Query 017883
Match_columns 364
No_of_seqs 186 out of 694
Neff 5.9
Searched_HMMs 13730
Date Mon Mar 25 06:27:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017883.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/017883hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2v7fa1 a.4.5.84 (A:2-150) Rib 17.9 15 0.0011 29.6 0.5 37 59-97 12-53 (149)
2 d1qjta_ a.39.1.6 (A:) Eps15 {M 17.9 1E+02 0.0074 21.8 5.4 68 243-310 25-95 (99)
3 d2axth1 f.23.33.1 (H:2-65) Pho 14.1 86 0.0063 21.2 3.7 25 335-359 23-47 (64)
4 d1jb0i_ f.23.17.1 (I:) Subunit 11.7 60 0.0044 19.7 2.0 27 325-353 9-35 (38)
5 d1kqfb2 f.23.22.1 (B:246-290) 11.7 97 0.007 19.6 3.1 30 113-142 6-35 (45)
6 d1u00a1 a.8.4.1 (A:504-615) Ch 7.3 2.3E+02 0.017 20.3 4.4 39 259-297 31-71 (112)
7 d1ni5a4 d.229.1.1 (A:227-314) 7.2 2.6E+02 0.019 19.0 4.5 37 259-295 23-59 (88)
8 d1ng7a_ a.178.1.1 (A:) Soluble 7.1 72 0.0052 21.4 1.1 28 40-70 3-30 (60)
9 d1dkza1 a.8.4.1 (A:507-603) Dn 6.9 2.5E+02 0.018 19.5 4.3 42 257-298 29-72 (97)
10 d2ifxa1 d.58.4.19 (A:1-108) Hy 6.7 88 0.0064 22.6 1.5 19 171-189 69-89 (108)
No 1
>d2v7fa1 a.4.5.84 (A:2-150) Ribosomal protein S19e {Pyrococcus abyssi [TaxId: 29292]}
Probab=17.89 E-value=15 Score=29.56 Aligned_cols=37 Identities=27% Similarity=0.397 Sum_probs=21.1
Q ss_pred hhHHHHHHh-----hCCCchhhhhhhhccccccCCChhhHHhhh
Q 017883 59 TLTLISVLR-----AIPDWADRVKERGVKQKRTLYSHEKWVEHR 97 (364)
Q Consensus 59 ~~~~~~~~~-----~~~~~~d~~~e~~~~~~r~~y~~~~W~~hr 97 (364)
.+++.+.|. .+|+|+|-+|-..++.+.| ++ +||...|
T Consensus 12 I~~lA~~LK~~~ki~~P~W~~~vKTg~~kE~~P-~~-~DW~y~R 53 (149)
T d2v7fa1 12 VERVAQRLKEIPEIKPPEWAPFVKTGRHKERLP-EQ-EDWWYYR 53 (149)
T ss_dssp HHHHHHHHTTCTTCCCCSCGGGCCC------CH-HH-HTHHHHH
T ss_pred HHHHHHHHHhcCCCCCCcchhhhcccccccCCC-CC-CchHHHH
Confidence 344555554 3799999999877775555 55 6788664
No 2
>d1qjta_ a.39.1.6 (A:) Eps15 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=17.87 E-value=1e+02 Score=21.79 Aligned_cols=68 Identities=18% Similarity=0.163 Sum_probs=46.3
Q ss_pred hhcCCHHHHHHHhcCCCcHHHHHHHHHHHHHh---ccCChHHHHHHHHHHHHHHhhhhhhhhhcCCCCchh
Q 017883 243 QDLLDADDLAIVLDSKHRPRCIIEFISQSLQL---LNLEATKQNMLESKISCFHEGIGVCEQLMGIPIPLS 310 (364)
Q Consensus 243 ~~lL~~~el~~l~~a~n~P~~il~~ls~~l~~---~~l~~~~~~~m~~~l~~l~d~~G~cERI~~TPiP~s 310 (364)
.+.++.+|+..+....+.|...+..|-+.... +.++-.+.......+........--..+..+++|..
T Consensus 25 ~G~i~~~e~~~~l~~s~L~~~~L~~i~~~~D~d~dG~L~~~EF~~am~Li~~~q~g~~l~~~~l~~~~p~P 95 (99)
T d1qjta_ 25 TGRVLALDAAAFLKKSGLPDLILGKIWDLADTDGKGVLSKQEFFVALRLVACAQNGLEVSLSSLSLAVPPP 95 (99)
T ss_dssp SSCCCSHHHHHHHHTSSSCHHHHHHHHHHHCCSSSSSCCSHHHHHHHHHHHHHTTTCCSSGGGCSSCCCCC
T ss_pred CCcccHHHHHHHHHHcCCcHHHHHHHHHHHcCCCCCccCHHHHHHHHHHHHHHHcCCCCCccccccCCCCC
Confidence 45677788888888888998888888777654 467777776665666554444444456677777754
No 3
>d2axth1 f.23.33.1 (H:2-65) Photosystem II reaction center protein H, PsbH {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=14.06 E-value=86 Score=21.22 Aligned_cols=25 Identities=12% Similarity=0.188 Sum_probs=17.7
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHh
Q 017883 335 HWIVVPATFISAASLFCIEEVSLSY 359 (364)
Q Consensus 335 gW~tip~~~lia~~llGIeeIg~eI 359 (364)
||.|-|++.+...+|.-.--|=-||
T Consensus 23 GWGTTplMgv~m~Lf~vfl~iiLei 47 (64)
T d2axth1 23 GWGTTPLMAVFMGLFLVFLLIILEI 47 (64)
T ss_dssp TTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcCccHHHHHHHHHHHHHHHHHHHH
Confidence 7999999887776666555554444
No 4
>d1jb0i_ f.23.17.1 (I:) Subunit VIII of photosystem I reaction centre, PsaI {Synechococcus elongatus [TaxId: 32046]}
Probab=11.67 E-value=60 Score=19.72 Aligned_cols=27 Identities=22% Similarity=0.381 Sum_probs=18.3
Q ss_pred HhhHHhhhccCcchHHHHHHHHHHHHHHH
Q 017883 325 TLPIILWDDCHWIVVPATFISAASLFCIE 353 (364)
Q Consensus 325 ~LPF~Lv~~~gW~tip~~~lia~~llGIe 353 (364)
.||..+++..+|+.+.++ ++.+|+-||
T Consensus 9 yLPwI~iPvv~wl~p~vv--MglLFiyIE 35 (38)
T d1jb0i_ 9 FLPWIFIPVVCWLMPTVV--MGLLFLYIE 35 (38)
T ss_dssp THHHHHHHHHHTHHHHHH--HHHHHHHHH
T ss_pred hcchhHHHHHHHHHHHHH--HHHHheeee
Confidence 478888888888776543 455666555
No 5
>d1kqfb2 f.23.22.1 (B:246-290) Iron-sulfur subunit of formate dehydrogenase N, transmembrane anchor {Escherichia coli [TaxId: 562]}
Probab=11.67 E-value=97 Score=19.62 Aligned_cols=30 Identities=10% Similarity=0.058 Sum_probs=22.9
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHhhhcccc
Q 017883 113 RVILSLIPPVIAFTMVAVVIASYNSALDSH 142 (364)
Q Consensus 113 sVl~~i~~~vl~~~~~a~~V~~~~~~~~~~ 142 (364)
..++.++.|+..++..+++++.+.+++..|
T Consensus 6 ~lWKgv~Kpl~~~~~~~~~~~~~fHYv~vG 35 (45)
T d1kqfb2 6 SLWKGALKPLAAAGFIATFAGLIFHYIGIG 35 (45)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHhhheeC
Confidence 346778899999998888887777666544
No 6
>d1u00a1 a.8.4.1 (A:504-615) Chaperone protein hscA (Hsc66) {Escherichia coli [TaxId: 562]}
Probab=7.30 E-value=2.3e+02 Score=20.34 Aligned_cols=39 Identities=13% Similarity=0.156 Sum_probs=17.3
Q ss_pred CcHHHHHHHHHHHHHhc--cCChHHHHHHHHHHHHHHhhhh
Q 017883 259 HRPRCIIEFISQSLQLL--NLEATKQNMLESKISCFHEGIG 297 (364)
Q Consensus 259 n~P~~il~~ls~~l~~~--~l~~~~~~~m~~~l~~l~d~~G 297 (364)
|....++..+...|... .++......++..+..+...+.
T Consensus 31 n~ae~~i~~~e~~L~e~~~~L~~~e~~~i~~~i~~l~~~l~ 71 (112)
T d1u00a1 31 VEAARVLESLHGALAADAALLSAAERQVIDDAAAHLSEVAQ 71 (112)
T ss_dssp HHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhHhhCCHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444332 3444455555555554444443
No 7
>d1ni5a4 d.229.1.1 (A:227-314) tRNA-Ile-lysidine synthetase, TilS, substrate-binding domain {Escherichia coli [TaxId: 562]}
Probab=7.20 E-value=2.6e+02 Score=19.00 Aligned_cols=37 Identities=11% Similarity=-0.093 Sum_probs=28.3
Q ss_pred CcHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHhh
Q 017883 259 HRPRCIIEFISQSLQLLNLEATKQNMLESKISCFHEG 295 (364)
Q Consensus 259 n~P~~il~~ls~~l~~~~l~~~~~~~m~~~l~~l~d~ 295 (364)
..+....+.++.+++..++..+...++++.+.++..+
T Consensus 23 Ls~~R~~nlLR~WL~~~~~~~Ps~~~L~ei~~ql~~a 59 (88)
T d1ni5a4 23 MSDARRAAIIRRWLAGQNAPMPSRDALVRIWQEVALA 59 (88)
T ss_dssp SCHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHTTTS
T ss_pred CCHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhC
Confidence 4466678888889998877777777888888877554
No 8
>d1ng7a_ a.178.1.1 (A:) Soluble domain of poliovirus core protein 3a {Poliovirus type 1, strain Mahoney [TaxId: 12080]}
Probab=7.08 E-value=72 Score=21.43 Aligned_cols=28 Identities=25% Similarity=0.329 Sum_probs=18.9
Q ss_pred CCCcCcccccccCCCCCCchhHHHHHHhhCC
Q 017883 40 PLTFKTLSCLESQSQSETKTLTLISVLRAIP 70 (364)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (364)
+|+|++|.+-- ..++. |+....||++|-
T Consensus 3 Pp~yk~l~I~v--~~tPp-P~aI~DLLkSVD 30 (60)
T d1ng7a_ 3 PLQYKDLKIDI--KTSPP-PECINDLLQAVD 30 (60)
T ss_dssp SSCCCCCSCCC--SCCCS-STTTHHHHHHHC
T ss_pred CCcccceEeee--CCCCC-ChHHHHHHHhcC
Confidence 45788875532 23333 678889999997
No 9
>d1dkza1 a.8.4.1 (A:507-603) DnaK {Escherichia coli [TaxId: 562]}
Probab=6.91 E-value=2.5e+02 Score=19.53 Aligned_cols=42 Identities=10% Similarity=0.240 Sum_probs=25.2
Q ss_pred CCCcHHHHHHHHHHHHHhc--cCChHHHHHHHHHHHHHHhhhhh
Q 017883 257 SKHRPRCIIEFISQSLQLL--NLEATKQNMLESKISCFHEGIGV 298 (364)
Q Consensus 257 a~n~P~~il~~ls~~l~~~--~l~~~~~~~m~~~l~~l~d~~G~ 298 (364)
+.|.-..++..+...+... .++......+++.+..+-+++.+
T Consensus 29 ~rn~ae~~i~~~e~~l~e~~~~l~~~~k~~i~~~i~~l~~~l~~ 72 (97)
T d1dkza1 29 TRNQGDHLLHSTRKQVEEAGDKLPADDKTAIESALTALETALKG 72 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHhc
Confidence 3344455555555555443 57777777777777777666554
No 10
>d2ifxa1 d.58.4.19 (A:1-108) Hypothetical protein Reut_A1503 {Ralstonia eutropha [TaxId: 106590]}
Probab=6.71 E-value=88 Score=22.62 Aligned_cols=19 Identities=32% Similarity=0.850 Sum_probs=15.5
Q ss_pred hcchhHHHHHHH--HHHHHHH
Q 017883 171 FRTEASYSRFVD--GKKAWTQ 189 (364)
Q Consensus 171 FRtNtAY~RwwE--aRklWG~ 189 (364)
|.+...|++|-+ -||+|=.
T Consensus 69 f~~e~~y~~ym~sdirkawfe 89 (108)
T d2ifxa1 69 FKDDAAYATYMASDIRKAWFE 89 (108)
T ss_dssp ESSHHHHHHHHHCHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHHHHH
Confidence 788999999986 5888843
Done!