BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017881
(364 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1OKC|A Chain A, Structure Of Mitochondrial AdpATP CARRIER IN COMPLEX WITH
Carboxyatractyloside
pdb|2C3E|A Chain A, The Bovine Mitochondrial Adp-Atp Carrier
Length = 297
Score = 77.8 bits (190), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 65/305 (21%), Positives = 131/305 (42%), Gaps = 40/305 (13%)
Query: 66 VREFLSGALAGAMTKAVLAPLETIRTRMVVGVGSKNISGS---------FIEVIEQQGWQ 116
+++FL+G +A A++K +AP+E ++ + V SK IS + + ++QG+
Sbjct: 8 LKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFL 67
Query: 117 GLWAGNGINMLRIIPTQAIELGTFECVKRAMTTAQEKWSQEECPKVQIGPLSLSFSLSWI 176
W GN N++R PTQA+ + K+ ++ Q W
Sbjct: 68 SFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQ-----------------FWR 110
Query: 177 SPXXXXXXXXXXXSTLAC--HPLEVLKDRLT------VSHDVYPSLSIAISKIYKEGGIG 228
+T C +PL+ + RL + + L I+KI+K G+
Sbjct: 111 YFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLR 170
Query: 229 AFYAGISPTLIGMLPYSTCYYFMYETLKKKYCNSKNKRSLNRPEMLALGALAGFTASTIS 288
Y G + ++ G++ Y Y+ +Y+T K + KN + M+A A A +S
Sbjct: 171 GLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDPKNVHII-VSWMIAQTVTA--VAGLVS 227
Query: 289 FPLEVARKRLMVGALQGKCPPHMAAALA---EVIREEGLMGLYRGWGASCLKVMPSSGIT 345
+P + R+R+M+ + + + ++ ++EG ++G ++ L+ M + +
Sbjct: 228 YPFDTVRRRMMMQSGRKGADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLRGMGGAFVL 287
Query: 346 WMFYE 350
++ E
Sbjct: 288 VLYDE 292
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 74/181 (40%), Gaps = 14/181 (7%)
Query: 190 STLACHPLEVLKDRLTVSH--------DVYPSLSIAISKIYKEGGIGAFYAGISPTLIGM 241
S A P+E +K L V H Y + + +I KE G +F+ G +I
Sbjct: 21 SKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRY 80
Query: 242 LPYSTCYYFMYETLKKKYCNSKNK-RSLNR--PEMLALGALAGFTASTISFPLEVARKRL 298
P + + K+ + ++ + R LA G AG T+ +PL+ AR RL
Sbjct: 81 FPTQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRL 140
Query: 299 MVGALQGKCPPH---MAAALAEVIREEGLMGLYRGWGASCLKVMPSSGITWMFYEAWKDI 355
+G + + ++ + +GL GLY+G+ S ++ + Y+ K +
Sbjct: 141 AADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGM 200
Query: 356 L 356
L
Sbjct: 201 L 201
>pdb|2LCK|A Chain A, Structure Of The Mitochondrial Uncoupling Protein 2
Determined By Nmr Molecular Fragment Replacement
Length = 303
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 64/308 (20%), Positives = 119/308 (38%), Gaps = 42/308 (13%)
Query: 68 EFLSGALAGAMTKAVLAPLETIRTRMVVGVGS------------KNISGSFIEVIEQQGW 115
+FL A + + PL+T + R+ + S + + G+ + ++ +G
Sbjct: 4 KFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGP 63
Query: 116 QGLWAGNGINMLRIIPTQAIELGTFECVKRAMTTAQEKWSQEECPKVQIGPLSLSFSLSW 175
+ L+ G + R + ++ +G ++ VK+ T E IG L+ S +
Sbjct: 64 RSLYNGLVAGLQRQMSFASVRIGLYDSVKQFYTKGSEHAG--------IGSRLLAGSTTG 115
Query: 176 ISPXXXXXXXXXXXSTLACHPLEVLKDRLTVSHDV-----YPSLSIAISKIYKEGGIGAF 230
+ P +V+K R Y S A I +E GI
Sbjct: 116 ------------ALAVAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGIRGL 163
Query: 231 YAGISPTLIGMLPYSTCYYFMYETLKKKYCNSKNKRSLNRPEMLALGALAGFTASTISFP 290
+ G SP + + Y+ +K + N + + P AGF + I+ P
Sbjct: 164 WKGTSPNVARNAIVNCAELVTYDLIKDTLLKA-NLMTDDLPCHFTSAFGAGFCTTVIASP 222
Query: 291 LEVARKRLMVGAL-QGKCPPHMAAALAEVIREEGLMGLYRGWGASCLKVMPSSGITWMFY 349
++V + R M AL Q H A + +R+EG Y+G+ S L++ + + ++ Y
Sbjct: 223 VDVVKTRYMNSALGQYHSAGHCALTM---LRKEGPRAFYKGFMPSFLRLGSWNVVMFVTY 279
Query: 350 EAWKDILL 357
E K L+
Sbjct: 280 EQLKRALM 287
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 46/95 (48%), Gaps = 5/95 (5%)
Query: 68 EFLSGALAGAMTKAVLAPLETIRTR-MVVGVGSKNISGS-FIEVIEQQGWQGLWAGNGIN 125
F S AG T + +P++ ++TR M +G + +G + ++ ++G + + G +
Sbjct: 205 HFTSAFGAGFCTTVIASPVDVVKTRYMNSALGQYHSAGHCALTMLRKEGPRAFYKGFMPS 264
Query: 126 MLRIIPTQAIELGTFECVKRAMTTAQEKWSQEECP 160
LR+ + T+E +KRA+ A + E P
Sbjct: 265 FLRLGSWNVVMFVTYEQLKRALMAA---YQSREAP 296
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,059,551
Number of Sequences: 62578
Number of extensions: 376940
Number of successful extensions: 702
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 687
Number of HSP's gapped (non-prelim): 9
length of query: 364
length of database: 14,973,337
effective HSP length: 100
effective length of query: 264
effective length of database: 8,715,537
effective search space: 2300901768
effective search space used: 2300901768
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)