Query 017883
Match_columns 364
No_of_seqs 186 out of 694
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 06:27:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017883.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017883hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u5c_T 40S ribosomal protein S 36.3 11 0.00036 32.4 0.9 38 59-97 15-57 (144)
2 2yka_B ORF57 protein, 52 kDa i 29.2 17 0.00058 21.8 0.0 14 69-82 8-21 (26)
3 3iz6_S 40S ribosomal protein S 22.4 24 0.00081 30.3 0.7 27 69-97 33-59 (146)
4 4gof_A Small glutamine-rich te 18.8 2.4E+02 0.0081 19.8 5.2 38 261-298 6-43 (52)
5 1hji_B NUN-protein; bacterioph 15.6 1.6E+02 0.0056 17.3 3.0 20 211-230 6-25 (26)
6 2zt9_E Cytochrome B6-F complex 13.7 88 0.003 19.8 1.6 14 160-173 14-27 (31)
7 2xzm_T RPS19E; ribosome, trans 13.3 52 0.0018 28.4 0.6 27 69-97 34-60 (155)
8 4asv_A Small glutamine-rich te 12.8 3.4E+02 0.012 21.3 5.2 38 261-298 23-60 (92)
9 1vf5_E Protein PET L; photosyn 12.5 84 0.0029 20.1 1.3 14 160-173 15-28 (32)
10 2lxb_A Small glutamine-rich te 12.2 3.8E+02 0.013 20.1 5.2 38 261-298 11-48 (74)
No 1
>3u5c_T 40S ribosomal protein S19-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_S 3o30_M 3o2z_M 3u5g_T 3jyv_T*
Probab=36.32 E-value=11 Score=32.39 Aligned_cols=38 Identities=24% Similarity=0.354 Sum_probs=27.1
Q ss_pred hhHHHHHHh-----hCCCchhhhhhhhccccccCCChhhHHhhh
Q 017883 59 TLTLISVLR-----AIPDWADRVKERGVKQKRTLYSHEKWVEHR 97 (364)
Q Consensus 59 ~~~~~~~~~-----~~~~~~d~~~e~~~~~~r~~y~~~~W~~hr 97 (364)
.+++.+.|+ .+|+|+|-+|-...+ -++-||.|.|...|
T Consensus 15 I~~~A~~LK~~gki~~P~W~d~vKTg~~k-El~P~d~D~W~Y~R 57 (144)
T 3u5c_T 15 INAYASFLQRQGKLEVPGYVDIVKTSSGN-EMPPQDAEGWFYKR 57 (144)
T ss_dssp HHHHHHHHHHHCCCCCTTTTTSCCSCTTC-SSCCSSCSSSHHHH
T ss_pred HHHHHHHHHHcCCCCCCchHhHhhccccc-cCCCCCCcchHHHH
Confidence 445555554 379999999975555 66778887798665
No 2
>2yka_B ORF57 protein, 52 kDa immediate-early phosphoprotein; RNA binding protein-transcription complex, RNA binding prote; NMR {Saimiriine herpesvirus 2}
Probab=29.24 E-value=17 Score=21.80 Aligned_cols=14 Identities=43% Similarity=0.850 Sum_probs=11.5
Q ss_pred CCCchhhhhhhhcc
Q 017883 69 IPDWADRVKERGVK 82 (364)
Q Consensus 69 ~~~~~d~~~e~~~~ 82 (364)
-|.|+|.+.|...+
T Consensus 8 r~nWs~RV~E~~~~ 21 (26)
T 2yka_B 8 KTSWADRVREAAAQ 21 (26)
Confidence 48999999997655
No 3
>3iz6_S 40S ribosomal protein S19 (S19E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=22.40 E-value=24 Score=30.27 Aligned_cols=27 Identities=33% Similarity=0.706 Sum_probs=20.0
Q ss_pred CCCchhhhhhhhccccccCCChhhHHhhh
Q 017883 69 IPDWADRVKERGVKQKRTLYSHEKWVEHR 97 (364)
Q Consensus 69 ~~~~~d~~~e~~~~~~r~~y~~~~W~~hr 97 (364)
+|+|+|-+|-...+ -++-||. ||...|
T Consensus 33 ~P~W~d~vKTg~~K-El~P~d~-DW~Y~R 59 (146)
T 3iz6_S 33 LPEWVDIVKTARFK-ELPPYDP-DWYYTR 59 (146)
T ss_dssp CTTTGGGCCSSSSC-SSSTHHH-HTHHHH
T ss_pred CCchHHHhhccccc-cCCCCCC-chHHHH
Confidence 79999999976555 5566676 588664
No 4
>4gof_A Small glutamine-rich tetratricopeptide repeat-CON protein alpha; four-helix bundle, protein-protein interaction, UBL4A ubiqui domain; 1.35A {Homo sapiens} PDB: 4goe_A 4god_A
Probab=18.79 E-value=2.4e+02 Score=19.79 Aligned_cols=38 Identities=32% Similarity=0.543 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHhhhhh
Q 017883 261 PRCIIEFISQSLQLLNLEATKQNMLESKISCFHEGIGV 298 (364)
Q Consensus 261 P~~il~~ls~~l~~~~l~~~~~~~m~~~l~~l~d~~G~ 298 (364)
...|++.+++.+....+++.....|+-.++++.++.|-
T Consensus 6 a~sIi~FL~~~~~~~~~s~D~~ESleVAiqCi~~aF~v 43 (52)
T 4gof_A 6 AYAIIQFLHDQLRHGGLSSDAQESLEVAIQCLETAFGV 43 (52)
T ss_dssp HHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhcccCCcCHhHHHHHHHHHHHHHHHcCC
Confidence 35678889999998899999999999999999888763
No 5
>1hji_B NUN-protein; bacteriophage HK022, termination, peptide-RNA-complex, peptide-RNA-recognition; NMR {Bacteriophage HK022} SCOP: j.9.5.1
Probab=15.56 E-value=1.6e+02 Score=17.34 Aligned_cols=20 Identities=20% Similarity=0.207 Sum_probs=16.2
Q ss_pred hHHHHHHHHHHHHHHHHHHh
Q 017883 211 ECIKDSLLRYIMAFPVALKG 230 (364)
Q Consensus 211 ~~~~~~l~r~iiAf~~aLk~ 230 (364)
..+++++.||---.+||||.
T Consensus 6 srdrrriarwekriayalkn 25 (26)
T 1hji_B 6 SRDRRRIARWEKRIAYALKN 25 (26)
T ss_dssp HHHHHHHHHHHHHHHHHHHC
T ss_pred hhhHHHHHHHHHHHHHHHhc
Confidence 45678899998888888884
No 6
>2zt9_E Cytochrome B6-F complex subunit 6; photosynthesis, heme B,2Fe-2S protei cytochrome F; HET: HEM UMQ CLA OPC SQD BCR; 3.00A {Nostoc SP}
Probab=13.69 E-value=88 Score=19.82 Aligned_cols=14 Identities=36% Similarity=0.453 Sum_probs=11.8
Q ss_pred hHHHHHHHHHHhcc
Q 017883 160 LTAPALALLLVFRT 173 (364)
Q Consensus 160 llg~aLsLLLVFRt 173 (364)
.+|.++|+++++|.
T Consensus 14 ~~~iA~GL~fGLrs 27 (31)
T 2zt9_E 14 FTGIAAGLLFGLRS 27 (31)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 46899999999984
No 7
>2xzm_T RPS19E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_T
Probab=13.25 E-value=52 Score=28.41 Aligned_cols=27 Identities=19% Similarity=0.383 Sum_probs=20.1
Q ss_pred CCCchhhhhhhhccccccCCChhhHHhhh
Q 017883 69 IPDWADRVKERGVKQKRTLYSHEKWVEHR 97 (364)
Q Consensus 69 ~~~~~d~~~e~~~~~~r~~y~~~~W~~hr 97 (364)
+|+|+|-+|-...+ -++-||. ||..-|
T Consensus 34 ~P~W~d~vKTg~~K-ElaP~d~-DW~YiR 60 (155)
T 2xzm_T 34 IPEFTQWTTTSVAR-ELAPQDS-DWVYIR 60 (155)
T ss_dssp CCHHHHSCCCSSSC-SSCCSST-THHHHH
T ss_pred CCchHhhhhccccc-cCCCCCC-chHHHH
Confidence 79999999976555 5666774 588664
No 8
>4asv_A Small glutamine-rich tetratricopeptide repeat-CON protein 2; chaperone, membrane, tail-anchored, post-translational targe; NMR {Saccharomyces cerevisiae} PDB: 4asw_A
Probab=12.76 E-value=3.4e+02 Score=21.28 Aligned_cols=38 Identities=16% Similarity=0.406 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHhhhhh
Q 017883 261 PRCIIEFISQSLQLLNLEATKQNMLESKISCFHEGIGV 298 (364)
Q Consensus 261 P~~il~~ls~~l~~~~l~~~~~~~m~~~l~~l~d~~G~ 298 (364)
...|++.+++.++...+++.....|+-.++++.++.|-
T Consensus 23 A~sIIdFL~~sv~~~~ls~D~~ESLEVAIqCI~~AF~V 60 (92)
T 4asv_A 23 AALIVNYFSSIVEKKEISEDGADSLNVAMDCISEAFGF 60 (92)
T ss_dssp HHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhcccCCcCHHHHHHHHHHHHHHHHHhCC
Confidence 45788999999999899999999999999999888764
No 9
>1vf5_E Protein PET L; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.23.24.1 PDB: 2d2c_E* 2e74_E* 2e75_E* 2e76_E*
Probab=12.49 E-value=84 Score=20.06 Aligned_cols=14 Identities=7% Similarity=0.365 Sum_probs=11.9
Q ss_pred hHHHHHHHHHHhcc
Q 017883 160 LTAPALALLLVFRT 173 (364)
Q Consensus 160 llg~aLsLLLVFRt 173 (364)
.+|.|+||++++|.
T Consensus 15 ~f~iA~GL~fGlrs 28 (32)
T 1vf5_E 15 FFGIAVGIIFAIKS 28 (32)
T ss_dssp HHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHHH
Confidence 46899999999985
No 10
>2lxb_A Small glutamine-rich tetratricopeptide repeat-CON protein 2; four-helix bundle, protein-protein interaction, GET5 binding GET pathway; NMR {Saccharomyces cerevisiae} PDB: 2lxc_B
Probab=12.22 E-value=3.8e+02 Score=20.08 Aligned_cols=38 Identities=16% Similarity=0.406 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHhhhhh
Q 017883 261 PRCIIEFISQSLQLLNLEATKQNMLESKISCFHEGIGV 298 (364)
Q Consensus 261 P~~il~~ls~~l~~~~l~~~~~~~m~~~l~~l~d~~G~ 298 (364)
...|++.+++.++...+++.....|+-.++++.++.+-
T Consensus 11 a~sIi~FL~~~~~~~~ls~D~~ESLeVAiqCI~~aF~v 48 (74)
T 2lxb_A 11 AALIVNYFSSIVEKKEISEDGADSLNVAMDCISEAFGF 48 (74)
T ss_dssp HHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhcccCCcCHHHHHHHHHHHHHHHHHhCC
Confidence 45678888888888888888888999999888888764
Done!