Query 017881
Match_columns 364
No_of_seqs 282 out of 2024
Neff 9.4
Searched_HMMs 29240
Date Mon Mar 25 06:25:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017881.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017881hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lck_A Mitochondrial uncouplin 100.0 7.4E-57 2.5E-61 413.8 24.5 269 67-358 3-288 (303)
2 1okc_A ADP, ATP carrier protei 100.0 2.5E-56 8.5E-61 409.3 27.7 274 64-356 6-297 (297)
3 1okc_A ADP, ATP carrier protei 100.0 8.4E-36 2.9E-40 272.9 19.7 183 177-359 8-204 (297)
4 2lck_A Mitochondrial uncouplin 100.0 6.8E-36 2.3E-40 274.2 17.8 180 179-360 4-196 (303)
5 3tgu_G UQCRQ, mitochondrial ub 28.3 61 0.0021 22.3 3.6 41 224-264 31-71 (81)
6 3tgu_G UQCRQ, mitochondrial ub 23.0 83 0.0028 21.6 3.4 34 323-356 33-66 (81)
7 3f2e_A SIRV coat protein; four 19.4 33 0.0011 23.2 0.8 38 204-241 1-42 (100)
8 1pp9_G Ubiquinol-cytochrome C 19.1 1.1E+02 0.0036 21.1 3.3 41 225-265 32-72 (81)
9 2acm_A Mucin-1; auto-catalytic 15.0 28 0.00095 22.3 -0.4 19 101-119 41-59 (66)
10 1pp9_G Ubiquinol-cytochrome C 14.3 1.3E+02 0.0044 20.7 2.8 34 323-356 33-66 (81)
No 1
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=7.4e-57 Score=413.78 Aligned_cols=269 Identities=21% Similarity=0.352 Sum_probs=241.9
Q ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHcCC------------CCCChHHHHHHHHHhhCcccccccchhhHHhhhhhhh
Q 017881 67 REFLSGALAGAMTKAVLAPLETIRTRMVVGV------------GSKNISGSFIEVIEQQGWQGLWAGNGINMLRIIPTQA 134 (364)
Q Consensus 67 ~~~~ag~~a~~~~~~~~~Pld~ik~r~Q~~~------------~~~~~~~~~~~i~~~~G~~glyrG~~~~l~~~~~~~~ 134 (364)
.++++|++||+++.+++||||+||+|+|++. .++++.+++++|+++||++|||||+.+++++.+|..+
T Consensus 3 ~~~~aG~~ag~~~~~~~~Pld~iKtrlQ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~ 82 (303)
T 2lck_A 3 VKFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSLYNGLVAGLQRQMSFAS 82 (303)
T ss_dssp CHHHHHHHHHHHHHHTTHHHHHHHHHSSCCTTCCSHHHHCSCSSCSCHHHHHHHHHHHHCHHHHHSSHHHHHHHHHHHHH
T ss_pred hhHHhHHHHHHHHHHHcCcHHHHHHHHHhhhccccccccccCCCCCCHHHHHHHHHHhhCHHHHHcCCHHHHHHHHHHHH
Confidence 3689999999999999999999999999864 3678999999999999999999999999999999999
Q ss_pred hhHhhHHHHHHHHHHHhhhhccccCCccccCCCcccccccchhHHHHHHhHHHHHHHhhcccHHHHHHHHhhcCC-----
Q 017881 135 IELGTFECVKRAMTTAQEKWSQEECPKVQIGPLSLSFSLSWISPVAVAGAAAGVVSTLACHPLEVLKDRLTVSHD----- 209 (364)
Q Consensus 135 i~f~~y~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~ag~~~~~v~~Pld~vktr~q~~~~----- 209 (364)
++|++||.+|+.+.... + . ......+++|++||+++.++++|+|++|+|+|++..
T Consensus 83 i~f~~ye~~k~~~~~~~-------------~------~-~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~ 142 (303)
T 2lck_A 83 VRIGLYDSVKQFYTKGS-------------E------H-AGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAGGGR 142 (303)
T ss_dssp HTTTHHHHHHHHHSCCC-------------S------S-CCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSCCCSS
T ss_pred HHHHHHHHHHHHHhcCC-------------c------C-CcHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhcccccCCCC
Confidence 99999999999875310 0 0 123456799999999999999999999999999753
Q ss_pred CCCCHHHHHHHHHHhcchhhcccchhHHHhhhhhhHHHHHHHHHHHHHHHhcccCCCCCChhHHHHHHHHHHHhHhhhcc
Q 017881 210 VYPSLSIAISKIYKEGGIGAFYAGISPTLIGMLPYSTCYYFMYETLKKKYCNSKNKRSLNRPEMLALGALAGFTASTISF 289 (364)
Q Consensus 210 ~~~~~~~~~~~i~~~~G~~glyrG~~~~~~r~~~~~~~~~~~ye~~k~~~~~~~~~~~~~~~~~~~~g~~ag~~~~~~~~ 289 (364)
.|++.++++++|+++||++|||||+.+++++.+|+.+++|.+||.+|+.+.+... ...+....+++|++||++++++++
T Consensus 143 ~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i~f~~ye~~k~~l~~~~~-~~~~~~~~~~~g~~ag~~~~~~~~ 221 (303)
T 2lck_A 143 RYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLKANL-MTDDLPCHFTSAFGAGFCTTVIAS 221 (303)
T ss_dssp SCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTS-CCSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhcChhhhhCCccHHHHHHHHHHHHHHHHHHHHHHHHHhccC-CCCchHHHHHHHHHHHHHHHHHcC
Confidence 6899999999999999999999999999999999999999999999998865432 234566779999999999999999
Q ss_pred cHHHHHHHHHhccccCCCCCcHHHHHHHHHHhcChhhccccHHHHHhhHhhhHHHHHHHHHHHHHHhcC
Q 017881 290 PLEVARKRLMVGALQGKCPPHMAAALAEVIREEGLMGLYRGWGASCLKVMPSSGITWMFYEAWKDILLP 358 (364)
Q Consensus 290 Pldviktr~q~~~~~~~~~~~~~~~~~~i~~~eG~~gly~G~~~~~~~~~~~~~i~~~~ye~~k~~l~~ 358 (364)
|+||||+|||.+. ...|.++++|+++++++||++|||||+.|+++|.+|.++++|.+||.+|+.+..
T Consensus 222 P~dvvktrlq~~~--~~~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~~p~~~i~f~~ye~~k~~l~~ 288 (303)
T 2lck_A 222 PVDVVKTRYMNSA--LGQYHSAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQLKRALMA 288 (303)
T ss_dssp HHHHHHHHHTTCC--SSSCCSHHHHHHHHHHSSCTHHHHSCCHHHHHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred HHHHHHHHHHhcc--ccccCCHHHHHHHHHHHcChHHhhccHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 9999999999864 235999999999999999999999999999999999999999999999988754
No 2
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=2.5e-56 Score=409.28 Aligned_cols=274 Identities=22% Similarity=0.409 Sum_probs=235.7
Q ss_pred hHHHHHHHHHHHHHHHHHHhccHHHHHHHHHcCC---------CCCChHHHHHHHHHhhCcccccccchhhHHhhhhhhh
Q 017881 64 REVREFLSGALAGAMTKAVLAPLETIRTRMVVGV---------GSKNISGSFIEVIEQQGWQGLWAGNGINMLRIIPTQA 134 (364)
Q Consensus 64 ~~~~~~~ag~~a~~~~~~~~~Pld~ik~r~Q~~~---------~~~~~~~~~~~i~~~~G~~glyrG~~~~l~~~~~~~~ 134 (364)
+.+.++++|++||+++.++++|+|+||+|+|++. .++++.+++++|+++||++|||||+.+++++.+|.++
T Consensus 6 ~~~~~~~aG~~ag~~~~~~~~Pld~vKtrlQ~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~ 85 (297)
T 1okc_A 6 SFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQA 85 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHGGGCSSCCGGGSCCSHHHHHHHHHHHHCGGGGGTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhcccccccccccccccHHHHHHHHHhccchhheecccHHHHHHHHHHHH
Confidence 4678999999999999999999999999999863 4689999999999999999999999999999999999
Q ss_pred hhHhhHHHHHHHHHHHhhhhccccCCccccCCCcccccccchhHHHHHHhHHHHHHHhhcccHHHHHHHHhhcC------
Q 017881 135 IELGTFECVKRAMTTAQEKWSQEECPKVQIGPLSLSFSLSWISPVAVAGAAAGVVSTLACHPLEVLKDRLTVSH------ 208 (364)
Q Consensus 135 i~f~~y~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~ag~~~~~v~~Pld~vktr~q~~~------ 208 (364)
++|++||.+|+.+....+ . ...........+++|++||+++.++++|+|+||+|+|++.
T Consensus 86 ~~f~~ye~~k~~~~~~~~-------------~--~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~ 150 (297)
T 1okc_A 86 LNFAFKDKYKQIFLGGVD-------------R--HKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQ 150 (297)
T ss_dssp HHHHHHHHHHHHHHTTCC-------------T--TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTT
T ss_pred HHHHHHHHHHHHhccccC-------------c--ccchHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHhccccCCCcC
Confidence 999999999985432100 0 0011112345679999999999999999999999999974
Q ss_pred CCCCCHHHHHHHHHHhcchhhcccchhHHHhhhhhhHHHHHHHHHHHHHHHhcccCCCCCChhHHHHHHHHHHHhHhhhc
Q 017881 209 DVYPSLSIAISKIYKEGGIGAFYAGISPTLIGMLPYSTCYYFMYETLKKKYCNSKNKRSLNRPEMLALGALAGFTASTIS 288 (364)
Q Consensus 209 ~~~~~~~~~~~~i~~~~G~~glyrG~~~~~~r~~~~~~~~~~~ye~~k~~~~~~~~~~~~~~~~~~~~g~~ag~~~~~~~ 288 (364)
..|++.++++++|+++||++|||||+.+++++.+|+++++|.+||.+|+.+.+.. +.+....+++|++||+++++++
T Consensus 151 ~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~~~---~~~~~~~~~~g~~ag~~a~~~t 227 (297)
T 1okc_A 151 REFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDPK---NVHIIVSWMIAQTVTAVAGLVS 227 (297)
T ss_dssp CSCSSHHHHHHHHHHHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSCGGG---CSCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHhccHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhccCC---CccHHHHHHHHHHHHHHHHHhc
Confidence 3588999999999999999999999999999999999999999999999765432 3455667899999999999999
Q ss_pred ccHHHHHHHHHhcccc---CCCCCcHHHHHHHHHHhcChhhccccHHHHHhhHhhhHHHHHHHHHHHHHHh
Q 017881 289 FPLEVARKRLMVGALQ---GKCPPHMAAALAEVIREEGLMGLYRGWGASCLKVMPSSGITWMFYEAWKDIL 356 (364)
Q Consensus 289 ~Pldviktr~q~~~~~---~~~~~~~~~~~~~i~~~eG~~gly~G~~~~~~~~~~~~~i~~~~ye~~k~~l 356 (364)
+|+||||+|||++... ...|.++++|+++++++||++|||||+.|+++|. +.+++.|.+||.+|+.+
T Consensus 228 ~P~dvvktr~q~~~~~~~~~~~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~-~~~~~~f~~ye~~k~~l 297 (297)
T 1okc_A 228 YPFDTVRRRMMMQSGRKGADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLRG-MGGAFVLVLYDEIKKFV 297 (297)
T ss_dssp HHHHHHHHHHHTTTTCCGGGCSCSSHHHHHHHHHHHHCGGGGGTTHHHHHHHH-HHHHHHHHHHHTC----
T ss_pred ChHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHcCcCeEecchHHHHHhh-ccceeeehHHHHHHhhC
Confidence 9999999999986432 2368999999999999999999999999999996 56799999999998764
No 3
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=8.4e-36 Score=272.88 Aligned_cols=183 Identities=23% Similarity=0.362 Sum_probs=161.2
Q ss_pred hHHHHHHhHHHHHHHhhcccHHHHHHHHhhcC--------CCCCCHHHHHHHHHHhcchhhcccchhHHHhhhhhhHHHH
Q 017881 177 SPVAVAGAAAGVVSTLACHPLEVLKDRLTVSH--------DVYPSLSIAISKIYKEGGIGAFYAGISPTLIGMLPYSTCY 248 (364)
Q Consensus 177 ~~~~~ag~~ag~~~~~v~~Pld~vktr~q~~~--------~~~~~~~~~~~~i~~~~G~~glyrG~~~~~~r~~~~~~~~ 248 (364)
...+++|++||+++.++++|+|++|+|+|++. ..|++.++++++|+++||+++||||+.+.+++.+|+.+++
T Consensus 8 ~~~~~aG~~ag~~~~~~~~Pld~vKtrlQ~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~~~ 87 (297)
T 1okc_A 8 LKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQALN 87 (297)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHHHHHHHHGGGCSSCCGGGSCCSHHHHHHHHHHHHCGGGGGTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCcHHHHHHHHHhcccccccccccccccHHHHHHHHHhccchhheecccHHHHHHHHHHHHHH
Confidence 44579999999999999999999999999974 2589999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcccCCCCC---ChhHHHHHHHHHHHhHhhhcccHHHHHHHHHhcccc---CCCCCcHHHHHHHHHHhc
Q 017881 249 YFMYETLKKKYCNSKNKRSL---NRPEMLALGALAGFTASTISFPLEVARKRLMVGALQ---GKCPPHMAAALAEVIREE 322 (364)
Q Consensus 249 ~~~ye~~k~~~~~~~~~~~~---~~~~~~~~g~~ag~~~~~~~~Pldviktr~q~~~~~---~~~~~~~~~~~~~i~~~e 322 (364)
|.+||.+|+.+.+..+.... .....+++|++||++++++++|+|+||+|||++... ...|.++++|+++++++|
T Consensus 88 f~~ye~~k~~~~~~~~~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~~i~~~e 167 (297)
T 1okc_A 88 FAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSD 167 (297)
T ss_dssp HHHHHHHHHHHHTTCCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTCSCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccCcccchHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHhccccCCCcCcCCCCHHHHHHHHHHhc
Confidence 99999999965433222111 234568999999999999999999999999987432 236899999999999999
Q ss_pred ChhhccccHHHHHhhHhhhHHHHHHHHHHHHHHhcCC
Q 017881 323 GLMGLYRGWGASCLKVMPSSGITWMFYEAWKDILLPL 359 (364)
Q Consensus 323 G~~gly~G~~~~~~~~~~~~~i~~~~ye~~k~~l~~~ 359 (364)
|++|||||+.++++|.+|..++.|.+||.+|+.+.+.
T Consensus 168 G~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~~ 204 (297)
T 1okc_A 168 GLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDP 204 (297)
T ss_dssp CHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSCGG
T ss_pred cHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 9999999999999999999999999999999987543
No 4
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=6.8e-36 Score=274.20 Aligned_cols=180 Identities=21% Similarity=0.343 Sum_probs=164.1
Q ss_pred HHHHHhHHHHHHHhhcccHHHHHHHHhhcCC-----------CCCCHHHHHHHHHHhcchhhcccchhHHHhhhhhhHHH
Q 017881 179 VAVAGAAAGVVSTLACHPLEVLKDRLTVSHD-----------VYPSLSIAISKIYKEGGIGAFYAGISPTLIGMLPYSTC 247 (364)
Q Consensus 179 ~~~ag~~ag~~~~~v~~Pld~vktr~q~~~~-----------~~~~~~~~~~~i~~~~G~~glyrG~~~~~~r~~~~~~~ 247 (364)
.+++|++||+++.++++|+|++|+|+|++.. .|++.++++++|+++||+++||||+.+.+++.+|+.++
T Consensus 4 ~~~aG~~ag~~~~~~~~Pld~iKtrlQ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i 83 (303)
T 2lck_A 4 KFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSLYNGLVAGLQRQMSFASV 83 (303)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHSSCCTTCCSHHHHCSCSSCSCHHHHHHHHHHHHCHHHHHSSHHHHHHHHHHHHHH
T ss_pred hHHhHHHHHHHHHHHcCcHHHHHHHHHhhhccccccccccCCCCCCHHHHHHHHHHhhCHHHHHcCCHHHHHHHHHHHHH
Confidence 4689999999999999999999999999743 58899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcccCCCCCChhHHHHHHHHHHHhHhhhcccHHHHHHHHHhcccc--CCCCCcHHHHHHHHHHhcChh
Q 017881 248 YYFMYETLKKKYCNSKNKRSLNRPEMLALGALAGFTASTISFPLEVARKRLMVGALQ--GKCPPHMAAALAEVIREEGLM 325 (364)
Q Consensus 248 ~~~~ye~~k~~~~~~~~~~~~~~~~~~~~g~~ag~~~~~~~~Pldviktr~q~~~~~--~~~~~~~~~~~~~i~~~eG~~ 325 (364)
+|.+||.+|+.+.+..+ ..+....+++|++||++++++++|+|+||+|||++... ...|.++++|+++++++||++
T Consensus 84 ~f~~ye~~k~~~~~~~~--~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~i~~~eG~~ 161 (303)
T 2lck_A 84 RIGLYDSVKQFYTKGSE--HAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGIR 161 (303)
T ss_dssp TTTHHHHHHHHHSCCCS--SCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSCCCSSSCCCHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHhcCCc--CCcHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhcccccCCCCCCCCHHHHHHHHHHhcChh
Confidence 99999999999865422 35667789999999999999999999999999997532 336899999999999999999
Q ss_pred hccccHHHHHhhHhhhHHHHHHHHHHHHHHhcCCC
Q 017881 326 GLYRGWGASCLKVMPSSGITWMFYEAWKDILLPLK 360 (364)
Q Consensus 326 gly~G~~~~~~~~~~~~~i~~~~ye~~k~~l~~~~ 360 (364)
|||||+.++++|.+|..++.|.+||.+|+.+.+..
T Consensus 162 glyrG~~~~l~~~~~~~~i~f~~ye~~k~~l~~~~ 196 (303)
T 2lck_A 162 GLWKGTSPNVARNAIVNCAELVTYDLIKDTLLKAN 196 (303)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTT
T ss_pred hhhCCccHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999987643
No 5
>3tgu_G UQCRQ, mitochondrial ubiquinol-cytochrome C reductase UB binding protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein; HET: HEM WF3 UQ CDL PEE HEC BOG; 2.70A {Gallus gallus} PDB: 3cwb_G* 3h1i_G* 3h1h_G* 3h1k_G* 3h1l_G* 3h1j_G* 3l71_G* 3l72_G* 3l73_G* 3l74_G* 3l75_G* 3l70_G*
Probab=28.30 E-value=61 Score=22.31 Aligned_cols=41 Identities=12% Similarity=0.209 Sum_probs=31.9
Q ss_pred hcchhhcccchhHHHhhhhhhHHHHHHHHHHHHHHHhcccC
Q 017881 224 EGGIGAFYAGISPTLIGMLPYSTCYYFMYETLKKKYCNSKN 264 (364)
Q Consensus 224 ~~G~~glyrG~~~~~~r~~~~~~~~~~~ye~~k~~~~~~~~ 264 (364)
..|+...+|-+...++..+|..++.+.+|++.++.......
T Consensus 31 ~~~i~N~~RR~~~q~l~v~pPfi~~Y~i~~Wa~~~ne~l~r 71 (81)
T 3tgu_G 31 SDALPNVWRRFSSQVFKVAPPFLGAYLLYSWGTQEFERLKR 71 (81)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred hhhhhHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHhC
Confidence 35566666777778888999999999999999987765444
No 6
>3tgu_G UQCRQ, mitochondrial ubiquinol-cytochrome C reductase UB binding protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein; HET: HEM WF3 UQ CDL PEE HEC BOG; 2.70A {Gallus gallus} PDB: 3cwb_G* 3h1i_G* 3h1h_G* 3h1k_G* 3h1l_G* 3h1j_G* 3l71_G* 3l72_G* 3l73_G* 3l74_G* 3l75_G* 3l70_G*
Probab=23.04 E-value=83 Score=21.65 Aligned_cols=34 Identities=18% Similarity=0.313 Sum_probs=26.0
Q ss_pred ChhhccccHHHHHhhHhhhHHHHHHHHHHHHHHh
Q 017881 323 GLMGLYRGWGASCLKVMPSSGITWMFYEAWKDIL 356 (364)
Q Consensus 323 G~~gly~G~~~~~~~~~~~~~i~~~~ye~~k~~l 356 (364)
|+...+|-+...++.++|...+.+.+|+..++..
T Consensus 33 ~i~N~~RR~~~q~l~v~pPfi~~Y~i~~Wa~~~n 66 (81)
T 3tgu_G 33 ALPNVWRRFSSQVFKVAPPFLGAYLLYSWGTQEF 66 (81)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHH
Confidence 4444455566778899999999999998887764
No 7
>3f2e_A SIRV coat protein; four helix bundle, virus coat protein, viral protein; HET: CIT; 1.67A {Sulfolobus islandicus rudivirus 1 variorganism_taxid}
Probab=19.39 E-value=33 Score=23.18 Aligned_cols=38 Identities=16% Similarity=0.327 Sum_probs=21.0
Q ss_pred HhhcCCCCCCHHHHHHHHHHhcch----hhcccchhHHHhhh
Q 017881 204 LTVSHDVYPSLSIAISKIYKEGGI----GAFYAGISPTLIGM 241 (364)
Q Consensus 204 ~q~~~~~~~~~~~~~~~i~~~~G~----~glyrG~~~~~~r~ 241 (364)
||.+-.++.+.-+-...++.+.|+ +..|.|++..+.|.
T Consensus 1 mqtnvpkftsvne~vsavltqygvtgpnraiyqgfglkvara 42 (100)
T 3f2e_A 1 MQTNVPKFTAVAEQVSAVLSQYGITGPNRAIYQGFGLKVARA 42 (100)
T ss_dssp -------CHHHHHHHHHHHHHHTCCGGGHHHHHHHHHHHHHH
T ss_pred CCCCCccchhHHHHHHHHHHHhcCCCccHHHHhhhhHHHHHH
Confidence 455555677777777777777776 44677776665544
No 8
>1pp9_G Ubiquinol-cytochrome C reductase complex ubiquino protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: f.23.13.1 PDB: 1bgy_G* 1be3_G* 1l0n_G* 1ntk_G* 1ntm_G* 1ntz_G* 1nu1_G* 1l0l_G* 1ppj_G* 1sqb_G* 1sqp_G* 1sqq_G* 1sqv_G* 1sqx_G* 2a06_G* 2fyu_G* 2ybb_G* 1bcc_G* 2bcc_G* 3bcc_G* ...
Probab=19.06 E-value=1.1e+02 Score=21.10 Aligned_cols=41 Identities=20% Similarity=0.353 Sum_probs=31.4
Q ss_pred cchhhcccchhHHHhhhhhhHHHHHHHHHHHHHHHhcccCC
Q 017881 225 GGIGAFYAGISPTLIGMLPYSTCYYFMYETLKKKYCNSKNK 265 (364)
Q Consensus 225 ~G~~glyrG~~~~~~r~~~~~~~~~~~ye~~k~~~~~~~~~ 265 (364)
.|+...+|-+.-.++..+|...+.+.+|++.++.......+
T Consensus 32 ~~i~n~~RR~~~~~l~v~pPfv~~Y~i~~Wa~~~~e~~~rK 72 (81)
T 1pp9_G 32 KGIPNVLRRTRACILRVAPPFVAFYLVYTWGTQEFEKSKRK 72 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS
T ss_pred hhhhHHHHHHHhcceeeehhHHHHHHHHHHHHHHHHHHhCC
Confidence 45566666677777788899999999999999887655443
No 9
>2acm_A Mucin-1; auto-catalytic proteolysis, structural protein; NMR {Homo sapiens}
Probab=15.01 E-value=28 Score=22.28 Aligned_cols=19 Identities=37% Similarity=0.683 Sum_probs=14.4
Q ss_pred ChHHHHHHHHHhhCccccc
Q 017881 101 NISGSFIEVIEQQGWQGLW 119 (364)
Q Consensus 101 ~~~~~~~~i~~~~G~~gly 119 (364)
++...+.+|++++++.||+
T Consensus 41 ~is~L~lqIykq~~FLgl~ 59 (66)
T 2acm_A 41 DISEMFLQIYKQGGFLGLS 59 (66)
T ss_dssp HHHHHHHHHCTTTTEEEEE
T ss_pred HHHHHHHHHHccCCeeeee
Confidence 4566677788888888875
No 10
>1pp9_G Ubiquinol-cytochrome C reductase complex ubiquino protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: f.23.13.1 PDB: 1bgy_G* 1be3_G* 1l0n_G* 1ntk_G* 1ntm_G* 1ntz_G* 1nu1_G* 1l0l_G* 1ppj_G* 1sqb_G* 1sqp_G* 1sqq_G* 1sqv_G* 1sqx_G* 2a06_G* 2fyu_G* 2ybb_G* 1bcc_G* 2bcc_G* 3bcc_G* ...
Probab=14.29 E-value=1.3e+02 Score=20.67 Aligned_cols=34 Identities=21% Similarity=0.252 Sum_probs=26.0
Q ss_pred ChhhccccHHHHHhhHhhhHHHHHHHHHHHHHHh
Q 017881 323 GLMGLYRGWGASCLKVMPSSGITWMFYEAWKDIL 356 (364)
Q Consensus 323 G~~gly~G~~~~~~~~~~~~~i~~~~ye~~k~~l 356 (364)
|+...+|-+...++.++|...+.+.+|+..++..
T Consensus 33 ~i~n~~RR~~~~~l~v~pPfv~~Y~i~~Wa~~~~ 66 (81)
T 1pp9_G 33 GIPNVLRRTRACILRVAPPFVAFYLVYTWGTQEF 66 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHhcceeeehhHHHHHHHHHHHHHHH
Confidence 3444455567778899999999999999887765
Done!