Query 017883
Match_columns 364
No_of_seqs 186 out of 694
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 04:15:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017883.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017883hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG3781 Predicted membrane pro 100.0 8E-67 1.7E-71 486.8 28.0 252 101-360 7-262 (306)
2 PF01062 Bestrophin: Bestrophi 100.0 5.6E-58 1.2E-62 440.7 25.4 255 94-360 7-268 (293)
3 KOG3547 Bestrophin (Best vitel 98.2 4.8E-05 1E-09 78.2 15.3 261 88-359 5-294 (450)
4 PF14023 DUF4239: Protein of u 95.9 1.2 2.7E-05 40.9 18.4 67 158-228 2-68 (209)
5 PF01988 VIT1: VIT family; In 58.9 56 0.0012 30.3 8.4 30 303-332 128-157 (213)
6 COG2238 RPS19A Ribosomal prote 55.2 7.8 0.00017 34.3 1.8 38 58-97 12-54 (147)
7 cd02433 Nodulin-21_like_2 Nodu 54.2 1.1E+02 0.0024 29.2 9.6 49 304-352 148-198 (234)
8 cd08816 CARD_RIG-I_1 Caspase a 45.7 61 0.0013 26.4 5.4 83 219-304 6-89 (89)
9 PF10947 DUF2628: Protein of u 29.4 1.3E+02 0.0028 24.7 5.2 63 105-179 42-104 (108)
10 COG3086 RseC Positive regulato 26.9 1.2E+02 0.0026 27.1 4.7 27 159-189 110-136 (150)
11 PF11696 DUF3292: Protein of u 25.8 79 0.0017 34.6 4.0 68 282-351 281-353 (642)
12 PLN02673 quinolinate synthetas 25.2 1.1E+02 0.0023 33.9 4.9 48 30-77 49-103 (724)
13 cd02432 Nodulin-21_like_1 Nodu 23.8 5.1E+02 0.011 24.3 8.7 30 304-333 134-163 (218)
14 PF13096 CENP-P: CENP-A-nucleo 23.3 58 0.0013 29.8 2.1 21 166-186 60-80 (177)
15 COG0818 DgkA Diacylglycerol ki 23.3 2.3E+02 0.0049 24.6 5.6 49 313-361 30-78 (123)
16 PF15278 Sec3_C_2: Sec3 exocys 23.2 74 0.0016 25.3 2.4 25 281-305 40-64 (86)
17 PF06210 DUF1003: Protein of u 22.1 2.6E+02 0.0056 23.6 5.7 44 119-170 4-47 (108)
18 PRK09333 30S ribosomal protein 20.7 62 0.0014 29.0 1.8 38 58-97 12-54 (150)
No 1
>COG3781 Predicted membrane protein [Function unknown]
Probab=100.00 E-value=8e-67 Score=486.77 Aligned_cols=252 Identities=23% Similarity=0.383 Sum_probs=236.5
Q ss_pred hhHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHHhhhccccCCCCcccccccCCchhHhHHHHHHHHHHhcchhHHHHH
Q 017883 101 RHVRHLLSSLSSRVILSLIPPVIAFTMVAVVIASYNSALDSHLLPGFLPVLRASSLPYQLTAPALALLLVFRTEASYSRF 180 (364)
Q Consensus 101 R~~~~ll~~~~ssVl~~i~~~vl~~~~~a~~V~~~~~~~~~~~~p~~~p~l~~~~~p~sllg~aLsLLLVFRtNtAY~Rw 180 (364)
.||.++++.++|||+++|.|.+++++++|++|.+++... .|. .......||++.|++||++||||||+|||||
T Consensus 7 ~hw~r~~f~~rGSVl~~i~~rll~~~~fS~~v~~~~~w~----~~~---~i~~~~tpf~i~giaLai~L~FRnNaaYdR~ 79 (306)
T COG3781 7 QHWLRLIFVWRGSVLPKILPRLLLCFLFSLVVTAVLPWY----TPL---SIPFTLTPFSIPGIALAIFLGFRNNAAYDRY 79 (306)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHhh----ccc---cceeccCcchhHHHHHHHHHhhccchHHHHH
Confidence 577799999999999999999999999999999887632 111 2334568999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHHHHhcccCCCCCcchhhhcCCHHHHHHHhcCCCc
Q 017883 181 VDGKKAWTQIIAGTNDFATMVISGTDNSTDECIKDSLLRYIMAFPVALKGHVICDSDVSGDLQDLLDADDLAIVLDSKHR 260 (364)
Q Consensus 181 wEaRklWG~lvn~sRnlar~~~~~~~~~~d~~~~~~l~r~iiAf~~aLk~hLR~~~~~~~eL~~lL~~~el~~l~~a~n~ 260 (364)
|||||+||+++|.+||++|++++.++++.|.++++++++.++|||+|+|.|||++ +..+|+..+|+.+.++.+....|+
T Consensus 80 wEaRKlWG~lvn~~Rnl~R~i~t~v~e~~d~a~~~~~l~llvAFahalr~~LR~q-p~~~~l~a~l~~~~~~kv~a~~np 158 (306)
T COG3781 80 WEARKLWGQLVNAIRNLARQIWTLVPETLDSADVREFLRLLVAFAHALRLQLRKQ-PQNEDLAALLPTSDYEKVLASNNP 158 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHhCC-CchHHHHHhcCHHHHHHHHhccCC
Confidence 9999999999999999999999999877889999999999999999999999986 468999999999999999999999
Q ss_pred HHHHHHHHHHHHHh----ccCChHHHHHHHHHHHHHHhhhhhhhhhcCCCCchhhHHHHHHHHHHHHHHhhHHhhhccCc
Q 017883 261 PRCIIEFISQSLQL----LNLEATKQNMLESKISCFHEGIGVCEQLMGIPIPLSYTRLTSRFLVLWHLTLPIILWDDCHW 336 (364)
Q Consensus 261 P~~il~~ls~~l~~----~~l~~~~~~~m~~~l~~l~d~~G~cERI~~TPiP~sYt~h~~~fl~lyll~LPF~Lv~~~gW 336 (364)
|++++..|++++++ +.+|+.+...|++.++.+.|.+||||||.+||+|++|+.|+||.+++||++|||+||+++||
T Consensus 159 p~ei~~wmGe~l~~q~r~g~l~~~~~~sl~~~L~~~s~vlggCERI~~TPiPfAYtl~lhrtvyl~C~~LPF~lV~tlgw 238 (306)
T COG3781 159 PLEIALWMGEWLQQQRRNGQLDAIQFTSLDRRLNSISAVLGGCERIAYTPIPFAYTLHLHRTVYLFCFLLPFGLVETLGW 238 (306)
T ss_pred HHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHhHHHHhcCCccHHHHHHHHHHHHHHHHHhHHHHHHHccc
Confidence 99999999999976 48999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhh
Q 017883 337 IVVPATFISAASLFCIEEVSLSYL 360 (364)
Q Consensus 337 ~tip~~~lia~~llGIeeIg~eIE 360 (364)
+|+.++++|||+|+|+|+||.|||
T Consensus 239 ~Tp~~s~lIayTffgleaia~EiE 262 (306)
T COG3781 239 ATPFFSVLIAYTFFGLEAIAEEIE 262 (306)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999
No 2
>PF01062 Bestrophin: Bestrophin, RFP-TM, chloride channel; InterPro: IPR021134 Bestrophin is a 68kDa basolateral plasma membrane protein expressed in retinal pigment epithelial cells (RPE). It is encoded by the VMD2 gene, which is mutated in Best macular dystrophy, a disease characterised by a depressed light peak in the electrooculogram []. VMD2 encodes a 585-amino acid protein with an approximate mass of 68 kDa which has been designated bestrophin. Bestrophin shares homology with the Caenorhabditis elegans RFP gene family, named for the presence of a conserved arginine (R), phenylalanine (F), proline (P), amino acid sequence motif. Bestrophin is a plasma membrane protein, localised to the basolateral surface of RPE cells consistent with a role for bestrophin in the generation or regulation of the EOG light peak. Bestrophin and other RFP family members represent a new class of chloride channels, indicating a direct role for bestrophin in generating the light peak []. The VMD2 gene underlying Best disease was shown to represent the first human member of the RFP-TM protein family. More than 97% of the disease-causing mutations are located in the N-terminal RFP-TM domain implying important functional properties []. This entry also includes a number of hypothetical proteins belonging to protein family UPF0187.
Probab=100.00 E-value=5.6e-58 Score=440.68 Aligned_cols=255 Identities=29% Similarity=0.470 Sum_probs=228.5
Q ss_pred HhhhccchhHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHHhhhccccCCCCcccccccCCchhHhHHHHHHHHHHhcc
Q 017883 94 VEHRSSLRHVRHLLSSLSSRVILSLIPPVIAFTMVAVVIASYNSALDSHLLPGFLPVLRASSLPYQLTAPALALLLVFRT 173 (364)
Q Consensus 94 ~~hrs~~R~~~~ll~~~~ssVl~~i~~~vl~~~~~a~~V~~~~~~~~~~~~p~~~p~l~~~~~p~sllg~aLsLLLVFRt 173 (364)
..||++ ++|.++++.++|+|+++++++++++++++++|++++.... ...+..+..+++++|++|||+|||||
T Consensus 7 ~~~~~~-~~~~~~l~~~~gsv~~~i~~~ll~~~~~~~~v~~~~~~~~-------~~~~~~~~~~~~l~g~~l~~lL~Fr~ 78 (293)
T PF01062_consen 7 QDVRTS-RSWWRLLFRWRGSVLKRIWPPLLVFLALAAAVALLYIFEP-------ICWLSLPSSPFSLLGIALSFLLVFRT 78 (293)
T ss_pred cccCCc-ccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc-------cccccccccchhHHHHHHHHHHHHHH
Confidence 457777 6666788899999999999999999999999999874221 12455677899999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHHHHhcccCCCCCcchhhhcC---CHHH
Q 017883 174 EASYSRFVDGKKAWTQIIAGTNDFATMVISGTDNSTDECIKDSLLRYIMAFPVALKGHVICDSDVSGDLQDLL---DADD 250 (364)
Q Consensus 174 NtAY~RwwEaRklWG~lvn~sRnlar~~~~~~~~~~d~~~~~~l~r~iiAf~~aLk~hLR~~~~~~~eL~~lL---~~~e 250 (364)
|+||+|||||||+||+++|.+||++++++++++++ .++++++|+++||++++|+|||++++ ..++++++ .++|
T Consensus 79 n~ay~Rwwe~r~~wg~l~~~~r~l~~~~~~~~~~~---~~~~~l~r~~ia~~~~~~~~lR~~~~-~~~~~~ll~~g~~~~ 154 (293)
T PF01062_consen 79 NTAYDRWWEARKLWGNLVNWSRNLARQICAFVPDD---DERRRLLRRLIAFAVALKAHLRGEST-SEELEDLLEAGLTEE 154 (293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch---hhHHHHHHHHHHHHHHHHHHhcCCCh-hhhhhhhhhccchHH
Confidence 99999999999999999999999999999999643 23889999999999999999999764 44577776 6666
Q ss_pred HHHHhcCCCcHHHHHHHHHHHHHhc----cCChHHHHHHHHHHHHHHhhhhhhhhhcCCCCchhhHHHHHHHHHHHHHHh
Q 017883 251 LAIVLDSKHRPRCIIEFISQSLQLL----NLEATKQNMLESKISCFHEGIGVCEQLMGIPIPLSYTRLTSRFLVLWHLTL 326 (364)
Q Consensus 251 l~~l~~a~n~P~~il~~ls~~l~~~----~l~~~~~~~m~~~l~~l~d~~G~cERI~~TPiP~sYt~h~~~fl~lyll~L 326 (364)
.+.+.++.|+|+.++..+++.++++ .+++....+|++.++++.|++|+||||++||+|++|++|+++++++|++++
T Consensus 155 ~~~l~~~~~~p~~i~~~~~~~l~~~~~~g~~~~~~~~~l~~~l~~l~~~~g~~eri~~TPiP~~Y~~~~~~~l~~y~~~l 234 (293)
T PF01062_consen 155 ERRLESADNPPNWILIQWSQRLREARREGLIDSFQLAQLDNELNALRDAQGGCERIKNTPIPFAYTQHLSRFLYIYLLLL 234 (293)
T ss_pred HHHHHhhcCcHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHhhhheeCCCcCCHHHHHHHHHHHHHHHHHH
Confidence 5688888999999999999988764 589999999999999999999999999999999999999999999999999
Q ss_pred hHHhhhccCcchHHHHHHHHHHHHHHHHHHHHhh
Q 017883 327 PIILWDDCHWIVVPATFISAASLFCIEEVSLSYL 360 (364)
Q Consensus 327 PF~Lv~~~gW~tip~~~lia~~llGIeeIg~eIE 360 (364)
||++++++||++||++++++|+|+|+|+||.|||
T Consensus 235 Pf~l~~~~~~~~~~~~~l~~~~~~gl~~ig~~le 268 (293)
T PF01062_consen 235 PFGLVDSLGWLTPPITFLVSFFFLGLEEIGEELE 268 (293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999998
No 3
>KOG3547 consensus Bestrophin (Best vitelliform macular dystrophy-associated protein) [General function prediction only]
Probab=98.17 E-value=4.8e-05 Score=78.17 Aligned_cols=261 Identities=15% Similarity=0.155 Sum_probs=156.5
Q ss_pred CChhhHHhhhccchhHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHHhhhc-cccCCCCcccccccCCchhHhHHHHHH
Q 017883 88 YSHEKWVEHRSSLRHVRHLLSSLSSRVILSLIPPVIAFTMVAVVIASYNSAL-DSHLLPGFLPVLRASSLPYQLTAPALA 166 (364)
Q Consensus 88 y~~~~W~~hrs~~R~~~~ll~~~~ssVl~~i~~~vl~~~~~a~~V~~~~~~~-~~~~~p~~~p~l~~~~~p~sllg~aLs 166 (364)
|+.| ... |...-+..+++.|||||++.|+..+++..+.=.+|.+++... .... ...+..+..---.. .--+.|.
T Consensus 5 Y~~~--v~t-~~~~~f~kll~rWkGSiwKai~~el~~~l~~Y~~i~~iYR~~l~~~q-q~~Fe~~~~~~d~~-~~~iPLt 79 (450)
T KOG3547|consen 5 YNLD--VAT-SYSFTFLKLLLRWKGSIWKAIWKELLIWLILYYIISVIYRFALTESQ-QETFEKFVMYCDSR-LDFIPLT 79 (450)
T ss_pred ehHH--hhh-hccHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHhcc-cccccch
Confidence 4444 444 555667789999999999999999888776555666655532 1000 00000000000000 0122678
Q ss_pred HHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC--ChHHHHHHHHHHH-HHHHHH-----HhcccCCCCC
Q 017883 167 LLLVFRTEASYSRFVDGKKAWTQIIAGTNDFATMVISGTDNST--DECIKDSLLRYIM-AFPVAL-----KGHVICDSDV 238 (364)
Q Consensus 167 LLLVFRtNtAY~RwwEaRklWG~lvn~sRnlar~~~~~~~~~~--d~~~~~~l~r~ii-Af~~aL-----k~hLR~~~~~ 238 (364)
|+|+|=.++-.+|||+-=..-|-+ +|++..+.+++++.+ ....|+.++|+++ +-+-+. |-.-|- +..
T Consensus 80 FmLGFfVt~Vv~RW~~~f~nig~i----d~~a~~vs~~i~g~d~~~r~~RRtIiRY~vLsqvLv~RdIS~~VrkRF-Pt~ 154 (450)
T KOG3547|consen 80 FMLGFFVTIVVDRWWKQFRNIGWI----DNLALLVSAYIPGTDERARLIRRTIIRYLVLSQVLVFRDISMKVRKRF-PTL 154 (450)
T ss_pred HhhhhhHHHHHHHHHHHHhccCch----HHHHHHHHHHccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCh
Confidence 899999999999999887766654 667777778886522 2344566666653 222222 222221 221
Q ss_pred cchh--hhcCCHHHHHHHhc---CCC-c---H-HHHHHHHHHHHHhccCC-hHHHHHHHHHHHHHHhhhhhhhhhcCCCC
Q 017883 239 SGDL--QDLLDADDLAIVLD---SKH-R---P-RCIIEFISQSLQLLNLE-ATKQNMLESKISCFHEGIGVCEQLMGIPI 307 (364)
Q Consensus 239 ~~eL--~~lL~~~el~~l~~---a~n-~---P-~~il~~ls~~l~~~~l~-~~~~~~m~~~l~~l~d~~G~cERI~~TPi 307 (364)
+.+ .++++++|++.+.. ..| + | +.+.+.+.+.-+++.++ +.....+.+.+.++...++..=.-=-.||
T Consensus 155 -d~lv~AG~mt~~E~~~~~~~~~~~~~kyw~Pi~Wa~sl~~~a~~~g~i~~d~~~~~~~~ei~~fR~~l~~L~~yDwVpI 233 (450)
T KOG3547|consen 155 -DHLVEAGLMTEEELDILENIVDSKYMKYWVPINWAFSLLRKARKEGRIESDYLYNSLLGEIKKFRTGLSLLCNYDWVPI 233 (450)
T ss_pred -HHHHHhcCCcHHHHHHHHhcccccccceeecHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHHhhccccCCCceec
Confidence 222 67999999988843 334 2 4 46777777777777773 44666666777777666555555555899
Q ss_pred chhhHHHHHHHHHHHHHHhhHH----h-----hhccCcchHHHHHHHHHHHHHHHHHHHHh
Q 017883 308 PLSYTRLTSRFLVLWHLTLPII----L-----WDDCHWIVVPATFISAASLFCIEEVSLSY 359 (364)
Q Consensus 308 P~sYt~h~~~fl~lyll~LPF~----L-----v~~~gW~tip~~~lia~~llGIeeIg~eI 359 (364)
|+.|++-....+.+|.++-=|+ . .+...+..+..|.+=-.++.|--.+|+.+
T Consensus 234 PL~YpQvV~lAVr~YF~~cL~~RQ~l~~~~~~~~~id~~fPi~T~lQFiF~vGWmKVaE~L 294 (450)
T KOG3547|consen 234 PLVYPQVVFLAVRSYFFICLFGRQYLDRDDSKKTEIDLYFPIMTILQFIFYVGWLKVAEVL 294 (450)
T ss_pred cccccceeeeehHHhHHHHhhccccCCcccccccccceeehhHHHHHHHHHhhHHHHHHHH
Confidence 9999987766655555433222 1 11335666666666666677777777654
No 4
>PF14023 DUF4239: Protein of unknown function (DUF4239)
Probab=95.87 E-value=1.2 Score=40.89 Aligned_cols=67 Identities=19% Similarity=0.328 Sum_probs=53.2
Q ss_pred hHhHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHHH
Q 017883 158 YQLTAPALALLLVFRTEASYSRFVDGKKAWTQIIAGTNDFATMVISGTDNSTDECIKDSLLRYIMAFPVAL 228 (364)
Q Consensus 158 ~sllg~aLsLLLVFRtNtAY~RwwEaRklWG~lvn~sRnlar~~~~~~~~~~d~~~~~~l~r~iiAf~~aL 228 (364)
++++|+..|++|+|=.+.+|+|+.++++.--.=.+..+++.+.+..+.+++ .++++-..+..|..++
T Consensus 2 ~~~vg~l~al~laf~~~~~~~~~~~a~~~v~~EA~al~~l~~~~~~lp~~~----~~~~~r~~l~~Y~~~v 68 (209)
T PF14023_consen 2 FGVVGVLFALLLAFTISSAWSRYDNARQAVNQEANALGTLYRLLASLPEPP----DRDEIRALLRAYTRAV 68 (209)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCc----hhHHHHHHHHHHHHHH
Confidence 467899999999999999999999999999999999999999988764122 2445555666666554
No 5
>PF01988 VIT1: VIT family; InterPro: IPR008217 Proteins containing this entry have no known function and are predicted to be integral membrane proteins. They include the Ccc1 protein from Saccharomyces cerevisiae (Baker's yeast) (P47818 from SWISSPROT) that may have a role in regulating calcium levels [].
Probab=58.89 E-value=56 Score=30.31 Aligned_cols=30 Identities=17% Similarity=0.046 Sum_probs=23.9
Q ss_pred cCCCCchhhHHHHHHHHHHHHHHhhHHhhh
Q 017883 303 MGIPIPLSYTRLTSRFLVLWHLTLPIILWD 332 (364)
Q Consensus 303 ~~TPiP~sYt~h~~~fl~lyll~LPF~Lv~ 332 (364)
...|+=-+.......++...+-++||.+.+
T Consensus 128 ~~~p~~~al~~~~sf~lg~liPllp~~~~~ 157 (213)
T PF01988_consen 128 EESPWKAALATFLSFILGGLIPLLPYFFLP 157 (213)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 446666677778888888889999999987
No 6
>COG2238 RPS19A Ribosomal protein S19E (S16A) [Translation, ribosomal structure and biogenesis]
Probab=55.15 E-value=7.8 Score=34.30 Aligned_cols=38 Identities=34% Similarity=0.490 Sum_probs=30.2
Q ss_pred chhHHHHHHhhC-----CCchhhhhhhhccccccCCChhhHHhhh
Q 017883 58 KTLTLISVLRAI-----PDWADRVKERGVKQKRTLYSHEKWVEHR 97 (364)
Q Consensus 58 ~~~~~~~~~~~~-----~~~~d~~~e~~~~~~r~~y~~~~W~~hr 97 (364)
..+.+.+.|+.- |+|+|-+|-..++-|.|. .+||..-|
T Consensus 12 lI~~lA~~LK~~~kv~pP~wa~~vKTG~~kE~~P~--~~DWwY~R 54 (147)
T COG2238 12 LIEALASYLKETGKVKPPEWADIVKTGVHKERPPE--QEDWWYVR 54 (147)
T ss_pred HHHHHHHHHHhcCCcCChhhhhhhhccccccCCCC--CCchHHHH
Confidence 466677777664 999999999888888887 88898664
No 7
>cd02433 Nodulin-21_like_2 Nodulin-21 and CCC1-related protein family. Nodulin-21_like_2: This is a family of proteins closely related to nodulin-21, a plant nodule-specific protein that may be involved in symbiotic nitrogen fixation. This family is also related to CCC1, a yeast vacuole transmembrane protein that functions as an iron and manganese transporter.
Probab=54.19 E-value=1.1e+02 Score=29.20 Aligned_cols=49 Identities=12% Similarity=-0.059 Sum_probs=30.8
Q ss_pred CCCCchhhHHHHHHHHHHHHHHhhHHhhhcc--CcchHHHHHHHHHHHHHH
Q 017883 304 GIPIPLSYTRLTSRFLVLWHLTLPIILWDDC--HWIVVPATFISAASLFCI 352 (364)
Q Consensus 304 ~TPiP~sYt~h~~~fl~lyll~LPF~Lv~~~--gW~tip~~~lia~~llGI 352 (364)
..|+=-+.+..++.++...+-+|||.+.... .+.+..++.+++.+++|.
T Consensus 148 ~~P~~aAl~sflsF~ig~liPLLPf~~~~~~~~~~~~s~~~~~~~L~~lG~ 198 (234)
T cd02433 148 GNPWSAAVSSFLLFALGALIPVLPFLFGMSGLAALVLSVLLVGLALLATGA 198 (234)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHH
Confidence 4566667788888888888889999875432 233333334445555553
No 8
>cd08816 CARD_RIG-I_1 Caspase activation and recruitment domain found in RIG-I, first repeat. Caspase activation and recruitment domain (CARD) found in RIG-I (Retinoic acid Inducible Gene I, also known as Ddx58), first repeat. RIG-I is a cytoplasmic RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. RIG-I contains two N-terminal CARD domains and a C-terminal RNA helicase. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, RIG-I recognizes different sets of viruses compared to MDA5, a related RNA helicase. RIG-I associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction doma
Probab=45.73 E-value=61 Score=26.44 Aligned_cols=83 Identities=16% Similarity=0.227 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHhcccCCCCCcchhhhcCCHHHHHHHhcCCCc-HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHhhhh
Q 017883 219 RYIMAFPVALKGHVICDSDVSGDLQDLLDADDLAIVLDSKHR-PRCIIEFISQSLQLLNLEATKQNMLESKISCFHEGIG 297 (364)
Q Consensus 219 r~iiAf~~aLk~hLR~~~~~~~eL~~lL~~~el~~l~~a~n~-P~~il~~ls~~l~~~~l~~~~~~~m~~~l~~l~d~~G 297 (364)
+.+-||.--+|+-|+.. -+-.-+..++++++++.+...+|+ |....+..-..+.++.-.+.-+.-+|..-+. +-.|
T Consensus 6 ~nL~af~~yi~ktl~P~-yIl~~m~~~~~~e~v~~I~aEe~kg~~~AaqlfL~~l~~lee~GWFqafLDaL~~a--gY~g 82 (89)
T cd08816 6 RNLQRFRDYIKKILRPS-YILGFMTTWLEDEEVERILSEEEKGVTSAAQLFLDYVLKLEEEGWFQAFLDALYAA--GYTG 82 (89)
T ss_pred HHHHHHHHHHHHhhchH-HHHHHHHHhcCHHHHHHHHHHhccChHHHHHHHHHHHHHHccccHHHHHHHHHHhc--Cccc
Confidence 34557888888888743 244567888999999988776554 7777777766666654444444333332221 3456
Q ss_pred hhhhhcC
Q 017883 298 VCEQLMG 304 (364)
Q Consensus 298 ~cERI~~ 304 (364)
=||-|.+
T Consensus 83 l~eai~~ 89 (89)
T cd08816 83 LCEAIES 89 (89)
T ss_pred HHHHhcC
Confidence 6777753
No 9
>PF10947 DUF2628: Protein of unknown function (DUF2628) ; InterPro: IPR024399 Some members in this family of proteins have been annotated as YigF. Their function is currently unknown.
Probab=29.44 E-value=1.3e+02 Score=24.66 Aligned_cols=63 Identities=14% Similarity=-0.029 Sum_probs=37.7
Q ss_pred HHHHhcchhhhhhhHHHHHHHHHHHHHHHHHhhhccccCCCCcccccccCCchhHhHHHHHHHHHHhcchhHHHH
Q 017883 105 HLLSSLSSRVILSLIPPVIAFTMVAVVIASYNSALDSHLLPGFLPVLRASSLPYQLTAPALALLLVFRTEASYSR 179 (364)
Q Consensus 105 ~ll~~~~ssVl~~i~~~vl~~~~~a~~V~~~~~~~~~~~~p~~~p~l~~~~~p~sllg~aLsLLLVFRtNtAY~R 179 (364)
.+++.+==-..++.+...++..+..++..++...++ ........++.+++++.+++-|.-|-|
T Consensus 42 Af~f~~~w~l~r~mw~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~l~l~~~~~~g~~~n~~y~~ 104 (108)
T PF10947_consen 42 AFFFGPLWLLYRKMWLYAIIFLALLVALAIILILLG------------FPPGLGLGLSLAISLFFGMFANYWYYR 104 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------------chHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444433334566777666666666665555544321 011222367888899999999988865
No 10
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=26.95 E-value=1.2e+02 Score=27.12 Aligned_cols=27 Identities=33% Similarity=0.566 Sum_probs=18.1
Q ss_pred HhHHHHHHHHHHhcchhHHHHHHHHHHHHHH
Q 017883 159 QLTAPALALLLVFRTEASYSRFVDGKKAWTQ 189 (364)
Q Consensus 159 sllg~aLsLLLVFRtNtAY~RwwEaRklWG~ 189 (364)
.++|+++|+++++| |+|--+.|..|--
T Consensus 110 ~~lg~~l~fl~~r~----ysRkl~~~~~~Qp 136 (150)
T COG3086 110 AFLGLALGFLLARR----YSRKLAKRTEWQP 136 (150)
T ss_pred HHHHHHHHHHHHHH----HHHHhhhcccCCC
Confidence 35666666666654 8888888776643
No 11
>PF11696 DUF3292: Protein of unknown function (DUF3292); InterPro: IPR021709 This eukaryotic family of proteins has no known function.
Probab=25.82 E-value=79 Score=34.62 Aligned_cols=68 Identities=18% Similarity=0.229 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHhhhhhhhhhcCC--CCchhhHHHHHHHHHHHHHHhhHHhhhcc---CcchHHHHHHHHHHHHH
Q 017883 282 QNMLESKISCFHEGIGVCEQLMGI--PIPLSYTRLTSRFLVLWHLTLPIILWDDC---HWIVVPATFISAASLFC 351 (364)
Q Consensus 282 ~~~m~~~l~~l~d~~G~cERI~~T--PiP~sYt~h~~~fl~lyll~LPF~Lv~~~---gW~tip~~~lia~~llG 351 (364)
...|...+..+.|..-..||..|- |.|. |-.+..|+-.. .+++|..|..-+ .++.=-.++.++|.|||
T Consensus 281 ~~~~~p~mh~l~di~Dt~ERfaNaLSPTpP-Fp~~~~RlRLa-~~l~p~~l~Sl~~ssy~~~K~~tF~~Gf~FFG 353 (642)
T PF11696_consen 281 WKKMRPIMHMLGDITDTWERFANALSPTPP-FPRHTPRLRLA-AILAPLLLASLFVSSYMFVKGTTFGFGFGFFG 353 (642)
T ss_pred HHhhhhHHHHHhhHHHHHHHHhhccCCCCC-CCCccHHHHHH-HHHHHHHHHHHHhhHHHHHHHHHHhhhHHhhc
Confidence 334555566667777788998874 5443 33444444444 466777776544 45666788999999999
No 12
>PLN02673 quinolinate synthetase A
Probab=25.22 E-value=1.1e+02 Score=33.94 Aligned_cols=48 Identities=31% Similarity=0.449 Sum_probs=30.5
Q ss_pred ccccCCCCCCCCCcCcccccc---cCCCC-CC---chhHHHHHHhhCCCchhhhh
Q 017883 30 TLTFPSKSPNPLTFKTLSCLE---SQSQS-ET---KTLTLISVLRAIPDWADRVK 77 (364)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~---~~~~~~~~~~~~~~~~d~~~ 77 (364)
++-++.-+||+-...|++|-+ |.+++ .. +.+.+++.++..++|-|.|+
T Consensus 49 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~e~lP~kl~eIveeF~~l~dWEeRYr 103 (724)
T PLN02673 49 CIQSPPPDSAPSNASPFSCSAVAFSPSQTTELVPCKLQRLIKEFKSLTEPVDRVK 103 (724)
T ss_pred eecCCCCCCCCCCCCccceeeeecCCCcccccCCHHHHHHHHHHHhCCCHHHHHH
Confidence 344555566665677776543 22222 12 45678888999999999886
No 13
>cd02432 Nodulin-21_like_1 Nodulin-21 and CCC1-related protein family. Nodulin-21_like_1: This is a family of proteins closely related to nodulin-21, a plant nodule-specific protein that may be involved in symbiotic nitrogen fixation. This family is also related to CCC1, a yeast vacuole transmembrane protein that functions as an iron and manganese transporter.
Probab=23.77 E-value=5.1e+02 Score=24.34 Aligned_cols=30 Identities=17% Similarity=-0.002 Sum_probs=24.7
Q ss_pred CCCCchhhHHHHHHHHHHHHHHhhHHhhhc
Q 017883 304 GIPIPLSYTRLTSRFLVLWHLTLPIILWDD 333 (364)
Q Consensus 304 ~TPiP~sYt~h~~~fl~lyll~LPF~Lv~~ 333 (364)
..|+--+.+...+.++...+=+|||.+.+.
T Consensus 134 ~~p~~aal~s~~sf~lg~liPllpy~~~~~ 163 (218)
T cd02432 134 ANPWQAALASAISFSVGALLPLLAILLAPA 163 (218)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 467777888888999999999999987654
No 14
>PF13096 CENP-P: CENP-A-nucleosome distal (CAD) centromere subunit, CENP-P
Probab=23.32 E-value=58 Score=29.84 Aligned_cols=21 Identities=33% Similarity=0.642 Sum_probs=19.3
Q ss_pred HHHHHhcchhHHHHHHHHHHH
Q 017883 166 ALLLVFRTEASYSRFVDGKKA 186 (364)
Q Consensus 166 sLLLVFRtNtAY~RwwEaRkl 186 (364)
.|++-||+=.+|.+|.|-||-
T Consensus 60 ~L~lFFrsl~~~aew~e~R~~ 80 (177)
T PF13096_consen 60 DLLLFFRSLHSFAEWCEHRKR 80 (177)
T ss_pred cHHHHHHHHHHHHHHHHHHHH
Confidence 489999999999999999984
No 15
>COG0818 DgkA Diacylglycerol kinase [Cell envelope biogenesis, outer membrane]
Probab=23.29 E-value=2.3e+02 Score=24.64 Aligned_cols=49 Identities=10% Similarity=-0.026 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHhhHHhhhccCcchHHHHHHHHHHHHHHHHHHHHhhc
Q 017883 313 RLTSRFLVLWHLTLPIILWDDCHWIVVPATFISAASLFCIEEVSLSYLF 361 (364)
Q Consensus 313 ~h~~~fl~lyll~LPF~Lv~~~gW~tip~~~lia~~llGIeeIg~eIE~ 361 (364)
+-.++=+++.++.+|++++=...+.......+..+..+.+|-+-+-||-
T Consensus 30 ~afR~e~~~~~~~i~~~~~l~~~~~e~lll~~si~lvl~vEllNTAIEa 78 (123)
T COG0818 30 AAFRQELLAALVALVLAFFLGVSAIEWLLLILSIFLVLIVELLNTAIEA 78 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667889999999999999998888888888999999999888884
No 16
>PF15278 Sec3_C_2: Sec3 exocyst complex subunit
Probab=23.24 E-value=74 Score=25.33 Aligned_cols=25 Identities=12% Similarity=0.278 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhcCC
Q 017883 281 KQNMLESKISCFHEGIGVCEQLMGI 305 (364)
Q Consensus 281 ~~~~m~~~l~~l~d~~G~cERI~~T 305 (364)
+.+++.+.-+.|.|+..|||-|..|
T Consensus 40 ~~~~~~~i~~~L~D~~~GC~si~ST 64 (86)
T PF15278_consen 40 QKMQAQNIQSQLQDCIAGCDSIFST 64 (86)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHhH
Confidence 4556677778889999999999876
No 17
>PF06210 DUF1003: Protein of unknown function (DUF1003); InterPro: IPR010406 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=22.15 E-value=2.6e+02 Score=23.56 Aligned_cols=44 Identities=23% Similarity=0.199 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhccccCCCCcccccccCCchhHhHHHHHHHHHH
Q 017883 119 IPPVIAFTMVAVVIASYNSALDSHLLPGFLPVLRASSLPYQLTAPALALLLV 170 (364)
Q Consensus 119 ~~~vl~~~~~a~~V~~~~~~~~~~~~p~~~p~l~~~~~p~sllg~aLsLLLV 170 (364)
++-++.++++-+++..+|.... +..+..+.||.++..++|+.-.
T Consensus 4 ~~Fi~~~~~~~~~Wi~~N~~~~--------~~~~fDpyPFilLnl~lS~~Aa 47 (108)
T PF06210_consen 4 WTFIIIFTVFLAVWILLNILAP--------PRPAFDPYPFILLNLVLSLEAA 47 (108)
T ss_pred HHHHHHHHHHHHHHHHHHhhcc--------ccCCCCCccHHHHHHHHHHHHH
Confidence 4556666667677777776331 1123456788888888887654
No 18
>PRK09333 30S ribosomal protein S19e; Provisional
Probab=20.73 E-value=62 Score=28.99 Aligned_cols=38 Identities=29% Similarity=0.359 Sum_probs=25.4
Q ss_pred chhHHHHHHh-----hCCCchhhhhhhhccccccCCChhhHHhhh
Q 017883 58 KTLTLISVLR-----AIPDWADRVKERGVKQKRTLYSHEKWVEHR 97 (364)
Q Consensus 58 ~~~~~~~~~~-----~~~~~~d~~~e~~~~~~r~~y~~~~W~~hr 97 (364)
..+.+.+.|+ .+|+|+|-+|-+..+ -++-+|. ||...|
T Consensus 12 ~I~~~A~~LK~~~ki~~P~W~~~vKTg~~k-E~~P~~~-DW~Y~R 54 (150)
T PRK09333 12 LIERLAEYLKNVDEIKPPEWAAFVKTGVHK-ERPPEQE-DWWYVR 54 (150)
T ss_pred HHHHHHHHHHhcCCcCCCcchhhhcccccc-cCCCCCC-chHHHH
Confidence 3455555555 379999999976655 5556674 487553
Done!