BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017884
(364 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|224066809|ref|XP_002302226.1| predicted protein [Populus trichocarpa]
gi|222843952|gb|EEE81499.1| predicted protein [Populus trichocarpa]
Length = 363
Score = 649 bits (1675), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 312/361 (86%), Positives = 336/361 (93%), Gaps = 1/361 (0%)
Query: 4 AETVSLMDFDEDENQNLKPKDN-GKNVIVSGTPPDIKASPWVEKYRPQSLADVAAHRDIV 62
AE ++LMD DE+ENQN K N GK V+V TPP KA+PWVEKYRPQSLADVAAHRDI+
Sbjct: 2 AEAIALMDIDEEENQNHLSKPNKGKKVVVPATPPGGKATPWVEKYRPQSLADVAAHRDII 61
Query: 63 DTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVR 122
DTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVR
Sbjct: 62 DTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVR 121
Query: 123 QQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVN 182
+QIQDFASTQSFSFG KASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICN VN
Sbjct: 122 KQIQDFASTQSFSFGAKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNHVN 181
Query: 183 KIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNI 242
KIIPALQSRCTRFRFAPL+P+HV ERLKHVIEAEGLDV E GL AL L NGDMRKALNI
Sbjct: 182 KIIPALQSRCTRFRFAPLDPMHVGERLKHVIEAEGLDVPESGLEALKCLSNGDMRKALNI 241
Query: 243 LQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVD 302
LQSTHMASQQITEE VYLCTGNPLP+D++QI++WLLNESFA+S+KRISE+K RKGLALVD
Sbjct: 242 LQSTHMASQQITEETVYLCTGNPLPQDVQQITHWLLNESFAESYKRISEIKTRKGLALVD 301
Query: 303 IVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDKLQLGSIISTFTQARSAIVAA 362
IVREVTMFVFKIKM SD+RV L+NDLADIEYRLSFGCNDKLQLGS+I++FT+ARSA+VAA
Sbjct: 302 IVREVTMFVFKIKMQSDIRVPLINDLADIEYRLSFGCNDKLQLGSLIASFTRARSALVAA 361
Query: 363 A 363
A
Sbjct: 362 A 362
>gi|255558636|ref|XP_002520343.1| replication factor C / DNA polymerase III gamma-tau subunit,
putative [Ricinus communis]
gi|223540562|gb|EEF42129.1| replication factor C / DNA polymerase III gamma-tau subunit,
putative [Ricinus communis]
Length = 360
Score = 643 bits (1659), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 313/364 (85%), Positives = 338/364 (92%), Gaps = 8/364 (2%)
Query: 4 AETVSLMDFDED--ENQNLKPKDN-GKNVIVSGTPPDIKASPWVEKYRPQSLADVAAHRD 60
A+ V++MD DED E QN K N GKNV V D KA+PWVEKYRPQSLADVAAHRD
Sbjct: 2 ADVVTIMDIDEDVKEKQNQLSKPNKGKNVFV-----DTKATPWVEKYRPQSLADVAAHRD 56
Query: 61 IVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDV 120
IVDTIDRLT+ENRLPHLLLYGPPGTGKTSTILAVARKLYG QYHNMILELNASDDRGIDV
Sbjct: 57 IVDTIDRLTNENRLPHLLLYGPPGTGKTSTILAVARKLYGVQYHNMILELNASDDRGIDV 116
Query: 121 VRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQ 180
VRQQIQDFASTQSFSF K++VKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICN
Sbjct: 117 VRQQIQDFASTQSFSFDAKSAVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNH 176
Query: 181 VNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKAL 240
VNKIIPALQSRCTRFRFAPL+P+HVT+RLKHVIEAEGLDV E GLAA+VRL NGDMRKAL
Sbjct: 177 VNKIIPALQSRCTRFRFAPLDPIHVTDRLKHVIEAEGLDVPEPGLAAVVRLSNGDMRKAL 236
Query: 241 NILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLAL 300
NILQSTHMASQQITEEAV+LCTGNPLPKDI+QISYWLLNESFA+SFKRISE+K +KGLAL
Sbjct: 237 NILQSTHMASQQITEEAVHLCTGNPLPKDIQQISYWLLNESFAESFKRISEIKTKKGLAL 296
Query: 301 VDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDKLQLGSIISTFTQARSAIV 360
VDIVREVTMFVFKIKMPSDVRV+L+ND+ADIEYRLSFGC+DKLQLGS++++FT ARSA+V
Sbjct: 297 VDIVREVTMFVFKIKMPSDVRVQLINDMADIEYRLSFGCSDKLQLGSLVASFTWARSALV 356
Query: 361 AAAK 364
AAAK
Sbjct: 357 AAAK 360
>gi|225459599|ref|XP_002285868.1| PREDICTED: replication factor C subunit 5 [Vitis vinifera]
gi|302141794|emb|CBI18997.3| unnamed protein product [Vitis vinifera]
Length = 360
Score = 643 bits (1659), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 310/350 (88%), Positives = 330/350 (94%), Gaps = 2/350 (0%)
Query: 4 AETVSLMDFDEDENQNLKPKDNGKNVIVSGTPPDIKASPWVEKYRPQSLADVAAHRDIVD 63
AE V++MD DE++N LK + GK+V+V G PPD KA+PWVEKYRPQSLADVAAHRDIVD
Sbjct: 2 AEAVTVMDIDEEDNHLLKA-NKGKSVVVGG-PPDRKATPWVEKYRPQSLADVAAHRDIVD 59
Query: 64 TIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQ 123
TIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYG Q+HNMILELNASDDRGIDVVRQ
Sbjct: 60 TIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGEQFHNMILELNASDDRGIDVVRQ 119
Query: 124 QIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNK 183
QIQDFASTQSFSFG K+SVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICN VNK
Sbjct: 120 QIQDFASTQSFSFGAKSSVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNHVNK 179
Query: 184 IIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNIL 243
IIPALQSRCTRFRFAPL+ VHVTERLKHVI AE LDV+E GLAALVRL +GDMRKALNIL
Sbjct: 180 IIPALQSRCTRFRFAPLDAVHVTERLKHVINAEKLDVSESGLAALVRLSSGDMRKALNIL 239
Query: 244 QSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDI 303
QSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESFA SF RISE+KMRKGLALVD+
Sbjct: 240 QSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESFAASFDRISEVKMRKGLALVDV 299
Query: 304 VREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDKLQLGSIISTFT 353
VREVTMFVFKIKMPSDVRV+L+NDLADIEYRLSFGCNDKLQLGS+I++FT
Sbjct: 300 VREVTMFVFKIKMPSDVRVQLINDLADIEYRLSFGCNDKLQLGSLIASFT 349
>gi|356515902|ref|XP_003526636.1| PREDICTED: replication factor C subunit 5-like [Glycine max]
Length = 361
Score = 635 bits (1637), Expect = e-179, Method: Compositional matrix adjust.
Identities = 310/361 (85%), Positives = 328/361 (90%), Gaps = 3/361 (0%)
Query: 4 AETVSLMDFDEDENQNLKPKDNGKNVIVSGTPPDI-KASPWVEKYRPQSLADVAAHRDIV 62
A+T MD D D P D GK+V+ +G PP KA PWVEKYRPQSL DVAAHRDIV
Sbjct: 2 AQTTHPMDID-DHTYTASP-DKGKSVVFAGNPPAAGKAIPWVEKYRPQSLDDVAAHRDIV 59
Query: 63 DTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVR 122
DTIDRLT+ENRLPHLLLYGPPGTGKTSTILAVARKLYG+QY NMILELNASDDRGIDVVR
Sbjct: 60 DTIDRLTTENRLPHLLLYGPPGTGKTSTILAVARKLYGSQYQNMILELNASDDRGIDVVR 119
Query: 123 QQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVN 182
QQIQDFASTQS SFGVK+SVKLVLLDEADAMTKDAQFALRRVIEKYTK+TRFALICN VN
Sbjct: 120 QQIQDFASTQSLSFGVKSSVKLVLLDEADAMTKDAQFALRRVIEKYTKSTRFALICNHVN 179
Query: 183 KIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNI 242
KIIPALQSRCTRFRFAPL+ VHVTERLKHVI+AEGLDV + GLAA VRL NGDMRKALNI
Sbjct: 180 KIIPALQSRCTRFRFAPLDAVHVTERLKHVIKAEGLDVEDSGLAAFVRLSNGDMRKALNI 239
Query: 243 LQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVD 302
LQSTHMASQQITEEAVYLCTGNPLPKDIE ISYWLLNE FADSFKRI EMK RKGLAL+D
Sbjct: 240 LQSTHMASQQITEEAVYLCTGNPLPKDIELISYWLLNEQFADSFKRIDEMKTRKGLALID 299
Query: 303 IVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDKLQLGSIISTFTQARSAIVAA 362
IVREVTMFVFKIKMPS VRV+LMNDLADIEYRLSFGCNDKLQLGS+I++FT+ARSA+VAA
Sbjct: 300 IVREVTMFVFKIKMPSAVRVQLMNDLADIEYRLSFGCNDKLQLGSVIASFTRARSALVAA 359
Query: 363 A 363
A
Sbjct: 360 A 360
>gi|449464168|ref|XP_004149801.1| PREDICTED: replication factor C subunit 5-like [Cucumis sativus]
gi|449499057|ref|XP_004160708.1| PREDICTED: replication factor C subunit 5-like [Cucumis sativus]
Length = 363
Score = 633 bits (1632), Expect = e-179, Method: Compositional matrix adjust.
Identities = 303/362 (83%), Positives = 330/362 (91%), Gaps = 1/362 (0%)
Query: 4 AETVSLMDFDEDENQNLKPKD-NGKNVIVSGTPPDIKASPWVEKYRPQSLADVAAHRDIV 62
+E +S+MD D+D N K GKNV P+ KA PWVEK+RP+SLADVAAHRDIV
Sbjct: 2 SEVISVMDIDDDNGNNEAEKAVKGKNVASPAAAPEGKAIPWVEKFRPKSLADVAAHRDIV 61
Query: 63 DTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVR 122
DTID+LTSENRLPHLLLYGPPGTGKTSTILAVARKLYG YHNMILELNASDDRGIDVVR
Sbjct: 62 DTIDKLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGTNYHNMILELNASDDRGIDVVR 121
Query: 123 QQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVN 182
QQIQDFASTQSFSFG KASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICN VN
Sbjct: 122 QQIQDFASTQSFSFGAKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNHVN 181
Query: 183 KIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNI 242
KIIPALQSRCTRFRFAPL+ HVTERL++VIEAE LDVTEGGLAALVRLC GDMRKALNI
Sbjct: 182 KIIPALQSRCTRFRFAPLDNFHVTERLRYVIEAERLDVTEGGLAALVRLCTGDMRKALNI 241
Query: 243 LQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVD 302
LQSTHMASQ ITEEAVYLCTGNP+PKDIEQIS+WLLNE F+DSFKRISE+K RKGLALVD
Sbjct: 242 LQSTHMASQHITEEAVYLCTGNPMPKDIEQISFWLLNEPFSDSFKRISEIKTRKGLALVD 301
Query: 303 IVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDKLQLGSIISTFTQARSAIVAA 362
IVREVT+FVFKI+MPS++RV+L+NDLADIEYR++FGCNDKLQLGS+IS+FT ARSA+V A
Sbjct: 302 IVREVTLFVFKIEMPSNIRVQLINDLADIEYRMTFGCNDKLQLGSLISSFTGARSALVGA 361
Query: 363 AK 364
A+
Sbjct: 362 AQ 363
>gi|356509405|ref|XP_003523440.1| PREDICTED: replication factor C subunit 5-like [Glycine max]
Length = 363
Score = 632 bits (1630), Expect = e-179, Method: Compositional matrix adjust.
Identities = 307/361 (85%), Positives = 327/361 (90%), Gaps = 1/361 (0%)
Query: 4 AETVSLMDFDEDENQNLKPKDNGKNVIVSGTPPDI-KASPWVEKYRPQSLADVAAHRDIV 62
AET MD D D++ D K+V+V+ P KA PWVEKYRP SL DVAAHRDIV
Sbjct: 2 AETNHHMDIDSDDHTYTARPDKAKSVVVASNPAAAGKAIPWVEKYRPLSLDDVAAHRDIV 61
Query: 63 DTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVR 122
DTIDRLT+ENRLPHLLLYGPPGTGKTSTILAVARKLYG+QY NMILELNASDDRGIDVVR
Sbjct: 62 DTIDRLTTENRLPHLLLYGPPGTGKTSTILAVARKLYGSQYQNMILELNASDDRGIDVVR 121
Query: 123 QQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVN 182
QQIQDFASTQS SFGVK+SVKLVLLDEADAMTKDAQFALRRVIEKYTK+TRFALICN VN
Sbjct: 122 QQIQDFASTQSLSFGVKSSVKLVLLDEADAMTKDAQFALRRVIEKYTKSTRFALICNHVN 181
Query: 183 KIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNI 242
KIIPALQSRCTRFRFAPL+ VHVTERLKHVI+AEGLDV + GLAALVRL NGDMRKALNI
Sbjct: 182 KIIPALQSRCTRFRFAPLDAVHVTERLKHVIKAEGLDVEDSGLAALVRLSNGDMRKALNI 241
Query: 243 LQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVD 302
LQSTHMASQQITEE VYLCTGNPLPKDIEQISYWLLNE FADSFKRI EMK RKGLALVD
Sbjct: 242 LQSTHMASQQITEETVYLCTGNPLPKDIEQISYWLLNEQFADSFKRIDEMKTRKGLALVD 301
Query: 303 IVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDKLQLGSIISTFTQARSAIVAA 362
IVREVT+FVFKIKMPS VRV+LMNDLADIEYRLSFGCNDKLQLGS+I++F++ARSA+VAA
Sbjct: 302 IVREVTLFVFKIKMPSAVRVQLMNDLADIEYRLSFGCNDKLQLGSVIASFSRARSALVAA 361
Query: 363 A 363
A
Sbjct: 362 A 362
>gi|357463515|ref|XP_003602039.1| Replication factor C subunit [Medicago truncatula]
gi|355491087|gb|AES72290.1| Replication factor C subunit [Medicago truncatula]
Length = 355
Score = 603 bits (1556), Expect = e-170, Method: Compositional matrix adjust.
Identities = 290/332 (87%), Positives = 308/332 (92%), Gaps = 1/332 (0%)
Query: 24 DNGKNVIVSGTPP-DIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGP 82
D GK VI +G P KAS WVEKYRPQSL DVAAHRDIVDTIDRLT+ENRLPHLLLYGP
Sbjct: 14 DKGKTVIAAGNPSFGGKASLWVEKYRPQSLDDVAAHRDIVDTIDRLTTENRLPHLLLYGP 73
Query: 83 PGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASV 142
PGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQS SFGVK SV
Sbjct: 74 PGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSLSFGVKPSV 133
Query: 143 KLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEP 202
KLVLLDEADAMTKDAQFALRRVIEKYTK+TRFALICN VNKIIPALQSRCTRFRFAPL+
Sbjct: 134 KLVLLDEADAMTKDAQFALRRVIEKYTKSTRFALICNHVNKIIPALQSRCTRFRFAPLDA 193
Query: 203 VHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCT 262
VHVTERLKHVI AE LDV + GL+ALVRL NGDMRKALNILQSTHMASQQITEEAVYLCT
Sbjct: 194 VHVTERLKHVINAERLDVQDSGLSALVRLSNGDMRKALNILQSTHMASQQITEEAVYLCT 253
Query: 263 GNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRV 322
GNPLPKDIEQISYWLLNE +++SFKRI +MK RKGLAL+DIVREVTMFVFKI MPS VRV
Sbjct: 254 GNPLPKDIEQISYWLLNEQYSESFKRIYDMKTRKGLALIDIVREVTMFVFKINMPSAVRV 313
Query: 323 RLMNDLADIEYRLSFGCNDKLQLGSIISTFTQ 354
+L+NDLADIEYRLSFGCNDKLQLGS++++FT+
Sbjct: 314 QLVNDLADIEYRLSFGCNDKLQLGSVVASFTR 345
>gi|297842523|ref|XP_002889143.1| hypothetical protein ARALYDRAFT_476911 [Arabidopsis lyrata subsp.
lyrata]
gi|297334984|gb|EFH65402.1| hypothetical protein ARALYDRAFT_476911 [Arabidopsis lyrata subsp.
lyrata]
Length = 369
Score = 600 bits (1546), Expect = e-169, Method: Compositional matrix adjust.
Identities = 296/368 (80%), Positives = 322/368 (87%), Gaps = 9/368 (2%)
Query: 5 ETVSLMDFDEDENQNLKPKDNGKNVIVSGTPPDIKASPWVEKYRPQSLADVAAHRDIVDT 64
E S MD D DE Q KP + GK+V G PP KA+PWVEKYRPQSL DVAAHRDI+DT
Sbjct: 3 EITSAMDIDVDEIQPRKPINKGKDVAGFGAPPQSKATPWVEKYRPQSLDDVAAHRDIIDT 62
Query: 65 IDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQ 124
IDRLT+EN+LPHLLLYGPPGTGKTSTILAVARKLYG +Y NMILELNASDDRGIDVVRQQ
Sbjct: 63 IDRLTNENKLPHLLLYGPPGTGKTSTILAVARKLYGPKYRNMILELNASDDRGIDVVRQQ 122
Query: 125 IQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKI 184
IQDFASTQSFS G K+SVKLVLLDEADAMTKDAQFALRRVIEKYTK+TRFALI N VNKI
Sbjct: 123 IQDFASTQSFSLG-KSSVKLVLLDEADAMTKDAQFALRRVIEKYTKSTRFALIGNHVNKI 181
Query: 185 IPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQ 244
IPALQSRCTRFRFAPL+P+HV++RLKHVIEAEGL V++ GLAALVRL NGDMRKALNILQ
Sbjct: 182 IPALQSRCTRFRFAPLDPLHVSQRLKHVIEAEGLGVSDCGLAALVRLSNGDMRKALNILQ 241
Query: 245 STHMASQQ--------ITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRK 296
STHMAS++ ITEE VYLCTGNPLPKDIEQIS+WLLN+ F + +K ISE+K RK
Sbjct: 242 STHMASKEITEKESKKITEEEVYLCTGNPLPKDIEQISHWLLNKPFDECYKNISEIKTRK 301
Query: 297 GLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDKLQLGSIISTFTQAR 356
GLA+VDIVREVTMFV KIKMPS V V+L+NDLADIEYRLSFGCNDKLQLG+IISTFT AR
Sbjct: 302 GLAIVDIVREVTMFVLKIKMPSHVSVQLINDLADIEYRLSFGCNDKLQLGAIISTFTHAR 361
Query: 357 SAIVAAAK 364
S IV AAK
Sbjct: 362 SIIVDAAK 369
>gi|115449001|ref|NP_001048280.1| Os02g0775200 [Oryza sativa Japonica Group]
gi|46805779|dbj|BAD17147.1| putative replication factor C 36kDa subunit [Oryza sativa Japonica
Group]
gi|46806135|dbj|BAD17365.1| putative replication factor C 36kDa subunit [Oryza sativa Japonica
Group]
gi|113537811|dbj|BAF10194.1| Os02g0775200 [Oryza sativa Japonica Group]
gi|215697717|dbj|BAG91711.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218191668|gb|EEC74095.1| hypothetical protein OsI_09136 [Oryza sativa Indica Group]
Length = 361
Score = 597 bits (1538), Expect = e-168, Method: Compositional matrix adjust.
Identities = 280/330 (84%), Positives = 310/330 (93%)
Query: 34 TPPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILA 93
+ P +A+PWVEKYRPQSL DVAAHRDIVDTIDRLT+ENRLPHLLLYGPPGTGKTSTILA
Sbjct: 31 STPGGRAAPWVEKYRPQSLGDVAAHRDIVDTIDRLTNENRLPHLLLYGPPGTGKTSTILA 90
Query: 94 VARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAM 153
VARKLYG+QY NMILELNASD+RGIDVVRQQIQDFAS +S SFG K SVK+VLLDEADAM
Sbjct: 91 VARKLYGSQYGNMILELNASDERGIDVVRQQIQDFASARSLSFGAKQSVKMVLLDEADAM 150
Query: 154 TKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVI 213
TKDAQFALRRVIEK+T++TRFALICN VNKIIPALQSRCTRFRFAPL+ HV ERLKH+I
Sbjct: 151 TKDAQFALRRVIEKHTRSTRFALICNHVNKIIPALQSRCTRFRFAPLDGTHVRERLKHII 210
Query: 214 EAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQI 273
++EGLDV +GGL ALVRL NGDMRKALNILQSTHMAS+QITEEAVYLCTGNP+PKDIEQI
Sbjct: 211 QSEGLDVDDGGLTALVRLSNGDMRKALNILQSTHMASKQITEEAVYLCTGNPMPKDIEQI 270
Query: 274 SYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEY 333
+YWLLNESF+ SFK IS+MKMRKGLALVDI+REVTMFVFKI+MPSDVR++L+NDLADIEY
Sbjct: 271 AYWLLNESFSTSFKCISDMKMRKGLALVDIIREVTMFVFKIQMPSDVRIKLINDLADIEY 330
Query: 334 RLSFGCNDKLQLGSIISTFTQARSAIVAAA 363
RLSF CNDKLQLG++ISTFT AR+A+VAAA
Sbjct: 331 RLSFACNDKLQLGALISTFTGARTAMVAAA 360
>gi|326489719|dbj|BAK01840.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326531584|dbj|BAJ97796.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 359
Score = 596 bits (1536), Expect = e-168, Method: Compositional matrix adjust.
Identities = 285/363 (78%), Positives = 319/363 (87%), Gaps = 5/363 (1%)
Query: 1 MAEAETVSLMDFDEDENQNLKPKDNGKNVIVSGTPPDIKASPWVEKYRPQSLADVAAHRD 60
MA A + MD D P GK + + +K+SPWVEKYRPQSLADVAAHRD
Sbjct: 1 MAGATAAAPMDID---GAAAPPAFKGKAPLSAAAA--VKSSPWVEKYRPQSLADVAAHRD 55
Query: 61 IVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDV 120
IVDTIDRLT ENRLPHLLLYGPPGTGKTSTILAVARK+YG+QY NMILELNASD+RGI V
Sbjct: 56 IVDTIDRLTDENRLPHLLLYGPPGTGKTSTILAVARKIYGSQYGNMILELNASDERGIGV 115
Query: 121 VRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQ 180
VRQQIQDFAS S SFG K +VKLVLLDEADAMTKDAQFALRRVIEKYT++TRFALICN
Sbjct: 116 VRQQIQDFASAHSLSFGAKPAVKLVLLDEADAMTKDAQFALRRVIEKYTRSTRFALICNH 175
Query: 181 VNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKAL 240
VNKIIPALQSRCTRFRFAPL+ HV+ERL+H+I++EGLDV EGGL+ALVRL NGDMRK+L
Sbjct: 176 VNKIIPALQSRCTRFRFAPLDGSHVSERLRHIIKSEGLDVDEGGLSALVRLSNGDMRKSL 235
Query: 241 NILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLAL 300
NILQSTHMASQQITEEAVYLCTGNP+PKDIEQI++WLLNE F+ SFK I++MKMRKGLAL
Sbjct: 236 NILQSTHMASQQITEEAVYLCTGNPMPKDIEQIAFWLLNEPFSTSFKHIADMKMRKGLAL 295
Query: 301 VDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDKLQLGSIISTFTQARSAIV 360
+DI+REVTMFVFKIKMPS VRV+L+NDLADIEYRL+F CNDKLQLG++ISTFT AR+A+V
Sbjct: 296 IDIIREVTMFVFKIKMPSSVRVKLINDLADIEYRLTFACNDKLQLGALISTFTTARTAMV 355
Query: 361 AAA 363
AAA
Sbjct: 356 AAA 358
>gi|357137885|ref|XP_003570529.1| PREDICTED: replication factor C subunit 5-like [Brachypodium
distachyon]
Length = 358
Score = 594 bits (1532), Expect = e-167, Method: Compositional matrix adjust.
Identities = 285/363 (78%), Positives = 319/363 (87%), Gaps = 6/363 (1%)
Query: 1 MAEAETVSLMDFDEDENQNLKPKDNGKNVIVSGTPPDIKASPWVEKYRPQSLADVAAHRD 60
MA A T + MD D P GK + + +++SPWVEKYRPQSLADVAAHRD
Sbjct: 1 MAGAATTAPMDIDAAA----PPHSKGKAPLSAAAA--VRSSPWVEKYRPQSLADVAAHRD 54
Query: 61 IVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDV 120
IVDTIDRLT ENRLPHLLLYGPPGTGKTSTILAVARK+YG+QY NMILELNASD+RGI V
Sbjct: 55 IVDTIDRLTDENRLPHLLLYGPPGTGKTSTILAVARKIYGSQYGNMILELNASDERGIGV 114
Query: 121 VRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQ 180
VRQQIQDFAS S SFG K +VKLVLLDEADAMTKDAQFALRRVIEKYT++TRFALICN
Sbjct: 115 VRQQIQDFASAHSLSFGAKPAVKLVLLDEADAMTKDAQFALRRVIEKYTRSTRFALICNH 174
Query: 181 VNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKAL 240
VNKIIPALQSRCTRFRFAPL+ HV+ERL+H+I++EGLDV EGGL ALVRL +GDMRKAL
Sbjct: 175 VNKIIPALQSRCTRFRFAPLDGSHVSERLQHIIKSEGLDVDEGGLTALVRLSSGDMRKAL 234
Query: 241 NILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLAL 300
NILQSTHMASQQITEEAVYLCTGNP+PKDIEQI++WLLNE F+ SFK IS+MKMRKGLAL
Sbjct: 235 NILQSTHMASQQITEEAVYLCTGNPMPKDIEQIAFWLLNEPFSTSFKYISDMKMRKGLAL 294
Query: 301 VDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDKLQLGSIISTFTQARSAIV 360
+DI+REVTMFVFKIKMP +VRV+L+NDLADIEYRL+F CNDKLQLG++ISTFT AR+A+V
Sbjct: 295 IDIIREVTMFVFKIKMPCNVRVKLINDLADIEYRLTFACNDKLQLGALISTFTSARTAMV 354
Query: 361 AAA 363
AAA
Sbjct: 355 AAA 357
>gi|15223967|ref|NP_177871.1| replication factor C subunit 3 [Arabidopsis thaliana]
gi|12323400|gb|AAG51681.1|AC010704_25 putative replication factor C; 24844-22715 [Arabidopsis thaliana]
gi|17529332|gb|AAL38893.1| putative replication factor C [Arabidopsis thaliana]
gi|21436375|gb|AAM51357.1| putative replication factor C [Arabidopsis thaliana]
gi|332197861|gb|AEE35982.1| replication factor C subunit 3 [Arabidopsis thaliana]
Length = 369
Score = 593 bits (1530), Expect = e-167, Method: Compositional matrix adjust.
Identities = 292/368 (79%), Positives = 323/368 (87%), Gaps = 9/368 (2%)
Query: 5 ETVSLMDFDEDENQNLKPKDNGKNVIVSGTPPDIKASPWVEKYRPQSLADVAAHRDIVDT 64
E S MD D DE Q KP + GK+V+ G PP KA+PWVEKYRPQSL DVAAHRDI+DT
Sbjct: 3 ELTSAMDIDVDEIQPRKPINKGKDVVGFGPPPQSKATPWVEKYRPQSLDDVAAHRDIIDT 62
Query: 65 IDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQ 124
IDRLT+EN+LPHLLLYGPPGTGKTSTILAVARKLYG +Y NMILELNASDDRGIDVVRQQ
Sbjct: 63 IDRLTNENKLPHLLLYGPPGTGKTSTILAVARKLYGPKYRNMILELNASDDRGIDVVRQQ 122
Query: 125 IQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKI 184
IQDFASTQSFS G K+SVKLVLLDEADAMTKDAQFALRRVIEKYTK+TRFALI N VNKI
Sbjct: 123 IQDFASTQSFSLG-KSSVKLVLLDEADAMTKDAQFALRRVIEKYTKSTRFALIGNHVNKI 181
Query: 185 IPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQ 244
IPALQSRCTRFRFAPL+ VH+++RLKHVIEAE L V++ GLAALVRL NGDMRKALNILQ
Sbjct: 182 IPALQSRCTRFRFAPLDGVHMSQRLKHVIEAERLVVSDCGLAALVRLSNGDMRKALNILQ 241
Query: 245 STHMA--------SQQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRK 296
STHMA S+QITEE VYLCTGNPLPKDIEQIS+WLLN+ F + +K +SE+K RK
Sbjct: 242 STHMASKEITEEESKQITEEDVYLCTGNPLPKDIEQISHWLLNKPFDECYKDVSEIKTRK 301
Query: 297 GLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDKLQLGSIISTFTQAR 356
GLA+VDIV+E+T+F+FKIKMPS VRV+L+NDLADIEYRLSFGCNDKLQLG+IISTFT AR
Sbjct: 302 GLAIVDIVKEITLFIFKIKMPSAVRVQLINDLADIEYRLSFGCNDKLQLGAIISTFTHAR 361
Query: 357 SAIVAAAK 364
S IV AAK
Sbjct: 362 SIIVGAAK 369
>gi|10798790|dbj|BAB16439.1| replication factor C 36kDa subunit [Oryza sativa Japonica Group]
Length = 367
Score = 591 bits (1523), Expect = e-166, Method: Compositional matrix adjust.
Identities = 280/336 (83%), Positives = 310/336 (92%), Gaps = 6/336 (1%)
Query: 34 TPPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILA 93
+ P +A+PWVEKYRPQSL DVAAHRDIVDTIDRLT+ENRLPHLLLYGPPGTGKTSTILA
Sbjct: 31 STPGGRAAPWVEKYRPQSLGDVAAHRDIVDTIDRLTNENRLPHLLLYGPPGTGKTSTILA 90
Query: 94 VARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAM 153
VARKLYG+QY NMILELNASD+RGIDVVRQQIQDFAS +S SFG K SVK+VLLDEADAM
Sbjct: 91 VARKLYGSQYGNMILELNASDERGIDVVRQQIQDFASARSLSFGAKQSVKMVLLDEADAM 150
Query: 154 TKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVI 213
TKDAQFALRRVIEK+T++TRFALICN VNKIIPALQSRCTRFRFAPL+ HV ERLKH+I
Sbjct: 151 TKDAQFALRRVIEKHTRSTRFALICNHVNKIIPALQSRCTRFRFAPLDGTHVRERLKHII 210
Query: 214 EAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQI 273
++EGLDV +GGL ALVRL NGDMRKALNILQSTHMAS+QITEEAVYLCTGNP+PKDIEQI
Sbjct: 211 QSEGLDVDDGGLTALVRLSNGDMRKALNILQSTHMASKQITEEAVYLCTGNPMPKDIEQI 270
Query: 274 SYWLLNESFADSFK------RISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMND 327
+YWLLNESF+ SFK IS+MKMRKGLALVDI+REVTMFVFKI+MPSDVR++L+ND
Sbjct: 271 AYWLLNESFSTSFKCILNYQSISDMKMRKGLALVDIIREVTMFVFKIQMPSDVRIKLIND 330
Query: 328 LADIEYRLSFGCNDKLQLGSIISTFTQARSAIVAAA 363
LADIEYRLSF CNDKLQLG++ISTFT AR+A+VAAA
Sbjct: 331 LADIEYRLSFACNDKLQLGALISTFTGARTAMVAAA 366
>gi|219363377|ref|NP_001136580.1| replication factor C subunit 3 [Zea mays]
gi|194696262|gb|ACF82215.1| unknown [Zea mays]
gi|413939151|gb|AFW73702.1| replication factor C subunit 3 [Zea mays]
Length = 362
Score = 590 bits (1521), Expect = e-166, Method: Compositional matrix adjust.
Identities = 277/325 (85%), Positives = 305/325 (93%)
Query: 39 KASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKL 98
+A+PWVEKYRPQSLADVAAHRDIVDTIDRLT+ENRLPHLLLYGPPGTGKTSTILAVARKL
Sbjct: 37 RAAPWVEKYRPQSLADVAAHRDIVDTIDRLTNENRLPHLLLYGPPGTGKTSTILAVARKL 96
Query: 99 YGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQ 158
YG+QY NMILELNASD+RGIDVVRQQIQDFA +S SFG + SVKLVLLDEADAMTKDAQ
Sbjct: 97 YGSQYSNMILELNASDERGIDVVRQQIQDFAGARSLSFGARPSVKLVLLDEADAMTKDAQ 156
Query: 159 FALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGL 218
FALRRVIEKYT++TRFALICN VNKIIPALQSRCTRFRFAPL+ HV ERL+H+I++EGL
Sbjct: 157 FALRRVIEKYTRSTRFALICNHVNKIIPALQSRCTRFRFAPLDGSHVRERLQHIIKSEGL 216
Query: 219 DVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLL 278
V +GGL ALVRL NGDMRKALNILQSTHMASQQITEEAVYLCTGNP+PKDIEQI++WLL
Sbjct: 217 SVDDGGLTALVRLSNGDMRKALNILQSTHMASQQITEEAVYLCTGNPMPKDIEQIAFWLL 276
Query: 279 NESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFG 338
NE F+ SFK IS+MKMRKGLALVDI+REVTMFVFKI+MPSDVRV+L+NDLADIEYRLSF
Sbjct: 277 NEPFSTSFKYISDMKMRKGLALVDIIREVTMFVFKIQMPSDVRVKLINDLADIEYRLSFA 336
Query: 339 CNDKLQLGSIISTFTQARSAIVAAA 363
CNDKLQLG++ISTFT R+A+VAAA
Sbjct: 337 CNDKLQLGALISTFTDTRTAMVAAA 361
>gi|195628076|gb|ACG35868.1| replication factor C subunit 3 [Zea mays]
Length = 362
Score = 588 bits (1516), Expect = e-165, Method: Compositional matrix adjust.
Identities = 276/325 (84%), Positives = 305/325 (93%)
Query: 39 KASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKL 98
+A+PWVEKYRPQSLADVAAHRDIVDTIDRLT+ENRLPHLLLYGPPGTGKTSTILAVARKL
Sbjct: 37 RAAPWVEKYRPQSLADVAAHRDIVDTIDRLTNENRLPHLLLYGPPGTGKTSTILAVARKL 96
Query: 99 YGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQ 158
YG+QY NMILELNASD+RGIDVVRQQIQDFA +S SFG + SVKLVLLDEADAMTKDAQ
Sbjct: 97 YGSQYSNMILELNASDERGIDVVRQQIQDFAGARSLSFGARPSVKLVLLDEADAMTKDAQ 156
Query: 159 FALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGL 218
FALRRVIEKYT++TRFALICN VNKIIPALQSRCTRFRFAPL+ HV ERL+H+I++EGL
Sbjct: 157 FALRRVIEKYTRSTRFALICNHVNKIIPALQSRCTRFRFAPLDGSHVRERLQHIIKSEGL 216
Query: 219 DVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLL 278
V +GGL ALVRL NGDMRKALNILQSTHMASQQITEEAVYLCTGNP+PKDIEQI++WLL
Sbjct: 217 SVDDGGLTALVRLSNGDMRKALNILQSTHMASQQITEEAVYLCTGNPMPKDIEQIAFWLL 276
Query: 279 NESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFG 338
NE F+ SFK IS+MKMRKGLALVDI+REVTMFVFKI+MPSDVRV+L+N+LADIEYRLSF
Sbjct: 277 NEPFSTSFKYISDMKMRKGLALVDIIREVTMFVFKIQMPSDVRVKLINNLADIEYRLSFA 336
Query: 339 CNDKLQLGSIISTFTQARSAIVAAA 363
CNDKLQLG++ISTFT R+A+VAAA
Sbjct: 337 CNDKLQLGALISTFTDTRTAMVAAA 361
>gi|242066704|ref|XP_002454641.1| hypothetical protein SORBIDRAFT_04g034710 [Sorghum bicolor]
gi|241934472|gb|EES07617.1| hypothetical protein SORBIDRAFT_04g034710 [Sorghum bicolor]
Length = 362
Score = 584 bits (1506), Expect = e-164, Method: Compositional matrix adjust.
Identities = 274/325 (84%), Positives = 303/325 (93%)
Query: 39 KASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKL 98
+A+PWVEKYRPQSLADVAAHRDIVDTIDRLT+ENRLPHLLLYGPPGTGKTSTILAVARKL
Sbjct: 37 RAAPWVEKYRPQSLADVAAHRDIVDTIDRLTNENRLPHLLLYGPPGTGKTSTILAVARKL 96
Query: 99 YGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQ 158
YG+QY NMILELNASD+RGIDVVRQQIQDFA +S SFG + SVKLVLLDEADAMTKDAQ
Sbjct: 97 YGSQYSNMILELNASDERGIDVVRQQIQDFAGARSLSFGARPSVKLVLLDEADAMTKDAQ 156
Query: 159 FALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGL 218
FALRRVIEKYT++TRFALICN VNKIIPALQSRCTRFRFAPL+ HV ERL+H+I++EGL
Sbjct: 157 FALRRVIEKYTRSTRFALICNHVNKIIPALQSRCTRFRFAPLDGSHVRERLQHIIKSEGL 216
Query: 219 DVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLL 278
V EGGL ALVRL NGDMRKALNILQSTHMASQQITEEAVYLCTGNP+P DIE+I++WLL
Sbjct: 217 SVDEGGLTALVRLSNGDMRKALNILQSTHMASQQITEEAVYLCTGNPMPNDIERIAFWLL 276
Query: 279 NESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFG 338
NE F+ SFK IS+MKMRKGLALVDI+REVTMFVFKI+MPSDVRV+L+N+LADIEYRLSF
Sbjct: 277 NEPFSTSFKHISDMKMRKGLALVDIIREVTMFVFKIEMPSDVRVKLINNLADIEYRLSFA 336
Query: 339 CNDKLQLGSIISTFTQARSAIVAAA 363
CNDKLQLG++IS FT R+A+VAAA
Sbjct: 337 CNDKLQLGALISAFTDTRTAMVAAA 361
>gi|168037225|ref|XP_001771105.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162677638|gb|EDQ64106.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 365
Score = 537 bits (1384), Expect = e-150, Method: Compositional matrix adjust.
Identities = 257/358 (71%), Positives = 299/358 (83%), Gaps = 11/358 (3%)
Query: 18 QNLKPKDNGKNVIVSGTPPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHL 77
++L GK + +K PWVEKYRP SLADVAAH+DI+DTIDRLT ENRLPHL
Sbjct: 8 RSLSASQKGKGKVDLNNGRQVKGGPWVEKYRPTSLADVAAHKDIIDTIDRLTGENRLPHL 67
Query: 78 LLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFG 137
LLYGPPGTGKTSTILAVARKLYGAQY NMILELNASDDRGI+VVRQQIQDFAST+S SFG
Sbjct: 68 LLYGPPGTGKTSTILAVARKLYGAQYQNMILELNASDDRGIEVVRQQIQDFASTKSISFG 127
Query: 138 VKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRF 197
K +VKLV+LDEADAMTKDAQFALRRVIEKYTK+TRF LICN +KIIPALQSRCTRFRF
Sbjct: 128 PKVNVKLVILDEADAMTKDAQFALRRVIEKYTKSTRFCLICNYASKIIPALQSRCTRFRF 187
Query: 198 APLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEA 257
APL+P +VTERL++VI+ EGLDVT+GGLAA+VRL NGD+RKALNILQS MAS +TEEA
Sbjct: 188 APLDPANVTERLRYVIQQEGLDVTDGGLAAIVRLANGDLRKALNILQSAQMASPHLTEEA 247
Query: 258 VYLCTGNPLPKDIEQISYWLLNESFADSFKR-----------ISEMKMRKGLALVDIVRE 306
VYLCTGNP+PKDIEQI+YWLLNE F+ SF+ I++MK KGLALVD+ RE
Sbjct: 248 VYLCTGNPMPKDIEQIAYWLLNEPFSTSFQSILNNLIKLFHDITKMKTSKGLALVDVARE 307
Query: 307 VTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDKLQLGSIISTFTQARSAIVAAAK 364
+ FVF I MP VRV+L++ LAD+EYRL+FG N+KLQLG+++ FT+AR+A+VAAA+
Sbjct: 308 LQPFVFTINMPPTVRVQLIDALADVEYRLAFGTNEKLQLGALLGAFTRARTALVAAAR 365
>gi|302813098|ref|XP_002988235.1| hypothetical protein SELMODRAFT_235493 [Selaginella moellendorffii]
gi|302819400|ref|XP_002991370.1| hypothetical protein SELMODRAFT_236274 [Selaginella moellendorffii]
gi|300140763|gb|EFJ07482.1| hypothetical protein SELMODRAFT_236274 [Selaginella moellendorffii]
gi|300143967|gb|EFJ10654.1| hypothetical protein SELMODRAFT_235493 [Selaginella moellendorffii]
Length = 332
Score = 514 bits (1324), Expect = e-143, Method: Compositional matrix adjust.
Identities = 242/326 (74%), Positives = 281/326 (86%)
Query: 39 KASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKL 98
++ PWVEKYRP SLADVAAH+DI+DTIDRLT+EN+LPHLLLYGPPGTGKTSTILAVARKL
Sbjct: 7 RSGPWVEKYRPASLADVAAHKDIIDTIDRLTAENKLPHLLLYGPPGTGKTSTILAVARKL 66
Query: 99 YGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQ 158
YG Q+ NMILELNASDDRGIDVVRQQIQDFASTQS SFG KA+VKL++LDEADAMTKDAQ
Sbjct: 67 YGPQFQNMILELNASDDRGIDVVRQQIQDFASTQSISFGEKANVKLIILDEADAMTKDAQ 126
Query: 159 FALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGL 218
F+LRR+IEKYTKNTRF LICN V+KIIPALQSRCTRFRF PL+ HV ERL+ VI+ E L
Sbjct: 127 FSLRRIIEKYTKNTRFCLICNYVSKIIPALQSRCTRFRFPPLQAQHVRERLEFVIDQERL 186
Query: 219 DVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLL 278
DVTE GL+A+VRL NGDMRKALNILQST MA +TE AVY CTGNP PK+IEQI+ WLL
Sbjct: 187 DVTEDGLSAIVRLSNGDMRKALNILQSTQMAEPHVTEAAVYSCTGNPTPKEIEQIASWLL 246
Query: 279 NESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFG 338
NESF ++ I ++K KGLALVD+VRE+ F+F I MP ++RV L+N LADIEYRL+ G
Sbjct: 247 NESFQSAYSNIVQLKTSKGLALVDVVRELQPFIFTISMPGNIRVPLINCLADIEYRLASG 306
Query: 339 CNDKLQLGSIISTFTQARSAIVAAAK 364
N+KLQLG+++S FT R A+V+AA+
Sbjct: 307 PNEKLQLGALVSAFTHTRVALVSAAR 332
>gi|222623763|gb|EEE57895.1| hypothetical protein OsJ_08571 [Oryza sativa Japonica Group]
Length = 391
Score = 478 bits (1229), Expect = e-132, Method: Compositional matrix adjust.
Identities = 246/384 (64%), Positives = 274/384 (71%), Gaps = 82/384 (21%)
Query: 36 PDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVA 95
P +A+PWVEKYRPQSL DVAAHRDIVDTIDRLT+ENRLPHLLLYGPPGTGK
Sbjct: 33 PGGRAAPWVEKYRPQSLGDVAAHRDIVDTIDRLTNENRLPHLLLYGPPGTGK-------- 84
Query: 96 RKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTK 155
H L S +RGIDVVRQQIQDFAS +S SFG K SVK+VLLDEADAMTK
Sbjct: 85 --------HRQYWPLQGSYERGIDVVRQQIQDFASARSLSFGAKQSVKMVLLDEADAMTK 136
Query: 156 DAQFA----------------------------------------------LRR------ 163
DAQFA LRR
Sbjct: 137 DAQFALRRATSSNLPHLTVIEKHTRSTRAKQSVKMVLLDEADAMTKDAQFALRRATSSNL 196
Query: 164 ----VIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLD 219
VIEK+T++TRFALICN VNKIIPALQSRCTRFRFAPL+ HV ERLKH+I++EGLD
Sbjct: 197 PHLTVIEKHTRSTRFALICNHVNKIIPALQSRCTRFRFAPLDGTHVRERLKHIIQSEGLD 256
Query: 220 VTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLN 279
V +GGL ALVRL NGDMRKALNILQ +VYLCTGNP+PKDIEQI+YWLLN
Sbjct: 257 VDDGGLTALVRLSNGDMRKALNILQVM----------SVYLCTGNPMPKDIEQIAYWLLN 306
Query: 280 ESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGC 339
ESF+ SFK IS+MKMRKGLALVDI+REVTMFVFKI+MPSDVR++L+NDLADIEYRLSF C
Sbjct: 307 ESFSTSFKCISDMKMRKGLALVDIIREVTMFVFKIQMPSDVRIKLINDLADIEYRLSFAC 366
Query: 340 NDKLQLGSIISTFTQARSAIVAAA 363
NDKLQLG++ISTFT AR+A+VAAA
Sbjct: 367 NDKLQLGALISTFTGARTAMVAAA 390
>gi|384248832|gb|EIE22315.1| DNA replication factor C complex subunit 5 [Coccomyxa
subellipsoidea C-169]
Length = 334
Score = 431 bits (1108), Expect = e-118, Method: Compositional matrix adjust.
Identities = 205/330 (62%), Positives = 263/330 (79%), Gaps = 3/330 (0%)
Query: 35 PPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAV 94
P I +PWVEKYRP++L DVAAH++I+DTI RL E+R PH+L YGPPGTGKTSTILAV
Sbjct: 8 PSIIDDAPWVEKYRPKTLDDVAAHKEIIDTIKRLVKEDRFPHVLFYGPPGTGKTSTILAV 67
Query: 95 ARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMT 154
AR++YGA +M+LELNASDDRGI +VR+QI DFAST++ F K KLV+LDE DAMT
Sbjct: 68 ARQMYGASLRSMVLELNASDDRGIGIVREQIVDFASTKTM-FSNK--FKLVILDECDAMT 124
Query: 155 KDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIE 214
KDAQ ALRRVIEKYT+NTRF LICN VNKIIPALQSRCTRFRF PL +V RL+ VI+
Sbjct: 125 KDAQAALRRVIEKYTRNTRFCLICNYVNKIIPALQSRCTRFRFPPLADSYVRSRLQFVID 184
Query: 215 AEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQIS 274
+E +++ +GGL A+V L GDMR+ LNILQ+THM++ ++EEAVY CTGNPLPKDIE I
Sbjct: 185 SERVNMGDGGLDAVVTLGAGDMRRTLNILQATHMSADVVSEEAVYQCTGNPLPKDIEAIV 244
Query: 275 YWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYR 334
L NE F D F ++ +M++ KGLAL DIV+++ +VF++ MP+ VR++L++ LAD E+R
Sbjct: 245 QALFNEDFVDVFAKVQDMQINKGLALTDIVQQLHPWVFRVNMPASVRIKLVDALADTEHR 304
Query: 335 LSFGCNDKLQLGSIISTFTQARSAIVAAAK 364
L+FG +++LQLG+++ F+ AR IVAAAK
Sbjct: 305 LAFGTSERLQLGALVGAFSVAREGIVAAAK 334
>gi|302843932|ref|XP_002953507.1| DNA replication factor C complex subunit 5 [Volvox carteri f.
nagariensis]
gi|300261266|gb|EFJ45480.1| DNA replication factor C complex subunit 5 [Volvox carteri f.
nagariensis]
Length = 356
Score = 425 bits (1093), Expect = e-116, Method: Compositional matrix adjust.
Identities = 199/328 (60%), Positives = 260/328 (79%), Gaps = 3/328 (0%)
Query: 37 DIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVAR 96
D + +PWVEKYRP+SL +VAAH+ I+DTI RLT+ENRLPHLLLYGPPGTGKTSTILAVAR
Sbjct: 32 DGRNAPWVEKYRPKSLDEVAAHKQIIDTIKRLTNENRLPHLLLYGPPGTGKTSTILAVAR 91
Query: 97 KLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKD 156
++YG+ NM LELNASD+RGI VVRQ+IQDFAST++ F K KL++LDE DAMT D
Sbjct: 92 QIYGSSMANMTLELNASDERGISVVRQEIQDFASTRTI-FSNK--FKLIILDECDAMTND 148
Query: 157 AQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAE 216
AQFALRRVIEKYT+N RF LICN V+K+IPALQSRCT+FRFAPL+P V ERL++V E
Sbjct: 149 AQFALRRVIEKYTRNARFCLICNYVSKVIPALQSRCTKFRFAPLDPQFVHERLQYVASTE 208
Query: 217 GLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYW 276
+++ G L A+V L NGDMR++LNILQS H+A + ++AVYLCTGNPLP DI Q+ W
Sbjct: 209 RVNLGSGALDAVVELGNGDMRRSLNILQSCHLAFDVVDQQAVYLCTGNPLPADISQVLTW 268
Query: 277 LLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLS 336
LLNE AD F++++++++ +G+ALVD+VRE+ ++ K MP ++ L+ +AD+E+RL+
Sbjct: 269 LLNEPVADVFEKVTQLQVDRGVALVDVVRELHPWIMKTSMPVHAKIALVERMADVEHRLA 328
Query: 337 FGCNDKLQLGSIISTFTQARSAIVAAAK 364
+ ++KLQLG +I+ F +AR I AAK
Sbjct: 329 YSTSEKLQLGGLIAAFVKAREVIAKAAK 356
>gi|159477557|ref|XP_001696875.1| DNA replication factor C complex subunit 5 [Chlamydomonas
reinhardtii]
gi|158274787|gb|EDP00567.1| DNA replication factor C complex subunit 5 [Chlamydomonas
reinhardtii]
Length = 356
Score = 419 bits (1078), Expect = e-115, Method: Compositional matrix adjust.
Identities = 203/328 (61%), Positives = 257/328 (78%), Gaps = 3/328 (0%)
Query: 37 DIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVAR 96
D + +PWVEKYRP+ L DVAAH++I+DTI RLT ENRLPHLLLYGPPGTGKTSTILAVAR
Sbjct: 32 DGRDAPWVEKYRPKKLDDVAAHKEIIDTIKRLTVENRLPHLLLYGPPGTGKTSTILAVAR 91
Query: 97 KLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKD 156
++YG NM LELN+SD+RGI VVRQ+IQDFAST+S F K KL++LDE DAMT+D
Sbjct: 92 QIYGNSLANMTLELNSSDERGIGVVRQEIQDFASTRSV-FSNK--FKLIILDECDAMTQD 148
Query: 157 AQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAE 216
AQ ALRRVIEKYT+N RF LICN V+KIIPALQSRCT+FRFAPL P V ERL++V + E
Sbjct: 149 AQAALRRVIEKYTRNARFCLICNYVSKIIPALQSRCTKFRFAPLSPQFVRERLQYVADIE 208
Query: 217 GLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYW 276
+ + GGL A+V+L +GDMR++LNILQS HMA + + AVY CTGNPLP DIE++ W
Sbjct: 209 KMKLGPGGLDAVVQLGSGDMRRSLNILQSCHMAFDTVDQSAVYTCTGNPLPADIERVLTW 268
Query: 277 LLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLS 336
LLN+ A+ F I ++++ KG+ALVDIVRE+ FV + +P +V L+ LAD+E+RL+
Sbjct: 269 LLNDRVAEVFANILKLQVDKGIALVDIVRELHPFVMALSIPVPAKVALVERLADVEHRLA 328
Query: 337 FGCNDKLQLGSIISTFTQARSAIVAAAK 364
F ++KLQLG++++ F +AR I AAAK
Sbjct: 329 FSTSEKLQLGALVAAFVRARETIAAAAK 356
>gi|320163538|gb|EFW40437.1| replication factor C 5 [Capsaspora owczarzaki ATCC 30864]
Length = 348
Score = 412 bits (1059), Expect = e-112, Method: Compositional matrix adjust.
Identities = 197/326 (60%), Positives = 247/326 (75%), Gaps = 2/326 (0%)
Query: 31 VSGTPPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTST 90
V G K PWVEKYRP SL ++ +H+DI+ TIDR +E+R+PHLL YGPPGTGKTST
Sbjct: 19 VRGAASTNKNLPWVEKYRPSSLDELISHKDIISTIDRFITEDRVPHLLFYGPPGTGKTST 78
Query: 91 ILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEA 150
ILA A+K+YG + +M+LELNASDDRGI VVR+QI++FAST++ + KLV+LDEA
Sbjct: 79 ILACAKKMYGNRMQSMVLELNASDDRGIGVVREQIKEFASTRTIT--SSGGTKLVILDEA 136
Query: 151 DAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLK 210
DAMT DAQ ALRRVIEKYT+NTRF LICN V+KI PA+QSRCTRFRFAPL + +RL
Sbjct: 137 DAMTSDAQAALRRVIEKYTRNTRFCLICNYVSKITPAIQSRCTRFRFAPLSSEQMLDRLN 196
Query: 211 HVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDI 270
VIE+E ++VT+ G AAL+RL GDMRK LNILQST MA + E +VY CTG PLP DI
Sbjct: 197 FVIESERVNVTDDGKAALMRLAQGDMRKVLNILQSTAMAFDTVDETSVYTCTGFPLPADI 256
Query: 271 EQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLAD 330
E I WLLNE F + I E+K++KGLAL DI+REV F+ +I+ P++VR+ L+ LAD
Sbjct: 257 ETIVQWLLNEPFTSAMANIGELKLQKGLALQDILREVHEFMARIEFPANVRIYLLKQLAD 316
Query: 331 IEYRLSFGCNDKLQLGSIISTFTQAR 356
IEYRLS G N+++QLGS+++ F R
Sbjct: 317 IEYRLSAGTNERIQLGSLVAVFNTGR 342
>gi|296213044|ref|XP_002753107.1| PREDICTED: replication factor C subunit 5 [Callithrix jacchus]
gi|403281561|ref|XP_003932252.1| PREDICTED: replication factor C subunit 5 [Saimiri boliviensis
boliviensis]
Length = 340
Score = 409 bits (1050), Expect = e-111, Method: Compositional matrix adjust.
Identities = 196/327 (59%), Positives = 251/327 (76%), Gaps = 4/327 (1%)
Query: 38 IKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARK 97
I+ PWVEKYRPQ+L D+ +H+DI+ TI + SE+RLPHLLLYGPPGTGKTSTILA A++
Sbjct: 17 IRNLPWVEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQ 76
Query: 98 LY-GAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKD 156
LY ++ +M+LELNASDDRGID+VR I FAST++ K KLV+LDEADAMT+D
Sbjct: 77 LYKDKEFGSMVLELNASDDRGIDIVRGPILSFASTRTI---FKKGFKLVILDEADAMTQD 133
Query: 157 AQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAE 216
AQ ALRRVIEK+T+NTRF LICN ++KIIPALQSRCTRFRF PL P + RL+HV+E E
Sbjct: 134 AQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEE 193
Query: 217 GLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYW 276
+D++E G+ ALV L +GDMR+ALNILQST+MA ++TEE VY CTG+PL DI I W
Sbjct: 194 KVDISEDGMKALVTLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKSDIANILDW 253
Query: 277 LLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLS 336
+LN+ F +++ I+E+K KGLAL DI+ E+ +FV ++ PS VR+ L+ +ADIEYRLS
Sbjct: 254 MLNQDFTTAYRNITELKTLKGLALHDILTEIHLFVHRVDFPSSVRIHLLTKMADIEYRLS 313
Query: 337 FGCNDKLQLGSIISTFTQARSAIVAAA 363
G N+K+QL S+I+ F R IVA A
Sbjct: 314 VGTNEKIQLSSLIAAFQVTRDLIVAEA 340
>gi|387849459|ref|NP_001248591.1| replication factor C subunit 5 [Macaca mulatta]
gi|402887809|ref|XP_003907273.1| PREDICTED: replication factor C subunit 5 [Papio anubis]
gi|355564724|gb|EHH21224.1| hypothetical protein EGK_04238 [Macaca mulatta]
gi|355759033|gb|EHH61566.1| hypothetical protein EGM_19495 [Macaca fascicularis]
gi|380786591|gb|AFE65171.1| replication factor C subunit 5 isoform 1 [Macaca mulatta]
gi|383414287|gb|AFH30357.1| replication factor C subunit 5 isoform 1 [Macaca mulatta]
Length = 340
Score = 408 bits (1049), Expect = e-111, Method: Compositional matrix adjust.
Identities = 196/327 (59%), Positives = 251/327 (76%), Gaps = 4/327 (1%)
Query: 38 IKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARK 97
I+ PWVEKYRPQ+L D+ +H+DI+ TI + SE+RLPHLLLYGPPGTGKTSTILA A++
Sbjct: 17 IRNLPWVEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQ 76
Query: 98 LY-GAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKD 156
LY ++ +M+LELNASDDRGID+VR I FAST++ K KLV+LDEADAMT+D
Sbjct: 77 LYKDKEFGSMVLELNASDDRGIDIVRGPILSFASTRTI---FKKGFKLVILDEADAMTQD 133
Query: 157 AQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAE 216
AQ ALRRVIEK+T+NTRF LICN ++KIIPALQSRCTRFRF PL P + RL+HV+E E
Sbjct: 134 AQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEE 193
Query: 217 GLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYW 276
+D++E G+ ALV L +GDMR+ALNILQST+MA ++TEE VY CTG+PL DI I W
Sbjct: 194 KVDISEDGMKALVTLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKSDIANILDW 253
Query: 277 LLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLS 336
+LN+ F +++ I+E+K KGLAL DI+ E+ +FV ++ PS VR+ L+ +ADIEYRLS
Sbjct: 254 MLNQDFTTAYRNITELKTLKGLALHDILTEIHLFVHRVDFPSSVRIHLLTKMADIEYRLS 313
Query: 337 FGCNDKLQLGSIISTFTQARSAIVAAA 363
G N+K+QL S+I+ F R IVA A
Sbjct: 314 VGTNEKIQLSSLIAAFQVTRDLIVAEA 340
>gi|332250708|ref|XP_003274494.1| PREDICTED: replication factor C subunit 5 isoform 1 [Nomascus
leucogenys]
gi|426374300|ref|XP_004054014.1| PREDICTED: replication factor C subunit 5 [Gorilla gorilla gorilla]
Length = 340
Score = 408 bits (1049), Expect = e-111, Method: Compositional matrix adjust.
Identities = 196/327 (59%), Positives = 251/327 (76%), Gaps = 4/327 (1%)
Query: 38 IKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARK 97
I+ PWVEKYRPQ+L D+ +H+DI+ TI + SE+RLPHLLLYGPPGTGKTSTILA A++
Sbjct: 17 IRNLPWVEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQ 76
Query: 98 LY-GAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKD 156
LY ++ +M+LELNASDDRGID+VR I FAST++ K KLV+LDEADAMT+D
Sbjct: 77 LYKDKEFGSMVLELNASDDRGIDIVRGPILSFASTRTI---FKKGFKLVILDEADAMTQD 133
Query: 157 AQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAE 216
AQ ALRRVIEK+T+NTRF LICN ++KIIPALQSRCTRFRF PL P + RL+HV+E E
Sbjct: 134 AQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEE 193
Query: 217 GLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYW 276
+D++E G+ ALV L +GDMR+ALNILQST+MA ++TEE VY CTG+PL DI I W
Sbjct: 194 KVDISEDGMKALVTLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKSDIANILDW 253
Query: 277 LLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLS 336
+LN+ F +++ I+E+K KGLAL DI+ E+ +FV ++ PS VR+ L+ +ADIEYRLS
Sbjct: 254 MLNQDFTTAYRNITELKTLKGLALHDILTEIHLFVHRVDFPSSVRIHLLTKMADIEYRLS 313
Query: 337 FGCNDKLQLGSIISTFTQARSAIVAAA 363
G N+K+QL S+I+ F R IVA A
Sbjct: 314 VGTNEKIQLSSLIAAFQVTRDLIVAEA 340
>gi|158254806|dbj|BAF83374.1| unnamed protein product [Homo sapiens]
Length = 340
Score = 408 bits (1048), Expect = e-111, Method: Compositional matrix adjust.
Identities = 195/327 (59%), Positives = 252/327 (77%), Gaps = 4/327 (1%)
Query: 38 IKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARK 97
I+ PWVEKYRPQ+L D+ +H+DI+ TI + +E+RLPHLLLYGPPGTGKTSTILA A++
Sbjct: 17 IRNLPWVEKYRPQTLNDLISHQDILSTIQKFINEDRLPHLLLYGPPGTGKTSTILACAKQ 76
Query: 98 LY-GAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKD 156
LY ++ +M+LELNASDDRGID++R I FAST++ K KLV+LDEADAMT+D
Sbjct: 77 LYKDKEFGSMVLELNASDDRGIDIIRGPILSFASTRTI---FKKGFKLVILDEADAMTQD 133
Query: 157 AQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAE 216
AQ ALRRVIEK+T+NTRF LICN ++KIIPALQSRCTRFRF PL P + RL+HV+E E
Sbjct: 134 AQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEE 193
Query: 217 GLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYW 276
+D++E G+ ALV L +GDMR+ALNILQST+MA ++TEE VY CTG+PL DI I W
Sbjct: 194 KVDISEDGMKALVTLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKSDIANILDW 253
Query: 277 LLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLS 336
+LN+ FA +++ I+E+K KGLAL DI+ E+ +FV ++ PS VR+ L+ +ADIEYRLS
Sbjct: 254 MLNQDFATAYRNITELKTLKGLALHDILTEIHLFVHRVDFPSSVRIHLLTKMADIEYRLS 313
Query: 337 FGCNDKLQLGSIISTFTQARSAIVAAA 363
G N+K+QL S+I+ F R IVA A
Sbjct: 314 VGTNEKIQLSSLIAAFQVTRDLIVAEA 340
>gi|410976710|ref|XP_003994756.1| PREDICTED: replication factor C subunit 5 [Felis catus]
Length = 340
Score = 407 bits (1047), Expect = e-111, Method: Compositional matrix adjust.
Identities = 196/327 (59%), Positives = 250/327 (76%), Gaps = 4/327 (1%)
Query: 38 IKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARK 97
I+ PWVEKYRPQ+L D+ +H+DI+ TI + SE+RLPHLLLYGPPGTGKTSTILA A++
Sbjct: 17 IRNLPWVEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQ 76
Query: 98 LY-GAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKD 156
LY ++ +M+LELNASDDRGID+VR I FAST++ K KLV+LDEADAMT+D
Sbjct: 77 LYKDKEFGSMVLELNASDDRGIDIVRGPILSFASTRTI---FKKGFKLVILDEADAMTQD 133
Query: 157 AQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAE 216
AQ ALRRVIEK+T+NTRF LICN ++KIIPALQSRCTRFRF PL P + RL+HV+E E
Sbjct: 134 AQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEE 193
Query: 217 GLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYW 276
+D++E G+ ALV L +GDMR+ALNILQST+MA ++TEE VY CTG+PL DI I W
Sbjct: 194 KVDISEDGMKALVTLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKSDIANILDW 253
Query: 277 LLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLS 336
+LN+ F +++ I+E+K KGLAL DI+ E+ +FV ++ PS VRV L+ +ADIEYRLS
Sbjct: 254 MLNQDFTTAYRNITELKTLKGLALQDILTEIHLFVHRVDFPSSVRVHLLTKMADIEYRLS 313
Query: 337 FGCNDKLQLGSIISTFTQARSAIVAAA 363
G N+K+QL S+I+ F R IV A
Sbjct: 314 VGTNEKIQLSSLIAAFQVTRDLIVTEA 340
>gi|397524983|ref|XP_003832459.1| PREDICTED: replication factor C subunit 5 [Pan paniscus]
Length = 340
Score = 407 bits (1045), Expect = e-111, Method: Compositional matrix adjust.
Identities = 195/327 (59%), Positives = 251/327 (76%), Gaps = 4/327 (1%)
Query: 38 IKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARK 97
I+ PWVEKYRPQ+L D+ +H+DI+ TI + +E+RLPHLLLYGPPGTGKTSTILA A++
Sbjct: 17 IRNLPWVEKYRPQTLNDLISHQDILSTIQKFINEDRLPHLLLYGPPGTGKTSTILACAKQ 76
Query: 98 LY-GAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKD 156
LY ++ +M+LELNASDDRGID+VR I FAST++ K KLV+LDEADAMT+D
Sbjct: 77 LYKDKEFGSMVLELNASDDRGIDIVRGPILSFASTRTI---FKKGFKLVILDEADAMTQD 133
Query: 157 AQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAE 216
AQ ALRRVIEK+T+NTRF LICN ++KIIPALQSRCTRFRF PL P + RL+HV+E E
Sbjct: 134 AQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEE 193
Query: 217 GLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYW 276
+D++E G+ ALV L +GDMR+ALNILQST+MA ++TEE VY CTG+PL DI I W
Sbjct: 194 KVDISEDGMKALVTLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKSDIANILDW 253
Query: 277 LLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLS 336
+LN+ F +++ I+E+K KGLAL DI+ E+ +FV ++ PS VR+ L+ +ADIEYRLS
Sbjct: 254 MLNQDFTTAYRNITELKTLKGLALHDILTEIHLFVHRVDFPSSVRIHLLTKMADIEYRLS 313
Query: 337 FGCNDKLQLGSIISTFTQARSAIVAAA 363
G N+K+QL S+I+ F R IVA A
Sbjct: 314 VGTNEKIQLSSLIAAFQVTRDLIVAEA 340
>gi|74211816|dbj|BAE29258.1| unnamed protein product [Mus musculus]
Length = 339
Score = 407 bits (1045), Expect = e-111, Method: Compositional matrix adjust.
Identities = 196/323 (60%), Positives = 249/323 (77%), Gaps = 4/323 (1%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLY-G 100
PWVEKYRPQ+LAD+ +H+DI+ TI + SE+RLPHLLLYGPPGTGKTSTILA A++LY
Sbjct: 20 PWVEKYRPQTLADLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKD 79
Query: 101 AQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFA 160
++ +M+LELNASDDRGID+VR I FAST++ K KLV+LDEADAMT+DAQ A
Sbjct: 80 KEFGSMVLELNASDDRGIDIVRGPILSFASTRTI---FKKGFKLVILDEADAMTQDAQNA 136
Query: 161 LRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDV 220
LRRVIEK+T+NTRF LICN ++KIIPALQSRCTRFRF PL P + RL+HV++ E +D+
Sbjct: 137 LRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVQEENVDI 196
Query: 221 TEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNE 280
+E G+ ALV L +GDMR+ALNILQST+MA ++TEE VY CTG+PL DI I W+LN+
Sbjct: 197 SEDGMKALVTLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKTDIANILDWMLNQ 256
Query: 281 SFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCN 340
F ++K I E+K KGLAL DI+ EV +FV ++ PS VR+ L+ +ADIEYRLS G +
Sbjct: 257 DFTTAYKSIMELKTLKGLALHDILTEVHLFVHRVDFPSSVRIHLLTKMADIEYRLSVGTS 316
Query: 341 DKLQLGSIISTFTQARSAIVAAA 363
+K+QL S+I+ F R IVA A
Sbjct: 317 EKIQLSSLIAAFQVTRDLIVAEA 339
>gi|110625924|ref|NP_082404.1| replication factor C subunit 5 [Mus musculus]
gi|30913281|sp|Q9D0F6.1|RFC5_MOUSE RecName: Full=Replication factor C subunit 5; AltName:
Full=Activator 1 36 kDa subunit; Short=A1 36 kDa
subunit; AltName: Full=Activator 1 subunit 5; AltName:
Full=Replication factor C 36 kDa subunit; Short=RF-C 36
kDa subunit; Short=RFC36
gi|12847646|dbj|BAB27652.1| unnamed protein product [Mus musculus]
gi|57242935|gb|AAH89001.1| Replication factor C (activator 1) 5 [Mus musculus]
gi|74206797|dbj|BAE41638.1| unnamed protein product [Mus musculus]
gi|148687857|gb|EDL19804.1| mCG8761 [Mus musculus]
Length = 339
Score = 407 bits (1045), Expect = e-111, Method: Compositional matrix adjust.
Identities = 196/323 (60%), Positives = 249/323 (77%), Gaps = 4/323 (1%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLY-G 100
PWVEKYRPQ+LAD+ +H+DI+ TI + SE+RLPHLLLYGPPGTGKTSTILA A++LY
Sbjct: 20 PWVEKYRPQTLADLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKD 79
Query: 101 AQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFA 160
++ +M+LELNASDDRGID+VR I FAST++ K KLV+LDEADAMT+DAQ A
Sbjct: 80 KEFGSMVLELNASDDRGIDIVRGPILSFASTRTI---FKKGFKLVILDEADAMTQDAQNA 136
Query: 161 LRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDV 220
LRRVIEK+T+NTRF LICN ++KIIPALQSRCTRFRF PL P + RL+HV++ E +D+
Sbjct: 137 LRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVQEENVDI 196
Query: 221 TEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNE 280
+E G+ ALV L +GDMR+ALNILQST+MA ++TEE VY CTG+PL DI I W+LN+
Sbjct: 197 SEDGMKALVTLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKTDIANILDWMLNQ 256
Query: 281 SFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCN 340
F ++K I E+K KGLAL DI+ EV +FV ++ PS VR+ L+ +ADIEYRLS G +
Sbjct: 257 DFTTAYKNIMELKTLKGLALHDILTEVHLFVHRVDFPSSVRIHLLTKMADIEYRLSVGTS 316
Query: 341 DKLQLGSIISTFTQARSAIVAAA 363
+K+QL S+I+ F R IVA A
Sbjct: 317 EKIQLSSLIAAFQVTRDLIVAEA 339
>gi|6677723|ref|NP_031396.1| replication factor C subunit 5 isoform 1 [Homo sapiens]
gi|728777|sp|P40937.1|RFC5_HUMAN RecName: Full=Replication factor C subunit 5; AltName:
Full=Activator 1 36 kDa subunit; Short=A1 36 kDa
subunit; AltName: Full=Activator 1 subunit 5; AltName:
Full=Replication factor C 36 kDa subunit; Short=RF-C 36
kDa subunit; Short=RFC36
gi|1498257|gb|AAB09784.1| replication factor C, 36-kDa subunit [Homo sapiens]
gi|12804841|gb|AAH01866.1| Replication factor C (activator 1) 5, 36.5kDa [Homo sapiens]
gi|15530326|gb|AAH13961.1| Replication factor C (activator 1) 5, 36.5kDa [Homo sapiens]
gi|29124997|gb|AAO63493.1| replication factor C (activator 1) 5, 36.5kDa [Homo sapiens]
gi|312151544|gb|ADQ32284.1| replication factor C (activator 1) 5, 36.5kDa [synthetic construct]
Length = 340
Score = 406 bits (1044), Expect = e-111, Method: Compositional matrix adjust.
Identities = 194/327 (59%), Positives = 251/327 (76%), Gaps = 4/327 (1%)
Query: 38 IKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARK 97
I+ PWVEKYRPQ+L D+ +H+DI+ TI + +E+RLPHLLLYGPPGTGKTSTILA A++
Sbjct: 17 IRNLPWVEKYRPQTLNDLISHQDILSTIQKFINEDRLPHLLLYGPPGTGKTSTILACAKQ 76
Query: 98 LY-GAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKD 156
LY ++ +M+LELNASDDRGID++R I FAST++ K KLV+LDEADAMT+D
Sbjct: 77 LYKDKEFGSMVLELNASDDRGIDIIRGPILSFASTRTI---FKKGFKLVILDEADAMTQD 133
Query: 157 AQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAE 216
AQ ALRRVIEK+T+NTRF LICN ++KIIPALQSRCTRFRF PL P + RL+HV+E E
Sbjct: 134 AQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEE 193
Query: 217 GLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYW 276
+D++E G+ ALV L +GDMR+ALNILQST+MA ++TEE VY CTG+PL DI I W
Sbjct: 194 KVDISEDGMKALVTLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKSDIANILDW 253
Query: 277 LLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLS 336
+LN+ F +++ I+E+K KGLAL DI+ E+ +FV ++ PS VR+ L+ +ADIEYRLS
Sbjct: 254 MLNQDFTTAYRNITELKTLKGLALHDILTEIHLFVHRVDFPSSVRIHLLTKMADIEYRLS 313
Query: 337 FGCNDKLQLGSIISTFTQARSAIVAAA 363
G N+K+QL S+I+ F R IVA A
Sbjct: 314 VGTNEKIQLSSLIAAFQVTRDLIVAEA 340
>gi|410210156|gb|JAA02297.1| replication factor C (activator 1) 5, 36.5kDa [Pan troglodytes]
gi|410251550|gb|JAA13742.1| replication factor C (activator 1) 5, 36.5kDa [Pan troglodytes]
gi|410296138|gb|JAA26669.1| replication factor C (activator 1) 5, 36.5kDa [Pan troglodytes]
gi|410333015|gb|JAA35454.1| replication factor C (activator 1) 5, 36.5kDa [Pan troglodytes]
Length = 340
Score = 406 bits (1043), Expect = e-111, Method: Compositional matrix adjust.
Identities = 195/327 (59%), Positives = 250/327 (76%), Gaps = 4/327 (1%)
Query: 38 IKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARK 97
I+ PWVEKYRPQ+L D+ +H+DI+ TI + +E+RLPHLLLYGPPGTGKTSTILA A++
Sbjct: 17 IRNLPWVEKYRPQTLNDLISHQDILSTIQKFINEDRLPHLLLYGPPGTGKTSTILACAKQ 76
Query: 98 LY-GAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKD 156
LY ++ +M+LELNASDDRGID+VR I FAST++ K KLV+LDEADAMT+D
Sbjct: 77 LYKDKEFGSMVLELNASDDRGIDIVRGPILSFASTRTI---FKKGFKLVILDEADAMTQD 133
Query: 157 AQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAE 216
AQ ALRRVIEK+T+NTRF LICN ++KIIPALQSRCTRFRF PL P + RL+HV+E E
Sbjct: 134 AQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEE 193
Query: 217 GLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYW 276
+D++E G+ ALV L +GDMR+ALNILQST+MA ++TEE VY CTG+PL DI I W
Sbjct: 194 KVDISEDGMKALVTLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKSDIANILDW 253
Query: 277 LLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLS 336
+LN F +++ I+E+K KGLAL DI+ E+ +FV ++ PS VR+ L+ +ADIEYRLS
Sbjct: 254 MLNRDFTTAYRNITELKTLKGLALHDILTEIHLFVHRVDFPSSVRIHLLTKMADIEYRLS 313
Query: 337 FGCNDKLQLGSIISTFTQARSAIVAAA 363
G N+K+QL S+I+ F R IVA A
Sbjct: 314 VGTNEKIQLSSLIAAFQVTRDLIVAEA 340
>gi|224072550|ref|XP_002188696.1| PREDICTED: replication factor C subunit 5 [Taeniopygia guttata]
Length = 329
Score = 405 bits (1042), Expect = e-110, Method: Compositional matrix adjust.
Identities = 195/323 (60%), Positives = 250/323 (77%), Gaps = 4/323 (1%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRPQ+L+++ HRDI+ T+ R SE+RLPHLLLYGPPGTGKTSTILA AR+LY
Sbjct: 10 PWVEKYRPQALSELVFHRDILSTVQRFISEDRLPHLLLYGPPGTGKTSTILACARQLYRE 69
Query: 102 -QYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFA 160
++ +M+LELNASDDRGID+VR I FAST++ K KLV+LDEADAMT+DAQ A
Sbjct: 70 REFSSMVLELNASDDRGIDIVRGPILSFASTRTI---FKKGFKLVILDEADAMTQDAQNA 126
Query: 161 LRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDV 220
LRRVIEK+T+NTRF LICN ++KIIPALQSRCTRFRF PL P + RL+HVI+ EG+DV
Sbjct: 127 LRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLQHVIQEEGVDV 186
Query: 221 TEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNE 280
TE G+ ALV L +GDMR+ALNILQST MA ++TEE VY CTG+PL DI I W+LN+
Sbjct: 187 TEDGMKALVTLSSGDMRRALNILQSTSMAFGKVTEENVYTCTGHPLKSDIANILDWMLNQ 246
Query: 281 SFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCN 340
F+ ++++I E+K KGLAL DI+ E+ +FV ++ P +R++L+ LADIEYRL+ G +
Sbjct: 247 DFSTAYRKIMELKTLKGLALQDILTEIHLFVHRVDFPPSIRIQLLIKLADIEYRLAAGTS 306
Query: 341 DKLQLGSIISTFTQARSAIVAAA 363
+K+QL S+I+ F R +VA A
Sbjct: 307 EKIQLSSLIAAFQVTRDLVVAEA 329
>gi|157821267|ref|NP_001100616.1| replication factor C subunit 5 [Rattus norvegicus]
gi|149063502|gb|EDM13825.1| replication factor C (activator 1) 5 (predicted) [Rattus
norvegicus]
gi|197245812|gb|AAI68902.1| Replication factor C (activator 1) 5 [Rattus norvegicus]
Length = 338
Score = 405 bits (1042), Expect = e-110, Method: Compositional matrix adjust.
Identities = 196/323 (60%), Positives = 249/323 (77%), Gaps = 4/323 (1%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLY-G 100
PWVEKYRPQ+LAD+ +H+DI+ TI + SE+RLPHLLLYGPPGTGKTSTILA A++LY
Sbjct: 19 PWVEKYRPQTLADLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKD 78
Query: 101 AQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFA 160
++ +M+LELNASDDRGID+VR I FAST++ K KLV+LDEADAMT+DAQ A
Sbjct: 79 KEFGSMVLELNASDDRGIDIVRGPILSFASTRTI---FKRGFKLVILDEADAMTQDAQNA 135
Query: 161 LRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDV 220
LRRVIEK+T+NTRF LICN ++KIIPALQSRCTRFRF PL P + RL+HV++ E +D+
Sbjct: 136 LRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVQEENVDI 195
Query: 221 TEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNE 280
+E G+ ALV L +GDMR+ALNILQST+MA ++TEE VY CTG+PL DI I W+LN+
Sbjct: 196 SEDGMKALVTLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKTDIANILDWMLNQ 255
Query: 281 SFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCN 340
F ++K I E+K KGLAL DI+ EV +FV ++ PS VR+ L+ +ADIEYRLS G +
Sbjct: 256 DFTTAYKNIMELKTLKGLALHDILTEVHLFVHRVDFPSSVRMHLLTKMADIEYRLSVGTS 315
Query: 341 DKLQLGSIISTFTQARSAIVAAA 363
+K+QL S+I+ F R IVA A
Sbjct: 316 EKIQLSSLIAAFQVTRDLIVAEA 338
>gi|432116793|gb|ELK37418.1| Replication factor C subunit 5 [Myotis davidii]
Length = 341
Score = 405 bits (1041), Expect = e-110, Method: Compositional matrix adjust.
Identities = 195/327 (59%), Positives = 250/327 (76%), Gaps = 4/327 (1%)
Query: 38 IKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARK 97
I+ PWVEKYRPQ+L+D+ +H+DI+ TI + SE+RLPHLLLYGPPGTGKTSTILA A++
Sbjct: 18 IRNLPWVEKYRPQTLSDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQ 77
Query: 98 LY-GAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKD 156
LY ++ +M+LELNASDDRGID+VR I FAST++ K KLV+LDEADAMT+D
Sbjct: 78 LYKDKEFGSMVLELNASDDRGIDIVRGPILSFASTRTI---FKKGFKLVILDEADAMTQD 134
Query: 157 AQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAE 216
AQ ALRRVIEK+T+NTRF LICN ++KIIPALQSRCTRFRF PL P + RL+HVIE E
Sbjct: 135 AQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVIEEE 194
Query: 217 GLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYW 276
+DV+E G+ AL+ L +GDMR+ALNILQST MA ++TEE VY CTG+PL DI I W
Sbjct: 195 KVDVSEDGMKALITLSSGDMRRALNILQSTSMAFSKVTEETVYTCTGHPLKSDIANILDW 254
Query: 277 LLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLS 336
+LN+ F +++ I E+K KGLAL DI+ E+ +FV ++ PS VR+ L+ +ADIEYRLS
Sbjct: 255 MLNQDFTTAYRNIMELKTLKGLALHDILTEIHLFVHRVDFPSSVRIHLLTKMADIEYRLS 314
Query: 337 FGCNDKLQLGSIISTFTQARSAIVAAA 363
G ++K+QL S+I+ F R IV+ A
Sbjct: 315 AGTSEKIQLSSLIAAFQVTRDLIVSEA 341
>gi|395744928|ref|XP_002823879.2| PREDICTED: replication factor C subunit 5 isoform 3 [Pongo abelii]
Length = 340
Score = 405 bits (1040), Expect = e-110, Method: Compositional matrix adjust.
Identities = 196/327 (59%), Positives = 250/327 (76%), Gaps = 4/327 (1%)
Query: 38 IKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARK 97
I+ PWVEKYRPQ+L D+ +H+DI+ TI + E+RLPHLLLYGPPGTGKTSTILA A++
Sbjct: 17 IRNLPWVEKYRPQTLNDLISHQDILSTIQKFIIEDRLPHLLLYGPPGTGKTSTILACAKQ 76
Query: 98 LY-GAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKD 156
LY ++ +M+LELNASDDRGID+VR I FAST++ K KLV+LDEADAMT+D
Sbjct: 77 LYKDKEFGSMVLELNASDDRGIDIVRGPILSFASTRTI---FKKGFKLVILDEADAMTQD 133
Query: 157 AQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAE 216
AQ ALRRVIEK+T+NTRF LICN ++KIIPALQSRCTRFRF PL P + RL+HV+E E
Sbjct: 134 AQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEE 193
Query: 217 GLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYW 276
+DV+E G+ ALV L +GDMR+ALNILQST+MA ++TEE VY CTG+PL DI I W
Sbjct: 194 KVDVSEDGMKALVTLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKSDIANILDW 253
Query: 277 LLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLS 336
+LN+ F +++ I+E+K KGLAL DI+ E+ +FV ++ PS VR+ L+ +ADIEYRLS
Sbjct: 254 MLNQDFTTAYRNITELKTLKGLALHDILTEIHLFVHRVDFPSSVRIHLLIKMADIEYRLS 313
Query: 337 FGCNDKLQLGSIISTFTQARSAIVAAA 363
G N+K+QL S+I+ F R IVA A
Sbjct: 314 VGTNEKIQLSSLIAAFQVTRDLIVAEA 340
>gi|194042984|ref|XP_001926304.1| PREDICTED: replication factor C subunit 5 [Sus scrofa]
Length = 340
Score = 405 bits (1040), Expect = e-110, Method: Compositional matrix adjust.
Identities = 194/327 (59%), Positives = 249/327 (76%), Gaps = 4/327 (1%)
Query: 38 IKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARK 97
I+ PWVEKYRPQ+L D+ +H+DI+ TI + SE+RLPHLLLYGPPGTGKTSTILA A++
Sbjct: 17 IRNLPWVEKYRPQTLDDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQ 76
Query: 98 LY-GAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKD 156
LY ++ +M+LELNASDDRGID+VR I FAST++ K KLV+LDEADAMT+D
Sbjct: 77 LYKDKEFGSMVLELNASDDRGIDIVRGPILSFASTRTI---FKKGFKLVILDEADAMTQD 133
Query: 157 AQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAE 216
AQ ALRRVIEK+T+NTRF LICN ++KIIPALQSRCTRFRF PL P + RL+HV+E E
Sbjct: 134 AQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEE 193
Query: 217 GLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYW 276
+D++E G+ AL+ L +GDMR+ALNILQST+MA ++TEE VY CTG+PL DI I W
Sbjct: 194 KVDISEDGMKALITLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKSDIANILDW 253
Query: 277 LLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLS 336
+LN+ F +++ I E+K KGLAL DI+ E+ +FV ++ PS VR+ L+ +ADIEYRLS
Sbjct: 254 MLNQDFTTAYRNIMELKTLKGLALNDILTEIHLFVHRVDFPSSVRIHLLTKMADIEYRLS 313
Query: 337 FGCNDKLQLGSIISTFTQARSAIVAAA 363
G N+K+QL S+I+ F R IV A
Sbjct: 314 VGTNEKIQLSSLIAAFQVTRDLIVTEA 340
>gi|351694763|gb|EHA97681.1| Replication factor C subunit 5 [Heterocephalus glaber]
Length = 340
Score = 404 bits (1039), Expect = e-110, Method: Compositional matrix adjust.
Identities = 196/327 (59%), Positives = 250/327 (76%), Gaps = 4/327 (1%)
Query: 38 IKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARK 97
I+ PWVEKYRPQ+L D+ +H+DI+ TI + SE+RLPHLLLYGPPGTGKTSTILA A++
Sbjct: 17 IRNLPWVEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQ 76
Query: 98 LYG-AQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKD 156
LY ++ +M+LELNASDDRGID+VR I FAST++ K KLV+LDEADAMT+D
Sbjct: 77 LYKDKEFGSMVLELNASDDRGIDIVRGPILSFASTRTI---FKKGFKLVILDEADAMTQD 133
Query: 157 AQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAE 216
AQ ALRRVIEK+T+NTRF LICN ++KIIPALQSRCTRFRF PL P + RL+HVI+ E
Sbjct: 134 AQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVIKEE 193
Query: 217 GLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYW 276
+DV+E G+ ALV L +GDMR+ALNILQST+MA ++TEE VY CTG+PL DI I W
Sbjct: 194 KVDVSEDGMKALVTLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKSDIANILDW 253
Query: 277 LLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLS 336
+LN+ F +++ I E+K KGLAL DI+ E+ +FV ++ PS VR+ L+ +ADIEYRLS
Sbjct: 254 MLNQDFTTAYRNIMELKTLKGLALHDILTEIHLFVHRVDFPSSVRIHLLTKMADIEYRLS 313
Query: 337 FGCNDKLQLGSIISTFTQARSAIVAAA 363
G ++K+QL S+I+ F R IVA A
Sbjct: 314 VGTSEKIQLSSLIAAFQVTRDLIVAEA 340
>gi|301768619|ref|XP_002919725.1| PREDICTED: replication factor C subunit 5-like [Ailuropoda
melanoleuca]
Length = 340
Score = 404 bits (1039), Expect = e-110, Method: Compositional matrix adjust.
Identities = 196/327 (59%), Positives = 249/327 (76%), Gaps = 4/327 (1%)
Query: 38 IKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARK 97
I+ PWVEKYRPQ+L D+ +H+DI+ TI + SE+RLPHLLLYGPPGTGKTSTILA A++
Sbjct: 17 IRNLPWVEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQ 76
Query: 98 LY-GAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKD 156
LY ++ +M+LELNASDDRGID+VR I FAST++ K KLV+LDEADAMT+D
Sbjct: 77 LYKDKEFGSMVLELNASDDRGIDIVRGPILSFASTRTI---FKKGFKLVILDEADAMTQD 133
Query: 157 AQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAE 216
AQ ALRRVIEK+T+NTRF LICN ++KIIPALQSRCTRFRF PL P + RL+HVI+ E
Sbjct: 134 AQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVIKEE 193
Query: 217 GLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYW 276
+D++E G+ ALV L +GDMR+ALNILQST+MA ++TEE VY CTG+PL DI I W
Sbjct: 194 KVDLSEDGMKALVTLASGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKSDIANILDW 253
Query: 277 LLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLS 336
+LN+ F +++ I+E+K KGLAL DI+ E +FV ++ PS VRV L+ +ADIEYRLS
Sbjct: 254 MLNQDFTTAYRNITELKTLKGLALHDILTETHLFVHRVDFPSSVRVHLLTKMADIEYRLS 313
Query: 337 FGCNDKLQLGSIISTFTQARSAIVAAA 363
G N+K+QL S+I+ F R IV A
Sbjct: 314 VGTNEKIQLSSLIAAFQVTRDLIVTEA 340
>gi|149720613|ref|XP_001490846.1| PREDICTED: replication factor C subunit 5 [Equus caballus]
Length = 340
Score = 404 bits (1037), Expect = e-110, Method: Compositional matrix adjust.
Identities = 194/333 (58%), Positives = 251/333 (75%), Gaps = 4/333 (1%)
Query: 32 SGTPPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTI 91
S I+ PWVEKYRPQ+L D+ +H+DI+ TI + SE+RLPHLLLYGPPGTGKTSTI
Sbjct: 11 SAATAKIRNLPWVEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTI 70
Query: 92 LAVARKLY-GAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEA 150
LA A++LY ++ +M+LELNASDDRGID+VR I FAST++ K KLV+LDEA
Sbjct: 71 LACAKQLYKDKEFGSMVLELNASDDRGIDIVRGPILSFASTRTI---FKKGFKLVILDEA 127
Query: 151 DAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLK 210
DAMT+DAQ ALRRVIEK+T+NTRF LICN ++KIIPALQSRCTRFRF PL P + RL+
Sbjct: 128 DAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLQ 187
Query: 211 HVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDI 270
HV+E E + ++E G+ ALV L +GDMR+ALNILQST+MA ++TEE VY CTG+PL DI
Sbjct: 188 HVVEEEKVAISEDGMKALVTLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKSDI 247
Query: 271 EQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLAD 330
I W+LN+ F +++ I+E+K KGLAL DI+ E+ +FV ++ P+ VR+ L+ +AD
Sbjct: 248 ANILDWMLNQDFTTAYRNITELKTLKGLALHDILTEIHLFVHRVDFPTSVRIHLLTKMAD 307
Query: 331 IEYRLSFGCNDKLQLGSIISTFTQARSAIVAAA 363
IEYRLS G N+K+QL S+I+ F R IV+ A
Sbjct: 308 IEYRLSVGTNEKIQLSSLIAAFQVTRDLIVSEA 340
>gi|307108040|gb|EFN56281.1| hypothetical protein CHLNCDRAFT_145161 [Chlorella variabilis]
Length = 328
Score = 404 bits (1037), Expect = e-110, Method: Compositional matrix adjust.
Identities = 186/323 (57%), Positives = 252/323 (78%), Gaps = 3/323 (0%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PW EKYRP++L ++AH DI+DTI +L EN+LPHLL YGPPGTGKTSTILA+AR++YG+
Sbjct: 9 PWSEKYRPRTLDQISAHTDIIDTIRKLLDENQLPHLLFYGPPGTGKTSTILAIAREIYGS 68
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFAL 161
NM LELNASDDRGI VVR +IQDFAST++ KL++LDE DAMTKDAQFAL
Sbjct: 69 SLGNMTLELNASDDRGIAVVRNEIQDFASTRTI---FSNKFKLIILDECDAMTKDAQFAL 125
Query: 162 RRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVT 221
RRV+EKYT+N RF LICN V+KIIPALQSRCTRFRF PL V RL+++ + E + VT
Sbjct: 126 RRVMEKYTRNARFCLICNYVSKIIPALQSRCTRFRFQPLPGEFVKGRLEYICQQESIKVT 185
Query: 222 EGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNES 281
+GGL AL+ L GDMR+ LN+LQST M++ ++T ++ Y G PLP+DIE+ + WLLNE
Sbjct: 186 QGGLEALIELGCGDMRRTLNLLQSTVMSAGEVTGDSAYATAGKPLPQDIERCAQWLLNEP 245
Query: 282 FADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCND 341
++F+ + +++++KG+ALVDI++++ FVF+I MP VR++L++ +ADIE+RL++G +D
Sbjct: 246 LGEAFQHMLDLQLQKGVALVDILQQLHPFVFRIGMPPPVRIQLVSKMADIEHRLAYGTSD 305
Query: 342 KLQLGSIISTFTQARSAIVAAAK 364
+LQLG++ F +A+ IVAAAK
Sbjct: 306 RLQLGALCGAFAEAKDGIVAAAK 328
>gi|47115239|emb|CAG28579.1| RFC5 [Homo sapiens]
Length = 340
Score = 403 bits (1036), Expect = e-110, Method: Compositional matrix adjust.
Identities = 193/327 (59%), Positives = 250/327 (76%), Gaps = 4/327 (1%)
Query: 38 IKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARK 97
I+ PWVEKYRPQ+L D+ +H+DI+ TI + +E+RLPHLLLYGPPGTGKTSTILA A++
Sbjct: 17 IRNLPWVEKYRPQTLNDLISHQDILSTIQKFINEDRLPHLLLYGPPGTGKTSTILACAKQ 76
Query: 98 LY-GAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKD 156
LY ++ +M+LELNASDDRGID++R I FAST++ K KLV+LDEADAMT+D
Sbjct: 77 LYKDKEFGSMVLELNASDDRGIDIIRGPILSFASTRTI---FKKGFKLVILDEADAMTQD 133
Query: 157 AQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAE 216
AQ ALR VIEK+T+NTRF LICN ++KIIPALQSRCTRFRF PL P + RL+HV+E E
Sbjct: 134 AQNALRGVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEE 193
Query: 217 GLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYW 276
+D++E G+ ALV L +GDMR+ALNILQST+MA ++TEE VY CTG+PL DI I W
Sbjct: 194 KVDISEDGMKALVTLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKSDIANILDW 253
Query: 277 LLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLS 336
+LN+ F +++ I+E+K KGLAL DI+ E+ +FV ++ PS VR+ L+ +ADIEYRLS
Sbjct: 254 MLNQDFTTAYRNITELKTLKGLALHDILTEIHLFVHRVDFPSSVRIHLLTKMADIEYRLS 313
Query: 337 FGCNDKLQLGSIISTFTQARSAIVAAA 363
G N+K+QL S+I+ F R IVA A
Sbjct: 314 VGTNEKIQLSSLIAAFQVTRDLIVAEA 340
>gi|348584882|ref|XP_003478201.1| PREDICTED: replication factor C subunit 5-like isoform 1 [Cavia
porcellus]
Length = 340
Score = 403 bits (1036), Expect = e-110, Method: Compositional matrix adjust.
Identities = 194/327 (59%), Positives = 250/327 (76%), Gaps = 4/327 (1%)
Query: 38 IKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARK 97
I+ PWVEKYRPQ+L D+ +H+DI+ TI + SE+RLPHLLLYGPPGTGKTSTILA A++
Sbjct: 17 IRNLPWVEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQ 76
Query: 98 LY-GAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKD 156
LY ++ +M+LELNASDDRGID+VR I FAST++ K KLV+LDEADAMT+D
Sbjct: 77 LYKDKEFGSMVLELNASDDRGIDIVRGPILSFASTRTI---FKKGFKLVILDEADAMTQD 133
Query: 157 AQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAE 216
AQ ALRRVIEK+T+NTRF LICN ++KIIPALQSRCTRFRF PL P + RL+HV++ E
Sbjct: 134 AQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVKEE 193
Query: 217 GLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYW 276
+D++E G+ ALV L +GDMR+ALNILQST+MA ++TEE VY CTG+PL DI I W
Sbjct: 194 KVDISEDGMKALVTLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKSDIANILDW 253
Query: 277 LLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLS 336
+LN+ F +++ I E+K KGLAL DI+ E+ +FV ++ PS VR+ L+ +ADIEYRLS
Sbjct: 254 MLNQDFTTAYRNIMELKTLKGLALHDILTEIHLFVHRVDFPSSVRIHLLTKMADIEYRLS 313
Query: 337 FGCNDKLQLGSIISTFTQARSAIVAAA 363
G ++K+QL S+I+ F R IVA A
Sbjct: 314 VGTSEKIQLSSLIAAFQVTRDLIVAEA 340
>gi|114647195|ref|XP_001156572.1| PREDICTED: replication factor C subunit 5 isoform 5 [Pan
troglodytes]
Length = 340
Score = 403 bits (1036), Expect = e-110, Method: Compositional matrix adjust.
Identities = 194/327 (59%), Positives = 249/327 (76%), Gaps = 4/327 (1%)
Query: 38 IKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARK 97
I+ PWVEKYRPQ+L D+ +H+DI+ TI + +E+RLPHLLLYGPPGTGKTSTILA A++
Sbjct: 17 IRNLPWVEKYRPQTLNDLISHQDILSTIQKFINEDRLPHLLLYGPPGTGKTSTILACAKQ 76
Query: 98 LY-GAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKD 156
LY ++ +M+LELNASDDRGID+VR I FAST++ K KLV+LDEADAMT+D
Sbjct: 77 LYKDKEFGSMVLELNASDDRGIDIVRGPILSFASTRTI---FKKGFKLVILDEADAMTQD 133
Query: 157 AQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAE 216
AQ ALRRVIEK+T+NTRF LICN ++KIIPALQSRCTRFRF PL P + RL+HV+E E
Sbjct: 134 AQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEE 193
Query: 217 GLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYW 276
+ ++E G+ ALV L +GDMR+ALNILQST+MA ++TEE VY CTG+PL DI I W
Sbjct: 194 KVGISEDGMKALVTLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKSDIANILDW 253
Query: 277 LLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLS 336
+LN F +++ I+E+K KGLAL DI+ E+ +FV ++ PS VR+ L+ +ADIEYRLS
Sbjct: 254 MLNRDFTTAYRNITELKTLKGLALHDILTEIHLFVHRVDFPSSVRIHLLTKMADIEYRLS 313
Query: 337 FGCNDKLQLGSIISTFTQARSAIVAAA 363
G N+K+QL S+I+ F R IVA A
Sbjct: 314 VGTNEKIQLSSLIAAFQVTRDLIVAEA 340
>gi|354466990|ref|XP_003495954.1| PREDICTED: replication factor C subunit 5 [Cricetulus griseus]
Length = 338
Score = 403 bits (1035), Expect = e-110, Method: Compositional matrix adjust.
Identities = 192/323 (59%), Positives = 249/323 (77%), Gaps = 4/323 (1%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLY-G 100
PWVEKYRPQ+LAD+ +H+DI+ +I + SE+RLPHLLLYGPPGTGKTSTILA A++LY
Sbjct: 19 PWVEKYRPQTLADLISHQDILSSIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKD 78
Query: 101 AQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFA 160
++ +M+LELNASDDRGID+VR I FAST++ K KLV+LDEADAMT+DAQ A
Sbjct: 79 KEFGSMVLELNASDDRGIDIVRGPILSFASTRTI---FKKGFKLVILDEADAMTQDAQNA 135
Query: 161 LRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDV 220
LRRVIEK+T+NTRF LICN ++KIIPALQSRCTRFRF PL P + RL+HV++ E +D+
Sbjct: 136 LRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVQEENVDI 195
Query: 221 TEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNE 280
+E G+ AL+ L +GDMR+ALNILQST+MA ++TEE VY CTG+PL DI I W+LN+
Sbjct: 196 SEDGMKALITLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKTDIANILDWMLNQ 255
Query: 281 SFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCN 340
F +++ I E+K KGLAL DI+ EV +FV ++ PS VR+ L+ +ADIEYRLS G +
Sbjct: 256 DFTTAYRHIMELKTLKGLALHDILTEVHLFVHRVDFPSSVRIHLLTKMADIEYRLSVGTS 315
Query: 341 DKLQLGSIISTFTQARSAIVAAA 363
+K+QL S+I+ F R IV+ A
Sbjct: 316 EKIQLSSLIAAFQVTRDLIVSEA 338
>gi|444723208|gb|ELW63869.1| Replication factor C subunit 5 [Tupaia chinensis]
Length = 341
Score = 402 bits (1034), Expect = e-109, Method: Compositional matrix adjust.
Identities = 194/323 (60%), Positives = 247/323 (76%), Gaps = 4/323 (1%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLY-G 100
PWVEKYRPQ+L D+ +H+DI+ TI + SE+RLPHLLLYGPPGTGKTSTILA A++LY
Sbjct: 22 PWVEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKD 81
Query: 101 AQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFA 160
++ +M+LELNASDDRGID+VR I FAST++ K KLV+LDEADAMT+DAQ A
Sbjct: 82 KEFGSMVLELNASDDRGIDIVRGPILSFASTRTI---FKKGFKLVILDEADAMTQDAQNA 138
Query: 161 LRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDV 220
LRRVIEK+T+NTRF LICN ++KIIPALQSRCTRFRF PL P + RL+HV+ E +D+
Sbjct: 139 LRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVGEENVDI 198
Query: 221 TEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNE 280
TE G+ AL+ L +GDMR+ALNILQST+MA ++TEE V+ CTG+PL DI I W+LN+
Sbjct: 199 TEDGMKALITLSSGDMRRALNILQSTNMAFGKVTEETVHTCTGHPLRSDIANILDWMLNQ 258
Query: 281 SFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCN 340
F +++ I E+K KGLAL DI+ E+ +FV ++ PS VRV L+ +ADIEYRLS G N
Sbjct: 259 DFTTAYRNIMELKTLKGLALHDILTEIHLFVHRVDFPSSVRVHLLTKMADIEYRLSVGTN 318
Query: 341 DKLQLGSIISTFTQARSAIVAAA 363
+K+QL S+I+ F R IVA A
Sbjct: 319 EKIQLSSLIAAFQVTRDLIVAEA 341
>gi|345790910|ref|XP_534696.3| PREDICTED: replication factor C subunit 5 [Canis lupus familiaris]
Length = 339
Score = 402 bits (1034), Expect = e-109, Method: Compositional matrix adjust.
Identities = 195/327 (59%), Positives = 248/327 (75%), Gaps = 4/327 (1%)
Query: 38 IKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARK 97
I+ PWVEKYRPQ+L D+ +H+DI+ TI + SE+RLPHLLLYGPPGTGKTSTILA A++
Sbjct: 16 IRNLPWVEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQ 75
Query: 98 LY-GAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKD 156
LY ++ +M+LELNASDDRGID+VR I FAST++ K KLV+LDEADAMT+D
Sbjct: 76 LYKDKEFGSMVLELNASDDRGIDIVRGPILSFASTRTI---FKKGFKLVILDEADAMTQD 132
Query: 157 AQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAE 216
AQ ALRRVIEK+T+NTRF LICN ++KIIPALQSRCTRFRF PL P + RL+HV+ E
Sbjct: 133 AQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVGEE 192
Query: 217 GLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYW 276
+D++E G+ ALV L +GDMR+ALNILQST+MA ++TEE VY CTG+PL DI I W
Sbjct: 193 KVDLSEDGMKALVTLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKSDIANILDW 252
Query: 277 LLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLS 336
+LN+ F +++ I E+K KGLAL DI+ E+ +FV ++ PS VRV L+ +ADIEYRLS
Sbjct: 253 MLNQDFTTAYRNIMELKTLKGLALHDILTEIHLFVHRVDFPSSVRVHLLTKMADIEYRLS 312
Query: 337 FGCNDKLQLGSIISTFTQARSAIVAAA 363
G N+K+QL S+I+ F R IV A
Sbjct: 313 VGTNEKIQLSSLIAAFQVTRDLIVTEA 339
>gi|344295239|ref|XP_003419321.1| PREDICTED: replication factor C subunit 5 [Loxodonta africana]
Length = 343
Score = 401 bits (1030), Expect = e-109, Method: Compositional matrix adjust.
Identities = 195/326 (59%), Positives = 248/326 (76%), Gaps = 7/326 (2%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYG- 100
PWVEKYRPQ+L D+ +H+DI+ TI + SE+RLPHLLLYGPPGTGKTSTILA A++LY
Sbjct: 21 PWVEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKD 80
Query: 101 AQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFA 160
++ +M+LELNASDDRGID+VR I FAST++ K KLV+LDEADAMT+DAQ A
Sbjct: 81 KEFGSMVLELNASDDRGIDIVRGPILSFASTRTI---FKKGFKLVILDEADAMTQDAQNA 137
Query: 161 LRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDV 220
LRRVIEK+T+NTRF LICN ++KIIPALQSRCTRFRF PL P + RL+HV+E E +D+
Sbjct: 138 LRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVDI 197
Query: 221 TEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNE 280
+E G+ ALV L +GDMR+ALNILQST+MA ++TEE VY CTG+PL DI I W+LN+
Sbjct: 198 SEDGMKALVTLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKSDIANILEWMLNQ 257
Query: 281 SFADSFKR---ISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSF 337
F +++ I E+K KGLAL DI+ E+ +FV ++ PS VR+ L+ +ADIEYRLS
Sbjct: 258 DFTTAYRNILYIMELKTLKGLALHDILTEIHLFVHRVDFPSSVRIHLLIKMADIEYRLSL 317
Query: 338 GCNDKLQLGSIISTFTQARSAIVAAA 363
G N+K+QL S+I+ F R IVA A
Sbjct: 318 GTNEKIQLSSLIAAFQVTRDLIVAQA 343
>gi|395834095|ref|XP_003790050.1| PREDICTED: replication factor C subunit 5 [Otolemur garnettii]
Length = 456
Score = 400 bits (1027), Expect = e-109, Method: Compositional matrix adjust.
Identities = 194/327 (59%), Positives = 247/327 (75%), Gaps = 4/327 (1%)
Query: 38 IKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARK 97
I+ PWVEKYRPQ+L D+ +H+DI+ TI + SE+RLPHLL YGPPGTGKTSTILA A++
Sbjct: 133 IRNLPWVEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLFYGPPGTGKTSTILACAKR 192
Query: 98 LYG-AQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKD 156
LY ++ +M+LELNASDDRGID+VR I FAST++ K KLV+LDEADAMT+D
Sbjct: 193 LYKDKEFGSMVLELNASDDRGIDIVRGPILSFASTRTI---FKKGFKLVILDEADAMTQD 249
Query: 157 AQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAE 216
AQ ALRRVIEK+T+NTRF LICN ++KIIPALQSRCTRFRF PL P + RL+HV+E E
Sbjct: 250 AQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEE 309
Query: 217 GLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYW 276
+D++E G+ ALV L +GDMR+ALNILQST+MA ++TEE VY CTG+PL DI I W
Sbjct: 310 KVDISEDGMKALVTLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKSDIANILDW 369
Query: 277 LLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLS 336
+LN F +++ I E+K KGLAL DI+ E+ +FV ++ PS VR+ L+ +ADIEYRLS
Sbjct: 370 MLNHDFTTAYRNIMELKTLKGLALHDILTEIHLFVHRVDFPSSVRIYLLTKMADIEYRLS 429
Query: 337 FGCNDKLQLGSIISTFTQARSAIVAAA 363
G N+K+QL S+I+ F R IV A
Sbjct: 430 VGTNEKIQLSSLIAAFQVTRDLIVTEA 456
>gi|194306567|ref|NP_853556.2| replication factor C subunit 5 isoform 2 [Homo sapiens]
gi|193787684|dbj|BAG52890.1| unnamed protein product [Homo sapiens]
Length = 319
Score = 398 bits (1022), Expect = e-108, Method: Compositional matrix adjust.
Identities = 191/321 (59%), Positives = 247/321 (76%), Gaps = 4/321 (1%)
Query: 44 VEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLY-GAQ 102
VEKYRPQ+L D+ +H+DI+ TI + +E+RLPHLLLYGPPGTGKTSTILA A++LY +
Sbjct: 2 VEKYRPQTLNDLISHQDILSTIQKFINEDRLPHLLLYGPPGTGKTSTILACAKQLYKDKE 61
Query: 103 YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALR 162
+ +M+LELNASDDRGID++R I FAST++ K KLV+LDEADAMT+DAQ ALR
Sbjct: 62 FGSMVLELNASDDRGIDIIRGPILSFASTRTI---FKKGFKLVILDEADAMTQDAQNALR 118
Query: 163 RVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTE 222
RVIEK+T+NTRF LICN ++KIIPALQSRCTRFRF PL P + RL+HV+E E +D++E
Sbjct: 119 RVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVDISE 178
Query: 223 GGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESF 282
G+ ALV L +GDMR+ALNILQST+MA ++TEE VY CTG+PL DI I W+LN+ F
Sbjct: 179 DGMKALVTLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKSDIANILDWMLNQDF 238
Query: 283 ADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDK 342
+++ I+E+K KGLAL DI+ E+ +FV ++ PS VR+ L+ +ADIEYRLS G N+K
Sbjct: 239 TTAYRNITELKTLKGLALHDILTEIHLFVHRVDFPSSVRIHLLTKMADIEYRLSVGTNEK 298
Query: 343 LQLGSIISTFTQARSAIVAAA 363
+QL S+I+ F R IVA A
Sbjct: 299 IQLSSLIAAFQVTRDLIVAEA 319
>gi|332164786|ref|NP_001193730.1| replication factor C subunit 5 isoform 4 [Homo sapiens]
gi|208967278|dbj|BAG73653.1| replication factor C [synthetic construct]
Length = 337
Score = 397 bits (1021), Expect = e-108, Method: Compositional matrix adjust.
Identities = 192/327 (58%), Positives = 249/327 (76%), Gaps = 7/327 (2%)
Query: 38 IKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARK 97
I+ PWVEKYRPQ+L D+ +H+DI+ TI + +E+RLPHLLLYGPPGTGKTSTILA A++
Sbjct: 17 IRNLPWVEKYRPQTLNDLISHQDILSTIQKFINEDRLPHLLLYGPPGTGKTSTILACAKQ 76
Query: 98 LY-GAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKD 156
LY ++ +M+LELNASDDRGID++R I FAST++ K KLV+LDEADAMT+D
Sbjct: 77 LYKDKEFGSMVLELNASDDRGIDIIRGPILSFASTRTI---FKKGFKLVILDEADAMTQD 133
Query: 157 AQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAE 216
AQ ALRRVIEK+T+NTRF LICN ++KIIPALQSRCTRFRF PL P + RL+HV+E E
Sbjct: 134 AQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEE 193
Query: 217 GLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYW 276
+D++E G+ ALV L +GDMR+ALNILQST+MA ++TEE VY CTG+PL DI I W
Sbjct: 194 KVDISEDGMKALVTLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKSDIANILDW 253
Query: 277 LLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLS 336
+LN+ F ++++ +K KGLAL DI+ E+ +FV ++ PS VR+ L+ +ADIEYRLS
Sbjct: 254 MLNQDFTTAYRK---LKTLKGLALHDILTEIHLFVHRVDFPSSVRIHLLTKMADIEYRLS 310
Query: 337 FGCNDKLQLGSIISTFTQARSAIVAAA 363
G N+K+QL S+I+ F R IVA A
Sbjct: 311 VGTNEKIQLSSLIAAFQVTRDLIVAEA 337
>gi|62087564|dbj|BAD92229.1| replication factor C 5 isoform 1 variant [Homo sapiens]
Length = 351
Score = 397 bits (1021), Expect = e-108, Method: Compositional matrix adjust.
Identities = 192/327 (58%), Positives = 249/327 (76%), Gaps = 7/327 (2%)
Query: 38 IKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARK 97
I+ PWVEKYRPQ+L D+ +H+DI+ TI + +E+RLPHLLLYGPPGTGKTSTILA A++
Sbjct: 31 IRNLPWVEKYRPQTLNDLISHQDILSTIQKFINEDRLPHLLLYGPPGTGKTSTILACAKQ 90
Query: 98 LY-GAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKD 156
LY ++ +M+LELNASDDRGID++R I FAST++ K KLV+LDEADAMT+D
Sbjct: 91 LYKDKEFGSMVLELNASDDRGIDIIRGPILSFASTRTI---FKKGFKLVILDEADAMTQD 147
Query: 157 AQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAE 216
AQ ALRRVIEK+T+NTRF LICN ++KIIPALQSRCTRFRF PL P + RL+HV+E E
Sbjct: 148 AQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEE 207
Query: 217 GLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYW 276
+D++E G+ ALV L +GDMR+ALNILQST+MA ++TEE VY CTG+PL DI I W
Sbjct: 208 KVDISEDGMKALVTLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKSDIANILDW 267
Query: 277 LLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLS 336
+LN+ F ++++ +K KGLAL DI+ E+ +FV ++ PS VR+ L+ +ADIEYRLS
Sbjct: 268 MLNQDFTTAYRK---LKTLKGLALHDILTEIHLFVHRVDFPSSVRIHLLTKMADIEYRLS 324
Query: 337 FGCNDKLQLGSIISTFTQARSAIVAAA 363
G N+K+QL S+I+ F R IVA A
Sbjct: 325 VGTNEKIQLSSLIAAFQVTRDLIVAEA 351
>gi|395514036|ref|XP_003761227.1| PREDICTED: replication factor C subunit 5 [Sarcophilus harrisii]
Length = 343
Score = 397 bits (1020), Expect = e-108, Method: Compositional matrix adjust.
Identities = 191/323 (59%), Positives = 248/323 (76%), Gaps = 4/323 (1%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLY-G 100
PWVEKYRPQ+L D+ +H+DI+ TI + SE+RLPHLLLYGPPGTGKTSTILA A++LY
Sbjct: 24 PWVEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKD 83
Query: 101 AQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFA 160
++++M+LELNASDDRGID+VR I FAST++ K KLV+LDEADAMT+DAQ A
Sbjct: 84 KEFNSMVLELNASDDRGIDIVRGPILSFASTRTI---FKKGFKLVILDEADAMTQDAQNA 140
Query: 161 LRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDV 220
LRRVIEK+T+NTRF LICN ++KIIPALQSRCTRFRF PL P + RL+HVIE E +D+
Sbjct: 141 LRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVIEEEKVDI 200
Query: 221 TEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNE 280
+E G+ AL+ L +GDMR+ALNILQST+MA ++TEE VY CTG+PL DI I W+LN+
Sbjct: 201 SEDGMKALITLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKTDIANILDWMLNQ 260
Query: 281 SFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCN 340
F +++ I E+K KGLAL DI+ E+ +FV ++ P VR+ L+ +ADIE+RL+ G +
Sbjct: 261 DFTTAYRNIMELKTLKGLALHDILTEIHLFVHRVDFPPAVRIHLLIKMADIEHRLAVGTS 320
Query: 341 DKLQLGSIISTFTQARSAIVAAA 363
+K+QL S+I+ F R IVA A
Sbjct: 321 EKIQLSSLIAAFQVTRDLIVAEA 343
>gi|431914245|gb|ELK15503.1| Replication factor C subunit 5 [Pteropus alecto]
Length = 345
Score = 397 bits (1020), Expect = e-108, Method: Compositional matrix adjust.
Identities = 194/331 (58%), Positives = 248/331 (74%), Gaps = 8/331 (2%)
Query: 38 IKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARK 97
I+ PWVEKYRPQ+L D+ +H+DI+ TI + SE+RLPHLLLYGPPGTGKTSTILA A++
Sbjct: 18 IRNLPWVEKYRPQALNDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQ 77
Query: 98 LY-GAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKD 156
LY ++ +M+LELNASDDRGID+VR I FAST++ K KLV+LDEADAMT+D
Sbjct: 78 LYKDKEFGSMVLELNASDDRGIDIVRGPILSFASTRTI---FKKGFKLVILDEADAMTQD 134
Query: 157 AQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAE 216
AQ ALRRVIEK+T+NTRF LICN ++KIIPALQSRCTRFRF PL P + RL+HV+E E
Sbjct: 135 AQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEE 194
Query: 217 GLDVTEGGLAALVRLC----NGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQ 272
+D++E G+ ALV L +GDMR+ALNILQST MA ++TEE VY CTG+PL DI
Sbjct: 195 KVDISEDGMKALVTLSKTLSSGDMRRALNILQSTSMAFGKVTEETVYTCTGHPLKSDIAN 254
Query: 273 ISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIE 332
I W+LN+ F +++ I E+K KGLAL DI+ E+ +FV ++ PS VR+ L+ +ADIE
Sbjct: 255 ILDWMLNQDFTTAYRNIMELKTLKGLALHDILTEIHLFVHRVDFPSSVRIHLLTKMADIE 314
Query: 333 YRLSFGCNDKLQLGSIISTFTQARSAIVAAA 363
YRLS G ++K+QL S+I+ F R IV A
Sbjct: 315 YRLSVGTSEKIQLSSLIAAFQVTRDLIVTEA 345
>gi|440912210|gb|ELR61801.1| Replication factor C subunit 5 [Bos grunniens mutus]
Length = 340
Score = 397 bits (1019), Expect = e-108, Method: Compositional matrix adjust.
Identities = 192/328 (58%), Positives = 249/328 (75%), Gaps = 5/328 (1%)
Query: 38 IKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARK 97
I+ PWVEKYRPQ+L D+ +H+DI+ TI + SE+RLPHLLLYGPPGTGKTSTILA A++
Sbjct: 16 IRNLPWVEKYRPQTLDDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQ 75
Query: 98 LY-GAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKD 156
LY ++ +M+LELNASDDRGID+VR I FAST++ K KLV+LDEADAMT+D
Sbjct: 76 LYKDKEFGSMVLELNASDDRGIDIVRGPILSFASTRTI---FKKGFKLVILDEADAMTQD 132
Query: 157 AQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAE 216
AQ ALRRVIEK+T+NTRF LICN ++KIIPALQSRCTRFRF PL P + RL+HV+E E
Sbjct: 133 AQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEE 192
Query: 217 GLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYW 276
+D++E G+ AL+ L +GDMR+ALNILQST+MA ++TEE VY CTG+PL DI I W
Sbjct: 193 KVDISEDGMKALITLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKSDIANILDW 252
Query: 277 LLNESFADSFK-RISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRL 335
+LN+ F +++ I E+K KGLAL DI+ E+ +FV ++ PS VR+ L+ +ADIEYRL
Sbjct: 253 MLNQDFTTAYRNNIMELKTLKGLALHDILTEIHLFVHRVDFPSSVRIHLLTKMADIEYRL 312
Query: 336 SFGCNDKLQLGSIISTFTQARSAIVAAA 363
+ G ++K+QL S+I+ F R IV A
Sbjct: 313 AVGTSEKIQLSSLIAAFQVTRDLIVTEA 340
>gi|348584884|ref|XP_003478202.1| PREDICTED: replication factor C subunit 5-like isoform 2 [Cavia
porcellus]
Length = 337
Score = 396 bits (1017), Expect = e-107, Method: Compositional matrix adjust.
Identities = 192/327 (58%), Positives = 249/327 (76%), Gaps = 7/327 (2%)
Query: 38 IKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARK 97
I+ PWVEKYRPQ+L D+ +H+DI+ TI + SE+RLPHLLLYGPPGTGKTSTILA A++
Sbjct: 17 IRNLPWVEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQ 76
Query: 98 LY-GAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKD 156
LY ++ +M+LELNASDDRGID+VR I FAST++ K KLV+LDEADAMT+D
Sbjct: 77 LYKDKEFGSMVLELNASDDRGIDIVRGPILSFASTRTI---FKKGFKLVILDEADAMTQD 133
Query: 157 AQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAE 216
AQ ALRRVIEK+T+NTRF LICN ++KIIPALQSRCTRFRF PL P + RL+HV++ E
Sbjct: 134 AQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVKEE 193
Query: 217 GLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYW 276
+D++E G+ ALV L +GDMR+ALNILQST+MA ++TEE VY CTG+PL DI I W
Sbjct: 194 KVDISEDGMKALVTLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKSDIANILDW 253
Query: 277 LLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLS 336
+LN+ F ++++ +K KGLAL DI+ E+ +FV ++ PS VR+ L+ +ADIEYRLS
Sbjct: 254 MLNQDFTTAYRK---LKTLKGLALHDILTEIHLFVHRVDFPSSVRIHLLTKMADIEYRLS 310
Query: 337 FGCNDKLQLGSIISTFTQARSAIVAAA 363
G ++K+QL S+I+ F R IVA A
Sbjct: 311 VGTSEKIQLSSLIAAFQVTRDLIVAEA 337
>gi|281344058|gb|EFB19642.1| hypothetical protein PANDA_008377 [Ailuropoda melanoleuca]
Length = 318
Score = 395 bits (1016), Expect = e-107, Method: Compositional matrix adjust.
Identities = 193/321 (60%), Positives = 245/321 (76%), Gaps = 4/321 (1%)
Query: 44 VEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLY-GAQ 102
VEKYRPQ+L D+ +H+DI+ TI + SE+RLPHLLLYGPPGTGKTSTILA A++LY +
Sbjct: 1 VEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKDKE 60
Query: 103 YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALR 162
+ +M+LELNASDDRGID+VR I FAST++ K KLV+LDEADAMT+DAQ ALR
Sbjct: 61 FGSMVLELNASDDRGIDIVRGPILSFASTRTI---FKKGFKLVILDEADAMTQDAQNALR 117
Query: 163 RVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTE 222
RVIEK+T+NTRF LICN ++KIIPALQSRCTRFRF PL P + RL+HVI+ E +D++E
Sbjct: 118 RVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVIKEEKVDLSE 177
Query: 223 GGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESF 282
G+ ALV L +GDMR+ALNILQST+MA ++TEE VY CTG+PL DI I W+LN+ F
Sbjct: 178 DGMKALVTLASGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKSDIANILDWMLNQDF 237
Query: 283 ADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDK 342
+++ I+E+K KGLAL DI+ E +FV ++ PS VRV L+ +ADIEYRLS G N+K
Sbjct: 238 TTAYRNITELKTLKGLALHDILTETHLFVHRVDFPSSVRVHLLTKMADIEYRLSVGTNEK 297
Query: 343 LQLGSIISTFTQARSAIVAAA 363
+QL S+I+ F R IV A
Sbjct: 298 IQLSSLIAAFQVTRDLIVTEA 318
>gi|426247312|ref|XP_004017430.1| PREDICTED: replication factor C subunit 5 isoform 1 [Ovis aries]
Length = 336
Score = 395 bits (1015), Expect = e-107, Method: Compositional matrix adjust.
Identities = 191/327 (58%), Positives = 248/327 (75%), Gaps = 7/327 (2%)
Query: 38 IKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARK 97
I+ PWVEKYRPQ+L D+ +H+DI+ TI + SE+RLPHLLLYGPPGTGKTSTILA A++
Sbjct: 16 IRNLPWVEKYRPQTLDDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQ 75
Query: 98 LY-GAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKD 156
LY ++ +M+LELNASDDRGID+VR I FAST++ K KLV+LDEADAMT+D
Sbjct: 76 LYKDKEFGSMVLELNASDDRGIDIVRGPILSFASTRTI---FKKGFKLVILDEADAMTQD 132
Query: 157 AQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAE 216
AQ ALRRVIEK+T+NTRF LICN ++KIIPALQSRCTRFRF PL P + RL+HV+E E
Sbjct: 133 AQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEE 192
Query: 217 GLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYW 276
+D++E G+ AL+ L +GDMR+ALNILQST+MA ++TEE VY CTG+PL DI I W
Sbjct: 193 KVDISEDGMKALITLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKSDIANILDW 252
Query: 277 LLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLS 336
+LN+ F ++++ +K KGLAL DI+ E+ +FV ++ PS VR+ L+ +ADIEYRLS
Sbjct: 253 MLNQDFTTAYRK---LKTLKGLALHDILTEIHLFVHRVDFPSSVRIHLLTKMADIEYRLS 309
Query: 337 FGCNDKLQLGSIISTFTQARSAIVAAA 363
G ++K+QL S+I+ F R IV A
Sbjct: 310 VGTSEKIQLSSLIAAFQVTRDLIVTEA 336
>gi|126324700|ref|XP_001375103.1| PREDICTED: replication factor C subunit 5 [Monodelphis domestica]
Length = 342
Score = 394 bits (1013), Expect = e-107, Method: Compositional matrix adjust.
Identities = 191/323 (59%), Positives = 247/323 (76%), Gaps = 4/323 (1%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLY-G 100
PWVEKYRPQ+L ++ +H+DI+ TI + SE+RLPHLLLYGPPGTGKTSTILA AR+LY
Sbjct: 23 PWVEKYRPQTLDELISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACARQLYKD 82
Query: 101 AQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFA 160
++++M+LELNASDDRGID+VR I FAST++ K KLV+LDEADAMT+DAQ A
Sbjct: 83 KEFNSMVLELNASDDRGIDIVRGPILSFASTRTI---FKKGFKLVILDEADAMTQDAQNA 139
Query: 161 LRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDV 220
LRRVIEK+T+NTRF LICN ++KIIPALQSRCTRFRF PL P + RL+HVI E +DV
Sbjct: 140 LRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVIAEEKVDV 199
Query: 221 TEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNE 280
+E G+ ALV L +GDMR+ALNILQST+MA ++TEE Y CTG+PL DI I W+LN+
Sbjct: 200 SEDGMKALVTLSSGDMRRALNILQSTNMAFGKVTEETAYTCTGHPLKADIANILDWMLNQ 259
Query: 281 SFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCN 340
F +++ I+E+K KGLAL DI+ E+ +FV ++ P VR+ L+ +ADIE+RL+ G +
Sbjct: 260 DFTSAYRNITELKTLKGLALHDILTEIHLFVHRVDFPPPVRIHLLIKMADIEHRLAVGTS 319
Query: 341 DKLQLGSIISTFTQARSAIVAAA 363
+K+QL S+I+ F R IVA A
Sbjct: 320 EKIQLSSLIAAFQVTRDLIVAEA 342
>gi|291407082|ref|XP_002719834.1| PREDICTED: replication factor C 5 [Oryctolagus cuniculus]
Length = 342
Score = 394 bits (1013), Expect = e-107, Method: Compositional matrix adjust.
Identities = 192/321 (59%), Positives = 245/321 (76%), Gaps = 4/321 (1%)
Query: 44 VEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLY-GAQ 102
VEKYRPQ+L D+ +HRDI+ TI + SE+RLPHLLLYGPPGTGKTSTILA A++LY +
Sbjct: 25 VEKYRPQTLNDLISHRDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKDKE 84
Query: 103 YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALR 162
+ +M+LELNASDDRGID+VR I FAST++ K KLV+LDEADAMT+DAQ ALR
Sbjct: 85 FGSMVLELNASDDRGIDIVRGPILSFASTRTI---FKKGFKLVILDEADAMTQDAQNALR 141
Query: 163 RVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTE 222
RVIEK+T+NTRF LICN ++KIIPALQSRCTRFRF PL P + RL+HV+E E + V+E
Sbjct: 142 RVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVYVSE 201
Query: 223 GGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESF 282
G+ AL+ L +GDMR+ALNILQST+MA ++TEE VY CTG+PL DI I W+LN+ F
Sbjct: 202 DGMKALITLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKSDIANILDWMLNQDF 261
Query: 283 ADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDK 342
+++ I E+K KGLAL DI+ E+ +FV ++ PS VR+ L+ +ADIEYRL+ G N+K
Sbjct: 262 TTAYRNIMELKTVKGLALHDILTEIHLFVHRVDFPSSVRIHLLTKMADIEYRLAVGTNEK 321
Query: 343 LQLGSIISTFTQARSAIVAAA 363
+QL S+I+ F R IVA A
Sbjct: 322 IQLSSLIAAFQVTRDLIVADA 342
>gi|58331833|ref|NP_001011112.1| replication factor C (activator 1) 5, 36.5kDa [Xenopus (Silurana)
tropicalis]
gi|54038730|gb|AAH84510.1| replication factor C (activator 1) 5 [Xenopus (Silurana)
tropicalis]
gi|89268121|emb|CAJ83540.1| replication factor C (activator 1) 5, 36.5kDa [Xenopus (Silurana)
tropicalis]
Length = 335
Score = 394 bits (1012), Expect = e-107, Method: Compositional matrix adjust.
Identities = 189/332 (56%), Positives = 250/332 (75%), Gaps = 4/332 (1%)
Query: 33 GTPPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTIL 92
G P + PWVEKYRPQ+L D+ +H+DI+ TI R SE++LPHLL YGPPGTGKTSTIL
Sbjct: 7 GQPGQSRNLPWVEKYRPQTLDDLISHQDILSTIQRFISEDKLPHLLFYGPPGTGKTSTIL 66
Query: 93 AVARKLY-GAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEAD 151
A A++LY ++++M+LELNASDDRGID+VR I FAST++ K KLV+LDEAD
Sbjct: 67 ACAKQLYKDREFNSMVLELNASDDRGIDIVRGPILSFASTRTI---FKKGFKLVILDEAD 123
Query: 152 AMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKH 211
AMT+DAQ ALRRVIEK+T+NTRF LICN ++KIIPALQSRCTRFRF PL P + RL+H
Sbjct: 124 AMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLSPEMMVPRLEH 183
Query: 212 VIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIE 271
V++ E +D++ G+ ALV L NGDMR++LNILQST+MA ++TE+ VY CTG+PL DI
Sbjct: 184 VVKEECVDISPDGMKALVTLSNGDMRRSLNILQSTNMAYGKVTEDTVYTCTGHPLRSDIA 243
Query: 272 QISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADI 331
I W+LN+ F ++K I E+K KGLAL DI+ EV ++V ++ P+ VR+ L+ +AD+
Sbjct: 244 NILDWMLNKDFTSAYKNIMELKTLKGLALHDILTEVHLYVHRVDFPASVRMHLLIKMADV 303
Query: 332 EYRLSFGCNDKLQLGSIISTFTQARSAIVAAA 363
EYRL+ G ++K+QL S+I+ F AR + A A
Sbjct: 304 EYRLASGTSEKIQLSSLIAAFQVARDMVAAEA 335
>gi|405974676|gb|EKC39302.1| Replication factor C subunit 5 [Crassostrea gigas]
Length = 336
Score = 394 bits (1012), Expect = e-107, Method: Compositional matrix adjust.
Identities = 186/320 (58%), Positives = 246/320 (76%), Gaps = 4/320 (1%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYG- 100
PWVEKYRP+ L ++ +H+DI+ TID+ E+RLPHLL YGPPGTGKTSTILAVA+++Y
Sbjct: 17 PWVEKYRPKQLDELISHKDIISTIDKFVKEDRLPHLLFYGPPGTGKTSTILAVAKQIYSP 76
Query: 101 AQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFA 160
++++M+LELNASDDRGI +VR QI FAST++ K+ K+V+LDEADAMT+DAQ A
Sbjct: 77 KEFNSMVLELNASDDRGIGIVRGQILSFASTRTI---FKSGYKIVILDEADAMTRDAQNA 133
Query: 161 LRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDV 220
LRRVIEK+T+NTRF +ICN ++KIIPALQSRCTRFRF PL + RL+HVI+ E +V
Sbjct: 134 LRRVIEKFTENTRFCIICNYLSKIIPALQSRCTRFRFGPLGTDQMVPRLQHVIQQEQCNV 193
Query: 221 TEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNE 280
TE G+ ALV L NGDMRKALNILQSTHMA + E+ VY C G+PL +DIE I W+LNE
Sbjct: 194 TEDGMKALVTLANGDMRKALNILQSTHMAHDVVNEDNVYTCVGHPLRRDIENIINWVLNE 253
Query: 281 SFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCN 340
+F ++ I EMK KGLAL DI+ EV +V ++ +P +V++ L++ +A++E+RL+ G N
Sbjct: 254 NFTSAYNNILEMKTEKGLALQDILTEVHTYVHRLDLPINVKIHLLDKMAEVEHRLASGTN 313
Query: 341 DKLQLGSIISTFTQARSAIV 360
+K+QL S+I+ F AR IV
Sbjct: 314 EKIQLSSLIAAFQVARDLIV 333
>gi|326429717|gb|EGD75287.1| replication factor C subunit 5 [Salpingoeca sp. ATCC 50818]
Length = 330
Score = 393 bits (1010), Expect = e-107, Method: Compositional matrix adjust.
Identities = 189/323 (58%), Positives = 244/323 (75%), Gaps = 5/323 (1%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP SL + +H++I+DTI R E RLPHLL YGPPGTGKTSTI A A++LYG
Sbjct: 11 PWVEKYRPDSLDQLVSHKEIIDTIQRFVDEKRLPHLLFYGPPGTGKTSTIKACAKQLYGK 70
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQS-FSFGVKASVKLVLLDEADAMTKDAQFA 160
Y +M+LELNASDDRGI VVR+QI+ FAST++ FS G K L++LDEADAMT DAQ A
Sbjct: 71 AYKSMVLELNASDDRGIGVVREQIKTFASTKTVFSAGFK----LIILDEADAMTNDAQAA 126
Query: 161 LRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDV 220
LRRVIEKYTK+TRF LICN V+KI PALQSRCTRFRFAPL H+ ++++ VI+AE ++
Sbjct: 127 LRRVIEKYTKHTRFCLICNYVSKISPALQSRCTRFRFAPLATEHMIQQVQRVIDAEHIET 186
Query: 221 TEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNE 280
T G+ ALV+L +GDMRKALNILQST MA ++ +E VYLCTG PLP DIE I +LNE
Sbjct: 187 TPAGIEALVKLASGDMRKALNILQSTFMAFNKVNDEGVYLCTGTPLPADIEAIVEVMLNE 246
Query: 281 SFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCN 340
SF +F++I E+K +GLAL DI+ +V F+ ++ +P+ R+ L++ LA IE RL++G N
Sbjct: 247 SFKTAFRKIMEIKTEQGLALQDILHDVHEFIHRLDIPTASRLLLLDRLAQIEERLAYGAN 306
Query: 341 DKLQLGSIISTFTQARSAIVAAA 363
++ QL ++ F R+ +V AA
Sbjct: 307 ERAQLADLVGVFQVVRNQVVEAA 329
>gi|148233376|ref|NP_001080677.1| replication factor C (activator 1) 5, 36.5kDa [Xenopus laevis]
gi|27882432|gb|AAH44712.1| Rfc5-prov protein [Xenopus laevis]
Length = 335
Score = 393 bits (1009), Expect = e-107, Method: Compositional matrix adjust.
Identities = 190/332 (57%), Positives = 250/332 (75%), Gaps = 4/332 (1%)
Query: 33 GTPPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTIL 92
G P + PWVEKYRPQ+L D+ +H+DI+ TI R SE++LPHLL YGPPGTGKTSTIL
Sbjct: 7 GQPVQSRNLPWVEKYRPQTLDDLISHQDILSTIQRFISEDKLPHLLFYGPPGTGKTSTIL 66
Query: 93 AVARKLY-GAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEAD 151
A A++LY ++++M+LELNASDDRGID+VR I FAST++ K KLV+LDEAD
Sbjct: 67 ACAKQLYKDREFNSMVLELNASDDRGIDIVRGPILSFASTRTI---FKKGFKLVILDEAD 123
Query: 152 AMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKH 211
AMT+DAQ ALRRVIEK+T+NTRF LICN ++KIIPALQSRCTRFRF PL + RL+H
Sbjct: 124 AMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLSSDMMIPRLEH 183
Query: 212 VIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIE 271
V++ E +D++ G+ ALV L NGDMR++LNILQST+MA ++TE+ VY CTG+PL DI
Sbjct: 184 VVKEERVDISPDGMKALVTLSNGDMRRSLNILQSTNMAYGKVTEDTVYTCTGHPLRSDIA 243
Query: 272 QISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADI 331
I W+LN+ F ++K I E+K KGLAL DI+ EV ++V ++ P+ VR+ L+ +ADI
Sbjct: 244 NILDWMLNKDFTSAYKNIMELKTLKGLALHDILTEVHLYVHRVNFPASVRMHLLVKMADI 303
Query: 332 EYRLSFGCNDKLQLGSIISTFTQARSAIVAAA 363
EYRL+ G ++K+QL S+I+ F AR +VA A
Sbjct: 304 EYRLASGTSEKIQLSSLIAAFQVARDMVVAEA 335
>gi|301114403|ref|XP_002998971.1| replication factor C subunit 5 [Phytophthora infestans T30-4]
gi|262111065|gb|EEY69117.1| replication factor C subunit 5 [Phytophthora infestans T30-4]
Length = 353
Score = 392 bits (1008), Expect = e-106, Method: Compositional matrix adjust.
Identities = 188/328 (57%), Positives = 246/328 (75%), Gaps = 9/328 (2%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP SL D+ AH++I+ T++RL +LPHLL YGPPGTGKTS I+A AR+LYG
Sbjct: 29 PWVEKYRPSSLDDLIAHQEIISTLNRLIDAQKLPHLLFYGPPGTGKTSMIIAAARRLYGK 88
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQS-FSFGVKASVKLVLLDEADAMTKDAQFA 160
Y +M+LELNASDDRGIDVVR QI++FA T+ FS GVK L++LDEAD+MT DAQF+
Sbjct: 89 NYGSMVLELNASDDRGIDVVRNQIKEFAGTKKLFSQGVK----LIILDEADSMTNDAQFS 144
Query: 161 LRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDV 220
LRRVIEKYTKN RF LICN V+KIIPALQSRCTRFRFAPL V+ R+KH+ + E L++
Sbjct: 145 LRRVIEKYTKNARFCLICNYVSKIIPALQSRCTRFRFAPLNESQVSGRVKHIAQLEKLNM 204
Query: 221 TEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNE 280
TE G A++RL GDMR+ LNILQ+T MA + E VYLCTGNPLPKDIE ++ WL NE
Sbjct: 205 TEDGFKAILRLGQGDMRRILNILQATSMAHDIVDEANVYLCTGNPLPKDIESVTQWLFNE 264
Query: 281 SFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCN 340
SF + ++ +EM+ KG A DI+++V + ++++P R+ L ++LA +E+RLS G
Sbjct: 265 SFTAAVRKCAEMQKLKGYATSDILQDVYRYTTELELPPRCRMYLYDELAKLEHRLSNGTT 324
Query: 341 DKLQLGSIISTFTQAR----SAIVAAAK 364
++LQL S+++ F AR +A+ AA+K
Sbjct: 325 EELQLASLVAIFAIARNQMSTAVAAASK 352
>gi|327276150|ref|XP_003222833.1| PREDICTED: replication factor C subunit 5-like [Anolis
carolinensis]
Length = 342
Score = 392 bits (1007), Expect = e-106, Method: Compositional matrix adjust.
Identities = 188/323 (58%), Positives = 245/323 (75%), Gaps = 4/323 (1%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLY-G 100
PWVEKYRPQ+L D+ +H+DI+ TI + SE+RLPHLL YGPPGTGKTSTILA A++LY
Sbjct: 23 PWVEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLFYGPPGTGKTSTILACAKQLYKD 82
Query: 101 AQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFA 160
++++M+LELNASDDRGI +VR I FAST++ K KLV+LDEADAMT++AQ A
Sbjct: 83 KEFNSMVLELNASDDRGIGIVRGPILSFASTRTI---FKKGFKLVILDEADAMTQEAQNA 139
Query: 161 LRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDV 220
LRRVIEK+T+NTRF LICN ++KIIPALQSRCTRFRF PL P + RLKHVIE+E +DV
Sbjct: 140 LRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLKHVIESEKVDV 199
Query: 221 TEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNE 280
++ G+ ALV L NGDMR++LNILQST+MA ++TEE VY CTG PL DI I W+LN+
Sbjct: 200 SDDGMKALVTLSNGDMRRSLNILQSTNMAFGKVTEETVYTCTGQPLKSDIANILDWMLNQ 259
Query: 281 SFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCN 340
F ++ I E+K KGLAL DI+ E+ +FV ++ P VR++L+ +ADIE+RL+ G +
Sbjct: 260 DFTAAYHNIMELKTLKGLALHDILTEIHLFVHRVDFPPSVRIQLLIKMADIEHRLAAGTS 319
Query: 341 DKLQLGSIISTFTQARSAIVAAA 363
+K+QLG+++ F R I A A
Sbjct: 320 EKIQLGALVGAFQVTRDLIAAEA 342
>gi|443900350|dbj|GAC77676.1| replication factor C, subunit RFC5 [Pseudozyma antarctica T-34]
Length = 342
Score = 392 bits (1006), Expect = e-106, Method: Compositional matrix adjust.
Identities = 187/319 (58%), Positives = 236/319 (73%), Gaps = 1/319 (0%)
Query: 32 SGTPPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTI 91
S PD PWVEKYRP +L D+ +H+DI TI +NRLPHLL YGPPGTGKTSTI
Sbjct: 14 SSAAPDQDLLPWVEKYRPVTLDDLVSHKDITSTIQNFIDKNRLPHLLFYGPPGTGKTSTI 73
Query: 92 LAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEAD 151
LA+ARK+YGAQ+ N +LELNASD+RGIDVVR+QI+ FAST+S FG KA KL++LDEAD
Sbjct: 74 LAMARKIYGAQFRNSVLELNASDERGIDVVREQIKSFASTKSV-FGAKAGFKLIVLDEAD 132
Query: 152 AMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKH 211
AMT+ AQ ALRRVIE+YTKN RF +ICN VNKIIPA+QSRCTRFRF PLEP V RL+H
Sbjct: 133 AMTQAAQGALRRVIEQYTKNVRFCIICNYVNKIIPAIQSRCTRFRFNPLEPDQVESRLQH 192
Query: 212 VIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIE 271
VIE+E ++T GG AL++L GDMR+ALN+LQ+ H AS I E AVY CTGNP P+DIE
Sbjct: 193 VIESEHCNITPGGKEALLKLSRGDMRRALNVLQACHAASDHIDETAVYNCTGNPHPEDIE 252
Query: 272 QISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADI 331
+ ++ + F +F I +K KG+AL D++ V + IK+P R+ L++ LAD
Sbjct: 253 AVLKSMMQDEFTTAFNTIVALKTAKGIALADMISGVYDLLASIKLPPKSRIYLLDHLADT 312
Query: 332 EYRLSFGCNDKLQLGSIIS 350
E+RLS G ++KLQL +++
Sbjct: 313 EHRLSTGGSEKLQLTALLG 331
>gi|255082558|ref|XP_002504265.1| predicted protein [Micromonas sp. RCC299]
gi|226519533|gb|ACO65523.1| predicted protein [Micromonas sp. RCC299]
Length = 355
Score = 391 bits (1005), Expect = e-106, Method: Compositional matrix adjust.
Identities = 188/325 (57%), Positives = 246/325 (75%), Gaps = 5/325 (1%)
Query: 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 102
WVEKYRP L+DVAAH+DI+DTI RLTS++RLP+LLLYGPPGTGKTSTILAVA++LYG Q
Sbjct: 33 WVEKYRPSKLSDVAAHKDIIDTIGRLTSQDRLPYLLLYGPPGTGKTSTILAVAKELYGPQ 92
Query: 103 YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALR 162
+ M LELNASDDRGIDVVR +I FAST FG A KL++LDE D+MTKDAQFALR
Sbjct: 93 FSQMTLELNASDDRGIDVVRNEISAFAST--MRFGSNAGFKLIILDECDSMTKDAQFALR 150
Query: 163 RVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTE 222
R+IEKYTK+TRF LI N V+K+IPALQSRCTRFRF+PL P V +R++ V+ E L +T+
Sbjct: 151 RIIEKYTKHTRFCLIGNYVSKVIPALQSRCTRFRFSPLGPNAVKDRVQFVVRQENLQITD 210
Query: 223 GGLAALVRLCNGDMRKALNILQSTHMASQQ---ITEEAVYLCTGNPLPKDIEQISYWLLN 279
+ A+ RL GDMR+ LNILQS+ ++ + I +VY TG P P+DIE I+ LLN
Sbjct: 211 DAIDAVTRLGAGDMRRTLNILQSSFLSKEGDGPIDANSVYATTGQPRPEDIEAIAGVLLN 270
Query: 280 ESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGC 339
+F ++ +++ +K +GLAL DIVR + +VF++ MP R L++D+AD+EYRL++
Sbjct: 271 SNFKEAVAKVAAIKQERGLALADIVRLLVEYVFRLHMPQLARANLVSDMADVEYRLAYVT 330
Query: 340 NDKLQLGSIISTFTQARSAIVAAAK 364
+++LQL +++ F AR AIVAAAK
Sbjct: 331 HERLQLMALVGAFANAREAIVAAAK 355
>gi|51467970|ref|NP_001003862.1| replication factor C subunit 5 [Danio rerio]
gi|49618977|gb|AAT68073.1| replication factor C subunit RFC5 [Danio rerio]
Length = 334
Score = 390 bits (1001), Expect = e-106, Method: Compositional matrix adjust.
Identities = 189/331 (57%), Positives = 245/331 (74%), Gaps = 4/331 (1%)
Query: 32 SGTPPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTI 91
S T P + PWVEKYRPQ+L D+ +H+DI+ TI + SE+RLPHLL YGPPGTGKTSTI
Sbjct: 5 SKTQPQARNLPWVEKYRPQTLDDLISHQDILSTIQKFISEDRLPHLLFYGPPGTGKTSTI 64
Query: 92 LAVARKLY-GAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEA 150
LA AR+LY ++++M+LELNASDDRGIDVVR I FAST++ K KLV+LDEA
Sbjct: 65 LACARQLYKDKEFNSMVLELNASDDRGIDVVRGPILSFASTRTI---FKKGFKLVILDEA 121
Query: 151 DAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLK 210
DAMT+DAQ ALRRVIEK+T+NTRF LICN ++KIIPALQSRCTRFRF PL + RL+
Sbjct: 122 DAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLSQNQMIPRLE 181
Query: 211 HVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDI 270
HVI+ E +D+T G+ A+V L GDMR++LNILQSTHMA ++TEE VY CTG+PL DI
Sbjct: 182 HVIQQESIDITPDGMKAIVTLSTGDMRRSLNILQSTHMAYGKVTEETVYTCTGHPLRSDI 241
Query: 271 EQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLAD 330
I W LN+ F ++ +I E+K KGLAL DI+ EV + + ++ P +R+ L+ LAD
Sbjct: 242 ANILDWALNKDFTTAYNQILELKTLKGLALHDILTEVHLLIHRVDFPPSIRMGLLIKLAD 301
Query: 331 IEYRLSFGCNDKLQLGSIISTFTQARSAIVA 361
IEYRL+ G ++K+QL S+++ F R +V+
Sbjct: 302 IEYRLASGTSEKIQLSSMVAAFQAVRDIVVS 332
>gi|303281602|ref|XP_003060093.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226458748|gb|EEH56045.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 332
Score = 390 bits (1001), Expect = e-106, Method: Compositional matrix adjust.
Identities = 191/334 (57%), Positives = 249/334 (74%), Gaps = 15/334 (4%)
Query: 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 102
WVEKYRP LADVAAH+DI+DTI RLT E++LPHLLLYGPPGTGKTSTILAVA++LYG
Sbjct: 2 WVEKYRPSRLADVAAHKDIIDTIGRLTKEDKLPHLLLYGPPGTGKTSTILAVAKELYGPA 61
Query: 103 YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALR 162
+ M LELNASDDRGIDVVR +IQ FAST F+ KL++LDE D+MTKDAQFALR
Sbjct: 62 FAQMTLELNASDDRGIDVVRNEIQSFASTMRFN---ATGFKLIILDECDSMTKDAQFALR 118
Query: 163 RVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTE 222
RVIEKYTK+TRF LI N V+KIIPALQSRCTRFRFAPL P V ER+KHV+ +EG+++TE
Sbjct: 119 RVIEKYTKHTRFCLIGNYVSKIIPALQSRCTRFRFAPLGPESVRERVKHVVASEGVEITE 178
Query: 223 GGLAALVRLCNGDMRKALNILQS---THMA---------SQQITEEAVYLCTGNPLPKDI 270
GLAA+ L GDMR+ LNILQ+ +H + + + +AVY TG P P D+
Sbjct: 179 EGLAAVQTLGAGDMRRTLNILQARSYSHWSPYDPVGEDPAAPLDADAVYATTGQPRPADV 238
Query: 271 EQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLAD 330
E I+ LLNE FA++ R+ E+K +GLAL D+ R + +VF++ MP R L++++AD
Sbjct: 239 EAIAGVLLNEPFAEAVARVEEIKTSRGLALGDVARLLCEYVFRLHMPPTARAALVSEMAD 298
Query: 331 IEYRLSFGCNDKLQLGSIISTFTQARSAIVAAAK 364
+E+RL++ ++++QL +++ F+ A+ AIV AA+
Sbjct: 299 VEHRLAYVTHERMQLLALVGAFSNAKEAIVNAAQ 332
>gi|291238303|ref|XP_002739068.1| PREDICTED: replication factor C 5-like [Saccoglossus kowalevskii]
Length = 331
Score = 389 bits (1000), Expect = e-106, Method: Compositional matrix adjust.
Identities = 187/328 (57%), Positives = 244/328 (74%), Gaps = 4/328 (1%)
Query: 37 DIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVAR 96
D + PWVEKYRP L ++ +H DI+ TIDR E+RLPHLL YGPPGTGKTSTILAVA+
Sbjct: 6 DNRNLPWVEKYRPNKLEELISHADILSTIDRFIKEDRLPHLLFYGPPGTGKTSTILAVAK 65
Query: 97 KLYG-AQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTK 155
+LY ++++M+LELNASDDRGI +VR + FAST++ K+ K+V+LDEADAMT
Sbjct: 66 QLYSPKEFNSMVLELNASDDRGIGIVRGPVLSFASTRTI---FKSGFKIVILDEADAMTN 122
Query: 156 DAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEA 215
DAQ ALRRVIEK+T+NTRF LICN ++KIIPA+QSRCTRFRF PL+ + RL+HVI+
Sbjct: 123 DAQNALRRVIEKFTENTRFCLICNYLSKIIPAIQSRCTRFRFGPLDNQQMVPRLEHVIQQ 182
Query: 216 EGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISY 275
E +DVTE G+ ALV L NGDMRK+LNILQST MA + E VY C G+PL +DI I
Sbjct: 183 ERVDVTEDGMNALVTLANGDMRKSLNILQSTSMAYDVVNEVNVYTCVGHPLKEDISNIVN 242
Query: 276 WLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRL 335
W+LNE F ++ I ++K KGLAL DI+ EV F+ K+++P+ VR++L++ +A+IEY L
Sbjct: 243 WMLNEDFTTAYNNILDLKTLKGLALQDILTEVHKFIHKVELPTKVRIKLLDKMAEIEYNL 302
Query: 336 SFGCNDKLQLGSIISTFTQARSAIVAAA 363
+ G N+K+QLGS+I+ F R IV A
Sbjct: 303 TAGTNEKIQLGSLIAAFQVTRDMIVMEA 330
>gi|63102390|gb|AAH95222.1| Rfc5 protein [Danio rerio]
gi|182889646|gb|AAI65456.1| Replication factor C (activator 1) 5 [Danio rerio]
Length = 334
Score = 389 bits (1000), Expect = e-106, Method: Compositional matrix adjust.
Identities = 189/331 (57%), Positives = 245/331 (74%), Gaps = 4/331 (1%)
Query: 32 SGTPPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTI 91
S T P + PWVEKYRPQ+L D+ +H+DI+ TI + SE+RLPHLL YGPPGTGKTSTI
Sbjct: 5 SKTQPQSRNLPWVEKYRPQTLDDLISHQDILSTIQKFISEDRLPHLLFYGPPGTGKTSTI 64
Query: 92 LAVARKLY-GAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEA 150
LA AR+LY ++++M+LELNASDDRGIDVVR I FAST++ K KLV+LDEA
Sbjct: 65 LACARQLYKDKEFNSMVLELNASDDRGIDVVRGPILSFASTRTI---FKKGFKLVILDEA 121
Query: 151 DAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLK 210
DAMT+DAQ ALRRVIEK+T+NTRF LICN ++KIIPALQSRCTRFRF PL + RL+
Sbjct: 122 DAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLSQNQMIPRLE 181
Query: 211 HVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDI 270
HVI+ E +D+T G+ A+V L GDMR++LNILQSTHMA ++TEE VY CTG+PL DI
Sbjct: 182 HVIQQESIDITPDGMKAIVTLSTGDMRRSLNILQSTHMAYGKVTEETVYTCTGHPLRSDI 241
Query: 271 EQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLAD 330
I W LN+ F ++ +I E+K KGLAL DI+ EV + + ++ P +R+ L+ LAD
Sbjct: 242 ANILDWALNKDFTTAYNQILELKTLKGLALHDILTEVHLLIRRVDFPPSIRMGLLIKLAD 301
Query: 331 IEYRLSFGCNDKLQLGSIISTFTQARSAIVA 361
IEYRL+ G ++K+QL S+++ F R +V+
Sbjct: 302 IEYRLASGTSEKIQLSSMVAAFQAVRDIVVS 332
>gi|23271821|gb|AAH23674.1| Rfc5 protein, partial [Mus musculus]
Length = 333
Score = 389 bits (998), Expect = e-105, Method: Compositional matrix adjust.
Identities = 189/316 (59%), Positives = 242/316 (76%), Gaps = 4/316 (1%)
Query: 49 PQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLY-GAQYHNMI 107
PQ+LAD+ +H+DI+ TI + SE+RLPHLLLYGPPGTGKTSTILA A++LY ++ +M+
Sbjct: 21 PQTLADLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKDKEFGSMV 80
Query: 108 LELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEK 167
LELNASDDRGID+VR I FAST++ K KLV+LDEADAMT+DAQ ALRRVIEK
Sbjct: 81 LELNASDDRGIDIVRGPILSFASTRTI---FKKGFKLVILDEADAMTQDAQNALRRVIEK 137
Query: 168 YTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAA 227
+T+NTRF LICN ++KIIPALQSRCTRFRF PL P + RL+HV++ E +D++E G+ A
Sbjct: 138 FTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVQEENVDISEDGMKA 197
Query: 228 LVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFK 287
LV L +GDMR+ALNILQST+MA ++TEE VY CTG+PL DI I W+LN+ F ++K
Sbjct: 198 LVTLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKTDIANILDWMLNQDFTTAYK 257
Query: 288 RISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDKLQLGS 347
I E+K KGLAL DI+ EV +FV ++ PS VR+ L+ +ADIEYRLS G ++K+QL S
Sbjct: 258 NIMELKTLKGLALHDILTEVHLFVHRVDFPSSVRIHLLTKMADIEYRLSVGTSEKIQLSS 317
Query: 348 IISTFTQARSAIVAAA 363
+I+ F R IVA A
Sbjct: 318 LIAAFQVTRDLIVAEA 333
>gi|410923359|ref|XP_003975149.1| PREDICTED: replication factor C subunit 5-like [Takifugu rubripes]
Length = 335
Score = 389 bits (998), Expect = e-105, Method: Compositional matrix adjust.
Identities = 187/333 (56%), Positives = 247/333 (74%), Gaps = 4/333 (1%)
Query: 32 SGTPPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTI 91
S TP + PWVEKYRPQ L D+ +HRDI+ TI + +E++LPHLL YGPPGTGKTSTI
Sbjct: 5 SKTPLQKRNLPWVEKYRPQKLDDLISHRDILSTIQKFINEDKLPHLLFYGPPGTGKTSTI 64
Query: 92 LAVARKLY-GAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEA 150
LA AR+LY ++++M+LELNASDDRGIDVVR I FAST++ K KLV+LDEA
Sbjct: 65 LACARQLYKDKEFNSMVLELNASDDRGIDVVRGPILSFASTRTI---FKKGFKLVILDEA 121
Query: 151 DAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLK 210
DAMT+DAQ ALRRVIEK+T+NTRF LICN ++KIIPALQSRCTRFRF PL P + RL+
Sbjct: 122 DAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLSPDQMIPRLE 181
Query: 211 HVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDI 270
HVI+ E +D+T G+ A+V L +GDMR++LNILQST MA +++TEE Y CTG+PL DI
Sbjct: 182 HVIQQESIDITPDGMKAIVTLSSGDMRRSLNILQSTSMAYEKVTEETAYNCTGHPLRSDI 241
Query: 271 EQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLAD 330
I W LN+ F ++K+I E+K KGLAL DI+ EV + + ++ P D+R+ L+ LAD
Sbjct: 242 ANILDWALNKDFTTAYKQILELKTLKGLALQDILTEVHLLIHRVDFPPDIRIGLLIKLAD 301
Query: 331 IEYRLSFGCNDKLQLGSIISTFTQARSAIVAAA 363
+E+RL+ G ++K+QL S+++ F R + + A
Sbjct: 302 VEHRLASGTDEKIQLSSMVAAFQAVRDFVASEA 334
>gi|443714846|gb|ELU07083.1| hypothetical protein CAPTEDRAFT_164264 [Capitella teleta]
Length = 333
Score = 388 bits (997), Expect = e-105, Method: Compositional matrix adjust.
Identities = 184/323 (56%), Positives = 241/323 (74%), Gaps = 4/323 (1%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYG- 100
PWVEKYRPQ L D+ +H+DI+ TI R E RLPHLL YGPPGTGKT+TILAVA+++Y
Sbjct: 13 PWVEKYRPQKLDDLISHKDIISTIGRFVKEERLPHLLFYGPPGTGKTTTILAVAKQIYAP 72
Query: 101 AQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFA 160
++++M+LELNASDDRGI +VR +I FAST++ K+ KLV+LDEADAMT DAQ A
Sbjct: 73 KEFNSMVLELNASDDRGIGIVRDRILSFASTRTL---FKSGFKLVILDEADAMTNDAQNA 129
Query: 161 LRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDV 220
LRRVIEK+T+NTRF +ICN ++KIIPALQSRCTRFRF PL P + RL++VIE E L V
Sbjct: 130 LRRVIEKFTENTRFCIICNYLSKIIPALQSRCTRFRFGPLLPEQMKPRLQYVIEQEKLTV 189
Query: 221 TEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNE 280
+E G+ ALV L NGDMR++LNILQS MA ++TE VY C G+PL DIE I W+LNE
Sbjct: 190 SEDGMDALVTLANGDMRRSLNILQSCSMAFDEVTEHTVYTCVGHPLRSDIEHIVKWMLNE 249
Query: 281 SFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCN 340
SF +++K I EM+ KGLAL D++ EV +V +I P +VR+ L+ +AD+E+RL+ G +
Sbjct: 250 SFTEAYKNILEMQTAKGLALNDVLTEVHHYVHRIDFPMNVRIHLLEKMADVEHRLASGTS 309
Query: 341 DKLQLGSIISTFTQARSAIVAAA 363
+ +QL S+++ F AR + A
Sbjct: 310 ESIQLSSLVAAFQVARDLVAQEA 332
>gi|198413770|ref|XP_002129710.1| PREDICTED: similar to replication factor C (activator 1) 5 (36.5
kDa) [Ciona intestinalis]
Length = 327
Score = 387 bits (995), Expect = e-105, Method: Compositional matrix adjust.
Identities = 186/332 (56%), Positives = 246/332 (74%), Gaps = 7/332 (2%)
Query: 31 VSGTPPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTST 90
+S + P++ PWVEKYRP+SL D+ +H DI+ TI ++NRLPHLL YGPPGTGKTST
Sbjct: 1 MSKSTPNL---PWVEKYRPESLDDLISHEDILSTISGFLAQNRLPHLLFYGPPGTGKTST 57
Query: 91 ILAVARKLYGA-QYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDE 149
ILA ARKLY Q+++M+LELNASDDRGI VVR QI FAST++ KL++LDE
Sbjct: 58 ILACARKLYSTTQFNSMVLELNASDDRGIGVVRNQILSFASTRTI---FNKGFKLIILDE 114
Query: 150 ADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERL 209
ADAMTKDAQ ALRRV+EK+ +NTRF LICN + KIIPA+QSRCTRFRF PL ++ RL
Sbjct: 115 ADAMTKDAQNALRRVMEKFMENTRFCLICNYLTKIIPAIQSRCTRFRFGPLTTDKISSRL 174
Query: 210 KHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKD 269
+++I+ E L+VTE GL ALV L NGDMRKALNILQS+ MA ++ E+ VY CTG P D
Sbjct: 175 EYIIKVEQLNVTEDGLNALVTLANGDMRKALNILQSSSMAYNEVDEDGVYKCTGRPRRDD 234
Query: 270 IEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLA 329
I++I W+LNE + +++ I E+ M +AL DI+ ++ +FV ++ P VR+ L++ LA
Sbjct: 235 IKKIMKWMLNEDYTTAYRSIMELNMTTSMALQDIIEQIHLFVHEVHFPVAVRIYLLDKLA 294
Query: 330 DIEYRLSFGCNDKLQLGSIISTFTQARSAIVA 361
DIE+RL+ G ++KLQLGS++S F AR+ + A
Sbjct: 295 DIEHRLASGTSEKLQLGSLVSAFQHARNIVAA 326
>gi|47221499|emb|CAG08161.1| unnamed protein product [Tetraodon nigroviridis]
Length = 335
Score = 387 bits (994), Expect = e-105, Method: Compositional matrix adjust.
Identities = 186/330 (56%), Positives = 246/330 (74%), Gaps = 4/330 (1%)
Query: 35 PPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAV 94
P + PWVEKYRPQ L D+ +H+DI+ TI R SE++LPHLL YGPPGTGKTSTILA
Sbjct: 8 PLQTRNLPWVEKYRPQKLDDLISHKDILSTIQRFISEDKLPHLLFYGPPGTGKTSTILAC 67
Query: 95 ARKLY-GAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAM 153
AR+LY ++++M+LELNASDDRGIDVVR I FAST++ K KLV+LDEADAM
Sbjct: 68 ARQLYRDKEFNSMVLELNASDDRGIDVVRGPILSFASTRTI---FKKGFKLVILDEADAM 124
Query: 154 TKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVI 213
T+DAQ ALRRVIEK+T+NTRF LICN ++KIIPALQSRCTRFRF PL P + RL+HVI
Sbjct: 125 TQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLSPDQMVPRLEHVI 184
Query: 214 EAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQI 273
+ E +DVT G+ A+V L +GDMR++LNILQST MA ++TE+ VY CTG+PL DI I
Sbjct: 185 QQESIDVTPDGMKAIVTLSSGDMRRSLNILQSTSMAYGKVTEDTVYTCTGHPLRSDIANI 244
Query: 274 SYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEY 333
W LN+ F ++++I E+K KGLAL DI+ EV + + ++ P ++R+ L+ LAD+E+
Sbjct: 245 LDWALNKDFTTAYRQILELKTLKGLALHDILTEVHLLIHRVDFPPNIRIGLLIKLADVEH 304
Query: 334 RLSFGCNDKLQLGSIISTFTQARSAIVAAA 363
RL+ G ++K+QL S+++ F R +V+ A
Sbjct: 305 RLASGTDEKIQLSSMVAAFQAVRDLVVSEA 334
>gi|147902441|ref|NP_001085526.1| MGC80325 protein [Xenopus laevis]
gi|49117945|gb|AAH72889.1| MGC80325 protein [Xenopus laevis]
Length = 335
Score = 387 bits (993), Expect = e-105, Method: Compositional matrix adjust.
Identities = 184/323 (56%), Positives = 246/323 (76%), Gaps = 4/323 (1%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLY-G 100
PWVEKYRPQ+L ++ +H+DI+ TI R SE++LPHLL YGPPGTGKTSTILA A++LY
Sbjct: 16 PWVEKYRPQTLDELISHQDILSTIQRFISEDKLPHLLFYGPPGTGKTSTILACAKQLYKD 75
Query: 101 AQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFA 160
++++M+LELNASDDRGID+VR + FAST++ K KLV+LDEADAMT+DAQ A
Sbjct: 76 REFNSMVLELNASDDRGIDIVRGPVLSFASTRTI---FKKGFKLVILDEADAMTQDAQNA 132
Query: 161 LRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDV 220
LRRVIEK+T+NTRF LICN ++KIIPALQSRCTRFRF PL + RL+HV++ E +D+
Sbjct: 133 LRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLSSEMMIPRLEHVVKEEHVDI 192
Query: 221 TEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNE 280
+ G+ ALV L NGDMR++LNILQST+MA ++TE+ VY CTG+PL DI I W+LN+
Sbjct: 193 SPDGMKALVTLSNGDMRRSLNILQSTNMAYSKVTEDTVYTCTGHPLRSDIANILDWMLNK 252
Query: 281 SFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCN 340
F ++K I E+K KGLAL DI+ E+ ++V ++ P+ VR+ L+ +ADIEYRL+ G +
Sbjct: 253 DFTSAYKNIMELKTLKGLALHDILTEIHLYVHRVDFPALVRIHLLVKMADIEYRLASGTS 312
Query: 341 DKLQLGSIISTFTQARSAIVAAA 363
+K+QL S+I+ F AR + A A
Sbjct: 313 EKIQLSSMIAAFQVARDMVAAEA 335
>gi|328774020|gb|EGF84057.1| hypothetical protein BATDEDRAFT_84775 [Batrachochytrium
dendrobatidis JAM81]
Length = 358
Score = 386 bits (991), Expect = e-105, Method: Compositional matrix adjust.
Identities = 184/344 (53%), Positives = 246/344 (71%), Gaps = 7/344 (2%)
Query: 10 MDFDEDENQNLKPKDNGKNVIVSGTPPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLT 69
M D+D + K+ GK V+ + D + PWVEKYRP L ++ +H+DI+ TI R
Sbjct: 7 MIVDDDVSVIQVSKNKGKAVVYDESVVD--SLPWVEKYRPSRLDELISHKDIISTIVRFI 64
Query: 70 SENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFA 129
EN+LPH+L YGPPGTGKTSTILA ARKLYG ++ +MILELNASDDRGIDVVR+QI++FA
Sbjct: 65 DENKLPHMLFYGPPGTGKTSTILACARKLYGDKFRSMILELNASDDRGIDVVREQIKNFA 124
Query: 130 STQS-FSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPAL 188
ST+ FS G K L++LDEADAMT+ AQ ALRRVIE+YTKN RF LICN V KIIPAL
Sbjct: 125 STRKLFSSGFK----LIILDEADAMTQAAQNALRRVIEQYTKNVRFCLICNYVGKIIPAL 180
Query: 189 QSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHM 248
QSRCTRFRFAPLE +++R+ H+I EG+++T+ G A+++L GDMR+ALNILQ+ H
Sbjct: 181 QSRCTRFRFAPLEEAQISDRITHIINQEGINITQAGRQAVLKLSQGDMRRALNILQAVHT 240
Query: 249 ASQQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVT 308
+ TEE +Y CTG+P P DI+QI WL N + + K + +K KGLAL D++ +
Sbjct: 241 GYPEATEETIYACTGSPCPADIDQIVAWLFNMDYTTALKSVKLLKHEKGLALADLLSGLV 300
Query: 309 MFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDKLQLGSIISTF 352
+ + +++P R+ LM LADIEY + GC++ +QLG+++ F
Sbjct: 301 VSLAGLELPKVSRIFLMEKLADIEYNIGVGCSEDIQLGAMVGAF 344
>gi|299116532|emb|CBN74720.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 382
Score = 386 bits (991), Expect = e-104, Method: Compositional matrix adjust.
Identities = 185/323 (57%), Positives = 242/323 (74%), Gaps = 5/323 (1%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP SL ++ AH DIV + +L + N+LPHLL YGPPGTGKTSTILA A+KLYGA
Sbjct: 64 PWVEKYRPSSLEELVAHEDIVGILQKLIASNKLPHLLFYGPPGTGKTSTILACAKKLYGA 123
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQS-FSFGVKASVKLVLLDEADAMTKDAQFA 160
+ M+LELNASDDRGIDVVR QI++FA T+ FS GVK LV+LDEADAMT DAQFA
Sbjct: 124 DFKMMVLELNASDDRGIDVVRGQIKEFAGTKRLFSSGVK----LVILDEADAMTNDAQFA 179
Query: 161 LRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDV 220
LRRVIEKYTK+TRF +ICN VNKIIPALQSRCT+FRFAPL+P + RL+HV++ E + +
Sbjct: 180 LRRVIEKYTKHTRFCMICNYVNKIIPALQSRCTKFRFAPLKPEQIQGRLQHVVDQEKVTI 239
Query: 221 TEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNE 280
T G+ A++RL GDMR+ LN+LQSTHMA Q++ E YLC PL +D+E I LL
Sbjct: 240 TPDGVEAVMRLGQGDMRRVLNLLQSTHMAYQKVDERHAYLCAAAPLKEDMEYIRNALLTA 299
Query: 281 SFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCN 340
SF D+F I ++ KG +L DIV+E+ + V +I++P+ V V L++++++ E RL+ G +
Sbjct: 300 SFKDAFDGILKLTTAKGYSLGDIVQELALKVMEIELPAAVMVHLLDEMSNTEERLAHGGS 359
Query: 341 DKLQLGSIISTFTQARSAIVAAA 363
++LQLGS++ F AR + A+
Sbjct: 360 ERLQLGSLVGAFATARHMMSPAS 382
>gi|348533450|ref|XP_003454218.1| PREDICTED: replication factor C subunit 5-like [Oreochromis
niloticus]
Length = 335
Score = 385 bits (990), Expect = e-104, Method: Compositional matrix adjust.
Identities = 186/333 (55%), Positives = 244/333 (73%), Gaps = 4/333 (1%)
Query: 32 SGTPPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTI 91
S P + PWVEKYRPQ+L D+ +H+DI+ TI R SE++LPHLL YGPPGTGKTSTI
Sbjct: 5 SKAPLQTRNLPWVEKYRPQTLDDLISHKDILSTIQRFISEDKLPHLLFYGPPGTGKTSTI 64
Query: 92 LAVARKLYG-AQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEA 150
LA AR+LY ++++M+LELNASDDRGIDVVR I FAST++ K KLV+LDEA
Sbjct: 65 LACARQLYKEKEFNSMVLELNASDDRGIDVVRGPILSFASTRTI---FKKGFKLVILDEA 121
Query: 151 DAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLK 210
DAMT+DAQ ALRRVIEK+T+NTRF LICN ++KIIPALQSRCTRFRF PL P + RL+
Sbjct: 122 DAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLSPDQMIPRLE 181
Query: 211 HVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDI 270
HVI+ E +D+T G+ +V L GDMR++LNILQST MA ++TE+ VY CTG+PL DI
Sbjct: 182 HVIQQENIDITPDGMKGIVTLSTGDMRRSLNILQSTSMAYGKVTEDTVYTCTGHPLRSDI 241
Query: 271 EQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLAD 330
I W LN+ F ++ +I E+K KGLAL DI+ EV + V ++ P +R+ L+ LAD
Sbjct: 242 ANILDWCLNKDFTSAYNQILELKTLKGLALHDILTEVHLLVHRVDFPPAIRISLLIKLAD 301
Query: 331 IEYRLSFGCNDKLQLGSIISTFTQARSAIVAAA 363
+E+RL+ G ++K+QL S+++ F R +V+ A
Sbjct: 302 VEHRLASGTSEKIQLSSMVAAFQAVRELVVSEA 334
>gi|355716188|gb|AES05532.1| replication factor C 5, 36.5kDa [Mustela putorius furo]
Length = 337
Score = 384 bits (986), Expect = e-104, Method: Compositional matrix adjust.
Identities = 186/304 (61%), Positives = 235/304 (77%), Gaps = 4/304 (1%)
Query: 38 IKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARK 97
I+ PWVEKYRPQ+L D+ +H+DI+ TI + SE+RLPHLLLYGPPGTGKTSTILA A++
Sbjct: 37 IRNLPWVEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQ 96
Query: 98 LY-GAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKD 156
LY ++ +M+LELNASDDRGI++VR I FAST++ K KLV+LDEADAMT+D
Sbjct: 97 LYKDKEFGSMVLELNASDDRGIEIVRGPILSFASTRTI---FKKGFKLVILDEADAMTQD 153
Query: 157 AQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAE 216
AQ ALRRVIEK+T+NTRF LICN ++KIIPALQSRCTRFRF PL P + RL+HVIE E
Sbjct: 154 AQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVIEEE 213
Query: 217 GLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYW 276
+D++E G+ ALV L +GDMR+ALNILQST+MA ++TEE VY CTG+PL DI I W
Sbjct: 214 KVDLSEDGMKALVTLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKSDIANILDW 273
Query: 277 LLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLS 336
+LN+ F +++ I E+K KGLAL DI+ E+ +FV ++ PS VRV L+ +ADIEYRLS
Sbjct: 274 MLNQDFTTAYRNIMELKTLKGLALHDILTEIHLFVHRVDFPSSVRVHLLAKMADIEYRLS 333
Query: 337 FGCN 340
G N
Sbjct: 334 VGTN 337
>gi|71021079|ref|XP_760770.1| hypothetical protein UM04623.1 [Ustilago maydis 521]
gi|46100247|gb|EAK85480.1| hypothetical protein UM04623.1 [Ustilago maydis 521]
Length = 341
Score = 382 bits (981), Expect = e-103, Method: Compositional matrix adjust.
Identities = 184/331 (55%), Positives = 238/331 (71%), Gaps = 1/331 (0%)
Query: 20 LKPKDNGKNVIVSGTPPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLL 79
+ K GK + T + PWVEKYRP +L D+ +H+DI TI +NRLPHLL
Sbjct: 1 MTSKGKGKADDATATDQQLDLLPWVEKYRPATLDDLVSHKDITSTIQNFIDKNRLPHLLF 60
Query: 80 YGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVK 139
YGPPGTGKTSTILA+ARK++G Q+ N +LELNASDDRGIDVVR+QI+ FAST+S F K
Sbjct: 61 YGPPGTGKTSTILAMARKIFGPQFRNSVLELNASDDRGIDVVREQIKSFASTKSV-FSSK 119
Query: 140 ASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAP 199
KL++LDEADAMT+ AQ ALRRVIE+YTKN RF +ICN VNKIIPA+QSRCTRFRF P
Sbjct: 120 GGFKLIVLDEADAMTQAAQGALRRVIEQYTKNVRFCIICNYVNKIIPAIQSRCTRFRFNP 179
Query: 200 LEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVY 259
LE V +RL HVIE+EG ++T+ G AL++L GDMR+ALN+LQ+ H AS I E AVY
Sbjct: 180 LELDQVEDRLNHVIESEGCNITQDGKEALLKLSRGDMRRALNVLQACHAASDHIDETAVY 239
Query: 260 LCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSD 319
CTGNP P DIE I ++ + F +F +S++K KG+AL DI+ + IK+P+
Sbjct: 240 NCTGNPHPHDIEAILKSMMEDEFTTAFWTVSQLKTAKGIALADIITGFYDLLTTIKLPAK 299
Query: 320 VRVRLMNDLADIEYRLSFGCNDKLQLGSIIS 350
R+ L++ LAD E+RLS G ++K+QL +++
Sbjct: 300 SRIYLLDHLADTEHRLSTGGSEKIQLTALLG 330
>gi|321458433|gb|EFX69502.1| hypothetical protein DAPPUDRAFT_202808 [Daphnia pulex]
Length = 330
Score = 382 bits (981), Expect = e-103, Method: Compositional matrix adjust.
Identities = 180/319 (56%), Positives = 238/319 (74%), Gaps = 4/319 (1%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP+ L D+ +H+DI+ TI + +ENRLPHLL YGPPGTGKTSTILA A++LY
Sbjct: 8 PWVEKYRPKQLDDLISHQDIISTIRKFINENRLPHLLFYGPPGTGKTSTILACAKELYTP 67
Query: 102 Q-YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFA 160
Q +++M+LELNASDDRGI+VVR QI FAST+S K+ KL++LDEADAMT DAQ A
Sbjct: 68 QQFNSMVLELNASDDRGINVVRNQIMSFASTRSI---FKSGFKLIILDEADAMTNDAQNA 124
Query: 161 LRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDV 220
LRRVIEK+T+N RF LICN ++KIIPA+QSRCTRFRF PL+ + R+ +VIE E + V
Sbjct: 125 LRRVIEKFTENVRFCLICNYMSKIIPAIQSRCTRFRFGPLKSDQILPRMNYVIEEEKIKV 184
Query: 221 TEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNE 280
TE G AL+ L +GDMR+ +NILQST MA ++ E+ VY C G+PL DI + W+LNE
Sbjct: 185 TEDGRQALLSLAHGDMRRVINILQSTSMAFDEVNEDHVYTCVGHPLKSDIANVVSWMLNE 244
Query: 281 SFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCN 340
++ +I +++ KGLAL DI+ E ++V KI+ P +VRV L+ +AD+EYRLS GC+
Sbjct: 245 DLTSAYSKIRDLQTFKGLALQDILTETHLYVHKIEFPPNVRVFLLEKMADVEYRLSAGCS 304
Query: 341 DKLQLGSIISTFTQARSAI 359
+KLQLGS+++ F + I
Sbjct: 305 EKLQLGSLLAAFDSIKYLI 323
>gi|343425514|emb|CBQ69049.1| probable RFC3-DNA replication factor C, 40 kDa subunit [Sporisorium
reilianum SRZ2]
Length = 342
Score = 380 bits (975), Expect = e-103, Method: Compositional matrix adjust.
Identities = 177/309 (57%), Positives = 232/309 (75%), Gaps = 1/309 (0%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP +L D+ +H+DI TI +NRLPHLL YGPPGTGKTSTILA+ARK++G
Sbjct: 24 PWVEKYRPATLDDLVSHKDITSTIQNFIDKNRLPHLLFYGPPGTGKTSTILAMARKIFGP 83
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFAL 161
Q+ N +LELNASDDRGI+VVR+QI+ FAST+S F K KL++LDEADAMT+ AQ AL
Sbjct: 84 QFRNSVLELNASDDRGIEVVREQIKSFASTKSV-FSSKGGFKLIVLDEADAMTQAAQGAL 142
Query: 162 RRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVT 221
RRVIE+YTKN RF +ICN VNKIIPA+QSRCTRFRF PLE V +RL HVI+ EG +T
Sbjct: 143 RRVIEQYTKNVRFCIICNYVNKIIPAIQSRCTRFRFNPLELDQVEDRLNHVIDTEGCKIT 202
Query: 222 EGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNES 281
+ G AL++L GDMR+ALN+LQ+ H AS I E AVY CTGNP P+D+E + ++ +
Sbjct: 203 QDGKEALLKLSRGDMRRALNVLQACHAASDNIDETAVYNCTGNPHPQDVEAVLKSMMEDE 262
Query: 282 FADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCND 341
F +F+ +SE+K KG+AL D++ V + IK+P+ R+ L++ LAD E+RLS G ++
Sbjct: 263 FTTAFRTVSELKTAKGIALADMISGVYDLLATIKLPAKSRIYLLDHLADTEHRLSTGGSE 322
Query: 342 KLQLGSIIS 350
K+QL +++
Sbjct: 323 KIQLTALLG 331
>gi|158292645|ref|XP_314028.3| AGAP005144-PA [Anopheles gambiae str. PEST]
gi|157017089|gb|EAA09454.3| AGAP005144-PA [Anopheles gambiae str. PEST]
Length = 327
Score = 379 bits (972), Expect = e-102, Method: Compositional matrix adjust.
Identities = 182/321 (56%), Positives = 243/321 (75%), Gaps = 5/321 (1%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP L D+ +H +I+ TI++ E +LPHLL YGPPGTGKTSTILA AR+LY
Sbjct: 10 PWVEKYRPAKLNDLISHEEIIGTINKFIKEEQLPHLLFYGPPGTGKTSTILACARQLYKP 69
Query: 102 Q-YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFA 160
Q + +M+LELNASDDRGI++VR QI DFAST++ K KL++LDEADAMT DAQ A
Sbjct: 70 QSFGSMVLELNASDDRGINIVRGQILDFASTRTI---FKGGYKLIILDEADAMTNDAQNA 126
Query: 161 LRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDV 220
LRR+IEKYT+N RF +ICN ++KIIPA+QSRCTRFRFAPL P + RL+HV+EAEG+DV
Sbjct: 127 LRRIIEKYTENVRFCIICNYLSKIIPAIQSRCTRFRFAPLSPDQILPRLEHVVEAEGIDV 186
Query: 221 TEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLN- 279
T+ G AL+ L GDMRK LN+LQST MA +++TE VY C G+PL +DI I +WLLN
Sbjct: 187 TDDGKKALMTLAGGDMRKVLNVLQSTWMAYKKVTEVNVYNCVGHPLKEDINNIIFWLLNE 246
Query: 280 ESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGC 339
ESF +++I ++K +KGLAL DI+ E+ + V ++++P V +L+ +LA IE RL+ GC
Sbjct: 247 ESFKACYEKIQQLKTQKGLALEDILTEIHLVVNRLEIPPRVSSQLLINLASIEERLADGC 306
Query: 340 NDKLQLGSIISTFTQARSAIV 360
+K Q+ ++I+ F++ RS +V
Sbjct: 307 VEKPQITALIAAFSKVRSVVV 327
>gi|332023241|gb|EGI63497.1| Replication factor C subunit 5 [Acromyrmex echinatior]
Length = 327
Score = 379 bits (972), Expect = e-102, Method: Compositional matrix adjust.
Identities = 186/316 (58%), Positives = 230/316 (72%), Gaps = 4/316 (1%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYG- 100
PWVEKYRP+SL ++ +H I+ TI++ EN+LPHLLLYGPPGTGKTSTILA ARKLY
Sbjct: 11 PWVEKYRPKSLDELISHETIIKTINKYIDENQLPHLLLYGPPGTGKTSTILACARKLYTP 70
Query: 101 AQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFA 160
AQ+++M+LELNASDDRGI +VR QI FAST + K++ KL++LDEADAMT DAQ A
Sbjct: 71 AQFNSMVLELNASDDRGIGIVRGQILSFASTGTM---YKSAFKLIILDEADAMTIDAQNA 127
Query: 161 LRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDV 220
LRR+IEKYT N RF +ICN ++KIIPALQSRCTRFRF PL + RL HVIEAE L V
Sbjct: 128 LRRIIEKYTDNVRFCIICNYLSKIIPALQSRCTRFRFLPLAAEQIIPRLNHVIEAENLKV 187
Query: 221 TEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNE 280
TE G AL+ L GDMRK +++LQST A + EE VY C G+PLP+DI I WLLNE
Sbjct: 188 TEDGKQALITLSGGDMRKVISVLQSTWFAYGAVNEENVYNCVGHPLPRDITSIVNWLLNE 247
Query: 281 SFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCN 340
S+ +K+I E+K+ KGLAL DI+ EV +V KI P + L+ +A+IE RL+ GC
Sbjct: 248 SYDTCYKKIQELKLNKGLALQDILTEVHSYVIKIDFPDQLFTDLLCKMAEIEKRLASGCR 307
Query: 341 DKLQLGSIISTFTQAR 356
D +QL S+IS F R
Sbjct: 308 DNIQLNSLISAFYSVR 323
>gi|156384148|ref|XP_001633193.1| predicted protein [Nematostella vectensis]
gi|156220260|gb|EDO41130.1| predicted protein [Nematostella vectensis]
Length = 329
Score = 379 bits (972), Expect = e-102, Method: Compositional matrix adjust.
Identities = 184/326 (56%), Positives = 240/326 (73%), Gaps = 4/326 (1%)
Query: 37 DIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVAR 96
D + PWVEKYRP+ L D+ +H DI++TI R +E RLPHLL YGPPGTGKTSTILAVA+
Sbjct: 7 DKRNLPWVEKYRPKCLDDLISHTDIINTIQRFINEERLPHLLFYGPPGTGKTSTILAVAK 66
Query: 97 KLY-GAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTK 155
+LY Q+ +M+LELNASDDRGI +VR I FAST++ K+ KLV+LDEADAMT+
Sbjct: 67 QLYPDKQFGSMVLELNASDDRGIGIVRGDILSFASTRTI---FKSGFKLVILDEADAMTQ 123
Query: 156 DAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEA 215
DAQ ALRRV+EK+T+NTRF LICN + KIIPALQSRCTRFRF PL + RL+HVIE+
Sbjct: 124 DAQNALRRVMEKFTENTRFCLICNYLTKIIPALQSRCTRFRFGPLSVDQMLPRLEHVIES 183
Query: 216 EGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISY 275
E ++VT+ G +L+RL GDMRK LNILQST MA + E+ VYLCTG P P DI I
Sbjct: 184 ERVNVTDDGRKSLLRLAQGDMRKVLNILQSTSMAYSVVNEDHVYLCTGQPQPTDIGNIVD 243
Query: 276 WLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRL 335
W+LN+ F ++ I ++K KGLAL DI+ E +V ++ P+ +R+ L++ +A++EYRL
Sbjct: 244 WMLNKDFTTAYTNILKLKTLKGLALQDILEETHSYVHRVDFPAKIRIHLLDKMAEVEYRL 303
Query: 336 SFGCNDKLQLGSIISTFTQARSAIVA 361
+ G ++K+QLGS+I+ F AR I A
Sbjct: 304 ASGTSEKIQLGSMIAAFQVARDMIEA 329
>gi|340377781|ref|XP_003387407.1| PREDICTED: replication factor C subunit 5-like [Amphimedon
queenslandica]
Length = 332
Score = 377 bits (969), Expect = e-102, Method: Compositional matrix adjust.
Identities = 175/324 (54%), Positives = 242/324 (74%), Gaps = 4/324 (1%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYG- 100
PWVEKYRP++L D+ +H++I++TI E+RLPHLL YGPPGTGKTSTILA A+ ++
Sbjct: 6 PWVEKYRPKNLDDLISHKEIINTIQHFLKEDRLPHLLFYGPPGTGKTSTILACAKTIFSP 65
Query: 101 AQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFA 160
A+ +M+LELNASDDRGIDVVR IQ FAST+S ++ KL++LDEADAMTKDAQ A
Sbjct: 66 AEIKSMVLELNASDDRGIDVVRGPIQSFASTRSI---FRSGFKLIILDEADAMTKDAQNA 122
Query: 161 LRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDV 220
LRRVIE YT N RF LICN ++KIIPALQSRCTRFRF PL ++ RL+H+I E +++
Sbjct: 123 LRRVIETYTDNVRFCLICNYLSKIIPALQSRCTRFRFGPLSMEQMSVRLQHIIREENINI 182
Query: 221 TEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNE 280
T+ G+ ++V+L GDMR++LNILQST MA + + VYLCTG PLP+DI+QI W+L E
Sbjct: 183 TDSGMDSVVKLAQGDMRRSLNILQSTSMAYDTVDQRTVYLCTGQPLPEDIKQIVEWMLGE 242
Query: 281 SFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCN 340
F ++++I E+K+ KGLAL DI+ E+ V +I P+ VR+ L++ +++IEY +S G +
Sbjct: 243 DFMTAYQKIIELKIEKGLALHDIITEIHHLVHRIDFPAKVRLALLDKMSNIEYNVSTGTS 302
Query: 341 DKLQLGSIISTFTQARSAIVAAAK 364
+++QLG++I F R + A++
Sbjct: 303 ERIQLGALIGAFQNVRDIVSDASR 326
>gi|157123250|ref|XP_001660080.1| replication factor c / DNA polymerase iii gamma-tau subunit [Aedes
aegypti]
gi|108874432|gb|EAT38657.1| AAEL009465-PA [Aedes aegypti]
Length = 330
Score = 377 bits (968), Expect = e-102, Method: Compositional matrix adjust.
Identities = 181/324 (55%), Positives = 241/324 (74%), Gaps = 5/324 (1%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP +L+D+ +H +I+ TI++ E +LPHLL YGPPGTGKTSTILA AR+LY
Sbjct: 10 PWVEKYRPATLSDLISHEEIISTINKFIQEEQLPHLLFYGPPGTGKTSTILACARQLYKP 69
Query: 102 Q-YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFA 160
Q ++ M+LELNASDDRGI++VR QI +FAST++ G KL++LDEADAMT DAQ A
Sbjct: 70 QSFNQMVLELNASDDRGINIVRNQILNFASTRTIFSG---GYKLIILDEADAMTNDAQNA 126
Query: 161 LRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDV 220
LRR+IEKYT N RF +ICN ++KIIPALQSRCTRFRFAPL P + RL+HVI+AEG+ V
Sbjct: 127 LRRIIEKYTDNVRFCIICNYLSKIIPALQSRCTRFRFAPLSPDQILPRLEHVIDAEGIKV 186
Query: 221 TEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLN- 279
++ G AL+ L GDMRK LN+LQST MA + +TE+ VY C G+PL DI I WLLN
Sbjct: 187 SDDGKKALMTLAGGDMRKVLNVLQSTWMAYKDVTEDNVYTCVGHPLKIDITNIVNWLLNV 246
Query: 280 ESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGC 339
ESF ++F++I E+K KGLAL DI+ E+ ++V ++++P V +L+ +A +E RL+ GC
Sbjct: 247 ESFKETFEKIQELKTNKGLALEDILTEIHLYVHRMELPPRVMSQLLIKMAAVEERLAAGC 306
Query: 340 NDKLQLGSIISTFTQARSAIVAAA 363
+K Q+ S+I+ F AR ++ A
Sbjct: 307 VEKPQMASLIAAFQIARDQVIVEA 330
>gi|229366198|gb|ACQ58079.1| Replication factor C subunit 5 [Anoplopoma fimbria]
Length = 335
Score = 376 bits (965), Expect = e-101, Method: Compositional matrix adjust.
Identities = 179/323 (55%), Positives = 239/323 (73%), Gaps = 4/323 (1%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYG- 100
PWVEKYRPQ L D+ +H+DI+ TI + SE++LPHLL YGPPGTG+TSTILA A++LY
Sbjct: 15 PWVEKYRPQKLDDLISHKDILSTIQKFISEDKLPHLLFYGPPGTGETSTILACAKQLYKE 74
Query: 101 AQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFA 160
++ +M+LELNASDDRGIDVVR + FAST++ K KLV+LDEAD MT+DAQ A
Sbjct: 75 KEFTSMVLELNASDDRGIDVVRGPVLSFASTRTI---FKRGFKLVILDEADHMTQDAQNA 131
Query: 161 LRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDV 220
LRRVIEKYT+NTR LICN ++KIIPALQSRCTRFRF PL P + RL++V++ E +D+
Sbjct: 132 LRRVIEKYTENTRLCLICNYLSKIIPALQSRCTRFRFGPLSPDQMIPRLEYVVQQESIDI 191
Query: 221 TEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNE 280
GG+ A+V L +GDMR++LNILQST MA ++TE+ VY CTG+PL DI I W LN+
Sbjct: 192 NPGGMKAIVTLSSGDMRRSLNILQSTSMAYGKVTEDTVYTCTGHPLRSDIANILDWSLNK 251
Query: 281 SFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCN 340
F ++K I ++K KGLAL DI+ EV + + ++ P +R+ L+ LADIE+RL+ G N
Sbjct: 252 DFTSAYKEILQLKTLKGLALNDILTEVHLLIHRVDFPPAIRIGLLIKLADIEHRLASGTN 311
Query: 341 DKLQLGSIISTFTQARSAIVAAA 363
+K+QL S+++ F R +V+ A
Sbjct: 312 EKIQLSSMVAAFQAVRDLVVSEA 334
>gi|388858041|emb|CCF48278.1| probable RFC3-DNA replication factor C, 40 kDa subunit [Ustilago
hordei]
Length = 343
Score = 376 bits (965), Expect = e-101, Method: Compositional matrix adjust.
Identities = 180/330 (54%), Positives = 234/330 (70%), Gaps = 1/330 (0%)
Query: 21 KPKDNGKNVIVSGTPPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLY 80
K K + S + D+ PWVEKYRP +L D+ +H+DI TI NRLPHLL Y
Sbjct: 4 KGKGKADDTSASASATDLDLLPWVEKYRPATLEDLVSHKDITSTIQNFIDRNRLPHLLFY 63
Query: 81 GPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKA 140
GPPGTGKTSTILA+ARK++G Q+ N +LELNASDDRGI+VVR+QI+ FAST+S F K
Sbjct: 64 GPPGTGKTSTILAMARKIFGPQFRNSVLELNASDDRGIEVVREQIKGFASTKSV-FSSKG 122
Query: 141 SVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPL 200
KL++LDEADAMT+ AQ ALRRVIE+YTKN RF +ICN VNKIIPA+QSRCTRFRF PL
Sbjct: 123 GFKLIVLDEADAMTQAAQGALRRVIEQYTKNVRFCIICNYVNKIIPAIQSRCTRFRFNPL 182
Query: 201 EPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYL 260
+ V +RL HVIE EG +T+ G AL++L GDMR+ALN+LQ+ H AS I E AVY
Sbjct: 183 QLDQVEDRLNHVIENEGCKITQDGKEALLKLSRGDMRRALNVLQACHAASDHIDETAVYN 242
Query: 261 CTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDV 320
CTGNP P DIE + ++ E F ++ IS +K KG+AL D++ V + IK+P+
Sbjct: 243 CTGNPHPSDIEAMLKSMMQEEFTTAYTTISGLKTAKGIALADMISGVYDLLATIKLPAKS 302
Query: 321 RVRLMNDLADIEYRLSFGCNDKLQLGSIIS 350
++ L++ LA E+RLS G ++K+QL +++
Sbjct: 303 KIYLLDHLAHTEHRLSTGGSEKIQLTALLG 332
>gi|193676219|ref|XP_001942989.1| PREDICTED: replication factor C subunit 5-like [Acyrthosiphon
pisum]
Length = 329
Score = 375 bits (963), Expect = e-101, Method: Compositional matrix adjust.
Identities = 178/322 (55%), Positives = 239/322 (74%), Gaps = 4/322 (1%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYG- 100
PWVEKYRP +L D+ +H DI+ TI + E++LPHLL YGPPGTGKTSTILA A++LY
Sbjct: 9 PWVEKYRPNTLDDLISHEDIIQTIGKFIKEDQLPHLLFYGPPGTGKTSTILACAKQLYTP 68
Query: 101 AQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFA 160
AQ+ +M+LELNASDDRGI+VVR Q+ +FAST++ K+ KL++LDEADAMT DAQ A
Sbjct: 69 AQFRSMVLELNASDDRGINVVRGQVLNFASTRTI---FKSGFKLIILDEADAMTNDAQNA 125
Query: 161 LRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDV 220
LRR+IEK+T N RF LICN ++KIIPALQSRCTRFRF PL+ + RL++V+E E + V
Sbjct: 126 LRRIIEKFTDNVRFCLICNYLSKIIPALQSRCTRFRFGPLDSKQIMPRLEYVVEQEKVKV 185
Query: 221 TEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNE 280
TE G AL+ L GDMRK LNILQS A ++ E++VY C G+PL DI I WLLN+
Sbjct: 186 TEDGKKALIDLAQGDMRKVLNILQSAATAFPEVNEDSVYTCVGHPLKSDIMNILKWLLND 245
Query: 281 SFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCN 340
F+ +FK+I E+K++KGLAL DI+ E+ F++++ +P D + ++ ++ADIE RL+ G +
Sbjct: 246 DFSTTFKKIQELKIQKGLALQDILTELHTFLYRLDLPPDSLIEILTEMADIEIRLNGGTS 305
Query: 341 DKLQLGSIISTFTQARSAIVAA 362
+K+ LGS+IS F RS + A
Sbjct: 306 EKIHLGSLISAFHMIRSKLKPA 327
>gi|390346340|ref|XP_003726529.1| PREDICTED: replication factor C subunit 5-like [Strongylocentrotus
purpuratus]
Length = 342
Score = 375 bits (963), Expect = e-101, Method: Compositional matrix adjust.
Identities = 178/307 (57%), Positives = 234/307 (76%), Gaps = 4/307 (1%)
Query: 39 KASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKL 98
K PWVEKYRP SL D+ +H +I++TI + ++RLPHLL YGPPGTGKTSTILAVA++L
Sbjct: 8 KNLPWVEKYRPNSLDDLISHTEIINTIQKFIKQDRLPHLLFYGPPGTGKTSTILAVAKQL 67
Query: 99 YGA-QYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDA 157
Y ++++M+LELNASDDRGI +VR I +FAST++ K+ KLV+LDEADAMT DA
Sbjct: 68 YAPKEFNSMVLELNASDDRGIGIVRGSILNFASTRTI---FKSGFKLVILDEADAMTNDA 124
Query: 158 QFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEG 217
Q ALRRVIEK+T+NTRF ICN ++KIIPALQSRCTRFRF PL+ + RL+ V+ E
Sbjct: 125 QNALRRVIEKFTENTRFCFICNYLSKIIPALQSRCTRFRFGPLDNQQIVPRLEFVVREEN 184
Query: 218 LDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWL 277
+D+TE G AL+ L GDMR+ +NILQST MA +++TEE VYLCTG+PL DIE I W+
Sbjct: 185 VDMTEDGKKALITLAKGDMRRVINILQSTSMAHEKVTEENVYLCTGHPLRTDIENIVNWM 244
Query: 278 LNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSF 337
LNE F +F I+++K KGLAL+DI+ EV +V +I+ P VR+ L++ ++DIEYRL+
Sbjct: 245 LNEDFTAAFNHINQLKTLKGLALLDILLEVHTYVHRIEFPQKVRIYLLDKMSDIEYRLAA 304
Query: 338 GCNDKLQ 344
G ++KLQ
Sbjct: 305 GTSEKLQ 311
>gi|213514520|ref|NP_001135046.1| replication factor C subunit 5 [Salmo salar]
gi|209738250|gb|ACI69994.1| Replication factor C subunit 5 [Salmo salar]
Length = 335
Score = 375 bits (963), Expect = e-101, Method: Compositional matrix adjust.
Identities = 183/323 (56%), Positives = 239/323 (73%), Gaps = 4/323 (1%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYG- 100
PWVEKYRPQ+L D+ +H+DI+ TI + SE+RLPHLL YGPPGTGKTST+LA A++LY
Sbjct: 15 PWVEKYRPQTLDDLISHKDILSTIQKFISEDRLPHLLFYGPPGTGKTSTVLASAKQLYKE 74
Query: 101 AQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFA 160
+++ M+LELNASDDRGIDVVR I FAST++ K KLV+LDEADAMT+DAQ A
Sbjct: 75 KEFNAMVLELNASDDRGIDVVRGPILSFASTRTI---FKKGFKLVILDEADAMTRDAQNA 131
Query: 161 LRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDV 220
LRRVIEKYT+NTRF LICN ++KIIPALQSRCTRFRF PL + RL+ VI+ E +DV
Sbjct: 132 LRRVIEKYTENTRFCLICNYLSKIIPALQSRCTRFRFGPLSQDQMIPRLEFVIQQESIDV 191
Query: 221 TEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNE 280
T G+ A+V L +GDMR++LNILQST MA ++TE+ VY CTG+PL DI I W LN+
Sbjct: 192 TPDGMKAIVTLSSGDMRRSLNILQSTSMAYGKVTEDNVYTCTGHPLRSDIANILDWSLNK 251
Query: 281 SFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCN 340
F ++ +I ++K KGLAL DI+ EV + + ++ P +R+ L+ LADIEYRL+ G +
Sbjct: 252 DFTSAYNQILQLKTLKGLALHDILTEVHLLIHRVDFPPAIRMGLLIKLADIEYRLASGTS 311
Query: 341 DKLQLGSIISTFTQARSAIVAAA 363
+K+QL S+++ F R +V A
Sbjct: 312 EKIQLSSMVAAFQAVRDIVVNEA 334
>gi|383849950|ref|XP_003700596.1| PREDICTED: replication factor C subunit 5-like [Megachile
rotundata]
Length = 329
Score = 373 bits (958), Expect = e-101, Method: Compositional matrix adjust.
Identities = 176/317 (55%), Positives = 238/317 (75%), Gaps = 4/317 (1%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP+ L D+ +H DI+ TI++ +E++LPHLL YGPPGTGKTSTILA ARKLY A
Sbjct: 12 PWVEKYRPKKLDDLISHEDIIKTINKFINEDQLPHLLFYGPPGTGKTSTILACARKLYTA 71
Query: 102 -QYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFA 160
Q+++M+LE+NASDDRGI +VR QI +FAST + K+ KL++LDEADAMT DAQ A
Sbjct: 72 GQFNSMVLEMNASDDRGIGIVRGQILNFASTGTL---YKSGFKLIILDEADAMTNDAQNA 128
Query: 161 LRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDV 220
LRR+IEKYT N RF +ICN ++KIIPALQSRCT+FRF PL + RL+ +I+ E L+V
Sbjct: 129 LRRIIEKYTDNVRFCIICNYLSKIIPALQSRCTKFRFGPLSSDQILPRLETIIKEENLNV 188
Query: 221 TEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNE 280
+E G AL+ L GDMRK LN+LQST +A +TEE VY C G+PLP DI+ I WLLNE
Sbjct: 189 SEDGKEALIALSGGDMRKVLNVLQSTWLAFGTVTEETVYTCVGHPLPIDIKNIVNWLLNE 248
Query: 281 SFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCN 340
S+ + +I ++K++KGLAL DI+ ++ +FV KI+ P + + L+ LA+IE R++ GC+
Sbjct: 249 SYELCYCKIQDIKLKKGLALQDILTQLHLFVNKIEFPDSILIELIIKLAEIEKRVAIGCS 308
Query: 341 DKLQLGSIISTFTQARS 357
+ +QL +++S F AR+
Sbjct: 309 EPVQLNALVSAFQNARN 325
>gi|307170254|gb|EFN62614.1| Replication factor C subunit 5 [Camponotus floridanus]
Length = 329
Score = 373 bits (957), Expect = e-101, Method: Compositional matrix adjust.
Identities = 186/328 (56%), Positives = 238/328 (72%), Gaps = 5/328 (1%)
Query: 31 VSGTPPDIKAS-PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTS 89
+S T + +A+ PWVEKYRP+SL ++ +H I+ TI++ EN+LPHLLLYGPPGTGKTS
Sbjct: 1 MSSTTAEQRANLPWVEKYRPKSLDELISHETIIRTINKFIDENQLPHLLLYGPPGTGKTS 60
Query: 90 TILAVARKLYG-AQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLD 148
TILA ARKLY Q+++M+LELNASDDRGI +VR QI FAST + K++ KL++LD
Sbjct: 61 TILACARKLYTPTQFNSMVLELNASDDRGIGIVRGQILSFASTGTM---YKSAFKLIILD 117
Query: 149 EADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTER 208
EADAMT DAQ ALRR+IEKYT N RF +ICN ++KIIPALQSRCTRFRF PL + R
Sbjct: 118 EADAMTIDAQNALRRIIEKYTDNVRFCIICNYLSKIIPALQSRCTRFRFLPLAAEQIIPR 177
Query: 209 LKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPK 268
L +VIEAE L VTE G AL+ L GDMRK L++LQST A + +E VY C G+PLP
Sbjct: 178 LNYVIEAENLKVTEDGKEALMTLSGGDMRKVLSVLQSTWFAYGIVNQENVYNCVGHPLPS 237
Query: 269 DIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDL 328
DI I WLLNES+ +K+I E+K+ KGLAL DI+ E+ + V KI P+ V + L+ +
Sbjct: 238 DIHTIINWLLNESYDTCYKKIQELKLNKGLALQDILTEIHLCVIKIDFPNSVFIDLLCKM 297
Query: 329 ADIEYRLSFGCNDKLQLGSIISTFTQAR 356
A+IE RL+ GC D +Q+ S+IS F + R
Sbjct: 298 AEIEKRLASGCRDIIQINSLISAFYKVR 325
>gi|432872493|ref|XP_004072116.1| PREDICTED: replication factor C subunit 5-like [Oryzias latipes]
Length = 340
Score = 373 bits (957), Expect = e-101, Method: Compositional matrix adjust.
Identities = 185/339 (54%), Positives = 240/339 (70%), Gaps = 9/339 (2%)
Query: 31 VSGTPPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTST 90
S TP + PWVEKYRPQ L D+ +HRDI+ TI R E+RLPHLLLYGPPGTGKTST
Sbjct: 4 TSRTPLQSRNLPWVEKYRPQKLDDLISHRDILSTIQRFVREDRLPHLLLYGPPGTGKTST 63
Query: 91 ILAVARKLY-GAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDE 149
ILA AR+LY ++++M+LELNASDDRGIDVVR I FAST++ K KLV+LDE
Sbjct: 64 ILACARQLYKDKEFNSMVLELNASDDRGIDVVRGPILSFASTRTI---FKKGFKLVILDE 120
Query: 150 ADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERL 209
ADAMT+DAQ ALRRVIEK+T+NTRF LICN ++KIIPALQSRCTRFRF PL + RL
Sbjct: 121 ADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLSADQMIPRL 180
Query: 210 KHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKD 269
+HVI+ E +D+TE G+ A+V L +GDMR++LN+LQST MA ++TE++VY CTG PL D
Sbjct: 181 RHVIQEESIDITEDGMKAIVTLSSGDMRRSLNVLQSTSMAYGKVTEDSVYTCTGQPLRSD 240
Query: 270 IEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLA 329
I I W LN+ F ++K+I ++K KGLAL DI+ E+ + V ++ P R A
Sbjct: 241 IANILDWCLNKDFTSAYKQILQLKTLKGLALHDILTELHLLVHRVDFPPATRXXXXYKCA 300
Query: 330 D-----IEYRLSFGCNDKLQLGSIISTFTQARSAIVAAA 363
D +RL+ G ++K+QL S++ F + R +V+ A
Sbjct: 301 DASFFTFRHRLASGTDEKIQLSSMVGAFQEVRDLVVSEA 339
>gi|291002133|ref|XP_002683633.1| predicted protein [Naegleria gruberi]
gi|284097262|gb|EFC50889.1| predicted protein [Naegleria gruberi]
Length = 351
Score = 373 bits (957), Expect = e-101, Method: Compositional matrix adjust.
Identities = 177/325 (54%), Positives = 234/325 (72%), Gaps = 5/325 (1%)
Query: 40 ASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLY 99
A W+EKYRP L D+ +H +I+ TI RL +LPHLLLYGPPGTGKTST+LA+A+KL+
Sbjct: 11 AKMWIEKYRPHELTDLLSHTEIISTIQRLIDGGKLPHLLLYGPPGTGKTSTVLAIAKKLF 70
Query: 100 GAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSF-----GVKASVKLVLLDEADAMT 154
G + +LELNASDDRGIDV+R +I+DFAST+ F +KL++LDEAD MT
Sbjct: 71 GNRLTQNVLELNASDDRGIDVIRNEIKDFASTKGLKFFTAQKDTTPDIKLIILDEADQMT 130
Query: 155 KDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIE 214
KDAQ ALRR IEKY+KN RF LICN VNKIIPALQSRCTRFRF+PL+ V RL+ + +
Sbjct: 131 KDAQAALRRTIEKYSKNVRFCLICNYVNKIIPALQSRCTRFRFSPLKKHEVVSRLEEICK 190
Query: 215 AEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQIS 274
E + + GL A+ RL NGDMRK +NILQST M+ QITE+ V++CTGNPL +DI I
Sbjct: 191 EENVIYNQVGLDAIYRLSNGDMRKCVNILQSTFMSFGQITEDNVHMCTGNPLKEDIRLII 250
Query: 275 YWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYR 334
L N+S AD++K++ +K +GLAL DI+R++ +V K+ +P VR+ L+ ++DIEYR
Sbjct: 251 NSLFNDSLADAYKKVMNIKTERGLALQDILRDIHPYVMKLNIPIAVRIYLLEKMSDIEYR 310
Query: 335 LSFGCNDKLQLGSIISTFTQARSAI 359
LS G ++ LQ ++IS F A+ +
Sbjct: 311 LSLGTSESLQTMALISAFQIAKEPV 335
>gi|225716862|gb|ACO14277.1| Replication factor C subunit 5 [Esox lucius]
Length = 335
Score = 373 bits (957), Expect = e-100, Method: Compositional matrix adjust.
Identities = 183/333 (54%), Positives = 242/333 (72%), Gaps = 4/333 (1%)
Query: 32 SGTPPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTI 91
S P + PWVEKYRPQ+L D+ +H+DI+ TI + SE+RLPHLL YGPPGTGK STI
Sbjct: 5 SKIPLQSRNLPWVEKYRPQTLDDLISHKDILSTIQKFISEDRLPHLLFYGPPGTGKISTI 64
Query: 92 LAVARKLY-GAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEA 150
LA A++LY +++ M+LELNASDDRGIDVVR I FAST++ K KLV+LDEA
Sbjct: 65 LACAKQLYKDKEFNAMVLELNASDDRGIDVVRGPILSFASTRTI---FKKGFKLVILDEA 121
Query: 151 DAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLK 210
DAMT+DAQ ALRRVIEKYT+NTRF LICN ++KIIPALQSRCTR RF PL + RL+
Sbjct: 122 DAMTRDAQNALRRVIEKYTENTRFCLICNYLSKIIPALQSRCTRSRFGPLSQDQMIPRLE 181
Query: 211 HVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDI 270
HVI+ E +DVT G+ A+V L +GDMR++LNILQST MA ++TE+ VY CTG+PL DI
Sbjct: 182 HVIQQESIDVTPDGMKAIVTLSSGDMRRSLNILQSTSMAYGKVTEDNVYTCTGHPLRSDI 241
Query: 271 EQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLAD 330
I W LN+ F+ ++K+ ++K KGLAL DI+ E+ + + ++ P +R+ L+ LA+
Sbjct: 242 ANILEWALNKDFSTAYKQTLQLKTLKGLALHDILTEIHLVIHRVDFPPAIRMGLLIKLAE 301
Query: 331 IEYRLSFGCNDKLQLGSIISTFTQARSAIVAAA 363
IEYRL+ G ++K+QL S+++ F R +V A
Sbjct: 302 IEYRLASGTSEKIQLSSMVAAFQAVRDIVVNEA 334
>gi|442754535|gb|JAA69427.1| Putative replication factor c subunit rfc5 [Ixodes ricinus]
Length = 328
Score = 372 bits (956), Expect = e-100, Method: Compositional matrix adjust.
Identities = 180/319 (56%), Positives = 242/319 (75%), Gaps = 4/319 (1%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYG- 100
PWVEKYRP L D+ AH DI+ TI+R +E+RLPHLL YGPPGTGKTSTILA AR++YG
Sbjct: 12 PWVEKYRPNKLDDLIAHEDIISTINRFINEDRLPHLLFYGPPGTGKTSTILACARQIYGP 71
Query: 101 AQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFA 160
++ +M+LELNASDDRGI +VR +I +FAST+S K+ KL++LDEADAMT DAQ A
Sbjct: 72 KEFGSMVLELNASDDRGIGIVRGEILNFASTKSI---FKSGFKLIILDEADAMTNDAQNA 128
Query: 161 LRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDV 220
LRRVIEK+T+N RF LICN ++KIIPALQSRCTRFRF PL ++ R+++VIE E L V
Sbjct: 129 LRRVIEKFTENARFCLICNYLSKIIPALQSRCTRFRFGPLSLSQMSPRIEYVIEQERLTV 188
Query: 221 TEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNE 280
T+ G AL+ L GDMRKALNILQST MA +++TE VY C G PL DI + LLNE
Sbjct: 189 TDDGKKALMDLAQGDMRKALNILQSTSMAFEEVTENNVYQCVGLPLKSDISNMVITLLNE 248
Query: 281 SFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCN 340
FA S+ +I+++K+ KGLAL D++ ++ ++V +I+ P++V++ L++ +A+IE RL+ G +
Sbjct: 249 DFAFSYDQINKVKVSKGLALQDVLTQIHLYVHRIEFPNEVKMYLIDKMAEIENRLAAGTS 308
Query: 341 DKLQLGSIISTFTQARSAI 359
+K+QL S+I+ F AR +
Sbjct: 309 EKIQLSSLIAAFQTARQMV 327
>gi|340720472|ref|XP_003398661.1| PREDICTED: replication factor C subunit 5-like isoform 1 [Bombus
terrestris]
gi|340720474|ref|XP_003398662.1| PREDICTED: replication factor C subunit 5-like isoform 2 [Bombus
terrestris]
Length = 329
Score = 372 bits (956), Expect = e-100, Method: Compositional matrix adjust.
Identities = 178/316 (56%), Positives = 236/316 (74%), Gaps = 4/316 (1%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYG- 100
PWVEKYRP+ L D+ +H +I+ TI++ EN+LPHLL YGPPGTGKTSTILA ARKLY
Sbjct: 12 PWVEKYRPKKLDDLISHEEIIKTINKFIDENQLPHLLFYGPPGTGKTSTILACARKLYTP 71
Query: 101 AQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFA 160
AQ+++M+LE+NASDDRGI +VR QI FAST + ++ KL++LDEADAMTKDAQ A
Sbjct: 72 AQFNSMVLEMNASDDRGIGIVRGQILSFASTGTM---YRSGFKLIILDEADAMTKDAQNA 128
Query: 161 LRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDV 220
LRR+IEKYT N RF +ICN +++IIPALQSRCT+FRF PL + RL +I+ E L+V
Sbjct: 129 LRRIIEKYTDNVRFCIICNYLSQIIPALQSRCTKFRFGPLSTDQILPRLDAIIKEENLNV 188
Query: 221 TEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNE 280
+E G AL+ L GDMRK LN+LQST +A +TEE VY C G+PLP DI+ I WLLNE
Sbjct: 189 SEDGKQALITLSGGDMRKVLNVLQSTSLAFSAVTEENVYSCVGHPLPIDIKNIINWLLNE 248
Query: 281 SFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCN 340
S+ + +I ++K++KGLAL DI+ E+ +FV KI+ P V + L+ LA+IE R+S GC+
Sbjct: 249 SYELCYCKIQDIKLKKGLALQDILTELHLFVNKIEFPDSVLIDLVIKLAEIEKRVSIGCS 308
Query: 341 DKLQLGSIISTFTQAR 356
+ +QL +++S F +AR
Sbjct: 309 EAVQLNALVSAFQRAR 324
>gi|428167624|gb|EKX36580.1| replication factor C subunit 4 [Guillardia theta CCMP2712]
Length = 350
Score = 372 bits (956), Expect = e-100, Method: Compositional matrix adjust.
Identities = 173/325 (53%), Positives = 239/325 (73%), Gaps = 6/325 (1%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PW+EKYRP++L DV AH+DI+ T+DR ++RLPHLLLYGPPGTGKTST+LA+A+K++G
Sbjct: 23 PWIEKYRPETLNDVVAHKDILTTLDRFLEQDRLPHLLLYGPPGTGKTSTVLALAKKVFGP 82
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGV-----KASVKLVLLDEADAMTKD 156
+Y +M LELNASDDRGIDVV+++I+DFA T++ FG+ + K+++LDEAD MT+
Sbjct: 83 KYKSMTLELNASDDRGIDVVKKEIKDFAGTRTI-FGLIVLLCRTGFKMIILDEADNMTQT 141
Query: 157 AQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAE 216
AQFALRR+IE YT N RF LICN VNKIIPALQSRCTRFRF+PL + L+ +++ E
Sbjct: 142 AQFALRRIIENYTANARFCLICNYVNKIIPALQSRCTRFRFSPLTSADIQGNLERILDKE 201
Query: 217 GLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYW 276
+ T L A+ ++ GDMRK LNILQS+ MAS+++T E++Y CTG+P P D+ I++
Sbjct: 202 NIKATPDALKAVEKISGGDMRKCLNILQSSSMASKEVTVESIYECTGDPNPSDVMWITHS 261
Query: 277 LLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLS 336
L N+SF D + +I E++ KGLAL+DIVR V + K +PS RL+ L+D+EYRL+
Sbjct: 262 LCNDSFEDCYHKIFEIQREKGLALIDIVRAVHEQIIKHDLPSVPFCRLLESLSDLEYRLT 321
Query: 337 FGCNDKLQLGSIISTFTQARSAIVA 361
N+K+QLGS + F Q + + +
Sbjct: 322 AATNEKIQLGSFVGMFGQLKEELAS 346
>gi|350412747|ref|XP_003489747.1| PREDICTED: replication factor C subunit 5-like [Bombus impatiens]
Length = 329
Score = 372 bits (955), Expect = e-100, Method: Compositional matrix adjust.
Identities = 177/316 (56%), Positives = 236/316 (74%), Gaps = 4/316 (1%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYG- 100
PWVEKYRP+ L D+ +H +I+ TI++ EN+LPHLL YGPPGTGKTSTILA ARKLY
Sbjct: 12 PWVEKYRPKKLDDLISHEEIIKTINKFIDENQLPHLLFYGPPGTGKTSTILACARKLYTP 71
Query: 101 AQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFA 160
AQ+++M+LE+NASDDRGI +VR QI FAST + ++ KL++LDEADAMTKDAQ A
Sbjct: 72 AQFNSMVLEMNASDDRGIGIVRGQILSFASTGTM---YRSGFKLIILDEADAMTKDAQNA 128
Query: 161 LRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDV 220
LRR+IEKYT N RF +ICN +++IIPALQSRCT+FRF PL + RL +I+ E L+V
Sbjct: 129 LRRIIEKYTDNVRFCIICNYLSQIIPALQSRCTKFRFGPLSTDQILPRLDTIIKEENLNV 188
Query: 221 TEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNE 280
+E G AL+ L GDMRK LN+LQST +A +TEE VY C G+PLP DI+ I WLLNE
Sbjct: 189 SEDGKQALITLSGGDMRKVLNVLQSTSLAFSAVTEENVYSCVGHPLPIDIKNIINWLLNE 248
Query: 281 SFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCN 340
S+ + +I ++K++KGLAL DI+ E+ +FV KI+ P + + L+ LA+IE R+S GC+
Sbjct: 249 SYELCYCKIQDIKLKKGLALQDILTELHLFVNKIEFPDSILIDLVIKLAEIEKRVSIGCS 308
Query: 341 DKLQLGSIISTFTQAR 356
+ +QL +++S F +AR
Sbjct: 309 EAVQLNALVSAFQRAR 324
>gi|260791339|ref|XP_002590697.1| hypothetical protein BRAFLDRAFT_125553 [Branchiostoma floridae]
gi|229275893|gb|EEN46708.1| hypothetical protein BRAFLDRAFT_125553 [Branchiostoma floridae]
Length = 329
Score = 372 bits (954), Expect = e-100, Method: Compositional matrix adjust.
Identities = 181/322 (56%), Positives = 236/322 (73%), Gaps = 4/322 (1%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYG- 100
PWVEKYRP+ + ++ +H+DI+ TI R E+RLPHLL YGPPGTGKTSTILA AR+LY
Sbjct: 11 PWVEKYRPKEMTELISHQDIISTIQRFLDEDRLPHLLFYGPPGTGKTSTILACARRLYAD 70
Query: 101 AQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFA 160
++++M+LELNASDDRGI +VR + FAST++ K KLV+LDEADAMT DAQ A
Sbjct: 71 REFNSMVLELNASDDRGIGIVRGPVLQFASTRTI---FKRGFKLVILDEADAMTGDAQNA 127
Query: 161 LRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDV 220
LRRV+EK+T+NTRF LICN ++KIIPA+QSRCTRFRF PL + RL+HVI+ E +DV
Sbjct: 128 LRRVMEKFTENTRFCLICNYLSKIIPAIQSRCTRFRFGPLGVDQMLPRLEHVIQEEKVDV 187
Query: 221 TEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNE 280
T+ G A+++L NGDMR+ LNILQST MA + E+ VYL TG PL DI I W+LNE
Sbjct: 188 TDDGKKAILQLANGDMRRVLNILQSTSMAHDVVDEDNVYLVTGQPLRSDIANIVNWMLNE 247
Query: 281 SFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCN 340
+F ++ I ++K+ KGLAL DI+ EV +FV +I P V++ L+ +AD+EYRLS G N
Sbjct: 248 NFTTAYNNIFQLKVLKGLALQDILTEVHLFVHRIDFPMAVKMVLLQKMADVEYRLSAGTN 307
Query: 341 DKLQLGSIISTFTQARSAIVAA 362
+KLQL S+I+ F R+ A
Sbjct: 308 EKLQLSSVIAAFQVVRNVAAQA 329
>gi|48097300|ref|XP_393747.1| PREDICTED: replication factor C subunit 5-like [Apis mellifera]
Length = 328
Score = 371 bits (953), Expect = e-100, Method: Compositional matrix adjust.
Identities = 177/316 (56%), Positives = 233/316 (73%), Gaps = 4/316 (1%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLY-G 100
PWVEKYRP+ L D+ +H +I+ TI++ EN LPHLL YGPPGTGKTSTILA ARKLY
Sbjct: 12 PWVEKYRPKKLDDLISHEEIIKTINKFIDENLLPHLLFYGPPGTGKTSTILACARKLYTS 71
Query: 101 AQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFA 160
AQ+++M+LE+NASDDRGI++VR QI FAST + K+ KL++LDEADAMT DAQ A
Sbjct: 72 AQFNSMVLEMNASDDRGINIVRGQILSFASTGTM---YKSGFKLIILDEADAMTNDAQNA 128
Query: 161 LRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDV 220
LRR+IEKYT N RF +ICN ++KIIPALQSRCT+FRF PL + RL +I+ E L+V
Sbjct: 129 LRRIIEKYTDNVRFCIICNYLSKIIPALQSRCTKFRFGPLSIDQILPRLDTIIKEENLNV 188
Query: 221 TEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNE 280
TE G AL+ L GDMRK LN+LQST +A +TEE VY C G+PLP DI+ I WL NE
Sbjct: 189 TEDGKQALITLSGGDMRKVLNVLQSTWLAFGAVTEENVYSCVGHPLPIDIKNIVNWLFNE 248
Query: 281 SFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCN 340
S+ + +I ++K++KGLAL DI+ E+ +F+ KI+ P + + L+ LA+IE R+S GC+
Sbjct: 249 SYELCYCKIQDIKLKKGLALQDILTELHLFINKIEFPDSILIDLIIKLAEIEKRVSIGCS 308
Query: 341 DKLQLGSIISTFTQAR 356
+ +QL +++S F AR
Sbjct: 309 EAVQLNALVSAFQNAR 324
>gi|402223757|gb|EJU03821.1| P-loop containing nucleoside triphosphate hydrolase protein
[Dacryopinax sp. DJM-731 SS1]
Length = 356
Score = 371 bits (952), Expect = e-100, Method: Compositional matrix adjust.
Identities = 176/321 (54%), Positives = 236/321 (73%), Gaps = 5/321 (1%)
Query: 31 VSGTPPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTST 90
+ G P D PWVEKYRP +L DV +H+DI TI++ +NRLPHLL YGPPGTGKTST
Sbjct: 29 LDGRPGDADNLPWVEKYRPATLDDVVSHKDITSTIEKFIEQNRLPHLLFYGPPGTGKTST 88
Query: 91 ILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQS-FSFGVKASVKLVLLDE 149
ILAVARK+YG +Y ILELNASDDRGIDVVR+QI++FA ++ +S G K L++LDE
Sbjct: 89 ILAVARKIYGNEYRKQILELNASDDRGIDVVREQIKNFAEMRTLYSKGFK----LIVLDE 144
Query: 150 ADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERL 209
AD MT+ AQ ALRRVIE+YT+N RF +ICN VNKIIPA+QSRCTRFRF+PL + +R+
Sbjct: 145 ADMMTQAAQSALRRVIEQYTRNVRFCIICNYVNKIIPAIQSRCTRFRFSPLPQTEIEKRI 204
Query: 210 KHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKD 269
K V+EAE +++TE G AL++L GDMR+ALNILQ+ H A + E A+Y CTGNP P D
Sbjct: 205 KQVVEAEHVNLTEDGKQALLKLSKGDMRRALNILQACHAAYDRTDETAIYNCTGNPHPSD 264
Query: 270 IEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLA 329
IE I ++N+ F+ S++++S MK KGLAL D++ ++ +++P RV L++ LA
Sbjct: 265 IEAIVTSMMNDEFSTSYQKVSRMKTDKGLALQDLIAGTYEYLESLELPPQTRVYLLDHLA 324
Query: 330 DIEYRLSFGCNDKLQLGSIIS 350
E+RLS G ++K+QL +++
Sbjct: 325 TTEHRLSTGGSEKVQLTALLG 345
>gi|66812244|ref|XP_640301.1| replication factor C subunit [Dictyostelium discoideum AX4]
gi|74855117|sp|Q54ST4.1|RFC5_DICDI RecName: Full=Probable replication factor C subunit 5; AltName:
Full=Activator 1 subunit 5
gi|60468315|gb|EAL66323.1| replication factor C subunit [Dictyostelium discoideum AX4]
Length = 347
Score = 370 bits (951), Expect = e-100, Method: Compositional matrix adjust.
Identities = 184/318 (57%), Positives = 231/318 (72%), Gaps = 5/318 (1%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP++L D+ AH DI TI +L N LPHLL YGPPGTGKTSTI A+ARKLYG
Sbjct: 25 PWVEKYRPKNLDDLIAHEDITQTITKLIDNNTLPHLLFYGPPGTGKTSTIQAIARKLYGD 84
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFAL 161
Y M+LELNASDDRGIDVVR+QI+ FAS+ F F KL++LDEAD+MT AQ AL
Sbjct: 85 NYSRMVLELNASDDRGIDVVREQIKTFASSM-FFFNTTVPYKLIILDEADSMTNIAQTAL 143
Query: 162 RRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTE-RLKHVIEAEGLDV 220
RRVIEKYTK TRF ++CN V KIIPALQSRCTRFRF+PL P TE RLK +IE E + V
Sbjct: 144 RRVIEKYTKTTRFCIVCNYVIKIIPALQSRCTRFRFSPL-PTPPTEIRLKEIIEKENVKV 202
Query: 221 TEGGLAALVRLCNGDMRKALNILQSTHMAS--QQITEEAVYLCTGNPLPKDIEQISYWLL 278
+ A++ L GDMRK LNILQS M+S ITEEA+Y CTG P+P DIE + WLL
Sbjct: 203 DSKAMNAVLELGCGDMRKCLNILQSVSMSSIDNNITEEAIYKCTGYPMPSDIELMVDWLL 262
Query: 279 NESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFG 338
N + ++F+ IS++K +KGL+L DI+ + FV +I + + + +L++ L+DIEY LS G
Sbjct: 263 NSDYEEAFQNISDLKKKKGLSLNDIIATLQKFVVQIDLDNVILCKLLSHLSDIEYNLSIG 322
Query: 339 CNDKLQLGSIISTFTQAR 356
++KLQLGS++ F +R
Sbjct: 323 SSEKLQLGSLVGCFQLSR 340
>gi|392590080|gb|EIW79410.1| DNA replication factor [Coniophora puteana RWD-64-598 SS2]
Length = 345
Score = 370 bits (950), Expect = e-100, Method: Compositional matrix adjust.
Identities = 181/335 (54%), Positives = 238/335 (71%), Gaps = 4/335 (1%)
Query: 22 PKDNGKNVIV-SGTPPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLY 80
P + GK V G + ++ PWVEKYRP +L DV +H+DI TI+R +NRLPHLL Y
Sbjct: 9 PINKGKGKAVDGGLTVNGESLPWVEKYRPVTLDDVKSHKDITTTIERFIEKNRLPHLLFY 68
Query: 81 GPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKA 140
GPPGTGKTSTILAVAR++YG++Y ILELNASDDRGIDVVR+QI+ FA T++
Sbjct: 69 GPPGTGKTSTILAVARRIYGSEYRKQILELNASDDRGIDVVREQIKQFAETRTL---FAK 125
Query: 141 SVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPL 200
S KL++LDEAD MT+ AQ ALRRVIE+YTKN RF +ICN VNKI PA+QSRCTRFRF+PL
Sbjct: 126 SYKLIILDEADMMTQQAQAALRRVIEQYTKNVRFCIICNYVNKIAPAIQSRCTRFRFSPL 185
Query: 201 EPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYL 260
V +++ HV+EAE VT+ G AL++L GDMR+ALN+LQ+ H A I E VY
Sbjct: 186 PMAEVEKQIDHVVEAEDCKVTKDGKEALLKLSKGDMRRALNVLQACHAAYDSIGETEVYN 245
Query: 261 CTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDV 320
CTGNP P+DIE I +L++ F S++ I++MK +GLAL D++ +V +++
Sbjct: 246 CTGNPHPRDIESIVNSMLSDEFTTSYQMINQMKTERGLALQDLLSGAFEYVDTLELKPQA 305
Query: 321 RVRLMNDLADIEYRLSFGCNDKLQLGSIISTFTQA 355
RV L++ LA IEYRLS G ++K+QL +++ F A
Sbjct: 306 RVYLLDYLATIEYRLSTGASEKIQLSALLGAFKNA 340
>gi|449548327|gb|EMD39294.1| hypothetical protein CERSUDRAFT_152406 [Ceriporiopsis subvermispora
B]
Length = 357
Score = 369 bits (947), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 188/357 (52%), Positives = 246/357 (68%), Gaps = 9/357 (2%)
Query: 1 MAEAETVSLMDFDEDENQNLKPKDNGKNVIVSGTPP-DIKASPWVEKYRPQSLADVAAHR 59
MA E V +MD E K GK+ V D PWVEKYRP +L DV +H+
Sbjct: 1 MASDEDVQMMD---TETAWPTTKGKGKSKAVDANEHYDDDNLPWVEKYRPVTLDDVVSHK 57
Query: 60 DIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGID 119
DI TI++ +NRLPHLL YGPPGTGKTSTILAVAR++YG++Y ILELNASDDRGID
Sbjct: 58 DITSTIEKFIEKNRLPHLLFYGPPGTGKTSTILAVARRIYGSEYRKQILELNASDDRGID 117
Query: 120 VVRQQIQDFASTQS-FSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALIC 178
VVR+QI++FA T++ FS G K L++LDEAD MT AQ ALRRVIE+YTKN RF +IC
Sbjct: 118 VVREQIKNFAETRTLFSKGFK----LIILDEADMMTTAAQAALRRVIEQYTKNVRFCIIC 173
Query: 179 NQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRK 238
N VNKI+PA+QSRCTRFRF+PL V +RL+ VIE+EG+ +T+ G AL++L GDMR+
Sbjct: 174 NYVNKIVPAIQSRCTRFRFSPLPISEVEKRLQKVIESEGVKLTDDGKKALLKLSKGDMRR 233
Query: 239 ALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGL 298
ALN+LQ+ H A I E +Y CTGNP P DIE + +L++ F S K IS +K+ +GL
Sbjct: 234 ALNVLQACHAAYDLIGEAEIYNCTGNPHPSDIETVVNSMLSDDFTTSHKMISALKVERGL 293
Query: 299 ALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDKLQLGSIISTFTQA 355
AL D++ V ++ + + R+ L++ LA IE+RLS G N+K+QL +++ F A
Sbjct: 294 ALPDLINGVYEYIETVDFKPNARIYLLDILATIEHRLSTGANEKIQLTALLGAFKNA 350
>gi|346472797|gb|AEO36243.1| hypothetical protein [Amblyomma maculatum]
Length = 327
Score = 369 bits (947), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 182/320 (56%), Positives = 234/320 (73%), Gaps = 6/320 (1%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYG- 100
PWVEKYRPQ L D+ AH DI+ TI R E+RLPHLL YGPPGTGKTSTILA A+++Y
Sbjct: 11 PWVEKYRPQKLDDLIAHEDIISTIGRFIKEDRLPHLLFYGPPGTGKTSTILACAQQIYSP 70
Query: 101 AQYHNMILELNASDDRGIDVVRQQIQDFASTQS-FSFGVKASVKLVLLDEADAMTKDAQF 159
++ + +LELNASDDRGI +VR +I FAST++ F+ G K L++LDEADAMT DAQ
Sbjct: 71 KEFTSKVLELNASDDRGIGIVRGEILSFASTKTIFNTGFK----LIVLDEADAMTNDAQN 126
Query: 160 ALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLD 219
ALRRVIEK+T+N RF LICN ++KIIPALQSRCTRFRF PL ++ R+ HVI E L
Sbjct: 127 ALRRVIEKFTENARFCLICNYLSKIIPALQSRCTRFRFGPLSTAQMSPRIDHVITQERLT 186
Query: 220 VTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLN 279
VT G AL+ L GDMRKALNILQST MA ++ E VYLC G PL +DI I LLN
Sbjct: 187 VTADGKKALMDLAQGDMRKALNILQSTSMAFSEVNETNVYLCVGQPLKEDISDIVSTLLN 246
Query: 280 ESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGC 339
E F + IS++K+ KGLAL D++ +V ++V +I++P V++RL++ +A+IEYRL+ G
Sbjct: 247 EDFTYCYSHISKLKVGKGLALQDVLTQVHLYVHRIELPDQVKMRLIDKMAEIEYRLAAGT 306
Query: 340 NDKLQLGSIISTFTQARSAI 359
++K+QL S+IS F AR +
Sbjct: 307 SEKIQLSSLISAFQVARQMV 326
>gi|449265791|gb|EMC76929.1| Replication factor C subunit 5, partial [Columba livia]
Length = 299
Score = 369 bits (947), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 181/300 (60%), Positives = 231/300 (77%), Gaps = 4/300 (1%)
Query: 65 IDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA-QYHNMILELNASDDRGIDVVRQ 123
+ R SE+RLPHLLLYGPPGTGKTSTILA AR+LY ++ +M+LELNASDDRGID+VR
Sbjct: 3 VQRFISEDRLPHLLLYGPPGTGKTSTILACARQLYREREFGSMVLELNASDDRGIDIVRG 62
Query: 124 QIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNK 183
I FAST++ K KLV+LDEADAMT+DAQ ALRRVIEK+T+NTRF LICN ++K
Sbjct: 63 PILSFASTRTI---FKKGFKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSK 119
Query: 184 IIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNIL 243
IIPALQSRCTRFRF PL P + RL+HVI+ EG+DVTE G+ ALV L +GDMR+ALNIL
Sbjct: 120 IIPALQSRCTRFRFGPLTPELMVPRLQHVIQEEGVDVTEDGMKALVTLSSGDMRRALNIL 179
Query: 244 QSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDI 303
QST MA ++TEE VY CTG+PL DI I W+LN+ F+ ++++I+E+K KGLAL DI
Sbjct: 180 QSTTMAFGKVTEENVYTCTGHPLESDIANILDWMLNQDFSTAYRKITELKTLKGLALQDI 239
Query: 304 VREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDKLQLGSIISTFTQARSAIVAAA 363
+ E+ +FV ++ P +R++L+ LADIEYRL+ G ++K+QL S+I+ F R IVA A
Sbjct: 240 LTEIHLFVHRVDFPPSIRIQLLIKLADIEYRLAAGTSEKIQLSSLIAAFQVTRDLIVAEA 299
>gi|325186526|emb|CCA21065.1| replication factor C subunit 5 putative [Albugo laibachii Nc14]
Length = 354
Score = 369 bits (946), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 175/332 (52%), Positives = 241/332 (72%), Gaps = 5/332 (1%)
Query: 31 VSGTPPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTST 90
+S D + PWVEKYRP + D+ AH+ IV TI++L + +LPHLL YGPPGTGKTS
Sbjct: 22 ISSYARDTSSWPWVEKYRPSRMDDIIAHKGIVSTINQLVEKQKLPHLLFYGPPGTGKTSM 81
Query: 91 ILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQS-FSFGVKASVKLVLLDE 149
I+A+ARK+YG + +M+LELNASDDRGIDVVR QI++FA T+ FS G K L++LDE
Sbjct: 82 IIAIARKIYGKHFSSMVLELNASDDRGIDVVRNQIKEFAGTKKLFSSGAK----LIILDE 137
Query: 150 ADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERL 209
AD+MT DAQF+LRRVIEKYTK+TRF LICN V+KIIPALQSRC RFRFAPL V +R+
Sbjct: 138 ADSMTNDAQFSLRRVIEKYTKHTRFCLICNYVSKIIPALQSRCMRFRFAPLGVTQVGDRV 197
Query: 210 KHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKD 269
K + + E +D+T+GG AL++L GDMR+ LNILQ+ +A + EE VYLCTGNP+P+D
Sbjct: 198 KQIRDLEKIDLTDGGFDALMQLGKGDMRRILNILQAASLAYATVNEENVYLCTGNPVPED 257
Query: 270 IEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLA 329
I I + L N+SFA++ + ++M KG A DI++EV ++ +P+ + + ++LA
Sbjct: 258 IAAICHSLWNDSFAEAVSKCQAIQMTKGYATTDIMKEVYHNTTEVDLPAKCQHFIYDELA 317
Query: 330 DIEYRLSFGCNDKLQLGSIISTFTQARSAIVA 361
+E+RL+ G ++KLQL S++S + AR + +
Sbjct: 318 KLEHRLATGASEKLQLISLVSIYFMARGLLAS 349
>gi|363740218|ref|XP_003642280.1| PREDICTED: replication factor C subunit 5-like [Gallus gallus]
Length = 347
Score = 367 bits (943), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 189/344 (54%), Positives = 244/344 (70%), Gaps = 17/344 (4%)
Query: 21 KPKDNGKNVIVSGTPPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLY 80
+ + +G V + PP A P + RP L + R SE+RLPHLLLY
Sbjct: 20 RARGHGGAVREAPRPPSPHALP--QSLRPPLLP-----------VQRFISEDRLPHLLLY 66
Query: 81 GPPGTGKTSTILAVARKLYGA-QYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVK 139
GPPGTGKTSTILA AR+LY ++ +M+LELNASDDRGID+VR I FAST++ K
Sbjct: 67 GPPGTGKTSTILACARQLYREREFSSMVLELNASDDRGIDIVRGPILSFASTRTI---FK 123
Query: 140 ASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAP 199
KLV+LDEADAMT+DAQ ALRRVIEK+T+NTRF LICN ++KIIPALQSRCTRFRF P
Sbjct: 124 KGFKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGP 183
Query: 200 LEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVY 259
L P + RL+HVI+ EG+DV+E G+ ALV L +GDMR+ALNILQST MA ++TEE VY
Sbjct: 184 LTPELMVPRLQHVIQEEGVDVSEDGMKALVTLSSGDMRRALNILQSTSMAFGKVTEENVY 243
Query: 260 LCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSD 319
CTG+PL DI I W+LN+ F+ ++++I E+K KGLAL DI+ E+ +FV ++ P
Sbjct: 244 TCTGHPLKADIANILDWMLNQKFSTAYRKIMELKTLKGLALQDILTEIHLFVHRVDFPPS 303
Query: 320 VRVRLMNDLADIEYRLSFGCNDKLQLGSIISTFTQARSAIVAAA 363
VR++L+ +ADIEYRL+ G ++K+QL S+I+ F R IVA A
Sbjct: 304 VRIQLLIKMADIEYRLAAGTSEKVQLSSLIAAFQVTRDLIVAEA 347
>gi|336368487|gb|EGN96830.1| hypothetical protein SERLA73DRAFT_111563 [Serpula lacrymans var.
lacrymans S7.3]
gi|336381281|gb|EGO22433.1| hypothetical protein SERLADRAFT_357265 [Serpula lacrymans var.
lacrymans S7.9]
Length = 354
Score = 367 bits (941), Expect = 6e-99, Method: Compositional matrix adjust.
Identities = 184/350 (52%), Positives = 242/350 (69%), Gaps = 13/350 (3%)
Query: 14 EDENQNL-------KPKDNGKNVIVSGTPPDIKASPWVEKYRPQSLADVAAHRDIVDTID 66
EDE +++ P + GK V G P D + PWVEKYRP +L DV +H+DI TI+
Sbjct: 4 EDETRSMDVDIAAFSPIEKGKGRAV-GQPLDDEMLPWVEKYRPVTLDDVVSHKDITTTIE 62
Query: 67 RLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQ 126
+ +NRLPHLL YGPPGTGKTSTILAVAR++YG +Y ILELNASDDRGIDVVR+QI+
Sbjct: 63 KFIDKNRLPHLLFYGPPGTGKTSTILAVARRIYGPEYRKQILELNASDDRGIDVVREQIK 122
Query: 127 DFASTQS-FSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKII 185
FA T++ F+ G K L++LDEAD MT+ AQ ALRRVIE+YTKN RF +ICN VNKI
Sbjct: 123 QFAETRTLFARGFK----LIILDEADMMTQQAQAALRRVIEQYTKNVRFCIICNYVNKIA 178
Query: 186 PALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQS 245
PA+QSRCTRFRF+PL V V +R+ VIEAE + +TE G AL++L GDMR+ALN+LQ+
Sbjct: 179 PAIQSRCTRFRFSPLPIVEVEKRIGTVIEAEHVKLTEDGKKALLKLSKGDMRRALNVLQA 238
Query: 246 THMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVR 305
H A + E +Y CTGNP P DIE I +L++ F S++ IS MK +GLAL D++
Sbjct: 239 CHAAYDSVGETEIYNCTGNPHPSDIENIVNSMLSDEFTTSYQMISTMKTERGLALQDLIS 298
Query: 306 EVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDKLQLGSIISTFTQA 355
++ I+ R+ L++ LA E+RLS G ++K+QL +++ F A
Sbjct: 299 GAYEYIETIEFKPQARIYLLDYLATTEHRLSAGASEKIQLSAMLGAFKNA 348
>gi|170589810|ref|XP_001899666.1| Putative activator 1 36 kDa subunit [Brugia malayi]
gi|158592792|gb|EDP31388.1| Putative activator 1 36 kDa subunit, putative [Brugia malayi]
Length = 347
Score = 366 bits (940), Expect = 8e-99, Method: Compositional matrix adjust.
Identities = 176/325 (54%), Positives = 233/325 (71%), Gaps = 3/325 (0%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP SL ++ +H++I DT+ +L +ENRLPHLL YGPPGTGKTSTILA AR LY +
Sbjct: 16 PWVEKYRPASLTELVSHQEITDTLMKLINENRLPHLLFYGPPGTGKTSTILAAARMLYTS 75
Query: 102 -QYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASV--KLVLLDEADAMTKDAQ 158
Q +M+LELNASDDRGI +VR+QI +FA T + + S KL++LDEADAMTKDAQ
Sbjct: 76 KQLSSMVLELNASDDRGIGIVREQIINFAQTSTLNVDKNQSSVPKLIILDEADAMTKDAQ 135
Query: 159 FALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGL 218
ALRRVIEK+T N RF +ICN ++KIIPA+QSRCTR RFAPL + RL H+++ E L
Sbjct: 136 SALRRVIEKFTDNVRFCIICNYLSKIIPAIQSRCTRLRFAPLSNEQILPRLHHIVQVETL 195
Query: 219 DVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLL 278
VTE G AL+ L GDMR+ +NILQST MA + + E VY C G PLP D+E+I LL
Sbjct: 196 TVTEDGQKALLNLAEGDMRRVINILQSTAMAFKTVDEPNVYRCVGYPLPTDVEKIVKILL 255
Query: 279 NESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFG 338
N+S D++ +I E++ + AL DI+ + F+F++ +P ++ RL+ +ADIEY LS G
Sbjct: 256 NDSIEDAYTKIEEIRTERAFALSDILNSMHEFIFRLVVPPELLSRLLICMADIEYHLSQG 315
Query: 339 CNDKLQLGSIISTFTQARSAIVAAA 363
C+D+LQLG++I F R+ + A
Sbjct: 316 CSDRLQLGALIGAFINTRNELAKLA 340
>gi|402593971|gb|EJW87898.1| replication factor C 5 [Wuchereria bancrofti]
Length = 347
Score = 366 bits (939), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 178/325 (54%), Positives = 232/325 (71%), Gaps = 3/325 (0%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP SL ++ +H++I+DT+ +L +ENRLPHLL YGPPGTGKTSTILA AR LY
Sbjct: 16 PWVEKYRPASLTELVSHQEIIDTLMKLINENRLPHLLFYGPPGTGKTSTILAAARMLYTP 75
Query: 102 -QYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASV--KLVLLDEADAMTKDAQ 158
Q +M+LELNASDDRGI +VR+QI +FA T + + S KLV+LDEADAMTKDAQ
Sbjct: 76 KQLSSMVLELNASDDRGIGIVREQIINFAQTSTLNVDKNQSSVPKLVILDEADAMTKDAQ 135
Query: 159 FALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGL 218
ALRRVIEK+T N RF +ICN ++KIIPA+QSRCTR RFAPL + RL H++ E L
Sbjct: 136 SALRRVIEKFTDNVRFCIICNYLSKIIPAIQSRCTRLRFAPLSNEQILPRLHHIVRVESL 195
Query: 219 DVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLL 278
VTE G AL+ L GDMR+ +NILQST MA + + E VY C G PLP D+E+I LL
Sbjct: 196 TVTEDGQKALLNLAEGDMRRVINILQSTAMAFKTVDERNVYRCLGYPLPTDVEKIVKILL 255
Query: 279 NESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFG 338
N+S D++ RI E++ + AL DI+ + F+F++ +P ++ RL+ +ADIEY LS G
Sbjct: 256 NDSMEDAYTRIEEIRNERAFALSDILNSMHDFIFRLVVPPELLSRLLICMADIEYHLSQG 315
Query: 339 CNDKLQLGSIISTFTQARSAIVAAA 363
C+D+LQLG++I F R+ + A
Sbjct: 316 CSDRLQLGALIGAFINIRNELAKLA 340
>gi|380015701|ref|XP_003691836.1| PREDICTED: replication factor C subunit 5-like [Apis florea]
Length = 330
Score = 365 bits (938), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 176/329 (53%), Positives = 237/329 (72%), Gaps = 5/329 (1%)
Query: 30 IVSGTPPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTS 89
+++ P PWVEKYRP+ L D+ +H +I+ TI++ EN LPHLL YGPPGTGKTS
Sbjct: 1 MMTSKPTQSTNLPWVEKYRPKKLDDLISHEEIIKTINKFIDENLLPHLLFYGPPGTGKTS 60
Query: 90 TILAVARKLYG-AQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLD 148
TILA ARKLY AQ+++M+LE+NASDDRGI++VR QI FAST + ++ KL++LD
Sbjct: 61 TILACARKLYTPAQFNSMVLEMNASDDRGINIVRGQILSFASTGTM---YRSGFKLIILD 117
Query: 149 EADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTER 208
EADAMT DAQ ALRR+IEKYT N RF +ICN ++KIIPALQSRCT+FRF PL + R
Sbjct: 118 EADAMTNDAQNALRRIIEKYTDNVRFCIICNYLSKIIPALQSRCTKFRFGPLSIDQILPR 177
Query: 209 LKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPK 268
L +I+ E L+VTE G AL+ L GDMRK LN+LQST +A +TEE VY C G+PLP
Sbjct: 178 LDTIIKEENLNVTEDGKQALITLSGGDMRKVLNVLQSTWLAFGAVTEENVYSCVGHPLPI 237
Query: 269 DIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKI-KMPSDVRVRLMND 327
DI+ I WL NES+ + +I ++K++KGLAL DI+ E+ +F+ K+ + P + + L+
Sbjct: 238 DIKNIVNWLFNESYELCYCKIQDIKLKKGLALQDILTELHLFIIKVFEFPDSILIDLIIK 297
Query: 328 LADIEYRLSFGCNDKLQLGSIISTFTQAR 356
LA+IE R+S GC++ +QL +++S F AR
Sbjct: 298 LAEIEKRVSIGCSEAVQLNALVSAFQNAR 326
>gi|307191665|gb|EFN75139.1| Replication factor C subunit 5 [Harpegnathos saltator]
Length = 329
Score = 365 bits (936), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 181/317 (57%), Positives = 229/317 (72%), Gaps = 5/317 (1%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYG- 100
PWVEKYRP++L ++ +H I+ TI++ EN+LPHLLLYGPPGTGKTSTILA ARKLY
Sbjct: 12 PWVEKYRPKNLDELISHETIIKTINKFIDENQLPHLLLYGPPGTGKTSTILACARKLYTP 71
Query: 101 AQYHNMI-LELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQF 159
AQ+++M+ LELNASDDRGI +VR QI FAST + K++ KL++LDEADAMT DAQ
Sbjct: 72 AQFNSMVVLELNASDDRGIGIVRGQILSFASTGTM---YKSAFKLIILDEADAMTIDAQN 128
Query: 160 ALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLD 219
ALRR+IEKYT N RF +ICN ++KIIPALQSRCTRFRF PL + RL HVIEAE L+
Sbjct: 129 ALRRIIEKYTDNVRFCIICNYLSKIIPALQSRCTRFRFLPLAAEQIIPRLNHVIEAENLN 188
Query: 220 VTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLN 279
VTE G AL+ L GDMRK +++LQST A + E VY C G+PLP DI I WLLN
Sbjct: 189 VTEDGKQALMTLSGGDMRKVISVLQSTWFAYGIVNEGNVYNCVGHPLPSDIRNIVNWLLN 248
Query: 280 ESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGC 339
E + +K I ++K+ KGLAL DI+ E+ + V KI P + + L+ LA+IE RL+ GC
Sbjct: 249 EPYDTCYKNIQQLKLNKGLALQDILTEIHLCVIKIDFPDSIFIDLLCKLAEIEKRLASGC 308
Query: 340 NDKLQLGSIISTFTQAR 356
D +Q+ S+IS F + R
Sbjct: 309 RDAIQVNSLISAFYKIR 325
>gi|242211529|ref|XP_002471602.1| predicted protein [Postia placenta Mad-698-R]
gi|220729278|gb|EED83155.1| predicted protein [Postia placenta Mad-698-R]
Length = 350
Score = 365 bits (936), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 175/314 (55%), Positives = 224/314 (71%), Gaps = 3/314 (0%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP +L DV +H+DI TI++ +NRLPHLL YGPPGTGKTSTILAVAR++YG
Sbjct: 32 PWVEKYRPVTLDDVVSHKDITSTIEKFIEKNRLPHLLFYGPPGTGKTSTILAVARRIYGK 91
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFAL 161
Y ILELNASDDRGIDVVR+QI++FA T++ KL++LDEAD MT AQ AL
Sbjct: 92 DYRKQILELNASDDRGIDVVREQIKNFAETRTLFL---KGYKLIILDEADMMTTAAQAAL 148
Query: 162 RRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVT 221
RRVIE+YTKN RF +ICN VNKIIPA+QSRCTRFRF+PL V RL VIEAEG+ +T
Sbjct: 149 RRVIEQYTKNVRFCIICNYVNKIIPAIQSRCTRFRFSPLPITEVERRLSGVIEAEGVKLT 208
Query: 222 EGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNES 281
E G AL++L GDMR+ALN+LQ+ H A I E+ +Y CTGNP P DIE + +L++
Sbjct: 209 EDGKKALLKLSKGDMRRALNVLQACHAAYDLIGEDEIYNCTGNPHPTDIESVVNSMLSDD 268
Query: 282 FADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCND 341
F S+K IS +K+ +GLAL D++ ++ I R+ L++ LA E+RLS G N+
Sbjct: 269 FTTSYKMISALKVERGLALPDLINGAYEYIETIDFKPHARIYLLDFLATTEHRLSSGANE 328
Query: 342 KLQLGSIISTFTQA 355
K+QL +++ F A
Sbjct: 329 KIQLTALLGAFKNA 342
>gi|324511848|gb|ADY44927.1| Replication factor C subunit 5 [Ascaris suum]
Length = 341
Score = 363 bits (932), Expect = 7e-98, Method: Compositional matrix adjust.
Identities = 175/325 (53%), Positives = 234/325 (72%), Gaps = 3/325 (0%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP +L D+ +H +I+ T+ +L + RLPHLL YGPPGTGKTS IL AR ++
Sbjct: 13 PWVEKYRPATLDDLVSHEEIIATLAKLVKKRRLPHLLFYGPPGTGKTSAILVAARMMFTP 72
Query: 102 -QYHNMILELNASDDRGIDVVRQQIQDFASTQSFSF--GVKASVKLVLLDEADAMTKDAQ 158
Q +M+LELNASDDRGI +VR QI +FA T++ K+ +KL++LDEADAMTKDAQ
Sbjct: 73 KQLASMVLELNASDDRGIGIVRDQIMNFAQTKTLHVDENGKSHIKLIILDEADAMTKDAQ 132
Query: 159 FALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGL 218
ALRRVIEK+T+N RF +ICN ++KIIPA+QSRCTRFRFAPL+ + RL+H+ ++E L
Sbjct: 133 NALRRVIEKFTENVRFCIICNYLSKIIPAVQSRCTRFRFAPLKEEQILPRLRHIAKSESL 192
Query: 219 DVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLL 278
+TE G AL++L GDMR+ LNILQST MA +I EE+VYLC G PLP IE I LL
Sbjct: 193 KLTEDGERALMKLAGGDMRRVLNILQSTAMAFPKIDEESVYLCVGQPLPSVIEDIVRILL 252
Query: 279 NESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFG 338
N+SF D+F +I ++ AL DI+ + V+++ +PSDV L+ +A IEYRL+ G
Sbjct: 253 NDSFEDAFTKIEGIRCLHAFALSDILASMQDAVYQLDIPSDVTCLLIAQMAQIEYRLARG 312
Query: 339 CNDKLQLGSIISTFTQARSAIVAAA 363
C D++QL ++I+ F +ARSA+ A
Sbjct: 313 CTDRMQLAALIAAFVEARSALAKLA 337
>gi|281209635|gb|EFA83803.1| replication factor C subunit [Polysphondylium pallidum PN500]
Length = 347
Score = 363 bits (931), Expect = 8e-98, Method: Compositional matrix adjust.
Identities = 177/327 (54%), Positives = 230/327 (70%), Gaps = 6/327 (1%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP+ L+ + AH DI DT+ +L ++N LPHLL YGPPGTGKTSTI A+ARKLYG
Sbjct: 21 PWVEKYRPKDLSGLIAHEDITDTVSKLIAKNSLPHLLFYGPPGTGKTSTIQAIARKLYGE 80
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFAL 161
Y M+LELNASDDRGIDVVR+QI+ FAS+ F F KL++LDEAD+MT AQ AL
Sbjct: 81 SYSRMVLELNASDDRGIDVVREQIKTFASSM-FMFS-NYPYKLIILDEADSMTNPAQTAL 138
Query: 162 RRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVT 221
RRVIEKYT+ TRF +ICN V+KI+PALQSRCTRFRF+PL +T+R+K +IE E L V
Sbjct: 139 RRVIEKYTRTTRFCMICNYVSKILPALQSRCTRFRFSPLPRSAITKRMKEIIECESLKVN 198
Query: 222 EGGLAALVRLCNGDMRKALNILQSTHMA---SQQITEEAVYLCTGNPLPKDIEQISYWLL 278
+ L +++ L GDMRK LNILQS M+ I ++ +Y CTG PLP DI++I W L
Sbjct: 199 DDALNSIITLSEGDMRKCLNILQSASMSIDVGTTIDKDTIYRCTGQPLPTDIKKILMWSL 258
Query: 279 NESFADSFKRISEMKMRKGLALVDIVREVTMFVFKI-KMPSDVRVRLMNDLADIEYRLSF 337
N+S+ ++ I E+K KGL+L DI++E+ K+ + L+ +L+DIEY LSF
Sbjct: 259 NQSYIEALNNILELKKEKGLSLTDIIKEIHFMTLKVPNIGGPALWNLVKELSDIEYNLSF 318
Query: 338 GCNDKLQLGSIISTFTQARSAIVAAAK 364
G ++KLQLGS++ +F R V K
Sbjct: 319 GASEKLQLGSMLGSFQVIRDEAVKNNK 345
>gi|169849253|ref|XP_001831330.1| DNA replication factor [Coprinopsis cinerea okayama7#130]
gi|116507598|gb|EAU90493.1| DNA replication factor [Coprinopsis cinerea okayama7#130]
Length = 347
Score = 362 bits (930), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 181/336 (53%), Positives = 239/336 (71%), Gaps = 8/336 (2%)
Query: 21 KPKDNGKNVIVSGTPPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLY 80
K K GK VS ++ PWVEKYRP SL DV +H+DI TIDR +NRLPHLL Y
Sbjct: 11 KNKGKGKAADVS---EEVDNLPWVEKYRPVSLEDVVSHQDITTTIDRFIEKNRLPHLLFY 67
Query: 81 GPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQS-FSFGVK 139
GPPGTGKTSTILAVAR++YG+ Y ILELNASDDRGIDVVR+Q++ FA T++ FS G K
Sbjct: 68 GPPGTGKTSTILAVARRIYGSDYKKQILELNASDDRGIDVVREQVKQFAETRTLFSKGYK 127
Query: 140 ASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAP 199
L++LDEAD MT+ AQ ALRRVIE+YTKN RF +ICN VNKI PA+QSRCTRFRF+P
Sbjct: 128 ----LIILDEADMMTQQAQAALRRVIEQYTKNVRFCIICNYVNKIAPAIQSRCTRFRFSP 183
Query: 200 LEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVY 259
L V +++ V+EAE + +T G AL++L GDMR+ALN+LQ+ H A I+E VY
Sbjct: 184 LPIAEVEKQVNRVVEAENVQLTPEGKQALLKLSKGDMRRALNVLQACHAAYDVISESEVY 243
Query: 260 LCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSD 319
CTG+P P+DIE I +L++ F S++ IS++K +GLAL D++ ++ I++ +
Sbjct: 244 NCTGHPHPQDIEAIVNSMLSDEFTTSYQMISKLKTERGLALQDLIAGAYEYLETIEIKPN 303
Query: 320 VRVRLMNDLADIEYRLSFGCNDKLQLGSIISTFTQA 355
RV +++ LA E+RLS G N+K+QL +++S F A
Sbjct: 304 ARVYVLDLLATTEHRLSTGGNEKMQLTALLSAFKGA 339
>gi|389745640|gb|EIM86821.1| P-loop containing nucleoside triphosphate hydrolase protein
[Stereum hirsutum FP-91666 SS1]
Length = 358
Score = 362 bits (930), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 176/315 (55%), Positives = 224/315 (71%), Gaps = 5/315 (1%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP SL DV +H+DI TI++ +NRLPHLL YGPPGTGKTSTILAVAR++YGA
Sbjct: 38 PWVEKYRPNSLDDVVSHKDITSTIEKFIEKNRLPHLLFYGPPGTGKTSTILAVARRIYGA 97
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQS-FSFGVKASVKLVLLDEADAMTKDAQFA 160
Y LELNASDDRGIDVVR+QI+ FA T++ FS G K L++LDEAD MT AQ A
Sbjct: 98 GYKKQTLELNASDDRGIDVVREQIKQFAETRTLFSKGYK----LIILDEADMMTTAAQAA 153
Query: 161 LRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDV 220
LRRVIE+YTKN RF +ICN VNKI+PA+QSRCTRFRF+PL V +R+ HV+ AEG+ +
Sbjct: 154 LRRVIEQYTKNVRFCIICNYVNKIVPAIQSRCTRFRFSPLPMKEVEKRVDHVVAAEGVKL 213
Query: 221 TEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNE 280
TE G AL++L GDMR+ALNILQ+ H A Q E VY CTG+P P DIE + ++ +
Sbjct: 214 TEDGKKALLKLSKGDMRRALNILQACHAAYDQTGETEVYNCTGSPEPADIETVVNSMITD 273
Query: 281 SFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCN 340
F S+ IS +K +GLAL D++ ++ I P RV L++ LA E+RLS G +
Sbjct: 274 EFTTSYHMISTLKTERGLALQDLLIGAYEYIEGIDFPPAARVYLLDHLATTEHRLSTGGS 333
Query: 341 DKLQLGSIISTFTQA 355
+K+QL +++ F A
Sbjct: 334 EKIQLTALLGAFKNA 348
>gi|403415842|emb|CCM02542.1| predicted protein [Fibroporia radiculosa]
Length = 358
Score = 362 bits (929), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 185/354 (52%), Positives = 241/354 (68%), Gaps = 12/354 (3%)
Query: 10 MDFDEDEN---QNLKP-----KDNGKNVIVSGTPPDIKASPWVEKYRPQSLADVAAHRDI 61
MD DED + P K GK V ++G DI+ PWVEKYRP S+ D+ +H+DI
Sbjct: 1 MDTDEDVQMIESEITPVPSEAKGKGKAVELNGGH-DIENLPWVEKYRPVSMDDIVSHKDI 59
Query: 62 VDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVV 121
TI++ +N+LPHLL YGPPGTGKTSTILAVAR++YG Y ILELNASDDRGIDVV
Sbjct: 60 TSTIEKFIEKNQLPHLLFYGPPGTGKTSTILAVARRIYGNDYRKQILELNASDDRGIDVV 119
Query: 122 RQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQV 181
R+QI++FA T++ KL++LDEAD MT AQ ALRRVIE+YTKN RF +ICN V
Sbjct: 120 REQIKNFAETRTLFL---KGYKLIILDEADMMTTAAQAALRRVIEQYTKNVRFCIICNYV 176
Query: 182 NKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALN 241
NKIIPA+QSRCTRFRF+PL V RL VIEAEG+ +TE G AL++L GDMR+ALN
Sbjct: 177 NKIIPAIQSRCTRFRFSPLPIPEVERRLNSVIEAEGVKLTEDGKKALLKLSKGDMRRALN 236
Query: 242 ILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALV 301
+LQ+ H A I E +Y CTG+P P DIE + +L++ F S+K IS +K+ +GLAL
Sbjct: 237 VLQACHAAFDLIGEAQIYDCTGSPHPSDIETVVNSMLSDDFTTSYKMISALKVERGLALP 296
Query: 302 DIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDKLQLGSIISTFTQA 355
D++ ++ I VRV +++ LA E+RLS G ++K+QL +++ F A
Sbjct: 297 DLINGAYEYIETIDFKPHVRVYVLDFLATTEHRLSTGASEKIQLTALLGAFKNA 350
>gi|114050971|ref|NP_001040148.1| replication factor C (activator 1) 5 [Bombyx mori]
gi|87248211|gb|ABD36158.1| replication factor C (activator 1) 5 [Bombyx mori]
Length = 334
Score = 362 bits (929), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 174/320 (54%), Positives = 237/320 (74%), Gaps = 5/320 (1%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP+ L D+ +H DI+ TI++ EN+LPHLL YGPPGTGKTSTILA A+++Y
Sbjct: 11 PWVEKYRPKRLDDLVSHDDIIKTINQFMKENQLPHLLFYGPPGTGKTSTILACAKQMYTP 70
Query: 102 Q-YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFA 160
Q + +M+LELNASDDRGI +VR QI FAST++ KA KL++LDEADAMT DAQ A
Sbjct: 71 QQFSSMVLELNASDDRGIGIVRGQILSFASTRTI---FKAGPKLIILDEADAMTNDAQNA 127
Query: 161 LRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDV 220
LRR+IEKYT+N RF +ICN + KIIPALQSRCTRFRFAPL+ + RL+ ++ EG+ +
Sbjct: 128 LRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKM 187
Query: 221 TEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNE 280
+EGG+ AL+ L GDMRK LN LQST +A + +TE+ VY C G+PL DI+ I WLLNE
Sbjct: 188 SEGGMKALLTLSGGDMRKVLNTLQSTWLAYRDVTEDNVYTCVGHPLRADIDSILNWLLNE 247
Query: 281 S-FADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGC 339
+ F+ FK I ++K+ KGLAL DI+ EV + ++K+P +V V L+ ++D E RL+ G
Sbjct: 248 NDFSACFKSIQDLKIAKGLALSDILAEVHTIIQRVKLPPEVLVSLLIKMSDAEARLASGS 307
Query: 340 NDKLQLGSIISTFTQARSAI 359
+++++L ++I++F AR +
Sbjct: 308 SERVELAALIASFQIARDQV 327
>gi|393222049|gb|EJD07533.1| P-loop containing nucleoside triphosphate hydrolase protein
[Fomitiporia mediterranea MF3/22]
Length = 348
Score = 362 bits (928), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 182/344 (52%), Positives = 234/344 (68%), Gaps = 7/344 (2%)
Query: 13 DEDENQNLKPKDNGKNVIVSGTPPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSEN 72
D D + K GK T D PWVEKYRP +L DV +H+DI TI++ +N
Sbjct: 3 DADATHSFNFKGKGKETYAEYTQDD--NLPWVEKYRPVTLDDVVSHKDITSTIEKFIEKN 60
Query: 73 RLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQ 132
RLPHLL YGPPGTGKTSTILAVAR++YG Y ILELNASDDRGIDVVR+Q++ FA T+
Sbjct: 61 RLPHLLFYGPPGTGKTSTILAVARRIYGPDYRKQILELNASDDRGIDVVREQVKQFAETR 120
Query: 133 S-FSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSR 191
+ FS G K L++LDEAD MT+ AQ ALRRVIE+YTKN RF +ICN VNKI PA+QSR
Sbjct: 121 TLFSKGFK----LIILDEADMMTQAAQAALRRVIEQYTKNVRFCIICNYVNKITPAVQSR 176
Query: 192 CTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQ 251
CTRFRF+PL V RL+ VIEAE + +T G AL++L GDMR+ALN+LQ+ H A
Sbjct: 177 CTRFRFSPLPIKEVERRLEGVIEAESVKLTPDGKDALLKLSKGDMRRALNVLQACHAAYD 236
Query: 252 QITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFV 311
I E +Y CTG+P PKDIE + +L + F S++ IS +K+ +GLAL D++ ++
Sbjct: 237 VIGETEIYNCTGSPQPKDIETVVTSMLGDEFTTSYEMISALKIERGLALQDLITGAYDYI 296
Query: 312 FKIKMPSDVRVRLMNDLADIEYRLSFGCNDKLQLGSIISTFTQA 355
I+ S RV L++ LA EYRLS G ++K+QL +++ F A
Sbjct: 297 ETIEFGSQARVYLLDQLASTEYRLSTGGSEKIQLTALLGAFKNA 340
>gi|392565350|gb|EIW58527.1| P-loop containing nucleoside triphosphate hydrolase protein
[Trametes versicolor FP-101664 SS1]
Length = 353
Score = 362 bits (928), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 185/349 (53%), Positives = 237/349 (67%), Gaps = 7/349 (2%)
Query: 10 MDFDEDEN--QNLKPKDNGKNVIVSGTPPDIKASPWVEKYRPQSLADVAAHRDIVDTIDR 67
MD +E N K K GK + D++ PWVEKYRP +L DV +H DI TI +
Sbjct: 1 MDDNEPINWPNTTKGKGKGKATQHEDSAYDVENLPWVEKYRPVTLDDVVSHHDITSTIVK 60
Query: 68 LTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQD 127
+NRLPHLL YGPPGTGKTSTILAVAR++YG Y ILELNASDDRGIDVVR+QI++
Sbjct: 61 FIEKNRLPHLLFYGPPGTGKTSTILAVARRIYGNDYRKQILELNASDDRGIDVVREQIKN 120
Query: 128 FASTQS-FSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIP 186
FA T++ F+ G K L++LDEAD MT AQ ALRRVIE+YTKN RF +ICN VNKIIP
Sbjct: 121 FAETRTLFAKGFK----LIILDEADMMTTAAQSALRRVIEQYTKNVRFCIICNYVNKIIP 176
Query: 187 ALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQST 246
A+QSRCTRFRF+PL V +RL VIEAEG+ +TE G AL++L GDMR+ALN+LQ+
Sbjct: 177 AIQSRCTRFRFSPLPITEVEKRLNSVIEAEGVKLTEDGKKALLKLSKGDMRRALNVLQAC 236
Query: 247 HMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVRE 306
H A + E +Y CTGNP P DIE I +L + F S+ IS +K +GLAL D++
Sbjct: 237 HAAYDRSGEAEIYNCTGNPHPSDIETIVNSMLQDDFTTSYNLISALKTERGLALPDLING 296
Query: 307 VTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDKLQLGSIISTFTQA 355
++ I+ + R+ L++ LA E+RLS G N+K+QL +++ F A
Sbjct: 297 AYEYLQTIQFKPNARIYLLDFLATTEHRLSTGGNEKIQLTALLGAFKNA 345
>gi|195434144|ref|XP_002065063.1| GK15259 [Drosophila willistoni]
gi|194161148|gb|EDW76049.1| GK15259 [Drosophila willistoni]
Length = 331
Score = 361 bits (927), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 181/331 (54%), Positives = 237/331 (71%), Gaps = 6/331 (1%)
Query: 31 VSGTPPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTST 90
+S P I+ PWVEKYRP +L D+ +H +IV TI+R + +LPHLL YGPPGTGKTST
Sbjct: 1 MSDNGPAIRI-PWVEKYRPNNLEDLISHEEIVSTINRFIGQKQLPHLLFYGPPGTGKTST 59
Query: 91 ILAVARKLYG-AQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDE 149
ILA AR+LY AQ+ +M+LELNASDDRGI +VR QI +FAST++ G + KL++LDE
Sbjct: 60 ILACARQLYTPAQFKSMVLELNASDDRGIGIVRGQILNFASTRTIFCG---TFKLIILDE 116
Query: 150 ADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERL 209
ADAMT DAQ ALRR+IEKYT+N RF +ICN ++KIIPALQSRCTRFRFAPL P + RL
Sbjct: 117 ADAMTNDAQNALRRIIEKYTENVRFCVICNYLSKIIPALQSRCTRFRFAPLSPEQMLPRL 176
Query: 210 KHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKD 269
++EAE + +T+ G AL+ L GDMRK LN+LQST MA ++ E VY+C G PL +D
Sbjct: 177 DKIVEAEAVTITDDGKKALLTLAKGDMRKVLNVLQSTVMAFNEVNENNVYMCVGYPLKQD 236
Query: 270 IEQISYWLLN-ESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDL 328
EQI LL+ ESF +FK I + K R+GLAL DI+ E+ +FV ++++P V +L+ L
Sbjct: 237 TEQILNALLSGESFKAAFKTIEDAKSRRGLALEDILTELHLFVMRLELPMSVMNKLIIKL 296
Query: 329 ADIEYRLSFGCNDKLQLGSIISTFTQARSAI 359
A IE RLS GC + Q+ +++S F R +
Sbjct: 297 AQIEERLSKGCTEGAQIAALVSAFFICRDMV 327
>gi|312069831|ref|XP_003137865.1| replication factor C subunit 3 [Loa loa]
gi|307766973|gb|EFO26207.1| replication factor C subunit 3 [Loa loa]
Length = 354
Score = 361 bits (927), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 174/325 (53%), Positives = 234/325 (72%), Gaps = 3/325 (0%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP SL +V +H +I +T+ +L +ENRLPHLL YGPPGTGKTSTILA A+ +Y
Sbjct: 16 PWVEKYRPVSLTEVVSHGEITETLMKLINENRLPHLLFYGPPGTGKTSTILAAAKMMYAP 75
Query: 102 -QYHNMILELNASDDRGIDVVRQQIQDFASTQSFSF--GVKASVKLVLLDEADAMTKDAQ 158
Q +M+LELNASDDRGI +VR+QI +FA T + S K+ KL++LDEADAMTKDAQ
Sbjct: 76 KQLSSMVLELNASDDRGIGIVREQIINFAQTSTLSMDKNQKSMPKLIVLDEADAMTKDAQ 135
Query: 159 FALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGL 218
ALRRVIEK+T N RF +ICN ++KIIPA+QSRCTR RFAPL + RL ++++AE L
Sbjct: 136 SALRRVIEKFTDNVRFCIICNYLSKIIPAIQSRCTRLRFAPLPNEQILPRLHYIVQAESL 195
Query: 219 DVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLL 278
+T+ G AL+ L GDMR+ +NILQST MA + + E +VY C G PLP D+E+I LL
Sbjct: 196 TITKDGQNALLNLAEGDMRRIINILQSTAMAFKTVDEWSVYQCVGYPLPNDVEKIVRILL 255
Query: 279 NESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFG 338
N+S D++ +I E++ + AL DI+ + F+F++ +P ++ RL+ +ADIEY LS G
Sbjct: 256 NDSIEDAYTKIEEIRSERAFALSDILNSMHDFIFRLVIPPELLSRLLVCMADIEYHLSQG 315
Query: 339 CNDKLQLGSIISTFTQARSAIVAAA 363
C+D+LQLG++I F RS + A
Sbjct: 316 CSDRLQLGALIGAFINIRSELAKLA 340
>gi|358059664|dbj|GAA94596.1| hypothetical protein E5Q_01248 [Mixia osmundae IAM 14324]
Length = 414
Score = 360 bits (924), Expect = 5e-97, Method: Compositional matrix adjust.
Identities = 184/385 (47%), Positives = 250/385 (64%), Gaps = 40/385 (10%)
Query: 7 VSLMDFDEDENQNLKPKDNGKNVIVSGTPP------------------DIKASPWVEKYR 48
V L + DE ++ P ++V + PP ++ + PWVEKYR
Sbjct: 26 VQLGEHDEISDEEHHPHHRDEDVEMDAPPPLAYGIDKGKAKQEPVEAHELDSLPWVEKYR 85
Query: 49 PQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYG-------- 100
P +L DV +H+DIV TID+ S NRLPHLL YGPPGTGKTSTILAVARK+YG
Sbjct: 86 PATLDDVVSHKDIVSTIDKFISLNRLPHLLFYGPPGTGKTSTILAVARKIYGGTGNSIRG 145
Query: 101 ---------AQYHNMILELNASDDRGIDVVRQQIQDFASTQS-FSFGVKASVKLVLLDEA 150
+ N +LELNASDDRGIDVVR QI++FAST+ FS G K L++LDEA
Sbjct: 146 GVSGKGKEGSSMRNNVLELNASDDRGIDVVRDQIKNFASTRMIFSSGYK----LIILDEA 201
Query: 151 DAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLK 210
D MT AQ ALRRVIE+YTKN RF +ICN VN+IIPA+QSRCTRFRF PLE V R++
Sbjct: 202 DMMTTTAQNALRRVIEQYTKNVRFCIICNYVNRIIPAVQSRCTRFRFGPLETTEVDRRIQ 261
Query: 211 HVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDI 270
HV++AE +++T+ G AL++L GDMR+ALN+LQ+ H A + E A+Y CTGNP P DI
Sbjct: 262 HVVDAESVNLTQDGREALLKLSKGDMRRALNVLQACHSAYPVVDEGAIYACTGNPHPADI 321
Query: 271 EQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLAD 330
+++ ++++ F +++R+ +K KGLAL DI+ + + + MP R+ L++ LA
Sbjct: 322 DEMVTSMMSDEFQTAYQRVVAIKTDKGLALQDIIAGLGEALSGLDMPPHARIYLLDHLAQ 381
Query: 331 IEYRLSFGCNDKLQLGSIISTFTQA 355
IE+RLS G ++KLQ+ +++ F A
Sbjct: 382 IEHRLSTGGSEKLQMTALLGAFQNA 406
>gi|353238813|emb|CCA70747.1| probable RFC3-DNA replication factor C, 40 kDa subunit
[Piriformospora indica DSM 11827]
Length = 346
Score = 360 bits (924), Expect = 6e-97, Method: Compositional matrix adjust.
Identities = 176/312 (56%), Positives = 228/312 (73%), Gaps = 5/312 (1%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP +L DV +H+DI TI++ +NRLPHLL YGPPGTGKTSTI+AVAR+LYGA
Sbjct: 29 PWVEKYRPITLDDVVSHKDITTTIEQFIQKNRLPHLLFYGPPGTGKTSTIIAVARRLYGA 88
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKA-SVKLVLLDEADAMTKDAQFA 160
Y ILELNASDDRGIDVVR QI+ FA T+ GV A KL++LDEAD MT+ AQ A
Sbjct: 89 NYKKQILELNASDDRGIDVVRDQIKGFAETR----GVFAKGFKLIILDEADMMTQAAQAA 144
Query: 161 LRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDV 220
LRRVIE+YT+N RF +ICN VNKI PA+QSRCTRFRF+PL V +RL+ VIE EG+ V
Sbjct: 145 LRRVIEQYTRNVRFCIICNYVNKITPAIQSRCTRFRFSPLPVSEVEKRLQTVIENEGVKV 204
Query: 221 TEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNE 280
+ G AL++L GDMR+ALN+LQ+ H A EEA+Y CTGNP PKDIE + ++++
Sbjct: 205 SPEGKEALLKLSRGDMRRALNVLQACHAAYDITDEEAIYTCTGNPHPKDIENVVNSMMSQ 264
Query: 281 SFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCN 340
F + I+ +K +GLAL D++ +V ++++P RV L++ LA IE+RLS G +
Sbjct: 265 EFGTCYHMINSLKTERGLALQDLISGAFDYVQELELPPHSRVYLLDQLATIEHRLSTGGS 324
Query: 341 DKLQLGSIISTF 352
+KLQL ++I+ F
Sbjct: 325 EKLQLTALIAAF 336
>gi|409081372|gb|EKM81731.1| hypothetical protein AGABI1DRAFT_35783 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 344
Score = 360 bits (923), Expect = 9e-97, Method: Compositional matrix adjust.
Identities = 179/340 (52%), Positives = 234/340 (68%), Gaps = 5/340 (1%)
Query: 17 NQNLKPKDNGKNVIVSGTPPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPH 76
+ L NGK V D ++ PWVEKYRP +L DV +H+DI TI+R NRLPH
Sbjct: 2 SDTLPTPSNGKGKEVDTGTADAESLPWVEKYRPVTLDDVVSHKDITSTIERFIERNRLPH 61
Query: 77 LLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQS-FS 135
LL YGPPGTGKTSTILAVAR++YG Y ILELNASDDRGIDVVR+QI+ FA T++ FS
Sbjct: 62 LLFYGPPGTGKTSTILAVARRIYGTSYKKQILELNASDDRGIDVVREQIKQFAETRTLFS 121
Query: 136 FGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRF 195
G K L++LDEAD MT+ AQ ALRRVIE++TKN RF +ICN VNKI PA+QSRCTRF
Sbjct: 122 KGFK----LIILDEADMMTQAAQAALRRVIEQFTKNVRFCIICNYVNKITPAIQSRCTRF 177
Query: 196 RFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITE 255
RF+PL V +R+ V+EAE + +T G AL++L GDMR+ALN+LQ+ H A I E
Sbjct: 178 RFSPLPMTEVEKRVDMVVEAENVPLTTEGKNALLKLSKGDMRRALNVLQACHAAYDIIGE 237
Query: 256 EAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIK 315
+Y CTGNP P DIE I +L++ F S++ IS+MK +GLAL D++ ++ I+
Sbjct: 238 SEIYTCTGNPHPSDIEIIVNSMLSDEFTASYQMISKMKTERGLALQDLLTGAFDYIDTIE 297
Query: 316 MPSDVRVRLMNDLADIEYRLSFGCNDKLQLGSIISTFTQA 355
+ R+ L++ LA E+RLS G ++K+QL +++ F A
Sbjct: 298 LKPHARIYLLDHLASTEHRLSTGGSEKIQLTALLGAFKTA 337
>gi|426196606|gb|EKV46534.1| hypothetical protein AGABI2DRAFT_71819 [Agaricus bisporus var.
bisporus H97]
Length = 344
Score = 358 bits (919), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 178/332 (53%), Positives = 232/332 (69%), Gaps = 5/332 (1%)
Query: 25 NGKNVIVSGTPPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPG 84
NGK V D ++ PWVEKYRP +L DV +H+DI TI+R NRLPHLL YGPPG
Sbjct: 10 NGKGKEVDTGNADAESLPWVEKYRPVTLDDVVSHKDITSTIERFIERNRLPHLLFYGPPG 69
Query: 85 TGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQS-FSFGVKASVK 143
TGKTSTILAVAR++YG Y ILELNASDDRGIDVVR+QI+ FA T++ FS G K
Sbjct: 70 TGKTSTILAVARRIYGNSYKKQILELNASDDRGIDVVREQIKQFAETRTLFSKGFK---- 125
Query: 144 LVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPV 203
L++LDEAD MT+ AQ ALRRVIE++TKN RF +ICN VNKI PA+QSRCTRFRF+PL
Sbjct: 126 LIILDEADMMTQAAQAALRRVIEQFTKNVRFCIICNYVNKITPAIQSRCTRFRFSPLPMT 185
Query: 204 HVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTG 263
V +R+ V+EAE + +T G AL++L GDMR+ALN+LQ+ H A I E +Y CTG
Sbjct: 186 EVEKRVDMVVEAENVPLTTEGKNALLKLSKGDMRRALNVLQACHAAYDIIGESEIYTCTG 245
Query: 264 NPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVR 323
NP P DIE I +L++ F S++ IS+MK +GLAL D++ ++ I++ R+
Sbjct: 246 NPHPSDIEIIVNSMLSDEFTASYQMISKMKTERGLALQDLLTGAFDYIDTIELKPHARIY 305
Query: 324 LMNDLADIEYRLSFGCNDKLQLGSIISTFTQA 355
L++ LA E+RLS G ++K+QL +++ F A
Sbjct: 306 LLDHLASTEHRLSTGGSEKIQLTALLGAFKTA 337
>gi|427798817|gb|JAA64860.1| Putative replication factor c activator 1 5, partial [Rhipicephalus
pulchellus]
Length = 314
Score = 357 bits (916), Expect = 5e-96, Method: Compositional matrix adjust.
Identities = 176/310 (56%), Positives = 230/310 (74%), Gaps = 6/310 (1%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYG- 100
PWVEKYRPQ L D+ AH DI+ TI R E++LPHLL YGPPGTGKTSTILA A+++Y
Sbjct: 9 PWVEKYRPQKLDDLIAHEDIISTIGRFIKEDKLPHLLFYGPPGTGKTSTILACAQQIYSP 68
Query: 101 AQYHNMILELNASDDRGIDVVRQQIQDFASTQS-FSFGVKASVKLVLLDEADAMTKDAQF 159
++ + +LELNASDDRGI +VR +I FAST++ F+ G K L++LDEADAMT DAQ
Sbjct: 69 KEFTSKVLELNASDDRGIGIVRGEILSFASTKTIFNTGFK----LIVLDEADAMTNDAQN 124
Query: 160 ALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLD 219
ALRRVIEK+T+N RF LICN ++KIIPALQSRCTRFRF PL ++ R+ HVI E L
Sbjct: 125 ALRRVIEKFTENARFCLICNYLSKIIPALQSRCTRFRFGPLTAAQMSPRIDHVITQERLT 184
Query: 220 VTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLN 279
VT G AL+ L GDMRKALNILQST MA ++ E VYLC G+PL +DI I LLN
Sbjct: 185 VTADGKKALMDLAQGDMRKALNILQSTSMAFDEVNETNVYLCVGHPLKEDISDIVSTLLN 244
Query: 280 ESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGC 339
E F S+ I+++K+ KGLAL D++ +V ++V +I++P V++ L++ +A+IEYRL+ G
Sbjct: 245 EDFEYSYNHINKLKVGKGLALQDVLTQVHLYVHRIELPDKVKMYLIDKMAEIEYRLAAGT 304
Query: 340 NDKLQLGSII 349
++K+QL S+I
Sbjct: 305 SEKIQLSSLI 314
>gi|302687482|ref|XP_003033421.1| hypothetical protein SCHCODRAFT_54371 [Schizophyllum commune H4-8]
gi|300107115|gb|EFI98518.1| hypothetical protein SCHCODRAFT_54371 [Schizophyllum commune H4-8]
Length = 343
Score = 357 bits (916), Expect = 5e-96, Method: Compositional matrix adjust.
Identities = 176/322 (54%), Positives = 229/322 (71%), Gaps = 5/322 (1%)
Query: 35 PPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAV 94
P D + PWVEKYRP +L DV +H+DI TID+ +NRLPHLL YGPPGTGKTSTILAV
Sbjct: 20 PYDDDSLPWVEKYRPVTLDDVVSHKDITTTIDKFIEKNRLPHLLFYGPPGTGKTSTILAV 79
Query: 95 ARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQS-FSFGVKASVKLVLLDEADAM 153
AR++YG +Y ILELNASDDRGIDVVR+QI+ FA T++ FS G K LV+LDEAD M
Sbjct: 80 ARRIYGPEYRKQILELNASDDRGIDVVREQIKQFAETRTLFSKGFK----LVILDEADMM 135
Query: 154 TKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVI 213
T+ AQ ALRRVIE+YT+N RF +ICN V KI PA+QSRCTRFRF+PL V R+ VI
Sbjct: 136 TQAAQAALRRVIEQYTRNVRFCIICNYVGKIAPAIQSRCTRFRFSPLPIKEVERRVDLVI 195
Query: 214 EAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQI 273
EAEG+ +T G AAL+RL GDMR+ LN+LQ+ + A ++ITE VY CTG P P DIE I
Sbjct: 196 EAEGVTITPDGKAALLRLARGDMRRVLNVLQACYAAYEKITENEVYACTGAPHPADIETI 255
Query: 274 SYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEY 333
+L + F +++ IS+MK +GLAL D+ ++ I++ R+ L++ LA E+
Sbjct: 256 VNSMLGDEFTTAYEMISKMKTERGLALQDLTAGAFDYIDTIELKPHARIYLLDHLATTEH 315
Query: 334 RLSFGCNDKLQLGSIISTFTQA 355
RLS G ++K+Q+ +++ F A
Sbjct: 316 RLSTGGSEKIQMTALLGAFKNA 337
>gi|393240465|gb|EJD47991.1| P-loop containing nucleoside triphosphate hydrolase protein
[Auricularia delicata TFB-10046 SS5]
Length = 348
Score = 357 bits (915), Expect = 6e-96, Method: Compositional matrix adjust.
Identities = 175/330 (53%), Positives = 229/330 (69%), Gaps = 3/330 (0%)
Query: 23 KDNGKNVIVSGTPPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGP 82
K GK V D + PWVEKYRP +L+DV +H I TI+ +NRLPHLL YGP
Sbjct: 12 KGKGKAVDPPKPAYDPENLPWVEKYRPVALSDVVSHDGITTTIENFIEKNRLPHLLFYGP 71
Query: 83 PGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASV 142
PGTGKTSTILAVAR++YG Y ILELNASDDRGIDVVR+QI+ FA T++ + S
Sbjct: 72 PGTGKTSTILAVARRIYGNDYKRQILELNASDDRGIDVVREQIKQFAETRTL---FRRSF 128
Query: 143 KLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEP 202
KL++LDEAD MT+ AQ ALRR+IE+YTKN RF +ICN VNKI PA+QSRCTRFRF+PL
Sbjct: 129 KLIILDEADMMTQAAQSALRRIIEQYTKNVRFCIICNYVNKIAPAIQSRCTRFRFSPLPI 188
Query: 203 VHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCT 262
V R++HVIEAE + + GL AL++L GDMR+ALNILQ+ H A + TE +Y CT
Sbjct: 189 QDVERRVRHVIEAEDVKIEPDGLDALLKLSKGDMRRALNILQACHAAYDRTTETEIYNCT 248
Query: 263 GNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRV 322
G+P P DI+ I ++ E F ++ IS +++ +GLAL D++ +V I++P RV
Sbjct: 249 GSPHPADIQAIVQSMMTEEFTTAYHNISRIRVERGLALQDLITGAYDYVESIELPPQARV 308
Query: 323 RLMNDLADIEYRLSFGCNDKLQLGSIISTF 352
L++ LAD E+RLS G ++KLQ +++ F
Sbjct: 309 YLLDHLADTEHRLSTGGSEKLQFTALLGAF 338
>gi|395326617|gb|EJF59024.1| P-loop containing nucleoside triphosphate hydrolase protein
[Dichomitus squalens LYAD-421 SS1]
Length = 354
Score = 355 bits (912), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 174/322 (54%), Positives = 228/322 (70%), Gaps = 5/322 (1%)
Query: 35 PPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAV 94
P D++ PWVEKYRP +L DV +H DI TI++ +NRLPHLL YGPPGTGKTSTILAV
Sbjct: 29 PYDLENLPWVEKYRPVTLDDVVSHHDITSTIEKFIEKNRLPHLLFYGPPGTGKTSTILAV 88
Query: 95 ARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQS-FSFGVKASVKLVLLDEADAM 153
AR++YG +Y ILELNASDDRGI+VVR+QI++FA T++ FS G K L++LDEAD M
Sbjct: 89 ARRIYGTEYRKQILELNASDDRGIEVVREQIKNFAETRTLFSKGYK----LIILDEADMM 144
Query: 154 TKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVI 213
T AQ ALRRVIE+YTKN RF +ICN VNKIIPA+QSRCTRFRF+PL V +R+ +VI
Sbjct: 145 TTAAQSALRRVIEQYTKNVRFCIICNYVNKIIPAIQSRCTRFRFSPLPIPEVEKRVNNVI 204
Query: 214 EAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQI 273
+AEG+ +T G AL++L GDMR+ALN+LQ+ H A + E +Y CTGNP P DIE I
Sbjct: 205 DAEGVKITAEGKQALLKLSKGDMRRALNVLQACHAAYELTGEAEIYNCTGNPQPADIETI 264
Query: 274 SYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEY 333
+L + F S+ IS +K+ +GLAL D++ ++ I R+ L++ LA E+
Sbjct: 265 VNSMLQDDFTTSYNLISALKIDRGLALPDLINGAYEYIETINFKPHARIYLLDFLATTEH 324
Query: 334 RLSFGCNDKLQLGSIISTFTQA 355
RLS G ++KLQ +++ F A
Sbjct: 325 RLSTGGSEKLQFTALLGAFKHA 346
>gi|170087828|ref|XP_001875137.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164650337|gb|EDR14578.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 334
Score = 353 bits (907), Expect = 6e-95, Method: Compositional matrix adjust.
Identities = 172/317 (54%), Positives = 230/317 (72%), Gaps = 5/317 (1%)
Query: 37 DIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVAR 96
+I+ S VEKYRP +L DV +H+DI +TI+R +NRLPHLL YGPPGTGKTSTILAVAR
Sbjct: 11 NIQRSFRVEKYRPVTLDDVVSHKDITNTIERFIEKNRLPHLLFYGPPGTGKTSTILAVAR 70
Query: 97 KLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQS-FSFGVKASVKLVLLDEADAMTK 155
++YGAQY ILELNASD+RGIDVVR+Q++ FA T++ F+ G K L++LDEAD MT+
Sbjct: 71 RIYGAQYRKQILELNASDERGIDVVREQVKQFAETRTLFAKGFK----LIILDEADMMTQ 126
Query: 156 DAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEA 215
AQ ALRRVIE+YTKN RF +ICN VNKI PA+QSRCTRFRF+PL + V +R+K V+EA
Sbjct: 127 QAQAALRRVIEQYTKNVRFCIICNYVNKITPAIQSRCTRFRFSPLPAIEVEKRVKTVVEA 186
Query: 216 EGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISY 275
E + +T+ G AL++L GDMR+ALN+LQ+ H A I E +Y CTGNP P DIE I
Sbjct: 187 EQVSLTDDGKKALLKLSRGDMRRALNVLQACHAAYDTIGETEIYNCTGNPHPSDIEAIVN 246
Query: 276 WLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRL 335
+L + F S++ S+MK +GLAL D++ ++ I + R+ L++ LA E+RL
Sbjct: 247 SMLADEFTASYQMTSKMKTERGLALQDLLTGAYEYLETIDIKPHARIYLLDHLATTEHRL 306
Query: 336 SFGCNDKLQLGSIISTF 352
S G ++K+QL +++ F
Sbjct: 307 STGGSEKMQLTALLGAF 323
>gi|224009073|ref|XP_002293495.1| replication factor C 36 kDa subunit [Thalassiosira pseudonana
CCMP1335]
gi|220970895|gb|EED89231.1| replication factor C 36 kDa subunit [Thalassiosira pseudonana
CCMP1335]
Length = 321
Score = 353 bits (906), Expect = 8e-95, Method: Compositional matrix adjust.
Identities = 169/320 (52%), Positives = 225/320 (70%), Gaps = 5/320 (1%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYG- 100
PWVEKYRP L D+ AH DIV + RL + LPHLLLYGPPGTGKTSTI+A A+++YG
Sbjct: 2 PWVEKYRPAKLEDLVAHEDIVAILTRLIDSDNLPHLLLYGPPGTGKTSTIVAAAKRMYGS 61
Query: 101 -AQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQF 159
A Y +M LELNASD RGIDVVR +I++FA T+ + +KL++LDEADAMT DAQF
Sbjct: 62 TAAYSSMALELNASDSRGIDVVRNEIKEFAGTRQL---FHSGIKLIILDEADAMTSDAQF 118
Query: 160 ALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLD 219
ALRRVIEK+TKN RF LICN V+KIIPALQSRCTRFRFAPL+ + RL V +AE +
Sbjct: 119 ALRRVIEKHTKNARFCLICNYVSKIIPALQSRCTRFRFAPLKQEQIRSRLVEVADAEKCN 178
Query: 220 VTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLN 279
TE G+ A++ L GDMR+ LN+LQST M S+ + E+ VY+ +G PLP+D+ WL+N
Sbjct: 179 YTEDGIQAILDLSGGDMRRVLNLLQSTAMGSEIVDEKNVYMTSGAPLPRDVHVAMEWLMN 238
Query: 280 ESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGC 339
F D +++++ M KG AL DI+ E+ V + P V L++ ++D+E+RL+FG
Sbjct: 239 LEFKDVYEKLTNMCSTKGYALTDILTELANKVTEANFPPGVLAVLLDGMSDVEHRLAFGT 298
Query: 340 NDKLQLGSIISTFTQARSAI 359
++KLQ S++ F + R +
Sbjct: 299 DEKLQAASLVGVFVKGRHVM 318
>gi|164656737|ref|XP_001729496.1| hypothetical protein MGL_3531 [Malassezia globosa CBS 7966]
gi|159103387|gb|EDP42282.1| hypothetical protein MGL_3531 [Malassezia globosa CBS 7966]
Length = 349
Score = 353 bits (905), Expect = 8e-95, Method: Compositional matrix adjust.
Identities = 164/314 (52%), Positives = 228/314 (72%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP SL + +H+ I T+++ + N+LPHLL YGPPGTGKTSTI+A+A +LYGA
Sbjct: 24 PWVEKYRPSSLDQIMSHQHITATLEKFITANQLPHLLFYGPPGTGKTSTIMALAARLYGA 83
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFAL 161
+ N +LELNASDDRGIDVVR QI+ FAST++ K + KLV+LDEADAMT+ AQ AL
Sbjct: 84 SFRNNVLELNASDDRGIDVVRGQIKAFASTRNVFSTQKDTFKLVILDEADAMTQAAQAAL 143
Query: 162 RRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVT 221
RRV+E+YT+N RF +ICN VNKIIPA+QSRCTRFRF+PL+ V V ++ VI AE +
Sbjct: 144 RRVMEQYTRNVRFCIICNYVNKIIPAIQSRCTRFRFSPLDRVQVERQIDSVIAAEHCQID 203
Query: 222 EGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNES 281
A+++LC GDMR+ALNILQ+ H A+ I E++VYLCTG+P P+DIE +L +
Sbjct: 204 AKAKHAILQLCQGDMRRALNILQACHAANDMIDEDSVYLCTGHPHPQDIETAFQAMLEQE 263
Query: 282 FADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCND 341
F +F+ I +++ KGLAL D++ + V +++P RV L++ +A IEYRLS ++
Sbjct: 264 FTTAFQTIQTLRVEKGLALTDLLTGMHALVLSLELPPHARVFLLDHMAQIEYRLSTNASE 323
Query: 342 KLQLGSIISTFTQA 355
++QL +++++ A
Sbjct: 324 RVQLSALLASVKAA 337
>gi|115496354|ref|NP_001068826.1| replication factor C subunit 5 [Bos taurus]
gi|79160183|gb|AAI08106.1| Replication factor C (activator 1) 5, 36.5kDa [Bos taurus]
gi|296478479|tpg|DAA20594.1| TPA: replication factor C 5 [Bos taurus]
Length = 316
Score = 353 bits (905), Expect = 9e-95, Method: Compositional matrix adjust.
Identities = 169/277 (61%), Positives = 216/277 (77%), Gaps = 4/277 (1%)
Query: 38 IKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARK 97
I+ PWVEKYRPQ+L D+ +H+DI+ TI + SE+RLPHLLLYGPPGTGKTSTILA A++
Sbjct: 16 IRNLPWVEKYRPQTLDDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQ 75
Query: 98 LY-GAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKD 156
LY ++ +M+LELNASDDRGID+VR I FAST++ K KLV+LDEADAMT+D
Sbjct: 76 LYKDKEFGSMVLELNASDDRGIDIVRGPILSFASTRTI---FKKGFKLVILDEADAMTQD 132
Query: 157 AQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAE 216
AQ ALRRVIEK+T+NTRF LICN ++KIIPALQSRCTRFRF PL P + RL+HV+E E
Sbjct: 133 AQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEE 192
Query: 217 GLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYW 276
+D++E G+ AL+ L +GDMR+ALNILQST+MA ++TEE VY CTG+PL DI I W
Sbjct: 193 KVDISEDGMKALITLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKSDIANILDW 252
Query: 277 LLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFK 313
+LN+ F +++ I E+K KGLAL DI+ E+ +FV +
Sbjct: 253 MLNQDFTTAYRNIMELKTLKGLALHDILTEIHLFVHR 289
>gi|426247314|ref|XP_004017431.1| PREDICTED: replication factor C subunit 5 isoform 2 [Ovis aries]
Length = 316
Score = 352 bits (904), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 169/277 (61%), Positives = 216/277 (77%), Gaps = 4/277 (1%)
Query: 38 IKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARK 97
I+ PWVEKYRPQ+L D+ +H+DI+ TI + SE+RLPHLLLYGPPGTGKTSTILA A++
Sbjct: 16 IRNLPWVEKYRPQTLDDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQ 75
Query: 98 LY-GAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKD 156
LY ++ +M+LELNASDDRGID+VR I FAST++ K KLV+LDEADAMT+D
Sbjct: 76 LYKDKEFGSMVLELNASDDRGIDIVRGPILSFASTRTI---FKKGFKLVILDEADAMTQD 132
Query: 157 AQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAE 216
AQ ALRRVIEK+T+NTRF LICN ++KIIPALQSRCTRFRF PL P + RL+HV+E E
Sbjct: 133 AQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEE 192
Query: 217 GLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYW 276
+D++E G+ AL+ L +GDMR+ALNILQST+MA ++TEE VY CTG+PL DI I W
Sbjct: 193 KVDISEDGMKALITLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKSDIANILDW 252
Query: 277 LLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFK 313
+LN+ F +++ I E+K KGLAL DI+ E+ +FV +
Sbjct: 253 MLNQDFTTAYRNIMELKTLKGLALHDILTEIHLFVHR 289
>gi|409041157|gb|EKM50643.1| hypothetical protein PHACADRAFT_152803 [Phanerochaete carnosa
HHB-10118-sp]
Length = 358
Score = 352 bits (904), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 172/315 (54%), Positives = 222/315 (70%), Gaps = 5/315 (1%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP +L DV +H+DI TI++ +NRLPHLL YGPPGTGKTSTILAVAR++YG
Sbjct: 41 PWVEKYRPVTLDDVVSHKDITSTIEKFIEKNRLPHLLFYGPPGTGKTSTILAVARRIYGK 100
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQS-FSFGVKASVKLVLLDEADAMTKDAQFA 160
Y ILELNASDDRGIDVVR+QI++FA T++ FS G K L++LDEAD MT AQ A
Sbjct: 101 DYRKQILELNASDDRGIDVVREQIKNFAETRTLFSKGYK----LIILDEADMMTTAAQAA 156
Query: 161 LRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDV 220
LRRVIE+YTKN RF +ICN VNKIIPA+QSRCTRFRF+PL V R+ VIE EG+ +
Sbjct: 157 LRRVIEQYTKNVRFCIICNYVNKIIPAVQSRCTRFRFSPLPVPEVERRINGVIETEGVKI 216
Query: 221 TEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNE 280
T G AL++L GDMR+ALN+LQ+ H A + E VY CTG P P DI I + ++
Sbjct: 217 TGDGRKALLKLSKGDMRRALNVLQACHAAYDETGEREVYHCTGTPDPADIANIVNSMFSD 276
Query: 281 SFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCN 340
F S+K IS +K +GLAL D++ +V ++++ R+ L++ A EYRLS G +
Sbjct: 277 EFTTSYKMISSLKTDRGLALQDLLNGAYEYVDELELKPHARIYLLDYFATAEYRLSAGAS 336
Query: 341 DKLQLGSIISTFTQA 355
+K+QL +++ F A
Sbjct: 337 EKIQLTALLGAFKNA 351
>gi|213405245|ref|XP_002173394.1| replication factor C subunit 3 [Schizosaccharomyces japonicus
yFS275]
gi|212001441|gb|EEB07101.1| replication factor C subunit 3 [Schizosaccharomyces japonicus
yFS275]
Length = 338
Score = 352 bits (904), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 168/331 (50%), Positives = 234/331 (70%), Gaps = 6/331 (1%)
Query: 24 DNGKNVIVSGTPPDIKAS-PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGP 82
D GK P+ + + PWVEKYRP++L DV AH+DI+ T+++ S NR+PH+L YGP
Sbjct: 2 DKGKGRATDFVKPETQDTLPWVEKYRPKNLDDVVAHKDIIATLEKFISTNRVPHMLFYGP 61
Query: 83 PGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFAST-QSFSFGVKAS 141
PGTGKTSTILA A ++YG + N ++ELNASDDRGIDVVR+QI+ FAST Q FS ++
Sbjct: 62 PGTGKTSTILACANRIYGPNFRNQVMELNASDDRGIDVVREQIKSFASTKQIFS----SA 117
Query: 142 VKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLE 201
KL++LDE DAMT AQ ALRRVIEKYT+N RF +ICN +NKI PA+QSRCTRFRF PL
Sbjct: 118 FKLIILDETDAMTLAAQNALRRVIEKYTRNVRFCIICNYINKIAPAIQSRCTRFRFQPLP 177
Query: 202 PVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLC 261
+ +++ V E E ++ G AL+RL GDMRKALNILQ+ H + E AVY C
Sbjct: 178 ITEIEKKVDEVAEKENCTISPEGKTALLRLSKGDMRKALNILQACHAVYDVVDEAAVYNC 237
Query: 262 TGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVR 321
G+P P DI+ ++NE + I+++K KGLAL DI+ ++ + ++++P++ R
Sbjct: 238 VGHPHPADIDYFLKSIMNEEVVTASNAITKLKQDKGLALQDIIACISEAIDELQIPANAR 297
Query: 322 VRLMNDLADIEYRLSFGCNDKLQLGSIISTF 352
+ ++++LA IEYR+SFGC++K+QL ++I+T
Sbjct: 298 IFILDNLAKIEYRMSFGCSEKIQLSALIATI 328
>gi|195118794|ref|XP_002003921.1| GI18168 [Drosophila mojavensis]
gi|193914496|gb|EDW13363.1| GI18168 [Drosophila mojavensis]
Length = 332
Score = 352 bits (903), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 172/331 (51%), Positives = 234/331 (70%), Gaps = 5/331 (1%)
Query: 31 VSGTPPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTST 90
+SG + PWVEKYRP L D+ +H +I+ TI+R ++ +LPHLL YGPPGTGKTST
Sbjct: 1 MSGNNGTVARMPWVEKYRPNCLDDLISHEEIISTINRFINQKQLPHLLFYGPPGTGKTST 60
Query: 91 ILAVARKLYG-AQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDE 149
ILA AR+LY A + +M+LELNASDDRGI +VR QI +FAST++ G + KL++LDE
Sbjct: 61 ILACARQLYSPAHFKSMVLELNASDDRGIGIVRGQILNFASTRTIFCG---TFKLIILDE 117
Query: 150 ADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERL 209
ADAMT DAQ ALRR+IEKYT+N RF +ICN ++KIIPALQSRCTRFRFAPL P + RL
Sbjct: 118 ADAMTNDAQNALRRIIEKYTENVRFCIICNYLSKIIPALQSRCTRFRFAPLSPEQMMPRL 177
Query: 210 KHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKD 269
V+E E +++T+ G AL+ L GDMRK LN+LQST MA + E+ VY+C G PL +
Sbjct: 178 NKVVEEENVNITDDGKKALLTLAKGDMRKVLNVLQSTSMAFDVVNEDNVYMCVGYPLRSE 237
Query: 270 IEQISYWLLN-ESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDL 328
IE + LL+ +F +F I E K ++GLAL DIV E+ +F+ ++++P V +L+ L
Sbjct: 238 IENVLQTLLSAATFDSAFDTIEEAKSKRGLALEDIVTELHLFIMRLELPMSVMNKLIIKL 297
Query: 329 ADIEYRLSFGCNDKLQLGSIISTFTQARSAI 359
A+IE RL+ GC++ Q +++S F +R +
Sbjct: 298 AEIEERLTKGCSETAQTAALVSAFFISRDMV 328
>gi|392574508|gb|EIW67644.1| hypothetical protein TREMEDRAFT_69661 [Tremella mesenterica DSM
1558]
Length = 350
Score = 352 bits (902), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 171/315 (54%), Positives = 226/315 (71%), Gaps = 5/315 (1%)
Query: 39 KASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKL 98
KA VEKYRP +L +V +H+DI +TI++ RLPHLLLYGPPGTGKTST+LA+AR+L
Sbjct: 28 KADNRVEKYRPNTLDEVVSHQDITNTIEKFIEAGRLPHLLLYGPPGTGKTSTVLALARRL 87
Query: 99 YGAQYHNMILELNASDDRGIDVVRQQIQDFASTQS-FSFGVKASVKLVLLDEADAMTKDA 157
YG Y ILELNASDDRGIDVVR QI+ FA T+ FS G K LV+LDEAD MT+ A
Sbjct: 88 YGPPYQKHILELNASDDRGIDVVRDQIKSFAMTKVLFSKGFK----LVILDEADMMTQAA 143
Query: 158 QFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEG 217
Q ALRRVIE +TKN RF ++CN VNKI PA+QSRCTRFRF+PL V ++ V+E EG
Sbjct: 144 QSALRRVIETHTKNVRFCILCNYVNKITPAIQSRCTRFRFSPLPEKEVQRKVDDVVEKEG 203
Query: 218 LDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWL 277
+++T+ G AAL++L GDMR+ALN+LQ+ H A +I E AVY CTGNP P+DIE++ +
Sbjct: 204 VNLTDDGRAALLKLSKGDMRRALNVLQACHAAYDKIDEMAVYTCTGNPHPRDIERVVQSM 263
Query: 278 LNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSF 337
+ + F S+ I+ +K+ KGLAL D++ F+ I+MP RV L++ L E+RLS
Sbjct: 264 MADEFGTSYSLITSLKLEKGLALQDLISGAYDFLQTIEMPPSARVYLLDHLGSCEHRLSL 323
Query: 338 GCNDKLQLGSIISTF 352
G ++K+QL +++ F
Sbjct: 324 GGSEKMQLTALLGAF 338
>gi|330801691|ref|XP_003288858.1| hypothetical protein DICPUDRAFT_153140 [Dictyostelium purpureum]
gi|325081104|gb|EGC34633.1| hypothetical protein DICPUDRAFT_153140 [Dictyostelium purpureum]
Length = 348
Score = 352 bits (902), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 173/313 (55%), Positives = 222/313 (70%), Gaps = 8/313 (2%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP+S+ D+ AH DI+ T N LPHLL YGPPGTGKTSTI A+ARKLYG
Sbjct: 28 PWVEKYRPKSINDLIAHDDII-----ATKSNTLPHLLFYGPPGTGKTSTIQAIARKLYGE 82
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFAL 161
Y M+LELNASDDRGIDVVR+QI+ FAS+ F F KL++LDEAD+MT AQ AL
Sbjct: 83 NYSRMVLELNASDDRGIDVVREQIKTFASSMFF-FNSTVPYKLIILDEADSMTNIAQTAL 141
Query: 162 RRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVT 221
RRVIEKYTK TRF ++CN V KIIPALQSRCTRFRF PL ERLK +++ E + +
Sbjct: 142 RRVIEKYTKTTRFCIVCNYVVKIIPALQSRCTRFRFKPLPDSATEERLKEILKIENVQID 201
Query: 222 EGGLAALVRLCNGDMRKALNILQSTHMASQQ-ITEEAVYLCTGNPLPKDIEQISYWLLNE 280
E G+ A++ L +GDMRK+LNILQS M++ I EE +Y CTGNP P D + WL NE
Sbjct: 202 EEGMKAVLFLGDGDMRKSLNILQSVSMSTNGLIGEEQIYKCTGNPSPTDFHMVLEWLFNE 261
Query: 281 SFADSFKRISEMKMRKGLALVDIVREVTMFVFKI-KMPSDVRVRLMNDLADIEYRLSFGC 339
F +F I+++K +KGL+L DI+ F+ ++ MPS + + ++ L+DIE+ LS G
Sbjct: 262 DFQTAFNNITDLKKKKGLSLTDIISYFPHFLMEMDDMPSILLCKALSHLSDIEFNLSNGA 321
Query: 340 NDKLQLGSIISTF 352
++KLQLGS++ +F
Sbjct: 322 SEKLQLGSLVGSF 334
>gi|321265444|ref|XP_003197438.1| DNA replication factor [Cryptococcus gattii WM276]
gi|317463918|gb|ADV25651.1| DNA replication factor, putative [Cryptococcus gattii WM276]
Length = 373
Score = 352 bits (902), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 172/338 (50%), Positives = 235/338 (69%), Gaps = 11/338 (3%)
Query: 25 NGKNVIVSGTPPDIKAS------PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLL 78
GK ++ T D KA PWVEKYRP SL DV +H+DI TI++ RLPHLL
Sbjct: 32 KGKGKEIAPTAADQKAVDDKEGLPWVEKYRPVSLDDVVSHKDITGTIEKFIEAGRLPHLL 91
Query: 79 LYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQS-FSFG 137
YGPPGTGKTST+LA+AR+LYG+ Y ILELNASDDRGIDVVR+QI++FA T+ FS G
Sbjct: 92 FYGPPGTGKTSTVLALARRLYGSAYKKHILELNASDDRGIDVVREQIKNFAMTKVLFSKG 151
Query: 138 VKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRF 197
K LV+LDEAD MT+ AQ ALRRVIE++TKN RF ++CN VNKI PA+QSRCTRFRF
Sbjct: 152 FK----LVILDEADMMTQAAQSALRRVIEQHTKNVRFCILCNYVNKITPAIQSRCTRFRF 207
Query: 198 APLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEA 257
+PL + ++ V++ EG+++TE G AL++L GDMR+ALN+LQ+ H A + E A
Sbjct: 208 SPLPEKEIQVKVDEVVQKEGVNLTEDGRDALLKLSRGDMRRALNVLQACHAAYDTVDETA 267
Query: 258 VYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMP 317
VY CTGNP P+DIE++ ++ + F ++ I+ +K+ KGLAL D++ F+ +++P
Sbjct: 268 VYNCTGNPHPRDIERVVQSMMADEFGTAYSLITSLKIEKGLALQDLIAGAYEFLDTVELP 327
Query: 318 SDVRVRLMNDLADIEYRLSFGCNDKLQLGSIISTFTQA 355
R+ L++ L E+RLS G ++K+QL +++ F A
Sbjct: 328 KQSRIYLLDHLGSTEHRLSLGGSEKMQLTALLGAFKVA 365
>gi|403160320|ref|XP_003320851.2| replication factor C subunit 3/5 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375169507|gb|EFP76432.2| replication factor C subunit 3/5 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 352
Score = 352 bits (902), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 174/344 (50%), Positives = 238/344 (69%), Gaps = 21/344 (6%)
Query: 23 KDNGKNVIVSGTPPDIKAS-----------PWVEKYRPQSLADVAAHRDIVDTIDRLTSE 71
K GK + G P+I A+ PWVEKYRP +L DV +H+DI+ TI + S
Sbjct: 3 KGKGKEI---GKQPEIAANGASKPASKEHLPWVEKYRPSTLDDVVSHQDIIQTIQKFISA 59
Query: 72 NRLPHLLLYGPPGTGKTSTILAVARKLYGA--QYHNMILELNASDDRGIDVVRQQIQDFA 129
N+LPHLL YGPPGTGKTSTILAVAR+L+ + N ILELNASDDRGIDVVR+QI++FA
Sbjct: 60 NQLPHLLFYGPPGTGKTSTILAVARQLFQTPMSFKNNILELNASDDRGIDVVREQIKNFA 119
Query: 130 STQS-FSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPAL 188
S + FS G K L++LDEAD MT+ AQ ALRRVIE+YTKN RF +ICN VN+I PA+
Sbjct: 120 SARMVFSSGFK----LIILDEADQMTQAAQSALRRVIEQYTKNVRFCIICNYVNRINPAI 175
Query: 189 QSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHM 248
QSRCTRFRF PL+ + R+ HV +AE + +++ G AL+ LC GDMR+ LN++Q+ H
Sbjct: 176 QSRCTRFRFGPLDHPEIERRIAHVADAESVKISDDGRKALLNLCKGDMRRVLNVMQACHS 235
Query: 249 ASQQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVT 308
++ E+AVY CTG+P PK IE+I ++N+ F SFKRI ++K+ GLAL DI+ +
Sbjct: 236 GYGKVDEDAVYECTGSPHPKQIEKIVESMMNDEFQTSFKRIQDIKINYGLALQDIISGIY 295
Query: 309 MFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDKLQLGSIISTF 352
++ I + ++ +++ L+ IE+RLS G +K+QL S++ +F
Sbjct: 296 DYLRTIVFEKNAQIYILDQLSQIEHRLSTGATEKIQLSSLLGSF 339
>gi|162312520|ref|XP_001713099.1| DNA replication factor C complex subunit Rfc3 [Schizosaccharomyces
pombe 972h-]
gi|13431787|sp|O14003.2|RFC3_SCHPO RecName: Full=Replication factor C subunit 3; Short=Replication
factor C3
gi|4468733|emb|CAB38106.1| replication factor C subunit [Schizosaccharomyces pombe]
gi|5688939|dbj|BAA82745.1| Rfc3 [Schizosaccharomyces pombe]
gi|5688941|dbj|BAA82746.1| Rfc3 [Schizosaccharomyces pombe]
gi|159884003|emb|CAB39134.2| DNA replication factor C complex subunit Rfc3 [Schizosaccharomyces
pombe]
Length = 342
Score = 350 bits (898), Expect = 7e-94, Method: Compositional matrix adjust.
Identities = 161/310 (51%), Positives = 226/310 (72%), Gaps = 3/310 (0%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP +L DV +H+DI+ T+++ S NR+PH+L YGPPGTGKTSTILA ARK+YG
Sbjct: 24 PWVEKYRPANLEDVVSHKDIISTLEKFISSNRVPHMLFYGPPGTGKTSTILACARKIYGP 83
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFAL 161
Y N ++ELNASDDRGID VR+QI++FAST+ ++ K+++LDEADAMT AQ AL
Sbjct: 84 NYRNQLMELNASDDRGIDAVREQIKNFASTRQI---FASTFKMIILDEADAMTLAAQNAL 140
Query: 162 RRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVT 221
RRVIEKYTKN RF +ICN +NKI PA+QSRCTRFRF PL P + + + HVI++E ++
Sbjct: 141 RRVIEKYTKNVRFCIICNYINKISPAIQSRCTRFRFQPLPPKEIEKTVDHVIQSEHCNID 200
Query: 222 EGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNES 281
A++RL GDMRKALNILQ+ H A I A+Y C G+P P DI+ ++N+
Sbjct: 201 PDAKMAVLRLSKGDMRKALNILQACHAAYDHIDVSAIYNCVGHPHPSDIDYFLKSIMNDE 260
Query: 282 FADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCND 341
F +F IS +K +KGLAL DI+ + + ++++ + ++ +++ LA IE+R+SFGC++
Sbjct: 261 FVIAFNTISSIKQQKGLALQDILTCIFEALDELEIKPNAKIFILDQLATIEHRMSFGCSE 320
Query: 342 KLQLGSIIST 351
K+QL ++I++
Sbjct: 321 KIQLSAMIAS 330
>gi|134118754|ref|XP_771880.1| hypothetical protein CNBN0610 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50254484|gb|EAL17233.1| hypothetical protein CNBN0610 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 373
Score = 350 bits (897), Expect = 7e-94, Method: Compositional matrix adjust.
Identities = 171/335 (51%), Positives = 234/335 (69%), Gaps = 11/335 (3%)
Query: 22 PKDNGKNVIVSGTPPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYG 81
P +GK V D + PWVEKYRP SL DV +H+DI TI++ RLPHLLLYG
Sbjct: 41 PAADGKAV------DDKEGLPWVEKYRPVSLDDVVSHKDITSTIEKFIEAGRLPHLLLYG 94
Query: 82 PPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQS-FSFGVKA 140
PPGTGKTST+LA+AR+LYG Y ILELNASDDRGIDVVR+QI++FA T+ FS G K
Sbjct: 95 PPGTGKTSTVLALARRLYGPAYRKHILELNASDDRGIDVVREQIKNFAMTKVLFSKGFK- 153
Query: 141 SVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPL 200
LV+LDEAD MT+ AQ ALRRVIE++TKN RF ++CN VNKI PA+QSRCTRFRF+PL
Sbjct: 154 ---LVILDEADMMTQAAQSALRRVIEQHTKNVRFCILCNYVNKITPAIQSRCTRFRFSPL 210
Query: 201 EPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYL 260
+ ++ V++ EG+++T+ G AL++L GDMR+ALN+LQ+ H A + E AVY
Sbjct: 211 PEKEIQVKVDEVVQKEGVNLTDDGRDALLKLSRGDMRRALNVLQACHAAYDIVDETAVYN 270
Query: 261 CTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDV 320
CTGNP P+DIE++ ++ + F ++ I+ +K+ KGLAL D++ F+ +++P
Sbjct: 271 CTGNPHPRDIERVVQSMMADEFGTAYSLITSLKIEKGLALQDLIAGAYEFLDTVELPKQS 330
Query: 321 RVRLMNDLADIEYRLSFGCNDKLQLGSIISTFTQA 355
R+ L++ L E+RLS G ++K+QL +++ F A
Sbjct: 331 RIYLLDHLGSTEHRLSLGGSEKMQLTALLGAFKVA 365
>gi|328859221|gb|EGG08331.1| hypothetical protein MELLADRAFT_47841 [Melampsora larici-populina
98AG31]
Length = 346
Score = 350 bits (897), Expect = 7e-94, Method: Compositional matrix adjust.
Identities = 169/314 (53%), Positives = 227/314 (72%), Gaps = 7/314 (2%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP +L +V +H+DI+ TI + + NRLPHLL YGPPGTGKTSTILA+AR+LY
Sbjct: 26 PWVEKYRPSTLEEVVSHKDIIYTIQKFITSNRLPHLLFYGPPGTGKTSTILAIARQLYQT 85
Query: 102 --QYHNMILELNASDDRGIDVVRQQIQDFASTQS-FSFGVKASVKLVLLDEADAMTKDAQ 158
+ N +LELNASDDRGI+VVR+QI++FAS + FS G K L++LDEAD MT AQ
Sbjct: 86 PMSFKNNVLELNASDDRGIEVVREQIKNFASARMVFSSGFK----LIILDEADQMTTTAQ 141
Query: 159 FALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGL 218
ALRRVIE+YTKN RF +ICN VN+I PA+QSRCT+FRF PL+ V R+ VI++E L
Sbjct: 142 SALRRVIEQYTKNVRFCIICNYVNRISPAIQSRCTKFRFGPLDLPEVDRRVGQVIDSENL 201
Query: 219 DVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLL 278
VTE G AL+ LC GDMR+ LN++Q+ H ++ E++VY CTG+P PK IE I ++
Sbjct: 202 VVTEDGRKALLNLCKGDMRRVLNVMQACHSGYGKVDEDSVYECTGSPHPKQIEDIVKSMM 261
Query: 279 NESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFG 338
NE F SFKRI ++K+ GLAL DI+ + F+ +++ + ++ L++ L+ IEYRLS G
Sbjct: 262 NEEFQTSFKRIQDIKVNFGLALQDIILGIYEFLKTVELGNLAQIYLLDQLSQIEYRLSTG 321
Query: 339 CNDKLQLGSIISTF 352
++KLQL ++ F
Sbjct: 322 GSEKLQLSGLLGCF 335
>gi|242019775|ref|XP_002430334.1| Replication factor C subunit, putative [Pediculus humanus corporis]
gi|212515458|gb|EEB17596.1| Replication factor C subunit, putative [Pediculus humanus corporis]
Length = 340
Score = 349 bits (896), Expect = 9e-94, Method: Compositional matrix adjust.
Identities = 174/324 (53%), Positives = 234/324 (72%), Gaps = 4/324 (1%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYG- 100
PWVEKYRPQ L D+ + IV+TI +L S +LPHLL YGPPGTGKT+TILA A+ LY
Sbjct: 14 PWVEKYRPQKLDDLISQDYIVNTIRKLISHKQLPHLLFYGPPGTGKTTTILACAKVLYTP 73
Query: 101 AQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFA 160
AQ+ +M+LELNASDDRGI VR I DFAST++ + VKL++LDEADAMT DAQ A
Sbjct: 74 AQFASMVLELNASDDRGIGTVRGAILDFASTKTM---FQGGVKLIILDEADAMTHDAQNA 130
Query: 161 LRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDV 220
LRR++EKYT N RF +ICN + KIIPA+QSRCT+FRFAPL+ + RL++VIE E + +
Sbjct: 131 LRRIMEKYTANVRFCIICNYLGKIIPAIQSRCTKFRFAPLDSKEILPRLEYVIEQEKIKI 190
Query: 221 TEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNE 280
++ G A++ L GDMRK LNILQST ++ ++ EE VY C G+PL DI ++ LLN+
Sbjct: 191 SDDGKQAVLTLGQGDMRKVLNILQSTFVSFSEVNEENVYTCVGHPLQCDIFEMLQSLLND 250
Query: 281 SFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCN 340
+ +DS+K+I +K KGLAL DIV E+ +V K+++PS V L+ L+DIEY L+ G +
Sbjct: 251 NLSDSYKKIQTIKTLKGLALSDIVTELHTWVHKLELPSKVVCLLLISLSDIEYNLNNGSS 310
Query: 341 DKLQLGSIISTFTQARSAIVAAAK 364
+ ++LG ++S F +AR+ V AK
Sbjct: 311 ENIELGKLLSAFYKARTLSVDIAK 334
>gi|58262374|ref|XP_568597.1| DNA replication factor [Cryptococcus neoformans var. neoformans
JEC21]
gi|57230771|gb|AAW47080.1| DNA replication factor, putative [Cryptococcus neoformans var.
neoformans JEC21]
Length = 373
Score = 349 bits (895), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 170/335 (50%), Positives = 234/335 (69%), Gaps = 11/335 (3%)
Query: 22 PKDNGKNVIVSGTPPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYG 81
P +GK V D + PWVEKYRP SL DV +H+DI TI++ RLPHLLLYG
Sbjct: 41 PAADGKAV------DDKEGLPWVEKYRPVSLDDVVSHKDITSTIEKFIEAGRLPHLLLYG 94
Query: 82 PPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQS-FSFGVKA 140
PPGTGKTST+LA+AR+LYG Y ILELNASDDRGIDVVR+QI++FA T+ FS G K
Sbjct: 95 PPGTGKTSTVLALARRLYGPAYRKHILELNASDDRGIDVVREQIKNFAMTKVLFSKGFK- 153
Query: 141 SVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPL 200
LV+LDEAD MT+ AQ ALRRVIE++TKN RF ++CN VNKI PA+QSRCTRFRF+PL
Sbjct: 154 ---LVILDEADMMTQAAQSALRRVIEQHTKNVRFCILCNYVNKITPAIQSRCTRFRFSPL 210
Query: 201 EPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYL 260
+ ++ V++ EG+++T+ G A+++L GDMR+ALN+LQ+ H A + E AVY
Sbjct: 211 PEKEIQVKVDEVVQKEGVNLTDDGRDAILKLSRGDMRRALNVLQACHAAYDIVDETAVYN 270
Query: 261 CTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDV 320
CTGNP P+DIE++ ++ + F ++ I+ +K+ KGLAL D++ F+ +++P
Sbjct: 271 CTGNPHPRDIERVVQSMMADEFGTAYSLITSLKIEKGLALQDLIAGAYEFLDTVELPKQS 330
Query: 321 RVRLMNDLADIEYRLSFGCNDKLQLGSIISTFTQA 355
R+ L++ L E+RLS G ++K+QL +++ F A
Sbjct: 331 RIYLLDHLGSTEHRLSLGGSEKMQLTALLGAFKVA 365
>gi|405123808|gb|AFR98571.1| DNA replication factor [Cryptococcus neoformans var. grubii H99]
Length = 373
Score = 349 bits (895), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 167/320 (52%), Positives = 229/320 (71%), Gaps = 5/320 (1%)
Query: 37 DIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVAR 96
D + PWVEKYRP SL DV +H+DI TI++ RLPHLLLYGPPGTGKTST+LA+AR
Sbjct: 50 DKEGLPWVEKYRPVSLDDVVSHKDITSTIEKFIEAGRLPHLLLYGPPGTGKTSTVLALAR 109
Query: 97 KLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQS-FSFGVKASVKLVLLDEADAMTK 155
+LYG Y ILELNASDDRGIDVVR+QI++FA T+ FS G K LV+LDEAD MT+
Sbjct: 110 RLYGPAYRKHILELNASDDRGIDVVREQIKNFAMTKVLFSKGFK----LVILDEADMMTQ 165
Query: 156 DAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEA 215
AQ ALRRVIE++TKN RF ++CN VNKI PA+QSRCTRFRF+PL + ++ V++
Sbjct: 166 AAQSALRRVIEQHTKNVRFCILCNYVNKITPAIQSRCTRFRFSPLPEKEIQVKVDEVVQK 225
Query: 216 EGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISY 275
EG+++T+ G AL++L GDMR+ALN+LQ+ H A + E AVY CTGNP P+DIE++
Sbjct: 226 EGVNLTDDGRDALLKLSRGDMRRALNVLQACHAAYDIVDETAVYNCTGNPHPRDIERVVQ 285
Query: 276 WLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRL 335
++ + F ++ I+ +K+ KGLAL D++ F+ +++P R+ L++ L E+RL
Sbjct: 286 SMMVDEFGTAYSLITTLKIEKGLALQDLIAGAYEFLDTVELPKQSRIYLLDHLGSTEHRL 345
Query: 336 SFGCNDKLQLGSIISTFTQA 355
S G ++K+QL +++ F A
Sbjct: 346 SLGGSEKMQLTALLGAFKVA 365
>gi|19921076|ref|NP_609399.1| replication factor C subunit 3 [Drosophila melanogaster]
gi|195339815|ref|XP_002036512.1| GM18361 [Drosophila sechellia]
gi|195578201|ref|XP_002078954.1| GD23698 [Drosophila simulans]
gi|7533196|gb|AAF63387.1|AF247499_1 replication factor C subunit 3 [Drosophila melanogaster]
gi|21430740|gb|AAM51048.1| SD11293p [Drosophila melanogaster]
gi|22946159|gb|AAF52944.2| replication factor C subunit 3 [Drosophila melanogaster]
gi|194130392|gb|EDW52435.1| GM18361 [Drosophila sechellia]
gi|194190963|gb|EDX04539.1| GD23698 [Drosophila simulans]
gi|220950744|gb|ACL87915.1| RfC3-PA [synthetic construct]
gi|220959368|gb|ACL92227.1| RfC3-PA [synthetic construct]
Length = 332
Score = 348 bits (892), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 174/320 (54%), Positives = 224/320 (70%), Gaps = 5/320 (1%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP L D+ +H +I+ TI R S +LPHLL YGPPGTGKTSTILA AR+LY
Sbjct: 12 PWVEKYRPSGLDDLISHEEIISTITRFISRKQLPHLLFYGPPGTGKTSTILACARQLYSP 71
Query: 102 Q-YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFA 160
Q + +M+LELNASDDRGI +VR QI +FAST++ + KL++LDEADAMT DAQ A
Sbjct: 72 QQFKSMVLELNASDDRGIGIVRGQILNFASTRTIFCD---TFKLIILDEADAMTNDAQNA 128
Query: 161 LRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDV 220
LRR+IEKYT N RF +ICN ++KIIPALQSRCTRFRFAPL + RL+ +IEAE + +
Sbjct: 129 LRRIIEKYTDNVRFCVICNYLSKIIPALQSRCTRFRFAPLSQDQMMPRLEKIIEAEAVQI 188
Query: 221 TEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLN- 279
TE G AL+ L GDMRK LN+LQST MA + E+ VY+C G PL +DIEQI LL+
Sbjct: 189 TEDGKRALLTLAKGDMRKVLNVLQSTVMAFDTVNEDNVYMCVGYPLRQDIEQILKALLSG 248
Query: 280 ESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGC 339
S DSFK + K +GLAL DI+ E+ +FV ++++P V +L+ LA IE RL+ GC
Sbjct: 249 SSLEDSFKTVESAKYARGLALEDIITELHLFVMRLELPMSVMNKLIVKLAQIEERLAKGC 308
Query: 340 NDKLQLGSIISTFTQARSAI 359
+ Q ++++ F R +
Sbjct: 309 TEVAQTAALVAAFFICRDMV 328
>gi|194761822|ref|XP_001963122.1| GF15785 [Drosophila ananassae]
gi|190616819|gb|EDV32343.1| GF15785 [Drosophila ananassae]
Length = 332
Score = 347 bits (891), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 174/320 (54%), Positives = 225/320 (70%), Gaps = 5/320 (1%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP L D+ +H +I+ TI R S +LPHLL YGPPGTGKTSTILA AR+LY
Sbjct: 12 PWVEKYRPSGLDDLISHEEIISTISRFISRKQLPHLLFYGPPGTGKTSTILACARQLYSP 71
Query: 102 Q-YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFA 160
Q + +M+LELNASDDRGI +VR QI +FAST++ + KL++LDEADAMT DAQ A
Sbjct: 72 QQFKSMVLELNASDDRGIGIVRGQILNFASTRTIFCD---TFKLIILDEADAMTNDAQNA 128
Query: 161 LRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDV 220
LRR+IEKYT N RF +ICN ++KIIPALQSRCTRFRFAPL P + RL+ +I+AE + +
Sbjct: 129 LRRIIEKYTDNVRFCVICNYLSKIIPALQSRCTRFRFAPLSPDQMMPRLEKIIDAEAVQI 188
Query: 221 TEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLN- 279
TE G AL+ L GDMRK LN+LQST MA ++ E+ VY C G PL +DIEQI LL+
Sbjct: 189 TEDGKRALLTLAKGDMRKVLNVLQSTVMAFDKVNEDNVYTCVGYPLRQDIEQILKALLSG 248
Query: 280 ESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGC 339
S DSFK + K +GLAL DI+ E+ +FV ++++P V +L+ LA IE RL+ GC
Sbjct: 249 NSVEDSFKTVENAKYARGLALEDILTELHLFVMRLELPMSVMNKLIVKLAQIEERLAKGC 308
Query: 340 NDKLQLGSIISTFTQARSAI 359
+ Q ++++ F R +
Sbjct: 309 TEPAQTAALVAAFFICRDMV 328
>gi|219117762|ref|XP_002179670.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217408723|gb|EEC48656.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 338
Score = 347 bits (891), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 170/322 (52%), Positives = 232/322 (72%), Gaps = 8/322 (2%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRPQ L D+ + DIV +I L LPHLLLYGPPGTGKTSTI+A A+++YG+
Sbjct: 18 PWVEKYRPQRLEDLVSQDDIVSSITNLIDSENLPHLLLYGPPGTGKTSTIVAAAKRMYGS 77
Query: 102 Q--YHNMILELNASDDRGIDVVRQQIQDFAST-QSFSFGVKASVKLVLLDEADAMTKDAQ 158
Y +M LELNASD RGIDVVR +I++FA T Q F+ G+K L++LDEADAMT DAQ
Sbjct: 78 SSAYSSMTLELNASDARGIDVVRNEIKEFAGTKQLFNKGIK----LIILDEADAMTSDAQ 133
Query: 159 FALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGL 218
FALRR+IEKYTKN RF L+CN V+KIIPALQSRCTRFRFAPL + RL V EAE
Sbjct: 134 FALRRIIEKYTKNARFCLVCNYVSKIIPALQSRCTRFRFAPLSRDQIEGRLTEVAEAEKC 193
Query: 219 DVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLL 278
T+ G+ A++RL GDMR+ LN+LQST M+++ + E +VYL +G PLP D++QI WL+
Sbjct: 194 KTTQDGIDAILRLSGGDMRRVLNLLQSTAMSAEVVDETSVYLTSGAPLPADMDQILDWLM 253
Query: 279 NESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRV-RLMNDLADIEYRLSF 337
N +F + ++I+ M KG AL D++ E+T + ++ V + L++ ++++E+RL+F
Sbjct: 254 NHNFQTACEQITAMCTMKGYALADVLAELTSKIMCLENLDSVPLGMLLDGMSNVEHRLAF 313
Query: 338 GCNDKLQLGSIISTFTQARSAI 359
G ++K+Q+ S++ F + R AI
Sbjct: 314 GPDEKIQIASLVGVFVRTREAI 335
>gi|195384914|ref|XP_002051157.1| GJ14606 [Drosophila virilis]
gi|194147614|gb|EDW63312.1| GJ14606 [Drosophila virilis]
Length = 332
Score = 346 bits (888), Expect = 8e-93, Method: Compositional matrix adjust.
Identities = 169/320 (52%), Positives = 228/320 (71%), Gaps = 5/320 (1%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYG- 100
PWVEKYRP L D+ +H +I+ TI+R ++ +LPHLL YGPPGTGKTSTILA AR+LY
Sbjct: 12 PWVEKYRPNCLDDLISHEEIISTINRFINQKQLPHLLFYGPPGTGKTSTILACARQLYSP 71
Query: 101 AQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFA 160
A + +M+LELNASDDRGI +VR QI +FAST++ G + KL++LDEADAMT DAQ A
Sbjct: 72 AHFKSMVLELNASDDRGIGIVRGQILNFASTRTIFCG---TFKLIILDEADAMTNDAQNA 128
Query: 161 LRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDV 220
LRR+IEKYT+N RF +ICN ++KIIPALQSRCTRFRFAPL P + RL VI+ E ++V
Sbjct: 129 LRRIIEKYTENVRFCVICNYLSKIIPALQSRCTRFRFAPLSPEQMLPRLNKVIQEENVNV 188
Query: 221 TEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLN- 279
T+ G AL+ L GDMRK LN+LQST MA + E+ VY+C G PL +IE + LL+
Sbjct: 189 TDDGKNALLTLAKGDMRKVLNVLQSTSMAFDIVNEDNVYMCVGYPLRSEIEHMLQTLLSA 248
Query: 280 ESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGC 339
+F +F I E K ++GLAL DIV E+ +F+ ++++P V +L+ +A +E RL+ GC
Sbjct: 249 ATFDSAFDTIEEAKSKRGLALEDIVTELHLFIMRLELPMSVMNKLIVKMAQVEERLTKGC 308
Query: 340 NDKLQLGSIISTFTQARSAI 359
+ Q +++S F +R +
Sbjct: 309 TETAQTAALVSAFFISRDMV 328
>gi|195473665|ref|XP_002089113.1| GE18941 [Drosophila yakuba]
gi|194175214|gb|EDW88825.1| GE18941 [Drosophila yakuba]
Length = 332
Score = 345 bits (886), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 173/320 (54%), Positives = 224/320 (70%), Gaps = 5/320 (1%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP L D+ +H +I+ TI R S +LPHLL YGPPGTGKTSTILA AR+LY
Sbjct: 12 PWVEKYRPSGLDDLISHEEIISTITRFISRKQLPHLLFYGPPGTGKTSTILACARQLYSP 71
Query: 102 Q-YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFA 160
Q + +M+LELNASDDRGI +VR QI +FAST++ + KL++LDEADAMT DAQ A
Sbjct: 72 QQFKSMVLELNASDDRGIGIVRGQILNFASTRTIFCD---TFKLIILDEADAMTNDAQNA 128
Query: 161 LRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDV 220
LRR+IEKYT N RF +ICN ++KIIPALQSRCTRFRFAPL + RL+ +IEAE + +
Sbjct: 129 LRRIIEKYTDNVRFCVICNYLSKIIPALQSRCTRFRFAPLSQNQMMPRLEKIIEAEAVQI 188
Query: 221 TEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLN- 279
T+ G AL+ L GDMRK LN+LQST MA + E+ VY+C G PL +DIEQI LL+
Sbjct: 189 TDDGKRALLTLAKGDMRKVLNVLQSTVMAFDTVNEDNVYMCVGYPLRQDIEQILKALLSG 248
Query: 280 ESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGC 339
S DSFK + K +GLAL DI+ E+ +FV ++++P V +L+ LA IE RL+ GC
Sbjct: 249 NSLEDSFKTVESAKYARGLALEDIITELHLFVMRLELPMSVMNKLIVKLAQIEERLAKGC 308
Query: 340 NDKLQLGSIISTFTQARSAI 359
+ Q ++++ F R +
Sbjct: 309 TEVAQTAALVAAFFICRDMV 328
>gi|194859928|ref|XP_001969482.1| GG10129 [Drosophila erecta]
gi|190661349|gb|EDV58541.1| GG10129 [Drosophila erecta]
Length = 332
Score = 345 bits (886), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 173/320 (54%), Positives = 224/320 (70%), Gaps = 5/320 (1%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP L D+ +H +I+ TI R S +LPHLL YGPPGTGKTSTILA AR+LY
Sbjct: 12 PWVEKYRPSGLDDLISHEEIISTITRFISRKQLPHLLFYGPPGTGKTSTILACARQLYSP 71
Query: 102 Q-YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFA 160
Q + +M+LELNASDDRGI +VR QI +FAST++ + KL++LDEADAMT DAQ A
Sbjct: 72 QQFKSMVLELNASDDRGIGIVRGQILNFASTRTIFCD---TFKLIILDEADAMTNDAQNA 128
Query: 161 LRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDV 220
LRR+IEKYT N RF +ICN ++KIIPALQSRCTRFRFAPL + RL+ +IEAE + +
Sbjct: 129 LRRIIEKYTDNVRFCVICNYLSKIIPALQSRCTRFRFAPLSQDQMMPRLEKIIEAEAVQI 188
Query: 221 TEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLN- 279
T+ G AL+ L GDMRK LN+LQST MA + E+ VY+C G PL +DIEQI LL+
Sbjct: 189 TDDGKRALLTLAKGDMRKVLNVLQSTVMAFDTVNEDNVYMCVGYPLRQDIEQILKALLSG 248
Query: 280 ESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGC 339
S DSFK + K +GLAL DI+ E+ +FV ++++P V +L+ LA IE RL+ GC
Sbjct: 249 NSLEDSFKTVESAKYARGLALEDIITELHLFVMRLELPMSVMNKLIVKLAQIEERLAKGC 308
Query: 340 NDKLQLGSIISTFTQARSAI 359
+ Q ++++ F R +
Sbjct: 309 TEVAQTAALVAAFFICRDMV 328
>gi|195051153|ref|XP_001993043.1| GH13305 [Drosophila grimshawi]
gi|193900102|gb|EDV98968.1| GH13305 [Drosophila grimshawi]
Length = 332
Score = 345 bits (884), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 168/320 (52%), Positives = 227/320 (70%), Gaps = 5/320 (1%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYG- 100
PWVEKYRP L D+ +H +I+ TI R ++ +LPHLL YGPPGTGKTSTILA AR+LY
Sbjct: 12 PWVEKYRPNCLDDLISHEEIISTITRFINQKQLPHLLFYGPPGTGKTSTILACARQLYSS 71
Query: 101 AQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFA 160
A + +M+LELNASDDRGI +VR QI +FAST++ G + KL++LDEADAMT DAQ A
Sbjct: 72 AHFKSMVLELNASDDRGIGIVRGQILNFASTRTIFCG---TFKLIILDEADAMTNDAQNA 128
Query: 161 LRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDV 220
LRR+IEKYT+N RF +ICN ++KIIPALQSRCTRFRFAPL + RL +++ E ++V
Sbjct: 129 LRRIIEKYTENVRFCIICNYLSKIIPALQSRCTRFRFAPLSAEQMLPRLNQIVQEEHVNV 188
Query: 221 TEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLN- 279
T+ G AL+ L GDMRK LN+LQST MA + E+ VY+C G PL +IE + LL+
Sbjct: 189 TDDGKNALLTLSKGDMRKVLNVLQSTSMAFDIVNEDNVYMCVGYPLRSEIEHMLQTLLSA 248
Query: 280 ESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGC 339
+F ++ I E K ++GLAL DIV E+ +F+ ++++P V +L+ LA +E RLS GC
Sbjct: 249 ATFESAYDTIEEAKTKRGLALEDIVTELHLFIMRLELPMSVMNKLIVKLAQVEERLSKGC 308
Query: 340 NDKLQLGSIISTFTQARSAI 359
+K Q +++S F +R +
Sbjct: 309 TEKAQTAALVSAFFISRDLV 328
>gi|390600120|gb|EIN09515.1| P-loop containing nucleoside triphosphate hydrolase protein
[Punctularia strigosozonata HHB-11173 SS5]
Length = 354
Score = 344 bits (883), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 170/315 (53%), Positives = 224/315 (71%), Gaps = 6/315 (1%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP +L DV +H+DI TI+ +NRLPHLL YGPPGTGKTSTILAVAR++YG
Sbjct: 37 PWVEKYRPVTLDDVVSHKDITCTIENFIQKNRLPHLLFYGPPGTGKTSTILAVARRIYGD 96
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQS-FSFGVKASVKLVLLDEADAMTKDAQFA 160
+ ILELNASDDRGIDVVR+QI+ FA T++ FS G K L++LDEAD MT+ AQ A
Sbjct: 97 DFRKQILELNASDDRGIDVVREQIKQFAETRTLFSKGYK----LIILDEADMMTQAAQAA 152
Query: 161 LRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDV 220
LRRVIE+YTKN RF +ICN VNKI PA+QSRCTRFRF+PL V R++ V++AEG+ +
Sbjct: 153 LRRVIEQYTKNVRFCIICNYVNKITPAIQSRCTRFRFSPLPIPEVERRVQTVVDAEGVQL 212
Query: 221 TEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNE 280
E G AL++L GDMR+ALN+LQ+ H A +I E +Y CTGNP P DIE I +L +
Sbjct: 213 REDGKKALLKLSKGDMRRALNVLQACHAAYDEIGETEIYNCTGNPHPSDIETIVNSMLAD 272
Query: 281 SFADSFKR-ISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGC 339
F S++ I+ +K +GLAL D++ ++ I++ R L++ LA EYRLS G
Sbjct: 273 EFTTSYQSVINALKTERGLALQDLLAGAFDYIETIELKPHARAYLLDHLATTEYRLSTGG 332
Query: 340 NDKLQLGSIISTFTQ 354
++K+QL +++ F +
Sbjct: 333 SEKIQLTALLGAFKE 347
>gi|225718872|gb|ACO15282.1| Replication factor C subunit 5 [Caligus clemensi]
Length = 345
Score = 342 bits (876), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 165/320 (51%), Positives = 228/320 (71%), Gaps = 2/320 (0%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP+ L+D+ +H DIV TI R E+R+PH+L YGPPGTGKTS ILA +R+++G
Sbjct: 16 PWVEKYRPKDLSDLVSHEDIVGTIRRFVKESRMPHMLFYGPPGTGKTSAILAASREVFGE 75
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGV-KASVKLVLLDEADAMTKDAQFA 160
++ +LELNASDDRGIDV R +I +FAST+ + AS KL++LDEADAMT DAQ A
Sbjct: 76 TSNSSVLELNASDDRGIDVARGRILNFASTKRIAIQAGTASFKLIILDEADAMTNDAQNA 135
Query: 161 LRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDV 220
LRR+IEK+T N RF LICN ++KIIPALQSRCTRFRFAPL + RL+ V++ E L++
Sbjct: 136 LRRIIEKFTDNVRFCLICNYLSKIIPALQSRCTRFRFAPLASEQILPRLQAVVKEESLEM 195
Query: 221 TEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNE 280
+ G AL+ L GDMR+ LNILQS MA I E +Y CTG+P P DI LLN+
Sbjct: 196 SPDGAKALLTLAKGDMRRILNILQSCSMAFPVINESNIYACTGHPPPSDISLALESLLND 255
Query: 281 SFADSFKRIS-EMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGC 339
+++ I +++ KGL+L+DI+ E+ + V ++++ + V+V+L+ LAD E+RL G
Sbjct: 256 DLQKAYQTIHVQLQTTKGLSLIDILTELHLLVHRLEISNRVKVKLLIKLADAEHRLLSGT 315
Query: 340 NDKLQLGSIISTFTQARSAI 359
++K+QLG++++ F AR I
Sbjct: 316 SEKIQLGAVVAAFRTAREMI 335
>gi|134118756|ref|XP_771881.1| hypothetical protein CNBN0610 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50254485|gb|EAL17234.1| hypothetical protein CNBN0610 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 327
Score = 340 bits (871), Expect = 8e-91, Method: Compositional matrix adjust.
Identities = 164/313 (52%), Positives = 225/313 (71%), Gaps = 5/313 (1%)
Query: 44 VEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQY 103
VEKYRP SL DV +H+DI TI++ RLPHLLLYGPPGTGKTST+LA+AR+LYG Y
Sbjct: 11 VEKYRPVSLDDVVSHKDITSTIEKFIEAGRLPHLLLYGPPGTGKTSTVLALARRLYGPAY 70
Query: 104 HNMILELNASDDRGIDVVRQQIQDFASTQS-FSFGVKASVKLVLLDEADAMTKDAQFALR 162
ILELNASDDRGIDVVR+QI++FA T+ FS G K LV+LDEAD MT+ AQ ALR
Sbjct: 71 RKHILELNASDDRGIDVVREQIKNFAMTKVLFSKGFK----LVILDEADMMTQAAQSALR 126
Query: 163 RVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTE 222
RVIE++TKN RF ++CN VNKI PA+QSRCTRFRF+PL + ++ V++ EG+++T+
Sbjct: 127 RVIEQHTKNVRFCILCNYVNKITPAIQSRCTRFRFSPLPEKEIQVKVDEVVQKEGVNLTD 186
Query: 223 GGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESF 282
G AL++L GDMR+ALN+LQ+ H A + E AVY CTGNP P+DIE++ ++ + F
Sbjct: 187 DGRDALLKLSRGDMRRALNVLQACHAAYDIVDETAVYNCTGNPHPRDIERVVQSMMADEF 246
Query: 283 ADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDK 342
++ I+ +K+ KGLAL D++ F+ +++P R+ L++ L E+RLS G ++K
Sbjct: 247 GTAYSLITSLKIEKGLALQDLIAGAYEFLDTVELPKQSRIYLLDHLGSTEHRLSLGGSEK 306
Query: 343 LQLGSIISTFTQA 355
+QL +++ F A
Sbjct: 307 MQLTALLGAFKVA 319
>gi|323454913|gb|EGB10782.1| hypothetical protein AURANDRAFT_71065 [Aureococcus anophagefferens]
Length = 747
Score = 339 bits (869), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 177/366 (48%), Positives = 237/366 (64%), Gaps = 18/366 (4%)
Query: 6 TVSLMDFDEDENQNLKPKDNGKNVIVSGTPPDIK------ASPWVEKYRPQSLADVAAHR 59
T+S M+ DE +P+D V + + K A PWVEKYRP SL ++ AH+
Sbjct: 390 TMSAMELDE------QPEDATMAVAGAASSKKAKLEAKALARPWVEKYRPSSLDELVAHK 443
Query: 60 DIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGID 119
DI+ + RL ++LPH LLYGPPGTGKTSTILA A+ +YGA Y +M LELNASDDRGID
Sbjct: 444 DIISVLRRLIEADKLPHTLLYGPPGTGKTSTILAAAKDMYGAGYKSMTLELNASDDRGID 503
Query: 120 VVRQQIQDFASTQS-FSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALIC 178
VVR QI++FA T+ FS G +KL++LDEAD MTKDAQFALRRVIEKYT N RF LIC
Sbjct: 504 VVRDQIKEFAGTRRLFSKG----IKLIILDEADMMTKDAQFALRRVIEKYTANARFCLIC 559
Query: 179 NQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRK 238
N NKIIPALQSRCT+FRFAPL P + R+ ++ E + + AL+ L GDMR+
Sbjct: 560 NYANKIIPALQSRCTKFRFAPLAPDQIAGRVADIVRRENVAIGTKATDALLELGKGDMRR 619
Query: 239 ALNILQSTHMA-SQQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKG 297
LN+LQ+ +A ++T E+++L TGNPLP ++ I LLN++F + + ++ +G
Sbjct: 620 VLNVLQAAAVAYPGEVTYESLFLVTGNPLPDHVDAIFASLLNDTFDAARTLLGDLCKTQG 679
Query: 298 LALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDKLQLGSIISTFTQARS 357
AL D++ + V K+P+ + ++ LADIEYR +F +LQL S++S F AR
Sbjct: 680 YALPDLLTRINAKVVAAKLPNAAKAHVLTKLADIEYRCAFATTTELQLSSLVSAFVVARG 739
Query: 358 AIVAAA 363
A A
Sbjct: 740 LAPAPA 745
>gi|58262376|ref|XP_568598.1| DNA replication factor [Cryptococcus neoformans var. neoformans
JEC21]
gi|57230772|gb|AAW47081.1| DNA replication factor, putative [Cryptococcus neoformans var.
neoformans JEC21]
Length = 327
Score = 339 bits (869), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 163/313 (52%), Positives = 225/313 (71%), Gaps = 5/313 (1%)
Query: 44 VEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQY 103
VEKYRP SL DV +H+DI TI++ RLPHLLLYGPPGTGKTST+LA+AR+LYG Y
Sbjct: 11 VEKYRPVSLDDVVSHKDITSTIEKFIEAGRLPHLLLYGPPGTGKTSTVLALARRLYGPAY 70
Query: 104 HNMILELNASDDRGIDVVRQQIQDFASTQS-FSFGVKASVKLVLLDEADAMTKDAQFALR 162
ILELNASDDRGIDVVR+QI++FA T+ FS G K LV+LDEAD MT+ AQ ALR
Sbjct: 71 RKHILELNASDDRGIDVVREQIKNFAMTKVLFSKGFK----LVILDEADMMTQAAQSALR 126
Query: 163 RVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTE 222
RVIE++TKN RF ++CN VNKI PA+QSRCTRFRF+PL + ++ V++ EG+++T+
Sbjct: 127 RVIEQHTKNVRFCILCNYVNKITPAIQSRCTRFRFSPLPEKEIQVKVDEVVQKEGVNLTD 186
Query: 223 GGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESF 282
G A+++L GDMR+ALN+LQ+ H A + E AVY CTGNP P+DIE++ ++ + F
Sbjct: 187 DGRDAILKLSRGDMRRALNVLQACHAAYDIVDETAVYNCTGNPHPRDIERVVQSMMADEF 246
Query: 283 ADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDK 342
++ I+ +K+ KGLAL D++ F+ +++P R+ L++ L E+RLS G ++K
Sbjct: 247 GTAYSLITSLKIEKGLALQDLIAGAYEFLDTVELPKQSRIYLLDHLGSTEHRLSLGGSEK 306
Query: 343 LQLGSIISTFTQA 355
+QL +++ F A
Sbjct: 307 MQLTALLGAFKVA 319
>gi|340056431|emb|CCC50763.1| putative replication factor C, subunit 3 [Trypanosoma vivax Y486]
Length = 374
Score = 338 bits (868), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 162/323 (50%), Positives = 223/323 (69%), Gaps = 5/323 (1%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP +L +V AH +I+ T RL +PH L YGPPGTGKT+T+ A A L+G
Sbjct: 39 PWVEKYRPSTLDEVVAHEEILSTTRRLIDSGSMPHFLFYGPPGTGKTTTVKACAHYLFGK 98
Query: 102 Q-YHNMILELNASDDRGIDVVRQQIQDFASTQSF----SFGVKASVKLVLLDEADAMTKD 156
+ +LE+NASDDRGIDVVRQQ+++FAST S S +S KLV+LDEAD M+ D
Sbjct: 99 ERVRANVLEMNASDDRGIDVVRQQVREFASTSSIFCTNSSNPVSSFKLVILDEADQMSGD 158
Query: 157 AQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAE 216
AQ ALRR+IEKYTKN RF +ICN++NKIIPALQSRCTRFRFAP++ + RLK V++ E
Sbjct: 159 AQAALRRIIEKYTKNVRFCIICNRINKIIPALQSRCTRFRFAPVKKGAMLPRLKFVVQEE 218
Query: 217 GLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYW 276
G+ TE GLAA RLCNGDMR+ LNI+QS+ M++ ++TEE+VY TGNP P ++ I
Sbjct: 219 GVRFTEEGLAAAFRLCNGDMRRCLNIMQSSAMSAGEVTEESVYRTTGNPTPAEVRGIVED 278
Query: 277 LLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLS 336
+L +A S++++ + + KG++ D+VREV V + +P D + L+ LAD+EY +
Sbjct: 279 MLAHDYALSWEKMQQAVIEKGVSATDLVREVHHIVMAMDLPVDCKCFLLTKLADVEYYAA 338
Query: 337 FGCNDKLQLGSIISTFTQARSAI 359
G + + +G ++ F + A+
Sbjct: 339 SGTRESINIGGVLGAFQLVKEAL 361
>gi|300122519|emb|CBK23089.2| unnamed protein product [Blastocystis hominis]
Length = 341
Score = 338 bits (867), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 163/318 (51%), Positives = 224/318 (70%), Gaps = 3/318 (0%)
Query: 40 ASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLY 99
A PWVEKYRP SL ++ + DIV TI R NRLPHLL YGPPGTGKT+TI+AVA+ LY
Sbjct: 20 ALPWVEKYRPTSLDNIVSQDDIVATIKRFIEGNRLPHLLFYGPPGTGKTTTIMAVAKMLY 79
Query: 100 GAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQF 159
G+ + +M+LELNASDDRGI+VVR+QI+ FA T+ VKLV+LDEAD MT AQF
Sbjct: 80 GSSHSSMVLELNASDDRGINVVREQIKVFAGTKKL---FHTGVKLVILDEADNMTNAAQF 136
Query: 160 ALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLD 219
ALRR+IEKY++NTRF LICN V++IIPA+QSRCTRFRF PL P + RL +++ E ++
Sbjct: 137 ALRRIIEKYSQNTRFCLICNYVSEIIPAVQSRCTRFRFQPLNPQLIRSRLLYILRQENVE 196
Query: 220 VTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLN 279
+ G+AAL+ L GDMR+ +N+LQ+T MA ++T E VY C G P P D+E + L+
Sbjct: 197 FDDDGVAALLALSRGDMRRVINVLQATAMAFGKVTAEHVYRCAGMPSPADMELVLSSLMA 256
Query: 280 ESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGC 339
+S+ D+ K + E++ +K A+ DI+ E+ + ++ P V L +LAD+E RL+ G
Sbjct: 257 KSYGDALKTLEELQRKKMFAMSDILTELVGKLQEVSFPPAVDAFLYRELADLEVRLNAGT 316
Query: 340 NDKLQLGSIISTFTQARS 357
+++QL S++ FT+ RS
Sbjct: 317 QEEIQLRSLVGIFTKVRS 334
>gi|145343698|ref|XP_001416450.1| replication factor C subunit 5 (36kDa), probable [Ostreococcus
lucimarinus CCE9901]
gi|144576675|gb|ABO94743.1| replication factor C subunit 5 (36kDa), probable [Ostreococcus
lucimarinus CCE9901]
Length = 332
Score = 337 bits (865), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 159/323 (49%), Positives = 230/323 (71%), Gaps = 5/323 (1%)
Query: 35 PPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAV 94
P +A PW EKYRP L++V AH+ IVD I++ +LPHLL +GPPGTGKTSTILA+
Sbjct: 7 PSVNRALPWTEKYRPVGLSEVVAHKAIVDVINKFADGGQLPHLLFHGPPGTGKTSTILAL 66
Query: 95 ARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFAST-QSFSFGVKASVKLVLLDEADAM 153
A++LYG + NM+LELNASD RGI+VVR +IQ FAST + FS + KLV++DE D+M
Sbjct: 67 AKELYGLNFSNMVLELNASDARGINVVRDEIQSFASTMRPFS----TTFKLVIMDECDSM 122
Query: 154 TKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVI 213
TKDAQFALRR++EKYT++TRF LICN +K+IPALQSRCT+FRF+P+ + +RL+H++
Sbjct: 123 TKDAQFALRRIMEKYTQHTRFCLICNYASKVIPALQSRCTKFRFSPIASGDMLQRLRHIV 182
Query: 214 EAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQI 273
+E +++ LA + +L GDMRK +NILQS +++ +T++A++L TG+ ++++
Sbjct: 183 NSENFSISDNSLATIQKLGEGDMRKTVNILQSVSLSASVVTDDAIHLITGHVGQLQVDEL 242
Query: 274 SYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEY 333
+LLNE +F+ + +K + ALVDIV+ ++ + + M + R RL+ L+DIEY
Sbjct: 243 LRFLLNEPLQGTFEHFNRLKCTQNFALVDIVKPLSESLLTLHMAAGTRARLLRGLSDIEY 302
Query: 334 RLSFGCNDKLQLGSIISTFTQAR 356
LSF C++K Q +IS F QAR
Sbjct: 303 SLSFACSEKNQTLYLISLFHQAR 325
>gi|312372786|gb|EFR20672.1| hypothetical protein AND_19724 [Anopheles darlingi]
Length = 335
Score = 337 bits (864), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 166/299 (55%), Positives = 221/299 (73%), Gaps = 5/299 (1%)
Query: 64 TIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ-YHNMILELNASDDRGIDVVR 122
T ++ E +LPHLL YGPPGTGKTSTILA AR+LY Q + +M+LELNASDDRGI++VR
Sbjct: 40 TFNKFIKEEQLPHLLFYGPPGTGKTSTILACARQLYKPQSFGSMVLELNASDDRGINIVR 99
Query: 123 QQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVN 182
QI DFAST++ K KL++LDEADAMT DAQ ALRR+IEKYT+N RF +ICN ++
Sbjct: 100 GQILDFASTRTI---FKGGYKLIILDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLS 156
Query: 183 KIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNI 242
KIIPA+QSRCTRFRFAPL + RL+HVIEAEG++ TE G AL+ L GDMRK LN+
Sbjct: 157 KIIPAIQSRCTRFRFAPLGVEQILPRLEHVIEAEGIEATEDGKKALITLAGGDMRKVLNV 216
Query: 243 LQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLN-ESFADSFKRISEMKMRKGLALV 301
LQST MA + +TE VY C G+PL +DI I +WLLN ESF +++I ++K +KGLAL
Sbjct: 217 LQSTWMAYKSVTEINVYNCVGHPLKEDINDIIFWLLNEESFKTCYEKIQQLKTQKGLALE 276
Query: 302 DIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDKLQLGSIISTFTQARSAIV 360
DI+ E+ + + ++++P V +L+ LA IE RL+ GC +K Q+ ++IS F++ R ++
Sbjct: 277 DILTEIHLVINRLEIPPRVSSQLLITLASIEERLADGCVEKPQIAALISAFSKVRELVI 335
>gi|430814133|emb|CCJ28598.1| unnamed protein product [Pneumocystis jirovecii]
Length = 350
Score = 336 bits (862), Expect = 8e-90, Method: Compositional matrix adjust.
Identities = 171/327 (52%), Positives = 227/327 (69%), Gaps = 14/327 (4%)
Query: 27 KNVIVSGTPPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTG 86
K ++ S T D PWVEKYRP+ L ++ +H+DI+ TI+ +NR+PHLL YGPPGTG
Sbjct: 25 KKILESDTKHDGSTLPWVEKYRPEDLKEIVSHQDIILTIEEFIKKNRIPHLLFYGPPGTG 84
Query: 87 KTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFAST-QSFSFGVKASVKLV 145
KTSTILA A+K+YG ++ N +LELNASD+RGIDVVR+QI++FAST Q F+ G K LV
Sbjct: 85 KTSTILACAKKIYGPKFRNQLLELNASDERGIDVVREQIKNFASTKQIFNSGFK----LV 140
Query: 146 LLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHV 205
+LDEADAMT AQ ALRRVIEKYTKN RF +ICN VNKI A+QSRCTRFRF PL +
Sbjct: 141 ILDEADAMTLAAQNALRRVIEKYTKNVRFCIICNYVNKISLAIQSRCTRFRFQPLSSKEI 200
Query: 206 TERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNP 265
+L +VI+ E ++++E G A LV+L +GDMRK LNILQ+ H A I E+AVY C GNP
Sbjct: 201 CLKLDYVIKNENINISEKGKAELVKLADGDMRKGLNILQACHAAYDFIDEDAVYNCVGNP 260
Query: 266 LPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLM 325
P+ IE I L N+ F I ++K +GLAL+DI+ V + ++++P +++ R
Sbjct: 261 HPEIIELIVKSLFNDEFLICLNTIIKVKTERGLALLDIITGVYEVLDELELPINLQYR-- 318
Query: 326 NDLADIEYRLSFGCNDKLQLGSIISTF 352
YRLS G ++K+QL ++I T
Sbjct: 319 -------YRLSNGASEKIQLSAMIGTI 338
>gi|345484012|ref|XP_001599543.2| PREDICTED: replication factor C subunit 5-like [Nasonia
vitripennis]
Length = 285
Score = 336 bits (861), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 161/282 (57%), Positives = 208/282 (73%), Gaps = 7/282 (2%)
Query: 31 VSGTPPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTST 90
V+ T P++ PWVEKYRP L D+ +H +I+ TI++ EN+LPHLLLYGPPGTGKTST
Sbjct: 5 VAKTTPNL---PWVEKYRPSKLDDLISHEEIIQTINKFIDENQLPHLLLYGPPGTGKTST 61
Query: 91 ILAVARKLYGAQ-YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDE 149
ILA A+KLY Q +++M+LELNASDDRGI +VR QI FAST + ++ KL++LDE
Sbjct: 62 ILACAKKLYTPQQFNSMVLELNASDDRGIGIVRGQILSFASTGTM---YRSGYKLIILDE 118
Query: 150 ADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERL 209
ADAMT DAQ ALRR+IEKYT N RF +ICN ++KIIPALQSRCT+FRF PL P + RL
Sbjct: 119 ADAMTNDAQNALRRIIEKYTDNVRFCIICNYLSKIIPALQSRCTKFRFGPLAPEQILPRL 178
Query: 210 KHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKD 269
+HVI E + VTE G AL+ L GDMRK +N+LQST +A + EE VY C G+PLP D
Sbjct: 179 EHVITEENVTVTEDGKKALMTLSGGDMRKVINVLQSTWLAFGCVNEENVYTCVGHPLPVD 238
Query: 270 IEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFV 311
I+ I WLLNES+ ++ ++ ++K +KGLAL DI+ E+ + V
Sbjct: 239 IKNIINWLLNESYEAAYNKVQDLKTKKGLALQDILTEIQVLV 280
>gi|313225768|emb|CBY07242.1| unnamed protein product [Oikopleura dioica]
Length = 329
Score = 335 bits (860), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 156/319 (48%), Positives = 224/319 (70%), Gaps = 4/319 (1%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP L D+ +H +I+ TI + +LPHLL YGPPGTGKTSTILAVA++LYGA
Sbjct: 9 PWVEKYRPNKLDDLISHTEIISTIKKFIENEQLPHLLFYGPPGTGKTSTILAVAKELYGA 68
Query: 102 Q-YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFA 160
+ M+LELNASD RGIDVVR +I +FAS++S K+++LDE DAMT+DAQ A
Sbjct: 69 KNLKKMVLELNASDARGIDVVRNEILNFASSRSLHC---KGFKVIILDECDAMTRDAQAA 125
Query: 161 LRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDV 220
LRRV+EK+TKN RF LICN + K+IPA+QSRCTRFRFAPL + R+ HV+E EG+D+
Sbjct: 126 LRRVMEKFTKNVRFCLICNYLGKLIPAIQSRCTRFRFAPLSVEQMMPRINHVVEEEGIDI 185
Query: 221 TEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNE 280
+ G+ L+++ GDMR++LNILQ++H+A ++T++ VY TG P DI ++ WLLN+
Sbjct: 186 DQNGMDLLLKMAEGDMRRSLNILQASHLAFNKVTDDIVYKVTGRPRRNDIRRMMEWLLNQ 245
Query: 281 SFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCN 340
I E+ + G+AL D++ ++ + + +P + +++ LADIEYRL+ G
Sbjct: 246 DIKYCMDSIEELMLENGIALNDVLTDLYEEICEADLPDIPKAEILSALADIEYRLNIGAT 305
Query: 341 DKLQLGSIISTFTQARSAI 359
+K+QL I++ F++ R+ +
Sbjct: 306 EKIQLAVIVAAFSKVRNTV 324
>gi|198476564|ref|XP_002132399.1| GA25212 [Drosophila pseudoobscura pseudoobscura]
gi|198137754|gb|EDY69801.1| GA25212 [Drosophila pseudoobscura pseudoobscura]
Length = 333
Score = 335 bits (858), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 170/320 (53%), Positives = 223/320 (69%), Gaps = 5/320 (1%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYG- 100
PWVEKYRP SL D+ +H +I+ TI+R S+ +LPHLL YGPPGTGKTSTILA AR+LY
Sbjct: 12 PWVEKYRPYSLDDLISHDEIILTINRFISQKQLPHLLFYGPPGTGKTSTILACARQLYPP 71
Query: 101 AQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFA 160
A + +M+LELNASDDRGI +VR QI +FAST++ + KL++LDEADAMT DAQ A
Sbjct: 72 ALFKSMVLELNASDDRGIGIVRGQILNFASTRTIFCD---TFKLIILDEADAMTNDAQNA 128
Query: 161 LRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDV 220
LRR+IEKYT N RF +ICN ++KIIPALQSRCTRFRFAPL P + RL+ ++++E + +
Sbjct: 129 LRRIIEKYTDNVRFCIICNYLSKIIPALQSRCTRFRFAPLSPDKMIPRLEQIVQSEDIKI 188
Query: 221 TEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLN- 279
TE G AL+ L GDMRK LN+LQST MA + E+ VY+C G PL +DIE I LL+
Sbjct: 189 TENGKKALLTLSKGDMRKVLNVLQSTAMAFDVVNEDNVYMCAGYPLRQDIENILKALLSG 248
Query: 280 ESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGC 339
+F SF+ + K +GLAL DI+ E+ + V +++ P V L+ LA IE RL+ GC
Sbjct: 249 HNFEVSFQNVDVAKSARGLALEDIITELHLIVMRLEFPISVMNELVVKLAHIEERLTKGC 308
Query: 340 NDKLQLGSIISTFTQARSAI 359
D +++S F R +
Sbjct: 309 TDIANTAALVSAFFICRDMV 328
>gi|195146716|ref|XP_002014330.1| GL19009 [Drosophila persimilis]
gi|194106283|gb|EDW28326.1| GL19009 [Drosophila persimilis]
Length = 333
Score = 334 bits (857), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 170/320 (53%), Positives = 223/320 (69%), Gaps = 5/320 (1%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYG- 100
PWVEKYRP SL D+ +H +I+ TI+R S+ +LPHLL YGPPGTGKTSTILA AR+LY
Sbjct: 12 PWVEKYRPYSLDDLISHDEIILTINRFISQKQLPHLLYYGPPGTGKTSTILACARQLYPP 71
Query: 101 AQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFA 160
A + +M+LELNASDDRGI +VR QI +FAST++ + KL++LDEADAMT DAQ A
Sbjct: 72 ALFKSMVLELNASDDRGIGIVRGQILNFASTRTIFCD---TFKLIILDEADAMTNDAQNA 128
Query: 161 LRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDV 220
LRR+IEKYT N RF +ICN ++KIIPALQSRCTRFRFAPL P + RL+ ++++E + +
Sbjct: 129 LRRIIEKYTDNVRFCIICNYLSKIIPALQSRCTRFRFAPLSPDKMIPRLEQIVQSEDIKI 188
Query: 221 TEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLN- 279
TE G AL+ L GDMRK LN+LQST MA + E+ VY+C G PL +DIE I LL+
Sbjct: 189 TENGKKALLTLSKGDMRKVLNVLQSTAMAFDVVNEDNVYMCAGYPLRQDIENILKALLSG 248
Query: 280 ESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGC 339
+F SF+ + K +GLAL DI+ E+ + V +++ P V L+ LA IE RL+ GC
Sbjct: 249 HNFEVSFQNVDVAKSARGLALEDIITELHLIVMRLEFPISVMNELVVKLAHIEERLTKGC 308
Query: 340 NDKLQLGSIISTFTQARSAI 359
D +++S F R +
Sbjct: 309 TDIANTAALVSAFFICRDMV 328
>gi|313212534|emb|CBY36498.1| unnamed protein product [Oikopleura dioica]
gi|313219619|emb|CBY30541.1| unnamed protein product [Oikopleura dioica]
Length = 329
Score = 333 bits (854), Expect = 7e-89, Method: Compositional matrix adjust.
Identities = 155/319 (48%), Positives = 224/319 (70%), Gaps = 4/319 (1%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP L D+ +H +I+ TI + +LPHLL YGPPGTGKTSTILAVA++LYGA
Sbjct: 9 PWVEKYRPNKLDDLISHTEIISTIKKFIDNEQLPHLLFYGPPGTGKTSTILAVAKELYGA 68
Query: 102 Q-YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFA 160
+ M+LELNASD RGI+VVR +I +FAS++S K+++LDE DAMT+DAQ A
Sbjct: 69 KNLKKMVLELNASDARGINVVRNEILNFASSRSLHC---KGFKVIILDECDAMTRDAQAA 125
Query: 161 LRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDV 220
LRRV+EK+TKN RF LICN + K+IPA+QSRCTRFRFAPL + R+ HV+E EG+D+
Sbjct: 126 LRRVMEKFTKNVRFCLICNYLGKLIPAIQSRCTRFRFAPLSVEQMMPRINHVVEEEGIDI 185
Query: 221 TEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNE 280
+ G+ L+++ GDMR++LNILQ++H+A ++T++ VY TG P DI ++ WLLN+
Sbjct: 186 DQNGMDLLLKMAEGDMRRSLNILQASHLAFNKVTDDIVYKVTGRPRRNDIRRMMEWLLNQ 245
Query: 281 SFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCN 340
I E+ + G+AL D++ ++ + + +P + +++ LADIEYRL+ G
Sbjct: 246 DIKYCMDSIEELMLENGIALNDVLTDLYEEICEADLPDIPKAEILSALADIEYRLNIGAT 305
Query: 341 DKLQLGSIISTFTQARSAI 359
+K+QL I++ F++ R+ +
Sbjct: 306 EKIQLAVIVAAFSKVRNTV 324
>gi|407408177|gb|EKF31712.1| replication factor C, subunit 3, putative [Trypanosoma cruzi
marinkellei]
Length = 355
Score = 333 bits (853), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 168/345 (48%), Positives = 227/345 (65%), Gaps = 13/345 (3%)
Query: 24 DNGKNVIVSGTPPDIKAS--PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYG 81
+ GKN V +K+S PWVEKYRP +L +V AH DI+ T RL LPHLL YG
Sbjct: 3 NEGKNSTVH----TVKSSTLPWVEKYRPVTLDEVVAHEDILSTTRRLMDSGNLPHLLFYG 58
Query: 82 PPGTGKTSTILAVARKLYGA-QYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVK- 139
PPGTGKT+TI A A L+G + +LE+NASDDRGIDVVRQQ+++FAST SF F
Sbjct: 59 PPGTGKTTTIKACAYYLFGKDRIRANVLEMNASDDRGIDVVRQQVREFASTSSFYFASAP 118
Query: 140 -----ASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTR 194
A+ KLV+LDEAD M+ DAQ ALRR+IEKYTKN RF ++CN +NKIIPALQSRCTR
Sbjct: 119 AASTIAAFKLVILDEADQMSGDAQAALRRIIEKYTKNVRFCILCNHINKIIPALQSRCTR 178
Query: 195 FRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQIT 254
FRFAP++ + RLK V + EG+ T+GGL A RL NGD+R+ LN +Q++ M++ +IT
Sbjct: 179 FRFAPVKKNAMLPRLKFVAQEEGVRFTDGGLVAAFRLSNGDLRRCLNTMQASAMSAGEIT 238
Query: 255 EEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKI 314
EE+VY TGNP P D+ I ++ FA S++++ + KG++ D+VREV V +
Sbjct: 239 EESVYRVTGNPTPADVRGIVEDMIAHDFAASWEKVQQTVSEKGVSSTDLVREVHHIVMAM 298
Query: 315 KMPSDVRVRLMNDLADIEYRLSFGCNDKLQLGSIISTFTQARSAI 359
+P + + L+ LAD+EY + G + + I+ F + A+
Sbjct: 299 DLPQESKCFLLMKLADVEYYAAGGAKETTCISGILGAFQLVKEAL 343
>gi|71745690|ref|XP_827475.1| replication factor C subunit 3 [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
gi|70831640|gb|EAN77145.1| replication factor C, subunit 3, putative [Trypanosoma brucei
brucei strain 927/4 GUTat10.1]
gi|261331678|emb|CBH14672.1| replication factor C, subunit 3, putative [Trypanosoma brucei
gambiense DAL972]
Length = 357
Score = 332 bits (852), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 158/341 (46%), Positives = 229/341 (67%), Gaps = 7/341 (2%)
Query: 26 GKNVIVSGTPPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGT 85
G+ + +G P PWVEKYRP +L DV AH +I+DT RL + +PHLL YGPPGT
Sbjct: 3 GEGTLSNGQPAKNSTLPWVEKYRPTTLDDVVAHEEILDTTRRLMNSGSMPHLLFYGPPGT 62
Query: 86 GKTSTILAVARKLYGAQ-YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFG------V 138
GKT+TI A A L+G + +LE+NASDDRGIDVVRQQ+++FAST S F
Sbjct: 63 GKTTTIKACAHHLFGKERLRANVLEMNASDDRGIDVVRQQVREFASTSSIFFQNNPGNQT 122
Query: 139 KASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFA 198
+ KLV+LDEAD M+ DAQ ALRR+IEK+TKN RF ++CN +NKIIPALQSRCTRFRF+
Sbjct: 123 VTNFKLVILDEADQMSSDAQAALRRIIEKFTKNVRFCILCNHINKIIPALQSRCTRFRFS 182
Query: 199 PLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAV 258
P++ + RLK + EG+ T+ GL + RL +GDMR+ LN +Q++ M++ +ITEE+V
Sbjct: 183 PVKKSAMLPRLKLIAREEGVPFTDEGLISAFRLSDGDMRRCLNTMQASSMSAGEITEESV 242
Query: 259 YLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPS 318
Y TGNP P D+ + +L+ ++A S++++ ++ + KG++ D+VREV + V + +P
Sbjct: 243 YRTTGNPTPTDVRVMVGDMLSHNYATSWEKVQQLVVDKGVSTADLVREVHLIVMAMDLPQ 302
Query: 319 DVRVRLMNDLADIEYRLSFGCNDKLQLGSIISTFTQARSAI 359
D + L+ LAD+EY + G + + +G ++ F + A+
Sbjct: 303 DCKCFLLIKLADVEYYAAGGTREMINIGGVLGAFQLVKEAL 343
>gi|449018110|dbj|BAM81512.1| replication factor C subunit 5 [Cyanidioschyzon merolae strain 10D]
Length = 366
Score = 332 bits (850), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 163/337 (48%), Positives = 231/337 (68%), Gaps = 6/337 (1%)
Query: 25 NGKNVIVSGTPPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPG 84
NG+ ++ T + + WVEKYRP+ L ++ AH +I T+ RL +E LPHLL YGPPG
Sbjct: 4 NGR---LTATQSEQSETIWVEKYRPRELDEIVAHDEIRGTLRRLIAERTLPHLLFYGPPG 60
Query: 85 TGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKL 144
TGKT+ ILA AR+++GAQ+ M+LELNASDDRGIDVVR+QI+ FAST+ + +KA +KL
Sbjct: 61 TGKTTAILACAREMFGAQFKTMVLELNASDDRGIDVVREQIKTFASTRHI-YALKAGIKL 119
Query: 145 VLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVH 204
V+LDEADAMT AQ ALRR++EKYT N RF LICN NKIIPA+QSRCTRFRF P+
Sbjct: 120 VILDEADAMTSAAQAALRRIMEKYTSNIRFCLICNYANKIIPAIQSRCTRFRFQPVPVAQ 179
Query: 205 VTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHM--ASQQITEEAVYLCT 262
+ +RL+++ + EG+ V AL R+ GDMR+A+ ++QST + AS ++TE+ VY
Sbjct: 180 MIQRLEYIADREGVPVDRAAFDALARIAQGDMRRAIYLMQSTFLASASARVTEDGVYANA 239
Query: 263 GNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRV 322
G P P D+ I+ LL + FA +F +ISE+K KG AL+D++ + V +++ V+
Sbjct: 240 GMPSPADLHAIAQILLYDPFAQAFCKISEIKKGKGFALLDMIHGLHEAVMLMELSPKVKA 299
Query: 323 RLMNDLADIEYRLSFGCNDKLQLGSIISTFTQARSAI 359
L LA++E+RL ++++QL +++ F A S I
Sbjct: 300 FLFEQLANMEWRLVSATSERIQLAALVGIFRLAASMI 336
>gi|407847432|gb|EKG03143.1| replication factor C, subunit 3, putative [Trypanosoma cruzi]
Length = 355
Score = 330 bits (846), Expect = 6e-88, Method: Compositional matrix adjust.
Identities = 162/325 (49%), Positives = 218/325 (67%), Gaps = 7/325 (2%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP +L +V AH DI+ T RL LPHLL YGPPGTGKT+TI A A L+G
Sbjct: 19 PWVEKYRPVTLDEVVAHEDILSTTRRLMDSGNLPHLLFYGPPGTGKTTTIKACAYYLFGK 78
Query: 102 -QYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVK------ASVKLVLLDEADAMT 154
+ +LE+NASDDRGIDVVRQQ+++FAST SF F A+ KLV+LDEAD M+
Sbjct: 79 DRIRANVLEMNASDDRGIDVVRQQVREFASTSSFYFASTPAAPTIAAFKLVILDEADQMS 138
Query: 155 KDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIE 214
DAQ ALRR+IEKYTKN RF ++CN +NKIIPALQSRCTRFRFAP++ + RLK V +
Sbjct: 139 GDAQAALRRIIEKYTKNVRFCILCNHINKIIPALQSRCTRFRFAPVKKSAMLSRLKFVAQ 198
Query: 215 AEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQIS 274
EG+ T+ GL A RL NGD+R+ LN LQ++ M++ +ITEE+VY TGNP P D+ I
Sbjct: 199 EEGVRFTDEGLVAAFRLSNGDLRRCLNTLQASAMSAGEITEESVYRVTGNPTPADVRGIV 258
Query: 275 YWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYR 334
++ FA S++++ ++ KG++ D+VREV V + +P + + L+ LAD+EY
Sbjct: 259 EDMIAHDFAASWEKVHQIVSEKGVSSTDLVREVHHIVMAMDLPQESKCFLLMKLADVEYY 318
Query: 335 LSFGCNDKLQLGSIISTFTQARSAI 359
+ G + + I+ F + A+
Sbjct: 319 AAGGAKETTCISGILGAFQLVKEAL 343
>gi|71662047|ref|XP_818036.1| replication factor C, subunit 3 [Trypanosoma cruzi strain CL
Brener]
gi|70883263|gb|EAN96185.1| replication factor C, subunit 3, putative [Trypanosoma cruzi]
Length = 355
Score = 329 bits (844), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 162/325 (49%), Positives = 217/325 (66%), Gaps = 7/325 (2%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP +L +V AH DI+ T RL LPHLL YGPPGTGKT+TI A A L+G
Sbjct: 19 PWVEKYRPVTLDEVVAHEDILSTTRRLMDSGNLPHLLFYGPPGTGKTTTIKACAYYLFGK 78
Query: 102 -QYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVK------ASVKLVLLDEADAMT 154
+ +LE+NASDDRGIDVVRQQ+++FAST SF F A+ KLV+LDEAD M+
Sbjct: 79 DRIRANVLEMNASDDRGIDVVRQQVREFASTSSFYFASAPAAPTIAAFKLVILDEADQMS 138
Query: 155 KDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIE 214
DAQ ALRR+IEKYTKN RF ++CN +NKIIPALQSRCTRFRFAP++ + RLK V +
Sbjct: 139 GDAQAALRRIIEKYTKNVRFCILCNHINKIIPALQSRCTRFRFAPVKKSAMLSRLKFVAQ 198
Query: 215 AEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQIS 274
EG+ T+ GL A RL NGD+R+ LN LQ++ M++ +ITEE+VY TGNP P D+ I
Sbjct: 199 EEGVRFTDEGLVAAFRLSNGDLRRCLNTLQASAMSAGEITEESVYRVTGNPTPADVRGIV 258
Query: 275 YWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYR 334
++ FA S++++ + KG++ D+VREV V + +P + + L+ LAD+EY
Sbjct: 259 EDMIAHDFAASWEKVHQTVSEKGVSSTDLVREVHHIVMAMDLPQESKCFLLMKLADVEYY 318
Query: 335 LSFGCNDKLQLGSIISTFTQARSAI 359
+ G + + I+ F + A+
Sbjct: 319 AAGGAKETTCISGILGAFQLVKEAL 343
>gi|328874863|gb|EGG23228.1| replication factor C subunit [Dictyostelium fasciculatum]
Length = 368
Score = 327 bits (839), Expect = 4e-87, Method: Compositional matrix adjust.
Identities = 169/351 (48%), Positives = 221/351 (62%), Gaps = 40/351 (11%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP+SL ++ +H DI+DTI +L +N LPHLL YGPPGTGKTSTI AVARKLYG
Sbjct: 22 PWVEKYRPKSLKELISHEDIIDTITKLIDKNSLPHLLFYGPPGTGKTSTIQAVARKLYGD 81
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGV--KASVKLVLLDEADAMTKDAQF 159
Y M+LELNASDDRGIDVVR+QI+ FA S G+ KL++LDEAD+MT AQ
Sbjct: 82 NYSRMVLELNASDDRGIDVVREQIKSFAG----SMGIFNTNQFKLIILDEADSMTNAAQT 137
Query: 160 ALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLD 219
ALRRVIE YTK TRF +ICN V K+IPALQSRCTRFRF L +R+K ++E E D
Sbjct: 138 ALRRVIETYTKTTRFCMICNYVGKLIPALQSRCTRFRFGRLGKPQSIKRIKEIVEQEKYD 197
Query: 220 ------------------------------VTEGGLAALVRLCNGDMRKALNILQSTHMA 249
+++ + ++ L GDMRK+LN+LQS M+
Sbjct: 198 IIMTDKLPINIFQTHTDCPPIHSNVMFRMNISDEAITSIELLAEGDMRKSLNLLQSVSMS 257
Query: 250 SQ---QITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVRE 306
S QIT+ +Y C G P ++ QI W + E F +++K +S MK KG +LVDI+++
Sbjct: 258 SDDGVQITDADIYRCAGVPSKRETVQILQWCIGEDFDEAYKNLSNMKKEKGFSLVDIIKD 317
Query: 307 VTMFVFKIK-MPSDVRVRLMNDLADIEYRLSFGCNDKLQLGSIISTFTQAR 356
V++ + K + M + +LA+IEY LSFG ++KLQLG + F AR
Sbjct: 318 VSVLIHKARNMDERAITSISKELAEIEYNLSFGASEKLQLGYFVGAFQSAR 368
>gi|71413122|ref|XP_808715.1| replication factor C, subunit 3 [Trypanosoma cruzi strain CL
Brener]
gi|70872975|gb|EAN86864.1| replication factor C, subunit 3, putative [Trypanosoma cruzi]
Length = 355
Score = 327 bits (838), Expect = 6e-87, Method: Compositional matrix adjust.
Identities = 160/325 (49%), Positives = 217/325 (66%), Gaps = 7/325 (2%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP +L +V AH DI+ T RL LPHLL YGPPGTGKT+TI A A L+G
Sbjct: 19 PWVEKYRPVTLDEVVAHEDILSTTRRLMDSGNLPHLLFYGPPGTGKTTTIKACAYYLFGK 78
Query: 102 -QYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVK------ASVKLVLLDEADAMT 154
+ +LE+NASDDRGIDVVRQQ+++F+ST SF F A+ KLV+LDEAD M+
Sbjct: 79 DRIRANVLEMNASDDRGIDVVRQQVREFSSTSSFYFASAPAAPTIAAFKLVILDEADQMS 138
Query: 155 KDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIE 214
DAQ ALRR+IEKYTKN RF ++CN +NKIIPALQSRCTRFRFAP++ + RLK V +
Sbjct: 139 GDAQAALRRIIEKYTKNVRFCILCNHINKIIPALQSRCTRFRFAPVKKSAMLPRLKFVAQ 198
Query: 215 AEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQIS 274
EG+ T+ GL A RL NGD+R+ LN +Q++ M++ +ITEE+VY TGNP P D+ I
Sbjct: 199 EEGVRFTDEGLVAAFRLSNGDLRRCLNTMQASAMSAGEITEESVYRVTGNPTPADVRGIV 258
Query: 275 YWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYR 334
++ FA S++++ + KG++ D+VREV V + +P + + L+ LAD+EY
Sbjct: 259 EDMIAHDFAASWEKVQQTVSEKGVSSTDLVREVHHIVMAMDLPQESKCFLLMKLADVEYY 318
Query: 335 LSFGCNDKLQLGSIISTFTQARSAI 359
+ G + + I+ F + A+
Sbjct: 319 AAGGAKETTCISGILGAFQLVKEAL 343
>gi|452819401|gb|EME26461.1| replication factor C subunit 3/5 [Galdieria sulphuraria]
Length = 330
Score = 326 bits (836), Expect = 9e-87, Method: Compositional matrix adjust.
Identities = 160/312 (51%), Positives = 215/312 (68%), Gaps = 6/312 (1%)
Query: 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 102
W+EKYRP++ DV + +DI+ TI R + N LPH+L YGPPGTGKTSTILA A +YG
Sbjct: 10 WLEKYRPKTFNDVLSQQDIIVTILRFVNSNSLPHMLFYGPPGTGKTSTILACAEHMYGTN 69
Query: 103 YHNMILELNASDDRGIDVVRQQIQDFASTQS-FSFGVKASVKLVLLDEADAMTKDAQFAL 161
+ +M+LELNASDDRGIDVVR +I+DF STQ F+ GVK LV+LDEADAMT AQ AL
Sbjct: 70 FKSMVLELNASDDRGIDVVRNEIKDFCSTQRIFATGVK----LVILDEADAMTSAAQMAL 125
Query: 162 RRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVT 221
RR++EKYT +TRF LICN NKIIPALQSRCTRFRF PL+ + RL + E EG+
Sbjct: 126 RRIMEKYTSSTRFCLICNYANKIIPALQSRCTRFRFGPLKEEDIRLRLGQIAEREGVVFE 185
Query: 222 EGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNE- 280
+ L +++L GDMR +NILQST ++S ++T VY TGNP +++EQI WL E
Sbjct: 186 KDALETIIQLSQGDMRSCINILQSTFLSSGKVTCSTVYENTGNPSNEEMEQIMDWLNEED 245
Query: 281 SFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCN 340
F+ + ++ +MK +G AL+DI+R++ + M + L+ LADIE++ +FG +
Sbjct: 246 DFSSCYDKVKKMKAERGFALIDILRQIHKRLLTRNMSRRAKAYLLEKLADIEHQFAFGGS 305
Query: 341 DKLQLGSIISTF 352
+ L L S+I +F
Sbjct: 306 ELLNLCSLIGSF 317
>gi|452824858|gb|EME31858.1| replication factor C subunit [Galdieria sulphuraria]
Length = 330
Score = 326 bits (836), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 160/312 (51%), Positives = 215/312 (68%), Gaps = 6/312 (1%)
Query: 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 102
W+EKYRP++ DV + +DI+ TI R + N LPH+L YGPPGTGKTSTILA A +YG
Sbjct: 10 WLEKYRPKTFNDVLSQQDIIVTILRFVNSNSLPHMLFYGPPGTGKTSTILACAEHMYGTN 69
Query: 103 YHNMILELNASDDRGIDVVRQQIQDFASTQS-FSFGVKASVKLVLLDEADAMTKDAQFAL 161
+ +M+LELNASDDRGIDVVR +I+DF STQ F+ GVK LV+LDEADAMT AQ AL
Sbjct: 70 FKSMVLELNASDDRGIDVVRNEIKDFCSTQRIFATGVK----LVILDEADAMTSAAQMAL 125
Query: 162 RRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVT 221
RR++EKYT +TRF LICN NKIIPALQSRCTRFRF PL+ + RL + E EG+
Sbjct: 126 RRIMEKYTTSTRFCLICNYANKIIPALQSRCTRFRFGPLKEEDIRLRLGQIAEREGVVFE 185
Query: 222 EGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNE- 280
+ L +++L GDMR +NILQST ++S ++T VY TGNP +++EQI WL E
Sbjct: 186 KDALETIIQLSQGDMRSCINILQSTFLSSGKVTCSTVYENTGNPSNEEMEQIMDWLNEED 245
Query: 281 SFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCN 340
F+ + ++ +MK +G AL+DI+R++ + M + L+ LADIE++ +FG +
Sbjct: 246 DFSSCYDKVKKMKAERGFALIDILRQIHKRLLTRNMSRRAKAYLLEKLADIEHQFAFGGS 305
Query: 341 DKLQLGSIISTF 352
+ L L S+I +F
Sbjct: 306 ELLNLCSLIGSF 317
>gi|146161442|ref|XP_001007155.2| hypothetical protein TTHERM_00213600 [Tetrahymena thermophila]
gi|146146775|gb|EAR86910.2| hypothetical protein TTHERM_00213600 [Tetrahymena thermophila
SB210]
Length = 345
Score = 326 bits (835), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 159/322 (49%), Positives = 222/322 (68%), Gaps = 8/322 (2%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENR-LPHLLLYGPPGTGKTSTILAVARKLYG 100
PWVEKYRP++L +V +H IV TI + E++ LP+LL YGPPGTGKTS I+A+A++LYG
Sbjct: 19 PWVEKYRPENLDNVISHEYIVATIKKFIEEDKKLPNLLFYGPPGTGKTSLIVALAKQLYG 78
Query: 101 AQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFA 160
Y ++LELNASDDRGIDVVR+QI+ FAST +F V KL++LDEAD+MT AQFA
Sbjct: 79 KNYKQLVLELNASDDRGIDVVREQIKTFASTANFGM-VGKGTKLIILDEADSMTNQAQFA 137
Query: 161 LRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDV 220
LRR+IEKY+ N RF +ICN V+KIIPALQSRCTRF+F + R+ + AE L
Sbjct: 138 LRRIIEKYSSNARFCMICNYVSKIIPALQSRCTRFKFKHIPYQDAKLRIAQICNAENLKY 197
Query: 221 TEGGLAALVRLCNGDMRKALNILQSTHMASQ------QITEEAVYLCTGNPLPKDIEQIS 274
G+ A+ +LC+GDMR+ +N+LQS + +IT+E VY TGN PKDIE I
Sbjct: 198 KNSGIEAVFKLCDGDMRRVVNMLQSLSLQGYGSDEQVEITDELVYKFTGNATPKDIENII 257
Query: 275 YWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYR 334
+ N+S ++S++ I ++ KG++L +++E+++F+ PS L+ LAD+EYR
Sbjct: 258 NTMNNKSISESYEIIQSYQVEKGISLQVMLKEISLFLMNTSYPSLALEFLVKRLADLEYR 317
Query: 335 LSFGCNDKLQLGSIISTFTQAR 356
+S C++K+Q S+IS FT+ R
Sbjct: 318 MSINCDEKVQTLSLISAFTEVR 339
>gi|389594993|ref|XP_003722719.1| putative replication factor C, subunit 3 [Leishmania major strain
Friedlin]
gi|323363947|emb|CBZ12953.1| putative replication factor C, subunit 3 [Leishmania major strain
Friedlin]
Length = 364
Score = 324 bits (831), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 161/332 (48%), Positives = 219/332 (65%), Gaps = 14/332 (4%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYG- 100
PWVEKYRP +L V AH DI+ T+ L +PHLLLYGPPGTGKT+TI A A LYG
Sbjct: 18 PWVEKYRPSTLESVVAHEDILSTLRHLMDSGNMPHLLLYGPPGTGKTTTIKACAYYLYGK 77
Query: 101 AQYHNMILELNASDDRGIDVVRQQIQDFASTQSF-------------SFGVKASVKLVLL 147
A+ +LE+NASDDRGIDVVRQQ ++FAST S S G A KLV+L
Sbjct: 78 ARVRANVLEMNASDDRGIDVVRQQTREFASTSSIFSMMGTGSSTGGGSGGPAAKFKLVIL 137
Query: 148 DEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTE 207
DEAD M+ DAQ ALRRVIEKYT+N RF ++CN +NKIIPALQSRCTRFRFAP++ +
Sbjct: 138 DEADQMSHDAQAALRRVIEKYTRNVRFCILCNHINKIIPALQSRCTRFRFAPVKKSSMMP 197
Query: 208 RLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLP 267
RL++V E EG+ T GLAA RL +GD+R+ LN +Q++ +++ +ITEE+VY TGNP P
Sbjct: 198 RLRYVAEQEGVKYTTDGLAAAFRLSHGDLRRCLNTMQASALSANEITEESVYRVTGNPTP 257
Query: 268 KDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMND 327
D+ I +L+ FA S+ + E ++KG+++ D+ RE+ + + +P D + L+
Sbjct: 258 ADVTAIVSDMLSSDFATSWVKAEESVVQKGISMADLTREIHPVMMAMDLPQDCKCFLLMK 317
Query: 328 LADIEYRLSFGCNDKLQLGSIISTFTQARSAI 359
L+D+EY + G + LG ++ F + A+
Sbjct: 318 LSDLEYYAAGGARESAVLGGLLGAFQLVKEAV 349
>gi|401429678|ref|XP_003879321.1| putative replication factor C, subunit 3 [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322495571|emb|CBZ30876.1| putative replication factor C, subunit 3 [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 364
Score = 324 bits (830), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 160/332 (48%), Positives = 217/332 (65%), Gaps = 14/332 (4%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP +L V AH DI+ T+ L +PHLLLYGPPGTGKT+TI A A LYG
Sbjct: 18 PWVEKYRPSTLESVVAHEDILSTLRHLMDSGNMPHLLLYGPPGTGKTTTIKACAYYLYGK 77
Query: 102 -QYHNMILELNASDDRGIDVVRQQIQDFASTQSF-------------SFGVKASVKLVLL 147
+ +LE+NASDDRGIDVVRQQ ++FAST S G A KLV+L
Sbjct: 78 DRVRANVLEMNASDDRGIDVVRQQTREFASTSSIFSMMGSGSSTGSGGGGPAAKFKLVIL 137
Query: 148 DEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTE 207
DEAD M+ DAQ ALRRVIEKYT+N RF ++CN +NKIIPALQSRCTRFRFAP++ +
Sbjct: 138 DEADQMSYDAQAALRRVIEKYTRNVRFCILCNHINKIIPALQSRCTRFRFAPVKKSAMMP 197
Query: 208 RLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLP 267
RL++V E EG+ T GLAA RL GD+R+ LN +QS+ +++ +ITEE+VY TGNP P
Sbjct: 198 RLRYVAEQEGVKYTTDGLAAAFRLSRGDLRRCLNTMQSSALSANEITEESVYRVTGNPTP 257
Query: 268 KDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMND 327
D+ I +L+ FA S+ ++ E ++KG+++ D+ RE+ + + +P D + L+
Sbjct: 258 ADVTAIVSDMLSSDFATSWIKVEEGVLQKGISMADLTREIHPIMMAMDLPQDCKCFLLMK 317
Query: 328 LADIEYRLSFGCNDKLQLGSIISTFTQARSAI 359
L+D+EY + G + LG ++ F + A+
Sbjct: 318 LSDLEYYAAGGARESAGLGGLLGAFQLVKEAV 349
>gi|294464739|gb|ADE77876.1| unknown [Picea sitchensis]
Length = 200
Score = 324 bits (830), Expect = 5e-86, Method: Compositional matrix adjust.
Identities = 149/200 (74%), Positives = 177/200 (88%)
Query: 165 IEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGG 224
+EKYTK+TRFALICN VNKIIPALQSRCTRFRFAPL+P +VTERL+HVI E LDVTE G
Sbjct: 1 MEKYTKSTRFALICNYVNKIIPALQSRCTRFRFAPLDPANVTERLRHVISEERLDVTEDG 60
Query: 225 LAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESFAD 284
L+A+VRL GDMRKALNILQST MAS +TEEAVYLCTGNP+PKDIEQIS+WLLNESF +
Sbjct: 61 LSAIVRLSCGDMRKALNILQSTQMASPHVTEEAVYLCTGNPMPKDIEQISFWLLNESFTN 120
Query: 285 SFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDKLQ 344
+++ ISEMK KGLALVD++RE+ +F+F IKMP+ +RV+L+N LADIEYRL+FG N+KLQ
Sbjct: 121 AYRYISEMKTSKGLALVDVIREIPLFIFNIKMPAAIRVQLINALADIEYRLAFGTNEKLQ 180
Query: 345 LGSIISTFTQARSAIVAAAK 364
LGS++S FT AR A+VAAAK
Sbjct: 181 LGSLVSAFTHARCALVAAAK 200
>gi|403342743|gb|EJY70695.1| Replication factor C subunit 5 [Oxytricha trifallax]
Length = 324
Score = 323 bits (829), Expect = 7e-86, Method: Compositional matrix adjust.
Identities = 153/318 (48%), Positives = 218/318 (68%), Gaps = 4/318 (1%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYG- 100
P+VEKYRP L + +H +I+ T+ R ++PHLL +GPPGTGKTS ++A+A+ LYG
Sbjct: 6 PFVEKYRPNDLESIISHDEIITTVRRFIETRKMPHLLFHGPPGTGKTSCVIAIAKHLYGK 65
Query: 101 AQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFA 160
A+Y NMILELNASDDRGI+VVR+QI+ F STQ + +KLV+LDE D+MT AQFA
Sbjct: 66 AEYKNMILELNASDDRGINVVREQIKSFCSTQQL---MSKGIKLVILDECDSMTSSAQFA 122
Query: 161 LRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDV 220
LRR++EKYTK TRF ICN V+KIIPALQSRCTRFRF PL+ ++ +L + E E L +
Sbjct: 123 LRRIVEKYTKTTRFCFICNYVSKIIPALQSRCTRFRFGPLQTENILPKLHEIAELENLRL 182
Query: 221 TEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNE 280
+ ++V+L GDMRK LN+L+S +A + IT + VY TG P P DIE I L N+
Sbjct: 183 DQDAAESIVKLSGGDMRKVLNVLESCSLAHKHITLQNVYDVTGRPSPYDIENIYISLNND 242
Query: 281 SFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCN 340
D+ I+ +K K L++ DI+ E+ V + KM ++++ L++ +A+IEYR++ G +
Sbjct: 243 RLNDALNTINSLKQVKSLSVEDIISEIHKKVMQTKMLDEMKIFLISRMAEIEYRMAQGSS 302
Query: 341 DKLQLGSIISTFTQARSA 358
+++ L S++ F + RS
Sbjct: 303 ERVNLASLVGGFNEVRSV 320
>gi|154344961|ref|XP_001568422.1| putative replication factor C, subunit 3 [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134065759|emb|CAM43533.1| putative replication factor C, subunit 3 [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 364
Score = 323 bits (828), Expect = 7e-86, Method: Compositional matrix adjust.
Identities = 160/326 (49%), Positives = 213/326 (65%), Gaps = 16/326 (4%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP +L V AH DI+ T+ L + +PHLLLYGPPGTGKT+TI A A LYG
Sbjct: 18 PWVEKYRPSTLESVVAHEDILSTLRHLMNSGNMPHLLLYGPPGTGKTTTIKACAYYLYGK 77
Query: 102 -QYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGV--------------KASVKLVL 146
+ +LE+NASDDRGIDVVRQQ ++FAST S F V KLV+
Sbjct: 78 DRVRANVLEMNASDDRGIDVVRQQTREFASTTSI-FSVMGSSSSTGSGSGGSAVKFKLVI 136
Query: 147 LDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVT 206
LDEAD M+ DAQ ALRRVIEKYT+N RF L+CN +NKIIPALQSRCTRFRFAP++ +
Sbjct: 137 LDEADQMSHDAQAALRRVIEKYTRNVRFCLLCNHINKIIPALQSRCTRFRFAPVKKSAMM 196
Query: 207 ERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPL 266
RL++V E EG+ T GLAA RL GD+R+ LN +Q++ +++ +ITEE+VY TGNP
Sbjct: 197 PRLRYVAEHEGVKYTTDGLAAAYRLSQGDLRRCLNTMQASALSANEITEESVYRVTGNPT 256
Query: 267 PKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMN 326
P D+ I +L+ FA S+ + E +KG+++ D+ RE+ V + +P D + L+
Sbjct: 257 PADVTTIVSHMLSSDFATSWIKTEEAVTQKGISMADLTREIHPVVMAMDLPQDCKCFLLM 316
Query: 327 DLADIEYRLSFGCNDKLQLGSIISTF 352
L+D+EY + G + LG ++ F
Sbjct: 317 KLSDLEYYAAGGARESAGLGGLLGAF 342
>gi|391342410|ref|XP_003745513.1| PREDICTED: replication factor C subunit 5-like [Metaseiulus
occidentalis]
Length = 327
Score = 322 bits (826), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 163/324 (50%), Positives = 223/324 (68%), Gaps = 7/324 (2%)
Query: 37 DIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVAR 96
D+ PWVEKYRP++L D+ AH DI+ TIDR +++R PHLL YGPPGTGKTSTILA AR
Sbjct: 4 DLHNLPWVEKYRPKTLDDLIAHEDIISTIDRFVTQDRFPHLLFYGPPGTGKTSTILATAR 63
Query: 97 KLY-GAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTK 155
+LY ++ +M+LELNASDDRGI +VR +I +FAST++ F K KL++LDEADAMT
Sbjct: 64 QLYEPKEFSSMVLELNASDDRGIGIVRGEILNFASTRTI-FNKK--FKLIILDEADAMTH 120
Query: 156 DAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEA 215
DAQ ALRRVIEKY N RF +ICN ++KIIP LQSRCTRFRF PL + R++ VI+
Sbjct: 121 DAQNALRRVIEKYADNARFCIICNYLSKIIPPLQSRCTRFRFGPLSVSQMVPRIEMVIKT 180
Query: 216 EGLDVTEGGLAALVRLCNGDMRKALNILQSTHMA---SQQITEEAVYLCTGNPLPKDIEQ 272
E + +T G A+V L GDMRK+LNILQ+++MA +I E VY C G P I
Sbjct: 181 EDVPITPAGKQAIVDLAEGDMRKSLNILQASYMAFCERGKIDETEVYQCVGAPQKSVIAD 240
Query: 273 ISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIE 332
I L+N+ ++++I ++K K LAL DIV +V + + + + V++ +++ L +E
Sbjct: 241 IMTHLMNDDITTAYRKILDIKTMKSLALQDIVHKVHQSIMEFDLKAKVKIFILSKLGQLE 300
Query: 333 YRLSFGCNDKLQLGSIISTFTQAR 356
RL+ G ++ +QLGS++S QAR
Sbjct: 301 KRLAAGSSENIQLGSLVSIMFQAR 324
>gi|30913228|sp|O74111.1|RFC3_ARXAD RecName: Full=Replication factor C subunit 3; Short=Replication
factor C3; AltName: Full=Activator 1 subunit 3
gi|3367626|emb|CAA07618.1| replication factor C subunit [Blastobotrys adeninivorans]
Length = 338
Score = 322 bits (825), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 159/318 (50%), Positives = 218/318 (68%), Gaps = 8/318 (2%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP +L +VA H ++ TI + E +LPHLL +GPPGTGKT+TI+AVAR++YG
Sbjct: 18 PWVEKYRPTTLDEVAGHEGVITTIKKFVEEGKLPHLLFHGPPGTGKTTTIIAVARQIYGK 77
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFAST-QSFSFGVKASVKLVLLDEADAMTKDAQFA 160
Y NMILELNASD+RGIDVVR QI+ FAST Q FS G KLV+LDEADAMT AQ A
Sbjct: 78 NYRNMILELNASDERGIDVVRDQIKTFASTRQIFSSG----FKLVILDEADAMTNAAQNA 133
Query: 161 LRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDV 220
LRR+IEKY+ +TRF ++ N +K+ PAL SRCTRFRF+PL+ + RL HVIE E +D+
Sbjct: 134 LRRIIEKYSAHTRFCILANYTHKLNPALLSRCTRFRFSPLKEDAIKHRLAHVIEQESVDL 193
Query: 221 TEGGLAALVRLCNGDMRKALNILQSTHM---ASQQITEEAVYLCTGNPLPKDIEQISYWL 277
+ +L+ L +GDMR+ALN+LQ+ + A +QI+EE VY C G+P P DI + +
Sbjct: 194 SPEAFQSLLHLSSGDMRRALNVLQACYASVDAGEQISEELVYDCVGSPRPADIRTVLQAV 253
Query: 278 LNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSF 337
L+ S+ + S +K KGLAL D++ + K+ + + R+ L++ L++IE+RLS
Sbjct: 254 LDGSWESALHTFSYIKQSKGLALADMLTAFAVEFQKLDLQNKTRIALLDGLSEIEWRLSS 313
Query: 338 GCNDKLQLGSIISTFTQA 355
G N+ +Q + I Q+
Sbjct: 314 GGNESIQTSATIGVIKQS 331
>gi|50543016|ref|XP_499674.1| YALI0A02068p [Yarrowia lipolytica]
gi|49645539|emb|CAG83597.1| YALI0A02068p [Yarrowia lipolytica CLIB122]
Length = 358
Score = 322 bits (824), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 162/335 (48%), Positives = 223/335 (66%), Gaps = 10/335 (2%)
Query: 26 GKNVIVSGTPPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGT 85
GK + V P PWVEKYRP +L DV H +V T+ +L + + PHLL YGPPGT
Sbjct: 14 GKEIAVDTIKPGKDHLPWVEKYRPDTLDDVTGHEGVVTTLKKLLANKKFPHLLFYGPPGT 73
Query: 86 GKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFAST-QSFSFG----VKA 140
GKTSTILAVAR++YG Y +M+LELNASDDRGIDVVR QI+ FAS+ Q F G ++
Sbjct: 74 GKTSTILAVAREIYGPSYKSMVLELNASDDRGIDVVRDQIKVFASSRQIFQRGGEENARS 133
Query: 141 SVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPL 200
+ KLV+LDEADAMT AQ ALRRVIE+YT +TRF ++ N +K+ PAL SRCTRFRF+PL
Sbjct: 134 NFKLVILDEADAMTNVAQNALRRVIEQYTTHTRFCILANYTHKLNPALLSRCTRFRFSPL 193
Query: 201 EPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQ-----ITE 255
+ +R+ VI+AE + + AAL+ L GDMR+ALN+LQ+ H + IT
Sbjct: 194 PEAAIDKRIMQVIDAEKVKIAPDAKAALLELSKGDMRRALNVLQACHTGLEHPGKDTITL 253
Query: 256 EAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIK 315
VYLC G+P P DI+ I +LN+ + ++ +S +K +GLALVDI+ +++ + +
Sbjct: 254 SQVYLCVGSPDPADIDTILTSILNDDWTTAYDTVSTLKRERGLALVDILEKLSAELMALN 313
Query: 316 MPSDVRVRLMNDLADIEYRLSFGCNDKLQLGSIIS 350
+ ++ L++ LADIEYRL+ G ++K+Q + I
Sbjct: 314 LKEKTKIALLSKLADIEYRLANGGSEKIQTSAAIG 348
>gi|412990439|emb|CCO19757.1| replication factor C small subunit [Bathycoccus prasinos]
Length = 341
Score = 322 bits (824), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 173/343 (50%), Positives = 236/343 (68%), Gaps = 10/343 (2%)
Query: 22 PKDNG---KNVIVSGTPPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLL 78
P + G KNVIVS + WVEKYRP+SL ++AAH DIV TI +LT + +LPHLL
Sbjct: 2 PPEKGHDTKNVIVSD-KVSMSNQMWVEKYRPKSLDEIAAHADIVATIRQLTHDKKLPHLL 60
Query: 79 LYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFAST-QSFSFG 137
LYGPPGTGKTS ILA+AR+LY + M LELNASD+RGIDVVR++IQ FAST ++ SFG
Sbjct: 61 LYGPPGTGKTSIILALARELYSTSFTQMALELNASDERGIDVVREEIQAFASTLRASSFG 120
Query: 138 VKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRF 197
K LV+LDE+D+MTKDAQFALRR+IE+YTK TRF LICN +KIIPALQSRCT+FR
Sbjct: 121 FK----LVILDESDSMTKDAQFALRRIIERYTKYTRFCLICNFPSKIIPALQSRCTKFRL 176
Query: 198 APLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQ-ITEE 256
L+ + +++ V AE L +TE G+ A+ R+ GDMRK+LNILQS H+AS+ I E+
Sbjct: 177 EALQFEDIRNKIQLVSSAENLKITEEGILAVCRVGCGDMRKSLNILQSAHLASKDVIDED 236
Query: 257 AVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKM 316
VY TG PLP ++ + LL F ++ + E K+ +GL L DIV + +V ++ +
Sbjct: 237 LVYAVTGKPLPVNMGNLCDSLLTLPFKEAVIVLVERKIIEGLTLSDIVEAMMAYVSQLHI 296
Query: 317 PSDVRVRLMNDLADIEYRLSFGCNDKLQLGSIISTFTQARSAI 359
S R + L++I+ ++ +++QL +I+S F++ +S I
Sbjct: 297 SSFFRTEFLRQLSEIDRCMTCCMGERIQLLTIVSIFSKLKSQI 339
>gi|146101518|ref|XP_001469135.1| putative replication factor C, subunit 3 [Leishmania infantum
JPCM5]
gi|398023497|ref|XP_003864910.1| replication factor C, subunit 3, putative [Leishmania donovani]
gi|134073504|emb|CAM72235.1| putative replication factor C, subunit 3 [Leishmania infantum
JPCM5]
gi|322503146|emb|CBZ38230.1| replication factor C, subunit 3, putative [Leishmania donovani]
Length = 364
Score = 322 bits (824), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 159/332 (47%), Positives = 218/332 (65%), Gaps = 14/332 (4%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP +L V AH DI+ T+ L +PHLLLYGPPGTGKT+TI A A LYG
Sbjct: 18 PWVEKYRPSTLESVVAHEDILSTLRHLMDSGNMPHLLLYGPPGTGKTTTIKACAYYLYGK 77
Query: 102 -QYHNMILELNASDDRGIDVVRQQIQDFASTQSF-------------SFGVKASVKLVLL 147
+ +LE+NASDDRGIDVVRQQ ++FAST S S G A KLV+L
Sbjct: 78 DRVRANVLEMNASDDRGIDVVRQQTREFASTSSIFSMMGSGSSTGGGSGGPAAKFKLVIL 137
Query: 148 DEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTE 207
DEAD M+ DAQ ALRRVIEKYT+N RF ++CN +NKIIPALQSRCTRFRFAP++ +
Sbjct: 138 DEADQMSHDAQAALRRVIEKYTRNVRFCILCNHINKIIPALQSRCTRFRFAPVKKSAMMP 197
Query: 208 RLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLP 267
RL+ V E EG+ T GLAA RL +GD+R+ LN +Q++ +++ ++TEE+VY TGNP P
Sbjct: 198 RLRFVAEQEGVKYTTDGLAAAFRLSHGDLRRCLNTMQASALSANEVTEESVYRVTGNPTP 257
Query: 268 KDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMND 327
D+ I +L+ FA S+ ++ E ++KG+++ D+ RE+ + + +P D + L+
Sbjct: 258 ADVTAIVSDMLSSDFATSWIKVEESVVQKGISIADLTREIHPVMMAMDLPQDCKCFLLMK 317
Query: 328 LADIEYRLSFGCNDKLQLGSIISTFTQARSAI 359
L+D+EY + G + LG ++ F + A+
Sbjct: 318 LSDLEYYAAGGARESAGLGGLLGAFQLVKEAV 349
>gi|344237035|gb|EGV93138.1| Replication factor C subunit 5 [Cricetulus griseus]
Length = 407
Score = 321 bits (823), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 163/300 (54%), Positives = 214/300 (71%), Gaps = 7/300 (2%)
Query: 65 IDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYG-AQYHNMILELNASDDRGIDVVRQ 123
I + SE+RLPHLLLYGPPGTGKTSTILA A++LY ++ +M+LE +D V +
Sbjct: 114 IQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKDKEFGSMVLEGRRNDL----VSSK 169
Query: 124 QIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNK 183
+I G KLV+LDEADAMT+DAQ ALRRVIEK+T+NTRF LICN ++K
Sbjct: 170 RINQDGPRDVGVLG--KGFKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSK 227
Query: 184 IIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNIL 243
IIPALQSRCTRFRF PL P + RL+HV++ E +D++E G+ AL+ L +GDMR+ALNIL
Sbjct: 228 IIPALQSRCTRFRFGPLTPELMVPRLEHVVQEENVDISEDGMKALITLSSGDMRRALNIL 287
Query: 244 QSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDI 303
QST+MA ++TEE VY CTG+PL DI I W+LN+ F +++ I E+K KGLAL DI
Sbjct: 288 QSTNMAFGKVTEETVYTCTGHPLKTDIANILDWMLNQDFTTAYRHIMELKTLKGLALHDI 347
Query: 304 VREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDKLQLGSIISTFTQARSAIVAAA 363
+ EV +FV ++ PS VR+ L+ +ADIEYRLS G ++K+QL S+I+ F R IV+ A
Sbjct: 348 LTEVHLFVHRVDFPSSVRIHLLTKMADIEYRLSVGTSEKIQLSSLIAAFQVTRDLIVSEA 407
>gi|50294179|ref|XP_449501.1| hypothetical protein [Candida glabrata CBS 138]
gi|49528815|emb|CAG62477.1| unnamed protein product [Candida glabrata]
Length = 331
Score = 320 bits (820), Expect = 6e-85, Method: Compositional matrix adjust.
Identities = 160/321 (49%), Positives = 220/321 (68%), Gaps = 14/321 (4%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRPQ+L DV R++V T+ + E +LPHLL YGPPGTGKTSTI+A+A+ +YG
Sbjct: 10 PWVEKYRPQTLDDVYGQREVVGTVKKFVQEGKLPHLLFYGPPGTGKTSTIVALAKDIYGK 69
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFAST-QSFSFGVKASVKLVLLDEADAMTKDAQFA 160
Y NM+LELNASDDRGIDVVR QI+DFAST Q FS G KL++LDEADAMT AQ A
Sbjct: 70 NYSNMVLELNASDDRGIDVVRNQIKDFASTRQIFSKG----FKLIILDEADAMTNAAQNA 125
Query: 161 LRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDV 220
LRR+IEKYTKNTRF ++ N +KI PAL SRCTRFRF PL V +R+ +V+ E L +
Sbjct: 126 LRRIIEKYTKNTRFCILANYSHKITPALLSRCTRFRFQPLPNDAVEKRMANVLVHEHLRI 185
Query: 221 TEGGLAALVRLCNGDMRKALNILQSTHMA----SQQITEEAVYLCTGNPLPKDIEQISYW 276
+ AL+ L NGDMR+ LN+LQ++ +IT+E +Y C G P P+DI+ I
Sbjct: 186 SPAAKEALLELSNGDMRRVLNVLQASKATLESPEDEITDEVIYECCGAPRPQDIQTILKS 245
Query: 277 LLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKM-PSDVRVRLMNDLADIEYRL 335
+L + ++ ++ ++ ++ GLAL+D++ + + + K+ + R+ L++ L DIEY +
Sbjct: 246 ILEDDWSTAYDTLTRIRSSNGLALIDLIESIVKILEEYKLKKEETRISLLSQLGDIEYAI 305
Query: 336 SFGCNDKLQ----LGSIISTF 352
S G NDK+Q +G+I S+F
Sbjct: 306 SKGGNDKIQSSAVIGAIKSSF 326
>gi|388583685|gb|EIM23986.1| P-loop containing nucleoside triphosphate hydrolase protein
[Wallemia sebi CBS 633.66]
Length = 335
Score = 320 bits (819), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 159/314 (50%), Positives = 218/314 (69%), Gaps = 7/314 (2%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP L DV +H +I+ TI++ + RLPHLL YGPPGTGKTSTILA+A+K+YG
Sbjct: 15 PWVEKYRPNELDDVVSHTEIIQTINQFIQKQRLPHLLFYGPPGTGKTSTILAIAKKIYGG 74
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQS-FSFGVKASVKLVLLDEADAMTKDAQFA 160
+ +LELNASDDRGIDVVR QI+ FA T++ FS G KL++LDEAD MT+ AQ A
Sbjct: 75 NWKRNVLELNASDDRGIDVVRDQIKSFAQTRTLFSDG----FKLIILDEADLMTQQAQGA 130
Query: 161 LRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDV 220
LRR+IE YT TRF +ICN VNKI PA+ SRCTRFRF+PL H+ +RL VIE E + +
Sbjct: 131 LRRIIEHYTPTTRFCIICNYVNKITPAIMSRCTRFRFSPLPYAHLDKRLVEVIENEAVQI 190
Query: 221 TEGGLAALVRLCNGDMRKALNILQSTHMAS--QQITEEAVYLCTGNPLPKDIEQISYWLL 278
+ AL+ L GDMR+ALNILQ+ H A ++I+ + VY T P P+ IE I LL
Sbjct: 191 DDDAKKALLNLTKGDMRRALNILQACHTACMPERISIKDVYNVTAAPQPEAIEYIVNTLL 250
Query: 279 NESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFG 338
+ + + +I ++K + GLAL DI+ V ++ I+ P+ +V ++ LA++E+RLS G
Sbjct: 251 KDEISTCYSKIHQVKRQNGLALQDILTGVYDYIQTIEFPTATKVAILELLAEVEHRLSKG 310
Query: 339 CNDKLQLGSIISTF 352
++ +QL ++I++F
Sbjct: 311 SSETIQLSALIASF 324
>gi|255710491|ref|XP_002551529.1| KLTH0A01540p [Lachancea thermotolerans]
gi|238932906|emb|CAR21087.1| KLTH0A01540p [Lachancea thermotolerans CBS 6340]
Length = 328
Score = 319 bits (818), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 157/314 (50%), Positives = 216/314 (68%), Gaps = 9/314 (2%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PW+EKYRPQ+L DV R+IV T+ + E RLPHLL YGPPGTGKTS I+A++R++YG
Sbjct: 9 PWIEKYRPQTLDDVYGQREIVGTVRKFVKEGRLPHLLFYGPPGTGKTSMIVALSREIYGT 68
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFAST-QSFSFGVKASVKLVLLDEADAMTKDAQFA 160
Y NM+LELNASDDRGIDVVR QI++FAST Q FS G KL++LDEADAMT AQ A
Sbjct: 69 NYRNMVLELNASDDRGIDVVRNQIKEFASTRQIFSKG----FKLIILDEADAMTNAAQNA 124
Query: 161 LRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDV 220
LRR+IEKYTKNTRF ++ N +K+ PAL SRCTRFRF PL + +R+ V+ E L +
Sbjct: 125 LRRIIEKYTKNTRFCILANYAHKLTPALLSRCTRFRFQPLPTDAIEKRVNKVLILENLKL 184
Query: 221 TEGGLAALVRLCNGDMRKALNILQSTHMA----SQQITEEAVYLCTGNPLPKDIEQISYW 276
+ AL+RL GDMR+ALN+LQ++ ++TE+ +Y C G P P+DIE
Sbjct: 185 SREAFTALLRLSKGDMRRALNVLQASKATLDDPDAEVTEDTIYECIGAPHPQDIETALES 244
Query: 277 LLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLS 336
+L + ++ +F +++++ KGLAL+D+V + + ++ + RV L+ L+DIEY +S
Sbjct: 245 MLKDDWSTAFFTVNKIRTLKGLALIDLVEGIVETLEGYELKPETRVELLCKLSDIEYAMS 304
Query: 337 FGCNDKLQLGSIIS 350
G NDK+Q ++I
Sbjct: 305 KGGNDKVQSSAVIG 318
>gi|167538762|ref|XP_001751040.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163770449|gb|EDQ84145.1| predicted protein [Monosiga brevicollis MX1]
Length = 331
Score = 317 bits (811), Expect = 7e-84, Method: Compositional matrix adjust.
Identities = 163/325 (50%), Positives = 211/325 (64%), Gaps = 35/325 (10%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP SL + +H +I++TI R +E+RLPHLLLYGPPGTGKTSTI A A++LYG
Sbjct: 23 PWVEKYRPSSLDQLISHTEIINTIQRFINEDRLPHLLLYGPPGTGKTSTIKACAKQLYGK 82
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFAL 161
Y M+LE+ V + KLV+LDEADAM+ +AQ AL
Sbjct: 83 GYKRMVLEVRL-------------------------VTSGFKLVILDEADAMSNEAQAAL 117
Query: 162 RRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVT 221
RRVIE+YTK+TRF LICN V+KI PA+QSRCTRFRFAPL + +++ VI+AE L VT
Sbjct: 118 RRVIEQYTKHTRFCLICNYVSKISPAVQSRCTRFRFAPLSEDELKSQVQRVIKAENLTVT 177
Query: 222 EGGLAALVRLCNGDMRKALNILQ----------STHMASQQITEEAVYLCTGNPLPKDIE 271
G+ AL RL +GDMRKALNILQ ST +A I AVY CT P P DI+
Sbjct: 178 PEGIDALTRLADGDMRKALNILQVSVFGDLFATSTALAFGDIDARAVYTCTATPQPDDIQ 237
Query: 272 QISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADI 331
I W+L + A+++K ISE+K +GLAL DI++EV F+ I P+D ++ L+ ADI
Sbjct: 238 SIVSWMLEKPVAEAYKLISEVKTEQGLALQDILKEVHRFMHNIDFPTDCKILLLERFADI 297
Query: 332 EYRLSFGCNDKLQLGSIISTFTQAR 356
E+RL+ G + LQL +I+TF + R
Sbjct: 298 EHRLADGATESLQLSDMIATFQRVR 322
>gi|50309079|ref|XP_454545.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49643680|emb|CAG99632.1| KLLA0E13201p [Kluyveromyces lactis]
Length = 329
Score = 317 bits (811), Expect = 7e-84, Method: Compositional matrix adjust.
Identities = 152/320 (47%), Positives = 221/320 (69%), Gaps = 10/320 (3%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PW+EKYRP++L DV +++V+T+ + E RLPHLL YGPPGTGKTSTI+A+AR++YG+
Sbjct: 9 PWIEKYRPETLDDVYGQQNVVNTVRKFLHEGRLPHLLFYGPPGTGKTSTIVALAREIYGS 68
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFAST-QSFSFGVKASVKLVLLDEADAMTKDAQFA 160
Y NM+LELNASDDRGIDVVR QI++FAST Q FS G KL++LDEADAMT AQ A
Sbjct: 69 NYRNMVLELNASDDRGIDVVRNQIKEFASTRQIFSKG----FKLIILDEADAMTNAAQNA 124
Query: 161 LRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDV 220
LRR+IE+YTKNTRF ++ N +K+ PAL SRCTRFRF PL + R+ +V+ E L +
Sbjct: 125 LRRIIERYTKNTRFCILANYAHKLTPALLSRCTRFRFQPLSEQAIERRIANVLVKEHLKL 184
Query: 221 TEGGLAALVRLCNGDMRKALNILQSTHMA-----SQQITEEAVYLCTGNPLPKDIEQISY 275
AAL+RL +GDMR+ALN+LQ+ ++++TE+ +Y C G P P+D+E +
Sbjct: 185 DPQAHAALLRLSSGDMRRALNVLQAARATLDNPDTEEVTEDLIYECIGAPHPRDLETMLE 244
Query: 276 WLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRL 335
+L + + + ++++++ KGLAL+D++ + + + ++ R+ L++ L+DIEY +
Sbjct: 245 SILKDDWTTTTYTVNKIRITKGLALIDMIEGIAGLLEQYELKPQTRIELLSRLSDIEYSI 304
Query: 336 SFGCNDKLQLGSIISTFTQA 355
S G D +Q + I T Q
Sbjct: 305 SRGGTDSIQTSATIGTIKQC 324
>gi|353231592|emb|CCD78010.1| putative replication factor C / DNA polymerase III gamma-tau
subunit [Schistosoma mansoni]
Length = 325
Score = 317 bits (811), Expect = 8e-84, Method: Compositional matrix adjust.
Identities = 150/295 (50%), Positives = 215/295 (72%), Gaps = 3/295 (1%)
Query: 65 IDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQ 124
+ R +RLPHLL YGPPGTGKTSTILA A++LY Q+ +M+LELNASDDRGIDVVR+Q
Sbjct: 29 LKRFIDNDRLPHLLFYGPPGTGKTSTILAAAKRLYSRQFSSMVLELNASDDRGIDVVREQ 88
Query: 125 IQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKI 184
+ FAST++ G KLV+LDEAD+MTKDAQ ALRR+IEK+T+NTRF LICN ++KI
Sbjct: 89 VLSFASTKTLFAG---KFKLVILDEADSMTKDAQNALRRIIEKFTENTRFCLICNYLSKI 145
Query: 185 IPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQ 244
IPA+QSRCT+FRFAPL V+ L+ + EG+D+T+ G+ A+ + +GDMRK++N+LQ
Sbjct: 146 IPAIQSRCTKFRFAPLAFNDVSTCLRKIASNEGVDLTDDGVKAIYQFASGDMRKSINLLQ 205
Query: 245 STHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIV 304
ST+M+S+ + +VY C P P ++ + +LNE + ++ I+ +K KG+AL DI+
Sbjct: 206 STYMSSKTVDGPSVYACVAYPSPAEVRSLLDHVLNEPISTAYHNITAVKNLKGIALQDII 265
Query: 305 REVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDKLQLGSIISTFTQARSAI 359
E+ + +I +P +R L+ L+DIE R+S G +++LQLG+ +S FT+A+ A+
Sbjct: 266 TEIHPLIMRIDLPDKIRCDLLIALSDIENRMSQGASERLQLGAFVSAFTRAKIAL 320
>gi|121719320|ref|XP_001276359.1| DNA replication factor C subunit Rfc3, putative [Aspergillus
clavatus NRRL 1]
gi|119404557|gb|EAW14933.1| DNA replication factor C subunit Rfc3, putative [Aspergillus
clavatus NRRL 1]
Length = 395
Score = 316 bits (810), Expect = 9e-84, Method: Compositional matrix adjust.
Identities = 162/335 (48%), Positives = 219/335 (65%), Gaps = 27/335 (8%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYG- 100
PWVEKYRP +L DV+ H+DI+ TI++ NRLPHLLLYGPPGTGKTSTILA+AR++YG
Sbjct: 46 PWVEKYRPNTLDDVSGHQDILTTINKFVEANRLPHLLLYGPPGTGKTSTILALARRIYGT 105
Query: 101 AQYHNMILELNASDDRGIDVVRQQIQDFAST-QSFSFGVKASV-------KLVLLDEADA 152
+ M+LELNASDDRGIDVVR+QI+ FAST Q FS AS KL++LDEADA
Sbjct: 106 SNMRQMVLELNASDDRGIDVVREQIKTFASTKQIFSMAPSASTGSSLASYKLIILDEADA 165
Query: 153 MTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHV 212
MT AQ ALRR++EKYT NTRF +I N +K+ PAL SRCTRFRF+PL+ + + HV
Sbjct: 166 MTSTAQMALRRIMEKYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKEQDIRSLVDHV 225
Query: 213 IEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMAS-----------------QQITE 255
IE E + + +++LV+L GDMR+ALN+LQ+ H +S + IT
Sbjct: 226 IEKEQVQIQPEAVSSLVKLSKGDMRRALNVLQACHASSKPLPMKNATKDEPPAEVETITN 285
Query: 256 EAVYLCTGNPLPKDIEQISYWLLNESFADS-FKRISEMKMRKGLALVDIVREVTMFVFKI 314
+Y C P P DI++I LL+ S S ++ +K KGLAL DI+ + + ++
Sbjct: 286 ATIYDCIAAPHPSDIQEIMTTLLSTSDVTSCLNTLTTIKANKGLALADILSALAEQLQEL 345
Query: 315 KMPSDVRVRLMNDLADIEYRLSFGCNDKLQLGSII 349
++P+ R+ + LADIEYRL+ G ++ +Q G +
Sbjct: 346 EVPAQTRITWLEGLADIEYRLAAGGSETMQTGGTV 380
>gi|315049065|ref|XP_003173907.1| replication factor C protein subunit 3 [Arthroderma gypseum CBS
118893]
gi|311341874|gb|EFR01077.1| replication factor C protein subunit 3 [Arthroderma gypseum CBS
118893]
Length = 397
Score = 316 bits (810), Expect = 9e-84, Method: Compositional matrix adjust.
Identities = 164/336 (48%), Positives = 220/336 (65%), Gaps = 25/336 (7%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP +L DV+ H+DI+ TI+R NRLPHLLLYGPPGTGKTSTILA+AR++YG+
Sbjct: 46 PWVEKYRPDTLDDVSGHQDIIATINRFVESNRLPHLLLYGPPGTGKTSTILALARRIYGS 105
Query: 102 Q-YHNMILELNASDDRGIDVVRQQIQDFAST-QSFSFGVKA-----SVKLVLLDEADAMT 154
+ M+LELNASDDRGIDVVR+QI+ FAST Q FS + + KL++LDEADAMT
Sbjct: 106 KNMRQMVLELNASDDRGIDVVREQIKTFASTKQIFSTAPSSGSGLGAFKLIILDEADAMT 165
Query: 155 KDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIE 214
AQ ALRR++EKYT NTRF +I N +K+ PAL SRCTRFRF+PL+ + + VIE
Sbjct: 166 SAAQMALRRIMEKYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKEQDIKRLVDTVIE 225
Query: 215 AEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMAS-----------------QQITEEA 257
E + + + +LV+L GDMR+ALN+LQ+ H +S + ITEE
Sbjct: 226 KEQVQIQPDAIDSLVKLSKGDMRRALNVLQACHASSMPLPSKKGDTSEQPQDRETITEET 285
Query: 258 VYLCTGNPLPKDIEQISYWLLNESFADS-FKRISEMKMRKGLALVDIVREVTMFVFKIKM 316
+Y C P P DI+ I LL+ S S + +K KGLAL DI+ ++ + +++
Sbjct: 286 IYTCIAAPHPADIKMILETLLSTSDVTSCLNTVQTLKSNKGLALADIISALSTELQSLEV 345
Query: 317 PSDVRVRLMNDLADIEYRLSFGCNDKLQLGSIISTF 352
P+ VRV + LAD+E+RLS G ++ +Q G +I
Sbjct: 346 PAQVRVSWIEGLADVEWRLSGGGSESIQTGGMIGVI 381
>gi|256052294|ref|XP_002569709.1| replication factor C / DNA polymerase III gamma-tau subunit
[Schistosoma mansoni]
Length = 337
Score = 316 bits (809), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 150/295 (50%), Positives = 215/295 (72%), Gaps = 3/295 (1%)
Query: 65 IDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQ 124
+ R +RLPHLL YGPPGTGKTSTILA A++LY Q+ +M+LELNASDDRGIDVVR+Q
Sbjct: 41 LKRFIDNDRLPHLLFYGPPGTGKTSTILAAAKRLYSRQFSSMVLELNASDDRGIDVVREQ 100
Query: 125 IQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKI 184
+ FAST++ G KLV+LDEAD+MTKDAQ ALRR+IEK+T+NTRF LICN ++KI
Sbjct: 101 VLSFASTKTLFAG---KFKLVILDEADSMTKDAQNALRRIIEKFTENTRFCLICNYLSKI 157
Query: 185 IPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQ 244
IPA+QSRCT+FRFAPL V+ L+ + EG+D+T+ G+ A+ + +GDMRK++N+LQ
Sbjct: 158 IPAIQSRCTKFRFAPLAFNDVSTCLRKIASNEGVDLTDDGVKAIYQFASGDMRKSINLLQ 217
Query: 245 STHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIV 304
ST+M+S+ + +VY C P P ++ + +LNE + ++ I+ +K KG+AL DI+
Sbjct: 218 STYMSSKTVDGPSVYACVAYPSPAEVRSLLDHVLNEPISTAYHNITAVKNLKGIALQDII 277
Query: 305 REVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDKLQLGSIISTFTQARSAI 359
E+ + +I +P +R L+ L+DIE R+S G +++LQLG+ +S FT+A+ A+
Sbjct: 278 TEIHPLIMRIDLPDKIRCDLLIALSDIENRMSQGASERLQLGAFVSAFTRAKIAL 332
>gi|327301329|ref|XP_003235357.1| DNA replication factor C subunit [Trichophyton rubrum CBS 118892]
gi|326462709|gb|EGD88162.1| DNA replication factor C subunit [Trichophyton rubrum CBS 118892]
Length = 397
Score = 315 bits (808), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 165/336 (49%), Positives = 220/336 (65%), Gaps = 25/336 (7%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP +L DV+ H+DI+ TI+R NRLPHLLLYGPPGTGKTSTILA+AR++YG+
Sbjct: 46 PWVEKYRPDTLDDVSGHQDIIATINRFVDSNRLPHLLLYGPPGTGKTSTILALARRIYGS 105
Query: 102 Q-YHNMILELNASDDRGIDVVRQQIQDFAST-QSFSFGVKA-----SVKLVLLDEADAMT 154
+ M+LELNASDDRGIDVVR+QI+ FAST Q FS + + KL++LDEADAMT
Sbjct: 106 KNMRQMVLELNASDDRGIDVVREQIKTFASTKQIFSTAPSSGSGLGAFKLIILDEADAMT 165
Query: 155 KDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIE 214
AQ ALRR++EKYT NTRF +I N +K+ PAL SRCTRFRF+PL+ + + VIE
Sbjct: 166 SAAQMALRRIMEKYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKEKDIRRLVDTVIE 225
Query: 215 AEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMAS-----------------QQITEEA 257
E + + + +LV+L GDMR+ALN+LQ+ H +S + ITEE
Sbjct: 226 KEEVQIQPDAIDSLVKLSKGDMRRALNVLQACHASSMPLPSKKGDANEQQRERETITEET 285
Query: 258 VYLCTGNPLPKDIEQISYWLLNESFADS-FKRISEMKMRKGLALVDIVREVTMFVFKIKM 316
+Y C P P DI+ I LL+ S S + +K KGLAL DI+ ++ + +++
Sbjct: 286 IYTCIAAPHPADIKIILETLLSTSDVTSCLNTVQTLKANKGLALADIISALSTELQSLEV 345
Query: 317 PSDVRVRLMNDLADIEYRLSFGCNDKLQLGSIISTF 352
P+ VRV + LAD+E+RLS G N+ +Q G +I
Sbjct: 346 PAQVRVSWIEGLADVEWRLSGGGNEVIQTGGMIGVI 381
>gi|308800034|ref|XP_003074798.1| rfc5 replication factor C subunit 5 (36kDa), probable (IC)
[Ostreococcus tauri]
gi|119358795|emb|CAL52056.2| rfc5 replication factor C subunit 5 (36kDa), probable (IC)
[Ostreococcus tauri]
Length = 341
Score = 315 bits (808), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 151/333 (45%), Positives = 222/333 (66%), Gaps = 5/333 (1%)
Query: 31 VSGTPPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTST 90
VS K PW EKYRP +L++V AH I+D I + + RLPHLL +GPPGTGKTST
Sbjct: 5 VSAEESTEKHLPWTEKYRPLNLSEVVAHETIIDVIRKFAANGRLPHLLFHGPPGTGKTST 64
Query: 91 ILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFAST-QSFSFGVKASVKLVLLDE 149
+LA+ R+LY + + NM+LELNASD RGI++VR +IQ FAST + FS ++ KLV++DE
Sbjct: 65 VLALTRELYESNHSNMVLELNASDSRGINIVRDEIQSFASTARPFS----SAFKLVIMDE 120
Query: 150 ADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERL 209
D++TKDAQFALRR++EKY ++TRF LICN +KIIPA+QSRCT+FRFAP+ + +RL
Sbjct: 121 CDSLTKDAQFALRRIMEKYAQHTRFCLICNYASKIIPAIQSRCTKFRFAPVPAEAMLQRL 180
Query: 210 KHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKD 269
+HV+ +E + ++ L + RL GDMR++LN+LQS H+AS +IT ++ TG +
Sbjct: 181 RHVVCSERVQISGASLQTIQRLGEGDMRRSLNVLQSLHLASTKITSATIHATTGLLDRCE 240
Query: 270 IEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLA 329
+ + L + + +K+ K AL D+++E++ +F + M VR +L+ LA
Sbjct: 241 VLEFLQVLFEKPMKSILNHLYRLKLEKSFALTDLIKEMSETLFSLHMSVQVRSQLLKGLA 300
Query: 330 DIEYRLSFGCNDKLQLGSIISTFTQARSAIVAA 362
D+E+ LSF ++K+Q S+IS F R + +
Sbjct: 301 DVEHALSFTSSEKIQTLSLISIFLHVRRTLTTS 333
>gi|320581211|gb|EFW95432.1| DNA replication factor C [Ogataea parapolymorpha DL-1]
Length = 325
Score = 315 bits (806), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 154/318 (48%), Positives = 217/318 (68%), Gaps = 8/318 (2%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP L DV +D+V T+ + E R+PHLL YGPPGTGKTSTI+A+AR+LYG
Sbjct: 7 PWVEKYRPAKLDDVYGQKDVVQTVRKFAKEGRIPHLLFYGPPGTGKTSTIIALARELYGK 66
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFAST-QSFSFGVKASVKLVLLDEADAMTKDAQFA 160
Y NM+LELNASDDRGIDVVR QI++FAST Q F+ G KL++LDEADAM+ AQ A
Sbjct: 67 NYRNMVLELNASDDRGIDVVRDQIKNFASTRQIFNSG----FKLIILDEADAMSNAAQNA 122
Query: 161 LRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDV 220
LRRVIEKYTKNTRF ++ N +K+ PAL SRCTRFRF+PL + +R+ +VI+AEGL +
Sbjct: 123 LRRVIEKYTKNTRFCILANYSHKLNPALLSRCTRFRFSPLADSALQDRVDYVIKAEGLKI 182
Query: 221 TEGGLAALVRLCNGDMRKALNILQSTHMA---SQQITEEAVYLCTGNPLPKDIEQISYWL 277
+L+ L GDMR+ALN+LQ+ A ++IT++ VY C G P P+ + + +
Sbjct: 183 ASDARQSLLELSEGDMRRALNVLQACATAVESGEEITQDMVYECVGAPRPQSVMTVLDAI 242
Query: 278 LNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSF 337
++ + D++ +++++ +GLALVD++ + K ++ R+ ++ L DIEY +S
Sbjct: 243 MSNDWTDAYATMTKIRKTEGLALVDLMSGFVSVLDKYELKPRTRMAVLQGLGDIEYSISK 302
Query: 338 GCNDKLQLGSIISTFTQA 355
G +DK+Q ++I A
Sbjct: 303 GGSDKIQCTAVIGVIKNA 320
>gi|332250714|ref|XP_003274497.1| PREDICTED: replication factor C subunit 5 isoform 4 [Nomascus
leucogenys]
gi|67969441|dbj|BAE01071.1| unnamed protein product [Macaca fascicularis]
Length = 255
Score = 315 bits (806), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 153/258 (59%), Positives = 195/258 (75%), Gaps = 3/258 (1%)
Query: 106 MILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVI 165
M+LELNASDDRGID+VR I FAST++ K KLV+LDEADAMT+DAQ ALRRVI
Sbjct: 1 MVLELNASDDRGIDIVRGPILSFASTRTI---FKKGFKLVILDEADAMTQDAQNALRRVI 57
Query: 166 EKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGL 225
EK+T+NTRF LICN ++KIIPALQSRCTRFRF PL P + RL+HV+E E +D++E G+
Sbjct: 58 EKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVDISEDGM 117
Query: 226 AALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESFADS 285
ALV L +GDMR+ALNILQST+MA ++TEE VY CTG+PL DI I W+LN+ F +
Sbjct: 118 KALVTLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKSDIANILDWMLNQDFTTA 177
Query: 286 FKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDKLQL 345
++ I+E+K KGLAL DI+ E+ +FV ++ PS VR+ L+ +ADIEYRLS G N+K+QL
Sbjct: 178 YRNITELKTLKGLALHDILTEIHLFVHRVDFPSSVRIHLLTKMADIEYRLSVGTNEKIQL 237
Query: 346 GSIISTFTQARSAIVAAA 363
S+I+ F R IVA A
Sbjct: 238 SSLIAAFQVTRDLIVAEA 255
>gi|344231516|gb|EGV63398.1| hypothetical protein CANTEDRAFT_98513 [Candida tenuis ATCC 10573]
Length = 331
Score = 314 bits (805), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 155/319 (48%), Positives = 216/319 (67%), Gaps = 9/319 (2%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP++L +V +IVDT+ + E +LPHLL YGPPGTGKTSTI+A+AR++YG
Sbjct: 9 PWVEKYRPETLDEVYGQSEIVDTVRKFVQEGKLPHLLFYGPPGTGKTSTIIALAREIYGP 68
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFAST-QSFSFGVKASVKLVLLDEADAMTKDAQFA 160
+Y NM+LELNASDDRGIDVVR QI+DFAST Q FS G KL++LDEADAMT AQ A
Sbjct: 69 KYKNMVLELNASDDRGIDVVRNQIKDFASTMQIFSKG----FKLIILDEADAMTSVAQNA 124
Query: 161 LRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDV 220
LRR+IEKYTKNTRF ++ N +K+ PAL SRCTRFRF P+ + ERLK+V+ E + +
Sbjct: 125 LRRIIEKYTKNTRFCILANYSHKLNPALVSRCTRFRFQPIHTDAIRERLKNVVIKEKITI 184
Query: 221 TEGGLAALVRLCNGDMRKALNILQSTHMA----SQQITEEAVYLCTGNPLPKDIEQISYW 276
+ +L+ L GDMR+ALN+LQS + +I EE +Y C G P PKD+E +
Sbjct: 185 KPDAIESLLTLSQGDMRRALNVLQSCKASLDNPDDEIDEEMIYNCIGAPQPKDVETVLDS 244
Query: 277 LLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLS 336
+L + + ++ + + K KGLAL+D++ + K ++ +++++ L+++EY +S
Sbjct: 245 ILKDDWTTAYLTMDKFKRVKGLALIDLLEGFVGILNKYELDKQTKIKILKGLSEVEYGIS 304
Query: 337 FGCNDKLQLGSIISTFTQA 355
G NDK+ +II A
Sbjct: 305 KGGNDKINSSAIIGVIKDA 323
>gi|440638884|gb|ELR08803.1| replication factor C subunit 3/5 [Geomyces destructans 20631-21]
Length = 393
Score = 314 bits (805), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 164/342 (47%), Positives = 217/342 (63%), Gaps = 28/342 (8%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP +L DV+ H+DI+ TI+R NRLPHLLLYGPPGTGKTST+LA+AR++YG
Sbjct: 47 PWVEKYRPDTLEDVSGHQDIIATINRFVETNRLPHLLLYGPPGTGKTSTVLALARRIYGV 106
Query: 102 Q-YHNMILELNASDDRGIDVVRQQIQDFAST-QSFSFGVK-------ASVKLVLLDEADA 152
+ M+LELNASDDRGIDVVR+QI+ FAST Q FS A+ KL++LDEADA
Sbjct: 107 KNMRQMVLELNASDDRGIDVVREQIKTFASTRQIFSSAPSEASGKSMATYKLIILDEADA 166
Query: 153 MTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHV 212
MT AQ ALRR++EKYT NTRF +I N +K+ PAL SRCTRFRF+PL+ + + V
Sbjct: 167 MTSTAQMALRRIMEKYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKERDIRVLVDKV 226
Query: 213 IEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMAS------------------QQIT 254
IE E +++T AL +L GDMR+ALN+LQ+ H +S +IT
Sbjct: 227 IEEETVNITREATEALTKLSKGDMRRALNVLQACHASSTPLHIKGQPIPKESEIIRNKIT 286
Query: 255 EEAVYLCTGNPLPKDIEQISYWLLNESFADS-FKRISEMKMRKGLALVDIVREVTMFVFK 313
+Y C +P P DI I LL S S I+ +K KGLAL DI+ + + K
Sbjct: 287 TTTIYECIASPEPADISLIVDTLLKTSDVSSCLSLINTLKANKGLALADIIASIAEELTK 346
Query: 314 IKMPSDVRVRLMNDLADIEYRLSFGCNDKLQLGSIISTFTQA 355
++ P+ + M+ LA++EYRLS G N+ +Q G+++ Q
Sbjct: 347 LETPAQTMITWMDGLAEVEYRLSGGGNEVVQTGAVVGAVRQG 388
>gi|344301880|gb|EGW32185.1| DNA replication factor C [Spathaspora passalidarum NRRL Y-27907]
Length = 323
Score = 314 bits (804), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 154/315 (48%), Positives = 214/315 (67%), Gaps = 2/315 (0%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PW+EKYRP+SL D+ ++I+ T+ + +LPHLL YGPPGTGKTSTI+AVAR++YG
Sbjct: 6 PWIEKYRPESLDDIYGQQEIITTVHKFIQTGKLPHLLFYGPPGTGKTSTIIAVAREIYGK 65
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFAL 161
Y NM+LELNASDDRGIDVVR QI++FAST+ F S KL++LDEADAMT AQ +L
Sbjct: 66 NYKNMVLELNASDDRGIDVVRNQIKNFASTRQI-FNQGNSFKLIILDEADAMTNAAQNSL 124
Query: 162 RRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVT 221
RR+IEK+TKN RF ++ N +K+ PAL SRCTRFRF P++ + ER+K VI E +D+
Sbjct: 125 RRIIEKFTKNCRFCILANYSHKLNPALISRCTRFRFHPIDTEAIRERIKVVITKEQVDID 184
Query: 222 EGGLAALVRLCNGDMRKALNILQSTHMASQ-QITEEAVYLCTGNPLPKDIEQISYWLLNE 280
+ ALV+L GDMR+ALN+LQ+ A+ I + +Y C G P P+DIE + +L +
Sbjct: 185 AKAVDALVQLSKGDMRRALNVLQACKAATAGSIDLDMIYECIGAPHPQDIETVLDSILKD 244
Query: 281 SFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCN 340
+ ++ I++ K KGLAL+D++ + K+ + RV ++ L+DIEY +S G N
Sbjct: 245 DWTTAYITINKFKTTKGLALIDLIAGFVDILNNYKLNNKTRVGILKGLSDIEYGISKGGN 304
Query: 341 DKLQLGSIISTFTQA 355
DK+Q +II A
Sbjct: 305 DKIQSSAIIGVIKSA 319
>gi|194306569|ref|NP_001123584.1| replication factor C subunit 5 isoform 3 [Homo sapiens]
Length = 255
Score = 314 bits (804), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 152/258 (58%), Positives = 195/258 (75%), Gaps = 3/258 (1%)
Query: 106 MILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVI 165
M+LELNASDDRGID++R I FAST++ K KLV+LDEADAMT+DAQ ALRRVI
Sbjct: 1 MVLELNASDDRGIDIIRGPILSFASTRTI---FKKGFKLVILDEADAMTQDAQNALRRVI 57
Query: 166 EKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGL 225
EK+T+NTRF LICN ++KIIPALQSRCTRFRF PL P + RL+HV+E E +D++E G+
Sbjct: 58 EKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVDISEDGM 117
Query: 226 AALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESFADS 285
ALV L +GDMR+ALNILQST+MA ++TEE VY CTG+PL DI I W+LN+ F +
Sbjct: 118 KALVTLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKSDIANILDWMLNQDFTTA 177
Query: 286 FKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDKLQL 345
++ I+E+K KGLAL DI+ E+ +FV ++ PS VR+ L+ +ADIEYRLS G N+K+QL
Sbjct: 178 YRNITELKTLKGLALHDILTEIHLFVHRVDFPSSVRIHLLTKMADIEYRLSVGTNEKIQL 237
Query: 346 GSIISTFTQARSAIVAAA 363
S+I+ F R IVA A
Sbjct: 238 SSLIAAFQVTRDLIVAEA 255
>gi|444317044|ref|XP_004179179.1| hypothetical protein TBLA_0B08450 [Tetrapisispora blattae CBS 6284]
gi|387512219|emb|CCH59660.1| hypothetical protein TBLA_0B08450 [Tetrapisispora blattae CBS 6284]
Length = 333
Score = 314 bits (804), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 159/332 (47%), Positives = 222/332 (66%), Gaps = 14/332 (4%)
Query: 31 VSGTPPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTST 90
+SG ++ PWVEKYRP L +V ++V T+ R SE +LPHLL YGPPGTGKTST
Sbjct: 1 MSGNNRNVDNLPWVEKYRPNKLDEVYGQNEVVSTVRRFVSEGKLPHLLFYGPPGTGKTST 60
Query: 91 ILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFAST-QSFSFGVKASVKLVLLDE 149
I+A+AR++YG Y NM+LELNASDDRGIDVVR QI++FAST Q FS G KL++LDE
Sbjct: 61 IVALAREIYGNNYSNMVLELNASDDRGIDVVRNQIKEFASTRQIFSKG----FKLIILDE 116
Query: 150 ADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERL 209
ADAMT AQ ALRR+IEKYTKNTRF ++ N +K+ PAL SRCTRFRF PL + +R+
Sbjct: 117 ADAMTNAAQNALRRIIEKYTKNTRFCILANYAHKLTPALLSRCTRFRFQPLPIESMRQRI 176
Query: 210 KHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMA----SQQITEEAVYLCTGNP 265
+VI E + ++E L A ++L GDMRK LN++Q+ +I EE VY C G P
Sbjct: 177 DNVIVKEKVKISEDALNATLKLSKGDMRKVLNVIQACQAGQNSNENEIDEELVYECIGTP 236
Query: 266 LPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPS-DVRVRL 324
P DI+ I ++NE + ++ + +K+ +GLALVD++ + + ++ + + R+ +
Sbjct: 237 KPNDIKMILNSIMNEDWNTAYFTMERIKVTQGLALVDLIEGIVEVLEGYELKNEETRISI 296
Query: 325 MNDLADIEYRLSFGCNDKLQ----LGSIISTF 352
++ L DIEY +S G N+++Q +G I S+F
Sbjct: 297 LSRLGDIEYSISHGGNERVQSSAVIGVIKSSF 328
>gi|158255650|dbj|BAF83796.1| unnamed protein product [Homo sapiens]
Length = 255
Score = 313 bits (803), Expect = 6e-83, Method: Compositional matrix adjust.
Identities = 152/258 (58%), Positives = 195/258 (75%), Gaps = 3/258 (1%)
Query: 106 MILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVI 165
M+LELNASDDRGID++R I FAST++ K KLV+LDEADAMT+DAQ ALRRVI
Sbjct: 1 MVLELNASDDRGIDIIRGPILSFASTRTI---FKKGFKLVILDEADAMTQDAQNALRRVI 57
Query: 166 EKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGL 225
EK+T+NTRF LICN ++KIIPALQSRCTRFRF PL P + RL+HV+E E +D++E G+
Sbjct: 58 EKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVDISEDGM 117
Query: 226 AALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESFADS 285
ALV L +GDMR+ALNILQST+MA ++TEE VY CTG+PL DI I W+LN+ F +
Sbjct: 118 KALVTLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKSDIANILDWMLNQDFTTA 177
Query: 286 FKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDKLQL 345
++ I+E+K KGLAL DI+ E+ +FV ++ PS VR+ L+ +ADIEYRLS G N+K+QL
Sbjct: 178 YRNITELKTLKGLALHDILTEIHLFVHRVDSPSSVRIHLLTKMADIEYRLSVGTNEKIQL 237
Query: 346 GSIISTFTQARSAIVAAA 363
S+I+ F R IVA A
Sbjct: 238 SSLIAAFQVTRDLIVAEA 255
>gi|330922359|ref|XP_003299806.1| hypothetical protein PTT_10878 [Pyrenophora teres f. teres 0-1]
gi|311326367|gb|EFQ92093.1| hypothetical protein PTT_10878 [Pyrenophora teres f. teres 0-1]
Length = 393
Score = 313 bits (801), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 164/336 (48%), Positives = 220/336 (65%), Gaps = 27/336 (8%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP SL DV H+DI+ TI++ NRLPHLLLYGPPGTGKTST+LA+AR++YG
Sbjct: 44 PWVEKYRPNSLDDVEGHKDIIATINKFVDSNRLPHLLLYGPPGTGKTSTVLALARRIYGN 103
Query: 102 Q-YHNMILELNASDDRGIDVVRQQIQDFAST-QSFSFGVK------ASVKLVLLDEADAM 153
+ M+LELNASDDRGIDVVR+QI+ F+ST Q F+ K A+ KL++LDEADAM
Sbjct: 104 KNMRQMVLELNASDDRGIDVVREQIKTFSSTKQIFASAPKTGDSSLATFKLIILDEADAM 163
Query: 154 TKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVI 213
T AQ ALRR++EKYT NTRF +I N +K+ PAL SRCTRFRF+PL+ + + VI
Sbjct: 164 TATAQMALRRIMEKYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKDQDIRNLVDKVI 223
Query: 214 EAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMAS------------------QQITE 255
E E +++T+ +LV L GDMR+ALN+LQ+ H +S QIT+
Sbjct: 224 EDEKVNITQDATGSLVTLSKGDMRRALNVLQACHASSTPLQPPGKPAVDPNTIVRDQITQ 283
Query: 256 EAVYLCTGNPLPKDIEQISYWLLNES-FADSFKRISEMKMRKGLALVDIVREVTMFVFKI 314
+Y C P P DI+ I LL+++ + + ++ +K+ KGLAL DI+ V+ +
Sbjct: 284 TTIYDCIAAPHPSDIKYILETLLSKNDMTECLRTVNNLKIMKGLALADILTAVSEELVTN 343
Query: 315 KMPSDVRVRLMNDLADIEYRLSFGCNDKLQLGSIIS 350
+P V V M+ LADIEYRLS G ++ +Q G+ I
Sbjct: 344 DVPPQVMVTWMSGLADIEYRLSGGGSETIQTGAAIG 379
>gi|126137263|ref|XP_001385155.1| DNA replication factor C [Scheffersomyces stipitis CBS 6054]
gi|126092377|gb|ABN67126.1| DNA replication factor C [Scheffersomyces stipitis CBS 6054]
Length = 322
Score = 313 bits (801), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 158/317 (49%), Positives = 215/317 (67%), Gaps = 9/317 (2%)
Query: 44 VEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQY 103
VEKYRP +L +V +IV T+ + ENRLPHLL YGPPGTGKTSTI+A+AR++YG Y
Sbjct: 3 VEKYRPSTLDEVYGQEEIVQTVKKFAHENRLPHLLFYGPPGTGKTSTIIALAREIYGTNY 62
Query: 104 HNMILELNASDDRGIDVVRQQIQDFAST-QSFSFGVKASVKLVLLDEADAMTKDAQFALR 162
NM+LELNASDDRGIDVVR QI++FAST Q FS G KL++LDEADAMT AQ +LR
Sbjct: 63 KNMVLELNASDDRGIDVVRNQIKNFASTMQIFSRG----FKLIILDEADAMTAVAQNSLR 118
Query: 163 RVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTE 222
R+IEKYTKNTRF ++ N +K+ PAL SRCTRFRF P+ + +R+++VI E L +
Sbjct: 119 RIIEKYTKNTRFCILANYAHKLNPALLSRCTRFRFHPISEDAIKDRIQNVIIKESLKIDP 178
Query: 223 GGLAALVRLCNGDMRKALNILQSTH----MASQQITEEAVYLCTGNPLPKDIEQISYWLL 278
AAL++L GDMR+ALN+LQ+ A ++ITE+ +Y C G P PKDIE + +L
Sbjct: 179 PAEAALLKLSKGDMRRALNVLQACKSAVDSADEEITEDMIYECVGAPHPKDIEVVLDSIL 238
Query: 279 NESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFG 338
+ + ++ I++ K KGLAL+D++ + + K+ R+ + L++IEY +S G
Sbjct: 239 KDDWTTAYITINKYKTTKGLALIDLISGFIEILNQYKLQGKTRIEIFKGLSEIEYGISRG 298
Query: 339 CNDKLQLGSIISTFTQA 355
NDK+Q +II A
Sbjct: 299 GNDKIQSSAIIGVIKDA 315
>gi|340505649|gb|EGR31962.1| replication factor c subunit, putative [Ichthyophthirius
multifiliis]
Length = 359
Score = 313 bits (801), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 160/344 (46%), Positives = 225/344 (65%), Gaps = 22/344 (6%)
Query: 37 DIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSE-NRLPHLLLYGPPGTGKTSTILAVA 95
DI+ PWVEKYRP +L D+ +H IV TI + +E N+LP+LL YGPPGTGKTSTI+A+A
Sbjct: 15 DIENIPWVEKYRPDTLKDLISHEFIVMTITKFINEQNKLPNLLFYGPPGTGKTSTIVAIA 74
Query: 96 RKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTK 155
++LYG Y M+LELNASDDRGI+VVR QI+ FA T +FS K + KL++LDEAD MT
Sbjct: 75 KQLYGNSYKQMVLELNASDDRGINVVRDQIKTFAGTANFSAAGKGT-KLIILDEADQMTN 133
Query: 156 DAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEA 215
AQFALRR+IEKY+ N RF LICN V+KIIPALQSRCTRF+F + +R++ +
Sbjct: 134 QAQFALRRIIEKYSNNARFCLICNYVSKIIPALQSRCTRFKFKHIPIEDAQKRIEEICLI 193
Query: 216 EGLDVTEGGLAALVRLCNGDMRKALNILQ-------STHMASQQ-------------ITE 255
E + + GL A+ +LC+GDMR+ +N+LQ + QQ + E
Sbjct: 194 EKIKYDQSGLEAIFKLCDGDMRRVVNMLQVKQFQYIYIYYIFQQSLQLQSNILNQVFVNE 253
Query: 256 EAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIK 315
E VY TGN P+D+E+I LL E+ ++++ I + ++ KG++L I++E+ M + +
Sbjct: 254 EFVYKFTGNATPQDMEEILNILLTENLINAYETIRKYQVLKGISLQVILKELNMKLMYSR 313
Query: 316 MPSDVRVRLMNDLADIEYRLSFGCNDKLQLGSIISTFTQARSAI 359
PS L+ +A++EYR+S C +K+QL S+I F + R I
Sbjct: 314 YPSIALEFLVKRIAELEYRMSISCEEKVQLLSLIGVFIEIRHTI 357
>gi|45190411|ref|NP_984665.1| AEL196Wp [Ashbya gossypii ATCC 10895]
gi|44983307|gb|AAS52489.1| AEL196Wp [Ashbya gossypii ATCC 10895]
gi|374107881|gb|AEY96788.1| FAEL196Wp [Ashbya gossypii FDAG1]
Length = 333
Score = 313 bits (801), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 162/327 (49%), Positives = 217/327 (66%), Gaps = 9/327 (2%)
Query: 31 VSGTPPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTST 90
+SG + PW+EKYRP SL DV RD+V+T+ + E RLPHLL YGPPGTGKTST
Sbjct: 1 MSGVARNANNLPWIEKYRPDSLDDVYGQRDVVETVRKFVQEGRLPHLLFYGPPGTGKTST 60
Query: 91 ILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFAST-QSFSFGVKASVKLVLLDE 149
I A+A+++YG Y NM+LELNASDDRGIDVVR QI++FAST Q FS G KL++LDE
Sbjct: 61 ICALAKEIYGKNYRNMVLELNASDDRGIDVVRNQIKEFASTRQIFSKG----FKLIILDE 116
Query: 150 ADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERL 209
ADAMT AQ ALRR+IEKYTKNTRF ++ N +K+ PAL SRCTRFRF PL + R+
Sbjct: 117 ADAMTSAAQNALRRIIEKYTKNTRFCILANYAHKLTPALLSRCTRFRFQPLAEAAIERRV 176
Query: 210 KHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMA----SQQITEEAVYLCTGNP 265
++ E L +TE AAL+RL GDMR+ALN+LQ+ +Q +TE+ VY C G P
Sbjct: 177 LSIMAHEHLQLTEDARAALLRLAAGDMRRALNVLQAAKATLDDPAQPVTEDVVYDCVGAP 236
Query: 266 LPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLM 325
P+DIE + +L + +A + + +++ +GLALVD++ + + R+ L+
Sbjct: 237 HPRDIETVVDSILRDDWATALDTVRRVRVARGLALVDMIHGAVELLTSYDLKQPTRIALL 296
Query: 326 NDLADIEYRLSFGCNDKLQLGSIISTF 352
LADIEY +S G +DK+Q + I+
Sbjct: 297 THLADIEYAVSKGGSDKIQTSAAIAAI 323
>gi|296817467|ref|XP_002849070.1| replication factor C subunit 3 [Arthroderma otae CBS 113480]
gi|238839523|gb|EEQ29185.1| replication factor C subunit 3 [Arthroderma otae CBS 113480]
Length = 397
Score = 312 bits (799), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 163/336 (48%), Positives = 219/336 (65%), Gaps = 25/336 (7%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP +L DV+ H+DI+ TI+R NRLPHLLLYGPPGTGKTSTILA+AR++YG+
Sbjct: 46 PWVEKYRPDTLDDVSGHQDIIATINRFVESNRLPHLLLYGPPGTGKTSTILALARRIYGS 105
Query: 102 Q-YHNMILELNASDDRGIDVVRQQIQDFAST-QSFSFGVKA-----SVKLVLLDEADAMT 154
+ M+LELNASDDRGIDVVR+QI+ FAST Q FS + + KL++LDEADAMT
Sbjct: 106 KNMRQMVLELNASDDRGIDVVREQIKTFASTKQIFSTAPSSGSGLGAFKLIILDEADAMT 165
Query: 155 KDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIE 214
AQ ALRR++EKYT NTRF +I N +K+ PAL SRCTRFRF+PL+ + + + VI+
Sbjct: 166 SAAQMALRRIMEKYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKEQDIRKLVDTVID 225
Query: 215 AEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMAS-----------------QQITEEA 257
E + + + +LV+L GDMR+ALN+LQ+ H +S + ITEE
Sbjct: 226 KEQVQIQPDAIDSLVKLSKGDMRRALNVLQACHASSMPLPSKKGEANESPEERELITEET 285
Query: 258 VYLCTGNPLPKDIEQISYWLLNESFADS-FKRISEMKMRKGLALVDIVREVTMFVFKIKM 316
+Y C P P DI I LL+ S S + +K KGLAL DI+ ++ + +++
Sbjct: 286 IYTCIAAPHPTDIRTILETLLSTSDVTSCLNTVQTLKSNKGLALADIITALSTELQSLEV 345
Query: 317 PSDVRVRLMNDLADIEYRLSFGCNDKLQLGSIISTF 352
P VRV + LAD+E+RLS G ++ +Q G +I
Sbjct: 346 PPQVRVSWIEGLADVEWRLSGGGSEAIQTGGMIGVI 381
>gi|326475565|gb|EGD99574.1| DNA replication factor C subunit Rfc3 [Trichophyton tonsurans CBS
112818]
gi|326483166|gb|EGE07176.1| DNA replication factor C subunit Rfc3 [Trichophyton equinum CBS
127.97]
Length = 397
Score = 312 bits (799), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 164/336 (48%), Positives = 219/336 (65%), Gaps = 25/336 (7%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP +L DV+ H+DI+ TI+R NRLPHLLLYGPPGTGKTSTILA+AR++YG+
Sbjct: 46 PWVEKYRPDTLDDVSGHQDIIATINRFVDSNRLPHLLLYGPPGTGKTSTILALARRIYGS 105
Query: 102 Q-YHNMILELNASDDRGIDVVRQQIQDFAST-QSFSFGVKA-----SVKLVLLDEADAMT 154
+ M+LELNASDDRGIDVVR+QI+ FAST Q FS + + KL++LDEADAMT
Sbjct: 106 KNMRQMVLELNASDDRGIDVVREQIKTFASTKQIFSTAPSSGSGLGAFKLIILDEADAMT 165
Query: 155 KDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIE 214
AQ ALRR++EKYT NTRF +I N +K+ PAL SRCTRFRF+PL+ + + VIE
Sbjct: 166 SAAQMALRRIMEKYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKEKDIRRLVDTVIE 225
Query: 215 AEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMAS-----------------QQITEEA 257
E + + + +LV L GDMR+ALN+LQ+ H +S + ITEE
Sbjct: 226 KEEVQIQPDAVDSLVTLSKGDMRRALNVLQACHASSMPLPSKKGDGNEQQQERETITEET 285
Query: 258 VYLCTGNPLPKDIEQISYWLLNESFADS-FKRISEMKMRKGLALVDIVREVTMFVFKIKM 316
+Y C P P DI+ I LL+ S S + +K KGLAL DI+ ++ + +++
Sbjct: 286 IYTCIAAPHPADIKIILETLLSTSDVTSCLNTVQTLKANKGLALADIISALSTELQSLEV 345
Query: 317 PSDVRVRLMNDLADIEYRLSFGCNDKLQLGSIISTF 352
P+ VRV + LAD+E+RLS G ++ +Q G +I
Sbjct: 346 PAQVRVSWIEGLADVEWRLSGGGSEVIQTGGMIGVI 381
>gi|189189278|ref|XP_001930978.1| replication factor C subunit 3 [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187972584|gb|EDU40083.1| replication factor C subunit 3 [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 393
Score = 311 bits (798), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 163/336 (48%), Positives = 220/336 (65%), Gaps = 27/336 (8%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP SL DV H+DI+ TI++ NRLPHLLLYGPPGTGKTST+LA+AR++YG
Sbjct: 44 PWVEKYRPNSLDDVEGHKDIIATINKFVDSNRLPHLLLYGPPGTGKTSTVLALARRIYGN 103
Query: 102 Q-YHNMILELNASDDRGIDVVRQQIQDFAST-QSFSFGVKA------SVKLVLLDEADAM 153
+ M+LELNASDDRGIDVVR+QI+ F+ST Q F+ +A + KL++LDEADAM
Sbjct: 104 KNMRQMVLELNASDDRGIDVVREQIKTFSSTKQIFAAAPRAGDSSLATFKLIILDEADAM 163
Query: 154 TKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVI 213
T AQ ALRR++EKYT NTRF +I N +K+ PAL SRCTRFRF+PL+ + + VI
Sbjct: 164 TATAQMALRRIMEKYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKDQDIRNLVDKVI 223
Query: 214 EAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMAS------------------QQITE 255
E E +++T+ +LV L GDMR+ALN+LQ+ H +S QIT+
Sbjct: 224 EDEKVNITQDATGSLVTLSKGDMRRALNVLQACHASSTPLQPPGRPAVDPNTIVRDQITQ 283
Query: 256 EAVYLCTGNPLPKDIEQISYWLLNES-FADSFKRISEMKMRKGLALVDIVREVTMFVFKI 314
+Y C P P DI+ I LL+++ + + ++ +K+ KGLAL DI+ V+ +
Sbjct: 284 TTIYDCIAAPHPSDIKYILETLLSKNDMTECLRTVNNLKIMKGLALADILTAVSEELVTN 343
Query: 315 KMPSDVRVRLMNDLADIEYRLSFGCNDKLQLGSIIS 350
+P V V M+ LADIEYRLS G ++ +Q G+ I
Sbjct: 344 DVPPQVMVTWMSGLADIEYRLSGGGSETIQTGAAIG 379
>gi|410075631|ref|XP_003955398.1| hypothetical protein KAFR_0A08290 [Kazachstania africana CBS 2517]
gi|372461980|emb|CCF56263.1| hypothetical protein KAFR_0A08290 [Kazachstania africana CBS 2517]
Length = 332
Score = 311 bits (798), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 154/322 (47%), Positives = 224/322 (69%), Gaps = 15/322 (4%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP +L DV ++IV T+ + E +LPHLL YGPPGTGKTSTI+A+AR++YG
Sbjct: 11 PWVEKYRPVTLDDVYGQKEIVGTVRKFVEEGKLPHLLFYGPPGTGKTSTIIALAREIYGK 70
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFAST-QSFSFGVKASVKLVLLDEADAMTKDAQFA 160
Y NM+LELNASDDRGIDVVR QI++FAST Q FS G KL++LDEADAMT AQ A
Sbjct: 71 NYSNMVLELNASDDRGIDVVRNQIKEFASTRQIFSKG----FKLIILDEADAMTNAAQNA 126
Query: 161 LRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDV 220
LRR+IEKYTKNTRF ++ N +K+ PAL SRCTRFRF PL + R+ +V+ E L +
Sbjct: 127 LRRIIEKYTKNTRFCILANYAHKLTPALLSRCTRFRFQPLPSDAIETRIANVLVHENLKL 186
Query: 221 TEGGLAALVRLCNGDMRKALNILQSTHM-----ASQQITEEAVYLCTGNPLPKDIEQISY 275
+ AL+ L GDMR+ LN+LQ++ ++++IT++ +Y C G P P+D+E +
Sbjct: 187 NDTAKRALLDLSKGDMRRVLNVLQASRATLDDPSNEEITDDIIYECVGAPRPEDLETVLK 246
Query: 276 WLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDV-RVRLMNDLADIEYR 334
+L + ++ ++ +++++ KGLAL+D++ + + + ++ ++V R+ L+ L DIEY
Sbjct: 247 SILEDDWSTAYYTLTKVRTMKGLALIDLIEGIVKILEEYELKNEVTRIELLTRLGDIEYA 306
Query: 335 LSFGCNDKLQ----LGSIISTF 352
+S G NDK+Q +G+I ++F
Sbjct: 307 ISKGGNDKIQSSAVIGAIKTSF 328
>gi|67902154|ref|XP_681333.1| hypothetical protein AN8064.2 [Aspergillus nidulans FGSC A4]
gi|40740496|gb|EAA59686.1| hypothetical protein AN8064.2 [Aspergillus nidulans FGSC A4]
gi|259480821|tpe|CBF73811.1| TPA: subunit of heteropentameric Replication factor (Eurofung)
[Aspergillus nidulans FGSC A4]
Length = 398
Score = 311 bits (798), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 162/338 (47%), Positives = 220/338 (65%), Gaps = 27/338 (7%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP +L DV+ H+DI+ TI+R N+LPHLLLYGPPGTGKTSTILA+AR++YG+
Sbjct: 46 PWVEKYRPNTLDDVSGHKDILATINRFVEANQLPHLLLYGPPGTGKTSTILALARRIYGS 105
Query: 102 Q-YHNMILELNASDDRGIDVVRQQIQDFAST-QSFSFGVKA-------SVKLVLLDEADA 152
+ M+LELNASDDRGIDVVR+QI+ FAST Q FS A S KL++LDEADA
Sbjct: 106 KNMRQMVLELNASDDRGIDVVREQIKTFASTKQIFSMAPSATGKSSLASFKLIILDEADA 165
Query: 153 MTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHV 212
MT AQ ALRR++EKYT NTRF +I N +K+ PAL SRCTRFRF+PL+ + + V
Sbjct: 166 MTSTAQMALRRIMEKYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKEQDIRVLIDQV 225
Query: 213 IEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMAS-----------------QQITE 255
IE E + + + +LV L GDMR+ALN+LQ+ H +S + IT
Sbjct: 226 IEKEDVRIQPEAVDSLVTLSRGDMRRALNVLQACHASSKPLPIKNAPQDQAVPEPETITN 285
Query: 256 EAVYLCTGNPLPKDIEQISYWLLNESFADS-FKRISEMKMRKGLALVDIVREVTMFVFKI 314
E +Y C P P DI+QI LL S S ++ +K+ KGLAL DI+ + ++++
Sbjct: 286 ETIYDCIAAPHPADIQQIVTTLLATSDVTSCLNTLNTLKINKGLALADILSALGEQLYRL 345
Query: 315 KMPSDVRVRLMNDLADIEYRLSFGCNDKLQLGSIISTF 352
++P+ R+ + LA+IE+RLS G ++ +Q G ++
Sbjct: 346 EVPAQTRITWLEGLAEIEWRLSAGGSETVQTGGLVGVI 383
>gi|332840531|ref|XP_003314006.1| PREDICTED: replication factor C subunit 5 [Pan troglodytes]
Length = 255
Score = 311 bits (797), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 152/258 (58%), Positives = 193/258 (74%), Gaps = 3/258 (1%)
Query: 106 MILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVI 165
M+LELNASDDRGID+VR I FAST++ K KLV+LDEADAMT+DAQ ALRRVI
Sbjct: 1 MVLELNASDDRGIDIVRGPILSFASTRTI---FKKGFKLVILDEADAMTQDAQNALRRVI 57
Query: 166 EKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGL 225
EK+T+NTRF LICN ++KIIPALQSRCTRFRF PL P + RL+HV+E E + ++E G+
Sbjct: 58 EKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVGISEDGM 117
Query: 226 AALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESFADS 285
ALV L +GDMR+ALNILQST+MA ++TEE VY CTG+PL DI I W+LN F +
Sbjct: 118 KALVTLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKSDIANILDWMLNRDFTTA 177
Query: 286 FKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDKLQL 345
++ I+E+K KGLAL DI+ E+ +FV ++ PS VR+ L+ +ADIEYRLS G N+K+QL
Sbjct: 178 YRNITELKTLKGLALHDILTEIHLFVHRVDFPSSVRIHLLTKMADIEYRLSVGTNEKIQL 237
Query: 346 GSIISTFTQARSAIVAAA 363
S+I+ F R IVA A
Sbjct: 238 SSLIAAFQVTRDLIVAEA 255
>gi|448515699|ref|XP_003867395.1| Rcf3 heteropentameric replication factor C subunit [Candida
orthopsilosis Co 90-125]
gi|380351734|emb|CCG21957.1| Rcf3 heteropentameric replication factor C subunit [Candida
orthopsilosis]
Length = 333
Score = 311 bits (796), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 154/318 (48%), Positives = 213/318 (66%), Gaps = 4/318 (1%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP++L +V +DIV+TI R +LPHLL YGPPGTGKTSTI+A+AR++YG
Sbjct: 10 PWVEKYRPENLTEVYGQQDIVNTIRRFVETGKLPHLLFYGPPGTGKTSTIIALAREIYGP 69
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFAST-QSFSFGVKASVKLVLLDEADAMTKDAQFA 160
Y NM+LELNASDDRGIDVVR QI+ FAST Q F+ KL++LDEADAMT AQ +
Sbjct: 70 HYKNMVLELNASDDRGIDVVRNQIKSFASTRQIFTSSSSPQFKLIILDEADAMTSVAQNS 129
Query: 161 LRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDV 220
LRR+IE+YTKN RF ++ N +K+ PAL SRCTRFRF P++ + R+ +VI E +++
Sbjct: 130 LRRIIERYTKNCRFCILANYSHKLNPALISRCTRFRFHPIDEEAIRSRIDNVIIKEKVNI 189
Query: 221 TEGGLAALVRLCNGDMRKALNILQSTHMAS---QQITEEAVYLCTGNPLPKDIEQISYWL 277
T L AL+RL GDMR++LN+LQ+ A + I E +Y C G P P+DIE + +
Sbjct: 190 TPDALNALLRLSQGDMRRSLNVLQACKAACGDDETIDIEMIYNCVGAPHPQDIEAVLDSI 249
Query: 278 LNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSF 337
L + + ++ +++ K+ KGLALVD++ + K+ R+ + L ++EY +S
Sbjct: 250 LKQDWTTAYLTLNKYKIDKGLALVDLITGFIEILNDYKVKPKTRIEYLKGLCEVEYGISK 309
Query: 338 GCNDKLQLGSIISTFTQA 355
G NDK+Q +II QA
Sbjct: 310 GGNDKIQSSAIIGVIKQA 327
>gi|303319413|ref|XP_003069706.1| Activator 1 subunit 3 , putative [Coccidioides posadasii C735 delta
SOWgp]
gi|240109392|gb|EER27561.1| Activator 1 subunit 3 , putative [Coccidioides posadasii C735 delta
SOWgp]
Length = 398
Score = 311 bits (796), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 166/339 (48%), Positives = 218/339 (64%), Gaps = 28/339 (8%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP +L DV+ H+DI+ TI+R NRLPHLLLYGPPGTGKTSTILA+AR++YG
Sbjct: 44 PWVEKYRPSTLDDVSGHQDIIATINRFIESNRLPHLLLYGPPGTGKTSTILALARQIYGV 103
Query: 102 Q-YHNMILELNASDDRGIDVVRQQIQDFAST-QSFSF------GVK-ASVKLVLLDEADA 152
+ M+LELNASDDRGIDVVR+QI+ FAST Q FS G K + KL++LDEADA
Sbjct: 104 KNVRQMVLELNASDDRGIDVVREQIKTFASTKQIFSMTPGGQAGSKLGAFKLIILDEADA 163
Query: 153 MTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHV 212
MT AQ ALRR++EKYT NTRF +I N +K+ PAL SRCTRFRF+PL+ + + V
Sbjct: 164 MTAAAQMALRRIMEKYTANTRFCIIANYTHKLTPALLSRCTRFRFSPLKEQDIRVLVDQV 223
Query: 213 IEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMAS------------------QQIT 254
IE E + + + +LVRL GDMR+ALN+LQ+ H +S + IT
Sbjct: 224 IEKEQVRIQPDAIDSLVRLSKGDMRRALNVLQACHASSMPLPLRDVPRDQQPAREPETIT 283
Query: 255 EEAVYLCTGNPLPKDIEQISYWLLNESFADS-FKRISEMKMRKGLALVDIVREVTMFVFK 313
++ +Y C P P DI+ I LL+ S S I +K+ KGLAL DI+ + +
Sbjct: 284 DDTIYTCIAAPRPSDIKTIMETLLSTSDVTSCLNTIQTLKISKGLALADILTALANELQH 343
Query: 314 IKMPSDVRVRLMNDLADIEYRLSFGCNDKLQLGSIISTF 352
I++P+ RV + LADIE+RLS G + +Q G ++
Sbjct: 344 IEVPAQTRVAWLEGLADIEWRLSGGGAEAIQTGGLVGVI 382
>gi|451999620|gb|EMD92082.1| hypothetical protein COCHEDRAFT_1193657 [Cochliobolus
heterostrophus C5]
Length = 392
Score = 311 bits (796), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 164/335 (48%), Positives = 219/335 (65%), Gaps = 27/335 (8%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP SL DV H+DI+ TI++ NRLPHLLLYGPPGTGKTST+LA+AR++YG
Sbjct: 43 PWVEKYRPASLDDVEGHKDIIATINKFVDSNRLPHLLLYGPPGTGKTSTVLALARRIYGN 102
Query: 102 Q-YHNMILELNASDDRGIDVVRQQIQDFAST-QSFSFGVKA------SVKLVLLDEADAM 153
+ M+LELNASDDRGI+VVR+QI+ F+ST Q FS KA + KL++LDEADAM
Sbjct: 103 KNMRQMVLELNASDDRGIEVVREQIKTFSSTKQIFSAAPKAGDSSLATFKLIVLDEADAM 162
Query: 154 TKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVI 213
T AQ ALRR++EKYT NTRF +I N +K+ PAL SRCTRFRF+PL+ + + VI
Sbjct: 163 TSTAQMALRRIMEKYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKDQDIRHLVDKVI 222
Query: 214 EAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMAS------------------QQITE 255
E E +++T+ +LV L GDMR+ALN+LQ+ H +S QIT+
Sbjct: 223 EEEKVNITQDATDSLVTLSKGDMRRALNVLQACHASSTPLQPPGKPAVDPSSIVRDQITQ 282
Query: 256 EAVYLCTGNPLPKDIEQISYWLLNES-FADSFKRISEMKMRKGLALVDIVREVTMFVFKI 314
+Y C P P DI+ I LL+++ + + I+ +K KGLAL DI+ ++ +
Sbjct: 283 TTIYDCIAAPHPSDIKYIIETLLSKNDMTECLRTINNLKTLKGLALADILTAISEELVAN 342
Query: 315 KMPSDVRVRLMNDLADIEYRLSFGCNDKLQLGSII 349
+P V V M+ LADIEYRLS G ++ +Q G+ I
Sbjct: 343 DVPPQVMVTWMSGLADIEYRLSGGGSEAIQTGAAI 377
>gi|320040847|gb|EFW22780.1| DNA replication factor C subunit [Coccidioides posadasii str.
Silveira]
Length = 398
Score = 310 bits (795), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 164/339 (48%), Positives = 219/339 (64%), Gaps = 28/339 (8%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP +L DV+ H+DI+ TI+R NRLPHLLLYGPPGTGKTSTILA+AR++YG
Sbjct: 44 PWVEKYRPSTLDDVSGHQDIIATINRFIESNRLPHLLLYGPPGTGKTSTILALARQIYGV 103
Query: 102 Q-YHNMILELNASDDRGIDVVRQQIQDFASTQ---SFSFGVKA-----SVKLVLLDEADA 152
+ M+LELNASDDRGIDVVR+QI+ FAST+ S + G +A + KL++LDEADA
Sbjct: 104 KNVRQMVLELNASDDRGIDVVREQIKTFASTKQIFSMTPGGQAGSNLGAFKLIILDEADA 163
Query: 153 MTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHV 212
MT AQ ALRR++EKYT NTRF +I N +K+ PAL SRCTRFRF+PL+ + + V
Sbjct: 164 MTAAAQMALRRIMEKYTANTRFCIIANYTHKLTPALLSRCTRFRFSPLKEQDIRVLVDQV 223
Query: 213 IEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMAS------------------QQIT 254
IE E + + + +LVRL GDMR+ALN+LQ+ H +S + IT
Sbjct: 224 IEKEQVRIQPDAIDSLVRLSKGDMRRALNVLQACHASSMPLPLRDVPRDQQPAREPETIT 283
Query: 255 EEAVYLCTGNPLPKDIEQISYWLLNESFADS-FKRISEMKMRKGLALVDIVREVTMFVFK 313
++ +Y C P P DI+ I LL+ S S I +K+ KGLAL DI+ + +
Sbjct: 284 DDTIYTCIAAPRPSDIKTIMETLLSTSDVTSCLNTIQTLKISKGLALADILTALANELQH 343
Query: 314 IKMPSDVRVRLMNDLADIEYRLSFGCNDKLQLGSIISTF 352
I++P+ RV + LADIE+RLS G + +Q G ++
Sbjct: 344 IEVPAQTRVAWLEGLADIEWRLSGGGAEAIQTGGLVGVI 382
>gi|169626367|ref|XP_001806584.1| hypothetical protein SNOG_16470 [Phaeosphaeria nodorum SN15]
gi|111055048|gb|EAT76168.1| hypothetical protein SNOG_16470 [Phaeosphaeria nodorum SN15]
Length = 393
Score = 310 bits (795), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 164/335 (48%), Positives = 218/335 (65%), Gaps = 27/335 (8%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP SL DV H+DI+ TI++ NRLPHLLLYGPPGTGKTST+LA+AR++YG
Sbjct: 44 PWVEKYRPTSLDDVEGHKDIIATINKFVDSNRLPHLLLYGPPGTGKTSTVLALARRIYGN 103
Query: 102 Q-YHNMILELNASDDRGIDVVRQQIQDFAST-QSFSFGVKA------SVKLVLLDEADAM 153
+ M+LELNASDDRGIDVVR+QI+ F+ST Q FS KA + KL++LDEADAM
Sbjct: 104 KNMRQMVLELNASDDRGIDVVREQIKTFSSTKQIFSAAPKAGDSALATFKLIILDEADAM 163
Query: 154 TKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVI 213
T AQ ALRR++EKYT NTRF +I N +K+ PAL SRCTRFRF+PL+ + + VI
Sbjct: 164 TATAQMALRRIMEKYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKDQDIRNLVDKVI 223
Query: 214 EAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMAS------------------QQITE 255
E E +++T+ ++LV L GDMR+ALN+LQ+ H +S +IT+
Sbjct: 224 EDEKVNITQDAASSLVTLSKGDMRRALNVLQACHASSTPLQPPGKPAPDPNTIERDEITQ 283
Query: 256 EAVYLCTGNPLPKDIEQISYWLLN-ESFADSFKRISEMKMRKGLALVDIVREVTMFVFKI 314
+Y C P P DI+ I LL+ + + ++ +K KGLAL DI+ V+ +
Sbjct: 284 TTIYDCIAAPHPSDIKFILETLLSTQDMTQCLRTVNNLKTMKGLALADILTAVSEELVTN 343
Query: 315 KMPSDVRVRLMNDLADIEYRLSFGCNDKLQLGSII 349
+P V V M+ LADIEYRLS G ++ +Q G+ I
Sbjct: 344 DVPPQVMVTWMSGLADIEYRLSGGGSEAIQTGAAI 378
>gi|119182767|ref|XP_001242497.1| hypothetical protein CIMG_06393 [Coccidioides immitis RS]
gi|392865396|gb|EAS31179.2| activator 1 subunit 3 [Coccidioides immitis RS]
Length = 398
Score = 310 bits (794), Expect = 7e-82, Method: Compositional matrix adjust.
Identities = 166/339 (48%), Positives = 218/339 (64%), Gaps = 28/339 (8%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP +L DV+ H+DI+ TI+R NRLPHLLLYGPPGTGKTSTILA+AR++YG
Sbjct: 44 PWVEKYRPSTLDDVSGHQDIIATINRFIESNRLPHLLLYGPPGTGKTSTILALARQIYGV 103
Query: 102 Q-YHNMILELNASDDRGIDVVRQQIQDFAST-QSFSF------GVK-ASVKLVLLDEADA 152
+ M+LELNASDDRGIDVVR+QI+ FAST Q FS G K + KL++LDEADA
Sbjct: 104 KNVRQMVLELNASDDRGIDVVREQIKTFASTKQIFSMTPGGQAGSKLGAFKLIILDEADA 163
Query: 153 MTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHV 212
MT AQ ALRR++EKYT NTRF +I N +K+ PAL SRCTRFRF+PL+ + + V
Sbjct: 164 MTAAAQMALRRIMEKYTANTRFCIIANYTHKLTPALLSRCTRFRFSPLKEQDIRVLVDQV 223
Query: 213 IEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMAS------------------QQIT 254
IE E + + + +LVRL GDMR+ALN+LQ+ H +S + IT
Sbjct: 224 IEKEQVRIQPDAIDSLVRLSKGDMRRALNVLQACHASSMPLPLRDVPKDQQPAREPETIT 283
Query: 255 EEAVYLCTGNPLPKDIEQISYWLLNESFADS-FKRISEMKMRKGLALVDIVREVTMFVFK 313
++ +Y C P P DI+ I LL+ S S I +K+ KGLAL DI+ + +
Sbjct: 284 DDTIYTCIAAPRPLDIKTIMETLLSTSDVTSCLNTIQTLKISKGLALADILTALANELQH 343
Query: 314 IKMPSDVRVRLMNDLADIEYRLSFGCNDKLQLGSIISTF 352
I++P+ RV + LADIE+RLS G + +Q G ++
Sbjct: 344 IEVPAQTRVAWLEGLADIEWRLSGGGAEAIQTGGLVGVI 382
>gi|212541869|ref|XP_002151089.1| DNA replication factor C subunit Rfc3, putative [Talaromyces
marneffei ATCC 18224]
gi|210065996|gb|EEA20089.1| DNA replication factor C subunit Rfc3, putative [Talaromyces
marneffei ATCC 18224]
Length = 397
Score = 310 bits (794), Expect = 8e-82, Method: Compositional matrix adjust.
Identities = 171/370 (46%), Positives = 233/370 (62%), Gaps = 33/370 (8%)
Query: 10 MDFDEDENQNLKPKDNGKNVIVSGTPPDIKAS-PWVEKYRPQSLADVAAHRDIVDTIDRL 68
M F D N N K K IV+ P + + PWVEKYRP SL +V H+DI+ TI+R
Sbjct: 18 MKFSSD-NTNTKGKK-----IVADLPIGAEDNLPWVEKYRPSSLDEVQGHQDILATINRF 71
Query: 69 TSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ-YHNMILELNASDDRGIDVVRQQIQD 127
+RLPHLLLYGPPGTGKT+TILA+AR++YG++ M+LELNASDDRGIDVVR+QI+
Sbjct: 72 IDSHRLPHLLLYGPPGTGKTTTILALARRIYGSKNMRQMVLELNASDDRGIDVVREQIKT 131
Query: 128 FAST-QSFSFGVKA------SVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQ 180
FAST Q FS A + KL++LDEADAMT AQ ALRR++EKYT N RF +I N
Sbjct: 132 FASTKQIFSVAAPAKENSLGAFKLIILDEADAMTATAQMALRRIMEKYTANARFCIIANY 191
Query: 181 VNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKAL 240
+K+ PAL SRCTRFRF+PL+ V + + VIEAE + + + +LVRL GDMR+AL
Sbjct: 192 THKLSPALLSRCTRFRFSPLKEVDIRSLVDKVIEAENVRIQPQAIESLVRLSKGDMRRAL 251
Query: 241 NILQSTHMAS-----------------QQITEEAVYLCTGNPLPKDIEQISYWLLNESFA 283
N+LQ+ H +S + IT++ +Y C P P DI +I LL+ S
Sbjct: 252 NVLQACHASSIPLPMRNAPKEQPPPEHELITDDTIYNCIAAPHPSDIREIMTTLLSTSDV 311
Query: 284 DS-FKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDK 342
S I+ +KM KGLAL DI+ + + +++P+ R+ + LA++E+RLS G ++
Sbjct: 312 TSCLNTINTLKMSKGLALADILSALGEQLQTLEVPAQTRISWLEGLAEVEWRLSGGGSEM 371
Query: 343 LQLGSIISTF 352
+Q G ++
Sbjct: 372 VQTGGLVGVI 381
>gi|408397619|gb|EKJ76759.1| hypothetical protein FPSE_02945 [Fusarium pseudograminearum CS3096]
Length = 390
Score = 310 bits (793), Expect = 9e-82, Method: Compositional matrix adjust.
Identities = 160/336 (47%), Positives = 222/336 (66%), Gaps = 28/336 (8%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP +L DV+ H+DI+ TI++ +NRLPHLLLYGPPGTGKTSTILA+AR++YGA
Sbjct: 43 PWVEKYRPTTLDDVSGHQDILATINKFIEQNRLPHLLLYGPPGTGKTSTILALARRIYGA 102
Query: 102 -QYHNMILELNASDDRGIDVVRQQIQDFAST-QSFSFG-------VKASVKLVLLDEADA 152
M+LELNASDDRGIDVVR+QI+ FAST Q FS G A KL++LDEADA
Sbjct: 103 ANMRQMVLELNASDDRGIDVVREQIKTFASTKQIFSLGGASRSGNAMAGFKLIILDEADA 162
Query: 153 MTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHV 212
MT AQ ALRR++EKYT NTRF +I N +K+ PAL SRCTRFRF+PL+ + + V
Sbjct: 163 MTSTAQMALRRIMEKYTTNTRFCIIANYSHKLSPALLSRCTRFRFSPLKEGDIRVLVDKV 222
Query: 213 IEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMAS------------------QQIT 254
+E E + V + ALV+L GDMR+ALN+LQ+ H +S + IT
Sbjct: 223 VEEENVQVKGEAIDALVKLSKGDMRRALNVLQACHASSTPLRAKDAPKVPDSEIQRENIT 282
Query: 255 EEAVYLCTGNPLPKDIEQISYWLLNESFADS-FKRISEMKMRKGLALVDIVREVTMFVFK 313
E +Y C P P I++I LL S S I+ +K+++GLAL DI+ ++ + K
Sbjct: 283 TETIYNCIAAPPPDAIKEIVSTLLKTSDVTSCLNTINALKVQRGLALADIITALSEELVK 342
Query: 314 IKMPSDVRVRLMNDLADIEYRLSFGCNDKLQLGSII 349
+++ +V + ++ LA+IE+R++ G ++ +Q G+++
Sbjct: 343 LEVSPEVMITWLDGLANIEHRVASGSSESIQTGAVV 378
>gi|354547265|emb|CCE43999.1| hypothetical protein CPAR2_502240 [Candida parapsilosis]
Length = 337
Score = 310 bits (793), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 153/322 (47%), Positives = 214/322 (66%), Gaps = 8/322 (2%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP++L +V +DIV TI R +LPHLL YGPPGTGKTSTI+A+AR++YG
Sbjct: 10 PWVEKYRPENLTEVYGQQDIVSTIRRFVETGKLPHLLFYGPPGTGKTSTIVALAREIYGP 69
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFAST-QSFSFGVKASVKLVLLDEADAMTKDAQFA 160
Y NM+LELNASDDRGIDVVR QI+ FAST Q F+ KL++LDEADAMT AQ +
Sbjct: 70 NYKNMVLELNASDDRGIDVVRNQIKSFASTRQIFTSSSSPQFKLIILDEADAMTSVAQNS 129
Query: 161 LRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDV 220
LRR+IEKYTKN RF ++ N +K+ PAL SRCTRFRF P++ + R+ +VI E +++
Sbjct: 130 LRRIIEKYTKNCRFCILANYSHKLNPALISRCTRFRFHPIDEAAIRSRIDNVIIKEKVNI 189
Query: 221 TEGGLAALVRLCNGDMRKALNILQSTHMA-------SQQITEEAVYLCTGNPLPKDIEQI 273
T L AL++L GDMR++LN+LQ+ A S+ I E +Y C G P P+DIE +
Sbjct: 190 TPDALNALLQLSQGDMRRSLNVLQACKAACGDDDDNSETIDVEMIYNCVGAPHPQDIETV 249
Query: 274 SYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEY 333
+L + + ++ +++ K+ KGLAL+D++ + K+ R+ + L+++EY
Sbjct: 250 LDSILKQDWTTAYMTLNKYKIDKGLALIDLITGFIDILNDYKVKPKTRIEYLKGLSEVEY 309
Query: 334 RLSFGCNDKLQLGSIISTFTQA 355
+S G ND++Q +II QA
Sbjct: 310 GISKGGNDRIQSSAIIGVIKQA 331
>gi|448113261|ref|XP_004202306.1| Piso0_001796 [Millerozyma farinosa CBS 7064]
gi|359465295|emb|CCE89000.1| Piso0_001796 [Millerozyma farinosa CBS 7064]
Length = 331
Score = 309 bits (792), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 156/319 (48%), Positives = 209/319 (65%), Gaps = 9/319 (2%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP SL +V DIV T+ + E +LPHLL YGPPGTGKTSTI A+A+++YG+
Sbjct: 11 PWVEKYRPSSLDEVNGQNDIVSTVRKFVHEGKLPHLLFYGPPGTGKTSTITALAKEIYGS 70
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFAST-QSFSFGVKASVKLVLLDEADAMTKDAQFA 160
Y NM+LELNASDDRGIDVVR QI++FAST Q FS G KL++LDEADAMT AQ +
Sbjct: 71 NYRNMVLELNASDDRGIDVVRNQIKEFASTMQIFSKG----FKLIILDEADAMTSTAQNS 126
Query: 161 LRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDV 220
LRR+IEKYTKNTRF ++ N +K+ PAL SRCTRFRF+P+ V + VI E L +
Sbjct: 127 LRRIIEKYTKNTRFCILANYAHKLNPALVSRCTRFRFSPISQEAVNTTIATVITKEQLKI 186
Query: 221 TEGGLAALVRLCNGDMRKALNILQSTHMASQ----QITEEAVYLCTGNPLPKDIEQISYW 276
+ + +L L GDMRKALN+LQ+ + Q +I + +Y C G PKDIE +
Sbjct: 187 SSEAIESLCALARGDMRKALNVLQACKASLQDDNDEIDTDMIYNCIGAAHPKDIEAVLDS 246
Query: 277 LLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLS 336
+L + + S+ IS K KGLAL+D++ + K ++ R+ ++ L+DIEY +S
Sbjct: 247 ILQDEWTSSYNTISICKREKGLALIDLLSGFVSILNKYELKPATRIEILRGLSDIEYAIS 306
Query: 337 FGCNDKLQLGSIISTFTQA 355
NDK+Q ++I+ A
Sbjct: 307 KAGNDKIQTSAVIAVIKSA 325
>gi|367036204|ref|XP_003667384.1| hypothetical protein MYCTH_2313161 [Myceliophthora thermophila ATCC
42464]
gi|347014657|gb|AEO62139.1| hypothetical protein MYCTH_2313161 [Myceliophthora thermophila ATCC
42464]
Length = 389
Score = 309 bits (791), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 161/335 (48%), Positives = 219/335 (65%), Gaps = 27/335 (8%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP +LADV+ H+DI+ TI++ NRLPHLL YGPPGTGKTSTILA+AR++YGA
Sbjct: 44 PWVEKYRPATLADVSGHQDILATINKFVDSNRLPHLLFYGPPGTGKTSTILALARRIYGA 103
Query: 102 Q-YHNMILELNASDDRGIDVVRQQIQDFAST-QSFSFGVKAS------VKLVLLDEADAM 153
+ M+LELNASDDRGIDVVR+QI+ FAST Q FS A+ KL++LDEADAM
Sbjct: 104 ENMRQMVLELNASDDRGIDVVREQIKTFASTKQIFSMSASATRSGIANFKLIILDEADAM 163
Query: 154 TKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVI 213
T AQ ALRR++EKYT NTRF +I N +K+ PAL SRCTRFRF+PL+ + + VI
Sbjct: 164 TNTAQMALRRIMEKYTANTRFCIIANYSHKLSPALLSRCTRFRFSPLKEQDIRGLIDKVI 223
Query: 214 EAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMAS------------------QQITE 255
E E + + +LVRL GDMR+ALN+LQ+ H +S + IT
Sbjct: 224 EEENVKIMPEATDSLVRLSKGDMRRALNVLQACHASSTPLQPREGPKIAEKDIVRETITT 283
Query: 256 EAVYLCTGNPLPKDIEQISYWLLNESFADS-FKRISEMKMRKGLALVDIVREVTMFVFKI 314
E +Y C P P I++I LL+ S S I+ +K+ +GLAL DI+ ++ V K+
Sbjct: 284 ETIYNCVAAPPPDAIKKILNTLLSTSDVTSCLSTINTLKVAQGLALADIITALSEEVMKL 343
Query: 315 KMPSDVRVRLMNDLADIEYRLSFGCNDKLQLGSII 349
++ V + ++ LA+IE+R+S G N+ +Q +++
Sbjct: 344 EVKPQVMITWLDTLAEIEHRVSSGANEAIQTSAVV 378
>gi|46123299|ref|XP_386203.1| hypothetical protein FG06027.1 [Gibberella zeae PH-1]
Length = 390
Score = 308 bits (790), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 160/336 (47%), Positives = 222/336 (66%), Gaps = 28/336 (8%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP +L DV+ H+DI+ TI++ +NRLPHLLLYGPPGTGKTSTILA+AR++YGA
Sbjct: 43 PWVEKYRPTTLDDVSGHQDILATINKFIEQNRLPHLLLYGPPGTGKTSTILALARRIYGA 102
Query: 102 -QYHNMILELNASDDRGIDVVRQQIQDFAST-QSFSFGVK-------ASVKLVLLDEADA 152
M+LELNASDDRGIDVVR+QI+ FAST Q FS G A KL++LDEADA
Sbjct: 103 ANMRQMVLELNASDDRGIDVVREQIKTFASTKQIFSLGGASRSGNGMAGFKLIILDEADA 162
Query: 153 MTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHV 212
MT AQ ALRR++EKYT NTRF +I N +K+ PAL SRCTRFRF+PL+ + + V
Sbjct: 163 MTSTAQMALRRIMEKYTTNTRFCIIANYSHKLSPALLSRCTRFRFSPLKEGDIRVLVDKV 222
Query: 213 IEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMAS------------------QQIT 254
+E E + V + ALV+L GDMR+ALN+LQ+ H +S + IT
Sbjct: 223 VEEENVQVKGEAIDALVKLSKGDMRRALNVLQACHASSTPLRAKDAPKVPDSEIQRENIT 282
Query: 255 EEAVYLCTGNPLPKDIEQISYWLLNESFADS-FKRISEMKMRKGLALVDIVREVTMFVFK 313
E +Y C P P I++I LL S S I+ +K+++GLAL DI+ ++ + K
Sbjct: 283 TETIYNCIAAPPPDAIKEIVSTLLKTSDVTSCLNTINALKVQRGLALADIITALSEELVK 342
Query: 314 IKMPSDVRVRLMNDLADIEYRLSFGCNDKLQLGSII 349
+++ +V + ++ LA+IE+R++ G ++ +Q G+++
Sbjct: 343 LEVSPEVMITWLDGLANIEHRVASGSSESIQTGAVV 378
>gi|294873159|ref|XP_002766534.1| replication factor C3, putative [Perkinsus marinus ATCC 50983]
gi|239867474|gb|EEQ99251.1| replication factor C3, putative [Perkinsus marinus ATCC 50983]
Length = 354
Score = 308 bits (790), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 163/361 (45%), Positives = 229/361 (63%), Gaps = 15/361 (4%)
Query: 6 TVSLMDFDEDENQNLKPKDNGKNVIVSGTPPDIKASPWVEKYRPQSLADVAAHRDIVDTI 65
T MD DE+ P G + P PWVEKYRP++L D+ AH++I++TI
Sbjct: 3 TAEPMDLDEE-----TPAAGGSVFL-----PPANELPWVEKYRPKTLDDLVAHQEIIETI 52
Query: 66 DRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYG-AQYHNMILELNASDDRGIDVVRQQ 124
R N LPHLLL+GPPGTGKTSTILA AR++Y Q +LELNASD RGIDVVR+
Sbjct: 53 KRFVKMNALPHLLLHGPPGTGKTSTILACARQMYPPGQLRQYVLELNASDARGIDVVREC 112
Query: 125 IQDFASTQS-FSFGVKASV-KLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVN 182
I+ F S++S FS + ++ KLV+LDEAD MT +QFALRRVIE+Y+ N RF LICN +
Sbjct: 113 IKQFVSSRSMFSGSLGTNMPKLVILDEADNMTSVSQFALRRVIEQYSSNARFCLICNYAS 172
Query: 183 KIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNI 242
KIIPALQSRCT+FRFAPL+ R+ +V + EG+ ++E G+ AL+R GDMRK LN
Sbjct: 173 KIIPALQSRCTKFRFAPLKDAEARMRVDYVAKCEGVKISEDGMLALLRTGEGDMRKVLNT 232
Query: 243 LQSTHMA--SQQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLAL 300
LQS ++ S + ++ G P I+++ L + + I E++++ G ++
Sbjct: 233 LQSCTLSYPSHTVDANIIHKVAGLPETSTIDRLEAVLCQKPLREGMMVIEELRVKHGYSV 292
Query: 301 VDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDKLQLGSIISTFTQARSAIV 360
D++RE+ + + MP R L DLA+IEYRLS GC++K+Q +++ +F + R +V
Sbjct: 293 ADLLREIHDRMVTVDMPPRARNLLFRDLAEIEYRLSSGCSEKVQGAALVGSFHEIREMMV 352
Query: 361 A 361
A
Sbjct: 353 A 353
>gi|226290876|gb|EEH46304.1| replication factor C subunit 3 [Paracoccidioides brasiliensis Pb18]
Length = 395
Score = 308 bits (789), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 164/334 (49%), Positives = 213/334 (63%), Gaps = 27/334 (8%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP SL DV+ H DI+ TI+R NRLPHLLLYGPPGTGKTSTILA+AR++YG
Sbjct: 46 PWVEKYRPNSLDDVSGHHDIIGTINRFIDSNRLPHLLLYGPPGTGKTSTILALARRIYGV 105
Query: 102 Q-YHNMILELNASDDRGIDVVRQQIQDFAST-QSFSFGVKA-------SVKLVLLDEADA 152
+ M+LELNASDDRGIDVVR QI+ FAST Q FS A + KL++LDEADA
Sbjct: 106 KNMRQMVLELNASDDRGIDVVRDQIKTFASTKQIFSMAPVAKSESSLGAFKLIILDEADA 165
Query: 153 MTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHV 212
MT AQ ALRR++EKYT N RF +I N +K+ PAL SRCTRFRF+PL+ + + V
Sbjct: 166 MTATAQMALRRIMEKYTANARFCIIANYTHKLSPALLSRCTRFRFSPLKEKDIRALVNQV 225
Query: 213 IEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMAS-----------------QQITE 255
IE E + + + +LV L GDMR+ALN+LQ+ H +S + +++
Sbjct: 226 IEKEQVRIQPEAIDSLVELSKGDMRRALNVLQACHASSIPLPMKNAPKDRPSAEHETVSQ 285
Query: 256 EAVYLCTGNPLPKDIEQISYWLLNESFADS-FKRISEMKMRKGLALVDIVREVTMFVFKI 314
E +Y C P P DI+ I LL S S I +K KGLALVDI+ ++ + +I
Sbjct: 286 ETIYTCIAAPHPSDIKTIITALLTTSDVTSCLNTIQTLKSNKGLALVDILTALSAELQRI 345
Query: 315 KMPSDVRVRLMNDLADIEYRLSFGCNDKLQLGSI 348
++P+ RV M LADIE+RL+ G + +Q G +
Sbjct: 346 EVPAAARVVWMEGLADIEWRLASGGGEMVQTGGL 379
>gi|254567680|ref|XP_002490950.1| Subunit of heteropentameric Replication factor C (RF-C), which is a
DNA binding protein and ATPase t [Komagataella pastoris
GS115]
gi|238030747|emb|CAY68670.1| Subunit of heteropentameric Replication factor C (RF-C), which is a
DNA binding protein and ATPase t [Komagataella pastoris
GS115]
gi|328352517|emb|CCA38916.1| replication factor C subunit 3/5 [Komagataella pastoris CBS 7435]
Length = 332
Score = 308 bits (789), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 156/319 (48%), Positives = 211/319 (66%), Gaps = 9/319 (2%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP SL V D VDT+ + + RLPHLL YGPPGTGKTSTI+A+A+++YG
Sbjct: 13 PWVEKYRPSSLDYVYGQHDTVDTVRKFVQDGRLPHLLFYGPPGTGKTSTIMALAKEIYGK 72
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFAST-QSFSFGVKASVKLVLLDEADAMTKDAQFA 160
Y NM+LELNASDDRGI VVR QI +FAST Q FS G KL++LDEADAMT AQ A
Sbjct: 73 NYRNMVLELNASDDRGISVVRDQIVNFASTRQIFSNG----FKLIILDEADAMTNVAQNA 128
Query: 161 LRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDV 220
LRRVIEK+TKNTRF ++ N +K+ PAL SRCTRFRF P+ + R+ VI+ EG+++
Sbjct: 129 LRRVIEKFTKNTRFCVLANYAHKLNPALLSRCTRFRFQPISQEAIQLRINDVIKQEGINI 188
Query: 221 TEGGLAALVRLCNGDMRKALNILQSTHMA----SQQITEEAVYLCTGNPLPKDIEQISYW 276
+ L +L++L GDMRKALN+LQ+ SQ IT +Y C G P P+DIE +
Sbjct: 189 DDDALQSLLKLSKGDMRKALNVLQACFTGLDSPSQAITSPMIYECVGAPDPQDIEHVLDT 248
Query: 277 LLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLS 336
++ E++ +F ++ +K+ KG AL+D+V + ++ R+ ++ LADIEY +S
Sbjct: 249 IIQENWEAAFTIMNRLKLEKGYALIDLVNGFVDILGGYQLEKMCRLTILKGLADIEYAIS 308
Query: 337 FGCNDKLQLGSIISTFTQA 355
G ND +Q ++I +
Sbjct: 309 RGGNDAIQNTAVIGVIKKG 327
>gi|448115886|ref|XP_004202928.1| Piso0_001796 [Millerozyma farinosa CBS 7064]
gi|359383796|emb|CCE79712.1| Piso0_001796 [Millerozyma farinosa CBS 7064]
Length = 331
Score = 308 bits (789), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 155/319 (48%), Positives = 209/319 (65%), Gaps = 9/319 (2%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP SL +V DIV T+ + E +LPHLL YGPPGTGKTSTI+A+A+++YG+
Sbjct: 11 PWVEKYRPSSLDEVNGQNDIVSTVRKFVHEGKLPHLLFYGPPGTGKTSTIIALAKEIYGS 70
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFAST-QSFSFGVKASVKLVLLDEADAMTKDAQFA 160
Y NM+LELNASDDRGIDVVR QI++FAST Q FS G KL++LDEADAMT AQ +
Sbjct: 71 NYRNMVLELNASDDRGIDVVRNQIKEFASTMQIFSKG----FKLIILDEADAMTSTAQNS 126
Query: 161 LRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDV 220
LRR+IEKYTKNTRF ++ N +K+ PAL SRCTRFRF+P+ V + VI E L +
Sbjct: 127 LRRIIEKYTKNTRFCILANYAHKLNPALVSRCTRFRFSPISQEAVNTTIATVITKEKLKI 186
Query: 221 TEGGLAALVRLCNGDMRKALNILQSTHMASQ----QITEEAVYLCTGNPLPKDIEQISYW 276
+ + +L L GDMRKALN+LQ+ + Q +I +Y C G PKDIE +
Sbjct: 187 SSDAIESLCTLARGDMRKALNVLQACKASLQDDNDEIDTNMIYNCIGAAHPKDIEAVLDS 246
Query: 277 LLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLS 336
+L + + S+ IS K KGLAL+D++ + K ++ R+ ++ L+DIEY +S
Sbjct: 247 ILQDEWTSSYNTISICKREKGLALIDLLSGFVSILNKYELKPATRIEILRGLSDIEYAIS 306
Query: 337 FGCNDKLQLGSIISTFTQA 355
+DK+Q ++I+ A
Sbjct: 307 KAGSDKIQTSAVIAVIKSA 325
>gi|449301028|gb|EMC97039.1| hypothetical protein BAUCODRAFT_147217 [Baudoinia compniacensis
UAMH 10762]
Length = 397
Score = 308 bits (788), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 162/336 (48%), Positives = 214/336 (63%), Gaps = 28/336 (8%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP SL+DV+ H DI+ TI++ NRLPHLLLYGPPGTGKTST+LA+AR++YG
Sbjct: 47 PWVEKYRPASLSDVSGHHDILATINKFVDSNRLPHLLLYGPPGTGKTSTVLALARRIYGN 106
Query: 102 Q-YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGV--------KASVKLVLLDEADA 152
+ M+LELNASDDRGI+VVR+QI+ F+ST+ G A+ KL++LDEADA
Sbjct: 107 RNMRQMVLELNASDDRGIEVVREQIKTFSSTKQIFAGSFDKTQQDSIANFKLIILDEADA 166
Query: 153 MTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHV 212
MT AQ ALRR++EKYT NTRF +I N +K+ PAL SRCTRFRF+PL+ + + V
Sbjct: 167 MTSTAQMALRRIMEKYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKDADIRHLVDKV 226
Query: 213 IEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQ------------------IT 254
I EG+++ + +LV L GDMR+ALN+LQ+ H +S IT
Sbjct: 227 IVEEGVNIAPDAVDSLVSLSKGDMRRALNVLQACHASSTPLHVPGQPVKESKDVKRDLIT 286
Query: 255 EEAVYLCTGNPLPKDIEQISYWLLNESFADS-FKRISEMKMRKGLALVDIVREVTMFVFK 313
+E +Y C P P DI I LL S S I+ +K KGLAL DI+ + + +
Sbjct: 287 QETIYDCIAAPHPADINTILQTLLTTSNVGSCLSTINALKRAKGLALADILTAMGEQLAE 346
Query: 314 IKMPSDVRVRLMNDLADIEYRLSFGCNDKLQLGSII 349
I +P+ RV + LADIEYRLS G ++ +Q G +I
Sbjct: 347 IDVPAQTRVSWLEGLADIEYRLSGGGSETVQTGGLI 382
>gi|406863129|gb|EKD16177.1| activator 1 subunit 3 [Marssonina brunnea f. sp. 'multigermtubi'
MB_m1]
Length = 395
Score = 308 bits (788), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 164/361 (45%), Positives = 224/361 (62%), Gaps = 31/361 (8%)
Query: 16 ENQNLKPKDNGKNVIVSGTPPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLP 75
+N N K K + N+ V + PWVEKYRP +L DV+ H+DI+ TI + NRLP
Sbjct: 25 DNTNSKGKRSAANLPVEAE----DSLPWVEKYRPDTLEDVSGHQDILATITKFVDTNRLP 80
Query: 76 HLLLYGPPGTGKTSTILAVARKLYGAQ-YHNMILELNASDDRGIDVVRQQIQDFASTQSF 134
HLLLYGPPGTGKTSTILA+AR++YG++ M+LELNASDDRGIDVVR+QI+ FAST+
Sbjct: 81 HLLLYGPPGTGKTSTILALARQIYGSKNMRQMVLELNASDDRGIDVVREQIKTFASTKQI 140
Query: 135 SFGVKASV-------KLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPA 187
K S KL++LDEADAMT AQ ALRR++EKYT NTRF +I N +K+ PA
Sbjct: 141 FTMNKTSTSASMPTYKLIILDEADAMTSTAQMALRRIMEKYTANTRFCIIANYTHKLSPA 200
Query: 188 LQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTH 247
L SRCTRFRF+PL+ + + VI E + + E ALV+L GDMR+ALN+LQ+ H
Sbjct: 201 LLSRCTRFRFSPLKEADIRVLVDKVITEENVQINESATDALVKLSKGDMRRALNVLQACH 260
Query: 248 MASQQ------------------ITEEAVYLCTGNPLPKDIEQISYWLL-NESFADSFKR 288
+S ITE +Y C +P P+DI +I LL
Sbjct: 261 ASSTPLHIKGTPKIAEKDIKRDLITETTIYECIASPHPEDISKILNTLLKTPDVTTCLTM 320
Query: 289 ISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDKLQLGSI 348
I+ +K +GLAL DI+ ++ + K+ +P+ V + ++ LA++EYRLS G + +Q G++
Sbjct: 321 INALKASQGLALADIITALSEELTKLDVPAPVMITWLDGLAEVEYRLSGGGGEVVQTGAV 380
Query: 349 I 349
+
Sbjct: 381 V 381
>gi|453083984|gb|EMF12029.1| replication factor C subunit 3 [Mycosphaerella populorum SO2202]
Length = 399
Score = 307 bits (787), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 166/363 (45%), Positives = 222/363 (61%), Gaps = 34/363 (9%)
Query: 17 NQNLKPKDNGKNVIVSGTPPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPH 76
N N K K + N+ V PWVEKYRP +LADV+ H+DI+ TI++ NRLPH
Sbjct: 27 NTNSKGKRSAANLPVEAE----DTLPWVEKYRPNALADVSGHQDILATINKFVDSNRLPH 82
Query: 77 LLLYGPPGTGKTSTILAVARKLYGAQ-YHNMILELNASDDRGIDVVRQQIQDFASTQSFS 135
LLLYGPPGTGKTST+LA+AR++YG + M+LELNASDDRGIDVVR+QI+ F+ST+
Sbjct: 83 LLLYGPPGTGKTSTVLALARRIYGNKNMRQMVLELNASDDRGIDVVREQIKTFSSTKQIF 142
Query: 136 FGV----------KASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKII 185
G A KL++LDEADAMT AQ ALRR++EKYT NTRF +I N +K+
Sbjct: 143 AGSFDKTRRDDSSIAHYKLIILDEADAMTSTAQMALRRIMEKYTANTRFCIIANYTHKLS 202
Query: 186 PALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQS 245
PAL SRCTRFRF+PL+ + + + VI E +++ +LV L GDMR+ALN+LQ+
Sbjct: 203 PALLSRCTRFRFSPLKDADIRQLIDRVITEENVNIEPTAADSLVTLSKGDMRRALNVLQA 262
Query: 246 THMASQQ------------------ITEEAVYLCTGNPLPKDIEQISYWLLN-ESFADSF 286
H +S IT+E +Y C P P DI+ I LLN ++
Sbjct: 263 CHASSTPLHIPGEPVVDDKAIPRDLITQETIYDCIAAPHPADIQTIMKTLLNTQNVGSCM 322
Query: 287 KRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDKLQLG 346
I+ +K KGLAL DI+ + + +++ + RV M LADIEYRLS G ++ +Q G
Sbjct: 323 NTINTLKKAKGLALADILTALGEQLNEVEASAQTRVTWMEGLADIEYRLSGGGSESIQTG 382
Query: 347 SII 349
+I
Sbjct: 383 GLI 385
>gi|302653321|ref|XP_003018488.1| hypothetical protein TRV_07502 [Trichophyton verrucosum HKI 0517]
gi|291182138|gb|EFE37843.1| hypothetical protein TRV_07502 [Trichophyton verrucosum HKI 0517]
Length = 416
Score = 307 bits (787), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 164/355 (46%), Positives = 220/355 (61%), Gaps = 44/355 (12%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP +L DV+ H+DI+ TI+R NRLPHLLLYGPPGTGKTSTILA+AR++YG+
Sbjct: 46 PWVEKYRPDTLDDVSGHQDIIATINRFVDSNRLPHLLLYGPPGTGKTSTILALARRIYGS 105
Query: 102 Q-YHNMILELNASDDRGIDVVRQQIQDFAST--------------------QSFSFGVKA 140
+ M+LELNASDDRGIDVVR+QI+ FAST Q FS +
Sbjct: 106 KNMRQMVLELNASDDRGIDVVREQIKTFASTSLVYKGRSEAESLTAIVGTKQIFSTAPSS 165
Query: 141 -----SVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRF 195
+ KL++LDEADAMT AQ ALRR++EKYT NTRF +I N +K+ PAL SRCTRF
Sbjct: 166 GSGLGAFKLIILDEADAMTSAAQMALRRIMEKYTANTRFCIIANYTHKLSPALLSRCTRF 225
Query: 196 RFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMAS----- 250
RF+PL+ + + VIE E + + + +LV+L GDMR+ALN+LQ+ H +S
Sbjct: 226 RFSPLKEKDIRRLVDTVIETEEVQIQPDAIDSLVKLSKGDMRRALNVLQACHASSMPLPS 285
Query: 251 ------------QQITEEAVYLCTGNPLPKDIEQISYWLLNESFADS-FKRISEMKMRKG 297
+ ITEE +Y C P P DI+ I LL+ S S + +K KG
Sbjct: 286 KNDDANEQQQERETITEETIYTCIAAPHPADIKIILETLLSTSDVTSCLNTVQTLKANKG 345
Query: 298 LALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDKLQLGSIISTF 352
LAL DI+ ++ + +++P+ VRV + LAD+E+RLS G ++ +Q G +I
Sbjct: 346 LALADIISALSTELQSLEVPAQVRVSWIEGLADVEWRLSGGGSEVIQTGGMIGVI 400
>gi|116205575|ref|XP_001228598.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
gi|88176799|gb|EAQ84267.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
Length = 389
Score = 307 bits (786), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 161/335 (48%), Positives = 220/335 (65%), Gaps = 27/335 (8%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP SLADV+ H+DI+ TI++ NRLPHLLLYGPPGTGKTSTILA+AR++YG+
Sbjct: 44 PWVEKYRPVSLADVSGHQDILATINKFVDSNRLPHLLLYGPPGTGKTSTILALARRIYGS 103
Query: 102 Q-YHNMILELNASDDRGIDVVRQQIQDFAST-QSFSFGVKAS------VKLVLLDEADAM 153
+ M+LELNASDDRGIDVVR+QI+ FAST Q F+ G AS KL++LDEADAM
Sbjct: 104 ENMRQMVLELNASDDRGIDVVREQIKTFASTKQIFTMGASASRTGIAGFKLIILDEADAM 163
Query: 154 TKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVI 213
T AQ ALRR++EKYT NTRF +I N +K+ PAL SRCTRFRF+PL+ + + VI
Sbjct: 164 TNTAQMALRRIMEKYTANTRFCIIANYSHKLSPALLSRCTRFRFSPLKEQDIRVLVDKVI 223
Query: 214 EAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMAS------------------QQITE 255
E E + + ALVRL GDMR+ALN+LQ+ H +S + IT
Sbjct: 224 EEETVKIIPEATEALVRLSKGDMRRALNVLQACHASSTPLQPRDAPKIPEKDIVRETITT 283
Query: 256 EAVYLCTGNPLPKDIEQISYWLLNESFADS-FKRISEMKMRKGLALVDIVREVTMFVFKI 314
+ +Y C P P I++I LL+ S S I+ +K+ +GLAL DI+ ++ + K+
Sbjct: 284 QTIYNCVAAPPPDAIKKILGTLLSTSDVTSCLSTINTLKVAQGLALADIITALSDELTKL 343
Query: 315 KMPSDVRVRLMNDLADIEYRLSFGCNDKLQLGSII 349
++ V + + LA++E+R+S G N+ +Q +++
Sbjct: 344 EVKPQVMITWLEKLAEVEHRVSSGSNEAIQTSAVV 378
>gi|336258765|ref|XP_003344190.1| hypothetical protein SMAC_08123 [Sordaria macrospora k-hell]
gi|380095124|emb|CCC07626.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 389
Score = 307 bits (786), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 160/338 (47%), Positives = 219/338 (64%), Gaps = 27/338 (7%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYG- 100
PWVEKYRP SLADV+ H+DI+ TI++ NRLPHLLLYGPPGTGKTSTILA+AR++YG
Sbjct: 44 PWVEKYRPVSLADVSGHQDILATINKFVDSNRLPHLLLYGPPGTGKTSTILALARRIYGT 103
Query: 101 AQYHNMILELNASDDRGIDVVRQQIQDFAST-QSFSFGVKAS------VKLVLLDEADAM 153
A M+LELNASDDRGIDVVR+QI+ FAST Q F+ G AS KL++LDEADAM
Sbjct: 104 ANMRQMVLELNASDDRGIDVVREQIKTFASTKQIFTLGSSASRSGLAGFKLIILDEADAM 163
Query: 154 TKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVI 213
T AQ ALRR++EKYT NTRF +I N +K+ PAL SRCTRFRF+PL+ + + VI
Sbjct: 164 TSTAQMALRRIMEKYTANTRFCIIANYSHKLSPALLSRCTRFRFSPLKEKDIRVLVDKVI 223
Query: 214 EAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMAS------------------QQITE 255
E E + + ALV+L GDMR+ALN+LQ+ H +S + IT
Sbjct: 224 EEENVQIMPDATDALVKLSKGDMRRALNVLQACHASSTPLQPKDGPKVAEKDIVRETITI 283
Query: 256 EAVYLCTGNPLPKDIEQISYWLLNES-FADSFKRISEMKMRKGLALVDIVREVTMFVFKI 314
+ +Y C P P I++I LL+ S I+ +K+ +GLAL DI+ ++ + K+
Sbjct: 284 QTIYNCVAAPPPDAIKKILSTLLSTSDVTTCLSTINTLKISQGLALADIITALSEEIVKL 343
Query: 315 KMPSDVRVRLMNDLADIEYRLSFGCNDKLQLGSIISTF 352
++ V + ++ LA+IE+R++ G + +Q G+++
Sbjct: 344 EVKPQVMITWLDALANIEHRVASGAGEMIQTGAVVGAI 381
>gi|156062848|ref|XP_001597346.1| hypothetical protein SS1G_01540 [Sclerotinia sclerotiorum 1980]
gi|154696876|gb|EDN96614.1| hypothetical protein SS1G_01540 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 390
Score = 306 bits (785), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 168/369 (45%), Positives = 228/369 (61%), Gaps = 30/369 (8%)
Query: 12 FDEDENQNLKPKDNGKNVIVSGTPPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSE 71
F+ D N N K K + N+ V + PWVEKYRP +L DV+ H+DI+ TI++
Sbjct: 21 FNSD-NTNSKGKRSAANLPVEAE----DSLPWVEKYRPDTLEDVSGHQDILATINKFVDT 75
Query: 72 NRLPHLLLYGPPGTGKTSTILAVARKLYGAQ-YHNMILELNASDDRGIDVVRQQIQDFAS 130
NRLPHLL YGPPGTGKTSTILA+AR++YG + M+LELNASDDRGI+VVR+QI+ FAS
Sbjct: 76 NRLPHLLFYGPPGTGKTSTILALARRIYGPKNMRQMVLELNASDDRGIEVVREQIKTFAS 135
Query: 131 T-QSFSFGVK----ASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKII 185
T Q FS + KL++LDEADAMT AQ ALRRV+EKYT NTRF +I N +K+
Sbjct: 136 TKQIFSMNSATVSPGAYKLIILDEADAMTSTAQMALRRVMEKYTANTRFCVIANYTHKLS 195
Query: 186 PALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQS 245
PAL SRCTRFRF+PL+ + + VI E + + ALVRL GDMR+ALN+LQ+
Sbjct: 196 PALLSRCTRFRFSPLKESDIRVLVDKVIMEENVQINAEATDALVRLSKGDMRRALNVLQA 255
Query: 246 THMASQQ------------------ITEEAVYLCTGNPLPKDIEQISYWLLNESFADS-F 286
H +S ITE +Y C +P P DI +I +L S S
Sbjct: 256 CHASSTPIHIKGTPKMEEKDIVRDLITETTIYDCIASPHPADISKIMNTILKTSDVKSCL 315
Query: 287 KRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDKLQLG 346
+ I+ +K +GLAL DI+ ++ + K+ +P+ V + + LA++EYRLS G ++ +Q G
Sbjct: 316 QMINAIKSTQGLALADIITALSEELIKVDVPASVMITWLQGLAEVEYRLSGGGSEVIQTG 375
Query: 347 SIISTFTQA 355
+++ Q
Sbjct: 376 AVVGVVRQG 384
>gi|347832701|emb|CCD48398.1| similar to replication factor C subunit 3 [Botryotinia fuckeliana]
Length = 390
Score = 306 bits (785), Expect = 9e-81, Method: Compositional matrix adjust.
Identities = 159/340 (46%), Positives = 218/340 (64%), Gaps = 27/340 (7%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP +L DV+ H+DI+ TI++ NRLPHLL YGPPGTGKTSTILA+AR++YG+
Sbjct: 47 PWVEKYRPDTLEDVSGHQDILATINKFVDTNRLPHLLFYGPPGTGKTSTILALARRIYGS 106
Query: 102 Q-YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKAS------VKLVLLDEADAMT 154
+ M+LELNASDDRGIDVVR+QI+ FAST+ F K+S KL++LDEADAMT
Sbjct: 107 KNMRQMVLELNASDDRGIDVVREQIKTFASTKQI-FASKSSSTSPGAYKLIILDEADAMT 165
Query: 155 KDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIE 214
AQ ALRRV+EKYT NTRF +I N +K+ PAL SRCTRFRF+PL+ + + VI
Sbjct: 166 STAQMALRRVMEKYTANTRFCVIANYTHKLSPALLSRCTRFRFSPLKEADIRVLVDKVIA 225
Query: 215 AEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQ------------------ITEE 256
E + + ALVRL GDMR+ALN+LQ+ H +S ITE
Sbjct: 226 EENVQINAEATDALVRLSKGDMRRALNVLQACHASSTPIHIQGTPKLEEKDIVRDLITET 285
Query: 257 AVYLCTGNPLPKDIEQISYWLLNESFADS-FKRISEMKMRKGLALVDIVREVTMFVFKIK 315
+Y C +P P DI +I +L + S + I+ +K +GLAL DI+ ++ + K+
Sbjct: 286 TIYDCIASPHPADISKIMNTILKTTDVKSCLQMINAVKSTQGLALADIITALSEELTKLD 345
Query: 316 MPSDVRVRLMNDLADIEYRLSFGCNDKLQLGSIISTFTQA 355
+P+ V + + LA++EYRLS G ++ +Q G+++ +
Sbjct: 346 VPASVMITWLQGLAEVEYRLSGGGSEVIQTGALVGVIREG 385
>gi|302501939|ref|XP_003012961.1| hypothetical protein ARB_00844 [Arthroderma benhamiae CBS 112371]
gi|291176522|gb|EFE32321.1| hypothetical protein ARB_00844 [Arthroderma benhamiae CBS 112371]
Length = 417
Score = 306 bits (784), Expect = 9e-81, Method: Compositional matrix adjust.
Identities = 164/356 (46%), Positives = 220/356 (61%), Gaps = 45/356 (12%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP +L DV+ H+DI+ TI+R NRLPHLLLYGPPGTGKTSTILA+AR++YG+
Sbjct: 46 PWVEKYRPDTLDDVSGHQDIIATINRFVDSNRLPHLLLYGPPGTGKTSTILALARRIYGS 105
Query: 102 Q-YHNMILELNASDDRGIDVVRQQIQDFAST---------------------QSFSFGVK 139
+ M+LELNASDDRGIDVVR+QI+ FAST Q FS
Sbjct: 106 KNMRQMVLELNASDDRGIDVVREQIKTFASTSLVYKGRSEAESLTAIIVGTKQIFSTAPS 165
Query: 140 A-----SVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTR 194
+ + KL++LDEADAMT AQ ALRR++EKYT NTRF +I N +K+ PAL SRCTR
Sbjct: 166 SGSGLGAFKLIILDEADAMTSAAQMALRRIMEKYTANTRFCIIANYTHKLSPALLSRCTR 225
Query: 195 FRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMAS---- 250
FRF+PL+ + + VIE E + + + +LV+L GDMR+ALN+LQ+ H +S
Sbjct: 226 FRFSPLKEKDIRRLVDTVIEKEEVQIQPDAIDSLVKLSKGDMRRALNVLQACHASSMPLP 285
Query: 251 -------------QQITEEAVYLCTGNPLPKDIEQISYWLLNESFADS-FKRISEMKMRK 296
+ ITEE +Y C P P DI+ I LL+ S S + +K K
Sbjct: 286 SKNGDANEQQQERETITEETIYTCIAAPHPADIKIILETLLSTSDVTSCLNTVQTLKANK 345
Query: 297 GLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDKLQLGSIISTF 352
GLAL DI+ ++ + +++P+ VRV + LAD+E+RLS G ++ +Q G +I
Sbjct: 346 GLALADIISALSTELQSLEVPAQVRVSWIEGLADVEWRLSGGGSEVIQTGGMIGVI 401
>gi|154313201|ref|XP_001555927.1| hypothetical protein BC1G_05602 [Botryotinia fuckeliana B05.10]
Length = 390
Score = 306 bits (784), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 159/340 (46%), Positives = 218/340 (64%), Gaps = 27/340 (7%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP +L DV+ H+DI+ TI++ NRLPHLL YGPPGTGKTSTILA+AR++YG+
Sbjct: 47 PWVEKYRPDTLEDVSGHQDILATINKFVDTNRLPHLLFYGPPGTGKTSTILALARRIYGS 106
Query: 102 Q-YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKAS------VKLVLLDEADAMT 154
+ M+LELNASDDRGIDVVR+QI+ FAST+ F K+S KL++LDEADAMT
Sbjct: 107 KNMRQMVLELNASDDRGIDVVREQIKTFASTKQI-FASKSSSTSPGAYKLIILDEADAMT 165
Query: 155 KDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIE 214
AQ ALRRV+EKYT NTRF +I N +K+ PAL SRCTRFRF+PL+ + + VI
Sbjct: 166 STAQMALRRVMEKYTANTRFCVIANYTHKLSPALLSRCTRFRFSPLKEADIRVLVDKVIA 225
Query: 215 AEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQ------------------ITEE 256
E + + ALVRL GDMR+ALN+LQ+ H +S ITE
Sbjct: 226 EENVQINAEATDALVRLSKGDMRRALNVLQACHASSTPIHIQGTPKLEEKDIVRDLITET 285
Query: 257 AVYLCTGNPLPKDIEQISYWLLNESFADS-FKRISEMKMRKGLALVDIVREVTMFVFKIK 315
+Y C +P P DI +I +L + S + I+ +K +GLAL DI+ ++ + K+
Sbjct: 286 TIYDCIASPHPADISKIMNTILKTTDVKSCLQMINAVKSTQGLALADIITALSEELTKLD 345
Query: 316 MPSDVRVRLMNDLADIEYRLSFGCNDKLQLGSIISTFTQA 355
+P+ V + + LA++EYRLS G ++ +Q G+++ +
Sbjct: 346 VPASVMITWLQGLAEVEYRLSGGGSEVIQTGALVGVIREG 385
>gi|119499175|ref|XP_001266345.1| DNA replication factor C subunit Rfc3, putative [Neosartorya
fischeri NRRL 181]
gi|119414509|gb|EAW24448.1| DNA replication factor C subunit Rfc3, putative [Neosartorya
fischeri NRRL 181]
Length = 396
Score = 306 bits (784), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 158/336 (47%), Positives = 217/336 (64%), Gaps = 28/336 (8%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP +L DV+ H+DI+ TI++ NRLPHLLLYGPPGTGKTSTILA+AR++YG+
Sbjct: 46 PWVEKYRPNTLDDVSGHQDILATINKFIEANRLPHLLLYGPPGTGKTSTILALARRIYGS 105
Query: 102 Q-YHNMILELNASDDRGIDVVRQQIQDFASTQSF---------SFGVKASVKLVLLDEAD 151
M+LELNASDDRGIDVVR+QI+ FAST+ S AS KL++LDEAD
Sbjct: 106 NNMRQMVLELNASDDRGIDVVREQIKTFASTKQIFSMAAPSASSGSSLASFKLIILDEAD 165
Query: 152 AMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKH 211
AMT AQ ALRR++E+YT NTRF +I N +K+ PAL SRCTRFRF+PL+ + +
Sbjct: 166 AMTSTAQMALRRIMERYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKEQDIRSLVDQ 225
Query: 212 VIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQ-----------------IT 254
VIE E + + +++LVRL GDMR+ALN+LQ+ H +S+ IT
Sbjct: 226 VIEKEQIHIQPEAVSSLVRLSKGDMRRALNVLQACHASSKPLPMKNATKDEPQSEPEIIT 285
Query: 255 EEAVYLCTGNPLPKDIEQISYWLLNES-FADSFKRISEMKMRKGLALVDIVREVTMFVFK 313
E +Y C P P DI++I LL+ S ++ +K KGLAL DI+ + + +
Sbjct: 286 NETIYDCIAAPHPSDIQEIMTTLLSTSDITSCLNTVNTLKANKGLALADILSALAEQLQQ 345
Query: 314 IKMPSDVRVRLMNDLADIEYRLSFGCNDKLQLGSII 349
+++P R+ + LAD+E+RLS G ++ +Q G ++
Sbjct: 346 LEVPPQTRITWLEGLADVEFRLSAGGSETMQTGGMV 381
>gi|225679164|gb|EEH17448.1| replication factor C subunit 3 [Paracoccidioides brasiliensis Pb03]
Length = 391
Score = 306 bits (784), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 163/330 (49%), Positives = 211/330 (63%), Gaps = 27/330 (8%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP SL DV+ H DI+ TI+R NRLPHLLLYGPPGTGKTSTILA+AR++YG
Sbjct: 46 PWVEKYRPNSLDDVSGHHDIIGTINRFIDSNRLPHLLLYGPPGTGKTSTILALARRIYGV 105
Query: 102 Q-YHNMILELNASDDRGIDVVRQQIQDFAST-QSFSFGVKA-------SVKLVLLDEADA 152
+ M+LELNASDDRGIDVVR QI+ FAST Q FS A + KL++LDEADA
Sbjct: 106 KNMRQMVLELNASDDRGIDVVRDQIKTFASTKQIFSMAPVAKSESSLGAFKLIILDEADA 165
Query: 153 MTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHV 212
MT AQ ALRR++EKYT N RF +I N +K+ PAL SRCTRFRF+PL+ + + V
Sbjct: 166 MTATAQMALRRIMEKYTANARFCIIANYTHKLSPALLSRCTRFRFSPLKEKDIRALVNQV 225
Query: 213 IEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMAS-----------------QQITE 255
IE E + + + +LV L GDMR+ALN+LQ+ H +S + +++
Sbjct: 226 IEKEQVRIQPEAIDSLVELSKGDMRRALNVLQACHASSIPLPMKNAPKDRPSAEHETVSQ 285
Query: 256 EAVYLCTGNPLPKDIEQISYWLLNESFADS-FKRISEMKMRKGLALVDIVREVTMFVFKI 314
E +Y C P P DI+ I LL S S I +K KGLALVDI+ ++ + +I
Sbjct: 286 ETIYTCIAAPHPSDIKTIITALLTTSDVTSCLNTIQTLKSNKGLALVDILTALSAELQRI 345
Query: 315 KMPSDVRVRLMNDLADIEYRLSFGCNDKLQ 344
++P+ RV M LADIE+RL+ G + +Q
Sbjct: 346 EVPAAARVVWMEGLADIEWRLASGGGEMVQ 375
>gi|365982341|ref|XP_003668004.1| hypothetical protein NDAI_0A06060 [Naumovozyma dairenensis CBS 421]
gi|343766770|emb|CCD22761.1| hypothetical protein NDAI_0A06060 [Naumovozyma dairenensis CBS 421]
Length = 338
Score = 306 bits (783), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 151/322 (46%), Positives = 223/322 (69%), Gaps = 15/322 (4%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP+SL DV ++V T+ + E +LPHLL YGPPGTGKTSTI+A+AR+++G
Sbjct: 15 PWVEKYRPESLDDVYGQTEVVTTVRKFLEEGKLPHLLFYGPPGTGKTSTIVALAREIFGK 74
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFAST-QSFSFGVKASVKLVLLDEADAMTKDAQFA 160
Y NM+LELNASDDRGI+VVR QI+DFAST Q FS G KL++LDEADAMT AQ A
Sbjct: 75 NYSNMVLELNASDDRGIEVVRNQIKDFASTRQIFSKG----FKLIILDEADAMTNAAQNA 130
Query: 161 LRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDV 220
LRR+IEKYTKNTRF ++ N +K+ PAL SRCTRFRF PL + +R+ +V+ E + +
Sbjct: 131 LRRIIEKYTKNTRFCILANYSHKLTPALLSRCTRFRFQPLPRDAIEKRISNVLIHENIKI 190
Query: 221 TEGGLAALVRLCNGDMRKALNILQSTHM-----ASQQITEEAVYLCTGNPLPKDIEQISY 275
++ AL+ L GDMR+ LN+LQ++ A+++I + +Y C G P P D++ I
Sbjct: 191 SDDAKDALITLSQGDMRRVLNVLQASKATLDDPANEEIHADVIYECCGAPRPADLKTILK 250
Query: 276 WLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDV-RVRLMNDLADIEYR 334
+L + ++ ++ +++++ KGLAL+D++ + + ++ +++ R+ L++ L DIEY
Sbjct: 251 SILEDDWSSAYYTLTKLRSTKGLALIDLIEGIIKLLEDYELKNELTRISLLSKLGDIEYS 310
Query: 335 LSFGCNDKLQ----LGSIISTF 352
+S G NDK+Q +G+I ++F
Sbjct: 311 ISKGGNDKIQSSAVIGAIKTSF 332
>gi|451854539|gb|EMD67832.1| hypothetical protein COCSADRAFT_112005 [Cochliobolus sativus
ND90Pr]
Length = 394
Score = 306 bits (783), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 164/337 (48%), Positives = 219/337 (64%), Gaps = 29/337 (8%)
Query: 42 PW--VEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLY 99
PW VEKYRP SL DV H+DI+ TI++ NRLPHLLLYGPPGTGKTST+LA+AR++Y
Sbjct: 43 PWYVVEKYRPASLDDVEGHKDIIATINKFVDSNRLPHLLLYGPPGTGKTSTVLALARRIY 102
Query: 100 GAQ-YHNMILELNASDDRGIDVVRQQIQDFAST-QSFSFGVK------ASVKLVLLDEAD 151
G + M+LELNASDDRGI+VVR+QI+ F+ST Q FS K A+ KL++LDEAD
Sbjct: 103 GNKNMRQMVLELNASDDRGIEVVREQIKTFSSTKQIFSAAPKTGDSSLATFKLIILDEAD 162
Query: 152 AMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKH 211
AMT AQ ALRR++EKYT NTRF +I N +K+ PAL SRCTRFRF+PL+ + +
Sbjct: 163 AMTSTAQMALRRIMEKYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKDQDIRHLVDK 222
Query: 212 VIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMAS------------------QQI 253
VIE E +++T+ +LV L GDMR+ALN+LQ+ H +S QI
Sbjct: 223 VIEEEKVNITQDATDSLVTLSKGDMRRALNVLQACHASSTPLQPPGKPAVDPSSIVRDQI 282
Query: 254 TEEAVYLCTGNPLPKDIEQISYWLLNES-FADSFKRISEMKMRKGLALVDIVREVTMFVF 312
T+ +Y C P P DI+ I LL+++ + + I+ +K KGLAL DI+ ++ +
Sbjct: 283 TQTTIYDCIAAPHPSDIKYIIETLLSKNDMTECLRTINNLKTLKGLALADILTAISEELV 342
Query: 313 KIKMPSDVRVRLMNDLADIEYRLSFGCNDKLQLGSII 349
+P V V M+ LADIEYRLS G ++ +Q G+ I
Sbjct: 343 ANDVPPQVMVTWMSGLADIEYRLSGGGSEAIQTGAAI 379
>gi|156841917|ref|XP_001644329.1| hypothetical protein Kpol_1066p38 [Vanderwaltozyma polyspora DSM
70294]
gi|156114969|gb|EDO16471.1| hypothetical protein Kpol_1066p38 [Vanderwaltozyma polyspora DSM
70294]
Length = 336
Score = 306 bits (783), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 153/314 (48%), Positives = 220/314 (70%), Gaps = 9/314 (2%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP SL +V +IV+T+ + E +LPHLL YGPPGTGKTSTI+A+A+++YG
Sbjct: 13 PWVEKYRPTSLDEVYGQNEIVNTVRKFVEEGKLPHLLFYGPPGTGKTSTIIALAKEIYGK 72
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFAST-QSFSFGVKASVKLVLLDEADAMTKDAQFA 160
YHNM+LELNASDDRGIDVVR Q++DFAST Q FS G KL++LDEADAMT AQ +
Sbjct: 73 NYHNMVLELNASDDRGIDVVRNQVKDFASTRQIFSKG----FKLIILDEADAMTNAAQNS 128
Query: 161 LRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDV 220
LRR+IEKYTKNTRF ++ N K+ PAL SRCTRFRF P+ P + +R+ +VI E + +
Sbjct: 129 LRRIIEKYTKNTRFCILANYAYKLTPALLSRCTRFRFQPIGPAAIEQRMNNVIIKENIKI 188
Query: 221 TEGGLAALVRLCNGDMRKALNILQSTHMA---SQQITEEAVYLCTGNPLPKDIEQISYWL 277
+ AL+++ GDMR+ LN+LQ++ A +++ITEE +Y C G P D+++I +
Sbjct: 189 DDAAKKALLKVSKGDMRRVLNVLQASKAAVEENEEITEELIYDCCGMCRPGDVKKILKSI 248
Query: 278 LNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPS-DVRVRLMNDLADIEYRLS 336
L E F ++ ++++ KG+A VDI+ E+ + + + ++ + + R+ ++ L+DIEY +S
Sbjct: 249 LEEDFTSAYYTMNKICQEKGVASVDIIEEIVLLLEEYELQNEETRIEMLTKLSDIEYAIS 308
Query: 337 FGCNDKLQLGSIIS 350
G N K+ +IIS
Sbjct: 309 KGGNTKVVHSAIIS 322
>gi|367014065|ref|XP_003681532.1| hypothetical protein TDEL_0E00780 [Torulaspora delbrueckii]
gi|359749193|emb|CCE92321.1| hypothetical protein TDEL_0E00780 [Torulaspora delbrueckii]
Length = 336
Score = 306 bits (783), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 152/316 (48%), Positives = 211/316 (66%), Gaps = 11/316 (3%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP +L DV ++V T+ R E +LPHLL YGPPGTGKTST++A+AR++YG
Sbjct: 12 PWVEKYRPATLDDVYGQNEVVGTVRRFIEEGQLPHLLFYGPPGTGKTSTVVALAREIYGK 71
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFAST-QSFSFGVKASVKLVLLDEADAMTKDAQFA 160
Y NM+LELNASDDRGIDVVR QI+DFAST Q FS G KL++LDEADAMT AQ A
Sbjct: 72 NYSNMVLELNASDDRGIDVVRNQIKDFASTRQIFSKG----FKLIILDEADAMTNAAQNA 127
Query: 161 LRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDV 220
LRR+IEKYTKNTRF ++ N +K+ PAL SRCTRFRF PL + R+ V+ E L +
Sbjct: 128 LRRIIEKYTKNTRFCILANYAHKLTPALLSRCTRFRFQPLPTEALERRMNKVLSNEHLKM 187
Query: 221 TEGGLAALVRLCNGDMRKALNILQSTHMA-----SQQITEEAVYLCTGNPLPKDIEQISY 275
T AL++L GDMR+ LN+LQ+ ++IT++ +Y C G P P D+E I
Sbjct: 188 TTSAKEALLKLSRGDMRRVLNVLQACKATLDKPLEEEITDDTIYDCCGAPRPADLETILE 247
Query: 276 WLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPS-DVRVRLMNDLADIEYR 334
+L + + ++ ++ ++ KGLAL+D++ + ++ S + R+ ++ L+DIEY
Sbjct: 248 SILKDDWTTAYYTLNRVRGAKGLALIDLIEGFVDILESYELKSQEARISMLTQLSDIEYA 307
Query: 335 LSFGCNDKLQLGSIIS 350
+S G ND++Q ++I
Sbjct: 308 ISRGGNDRIQGSAVIG 323
>gi|70985298|ref|XP_748155.1| DNA replication factor C subunit Rfc3 [Aspergillus fumigatus Af293]
gi|66845783|gb|EAL86117.1| DNA replication factor C subunit Rfc3, putative [Aspergillus
fumigatus Af293]
gi|159125922|gb|EDP51038.1| DNA replication factor C subunit Rfc3, putative [Aspergillus
fumigatus A1163]
Length = 396
Score = 305 bits (782), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 159/336 (47%), Positives = 217/336 (64%), Gaps = 28/336 (8%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP +L DV+ H+DI+ TI++ NRLPHLLLYGPPGTGKTSTILA+AR++YG+
Sbjct: 46 PWVEKYRPNTLDDVSGHQDILATINKFIEANRLPHLLLYGPPGTGKTSTILALARRIYGS 105
Query: 102 Q-YHNMILELNASDDRGIDVVRQQIQDFASTQSF---------SFGVKASVKLVLLDEAD 151
M+LELNASDDRGIDVVR+QI+ FAST+ S AS KL++LDEAD
Sbjct: 106 NNMRQMVLELNASDDRGIDVVREQIKTFASTKQIFSMAAPSASSGSSLASFKLIILDEAD 165
Query: 152 AMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKH 211
AMT AQ ALRR++E+YT NTRF +I N +K+ PAL SRCTRFRF+PL+ + +
Sbjct: 166 AMTSTAQMALRRIMERYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKEQDIRSLVDQ 225
Query: 212 VIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQ-----------------IT 254
VIE E + + +++LVRL GDMR+ALN+LQ+ H +S+ IT
Sbjct: 226 VIEKEQIRIQPEAVSSLVRLSKGDMRRALNVLQACHASSRPLPMKNATNDEPQSEPEIIT 285
Query: 255 EEAVYLCTGNPLPKDIEQISYWLLNES-FADSFKRISEMKMRKGLALVDIVREVTMFVFK 313
E +Y C P P DI++I LL+ S ++ +K KGLAL DI+ + + +
Sbjct: 286 NETIYDCIAAPHPSDIQEIMTTLLSTSDITSCLNTLNTLKANKGLALADILSALAEQLQQ 345
Query: 314 IKMPSDVRVRLMNDLADIEYRLSFGCNDKLQLGSII 349
+++P R+ + LADIE+RLS G ++ +Q G ++
Sbjct: 346 LEVPPQTRITWLEGLADIEFRLSAGGSETMQTGGMV 381
>gi|452840856|gb|EME42793.1| hypothetical protein DOTSEDRAFT_80413 [Dothistroma septosporum
NZE10]
Length = 401
Score = 305 bits (782), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 160/338 (47%), Positives = 214/338 (63%), Gaps = 30/338 (8%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP SL+DV+ H DI+ TI++ NRLPHLLLYGPPGTGKTST LA+AR++YG
Sbjct: 49 PWVEKYRPNSLSDVSGHHDILATINKFVDTNRLPHLLLYGPPGTGKTSTALAMARRIYGN 108
Query: 102 Q-YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFG----------VKASVKLVLLDEA 150
+ M+LELNASDDRGIDVVR+QI+ F+ST+ G A KL++LDEA
Sbjct: 109 KNMRQMVLELNASDDRGIDVVREQIKTFSSTKQIFAGSFDKSNNQNDTIAHFKLIILDEA 168
Query: 151 DAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLK 210
DAMT AQ ALRR++EKYT NTRF +I N +K+ PAL SRCTRFRF+PL+ + + +
Sbjct: 169 DAMTSTAQMALRRIMEKYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKDADIRQLVD 228
Query: 211 HVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQ------------------ 252
VI E +++ +LV L GDMR+ALN+LQ+ H +S
Sbjct: 229 KVISEEVVNIAPEAADSLVTLSKGDMRRALNVLQACHASSTPLHVPGQPLQESKDIERDL 288
Query: 253 ITEEAVYLCTGNPLPKDIEQISYWLLNESFADS-FKRISEMKMRKGLALVDIVREVTMFV 311
IT+E +Y C P P DI+ I+ LL + S I+ +K KGLAL DI+ + +
Sbjct: 289 ITQETIYDCIAAPHPGDIDTITQTLLTTANVGSCLSTINTLKKTKGLALADILTAMGEQL 348
Query: 312 FKIKMPSDVRVRLMNDLADIEYRLSFGCNDKLQLGSII 349
+I++P+ RV + LADIEYRLS G ++ +Q G ++
Sbjct: 349 TEIEVPAQTRVTWLEGLADIEYRLSGGGSESVQTGGLV 386
>gi|396495754|ref|XP_003844622.1| similar to replication factor C subunit 3 [Leptosphaeria maculans
JN3]
gi|312221202|emb|CBY01143.1| similar to replication factor C subunit 3 [Leptosphaeria maculans
JN3]
Length = 409
Score = 305 bits (782), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 162/334 (48%), Positives = 218/334 (65%), Gaps = 27/334 (8%)
Query: 44 VEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ- 102
VEKYRP SL DV H+DI+ TI++ NRLPHLLLYGPPGTGKTST+LA+AR++YG +
Sbjct: 62 VEKYRPNSLDDVEGHQDIIATINKFVDSNRLPHLLLYGPPGTGKTSTVLALARRIYGNKN 121
Query: 103 YHNMILELNASDDRGIDVVRQQIQDFAST-QSFSFGVKA------SVKLVLLDEADAMTK 155
M+LELNASDDRGIDVVR+QI+ F+ST Q FS KA + KL++LDEADAMT
Sbjct: 122 MRQMVLELNASDDRGIDVVREQIKTFSSTKQIFSAAPKAGDTALATFKLIILDEADAMTA 181
Query: 156 DAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEA 215
AQ ALRR++EKYT NTRF +I N +K+ PAL SRCTRFRF+PL+ + + VIE
Sbjct: 182 TAQMALRRIMEKYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKDQDIRNLVDKVIEE 241
Query: 216 EGLDVTEGGLAALVRLCNGDMRKALNILQSTHMAS------------------QQITEEA 257
E +++T+ +LV L GDMR+ALN+LQ+ H +S QIT+
Sbjct: 242 ENVNITQDATDSLVSLSKGDMRRALNVLQACHASSTPLQAPGKPAPDPSIIVRDQITQTT 301
Query: 258 VYLCTGNPLPKDIEQISYWLLNES-FADSFKRISEMKMRKGLALVDIVREVTMFVFKIKM 316
+Y C P P DI+ I LL+++ + + ++ +K+ KGLAL DI+ ++ + +
Sbjct: 302 IYDCIAAPHPSDIKYIIETLLSKNDMTECLRTVNNLKISKGLALADILTAISEELVTNDV 361
Query: 317 PSDVRVRLMNDLADIEYRLSFGCNDKLQLGSIIS 350
P V V M+ LADIEYRLS G ++ +Q G+ I
Sbjct: 362 PPQVMVTWMSGLADIEYRLSGGGSEAIQTGAAIG 395
>gi|398392868|ref|XP_003849893.1| hypothetical protein MYCGRDRAFT_110326 [Zymoseptoria tritici
IPO323]
gi|339469771|gb|EGP84869.1| hypothetical protein MYCGRDRAFT_110326 [Zymoseptoria tritici
IPO323]
Length = 460
Score = 305 bits (782), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 160/336 (47%), Positives = 212/336 (63%), Gaps = 29/336 (8%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP SL DV H+DI+ TI++ NRLPHLLLYGPPGTGKTST+LA+AR++YG
Sbjct: 48 PWVEKYRPSSLDDVHGHQDILATINKFVDSNRLPHLLLYGPPGTGKTSTVLALARRIYGN 107
Query: 102 Q-YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFG---------VKASVKLVLLDEAD 151
+ M+LELNASDDRGIDVVR+QI+ F+ST+ G A+ KL++LDEAD
Sbjct: 108 KNMRQMVLELNASDDRGIDVVREQIKTFSSTKQIFAGSFDKSAQQSTIANYKLIILDEAD 167
Query: 152 AMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKH 211
AMT AQ ALRR++EKYT NTRF +I N +K+ PAL SRCTRFRF+PL+ V + + +
Sbjct: 168 AMTSTAQMALRRIMEKYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKEVDIRQLVDK 227
Query: 212 VIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQ------------------I 253
V+ E +++ +LV L GDMR+ALN+LQ+ H +S I
Sbjct: 228 VVREEDVNIAPDATDSLVTLSKGDMRRALNVLQACHASSTPLNVPGEKVKTGKDITRDLI 287
Query: 254 TEEAVYLCTGNPLPKDIEQISYWLLNESFADS-FKRISEMKMRKGLALVDIVREVTMFVF 312
T E +Y C P P DI I LL + S I+ +K KGLAL DI+ + +
Sbjct: 288 TNETIYDCIAAPHPGDIATIVQTLLTTANVGSCLSTINTLKKTKGLALADILTAMGEQLS 347
Query: 313 KIKMPSDVRVRLMNDLADIEYRLSFGCNDKLQLGSI 348
++++P+ RV + LADIEYRLS G ++ LQ G +
Sbjct: 348 ELEVPTQTRVAWLEGLADIEYRLSGGGSESLQTGGL 383
>gi|341038392|gb|EGS23384.1| DNA replication factor C-like protein [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 388
Score = 305 bits (781), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 157/335 (46%), Positives = 220/335 (65%), Gaps = 27/335 (8%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP +L+DV+ H+DI+ TI++ NRLPHLL YGPPGTGKTSTILA+AR++YGA
Sbjct: 43 PWVEKYRPATLSDVSGHQDILATINKFIESNRLPHLLFYGPPGTGKTSTILALARRIYGA 102
Query: 102 Q-YHNMILELNASDDRGIDVVRQQIQDFAST-QSFSFGVKA------SVKLVLLDEADAM 153
+ M+LELNASDDRGI+VVR+QI+ FAST Q F+ G A + KL++LDEADAM
Sbjct: 103 ENMRQMVLELNASDDRGIEVVREQIKTFASTKQIFTMGSSAGRAGIAAFKLIILDEADAM 162
Query: 154 TKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVI 213
T AQ ALRR++EKYT NTRF +I N +K+ PAL SRCTRFRF+PL+ + + VI
Sbjct: 163 TNTAQMALRRIMEKYTANTRFCIIANYSHKLSPALLSRCTRFRFSPLKEQDIRSLVDKVI 222
Query: 214 EAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMAS------------------QQITE 255
E E + +T + +LV+L GDMR+ALN+LQ+ H +S IT
Sbjct: 223 EEENVKITPDAVESLVKLSRGDMRRALNVLQACHASSTPLQLRDGPKIPGDQIVRDTITT 282
Query: 256 EAVYLCTGNPLPKDIEQISYWLLNES-FADSFKRISEMKMRKGLALVDIVREVTMFVFKI 314
E +Y C P P I++I LL+ S I+ +K+ +GLAL DI+ ++ + K+
Sbjct: 283 ETIYNCVAAPPPDAIKKILNTLLSTSDVTACLTIINMLKISQGLALADIITSLSEELVKL 342
Query: 315 KMPSDVRVRLMNDLADIEYRLSFGCNDKLQLGSII 349
++ V + ++ LA+IEYR++ G N+ +Q +++
Sbjct: 343 EVKPQVMITWLDALAEIEYRVASGANEAIQTAAVV 377
>gi|308479944|ref|XP_003102180.1| hypothetical protein CRE_06764 [Caenorhabditis remanei]
gi|308262335|gb|EFP06288.1| hypothetical protein CRE_06764 [Caenorhabditis remanei]
Length = 365
Score = 305 bits (781), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 150/319 (47%), Positives = 203/319 (63%), Gaps = 7/319 (2%)
Query: 34 TPPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILA 93
TP + PWVEKYRP L ++ AH +V T+ + LPHLL YGPPGTGKT+T+LA
Sbjct: 4 TPAVVSNLPWVEKYRPSKLDELVAHEQVVKTLTKFIENRTLPHLLFYGPPGTGKTTTVLA 63
Query: 94 VARKLYG-AQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKAS------VKLVL 146
ARK+Y A+ +M+LELNASD+RGIDVVR I +FA T+ AS K+V+
Sbjct: 64 AARKMYSPARMSSMVLELNASDERGIDVVRNTIVNFAQTKGLQSYATASSSDQVPFKMVI 123
Query: 147 LDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVT 206
LDEADAMTKDAQ ALRRVIEKYT N RF +ICN + IIPA+QSRCTRFRFAPL+ +
Sbjct: 124 LDEADAMTKDAQNALRRVIEKYTDNVRFCIICNYLASIIPAIQSRCTRFRFAPLDQKLIV 183
Query: 207 ERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPL 266
RL ++ +E + +T G AL+ + NGDMR +N LQST M+ ++E VY C G P
Sbjct: 184 PRLDFIVNSENIKMTSDGRQALLTVSNGDMRTVINTLQSTAMSFDTVSESTVYQCIGQPT 243
Query: 267 PKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMN 326
PK+++Q+ LLN+S I G AL D++ + +VF + +P + ++
Sbjct: 244 PKEMKQVVSILLNDSAKTCMNLIKTKLFDNGYALQDVITHLHDWVFTLDIPDEAMSAIVT 303
Query: 327 DLADIEYRLSFGCNDKLQL 345
L ++E L+ GC+++ QL
Sbjct: 304 GLGEVEQNLASGCSNETQL 322
>gi|151944257|gb|EDN62536.1| replication factor C subunit 3 [Saccharomyces cerevisiae YJM789]
gi|190409258|gb|EDV12523.1| replication factor C subunit 3 [Saccharomyces cerevisiae RM11-1a]
gi|256271294|gb|EEU06366.1| Rfc3p [Saccharomyces cerevisiae JAY291]
gi|259149079|emb|CAY82321.1| Rfc3p [Saccharomyces cerevisiae EC1118]
gi|323331837|gb|EGA73249.1| Rfc3p [Saccharomyces cerevisiae AWRI796]
gi|323335982|gb|EGA77259.1| Rfc3p [Saccharomyces cerevisiae Vin13]
gi|323346957|gb|EGA81235.1| Rfc3p [Saccharomyces cerevisiae Lalvin QA23]
gi|323352828|gb|EGA85130.1| Rfc3p [Saccharomyces cerevisiae VL3]
gi|365763611|gb|EHN05138.1| Rfc3p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 340
Score = 305 bits (781), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 152/322 (47%), Positives = 217/322 (67%), Gaps = 15/322 (4%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP++L +V +++ T+ + E +LPHLL YGPPGTGKTSTI+A+AR++YG
Sbjct: 14 PWVEKYRPETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGK 73
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFAST-QSFSFGVKASVKLVLLDEADAMTKDAQFA 160
Y NM+LELNASDDRGIDVVR QI+DFAST Q FS G KL++LDEADAMT AQ A
Sbjct: 74 NYSNMVLELNASDDRGIDVVRNQIKDFASTRQIFSKG----FKLIILDEADAMTNAAQNA 129
Query: 161 LRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDV 220
LRRVIE+YTKNTRF ++ N +K+ PAL SRCTRFRF PL + R+ +V+ E L +
Sbjct: 130 LRRVIERYTKNTRFCVLANYAHKLTPALLSRCTRFRFQPLPQEAIERRIANVLVHEKLKL 189
Query: 221 TEGGLAALVRLCNGDMRKALNILQSTHMA-----SQQITEEAVYLCTGNPLPKDIEQISY 275
+ AL+ L NGDMR+ LN+LQS +I+++ +Y C G P P D++ +
Sbjct: 190 SPNAEKALIELSNGDMRRVLNVLQSCKATLDNPDEDEISDDVIYECCGAPRPSDLKAVLK 249
Query: 276 WLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPS-DVRVRLMNDLADIEYR 334
+L + + + +++++ KGLAL+D++ + + ++ + + RV L+ LADIEY
Sbjct: 250 SILEDDWGTAHYTLNKVRSAKGLALIDLIEGIVKILEDYELQNEETRVHLLTKLADIEYS 309
Query: 335 LSFGCNDKLQ----LGSIISTF 352
+S G ND++Q +G+I ++F
Sbjct: 310 ISKGGNDQIQGSAVIGAIKASF 331
>gi|365758856|gb|EHN00681.1| Rfc3p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 340
Score = 305 bits (781), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 152/322 (47%), Positives = 218/322 (67%), Gaps = 15/322 (4%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP++L +V +++ T+ + + +LPHLL YGPPGTGKTSTI+A+AR++YG
Sbjct: 14 PWVEKYRPETLDEVYGQNEVISTVRKFVDQGKLPHLLFYGPPGTGKTSTIVALAREIYGR 73
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFAST-QSFSFGVKASVKLVLLDEADAMTKDAQFA 160
Y NM+LELNASDDRGIDVVR QI+DFAST Q FS G KL++LDEADAMT AQ A
Sbjct: 74 NYSNMVLELNASDDRGIDVVRNQIKDFASTRQIFSKG----FKLIILDEADAMTNAAQNA 129
Query: 161 LRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDV 220
LRRVIE+YTKNTRF ++ N +K+ PAL SRCTRFRF PL + R+ +V+ E L +
Sbjct: 130 LRRVIERYTKNTRFCVLANYAHKLTPALLSRCTRFRFQPLPQEAIERRIANVLVREKLKL 189
Query: 221 TEGGLAALVRLCNGDMRKALNILQSTHM-----ASQQITEEAVYLCTGNPLPKDIEQISY 275
+ AL+ L NGDMR+ LN+LQS +I+++ +Y C G P P D++ +
Sbjct: 190 SPEAEKALIELSNGDMRRVLNVLQSCKATLDNPGEDEISDDVIYECCGAPRPSDLKTVLK 249
Query: 276 WLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPS-DVRVRLMNDLADIEYR 334
+L + + + +++++ KGLAL+D++ + + K + + + RV+L+ LADIEY
Sbjct: 250 SMLEDDWGTAHYTLNKIRSAKGLALIDLIEGIVKILEKYDLQNEETRVQLLTRLADIEYS 309
Query: 335 LSFGCNDKLQ----LGSIISTF 352
+S G ND++Q +G+I ++F
Sbjct: 310 ISKGGNDQIQGSAVIGAIKTSF 331
>gi|6324039|ref|NP_014109.1| replication factor C subunit 3 [Saccharomyces cerevisiae S288c]
gi|585844|sp|P38629.1|RFC3_YEAST RecName: Full=Replication factor C subunit 3; Short=Replication
factor C3; AltName: Full=Activator 1 40 kDa subunit
gi|439118|gb|AAA34969.1| replication factor C [Saccharomyces cerevisiae]
gi|841466|gb|AAC49062.1| Rfc3p [Saccharomyces cerevisiae]
gi|1050872|gb|AAC49110.1| replication factor C, 40 kDa subunit [Saccharomyces cerevisiae]
gi|1302375|emb|CAA96207.1| RFC3 [Saccharomyces cerevisiae]
gi|285814375|tpg|DAA10269.1| TPA: replication factor C subunit 3 [Saccharomyces cerevisiae
S288c]
gi|392297062|gb|EIW08163.1| Rfc3p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 340
Score = 305 bits (780), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 152/322 (47%), Positives = 217/322 (67%), Gaps = 15/322 (4%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP++L +V +++ T+ + E +LPHLL YGPPGTGKTSTI+A+AR++YG
Sbjct: 14 PWVEKYRPETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGK 73
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFAST-QSFSFGVKASVKLVLLDEADAMTKDAQFA 160
Y NM+LELNASDDRGIDVVR QI+DFAST Q FS G KL++LDEADAMT AQ A
Sbjct: 74 NYSNMVLELNASDDRGIDVVRNQIKDFASTRQIFSKG----FKLIILDEADAMTNAAQNA 129
Query: 161 LRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDV 220
LRRVIE+YTKNTRF ++ N +K+ PAL SRCTRFRF PL + R+ +V+ E L +
Sbjct: 130 LRRVIERYTKNTRFCVLANYAHKLTPALLSRCTRFRFQPLPQEAIERRIANVLVHEKLKL 189
Query: 221 TEGGLAALVRLCNGDMRKALNILQSTHMA-----SQQITEEAVYLCTGNPLPKDIEQISY 275
+ AL+ L NGDMR+ LN+LQS +I+++ +Y C G P P D++ +
Sbjct: 190 SPNAEKALIELSNGDMRRVLNVLQSCKATLDNPDEDEISDDVIYECCGAPRPSDLKAVLK 249
Query: 276 WLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPS-DVRVRLMNDLADIEYR 334
+L + + + +++++ KGLAL+D++ + + ++ + + RV L+ LADIEY
Sbjct: 250 SILEDDWGTAHYTLNKVRSAKGLALIDLIEGIVKILEDYELQNEETRVHLLTKLADIEYS 309
Query: 335 LSFGCNDKLQ----LGSIISTF 352
+S G ND++Q +G+I ++F
Sbjct: 310 ISKGGNDQIQGSAVIGAIKASF 331
>gi|255955413|ref|XP_002568459.1| Pc21g14450 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211590170|emb|CAP96342.1| Pc21g14450 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 392
Score = 305 bits (780), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 167/373 (44%), Positives = 231/373 (61%), Gaps = 35/373 (9%)
Query: 13 DEDENQNLKPKD--------NGKNVIVSGTPPDIKAS-PWVEKYRPQSLADVAAHRDIVD 63
D DE PKD +GK V+ P + + + PWVEKYRP SL DV+ H+DI+
Sbjct: 3 DYDEMDVDAPKDLQFSSDNASGKKRTVADLPVEAQDNLPWVEKYRPSSLDDVSGHQDILA 62
Query: 64 TIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ-YHNMILELNASDDRGIDVVR 122
TI+R NRLPHLLLYGPPGTGKTSTILA+AR++YG + M+LELNASDDRGIDVVR
Sbjct: 63 TINRFVETNRLPHLLLYGPPGTGKTSTILALARRIYGTKNMRQMVLELNASDDRGIDVVR 122
Query: 123 QQIQDFAST-QSFSFGVK-------ASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRF 174
+QI+ FAST Q F+ + A KL++LDEADAMT AQ ALRR++E+YT NTRF
Sbjct: 123 EQIKTFASTKQIFNMAPQGTAGSPLAGFKLIILDEADAMTSTAQMALRRIMERYTANTRF 182
Query: 175 ALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNG 234
+I N +K+ PAL SRCTRFRF+PL+ V + + VIE EG+ + + +LV L G
Sbjct: 183 CVIANYTHKLSPALLSRCTRFRFSPLKEVDIRTLVDQVIEKEGVKIQPDAVDSLVTLSKG 242
Query: 235 DMRKALNILQSTHMAS----------------QQITEEAVYLCTGNPLPKDIEQISYWLL 278
DMR+ALN+LQ+ +S + +T +Y C P P DI++I +L
Sbjct: 243 DMRRALNVLQACFASSIPLPMRDAPKAPRPEPETVTNATIYDCIAAPHPSDIQEIMTTIL 302
Query: 279 NESFADS-FKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSF 337
+ S S + +K KGLAL DI+ + + ++ +P+ R+ + LA+IE+RL+
Sbjct: 303 STSDVTSCLNTVQTLKTTKGLALADILSALADQLQQLDVPAQTRITWLEGLAEIEWRLAG 362
Query: 338 GCNDKLQLGSIIS 350
G ++ +Q G ++
Sbjct: 363 GGSEAIQTGGLVG 375
>gi|323303302|gb|EGA57098.1| Rfc3p [Saccharomyces cerevisiae FostersB]
Length = 340
Score = 305 bits (780), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 152/322 (47%), Positives = 217/322 (67%), Gaps = 15/322 (4%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP++L +V +++ T+ + E +LPHLL YGPPGTGKTSTI+A+AR++YG
Sbjct: 14 PWVEKYRPETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGK 73
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFAST-QSFSFGVKASVKLVLLDEADAMTKDAQFA 160
Y NM+LELNASDDRGIDVVR QI+DFAST Q FS G KL++LDEADAMT AQ A
Sbjct: 74 NYSNMVLELNASDDRGIDVVRNQIKDFASTRQIFSKG----FKLIILDEADAMTNAAQNA 129
Query: 161 LRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDV 220
LRRVIE+YTKNTRF ++ N +K+ PAL SRCTRFRF PL + R+ +V+ E L +
Sbjct: 130 LRRVIERYTKNTRFCVLANYAHKLTPALLSRCTRFRFQPLPQEAIERRIANVLVHEKLKL 189
Query: 221 TEGGLAALVRLCNGDMRKALNILQSTHMA-----SQQITEEAVYLCTGNPLPKDIEQISY 275
+ AL+ L NGDMR+ LN+LQS +I+++ +Y C G P P D++ +
Sbjct: 190 SPNAEKALIELSNGDMRRVLNVLQSCKATLDNPDEDEISDDVIYECCGAPRPSDLKAVLK 249
Query: 276 WLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPS-DVRVRLMNDLADIEYR 334
+L + + + +++++ KGLAL+D++ + + ++ + + RV L+ LADIEY
Sbjct: 250 SILEDDWGTAHYTLNKVRSAKGLALIDLIEGIVKILEDYELQNEETRVHLLTKLADIEYS 309
Query: 335 LSFGCNDKLQ----LGSIISTF 352
+S G ND++Q +G+I ++F
Sbjct: 310 ISKGGNDQIQGSAVIGAIKASF 331
>gi|349580660|dbj|GAA25819.1| K7_Rfc3p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 340
Score = 305 bits (780), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 152/322 (47%), Positives = 217/322 (67%), Gaps = 15/322 (4%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP++L +V +++ T+ + E +LPHLL YGPPGTGKTSTI+A+AR++YG
Sbjct: 14 PWVEKYRPETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGK 73
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFAST-QSFSFGVKASVKLVLLDEADAMTKDAQFA 160
Y NM+LELNASDDRGIDVVR QI+DFAST Q FS G KL++LDEADAMT AQ A
Sbjct: 74 NYSNMVLELNASDDRGIDVVRNQIKDFASTRQIFSKG----FKLIILDEADAMTNAAQNA 129
Query: 161 LRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDV 220
LRRVIE+YTKNTRF ++ N +K+ PAL SRCTRFRF PL + R+ +V+ E L +
Sbjct: 130 LRRVIERYTKNTRFCVLANYAHKLTPALLSRCTRFRFQPLPQEAIERRIANVLVHEKLKL 189
Query: 221 TEGGLAALVRLCNGDMRKALNILQSTHMA-----SQQITEEAVYLCTGNPLPKDIEQISY 275
+ AL+ L NGDMR+ LN+LQS +I+++ +Y C G P P D++ +
Sbjct: 190 SPNAEKALIELSNGDMRRVLNVLQSCKATLDNPDEDEISDDVIYECCGAPRPSDLKAVLK 249
Query: 276 WLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPS-DVRVRLMNDLADIEYR 334
+L + + + +++++ KGLAL+D++ + + ++ + + RV L+ LADIEY
Sbjct: 250 SILEDDWGTAHYTLNKVRSAKGLALIDLIEGIVKILEDYELQNEETRVHLLTKLADIEYS 309
Query: 335 LSFGCNDKLQ----LGSIISTF 352
+S G ND++Q +G+I ++F
Sbjct: 310 ISKGGNDQIQGSAVIGAIKASF 331
>gi|294657961|ref|XP_002770526.1| DEHA2E22286p [Debaryomyces hansenii CBS767]
gi|199433083|emb|CAR65867.1| DEHA2E22286p [Debaryomyces hansenii CBS767]
Length = 343
Score = 304 bits (779), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 158/317 (49%), Positives = 211/317 (66%), Gaps = 9/317 (2%)
Query: 44 VEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQY 103
VEKYRP SL +V +DIVDT+ + E +LPHLL YGPPGTGKTSTI+A+AR++YG Y
Sbjct: 26 VEKYRPDSLDEVYGQQDIVDTVRKFVHEGKLPHLLFYGPPGTGKTSTIIALAREIYGPNY 85
Query: 104 HNMILELNASDDRGIDVVRQQIQDFAST-QSFSFGVKASVKLVLLDEADAMTKDAQFALR 162
NM+LELNASDDRGIDVVR QI++FAST Q FS G KL++LDEADAMT AQ +LR
Sbjct: 86 KNMVLELNASDDRGIDVVRNQIKNFASTMQIFSKG----FKLIILDEADAMTSVAQNSLR 141
Query: 163 RVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTE 222
R+IEKYTKNTRF ++ N +K+ PAL SRCTRFRF P+ + ERLK+VI E L + E
Sbjct: 142 RIIEKYTKNTRFCILANYSHKLNPALISRCTRFRFQPIGESAIQERLKNVIIKENLSINE 201
Query: 223 GGLAALVRLCNGDMRKALNILQ----STHMASQQITEEAVYLCTGNPLPKDIEQISYWLL 278
L++L NGDMR+ALN+LQ S +I ++ +Y C G P P+DIE +L
Sbjct: 202 EAEKTLLKLSNGDMRRALNVLQAVKASLDHDDDEIDQDMIYECIGAPHPQDIETALDSIL 261
Query: 279 NESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFG 338
+ + SF I + K KGLAL+D++ + ++ R+ ++ L+++EY +S G
Sbjct: 262 KDDWTTSFLTIDQYKRTKGLALIDMISGFVEILNNYQLKPKTRIEILKGLSEVEYGISKG 321
Query: 339 CNDKLQLGSIISTFTQA 355
N+K+Q +II A
Sbjct: 322 GNEKIQTSTIIGVIKDA 338
>gi|367055770|ref|XP_003658263.1| hypothetical protein THITE_2124823 [Thielavia terrestris NRRL 8126]
gi|347005529|gb|AEO71927.1| hypothetical protein THITE_2124823 [Thielavia terrestris NRRL 8126]
Length = 389
Score = 304 bits (778), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 159/335 (47%), Positives = 217/335 (64%), Gaps = 27/335 (8%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP SL+DV+ H+DI+ TI++ NRLPHLL YGPPGTGKTSTILA+AR++YG
Sbjct: 44 PWVEKYRPVSLSDVSGHQDILATINKFVDSNRLPHLLFYGPPGTGKTSTILALARRIYGH 103
Query: 102 Q-YHNMILELNASDDRGIDVVRQQIQDFAST-QSFSFGVKAS------VKLVLLDEADAM 153
Q M+LELNASDDRGI+VVR+ I+ FAST Q F+ G AS KL++LDEADAM
Sbjct: 104 QNMRQMVLELNASDDRGIEVVREHIKTFASTKQIFTAGSSASRAGIAGFKLIILDEADAM 163
Query: 154 TKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVI 213
T AQ ALRR++EKYT NTRF +I N +K+ PAL SRCTRFRF+PL + + VI
Sbjct: 164 TNTAQMALRRIMEKYTANTRFCIIANYAHKLSPALLSRCTRFRFSPLHEQDIRVLVDKVI 223
Query: 214 EAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMAS------------------QQITE 255
E EG+ + + +LVRL GDMR+ALN+LQ+ H +S + IT
Sbjct: 224 EEEGVKIMPDAVDSLVRLSKGDMRRALNVLQACHASSTPLQPRDGPKIPEQDIVRETITT 283
Query: 256 EAVYLCTGNPLPKDIEQISYWLLNESFADS-FKRISEMKMRKGLALVDIVREVTMFVFKI 314
E +Y C P P I++I LL+ S S I+ +K +GLAL DI+ ++ + K+
Sbjct: 284 ETIYNCVAAPPPDAIKKILSTLLSTSDVTSCLSTINTLKAAQGLALADIITALSEELVKL 343
Query: 315 KMPSDVRVRLMNDLADIEYRLSFGCNDKLQLGSII 349
++ V + + LAD+E+R+S G ++ +Q +++
Sbjct: 344 EVKPQVMITWLETLADVEHRVSSGASEAIQTAAVV 378
>gi|363751222|ref|XP_003645828.1| hypothetical protein Ecym_3534 [Eremothecium cymbalariae
DBVPG#7215]
gi|356889462|gb|AET39011.1| Hypothetical protein Ecym_3534 [Eremothecium cymbalariae
DBVPG#7215]
Length = 332
Score = 304 bits (778), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 157/327 (48%), Positives = 216/327 (66%), Gaps = 12/327 (3%)
Query: 31 VSGTPPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTST 90
+S T ++ PW+EKYRP+ L +V +V+T+ + E RLPHLL YGPPGTGKTST
Sbjct: 1 MSNTKGTVENLPWIEKYRPERLDEVYGQTRVVETVRKFAQEGRLPHLLFYGPPGTGKTST 60
Query: 91 ILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFAST-QSFSFGVKASVKLVLLDE 149
I A+AR++YG Y M+LELNASDDRGIDVVR QI++FAST Q FS G KL++LDE
Sbjct: 61 ISALAREIYGKNYRKMVLELNASDDRGIDVVRNQIKEFASTRQIFSKG----FKLIILDE 116
Query: 150 ADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTER- 208
ADAMT AQ ALRR+IE++TKNTRF ++ N +K+ PAL SRCTRFRF P+ P ER
Sbjct: 117 ADAMTSAAQNALRRIIERFTKNTRFCILANYAHKLTPALLSRCTRFRFQPV-PAQSIERC 175
Query: 209 LKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMA-----SQQITEEAVYLCTG 263
+ +V+ E L + E AL+RL NGDMRKALN+LQ++ Q+TE+ +Y C G
Sbjct: 176 VLNVMAHEHLTLAEDARRALLRLANGDMRKALNVLQASKATLDNPEKDQVTEDTIYECIG 235
Query: 264 NPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVR 323
P PKDIE + +L + + + ++++K GLAL+D++ + + ++ R+
Sbjct: 236 APHPKDIESLMESILKDDWTTASYTVNKIKTNHGLALIDMIEGFVELLEEYELKESTRIE 295
Query: 324 LMNDLADIEYRLSFGCNDKLQLGSIIS 350
L+ LADIEY +S G DK+Q + I+
Sbjct: 296 LLCKLADIEYAISKGGTDKIQSSATIA 322
>gi|261200183|ref|XP_002626492.1| activator 1 subunit 3 [Ajellomyces dermatitidis SLH14081]
gi|239593564|gb|EEQ76145.1| activator 1 subunit 3 [Ajellomyces dermatitidis SLH14081]
gi|239607557|gb|EEQ84544.1| replication factor C [Ajellomyces dermatitidis ER-3]
gi|327357386|gb|EGE86243.1| replication factor C [Ajellomyces dermatitidis ATCC 18188]
Length = 404
Score = 304 bits (778), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 162/330 (49%), Positives = 211/330 (63%), Gaps = 27/330 (8%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP +L DV+ H+DI+ TI+R NRLPHLLLYGPPGTGKTSTILA+AR++YG
Sbjct: 46 PWVEKYRPNTLEDVSGHQDIIGTINRFIDTNRLPHLLLYGPPGTGKTSTILALARRIYGV 105
Query: 102 Q-YHNMILELNASDDRGIDVVRQQIQDFAST-QSFSFGVKA-------SVKLVLLDEADA 152
+ M+LELNASDDRGIDVVR QI+ FAST Q FS A + KL++LDEADA
Sbjct: 106 KNMRQMVLELNASDDRGIDVVRDQIKTFASTKQIFSMAPAAKAESTLGAFKLIILDEADA 165
Query: 153 MTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHV 212
MT AQ ALRR++EKYT N RF +I N +K+ PAL SRCTRFRF+PL+ + + V
Sbjct: 166 MTAVAQMALRRIMEKYTANARFCIIANYSHKLSPALLSRCTRFRFSPLKEKDIRVLVDQV 225
Query: 213 IEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMAS-----------------QQITE 255
IE E + + + +LV+L GDMR+ALN+LQ+ H +S + IT+
Sbjct: 226 IETEQVRIQPEAIDSLVKLSKGDMRRALNVLQACHASSIPLPIKNAPKDQPTPDHETITD 285
Query: 256 EAVYLCTGNPLPKDIEQISYWLLNESFADS-FKRISEMKMRKGLALVDIVREVTMFVFKI 314
E +Y C P P DI+ I LL S S I +K KGLAL DI+ ++ + I
Sbjct: 286 ETIYTCIAAPHPSDIKTIITALLTTSDVTSCLNTIKTLKSNKGLALADILTSISTELQHI 345
Query: 315 KMPSDVRVRLMNDLADIEYRLSFGCNDKLQ 344
++P+ R+ M LADIE+RL+ G + +Q
Sbjct: 346 EVPAATRIIWMEGLADIEWRLAGGGGEMVQ 375
>gi|425772715|gb|EKV11110.1| hypothetical protein PDIG_52530 [Penicillium digitatum PHI26]
gi|425775221|gb|EKV13502.1| hypothetical protein PDIP_47760 [Penicillium digitatum Pd1]
Length = 393
Score = 303 bits (777), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 164/369 (44%), Positives = 232/369 (62%), Gaps = 28/369 (7%)
Query: 10 MDFDEDENQNLKPKD-NGKNVIVSGTPPDIKAS-PWVEKYRPQSLADVAAHRDIVDTIDR 67
MD D ++ + +GK V+ P + + + PWVEKYRP SL DV+ H+DI+ TI+R
Sbjct: 8 MDVDASKDVQFSSDNASGKKRTVADLPVEAQDNLPWVEKYRPSSLDDVSGHQDILATINR 67
Query: 68 LTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ-YHNMILELNASDDRGIDVVRQQIQ 126
NRLPHLLLYGPPGTGKTSTILA+AR++YG + M+LELNASDDRGIDVVR+QI+
Sbjct: 68 FVETNRLPHLLLYGPPGTGKTSTILALARRIYGTKNMRQMVLELNASDDRGIDVVREQIK 127
Query: 127 DFAST-QSFSFGVK-------ASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALIC 178
FAST Q F+ + A KL++LDEADAMT AQ ALRR++E+YT NTRF +I
Sbjct: 128 TFASTKQIFNMAPQGTAGSPLAGFKLIILDEADAMTSTAQMALRRIMERYTSNTRFCVIA 187
Query: 179 NQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRK 238
N +K+ PAL SRCTRFRF+PL+ V + + VIE EG+ + + +LV L GDMR+
Sbjct: 188 NYTHKLSPALLSRCTRFRFSPLKEVDIRTLVDKVIENEGVRMQPDAVDSLVTLSKGDMRR 247
Query: 239 ALNILQSTHMAS----------------QQITEEAVYLCTGNPLPKDIEQISYWLLNESF 282
ALN+LQ+ +S + +T +Y C P P DI++I +L+ S
Sbjct: 248 ALNVLQACFASSIPLPMRDAPKAPRPKPETVTNATIYDCIAAPHPSDIQEIMTTILSTSD 307
Query: 283 ADS-FKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCND 341
S + +K KGLAL DI+ + + ++++P+ R+ + LA+IE+RL+ G ++
Sbjct: 308 VTSCLNTVQTLKTTKGLALADILSALADQLQQLEVPAQTRITWLEGLAEIEWRLAGGGSE 367
Query: 342 KLQLGSIIS 350
+Q G ++
Sbjct: 368 AIQTGGLVG 376
>gi|254579519|ref|XP_002495745.1| ZYRO0C02090p [Zygosaccharomyces rouxii]
gi|238938636|emb|CAR26812.1| ZYRO0C02090p [Zygosaccharomyces rouxii]
Length = 338
Score = 303 bits (777), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 157/337 (46%), Positives = 221/337 (65%), Gaps = 14/337 (4%)
Query: 33 GTPPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTIL 92
G +++ PWVEKYRP+SL DV +++ TI + +LPHLL YGPPGTGKTS+I+
Sbjct: 4 GNVKNMENLPWVEKYRPESLDDVYGQTEVITTIRKFLETGKLPHLLFYGPPGTGKTSSII 63
Query: 93 AVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFAST-QSFSFGVKASVKLVLLDEAD 151
A+AR++YG Y NM+LELNASDDRGIDVVR QI+DFAST Q FS G KL++LDEAD
Sbjct: 64 ALAREIYGKNYSNMVLELNASDDRGIDVVRNQIKDFASTRQIFSKG----FKLIILDEAD 119
Query: 152 AMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKH 211
AMT AQ ALRR+IE+YTKNTRF ++ N +K+ PAL SRCTRFRF PL + R+ +
Sbjct: 120 AMTNAAQNALRRIIERYTKNTRFCILANYAHKLTPALLSRCTRFRFQPLPREAIQRRISN 179
Query: 212 VIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQ----ITEEAVYLCTGNPLP 267
V+ E L +TE AL+ L GDMR+ LN+LQ+ Q IT++ +Y C G P P
Sbjct: 180 VLVREQLQMTESAENALLDLSRGDMRRVLNVLQACKAVIDQPNVEITDDLIYDCCGAPNP 239
Query: 268 KDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSD-VRVRLMN 326
+D+E I +L E + + + +++ KGLAL+D++ + + ++ ++ R+ L+
Sbjct: 240 QDLETILDSILKEDWTTAHYTLQKVRTSKGLALIDLIEGIVSILQGYQLENESTRISLLT 299
Query: 327 DLADIEYRLSFGCNDKLQLGSII----STFTQARSAI 359
L DIEY +S G ++K+Q ++I S+F Q + I
Sbjct: 300 GLGDIEYAISRGGSEKIQTSAVIGVVKSSFEQEATKI 336
>gi|366988323|ref|XP_003673928.1| hypothetical protein NCAS_0A09890 [Naumovozyma castellii CBS 4309]
gi|342299791|emb|CCC67547.1| hypothetical protein NCAS_0A09890 [Naumovozyma castellii CBS 4309]
Length = 336
Score = 303 bits (777), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 152/322 (47%), Positives = 219/322 (68%), Gaps = 15/322 (4%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP++L DV ++V T+ + +E +LPHLL YGPPGTGKTSTI+A+AR++YG
Sbjct: 14 PWVEKYRPETLDDVYGQTEVVTTVRKFLAEGKLPHLLFYGPPGTGKTSTIVALAREIYGR 73
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFAST-QSFSFGVKASVKLVLLDEADAMTKDAQFA 160
Y NM+LELNASDDRGIDVVR QI+DFAST Q FS G KL++LDEADAMT AQ A
Sbjct: 74 NYSNMVLELNASDDRGIDVVRNQIKDFASTRQIFSKG----FKLIILDEADAMTNAAQNA 129
Query: 161 LRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDV 220
LRR+IEKYTKNTRF ++ N +K+ PAL SRCTRFRF PL + R+ +V+ E L +
Sbjct: 130 LRRIIEKYTKNTRFCILANYSHKLTPALLSRCTRFRFQPLPREAIEMRIANVLVHENLKL 189
Query: 221 TEGGLAALVRLCNGDMRKALNILQSTHMA-----SQQITEEAVYLCTGNPLPKDIEQISY 275
++ AL+ L GDMR+ LN+LQ++ +I E +Y C G P P D++ +
Sbjct: 190 SDEAKEALITLSQGDMRRVLNVLQASKATLDDPVKDEIDAEVIYECCGAPRPNDLKTVLK 249
Query: 276 WLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDV-RVRLMNDLADIEYR 334
+L + ++ ++ +++++ KGLAL+D++ + + ++ +++ R+ L+ L DIEY
Sbjct: 250 SILEDDWSTAYYTLTKIRSLKGLALIDLIEGIVKILEDYELKNELTRITLLTKLGDIEYA 309
Query: 335 LSFGCNDKLQ----LGSIISTF 352
+S G N+K+Q +G+I S+F
Sbjct: 310 ISKGGNEKIQSSAVIGAIKSSF 331
>gi|242770327|ref|XP_002341956.1| DNA replication factor C subunit Rfc3, putative [Talaromyces
stipitatus ATCC 10500]
gi|218725152|gb|EED24569.1| DNA replication factor C subunit Rfc3, putative [Talaromyces
stipitatus ATCC 10500]
Length = 399
Score = 303 bits (777), Expect = 7e-80, Method: Compositional matrix adjust.
Identities = 159/338 (47%), Positives = 215/338 (63%), Gaps = 27/338 (7%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP SL +V H+DI+ TI+R +RLPHLLLYGPPGTGKT+TILA+AR++YG
Sbjct: 46 PWVEKYRPNSLDEVQGHQDILATINRFIDSHRLPHLLLYGPPGTGKTTTILALARRIYGI 105
Query: 102 Q-YHNMILELNASDDRGIDVVRQQIQDFAST-QSFSFGVKAS-------VKLVLLDEADA 152
+ M+LELNASDDRGIDVVR+QI+ FAST Q FS A+ KL++LDEADA
Sbjct: 106 KNMRQMVLELNASDDRGIDVVREQIKTFASTKQIFSVAAPAAKENSLGAFKLIILDEADA 165
Query: 153 MTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHV 212
MT AQ ALRR++EKYT NTRF +I N +K+ PAL SRCTRFRF+PL+ + + V
Sbjct: 166 MTATAQMALRRIMEKYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKEADIRSLVDKV 225
Query: 213 IEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMAS-----------------QQITE 255
IEAE + + +LVRL GDMR+ALN+LQ+ H +S + IT+
Sbjct: 226 IEAENVRIQPEATESLVRLSKGDMRRALNVLQACHASSIPLPMRNAPKDQPSPEHELITD 285
Query: 256 EAVYLCTGNPLPKDIEQISYWLLNES-FADSFKRISEMKMRKGLALVDIVREVTMFVFKI 314
+Y C P P DI +I LL+ S I+ +K KGLAL DI+ + + +
Sbjct: 286 ATIYNCIAAPHPSDIREIMTTLLSTSDVISCLNTINTLKTSKGLALADILSALGEQLQTL 345
Query: 315 KMPSDVRVRLMNDLADIEYRLSFGCNDKLQLGSIISTF 352
++P+ R+ + LA++E+RLS G ++ +Q G ++
Sbjct: 346 EVPAQTRISWLEGLAEVEWRLSGGGSEMVQTGGLVGVI 383
>gi|401839265|gb|EJT42559.1| RFC3-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 340
Score = 303 bits (777), Expect = 7e-80, Method: Compositional matrix adjust.
Identities = 151/322 (46%), Positives = 218/322 (67%), Gaps = 15/322 (4%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP++L +V +++ T+ + + +LPHLL YGPPGTGKTSTI+A+AR++YG
Sbjct: 14 PWVEKYRPETLDEVYGQNEVISTVRKFVDQGKLPHLLFYGPPGTGKTSTIVALAREIYGR 73
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFAST-QSFSFGVKASVKLVLLDEADAMTKDAQFA 160
Y NM+LELNASDDRGIDVVR QI+DFAST Q FS G KL++LDEADAMT AQ A
Sbjct: 74 NYSNMVLELNASDDRGIDVVRNQIKDFASTRQIFSKG----FKLIILDEADAMTNAAQNA 129
Query: 161 LRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDV 220
LRRVIE+YTKNTRF ++ N +K+ PAL SRCTRFRF PL + R+ +V+ E L +
Sbjct: 130 LRRVIERYTKNTRFCVLANYAHKLTPALLSRCTRFRFQPLPQEAIERRIANVLVREKLKL 189
Query: 221 TEGGLAALVRLCNGDMRKALNILQSTHM-----ASQQITEEAVYLCTGNPLPKDIEQISY 275
+ AL+ L NGDMR+ LN+LQS +I+++ +Y C G P P D++ +
Sbjct: 190 SPEAEKALIELSNGDMRRVLNVLQSCKATLDNPGEDEISDDVIYECCGAPRPSDLKTVLK 249
Query: 276 WLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPS-DVRVRLMNDLADIEYR 334
+L + + + +++++ KGLAL+D++ + + + + + + RV+L+ LADIEY
Sbjct: 250 SMLEDDWGTAHYTLNKIRSAKGLALIDLIEGIVKILEEYDLQNEETRVQLLTRLADIEYS 309
Query: 335 LSFGCNDKLQ----LGSIISTF 352
+S G ND++Q +G+I ++F
Sbjct: 310 ISKGGNDQIQGSAVIGAIKTSF 331
>gi|429863915|gb|ELA38322.1| replication factor c subunit 3 [Colletotrichum gloeosporioides Nara
gc5]
Length = 389
Score = 303 bits (776), Expect = 9e-80, Method: Compositional matrix adjust.
Identities = 159/338 (47%), Positives = 220/338 (65%), Gaps = 27/338 (7%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP +L DV+ H+DI+ TI++ NRLPHLLLYGPPGTGKTSTILA+AR++YGA
Sbjct: 43 PWVEKYRPVNLNDVSGHQDILATINKFVDSNRLPHLLLYGPPGTGKTSTILALARRIYGA 102
Query: 102 Q-YHNMILELNASDDRGIDVVRQQIQDFAST-QSFSFGVKA------SVKLVLLDEADAM 153
+ M+LELNASDDRGIDVVR+QI+ FAST Q F+ G A S KL++LDEADAM
Sbjct: 103 ENMRQMVLELNASDDRGIDVVREQIKTFASTKQIFTLGPAAKAGGMASYKLIILDEADAM 162
Query: 154 TKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVI 213
T AQ ALRR++EKYT NTRF +I N +K+ PAL SRCTRFRF+PL+ + + VI
Sbjct: 163 TNTAQMALRRIMEKYTVNTRFCIIANYSHKLSPALLSRCTRFRFSPLKERDIRVLVDKVI 222
Query: 214 EAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMAS------------------QQITE 255
E E + + ALV+L GDMR+ALN+LQ+ H +S + IT
Sbjct: 223 EEEHVKIMSEATEALVKLSKGDMRRALNVLQACHASSTPLRTKDEPKVPDSEIVRETITT 282
Query: 256 EAVYLCTGNPLPKDIEQISYWLLN-ESFADSFKRISEMKMRKGLALVDIVREVTMFVFKI 314
E +Y C P P I++I LL+ I+ +K+ +GLAL DI+ V+ + +
Sbjct: 283 ETIYNCIAAPQPDAIQEILDTLLSTTDVTTCLTTINSLKVSRGLALADIITAVSEQLATL 342
Query: 315 KMPSDVRVRLMNDLADIEYRLSFGCNDKLQLGSIISTF 352
++ +V ++ ++ LADIE+R++ G ++ +Q G+++
Sbjct: 343 EVKPEVMIKWLDGLADIEHRVAGGGSEAVQTGAVVGVI 380
>gi|310795633|gb|EFQ31094.1| replication factor C [Glomerella graminicola M1.001]
Length = 393
Score = 303 bits (776), Expect = 9e-80, Method: Compositional matrix adjust.
Identities = 159/342 (46%), Positives = 222/342 (64%), Gaps = 31/342 (9%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP SLADV+ H+DI+ TI++ NRLPHLLLYGPPGTGKTSTILA+AR++YGA
Sbjct: 43 PWVEKYRPVSLADVSGHQDILVTINKFVDSNRLPHLLLYGPPGTGKTSTILALARRIYGA 102
Query: 102 Q-YHNMILELNASDDRGIDVVRQQIQDFAST-QSFSFG----------VKASVKLVLLDE 149
+ M+LELNASDDRGIDVVR+QI+ FAST Q F+ G AS KL++LDE
Sbjct: 103 ENMRQMVLELNASDDRGIDVVREQIKTFASTKQIFTLGPSAKSGGGGGGMASYKLIILDE 162
Query: 150 ADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERL 209
ADAMT AQ ALRR++EKYT NTRF +I N +K+ PAL SRCTRFRF+PL+ + +
Sbjct: 163 ADAMTNTAQMALRRIMEKYTVNTRFCIIANYSHKLSPALLSRCTRFRFSPLKERDIRVLV 222
Query: 210 KHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMAS------------------Q 251
VIE E + + ALV+L GDMR+ALN+LQ+ H +S +
Sbjct: 223 DKVIEEEHVKIMPEATEALVKLSKGDMRRALNVLQACHASSTPLQPKNAPKVAEGDIVRE 282
Query: 252 QITEEAVYLCTGNPLPKDIEQISYWLLNESFADS-FKRISEMKMRKGLALVDIVREVTMF 310
I+ E +Y C P P I++I LL+ + S I+ +K+ +GLAL DI+ +
Sbjct: 283 MISTETIYNCIAAPQPDAIQEILDVLLSTTDVTSCLTTINTLKVARGLALADIITALAEQ 342
Query: 311 VFKIKMPSDVRVRLMNDLADIEYRLSFGCNDKLQLGSIISTF 352
+ +++ ++ ++ ++ LADIE+R++ G ++ +Q G+++
Sbjct: 343 LATLEVKPEIMIKWLDGLADIEHRVASGGSETVQTGAVVGVI 384
>gi|295658083|ref|XP_002789604.1| replication factor C subunit 3 [Paracoccidioides sp. 'lutzii' Pb01]
gi|226283157|gb|EEH38723.1| replication factor C subunit 3 [Paracoccidioides sp. 'lutzii' Pb01]
Length = 404
Score = 303 bits (776), Expect = 9e-80, Method: Compositional matrix adjust.
Identities = 161/330 (48%), Positives = 210/330 (63%), Gaps = 27/330 (8%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP SL DV+ H D++ TI+ NRLPHLLLYGPPGTGKTSTILA+AR++YGA
Sbjct: 46 PWVEKYRPNSLEDVSGHHDVIGTINTFIDSNRLPHLLLYGPPGTGKTSTILALARRIYGA 105
Query: 102 Q-YHNMILELNASDDRGIDVVRQQIQDFAST-QSFSFGVKA-------SVKLVLLDEADA 152
+ M+LELNASDDRGIDVVR QI+ FAST Q FS A + KL++LDEADA
Sbjct: 106 KNMRQMVLELNASDDRGIDVVRDQIKTFASTKQIFSVAPVAKSESSLGAFKLIILDEADA 165
Query: 153 MTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHV 212
MT AQ ALRR++EKYT N RF +I N +K+ PAL SRCTRFRF+PL+ + + V
Sbjct: 166 MTATAQMALRRIMEKYTANARFCIIANYTHKLSPALLSRCTRFRFSPLKEKDIRALVNQV 225
Query: 213 IEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMAS-----------------QQITE 255
IE E + + + +LV L GDMR+ALN+LQ+ H +S + +++
Sbjct: 226 IEKEQVRIQPEAIDSLVELSKGDMRRALNVLQACHASSIPLPIKNAPKDQPTAEHETVSQ 285
Query: 256 EAVYLCTGNPLPKDIEQISYWLLNESFADS-FKRISEMKMRKGLALVDIVREVTMFVFKI 314
E +Y C P P DI+ I LL S S I +K KGLAL DI+ ++ + +I
Sbjct: 286 ETIYTCIAAPHPADIKTIITALLTTSDVTSCLNTIQSLKSNKGLALADILTALSAELQRI 345
Query: 315 KMPSDVRVRLMNDLADIEYRLSFGCNDKLQ 344
++P+ RV M LADIE+RL+ G + +Q
Sbjct: 346 EVPAAARVVWMEGLADIEWRLASGGGEMVQ 375
>gi|50513623|pdb|1SXJ|C Chain C, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 340
Score = 303 bits (776), Expect = 9e-80, Method: Compositional matrix adjust.
Identities = 151/322 (46%), Positives = 217/322 (67%), Gaps = 15/322 (4%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP++L +V +++ T+ + E +LPHLL YGPPGTGKTSTI+A+AR++YG
Sbjct: 14 PWVEKYRPETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGK 73
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFAST-QSFSFGVKASVKLVLLDEADAMTKDAQFA 160
Y NM+LELNASDDRGIDVVR QI+DFAST Q FS G KL++LDEADAMT AQ A
Sbjct: 74 NYSNMVLELNASDDRGIDVVRNQIKDFASTRQIFSKG----FKLIILDEADAMTNAAQNA 129
Query: 161 LRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDV 220
LRRVIE+YTKNTRF ++ N +K+ PAL S+CTRFRF PL + R+ +V+ E L +
Sbjct: 130 LRRVIERYTKNTRFCVLANYAHKLTPALLSQCTRFRFQPLPQEAIERRIANVLVHEKLKL 189
Query: 221 TEGGLAALVRLCNGDMRKALNILQSTHMA-----SQQITEEAVYLCTGNPLPKDIEQISY 275
+ AL+ L NGDMR+ LN+LQS +I+++ +Y C G P P D++ +
Sbjct: 190 SPNAEKALIELSNGDMRRVLNVLQSCKATLDNPDEDEISDDVIYECCGAPRPSDLKAVLK 249
Query: 276 WLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPS-DVRVRLMNDLADIEYR 334
+L + + + +++++ KGLAL+D++ + + ++ + + RV L+ LADIEY
Sbjct: 250 SILEDDWGTAHYTLNKVRSAKGLALIDLIEGIVKILEDYELQNEETRVHLLTKLADIEYS 309
Query: 335 LSFGCNDKLQ----LGSIISTF 352
+S G ND++Q +G+I ++F
Sbjct: 310 ISKGGNDQIQGSAVIGAIKASF 331
>gi|268576128|ref|XP_002643044.1| Hypothetical protein CBG22959 [Caenorhabditis briggsae]
Length = 353
Score = 303 bits (775), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 150/325 (46%), Positives = 212/325 (65%), Gaps = 7/325 (2%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYG- 100
PWVEKYRP L ++ AH +V T+ + LPHLL YGPPGTGKT+T+LA ARK+Y
Sbjct: 12 PWVEKYRPSKLNELVAHEQVVKTLTKFIENRTLPHLLFYGPPGTGKTTTVLAAARKMYHP 71
Query: 101 AQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKAS------VKLVLLDEADAMT 154
++ +M+LELNASD+RGIDVVR I +FA T+ AS KLV+LDEADAMT
Sbjct: 72 SKMSSMVLELNASDERGIDVVRNTIVNFAQTKGLQAFASASDKDSVPFKLVILDEADAMT 131
Query: 155 KDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIE 214
KDAQ ALRRVIEKYT N RF +ICN + IIPA+QSRCTRFRFAPL+ + RL +++
Sbjct: 132 KDAQNALRRVIEKYTDNVRFCIICNYLASIIPAIQSRCTRFRFAPLDQSLIVPRLDFIVK 191
Query: 215 AEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQIS 274
+EGL +T G AL+R+ GDMR +N LQST M+ + ++E VY C G P P +++++
Sbjct: 192 SEGLQMTPDGREALLRVSKGDMRTVINTLQSTAMSFEVVSESTVYQCIGQPTPAEMKKVV 251
Query: 275 YWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYR 334
LLN++ +I + G AL D++ + F + +P ++ L ++E
Sbjct: 252 TLLLNQTAKTCMNKIKKSLFENGYALQDVITHLHDLAFSMDIPDSAMSAIIVGLGEVEEN 311
Query: 335 LSFGCNDKLQLGSIISTFTQARSAI 359
LS GC+++ QL ++++ F +A+S++
Sbjct: 312 LSTGCSNETQLAAVVAAFFEAKSSV 336
>gi|346973023|gb|EGY16475.1| replication factor C subunit 3 [Verticillium dahliae VdLs.17]
Length = 393
Score = 303 bits (775), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 156/340 (45%), Positives = 218/340 (64%), Gaps = 31/340 (9%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP +LADV+ H DI+ TI++ +NRLPHLLLYGPPGTGKTSTILA+AR++YG
Sbjct: 43 PWVEKYRPATLADVSGHHDILATINKFVDKNRLPHLLLYGPPGTGKTSTILALARRIYGP 102
Query: 102 Q-YHNMILELNASDDRGIDVVRQQIQDFAST-QSFSFGVKASV----------KLVLLDE 149
+ M+LELNASDDRGIDVVR+QI+ FAST Q F+ KL++LDE
Sbjct: 103 ENVRQMVLELNASDDRGIDVVREQIKTFASTKQIFTSARSGGGGGSSSGAAGYKLIVLDE 162
Query: 150 ADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERL 209
ADAMT AQ ALRR++EKYT NTRF +I N +K+ PAL SRCTRFRF+PL + +
Sbjct: 163 ADAMTNTAQMALRRIMEKYTANTRFCIIANYAHKLSPALLSRCTRFRFSPLREADIRVLV 222
Query: 210 KHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQ----------------- 252
V++ EG+ + ALVRL GDMR+ALN+LQ+ H +S
Sbjct: 223 DRVVDDEGVRIRPDATDALVRLAKGDMRRALNVLQACHASSTPLRAPGEPKVPDAQVVRD 282
Query: 253 -ITEEAVYLCTGNPLPKDIEQISYWLLNESFADS-FKRISEMKMRKGLALVDIVREVTMF 310
IT E +Y C P P +++I LL+ + S I+ +K+ +GLAL DI+ ++
Sbjct: 283 LITTETIYQCIAAPPPNAVQEILQALLSTADVTSCLSTINSLKVARGLALADIITSLSEE 342
Query: 311 VFKIKMPSDVRVRLMNDLADIEYRLSFGCNDKLQLGSIIS 350
++K+++ +V + ++ LADIE+R++ G + +Q G+++
Sbjct: 343 IYKLEVKPEVMISWLDGLADIEHRVAGGAGEAVQTGAVVG 382
>gi|302916499|ref|XP_003052060.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256732999|gb|EEU46347.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 389
Score = 303 bits (775), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 160/334 (47%), Positives = 219/334 (65%), Gaps = 26/334 (7%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP +L DV+ H DI+ TI++ NRLPHLLLYGPPGTGKTSTILA+AR++YGA
Sbjct: 44 PWVEKYRPNTLEDVSGHHDILATINKFVDTNRLPHLLLYGPPGTGKTSTILALARRIYGA 103
Query: 102 -QYHNMILELNASDDRGIDVVRQQIQDFAST-QSFSFGVKASV-----KLVLLDEADAMT 154
M+LELNASDDRGIDVVR+QI+ FAST Q FS G ++ KL++LDEADAMT
Sbjct: 104 ANMRQMVLELNASDDRGIDVVREQIKTFASTKQIFSLGGASARAGAGFKLIVLDEADAMT 163
Query: 155 KDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIE 214
AQ ALRR++EKYT NTRF +I N +K+ PAL SRCTRFRF+PL+ + + V+E
Sbjct: 164 STAQMALRRIMEKYTVNTRFCIIANYAHKLSPALLSRCTRFRFSPLKEADIRVLVDKVVE 223
Query: 215 AEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMAS------------------QQITEE 256
E + + + ALV+L GDMR+ALN+LQ+ H +S IT E
Sbjct: 224 EEHVKIGGEAVDALVKLSKGDMRRALNVLQACHASSTPLRPKDAPKIPDSEIKRDNITTE 283
Query: 257 AVYLCTGNPLPKDIEQISYWLLNESFADS-FKRISEMKMRKGLALVDIVREVTMFVFKIK 315
+Y C P P I++I LLN S S I+ +K+ GLAL DI+ ++ + K++
Sbjct: 284 TIYNCIAAPPPDAIKEILSTLLNTSDVTSCLTTINSLKVSLGLALADIITALSEELTKLE 343
Query: 316 MPSDVRVRLMNDLADIEYRLSFGCNDKLQLGSII 349
+ +V + ++ LADIE+R++ G ++ +Q G+++
Sbjct: 344 VSPEVMITWLDGLADIEHRVAGGSSESIQTGAVV 377
>gi|341892966|gb|EGT48901.1| hypothetical protein CAEBREN_08790 [Caenorhabditis brenneri]
Length = 349
Score = 302 bits (773), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 147/310 (47%), Positives = 202/310 (65%), Gaps = 6/310 (1%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYG- 100
PWVEKYRP ++ AH +V T+ R LPHLL YGPPGTGKT+T+LA ARK+Y
Sbjct: 12 PWVEKYRPSKFDELVAHEQVVKTLTRFIENRTLPHLLFYGPPGTGKTTTVLAAARKMYSP 71
Query: 101 AQYHNMILELNASDDRGIDVVRQQIQDFASTQSF-SFGVKAS----VKLVLLDEADAMTK 155
A+ +M+LELNASD+RGIDVVR I FA T+ SF +S KLV+LDEADAMT+
Sbjct: 72 AKMASMVLELNASDERGIDVVRNTIVTFAQTKGLQSFASASSEQLPFKLVILDEADAMTR 131
Query: 156 DAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEA 215
DAQ ALRRVIEKYT N RF +ICN + IIPA+QSRCTRFRFAPL+ + RL+H++++
Sbjct: 132 DAQNALRRVIEKYTDNVRFCIICNYLASIIPAIQSRCTRFRFAPLDQQLIVPRLQHIVDS 191
Query: 216 EGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISY 275
E + +T G AL+ + GDMR +N LQST M+ ++E VY C G P P +++++
Sbjct: 192 ESVKMTPDGQKALLTVSKGDMRTVINTLQSTAMSFDTVSESTVYQCIGQPTPNEMKEVVT 251
Query: 276 WLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRL 335
LLN+ + + I G AL D++ + VF + +P + ++ L ++E L
Sbjct: 252 CLLNKPSKECMETIKSRLFMNGYALQDVITHLHDIVFTMDIPDEAMTSIICGLGEVEENL 311
Query: 336 SFGCNDKLQL 345
+ GC+++LQL
Sbjct: 312 ASGCSNELQL 321
>gi|342183622|emb|CCC93102.1| unnamed protein product, partial [Trypanosoma congolense IL3000]
Length = 290
Score = 302 bits (773), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 144/272 (52%), Positives = 188/272 (69%), Gaps = 7/272 (2%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP +L++V AH +I++T RL +PHLL YGPPGTGKT+TI A A LYG
Sbjct: 19 PWVEKYRPATLSEVVAHEEILETTQRLMDSGNMPHLLFYGPPGTGKTTTIKASAHYLYGK 78
Query: 102 Q-YHNMILELNASDDRGIDVVRQQIQDFASTQSFSF------GVKASVKLVLLDEADAMT 154
+ +LE+NASDDRGIDVVR QI++FAST S F +S KLV+LDEAD M+
Sbjct: 79 ERIRANVLEMNASDDRGIDVVRNQIREFASTSSVFFNSASKTSAMSSFKLVILDEADQMS 138
Query: 155 KDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIE 214
DAQ ALRR+IEKYT+N RF ++CN +NKIIPALQSRCTRFRFAP++ + RL + +
Sbjct: 139 SDAQAALRRIIEKYTRNVRFCIVCNHINKIIPALQSRCTRFRFAPVKKAAMLPRLAFIAQ 198
Query: 215 AEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQIS 274
E + T GL A RL NGDMR+ LN LQ++ M++ +ITEE+VY TGNP P D+ +
Sbjct: 199 EESIPFTNDGLVAAFRLSNGDMRRCLNTLQASAMSTGEITEESVYRTTGNPTPADVRGLV 258
Query: 275 YWLLNESFADSFKRISEMKMRKGLALVDIVRE 306
+L+ +A S+ R+ KG++ D+VRE
Sbjct: 259 EEMLSSDYATSWNRVLRAVTEKGMSSTDLVRE 290
>gi|241955893|ref|XP_002420667.1| AAA ATPase family member, putative; replication factor C (RF-C)
subunit, putative [Candida dubliniensis CD36]
gi|223644009|emb|CAX41749.1| AAA ATPase family member, putative [Candida dubliniensis CD36]
Length = 339
Score = 302 bits (773), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 153/325 (47%), Positives = 218/325 (67%), Gaps = 12/325 (3%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP +L +V ++IVDT+ + +LPHLL YGPPGTGKTSTI+A+A+++YG+
Sbjct: 10 PWVEKYRPDNLEEVKGQQEIVDTVRKFVETRKLPHLLFYGPPGTGKTSTIIALAKEIYGS 69
Query: 102 -QYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASV-----KLVLLDEADAMTK 155
Y +MILELNASDDRGIDVVR QI++FAST+ F S+ KL++LDEADAMT
Sbjct: 70 INYKDMILELNASDDRGIDVVRNQIKNFASTRQI-FTKNNSINNDQFKLIILDEADAMTN 128
Query: 156 DAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEA 215
AQ +LRRVIEK+TKN RF ++ N +K+ PAL SRCTRFRF P++ + +RL VI
Sbjct: 129 IAQNSLRRVIEKFTKNCRFCILANYSHKLNPALISRCTRFRFTPIDISAIKDRLNIVIIK 188
Query: 216 EGLDVTEGGLAALVRLCNGDMRKALNILQSTHMA-----SQQITEEAVYLCTGNPLPKDI 270
E ++++ + AL++L NGDMR+ALN+LQS A + +I + +Y C G P P+DI
Sbjct: 189 ENVNISSDAIDALLKLSNGDMRRALNVLQSCKAALGDDENIEINVDMIYDCIGAPYPQDI 248
Query: 271 EQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLAD 330
E +L + + ++ +++ K+ KGLAL+D++ + K+ S R+ ++ L+D
Sbjct: 249 ETCLDSILKDDWTTAYLTLNKYKIIKGLALIDLITGFIEILNNYKLKSKTRLEILKGLSD 308
Query: 331 IEYRLSFGCNDKLQLGSIISTFTQA 355
IEY +S G NDK+Q +II A
Sbjct: 309 IEYGISKGGNDKIQTSAIIGVIKDA 333
>gi|403218101|emb|CCK72593.1| hypothetical protein KNAG_0K02300 [Kazachstania naganishii CBS
8797]
Length = 334
Score = 302 bits (773), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 152/316 (48%), Positives = 213/316 (67%), Gaps = 11/316 (3%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP SL DV +IV + + ENRLPHLL YGPPGTGKTSTI+A+AR++YG
Sbjct: 7 PWVEKYRPSSLDDVYGQGEIVSVLHKFIQENRLPHLLFYGPPGTGKTSTIVALAREIYGK 66
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFAST-QSFSFGVKASVKLVLLDEADAMTKDAQFA 160
Y +M+LELNASDDRGIDVVR QI++FAST Q FS G KLV+LDEADAMT AQ A
Sbjct: 67 NYSHMVLELNASDDRGIDVVRNQIKEFASTRQIFSRG----FKLVILDEADAMTNAAQNA 122
Query: 161 LRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDV 220
LRR+IEKYTKNTRF ++ N +K+ PALQSRCTRFRF PL + R+ +V+ E L V
Sbjct: 123 LRRIIEKYTKNTRFCILANYSHKLTPALQSRCTRFRFQPLPEDAIKRRIANVLVHEHLRV 182
Query: 221 TEGGLAALVRLCNGDMRKALNILQSTHMA-----SQQITEEAVYLCTGNPLPKDIEQISY 275
+E + AL++L GDMR+ LN+LQ++ S +++ + +Y C G P D+ +I
Sbjct: 183 SEDAVQALIKLSKGDMRRVLNVLQASKATLGDDESDEVSTDTIYECCGAARPADLRKILK 242
Query: 276 WLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSD-VRVRLMNDLADIEYR 334
+L E + ++ + +++ +GLAL+D++ + + + ++ + R+ L LAD+EY
Sbjct: 243 SILEEDWNTAYYTLHKIRQEQGLALIDLIEGIMEILDQYELQHEQTRINLCMKLADLEYA 302
Query: 335 LSFGCNDKLQLGSIIS 350
+S G + K+Q ++I
Sbjct: 303 ISKGGDSKIQSSALIG 318
>gi|402080324|gb|EJT75469.1| replication factor C subunit 3 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 410
Score = 301 bits (772), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 161/363 (44%), Positives = 221/363 (60%), Gaps = 49/363 (13%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP SLADV+ H+DI+ TI++ NRLPHLLLYGPPGTGKTSTILA+AR++YGA
Sbjct: 43 PWVEKYRPVSLADVSGHQDILATINKFVDSNRLPHLLLYGPPGTGKTSTILALARRIYGA 102
Query: 102 -QYHNMILELNASDDRGIDVVRQQIQDFAST-QSFSFGVK-------------------- 139
M+LELNASDDRGIDVVR+QI+ FAST Q FS G +
Sbjct: 103 DNMRQMVLELNASDDRGIDVVREQIKTFASTKQIFSMGPRNTAAAAAAAPSSSSSSAPSA 162
Query: 140 -------ASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRC 192
A KL++LDEADAMT AQ ALRR++EKYT NTRF +I N +K+ PAL SRC
Sbjct: 163 ARTGSTMALYKLIILDEADAMTNTAQMALRRIMEKYTANTRFCIIANYSHKLSPALLSRC 222
Query: 193 TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQ 252
TRFRF+PL+ + + V++ E ++V + ALVRL GDMR+ALN+LQ+ H +S
Sbjct: 223 TRFRFSPLKEADIRVLVDRVVDEESVNVVPEAVDALVRLSRGDMRRALNVLQACHASSTP 282
Query: 253 ITE-------------------EAVYLCTGNPLPKDIEQISYWLLNES-FADSFKRISEM 292
+ E E++Y C P P + +I LL + I+ +
Sbjct: 283 LRERGAKAPGPGDAVARDVVTVESIYSCIAAPPPDAVAEILKTLLGTADVVQCLGTINAL 342
Query: 293 KMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDKLQLGSIISTF 352
K +GLAL DI+ ++ V K+++ +V +R ++ LA IE+R++ G ++ +Q G+++
Sbjct: 343 KASRGLALADIITALSEEVVKLEVKPEVMIRWLDGLAQIEHRVAGGASETVQTGAVVGVI 402
Query: 353 TQA 355
Q
Sbjct: 403 RQG 405
>gi|115443244|ref|XP_001218429.1| activator 1 subunit 3 [Aspergillus terreus NIH2624]
gi|114188298|gb|EAU29998.1| activator 1 subunit 3 [Aspergillus terreus NIH2624]
Length = 398
Score = 301 bits (772), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 157/337 (46%), Positives = 215/337 (63%), Gaps = 28/337 (8%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP +L DV+ H+DI+ TI+R NRLPHLLLYGPPGTGKTSTILA+ARK+YG+
Sbjct: 45 PWVEKYRPNTLDDVSGHQDILATINRFIEANRLPHLLLYGPPGTGKTSTILALARKIYGS 104
Query: 102 Q-YHNMILELNASDDRGIDVVRQQIQDFASTQSF---------SFGVKASVKLVLLDEAD 151
+ M+LELNASDDRGIDVVR+QI+ FAST+ AS KL++LDEAD
Sbjct: 105 KNMRQMVLELNASDDRGIDVVREQIKTFASTKQIFSMGPQSGSGSSSLASFKLIILDEAD 164
Query: 152 AMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKH 211
AMT AQ ALRR++E+YT NTRF +I N +K+ PAL SRCTRFRF+PL+ + +
Sbjct: 165 AMTSTAQMALRRIMERYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKEPDIRSLVDL 224
Query: 212 VIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMAS-----------------QQIT 254
V+E E +++ + +LV L GDMR+ALN+LQ+ H +S + IT
Sbjct: 225 VVEKEQINIQPEAVDSLVTLSKGDMRRALNVLQACHASSIPLPMKNAPKDQVRPEAEVIT 284
Query: 255 EEAVYLCTGNPLPKDIEQISYWLLNES-FADSFKRISEMKMRKGLALVDIVREVTMFVFK 313
E +Y C P P DI++I LL S I+ +K KGLAL DI+ + + +
Sbjct: 285 NETIYDCIAAPYPADIQEIMTTLLTTSDITSCLNTINTLKANKGLALADILEALADQLQR 344
Query: 314 IKMPSDVRVRLMNDLADIEYRLSFGCNDKLQLGSIIS 350
+++P R+ + LA+IE+RL+ G ++ +Q G ++
Sbjct: 345 LEVPPQTRITWLEGLAEIEWRLAGGGSETMQTGGLVG 381
>gi|325096741|gb|EGC50051.1| activator 1 subunit 3 [Ajellomyces capsulatus H88]
Length = 443
Score = 301 bits (770), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 171/373 (45%), Positives = 230/373 (61%), Gaps = 37/373 (9%)
Query: 10 MDFDEDENQNL----KPKDNGKNVIVSGTPPDIKAS---PWVEKYRPQSLADVAAHRDIV 62
MD D+ ++N NG+ ++ P I+A PWVEKYRP +L DV+ H DI+
Sbjct: 8 MDVDDPPSKNAAQFSSDNTNGRGKRIAADLP-IEAEDVLPWVEKYRPNTLEDVSGHHDII 66
Query: 63 DTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ-YHNMILELNASDDRGIDVV 121
TI+R +NRLPHLLLYGPPGTGKTSTILA+AR++YG + M+LELNASDDRGIDVV
Sbjct: 67 STINRFIDKNRLPHLLLYGPPGTGKTSTILALARRIYGVKNMRQMVLELNASDDRGIDVV 126
Query: 122 RQQIQDFASTQSFSFGVKASVK---------LVLLDEADAMTKDAQFALRRVIEKYTKNT 172
R QI+ FAST+ F V S K L++LDEADAMT AQ ALRR++EKYT NT
Sbjct: 127 RDQIKTFASTKQI-FSVAPSTKSESTLGAFKLIILDEADAMTATAQMALRRIMEKYTANT 185
Query: 173 RFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLC 232
RF +I N +K+ PAL SRCTRFRF+PL+ + + V+E E + + + +LV+L
Sbjct: 186 RFCIIANYTHKLSPALLSRCTRFRFSPLKEEDIRVLVDQVVEKERVRIQPEAIDSLVQLS 245
Query: 233 NGDMRKALNILQSTHMAS-----------------QQITEEAVYLCTGNPLPKDIEQISY 275
GDMR+ALN+LQ+ H +S + IT+E +Y C P P DI+ I
Sbjct: 246 KGDMRRALNVLQACHASSIPLPMKNGPKAQPTSEHETITDETIYNCIAAPHPSDIKTIIT 305
Query: 276 WLLNESFADS-FKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYR 334
LL S S I +K KGLAL DI+ ++ + +I++P+ R+ M LADIE+R
Sbjct: 306 TLLTTSDVTSCLNTIKTLKSTKGLALADILTSISTELQRIEVPAATRIVWMEGLADIEWR 365
Query: 335 LSFGCNDKLQLGS 347
L+ G + +Q G+
Sbjct: 366 LAGGGGEMVQTGN 378
>gi|71986063|ref|NP_498750.2| Protein F44B9.8 [Caenorhabditis elegans]
gi|55584161|sp|P34429.3|RFC5_CAEEL RecName: Full=Probable replication factor C subunit 5; AltName:
Full=Activator 1 subunit 5
gi|351021183|emb|CCD63451.1| Protein F44B9.8 [Caenorhabditis elegans]
Length = 368
Score = 301 bits (770), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 149/311 (47%), Positives = 200/311 (64%), Gaps = 7/311 (2%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYG- 100
PWVEKYRP L ++ AH IV T+ + LPHLL YGPPGTGKT+T+LA AR++Y
Sbjct: 30 PWVEKYRPSKLDELVAHEQIVKTLTKFIENRTLPHLLFYGPPGTGKTTTVLAAARQMYSP 89
Query: 101 AQYHNMILELNASDDRGIDVVRQQIQDFAST---QSFSFGVKASV---KLVLLDEADAMT 154
+ +M+LELNASD+RGIDVVR I +FA T Q+FS KLV+LDEADAMT
Sbjct: 90 TKMASMVLELNASDERGIDVVRNTIVNFAQTKGLQAFSTSSNTGTVPFKLVILDEADAMT 149
Query: 155 KDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIE 214
KDAQ ALRRVIEKYT N RF +ICN + I+PA+QSRCTRFRFAPL+ + RL++++E
Sbjct: 150 KDAQNALRRVIEKYTDNVRFCIICNYLASIVPAIQSRCTRFRFAPLDQKLIVPRLEYIVE 209
Query: 215 AEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQIS 274
E L +T G AL+ + GDMR +N LQST M+ ++E VY C G P PK+++++
Sbjct: 210 TEQLKMTPDGKDALLIVSKGDMRTVINTLQSTAMSFDTVSENTVYQCIGQPTPKEMKEVV 269
Query: 275 YWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYR 334
LLN+ I G AL D++ + FVF + +P + ++ L ++E
Sbjct: 270 KTLLNDPSKKCMNTIQTKLFENGYALQDVITHLHDFVFTLDIPDEAMSAIITGLGEVEEN 329
Query: 335 LSFGCNDKLQL 345
LS GC+++ QL
Sbjct: 330 LSTGCSNETQL 340
>gi|171677049|ref|XP_001903476.1| hypothetical protein [Podospora anserina S mat+]
gi|170936592|emb|CAP61251.1| unnamed protein product [Podospora anserina S mat+]
Length = 389
Score = 300 bits (768), Expect = 8e-79, Method: Compositional matrix adjust.
Identities = 156/335 (46%), Positives = 220/335 (65%), Gaps = 27/335 (8%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP SL DV+ H+DI+ TI++ NRLPHLLLYGPPGTGKTSTILA+AR++YGA
Sbjct: 44 PWVEKYRPVSLDDVSGHQDILATINKFVDSNRLPHLLLYGPPGTGKTSTILALARRIYGA 103
Query: 102 Q-YHNMILELNASDDRGIDVVRQQIQDFAST-QSFSFGVK------ASVKLVLLDEADAM 153
+ M+LELNASDDRGIDVVR+QI+ FAST Q FS G A KL++LDEADAM
Sbjct: 104 ENMRQMVLELNASDDRGIDVVREQIKTFASTKQIFSLGASTSKTGLAGFKLIILDEADAM 163
Query: 154 TKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVI 213
T AQ ALRR++EKYT NTRF +I N +K+ PAL SRCTRFRF+PL+ + + VI
Sbjct: 164 TSTAQMALRRIMEKYTVNTRFCIIANYSHKLSPALLSRCTRFRFSPLKERDIRVLVDKVI 223
Query: 214 EAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMAS------------------QQITE 255
+ E + + ALV+L GDMR+ALN+LQ+ H +S + IT
Sbjct: 224 DEEHIKIKPEAADALVKLSKGDMRRALNVLQACHASSTPLQPKDTPKIPEDQIVRESITV 283
Query: 256 EAVYLCTGNPLPKDIEQISYWLLNES-FADSFKRISEMKMRKGLALVDIVREVTMFVFKI 314
+ +Y+C P P I++I LL+ S ++ +K+ +GLAL DI+ ++ + K+
Sbjct: 284 DTIYMCVAAPPPDVIKKIMNTLLSTSDVTACLAAVNSVKVTQGLALADIITALSEELVKL 343
Query: 315 KMPSDVRVRLMNDLADIEYRLSFGCNDKLQLGSII 349
++ +V + ++ LA +E+R++ G ++ +Q G+++
Sbjct: 344 EVKPEVMITWLDLLAQVEHRVAGGASEVIQTGAVV 378
>gi|380489807|emb|CCF36452.1| replication factor C [Colletotrichum higginsianum]
Length = 392
Score = 300 bits (767), Expect = 8e-79, Method: Compositional matrix adjust.
Identities = 157/339 (46%), Positives = 221/339 (65%), Gaps = 30/339 (8%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP SLADV+ H+DI+ TI++ NRLPHLLLYGPPGTGKTSTILA+AR++YGA
Sbjct: 43 PWVEKYRPVSLADVSGHQDILATINKFVDSNRLPHLLLYGPPGTGKTSTILALARRIYGA 102
Query: 102 Q-YHNMILELNASDDRGIDVVRQQIQDFAST-QSFSFGVKA---------SVKLVLLDEA 150
+ M+LELNASDDRGIDVVR+QI+ FAST Q F+ G A S KL++LDEA
Sbjct: 103 ENMRQMVLELNASDDRGIDVVREQIKTFASTKQIFTLGPSAKSGGGGSMASYKLIILDEA 162
Query: 151 DAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLK 210
DAMT AQ ALRR++EKYT NTRF +I N +K+ PAL SRCTRFRF+PL+ + +
Sbjct: 163 DAMTNTAQMALRRIMEKYTVNTRFCIIANYSHKLSPALLSRCTRFRFSPLKERDIRVLVD 222
Query: 211 HVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMAS------------------QQ 252
V+E E + + ALV+L GDMR+ALN+LQ+ H +S +
Sbjct: 223 KVVEEEHVKILPEATDALVKLSKGDMRRALNVLQACHASSTPLQAKGAPKTAESDIVREM 282
Query: 253 ITEEAVYLCTGNPLPKDIEQISYWLLNESFADS-FKRISEMKMRKGLALVDIVREVTMFV 311
I+ E +Y C P P + +I LL+ + S I+ +K+ +GLAL DI+ + +
Sbjct: 283 ISTETIYNCIAAPQPDAVREILDVLLSTTDVTSCLTTINTLKVARGLALADIITALAEQL 342
Query: 312 FKIKMPSDVRVRLMNDLADIEYRLSFGCNDKLQLGSIIS 350
+++ ++ ++ ++ LADIE+R++ G ++ +Q G+++
Sbjct: 343 ATLEVKPEIMIQWLDGLADIEHRVAGGGSEAVQTGAVVG 381
>gi|367007966|ref|XP_003688712.1| hypothetical protein TPHA_0P01200 [Tetrapisispora phaffii CBS 4417]
gi|357527022|emb|CCE66278.1| hypothetical protein TPHA_0P01200 [Tetrapisispora phaffii CBS 4417]
Length = 335
Score = 299 bits (766), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 154/328 (46%), Positives = 216/328 (65%), Gaps = 10/328 (3%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP SL +V DIV+T+ + +E +LPHLL YGPPGTGKTSTI+A+A+++YG
Sbjct: 12 PWVEKYRPSSLDEVYGQPDIVNTVRKFVAEGKLPHLLFYGPPGTGKTSTIIALAKEIYGK 71
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFAST-QSFSFGVKASVKLVLLDEADAMTKDAQFA 160
Y NM+LELNASDDRGIDVVR QI+DFAST Q FS G KL++LDEADAMT AQ A
Sbjct: 72 NYSNMVLELNASDDRGIDVVRNQIKDFASTRQIFSKG----FKLIILDEADAMTNAAQNA 127
Query: 161 LRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDV 220
LRR+IEKYTKNTRF ++ N K+ PAL SRCTRFRF P+ + R+ +V+ E L++
Sbjct: 128 LRRIIEKYTKNTRFCILANYAYKLTPALLSRCTRFRFQPIAIDALERRMNNVVLQEHLNI 187
Query: 221 TEGGLAALVRLCNGDMRKALNILQ----STHMASQQITEEAVYLCTGNPLPKDIEQISYW 276
+ AL+++ GDMR+ +N+LQ S A +IT E +Y C G P+D+++I
Sbjct: 188 GQEAKDALLKVSKGDMRRIMNVLQASKSSVDTADGEITREIIYECCGICRPEDVQKILKS 247
Query: 277 LLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSD-VRVRLMNDLADIEYRL 335
+L + F ++ + ++ KGLA +DI+ E+ + ++ ++ R + L++IEY +
Sbjct: 248 ILEDDFGTAYLTLKQICQAKGLASIDIIEELVALLECYELKNERTRQETLVCLSEIEYSI 307
Query: 336 SFGCNDKLQLGSIISTFTQARSAIVAAA 363
S GCN+K+ +II A A+A
Sbjct: 308 SKGCNNKIVQSAIIGAIKTAFEHETASA 335
>gi|320594193|gb|EFX06596.1| DNA replication factor c subunit [Grosmannia clavigera kw1407]
Length = 386
Score = 299 bits (765), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 162/351 (46%), Positives = 221/351 (62%), Gaps = 24/351 (6%)
Query: 26 GKNVIVSGTPPDIKAS-PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPG 84
GK + P + + S PWVEKYRP SL DV+ H+DI+ TI++ NRLPHLLLYGPPG
Sbjct: 27 GKRSTAANLPVEAEDSLPWVEKYRPVSLDDVSGHQDILATINKFVDSNRLPHLLLYGPPG 86
Query: 85 TGKTSTILAVARKLYGAQ-YHNMILELNASDDRGIDVVRQQIQDFASTQSF---SFGVKA 140
TGKTSTILA+AR++YGA+ M+LELNASDDRGIDVVR+QI+ FAST+ S G
Sbjct: 87 TGKTSTILALARRIYGAENTRQMVLELNASDDRGIDVVREQIKTFASTRQIFAASSGPAP 146
Query: 141 SV---KLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRF 197
S+ KL++LDEADAMT AQ ALRR++EKYT NTRF +I N +K+ PAL SRCTRFRF
Sbjct: 147 SLARYKLIVLDEADAMTNTAQMALRRIMEKYTANTRFCIIANYAHKLSPALLSRCTRFRF 206
Query: 198 APLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMAS------- 250
+PL+ + + VI E + + ALV L GDMR+ALN+LQ+ H +S
Sbjct: 207 SPLKEADIRVLVNKVIADEDVKIMSEAADALVTLSRGDMRRALNVLQACHASSTPLLPKD 266
Query: 251 --------QQITEEAVYLCTGNPLPKDIEQISYWLLNESFADS-FKRISEMKMRKGLALV 301
+ IT E +Y C P P I +I + LL S S ++ +K+ +GLAL
Sbjct: 267 APKTDIVRELITTETIYNCIAAPPPDAIREILHTLLETSDVTSCLDTVNALKVARGLALA 326
Query: 302 DIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDKLQLGSIISTF 352
DI+ + + K++ V V ++ LA+IE+R++ G + +Q G+++
Sbjct: 327 DIITALAEEITKVEASPKVMVTWLSGLAEIEHRVAGGAGETVQTGALVGVI 377
>gi|389625115|ref|XP_003710211.1| replication factor C subunit 3 [Magnaporthe oryzae 70-15]
gi|351649740|gb|EHA57599.1| replication factor C subunit 3 [Magnaporthe oryzae 70-15]
gi|440464833|gb|ELQ34198.1| replication factor C subunit 3 [Magnaporthe oryzae Y34]
Length = 404
Score = 299 bits (765), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 159/347 (45%), Positives = 217/347 (62%), Gaps = 41/347 (11%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP SLADV+ H+DI+ T+++ NRLPHLLLYGPPGTGKTSTILA+AR++YGA
Sbjct: 45 PWVEKYRPVSLADVSGHQDILATVNKFVDANRLPHLLLYGPPGTGKTSTILALARRIYGA 104
Query: 102 -QYHNMILELNASDDRGIDVVRQQIQDFAST-QSFSFGVKA------------------- 140
M+LELNASDDRGIDVVR+QI+ FAST Q F+ G
Sbjct: 105 DNVRQMVLELNASDDRGIDVVREQIKTFASTKQIFTLGSTKPAAASSSASTSNNPSATRP 164
Query: 141 --SVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFA 198
S KL++LDEADAMT AQ ALRR++EKYT NTRF +I N +K+ PAL SRCTRFRF+
Sbjct: 165 TPSYKLIILDEADAMTNTAQMALRRIMEKYTANTRFCIIANYAHKLSPALLSRCTRFRFS 224
Query: 199 PLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMAS-------- 250
PL+ + + V+E E +++ + ALVRL GDMR+ALN+LQ+ H +S
Sbjct: 225 PLKEADIRVLVDRVVEEETVNIRPDAVDALVRLARGDMRRALNVLQACHASSTPLREKGA 284
Query: 251 ---------QQITEEAVYLCTGNPLPKDIEQISYWLLNES-FADSFKRISEMKMRKGLAL 300
IT E +Y C P P+ I++I LL S I+ +K +GLAL
Sbjct: 285 AADDKPVVRDTITVETIYNCIAAPPPEAIKEILDTLLATSDVVSCLGTINALKTTRGLAL 344
Query: 301 VDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDKLQLGS 347
DI+ ++ + K+++ +V + ++ LA+IE+R++ G + +Q G+
Sbjct: 345 ADIITALSEELVKLEVKPEVMITWLDGLAEIEHRVAGGAGEAVQTGA 391
>gi|302413517|ref|XP_003004591.1| replication factor C subunit 3 [Verticillium albo-atrum VaMs.102]
gi|261357167|gb|EEY19595.1| replication factor C subunit 3 [Verticillium albo-atrum VaMs.102]
Length = 391
Score = 298 bits (764), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 156/335 (46%), Positives = 218/335 (65%), Gaps = 29/335 (8%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP +LADV+ H DI+ TI++ +NRLPHLLLYGPPGTGKTSTILA+AR++YG
Sbjct: 43 PWVEKYRPATLADVSGHHDILATINKFVDKNRLPHLLLYGPPGTGKTSTILALARRIYGP 102
Query: 102 Q-YHNMILELNASDDRGIDVVRQQIQDFAST-QSFSFGVKASV--------KLVLLDEAD 151
+ M+LELNASDDRGIDVVR+QI+ FAST Q F+ S KL++LDEAD
Sbjct: 103 ENVRQMVLELNASDDRGIDVVREQIKTFASTKQIFTSARSGSGSSSGAAGYKLIVLDEAD 162
Query: 152 AMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKH 211
AMT AQ ALRR++EKYT NTRF +I N +K+ PAL SRCTRFRF+PL+ + +
Sbjct: 163 AMTNTAQMALRRIMEKYTANTRFCIIANYAHKLSPALLSRCTRFRFSPLKEGDIRVLVDR 222
Query: 212 VIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQ------------------I 253
V++ EG+ + ALVRL GDMR+ALN+LQ+ H +S I
Sbjct: 223 VVDEEGVRIRPDATDALVRLAKGDMRRALNVLQACHASSTPLRGPGEPKVPDAQIVRDLI 282
Query: 254 TEEAVYLCTGNPLPKDIEQISYWLLNESFADS-FKRISEMKMRKGLALVDIVREVTMFVF 312
T E +Y C P P +++I LL+ + S I+ +K+ +GLAL DI+ ++ ++
Sbjct: 283 TTETIYQCIAAPPPDAVQEILQALLSTADVTSCLSTINSLKVARGLALADIITSLSEEIY 342
Query: 313 KIKMPSDVRVRLMNDLADIEYRLSFGCNDKLQLGS 347
K+++ +V + ++ LA+IE+R++ G + +Q G+
Sbjct: 343 KLEVKPEVMISWLDGLANIEHRVAGGAGEAVQTGA 377
>gi|390346342|ref|XP_795505.3| PREDICTED: replication factor C subunit 5-like [Strongylocentrotus
purpuratus]
Length = 259
Score = 298 bits (763), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 146/252 (57%), Positives = 182/252 (72%), Gaps = 4/252 (1%)
Query: 39 KASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKL 98
K PWVEKYRP SL D+ +H +I++TI + ++RLPHLL YGPPGTGKTSTILAVA++L
Sbjct: 8 KNLPWVEKYRPNSLDDLISHTEIINTIQKFIKQDRLPHLLFYGPPGTGKTSTILAVAKQL 67
Query: 99 YG-AQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDA 157
Y ++++M+LELNASDDRGI +VR I +FAST++ K+ KLV+LDEADAMT DA
Sbjct: 68 YAPKEFNSMVLELNASDDRGIGIVRGSILNFASTRTI---FKSGFKLVILDEADAMTNDA 124
Query: 158 QFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEG 217
Q ALRRVIEK+T+NTRF ICN ++KIIPALQSRCTRFR
Sbjct: 125 QNALRRVIEKFTENTRFCFICNYLSKIIPALQSRCTRFRXXXXXXXXXXXXXXXXXIHTY 184
Query: 218 LDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWL 277
+D+TE G AL+ L GDMR+ +NILQST MA +++TEE VYLCTG+PL DIE I W+
Sbjct: 185 VDMTEDGKKALITLAKGDMRRVINILQSTSMAHEKVTEENVYLCTGHPLRTDIENIVNWM 244
Query: 278 LNESFADSFKRI 289
LNE F +F RI
Sbjct: 245 LNEDFTAAFNRI 256
>gi|378727708|gb|EHY54167.1| replication factor C subunit 3/5 [Exophiala dermatitidis
NIH/UT8656]
Length = 408
Score = 298 bits (763), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 158/341 (46%), Positives = 216/341 (63%), Gaps = 33/341 (9%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP +L DV+ H+DI+ TI+R +N+LPHLLLYGPPGTGKTSTILA+AR++YG
Sbjct: 47 PWVEKYRPNTLDDVSGHKDILATINRFIEQNKLPHLLLYGPPGTGKTSTILALARQIYGP 106
Query: 102 Q-YHNMILELNASDDRGIDVVRQQIQDFAST-QSFS-----------FGVKASVKLVLLD 148
+ M+LELNASDDRGIDVVR+QI+ FAST Q FS FG+ A KL++LD
Sbjct: 107 KNMRQMVLELNASDDRGIDVVREQIKTFASTKQIFSASTQQGPSGAKFGLGA-FKLIILD 165
Query: 149 EADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTER 208
EADAMT AQ ALRR++EKYT NTRF +I N +K+ PAL SRCTRFRF+PL+ +
Sbjct: 166 EADAMTSAAQMALRRIMEKYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKKEDIRRL 225
Query: 209 LKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQ---------------- 252
+ HVI E +++ + +LV L GDMR+ALN+LQ+ H S+
Sbjct: 226 VDHVIAEEKVNIAPDAVESLVELSKGDMRRALNVLQACHAGSRPLPIRGQPPVKDADVKY 285
Query: 253 --ITEEAVYLCTGNPLPKDIEQISYWLLNE-SFADSFKRISEMKMRKGLALVDIVREVTM 309
IT + +Y C P P+DI I +L+ I+ +K +GLAL DI+ +
Sbjct: 286 ELITNDTIYNCIAAPHPEDIRLIMTTMLSTPDMTSCMNTINALKSSRGLALADILTALAE 345
Query: 310 FVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDKLQLGSIIS 350
+ +++ + RV + LA+IEYRL+ G ++ +Q G ++
Sbjct: 346 ELQNLEVSAATRVTWLQGLAEIEYRLAGGGSESVQTGGMVG 386
>gi|322698624|gb|EFY90393.1| activator 1 subunit 3 [Metarhizium acridum CQMa 102]
Length = 921
Score = 296 bits (757), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 159/344 (46%), Positives = 225/344 (65%), Gaps = 29/344 (8%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PW+EKYRP +L DV+ H+DI+ TI++ NRLPHLLLYGPPGTGKTSTILA+AR++YGA
Sbjct: 44 PWIEKYRPATLDDVSGHQDILATINKFVDSNRLPHLLLYGPPGTGKTSTILALARRIYGA 103
Query: 102 -QYHNMILELNASDDRGIDVVRQQIQDFAST-QSFSFGVKA-----SVKLVLLDEADAMT 154
M+LELNASDDRGIDVVR+QI+ FAST Q F+ G A KL++LDEADAMT
Sbjct: 104 ANMRQMVLELNASDDRGIDVVREQIKTFASTKQIFTMGASAKSSIAGFKLIILDEADAMT 163
Query: 155 KDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIE 214
AQ ALRR++EKYT NTRF +I N +K+ PAL SRCTRFRF+PL+ + ++ V+E
Sbjct: 164 NTAQMALRRIMEKYTVNTRFCIIANYSHKLSPALLSRCTRFRFSPLKEGDIRVLVEKVVE 223
Query: 215 AEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMAS------------------QQITEE 256
E + + + AL++L GDMR+ALN+LQ+ H +S + IT E
Sbjct: 224 EENVQIGGEAVDALIKLSKGDMRRALNVLQACHASSTPLQAKNAPKIPESEIKREMITTE 283
Query: 257 AVYLCTGNPLPKDIEQISYWLLNES-FADSFKRISEMKMRKGLALVDIVREVTMFVFKIK 315
+Y C P P I++I LLN S ++ +K+ +GLAL DI+ ++ + K++
Sbjct: 284 TIYNCIAAPPPDAIKEIVTTLLNTSDVMSCLSTMNALKVTRGLALADIITALSEELVKLE 343
Query: 316 MPSDVRVRLMNDLADIEYRLSFGCNDKLQLGSIISTF---TQAR 356
+ +V + ++ LAD+E+R++ G ++ +Q G+++ F QAR
Sbjct: 344 VSPEVMISWLDGLADVEHRVAGGGSETVQTGAVVGVFPSTCQAR 387
>gi|385301010|gb|EIF45243.1| rfc3p [Dekkera bruxellensis AWRI1499]
Length = 330
Score = 296 bits (757), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 155/319 (48%), Positives = 210/319 (65%), Gaps = 9/319 (2%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRPQ+L V ++ + TI + + R+PHLL YGPPG+GKTSTI+A+AR++YG
Sbjct: 11 PWVEKYRPQNLDQVYGQQETIQTIRKFAQDGRIPHLLFYGPPGSGKTSTIIALAREIYGK 70
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFAST-QSFSFGVKASVKLVLLDEADAMTKDAQFA 160
Y NM+LELNASDDRGID VR QI++FAST Q FS G KLV+LDEADAMT AQ A
Sbjct: 71 NYRNMVLELNASDDRGIDXVRDQIKNFASTRQIFSSG----FKLVILDEADAMTNTAQNA 126
Query: 161 LRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDV 220
LRR+IEKYTKNTRF ++ N +KI PAL SRCTRFRF+PL + ER+ VI+ E L +
Sbjct: 127 LRRIIEKYTKNTRFCILANYAHKINPALMSRCTRFRFSPLAISAIEERVDTVIKEEKLKI 186
Query: 221 TEGGLAALVRLCNGDMRKALNILQSTHMA----SQQITEEAVYLCTGNPLPKDIEQISYW 276
+ LV L GDMRKALN+LQ+ A I + +Y C G P PK IE I
Sbjct: 187 EKXAEKCLVALSKGDMRKALNVLQACAAALDKPEDTIXVDMIYECVGAPRPKSIEVILNA 246
Query: 277 LLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLS 336
++ + DS+ +++++ +GLAL+D++ + K ++ R++++ L DIEY +S
Sbjct: 247 IMERDWTDSYSVMNKIRKTEGLALIDLIEGFMDILAKYELKPLTRIKMIQGLGDIEYGIS 306
Query: 337 FGCNDKLQLGSIISTFTQA 355
G +DK+Q ++I A
Sbjct: 307 KGGSDKIQSTAVIGCIKNA 325
>gi|149238019|ref|XP_001524886.1| activator 1 40 kDa subunit [Lodderomyces elongisporus NRRL YB-4239]
gi|146451483|gb|EDK45739.1| activator 1 40 kDa subunit [Lodderomyces elongisporus NRRL YB-4239]
Length = 377
Score = 296 bits (757), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 151/316 (47%), Positives = 209/316 (66%), Gaps = 4/316 (1%)
Query: 44 VEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQY 103
VEKYRP++L +V DIV+T+ R +LPHLL YGPPGTGKTSTI+A+AR++YG Y
Sbjct: 55 VEKYRPENLEEVYGQGDIVNTVRRFVETGKLPHLLFYGPPGTGKTSTIVALAREIYGPNY 114
Query: 104 HNMILELNASDDRGIDVVRQQIQDFAST-QSFSFGVKASVKLVLLDEADAMTKDAQFALR 162
NM+LELNASDDRGIDVVR QI+ FAST Q F+ KL++LDEADAMT AQ +LR
Sbjct: 115 KNMVLELNASDDRGIDVVRNQIKSFASTRQIFTSASSPQFKLIILDEADAMTSVAQNSLR 174
Query: 163 RVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTE 222
R+IEK+TKN RF ++ N +K+ PAL SRCTRFRF P++ + R+ +VI E +D+T
Sbjct: 175 RIIEKFTKNCRFCILANYSHKLNPALISRCTRFRFHPIDEEAIRSRINNVIIKEKVDITP 234
Query: 223 GGLAALVRLCNGDMRKALNILQSTHMA---SQQITEEAVYLCTGNPLPKDIEQISYWLLN 279
L AL+ L GDMR++LN+LQ+ A + I + +Y C G P P+DIE +L
Sbjct: 235 DALNALLHLSQGDMRRSLNVLQACKAAVNDDETIDIDMIYNCVGAPHPQDIEACLDSILK 294
Query: 280 ESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGC 339
+ + ++ +++ K GLALVD++ + K ++ + RV + L+DIEY +S G
Sbjct: 295 DDWTTAYLTLTKYKTVNGLALVDLITGFIEILNKYELKPENRVYYLKGLSDIEYGISKGG 354
Query: 340 NDKLQLGSIISTFTQA 355
ND++Q +II QA
Sbjct: 355 NDRIQSSAIIGVIKQA 370
>gi|429329431|gb|AFZ81190.1| replication factor C subunit 3, putative [Babesia equi]
Length = 345
Score = 295 bits (755), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 149/330 (45%), Positives = 216/330 (65%), Gaps = 10/330 (3%)
Query: 40 ASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLY 99
A+PWVEKYRP++ D+ +H DI+ T+ + +LPHLL +GPPGTGKTSTI+A++R LY
Sbjct: 6 AAPWVEKYRPETFEDIISHEDIMSTLMIFAEKGQLPHLLFHGPPGTGKTSTIMAISRYLY 65
Query: 100 GAQYHNMILELNASDDRGIDVVRQQIQDFA-STQSFS------FGVKASVKLVLLDEADA 152
G Q + +LELNASD+RGID VR+QI+ F+ +T +FS +K ++KL++LDEAD
Sbjct: 66 GNQKNGFVLELNASDERGIDTVREQIKAFSETTNTFSNTSAQDSNIKTTLKLIILDEADQ 125
Query: 153 MTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHV 212
MT AQ ALRR++E Y+ N RF LICN +NKIIP +QSRCT FRF PL+P V +R++ +
Sbjct: 126 MTNAAQNALRRIMEIYSSNVRFCLICNFMNKIIPPIQSRCTGFRFQPLKPDFVRKRIRDI 185
Query: 213 IEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQ---ITEEAVYLCTGNPLPKD 269
E E L +++ GL L+++ GDMR+ LN LQ T M+ + I + +G P +
Sbjct: 186 AEMENLKLSDCGLDTLIQIGQGDMRRVLNCLQVTAMSYSKGNVIDANLILTTSGMPQNSE 245
Query: 270 IEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLA 329
IE + L+ SF +S ++E+ KG ++ DIV+ + + KI P+ ++L+ LA
Sbjct: 246 IEHLLQTLMQCSFKESVDELNELHHLKGYSVEDIVKGLYKAILKIDWPNVPIIQLIMRLA 305
Query: 330 DIEYRLSFGCNDKLQLGSIISTFTQARSAI 359
DIE RLS G +Q+ SI+S F + R I
Sbjct: 306 DIEERLSAGATASIQIASIVSAFAEVRYEI 335
>gi|317036017|ref|XP_001397471.2| replication factor C subunit 3 [Aspergillus niger CBS 513.88]
gi|350633381|gb|EHA21746.1| hypothetical protein ASPNIDRAFT_49138 [Aspergillus niger ATCC 1015]
Length = 396
Score = 294 bits (752), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 164/340 (48%), Positives = 219/340 (64%), Gaps = 32/340 (9%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP +L DV+ H+DI+ TI++ NRLPHLLLYGPPGTGKTSTILA+AR++YGA
Sbjct: 45 PWVEKYRPNTLEDVSGHQDILATINKFVEANRLPHLLLYGPPGTGKTSTILALARRIYGA 104
Query: 102 Q-YHNMILELNASDDRGIDVVRQQIQDFAST-QSFSFGVK---------ASVKLVLLDEA 150
+ M+LELNASDDRGIDVVR+QI+ FAST Q FS AS KL++LDEA
Sbjct: 105 KNMRQMVLELNASDDRGIDVVREQIKTFASTKQIFSMAPSSTSTSSSTLASYKLIILDEA 164
Query: 151 DAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLK 210
DAMT AQ ALRR++EKYT NTRF +I N +K+ PAL SRCTRFRF+PL+ + +
Sbjct: 165 DAMTATAQMALRRIMEKYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKEADIRVLVD 224
Query: 211 HVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMAS-------------------- 250
VIE E +++ + +LVRL GDMR+ALN+LQ+ +S
Sbjct: 225 IVIEKEQVNIQPEAVDSLVRLSKGDMRRALNVLQACFASSIPLPMKNAPKDQEAKEKPEA 284
Query: 251 QQITEEAVYLCTGNPLPKDIEQISYWLLNESFADS-FKRISEMKMRKGLALVDIVREVTM 309
+ IT E +Y C P P DIE+I LL S S I+ +K KGLAL DI+ +
Sbjct: 285 EVITNETIYDCIAAPHPSDIEEIMTTLLATSDVTSCLSTINTLKANKGLALADILAALGD 344
Query: 310 FVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDKLQLGSII 349
+ ++++P+ RV + LA+IE+RL+ G ++ +Q G ++
Sbjct: 345 QLQRLEVPAQTRVTWLEGLAEIEWRLAGGGSESMQTGGLV 384
>gi|296421944|ref|XP_002840523.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295636741|emb|CAZ84714.1| unnamed protein product [Tuber melanosporum]
Length = 387
Score = 293 bits (751), Expect = 7e-77, Method: Compositional matrix adjust.
Identities = 157/331 (47%), Positives = 219/331 (66%), Gaps = 26/331 (7%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP +L DV+ H DI+ TI++ NRLPHLL YGPPGTGKTSTILA+AR +YGA
Sbjct: 44 PWVEKYRPDTLNDVSGHEDILTTINKFVQTNRLPHLLFYGPPGTGKTSTILALARHIYGA 103
Query: 102 QYHNM---ILELNASDDRGIDVVRQQIQDFAST-QSFSFGVK-----ASVKLVLLDEADA 152
HN+ +LELNASDDRGI+VVR+QI+ FAST Q F K S KL++LDEADA
Sbjct: 104 --HNIRQQVLELNASDDRGIEVVREQIKTFASTKQIFGASTKTDGELGSFKLIILDEADA 161
Query: 153 MTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHV 212
MT AQ ALRR++EKYT NTRF +I N +K+ AL SRCTRFRF+PL + R+ HV
Sbjct: 162 MTSTAQNALRRIMEKYTANTRFCIIANYTHKLNAALLSRCTRFRFSPLPIDALRRRVDHV 221
Query: 213 IEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMAS---------------QQITEEA 257
I+AE + +T + AL++L GDMR++LN+LQ+ H +S + ITE
Sbjct: 222 IDAEKVKITPSAVDALLQLSRGDMRRSLNVLQACHASSTPLDDKGRPDPTAEREDITETH 281
Query: 258 VYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMP 317
+Y C P P+D++ I LL+ S + I ++K +KGLAL D++ ++ + ++++P
Sbjct: 282 IYDCIAAPHPEDVQIILKTLLSSDITTSLRTIIDIKTKKGLALADLLSSLSDELERLEVP 341
Query: 318 SDVRVRLMNDLADIEYRLSFGCNDKLQLGSI 348
R+ M LA++E+R+ G ++ +Q G++
Sbjct: 342 KQTRILWMEGLAEVEWRVGSGGSEGIQTGAL 372
>gi|123505671|ref|XP_001329029.1| ATPase, AAA family protein [Trichomonas vaginalis G3]
gi|121911979|gb|EAY16806.1| ATPase, AAA family protein [Trichomonas vaginalis G3]
Length = 325
Score = 293 bits (750), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 146/321 (45%), Positives = 215/321 (66%), Gaps = 4/321 (1%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP L DV +H + TI + +N LPHL +GPPGTGKT+T +A++ +LYG
Sbjct: 8 PWVEKYRPSKLDDVVSHEACISTIKKFIDKNCLPHLCFHGPPGTGKTTTAIAISHQLYGN 67
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFAL 161
+LELNASD+RGID VR +I+DFAS++S FG K +KL++LDE+DAMT AQ AL
Sbjct: 68 DTSMSVLELNASDERGIDTVRMRIKDFASSRSL-FGPK--IKLIILDESDAMTGAAQAAL 124
Query: 162 RRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVT 221
RR++E++T N RF LICN K+IPAL+SRCT FRF PL + L+H+ +AE L++
Sbjct: 125 RRIMEQFTSNVRFILICNYPEKLIPALRSRCTEFRFQPLPDEDAAKFLRHIADAEKLNMD 184
Query: 222 EGGLAALVRLCNGDMRKALNILQSTHMA-SQQITEEAVYLCTGNPLPKDIEQISYWLLNE 280
EGGL AL++L GD+R+++N++Q+T M+ ++ ITE VY C+G PLP+D+ + L+N+
Sbjct: 185 EGGLKALLKLGIGDLRRSINLMQTTSMSNTKDITEANVYRCSGYPLPEDMARTLEQLINK 244
Query: 281 SFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCN 340
++ +++ GL+L+D++RE+ V ++ P V L+ LA IE L+ G
Sbjct: 245 PLDEALNTLNDQVFNNGLSLLDVIRELHSQVVLMEFPPLVLANLIERLAQIERCLAEGSP 304
Query: 341 DKLQLGSIISTFTQARSAIVA 361
+++Q +I + F R I A
Sbjct: 305 ERVQSAAIAAAFQMLRMEIEA 325
>gi|145498359|ref|XP_001435167.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124402297|emb|CAK67770.1| unnamed protein product [Paramecium tetraurelia]
Length = 340
Score = 293 bits (749), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 144/323 (44%), Positives = 221/323 (68%), Gaps = 9/323 (2%)
Query: 39 KASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKL 98
K PW+EKYRP +L +V +H +IV TI + +NRLP+LLLYGPPGTGKTSTI+A+A+++
Sbjct: 13 KNIPWIEKYRPSTLDEVISHEEIVATIKKFNEKNRLPNLLLYGPPGTGKTSTIIALAKQI 72
Query: 99 YGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFG--VKASVKLVLLDEADAMTKD 156
Y +Y+ M+LELNASD+RGI+ VR+ I+ FA +QSF+F S+KLV+LDEADAMT
Sbjct: 73 YQNKYNQMVLELNASDERGINTVRETIKGFAESQSFTFTKDKNTSIKLVILDEADAMTAA 132
Query: 157 AQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAE 216
AQFALRR+IEKY K TRF ICN +++IIPA+QSRCTRF+F + + R+K++ E E
Sbjct: 133 AQFALRRIIEKYAKTTRFCFICNHISQIIPAIQSRCTRFKFKQISLDVASSRIKYICENE 192
Query: 217 GLDVTEGGLAALVRLCNGDMRKALNI-----LQSTHMASQQITEEAVYLCTGNPLPKDIE 271
+ + E + ++ LC+GDMR+ +N+ L +++ + I + VY TG P I+
Sbjct: 193 SIPLNEQAIKSVFELCSGDMRRVVNMLQSLSLSTSNSNLEVINSQYVYQFTGMAHPDLIK 252
Query: 272 QISYWLLNES-FADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSD-VRVRLMNDLA 329
QI +L+N+S ++ +I + +G++L ++ E++ + + + +D + ++ +A
Sbjct: 253 QIMEYLMNQSEIQKTYLKIKTILNEQGISLQLLLTELSTQLLGLNVLNDKQKCNVIERMA 312
Query: 330 DIEYRLSFGCNDKLQLGSIISTF 352
++EYRLS CND++QL S+I F
Sbjct: 313 ELEYRLSICCNDQVQLLSLIGIF 335
>gi|85110311|ref|XP_963397.1| activator 1 subunit 3 [Neurospora crassa OR74A]
gi|28881264|emb|CAD70523.1| related to replication factor C chain Rfc3 [Neurospora crassa]
gi|28925076|gb|EAA34161.1| activator 1 subunit 3 [Neurospora crassa OR74A]
Length = 389
Score = 293 bits (749), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 153/338 (45%), Positives = 213/338 (63%), Gaps = 27/338 (7%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP SL+DV+ +DI+ TI++ NRLPHLL YGPPGTGKTST+LA+AR++YGA
Sbjct: 44 PWVEKYRPVSLSDVSGQQDILATINKFVDTNRLPHLLFYGPPGTGKTSTVLALARQIYGA 103
Query: 102 -QYHNMILELNASDDRGIDVVRQQIQDFASTQSF-------SFGVKASVKLVLLDEADAM 153
M+LELNASDDRGIDVVR+QI+ FAST+ S A KL++LDEADAM
Sbjct: 104 ANMRQMVLELNASDDRGIDVVREQIKTFASTKQIFSLGSSSSRSGLAGFKLIILDEADAM 163
Query: 154 TKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVI 213
T AQ ALRR++EKYT NTRF +I N +K+ PAL SRCTRFRF+PL+ + + VI
Sbjct: 164 TSTAQMALRRIMEKYTANTRFCIIANYSHKLSPALLSRCTRFRFSPLKEKDIRVLVDKVI 223
Query: 214 EAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMAS------------------QQITE 255
+ E + + ALVRL GDMR+ALN+LQ+ H +S + IT
Sbjct: 224 DEENVKILPDATDALVRLSKGDMRRALNVLQACHASSTPLQPKNAPKIAEKDIVRETITI 283
Query: 256 EAVYLCTGNPLPKDIEQISYWLLNES-FADSFKRISEMKMRKGLALVDIVREVTMFVFKI 314
+Y C P P I++I LL+ S I+ +K+ +GLAL DI+ ++ + K+
Sbjct: 284 RTIYDCVAAPPPDAIKKILSTLLSTSDVTTCLSTINTLKVAQGLALADIITALSEEIVKL 343
Query: 315 KMPSDVRVRLMNDLADIEYRLSFGCNDKLQLGSIISTF 352
++ V + +++LA IE+R++ G + +Q G+++
Sbjct: 344 EVKPQVMITWLDELAKIEHRVASGAGEVIQTGAVVGAI 381
>gi|336467972|gb|EGO56135.1| hypothetical protein NEUTE1DRAFT_130196 [Neurospora tetrasperma
FGSC 2508]
gi|350289788|gb|EGZ71013.1| P-loop containing nucleoside triphosphate hydrolase protein
[Neurospora tetrasperma FGSC 2509]
Length = 389
Score = 293 bits (749), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 153/338 (45%), Positives = 213/338 (63%), Gaps = 27/338 (7%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYG- 100
PWVEKYRP SL+DV+ +DI+ TI++ NRLPHLL YGPPGTGKTST+LA+AR++YG
Sbjct: 44 PWVEKYRPVSLSDVSGQQDILATINKFVDTNRLPHLLFYGPPGTGKTSTVLALARQIYGT 103
Query: 101 AQYHNMILELNASDDRGIDVVRQQIQDFASTQSF-------SFGVKASVKLVLLDEADAM 153
A M+LELNASDDRGIDVVR+QI+ FAST+ S A KL++LDEADAM
Sbjct: 104 ANMRQMVLELNASDDRGIDVVREQIKTFASTKQIFSLGSSSSRSGLAGFKLIILDEADAM 163
Query: 154 TKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVI 213
T AQ ALRR++EKYT NTRF +I N +K+ PAL SRCTRFRF+PL+ + + VI
Sbjct: 164 TSTAQMALRRIMEKYTANTRFCIIANYSHKLSPALLSRCTRFRFSPLKEKDIRVLVDKVI 223
Query: 214 EAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMAS------------------QQITE 255
+ E + + ALVRL GDMR+ALN+LQ+ H +S + IT
Sbjct: 224 DEENVKILPDATDALVRLSKGDMRRALNVLQACHASSTPLQPKNAPKIAEKDIVRETITI 283
Query: 256 EAVYLCTGNPLPKDIEQISYWLLNES-FADSFKRISEMKMRKGLALVDIVREVTMFVFKI 314
+Y C P P I++I LL+ S I+ +K+ +GLAL DI+ ++ + K+
Sbjct: 284 RTIYDCVAAPPPDAIKKILSTLLSTSDVTTCLSTINTLKVAQGLALADIITALSEEIIKL 343
Query: 315 KMPSDVRVRLMNDLADIEYRLSFGCNDKLQLGSIISTF 352
++ V + +++LA IE+R++ G + +Q G+++
Sbjct: 344 EVKPQVMITWLDELAKIEHRVASGAGEVIQTGAVVGAI 381
>gi|169771859|ref|XP_001820399.1| replication factor C subunit 3 [Aspergillus oryzae RIB40]
gi|83768258|dbj|BAE58397.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|391874706|gb|EIT83551.1| replication factor C, subunit RFC5 [Aspergillus oryzae 3.042]
Length = 398
Score = 291 bits (746), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 160/336 (47%), Positives = 219/336 (65%), Gaps = 28/336 (8%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP +L DV+ H+DI+ TI+R NRLPHLLLYGPPGTGKTSTILA+AR++YG+
Sbjct: 44 PWVEKYRPNTLDDVSGHQDILATINRFVDANRLPHLLLYGPPGTGKTSTILALARRIYGS 103
Query: 102 Q-YHNMILELNASDDRGIDVVRQQIQDFAST-QSFSFGVK--------ASVKLVLLDEAD 151
+ M+LELNASDDRGIDVVR+QI+ FAST Q FS + AS KL++LDEAD
Sbjct: 104 KNMRQMVLELNASDDRGIDVVREQIKTFASTKQIFSMAPQPTSGGSSLASYKLIILDEAD 163
Query: 152 AMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKH 211
AMT AQ ALRR++EKYT NTRF +I N +K+ PAL SRCTRFRF+PL+ + +
Sbjct: 164 AMTATAQMALRRIMEKYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKEQDIRSLVDL 223
Query: 212 VIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMAS-----------------QQIT 254
VIE E + + + +LV+L GDMR+ALN+LQ+ H +S + IT
Sbjct: 224 VIEKEEVKIQPEAVDSLVKLSKGDMRRALNVLQACHASSIPLPVKNAPKDQPRPEPELIT 283
Query: 255 EEAVYLCTGNPLPKDIEQISYWLLNESFADS-FKRISEMKMRKGLALVDIVREVTMFVFK 313
+Y C P P DI++I LL S S ++ +K KGLAL DI+ + + +
Sbjct: 284 NGTIYDCIAAPHPADIQEIMTTLLATSDVTSCLSTVNTLKSNKGLALADILAALGEQLQQ 343
Query: 314 IKMPSDVRVRLMNDLADIEYRLSFGCNDKLQLGSII 349
+++P+ R+ + LA+IE+RL+ G ++ +Q G ++
Sbjct: 344 LEVPAQTRITWLEGLAEIEFRLAGGGSEAIQTGGLV 379
>gi|68490424|ref|XP_710962.1| hypothetical protein CaO19.10723 [Candida albicans SC5314]
gi|46432227|gb|EAK91721.1| hypothetical protein CaO19.10723 [Candida albicans SC5314]
Length = 361
Score = 291 bits (745), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 152/331 (45%), Positives = 214/331 (64%), Gaps = 19/331 (5%)
Query: 44 VEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA-Q 102
VEKYRP SL +V ++IVDT+ + +LPHLL YGPPGTGKTSTI+A+A+++YGA
Sbjct: 26 VEKYRPDSLEEVKGQQEIVDTVRKFVETGKLPHLLFYGPPGTGKTSTIIALAKEIYGATN 85
Query: 103 YHNMILELNASDDRGIDVVRQQIQDFAST-QSFSFGVKASV-----KLVLLDEADAMTKD 156
Y NMILELNASDDRGIDVVR QI++FAST Q F+ + KL++LDEADAMT
Sbjct: 86 YKNMILELNASDDRGIDVVRNQIKNFASTRQIFTKNTSQTASNNQFKLIILDEADAMTNV 145
Query: 157 AQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAE 216
AQ +LRRVIEK+TKN RF ++ N +K+ PAL SRCTRFRF P++ + +RL VI E
Sbjct: 146 AQNSLRRVIEKFTKNCRFCILANYSHKLNPALISRCTRFRFTPIDISAIKDRLNTVIIKE 205
Query: 217 GLDVTEGGLAALVRLCNGDMRKALNILQSTHM------------ASQQITEEAVYLCTGN 264
++++ + AL++L NGDMR+ALN+LQS A+ +I + +Y C G
Sbjct: 206 NVNISPEAIDALLKLSNGDMRRALNVLQSCKAALGDEEKEEDGHANDEIDVDMIYDCVGA 265
Query: 265 PLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRL 324
P P+D+E +L + + ++ +++ K KGLAL+D++ + K+ R+ +
Sbjct: 266 PHPQDVETCLDSILKDDWTTAYLTLNKYKTIKGLALIDLITGFIEILNNYKLKPKTRLEI 325
Query: 325 MNDLADIEYRLSFGCNDKLQLGSIISTFTQA 355
+ L+DIEY +S G NDK+Q +II A
Sbjct: 326 LKGLSDIEYGISKGGNDKIQTSAIIGVIKDA 356
>gi|345560437|gb|EGX43562.1| hypothetical protein AOL_s00215g298 [Arthrobotrys oligospora ATCC
24927]
Length = 393
Score = 291 bits (744), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 153/334 (45%), Positives = 211/334 (63%), Gaps = 31/334 (9%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYG- 100
PWVEKYRPQSL DV+ H DI+ TI++ ++N+LPHLL YGPPGTGKTSTILA+AR++Y
Sbjct: 42 PWVEKYRPQSLDDVSGHEDILTTINKFIAQNKLPHLLFYGPPGTGKTSTILALARRIYNT 101
Query: 101 ---AQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVK----------ASVKLVLL 147
A + +LELNASDDRGIDVVR+QI+ FAST+ K A KL++L
Sbjct: 102 KSEAALRHHVLELNASDDRGIDVVREQIKTFASTKQIFSSAKLEPSNTTSSIAQFKLIIL 161
Query: 148 DEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTE 207
DEADAMT AQ ALRR++EKYT N RF +I N +K+ AL SRCTRFRF+PL +
Sbjct: 162 DEADAMTSTAQNALRRIMEKYTSNVRFCIIANYTHKLNAALLSRCTRFRFSPLPIPALRR 221
Query: 208 RLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQ--------------- 252
R++HVI++E + + + + AL+ L GDMR+ALN+LQ+ S
Sbjct: 222 RVEHVIDSENVRIDDTAVDALLHLSRGDMRRALNVLQACFAGSTPLDKNGVALSGPDVQR 281
Query: 253 --ITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMF 310
ITE ++Y C P P+DI+ I LL E + ++ +K KGLAL DI++ V
Sbjct: 282 DLITETSIYDCVAAPHPEDIQAIMNTLLTEDITTALITVNRIKTLKGLALTDILQVVAEE 341
Query: 311 VFKIKMPSDVRVRLMNDLADIEYRLSFGCNDKLQ 344
+ ++++ VRV + +A+IE R++ G N+ +Q
Sbjct: 342 LCRLEVKPHVRVLWLAGMAEIEGRVAAGGNESIQ 375
>gi|358368166|dbj|GAA84783.1| activator 1 subunit 3 [Aspergillus kawachii IFO 4308]
Length = 402
Score = 290 bits (743), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 164/347 (47%), Positives = 219/347 (63%), Gaps = 38/347 (10%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP +L DV+ H+DI+ TI++ NRLPHLLLYGPPGTGKTSTILA+AR++YGA
Sbjct: 45 PWVEKYRPNTLEDVSGHQDILATINKFVEANRLPHLLLYGPPGTGKTSTILALARRIYGA 104
Query: 102 Q-YHNMILELNASDDRGIDVVRQQIQDFAST-QSFSFGVK-----------ASVKLVLLD 148
+ M+LELNASDDRGIDVVR+QI+ FAST Q FS AS KL++LD
Sbjct: 105 KNMRQMVLELNASDDRGIDVVREQIKTFASTKQIFSMAPSSSTSTSTSSNLASYKLIILD 164
Query: 149 EADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTER 208
EADAMT AQ ALRR++EKYT NTRF +I N +K+ PAL SRCTRFRF+PL+ +
Sbjct: 165 EADAMTATAQMALRRIMEKYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKEADIRVL 224
Query: 209 LKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMAS------------------ 250
+ VIE E +++ + +LVRL GDMR+ALN+LQ+ +S
Sbjct: 225 VDLVIEKEEVNIQPEAVDSLVRLSKGDMRRALNVLQACFASSIPLPMKNAPKDQDQDQDA 284
Query: 251 ------QQITEEAVYLCTGNPLPKDIEQISYWLLNESFADS-FKRISEMKMRKGLALVDI 303
+ IT E +Y C P P DIE+I LL S S I+ +K KGLAL DI
Sbjct: 285 KGRPEAEVITNETIYDCIAAPHPSDIEEIMTTLLATSDVTSCLSTINTLKANKGLALADI 344
Query: 304 VREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDKLQLGSIIS 350
+ + + ++++P+ RV + LA+IE+RL+ G ++ +Q G ++
Sbjct: 345 LAALGDQLQRLEVPAQTRVTWLEGLAEIEWRLAGGGSETMQTGGLVG 391
>gi|328909099|gb|AEB61217.1| replication factor c subunit 5-like protein, partial [Equus
caballus]
Length = 245
Score = 290 bits (741), Expect = 9e-76, Method: Compositional matrix adjust.
Identities = 139/248 (56%), Positives = 184/248 (74%), Gaps = 3/248 (1%)
Query: 116 RGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFA 175
RGID+VR I FAST++ K KLV+LDEADAMT+DAQ ALRRV+EK+T+NTRF
Sbjct: 1 RGIDIVRGPILSFASTRTI---FKKGFKLVILDEADAMTQDAQNALRRVVEKFTENTRFC 57
Query: 176 LICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGD 235
LICN ++KIIPALQSRCTRFRF PL P + RL+HV+E E + ++E G+ ALV L +GD
Sbjct: 58 LICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLQHVVEEEKVAISEDGMKALVTLSSGD 117
Query: 236 MRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMR 295
MR+ALNILQST+MA ++TEE VY CTG+PL DI + W+LN+ F +++ I+E+K
Sbjct: 118 MRRALNILQSTNMAFGKVTEETVYTCTGHPLKSDIANVLDWMLNQDFTTAYRNITELKTL 177
Query: 296 KGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDKLQLGSIISTFTQA 355
KGLAL DI+ E+ +FV ++ P+ VR+ L+ +ADIEYRLS G N+K+QL S+I+ F
Sbjct: 178 KGLALHDILTEIHLFVHRVDFPTSVRIHLLTKMADIEYRLSVGTNEKIQLSSLIAAFQVT 237
Query: 356 RSAIVAAA 363
R IV+ A
Sbjct: 238 RDLIVSEA 245
>gi|400594648|gb|EJP62486.1| replication factor C subunit 3 [Beauveria bassiana ARSEF 2860]
Length = 376
Score = 290 bits (741), Expect = 9e-76, Method: Compositional matrix adjust.
Identities = 161/375 (42%), Positives = 227/375 (60%), Gaps = 43/375 (11%)
Query: 9 LMDFDEDENQNLKPKDNGKNVIVSGTPPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRL 68
+ DF ++ + + P N K+V+ S K + +SL DV H+DI+ TI++
Sbjct: 1 MSDFGDEMDVDSAPAQN-KDVVFSAD---------ASKGKRKSLDDVEGHQDILATINKF 50
Query: 69 TSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQY-HNMILELNASDDRGIDVVRQQIQD 127
NRLPHLLLYGPPGTGKTSTILA+AR++YGA + M+LELNASDDRGIDVVR+QI+
Sbjct: 51 VDANRLPHLLLYGPPGTGKTSTILALARRIYGAAHVRQMVLELNASDDRGIDVVREQIKT 110
Query: 128 FAST-QSFSFGV------------KASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRF 174
FAST Q F G A KL++LDEADAMT AQ ALRR++EKYT NTRF
Sbjct: 111 FASTKQIFGMGAPRSGTTSSSLSPAAGFKLIILDEADAMTSTAQMALRRIMEKYTANTRF 170
Query: 175 ALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNG 234
+I N +K+ PAL SRCTRFRF+PL+ + + + V++ EG+ + + ALV+L G
Sbjct: 171 CIIANYAHKLSPALLSRCTRFRFSPLKEADIRQLVTRVVDEEGVRIGAEAVDALVKLSKG 230
Query: 235 DMRKALNILQSTHMAS------------------QQITEEAVYLCTGNPLPKDIEQISYW 276
DMR+ALN+LQ+ H +S + IT E +Y C P P+ IEQI
Sbjct: 231 DMRRALNVLQACHASSTPLRAPGAPKTPDSEIRRENITTETIYTCIAAPAPEAIEQIMTT 290
Query: 277 LLNESFADS-FKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRL 335
LL S S I+ +K +GLAL D++ + + K+ + V + ++ LA+IE+R+
Sbjct: 291 LLGTSDVTSCLHAINSIKRLQGLALADVITALADELAKLDVSPAVMITWLDGLAEIEHRV 350
Query: 336 SFGCNDKLQLGSIIS 350
+ G ++ LQ G+++
Sbjct: 351 AGGGSEVLQTGAVVG 365
>gi|225557253|gb|EEH05539.1| conserved hypothetical protein [Ajellomyces capsulatus G186AR]
Length = 424
Score = 290 bits (741), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 159/328 (48%), Positives = 209/328 (63%), Gaps = 27/328 (8%)
Query: 44 VEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ- 102
VEKYRP SL +V+ H DI+ TI+R +NRLPHLLLYGPPGTGKTSTILA+AR++YG
Sbjct: 73 VEKYRPNSLEEVSGHHDIISTINRFIDKNRLPHLLLYGPPGTGKTSTILALARRIYGVNN 132
Query: 103 YHNMILELNASDDRGIDVVRQQIQDFAST-QSFSFG-------VKASVKLVLLDEADAMT 154
M+LELNASDDRGIDVVR QI+ FAST Q FS + KL++LDEADAMT
Sbjct: 133 MRQMVLELNASDDRGIDVVRDQIKTFASTKQIFSVAPTTKSESTLGAFKLIILDEADAMT 192
Query: 155 KDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIE 214
AQ ALRR++EKYT NTRF +I N +K+ PAL SRCTRFRF+PL+ + + V+E
Sbjct: 193 ATAQMALRRIMEKYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKEEDIRVLVDQVVE 252
Query: 215 AEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMAS-----------------QQITEEA 257
E + + + +LV+L GDMR+ALN+LQ+ H +S + IT+E
Sbjct: 253 KEQVRIQPEAIDSLVQLSKGDMRRALNVLQACHASSIPLPTKNGPKAQPTSEHETITDET 312
Query: 258 VYLCTGNPLPKDIEQISYWLLNESFADS-FKRISEMKMRKGLALVDIVREVTMFVFKIKM 316
+Y C P P DI+ I LL S S I +K KGLAL DI+ ++ + +I++
Sbjct: 313 IYTCIAAPHPSDIKTIITTLLTTSDVTSCLNTIKTLKSTKGLALADILTSISTELQRIEV 372
Query: 317 PSDVRVRLMNDLADIEYRLSFGCNDKLQ 344
P+ R+ M LADIE+RL+ G + +Q
Sbjct: 373 PAATRIVWMEGLADIEWRLAGGGGEMVQ 400
>gi|358391339|gb|EHK40743.1| hypothetical protein TRIATDRAFT_127338 [Trichoderma atroviride IMI
206040]
Length = 391
Score = 288 bits (737), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 157/331 (47%), Positives = 218/331 (65%), Gaps = 28/331 (8%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYG- 100
PWVEKYRP +L DV+ H+DI+ TI++ +NRLPHLLLYGPPGTGKTSTILA+AR++YG
Sbjct: 44 PWVEKYRPVTLEDVSGHQDILATINKFVEQNRLPHLLLYGPPGTGKTSTILALARRIYGV 103
Query: 101 AQYHNMILELNASDDRGIDVVRQQIQDFAST-QSFSFGVKAS-------VKLVLLDEADA 152
+ M+LELNASDDRGIDVVR+QI+ FAST Q FS G AS KL++LDEADA
Sbjct: 104 SNMRQMVLELNASDDRGIDVVREQIKTFASTKQIFSMGGGASKSNSIAGFKLIILDEADA 163
Query: 153 MTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHV 212
MT AQ ALRR++EKYT NTRF +I N +K+ PAL SRCTRFRF+PL+ + ++ V
Sbjct: 164 MTNTAQMALRRIMEKYTANTRFCIIANYAHKLSPALLSRCTRFRFSPLKEGDIRVLVEKV 223
Query: 213 IEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMAS------------------QQIT 254
+E E + + + ALV+L GDMR+ALN+LQ+ H +S + IT
Sbjct: 224 VEEENVKIQGEAVDALVKLSKGDMRRALNVLQACHASSTPLRLKNEPKPPESEIKRETIT 283
Query: 255 EEAVYLCTGNPLPKDIEQISYWLLNESFADS-FKRISEMKMRKGLALVDIVREVTMFVFK 313
E +Y C P P+ +++I LL+ S I+ +K +GLAL DI+ V + K
Sbjct: 284 TETIYNCIAAPQPEAVKEIVETLLSTPDVTSCLNTINALKTTQGLALADIITAVMEQLTK 343
Query: 314 IKMPSDVRVRLMNDLADIEYRLSFGCNDKLQ 344
+++ ++V + + LA+IE+R++ G ++ +Q
Sbjct: 344 LEVNAEVMITWLAGLAEIEHRVAGGASEMVQ 374
>gi|340518366|gb|EGR48607.1| replication factor C, subunit 3 [Trichoderma reesei QM6a]
Length = 391
Score = 288 bits (737), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 157/346 (45%), Positives = 216/346 (62%), Gaps = 42/346 (12%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYG- 100
PWVEKYRP +L DV+ H+DI+ TI++ NRLPHLLLYGPPGTGKTSTILA+AR++YG
Sbjct: 44 PWVEKYRPVTLDDVSGHQDILATINKFVESNRLPHLLLYGPPGTGKTSTILALARRIYGT 103
Query: 101 AQYHNMILELNASDDRGIDVVRQQIQDFAST-QSFSFGVKAS-------VKLVLLDEADA 152
A M+LELNASDDRGIDVVR+QI+ FAST Q F+ G A+ KL++LDEADA
Sbjct: 104 ANMRQMVLELNASDDRGIDVVREQIKTFASTKQIFTMGGGAAKGNSIAGFKLIILDEADA 163
Query: 153 MTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHV------- 205
MT AQ ALRR++EKYT NTRF +I N +K+ PAL SRCTRFRF+PL+ +
Sbjct: 164 MTNTAQMALRRIMEKYTANTRFCIIANYAHKLSPALLSRCTRFRFSPLKEGDIRVLVEKV 223
Query: 206 TERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMAS--------------- 250
E I+ E +D ALV+L GDMR+ALN+LQ+ H +S
Sbjct: 224 VEEEGVKIQGEAVD-------ALVKLSKGDMRRALNVLQACHASSTPLRLKNEPKPPESE 276
Query: 251 ---QQITEEAVYLCTGNPLPKDIEQISYWLLNESFADS-FKRISEMKMRKGLALVDIVRE 306
+ IT E +Y C P P I++I LL+ S I+ +K +GLAL DI+
Sbjct: 277 IQRETITTETIYNCIAAPQPDAIKEIMETLLSTPDVTSCLNTINALKTTQGLALADIITA 336
Query: 307 VTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDKLQLGSIISTF 352
+ + K+++ ++ + + LA+IE+R++ G ++ +Q G+++
Sbjct: 337 LMEQLTKLEVSAEAMITWLEGLAEIEHRVAGGGSEMVQTGAVVGVI 382
>gi|68490447|ref|XP_710951.1| hypothetical protein CaO19.3211 [Candida albicans SC5314]
gi|46432214|gb|EAK91709.1| hypothetical protein CaO19.3211 [Candida albicans SC5314]
gi|238882781|gb|EEQ46419.1| activator 1 40 kDa subunit [Candida albicans WO-1]
Length = 361
Score = 288 bits (736), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 151/331 (45%), Positives = 213/331 (64%), Gaps = 19/331 (5%)
Query: 44 VEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA-Q 102
VEKYRP SL +V ++IVDT+ + +LPHLL YGP GTGKTSTI+A+A+++YGA
Sbjct: 26 VEKYRPDSLEEVKGQQEIVDTVRKFVETGKLPHLLFYGPSGTGKTSTIIALAKEIYGATN 85
Query: 103 YHNMILELNASDDRGIDVVRQQIQDFAST-QSFSFGVKASV-----KLVLLDEADAMTKD 156
Y NMILELNASDDRGIDVVR QI++FAST Q F+ + KL++LDEADAMT
Sbjct: 86 YKNMILELNASDDRGIDVVRNQIKNFASTRQIFTKNTSQTASNNQFKLIILDEADAMTNV 145
Query: 157 AQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAE 216
AQ +LRRVIEK+TKN RF ++ N +K+ PAL SRCTRFRF P++ + +RL VI E
Sbjct: 146 AQNSLRRVIEKFTKNCRFCILANYSHKLNPALISRCTRFRFTPIDISAIKDRLNTVIIKE 205
Query: 217 GLDVTEGGLAALVRLCNGDMRKALNILQSTHM------------ASQQITEEAVYLCTGN 264
++++ + AL++L NGDMR+ALN+LQS A+ +I + +Y C G
Sbjct: 206 NVNISPEAIDALLKLSNGDMRRALNVLQSCKAALGDEEKEEDGHANDEIDVDMIYDCVGA 265
Query: 265 PLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRL 324
P P+D+E +L + + ++ +++ K KGLAL+D++ + K+ R+ +
Sbjct: 266 PHPQDVETCLDSILKDDWTTAYLTLNKYKTIKGLALIDLITGFIEILNNYKLKPKTRLEI 325
Query: 325 MNDLADIEYRLSFGCNDKLQLGSIISTFTQA 355
+ L+DIEY +S G NDK+Q +II A
Sbjct: 326 LKGLSDIEYGISKGGNDKIQTSAIIGVIKDA 356
>gi|403224069|dbj|BAM42199.1| replication factor C subunit [Theileria orientalis strain Shintoku]
Length = 347
Score = 287 bits (735), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 147/332 (44%), Positives = 212/332 (63%), Gaps = 12/332 (3%)
Query: 40 ASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLY 99
+PWVEKYRP++ D+ +H DI+ T+ + +LPHLL +GPPG GKTSTI+A+AR LY
Sbjct: 6 GAPWVEKYRPETFQDIISHEDIMSTLMVFAEKGQLPHLLFHGPPGAGKTSTIMAIARYLY 65
Query: 100 GAQYHNMILELNASDDRGIDVVRQQIQDFAST-QSFSFGV------KASVKLVLLDEADA 152
G+Q + +LELNASD+RGID VR+QI+ F+ T +FS + ++KL++LDEAD
Sbjct: 66 GSQRNGFVLELNASDERGIDTVREQIKSFSETSNTFSSTSANEDPPRTTLKLIILDEADQ 125
Query: 153 MTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHV 212
MT AQ ALRR++E Y+ N RF LICN +NKIIP +QSRCT FRF PL+P V +++K +
Sbjct: 126 MTNAAQNALRRIMEIYSNNVRFCLICNFMNKIIPPIQSRCTGFRFQPLKPELVRQKIKDI 185
Query: 213 IEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQ-----ITEEAVYLCTGNPLP 267
E + V+E L LV + GDMR+ LN LQ T M+ + I + +G P
Sbjct: 186 AAIEKVSVSECALDTLVDIGQGDMRRVLNCLQVTAMSYAKGSDVVIDSNLILATSGLPKT 245
Query: 268 KDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMND 327
+I+ + L+ SF + ++E+ KG ++ D+VR V V KI P+ ++L+
Sbjct: 246 LEIDHLLQSLMQNSFKECVDELNELHHTKGYSVEDLVRGVYKAVLKIDWPNVPVIQLLIR 305
Query: 328 LADIEYRLSFGCNDKLQLGSIISTFTQARSAI 359
LADIE RLS G N +Q+ +++S+F +AR I
Sbjct: 306 LADIEERLSSGANTSIQIAALVSSFAEARYEI 337
>gi|156084582|ref|XP_001609774.1| replication factor C3 protein [Babesia bovis T2Bo]
gi|154797026|gb|EDO06206.1| replication factor C3 protein, putative [Babesia bovis]
Length = 348
Score = 287 bits (734), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 147/331 (44%), Positives = 211/331 (63%), Gaps = 13/331 (3%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP+S +D+ +H DI+ T+ + +LPHLL +GPPGTGKTSTI+AV+R LYG+
Sbjct: 8 PWVEKYRPESFSDIISHDDILSTLMNFAEKGQLPHLLFHGPPGTGKTSTIMAVSRYLYGS 67
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFAST-QSFSFGV-------KASVKLVLLDEADAM 153
H+ ++ELNASD+RGI+ VR+QI+ FA T +FS G+ + ++KL++LDEAD M
Sbjct: 68 HRHSYVMELNASDERGIETVREQIKTFAETSNTFSSGIVGSDSGPRTNLKLIILDEADQM 127
Query: 154 TKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVI 213
T AQ +LRR++E Y+ N RF LICN +N+IIP +QSRCT FRF PL+ V R +
Sbjct: 128 TNAAQNSLRRIMEIYSSNVRFCLICNFMNRIIPPIQSRCTGFRFPPLKNDVVKRRTADIA 187
Query: 214 EAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMA-----SQQITEEAVYLCTGNPLPK 268
+AEGL V+E L L + GDMR+ LN LQ T M+ + IT + V G P P
Sbjct: 188 KAEGLTVSECALDTLAEIGQGDMRRVLNCLQVTAMSIGATRDKVITSDVVISTAGLPNPT 247
Query: 269 DIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDL 328
+I ++ L+ ESF D + + +G ++ D+V + + +I P+ V V+L+ L
Sbjct: 248 EISKLLQRLMQESFKDCVDYVVTLNQVQGYSVEDLVTALYRSILRIDWPNVVIVQLLIRL 307
Query: 329 ADIEYRLSFGCNDKLQLGSIISTFTQARSAI 359
DIE RLS G + +Q+ S++S F + R I
Sbjct: 308 GDIEQRLSAGASPYIQIASLVSAFAEVRLEI 338
>gi|452981800|gb|EME81559.1| hypothetical protein MYCFIDRAFT_188590 [Pseudocercospora fijiensis
CIRAD86]
Length = 367
Score = 287 bits (734), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 151/322 (46%), Positives = 204/322 (63%), Gaps = 29/322 (9%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP SL+DV+ H+DI+ TI++ NRLPHLLLYGPPGTGKTST+LA+ARK+YG
Sbjct: 45 PWVEKYRPNSLSDVSGHQDILATINKFVDSNRLPHLLLYGPPGTGKTSTVLALARKIYGN 104
Query: 102 Q-YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGV---------KASVKLVLLDEAD 151
+ M+LELNASDDRGIDVVR+QI+ F+ST+ G A+ KL++LDEAD
Sbjct: 105 KNMRQMVLELNASDDRGIDVVREQIKTFSSTKQIFAGSFDKSKQDDSMATYKLIILDEAD 164
Query: 152 AMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKH 211
AMT AQ ALRR++E+YT NTRF +I N +K+ PAL SRCTRFRF+PL+ + +
Sbjct: 165 AMTSTAQMALRRIMERYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKEPDIRRLVDK 224
Query: 212 VIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQ------------------I 253
VI EG+++ +LV L GDMR+ALN+LQ+ H +S I
Sbjct: 225 VIIEEGVNIASDATDSLVTLSKGDMRRALNVLQACHASSTPLHVPGEPVKEGKDIQRDLI 284
Query: 254 TEEAVYLCTGNPLPKDIEQISYWLL-NESFADSFKRISEMKMRKGLALVDIVREVTMFVF 312
T E +Y C P P DI+ I LL ++ I+ +K KGLAL DI+ + +
Sbjct: 285 TMETIYDCIAAPHPADIKMIIQTLLTTKNVGSCLTTINVLKKTKGLALADILTALGDELT 344
Query: 313 KIKMPSDVRVRLMNDLADIEYR 334
++++P+ RV + L +IE+R
Sbjct: 345 ELEVPAQTRVAWLEGLPEIEHR 366
>gi|71028744|ref|XP_764015.1| replication factor C subunit 3 [Theileria parva strain Muguga]
gi|68350969|gb|EAN31732.1| replication factor C subunit 3, putative [Theileria parva]
Length = 347
Score = 286 bits (733), Expect = 8e-75, Method: Compositional matrix adjust.
Identities = 147/332 (44%), Positives = 214/332 (64%), Gaps = 12/332 (3%)
Query: 40 ASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLY 99
+PWVEKYRP++L D+ +H DI+ T+ + +LPHLL +GPPG+GKTSTILA++R LY
Sbjct: 6 GAPWVEKYRPETLQDIISHEDIMSTLMIFAEKGQLPHLLFHGPPGSGKTSTILAISRYLY 65
Query: 100 GAQYHNMILELNASDDRGIDVVRQQIQDFAST-QSFSFGV------KASVKLVLLDEADA 152
G+Q + +LELNASD+RGID VR QI+ F+ T +F+ + + ++KL++LDEAD
Sbjct: 66 GSQRNGFVLELNASDERGIDTVRDQIKAFSETSNTFTSTMPVDDPPRTNLKLIILDEADQ 125
Query: 153 MTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHV 212
MT AQ ALRR++E Y+ N RF LICN +NKIIP +QSRCT FRF PL+ V ER++ +
Sbjct: 126 MTNAAQNALRRIMEIYSNNVRFCLICNFMNKIIPPIQSRCTGFRFQPLKSDVVRERIREI 185
Query: 213 IEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQ-----ITEEAVYLCTGNPLP 267
+ E + +T+ L ALV + GDMR+ LN LQ T M+ + I + +G P
Sbjct: 186 AKLENVKITDCALDALVEIGQGDMRRVLNCLQVTSMSHAKGADFTIDANLILATSGLPQS 245
Query: 268 KDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMND 327
+I+ + L+ SF + +S + +KG +L DIVR + + KI P+ V+L+
Sbjct: 246 SEIDHLLKSLMQNSFKECIYELSVLHHKKGYSLEDIVRLLYKSIVKIDWPNVPIVQLLIR 305
Query: 328 LADIEYRLSFGCNDKLQLGSIISTFTQARSAI 359
LAD+E RL+ G N +Q+ SI+S F ++R I
Sbjct: 306 LADVEERLAAGANSNIQIASIVSAFQESRYEI 337
>gi|294461102|gb|ADE76118.1| unknown [Picea sitchensis]
Length = 205
Score = 286 bits (732), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 141/191 (73%), Positives = 154/191 (80%), Gaps = 4/191 (2%)
Query: 5 ETVSLMDFDEDENQNLKPKDNGKNVIVSGTPPDIKASPWVEKYRPQSLADVAAHRDIVDT 64
E + MD DE K GK G+ K PWVEKYRPQSLADVAAH+DI++T
Sbjct: 2 EEPTFMDVDEQFPSQKSNKGKGK----IGSDVIQKTGPWVEKYRPQSLADVAAHKDIIET 57
Query: 65 IDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQ 124
IDRLTSEN+LPHLLLYGPPGTGKTST+LAVARKLYG+QY NMILELNASDDRGI+VVR Q
Sbjct: 58 IDRLTSENKLPHLLLYGPPGTGKTSTVLAVARKLYGSQYQNMILELNASDDRGIEVVRHQ 117
Query: 125 IQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKI 184
IQDFASTQSFSFG K+SVKLVLLDEADAMTKDAQF+LRRV+EKYTK+TRF LICN VNKI
Sbjct: 118 IQDFASTQSFSFGAKSSVKLVLLDEADAMTKDAQFSLRRVMEKYTKSTRFVLICNYVNKI 177
Query: 185 IPALQSRCTRF 195
IPA F
Sbjct: 178 IPAFNQGALDF 188
>gi|124810138|ref|XP_001348775.1| replication factor C3 [Plasmodium falciparum 3D7]
gi|11559500|gb|AAG37985.1|AF069296_1 replication factor C3 [Plasmodium falciparum]
gi|23497675|gb|AAN37214.1|AE014826_13 replication factor C3 [Plasmodium falciparum 3D7]
Length = 344
Score = 285 bits (730), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 138/322 (42%), Positives = 214/322 (66%), Gaps = 3/322 (0%)
Query: 41 SPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYG 100
+PWVEKYRP L D+ +H ++ TI R + LPHLLL+GPPGTGKTSTILAV ++LYG
Sbjct: 13 TPWVEKYRPNVLNDIISHEQVISTIKRFVQKGELPHLLLHGPPGTGKTSTILAVCKELYG 72
Query: 101 AQYHNMILELNASDDRGIDVVRQQIQDFASTQS-FSFGVKASVKLVLLDEADAMTKDAQF 159
+ + +LELNASDDRGI+V+R QI+ FA +++ ++ K ++KL++LDEAD MT AQ
Sbjct: 73 DKRSSFVLELNASDDRGINVIRDQIKTFAESKNHYTTCEKTTLKLIILDEADHMTYPAQN 132
Query: 160 ALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLD 219
A+RR++E Y KN RF L+CN VNKI PA+QSRCT FRFAPL+ ++ + + ++E ++
Sbjct: 133 AMRRIMENYAKNVRFCLLCNYVNKITPAIQSRCTAFRFAPLKKEYMKNKALDIAKSENVN 192
Query: 220 VTEGGLAALVRLCNGDMRKALNILQSTHMASQQ-ITEEAVYLCTGN-PLPKDIEQISYWL 277
+TEGG+ +L+R+ +GDMR+ LN LQ ++ + + +E V L T + PLP + ++I +
Sbjct: 193 LTEGGIDSLIRVGHGDMRRILNCLQVVSLSHKNLVIDENVILSTLDIPLPSETKKILEYF 252
Query: 278 LNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSF 337
S +S++ +S ++ KG + DI+ + V P L+ + +IE R S
Sbjct: 253 TKGSIKESYEFVSNLQYDKGYSTKDIMMCLYESVLTYDFPDSAFCLLLKNFGEIEERCSS 312
Query: 338 GCNDKLQLGSIISTFTQARSAI 359
G ++++ L ++IS F + R+ +
Sbjct: 313 GASEQITLSALISAFVEFRTEL 334
>gi|256090013|ref|XP_002581023.1| replication factor C / DNA polymerase III gamma-tau subunit
[Schistosoma mansoni]
Length = 245
Score = 285 bits (730), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 133/243 (54%), Positives = 181/243 (74%), Gaps = 3/243 (1%)
Query: 44 VEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQY 103
+EKYRP S+ D+ +H DI TI R +RLPHLL YGPPGTGKTSTILA A++LY Q+
Sbjct: 5 IEKYRPSSIEDLISHDDISKTIKRFIDNDRLPHLLFYGPPGTGKTSTILAAAKRLYSRQF 64
Query: 104 HNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRR 163
+M+LELNASDDRGIDVVR+Q+ FAST++ G KLV+LDEAD+MTKDAQ ALRR
Sbjct: 65 SSMVLELNASDDRGIDVVREQVLSFASTKTLFAG---KFKLVILDEADSMTKDAQNALRR 121
Query: 164 VIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEG 223
+IEK+T+NTRF LICN ++KIIPA+QSRCT+FRFAPL V+ L+ + EG+D+T+
Sbjct: 122 IIEKFTENTRFCLICNYLSKIIPAIQSRCTKFRFAPLAFNDVSTCLRKIASNEGVDLTDD 181
Query: 224 GLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESFA 283
G+ A+ + +GDMRK++N+LQST+M+S+ + +VY C P P ++ + +LNE +
Sbjct: 182 GIKAIYQFASGDMRKSINLLQSTYMSSKTVDGPSVYACVAYPSPTEVRSLLDHVLNEPIS 241
Query: 284 DSF 286
++
Sbjct: 242 TAY 244
>gi|156100055|ref|XP_001615755.1| replication factor C3 [Plasmodium vivax Sal-1]
gi|148804629|gb|EDL46028.1| replication factor C3, putative [Plasmodium vivax]
Length = 344
Score = 285 bits (729), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 136/322 (42%), Positives = 214/322 (66%), Gaps = 3/322 (0%)
Query: 41 SPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYG 100
+PWVEKYRP L D+ +H ++ TI + + LPHLLL+GPPGTGKTSTILAV ++LYG
Sbjct: 13 TPWVEKYRPNVLNDIISHEQVISTIQKFVEKGELPHLLLHGPPGTGKTSTILAVCKELYG 72
Query: 101 AQYHNMILELNASDDRGIDVVRQQIQDFASTQS-FSFGVKASVKLVLLDEADAMTKDAQF 159
+ +LELNASDDRGI VVR QI+ FA +++ ++ K ++KL++LDEAD MT AQ
Sbjct: 73 ESRSSFVLELNASDDRGISVVRDQIKTFAESKNHYNTCEKTTLKLIILDEADHMTYPAQN 132
Query: 160 ALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLD 219
A+RR++E Y KN RF L+CN VNKI PA+QSRCT FRF+PL+ ++ + + ++E +D
Sbjct: 133 AMRRIMENYAKNVRFCLLCNYVNKITPAIQSRCTSFRFSPLKKEYMVNKALDIAKSENVD 192
Query: 220 VTEGGLAALVRLCNGDMRKALNILQSTHMASQQIT-EEAVYLCTGN-PLPKDIEQISYWL 277
+T+ GL +L+R+ GDMR+ LN LQ ++ + +T ++ V L T + PLP++++ I L
Sbjct: 193 LTQDGLESLIRVGRGDMRRILNCLQVVSLSHKNMTIDQNVILSTLDIPLPEEVKDILEHL 252
Query: 278 LNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSF 337
+ +S++ +++++ KG ++ DI+ + + P L+ + +IE R S
Sbjct: 253 TKSTIKESYEFVTKLQCSKGYSIKDIMVNLYESILTYDFPDSAVCLLLKNFGEIEERCST 312
Query: 338 GCNDKLQLGSIISTFTQARSAI 359
G N+++ L ++IS F + R+ +
Sbjct: 313 GANEQITLSALISAFIEFRAEL 334
>gi|342888810|gb|EGU88029.1| hypothetical protein FOXB_01512 [Fusarium oxysporum Fo5176]
Length = 1431
Score = 285 bits (728), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 156/328 (47%), Positives = 212/328 (64%), Gaps = 29/328 (8%)
Query: 44 VEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA-Q 102
VEKYRP +L DV+ H+DI+ TI++ +NRLPHLLLYGPPGTGKTSTILA+AR++YGA
Sbjct: 623 VEKYRPNTLDDVSGHQDILATINKFIDQNRLPHLLLYGPPGTGKTSTILALARRIYGAAN 682
Query: 103 YHNMILELNASDDRGIDVVRQQIQDFAST-QSFSFG--------VKASVKLVLLDEADAM 153
M+LELNASDDRGIDVVR+QI+ FAST Q FS G A KL++LDEADAM
Sbjct: 683 MRQMVLELNASDDRGIDVVREQIKTFASTKQIFSMGGASARSGNSMAGFKLIVLDEADAM 742
Query: 154 TKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVI 213
T AQ ALRR++EKYT NTRF +I N +K+ PAL SRCTRFRF+PL+ + + V+
Sbjct: 743 TSTAQMALRRIMEKYTTNTRFCIIANYSHKLSPALLSRCTRFRFSPLKEGDIRVLVDKVV 802
Query: 214 EAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMAS------------------QQITE 255
E E + + + ALV+L GDMR+ALN+LQ+ H +S + IT
Sbjct: 803 EEEHVRIGGEAVDALVKLSKGDMRRALNVLQACHASSTPLRAKDAPKVPDSEIERENITT 862
Query: 256 EAVYLCTGNPLPKDIEQISYWLLNESFADS-FKRISEMKMRKGLALVDIVREVTMFVFKI 314
E +Y C P P I++I LL S S I+ +K+ +GLAL DI+ ++ + K+
Sbjct: 863 ETIYNCIAAPPPDAIKEIVSTLLKTSDVTSCLNTINALKVSRGLALADIITALSEELAKL 922
Query: 315 KMPSDVRVRLMNDLADIEYRLSFGCNDK 342
++ +V + ++ LA+IE+R++ G K
Sbjct: 923 EVGPEVMITWLDGLANIEHRVAGGGRPK 950
>gi|84996647|ref|XP_953045.1| replication factor C subunit [Theileria annulata strain Ankara]
gi|65304041|emb|CAI76420.1| replication factor C subunit, putative [Theileria annulata]
Length = 347
Score = 284 bits (727), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 145/332 (43%), Positives = 212/332 (63%), Gaps = 12/332 (3%)
Query: 40 ASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLY 99
+PWVEKYRP++L D+ +H DI+ T+ + +LPHLL +GPPG+GKTSTILA++R +Y
Sbjct: 6 GAPWVEKYRPETLQDIISHEDIMSTLMVFAEKGQLPHLLFHGPPGSGKTSTILAISRYMY 65
Query: 100 GAQYHNMILELNASDDRGIDVVRQQIQDFAST-QSFSFGV------KASVKLVLLDEADA 152
G + +LELNASD+RGID VR QI+ F+ T +F+ + + ++KL++LDEAD
Sbjct: 66 GNSRNGFVLELNASDERGIDTVRDQIKAFSETSNTFTSSIPVEDPPRTNLKLIILDEADQ 125
Query: 153 MTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHV 212
MT AQ ALRR++E Y+ N RF LICN +NKIIP +QSRCT FRF PL+P V ER K +
Sbjct: 126 MTNAAQNALRRIMEIYSNNVRFCLICNFMNKIIPPIQSRCTGFRFQPLKPDVVRERTKEI 185
Query: 213 IEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITE-----EAVYLCTGNPLP 267
+ E + +T+ L ALV + GDMR+ LN LQ T M+ T+ + +G P
Sbjct: 186 AKLENVKITDCALDALVEIGQGDMRRVLNCLQVTSMSHSSKTDFTVDANLILSTSGLPQS 245
Query: 268 KDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMND 327
+I+ + L+ +F + ++ + +KG +L DIV+ + V KI P+ ++L+
Sbjct: 246 SEIDHLLKSLMQNTFKECIYELNLLHHKKGHSLEDIVKGLYKCVVKIDWPNVPIIQLLIR 305
Query: 328 LADIEYRLSFGCNDKLQLGSIISTFTQARSAI 359
LAD+E RLS G N +Q+ SI+S F ++R I
Sbjct: 306 LADVEERLSAGANSNIQIASIVSAFQESRFEI 337
>gi|346325998|gb|EGX95594.1| activator 1 subunit 3 [Cordyceps militaris CM01]
Length = 420
Score = 283 bits (725), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 160/409 (39%), Positives = 233/409 (56%), Gaps = 67/409 (16%)
Query: 9 LMDFDEDENQNLKPKDNGKNVIVSGTPPDIKAS-----------PWVEKYRPQSLADVAA 57
+ DF+++ + +L P N + + +++ PW+EKYRP SL DV
Sbjct: 1 MSDFEDEMDVDLAPAQNNAALFSADASKGKRSTANLPVEAEDTLPWIEKYRPVSLDDVEG 60
Query: 58 HRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA-QYHNMILELNASDDR 116
H+DI+ TI++ NRLPHLLLYGPPGTGKTSTILA+AR++YGA Q M+LELNASDDR
Sbjct: 61 HQDILATINKFVDSNRLPHLLLYGPPGTGKTSTILALARRIYGAAQARQMVLELNASDDR 120
Query: 117 GIDVVRQQIQDFASTQSF-----------SFGVKASVKLVLLDEADAMTKDAQFALRRVI 165
GIDVVR+QI+ FAST+ A KL++LDEADAMT AQ ALRR++
Sbjct: 121 GIDVVREQIKTFASTKQIFNMGGAAAAAGRSSAMAGYKLIILDEADAMTNTAQMALRRIM 180
Query: 166 EKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGL 225
EKYT NTRF +I N +K+ PAL SRCTRFRF+PL+ + + + V++ EG+ + +
Sbjct: 181 EKYTANTRFCIIANYAHKLSPALLSRCTRFRFSPLKEADIRQLVVKVVDEEGVRIGAEAV 240
Query: 226 AALVRLCNGDMRKALNILQSTHMASQQI---------------TEE-------------- 256
ALV+L GDMR+ALN+LQ+ H +S+ + T E
Sbjct: 241 DALVKLSKGDMRRALNVLQACHASSKLLAVSPLLDIFFFFFLLTSEKFAGTPLRAPGAPK 300
Query: 257 --------------AVYLCTGNPLPKDIEQISYWLLNES-FADSFKRISEMKMRKGLALV 301
+Y C P P+ I+QI LL + A ++ +K +GLAL
Sbjct: 301 VPDSELQRETITTETIYTCIAAPAPEAIQQIMSTLLGTADVASCLGTVNSIKRLQGLALA 360
Query: 302 DIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDKLQLGSIIS 350
D++ + + K+ +P V + ++ LA+IE+R++ G ++ LQ G+++
Sbjct: 361 DVITALAEELGKLDVPPAVMITWLDGLAEIEHRVAGGGSEVLQTGAVVG 409
>gi|241839414|ref|XP_002415236.1| replication factor C, subunit RFC2, putative [Ixodes scapularis]
gi|215509448|gb|EEC18901.1| replication factor C, subunit RFC2, putative [Ixodes scapularis]
Length = 252
Score = 283 bits (724), Expect = 9e-74, Method: Compositional matrix adjust.
Identities = 139/254 (54%), Positives = 191/254 (75%), Gaps = 3/254 (1%)
Query: 106 MILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVI 165
M+LELNASDDRGI +VR +I +FAST++ K+ KL++LDEADAMT DAQ ALRRVI
Sbjct: 1 MVLELNASDDRGIGIVRGEILNFASTKTI---FKSGFKLIILDEADAMTNDAQNALRRVI 57
Query: 166 EKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGL 225
EK+T+N RF LICN ++KIIPALQSRCTRFRF PL ++ R++HVIE E L VTE G
Sbjct: 58 EKFTENARFCLICNYLSKIIPALQSRCTRFRFGPLSLSQMSPRIEHVIEQERLTVTEDGK 117
Query: 226 AALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESFADS 285
AL+ L GDMRKALNILQST MA +++TE VY C G+PL DI + LLNE FA S
Sbjct: 118 KALMDLAQGDMRKALNILQSTSMAFEEVTENNVYQCVGHPLKSDISNMVTTLLNEDFAFS 177
Query: 286 FKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDKLQL 345
+ +I+++K+ KGLAL D++ ++ ++V +I+ P++V++ L++ +A+IE RL+ G ++K+QL
Sbjct: 178 YDQINKVKVNKGLALQDVLTQIHLYVHRIEFPNEVKMYLIDKMAEIENRLAAGTSEKIQL 237
Query: 346 GSIISTFTQARSAI 359
S+I+ F AR +
Sbjct: 238 SSLIAAFQTARQMV 251
>gi|389585221|dbj|GAB67952.1| replication factor C3 [Plasmodium cynomolgi strain B]
Length = 344
Score = 283 bits (724), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 136/322 (42%), Positives = 212/322 (65%), Gaps = 3/322 (0%)
Query: 41 SPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYG 100
+PWVEKYRP L D+ +H ++ TI + + LPHLLL+GPPGTGKTSTILAV ++LYG
Sbjct: 13 TPWVEKYRPNVLNDIISHEQVISTIQKFVEKGELPHLLLHGPPGTGKTSTILAVCKELYG 72
Query: 101 AQYHNMILELNASDDRGIDVVRQQIQDFASTQS-FSFGVKASVKLVLLDEADAMTKDAQF 159
+ +LELNASDDRGI VVR QI+ FA +++ ++ K S+KL++LDEAD MT AQ
Sbjct: 73 ESRSSFVLELNASDDRGISVVRDQIKTFAESKNHYNTCEKTSLKLIILDEADHMTYPAQN 132
Query: 160 ALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLD 219
A+RR++E Y KN RF L+CN VNKI PA+QSRCT FRF+PL+ ++ + + ++E +D
Sbjct: 133 AMRRIMENYAKNVRFCLLCNYVNKITPAIQSRCTSFRFSPLKKEYMINKALDIAKSENVD 192
Query: 220 VTEGGLAALVRLCNGDMRKALNILQSTHMASQQIT-EEAVYLCTGN-PLPKDIEQISYWL 277
+T+ GL +L+R+ GDMR+ LN LQ ++ + +T ++ V L T + PLP++++ I
Sbjct: 193 LTKDGLESLIRVGRGDMRRILNCLQVVSLSHKNMTIDQNVILSTLDIPLPEEVKDILEHF 252
Query: 278 LNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSF 337
+ +S++ +++++ KG ++ DI+ + + P L+ +IE R S
Sbjct: 253 TKSTIKESYEFVTKLQSTKGYSIKDIMVNLYESILTYDFPDSAVCLLLKSFGEIEERCSS 312
Query: 338 GCNDKLQLGSIISTFTQARSAI 359
G N+++ L ++IS F + R+ +
Sbjct: 313 GANEQITLSALISAFIEFRTEL 334
>gi|384486424|gb|EIE78604.1| hypothetical protein RO3G_03308 [Rhizopus delemar RA 99-880]
Length = 253
Score = 283 bits (723), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 135/254 (53%), Positives = 187/254 (73%), Gaps = 3/254 (1%)
Query: 106 MILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVI 165
MILELNASDDRGIDVVR+QI++FAST++ + KL++LDEAD+MT AQ ALRRVI
Sbjct: 1 MILELNASDDRGIDVVREQIKNFASTRNI---YSSGFKLIILDEADSMTNQAQSALRRVI 57
Query: 166 EKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGL 225
EKYTKN RF ++CN V+KIIPA+QSRCTRFRFAPLE V RL+ +++ E +D+TE G
Sbjct: 58 EKYTKNVRFCIVCNYVSKIIPAIQSRCTRFRFAPLEMEQVESRLQTIVDQEKVDLTEDGK 117
Query: 226 AALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESFADS 285
AL++L GDMR+ALNILQ+ H A +I E A+Y CTG+P P+DIE+I W+++E F +
Sbjct: 118 KALLQLSKGDMRRALNILQACHAAYDRIDENAIYNCTGHPHPQDIERIFRWMMSEEFTTA 177
Query: 286 FKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDKLQL 345
+ I ++K GLAL DI+ E+ + K++ P++ R +++ LA+IEYRL G ++K+QL
Sbjct: 178 YSNIDKLKRESGLALQDILSEIYYYARKVEFPAESRSFMLDKLAEIEYRLGEGGSEKVQL 237
Query: 346 GSIISTFTQARSAI 359
G+++ F A I
Sbjct: 238 GALVGVFKLATDKI 251
>gi|209880093|ref|XP_002141486.1| replication factor C, subunit 5 [Cryptosporidium muris RN66]
gi|209557092|gb|EEA07137.1| replication factor C, subunit 5, putative [Cryptosporidium muris
RN66]
Length = 371
Score = 280 bits (716), Expect = 7e-73, Method: Compositional matrix adjust.
Identities = 149/357 (41%), Positives = 209/357 (58%), Gaps = 42/357 (11%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP+SL ++ +H+DI+ TI + + +LPHLL +GPPGTGKTSTI A+++ +YG
Sbjct: 8 PWVEKYRPESLEELISHKDIIGTIGKFINSGQLPHLLFHGPPGTGKTSTIHALSKFIYGE 67
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQS---------------------FSFGVKA 140
+ M+LELNASDDRGI+VVR I+ FA + S F+
Sbjct: 68 KKKQMVLELNASDDRGINVVRDAIKSFAESASTNMDCFEDIQTRGESGTTNLIFNRNFWR 127
Query: 141 SVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPL 200
+VKL++LDEAD MT AQ ALRR++EKY+++ RF +ICN VNKIIPALQSRCTRFRF+PL
Sbjct: 128 NVKLIILDEADMMTPVAQMALRRILEKYSEHVRFCIICNYVNKIIPALQSRCTRFRFSPL 187
Query: 201 EPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHM------------ 248
+ ++ + +AEG+ ++ G+ AL+ GDMRK LNILQS HM
Sbjct: 188 SINEMENKILVISKAEGIYTSKDGITALIEAARGDMRKVLNILQSCHMDNYGNVHEYMSS 247
Query: 249 ---------ASQQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLA 299
+ I E+ V+ G P K+I+ + L N++F++ + G A
Sbjct: 248 CDFTIMNENTNTYINEQMVHRTLGIPTSKEIDFLMNILTNKTFSEGTNALMNYYREYGYA 307
Query: 300 LVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDKLQLGSIISTFTQAR 356
D V + + KI P V +M LADIEYRLS G ++ +Q +I+S + R
Sbjct: 308 TQDFVNLLYRRLLKINWPDSVIPLIMKRLADIEYRLSCGASETVQFSAIVSCICEVR 364
>gi|221059177|ref|XP_002260234.1| replication factor C3 [Plasmodium knowlesi strain H]
gi|193810307|emb|CAQ41501.1| replication factor C3, putative [Plasmodium knowlesi strain H]
Length = 344
Score = 279 bits (713), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 133/322 (41%), Positives = 212/322 (65%), Gaps = 3/322 (0%)
Query: 41 SPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYG 100
+PWVEKYRP L D+ +H ++ TI + + LPHLLL+GPPGTGKTSTILAV ++LYG
Sbjct: 13 TPWVEKYRPNVLNDIISHEQVISTIQKFVQKGELPHLLLHGPPGTGKTSTILAVCKELYG 72
Query: 101 AQYHNMILELNASDDRGIDVVRQQIQDFASTQS-FSFGVKASVKLVLLDEADAMTKDAQF 159
+ +LELNASDDRGI VVR QI+ FA +++ ++ K ++KL++LDEAD MT AQ
Sbjct: 73 ESRSSFVLELNASDDRGISVVRDQIKTFAESKNHYNTCEKTALKLIILDEADHMTYPAQN 132
Query: 160 ALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLD 219
A+RR++E Y KN RF L+CN VNKI PA+QSRCT FRF+PL+ ++ + + ++E ++
Sbjct: 133 AMRRIMENYAKNVRFCLLCNYVNKITPAIQSRCTSFRFSPLKKEYMVNKALDIAKSENVE 192
Query: 220 VTEGGLAALVRLCNGDMRKALNILQSTHMASQQIT-EEAVYLCTGN-PLPKDIEQISYWL 277
+T+ GL +L+ + GDMR+ LN LQ ++ + +T ++ V L T + PLP ++++I
Sbjct: 193 LTKDGLDSLIHVGRGDMRRILNCLQVVSLSHKNMTIDQNVILSTLDIPLPGEVKEILNHF 252
Query: 278 LNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSF 337
+ +S++ +++++ KG ++ DI+ + + P L+ + +IE R S
Sbjct: 253 TKSTMKESYEFVTKLQSTKGYSIKDIMVNLYESILTYDFPDSAMCLLLKNFGEIEERCSS 312
Query: 338 GCNDKLQLGSIISTFTQARSAI 359
G N+++ L ++IS F + R+ +
Sbjct: 313 GANEQITLSALISAFIEFRTEL 334
>gi|358377812|gb|EHK15495.1| hypothetical protein TRIVIDRAFT_38974 [Trichoderma virens Gv29-8]
Length = 391
Score = 278 bits (712), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 153/331 (46%), Positives = 212/331 (64%), Gaps = 28/331 (8%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYG- 100
PWVEKYRP +L DV+ H+DI+ TI++ NRLPHLLLYGPPGTGKTSTILA+AR++YG
Sbjct: 44 PWVEKYRPVTLDDVSGHQDILATINKFVESNRLPHLLLYGPPGTGKTSTILALARRIYGT 103
Query: 101 AQYHNMILELNASDDRGIDVVRQQIQDFASTQSF--------SFGVKASVKLVLLDEADA 152
A M+LELNASDDRGIDVVR+QI+ FAST+ A KL++LDEADA
Sbjct: 104 ANMRQMVLELNASDDRGIDVVREQIKTFASTKQIFSMGSSAAKSSSIAGFKLIILDEADA 163
Query: 153 MTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHV 212
MT AQ ALRR++EKYT NTRF +I N +K+ PAL SRCTRFRF+PL+ + ++ V
Sbjct: 164 MTNTAQMALRRIMEKYTANTRFCIIANYAHKLSPALLSRCTRFRFSPLKEGDIRVLVEKV 223
Query: 213 IEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMAS------------------QQIT 254
+E E + + + ALV+L GDMR+ALN+LQ+ H +S + IT
Sbjct: 224 VEEENVKIQGEAVDALVKLSKGDMRRALNVLQACHASSTPLRLKNEPKPPESEIQRETIT 283
Query: 255 EEAVYLCTGNPLPKDIEQISYWLLNESFADS-FKRISEMKMRKGLALVDIVREVTMFVFK 313
E +Y C P P I++I LL+ S I+ +K +GLAL DI+ + + K
Sbjct: 284 TETIYNCIAAPQPDAIKEIMETLLSTPDVTSCLNTINALKTTQGLALADIITALMEQLTK 343
Query: 314 IKMPSDVRVRLMNDLADIEYRLSFGCNDKLQ 344
+++ ++V + + LA+IE+R++ G ++ +Q
Sbjct: 344 LEVSAEVMITWLEGLAEIEHRVAGGGSEMVQ 374
>gi|237843503|ref|XP_002371049.1| activator 1 36 kDa, putative [Toxoplasma gondii ME49]
gi|211968713|gb|EEB03909.1| activator 1 36 kDa, putative [Toxoplasma gondii ME49]
gi|221484795|gb|EEE23089.1| activator 1 36 kDa, putative [Toxoplasma gondii GT1]
gi|221504971|gb|EEE30636.1| activator 1 36 kDa, putative [Toxoplasma gondii VEG]
Length = 398
Score = 277 bits (708), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 143/346 (41%), Positives = 209/346 (60%), Gaps = 32/346 (9%)
Query: 39 KASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKL 98
+A PWVEKYRP+ L+DV AH DI+ TI + +LPHLL +GPPGTGKTSTILAVA++
Sbjct: 33 RALPWVEKYRPERLSDVLAHDDIIRTIRNYVHKGQLPHLLFHGPPGTGKTSTILAVAKEF 92
Query: 99 YGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSF-------GVKA----------- 140
YG+ +LELNASDDRGI+ VR+QI+ FA T S SF G A
Sbjct: 93 YGSAVRTHVLELNASDDRGINTVREQIKTFAETSSTSFQQNRLIFGKSAVPATEAAEATS 152
Query: 141 ------------SVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPAL 188
S+KL++LDEAD MT AQ ALRR++E Y +N RF LICN VNKI PA+
Sbjct: 153 SHGQEKKGQGGPSLKLIILDEADQMTNAAQNALRRIMEAYARNVRFCLICNFVNKITPAI 212
Query: 189 QSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHM 248
QSRCT FRF P+ + + +++ E + +++ GL ALV++ GDMR+ LN +Q++H+
Sbjct: 213 QSRCTGFRFTPVSSASLKTKAAQIVQDEKMKLSDDGLDALVKIARGDMRRLLNCMQASHL 272
Query: 249 A--SQQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVRE 306
A +++ + V+ G P P ++ + LL F K + E+ KG A+ D V
Sbjct: 273 AHPGEEVNADIVHRTLGLPPPSEVTTMFERLLVADFFACCKELDELVTAKGYAMRDWVIA 332
Query: 307 VTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDKLQLGSIISTF 352
+ + P++V + ++ LAD+E RL+ G ++ +Q+ ++++ F
Sbjct: 333 FHERILLVDWPANVLITFVSRLADLEERLATGASEAVQMHAVVAAF 378
>gi|401403730|ref|XP_003881552.1| putative activator 1 36 kDa [Neospora caninum Liverpool]
gi|325115965|emb|CBZ51519.1| putative activator 1 36 kDa [Neospora caninum Liverpool]
Length = 403
Score = 276 bits (707), Expect = 8e-72, Method: Compositional matrix adjust.
Identities = 151/391 (38%), Positives = 220/391 (56%), Gaps = 47/391 (12%)
Query: 1 MAEAETVSLMDFDEDENQNLKPKDNGKNVIVSGTPP---DIKASPWVEKYRPQSLADVAA 57
MA+ E V+ D + +P S PP +A PWVEKYRP+ L DV A
Sbjct: 1 MAQTEGVTNSDSPRSAEASERP--------ASKLPPHGLSERALPWVEKYRPERLDDVLA 52
Query: 58 HRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRG 117
H DI+ TI + +LPHLL +GPPGTGKTSTILAVA++ YG+ +LELNASDDRG
Sbjct: 53 HDDIIRTIRHYVEKGQLPHLLFHGPPGTGKTSTILAVAKEFYGSAVRTHVLELNASDDRG 112
Query: 118 IDVVRQQIQDFASTQSFSF----------------------------------GVKASVK 143
I+ VR+QI+ FA T S SF G S+K
Sbjct: 113 INTVREQIKTFAETSSTSFHGQGRLMFGKPAAPTASAEKEEASSLAQSQEKRGGAGPSLK 172
Query: 144 LVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPV 203
L++LDEAD MT AQ ALRR++E Y +N RF LICN +NKI PA+QSRCT FRF P+ +
Sbjct: 173 LIILDEADQMTNAAQNALRRIMEAYARNVRFCLICNFINKITPAIQSRCTGFRFTPVSSL 232
Query: 204 HVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMA--SQQITEEAVYLC 261
+ ++ + E E + +++ GL ALV++ GDMR+ LN +Q++H+A + + + V+
Sbjct: 233 SLKQKAAQIAEEETMKLSDDGLDALVKIARGDMRRLLNCMQASHLAHPGEVVNADIVHRT 292
Query: 262 TGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVR 321
G P P ++ + LL F K + E+ KG A+ D V + ++ P +V
Sbjct: 293 LGLPPPSEVTAMFERLLVADFFACCKELDELVNTKGYAMRDWVIAFHERILRVDWPVNVL 352
Query: 322 VRLMNDLADIEYRLSFGCNDKLQLGSIISTF 352
+ ++ LAD+E RL+ G ++ +Q+ ++++ F
Sbjct: 353 ITFVSRLADLEERLATGASEAVQMHAVVAAF 383
>gi|82540400|ref|XP_724521.1| replication factor C3 [Plasmodium yoelii yoelii 17XNL]
gi|23479189|gb|EAA16086.1| replication factor C3 [Plasmodium yoelii yoelii]
Length = 344
Score = 276 bits (706), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 137/321 (42%), Positives = 211/321 (65%), Gaps = 3/321 (0%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP L D+ +H ++ TI + + LPHLLL+GPPGTGKTSTILAV ++LYG
Sbjct: 14 PWVEKYRPGVLNDIISHEQVISTIRKFVEKGELPHLLLHGPPGTGKTSTILAVCKELYGE 73
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQS-FSFGVKASVKLVLLDEADAMTKDAQFA 160
+ +LELNASDDRGI VVR+QI+ FA +++ ++ + S+KL++LDEAD MT AQ A
Sbjct: 74 SRSSFVLELNASDDRGITVVREQIKTFAESKNHYNICERTSLKLIILDEADHMTFPAQNA 133
Query: 161 LRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDV 220
+RR++E Y KN RF LICN VNKI PA+QSRCT FRF+PL+ ++ + + ++E +++
Sbjct: 134 MRRIMENYAKNVRFCLICNYVNKITPAIQSRCTSFRFSPLKEEYMLNKALDIAKSENVNL 193
Query: 221 TEGGLAALVRLCNGDMRKALNILQSTHMASQQ-ITEEAVYLCTGN-PLPKDIEQISYWLL 278
T+ G+ +L+R+ GDMR+ LN LQ ++ + + +E V L T + PLP +I+ I L
Sbjct: 194 TKNGVESLIRVGRGDMRRILNCLQVVSLSHKNMVIDENVILSTLDIPLPSEIKFILEHLT 253
Query: 279 NESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFG 338
+ +S++ I++++ KG ++ DI+ + V P L+ + +IE R + G
Sbjct: 254 KSTIKESYEIITKLQEDKGYSIKDIMICLYETVLTYDYPDSAICLLLKNFGEIEERCASG 313
Query: 339 CNDKLQLGSIISTFTQARSAI 359
+++ L S+IS F + R+ +
Sbjct: 314 ATEQITLSSLISAFIEFRNEL 334
>gi|399215831|emb|CCF72519.1| unnamed protein product [Babesia microti strain RI]
Length = 347
Score = 275 bits (703), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 144/332 (43%), Positives = 211/332 (63%), Gaps = 14/332 (4%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PW EKYRP L + +H+DI++TI T ++PHLL +GPPGTGKTSTILA+++ LYG
Sbjct: 7 PWTEKYRPPDLDSIISHKDIINTIKSFTEVGQIPHLLFHGPPGTGKTSTILAISKHLYGN 66
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFA--------STQSFSFGVKASVKLVLLDEADAM 153
+ +LELNASDDRGI+VVR +I+ FA S+ + + VK ++KL++LDEAD M
Sbjct: 67 YANVYVLELNASDDRGINVVRDKIKTFAEALNRFVPSSDNPANQVKTNLKLIILDEADQM 126
Query: 154 TKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVI 213
T +Q ALRR++E Y KN RF LICN ++KII +QSRCT FRF+PL+ + R +
Sbjct: 127 TNASQGALRRIMEIYAKNVRFCLICNYMHKIISPIQSRCTGFRFSPLDENDLRRRTLEIA 186
Query: 214 EAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMA---SQQ---ITEEAVYLCTGNPLP 267
EG+ + E GL+AL+ + GDMRK LN Q M+ SQ I + +G PL
Sbjct: 187 TNEGITLEENGLSALIEIAQGDMRKVLNTFQIAAMSKLDSQDRNIIDVNDILNASGTPLE 246
Query: 268 KDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMND 327
+++ I L+ +F++ + I ++ KG +L D+V + + KI P+ V V+L+
Sbjct: 247 DEVKSIFNALVQSTFSECIQIIRHVQELKGYSLQDLVTCLYKLIIKIDWPTIVIVQLIIR 306
Query: 328 LADIEYRLSFGCNDKLQLGSIISTFTQARSAI 359
+ADIE RL+ G N+ +Q+ +++S FT+AR I
Sbjct: 307 MADIEERLATGANENIQICALVSAFTEARFEI 338
>gi|67610162|ref|XP_667086.1| replication factor C3 [Cryptosporidium hominis TU502]
gi|54658182|gb|EAL36856.1| replication factor C3 [Cryptosporidium hominis]
Length = 377
Score = 272 bits (695), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 145/364 (39%), Positives = 209/364 (57%), Gaps = 49/364 (13%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP L D+ +H+DI++TI++ S +LPHLL +GPPGTGKTSTI A+++ +Y
Sbjct: 7 PWVEKYRPSGLQDLLSHKDIINTIEKFISSGQLPHLLFHGPPGTGKTSTIHAISKCIYKD 66
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFA----STQSFSFGVKASV--------------- 142
+ + M+LELNASDDRGI+VVR I+ F+ +T + S G +++
Sbjct: 67 RKYQMVLELNASDDRGINVVRDAIKSFSESASTTLNHSGGTNSNIEYIEMSDVSTRNLDC 126
Query: 143 --------KLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTR 194
KL++LDEAD MT AQ ALRR++E+Y+++ RF +ICN VNKI PALQSRCTR
Sbjct: 127 NKSLCENIKLIILDEADMMTSTAQMALRRIMERYSEHVRFCIICNYVNKITPALQSRCTR 186
Query: 195 FRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMAS---- 250
FRF+PL + R+ + +E + VT G +L++ GDMRK LN+LQS M++
Sbjct: 187 FRFSPLPIEDIRNRISEIALSERIFVTREGQESLIKSSRGDMRKVLNVLQSCSMSNYGNI 246
Query: 251 ------------------QQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEM 292
I EE ++ G P +++ I L ESF+ F +
Sbjct: 247 QKHKDSGELNGVSIEGLITYINEEMIHRILGIPTKSELDYIFGILSRESFSSGFSALQNS 306
Query: 293 KMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDKLQLGSIISTF 352
+ + G + D V + + P +V LM LADIEYRLS G ++ +QL +I+S F
Sbjct: 307 QNKNGYSTQDFVNGLYSKSMEANWPDEVVPLLMRRLADIEYRLSRGASESIQLAAIVSCF 366
Query: 353 TQAR 356
+ R
Sbjct: 367 HEVR 370
>gi|212224565|ref|YP_002307801.1| DNA replication ATPase [Thermococcus onnurineus NA1]
gi|212009522|gb|ACJ16904.1| ATPase involved in DNA replication [Thermococcus onnurineus NA1]
Length = 326
Score = 271 bits (692), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 128/316 (40%), Positives = 204/316 (64%), Gaps = 3/316 (0%)
Query: 38 IKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARK 97
I PWVEKYRPQ L D+ IV + +PHLL GPPG GKT+ LA+AR+
Sbjct: 10 ILEKPWVEKYRPQRLEDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARE 69
Query: 98 LYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDA 157
L+G + + LELNASD+RGI+V+R+++++FA T+ AS K++ LDEADA+T+DA
Sbjct: 70 LFGEHWRHNFLELNASDERGINVIREKVKEFARTKPIG---GASFKIIFLDEADALTQDA 126
Query: 158 QFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEG 217
Q ALRR +E ++ N RF L CN +KII +QSRC FRF PL + +R+K++ E EG
Sbjct: 127 QQALRRTMEMFSTNVRFILSCNYSSKIIEPIQSRCAIFRFRPLNDNDIAKRIKYIAENEG 186
Query: 218 LDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWL 277
L++TE GL AL+ + GD+R+A+N+LQ+ ++IT+E V+L P+D+ ++
Sbjct: 187 LELTEDGLQALLYVAEGDLRRAINVLQAAAALDRKITDENVFLVASRARPEDVREMMNLA 246
Query: 278 LNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSF 337
L +F + +++ E+ +++GL+ D++ ++ VF + +P D +V L + + + +RL
Sbjct: 247 LEGNFLKAREKLREILLKQGLSGEDVLIQMHKEVFNLTIPEDRKVALADKIGEYNFRLVE 306
Query: 338 GCNDKLQLGSIISTFT 353
G N+ +QL ++++ FT
Sbjct: 307 GANEMIQLEALLAQFT 322
>gi|134083012|emb|CAK42775.1| unnamed protein product [Aspergillus niger]
Length = 342
Score = 270 bits (691), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 142/271 (52%), Positives = 178/271 (65%), Gaps = 31/271 (11%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP +L DV+ H+DI+ TI++ NRLPHLLLYGPPGTGKTSTILA+AR++YGA
Sbjct: 45 PWVEKYRPNTLEDVSGHQDILATINKFVEANRLPHLLLYGPPGTGKTSTILALARRIYGA 104
Query: 102 Q-YHNMILELNASDDRGIDVVRQQIQDFAST-QSFSFGVK---------ASVKLVLLDEA 150
+ M+LELNASDDRGIDVVR+QI+ FAST Q FS AS KL++LDEA
Sbjct: 105 KNMRQMVLELNASDDRGIDVVREQIKTFASTKQIFSMAPSSTSTSSSTLASYKLIILDEA 164
Query: 151 DAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLK 210
DAMT AQ ALRR++EKYT NTRF +I N +K+ PAL SRCTRFRF+PL+ + +
Sbjct: 165 DAMTATAQMALRRIMEKYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKEADIRVLVD 224
Query: 211 HVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMAS-------------------- 250
VIE E +++ + +LVRL GDMR+ALN+LQ+ +S
Sbjct: 225 IVIEKEQVNIQPEAVDSLVRLSKGDMRRALNVLQACFASSIPLPMKNAPKDQEAKEKPEA 284
Query: 251 QQITEEAVYLCTGNPLPKDIEQISYWLLNES 281
+ IT E +Y C P P DIE+I LL S
Sbjct: 285 EVITNETIYDCIAAPHPSDIEEIMTTLLATS 315
>gi|66359384|ref|XP_626870.1| replication factor RFC3 AAA+ ATpase [Cryptosporidium parvum Iowa
II]
gi|46228358|gb|EAK89257.1| replication factor RFC3 AAA+ ATpase [Cryptosporidium parvum Iowa
II]
Length = 383
Score = 270 bits (690), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 144/364 (39%), Positives = 208/364 (57%), Gaps = 49/364 (13%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP L D+ +H+DI++TI++ S +LPHLL +GPPGTGKTSTI A+++ +Y
Sbjct: 13 PWVEKYRPSGLQDLLSHKDIINTIEKFISSGQLPHLLFHGPPGTGKTSTIHAISKCIYKD 72
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFA----STQSFSFGVKASV--------------- 142
+ + M+LELNASDDRGI+VVR I+ F+ +T + S G +++
Sbjct: 73 RKYQMVLELNASDDRGINVVRDAIKSFSESASTTLNHSGGTNSNIEDIEMSDVSTRNLDC 132
Query: 143 --------KLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTR 194
KL++LDEAD MT AQ ALRR++E+Y+++ RF +ICN VNKI PALQSRCTR
Sbjct: 133 NKSLCENIKLIILDEADMMTSTAQMALRRIMERYSEHVRFCIICNYVNKITPALQSRCTR 192
Query: 195 FRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMAS---- 250
FRF+PL + R+ + +E + +T G +L++ GDMRK LN+LQS M++
Sbjct: 193 FRFSPLPIEDIRNRISEIALSERIFITREGQESLIKSSRGDMRKVLNVLQSCSMSNYGNI 252
Query: 251 ------------------QQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEM 292
I EE ++ G P +++ I L ESF+ F +
Sbjct: 253 EKHKDSGELNGASIEGLITYINEEMIHRILGIPTKSELDYIFGILSRESFSSGFSALQNS 312
Query: 293 KMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDKLQLGSIISTF 352
+ G + D V + + P +V LM LADIEYRLS G ++ +QL +I+S F
Sbjct: 313 QNENGYSTQDFVNGLYSKSMEANWPDEVVPLLMRRLADIEYRLSRGASESIQLAAIVSCF 372
Query: 353 TQAR 356
+ R
Sbjct: 373 HEVR 376
>gi|240104119|ref|YP_002960428.1| Replication factor C, small subunit (rfcS) [Thermococcus
gammatolerans EJ3]
gi|239911673|gb|ACS34564.1| Replication factor C, small subunit (rfcS) [Thermococcus
gammatolerans EJ3]
Length = 333
Score = 270 bits (689), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 126/312 (40%), Positives = 203/312 (65%), Gaps = 3/312 (0%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRPQ L D+ IV + +PHLL GPPGTGKTS LA+AR+L+G
Sbjct: 17 PWVEKYRPQRLDDIVGQEHIVKRLKHYAKTGSMPHLLFAGPPGTGKTSAALALARELFGE 76
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFAL 161
+ + LELNASD+RGI+V+R+++++FA T+ AS K++ LDEADA+T+DAQ AL
Sbjct: 77 NWRHNFLELNASDERGINVIREKVKEFARTKPIG---GASFKIIFLDEADALTQDAQQAL 133
Query: 162 RRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVT 221
RR +E ++ N RF L CN +KII +QSRC FRF PL + +R++++ E EGL++T
Sbjct: 134 RRTMEMFSNNVRFILSCNYSSKIIEPIQSRCAIFRFRPLNDEDIAKRIRYIAEQEGLELT 193
Query: 222 EGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNES 281
E GL A++ + GD+R+A+N+LQ+ ++IT+E V+L P+D+ ++ L +
Sbjct: 194 EEGLQAILYVAEGDLRRAINVLQAAAALDKKITDENVFLVASRARPEDVREMMTLALEGN 253
Query: 282 FADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCND 341
F + ++ ++ +++GL+ D++ ++ VF + +P D +V L + + + +RL G N+
Sbjct: 254 FLKARDKLRDILLKQGLSGEDVLIQMHKEVFNLPIPEDKKVALADKIGEYNFRLVEGANE 313
Query: 342 KLQLGSIISTFT 353
+QL ++++ FT
Sbjct: 314 MIQLEALLAQFT 325
>gi|440297885|gb|ELP90526.1| replication factor C subunit, putative [Entamoeba invadens IP1]
Length = 328
Score = 269 bits (688), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 131/305 (42%), Positives = 195/305 (63%), Gaps = 8/305 (2%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP +++ V H I++++ + S N+LPHLL YGPPGTGKT+T LA+ +++ G
Sbjct: 8 PWVEKYRPTTISGVQGHEYILESLQQFISANQLPHLLFYGPPGTGKTTTALAIVKQICGP 67
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFAL 161
+Y ++LELNASD+RGI+VVR+QI+ FAST++ K ++LDE+D +TKDAQ AL
Sbjct: 68 KYTALVLELNASDERGINVVREQIKSFASTRTL---YTNCTKFIVLDESDKLTKDAQNAL 124
Query: 162 RRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVT 221
RR +E+Y+ N RF ICN+VN I PA+QSRC +FRF PL P + + +KH+ + E + V
Sbjct: 125 RRTLEQYSGNCRFVFICNEVNLITPAIQSRCAKFRFGPLSPEALKKIMKHITDEEKMVVD 184
Query: 222 EGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNES 281
E +L+ + GD R +N LQ+ M QI+ E ++ G P P+ I I +L+
Sbjct: 185 EDAQQSLIDISKGDARTIINTLQALSMTCNQISNETLFAMVGLPTPQQITNIFVQMLSSD 244
Query: 282 FADSFKRISEMKMRKGLALVDIVREVTMFVFKIK----MPSDVRVRLMNDLADIEYRLSF 337
F ++K I ++ + GL+L DI+ V + IK + + R++ + LA IE LS
Sbjct: 245 FIGAYKAIEDL-IVGGLSLNDIINRVVPKLVDIKVREGIDKNARIKCVTALATIERNLSV 303
Query: 338 GCNDK 342
G N+K
Sbjct: 304 GGNEK 308
>gi|339242621|ref|XP_003377236.1| replication factor C subunit 5 [Trichinella spiralis]
gi|316973978|gb|EFV57519.1| replication factor C subunit 5 [Trichinella spiralis]
Length = 340
Score = 269 bits (688), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 150/317 (47%), Positives = 199/317 (62%), Gaps = 56/317 (17%)
Query: 44 VEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA-Q 102
VEKYRP L ++ +H+DI++TI R +ENRLPHLL YGPPGTGKTSTILA A++LY Q
Sbjct: 5 VEKYRPSKLEELISHKDILETIGRFINENRLPHLLFYGPPGTGKTSTILACAKQLYEKNQ 64
Query: 103 YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALR 162
+M+LELNASDDRGI VVR+QI +FAST++ FG K+++LDEADAMT+DAQ ALR
Sbjct: 65 LKSMVLELNASDDRGIGVVREQILNFASTKTI-FG--GRFKMIILDEADAMTRDAQNALR 121
Query: 163 RVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTE 222
R K+T+ E L+H
Sbjct: 122 RSKVKFTE------------------------------------EGLQH----------- 134
Query: 223 GGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESF 282
LV L GDMR+ALNILQST MA + E VY C G P P DI+ I WL N+ F
Sbjct: 135 -----LVLLSGGDMRRALNILQSTAMAFDMVNMENVYACVGKPKPDDIKAIVEWLFNKDF 189
Query: 283 ADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDK 342
++++KRI+ +K++KGLAL DI+ EV +FV K+++P+ VR+ L++ LA+IE L+ G +DK
Sbjct: 190 SETYKRITFLKLKKGLALQDILEEVHLFVQKVEIPALVRIYLIDRLAEIEESLTRGASDK 249
Query: 343 LQLGSIISTFTQARSAI 359
LQL ++I+ F AR I
Sbjct: 250 LQLSALIAAFHIARDII 266
>gi|68067050|ref|XP_675496.1| replication factor C3 [Plasmodium berghei strain ANKA]
gi|56494714|emb|CAH95400.1| replication factor C3, putative [Plasmodium berghei]
Length = 329
Score = 268 bits (686), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 135/319 (42%), Positives = 209/319 (65%), Gaps = 3/319 (0%)
Query: 44 VEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQY 103
VEKYRP L D+ +H ++ TI + + LPHLLL+GPPGTGKTSTILAV ++LYG
Sbjct: 1 VEKYRPSVLNDIISHEQVISTIRKFVEKGELPHLLLHGPPGTGKTSTILAVCKELYGESR 60
Query: 104 HNMILELNASDDRGIDVVRQQIQDFASTQS-FSFGVKASVKLVLLDEADAMTKDAQFALR 162
+ +LELNASDDRGI VVR+QI+ FA +++ ++ + S+KL++LDEAD MT AQ A+R
Sbjct: 61 SSFVLELNASDDRGITVVREQIKTFAESKNHYNICERTSLKLIILDEADHMTFPAQNAMR 120
Query: 163 RVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTE 222
R++E Y KN RF LICN VNKI PA+QSRCT FRF+PL+ ++ + + ++E +++T+
Sbjct: 121 RIMENYAKNVRFCLICNYVNKITPAIQSRCTSFRFSPLKEEYMLNKALDIAKSENVNLTK 180
Query: 223 GGLAALVRLCNGDMRKALNILQSTHMASQQ-ITEEAVYLCTGN-PLPKDIEQISYWLLNE 280
G+ +L+R+ GDMR+ LN LQ ++ + + +E V L T + PLP +I+ I L
Sbjct: 181 NGVESLIRVGRGDMRRILNCLQVVSLSHKNMVIDENVILSTLDIPLPTEIKFILEHLTKS 240
Query: 281 SFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCN 340
+ +S++ I++++ KG ++ DI+ + V P L+ + +IE R + G
Sbjct: 241 TIKESYEIITKLQEDKGYSIKDIMICLYETVLTYDYPDSAICLLLKNFGEIEERCASGTT 300
Query: 341 DKLQLGSIISTFTQARSAI 359
+++ L S+IS F + R+ +
Sbjct: 301 EQITLSSLISAFIEFRNEL 319
>gi|15988297|pdb|1IQP|A Chain A, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
gi|15988298|pdb|1IQP|B Chain B, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
gi|15988299|pdb|1IQP|C Chain C, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
gi|15988300|pdb|1IQP|D Chain D, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
gi|15988301|pdb|1IQP|E Chain E, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
gi|15988302|pdb|1IQP|F Chain F, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
Length = 327
Score = 265 bits (677), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 126/312 (40%), Positives = 201/312 (64%), Gaps = 3/312 (0%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRPQ L D+ IV + +PHLL GPPG GKT+ LA+AR+L+G
Sbjct: 14 PWVEKYRPQRLDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELFGE 73
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFAL 161
+ + LELNASD+RGI+V+R+++++FA T+ AS K++ LDEADA+T+DAQ AL
Sbjct: 74 NWRHNFLELNASDERGINVIREKVKEFARTKPIG---GASFKIIFLDEADALTQDAQQAL 130
Query: 162 RRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVT 221
RR +E ++ N RF L CN +KII +QSRC FRF PL + +RL+++ E EGL++T
Sbjct: 131 RRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLELT 190
Query: 222 EGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNES 281
E GL A++ + GDMR+A+NILQ+ ++IT+E V++ P+DI ++ L +
Sbjct: 191 EEGLQAILYIAEGDMRRAINILQAAAALDKKITDENVFMVASRARPEDIREMMLLALKGN 250
Query: 282 FADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCND 341
F + +++ E+ +++GL+ D++ ++ VF + + +V L + + + +RL G N+
Sbjct: 251 FLKAREKLREILLKQGLSGEDVLVQMHKEVFNLPIEEPKKVLLADKIGEYNFRLVEGANE 310
Query: 342 KLQLGSIISTFT 353
+QL ++++ FT
Sbjct: 311 IIQLEALLAQFT 322
>gi|70949672|ref|XP_744225.1| replication factor C3 [Plasmodium chabaudi chabaudi]
gi|56524090|emb|CAH80967.1| replication factor C3, putative [Plasmodium chabaudi chabaudi]
Length = 328
Score = 263 bits (672), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 135/319 (42%), Positives = 208/319 (65%), Gaps = 4/319 (1%)
Query: 44 VEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQY 103
VEKYRP L D+ +H ++ TI + + LPHLLL+GPPGTGKTSTILAV ++LYG
Sbjct: 1 VEKYRPGVLNDIISHEQVISTIRKFVEKGELPHLLLHGPPGTGKTSTILAVCKELYGDSR 60
Query: 104 HNMILELNASDDRGIDVVRQQIQDFASTQS-FSFGVKASVKLVLLDEADAMTKDAQFALR 162
+ +LELNASDDRGI VVR+QI+ FA +++ ++ + S+KL++LDEAD MT AQ A+R
Sbjct: 61 SSFVLELNASDDRGITVVREQIKTFAESKNHYNICERTSLKLIILDEADHMTFPAQNAMR 120
Query: 163 RVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTE 222
R++E Y KN RF LICN VNKI PA+QSRCT FRF PL+ ++ + + ++E +++T+
Sbjct: 121 RIMENYAKNVRFCLICNYVNKITPAIQSRCTSFRF-PLKEEYMLNKALDIAKSENVNITK 179
Query: 223 GGLAALVRLCNGDMRKALNILQSTHMASQQ-ITEEAVYLCTGN-PLPKDIEQISYWLLNE 280
G+ +L+R+ GDMR+ LN LQ ++ + + +E V L T + PLP +I+ I L
Sbjct: 180 NGVESLIRVGRGDMRRILNCLQVVSLSHKNMVIDENVILSTLDIPLPSEIKFILEHLTKS 239
Query: 281 SFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCN 340
+ +S++ I++++ KG ++ DI+ + V P L+ + +IE R + G
Sbjct: 240 TIKESYEIITKLQEDKGYSIKDIMICLYEAVLTYDYPDSAICLLLKNFGEIEERCASGAT 299
Query: 341 DKLQLGSIISTFTQARSAI 359
+++ L S+IS F + R+ +
Sbjct: 300 EQITLSSLISAFIEFRNEL 318
>gi|15791090|ref|NP_280914.1| replication factor C small subunit [Halobacterium sp. NRC-1]
gi|169236842|ref|YP_001690042.1| replication factor C small subunit [Halobacterium salinarum R1]
gi|42559530|sp|Q9HN27.1|RFCS_HALSA RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|226739141|sp|B0R7H7.1|RFCS_HALS3 RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|10581691|gb|AAG20394.1| replication factor C small subunit [Halobacterium sp. NRC-1]
gi|167727908|emb|CAP14696.1| replication factor C small subunit [Halobacterium salinarum R1]
Length = 322
Score = 263 bits (671), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 131/309 (42%), Positives = 196/309 (63%), Gaps = 4/309 (1%)
Query: 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 102
WVEKYRP+ L DV H DI + + + LPHLL GP GTGKT++ +++A++LYG
Sbjct: 12 WVEKYRPERLEDVVGHPDITERLQSYVDRDDLPHLLFAGPAGTGKTASSVSIAKELYGDD 71
Query: 103 YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALR 162
+ + LELNASD+RGIDVVR +I+DFA + SFG + +++ LDEADA+T DAQ ALR
Sbjct: 72 WQDNFLELNASDERGIDVVRDRIKDFARS---SFGGH-NYRVIFLDEADALTDDAQSALR 127
Query: 163 RVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTE 222
R +E+++ NTRF L CN +KII +QSRC FRFA L V L+ + E EGL+ T+
Sbjct: 128 RTMEQFSNNTRFILSCNYSSKIIDPIQSRCAVFRFAQLGDDAVAAHLREIAETEGLEHTD 187
Query: 223 GGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESF 282
G+ ALV +GDMR+A+N LQ+ + EE VY T P++IE + L F
Sbjct: 188 DGIDALVYAADGDMRRAINALQAASATGDSVNEETVYAITATARPEEIETMVTEALGGDF 247
Query: 283 ADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDK 342
A + + ++ +GLA DI+ +V V++ + VRL++ L + +YR++ G N++
Sbjct: 248 AAARATLDDLLTNRGLAGGDIIDQVHRSVWEFDVEEAAAVRLLDRLGEADYRIAEGANER 307
Query: 343 LQLGSIIST 351
+QL +++++
Sbjct: 308 VQLEALLAS 316
>gi|337285093|ref|YP_004624567.1| Replication factor C, small subunit (rfcS) [Pyrococcus yayanosii
CH1]
gi|334901027|gb|AEH25295.1| Replication factor C, small subunit (rfcS) [Pyrococcus yayanosii
CH1]
Length = 326
Score = 262 bits (670), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 124/312 (39%), Positives = 202/312 (64%), Gaps = 3/312 (0%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRPQ L D+ I+ + +PHLL GPPGTGKT++ LA+AR+L+G
Sbjct: 14 PWVEKYRPQRLDDIVGQEHIIKRLKHYVKTGSMPHLLFAGPPGTGKTTSALALARELFGE 73
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFAL 161
+ + LELNASD+RGI+V+R+++++FA T+ AS K++ LDEADA+T+DAQ AL
Sbjct: 74 NWRHNFLELNASDERGINVIREKVKEFARTKPIG---GASFKIIFLDEADALTQDAQQAL 130
Query: 162 RRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVT 221
RR +E ++ N RF L N ++II +QSRC FRF PL V +RLK++ E EGL++T
Sbjct: 131 RRTMEMFSNNVRFILSANYSSRIIEPIQSRCAIFRFRPLSDEDVAKRLKYIAEQEGLELT 190
Query: 222 EGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNES 281
E GL A++ + GD+R+A+N+LQ+ ++IT+E V+ P+DI ++ L +
Sbjct: 191 EEGLQAILYVAEGDLRRAINVLQAAAALDKKITDENVFTVASRARPEDIREMMLLALEGN 250
Query: 282 FADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCND 341
F + +++ E+ +++GL+ D++ ++ VF + + +V+L + + + +RL G N+
Sbjct: 251 FLKAREKLREILLKQGLSGEDVLIQMHREVFNLPISEPKKVQLADKIGEYNFRLVEGANE 310
Query: 342 KLQLGSIISTFT 353
+QL ++++ FT
Sbjct: 311 MIQLEALLAQFT 322
>gi|409728331|ref|ZP_11271198.1| replication factor C small subunit [Halococcus hamelinensis 100A6]
gi|448722058|ref|ZP_21704598.1| replication factor C small subunit [Halococcus hamelinensis 100A6]
gi|445790282|gb|EMA40949.1| replication factor C small subunit [Halococcus hamelinensis 100A6]
Length = 323
Score = 261 bits (667), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 128/306 (41%), Positives = 190/306 (62%), Gaps = 4/306 (1%)
Query: 39 KASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKL 98
+ W+EKYRPQ L+ VA H DIV ++ +++ LPHLL GP G GKT++ +A+AR++
Sbjct: 9 RGEIWIEKYRPQRLSAVAGHADIVGRLESYVAQDDLPHLLFTGPAGVGKTTSAMAIAREV 68
Query: 99 YGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQ 158
YG + LELNASD+RGIDVVR +I++FA SFG +++ LDEADA+T DAQ
Sbjct: 69 YGDDWRENFLELNASDERGIDVVRDRIKNFARA---SFG-GYDYRIIFLDEADALTSDAQ 124
Query: 159 FALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGL 218
ALRR +E++ NTRF L CN N+II +QSRC FRF PL+ V E ++ + E EG+
Sbjct: 125 SALRRTMEQFANNTRFILSCNYSNQIIDPIQSRCAVFRFGPLDGDSVAEYVRRIAEEEGI 184
Query: 219 DVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLL 278
++TE G+ ALV +GDMRKA+N LQ+ + + EEAVY T P+ IE + L
Sbjct: 185 EITEDGIDALVYAADGDMRKAINGLQAAATTGETVDEEAVYAITAAVRPEQIETMVTTAL 244
Query: 279 NESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFG 338
+ F + ++ ++ GL D++ ++ + + VRL+ + + +YR+S G
Sbjct: 245 DGDFTAARAKLDDLLTEAGLGGGDVIDQLHRSAWSFDLDDRATVRLLERVGETDYRISQG 304
Query: 339 CNDKLQ 344
N++LQ
Sbjct: 305 ANERLQ 310
>gi|448417391|ref|ZP_21579327.1| replication factor C small subunit [Halosarcina pallida JCM 14848]
gi|445677879|gb|ELZ30375.1| replication factor C small subunit [Halosarcina pallida JCM 14848]
Length = 329
Score = 261 bits (666), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 129/303 (42%), Positives = 193/303 (63%), Gaps = 4/303 (1%)
Query: 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 102
W+EKYRPQ+L DV DIVD + ++ LPHLL GP G GKT++ A+AR +YG
Sbjct: 16 WIEKYRPQTLEDVYGQEDIVDRLRSYIEQDDLPHLLFAGPAGVGKTTSATAIARAVYGDD 75
Query: 103 YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALR 162
+ LELNASD+RGIDVVR +I++FA SFG +++ LDEAD++T DAQ ALR
Sbjct: 76 WRGNFLELNASDERGIDVVRDRIKNFARA---SFG-GYDYRIIFLDEADSLTSDAQSALR 131
Query: 163 RVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTE 222
R +E+++ NTRF L CN +KII +QSRC FRF+PL V ++++ + E EG+++TE
Sbjct: 132 RTMEQFSDNTRFVLSCNYSSKIIDPIQSRCAVFRFSPLGDDAVRKQVEAIAETEGIELTE 191
Query: 223 GGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESF 282
GL ALV GDMR+A+N LQ+ + + EEAVYL T P+DIE++ ++ F
Sbjct: 192 DGLDALVYAAGGDMRRAINSLQAAATTGEVVDEEAVYLITSTARPEDIEEMVQSAIDGEF 251
Query: 283 ADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDK 342
+ ++ + + G+A DI+ ++ V++ + VRLM + + +YR++ G N++
Sbjct: 252 LAARSKLETLLVDTGMAGGDIIDQLHRSVWEFDLDERATVRLMERIGEADYRITEGANEQ 311
Query: 343 LQL 345
+QL
Sbjct: 312 VQL 314
>gi|448664377|ref|ZP_21684180.1| replication factor C small subunit [Haloarcula amylolytica JCM
13557]
gi|445775022|gb|EMA26036.1| replication factor C small subunit [Haloarcula amylolytica JCM
13557]
Length = 325
Score = 260 bits (665), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 127/313 (40%), Positives = 196/313 (62%), Gaps = 4/313 (1%)
Query: 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 102
W+EKYRPQ+L DV H +IV + S N L H+L GP GTGKT+ A+AR+LYG
Sbjct: 16 WIEKYRPQTLDDVMGHENIVGRLKSYVSRNDLSHMLFSGPAGTGKTTCATAIARELYGED 75
Query: 103 YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALR 162
+ LELNASD+RGIDVVR +I++FA T SFG +++ LDEADA+T DAQ ALR
Sbjct: 76 WREHFLELNASDERGIDVVRDRIKNFART---SFG-GVEYRIIFLDEADALTSDAQSALR 131
Query: 163 RVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTE 222
R +E+++ N RF L CN ++II +QSRC FRF+PL V E ++++ EG+++TE
Sbjct: 132 RTMEQFSNNVRFILSCNYSSQIIDPIQSRCAVFRFSPLADDAVAEEIRNIAAEEGIELTE 191
Query: 223 GGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESF 282
GL ALV +GDMRKA+N LQ+ ++ + E AVY T P++I + L+ F
Sbjct: 192 DGLDALVYAADGDMRKAINGLQAASVSGDTVDESAVYAITSTARPEEIRTMVQSALDGDF 251
Query: 283 ADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDK 342
S + + +G+A DI+ ++ +++ + + VR++ + + +YR++ G N++
Sbjct: 252 TASRATLDRLLTEEGIAGGDIIDQLHRSIWEFDIEDEAAVRVLERIGETDYRITRGANER 311
Query: 343 LQLGSIISTFTQA 355
+QL +++++ Q
Sbjct: 312 VQLEAMLASLAQG 324
>gi|448730730|ref|ZP_21713035.1| replication factor C small subunit [Halococcus saccharolyticus DSM
5350]
gi|445793171|gb|EMA43761.1| replication factor C small subunit [Halococcus saccharolyticus DSM
5350]
Length = 325
Score = 260 bits (665), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 129/302 (42%), Positives = 190/302 (62%), Gaps = 4/302 (1%)
Query: 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 102
W+EKYRP++LADV H +IV ++ ++N LPHLL GP G GKT++ +A+AR++YG
Sbjct: 15 WIEKYRPETLADVVGHENIVGRLESYVAQNDLPHLLFSGPAGVGKTTSSMAIAREVYGDD 74
Query: 103 YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALR 162
+ LELNASD+RGIDVVR +I+DFA T SFG +++ LDEADA+T DAQ ALR
Sbjct: 75 WRENFLELNASDERGIDVVRDRIKDFART---SFG-GYDYRIIFLDEADALTSDAQSALR 130
Query: 163 RVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTE 222
R +E++ NTRF L CN ++II +QSRC FRF PL V E ++ V E EG++VT+
Sbjct: 131 RTMEQFANNTRFILSCNYSSQIIDPIQSRCAVFRFGPLAEEAVGEYIRRVAENEGIEVTD 190
Query: 223 GGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESF 282
G+ ALV +GDMRKALN LQ+ + +EAVY T P++IE + L+ F
Sbjct: 191 DGVDALVYAADGDMRKALNGLQAAATMEGAVDDEAVYGITATARPEEIEAMVERALDGDF 250
Query: 283 ADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDK 342
+ ++ ++ GL D++ ++ + + VRL+ + + +YR++ G N++
Sbjct: 251 TAARAKLDDLLTDAGLGGGDVIDQLHRSAWDFDLDDAATVRLLERVGETDYRITQGANER 310
Query: 343 LQ 344
LQ
Sbjct: 311 LQ 312
>gi|147918695|ref|YP_687582.1| replication factor C small subunit [Methanocella arvoryzae MRE50]
gi|121687726|sp|Q0W037.1|RFCS_UNCMA RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|110622978|emb|CAJ38256.1| replication factor C (clamp loader), small subunit [Methanocella
arvoryzae MRE50]
Length = 322
Score = 259 bits (661), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 124/310 (40%), Positives = 192/310 (61%), Gaps = 3/310 (0%)
Query: 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 102
W EKYRP+ L DV H+ I + LPHLL GPPG GKT+ +A+AR+LYG
Sbjct: 7 WTEKYRPRRLEDVIGHQQITRRLISYVKSGNLPHLLFSGPPGVGKTACAVALARELYGET 66
Query: 103 YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALR 162
+H+ +ELNASD+RGIDVVR I++FA T +A K++ LDEADA+T DAQ ALR
Sbjct: 67 WHSNFIELNASDERGIDVVRNNIKNFARTAPLG---EAKFKIIFLDEADALTSDAQSALR 123
Query: 163 RVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTE 222
R +E+Y RF + CN +KII +QSRC +RF PL +T + + + EGL + +
Sbjct: 124 RTMERYAATCRFIISCNYSSKIIEPIQSRCAVYRFGPLNATDITTGITRIAKNEGLKIEK 183
Query: 223 GGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESF 282
G+ AL+ + GDMR+A+N LQS ++ IT + +Y T PK+IE + LN F
Sbjct: 184 DGMDALIYVARGDMRRAINALQSAATIAKDITADVIYQTTSTAKPKEIEDMLKLALNGQF 243
Query: 283 ADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDK 342
DS ++ E+ + GL+ DI+ ++ +F++ + DV V L++ + + ++RL+ G +++
Sbjct: 244 MDSRNKLDELLITYGLSGTDIIDQIYRSMFELGLDEDVLVALVDRIGEADFRLTEGASER 303
Query: 343 LQLGSIISTF 352
+Q+ ++++ F
Sbjct: 304 IQIEALLAHF 313
>gi|315230688|ref|YP_004071124.1| replication factor C small subunit [Thermococcus barophilus MP]
gi|315183716|gb|ADT83901.1| replication factor C small subunit [Thermococcus barophilus MP]
Length = 326
Score = 259 bits (661), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 124/316 (39%), Positives = 200/316 (63%), Gaps = 3/316 (0%)
Query: 38 IKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARK 97
I PWVEKYRPQ L D+ IV + +PHLL GPPG GKT+ L + R+
Sbjct: 10 ILEKPWVEKYRPQRLDDIVGQDHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALCLTRE 69
Query: 98 LYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDA 157
L+G + + LELNASD+RGI+V+R+++++FA T+ AS K++ LDEADA+T+DA
Sbjct: 70 LFGEHWRHNFLELNASDERGINVIREKVKEFARTKPIG---GASFKIIFLDEADALTQDA 126
Query: 158 QFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEG 217
Q ALRR++E ++ N RF L CN +KII +QSRC FRF PL+ + +R++ + E EG
Sbjct: 127 QQALRRMMEMFSNNVRFILSCNYSSKIIEPIQSRCAIFRFRPLKDEDIAKRIRFIAENEG 186
Query: 218 LDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWL 277
L++TE GL AL+ + GD+R+A+N+LQ+ +IT+E V+L P+DI ++
Sbjct: 187 LELTEEGLQALLYIAEGDLRRAINVLQAAAALDTKITDENVFLVASRARPEDIREMMLMA 246
Query: 278 LNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSF 337
L +F + +++ E+ +++GL+ D++ ++ VF + + +V L + + + +RL
Sbjct: 247 LEGNFLKAREKLREILLKQGLSGEDVLIQMHKEVFNLPISEPKKVALADKIGEYNFRLVE 306
Query: 338 GCNDKLQLGSIISTFT 353
G N+ +QL ++++ FT
Sbjct: 307 GANEMIQLEALLAQFT 322
>gi|448408398|ref|ZP_21574193.1| replication factor C small subunit [Halosimplex carlsbadense 2-9-1]
gi|445674253|gb|ELZ26797.1| replication factor C small subunit [Halosimplex carlsbadense 2-9-1]
Length = 327
Score = 258 bits (660), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 124/309 (40%), Positives = 195/309 (63%), Gaps = 4/309 (1%)
Query: 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 102
W+EKYRPQ+L ++ DIV+ + N L H + GP G GKT++ A+AR+LYG
Sbjct: 18 WIEKYRPQTLDEIVGQEDIVERLQSYVDRNDLSHFMFSGPAGIGKTTSATAIARELYGDD 77
Query: 103 YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALR 162
+ + LELNASD+RGIDVVR +I++FA T SFG +++ LDEADA+T DAQ ALR
Sbjct: 78 WRDNFLELNASDERGIDVVRDRIKNFART---SFG-GYEYRIIFLDEADALTSDAQGALR 133
Query: 163 RVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTE 222
R +E+++ N RF L CN ++II +QSRC FRFAPL V E ++H+ EG++ T+
Sbjct: 134 RTMEQFSNNVRFILSCNYSSQIIDPIQSRCAVFRFAPLSDEAVAEEMRHIAGEEGIEFTD 193
Query: 223 GGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESF 282
GL ALV +GDMRKA+N LQ+ + + EEAVY T P++I+++ L F
Sbjct: 194 DGLDALVYAADGDMRKAINALQAASVTGDVVDEEAVYALTSTAKPEEIKEMVDQALAGDF 253
Query: 283 ADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDK 342
+ + + +G+A D++ ++ V++ + + VRL++ + + EYR++ G N++
Sbjct: 254 TAARSTLDRLLTEEGIAGGDVIDQLHRSVWEFDLDDEAAVRLLDRIGETEYRITTGANER 313
Query: 343 LQLGSIIST 351
+QL +++++
Sbjct: 314 IQLEALLAS 322
>gi|67470640|ref|XP_651283.1| replication factor C familiy protein [Entamoeba histolytica
HM-1:IMSS]
gi|56468001|gb|EAL45896.1| replication factor C familiy protein [Entamoeba histolytica
HM-1:IMSS]
gi|407035358|gb|EKE37658.1| replication factor C familiy protein [Entamoeba nuttalli P19]
gi|449710429|gb|EMD49506.1| replication factor C familiy protein, putative [Entamoeba
histolytica KU27]
Length = 325
Score = 258 bits (660), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 124/315 (39%), Positives = 198/315 (62%), Gaps = 8/315 (2%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP + + H I++++ + + N++PH+L YGPPGTGKT+T LA+ ++L G
Sbjct: 4 PWVEKYRPSTTDGIFGHEYILESLKQFINANQIPHMLFYGPPGTGKTTTALAIVKQLCGT 63
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFAL 161
++ ++LELNASD+RGIDVVR QI+ FAST++ K ++LDE+D +TKDAQ AL
Sbjct: 64 KFSALVLELNASDERGIDVVRDQIKSFASTRTL---YTNCTKFIILDESDKLTKDAQNAL 120
Query: 162 RRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVT 221
RR +E+++ N RF ICN+V+ I PA+QSRC + RF PL P +T+ ++++ EG+++
Sbjct: 121 RRTLEQFSANCRFIFICNEVHLITPAIQSRCAKMRFGPLSPDALTKIVENITMKEGMEID 180
Query: 222 EGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNES 281
E +++ + GD R +N LQ+ M +QIT +Y G P P I+ I LL+
Sbjct: 181 EDAKKSIIEISKGDARSIINTLQALSMTCKQITNSTLYTMVGLPTPAQIDDIISELLSSP 240
Query: 282 FADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPS----DVRVRLMNDLADIEYRLSF 337
+ +SF + + ++ GL+L DI+ V + + K+ S R++ + L+ IE LS
Sbjct: 241 YLESFTVVDNL-IKAGLSLNDIIIRVVPKLIEGKLISVLDKTARIQCLYQLSLIEQALSI 299
Query: 338 GCNDKLQLGSIISTF 352
G N++ Q + ++ F
Sbjct: 300 GGNERTQTAAFVAAF 314
>gi|282164500|ref|YP_003356885.1| replication factor C small subunit [Methanocella paludicola SANAE]
gi|282156814|dbj|BAI61902.1| replication factor C small subunit [Methanocella paludicola SANAE]
Length = 332
Score = 258 bits (660), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 125/310 (40%), Positives = 192/310 (61%), Gaps = 3/310 (0%)
Query: 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 102
W EKYRP++L +V IV + LPHLL GPPG GKT+ +A+A+ ++G
Sbjct: 17 WTEKYRPKTLDEVIGQEQIVRRLKSYVKTGNLPHLLFSGPPGVGKTACAVALAKDMFGDT 76
Query: 103 YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALR 162
+ N ELNASD+RGIDVVR I++FA T A K++ LDEADA+T DAQ ALR
Sbjct: 77 WQNNFTELNASDERGIDVVRNNIKNFARTAPLG---DARFKIIFLDEADALTSDAQSALR 133
Query: 163 RVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTE 222
R +E+YT RF + CN +KII +QSRC +RF PL P + + + + EG+ +T+
Sbjct: 134 RTMERYTATCRFIISCNYSSKIIEPIQSRCAVYRFGPLGPKDIETMARRIEKGEGIKITK 193
Query: 223 GGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESF 282
GL A++ + GDMR+A+N LQS S+ IT EAVY T PK+IE++ LN F
Sbjct: 194 DGLDAIIYVARGDMRRAVNALQSASTVSKDITAEAVYETTSTARPKEIEEMLKLALNGQF 253
Query: 283 ADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDK 342
DS ++ ++ ++ GL+ DI+ ++ +F + + DV V L++ + + ++RL+ G N++
Sbjct: 254 MDSRNKLDDLLIKYGLSGSDIIDQIYASMFSLGLDEDVLVALVDRIGEADFRLTEGGNER 313
Query: 343 LQLGSIISTF 352
+Q+ ++++ F
Sbjct: 314 IQVEALLAHF 323
>gi|298675837|ref|YP_003727587.1| replication factor C [Methanohalobium evestigatum Z-7303]
gi|298288825|gb|ADI74791.1| Replication factor C [Methanohalobium evestigatum Z-7303]
Length = 318
Score = 258 bits (659), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 123/316 (38%), Positives = 199/316 (62%), Gaps = 3/316 (0%)
Query: 38 IKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARK 97
+K W+EKYRP L D+ + + + S N LPHLL GPPG GKT+ +A+A++
Sbjct: 1 MKEEIWIEKYRPFKLDDIVGQGEAIKRLKSYISTNNLPHLLFSGPPGVGKTAAAVAIAKE 60
Query: 98 LYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDA 157
L+G +H ELNASD+RGIDVVR +I+DF+ T A K++ LDEADA+T DA
Sbjct: 61 LFGDAWHQNFTELNASDERGIDVVRTKIKDFSKTSPIG---GADFKIIFLDEADALTPDA 117
Query: 158 QFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEG 217
Q ALRR +E+YT N RF L CN +KII +QSRC +RF L V +R++++ E EG
Sbjct: 118 QSALRRTMERYTNNCRFILSCNYSSKIIEPIQSRCAVYRFRSLSYEAVEKRVRYIAEQEG 177
Query: 218 LDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWL 277
L ++E G+ A+ + GDMRKA+N LQ++ + I ++ +Y T P++IE++
Sbjct: 178 LQISEDGVEAIKYVSQGDMRKAINALQASALIDDVIDKDTIYKITATAHPEEIEELVQKA 237
Query: 278 LNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSF 337
L+ +F + + + ++ +GL+ D+V ++ +F + +P + V L++ + +I++RL+
Sbjct: 238 LDGNFKAARETMEKLMSEQGLSGEDVVGQIYRAIFNLDIPEKLMVELVDKIGEIDFRLTE 297
Query: 338 GCNDKLQLGSIISTFT 353
G N+++QL ++++ FT
Sbjct: 298 GANERIQLEALLAHFT 313
>gi|389845694|ref|YP_006347933.1| replication factor C small subunit [Haloferax mediterranei ATCC
33500]
gi|448616684|ref|ZP_21665394.1| replication factor C small subunit [Haloferax mediterranei ATCC
33500]
gi|388243000|gb|AFK17946.1| replication factor C small subunit [Haloferax mediterranei ATCC
33500]
gi|445751339|gb|EMA02776.1| replication factor C small subunit [Haloferax mediterranei ATCC
33500]
Length = 330
Score = 258 bits (659), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 127/302 (42%), Positives = 190/302 (62%), Gaps = 3/302 (0%)
Query: 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 102
W+EKYRPQ+L D+ +IV+ + + LPHLL GP G GKT++ A+AR LYG
Sbjct: 19 WIEKYRPQTLDDIYGQEEIVERLRSYIERDDLPHLLFAGPAGVGKTTSATAIARTLYGDD 78
Query: 103 YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALR 162
+ LELNASD+RGIDVVR +I++FA + SF + ++ LDEAD++T DAQ ALR
Sbjct: 79 WRGNFLELNASDERGIDVVRDRIKNFARS---SFNPERGYTIIFLDEADSLTNDAQSALR 135
Query: 163 RVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTE 222
R +E+++ TRF L CN +KII +QSRC FRF+PL + E+ + + EAEG+++TE
Sbjct: 136 RTMEEFSDKTRFILSCNYSSKIIDPIQSRCAVFRFSPLGDDAIAEQTRDIAEAEGIELTE 195
Query: 223 GGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESF 282
GGL ALV GDMR+A+N LQ+ + + EEAVYL T P+DIE++ ++ F
Sbjct: 196 GGLDALVYAAGGDMRRAINSLQAAATTGEVVDEEAVYLITSTARPEDIEKMVRAAIDGEF 255
Query: 283 ADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDK 342
+ K++ + + G+A DI+ ++ V+ + V LM + + +YR+S G N++
Sbjct: 256 TAARKQLETLIVDTGMAGGDIIDQLHRSVWDFDLDERDAVHLMERIGEADYRISEGANEQ 315
Query: 343 LQ 344
+Q
Sbjct: 316 VQ 317
>gi|448606584|ref|ZP_21659010.1| replication factor C small subunit [Haloferax sulfurifontis ATCC
BAA-897]
gi|445738792|gb|ELZ90304.1| replication factor C small subunit [Haloferax sulfurifontis ATCC
BAA-897]
Length = 327
Score = 258 bits (659), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 129/302 (42%), Positives = 192/302 (63%), Gaps = 4/302 (1%)
Query: 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 102
W+EKYRPQ+ DV DIV+ + + LPHLL GP G GKT++ A+AR +YG
Sbjct: 17 WIEKYRPQTFDDVYGQDDIVERLRSYIERDDLPHLLFAGPAGVGKTTSATAIARAIYGDD 76
Query: 103 YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALR 162
+ LELNASD+RGIDVVR +I++FA + SFG +++ LDEAD++T DAQ ALR
Sbjct: 77 WRGNFLELNASDERGIDVVRDRIKNFARS---SFG-GHDYRVIFLDEADSLTNDAQSALR 132
Query: 163 RVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTE 222
R +E+++ NTRF L CN +KII +QSRC FRF+PL V E+++ + AEG++VTE
Sbjct: 133 RTMEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLGDDAVAEQVRDIAAAEGIEVTE 192
Query: 223 GGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESF 282
GL ALV GDMR+A+N LQ+ + + EEAVY+ T P+DIE++ ++ F
Sbjct: 193 DGLDALVYAAGGDMRRAINSLQAAATTGEVVDEEAVYMITSTARPEDIERMVRNAIDGEF 252
Query: 283 ADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDK 342
+ K++ + + G+A DI+ ++ V++ + VRLM + + +YR+S G N++
Sbjct: 253 TAARKQLETLIVDTGMAGGDIIDQLHRSVWEFDLDEREAVRLMERIGEADYRISEGANEQ 312
Query: 343 LQ 344
+Q
Sbjct: 313 VQ 314
>gi|448680330|ref|ZP_21690647.1| replication factor C small subunit [Haloarcula argentinensis DSM
12282]
gi|445768774|gb|EMA19851.1| replication factor C small subunit [Haloarcula argentinensis DSM
12282]
Length = 325
Score = 258 bits (659), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 127/312 (40%), Positives = 195/312 (62%), Gaps = 4/312 (1%)
Query: 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 102
W+EKYRPQ+L DV H +IV + S N L H+L GP GTGKT+ A+AR+LYG
Sbjct: 16 WIEKYRPQTLDDVMGHENIVGRLKSYVSRNDLSHMLFSGPAGTGKTTCATAIARELYGDD 75
Query: 103 YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALR 162
+ LELNASD+RGIDVVR +I++FA T SFG +++ LDEADA+T DAQ ALR
Sbjct: 76 WREHFLELNASDERGIDVVRDRIKNFART---SFG-GVEYRIIFLDEADALTSDAQSALR 131
Query: 163 RVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTE 222
R +E+++ N RF L CN ++II +QSRC FRF+PL V E ++++ E +++TE
Sbjct: 132 RTMEQFSNNVRFILSCNYSSQIIDPIQSRCAVFRFSPLADDAVAEEIRNIAAEEDIELTE 191
Query: 223 GGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESF 282
GL ALV +GDMRKA+N LQ+ ++ + E AVY T P++I + L+ F
Sbjct: 192 DGLDALVYAADGDMRKAINGLQAASVSGDTVDESAVYAITSTARPEEIRTMVQSALDGDF 251
Query: 283 ADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDK 342
S + + +G+A DI+ ++ +++ + D VR++ + + +YR++ G N++
Sbjct: 252 TASRATLDRLLTEEGIAGGDIIDQLHRSIWEFDIGDDAAVRVLERIGETDYRITRGANER 311
Query: 343 LQLGSIISTFTQ 354
+QL +++++ Q
Sbjct: 312 VQLEAMLASLAQ 323
>gi|57012999|sp|Q5UZE5.2|RFCS_HALMA RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
Length = 325
Score = 257 bits (657), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 127/313 (40%), Positives = 194/313 (61%), Gaps = 4/313 (1%)
Query: 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 102
W+EKYRPQ+L DV H +IV + S N L H+L GP GTGKT+ A+AR+LYG
Sbjct: 16 WIEKYRPQTLDDVMGHENIVGRLKSYVSRNDLSHMLFSGPAGTGKTTCATAIARELYGDD 75
Query: 103 YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALR 162
+ LELNASD+RGIDVVR +I++FA T SFG +++ LDEADA+T DAQ ALR
Sbjct: 76 WREHFLELNASDERGIDVVRDRIKNFART---SFG-GVEYRIIFLDEADALTSDAQSALR 131
Query: 163 RVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTE 222
R +E+++ N RF L CN ++II +QSRC FRF+PL V E ++ + E +++TE
Sbjct: 132 RTMEQFSNNVRFILSCNYSSQIIDPIQSRCAVFRFSPLADDAVAEEIRTIAAEEDIELTE 191
Query: 223 GGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESF 282
GL ALV +GDMRKA+N LQ+ ++ + E AVY T P++I + L+ F
Sbjct: 192 DGLDALVYAADGDMRKAINGLQAASVSGDTVDESAVYAITSTARPEEIRTMVQSALDGDF 251
Query: 283 ADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDK 342
S + + +G+A DI+ ++ +++ + D VR++ + + +YR++ G N++
Sbjct: 252 TASRATLDRLLTEEGIAGGDIIDQLHRSIWEFDIDDDAAVRVLERIGETDYRITRGANER 311
Query: 343 LQLGSIISTFTQA 355
+QL +++++ Q
Sbjct: 312 VQLEAMLASLAQG 324
>gi|300709601|ref|YP_003735415.1| replication factor C small subunit [Halalkalicoccus jeotgali B3]
gi|448297629|ref|ZP_21487674.1| replication factor C small subunit [Halalkalicoccus jeotgali B3]
gi|299123284|gb|ADJ13623.1| replication factor C small subunit [Halalkalicoccus jeotgali B3]
gi|445578957|gb|ELY33355.1| replication factor C small subunit [Halalkalicoccus jeotgali B3]
Length = 329
Score = 257 bits (657), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 126/316 (39%), Positives = 198/316 (62%), Gaps = 4/316 (1%)
Query: 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 102
WVEKYRP +L +V +I D ++R + LP+LL G G GKT+ A+AR++YG
Sbjct: 18 WVEKYRPGTLGEVIGQEEITDRLERYVERDDLPNLLFSGSAGIGKTTCATAIAREVYGED 77
Query: 103 YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALR 162
+ + LELNASDDRGIDVVR +I++FA SFG S +++ LDEAD++T DAQ ALR
Sbjct: 78 WRDNFLELNASDDRGIDVVRGRIKEFARA---SFG-GYSYRIIFLDEADSLTSDAQSALR 133
Query: 163 RVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTE 222
R +E+++ NTRF L CN +KII +QSRC FRF+P+ V ER++ + EG+++T+
Sbjct: 134 RTMEQFSSNTRFILSCNYSSKIIDPIQSRCAVFRFSPISDAAVGERIREIAHIEGIEITD 193
Query: 223 GGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESF 282
GG+ ALV +GDMR+A+N LQ+ + + + EE VY T P++IE + L F
Sbjct: 194 GGVEALVYAADGDMRRAVNSLQAAAVMGETVDEEVVYTITATARPEEIEAMVTSALEGDF 253
Query: 283 ADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDK 342
+ + ++ KGL+ DI+ ++ V+ + + VR ++ + + +YR++ G N++
Sbjct: 254 TTARATLDDLLSNKGLSGGDIIDQLHRSVWDLGLSDREAVRTLDRIGETDYRITEGANER 313
Query: 343 LQLGSIISTFTQARSA 358
+QL + +++ T A A
Sbjct: 314 IQLEAFLASLTLADEA 329
>gi|448381294|ref|ZP_21561497.1| replication factor C small subunit [Haloterrigena thermotolerans
DSM 11522]
gi|445663102|gb|ELZ15856.1| replication factor C small subunit [Haloterrigena thermotolerans
DSM 11522]
Length = 330
Score = 256 bits (654), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 126/321 (39%), Positives = 199/321 (61%), Gaps = 4/321 (1%)
Query: 32 SGTPPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTI 91
+ P K W+EKYRP+ LAD+ H DIV ++ ++ LPHLL GP GTGKT+
Sbjct: 8 AAEPTPGKTEVWIEKYRPELLADIKGHTDIVPRLENYVEQDDLPHLLFAGPAGTGKTTAA 67
Query: 92 LAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEAD 151
A+AR++Y + LELNASD RGIDVVR +I+DFA + SFG S +++ LDEAD
Sbjct: 68 QAIAREVYDDDWRENFLELNASDQRGIDVVRDRIKDFARS---SFG-GYSHRIIFLDEAD 123
Query: 152 AMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKH 211
A+T DAQ ALRR +E+++ NTRF L CN ++II +QSRC FRF L + +++
Sbjct: 124 ALTSDAQSALRRTMEQFSNNTRFILSCNYSSQIIDPIQSRCAVFRFTELTEDAIEAQVRE 183
Query: 212 VIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIE 271
+ EG+DVT+ G+ ALV +GDMRKA+N LQ+ + + + EE V+ T P+++E
Sbjct: 184 IAANEGIDVTDDGVDALVFAADGDMRKAINGLQAAAVMGETVDEETVFAITATARPEEVE 243
Query: 272 QISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADI 331
+ ++ F + + ++ +GLA D++ ++ ++ +P VRL+ L ++
Sbjct: 244 AMVEHAIDGDFTAARAALEDLLTERGLAGGDVIDQLHRSAWEFDVPERATVRLLERLGEV 303
Query: 332 EYRLSFGCNDKLQLGSIISTF 352
+YR++ G N++LQL +++++
Sbjct: 304 DYRITEGANERLQLEAMLASL 324
>gi|448582711|ref|ZP_21646215.1| replication factor C small subunit [Haloferax gibbonsii ATCC 33959]
gi|445732359|gb|ELZ83942.1| replication factor C small subunit [Haloferax gibbonsii ATCC 33959]
Length = 327
Score = 256 bits (654), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 128/302 (42%), Positives = 191/302 (63%), Gaps = 4/302 (1%)
Query: 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 102
W+EKYRPQ+ DV DIV+ + + LPHLL GP G GKT++ A+AR +YG
Sbjct: 17 WIEKYRPQTFDDVYGQDDIVERLRSYIERDDLPHLLFAGPAGVGKTTSATAIARAIYGDD 76
Query: 103 YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALR 162
+ LELNASD+RGIDVVR +I++FA + SFG +++ LDEAD++T DAQ ALR
Sbjct: 77 WRGNFLELNASDERGIDVVRDRIKNFARS---SFG-GHDYRVIFLDEADSLTNDAQSALR 132
Query: 163 RVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTE 222
R +E+++ NTRF L CN +KII +QSRC FRF+PL V E+++ + AE ++VTE
Sbjct: 133 RTMEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLGDDAVAEQVRDIAAAEDIEVTE 192
Query: 223 GGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESF 282
GL ALV GDMR+A+N LQ+ + + EEAVY+ T P+DIE++ ++ F
Sbjct: 193 DGLDALVYAAGGDMRRAINSLQAAATTGEVVDEEAVYMITSTARPEDIEEMVRAAIDGEF 252
Query: 283 ADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDK 342
+ K++ + + G+A DI+ ++ V++ + VRLM + + +YR+S G N++
Sbjct: 253 TTARKQLETLIVDTGMAGGDIIDQLHRSVWEFDLDEREAVRLMERIGEADYRISEGANEQ 312
Query: 343 LQ 344
+Q
Sbjct: 313 VQ 314
>gi|448560589|ref|ZP_21634037.1| replication factor C small subunit [Haloferax prahovense DSM 18310]
gi|445722239|gb|ELZ73902.1| replication factor C small subunit [Haloferax prahovense DSM 18310]
Length = 327
Score = 256 bits (654), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 128/302 (42%), Positives = 191/302 (63%), Gaps = 4/302 (1%)
Query: 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 102
W+EKYRPQ+ DV DIV+ + + LPHLL GP G GKT++ A+AR +YG
Sbjct: 17 WIEKYRPQTFDDVYGQDDIVERLRSYIERDDLPHLLFAGPAGVGKTTSATAIARAIYGDD 76
Query: 103 YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALR 162
+ LELNASD+RGIDVVR +I++FA + SFG +++ LDEAD++T DAQ ALR
Sbjct: 77 WRGNFLELNASDERGIDVVRDRIKNFARS---SFG-GHDYRVIFLDEADSLTNDAQSALR 132
Query: 163 RVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTE 222
R +E+++ NTRF L CN +KII +QSRC FRF+PL V E+++ + AE ++VTE
Sbjct: 133 RTMEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLGDDAVAEQVRDIAAAEDIEVTE 192
Query: 223 GGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESF 282
GL ALV GDMR+A+N LQ+ + + EEAVY+ T P+DIE++ ++ F
Sbjct: 193 DGLDALVYAAGGDMRRAINSLQAAATTGEVVDEEAVYMITSTARPEDIEEMVRAAIDGEF 252
Query: 283 ADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDK 342
+ K++ + + G+A DI+ ++ V++ + VRLM + + +YR+S G N++
Sbjct: 253 TTARKQLETLIVDTGMAGGDIIDQLHRSVWEFDLGEREAVRLMERIGEADYRISEGANEQ 312
Query: 343 LQ 344
+Q
Sbjct: 313 VQ 314
>gi|313124845|ref|YP_004035109.1| replication factor c small subunit [Halogeometricum borinquense DSM
11551]
gi|448287254|ref|ZP_21478467.1| replication factor C small subunit [Halogeometricum borinquense DSM
11551]
gi|312291210|gb|ADQ65670.1| replication factor C small subunit [Halogeometricum borinquense DSM
11551]
gi|445572462|gb|ELY27000.1| replication factor C small subunit [Halogeometricum borinquense DSM
11551]
Length = 328
Score = 256 bits (654), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 128/302 (42%), Positives = 191/302 (63%), Gaps = 4/302 (1%)
Query: 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 102
W+EKYRPQ+L DV DIV+ + ++ LPHLL GP G GKT++ A+AR +YG
Sbjct: 17 WIEKYRPQTLDDVYGQEDIVERLRSYIEQDDLPHLLFAGPAGVGKTTSATAIARAIYGDD 76
Query: 103 YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALR 162
+ LELNASD+RGIDVVR +I++FA + SFG +++ LDEAD++T DAQ ALR
Sbjct: 77 WRGNFLELNASDERGIDVVRDRIKNFARS---SFG-GFDYRIIFLDEADSLTSDAQSALR 132
Query: 163 RVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTE 222
R +E+++ NTRF L CN +KII +QSRC FRF+PL V E++K + E E +++TE
Sbjct: 133 RTMEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLGDDAVREQVKDIAETEEIELTE 192
Query: 223 GGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESF 282
GL ALV GDMR+A+N LQ+ + + EEAVYL T P+DIE++ ++ F
Sbjct: 193 DGLDALVYAAGGDMRRAINSLQAAATTGEIVDEEAVYLITSTARPEDIEEMVQSAIDGEF 252
Query: 283 ADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDK 342
+ ++ + + G+A DI+ ++ V+ + VRLM + + +YR++ G N++
Sbjct: 253 LTARSKLETLLVDTGMAGGDIIDQLHRSVWDFDLDERTTVRLMERIGEADYRITEGANEQ 312
Query: 343 LQ 344
+Q
Sbjct: 313 VQ 314
>gi|402471008|gb|EJW04947.1| hypothetical protein EDEG_00064 [Edhazardia aedis USNM 41457]
Length = 312
Score = 256 bits (654), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 128/317 (40%), Positives = 200/317 (63%), Gaps = 10/317 (3%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
P EKYRP++L +V + ++V ++ ++ + LPH+L YGPPGTGKT+TI A+A +LYG
Sbjct: 4 PISEKYRPKALTEVLGNSEVVRSLSKIAASGILPHMLFYGPPGTGKTTTIRALAFQLYGL 63
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFAL 161
Y + ILELNASD+RGID VR I+ FA T SF K ++KL++LDEAD+M++DAQ +
Sbjct: 64 NYKSNILELNASDERGIDTVRNTIKSFAQTISF----KNTMKLIILDEADSMSRDAQNCM 119
Query: 162 RRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVT 221
RR+IE ++ N RF LI N +KIIPA+QSRCT+FRFAP++ ++ +R++++ E + +
Sbjct: 120 RRIIEDFSSNVRFCLIANYSSKIIPAIQSRCTKFRFAPVKDSNIAQRIENICIKENIKFS 179
Query: 222 EGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNES 281
+ G+ A+VR CNGDMRK +N L+ A I E +V G K ++ L
Sbjct: 180 KDGIHAIVRYCNGDMRKIMNDLEGISNAYGLIDEFSVNSICGGTSEKIFDEFYKILFTND 239
Query: 282 FADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDV--RVRLMNDLADIEYRLSFGC 339
F +K + + ++ ++ + K SD+ +++++ L+DI+YRLS GC
Sbjct: 240 FEKILLSCQVIKDKYSIDCDALITYISGLIVK----SDILKKMQILKILSDIQYRLSLGC 295
Query: 340 NDKLQLGSIISTFTQAR 356
+ ++Q+ + IS F R
Sbjct: 296 SQEIQMAAFISCFIHLR 312
>gi|55379214|ref|YP_137064.1| replication factor C small subunit [Haloarcula marismortui ATCC
43049]
gi|55231939|gb|AAV47358.1| replication factor C small subunit [Haloarcula marismortui ATCC
43049]
Length = 345
Score = 256 bits (654), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 127/313 (40%), Positives = 194/313 (61%), Gaps = 4/313 (1%)
Query: 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 102
W+EKYRPQ+L DV H +IV + S N L H+L GP GTGKT+ A+AR+LYG
Sbjct: 36 WIEKYRPQTLDDVMGHENIVGRLKSYVSRNDLSHMLFSGPAGTGKTTCATAIARELYGDD 95
Query: 103 YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALR 162
+ LELNASD+RGIDVVR +I++FA T SFG +++ LDEADA+T DAQ ALR
Sbjct: 96 WREHFLELNASDERGIDVVRDRIKNFART---SFG-GVEYRIIFLDEADALTSDAQSALR 151
Query: 163 RVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTE 222
R +E+++ N RF L CN ++II +QSRC FRF+PL V E ++ + E +++TE
Sbjct: 152 RTMEQFSNNVRFILSCNYSSQIIDPIQSRCAVFRFSPLADDAVAEEIRTIAAEEDIELTE 211
Query: 223 GGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESF 282
GL ALV +GDMRKA+N LQ+ ++ + E AVY T P++I + L+ F
Sbjct: 212 DGLDALVYAADGDMRKAINGLQAASVSGDTVDESAVYAITSTARPEEIRTMVQSALDGDF 271
Query: 283 ADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDK 342
S + + +G+A DI+ ++ +++ + D VR++ + + +YR++ G N++
Sbjct: 272 TASRATLDRLLTEEGIAGGDIIDQLHRSIWEFDIDDDAAVRVLERIGETDYRITRGANER 331
Query: 343 LQLGSIISTFTQA 355
+QL +++++ Q
Sbjct: 332 VQLEAMLASLAQG 344
>gi|257387186|ref|YP_003176959.1| replication factor C small subunit [Halomicrobium mukohataei DSM
12286]
gi|257169493|gb|ACV47252.1| Replication factor C [Halomicrobium mukohataei DSM 12286]
Length = 322
Score = 256 bits (654), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 121/311 (38%), Positives = 200/311 (64%), Gaps = 4/311 (1%)
Query: 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 102
W+EKYRPQ+L+DV H IV+ + N L H+L GP GTGKT++ A+AR+LYG
Sbjct: 13 WIEKYRPQTLSDVVGHETIVERLQSYVDRNDLSHMLFAGPAGTGKTTSATAIARELYGDD 72
Query: 103 YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALR 162
+ LELNASD+RGIDVVR +I+ FA T SFG +++ LDEADA+T DAQ ALR
Sbjct: 73 WQEHFLELNASDERGIDVVRDRIKSFART---SFG-GVDYRIIFLDEADALTSDAQSALR 128
Query: 163 RVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTE 222
R +E+++ N RF + CN ++II +QSRC FRF+PL V ++H+ + EG+++T+
Sbjct: 129 RTMEQFSNNVRFIMSCNYSSQIIDPIQSRCAVFRFSPLGDEAVEAEIRHIADEEGIELTD 188
Query: 223 GGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESF 282
G+ ALV GDMRKA+N LQ+ ++ + EEAV+ T P+ I+ + ++ F
Sbjct: 189 DGVDALVYAAGGDMRKAINGLQAASVSGDVVDEEAVFAITSTARPEVIQGMVQDAIDGDF 248
Query: 283 ADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDK 342
+ ++ ++ +G+A DI+ ++ +++ +P + VR+++ + + +YR++ G N++
Sbjct: 249 TAARSQLDDLITDEGIAGGDIIDQLHRSIWEFDVPDEQAVRILDRVGETDYRITEGANER 308
Query: 343 LQLGSIISTFT 353
+QL +++++ +
Sbjct: 309 IQLEAMLASLS 319
>gi|167390711|ref|XP_001739466.1| replication factor C subunit [Entamoeba dispar SAW760]
gi|165896845|gb|EDR24167.1| replication factor C subunit, putative [Entamoeba dispar SAW760]
Length = 539
Score = 256 bits (654), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 123/315 (39%), Positives = 198/315 (62%), Gaps = 8/315 (2%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP + + H I++++ + + N++PH+L YGPPGTGKT+T LA+ ++L G
Sbjct: 4 PWVEKYRPSTTDGIFGHEYILESLKQFINANQIPHMLFYGPPGTGKTTTALAIVKQLCGT 63
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFAL 161
++ ++LELNASD+RGIDVVR QI+ FAST++ K ++LDE+D +TKDAQ AL
Sbjct: 64 KFSALVLELNASDERGIDVVRDQIKSFASTRTL---YTNCTKFIILDESDKLTKDAQNAL 120
Query: 162 RRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVT 221
RR +E+++ N RF ICN+V+ I PA+QSRC + RF PL P +T+ ++++ EG+++
Sbjct: 121 RRTLEQFSANCRFIFICNEVHLITPAIQSRCAKMRFGPLSPNALTKIVENITTKEGMEID 180
Query: 222 EGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNES 281
+ +++ + GD R +N LQ+ M +QIT +Y G P P I+ I LL+
Sbjct: 181 DDAKKSIIEISKGDARSIINTLQALSMTCKQITNSTLYTMVGLPTPAQIDDIISELLSSP 240
Query: 282 FADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPS----DVRVRLMNDLADIEYRLSF 337
+ +SF + + ++ GL+L DI+ V + + K+ S R++ + L+ IE LS
Sbjct: 241 YFESFTVVDNL-IKAGLSLNDIIIRVVPKLIEGKLVSVLDKTARIQCLYQLSLIEQALSI 299
Query: 338 GCNDKLQLGSIISTF 352
G N++ Q + ++ F
Sbjct: 300 GGNERTQTAAFVAAF 314
>gi|448633051|ref|ZP_21674049.1| replication factor C small subunit [Haloarcula vallismortis ATCC
29715]
gi|445752408|gb|EMA03832.1| replication factor C small subunit [Haloarcula vallismortis ATCC
29715]
Length = 325
Score = 256 bits (654), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 125/313 (39%), Positives = 195/313 (62%), Gaps = 4/313 (1%)
Query: 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 102
W+EKYRPQ+L DV H +IV + S N L H+L GP GTGKT+ A+AR+LYG
Sbjct: 16 WIEKYRPQTLDDVMGHENIVGRLKSYVSRNDLSHMLFSGPAGTGKTTCATAIARELYGDD 75
Query: 103 YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALR 162
+ LELNASD+RGIDVVR +I++FA T SFG +++ LDEADA+T DAQ ALR
Sbjct: 76 WREHFLELNASDERGIDVVRDRIKNFART---SFG-GVEYRIIFLDEADALTSDAQSALR 131
Query: 163 RVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTE 222
R +E+++ N RF L CN ++II +QSRC FRF+PL V E ++++ E +++TE
Sbjct: 132 RTMEQFSNNVRFILSCNYSSQIIDPIQSRCAVFRFSPLADDAVAEEIRNIAAQEDIELTE 191
Query: 223 GGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESF 282
GL ALV +GDMRKA+N LQ+ ++ + E AVY T P++I + L+ F
Sbjct: 192 DGLDALVYAADGDMRKAINGLQAASVSGDTVDESAVYAITSTARPEEIRTMVQSALDGDF 251
Query: 283 ADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDK 342
S + + +G+A D++ ++ +++ + + VR++ + + +YR++ G N++
Sbjct: 252 TASRATLDRLLTEEGIAGGDVIDQLHRSIWEFDIDDEAAVRVLERIGETDYRITRGANER 311
Query: 343 LQLGSIISTFTQA 355
+QL +++++ Q
Sbjct: 312 VQLEAMLASLAQG 324
>gi|448732321|ref|ZP_21714602.1| replication factor C small subunit [Halococcus salifodinae DSM
8989]
gi|445804894|gb|EMA55124.1| replication factor C small subunit [Halococcus salifodinae DSM
8989]
Length = 325
Score = 256 bits (653), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 126/300 (42%), Positives = 188/300 (62%), Gaps = 4/300 (1%)
Query: 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 102
W+EKYRP++LA+V H +IV ++ ++N LPHLL GP G GKT++ +A+AR++YG
Sbjct: 15 WIEKYRPETLANVVGHENIVGRLESYVAQNDLPHLLFSGPAGVGKTTSAMAIAREVYGDD 74
Query: 103 YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALR 162
+ LELNASD+RGIDVVR +I+DFA T SFG +++ LDEADA+T DAQ ALR
Sbjct: 75 WRENFLELNASDERGIDVVRDRIKDFART---SFG-GYDYRIIFLDEADALTSDAQSALR 130
Query: 163 RVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTE 222
R +E++ NTRF L CN ++II +QSRC FRF PL V E ++ V E EG++VT+
Sbjct: 131 RTMEQFANNTRFILSCNYSSQIIDPIQSRCAVFRFGPLAEEAVGEYVRQVAEREGIEVTD 190
Query: 223 GGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESF 282
G+ ALV +GDMRKALN LQ+ + +EAVY T P++IE + L+ F
Sbjct: 191 DGVDALVYAADGDMRKALNGLQAAATTEGAVDDEAVYGITATARPEEIEAMVERALDGDF 250
Query: 283 ADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDK 342
+ ++ ++ GL D++ ++ + + VRL+ + + +YR++ G N++
Sbjct: 251 TAARAKLDDLLTDAGLGGGDVIDQLHRSAWSFDLDDAATVRLLERVGETDYRITQGANER 310
>gi|294496335|ref|YP_003542828.1| replication factor C small subunit [Methanohalophilus mahii DSM
5219]
gi|292667334|gb|ADE37183.1| replication factor C small subunit [Methanohalophilus mahii DSM
5219]
Length = 318
Score = 256 bits (653), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 123/316 (38%), Positives = 197/316 (62%), Gaps = 3/316 (0%)
Query: 38 IKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARK 97
+K W+EKYRP L DV D ++ + N LPHLL GPPG GKT+T +++AR+
Sbjct: 1 MKEEIWIEKYRPYRLEDVVGQSDAIERLRSYIKTNNLPHLLFSGPPGVGKTATAVSIARE 60
Query: 98 LYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDA 157
L+G + ELNASD+RGIDVVR +I++FA T A K++ LDEADA+T DA
Sbjct: 61 LFGDDWRENFTELNASDERGIDVVRTKIKNFAKTSPIG---GADFKIIFLDEADALTPDA 117
Query: 158 QFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEG 217
Q ALRR +E+YT N RF L CN +KII +QSRC +RF PL + +R +H+ E EG
Sbjct: 118 QSALRRTMERYTNNCRFILSCNYSSKIIEPIQSRCAVYRFRPLSDDAIGKRCRHIAEKEG 177
Query: 218 LDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWL 277
LD+ + G+ A+ + GDMRKA+N +Q+ M I +++Y T P++I+ +
Sbjct: 178 LDIADDGIEAIKYVAEGDMRKAINAVQAASMFDTSIHADSIYRITATAHPEEIKALLESA 237
Query: 278 LNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSF 337
L +F S K++ ++ + +GL+ D+V +V +F + +P+ V +++ L +I++R++
Sbjct: 238 LGGNFISSRKKLDDLMVSRGLSGEDVVGQVYRSLFDLDIPARKLVSIVDVLGEIDFRITE 297
Query: 338 GCNDKLQLGSIISTFT 353
G ++++QL ++++ +
Sbjct: 298 GADERIQLDALLAHLS 313
>gi|448579007|ref|ZP_21644323.1| replication factor C small subunit [Haloferax larsenii JCM 13917]
gi|445724360|gb|ELZ75993.1| replication factor C small subunit [Haloferax larsenii JCM 13917]
Length = 329
Score = 256 bits (653), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 127/302 (42%), Positives = 190/302 (62%), Gaps = 4/302 (1%)
Query: 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 102
W+EKYRPQ+L DV +IV+ + + LPHLL GP G GKT++ A+AR +YG
Sbjct: 19 WIEKYRPQTLDDVYGQEEIVERLRSYIERDDLPHLLFAGPAGVGKTTSATAIARAIYGDD 78
Query: 103 YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALR 162
+ LELNASD RGIDVVR +I++FA + SFG +++ LDEAD++T DAQ ALR
Sbjct: 79 WRGNFLELNASDQRGIDVVRDRIKNFARS---SFG-GHDYRIIFLDEADSLTNDAQSALR 134
Query: 163 RVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTE 222
R +E+++ NTRF L CN +KII +QSRC FRF+PL + ++ + + AEG+++TE
Sbjct: 135 RTMEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLGDDAIADQTRDIAAAEGIELTE 194
Query: 223 GGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESF 282
GL ALV GDMR+A+N LQ+ + + EEAVY+ T P+DIEQ+ ++ F
Sbjct: 195 DGLDALVYAAGGDMRRAINSLQAAATTGEVVDEEAVYMITSTARPEDIEQMVRDAIDGEF 254
Query: 283 ADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDK 342
+ K++ + + G+A DI+ ++ V+ + VRLM + + +YR+S G N++
Sbjct: 255 TAARKQLETLIVDTGMAGGDIIDQLHRSVWDFDLDERAAVRLMERIGEADYRISEGANEQ 314
Query: 343 LQ 344
+Q
Sbjct: 315 VQ 316
>gi|150403344|ref|YP_001330638.1| replication factor C small subunit [Methanococcus maripaludis C7]
gi|166225156|sp|A6VJ61.1|RFCS_METM7 RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|150034374|gb|ABR66487.1| Replication factor C [Methanococcus maripaludis C7]
Length = 315
Score = 256 bits (653), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 122/309 (39%), Positives = 195/309 (63%), Gaps = 3/309 (0%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRPQ+L++V H +I+ + + +PHLL G PG GKT+ LA+A+ LYG
Sbjct: 4 PWVEKYRPQTLSEVVGHHEIIKRLTNYVEKKSMPHLLFSGSPGVGKTTAALALAKDLYGE 63
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFAL 161
+ LELN+SD+RGIDV+R +++DFA T+ A K++ LDE+DA+T DAQ AL
Sbjct: 64 TWRENFLELNSSDERGIDVIRTKVKDFARTKPIG---DAPFKVIFLDESDALTSDAQNAL 120
Query: 162 RRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVT 221
RR +EKY+ RF L CN +KIIP +QSRC FRF+PL+ + E LK + E E L +
Sbjct: 121 RRTMEKYSDICRFVLSCNYPSKIIPPIQSRCAIFRFSPLKTEDLVENLKEISEKENLTLE 180
Query: 222 EGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNES 281
+GG+ A++ + GDMRKA+N+LQ+ S +TEE VY P +I++++ LN
Sbjct: 181 KGGIDAIIYVSEGDMRKAINVLQTAAAVSDTVTEEIVYKVASKARPDEIKKMTQLALNGK 240
Query: 282 FADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCND 341
F +S +++ + + G++ DI+ ++ V + + +V L+ + + ++R+ G N+
Sbjct: 241 FVESREQLYNLMIDWGMSGEDILIQIFREVPNLDISEKEKVHLVEAIGECDFRIVEGSNE 300
Query: 342 KLQLGSIIS 350
++QL ++++
Sbjct: 301 RIQLSALLA 309
>gi|399575998|ref|ZP_10769755.1| replication factor c small subunit [Halogranum salarium B-1]
gi|399238709|gb|EJN59636.1| replication factor c small subunit [Halogranum salarium B-1]
Length = 323
Score = 256 bits (653), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 127/310 (40%), Positives = 195/310 (62%), Gaps = 4/310 (1%)
Query: 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 102
W+EKYRPQ+L DV DIVD ++ +++ LPHLL GP G GKT+ A+AR++YG
Sbjct: 14 WIEKYRPQTLDDVYGQEDIVDRLESYIAQHDLPHLLFAGPAGIGKTTCATAIAREVYGDD 73
Query: 103 YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALR 162
+ LELNASD+RGIDVVR +I++FA SFG +++ LDEAD++T DAQ ALR
Sbjct: 74 WRGNFLELNASDERGIDVVRDRIKNFARA---SFG-GHDYRIIFLDEADSLTSDAQSALR 129
Query: 163 RVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTE 222
R +E+++ NTRF L CN +KII +QSRC FRFAPL V +++ + + EG+++T+
Sbjct: 130 RTMEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFAPLSDDAVAGQIRKIADREGIEMTD 189
Query: 223 GGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESF 282
GL ALV +GDMR+A+N LQ+ + EEAVYL T P++IE + + F
Sbjct: 190 EGLDALVYAADGDMRRAINSLQAAATTGGVVDEEAVYLITSTARPEEIESMVTAAIEGDF 249
Query: 283 ADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDK 342
A + ++ + G+A DI+ ++ + + VRLM + + +YR++ G N++
Sbjct: 250 AQARSKLDTLLTDTGMAGGDIIDQLHRGAWDFGLDQRETVRLMERIGEADYRITEGANEQ 309
Query: 343 LQLGSIISTF 352
+QL +++++
Sbjct: 310 VQLEAMLASL 319
>gi|448638308|ref|ZP_21676281.1| replication factor C small subunit [Haloarcula sinaiiensis ATCC
33800]
gi|448655209|ref|ZP_21682061.1| replication factor C small subunit [Haloarcula californiae ATCC
33799]
gi|445763557|gb|EMA14744.1| replication factor C small subunit [Haloarcula sinaiiensis ATCC
33800]
gi|445765658|gb|EMA16796.1| replication factor C small subunit [Haloarcula californiae ATCC
33799]
Length = 325
Score = 256 bits (653), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 126/313 (40%), Positives = 194/313 (61%), Gaps = 4/313 (1%)
Query: 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 102
W+EKYRPQ+L DV H +IV + S N L H+L GP GTGKT+ A+AR+LYG
Sbjct: 16 WIEKYRPQTLDDVMGHENIVGRLKSYVSRNDLSHMLFSGPAGTGKTTCATAIARELYGDD 75
Query: 103 YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALR 162
+ LELNASD+RGIDVVR +I++FA T SFG +++ LDEADA+T DAQ ALR
Sbjct: 76 WREHFLELNASDERGIDVVRDRIKNFART---SFG-GVEYRIIFLDEADALTSDAQSALR 131
Query: 163 RVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTE 222
R +E+++ N RF L CN ++II +QSRC FRF+PL V E ++ + E +++TE
Sbjct: 132 RTMEQFSNNVRFILSCNYSSQIIDPIQSRCAVFRFSPLADDAVAEEIRTIAAEEDIELTE 191
Query: 223 GGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESF 282
GL ALV +GDMRKA+N LQ+ ++ + E AVY T P++I + L+ F
Sbjct: 192 DGLDALVYAADGDMRKAINGLQAASVSGDTVDESAVYAITSTARPEEIRTMVQSALDGDF 251
Query: 283 ADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDK 342
S + + +G+A DI+ ++ +++ + + VR++ + + +YR++ G N++
Sbjct: 252 TASRATLDRLLTEEGIAGGDIIDQLHRSIWEFDIDDEAAVRVLERIGETDYRITRGANER 311
Query: 343 LQLGSIISTFTQA 355
+QL +++++ Q
Sbjct: 312 VQLEAMLASLAQG 324
>gi|448543893|ref|ZP_21625354.1| replication factor C small subunit [Haloferax sp. ATCC BAA-646]
gi|448551053|ref|ZP_21629195.1| replication factor C small subunit [Haloferax sp. ATCC BAA-645]
gi|448558572|ref|ZP_21633129.1| replication factor C small subunit [Haloferax sp. ATCC BAA-644]
gi|445706035|gb|ELZ57922.1| replication factor C small subunit [Haloferax sp. ATCC BAA-646]
gi|445710609|gb|ELZ62407.1| replication factor C small subunit [Haloferax sp. ATCC BAA-645]
gi|445712324|gb|ELZ64106.1| replication factor C small subunit [Haloferax sp. ATCC BAA-644]
Length = 327
Score = 255 bits (652), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 128/302 (42%), Positives = 191/302 (63%), Gaps = 4/302 (1%)
Query: 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 102
W+EKYRPQ+ DV DIV+ + + LPHLL GP G GKT++ A+AR +YG
Sbjct: 17 WIEKYRPQTFDDVYGQDDIVERLRSYIERDDLPHLLFAGPAGVGKTTSATAIARAIYGDD 76
Query: 103 YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALR 162
+ LELNASD+RGIDVVR +I++FA + SFG +++ LDEAD++T DAQ ALR
Sbjct: 77 WRGNFLELNASDERGIDVVRDRIKNFARS---SFG-GHDYRVIFLDEADSLTNDAQSALR 132
Query: 163 RVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTE 222
R +E+++ NTRF L CN +KII +QSRC FRF+PL V E+++ + AE ++VTE
Sbjct: 133 RTMEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLGDDAVAEQVRDIAAAEDIEVTE 192
Query: 223 GGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESF 282
GL ALV GDMR+A+N LQ+ + + EEAVY+ T P+DIE++ ++ F
Sbjct: 193 DGLDALVYAAGGDMRRAINSLQAAATTGEVVDEEAVYMITSTARPEDIEEMVRAAIDGEF 252
Query: 283 ADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDK 342
+ K++ + + G+A DI+ ++ V++ + VRLM + + +YR+S G N++
Sbjct: 253 TAARKQLETLIVDTGMAGGDIIDQLHRSVWEFDLDERDAVRLMERIGEADYRISEGANEQ 312
Query: 343 LQ 344
+Q
Sbjct: 313 VQ 314
>gi|340623615|ref|YP_004742068.1| replication factor C small subunit [Methanococcus maripaludis X1]
gi|339903883|gb|AEK19325.1| replication factor C small subunit [Methanococcus maripaludis X1]
Length = 315
Score = 255 bits (652), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 122/309 (39%), Positives = 197/309 (63%), Gaps = 3/309 (0%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP++L++V H +I+ + + +PHLL G PG GKT+ LA+A+ LYG
Sbjct: 4 PWVEKYRPETLSEVVGHHEIIKRLTNYVEKKSMPHLLFSGSPGVGKTTAALALAKDLYGE 63
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFAL 161
+ LELN+SD+RGIDV+R +++DFA T+ A K++ LDE+DA+T DAQ AL
Sbjct: 64 TWRENFLELNSSDERGIDVIRTKVKDFARTKPIG---DAPFKVIFLDESDALTSDAQNAL 120
Query: 162 RRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVT 221
RR +EKY+ RF L CN +KIIP +QSRC FRF+PL+ + E LK + E E L++
Sbjct: 121 RRTMEKYSDICRFILSCNYPSKIIPPIQSRCAIFRFSPLKTEDLVENLKDISEKENLNLE 180
Query: 222 EGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNES 281
+GG+ A++ + GDMRKA+N+LQ+ S +ITEE VY P +I++++ LN
Sbjct: 181 KGGIDAIIYVSEGDMRKAINVLQTAAAVSDEITEEIVYKVASKARPDEIKKMTQLALNGK 240
Query: 282 FADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCND 341
F ++ +++ + + G++ DI+ +V V + + +V L+ + + ++R+ G N+
Sbjct: 241 FVEAREQLYNLMIDWGMSGEDILIQVFREVPNLDISEKEKVHLVEAIGECDFRIVEGSNE 300
Query: 342 KLQLGSIIS 350
++QL ++++
Sbjct: 301 RIQLSALLA 309
>gi|448622422|ref|ZP_21669116.1| replication factor C small subunit [Haloferax denitrificans ATCC
35960]
gi|445754504|gb|EMA05909.1| replication factor C small subunit [Haloferax denitrificans ATCC
35960]
Length = 327
Score = 255 bits (652), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 128/302 (42%), Positives = 191/302 (63%), Gaps = 4/302 (1%)
Query: 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 102
W+EKYRPQ+ DV DIV+ + + LPHLL GP G GKT++ A+AR +YG
Sbjct: 17 WIEKYRPQTFDDVYGQDDIVERLRSYIERDDLPHLLFAGPAGVGKTTSATAIARAIYGDD 76
Query: 103 YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALR 162
+ LELNASD+RGIDVVR +I++FA + SFG +++ LDEAD++T DAQ ALR
Sbjct: 77 WRGNFLELNASDERGIDVVRDRIKNFARS---SFG-GHDYRVIFLDEADSLTNDAQSALR 132
Query: 163 RVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTE 222
R +E+++ NTRF L CN +KII +QSRC FRF+PL V E+++ + AE ++VTE
Sbjct: 133 RTMEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLGDDAVAEQVRDIAAAEDIEVTE 192
Query: 223 GGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESF 282
GL ALV GDMR+A+N LQ+ + + EEAVY+ T P+DIE++ ++ F
Sbjct: 193 DGLDALVYAAGGDMRRAINSLQAAATTGEVVDEEAVYMITSTARPEDIEEMVRNAIDGEF 252
Query: 283 ADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDK 342
+ K++ + + G+A DI+ ++ V++ + VRLM + + +YR+S G N++
Sbjct: 253 TAARKQLETLIVDTGMAGGDIIDQLHRSVWEFDLDEREAVRLMERIGEADYRISEGANEQ 312
Query: 343 LQ 344
+Q
Sbjct: 313 VQ 314
>gi|292654383|ref|YP_003534280.1| replication factor C small subunit [Haloferax volcanii DS2]
gi|448293928|ref|ZP_21484030.1| replication factor C small subunit [Haloferax volcanii DS2]
gi|448597682|ref|ZP_21654607.1| replication factor C small subunit [Haloferax alexandrinus JCM
10717]
gi|291370302|gb|ADE02529.1| replication factor C small subunit [Haloferax volcanii DS2]
gi|445569321|gb|ELY23895.1| replication factor C small subunit [Haloferax volcanii DS2]
gi|445739143|gb|ELZ90652.1| replication factor C small subunit [Haloferax alexandrinus JCM
10717]
Length = 327
Score = 255 bits (651), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 127/302 (42%), Positives = 191/302 (63%), Gaps = 4/302 (1%)
Query: 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 102
W+EKYRPQ+ DV DIV+ + + LPHLL GP G GKT++ A+AR +YG
Sbjct: 17 WIEKYRPQTFDDVYGQDDIVERLRSYIERDDLPHLLFAGPAGVGKTTSATAIARAIYGDD 76
Query: 103 YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALR 162
+ LELNASD+RGIDVVR +I++FA + SFG +++ LDEAD++T DAQ ALR
Sbjct: 77 WRGNFLELNASDERGIDVVRDRIKNFARS---SFG-GHDYRVIFLDEADSLTNDAQSALR 132
Query: 163 RVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTE 222
R +E+++ NTRF L CN +KII +QSRC FRF+PL + E+++ + AE ++VTE
Sbjct: 133 RTMEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLGDDAIAEQVRDIAAAEDIEVTE 192
Query: 223 GGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESF 282
GL ALV GDMR+A+N LQ+ + + EEAVY+ T P+DIE++ ++ F
Sbjct: 193 DGLDALVYAAGGDMRRAINSLQAAATTGEVVDEEAVYMITSTARPEDIEEMVRAAIDGEF 252
Query: 283 ADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDK 342
+ K++ + + G+A DI+ ++ V++ + VRLM + + +YR+S G N++
Sbjct: 253 TAARKQLETLIVDTGMAGGDIIDQLHRSVWEFDLDERDAVRLMERIGEADYRISEGANEQ 312
Query: 343 LQ 344
+Q
Sbjct: 313 VQ 314
>gi|448573535|ref|ZP_21641018.1| replication factor C small subunit [Haloferax lucentense DSM 14919]
gi|445718441|gb|ELZ70131.1| replication factor C small subunit [Haloferax lucentense DSM 14919]
Length = 327
Score = 255 bits (651), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 127/302 (42%), Positives = 191/302 (63%), Gaps = 4/302 (1%)
Query: 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 102
W+EKYRPQ+ DV DIV+ + + LPHLL GP G GKT++ A+AR +YG
Sbjct: 17 WIEKYRPQTFDDVYGQDDIVERLRSYIERDDLPHLLFAGPAGVGKTTSATAIARAIYGDD 76
Query: 103 YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALR 162
+ LELNASD+RGIDVVR +I++FA + SFG +++ LDEAD++T DAQ ALR
Sbjct: 77 WRGNFLELNASDERGIDVVRDRIKNFARS---SFG-GHDYRVIFLDEADSLTNDAQSALR 132
Query: 163 RVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTE 222
R +E+++ NTRF L CN +KII +QSRC FRF+PL + E+++ + AE ++VTE
Sbjct: 133 RTMEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLGDDAIAEQVRDIATAEDIEVTE 192
Query: 223 GGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESF 282
GL ALV GDMR+A+N LQ+ + + EEAVY+ T P+DIE++ ++ F
Sbjct: 193 DGLDALVYAAGGDMRRAINSLQAAATTGEVVDEEAVYMITSTARPEDIEEMVRAAIDGEF 252
Query: 283 ADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDK 342
+ K++ + + G+A DI+ ++ V++ + VRLM + + +YR+S G N++
Sbjct: 253 TAARKQLETLIVDTGMAGGDIIDQLHRSVWEFDLDERDAVRLMERIGEADYRISEGANEQ 312
Query: 343 LQ 344
+Q
Sbjct: 313 VQ 314
>gi|45357990|ref|NP_987547.1| replication factor C small subunit [Methanococcus maripaludis S2]
gi|50400879|sp|Q6M044.1|RFCS_METMP RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|44920747|emb|CAF29983.1| Replication factor C, small subunit [Methanococcus maripaludis S2]
Length = 315
Score = 255 bits (651), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 122/309 (39%), Positives = 197/309 (63%), Gaps = 3/309 (0%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP++L++V H +I+ + + +PHLL G PG GKT+ LA+A+ LYG
Sbjct: 4 PWVEKYRPETLSEVVGHHEIIKRLTNYVEKKSMPHLLFSGSPGVGKTTAALALAKDLYGD 63
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFAL 161
+ LELN+SD+RGIDV+R +++DFA T+ A K++ LDE+DA+T DAQ AL
Sbjct: 64 TWRENFLELNSSDERGIDVIRTKVKDFARTKPIG---DAPFKVIFLDESDALTSDAQNAL 120
Query: 162 RRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVT 221
RR +EKY+ RF L CN +KIIP +QSRC FRF+PL+ + E LK + E E L++
Sbjct: 121 RRTMEKYSDICRFILSCNYPSKIIPPIQSRCAIFRFSPLKTEDLVENLKDISEKENLNLE 180
Query: 222 EGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNES 281
+GG+ A++ + GDMRKA+N+LQ+ S +ITEE VY P +I++++ LN
Sbjct: 181 KGGIDAIIYVSEGDMRKAINVLQTAAAVSDEITEEIVYKVASKARPDEIKKMTQLALNGK 240
Query: 282 FADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCND 341
F ++ +++ + + G++ DI+ +V V + + +V L+ + + ++R+ G N+
Sbjct: 241 FVEAREQLYNLMIDWGMSGEDILIQVFREVPNLDISEKEKVHLVEAIGECDFRIVEGSNE 300
Query: 342 KLQLGSIIS 350
++QL ++++
Sbjct: 301 RIQLSALLA 309
>gi|344213231|ref|YP_004797551.1| replication factor C small subunit [Haloarcula hispanica ATCC
33960]
gi|343784586|gb|AEM58563.1| replication factor C small subunit [Haloarcula hispanica ATCC
33960]
Length = 407
Score = 255 bits (651), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 126/313 (40%), Positives = 195/313 (62%), Gaps = 4/313 (1%)
Query: 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 102
W+EKYRPQ+L DV H +IV + S N L H+L GP GTGKT+ A+AR+LYG
Sbjct: 98 WIEKYRPQTLDDVMGHENIVGRLKSYVSRNDLSHMLFSGPAGTGKTTCATAIARELYGED 157
Query: 103 YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALR 162
+ LELNASD+RGIDVVR +I++FA T SFG +++ LDEADA+T DAQ ALR
Sbjct: 158 WREHFLELNASDERGIDVVRDRIKNFART---SFG-GVEYRIIFLDEADALTSDAQSALR 213
Query: 163 RVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTE 222
R +E+++ N RF L CN ++II +QSRC FRF+PL V E ++++ E +++TE
Sbjct: 214 RTMEQFSNNVRFILSCNYSSQIIDPIQSRCAVFRFSPLADDAVAEEIRNIAAEEDIELTE 273
Query: 223 GGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESF 282
GL ALV +GDMRKA+N LQ+ ++ + E AVY T P++I + L+ F
Sbjct: 274 DGLDALVYAADGDMRKAINGLQAASVSGDTVDESAVYAITSTARPEEIRTMVQSALDGDF 333
Query: 283 ADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDK 342
S + + +G+A DI+ ++ +++ + + VR++ + + +YR++ G N++
Sbjct: 334 TASRATLDRLLTEEGIAGGDIIDQLHRSIWEFDIDDEAAVRVLERIGETDYRITRGANER 393
Query: 343 LQLGSIISTFTQA 355
+QL +++++ Q
Sbjct: 394 VQLEAMLASLAQG 406
>gi|257052996|ref|YP_003130829.1| replication factor C small subunit [Halorhabdus utahensis DSM
12940]
gi|256691759|gb|ACV12096.1| Replication factor C [Halorhabdus utahensis DSM 12940]
Length = 326
Score = 255 bits (651), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 124/302 (41%), Positives = 190/302 (62%), Gaps = 4/302 (1%)
Query: 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 102
W+EKYRPQ+L D+A H IV+ + S N L H+L GP G GKT+ A+AR+LYG
Sbjct: 15 WIEKYRPQTLEDIAGHEAIVERLGSYVSRNDLSHMLFAGPAGVGKTTAATAIARELYGED 74
Query: 103 YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALR 162
+ LELNASD+RGIDVVR +++ FA T SFG +++ LDEADA+T DAQ ALR
Sbjct: 75 WEENFLELNASDERGIDVVRDRVKSFART---SFG-GYDYRIIFLDEADALTADAQSALR 130
Query: 163 RVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTE 222
R +E+++ N RF L CN ++II +QSRC FRF+PL V +++ + + E +DVTE
Sbjct: 131 RTMEQFSNNVRFILSCNYSSQIIDPIQSRCAVFRFSPLADEAVEAQIRQIAQEEVIDVTE 190
Query: 223 GGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESF 282
G+ ALV + GDMRKA+N LQ+ M+ + EEAV+ T P+DI ++ L+ F
Sbjct: 191 DGIEALVYVAGGDMRKAINGLQAASMSGDTVNEEAVFEITSTARPEDIREMVDLALDGDF 250
Query: 283 ADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDK 342
+ R+ + +G+A DI+ ++ V++ + VR+++ + + +YR++ G +++
Sbjct: 251 TAARSRLDTLLTEEGIAGGDIIDQLHRTVWEFDLSDAAAVRVLDRVGEADYRITEGASER 310
Query: 343 LQ 344
+Q
Sbjct: 311 IQ 312
>gi|448683820|ref|ZP_21692440.1| replication factor C small subunit [Haloarcula japonica DSM 6131]
gi|445783393|gb|EMA34222.1| replication factor C small subunit [Haloarcula japonica DSM 6131]
Length = 325
Score = 255 bits (651), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 125/313 (39%), Positives = 195/313 (62%), Gaps = 4/313 (1%)
Query: 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 102
W+EKYRPQ+L DV H +IV + S N L H+L GP GTGKT+ A+AR+LYG
Sbjct: 16 WIEKYRPQTLDDVMGHENIVGRLKSYVSRNDLSHMLFSGPAGTGKTTCATAIARELYGDD 75
Query: 103 YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALR 162
+ LELNASD+RGIDVVR +I++FA T SFG +++ LDEADA+T DAQ ALR
Sbjct: 76 WREHFLELNASDERGIDVVRDRIKNFART---SFG-GVEYRIIFLDEADALTSDAQSALR 131
Query: 163 RVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTE 222
R +E+++ N RF L CN ++II +QSRC FRF+PL V + ++++ E +++TE
Sbjct: 132 RTMEQFSNNVRFILSCNYSSQIIDPIQSRCAVFRFSPLADDAVADEIRNIAAEEDIELTE 191
Query: 223 GGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESF 282
GL ALV +GDMRKA+N LQ+ ++ + E AVY T P++I + L+ F
Sbjct: 192 DGLDALVYAADGDMRKAINGLQAASVSGDTVDESAVYAITSTARPEEIRTMVQSALDGDF 251
Query: 283 ADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDK 342
S + + +G+A DI+ ++ +++ + + VR++ + + +YR++ G N++
Sbjct: 252 TASRATLDRLLTEEGIAGGDIIDQLHRSIWEFDIDDEAAVRVLERIGETDYRITRGANER 311
Query: 343 LQLGSIISTFTQA 355
+QL +++++ Q
Sbjct: 312 VQLEAMLASLAQG 324
>gi|336476385|ref|YP_004615526.1| replication factor C [Methanosalsum zhilinae DSM 4017]
gi|335929766|gb|AEH60307.1| Replication factor C [Methanosalsum zhilinae DSM 4017]
Length = 317
Score = 255 bits (651), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 125/320 (39%), Positives = 199/320 (62%), Gaps = 3/320 (0%)
Query: 38 IKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARK 97
+K W+EKYRP L DV ++ ++ + LPHLL GPPG GKT+T +A+A +
Sbjct: 1 MKEEIWIEKYRPMKLDDVVGQKEAIERLKSYVKTRNLPHLLFSGPPGVGKTATAVAIAHE 60
Query: 98 LYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDA 157
L+G ++ ELNASD+RGIDVVR +I++FA T A K++ LDEADA+T DA
Sbjct: 61 LFGDSWNENFTELNASDERGIDVVRTKIKNFAKTSPIG---GADFKIIFLDEADALTSDA 117
Query: 158 QFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEG 217
Q ALRR +E+YT N RF L CN +KII +QSRC +RF PL V ER+++V +AEG
Sbjct: 118 QSALRRTMERYTGNCRFILSCNYSSKIIEPIQSRCAVYRFRPLADEPVKERIRYVADAEG 177
Query: 218 LDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWL 277
+ + + + A+ + GDMRKALN LQ+ M + I +E +Y T P +I+ +
Sbjct: 178 IKLADDAIDAIGYVAQGDMRKALNALQAAAMFDETIQKEMIYKITATAHPDEIKTLINIA 237
Query: 278 LNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSF 337
L+ +F+ + +++ + + +GL+ D+V ++ +F + +P V L++ + +I++R++
Sbjct: 238 LDGNFSAAREKLDTLMLEQGLSGEDVVGQIYRAMFGLDIPDKKLVELIDVIGEIDFRITE 297
Query: 338 GCNDKLQLGSIISTFTQARS 357
G N+K+QL ++++ F A S
Sbjct: 298 GANEKIQLQALLAHFVIANS 317
>gi|448364052|ref|ZP_21552646.1| replication factor C small subunit [Natrialba asiatica DSM 12278]
gi|445644940|gb|ELY97947.1| replication factor C small subunit [Natrialba asiatica DSM 12278]
Length = 331
Score = 254 bits (648), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 123/323 (38%), Positives = 199/323 (61%), Gaps = 6/323 (1%)
Query: 30 IVSGTPPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTS 89
+ TP K W+EKYRP+ L ++ H +IV ++R ++ LPHL+ GP GTGKT+
Sbjct: 10 VAESTPG--KTEVWIEKYRPERLDEIKGHENIVPRLERYVEQDDLPHLMFAGPAGTGKTT 67
Query: 90 TILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDE 149
A+AR++YG + LELNASD RGIDVVR +I+DFA SFG +++ LDE
Sbjct: 68 AAQAIAREVYGDDWRENFLELNASDQRGIDVVRDRIKDFARA---SFG-GYDHRIIFLDE 123
Query: 150 ADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERL 209
ADA+T DAQ ALRR +E+++ NTRF L CN ++II +QSRC FRF L + ++
Sbjct: 124 ADALTSDAQSALRRTMEQFSNNTRFILSCNYSSQIIDPIQSRCAVFRFTELTEDAIEAQV 183
Query: 210 KHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKD 269
+ + E EG++VT+ G+ ALV +GDMRKA+N LQ+ + + + EE V+ T P++
Sbjct: 184 REIAETEGIEVTDDGVDALVYAADGDMRKAINALQAAAVMGETVDEETVFAITATARPEE 243
Query: 270 IEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLA 329
+E++ + F + + ++ +GLA D++ ++ + +P VRL+ L
Sbjct: 244 VEEMVDHAIAGDFTAARAALEDLLTDRGLAGGDVIDQLHRSAWTFDIPEQATVRLLERLG 303
Query: 330 DIEYRLSFGCNDKLQLGSIISTF 352
++++R++ G N++LQL +++++
Sbjct: 304 EVDFRITEGANERLQLEAMLASL 326
>gi|448589356|ref|ZP_21649515.1| replication factor C small subunit [Haloferax elongans ATCC
BAA-1513]
gi|445735784|gb|ELZ87332.1| replication factor C small subunit [Haloferax elongans ATCC
BAA-1513]
Length = 329
Score = 254 bits (648), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 126/302 (41%), Positives = 190/302 (62%), Gaps = 4/302 (1%)
Query: 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 102
W+EKYRPQ+L DV +IV+ + + LPHLL GP G GKT++ A+AR +YG
Sbjct: 19 WIEKYRPQTLDDVYGQEEIVERLRSYIERDDLPHLLFAGPAGVGKTTSATAIARAIYGDD 78
Query: 103 YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALR 162
+ LELNASD RGIDVVR +I++FA + SFG +++ LDEAD++T DAQ ALR
Sbjct: 79 WRGNFLELNASDQRGIDVVRDRIKNFARS---SFG-GHDYRIIFLDEADSLTNDAQSALR 134
Query: 163 RVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTE 222
R +E+++ NTRF L CN +KII +QSRC FRF+PL + ++ + + +AEG+++TE
Sbjct: 135 RTMEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLGDDAIADQTRDIAKAEGIELTE 194
Query: 223 GGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESF 282
GL ALV GDMR+A+N LQ+ + + EEAVY+ T P+DIE + ++ F
Sbjct: 195 DGLDALVYAAGGDMRRAINSLQAAATTGEVVDEEAVYMITSTARPEDIETMVRDAIDGEF 254
Query: 283 ADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDK 342
+ K++ + + G+A DI+ ++ V+ + VRLM + + +YR+S G N++
Sbjct: 255 TAARKQLETLIVDTGMAGGDIIDQLHRSVWDFDLDERAAVRLMERIGEADYRISEGANEQ 314
Query: 343 LQ 344
+Q
Sbjct: 315 VQ 316
>gi|433431944|ref|ZP_20407710.1| replication factor C small subunit [Haloferax sp. BAB2207]
gi|432193760|gb|ELK50452.1| replication factor C small subunit [Haloferax sp. BAB2207]
Length = 327
Score = 254 bits (648), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 126/302 (41%), Positives = 191/302 (63%), Gaps = 4/302 (1%)
Query: 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 102
W+EKYRPQ+ DV DIV+ + + LPHLL GP G GKT++ A+AR +YG
Sbjct: 17 WIEKYRPQTFDDVYGQDDIVERLRSYIERDDLPHLLFAGPAGVGKTTSATAIARAIYGDD 76
Query: 103 YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALR 162
+ LELNASD+RGIDVVR +I++FA + SFG +++ LDEAD++T DAQ ALR
Sbjct: 77 WRGNFLELNASDERGIDVVRDRIKNFARS---SFG-GHDYRVIFLDEADSLTNDAQSALR 132
Query: 163 RVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTE 222
R +E+++ NTRF L CN +KII +QSRC FRF+PL + E+++ + AE ++VTE
Sbjct: 133 RTMEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLGDDAIAEQVRDIAAAEDIEVTE 192
Query: 223 GGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESF 282
GL ALV GDMR+A+N LQ+ + + E+AVY+ T P+DIE++ ++ F
Sbjct: 193 DGLDALVYAAGGDMRRAINSLQAAATTGEVVDEDAVYMITSTARPEDIEEMVRAAIDGEF 252
Query: 283 ADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDK 342
+ K++ + + G+A DI+ ++ V++ + VRLM + + +YR+S G N++
Sbjct: 253 TAARKQLETLIVDTGMAGGDIIDQLHRSVWEFDLDERDAVRLMERIGEADYRISEGANEQ 312
Query: 343 LQ 344
+Q
Sbjct: 313 VQ 314
>gi|15920690|ref|NP_376359.1| replication factor C small subunit [Sulfolobus tokodaii str. 7]
gi|42559516|sp|Q975D3.1|RFCS_SULTO RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|342306208|dbj|BAK54297.1| replication factor C small subunit [Sulfolobus tokodaii str. 7]
Length = 327
Score = 253 bits (647), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 129/312 (41%), Positives = 198/312 (63%), Gaps = 6/312 (1%)
Query: 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 102
W EKYRP+SL D+ +DIV+ + R + +PHLL GPPGTGKT+ LA+ LYG
Sbjct: 9 WAEKYRPRSLDDIVNQKDIVERLKRFVKDKNMPHLLFSGPPGTGKTTAALALVHDLYGDN 68
Query: 103 YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALR 162
Y LELNASD+RGIDV+R ++++FA T + G K+VLLDEAD MT DAQ ALR
Sbjct: 69 YRQYFLELNASDERGIDVIRNKVKEFARTVA---GGNVPFKVVLLDEADNMTADAQQALR 125
Query: 163 RVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTE 222
R +E YT+ TRF L CN ++KII +QSR FRF PL+ V RL ++ + E ++ +
Sbjct: 126 RTMELYTETTRFILACNYLSKIIEPIQSRTALFRFYPLKKEDVVARLAYIAKNEKVEYDQ 185
Query: 223 GGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESF 282
L + + GDMRKA+NILQ++ + ++T EAVY G PK+I ++ L +F
Sbjct: 186 KALETIYDITQGDMRKAINILQASSVYG-KVTVEAVYKVLGLAQPKEIREMIMLALQGNF 244
Query: 283 ADSFKRISEMKMRKGLALVDIVREVTMFVF--KIKMPSDVRVRLMNDLADIEYRLSFGCN 340
+ +++ E+ + GL+ DI++++ V +I +P D++V L++ + ++EYR+ G +
Sbjct: 245 LKAREKLRELLVNYGLSGEDIIKQIHREVTGNEINIPDDLKVLLVDYIGEVEYRIMEGAD 304
Query: 341 DKLQLGSIISTF 352
D++QL ++++
Sbjct: 305 DEIQLNALLAKL 316
>gi|448304145|ref|ZP_21494089.1| replication factor C small subunit [Natronorubrum sulfidifaciens
JCM 14089]
gi|445591898|gb|ELY46094.1| replication factor C small subunit [Natronorubrum sulfidifaciens
JCM 14089]
Length = 329
Score = 253 bits (647), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 122/321 (38%), Positives = 198/321 (61%), Gaps = 4/321 (1%)
Query: 32 SGTPPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTI 91
+ P K W+EKYRP+ L ++ H +IV + R ++ LPHL+ GP GTGKT+
Sbjct: 8 AAEPTPGKTEVWIEKYRPERLDEIKGHENIVPRLQRYIEQDDLPHLMFAGPAGTGKTTAA 67
Query: 92 LAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEAD 151
++AR++Y + LELNASD RGIDVVR +I+DFA + SFG +++ LDEAD
Sbjct: 68 QSIAREVYDDDWRENFLELNASDQRGIDVVRDRIKDFARS---SFG-GYDHRIIFLDEAD 123
Query: 152 AMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKH 211
A+T DAQ ALRR +E+++ NTRF L CN ++II +QSRC FRF L + +++
Sbjct: 124 ALTSDAQSALRRTMEQFSNNTRFILSCNYSSQIIDPIQSRCAVFRFTELSEDAIEAQIRE 183
Query: 212 VIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIE 271
+ E EG+ VT+ G+ ALV +GDMRKA+N LQ+ + + + EE V+ T P+++E
Sbjct: 184 IAEIEGITVTDDGIDALVYAADGDMRKAINALQAAAVMGETVDEETVFAITSTARPEEVE 243
Query: 272 QISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADI 331
+ ++ F + + ++ M +GLA D++ ++ ++ +P VRL+ L ++
Sbjct: 244 AMVDHAIDGDFTAARAALEDLLMERGLAGGDVIDQLHRSAWEFDIPEQATVRLLERLGEV 303
Query: 332 EYRLSFGCNDKLQLGSIISTF 352
+YR++ G N++LQL +++++
Sbjct: 304 DYRITEGANERLQLEAMLASL 324
>gi|330507468|ref|YP_004383896.1| replication factor C small subunit [Methanosaeta concilii GP6]
gi|328928276|gb|AEB68078.1| replication factor C small subunit [Methanosaeta concilii GP6]
Length = 323
Score = 253 bits (646), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 120/316 (37%), Positives = 198/316 (62%), Gaps = 4/316 (1%)
Query: 38 IKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARK 97
IK W+EKYRP+ L D+ +IV + LPHLL GPPG GKT+ +++ ++
Sbjct: 3 IKEEIWIEKYRPERLDDIVGQDEIVRRLKSYVKTRNLPHLLFSGPPGVGKTAASISIVKE 62
Query: 98 LYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDA 157
++G + N +ELNASD+RGID++R +++DFA +A K++ LDEADA+T DA
Sbjct: 63 IFGETWRNNFIELNASDERGIDIIRHKVKDFARMAPLG---EADFKVIFLDEADALTNDA 119
Query: 158 QFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEG 217
Q ALRR +E+Y+ TRF L CN +KII +QSRC +RF PL P VT+R+K + EG
Sbjct: 120 QSALRRTMERYSATTRFILSCNYSSKIIEPIQSRCAVYRFKPLSPEAVTKRIKFIASEEG 179
Query: 218 LDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWL 277
L V++GGL+A+ + GDMRKA+N LQ+ + ++ EE +Y T P++I+
Sbjct: 180 LRVSDGGLSAIEYVAGGDMRKAINALQAAALLGDEVDEETIYQITSTAKPEEIKSFIKTA 239
Query: 278 LNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDV-RVRLMNDLADIEYRLS 336
++ F + + ++ + KGL+ D+V ++ + + +D RV+L++ + +I++R++
Sbjct: 240 ISGDFVGARAILDDLLLSKGLSGQDVVIQIHRAMLDLDDIADRDRVKLIDRIGEIDFRMT 299
Query: 337 FGCNDKLQLGSIISTF 352
G N+++QL ++++ F
Sbjct: 300 EGANERIQLEALLAYF 315
>gi|433589372|ref|YP_007278868.1| DNA polymerase III, gamma/tau subunit [Natrinema pellirubrum DSM
15624]
gi|448335506|ref|ZP_21524650.1| replication factor C small subunit [Natrinema pellirubrum DSM
15624]
gi|433304152|gb|AGB29964.1| DNA polymerase III, gamma/tau subunit [Natrinema pellirubrum DSM
15624]
gi|445616896|gb|ELY70508.1| replication factor C small subunit [Natrinema pellirubrum DSM
15624]
Length = 330
Score = 253 bits (646), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 125/321 (38%), Positives = 198/321 (61%), Gaps = 4/321 (1%)
Query: 32 SGTPPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTI 91
+ P K W+EKYRP+ LAD+ H DIV ++ ++ LPHLL GP GTGKT+
Sbjct: 8 AAEPTPGKTEVWIEKYRPELLADIKGHTDIVPRLENYVEQDDLPHLLFAGPAGTGKTTAA 67
Query: 92 LAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEAD 151
A+AR++Y + LELNASD RGIDVVR +I+DFA + SFG S +++ LDEAD
Sbjct: 68 QAIAREVYDDDWRENFLELNASDQRGIDVVRDRIKDFARS---SFG-GYSHRIIFLDEAD 123
Query: 152 AMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKH 211
A+T DAQ ALRR +E+++ NTRF L CN ++II +QSRC FRF L + +++
Sbjct: 124 ALTSDAQSALRRTMEQFSNNTRFILSCNYSSQIIDPIQSRCAVFRFTELTENAIEAQVRE 183
Query: 212 VIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIE 271
+ E +DVT+ G+ ALV +GDMRKA+N LQ+ + + + EE V+ T P+++E
Sbjct: 184 IAANEEIDVTDDGVDALVFAADGDMRKAINGLQAAAVMGETVDEETVFAITATARPEEVE 243
Query: 272 QISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADI 331
+ ++ F + + ++ +GLA D++ ++ ++ +P VRL+ L ++
Sbjct: 244 AMVEHAIDGDFTAARAALEDLLTERGLAGGDVIDQLHRSAWEFDIPERATVRLLERLGEV 303
Query: 332 EYRLSFGCNDKLQLGSIISTF 352
+YR++ G N++LQL +++++
Sbjct: 304 DYRITEGANERLQLEAMLASL 324
>gi|134046237|ref|YP_001097722.1| replication factor C small subunit [Methanococcus maripaludis C5]
gi|166225155|sp|A4FZ74.1|RFCS_METM5 RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|132663862|gb|ABO35508.1| replication factor C small subunit [Methanococcus maripaludis C5]
Length = 315
Score = 253 bits (645), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 121/309 (39%), Positives = 195/309 (63%), Gaps = 3/309 (0%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP++L +V H +I+ + + +PHLL G PG GKT+ LA+A+ LYG
Sbjct: 4 PWVEKYRPETLPEVVGHHEIIKRLTNYVEKKSMPHLLFSGSPGVGKTTAALALAKDLYGE 63
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFAL 161
+ LELN+SD+RGIDV+R +++DFA T+ A K++ LDE+DA+T DAQ AL
Sbjct: 64 TWRENFLELNSSDERGIDVIRTKVKDFARTKPIG---DAPFKVIFLDESDALTSDAQNAL 120
Query: 162 RRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVT 221
RR +EKY+ RF L CN +KIIP +QSRC FRF+PL+ + E LK + E E L +
Sbjct: 121 RRTMEKYSDICRFILSCNYPSKIIPPIQSRCAIFRFSPLKTEDLVENLKDISEKETLTLE 180
Query: 222 EGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNES 281
+GG+ A++ + GDMRKA+N+LQ+ S +TEE VY P +I+++++ LN
Sbjct: 181 KGGIDAIIYVSEGDMRKAINVLQTAAAVSDTVTEEIVYKVASKARPDEIKKMTHLALNGK 240
Query: 282 FADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCND 341
F ++ +++ + + G++ DI+ +V V + + +V L+ + + ++R+ G N+
Sbjct: 241 FVEAKEQLYNLMIDWGMSGEDILIQVFREVPNLDISEKEKVHLVEAIGECDFRIVEGSNE 300
Query: 342 KLQLGSIIS 350
++QL ++++
Sbjct: 301 RIQLSALLA 309
>gi|347524285|ref|YP_004781855.1| Replication factor C [Pyrolobus fumarii 1A]
gi|343461167|gb|AEM39603.1| Replication factor C [Pyrolobus fumarii 1A]
Length = 327
Score = 251 bits (642), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 130/310 (41%), Positives = 197/310 (63%), Gaps = 6/310 (1%)
Query: 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 102
W EKYRP++L ++ +IV + + E +PHLL GPPGTGKT+ A+A L+G
Sbjct: 10 WAEKYRPKTLDEIVNQEEIVRRLKKFVEEKNMPHLLFVGPPGTGKTTAAHALAHDLFGEN 69
Query: 103 YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALR 162
Y +LELNASD+RGI+ +R ++++FA +++ G+ K+VLLDEAD MT DAQ ALR
Sbjct: 70 YRQYMLELNASDERGIETIRTKVKEFARSRTPP-GI--PFKIVLLDEADNMTADAQQALR 126
Query: 163 RVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTE 222
R++E YT +TRF LI N +KII +QSRC FRF PL+ V RLK + E EG E
Sbjct: 127 RLMEMYTASTRFILIANYPSKIIEPIQSRCAIFRFTPLKKEDVVARLKWICEQEGCQYDE 186
Query: 223 GGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESF 282
L + + GDMR+A+NILQ+ A ++T EAVY G PK+I +I L+ F
Sbjct: 187 EALETIYEISEGDMRRAINILQAA-AALGKVTVEAVYKVVGLAHPKEIREIIKLALDGRF 245
Query: 283 ADSFKRISEMKMRKGLALVDIVREVTMFVF--KIKMPSDVRVRLMNDLADIEYRLSFGCN 340
D+ K++ E+ + GL+ D+++++ VF ++K+P +VRV + + +I++RL G +
Sbjct: 246 TDARKKLRELMINYGLSGTDVIKQIHKEVFGPELKLPDEVRVLIADYAGEIQFRLVEGAD 305
Query: 341 DKLQLGSIIS 350
D++QL + ++
Sbjct: 306 DEIQLNAFLA 315
>gi|146304798|ref|YP_001192114.1| replication factor C small subunit [Metallosphaera sedula DSM 5348]
gi|145703048|gb|ABP96190.1| replication factor C small subunit [Metallosphaera sedula DSM 5348]
Length = 326
Score = 251 bits (642), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 129/310 (41%), Positives = 195/310 (62%), Gaps = 6/310 (1%)
Query: 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 102
W EKYRP+SL D+ RDIV+ + E +PHLL GPPGTGKT++ LA+ LYG
Sbjct: 7 WAEKYRPRSLDDIVNQRDIVERLKHFVKEKNMPHLLFAGPPGTGKTTSALALVHDLYGEN 66
Query: 103 YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALR 162
Y +LELNASD+RGIDV+R ++++FA T + K VLLDEAD MT DAQ ALR
Sbjct: 67 YEQYLLELNASDERGIDVIRNKVKEFARTVTPG---SVPFKTVLLDEADNMTADAQQALR 123
Query: 163 RVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTE 222
R +E YT+ TRF L CN ++KII +QSR FRF PL+ V RL+ +++ EG+
Sbjct: 124 RTMELYTETTRFILACNYLSKIIDPIQSRTALFRFYPLKKEDVISRLEFIMKQEGVQYDP 183
Query: 223 GGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESF 282
L + + NGDMRKA+N+LQ+ A ++T+EAV+ G PK++ + L F
Sbjct: 184 KALDVIYDVTNGDMRKAINVLQAAS-AYGKVTQEAVFKVLGLAQPKEVRDMVKLALQGRF 242
Query: 283 ADSFKRISEMKMRKGLALVDIVREVTMFVF--KIKMPSDVRVRLMNDLADIEYRLSFGCN 340
D+ ++ + + GL+ DIV++V +F + ++P ++RV L + + ++E+R+ G +
Sbjct: 243 MDARSKLLSLIINYGLSGEDIVKQVHRDIFSNEYQIPEELRVLLTDYIGEVEFRIIEGAD 302
Query: 341 DKLQLGSIIS 350
D++QL ++++
Sbjct: 303 DEIQLSAMLA 312
>gi|443925216|gb|ELU44103.1| DNA replication factor [Rhizoctonia solani AG-1 IA]
Length = 302
Score = 251 bits (642), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 136/312 (43%), Positives = 184/312 (58%), Gaps = 27/312 (8%)
Query: 22 PKDNGKNVIVSGTPPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYG 81
PKD GK V PWVEKYRP +L+DV +H+DI TI+R +NRLPHLL YG
Sbjct: 12 PKDKGKQKEVPEENFKDDTLPWVEKYRPVTLSDVVSHQDITSTIERFIEKNRLPHLLFYG 71
Query: 82 PPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKAS 141
PPGTGKTSTI+AVAR++YG Y ILELNASDDRGI+VVR+QI+ FA T++
Sbjct: 72 PPGTGKTSTIVAVARRIYGNDYKKQILELNASDDRGIEVVREQIKQFAETRTL---FNKG 128
Query: 142 VKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLE 201
KL++LDEAD MT+ AQ ALRR E+ + +V + C F F
Sbjct: 129 FKLIILDEADMMTQAAQAALRRGREE----GEYGYRERKVGLV-------CLAFAFRSWM 177
Query: 202 PVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLC 261
V ++T G AL++L GDMR+ALN+LQ++H A +I E +Y C
Sbjct: 178 EYRV-------------NITPEGKQALLKLSKGDMRRALNVLQASHAAYDRIDESEIYTC 224
Query: 262 TGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVR 321
TGNP P DIE + ++++ F S++ + +MK +GLAL D++ + ++ P R
Sbjct: 225 TGNPHPSDIEHLVNSMMSDDFGTSYQLVMKMKTERGLALQDLLSGAYEYFEMLEFPPAAR 284
Query: 322 VRLMNDLADIEY 333
V L++ LA IEY
Sbjct: 285 VHLLDKLATIEY 296
>gi|374633940|ref|ZP_09706305.1| DNA polymerase III, gamma/tau subunit [Metallosphaera
yellowstonensis MK1]
gi|373523728|gb|EHP68648.1| DNA polymerase III, gamma/tau subunit [Metallosphaera
yellowstonensis MK1]
Length = 326
Score = 251 bits (640), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 131/313 (41%), Positives = 196/313 (62%), Gaps = 12/313 (3%)
Query: 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 102
W EKYRP+SL D+ +DIV+ + + E +PHLL GPPGTGKT++ LA+ LYG
Sbjct: 7 WAEKYRPKSLDDIVNQKDIVERLKKFVKEKNMPHLLFAGPPGTGKTTSALALVYDLYGEN 66
Query: 103 YHNMILELNASDDRGIDVVRQQIQDFAST---QSFSFGVKASVKLVLLDEADAMTKDAQF 159
Y LELNASD+RGIDV+R +++DFA T Q F K VLLDEAD MT DAQ
Sbjct: 67 YRQYFLELNASDERGIDVIRNKVKDFARTVTPQDVPF------KTVLLDEADNMTADAQQ 120
Query: 160 ALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLD 219
ALRR +E YT+ TRF L CN ++KII +QSR FRF PL+ V RL+ + + E ++
Sbjct: 121 ALRRTMELYTETTRFILACNYLSKIIDPIQSRTALFRFYPLKKEDVISRLEFIAKNEKVE 180
Query: 220 VTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLN 279
L + + +GDMRKA+NILQ++ A ++T EAVY G PK+I ++ L
Sbjct: 181 YDPKALDTIYEITSGDMRKAINILQASS-AYGKVTTEAVYKVLGMAQPKEIREMVKSALQ 239
Query: 280 ESFADSFKRISEMKMRKGLALVDIVREVTMFVF--KIKMPSDVRVRLMNDLADIEYRLSF 337
F ++ ++ + + GL+ DIV++V +F + ++P ++RV + + + ++EYR+
Sbjct: 240 GRFTEARSKLLSLMINYGLSGEDIVKQVHRDIFSNEFQIPEELRVIMADYVGEVEYRIIE 299
Query: 338 GCNDKLQLGSIIS 350
G +D++QL ++++
Sbjct: 300 GADDEIQLSAMLA 312
>gi|448726685|ref|ZP_21709077.1| replication factor C small subunit [Halococcus morrhuae DSM 1307]
gi|445793731|gb|EMA44302.1| replication factor C small subunit [Halococcus morrhuae DSM 1307]
Length = 326
Score = 251 bits (640), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 121/304 (39%), Positives = 188/304 (61%), Gaps = 4/304 (1%)
Query: 39 KASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKL 98
+ W+EKYRP +LA+VA DI + + +++ LPHLL GP G GKT++ +A+AR++
Sbjct: 10 RGEIWIEKYRPSALAEVAGQDDITERLRSYVAQDDLPHLLFSGPAGVGKTTSAMAIAREI 69
Query: 99 YGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQ 158
YG + + LELNASD+RGIDVVR +I++FA T SFG +++ LDEADA+T DAQ
Sbjct: 70 YGDDWRDNFLELNASDERGIDVVRDRIKNFART---SFG-GYDYRVIFLDEADALTSDAQ 125
Query: 159 FALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGL 218
ALRR +E++ NTRF L CN N+II +QSRC FRF PL V E ++ + EG+
Sbjct: 126 SALRRTMEQFANNTRFILSCNYSNQIIDPIQSRCAVFRFGPLPETAVAEYVEQIAGEEGI 185
Query: 219 DVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLL 278
++T+ G+ ALV +GDMRKA+N LQ+ + + EEAVY T P++IE + +
Sbjct: 186 EITDDGVDALVYAADGDMRKAINGLQAAATTGETVDEEAVYAITAAARPEEIETMVQHAI 245
Query: 279 NESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFG 338
F + ++ ++ GL D++ ++ + ++ VRL+ + + +YR++ G
Sbjct: 246 GGDFTAARAKLDDLLTDWGLGGGDVIDQLHRSAWSFELDDQATVRLLERVGETDYRITQG 305
Query: 339 CNDK 342
N++
Sbjct: 306 ANER 309
>gi|159904872|ref|YP_001548534.1| replication factor C small subunit [Methanococcus maripaludis C6]
gi|226739142|sp|A9A6K6.1|RFCS_METM6 RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|159886365|gb|ABX01302.1| Replication factor C [Methanococcus maripaludis C6]
Length = 315
Score = 251 bits (640), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 121/309 (39%), Positives = 194/309 (62%), Gaps = 3/309 (0%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP++L +V H +I+ + + +PHLL G PG GKT+ LA+A+ LYG
Sbjct: 4 PWVEKYRPETLPEVVGHHEIIKRLTNYVEKKSMPHLLFSGSPGVGKTTAALALAKDLYGD 63
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFAL 161
+ LELN+SD+RGIDV+R +++DFA T+ A K++ LDE+DA+T DAQ AL
Sbjct: 64 TWRENFLELNSSDERGIDVIRTKVKDFARTKPIG---DAPFKVIFLDESDALTSDAQNAL 120
Query: 162 RRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVT 221
RR +EKY+ RF L CN +KIIP +QSRC FRF+PL+ + E LK + E E L +
Sbjct: 121 RRTMEKYSDICRFILSCNYPSKIIPPIQSRCAIFRFSPLKTEDLVENLKDISEKETLTLE 180
Query: 222 EGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNES 281
+GG+ A++ + GDMRKA+N+LQ+ S +TEE VY P +I++++ LN
Sbjct: 181 KGGIDAIIYVSEGDMRKAINVLQTAAAVSDTVTEEIVYKVASKARPDEIKKMTQLALNGK 240
Query: 282 FADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCND 341
F ++ +++ + + G++ DI+ +V V + + +V L+ + + ++R+ G N+
Sbjct: 241 FVEAREQLYNLMIDWGMSGEDILIQVFREVPNLDISEKEKVHLVEAIGECDFRIVEGSNE 300
Query: 342 KLQLGSIIS 350
++QL ++++
Sbjct: 301 RIQLSALLA 309
>gi|448376175|ref|ZP_21559459.1| replication factor C small subunit [Halovivax asiaticus JCM 14624]
gi|445658193|gb|ELZ11016.1| replication factor C small subunit [Halovivax asiaticus JCM 14624]
Length = 329
Score = 250 bits (639), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 121/308 (39%), Positives = 195/308 (63%), Gaps = 4/308 (1%)
Query: 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 102
W+EKYRP+SL DV H +IV + + ++ LPHL+ GP G GKT++ A+AR+LYG
Sbjct: 18 WIEKYRPESLDDVKGHENIVPRLRKYVEQDDLPHLMFAGPAGVGKTASAGAIARELYGED 77
Query: 103 YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALR 162
+ LELNASD+RGIDVVR +I++FA + SFG +++ LDEADA+T DAQ ALR
Sbjct: 78 WREHFLELNASDERGIDVVRDRIKNFARS---SFG-GVEYRIIFLDEADALTSDAQSALR 133
Query: 163 RVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTE 222
R +E+++ NTRF L CN ++II +QSRC FRF L + + + + E EG+ +T+
Sbjct: 134 RTMEQFSHNTRFILSCNYSSQIIDPIQSRCAVFRFTELSDEAIEAQTREIAETEGISLTD 193
Query: 223 GGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESF 282
G+ ALV GDMRKA+N LQ+ + +++ EEAV+ T P+++E++ + F
Sbjct: 194 DGVDALVYAAAGDMRKAINGLQAAAVMGEEVDEEAVFAITSTARPEEVERMVDQAIGGDF 253
Query: 283 ADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDK 342
+ + ++ +GLA D++ ++ ++ + VRL+ L +++YR++ G N++
Sbjct: 254 TAARATLEDLLTDRGLAGGDVIDQLHRSAWEFDLGEHETVRLLERLGEVDYRITEGANER 313
Query: 343 LQLGSIIS 350
LQL ++++
Sbjct: 314 LQLEAMLA 321
>gi|254168320|ref|ZP_04875166.1| Replication factor C family [Aciduliprofundum boonei T469]
gi|254169364|ref|ZP_04876193.1| Replication factor C family [Aciduliprofundum boonei T469]
gi|289595866|ref|YP_003482562.1| Replication factor C [Aciduliprofundum boonei T469]
gi|197621683|gb|EDY34269.1| Replication factor C family [Aciduliprofundum boonei T469]
gi|197622829|gb|EDY35398.1| Replication factor C family [Aciduliprofundum boonei T469]
gi|289533653|gb|ADD08000.1| Replication factor C [Aciduliprofundum boonei T469]
Length = 317
Score = 250 bits (639), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 124/315 (39%), Positives = 198/315 (62%), Gaps = 3/315 (0%)
Query: 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 102
WVEKYRP+SL +V +IVD + +PHLL GP GTGKT+ +A+AR+L+G
Sbjct: 5 WVEKYRPKSLDEVVGQDEIVDRLKSYVKAKTMPHLLFAGPAGTGKTTCAIALARELFGEN 64
Query: 103 YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALR 162
+ ELNASD+RGI +VR +I+++A T + + K++ LDEADA+T DAQ ALR
Sbjct: 65 WRASFHELNASDERGIGIVRTKIKEYARTAAPN---DVGFKIIFLDEADALTPDAQAALR 121
Query: 163 RVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTE 222
R +E Y++ RF L CN +KII +QSRC FRF PL+ + +RLK++ ++EG +TE
Sbjct: 122 RTMEMYSRTCRFILSCNYSSKIIEPIQSRCAVFRFTPLKSEDIKKRLKYIADSEGKKITE 181
Query: 223 GGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESF 282
L A+V + GDMRKA+NILQ + S I E VY TG +D+E + L F
Sbjct: 182 DALNAIVYISGGDMRKAINILQMSAAISDTIDEGVVYKATGLAKREDVEDVLKKALAGDF 241
Query: 283 ADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDK 342
++ +++++ + GL+ D+++++ ++ + + ++V L++ +IE+R+ G N++
Sbjct: 242 IEARNKLNKLLVELGLSGEDVIKQIHRVIYDLPIDDRLKVELLDKTGEIEFRIVEGANER 301
Query: 343 LQLGSIISTFTQARS 357
+QL ++++ FT A S
Sbjct: 302 IQLDALLAYFTLAGS 316
>gi|389860407|ref|YP_006362646.1| replication factor C small subunit [Thermogladius cellulolyticus
1633]
gi|388525310|gb|AFK50508.1| replication factor C small subunit [Thermogladius cellulolyticus
1633]
Length = 334
Score = 250 bits (639), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 128/310 (41%), Positives = 193/310 (62%), Gaps = 6/310 (1%)
Query: 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 102
W EKYRP++L +V +++V + + E +PHLL GPPGTGKT+ +A LYG
Sbjct: 16 WAEKYRPRTLDEVVNQKEVVARLKKFVEEKNMPHLLFAGPPGTGKTTLAHCLAHDLYGDN 75
Query: 103 YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALR 162
Y +LELNASD+RGIDV+R ++++FA T+ + K++LLDEAD MT DAQ ALR
Sbjct: 76 YRQYMLELNASDERGIDVIRSKVKEFARTR---VAGEVPFKIILLDEADNMTADAQQALR 132
Query: 163 RVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTE 222
R++E YT TRF LI N +KII +QSRC FRF PL V ERLK++ E E +
Sbjct: 133 RLMELYTATTRFILIANYPSKIIEPIQSRCAVFRFTPLSREDVVERLKYIAEKENVKYNT 192
Query: 223 GGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESF 282
L + L GDMRKA+NILQ+ A ++T EAVY G PK++ Q+ L+ +F
Sbjct: 193 EALETIHELSEGDMRKAINILQAAS-ALGEVTVEAVYKVVGLAHPKEVRQMLQLALSGNF 251
Query: 283 ADSFKRISEMKMRKGLALVDIVREVTMFVFK--IKMPSDVRVRLMNDLADIEYRLSFGCN 340
++ ++ E+ + GL+ +DI+R++ +F IK+ + R+ + + +I++RL G +
Sbjct: 252 TEARSKLRELMLNYGLSGLDIIRQIHREIFSSDIKLSDEARIMIADYAGEIQFRLVEGAD 311
Query: 341 DKLQLGSIIS 350
D++QL + ++
Sbjct: 312 DEIQLNAFLA 321
>gi|448388975|ref|ZP_21565470.1| replication factor C small subunit [Haloterrigena salina JCM 13891]
gi|445669262|gb|ELZ21874.1| replication factor C small subunit [Haloterrigena salina JCM 13891]
Length = 330
Score = 250 bits (638), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 121/321 (37%), Positives = 198/321 (61%), Gaps = 4/321 (1%)
Query: 32 SGTPPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTI 91
+ P + W+EKYRP+ L ++ H +IV + R + LPHL+ GP GTGKT+
Sbjct: 8 AAEPTPGRTEVWIEKYRPERLDEIKGHENIVPRLQRYVERDDLPHLMFAGPAGTGKTTAA 67
Query: 92 LAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEAD 151
A+AR++Y + LELNASD RGIDVVR +I+DFA + SFG +++ LDEAD
Sbjct: 68 QAIAREVYDDDWRENFLELNASDQRGIDVVRDRIKDFARS---SFG-GYDHRIIFLDEAD 123
Query: 152 AMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKH 211
A+T DAQ ALRR +E+++ NTRF L CN ++II +QSRC FRF L + +++
Sbjct: 124 ALTSDAQSALRRTMEQFSNNTRFILSCNYSSQIIDPIQSRCAVFRFTELTEDAIEAQVRE 183
Query: 212 VIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIE 271
+ E EG++VT+ G+ ALV +GDMRKA+N LQ+ + + + EE V+ T P+++E
Sbjct: 184 IAENEGIEVTDDGVDALVYAADGDMRKAINGLQAAAVMGETVDEETVFAITATARPEEVE 243
Query: 272 QISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADI 331
++ ++ F + + ++ +GLA D++ ++ ++ +P VRL+ L ++
Sbjct: 244 EMVEHAIDGDFTAARAALEDLLTERGLAGGDVIDQLHRSAWEFDIPELATVRLLERLGEV 303
Query: 332 EYRLSFGCNDKLQLGSIISTF 352
+YR++ G N++LQL +++++
Sbjct: 304 DYRITEGANERLQLEAMLASL 324
>gi|424814736|ref|ZP_18239914.1| replication factor C small subunit [Candidatus Nanosalina sp.
J07AB43]
gi|339758352|gb|EGQ43609.1| replication factor C small subunit [Candidatus Nanosalina sp.
J07AB43]
Length = 317
Score = 250 bits (638), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 117/308 (37%), Positives = 199/308 (64%), Gaps = 4/308 (1%)
Query: 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 102
W EKYRP +L++V +I+D + E +PH+L GP GTGKT++ +A+A+ LYG Q
Sbjct: 5 WTEKYRPDTLSEVVGQEEIIDRLSAFVEEESIPHMLYAGPAGTGKTTSAVALAKDLYGDQ 64
Query: 103 YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALR 162
++ +E NASD+RGIDVVR++I+DFA T+ ++A K++ LDEADA+T DAQ ALR
Sbjct: 65 WNQNFMETNASDERGIDVVREKIKDFARTKP----IEAEYKIIFLDEADALTPDAQQALR 120
Query: 163 RVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTE 222
R +E++T+N RF L CN +KII +QSRC FR+ LE V ++ + E+EG V+E
Sbjct: 121 RTMEQFTENCRFILSCNYSSKIIDPIQSRCAVFRYNRLEEEDVKNYIQRIGESEGFKVSE 180
Query: 223 GGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESF 282
L A++R+ +GD+R+ N+LQ+ + + +I EE VY + P++I +I L E F
Sbjct: 181 DALEAVMRVSDGDLRRVTNVLQTASIQNSEIEEEDVYGVAASLRPEEITKILELALKERF 240
Query: 283 ADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDK 342
D+ ++S++ + +GL D++ + V+ + + ++ ++++L + E+R+S G +
Sbjct: 241 MDARDQLSDLMIERGLDGQDVIDSIHREVYDLDISEQAKLTIIDNLGEFEFRISEGGSPD 300
Query: 343 LQLGSIIS 350
+Q+ ++++
Sbjct: 301 IQIEALLA 308
>gi|448611174|ref|ZP_21661808.1| replication factor C small subunit [Haloferax mucosum ATCC
BAA-1512]
gi|445743606|gb|ELZ95087.1| replication factor C small subunit [Haloferax mucosum ATCC
BAA-1512]
Length = 379
Score = 249 bits (637), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 124/302 (41%), Positives = 190/302 (62%), Gaps = 4/302 (1%)
Query: 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 102
W+EKYRPQ+L D+ +IV+ + + LPHLL GP G GKT++ A+AR +YG
Sbjct: 69 WIEKYRPQTLDDIYGQEEIVERLCSYIERDDLPHLLFAGPAGVGKTTSATAIARAIYGDD 128
Query: 103 YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALR 162
+ LELNASD RGIDVVR +I++FA + SFG +++ LDEAD++T DAQ ALR
Sbjct: 129 WRGNFLELNASDQRGIDVVRDRIKNFARS---SFG-GHDYRIIFLDEADSLTNDAQSALR 184
Query: 163 RVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTE 222
R +E+++ NTRF L CN +KII +QSRC FRF+PL + ++ + + E E +++TE
Sbjct: 185 RTMEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLGDDAIADQTRDIAETEEIELTE 244
Query: 223 GGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESF 282
GL ALV GDMR+A+N LQ+ + + EEAVY+ T P+DIE++ ++ F
Sbjct: 245 DGLDALVYAAGGDMRRAINSLQAAATTGEVVDEEAVYMITSTARPEDIEKMVRAAIDGEF 304
Query: 283 ADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDK 342
+ K++ + + G+A DI+ ++ V++ + VRLM + + +YR+S G N++
Sbjct: 305 TAARKQLETLIVDTGMAGGDIIDQLHRSVWEFDLDERAAVRLMERIGETDYRISEGANEQ 364
Query: 343 LQ 344
+Q
Sbjct: 365 VQ 366
>gi|448712798|ref|ZP_21701827.1| replication factor C small subunit [Halobiforma nitratireducens JCM
10879]
gi|445790224|gb|EMA40893.1| replication factor C small subunit [Halobiforma nitratireducens JCM
10879]
Length = 335
Score = 249 bits (637), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 120/321 (37%), Positives = 198/321 (61%), Gaps = 4/321 (1%)
Query: 32 SGTPPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTI 91
+ P K W+EKYRP+ L D+ H +IV + R ++ LPHL+ GP GTGKT+
Sbjct: 8 AAEPTPGKTEVWIEKYRPERLDDIKGHENIVPRLTRYVEQDDLPHLMFAGPAGTGKTTAA 67
Query: 92 LAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEAD 151
A+AR++Y + LELNASD RGIDVVR +I+DFA + SFG +++ LDEAD
Sbjct: 68 QAIAREVYEDDWQENFLELNASDQRGIDVVRDRIKDFARS---SFG-GYDHRIIFLDEAD 123
Query: 152 AMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKH 211
A+T DAQ ALRR +E+++ NTRF L CN ++II +QSRC FRF L + +++
Sbjct: 124 ALTSDAQSALRRTMEQFSSNTRFILSCNYSSQIIDPIQSRCAVFRFTELTDDAIEAQVRE 183
Query: 212 VIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIE 271
+ EG+++T+ G+ ALV +GDMRK +N LQ+ + + + E+ V+ T P+++E
Sbjct: 184 IATEEGIELTDDGVDALVYAADGDMRKGINGLQAAAVMGETVDEDTVFAITSTARPEEVE 243
Query: 272 QISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADI 331
++ ++ F + + ++ M +GLA D++ ++ ++ +P VRL+ L ++
Sbjct: 244 EMVDHAIDGDFTAARAALEDLLMDRGLAGGDVIDQLHRSAWEFDIPEQATVRLLERLGEV 303
Query: 332 EYRLSFGCNDKLQLGSIISTF 352
+YR++ G N++LQL +++++
Sbjct: 304 DYRITEGANERLQLEAMLASL 324
>gi|429191613|ref|YP_007177291.1| DNA polymerase III, subunit gamma/tau [Natronobacterium gregoryi
SP2]
gi|448325250|ref|ZP_21514645.1| replication factor C small subunit [Natronobacterium gregoryi SP2]
gi|429135831|gb|AFZ72842.1| DNA polymerase III, gamma/tau subunit [Natronobacterium gregoryi
SP2]
gi|445616034|gb|ELY69670.1| replication factor C small subunit [Natronobacterium gregoryi SP2]
Length = 330
Score = 249 bits (636), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 121/321 (37%), Positives = 199/321 (61%), Gaps = 4/321 (1%)
Query: 32 SGTPPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTI 91
+ P K W+EKYRP+ L ++ H +IV + R ++ LPHL+ GP G GKT++
Sbjct: 8 AAEPTPGKTEVWIEKYRPERLDEIKGHENIVPRLKRYVEQDDLPHLMFAGPAGVGKTASA 67
Query: 92 LAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEAD 151
A+AR++YG + LELNASD RGIDVVR +I+DFA + SFG +++ LDEAD
Sbjct: 68 QAIAREVYGDDWKENFLELNASDQRGIDVVRDRIKDFARS---SFG-GYDHRIIFLDEAD 123
Query: 152 AMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKH 211
A+T DAQ ALRR +E+++ NTRF L CN ++II +QSRC FRF L V +++
Sbjct: 124 ALTSDAQSALRRTMEQFSNNTRFILSCNYSSQIIDPIQSRCAVFRFTELGDDAVETQIRE 183
Query: 212 VIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIE 271
+ E +++T+ G+ ALV +GDMRKA+N LQ+ + + + EE V+ T P+++E
Sbjct: 184 IAATETIELTDNGVDALVYAADGDMRKAINGLQAAAVMGEVVDEETVFAITSTARPEEVE 243
Query: 272 QISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADI 331
++ ++ F + + ++ M +GLA D++ ++ ++ +P VRL+ L ++
Sbjct: 244 EMVEHAIDGDFTAARAALEDLLMDRGLAGGDVIDQLHRSAWEFDIPERATVRLLERLGEV 303
Query: 332 EYRLSFGCNDKLQLGSIISTF 352
+YR++ G N++LQL +++++
Sbjct: 304 DYRITEGANERLQLEAMLASL 324
>gi|325968175|ref|YP_004244367.1| replication factor C small subunit [Vulcanisaeta moutnovskia
768-28]
gi|323707378|gb|ADY00865.1| replication factor C small subunit [Vulcanisaeta moutnovskia
768-28]
Length = 338
Score = 249 bits (636), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 126/310 (40%), Positives = 190/310 (61%), Gaps = 5/310 (1%)
Query: 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 102
WVEKYRP + D+ ++ + + +L +PH+L YGPPGTGKT+ LA+AR+LYG
Sbjct: 8 WVEKYRPSRIDDIIDQEEVKERVKQLLKTGNMPHMLFYGPPGTGKTTMALAIARELYGDA 67
Query: 103 YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALR 162
+ +LELNASD+RGI +R+++++FA T KA KL++LDEAD MT DAQ ALR
Sbjct: 68 WRENVLELNASDERGITTIRERVKEFARTAPMG---KAPYKLIILDEADNMTSDAQQALR 124
Query: 163 RVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTE 222
R++E Y TRF LI N V++II +QSRC FRF+PL V RL+ + EG+ VT+
Sbjct: 125 RMMEMYANVTRFILIANYVSRIIDPIQSRCAMFRFSPLPKDAVLGRLRDIASREGVKVTD 184
Query: 223 GGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESF 282
L A+ + GDMRKA+N LQ+ +++IT E VY G PKDI + LN F
Sbjct: 185 EALEAIWDISQGDMRKAINTLQAATATAREITPEVVYKTVGYIEPKDIVDLVNIALNGDF 244
Query: 283 ADSFKRISEMKMRKGLALVDIVREVTMFVFK--IKMPSDVRVRLMNDLADIEYRLSFGCN 340
+ ++ + G++ +I+R + + I +P + +V + ADI+YRL+ G +
Sbjct: 245 IRARDKLRTLMYEHGVSGTEILRVIQRQIMSGAINVPDEAKVEIAETAADIDYRLTEGSD 304
Query: 341 DKLQLGSIIS 350
+++QL + ++
Sbjct: 305 EEIQLSAFLA 314
>gi|354609736|ref|ZP_09027692.1| Replication factor C small subunit [Halobacterium sp. DL1]
gi|353194556|gb|EHB60058.1| Replication factor C small subunit [Halobacterium sp. DL1]
Length = 323
Score = 249 bits (636), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 123/309 (39%), Positives = 191/309 (61%), Gaps = 4/309 (1%)
Query: 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 102
WVEKYRP+ L DV H DI + + + LPHLL GP GTGKT++ +++A+++YG
Sbjct: 12 WVEKYRPERLEDVVGHPDITERLQSYVDRDDLPHLLFAGPAGTGKTASAVSIAKEIYGDD 71
Query: 103 YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALR 162
+ LELNASD RGIDVVR +I++FA SFG +++ LDEADA+T DAQ ALR
Sbjct: 72 WQENFLELNASDQRGIDVVRDRIKNFARA---SFG-GYDYRVIFLDEADALTDDAQSALR 127
Query: 163 RVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTE 222
R +E+++ NTRF L CN +KII +QSRC FRF+ ++ V L+ + E L+ TE
Sbjct: 128 RTMEQFSNNTRFILSCNYSSKIIDPIQSRCAVFRFSQIDDDAVAAHLRDIAGREDLEYTE 187
Query: 223 GGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESF 282
G+ ALV +GDMR+A+N LQ+ + EE VY T P++IE + L+ F
Sbjct: 188 AGIDALVYAADGDMRRAINALQAASATGDAVDEEVVYAITATARPEEIEGMVTEALDGDF 247
Query: 283 ADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDK 342
+ + ++ +GLA DI+ ++ V+ + + VRL++ L + ++R++ G N++
Sbjct: 248 TAARSTLDDLLTNRGLAGGDIIDQIHRSVWSFDVEEEAAVRLLDRLGEADFRIAEGANER 307
Query: 343 LQLGSIIST 351
+QL +++++
Sbjct: 308 VQLEALLAS 316
>gi|126466118|ref|YP_001041227.1| replication factor C small subunit [Staphylothermus marinus F1]
gi|158513390|sp|A3DNV9.1|RFCS_STAMF RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|126014941|gb|ABN70319.1| replication factor C small subunit [Staphylothermus marinus F1]
Length = 329
Score = 249 bits (636), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 128/310 (41%), Positives = 196/310 (63%), Gaps = 6/310 (1%)
Query: 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 102
W EKYRP++L ++ +IV + + E +PHLL GPPGTGKT+ +A L+G
Sbjct: 13 WAEKYRPKTLDEIVDQEEIVSRLKQFVKERNMPHLLFAGPPGTGKTTAAHCLAHDLFGEN 72
Query: 103 YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALR 162
Y +LELNASD+RGIDV+R ++++FA T+ K+VLLDEAD MT DAQ ALR
Sbjct: 73 YRQYMLELNASDERGIDVIRSKVKEFARTR---VAANIPFKIVLLDEADNMTADAQQALR 129
Query: 163 RVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTE 222
R++E YT TRF LI N +KII +QSRC FRFAPL+ V RLK + E E +++ E
Sbjct: 130 RLMEMYTATTRFILIANYPSKIIEPIQSRCAVFRFAPLKKEDVISRLKWIAEQEKVEIDE 189
Query: 223 GGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESF 282
L A+ L GDMR+A+NILQ+ A ++T ++VY G P++I Q+ L +F
Sbjct: 190 EALEAIHDLSEGDMRRAINILQAA-AALGKVTVDSVYKVVGLAHPREIRQMIQLALAGNF 248
Query: 283 ADSFKRISEMKMRKGLALVDIVREVTMFVFK--IKMPSDVRVRLMNDLADIEYRLSFGCN 340
D+ +++ E+ + GL+ VD++++V +F IK+P + ++ + + +I++RL G +
Sbjct: 249 NDAREKLRELMINYGLSGVDVIKQVHREIFSTDIKIPDEFKIIIADLAGEIQFRLVEGAD 308
Query: 341 DKLQLGSIIS 350
D++QL + ++
Sbjct: 309 DEIQLNAFLA 318
>gi|452205944|ref|YP_007486066.1| replication factor C small subunit [Natronomonas moolapensis
8.8.11]
gi|452082044|emb|CCQ35295.1| replication factor C small subunit [Natronomonas moolapensis
8.8.11]
Length = 324
Score = 249 bits (635), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 123/302 (40%), Positives = 191/302 (63%), Gaps = 4/302 (1%)
Query: 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 102
W+EKYRPQ+L ++ H I + + + ++ LPHLL GP GTGKT++ +AVA+++YG
Sbjct: 14 WIEKYRPQALDEIVGHEGITERLKQYINQQDLPHLLFAGPAGTGKTTSSIAVAKEIYGDD 73
Query: 103 YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALR 162
+ LELNASD RGIDVVR +I+ FA SFG +++ LDEADA+T +AQ ALR
Sbjct: 74 WRENFLELNASDQRGIDVVRDRIKSFARA---SFG-GYDHRVIFLDEADALTSEAQSALR 129
Query: 163 RVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTE 222
R +E+++ NTRF L CN ++II +QSRC FRF+PL + E+++ + EAEG+++T+
Sbjct: 130 RTMEQFSDNTRFILSCNYSSQIIDPIQSRCAVFRFSPLGEAAIEEQIEAIAEAEGIEITD 189
Query: 223 GGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESF 282
G+ ALV GDMRKA+N LQ+ + + EEAVY T P++IE + L+ F
Sbjct: 190 DGMDALVYAAAGDMRKAINGLQAAAVVGGVVDEEAVYTITSTARPEEIETMVSAALDGDF 249
Query: 283 ADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDK 342
+ ++ + G+A DI+ ++ V++ + VRLM + + +YR++ G N++
Sbjct: 250 TAARAQLDTLLTDVGIAGGDIIDQMHRSVWEFDLGEREAVRLMERVGEADYRITAGANEQ 309
Query: 343 LQ 344
+Q
Sbjct: 310 IQ 311
>gi|435850632|ref|YP_007312218.1| DNA polymerase III, gamma/tau subunit [Methanomethylovorans
hollandica DSM 15978]
gi|433661262|gb|AGB48688.1| DNA polymerase III, gamma/tau subunit [Methanomethylovorans
hollandica DSM 15978]
Length = 333
Score = 249 bits (635), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 122/316 (38%), Positives = 191/316 (60%), Gaps = 3/316 (0%)
Query: 38 IKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARK 97
IK W+EKYRP L D+ + + + LPHLL GPPG GKT+T +++A++
Sbjct: 16 IKEEIWIEKYRPMRLDDIVGQTEAIARLKSYVKSRNLPHLLFSGPPGVGKTATAVSIAKE 75
Query: 98 LYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDA 157
L+ + ELNASD+RGIDVVR +I+ FA T A K++ LDEADA+T DA
Sbjct: 76 LFADSWRENFTELNASDERGIDVVRTKIKSFAKTSPIG---GADFKIIFLDEADALTSDA 132
Query: 158 QFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEG 217
Q ALRR +E+YT N RF L CN +KII +QSRC +RF PL VTER++ V EG
Sbjct: 133 QAALRRTMERYTNNCRFILSCNYSSKIIEPIQSRCAVYRFRPLSDDAVTERVRFVASNEG 192
Query: 218 LDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWL 277
++V G+ A+ + GDMRKA+N LQ+ + + ++ +Y T P+ I +
Sbjct: 193 IEVATDGMEAIKYVAQGDMRKAINALQAASLVDNVVHKDTIYKITATARPEQITDLINTA 252
Query: 278 LNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSF 337
L+ +F + K + E+ + +GL+ D+V ++ +F I +P + V L++ + ++++R++
Sbjct: 253 LSGNFMAARKYLDELLLDQGLSGEDVVGQIYRAMFNISIPQEKMVELIDVIGEVDFRIAE 312
Query: 338 GCNDKLQLGSIISTFT 353
G N+++QL ++I+ FT
Sbjct: 313 GANERIQLEALIAHFT 328
>gi|435845437|ref|YP_007307687.1| DNA polymerase III, gamma/tau subunit [Natronococcus occultus SP4]
gi|433671705|gb|AGB35897.1| DNA polymerase III, gamma/tau subunit [Natronococcus occultus SP4]
Length = 330
Score = 249 bits (635), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 122/321 (38%), Positives = 196/321 (61%), Gaps = 4/321 (1%)
Query: 32 SGTPPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTI 91
+ P K W+EKYRP+ L ++ H DIV + R +N LPHLL GP GTGKT+
Sbjct: 8 AAEPTPGKTEVWIEKYRPERLDEIKGHEDIVPRLQRYVEQNDLPHLLFAGPAGTGKTTAA 67
Query: 92 LAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEAD 151
A+AR++Y + LELNASD RGIDVVR +I+DFA + SFG +++ LDEAD
Sbjct: 68 QAIAREVYDDDWRENFLELNASDQRGIDVVRDRIKDFARS---SFG-GYDHRIIFLDEAD 123
Query: 152 AMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKH 211
A+T DAQ ALRR +E+++ NTRF L CN ++II +QSRC FRF L + +++
Sbjct: 124 ALTSDAQSALRRTMEQFSSNTRFILSCNYSSQIIDPIQSRCAVFRFTELTEDALEAQIRE 183
Query: 212 VIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIE 271
+ EG++VT+ G+ AL+ +GDMRKA+N LQ+ + + + EE V+ T P+++E
Sbjct: 184 IATEEGIEVTDDGVDALIYAADGDMRKAINGLQAAAVMGEVVDEETVFAITSTARPEEVE 243
Query: 272 QISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADI 331
+ ++ F + + ++ +GLA D++ ++ ++ + VRL+ L ++
Sbjct: 244 AMVDQAIDGDFTAARAALEDLLTERGLAGGDVIDQLHRSAWQFDISETATVRLLERLGEV 303
Query: 332 EYRLSFGCNDKLQLGSIISTF 352
+YR++ G N++LQL +++++
Sbjct: 304 DYRITEGANERLQLEAMLASL 324
>gi|448737973|ref|ZP_21720004.1| replication factor C small subunit [Halococcus thailandensis JCM
13552]
gi|445802557|gb|EMA52861.1| replication factor C small subunit [Halococcus thailandensis JCM
13552]
Length = 326
Score = 249 bits (635), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 121/304 (39%), Positives = 186/304 (61%), Gaps = 4/304 (1%)
Query: 39 KASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKL 98
+ W+EKYRP +LA+VA DI + + +++ LPHLL GP G GKT++ +A+AR++
Sbjct: 10 RGEIWIEKYRPSALAEVAGQDDITERLRSYVAQDDLPHLLFSGPAGVGKTTSAMAIAREI 69
Query: 99 YGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQ 158
YG + LELNASD+RGIDVVR +I++FA T SFG +++ LDEADA+T DAQ
Sbjct: 70 YGDDWRENFLELNASDERGIDVVRDRIKNFART---SFG-GYDYRVIFLDEADALTSDAQ 125
Query: 159 FALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGL 218
ALRR +E++ NTRF L CN N+II +QSRC FRF PL V E ++ + EG+
Sbjct: 126 SALRRTMEQFANNTRFILSCNYSNQIIDPIQSRCAVFRFGPLPETAVAEYVERIAGEEGI 185
Query: 219 DVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLL 278
++T+ G+ ALV +GDMRKA+N LQ+ + + EEAVY T P+ IE + +
Sbjct: 186 EITDDGVDALVYAADGDMRKAINGLQAAATTGETVDEEAVYAITAAARPEQIETMVQHAI 245
Query: 279 NESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFG 338
F + ++ ++ GL D++ ++ + ++ VRL+ + + +YR++ G
Sbjct: 246 GGDFTAARAKLDDLLTDWGLGGGDVIDQLHRSAWSFELDDQATVRLLERVGETDYRITQG 305
Query: 339 CNDK 342
N++
Sbjct: 306 ANER 309
>gi|386002033|ref|YP_005920332.1| replication factor C small subunit [Methanosaeta harundinacea 6Ac]
gi|357210089|gb|AET64709.1| Replication factor C small subunit [Methanosaeta harundinacea 6Ac]
Length = 368
Score = 249 bits (635), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 128/340 (37%), Positives = 201/340 (59%), Gaps = 9/340 (2%)
Query: 20 LKPKDNGKNVIVSGTPPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLL 79
++ +D G+ V G IK W+EKYRP SL DV +IV + +PHLL
Sbjct: 30 IRYRDRGQVVRKEGF--RIKEEIWIEKYRPMSLDDVVGQEEIVKRLKSYVRSRNVPHLLF 87
Query: 80 YGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVK 139
GPPG GKT+ +++ R+L+G ++ +ELNASD+RGIDVVR +++DFA
Sbjct: 88 SGPPGVGKTAAAISMVRELFGEEWRGNFIELNASDERGIDVVRHKVKDFARIAPLG---N 144
Query: 140 ASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAP 199
A K++ LDEADA+T DAQ ALRR +E+Y+ RF L CN +KII +QSRC +RF
Sbjct: 145 AEFKVIFLDEADALTNDAQSALRRTMERYSSICRFVLSCNYSSKIIEPIQSRCAVYRFRS 204
Query: 200 LEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVY 259
L V+ER+K + EAEG+ VT G+ A+V + GDMRKA+N LQ+ + + +TEE +Y
Sbjct: 205 LSEEAVSERMKTIAEAEGVKVTPEGMRAIVYVARGDMRKAINALQAASLMEESVTEETIY 264
Query: 260 LCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIV----REVTMFVFKIK 315
T P+ I + L +F + + ++ + +GL+ D++ R+ + +
Sbjct: 265 QITATARPEQIRDLMKTALAGNFTQARSLLDDLLLVQGLSGEDVIIQIHRQTLSLLDSHE 324
Query: 316 MPSDVRVRLMNDLADIEYRLSFGCNDKLQLGSIISTFTQA 355
+ VRLM+ + +I++R++ G N+++QL ++++ F A
Sbjct: 325 LSGPTLVRLMDRIGEIDFRMTEGANERIQLEALLAYFALA 364
>gi|448315838|ref|ZP_21505477.1| replication factor C small subunit [Natronococcus jeotgali DSM
18795]
gi|445610597|gb|ELY64367.1| replication factor C small subunit [Natronococcus jeotgali DSM
18795]
Length = 330
Score = 248 bits (634), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 121/321 (37%), Positives = 197/321 (61%), Gaps = 4/321 (1%)
Query: 32 SGTPPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTI 91
+ P K W+EKYRP+ L ++ H +IV + R ++ LPHL+ GP GTGKT+
Sbjct: 8 AAEPTPGKTEVWIEKYRPERLDEIKGHENIVPRLKRYVEQDDLPHLMFAGPAGTGKTTAA 67
Query: 92 LAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEAD 151
A+AR++Y + LELNASD RGIDVVR +I+DFA + SFG +++ LDEAD
Sbjct: 68 QAIAREVYDDDWRENFLELNASDQRGIDVVRDRIKDFARS---SFG-GYDHRIIFLDEAD 123
Query: 152 AMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKH 211
A+T DAQ ALRR +E+++ NTRF L CN ++II +QSRC FRF L V +++
Sbjct: 124 ALTSDAQSALRRTMEQFSSNTRFILSCNYSSQIIDPIQSRCAVFRFTELTEDAVEAQIRE 183
Query: 212 VIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIE 271
+ EG++VT+ G+ AL+ +GDMRKA+N LQ+ + + + EE V+ T P+++E
Sbjct: 184 IATEEGIEVTDDGVDALIYAADGDMRKAINGLQAAAVMGEVVDEETVFAITSTARPEEVE 243
Query: 272 QISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADI 331
+ ++ F + + ++ +GLA D++ ++ ++ +P VRL+ L ++
Sbjct: 244 AMVDRAIDGDFTAARAALEDLLTERGLAGGDVIDQLHRSAWQFDIPEKATVRLLERLGEV 303
Query: 332 EYRLSFGCNDKLQLGSIISTF 352
+YR++ G N++LQL +++++
Sbjct: 304 DYRITEGANERLQLEAMLASL 324
>gi|383620026|ref|ZP_09946432.1| replication factor C small subunit [Halobiforma lacisalsi AJ5]
gi|448696276|ref|ZP_21697837.1| replication factor C small subunit [Halobiforma lacisalsi AJ5]
gi|445783964|gb|EMA34788.1| replication factor C small subunit [Halobiforma lacisalsi AJ5]
Length = 330
Score = 248 bits (634), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 121/321 (37%), Positives = 196/321 (61%), Gaps = 4/321 (1%)
Query: 32 SGTPPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTI 91
+ P K W+EKYRP+ L ++ H +IV + R ++ LPHL+ GP GTGKT+
Sbjct: 8 AAEPTPGKTEVWIEKYRPERLDEIKGHENIVPRLKRYVEQDDLPHLMFAGPAGTGKTTAA 67
Query: 92 LAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEAD 151
A+AR++Y + LELNASD RGIDVVR +I+DFA + SFG +++ LDEAD
Sbjct: 68 QAIAREIYDDDWRENFLELNASDQRGIDVVRDRIKDFARS---SFG-GYDHRIIFLDEAD 123
Query: 152 AMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKH 211
A+T DAQ ALRR +E+++ NTRF L CN ++II +QSRC FRF L +++
Sbjct: 124 ALTSDAQSALRRTMEQFSSNTRFILSCNYSSQIIDPIQSRCAVFRFTELTDDATEAQVRE 183
Query: 212 VIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIE 271
+ EG++VT+ G+ ALV +GDMRKA+N LQ+ + + + EE V+ T P+++E
Sbjct: 184 IAAEEGIEVTDDGVDALVFAADGDMRKAINGLQAAAVMGETVDEETVFAITSTARPEEVE 243
Query: 272 QISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADI 331
++ ++ F + + ++ +GLA D++ ++ ++ +P VRL+ L ++
Sbjct: 244 EMVEHAIDGDFTAARAALEDLLTDRGLAGGDVIDQLHRSAWQFDIPERATVRLLERLGEV 303
Query: 332 EYRLSFGCNDKLQLGSIISTF 352
+YR++ G N++LQL ++++
Sbjct: 304 DYRITTGANERLQLEGMLASL 324
>gi|432328759|ref|YP_007246903.1| DNA polymerase III, gamma/tau subunit [Aciduliprofundum sp.
MAR08-339]
gi|432135468|gb|AGB04737.1| DNA polymerase III, gamma/tau subunit [Aciduliprofundum sp.
MAR08-339]
Length = 320
Score = 248 bits (634), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 120/313 (38%), Positives = 200/313 (63%), Gaps = 3/313 (0%)
Query: 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 102
WVEKYRP++L +V ++IV+ + +PHLL GP GTGKT+ +A+AR+L+G
Sbjct: 5 WVEKYRPKNLDEVVGQKEIVERLKSYVKAKSMPHLLFAGPAGTGKTTCAIALARELFGDN 64
Query: 103 YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALR 162
+ + ELNASD+RGI +VR +I+++A T + + K++ LDEADA+T DAQ ALR
Sbjct: 65 WRSSFHELNASDERGIGIVRTKIKEYARTAAPN---DVGFKIIFLDEADALTPDAQAALR 121
Query: 163 RVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTE 222
R +E Y++ RF L CN +KII +QSRC FRF PL+ + +RL+++ E EG ++T+
Sbjct: 122 RTMEMYSRTCRFILSCNYSSKIIEPIQSRCAVFRFTPLKAEDIKKRLRYIAENEGKEITD 181
Query: 223 GGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESF 282
L A+V + +GDMRKA+NILQ + S I E VY TG +D+E++ L F
Sbjct: 182 DALDAIVYISSGDMRKAINILQMSAAISDTIDEGTVYKATGIAKREDVEEVVKKALGGDF 241
Query: 283 ADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDK 342
+ +++++ + GL+ D+++++ ++ + + ++V L++ +IE+R+ G N++
Sbjct: 242 ISARNKLNKLLVELGLSGEDVIKQIHRVIYDLPIDDRLKVELLDRTGEIEFRMVEGANER 301
Query: 343 LQLGSIISTFTQA 355
+QL ++++ FT A
Sbjct: 302 IQLDALLAYFTLA 314
>gi|284163322|ref|YP_003401601.1| replication factor C [Haloterrigena turkmenica DSM 5511]
gi|284012977|gb|ADB58928.1| Replication factor C [Haloterrigena turkmenica DSM 5511]
Length = 330
Score = 248 bits (634), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 119/321 (37%), Positives = 199/321 (61%), Gaps = 4/321 (1%)
Query: 32 SGTPPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTI 91
+ P + W+EKYRP+ L ++ H +IV + + + LP+L+ GP GTGKT+
Sbjct: 8 AAEPTPGRTEVWIEKYRPERLDEIKGHENIVPRLKQYVERDELPNLMFAGPAGTGKTTAA 67
Query: 92 LAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEAD 151
+ +AR++YG + LELNASD RGIDVVR +I+DFA + SFG S +++ LDEAD
Sbjct: 68 VGIAREIYGDDWRENFLELNASDQRGIDVVRDRIKDFARS---SFG-GYSHRIIFLDEAD 123
Query: 152 AMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKH 211
A+T DAQ ALRR +E+++ NTRF L CN ++II +QSRC FRF L + +++
Sbjct: 124 ALTSDAQSALRRTMEQFSNNTRFILSCNYSSQIIDPIQSRCAVFRFTELTEDAIEAQVRE 183
Query: 212 VIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIE 271
+ EG++VT+ G+ ALV +GDMRKA+N LQ+ + + + EE V+ T P+++E
Sbjct: 184 IAANEGIEVTDDGVDALVYAADGDMRKAINGLQAAAVMGETVDEETVFAITATARPEEVE 243
Query: 272 QISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADI 331
++ ++ F + + ++ +GLA D++ ++ ++ +P VRL+ L ++
Sbjct: 244 KMVEHAIDGDFTAARAALEDLLTERGLAGGDVIDQLHRSAWEFDIPEMATVRLLERLGEV 303
Query: 332 EYRLSFGCNDKLQLGSIISTF 352
+YR++ G N++LQL +++++
Sbjct: 304 DYRITEGANERLQLEAMLASL 324
>gi|433637069|ref|YP_007282829.1| DNA polymerase III, gamma/tau subunit [Halovivax ruber XH-70]
gi|433288873|gb|AGB14696.1| DNA polymerase III, gamma/tau subunit [Halovivax ruber XH-70]
Length = 329
Score = 248 bits (633), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 123/313 (39%), Positives = 197/313 (62%), Gaps = 4/313 (1%)
Query: 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 102
W+EKYRP+SL DV H +IV + + ++ LPHL+ GP G GKT++ A+AR+LYG
Sbjct: 18 WIEKYRPESLDDVKGHENIVPRLRKYVEQDDLPHLMFAGPAGVGKTASAGAIARELYGED 77
Query: 103 YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALR 162
+ LELNASD+RGIDVVR +I++FA + SF GVK +++ LDEADA+T DAQ ALR
Sbjct: 78 WREHFLELNASDERGIDVVRDRIKNFARS-SFG-GVK--YRIIFLDEADALTSDAQSALR 133
Query: 163 RVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTE 222
R +E+++ NTRF L CN ++II +QSRC FRF L + + + + E EG+ +T+
Sbjct: 134 RTMEQFSHNTRFILSCNYSSQIIDPIQSRCAVFRFTELSDEAIEAQTREIAETEGISLTD 193
Query: 223 GGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESF 282
G+ ALV GDMRKA+N LQ+ + +++ E AV+ T P+++E++ + F
Sbjct: 194 DGVDALVYAAAGDMRKAINGLQAAAVMGEEVDEAAVFAITSTARPEEVEKMVDQAIGGDF 253
Query: 283 ADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDK 342
+ + ++ +GLA D++ ++ ++ + VRL+ L +++YR++ G N++
Sbjct: 254 TAARATLEDLLTDRGLAGGDVIDQLHRSAWEFDLGEHETVRLLERLGEVDYRITEGANER 313
Query: 343 LQLGSIISTFTQA 355
LQL ++++ A
Sbjct: 314 LQLEAMLAHLALA 326
>gi|156938086|ref|YP_001435882.1| replication factor C small subunit [Ignicoccus hospitalis KIN4/I]
gi|156567070|gb|ABU82475.1| replication factor C small subunit [Ignicoccus hospitalis KIN4/I]
Length = 329
Score = 248 bits (633), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 127/310 (40%), Positives = 196/310 (63%), Gaps = 6/310 (1%)
Query: 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 102
W EKYRP+SL ++ DIV + + E +PH+L GPPGTGKT+ LA+A LYG +
Sbjct: 9 WAEKYRPKSLDEIVDQEDIVRRLKKFVEEKNVPHMLFAGPPGTGKTTAALALAHDLYGEK 68
Query: 103 YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALR 162
Y ILELNASD+RGIDV+R ++++FA +++ KLV+LDEAD MT DAQ ALR
Sbjct: 69 YRQYILELNASDERGIDVIRTKVKEFARSRT---PPTVPFKLVILDEADNMTADAQQALR 125
Query: 163 RVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTE 222
R++E Y+ TRF L+ N +KII +QSRC FRF PL V ERLK++ + EG+ E
Sbjct: 126 RLMEMYSTTTRFILLANFPSKIIEPVQSRCVYFRFRPLPKDKVIERLKYICQKEGVQCEE 185
Query: 223 GGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESF 282
L + + GDMRKA+NILQ+ A ++T++AVY G P I++I + LN F
Sbjct: 186 DALEEIYNISEGDMRKAINILQAA-AALGKVTKDAVYKAIGYVHPSKIKEILEYALNGDF 244
Query: 283 ADSFKRISEMKMRKGLALVDIVR--EVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCN 340
S K + ++ + GL+ +D+++ + + ++P +++V L + ++++RL+ G +
Sbjct: 245 TKSAKLLRDVMIEYGLSGLDVLKMFQRELMGGSFELPEELKVLLADYAGEVQFRLAEGAD 304
Query: 341 DKLQLGSIIS 350
D++QL + ++
Sbjct: 305 DEVQLQAFLA 314
>gi|448337480|ref|ZP_21526557.1| replication factor C small subunit [Natrinema pallidum DSM 3751]
gi|445625386|gb|ELY78746.1| replication factor C small subunit [Natrinema pallidum DSM 3751]
Length = 330
Score = 248 bits (633), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 122/321 (38%), Positives = 195/321 (60%), Gaps = 4/321 (1%)
Query: 32 SGTPPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTI 91
+ P K W+EKYRP+ L D+ H DIV + ++ LPHLL GP GTGKT+
Sbjct: 8 AAEPTPGKTEVWIEKYRPERLDDIKGHTDIVPRLKNYVEQDDLPHLLFAGPAGTGKTTAA 67
Query: 92 LAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEAD 151
++AR++Y + LELNASD RGIDVVR +I+DFA + SFG S +++ LDEAD
Sbjct: 68 KSIAREVYDDDWQENFLELNASDQRGIDVVRDRIKDFARS---SFG-GYSHRIIFLDEAD 123
Query: 152 AMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKH 211
A+T DAQ ALRR +E+++ NTRF L CN ++II +QSRC FRF L + +++
Sbjct: 124 ALTSDAQSALRRTMEQFSNNTRFILSCNYSSQIIDPIQSRCAVFRFTELSADAIEAQVRE 183
Query: 212 VIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIE 271
+ E + VT+ G+ ALV +GDMRKA+N LQ+ + + + EE V+ T P+++E
Sbjct: 184 IAATEDIAVTDDGVDALVYAADGDMRKAINALQAAAVMGETVDEETVFAITATARPEEVE 243
Query: 272 QISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADI 331
+ ++ F + + ++ +GLA D++ ++ ++ +P VRL+ L ++
Sbjct: 244 AMVDHAIDGDFTAARAALEDLLTERGLAGGDVIDQLHRSAWEFDVPERATVRLLERLGEV 303
Query: 332 EYRLSFGCNDKLQLGSIISTF 352
+YR++ G N++LQL +++++
Sbjct: 304 DYRITEGANERLQLEAMLASL 324
>gi|256811337|ref|YP_003128706.1| replication factor C small subunit [Methanocaldococcus fervens
AG86]
gi|256794537|gb|ACV25206.1| Replication factor C [Methanocaldococcus fervens AG86]
Length = 316
Score = 248 bits (633), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 117/309 (37%), Positives = 194/309 (62%), Gaps = 3/309 (0%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP++L ++ +IV + + + +PHLL GPPG GKT+ L +AR L+G
Sbjct: 4 PWVEKYRPKTLDEIVGQDEIVKRLKKYVEKKSMPHLLFSGPPGVGKTTAALCLARDLFGE 63
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFAL 161
+ LELNASD+RGIDV+R +++DFA T+ K++ LDE+DA+T DAQ AL
Sbjct: 64 NWRENFLELNASDERGIDVIRTKVKDFARTKPIG---DVPFKIIFLDESDALTPDAQNAL 120
Query: 162 RRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVT 221
RR +EKY+ RF L CN +KIIP +QSRC FRF+PL+ + ++LK + E EGL +T
Sbjct: 121 RRTMEKYSDVCRFILSCNYPSKIIPPIQSRCAIFRFSPLKKEDIAKKLKEIAEKEGLKLT 180
Query: 222 EGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNES 281
E GL A++ + GDMRKA+N+LQ+ S+ I +E VY + P++++++ L
Sbjct: 181 ESGLEAIIYVSEGDMRKAINVLQTAAALSEVIDDEIVYKVSSRARPEEVKKMMELALEGK 240
Query: 282 FADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCND 341
F ++ + ++ + G++ DI+ ++ + + + +V L + + + ++R+ G N+
Sbjct: 241 FVEARDLLYKLMVEWGMSGEDILNQMFREINNLDIDERKKVELADAIGETDFRIVEGANE 300
Query: 342 KLQLGSIIS 350
++QL ++++
Sbjct: 301 RIQLSALLA 309
>gi|448450551|ref|ZP_21592370.1| replication factor C small subunit [Halorubrum litoreum JCM 13561]
gi|448522065|ref|ZP_21618330.1| replication factor C small subunit [Halorubrum distributum JCM
10118]
gi|445702339|gb|ELZ54293.1| replication factor C small subunit [Halorubrum distributum JCM
10118]
gi|445811665|gb|EMA61668.1| replication factor C small subunit [Halorubrum litoreum JCM 13561]
Length = 327
Score = 248 bits (633), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 125/312 (40%), Positives = 193/312 (61%), Gaps = 6/312 (1%)
Query: 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA- 101
W+EKYRPQ+L D+ +IV+ + +++ +PHLL GP G GKT+ A+AR++YG
Sbjct: 18 WIEKYRPQTLDDIHGQEEIVERLQSYIAQDDVPHLLFSGPAGVGKTTAATAIAREIYGED 77
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFAL 161
+ LELNASD RGIDVVR +I+ FA + SFG ++V LDE+D++T DAQ AL
Sbjct: 78 NWRGNFLELNASDQRGIDVVRDRIKGFARS---SFG--GDFRIVFLDESDSLTDDAQSAL 132
Query: 162 RRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVT 221
RR +E+++ NTRF L CN +KII +QSRC FRF+PL V ++ + AE ++VT
Sbjct: 133 RRTMEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLSDEAVGGMVREIAAAEEIEVT 192
Query: 222 EGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNES 281
+ G+ ALV +GDMR+A+N LQ+ + EEAVY T P++IE + LN
Sbjct: 193 DAGVDALVYAADGDMRRAINSLQAAATTGDVVDEEAVYAITATARPEEIESMVTDALNGD 252
Query: 282 FADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCND 341
FA + + + G+A D++ ++ V++ ++ VRLM + + +YR++ G N+
Sbjct: 253 FARARSTLDTLLTETGMAGGDVIDQLHRSVWEFELSEREAVRLMERIGEADYRIAEGANE 312
Query: 342 KLQLGSIISTFT 353
++QL S+++ T
Sbjct: 313 QVQLESLLAALT 324
>gi|322368069|ref|ZP_08042638.1| replication factor C small subunit [Haladaptatus paucihalophilus
DX253]
gi|320552085|gb|EFW93730.1| replication factor C small subunit [Haladaptatus paucihalophilus
DX253]
Length = 325
Score = 248 bits (633), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 119/314 (37%), Positives = 198/314 (63%), Gaps = 4/314 (1%)
Query: 39 KASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKL 98
+ + WVEKYRPQ+L DVA H DI + N LP+LL G G GKT+ +A+A++L
Sbjct: 12 RGTIWVEKYRPQTLDDVAGHDDITARLKSYIERNDLPNLLFSGQAGIGKTTCAVAIAKEL 71
Query: 99 YGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQ 158
YG + + LELNASD+RGIDVVR QI++FA + +++ LDEAD++T DAQ
Sbjct: 72 YGDSWQSHFLELNASDERGIDVVRDQIKNFARHDPGA----VDFQIIFLDEADSLTSDAQ 127
Query: 159 FALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGL 218
ALRR +E+++ TRF + CN +KII +QSRC FRF P+ V +++V + EG+
Sbjct: 128 AALRRTMEQFSDKTRFIMSCNYSSKIIDPIQSRCAVFRFGPIPDDAVAGYVQYVADEEGI 187
Query: 219 DVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLL 278
+ T+ G+ ALV +GDMRKA+N LQ+ + +Q+ EE+V++ T P+DI+++ +
Sbjct: 188 ETTDDGIEALVYAADGDMRKAINALQAAAVMGEQVDEESVFVITSTARPEDIKEMVRHAI 247
Query: 279 NESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFG 338
+ F S + E+ +G+A DI+ ++ +++ + D VR++ + + ++R++ G
Sbjct: 248 DGDFTRSRSILDELLTERGMAGGDIIDQLHRSIWEFDLDDDDAVRVLERVGEADFRITEG 307
Query: 339 CNDKLQLGSIISTF 352
N+++QL +++++
Sbjct: 308 ANERVQLEAMLASL 321
>gi|118431491|ref|NP_147997.2| replication factor C small subunit [Aeropyrum pernix K1]
gi|150421641|sp|Q9YBS7.3|RFCS_AERPE RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|116062816|dbj|BAA80521.2| replication factor C small subunit [Aeropyrum pernix K1]
Length = 325
Score = 248 bits (633), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 125/313 (39%), Positives = 196/313 (62%), Gaps = 6/313 (1%)
Query: 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 102
WVEKYRP+SL D+ + +V+ + + + +PHLL GPPGTGKT+ A+A L+G
Sbjct: 9 WVEKYRPRSLDDIVDQKHVVERLKQFVKQRNMPHLLFAGPPGTGKTTAAHALAHDLFGEN 68
Query: 103 YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALR 162
Y +LELNASD+RGI+V+R+++++FA +++ + K+VLLDEAD MT DAQ ALR
Sbjct: 69 YRQYMLELNASDERGINVIREKVKEFARSRT---PPEIPFKIVLLDEADNMTSDAQQALR 125
Query: 163 RVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTE 222
R++E Y+ TRF LI N +KII +QSRC FRF PL V ERL+++ E EG+D E
Sbjct: 126 RLMELYSSVTRFILIANYPSKIIDPIQSRCAFFRFQPLSKQDVIERLRYIAENEGVDYEE 185
Query: 223 GGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESF 282
L A+ + GDMRKA+N+LQ+ ++T +AVY G P+++ ++ L F
Sbjct: 186 EALDAIYEISEGDMRKAINVLQAASYLG-KVTVDAVYRVVGMAKPREVREMLATALKGDF 244
Query: 283 ADSFKRISEMKMRKGLALVDIVREV--TMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCN 340
+ + ++ + G++ D+ R++ +F ++KMP ++RV + L ++ YRL G +
Sbjct: 245 TAARSLLRKIMIEYGMSGEDVARQIHRELFSTELKMPEELRVLAADYLGEVHYRLVEGSD 304
Query: 341 DKLQLGSIISTFT 353
D +QL + ++ T
Sbjct: 305 DDIQLSAFLAWLT 317
>gi|297527205|ref|YP_003669229.1| Replication factor C [Staphylothermus hellenicus DSM 12710]
gi|297256121|gb|ADI32330.1| Replication factor C [Staphylothermus hellenicus DSM 12710]
Length = 329
Score = 248 bits (633), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 130/312 (41%), Positives = 199/312 (63%), Gaps = 10/312 (3%)
Query: 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 102
W EKYRP++L ++ +IV + R E +PHLL GPPGTGKT+ +A L+G
Sbjct: 13 WAEKYRPKTLDEIVNQEEIVSRLKRFVQERNMPHLLFAGPPGTGKTTAAHCLAHDLFGEN 72
Query: 103 YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASV--KLVLLDEADAMTKDAQFA 160
Y +LELNASD+RGIDV+R ++++FA T+ V A++ K+VLLDEAD MT DAQ A
Sbjct: 73 YRQYMLELNASDERGIDVIRSKVKEFARTR-----VTANIPFKIVLLDEADNMTADAQQA 127
Query: 161 LRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDV 220
LRR++E YT TRF LI N +KII +QSRC FRFAPL+ V RLK + E ++V
Sbjct: 128 LRRLMEMYTATTRFILIANYPSKIIEPIQSRCAVFRFAPLKKEDVISRLKWIANQEKVEV 187
Query: 221 TEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNE 280
E L A+ L GDMR+A+NILQ+ A ++T ++VY G P++I Q+ L
Sbjct: 188 DEEALEAIHDLSEGDMRRAINILQAA-AALGRVTVDSVYKVVGLAHPREIRQMIQLALAG 246
Query: 281 SFADSFKRISEMKMRKGLALVDIVREVTMFVFK--IKMPSDVRVRLMNDLADIEYRLSFG 338
+F D+ +++ ++ + GL+ VD++++V +F IK+P + ++ + + +I++RL G
Sbjct: 247 NFTDAREKLRKLMINYGLSGVDVIKQVHREIFSTDIKIPDEFKIIIADLAGEIQFRLVEG 306
Query: 339 CNDKLQLGSIIS 350
+D++QL + ++
Sbjct: 307 ADDEIQLNAFLA 318
>gi|305663891|ref|YP_003860179.1| replication factor C small subunit [Ignisphaera aggregans DSM
17230]
gi|304378460|gb|ADM28299.1| replication factor C small subunit [Ignisphaera aggregans DSM
17230]
Length = 323
Score = 248 bits (632), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 127/310 (40%), Positives = 196/310 (63%), Gaps = 6/310 (1%)
Query: 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 102
W EKYRP++L ++ +IV+ + + E +PHLL GPPGTGKT+ LA+A LYG +
Sbjct: 5 WAEKYRPKTLREIVNQEEIVNRLMKFVEEKNMPHLLFAGPPGTGKTTAALALAHDLYGDE 64
Query: 103 YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALR 162
+ +LELNASD+RGI V+R ++++FA ++ K+V+LDEAD MT DAQ ALR
Sbjct: 65 WRRYLLELNASDERGIAVIRSKVKEFARSK---LPGDIPFKIVILDEADNMTADAQQALR 121
Query: 163 RVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTE 222
R++E Y + TRF LI N +KII +QSRC FRF PL+ VT RL+ + E E + E
Sbjct: 122 RIMEMYVETTRFILIANYPSKIIDPIQSRCASFRFTPLKREDVTSRLRWICEQEKVKCDE 181
Query: 223 GGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESF 282
GL + L GDMRKA+NILQS A ++T VY G PK++ +I L+ F
Sbjct: 182 DGLDVIYELSGGDMRKAINILQSAS-ALGEVTVSNVYKVVGLAHPKEVREIITLALSGKF 240
Query: 283 ADSFKRISEMKMRKGLALVDIVREVTMFVFK--IKMPSDVRVRLMNDLADIEYRLSFGCN 340
++ ++ + + GL+ VDI++++ +F +K+P D+RV L + + +I++R+ G +
Sbjct: 241 IEARDKLHNLMIVYGLSGVDIIKQMHREIFSADLKIPEDIRVILADYIGEIQFRIVEGAD 300
Query: 341 DKLQLGSIIS 350
D++QL ++++
Sbjct: 301 DEIQLSALLA 310
>gi|448346878|ref|ZP_21535757.1| replication factor C small subunit [Natrinema altunense JCM 12890]
gi|445631215|gb|ELY84447.1| replication factor C small subunit [Natrinema altunense JCM 12890]
Length = 330
Score = 248 bits (632), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 122/321 (38%), Positives = 195/321 (60%), Gaps = 4/321 (1%)
Query: 32 SGTPPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTI 91
+ P K W+EKYRP+ L D+ H DIV + ++ LPHLL GP GTGKT+
Sbjct: 8 AAEPTPGKTEVWIEKYRPERLDDIKGHTDIVPRLKNYVEQDDLPHLLFAGPAGTGKTTAA 67
Query: 92 LAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEAD 151
++AR++Y + LELNASD RGIDVVR +I+DFA + SFG S +++ LDEAD
Sbjct: 68 KSIAREVYDDDWQENFLELNASDQRGIDVVRDRIKDFARS---SFG-GYSHRIIFLDEAD 123
Query: 152 AMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKH 211
A+T DAQ ALRR +E+++ NTRF L CN ++II +QSRC FRF L + +++
Sbjct: 124 ALTSDAQSALRRTMEQFSNNTRFILSCNYSSQIIDPIQSRCAVFRFTELTVDAIEAQVRE 183
Query: 212 VIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIE 271
+ E + VT+ G+ ALV +GDMRKA+N LQ+ + + + EE V+ T P+++E
Sbjct: 184 IAATEDIAVTDDGVDALVYAADGDMRKAINALQAAAVMGETVDEETVFAITATARPEEVE 243
Query: 272 QISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADI 331
+ ++ F + + ++ +GLA D++ ++ ++ +P VRL+ L ++
Sbjct: 244 AMVEHAIDGDFTAARAALEDLLTERGLAGGDVIDQLHRSAWEFDVPERATVRLLERLGEV 303
Query: 332 EYRLSFGCNDKLQLGSIISTF 352
+YR++ G N++LQL +++++
Sbjct: 304 DYRITEGANERLQLEAMLASL 324
>gi|307596342|ref|YP_003902659.1| replication factor C [Vulcanisaeta distributa DSM 14429]
gi|307551543|gb|ADN51608.1| Replication factor C [Vulcanisaeta distributa DSM 14429]
Length = 342
Score = 247 bits (631), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 124/312 (39%), Positives = 188/312 (60%), Gaps = 5/312 (1%)
Query: 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 102
WVEKYRP + D+ ++ + I + +PH+L YGPPGTGKT+ LA+AR+LYG
Sbjct: 8 WVEKYRPSRIDDIIDQEEVKERIKQFLKTGNMPHMLFYGPPGTGKTTMALAIARELYGDA 67
Query: 103 YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALR 162
+ +LELNASD+RGI +R+++++FA T KA KLV+LDEAD MT DAQ ALR
Sbjct: 68 WRENVLELNASDERGITTIRERVKEFARTAPMG---KAPYKLVILDEADNMTSDAQQALR 124
Query: 163 RVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTE 222
R++E Y TRF LI N V++II +QSRC FRF+PL V RL+ + EG+ VT
Sbjct: 125 RMMEMYANVTRFILIANYVSRIIDPIQSRCAMFRFSPLPKDAVLGRLREIASKEGVKVTN 184
Query: 223 GGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESF 282
L A+ + GDMRKA+N LQ+ +++IT E +Y G PKDI + + + F
Sbjct: 185 EALEAIWDVSQGDMRKAINTLQAAAATAKEITPEVIYKTVGYIEPKDIVDLVNTVFSGDF 244
Query: 283 ADSFKRISEMKMRKGLALVDIVREVTMFVF--KIKMPSDVRVRLMNDLADIEYRLSFGCN 340
+ ++ + G++ +I+R + + I +P + +V + ADI+YRL+ G +
Sbjct: 245 VKARDKLRTLMYEHGVSGTEILRAIQRQIMGGAINVPDEAKVEIAEAAADIDYRLTEGSD 304
Query: 341 DKLQLGSIISTF 352
+++QL + ++
Sbjct: 305 EEIQLSAFLAKL 316
>gi|424812315|ref|ZP_18237555.1| replication factor C small subunit [Candidatus Nanosalinarum sp.
J07AB56]
gi|339756537|gb|EGQ40120.1| replication factor C small subunit [Candidatus Nanosalinarum sp.
J07AB56]
Length = 317
Score = 247 bits (631), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 115/309 (37%), Positives = 194/309 (62%), Gaps = 4/309 (1%)
Query: 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 102
W EKYRP +L +V +DIV+ + E ++PHL+ GP GTGKT++ ++VA+ LYG++
Sbjct: 7 WTEKYRPDTLDEVVGQQDIVERLQAFVEEGQIPHLMFSGPAGTGKTTSAVSVAKDLYGSE 66
Query: 103 YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALR 162
+ E NASD+RGIDVVR QI+ FA T+ V A K++ LDEADA+T DAQ ALR
Sbjct: 67 WRQNFKETNASDERGIDVVRDQIKSFARTKP----VNAEYKMIFLDEADALTTDAQQALR 122
Query: 163 RVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTE 222
R +E+++ N RF L CN +KII +QSRC FRF LE V + V E EG ++E
Sbjct: 123 RTMEQFSDNARFVLSCNYSSKIIDPIQSRCALFRFNRLEEEQVRRYITRVAEGEGFRISE 182
Query: 223 GGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESF 282
+ ++R+ GD+R+ N+LQ+ + +I E+ +Y + P++I +I LN+ F
Sbjct: 183 EAIQGVMRVSGGDLRRTTNVLQTVALRKDEIEEDDIYTAAASLRPQEIREILKLALNQDF 242
Query: 283 ADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDK 342
D+ +++SE+ + +GL D++ V +F + +P + ++ ++ L + ++R++ G ++
Sbjct: 243 IDAREKLSELMIDRGLDGKDVIDAVHRELFDLDIPDEAKMEMVEFLGEYQFRIAEGGSND 302
Query: 343 LQLGSIIST 351
+Q+ +++++
Sbjct: 303 IQIEAMLAS 311
>gi|397772266|ref|YP_006539812.1| Replication factor C [Natrinema sp. J7-2]
gi|397681359|gb|AFO55736.1| Replication factor C [Natrinema sp. J7-2]
Length = 360
Score = 247 bits (630), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 121/314 (38%), Positives = 193/314 (61%), Gaps = 4/314 (1%)
Query: 39 KASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKL 98
K W+EKYRP+ L D+ H DIV + ++ LPHLL GP GTGKT+ ++AR++
Sbjct: 45 KTEVWIEKYRPERLNDIKGHTDIVPRLKNYVEQDDLPHLLFAGPAGTGKTTAAKSIAREV 104
Query: 99 YGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQ 158
Y + LELNASD RGIDVVR +I+DFA + SFG S +++ LDEADA+T DAQ
Sbjct: 105 YDDDWQENFLELNASDQRGIDVVRDRIKDFARS---SFG-GYSHRIIFLDEADALTSDAQ 160
Query: 159 FALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGL 218
ALRR +E+++ NTRF L CN ++II +QSRC FRF L + +++ + E +
Sbjct: 161 SALRRTMEQFSNNTRFILSCNYSSQIIDPIQSRCAVFRFTELTADAIEAQVREIAATEDI 220
Query: 219 DVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLL 278
VT+ G+ ALV +GDMRKA+N LQ+ + + + EE V+ T P+++E + +
Sbjct: 221 AVTDDGVDALVYAADGDMRKAINALQAAAVMGETVDEETVFAITATARPEEVEAMVEHAI 280
Query: 279 NESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFG 338
+ F + + ++ +GLA D++ ++ ++ +P VRL+ L +++YR++ G
Sbjct: 281 DGDFTAARAALEDLLTERGLAGGDVIDQLHRSAWEFDVPERATVRLLERLGEVDYRITEG 340
Query: 339 CNDKLQLGSIISTF 352
N++LQL +++++
Sbjct: 341 ANERLQLEAMLASL 354
>gi|167045379|gb|ABZ10035.1| putative ATPase family associated with various cellular activities
(AAA) [uncultured marine microorganism HF4000_APKG10F13]
Length = 323
Score = 246 bits (629), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 126/310 (40%), Positives = 188/310 (60%), Gaps = 3/310 (0%)
Query: 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 102
WVEKYRP +LA+V + + E +PHLL GPPGTGKT+ LA+AR+++G
Sbjct: 5 WVEKYRPATLAEVVGQSVVTTRLASYVREKSMPHLLFAGPPGTGKTTCSLALAREMFGEH 64
Query: 103 YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALR 162
+ + + ELNASD+RGIDVVR +I++FA T G K++ LDEADA+T AQ ALR
Sbjct: 65 WQHNLHELNASDERGIDVVRGKIKEFARTAPIGGG---GFKIIFLDEADALTSAAQAALR 121
Query: 163 RVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTE 222
R +EKY++ RF L CN +KII +QSRC FRF PL+ V LK + E L V +
Sbjct: 122 RTMEKYSRTCRFVLSCNYSSKIIEPIQSRCAVFRFRPLQGEDVQRYLKFIAGREKLKVND 181
Query: 223 GGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESF 282
AL L GD+R+A+N LQ A + IT E VY P ++ ++ L +F
Sbjct: 182 DAYEALAYLAQGDLRRAINSLQMAAAADKDITSEVVYQAVSAARPGEVREVLELALQGNF 241
Query: 283 ADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDK 342
A + +R+ + + GLA DI+R++ V ++++P + +V+L+ LA++++RLS G +
Sbjct: 242 AGARERLDALIITYGLAGEDILRQMHRTVRELEIPDEAKVQLIEKLAEVDFRLSEGATAR 301
Query: 343 LQLGSIISTF 352
+Q+ + I+ F
Sbjct: 302 IQIEAAIAHF 311
>gi|449672093|ref|XP_002154784.2| PREDICTED: replication factor C subunit 5-like [Hydra
magnipapillata]
Length = 186
Score = 246 bits (629), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 116/176 (65%), Positives = 142/176 (80%), Gaps = 4/176 (2%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP L D+ +H+DI+DTI + SE +LPHLL YGPPGTGKTSTILAVA++LY
Sbjct: 13 PWVEKYRPACLDDLISHKDIIDTIQKFISEGKLPHLLFYGPPGTGKTSTILAVAKQLYSP 72
Query: 102 -QYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFA 160
++H+M+LELNASDDRGI +VR+QI FAST++ K+ KLV+LDEADAMT DAQ A
Sbjct: 73 KEFHSMVLELNASDDRGIGIVREQILGFASTRTV---FKSKFKLVILDEADAMTNDAQNA 129
Query: 161 LRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAE 216
LRR++EKYT+NTRF LICN + IIPA+QSRCTRFRF PL+ V+ RLKHVI+ E
Sbjct: 130 LRRIMEKYTENTRFCLICNYLTGIIPAIQSRCTRFRFGPLDADQVSLRLKHVIQEE 185
>gi|150400153|ref|YP_001323920.1| replication factor C small subunit [Methanococcus vannielii SB]
gi|166225157|sp|A6US36.1|RFCS_METVS RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|150012856|gb|ABR55308.1| Replication factor C [Methanococcus vannielii SB]
Length = 315
Score = 246 bits (628), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 115/309 (37%), Positives = 195/309 (63%), Gaps = 3/309 (0%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP++L +V H++I+ + + +PHLL G PG GKT+ L +A+ LYG
Sbjct: 4 PWVEKYRPENLDEVVGHQEIIKRLKNYVEKKSMPHLLFSGSPGVGKTTAALCLAKDLYGN 63
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFAL 161
+ LELN+SD+RGIDV+R +++DFA T+ A K++ LDE+DA+T DAQ AL
Sbjct: 64 TWKENFLELNSSDERGIDVIRTKVKDFARTKPIG---DAPFKVIFLDESDALTSDAQNAL 120
Query: 162 RRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVT 221
RR +EKY+ RF L CN +KIIP +QSRC FRF+PL+ + + LK + E E ++V
Sbjct: 121 RRTMEKYSDICRFVLSCNYPSKIIPPIQSRCAIFRFSPLKTEDLVKNLKEISEKESINVE 180
Query: 222 EGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNES 281
+ G+ A++ + GDMRKA+N+LQ+ S+ I E +Y P +I++++ LN
Sbjct: 181 KSGMDAIIYVSEGDMRKAINVLQTGAAVSKNINETVIYKVASKARPDEIKKMTELALNGK 240
Query: 282 FADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCND 341
F ++ +++ ++ + G++ DI+ ++ V +++ +V L+ + + ++R+ G N+
Sbjct: 241 FVEAREQLYKLMIDWGMSGEDIIIQIFREVPNLEISEKEKVHLVEAIGECDFRIVEGANE 300
Query: 342 KLQLGSIIS 350
++QL ++++
Sbjct: 301 RIQLSALLA 309
>gi|401825330|ref|XP_003886760.1| replication factor C small subunit [Encephalitozoon hellem ATCC
50504]
gi|392997916|gb|AFM97779.1| replication factor C small subunit [Encephalitozoon hellem ATCC
50504]
Length = 308
Score = 246 bits (627), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 129/315 (40%), Positives = 197/315 (62%), Gaps = 14/315 (4%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PW EKYRP+SL +V +R++V + + ++P++L YGPPGTGKT++I A+A L
Sbjct: 4 PWTEKYRPRSLLEVVGNREVVAALQSIADAGKIPNMLFYGPPGTGKTTSIRAIANSLP-- 61
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFAL 161
+ +LELNASD+RGI VR+ I+DFAST S KLV+LDEAD M++DAQ AL
Sbjct: 62 --RSCVLELNASDERGIATVRETIKDFASTYS------KVTKLVILDEADMMSRDAQNAL 113
Query: 162 RRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVT 221
RR+IE ++ NTRF LI N KIIP + SRCT+FRF P+E R++ + + EG+ T
Sbjct: 114 RRIIEDFSANTRFCLIANHSKKIIPPILSRCTKFRFGPIEGTE--GRIEEICKREGIRYT 171
Query: 222 EGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNES 281
G+ AL ++ GDMRKA+N +Q ++ + EE V+ G + E++ L + S
Sbjct: 172 SKGITALAKISEGDMRKAVNDVQGISLSLGVVDEENVHKFNGIAPVQVYEELFMDLKSMS 231
Query: 282 FADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCND 341
++ R+ ++K G+ ++ ++ V K +M + +++++ ++ DIE R+S GCN+
Sbjct: 232 MSELRTRLEDLKYEYGMDCNALIENLSGIVRKSRMRN--KMKMLKEMGDIERRMSIGCNE 289
Query: 342 KLQLGSIISTFTQAR 356
KLQL +IIS F R
Sbjct: 290 KLQLDAIISVFILNR 304
>gi|358332382|dbj|GAA51055.1| replication factor C subunit 3/5 [Clonorchis sinensis]
Length = 403
Score = 245 bits (626), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 120/250 (48%), Positives = 176/250 (70%), Gaps = 3/250 (1%)
Query: 110 LNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYT 169
LNASD RGI+VVR+Q+ FAST+S G KLV+LDEAD+MTKDAQ ALRR++EK+T
Sbjct: 152 LNASDARGINVVREQVLSFASTKSLFAG---KFKLVILDEADSMTKDAQNALRRIVEKFT 208
Query: 170 KNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALV 229
+NTRF LICN ++KIIPA+QSRCT+FRFAP+ + RLK + E + +T+ G+ A+
Sbjct: 209 ENTRFCLICNYLSKIIPAIQSRCTKFRFAPVSFQQMQPRLKEIATTEKVVLTDDGMKAIY 268
Query: 230 RLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRI 289
R +GDMRKA+N++QS M++ +I E +VY C P P +I ++ +LNE +FK +
Sbjct: 269 RFTSGDMRKAINLMQSAAMSAPKIDESSVYACVAYPSPAEIRSLTDSMLNEPIHSAFKNM 328
Query: 290 SEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDKLQLGSII 349
K KG+AL DI+ E+ V KI P VR L+ LA++E+R+S G +++LQL +++
Sbjct: 329 LATKNLKGIALQDILTELHPLVMKINFPDSVRCDLIIALAELEHRMSVGASERLQLAALV 388
Query: 350 STFTQARSAI 359
++F +A+S++
Sbjct: 389 ASFARAKSSL 398
>gi|448312591|ref|ZP_21502333.1| replication factor C small subunit [Natronolimnobius
innermongolicus JCM 12255]
gi|445601042|gb|ELY55036.1| replication factor C small subunit [Natronolimnobius
innermongolicus JCM 12255]
Length = 330
Score = 245 bits (626), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 118/313 (37%), Positives = 192/313 (61%), Gaps = 4/313 (1%)
Query: 32 SGTPPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTI 91
+ P K W+EKYRP+ L ++ H +I+ + ++ LPH++ GP G GKT++
Sbjct: 8 AAEPTPGKTEVWIEKYRPERLDEIKGHENIIPRLKNYVEQDDLPHIMFAGPAGVGKTASS 67
Query: 92 LAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEAD 151
A+AR++YG + LELNASD RGIDVVR +I+DFA + SFG + +++ LDEAD
Sbjct: 68 QAIAREIYGDDWRENFLELNASDQRGIDVVRDRIKDFARS---SFG-GYNYRIIFLDEAD 123
Query: 152 AMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKH 211
A+T DAQ ALRR +E+++ NTRF L CN ++II +QSRC FRF L + +++
Sbjct: 124 ALTSDAQSALRRTMEQFSNNTRFILSCNYSSQIIDPIQSRCAVFRFTELTDDAIEAQVRE 183
Query: 212 VIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIE 271
+ + EG+ VT+ G+ ALV +GDMRKA+N LQ+ + + + EE V+ T P+++E
Sbjct: 184 IADTEGIAVTDDGVDALVYAADGDMRKAINGLQAAAVMGETVDEETVFAITSTARPEEVE 243
Query: 272 QISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADI 331
+ + F + + ++ M +GLA D++ ++ ++ +P VRL+ L ++
Sbjct: 244 AMVDHAIAGDFTAARAALEDLLMERGLAGGDVIDQLHRSAWEFDIPEQATVRLLERLGEV 303
Query: 332 EYRLSFGCNDKLQ 344
+YR++ G N++LQ
Sbjct: 304 DYRITEGANERLQ 316
>gi|332796204|ref|YP_004457704.1| DNA replication factor C, small subunit [Acidianus hospitalis W1]
gi|332693939|gb|AEE93406.1| DNA replication factor C, small subunit [Acidianus hospitalis W1]
Length = 326
Score = 245 bits (625), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 129/326 (39%), Positives = 203/326 (62%), Gaps = 10/326 (3%)
Query: 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 102
W EKYRP+SL D+ +DIV+ + R E +PHLL GPPGTGKT+ LA+ LYG
Sbjct: 7 WAEKYRPRSLDDIVNQKDIVERLKRFVKEKNMPHLLFAGPPGTGKTTAALALVHDLYGDS 66
Query: 103 YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASV--KLVLLDEADAMTKDAQFA 160
Y LELNASD+RGIDV+R ++++FA T V +SV K++LLDEAD MT DAQ A
Sbjct: 67 YEQFFLELNASDERGIDVIRNKVKEFARTM-----VSSSVPFKVILLDEADNMTADAQQA 121
Query: 161 LRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDV 220
LRR +E YT++TRF L CN ++KII +QSR FRF PL+ V RL+ + + E ++
Sbjct: 122 LRRTMELYTESTRFILACNYLSKIIDPIQSRTALFRFYPLKKEDVVSRLEFIAKEEKVEY 181
Query: 221 TEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNE 280
E L + + GDMRKA+N LQ+ A ++T E V+ G PK++ + L+
Sbjct: 182 DEKALETIYDVTMGDMRKAINTLQAAS-AYGKVTIETVFKVLGLAQPKEVRDMLKLALSG 240
Query: 281 SFADSFKRISEMKMRKGLALVDIVREV--TMFVFKIKMPSDVRVRLMNDLADIEYRLSFG 338
F ++ +++ + + GL+ DIV+++ + ++++P ++RV LM+ + ++E+R+ G
Sbjct: 241 KFMEAREKLRSLLVTYGLSGEDIVKQLHRELTSNELQIPEELRVLLMDYIGEVEFRIIEG 300
Query: 339 CNDKLQLGSIISTFTQARSAIVAAAK 364
+D++QL ++++ + V ++K
Sbjct: 301 ADDEIQLSALLAKIAIYGNKYVGSSK 326
>gi|448342324|ref|ZP_21531276.1| replication factor C small subunit [Natrinema gari JCM 14663]
gi|445626315|gb|ELY79664.1| replication factor C small subunit [Natrinema gari JCM 14663]
Length = 330
Score = 245 bits (625), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 120/314 (38%), Positives = 192/314 (61%), Gaps = 4/314 (1%)
Query: 39 KASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKL 98
K W+EKYRP+ L D+ H DIV + ++ LPHLL GP GTGKT+ ++AR++
Sbjct: 15 KTEVWIEKYRPERLDDIKGHTDIVPRLKNYVEQDDLPHLLFAGPAGTGKTTAAKSIAREV 74
Query: 99 YGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQ 158
Y + LELNASD RGIDVVR +I+DFA + SFG S +++ LDEADA+T DAQ
Sbjct: 75 YDDDWQENFLELNASDQRGIDVVRDRIKDFARS---SFG-GYSHRIIFLDEADALTSDAQ 130
Query: 159 FALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGL 218
ALRR +E+++ NTRF L CN ++II +QSRC FRF L + +++ + E +
Sbjct: 131 SALRRTMEQFSNNTRFILSCNYSSQIIDPIQSRCAVFRFTELTADAIEAQVREIAATEDI 190
Query: 219 DVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLL 278
VT+ G+ ALV +GDMRKA+N LQ+ + + + E V+ T P+++E + +
Sbjct: 191 AVTDDGVDALVYAADGDMRKAINALQAAAVMGETVDEGTVFAITATARPEEVEAMVEHAI 250
Query: 279 NESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFG 338
+ F + + ++ +GLA D++ ++ ++ +P VRL+ L +++YR++ G
Sbjct: 251 DGDFTAARAALEDLLTERGLAGGDVIDQLHRSAWEFDVPERATVRLLERLGEVDYRITEG 310
Query: 339 CNDKLQLGSIISTF 352
N++LQL +++++
Sbjct: 311 ANERLQLEAMLASL 324
>gi|448471999|ref|ZP_21601026.1| replication factor C small subunit [Halorubrum aidingense JCM
13560]
gi|445820426|gb|EMA70249.1| replication factor C small subunit [Halorubrum aidingense JCM
13560]
Length = 327
Score = 245 bits (625), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 123/303 (40%), Positives = 184/303 (60%), Gaps = 6/303 (1%)
Query: 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA- 101
W+EKYRPQSL D+ IV+ + ++ +PHLL GP G GKT+ A+AR++YG
Sbjct: 18 WIEKYRPQSLGDIHGQEAIVERLQSYIDQDDIPHLLFSGPAGVGKTTAATAIAREVYGED 77
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFAL 161
+ LELNASD RGIDVVR +I+ FA + SFG ++V LDEAD++T DAQ AL
Sbjct: 78 NWRGNFLELNASDQRGIDVVRDRIKGFARS---SFG--GDFRIVFLDEADSLTDDAQSAL 132
Query: 162 RRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVT 221
RR +E+++ NTRF L CN +KII +QSRC FRF+PL V + + + AEG++VT
Sbjct: 133 RRTMEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLSDAAVAGQTREIAAAEGIEVT 192
Query: 222 EGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNES 281
+ G+ ALV +GDMR+A+N LQ+ + EEAVY T P++IE + L
Sbjct: 193 DAGVDALVYAADGDMRRAINSLQAAATTGDVVDEEAVYAITATARPEEIESMVTDALAGD 252
Query: 282 FADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCND 341
FA + + + G+A D++ ++ V++ + V+LM + + +YR++ G N+
Sbjct: 253 FAKARATLDSLLTETGMAGGDVIDQLHRSVWEFDLSEREAVKLMERIGEADYRIAEGANE 312
Query: 342 KLQ 344
++Q
Sbjct: 313 QVQ 315
>gi|448357101|ref|ZP_21545808.1| replication factor C small subunit [Natrialba chahannaoensis JCM
10990]
gi|445650274|gb|ELZ03200.1| replication factor C small subunit [Natrialba chahannaoensis JCM
10990]
Length = 339
Score = 244 bits (624), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 117/310 (37%), Positives = 192/310 (61%), Gaps = 4/310 (1%)
Query: 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 102
W+EKYRP+ L ++ H +IV + R ++ LPHL+ GP GTGKT+ A+AR++Y
Sbjct: 29 WIEKYRPERLDEIKGHENIVPRLQRYVEQDDLPHLMFAGPAGTGKTTAAQAIAREVYDDD 88
Query: 103 YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALR 162
+ LELNASD RGIDVVR +I+DFA SFG +++ LDEADA+T DAQ ALR
Sbjct: 89 WRENFLELNASDQRGIDVVRDRIKDFARA---SFG-GYDHRIIFLDEADALTSDAQSALR 144
Query: 163 RVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTE 222
R +E+++ NTRF L CN ++II +QSRC FRF L + +++ + + ++VT+
Sbjct: 145 RTMEQFSNNTRFILSCNYSSQIIDPIQSRCAVFRFTQLTETAIEAQVREIAADQDIEVTD 204
Query: 223 GGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESF 282
G+ ALV +GDMRKA+N LQ+ + + + EE V+ T P+++EQ+ + F
Sbjct: 205 DGVDALVYAADGDMRKAINALQAAAVMGETVDEETVFAITATARPEEVEQMVDQAIAGDF 264
Query: 283 ADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDK 342
+ + ++ +GLA D++ ++ ++ +P VRL+ L ++++R++ G N++
Sbjct: 265 TAARASLEDLLTDRGLAGGDVIDQLHRSAWEFDIPEQETVRLLEQLGEVDFRITEGANER 324
Query: 343 LQLGSIISTF 352
LQL +++++
Sbjct: 325 LQLEAMLASL 334
>gi|336252796|ref|YP_004595903.1| Replication factor C small subunit [Halopiger xanaduensis SH-6]
gi|335336785|gb|AEH36024.1| Replication factor C small subunit [Halopiger xanaduensis SH-6]
Length = 336
Score = 244 bits (624), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 117/314 (37%), Positives = 194/314 (61%), Gaps = 4/314 (1%)
Query: 39 KASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKL 98
K W+EKYRP+ L ++ H DI+ + ++ LPHL+ GP GTGKT+ A+AR++
Sbjct: 21 KTEVWIEKYRPERLDEIKGHEDIIPRLKNYVEQDDLPHLMFAGPAGTGKTTAAQAIAREI 80
Query: 99 YGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQ 158
Y + LELNASD RGIDVVR +I+DFA + SFG +++ LDEADA+T DAQ
Sbjct: 81 YDDDWRENFLELNASDQRGIDVVRDRIKDFARS---SFG-GYDHRIIFLDEADALTSDAQ 136
Query: 159 FALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGL 218
ALRR +E+++ NTRF L CN ++II +QSRC FRF L + +++ + + +
Sbjct: 137 SALRRTMEQFSNNTRFILSCNYSSQIIDPIQSRCAVFRFTELTDNAIEAQVREIAADQDI 196
Query: 219 DVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLL 278
+VT+ G+ ALV +GDMRKA+N LQ+ + + + EE V+ T P+++E++ +
Sbjct: 197 EVTDDGVDALVYAADGDMRKAINALQAAAVMGETVDEETVFAITATARPEEVEEMVGHAI 256
Query: 279 NESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFG 338
+ F + + ++ +GLA D++ ++ ++ +P VRL+ L +++YR++ G
Sbjct: 257 DGDFTAARAALEDLLTDRGLAGGDVIDQLHRSAWEFDIPEQATVRLLERLGEVDYRITEG 316
Query: 339 CNDKLQLGSIISTF 352
N++LQL +++++
Sbjct: 317 ANERLQLEAMLASL 330
>gi|222445467|ref|ZP_03607982.1| hypothetical protein METSMIALI_01106 [Methanobrevibacter smithii
DSM 2375]
gi|261349971|ref|ZP_05975388.1| replication factor C small subunit [Methanobrevibacter smithii DSM
2374]
gi|222435032|gb|EEE42197.1| replication factor C small subunit [Methanobrevibacter smithii DSM
2375]
gi|288860754|gb|EFC93052.1| replication factor C small subunit [Methanobrevibacter smithii DSM
2374]
Length = 315
Score = 244 bits (623), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 121/317 (38%), Positives = 190/317 (59%), Gaps = 8/317 (2%)
Query: 40 ASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLY 99
+ PWVEKYRPQ+L D+ + IV+ + + E +P+L+ GP G GKT+T +A+ + +
Sbjct: 2 SGPWVEKYRPQNLDDIIGQKQIVNRLQKYVGEESMPNLMFTGPAGVGKTTTAIALVKAIL 61
Query: 100 GAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQF 159
G + LELNASD RGID VR I++F + V A +++ LDE D MTKDAQ
Sbjct: 62 GEYWRQNFLELNASDARGIDTVRNDIKNFCRLKP----VGAPFRIIFLDEVDNMTKDAQH 117
Query: 160 ALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLD 219
ALRR +E YTK F L CN +KII +QSRC FRF P++ + RLK++ +EG +
Sbjct: 118 ALRREMEMYTKTASFILSCNYSSKIIDPIQSRCAIFRFGPIKGEEIANRLKYICTSEGFE 177
Query: 220 VTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLN 279
T+GG+ A+ GDMRKA+N+LQ+ +Q+ E+AVY P+D+ + L+
Sbjct: 178 YTDGGIEAIEYFAEGDMRKAVNVLQAAASEGKQVDEDAVYEVVSKAKPQDVHNLITKALS 237
Query: 280 ESFADSFKRISEMKMRKGLALVDIV----REVTMFVFKIKMPSDVRVRLMNDLADIEYRL 335
F + + E + +G + D+V ++V+ VF+ KM +D+ + L+ +AD ++R+
Sbjct: 238 GDFMGARNLLRETMVLQGTSGEDMVSQIYQDVSKRVFEGKMEADIYIDLIEAIADCDFRI 297
Query: 336 SFGCNDKLQLGSIISTF 352
G N ++QL ++++ F
Sbjct: 298 REGANPRIQLEALLTQF 314
>gi|303388295|ref|XP_003072382.1| DNA replication factor C small subunit [Encephalitozoon
intestinalis ATCC 50506]
gi|303301522|gb|ADM11022.1| DNA replication factor C small subunit [Encephalitozoon
intestinalis ATCC 50506]
Length = 305
Score = 244 bits (623), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 131/312 (41%), Positives = 194/312 (62%), Gaps = 16/312 (5%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PW EKYRP+SL V +R+IV + ++S N++P++L YGPPGTGKT++I A+A L
Sbjct: 4 PWTEKYRPESLQQVVGNREIVAALKSISSTNKIPNMLFYGPPGTGKTTSIRAIANNLP-- 61
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFAL 161
+ +LELNASD+RGI VR+ I++FAST S + KLV+LDEAD M++DAQ AL
Sbjct: 62 --RSCVLELNASDERGIATVRETIKEFASTYS------KTTKLVILDEADMMSRDAQNAL 113
Query: 162 RRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVT 221
RR+IE ++ N RF LI N KIIP + SRCT+FRF P+E R+K + + E + +
Sbjct: 114 RRIIEDFSANARFCLIANHSRKIIPPILSRCTKFRFGPIEDTE--SRIKEICKKENIKYS 171
Query: 222 EGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDI-EQISYWLLNE 280
E G+ + + GDMRKA+N +Q ++ I+ E V G P D+ E++ L
Sbjct: 172 EEGIKGIAEISEGDMRKAVNDVQGISVSLGPISLENVRKFNG-VAPIDVYEELFENLKTM 230
Query: 281 SFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCN 340
S AD + E+K G+ D+++ ++ V K M ++R++ ++ DIEYR S GC+
Sbjct: 231 SMADLRVKCEELKYEHGMDSDDLLKNLSKMVRKSNMKE--KMRILKEMGDIEYRRSIGCS 288
Query: 341 DKLQLGSIISTF 352
+K+Q +IIS F
Sbjct: 289 EKVQTDAIISVF 300
>gi|327401750|ref|YP_004342589.1| replication factor C small subunit [Archaeoglobus veneficus SNP6]
gi|327317258|gb|AEA47874.1| Replication factor C small subunit [Archaeoglobus veneficus SNP6]
Length = 322
Score = 244 bits (622), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 118/316 (37%), Positives = 194/316 (61%), Gaps = 3/316 (0%)
Query: 38 IKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARK 97
++A WVEKYRP++L +V +++ + +PHLL GPPGTGKT++ +A+AR
Sbjct: 3 VEAEIWVEKYRPRTLKEVVGQEEVIQRLMGYVERKNIPHLLFAGPPGTGKTASAIALARD 62
Query: 98 LYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDA 157
L+G + + +E+NASD+RGIDVVR +I++FA T A K++ LDEADA+T DA
Sbjct: 63 LFGENWRDNFIEMNASDERGIDVVRHKIKEFARTAPIG---DAPFKIIFLDEADALTPDA 119
Query: 158 QFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEG 217
Q ALRR +E Y+K RF L CN V++II +QSRC F+F P+ P + +RL + E EG
Sbjct: 120 QAALRRTMEMYSKICRFILSCNYVSRIIEPIQSRCAVFKFRPVPPEAMRKRLLEICENEG 179
Query: 218 LDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWL 277
+ +TE GL AL+ + NGD RKA+N LQ + + EA+Y T P+++ +
Sbjct: 180 VKITEDGLEALIYVSNGDFRKAINALQGAAALGKVVDAEAIYQITATARPEELANLLETA 239
Query: 278 LNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSF 337
L F ++ + ++ + G++ D+V ++ + M ++V L++ L +I++RL+
Sbjct: 240 LEGKFMEARSILDKLMIEYGMSGEDVVSQLFREILSSGMDEKMKVLLIDKLGEIDFRLTE 299
Query: 338 GCNDKLQLGSIISTFT 353
G ++++QL + ++ +
Sbjct: 300 GAHERIQLDAYLAYLS 315
>gi|396080875|gb|AFN82495.1| DNA replication factor C small subunit [Encephalitozoon romaleae
SJ-2008]
Length = 308
Score = 244 bits (622), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 129/315 (40%), Positives = 195/315 (61%), Gaps = 14/315 (4%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PW EKYRP +L ++ +++++ ++ + ++P++L YGPPGTGKT++I A+AR L
Sbjct: 4 PWTEKYRPGTLLEMVGNKEVIASLQSILEAGKIPNMLFYGPPGTGKTTSIRAIARSLP-- 61
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFAL 161
+ +LELNASD+RGI VR+ I+DFAST S +KLV+LDEAD M++DAQ AL
Sbjct: 62 --RSCVLELNASDERGIATVRETIKDFASTYS------KMMKLVILDEADMMSRDAQNAL 113
Query: 162 RRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVT 221
RR+IE ++ NTRF LI N KIIP + SRCT+FRF P+E R+K + EG+ T
Sbjct: 114 RRIIEDFSANTRFCLIANHSRKIIPPILSRCTKFRFGPIESTE--SRIKEICRKEGIKYT 171
Query: 222 EGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNES 281
E G+AA+ ++ GDMRKA+N +Q ++ I E V+ G + E++ L N S
Sbjct: 172 EDGIAAVSKVSEGDMRKAVNDVQGISLSLGLIDERNVHKFNGIAPAQIYEEVFMDLGNMS 231
Query: 282 FADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCND 341
+ RI +++ G+ ++ + K KM + + +++ +L+DIE R S GCN+
Sbjct: 232 MVELRARIEDLRYEYGIDCDALIDNLGGIARKSKMRN--KTKILKELSDIERRRSIGCNE 289
Query: 342 KLQLGSIISTFTQAR 356
KLQL ++IS F R
Sbjct: 290 KLQLDAVISVFILNR 304
>gi|70606693|ref|YP_255563.1| replication factor C small subunit [Sulfolobus acidocaldarius DSM
639]
gi|449066916|ref|YP_007433998.1| replication factor C small subunit [Sulfolobus acidocaldarius N8]
gi|449069188|ref|YP_007436269.1| replication factor C small subunit [Sulfolobus acidocaldarius
Ron12/I]
gi|73914011|sp|Q4JAB0.1|RFCS_SULAC RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|68567341|gb|AAY80270.1| replication factor C [Sulfolobus acidocaldarius DSM 639]
gi|449035424|gb|AGE70850.1| replication factor C small subunit [Sulfolobus acidocaldarius N8]
gi|449037696|gb|AGE73121.1| replication factor C small subunit [Sulfolobus acidocaldarius
Ron12/I]
Length = 325
Score = 243 bits (620), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 124/310 (40%), Positives = 194/310 (62%), Gaps = 6/310 (1%)
Query: 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 102
W EKYRP+SL ++ ++IV+ + + E +PHLL GPPGTGKT+ LA+ R LYG
Sbjct: 7 WAEKYRPKSLDEIVNQKEIVERLKKFVKEKNMPHLLFAGPPGTGKTTAALALVRDLYGNN 66
Query: 103 YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALR 162
Y LELNASD+RGIDV+R ++++FA T + + K++LLDEAD MT DAQ ALR
Sbjct: 67 YRQYFLELNASDERGIDVIRNKVKEFARTVASN---NVPFKVILLDEADNMTADAQQALR 123
Query: 163 RVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTE 222
R +E YT+ TRF L CN ++KII +QSR FRF PL+ V RL + + E ++
Sbjct: 124 RTMELYTETTRFILACNYLSKIIEPIQSRTALFRFYPLKKEDVVNRLIQIAKNEKVEFDP 183
Query: 223 GGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESF 282
G+ + + GDMRKA+N++Q+ A +IT E VY G PK+I ++ + L+ F
Sbjct: 184 KGIETIFDITQGDMRKAINVIQAAS-AYGKITVETVYKVLGLAQPKEIREMLHLALSGKF 242
Query: 283 ADSFKRISEMKMRKGLALVDIVREV--TMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCN 340
+ ++ E+ + GL+ DI+++V + +I +P D++V L++ ++E+R+ G +
Sbjct: 243 LQARDKLRELLINYGLSGEDIIKQVHKELTGNEISIPDDLKVILVDYAGEVEFRIMEGAD 302
Query: 341 DKLQLGSIIS 350
D++QL + ++
Sbjct: 303 DEIQLSAFLA 312
>gi|302348723|ref|YP_003816361.1| Replication factor C small subunit [Acidilobus saccharovorans
345-15]
gi|302329135|gb|ADL19330.1| Replication factor C small subunit [Acidilobus saccharovorans
345-15]
Length = 329
Score = 243 bits (620), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 128/322 (39%), Positives = 196/322 (60%), Gaps = 6/322 (1%)
Query: 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 102
W EKYRP+SL ++ ++IV+ + + +E +PHLL GPPGTGKT+ A+A LYG
Sbjct: 10 WTEKYRPRSLKEIVNQKEIVERLSKFVAEKNMPHLLFAGPPGTGKTTAAHALAHDLYGDN 69
Query: 103 YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALR 162
Y +LELNASD+RGID +R+++++FA +++ K+VLLDEAD MT DAQ ALR
Sbjct: 70 YTQYMLELNASDERGIDTIREKVKEFARSKT---PPDIPFKIVLLDEADNMTADAQQALR 126
Query: 163 RVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTE 222
R++E Y+ NTRF L N +KII +QSRC FRF PL V RL+++ E E + E
Sbjct: 127 RLMELYSANTRFILAANFPSKIIDPIQSRCAFFRFTPLGKDDVVGRLRYIAEKENVKYDE 186
Query: 223 GGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESF 282
L A+ + GDMRKA+NILQ T + ++ ++VY G PKDI ++ L F
Sbjct: 187 DALEAIYDISEGDMRKAINILQ-TAASLGKVDVDSVYKVVGMARPKDIREMVEEALKGDF 245
Query: 283 ADSFKRISEMKMRKGLALVDIVREV--TMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCN 340
+ + + ++ + GL+ D+VR++ +F +K+P ++RV + + L +I YR+ G +
Sbjct: 246 TGARELLRKVMIEYGLSGEDVVRQIHRELFSNDLKIPEELRVMIADYLGEIHYRIVEGSD 305
Query: 341 DKLQLGSIISTFTQARSAIVAA 362
D +QL + ++ + AA
Sbjct: 306 DDIQLSAFLAWLAMMSKRVGAA 327
>gi|448467531|ref|ZP_21599543.1| replication factor C small subunit [Halorubrum kocurii JCM 14978]
gi|445812407|gb|EMA62401.1| replication factor C small subunit [Halorubrum kocurii JCM 14978]
Length = 327
Score = 243 bits (620), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 122/303 (40%), Positives = 185/303 (61%), Gaps = 6/303 (1%)
Query: 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA- 101
W+EKYRPQSL D+ +IV+ + ++ +PHLL GP G GKT+ A+AR++YG
Sbjct: 18 WIEKYRPQSLDDIHGQEEIVERLQSYIEQDDIPHLLFSGPAGVGKTTASTAIARQVYGDD 77
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFAL 161
+ LELNASD RGIDVVR +I+ FA + SFG ++V LDEAD++T DAQ AL
Sbjct: 78 NWRGNFLELNASDQRGIDVVRDRIKGFARS---SFG--GDFRIVFLDEADSLTDDAQSAL 132
Query: 162 RRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVT 221
RR +E+++ NTRF L CN +KII +QSRC FRF+PL V + + + AEG++VT
Sbjct: 133 RRTMEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLSDAAVAAQTREIAAAEGIEVT 192
Query: 222 EGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNES 281
+ G+ ALV +GDMR+A+N LQ+ + EEAVY T P++IE + L+
Sbjct: 193 DAGVDALVYAADGDMRRAINSLQAAATTGDVVDEEAVYAITATARPEEIESMVTNALDGD 252
Query: 282 FADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCND 341
F + + ++ G+A D++ ++ V++ + V LM + + +YR++ G N+
Sbjct: 253 FTRARATLDQLLTETGMAGGDVIDQLHRSVWEFDLSEREAVALMERIGEADYRIAEGANE 312
Query: 342 KLQ 344
++Q
Sbjct: 313 QVQ 315
>gi|11499642|ref|NP_070884.1| replication factor C small subunit [Archaeoglobus fulgidus DSM
4304]
gi|42559325|sp|O28219.1|RFCS_ARCFU RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit;
AltName: Full=afRFC small subunit; Short=afRFCsm
gi|110590966|pdb|2CHQ|A Chain A, Replication Factor C Adpnp Complex
gi|110590967|pdb|2CHQ|B Chain B, Replication Factor C Adpnp Complex
gi|110590968|pdb|2CHQ|C Chain C, Replication Factor C Adpnp Complex
gi|110590969|pdb|2CHV|A Chain A, Replication Factor C Adpnp Complex
gi|110590970|pdb|2CHV|B Chain B, Replication Factor C Adpnp Complex
gi|110590971|pdb|2CHV|C Chain C, Replication Factor C Adpnp Complex
gi|110590972|pdb|2CHV|D Chain D, Replication Factor C Adpnp Complex
gi|110590973|pdb|2CHV|E Chain E, Replication Factor C Adpnp Complex
gi|110590974|pdb|2CHV|F Chain F, Replication Factor C Adpnp Complex
gi|2648471|gb|AAB89191.1| activator 1, replication factor C, 35 KD subunit [Archaeoglobus
fulgidus DSM 4304]
Length = 319
Score = 243 bits (620), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 115/311 (36%), Positives = 193/311 (62%), Gaps = 3/311 (0%)
Query: 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 102
WVEKYRP++L +V +++ + +PHLL GPPGTGKT+T +A+AR L+G
Sbjct: 7 WVEKYRPRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGEN 66
Query: 103 YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALR 162
+ + +E+NASD+RGIDVVR +I++FA T A K++ LDEADA+T DAQ ALR
Sbjct: 67 WRDNFIEMNASDERGIDVVRHKIKEFARTAPIG---GAPFKIIFLDEADALTADAQAALR 123
Query: 163 RVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTE 222
R +E Y+K+ RF L CN V++II +QSRC FRF P+ + +RL + E EG+ +TE
Sbjct: 124 RTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEKEGVKITE 183
Query: 223 GGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESF 282
GL AL+ + GD RKA+N LQ + + + +Y T P+++ ++ L +F
Sbjct: 184 DGLEALIYISGGDFRKAINALQGAAAIGEVVDADTIYQITATARPEEMTELIQTALKGNF 243
Query: 283 ADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDK 342
++ + + + + G++ DIV ++ + + + ++V+L++ L ++++RL+ G N++
Sbjct: 244 MEARELLDRLMVEYGMSGEDIVAQLFREIISMPIKDSLKVQLIDKLGEVDFRLTEGANER 303
Query: 343 LQLGSIISTFT 353
+QL + ++ +
Sbjct: 304 IQLDAYLAYLS 314
>gi|289581577|ref|YP_003480043.1| replication factor C [Natrialba magadii ATCC 43099]
gi|448283016|ref|ZP_21474295.1| replication factor C small subunit [Natrialba magadii ATCC 43099]
gi|289531130|gb|ADD05481.1| Replication factor C [Natrialba magadii ATCC 43099]
gi|445574724|gb|ELY29212.1| replication factor C small subunit [Natrialba magadii ATCC 43099]
Length = 341
Score = 243 bits (620), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 116/310 (37%), Positives = 192/310 (61%), Gaps = 4/310 (1%)
Query: 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 102
W+EKYRP+ L ++ H +IV + R ++ LPHL+ GP GTGKT+ A+AR++Y
Sbjct: 31 WIEKYRPEYLDEIKGHENIVPRLQRYVEQDDLPHLMFAGPAGTGKTTAAQAIAREVYDDD 90
Query: 103 YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALR 162
+ LELNASD RGIDVVR +I+DFA SFG +++ LDEADA+T DAQ ALR
Sbjct: 91 WRENFLELNASDQRGIDVVRDRIKDFARA---SFG-GYDHRIIFLDEADALTSDAQSALR 146
Query: 163 RVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTE 222
R +E+++ NTRF L CN ++II +QSRC FRF L + +++ + + ++VT+
Sbjct: 147 RTMEQFSNNTRFILSCNYSSQIIDPIQSRCAVFRFTQLTETAIEAQVREIAADQDIEVTD 206
Query: 223 GGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESF 282
G+ ALV +GDMRKA+N LQ+ + + + EE V+ T P+++E++ + F
Sbjct: 207 DGVDALVYAADGDMRKAINALQAAAVMGETVDEETVFAITATARPEEVEEMVEQAIAGDF 266
Query: 283 ADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDK 342
+ + ++ +GLA D++ ++ ++ +P VRL+ L ++++R++ G N++
Sbjct: 267 TAARASLEDLLTDRGLAGGDVIDQLHRSAWEFDIPEQETVRLLERLGEVDFRITEGANER 326
Query: 343 LQLGSIISTF 352
LQL +++++
Sbjct: 327 LQLEAMLASL 336
>gi|448434836|ref|ZP_21586534.1| replication factor C small subunit [Halorubrum tebenquichense DSM
14210]
gi|445684459|gb|ELZ36835.1| replication factor C small subunit [Halorubrum tebenquichense DSM
14210]
Length = 327
Score = 243 bits (619), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 123/303 (40%), Positives = 187/303 (61%), Gaps = 6/303 (1%)
Query: 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA- 101
W+EKYRPQ+L D+ +IV+ + +++ +PHLL GP G GKT+ A+AR++YG
Sbjct: 18 WIEKYRPQTLDDIHGQEEIVERLQSYIAQDDVPHLLFSGPAGIGKTTAATAIAREIYGED 77
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFAL 161
+ LELNASD RGIDVVR +I+ FA + SFG ++V LDEAD++T DAQ AL
Sbjct: 78 NWRGNFLELNASDQRGIDVVRDRIKGFARS---SFG--GDFRIVFLDEADSLTDDAQSAL 132
Query: 162 RRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVT 221
RR +E+++ NTRF L CN +KII +QSRC FRF+PL V ++ + AE ++VT
Sbjct: 133 RRTMEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLSDEAVGGMVREIAAAEDIEVT 192
Query: 222 EGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNES 281
+ G+ ALV +GDMR+A+N LQ+ + EEAVY T P++IE + LN
Sbjct: 193 DEGIDALVYAADGDMRRAINSLQAAATTGDVVDEEAVYAITATARPEEIESMVTDALNGD 252
Query: 282 FADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCND 341
FA + + + G+A D++ ++ V++ ++ VRLM + + +YR++ G N+
Sbjct: 253 FARARSTLDTLLTETGMAGGDVIDQLHRSVWEFELSEREAVRLMERIGEADYRIAEGANE 312
Query: 342 KLQ 344
++Q
Sbjct: 313 QVQ 315
>gi|432330756|ref|YP_007248899.1| DNA polymerase III, gamma/tau subunit [Methanoregula formicicum
SMSP]
gi|432137465|gb|AGB02392.1| DNA polymerase III, gamma/tau subunit [Methanoregula formicicum
SMSP]
Length = 322
Score = 243 bits (619), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 121/316 (38%), Positives = 190/316 (60%), Gaps = 3/316 (0%)
Query: 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 102
W+EKYRPQ LAD+ +IV+ + LPHLL G G GKT+ + +AR+ +
Sbjct: 8 WIEKYRPQKLADIVGQDEIVERLSSYVRSGNLPHLLFTGSAGVGKTTAAVTLAREFFRDS 67
Query: 103 YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALR 162
+ ELNASD+RGIDVVR QI+ FA T +A+ K++ LDEADA+T DAQ ALR
Sbjct: 68 WQMNFRELNASDERGIDVVRNQIKQFARTTPLG---EATFKILFLDEADALTTDAQAALR 124
Query: 163 RVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTE 222
R +E Y + RF L CN +KII +QSRC +RF PL P V E ++ + EGL +T+
Sbjct: 125 RTMESYAQTCRFILSCNYSSKIIDPIQSRCAIYRFKPLGPEAVREEVRRIASREGLTITD 184
Query: 223 GGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESF 282
G + A+V + GDMRKA+N LQ + + I E+ VY T P++I+++ L F
Sbjct: 185 GAMDAIVYIAQGDMRKAINALQGAAIINPAIDEKRVYSITSTARPEEIDELLSLSLTGDF 244
Query: 283 ADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDK 342
+ ++++ +G+A +++ ++ + K +MP +++VRL++ L + ++RLS G N
Sbjct: 245 DGAESLLAQLLHERGIAPNELINQMYRALLKREMPRELKVRLIDHLGESDFRLSEGANSD 304
Query: 343 LQLGSIISTFTQARSA 358
+Q+ ++++ F + A
Sbjct: 305 IQMEALVARFVLSSQA 320
>gi|448531306|ref|ZP_21620993.1| replication factor C small subunit [Halorubrum hochstenium ATCC
700873]
gi|445707263|gb|ELZ59121.1| replication factor C small subunit [Halorubrum hochstenium ATCC
700873]
Length = 327
Score = 242 bits (618), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 123/303 (40%), Positives = 187/303 (61%), Gaps = 6/303 (1%)
Query: 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA- 101
W+EKYRPQ+L D+ +IV+ + +++ +PHLL GP G GKT+ A+AR++YG
Sbjct: 18 WIEKYRPQTLDDIHGQSEIVERLQSYIAQDDVPHLLFSGPAGIGKTTAATAIAREIYGED 77
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFAL 161
+ LELNASD RGIDVVR +I+ FA + SFG ++V LDEAD++T DAQ AL
Sbjct: 78 NWRGNFLELNASDQRGIDVVRDRIKGFARS---SFG--GDFRIVFLDEADSLTDDAQSAL 132
Query: 162 RRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVT 221
RR +E+++ NTRF L CN +KII +QSRC FRF+PL V ++ + AE ++VT
Sbjct: 133 RRTMEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLSDEAVGGMVREIAAAEDIEVT 192
Query: 222 EGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNES 281
+ G+ ALV +GDMR+A+N LQ+ + EEAVY T P++IE + LN
Sbjct: 193 DEGIDALVYAADGDMRRAINSLQAAATTGDVVDEEAVYAITATARPEEIESMVTDALNGD 252
Query: 282 FADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCND 341
FA + + + G+A D++ ++ V++ ++ VRLM + + +YR++ G N+
Sbjct: 253 FARARSTLDTLLTETGMAGGDVIDQLHRSVWEFELSEREAVRLMERIGEADYRIAEGANE 312
Query: 342 KLQ 344
++Q
Sbjct: 313 QVQ 315
>gi|345006147|ref|YP_004809000.1| replication factor C small subunit [halophilic archaeon DL31]
gi|344321773|gb|AEN06627.1| Replication factor C small subunit [halophilic archaeon DL31]
Length = 327
Score = 242 bits (618), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 119/302 (39%), Positives = 182/302 (60%), Gaps = 4/302 (1%)
Query: 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 102
W+EKYRPQ+L D+ + ++ + + LPHLL GP G GKTS+ A+AR++YG
Sbjct: 16 WIEKYRPQTLEDIHGQEETIERLQSYIAGGELPHLLFSGPAGIGKTSSATAIAREIYGDD 75
Query: 103 YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALR 162
+ LELNASD+RGIDVVR +I+ FA + +FG +++ LDEAD++T DAQ ALR
Sbjct: 76 WRGNFLELNASDERGIDVVRDRIKSFARS---AFGGH-DYRIIFLDEADSLTSDAQSALR 131
Query: 163 RVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTE 222
R +E+++ NTRF L CN +KII +QSRC FRF+PL + +L + E E ++VT+
Sbjct: 132 RTMEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLSDEAIANQLGEIAEIEAIEVTD 191
Query: 223 GGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESF 282
G ALV NGDMR+ +N LQ+ + EAVY T P+DIE++ ++ F
Sbjct: 192 EGFDALVYAANGDMRRGINSLQAAATTGDVVDAEAVYAVTATARPEDIEEMVAAAVDGDF 251
Query: 283 ADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDK 342
+ + + G+A DI+ ++ ++ ++ VRLM L + +YR++ G N++
Sbjct: 252 PKARATLDTLLTDVGMAGGDIIDQLHRSAWEFELSDRAVVRLMERLGEADYRIAEGANEQ 311
Query: 343 LQ 344
+Q
Sbjct: 312 VQ 313
>gi|154277188|ref|XP_001539435.1| activator 1 subunit 3 [Ajellomyces capsulatus NAm1]
gi|150413020|gb|EDN08403.1| activator 1 subunit 3 [Ajellomyces capsulatus NAm1]
Length = 366
Score = 242 bits (617), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 140/303 (46%), Positives = 189/303 (62%), Gaps = 19/303 (6%)
Query: 44 VEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ- 102
VEKYRP +L D + +D + L + RLPHLLLYGPPGTGKTSTILA+AR++YG +
Sbjct: 74 VEKYRPNTLEDAVPNAPNIDWTNPLFVQ-RLPHLLLYGPPGTGKTSTILALARRIYGVKN 132
Query: 103 YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALR 162
M+LELNASDDRGIDV I F + S S + KL++LDEADAMT AQ ALR
Sbjct: 133 MRQMVLELNASDDRGIDVF--VIHPFRYSLSNSESTLGAFKLIILDEADAMTATAQMALR 190
Query: 163 RVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTE 222
R++EKYT NTRF +I N +K+ PAL SRCTRFRF+PL+ + + V+E E + +
Sbjct: 191 RIMEKYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKEEDIRVLVDQVVEKERVRIQP 250
Query: 223 GGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESF 282
+ +LV+L GDMR+ALN+LQ+ H ++ P P DI+ I LL S
Sbjct: 251 EAIDSLVQLSKGDMRRALNVLQACHAST--------------PHPSDIKTIITTLLTTSD 296
Query: 283 ADS-FKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCND 341
S I +K KGLAL DI+ ++ + +I++P+ R+ M LADIE+RL+ G +
Sbjct: 297 VTSCLNTIKTLKSTKGLALADILTSISTELQRIEVPAATRIVWMEGLADIEWRLAAGGGE 356
Query: 342 KLQ 344
+Q
Sbjct: 357 MVQ 359
>gi|322787624|gb|EFZ13664.1| hypothetical protein SINV_05560 [Solenopsis invicta]
Length = 204
Score = 242 bits (617), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 121/207 (58%), Positives = 147/207 (71%), Gaps = 3/207 (1%)
Query: 107 ILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIE 166
+LELNASDDRGI +VR QI FAST + K+ KL++LDEADAMT DAQ ALRR+IE
Sbjct: 1 VLELNASDDRGIGIVRGQILSFASTGTM---YKSKFKLIILDEADAMTIDAQNALRRIIE 57
Query: 167 KYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLA 226
KYT N RF +ICN ++KIIPALQSRCTRFRF PL + RL HVIEAE L VTE G
Sbjct: 58 KYTDNVRFCIICNYLSKIIPALQSRCTRFRFLPLAAEQIMPRLNHVIEAEKLQVTENGKE 117
Query: 227 ALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSF 286
AL+ L GDMRK +++LQST A + EE VY C G+PLP DI I WLLN+S+ +
Sbjct: 118 ALMTLSGGDMRKVISVLQSTWFAYGAVNEENVYNCVGHPLPSDINSIVNWLLNDSYDTCY 177
Query: 287 KRISEMKMRKGLALVDIVREVTMFVFK 313
K+I ++K+ KGLAL DI+ E+ V K
Sbjct: 178 KKIQQLKLNKGLALQDILTEIHSCVVK 204
>gi|448354529|ref|ZP_21543285.1| replication factor C small subunit [Natrialba hulunbeirensis JCM
10989]
gi|445637417|gb|ELY90567.1| replication factor C small subunit [Natrialba hulunbeirensis JCM
10989]
Length = 339
Score = 242 bits (617), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 116/310 (37%), Positives = 192/310 (61%), Gaps = 4/310 (1%)
Query: 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 102
W+EKYRP+ L ++ H +IV + R ++ LPHL+ GP GTGKT+ A+AR++Y
Sbjct: 29 WIEKYRPEYLDEIKGHENIVPRLQRYVEQDDLPHLMFAGPAGTGKTTAAQAIAREVYDDD 88
Query: 103 YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALR 162
+ LELNASD RGIDVVR +I+DFA SFG +++ LDEADA+T DAQ ALR
Sbjct: 89 WRENFLELNASDQRGIDVVRDRIKDFARA---SFG-GYDHRIIFLDEADALTSDAQSALR 144
Query: 163 RVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTE 222
R +E+++ NTRF L CN ++II +QSRC FRF L + +++ + + ++VT+
Sbjct: 145 RTMEQFSNNTRFILSCNYSSQIIDPIQSRCAVFRFTQLTETAIEAQVREIAADQDIEVTD 204
Query: 223 GGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESF 282
G+ ALV +GDMRKA+N LQ+ + + + EE V+ T P+++E++ + F
Sbjct: 205 DGVDALVYAADGDMRKAINALQAAAVMGETVDEETVFAITATARPEEVEEMVDQAIAGDF 264
Query: 283 ADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDK 342
+ + ++ +GLA D++ ++ ++ +P VRL+ L ++++R++ G N++
Sbjct: 265 TAARASLEDLLTDRGLAGGDVIDQLHRSAWEFDIPEKETVRLLERLGEVDFRITEGANER 324
Query: 343 LQLGSIISTF 352
LQL +++++
Sbjct: 325 LQLEAMLASL 334
>gi|448445134|ref|ZP_21590189.1| replication factor C small subunit [Halorubrum saccharovorum DSM
1137]
gi|445685440|gb|ELZ37794.1| replication factor C small subunit [Halorubrum saccharovorum DSM
1137]
Length = 328
Score = 241 bits (615), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 122/303 (40%), Positives = 184/303 (60%), Gaps = 6/303 (1%)
Query: 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA- 101
W+EKYRPQSL D+ +IV+ + ++ +PHLL GP G GKT+ A+AR++YG
Sbjct: 18 WIEKYRPQSLDDIHGQEEIVERLQSYIEQDDIPHLLFSGPAGVGKTTAATAIARQVYGED 77
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFAL 161
+ LELNASD RGIDVVR +I+ FA + SFG ++V LDEAD++T DAQ AL
Sbjct: 78 NWRGNFLELNASDQRGIDVVRDRIKGFARS---SFG--GDFRIVFLDEADSLTDDAQSAL 132
Query: 162 RRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVT 221
RR +E+++ NTRF L CN +KII +QSRC FRF+PL V + + + AEG++VT
Sbjct: 133 RRTMEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLSDEAVAAQTREIAAAEGIEVT 192
Query: 222 EGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNES 281
+ G+ ALV +GDMR+A+N LQ+ + EEAVY T P++IE + L
Sbjct: 193 DEGVDALVYAADGDMRRAINSLQAAATTGDVVDEEAVYAITATARPEEIESMVTNALEGD 252
Query: 282 FADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCND 341
F+ + + + G+A D++ ++ V++ + V LM + + +YR++ G N+
Sbjct: 253 FSRARATLDTLLTETGMAGGDVIDQLHRSVWEFDLSEREAVALMERIGEADYRIAEGANE 312
Query: 342 KLQ 344
++Q
Sbjct: 313 QVQ 315
>gi|448498600|ref|ZP_21610886.1| replication factor C small subunit [Halorubrum coriense DSM 10284]
gi|445698349|gb|ELZ50394.1| replication factor C small subunit [Halorubrum coriense DSM 10284]
Length = 327
Score = 240 bits (613), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 122/303 (40%), Positives = 187/303 (61%), Gaps = 6/303 (1%)
Query: 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA- 101
W+EKYRPQ+L DV +IV+ + +++ +PHLL GP G GKT+ A+AR++YG
Sbjct: 18 WIEKYRPQTLDDVHGQEEIVERLQSYIAQDDVPHLLFSGPAGIGKTTAATAIAREIYGED 77
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFAL 161
+ LELNASD RGIDVVR +I+ FA + SFG ++V LDEAD++T DAQ AL
Sbjct: 78 NWRGNFLELNASDQRGIDVVRDRIKGFARS---SFG--GDFRIVFLDEADSLTDDAQSAL 132
Query: 162 RRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVT 221
RR +E+++ NTRF L CN +KII +QSRC FRF+PL V+ ++ + AE ++VT
Sbjct: 133 RRTMEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLSDEAVSGMVREIAAAEEIEVT 192
Query: 222 EGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNES 281
+ G+ ALV +GDMR+A+N LQ+ + E+AVY T P++IE + L+
Sbjct: 193 DAGVDALVYAADGDMRRAINSLQAAATTGDVVDEKAVYAITATARPEEIESMVTDALSGD 252
Query: 282 FADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCND 341
FA + + + G+A D++ ++ V++ + VRLM + + +YR++ G N+
Sbjct: 253 FARARSTLDTLLTETGMAGGDVIDQLHRSVWEFDLSEREAVRLMERIGEADYRIAEGANE 312
Query: 342 KLQ 344
++Q
Sbjct: 313 QVQ 315
>gi|148643236|ref|YP_001273749.1| replication factor C small subunit [Methanobrevibacter smithii ATCC
35061]
gi|158513780|sp|A5UMF3.1|RFCS_METS3 RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|148552253|gb|ABQ87381.1| replication factor C, small subunit, RfcS [Methanobrevibacter
smithii ATCC 35061]
Length = 315
Score = 240 bits (613), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 120/317 (37%), Positives = 189/317 (59%), Gaps = 8/317 (2%)
Query: 40 ASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLY 99
+ PWVEKYRPQ+L D+ + IV+ + + E +P+L+ GP G GKT+T +A+ + +
Sbjct: 2 SGPWVEKYRPQNLDDIIGQKQIVNRLQKYVGEESMPNLMFTGPAGVGKTTTAIALVKAIL 61
Query: 100 GAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQF 159
G + LELNASD RGID VR I++F + V A +++ LDE D MTKDAQ
Sbjct: 62 GEYWRQNFLELNASDARGIDTVRNDIKNFCRLKP----VGAPFRIIFLDEVDNMTKDAQH 117
Query: 160 ALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLD 219
ALRR +E YTK F L CN +KII +QSRC FRF P++ + RLK++ +E +
Sbjct: 118 ALRREMEMYTKTASFILSCNYSSKIIDPIQSRCAIFRFGPIKGEEIANRLKYICTSERFE 177
Query: 220 VTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLN 279
T+GG+ A+ GDMRKA+N+LQ+ +Q+ E+AVY P+D+ + L+
Sbjct: 178 YTDGGIEAIEYFAEGDMRKAVNVLQAAASEGKQVDEDAVYEVVSKAKPQDVHNLITKALS 237
Query: 280 ESFADSFKRISEMKMRKGLALVDIV----REVTMFVFKIKMPSDVRVRLMNDLADIEYRL 335
F + + E + +G + D+V ++V+ VF+ KM +D+ + L+ +AD ++R+
Sbjct: 238 GDFMGARNLLRETMVLQGTSGEDMVSQIYQDVSKRVFEGKMEADIYIDLIEAIADCDFRI 297
Query: 336 SFGCNDKLQLGSIISTF 352
G N ++QL ++++ F
Sbjct: 298 REGANPRIQLEALLTQF 314
>gi|222478820|ref|YP_002565057.1| replication factor C small subunit [Halorubrum lacusprofundi ATCC
49239]
gi|222451722|gb|ACM55987.1| Replication factor C [Halorubrum lacusprofundi ATCC 49239]
Length = 327
Score = 240 bits (613), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 122/303 (40%), Positives = 185/303 (61%), Gaps = 6/303 (1%)
Query: 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA- 101
W+EKYRPQSL D+ IV+ + ++ +PHLL GP GTGKT+ A+AR++YG
Sbjct: 18 WIEKYRPQSLDDIHGQEAIVERLQSYIEQDDIPHLLFGGPAGTGKTTAATAIARQVYGDD 77
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFAL 161
+ LELNASD RGIDVVR +I+ FA + SFG ++V LDEAD++T +AQ AL
Sbjct: 78 NWRGNFLELNASDQRGIDVVRDRIKGFARS---SFG--GDFRIVFLDEADSLTDEAQAAL 132
Query: 162 RRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVT 221
RR +E+++ NTRF L CN +KII +QSRC FRF+PL V + + + AEG++VT
Sbjct: 133 RRTMEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLSDAAVAAQTREIAAAEGIEVT 192
Query: 222 EGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNES 281
+ G+ ALV +GDMR+A+N LQ+ + + EEAVY T P++IE + L+
Sbjct: 193 DEGVDALVYAADGDMRRAINSLQAAATTGEIVDEEAVYAITATARPEEIESMVTNALHGD 252
Query: 282 FADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCND 341
F + + + G+A D++ ++ V++ + V LM + + +YR++ G N+
Sbjct: 253 FTRARATLDTLLTETGMAGGDVIDQLHRSVWEFDLSEREAVALMERIGEADYRIAEGANE 312
Query: 342 KLQ 344
++Q
Sbjct: 313 QVQ 315
>gi|330834115|ref|YP_004408843.1| replication factor C small subunit [Metallosphaera cuprina Ar-4]
gi|329566254|gb|AEB94359.1| replication factor C small subunit [Metallosphaera cuprina Ar-4]
Length = 325
Score = 240 bits (612), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 126/310 (40%), Positives = 193/310 (62%), Gaps = 6/310 (1%)
Query: 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 102
W EKYRP++L D+ +DIVD + R E +PHLL GPPGTGKT++ LA+ LYG
Sbjct: 6 WAEKYRPRTLDDIVNQKDIVDRLKRFVKERNMPHLLFAGPPGTGKTTSALALVHDLYGEN 65
Query: 103 YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALR 162
Y LELNASD+ GI+V+R +++DFA T + K VLLDEAD MT DAQ ALR
Sbjct: 66 YDQFFLELNASDENGINVIRTKVKDFARTVTPG---NVPFKTVLLDEADNMTSDAQQALR 122
Query: 163 RVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTE 222
R +E YT++TRF L CN ++KII +QSR FRF PL+ V RL+++++ E +
Sbjct: 123 RTMELYTESTRFILACNYLSKIIDPIQSRTALFRFYPLKKEDVILRLENILKEEKVQYDV 182
Query: 223 GGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESF 282
L + + GDMRKA+N+LQ+ A ++T ++V G PK+I ++ L F
Sbjct: 183 KSLEVVYDVTGGDMRKAINVLQAA-AAYGKVTTDSVLKVLGLAQPKEIREMVKLALQGKF 241
Query: 283 ADSFKRISEMKMRKGLALVDIVREVTMFVF--KIKMPSDVRVRLMNDLADIEYRLSFGCN 340
DS ++ + + GL+ DIV++V +F + ++P ++RV + + L ++E+R+ G +
Sbjct: 242 LDSRSKLMSLIIDYGLSGEDIVKQVHRDIFSNEYQIPEELRVLMSDYLGEVEFRIIEGAD 301
Query: 341 DKLQLGSIIS 350
D++QL ++++
Sbjct: 302 DEIQLSAMLA 311
>gi|76801102|ref|YP_326110.1| replication factor C small subunit [Natronomonas pharaonis DSM
2160]
gi|83288436|sp|Q3ITJ2.1|RFCS_NATPD RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|76556967|emb|CAI48541.1| replication factor C small subunit [Natronomonas pharaonis DSM
2160]
Length = 325
Score = 239 bits (610), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 118/298 (39%), Positives = 185/298 (62%), Gaps = 4/298 (1%)
Query: 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 102
W+EKYRPQ+L D+ H I + + + ++N LPHLL GP G GKT+ A+A+++YG
Sbjct: 14 WIEKYRPQTLDDIVGHESITERLKQYIAQNDLPHLLFAGPAGVGKTTAATAIAKEVYGDD 73
Query: 103 YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALR 162
+ LELNASD RGIDVVR +I+ FA SFG +++ LDEADA+T DAQ ALR
Sbjct: 74 WRENFLELNASDQRGIDVVRDRIKSFARA---SFG-GYDHRIIFLDEADALTSDAQSALR 129
Query: 163 RVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTE 222
R +E+++ NTRF L CN ++II +QSRC FRF+PL V E+++ + + EG+++T+
Sbjct: 130 RTMEQFSDNTRFILSCNYSSQIIDPIQSRCAVFRFSPLGDAAVDEQIRIIADTEGIELTD 189
Query: 223 GGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESF 282
G+ ALV +GDMRKA+N LQ+ + + EEAVY T P++I ++ ++ F
Sbjct: 190 DGVDALVYAADGDMRKAINGLQAAAVMGGTVDEEAVYTITSTARPEEIREMVTEAMDGDF 249
Query: 283 ADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCN 340
+ ++ + G+A DI+ ++ V++ + V+LM + + +YR++ G +
Sbjct: 250 TAARSQLETLLTDVGIAGGDIIDQLHRSVWEFDLEEREAVQLMERIGEADYRITAGAS 307
>gi|359415519|ref|ZP_09207966.1| replication factor C small subunit [Candidatus Haloredivivus sp.
G17]
gi|358034122|gb|EHK02580.1| replication factor C small subunit [Candidatus Haloredivivus sp.
G17]
Length = 315
Score = 238 bits (607), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 109/308 (35%), Positives = 196/308 (63%), Gaps = 4/308 (1%)
Query: 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 102
W EK+RP +L++V +I + ++ E +PH+L GPPGTGKT+ +A+A+ LYG +
Sbjct: 5 WTEKHRPNTLSEVVGQNEITERLEAFVEEESIPHMLFSGPPGTGKTTCAVALAKDLYGDE 64
Query: 103 YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALR 162
+ +E NAS++RGIDVVR++I+DFA T++ + A K++ LDEAD++T DAQ ALR
Sbjct: 65 WKQNFMETNASEERGIDVVREKIKDFARTKA----INAEYKIIFLDEADSLTSDAQQALR 120
Query: 163 RVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTE 222
R +E+++ N RF + CN +KII +QSRC FRF LE V ++ + E+E ++E
Sbjct: 121 RTMEQFSDNCRFIMSCNYSSKIIDPIQSRCAVFRFNRLEEGDVKSYIQRLGESENFSISE 180
Query: 223 GGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESF 282
+ A++R+ +GD+R+ N+LQ+ +++ +I EE VY + + PK+I +I ++ F
Sbjct: 181 DAVEAVMRVSDGDLRRVTNVLQTAAISTDEIEEEDVYSVSASLKPKEITEILEKTISNQF 240
Query: 283 ADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDK 342
D+ ++S++ + +GL D+V + V+ + + ++ L+ L + E+R++ G +
Sbjct: 241 IDARDQLSDLMIERGLDGQDVVSSIHREVYNLDISDQQKLELIEALGEFEFRITEGASAD 300
Query: 343 LQLGSIIS 350
+Q+ ++++
Sbjct: 301 VQIEALLA 308
>gi|383319632|ref|YP_005380473.1| replication factor C small subunit [Methanocella conradii HZ254]
gi|379321002|gb|AFC99954.1| replication factor C small subunit [Methanocella conradii HZ254]
Length = 322
Score = 238 bits (607), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 117/310 (37%), Positives = 188/310 (60%), Gaps = 3/310 (0%)
Query: 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 102
W EKYRP++L DV IV + LPHLL GPPG GKT+ +A+A+ ++G
Sbjct: 7 WTEKYRPKTLDDVIGQEQIVRRLKSYVKSGNLPHLLFSGPPGVGKTACAVALAKDMFGDA 66
Query: 103 YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALR 162
+ N +ELNASD+RGI+VVR I++FA T +A K++ LDEADA+T DAQ ALR
Sbjct: 67 WQNNFIELNASDERGIEVVRNNIKNFARTSPLG---EARFKVIFLDEADALTADAQSALR 123
Query: 163 RVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTE 222
R +E+YT RF + CN +KII +QSRC +RF L P V ++ + + E + V+
Sbjct: 124 RTMERYTATCRFIISCNYSSKIIEPIQSRCAIYRFGLLGPKDVETMVRRIEKGEHIKVSP 183
Query: 223 GGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESF 282
GL AL+ + GDMR+A+N LQS ++ +T + V+ PK+IE + LN F
Sbjct: 184 DGLEALIYVARGDMRRAINALQSASTVTKHVTADVVFETMSIARPKEIEDMLKLALNGQF 243
Query: 283 ADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDK 342
D+ ++ ++ ++ GL+ D+V ++ +F + + V V L++ + + ++RL+ G N++
Sbjct: 244 MDARNKLDDLLIKYGLSGNDVVDQIYSAMFALGLDEGVLVDLVDRIGEADFRLTEGANER 303
Query: 343 LQLGSIISTF 352
+Q+ ++++ F
Sbjct: 304 IQVEALLAHF 313
>gi|304314452|ref|YP_003849599.1| replication factor C, small subunit [Methanothermobacter
marburgensis str. Marburg]
gi|302587911|gb|ADL58286.1| replication factor C, small subunit [Methanothermobacter
marburgensis str. Marburg]
Length = 317
Score = 238 bits (607), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 119/318 (37%), Positives = 188/318 (59%), Gaps = 8/318 (2%)
Query: 41 SPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYG 100
PWVEKYRPQ L D+ I+ + R E +P+L+ GP G GKT+T LA+AR++ G
Sbjct: 3 GPWVEKYRPQKLDDIVGQEHIIPRLKRYVEERSMPNLMFTGPAGVGKTTTALALAREILG 62
Query: 101 AQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFA 160
+ LELNASD RGID VR I++F + V A +++ LDE D MTKDAQ A
Sbjct: 63 EYWRQNFLELNASDARGIDTVRTSIKNFCRLKP----VGAPFRIIFLDEVDNMTKDAQHA 118
Query: 161 LRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDV 220
LRR +E YTK + F L CN +KII +QSRC FRF PL+ H+ RL+++ E EGL+
Sbjct: 119 LRREMEMYTKTSSFILSCNYSSKIIDPIQSRCAIFRFLPLKGRHIISRLEYIAEQEGLEY 178
Query: 221 TEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNE 280
L +V GD+RKA+NILQS ++ITE ++Y PKD+ ++ +L+
Sbjct: 179 EPQALDTVVYFAEGDLRKAINILQSAASLGEKITESSIYEVVSRARPKDVRKMIMTILDG 238
Query: 281 SFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVR----VRLMNDLADIEYRLS 336
F ++ + E+ + +G++ D+V ++ + ++ M + ++L+ + + ++R+
Sbjct: 239 KFMEARDMLREIMVLQGISGEDMVTQIYQELSRLAMEGSIEGERYIKLIEAVGEYDFRIR 298
Query: 337 FGCNDKLQLGSIISTFTQ 354
G N ++QL ++++ F +
Sbjct: 299 EGANPRIQLEALLARFLE 316
>gi|119872170|ref|YP_930177.1| replication factor C small subunit [Pyrobaculum islandicum DSM
4184]
gi|150415670|sp|A1RSA2.1|RFCS1_PYRIL RecName: Full=Replication factor C small subunit 1; Short=RFC small
subunit 1; AltName: Full=Clamp loader small subunit 1
gi|119673578|gb|ABL87834.1| replication factor C small subunit [Pyrobaculum islandicum DSM
4184]
Length = 329
Score = 238 bits (606), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 124/322 (38%), Positives = 193/322 (59%), Gaps = 5/322 (1%)
Query: 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 102
W EKYRP+S +V ++ + +PHLL YGPPGTGKT+ L +AR+LYG
Sbjct: 6 WFEKYRPRSFDEVVDLEEVKSRLREFVKSGNMPHLLFYGPPGTGKTTMALVLARELYGEY 65
Query: 103 YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALR 162
+ LELNASD+RGI+V+R+++++FA T KA KLV+LDEAD MT DAQ ALR
Sbjct: 66 WRENTLELNASDERGINVIRERVKEFARTAPVG---KAPFKLVILDEADNMTSDAQQALR 122
Query: 163 RVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHV-TERLKHVIEAEGLDVT 221
R++E Y +NTRF L+ N V++II + SRC FRF+P+ P H+ ERLK++ ++EG++V
Sbjct: 123 RIMEIYAQNTRFILLANYVSRIIDPIISRCAVFRFSPM-PRHLMAERLKYIAKSEGVEVK 181
Query: 222 EGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNES 281
E + + L GDMRKA+NILQ ++ + V P DI ++ L+
Sbjct: 182 EDAIDLIYELSEGDMRKAINILQVAAATNKIVDRNVVAAAAAAIRPTDIVELFNLALSGD 241
Query: 282 FADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCND 341
+ + +++ E+ KG+A VD +R + ++ + + + + LAD++YRL+ G ++
Sbjct: 242 YLKAREKMRELMYVKGVAGVDFIRAFQRELIRMSLDDETKAEVAELLADVDYRLTQGADE 301
Query: 342 KLQLGSIISTFTQARSAIVAAA 363
++QL ++ I AA+
Sbjct: 302 EIQLSYFLAKLGSIGKKIRAAS 323
>gi|385806402|ref|YP_005842800.1| replication factor C small subunit [Fervidicoccus fontis Kam940]
gi|383796265|gb|AFH43348.1| replication factor C small subunit [Fervidicoccus fontis Kam940]
Length = 326
Score = 238 bits (606), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 125/319 (39%), Positives = 196/319 (61%), Gaps = 6/319 (1%)
Query: 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 102
W EKYRP+SL ++ + + + + E PH+L GPPGTGKT+ LA A LYG
Sbjct: 12 WAEKYRPRSLDEIVDQEETIIRLKKFVKEKNAPHMLFAGPPGTGKTTAALAFAHDLYGKN 71
Query: 103 YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALR 162
Y +LELNASD+RGIDV+R +I++FA T S GV KL++LDE+D +T DAQ ALR
Sbjct: 72 YQQFVLELNASDERGIDVIRGKIKEFART-SVVGGV--PFKLIILDESDNLTSDAQQALR 128
Query: 163 RVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTE 222
R++E +T +RF LI N +KII +QSR FRF+PL+ V +RLK ++E E + E
Sbjct: 129 RMMENFTLTSRFILIANYPSKIIEPIQSRTALFRFSPLKKEDVIKRLKWILENESVSYEE 188
Query: 223 GGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESF 282
L A+ + GDMRKA+N+LQS A ++T + VY G PK+I ++ L+ F
Sbjct: 189 SALEAVFEISEGDMRKAINVLQSAS-AIGKVTVDTVYKVVGLAHPKEIREMLNLALSGDF 247
Query: 283 ADSFKRISEMKMRKGLALVDIVREVTMFVF--KIKMPSDVRVRLMNDLADIEYRLSFGCN 340
+ +R+ ++ M GL+ VD+++++ +F +I + ++++ + + +I +R++ G +
Sbjct: 248 NGARERLRKLMMDYGLSGVDVIKQIHKEIFSNEIDLSEEMKLMIADYTGEILFRITEGSD 307
Query: 341 DKLQLGSIISTFTQARSAI 359
D++QL S ++ R I
Sbjct: 308 DEIQLNSFLAWLVLLRKRI 326
>gi|333987924|ref|YP_004520531.1| replication factor C small subunit [Methanobacterium sp. SWAN-1]
gi|333826068|gb|AEG18730.1| Replication factor C small subunit [Methanobacterium sp. SWAN-1]
Length = 322
Score = 238 bits (606), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 122/317 (38%), Positives = 191/317 (60%), Gaps = 9/317 (2%)
Query: 41 SPWVEKYRPQSLADVAAHRDIVDTIDR-LTSENRLPHLLLYGPPGTGKTSTILAVARKLY 99
PWVEKYRPQ+L DV I++ + + + E +P+L+ GP G GKT+T +A+A+ +
Sbjct: 3 GPWVEKYRPQTLDDVVGQDHIINRLKKYIKEETSMPNLMFTGPAGVGKTTTAIALAKAVL 62
Query: 100 GAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQF 159
G + LELNASD RGID VR I++F ++ V A +++ LDE D MTKDAQ
Sbjct: 63 GEYWRQNFLELNASDARGIDTVRHNIKNFCRLKA----VGAPFRIIFLDEVDNMTKDAQH 118
Query: 160 ALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLD 219
ALRR +E YTK + F L CN +KII +QSRC FRFAP++ HV RL+ + AE L
Sbjct: 119 ALRREMEMYTKTSSFILSCNYSSKIIDPIQSRCAIFRFAPVKGRHVMGRLEAIAAAENLK 178
Query: 220 VTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLN 279
++ G + ++V GDMRKA+NILQ++ +++TE++V+ PKD+ +I L+
Sbjct: 179 ISPGAIESIVYFAEGDMRKAVNILQASSSMDEEVTEDSVHEVVSKAKPKDVRKIVNKALD 238
Query: 280 ESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKM----PSDVRVRLMNDLADIEYRL 335
F + + E + +G + D+V ++ V ++ M P DV + L+ + + +YR+
Sbjct: 239 GDFLGARDLLRESMVVQGTSGEDMVTQIYQEVSRMAMEELIPEDVYIDLIESIGEYDYRI 298
Query: 336 SFGCNDKLQLGSIISTF 352
G N ++QL ++++ F
Sbjct: 299 REGANPRIQLEALLTKF 315
>gi|159041490|ref|YP_001540742.1| replication factor C [Caldivirga maquilingensis IC-167]
gi|157920325|gb|ABW01752.1| Replication factor C [Caldivirga maquilingensis IC-167]
Length = 348
Score = 237 bits (605), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 127/319 (39%), Positives = 193/319 (60%), Gaps = 6/319 (1%)
Query: 37 DIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVAR 96
++K WVE++RP L D+ + + LPHLL YGPPG GKT+ LA+AR
Sbjct: 3 ELKELLWVERFRPVRLVDLVDQEGVKVGLMEFVRRGDLPHLLFYGPPGVGKTTAALALAR 62
Query: 97 KLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKD 156
+LYG + + +LELNASD+RGIDV+R+++++FA T KLV+LDEAD MT D
Sbjct: 63 ELYGDSWRSSVLELNASDERGIDVIREKVKEFARTIPTG---PVPFKLVILDEADNMTSD 119
Query: 157 AQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAE 216
AQ ALRR++E Y TRF L+ N ++ II +QSRC FRF PL V ERL+ + +
Sbjct: 120 AQQALRRIMEMYASTTRFILLANYISGIIEPIQSRCAIFRFNPLPKEAVIERLRQIAKET 179
Query: 217 GLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYW 276
G++VTE GL A+ + GDMRKA+N LQ+T ++++ EAVY G K +++
Sbjct: 180 GVEVTEDGLEAIWEVSQGDMRKAINTLQTTTTTNKKVDREAVYRVVGRVEFKVVDEFIES 239
Query: 277 LLNESFADSFKRISEMKMRKGLALVDIVREVT---MFVFKIKMPSDVRVRLMNDLADIEY 333
L+ F DS K + + G++ V++++ + + K K+P D +V + +ADI+
Sbjct: 240 ALSGRFEDSRKLLRNIMYTYGVSGVELLKYIEDELLINDKFKLPVDAKVEVSELVADIDN 299
Query: 334 RLSFGCNDKLQLGSIISTF 352
RL G ++++QL ++I+
Sbjct: 300 RLVTGSDEEIQLTALIAKL 318
>gi|320100775|ref|YP_004176367.1| replication factor C small subunit [Desulfurococcus mucosus DSM
2162]
gi|319753127|gb|ADV64885.1| replication factor C small subunit [Desulfurococcus mucosus DSM
2162]
Length = 347
Score = 237 bits (605), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 126/311 (40%), Positives = 198/311 (63%), Gaps = 8/311 (2%)
Query: 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 102
W EKYRP++L +V ++IV + + E +PH+L GPPGTGKT+ +A LYG
Sbjct: 30 WAEKYRPRTLDEVVNQKEIVVRLKKFVEEKSIPHMLFAGPPGTGKTTMAHCLAHDLYGDD 89
Query: 103 YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALR 162
Y +LELNASD+R I+V+R ++++FA ++ + K+VLLDEAD MT DAQ ALR
Sbjct: 90 YKKYMLELNASDERKIEVIRGKVKEFARSRVVG---EVPFKIVLLDEADNMTADAQQALR 146
Query: 163 RVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTE 222
R++E Y+ TRF L N +KII +QSR FRF+PL V ERL+++ AE + E
Sbjct: 147 RLMELYSATTRFILTANYPSKIIEPIQSRTAIFRFSPLRKEDVVERLRYICNAEKVKCDE 206
Query: 223 GGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESF 282
L + L GDMR+A+NILQ+T A ++ EEAVY G P+++ ++ L+ +F
Sbjct: 207 RALETIYELSEGDMRRAINILQTT-AALGEVVEEAVYKVIGLAHPREVREMLNEALSGNF 265
Query: 283 ADSFKRISEMKMRKGLALVDIVREVTMFVF--KIKMPSDVRVRLMNDLA-DIEYRLSFGC 339
++ ++ + + GL+ VDI+R++ +F ++K+P ++RV L+ DLA +I++RL G
Sbjct: 266 TEARNKLRTLMIEYGLSGVDIIRQIHKEIFSQEVKIPDEMRV-LIADLAGEIQFRLVEGA 324
Query: 340 NDKLQLGSIIS 350
+D++QL + ++
Sbjct: 325 DDEIQLNAFLA 335
>gi|296241869|ref|YP_003649356.1| replication factor C small subunit [Thermosphaera aggregans DSM
11486]
gi|296094453|gb|ADG90404.1| replication factor C small subunit [Thermosphaera aggregans DSM
11486]
Length = 325
Score = 237 bits (604), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 122/304 (40%), Positives = 191/304 (62%), Gaps = 6/304 (1%)
Query: 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 102
W EKYRP++L +V +IV + + S+ +PH+L GPPGTGKT+ +A LYG
Sbjct: 8 WTEKYRPRTLDEVVNQSEIVARLKKFVSDKNMPHMLFAGPPGTGKTTMAHCLAHDLYGDN 67
Query: 103 YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALR 162
Y ILELNASD+RGI+V+R ++++FA T+ K++LLDEAD MT DAQ ALR
Sbjct: 68 YRQYILELNASDERGIEVIRSKVKEFARTRVVG---NVPFKIILLDEADNMTADAQQALR 124
Query: 163 RVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTE 222
R++E YT +TRF LI N +KII +QSR FRF PL+ V ERLK++ E + E
Sbjct: 125 RLMELYTASTRFILIANYPSKIIEPIQSRTAVFRFTPLKREDVVERLKYICSNEKVKCHE 184
Query: 223 GGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESF 282
L + L GDMR+A+NILQ++ A + T E VY G P+++ ++ L+ +F
Sbjct: 185 DALNTIFELSEGDMRRAINILQAS-AALGEATVENVYKVVGLAHPREVREMIQLALSGNF 243
Query: 283 ADSFKRISEMKMRKGLALVDIVREVTMFVFK--IKMPSDVRVRLMNDLADIEYRLSFGCN 340
A++ ++ + + GL+ VD+V+++ +F IK+P ++++ + + + +I++RL G +
Sbjct: 244 AEARNKLRTLMITYGLSGVDVVKQIHKEIFSSDIKIPDEIKIVIADLVGEIQFRLVEGAD 303
Query: 341 DKLQ 344
D++Q
Sbjct: 304 DEIQ 307
>gi|397780149|ref|YP_006544622.1| Replication factor C small subunit [Methanoculleus bourgensis MS2]
gi|396938651|emb|CCJ35906.1| Replication factor C small subunit Short=RFC small subunit
[Methanoculleus bourgensis MS2]
Length = 324
Score = 237 bits (604), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 121/313 (38%), Positives = 190/313 (60%), Gaps = 3/313 (0%)
Query: 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 102
W+EKYRP+ L ++ +DIV + LPHLL G G GKT+ +A+AR+L+G
Sbjct: 10 WIEKYRPRRLDEMVGQQDIVVRLQSYVRTGNLPHLLFTGSAGIGKTTAAVALARELFGDS 69
Query: 103 YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALR 162
+ E+NASD+RGIDVVR QI++FA T + A+ K++ LDEADA+T DAQ ALR
Sbjct: 70 WQMNFREMNASDERGIDVVRNQIKEFARTSPLA---GATFKVLFLDEADALTTDAQAALR 126
Query: 163 RVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTE 222
R +E Y + RF L CN +KII +QSRC +RF PL+ V E + + EGL VTE
Sbjct: 127 RTMETYARTCRFILSCNYSSKIIDPIQSRCAIYRFRPLDREAVIEEITRIAAIEGLTVTE 186
Query: 223 GGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESF 282
G L A+V + +GDMRKA+N LQ + +I EE +Y T P +I+++ + F
Sbjct: 187 GALDAIVYVASGDMRKAINALQGAAILRPEIDEEMIYEITATARPDEIDELLDLSMEGRF 246
Query: 283 ADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDK 342
++ + +SE+ +G+A +++ + + + +P ++VRL++ L + ++RLS G +
Sbjct: 247 DEAEQALSELIRGRGIAPNELINQCYRSLVRRDLPRPLKVRLIDALGETDFRLSEGASSD 306
Query: 343 LQLGSIISTFTQA 355
+Q+ ++++ F A
Sbjct: 307 IQMEALLAKFVLA 319
>gi|440490537|gb|ELQ70082.1| replication factor C subunit 3 [Magnaporthe oryzae P131]
Length = 373
Score = 236 bits (602), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 138/347 (39%), Positives = 192/347 (55%), Gaps = 72/347 (20%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP SLADV+ H+DI+ T+++ NRLPHLLLYGPPGTGKTSTILA+AR++YGA
Sbjct: 45 PWVEKYRPVSLADVSGHQDILATVNKFVDANRLPHLLLYGPPGTGKTSTILALARRIYGA 104
Query: 102 -QYHNMILELNASDDRGIDVVRQQIQDFAST-QSFSFGVKA------------------- 140
M+LELNASDDRGIDVVR+QI+ FAST Q F+ G
Sbjct: 105 DNVRQMVLELNASDDRGIDVVREQIKTFASTKQIFTLGSTKPAAASSSASTSNNPSATRP 164
Query: 141 --SVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFA 198
S KL++LDEADAMT AQ ALRR++E
Sbjct: 165 TPSYKLIILDEADAMTNTAQMALRRIMEN------------------------------- 193
Query: 199 PLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMAS-------- 250
PL+ + + V+E E +++ + ALVRL GDMR+ALN+LQ+ H +S
Sbjct: 194 PLKEADIRVLVDRVVEEETVNIRPDAVDALVRLARGDMRRALNVLQACHASSTPLREKGA 253
Query: 251 ---------QQITEEAVYLCTGNPLPKDIEQISYWLLNES-FADSFKRISEMKMRKGLAL 300
IT E +Y C P P+ I++I LL S I+ +K +GLAL
Sbjct: 254 AADDKPVVRDTITVETIYNCIAAPPPEAIKEILDTLLATSDVVSCLGTINALKTTRGLAL 313
Query: 301 VDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDKLQLGS 347
DI+ ++ + K+++ +V + ++ LA+IE+R++ G + +Q G+
Sbjct: 314 ADIITALSEELVKLEVKPEVMITWLDGLAEIEHRVAGGAGEAVQTGA 360
>gi|171186449|ref|YP_001795368.1| replication factor C small subunit [Pyrobaculum neutrophilum
V24Sta]
gi|170935661|gb|ACB40922.1| Replication factor C [Pyrobaculum neutrophilum V24Sta]
Length = 328
Score = 236 bits (602), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 120/308 (38%), Positives = 189/308 (61%), Gaps = 4/308 (1%)
Query: 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 102
W EKYRP+S +V ++ + +PHLL YGPPGTGKT+ L +AR+LYG
Sbjct: 6 WFEKYRPRSFDEVVDLEEVKSRLREFVRSGNMPHLLFYGPPGTGKTTMALVLARELYGEY 65
Query: 103 YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALR 162
+ LELNASD+RGI+V+R+++++FA T +KA KLV+LDEAD MT DAQ ALR
Sbjct: 66 WRENTLELNASDERGINVIRERVKEFARTAP----IKAPFKLVILDEADNMTSDAQQALR 121
Query: 163 RVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTE 222
R++E Y +NTRF L+ N V++II + SRC FRF+P+ + ERLK++ + EG++V E
Sbjct: 122 RIMEIYAQNTRFILLANYVSRIIDPIISRCAVFRFSPMPRSLMAERLKYIAKREGIEVGE 181
Query: 223 GGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESF 282
L + L GDMRKA+N+LQ ++ + AV P DI ++ L +
Sbjct: 182 DALDLIYELSEGDMRKAINLLQVAAATNKVVDANAVAAAAAAVKPSDILELFNLALGGDY 241
Query: 283 ADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDK 342
+ +++ E+ KG+A VD +R + ++ + D++ + LAD++YRL+ G +++
Sbjct: 242 LKAREKLRELMYIKGVAGVDFIRAFQRELIRMPLDDDLKAEIAELLADVDYRLTQGADEE 301
Query: 343 LQLGSIIS 350
+Q+ +++
Sbjct: 302 IQMAYLLA 309
>gi|119719185|ref|YP_919680.1| replication factor C small subunit [Thermofilum pendens Hrk 5]
gi|150415673|sp|A1RWU7.1|RFCS_THEPD RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|119524305|gb|ABL77677.1| replication factor C small subunit [Thermofilum pendens Hrk 5]
Length = 325
Score = 236 bits (601), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 124/313 (39%), Positives = 184/313 (58%), Gaps = 6/313 (1%)
Query: 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 102
WVEKYRP+SL ++ +IV + +PHLL GPPGTGKT+ LA+A LYG
Sbjct: 6 WVEKYRPRSLDEIVDQEEIVKRLKEFVKNKNMPHLLFAGPPGTGKTTAALALAHDLYGES 65
Query: 103 YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALR 162
+ + LELNASD+RGIDV+R +I+D+A T KLV+LDEAD MT DAQ ALR
Sbjct: 66 WRDNTLELNASDERGIDVIRSRIKDYARTLPIG---DVPFKLVILDEADNMTGDAQQALR 122
Query: 163 RVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTE 222
R +E +++NTRF LI N +KII +QSRC FRF PL +RL+ + + EG+ V +
Sbjct: 123 RTMELFSRNTRFILIANYASKIIEPIQSRCAVFRFQPLPKGDAFQRLRWIAQQEGITVDD 182
Query: 223 GGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESF 282
G L A+ GD+RKA+N LQ+ S+ +TEE VY G PK++ ++ L +
Sbjct: 183 GALEAIWEESQGDLRKAINTLQAASAISRNVTEEVVYAALGRVKPKEVREMIESALKGNL 242
Query: 283 ADSFKRISEMKMRKGLALVDIVREVTMFVF---KIKMPSDVRVRLMNDLADIEYRLSFGC 339
++ ++ + GL+ VDI+R + V +++ L+ + + YR+ G
Sbjct: 243 LEARDKLRLLLYNYGLSGVDIIRFIHREVLSQKSVRLDDATLAELLVLVGETNYRIVEGS 302
Query: 340 NDKLQLGSIISTF 352
+D++QL +++S
Sbjct: 303 DDEIQLMALLSKL 315
>gi|227830342|ref|YP_002832122.1| replication factor C small subunit [Sulfolobus islandicus L.S.2.15]
gi|229579159|ref|YP_002837557.1| replication factor C small subunit [Sulfolobus islandicus
Y.G.57.14]
gi|284997767|ref|YP_003419534.1| replication factor C [Sulfolobus islandicus L.D.8.5]
gi|227456790|gb|ACP35477.1| Replication factor C [Sulfolobus islandicus L.S.2.15]
gi|228009873|gb|ACP45635.1| Replication factor C [Sulfolobus islandicus Y.G.57.14]
gi|284445662|gb|ADB87164.1| Replication factor C [Sulfolobus islandicus L.D.8.5]
Length = 330
Score = 236 bits (601), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 122/310 (39%), Positives = 193/310 (62%), Gaps = 6/310 (1%)
Query: 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 102
W EKYRP++L D+ R+I+D + + E +PHLL GPPGTGKT+ LA+ LYG
Sbjct: 10 WAEKYRPRTLDDIVNQREIIDRLKKFVKEKNMPHLLFAGPPGTGKTTAALALVHDLYGDN 69
Query: 103 YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALR 162
Y LELNASD+RGIDV+R ++++FA T S K+VLLDEAD MT DAQ ALR
Sbjct: 70 YVEYFLELNASDERGIDVIRNKVKEFARTVIPS---NVPFKVVLLDEADNMTADAQQALR 126
Query: 163 RVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTE 222
R +E YT+NTRF L CN ++KII +QSR FRF PL+ V RL ++ + E + +
Sbjct: 127 RTMELYTENTRFILACNYLSKIIEPIQSRTALFRFYPLKKEDVVNRLVYIAKNEKAEYDQ 186
Query: 223 GGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESF 282
L + + GDMRK++NILQ+ A +I+ EAV+ G PK++ ++ L F
Sbjct: 187 KALETIYDITMGDMRKSINILQAAS-AYGKISVEAVFKVLGLAQPKEVREMISLALQGKF 245
Query: 283 ADSFKRISEMKMRKGLALVDIVREVTMFVF--KIKMPSDVRVRLMNDLADIEYRLSFGCN 340
+ +++ + + GL+ DI++++ + ++++ ++RV L++ + + E+R+ G +
Sbjct: 246 TQAREKLRTLLVTYGLSGEDIIKQIHREITSSELQISEELRVLLLDYIGETEFRIIEGAD 305
Query: 341 DKLQLGSIIS 350
D++QL ++++
Sbjct: 306 DEIQLSALLA 315
>gi|429216858|ref|YP_007174848.1| DNA polymerase III, subunit gamma/tau [Caldisphaera lagunensis DSM
15908]
gi|429133387|gb|AFZ70399.1| DNA polymerase III, gamma/tau subunit [Caldisphaera lagunensis DSM
15908]
Length = 333
Score = 236 bits (601), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 122/313 (38%), Positives = 194/313 (61%), Gaps = 6/313 (1%)
Query: 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 102
W EKYRP++L D+ +DI + + E +PHLL GPPGTGKT+ A+A LYG
Sbjct: 17 WTEKYRPRTLKDIINQQDITTRLMKFVQEKNMPHLLFAGPPGTGKTTAAHALAHDLYGES 76
Query: 103 YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALR 162
Y +LELNASD+RGID +R+++++FA +++ + K+VLLDEAD MT DAQ ALR
Sbjct: 77 YQQFMLELNASDERGIDTIREKVKEFARSKT---PPEIPFKIVLLDEADNMTSDAQQALR 133
Query: 163 RVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTE 222
R++E Y+ +TRF L N +KII +QSRC FRF L+ V +RLK++ + EG+D E
Sbjct: 134 RLMELYSASTRFILAANYPSKIIDPIQSRCAFFRFTSLKKEDVIDRLKYIADKEGVDYEE 193
Query: 223 GGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESF 282
L + + GDMRKA+NILQ++ ++T E V+ G PKDI + L +F
Sbjct: 194 DALDIIFEISEGDMRKAINILQASAYLG-KVTSELVFKVVGMARPKDITDMIETALKGNF 252
Query: 283 ADSFKRISEMKMRKGLALVDIVREVTMFVF--KIKMPSDVRVRLMNDLADIEYRLSFGCN 340
++ + + ++ + GL+ D+V+++ + IK+ ++RV + + L +I +R+S G +
Sbjct: 253 IEAREILRKVMIEYGLSGEDVVKQIHREIMGPDIKINDELRVLIADYLGEIHFRISEGSD 312
Query: 341 DKLQLGSIISTFT 353
+ +QL + ++ +
Sbjct: 313 EDIQLSAFLAWLS 325
>gi|297620154|ref|YP_003708259.1| Replication factor C [Methanococcus voltae A3]
gi|297379131|gb|ADI37286.1| Replication factor C [Methanococcus voltae A3]
Length = 314
Score = 235 bits (600), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 113/309 (36%), Positives = 193/309 (62%), Gaps = 3/309 (0%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP +L+++ ++I++ + + +PHLL G PG GKT+ L +A+ LYG
Sbjct: 4 PWVEKYRPTTLSEIVGQKEIIERLKNYVEKQSMPHLLFSGSPGIGKTTAALCLAKDLYGD 63
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFAL 161
+ LELN+SD+RGIDV+R +++DFA T+ A K++ LDE+DA+T DAQ AL
Sbjct: 64 DWRENFLELNSSDERGIDVIRTKVKDFARTKPIG---DAPFKVIFLDESDALTSDAQNAL 120
Query: 162 RRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVT 221
RR +EKY+ RF L CN +KIIP +QSRC FRF+PL+ V + + ++ E E + +
Sbjct: 121 RRTMEKYSDICRFILSCNYPSKIIPPIQSRCAIFRFSPLKTEDVLDYMNYISENENITIE 180
Query: 222 EGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNES 281
+ G A++ + GDMRK++N+LQ+ S I E+ VY + P +I+++ +N
Sbjct: 181 KSGSDAIIYVSEGDMRKSVNVLQTAAAVSNVIDEDIVYKVSSRARPDEIKKMIDLAINAR 240
Query: 282 FADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCND 341
F ++ +++ ++ + G+ DI+ +V V + + + +V L+ +A+ ++R+ G ND
Sbjct: 241 FMEAREQLYKLMIDWGMGGQDILTQVFREVPYLDIEENEKVSLIEAIAECDFRIVEGGND 300
Query: 342 KLQLGSIIS 350
++QL ++++
Sbjct: 301 RIQLSALLA 309
>gi|15897670|ref|NP_342275.1| replication factor C small subunit [Sulfolobus solfataricus P2]
gi|284174995|ref|ZP_06388964.1| replication factor C small subunit [Sulfolobus solfataricus 98/2]
gi|384434284|ref|YP_005643642.1| replication factor C [Sulfolobus solfataricus 98/2]
gi|42559539|sp|Q9UXF5.1|RFCS_SULSO RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit;
AltName: Full=SsoRFC small subunit
gi|6015708|emb|CAB57535.1| activator 1, replication factor C, small subunit [Sulfolobus
solfataricus P2]
gi|13813941|gb|AAK41065.1| Activator 1, replication factor C, small subunit (rfc) [Sulfolobus
solfataricus P2]
gi|261602438|gb|ACX92041.1| Replication factor C [Sulfolobus solfataricus 98/2]
Length = 330
Score = 235 bits (599), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 123/310 (39%), Positives = 191/310 (61%), Gaps = 6/310 (1%)
Query: 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 102
W EKYRP++L D+ R+I+D + + E +PHLL GPPGTGKT+ LA+ LYG
Sbjct: 10 WAEKYRPKTLDDIVNQREIIDRLKKFVKEKNMPHLLFAGPPGTGKTTAALALVHDLYGDN 69
Query: 103 YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALR 162
Y LELNASD+RGIDV+R ++++FA T K+VLLDEAD MT DAQ ALR
Sbjct: 70 YTEYFLELNASDERGIDVIRNKVKEFART---VIPGDIPFKVVLLDEADNMTADAQQALR 126
Query: 163 RVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTE 222
R +E YT+NTRF L CN ++KII +QSR FRF PL+ V RL ++ + E + +
Sbjct: 127 RTMELYTENTRFILACNYLSKIIEPIQSRTALFRFYPLKKEDVVNRLIYIAKNEKAEYDQ 186
Query: 223 GGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESF 282
L + + GDMRK++NILQ+ A +I+ EAV+ G PK++ ++ L F
Sbjct: 187 KALETIYDITMGDMRKSINILQAAS-AYGKISVEAVFKVLGLAQPKEVREMINLALQGKF 245
Query: 283 ADSFKRISEMKMRKGLALVDIVREVTMFVF--KIKMPSDVRVRLMNDLADIEYRLSFGCN 340
+ ++ + + GL+ DIV+++ + +I++ ++RV L++ + + E+R+ G +
Sbjct: 246 TQARDKLRTLLITYGLSGEDIVKQIHREITSSEIQISEELRVLLLDYIGETEFRIIEGAD 305
Query: 341 DKLQLGSIIS 350
D++QL ++++
Sbjct: 306 DEIQLSALLA 315
>gi|410670416|ref|YP_006922787.1| replication factor C [Methanolobus psychrophilus R15]
gi|409169544|gb|AFV23419.1| replication factor C [Methanolobus psychrophilus R15]
Length = 301
Score = 235 bits (599), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 119/293 (40%), Positives = 184/293 (62%), Gaps = 6/293 (2%)
Query: 63 DTIDRLTS---ENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGID 119
+T++RL S LPHLL GPPG GKT+T +++AR+L+G + ELNASD+RGID
Sbjct: 6 ETVERLKSYIKTRNLPHLLFSGPPGVGKTATSVSIARELFGDSWRENFTELNASDERGID 65
Query: 120 VVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICN 179
VVR +I++FA T A K++ LDEADA+T DAQ ALRR +E+YT N RF L CN
Sbjct: 66 VVRTKIKNFAKTTPIG---GADFKIIFLDEADALTSDAQSALRRTMERYTNNCRFILSCN 122
Query: 180 QVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKA 239
+KII +QSRC +RF PL V R++ V + EGLD+ E G+ A+ + GDMRKA
Sbjct: 123 YSSKIIEPIQSRCAVYRFRPLSDEAVAGRVRFVAQNEGLDIAEDGVDAIKYVAQGDMRKA 182
Query: 240 LNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLA 299
+N LQ+ + + I +A+Y T P+ + ++ L+ +F + K + + +GL+
Sbjct: 183 INSLQAAALIADTIHRDAIYKITATARPEQVRELIETALSGNFTAARKHLDVFLLEQGLS 242
Query: 300 LVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDKLQLGSIISTF 352
D++ +V +F+I +P V L++ + +I++RL+ G N+++QL S+++ F
Sbjct: 243 GEDVIGQVYRAIFEINIPEKKMVELIDVIGEIDFRLTEGANERIQLESLLAHF 295
>gi|218884000|ref|YP_002428382.1| replication factor C small subunit [Desulfurococcus kamchatkensis
1221n]
gi|218765616|gb|ACL11015.1| replication factor C small subunit [Desulfurococcus kamchatkensis
1221n]
Length = 326
Score = 235 bits (599), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 125/311 (40%), Positives = 194/311 (62%), Gaps = 8/311 (2%)
Query: 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 102
W EKYRP++L +V +++V + + E +PH+L GPPGTGKT+ +A LYG
Sbjct: 9 WAEKYRPRTLDEVVNQKEVVVRLKKFVEEKNIPHMLFAGPPGTGKTTIAHCLAHDLYGDD 68
Query: 103 YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALR 162
Y +LELNASD+R I+V+R ++++FA T+ K+VLLDEAD MT DAQ ALR
Sbjct: 69 YRKYMLELNASDERKIEVIRGKVKEFARTRVVG---DVPFKIVLLDEADNMTADAQQALR 125
Query: 163 RVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTE 222
R++E Y+ TRF L N +KII +QSR FRF+PL V RLK++ AE ++ E
Sbjct: 126 RLMELYSATTRFILTANYPSKIIEPIQSRTAIFRFSPLSREDVVGRLKYICNAEKIECAE 185
Query: 223 GGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESF 282
L + L GDMR+A+NILQ T A ++ EEAVY G P+++ ++ L +F
Sbjct: 186 KALETIYELSEGDMRRAINILQ-TAAALGEVVEEAVYKVLGMAHPREVREMINTALAGNF 244
Query: 283 ADSFKRISEMKMRKGLALVDIVREVTMFVFK--IKMPSDVRVRLMNDLA-DIEYRLSFGC 339
++ ++ + + GL+ +DIV+++ +F +K+P ++RV L+ DLA +I++RL G
Sbjct: 245 TEARNKLRTLMIEYGLSGLDIVKQIHREIFSQDVKIPDEIRV-LIADLAGEIQFRLVEGA 303
Query: 340 NDKLQLGSIIS 350
+D++QL + ++
Sbjct: 304 DDEIQLNAFLA 314
>gi|227827646|ref|YP_002829426.1| replication factor C small subunit [Sulfolobus islandicus M.14.25]
gi|229584850|ref|YP_002843352.1| replication factor C small subunit [Sulfolobus islandicus M.16.27]
gi|238619814|ref|YP_002914640.1| replication factor C small subunit [Sulfolobus islandicus M.16.4]
gi|385773316|ref|YP_005645882.1| replication factor C [Sulfolobus islandicus HVE10/4]
gi|385775948|ref|YP_005648516.1| replication factor C [Sulfolobus islandicus REY15A]
gi|227459442|gb|ACP38128.1| Replication factor C [Sulfolobus islandicus M.14.25]
gi|228019900|gb|ACP55307.1| Replication factor C [Sulfolobus islandicus M.16.27]
gi|238380884|gb|ACR41972.1| Replication factor C [Sulfolobus islandicus M.16.4]
gi|323474696|gb|ADX85302.1| Replication factor C [Sulfolobus islandicus REY15A]
gi|323477430|gb|ADX82668.1| Replication factor C [Sulfolobus islandicus HVE10/4]
Length = 330
Score = 235 bits (599), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 121/310 (39%), Positives = 192/310 (61%), Gaps = 6/310 (1%)
Query: 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 102
W EKYRP++L D+ R+I+D + + E +PHLL GPPGTGKT+ LA+ LYG
Sbjct: 10 WAEKYRPRTLDDIVNQREIIDRLKKFVKEKNMPHLLFAGPPGTGKTTAALALVHDLYGDN 69
Query: 103 YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALR 162
Y LELNASD+RGIDV+R ++++FA T K+VLLDEAD MT DAQ ALR
Sbjct: 70 YVEYFLELNASDERGIDVIRNKVKEFART---VIPGNVPFKVVLLDEADNMTADAQQALR 126
Query: 163 RVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTE 222
R +E YT+NTRF L CN ++KII +QSR FRF PL+ V RL ++ + E + +
Sbjct: 127 RTMELYTENTRFILACNYLSKIIEPIQSRTALFRFYPLKKEDVVNRLVYIAKNEKAEYDQ 186
Query: 223 GGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESF 282
L + + GDMRK++NILQ+ A +I+ EAV+ G PK++ ++ L F
Sbjct: 187 KALETIYDITMGDMRKSINILQAAS-AYGKISVEAVFKVLGLAQPKEVREMISLALQGKF 245
Query: 283 ADSFKRISEMKMRKGLALVDIVREVTMFVF--KIKMPSDVRVRLMNDLADIEYRLSFGCN 340
+ +++ + + GL+ DI++++ + ++++ ++RV L++ + + E+R+ G +
Sbjct: 246 TQAREKLRTLLVTYGLSGEDIIKQIHREITSSELQISEELRVLLLDYIGETEFRIIEGAD 305
Query: 341 DKLQLGSIIS 350
D++QL ++++
Sbjct: 306 DEIQLSALLA 315
>gi|327311517|ref|YP_004338414.1| replication factor C small subunit [Thermoproteus uzoniensis
768-20]
gi|326947996|gb|AEA13102.1| replication factor C small subunit [Thermoproteus uzoniensis
768-20]
Length = 328
Score = 233 bits (595), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 123/322 (38%), Positives = 193/322 (59%), Gaps = 3/322 (0%)
Query: 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 102
W EKYRP+S +V ++ + +PHLL YGPPGTGKT+ L +AR+LYG
Sbjct: 8 WFEKYRPRSFEEVVDLEEVKARLKEFVKAGNMPHLLFYGPPGTGKTTMALVLARELYGDA 67
Query: 103 YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALR 162
+ LELNASD+RGI+V+R+++++FA T KA KLV+LDEAD MT DAQ ALR
Sbjct: 68 WRENTLELNASDERGINVIRERVKEFARTAPVG---KAPFKLVILDEADNMTSDAQQALR 124
Query: 163 RVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTE 222
R++E Y TRF L+ N V++II + SRC FRF P+ + +RL ++ + EG+ VTE
Sbjct: 125 RIMEMYANTTRFILLANYVSRIIDPIISRCAVFRFPPMPKELMAKRLAYIAKQEGITVTE 184
Query: 223 GGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESF 282
G+ A+ + GDMR+A+N+LQ AS+ + +E+V P +I + L+
Sbjct: 185 DGIDAIYEISQGDMRRAINLLQMAAAASRSVDKESVAAVASAARPSEILDVFNTALSGDV 244
Query: 283 ADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDK 342
+ +++ ++ KG+A VD +R + + +I++ + +V + L+D++YRL+ G +++
Sbjct: 245 EKAREKLRDLMYMKGIAGVDFLRALQRELPRIQLDDETKVAVAELLSDVDYRLAEGSDEE 304
Query: 343 LQLGSIISTFTQARSAIVAAAK 364
LQL ++ S A AK
Sbjct: 305 LQLTYMLVKLAAIGSKGKATAK 326
>gi|291333464|gb|ADD93165.1| putative ATPase family associated with various cellular activities
AAA [uncultured archaeon MedDCM-OCT-S05-C724]
Length = 321
Score = 233 bits (595), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 111/310 (35%), Positives = 192/310 (61%), Gaps = 3/310 (0%)
Query: 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 102
W+EKYRP +L++V + + E+ +PHLL GP G GKT++ LA+AR+++G
Sbjct: 5 WIEKYRPNNLSEVVGQEAVTTRLKNYVKESSMPHLLFAGPAGIGKTTSALALAREMFGEL 64
Query: 103 YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALR 162
+ + + ELNASD+RGIDVVR +I++FA T + K++ LDEADA+T AQ ALR
Sbjct: 65 WQHNLHELNASDERGIDVVRGKIKEFARTAPLG---EKGFKIIFLDEADALTGAAQAALR 121
Query: 163 RVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTE 222
R +EKY++ RF + CN +KII +QSRC FRF P++ + + LK V E + VT+
Sbjct: 122 RTMEKYSRTCRFVMSCNYSSKIIDPIQSRCAVFRFRPIKAEDLEKYLKFVASKENVKVTK 181
Query: 223 GGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESF 282
+L L GD+R+A+N LQ A ++T + VY P++++ L +F
Sbjct: 182 EAFESLTYLAQGDLRRAINGLQMAAAAKTEVTPDVVYQAVAAARPEEVKDALESALAGNF 241
Query: 283 ADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDK 342
+ + +++ +++ GLA D++R++ V +++P +++V ++ +A+ ++RLS G N +
Sbjct: 242 STAREKLDTLQITYGLAGEDVLRQMHRTVRDLEIPDNIKVLMIEKMAEADFRLSEGANSR 301
Query: 343 LQLGSIISTF 352
+Q+ +++++F
Sbjct: 302 IQIEAVVASF 311
>gi|390938548|ref|YP_006402286.1| replication factor C [Desulfurococcus fermentans DSM 16532]
gi|390191655|gb|AFL66711.1| Replication factor C [Desulfurococcus fermentans DSM 16532]
Length = 326
Score = 233 bits (594), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 124/311 (39%), Positives = 193/311 (62%), Gaps = 8/311 (2%)
Query: 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 102
W EKYRP++L +V +++V + + E +PH+L GPPGTGKT+ +A LYG
Sbjct: 9 WAEKYRPRTLDEVVNQKEVVVRLKKFVEEKNIPHMLFAGPPGTGKTTIAHCLAHDLYGDD 68
Query: 103 YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALR 162
Y +LELNASD+R I+V+R ++++FA + K+VLLDEAD MT DAQ ALR
Sbjct: 69 YRKYMLELNASDERKIEVIRGKVKEFARARVVG---DVPFKIVLLDEADNMTADAQQALR 125
Query: 163 RVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTE 222
R++E Y+ TRF L N +KII +QSR FRF+PL V RLK++ AE ++ E
Sbjct: 126 RLMELYSATTRFILTANYPSKIIEPIQSRTAIFRFSPLSREDVVGRLKYICNAEKIECAE 185
Query: 223 GGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESF 282
L + L GDMR+A+NILQ T A ++ EEAVY G P+++ ++ L +F
Sbjct: 186 KALETIYELSEGDMRRAINILQ-TAAALGEVVEEAVYKVLGMAHPREVREMINTALAGNF 244
Query: 283 ADSFKRISEMKMRKGLALVDIVREVTMFVFK--IKMPSDVRVRLMNDLA-DIEYRLSFGC 339
++ ++ + + GL+ +DIV+++ +F +K+P ++RV L+ DLA +I++RL G
Sbjct: 245 TEARNKLRTLMIEYGLSGLDIVKQIHREIFSQDVKIPDEIRV-LIADLAGEIQFRLVEGA 303
Query: 340 NDKLQLGSIIS 350
+D++QL + ++
Sbjct: 304 DDEIQLNAFLA 314
>gi|389615147|dbj|BAM20564.1| replication factor C subunit 3 [Papilio polytes]
Length = 184
Score = 233 bits (593), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 111/179 (62%), Positives = 135/179 (75%), Gaps = 4/179 (2%)
Query: 39 KASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKL 98
K PWV KYRP L + +H DI+ TI + EN+LPHLL YGPPGTGKTSTILA AR++
Sbjct: 8 KNLPWVXKYRPSKLEXLVSHDDIIKTIGQFMKENQLPHLLFYGPPGTGKTSTILACARQM 67
Query: 99 YGAQ-YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDA 157
Y Q +++M+LELNASDDRGI +VR QI FAST++ KA KL++LDEADAMT DA
Sbjct: 68 YTPQQFNSMVLELNASDDRGIGIVRGQILSFASTRTI---FKAGPKLIILDEADAMTNDA 124
Query: 158 QFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAE 216
Q ALRR+IEKYT N RF +ICN + KIIPALQSRCTRFRFAPL+ + RL+ ++E E
Sbjct: 125 QNALRRIIEKYTDNVRFCIICNYLGKIIPALQSRCTRFRFAPLQHAQIVPRLRDIVEKE 183
>gi|229582086|ref|YP_002840485.1| replication factor C small subunit [Sulfolobus islandicus
Y.N.15.51]
gi|228012802|gb|ACP48563.1| Replication factor C [Sulfolobus islandicus Y.N.15.51]
Length = 330
Score = 232 bits (592), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 121/310 (39%), Positives = 192/310 (61%), Gaps = 6/310 (1%)
Query: 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 102
W EKYRP++L D+ R+I+D + + E +PHLL GP GTGKT+ LA+ LYG
Sbjct: 10 WAEKYRPRTLDDIVNQREIIDRLKKFVKEKNMPHLLFAGPSGTGKTTAALALVHDLYGDN 69
Query: 103 YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALR 162
Y LELNASD+RGIDV+R ++++FA T S K+VLLDEAD MT DAQ ALR
Sbjct: 70 YVEYFLELNASDERGIDVIRNKVKEFARTVIPS---NVPFKVVLLDEADNMTADAQQALR 126
Query: 163 RVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTE 222
R +E YT+NTRF L CN ++KII +QSR FRF PL+ V RL ++ + E + +
Sbjct: 127 RTMELYTENTRFILACNYLSKIIEPIQSRTALFRFYPLKKEDVVNRLVYIAKNEKAEYDQ 186
Query: 223 GGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESF 282
L + + GDMRK++NILQ+ A +I+ EAV+ G PK++ ++ L F
Sbjct: 187 KALETIYDITMGDMRKSINILQAAS-AYGKISVEAVFKVLGLAQPKEVREMISLALQGKF 245
Query: 283 ADSFKRISEMKMRKGLALVDIVREVTMFVF--KIKMPSDVRVRLMNDLADIEYRLSFGCN 340
+ +++ + + GL+ DI++++ + ++++ ++RV L++ + + E+R+ G +
Sbjct: 246 TQAREKLRTLLVTYGLSGEDIIKQIHREITSSELQISEELRVLLLDYIGETEFRIIEGAD 305
Query: 341 DKLQLGSIIS 350
D++QL ++++
Sbjct: 306 DEIQLSALLA 315
>gi|379005452|ref|YP_005261124.1| DNA polymerase III subunit gamma and tau [Pyrobaculum oguniense
TE7]
gi|375160905|gb|AFA40517.1| DNA polymerase III, gamma/tau subunits [Pyrobaculum oguniense TE7]
Length = 329
Score = 232 bits (591), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 116/300 (38%), Positives = 183/300 (61%), Gaps = 3/300 (1%)
Query: 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 102
W EKYRP+ +V ++ + +PHLL YGPPGTGKT+ L +AR+LYG
Sbjct: 6 WFEKYRPRVFDEVVDLEEVKARLREFVRSGNMPHLLFYGPPGTGKTTMALVLARELYGEY 65
Query: 103 YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALR 162
+ LELNASD+RGI+V+R+++++FA T KA KLV+LDEAD MT DAQ ALR
Sbjct: 66 WRENTLELNASDERGINVIRERVKEFARTAPVG---KAPFKLVILDEADNMTSDAQQALR 122
Query: 163 RVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTE 222
R++E Y +NTRF L+ N V++II + SRC FRF+P+ + ERL+H+ ++EG+++ +
Sbjct: 123 RIMEMYAQNTRFILLANYVSRIIDPIISRCAVFRFSPMPRGLMAERLRHIAKSEGIELRD 182
Query: 223 GGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESF 282
+ + + GDMRKA+N+LQ S + AV T P D+ ++ LN
Sbjct: 183 DAIDLIYEVSEGDMRKAINLLQVAAATSNVVDANAVASATTMIRPADVIELFNLALNGDV 242
Query: 283 ADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDK 342
A + +++ E+ KG+A +D +R + ++ + +V+ + LAD++YRL+ G +++
Sbjct: 243 AKAREKLRELMYVKGIAGIDFIRAFQRELIRMPLDDEVKAEIAELLADVDYRLTQGSDEE 302
>gi|288931716|ref|YP_003435776.1| Replication factor C [Ferroglobus placidus DSM 10642]
gi|288893964|gb|ADC65501.1| Replication factor C [Ferroglobus placidus DSM 10642]
Length = 321
Score = 231 bits (590), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 115/311 (36%), Positives = 187/311 (60%), Gaps = 3/311 (0%)
Query: 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 102
WVEKYRP++L +V +I+ + + +PHLL GPPGTGKT+T +A+AR L+G
Sbjct: 6 WVEKYRPKTLDEVVGQDEIIQRLKSYVKQKNIPHLLFAGPPGTGKTATAIALARDLFGEV 65
Query: 103 YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALR 162
+ +E+NASD+RGIDVVR +I++FA T A K++ LDEADA+T DAQ ALR
Sbjct: 66 WRENFIEMNASDERGIDVVRHKIKEFARTAPIG---GAPFKIIFLDEADALTADAQAALR 122
Query: 163 RVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTE 222
R +E Y+K RF L CN V++II +QSRC F+F P+ + +RLK + E EGL++ +
Sbjct: 123 RTMEMYSKVCRFILSCNYVSRIIEPIQSRCAVFKFKPVPKEAMKKRLKEIAENEGLEIDD 182
Query: 223 GGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESF 282
L L+ + GD RKA+N LQ ++IT E +Y T P+++ +I L ++
Sbjct: 183 EALEVLIYISGGDFRKAINALQGAAALDKRITPEILYQITATARPEELRKIIDTALKGNY 242
Query: 283 ADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDK 342
+ + + G++ D+V ++ + + ++V L++ L +I++RL+ G ++
Sbjct: 243 LQAKDMLENLMAEYGMSGEDVVSQLFREIMYSNLDEKLKVVLIDKLGEIDFRLTEGASEL 302
Query: 343 LQLGSIISTFT 353
+QL + ++ +
Sbjct: 303 IQLNAYLAFLS 313
>gi|307353132|ref|YP_003894183.1| Replication factor C [Methanoplanus petrolearius DSM 11571]
gi|307156365|gb|ADN35745.1| Replication factor C [Methanoplanus petrolearius DSM 11571]
Length = 324
Score = 231 bits (590), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 116/309 (37%), Positives = 186/309 (60%), Gaps = 4/309 (1%)
Query: 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 102
W EKYRP++L DV ++IV + LPHLL GP G GKT++ +A+AR+ +G
Sbjct: 8 WTEKYRPKTLDDVVGQKEIVARLKSYVKTGSLPHLLFTGPAGIGKTTSAVALAREFFGEN 67
Query: 103 YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALR 162
+ ELNASD+RGIDVVR QI+ FA T A K++ LDEADA+T DAQ ALR
Sbjct: 68 WQVNFRELNASDERGIDVVRNQIKQFARTAPMG---GAEFKILFLDEADALTNDAQAALR 124
Query: 163 RVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTE 222
R +E Y RF L CN +KII +QSRC +RF PL+ VTE L + + EGL +TE
Sbjct: 125 RTMENYAYTCRFILSCNYSSKIIDPIQSRCALYRFRPLDREAVTEELNRIAKTEGLSITE 184
Query: 223 GGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESF 282
++A++ + GDMRKA+N LQ + S +I EE +Y T P +I ++ +++ +F
Sbjct: 185 DAMSAIIYVAQGDMRKAINALQGGAIISPEIKEEMIYEITSTARPDEIRELLSIIMDGNF 244
Query: 283 ADSFKRISEMKMRKGLALVDIVREV-TMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCND 341
+ +++ + +G+A ++++ + + ++ ++V +++ L D ++R+S G N
Sbjct: 245 NAAEHKLNGLITGRGIAPLELLNQFYRTLIDNQEIDRKMKVEMISHLGDADFRISEGANP 304
Query: 342 KLQLGSIIS 350
+Q+ ++++
Sbjct: 305 NIQMEALLA 313
>gi|391326181|ref|XP_003737599.1| PREDICTED: replication factor C subunit 4-like [Metaseiulus
occidentalis]
Length = 320
Score = 231 bits (590), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 126/317 (39%), Positives = 193/317 (60%), Gaps = 9/317 (2%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP+++ DVA+ ++V + + LPHLL +GPPGTGKTSTILA+AR LYG
Sbjct: 9 PWVEKYRPRTVDDVASQDEVVSVLKKCLQSGDLPHLLFFGPPGTGKTSTILALARDLYGN 68
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFAL 161
++ +LELNASD+RGI V+R+++++F+ Q + K ++V+LDEAD+MT+DAQ AL
Sbjct: 69 EFRQKVLELNASDERGISVIREKVKNFS--QMTANQGKIRYRIVILDEADSMTRDAQTAL 126
Query: 162 RRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVT 221
RR +EKYTK TRF LICN V KIIP L SRC++FRF PL + +L + E ++
Sbjct: 127 RRTMEKYTKTTRFCLICNYVTKIIPPLNSRCSKFRFRPLPTDVLVNKLDEICTKENVNFR 186
Query: 222 -EGGLAALVRLCNGDMRKALNILQSTH-MASQQITEEAVYLCTGNPLPKDIEQISYWLLN 279
L L+ L GDMR+A+ +LQS H +++++IT E + G +EQI
Sbjct: 187 GSDDLKFLIELAEGDMRRAVTLLQSAHRISAEKITREDIRNIAGVIPDNVVEQI----YT 242
Query: 280 ESFADSFKRISEMKMRKGLALVDIVRE-VTMFVFKIKMPSDVRVRLMNDLADIEYRLSFG 338
E D + +R+G + ++ + + M + ++ R L+ LA +E+R+ G
Sbjct: 243 EPVLDRLTKRMRDFVREGYSGDQLLTQLLQMIIADERIEDTKRAALLEKLAIVEHRMKDG 302
Query: 339 CNDKLQLGSIISTFTQA 355
++ + L + +T +
Sbjct: 303 ASELISLQDLAATIVSS 319
>gi|18312140|ref|NP_558807.1| replication factor C small subunit [Pyrobaculum aerophilum str.
IM2]
gi|42559513|sp|Q8ZYK4.1|RFCS1_PYRAE RecName: Full=Replication factor C small subunit 1; Short=RFC small
subunit 1; AltName: Full=Clamp loader small subunit 1
gi|18159573|gb|AAL62989.1| replication factor C small subunit [Pyrobaculum aerophilum str.
IM2]
Length = 329
Score = 231 bits (589), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 118/308 (38%), Positives = 187/308 (60%), Gaps = 3/308 (0%)
Query: 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 102
W EKYRP+S +V ++ + +PHLL YGPPGTGKT+ L +AR+LYG
Sbjct: 6 WFEKYRPRSFDEVVDLEEVKARLREFVKAGNMPHLLFYGPPGTGKTTMALVLARELYGEY 65
Query: 103 YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALR 162
+ LELNASD+RGI+V+R+++++FA T KA KLV+LDEAD MT DAQ ALR
Sbjct: 66 WRENTLELNASDERGINVIRERVKEFARTAPVG---KAPFKLVILDEADNMTSDAQQALR 122
Query: 163 RVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTE 222
R++E Y +NTRF L+ N V++II + SRC FRF+P+ + ERLK + + EG+++ E
Sbjct: 123 RIMEIYAQNTRFILLANYVSRIIDPIISRCAVFRFSPMPRSLMAERLKFIAKNEGVELRE 182
Query: 223 GGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESF 282
+ + L GDMRKA+N+LQ ++ + AV P DI ++ ++ F
Sbjct: 183 DAINMIYELSEGDMRKAINLLQVAAATNKVVDANAVASAAIAVRPADIIELFNLAISGDF 242
Query: 283 ADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDK 342
+ +++ E+ KG+A D +R + ++ + D++ + LAD++YRL+ G +++
Sbjct: 243 VKAREKLRELMYLKGIAGADFIRAFQRELIRMPIDDDIKAEIAELLADVDYRLTQGADEE 302
Query: 343 LQLGSIIS 350
+QL +++
Sbjct: 303 IQLTYLLT 310
>gi|325958394|ref|YP_004289860.1| replication factor C small subunit [Methanobacterium sp. AL-21]
gi|325329826|gb|ADZ08888.1| Replication factor C small subunit [Methanobacterium sp. AL-21]
Length = 347
Score = 231 bits (588), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 115/316 (36%), Positives = 190/316 (60%), Gaps = 8/316 (2%)
Query: 41 SPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYG 100
+PWVEKYRPQ+L +V + + R E +P+L+ GP G GKT+T +A+A+++ G
Sbjct: 29 APWVEKYRPQTLDEVVGQEHTILRLKRYVKEGNMPNLMFTGPAGVGKTTTSIALAKEMLG 88
Query: 101 AQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFA 160
+ LELNASD RGID VR I+ F ++ V + +++ LDE D MTKDAQ A
Sbjct: 89 EYWRQNFLELNASDARGIDTVRNDIKSFCRLKA----VGSPFRIIFLDEVDNMTKDAQHA 144
Query: 161 LRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDV 220
LRR +E YTK + F L CN +KII +QSRC FRF P++ + +RL+++ +AEGL +
Sbjct: 145 LRREMEMYTKTSSFILSCNYSSKIIDPIQSRCAIFRFVPVKGHQIIKRLEYIAQAEGLKI 204
Query: 221 TEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNE 280
+ ++V GDMR+A+NILQ++ A +++TEE+V PKD+++I L+
Sbjct: 205 DIAAIESIVYFAEGDMRRAVNILQASSSAGEEVTEESVDEVVSKAKPKDVKKIVNKALDG 264
Query: 281 SFADSFKRISEMKMRKGLALVDIV----REVTMFVFKIKMPSDVRVRLMNDLADIEYRLS 336
F + + + ++ + +G + D+V +EV+ + D+ + L+ + + +YR+
Sbjct: 265 DFIGARELLRDVMVVQGTSGEDMVTQIYQEVSKMALDGSLNEDIYINLVESIGETDYRIR 324
Query: 337 FGCNDKLQLGSIISTF 352
G N ++QL ++++ F
Sbjct: 325 EGSNPRIQLEALLTKF 340
>gi|126179196|ref|YP_001047161.1| replication factor C small subunit [Methanoculleus marisnigri JR1]
gi|150415672|sp|A3CUX9.1|RFCS_METMJ RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|125861990|gb|ABN57179.1| replication factor C small subunit [Methanoculleus marisnigri JR1]
Length = 322
Score = 231 bits (588), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 117/313 (37%), Positives = 188/313 (60%), Gaps = 3/313 (0%)
Query: 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 102
W+EKYRP+ L ++ +DIV + LPHLL G G GKT+ +A+AR+ +G
Sbjct: 8 WIEKYRPRRLDEMVGQKDIVVRLQSYVKTGNLPHLLFTGSAGIGKTTAAVALAREFFGDS 67
Query: 103 YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALR 162
+ E+NASD+RGIDVVR QI++FA T + A+ K++ LDEADA+T DAQ ALR
Sbjct: 68 WQTNFREMNASDERGIDVVRNQIKEFARTSPLA---GATFKILFLDEADALTTDAQAALR 124
Query: 163 RVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTE 222
R +E Y + RF L CN +KII +QSRC +RF PL+ V E + + AEGL VTE
Sbjct: 125 RTMETYARTCRFILSCNYSSKIIDPIQSRCAIYRFRPLDREAVIEETRRIAAAEGLTVTE 184
Query: 223 GGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESF 282
G L A+V + +GDMRKA+N LQ + I EE ++ T P++I+++ + F
Sbjct: 185 GALDAIVYVASGDMRKAINALQGAAILRTDIDEETIFEITATARPEEIDELLDLSIGGRF 244
Query: 283 ADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDK 342
++ + + E+ +G+A +++ + + + + ++V+L++ L + ++RLS G +
Sbjct: 245 DEAEQALLELTHVRGIAPNELINQCYRALVQRDIDRTLKVKLIDALGETDFRLSEGASSD 304
Query: 343 LQLGSIISTFTQA 355
+Q+ ++++ F A
Sbjct: 305 IQMEALLARFVLA 317
>gi|15678269|ref|NP_275384.1| replication factor C small subunit [Methanothermobacter
thermautotrophicus str. Delta H]
gi|42559322|sp|O26343.1|RFCS_METTH RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit;
AltName: Full=MthRFC small subunit
gi|2621290|gb|AAB84747.1| replication factor C, small subunit [Methanothermobacter
thermautotrophicus str. Delta H]
Length = 321
Score = 231 bits (588), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 118/321 (36%), Positives = 188/321 (58%), Gaps = 8/321 (2%)
Query: 38 IKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARK 97
I PWVEKYRPQ L D+ I+ + R E +P+L+ GP G GKT+ LA+AR+
Sbjct: 3 IMNGPWVEKYRPQKLDDIVGQEHIIPRLKRYVEEKSMPNLMFTGPAGVGKTTAALALARE 62
Query: 98 LYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDA 157
+ G + LELNASD RGID VR I++F + V A +++ LDE D MTKDA
Sbjct: 63 ILGEYWRQNFLELNASDARGIDTVRTSIKNFCRLKP----VGAPFRIIFLDEVDNMTKDA 118
Query: 158 QFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEG 217
Q ALRR +E YTK + F L CN +KII +QSRC FRF PL+ + +RL+++ E E
Sbjct: 119 QHALRREMEMYTKTSSFILSCNYSSKIIDPIQSRCAIFRFLPLKGHQIIKRLEYIAEKEN 178
Query: 218 LDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWL 277
L+ L +V GD+RKA+N+LQS ++ITE ++Y PKD+ ++ +
Sbjct: 179 LEYEAHALETIVYFAEGDLRKAINLLQSAASLGEKITESSIYDVVSRARPKDVRKMIKTI 238
Query: 278 LNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDV----RVRLMNDLADIEY 333
L+ F ++ + E+ + +G++ D+V ++ + ++ M +V V L++ + + ++
Sbjct: 239 LDGKFMEARDMLREIMVLQGISGEDMVTQIYQELSRLAMEGEVDGDRYVGLIDAIGEYDF 298
Query: 334 RLSFGCNDKLQLGSIISTFTQ 354
R+ G N ++QL ++++ F +
Sbjct: 299 RIREGANPRIQLEALLARFLE 319
>gi|17541988|ref|NP_500069.1| Protein RFC-2 [Caenorhabditis elegans]
gi|351021221|emb|CCD63484.1| Protein RFC-2 [Caenorhabditis elegans]
Length = 334
Score = 230 bits (587), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 128/315 (40%), Positives = 192/315 (60%), Gaps = 9/315 (2%)
Query: 41 SPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYG 100
+PWVEKYRP+ LAD+ + +IV+ + + E +P+++L GPPG GKT+++ A+AR+L G
Sbjct: 10 APWVEKYRPKVLADIVGNENIVERLKVIGHEGNVPNIVLSGPPGCGKTTSVWALARELLG 69
Query: 101 AQYHNMILELNASDDRGIDVVRQQIQDFASTQ-SFSFGVKASVKLVLLDEADAMTKDAQF 159
+ +LELNASD+RGIDVVR +I+ FA T+ + G K+++LDEAD+MT AQ
Sbjct: 70 DKVKEAVLELNASDERGIDVVRHRIKTFAQTKVTLPEGRH---KIIILDEADSMTDGAQQ 126
Query: 160 ALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLD 219
ALRR +E YTK TRFAL CNQ KII +QSRC R+ L PV + R+K V +AE ++
Sbjct: 127 ALRRTMEMYTKTTRFALACNQSEKIIEPIQSRCALLRYTKLSPVQLLTRVKEVAKAEKVN 186
Query: 220 VTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLN 279
+GGL A++ GDMR+ALN LQ+T A + + +E V P P + ++ ++ +
Sbjct: 187 YDDGGLEAILFTAQGDMRQALNNLQATVNAYELVNKENVLKVCDEPHPDLMIKMLHYCTD 246
Query: 280 ESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDV----RVRLMNDLADIEYRL 335
F ++ K I E R G + DIV + V +++ +V R+ + +A R+
Sbjct: 247 RKFFEASKIIHEFH-RLGFSSDDIVSTLFRVVKTVELSKNVSEQLRMEYIRQIAMCHMRI 305
Query: 336 SFGCNDKLQLGSIIS 350
G KLQL +I+
Sbjct: 306 VQGLTSKLQLSRLIA 320
>gi|358388819|gb|EHK26412.1| hypothetical protein TRIVIDRAFT_63722 [Trichoderma virens Gv29-8]
Length = 378
Score = 230 bits (587), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 114/229 (49%), Positives = 156/229 (68%), Gaps = 8/229 (3%)
Query: 25 NGKNVIVSGTPPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPG 84
NG + P D++A PWVEKYRP+SL DV A V + R + LPH+L YGPPG
Sbjct: 16 NGTSSQKQDKPADVRAQPWVEKYRPKSLDDVTAQDHTVTVLQRTLQASNLPHMLFYGPPG 75
Query: 85 TGKTSTILAVARKLYGAQY-HNMILELNASDDRGIDVVRQQIQDFASTQ----SFSFGVK 139
TGKTSTILA+A++LYG + + +LELNASD+RGI +VRQ+++DFA Q S+ K
Sbjct: 76 TGKTSTILALAKELYGPEMIKSRVLELNASDERGISIVRQKVKDFARMQLTNPPPSYKDK 135
Query: 140 ---ASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFR 196
K+++LDEAD+MT+DAQ ALRR +E Y+K TRF LICN V +II L SRC++FR
Sbjct: 136 YPCPPFKIIILDEADSMTQDAQSALRRTMETYSKITRFCLICNYVTRIIDPLASRCSKFR 195
Query: 197 FAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQS 245
F L+ + +RL+ + EAEG+ + +G + AL++ GD+RKA+ LQS
Sbjct: 196 FKSLDQSNAKKRLESIAEAEGVTLEDGAVDALIKCSEGDLRKAITFLQS 244
>gi|145590269|ref|YP_001152271.1| replication factor C small subunit [Pyrobaculum arsenaticum DSM
13514]
gi|158514158|sp|A4WGV2.1|RFCS1_PYRAR RecName: Full=Replication factor C small subunit 1; Short=RFC small
subunit 1; AltName: Full=Clamp loader small subunit 1
gi|145282037|gb|ABP49619.1| Replication factor C [Pyrobaculum arsenaticum DSM 13514]
Length = 329
Score = 230 bits (587), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 114/300 (38%), Positives = 183/300 (61%), Gaps = 3/300 (1%)
Query: 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 102
W EKYRP+S +V ++ + +PHLL YGPPGTGKT+ L +AR+LYG
Sbjct: 6 WFEKYRPRSFDEVVDLEEVKARLREFVRGGNMPHLLFYGPPGTGKTTMALVLARELYGEY 65
Query: 103 YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALR 162
+ LELNASD+RGI+V+R+++++FA T KA KLV+LDEAD MT DAQ ALR
Sbjct: 66 WRENTLELNASDERGINVIRERVKEFARTAPVG---KAPFKLVILDEADNMTSDAQQALR 122
Query: 163 RVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTE 222
R++E Y +NTRF L+ N V++II + SRC FRF+P+ + ERL+H+ ++EG+++ +
Sbjct: 123 RIMEMYAQNTRFILLANYVSRIIDPIISRCAVFRFSPMPRSLMAERLRHIAKSEGIELRD 182
Query: 223 GGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESF 282
+ + + GDMRKA+N+LQ S+ + AV T P D+ ++ N
Sbjct: 183 DAIDLIYEVSEGDMRKAINLLQVAAATSKVVDANAVASATTMIRPADVVELFNLAFNGDV 242
Query: 283 ADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDK 342
+ +++ E+ KG+A +D +R + ++ + +V+ + LA+++YRL+ G +++
Sbjct: 243 TKAREKLRELMYVKGIAGIDFIRAFQRELIRMPLDDEVKAEIAELLAEVDYRLTQGSDEE 302
>gi|154151216|ref|YP_001404834.1| replication factor C small subunit [Methanoregula boonei 6A8]
gi|166225154|sp|A7I8Y0.1|RFCS_METB6 RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|153999768|gb|ABS56191.1| Replication factor C [Methanoregula boonei 6A8]
Length = 322
Score = 230 bits (586), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 122/313 (38%), Positives = 180/313 (57%), Gaps = 3/313 (0%)
Query: 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 102
W+EKYRP LAD+ DIV+ + LPHLL G G GKT+ + +AR+ +G
Sbjct: 8 WIEKYRPAKLADIVGQDDIVERLSSYVKSGNLPHLLFTGSAGVGKTTAAVTLAREFFGDS 67
Query: 103 YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALR 162
+ ELNASD+RGIDVVR QI++FA T+ A+ K++ LDEADA+T DAQ ALR
Sbjct: 68 WQMNFRELNASDERGIDVVRNQIKEFARTRPAG---DAAFKILFLDEADALTTDAQAALR 124
Query: 163 RVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTE 222
R +E Y K RF L CN +KII +QSRC +RF PL P V E + + E LDVT
Sbjct: 125 RTMESYAKTCRFILSCNYSSKIIDPIQSRCAIYRFRPLGPQAVKEEITRIAAREHLDVTP 184
Query: 223 GGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESF 282
+ A+V + GDMRKA+N LQ + S I VY T N P++I ++ L+ F
Sbjct: 185 EAMDAMVYIAQGDMRKAINALQGAAILSATIEAPMVYAITSNARPEEIGELLTLSLSGDF 244
Query: 283 ADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDK 342
+ ++ + +G+A +++ + + K M ++V L++ L + ++RLS G +
Sbjct: 245 DGAEALLTRLLRERGIAPNELINQCYRALTKRDMDRVLKVELIDALGETDFRLSEGASSD 304
Query: 343 LQLGSIISTFTQA 355
+Q+ ++I+ F A
Sbjct: 305 IQMEALIARFVLA 317
>gi|358395863|gb|EHK45250.1| hypothetical protein TRIATDRAFT_151487 [Trichoderma atroviride IMI
206040]
Length = 381
Score = 229 bits (585), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 119/245 (48%), Positives = 159/245 (64%), Gaps = 19/245 (7%)
Query: 35 PPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAV 94
P D++A PWVEKYRP+SL DV A V + R + LPH+L YGPPGTGKTSTILA+
Sbjct: 26 PADVRAQPWVEKYRPKSLDDVTAQDHTVTVLQRTLQASNLPHMLFYGPPGTGKTSTILAL 85
Query: 95 ARKLYGAQY-HNMILELNASDDRGIDVVRQQIQDFASTQ----SFSFGVK---ASVKLVL 146
A++LYG + + +LELNASD+RGI +VRQ+++DFA Q S+ K K+++
Sbjct: 86 AKELYGPEMIKSRVLELNASDERGISIVRQKVKDFARMQLTNPPPSYKDKYPCPPFKIII 145
Query: 147 LDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVT 206
LDEAD+MT+DAQ ALRR +E Y+K TRF LICN V +II L SRC++FRF L+ +
Sbjct: 146 LDEADSMTQDAQSALRRTMETYSKITRFCLICNYVTRIIDPLASRCSKFRFKSLDQGNAK 205
Query: 207 ERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPL 266
RL+ + EAEG+ + +G + AL++ GD+RKA+ LQS A L PL
Sbjct: 206 RRLESIAEAEGVTLEDGAIDALIKCSEGDLRKAITFLQS-----------AARLVGAKPL 254
Query: 267 PKDIE 271
KD E
Sbjct: 255 EKDGE 259
>gi|145350673|ref|XP_001419724.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144579956|gb|ABO98017.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 342
Score = 229 bits (585), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 127/331 (38%), Positives = 200/331 (60%), Gaps = 12/331 (3%)
Query: 41 SPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYG 100
+PWVEKYRP+ + DVA+ IV ++ +PH L YGPPGTGKT+T LA+A++LYG
Sbjct: 16 APWVEKYRPRVVKDVASQEQIVGVLENALKTGNMPHCLFYGPPGTGKTTTALAIAKELYG 75
Query: 101 AQ-YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKAS------VKLVLLDEADAM 153
+ Y + ELNASD+RGI VVR +I+ FAS + G A K+++LDEADAM
Sbjct: 76 PELYKQRVKELNASDERGISVVRNKIKTFASQ---AVGAPAPGYPSPPYKILILDEADAM 132
Query: 154 TKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVI 213
T DAQ ALRR++E Y+K TRF L+CN V KII + SRC +FRF+PL + RLK +
Sbjct: 133 TGDAQSALRRMMETYSKVTRFFLLCNYVTKIIDPIASRCAKFRFSPLAQETMGARLKFIG 192
Query: 214 EAEGLDVTEGGLAALVRLCNGDMRKALNILQS-THMASQQITEEAVYLCTGNPLPKDIEQ 272
E EGL++++ A + GDMRKA+ +LQS + + +I+ ++ G+ +P + +
Sbjct: 193 EQEGLEMSDDVFAMCSKHSGGDMRKAITLLQSAARLFAGKISGASIVEVAGH-IPDEKIK 251
Query: 273 ISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIE 332
Y L E + + E +R G + + I+ + + +V + +V+ + L +++
Sbjct: 252 KMYDLCREGKFEEAQAHMEDILRDGFSGLKILDQYSDYVLEADCSDEVKAEIFIKLGEVD 311
Query: 333 YRLSFGCNDKLQLGSIISTFTQARSAIVAAA 363
L+ G ++ +QL +++ST +A + + +AA
Sbjct: 312 RFLAQGADEGMQLATLVSTSIKALAKMASAA 342
>gi|374327674|ref|YP_005085874.1| replication factor C small subunit [Pyrobaculum sp. 1860]
gi|356642943|gb|AET33622.1| replication factor C small subunit [Pyrobaculum sp. 1860]
Length = 329
Score = 229 bits (584), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 119/308 (38%), Positives = 188/308 (61%), Gaps = 3/308 (0%)
Query: 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 102
W EKYRP+S +V ++ + +PHLL YGPPGTGKT+ L +AR+LYG
Sbjct: 6 WFEKYRPRSFDEVVDLEEVKARLRGFVKSGDMPHLLFYGPPGTGKTTMALVLARELYGEY 65
Query: 103 YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALR 162
+ LELNASD+RGI+V+R+++++FA T KA KLV+LDEAD MT DAQ ALR
Sbjct: 66 WRENTLELNASDERGINVIRERVKEFARTAPVG---KAPFKLVILDEADNMTSDAQQALR 122
Query: 163 RVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTE 222
R++E Y +NTRF L+ N V++II + SRC FRF+P+ + ERL+ + ++EG+++ +
Sbjct: 123 RIMEIYAQNTRFILLANYVSRIIDPIISRCAIFRFSPMPKNLMAERLRLIAKSEGVELRD 182
Query: 223 GGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESF 282
+ + L GDMRKA+N+LQ ++ + AV P DI ++ +
Sbjct: 183 DAIDIIYELSEGDMRKAINLLQVVAATNKVVDSNAVAAAAATIKPSDIIELFNLAIGGDV 242
Query: 283 ADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDK 342
+ + +++ E+ KG+A VD +R + ++ + DV+ + LADI+YRL+ G +++
Sbjct: 243 SKAREKLRELMYLKGVAGVDFIRAFQRELIRMALDDDVKAEIAELLADIDYRLTQGADEE 302
Query: 343 LQLGSIIS 350
+QL ++S
Sbjct: 303 IQLTYLLS 310
>gi|41614964|ref|NP_963462.1| replication factor C small subunit [Nanoarchaeum equitans Kin4-M]
gi|42559422|sp|P60374.1|RFCS_NANEQ RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|40068688|gb|AAR39023.1| NEQ170 [Nanoarchaeum equitans Kin4-M]
Length = 322
Score = 229 bits (584), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 113/310 (36%), Positives = 192/310 (61%), Gaps = 5/310 (1%)
Query: 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 102
W EKYRP+ + D+ +I + + +PHLL GPPGTGKT+ LA+A +LYG
Sbjct: 4 WTEKYRPKRIDDIINQEEIKKALKSFVEKKNMPHLLFAGPPGTGKTTAALALAHELYGDA 63
Query: 103 YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALR 162
+ LELNASD+RGIDV+R ++++FA + K+V LDEADA+T+DAQ ALR
Sbjct: 64 WRENFLELNASDERGIDVIRHKVKEFARAKPIG---DVPFKIVFLDEADALTRDAQQALR 120
Query: 163 RVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEG--LDV 220
R++EKY+++TRF L CN +KII +QSR T F+F PLE E + +++ EG L+
Sbjct: 121 RIMEKYSQSTRFILSCNYFSKIIEPIQSRVTVFKFKPLEKEAFRELINRIVKGEGLILEN 180
Query: 221 TEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNE 280
+ + AL + GD+RKA+NILQ+ M S+ IT + +Y PK+I+++ +
Sbjct: 181 EDEIINALYDIAEGDLRKAINILQAAAMMSKTITVDRLYEIASIAKPKEIDEVLNKAMQG 240
Query: 281 SFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCN 340
+F ++ + ++ ++ G++ D+++ + V+ + + ++ +++ + DIE+R+ G +
Sbjct: 241 NFLEARSMLIDLMLKYGMSGEDVIKAIQKRVWSLPISDREKLMILDKIGDIEFRIVEGAD 300
Query: 341 DKLQLGSIIS 350
D +QL ++++
Sbjct: 301 DLVQLDALLA 310
>gi|84489225|ref|YP_447457.1| replication factor C small subunit [Methanosphaera stadtmanae DSM
3091]
gi|110287813|sp|Q2NH89.1|RFCS_METST RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|84372544|gb|ABC56814.1| RfcS [Methanosphaera stadtmanae DSM 3091]
Length = 321
Score = 229 bits (584), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 123/316 (38%), Positives = 188/316 (59%), Gaps = 8/316 (2%)
Query: 41 SPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYG 100
+PWVEKYRPQ+L DV IV + R E LP+++ G G GKT+ LA+A+ L G
Sbjct: 3 TPWVEKYRPQTLDDVVGQEQIVGRLKRYVEEKSLPNIMFTGFAGVGKTTCALALAKSLLG 62
Query: 101 AQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFA 160
+ LELNASD RGID VR +I+ F ++ V A +++ LDE D MTKDAQ A
Sbjct: 63 EYWQQNFLELNASDARGIDTVRNEIKSFCKLKA----VGAPFRIIFLDEVDNMTKDAQQA 118
Query: 161 LRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDV 220
LRR +E YTK + F L CN +KII +QSRC FRF+P++ ++ +RLK++ EG++
Sbjct: 119 LRREMEMYTKTSSFILSCNYSSKIIDPIQSRCAIFRFSPIKAANIIKRLKYIASEEGIEA 178
Query: 221 TEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNE 280
+ L +V GDMRK++NILQ++ +TEEAVY PKD+ +I LN
Sbjct: 179 EQSALENIVYFTQGDMRKSINILQASTTTENTVTEEAVYDVISRAKPKDVRKIINKALNH 238
Query: 281 SFADSFKRISEMKMRKGLALVDIV----REVTMFVFKIKMPSDVRVRLMNDLADIEYRLS 336
F ++ + ++ + +G++ D++ +EV + +P ++LM +++ +YR+
Sbjct: 239 DFMEARDLLRDIMIIEGVSGDDLITQFYQEVAQMTQEELIPEVEFIKLMEYMSECDYRIR 298
Query: 337 FGCNDKLQLGSIISTF 352
G N +LQL +++S F
Sbjct: 299 EGSNPRLQLEALLSKF 314
>gi|341889869|gb|EGT45804.1| hypothetical protein CAEBREN_18241 [Caenorhabditis brenneri]
Length = 326
Score = 229 bits (583), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 126/319 (39%), Positives = 191/319 (59%), Gaps = 9/319 (2%)
Query: 41 SPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYG 100
+PWVEKYRPQ L+D+ + + VD + + E LP+++L GPPG GKT+++ AVAR+L G
Sbjct: 10 APWVEKYRPQLLSDIVGNENNVDRLKVIAKEGNLPNVILSGPPGCGKTTSVWAVARELLG 69
Query: 101 AQYHNMILELNASDDRGIDVVRQQIQDFASTQ-SFSFGVKASVKLVLLDEADAMTKDAQF 159
+ + +LELNASD+RGIDVVR +I+ FA T+ + G K+++LDEAD+MT+ AQ
Sbjct: 70 DKVKDAVLELNASDERGIDVVRNRIKTFAQTKVTLPEGRH---KIIILDEADSMTEGAQQ 126
Query: 160 ALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLD 219
ALRR +E Y+K TRFAL CNQ K+I +QSRC R+ L PV + R+K + +AE ++
Sbjct: 127 ALRRTMELYSKTTRFALACNQSEKVIEPIQSRCCLLRYQKLSPVELLVRVKEIAKAENVN 186
Query: 220 VTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLN 279
+GGL A++ GDMR+ALN LQ+T A + + +E V P P + ++ +
Sbjct: 187 YDDGGLEAILFTAQGDMRQALNNLQATVNAYELVNKENVLKVCDEPHPDLMVKMLMYCTE 246
Query: 280 ESFADSFKRISEMKMRKGLALVDIV----REVTMFVFKIKMPSDVRVRLMNDLADIEYRL 335
+ F ++ K I E R G + DI+ R V K+ +R + ++A R+
Sbjct: 247 KKFFEACKIIHEF-YRLGFSADDIISTLFRVVKTIDLSKKVTEALRAEYIREIACCHMRI 305
Query: 336 SFGCNDKLQLGSIISTFTQ 354
G KLQL +++ +
Sbjct: 306 CQGLTSKLQLSRLVAGLCR 324
>gi|303274701|ref|XP_003056666.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226461018|gb|EEH58311.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 331
Score = 229 bits (583), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 127/324 (39%), Positives = 193/324 (59%), Gaps = 8/324 (2%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP+ + DV+ ++V T+ + +PH+L YGPPGTGKT+ LA+ R+LYG
Sbjct: 8 PWVEKYRPRKIGDVSHQEEVVRTLQKALETANMPHMLFYGPPGTGKTTCALAICRQLYGP 67
Query: 102 Q-YHNMILELNASDDRGIDVVRQQIQDFAST---QSFSFGVKASVKLVLLDEADAMTKDA 157
+ + +LELNASD+RGI VVR +I+ FAST Q+ K+++LDEAD+MT DA
Sbjct: 68 DLFKSRVLELNASDERGISVVRNKIKGFASTAVGQAVPGYPCPPYKILILDEADSMTTDA 127
Query: 158 QFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEG 217
Q ALRR +E ++K TRF ++CN V++II + SRC +FRF PL +++RLKH+ E EG
Sbjct: 128 QSALRRTMETHSKVTRFFILCNYVSRIIEPIASRCAKFRFKPLGSEVMSDRLKHIAEREG 187
Query: 218 LDVTEGGLAALVRLCNGDMRKALNILQSTH--MASQQITEEAVYLCTGNPLPKDIEQISY 275
L + EG A + GDMRKA+ +LQS+ ++++T E + G D+ ++
Sbjct: 188 LTLGEGVYDAAAKHSGGDMRKAITLLQSSARLFGAKELTGEDIIAVAGAIAEDDVAELLD 247
Query: 276 WLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSD-VRVRLMNDLADIEYR 334
+F + ++ M +R G + I+ + V + SD V+ R+ A+ +
Sbjct: 248 LCGKNAFDRAIGKLDVM-LRDGFPGLQILTQFADAVTNSENCSDGVKARICLAAAEADKA 306
Query: 335 LSFGCNDKLQLGSIISTFTQARSA 358
L G +D LQLG+++S A S
Sbjct: 307 LIDGSDDSLQLGAVVSVACLAMSG 330
>gi|323307584|gb|EGA60853.1| Rfc3p [Saccharomyces cerevisiae FostersO]
Length = 201
Score = 228 bits (582), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 110/189 (58%), Positives = 139/189 (73%), Gaps = 5/189 (2%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP++L +V +++ T+ + E +LPHLL YGPPGTGKTSTI+A+AR++YG
Sbjct: 14 PWVEKYRPETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGK 73
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFAST-QSFSFGVKASVKLVLLDEADAMTKDAQFA 160
Y NM+LELNASDDRGIDVVR QI+DFAST Q FS G KL++LDEADAMT AQ A
Sbjct: 74 NYSNMVLELNASDDRGIDVVRNQIKDFASTRQIFSKG----FKLIILDEADAMTNAAQNA 129
Query: 161 LRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDV 220
LRRVIE+YTKNTRF ++ N +K+ PAL SRCTRFRF PL + R+ +V+ E L +
Sbjct: 130 LRRVIERYTKNTRFCVLANYAHKLTPALLSRCTRFRFQPLPQEAIERRIANVLVHEKLKL 189
Query: 221 TEGGLAALV 229
+ AL+
Sbjct: 190 SPNAEKALI 198
>gi|410720678|ref|ZP_11360031.1| DNA polymerase III, gamma/tau subunit [Methanobacterium sp.
Maddingley MBC34]
gi|410600389|gb|EKQ54917.1| DNA polymerase III, gamma/tau subunit [Methanobacterium sp.
Maddingley MBC34]
Length = 321
Score = 228 bits (581), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 118/316 (37%), Positives = 188/316 (59%), Gaps = 8/316 (2%)
Query: 41 SPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYG 100
PWVEKYRPQ+L +V I+ + + +E +P+L+ GP G GKT+T +A+A+ + G
Sbjct: 3 GPWVEKYRPQTLDEVVGQDHIIQRLKQYINEANMPNLMFTGPAGVGKTTTAIALAKAMLG 62
Query: 101 AQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFA 160
+ LELNASD RGI+ VR+ I+ F ++ A +++ LDE D MTKDAQ A
Sbjct: 63 EYWKQNFLELNASDARGIETVRKDIKSFCRLKAMG----APFRIIFLDEVDNMTKDAQHA 118
Query: 161 LRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDV 220
LRR +E YTK + F L CN +KII +QSRC FRFAP++ V +RL+ + +AE ++
Sbjct: 119 LRREMEMYTKTSSFILSCNYSSKIIDPIQSRCAIFRFAPIKGHQVIKRLEVIAKAENVNY 178
Query: 221 TEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNE 280
G L ++V GDMR+A+NILQST +++ EE V+ PKD+ +I L+
Sbjct: 179 APGTLESIVYFAEGDMRRAVNILQSTASMGEEVNEETVHEVVSKAKPKDVRRIVNLALDG 238
Query: 281 SFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKM----PSDVRVRLMNDLADIEYRLS 336
F + + E+ + +G + D+V +V V K+ M S+ ++L+ + + ++R+
Sbjct: 239 DFMGARDLLREVMVVQGTSGEDMVTQVYQEVSKMAMDDLISSEDYIKLVEHIGEYDFRIR 298
Query: 337 FGCNDKLQLGSIISTF 352
G N ++QL ++++ F
Sbjct: 299 EGANPRIQLEALLTKF 314
>gi|352682669|ref|YP_004893193.1| replication factor C small subunit [Thermoproteus tenax Kra 1]
gi|350275468|emb|CCC82115.1| replication factor C small subunit [Thermoproteus tenax Kra 1]
Length = 321
Score = 228 bits (581), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 117/308 (37%), Positives = 182/308 (59%), Gaps = 3/308 (0%)
Query: 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 102
W EKYRP+S A++ +I + +PHLL YGPPGTGKT+T L +AR+LYG +
Sbjct: 6 WFEKYRPKSFAEIVDLEEIKARLAEFIKAGNMPHLLFYGPPGTGKTTTALVLARELYGER 65
Query: 103 YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALR 162
+ LELNASD+RGI+V+R+++++FA T A KLV+LDEAD MT DAQ ALR
Sbjct: 66 WRENTLELNASDERGINVIRERVKEFARTAPAG---GAPFKLVVLDEADNMTSDAQQALR 122
Query: 163 RVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTE 222
R++E Y TRF L+ N V+ II +QSRC FRF+PL V RL+++ E EGL VT+
Sbjct: 123 RIMEMYAATTRFVLLANYVSGIIEPIQSRCAVFRFSPLPKDAVVARLRYIAEQEGLKVTQ 182
Query: 223 GGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESF 282
L A+ GDMR+A+ LQ +++I EEA+ G P + ++ ++ F
Sbjct: 183 DALEAIFDFTQGDMRRAITALQIASSTTREIDEEAIARALGYVSPSILRRLIAEAISGDF 242
Query: 283 ADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDK 342
+ + +I + G+ ++++R++ V ++ +P ++ L ++ Y + G N
Sbjct: 243 SKAISQIYGIVADGGVGELELIRQIHREVLRLDVPEHLKPDLAYEVERAHYAVLRGANGL 302
Query: 343 LQLGSIIS 350
+Q+ I++
Sbjct: 303 VQIYGILA 310
>gi|408383246|ref|ZP_11180783.1| replication factor C small subunit [Methanobacterium formicicum DSM
3637]
gi|407814028|gb|EKF84666.1| replication factor C small subunit [Methanobacterium formicicum DSM
3637]
Length = 321
Score = 228 bits (581), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 119/316 (37%), Positives = 190/316 (60%), Gaps = 8/316 (2%)
Query: 41 SPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYG 100
PWVEKYRPQ+L +V I+ + + +E +P+L+ GP G GKT+T +A+A+ + G
Sbjct: 3 GPWVEKYRPQTLDEVVGQDHIIHRLKQYINEANMPNLMFTGPAGVGKTTTAIALAKAMLG 62
Query: 101 AQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFA 160
+ LELNASD RGI+ VR+ I+ F ++ V + +++ LDE D MTKDAQ A
Sbjct: 63 EYWKQNFLELNASDARGIETVRKDIKSFCRLKA----VGSPFRIIFLDEVDNMTKDAQHA 118
Query: 161 LRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDV 220
LRR +E YTK + F L CN +KII +QSRC FRFAP++ V ERL+ + +AE ++
Sbjct: 119 LRREMEMYTKTSSFILSCNYSSKIIDPIQSRCAIFRFAPIKGHQVIERLEIIAKAENVNY 178
Query: 221 TEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNE 280
G L ++V GDMR+A+NILQST ++ITE+ V+ PKD+ +I L+
Sbjct: 179 APGTLESIVYFAEGDMRRAVNILQSTASMGEEITEDIVHDVVSKAKPKDVRRIVNLALDG 238
Query: 281 SFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKM----PSDVRVRLMNDLADIEYRLS 336
F + + E+ + +G + D+V +V V ++ M S+ ++L+ + + ++R+
Sbjct: 239 DFMGARDLLREVMVVQGTSGEDMVTQVYQEVSRMAMDDLISSEDYIKLVEHIGEYDFRIR 298
Query: 337 FGCNDKLQLGSIISTF 352
G N ++QL ++++ F
Sbjct: 299 EGANPRIQLEALLTKF 314
>gi|288560386|ref|YP_003423872.1| replication factor C small subunit RfcS [Methanobrevibacter
ruminantium M1]
gi|288543096|gb|ADC46980.1| replication factor C small subunit RfcS [Methanobrevibacter
ruminantium M1]
Length = 314
Score = 228 bits (580), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 119/316 (37%), Positives = 189/316 (59%), Gaps = 9/316 (2%)
Query: 41 SPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYG 100
PWVEKYRPQ+L D+ + IV+++ + + +P+L+ GP G GKT++ LA+ + + G
Sbjct: 3 GPWVEKYRPQTLDDIVGQKHIVESLKKYVDQGSMPNLMFTGPAGVGKTTSALALVKAILG 62
Query: 101 AQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFA 160
+ LELNASD RGI+ VR I++F + V A +++ LDE D MTKDAQ A
Sbjct: 63 DYWRQNFLELNASDARGIETVRTNIKNFCRLKP----VGAPFRIIFLDEVDNMTKDAQHA 118
Query: 161 LRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDV 220
LRR +E YTK F L CN +KII +QSRC FRFAP++ + +RLK++ EAEG +
Sbjct: 119 LRREMEMYTKTCSFILSCNYSSKIIDPIQSRCAIFRFAPIKAEEIADRLKYIAEAEGCEY 178
Query: 221 TEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNE 280
E + +V GDMRK++N+LQS ++ ITE+ VY P++I+++ L
Sbjct: 179 EEKAIETIVLFGEGDMRKSVNMLQSAA-STGNITEDHVYEVVTKARPQEIKEMVDAALRG 237
Query: 281 SFADSFKRISEMKMRKGLALVDIV----REVTMFVFKIKMPSDVRVRLMNDLADIEYRLS 336
F +S + ++ + +G + D+V ++V V KM +V + L+ +AD ++R+
Sbjct: 238 KFMESRNILRDVMILQGTSGEDMVNQIYQDVAGRVMDGKMSGEVYMELIGAIADTDFRIR 297
Query: 337 FGCNDKLQLGSIISTF 352
G N ++QL ++++ F
Sbjct: 298 EGANPRIQLEALLAKF 313
>gi|66808355|ref|XP_637900.1| replication factor C subunit [Dictyostelium discoideum AX4]
gi|74853593|sp|Q54MD4.1|RFC4_DICDI RecName: Full=Probable replication factor C subunit 4; AltName:
Full=Activator 1 subunit 4
gi|60466332|gb|EAL64392.1| replication factor C subunit [Dictyostelium discoideum AX4]
Length = 347
Score = 228 bits (580), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 123/312 (39%), Positives = 188/312 (60%), Gaps = 9/312 (2%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWV KYRP+++ DV+ D++ + + + LPHLL YGPPGTGKTSTILA+A +YG
Sbjct: 11 PWVAKYRPKTVDDVSYQEDVISALKKSLNTGNLPHLLFYGPPGTGKTSTILAIAMDIYGP 70
Query: 102 QYHNM-ILELNASDDRGIDVVRQQIQDFAS-----TQSFSFGVKASVKLVLLDEADAMTK 155
+ +LELNASD+RGI+VVR +I++FA T + + A+ KL++LDEAD+MT
Sbjct: 71 ELMKQRVLELNASDERGIEVVRTKIKNFAGYAVNKTTTGTSNPGATFKLIILDEADSMTT 130
Query: 156 DAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEA 215
DAQ ALRR IE +K TRF L+CN +++II L SRC +FRF PL+ V ERLK + +
Sbjct: 131 DAQAALRRTIETTSKTTRFCLLCNYISRIIDPLASRCAKFRFKPLDTVATIERLKFISQQ 190
Query: 216 EGLDVTEGGLAALVRLCNGDMRKALNILQST-HMASQQITEEAVYLCTGNPLPKDIEQIS 274
EG+ E A+ + NGDMRKA+ LQS + +I+E+ +Y G+ P+ I+Q+
Sbjct: 191 EGIKCEESVYQAIQVVSNGDMRKAITYLQSAFRFFANKISEDVIYNIAGSLPPQLIKQLV 250
Query: 275 YWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIK-MPSDVRVRLMNDLADIEY 333
SF D + + + + +G + ++ ++ +V K + + + + +++
Sbjct: 251 DCCKKNSF-DRLQSMVQSIIAQGYPVSQVISQLFDYVLTTKDLNQSQKSHITMKIGNVDR 309
Query: 334 RLSFGCNDKLQL 345
L G + LQL
Sbjct: 310 NLIDGSEEFLQL 321
>gi|219852692|ref|YP_002467124.1| replication factor C small subunit [Methanosphaerula palustris
E1-9c]
gi|219546951|gb|ACL17401.1| Replication factor C [Methanosphaerula palustris E1-9c]
Length = 326
Score = 228 bits (580), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 116/308 (37%), Positives = 180/308 (58%), Gaps = 3/308 (0%)
Query: 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 102
W+E+YRP LAD+ +I + + LPHLL G G GKT+ +A+AR+ +G
Sbjct: 9 WIERYRPTRLADIVGQDEITERLISYVKGRSLPHLLFTGSAGIGKTTAAVALAREFFGEA 68
Query: 103 YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALR 162
+H E+NASD+RGIDVVR QI+ FA T A K++ LDEADA+T DAQ ALR
Sbjct: 69 WHINFREMNASDERGIDVVRNQIKQFARTSPLE---GAEFKILFLDEADALTTDAQAALR 125
Query: 163 RVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTE 222
R +E Y++ RF L CN +KII +QSRC +RF PL P ++E + + EG+ VT
Sbjct: 126 RTMETYSRGCRFILSCNYSSKIIDPIQSRCAIYRFRPLTPEAISEEIGKIAGKEGITVTP 185
Query: 223 GGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESF 282
+ A+V + GDMRKA+N LQ + S+ I +E VY T + P +IE++ +L F
Sbjct: 186 DAIEAIVYIAQGDMRKAINALQGASIVSKSIDQEMVYAITSSARPDEIEELLGLILVGDF 245
Query: 283 ADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDK 342
+ + + +G+A +++ +V + M +++V L+ L + ++RLS G +
Sbjct: 246 EGAEAVLLALMHTRGIAPAELLGQVYRALSGRSMERELKVALIGHLGETDFRLSEGASPD 305
Query: 343 LQLGSIIS 350
LQ+ ++++
Sbjct: 306 LQMEALLA 313
>gi|20089555|ref|NP_615630.1| replication factor C small subunit [Methanosarcina acetivorans C2A]
gi|42559497|sp|Q8TSX5.1|RFCS_METAC RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|19914469|gb|AAM04110.1| replication factor C, small subunit [Methanosarcina acetivorans
C2A]
Length = 338
Score = 227 bits (579), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 120/330 (36%), Positives = 194/330 (58%), Gaps = 14/330 (4%)
Query: 38 IKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARK 97
IK W+EKYRP L VA + ++ + + LPHLL GPPG GKT++ +++AR+
Sbjct: 10 IKEEIWIEKYRPVRLNQVAGQDETIERLKSYVATKNLPHLLFSGPPGVGKTASAVSIARE 69
Query: 98 LYGAQ-YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKD 156
++G + ELNASD+RGID+VR +I++FA T A K++ LDEADA+T D
Sbjct: 70 IFGEDLWRENFTELNASDERGIDIVRNKIKNFAKTAPIG---GAPFKIIFLDEADALTAD 126
Query: 157 AQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAE 216
AQ ALRR +E+++ N RF L CN +KII +QSRC +RF L + ERL+++ +
Sbjct: 127 AQSALRRTMERFSSNCRFILSCNYSSKIIEPIQSRCAVYRFRRLSDEAIKERLEYIAGDQ 186
Query: 217 GLDVTEGGLAALVRLCNGDMRKALNILQSTHM--ASQQITEEAVYLCTGNPLPKDIEQIS 274
GL +TEGG AL+ + GDMRKA+N LQ+ + I+ E +Y T P++I+ +
Sbjct: 187 GLSITEGGYEALIYVAQGDMRKAVNSLQAAAFIDTDKSISRETIYRTTATANPEEIKNLI 246
Query: 275 YWLLNESFADSFKRISEMKMRKGLALVDIVREV--------TMFVFKIKMPSDVRVRLMN 326
L +F + K ++ + +GL+ DIV ++ + V + + V L++
Sbjct: 247 ETALRGNFRIARKELNRLLYEEGLSGEDIVGQIYRVVSEMDNLMVLDLGLTERDIVALVD 306
Query: 327 DLADIEYRLSFGCNDKLQLGSIISTFTQAR 356
+ + ++RL+ G ++K+QL ++++ F +R
Sbjct: 307 VIGETDFRLTEGASEKIQLEALLAHFALSR 336
>gi|226481347|emb|CAX73571.1| replication factor C [Schistosoma japonicum]
Length = 230
Score = 227 bits (578), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 118/256 (46%), Positives = 168/256 (65%), Gaps = 29/256 (11%)
Query: 106 MILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVI 165
M+LELNASDDRGID+VR+Q+ FAST++ G KLV+LDEAD+MTKDAQ ALRR+I
Sbjct: 1 MVLELNASDDRGIDIVREQVLSFASTKTLFAG---KFKLVILDEADSMTKDAQNALRRII 57
Query: 166 EKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGL 225
EK+T+NTRF LICN ++KIIPA+QSRCT+FRFAPL+ V L+ + EG+ +T+ G+
Sbjct: 58 EKFTENTRFCLICNYLSKIIPAIQSRCTKFRFAPLKFNDVNLCLRKIATNEGVTLTDDGV 117
Query: 226 AALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESFADS 285
A+ + +GDMRK++N+LQST M+S+ + +VY C P P +I + LLNE + +
Sbjct: 118 KAIYQFASGDMRKSINLLQSTSMSSKTVDGPSVYACVAYPSPDEIRSLLDHLLNEPISTA 177
Query: 286 FKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDKLQL 345
+ I +P +R L+ L+DIE+R+S G +++LQL
Sbjct: 178 --------------------------YHITLPDAIRCDLLIALSDIEHRMSQGASERLQL 211
Query: 346 GSIISTFTQARSAIVA 361
G+ IS FT+A+ A+ A
Sbjct: 212 GAFISAFTRAKVALEA 227
>gi|88602285|ref|YP_502463.1| replication factor C small subunit [Methanospirillum hungatei JF-1]
gi|110287812|sp|Q2FQT9.1|RFCS_METHJ RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|88187747|gb|ABD40744.1| replication factor C small subunit [Methanospirillum hungatei JF-1]
Length = 323
Score = 227 bits (578), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 116/310 (37%), Positives = 184/310 (59%), Gaps = 3/310 (0%)
Query: 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 102
W+EKYRP+ L D+ ++I++ + ++ +PHLL G GTGKT+ +A+AR+ +G
Sbjct: 8 WIEKYRPRVLEDIIGQQEIIERLRSYVAKREMPHLLFTGNAGTGKTTAAVALAREFFGED 67
Query: 103 YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALR 162
+ ELNASD+RGIDVVR QI+ FA T F ++ K++ LDEADA+T DAQ ALR
Sbjct: 68 WQMNFRELNASDERGIDVVRNQIKQFARTSPFG---GSTFKILFLDEADALTTDAQSALR 124
Query: 163 RVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTE 222
R +E Y + RF L CN KII +QSRC +RF PL V+E +K + + L VTE
Sbjct: 125 RTMETYAQTCRFILSCNYSAKIIDPIQSRCAIYRFRPLGRQAVSEMVKRISADQNLTVTE 184
Query: 223 GGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESF 282
+ A+ + GDMRKA+N LQ + + I+ + ++ T P++I+ + L +F
Sbjct: 185 EVIDAIFYVAQGDMRKAINALQGAAILGRDISPDMIFAITATARPEEIDDLIDLSLAGNF 244
Query: 283 ADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDK 342
+ + + +G+A +++ ++ V K +P V+VRL++ L + ++RLS G
Sbjct: 245 LGAGSSLQALLHDRGIAPQELISQLYRAVVKRDLPEAVKVRLIDSLGETDFRLSEGAGSD 304
Query: 343 LQLGSIISTF 352
+Q+ S+I+ F
Sbjct: 305 IQMQSLIAKF 314
>gi|159041324|ref|YP_001540576.1| ATPase central domain-containing protein [Caldivirga maquilingensis
IC-167]
gi|157920159|gb|ABW01586.1| AAA ATPase central domain protein [Caldivirga maquilingensis
IC-167]
Length = 318
Score = 227 bits (578), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 123/311 (39%), Positives = 184/311 (59%), Gaps = 7/311 (2%)
Query: 44 VEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQY 103
+E++RP L D+ + + LPHLL YGPPG GKT+ LA+AR+LYG +
Sbjct: 1 MERFRPVRLVDLVDQEGVKVGLMEFVRRGDLPHLLFYGPPGVGKTTAALALARELYGDSW 60
Query: 104 HNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRR 163
+ +LELNASD+RGIDV+R+++++FA T KLV+LDEAD MT DAQ ALRR
Sbjct: 61 RSSVLELNASDERGIDVIREKVKEFARTIPTG---PVPFKLVILDEADNMTSDAQQALRR 117
Query: 164 VIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEG 223
++E Y TRF L+ N ++ II +QSRC FRF PL V ERL+ + + G++VTE
Sbjct: 118 IMEMYASTTRFILLANYISGIIEPIQSRCAIFRFNPLPKEAVIERLRQIAKETGVEVTED 177
Query: 224 GLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESFA 283
GL A+ + GDMRKA+N LQ+T ++++ E AVY G P+++ + Y LN F
Sbjct: 178 GLEAIWEVSQGDMRKAINTLQTTTTTNKKVDENAVYQLFGGINPQEVRDLIYEALNGDFG 237
Query: 284 DSFKRISEMKMRKGLALVDIV----REVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGC 339
+ + M +G+ + I+ REVT V KI P ++ R++ +A + + G
Sbjct: 238 KAIMGLKSMIRDRGVDPIYIIRLLHREVTSTVSKINAPEYLKPRIIYSIAMRHHAILRGS 297
Query: 340 NDKLQLGSIIS 350
+D Q+ +++
Sbjct: 298 DDLTQVIGLLA 308
>gi|308485377|ref|XP_003104887.1| CRE-RFC-2 protein [Caenorhabditis remanei]
gi|308257208|gb|EFP01161.1| CRE-RFC-2 protein [Caenorhabditis remanei]
Length = 329
Score = 226 bits (577), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 123/315 (39%), Positives = 193/315 (61%), Gaps = 9/315 (2%)
Query: 41 SPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYG 100
+PWVEKYRPQ L+D+ + ++V ++ + E +P+++L GPPG GKT+++ A+AR+L G
Sbjct: 10 APWVEKYRPQVLSDIVGNENMVSRLEVIAKEGNVPNIILSGPPGIGKTTSVWALARELLG 69
Query: 101 AQYHNMILELNASDDRGIDVVRQQIQDFASTQ-SFSFGVKASVKLVLLDEADAMTKDAQF 159
+ +LELNASD+RGIDVVR +I+ FA T+ + G K+++LDEAD+MT AQ
Sbjct: 70 DKVKEAVLELNASDERGIDVVRNRIKTFAQTKVTLPEGRH---KIIILDEADSMTDGAQQ 126
Query: 160 ALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLD 219
ALRR +E Y+K TRFAL CNQ KII +QSRC R+ L PV + R+K V +AE ++
Sbjct: 127 ALRRTMELYSKTTRFALACNQSEKIIEPIQSRCALLRYTKLSPVELLYRVKEVAKAESVN 186
Query: 220 VTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLN 279
+GGL A++ GDMR+ALN LQ+T A +++ +E V P P + ++ +
Sbjct: 187 YDDGGLEAILFTAQGDMRQALNNLQATVNAYERVNKENVLKVCDEPHPDLMIKMLLYCTE 246
Query: 280 ESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDV----RVRLMNDLADIEYRL 335
+ F ++ K I E R G + DI+ + V +++ +V R++ + ++ R+
Sbjct: 247 KKFFEAAKIIHEFH-RLGFSSDDILSTLFRVVKTVELSKNVSEQLRMQYIKEIGVCHMRV 305
Query: 336 SFGCNDKLQLGSIIS 350
G KLQL +++
Sbjct: 306 VQGLTSKLQLSRLVA 320
>gi|327311922|ref|YP_004338819.1| replication factor C small subunit [Thermoproteus uzoniensis
768-20]
gi|326948401|gb|AEA13507.1| replication factor C small subunit [Thermoproteus uzoniensis
768-20]
Length = 322
Score = 226 bits (577), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 117/308 (37%), Positives = 179/308 (58%), Gaps = 3/308 (0%)
Query: 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 102
W EKYRP+S +V ++ + +PHLL YGPPGTGKT+ L +AR+LYG
Sbjct: 6 WFEKYRPRSFEEVVDLEEVKARLKEFVKAGNMPHLLFYGPPGTGKTTMALVLARELYGDA 65
Query: 103 YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALR 162
+ LELNASD+RGI+V+R+++++FA T KA KLV+LDEAD MT DAQ ALR
Sbjct: 66 WRENTLELNASDERGINVIRERVKEFARTAPVG---KAPFKLVILDEADNMTSDAQQALR 122
Query: 163 RVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTE 222
R++E Y TRF L+ N V+ II +QSRC FRF+PL V RL+ + E EG+ +++
Sbjct: 123 RIMEMYANTTRFILLANYVSGIIEPIQSRCAIFRFSPLPKEAVLSRLRFIAEQEGVKISQ 182
Query: 223 GGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESF 282
L A+ GDMR+A+ LQ ++ + EEAV G P + QI + SF
Sbjct: 183 EALDAIFDFTQGDMRRAITALQIASSMTKAVDEEAVAKALGYVSPSMLRQIIAEAIGGSF 242
Query: 283 ADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDK 342
+ + +I + G+ +++VR++ V ++ +P ++ L +++ Y + G N
Sbjct: 243 SKAMSQIYGLVADGGVGELELVRQIHREVLRLDVPEHLKPDLAFEVSKAHYAILRGANGL 302
Query: 343 LQLGSIIS 350
LQ+ +++
Sbjct: 303 LQIYGLLA 310
>gi|317575745|ref|NP_001187540.1| replication factor C subunit 4 [Ictalurus punctatus]
gi|308323307|gb|ADO28790.1| replication factor c subunit 4 [Ictalurus punctatus]
Length = 358
Score = 226 bits (577), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 137/356 (38%), Positives = 205/356 (57%), Gaps = 20/356 (5%)
Query: 12 FDEDENQNLKPKDNGKNVIVSGTPPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSE 71
F + Q +KP+ + SG K PWVEKYRP+ + +VA ++V + +
Sbjct: 4 FLKGSTQGVKPQKDKATASSSGENKRQKPVPWVEKYRPKCVDEVAFQEEVVAVLKKSLEG 63
Query: 72 NRLPHLLLYGPPGTGKTSTILAVARKLYGAQ-YHNMILELNASDDRGIDVVRQQIQDFAS 130
LP+LL YGPPGTGKTSTILA AR+LYG + Y +LELNASD+RGI V+R+++++FA
Sbjct: 64 ADLPNLLFYGPPGTGKTSTILAAARELYGPELYRQRVLELNASDERGIQVIREKVKNFA- 122
Query: 131 TQSFSFGVKAS------VKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKI 184
Q G + K+++LDEAD+MT AQ ALRR +EK ++ TRF LICN V++I
Sbjct: 123 -QLTVAGTRTDGKSCPPFKIIILDEADSMTGAAQAALRRTMEKESRTTRFCLICNYVSRI 181
Query: 185 IPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQ 244
I L SRC++FRF PL ERL + E L ++ G+ ALV++ GD+RKA+ +LQ
Sbjct: 182 IEPLTSRCSKFRFKPLTNEVQQERLLEICAKENLKYSKEGIDALVKVSEGDLRKAITLLQ 241
Query: 245 ST--HMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMR----KGL 298
ST A ++ITE V G PK IE LL + +F+++ E+ ++ +G
Sbjct: 242 STARFSAEKEITESLVIEIAGVVPPKVIEN----LLQTCYKGNFEKL-EVAVKNLVDEGY 296
Query: 299 ALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDKLQLGSIISTFTQ 354
A I+ + + + K+ + + +A ++ L G ++ LQL ++ S Q
Sbjct: 297 AATQILSQFHDVIIEEKLGDKQKSVITEKMAVVDKCLVDGADEYLQLLNLCSVIMQ 352
>gi|330845966|ref|XP_003294831.1| replication factor C subunit [Dictyostelium purpureum]
gi|325074630|gb|EGC28646.1| replication factor C subunit [Dictyostelium purpureum]
Length = 344
Score = 226 bits (577), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 125/315 (39%), Positives = 187/315 (59%), Gaps = 9/315 (2%)
Query: 39 KASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKL 98
++ PWV KYRP+++ DV+ D+V + + S LPHLL YGPPGTGKTSTILA+A +
Sbjct: 9 RSEPWVSKYRPKTMDDVSYQDDVVSALKKSLSTGNLPHLLFYGPPGTGKTSTILAIAMDI 68
Query: 99 YGAQY-HNMILELNASDDRGIDVVRQQIQDFAS-----TQSFSFGVKASVKLVLLDEADA 152
YG + +LELNASD+RGI++VR +I++FA T S A+ KL++LDEAD+
Sbjct: 69 YGPELIKQRVLELNASDERGIEIVRTKIKNFAGFTVNKTVSNGNNAGATFKLIILDEADS 128
Query: 153 MTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHV 212
MT DAQ ALRR IE +K TRF L+CN +++II L SRC +FRF PL+ ERLK++
Sbjct: 129 MTSDAQAALRRTIETTSKTTRFCLLCNYISRIIDPLASRCAKFRFKPLDSEATIERLKYI 188
Query: 213 IEAEGLDVTEGGLAALVRLCNGDMRKALNILQST-HMASQQITEEAVYLCTGNPLPKDIE 271
EG+ T+ A+ + +GDMRKA+ LQS ++TE+ +Y +G P I
Sbjct: 189 SIQEGIKCTDSVYQAIQTVSDGDMRKAITYLQSAFRFYGNKLTEDTIYNISGTLSPLIIT 248
Query: 272 QISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMN-DLAD 330
+ + SF D + + + +G + +V ++ FV +D + L++ + +
Sbjct: 249 SLIKSCKSNSFKD-LQSTVQSIISQGYPVSQVVSQLFDFVLSDSKFNDKQKSLISMKIGN 307
Query: 331 IEYRLSFGCNDKLQL 345
++ L G + LQL
Sbjct: 308 VDRNLIDGSEEFLQL 322
>gi|126458633|ref|YP_001054911.1| replication factor C small subunit [Pyrobaculum calidifontis JCM
11548]
gi|158513488|sp|A3MS28.1|RFCS_PYRCJ RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|126248354|gb|ABO07445.1| Replication factor C [Pyrobaculum calidifontis JCM 11548]
Length = 326
Score = 226 bits (576), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 118/304 (38%), Positives = 186/304 (61%), Gaps = 5/304 (1%)
Query: 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 102
W EKYRP+S +V ++ + LPHLL YGPPGTGKT+ L +AR+LYG
Sbjct: 6 WFEKYRPRSFEEVVDLEEVKARLREFVKAGNLPHLLFYGPPGTGKTTMALVLARELYGEY 65
Query: 103 YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALR 162
+ LELNASD+RGI V+R+++++FA T KA KLV+LDEAD MT DAQ ALR
Sbjct: 66 WRENTLELNASDERGIGVIRERVKEFARTAPVG---KAPFKLVILDEADNMTSDAQQALR 122
Query: 163 RVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHV-TERLKHVIEAEGLDVT 221
R++E Y +NTRF L+ N V++II + SRC FRF+P+ P H+ ERL+ + +EG+++
Sbjct: 123 RIMEIYAQNTRFILLANYVSRIIDPIISRCAVFRFSPM-PRHLMAERLREIARSEGVELK 181
Query: 222 EGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNES 281
+ + + + GDMRKA+N+LQ S+ + AV P D+ ++ +
Sbjct: 182 DDAIDLIYEISEGDMRKAINLLQVAAAVSKVVDANAVASAAAAVRPSDVLELFNLAMGGD 241
Query: 282 FADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCND 341
A + ++ E+ KG+A VD++R + ++++ DV+ + L++++YRL+ G ++
Sbjct: 242 LAKARDKLRELMYIKGVAGVDLIRVFQRELIRMQLDDDVKAEVAELLSEVDYRLTQGADE 301
Query: 342 KLQL 345
++QL
Sbjct: 302 EIQL 305
>gi|429965988|gb|ELA47985.1| hypothetical protein VCUG_00568 [Vavraia culicis 'floridensis']
Length = 304
Score = 226 bits (576), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 124/313 (39%), Positives = 193/313 (61%), Gaps = 24/313 (7%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
P VEKYRP +L +V + +++ + RL + LPH+LLYGPPGTGKT++I A+A+ LY
Sbjct: 5 PLVEKYRPSTLDEVLGNELVIEALKRLQEHDNLPHILLYGPPGTGKTTSIRAIAKFLYKQ 64
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFAL 161
+LELNASDDRGI+VVR+QI+ FA ++SF + KLV+LDEAD+M++DAQ AL
Sbjct: 65 TIMCNVLELNASDDRGINVVREQIKCFAVSRSF----QNKKKLVVLDEADSMSRDAQNAL 120
Query: 162 RRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVT 221
RRVIE Y+ N RF I N +KIIPA+QSRC++FRF+P+ + +R++H+ E E + +
Sbjct: 121 RRVIEDYSGNVRFCFIANYAHKIIPAIQSRCSKFRFSPVSSDAIKKRVRHISEMESIPID 180
Query: 222 EGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPK-DIEQISYWLLNE 280
+ + LV+ GDMR+ +N L IT + + LP+ D E+I
Sbjct: 181 DKCIDILVQESEGDMRRLVNTLDGLSRFKGAITVDMI-------LPEIDFERIFELSRGR 233
Query: 281 SFADS----FKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLS 336
FA++ +R+ E L V R +T ++ + K + + ++A+IE+R++
Sbjct: 234 RFAEAKAVVLERLEE------LDFVTFFRRLTCYIRESKKFENYDI--YEEIAEIEHRIA 285
Query: 337 FGCNDKLQLGSII 349
GC++K+Q+ ++
Sbjct: 286 VGCSEKIQVSCLV 298
>gi|308322095|gb|ADO28185.1| replication factor c subunit 4 [Ictalurus furcatus]
Length = 358
Score = 226 bits (576), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 137/356 (38%), Positives = 205/356 (57%), Gaps = 20/356 (5%)
Query: 12 FDEDENQNLKPKDNGKNVIVSGTPPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSE 71
F + Q +KP+ + SG K PWVEKYRP+ + +VA ++V + +
Sbjct: 4 FLKGSTQGVKPQKDKATASSSGENKRQKPVPWVEKYRPKCVDEVAFQEEVVAVLKKSLEG 63
Query: 72 NRLPHLLLYGPPGTGKTSTILAVARKLYGAQ-YHNMILELNASDDRGIDVVRQQIQDFAS 130
LP+LL YGPPGTGKTSTILA AR+LYG + Y +LELNASD+RGI V+R+++++FA
Sbjct: 64 ADLPNLLFYGPPGTGKTSTILAAARELYGPELYRQRVLELNASDERGIQVIREKVKNFA- 122
Query: 131 TQSFSFGVKAS------VKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKI 184
Q G + K+++LDEAD+MT AQ ALRR +EK ++ TRF LICN V++I
Sbjct: 123 -QLTVAGTRTDGKSCPPFKIIILDEADSMTGAAQAALRRTMEKESRTTRFCLICNYVSRI 181
Query: 185 IPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQ 244
I L SRC++FRF PL ERL + E L ++ G+ ALV++ GD+RKA+ +LQ
Sbjct: 182 IEPLTSRCSKFRFKPLTNEVQQERLLEICAKENLKYSKEGIDALVKVSEGDLRKAITLLQ 241
Query: 245 STHM--ASQQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMR----KGL 298
ST A ++ITE V G PK IE LL + +F+++ E+ ++ +G
Sbjct: 242 STARFGAEKEITESLVIEIAGVVPPKVIEN----LLQTCYKGNFEKL-EVAVKNLVDEGY 296
Query: 299 ALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDKLQLGSIISTFTQ 354
A I+ + + + K+ + + +A ++ L G ++ LQL ++ S Q
Sbjct: 297 AATQILSQFHDVIIEEKLGDKQKSVITEKMAVVDKCLVDGADEYLQLLNLCSVIMQ 352
>gi|328870657|gb|EGG19030.1| replication factor C subunit [Dictyostelium fasciculatum]
Length = 358
Score = 226 bits (576), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 135/344 (39%), Positives = 200/344 (58%), Gaps = 28/344 (8%)
Query: 23 KDNGKNVIVSGTPPDIKAS-------PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLP 75
K GKN S + P I + PWV KYRP+++ DVA ++V + + LP
Sbjct: 5 KSTGKNT--SNSAPSIGSGGIQKAPEPWVSKYRPRTVDDVAHQDEVVRALKKSLDGGALP 62
Query: 76 HLLLYGPPGTGKTSTILAVARKLYGAQY-HNMILELNASDDRGIDVVRQQIQDFASTQSF 134
HLL YGPPGTGKTSTILA+A LYG + +LELNASD+RGI++VR +I++FAS
Sbjct: 63 HLLFYGPPGTGKTSTILAIAMDLYGPDLIKDRVLELNASDERGIEIVRTKIKNFASFTVN 122
Query: 135 SFGVKA----SVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQS 190
+ V S KL++LDEAD+MT+DAQ ALRR IE +K TRF L+CN + +II L S
Sbjct: 123 NTTVAGKQVPSFKLIILDEADSMTQDAQAALRRTIENTSKTTRFCLLCNYITRIIEPLSS 182
Query: 191 RCTRFRFAPLEPVHVTERLKHVIEAEGLDV-TEGGLAALVRLCNGDMRKALNILQSTH-- 247
RC +FRF PL+ + ERLK++ + EG+++ E L A+ + GDMRKA+ +QS H
Sbjct: 183 RCAKFRFKPLKSEAMGERLKYIADQEGVNLANESTLDAIHTVSQGDMRKAITFMQSAHRF 242
Query: 248 MASQQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREV 307
AS+ IT+ +Y +G+ PK +E +N + F ++ + + + +AL ++
Sbjct: 243 YASKSITDANIYDISGSVEPKTLE----LFINSCKSGDFYKVRHL-VERVMALGYPASQI 297
Query: 308 TMFVFKIKMPSDV------RVRLMNDLADIEYRLSFGCNDKLQL 345
+F I + + R ++ + I+ L G ++ LQL
Sbjct: 298 ISQLFDIVVQPSIHFNNIQRTKIAIKIGQIDRNLVDGSDEFLQL 341
>gi|301117462|ref|XP_002906459.1| replication factor C subunit 4 [Phytophthora infestans T30-4]
gi|262107808|gb|EEY65860.1| replication factor C subunit 4 [Phytophthora infestans T30-4]
Length = 339
Score = 225 bits (574), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 123/314 (39%), Positives = 192/314 (61%), Gaps = 6/314 (1%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP+++ +++ +V T+ + +LPHLL YGPPGTGKTSTI+AV R+L+G
Sbjct: 18 PWVEKYRPKNVDEISHQEHVVATLKTSIANGQLPHLLFYGPPGTGKTSTIVAVGRQLFGP 77
Query: 102 QY--HNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQF 159
+ + LELNASDDRGI VVR++++ FA S K+++LDEAD+MT DAQ
Sbjct: 78 DFRKNGRFLELNASDDRGIKVVREKVKSFAQGAISSASGLPPFKIIVLDEADSMTGDAQS 137
Query: 160 ALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLD 219
ALRR++E Y+K TRF LICN V++II + SRC +FRFAPLE + + R++ + E +D
Sbjct: 138 ALRRMMENYSKVTRFCLICNYVSRIIEPVASRCAKFRFAPLEKISMASRVRFIASEERVD 197
Query: 220 VTEGGLAALVRLCNGDMRKALNILQSTHM--ASQQITEEAVYLCTGNPLPKDIEQISYWL 277
V++ L +L+ GD+RKA+N LQS +++++ V G P+ ++Q +
Sbjct: 198 VSDSVLESLLECSTGDLRKAINYLQSAKQLCGDDELSQDDVIAVAGLAPPELLQQFWVSV 257
Query: 278 LNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDV-RVRLMNDLADIEYRLS 336
+ SF + K E + G ++ I+R++ V + +DV + ++ +A + RL
Sbjct: 258 TSNSF-EKMKTDIESILLAGYPVLTILRQLNDDVLALDKLNDVQKAQICLRIAGADKRLV 316
Query: 337 FGCNDKLQLGSIIS 350
G ++ QL + S
Sbjct: 317 DGASEHFQLLDVAS 330
>gi|170290625|ref|YP_001737441.1| DNA replication ATPase HolB small subunit [Candidatus Korarchaeum
cryptofilum OPF8]
gi|170174705|gb|ACB07758.1| ATPase involved in DNA replication HolB, small subunit [Candidatus
Korarchaeum cryptofilum OPF8]
Length = 331
Score = 225 bits (573), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 116/315 (36%), Positives = 185/315 (58%), Gaps = 6/315 (1%)
Query: 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 102
WVEKYRP++L DV DI+ + + +PHLL GP GTGKT+T LA+A LY ++
Sbjct: 6 WVEKYRPKTLDDVVGQDDIIRALKGFVEKRSMPHLLFAGPAGTGKTTTALALANDLYKSE 65
Query: 103 --YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFA 160
LELNASD+RGID +R +I+DFA T F + K++ LDEAD +T DAQ A
Sbjct: 66 ELVAANYLELNASDERGIDTIRTKIKDFAKTAPFG---EVPFKIIHLDEADNLTADAQQA 122
Query: 161 LRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDV 220
LRR++E Y+ TRF CN +KII +QSRC FRF P+ + RL + E EGL
Sbjct: 123 LRRIMEMYSATTRFIFACNYSSKIIEPIQSRCAVFRFGPIPEEAIKNRLIMIAEREGLKY 182
Query: 221 TEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNE 280
TE G++A++ + GD+RKA+N+LQ+ + + + VY G P+++ + L
Sbjct: 183 TEDGISAIIYVAEGDLRKAINLLQTASAMASTVDSKVVYRVAGLAHPEEVRAMINSALKG 242
Query: 281 SFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDV-RVRLMNDLADIEYRLSFGC 339
F + + + + + G++ D++R++ + K SD + LM L+++++R++ G
Sbjct: 243 KFLSAREALRNLMINYGMSAQDVIRQLNREIMASKSLSDKEKAMLMIFLSEVDFRVTEGA 302
Query: 340 NDKLQLGSIISTFTQ 354
+ +QL ++++ +
Sbjct: 303 HGDVQLAAMLAKLVE 317
>gi|406603613|emb|CCH44868.1| Replication factor C small subunit [Wickerhamomyces ciferrii]
Length = 256
Score = 224 bits (571), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 120/254 (47%), Positives = 167/254 (65%), Gaps = 8/254 (3%)
Query: 106 MILELNASDDRGIDVVRQQIQDFAST-QSFSFGVKASVKLVLLDEADAMTKDAQFALRRV 164
M+LELNASDDRGIDVVR QI++FAST Q FS G K L++LDEADAMT AQ ALRR+
Sbjct: 1 MVLELNASDDRGIDVVRNQIKNFASTMQIFSKGYK----LIILDEADAMTNVAQNALRRI 56
Query: 165 IEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGG 224
IEKYTKNTRF ++ N +K+ PAL SRCTRFRF+PL + E L +I E L +T
Sbjct: 57 IEKYTKNTRFCILANYAHKLNPALLSRCTRFRFSPLTESSIQENLNKIIIKEQLKLTNDA 116
Query: 225 LAALVRLCNGDMRKALNILQSTHMA---SQQITEEAVYLCTGNPLPKDIEQISYWLLNES 281
AAL++L GDMRKALN+LQ+ A +I+EE +Y G P PKDIE I +L +
Sbjct: 117 QAALLKLSKGDMRKALNVLQACKAAIDEGNEISEEMIYESVGAPHPKDIETILDSILKDD 176
Query: 282 FADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCND 341
++ S ++++K KGLAL+D+++ + + ++ + R ++ L +IEY +S G N+
Sbjct: 177 WSSSISTLTKIKQLKGLALIDLLQGFVEILDQYQLKTRTRAEILKGLGEIEYAISKGGNE 236
Query: 342 KLQLGSIISTFTQA 355
K+Q + I ++
Sbjct: 237 KIQSSASIGVIKKS 250
>gi|123399546|ref|XP_001301493.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121882680|gb|EAX88563.1| hypothetical protein TVAG_409150 [Trichomonas vaginalis G3]
Length = 324
Score = 224 bits (570), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 121/316 (38%), Positives = 192/316 (60%), Gaps = 6/316 (1%)
Query: 39 KASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKL 98
++ PWVEKYRP+ L DV + +++ + L +E +P+L+L GPPG GKT+++LA+ +L
Sbjct: 3 QSQPWVEKYRPRVLDDVVGNTAVIERLRALAAEGNIPNLILTGPPGCGKTTSLLALCHQL 62
Query: 99 YGAQYHNMILELNASDDRGIDVVRQQIQDFASTQ-SFSFGVKASVKLVLLDEADAMTKDA 157
G + + ++ELNASDDRGIDVVR+ I++FA + G K+VLLDE+D+MT A
Sbjct: 63 LGDKEKDAVIELNASDDRGIDVVRKNIKEFAKRHVALPEGRH---KVVLLDESDSMTDAA 119
Query: 158 QFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEG 217
Q A+RR++E YTK TRF CNQ K+I +QSRC RF+ +E + RL + E EG
Sbjct: 120 QQAMRRIMENYTKTTRFVFACNQSEKVIEPIQSRCAIVRFSRVEENEIAARLMKICELEG 179
Query: 218 LDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWL 277
G+A L RL +GDMR A+N LQST++ +T+E V P P I I L
Sbjct: 180 FKPESEGIATLARLADGDMRTAINGLQSTYVRYGLVTQENVLATVDIPNPTAIADIFTAL 239
Query: 278 LNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKI-KMPSDVRVRLMNDLADIEYRLS 336
++F ++ ++ ++ ++G + DIV+ + FV + + +++ L+ ++ + R+S
Sbjct: 240 STDNFRNALIILNGLE-KRGHSPSDIVKSLFSFVRRTDTIQEKLKLNLLKEIGLAQMRVS 298
Query: 337 FGCNDKLQLGSIISTF 352
G + LQL +++T
Sbjct: 299 QGMSSNLQLDGLLATL 314
>gi|307595017|ref|YP_003901334.1| replication factor C [Vulcanisaeta distributa DSM 14429]
gi|307550218|gb|ADN50283.1| Replication factor C [Vulcanisaeta distributa DSM 14429]
Length = 327
Score = 224 bits (570), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 117/307 (38%), Positives = 181/307 (58%), Gaps = 7/307 (2%)
Query: 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 102
WVEKYRP + D+ + + + + +PHLL +GPPGTGKT+ LA+AR+LYG
Sbjct: 8 WVEKYRPSRIDDIIDQDHVKARVKEMLANGNIPHLLFFGPPGTGKTTMALAIARELYGDA 67
Query: 103 YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALR 162
+ +LELNASD+RGI ++R+++++FA T VKA +L++LDEAD MT DAQ ALR
Sbjct: 68 WRENVLELNASDERGIAMIREKVKEFAKTMPT---VKAPFRLIILDEADNMTPDAQQALR 124
Query: 163 RVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTE 222
R++E YT + RF L+ N + II +QSRC+ FRF+PL V RL+ + EG+ VT+
Sbjct: 125 RIMEMYTTSVRFILLANYPSGIIEPIQSRCSLFRFSPLPKDAVLGRLREIASKEGVKVTD 184
Query: 223 GGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESF 282
L A+ + GDMRKA+N LQ+ + EE VY G P + I + F
Sbjct: 185 DALEAIWDVSQGDMRKAINTLQAAASLGGVVDEEVVYKALGKVSPTKVRTIVTEAVVGDF 244
Query: 283 ADSFKRISEMKMRKGLALVDIV----REVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFG 338
+ + + + +G +DI+ REV ++K+P +++ + + +++ YRL G
Sbjct: 245 GKAVREVMSLIRDEGADPLDIIKIIHREVVSAASQLKVPEELKPKAVYIVSEHHYRLLRG 304
Query: 339 CNDKLQL 345
+ +LQ+
Sbjct: 305 SSGELQV 311
>gi|374628354|ref|ZP_09700739.1| replication factor C small subunit [Methanoplanus limicola DSM
2279]
gi|373906467|gb|EHQ34571.1| replication factor C small subunit [Methanoplanus limicola DSM
2279]
Length = 325
Score = 224 bits (570), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 117/320 (36%), Positives = 192/320 (60%), Gaps = 9/320 (2%)
Query: 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 102
W+EKYRP+ L DV ++IV + LPHLL G G GKT++ +A+A++ YG
Sbjct: 8 WIEKYRPKRLDDVVGQKEIVSRLKSYVKTKSLPHLLFTGTAGIGKTTSAVALAKEFYGEH 67
Query: 103 YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALR 162
++ E+NASD+RGIDVVR QI+ FA T A K++ LDEADA+T DAQ ALR
Sbjct: 68 WNVNFREMNASDERGIDVVRNQIKQFARTAPIG---GAEFKILFLDEADALTNDAQAALR 124
Query: 163 RVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTE 222
R +E Y + RF L CN +KII +QSRC +RF PL+ +TE L H+ E EGL ++E
Sbjct: 125 RTMENYARTCRFILSCNYSSKIIDPIQSRCAIYRFRPLDREAITEELMHIAENEGLTLSE 184
Query: 223 GGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESF 282
++A++ + GDMRKA+N LQ + +I EE ++ T P +I ++ ++ F
Sbjct: 185 DAISAIIYVSAGDMRKAINALQGAAIIDPEIKEEMIFEITSTAKPDEILELLEIIIEADF 244
Query: 283 ADSFKRISEMKMRKGLALVDIVREVTMFVFKIK-MPSDVRVRLMNDLADIEYRLSFGCND 341
+ ++ E+ +++G+A +++ ++ + K + ++++ +++ L + ++R+S G +
Sbjct: 245 DGAGHKLDELTVKRGIAPNELINQLYRTIVSHKTIGRELKLEMISHLGETDFRISEGSDP 304
Query: 342 KLQLGSIISTFTQARSAIVA 361
+Q+ ++I ARS I A
Sbjct: 305 GIQMEALI-----ARSVISA 319
>gi|115655395|ref|XP_790650.2| PREDICTED: replication factor C subunit 2-like [Strongylocentrotus
purpuratus]
Length = 352
Score = 223 bits (569), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 124/358 (34%), Positives = 199/358 (55%), Gaps = 11/358 (3%)
Query: 1 MAEAETVSLMDFDEDENQNLKPKDNGKNVIVSGTPPDIKASPWVEKYRPQSLADVAAHRD 60
M E E+ +D +++K +GK+ PWVEKYRP SL+DV + +
Sbjct: 1 MDEIESSPAVDLKSKSGESVKAGGSGKSASYE--------MPWVEKYRPTSLSDVVGNEE 52
Query: 61 IVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDV 120
V ++ + E +P++++ GPPGTGKT++IL +AR + GA + + +LE+NAS++RGIDV
Sbjct: 53 TVSRLEVFSREGNVPNVIIAGPPGTGKTTSILCLARTMLGASFKDAVLEMNASNERGIDV 112
Query: 121 VRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQ 180
VR +I+ FA Q K K+++LDEAD+MT AQ A+RR +E ++K TRFAL CN
Sbjct: 113 VRNKIKMFA--QKKVTLPKGRHKIIILDEADSMTGAAQQAMRRTMEVFSKTTRFALACNA 170
Query: 181 VNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKAL 240
+KII +QSRC R++ L + +RL + AE +D E GL A++ GDMR+A+
Sbjct: 171 SDKIIEPIQSRCAVLRYSRLSDSQILKRLLEICAAENVDHAEDGLEAIIYTAQGDMRQAI 230
Query: 241 NILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLAL 300
N LQST+ IT E V+ P P+ I+ + + +++ + M G +
Sbjct: 231 NNLQSTYAGFGSITSENVFKVCDEPHPQLIKSMLDHCVEADIDKAYEIMHHMS-HMGYSA 289
Query: 301 VDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDKLQLGSIISTFTQARSA 358
DI+ + +M V++ + ++ R++ G N LQL +++ Q +A
Sbjct: 290 DDIITNIFRSCKTHQMAEYVKLEFIKEIGMTHMRIAEGVNSILQLSGLLARLCQKTAA 347
>gi|311977891|ref|YP_003987011.1| putative replication factor C small subunit [Acanthamoeba polyphaga
mimivirus]
gi|81999791|sp|Q5UP47.1|RFCS3_MIMIV RecName: Full=Putative replication factor C small subunit L499;
Short=RFC small subunit L499; AltName: Full=Clamp loader
small subunit L499
gi|55417114|gb|AAV50764.1| putative replication factor C [Acanthamoeba polyphaga mimivirus]
gi|308204440|gb|ADO18241.1| putative replication factor C small subunit [Acanthamoeba polyphaga
mimivirus]
gi|339061437|gb|AEJ34741.1| putative replication factor C [Acanthamoeba polyphaga mimivirus]
gi|351737656|gb|AEQ60691.1| putative replication factor C small subunit [Acanthamoeba
castellanii mamavirus]
gi|398257325|gb|EJN40933.1| putative replication factor C [Acanthamoeba polyphaga
lentillevirus]
Length = 344
Score = 223 bits (569), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 121/313 (38%), Positives = 188/313 (60%), Gaps = 11/313 (3%)
Query: 30 IVSGTPPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTS 89
I S T P K PWVEKYRPQ + + ++RDI+ ++ + LPHLL +GP G+GKTS
Sbjct: 7 IASRTEPK-KQLPWVEKYRPQEIDHIISNRDIILSLKKFIESRTLPHLLFFGPSGSGKTS 65
Query: 90 TILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSF---GVKASVKLVL 146
TI AR++YG + MILELNAS++RGI+ VR +I++F S++S F GV+ KLV+
Sbjct: 66 TIKCCAREIYGKYINYMILELNASNERGIETVRTKIKNFVSSKSSIFLPMGVRDIFKLVI 125
Query: 147 LDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVT 206
LDE D+MT +AQ LR+ IEK + TRF LICN ++KI ALQSRC FRF+PL + +
Sbjct: 126 LDEIDSMTVEAQGMLRQTIEKNSGTTRFCLICNDIDKINIALQSRCASFRFSPLNELDMH 185
Query: 207 ERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMA-SQQITEEAVYLCTGNP 265
RL + EG+ + + +++++ GDMR A+N LQ ++ I E VY +G+
Sbjct: 186 GRLSDICRLEGVKYEKEAINSIIKISKGDMRSAINTLQHVNLVIGGSINTEDVYKISGHC 245
Query: 266 LPKDIEQISYWL--LNESFADSFKR----ISEMKMRKGLALVDIVREVTMFVFKIKMPSD 319
+P+ + + L LN++ S K+ I + + + +++ E+ V + K +
Sbjct: 246 MPEIVTDVFDILFSLNKNKTKSLKKSVNDIITIVTENNITIFNLLEELKNIVMESKFTTS 305
Query: 320 VRVRLMNDLADIE 332
++ L+++ A E
Sbjct: 306 QKIFLIDNFAKTE 318
>gi|21227923|ref|NP_633845.1| replication factor C small subunit [Methanosarcina mazei Go1]
gi|42559488|sp|Q8PVY4.1|RFCS_METMA RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|20906344|gb|AAM31517.1| replication factor C subunit [Methanosarcina mazei Go1]
Length = 338
Score = 223 bits (569), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 118/330 (35%), Positives = 194/330 (58%), Gaps = 14/330 (4%)
Query: 38 IKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARK 97
IK W+EKYRP L VA + ++ + + LPHLL GPPG GKT++ +++AR+
Sbjct: 10 IKEEIWIEKYRPVRLNQVAGQEETIERLMSYVATKNLPHLLFSGPPGVGKTASAVSIARE 69
Query: 98 LYGAQ-YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKD 156
++G + ELNASD+RGID+VR +I++FA T A K++ LDEADA+T D
Sbjct: 70 IFGEDLWRENFTELNASDERGIDIVRNKIKNFAKTAPMG---GAPFKIIFLDEADALTSD 126
Query: 157 AQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAE 216
AQ ALRR +EK++ N RF L CN +KII +QSRC +RF L + ERL+++ + +
Sbjct: 127 AQSALRRTMEKFSSNCRFILSCNYSSKIIEPIQSRCAVYRFRRLSDKAIRERLEYIAKEQ 186
Query: 217 GLDVTEGGLAALVRLCNGDMRKALNILQSTHM--ASQQITEEAVYLCTGNPLPKDIEQIS 274
L +T+GG AL+ + GDMRKA+N LQ+ + I+ E +Y T P++I+ +
Sbjct: 187 DLSITDGGYEALIYVAQGDMRKAVNSLQAAAFIDVEKPISRETIYRTTATANPEEIKNLI 246
Query: 275 YWLLNESFADSFKRISEMKMRKGLALVDIVREV--------TMFVFKIKMPSDVRVRLMN 326
L +F + K ++ + +GL+ DIV ++ + + + + V L++
Sbjct: 247 ETALRGNFRVARKELNRLLYEEGLSGEDIVGQIYRVVSEMDNLMILDLGLSERDIVGLVD 306
Query: 327 DLADIEYRLSFGCNDKLQLGSIISTFTQAR 356
+ + ++RL+ G ++K+QL ++++ F +R
Sbjct: 307 IIGETDFRLTEGASEKIQLEALLAHFALSR 336
>gi|326429974|gb|EGD75544.1| replication factor C 4 [Salpingoeca sp. ATCC 50818]
Length = 345
Score = 223 bits (569), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 136/334 (40%), Positives = 195/334 (58%), Gaps = 30/334 (8%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP++ ADVA ++ T+ S +PHLL YGPPGTGKTSTILA++R+L+G
Sbjct: 24 PWVEKYRPRTTADVAHQSQVIATLRATISGADMPHLLFYGPPGTGKTSTILALSRELFGP 83
Query: 102 Q-YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKA----SVKLVLLDEADAMTKD 156
Q +LELNASD+RGI VVR++I+ FAST S S GV K+++LDEADAMT
Sbjct: 84 QLMKERVLELNASDERGISVVREKIKTFAST-SVSKGVDGYPCPPFKIIILDEADAMTAA 142
Query: 157 AQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAE 216
AQ ALRR +EKY+ TRF LICN +++II L SRC +FRF PL + RL+H+ + E
Sbjct: 143 AQSALRRTMEKYSNVTRFCLICNYISRIIEPLASRCAKFRFKPLSRDTLVGRLQHIRDKE 202
Query: 217 GLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLP-KDIEQISY 275
+ ++ LA ++ L +GDMR+A+ LQS A LC + + +E+I+
Sbjct: 203 DVQCSDEVLARIIDLVDGDMRQAITFLQS-----------ASRLCGSSGVEVHHVEEIAG 251
Query: 276 WLLNESFAD--------SFKRISEMK---MRKGLALVDIVREVTMFVFKIKMPSDV-RVR 323
+ N D SF+ + E + G + IV E+ V + SD +
Sbjct: 252 AIPNAVMTDLLDKCRQGSFENLQETVQSILLDGFSADTIVEELLQLVVEADDISDTQKAD 311
Query: 324 LMNDLADIEYRLSFGCNDKLQLGSIISTFTQARS 357
+ + LA ++ RL G +++LQ+ + +T Q S
Sbjct: 312 IAHKLAQVDKRLVDGADEELQIMDLCATTMQVLS 345
>gi|45382983|ref|NP_990861.1| replication factor C subunit 2 [Gallus gallus]
gi|1703053|sp|P53033.1|RFC2_CHICK RecName: Full=Replication factor C subunit 2; AltName:
Full=Activator 1 40 kDa subunit; Short=A1 40 kDa
subunit; AltName: Full=Activator 1 subunit 2; AltName:
Full=Replication factor C 40 kDa subunit; Short=RF-C 40
kDa subunit; Short=RFC40
gi|527669|gb|AAA20552.1| replication factor C/activator 1 subunit [Gallus gallus]
Length = 359
Score = 223 bits (569), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 118/321 (36%), Positives = 187/321 (58%), Gaps = 3/321 (0%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP L +V + D V ++ E +P++++ GPPGTGKT++IL +AR L G
Sbjct: 42 PWVEKYRPLKLCEVVGNEDTVSRLEVFAKEGNVPNIIIAGPPGTGKTTSILCLARALLGP 101
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFAL 161
+ +LELNAS+DRGIDVVR +I+ FA Q + K K+++LDEAD+MT AQ AL
Sbjct: 102 ALKDAVLELNASNDRGIDVVRNKIKMFAQ-QKVTLP-KGRHKIIILDEADSMTDGAQQAL 159
Query: 162 RRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVT 221
RR +E Y+K TRFAL CN +KII +QSRC R+ L + RL ++E E + T
Sbjct: 160 RRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDSQILARLLKIVEKEDVPYT 219
Query: 222 EGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNES 281
+ GL A++ GDMR+ALN LQST+ I E V+ P P ++++ +N +
Sbjct: 220 DDGLEAIIFTAQGDMRQALNNLQSTYSGFGFINSENVFKVCDEPHPLLVKEMIQHCINAN 279
Query: 282 FADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCND 341
+++K ++ + R G + D++ + +MP +++ + ++ +++ G N
Sbjct: 280 IDEAYKILAHL-WRLGYSPEDVIGNIFRVCKTFQMPEYLKLEFIKEIGYTHMKIAEGVNS 338
Query: 342 KLQLGSIISTFTQARSAIVAA 362
LQ+ +++ Q +A A+
Sbjct: 339 LLQMAGLLARLCQKTAAPAAS 359
>gi|268576228|ref|XP_002643094.1| C. briggsae CBR-RFC-2 protein [Caenorhabditis briggsae]
Length = 328
Score = 223 bits (569), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 124/323 (38%), Positives = 195/323 (60%), Gaps = 9/323 (2%)
Query: 41 SPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYG 100
+PWVEKYRPQ LAD+ + +IV+ + + E +P+++L GPPG GKT+++ A+AR+L G
Sbjct: 10 APWVEKYRPQILADIVGNENIVERLKVIAKEGNVPNIILSGPPGCGKTTSVWALARELLG 69
Query: 101 AQYHNMILELNASDDRGIDVVRQQIQDFASTQ-SFSFGVKASVKLVLLDEADAMTKDAQF 159
+ + +LELNASD+RGIDVVR +I+ FA T+ + G K+++LDEAD+MT+ AQ
Sbjct: 70 DKVKDAVLELNASDERGIDVVRNRIKTFAQTRVTLPEGRH---KIIILDEADSMTEGAQQ 126
Query: 160 ALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLD 219
ALRR +E Y+K TRFAL CNQ KII +QSRC R+ L + R+ V +AE ++
Sbjct: 127 ALRRTMEIYSKTTRFALACNQSEKIIEPIQSRCALLRYTKLTAAELMSRVVEVAKAEDVN 186
Query: 220 VTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLN 279
+GGL A++ GDMR+ALN LQ+T A +Q+ +E V P P + ++ + ++
Sbjct: 187 HDDGGLEAILFTAQGDMRQALNNLQATVNAYEQVNKENVLKVCDEPHPDLMIKMLAYCVD 246
Query: 280 ESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDV----RVRLMNDLADIEYRL 335
F ++ K + E R G + DIV + V +++ V R + ++A R+
Sbjct: 247 GKFFEASKIVHEFH-RLGFSSDDIVSTLFRVVKTVELSKRVNEQLRQEFIREIAMCHMRI 305
Query: 336 SFGCNDKLQLGSIISTFTQARSA 358
G + KLQL +++ + ++
Sbjct: 306 IQGLSSKLQLSRLVADLCRVSAS 328
>gi|242822833|ref|XP_002487968.1| DNA replication factor C subunit Rfc2, putative [Talaromyces
stipitatus ATCC 10500]
gi|218712889|gb|EED12314.1| DNA replication factor C subunit Rfc2, putative [Talaromyces
stipitatus ATCC 10500]
Length = 393
Score = 223 bits (569), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 109/215 (50%), Positives = 150/215 (69%), Gaps = 11/215 (5%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYG- 100
PWVEKYRP+SL DVAA + R + LPH+L YGPPGTGKTSTILA+++ L+G
Sbjct: 40 PWVEKYRPKSLDDVAAQDHTTAVLQRTLQASNLPHMLFYGPPGTGKTSTILALSKSLFGP 99
Query: 101 AQYHNMILELNASDDRGIDVVRQQIQDFASTQ-SFSFGVKAS---------VKLVLLDEA 150
A Y ILELNASD+RGI++VR++I+DFA TQ S G+ A+ K+++LDEA
Sbjct: 100 ALYRTRILELNASDERGINIVREKIKDFARTQLSHPSGLDAAYKAKYPCPPFKIIILDEA 159
Query: 151 DAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLK 210
D+MT+DAQ ALRR +E+Y++ TRF L+CN V +II L SRC++FRF L+ V +R+
Sbjct: 160 DSMTQDAQSALRRTMEQYSRITRFCLVCNYVTRIIEPLASRCSKFRFKALDGVSAGDRIN 219
Query: 211 HVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQS 245
+ +AEGL + +G + L+R GD+R+A+ LQS
Sbjct: 220 EIAQAEGLTLDDGVVDTLIRCSEGDLRRAITYLQS 254
>gi|207341952|gb|EDZ69867.1| YNL290Wp-like protein [Saccharomyces cerevisiae AWRI1631]
Length = 181
Score = 223 bits (569), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 106/172 (61%), Positives = 131/172 (76%), Gaps = 5/172 (2%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP++L +V +++ T+ + E +LPHLL YGPPGTGKTSTI+A+AR++YG
Sbjct: 14 PWVEKYRPETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGK 73
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFAST-QSFSFGVKASVKLVLLDEADAMTKDAQFA 160
Y NM+LELNASDDRGIDVVR QI+DFAST Q FS G KL++LDEADAMT AQ A
Sbjct: 74 NYSNMVLELNASDDRGIDVVRNQIKDFASTRQIFSKG----FKLIILDEADAMTNAAQNA 129
Query: 161 LRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHV 212
LRRVIE+YTKNTRF ++ N +K+ PAL SRCTRFRF PL + R+ +V
Sbjct: 130 LRRVIERYTKNTRFCVLANYAHKLTPALLSRCTRFRFQPLPQEAIERRIANV 181
>gi|124485340|ref|YP_001029956.1| replication factor C small subunit [Methanocorpusculum labreanum Z]
gi|158512813|sp|A2SQT3.1|RFCS_METLZ RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|124362881|gb|ABN06689.1| replication factor C small subunit [Methanocorpusculum labreanum Z]
Length = 321
Score = 223 bits (569), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 113/320 (35%), Positives = 190/320 (59%), Gaps = 4/320 (1%)
Query: 37 DIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVAR 96
D+ W+EKYRP++LA+V +D+V+ + + LPHLL G G GKT+ +A+AR
Sbjct: 2 DVSPEIWIEKYRPKNLAEVVGQQDVVERLRSYVATKALPHLLFTGSAGVGKTTCAVALAR 61
Query: 97 KLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKD 156
+++G ++ ELNASD+RGIDVVR QI+ FA T A+ K++ LDEADA+T+D
Sbjct: 62 EMFGDTWNMNFRELNASDERGIDVVRNQIKQFARTAPLG---DATFKILFLDEADALTQD 118
Query: 157 AQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAE 216
AQ ALRR +E Y + RF L CN +KII +QSRC +RF PL ++E + + + E
Sbjct: 119 AQAALRRTMENYAETCRFILSCNYSSKIIDPIQSRCAIYRFRPLTDEAISEEIARIAKKE 178
Query: 217 GLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYW 276
G+ + EG A+ + GDMRKA+N LQ + S +T E +Y T N P++I +
Sbjct: 179 GITIDEGAYVAITYVSLGDMRKAINALQGAAIVSDHVTAENIYAITSNAKPQEITDLLAR 238
Query: 277 LLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIK-MPSDVRVRLMNDLADIEYRL 335
L F + + + + KG+A +++ ++ + + + + ++V L++ L + ++R+
Sbjct: 239 CLEGDFETAERMLHALMYDKGIAPNELLNQLYREISRSETLDRRLKVDLIDHLGEADFRM 298
Query: 336 SFGCNDKLQLGSIISTFTQA 355
S G + +Q+ ++++ ++
Sbjct: 299 SEGADADIQMDALLARIVRS 318
>gi|440493105|gb|ELQ75611.1| Replication factor C, subunit RFC5 [Trachipleistophora hominis]
Length = 325
Score = 223 bits (568), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 126/319 (39%), Positives = 192/319 (60%), Gaps = 16/319 (5%)
Query: 32 SGTPPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTI 91
S P + P VEKYRP +L +V + ++ + L + LPH+LLYGPPGTGKT++I
Sbjct: 16 SNLGPLMTIQPLVEKYRPSTLDEVLGNELVISALKSLQEHDNLPHILLYGPPGTGKTTSI 75
Query: 92 LAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEAD 151
A+A+ LY +LELNASDDRGI+VVR+QI+ FA +SF + KLV+LDEAD
Sbjct: 76 RAIAKFLYKHTIMCNVLELNASDDRGINVVREQIKSFAMCRSF----QNKKKLVILDEAD 131
Query: 152 AMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKH 211
+M++DAQ ALRRVIE Y+ N RF LI N +KIIPA+QSRC++FRF+P+ + ER+K
Sbjct: 132 SMSRDAQNALRRVIEDYSGNVRFCLIANYAHKIIPAIQSRCSKFRFSPVSSGLIKERVKS 191
Query: 212 VIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPK-DI 270
+ E E + + + + LV+ GDMR +N L +IT + LP+ D
Sbjct: 192 IAEMENIPIDDKCIDMLVQESEGDMRTLINTLDGLSQFKGKITANMI-------LPELDF 244
Query: 271 EQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLAD 330
E++ + + ++ I E K+ + L + R +T ++ + K V + +LA
Sbjct: 245 EKVFELSRAKKYVEAKMMILE-KLEE-LDFMTFFRRLTGYIRESK--KFVNYDIYEELAQ 300
Query: 331 IEYRLSFGCNDKLQLGSII 349
IE+R++ GC++K+Q+ ++
Sbjct: 301 IEHRIAVGCSEKIQIACLV 319
>gi|325969252|ref|YP_004245444.1| ATPase AAA [Vulcanisaeta moutnovskia 768-28]
gi|323708455|gb|ADY01942.1| AAA ATPase central domain protein [Vulcanisaeta moutnovskia 768-28]
Length = 327
Score = 223 bits (568), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 119/307 (38%), Positives = 181/307 (58%), Gaps = 7/307 (2%)
Query: 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 102
WVEKYRP + D+ + + + + +PHLL +GPPGTGKT+ LA+AR+LYG
Sbjct: 8 WVEKYRPSRIDDIIDQDHVKARVKEMLANGNIPHLLFFGPPGTGKTTMALAIARELYGDA 67
Query: 103 YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALR 162
+ +LELNASD+RGI ++R+++++FA T VKA +L++LDEAD MT DAQ ALR
Sbjct: 68 WRENVLELNASDERGIAMIREKVKEFAKTIPT---VKAPFRLIILDEADNMTPDAQQALR 124
Query: 163 RVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTE 222
R++E YT + RF L+ N + II +QSRC+ FRF+PL V RL+ + EG+ VT+
Sbjct: 125 RIMEMYTSSVRFILLANYSSGIIEPIQSRCSLFRFSPLPKDAVLGRLRDIASREGVKVTD 184
Query: 223 GGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESF 282
L A+ + GDMRKA+N LQ+ + EEAVY G P + I + F
Sbjct: 185 EALEAIWDISQGDMRKAINTLQAAASLGGVVDEEAVYKALGKVSPTRVRAIITEAVIGDF 244
Query: 283 ADSFKRISEMKMRKGLALVDIV----REVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFG 338
+ + K + +G +DI+ REV ++K+P +++ + + + + YRL G
Sbjct: 245 SKAVKEAMSLIRDEGADPLDIIKIAHREVASATSQLKVPEELKPKAIYIVGEHHYRLLRG 304
Query: 339 CNDKLQL 345
+ +LQ+
Sbjct: 305 SSGELQV 311
>gi|50290299|ref|XP_447581.1| hypothetical protein [Candida glabrata CBS 138]
gi|49526891|emb|CAG60518.1| unnamed protein product [Candida glabrata]
Length = 322
Score = 223 bits (568), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 123/319 (38%), Positives = 189/319 (59%), Gaps = 10/319 (3%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP L D+ + + V+ + ++ ++ +PH+++ G PG GKT++I +A ++ G
Sbjct: 11 PWVEKYRPHLLKDIVGNEETVERLQQIAADGNMPHMIISGLPGIGKTTSIHCLAHEMLGE 70
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFAL 161
Y +LELNASDDRGIDVVR QI+ FA + K K+++LDEAD+MT AQ AL
Sbjct: 71 SYSQAVLELNASDDRGIDVVRNQIKHFAQKKCHLPPGKH--KIIILDEADSMTAGAQQAL 128
Query: 162 RRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVT 221
RR +E Y+ +TRFA CNQ NKII LQSRC R++ L V +RL +I+AE + T
Sbjct: 129 RRTMELYSNSTRFAFACNQSNKIIEPLQSRCAILRYSKLSDEQVLKRLLEIIKAEDVQYT 188
Query: 222 EGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNES 281
GL A++ GDMR+A+N LQST + E V+ +P P ++++ LL E+
Sbjct: 189 NDGLEAIIFTAEGDMRQAINNLQSTVAGHGLVNGENVFKIVDSPHPLIVKKM---LLAET 245
Query: 282 FADSFKRISEMKMRKGLALVDIVR---EVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFG 338
+S + + KG + VDIV VT +F++K VR+ ++ ++ R+ G
Sbjct: 246 LDESIDCLRQELWAKGYSAVDIVTTCFRVTKNLFQLK--ESVRLEMIKEIGTTHMRILEG 303
Query: 339 CNDKLQLGSIISTFTQARS 357
+ LQL S+++ + ++
Sbjct: 304 VSTYLQLASMLAKIHKLKA 322
>gi|326931171|ref|XP_003211707.1| PREDICTED: replication factor C subunit 2-like [Meleagris
gallopavo]
Length = 360
Score = 223 bits (568), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 118/321 (36%), Positives = 187/321 (58%), Gaps = 3/321 (0%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP L +V + D V ++ E +P++++ GPPGTGKT++IL +AR L G
Sbjct: 43 PWVEKYRPLKLCEVVGNEDTVSRLEVFAKEGNVPNIIIAGPPGTGKTTSILCLARALLGP 102
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFAL 161
+ +LELNAS+DRGIDVVR +I+ FA Q + K K+++LDEAD+MT AQ AL
Sbjct: 103 ALKDAVLELNASNDRGIDVVRNKIKMFAQ-QKVTL-PKGRHKIIILDEADSMTDGAQQAL 160
Query: 162 RRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVT 221
RR +E Y+K TRFAL CN +KII +QSRC R+ L + RL ++E E + T
Sbjct: 161 RRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDSQILARLLKIVEKEDVPYT 220
Query: 222 EGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNES 281
+ GL A++ GDMR+ALN LQST+ I E V+ P P ++++ +N +
Sbjct: 221 DDGLEAIIFTAQGDMRQALNNLQSTYSGFGFINSENVFKVCDEPHPLLVKEMIQHCINAN 280
Query: 282 FADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCND 341
+++K ++ + R G + D++ + +MP +++ + ++ +++ G N
Sbjct: 281 IDEAYKILAHL-WRLGYSPEDVIGNIFRVCKTFQMPEYLKLEFIKEIGYTHMKIAEGVNS 339
Query: 342 KLQLGSIISTFTQARSAIVAA 362
LQ+ +++ Q +A A+
Sbjct: 340 LLQMAGLLARLCQKTAAPAAS 360
>gi|145353045|ref|XP_001420841.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144581076|gb|ABO99134.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 334
Score = 223 bits (568), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 126/319 (39%), Positives = 185/319 (57%), Gaps = 12/319 (3%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP++L D+ + D VD + + +P+L+ GPPG GKTS I +AR+L G
Sbjct: 2 PWVEKYRPKTLDDLVGNDDAVDRMRTMVRSGFMPNLIFSGPPGCGKTSAIGVLARELLGD 61
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQ-SFSFGVKASVKLVLLDEADAMTKDAQFA 160
+Y +LE+NASD+RGIDVVR +I+ FA + + + G KLV+LDEAD+MT AQ A
Sbjct: 62 KYKEAVLEMNASDERGIDVVRNKIKMFAQKKVTLAPG---RTKLVILDEADSMTTAAQQA 118
Query: 161 LRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDV 220
+RR +E Y+ TRFAL CN K+I +QSRC RF L V +RL V+EAE +
Sbjct: 119 MRRTMEIYSATTRFALACNTSEKVIEPIQSRCAIVRFGKLTDAQVLKRLMTVVEAEKVTY 178
Query: 221 TEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNE 280
GL A+V +GDMR+ALN LQST + + EE V+ P P + ++L
Sbjct: 179 VPKGLEAIVFTADGDMRQALNNLQSTALGFGMVNEENVFRVCDQPHPNIVRDAFSFILQG 238
Query: 281 SFADSFKRISEMKMRKGLALVDIVREVTMF-VFK----IKMPSDVRVRLMNDLADIEYRL 335
+ D++ R+ + +G ++ DI+ TM+ V K MP +++ L+ + RL
Sbjct: 239 NVDDAYARLKSLH-DQGYSVFDIIG--TMYRVCKNFDDTAMPEFIKLELIRIIGFTHLRL 295
Query: 336 SFGCNDKLQLGSIISTFTQ 354
S GC +Q+G ++ +
Sbjct: 296 SEGCATMIQIGGGVARMVE 314
>gi|212546601|ref|XP_002153454.1| DNA replication factor C subunit Rfc2, putative [Talaromyces
marneffei ATCC 18224]
gi|210064974|gb|EEA19069.1| DNA replication factor C subunit Rfc2, putative [Talaromyces
marneffei ATCC 18224]
Length = 394
Score = 223 bits (568), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 110/215 (51%), Positives = 148/215 (68%), Gaps = 11/215 (5%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP+SL DVAA + R + LPH+L YGPPGTGKTSTILA+A+ L+G
Sbjct: 40 PWVEKYRPKSLDDVAAQDHTTTVLQRTLQASNLPHMLFYGPPGTGKTSTILALAKSLFGP 99
Query: 102 Q-YHNMILELNASDDRGIDVVRQQIQDFASTQ-SFSFGVKAS---------VKLVLLDEA 150
Y ILELNASD+RGI++VR++I+DFA TQ S G+ A+ K+++LDEA
Sbjct: 100 TLYRTRILELNASDERGINIVREKIKDFARTQLSQPSGLDAAYREKYPCPPFKIIILDEA 159
Query: 151 DAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLK 210
D+MT+DAQ ALRR +E+Y++ TRF L+CN V +II L SRC++FRF L+ V +R+
Sbjct: 160 DSMTQDAQSALRRTMEQYSRITRFCLVCNYVTRIIEPLASRCSKFRFKALDGVSAGDRIS 219
Query: 211 HVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQS 245
+ AEGL + EG + L+R GD+R+A+ LQS
Sbjct: 220 EIAAAEGLTLDEGVVETLIRCSEGDLRRAITYLQS 254
>gi|348688417|gb|EGZ28231.1| hypothetical protein PHYSODRAFT_551952 [Phytophthora sojae]
Length = 339
Score = 223 bits (567), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 123/314 (39%), Positives = 192/314 (61%), Gaps = 6/314 (1%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP+++ +++ +V T+ + +LPHLL YGPPGTGKTSTI+AV R+L+G
Sbjct: 18 PWVEKYRPKNVDEISHQEHVVATLKTSIANGQLPHLLFYGPPGTGKTSTIVAVGRQLFGP 77
Query: 102 QY--HNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQF 159
+ + LELNASDDRGI VVR++++ FA S K+++LDEAD+MT DAQ
Sbjct: 78 DFRKNGRFLELNASDDRGIKVVREKVKSFAQGAISSASGLPPFKIIVLDEADSMTGDAQS 137
Query: 160 ALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLD 219
ALRR++E Y+K TRF LICN V++II + SRC +FRFAPLE + R++ + E ++
Sbjct: 138 ALRRMMENYSKVTRFCLICNYVSRIIEPVASRCAKFRFAPLERGSMASRVRFIASEEHVN 197
Query: 220 VTEGGLAALVRLCNGDMRKALNILQSTHM--ASQQITEEAVYLCTGNPLPKDIEQISYWL 277
V + L +L+ NGD+RKA+N LQS +++++ V G P+ ++Q +
Sbjct: 198 VPDPVLESLLECSNGDLRKAINYLQSAKQLCGDDELSQDDVIAVAGLAPPELLKQFWVSV 257
Query: 278 LNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDV-RVRLMNDLADIEYRLS 336
+ SF + K E + G ++ I+R++ V + +DV + ++ +A+ + RL
Sbjct: 258 ASNSF-EKMKTDIESILLAGYPVLTILRQLNDDVLALDKLNDVQKAKISLRIAEADKRLV 316
Query: 337 FGCNDKLQLGSIIS 350
G ++ QL + S
Sbjct: 317 DGASEHFQLLDVAS 330
>gi|340517381|gb|EGR47625.1| predicted protein [Trichoderma reesei QM6a]
Length = 351
Score = 223 bits (567), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 111/229 (48%), Positives = 154/229 (67%), Gaps = 8/229 (3%)
Query: 25 NGKNVIVSGTPPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPG 84
NG + P D++ PWVEKYRP+SL DV A V + R + LPH+L YGPPG
Sbjct: 16 NGTSSQKHDKPADVRVQPWVEKYRPKSLDDVTAQDHTVTVLQRTLQASNLPHMLFYGPPG 75
Query: 85 TGKTSTILAVARKLYGAQY-HNMILELNASDDRGIDVVRQQIQDFASTQSFS----FGVK 139
TGKTSTILA+A++LYG + + +LELNASD+RGI +VRQ+++DFA Q + + K
Sbjct: 76 TGKTSTILALAKELYGPEMIKSRVLELNASDERGISIVRQKVKDFARMQLTNPPPHYKDK 135
Query: 140 ---ASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFR 196
K+++LDEAD+MT+DAQ ALRR +E Y+K TRF LICN V +II L SRC++FR
Sbjct: 136 YPCPPFKIIILDEADSMTQDAQSALRRTMETYSKITRFCLICNYVTRIIDPLASRCSKFR 195
Query: 197 FAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQS 245
F L+ + +RL+ + EAEG+ + +G + L++ GD+RKA+ LQS
Sbjct: 196 FKSLDQGNAKKRLESIAEAEGVALEDGAVDTLIKCSEGDLRKAITYLQS 244
>gi|355571949|ref|ZP_09043157.1| Replication factor C small subunit [Methanolinea tarda NOBI-1]
gi|354825045|gb|EHF09280.1| Replication factor C small subunit [Methanolinea tarda NOBI-1]
Length = 321
Score = 223 bits (567), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 117/310 (37%), Positives = 175/310 (56%), Gaps = 3/310 (0%)
Query: 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 102
W+EKYRP LAD+ IV+ + LPHLL G G GKT+ +A+AR+ +
Sbjct: 8 WIEKYRPVRLADIVGQDQIVERLSSYVRTGNLPHLLFTGSAGVGKTTAAVALAREFFKDS 67
Query: 103 YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALR 162
+H ELNASD+RGIDVVR QI+ FA T A K++ LDEADA+T DAQ ALR
Sbjct: 68 WHMNFRELNASDERGIDVVRNQIKQFARTSPLG---GAGFKILFLDEADALTPDAQAALR 124
Query: 163 RVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTE 222
R +E Y RF L CN ++II +QSRC +RF L P +T+ + + E E L +T
Sbjct: 125 RTMESYASTCRFILSCNYSSRIIDPIQSRCAIYRFRSLSPEAITKEILRIAENEKLTITG 184
Query: 223 GGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESF 282
+ A++ + GDMRKA+N LQ + S +IT + VY T P +IE + L+ F
Sbjct: 185 EAIDAIIEIAQGDMRKAINALQGAAILSPEITGDMVYAITATARPDEIEDLLSTSLSGDF 244
Query: 283 ADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDK 342
+ + + +G+A +++ + + + M D+RV L++ L ++RLS G +
Sbjct: 245 EGATAILHRLLNDRGIAPNELINQCYRALTRRDMEEDMRVALIDQLGTTDFRLSEGASSD 304
Query: 343 LQLGSIISTF 352
+Q+ ++I+ F
Sbjct: 305 IQMEAMIARF 314
>gi|116753581|ref|YP_842699.1| replication factor C small subunit [Methanosaeta thermophila PT]
gi|116665032|gb|ABK14059.1| replication factor C small subunit [Methanosaeta thermophila PT]
Length = 305
Score = 221 bits (564), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 106/291 (36%), Positives = 181/291 (62%), Gaps = 3/291 (1%)
Query: 60 DIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGID 119
+IV + + LPHLL GPPG GKT+ +++ R+++G + + +ELNASD+RGID
Sbjct: 5 EIVRRLKSYVATRNLPHLLFSGPPGVGKTAAAISIVREIFGEGWRDNFIELNASDERGID 64
Query: 120 VVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICN 179
VVR +++DFA A K++ LDEADA+T DAQ ALRR +E+Y+ RF L CN
Sbjct: 65 VVRTKVKDFARMAPLG---GAEFKVIFLDEADALTSDAQSALRRTMERYSATCRFILSCN 121
Query: 180 QVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKA 239
+KII +QSRC +RF L P + +R++++ E EG++VTE G+ A+ + GDMRKA
Sbjct: 122 YSSKIIEPIQSRCAVYRFRALTPDAIEKRIRYIAEQEGVEVTEDGIEAINYVARGDMRKA 181
Query: 240 LNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLA 299
+N LQ+ + S ++ +Y T P+ I + ++ FA + + ++ + +GL+
Sbjct: 182 INALQAAALISDKVDMNTIYQITSMARPEQIRNLIKMAISGDFAGARNELDDLLLVQGLS 241
Query: 300 LVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDKLQLGSIIS 350
D+V ++ + + +P +VR++N + +I++R++ G N+++QL ++I+
Sbjct: 242 GQDVVVQIHREMLDLDVPDADKVRMINRIGEIDFRITEGANERIQLEALIA 292
>gi|350296832|gb|EGZ77809.1| activator 1 41 kDa subunit [Neurospora tetrasperma FGSC 2509]
Length = 387
Score = 221 bits (564), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 114/234 (48%), Positives = 157/234 (67%), Gaps = 15/234 (6%)
Query: 27 KNVIVSGTP-PD------IKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLL 79
K SGTP P+ +A PWVEKYRP++L+DV A + + R + LPH+L
Sbjct: 11 KAAAASGTPNPEKQTKETPRAQPWVEKYRPKTLSDVTAQDHTITVLQRTLQASNLPHMLF 70
Query: 80 YGPPGTGKTSTILAVARKLYGAQY-HNMILELNASDDRGIDVVRQQIQDFASTQ--SFSF 136
YGPPGTGKTSTILA+A++LYG + +LELNASD+RGI +VR++++DFA Q + S
Sbjct: 71 YGPPGTGKTSTILALAKELYGPELIKARVLELNASDERGISIVREKVKDFARMQLTNPSA 130
Query: 137 GVKA-----SVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSR 191
KA KL++LDEAD+MT+DAQ ALRR +E Y+K TRF LICN V +II L SR
Sbjct: 131 AYKARYPCPPFKLIILDEADSMTQDAQSALRRTMETYSKITRFCLICNYVTRIIDPLASR 190
Query: 192 CTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQS 245
C++FRF L+ + +RL+ + + EG+ + EG + AL++ GD+RKA+ LQS
Sbjct: 191 CSKFRFKSLDQGNAKKRLEEIAQLEGVGLEEGAIDALIKCSEGDLRKAITYLQS 244
>gi|213512735|ref|NP_001134241.1| replication factor C subunit 4 [Salmo salar]
gi|209731766|gb|ACI66752.1| Replication factor C subunit 4 [Salmo salar]
Length = 355
Score = 221 bits (564), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 128/327 (39%), Positives = 192/327 (58%), Gaps = 16/327 (4%)
Query: 39 KASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKL 98
K+ PWVEKYRP+ + +VA ++V + + LP+LL YGPPGTGKTSTILA AR+L
Sbjct: 30 KSVPWVEKYRPKCMEEVAFQEEVVAVLKKTIEGADLPNLLFYGPPGTGKTSTILAAAREL 89
Query: 99 YGAQ-YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKAS----VKLVLLDEADAM 153
YG + Y +LELNASD+RGI VVR++++ FA K+++LDEAD+M
Sbjct: 90 YGPELYRQRVLELNASDERGIQVVREKVKRFAQLTVAGHRTDGKPCPPFKIIILDEADSM 149
Query: 154 TKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVI 213
T AQ ALRR +EK ++ TRF LICN +++II L SRC++FRF PL ERL +
Sbjct: 150 TNAAQAALRRTMEKESRTTRFCLICNYISRIIEPLTSRCSKFRFKPLANQVQEERLLDIC 209
Query: 214 EAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHM--ASQQITEEAVYLCTGNPLPKDIE 271
+ E L ++ G+AALV++ GD+RKA+ LQS +ITE AV G PK I+
Sbjct: 210 DKENLKYSKEGIAALVKVSEGDLRKAITFLQSAARLNTDNEITESAVIEIAGVVPPKMID 269
Query: 272 QISYWLLNESFADSFKRISEMKMR----KGLALVDIVREVTMFVFKIKMPSDVRVRLMND 327
LL + +F+++ E+ +R +G A I+ ++ + + ++ + +
Sbjct: 270 N----LLKICYKGTFEKL-EIAVRNMVDEGYAATQIINQLHEAIIEEELNDKQKSAITEK 324
Query: 328 LADIEYRLSFGCNDKLQLGSIISTFTQ 354
+A ++ L G ++ LQ+ S+ S Q
Sbjct: 325 MAVVDKCLVDGADEYLQMLSLCSVIMQ 351
>gi|268325481|emb|CBH39069.1| replication factor C, small subunit [uncultured archaeon]
gi|268325789|emb|CBH39377.1| replication factor C, small subunit [uncultured archaeon]
Length = 322
Score = 221 bits (564), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 112/310 (36%), Positives = 183/310 (59%), Gaps = 4/310 (1%)
Query: 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 102
W EKYRP+ L +V+ I+ + + LPHL+ GP G GKT+ +A+AR+ Y
Sbjct: 7 WTEKYRPRKLEEVSGQEAIIRNLQSYVKKRNLPHLIFSGPAGVGKTAAAVAMAREFYDDT 66
Query: 103 YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALR 162
+ ELNASD+RGI+VVR I++FA T A+ K++ LDEADA+T AQ ALR
Sbjct: 67 WAENFTELNASDERGIEVVRNTIKNFARTMPIG---DAAFKIIFLDEADALTDAAQSALR 123
Query: 163 RVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTE 222
R +E+Y+ RF L CN +KII +QSRC+ +RF L + R K++ + EGL ++E
Sbjct: 124 RTMERYSGTCRFILSCNYSSKIIEPIQSRCSVYRFKSLSYDAIASRAKYIADTEGLTLSE 183
Query: 223 GGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESF 282
L A+ + GDMR+A+N LQS + S +I E +Y T P +IE + + F
Sbjct: 184 DALRAINYVSMGDMRRAINALQSASVLSNEIKPEMIYEITATARPDEIEALIETAMAGEF 243
Query: 283 ADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDK 342
D+ ++ + + KG++ +I+ ++ K+ + + +V LM+ + + +YR++ G N++
Sbjct: 244 LDALDKLGVL-IDKGISGDEILAQMHRLAIKMDISARQKVELMDRIGETDYRITEGANER 302
Query: 343 LQLGSIISTF 352
+QL ++I++
Sbjct: 303 IQLDALIASL 312
>gi|198426342|ref|XP_002130063.1| PREDICTED: similar to Replication factor C (activator 1) 2, 40kDa
[Ciona intestinalis]
Length = 336
Score = 221 bits (564), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 120/309 (38%), Positives = 181/309 (58%), Gaps = 3/309 (0%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP L+DV + V ++ +E +P++++ GPPG GKT++I+ +AR + GA
Sbjct: 18 PWVEKYRPTKLSDVVGNEATVSRLEVFANEGNVPNIIIAGPPGAGKTTSIMCLARTMLGA 77
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFAL 161
Y +LELNAS+DRGIDVVR +I+ FA Q K K+++LDEAD+MT AQ AL
Sbjct: 78 SYDVAVLELNASNDRGIDVVRNKIKMFA--QKKVTLPKGKHKIIILDEADSMTSGAQQAL 135
Query: 162 RRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVT 221
RR +E Y+K TRFAL CNQ +KII +QSRC R++ L + RL VI+ EG+
Sbjct: 136 RRTMEIYSKTTRFALACNQSDKIIEPIQSRCAVLRYSKLSDEQILSRLMEVIDKEGVRYD 195
Query: 222 EGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNES 281
+ GL AL+ GDMR+ALN LQSTH I + V+ P P ++ + +
Sbjct: 196 DSGLEALLFTAQGDMRQALNNLQSTHQGFSFINSDNVFKVCDEPHPLLLKTMLDHCVKAD 255
Query: 282 FADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCND 341
+++K I+ + G + DI+ + + +P V++ + +A+ R+ G N
Sbjct: 256 LDEAYKTINHL-WAMGYSPDDIITNIFRVLKTHDIPEYVKLEFIKLVAETHMRIVQGVNS 314
Query: 342 KLQLGSIIS 350
LQL ++++
Sbjct: 315 LLQLSALVA 323
>gi|294846008|gb|ADF43166.1| RFC4m [Chlamydomonas reinhardtii]
Length = 332
Score = 221 bits (564), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 128/336 (38%), Positives = 197/336 (58%), Gaps = 23/336 (6%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP+++++VA ++V+T+ R LPHLL YGPPGTGKTST LA+AR+LYG
Sbjct: 5 PWVEKYRPKNVSEVAYQEEVVNTLTRALETANLPHLLFYGPPGTGKTSTALAIARQLYGP 64
Query: 102 QY-HNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASV--------KLVLLDEADA 152
+ + +LELNASD+RGI VVR++++ FA+T V A V KL++LDEAD+
Sbjct: 65 ELMKSRVLELNASDERGIHVVREKVKAFAAT-----AVGAPVPGYPCPPYKLLILDEADS 119
Query: 153 MTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHV 212
MT+DAQ ALRR +E Y++ TRF ICN V++II L SRC +FRF PL+P + R++H+
Sbjct: 120 MTQDAQNALRRTMETYSRVTRFVFICNYVSRIIEPLASRCAKFRFKPLQPAIMAGRIEHI 179
Query: 213 IEAEGLDVTEGGLAALVRLCNGDMRKALNILQS-THMASQQITEEAVYLCTGNPLPKDIE 271
E E + + G L L + GD+R+A+N LQS + + + + +G P+ +
Sbjct: 180 CERESVTLGPGALDTLSAVSGGDLRRAINTLQSAARLGAGHVDRATLLDVSGQVAPEVVS 239
Query: 272 QISYWLLNESFADSFKRISEMK---MRKGLALVDIVREVTM-FVFKIKMPSDVRV-RLMN 326
++ A F + + + +G A ++ ++ + SD+R+ +
Sbjct: 240 SLAAACRATGAAGRFGALQKQVQNIIAEGYAAQQVLLQLQAELLSGADGGSDLRLCGALE 299
Query: 327 DLADIEYRLSFGCNDKLQLGSIISTFTQARSAIVAA 362
LA +Y L G ++ LQL ++ Q +A+ AA
Sbjct: 300 ALAGADYSLVVGADEALQL---LNVTGQVHAALAAA 332
>gi|387593541|gb|EIJ88565.1| hypothetical protein NEQG_01255 [Nematocida parisii ERTm3]
gi|387597195|gb|EIJ94815.1| hypothetical protein NEPG_00339 [Nematocida parisii ERTm1]
Length = 317
Score = 221 bits (563), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 118/315 (37%), Positives = 186/315 (59%), Gaps = 6/315 (1%)
Query: 40 ASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLY 99
+ EKYRP L ++ + I + L +PH L +GPPGTGKT+ A+ R++
Sbjct: 6 SQALTEKYRPTHLENLVGNVHITAGLQALVKSGDIPHFLFFGPPGTGKTTAAKAICREVL 65
Query: 100 GAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQF 159
N ++ELNASD+RGI V+R +++ FAST FG+ +K+V+LDEAD+MTKDAQ
Sbjct: 66 KTSDRN-VMELNASDERGISVIRDKVKVFAST----FGISNKMKMVILDEADSMTKDAQN 120
Query: 160 ALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLD 219
ALRR+IE Y+KN RF +ICN KIIPA++SRC FRF P++P + +K +I EG
Sbjct: 121 ALRRIIEIYSKNVRFIIICNYFTKIIPAIKSRCAPFRFGPVKPSEMFGFIKEIISKEGGT 180
Query: 220 VTEGGLAALVRLCNGDMRKALNILQSTHM-ASQQITEEAVYLCTGNPLPKDIEQISYWLL 278
G+ + + GD+RKA+N+ + A+++IT E V + ++I + + +
Sbjct: 181 GDTSGIERVCEISQGDIRKAINLTNGLLITANREITSEKVNEHYKDIKKEEIAETLHIMR 240
Query: 279 NESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFG 338
E+F K + ++ GL L +IV E+ + K + R + M L++IE+RL+ G
Sbjct: 241 TENFQRVKKEFEKHRVEYGLGLKEIVNEIAELLKKENNNNQSRCKEMQYLSEIEHRLARG 300
Query: 339 CNDKLQLGSIISTFT 353
++ +Q ++IS F+
Sbjct: 301 ASETVQENALISYFS 315
>gi|255088619|ref|XP_002506232.1| predicted protein [Micromonas sp. RCC299]
gi|226521503|gb|ACO67490.1| predicted protein [Micromonas sp. RCC299]
Length = 329
Score = 221 bits (563), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 128/326 (39%), Positives = 189/326 (57%), Gaps = 8/326 (2%)
Query: 40 ASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLY 99
+ PWVEKYRP+++ DVA ++V T+++ +PH+L YGPPGTGKT+ LA+ R+LY
Sbjct: 5 SQPWVEKYRPRNINDVAHQEEVVRTLEKALETANMPHMLFYGPPGTGKTTCALAICRQLY 64
Query: 100 GAQY-HNMILELNASDDRGIDVVRQQIQDFAST---QSFSFGVKASVKLVLLDEADAMTK 155
G + + +LELNASD+RGI VVR +I+ FAST Q K+++LDEAD+MT
Sbjct: 65 GPELIKSRVLELNASDERGISVVRNKIKGFASTAVGQGAPGYPSPPYKILILDEADSMTN 124
Query: 156 DAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEA 215
DAQ ALRR +E Y+K TRF ++CN +++II + SRC +FRF PL + +RLK + A
Sbjct: 125 DAQSALRRTMETYSKVTRFFILCNYISRIIEPIASRCAKFRFKPLGHEVMGDRLKFIATA 184
Query: 216 EGLDVTEGGLAALVRLCNGDMRKALNILQSTH--MASQQITEEAVYLCTGNPLPKDIEQI 273
EGL + EG A GDMRKA+ +LQS + IT + + G + Q+
Sbjct: 185 EGLTLGEGCYEACSTHSGGDMRKAITLLQSAARLFGTATITGKEITAVAGAVDEDQVAQV 244
Query: 274 SYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSD-VRVRLMNDLADIE 332
L + D RI E ++ G + I+ + V + SD V+ ++ +A+ +
Sbjct: 245 -VALCKTNQVDGANRIIESILKDGFPGLQIITQFAERVVDDEGVSDAVKGKICARIAEAD 303
Query: 333 YRLSFGCNDKLQLGSIISTFTQARSA 358
L G ++ LQL +I+ST A A
Sbjct: 304 KALVDGADESLQLMAIVSTACVAMKA 329
>gi|352683023|ref|YP_004893547.1| replication factor C small subunit [Thermoproteus tenax Kra 1]
gi|350275822|emb|CCC82469.1| replication factor C small subunit [Thermoproteus tenax Kra 1]
Length = 328
Score = 221 bits (563), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 113/303 (37%), Positives = 185/303 (61%), Gaps = 3/303 (0%)
Query: 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 102
W EKYRP+S A++ +I + +PHLL YGPPGTGKT+T L +AR+LYG +
Sbjct: 8 WFEKYRPKSFAEIVDLEEIKARLAEFIKAGNMPHLLFYGPPGTGKTTTALVLARELYGER 67
Query: 103 YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALR 162
+ LELNASD+RGI+V+R+++++FA T A KLV+LDEAD MT DAQ ALR
Sbjct: 68 WRENTLELNASDERGINVIRERVKEFARTAPAG---GAPFKLVVLDEADNMTSDAQQALR 124
Query: 163 RVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTE 222
R++E Y TRF L+ N V++II + SRC FRF P+ + +RL+++ E + +TE
Sbjct: 125 RIMEMYAATTRFVLLANYVSRIIDPILSRCAVFRFPPMPKPLMAQRLQYIASQERIKLTE 184
Query: 223 GGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESF 282
G+ A+ + GDMR+A+N+LQ ++ + +E+V P +I +I +
Sbjct: 185 DGIDAIYEISQGDMRRAINLLQMAAASAGVVDKESVAAVASAAKPSEILEIFNLAFSGDV 244
Query: 283 ADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDK 342
+ +R+ ++ +G+A +DI++ + + ++++ + + + LAD++ RL G +++
Sbjct: 245 EKARERLRDLMYMRGIAGIDILKALQRELPRLQIDEETKAAVAELLADVDLRLVEGSDEE 304
Query: 343 LQL 345
LQL
Sbjct: 305 LQL 307
>gi|85118512|ref|XP_965460.1| activator 1 41 kDa subunit [Neurospora crassa OR74A]
gi|28927269|gb|EAA36224.1| activator 1 41 kDa subunit [Neurospora crassa OR74A]
Length = 387
Score = 221 bits (563), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 108/215 (50%), Positives = 151/215 (70%), Gaps = 8/215 (3%)
Query: 39 KASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKL 98
+A PWVEKYRP++L+DV A + + R + LPH+L YGPPGTGKTSTILA+A++L
Sbjct: 30 RAQPWVEKYRPKTLSDVTAQDHTITVLQRTLQASNLPHMLFYGPPGTGKTSTILALAKEL 89
Query: 99 YGAQY-HNMILELNASDDRGIDVVRQQIQDFASTQ--SFSFGVKA-----SVKLVLLDEA 150
YG + + +LELNASD+RGI +VR++++DFA Q + S KA KL++LDEA
Sbjct: 90 YGPELIKSRVLELNASDERGISIVREKVKDFARMQLTNPSAAYKARYPCPPFKLIILDEA 149
Query: 151 DAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLK 210
D+MT+DAQ ALRR +E Y+K TRF LICN V +II L SRC++FRF L+ + +RL+
Sbjct: 150 DSMTQDAQSALRRTMETYSKITRFCLICNYVTRIIDPLASRCSKFRFKSLDQGNAKKRLE 209
Query: 211 HVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQS 245
+ + EG+ + EG + AL++ GD+RKA+ LQS
Sbjct: 210 EIAQLEGVGLEEGAVDALIKCSEGDLRKAITYLQS 244
>gi|159476624|ref|XP_001696411.1| DNA replication factor C complex subunit 4 [Chlamydomonas
reinhardtii]
gi|158282636|gb|EDP08388.1| DNA replication factor C complex subunit 4 [Chlamydomonas
reinhardtii]
gi|294845967|gb|ADF43126.1| RFC4p [Chlamydomonas reinhardtii]
Length = 332
Score = 221 bits (563), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 130/336 (38%), Positives = 196/336 (58%), Gaps = 23/336 (6%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP+++++VA ++V+T+ R LPHLL YGPPGTGKTST LA+AR+LYG
Sbjct: 5 PWVEKYRPKNVSEVAYQEEVVNTLTRALETANLPHLLFYGPPGTGKTSTALAIARQLYGP 64
Query: 102 QY-HNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASV--------KLVLLDEADA 152
+ + +LELNASD+RGI VVR++++ FA+T V A V KL++LDEAD+
Sbjct: 65 ELMKSRVLELNASDERGIHVVREKVKAFAAT-----AVGAPVPGYPCPPYKLLILDEADS 119
Query: 153 MTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHV 212
MT+DAQ ALRR +E Y++ TRF ICN V++II L SRC +FRF PL+P + R++H+
Sbjct: 120 MTQDAQNALRRTMETYSRVTRFVFICNYVSRIIEPLASRCAKFRFKPLQPAIMAGRIEHI 179
Query: 213 IEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYL-CTGNPLPKDIE 271
E E + + G L L + GD+R+A+N LQS + A L +G P+ +
Sbjct: 180 CERESVTLGPGALDTLSAVSGGDLRRAINTLQSAARLGGGHVDRATLLDVSGQVAPEVVS 239
Query: 272 QISYWLLNESFADSFKRISEMK---MRKGLALVDIVREVTM-FVFKIKMPSDVRV-RLMN 326
++ A F + + + +G A ++ ++ + SD+R+ +
Sbjct: 240 SLAAACRATGAAGRFGALQKQVQNIIAEGYAAQQVLLQLQAELLSGADGGSDLRLCGALE 299
Query: 327 DLADIEYRLSFGCNDKLQLGSIISTFTQARSAIVAA 362
LA +Y L G ++ LQL ++ Q +A+ AA
Sbjct: 300 ALAGADYSLVVGADEALQL---LNVTGQVHAALAAA 332
>gi|126459198|ref|YP_001055476.1| replication factor C small subunit [Pyrobaculum calidifontis JCM
11548]
gi|126248919|gb|ABO08010.1| replication factor C small subunit [Pyrobaculum calidifontis JCM
11548]
Length = 324
Score = 221 bits (563), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 121/318 (38%), Positives = 176/318 (55%), Gaps = 6/318 (1%)
Query: 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 102
W EKYRP+S +V ++ + LPHLL YGPPGTGKT+ L +AR+LYG
Sbjct: 6 WFEKYRPRSFEEVVDLEEVKARLREFVKAGNLPHLLFYGPPGTGKTTMALVLARELYGEY 65
Query: 103 YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALR 162
+ LELNASD+RGI V+R+++++FA T KA KLV+LDEAD MT DAQ ALR
Sbjct: 66 WRENTLELNASDERGIGVIRERVKEFARTAPVG---KAPFKLVILDEADNMTSDAQQALR 122
Query: 163 RVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTE 222
R++E Y +NTRF L+ N V+ II +QSR RF PL V RL+ + E EG+ V++
Sbjct: 123 RIMEIYAQNTRFILLANYVSNIIEPIQSRVVMIRFNPLPKEAVISRLRFIAENEGVKVSD 182
Query: 223 GGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESF 282
L A+ GDMRKA+N LQ S+++TEE V G P+ + ++ SF
Sbjct: 183 DALEAIYEFTQGDMRKAINALQVAASVSREVTEEEVAKALGMVSPRLLREVLQEATKGSF 242
Query: 283 ADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDK 342
+ +I + G+ ++I+R++ V ++ +P V+ L+ + Y + G
Sbjct: 243 NKALTQIYGFVVDGGVGELEIIRQLHREVLRLDVPEYVKPELVYIVGRAHYAILRGARG- 301
Query: 343 LQLGSIISTFTQARSAIV 360
L I + R +V
Sbjct: 302 --LAQIYGALAKIRKIVV 317
>gi|38567232|emb|CAE76524.1| probable replication factor protein [Neurospora crassa]
Length = 366
Score = 221 bits (562), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 108/215 (50%), Positives = 151/215 (70%), Gaps = 8/215 (3%)
Query: 39 KASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKL 98
+A PWVEKYRP++L+DV A + + R + LPH+L YGPPGTGKTSTILA+A++L
Sbjct: 30 RAQPWVEKYRPKTLSDVTAQDHTITVLQRTLQASNLPHMLFYGPPGTGKTSTILALAKEL 89
Query: 99 YGAQY-HNMILELNASDDRGIDVVRQQIQDFASTQ--SFSFGVKA-----SVKLVLLDEA 150
YG + + +LELNASD+RGI +VR++++DFA Q + S KA KL++LDEA
Sbjct: 90 YGPELIKSRVLELNASDERGISIVREKVKDFARMQLTNPSAAYKARYPCPPFKLIILDEA 149
Query: 151 DAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLK 210
D+MT+DAQ ALRR +E Y+K TRF LICN V +II L SRC++FRF L+ + +RL+
Sbjct: 150 DSMTQDAQSALRRTMETYSKITRFCLICNYVTRIIDPLASRCSKFRFKSLDQGNAKKRLE 209
Query: 211 HVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQS 245
+ + EG+ + EG + AL++ GD+RKA+ LQS
Sbjct: 210 EIAQLEGVGLEEGAVDALIKCSEGDLRKAITYLQS 244
>gi|255732489|ref|XP_002551168.1| activator 1 40 kDa subunit [Candida tropicalis MYA-3404]
gi|240131454|gb|EER31014.1| activator 1 40 kDa subunit [Candida tropicalis MYA-3404]
Length = 260
Score = 220 bits (561), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 114/255 (44%), Positives = 163/255 (63%), Gaps = 5/255 (1%)
Query: 106 MILELNASDDRGIDVVRQQIQDFAST-QSFSFGVKASVKLVLLDEADAMTKDAQFALRRV 164
M+LELNASDDRGIDVVR QI++FAST Q F+ KL++LDEADAMT AQ +LRR+
Sbjct: 1 MVLELNASDDRGIDVVRNQIKNFASTRQIFTSSNGNQFKLIILDEADAMTNVAQNSLRRI 60
Query: 165 IEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGG 224
IEKYTKN RF ++ N +K+ PAL SRCTRFRF P+E + ER+ +VI EG+ +T+
Sbjct: 61 IEKYTKNCRFCILANYSHKLNPALISRCTRFRFTPIEESSIKERMNYVIIKEGVKITDDA 120
Query: 225 LAALVRLCNGDMRKALNILQSTHMASQQ----ITEEAVYLCTGNPLPKDIEQISYWLLNE 280
L +L++L GDMR+ALN+LQ+ A + I + +Y C G P P D+E +L +
Sbjct: 121 LESLLKLSKGDMRRALNVLQACQAAKESQDEIINIDMIYECIGAPHPNDVETCLDSILKD 180
Query: 281 SFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCN 340
+ ++ +++ K KGLAL+D++ + ++ R ++ L+DIEY +S G N
Sbjct: 181 DWTTAYLTMNKYKNVKGLALIDLITGFVEILNNYQLNMKTRAEILKGLSDIEYGISRGGN 240
Query: 341 DKLQLGSIISTFTQA 355
DK+Q +II A
Sbjct: 241 DKIQTSAIIGVIKDA 255
>gi|342876153|gb|EGU77811.1| hypothetical protein FOXB_11675 [Fusarium oxysporum Fo5176]
Length = 382
Score = 220 bits (561), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 106/219 (48%), Positives = 151/219 (68%), Gaps = 8/219 (3%)
Query: 35 PPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAV 94
P + + PWVEKYRP++L+DV A VD + R + LPH+L YGPPGTGKTST+LA+
Sbjct: 27 PSNARTQPWVEKYRPKTLSDVTAQDHTVDVLQRTLQSSNLPHMLFYGPPGTGKTSTVLAL 86
Query: 95 ARKLYGAQY-HNMILELNASDDRGIDVVRQQIQDFASTQ--SFSFGVK-----ASVKLVL 146
A++LYG + +LELNASD+RGI +VR+++++FA Q + + G K K+++
Sbjct: 87 AKELYGPDMIKSRVLELNASDERGISIVREKVKNFARMQLTNPAPGYKDKYPCPPFKIII 146
Query: 147 LDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVT 206
LDEAD+MT+DAQ ALRR +E Y+K TRF LICN V +II L SRC++FRF L+ +
Sbjct: 147 LDEADSMTQDAQSALRRTMETYSKITRFCLICNYVTRIIDPLASRCSKFRFKSLDQSNAK 206
Query: 207 ERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQS 245
RL+ + E EG+ + +G + AL++ GD+RKA+ LQS
Sbjct: 207 RRLEEIAEKEGVALEDGAVDALIKCSEGDLRKAITFLQS 245
>gi|390594192|gb|EIN03605.1| P-loop containing nucleoside triphosphate hydrolase protein
[Punctularia strigosozonata HHB-11173 SS5]
Length = 364
Score = 220 bits (561), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 115/279 (41%), Positives = 175/279 (62%), Gaps = 16/279 (5%)
Query: 37 DIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVAR 96
+++ PWVEKYRP+++ DV+A V + + + LPH+L YGPPGTGKTSTILA+AR
Sbjct: 23 ELENQPWVEKYRPKTIEDVSAQEHTVAVLRKTLTSTNLPHMLFYGPPGTGKTSTILALAR 82
Query: 97 KLYGA-QYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKA--------SVKLVLL 147
+L+G + + +LELNASD+RGI +VR++I++FA + V + K+++L
Sbjct: 83 QLFGPDNFRSRVLELNASDERGISIVREKIKNFARQTPRAQAVSSDGKTYPCPPYKIIIL 142
Query: 148 DEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTE 207
DEAD+MT+DAQ ALRR++E Y + TRF L+CN V +II L SRC++FRF PL+P +
Sbjct: 143 DEADSMTQDAQAALRRIMENYARITRFCLVCNYVTRIIEPLASRCSKFRFKPLDPTSTSS 202
Query: 208 RLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLP 267
RL+HV +AE + VT L LV GD+R+++ LQS S T+ + + P
Sbjct: 203 RLQHVADAERVPVTPAVLDTLVSASQGDLRRSITYLQSASRLSAS-TDPPIPIT-----P 256
Query: 268 KDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVRE 306
DI++I+ ++ ++ +F R+ + R D +RE
Sbjct: 257 TDIQEIA-GVVPDAVVKNFARVLGVDNRARKKGFDNIRE 294
>gi|336464731|gb|EGO52971.1| activator 1 41 kDa subunit [Neurospora tetrasperma FGSC 2508]
Length = 387
Score = 220 bits (561), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 108/215 (50%), Positives = 151/215 (70%), Gaps = 8/215 (3%)
Query: 39 KASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKL 98
+A PWVEKYRP++L+DV A + + R + LPH+L YGPPGTGKTSTILA+A++L
Sbjct: 30 RAHPWVEKYRPKTLSDVTAQDHTITVLQRTLQASNLPHMLFYGPPGTGKTSTILALAKEL 89
Query: 99 YGAQY-HNMILELNASDDRGIDVVRQQIQDFASTQ--SFSFGVKA-----SVKLVLLDEA 150
YG + + +LELNASD+RGI +VR++++DFA Q + S KA KL++LDEA
Sbjct: 90 YGPELIKSRVLELNASDERGISIVREKVKDFARMQLTNPSAAYKARYPCPPFKLIILDEA 149
Query: 151 DAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLK 210
D+MT+DAQ ALRR +E Y+K TRF LICN V +II L SRC++FRF L+ + +RL+
Sbjct: 150 DSMTQDAQSALRRTMEMYSKITRFCLICNYVTRIIDPLASRCSKFRFKSLDQGNAKKRLE 209
Query: 211 HVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQS 245
+ + EG+ + EG + AL++ GD+RKA+ LQS
Sbjct: 210 EIAQLEGVGLEEGAVDALIKCSEGDLRKAITYLQS 244
>gi|296224812|ref|XP_002758207.1| PREDICTED: replication factor C subunit 4 [Callithrix jacchus]
Length = 363
Score = 220 bits (561), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 131/333 (39%), Positives = 198/333 (59%), Gaps = 8/333 (2%)
Query: 32 SGTPPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTI 91
SG K PWVEKYRP+ + +VA ++V + + LP+LL YGPPGTGKTSTI
Sbjct: 29 SGENKKAKPVPWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTI 88
Query: 92 LAVARKLYGAQYHNM-ILELNASDDRGIDVVRQQIQDFAS---TQSFSFGVKAS-VKLVL 146
LA AR+L+G + + +LELNASD+RGI VVR+++++FA + S S G K+V+
Sbjct: 89 LAAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPPFKIVI 148
Query: 147 LDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVT 206
LDEAD+MT AQ ALRR +EK +K TRF LICN V++II L SRC++FRF PL
Sbjct: 149 LDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQ 208
Query: 207 ERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTH--MASQQITEEAVYLCTGN 264
+RL + E E + +++ G+A LV++ GD+RKA+ LQS ++ITE+ + G
Sbjct: 209 QRLLDIAERENVKISDEGIAYLVKVSEGDLRKAITFLQSATRLTGGKEITEKVITDIAGV 268
Query: 265 PLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRL 324
+ I+ + + SF D + + + + +G A +V ++ V + +P + +
Sbjct: 269 IPAEKIDGVLAACQSGSF-DKLEAVVKDLIDEGHAATQLVSQLHDVVVENNLPDKQKSII 327
Query: 325 MNDLADIEYRLSFGCNDKLQLGSIISTFTQARS 357
LA+ + L+ G ++ LQL S+ +T Q S
Sbjct: 328 TEKLAEADKCLADGADEHLQLISLCATVMQQLS 360
>gi|348513512|ref|XP_003444286.1| PREDICTED: replication factor C subunit 4-like [Oreochromis
niloticus]
Length = 357
Score = 220 bits (561), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 140/353 (39%), Positives = 202/353 (57%), Gaps = 21/353 (5%)
Query: 18 QNLKPKDNGKNVIVSGTPPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHL 77
Q +P+ + K V+ KA PWVEKYRP+ + +VA ++V + + LP+L
Sbjct: 11 QAARPQKD-KAVVGPSAEKKAKAVPWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNL 69
Query: 78 LLYGPPGTGKTSTILAVARKLYGAQ-YHNMILELNASDDRGIDVVRQQIQDFASTQSFSF 136
L YGPPGTGKTSTILA AR+LYG + Y +LELNASD+RGI VVR ++++FA Q
Sbjct: 70 LFYGPPGTGKTSTILAAARELYGPELYRQRVLELNASDERGIQVVRDKVKNFA--QLTVA 127
Query: 137 GVKAS------VKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQS 190
G + K+++LDEAD+MT AQ ALRR +EK ++ TRF LICN +++II L S
Sbjct: 128 GTRPDGKSCPPFKIIILDEADSMTAPAQAALRRTMEKESRTTRFCLICNYISRIIEPLTS 187
Query: 191 RCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHM-- 248
RC++FRF PL ERL + E E L T+ +AALVR+ GD+RKA+ LQS
Sbjct: 188 RCSKFRFKPLANQIQEERLLEICEKENLKYTKESIAALVRVSEGDLRKAITFLQSAARLN 247
Query: 249 ASQQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMR----KGLALVDIV 304
++IT+ AV G K I+ LL F +F+++ E+ +R +G A I+
Sbjct: 248 VDKEITDCAVIEIAGVVPDKMIDN----LLQICFRGTFEKL-EVAVRNMVDEGYAATQIL 302
Query: 305 REVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDKLQLGSIISTFTQARS 357
++ V + + + + +A + LS G ++ LQL S+ S Q S
Sbjct: 303 TQLHECVIEQDLSDKQKSTITEKMAVVCKCLSDGADEYLQLLSLCSVIMQEAS 355
>gi|13542322|ref|NP_112010.1| replication factor C small subunit [Thermoplasma volcanium GSS1]
gi|73920753|sp|Q977Z9.2|RFCS_THEVO RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
Length = 318
Score = 220 bits (561), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 112/318 (35%), Positives = 188/318 (59%), Gaps = 6/318 (1%)
Query: 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 102
W EKYRP+SL+++ + + + + LPHLL G GTGKTST +A+A +L+G
Sbjct: 5 WTEKYRPKSLSEIYGEDENIQKLKSFVEKKELPHLLFAGSVGTGKTSTAIALAIELFGES 64
Query: 103 YHNMILELNASDDRGIDVVRQQIQDFASTQ-SFSFGVKASVKLVLLDEADAMTKDAQFAL 161
+ +E+NAS++ GIDV+R +I+D A + S G K ++ LDEAD +T +AQ AL
Sbjct: 65 WKENFIEMNASNENGIDVIRNKIKDIARIRPSNPLGFK----ILFLDEADQLTAEAQAAL 120
Query: 162 RRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVT 221
RR +E Y++ TRF CN +KIIP +QSR RF P++ + ++L + + EG +
Sbjct: 121 RRTMEMYSETTRFVFACNYSSKIIPPIQSRTVVMRFRPVQDEFIKKKLNEIAKNEGFTID 180
Query: 222 EGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNES 281
+ + A+V + GDMRKA+N+LQ+ + S +I+ + +Y G P+ + ++ +N
Sbjct: 181 DESMEAMVEVSGGDMRKAINVLQAVY-TSGEISPKKIYEIIGYASPESVNKLISRAINGL 239
Query: 282 FADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCND 341
F ++ + + +M + GL+ +DIV+ V V +P ++ ++ LAD E+R+ G ND
Sbjct: 240 FDEARQIVDKMMIEDGLSGIDIVKSVHSIVRASVVPPKQKIEIIKALADAEFRIVEGSND 299
Query: 342 KLQLGSIISTFTQARSAI 359
++QL ++I+ S I
Sbjct: 300 RIQLDALIARIADIGSKI 317
>gi|374325546|ref|YP_005083743.1| replication factor C small subunit [Pyrobaculum sp. 1860]
gi|356640812|gb|AET31491.1| replication factor C small subunit [Pyrobaculum sp. 1860]
Length = 319
Score = 220 bits (561), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 113/303 (37%), Positives = 177/303 (58%), Gaps = 3/303 (0%)
Query: 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 102
W EKYRP+S +V ++ + +PHLL YGPPGTGKT+ L +AR+LYG
Sbjct: 6 WFEKYRPRSFDEVVDLEEVKARLRGFVKSGDMPHLLFYGPPGTGKTTMALVLARELYGEY 65
Query: 103 YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALR 162
+ LELNASD+RGI+V+R+++++FA T KA KLV+LDEAD MT DAQ ALR
Sbjct: 66 WRENTLELNASDERGINVIRERVKEFARTAPVG---KAPFKLVILDEADNMTSDAQQALR 122
Query: 163 RVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTE 222
R++E Y +NTRF L+ N ++ II +QSR FRF+PL V RL+++ E EG+ +++
Sbjct: 123 RIMEIYAQNTRFILLANYISGIIEPIQSRTVMFRFSPLPKEAVFTRLRYIAENEGVKISD 182
Query: 223 GGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESF 282
L + GDMR+A+N LQ +++TEE V G P+ + + + + SF
Sbjct: 183 DALETIYEFTQGDMRRAINALQIAASVDKEVTEEVVARALGMVSPRLLREALHEAVKGSF 242
Query: 283 ADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDK 342
+ +I + G+ ++I++++ V ++ +P V+ L +A+ Y + G +
Sbjct: 243 GKAATQIYGFVVDGGVGELEIIKQIHREVLRLDVPEYVKPELAYIIAEAHYAILRGAHGL 302
Query: 343 LQL 345
Q+
Sbjct: 303 TQI 305
>gi|367013632|ref|XP_003681316.1| hypothetical protein TDEL_0D05210 [Torulaspora delbrueckii]
gi|359748976|emb|CCE92105.1| hypothetical protein TDEL_0D05210 [Torulaspora delbrueckii]
Length = 322
Score = 220 bits (561), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 120/318 (37%), Positives = 186/318 (58%), Gaps = 10/318 (3%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP+ L D+ + + V+ ++++ + +PH+++ G PG GKT+++ +A +L G
Sbjct: 12 PWVEKYRPEKLKDIVGNEETVERLEQIAKDGNMPHMIISGLPGIGKTTSVHCLAHELLGK 71
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFAL 161
Y +LELNASDDRGIDVVR QI+ FA + K K+++LDEAD+MT AQ AL
Sbjct: 72 SYSQAVLELNASDDRGIDVVRNQIKHFAQKKCHLPPGKH--KIIILDEADSMTAGAQQAL 129
Query: 162 RRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVT 221
RR +E Y+ TRFA CNQ NKII LQSRC R++ L V +RL +I+AE + T
Sbjct: 130 RRTMELYSNTTRFAFACNQSNKIIEPLQSRCAILRYSKLSDEQVLKRLMEIIKAENVSFT 189
Query: 222 EGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNES 281
GL A++ GDMR+A+N LQST ++ + V+ +P P ++++ LL ++
Sbjct: 190 NDGLEAIIFTAEGDMRQAINNLQSTVAGHGLVSGDNVFKIVDSPHPLIVKKM---LLADT 246
Query: 282 FADSFKRISEMKMRKGLALVDIVR---EVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFG 338
+S + KG + VDIV VT ++++K R+ ++ ++ R+ G
Sbjct: 247 LEESISHLKNDLWDKGYSAVDIVTTSFRVTKSLYQVKEAQ--RLEMIKEIGITHMRILEG 304
Query: 339 CNDKLQLGSIISTFTQAR 356
LQL S+++ + R
Sbjct: 305 VGTYLQLASLLARIHRLR 322
>gi|336272567|ref|XP_003351040.1| hypothetical protein SMAC_04344 [Sordaria macrospora k-hell]
gi|380090807|emb|CCC04977.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 387
Score = 220 bits (560), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 107/215 (49%), Positives = 150/215 (69%), Gaps = 8/215 (3%)
Query: 39 KASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKL 98
+A PWVEKYRP++L+DV A + + R LPH+L YGPPGTGKTSTILA+A++L
Sbjct: 30 RAQPWVEKYRPKTLSDVTAQDHTITVLQRTLQATNLPHMLFYGPPGTGKTSTILALAKEL 89
Query: 99 YGAQY-HNMILELNASDDRGIDVVRQQIQDFASTQ--SFSFGVKA-----SVKLVLLDEA 150
YG + + +LELNASD+RGI +VR++++DFA Q + S KA K+++LDEA
Sbjct: 90 YGPELIKSRVLELNASDERGISIVREKVKDFARMQLTNPSAAYKARYPCPPFKIIILDEA 149
Query: 151 DAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLK 210
D+MT+DAQ ALRR +E Y+K TRF LICN V +II L SRC++FRF L+ + +RL+
Sbjct: 150 DSMTQDAQSALRRTMETYSKITRFCLICNYVTRIIDPLASRCSKFRFKSLDQGNAKKRLE 209
Query: 211 HVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQS 245
+ + EG+ + EG + AL++ GD+RKA+ LQS
Sbjct: 210 EIAQLEGVGLEEGAVDALIKCSEGDLRKAITYLQS 244
>gi|14325757|dbj|BAB60660.1| replication factor C subunit [Thermoplasma volcanium GSS1]
Length = 330
Score = 220 bits (560), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 112/318 (35%), Positives = 188/318 (59%), Gaps = 6/318 (1%)
Query: 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 102
W EKYRP+SL+++ + + + + LPHLL G GTGKTST +A+A +L+G
Sbjct: 17 WTEKYRPKSLSEIYGEDENIQKLKSFVEKKELPHLLFAGSVGTGKTSTAIALAIELFGES 76
Query: 103 YHNMILELNASDDRGIDVVRQQIQDFASTQ-SFSFGVKASVKLVLLDEADAMTKDAQFAL 161
+ +E+NAS++ GIDV+R +I+D A + S G K ++ LDEAD +T +AQ AL
Sbjct: 77 WKENFIEMNASNENGIDVIRNKIKDIARIRPSNPLGFK----ILFLDEADQLTAEAQAAL 132
Query: 162 RRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVT 221
RR +E Y++ TRF CN +KIIP +QSR RF P++ + ++L + + EG +
Sbjct: 133 RRTMEMYSETTRFVFACNYSSKIIPPIQSRTVVMRFRPVQDEFIKKKLNEIAKNEGFTID 192
Query: 222 EGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNES 281
+ + A+V + GDMRKA+N+LQ+ + S +I+ + +Y G P+ + ++ +N
Sbjct: 193 DESMEAMVEVSGGDMRKAINVLQAVY-TSGEISPKKIYEIIGYASPESVNKLISRAINGL 251
Query: 282 FADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCND 341
F ++ + + +M + GL+ +DIV+ V V +P ++ ++ LAD E+R+ G ND
Sbjct: 252 FDEARQIVDKMMIEDGLSGIDIVKSVHSIVRASVVPPKQKIEIIKALADAEFRIVEGSND 311
Query: 342 KLQLGSIISTFTQARSAI 359
++QL ++I+ S I
Sbjct: 312 RIQLDALIARIADIGSKI 329
>gi|323303129|gb|EGA56931.1| Rfc4p [Saccharomyces cerevisiae FostersB]
Length = 323
Score = 220 bits (560), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 122/312 (39%), Positives = 186/312 (59%), Gaps = 10/312 (3%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRPQ L+D+ +++ +D + ++ + +PH+++ G PG GKT+++ +A +L G
Sbjct: 10 PWVEKYRPQVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLGR 69
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFAL 161
Y + +LELNASDDRGIDVVR QI+ FA + K K+V+LDEAD+MT AQ AL
Sbjct: 70 SYADGVLELNASDDRGIDVVRNQIKHFAQKKLHLPPGKH--KIVILDEADSMTAGAQQAL 127
Query: 162 RRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVT 221
RR +E Y+ +TRFA CNQ NKII LQSRC R++ L V +RL +I+ E + T
Sbjct: 128 RRTMELYSNSTRFAFACNQSNKIIEPLQSRCAILRYSKLSDEDVLKRLLQIIKLEDVKYT 187
Query: 222 EGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNES 281
GL A++ GDMR+A+N LQST + + V+ +P P ++++ LL +
Sbjct: 188 NDGLEAIIFTAEGDMRQAINNLQSTVAGHGLVNADNVFKIVDSPHPLIVKKM---LLASN 244
Query: 282 FADSFKRISEMKMRKGLALVDIVR---EVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFG 338
DS + + +KG + +DIV VT + ++K VR+ +M ++ R+ G
Sbjct: 245 LEDSIQILRTDLWKKGYSSIDIVTTSFRVTKNLAQVK--ESVRLEMMKEIGLTHMRILEG 302
Query: 339 CNDKLQLGSIIS 350
LQL S+++
Sbjct: 303 VGTYLQLASMLA 314
>gi|171185161|ref|YP_001794080.1| replication factor C small subunit [Pyrobaculum neutrophilum
V24Sta]
gi|170934373|gb|ACB39634.1| Replication factor C [Pyrobaculum neutrophilum V24Sta]
Length = 319
Score = 219 bits (559), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 117/303 (38%), Positives = 175/303 (57%), Gaps = 4/303 (1%)
Query: 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 102
W EKYRP+S +V ++ + +PHLL YGPPGTGKT+ L +AR+LYG
Sbjct: 6 WFEKYRPRSFDEVVDLEEVKSRLREFVRSGNMPHLLFYGPPGTGKTTMALVLARELYGEY 65
Query: 103 YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALR 162
+ LELNASD+RGI+V+R+++++FA T +KA KLV+LDEAD MT DAQ ALR
Sbjct: 66 WRENTLELNASDERGINVIRERVKEFARTAP----IKAPFKLVILDEADNMTSDAQQALR 121
Query: 163 RVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTE 222
R++E Y +NTRF L+ N V+ II +QSR RF PL V RL+++ E EG+ ++
Sbjct: 122 RIMEIYAQNTRFILLANYVSGIIEPIQSRVVMVRFNPLPKDAVIARLRYIAENEGIKASD 181
Query: 223 GGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESF 282
L + GDMRKA+N LQ S++ITEE V G PK + + + + SF
Sbjct: 182 DALETIFEFTQGDMRKAINALQIAAATSREITEETVAKALGLVSPKLLRETLHEAVRGSF 241
Query: 283 ADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDK 342
+ + +I + G+ ++I++++ V ++ +P V+ L +A+ Y G
Sbjct: 242 SKAMTQIYGFVVDGGVGELEILKQIHREVLRLDVPEYVKPDLAYIVAEAHYATLRGARGL 301
Query: 343 LQL 345
Q+
Sbjct: 302 AQI 304
>gi|408398889|gb|EKJ78015.1| hypothetical protein FPSE_01803 [Fusarium pseudograminearum CS3096]
Length = 382
Score = 219 bits (559), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 106/219 (48%), Positives = 151/219 (68%), Gaps = 8/219 (3%)
Query: 35 PPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAV 94
P + + PWVEKYRP++L+DV A VD + R + LPH+L YGPPGTGKTST+LA+
Sbjct: 27 PTNTRNQPWVEKYRPKTLSDVTAQDHTVDVLQRTLQSSNLPHMLFYGPPGTGKTSTVLAL 86
Query: 95 ARKLYGAQY-HNMILELNASDDRGIDVVRQQIQDFASTQ--SFSFGVK-----ASVKLVL 146
A++LYG + +LELNASD+RGI +VR+++++FA Q + G K K+++
Sbjct: 87 AKELYGPDMIKSRVLELNASDERGISIVREKVKNFARMQLTNPPPGYKDKYPCPPFKIII 146
Query: 147 LDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVT 206
LDEAD+MT+DAQ ALRR +E Y+K TRF LICN V +II L SRC++FRF L+ +
Sbjct: 147 LDEADSMTQDAQSALRRTMETYSKITRFCLICNYVTRIIDPLASRCSKFRFKSLDQSNAK 206
Query: 207 ERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQS 245
+RL+ + E EG+ + +G + AL++ GD+RKA+ LQS
Sbjct: 207 KRLEEIAEKEGVPLEDGAVDALIKCSEGDLRKAITFLQS 245
>gi|367020560|ref|XP_003659565.1| hypothetical protein MYCTH_2296782 [Myceliophthora thermophila ATCC
42464]
gi|347006832|gb|AEO54320.1| hypothetical protein MYCTH_2296782 [Myceliophthora thermophila ATCC
42464]
Length = 384
Score = 219 bits (559), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 107/220 (48%), Positives = 154/220 (70%), Gaps = 8/220 (3%)
Query: 34 TPPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILA 93
T + +A PWVEKYRP+ L+DV A + ++R + LPH+L YGPPGTGKTSTILA
Sbjct: 27 TNENARAQPWVEKYRPKKLSDVTAQDHTITVLERTLQASNLPHMLFYGPPGTGKTSTILA 86
Query: 94 VARKLYGAQ-YHNMILELNASDDRGIDVVRQQIQDFASTQ--SFSFGVKA-----SVKLV 145
+A++LYG + + +LELNASD+RGI +VR++++DFA TQ + G K+ K++
Sbjct: 87 LAKELYGPELMKSRVLELNASDERGISIVREKVKDFARTQLTNPPPGYKSRYPCPPFKII 146
Query: 146 LLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHV 205
+LDEAD+MT+DAQ ALRR +E Y+K TRF LICN V +II L SRC++FRF L+ +
Sbjct: 147 ILDEADSMTQDAQSALRRTMETYSKITRFCLICNYVTRIIDPLASRCSKFRFKSLDQGNA 206
Query: 206 TERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQS 245
RL+ + + EG+ + +G + AL++ +GD+RKA+ LQS
Sbjct: 207 RRRLEDIAKLEGVPIDDGAVDALIKCSDGDLRKAITFLQS 246
>gi|302830262|ref|XP_002946697.1| DNA replication factor C complex subunit 4 [Volvox carteri f.
nagariensis]
gi|300267741|gb|EFJ51923.1| DNA replication factor C complex subunit 4 [Volvox carteri f.
nagariensis]
Length = 328
Score = 219 bits (559), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 107/237 (45%), Positives = 154/237 (64%), Gaps = 4/237 (1%)
Query: 38 IKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARK 97
+ PWVEKYRP+++ +VA ++V+T+ R LPHLL YGPPGTGKTST LA+AR+
Sbjct: 1 MSTQPWVEKYRPKNVNEVAYQEEVVNTLTRALETANLPHLLFYGPPGTGKTSTALAIARQ 60
Query: 98 LYGAQ-YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVK---ASVKLVLLDEADAM 153
LYG + + ++ELNASD+RGI VVR++++ FA+ + KL++LDEAD+M
Sbjct: 61 LYGPELMKSRVMELNASDERGIHVVREKVKSFAAAAVGAPVPGYPCPPYKLLILDEADSM 120
Query: 154 TKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVI 213
T+DAQ ALRR +E Y++ TRF ICN V++II L SRC +FRF PL+P + R++H+
Sbjct: 121 TQDAQSALRRTMETYSRVTRFVFICNYVSRIIEPLASRCAKFRFKPLQPTVMAGRIEHIC 180
Query: 214 EAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDI 270
E EG+ + G L AL + GD+R+A+ LQS ++A L +P D+
Sbjct: 181 EREGVTLAPGALEALSSVSGGDLRRAITTLQSAARLGGGTVDKATLLDVSGRVPADV 237
>gi|367015134|ref|XP_003682066.1| hypothetical protein TDEL_0F00440 [Torulaspora delbrueckii]
gi|359749728|emb|CCE92855.1| hypothetical protein TDEL_0F00440 [Torulaspora delbrueckii]
Length = 354
Score = 219 bits (559), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 120/335 (35%), Positives = 196/335 (58%), Gaps = 37/335 (11%)
Query: 40 ASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLY 99
+ PWVEKYRP+ L +VAA V+ + + + LPH+L YGPPGTGKTSTILA+ ++L+
Sbjct: 22 SKPWVEKYRPKKLDEVAAQDHAVNVLKKTLGSSNLPHMLFYGPPGTGKTSTILALTKELF 81
Query: 100 GAQY-HNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVK-------ASVKLVLLDEAD 151
G + +LELNASD+RGI +VR+++++FA K K+++LDEAD
Sbjct: 82 GPELTKTRVLELNASDERGISIVREKVKNFARLTVSKPSAKDRENHPCPPYKIIILDEAD 141
Query: 152 AMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKH 211
+MT DAQ ALRR +E Y+ TRF LICN V +II L SRC++FRF L+ + +RLK+
Sbjct: 142 SMTADAQSALRRTMETYSSVTRFCLICNYVTRIIDPLASRCSKFRFKSLDAANALDRLKY 201
Query: 212 VIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHM-----ASQQITEEAVYLCTGNPL 266
+ + E +D EG L ++++ +GDMR+A+ +LQS H S++IT
Sbjct: 202 IAKEESVDYEEGVLDDILKISSGDMRRAITLLQSAHKRKGLEGSKKIT------------ 249
Query: 267 PKDIEQISYWLLNESFADSFKRISEMK-----------MRKGLALVDIVREV-TMFVFKI 314
P++IE+IS + N + + +I+E M+ G ++ + ++ ++
Sbjct: 250 PQEIEEISGLVPNSTIHELAAKIAESNIDEIAEYVNTFMKSGWSVAAVTEQLHNYYLVSD 309
Query: 315 KMPSDVRVRLMNDLADIEYRLSFGCNDKLQLGSII 349
+D + ++ L + + +L+ G N+ +QL +++
Sbjct: 310 DYGTDFKNKVSWILFNTDSKLTNGTNEHIQLLNLV 344
>gi|395839806|ref|XP_003792767.1| PREDICTED: replication factor C subunit 4 [Otolemur garnettii]
Length = 365
Score = 219 bits (559), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 132/331 (39%), Positives = 201/331 (60%), Gaps = 9/331 (2%)
Query: 32 SGTPPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTI 91
SG K PWVEKYRP+S+ +VA ++V + + LP+LL YGPPGTGKTSTI
Sbjct: 30 SGENKKAKPVPWVEKYRPKSVDEVAFQDEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTI 89
Query: 92 LAVARKLYGAQYHNM-ILELNASDDRGIDVVRQQIQDFAS---TQSFSFG-VKASVKLVL 146
LA AR+L+G + + +LELNASD+RGI V+R+++++FA + S S G + K+V+
Sbjct: 90 LAAARELFGPELFRLRVLELNASDERGIQVIREKVKNFAQLTVSGSRSDGKLCPPFKIVI 149
Query: 147 LDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVT 206
LDEAD+MT AQ ALRR +EK +K TRF LICN V++II L SRC++FRF PL
Sbjct: 150 LDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQ 209
Query: 207 ERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTH--MASQQITEEAVYLCTGN 264
+RL ++ E E + ++ G+A LV++ GD+RKA+ LQS ++ITEE + G
Sbjct: 210 QRLLNITEKENVKISSEGIAYLVKVSEGDLRKAITFLQSATRLTGGKEITEEVITDIAGV 269
Query: 265 PLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRL 324
+ I+ + + SF D + + + + +G A +V ++ V + SD + +
Sbjct: 270 IPSETIDGVFAACQSGSF-DKLETVVKDLIIEGHAATQLVNQLHDVVVENDTLSDKQKSI 328
Query: 325 MND-LADIEYRLSFGCNDKLQLGSIISTFTQ 354
+ + LA+ + L+ G ++ LQL S+ +T Q
Sbjct: 329 ITEKLAEADKCLADGADEHLQLISLCATVMQ 359
>gi|302851817|ref|XP_002957431.1| DNA replication factor C complex subunit 2 [Volvox carteri f.
nagariensis]
gi|300257235|gb|EFJ41486.1| DNA replication factor C complex subunit 2 [Volvox carteri f.
nagariensis]
Length = 335
Score = 219 bits (559), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 124/323 (38%), Positives = 189/323 (58%), Gaps = 13/323 (4%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PW+EKYRPQ + ++ + + V + + E +P+++L GPPGTGKT++IL +A +L G
Sbjct: 20 PWLEKYRPQYIHEIVGNMEAVARLQVIAEEGNMPNVILAGPPGTGKTTSILCLAHQLLGP 79
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQ-SFSFGVKASVKLVLLDEADAMTKDAQFA 160
Y +LELNASDDRGIDVVR +I+ FA + + G K+V+LDEAD+MT AQ A
Sbjct: 80 TYKEAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRH---KIVILDEADSMTAGAQQA 136
Query: 161 LRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDV 220
LRR +E Y+ TRFAL CNQ +KII +QSRC R++ + V + RL+ V E EG+
Sbjct: 137 LRRTMEIYSNTTRFALACNQSSKIIEPIQSRCAIVRYSRISDVDILSRLRLVCEKEGVTY 196
Query: 221 TEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPK----DIEQISYW 276
+ G+ AL+ +GDMR+ALN LQ+TH I++E V+ P PK IE S
Sbjct: 197 NDEGMEALIFTADGDMRQALNNLQATHSGFGFISQENVFKVCDQPHPKLVMSIIENCSKA 256
Query: 277 LLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLS 336
L+ ++A K + ++ G + DI+ V V +P +++ + ++ R++
Sbjct: 257 DLDAAYA-GLKGLVDL----GYSSHDIITTVFRVVRNADIPEFLKLEYLREVGFCHMRIA 311
Query: 337 FGCNDKLQLGSIISTFTQARSAI 359
G N +LQL +++ A+
Sbjct: 312 EGVNSRLQLSGMLAKLCSKTLAV 334
>gi|410984622|ref|XP_003998626.1| PREDICTED: replication factor C subunit 2 isoform 1 [Felis catus]
Length = 352
Score = 219 bits (559), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 119/321 (37%), Positives = 186/321 (57%), Gaps = 3/321 (0%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP L+++ + D V ++ E +P++++ GPPGTGKT++IL +AR L G
Sbjct: 35 PWVEKYRPVKLSEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGP 94
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFAL 161
+ + +LELNAS+DRGIDVVR +I+ FA Q + K K+++LDEAD+MT AQ AL
Sbjct: 95 AFKDAVLELNASNDRGIDVVRNKIKMFAQ-QKVTL-PKGRHKIMILDEADSMTDGAQQAL 152
Query: 162 RRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVT 221
RR +E Y+K TRFAL CN +KII +QSRC R+ L V RL V+E E + T
Sbjct: 153 RRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLSDAQVLARLMTVLEQEKVQYT 212
Query: 222 EGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNES 281
+ GL A++ GDMR+ALN LQST I E V+ P P ++++ +N +
Sbjct: 213 DDGLEAIIFTAQGDMRQALNNLQSTFSGFGFINSENVFKVCDEPHPLLVKEMIQHCVNAN 272
Query: 282 FADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCND 341
+++K ++ + G + DI+ + +M +++ + ++ +++ G N
Sbjct: 273 IDEAYKILAHL-WHLGYSPEDIIGNIFRVCKTFQMAEYLKLEFIKEIGYTHMKIAEGVNS 331
Query: 342 KLQLGSIISTFTQARSAIVAA 362
LQ+ +++ Q A VA+
Sbjct: 332 LLQMAGLLARLCQKTVAPVAS 352
>gi|424513766|emb|CCO66388.1| replication factor C subunit 2 [Bathycoccus prasinos]
Length = 373
Score = 219 bits (559), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 122/314 (38%), Positives = 181/314 (57%), Gaps = 10/314 (3%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PW+EK+RP L D+ H + ++ + + +P+LLL GPPG GKT+++ +AR L G
Sbjct: 25 PWIEKWRPTKLDDIVGHEETLNQMRGMIETGSMPNLLLSGPPGCGKTTSVHVLARTLLGD 84
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQ-SFSFGVKASVKLVLLDEADAMTKDAQFA 160
+Y + +LELNASD+RGIDVVR +I+ FA + + G K+++LDEADAMTK AQ A
Sbjct: 85 RYKDAVLELNASDERGIDVVRNKIKMFAQKKVTLPAG---RCKIIILDEADAMTKGAQQA 141
Query: 161 LRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDV 220
+RR +E Y+ TRFAL CN +KII +QSRC RF+ L V ERL +V E E +
Sbjct: 142 MRRTMEIYSATTRFALACNLSDKIIEPIQSRCAIVRFSRLSDKQVLERLVYVCEQEKVPH 201
Query: 221 TEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNE 280
GL A+V GDMR ALN LQ+ H Q + +E V+ P P+ I I LN
Sbjct: 202 DARGLEAIVFCAEGDMRNALNSLQACHSGFQMVNQENVFRVCDTPHPEVIGAILQHCLNG 261
Query: 281 SFADSFKRISEMKMRK-GLALVDIVREVTMFVFKI---KMPSDVRVRLMNDLADIEYRLS 336
D+ R+ +K+RK G + D+++ + + +M V++ + + R+S
Sbjct: 262 ELDDACDRL--LKLRKSGYSPQDLIKTIFQVCKRFDDKEMSEYVKLEFLKIIGFFHVRIS 319
Query: 337 FGCNDKLQLGSIIS 350
GC +QL +++
Sbjct: 320 EGCASDVQLCGMVA 333
>gi|73669094|ref|YP_305109.1| replication factor C small subunit [Methanosarcina barkeri str.
Fusaro]
gi|110287811|sp|Q46C63.1|RFCS_METBF RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|72396256|gb|AAZ70529.1| replication factor C small subunit [Methanosarcina barkeri str.
Fusaro]
Length = 334
Score = 219 bits (558), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 118/326 (36%), Positives = 189/326 (57%), Gaps = 14/326 (4%)
Query: 38 IKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARK 97
IK W+EKYRP L VA + ++ + + LPHLL GPPG GKT++ +++AR+
Sbjct: 6 IKEEIWIEKYRPVRLDQVAGQEETIERLKSYVATKNLPHLLFSGPPGVGKTASAVSIARE 65
Query: 98 LYGAQ-YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKD 156
++G + ELNASD+RGIDVVR +I++FA T A K++ LDEADA+T D
Sbjct: 66 IFGEDLWRENFTELNASDERGIDVVRTKIKNFAKTAPMG---GAEFKIIFLDEADALTSD 122
Query: 157 AQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAE 216
AQ ALRR +E+++ N RF L CN ++II +QSRC FRF L + +RL+++ + +
Sbjct: 123 AQSALRRTMERFSNNCRFILSCNYSSRIIEPIQSRCAVFRFRRLSDEAIRKRLEYIAKDQ 182
Query: 217 GLDVTEGGLAALVRLCNGDMRKALNILQSTHMA--SQQITEEAVYLCTGNPLPKDIEQIS 274
L +TE G ALV + GDMRKA+N LQ+ ++ I+ +Y T P+DI +
Sbjct: 183 VLSITEDGYEALVYVSQGDMRKAVNSLQAAAFVEPNKSISRGTIYRTTATANPEDIRNLI 242
Query: 275 YWLLNESFADSFKRISEMKMRKGLALVDIVREV--------TMFVFKIKMPSDVRVRLMN 326
L +F + K ++ + +GL+ DIV ++ + + + V L++
Sbjct: 243 ETALRGNFRVARKELNRLLYEEGLSGEDIVGQIYRAISEMDNRMILDLGLSEKRIVELVD 302
Query: 327 DLADIEYRLSFGCNDKLQLGSIISTF 352
+ +I++RL+ G +K+QL ++++ F
Sbjct: 303 IIGEIDFRLTEGATEKIQLEALLAHF 328
>gi|52317098|ref|NP_999902.2| replication factor C subunit 4 [Danio rerio]
gi|49619077|gb|AAT68123.1| replication factor C subunit RFC4 [Danio rerio]
Length = 358
Score = 219 bits (558), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 126/325 (38%), Positives = 192/325 (59%), Gaps = 12/325 (3%)
Query: 39 KASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKL 98
+A PWVEKYRP+ + +VA ++V + + LP+LL YGPPGTGKTSTILA AR+L
Sbjct: 31 RAVPWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAAREL 90
Query: 99 YGAQ-YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKAS------VKLVLLDEAD 151
YG Y +LELNASD+RGI VVR++++ FA Q G + K+++LDEAD
Sbjct: 91 YGPDLYRQRVLELNASDERGIQVVREKVKRFA--QLTVAGTRPDGKTCPPFKIIILDEAD 148
Query: 152 AMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKH 211
+MT AQ ALRR +EK ++ TRF LICN V++II L SRC++FRF PL ER+
Sbjct: 149 SMTSAAQAALRRTMEKESRTTRFCLICNYVSRIIEPLTSRCSKFRFKPLANDVQQERILE 208
Query: 212 VIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHM--ASQQITEEAVYLCTGNPLPKD 269
+ E L T G+ ALVR+ GD+RKA+ LQS + ++ITE+ + G PK
Sbjct: 209 ICRKENLKYTTEGVDALVRVSEGDLRKAITFLQSGARLNSEREITEQTIIEIAGVVPPKV 268
Query: 270 IEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLA 329
I+ + + +F + +M + +G A +++ ++ + + ++ + + +A
Sbjct: 269 IQSLLHICYKGTFEKLEVAVKDM-IDQGYAATNLLNQLHDVIIEEQLSDKQKSVITEKMA 327
Query: 330 DIEYRLSFGCNDKLQLGSIISTFTQ 354
+++ L+ G ++ LQL S+ S Q
Sbjct: 328 EVDKCLADGADEYLQLLSLCSVIMQ 352
>gi|297837097|ref|XP_002886430.1| hypothetical protein ARALYDRAFT_475032 [Arabidopsis lyrata subsp.
lyrata]
gi|297332271|gb|EFH62689.1| hypothetical protein ARALYDRAFT_475032 [Arabidopsis lyrata subsp.
lyrata]
Length = 334
Score = 219 bits (558), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 122/317 (38%), Positives = 181/317 (57%), Gaps = 5/317 (1%)
Query: 41 SPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYG 100
+PWVEKYRP + D+ + D V + + + +P+L+L GPPGTGKT++ILA+A +L G
Sbjct: 16 NPWVEKYRPSKVVDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLG 75
Query: 101 AQYHNMILELNASDDRGIDVVRQQIQDFASTQ-SFSFGVKASVKLVLLDEADAMTKDAQF 159
Y +LELNASDDRGIDVVR +I+ FA + + G K+V+LDEAD+MT AQ
Sbjct: 76 PNYKEAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRH---KVVILDEADSMTSGAQQ 132
Query: 160 ALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLD 219
ALRR IE Y+ +TRFAL CN +KII +QSRC RF+ L + RL V+EAE +
Sbjct: 133 ALRRTIEIYSNSTRFALACNTSSKIIEPIQSRCALVRFSRLSDQQILGRLLVVVEAENVP 192
Query: 220 VTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLN 279
GL A++ +GDMR+ALN LQ+T + + +E V+ P P ++ I +L
Sbjct: 193 YVPEGLEAIIFTADGDMRQALNNLQATFSGFRFVNQENVFKVCDQPHPLHVKNIVRNVLE 252
Query: 280 ESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGC 339
F D+ + ++ G + DI+ + + M +++ M + R+ G
Sbjct: 253 SKFDDACHGLKQL-YDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAHMRICDGV 311
Query: 340 NDKLQLGSIISTFTQAR 356
LQL +++ + AR
Sbjct: 312 GSYLQLCGLLAKLSIAR 328
>gi|405964852|gb|EKC30294.1| Replication factor C subunit 2 [Crassostrea gigas]
Length = 344
Score = 219 bits (558), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 119/328 (36%), Positives = 190/328 (57%), Gaps = 6/328 (1%)
Query: 32 SGTPPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTI 91
SG P PWVEKYRP L D+ + + + ++ + +P++++ GPPGTGKT++I
Sbjct: 18 SGNPH--HEQPWVEKYRPVKLHDIVGNEETISRLEVFGRDGNVPNVIIAGPPGTGKTTSI 75
Query: 92 LAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEAD 151
L +AR + G Y + +LE+NAS+DRGIDVVR +I+ FA Q + K K+++LDEAD
Sbjct: 76 LCLARAMLGPSYRDAVLEMNASNDRGIDVVRNKIKMFAQ-QKVTLP-KGRHKIIILDEAD 133
Query: 152 AMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKH 211
+MT AQ ALRR +E Y+K TRFAL CN +KII +QSRC R++ L V +RL
Sbjct: 134 SMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYSKLTDAQVLKRLLE 193
Query: 212 VIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIE 271
V EAE + T+ GL A+V GDMR+ALN LQST + E V+ P P I+
Sbjct: 194 VCEAEAVSYTDDGLEAIVFTAQGDMRQALNNLQSTFQGFGHVNSENVFKVCDEPHPMLIQ 253
Query: 272 QISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADI 331
+ +N + +++K ++ + + G + DI+ + +P +++ + ++
Sbjct: 254 DMLQHCVNGNVEEAYKTMAHL-WKLGYSADDIITIIFRVCKNQNIPEFLKLEFIKEIGYT 312
Query: 332 EYRLSFGCNDKLQLGSIISTFTQARSAI 359
R++ G LQ+ ++++ + +SA+
Sbjct: 313 HMRIAEGVQSLLQMSALLARLCK-KSAV 339
>gi|429856209|gb|ELA31133.1| activator 1 41 kda subunit [Colletotrichum gloeosporioides Nara
gc5]
Length = 381
Score = 219 bits (558), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 107/222 (48%), Positives = 153/222 (68%), Gaps = 10/222 (4%)
Query: 32 SGTPPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTI 91
S PP +A PWVEKYRP++L+DV A V + R + LPH+L YGPPGTGKTST+
Sbjct: 25 SSQPP--RAQPWVEKYRPKTLSDVTAQDHTVTVLQRTLQASNLPHMLFYGPPGTGKTSTV 82
Query: 92 LAVARKLYGAQY-HNMILELNASDDRGIDVVRQQIQDFASTQ----SFSFGVKASV---K 143
LA+A++LYG + + +LELNASD+RGI +VR++++DFA Q + + + V K
Sbjct: 83 LALAKELYGPEMMKSRVLELNASDERGISIVREKVKDFARMQLTNPTAEYKKRYPVPPFK 142
Query: 144 LVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPV 203
+++LDEAD+MT+DAQ ALRR +E Y+K TRF LICN V +II L SRC++FRF L+
Sbjct: 143 IIILDEADSMTQDAQSALRRTMETYSKITRFCLICNYVTRIIDPLASRCSKFRFKSLDQG 202
Query: 204 HVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQS 245
+ RL+ + + EG+ + +G + AL++ GD+RKA+ LQS
Sbjct: 203 NAKRRLEDIAQNEGVQLEDGAVDALIKCSEGDLRKAITFLQS 244
>gi|432959658|ref|XP_004086351.1| PREDICTED: replication factor C subunit 2-like [Oryzias latipes]
Length = 355
Score = 219 bits (558), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 117/309 (37%), Positives = 182/309 (58%), Gaps = 3/309 (0%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP L ++ + + V ++ E +P++++ GPPGTGKT++IL +AR L G+
Sbjct: 38 PWVEKYRPLKLNEIVGNEETVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGS 97
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFAL 161
+ +LELNAS+DRGIDVVR +I+ FA Q + K K+++LDEAD+MT AQ AL
Sbjct: 98 AMKDAVLELNASNDRGIDVVRNKIKMFAQ-QKVTL-PKGRHKIIILDEADSMTDGAQQAL 155
Query: 162 RRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVT 221
RR++E Y+K TRFAL CN +KII +QSRC R+A L + RL+ VIE E L V+
Sbjct: 156 RRIMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYAKLTDGQILSRLQEVIEKERLSVS 215
Query: 222 EGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNES 281
+ GL A++ GDMR+ALN LQSTH I E V+ P P ++ + ++ +
Sbjct: 216 DDGLEAVIFTSQGDMRQALNNLQSTHSGFGYINSENVFKVCDEPHPLLVKSMLGHCVDGN 275
Query: 282 FADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCND 341
+++K + + G + DI+ + +M +++ + ++ R++ G N
Sbjct: 276 IDEAYKVVEHL-WGLGYSPEDIIGNIFRVCKTYQMAEYLKLEFIKEIGYTNMRVAEGVNS 334
Query: 342 KLQLGSIIS 350
LQ+ ++
Sbjct: 335 LLQMAGLLG 343
>gi|401623752|gb|EJS41840.1| rfc4p [Saccharomyces arboricola H-6]
Length = 323
Score = 219 bits (557), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 120/321 (37%), Positives = 190/321 (59%), Gaps = 10/321 (3%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRPQ L+D+ +++ +D + ++ + +PH+++ G PG GKT+++ +A +L G+
Sbjct: 10 PWVEKYRPQVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLGS 69
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFAL 161
Y + +LELNASDDRGIDVVR QI+ FA Q + K+++LDEAD+MT AQ AL
Sbjct: 70 SYADGVLELNASDDRGIDVVRNQIKHFA--QKKLHLPQGKHKIIILDEADSMTAGAQQAL 127
Query: 162 RRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVT 221
RR +E Y+ +TRFA CNQ NKII LQSRC R++ L V +RL +I+ E + T
Sbjct: 128 RRTMELYSNSTRFAFACNQSNKIIEPLQSRCAILRYSKLSDEDVLKRLLEIIKLEDVKYT 187
Query: 222 EGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNES 281
GL A++ GDMR+A+N LQST + + V+ +P P ++++ LL +
Sbjct: 188 NDGLEAIIFTAEGDMRQAINNLQSTVAGHGLVNADNVFKIVDSPHPLIVKKM---LLATN 244
Query: 282 FADSFKRISEMKMRKGLALVDIVR---EVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFG 338
DS + + +KG + +DIV VT + ++K VR+ ++ ++ R+ G
Sbjct: 245 LDDSIQILRTDLWKKGYSSIDIVTTSFRVTKNLTQVK--ESVRLEMIKEIGLTHMRILEG 302
Query: 339 CNDKLQLGSIISTFTQARSAI 359
LQL S+++ + + +
Sbjct: 303 VGTYLQLASMLAKIHKLNTKV 323
>gi|332818666|ref|XP_003310208.1| PREDICTED: replication factor C subunit 4 isoform 1 [Pan
troglodytes]
gi|332818668|ref|XP_003310209.1| PREDICTED: replication factor C subunit 4 isoform 2 [Pan
troglodytes]
gi|410223264|gb|JAA08851.1| replication factor C (activator 1) 4, 37kDa [Pan troglodytes]
gi|410291994|gb|JAA24597.1| replication factor C (activator 1) 4, 37kDa [Pan troglodytes]
gi|410332695|gb|JAA35294.1| replication factor C (activator 1) 4, 37kDa [Pan troglodytes]
Length = 363
Score = 219 bits (557), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 130/333 (39%), Positives = 198/333 (59%), Gaps = 8/333 (2%)
Query: 32 SGTPPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTI 91
SG K PWVEKYRP+ + +VA ++V + + LP+LL YGPPGTGKTSTI
Sbjct: 29 SGENKKAKPVPWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTI 88
Query: 92 LAVARKLYGAQYHNM-ILELNASDDRGIDVVRQQIQDFAS---TQSFSFGVKAS-VKLVL 146
LA AR+L+G + + +LELNASD+RGI VVR+++++FA + S S G K+V+
Sbjct: 89 LAAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPPFKIVI 148
Query: 147 LDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVT 206
LDEAD+MT AQ ALRR +EK +K TRF LICN V++II L SRC++FRF PL
Sbjct: 149 LDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQ 208
Query: 207 ERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTH--MASQQITEEAVYLCTGN 264
+RL + + E + +++ G+A LV++ GD+RKA+ LQS ++ITE+ + G
Sbjct: 209 QRLLDIAKKENVKISDEGIAYLVKVSEGDLRKAITFLQSATRLTGGKEITEKVITDIAGV 268
Query: 265 PLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRL 324
+ I+ + + SF D + + + + +G A +V +V V + + + +
Sbjct: 269 IPAEKIDGVFAACQSGSF-DKLEAVVKDLIDEGHAATQLVNQVHDVVVENNLSDKQKSII 327
Query: 325 MNDLADIEYRLSFGCNDKLQLGSIISTFTQARS 357
LA+++ L+ G ++ LQL S+ +T Q S
Sbjct: 328 TEKLAEVDKCLADGADEHLQLISLCATVMQQLS 360
>gi|348517074|ref|XP_003446060.1| PREDICTED: replication factor C subunit 2-like [Oreochromis
niloticus]
Length = 357
Score = 219 bits (557), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 118/322 (36%), Positives = 190/322 (59%), Gaps = 4/322 (1%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP L ++ + + V ++ E +P++++ GPPGTGKT++IL +AR L G
Sbjct: 40 PWVEKYRPLKLNEIVGNEETVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGT 99
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFAL 161
+ +LELNAS+DRGIDVVR +I+ FA Q + K K+++LDEAD+MT AQ AL
Sbjct: 100 SMKDAVLELNASNDRGIDVVRNKIKMFAQ-QKVTLP-KGRHKIIILDEADSMTDGAQQAL 157
Query: 162 RRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVT 221
RR++E Y+K TRFAL CN +KII +QSRC R++ L + RL+ V+E E L V+
Sbjct: 158 RRIMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYSKLTDGQILVRLQEVVEKERLSVS 217
Query: 222 EGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNES 281
+ GL A++ GDMR+ALN LQSTH I E V+ P P ++ + ++ +
Sbjct: 218 DDGLEAIIFTAQGDMRQALNNLQSTHSGFGYINSENVFKVCDEPHPLMVKSMLGHCVDGN 277
Query: 282 FADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCND 341
+++K + ++ G + DI+ + +M +++ + ++ R++ G N
Sbjct: 278 IDEAYKVVEQL-WALGYSPEDIIGNIFRVCKTYQMAEYLKLEFIKEIGYTHMRIAEGVNS 336
Query: 342 KLQLGSIISTFTQARSAIVAAA 363
LQ+ +++ +++A AA+
Sbjct: 337 LLQMAGLLARLC-SKTAPAAAS 357
>gi|119873156|ref|YP_931163.1| replication factor C small subunit [Pyrobaculum islandicum DSM
4184]
gi|150415671|sp|A1RV38.1|RFCS2_PYRIL RecName: Full=Replication factor C small subunit 2; Short=RFC small
subunit 2; AltName: Full=Clamp loader small subunit 2
gi|119674564|gb|ABL88820.1| replication factor C small subunit [Pyrobaculum islandicum DSM
4184]
Length = 320
Score = 219 bits (557), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 114/303 (37%), Positives = 173/303 (57%), Gaps = 3/303 (0%)
Query: 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 102
W EKYRP+S +V ++ + +PHLL YGPPGTGKT+ L +AR+LYG
Sbjct: 6 WFEKYRPRSFDEVVDLEEVKSRLREFVKSGNMPHLLFYGPPGTGKTTMALVLARELYGEY 65
Query: 103 YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALR 162
+ LELNASD+RGI+V+R+++++FA T KA KLV+LDEAD MT DAQ ALR
Sbjct: 66 WRENTLELNASDERGINVIRERVKEFARTAPVG---KAPFKLVILDEADNMTSDAQQALR 122
Query: 163 RVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTE 222
R++E Y +NTRF L+ N ++ II +QSR RF PL V RL+++ E EG+ +++
Sbjct: 123 RIMEIYAQNTRFILLANYISGIIEPIQSRVVMIRFNPLPKEAVISRLRYIAENEGVKISD 182
Query: 223 GGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESF 282
L + GDMRKA+N LQ ++ITE+ V G P+ + + L +F
Sbjct: 183 DALETIYEFTQGDMRKAINALQIAAATEKEITEDVVARALGMVSPRLLRETLQEALKGNF 242
Query: 283 ADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDK 342
+ + +I + G+ ++I+R++ V ++ +P V+ L +A+ Y G
Sbjct: 243 SKAMTQIYGFVVDGGVGELEIIRQIHREVLRLDVPEYVKPELAYIIAEAHYATLRGARGL 302
Query: 343 LQL 345
Q+
Sbjct: 303 TQI 305
>gi|395645923|ref|ZP_10433783.1| Replication factor C small subunit [Methanofollis liminatans DSM
4140]
gi|395442663|gb|EJG07420.1| Replication factor C small subunit [Methanofollis liminatans DSM
4140]
Length = 322
Score = 219 bits (557), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 111/310 (35%), Positives = 178/310 (57%), Gaps = 3/310 (0%)
Query: 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 102
W+EKYRPQ+L D+ +IV+ + LPHLL GP G GKT+ +A+AR+ +G
Sbjct: 8 WIEKYRPQTLEDMVGQEEIVERLRSYVRSGSLPHLLFTGPAGVGKTTAAVALAREFFGET 67
Query: 103 YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALR 162
+ ELNASD+RGIDVVR QI+ FA T A+ K++ LDEADA+T DAQ ALR
Sbjct: 68 WQMNFRELNASDERGIDVVRNQIKQFARTSPLG---GATFKVLFLDEADALTPDAQAALR 124
Query: 163 RVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTE 222
R +E Y + RF L CN +KII +QSRC +RF L+ V E+++ V AE + +T+
Sbjct: 125 RTMENYAQTCRFILSCNYSSKIIDPIQSRCAIYRFKGLDEAAVAEQVRRVAAAEEISLTD 184
Query: 223 GGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESF 282
+ A+ + GDMRKALN LQ + S +I +Y T P++I + F
Sbjct: 185 DAVHAIAYIAEGDMRKALNALQGAAILSDRIDARMIYETTSTAKPEEIADLLGLCTKGDF 244
Query: 283 ADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDK 342
+ + + +G+A +++ + + +M + ++V ++ + + ++R+S G + +
Sbjct: 245 TGAQGALRHLLRNRGIAPGELINQCFRALTSYQMDTALKVAYIDHIGEADFRISEGADAE 304
Query: 343 LQLGSIISTF 352
+Q+ ++I+ F
Sbjct: 305 IQMDALIALF 314
>gi|363540633|ref|YP_004894429.1| mg378 gene product [Megavirus chiliensis]
gi|448825330|ref|YP_007418261.1| putative replication factor C small subunit [Megavirus lba]
gi|350611798|gb|AEQ33242.1| putative replication factor C small subunit [Megavirus chiliensis]
gi|444236515|gb|AGD92285.1| putative replication factor C small subunit [Megavirus lba]
Length = 344
Score = 219 bits (557), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 116/304 (38%), Positives = 184/304 (60%), Gaps = 9/304 (2%)
Query: 39 KASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKL 98
K PW+EKYRP+ + + +H +I + LPHLL +GP G+GKTSTI A KL
Sbjct: 15 KNLPWIEKYRPKDMNHIISHEEITLALKSFIETKSLPHLLFFGPSGSGKTSTIKCCASKL 74
Query: 99 YGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSF---GVKASVKLVLLDEADAMTK 155
Y MILELNAS++RGI+ VR +I++F S+++ F ++ KLV+LDE D+MT
Sbjct: 75 YDKYTDCMILELNASNERGIETVRTKIKNFVSSKNTIFLPMELRNIFKLVILDEIDSMTV 134
Query: 156 DAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEA 215
+AQ LR+ IEK +K TRF LICN ++KI ALQSRC+ FRF+PL + +RLK + +
Sbjct: 135 EAQGMLRQTIEKNSKTTRFCLICNDIDKINLALQSRCSLFRFSPLGDNDMYKRLKDICKI 194
Query: 216 EGLDVTEGGLAALVRLCNGDMRKALNILQSTHM-ASQQITEEAVYLCTGNPLPKDIEQIS 274
E + T+G + A++ + GDMR A+N LQ ++ + IT VY +G+ +P+ I +I
Sbjct: 195 ENVKYTKGVIEAIINISKGDMRSAINTLQHVNLTVNDMITVNDVYKISGHCMPERILEIF 254
Query: 275 YWLLNES-----FADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLA 329
+N S D ++I+ + + + + +++ E+ V + K+ + ++ L+++ A
Sbjct: 255 KISMNLSKKQNNLYDFVEKITNIVVENNITIFNLLAELKNIVMESKLTINQKIYLIDNFA 314
Query: 330 DIEY 333
EY
Sbjct: 315 KNEY 318
>gi|346979302|gb|EGY22754.1| replication factor C subunit 2 [Verticillium dahliae VdLs.17]
Length = 380
Score = 219 bits (557), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 107/222 (48%), Positives = 151/222 (68%), Gaps = 10/222 (4%)
Query: 32 SGTPPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTI 91
S PP +A PWVEKYRP++L+DV A V + R + LPH+L YGPPGTGKTSTI
Sbjct: 26 SSQPP--RAQPWVEKYRPKTLSDVTAQDHTVTILQRTLQASNLPHMLFYGPPGTGKTSTI 83
Query: 92 LAVARKLYGAQY-HNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVK-------ASVK 143
LA+A++LYG + +LELNASD+RGI +VR+++++FA Q + + K
Sbjct: 84 LALAKELYGPELIKTRVLELNASDERGISIVREKVKNFARMQLTNPTAEYKKRYPCPPFK 143
Query: 144 LVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPV 203
+++LDEAD+MT+DAQ ALRR +E Y+K TRF LICN V +II L SRC++FRF L+
Sbjct: 144 IIILDEADSMTQDAQSALRRTMETYSKITRFCLICNYVTRIIDPLASRCSKFRFKSLDQG 203
Query: 204 HVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQS 245
+ RL+ + + EG+++ EG + AL++ GD+RKA+ LQS
Sbjct: 204 NAKRRLEEIAKNEGVELEEGAVDALIKCSEGDLRKAITFLQS 245
>gi|371943672|gb|AEX61500.1| putative replication factor C small subunit [Megavirus courdo7]
gi|425701258|gb|AFX92420.1| putative replication factor C small subunit [Megavirus courdo11]
Length = 344
Score = 219 bits (557), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 116/304 (38%), Positives = 184/304 (60%), Gaps = 9/304 (2%)
Query: 39 KASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKL 98
K PW+EKYRP+ + + +H +I + LPHLL +GP G+GKTSTI A KL
Sbjct: 15 KNLPWIEKYRPKDMNHIISHEEITLALKSFIETKSLPHLLFFGPSGSGKTSTIKCCASKL 74
Query: 99 YGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSF---GVKASVKLVLLDEADAMTK 155
Y MILELNAS++RGI+ VR +I++F S+++ F ++ KLV+LDE D+MT
Sbjct: 75 YDKYTDCMILELNASNERGIETVRTKIKNFVSSKNTIFLPMELRNIFKLVILDEIDSMTV 134
Query: 156 DAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEA 215
+AQ LR+ IEK +K TRF LICN ++KI ALQSRC+ FRF+PL + +RLK + +
Sbjct: 135 EAQGMLRQTIEKNSKTTRFCLICNDIDKINLALQSRCSLFRFSPLGDNDMYKRLKDICKI 194
Query: 216 EGLDVTEGGLAALVRLCNGDMRKALNILQSTHM-ASQQITEEAVYLCTGNPLPKDIEQIS 274
E + T+G + A++ + GDMR A+N LQ ++ + IT VY +G+ +P+ I +I
Sbjct: 195 ENVKYTKGVIEAIINISKGDMRSAINTLQHVNLTVNDMITVNDVYKISGHCMPERILEIF 254
Query: 275 YWLLNES-----FADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLA 329
+N S D ++I+ + + + + +++ E+ V + K+ + ++ L+++ A
Sbjct: 255 KISMNLSKKQNNLYDFVEKITNIVVENNITIFNLLAELKNIVMESKLTINQKIYLIDNFA 314
Query: 330 DIEY 333
EY
Sbjct: 315 KNEY 318
>gi|72072160|ref|XP_787339.1| PREDICTED: replication factor C subunit 4-like isoform 2
[Strongylocentrotus purpuratus]
gi|390359382|ref|XP_003729467.1| PREDICTED: replication factor C subunit 4-like isoform 1
[Strongylocentrotus purpuratus]
Length = 355
Score = 219 bits (557), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 122/314 (38%), Positives = 193/314 (61%), Gaps = 13/314 (4%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP+++ +VA ++V + + LP++L YGPPGTGKTSTILA +R+L+G
Sbjct: 29 PWVEKYRPRTVDEVAYQDEVVAVLKKSLQGADLPNMLFYGPPGTGKTSTILAASRELFGT 88
Query: 102 Q-YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKAS------VKLVLLDEADAMT 154
Y + +LELNASD+RGI VVR +++ FA Q+ + G++ K+++LDEAD+MT
Sbjct: 89 DMYRSRVLELNASDERGIQVVRDKVKKFA--QTAAGGIRPDGKPCPPFKIIILDEADSMT 146
Query: 155 KDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIE 214
DAQ ALRR +EK +KNT+F LICN +++II L SRC++FRF PL ++L+ + E
Sbjct: 147 YDAQAALRRTMEKQSKNTKFCLICNYISRIIEPLTSRCSKFRFKPLSKPIQGKKLREICE 206
Query: 215 AEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQ--ITEEAVYLCTGNPLPKDIEQ 272
AE ++ E L A+++L GDMRK++ LQS H ++ I E VY G K I+
Sbjct: 207 AENINCGEEALEAILKLSEGDMRKSITFLQSVHRLQREDGIRVEDVYEIAGVIPDKMIDD 266
Query: 273 ISYWLLNESFADSFKRISEMKMRKGLALVDIVREV-TMFVFKIKMPSDVRVRLMNDLADI 331
+ S+ +++ E+ ++ G + +V ++ + V + ++ + + LA I
Sbjct: 267 LIQACYGGSYEKLDEKVQEL-LQGGYSASQVVNQIFDIIVDRGELTDKQKSAIAERLAVI 325
Query: 332 EYRLSFGCNDKLQL 345
+ RL G ++ LQ+
Sbjct: 326 DKRLCDGADEGLQI 339
>gi|340992727|gb|EGS23282.1| replication factor C subunit 2-like protein [Chaetomium
thermophilum var. thermophilum DSM 1495]
Length = 384
Score = 219 bits (557), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 107/215 (49%), Positives = 149/215 (69%), Gaps = 8/215 (3%)
Query: 39 KASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKL 98
+A PWVEKYRP++L DV A V + R + LPH+L YGPPGTGKTSTILA+A++L
Sbjct: 32 RAQPWVEKYRPKTLNDVTAQDHTVSVLQRTLQASNLPHMLFYGPPGTGKTSTILALAKEL 91
Query: 99 YGAQ-YHNMILELNASDDRGIDVVRQQIQDFASTQ--SFSFGVKAS-----VKLVLLDEA 150
YG + + +LELNASD+RGI ++R++++DFA TQ + G K KL++LDEA
Sbjct: 92 YGPELMKSRVLELNASDERGISIIREKVKDFARTQLTNPPPGYKTKYPCPPFKLIILDEA 151
Query: 151 DAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLK 210
D+MT+DAQ ALRR +E Y+K TRF LICN V +II L SRC++FRF L+ + +RL+
Sbjct: 152 DSMTQDAQSALRRTMETYSKITRFCLICNYVTRIIDPLASRCSKFRFKSLDQGNARKRLE 211
Query: 211 HVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQS 245
+ + E + + +G + AL+R GD+RKA+ LQS
Sbjct: 212 EIAQLENVGLADGAVDALIRCSEGDLRKAITFLQS 246
>gi|367042572|ref|XP_003651666.1| hypothetical protein THITE_2112208 [Thielavia terrestris NRRL 8126]
gi|346998928|gb|AEO65330.1| hypothetical protein THITE_2112208 [Thielavia terrestris NRRL 8126]
Length = 383
Score = 218 bits (556), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 107/215 (49%), Positives = 150/215 (69%), Gaps = 8/215 (3%)
Query: 39 KASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKL 98
+ PWVEKYRP++L+DV A V + R + LPH+L YGPPGTGKTSTILA+A++L
Sbjct: 32 RVQPWVEKYRPKTLSDVTAQDHTVSVLQRTLQASNLPHMLFYGPPGTGKTSTILALAKEL 91
Query: 99 YGAQ-YHNMILELNASDDRGIDVVRQQIQDFASTQ--SFSFGVKA-----SVKLVLLDEA 150
YG + + +LELNASD+RGI +VR++++DFA TQ + G KA K+++LDEA
Sbjct: 92 YGPELMKSRVLELNASDERGISIVREKVKDFARTQLTNPPPGYKARYPCPPFKIIILDEA 151
Query: 151 DAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLK 210
D+MT+DAQ ALRR +E Y+K TRF LICN V +II L SRC++FRF L+ + RL+
Sbjct: 152 DSMTQDAQSALRRTMETYSKITRFCLICNYVTRIIDPLASRCSKFRFKSLDQGNARRRLE 211
Query: 211 HVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQS 245
+ EG+ + +G + AL++ +GD+RKA+ LQS
Sbjct: 212 EIARLEGVGMEDGAVDALIKCSDGDLRKAITFLQS 246
>gi|355784873|gb|EHH65724.1| hypothetical protein EGM_02550 [Macaca fascicularis]
Length = 363
Score = 218 bits (556), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 134/350 (38%), Positives = 202/350 (57%), Gaps = 10/350 (2%)
Query: 17 NQNLKPKDNGKNVIV--SGTPPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRL 74
++L KD G SG K PWVEKYRP+ + +VA ++V + + L
Sbjct: 12 TKSLPTKDRGVAATAGSSGENKKAKPVPWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADL 71
Query: 75 PHLLLYGPPGTGKTSTILAVARKLYGAQYHNM-ILELNASDDRGIDVVRQQIQDFAS--- 130
P+LL YGPPGTGKTSTILA AR+L+G + + +LELNASD+RGI VVR+++++FA
Sbjct: 72 PNLLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTV 131
Query: 131 TQSFSFGVKAS-VKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQ 189
+ S S G K+V+LDEAD+MT AQ ALRR +EK +K TRF LICN V++II L
Sbjct: 132 SGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLT 191
Query: 190 SRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTH-- 247
SRC++FRF PL +RL + E E + +++ G+A LV++ GD+RKA+ LQS
Sbjct: 192 SRCSKFRFKPLSDKIQQQRLLDIAEKENVKISDEGIAYLVKVSEGDLRKAITFLQSATRL 251
Query: 248 MASQQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREV 307
++ITE + G + I+ + + SF D + + + + +G A V ++
Sbjct: 252 TGGKEITERVITDIAGVIPAEKIDGVFAACQSGSF-DKLEAVVKDLIDEGHAATQFVSQL 310
Query: 308 TMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDKLQLGSIISTFTQARS 357
V + + + + LA+++ L+ G ++ LQL S+ +T Q S
Sbjct: 311 HDVVVENNLSDKQKSIITEKLAEVDKCLADGADEHLQLISLCATVMQQLS 360
>gi|18312778|ref|NP_559445.1| replication factor C small subunit [Pyrobaculum aerophilum str.
IM2]
gi|42559510|sp|Q8ZWS2.1|RFCS2_PYRAE RecName: Full=Replication factor C small subunit 2; Short=RFC small
subunit 2; AltName: Full=Clamp loader small subunit 2
gi|18160261|gb|AAL63627.1| replication factor C small subunit [Pyrobaculum aerophilum str.
IM2]
Length = 319
Score = 218 bits (556), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 114/303 (37%), Positives = 176/303 (58%), Gaps = 3/303 (0%)
Query: 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 102
W EKYRP+S +V ++ + + +PHLL YGPPGTGKT+ L +AR+LYG
Sbjct: 6 WFEKYRPRSFDEVVDLEEVKARLRQFVKAGNMPHLLFYGPPGTGKTTMALVLARELYGEY 65
Query: 103 YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALR 162
+ LELNASD+RGI+V+R+++++FA T KA KLV+LDEAD MT DAQ ALR
Sbjct: 66 WRENTLELNASDERGINVIRERVKEFARTAPVG---KAPFKLVILDEADNMTSDAQQALR 122
Query: 163 RVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTE 222
R++E Y +NTRF L+ N V+ II +QSR RF+PL V RL+++ E EG+ V++
Sbjct: 123 RIMEIYAQNTRFILLANYVSGIIEPIQSRTVMIRFSPLPKEAVFARLRYIAENEGVKVSD 182
Query: 223 GGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESF 282
L A+ GDMR+A+N LQ S+ +TEE V G P+ + + Y + SF
Sbjct: 183 DALEAIYEFTQGDMRRAINALQIAATVSKAVTEEVVAKALGMVSPRLLRETLYEAVKGSF 242
Query: 283 ADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDK 342
+ +I G+ ++I++++ + ++ + V+ + +A+ Y + G +
Sbjct: 243 GKAATQIYGFVADGGVGELEIIKQIHREMLRLDVQEYVKPEIAYIIAEAHYAILRGAHGL 302
Query: 343 LQL 345
Q+
Sbjct: 303 TQI 305
>gi|225426826|ref|XP_002283246.1| PREDICTED: replication factor C subunit 2 [Vitis vinifera]
gi|297742576|emb|CBI34725.3| unnamed protein product [Vitis vinifera]
Length = 330
Score = 218 bits (556), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 121/316 (38%), Positives = 182/316 (57%), Gaps = 5/316 (1%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP +AD+ + D V + + + +P+L+L GPPGTGKT+++LA+A +L GA
Sbjct: 13 PWVEKYRPTKVADIVGNEDTVSRLQVIARDGNMPNLILSGPPGTGKTTSVLALAHELLGA 72
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQ-SFSFGVKASVKLVLLDEADAMTKDAQFA 160
Y +LELNASDDRGIDVVR +I+ FA + + G S K+V+LDEAD+MT AQ A
Sbjct: 73 NYREAVLELNASDDRGIDVVRNKIKMFAQKKVTLPSG---SHKIVILDEADSMTTGAQQA 129
Query: 161 LRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDV 220
LRR +E Y+ +TRFAL CN +KII +QSRC RF+ L + RL V+EAE +
Sbjct: 130 LRRTMEIYSNSTRFALACNISSKIIEPIQSRCAIVRFSRLSDQEILGRLMVVVEAEKVPF 189
Query: 221 TEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNE 280
GL A++ +GDMR+ALN LQ+T+ + + +E V+ P P ++ + +L
Sbjct: 190 VPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEG 249
Query: 281 SFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCN 340
F D+ + ++ G + DI+ + + M +++ M + R+ G
Sbjct: 250 KFDDACYGLKQL-YDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAHMRICDGVG 308
Query: 341 DKLQLGSIISTFTQAR 356
LQL +++ R
Sbjct: 309 SYLQLCGLLAKLAVVR 324
>gi|348568402|ref|XP_003469987.1| PREDICTED: replication factor C subunit 2-like [Cavia porcellus]
Length = 352
Score = 218 bits (556), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 121/321 (37%), Positives = 184/321 (57%), Gaps = 3/321 (0%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP L ++ + D V ++ E +P++++ GPPGTGKT++IL +AR L G
Sbjct: 35 PWVEKYRPIKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGP 94
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFAL 161
+ +LELNAS+DRGIDVVR +I+ FA Q + + K+++LDEAD+MT AQ AL
Sbjct: 95 AMKDAVLELNASNDRGIDVVRNKIKMFAQ-QKVTLP-RGRHKIIILDEADSMTDGAQQAL 152
Query: 162 RRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVT 221
RR +E Y+K TRFAL CN +KII +QSRC R+ L V RL VIE E + T
Sbjct: 153 RRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQVLARLLSVIEKEAVPYT 212
Query: 222 EGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNES 281
+ GL A++ GDMR+ALN LQST I E V+ P P ++++ ++ +
Sbjct: 213 DDGLEAIIFTAQGDMRQALNNLQSTFSGFGFINSENVFKVCDEPHPLLVKEMIQHCVSAN 272
Query: 282 FADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCND 341
D++K ++ + G + DI+ V +M +++ + ++ R++ G N
Sbjct: 273 IDDAYKILAHL-WHLGYSPEDIIGNVFRVCKTFQMAEYLKLEFIKEIGYTHMRVAEGVNS 331
Query: 342 KLQLGSIISTFTQARSAIVAA 362
LQ+ +++ Q A VA+
Sbjct: 332 LLQMAGLLARLCQKTMAPVAS 352
>gi|6324478|ref|NP_014547.1| replication factor C subunit 4 [Saccharomyces cerevisiae S288c]
gi|730503|sp|P40339.1|RFC4_YEAST RecName: Full=Replication factor C subunit 4; Short=Replication
factor C4; AltName: Full=Activator 1 37 kDa subunit
gi|499704|gb|AAA34970.1| 37 kDa subunit [Saccharomyces cerevisiae]
gi|600464|emb|CAA58185.1| orf 00923 [Saccharomyces cerevisiae]
gi|841468|gb|AAC49063.1| Rfc4p [Saccharomyces cerevisiae]
gi|1419942|emb|CAA99106.1| RFC4 [Saccharomyces cerevisiae]
gi|151945540|gb|EDN63781.1| replication factor C subunit 4 [Saccharomyces cerevisiae YJM789]
gi|207341418|gb|EDZ69479.1| YOL094Cp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|256271406|gb|EEU06467.1| Rfc4p [Saccharomyces cerevisiae JAY291]
gi|259149392|emb|CAY86196.1| Rfc4p [Saccharomyces cerevisiae EC1118]
gi|285814797|tpg|DAA10690.1| TPA: replication factor C subunit 4 [Saccharomyces cerevisiae
S288c]
gi|323335629|gb|EGA76912.1| Rfc4p [Saccharomyces cerevisiae Vin13]
gi|323346696|gb|EGA80980.1| Rfc4p [Saccharomyces cerevisiae Lalvin QA23]
gi|349581076|dbj|GAA26234.1| K7_Rfc4p [Saccharomyces cerevisiae Kyokai no. 7]
gi|365763163|gb|EHN04693.1| Rfc4p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
gi|392296734|gb|EIW07836.1| Rfc4p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 323
Score = 218 bits (556), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 121/312 (38%), Positives = 186/312 (59%), Gaps = 10/312 (3%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRPQ L+D+ +++ +D + ++ + +PH+++ G PG GKT+++ +A +L G
Sbjct: 10 PWVEKYRPQVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLGR 69
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFAL 161
Y + +LELNASDDRGIDVVR QI+ FA + K K+V+LDEAD+MT AQ AL
Sbjct: 70 SYADGVLELNASDDRGIDVVRNQIKHFAQKKLHLPPGKH--KIVILDEADSMTAGAQQAL 127
Query: 162 RRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVT 221
RR +E Y+ +TRFA CNQ NKII LQSRC R++ L V +RL +I+ E + T
Sbjct: 128 RRTMELYSNSTRFAFACNQSNKIIEPLQSRCAILRYSKLSDEDVLKRLLQIIKLEDVKYT 187
Query: 222 EGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNES 281
GL A++ GDMR+A+N LQST + + V+ +P P ++++ LL +
Sbjct: 188 NDGLEAIIFTAEGDMRQAINNLQSTVAGHGLVNADNVFKIVDSPHPLIVKKM---LLASN 244
Query: 282 FADSFKRISEMKMRKGLALVDIVR---EVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFG 338
DS + + +KG + +DIV VT + ++K VR+ ++ ++ R+ G
Sbjct: 245 LEDSIQILRTDLWKKGYSSIDIVTTSFRVTKNLAQVK--ESVRLEMIKEIGLTHMRILEG 302
Query: 339 CNDKLQLGSIIS 350
LQL S+++
Sbjct: 303 VGTYLQLASMLA 314
>gi|50287127|ref|XP_445993.1| hypothetical protein [Candida glabrata CBS 138]
gi|49525300|emb|CAG58917.1| unnamed protein product [Candida glabrata]
Length = 352
Score = 218 bits (556), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 123/330 (37%), Positives = 189/330 (57%), Gaps = 21/330 (6%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP+ L DVAA +V+ + + S LPH+L YGPPGTGKTSTILA+ ++L+G
Sbjct: 26 PWVEKYRPKKLDDVAAQDHVVNVLKKTLSSANLPHMLFYGPPGTGKTSTILALTKELFGP 85
Query: 102 QY-HNMILELNASDDRGIDVVRQQIQDFA-------STQSFSFGVKASVKLVLLDEADAM 153
+ +LELNASD+RGI +VR+++++FA S + K+++LDEAD+M
Sbjct: 86 ELMKTRVLELNASDERGISIVREKVKNFARLTVSKPSKHDLENYLCPPYKIIILDEADSM 145
Query: 154 TKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVI 213
T DAQ ALRR +E Y+ TRF LICN V +II L SRC++FRF L+ + +RLK+V
Sbjct: 146 TADAQSALRRTMETYSTVTRFCLICNYVTRIIDPLASRCSKFRFKSLDSSNALQRLKYVA 205
Query: 214 EAEGLDVTEGGLAALVRLCNGDMRKALNILQST-----HMASQQITEEAVYLCTGNPLPK 268
E EG+ V G L ++ + GD+R+A+ +LQS + ++++E V
Sbjct: 206 EEEGVKVKAGSLETILDISAGDLRRAITLLQSASKNIGYSGEDEVSKELVEELAAVVPES 265
Query: 269 DIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDL 328
I+QI + F + I E R G + +V ++ + K S+ N +
Sbjct: 266 SIKQIVELVATRDFNKISEYIQEF-TRNGWSAASVVSQLHDYYIK---SSEYDTAFKNKV 321
Query: 329 A----DIEYRLSFGCNDKLQLGSIISTFTQ 354
+ D + +L+ G N+ +QL +++ +Q
Sbjct: 322 SIILFDTDSKLTNGTNEHIQLLNMLIKISQ 351
>gi|388454302|ref|NP_001253606.1| replication factor C subunit 4 [Macaca mulatta]
gi|355560107|gb|EHH16835.1| hypothetical protein EGK_12194 [Macaca mulatta]
gi|380815324|gb|AFE79536.1| replication factor C subunit 4 [Macaca mulatta]
gi|383420509|gb|AFH33468.1| replication factor C subunit 4 [Macaca mulatta]
Length = 363
Score = 218 bits (555), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 134/350 (38%), Positives = 202/350 (57%), Gaps = 10/350 (2%)
Query: 17 NQNLKPKDNGKNVIV--SGTPPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRL 74
++L KD G SG K PWVEKYRP+ + +VA ++V + + L
Sbjct: 12 TKSLLTKDRGVAATAGSSGENKKAKPVPWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADL 71
Query: 75 PHLLLYGPPGTGKTSTILAVARKLYGAQYHNM-ILELNASDDRGIDVVRQQIQDFAS--- 130
P+LL YGPPGTGKTSTILA AR+L+G + + +LELNASD+RGI VVR+++++FA
Sbjct: 72 PNLLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTV 131
Query: 131 TQSFSFGVKAS-VKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQ 189
+ S S G K+V+LDEAD+MT AQ ALRR +EK +K TRF LICN V++II L
Sbjct: 132 SGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLT 191
Query: 190 SRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTH-- 247
SRC++FRF PL +RL + E E + +++ G+A LV++ GD+RKA+ LQS
Sbjct: 192 SRCSKFRFKPLSDKIQQQRLLDIAEKENVKISDEGIAYLVKVSEGDLRKAITFLQSATRL 251
Query: 248 MASQQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREV 307
++ITE + G + I+ + + SF D + + + + +G A V ++
Sbjct: 252 TGGKEITERVITDIAGVIPAEKIDGVFAACQSGSF-DKLEAVVKDLIDEGHAATQFVSQL 310
Query: 308 TMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDKLQLGSIISTFTQARS 357
V + + + + LA+++ L+ G ++ LQL S+ +T Q S
Sbjct: 311 HDVVVENNLSDKQKSIITEKLAEVDKCLADGADEHLQLISLCATVMQQLS 360
>gi|312136661|ref|YP_004003998.1| replication factor c small subunit [Methanothermus fervidus DSM
2088]
gi|311224380|gb|ADP77236.1| replication factor C small subunit [Methanothermus fervidus DSM
2088]
Length = 318
Score = 218 bits (555), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 115/314 (36%), Positives = 182/314 (57%), Gaps = 8/314 (2%)
Query: 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 102
W EKYRP+ L DV + +V + + + LP+LL GP G GKT+ LA+AR++ G
Sbjct: 5 WTEKYRPKVLDDVVNQKHVVSRLKKYVEKKTLPNLLFAGPAGVGKTTVALALAREILGEY 64
Query: 103 YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALR 162
+ LELNASD RGID VR +I++F + + A ++V LDE D MT+DAQ ALR
Sbjct: 65 WQQNFLELNASDARGIDTVRTEIKNFCRLRP----INAPFRIVFLDEVDNMTRDAQQALR 120
Query: 163 RVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTE 222
R +E Y + F L CN +KII +QSRC FRF PL+ + +RLK++ E E +D E
Sbjct: 121 REMEMYAETATFILSCNYSSKIIEPVQSRCVVFRFLPLKSKDIIKRLKYICEKENVDYEE 180
Query: 223 GGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESF 282
L A+V GD+RKA+NILQ+ + ITE+ +Y P+D+ ++ LN F
Sbjct: 181 KALDAIVYFAEGDLRKAINILQAAAALDKTITEDDIYDVVSKARPEDVRKMIVKALNGEF 240
Query: 283 ADSFKRISEMKMRKGLA---LVD-IVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFG 338
+ + + E+ + G++ L+D I RE + ++ + V+ ++ + + ++R+ G
Sbjct: 241 LKAREMLREIMISYGVSGEDLIDQIYREFSRLAIDGEVDEETYVKFVDVIGEYDFRIREG 300
Query: 339 CNDKLQLGSIISTF 352
N ++QL S++++
Sbjct: 301 ANPRIQLESLLASL 314
>gi|308810180|ref|XP_003082399.1| Replication factor C 2 (ISS) [Ostreococcus tauri]
gi|116060867|emb|CAL57345.1| Replication factor C 2 (ISS) [Ostreococcus tauri]
Length = 354
Score = 218 bits (555), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 131/320 (40%), Positives = 183/320 (57%), Gaps = 13/320 (4%)
Query: 34 TPPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILA 93
T P I PW+EKYRP++L D+ + D VD + + + +P+L+ GPPG GKTS I
Sbjct: 15 TAP-IDTLPWLEKYRPKTLDDIVGNDDAVDRMRSMVASGFMPNLMFCGPPGCGKTSAIGV 73
Query: 94 VARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQ-SFSFGVKASVKLVLLDEADA 152
++R L G +Y + +LE+NASD+RGIDVVR +I+ FA + + G K+V+LDEADA
Sbjct: 74 LSRALLGDKYKDAVLEMNASDERGIDVVRNKIKMFAQKKVTLPPG---RTKIVILDEADA 130
Query: 153 MTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHV 212
MT AQ ALRR +E ++ TRF L CN +K+I +QSRC RF L V +RL V
Sbjct: 131 MTTAAQQALRRTMEIFSATTRFCLACNTSDKVIEPIQSRCAIVRFVKLTDEQVLKRLMTV 190
Query: 213 IEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQ 272
IE E + GL A+V +GDMR+ALN LQST I EE V+ P P +
Sbjct: 191 IEREKVAYVPKGLEAIVFTADGDMRQALNNLQSTAQGFGLIDEENVFRVCDQPHPNIVRD 250
Query: 273 ISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMF-VFK----IKMPSDVRVRLMND 327
++L E+ D++ RI + KG ++ DI+ TM+ V K MP +++ L+
Sbjct: 251 ALSFILQENIDDAYARIKSL-YDKGYSVFDIIG--TMYRVCKNYDDNAMPEYIKLELIRI 307
Query: 328 LADIEYRLSFGCNDKLQLGS 347
+ RLS GC LQL
Sbjct: 308 IGFTHLRLSEGCATMLQLAG 327
>gi|190407255|gb|EDV10522.1| replication factor C subunit 4 [Saccharomyces cerevisiae RM11-1a]
Length = 323
Score = 218 bits (555), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 121/312 (38%), Positives = 186/312 (59%), Gaps = 10/312 (3%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRPQ L+D+ +++ +D + ++ + +PH+++ G PG GKT+++ +A +L G
Sbjct: 10 PWVEKYRPQVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLGR 69
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFAL 161
Y + +LELNASDDRGIDVVR QI+ FA + K K+V+LDEAD+MT AQ AL
Sbjct: 70 SYADGVLELNASDDRGIDVVRNQIKHFAQKKLHLPPGKH--KIVILDEADSMTAGAQQAL 127
Query: 162 RRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVT 221
RR +E Y+ +TRFA CNQ NKII LQSRC R++ L V +RL +I+ E + T
Sbjct: 128 RRTMELYSNSTRFAFACNQSNKIIEPLQSRCAILRYSKLSDEDVLKRLLQIIKLEDVKYT 187
Query: 222 EGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNES 281
GL A++ GDMR+A+N LQST + + V+ +P P ++++ LL +
Sbjct: 188 NDGLEAIIFTAEGDMRQAINNLQSTVAGHGLVNADNVFKIVDSPHPLIVKKM---LLASN 244
Query: 282 FADSFKRISEMKMRKGLALVDIVR---EVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFG 338
DS + + +KG + +DIV VT + ++K VR+ ++ ++ R+ G
Sbjct: 245 LEDSIQILRTDLWKKGYSSIDIVTTSFRVTKNLAQVK--ESVRLEMIKEIGLTHMRILEG 302
Query: 339 CNDKLQLGSIIS 350
LQL S+++
Sbjct: 303 VGTYLQLASMLA 314
>gi|323307063|gb|EGA60346.1| Rfc4p [Saccharomyces cerevisiae FostersO]
Length = 382
Score = 218 bits (555), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 127/332 (38%), Positives = 195/332 (58%), Gaps = 12/332 (3%)
Query: 22 PKDNGKNVIVSGTPPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYG 81
P+D K++I+S T PWVEKYRPQ L+D+ +++ +D + ++ + +PH+++ G
Sbjct: 51 PEDIKKSLIMSKTLS--LQLPWVEKYRPQVLSDIVGNKETIDRLQQIAKDGNMPHMIISG 108
Query: 82 PPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKAS 141
PG GKT+++ +A +L G Y + +LELNASDDRGI VVR QI+ FA + K
Sbjct: 109 MPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRGIXVVRNQIKHFAQKKLHLPPGKH- 167
Query: 142 VKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLE 201
K+V+LDEAD+MT AQ ALRR +E Y+ +TRFA CNQ NKII LQSRC R++ L
Sbjct: 168 -KIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSRCAILRYSKLS 226
Query: 202 PVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLC 261
V +RL +I+ E + T GL A++ GDMR+A+N LQST + + V+
Sbjct: 227 DEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEGDMRQAINNLQSTVAGHGLVNADNVFKI 286
Query: 262 TGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVR---EVTMFVFKIKMPS 318
+P P ++++ LL + DS + + +KG + +DIV VT + ++K
Sbjct: 287 VDSPHPLIVKKM---LLASNLEDSIQILRTDLWKKGYSSIDIVTTSFRVTKNLAQVK--E 341
Query: 319 DVRVRLMNDLADIEYRLSFGCNDKLQLGSIIS 350
VR+ +M ++ R+ G LQL S+++
Sbjct: 342 SVRLEMMKEIGLTHMRILEGVGTYLQLASMLA 373
>gi|343113485|gb|AEL87701.1| replication factor C 4 [Strongylocentrotus nudus]
Length = 355
Score = 218 bits (555), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 123/317 (38%), Positives = 196/317 (61%), Gaps = 19/317 (5%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP+++ +VA ++V + + LP++L YGPPGTGKTSTILA +R+L+GA
Sbjct: 29 PWVEKYRPRTVDEVAYQDEVVAVLKKSLQGADLPNMLFYGPPGTGKTSTILAASRELFGA 88
Query: 102 Q-YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKAS------VKLVLLDEADAMT 154
Y + +LELNASD+RGI VVR +++ FA Q+ + G++ K+++LDEAD+MT
Sbjct: 89 DMYRSRVLELNASDERGIQVVRDKVKKFA--QTAAGGIRPDGKPRPPFKIIILDEADSMT 146
Query: 155 KDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIE 214
DAQ ALRR +EK +KNT+F LICN +++II L SRC++FRF PL ++L+ + E
Sbjct: 147 NDAQAALRRTMEKQSKNTKFCLICNYISRIIEPLTSRCSKFRFKPLSKPIQGKKLREICE 206
Query: 215 AEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQ--ITEEAVYLCTGNPLPKDIEQ 272
E ++ E L A+++L GDMRK++ LQS H ++ I E VY G +P ++
Sbjct: 207 VENINCGEEALDAILKLSEGDMRKSITFLQSVHRLQREDGIRVEDVYEIAG-VIP---DR 262
Query: 273 ISYWLLNESFADSFKRISEMK---MRKGLALVDIVREV-TMFVFKIKMPSDVRVRLMNDL 328
I L+ + S++++ E ++ G + +V ++ + V + ++ + + L
Sbjct: 263 IIDDLIQSCYGGSYEKLDEKVQELLQDGYSASQVVNQIFDIIVERGELTDTQKSAIAERL 322
Query: 329 ADIEYRLSFGCNDKLQL 345
A I+ RL G ++ LQ+
Sbjct: 323 AVIDKRLCDGADEGLQI 339
>gi|384475811|ref|NP_001245051.1| replication factor C subunit 2 [Macaca mulatta]
gi|402863243|ref|XP_003895940.1| PREDICTED: replication factor C subunit 2 isoform 1 [Papio anubis]
gi|355560573|gb|EHH17259.1| hypothetical protein EGK_13612 [Macaca mulatta]
gi|355761341|gb|EHH61789.1| hypothetical protein EGM_19875 [Macaca fascicularis]
gi|383420507|gb|AFH33467.1| replication factor C subunit 2 isoform 1 [Macaca mulatta]
gi|384948612|gb|AFI37911.1| replication factor C subunit 2 isoform 1 [Macaca mulatta]
gi|387542032|gb|AFJ71643.1| replication factor C subunit 2 isoform 1 [Macaca mulatta]
Length = 352
Score = 218 bits (555), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 119/321 (37%), Positives = 185/321 (57%), Gaps = 3/321 (0%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP L ++ + D V ++ E +P++++ GPPGTGKT++IL +AR L G
Sbjct: 35 PWVEKYRPVKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGP 94
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFAL 161
+ +LELNAS+DRGIDVVR +I+ FA Q + K K+++LDEAD+MT AQ AL
Sbjct: 95 ALKDAVLELNASNDRGIDVVRNKIKMFAQ-QKVTLP-KGRHKIIILDEADSMTDGAQQAL 152
Query: 162 RRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVT 221
RR +E Y+K TRFAL CN +KII +QSRC R+ L + RL +VIE E + T
Sbjct: 153 RRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQILARLMNVIEKERVPYT 212
Query: 222 EGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNES 281
+ GL A++ GDMR+ALN LQST I E V+ P P ++++ +N +
Sbjct: 213 DDGLEAIIFTAQGDMRQALNNLQSTFSGFGFINSENVFKVCDEPHPLLVKEMIQHCVNAN 272
Query: 282 FADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCND 341
+++K ++ + G + DI+ + +M +++ + ++ +++ G N
Sbjct: 273 IDEAYKILAHL-WHLGYSPEDIIGNIFRVCKTFQMAEYLKLEFIKEIGYTHMKIAEGVNS 331
Query: 342 KLQLGSIISTFTQARSAIVAA 362
LQ+ +++ Q A VA+
Sbjct: 332 LLQMAGLLARLCQKTMAPVAS 352
>gi|16082630|ref|NP_394950.1| replication factor C small subunit [Thermoplasma acidophilum DSM
1728]
gi|73920752|sp|Q9HI47.2|RFCS_THEAC RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
Length = 318
Score = 218 bits (555), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 112/316 (35%), Positives = 190/316 (60%), Gaps = 6/316 (1%)
Query: 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 102
W EKYRP+SL+++ + + + + +PHLL G GTGKTST +A+A +L+G
Sbjct: 5 WTEKYRPKSLSEIYGEDENIQKLKSFVEKKEIPHLLFAGSVGTGKTSTAIALAIELFGDS 64
Query: 103 YHNMILELNASDDRGIDVVRQQIQDFASTQ-SFSFGVKASVKLVLLDEADAMTKDAQFAL 161
+ ++E+NAS++ GIDV+R +I+D A + S G K ++ LDEAD +T +AQ AL
Sbjct: 65 WKENMVEMNASNENGIDVIRNKIKDIARIKPSNPLGFK----ILFLDEADQLTAEAQAAL 120
Query: 162 RRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVT 221
RR +E Y++ TRF CN +KIIP +QSR RF P+ +++ +L+ + + EG +
Sbjct: 121 RRTMEIYSETTRFIFSCNYSSKIIPPIQSRTVVMRFRPVPDEYISRKLQEIAKNEGFQID 180
Query: 222 EGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNES 281
E + ALV + GDMRKA+N+LQ+ + S +I+ + +Y G P+ I+++ +N
Sbjct: 181 EESMHALVEVSAGDMRKAINVLQAVY-TSGEISPKKIYEIIGYASPEKIQKMISRAINGL 239
Query: 282 FADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCND 341
F ++ + + M + GL+ +DIVR + +V + ++ ++ LAD E+R+ G ND
Sbjct: 240 FDEAREIVDGMLIYDGLSGIDIVRSLHSYVRSSMISPKQKIEIIKALADAEFRIVEGSND 299
Query: 342 KLQLGSIISTFTQARS 357
++QL ++I+ + S
Sbjct: 300 RIQLDALIAKLAEIGS 315
>gi|121705176|ref|XP_001270851.1| DNA replication factor C subunit Rfc2, putative [Aspergillus
clavatus NRRL 1]
gi|119398997|gb|EAW09425.1| DNA replication factor C subunit Rfc2, putative [Aspergillus
clavatus NRRL 1]
Length = 391
Score = 218 bits (554), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 108/215 (50%), Positives = 148/215 (68%), Gaps = 11/215 (5%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYG- 100
PWVEKYRP++L DVAA + R + LPH+L YGPPGTGKTSTILA+A+ L+G
Sbjct: 37 PWVEKYRPKTLDDVAAQDHTTKVLQRTLQASNLPHMLFYGPPGTGKTSTILALAKSLFGP 96
Query: 101 AQYHNMILELNASDDRGIDVVRQQIQDFASTQ-SFSFGVKAS---------VKLVLLDEA 150
A Y + ILELNASD+RGI +VR++I+ FA TQ S G+ +S K+++LDEA
Sbjct: 97 ALYRSRILELNASDERGIGIVREKIKGFARTQLSQPTGLDSSYFEQYPCPPFKIIILDEA 156
Query: 151 DAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLK 210
D+MT+DAQ ALRR +E+Y++ TRF L+CN V +II L SRC++FRF PL+ ERLK
Sbjct: 157 DSMTQDAQSALRRTMEQYSRITRFCLVCNYVTRIIEPLASRCSKFRFKPLDNSAAGERLK 216
Query: 211 HVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQS 245
+ E E L++ +G + L+ GD+R+A+ +QS
Sbjct: 217 SIAEQENLNLEDGVIEKLISCGEGDLRRAITYMQS 251
>gi|48477659|ref|YP_023365.1| replication factor C small subunit [Picrophilus torridus DSM 9790]
gi|50400868|sp|Q6L1I0.1|RFCS_PICTO RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|48430307|gb|AAT43172.1| replication factor C, small subunit [Picrophilus torridus DSM 9790]
Length = 318
Score = 218 bits (554), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 110/318 (34%), Positives = 187/318 (58%), Gaps = 4/318 (1%)
Query: 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 102
W EKYRP+ L DV + ++T+ LPHL+ GP GTGKTST +A+ +L+G
Sbjct: 5 WTEKYRPKRLDDVIGEDENINTLKSFVKNGDLPHLIFAGPAGTGKTSTAIALTIELFGDD 64
Query: 103 YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALR 162
+ LELNASD+RGID++R I+DFA + + K K++ LDEAD +T +AQ ALR
Sbjct: 65 WKENFLELNASDERGIDIIRNNIKDFAKIRPSN---KLGFKIIFLDEADQLTNEAQAALR 121
Query: 163 RVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTE 222
R +E + TRF CN +KIIP +QSRC RF PL+ + +L+ + + E D+ +
Sbjct: 122 RTMEMFYSTTRFIFSCNYSSKIIPPIQSRCVVLRFRPLDKEAMERKLREIAKNEKFDIDD 181
Query: 223 GGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESF 282
L A+ + +GDMRKA+N++Q+ ++ +I +Y +G + + + LN +F
Sbjct: 182 DSLDAIYEISDGDMRKAINVMQAIQ-STGEIKPSKIYEISGEINKNEYKNLISLSLNGAF 240
Query: 283 ADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDK 342
+D+ + +M + GL+ +DI+R + + ++ + ++ ++ LA+ E+R+S G +D
Sbjct: 241 SDAKSLLDKMLVDYGLSGIDIIRGMHSAIRNERIANRQKLEILIALAEFEFRISQGGSDN 300
Query: 343 LQLGSIISTFTQARSAIV 360
+Q+ ++++ + S I
Sbjct: 301 VQMDALLARISYIGSEIT 318
>gi|260800650|ref|XP_002595211.1| hypothetical protein BRAFLDRAFT_284971 [Branchiostoma floridae]
gi|229280455|gb|EEN51223.1| hypothetical protein BRAFLDRAFT_284971 [Branchiostoma floridae]
Length = 364
Score = 218 bits (554), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 129/325 (39%), Positives = 197/325 (60%), Gaps = 15/325 (4%)
Query: 41 SPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYG 100
+PWVEKYRP+++ DVA ++V + + LP+LLLYGPPGTGKTSTILA AR+L+G
Sbjct: 37 APWVEKYRPRTVDDVAFQEEVVAVLKKSLQGADLPNLLLYGPPGTGKTSTILAAARELFG 96
Query: 101 AQ-YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKAS------VKLVLLDEADAM 153
A +LELNASD+RGI VVR +++ F +Q + G + K+V+LDEAD+M
Sbjct: 97 ADLMKQRVLELNASDERGIQVVRDKVKTF--SQLSASGTRPDGRPCPPFKIVILDEADSM 154
Query: 154 TKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVI 213
T AQ +LRR +EK TK TRF LICN +++II L SRC +FRF PL + +RL+H+
Sbjct: 155 TNPAQASLRRTMEKETKTTRFCLICNYISRIIEPLASRCAKFRFKPLSSDILQKRLRHIA 214
Query: 214 EAEGLDVTEGGLAALVRLCNGDMRKALNILQSTH--MASQQITEEAVYLCTGNPLPKD-I 270
EAE ++ + + AL+ GD+RKA+ LQS H ITE+ + TG +PKD +
Sbjct: 215 EAEKVNAEDKAITALIDTSEGDLRKAITYLQSAHRLKGEDAITEKDILEITGV-IPKDMV 273
Query: 271 EQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMND-LA 329
Q+ ++S+ K + ++K +G + ++ ++ V + +D + ++ + +A
Sbjct: 274 SQLIQTCYSDSYEKLEKSVKDLKA-EGYSAEQVILQIHDEVLPREDLTDKQKSVIAEKIA 332
Query: 330 DIEYRLSFGCNDKLQLGSIISTFTQ 354
+ RL+ G ++ LQL + S Q
Sbjct: 333 VCDQRLADGGDEFLQLMDLTSVMMQ 357
>gi|115398522|ref|XP_001214850.1| activator 1 37 kDa subunit [Aspergillus terreus NIH2624]
gi|114191733|gb|EAU33433.1| activator 1 37 kDa subunit [Aspergillus terreus NIH2624]
Length = 352
Score = 218 bits (554), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 127/334 (38%), Positives = 190/334 (56%), Gaps = 11/334 (3%)
Query: 25 NGKNVIVSGTPPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPG 84
NG + +G PPD + PWVEKYRP L DV + + ++ + + + +PH+++ G PG
Sbjct: 13 NGLKAVTAGAPPDYEL-PWVEKYRPVFLDDVVGNTETIERLKIIAKDGNMPHVIISGMPG 71
Query: 85 TGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQ-SFSFGVKASVK 143
GKT++IL +AR+L G Y + +LELNASD+RGIDVVR +I+ FA + + G K
Sbjct: 72 IGKTTSILCLARQLLGDAYKDAVLELNASDERGIDVVRNRIKGFAQKKVTLPPGRH---K 128
Query: 144 LVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPV 203
+++LDEAD+MT AQ ALRR +E Y+ TRFA CNQ NKII LQSRC R+A L
Sbjct: 129 IIILDEADSMTPGAQQALRRTMEIYSSTTRFAFACNQSNKIIEPLQSRCAILRYARLTDG 188
Query: 204 HVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTG 263
V +RLK V +AE ++ TE GLAALV GDMR+A+N LQST ++ + V+
Sbjct: 189 QVVKRLKQVCDAEKVEHTEDGLAALVFSAEGDMRQAINNLQSTWSGFGFVSGDNVFRVVD 248
Query: 264 NPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPS---DV 320
+P P ++ + + + ++E+ G + DI+ TMF +P+
Sbjct: 249 SPHPVKVQAMIKACWEGKVDAALETLNEL-WTLGYSSHDIIS--TMFRVTKTIPTLSEHS 305
Query: 321 RVRLMNDLADIEYRLSFGCNDKLQLGSIISTFTQ 354
++ + ++ R+ G LQL +S +
Sbjct: 306 KLEFIREIGFTHMRILDGVQSLLQLSGCVSKLCK 339
>gi|4506491|ref|NP_002907.1| replication factor C subunit 4 [Homo sapiens]
gi|31881687|ref|NP_853551.1| replication factor C subunit 4 [Homo sapiens]
gi|1703052|sp|P35249.2|RFC4_HUMAN RecName: Full=Replication factor C subunit 4; AltName:
Full=Activator 1 37 kDa subunit; Short=A1 37 kDa
subunit; AltName: Full=Activator 1 subunit 4; AltName:
Full=Replication factor C 37 kDa subunit; Short=RF-C 37
kDa subunit; Short=RFC37
gi|1498256|gb|AAB09785.1| replication factor C, 37-kDa subunit [Homo sapiens]
gi|16924323|gb|AAH17452.1| Replication factor C (activator 1) 4, 37kDa [Homo sapiens]
gi|18645198|gb|AAH24022.1| Replication factor C (activator 1) 4, 37kDa [Homo sapiens]
gi|22532479|gb|AAM97933.1| replication factor C (activator 1) 4 (37kD) [Homo sapiens]
gi|30582813|gb|AAP35633.1| replication factor C (activator 1) 4, 37kDa [Homo sapiens]
gi|49168606|emb|CAG38798.1| RFC4 [Homo sapiens]
gi|60819475|gb|AAX36501.1| replication factor C 4 [synthetic construct]
gi|61362396|gb|AAX42213.1| replication factor C [synthetic construct]
gi|61362402|gb|AAX42214.1| replication factor C [synthetic construct]
gi|61363130|gb|AAX42340.1| replication factor C 4 [synthetic construct]
gi|119598575|gb|EAW78169.1| replication factor C (activator 1) 4, 37kDa, isoform CRA_a [Homo
sapiens]
gi|119598576|gb|EAW78170.1| replication factor C (activator 1) 4, 37kDa, isoform CRA_a [Homo
sapiens]
gi|123993605|gb|ABM84404.1| replication factor C (activator 1) 4, 37kDa [synthetic construct]
gi|123993735|gb|ABM84469.1| replication factor C (activator 1) 4, 37kDa [synthetic construct]
gi|123994261|gb|ABM84732.1| replication factor C (activator 1) 4, 37kDa [synthetic construct]
gi|123999624|gb|ABM87354.1| replication factor C (activator 1) 4, 37kDa [synthetic construct]
gi|261860114|dbj|BAI46579.1| replication factor C (activator 1) 4, 37kDa [synthetic construct]
Length = 363
Score = 218 bits (554), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 129/333 (38%), Positives = 198/333 (59%), Gaps = 8/333 (2%)
Query: 32 SGTPPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTI 91
SG K PWVEKYRP+ + +VA ++V + + LP+LL YGPPGTGKTSTI
Sbjct: 29 SGENKKAKPVPWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTI 88
Query: 92 LAVARKLYGAQYHNM-ILELNASDDRGIDVVRQQIQDFAS---TQSFSFGVKAS-VKLVL 146
LA AR+L+G + + +LELNASD+RGI VVR+++++FA + S S G K+V+
Sbjct: 89 LAAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPPFKIVI 148
Query: 147 LDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVT 206
LDEAD+MT AQ ALRR +EK +K TRF LICN V++II L SRC++FRF PL
Sbjct: 149 LDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQ 208
Query: 207 ERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTH--MASQQITEEAVYLCTGN 264
+RL + + E + +++ G+A LV++ GD+RKA+ LQS ++ITE+ + G
Sbjct: 209 QRLLDIAKKENVKISDEGIAYLVKVSEGDLRKAITFLQSATRLTGGKEITEKVITDIAGV 268
Query: 265 PLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRL 324
+ I+ + + SF D + + + + +G A +V ++ V + + + +
Sbjct: 269 IPAEKIDGVFAACQSGSF-DKLEAVVKDLIDEGHAATQLVNQLHDVVVENNLSDKQKSII 327
Query: 325 MNDLADIEYRLSFGCNDKLQLGSIISTFTQARS 357
LA+++ L+ G ++ LQL S+ +T Q S
Sbjct: 328 TEKLAEVDKCLADGADEHLQLISLCATVMQQLS 360
>gi|449282866|gb|EMC89612.1| Replication factor C subunit 2, partial [Columba livia]
Length = 316
Score = 218 bits (554), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 117/319 (36%), Positives = 186/319 (58%), Gaps = 3/319 (0%)
Query: 44 VEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQY 103
VEKYRP L ++ + D V ++ E +P++++ GPPGTGKT++IL +AR L G
Sbjct: 1 VEKYRPMKLCEIVGNEDTVSRLEVFAKEGNVPNIIIAGPPGTGKTTSILCLARALLGPAL 60
Query: 104 HNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRR 163
+ +LELNAS+DRGIDVVR +I+ FA Q + K K+++LDEAD+MT AQ ALRR
Sbjct: 61 KDAVLELNASNDRGIDVVRNKIKMFAQ-QKVTLP-KGRHKIIILDEADSMTDGAQQALRR 118
Query: 164 VIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEG 223
+E Y+K TRFAL CN +KII +QSRC R+ L + RL ++E E + T+
Sbjct: 119 TMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDSQILARLLKIVEKEDVPYTDD 178
Query: 224 GLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESFA 283
GL A++ GDMR+ALN LQST+ I E V+ P P ++++ +N +
Sbjct: 179 GLEAIIFTAQGDMRQALNNLQSTYSGFGFINSENVFKVCDEPHPLLVKEMIQHCVNANID 238
Query: 284 DSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDKL 343
+++K ++ + R G A D++ + +MP +++ + ++ +++ G N L
Sbjct: 239 EAYKILAHL-WRLGYAPEDVIGNIFRVCKTFQMPEYLKLEFIKEIGYTHMKIAEGVNSLL 297
Query: 344 QLGSIISTFTQARSAIVAA 362
Q+ +++ Q +A VA+
Sbjct: 298 QMAGLLARLCQKTAAPVAS 316
>gi|10640840|emb|CAC12618.1| probable replication factor C, 40 KD subunit [Thermoplasma
acidophilum]
Length = 330
Score = 218 bits (554), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 112/316 (35%), Positives = 190/316 (60%), Gaps = 6/316 (1%)
Query: 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 102
W EKYRP+SL+++ + + + + +PHLL G GTGKTST +A+A +L+G
Sbjct: 17 WTEKYRPKSLSEIYGEDENIQKLKSFVEKKEIPHLLFAGSVGTGKTSTAIALAIELFGDS 76
Query: 103 YHNMILELNASDDRGIDVVRQQIQDFASTQ-SFSFGVKASVKLVLLDEADAMTKDAQFAL 161
+ ++E+NAS++ GIDV+R +I+D A + S G K ++ LDEAD +T +AQ AL
Sbjct: 77 WKENMVEMNASNENGIDVIRNKIKDIARIKPSNPLGFK----ILFLDEADQLTAEAQAAL 132
Query: 162 RRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVT 221
RR +E Y++ TRF CN +KIIP +QSR RF P+ +++ +L+ + + EG +
Sbjct: 133 RRTMEIYSETTRFIFSCNYSSKIIPPIQSRTVVMRFRPVPDEYISRKLQEIAKNEGFQID 192
Query: 222 EGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNES 281
E + ALV + GDMRKA+N+LQ+ + S +I+ + +Y G P+ I+++ +N
Sbjct: 193 EESMHALVEVSAGDMRKAINVLQAVY-TSGEISPKKIYEIIGYASPEKIQKMISRAINGL 251
Query: 282 FADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCND 341
F ++ + + M + GL+ +DIVR + +V + ++ ++ LAD E+R+ G ND
Sbjct: 252 FDEAREIVDGMLIYDGLSGIDIVRSLHSYVRSSMISPKQKIEIIKALADAEFRIVEGSND 311
Query: 342 KLQLGSIISTFTQARS 357
++QL ++I+ + S
Sbjct: 312 RIQLDALIAKLAEIGS 327
>gi|310790808|gb|EFQ26341.1| replication factor C [Glomerella graminicola M1.001]
Length = 383
Score = 218 bits (554), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 107/222 (48%), Positives = 152/222 (68%), Gaps = 10/222 (4%)
Query: 32 SGTPPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTI 91
S PP +A PWVEKYRP++L+DV A V + R + LPH+L YGPPGTGKTST+
Sbjct: 26 SAQPP--RAQPWVEKYRPKTLSDVTAQDHTVTVLQRTLQASNLPHMLFYGPPGTGKTSTV 83
Query: 92 LAVARKLYGAQY-HNMILELNASDDRGIDVVRQQIQDFASTQ----SFSFGVK---ASVK 143
LA+A++LYG + + +LELNASD+RGI +VR++++DFA Q + + + K
Sbjct: 84 LALAKELYGPEMIKSRVLELNASDERGISIVREKVKDFARMQLTNPTNEYKKRYPCPPFK 143
Query: 144 LVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPV 203
+++LDEAD+MT+DAQ ALRR +E Y+K TRF LICN V +II L SRC++FRF L+
Sbjct: 144 IIILDEADSMTQDAQSALRRTMETYSKITRFCLICNYVTRIIDPLASRCSKFRFKSLDQG 203
Query: 204 HVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQS 245
+ +RL + E EG+ + +G + AL++ GD+RKA+ LQS
Sbjct: 204 NAKKRLGDIAENEGVQLEDGAVDALIKCSEGDLRKAITYLQS 245
>gi|449329297|gb|AGE95570.1| DNA replication factor c subunit [Encephalitozoon cuniculi]
Length = 305
Score = 218 bits (554), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 121/315 (38%), Positives = 189/315 (60%), Gaps = 14/315 (4%)
Query: 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 102
EKYRP SL +V +R++V ++ ++S R+P++L YGPPGTGKT++I A+A L
Sbjct: 5 LTEKYRPGSLLEVVGNREVVSSLQSISSAGRIPNMLFYGPPGTGKTTSIRAIANNLP--- 61
Query: 103 YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALR 162
+LELNASD+RGI VR+ I++FAST S ++KLV+LDEAD M++DAQ ALR
Sbjct: 62 -RTSVLELNASDERGIATVRETIKEFASTYS------KTMKLVILDEADMMSRDAQNALR 114
Query: 163 RVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTE 222
R+IE ++ NTRF LI N + KII + SRCT+FRF P+ R++ + + E + T
Sbjct: 115 RIIEDFSANTRFCLIANHLRKIISPILSRCTKFRFGPIGDTE--NRIEEICKRESIKYTP 172
Query: 223 GGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESF 282
G+ A+ R+ GDMRKA+N +Q + Q+ E V G E++ L +
Sbjct: 173 EGIKAVSRISMGDMRKAVNDIQGISASLGQVDESNVRRFNGIAPSSVYEELFRNLGSMGM 232
Query: 283 ADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDK 342
+ + ++ G+ ++ + V + KM + +++++ +++DIEYR S GC++K
Sbjct: 233 PELRVELERLRYEYGMDCDALLGNLGELVRESKMRN--KMKILKEMSDIEYRKSIGCSEK 290
Query: 343 LQLGSIISTFTQARS 357
+Q +IIS F RS
Sbjct: 291 VQSDAIISIFILNRS 305
>gi|291400267|ref|XP_002716498.1| PREDICTED: replication factor C 4 [Oryctolagus cuniculus]
Length = 364
Score = 218 bits (554), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 130/324 (40%), Positives = 195/324 (60%), Gaps = 9/324 (2%)
Query: 39 KASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKL 98
K PWVEKYRP+ + +VA ++V + + LP+LL YGPPGTGKTSTILA AR+L
Sbjct: 36 KPVPWVEKYRPKCVDEVAFQEEVVSVLKKSLEGADLPNLLFYGPPGTGKTSTILAAAREL 95
Query: 99 YGAQYHNM-ILELNASDDRGIDVVRQQIQDFAS---TQSFSFGVKAS-VKLVLLDEADAM 153
+G + + +LELNASD+RGI VVR+++++FA + S S G K+V+LDEAD+M
Sbjct: 96 FGPELFRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSM 155
Query: 154 TKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVI 213
T AQ ALRR +EK +K TRF LICN V++II L SRC++FRF PL +RL +
Sbjct: 156 TSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIA 215
Query: 214 EAEGLDVTEGGLAALVRLCNGDMRKALNILQSTH--MASQQITEEAVYLCTGNPLPKDIE 271
E E + ++ G+A LV++ GD+RKA+ LQS +++TE + G P+ I
Sbjct: 216 EKENVIISNEGIAYLVKVSEGDLRKAITFLQSATRLTGGKEVTENVITDIAGVIPPETIN 275
Query: 272 QISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMND-LAD 330
I SF D + + + + +G A +V ++ V + SD + ++ + LA+
Sbjct: 276 GIFAACQGGSF-DKLEGVVKDLIDEGHAATQVVNQLHDVVVENDDLSDKQKSIITEKLAE 334
Query: 331 IEYRLSFGCNDKLQLGSIISTFTQ 354
++ L+ G ++ LQL S+ +T Q
Sbjct: 335 VDKCLADGADEHLQLLSLCATVMQ 358
>gi|409082644|gb|EKM83002.1| hypothetical protein AGABI1DRAFT_69120 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 372
Score = 218 bits (554), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 115/275 (41%), Positives = 171/275 (62%), Gaps = 16/275 (5%)
Query: 37 DIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVAR 96
D + PWVEKYRP+++ DV+A V + + + LPH+L YGPPGTGKTSTILA+AR
Sbjct: 21 DTELQPWVEKYRPKTIEDVSAQEHTVAVLRKTLTSTNLPHMLFYGPPGTGKTSTILALAR 80
Query: 97 KLYGA-QYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKAS--------VKLVLL 147
+L+G + N +LELNASD+RGI +VR++I++FA + V + K+++L
Sbjct: 81 QLFGPDNFKNRVLELNASDERGISIVREKIKNFARQTPRAQAVASDGKTYPCPPYKIIIL 140
Query: 148 DEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTE 207
DEAD+MT+DAQ ALRR++E Y + TRF L+CN V +II L SRC++FRF PL+ T
Sbjct: 141 DEADSMTQDAQGALRRIMETYARITRFCLVCNYVTRIIEPLASRCSKFRFTPLDSESATS 200
Query: 208 RLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLP 267
RL ++ + E +DV + AL+ + NGD+R+A+ LQS S T N P
Sbjct: 201 RLTYIAKEEQIDVDTSVIDALITVSNGDLRRAITYLQSASRLSSSSES------TENLRP 254
Query: 268 KDIEQISYWLLNESFADSFKRISEMKMRKGLALVD 302
DI++I+ ++ ++ + F R +++ G VD
Sbjct: 255 YDIQEIA-GVVPDTVINQFARTIGIEIDDGDMNVD 288
>gi|297672721|ref|XP_002814437.1| PREDICTED: replication factor C subunit 4 isoform 1 [Pongo abelii]
gi|297672723|ref|XP_002814438.1| PREDICTED: replication factor C subunit 4 isoform 2 [Pongo abelii]
gi|397470118|ref|XP_003806680.1| PREDICTED: replication factor C subunit 4 isoform 1 [Pan paniscus]
gi|397470120|ref|XP_003806681.1| PREDICTED: replication factor C subunit 4 isoform 2 [Pan paniscus]
gi|426343233|ref|XP_004038219.1| PREDICTED: replication factor C subunit 4 isoform 1 [Gorilla
gorilla gorilla]
gi|426343235|ref|XP_004038220.1| PREDICTED: replication factor C subunit 4 isoform 2 [Gorilla
gorilla gorilla]
gi|410253804|gb|JAA14869.1| replication factor C (activator 1) 4, 37kDa [Pan troglodytes]
Length = 363
Score = 218 bits (554), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 129/333 (38%), Positives = 198/333 (59%), Gaps = 8/333 (2%)
Query: 32 SGTPPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTI 91
SG K PWVEKYRP+ + +VA ++V + + LP+LL YGPPGTGKTSTI
Sbjct: 29 SGENKKAKPVPWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTI 88
Query: 92 LAVARKLYGAQYHNM-ILELNASDDRGIDVVRQQIQDFAS---TQSFSFGVKAS-VKLVL 146
LA AR+L+G + + +LELNASD+RGI VVR+++++FA + S S G K+V+
Sbjct: 89 LAAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPPFKIVI 148
Query: 147 LDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVT 206
LDEAD+MT AQ ALRR +EK +K TRF LICN V++II L SRC++FRF PL
Sbjct: 149 LDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQ 208
Query: 207 ERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTH--MASQQITEEAVYLCTGN 264
+RL + + E + +++ G+A LV++ GD+RKA+ LQS ++ITE+ + G
Sbjct: 209 QRLLDIAKKENVKISDEGIAYLVKVSEGDLRKAITFLQSATRLTGGKEITEKVITDIAGV 268
Query: 265 PLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRL 324
+ I+ + + SF D + + + + +G A +V ++ V + + + +
Sbjct: 269 IPAEKIDGVFAACQSGSF-DKLEAVVKDLIDEGHAATQLVNQLHDVVVENNLSDKQKSII 327
Query: 325 MNDLADIEYRLSFGCNDKLQLGSIISTFTQARS 357
LA+++ L+ G ++ LQL S+ +T Q S
Sbjct: 328 TEKLAEVDKCLADGADEHLQLISLCATVMQQLS 360
>gi|156057403|ref|XP_001594625.1| hypothetical protein SS1G_04432 [Sclerotinia sclerotiorum 1980]
gi|154702218|gb|EDO01957.1| hypothetical protein SS1G_04432 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 412
Score = 218 bits (554), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 109/235 (46%), Positives = 153/235 (65%), Gaps = 18/235 (7%)
Query: 19 NLKPKDNGKNVIVSGTPPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLL 78
N+K K G N + PWVEKYRP+ L DV A + + R + LPH+L
Sbjct: 21 NIKEKPKGNN----------RMQPWVEKYRPKGLGDVTAQDHTITVLQRTLQSSNLPHML 70
Query: 79 LYGPPGTGKTSTILAVARKLYGAQY-HNMILELNASDDRGIDVVRQQIQDFASTQ----S 133
YGPPGTGKTST+LA+A++LYG + + +LELNASD+RGI +VR++++DFA Q S
Sbjct: 71 FYGPPGTGKTSTVLALAKELYGPELIKSRVLELNASDERGISIVREKVKDFARMQLSNPS 130
Query: 134 FSFGVK---ASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQS 190
++ K K+++LDEAD+MT+DAQ ALRR +E Y++ TRF LICN V +II L S
Sbjct: 131 PAYRQKYPCPPYKIIILDEADSMTQDAQSALRRTMETYSRITRFCLICNYVTRIIDPLAS 190
Query: 191 RCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQS 245
RC++FRF L+ + R+K + + EG+ + EG + AL+R GD+RKA+ LQS
Sbjct: 191 RCSKFRFKSLDKGNAVVRVKEIADKEGVKLEEGAVEALIRCSEGDLRKAITYLQS 245
>gi|169854167|ref|XP_001833760.1| replication factor C [Coprinopsis cinerea okayama7#130]
gi|116505157|gb|EAU88052.1| replication factor C [Coprinopsis cinerea okayama7#130]
Length = 380
Score = 218 bits (554), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 108/244 (44%), Positives = 161/244 (65%), Gaps = 18/244 (7%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP+++ +++A + R + LPH+L YGPPGTGKTSTILA+AR+L+G
Sbjct: 30 PWVEKYRPKTINEISAQEHTTSVLSRTLTSANLPHMLFYGPPGTGKTSTILALARELFGP 89
Query: 102 -QYHNMILELNASDDRGIDVVRQQIQDFA-----STQSFSFGVKA----SVKLVLLDEAD 151
+ N +LELNASD+RGI +VR +I++FA + Q+ S K K+++LDEAD
Sbjct: 90 DNFRNRVLELNASDERGISIVRDKIKNFARQTPRAQQAVSSDGKTYPCPPYKIIILDEAD 149
Query: 152 AMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKH 211
+MT+DAQ ALRR++E Y K TRF L+CN V +II L SRC++FRF PL+P + RL +
Sbjct: 150 SMTQDAQGALRRIMETYAKITRFCLVCNYVTRIIEPLASRCSKFRFTPLDPDSASARLSY 209
Query: 212 VIEAEGLDVTEGGLAALVRLCNGDMRKALNILQS-THMASQQITEEAVYLCTGNPLPKDI 270
+ +AE +D+++ + AL+ +GD+R+A+ LQS +A + LP+DI
Sbjct: 210 IAQAENIDISKPVIDALISTSHGDLRRAITYLQSAARLAGSSDPPTPI-------LPRDI 262
Query: 271 EQIS 274
++I+
Sbjct: 263 QEIA 266
>gi|19073950|ref|NP_584556.1| DNA REPLICATION FACTOR C (ACTIVATOR 1) SUBUNIT [Encephalitozoon
cuniculi GB-M1]
gi|19068592|emb|CAD25060.1| DNA REPLICATION FACTOR C (ACTIVATOR 1) SUBUNIT [Encephalitozoon
cuniculi GB-M1]
Length = 305
Score = 217 bits (553), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 121/315 (38%), Positives = 189/315 (60%), Gaps = 14/315 (4%)
Query: 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 102
EKYRP SL +V +R++V ++ ++S R+P++L YGPPGTGKT++I A+A L
Sbjct: 5 LTEKYRPGSLLEVVGNREVVSSLQSISSAGRIPNMLFYGPPGTGKTTSIRAIANNLP--- 61
Query: 103 YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALR 162
+LELNASD+RGI VR+ I++FAST S ++KLV+LDEAD M++DAQ ALR
Sbjct: 62 -RTSVLELNASDERGIATVRETIKEFASTYS------KTMKLVILDEADMMSRDAQNALR 114
Query: 163 RVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTE 222
R+IE ++ NTRF LI N + KII + SRCT+FRF P+ R++ + + E + T
Sbjct: 115 RIIEDFSANTRFCLIANHLRKIISPILSRCTKFRFGPIGDTE--NRIEEICKRESIKYTP 172
Query: 223 GGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESF 282
G+ A+ R+ GDMRKA+N +Q + Q+ E V G E++ L +
Sbjct: 173 EGIKAVSRISMGDMRKAVNDIQGISASLGQVDESNVRRFNGIAPSSVYEELFRNLGSMGM 232
Query: 283 ADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDK 342
+ + ++ + ++ + V + KM + +++++ +++DIEYR S GC++K
Sbjct: 233 PELRVELERLRYEYSMDCDALLGNLGELVRESKMRN--KMKILKEMSDIEYRKSIGCSEK 290
Query: 343 LQLGSIISTFTQARS 357
+QL +IIS F RS
Sbjct: 291 VQLDAIISIFILNRS 305
>gi|30584245|gb|AAP36371.1| Homo sapiens replication factor C (activator 1) 4, 37kDa [synthetic
construct]
gi|54697188|gb|AAV38966.1| replication factor C (activator 1) 4, 37kDa [synthetic construct]
gi|60653953|gb|AAX29669.1| replication factor C 4 [synthetic construct]
gi|60654181|gb|AAX29783.1| replication factor C 4 [synthetic construct]
gi|60830868|gb|AAX36948.1| replication factor C 4 [synthetic construct]
gi|61367088|gb|AAX42950.1| replication factor C 4 [synthetic construct]
Length = 364
Score = 217 bits (553), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 129/333 (38%), Positives = 198/333 (59%), Gaps = 8/333 (2%)
Query: 32 SGTPPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTI 91
SG K PWVEKYRP+ + +VA ++V + + LP+LL YGPPGTGKTSTI
Sbjct: 29 SGENKKAKPVPWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTI 88
Query: 92 LAVARKLYGAQYHNM-ILELNASDDRGIDVVRQQIQDFAS---TQSFSFGVKAS-VKLVL 146
LA AR+L+G + + +LELNASD+RGI VVR+++++FA + S S G K+V+
Sbjct: 89 LAAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPPFKIVI 148
Query: 147 LDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVT 206
LDEAD+MT AQ ALRR +EK +K TRF LICN V++II L SRC++FRF PL
Sbjct: 149 LDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQ 208
Query: 207 ERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTH--MASQQITEEAVYLCTGN 264
+RL + + E + +++ G+A LV++ GD+RKA+ LQS ++ITE+ + G
Sbjct: 209 QRLLDIAKKENVKISDEGIAYLVKVSEGDLRKAITFLQSATRLTGGKEITEKVITDIAGV 268
Query: 265 PLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRL 324
+ I+ + + SF D + + + + +G A +V ++ V + + + +
Sbjct: 269 IPAEKIDGVFAACQSGSF-DKLEAVVKDLIDEGHAATQLVNQLHDVVVENNLSDKQKSII 327
Query: 325 MNDLADIEYRLSFGCNDKLQLGSIISTFTQARS 357
LA+++ L+ G ++ LQL S+ +T Q S
Sbjct: 328 TEKLAEVDKCLADGADEHLQLISLCATVMQQLS 360
>gi|260951433|ref|XP_002620013.1| hypothetical protein CLUG_01172 [Clavispora lusitaniae ATCC 42720]
gi|238847585|gb|EEQ37049.1| hypothetical protein CLUG_01172 [Clavispora lusitaniae ATCC 42720]
Length = 256
Score = 217 bits (553), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 117/255 (45%), Positives = 164/255 (64%), Gaps = 9/255 (3%)
Query: 106 MILELNASDDRGIDVVRQQIQDFAST-QSFSFGVKASVKLVLLDEADAMTKDAQFALRRV 164
M+LELNASDDRGIDVVR +I+DFAST Q FS G K L++LDEADAMT AQ +LRR+
Sbjct: 1 MVLELNASDDRGIDVVRNRIKDFASTMQIFSRGFK----LIILDEADAMTAVAQNSLRRI 56
Query: 165 IEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGG 224
IE+YTKNTRF ++ N +K+ PAL SRCTRFRF P+ + +R+++VI+ E L++T
Sbjct: 57 IERYTKNTRFCILANYSHKLNPALLSRCTRFRFNPISEEAIRDRVQNVIQQEKLNITPEA 116
Query: 225 LAALVRLCNGDMRKALNILQSTHMA----SQQITEEAVYLCTGNPLPKDIEQISYWLLNE 280
+AL+ L GDMR+ALN+LQ+ A Q+ + +Y C G P P+DIE + +L +
Sbjct: 117 ESALLSLSKGDMRRALNVLQACKAALENPEDQVDIDMIYECIGAPHPQDIEAVLDSVLKD 176
Query: 281 SFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCN 340
+ K KGLALVD+V + K + RV+++ L+DIEY +S G N
Sbjct: 177 DWTTCILTFDRYKKSKGLALVDLVSGFVEILSKYDLKPATRVKILKGLSDIEYGISKGGN 236
Query: 341 DKLQLGSIISTFTQA 355
DK+Q ++++ A
Sbjct: 237 DKIQTSAVVAVIKSA 251
>gi|326926086|ref|XP_003209236.1| PREDICTED: replication factor C subunit 4-like [Meleagris
gallopavo]
Length = 362
Score = 217 bits (553), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 132/336 (39%), Positives = 206/336 (61%), Gaps = 19/336 (5%)
Query: 32 SGTPPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTI 91
SG +K PWVEKYRP+++ +VA ++V + + LP+LL YGPPGTGKTSTI
Sbjct: 27 SGEGKRLKPIPWVEKYRPKNVDEVAFQDEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTI 86
Query: 92 LAVARKLYGAQ-YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKAS------VKL 144
LA AR+L+G + + +LELNASD+RGI V+R++++ FA Q + G +A K+
Sbjct: 87 LAAARELFGPELFRQRVLELNASDERGIQVIREKVKAFA--QLTASGSRADGEVCPPFKI 144
Query: 145 VLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVH 204
V+LDEAD+MT AQ ALRR +EK +K TRF LICN +++II L SRC++FRF PL
Sbjct: 145 VILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYISRIIEPLTSRCSKFRFKPLSDKI 204
Query: 205 VTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTH--MASQQITEEAVYLCT 262
+RL V E E + +T ++ LV++ GD+RKA+ LQS M ++ITE+ V
Sbjct: 205 QQQRLLDVSEKENVKITSEAVSYLVKVSEGDLRKAITYLQSATRLMGGKEITEKTVTEIA 264
Query: 263 GNPLPKDIEQISYWLLNESFADSFKRISEMK---MRKGLALVDIVREVTMFVFKIKMPSD 319
G +P+ E I LL+ ++ SF+++ + + +G A+ ++ ++ V + + SD
Sbjct: 265 GV-IPR--ETID-GLLSACWSGSFEKLETVAKNLISEGYAVAQLISQLHDLVVESEDFSD 320
Query: 320 VRVRLM-NDLADIEYRLSFGCNDKLQLGSIISTFTQ 354
+ ++ LA+++ L+ G ++ LQL S+ + Q
Sbjct: 321 KQKSIIVEKLAEVDKCLADGADEYLQLISLCALVMQ 356
>gi|197692437|dbj|BAG70182.1| replication factor C 2 isoform 1 [Homo sapiens]
Length = 354
Score = 217 bits (553), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 119/321 (37%), Positives = 185/321 (57%), Gaps = 3/321 (0%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP L ++ + D V ++ E +P++++ GPPGTGKT++IL +AR L G
Sbjct: 37 PWVEKYRPVKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGP 96
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFAL 161
+ +LELNAS+DRGIDVVR +I+ FA Q + K K+++LDEAD+MT AQ AL
Sbjct: 97 ALKDAMLELNASNDRGIDVVRNKIKMFAQ-QKVTLP-KGRHKIIILDEADSMTDGAQQAL 154
Query: 162 RRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVT 221
RR +E Y+K TRFAL CN +KII +QSRC R+ L + RL +VIE E + T
Sbjct: 155 RRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQILTRLMNVIEKERVPYT 214
Query: 222 EGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNES 281
+ GL A++ GDMR+ALN LQST I E V+ P P ++++ +N +
Sbjct: 215 DDGLEAIIFTAQGDMRQALNNLQSTFSGFGFINSENVFKVCDEPHPLLVKEMIQHCVNAN 274
Query: 282 FADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCND 341
+++K ++ + G + DI+ + +M +++ + ++ +++ G N
Sbjct: 275 IDEAYKILAHL-WHLGYSPEDIIGNIFRVCKTFQMAEYLKLEFIKEIGYTHMKIAEGVNS 333
Query: 342 KLQLGSIISTFTQARSAIVAA 362
LQ+ +++ Q A VA+
Sbjct: 334 LLQMAGLLARLCQKTMAPVAS 354
>gi|345566715|gb|EGX49657.1| hypothetical protein AOL_s00078g146 [Arthrobotrys oligospora ATCC
24927]
Length = 387
Score = 217 bits (553), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 107/212 (50%), Positives = 146/212 (68%), Gaps = 8/212 (3%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP++L+DV A V + R + LPH+L YGPPGTGKTSTILA+A++LYG
Sbjct: 36 PWVEKYRPKTLSDVTAQDHTVSVLRRTLQSSNLPHMLFYGPPGTGKTSTILALAKELYGP 95
Query: 102 Q-YHNMILELNASDDRGIDVVRQQIQDFASTQ-SFSFGVKAS------VKLVLLDEADAM 153
+ +LELNASD+RGI +VR+++++FA S + AS K+++LDEAD+M
Sbjct: 96 ELMKTRVLELNASDERGISIVREKVKNFAKIAVSTTTAANASKYPCPPYKIIILDEADSM 155
Query: 154 TKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVI 213
T DAQ ALRR +E Y+K TRF LICN V +II L SRC++FRF PL+ + RL +
Sbjct: 156 THDAQSALRRTMETYSKITRFCLICNYVTRIIDPLASRCSKFRFKPLDEGNTRLRLSSIA 215
Query: 214 EAEGLDVTEGGLAALVRLCNGDMRKALNILQS 245
EAEG+ EG + L+++ +GD+RKA+ LQS
Sbjct: 216 EAEGVKYQEGVVDTLIKVADGDLRKAITFLQS 247
>gi|114613995|ref|XP_001149874.1| PREDICTED: replication factor C subunit 2 isoform 4 [Pan
troglodytes]
gi|410213960|gb|JAA04199.1| replication factor C (activator 1) 2, 40kDa [Pan troglodytes]
gi|410213962|gb|JAA04200.1| replication factor C (activator 1) 2, 40kDa [Pan troglodytes]
gi|410250164|gb|JAA13049.1| replication factor C (activator 1) 2, 40kDa [Pan troglodytes]
gi|410250166|gb|JAA13050.1| replication factor C (activator 1) 2, 40kDa [Pan troglodytes]
gi|410250168|gb|JAA13051.1| replication factor C (activator 1) 2, 40kDa [Pan troglodytes]
gi|410250170|gb|JAA13052.1| replication factor C (activator 1) 2, 40kDa [Pan troglodytes]
gi|410250172|gb|JAA13053.1| replication factor C (activator 1) 2, 40kDa [Pan troglodytes]
Length = 354
Score = 217 bits (553), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 119/321 (37%), Positives = 185/321 (57%), Gaps = 3/321 (0%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP L ++ + D V ++ E +P++++ GPPGTGKT++IL +AR L G
Sbjct: 37 PWVEKYRPVKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGP 96
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFAL 161
+ +LELNAS+DRGIDVVR +I+ FA Q + K K+++LDEAD+MT AQ AL
Sbjct: 97 ALKDAMLELNASNDRGIDVVRNKIKMFAQ-QKVTLP-KGRHKIIILDEADSMTDGAQQAL 154
Query: 162 RRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVT 221
RR +E Y+K TRFAL CN +KII +QSRC R+ L + RL +VIE E + T
Sbjct: 155 RRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQILTRLMNVIEKERVPYT 214
Query: 222 EGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNES 281
+ GL A++ GDMR+ALN LQST I E V+ P P ++++ +N +
Sbjct: 215 DDGLEAIIFTAQGDMRQALNNLQSTFSGFGFINSENVFKVCDEPHPLLVKEMIQHCVNAN 274
Query: 282 FADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCND 341
+++K ++ + G + DI+ + +M +++ + ++ +++ G N
Sbjct: 275 IDEAYKILAHL-WHLGYSPEDIIGNIFRVCKTFQMAEYLKLEFIKEIGYTHMKIAEGVNS 333
Query: 342 KLQLGSIISTFTQARSAIVAA 362
LQ+ +++ Q A VA+
Sbjct: 334 LLQMAGLLARLCQKTMAPVAS 354
>gi|255712733|ref|XP_002552649.1| KLTH0C09900p [Lachancea thermotolerans]
gi|238934028|emb|CAR22211.1| KLTH0C09900p [Lachancea thermotolerans CBS 6340]
Length = 322
Score = 217 bits (553), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 128/320 (40%), Positives = 183/320 (57%), Gaps = 13/320 (4%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP L D+ + + + + ++ + +PHL++ G PG GKT+++ +A +L G
Sbjct: 11 PWVEKYRPHLLKDIVGNEETITRLQQIAQDGNMPHLIISGLPGIGKTTSVSCLAHELLGN 70
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQ-SFSFGVKASVKLVLLDEADAMTKDAQFA 160
Y +LELNASDDRGIDVVR QI+ FA + S G K+V+LDEAD+MT AQ A
Sbjct: 71 AYSQAVLELNASDDRGIDVVRNQIKQFAQKKCSLPPGRH---KIVILDEADSMTAGAQQA 127
Query: 161 LRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDV 220
LRR +E Y+ TRFA CNQ NKII LQSRC R++ L+ V RL VI+AE +
Sbjct: 128 LRRTMEIYSNTTRFAFACNQSNKIIEPLQSRCAILRYSKLQDDQVLRRLLEVIQAENVQY 187
Query: 221 TEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNE 280
T GL A++ GDMR+ALN LQST + E V+ +P P ++++ LL
Sbjct: 188 TNDGLEAIIFTAEGDMRQALNNLQSTVAGYGLVNGENVFKIVDSPHPLIVKRM---LLAP 244
Query: 281 SFADSFKRISEMKMRKGLALVDIVR---EVTMFVFKIKMPSDVRVRLMNDLADIEYRLSF 337
S +S E+ KG + VDIV VT + +IK VR+ ++ ++ R+
Sbjct: 245 SLDESLALFKEL-WNKGYSAVDIVTTCFRVTKNLDEIK--EAVRLEMIREIGFAHMRILE 301
Query: 338 GCNDKLQLGSIISTFTQARS 357
G LQL +++ ++ R
Sbjct: 302 GVGTYLQLAGMLAKISKVRG 321
>gi|71000134|ref|XP_754784.1| DNA replication factor C subunit Rfc2 [Aspergillus fumigatus Af293]
gi|66852421|gb|EAL92746.1| DNA replication factor C subunit Rfc2, putative [Aspergillus
fumigatus Af293]
gi|159127792|gb|EDP52907.1| DNA replication factor C subunit Rfc2, putative [Aspergillus
fumigatus A1163]
Length = 394
Score = 217 bits (553), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 108/224 (48%), Positives = 148/224 (66%), Gaps = 11/224 (4%)
Query: 33 GTPPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTIL 92
G + PWVEKYRP++L DVAA + R + LPH+L YGPPGTGKTSTIL
Sbjct: 31 GKEEQTRLQPWVEKYRPKTLDDVAAQDHTTKVLQRTLQASNLPHMLFYGPPGTGKTSTIL 90
Query: 93 AVARKLYG-AQYHNMILELNASDDRGIDVVRQQIQDFASTQ-SFSFGVKAS--------- 141
A+A+ L+G A Y + ILELNASD+RGI +VR++++ FA TQ S G+ +S
Sbjct: 91 ALAKSLFGPALYRSRILELNASDERGIGIVREKVKGFARTQLSQPTGLDSSYFEQYPCPP 150
Query: 142 VKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLE 201
K+++LDEAD+MT+DAQ ALRR +E+Y++ TRF L+CN V +II L SRC++FRF PL+
Sbjct: 151 FKIIILDEADSMTQDAQSALRRTMEQYSRITRFCLVCNYVTRIIEPLASRCSKFRFKPLD 210
Query: 202 PVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQS 245
ERL H+ E L + EG + L+ GD+R+A+ +QS
Sbjct: 211 NSAAAERLAHIARLENLKLDEGVIDKLISCSEGDLRRAITYMQS 254
>gi|31563534|ref|NP_852136.1| replication factor C subunit 2 isoform 1 [Homo sapiens]
gi|2507300|sp|P35250.3|RFC2_HUMAN RecName: Full=Replication factor C subunit 2; AltName:
Full=Activator 1 40 kDa subunit; Short=A1 40 kDa
subunit; AltName: Full=Activator 1 subunit 2; AltName:
Full=Replication factor C 40 kDa subunit; Short=RF-C 40
kDa subunit; Short=RFC40
gi|1590811|gb|AAB09786.1| replication factor C, 40-kDa subunit [Homo sapiens]
gi|2914760|gb|AAC04860.1| replication factor C subunit 2 [Homo sapiens]
gi|30172692|gb|AAP22334.1| unknown [Homo sapiens]
gi|119590013|gb|EAW69607.1| replication factor C (activator 1) 2, 40kDa, isoform CRA_b [Homo
sapiens]
gi|119590014|gb|EAW69608.1| replication factor C (activator 1) 2, 40kDa, isoform CRA_b [Homo
sapiens]
gi|197692187|dbj|BAG70057.1| replication factor C 2 isoform 1 [Homo sapiens]
gi|208967280|dbj|BAG73654.1| replication factor C (activator 1) 2 [synthetic construct]
Length = 354
Score = 217 bits (553), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 119/321 (37%), Positives = 185/321 (57%), Gaps = 3/321 (0%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP L ++ + D V ++ E +P++++ GPPGTGKT++IL +AR L G
Sbjct: 37 PWVEKYRPVKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGP 96
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFAL 161
+ +LELNAS+DRGIDVVR +I+ FA Q + K K+++LDEAD+MT AQ AL
Sbjct: 97 ALKDAMLELNASNDRGIDVVRNKIKMFAQ-QKVTLP-KGRHKIIILDEADSMTDGAQQAL 154
Query: 162 RRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVT 221
RR +E Y+K TRFAL CN +KII +QSRC R+ L + RL +VIE E + T
Sbjct: 155 RRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQILTRLMNVIEKERVPYT 214
Query: 222 EGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNES 281
+ GL A++ GDMR+ALN LQST I E V+ P P ++++ +N +
Sbjct: 215 DDGLEAIIFTAQGDMRQALNNLQSTFSGFGFINSENVFKVCDEPHPLLVKEMIQHCVNAN 274
Query: 282 FADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCND 341
+++K ++ + G + DI+ + +M +++ + ++ +++ G N
Sbjct: 275 IDEAYKILAHL-WHLGYSPEDIIGNIFRVCKTFQMAEYLKLEFIKEIGYTHMKIAEGVNS 333
Query: 342 KLQLGSIISTFTQARSAIVAA 362
LQ+ +++ Q A VA+
Sbjct: 334 LLQMAGLLARLCQKTMAPVAS 354
>gi|389749254|gb|EIM90431.1| P-loop containing nucleoside triphosphate hydrolase protein
[Stereum hirsutum FP-91666 SS1]
Length = 379
Score = 217 bits (552), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 111/248 (44%), Positives = 162/248 (65%), Gaps = 17/248 (6%)
Query: 37 DIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVAR 96
D PWVEKYRP+++ DV+A IV +++ + LPH+L YGPPGTGKTSTILA++R
Sbjct: 21 DTNLQPWVEKYRPKTIEDVSAQEHIVAVLEKTLTSTNLPHMLFYGPPGTGKTSTILALSR 80
Query: 97 KLYGA-QYHNMILELNASDDRGIDVVRQQIQDFAS----TQSFSFGVKA----SVKLVLL 147
+L+G + + +LELNASD+RGI +VR++I++FA Q+ S KA K+++L
Sbjct: 81 QLFGPDNFRSRVLELNASDERGIAIVREKIKNFARQTPRAQAVSSDGKAYPCPPYKIIIL 140
Query: 148 DEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTE 207
DEAD+MT+DAQ ALRR++E Y TRF L+CN V +II L SRC++FRF PL+ T
Sbjct: 141 DEADSMTQDAQAALRRIMETYAHITRFCLVCNYVTRIIEPLASRCSKFRFKPLDDSSSTN 200
Query: 208 RLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQS-THMASQQITEEAVYLCTGNPL 266
RL+H+ +E L V +AL+ GD+R+A+ LQS +++ TE +
Sbjct: 201 RLEHIALSEQLRVKPDVFSALISTSGGDLRRAITYLQSAARLSAASETETTIS------- 253
Query: 267 PKDIEQIS 274
P+DI++I+
Sbjct: 254 PRDIQEIA 261
>gi|426217726|ref|XP_004003103.1| PREDICTED: replication factor C subunit 4 isoform 1 [Ovis aries]
Length = 364
Score = 217 bits (552), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 130/331 (39%), Positives = 199/331 (60%), Gaps = 9/331 (2%)
Query: 32 SGTPPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTI 91
SG K PWVEKYRP+ + +VA ++V + + LP+LL YGPPGTGKTSTI
Sbjct: 29 SGENKKAKPVPWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTI 88
Query: 92 LAVARKLYGAQYHNM-ILELNASDDRGIDVVRQQIQDFAS---TQSFSFGVKAS-VKLVL 146
LA AR+L+G + + +LELNASD+RGI VVR+++++FA + S S G K+V+
Sbjct: 89 LAAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPPFKIVI 148
Query: 147 LDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVT 206
LDEAD+MT AQ ALRR +EK +K TRF LICN V++II L SRC++FRF PL
Sbjct: 149 LDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQ 208
Query: 207 ERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTH--MASQQITEEAVYLCTGN 264
+RL + + E + ++ G+A LV++ GD+RKA+ LQS +++TE+ + G
Sbjct: 209 QRLLDIADKEHVKISNEGIAYLVKVSEGDLRKAITFLQSATRLTGGKEVTEKVITDIAGV 268
Query: 265 PLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRL 324
K I+ + + SF D + + + + +G A +V ++ V + SD + +
Sbjct: 269 VPAKTIDGVFAACQSGSF-DKLEAVVKDLINEGHAATQLVNQLHDVVVENDNLSDKQKSI 327
Query: 325 MND-LADIEYRLSFGCNDKLQLGSIISTFTQ 354
+ + LA+++ L+ G ++ LQL S+ +T Q
Sbjct: 328 ITEKLAEVDKCLADGADEHLQLISLCATVMQ 358
>gi|57529590|ref|NP_001006550.1| replication factor C subunit 4 [Gallus gallus]
gi|53136906|emb|CAG32782.1| hypothetical protein RCJMB04_37a17 [Gallus gallus]
Length = 359
Score = 217 bits (552), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 133/336 (39%), Positives = 206/336 (61%), Gaps = 19/336 (5%)
Query: 32 SGTPPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTI 91
SG +K PWVEKYRP+++ +VA ++V + + LP+LL YGPPGTGKTSTI
Sbjct: 27 SGEGNKLKPVPWVEKYRPKNVDEVAFQDEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTI 86
Query: 92 LAVARKLYGAQ-YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKAS------VKL 144
LA AR+L+G + + +LELNASD+RGI V+R++++ FA Q + G +A K+
Sbjct: 87 LAAARELFGPELFRQRVLELNASDERGIQVIREKVKAFA--QLTASGSRADGKVCPPFKI 144
Query: 145 VLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVH 204
V+LDEAD+MT AQ ALRR +EK +K TRF LICN +++II L SRC++FRF PL
Sbjct: 145 VILDEADSMTSAAQGALRRTMEKESKTTRFCLICNYISRIIEPLTSRCSKFRFKPLSDKI 204
Query: 205 VTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTH--MASQQITEEAVYLCT 262
+RL V E E + +T ++ LV++ +GD+RKA+ LQS M ++ITE+ V
Sbjct: 205 QQQRLLDVSEKENVKITSEAVSYLVKVSDGDLRKAITYLQSATRLMGGKEITEKTVTEIA 264
Query: 263 GNPLPKDIEQISYWLLNESFADSFKRISEMK---MRKGLALVDIVREVTMFVFKIKMPSD 319
G +P+ E I LL+ + SF+++ + + +G A+ +V ++ V + + SD
Sbjct: 265 GV-IPR--ETID-GLLSACSSGSFEKLETVAKNLINEGYAVAQLVNQLHDIVVESEDFSD 320
Query: 320 VRVRLM-NDLADIEYRLSFGCNDKLQLGSIISTFTQ 354
+ ++ LA+++ L+ G ++ LQL S+ + Q
Sbjct: 321 KQKSIIVEKLAEVDKCLADGADEYLQLISLCALVMQ 356
>gi|254578476|ref|XP_002495224.1| ZYRO0B06248p [Zygosaccharomyces rouxii]
gi|238938114|emb|CAR26291.1| ZYRO0B06248p [Zygosaccharomyces rouxii]
Length = 321
Score = 217 bits (552), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 124/325 (38%), Positives = 183/325 (56%), Gaps = 10/325 (3%)
Query: 35 PPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAV 94
PP PWVEKYRP+ L+D + + + + ++ + +PHL++ G PG GKT++I +
Sbjct: 4 PPLTLELPWVEKYRPKQLSDTVGNEETIHRLQQIAKDGNMPHLIISGLPGIGKTTSIHCL 63
Query: 95 ARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMT 154
A +L G Y +LELNASDDRGIDVVR QI+ FA + K K+++LDEAD+MT
Sbjct: 64 AHELLGDSYSQGVLELNASDDRGIDVVRNQIKQFAQKKCHLEPGKH--KIIILDEADSMT 121
Query: 155 KDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIE 214
AQ ALRR +E Y+ TRFA CNQ NKII LQSRC R++ L V +RL +I+
Sbjct: 122 AGAQQALRRTMELYSNTTRFAFACNQSNKIIEPLQSRCAILRYSKLSDEQVLKRLLEIIK 181
Query: 215 AEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQIS 274
AE + T GL AL+ GDMR+A+N LQST ++ E V+ +P P ++++
Sbjct: 182 AENVQYTNDGLEALIFTAEGDMRQAVNNLQSTVAGHSLVSGENVFKIVDSPHPLVVKKM- 240
Query: 275 YWLLNESFADSFKRISEMKMRKGLALVDIVR---EVTMFVFKIKMPSDVRVRLMNDLADI 331
LL + +S KG + VDIV VT ++++K R+ ++ ++
Sbjct: 241 --LLAPTLDESIALFKNELWDKGYSSVDIVTTCFRVTKTLYQLKEAK--RLEMIKEIGIA 296
Query: 332 EYRLSFGCNDKLQLGSIISTFTQAR 356
R+ G LQL +++ Q +
Sbjct: 297 HMRILEGVGTYLQLACLLAKIHQLK 321
>gi|332215081|ref|XP_003256668.1| PREDICTED: replication factor C subunit 4 isoform 1 [Nomascus
leucogenys]
Length = 363
Score = 217 bits (552), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 129/333 (38%), Positives = 198/333 (59%), Gaps = 8/333 (2%)
Query: 32 SGTPPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTI 91
SG K PWVEKYRP+ + +VA ++V + + LP+LL YGPPGTGKTSTI
Sbjct: 29 SGENRKAKPVPWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTI 88
Query: 92 LAVARKLYGAQYHNM-ILELNASDDRGIDVVRQQIQDFAS---TQSFSFGVKAS-VKLVL 146
LA AR+L+G + + +LELNASD+RGI VVR+++++FA + S S G K+V+
Sbjct: 89 LAAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPPFKIVI 148
Query: 147 LDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVT 206
LDEAD+MT AQ ALRR +EK +K TRF LICN V++II L SRC++FRF PL
Sbjct: 149 LDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQ 208
Query: 207 ERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTH--MASQQITEEAVYLCTGN 264
+RL + + E + +++ G+A LV++ GD+RKA+ LQS ++ITE+ + G
Sbjct: 209 QRLLDIAKKENVKISDEGIAYLVKVSEGDLRKAITFLQSATRLTGGKEITEKVITDIAGV 268
Query: 265 PLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRL 324
+ I+ + + SF D + + + + +G A +V ++ V + + + +
Sbjct: 269 IPAEKIDGVFAACQSGSF-DKLEAVVKDLIDEGHAATQLVNQLHDVVVENNLSDKQKSII 327
Query: 325 MNDLADIEYRLSFGCNDKLQLGSIISTFTQARS 357
LA+++ L+ G ++ LQL S+ +T Q S
Sbjct: 328 TEKLAEVDKCLADGADEHLQLISLCATVMQQLS 360
>gi|344282143|ref|XP_003412834.1| PREDICTED: replication factor C subunit 4 [Loxodonta africana]
Length = 373
Score = 217 bits (552), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 131/331 (39%), Positives = 197/331 (59%), Gaps = 9/331 (2%)
Query: 32 SGTPPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTI 91
SG K PWVEKYRP+ + +VA ++V + + LP+LL YGPPGTGKTSTI
Sbjct: 29 SGENKKAKPVPWVEKYRPKRVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTI 88
Query: 92 LAVARKLYGAQ-YHNMILELNASDDRGIDVVRQQIQDFAS---TQSFSFGVKAS-VKLVL 146
LA AR+L+G + + + +LELNASD+RGI VVR++++ FA + S S G K+V+
Sbjct: 89 LAAARELFGPELFRSRVLELNASDERGIQVVREKVKSFAQLTVSGSRSDGKPCPPFKIVI 148
Query: 147 LDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVT 206
LDEAD+MT AQ ALRR +EK +K TRF LICN V++II L SRC++FRF PL
Sbjct: 149 LDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKTQQ 208
Query: 207 ERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTH--MASQQITEEAVYLCTGN 264
+RL + E E + +T G+A L+ + GD+RKA+ LQS A +++TE+ + G
Sbjct: 209 QRLLDIAEKENVKITNEGIAYLINVSEGDLRKAITFLQSATRLTAGKEVTEKVIMDIAGV 268
Query: 265 PLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRL 324
+ I+ I + SF D + + + + +G +V + V + SD + +
Sbjct: 269 IPAETIDGIFAVCQSGSF-DKLEAVVKDLIDEGHPATQLVNQFHDVVVENHHLSDKQKSV 327
Query: 325 MND-LADIEYRLSFGCNDKLQLGSIISTFTQ 354
+ + LA+++ L+ G ++ LQL S+ +T Q
Sbjct: 328 ITEKLAEVDQCLADGADEHLQLISLCATVMQ 358
>gi|55926133|ref|NP_446238.1| replication factor C subunit 2 [Rattus norvegicus]
gi|81884071|sp|Q641W4.1|RFC2_RAT RecName: Full=Replication factor C subunit 2; AltName:
Full=Activator 1 subunit C2
gi|51980598|gb|AAH82110.1| Replication factor C (activator 1) 2 [Rattus norvegicus]
gi|149063102|gb|EDM13425.1| replication factor C (activator 1) 2, isoform CRA_b [Rattus
norvegicus]
Length = 349
Score = 217 bits (552), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 118/321 (36%), Positives = 184/321 (57%), Gaps = 3/321 (0%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP L ++ + D V ++ E +P++++ GPPGTGKT++IL +AR L G
Sbjct: 32 PWVEKYRPVKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGP 91
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFAL 161
+ +LELNAS+DRGIDVVR +I+ FA Q + K K+++LDEAD+MT AQ AL
Sbjct: 92 ALKDAVLELNASNDRGIDVVRNKIKMFAQ-QKVTLP-KGRHKIIILDEADSMTDGAQQAL 149
Query: 162 RRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVT 221
RR +E Y+K TRFAL CN +KII +QSRC R+ L V RL +VIE E + T
Sbjct: 150 RRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQVLSRLMNVIEKEKVPYT 209
Query: 222 EGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNES 281
+ GL A++ GDMR+ALN LQST I E V+ P P ++++ ++ +
Sbjct: 210 DDGLEAIIFTAQGDMRQALNNLQSTFSGFGYINSENVFKVCDEPHPLLVKEMIQHCVDAN 269
Query: 282 FADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCND 341
+++K ++ + G + D++ + M +++ + ++ +++ G N
Sbjct: 270 IDEAYKILAHL-WHLGYSPEDVIGNIFRVCKTFPMAEYLKLEFIKEIGYTHMKVAEGVNS 328
Query: 342 KLQLGSIISTFTQARSAIVAA 362
LQ+ +++ Q A VA+
Sbjct: 329 LLQMAGLLARLCQKTMAPVAS 349
>gi|124249278|ref|NP_001074372.1| replication factor C subunit 2 [Bos taurus]
gi|122131746|sp|Q05B83.1|RFC2_BOVIN RecName: Full=Replication factor C subunit 2; AltName:
Full=Activator 1 subunit 2
gi|115545402|gb|AAI22636.1| Replication factor C (activator 1) 2, 40kDa [Bos taurus]
gi|296472929|tpg|DAA15044.1| TPA: replication factor C subunit 2 [Bos taurus]
Length = 352
Score = 216 bits (551), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 118/321 (36%), Positives = 185/321 (57%), Gaps = 3/321 (0%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP L ++ + D V ++ E +P++++ GPPGTGKT++IL +AR L G
Sbjct: 35 PWVEKYRPVKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGP 94
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFAL 161
+ +LELNAS+DRGIDVVR +I+ FA Q + K K+++LDEAD+MT AQ AL
Sbjct: 95 ALKDAVLELNASNDRGIDVVRNKIKMFAQ-QKVTL-PKGRHKIIILDEADSMTDGAQQAL 152
Query: 162 RRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVT 221
RR +E Y+K TRFAL CN +KII +QSRC R+ L + + RL VIE E + T
Sbjct: 153 RRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDMQILARLLSVIEKEKVQYT 212
Query: 222 EGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNES 281
+ GL A++ GDMR+ALN LQST+ I E V+ P P ++++ ++
Sbjct: 213 DDGLEAIIFTAQGDMRQALNNLQSTYSGFGFINSENVFKVCDEPHPLLVKEMIQHCVSAD 272
Query: 282 FADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCND 341
+++K ++ + G + DI+ + +M +++ + ++ +++ G N
Sbjct: 273 IDEAYKILAHL-WHLGYSPEDIIGNIFRVCKTFQMAEYLKLEFIKEIGYTHMKIAEGVNS 331
Query: 342 KLQLGSIISTFTQARSAIVAA 362
LQ+ +++ Q A VA+
Sbjct: 332 LLQMAGLLARLCQKTMAPVAS 352
>gi|116207062|ref|XP_001229340.1| hypothetical protein CHGG_02824 [Chaetomium globosum CBS 148.51]
gi|88183421|gb|EAQ90889.1| hypothetical protein CHGG_02824 [Chaetomium globosum CBS 148.51]
Length = 382
Score = 216 bits (551), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 104/215 (48%), Positives = 149/215 (69%), Gaps = 8/215 (3%)
Query: 39 KASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKL 98
+ PWVEKYRP++L+DV A + ++R + LPH+L YGPPGTGKTSTILA+A++L
Sbjct: 32 RVQPWVEKYRPKTLSDVTAQDHTITVLERTLQASNLPHMLFYGPPGTGKTSTILALAKEL 91
Query: 99 YGAQ-YHNMILELNASDDRGIDVVRQQIQDFASTQ--SFSFGVKA-----SVKLVLLDEA 150
YG + + +LELNASD+RGI +VR++++DFA TQ + G K K+++LDEA
Sbjct: 92 YGPELMKSRVLELNASDERGISIVREKVKDFARTQLTNPPAGYKTRYPCPPFKIIILDEA 151
Query: 151 DAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLK 210
D+MT+DAQ ALRR +E Y+K TRF LICN V +II L SRC++FRF L+ + RL+
Sbjct: 152 DSMTQDAQSALRRTMETYSKITRFCLICNYVTRIIDPLASRCSKFRFKSLDQGNARRRLE 211
Query: 211 HVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQS 245
+ EG+ + + + AL++ +GD+RKA+ LQS
Sbjct: 212 EIARLEGVPIEDAAVDALIKCSDGDLRKAITFLQS 246
>gi|301769425|ref|XP_002920130.1| PREDICTED: replication factor C subunit 2-like isoform 1
[Ailuropoda melanoleuca]
Length = 352
Score = 216 bits (551), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 118/321 (36%), Positives = 185/321 (57%), Gaps = 3/321 (0%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP L ++ + D V ++ E +P++++ GPPGTGKT++IL +AR L G
Sbjct: 35 PWVEKYRPVKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGP 94
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFAL 161
+ + +LELNAS+DRGIDVVR +I+ FA Q + K K+++LDEAD+MT AQ AL
Sbjct: 95 AFKDAVLELNASNDRGIDVVRNKIKMFAQ-QKVTL-PKGRHKIIILDEADSMTDGAQQAL 152
Query: 162 RRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVT 221
RR +E Y+K TRFAL CN +KII +QSRC R+ L V RL V+E E + T
Sbjct: 153 RRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLSDAQVLARLLTVLEQEKVPYT 212
Query: 222 EGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNES 281
+ GL A++ GDMR+ALN +QST I E V+ P P ++++ +N +
Sbjct: 213 DDGLEAVIFTAQGDMRQALNNVQSTFSGFGFINSENVFKVCDEPHPLLVKEMVQHCVNAN 272
Query: 282 FADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCND 341
+++K ++ + G + DI+ + +M +++ + ++ +++ G N
Sbjct: 273 VDEAYKILAHL-WHLGYSPEDIIGNIFRVCKTFQMAEYLKLEFIKEIGYTHMKIAEGVNS 331
Query: 342 KLQLGSIISTFTQARSAIVAA 362
LQ+ +++ Q A VA+
Sbjct: 332 LLQMAGLLARLCQKTMAPVAS 352
>gi|300123151|emb|CBK24424.2| unnamed protein product [Blastocystis hominis]
Length = 314
Score = 216 bits (551), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 117/313 (37%), Positives = 181/313 (57%), Gaps = 3/313 (0%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PW+EK+RPQ L D+ + + + + +T LPH+LL GPPGTGKT+++L +A + G
Sbjct: 4 PWIEKHRPQCLEDIVGNEETIKRMKVITETGNLPHILLAGPPGTGKTTSMLCLAHAMLGD 63
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFAL 161
Y ++ELNASDDRGIDVVR++I+ FA QS + S KLVLLDEAD+MT AQ AL
Sbjct: 64 AYKTAVIELNASDDRGIDVVREKIKLFA--QSKVSLPEGSHKLVLLDEADSMTPAAQQAL 121
Query: 162 RRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVT 221
RR++E Y+ TRFAL+CN +KII +QSRC RF L+ + +RL H+ E E + T
Sbjct: 122 RRIMELYSSTTRFALVCNISSKIIEPIQSRCAILRFNRLKDTEILDRLLHICEEEKITYT 181
Query: 222 EGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNES 281
GL+AL+ +GD+R A+N LQ+T + EE V P P +QI +++
Sbjct: 182 NDGLSALLFCADGDLRVAVNSLQATFYGFNVVNEENVIKVCDQPPPVVAKQIVQCCVSKD 241
Query: 282 FADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCND 341
+ ++++ G + DIV + + +++ + ++ + R++ G
Sbjct: 242 MVGARSGMTQL-WNLGYSSSDIVGTIFKVTKDADLTEKLKLEFLKEIGICQLRIAEGATT 300
Query: 342 KLQLGSIISTFTQ 354
LQL +++ +
Sbjct: 301 LLQLLGLVAKMCE 313
>gi|392567387|gb|EIW60562.1| replication factor C [Trametes versicolor FP-101664 SS1]
Length = 379
Score = 216 bits (551), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 103/218 (47%), Positives = 147/218 (67%), Gaps = 9/218 (4%)
Query: 37 DIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVAR 96
D + PWVEKYRP+++ DV+A V + + + LPH+L YGPPGTGKTSTILA+AR
Sbjct: 20 DTQHQPWVEKYRPKTIEDVSAQEHTVAVLRKTLTSTNLPHMLFYGPPGTGKTSTILALAR 79
Query: 97 KLYGAQ-YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKA--------SVKLVLL 147
+L+G + + + +LELNASD+RGI +VR++I++FA + V A K+++L
Sbjct: 80 QLFGPENFRSRVLELNASDERGISIVREKIKNFARQTPRAQAVSADGTVYPCPPYKIIIL 139
Query: 148 DEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTE 207
DEAD+MT+DAQ ALRR++E Y + TRF L+CN V +II L SRC++FRF PL+P +
Sbjct: 140 DEADSMTQDAQAALRRIMELYARITRFCLVCNYVTRIIEPLASRCSKFRFKPLDPASTSA 199
Query: 208 RLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQS 245
R+ V AE + VT + AL+ GD+R+A+ LQS
Sbjct: 200 RIAQVASAENVPVTPETVDALISTSQGDLRRAITYLQS 237
>gi|379003246|ref|YP_005258918.1| DNA polymerase III subunit gamma and tau [Pyrobaculum oguniense
TE7]
gi|375158699|gb|AFA38311.1| DNA polymerase III, gamma/tau subunits [Pyrobaculum oguniense TE7]
Length = 322
Score = 216 bits (551), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 115/307 (37%), Positives = 178/307 (57%), Gaps = 11/307 (3%)
Query: 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 102
W EKYRP+S +V ++ + +PHLL YGPPGTGKT+ L +AR+LYG
Sbjct: 6 WFEKYRPRSFDEVVDLEEVKARLREFVRSGNMPHLLFYGPPGTGKTTMALVLARELYGEY 65
Query: 103 YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALR 162
+ LELNASD+RGI+V+R+++++FA T KA KLV+LDEAD MT DAQ ALR
Sbjct: 66 WRENTLELNASDERGINVIRERVKEFARTAPVG---KAPFKLVILDEADNMTSDAQQALR 122
Query: 163 RVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTE 222
R++E Y +NTRF L+ N ++ II +QSR RF+PL V RL+++ + EG+ +T+
Sbjct: 123 RIMEMYAQNTRFILLANYISGIIEPIQSRTVMIRFSPLPKEAVFARLRYIADNEGVKITD 182
Query: 223 GGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESF 282
L A+ GDMR+A+N LQ ++ITEE V G P+ + + LN++F
Sbjct: 183 DALEAIYEFTQGDMRRAINALQIAATTGKEITEETVAKALGMVSPRLLRET----LNDAF 238
Query: 283 ADSFKR----ISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFG 338
+F + I + G+ ++IV+++ K+ +P ++ + +A+ Y + G
Sbjct: 239 RGNFGKAATQIYGFVVDGGIGELEIVKQLHREALKLDVPEYLKPEIAYIIAEAHYAILRG 298
Query: 339 CNDKLQL 345
+ Q+
Sbjct: 299 AHGLTQI 305
>gi|351709587|gb|EHB12506.1| Replication factor C subunit 4 [Heterocephalus glaber]
Length = 364
Score = 216 bits (551), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 132/345 (38%), Positives = 201/345 (58%), Gaps = 11/345 (3%)
Query: 20 LKPKDNGKNVIV--SGTPPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHL 77
L KD G SG +K PWVEKYRP+ + +VA ++V + + LP+L
Sbjct: 15 LSTKDQGITATAGSSGENKKVKPVPWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNL 74
Query: 78 LLYGPPGTGKTSTILAVARKLYGAQ-YHNMILELNASDDRGIDVVRQQIQDFAS---TQS 133
L YGPPGTGKTSTILA AR+L+G + + + +LELNASD+RGI VVR+++++FA + S
Sbjct: 75 LFYGPPGTGKTSTILAAARELFGPELFRSRVLELNASDERGIQVVREKVKNFAQLAVSGS 134
Query: 134 FSFGVKAS-VKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRC 192
S G K+V+LDEAD+MT AQ ALRR +EK +K TRF LICN V +II L SRC
Sbjct: 135 RSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVTRIIEPLTSRC 194
Query: 193 TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTH--MAS 250
++FRF PL +RL + E E + ++ G+A LV++ GD+RKA+ LQS
Sbjct: 195 SKFRFKPLSDKIQQQRLLDIAEKENVKISNEGIAYLVKVSEGDLRKAITFLQSATRLTGG 254
Query: 251 QQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMF 310
+++ E+ + G + I+ + + SF D + + + + +G A ++ +V
Sbjct: 255 KEVMEKVITDIAGVIPAETIDGVFAACQSGSF-DKLEAVVKNLINEGHAATQLINQVHDA 313
Query: 311 VFKIKMPSDVRVRLMND-LADIEYRLSFGCNDKLQLGSIISTFTQ 354
+ + SD + +M + LA+ + L+ G ++ LQL S+ + Q
Sbjct: 314 IVENDNLSDKQKSIMTEKLAEADKCLADGADEHLQLISLCAIVMQ 358
>gi|50513622|pdb|1SXJ|B Chain B, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 323
Score = 216 bits (551), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 120/312 (38%), Positives = 186/312 (59%), Gaps = 10/312 (3%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRPQ L+D+ +++ +D + ++ + +PH+++ G PG GKT+++ +A +L G
Sbjct: 10 PWVEKYRPQVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLGR 69
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFAL 161
Y + +LELNASDDRGIDVVR QI+ FA + K K+V+LDEAD+MT AQ AL
Sbjct: 70 SYADGVLELNASDDRGIDVVRNQIKHFAQKKLHLPPGKH--KIVILDEADSMTAGAQQAL 127
Query: 162 RRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVT 221
RR +E Y+ +TRFA CNQ NKII LQS+C R++ L V +RL +I+ E + T
Sbjct: 128 RRTMELYSNSTRFAFACNQSNKIIEPLQSQCAILRYSKLSDEDVLKRLLQIIKLEDVKYT 187
Query: 222 EGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNES 281
GL A++ GDMR+A+N LQST + + V+ +P P ++++ LL +
Sbjct: 188 NDGLEAIIFTAEGDMRQAINNLQSTVAGHGLVNADNVFKIVDSPHPLIVKKM---LLASN 244
Query: 282 FADSFKRISEMKMRKGLALVDIVR---EVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFG 338
DS + + +KG + +DIV VT + ++K VR+ ++ ++ R+ G
Sbjct: 245 LEDSIQILRTDLWKKGYSSIDIVTTSFRVTKNLAQVK--ESVRLEMIKEIGLTHMRILEG 302
Query: 339 CNDKLQLGSIIS 350
LQL S+++
Sbjct: 303 VGTYLQLASMLA 314
>gi|351705383|gb|EHB08302.1| Replication factor C subunit 2 [Heterocephalus glaber]
Length = 352
Score = 216 bits (551), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 124/336 (36%), Positives = 189/336 (56%), Gaps = 11/336 (3%)
Query: 34 TPPDIKAS--------PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGT 85
TP KAS PWVEKYRP L ++ + D V ++ + E +P++++ GPPGT
Sbjct: 19 TPAPSKASSSAGHYELPWVEKYRPIKLNEIVGNEDTVSRLEVFSREGNVPNIIIAGPPGT 78
Query: 86 GKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLV 145
GKT++IL +AR L G + +LELNAS+DRGIDVVR +I+ FA Q + + K++
Sbjct: 79 GKTTSILCLARALLGPALKDAVLELNASNDRGIDVVRNKIKMFAQ-QKVTLP-RGRHKII 136
Query: 146 LLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHV 205
+LDEAD+MT AQ ALRR +E Y+K TRFAL CN +KII +QSRC R+ L V
Sbjct: 137 ILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQV 196
Query: 206 TERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNP 265
RL VIE E + T+ GL A++ GDMR+ALN LQST I E V+ P
Sbjct: 197 LARLLSVIEKEAVPYTDDGLEAIIFTAQGDMRQALNNLQSTFSGFGFINSENVFKVCDEP 256
Query: 266 LPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLM 325
P ++++ ++ + +++K ++ + G + D++ V +M +++ +
Sbjct: 257 HPLLVKEMLQHCVSANIDEAYKILAHL-WHLGYSPEDVIGNVFRVCKTFQMAEYLKLEFI 315
Query: 326 NDLADIEYRLSFGCNDKLQLGSIISTFTQARSAIVA 361
++ R++ G N LQ+ +++ Q A VA
Sbjct: 316 KEIGYTHMRVAEGVNSLLQMAGLLARLCQKTMAPVA 351
>gi|355716182|gb|AES05529.1| replication factor C 2, 40kDa [Mustela putorius furo]
Length = 351
Score = 216 bits (551), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 117/320 (36%), Positives = 186/320 (58%), Gaps = 3/320 (0%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP L ++ + D V ++ E +P++++ GPPGTGKT++IL +AR L G+
Sbjct: 35 PWVEKYRPVKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGS 94
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFAL 161
+ + +LELNAS+DRGIDVVR +I+ FA Q + + K+++LDEAD+MT AQ AL
Sbjct: 95 AFKDAVLELNASNDRGIDVVRNKIKMFAQ-QKVTL-PRGRHKIIILDEADSMTDGAQQAL 152
Query: 162 RRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVT 221
RR +E Y+K TRFAL CN +KII +QSRC R+ L V RL V+E E + T
Sbjct: 153 RRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLSDAQVLARLLAVLEQEKVPYT 212
Query: 222 EGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNES 281
+ GL A++ GDMR+ALN +QST I E V+ P P ++++ +N +
Sbjct: 213 DDGLEAVIFTAQGDMRQALNNVQSTFSGFGFINSENVFKVCDEPHPLLVKEMLQHCVNAN 272
Query: 282 FADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCND 341
+++K ++ + G + DI+ + +M +++ ++ ++ +++ G N
Sbjct: 273 IDEAYKILAHL-WHLGYSPEDIIGNIFRVCKTFQMAEYLKLEIIKEIGYTHMKIAEGVNS 331
Query: 342 KLQLGSIISTFTQARSAIVA 361
LQ+ +++ Q A VA
Sbjct: 332 LLQMAGLLARLCQKTMAPVA 351
>gi|440891701|gb|ELR45251.1| Replication factor C subunit 4 [Bos grunniens mutus]
Length = 364
Score = 216 bits (550), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 130/331 (39%), Positives = 199/331 (60%), Gaps = 9/331 (2%)
Query: 32 SGTPPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTI 91
SG K PWVEKYRP+ + +VA ++V + + LP+LL YGPPGTGKTSTI
Sbjct: 29 SGENKKAKPVPWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTI 88
Query: 92 LAVARKLYGAQYHNM-ILELNASDDRGIDVVRQQIQDFAS---TQSFSFGVKAS-VKLVL 146
LA AR+L+G + + +LELNASD+RGI VVR+++++FA + S S G K+V+
Sbjct: 89 LAAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPPFKIVI 148
Query: 147 LDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVT 206
LDEAD+MT AQ ALRR +EK +K TRF LICN V++II L SRC++FRF PL
Sbjct: 149 LDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQ 208
Query: 207 ERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTH--MASQQITEEAVYLCTGN 264
+RL + + E + ++ G+A LV++ GD+RKA+ LQS +++TE+ + G
Sbjct: 209 QRLLDIADKEHVKISNEGIAYLVQVSEGDLRKAITFLQSATRLTGGKEVTEKVITDIAGV 268
Query: 265 PLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRL 324
K I+ + + SF D + + + + +G A +V ++ V + SD + +
Sbjct: 269 VPAKTIDGVFAACQSGSF-DKLEAVVKDLINEGHAATQLVNQLHDVVVENDNLSDKQKSI 327
Query: 325 MND-LADIEYRLSFGCNDKLQLGSIISTFTQ 354
+ + LA+++ L+ G ++ LQL S+ +T Q
Sbjct: 328 ITEKLAEVDKCLADGADEHLQLISLCATVMQ 358
>gi|11177922|ref|NP_064406.1| replication factor C subunit 2 [Mus musculus]
gi|23813636|sp|Q9WUK4.1|RFC2_MOUSE RecName: Full=Replication factor C subunit 2; AltName:
Full=Activator 1 40 kDa subunit; Short=A1 40 kDa
subunit; AltName: Full=Activator 1 subunit 2; AltName:
Full=Replication factor C 40 kDa subunit; Short=RF-C 40
kDa subunit; Short=RFC40
gi|4972952|gb|AAD34861.1|AF139987_4 replication factor C, 40kDa subunit [Mus musculus]
gi|9800515|gb|AAF99332.1|AF289664_3 RFC2 [Mus musculus]
gi|18606185|gb|AAH23028.1| Replication factor C (activator 1) 2 [Mus musculus]
gi|26344918|dbj|BAC36108.1| unnamed protein product [Mus musculus]
gi|68534875|gb|AAH99370.1| Replication factor C (activator 1) 2 [Mus musculus]
gi|74185767|dbj|BAE32762.1| unnamed protein product [Mus musculus]
gi|148687476|gb|EDL19423.1| replication factor C (activator 1) 2, isoform CRA_a [Mus musculus]
Length = 349
Score = 216 bits (550), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 118/321 (36%), Positives = 184/321 (57%), Gaps = 3/321 (0%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP L ++ + D V ++ E +P++++ GPPGTGKT++IL +AR L G
Sbjct: 32 PWVEKYRPLKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGP 91
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFAL 161
+ +LELNAS+DRGIDVVR +I+ FA Q + K K+++LDEAD+MT AQ AL
Sbjct: 92 ALKDAVLELNASNDRGIDVVRNKIKMFAQ-QKVTLP-KGRHKIIILDEADSMTDGAQQAL 149
Query: 162 RRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVT 221
RR +E Y+K TRFAL CN +KII +QSRC R+ L V RL +VIE E + T
Sbjct: 150 RRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQVLTRLMNVIEKEKVPYT 209
Query: 222 EGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNES 281
+ GL A++ GDMR+ALN LQST I E V+ P P ++++ ++ +
Sbjct: 210 DDGLEAIIFTAQGDMRQALNNLQSTFSGFGYINSENVFKVCDEPHPLLVKEMIQHCVDAN 269
Query: 282 FADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCND 341
+++K ++ + G + D++ + M +++ + ++ +++ G N
Sbjct: 270 IDEAYKILAHL-WHLGYSPEDVIGNIFRVCKTFPMAEYLKLEFIKEIGYTHMKVAEGVNS 328
Query: 342 KLQLGSIISTFTQARSAIVAA 362
LQ+ +++ Q A VA+
Sbjct: 329 LLQMAGLLARLCQKTMAPVAS 349
>gi|384252312|gb|EIE25788.1| putative replication factor C 37 kDa subunit [Coccomyxa
subellipsoidea C-169]
Length = 329
Score = 216 bits (550), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 129/328 (39%), Positives = 183/328 (55%), Gaps = 8/328 (2%)
Query: 40 ASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLY 99
A PWV+KYRP+S+ +VA ++V T+ + LPHLL YGPPGTGKTST LA+AR+LY
Sbjct: 5 AQPWVDKYRPKSVNEVAHQEEVVHTLQKALESANLPHLLFYGPPGTGKTSTALAMARQLY 64
Query: 100 GAQYHNM-ILELNASDDRGIDVVRQQIQDFAST---QSFSFGVKASVKLVLLDEADAMTK 155
G + + ELNASD+RGI+VVR++I+ FA+T Q KL++LDEADAMT+
Sbjct: 65 GPELAKARVKELNASDERGINVVREKIKSFAATSVGQPVPGYPCPPFKLLILDEADAMTQ 124
Query: 156 DAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEA 215
DAQ ALRR +E ++K TRF ICN V++II L SRC +FRF PL ++ R+ H+
Sbjct: 125 DAQNALRRTMEAHSKVTRFIFICNYVSRIIEPLASRCAKFRFRPLHGGIMSARISHICNE 184
Query: 216 EGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISY 275
EG+ + EG + L ++ GD+RKA+ LQS E L +P+ + Q
Sbjct: 185 EGVQLQEGAMETLGKVSGGDLRKAITTLQSAVRLKGLQVEPQTLLDVSGAVPESVTQSLL 244
Query: 276 WLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDV-RVRLMNDLADIEYR 334
S + + G ++ E + K + D R R+ LA+ +
Sbjct: 245 QACRTRTVSSVQAAITDAIADGWGAQQLLLEFQAGLLKDQTLKDPQRARICTVLAEADKC 304
Query: 335 LSFGCNDKLQLGSIISTFTQARSAIVAA 362
L G ++ LQL + S A+ AI AA
Sbjct: 305 LVDGADEFLQLLHVASV---AQQAICAA 329
>gi|169767788|ref|XP_001818365.1| replication factor C subunit 2 [Aspergillus oryzae RIB40]
gi|83766220|dbj|BAE56363.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|391870557|gb|EIT79737.1| replication factor C, subunit RFC4 [Aspergillus oryzae 3.042]
Length = 391
Score = 216 bits (550), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 106/215 (49%), Positives = 148/215 (68%), Gaps = 11/215 (5%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYG- 100
PWVEKYRP++L DVAA + + R + LPH+L YGPPGTGKTSTILA+A+ L+G
Sbjct: 37 PWVEKYRPKTLDDVAAQDHTTNVLQRTLQASNLPHMLFYGPPGTGKTSTILALAKSLFGP 96
Query: 101 AQYHNMILELNASDDRGIDVVRQQIQDFASTQ-SFSFGVKAS---------VKLVLLDEA 150
A Y + ILELNASD+RGI +VR++++DFA Q S GV S K+++LDEA
Sbjct: 97 ALYRSRILELNASDERGIAIVREKVKDFARVQLSHPTGVDKSYFEKYPCPPFKIIILDEA 156
Query: 151 DAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLK 210
D+MT+DAQ ALRR +E Y+K TRF L+CN V +II L SRC++FRF PL+ +RL
Sbjct: 157 DSMTQDAQSALRRTMETYSKITRFCLVCNYVTRIIEPLASRCSKFRFKPLDNSAAGDRLA 216
Query: 211 HVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQS 245
+ + E L++ +G + L++ +GD+R+A+ +QS
Sbjct: 217 QIAKLENLELEDGVVDKLIQCSDGDLRRAITYMQS 251
>gi|427779307|gb|JAA55105.1| hypothetical protein [Rhipicephalus pulchellus]
Length = 392
Score = 216 bits (550), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 128/321 (39%), Positives = 188/321 (58%), Gaps = 14/321 (4%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP+++ DVA ++V + + LP+LL YGPPGTGKTSTILA+AR+L+G
Sbjct: 67 PWVEKYRPKTVDDVAHQDEVVSVLKKSLQGADLPNLLFYGPPGTGKTSTILALARELFGD 126
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKAS----VKLVLLDEADAMTKDA 157
Y + ILELNASD+RGI VVR++I+ F+ + G K+V+LDEAD+MT A
Sbjct: 127 MYKSRILELNASDERGIQVVREKIKTFSQLTASGTGPDGKPCPPYKIVILDEADSMTASA 186
Query: 158 QFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEG 217
Q ALRR +EK TK TRF LICN +++II L SRC++FRF PL + ERL+++ AE
Sbjct: 187 QAALRRTMEKETKTTRFCLICNYISRIIDPLTSRCSKFRFKPLPKDILLERLRNICTAEA 246
Query: 218 LDVTEGGLAALVRLCNGDMRKALNILQSTH--MASQQITEEAVYLCTGNPLPKDIEQISY 275
+ + L L+ C GDMR+A+ + QS ++Q+T E V G +P Q
Sbjct: 247 VQCDDQVLDFLMDACEGDMRRAITLFQSVSRLKCNEQVTSEDVAEVAGI-IP---NQWVD 302
Query: 276 WLLNESFADSFKRIS---EMKMRKGLALVDIVREV-TMFVFKIKMPSDVRVRLMNDLADI 331
LL ++S++++S E + +G A + ++ V K + + LA
Sbjct: 303 GLLTSCASNSYEKLSATVEDLVLEGFAASQLFSQLHDAIVLSNKYDDKQKSAIAEKLAIC 362
Query: 332 EYRLSFGCNDKLQLGSIISTF 352
++RL G ++ LQ+ + T
Sbjct: 363 DHRLLEGADEYLQIMDLCVTI 383
>gi|114052591|ref|NP_001040483.1| replication factor C4 [Bombyx mori]
gi|95103078|gb|ABF51480.1| replication factor C4 [Bombyx mori]
Length = 351
Score = 216 bits (550), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 114/236 (48%), Positives = 152/236 (64%), Gaps = 13/236 (5%)
Query: 35 PPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAV 94
PP +PWVEKYRP+++ D+ ++V + S LPHLL YGPPGTGKTS ILA
Sbjct: 29 PP----APWVEKYRPKTIDDIVDQGEVVQVLRECLSGGDLPHLLFYGPPGTGKTSAILAA 84
Query: 95 ARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKA------SVKLVLLD 148
A++L+G + +LELNASD+RGI VVR +++ FA Q G +A S KLV+LD
Sbjct: 85 AKQLFGDISRDRVLELNASDERGIQVVRDKVKAFA--QLTVSGKRADGRPCPSYKLVILD 142
Query: 149 EADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTER 208
EAD+MT AQ ALRR +E+ T+ TRF LICN V++IIP + SRC++FRF PL +V +R
Sbjct: 143 EADSMTTAAQAALRRTMERETRTTRFCLICNYVSRIIPPITSRCSKFRFKPLARENVIKR 202
Query: 209 LKHVIEAEGLDVTEGG-LAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTG 263
L+ + EAE +DV EG L V C GD+R+AL LQ +IT + + TG
Sbjct: 203 LREICEAENVDVGEGEILNQAVDTCEGDLRRALTALQCCQRLYGRITADGLIEVTG 258
>gi|255513870|gb|EET90135.1| Replication factor C [Candidatus Micrarchaeum acidiphilum ARMAN-2]
Length = 316
Score = 216 bits (549), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 105/309 (33%), Positives = 183/309 (59%), Gaps = 3/309 (0%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PW EKYRP+SL +V + IV+ + + P+++ G G GKT++ +A+A+ LY
Sbjct: 2 PWTEKYRPKSLDEVIGQKQIVERLKAFVKQGNFPNMIFAGSAGVGKTTSAIAMAKDLYDD 61
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFAL 161
+ ELNASD RGIDV+R ++++FA T S + + VK++ LDEADA+T DAQ AL
Sbjct: 62 DLNTAFKELNASDARGIDVIRGEVKNFAKTISIA---RVPVKIIFLDEADALTADAQHAL 118
Query: 162 RRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVT 221
RR +EK++ TRF L N +KII +QSRC FRF PL + E + +++ EG+ +
Sbjct: 119 RRTMEKFSAETRFILSANYASKIIEPIQSRCVVFRFKPLTEDDMKEYVNRIVKGEGITLE 178
Query: 222 EGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNES 281
+ + AL+ + +GD+RK N+LQS M S++ITE +Y PK+I + + ++
Sbjct: 179 KNAMEALIYVGDGDLRKLTNVLQSAAMKSEKITEGDIYDVASRARPKEIMSMLRYAVDGD 238
Query: 282 FADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCND 341
F + + + ++ G++ DI+ + + ++++++ + + +R+ G N+
Sbjct: 239 FDKARNELDTLTLKHGMSGEDILTQCYREAQNLHFDEKLKLKIIIYIGEANFRIVEGANE 298
Query: 342 KLQLGSIIS 350
++QL S+++
Sbjct: 299 RIQLESMLA 307
>gi|119492485|ref|XP_001263608.1| DNA replication factor C subunit Rfc2, putative [Neosartorya
fischeri NRRL 181]
gi|119411768|gb|EAW21711.1| DNA replication factor C subunit Rfc2, putative [Neosartorya
fischeri NRRL 181]
Length = 420
Score = 216 bits (549), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 107/224 (47%), Positives = 148/224 (66%), Gaps = 11/224 (4%)
Query: 33 GTPPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTIL 92
G + PWVEKYRP++L DVAA + R + LPH+L YGPPGTGKTSTIL
Sbjct: 29 GKEEQTRLQPWVEKYRPKTLDDVAAQDHTTKVLQRTLQASNLPHMLFYGPPGTGKTSTIL 88
Query: 93 AVARKLYG-AQYHNMILELNASDDRGIDVVRQQIQDFASTQ-SFSFGVKAS--------- 141
A+A+ L+G A Y + ILELNASD+RGI +VR++++ FA TQ S G+ +S
Sbjct: 89 ALAKSLFGPALYRSRILELNASDERGIGIVREKVKGFARTQLSQPTGLDSSYFEQYPCPP 148
Query: 142 VKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLE 201
K+++LDEAD+MT+DAQ ALRR +E+Y++ TRF L+CN V ++I L SRC++FRF PL+
Sbjct: 149 FKIIILDEADSMTQDAQSALRRTMEQYSRITRFCLVCNYVTRVIEPLASRCSKFRFKPLD 208
Query: 202 PVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQS 245
ERL H+ E L + EG + L+ GD+R+A+ +QS
Sbjct: 209 NSAAAERLAHIARLENLKLDEGVIDKLISCGEGDLRRAITYMQS 252
>gi|392573304|gb|EIW66444.1| hypothetical protein TREMEDRAFT_74703 [Tremella mesenterica DSM
1558]
Length = 490
Score = 216 bits (549), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 102/225 (45%), Positives = 150/225 (66%), Gaps = 9/225 (4%)
Query: 32 SGTPPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTI 91
+ P D + PWVEKYRP+++ DV++ + V + + + LPH+L YGPPGTGKTSTI
Sbjct: 138 AAPPQDPRLQPWVEKYRPKTIDDVSSQENTVAVLRKALASTNLPHMLFYGPPGTGKTSTI 197
Query: 92 LAVARKLYGAQ-YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKA--------SV 142
LA+AR+L+G + + +LELNASD+RGI VVR++I+ FA + +
Sbjct: 198 LALARQLFGPDLFRSRVLELNASDERGITVVREKIKTFARETPRHVSLSSDGKTYPCPPF 257
Query: 143 KLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEP 202
KL++LDEAD+MT DAQ ALRR++E Y++ TRF L+CN V +II L SRC++FRF PL
Sbjct: 258 KLIILDEADSMTHDAQSALRRIMETYSRITRFCLVCNYVTRIIEPLASRCSKFRFKPLAQ 317
Query: 203 VHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTH 247
R++ +++AEG+D+ +G L ++ L GD+RKA+ LQ+
Sbjct: 318 GSSQARMEMIVKAEGVDIEDGVLDRILELAGGDLRKAITFLQTAQ 362
>gi|242074030|ref|XP_002446951.1| hypothetical protein SORBIDRAFT_06g025740 [Sorghum bicolor]
gi|241938134|gb|EES11279.1| hypothetical protein SORBIDRAFT_06g025740 [Sorghum bicolor]
Length = 333
Score = 216 bits (549), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 120/316 (37%), Positives = 182/316 (57%), Gaps = 5/316 (1%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP +ADV + D V ++ + + +P+L+L GPPGTGKT++ILA+A +L G
Sbjct: 16 PWVEKYRPNRVADVVGNSDAVARLEVIARDGNMPNLILSGPPGTGKTTSILALAHELLGP 75
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQ-SFSFGVKASVKLVLLDEADAMTKDAQFA 160
Y +LELNASDDRG+DVVR +I+ FA + + G K+V+LDEAD+MT AQ A
Sbjct: 76 SYREAVLELNASDDRGLDVVRNKIKMFAQKKVTLQPGRH---KIVILDEADSMTTGAQQA 132
Query: 161 LRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDV 220
LRR +E Y+ TRFAL CN +KII +QSRC RF+ L + RL V+ AE +
Sbjct: 133 LRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLSDQEILGRLMIVVAAEKVPY 192
Query: 221 TEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNE 280
GL A++ +GDMR+ALN LQ+T + + +E V+ P P ++ + +L+
Sbjct: 193 VPEGLEAIIFTADGDMRQALNNLQATFSGFRFVNQENVFKVCDQPHPLHVKNMVKNVLDG 252
Query: 281 SFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCN 340
F ++ + ++ G + DI+ + V MP +++ ++ + R+ G
Sbjct: 253 KFDEACAALKQL-YDLGYSPTDIITTLFRVVKNYDMPEYLKLEMLKETGFAHMRICDGVG 311
Query: 341 DKLQLGSIISTFTQAR 356
LQL +++ F R
Sbjct: 312 SFLQLSGLLAKFALVR 327
>gi|198429463|ref|XP_002129985.1| PREDICTED: similar to predicted protein [Ciona intestinalis]
Length = 356
Score = 216 bits (549), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 126/326 (38%), Positives = 201/326 (61%), Gaps = 15/326 (4%)
Query: 38 IKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARK 97
+ + PWVEKYRP+ + DVA ++V + + + LP+LL YGPPGTGKTSTILA++R+
Sbjct: 29 LASKPWVEKYRPKCVDDVAHQDEVVAVLRKSLTGADLPNLLFYGPPGTGKTSTILALSRE 88
Query: 98 LYGAQ-YHNMILELNASDDRGIDVVRQQIQDFASTQSFSF---GVKAS-VKLVLLDEADA 152
L+G Q +LELN+SD+RGI+V+R+++++FA + S G K K+++LDEAD+
Sbjct: 89 LFGFQLMKERVLELNSSDERGINVIREKVKNFAQLTANSLREDGKKCPPYKIIILDEADS 148
Query: 153 MTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHV 212
MTK AQ ALRR +EK +K TRF LICN V +IIP + SRC++FRF L +RL V
Sbjct: 149 MTKAAQEALRRTMEKSSKTTRFCLICNYVTRIIPPIISRCSQFRFKSLSTEDQKKRLWMV 208
Query: 213 IEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTH--MASQQITEEAVYLCTGNPLPKDI 270
E EG+ +++ ++ LV+ GD+RKA+ LQ+ H ++ I E+ V TG +P DI
Sbjct: 209 CEKEGVKISQDAMSCLVKCSEGDLRKAMTYLQTAHRLKGAEGIDEKDVLEITG-VVPDDI 267
Query: 271 EQISYWLLNESFADSFKRISE---MKMRKGLALVDIVREVTMFVFKIKMPSDV-RVRLMN 326
+ L+ ++S ++ E + +G + I+ ++ V + +D+ + +M
Sbjct: 268 IK---SLIRSCASNSHDKVQESVDYIISEGHSAAKIISQLHDEVLTLSSLNDLQKSVVME 324
Query: 327 DLADIEYRLSFGCNDKLQLGSIISTF 352
+A ++ LS G ++ LQL ++ +T
Sbjct: 325 KIAIVDKCLSDGADEYLQLMALATTL 350
>gi|410930528|ref|XP_003978650.1| PREDICTED: replication factor C subunit 4-like [Takifugu rubripes]
Length = 357
Score = 216 bits (549), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 134/340 (39%), Positives = 199/340 (58%), Gaps = 22/340 (6%)
Query: 32 SGTPPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTI 91
S T +KA PWVEKYRP+ + +VA ++V + + LP+LL YGPPGTGKTSTI
Sbjct: 24 SSTEKTVKAVPWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTI 83
Query: 92 LAVARKLYG-AQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKL------ 144
LA AR+LYG Y +LELNASD+RGI V+R++++ FA Q G + KL
Sbjct: 84 LAAARELYGPVLYRQRVLELNASDERGIQVIREKVKTFA--QLTVAGTRPDGKLCPPFKI 141
Query: 145 VLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVH 204
++LDEAD+MT AQ ALRR +EK ++ TRF LICN +++II L SRC++FRF PL+ H
Sbjct: 142 IILDEADSMTPPAQAALRRTMEKESRTTRFCLICNYISRIIEPLTSRCSKFRFKPLDN-H 200
Query: 205 VTE-RLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMAS--QQITEEAVYLC 261
+ E RL + E E L ++ G++ALVR+ GD+RKA+ LQS S ++ITE +
Sbjct: 201 IQETRLLDICEKENLKYSKEGISALVRVSEGDLRKAITFLQSAARLSIAKEITEHTITEI 260
Query: 262 TGNPLPKDIEQISYWLLNESFADSFKRISEMKMR----KGLALVDIVREVTMFVFKIKMP 317
G K I+ LL+ F +F+++ E+ +R +G A I+ ++ + +
Sbjct: 261 AGVVPNKMIDN----LLHICFRGTFEKL-EVAVRNLVDEGYAATQILSQLHESIIEKDFG 315
Query: 318 SDVRVRLMNDLADIEYRLSFGCNDKLQLGSIISTFTQARS 357
+ + +A + + G ++ LQ+ S+ S Q S
Sbjct: 316 DKQKSAIAEKMAVVSKCMLDGADEFLQMLSLCSVIMQQSS 355
>gi|281209849|gb|EFA84017.1| replication factor C subunit [Polysphondylium pallidum PN500]
Length = 357
Score = 216 bits (549), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 128/323 (39%), Positives = 195/323 (60%), Gaps = 18/323 (5%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWV KYRP+++ +V+ ++V + R LPHLL YGPPGTGKTSTILAVA L+G
Sbjct: 16 PWVNKYRPKTVDEVSHQDEVVKALKRSLETGNLPHLLFYGPPGTGKTSTILAVAMDLFGP 75
Query: 102 Q-YHNMILELNASDDRGIDVVRQQIQDFAS-----TQSFSFGVKASV-KLVLLDEADAMT 154
+ Y + +LELNASD+RGI+VVR +I++FAS + + G A+ KL++LDEAD+MT
Sbjct: 76 ELYKDRVLELNASDERGIEVVRTKIKNFASFSVSQNNTLTNGKPAAAFKLIVLDEADSMT 135
Query: 155 KDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIE 214
DAQ ALRR+IE +K TRF L+CN + +II L SRC +FRF L + ERL+++
Sbjct: 136 HDAQAALRRIIEYTSKTTRFCLLCNYITRIIEPLSSRCAKFRFKSLNDTAMIERLRYIAS 195
Query: 215 AEGL-DVTEGGLAALVRLCNGDMRKALNILQSTH--MASQQITEEAVYLCTGNPLPKDIE 271
+E + V + A+ + +GD+RKA+ LQS++ S+++T + +Y +G PK IE
Sbjct: 196 SESMPPVKDEVYQAIHAVSDGDLRKAITYLQSSYRFYGSRELTPDNIYNISGTVPPKLIE 255
Query: 272 QISYWLLNESFADSFKRIS---EMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMN-D 327
L+N ++S+ ++ + + KG I+ ++ V K SD + L+
Sbjct: 256 T----LINTCKSNSYDKLQSNLQQLVTKGYPASQILVQIFDQVTNHKSFSDKQKALIAMK 311
Query: 328 LADIEYRLSFGCNDKLQLGSIIS 350
+ D++ L G + LQL +S
Sbjct: 312 IGDVDRNLVDGSEEFLQLFDTVS 334
>gi|384248690|gb|EIE22173.1| DNA replication factor C complex subunit 2 [Coccomyxa
subellipsoidea C-169]
Length = 366
Score = 216 bits (549), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 127/316 (40%), Positives = 185/316 (58%), Gaps = 16/316 (5%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEK+RP + D+ + D VD + ++ E +P+++L GPPGTGKT++IL +AR L G
Sbjct: 44 PWVEKFRPLYVKDIVGNTDAVDRLQVISEEGNMPNIILAGPPGTGKTTSILCLARALLGQ 103
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQ-SFSFGVKASVKLVLLDEADAMTKDAQFA 160
Y +LELNASDDRGIDVVR +I+ FA + + G K+V+LDEAD+MT AQ A
Sbjct: 104 NYKEGVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRH---KVVILDEADSMTTGAQQA 160
Query: 161 LRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDV 220
LRR +E Y+ TRFAL CN +KII +QSRC R+ L V ERL V +E +
Sbjct: 161 LRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRYTKLSDKEVLERLLVVCRSESVPY 220
Query: 221 TEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNE 280
+ GL A++ +GDMR+ALN LQ+T+ IT E V+ P P I +I
Sbjct: 221 VDEGLGAVIFTADGDMRQALNNLQATYYGFGMITPEHVFKVCDQPHPLLISEIVKNCTAA 280
Query: 281 SF---ADSFKRISEMKMRKGLALVDIVREVTMF-VFK--IKMPSDVRVRLMNDLADIEYR 334
+ D K+I +M G + +DI++ T+F V K K+P +++ + ++ R
Sbjct: 281 NIDGAYDGMKKICDM----GYSSMDIIQ--TLFRVVKNDPKLPEFLKLEFIREVGFCHMR 334
Query: 335 LSFGCNDKLQLGSIIS 350
+ G N +LQL +++
Sbjct: 335 IEDGVNSRLQLSGLLA 350
>gi|308807567|ref|XP_003081094.1| replication factor C 37 kDa subunit (ISS) [Ostreococcus tauri]
gi|116059556|emb|CAL55263.1| replication factor C 37 kDa subunit (ISS) [Ostreococcus tauri]
Length = 342
Score = 216 bits (549), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 120/320 (37%), Positives = 194/320 (60%), Gaps = 16/320 (5%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP+++ DVA+ +V +++ +PH L YGPPGTGKT+ LA+A++LYG
Sbjct: 17 PWVEKYRPKTVRDVASQEQVVRVLEQALETGNMPHCLFYGPPGTGKTTCALAIAKQLYGP 76
Query: 102 Q-YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKAS------VKLVLLDEADAMT 154
+ Y + ELNASD+RGI VVR +++ FAS + G A K+++LDEADAMT
Sbjct: 77 ELYKQRVKELNASDERGISVVRDKVKTFAS---LAVGAPAPGYPSPPYKILILDEADAMT 133
Query: 155 KDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIE 214
DAQ A+RR++E Y+K TRF L+CN V KII + SRC +FRF PL +T RLK++ E
Sbjct: 134 TDAQSAMRRMMETYSKVTRFFLLCNYVTKIIDPITSRCAKFRFQPLALETMTTRLKYIAE 193
Query: 215 AEGLDVTEGGLAALVRLCNGDMRKALNILQS-THMASQQITEEAVYLCTGNPLPKDIEQI 273
E L++++ A + GDMRKA+ +LQS + S ++ + G +P D++
Sbjct: 194 QESLELSDDVFPACSKHSGGDMRKAITLLQSAARLFSGKVDAAGIVEVAGY-IP-DVKLT 251
Query: 274 SYWLLNESFADSFKRISEMK--MRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADI 331
+ L +S D K + M+ +R G + + I+ +++ V + +++ + + ++
Sbjct: 252 TLLDLCKS-GDFDKAQAHMEDILRDGYSGIKIMDQLSDIVLEADCSDEIKGDIFMKMGEV 310
Query: 332 EYRLSFGCNDKLQLGSIIST 351
+ L+ G ++ LQL +++S+
Sbjct: 311 DRALAQGADEGLQLATVVSS 330
>gi|73957665|ref|XP_546916.2| PREDICTED: replication factor C subunit 2 isoform 1 [Canis lupus
familiaris]
Length = 352
Score = 216 bits (549), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 118/321 (36%), Positives = 184/321 (57%), Gaps = 3/321 (0%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP L ++ + D V ++ E +P++++ GPPGTGKT++IL +AR L G
Sbjct: 35 PWVEKYRPVKLNEIVGNEDTVSRLEVFAKEGNVPNIIIAGPPGTGKTTSILCLARALLGP 94
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFAL 161
+ +LELNAS+DRGIDVVR +I+ FA Q + K K+++LDEAD+MT AQ AL
Sbjct: 95 ALKDAVLELNASNDRGIDVVRNKIKMFAQ-QKVTL-PKGRHKIIILDEADSMTDGAQQAL 152
Query: 162 RRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVT 221
RR +E Y+K TRFAL CN +KII +QSRC R+ L V RL V+E E + T
Sbjct: 153 RRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLSDAQVLARLLTVLEQEKVPYT 212
Query: 222 EGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNES 281
+ GL A++ GDMR+ALN +QST I E V+ P P ++++ +N +
Sbjct: 213 DDGLEAVIFTAQGDMRQALNNVQSTFSGFGFINSENVFKVCDEPHPLLVKEMIQHCVNAN 272
Query: 282 FADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCND 341
+++K ++ + G + DI+ + +M +++ + ++ +++ G N
Sbjct: 273 IDEAYKILAHL-WHLGYSPEDIIGNIFRVCKTFQMAEYLKLEFIKEIGYTHMKIAEGVNS 331
Query: 342 KLQLGSIISTFTQARSAIVAA 362
LQ+ +++ Q A VA+
Sbjct: 332 LLQMAGLLARLCQKTMAPVAS 352
>gi|348041239|ref|NP_001013344.2| replication factor C subunit 2 [Danio rerio]
Length = 353
Score = 215 bits (548), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 116/309 (37%), Positives = 179/309 (57%), Gaps = 3/309 (0%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP L ++ + + V ++ E +P++++ GPPGTGKT++IL +AR L G
Sbjct: 36 PWVEKYRPLKLNEIVGNEETVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGP 95
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFAL 161
+ +LELNAS+DRGIDVVR +I+ FA Q + K K+++LDEAD+MT AQ AL
Sbjct: 96 AMKDAVLELNASNDRGIDVVRNKIKMFAQ-QKVTLP-KGRHKIIILDEADSMTDGAQQAL 153
Query: 162 RRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVT 221
RR +E Y+K TRFAL CN +KII +QSRC R++ L + RL V+E E L VT
Sbjct: 154 RRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYSKLRDEQIMMRLTEVVEKENLHVT 213
Query: 222 EGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNES 281
GL A++ GDMR+ALN LQST+ I E V+ P P ++ + +N +
Sbjct: 214 NDGLEAIIFTAQGDMRQALNNLQSTNSGFGYINSENVFKVCDEPHPLLVKSMLEHCVNAN 273
Query: 282 FADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCND 341
+++K I ++ G + DI+ + +M +++ + ++ +++ G N
Sbjct: 274 IDEAYKIIEQL-WSLGYSPEDIIGNIFRVCKTFQMAEYLKLEYIKEIGYTHMKVAEGVNS 332
Query: 342 KLQLGSIIS 350
LQ+ ++
Sbjct: 333 LLQMAGLLG 341
>gi|66360032|ref|XP_627194.1| replication factor C like AAA ATpase [Cryptosporidium parvum Iowa
II]
gi|46228833|gb|EAK89703.1| replication factor C like AAA ATpase [Cryptosporidium parvum Iowa
II]
Length = 335
Score = 215 bits (548), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 108/242 (44%), Positives = 155/242 (64%), Gaps = 11/242 (4%)
Query: 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA- 101
WVEKYRP ++ D++ H+D+V + + +PHLL +GPPGTGKTS +LA++R+L+G
Sbjct: 9 WVEKYRPGNVLDISHHKDVVSMLSHVLKNGNMPHLLFHGPPGTGKTSAVLALSRELFGPN 68
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFA-------STQSFSFGVKASVKLVLLDEADAMT 154
+Y N ILELNASD+RGI VVR +I+ + T + + S K+V+LDEA+ MT
Sbjct: 69 EYKNRILELNASDERGISVVRDKIKSWTRQVVQCNKTHEITGNLLPSWKIVILDEAEMMT 128
Query: 155 KDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIE 214
DAQ ALRR+IE +KNTRF +ICN ++KII L SRC +FRF P+ ERLK++
Sbjct: 129 ADAQSALRRIIEVSSKNTRFVIICNYISKIIEPLASRCAKFRFQPISANSQIERLKYICS 188
Query: 215 AEGLDVTEGGLAALVRLCNGDMRKALNILQSTHM---ASQQITEEAVYLCTGNPLPKDIE 271
E + +G L +V L GD+R+ +NILQS ++I+ ++ +G P K IE
Sbjct: 189 QEDVSYEDGVLETIVNLSQGDLRRGINILQSASELFGKDKRISMSSILDVSGVPPIKIIE 248
Query: 272 QI 273
+I
Sbjct: 249 RI 250
>gi|440640436|gb|ELR10355.1| hypothetical protein GMDG_04737 [Geomyces destructans 20631-21]
Length = 389
Score = 215 bits (548), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 107/213 (50%), Positives = 145/213 (68%), Gaps = 9/213 (4%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYG- 100
PWVEKYRP+SLADV A + + R + LPH+L YGPPGTGKTSTILA++R LYG
Sbjct: 36 PWVEKYRPKSLADVTAQDHTITVLQRTLQSSNLPHMLYYGPPGTGKTSTILALSRSLYGP 95
Query: 101 AQYHNMILELNASDDRGIDVVRQQIQDFASTQ-SFSFG-------VKASVKLVLLDEADA 152
A +H+ +LELNASD+RGI +VR++++DFA Q S G + K+++LDEAD+
Sbjct: 96 ALFHSRVLELNASDERGISIVRKKVKDFARMQLSRPPGGNYQEQYLCPPYKIIILDEADS 155
Query: 153 MTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHV 212
MT+DAQ ALRR +E Y+K TRF L+CN V +II L SRC++FRF + RL+ +
Sbjct: 156 MTQDAQSALRRTMETYSKITRFCLVCNYVTRIIDPLASRCSKFRFKRMGEGQAGTRLREI 215
Query: 213 IEAEGLDVTEGGLAALVRLCNGDMRKALNILQS 245
E E + + EG + AL++ GD+RKA+ LQS
Sbjct: 216 AEKEKVPMEEGVVEALIKHSEGDLRKAITFLQS 248
>gi|147904320|ref|NP_001084837.1| replication factor C (activator 1) 2, 40kDa [Xenopus laevis]
gi|47124709|gb|AAH70622.1| MGC81391 protein [Xenopus laevis]
Length = 348
Score = 215 bits (548), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 114/313 (36%), Positives = 181/313 (57%), Gaps = 3/313 (0%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP L ++ + + V ++ E +P++++ GPPGTGKT++IL +AR L G
Sbjct: 32 PWVEKYRPLKLNEIVGNEETVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGP 91
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFAL 161
+ +LELNAS+DRGIDVVR +I+ FA Q + K K+++LDEAD+MT AQ AL
Sbjct: 92 TMKDAVLELNASNDRGIDVVRNKIKMFAQ-QKVTLP-KGRHKIIILDEADSMTDGAQQAL 149
Query: 162 RRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVT 221
RR +E Y+K TRFAL CN +KII +QSRC R+ L V RL V+E E + T
Sbjct: 150 RRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQVLARLMDVVEKEKVQCT 209
Query: 222 EGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNES 281
+ GL A+V GDMR+ALN +QST + V+ P P ++++ +N +
Sbjct: 210 DDGLEAIVFTAQGDMRQALNNVQSTCAGFGFVNSTNVFKVCDEPHPLLVKEMLQHCVNAN 269
Query: 282 FADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCND 341
+++K ++ + + G + DI+ + +MP +++ + ++ +++ G N
Sbjct: 270 IDEAYKIVAHL-WKLGYSPEDIIGNIFRVCKTFQMPEYLKLEFIKEIGYTHMKIAEGVNS 328
Query: 342 KLQLGSIISTFTQ 354
LQ+ +++ Q
Sbjct: 329 LLQMAGLLARLCQ 341
>gi|299117347|emb|CBN75303.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 354
Score = 215 bits (548), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 123/320 (38%), Positives = 182/320 (56%), Gaps = 12/320 (3%)
Query: 36 PDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVA 95
P + PWVEKYRP+++ DVA ++ +T+ + LPHLL YGPPGTGKTST LA+A
Sbjct: 23 PPARLQPWVEKYRPKTVDDVAHQDEVTNTLKGAIATGVLPHLLFYGPPGTGKTSTALALA 82
Query: 96 RKLYGAQ-YHNMILELNASDDRGIDVVRQQIQDFA------STQSFSFGVKASVKLVLLD 148
R L+G Y + ILELNASD+RGI VVR++I+ FA +T + K+++LD
Sbjct: 83 RTLFGPDTYRDRILELNASDERGIKVVREKIKTFAQVAVGRATHQAGYPCP-PFKVIILD 141
Query: 149 EADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTER 208
EAD MT DAQ ALRR +E Y+ TRF LICN V +II L SRC +FRF+ L + +R
Sbjct: 142 EADTMTPDAQSALRRTMETYSTVTRFCLICNYVTRIIEPLASRCAKFRFSALGQGAMLDR 201
Query: 209 LKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHM--ASQQITEEAVYLCTGNPL 266
L ++ E + + GL A+V L GDMRKA+ +QS A ++T E + G +
Sbjct: 202 LSYISREEDVKIAADGLQAIVDLSGGDMRKAVTAMQSASQFYAGAEVTPEVLVDIAGK-I 260
Query: 267 PKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVT-MFVFKIKMPSDVRVRLM 325
P ++++ + + + + M G L ++ ++ V +P + +
Sbjct: 261 PAEVKEALWSAIKSGSYNKIVAAVDDFMSSGYPLSTLLEDMQEATVADTTIPDHKKADIC 320
Query: 326 NDLADIEYRLSFGCNDKLQL 345
+A+ + L GCN++LQL
Sbjct: 321 RRIAEADRCLIDGCNEELQL 340
>gi|452820599|gb|EME27639.1| replication factor C subunit 2/4 [Galdieria sulphuraria]
Length = 321
Score = 215 bits (548), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 120/314 (38%), Positives = 182/314 (57%), Gaps = 4/314 (1%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP++L +V + +V + + LPHLLL GPPG GKT+ IL +AR+L G
Sbjct: 4 PWVEKYRPKTLDEVVGNPQVVSRLQAVVHGGSLPHLLLSGPPGCGKTTMILCLARQLLGE 63
Query: 102 QYHNM-ILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFA 160
++ + +LELNASDDRGIDV+R +++ FA Q S K+V+LDEAD+MT+ AQ A
Sbjct: 64 EWFSQAVLELNASDDRGIDVIRSKVKTFAQ-QKMSLP-SGKHKIVILDEADSMTEGAQQA 121
Query: 161 LRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDV 220
LRR +E Y TRFAL CN +KII +QSRC R LE + ERL+ V+ E ++
Sbjct: 122 LRRTMEIYATTTRFALACNTPSKIIEPIQSRCAVVRLRRLEDSEIAERLEQVLRLENVEW 181
Query: 221 TEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNE 280
GL A++ +GDMR ALN Q+T ++++E V+ P P ++QI L +
Sbjct: 182 ENSGLEAILFTADGDMRNALNNAQATVCGFGKLSQENVFKVCDQPHPNLVKQILESALEQ 241
Query: 281 SFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCN 340
+ S + + + KG + +DIV+ + +M +R+ +M + ++ GC
Sbjct: 242 NVTKSNEILCSL-WNKGYSALDIVQTLFRVARSHEMNEHLRLEVMKIVGKTHMKIMEGCA 300
Query: 341 DKLQLGSIISTFTQ 354
+QL ++ S ++
Sbjct: 301 SLIQLTALTSFLSE 314
>gi|388583076|gb|EIM23379.1| P-loop containing nucleoside triphosphate hydrolase protein
[Wallemia sebi CBS 633.66]
Length = 331
Score = 215 bits (548), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 127/316 (40%), Positives = 196/316 (62%), Gaps = 16/316 (5%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP+++ DVAA + + + LPH+L YGPPGTGKTSTILA++R+L+G
Sbjct: 8 PWVEKYRPRTIEDVAAQDHTIRVLKKQLGNANLPHMLFYGPPGTGKTSTILALSRQLFGQ 67
Query: 102 QY-HNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASV---KLVLLDEADAMTKDA 157
+ +LELNASD+RGI+VVR++I++FA Q+ ASV K+++LDEAD+MT+DA
Sbjct: 68 DLVKSRVLELNASDERGINVVREKIKNFAK-QAPKASTSASVPAYKIIILDEADSMTQDA 126
Query: 158 QFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEG 217
Q ALRR +E Y+K+TRF L+CN V +II + SRC++FRF PL+ RL+++ + E
Sbjct: 127 QSALRRTMETYSKSTRFCLVCNYVTRIIEPVASRCSKFRFKPLDESDSKARLEYIAQEEN 186
Query: 218 LDVTEGGLAALVRLCNGDMRKALNILQST---HMASQQ-ITEEAVYLCTGNPLPKDIEQI 273
+ + EG + AL+ +GD+R+A+ LQS H AS IT + + G +P++I I
Sbjct: 187 IPLNEGVIDALIDNTHGDLRQAITYLQSAARLHQASNSAITVDTITEIAGT-IPENI--I 243
Query: 274 SYWLLNESFADSFKRI-SEMKMRK--GLALVDIVREV-TMFVFKIKMPSDVRVRLMNDLA 329
+ S +FK I S +K G A ++ ++ F+ + + + + +A
Sbjct: 244 DNIIQVCSNKKNFKEIQSTIKQIHLFGYASAQVLLQLHDKFIENTSISDTSKSKAILSIA 303
Query: 330 DIEYRLSFGCNDKLQL 345
+ + L+ G +D+LQL
Sbjct: 304 EADKALTDGADDELQL 319
>gi|167999374|ref|XP_001752392.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162696292|gb|EDQ82631.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 333
Score = 215 bits (548), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 120/316 (37%), Positives = 183/316 (57%), Gaps = 5/316 (1%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP +AD+ ++D+V + + +P+L+ GPPGTGKT++ILA+A +L G
Sbjct: 17 PWVEKYRPHRVADIVGNQDVVARLQVIAQGGNMPNLIFSGPPGTGKTTSILALAHELLGP 76
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQ-SFSFGVKASVKLVLLDEADAMTKDAQFA 160
+ +LELNASDDRGIDVVR +I+ FA + + G K+VLLDEAD+MT AQ A
Sbjct: 77 NFKEAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRH---KVVLLDEADSMTAGAQQA 133
Query: 161 LRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDV 220
LRR +E Y+ TRFAL CN +KII +QSRC RF+ L + +RL V+EAE +
Sbjct: 134 LRRTMEIYSNTTRFALACNLSSKIIEPIQSRCAIVRFSRLSDSEILDRLLRVVEAEKVPY 193
Query: 221 TEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNE 280
GL A+V +GDMR+ALN LQ+T Q + ++ V+ P P +QI +
Sbjct: 194 VPEGLEAVVFTADGDMRQALNNLQATFSGFQFVNQDNVFRVCDQPHPLLAQQIIKHCIAG 253
Query: 281 SFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCN 340
+ D++ + ++ G + DI+ + V +M +++ + ++ R++ G
Sbjct: 254 NIDDAYTGLKQL-YDMGYSATDIITTLFRVVKNYEMVEFLKLEFIREVGFAHMRIADGVG 312
Query: 341 DKLQLGSIISTFTQAR 356
LQL +++ + R
Sbjct: 313 TLLQLSGLLAKLCKVR 328
>gi|60477744|gb|AAH90779.1| Zgc:110810 [Danio rerio]
gi|182890088|gb|AAI64018.1| Zgc:110810 protein [Danio rerio]
Length = 349
Score = 215 bits (548), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 116/309 (37%), Positives = 179/309 (57%), Gaps = 3/309 (0%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP L ++ + + V ++ E +P++++ GPPGTGKT++IL +AR L G
Sbjct: 32 PWVEKYRPLKLNEIVGNEETVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGP 91
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFAL 161
+ +LELNAS+DRGIDVVR +I+ FA Q + K K+++LDEAD+MT AQ AL
Sbjct: 92 AMKDAVLELNASNDRGIDVVRNKIKMFAQ-QKVTLP-KGRHKIIILDEADSMTDGAQQAL 149
Query: 162 RRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVT 221
RR +E Y+K TRFAL CN +KII +QSRC R++ L + RL V+E E L VT
Sbjct: 150 RRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYSKLRDEQIMMRLTEVVEKENLHVT 209
Query: 222 EGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNES 281
GL A++ GDMR+ALN LQST+ I E V+ P P ++ + +N +
Sbjct: 210 NDGLEAIIFTAQGDMRQALNNLQSTNSGFGYINSENVFKVCDEPHPLLVKSMLEHCVNAN 269
Query: 282 FADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCND 341
+++K I ++ G + DI+ + +M +++ + ++ +++ G N
Sbjct: 270 IDEAYKIIEQL-WSLGYSPEDIIGNIFRVCKTFQMAEYLKLEYIKEIGYTHMKVAEGVNS 328
Query: 342 KLQLGSIIS 350
LQ+ ++
Sbjct: 329 LLQMAGLLG 337
>gi|410898978|ref|XP_003962974.1| PREDICTED: replication factor C subunit 2-like [Takifugu rubripes]
Length = 350
Score = 215 bits (548), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 114/309 (36%), Positives = 183/309 (59%), Gaps = 3/309 (0%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP L +V + + V ++ E +P++++ GPPGTGKT++IL +AR L GA
Sbjct: 33 PWVEKYRPLKLNEVVGNEETVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGA 92
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFAL 161
+ +LELNAS+DRGIDVVR +I+ FA Q + + K+++LDEAD+MT AQ AL
Sbjct: 93 STKDAVLELNASNDRGIDVVRNKIKMFAQ-QKVTLP-RGRHKIIILDEADSMTDGAQQAL 150
Query: 162 RRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVT 221
RR++E Y+K TRFAL CN +KII +QSRC R++ L + RL+ V+E E L V+
Sbjct: 151 RRIMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYSKLTDGQILARLQEVVEKEALSVS 210
Query: 222 EGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNES 281
+ GL A++ GDMR+ALN LQST+ + E V+ P P ++ + ++ +
Sbjct: 211 DDGLEAVIFTAQGDMRQALNNLQSTNAGFGFVNSENVFKVCDEPHPLLVKSMLGHCVDGN 270
Query: 282 FADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCND 341
+++K + ++ G + DI+ + +M +++ + ++ R++ G N
Sbjct: 271 IDEAYKVVEQL-WALGYSPEDIIGNIFRVCKTYQMAEYLKLEFIKEIGYTHMRVAEGVNS 329
Query: 342 KLQLGSIIS 350
LQ+ ++
Sbjct: 330 LLQMAGLLG 338
>gi|426200510|gb|EKV50434.1| hypothetical protein AGABI2DRAFT_200125 [Agaricus bisporus var.
bisporus H97]
Length = 349
Score = 215 bits (548), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 101/217 (46%), Positives = 147/217 (67%), Gaps = 9/217 (4%)
Query: 37 DIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVAR 96
D + PWVEKYRP+++ DV+A + + + + LPH+L YGPPGTGKTSTILA+AR
Sbjct: 21 DAELQPWVEKYRPKTIEDVSAQEHTIAVLRKTLTSTNLPHMLFYGPPGTGKTSTILALAR 80
Query: 97 KLYGA-QYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKAS--------VKLVLL 147
+L+G + N +LELNASD+RGI +VR++I++FA + V + K+++L
Sbjct: 81 QLFGPDNFKNRVLELNASDERGISIVREKIKNFARQTPRAQAVASDGKTYPCPPYKIIIL 140
Query: 148 DEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTE 207
DEAD+MT+DAQ ALRR++E Y + TRF L+CN V +II L SRC++FRF PL+ T
Sbjct: 141 DEADSMTQDAQGALRRIMETYARITRFCLVCNYVTRIIEPLASRCSKFRFTPLDSESATS 200
Query: 208 RLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQ 244
RL ++ + E +DV + AL+ + NGD+R+A+ LQ
Sbjct: 201 RLTYIAKEEQIDVDTSVIDALITVSNGDLRRAITYLQ 237
>gi|146418251|ref|XP_001485091.1| conserved hypothetical protein [Meyerozyma guilliermondii ATCC
6260]
Length = 256
Score = 215 bits (548), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 113/255 (44%), Positives = 166/255 (65%), Gaps = 9/255 (3%)
Query: 106 MILELNASDDRGIDVVRQQIQDFAST-QSFSFGVKASVKLVLLDEADAMTKDAQFALRRV 164
M+LELNASDDRGIDVVR +I++FAST Q FS G K L++LDEAD+MT AQ +LRR+
Sbjct: 1 MVLELNASDDRGIDVVRNEIKNFASTMQIFSRGFK----LIILDEADSMTAVAQNSLRRI 56
Query: 165 IEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGG 224
IEKYTKNTRF ++ N +K+ PAL SRCTRFRF P+ + + E L+ VI E L +
Sbjct: 57 IEKYTKNTRFCILANYSHKLNPALISRCTRFRFHPISELAIKENLQPVIVKEHLSIQPSA 116
Query: 225 LAALVRLCNGDMRKALNILQSTHMA----SQQITEEAVYLCTGNPLPKDIEQISYWLLNE 280
+ AL+RL GDMRKALN+LQ+ + +I E +Y C G P P+DIE +L +
Sbjct: 117 VDALLRLSKGDMRKALNVLQACKASLSKDGDEIDETMIYDCLGAPQPQDIEGALDSILKD 176
Query: 281 SFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCN 340
+ ++ I ++K +KGLAL+D++ + + ++ R+ ++ L+++EY ++ G N
Sbjct: 177 EWTTAYLTIEKLKKQKGLALIDLISGIVEILNNYELKPATRIDILKGLSEVEYGIARGGN 236
Query: 341 DKLQLGSIISTFTQA 355
DK+Q +I+ +A
Sbjct: 237 DKIQSSAIVGVIKEA 251
>gi|350635059|gb|EHA23421.1| hypothetical protein ASPNIDRAFT_47138 [Aspergillus niger ATCC 1015]
Length = 758
Score = 215 bits (548), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 109/236 (46%), Positives = 151/236 (63%), Gaps = 19/236 (8%)
Query: 21 KPKDNGKNVIVSGTPPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLY 80
KP DN + K PWVEKYRP++L DVAA + R + LPH+L Y
Sbjct: 392 KPTDNKEE--------QAKQQPWVEKYRPKTLDDVAAQDHTTKVLQRTLQASNLPHMLFY 443
Query: 81 GPPGTGKTSTILAVARKLYGAQ-YHNMILELNASDDRGIDVVRQQIQDFASTQ-SFSFGV 138
GPPGTGKTSTILA+A+ L+G Y + ILELNASD+RGI +VR++I++FA Q + S G+
Sbjct: 444 GPPGTGKTSTILALAKSLFGPSLYRSRILELNASDERGIGIVREKIKNFARAQLTHSTGL 503
Query: 139 KAS---------VKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQ 189
K+++LDEAD+MT+DAQ ALRR +E+Y++ TRF L+CN V +II L
Sbjct: 504 GEEYLAQYPCPPFKIIILDEADSMTQDAQSALRRTMEQYSRITRFCLVCNYVTRIIEPLA 563
Query: 190 SRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQS 245
SRC++FRF L+ ERL+H+ + E L + +G + L+ GDMR+A+ +QS
Sbjct: 564 SRCSKFRFKALDNTAAGERLEHIAKVENLRLEDGVVDKLIACSEGDMRRAITYMQS 619
>gi|296192221|ref|XP_002743970.1| PREDICTED: replication factor C subunit 2 isoform 1 [Callithrix
jacchus]
Length = 352
Score = 215 bits (548), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 118/321 (36%), Positives = 183/321 (57%), Gaps = 3/321 (0%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP L ++ + D V ++ E +P++++ GPPGTGKT++IL +AR L G
Sbjct: 35 PWVEKYRPVKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGP 94
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFAL 161
+ +LELNAS+DRGIDVVR +++ FA Q K K+++LDEAD+MT AQ AL
Sbjct: 95 ALKDAVLELNASNDRGIDVVRNKVKMFA--QHKVTLPKGRHKIIILDEADSMTDGAQQAL 152
Query: 162 RRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVT 221
RR +E Y+K TRFAL CN +KII +QSRC R+ L + RL VIE E + T
Sbjct: 153 RRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQILTRLMSVIEKERVPHT 212
Query: 222 EGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNES 281
+ GL A++ GDMR+ALN LQST I E V+ P P ++++ +N +
Sbjct: 213 DDGLEAIIFTAQGDMRQALNNLQSTFSGFGFINSENVFKVCDEPHPLLVKEMIQHCVNAN 272
Query: 282 FADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCND 341
+++K ++ + G + DI+ + +M +++ + ++ +++ G N
Sbjct: 273 IDEAYKILAHL-WHLGYSPEDIIGNIFRVCKTFQMAEYLKLEFIKEIGYTHMKIAEGVNS 331
Query: 342 KLQLGSIISTFTQARSAIVAA 362
LQ+ +++ Q A VA+
Sbjct: 332 LLQMAGLLARLCQKTMAPVAS 352
>gi|260820974|ref|XP_002605809.1| hypothetical protein BRAFLDRAFT_123856 [Branchiostoma floridae]
gi|229291144|gb|EEN61819.1| hypothetical protein BRAFLDRAFT_123856 [Branchiostoma floridae]
Length = 362
Score = 215 bits (548), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 126/355 (35%), Positives = 198/355 (55%), Gaps = 12/355 (3%)
Query: 1 MAEAETVSLMDFDEDENQNLKPKDNGKNV-----IVSGTPPDIKASPWVEKYRPQSLADV 55
MA+ E M+ D + PK + V SGT + PWVEKYRP L DV
Sbjct: 1 MADGEG---MEVDTPQTNKEAPKKDSSKVDKAKPGTSGTSSGYEL-PWVEKYRPAKLCDV 56
Query: 56 AAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDD 115
+ D V ++ + + +P++++ G PG GKT++IL +AR L G Y + +LELNAS+D
Sbjct: 57 VGNEDTVSRLEVFSQQGNMPNIIIAGSPGIGKTTSILCLARTLLGPAYKDAVLELNASND 116
Query: 116 RGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFA 175
RGIDVVR +I+ FA Q + K K+++LDEAD+MT AQ ALRR +E Y+K TRFA
Sbjct: 117 RGIDVVRNKIKMFAQ-QKVTL-PKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFA 174
Query: 176 LICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGD 235
L CN +KII A+QSRC R++ L + ERL +V E E ++ T+ GL A++ GD
Sbjct: 175 LACNASDKIIEAIQSRCAVLRYSKLTDNQILERLLYVCEKENVEHTDDGLEAVIFTAQGD 234
Query: 236 MRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMR 295
MR+ALN LQST + E V+ P P ++++ ++ + +++K + + +
Sbjct: 235 MRQALNNLQSTWSGFGYVNSENVFKVCDEPHPLLVKEMLGHCVDANIDEAYKILKHL-WK 293
Query: 296 KGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDKLQLGSIIS 350
G + DI+ + +M +++ + ++ R+ G + LQL +++
Sbjct: 294 MGYSPEDIIGNIFRVCKTYQMHEYLKLEFIKEIGYTHMRIVQGVDSLLQLSGLLA 348
>gi|296421403|ref|XP_002840254.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295636469|emb|CAZ84445.1| unnamed protein product [Tuber melanosporum]
Length = 372
Score = 215 bits (547), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 103/213 (48%), Positives = 150/213 (70%), Gaps = 10/213 (4%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP++L DV+A + + R + LPH+L YGPPGTGKTST+LA+A++LYG
Sbjct: 35 PWVEKYRPKNLNDVSAQDHTISVLKRTLQSSNLPHMLFYGPPGTGKTSTVLALAKELYGP 94
Query: 102 QY-HNMILELNASDDRGIDVVRQQIQDFA--------STQSFSFGVKASVKLVLLDEADA 152
+ + +LELNASD+RGI +VR+++++FA STQS ++ K+++LDEAD+
Sbjct: 95 ELMKSRVLELNASDERGISIVREKVKNFARITVSTASSTQSSNYPC-PPYKIIILDEADS 153
Query: 153 MTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHV 212
MT+DAQ ALRR +E Y+K TRF LICN V +II L SRC++FRF PL+ + RL+ +
Sbjct: 154 MTQDAQSALRRTMETYSKITRFCLICNYVTRIIDPLASRCSKFRFKPLDEENAKLRLEEI 213
Query: 213 IEAEGLDVTEGGLAALVRLCNGDMRKALNILQS 245
+ E ++ +G + AL+++ GD+RKA+ LQS
Sbjct: 214 AKMENVEYEDGVIDALIKVSEGDLRKAITYLQS 246
>gi|346471367|gb|AEO35528.1| hypothetical protein [Amblyomma maculatum]
Length = 358
Score = 215 bits (547), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 113/239 (47%), Positives = 154/239 (64%), Gaps = 7/239 (2%)
Query: 12 FDEDENQNLK-PKDNGKNVIVSGTPPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTS 70
F + N NL PK+ K + P PWVEKYRP+++ DVA ++V + +
Sbjct: 4 FLKSANPNLAFPKEKTKESKQTAKKP--VHIPWVEKYRPKTVDDVAHQDEVVSVLKKSLQ 61
Query: 71 ENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFAS 130
LP+LL YGPPGTGKTSTILA+AR+L+G Y + ILELNASD+RGI VVR++I+ F+
Sbjct: 62 GADLPNLLFYGPPGTGKTSTILALARELFGDMYKSRILELNASDERGIQVVREKIKTFSQ 121
Query: 131 TQSFSFGVKAS----VKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIP 186
+ + G K+V+LDEAD+MT AQ ALRR +EK TK+TRF LICN +++II
Sbjct: 122 LTAHAVGPDGKPCPPFKIVILDEADSMTASAQAALRRTMEKETKSTRFCLICNYISRIID 181
Query: 187 ALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQS 245
L SRC++FRF PL + ERL+ + AEG+ + L L+ C GDMR+A+ + QS
Sbjct: 182 PLTSRCSKFRFKPLPKEVLLERLRSICTAEGVQCEDEVLDFLMDACEGDMRRAITLFQS 240
>gi|223477952|ref|YP_002582171.1| replication factor C small subunit [Thermococcus sp. AM4]
gi|214033178|gb|EEB74006.1| Replication factor C small subunit [Thermococcus sp. AM4]
Length = 870
Score = 215 bits (547), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 103/266 (38%), Positives = 178/266 (66%), Gaps = 3/266 (1%)
Query: 88 TSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLL 147
T+ LA+AR+L+G + + LELNASD+RGI+V+R+++++FA T+ + AS K++ L
Sbjct: 600 TTAALALARELFGENWRHNFLELNASDERGINVIREKVKEFARTKPVA---GASFKIIFL 656
Query: 148 DEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTE 207
DEADA+T+DAQ ALRR +E ++ N RF L CN +KII +QSRC FRF PL + +
Sbjct: 657 DEADALTQDAQQALRRTMEMFSNNVRFILSCNYSSKIIEPIQSRCAIFRFRPLNDEDIAK 716
Query: 208 RLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLP 267
R+K++ E EGL++TE GL A++ + GD+R+A+N+LQ+ ++IT+E V+L P
Sbjct: 717 RIKYIAEQEGLELTEEGLQAILYVAEGDLRRAINVLQAAAALDKKITDENVFLVASRARP 776
Query: 268 KDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMND 327
+D+ ++ L +F + +++ E+ +++GL+ D++ ++ VF + +P D +V L +
Sbjct: 777 EDVREMMTLALEGNFLKAREKLREVLLKQGLSGEDVLIQMHKEVFNLPIPEDKKVALADK 836
Query: 328 LADIEYRLSFGCNDKLQLGSIISTFT 353
+ + +RL G N+ +QL ++++ FT
Sbjct: 837 IGEYNFRLVEGANEMIQLEALLAQFT 862
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 27/49 (55%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTST 90
PWVEKYRPQ L D+ IV + +PHLL GPPG GK T
Sbjct: 14 PWVEKYRPQRLDDIVGQEHIVKRLKHYAKTGSMPHLLFAGPPGVGKCLT 62
>gi|224074887|ref|XP_002304476.1| predicted protein [Populus trichocarpa]
gi|222841908|gb|EEE79455.1| predicted protein [Populus trichocarpa]
Length = 330
Score = 215 bits (547), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 123/325 (37%), Positives = 181/325 (55%), Gaps = 11/325 (3%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP +AD+ ++D V + + + +P+L+L GPPGTGKT++ILA+A +L G
Sbjct: 13 PWVEKYRPNKVADIVGNQDAVSRLQVIARDGNMPNLILAGPPGTGKTTSILALAHELLGP 72
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQ-SFSFGVKASVKLVLLDEADAMTKDAQFA 160
+LELNASDDRGIDVVR +I+ FA + + G K+V+LDEAD+MT AQ A
Sbjct: 73 NSKEAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGQH---KIVILDEADSMTSGAQQA 129
Query: 161 LRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDV 220
LRR +E Y+ +TRFAL CN +KII +QSRC RF+ L + RL V+ AE +
Sbjct: 130 LRRTMEIYSNSTRFALACNTSSKIIEPIQSRCAIVRFSRLSDQEILGRLMVVVGAEQVPY 189
Query: 221 TEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNE 280
GL A++ +GDMR+ALN LQ+TH + +E V+ P P ++ + +L
Sbjct: 190 VPEGLEAIIFTADGDMRQALNNLQATHSGFHFVNQENVFKVCDQPHPLHVKNMVRQVLEG 249
Query: 281 SFADS---FKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSF 337
F D+ K + +M G + DI+ + + M +++ M + R+
Sbjct: 250 KFDDACSGLKHLYDM----GYSPTDIITTLFRIIKNYDMAEYMKLEFMKETGFAHMRICD 305
Query: 338 GCNDKLQLGSIISTFTQARSAIVAA 362
G LQL +++ R AA
Sbjct: 306 GVGSYLQLCGLLAKLALVRDTARAA 330
>gi|157786766|ref|NP_001099339.1| replication factor C subunit 4 [Rattus norvegicus]
gi|149019930|gb|EDL78078.1| replication factor C (activator 1) 4 (predicted), isoform CRA_a
[Rattus norvegicus]
gi|195540022|gb|AAI68166.1| Rfc4 protein [Rattus norvegicus]
Length = 364
Score = 215 bits (547), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 129/325 (39%), Positives = 197/325 (60%), Gaps = 9/325 (2%)
Query: 38 IKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARK 97
+K PWVEKYRP+ + +VA ++V + + LP+LL YGPPGTGKTSTILA AR+
Sbjct: 35 VKPVPWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARE 94
Query: 98 LYGAQYHNM-ILELNASDDRGIDVVRQQIQDFAS---TQSFSFGVKAS-VKLVLLDEADA 152
L+G + + +LELNASD+RGI VVR+++++FA + S S G K+V+LDEAD+
Sbjct: 95 LFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPPFKIVILDEADS 154
Query: 153 MTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHV 212
MT AQ ALRR +EK +K TRF LICN V++II L SRC++FRF PL +RL +
Sbjct: 155 MTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQKRLLDI 214
Query: 213 IEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTH--MASQQITEEAVYLCTGNPLPKDI 270
E E + + + +A LVR+ GD+RKA+ LQS ++I+E+ + G I
Sbjct: 215 AEKENVKIGDEEIAYLVRISEGDLRKAITFLQSATRLTGGKEISEDVITDIAGVIPAATI 274
Query: 271 EQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMND-LA 329
E I + SF D + + + + +G A +V ++ + + + SD + ++ + LA
Sbjct: 275 EGIVTACHSGSF-DKLEAVLKNLIDEGHAATQLVNQLHDSIIEDENLSDKQKSIITEKLA 333
Query: 330 DIEYRLSFGCNDKLQLGSIISTFTQ 354
+++ L+ G ++ LQL S+ +T Q
Sbjct: 334 EVDKCLADGADEHLQLMSLCATVMQ 358
>gi|389631703|ref|XP_003713504.1| replication factor C subunit 2 [Magnaporthe oryzae 70-15]
gi|351645837|gb|EHA53697.1| replication factor C subunit 2 [Magnaporthe oryzae 70-15]
Length = 384
Score = 215 bits (547), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 104/219 (47%), Positives = 150/219 (68%), Gaps = 8/219 (3%)
Query: 35 PPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAV 94
P + + PWVEKYRP++L+DV A V + R + LPH+L YGPPGTGKTST+LA+
Sbjct: 28 PENTRTQPWVEKYRPKTLSDVTAQDHTVTVLQRTLQASNLPHMLFYGPPGTGKTSTVLAL 87
Query: 95 ARKLYGAQ-YHNMILELNASDDRGIDVVRQQIQDFASTQ--SFSFGVKAS-----VKLVL 146
A++L+G + + +LELNASD+RGI +VR++++DFA Q + G K+ K+++
Sbjct: 88 AKELFGPELMKSRVLELNASDERGISIVREKVKDFARMQLTNPPPGYKSKYPCPPFKIII 147
Query: 147 LDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVT 206
LDEAD+MT+DAQ ALRR +E Y+K TRF LICN V +II L SRC++FRF L+ +
Sbjct: 148 LDEADSMTQDAQSALRRTMETYSKITRFCLICNYVTRIIDPLASRCSKFRFKSLDQENAR 207
Query: 207 ERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQS 245
RL+ + EG+ + +G + AL++ GD+RKA+ LQS
Sbjct: 208 SRLEDIAAKEGVALEDGAVDALIKCSEGDLRKAITFLQS 246
>gi|126338206|ref|XP_001370165.1| PREDICTED: replication factor C subunit 4 [Monodelphis domestica]
Length = 366
Score = 215 bits (547), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 128/324 (39%), Positives = 194/324 (59%), Gaps = 9/324 (2%)
Query: 39 KASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKL 98
K PWVEKYRP+ + +VA ++V + + LP+LL YGPPGTGKTSTILA AR+L
Sbjct: 37 KPVPWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAAREL 96
Query: 99 YGAQ-YHNMILELNASDDRGIDVVRQQIQDFAS---TQSFSFGVKAS-VKLVLLDEADAM 153
YG + + +LELNASD+RGI V+R++++ FA + S S G K+V+LDEAD+M
Sbjct: 97 YGPELFRQRVLELNASDERGIQVIREKVKTFAQLTVSGSRSDGKPCPPFKIVILDEADSM 156
Query: 154 TKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVI 213
T AQ ALRR +EK +K TRF LICN V++II L SRC++FRF PL +RL +
Sbjct: 157 TSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQHQRLLDIS 216
Query: 214 EAEGLDVTEGGLAALVRLCNGDMRKALNILQSTH--MASQQITEEAVYLCTGNPLPKDIE 271
E E + + G+A LV++ GD+RKA+ LQS Q++TE+ + G I
Sbjct: 217 EKENVKINNEGIAYLVKVSEGDLRKAITFLQSATRLTGGQEVTEKVITEIAGVVPTGTIT 276
Query: 272 QISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMND-LAD 330
I Y + SF + + + + + +G A ++ ++ V + +D + ++ + LA+
Sbjct: 277 GIFYACQSGSF-EKLEALVKDLIDEGHAATQLINQLHDVVVEKDDLTDKQKSIITEKLAE 335
Query: 331 IEYRLSFGCNDKLQLGSIISTFTQ 354
++ L+ G ++ LQL S+ +T Q
Sbjct: 336 VDKCLADGADEHLQLISLCATVMQ 359
>gi|294920987|ref|XP_002778643.1| Replication factor C subunit, putative [Perkinsus marinus ATCC
50983]
gi|239887323|gb|EER10438.1| Replication factor C subunit, putative [Perkinsus marinus ATCC
50983]
Length = 277
Score = 215 bits (547), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 104/212 (49%), Positives = 145/212 (68%), Gaps = 6/212 (2%)
Query: 39 KASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKL 98
+A PWVEKYRP + ++A ++V + LPHLL YGPPG GKTS ILA+AR+L
Sbjct: 21 RAVPWVEKYRPARVEELAHQPEVVGALKEAVGTGNLPHLLFYGPPGNGKTSAILALAREL 80
Query: 99 YGAQ-YHNMILELNASDDRGIDVVRQQIQDFA--STQSFSFGVKASV---KLVLLDEADA 152
+G + + + +LELNASD+RGIDV+R +++ FA S ++ + G S K+++LDEAD+
Sbjct: 81 FGPELWRDRVLELNASDERGIDVIRDKVKKFAQISVRAVAPGSGKSAPPFKIIVLDEADS 140
Query: 153 MTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHV 212
MTKDAQ ALRR+IE YT+ TRF +ICN V++II LQSRC +FRF PL RL+++
Sbjct: 141 MTKDAQAALRRIIENYTQVTRFCIICNYVSRIIEPLQSRCAKFRFEPLSDESQRGRLEYI 200
Query: 213 IEAEGLDVTEGGLAALVRLCNGDMRKALNILQ 244
EG+ + G + AL+ NGD+R A+N LQ
Sbjct: 201 ANCEGVKMANGAMEALLGTSNGDLRSAINTLQ 232
>gi|395843019|ref|XP_003794301.1| PREDICTED: replication factor C subunit 2 [Otolemur garnettii]
Length = 352
Score = 215 bits (547), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 118/321 (36%), Positives = 185/321 (57%), Gaps = 3/321 (0%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP L +V + D V ++ E +P++++ GPPGTGKT++IL +AR L G
Sbjct: 35 PWVEKYRPIKLNEVVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGP 94
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFAL 161
+ +LELNAS+DRGIDVVR +I+ FA Q + K K+++LDEAD+MT AQ AL
Sbjct: 95 AMKDAVLELNASNDRGIDVVRNKIKMFAQ-QKVTLP-KGRHKIIILDEADSMTDGAQQAL 152
Query: 162 RRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVT 221
RR +E Y+K TRFAL CN +KII +QSRC R+ L + RL +VIE E + T
Sbjct: 153 RRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQILARLLNVIEKEKVPYT 212
Query: 222 EGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNES 281
+ GL A++ GDMR+ALN LQST I E V+ P P ++++ ++ +
Sbjct: 213 DDGLEAIIFTAQGDMRQALNNLQSTFSGFGFINSENVFKVCDEPHPLLVKEMIQHCVDAN 272
Query: 282 FADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCND 341
+++K ++ + G + D++ + +M +++ + ++ +++ G N
Sbjct: 273 IDEAYKILAHL-WHLGYSPEDVIGNIFRVCKTFQMAEYLKLEFIKEIGYTHMKVAEGVNS 331
Query: 342 KLQLGSIISTFTQARSAIVAA 362
LQ+ +++ Q A VA+
Sbjct: 332 LLQMAGLLARLCQKTMAPVAS 352
>gi|61367093|gb|AAX42951.1| replication factor C 4 [synthetic construct]
Length = 364
Score = 215 bits (547), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 128/333 (38%), Positives = 197/333 (59%), Gaps = 8/333 (2%)
Query: 32 SGTPPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTI 91
SG K PWVEKYRP+ + +VA ++V + + LP+LL YGPPGTGKTSTI
Sbjct: 29 SGENKKAKPVPWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTI 88
Query: 92 LAVARKLYGAQYHNM-ILELNASDDRGIDVVRQQIQDFAS---TQSFSFGVKAS-VKLVL 146
LA AR+L+G + + +LELNASD+RGI VVR+++++FA + S S G K+V+
Sbjct: 89 LAAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPPFKIVI 148
Query: 147 LDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVT 206
LDEAD+MT AQ ALRR +EK +K TRF LICN V++II L SRC++F F PL
Sbjct: 149 LDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFSFKPLSDKIQQ 208
Query: 207 ERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTH--MASQQITEEAVYLCTGN 264
+RL + + E + +++ G+A LV++ GD+RKA+ LQS ++ITE+ + G
Sbjct: 209 QRLLDIAKKENVKISDEGIAYLVKVSEGDLRKAITFLQSATRLTGGKEITEKVITDIAGV 268
Query: 265 PLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRL 324
+ I+ + + SF D + + + + +G A +V ++ V + + + +
Sbjct: 269 IPAEKIDGVFAACQSGSF-DKLEAVVKDLIDEGHAATQLVNQLHDVVVENNLSDKQKSII 327
Query: 325 MNDLADIEYRLSFGCNDKLQLGSIISTFTQARS 357
LA+++ L+ G ++ LQL S+ +T Q S
Sbjct: 328 TEKLAEVDKCLADGADEHLQLISLCATVMQQLS 360
>gi|366997707|ref|XP_003683590.1| hypothetical protein TPHA_0A00710 [Tetrapisispora phaffii CBS 4417]
gi|357521885|emb|CCE61156.1| hypothetical protein TPHA_0A00710 [Tetrapisispora phaffii CBS 4417]
Length = 325
Score = 215 bits (547), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 120/318 (37%), Positives = 181/318 (56%), Gaps = 10/318 (3%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP L D+ + D ++ + + + +PH+++ G PG GKT++I +A +L G
Sbjct: 11 PWVEKYRPHLLKDIVGNEDTIERLKHIAKDGNMPHMIISGLPGIGKTTSIHCLAHELLGD 70
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFAL 161
Y +LELNASDDRGIDVVR QI+ FA + K K+++LDEAD+MT AQ AL
Sbjct: 71 SYSQAVLELNASDDRGIDVVRNQIKHFAQKKCHLPTGKH--KIIILDEADSMTAGAQQAL 128
Query: 162 RRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVT 221
RR +E Y+ TRFA CNQ NKII LQSRC R+ L V +RL + +AE + T
Sbjct: 129 RRTMEIYSNTTRFAFACNQSNKIIEPLQSRCAILRYTKLSDEQVLKRLLEITKAEDVKYT 188
Query: 222 EGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNES 281
GL AL+ GDMR+A+N LQST + + V+ +P P ++++ +L +
Sbjct: 189 NDGLEALIFTAEGDMRQAINNLQSTVAGHSLVNGDNVFKIVDSPHPLIVKKM---ILAPT 245
Query: 282 FADSFKRISEMKMRKGLALVDIVR---EVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFG 338
DS + + KG + VDIV VT ++++K P R+ ++ ++ R+ G
Sbjct: 246 LDDSLLILRKELWDKGYSAVDIVTTSFRVTKTLYELKEPQ--RLDMIKEIGITHMRILEG 303
Query: 339 CNDKLQLGSIISTFTQAR 356
LQL ++++ + +
Sbjct: 304 VGTYLQLAAMMAKLSTHK 321
>gi|410970795|ref|XP_003991862.1| PREDICTED: replication factor C subunit 4 [Felis catus]
Length = 362
Score = 215 bits (547), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 130/331 (39%), Positives = 199/331 (60%), Gaps = 9/331 (2%)
Query: 32 SGTPPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTI 91
SG K PWVEKYRP+ + +VA ++V + + LP+LL YGPPGTGKTSTI
Sbjct: 27 SGENKKAKPVPWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTI 86
Query: 92 LAVARKLYGAQYHNM-ILELNASDDRGIDVVRQQIQDFAS---TQSFSFGVKAS-VKLVL 146
LA AR+L+G + + +LELNASD+RGI VVR+++++FA + S S G K+V+
Sbjct: 87 LAAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPPFKIVI 146
Query: 147 LDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVT 206
LDEAD+MT AQ ALRR +EK +K TRF LICN V++II L SRC++FRF PL
Sbjct: 147 LDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQ 206
Query: 207 ERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTH--MASQQITEEAVYLCTGN 264
+RL + + E + ++ G+A LV++ GD+RKA+ LQS ++ITE+ + G
Sbjct: 207 QRLLDIADKEHVKISNEGIAYLVKVSEGDLRKAITFLQSATRLTGGKEITEKVITDIAGV 266
Query: 265 PLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRL 324
+ I+ + + SF D + + + + +G A +V ++ V + SD + +
Sbjct: 267 IPAETIDGLFAACQSGSF-DKLEGVVKNLIDEGHAATQLVNQLHDVVVENDNLSDKQKSI 325
Query: 325 MND-LADIEYRLSFGCNDKLQLGSIISTFTQ 354
+ + LA+++ L+ G ++ LQL S+ +T Q
Sbjct: 326 ITEKLAEVDKCLADGADEHLQLISLCATVMQ 356
>gi|47214930|emb|CAG01152.1| unnamed protein product [Tetraodon nigroviridis]
Length = 357
Score = 214 bits (546), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 131/339 (38%), Positives = 197/339 (58%), Gaps = 20/339 (5%)
Query: 32 SGTPPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTI 91
S + KA PWVEKYRP+ + +VA ++V + + LP+LL YGPPGTGKTSTI
Sbjct: 24 SSSEKKAKAVPWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTI 83
Query: 92 LAVARKLYG-AQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKAS------VKL 144
LA AR+LYG Y +LELNASD+RGI V+R++++ FA Q G + K+
Sbjct: 84 LAAARELYGPVLYRQRVLELNASDERGIQVIREKVKTFA--QLTVAGTRPDGKPCPPFKI 141
Query: 145 VLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVH 204
++LDEAD+MT AQ ALRR +EK ++ TRF LICN +++II L SRC++FRF PL+
Sbjct: 142 IILDEADSMTPPAQAALRRTMEKESRTTRFCLICNYISRIIEPLTSRCSKFRFKPLDNQV 201
Query: 205 VTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMAS--QQITEEAVYLCT 262
ERL + E E L + ++ALVR+ GD+RKA+ LQS S ++I+E +
Sbjct: 202 QEERLLAICEKENLKYSGESVSALVRVSEGDLRKAITFLQSAARLSVDKEISERTITEIA 261
Query: 263 GNPLPKDIEQISYWLLNESFADSFKRISEMKMR----KGLALVDIVREVTMFVFKIKMPS 318
G K I+ LL+ F +F+++ E+++R +G A I+ ++ + + +
Sbjct: 262 GVVPHKMIDS----LLHICFRGTFEKL-EVEVRNLVDEGYAATQILSQLHESIIEKDLGD 316
Query: 319 DVRVRLMNDLADIEYRLSFGCNDKLQLGSIISTFTQARS 357
+ + +A + LS G ++ LQ+ S+ S Q S
Sbjct: 317 KQKSAITEKMAVVSKCLSDGADEYLQMLSLCSVIMQQSS 355
>gi|190346599|gb|EDK38722.2| conserved hypothetical protein [Meyerozyma guilliermondii ATCC
6260]
Length = 256
Score = 214 bits (546), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 113/255 (44%), Positives = 165/255 (64%), Gaps = 9/255 (3%)
Query: 106 MILELNASDDRGIDVVRQQIQDFAST-QSFSFGVKASVKLVLLDEADAMTKDAQFALRRV 164
M+LELNASDDRGIDVVR +I++FAST Q FS G K L++LDEAD+MT AQ +LRR+
Sbjct: 1 MVLELNASDDRGIDVVRNEIKNFASTMQIFSRGFK----LIILDEADSMTAVAQNSLRRI 56
Query: 165 IEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGG 224
IEKYTKNTRF ++ N +K+ PAL SRCTRFRF P+ + E L+ VI E L +
Sbjct: 57 IEKYTKNTRFCILANYSHKLNPALISRCTRFRFHPISESAIKENLQPVIVKEHLSIQPSA 116
Query: 225 LAALVRLCNGDMRKALNILQSTHMA----SQQITEEAVYLCTGNPLPKDIEQISYWLLNE 280
+ AL+RL GDMRKALN+LQ+ + +I E +Y C G P P+DIE +L +
Sbjct: 117 VDALLRLSKGDMRKALNVLQACKASLSKDGDEIDETMIYDCLGAPQPQDIEGALDSILKD 176
Query: 281 SFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCN 340
+ ++ I ++K +KGLAL+D++ + + ++ R+ ++ L+++EY ++ G N
Sbjct: 177 EWTTAYLTIEKLKKQKGLALIDLISGIVEILNNYELKPATRIDILKGLSEVEYGIARGGN 236
Query: 341 DKLQLGSIISTFTQA 355
DK+Q +I+ +A
Sbjct: 237 DKIQSSAIVGVIKEA 251
>gi|402078075|gb|EJT73424.1| replication factor C subunit 2 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 384
Score = 214 bits (546), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 106/220 (48%), Positives = 149/220 (67%), Gaps = 9/220 (4%)
Query: 35 PPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAV 94
P +A PWVEKYRP++L+DV A V + R + LPH+L YGPPGTGKTST+LA+
Sbjct: 28 PEATRAQPWVEKYRPKTLSDVTAQDHTVTVLQRTLQASNLPHMLFYGPPGTGKTSTVLAL 87
Query: 95 ARKLYGAQ-YHNMILELNASDDRGIDVVRQQIQDFASTQ--SFSFGVKAS------VKLV 145
A++L+G + + +LELNASD+RGI +VR++++DFA Q + G S K++
Sbjct: 88 AKELFGPELMRSRVLELNASDERGISIVREKVKDFARMQLTNPPPGYDRSKYPCPPFKII 147
Query: 146 LLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHV 205
+LDEAD+MT+DAQ ALRR +E Y+K TRF LICN V +II L SRC++FRF L+ +
Sbjct: 148 ILDEADSMTQDAQSALRRTMETYSKITRFCLICNYVTRIIDPLASRCSKFRFKSLDQGNA 207
Query: 206 TERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQS 245
RL+H+ E E + + G + AL++ GD+RKA+ LQS
Sbjct: 208 KARLEHIAEKECVALEPGAVDALIKSSEGDLRKAITFLQS 247
>gi|417399418|gb|JAA46724.1| Putative replication factor c subunit 2 [Desmodus rotundus]
Length = 350
Score = 214 bits (546), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 118/321 (36%), Positives = 183/321 (57%), Gaps = 3/321 (0%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP L ++ + D V ++ E +P++++ GPPGTGKT++IL +AR L G+
Sbjct: 33 PWVEKYRPVKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGS 92
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFAL 161
+ +LELNAS+DRGIDVVR +I+ FA Q + + K+++LDEAD+MT AQ AL
Sbjct: 93 ALKDAVLELNASNDRGIDVVRNKIKMFAQ-QKVTLP-RGRHKIIILDEADSMTDGAQQAL 150
Query: 162 RRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVT 221
RR +E Y+K TRFAL CN +KII +QSRC R+ L + RL VIE E + T
Sbjct: 151 RRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQILARLLTVIEKEKVQHT 210
Query: 222 EGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNES 281
+ GL A++ GDMR+ALN LQST I E V+ P P ++++ +N
Sbjct: 211 DDGLEAIIFTAQGDMRQALNNLQSTFSGFGFINSENVFKVCDEPHPLLVKEMIQHCVNAD 270
Query: 282 FADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCND 341
++K ++ + G + DI+ + +M +++ + ++ +++ G N
Sbjct: 271 IDGAYKILAHL-WHLGYSPEDIIGNIFRVCKTFQMAEYLKLEFIKEIGYTHMKIAEGVNS 329
Query: 342 KLQLGSIISTFTQARSAIVAA 362
LQ+ +++ Q A VA+
Sbjct: 330 LLQMSGLLARLCQKTMAPVAS 350
>gi|410077369|ref|XP_003956266.1| hypothetical protein KAFR_0C01380 [Kazachstania africana CBS 2517]
gi|372462850|emb|CCF57131.1| hypothetical protein KAFR_0C01380 [Kazachstania africana CBS 2517]
Length = 321
Score = 214 bits (546), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 119/312 (38%), Positives = 180/312 (57%), Gaps = 10/312 (3%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRPQ L D+ + + ++ + ++ + +PH+++ G PG GKT+++ +A +L G+
Sbjct: 11 PWVEKYRPQLLKDIVGNEETIERLKQIAQDGNMPHMIISGLPGIGKTTSVHCLAHELLGS 70
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFAL 161
Y +LELNASDDRGIDV+R QI+ FA + + V K+++LDEAD+MT AQ AL
Sbjct: 71 HYSQAVLELNASDDRGIDVIRNQIKHFAQ-KKLNLPV-GKHKIIILDEADSMTAGAQQAL 128
Query: 162 RRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVT 221
RR +E Y+ TRFA CNQ NKII LQSRC R++ L V +RL VIE E ++ T
Sbjct: 129 RRTMELYSNTTRFAFACNQSNKIIEPLQSRCAILRYSKLSDEQVLKRLLEVIELEKVEYT 188
Query: 222 EGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNES 281
GL A++ GDMR+A+N LQST + + V+ +P P + ++ LL+ +
Sbjct: 189 NDGLEAIIFTAEGDMRQAINNLQSTVAGHGLVNGDNVFKIVDSPHPLIVRKM---LLSTT 245
Query: 282 FADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPS---DVRVRLMNDLADIEYRLSFG 338
+S + KG + VDIV T F +P R+ ++ ++ R+ G
Sbjct: 246 LDESMNILRNELWNKGYSSVDIV--TTCFRVTKTLPQVKEAKRLEMIKEIGFTHMRILEG 303
Query: 339 CNDKLQLGSIIS 350
LQL S+++
Sbjct: 304 VGTYLQLASMLA 315
>gi|448102295|ref|XP_004199768.1| Piso0_002311 [Millerozyma farinosa CBS 7064]
gi|359381190|emb|CCE81649.1| Piso0_002311 [Millerozyma farinosa CBS 7064]
Length = 360
Score = 214 bits (546), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 109/240 (45%), Positives = 156/240 (65%), Gaps = 13/240 (5%)
Query: 38 IKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARK 97
I+ +PWVEKYRP++L +VA+ V + + LPH+L YGPPGTGKTSTILA+AR+
Sbjct: 15 IEHTPWVEKYRPKNLDEVASQEHTVKILKKTLESANLPHMLFYGPPGTGKTSTILALARQ 74
Query: 98 LYGAQ-YHNMILELNASDDRGIDVVRQQIQDFA-------STQSFSFGVKASVKLVLLDE 149
LYG + + + +LELNASDDRGI +VRQ++++FA S + KL++LDE
Sbjct: 75 LYGPRLFKSRVLELNASDDRGISIVRQKVKNFARLAVSNASKEDLENYPCPPYKLIILDE 134
Query: 150 ADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERL 209
AD+MT DAQ ALRR IE Y+ TRF LICN + +II L SRC++FRF L + +R+
Sbjct: 135 ADSMTNDAQSALRRTIENYSGVTRFCLICNYITRIIDPLSSRCSKFRFGLLNNDNALQRI 194
Query: 210 KHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTH-----MASQQITEEAVYLCTGN 264
++++E E L+V E L+ + NGD+RKA+ LQS +A+ E+ +++ GN
Sbjct: 195 RYIVEKENLNVDEDVPETLLSMSNGDLRKAITFLQSASRLSFALANPDDNEDRMHVDEGN 254
>gi|393245398|gb|EJD52908.1| P-loop containing nucleoside triphosphate hydrolase protein
[Auricularia delicata TFB-10046 SS5]
Length = 376
Score = 214 bits (546), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 114/286 (39%), Positives = 175/286 (61%), Gaps = 30/286 (10%)
Query: 23 KDNGKNVIVSGTPPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGP 82
KD K+ + D + PWVEKYRP+++ DV A V + + + LPH+L YGP
Sbjct: 11 KDAAKHTV------DPQLQPWVEKYRPKTIEDVTAQEHTVAVLRKTLTSTNLPHMLFYGP 64
Query: 83 PGTGKTSTILAVARKLYGA-QYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKAS 141
PGTGKTSTILA+AR+LYG + +LELNASD+RGI +VR++I+DFA Q+ V +S
Sbjct: 65 PGTGKTSTILALARQLYGPDNFRTRVLELNASDERGITIVREKIKDFAR-QTPRANVASS 123
Query: 142 ---------VKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRC 192
K+++LDEAD+MT+DAQ ALRR++E Y + TRF L+CN V +II L SRC
Sbjct: 124 DGQTYPCPPYKIIILDEADSMTQDAQAALRRIMENYARITRFCLVCNYVTRIIEPLASRC 183
Query: 193 TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQ 252
++FRF PL+ RL+++ + EG+++++ + +L+ GD+R+++ LQ+
Sbjct: 184 SKFRFKPLDNSSTHGRLEYIAQQEGVNISQDTIKSLIACSGGDLRRSITYLQT------- 236
Query: 253 ITEEAVYLCTGNPL-PKDIEQISYWLLNESFADSFKRISEMKMRKG 297
A L P+ P+DI++I+ ++ + + F R + R G
Sbjct: 237 ----ASRLANAQPISPRDIQEIA-GVVPDVVVNDFARTLGVDTRYG 277
>gi|327289387|ref|XP_003229406.1| PREDICTED: replication factor C subunit 2-like [Anolis
carolinensis]
Length = 329
Score = 214 bits (546), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 118/325 (36%), Positives = 189/325 (58%), Gaps = 6/325 (1%)
Query: 37 DIKAS---PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILA 93
DIK S P VEKYRP L+++ + D V ++ E +P++++ GPPGTGKT++IL
Sbjct: 4 DIKDSFITPLVEKYRPLKLSEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTTSILC 63
Query: 94 VARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAM 153
+AR L G + +LELNAS+DRGIDVVR +I+ FA Q + K K+++LDEAD+M
Sbjct: 64 LARALLGPALKDAVLELNASNDRGIDVVRNKIKMFAQ-QKVTLP-KGRHKIIILDEADSM 121
Query: 154 TKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVI 213
T AQ ALRR +E Y+K TRFAL CN +KII +QSRC R++ L V RL ++
Sbjct: 122 TDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYSKLTDGQVLARLMKIV 181
Query: 214 EAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQI 273
E E + T+ GL A++ GDMR+ALN LQSTH + E V+ P P ++++
Sbjct: 182 EKENVQYTDDGLEAIIFTAQGDMRQALNNLQSTHSGFGFVNSENVFKVCDEPHPLLVKEM 241
Query: 274 SYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEY 333
++ + +++K ++ + + G + DI+ + +M +++ + ++
Sbjct: 242 LGHCVSANIDEAYKILAHL-WKLGYSPEDIIGNIFRVCKTFQMAEYLKLEFIKEIGYTHM 300
Query: 334 RLSFGCNDKLQLGSIISTFTQARSA 358
+++ G N LQ+ +++ Q +A
Sbjct: 301 KIAEGVNSLLQMAGLLARLCQKTAA 325
>gi|301758022|ref|XP_002914857.1| PREDICTED: replication factor C subunit 4-like [Ailuropoda
melanoleuca]
gi|281350719|gb|EFB26303.1| hypothetical protein PANDA_002794 [Ailuropoda melanoleuca]
Length = 363
Score = 214 bits (546), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 130/331 (39%), Positives = 198/331 (59%), Gaps = 9/331 (2%)
Query: 32 SGTPPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTI 91
SG K PWVEKYRP+ + ++A ++V + + LP+LL YGPPGTGKTSTI
Sbjct: 28 SGENKKTKPVPWVEKYRPKCVDEIAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTI 87
Query: 92 LAVARKLYGAQYHNM-ILELNASDDRGIDVVRQQIQDFAS---TQSFSFGVKAS-VKLVL 146
LA AR+L+G + + +LELNASD+RGI VVR+++++FA + S S G K+V+
Sbjct: 88 LAAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPPFKIVI 147
Query: 147 LDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVT 206
LDEAD+MT AQ ALRR +EK +K TRF LICN V++II L SRC++FRF PL
Sbjct: 148 LDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQ 207
Query: 207 ERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTH--MASQQITEEAVYLCTGN 264
+RL + + E + ++ G+A LV++ GD+RKA+ LQS ++ITE+ + G
Sbjct: 208 QRLLDIADKEHVKISNEGIAYLVKVSEGDLRKAITFLQSATRLTGGKEITEKVITDIAGV 267
Query: 265 PLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRL 324
+ I+ I + SF D + + + + +G A +V + V + SD + +
Sbjct: 268 IPAQTIDGIFAACQSGSF-DKLEAVVKDLIDEGHAATQLVNQFHDVVVENDNLSDKQKSI 326
Query: 325 MND-LADIEYRLSFGCNDKLQLGSIISTFTQ 354
+ + LA+++ L+ G ++ LQL S+ +T Q
Sbjct: 327 ITEKLAEVDKCLADGADEHLQLISLCATVMQ 357
>gi|336377010|gb|EGO05345.1| hypothetical protein SERLA73DRAFT_174456 [Serpula lacrymans var.
lacrymans S7.3]
gi|336390053|gb|EGO31196.1| hypothetical protein SERLADRAFT_455984 [Serpula lacrymans var.
lacrymans S7.9]
Length = 343
Score = 214 bits (546), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 121/316 (38%), Positives = 182/316 (57%), Gaps = 8/316 (2%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRPQ+L DV + D ++ + + + PH+++ G PG GKT++I +A +L G
Sbjct: 23 PWVEKYRPQNLDDVVGNVDTIERLKVIAKDGNCPHIIISGLPGIGKTTSIHCLAHQLLGD 82
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFAL 161
Y +LELNASD+RGIDVVR +I+ FA Q A K+V+LDEAD+MT AQ AL
Sbjct: 83 AYKEGVLELNASDERGIDVVRNKIKAFA--QKKVTLPPARHKIVILDEADSMTPGAQQAL 140
Query: 162 RRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVT 221
RR +E ++ TRF L CN NKII +QSRC R+A L + +RL + E E ++
Sbjct: 141 RRTMEIFSNTTRFCLACNMSNKIIEPIQSRCAILRYAKLRDTEILKRLLEICEMEKVEYN 200
Query: 222 EGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNES 281
+ GL AL+ C GDMR+A+N LQSTH ++ E V+ P P ++ I L
Sbjct: 201 DDGLTALIFTCEGDMRQAINNLQSTHSGFGFVSGENVFKVCDQPHPVIVQSIIRACLKGD 260
Query: 282 FADSFKRISEMKMRKGLALVDIVREVTMF-VFKI--KMPSDVRVRLMNDLADIEYRLSFG 338
+ +++E+ +G + VDIV VT+F V K ++P ++ + ++ R+ G
Sbjct: 261 IDGAMGKLNEL-WEQGYSAVDIV--VTVFRVVKTFDELPEYTKLEYIKEIGFTHMRILEG 317
Query: 339 CNDKLQLGSIISTFTQ 354
+QLG +++ +
Sbjct: 318 VGTIIQLGGLVARLCK 333
>gi|347829788|emb|CCD45485.1| similar to replication factor C subunit [Botryotinia fuckeliana]
Length = 379
Score = 214 bits (546), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 103/224 (45%), Positives = 150/224 (66%), Gaps = 8/224 (3%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP+ L DV A + + R + LPH+L YGPPGTGKTST+LA+A++LYG
Sbjct: 34 PWVEKYRPKGLGDVTAQDHTITVLQRTLQSSNLPHMLFYGPPGTGKTSTVLALAKELYGP 93
Query: 102 Q-YHNMILELNASDDRGIDVVRQQIQDFASTQ----SFSFGVK---ASVKLVLLDEADAM 153
+ + +LELNASD+RGI +VR++++DFA Q S ++ K K+++LDEAD+M
Sbjct: 94 ELMKSRVLELNASDERGISIVREKVKDFARMQLSNPSPAYRQKYPCPPYKIIILDEADSM 153
Query: 154 TKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVI 213
T+DAQ ALRR +E Y++ TRF LICN V +II L SRC++FRF L+ + R++ +
Sbjct: 154 TQDAQSALRRTMETYSRITRFCLICNYVTRIIDPLASRCSKFRFKSLDKGNAVVRVREIA 213
Query: 214 EAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEA 257
+ EG+ + EG + AL++ GD+RKA+ LQS +++E
Sbjct: 214 DKEGVRLEEGAVEALIKCSEGDLRKAITYLQSAARLVGAVSQEG 257
>gi|449460473|ref|XP_004147970.1| PREDICTED: replication factor C subunit 2-like [Cucumis sativus]
gi|449494241|ref|XP_004159490.1| PREDICTED: replication factor C subunit 2-like [Cucumis sativus]
Length = 331
Score = 214 bits (546), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 119/316 (37%), Positives = 179/316 (56%), Gaps = 5/316 (1%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP + D+ + D V + + + +P+L+L GPPGTGKT++ILA+A +L G
Sbjct: 14 PWVEKYRPNKVTDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGP 73
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQ-SFSFGVKASVKLVLLDEADAMTKDAQFA 160
Y +LELNASDDRGIDVVR +I+ FA + + G K+V+LDEAD+MT AQ A
Sbjct: 74 NYKEGVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRH---KVVILDEADSMTTGAQQA 130
Query: 161 LRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDV 220
LRR +E Y+ TRFAL CN +KII +QSRC RF+ L + RL VI+AE +
Sbjct: 131 LRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGRLMVVIQAEKVPY 190
Query: 221 TEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNE 280
GL A++ +GDMR+ALN LQ+TH + + ++ V+ P P ++ + +L
Sbjct: 191 VPEGLEAIIFTADGDMRQALNNLQATHSGFRFVNQDNVFKVCDQPHPLHVKNVVRNVLEG 250
Query: 281 SFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCN 340
F D+ + ++ G + DI+ + + M +++ M + R+ G
Sbjct: 251 KFDDACTGLRQL-YDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAHMRICDGVG 309
Query: 341 DKLQLGSIISTFTQAR 356
LQL +++ + R
Sbjct: 310 SYLQLCGLLAKLSMVR 325
>gi|213983145|ref|NP_001135488.1| replication factor C (activator 1) 2, 40kDa [Xenopus (Silurana)
tropicalis]
gi|195539917|gb|AAI67884.1| Unknown (protein for MGC:135299) [Xenopus (Silurana) tropicalis]
Length = 345
Score = 214 bits (545), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 114/306 (37%), Positives = 178/306 (58%), Gaps = 3/306 (0%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP L+++ + + V ++ E +P++++ GPPGTGKT++IL +AR L G
Sbjct: 32 PWVEKYRPLKLSEIVGNEETVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGP 91
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFAL 161
+ +LELNAS+DRGIDVVR +I+ FA Q + K K+++LDEAD+MT AQ AL
Sbjct: 92 TMKDAVLELNASNDRGIDVVRNKIKMFAQ-QKVTLP-KGRHKIIILDEADSMTDGAQQAL 149
Query: 162 RRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVT 221
RR +E Y+K TRFAL CN +KII +QSRC R+ L V RL V+E E + T
Sbjct: 150 RRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQVLARLMDVVEKERVQCT 209
Query: 222 EGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNES 281
+ GL A+V GDMR+ALN LQST + V+ P P ++++ +N +
Sbjct: 210 DDGLEAIVFTAQGDMRQALNNLQSTFAGFGFVNSTNVFKVCDEPHPLLVKEMLQHCVNAN 269
Query: 282 FADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCND 341
+++K ++ + + G + DI+ + +MP +++ + ++ +++ G N
Sbjct: 270 IDEAYKVVAHL-WKLGYSPEDIIGNIFRVCKTFQMPEYLKLEFIKEIGYTHMKIAEGVNS 328
Query: 342 KLQLGS 347
LQ+
Sbjct: 329 LLQMAG 334
>gi|145592047|ref|YP_001154049.1| replication factor C small subunit [Pyrobaculum arsenaticum DSM
13514]
gi|158514167|sp|A4WLY0.1|RFCS2_PYRAR RecName: Full=Replication factor C small subunit 2; Short=RFC small
subunit 2; AltName: Full=Clamp loader small subunit 2
gi|145283815|gb|ABP51397.1| replication factor C small subunit [Pyrobaculum arsenaticum DSM
13514]
Length = 322
Score = 214 bits (545), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 114/307 (37%), Positives = 178/307 (57%), Gaps = 11/307 (3%)
Query: 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 102
W EKYRP+S +V ++ + +PHLL YGPPGTGKT+ L +AR+LYG
Sbjct: 6 WFEKYRPRSFDEVVDLEEVKARLREFVRGGNMPHLLFYGPPGTGKTTMALVLARELYGEY 65
Query: 103 YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALR 162
+ LELNASD+RGI+V+R+++++FA T KA KLV+LDEAD MT DAQ ALR
Sbjct: 66 WRENTLELNASDERGINVIRERVKEFARTAPVG---KAPFKLVILDEADNMTSDAQQALR 122
Query: 163 RVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTE 222
R++E Y +NTRF L+ N ++ II +QSR RF+PL V RL+++ + EG+ +++
Sbjct: 123 RIMEMYAQNTRFILLANYISGIIEPIQSRTVMIRFSPLPKEAVFARLRYIADNEGVKISD 182
Query: 223 GGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESF 282
L A+ GDMR+A+N LQ ++ITEE V G P+ + + LN++F
Sbjct: 183 DALEAIYEFTQGDMRRAINALQIAATTGKEITEETVAKALGMVSPRLLRET----LNDAF 238
Query: 283 ADSFKR----ISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFG 338
+F + I + G+ ++IV+++ K+ +P ++ + +A+ Y + G
Sbjct: 239 RGNFGKAATQIYGFVVDGGIGELEIVKQLHREALKLDVPEYLKPEIAYIIAEAHYAILRG 298
Query: 339 CNDKLQL 345
+ Q+
Sbjct: 299 AHGLTQI 305
>gi|50304813|ref|XP_452362.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49641495|emb|CAH01213.1| KLLA0C03718p [Kluyveromyces lactis]
Length = 320
Score = 214 bits (545), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 124/319 (38%), Positives = 186/319 (58%), Gaps = 11/319 (3%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP L D+ + D V + + ++ +PH+++ G PG GKT++I +A +L G
Sbjct: 10 PWVEKYRPHLLKDIVGNEDTVQRLQTIAADGNMPHMIISGLPGIGKTTSIHCLAHELLGD 69
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFAL 161
Y +LELNASDDRGI+VVR QI+ FA + K K+++LDEAD+MT AQ AL
Sbjct: 70 AYSQAVLELNASDDRGIEVVRNQIKHFAQKKCTLPAGKH--KIIILDEADSMTSGAQQAL 127
Query: 162 RRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVT 221
RR +E Y+ TRFA CNQ NKII LQSRC R++ L V +RL +I+ E + T
Sbjct: 128 RRTMELYSNTTRFAFACNQSNKIIEPLQSRCAILRYSKLTDEQVLKRLLEIIKLEDVQYT 187
Query: 222 EGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNES 281
GL A++ GDMR+A+N LQST + E V+ +P P ++++ LL+ S
Sbjct: 188 NDGLEAIIFTAEGDMRQAINNLQSTVAGFGLVNGENVFQIVDSPHPLIVKRM---LLSGS 244
Query: 282 FADSFKRISEMKMRKGLALVDIVREVTMF-VFKI--KMPSDVRVRLMNDLADIEYRLSFG 338
+S + + E+ + KG + VDIV +T F V K ++ VR+ ++ ++ R+ G
Sbjct: 245 LDESLQYLKELWV-KGYSAVDIV--ITCFRVMKNLDEVKETVRLEMIKEIGFTHMRILEG 301
Query: 339 CNDKLQLGSIISTFTQARS 357
LQL +++ + +S
Sbjct: 302 VGTHLQLSGMLAKIQKLKS 320
>gi|449277649|gb|EMC85743.1| Replication factor C subunit 4 [Columba livia]
Length = 362
Score = 214 bits (545), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 130/332 (39%), Positives = 205/332 (61%), Gaps = 11/332 (3%)
Query: 32 SGTPPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTI 91
SG +K PWVEKYRP+++ +VA ++V + + LP+LL YGPPGTGKTSTI
Sbjct: 27 SGEGKRLKPIPWVEKYRPKNVDEVAFQDEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTI 86
Query: 92 LAVARKLYGAQ-YHNMILELNASDDRGIDVVRQQIQDFA---STQSFSFG-VKASVKLVL 146
LA AR+L+G + + +LELNASD+RGI V+R++++ FA ++ S S G V K+V+
Sbjct: 87 LAAARELFGPELFRQRVLELNASDERGIQVIREKVKAFAQLTASGSRSDGKVCPPFKIVI 146
Query: 147 LDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVT 206
LDEAD+MT AQ ALRR +EK +K TRF LICN +++II L SRC++FRF PL
Sbjct: 147 LDEADSMTSAAQAALRRTMEKESKTTRFCLICNYISRIIEPLTSRCSKFRFKPLSDKIQQ 206
Query: 207 ERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTH--MASQQITEEAVYLCTGN 264
+RL V E E + ++ ++ LV++ GD+RKA+ LQS M ++ITE+ V G
Sbjct: 207 QRLLDVAEKEHVKISSEAVSYLVKVSEGDLRKAITFLQSATRLMGGKEITEKIVTEIAGV 266
Query: 265 PLPKD-IEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDV-RV 322
+PK+ I+++ + SF + + +++ + +G A+ +V ++ V + + D +
Sbjct: 267 -IPKETIDELLSVCQSGSF-EKLETLAKNLINEGYAVAQLVNQLHDAVVESEAYRDKEKS 324
Query: 323 RLMNDLADIEYRLSFGCNDKLQLGSIISTFTQ 354
++ LA+++ L G ++ LQL S+ + Q
Sbjct: 325 AIVEKLAEVDKCLVDGADEYLQLMSLCALVMQ 356
>gi|395536548|ref|XP_003770276.1| PREDICTED: replication factor C subunit 2 [Sarcophilus harrisii]
Length = 406
Score = 214 bits (545), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 117/322 (36%), Positives = 185/322 (57%), Gaps = 3/322 (0%)
Query: 41 SPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYG 100
P VEKYRP L ++ + D V ++ E +P++++ GPPGTGKT++IL +AR L G
Sbjct: 88 GPRVEKYRPTKLTEIVGNEDTVSRLEVFAREGNVPNIIISGPPGTGKTTSILCLARALLG 147
Query: 101 AQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFA 160
+ +LELNAS+DRGIDVVR +I+ FA Q + K K+++LDEAD+MT AQ A
Sbjct: 148 PSLKDAVLELNASNDRGIDVVRNKIKMFAQ-QKVTL-PKGRHKIIILDEADSMTDGAQQA 205
Query: 161 LRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDV 220
LRR +E Y+K TRFAL CN +KII +QSRC R+ L V RL VIE E ++
Sbjct: 206 LRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQVLARLMAVIEKEKVEY 265
Query: 221 TEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNE 280
T+ GL A++ GDMR+ALN LQST+ I E V+ P P ++++ ++
Sbjct: 266 TDDGLEAIIFTAQGDMRQALNNLQSTYSGFGFINSENVFKVCDEPHPLLVKEMLQHCVSA 325
Query: 281 SFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCN 340
+ +++K ++ + R G + D++ + +MP +++ + ++ +++ G N
Sbjct: 326 NIDEAYKILAHL-WRLGYSPEDVIGNIFRVCKTFQMPEYLKLEFIKEIGYTHMKIADGVN 384
Query: 341 DKLQLGSIISTFTQARSAIVAA 362
LQ+ +++ A A+
Sbjct: 385 SLLQMAGLLAKLCHKTLAPAAS 406
>gi|154324182|ref|XP_001561405.1| hypothetical protein BC1G_00490 [Botryotinia fuckeliana B05.10]
Length = 344
Score = 214 bits (545), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 103/224 (45%), Positives = 150/224 (66%), Gaps = 8/224 (3%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP+ L DV A + + R + LPH+L YGPPGTGKTST+LA+A++LYG
Sbjct: 34 PWVEKYRPKGLGDVTAQDHTITVLQRTLQSSNLPHMLFYGPPGTGKTSTVLALAKELYGP 93
Query: 102 Q-YHNMILELNASDDRGIDVVRQQIQDFASTQ----SFSFGVK---ASVKLVLLDEADAM 153
+ + +LELNASD+RGI +VR++++DFA Q S ++ K K+++LDEAD+M
Sbjct: 94 ELMKSRVLELNASDERGISIVREKVKDFARMQLSNPSPAYRQKYPCPPYKIIILDEADSM 153
Query: 154 TKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVI 213
T+DAQ ALRR +E Y++ TRF LICN V +II L SRC++FRF L+ + R++ +
Sbjct: 154 TQDAQSALRRTMETYSRITRFCLICNYVTRIIDPLASRCSKFRFKSLDKGNAVVRVREIA 213
Query: 214 EAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEA 257
+ EG+ + EG + AL++ GD+RKA+ LQS +++E
Sbjct: 214 DKEGVRLEEGAVEALIKCSEGDLRKAITYLQSAARLVGAVSQEG 257
>gi|321264422|ref|XP_003196928.1| DNA replication factor (activator 1 subunit) [Cryptococcus gattii
WM276]
gi|317463406|gb|ADV25141.1| DNA replication factor (activator 1 subunit), putative
[Cryptococcus gattii WM276]
Length = 363
Score = 214 bits (545), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 106/221 (47%), Positives = 148/221 (66%), Gaps = 10/221 (4%)
Query: 37 DIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVAR 96
D K PWVEKYRP+++ DV++ + V + + + LPH+L YGPPGTGKTSTILA+AR
Sbjct: 14 DPKLQPWVEKYRPKTIDDVSSQDNTVAVLRKALASTNLPHMLFYGPPGTGKTSTILALAR 73
Query: 97 KLYGAQ-YHNMILELNASDDRGIDVVRQQIQDFA-STQSFSFGVKA--------SVKLVL 146
+L+G + +LELNASD+RGI VVR++I+ FA T + GV + KL++
Sbjct: 74 QLFGPDLFRARVLELNASDERGISVVREKIKSFARETPRHASGVSSDGKEYPCPPFKLII 133
Query: 147 LDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVT 206
LDEAD+MT+DAQ ALRR++E Y+K TRF L+CN V +II L SRC++FRF PLE
Sbjct: 134 LDEADSMTQDAQSALRRIMETYSKITRFCLVCNYVTRIIEPLASRCSKFRFKPLEQESTR 193
Query: 207 ERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTH 247
R++ + E EG+ G L+ ++ L GD+RKA+ LQ+
Sbjct: 194 ARMEMIAENEGVQTDPGVLSLILELAGGDLRKAITYLQTAQ 234
>gi|344289927|ref|XP_003416692.1| PREDICTED: replication factor C subunit 2-like [Loxodonta africana]
Length = 352
Score = 214 bits (545), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 118/321 (36%), Positives = 181/321 (56%), Gaps = 3/321 (0%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP L ++ + D V + E +P++++ GPPGTGKT++IL +AR L G
Sbjct: 35 PWVEKYRPVKLNEIVGNEDTVSRLQVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGP 94
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFAL 161
+ +LELNAS+DRGIDVVR +I+ FA Q + + K+++LDEAD+MT AQ AL
Sbjct: 95 ALKDAVLELNASNDRGIDVVRNKIKMFAQ-QKVTLP-RGRHKIIILDEADSMTDGAQQAL 152
Query: 162 RRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVT 221
RR +E Y+K TRFAL CN +KII +QSRC R+ L + RL VIE E + T
Sbjct: 153 RRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQILARLMDVIEKEKVQCT 212
Query: 222 EGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNES 281
+ GL A++ GDMR+ALN LQST I E V+ P P ++++ +N
Sbjct: 213 DDGLEAIIFTAQGDMRQALNNLQSTFSGFGFINSENVFKVCDEPHPLLVKEMIQRCVNAD 272
Query: 282 FADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCND 341
+++K ++ + G + DI+ + +M +++ + ++ ++ G N
Sbjct: 273 IDEAYKILAHL-WHLGYSSEDIIGNIFRVCKTFQMAEYLKLEFIKEIGYTHMKIVEGVNS 331
Query: 342 KLQLGSIISTFTQARSAIVAA 362
LQ+ +++ Q A VA+
Sbjct: 332 LLQMAGLLARLCQKTMAPVAS 352
>gi|400601260|gb|EJP68903.1| replication factor C [Beauveria bassiana ARSEF 2860]
Length = 382
Score = 214 bits (545), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 108/217 (49%), Positives = 147/217 (67%), Gaps = 8/217 (3%)
Query: 37 DIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVAR 96
D + PWVEKYRP+SL DVAA V + R LPH+L YGPPGTGKTSTILA+A+
Sbjct: 29 DGRIQPWVEKYRPKSLDDVAAQEHTVTVLQRTLQAANLPHMLFYGPPGTGKTSTILALAK 88
Query: 97 KLYGAQY-HNMILELNASDDRGIDVVRQQIQDFASTQ--SFSFGVKAS-----VKLVLLD 148
+LYG + + +LELNASD+RGI +VR+++++FA Q + G + K+++LD
Sbjct: 89 QLYGPEMMKSRVLELNASDERGISIVREKVKNFARMQLTNPPAGYREKYPCPPFKIIILD 148
Query: 149 EADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTER 208
EAD+MT+DAQ ALRR +E Y+K TRF LICN V +II L SRC++FRF L+ +R
Sbjct: 149 EADSMTQDAQSALRRTMEIYSKITRFCLICNYVTRIIDPLASRCSKFRFKSLDQGSAMKR 208
Query: 209 LKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQS 245
L+ + AE + + +G + ALVR GD+RKA+ LQS
Sbjct: 209 LEEIAAAESVPLGDGAIDALVRCSEGDLRKAVTFLQS 245
>gi|325181066|emb|CCA15478.1| replication factor C subunit 4 putative [Albugo laibachii Nc14]
Length = 333
Score = 214 bits (545), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 125/317 (39%), Positives = 194/317 (61%), Gaps = 12/317 (3%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PW+EKYRP+ + D++ +V T+ + + +LPHLL YGPPGTGKTSTI+AVAR+LYG
Sbjct: 11 PWIEKYRPKVINDISHQEHVVATLRQSIASGQLPHLLFYGPPGTGKTSTIVAVARELYGN 70
Query: 102 QY--HNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQF 159
+ + LELNASDDRGI VVR++++ FA S + K+++LDEAD+MT DAQ
Sbjct: 71 DFRKNGRYLELNASDDRGIKVVREKVKLFAQGAINSSESMPAFKIIVLDEADSMTNDAQS 130
Query: 160 ALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLD 219
ALRR++E Y+K TRF LICN V++II + SRC +FRF+PL + RL ++ E L
Sbjct: 131 ALRRMMEDYSKVTRFCLICNYVSRIIDPIASRCVKFRFSPLTKESMAARLSYIGSQENLR 190
Query: 220 VTEGGLAALVRLCNGDMRKALNILQST-HMASQQITEEAVYLCTGNPLPKDIEQISYW-- 276
+ + + L+ NGD+RKA+N++QS +++T + + G PK++ + ++W
Sbjct: 191 LDDDIIDTLLDCANGDLRKAINLMQSARQTGGKELTNDEIVAVAG-LAPKELLE-NFWKA 248
Query: 277 LLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDV-RVRLMNDLADIEYRL 335
+ SF DS + E + G + I+ +++ + K SD+ + R +A+ + +L
Sbjct: 249 IAGNSF-DSMRTEIESILLSGYPTLTILHQLSEDIMKRSELSDIQKARSCLRIAEADSKL 307
Query: 336 SFGCNDKLQL---GSII 349
G ++ QL GS I
Sbjct: 308 IDGASEYFQLFDVGSYI 324
>gi|67540694|ref|XP_664121.1| hypothetical protein AN6517.2 [Aspergillus nidulans FGSC A4]
gi|40738667|gb|EAA57857.1| hypothetical protein AN6517.2 [Aspergillus nidulans FGSC A4]
gi|259480087|tpe|CBF70899.1| TPA: subunit of heteropentameric replication factor (Eurofung)
[Aspergillus nidulans FGSC A4]
Length = 289
Score = 214 bits (545), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 113/243 (46%), Positives = 154/243 (63%), Gaps = 5/243 (2%)
Query: 32 SGTPPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTI 91
+G PPD + PWVEKYRP L DV + + V+ + + + +PH+++ G PG GKT++I
Sbjct: 20 AGAPPDYEL-PWVEKYRPVFLDDVVGNTETVERLKIIAKDGNMPHVIISGMPGIGKTTSI 78
Query: 92 LAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQ-SFSFGVKASVKLVLLDEA 150
L +AR+L G Y +LELNASD+RGIDVVR +I+ FA + + G K+V+LDEA
Sbjct: 79 LCLARQLLGDSYKEAVLELNASDERGIDVVRNRIKGFAQKKVTLPPGRH---KIVILDEA 135
Query: 151 DAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLK 210
D+MT AQ ALRR +E Y+ TRFA CNQ NKII LQSRC R+A L + +RLK
Sbjct: 136 DSMTSGAQQALRRTMEIYSSTTRFAFACNQSNKIIEPLQSRCAILRYARLTDAQIVKRLK 195
Query: 211 HVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDI 270
V +AE + TE GLAALV GDMR+ALN LQST ++ + V+ +P P +
Sbjct: 196 QVCDAEQVKYTEDGLAALVFSAEGDMRQALNNLQSTWSGFGLVSGDNVFRVVDSPHPIKV 255
Query: 271 EQI 273
+ +
Sbjct: 256 QAM 258
>gi|338712627|ref|XP_001504577.3| PREDICTED: replication factor C subunit 2-like isoform 1 [Equus
caballus]
Length = 353
Score = 214 bits (544), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 121/322 (37%), Positives = 183/322 (56%), Gaps = 4/322 (1%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTID-RLTSENRLPHLLLYGPPGTGKTSTILAVARKLYG 100
PWVEKYRP L ++ + D V ++ L E +P++++ GPPGTGKT++IL +AR L G
Sbjct: 35 PWVEKYRPVKLNEIVGNEDTVSRLEVSLCREGNVPNIIIAGPPGTGKTTSILCLARALLG 94
Query: 101 AQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFA 160
+ +LELNAS+DRGIDVVR +I+ FA Q + K K+++LDEAD+MT AQ A
Sbjct: 95 PALKDAVLELNASNDRGIDVVRNKIKMFAQ-QKVTL-PKGRHKIIILDEADSMTDGAQQA 152
Query: 161 LRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDV 220
LRR +E Y+K TRFAL CN +KII +QSRC R+ L V RL +IE E +
Sbjct: 153 LRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQVLARLMTIIEKENVPY 212
Query: 221 TEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNE 280
T+ GL A+V GDMR+ALN LQST I E V+ P P ++++ +N
Sbjct: 213 TDDGLEAIVFTAQGDMRQALNNLQSTFSGFGFINSENVFKVCDEPHPLLVKEMIQHCVNA 272
Query: 281 SFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCN 340
++K ++ + G + DI+ + +M +++ + ++ +++ G N
Sbjct: 273 DIDGAYKILAHL-WHLGYSPEDIIGNIFRVCKTFQMAEYLKLEFIKEIGYTHVKIADGVN 331
Query: 341 DKLQLGSIISTFTQARSAIVAA 362
LQ+ +++ Q A VA+
Sbjct: 332 SLLQMAGLLARLCQKTMAPVAS 353
>gi|194706108|gb|ACF87138.1| unknown [Zea mays]
Length = 331
Score = 214 bits (544), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 120/316 (37%), Positives = 182/316 (57%), Gaps = 5/316 (1%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP +ADV + D V ++ + + +P+L+L GPPGTGKT++ILA+A +L G
Sbjct: 14 PWVEKYRPSRVADVVGNSDAVARLEVIARDGNMPNLILSGPPGTGKTTSILALAHELLGP 73
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQ-SFSFGVKASVKLVLLDEADAMTKDAQFA 160
Y + +LELNASDDRG+DVVR +I+ FA + + G K+V+LDEAD+MT AQ A
Sbjct: 74 SYRDAVLELNASDDRGLDVVRNKIKMFAQKKVTLQPGRH---KIVILDEADSMTSGAQQA 130
Query: 161 LRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDV 220
LRR +E Y+ TRFAL CN +KII +QSRC RF+ L + RL V+ AE +
Sbjct: 131 LRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLSDQEILGRLMIVVAAEKVPY 190
Query: 221 TEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNE 280
GL A++ +GDMR+ALN LQ+T + I +E V+ P P ++ + +L+
Sbjct: 191 APEGLEAIIFTADGDMRQALNNLQATFSGFRFINQENVFKVCDQPHPLHVKNMVKNVLDG 250
Query: 281 SFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCN 340
F ++ + ++ G + DI+ + V M +++ ++ + R+ G
Sbjct: 251 KFDEACSALKQL-YDLGYSPTDIITTLFRVVKNYDMAEYLKLEMLKETGFAHMRICDGVG 309
Query: 341 DKLQLGSIISTFTQAR 356
LQL +++ F R
Sbjct: 310 SFLQLSGLLAKFALVR 325
>gi|431838862|gb|ELK00791.1| Replication factor C subunit 4 [Pteropus alecto]
Length = 394
Score = 214 bits (544), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 137/361 (37%), Positives = 211/361 (58%), Gaps = 14/361 (3%)
Query: 7 VSLMDFDEDENQNLKP---KDNGKNVIV--SGTPPDIKASPWVEKYRPQSLADVAAHRDI 61
V++ F + + + KP KD G I SG K PWVEKYRP+ + +VA ++
Sbjct: 29 VTMQAFLKGTSISTKPPLTKDRGVAAIAGSSGENKKAKPVPWVEKYRPKCVDEVAFQEEV 88
Query: 62 VDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNM-ILELNASDDRGIDV 120
V + + LP+LL YGPPGTGKTSTILA AR+L+G + + +LELNASD+RGI V
Sbjct: 89 VAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQV 148
Query: 121 VRQQIQDFAS---TQSFSFGVKAS-VKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFAL 176
VR+++++FA + S S G K+V+LDEAD+MT AQ ALRR +EK +K TRF L
Sbjct: 149 VREKVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCL 208
Query: 177 ICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDM 236
ICN V++II L SRC++FRF PL +RL + E + ++ G++ LV++ GD+
Sbjct: 209 ICNYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIAGKEHVKISNEGVSYLVKVSEGDL 268
Query: 237 RKALNILQSTH--MASQQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKM 294
RKA+ LQS ++ITE+ + G + I+ I + SF D + + + +
Sbjct: 269 RKAITFLQSATRLTGGKEITEKVITDIAGVIPAETIDGIFAACQSGSF-DKLEAVVKDLI 327
Query: 295 RKGLALVDIVREVTMFVFKIKMPSDVRVRLMND-LADIEYRLSFGCNDKLQLGSIISTFT 353
+G A +V ++ + + SD + ++ + LA+++ L+ G ++ LQL S+ +T
Sbjct: 328 DEGHAATQLVNQLHDVIVENDNLSDKQKSIITEKLAEVDKCLADGADEHLQLISLCATVM 387
Query: 354 Q 354
Q
Sbjct: 388 Q 388
>gi|47213597|emb|CAG07263.1| unnamed protein product [Tetraodon nigroviridis]
Length = 350
Score = 214 bits (544), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 117/311 (37%), Positives = 183/311 (58%), Gaps = 5/311 (1%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP L + + + V ++ E +P++++ GPPGTGKT++IL +AR L GA
Sbjct: 31 PWVEKYRPLKLDQIVGNEETVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGA 90
Query: 102 QYHNMILELNASDDR--GIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQF 159
+ +LELNAS+DR GIDVVR +I+ FA Q + K K+++LDEAD+MT AQ
Sbjct: 91 SMKDAVLELNASNDRHRGIDVVRNKIKMFAQ-QKVTL-PKGRHKIIILDEADSMTDGAQQ 148
Query: 160 ALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLD 219
ALRR++E Y+K TRFAL CN +KII +QSRC R++ L + RL+ V+E EGL
Sbjct: 149 ALRRIMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYSKLTDGQILARLQDVVEKEGLS 208
Query: 220 VTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLN 279
V+E GL A++ GDMR+ALN LQST+ I E V+ P P ++ + ++
Sbjct: 209 VSEDGLEAVIFTAQGDMRQALNNLQSTNSGFGYINSENVFKVCDEPHPLLVKSMLGHCVD 268
Query: 280 ESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGC 339
+ +++K + + G + DI+ + +M +++ + ++ R++ G
Sbjct: 269 GNVDEAYKVVEHL-WALGYSPEDIIGNIFRVCKTYQMAEYLKLEFVKEIGYTHMRVAEGV 327
Query: 340 NDKLQLGSIIS 350
N LQ+ +++
Sbjct: 328 NSLLQMAGLLA 338
>gi|432853216|ref|XP_004067597.1| PREDICTED: replication factor C subunit 4-like [Oryzias latipes]
Length = 355
Score = 214 bits (544), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 131/329 (39%), Positives = 189/329 (57%), Gaps = 20/329 (6%)
Query: 39 KASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKL 98
K PWVEKYRP+ + +VA ++V + + LP+LL YGPPGTGKTSTILA AR+L
Sbjct: 29 KTVPWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAAREL 88
Query: 99 YGAQ-YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKL------VLLDEAD 151
YG + Y +LELNASD+RGI VVR++++ FA Q G + KL ++LDEAD
Sbjct: 89 YGPELYRQRVLELNASDERGIQVVREKVKTFA--QLTVAGTRPDGKLCPPFKIIILDEAD 146
Query: 152 AMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKH 211
+MT AQ ALRR +EK ++ TRF LICN +++II L SRC++FRF PL ERL
Sbjct: 147 SMTAPAQAALRRTMEKESRTTRFCLICNYISRIIEPLTSRCSKFRFKPLANRIQEERLLE 206
Query: 212 VIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMAS--QQITEEAVYLCTGNPLPKD 269
+ E E L T + ALV++ GD+RKA+ LQ + ++IT+ A+ G K
Sbjct: 207 ICEKENLKYTRESIEALVQVSEGDLRKAITFLQCAARLNMDKEITDRAIVEIAGVVPSKM 266
Query: 270 IEQISYWLLNESFADSFKRISEMKMRK----GLALVDIVREVTMFVFKIKMPSDVRVRLM 325
IE LL F +F+R+ E+ +R G A I+ ++ + + + + +
Sbjct: 267 IE----GLLQTCFKGTFERL-EVTVRNLVNDGYAATQILSQLHESIIESDLKDKDKSIIT 321
Query: 326 NDLADIEYRLSFGCNDKLQLGSIISTFTQ 354
+A + LS G ++ LQ+ S+ S Q
Sbjct: 322 EKMAVVSKCLSDGADEYLQMLSLCSVIMQ 350
>gi|303271997|ref|XP_003055360.1| replication factor c, subunit 2 [Micromonas pusilla CCMP1545]
gi|226463334|gb|EEH60612.1| replication factor c, subunit 2 [Micromonas pusilla CCMP1545]
Length = 335
Score = 214 bits (544), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 122/317 (38%), Positives = 177/317 (55%), Gaps = 8/317 (2%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP + ++ + D V+ + + + +P+L+ GPPG GKT++IL +A L G
Sbjct: 12 PWVEKYRPTKIDEIVGNADAVERLAAMAATGNVPNLIFSGPPGIGKTTSILCLAHTLLGP 71
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQ-SFSFGVKASVKLVLLDEADAMTKDAQFA 160
Y + +LELNASDDRGIDVVR +I+ FA + + G K+VLLDEAD+MT AQ A
Sbjct: 72 AYKDAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRH---KIVLLDEADSMTSAAQQA 128
Query: 161 LRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDV 220
+RR +E Y+ TRFAL CN KII +QSRC RF L V ER+ V+E E +
Sbjct: 129 MRRTMEIYSNTTRFALACNASEKIIEPIQSRCAIVRFTRLSDQEVLERVMKVVEKEEVPY 188
Query: 221 TEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNE 280
GL A+V +GDMR+ALN LQ+TH + +E V+ P P+ I + L
Sbjct: 189 VPDGLEAVVFTADGDMRQALNNLQATHSGFGYVNQENVFKVCDQPHPQVISDMLTHCLRG 248
Query: 281 SFADSFKRISEMKMRKGLALVDI---VREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSF 337
+ D++ RI + G + +DI V VT MP V++ + ++ + R+
Sbjct: 249 NVDDAYDRIKFL-YAAGFSAMDIIGTVYRVTKNFNSEAMPEFVKLEFIREIGFMHMRVGD 307
Query: 338 GCNDKLQLGSIISTFTQ 354
G N LQ+ + + +
Sbjct: 308 GVNSLLQMAGLCAKLCK 324
>gi|344229660|gb|EGV61545.1| P-loop containing nucleoside triphosphate hydrolase protein
[Candida tenuis ATCC 10573]
Length = 359
Score = 214 bits (544), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 108/235 (45%), Positives = 153/235 (65%), Gaps = 10/235 (4%)
Query: 38 IKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARK 97
I+ +PWVEKYRP+SL DVA+ V + R LPH+L YGPPGTGKTSTILA+A+
Sbjct: 19 IEHTPWVEKYRPKSLDDVASQDHTVKVLKRTLVSANLPHMLFYGPPGTGKTSTILALAKS 78
Query: 98 LYGA-QYHNMILELNASDDRGIDVVRQQIQDFA-------STQSFSFGVKASVKLVLLDE 149
LYG + + +LELNASD+RGI +VRQ+I++FA S + K+++LDE
Sbjct: 79 LYGPILFKSRVLELNASDERGISIVRQKIKNFARLTISNPSPEDLEKYPCPPYKIIILDE 138
Query: 150 ADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERL 209
AD+MT DAQ ALRR +E Y+ TRF L+CN + +II L SRC++FRF PL RL
Sbjct: 139 ADSMTNDAQSALRRTMETYSGVTRFCLVCNYITRIIDPLASRCSKFRFKPLNNSDALGRL 198
Query: 210 KHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTH--MASQQITEEAVYLCT 262
+++ EG++ EG L ++++ NGD+R+A+ LQS +S ++ EE + + T
Sbjct: 199 QYIAGHEGIEAEEGTLEEVLKISNGDLRRAITYLQSATRLHSSLKLLEEDISIGT 253
>gi|213513822|ref|NP_001134786.1| replication factor C subunit 2 [Salmo salar]
gi|209735998|gb|ACI68868.1| Replication factor C subunit 2 [Salmo salar]
Length = 353
Score = 214 bits (544), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 115/309 (37%), Positives = 178/309 (57%), Gaps = 3/309 (0%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP L ++ + + V ++ E +P++++ GPPGTGKT++IL +AR L G
Sbjct: 36 PWVEKYRPLKLNEIVGNEETVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGP 95
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFAL 161
+ +LELNAS+DRGIDVVR +I+ FA Q + K K+++LDEAD+MT AQ AL
Sbjct: 96 AMKDAVLELNASNDRGIDVVRNKIKMFAQ-QKVTLP-KGRHKIIILDEADSMTDGAQQAL 153
Query: 162 RRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVT 221
RR +E Y+K TRFAL CN +KII +QSRC R+ L + RL V+E E L +
Sbjct: 154 RRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLRDEQIMMRLLEVVERENLVTS 213
Query: 222 EGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNES 281
GL A++ GDMR+ALN LQST+ I E V+ P P ++ + +N +
Sbjct: 214 NDGLEAIIFTAQGDMRQALNNLQSTNSGFGYINSENVFKVCDEPHPLLVKSMLEHCVNAN 273
Query: 282 FADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCND 341
+++K I ++ G + DI+ + +MP +++ + ++ +++ G N
Sbjct: 274 IDEAYKIIEQL-WALGYSPEDIIGNIFRVCKTFQMPEYLKLEFIKEIGYTHMKVAEGVNS 332
Query: 342 KLQLGSIIS 350
LQ+ ++
Sbjct: 333 LLQMAGLLG 341
>gi|317027180|ref|XP_001400326.2| replication factor C subunit 2 [Aspergillus niger CBS 513.88]
Length = 389
Score = 214 bits (544), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 109/236 (46%), Positives = 151/236 (63%), Gaps = 19/236 (8%)
Query: 21 KPKDNGKNVIVSGTPPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLY 80
KP DN + K PWVEKYRP++L DVAA + R + LPH+L Y
Sbjct: 23 KPTDNKEE--------QAKQQPWVEKYRPKTLDDVAAQDHTTKVLQRTLQASNLPHMLFY 74
Query: 81 GPPGTGKTSTILAVARKLYGAQ-YHNMILELNASDDRGIDVVRQQIQDFASTQ-SFSFGV 138
GPPGTGKTSTILA+A+ L+G Y + ILELNASD+RGI +VR++I++FA Q + S G+
Sbjct: 75 GPPGTGKTSTILALAKSLFGPSLYRSRILELNASDERGIGIVREKIKNFARAQLTHSTGL 134
Query: 139 KAS---------VKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQ 189
K+++LDEAD+MT+DAQ ALRR +E+Y++ TRF L+CN V +II L
Sbjct: 135 GEEYLAQYPCPPFKIIILDEADSMTQDAQSALRRTMEQYSRITRFCLVCNYVTRIIEPLA 194
Query: 190 SRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQS 245
SRC++FRF L+ ERL+H+ + E L + +G + L+ GDMR+A+ +QS
Sbjct: 195 SRCSKFRFKALDNTAAGERLEHIAKVENLRLEDGVVDKLIACSEGDMRRAITYMQS 250
>gi|354492255|ref|XP_003508264.1| PREDICTED: replication factor C subunit 4 [Cricetulus griseus]
gi|344245879|gb|EGW01983.1| Replication factor C subunit 4 [Cricetulus griseus]
Length = 362
Score = 213 bits (543), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 130/331 (39%), Positives = 198/331 (59%), Gaps = 9/331 (2%)
Query: 32 SGTPPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTI 91
SG +K PWVEKYRP+ + +VA ++V + + LP+LL YGPPGTGKTSTI
Sbjct: 27 SGETKKVKPVPWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTI 86
Query: 92 LAVARKLYGAQYHNM-ILELNASDDRGIDVVRQQIQDFAS---TQSFSFGVKAS-VKLVL 146
LA AR+L+G + + +LELNASD+RGI VVR+++++FA + S S G K+V+
Sbjct: 87 LAAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPPFKIVI 146
Query: 147 LDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVT 206
LDEAD+MT AQ ALRR +EK +K TRF LICN V++II L SRC++FRF PL
Sbjct: 147 LDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQR 206
Query: 207 ERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTH--MASQQITEEAVYLCTGN 264
ERL + E E + ++ +A LV++ GD+RKA+ LQS +++ + + G
Sbjct: 207 ERLLDIAEKENVKISHEVIAYLVKVSEGDLRKAITFLQSATRLTGGKEVMRDVITDIAGV 266
Query: 265 PLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRL 324
I+ I + SF D + + + + +G A V +V ++ V + + SD + +
Sbjct: 267 IPATTIDGIFTACQSGSF-DKLEAVVKDLIDEGQAAVQLVNQLHDVVVENEDLSDKQKSI 325
Query: 325 MND-LADIEYRLSFGCNDKLQLGSIISTFTQ 354
+ + LA+++ L+ G ++ LQL S+ +T Q
Sbjct: 326 ITEKLAEVDKCLADGADEHLQLMSLCATVMQ 356
>gi|366988087|ref|XP_003673810.1| hypothetical protein NCAS_0A08710 [Naumovozyma castellii CBS 4309]
gi|342299673|emb|CCC67429.1| hypothetical protein NCAS_0A08710 [Naumovozyma castellii CBS 4309]
Length = 321
Score = 213 bits (543), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 120/312 (38%), Positives = 182/312 (58%), Gaps = 10/312 (3%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP+ L D+ + + + + ++ + +PH+++ G PG GKT+++L +A +L G
Sbjct: 11 PWVEKYRPRVLDDIVGNEETILRLKQIAQDGNMPHMIISGLPGIGKTTSVLCLAHELLGD 70
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFAL 161
Y +LELNASDDRGI+VVR QI+ FA +S K K+++LDEAD+MT AQ AL
Sbjct: 71 DYSKAVLELNASDDRGIEVVRNQIKQFAQKKSLLPPGKH--KIIILDEADSMTAGAQQAL 128
Query: 162 RRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVT 221
RR +E Y+ +TRFA CNQ NKII LQSRC R+ L V +RL +I+AE + T
Sbjct: 129 RRTMELYSNSTRFAFACNQSNKIIEPLQSRCAILRYTKLSDEQVLKRLLQIIKAEDVKYT 188
Query: 222 EGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNES 281
GL A++ GDMR+A+N LQST + + V+ +P P + ++ LL +
Sbjct: 189 NDGLEAIIFTAEGDMRQAINNLQSTVAGHGLVNGDNVFKIVDSPHPLVVRKM---LLAPT 245
Query: 282 FADSFKRISEMKMRKGLALVDIVR---EVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFG 338
+S + + KG + VDIV VT +F I+ R+ ++ ++ R+ G
Sbjct: 246 LDESLTHLRKDLWGKGYSAVDIVTTSFRVTKSLFDIR--ESKRLEMIKEIGITHMRILEG 303
Query: 339 CNDKLQLGSIIS 350
+ LQL S+++
Sbjct: 304 VSTYLQLASMLA 315
>gi|406866228|gb|EKD19268.1| activator 1 41 kDa subunit [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 385
Score = 213 bits (543), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 104/220 (47%), Positives = 148/220 (67%), Gaps = 8/220 (3%)
Query: 34 TPPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILA 93
T + + PWVEKYRP++L DV A + + R + LPH+L YGPPGTGKTST+LA
Sbjct: 25 TKENTRLQPWVEKYRPKNLNDVTAQDHTITVLQRTLQSSNLPHMLFYGPPGTGKTSTVLA 84
Query: 94 VARKLYGAQ-YHNMILELNASDDRGIDVVRQQIQDFASTQ--SFSFGVKA-----SVKLV 145
+A++LYG + + +LELNASD+RGI +VR++++DFA Q + S +A K++
Sbjct: 85 LAKELYGPELMKSRVLELNASDERGISIVREKVKDFARMQLSNPSPAYRALYPCPPYKII 144
Query: 146 LLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHV 205
+LDEAD+MT+DAQ ALRR +E Y+K TRF LICN V +II L SRC++FRF L+ +
Sbjct: 145 ILDEADSMTQDAQSALRRTMETYSKITRFCLICNYVTRIIDPLASRCSKFRFKSLDVGNA 204
Query: 206 TERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQS 245
R++ + E EG+ + +G L+R GD+RKA+ LQS
Sbjct: 205 KRRVEEIAEKEGVSLEDGAAETLIRCSEGDLRKAITFLQS 244
>gi|451927566|gb|AGF85444.1| replication factor C small subunit [Moumouvirus goulette]
Length = 346
Score = 213 bits (543), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 115/304 (37%), Positives = 181/304 (59%), Gaps = 9/304 (2%)
Query: 39 KASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKL 98
K PW EKYRP + + +H++I ++ LPHLL +GP G+GKTSTI A KL
Sbjct: 17 KNIPWTEKYRPHDIDQIISHKEITRSLKNFIKSKTLPHLLFFGPSGSGKTSTIKCCAAKL 76
Query: 99 YGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSF---GVKASVKLVLLDEADAMTK 155
YG+ + MIL+LNAS++RGI+ VR +I++F S ++ F ++ KLV+LDE D+MT
Sbjct: 77 YGSYINCMILQLNASNERGIETVRTKIKNFVSNKNSIFLPVELRNIFKLVILDEIDSMTV 136
Query: 156 DAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEA 215
+AQ LR+ IEK + TRF LICN ++KI ALQSRC FRF+PL + +RLK +
Sbjct: 137 EAQGMLRQTIEKNSSTTRFCLICNDIDKINLALQSRCALFRFSPLNNNEMHKRLKDICNI 196
Query: 216 EGLDVTEGGLAALVRLCNGDMRKALNILQSTHMA-SQQITEEAVYLCTGNPLPKDIEQIS 274
E + ++G + A++ + GDMR A+N LQ ++ + IT VY +G+ +P+ I +I
Sbjct: 197 ENVKHSKGVIDAIINISKGDMRSAINTLQHVNLTINDLITVNDVYKISGHCMPELILEIF 256
Query: 275 YWLLNES----FADSF-KRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLA 329
LL S + D + +I + + + + +++ E+ V + D ++ L+++ A
Sbjct: 257 NVLLELSKKKKYLDKYVDKIINIVVENNITIFNLLSELKNIVLDSDLLDDQKIFLIDNFA 316
Query: 330 DIEY 333
EY
Sbjct: 317 KNEY 320
>gi|212546239|ref|XP_002153273.1| DNA replication factor C subunit Rfc4, putative [Talaromyces
marneffei ATCC 18224]
gi|210064793|gb|EEA18888.1| DNA replication factor C subunit Rfc4, putative [Talaromyces
marneffei ATCC 18224]
Length = 350
Score = 213 bits (543), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 125/334 (37%), Positives = 188/334 (56%), Gaps = 11/334 (3%)
Query: 25 NGKNVIVSGTPPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPG 84
NG +V +G PPD + PWVEKYRP L D+ + + ++ + + + +PH+++ G PG
Sbjct: 13 NGLHVSTAGAPPDYEL-PWVEKYRPVYLDDIVGNTETIERLKIIAKDGNMPHVIISGMPG 71
Query: 85 TGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQ-SFSFGVKASVK 143
GKT++IL +AR++ G Y +LELNASD+RGIDVVR +I+ FA + + G K
Sbjct: 72 IGKTTSILCLARQMLGDAYKEAVLELNASDERGIDVVRNRIKGFAQKKVTLPPGRH---K 128
Query: 144 LVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPV 203
LV+LDEAD+MT AQ ALRR +E Y+ TRFA CNQ NKII LQSRC R++ L
Sbjct: 129 LVILDEADSMTPGAQQALRRTMEIYSTTTRFAFACNQSNKIIEPLQSRCAILRYSRLTDG 188
Query: 204 HVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTG 263
V +RL + EAE +D +E G+AALV GDMR+A+N LQST ++ + V+
Sbjct: 189 QVVKRLSQICEAEKVDFSEDGIAALVFSAEGDMRQAINNLQSTWAGFGFVSGDNVFRVVD 248
Query: 264 NPLPKDIEQI--SYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSD-V 320
+P P ++ + + W E D+ I G + DI+ + I+ S+
Sbjct: 249 SPHPIKVQAMIKACW---EGKVDAALDILNELWNLGYSSHDIISTMFRVTKTIQTLSEHA 305
Query: 321 RVRLMNDLADIEYRLSFGCNDKLQLGSIISTFTQ 354
++ + ++ R+ G LQL ++ +
Sbjct: 306 KLEFIKEIGFTHMRILDGVGTLLQLSGCVAKLCK 339
>gi|357165331|ref|XP_003580347.1| PREDICTED: replication factor C subunit 2-like [Brachypodium
distachyon]
Length = 333
Score = 213 bits (543), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 121/323 (37%), Positives = 183/323 (56%), Gaps = 5/323 (1%)
Query: 35 PPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAV 94
P D PWVEKYRP +ADV + D V ++ + + +P+L+L GPPGTGKT++ILA+
Sbjct: 10 PTDTYDIPWVEKYRPSRVADVVGNSDAVSRLEVIARDGNMPNLILSGPPGTGKTTSILAL 69
Query: 95 ARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQ-SFSFGVKASVKLVLLDEADAM 153
A ++ G Y +LELNASDDRG+DVVR +I+ FA + + G K+V+LDEAD+M
Sbjct: 70 AHEMLGPSYREGVLELNASDDRGLDVVRNKIKMFAQKKVTLPPGRH---KIVILDEADSM 126
Query: 154 TKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVI 213
T AQ ALRR +E Y+ TRFAL CN +KII +QSRC RF+ L + RL V+
Sbjct: 127 TTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLSDQEILGRLMVVV 186
Query: 214 EAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQI 273
AE + GL A++ +GDMR+ALN LQ+T + + +E V+ P P ++ +
Sbjct: 187 AAEKVPYVPEGLEAIIFTADGDMRQALNNLQATVSGFRFVNQENVFKVCDQPHPLHVKNM 246
Query: 274 SYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEY 333
+L+ F ++ + ++ G + DI+ + V M +++ L+ +
Sbjct: 247 VKNVLDGKFDEACSGLKQL-YDLGYSPTDIITTLFRVVKNYDMAEYLKLELLKETGFAHM 305
Query: 334 RLSFGCNDKLQLGSIISTFTQAR 356
R+ G LQL +++ F R
Sbjct: 306 RICDGVGSFLQLSGLLAKFAIVR 328
>gi|21703948|ref|NP_663455.1| replication factor C subunit 4 [Mus musculus]
gi|81916548|sp|Q99J62.1|RFC4_MOUSE RecName: Full=Replication factor C subunit 4; AltName:
Full=Activator 1 subunit 4
gi|13097123|gb|AAH03335.1| Replication factor C (activator 1) 4 [Mus musculus]
gi|74147363|dbj|BAE27563.1| unnamed protein product [Mus musculus]
gi|148665244|gb|EDK97660.1| replication factor C (activator 1) 4 [Mus musculus]
Length = 364
Score = 213 bits (543), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 129/331 (38%), Positives = 197/331 (59%), Gaps = 9/331 (2%)
Query: 32 SGTPPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTI 91
SG +K PWVEKYRP+ + +VA ++V + + LP+LL YGPPGTGKTSTI
Sbjct: 29 SGETKKVKPVPWVEKYRPKCVDEVAFQDEVVAVLRKSLEGADLPNLLFYGPPGTGKTSTI 88
Query: 92 LAVARKLYGAQYHNM-ILELNASDDRGIDVVRQQIQDFAS---TQSFSFGVKAS-VKLVL 146
LA AR+L+G + + +LELNASD+RGI VVR+++++FA + S S G K+V+
Sbjct: 89 LAAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPPFKIVI 148
Query: 147 LDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVT 206
LDEAD+MT AQ ALRR +EK +K TRF LICN V++II L SRC++FRF PL
Sbjct: 149 LDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQ 208
Query: 207 ERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTH--MASQQITEEAVYLCTGN 264
ERL + E E + + +A LV++ GD+RKA+ LQS ++++E+ + G
Sbjct: 209 ERLLDIAEKENVKIGNEEIAYLVKISEGDLRKAITFLQSATRLTGGKEVSEDVITDIAGV 268
Query: 265 PLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRL 324
I+ I + SF D + + + + +G A +V ++ + + + SD +
Sbjct: 269 IPAATIDGIFTACHSGSF-DKLEAVVKNLIDEGHAATQLVNQLHDAIIENENLSDKHKSI 327
Query: 325 MND-LADIEYRLSFGCNDKLQLGSIISTFTQ 354
+ + LA+++ L+ G ++ LQL S+ +T Q
Sbjct: 328 ITEKLAEVDKCLADGADEHLQLMSLCATVMQ 358
>gi|170094016|ref|XP_001878229.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164646683|gb|EDR10928.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 359
Score = 213 bits (543), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 107/248 (43%), Positives = 158/248 (63%), Gaps = 17/248 (6%)
Query: 37 DIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVAR 96
D + PWVEKYRP+++ +V+A V + + + LPH+L YGPPGTGKTSTILA+AR
Sbjct: 21 DPRLQPWVEKYRPKTIDEVSAQEHTVAVLRKTLTSTNLPHMLFYGPPGTGKTSTILALAR 80
Query: 97 KLYGA-QYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKA--------SVKLVLL 147
+L+G + N +LELNASD+RGI +VR +I++FA + V + K+++L
Sbjct: 81 QLFGPDNFRNRVLELNASDERGISIVRDKIKNFARQTPRAQAVASDGKSYPCPPYKIIIL 140
Query: 148 DEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTE 207
DEAD+MT+DAQ ALRR++E Y + TRF L+CN V +II L SRC++FRF PL+
Sbjct: 141 DEADSMTQDAQGALRRIMETYARITRFCLVCNYVTRIIEPLASRCSKFRFTPLDSKSSFS 200
Query: 208 RLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQS-THMASQQITEEAVYLCTGNPL 266
RL ++ AE +D + AL+ +GD+R+A+ LQS + ++S I + L
Sbjct: 201 RLSYIATAEHIDTNPAVINALISTSSGDLRRAITYLQSASRLSSSTIPPTPI-------L 253
Query: 267 PKDIEQIS 274
P DI++I+
Sbjct: 254 PSDIQEIA 261
>gi|358054157|dbj|GAA99693.1| hypothetical protein E5Q_06396 [Mixia osmundae IAM 14324]
Length = 446
Score = 213 bits (543), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 102/212 (48%), Positives = 149/212 (70%), Gaps = 6/212 (2%)
Query: 39 KASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKL 98
+A PWVEKYRP+++ D++A + V + + LPH+L YGPPGTGKTSTILA+A++L
Sbjct: 91 QAQPWVEKYRPKTIDDISAQENTVRVLRKSLENANLPHMLFYGPPGTGKTSTILALAKQL 150
Query: 99 YGAQ-YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVK----ASVKLVLLDEADAM 153
+G + + +LELNASD+RGI VVR++I++FA + S V K+++LDEAD+M
Sbjct: 151 FGPEAFRTRVLELNASDERGITVVREKIKNFAKI-AISPAVGDYPCPPYKIIILDEADSM 209
Query: 154 TKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVI 213
T+DAQ ALRR++E Y+K TRF LICN V +II + SRC++FRF PL+ + +RL++V
Sbjct: 210 TQDAQSALRRIMENYSKITRFCLICNYVTRIIEPITSRCSKFRFKPLDTTNTQKRLEYVC 269
Query: 214 EAEGLDVTEGGLAALVRLCNGDMRKALNILQS 245
+ E + E + AL+R GD+R+A+ LQS
Sbjct: 270 QKEEVQCGEESVQALIRCSEGDLRRAITYLQS 301
>gi|57642153|ref|YP_184631.1| replication factor C small subunit [Thermococcus kodakarensis KOD1]
gi|62287362|sp|Q5JHP2.1|RFCS_PYRKO RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit;
Contains: RecName: Full=Pko RFC intein
gi|57160477|dbj|BAD86407.1| replication factor C, small subunit [Thermococcus kodakarensis
KOD1]
Length = 866
Score = 213 bits (543), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 103/272 (37%), Positives = 177/272 (65%), Gaps = 3/272 (1%)
Query: 82 PPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKAS 141
P T+ LA+AR+L+G + + LELNASD+RGI+V+R+++++FA T+ AS
Sbjct: 594 PTVVHNTTAALALARELFGENWRHNFLELNASDERGINVIREKVKEFARTKPIG---GAS 650
Query: 142 VKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLE 201
K++ LDEADA+T+DAQ ALRR +E ++ N RF L CN +KII +QSRC FRF PL
Sbjct: 651 FKIIFLDEADALTQDAQQALRRTMEMFSNNVRFILSCNYSSKIIEPIQSRCAIFRFRPLR 710
Query: 202 PVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLC 261
+ +R++++ E EGL++TE GL A++ + GD+R+A+N+LQ+ +IT+E V+L
Sbjct: 711 DEDIAKRIRYIAENEGLELTEEGLQAILYVAEGDLRRAINVLQAAAALDTKITDENVFLV 770
Query: 262 TGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVR 321
P+D+ ++ L +F + +++ ++ +R+GL+ D++ ++ VF + +P D +
Sbjct: 771 ASRARPEDVREMMTLALEGNFLKAREKLRDILLRQGLSGEDVLIQMHKEVFNLPIPEDKK 830
Query: 322 VRLMNDLADIEYRLSFGCNDKLQLGSIISTFT 353
V L + + + +RL G N+ +QL ++++ FT
Sbjct: 831 VALADKIGEYNFRLVEGANEMIQLEALLAQFT 862
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 28/53 (52%)
Query: 38 IKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTST 90
I PWVEKYRPQ L D+ IV + +PHLL GPPG GK T
Sbjct: 10 ILEKPWVEKYRPQRLEDIVGQDHIVKRLKHYVKTGSMPHLLFAGPPGVGKCLT 62
>gi|194222681|ref|XP_001498117.2| PREDICTED: replication factor C subunit 4 [Equus caballus]
Length = 364
Score = 213 bits (543), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 131/343 (38%), Positives = 201/343 (58%), Gaps = 11/343 (3%)
Query: 22 PKDNGKNVIV--SGTPPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLL 79
PKD G SG K PWVEKYRP+ + +VA ++V + + LP+LL
Sbjct: 17 PKDRGVAATAGSSGENKKAKPVPWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLF 76
Query: 80 YGPPGTGKTSTILAVARKLYGAQYHNM-ILELNASDDRGIDVVRQQIQDFAS---TQSFS 135
YGPPGTGKTSTILA AR+L+G + + +LELNASD+RGI VVR+++++FA + S S
Sbjct: 77 YGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRS 136
Query: 136 FGVKAS-VKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTR 194
G K+V+LDEAD+MT AQ ALRR +EK +K TRF LICN +++II L SRC++
Sbjct: 137 DGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYISRIIEPLTSRCSK 196
Query: 195 FRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTH--MASQQ 252
FRF PL +RL + E + ++ G+A LV++ GD+RKA+ LQS ++
Sbjct: 197 FRFKPLSDKIQQQRLLDIAGKEHVKISNEGIAYLVKVSEGDLRKAITFLQSATRLTGGKE 256
Query: 253 ITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVF 312
+TE+ + G + I+ + + SF D + + + +G A +V ++ +
Sbjct: 257 VTEKVITDIAGVIPAETIDGLLAACQSGSF-DKLEAAVKNLIDEGHAATQLVNQLHDVIV 315
Query: 313 KIKMPSDVRVRLMND-LADIEYRLSFGCNDKLQLGSIISTFTQ 354
+ SD + ++ + LA+++ L+ G ++ LQL S+ +T Q
Sbjct: 316 ENDNLSDKQKSIITEKLAEVDKCLADGADEHLQLMSLCATVMQ 358
>gi|226493143|ref|NP_001149058.1| LOC100282678 [Zea mays]
gi|195624372|gb|ACG34016.1| replication factor C subunit 4 [Zea mays]
Length = 331
Score = 213 bits (542), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 120/316 (37%), Positives = 181/316 (57%), Gaps = 5/316 (1%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP +ADV + D V ++ + + +P+L+L GPPGTGKT++ILA+A +L G
Sbjct: 14 PWVEKYRPSRVADVVGNSDAVARLEVIARDGNMPNLILSGPPGTGKTTSILALAHELLGP 73
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQ-SFSFGVKASVKLVLLDEADAMTKDAQFA 160
Y + +LELNASDDRG+DVVR +I+ FA + + G K+V+LDEAD+MT AQ A
Sbjct: 74 SYRDAVLELNASDDRGLDVVRNKIKMFAQKKVTLQPGRH---KIVILDEADSMTSGAQQA 130
Query: 161 LRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDV 220
LRR +E Y+ TRFAL CN +KII +QSRC RF+ L + RL V+ AE +
Sbjct: 131 LRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLSDQEILGRLMIVVAAEKVPY 190
Query: 221 TEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNE 280
GL A++ +GDMR+ALN LQ+T + I +E V+ P P ++ + +L+
Sbjct: 191 APEGLEAIIFTADGDMRQALNNLQATFSGFRFINQENVFKVCDQPHPLHVKNMVKNVLDG 250
Query: 281 SFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCN 340
F + + ++ G + DI+ + V M +++ ++ + R+ G
Sbjct: 251 KFDEPCSALKQL-YDLGYSPTDIITTLFRVVKNYDMAEYLKLEMLKETGFAHMRICDGVG 309
Query: 341 DKLQLGSIISTFTQAR 356
LQL +++ F R
Sbjct: 310 SFLQLSGLLAKFALVR 325
>gi|403217950|emb|CCK72442.1| hypothetical protein KNAG_0K00740 [Kazachstania naganishii CBS
8797]
Length = 319
Score = 213 bits (542), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 121/313 (38%), Positives = 181/313 (57%), Gaps = 11/313 (3%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP L D+ + D ++ + + + +PH+++ G PG GKT++I +A ++ G
Sbjct: 8 PWVEKYRPHKLDDIVGNEDTIERLKEIVKDGNMPHMIISGLPGIGKTTSIQCLANEMLGE 67
Query: 102 QY-HNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFA 160
+ + +LELNASDDRGIDVVR QI+ FA + K K+V+LDEAD+MT AQ A
Sbjct: 68 KLLGSAVLELNASDDRGIDVVRNQIKHFAQVKCHLPPGKH--KIVILDEADSMTSGAQQA 125
Query: 161 LRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDV 220
LRR +E Y+ TRFA CNQ NKII LQSRC R++ L V +RL +I+ E +
Sbjct: 126 LRRTMELYSNTTRFAFACNQSNKIIEPLQSRCAILRYSKLNDEQVLKRLLQIIKLEDVQY 185
Query: 221 TEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNE 280
T GL A++ GDMR+A+N LQST + + V+ +P P ++++ LL E
Sbjct: 186 TNDGLEAIIFTAEGDMRQAINNLQSTAAGHGLVNGDNVFRIVDSPHPLIVKKM---LLAE 242
Query: 281 SFADSFKRISEMKMRKGLALVDIVR---EVTMFVFKIKMPSDVRVRLMNDLADIEYRLSF 337
F D+ + + KG + VDIV VT +F++K R+ +M ++ R+
Sbjct: 243 QFDDALAILKKELWDKGYSAVDIVTTCFRVTKSLFQVKEAK--RLEMMKEIGITHMRILE 300
Query: 338 GCNDKLQLGSIIS 350
G LQL ++++
Sbjct: 301 GVGTYLQLAAMVA 313
>gi|255070803|ref|XP_002507483.1| replication factor c, subunit 2 [Micromonas sp. RCC299]
gi|226522758|gb|ACO68741.1| replication factor c, subunit 2 [Micromonas sp. RCC299]
Length = 334
Score = 213 bits (542), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 119/321 (37%), Positives = 175/321 (54%), Gaps = 8/321 (2%)
Query: 38 IKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARK 97
+ + PWVEKYRP + D+ ++D VD + + S +P+L+ GPPG GKT+++L +A
Sbjct: 7 VASLPWVEKYRPTKIDDIVGNKDAVDRLTAIASTGNMPNLIFTGPPGIGKTTSVLCLAHT 66
Query: 98 LYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQ-SFSFGVKASVKLVLLDEADAMTKD 156
L G Y + +LELNASDDRGID VR +I+ FA + + G K++LLDEAD+MT
Sbjct: 67 LLGPSYKDAVLELNASDDRGIDAVRNKIKMFAQKKVTLPPGRH---KIILLDEADSMTSA 123
Query: 157 AQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAE 216
AQ ALRR +E Y+ TRFAL CN KII +QSRC RF L V ER+ V+E E
Sbjct: 124 AQQALRRTMELYSSTTRFALACNASEKIIEPIQSRCAIVRFTRLSDQEVLERIVKVVERE 183
Query: 217 GLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYW 276
+ GL A+V +GDMR+ALN +Q+TH + +E V+ P P+ +
Sbjct: 184 EVPYVPDGLEAVVFTADGDMRQALNNVQATHSGFGFVNQENVFKVCDQPHPQIVVDCVAC 243
Query: 277 LLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKI---KMPSDVRVRLMNDLADIEY 333
L + ++ + G + D++ V V MP V++ ++ ++
Sbjct: 244 CLRGDVDHAHDKMKSLH-DAGFSAADVIGTVYRVVKNFDAESMPEFVKLEMIREVGFTHM 302
Query: 334 RLSFGCNDKLQLGSIISTFTQ 354
R+ G N LQLG + + Q
Sbjct: 303 RIGDGVNSLLQLGGMCAKMCQ 323
>gi|346321024|gb|EGX90624.1| activator 1 41 kDa subunit [Cordyceps militaris CM01]
Length = 382
Score = 213 bits (542), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 107/217 (49%), Positives = 146/217 (67%), Gaps = 8/217 (3%)
Query: 37 DIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVAR 96
D + PWVEKYRP+SL D+AA V + R LPH+L YGPPGTGKTSTILA+A+
Sbjct: 29 DGRIQPWVEKYRPKSLDDIAAQEHTVTVLQRTLQAANLPHMLFYGPPGTGKTSTILALAK 88
Query: 97 KLYGAQY-HNMILELNASDDRGIDVVRQQIQDFASTQ--SFSFGVK-----ASVKLVLLD 148
+LYG + + +LELNASD+RGI +VR ++++FA Q + G + K+++LD
Sbjct: 89 QLYGPEMMKSRVLELNASDERGISIVRDKVKNFARMQLTNPPAGYRDKYPCPPFKIIILD 148
Query: 149 EADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTER 208
EAD+MT+DAQ ALRR +E Y+K TRF LICN V +II L SRC++FRF L+ +R
Sbjct: 149 EADSMTQDAQSALRRTMEIYSKITRFCLICNYVTRIIDPLASRCSKFRFKSLDQGSAKKR 208
Query: 209 LKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQS 245
L+ + AE + V +G + AL+R GD+RKA+ LQS
Sbjct: 209 LEEIATAESVPVDDGAIDALIRCSEGDLRKAVTFLQS 245
>gi|452846354|gb|EME48287.1| hypothetical protein DOTSEDRAFT_147627 [Dothistroma septosporum
NZE10]
Length = 352
Score = 213 bits (542), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 118/317 (37%), Positives = 182/317 (57%), Gaps = 10/317 (3%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP L D+ + + ++ + + + +PH+++ G PG GKT+++L +AR+L GA
Sbjct: 29 PWVEKYRPVFLDDIVGNTETIERLKIIAKDGNMPHVIISGMPGIGKTTSVLCLARQLLGA 88
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQ-SFSFGVKASVKLVLLDEADAMTKDAQFA 160
Y +LELNASD+RGIDVVR +I+ FA + + G + K+V+LDEAD+MT AQ A
Sbjct: 89 AYKEAVLELNASDERGIDVVRNRIKGFAQKKVTLPAGRQ---KIVILDEADSMTSGAQQA 145
Query: 161 LRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDV 220
LRR +E Y+ TRFA CNQ NKII LQSRC R+A L V +RL + +AEG++
Sbjct: 146 LRRTMEIYSSTTRFAFACNQSNKIIEPLQSRCAILRYARLTDGQVVKRLYQIAKAEGVEY 205
Query: 221 TEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNE 280
++ G+AALV GDMR+A+N LQSTH + + V+ +P P ++ + +
Sbjct: 206 SDDGIAALVFSAEGDMRQAINNLQSTHAGFGFVNGDNVFRVVDSPHPIKVQGMIRSCQDS 265
Query: 281 SFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPS---DVRVRLMNDLADIEYRLSF 337
++ + E+ G + DI+ TMF +PS ++ + ++ R+
Sbjct: 266 KVDEALDSLKEL-WDLGYSSHDIIS--TMFKVTKSIPSLSEHTKLEFIREIGFTHMRILE 322
Query: 338 GCNDKLQLGSIISTFTQ 354
G LQL ++ +
Sbjct: 323 GMQTYLQLAGCVAKLCK 339
>gi|159484076|ref|XP_001700086.1| DNA replication factor C complex subunit 2 [Chlamydomonas
reinhardtii]
gi|158272582|gb|EDO98380.1| DNA replication factor C complex subunit 2 [Chlamydomonas
reinhardtii]
Length = 340
Score = 213 bits (542), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 121/327 (37%), Positives = 189/327 (57%), Gaps = 19/327 (5%)
Query: 35 PPDIKAS------PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKT 88
PP+ A+ PW+EKYRPQ + ++ + + V + + E +P+++L GPPGTGKT
Sbjct: 11 PPEETATKGGYELPWLEKYRPQFINEIVGNTEAVARLQVIAEEGNMPNVILSGPPGTGKT 70
Query: 89 STILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQ-SFSFGVKASVKLVLL 147
++IL +A +L G Y +LELNASDDRGIDVVR +I+ FA + + G K+V+L
Sbjct: 71 TSILCLAHQLLGPNYKEAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRH---KIVIL 127
Query: 148 DEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTE 207
DEAD+MT AQ ALRR +E Y+ TRFAL CN +KII +QSRC R+ + +
Sbjct: 128 DEADSMTAGAQQALRRTMEIYSGTTRFALACNMSSKIIEPIQSRCAIVRYTRIPDEDILA 187
Query: 208 RLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLP 267
R++ V E EG+ + G+ A++ +GDMR+ALN +Q+TH I++E V+ P P
Sbjct: 188 RMRLVAEKEGVTYNDAGMEAVIFTADGDMRQALNNMQATHSGFGFISQENVFKVCDQPHP 247
Query: 268 K----DIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVR 323
K I + L+ ++A K + +M G + +DI+ V V +P +++
Sbjct: 248 KLVMGIIAKCKAGDLDAAYA-GMKELQDM----GYSPMDIITTVFRVVRNADIPEFLKLE 302
Query: 324 LMNDLADIEYRLSFGCNDKLQLGSIIS 350
+ ++ R+S G N +LQL +++
Sbjct: 303 YLREIGFCHMRVSEGVNSRLQLSGLLA 329
>gi|412990864|emb|CCO18236.1| predicted protein [Bathycoccus prasinos]
Length = 350
Score = 213 bits (542), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 120/322 (37%), Positives = 191/322 (59%), Gaps = 9/322 (2%)
Query: 39 KASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKL 98
K PWV+KYRP+ ++DVA ++V +++ + LPH+L YGPPGTGKT+ LA+ ++L
Sbjct: 22 KKEPWVDKYRPKKVSDVAYQTEVVSALEKAMETHNLPHMLFYGPPGTGKTTCALAICKQL 81
Query: 99 YGAQY-HNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKA----SVKLVLLDEADAM 153
YG + +LELNASD+RGI VVR +I+ FAST + GV K+++LDEAD+M
Sbjct: 82 YGPELGKKRVLELNASDERGISVVRGKIKSFAST-TVGEGVPGYPCPPYKILILDEADSM 140
Query: 154 TKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVI 213
T DAQ ALRR++E Y++ TRF ++CN V+KII + SRC +FRF L+ + ER+ +
Sbjct: 141 TNDAQSALRRMMETYSRVTRFFILCNYVSKIIDPISSRCAKFRFKSLDGGTMHERINFIA 200
Query: 214 EAEGLDVTEGGLAALVRLCNGDMRKALNILQS-THMASQQITEEAVYLCTGNPLPKDIEQ 272
+ E L + EG L AL + GDMRKA+ +LQS + ++T + + G + IE+
Sbjct: 201 KGENLQLAEGTLQALEHVSAGDMRKAITLLQSAASLFGPELTGDRIREVAGVIPDEKIEE 260
Query: 273 ISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSD-VRVRLMNDLADI 331
+ L + + ++E ++ G + I+ + ++ + D ++ + L ++
Sbjct: 261 L-LQLCVAGDSQKSQALAEDILKDGFPCLQILEQFGYYLADSDLLEDEMKAEICLKLGEV 319
Query: 332 EYRLSFGCNDKLQLGSIISTFT 353
E +L G ++ LQL IS T
Sbjct: 320 EKKLVDGADEWLQLSHCISIAT 341
>gi|281204159|gb|EFA78355.1| replication factor C subunit [Polysphondylium pallidum PN500]
Length = 319
Score = 213 bits (542), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 114/300 (38%), Positives = 175/300 (58%), Gaps = 20/300 (6%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP+ + D+ + + V ++ ++ + LP++++ GPPGTGKT++IL +A++L G
Sbjct: 18 PWVEKYRPKEIKDIVGNEETVSRLESISMDGNLPNIIISGPPGTGKTTSILCLAQQLLGP 77
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQ-SFSFGVKASVKLVLLDEADAMTKDAQFA 160
Y + ELNASDDR +DVVR +I+ FA T+ + G K+++LDEAD+MT AQ A
Sbjct: 78 NYKEAVYELNASDDRTLDVVRDKIKTFAQTKVTLPPGRH---KIIILDEADSMTSGAQQA 134
Query: 161 LRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDV 220
LRR++E Y+ TRFAL CNQ +KII +QSRC R+ L V +RL+ VIEAE +
Sbjct: 135 LRRIMEIYSSTTRFALACNQSSKIIEPIQSRCAVLRYTRLTDAQVLKRLREVIEAEKVPY 194
Query: 221 TEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNE 280
T+ GL AL+ GDMR+ALN LQST + ++ + V+ +
Sbjct: 195 TDDGLEALIFTAEGDMRQALNNLQSTFTGFEMVSGDNVFRHCADG--------------- 239
Query: 281 SFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCN 340
F D+FK ++ KG + +DI+ + MP ++ + ++ R++ G N
Sbjct: 240 RFEDAFKNTKDL-WDKGYSSMDIISTFFKVAKTLDMPEYQKLEFIKEIGFTNLRITQGVN 298
>gi|116785245|gb|ABK23650.1| unknown [Picea sitchensis]
gi|224286688|gb|ACN41047.1| unknown [Picea sitchensis]
Length = 339
Score = 213 bits (542), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 122/323 (37%), Positives = 181/323 (56%), Gaps = 8/323 (2%)
Query: 35 PPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAV 94
P + WVEKYRP+ + DVA ++V + LPHLL YGPPGTGKT+T LA+
Sbjct: 3 PIHSSSQQWVEKYRPKQVKDVAHQEEVVRALTNTLETGNLPHLLFYGPPGTGKTTTALAI 62
Query: 95 ARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKAS-----VKLVLLDE 149
A +L+G +Y + +LELNASDDRGI+VVR +I+DFA+ S + K+++LDE
Sbjct: 63 AHQLFGPEYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSGNTNSGYLCPPFKIIILDE 122
Query: 150 ADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERL 209
AD+MT+DAQ ALRR +E Y+K TRF ICN V++II L SRC +FRF PL +T R+
Sbjct: 123 ADSMTEDAQNALRRTMETYSKVTRFCFICNYVSRIIEPLASRCAKFRFKPLVEDIMTGRI 182
Query: 210 KHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKD 269
H+ + EG+ + L L + GD+R+A+ LQS + +PK+
Sbjct: 183 LHICKEEGVHLDSDALTMLSSISEGDLRRAITYLQSAARLYGSSISSNNLISVSGIVPKE 242
Query: 270 IEQISYWLLNES-FADSFKRISEMKMRKGLALVDIVREVT-MFVFKIKMPSDVRVRLMND 327
+ Q Y F + K +S++ + +G I ++ M V + + + R+
Sbjct: 243 VVQSLYQACKTGQFDLAQKEVSDI-IAEGHPASQIFSQLYDMVVQATDISDETKARISQR 301
Query: 328 LADIEYRLSFGCNDKLQLGSIIS 350
LA+ + L G ++ LQL + S
Sbjct: 302 LAEADKCLIDGADEYLQLLDVAS 324
>gi|146324243|ref|XP_753175.2| replication factor C subunit [Aspergillus fumigatus Af293]
gi|129557997|gb|EAL91137.2| replication factor C subunit [Aspergillus fumigatus Af293]
gi|159127094|gb|EDP52210.1| replication factor C subunit [Aspergillus fumigatus A1163]
Length = 389
Score = 213 bits (542), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 127/358 (35%), Positives = 187/358 (52%), Gaps = 42/358 (11%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYG- 100
PW +KYRP +L V + + + + PHLL +GPPGTGKTSTILA+AR+LYG
Sbjct: 20 PWQDKYRPATLKQVVGQDETLSVLKSFMIHRKFPHLLFHGPPGTGKTSTILALARQLYGD 79
Query: 101 AQYHNMILELNASDDRGIDVVRQQIQDFASTQS-FSFGVKAS----VKLVLLDEADAMTK 155
A M+LELNASDDR + V+ +I+ FAST+ F ++ S KLV+LDEAD M
Sbjct: 80 ADMSQMVLELNASDDRSVHDVQIRIKAFASTRPIFKVPLRESPYNMFKLVILDEADTMDH 139
Query: 156 DAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEA 215
AQ ALRR+IE Y TRF +I N ++K++PAL SRC R RF PL P + L V
Sbjct: 140 TAQMALRRIIEDYAAFTRFCIITNNIHKLLPALISRCARLRFPPLRPSAIRTLLLQVATT 199
Query: 216 EGLDVTEGGLAALVRLCNGDMRKALNILQSTHM-------------------------AS 250
E + V L L +GDMR+AL +LQ H+ S
Sbjct: 200 ENIQVRPEALEYLSTTSHGDMRQALAVLQECHLNSTFWSDDEPTTTISRIKFLMMASETS 259
Query: 251 QQ-----------ITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLA 299
QQ IT E + T PL DI I +++ I+++K GL
Sbjct: 260 QQASTSNLPAQGVITVETIQEYTHTPLSSDISVIIEGAKGDNYNRCIISINQIKSETGLI 319
Query: 300 LVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDKLQLGSIISTFTQARS 357
L D++ ++ + ++P+ V++ ++ L++IE L+ G ++++Q +++ + S
Sbjct: 320 LADLLTAISARLQHAQVPAPVKITWLDALSEIEANLACGGSEEIQSAALVGAMKKGWS 377
>gi|57109940|ref|XP_535837.1| PREDICTED: replication factor C subunit 4 [Canis lupus familiaris]
Length = 363
Score = 213 bits (542), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 132/331 (39%), Positives = 196/331 (59%), Gaps = 9/331 (2%)
Query: 32 SGTPPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTI 91
SG K PWVEKYRP+ + +VA ++V + + LP+LL YGPPGTGKTSTI
Sbjct: 28 SGENKKTKPVPWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTI 87
Query: 92 LAVARKLYGAQYHNM-ILELNASDDRGIDVVRQQIQDFAS---TQSFSFGVKAS-VKLVL 146
LA AR+L+G + + +LELNASD+RGI VVR+++++FA + S S G K+V+
Sbjct: 88 LAAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPPFKIVI 147
Query: 147 LDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVT 206
LDEAD+MT AQ ALRR +EK +K TRF LICN V++II L SRC++FRF PL
Sbjct: 148 LDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQ 207
Query: 207 ERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTH--MASQQITEEAVYLCTGN 264
+RL + + E + V+ G+A LV++ GD+RKA+ LQS ++ITE+ + G
Sbjct: 208 QRLLDIADKEHVKVSNEGIAYLVKVSEGDLRKAITFLQSATRLTGGKEITEKVITDIAGV 267
Query: 265 PLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRL 324
I+ I + SF D + + + + +G A +V + V + SD + +
Sbjct: 268 IPAGTIDGIFAACQSGSF-DKLEAVVKDLIDEGHAATQLVSQFHDVVVENDNLSDKQKSI 326
Query: 325 MND-LADIEYRLSFGCNDKLQLGSIISTFTQ 354
+ + LA+ + L+ G ++ LQL S+ +T Q
Sbjct: 327 ITEKLAEADKCLADGADEHLQLISLCATVMQ 357
>gi|453087153|gb|EMF15194.1| P-loop containing nucleoside triphosphate hydrolase protein
[Mycosphaerella populorum SO2202]
Length = 349
Score = 213 bits (542), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 122/338 (36%), Positives = 188/338 (55%), Gaps = 11/338 (3%)
Query: 21 KPKDNGKNVIVSGTPPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLY 80
K NG +GTP + + PWVEKYRP L D+ + + ++ + + + +PH+++
Sbjct: 6 KAASNGVKANANGTPSNYEL-PWVEKYRPVFLDDIVGNTETIERLKIIAKDGNMPHVIIS 64
Query: 81 GPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQ-SFSFGVK 139
G PG GKT+++L +AR+L G Y +LELNASD+RGIDVVR +I+ FA + + G +
Sbjct: 65 GMPGIGKTTSVLCLARQLLGEAYKEAVLELNASDERGIDVVRNRIKGFAQKKVTLPPGRQ 124
Query: 140 ASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAP 199
K+V+LDEAD+MT AQ ALRR +E Y+ TRFA CNQ NKII LQSRC R+A
Sbjct: 125 ---KIVILDEADSMTSGAQQALRRTMEIYSGTTRFAFACNQSNKIIEPLQSRCAILRYAR 181
Query: 200 LEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVY 259
L V +R+ + +AE + ++ GLAALV GDMR+A+N LQSTH + + V+
Sbjct: 182 LTDAQVVKRINQICKAENVQFSDDGLAALVFSAEGDMRQAINNLQSTHAGFGFVNSDNVF 241
Query: 260 LCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPS- 318
+P P ++ + + ++ + E+ G + DI+ +MF +PS
Sbjct: 242 RVVDSPHPIKVQAMIKSCHERNVDEALDALKEL-WGLGYSSHDIIS--SMFKVTKTIPSL 298
Query: 319 --DVRVRLMNDLADIEYRLSFGCNDKLQLGSIISTFTQ 354
++ + ++ R+ G LQL I+ +
Sbjct: 299 AEHTKLEFIREIGFTHMRILEGVQTYLQLAGCIAKLCK 336
>gi|195447178|ref|XP_002071099.1| GK25619 [Drosophila willistoni]
gi|194167184|gb|EDW82085.1| GK25619 [Drosophila willistoni]
Length = 355
Score = 213 bits (542), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 123/325 (37%), Positives = 188/325 (57%), Gaps = 24/325 (7%)
Query: 35 PPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAV 94
PP +PWVEKYRP+S+ DV ++V + + LP++LLYGPPGTGKTSTILA
Sbjct: 29 PP----APWVEKYRPRSVEDVVEQSEVVAVLKKCVEGADLPNMLLYGPPGTGKTSTILAA 84
Query: 95 ARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKA----SVKLVLLDEA 150
R+++G Y + ILELNASD+RGI+VVR +I++FA + + K+++LDEA
Sbjct: 85 GRQIFGDMYRDRILELNASDERGINVVRTKIKNFAQLSASNVRPDGRPCPPFKIIILDEA 144
Query: 151 DAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLK 210
D+MT AQ ALRR +EK +++TRF LICN V++II + SRCT+FRF L + ERLK
Sbjct: 145 DSMTHAAQAALRRTMEKESRSTRFCLICNYVSRIIVPITSRCTKFRFKSLGEDQIIERLK 204
Query: 211 HVIEAEGLDV-TEGGLAALVRLCNGDMRKALNILQSTH--MASQQITEEAVYLCTGNPLP 267
+ +AEG+ + E ++VR+ GDMR+A+ LQS + + I +P
Sbjct: 205 LICQAEGVQMDGEESYKSIVRISGGDMRRAITTLQSCYRLKGPEHIINTQDLFEMSGIIP 264
Query: 268 KDIEQISYWL---LNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDV---- 320
Y+L L + ++KR+ + G + + + + FV I + ++
Sbjct: 265 ------DYYLDDYLEVCRSGNYKRLEDFVREIGYSAYSVGQMLEQFVEFIVLNENLTDPQ 318
Query: 321 RVRLMNDLADIEYRLSFGCNDKLQL 345
+ R+ + L + YRL G ++ LQ+
Sbjct: 319 KARICDKLGECCYRLQDGGSEYLQI 343
>gi|386783685|gb|AFJ24737.1| replication factor C subunit 2, partial [Schmidtea mediterranea]
Length = 341
Score = 213 bits (541), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 112/323 (34%), Positives = 186/323 (57%), Gaps = 14/323 (4%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PW+EKYRP L+D+ + + ++ + + LP+L++ GPPG+GKT++IL +AR + G
Sbjct: 23 PWLEKYRPLVLSDIVGNEGTIKRLEIFSKQGNLPNLIIAGPPGSGKTTSILCLARAMLGE 82
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQ-SFSFGVKASVKLVLLDEADAMTKDAQFA 160
Y N +LELNAS+DRGI+VVR +I+ FA + + G+ K+++LDE D+MT+ AQ A
Sbjct: 83 TYKNAVLELNASNDRGIEVVRNKIKSFARNKVNLPDGMH---KIIILDEGDSMTEGAQQA 139
Query: 161 LRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDV 220
LRR +E Y+ TRFA CN +KII +QSRC R+ L + RL +I+ E +
Sbjct: 140 LRRTMEMYSNTTRFAFACNDSSKIIEPIQSRCAMLRYTKLSDSEILARLLEIIKMESVIY 199
Query: 221 TEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNE 280
T+ GL A++ GDMR+A+N ++ TH +T E V+ P P I+ + +
Sbjct: 200 TDDGLEAIIFTAQGDMRQAINNVELTHKGFGSVTSENVFKVCDEPHPLLIKSMLENCVES 259
Query: 281 SFADSFKRISEMKMRKGLALVDIVREVTMFVFKIK-----MPSDVRVRLMNDLADIEYRL 335
F ++FK ++ + + G + DI+ +F++ +P +++R + ++ ++ R+
Sbjct: 260 KFNEAFKSLNNL-VAFGYSPEDIIG----IIFRVTKNHDGIPEFLKLRFIKEIGEVHMRI 314
Query: 336 SFGCNDKLQLGSIISTFTQARSA 358
G LQL +I +A A
Sbjct: 315 VDGLTTHLQLAGLIGRLCRASVA 337
>gi|224060747|ref|XP_002196271.1| PREDICTED: replication factor C subunit 4 [Taeniopygia guttata]
Length = 362
Score = 213 bits (541), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 128/332 (38%), Positives = 205/332 (61%), Gaps = 11/332 (3%)
Query: 32 SGTPPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTI 91
SG K PWVEKYRP+++ +VA ++V + + LP+LL YGPPGTGKTSTI
Sbjct: 27 SGEGKRAKPIPWVEKYRPKNVDEVAFQDEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTI 86
Query: 92 LAVARKLYGAQ-YHNMILELNASDDRGIDVVRQQIQDFA---STQSFSFG-VKASVKLVL 146
LA AR+L+G + +LELNASD+RGI V+R++++ FA ++ S S G + K+V+
Sbjct: 87 LAAARELFGPDLFRQRVLELNASDERGIQVIREKVKAFAQLTASGSRSDGKMCPPFKIVI 146
Query: 147 LDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVT 206
LDEAD+MT AQ ALRR +EK +K TRF LICN +++II L SRC++FRF PL
Sbjct: 147 LDEADSMTSAAQAALRRTMEKESKTTRFCLICNYISRIIEPLTSRCSKFRFKPLSDSIQQ 206
Query: 207 ERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTH--MASQQITEEAVYLCTGN 264
+RL V E E + ++ ++ LV++ GD+RKA+ LQS M ++ITE+ + G
Sbjct: 207 QRLLDVSEKEHVKISNEAISYLVKVSEGDLRKAITFLQSATRLMGGKEITEKIITEIAG- 265
Query: 265 PLPKD-IEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSD-VRV 322
+PK+ I+++ + SF + + +++ + +G A+ +V ++ + + + SD +
Sbjct: 266 VIPKETIDELLLGCQSGSF-EKLETLAKNLINEGFAVAQLVNQLHDTIVESEDYSDKQKS 324
Query: 323 RLMNDLADIEYRLSFGCNDKLQLGSIISTFTQ 354
++ LA+++ L+ G ++ LQL S+ + Q
Sbjct: 325 AIVEKLAEVDKCLADGADEFLQLMSLCALVMQ 356
>gi|320588439|gb|EFX00908.1| DNA replication factor c subunit [Grosmannia clavigera kw1407]
Length = 395
Score = 213 bits (541), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 105/215 (48%), Positives = 147/215 (68%), Gaps = 8/215 (3%)
Query: 39 KASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKL 98
+A PWVEKYRP++L+DV A V + R + LPH+L YGPPGTGKTSTILA+A++L
Sbjct: 31 RAQPWVEKYRPKTLSDVTAQDHTVTVLQRTLQASNLPHMLFYGPPGTGKTSTILALAKEL 90
Query: 99 YGAQY-HNMILELNASDDRGIDVVRQQIQDFASTQ--SFSFGVK-----ASVKLVLLDEA 150
YG ++ + +LELNASD+RGI +VR++++DFA Q + G + KL++LDEA
Sbjct: 91 YGPEFVKSRVLELNASDERGISIVREKVKDFARMQLTNPPPGYRDRYPCPPFKLIVLDEA 150
Query: 151 DAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLK 210
D+MT+DAQ ALRR +E Y+K TRF LICN V +II L SRC++FRF L+ + R++
Sbjct: 151 DSMTQDAQSALRRTMETYSKITRFCLICNYVTRIIDPLASRCSKFRFKSLDQGNARARVE 210
Query: 211 HVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQS 245
+ E + + G + AL+R GD+RKA+ LQS
Sbjct: 211 DIATREHVSLAPGAVDALIRCSEGDLRKAITFLQS 245
>gi|66802182|ref|XP_629875.1| replication factor C subunit [Dictyostelium discoideum AX4]
gi|74851260|sp|Q54E21.1|RFC2_DICDI RecName: Full=Probable replication factor C subunit 2; AltName:
Full=Activator 1 subunit 2
gi|60463272|gb|EAL61464.1| replication factor C subunit [Dictyostelium discoideum AX4]
Length = 338
Score = 213 bits (541), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 118/315 (37%), Positives = 178/315 (56%), Gaps = 14/315 (4%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP + D+ + + V ++ ++ + LP++++ GPPGTGKTS+IL +AR L GA
Sbjct: 21 PWVEKYRPILIKDIVGNEETVSRLESISKDGNLPNIIISGPPGTGKTSSILCLARALLGA 80
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQ-SFSFGVKASVKLVLLDEADAMTKDAQFA 160
Y + ELNASDDR +DVVR +I+ FA + + G K+++LDE D+MT AQ A
Sbjct: 81 NYKEAVYELNASDDRTLDVVRDKIKSFAMKKVTLPAGRH---KIIILDEVDSMTSGAQQA 137
Query: 161 LRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDV 220
LRR++E Y+ TRFA CNQ KII +QSRC RF L + RL+ V++ E +
Sbjct: 138 LRRIMEIYSGTTRFAFACNQSTKIIEPIQSRCAVLRFTRLSDSQILTRLREVVQIEKVPY 197
Query: 221 TEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNE 280
T+ GLAA++ GDMR+ALN LQ+TH I E V P P I+QI
Sbjct: 198 TDDGLAAIIFTAEGDMRQALNNLQATHSGFGLINAENVTKVCDQPHPLIIKQIIALCAKS 257
Query: 281 SFADSFKRISEMKMRKGLALVDIVREVTMFVFKI-----KMPSDVRVRLMNDLADIEYRL 335
F +++ + ++ G + +DI+ +F I +P ++ + ++ R
Sbjct: 258 DFKEAYPFLKKL-WDDGYSSIDIISA----LFSITKSSNNIPEYQKLEFLKEIGFCNLRA 312
Query: 336 SFGCNDKLQLGSIIS 350
+ G N +QL ++S
Sbjct: 313 TTGVNTLVQLTGLLS 327
>gi|91081833|ref|XP_974716.1| PREDICTED: similar to replication factor C, 37-kDa subunit,
putative [Tribolium castaneum]
gi|270006308|gb|EFA02756.1| hypothetical protein TcasGA2_TC008489 [Tribolium castaneum]
Length = 355
Score = 213 bits (541), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 107/212 (50%), Positives = 143/212 (67%), Gaps = 8/212 (3%)
Query: 40 ASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLY 99
A PWVEKYRP++++DV + V + + S LP+LL YGPPGTGKTSTILA AR+L+
Sbjct: 29 AVPWVEKYRPRTVSDVVEQSEAVSVLQQCISGADLPNLLFYGPPGTGKTSTILAAARQLF 88
Query: 100 GAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKAS------VKLVLLDEADAM 153
G Y + ILELNASD+RGI V+R +++ FA Q + G + K+V+LDEAD+M
Sbjct: 89 GDYYRDRILELNASDERGIQVIRDKVKTFA--QLTASGTRPDGKPCPPFKIVILDEADSM 146
Query: 154 TKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVI 213
T AQ ALRR +EK +++TRF LICN V++II L SRCT+FRF PL + ERL +
Sbjct: 147 THAAQAALRRTMEKESRSTRFCLICNYVSRIIEPLTSRCTKFRFKPLNEAMILERLSFIC 206
Query: 214 EAEGLDVTEGGLAALVRLCNGDMRKALNILQS 245
E ++ ++ LAALV GDMR+A+ LQS
Sbjct: 207 GKENVECSDKTLAALVETSGGDMRRAITSLQS 238
>gi|341582780|ref|YP_004763272.1| replication factor C small subunit [Thermococcus sp. 4557]
gi|340810438|gb|AEK73595.1| replication factor C small subunit [Thermococcus sp. 4557]
Length = 866
Score = 213 bits (541), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 102/266 (38%), Positives = 176/266 (66%), Gaps = 3/266 (1%)
Query: 88 TSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLL 147
T+ LA+AR+L+G + + LELNASD+RGI+V+R+++++FA T+ AS K++ L
Sbjct: 600 TTAALALARELFGENWRHNFLELNASDERGINVIREKVKEFARTKPIG---GASFKIIFL 656
Query: 148 DEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTE 207
DEADA+T+DAQ ALRR +E ++ N RF L CN +KII +QSRC FRF PL + +
Sbjct: 657 DEADALTQDAQQALRRTMEMFSNNVRFILSCNYSSKIIEPIQSRCAIFRFRPLNDEDIAK 716
Query: 208 RLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLP 267
R+K++ E EGL++TE GL A++ + GD+R+A+N+LQ+ ++IT+E V+L P
Sbjct: 717 RIKYIAEQEGLELTEEGLQAILYVAEGDLRRAINVLQAAAALDKKITDENVFLVASRARP 776
Query: 268 KDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMND 327
+D+ ++ L +F + ++ ++ +++GL+ D++ ++ VF + +P D +V L +
Sbjct: 777 EDVREMMTLALEGNFLKARDKLRDILLKQGLSGEDVLIQMHKEVFNLPIPEDRKVALADK 836
Query: 328 LADIEYRLSFGCNDKLQLGSIISTFT 353
+ + +RL G N+ +QL ++++ FT
Sbjct: 837 IGEYNFRLVEGANEMIQLEALLAQFT 862
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 27/53 (50%)
Query: 38 IKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTST 90
I PWVEKYRP L D+ IV + +PHLL GPPG GK T
Sbjct: 10 ILEKPWVEKYRPARLDDIVGQAHIVKRLKHYAKTGSMPHLLFAGPPGVGKCLT 62
>gi|367037019|ref|XP_003648890.1| hypothetical protein THITE_2106865 [Thielavia terrestris NRRL 8126]
gi|346996151|gb|AEO62554.1| hypothetical protein THITE_2106865 [Thielavia terrestris NRRL 8126]
Length = 358
Score = 213 bits (541), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 122/316 (38%), Positives = 183/316 (57%), Gaps = 16/316 (5%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP L DV + + ++ + + + +PHL++ G PG GKT+++L +AR+L G
Sbjct: 35 PWVEKYRPVFLDDVVGNTETIERLKIIARDGNMPHLIISGMPGIGKTTSVLCLARQLLGD 94
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQ-SFSFGVKASVKLVLLDEADAMTKDAQFA 160
Y +LELNASD+RGI+VVRQ+I+ FA + + G K+V+LDEAD+MT AQ A
Sbjct: 95 SYKEAVLELNASDERGIEVVRQRIKGFAQKKVTLPAGRH---KIVILDEADSMTSGAQQA 151
Query: 161 LRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDV 220
LRR +E Y+ TRFA CNQ NKII LQSRC RFA L V +RL +IEAE ++
Sbjct: 152 LRRTMEIYSNTTRFAFACNQSNKIIEPLQSRCAILRFAKLTDAQVVKRLLQIIEAEKVEY 211
Query: 221 TEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQI---SYWL 277
++ GLAALV GDMR+A+N LQSTH ++ + V+ +P P ++ + Y
Sbjct: 212 SDDGLAALVFSAEGDMRQAINNLQSTHAGFGFVSGDNVFKVVDSPHPIKVQAMLKACYEG 271
Query: 278 LNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPS---DVRVRLMNDLADIEYR 334
++ DS + + + G + DI+ TMF +P+ ++ + ++ +
Sbjct: 272 NIDAALDSLRELWNL----GYSSHDIIS--TMFKVTKTIPTLSEHAKLEFIKEIGFTHMK 325
Query: 335 LSFGCNDKLQLGSIIS 350
+ G LQL ++
Sbjct: 326 ILEGVQTLLQLSGCVA 341
>gi|328767253|gb|EGF77303.1| hypothetical protein BATDEDRAFT_91654 [Batrachochytrium
dendrobatidis JAM81]
Length = 326
Score = 213 bits (541), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 104/212 (49%), Positives = 142/212 (66%), Gaps = 2/212 (0%)
Query: 41 SPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYG 100
SPW E+YRP++L++++ ++V + LPHLLLYGPPGTGKTS ILA+AR+LYG
Sbjct: 8 SPWTERYRPKTLSEISGQNEVVAVLSNTIQTQNLPHLLLYGPPGTGKTSIILALARQLYG 67
Query: 101 AQ-YHNMILELNASDDRGIDVVRQQIQDFAS-TQSFSFGVKASVKLVLLDEADAMTKDAQ 158
A +LELNASD+RGIDV+R+++++FA T S + K+++LDEAD++T DAQ
Sbjct: 68 ANGLKGRLLELNASDERGIDVIREKVKNFAKITVSAAHSNAPPYKIIVLDEADSLTTDAQ 127
Query: 159 FALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGL 218
ALRR++E Y+K TRF LICN V++II L SRC + RF P+ V ERL+ + E L
Sbjct: 128 SALRRIMENYSKITRFCLICNYVSRIIDPLASRCAKLRFKPIPMPIVIERLELICSNEKL 187
Query: 219 DVTEGGLAALVRLCNGDMRKALNILQSTHMAS 250
G L L C GD+RKA+ +LQS S
Sbjct: 188 SFAPGALDFLATSCAGDLRKAITLLQSIKKVS 219
>gi|145250105|ref|XP_001396566.1| replication factor C subunit 4 [Aspergillus niger CBS 513.88]
gi|134082079|emb|CAK42196.1| unnamed protein product [Aspergillus niger]
Length = 352
Score = 213 bits (541), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 124/334 (37%), Positives = 187/334 (55%), Gaps = 11/334 (3%)
Query: 25 NGKNVIVSGTPPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPG 84
NG +G PPD + PWVEKYRP L D+ + + V+ + + + +PH+++ G PG
Sbjct: 13 NGLKAHTAGAPPDYEL-PWVEKYRPVYLDDIVGNTETVERLKIIAKDGNMPHVIISGMPG 71
Query: 85 TGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQ-SFSFGVKASVK 143
GKT++IL +AR+L G Y +LELNASD+RGIDVVR +I+ FA + + G K
Sbjct: 72 IGKTTSILCLARQLLGDAYKEAVLELNASDERGIDVVRNRIKGFAQKKVTLPPGRH---K 128
Query: 144 LVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPV 203
LV+LDEAD+MT AQ ALRR +E Y+ TRFA CNQ NKII +QSRC R+A L
Sbjct: 129 LVILDEADSMTSGAQQALRRTMEIYSSTTRFAFACNQSNKIIEPIQSRCAILRYARLTDA 188
Query: 204 HVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTG 263
+ +RLK V +AE ++ E G+AALV GDMR+A+N LQST ++ + V+
Sbjct: 189 QIVKRLKQVCDAEKVEHNEEGIAALVFSAEGDMRQAINNLQSTWSGFGFVSGDNVFRVVD 248
Query: 264 NPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPS---DV 320
+P P ++ + + + ++E+ G + DI+ TMF +P+
Sbjct: 249 SPHPIKVQAMIKACWEGKVDAALETLNEL-WELGYSSHDIIS--TMFRVTKTIPTLSEHS 305
Query: 321 RVRLMNDLADIEYRLSFGCNDKLQLGSIISTFTQ 354
++ + ++ R+ G LQL ++ +
Sbjct: 306 KLEFIREIGFTHMRILDGVQSLLQLSGCVAKLCR 339
>gi|388582885|gb|EIM23188.1| P-loop containing nucleoside triphosphate hydrolase protein
[Wallemia sebi CBS 633.66]
Length = 331
Score = 213 bits (541), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 112/271 (41%), Positives = 165/271 (60%), Gaps = 8/271 (2%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP+ L+D+ ++D V ++ + + +PH+++ G PG GKT+ +LA+A L G
Sbjct: 10 PWVEKYRPRVLSDIVGNQDTVKRLEVIAQDGNMPHMIMSGTPGIGKTTAVLALAHTLLGP 69
Query: 102 Q-YHNMILELNASDDRGIDVVRQQIQDFASTQ-SFSFGVKASVKLVLLDEADAMTKDAQF 159
+ +LELNASD+RGIDVVR +I+ FA + + G K+V+LDEAD+MT AQ
Sbjct: 70 DVFKEAVLELNASDERGIDVVRNRIKSFAQKKIALPPGRH---KIVILDEADSMTSGAQQ 126
Query: 160 ALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLD 219
ALRR +E Y+ TRFA CNQ NKII +QSRC RF+ L + + +RL+ + E E D
Sbjct: 127 ALRRTMEIYSNTTRFAFACNQSNKIIEPIQSRCAILRFSKLRDIELLQRLRQIAEKENAD 186
Query: 220 VTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLN 279
VT+ G AL+ GDMR+A+N LQSTH +T +AV+ P P ++ +
Sbjct: 187 VTDEGYEALIFTSEGDMRQAVNNLQSTHTGLGLVTPDAVFKVCDQPHPLLVQNLLESCHK 246
Query: 280 ESFADSFKRISEMKMRKGLALVDIVREVTMF 310
D+ ++ E+ G A +DI++ T+F
Sbjct: 247 ADIEDALSKLDEL-WTHGYAAIDIIQ--TLF 274
>gi|294461526|gb|ADE76324.1| unknown [Picea sitchensis]
gi|294463669|gb|ADE77361.1| unknown [Picea sitchensis]
Length = 335
Score = 213 bits (541), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 113/298 (37%), Positives = 177/298 (59%), Gaps = 5/298 (1%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP ++D+ ++D + + + + +P+L+L GPPGTGKT++ILA+A +L G+
Sbjct: 18 PWVEKYRPSKVSDIVGNQDALSRLQVIARDGNMPNLILAGPPGTGKTTSILALAHELLGS 77
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQ-SFSFGVKASVKLVLLDEADAMTKDAQFA 160
Y ++ELNASDDRGIDVVR +I+ FA + + G K+++LDEAD+MT AQ A
Sbjct: 78 NYKEGVIELNASDDRGIDVVRNKIKMFAQKKVTLPPGRH---KIIILDEADSMTGGAQQA 134
Query: 161 LRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDV 220
LRR +E ++ +TRFAL CN KII +QSRC RF+ L + RL V+EAE +
Sbjct: 135 LRRTMEIFSNSTRFALACNTSAKIIEPIQSRCAIVRFSKLSDQEILGRLMRVVEAEKVAY 194
Query: 221 TEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNE 280
GL A++ +GDMR+ALN LQ+T+ Q + +E V+ P P ++ + +L
Sbjct: 195 VPEGLEAIIFTADGDMRQALNNLQATYSGFQFVNQENVFKVCDQPHPLHVKSMVQNVLEG 254
Query: 281 SFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFG 338
+F ++ R+ + G + DI+ + + MP +++ + + R+S G
Sbjct: 255 NFDEACSRLKNL-YDLGYSATDIITTLFRVIKNYDMPEYLKLEFIRETGFAHMRISDG 311
>gi|45187984|ref|NP_984207.1| ADR111Wp [Ashbya gossypii ATCC 10895]
gi|44982768|gb|AAS52031.1| ADR111Wp [Ashbya gossypii ATCC 10895]
gi|374107422|gb|AEY96330.1| FADR111Wp [Ashbya gossypii FDAG1]
Length = 321
Score = 213 bits (541), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 124/319 (38%), Positives = 185/319 (57%), Gaps = 11/319 (3%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP+ L DV + + V+ + ++ + +PH+++ G PG GKT++I +A +L G
Sbjct: 11 PWVEKYRPKLLKDVVGNDETVERLQQIARDGNMPHMIISGLPGIGKTTSIHCLAHELLGD 70
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFAL 161
Y +LELNASDDRGIDVVR QI+ FA + K K+++LDEAD+MT AQ AL
Sbjct: 71 AYSQAVLELNASDDRGIDVVRNQIKQFAQKKCTLPPGKH--KIIILDEADSMTSGAQQAL 128
Query: 162 RRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVT 221
RR +E Y+ TRFA CNQ NKII LQSRC R++ L V +RL +I+AE + T
Sbjct: 129 RRTMELYSNTTRFAFACNQSNKIIEPLQSRCAILRYSKLSDEQVLKRLFEIIKAENVQYT 188
Query: 222 EGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNES 281
GL AL+ GDMR+A+N LQST + + V+ +P P I+++ LL+ +
Sbjct: 189 NDGLEALIFTAEGDMRQAINNLQSTVAGFTLVNGDNVFKIVDSPHPLVIKKM---LLSAT 245
Query: 282 FADSFKRISEMKMRKGLALVDIVR---EVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFG 338
+S + E+ KG + VDI+ V + +IK P +R+ ++ ++ R+ G
Sbjct: 246 LDESLNYLREL-WGKGYSAVDIITTCFRVMKNLTEIKEP--LRLEMIKEIGFTHMRILEG 302
Query: 339 CNDKLQLGSIISTFTQARS 357
LQL ++ Q ++
Sbjct: 303 VGTYLQLCGALARIHQLKT 321
>gi|255537345|ref|XP_002509739.1| replication factor C / DNA polymerase III gamma-tau subunit,
putative [Ricinus communis]
gi|223549638|gb|EEF51126.1| replication factor C / DNA polymerase III gamma-tau subunit,
putative [Ricinus communis]
Length = 333
Score = 212 bits (540), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 118/322 (36%), Positives = 181/322 (56%), Gaps = 5/322 (1%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP + D+ + D V + + + +P+L+L GPPGTGKT++ILA+A +L G
Sbjct: 16 PWVEKYRPSKICDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGP 75
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQ-SFSFGVKASVKLVLLDEADAMTKDAQFA 160
Y +LELNASDDRGIDVVR +I+ FA + + G K+V+LDEAD+MT AQ A
Sbjct: 76 NYKEAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRH---KVVILDEADSMTSGAQQA 132
Query: 161 LRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDV 220
LRR +E Y+ +TRFAL CN +KII +QSRC RF+ L + RL V++AE +
Sbjct: 133 LRRTMEIYSNSTRFALACNTSSKIIEPIQSRCALVRFSRLSDQEILGRLIIVVQAEKVPY 192
Query: 221 TEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNE 280
GL A++ +GDMR+ALN LQ+T+ + + +E V+ P P ++ + ++
Sbjct: 193 VPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRHVMEG 252
Query: 281 SFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCN 340
+ D+ + ++ G + DI+ + + M +++ M + R+ G
Sbjct: 253 KYDDACSGLKQL-YDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAHMRICDGVG 311
Query: 341 DKLQLGSIISTFTQARSAIVAA 362
LQL +++ R AA
Sbjct: 312 SYLQLCGLLAKLALVRDTARAA 333
>gi|15221697|ref|NP_176504.1| replication factor C 2 [Arabidopsis thaliana]
gi|12323266|gb|AAG51618.1|AC010795_22 replication factor, putative; 74998-73295 [Arabidopsis thaliana]
gi|182623790|gb|ACB88833.1| At1g63160 [Arabidopsis thaliana]
gi|332195942|gb|AEE34063.1| replication factor C 2 [Arabidopsis thaliana]
Length = 333
Score = 212 bits (540), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 121/319 (37%), Positives = 177/319 (55%), Gaps = 11/319 (3%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP + D+ + D V + + + +P+L+L GPPGTGKT++ILA+A +L G
Sbjct: 16 PWVEKYRPSKVVDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGT 75
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQ-SFSFGVKASVKLVLLDEADAMTKDAQFA 160
Y +LELNASDDRGIDVVR +I+ FA + + G K+V+LDEAD+MT AQ A
Sbjct: 76 NYKEAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRH---KVVILDEADSMTSGAQQA 132
Query: 161 LRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDV 220
LRR IE Y+ +TRFAL CN KII +QSRC RF+ L + RL V+ AE +
Sbjct: 133 LRRTIEIYSNSTRFALACNTSAKIIEPIQSRCALVRFSRLSDQQILGRLLVVVAAEKVPY 192
Query: 221 TEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNE 280
GL A++ +GDMR+ALN LQ+T + +E V+ P P ++ I +L
Sbjct: 193 VPEGLEAIIFTADGDMRQALNNLQATFSGFSFVNQENVFKVCDQPHPLHVKNIVRNVLES 252
Query: 281 SF---ADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSF 337
F D K++ ++ G + DI+ + + M +++ M + R+
Sbjct: 253 KFDIACDGLKQLYDL----GYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAHMRICD 308
Query: 338 GCNDKLQLGSIISTFTQAR 356
G LQL +++ + R
Sbjct: 309 GVGSYLQLCGLLAKLSIVR 327
>gi|358389695|gb|EHK27287.1| hypothetical protein TRIVIDRAFT_82171 [Trichoderma virens Gv29-8]
Length = 357
Score = 212 bits (540), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 121/313 (38%), Positives = 179/313 (57%), Gaps = 10/313 (3%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP L DV + + ++ + + E +PH+++ G PG GKT+++L +AR+L G
Sbjct: 34 PWVEKYRPVFLDDVVGNTETIERLKIIAKEGNMPHVIISGMPGIGKTTSVLCLARQLLGE 93
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQ-SFSFGVKASVKLVLLDEADAMTKDAQFA 160
Y +LELNASD+RGIDVVR +I+ FA + + G KLV+LDEAD+MT AQ A
Sbjct: 94 SYKEAVLELNASDERGIDVVRNRIKGFAQKKVTLPAGRH---KLVILDEADSMTSGAQQA 150
Query: 161 LRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDV 220
LRR +E Y+ TRFA CNQ NKII LQSRC R+A L V +RL +IEAE ++
Sbjct: 151 LRRTMEIYSNTTRFAFACNQSNKIIEPLQSRCAILRYAKLTDEQVVKRLMQIIEAEKVEY 210
Query: 221 TEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNE 280
++ GLAALV GDMR+A+N LQST ++ + V+ +P P ++ +
Sbjct: 211 SDDGLAALVFSAEGDMRQAINNLQSTWAGFGFVSGDNVFKVVDSPHPIKVQAMLKACYEG 270
Query: 281 SFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPS---DVRVRLMNDLADIEYRLSF 337
+ + + E+ KG + DI+ TMF MP+ ++ + ++ ++
Sbjct: 271 NVDSALDTLREL-WDKGYSSHDIIS--TMFKVTKTMPTLSEHSKLEFIKEIGFTHMKILE 327
Query: 338 GCNDKLQLGSIIS 350
G LQL ++
Sbjct: 328 GVQTLLQLSGCVA 340
>gi|50552766|ref|XP_503793.1| YALI0E10747p [Yarrowia lipolytica]
gi|49649662|emb|CAG79384.1| YALI0E10747p [Yarrowia lipolytica CLIB122]
Length = 378
Score = 212 bits (540), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 109/231 (47%), Positives = 150/231 (64%), Gaps = 13/231 (5%)
Query: 23 KDNGKNVIVSGTPPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGP 82
K +GK + PP PWVEKYRP+SL DV++ V + R LPH+L YGP
Sbjct: 13 KADGKKTSKNKAPP-----PWVEKYRPKSLDDVSSQDHAVTVLKRTLGSANLPHMLFYGP 67
Query: 83 PGTGKTSTILAVARKLYGAQ-YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKAS 141
PGTGKTST+LA+A++LYG + + +LELNASD+RGI +VR I++FA+ + + +
Sbjct: 68 PGTGKTSTVLALAKELYGPELMKDRVLELNASDERGIAIVRDSIKNFAAQKVVAPKDHIA 127
Query: 142 -------VKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTR 194
K+++LDEAD+MT DAQ ALRR +E Y+ TRF LICN V +II L SRC++
Sbjct: 128 EKYPCPPFKIIILDEADSMTTDAQSALRRTMETYSAQTRFCLICNYVTRIIDPLASRCSK 187
Query: 195 FRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQS 245
FRF L+ RL+HV +AE L V +G L ++ + NGD+R+A+ ILQS
Sbjct: 188 FRFRLLDGNDALARLRHVSDAEQLSVEDGVLEKILEVANGDLRRAITILQS 238
>gi|324500315|gb|ADY40152.1| Replication factor C subunit 2 [Ascaris suum]
Length = 364
Score = 212 bits (540), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 119/310 (38%), Positives = 179/310 (57%), Gaps = 5/310 (1%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PW+EKYRPQ L DV ++ + + + LP++++ GPPG GKT++I A+AR+L G
Sbjct: 47 PWLEKYRPQKLQDVVGNKLAIQRLGMFAKQGNLPNIVISGPPGCGKTTSIWALARELLGT 106
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQ-SFSFGVKASVKLVLLDEADAMTKDAQFA 160
Q LELNASDDRGIDVVR +I+ FA T+ S G K+++LDEAD+MT+ AQ A
Sbjct: 107 QIREACLELNASDDRGIDVVRNKIKSFAQTKVSLPEGRH---KIIILDEADSMTEGAQQA 163
Query: 161 LRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDV 220
LRR +E Y+K TRFAL CNQ +KII +QSRC RF+ L+ + RL V E +
Sbjct: 164 LRRTMEIYSKTTRFALSCNQSDKIIEPIQSRCAILRFSKLKDEEIATRLLQVCTYEQVVY 223
Query: 221 TEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNE 280
E G+ AL+ GDMR+ALN LQ T +Q+T + V+ P P+ I+++ + E
Sbjct: 224 DESGIDALIFTAQGDMRQALNNLQCTVAGFKQVTADNVFKVCDEPHPEMIKKMLELCVRE 283
Query: 281 SFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCN 340
++ I + + G + DI+ + +P +++ + ++ + R+ G
Sbjct: 284 KVNEA-TEIMQHLYKMGYSPEDILSNMFRVCKSANIPEYLKMEYIKEIGNCHVRVVEGVA 342
Query: 341 DKLQLGSIIS 350
LQL +I+
Sbjct: 343 SLLQLSGLIA 352
>gi|363750179|ref|XP_003645307.1| hypothetical protein Ecym_2792 [Eremothecium cymbalariae
DBVPG#7215]
gi|356888940|gb|AET38490.1| Hypothetical protein Ecym_2792 [Eremothecium cymbalariae
DBVPG#7215]
Length = 319
Score = 212 bits (540), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 122/318 (38%), Positives = 185/318 (58%), Gaps = 11/318 (3%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRPQ L D+ + +IV+ + ++ + +PH+++ G PG GKT++I +A +L G
Sbjct: 10 PWVEKYRPQLLKDIVGNEEIVERLQQIAYDGNMPHMIISGLPGIGKTTSIHCIAHELLGD 69
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFAL 161
Y +LELNASDDRGIDVVR QI+ FA + K K+++LDEAD+MT AQ AL
Sbjct: 70 SYSQAVLELNASDDRGIDVVRNQIKQFAQKKCTLPPGKH--KIIILDEADSMTSGAQQAL 127
Query: 162 RRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVT 221
RR +E Y+ +TRFA CNQ NKII LQSRC R++ L V +RL +I+ E + T
Sbjct: 128 RRTMEIYSSSTRFAFACNQSNKIIEPLQSRCAILRYSKLSDEQVLKRLLEIIKLEDVKYT 187
Query: 222 EGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNES 281
GL A++ GDMR+A+N LQST + + V+ +P P ++++ LL S
Sbjct: 188 NDGLEAIIFTAEGDMRQAINNLQSTVAGFGLVNGDNVFKIVDSPHPLVVKKM---LLANS 244
Query: 282 FADSFKRISEMKMRKGLALVDIVREVTMF-VFK--IKMPSDVRVRLMNDLADIEYRLSFG 338
+S + ++ KG + VDI+ T F V K ++ +R+ ++ ++ R+ G
Sbjct: 245 LDESLTYLKDL-WNKGYSAVDII--TTCFRVMKNLAEIKEHIRLEIIKEIGFTHMRILEG 301
Query: 339 CNDKLQLGSIISTFTQAR 356
LQL + ++ + R
Sbjct: 302 VGTYLQLSATLAKVHRLR 319
>gi|405124075|gb|AFR98837.1| activator 1 41 kda subunit [Cryptococcus neoformans var. grubii
H99]
Length = 363
Score = 212 bits (539), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 104/221 (47%), Positives = 148/221 (66%), Gaps = 10/221 (4%)
Query: 37 DIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVAR 96
D K PWVEKYRP+++ DV++ + V + + + LPH+L YGPPGTGKTSTILA+AR
Sbjct: 14 DPKLQPWVEKYRPKTIDDVSSQDNTVAVLRKALASTNLPHMLFYGPPGTGKTSTILALAR 73
Query: 97 KLYGAQ-YHNMILELNASDDRGIDVVRQQIQDFA-STQSFSFGVKA--------SVKLVL 146
+L+G + +LELNASD+RGI VVR++I+ FA T + G+ + KL++
Sbjct: 74 QLFGPDLFRARVLELNASDERGISVVREKIKSFARETPRHAPGISSDGKEYPCPPFKLII 133
Query: 147 LDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVT 206
LDEAD+MT+DAQ ALRR++E Y+K TRF L+CN V +II L SRC++FRF PLE
Sbjct: 134 LDEADSMTQDAQSALRRIMETYSKITRFCLVCNYVTRIIEPLASRCSKFRFKPLEQGSTR 193
Query: 207 ERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTH 247
R++ + E EG+ G ++ ++ L GD+RKA+ LQ+
Sbjct: 194 ARMEMIAENEGVQTDPGVISLILELAGGDLRKAITYLQTAQ 234
>gi|320169797|gb|EFW46696.1| replication factor C subunit 4 [Capsaspora owczarzaki ATCC 30864]
Length = 347
Score = 212 bits (539), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 122/327 (37%), Positives = 190/327 (58%), Gaps = 12/327 (3%)
Query: 41 SPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYG 100
+PWVEKYRP+++ +VA ++V + + + N PHLL YGPPGTGKTSTILA+AR+++G
Sbjct: 23 TPWVEKYRPRTVDEVAFQDEVVAVLKKSLTSNDFPHLLFYGPPGTGKTSTILAIARQMFG 82
Query: 101 AQ-YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKAS-VKLVLLDEADAMTKDAQ 158
+ ILELNASD+RGI VVR++++ + +G K+++LDEAD+MT DAQ
Sbjct: 83 PELMKTRILELNASDERGISVVREKVKTLHQSLRLKWGYPCPPFKIIILDEADSMTADAQ 142
Query: 159 FALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGL 218
ALRR++E Y+K TRF LICN V++II L SRC +FRF PL+ +TE+L + + EGL
Sbjct: 143 SALRRMMETYSKTTRFCLICNYVSRIIEPLASRCAKFRFKPLDAGILTEKLTAIGDKEGL 202
Query: 219 DVTEGGLAALVRLCNGDMRKALNILQSTHM--ASQQITEEAVYLCTGNPLPKDIEQISYW 276
+ + L GDMR+A+ ++Q S IT + V G +P D+ +
Sbjct: 203 QIDASAINQLTAASGGDMRRAITLMQCCFRLNGSDPITADDVVAAAGV-VPDDMIRK--- 258
Query: 277 LLNESFADSFKRIS----EMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIE 332
L E + SF+++ E++ A + + F+ + M + + A+ +
Sbjct: 259 LWKECASGSFEKVQAAVKEIEASGFSAEQVLSQAFEQFLARPDMTDAQKSAIALAFANSD 318
Query: 333 YRLSFGCNDKLQLGSIISTFTQARSAI 359
+L G ++ LQL S+ S+ + S +
Sbjct: 319 RQLVDGADESLQLLSVFSSTMETLSVV 345
>gi|367024189|ref|XP_003661379.1| hypothetical protein MYCTH_2300696 [Myceliophthora thermophila ATCC
42464]
gi|347008647|gb|AEO56134.1| hypothetical protein MYCTH_2300696 [Myceliophthora thermophila ATCC
42464]
Length = 356
Score = 212 bits (539), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 121/315 (38%), Positives = 183/315 (58%), Gaps = 14/315 (4%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP L D+ + + V+ + + + +PHL++ G PG GKT+++L +AR+L G
Sbjct: 33 PWVEKYRPVFLDDIVGNTETVERLKIIARDGNMPHLIISGMPGIGKTTSVLCLARQLLGD 92
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFAL 161
Y +LELNASD+RGI+VVRQ+I+ FA Q + K+V+LDEAD+MT AQ AL
Sbjct: 93 AYKEAVLELNASDERGIEVVRQRIKGFA--QKKVTLPQGRHKIVILDEADSMTSGAQQAL 150
Query: 162 RRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVT 221
RR +E Y+ TRFA CNQ NKII LQSRC R+A L V +RL +IEAE ++ +
Sbjct: 151 RRTMEIYSNTTRFAFACNQSNKIIEPLQSRCAILRYAKLTDAQVVKRLLQIIEAEKVEYS 210
Query: 222 EGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQI---SYWLL 278
+ GLAALV GDMR+A+N LQSTH ++ + V+ +P P ++ + Y
Sbjct: 211 DDGLAALVFTAEGDMRQAINNLQSTHAGFGFVSGDNVFKVVDSPHPIKVQAMLKACYEGN 270
Query: 279 NESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPS---DVRVRLMNDLADIEYRL 335
+S D+ + + ++ G + DI+ TMF +P+ ++ + ++ ++
Sbjct: 271 IDSALDTLRELWDL----GYSSHDIIS--TMFKVTKTIPTLSEHAKLEFIKEIGFTHMKI 324
Query: 336 SFGCNDKLQLGSIIS 350
G LQL ++
Sbjct: 325 LEGVQTLLQLSGCVA 339
>gi|156383785|ref|XP_001633013.1| predicted protein [Nematostella vectensis]
gi|156220077|gb|EDO40950.1| predicted protein [Nematostella vectensis]
Length = 357
Score = 212 bits (539), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 130/339 (38%), Positives = 197/339 (58%), Gaps = 23/339 (6%)
Query: 31 VSGTPPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTST 90
V+G+ K+SPWVEKYRP+ + DVA ++V + + LP+LL YGPPGTGKTST
Sbjct: 21 VAGSLGKQKSSPWVEKYRPKCVDDVAQQEEVVMVLKKSLEGADLPNLLFYGPPGTGKTST 80
Query: 91 ILAVARKLYGAQYHNM----ILELNASDDRGIDVVRQQIQDF----ASTQSFSFGVKASV 142
ILAVAR+LYG H M +LELNASD+RGI V+R +++ F AS
Sbjct: 81 ILAVARELYG---HEMLKQRVLELNASDERGIQVIRDKVKTFSQLSASASRPDGKPCPPF 137
Query: 143 KLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEP 202
KLV+LDEAD+MT AQ ALRR +EK TK TRF LICN V++II L SRC++FRF PL
Sbjct: 138 KLVILDEADSMTPSAQAALRRTMEKQTKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSS 197
Query: 203 VHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMA---SQQITEEAVY 259
+ RLK + E ++ + + ++++ GDMRKA+ LQS H S + E+ +
Sbjct: 198 EILERRLKEICVKEEVNCEDKAIDEVIKISEGDMRKAITFLQSAHRLKGDSGIVAEDIIE 257
Query: 260 LCTGNPLPKDIEQISYWLLNESFADSFKRISEMK---MRKGLALVDIVREVTMFVFKIKM 316
+ P + + L + S +DS++++ + + +G A ++ +V + +++
Sbjct: 258 IAGAIP-----DNLIKSLFDASRSDSYQKLEGVVKEIIAEGHAASQLIGQVHDQIVQMED 312
Query: 317 PSD-VRVRLMNDLADIEYRLSFGCNDKLQLGSIISTFTQ 354
+D + +M +A ++ L G ++ LQ+ S+ S Q
Sbjct: 313 LNDHQKSAIMEKIAIVDKCLIDGADEYLQVLSMCSVMMQ 351
>gi|358375659|dbj|GAA92238.1| activator 1 37 kDa subunit [Aspergillus kawachii IFO 4308]
Length = 352
Score = 212 bits (539), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 124/334 (37%), Positives = 187/334 (55%), Gaps = 11/334 (3%)
Query: 25 NGKNVIVSGTPPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPG 84
NG +G PPD + PWVEKYRP L D+ + + V+ + + + +PH+++ G PG
Sbjct: 13 NGLKAHTAGAPPDYEL-PWVEKYRPVFLDDIVGNTETVERLKIIAKDGNMPHVIISGMPG 71
Query: 85 TGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQ-SFSFGVKASVK 143
GKT++IL +AR+L G Y +LELNASD+RGIDVVR +I+ FA + + G K
Sbjct: 72 IGKTTSILCLARQLLGDAYKEAVLELNASDERGIDVVRNRIKGFAQKKVTLPPGRH---K 128
Query: 144 LVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPV 203
LV+LDEAD+MT AQ ALRR +E Y+ TRFA CNQ NKII +QSRC R+A L
Sbjct: 129 LVILDEADSMTSGAQQALRRTMEIYSSTTRFAFACNQSNKIIEPIQSRCAILRYARLTDA 188
Query: 204 HVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTG 263
+ +RLK V +AE ++ E G+AALV GDMR+A+N LQST ++ + V+
Sbjct: 189 QIVKRLKQVCDAEKVEHNEEGIAALVFSAEGDMRQAINNLQSTWSGFGFVSGDNVFRVVD 248
Query: 264 NPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPS---DV 320
+P P ++ + + + ++E+ G + DI+ TMF +P+
Sbjct: 249 SPHPIKVQAMIKACWEGKIDAALETLNEL-WDLGYSSHDIIS--TMFRVTKTIPTLSEHS 305
Query: 321 RVRLMNDLADIEYRLSFGCNDKLQLGSIISTFTQ 354
++ + ++ R+ G LQL ++ +
Sbjct: 306 KLEFIREIGFTHMRILDGVQSLLQLSGCVAKLCK 339
>gi|258571379|ref|XP_002544493.1| activator 1 subunit 3 [Uncinocarpus reesii 1704]
gi|237904763|gb|EEP79164.1| activator 1 subunit 3 [Uncinocarpus reesii 1704]
Length = 293
Score = 212 bits (539), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 118/268 (44%), Positives = 165/268 (61%), Gaps = 27/268 (10%)
Query: 104 HNMILELNASDDRGIDVVRQQIQDFASTQ---SFSFGVKA-----SVKLVLLDEADAMTK 155
M+LELNASDDRGIDVVR+QI+ FAST+ S S G ++ + KL++LDEADAMT
Sbjct: 2 RQMVLELNASDDRGIDVVREQIKTFASTKQIFSMSAGGQSDSKLGAFKLIILDEADAMTA 61
Query: 156 DAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEA 215
AQ ALRR++EKYT NTRF +I N +K+ PAL SRCTRFRF+PL+ + + HVI+
Sbjct: 62 TAQMALRRIMEKYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKEQDIRVLVDHVIDK 121
Query: 216 EGLDVTEGGLAALVRLCNGDMRKALNILQSTHMAS------------------QQITEEA 257
E + + + +LV+L GDMR+ALN+LQ+ H +S + IT+E
Sbjct: 122 EQVRIHPDAIDSLVKLSKGDMRRALNVLQACHASSIPLPLRNVPKDQQPAREPEMITDET 181
Query: 258 VYLCTGNPLPKDIEQISYWLLNESFADS-FKRISEMKMRKGLALVDIVREVTMFVFKIKM 316
+Y C P P DI I LL+ S S I +K KGLAL DI+ ++ + +I++
Sbjct: 182 IYTCIAAPRPSDIRTIMETLLSTSDVTSCLNTIQTLKTSKGLALADILTGLSNELQQIEV 241
Query: 317 PSDVRVRLMNDLADIEYRLSFGCNDKLQ 344
P+ R+ M LAD+E+RL+ G + +Q
Sbjct: 242 PAQTRIAWMEGLADVEWRLAGGGAEAIQ 269
>gi|371945111|gb|AEX62932.1| putative replication factor C small subunit [Moumouvirus Monve]
Length = 346
Score = 212 bits (539), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 115/304 (37%), Positives = 179/304 (58%), Gaps = 9/304 (2%)
Query: 39 KASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKL 98
K PW EKYRP+ + + +H+ I ++ LPHLL +GP G+GKTSTI A KL
Sbjct: 17 KNIPWTEKYRPRDIDQIISHKQITRSLKNFIKSKTLPHLLFFGPSGSGKTSTIKCCAAKL 76
Query: 99 YGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSF---GVKASVKLVLLDEADAMTK 155
YG+ + MILELNAS++RGI+ VR +I++F S ++ F ++ KLV+LDE D+MT
Sbjct: 77 YGSYLNCMILELNASNERGIETVRTKIKNFVSNKNSIFLPPELRNIFKLVILDEIDSMTV 136
Query: 156 DAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEA 215
+AQ LR+ IEK + TRF LICN ++KI ALQSRC FRF+PL + +RLK + +
Sbjct: 137 EAQGMLRQTIEKNSSTTRFCLICNDIDKINLALQSRCALFRFSPLNNNEMHKRLKDICDI 196
Query: 216 EGLDVTEGGLAALVRLCNGDMRKALNILQSTHM-ASQQITEEAVYLCTGNPLPKDIEQIS 274
E + + G + A++ + GDMR A+N LQ ++ + IT VY +G+ +P+ I +I
Sbjct: 197 ENVKYSTGVIDAVINISKGDMRSAINTLQHVNLTVNDLITVNDVYKISGHCMPELILEIF 256
Query: 275 YWLLNESFADS-----FKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLA 329
LL S ++I + + + + +++ E+ V + D ++ L+++ A
Sbjct: 257 NILLQLSKKKKDLDKYVEKIINIVVENNITIFNLLSELKNIVLDSDLLDDQKIFLIDNFA 316
Query: 330 DIEY 333
EY
Sbjct: 317 KNEY 320
>gi|115459988|ref|NP_001053594.1| Os04g0569000 [Oryza sativa Japonica Group]
gi|38344372|emb|CAE02250.2| OSJNBb0032E06.6 [Oryza sativa Japonica Group]
gi|113565165|dbj|BAF15508.1| Os04g0569000 [Oryza sativa Japonica Group]
Length = 335
Score = 212 bits (539), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 122/335 (36%), Positives = 188/335 (56%), Gaps = 8/335 (2%)
Query: 32 SGTPPDIKAS---PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKT 88
S + PD+ + PWVEKYRP +ADV + D V + + + +P+L+L GPPGTGKT
Sbjct: 5 SSSAPDLADAYDIPWVEKYRPTRVADVGGNSDAVARLQDIARDGNMPNLILSGPPGTGKT 64
Query: 89 STILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQ-SFSFGVKASVKLVLL 147
++IL++A +L G Y +LELNASDDRG+DVVR +I+ FA + + G K+V+L
Sbjct: 65 TSILSLAHELLGPSYREAVLELNASDDRGLDVVRNKIKMFAQKKVTLQPGRH---KIVIL 121
Query: 148 DEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTE 207
DEAD+MT AQ ALRR +E Y+ TRFAL CN +KII +QSRC RF+ L +
Sbjct: 122 DEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLSDQEILG 181
Query: 208 RLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLP 267
RL V+ AE + GL A++ +GDMR+ALN LQ+T + + +E V+ P P
Sbjct: 182 RLMIVVAAEKVPYVPEGLEAIIFTADGDMRQALNNLQATVSGFRFVNQENVFKVCDQPHP 241
Query: 268 KDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMND 327
++ + +L+ F ++ + ++ G + DI+ + + M +++ L+ +
Sbjct: 242 LHVKNMVKNVLDGKFDEACSALKQL-YDLGYSPTDIITTLFRVIKNYDMAEYLKLELLKE 300
Query: 328 LADIEYRLSFGCNDKLQLGSIISTFTQARSAIVAA 362
R+ G LQL +++ F R A+
Sbjct: 301 TGFAHMRICDGVGSFLQLSGLLAKFALVRETAKAS 335
>gi|448098395|ref|XP_004198917.1| Piso0_002311 [Millerozyma farinosa CBS 7064]
gi|359380339|emb|CCE82580.1| Piso0_002311 [Millerozyma farinosa CBS 7064]
Length = 360
Score = 212 bits (539), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 104/216 (48%), Positives = 145/216 (67%), Gaps = 8/216 (3%)
Query: 38 IKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARK 97
I+ +PWVEKYRP++L +VA+ V + + LPH+L YGPPGTGKTSTILA+A++
Sbjct: 15 IEHTPWVEKYRPKNLDEVASQEHTVKILKKTLESANLPHMLFYGPPGTGKTSTILALAKQ 74
Query: 98 LYGAQ-YHNMILELNASDDRGIDVVRQQIQDFA-------STQSFSFGVKASVKLVLLDE 149
LYG + + + +LELNASD+RGI +VRQ++++FA S + KL++LDE
Sbjct: 75 LYGPRLFKSRVLELNASDERGISIVRQKVKNFARLAVSNASKEDLENYPCPPYKLIILDE 134
Query: 150 ADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERL 209
AD+MT DAQ ALRR IE Y+ TRF LICN + +II L SRC++FRF L + R+
Sbjct: 135 ADSMTNDAQSALRRTIENYSGVTRFCLICNYITRIIDPLSSRCSKFRFGLLNNENALSRI 194
Query: 210 KHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQS 245
K+++E E L+V E L+ + NGD+RKA+ LQS
Sbjct: 195 KYIVEKENLNVDEDVPETLLSISNGDLRKAITFLQS 230
>gi|350591807|ref|XP_003483338.1| PREDICTED: replication factor C subunit 4-like [Sus scrofa]
Length = 364
Score = 212 bits (539), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 129/331 (38%), Positives = 198/331 (59%), Gaps = 9/331 (2%)
Query: 32 SGTPPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTI 91
SG K PWVEKYRP+ + +VA ++V + + LP+LL YGPPGTGKTSTI
Sbjct: 29 SGENKKAKPVPWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTI 88
Query: 92 LAVARKLYGAQYHNM-ILELNASDDRGIDVVRQQIQDFAS---TQSFSFGVKAS-VKLVL 146
LA AR+L+G + + +LELNASD+RGI VVR+++++FA + S S G K+V+
Sbjct: 89 LAAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPPFKIVI 148
Query: 147 LDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVT 206
LDEAD+MT AQ ALRR +EK +K TRF LICN V++II L SRC++FRF PL
Sbjct: 149 LDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQ 208
Query: 207 ERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTH--MASQQITEEAVYLCTGN 264
+RL + + E + +++ G+A LV++ GD+RKA+ LQS +++TE+ + G
Sbjct: 209 QRLLDIADKEHVKISDEGIAYLVKVSEGDLRKAITFLQSATRLTGGKEVTEKMITDIAGV 268
Query: 265 PLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRL 324
+ I+ + + SF D + + + + +G A V ++ V + SD + +
Sbjct: 269 IPTETIDGVLAACQSGSF-DKLEAVVKDLIDEGHAATQFVNQLHDVVVENDNLSDKQKSV 327
Query: 325 MND-LADIEYRLSFGCNDKLQLGSIISTFTQ 354
+ + LA+ + L+ G ++ LQL S+ +T Q
Sbjct: 328 ITEKLAEADKCLADGADEHLQLISLCATVMQ 358
>gi|388855091|emb|CCF51222.1| probable RFC4-DNA replication factor C, 37 kDa subunit [Ustilago
hordei]
Length = 343
Score = 212 bits (539), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 117/315 (37%), Positives = 180/315 (57%), Gaps = 6/315 (1%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP L DV +RD +D + + ++ PHLL+ G PG GKT+++L +AR L G
Sbjct: 23 PWVEKYRPLRLDDVVGNRDTIDRLKVIQNDGNCPHLLISGLPGIGKTTSVLCLARALLGD 82
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQ-SFSFGVKASVKLVLLDEADAMTKDAQFA 160
Y +LELNASD+RG+D+VR +I++FA + S G K+V+LDEAD+MT AQ A
Sbjct: 83 AYKEGVLELNASDERGVDIVRNKIKNFAQKKVSLPPGRH---KIVILDEADSMTPAAQQA 139
Query: 161 LRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDV 220
LRR +E Y+ TRF CNQ NKII +QSRC R+A + + +RL + + EG++
Sbjct: 140 LRRTMEIYSNTTRFCFACNQSNKIIEPIQSRCAILRYAKIRDEQILKRLLEICKMEGVEY 199
Query: 221 TEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNE 280
++ GL A++ GDMR+A+N LQST+ + E V+ P P I +
Sbjct: 200 SDEGLGAIIFTSEGDMRQAINNLQSTYTGLGFVNPENVFKVCDQPHPFLIRSLLMACKKG 259
Query: 281 SFADSFKRISEMKMRKGLALVDIVREVTMFVFKI-KMPSDVRVRLMNDLADIEYRLSFGC 339
++ +++ E+ KG A VDIV + V + +P ++ + ++ ++ G
Sbjct: 260 VVDEAMEKLDEI-WSKGYAAVDIVTTLFRVVKTLDGVPEATKLEFIKEIGWTHMKILEGV 318
Query: 340 NDKLQLGSIISTFTQ 354
+QLG +I+ +
Sbjct: 319 ATVVQLGGLIARLCK 333
>gi|374724905|gb|EHR76985.1| replication factor C small subunit [uncultured marine group II
euryarchaeote]
Length = 328
Score = 212 bits (539), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 110/309 (35%), Positives = 181/309 (58%), Gaps = 4/309 (1%)
Query: 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 102
WVE++RPQ+++++ IV + + + PHLL GPPGTGKT+ +A+ + ++G +
Sbjct: 16 WVERHRPQAVSEIRGQHAIVQRLAVYSEKKEFPHLLFAGPPGTGKTTAAMALTKDVFGEE 75
Query: 103 YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALR 162
Y +LE+NASD+R ++ +R +++ FA T + A K++ LDEADA+T DAQ ALR
Sbjct: 76 YRRNLLEMNASDERKLESIRTKVKQFARTSPYG---GAQFKIIFLDEADALTNDAQGALR 132
Query: 163 RVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTE 222
R++E+Y + RF L CN +KII +QSRC FRF PL V ++ HV E EG+ + +
Sbjct: 133 RIMEQYAETCRFILSCNYSSKIIEPIQSRCAVFRFRPLSDADVNAQIHHVAEIEGVKLED 192
Query: 223 GGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESF 282
AL R+ GD+RKAL LQ + IT + +Y + P+ + Q ++ F
Sbjct: 193 DAGDALTRISQGDLRKALTGLQVASAINMHITRDLIYETSATAPPEALHQYLMACRDDGF 252
Query: 283 ADSFKRISEMKMRKGLALVDIVREVTMFVFKIK-MPSDVRVRLMNDLADIEYRLSFGCND 341
+ +R+ E+ R GLA D V ++ ++ + D ++ L +A++EYRL G +
Sbjct: 253 HAARRRLRELLDRYGLAGTDFVNQLHRELYTADFLNEDAKLDLTEWMAEVEYRLVEGGGE 312
Query: 342 KLQLGSIIS 350
++QL ++ +
Sbjct: 313 QIQLDALTA 321
>gi|358367795|dbj|GAA84413.1| DNA replication factor C subunit Rfc2 [Aspergillus kawachii IFO
4308]
Length = 389
Score = 212 bits (539), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 105/218 (48%), Positives = 145/218 (66%), Gaps = 11/218 (5%)
Query: 39 KASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKL 98
K PWVEKYRP++L DVAA + R + LPH+L YGPPGTGKTSTILA+A+ L
Sbjct: 33 KQQPWVEKYRPKTLDDVAAQDHTTKVLQRTLQASNLPHMLFYGPPGTGKTSTILALAKSL 92
Query: 99 YGAQ-YHNMILELNASDDRGIDVVRQQIQDFASTQ-SFSFGVKAS---------VKLVLL 147
+G Y + ILELNASD+RGI +VR +I++FA Q + S G+ K+++L
Sbjct: 93 FGPSLYRSRILELNASDERGIGIVRDKIKNFARAQLTHSTGLSEEYLAQYPCPPFKIIIL 152
Query: 148 DEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTE 207
DEAD+MT+DAQ ALRR +E+Y++ TRF L+CN V +II L SRC++FRF L+ E
Sbjct: 153 DEADSMTQDAQSALRRTMEQYSRITRFCLVCNYVTRIIEPLASRCSKFRFKALDNSAAGE 212
Query: 208 RLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQS 245
RL+H+ + E L + +G + L+ GDMR+A+ +QS
Sbjct: 213 RLEHIAKVENLRLEDGVVDKLIACSEGDMRRAITYMQS 250
>gi|402074193|gb|EJT69722.1| replication factor C subunit 4 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 360
Score = 212 bits (539), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 109/233 (46%), Positives = 149/233 (63%), Gaps = 4/233 (1%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP L DV + + ++ + + + +PH+++ G PG GKT+++L +AR+L G
Sbjct: 35 PWVEKYRPIFLDDVVGNTETIERLKIIAKDGNMPHVIISGMPGIGKTTSVLCLARQLLGD 94
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQ-SFSFGVKASVKLVLLDEADAMTKDAQFA 160
Y +LELNASD+RGIDVVR +I+ FA + + G KLV+LDEAD+MT AQ A
Sbjct: 95 SYKEAVLELNASDERGIDVVRNRIKGFAQKKVTLPAGRH---KLVILDEADSMTSGAQQA 151
Query: 161 LRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDV 220
LRR +E Y+ TRFA CNQ NKII LQSRC R+A L V RL +IEAEG+
Sbjct: 152 LRRTMEIYSNTTRFAFACNQSNKIIEPLQSRCAILRYARLTDAQVVRRLLQIIEAEGVRH 211
Query: 221 TEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQI 273
+E GLAALV GDMR+A+N LQSTH ++ + V+ +P P ++ +
Sbjct: 212 SEDGLAALVFSAEGDMRQAINNLQSTHAGFGFVSGDNVFRVVDSPHPIKVQAM 264
>gi|345311289|ref|XP_001516769.2| PREDICTED: replication factor C subunit 2-like [Ornithorhynchus
anatinus]
Length = 329
Score = 212 bits (539), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 118/324 (36%), Positives = 186/324 (57%), Gaps = 3/324 (0%)
Query: 39 KASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKL 98
+A WVEKYRP L ++ + D V ++ E +P++++ GPPGTGKT++IL +AR L
Sbjct: 9 RAVTWVEKYRPVKLNEIVGNEDTVSRLEVFAKEGNVPNIIIAGPPGTGKTTSILCLARAL 68
Query: 99 YGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQ 158
G + +LELNAS+DRGIDVVR +I+ FA Q + + K+++LDEAD+MT AQ
Sbjct: 69 LGPALKDAVLELNASNDRGIDVVRNKIKMFAQ-QKVTLP-RGRHKIIVLDEADSMTDGAQ 126
Query: 159 FALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGL 218
ALRR +E Y+K TRFAL CN +KII +QSRC R+ L V RL VIE E +
Sbjct: 127 QALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQVLARLLKVIEKEDV 186
Query: 219 DVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLL 278
++ GL A+V GDMR+ALN LQST+ I E V+ P P ++++ +
Sbjct: 187 PHSDDGLEAIVFTAQGDMRQALNNLQSTYSGFGFINSENVFKVCDEPHPLLVKEMIQHCV 246
Query: 279 NESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFG 338
+ + +++K ++ + R G + DI+ + +M +++ + ++ +++ G
Sbjct: 247 HANIDEAYKILAHL-WRLGYSPEDIIGNIFRVCKTFQMAEYLKLEFIKEIGYTHMKVAEG 305
Query: 339 CNDKLQLGSIISTFTQARSAIVAA 362
N LQ+ +++ Q A A+
Sbjct: 306 VNSLLQMAGLLARLCQKTLAPAAS 329
>gi|225562412|gb|EEH10691.1| conserved hypothetical protein [Ajellomyces capsulatus G186AR]
Length = 394
Score = 212 bits (539), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 105/215 (48%), Positives = 143/215 (66%), Gaps = 11/215 (5%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP++L DVA+ V + R + LPH+L YGPPGTGKTSTILA+A+ LYG
Sbjct: 36 PWVEKYRPKTLDDVASQEHTVTVLQRTLQASNLPHMLFYGPPGTGKTSTILALAKSLYGP 95
Query: 102 Q-YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASV----------KLVLLDEA 150
Q Y + ILELNASD+RGI +VR++I+DFA Q + S K+++LDEA
Sbjct: 96 QLYRSRILELNASDERGISIVREKIKDFARMQLSHPPLSDSAYREKYPCPPFKIIILDEA 155
Query: 151 DAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLK 210
D+MT+DAQ ALRR +E+Y++ TRF L+CN V +II L SRC++FRF L+ RL+
Sbjct: 156 DSMTQDAQSALRRTMERYSRITRFCLVCNYVTRIIDPLASRCSKFRFKALDGSAAGCRLE 215
Query: 211 HVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQS 245
+ E L + +G + L+R GD+R+A+ LQS
Sbjct: 216 EIARMEKLRLADGCIRTLIRCSEGDLRRAITYLQS 250
>gi|242024266|ref|XP_002432549.1| Replication factor C subunit, putative [Pediculus humanus corporis]
gi|212518009|gb|EEB19811.1| Replication factor C subunit, putative [Pediculus humanus corporis]
Length = 360
Score = 212 bits (539), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 121/325 (37%), Positives = 187/325 (57%), Gaps = 15/325 (4%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP+++ D+ ++V + + LP+LL YGPPGTGKTSTILA AR+L+G
Sbjct: 36 PWVEKYRPKTVDDIVEQVEVVSVLRQTLKGADLPNLLFYGPPGTGKTSTILAAARQLFGD 95
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKAS----VKLVLLDEADAMTKDA 157
+ ILELNASDDRGI V+R +++ FA + S K+VLLDEAD+MT A
Sbjct: 96 MFKERILELNASDDRGIQVIRDKVKTFAQLSASSTRPDGQPCPPFKIVLLDEADSMTSAA 155
Query: 158 QFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEG 217
Q ALRR +E YTK TRF L+CN V++IIP + SRC++FRF PL + ERL + +AE
Sbjct: 156 QAALRRTMELYTKTTRFCLVCNYVSRIIPPITSRCSKFRFKPLGENKIFERLSKISKAEK 215
Query: 218 LDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQ---ITEEAVYLCTGNPLPKDIEQIS 274
+++ + L LV+ GD+R+A+ LQS ++ IT E V G +P + +
Sbjct: 216 VNINDDTLMTLVKCTGGDLRRAITSLQSCARIKEEGELITIEDVNEVAG-VIP---DSVI 271
Query: 275 YWLLNESFADSFKRISEM---KMRKGLALVDIVREVTMFVFK-IKMPSDVRVRLMNDLAD 330
L+N +++ I + + ++ ++ ++T ++ + K+ + + + L+
Sbjct: 272 TELINTCNKNNYTTIEDFVNEVTYQAYSVAQLMEQLTEYIIQDFKLSDKAKATIFDKLSL 331
Query: 331 IEYRLSFGCNDKLQLGSIISTFTQA 355
RL G ++ L L + T +A
Sbjct: 332 CSSRLIDGASEYLLLIDLCCTIAKA 356
>gi|240281117|gb|EER44620.1| DNA replication factor C subunit Rfc2 [Ajellomyces capsulatus H143]
gi|325092385|gb|EGC45695.1| activator 1 41 kDa subunit [Ajellomyces capsulatus H88]
Length = 394
Score = 212 bits (539), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 105/215 (48%), Positives = 143/215 (66%), Gaps = 11/215 (5%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP++L DVA+ V + R + LPH+L YGPPGTGKTSTILA+A+ LYG
Sbjct: 36 PWVEKYRPKTLDDVASQEHTVTVLQRTLQASNLPHMLFYGPPGTGKTSTILALAKSLYGP 95
Query: 102 Q-YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASV----------KLVLLDEA 150
Q Y + ILELNASD+RGI +VR++I+DFA Q + S K+++LDEA
Sbjct: 96 QLYRSRILELNASDERGISIVREKIKDFARMQLSHPPLSDSAYREKYPCPPFKIIILDEA 155
Query: 151 DAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLK 210
D+MT+DAQ ALRR +E+Y++ TRF L+CN V +II L SRC++FRF L+ RL+
Sbjct: 156 DSMTQDAQSALRRTMERYSRITRFCLVCNYVTRIIDPLASRCSKFRFKALDGSAAGCRLE 215
Query: 211 HVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQS 245
+ E L + +G + L+R GD+R+A+ LQS
Sbjct: 216 EIARMEKLRLADGCIRTLIRCSEGDLRRAITYLQS 250
>gi|294893510|ref|XP_002774508.1| replication factor C subunit, putative [Perkinsus marinus ATCC
50983]
gi|239879901|gb|EER06324.1| replication factor C subunit, putative [Perkinsus marinus ATCC
50983]
Length = 514
Score = 212 bits (539), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 116/308 (37%), Positives = 179/308 (58%), Gaps = 5/308 (1%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP SL+DV + + + + + +P+LLL GPPG GKT++++ +AR L G
Sbjct: 16 PWVEKYRPISLSDVVGNEPAMQRLRAMAEDRHMPNLLLSGPPGCGKTTSVMCLARALLGE 75
Query: 102 QY-HNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFA 160
+LELNASDDRGIDVVR +I+ FA + K+V+LDEAD+MT+ AQ A
Sbjct: 76 DLVKTAVLELNASDDRGIDVVRNRIKTFAQQKISLPAGGCQQKIVILDEADSMTEAAQQA 135
Query: 161 LRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDV 220
+RR +E ++ TRFAL CNQ KII +QSRC RF+ L+ + ++K V + EG+ +
Sbjct: 136 MRRTMEIHSATTRFALACNQSTKIIEPIQSRCAIVRFSRLKDSDIEAQVKKVADMEGVQL 195
Query: 221 TEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNE 280
GL AL+ GDMR ALN LQST +T E V+ P P +++Q + +N
Sbjct: 196 RGDGLEALIFTAEGDMRAALNNLQSTATGFGVVTRENVFKVCDQPQPGELKQATLDCVNN 255
Query: 281 SFADSFKRISEMKMRKGLALVDIVREVTMFVFKI---KMPSDVRVRLMNDLADIEYRLSF 337
+ +F R+ ++ +G ++ DIV + + + ++ +++ + +A R+S
Sbjct: 256 DWCSAFDRLDKITA-QGYSIGDIVGTLERVIRNLPPEELNEAIKIEFLQAIAMCRLRMSE 314
Query: 338 GCNDKLQL 345
G ++QL
Sbjct: 315 GLQSRVQL 322
>gi|340371349|ref|XP_003384208.1| PREDICTED: replication factor C subunit 2-like [Amphimedon
queenslandica]
Length = 346
Score = 212 bits (539), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 123/316 (38%), Positives = 178/316 (56%), Gaps = 3/316 (0%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRPQ L+++ + D V ++ + E +P++++ GPPGTGKT++IL +AR L GA
Sbjct: 33 PWVEKYRPQKLSEIVGNEDTVKRLEVFSKEGNVPNIIIAGPPGTGKTTSILCLARTLLGA 92
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFAL 161
+ +LELNAS+DRGIDVVR +I+ FA Q + K+V+LDEAD+M+ AQ AL
Sbjct: 93 SMKDAVLELNASNDRGIDVVRNRIKMFAH-QKVTLP-PGRHKIVILDEADSMSDGAQQAL 150
Query: 162 RRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVT 221
RR +E Y+K TRFAL CN KII +QSRC R++ L + ERL V + E L T
Sbjct: 151 RRTMEIYSKTTRFALACNDSEKIIEPIQSRCAMLRYSRLSDAQILERLLEVCDKENLIRT 210
Query: 222 EGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNES 281
+ GL A++ GDMR+ALN LQST+ I E V+ P P I+++ N S
Sbjct: 211 DDGLEAIIFTAQGDMRQALNNLQSTNDGFSFINSENVFKVCDEPHPLLIKEM-LTHCNNS 269
Query: 282 FADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCND 341
DS I KG + DI+ + M +++ + ++ R+ G +
Sbjct: 270 DIDSAFLILMTLWDKGYSAHDIITSIFRVCKTHSMSEYLKLEYLKEVGYTHMRIIKGVDS 329
Query: 342 KLQLGSIISTFTQARS 357
LQL +++ S
Sbjct: 330 LLQLSGLLARLCMKTS 345
>gi|323508283|emb|CBQ68154.1| probable RFC4-DNA replication factor C, 37 kDa subunit [Sporisorium
reilianum SRZ2]
Length = 341
Score = 212 bits (539), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 117/315 (37%), Positives = 179/315 (56%), Gaps = 6/315 (1%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP L DV ++D +D + + ++ PHLL+ G PG GKT+++L +AR L G
Sbjct: 21 PWVEKYRPMRLNDVVGNKDTIDRLKVIQNDGNCPHLLISGLPGIGKTTSVLCLARALLGD 80
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQ-SFSFGVKASVKLVLLDEADAMTKDAQFA 160
Y +LELNASD+RG+DVVR +I+ FA + S G K+++LDEAD+MT AQ A
Sbjct: 81 AYKEGVLELNASDERGVDVVRNKIKTFAQKKVSLPPGRH---KIIILDEADSMTPAAQQA 137
Query: 161 LRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDV 220
LRR +E Y+ TRF CNQ NKII +QSRC R+ + + +RL + E E ++
Sbjct: 138 LRRTMEIYSNTTRFCFACNQSNKIIEPIQSRCAILRYGKVRDEQILKRLLEICEMEAVEY 197
Query: 221 TEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNE 280
++ GLAA++ GDMR+A+N LQST ++ + V+ P P I +
Sbjct: 198 SDEGLAAIIFTTEGDMRQAINNLQSTWTGLGFVSPDNVFKVCDQPHPFLIRALLLSCKKG 257
Query: 281 SFADSFKRISEMKMRKGLALVDIVREVTMFVFKI-KMPSDVRVRLMNDLADIEYRLSFGC 339
D+ +++ E+ KG A VDIV + V + +P +++ + ++ R+ G
Sbjct: 258 DIDDAMEKLDEI-WSKGYAAVDIVTTLFRVVKTLDGIPEATKLKFIKEIGWTHMRILEGV 316
Query: 340 NDKLQLGSIISTFTQ 354
+QLG +I+ +
Sbjct: 317 ATVVQLGGLIARLCK 331
>gi|321456941|gb|EFX68037.1| hypothetical protein DAPPUDRAFT_301682 [Daphnia pulex]
Length = 356
Score = 211 bits (538), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 124/311 (39%), Positives = 190/311 (61%), Gaps = 8/311 (2%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP+++ +V+ ++V + + LP+LL YGPPGTGKTSTILA AR L+G
Sbjct: 35 PWVEKYRPRTIDEVSYQEEVVAVLQKSLQGADLPNLLFYGPPGTGKTSTILAAARDLFGD 94
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQSFSF---GVKAS-VKLVLLDEADAMTKDA 157
Y + +LELNASD+RGI VVR++++ F+ S G + K+V+LDEAD+MT A
Sbjct: 95 IYKDRVLELNASDERGIQVVREKVKIFSQRTVSSVRPDGKQCPPFKIVILDEADSMTGAA 154
Query: 158 QFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEG 217
Q ALRR +EK TK+TRF LICN V++II L SRC++FRF PL + +RL+H+ AE
Sbjct: 155 QAALRRTMEKETKSTRFCLICNYVSRIIEPLTSRCSKFRFKPLPREILVKRLEHICIAEN 214
Query: 218 LDVTEGGLAALVRLCNGDMRKALNILQS-THMASQQI-TEEAVYLCTGNPLPKDIEQISY 275
+ +E L +L+ GD+R+A+ LQS ++ S+ T E +Y TG IE +
Sbjct: 215 MSCSEEVLESLIEASEGDLRRAITFLQSIANLNSEACPTIEDIYEITGRVPSCWIEGLLE 274
Query: 276 WLLNESFADSFKRISEMKMRKGLALVDIVREV-TMFVFKIKMPSDVRVRLMNDLADIEYR 334
+ S+ D+ + +G ++ ++ ++ VF ++ S + + LA ++R
Sbjct: 275 KCTSGSY-DAMQSFINNFSAEGFSVSQLLNQLHERIVFSTELSSKQKNVICEKLAICDHR 333
Query: 335 LSFGCNDKLQL 345
L+ G +++LQL
Sbjct: 334 LAEGADEQLQL 344
>gi|12847419|dbj|BAB27561.1| unnamed protein product [Mus musculus]
Length = 349
Score = 211 bits (538), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 116/321 (36%), Positives = 182/321 (56%), Gaps = 3/321 (0%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP L ++ + D V ++ E +P++++ GPPGTGKT++IL +AR L G
Sbjct: 32 PWVEKYRPLKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGP 91
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFAL 161
+ + LNAS+DRGIDVVR +I+ FA Q + K K+++LDEAD+MT AQ AL
Sbjct: 92 ALKDAVWRLNASNDRGIDVVRNKIKMFAQ-QKVTLP-KGRHKIIILDEADSMTDGAQQAL 149
Query: 162 RRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVT 221
RR +E Y+K TRFAL CN +KII +QSRC R+ L V RL +VIE E + T
Sbjct: 150 RRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQVLTRLMNVIEKEKVPYT 209
Query: 222 EGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNES 281
+ GL A++ GDMR+ALN LQST I E V+ P P ++++ ++ +
Sbjct: 210 DDGLEAIIFTAQGDMRQALNNLQSTFSGFGYINSENVFKVCDEPHPLLVKEMIQHCVDAN 269
Query: 282 FADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCND 341
+++K ++ + G + D++ + M +++ + ++ +++ G N
Sbjct: 270 IDEAYKILAHL-WHLGYSPEDVIGNIFRVCKTFPMAEYLKLEFIKEIGYTHMKVAEGVNS 328
Query: 342 KLQLGSIISTFTQARSAIVAA 362
LQ+ +++ Q A VA+
Sbjct: 329 LLQMAGLLARLCQKTMAPVAS 349
>gi|261205028|ref|XP_002627251.1| DNA replication factor C subunit Rfc2 [Ajellomyces dermatitidis
SLH14081]
gi|239592310|gb|EEQ74891.1| DNA replication factor C subunit Rfc2 [Ajellomyces dermatitidis
SLH14081]
gi|327348452|gb|EGE77309.1| DNA replication factor C subunit Rfc2 [Ajellomyces dermatitidis
ATCC 18188]
Length = 389
Score = 211 bits (538), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 104/215 (48%), Positives = 142/215 (66%), Gaps = 11/215 (5%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP++L DVA+ V + R + LPH+L YGPPGTGKTSTILA+A+ L+G
Sbjct: 34 PWVEKYRPKTLDDVASQEHTVTVLQRTLQASNLPHMLFYGPPGTGKTSTILALAKSLFGP 93
Query: 102 Q-YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASV----------KLVLLDEA 150
Q Y + ILELNASD+RGI +VR++I+DFA Q S K+++LDEA
Sbjct: 94 QLYRSRILELNASDERGISIVREKIKDFARMQLSHPPASDSAYRETYPCPPFKIIILDEA 153
Query: 151 DAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLK 210
D+MT+DAQ ALRR +E+Y++ TRF L+CN V +II L SRC++FRF L+ RL+
Sbjct: 154 DSMTQDAQSALRRTMERYSRITRFCLVCNYVTRIIDPLASRCSKFRFKALDGSAAGSRLE 213
Query: 211 HVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQS 245
+ E L + +G + L+R GD+R+A+ LQS
Sbjct: 214 KIARVEKLKLADGCVETLIRCSEGDLRRAITYLQS 248
>gi|336472626|gb|EGO60786.1| hypothetical protein NEUTE1DRAFT_144139 [Neurospora tetrasperma
FGSC 2508]
gi|350294141|gb|EGZ75226.1| putative replication factor C [Neurospora tetrasperma FGSC 2509]
Length = 357
Score = 211 bits (538), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 108/231 (46%), Positives = 149/231 (64%), Gaps = 4/231 (1%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP L DV + + ++ + + E +PH ++ G PG GKT+++L +AR+L G
Sbjct: 34 PWVEKYRPVFLDDVVGNTETIERLKIIAKEGNMPHFIISGMPGIGKTTSVLCLARQLLGD 93
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQ-SFSFGVKASVKLVLLDEADAMTKDAQFA 160
Y +LELNASD+RGI+VVRQ+I+ FA + + G K+V+LDEAD+MT AQ A
Sbjct: 94 AYKEAVLELNASDERGIEVVRQRIKGFAQKKVTLPPGRH---KIVILDEADSMTSGAQQA 150
Query: 161 LRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDV 220
LRR +E Y+ TRFA CNQ NKII LQSRC RFA L V +RL +IEAE ++
Sbjct: 151 LRRTMEIYSNTTRFAFACNQSNKIIEPLQSRCAILRFAKLTDAQVVKRLLQIIEAEKVEY 210
Query: 221 TEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIE 271
++ GLAALV GDMR+A+N LQSTH ++ + V+ +P P ++
Sbjct: 211 SDDGLAALVFSAEGDMRQAINNLQSTHAGFGFVSGDNVFKVVDSPHPIKVQ 261
>gi|28950096|emb|CAD70859.1| probable REPLICATION FACTOR C (40 KDA SUBUNIT) [Neurospora crassa]
Length = 357
Score = 211 bits (538), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 108/231 (46%), Positives = 149/231 (64%), Gaps = 4/231 (1%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP L DV + + ++ + + E +PH ++ G PG GKT+++L +AR+L G
Sbjct: 34 PWVEKYRPVFLDDVVGNTETIERLKIIAKEGNMPHFIISGMPGIGKTTSVLCLARQLLGD 93
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQ-SFSFGVKASVKLVLLDEADAMTKDAQFA 160
Y +LELNASD+RGI+VVRQ+I+ FA + + G K+V+LDEAD+MT AQ A
Sbjct: 94 AYKEAVLELNASDERGIEVVRQRIKGFAQKKVTLPPGRH---KIVILDEADSMTSGAQQA 150
Query: 161 LRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDV 220
LRR +E Y+ TRFA CNQ NKII LQSRC RFA L V +RL +IEAE ++
Sbjct: 151 LRRTMEIYSNTTRFAFACNQSNKIIEPLQSRCAILRFAKLTDAQVVKRLLQIIEAEKVEY 210
Query: 221 TEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIE 271
++ GLAALV GDMR+A+N LQSTH ++ + V+ +P P ++
Sbjct: 211 SDDGLAALVFSAEGDMRQAINNLQSTHAGFGFVSGDNVFKVVDSPHPIKVQ 261
>gi|313217116|emb|CBY38291.1| unnamed protein product [Oikopleura dioica]
gi|313225063|emb|CBY20856.1| unnamed protein product [Oikopleura dioica]
Length = 326
Score = 211 bits (538), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 117/309 (37%), Positives = 176/309 (56%), Gaps = 3/309 (0%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP ++D+A +++ V+ + E LP++++ GPPG GKT++IL +AR + G
Sbjct: 10 PWVEKYRPTFMSDIAGNQETVERLAVFAKEGNLPNIIIAGPPGCGKTTSILCLARTMLGE 69
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFAL 161
++ +LELNAS+DRGIDVVR +I+ FA + K K+++LDEAD+MT AQ AL
Sbjct: 70 HFNEAVLELNASNDRGIDVVRNKIKMFAQKKCTLPAGKH--KIIILDEADSMTSGAQQAL 127
Query: 162 RRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVT 221
RR +E Y+K TRFAL CN KII +QSRC RF+ L V V R+ VI+ E +D
Sbjct: 128 RRTMEIYSKTTRFALACNNSEKIIEPIQSRCAVLRFSKLSDVQVLARITEVIKHENVDYD 187
Query: 222 EGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNES 281
+ GL A++ GDMR+ALN LQ+TH + + V+ P P I ++ + L
Sbjct: 188 QKGLEAILFTAQGDMRQALNNLQATHSGLGVVNSDNVFKVCDEPHPLMISKMLDFCLERK 247
Query: 282 FADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCND 341
++ I ++ G A DI+ V K P +++ + + R+ G
Sbjct: 248 TNEATGIIRQL-YNYGYACEDIITTVFRVSKTHKSPELIKLEWIKQIGLAHMRIIEGTTT 306
Query: 342 KLQLGSIIS 350
+QL ++S
Sbjct: 307 LVQLIGLVS 315
>gi|428174860|gb|EKX43753.1| hypothetical protein GUITHDRAFT_140204 [Guillardia theta CCMP2712]
Length = 331
Score = 211 bits (538), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 115/304 (37%), Positives = 175/304 (57%), Gaps = 3/304 (0%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRPQ+L +V + D V + + + +PHLLL G PG GKT+ +LA+AR+L G
Sbjct: 13 PWVEKYRPQTLKEVVGNEDAVARLQAIAKDGNMPHLLLTGSPGIGKTTCVLALARELLGD 72
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFAL 161
+ +LELNASD+RGIDVVR +I+ FA Q + K+++LDEAD+MT +Q A+
Sbjct: 73 SFKEGVLELNASDERGIDVVRNKIKMFAQ-QKVTLP-PGRHKIIILDEADSMTSASQQAM 130
Query: 162 RRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVT 221
RR +E Y+ TRFAL CN ++II +QSRC RFA L + RL+ + E E + +
Sbjct: 131 RRTMELYSNTTRFALACNNSSEIIEPIQSRCAILRFAKLSDKELLSRLQDICEKEEVLAS 190
Query: 222 EGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNES 281
GL AL+ +GDMR+A+N LQST + +E+V+ P PK QI L
Sbjct: 191 TDGLEALIFTADGDMRQAVNSLQSTANGFGIVNQESVFKVCDQPHPKTAIQIVKSCLTGD 250
Query: 282 FADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCND 341
++ ++ ++ R G + DIV+ + + MP ++ + ++ R+ G +
Sbjct: 251 IKNAHSKLEDLWQR-GYSAQDIVQTIFKVTRNMDMPEKSKLDFLKEIGIYHMRVLEGVDS 309
Query: 342 KLQL 345
+Q+
Sbjct: 310 LVQV 313
>gi|294867359|ref|XP_002765080.1| replication factor C subunit, putative [Perkinsus marinus ATCC
50983]
gi|239864960|gb|EEQ97797.1| replication factor C subunit, putative [Perkinsus marinus ATCC
50983]
Length = 344
Score = 211 bits (538), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 116/318 (36%), Positives = 181/318 (56%), Gaps = 5/318 (1%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP SL+DV + + + + + +P+LLL GPPG GKT++++ +AR L G
Sbjct: 16 PWVEKYRPISLSDVVGNEPAMQRLRAMAEDRHMPNLLLSGPPGCGKTTSVMCLARALLGE 75
Query: 102 QY-HNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFA 160
+LELNASDDRGIDVVR +I+ FA + K+V+LDEAD+MT+ AQ A
Sbjct: 76 DLVKTAVLELNASDDRGIDVVRNRIKTFAQQKISLPAGGCQQKIVILDEADSMTEAAQQA 135
Query: 161 LRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDV 220
+RR +E ++ TRFAL CNQ KII +QSRC RF+ L+ + ++K V + E + +
Sbjct: 136 MRRTMEIHSATTRFALACNQSTKIIEPIQSRCAIVRFSRLKDSDIEAQVKKVADMEEVQL 195
Query: 221 TEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNE 280
GL AL+ GDMR ALN LQST +T E V+ P P +++Q + +N
Sbjct: 196 RGDGLEALIFTAEGDMRAALNNLQSTATGFGIVTRENVFKVCDQPQPGELKQATLDCVNN 255
Query: 281 SFADSFKRISEMKMRKGLALVDIVREVTMFVFKI---KMPSDVRVRLMNDLADIEYRLSF 337
+ +F R+ + +G ++ DIV + + + ++ +++ + +A R+S
Sbjct: 256 DWCSAFDRLDRITA-QGYSIGDIVGTLERVIRNLPPEELNEAIKIEFLQAIAMCRLRMSE 314
Query: 338 GCNDKLQLGSIISTFTQA 355
G ++QL +++ A
Sbjct: 315 GLQSRVQLSGLVAAMCAA 332
>gi|239611536|gb|EEQ88523.1| DNA replication factor C subunit Rfc2 [Ajellomyces dermatitidis
ER-3]
Length = 389
Score = 211 bits (538), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 104/215 (48%), Positives = 142/215 (66%), Gaps = 11/215 (5%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP++L DVA+ V + R + LPH+L YGPPGTGKTSTILA+A+ L+G
Sbjct: 34 PWVEKYRPKTLDDVASQEHTVTVLQRTLQASNLPHMLFYGPPGTGKTSTILALAKSLFGP 93
Query: 102 Q-YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASV----------KLVLLDEA 150
Q Y + ILELNASD+RGI +VR++I+DFA Q S K+++LDEA
Sbjct: 94 QLYRSRILELNASDERGISIVREKIKDFARMQLSHPPASDSAYRETYPCPPFKIIILDEA 153
Query: 151 DAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLK 210
D+MT+DAQ ALRR +E+Y++ TRF L+CN V +II L SRC++FRF L+ RL+
Sbjct: 154 DSMTQDAQSALRRTMERYSRITRFCLVCNYVTRIIDPLASRCSKFRFKALDGSAAGSRLE 213
Query: 211 HVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQS 245
+ E L + +G + L+R GD+R+A+ LQS
Sbjct: 214 KIARVEKLKLADGCVETLIRCSEGDLRRAITYLQS 248
>gi|242218752|ref|XP_002475163.1| predicted protein [Postia placenta Mad-698-R]
gi|220725657|gb|EED79635.1| predicted protein [Postia placenta Mad-698-R]
Length = 332
Score = 211 bits (538), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 117/314 (37%), Positives = 178/314 (56%), Gaps = 7/314 (2%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRPQ L D+ + + +D + + + PH+++ G PG GKT++I +A +L G
Sbjct: 24 PWVEKYRPQVLDDIVGNAETIDRLKVIAKDGNCPHIIISGMPGIGKTTSIHCLAHQLLGD 83
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQ-SFSFGVKASVKLVLLDEADAMTKDAQFA 160
Y +LELNASD+RGIDVVR +I+ FA + + G K+V+LDEAD+MT AQ A
Sbjct: 84 AYKEGVLELNASDERGIDVVRNKIKAFAQKKVTLPPGRH---KIVILDEADSMTPGAQQA 140
Query: 161 LRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDV 220
LRR +E Y TRFAL CN NKII +QSRC R+A L + +RL + E E +
Sbjct: 141 LRRTMEIYANTTRFALACNMSNKIIEPIQSRCAILRYAKLRDTEILKRLLEICEMEKVQY 200
Query: 221 TEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNE 280
+ GL AL+ GDMR+A+N LQSTH I+ + V+ P P ++ I +
Sbjct: 201 NDDGLTALIFTSEGDMRQAINNLQSTHSGFGFISGDNVFKVCDQPHPIIVQSIIRACIKS 260
Query: 281 SFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCN 340
+ ++++E+ +G + VDIV VT+F +P ++ + ++ R+ G
Sbjct: 261 DIDGAMEKLNEL-WDQGYSAVDIV--VTVFRVVKTIPEYTKLEYIKEIGWTHMRILEGVG 317
Query: 341 DKLQLGSIISTFTQ 354
+QLG +++ +
Sbjct: 318 TLIQLGGLMARLCK 331
>gi|401840377|gb|EJT43220.1| RFC4-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 323
Score = 211 bits (538), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 117/312 (37%), Positives = 184/312 (58%), Gaps = 10/312 (3%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP+ L+D+ +++ +D + ++ + +PH+++ G P GKT+++ +A +L G
Sbjct: 10 PWVEKYRPKVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPSIGKTTSVHCLAHELLGN 69
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFAL 161
Y + +LELNASDDRGIDVVR QI+ FA Q + K+++LDEAD+MT AQ AL
Sbjct: 70 SYADGVLELNASDDRGIDVVRNQIKHFA--QKKLHLPQGRHKIIILDEADSMTAGAQQAL 127
Query: 162 RRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVT 221
RR +E Y+ +TRFA CNQ NKII LQSRC R++ L V +RL +I+ E + T
Sbjct: 128 RRTMELYSNSTRFAFACNQSNKIIEPLQSRCAILRYSKLSDEDVLKRLLEIIKLEDVKYT 187
Query: 222 EGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNES 281
GL A++ GDMR+A+N LQST + + V+ +P P ++++ LL +
Sbjct: 188 NDGLEAIIFTAEGDMRQAINNLQSTVAGHDLVNADNVFRIVDSPHPLIVKKM---LLATN 244
Query: 282 FADSFKRISEMKMRKGLALVDIVR---EVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFG 338
DS + + +KG + +DIV VT + ++K VR+ ++ ++ R+ G
Sbjct: 245 LDDSIQILRTDLWKKGYSSIDIVTTSFRVTKNLTQVK--ESVRLEMIKEIGLTHMRILEG 302
Query: 339 CNDKLQLGSIIS 350
LQL +++
Sbjct: 303 VGTYLQLAGMLA 314
>gi|226292668|gb|EEH48088.1| replication factor C subunit 2 [Paracoccidioides brasiliensis Pb18]
Length = 395
Score = 211 bits (537), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 106/238 (44%), Positives = 151/238 (63%), Gaps = 17/238 (7%)
Query: 19 NLKPKDNGKNVIVSGTPPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLL 78
N KPK + K + + PWVEKYRP++L DVA+ + + R + LPH+L
Sbjct: 19 NSKPKASEKEA------DNTRLQPWVEKYRPKTLDDVASQEHTITVLQRTLQASNLPHML 72
Query: 79 LYGPPGTGKTSTILAVARKLYGAQ-YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFG 137
YGPPGTGKTSTILA+++ L+G Q Y + ILELNASD+RGI +VR++I+DFA Q
Sbjct: 73 FYGPPGTGKTSTILALSKSLFGPQLYRSRILELNASDERGISIVREKIKDFARMQLSHPP 132
Query: 138 VKASV----------KLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPA 187
V + K+++LDEAD+MT+DAQ ALRR +E+Y++ TRF L+CN V +II
Sbjct: 133 VSDTAYCEKYPCPPFKIIILDEADSMTQDAQSALRRTMERYSRITRFCLVCNYVTRIIDP 192
Query: 188 LQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQS 245
L SRC++FRF L+ RL+ + E L + +G + L+R GD+R+A+ +QS
Sbjct: 193 LASRCSKFRFKALDGSAAGSRLEEIARVEKLRLADGCIETLIRCSEGDLRRAITFMQS 250
>gi|440908469|gb|ELR58483.1| Replication factor C subunit 2 [Bos grunniens mutus]
Length = 354
Score = 211 bits (537), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 118/323 (36%), Positives = 184/323 (56%), Gaps = 5/323 (1%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP L ++ + D V ++ E +P++++ GPPGTGKT++IL +AR L G
Sbjct: 35 PWVEKYRPVKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGP 94
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFAL 161
+ +LELNAS+DRGIDVVR +I+ FA Q + K K+++LDEAD+MT AQ AL
Sbjct: 95 ALKDAVLELNASNDRGIDVVRNKIKMFAQ-QKVTL-PKGRHKIIILDEADSMTDGAQQAL 152
Query: 162 RRVIEKYTKNTRFALICNQVNKII--PALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLD 219
RR +E Y+K TRFAL CN +KII +QSRC R+ L + RL VIE E +
Sbjct: 153 RRTMEIYSKTTRFALACNASDKIIGEEPIQSRCAVLRYTKLTDTQILARLLSVIEKEKVQ 212
Query: 220 VTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLN 279
T+ GL A++ GDMR+ALN LQST+ I E V+ P P ++++ ++
Sbjct: 213 YTDDGLEAIIFTAQGDMRQALNNLQSTYSGFGFINSENVFKVCDEPHPLLVKEMIQHCVS 272
Query: 280 ESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGC 339
+++K ++ + G + DI+ + +M +++ + ++ +++ G
Sbjct: 273 ADIDEAYKILAHL-WHLGYSPEDIIGNIFRVCKTFQMAEYLKLEFIKEIGYTHMKIAEGV 331
Query: 340 NDKLQLGSIISTFTQARSAIVAA 362
N LQ+ +++ Q A VA+
Sbjct: 332 NSLLQMAGLLARLCQKTMAPVAS 354
>gi|389851690|ref|YP_006353924.1| replication factor C small subunit [Pyrococcus sp. ST04]
gi|388248996|gb|AFK21849.1| replication factor C small subunit [Pyrococcus sp. ST04]
Length = 867
Score = 211 bits (537), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 104/266 (39%), Positives = 175/266 (65%), Gaps = 3/266 (1%)
Query: 88 TSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLL 147
T+ LA+AR+L+G + + LELNASD+RGI+V+R+++++FA T+ AS K++ L
Sbjct: 600 TTAALALARELFGENWRHNFLELNASDERGINVIREKVKEFARTKPIG---GASFKIIFL 656
Query: 148 DEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTE 207
DEADA+T+DAQ ALRR +E ++ N RF L CN +KII +QSRC FRF PL + +
Sbjct: 657 DEADALTQDAQQALRRTMEMFSINVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAK 716
Query: 208 RLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLP 267
RLK + E EGL++TE GL A++ + GDMR+A+NILQ+ ++IT+E V++ P
Sbjct: 717 RLKFIAENEGLELTEEGLQAILYIAEGDMRRAINILQAAAALDKKITDENVFMVASRARP 776
Query: 268 KDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMND 327
+D+ Q+ L +F + +++ E+ +++GL+ D++ ++ VF + + +V+L +
Sbjct: 777 EDVRQMMLLALEGNFLKAREKLREILLKQGLSGEDVLVQMHKEVFNLPISEPKKVQLADK 836
Query: 328 LADIEYRLSFGCNDKLQLGSIISTFT 353
+ + +RL G N+ +QL ++++ FT
Sbjct: 837 IGEYNFRLVEGANEMIQLEALLAQFT 862
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 27/49 (55%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTST 90
PWVEKYRPQ L D+ IV + +PHLL GPPG GK T
Sbjct: 14 PWVEKYRPQRLDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKCLT 62
>gi|254585047|ref|XP_002498091.1| ZYRO0G02002p [Zygosaccharomyces rouxii]
gi|238940985|emb|CAR29158.1| ZYRO0G02002p [Zygosaccharomyces rouxii]
Length = 352
Score = 211 bits (537), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 121/334 (36%), Positives = 193/334 (57%), Gaps = 29/334 (8%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP+ L DV+A + + + + LPH+L YGPPGTGKTSTI A+ R+LYG
Sbjct: 24 PWVEKYRPKKLDDVSAQDHTISVLKKTLTSANLPHMLFYGPPGTGKTSTIFALTRELYGP 83
Query: 102 QYHNM-ILELNASDDRGIDVVRQQIQDFA-------STQSFSFGVKASVKLVLLDEADAM 153
+ +LELNASD+RGI +VR+++++FA S ++ K+++LDEAD+M
Sbjct: 84 ELSKTRVLELNASDERGIAIVREKVKNFARLTVSKPSKEALEKYPCPPYKIIILDEADSM 143
Query: 154 TKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVI 213
T DAQ ALRR +E ++ TRF LICN V +II L SRC++FRF L+ + RLK +
Sbjct: 144 TADAQSALRRTMENHSNVTRFCLICNYVTRIIDPLASRCSKFRFKSLDESNAIGRLKEIS 203
Query: 214 EAEGLDVTEGGLAALVRLCNGDMRKALNILQST----------HMASQQITEEAVYLCTG 263
+ E + EG L ++ + NGDMR+A+ +LQS + SQ++ EE L
Sbjct: 204 QLENVPHEEGALQRILEISNGDMRRAITLLQSAAKRLGFGELDKITSQEV-EELAGLVPT 262
Query: 264 NPLPKDIEQISYWLLNE--SFADSFKRISEMKMRKGLALVDIVREVT-MFVFKIKMPSDV 320
+ L + + ++S +NE + + F ++ G + V +V ++ ++ +D
Sbjct: 263 HILQEMLNKVSQGNVNEIIEYVNEF-------VKNGWSAVSVVNQLHDYYITSNDYGTDF 315
Query: 321 RVRLMNDLADIEYRLSFGCNDKLQLGSIISTFTQ 354
+ ++ L D + +L+ G N+ LQL +++ +Q
Sbjct: 316 KNKISLLLFDADAKLANGTNEHLQLLNLLVQISQ 349
>gi|440797689|gb|ELR18770.1| DNA replication factor C complex subunit 2, putative [Acanthamoeba
castellanii str. Neff]
Length = 346
Score = 211 bits (537), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 123/324 (37%), Positives = 186/324 (57%), Gaps = 6/324 (1%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP+ + D+ + + V + + SE +P+L+L GPPGTGKT++IL +A L G
Sbjct: 23 PWVEKYRPKDIKDIVGNVETVSRLQIIASEGNMPNLILAGPPGTGKTTSILCLAHALLGP 82
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQ-SFSFGVKASVKLVLLDEADAMTKDAQFA 160
Y +LELNASDDRGIDVVR +I+ FA + + + G + K+V+LDEAD+MT AQ A
Sbjct: 83 NYREGVLELNASDDRGIDVVRNKIKMFAQKKVNLAPGRQ---KVVILDEADSMTSAAQQA 139
Query: 161 LRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEG-LD 219
LRR +E Y+ TRFAL CN +KII +QSRC R+ L V +RL VI+AEG +
Sbjct: 140 LRRTMEIYSNTTRFALACNVSSKIIEPIQSRCAILRYTRLGDEQVLKRLMEVIKAEGNIP 199
Query: 220 VTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLN 279
T+ GL A++ GDMR+ALN LQSTH + E V+ P P I+ I
Sbjct: 200 HTDDGLEAVLFTAEGDMRQALNNLQSTHAGYGFVNRENVFKVCDQPHPLLIKSIMNECEA 259
Query: 280 ESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGC 339
+ +++S + G + VDI+ + + + + +++ + ++ R G
Sbjct: 260 GELDTALQQLSSL-WGLGYSAVDIIGTMFRVLKTMSIQEYLKLEFIREIGFAHMRAVKGM 318
Query: 340 NDKLQLGSIISTFTQARSAIVAAA 363
N LQL ++I+ ++ + ++
Sbjct: 319 NSLLQLKALIARLCAVKTKLESSG 342
>gi|380470252|emb|CCF47823.1| replication factor C subunit 4 [Colletotrichum higginsianum]
Length = 361
Score = 211 bits (536), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 123/315 (39%), Positives = 181/315 (57%), Gaps = 14/315 (4%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP L DV + + +D + + E +PH+++ G PG GKT+++L +AR+L G
Sbjct: 38 PWVEKYRPVFLDDVVGNTETIDRLKIIAKEGNMPHVIISGMPGIGKTTSVLCLARQLLGD 97
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFAL 161
Y +LELNASD+RGIDVVR +I+ FA Q + KLV+LDEAD+MT AQ AL
Sbjct: 98 SYKEAVLELNASDERGIDVVRNRIKGFA--QKKVTLPQGRHKLVILDEADSMTSGAQQAL 155
Query: 162 RRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVT 221
RR +E Y+ TRFA CNQ NKII LQSRC R+A L V +RL +IEAE ++ +
Sbjct: 156 RRTMEIYSNTTRFAFACNQSNKIIEPLQSRCAILRYARLTDEQVVKRLMQIIEAEKVEYS 215
Query: 222 EGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQI---SYWLL 278
+ GLAALV GDMR+A+N LQST ++ + V+ +P P ++ + Y
Sbjct: 216 DDGLAALVFSAEGDMRQAINNLQSTFAGFGFVSGDNVFKVVDSPHPIKVQAMLKACYEGN 275
Query: 279 NESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPS---DVRVRLMNDLADIEYRL 335
+S DS + + ++ G + DI+ TMF +P+ ++ + ++ ++
Sbjct: 276 VDSALDSLRELWDL----GYSSHDIIS--TMFKVTKTIPTLSEHSKLEFIKEIGFTHMKI 329
Query: 336 SFGCNDKLQLGSIIS 350
G LQL ++
Sbjct: 330 LEGVQTLLQLSGCVA 344
>gi|401884137|gb|EJT48309.1| DNA replication factor (activator 1 subunit) [Trichosporon asahii
var. asahii CBS 2479]
Length = 389
Score = 211 bits (536), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 108/231 (46%), Positives = 152/231 (65%), Gaps = 13/231 (5%)
Query: 37 DIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVAR 96
D K PWVEKYRP+++ DV++ + V + + LPH+L YGPPGTGKTSTILA+AR
Sbjct: 14 DPKLQPWVEKYRPKTIDDVSSQDNTVAVLRKALMSTNLPHMLFYGPPGTGKTSTILALAR 73
Query: 97 KLYGAQ-YHNMILELNASDDRGIDVVRQQIQDFA-STQSFSFGVKA--------SVKLVL 146
+L+G + + +LELNASD+RGI VVR++I+ FA T + GV + KL++
Sbjct: 74 QLFGPDLFKSRVLELNASDERGISVVREKIKTFARETPRHNPGVASDGKEYPCPPYKLII 133
Query: 147 LDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVT 206
LDEAD+MT+DAQ ALRR++E Y++ TRF L+CN V +II + SRC++FRF PLE
Sbjct: 134 LDEADSMTQDAQSALRRIMETYSRITRFCLVCNYVTRIIEPVASRCSKFRFRPLEQSSSQ 193
Query: 207 ERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQST---HMASQQIT 254
R++ + E EG+ G L +++L GD+RKA+ LQ+ H AS T
Sbjct: 194 ARMEMIAENEGVQADPGVLELILQLAGGDLRKAITYLQTAQRLHQASDPPT 244
>gi|195389432|ref|XP_002053381.1| GJ23369 [Drosophila virilis]
gi|194151467|gb|EDW66901.1| GJ23369 [Drosophila virilis]
Length = 356
Score = 211 bits (536), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 102/217 (47%), Positives = 146/217 (67%), Gaps = 8/217 (3%)
Query: 35 PPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAV 94
PP +PWVEKYRP+S+ DV ++V + + LP++LLYGPPGTGKTSTILA
Sbjct: 31 PP----APWVEKYRPRSVDDVVEQSEVVAVLRKCVEGADLPNMLLYGPPGTGKTSTILAA 86
Query: 95 ARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKA----SVKLVLLDEA 150
AR+++G Y + ILELNASD+RGI+VVR +I++FA + + K+++LDEA
Sbjct: 87 ARQIFGDMYRDRILELNASDERGINVVRTKIKNFAQLTASNVRPDGRSCPPFKIIVLDEA 146
Query: 151 DAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLK 210
D+MT AQ ALRR +EK +++TRF LICN V++II + SRC++FRF L + RL+
Sbjct: 147 DSMTHAAQAALRRTMEKESRSTRFCLICNYVSRIIVPITSRCSKFRFKALGETQIIARLQ 206
Query: 211 HVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTH 247
H+ E EG+ + ++VR+ GDMR+A+ LQS +
Sbjct: 207 HICELEGVRIDPDAYKSIVRISGGDMRRAITTLQSCY 243
>gi|406695817|gb|EKC99116.1| DNA replication factor (activator 1 subunit) [Trichosporon asahii
var. asahii CBS 8904]
Length = 389
Score = 211 bits (536), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 108/231 (46%), Positives = 152/231 (65%), Gaps = 13/231 (5%)
Query: 37 DIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVAR 96
D K PWVEKYRP+++ DV++ + V + + LPH+L YGPPGTGKTSTILA+AR
Sbjct: 14 DPKLQPWVEKYRPKTIDDVSSQDNTVAVLRKALMSTNLPHMLFYGPPGTGKTSTILALAR 73
Query: 97 KLYGAQ-YHNMILELNASDDRGIDVVRQQIQDFA-STQSFSFGVKA--------SVKLVL 146
+L+G + + +LELNASD+RGI VVR++I+ FA T + GV + KL++
Sbjct: 74 QLFGPDLFKSRVLELNASDERGISVVREKIKTFARETPRHNPGVASDGKEYPCPPYKLII 133
Query: 147 LDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVT 206
LDEAD+MT+DAQ ALRR++E Y++ TRF L+CN V +II + SRC++FRF PLE
Sbjct: 134 LDEADSMTQDAQSALRRIMETYSRITRFCLVCNYVTRIIEPVASRCSKFRFRPLEQSSSQ 193
Query: 207 ERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQST---HMASQQIT 254
R++ + E EG+ G L +++L GD+RKA+ LQ+ H AS T
Sbjct: 194 ARMEMIAENEGVQADPGVLELILQLAGGDLRKAITYLQTAQRLHQASDPPT 244
>gi|18976465|ref|NP_577822.1| replication factor C small subunit [Pyrococcus furiosus DSM 3638]
gi|397652193|ref|YP_006492774.1| replication factor C small subunit [Pyrococcus furiosus COM1]
gi|42559506|sp|Q8U4J3.1|RFCS_PYRFU RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit;
AltName: Full=PfuRFC small subunit; Contains: RecName:
Full=Pfu RFC intein
gi|18892004|gb|AAL80217.1| replication factor C, small subunit [Pyrococcus furiosus DSM 3638]
gi|393189784|gb|AFN04482.1| replication factor C small subunit [Pyrococcus furiosus COM1]
Length = 852
Score = 211 bits (536), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 104/272 (38%), Positives = 176/272 (64%), Gaps = 3/272 (1%)
Query: 82 PPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKAS 141
P T+ LA+AR+L+G + + LELNASD+RGI+V+R+++++FA T+ AS
Sbjct: 579 PTVVHNTTAALALARELFGENWRHNFLELNASDERGINVIREKVKEFARTKPIG---GAS 635
Query: 142 VKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLE 201
K++ LDEADA+T+DAQ ALRR +E ++ N RF L CN +KII +QSRC FRF PL
Sbjct: 636 FKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLR 695
Query: 202 PVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLC 261
+ +RL+++ E EGL++TE GL A++ + GDMR+A+NILQ+ ++IT+E V++
Sbjct: 696 DEDIAKRLRYIAENEGLELTEEGLQAILYIAEGDMRRAINILQAAAALDKKITDENVFMV 755
Query: 262 TGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVR 321
P+DI ++ L +F + +++ E+ +++GL+ D++ ++ VF + + +
Sbjct: 756 ASRARPEDIREMMLLALKGNFLKAREKLREILLKQGLSGEDVLVQMHKEVFNLPIEEPKK 815
Query: 322 VRLMNDLADIEYRLSFGCNDKLQLGSIISTFT 353
V L + + + +RL G N+ +QL ++++ FT
Sbjct: 816 VLLADKIGEYNFRLVEGANEIIQLEALLAQFT 847
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 27/49 (55%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTST 90
PWVEKYRPQ L D+ IV + +PHLL GPPG GK T
Sbjct: 14 PWVEKYRPQRLDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKCLT 62
>gi|110590957|pdb|2CHG|A Chain A, Replication Factor C Domains 1 And 2
gi|110590958|pdb|2CHG|B Chain B, Replication Factor C Domains 1 And 2
gi|110590959|pdb|2CHG|C Chain C, Replication Factor C Domains 1 And 2
gi|110590960|pdb|2CHG|D Chain D, Replication Factor C Domains 1 And 2
Length = 226
Score = 210 bits (535), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 99/222 (44%), Positives = 141/222 (63%), Gaps = 3/222 (1%)
Query: 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 102
WVEKYRP++L +V +++ + +PHLL GPPGTGKT+T +A+AR L+G
Sbjct: 7 WVEKYRPRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGEN 66
Query: 103 YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALR 162
+ + +E+NASD+RGIDVVR +I++FA T A K++ LDEADA+T DAQ ALR
Sbjct: 67 WRDNFIEMNASDERGIDVVRHKIKEFARTAPIG---GAPFKIIFLDEADALTADAQAALR 123
Query: 163 RVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTE 222
R +E Y+K+ RF L CN V++II +QSRC FRF P+ + +RL + E EG+ +TE
Sbjct: 124 RTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEKEGVKITE 183
Query: 223 GGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGN 264
GL AL+ + GD RKA+N LQ + + + +Y T
Sbjct: 184 DGLEALIYISGGDFRKAINALQGAAAIGEVVDADTIYQITAT 225
>gi|429859273|gb|ELA34061.1| activator 1 37 kda subunit [Colletotrichum gloeosporioides Nara
gc5]
Length = 361
Score = 210 bits (535), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 123/315 (39%), Positives = 181/315 (57%), Gaps = 14/315 (4%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP L DV + + +D + + E +PH+++ G PG GKT+++L +AR+L G
Sbjct: 38 PWVEKYRPVFLDDVVGNTETIDRLKIIAKEGNMPHVIISGMPGIGKTTSVLCLARQLLGD 97
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFAL 161
Y +LELNASD+RGIDVVR +I+ FA Q + KLV+LDEAD+MT AQ AL
Sbjct: 98 SYKEAVLELNASDERGIDVVRNRIKGFA--QKKVTLPQGRHKLVILDEADSMTSGAQQAL 155
Query: 162 RRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVT 221
RR +E Y+ TRFA CNQ NKII LQSRC R+A L V +RL +IEAE ++ +
Sbjct: 156 RRTMEIYSNTTRFAFACNQSNKIIEPLQSRCAILRYARLTDEQVVKRLLQIIEAEKVEYS 215
Query: 222 EGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQI---SYWLL 278
+ GLAALV GDMR+A+N LQST ++ + V+ +P P ++ + Y
Sbjct: 216 DDGLAALVFSAEGDMRQAINNLQSTFAGFGFVSGDNVFKVVDSPHPIKVQAMLKACYEGN 275
Query: 279 NESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPS---DVRVRLMNDLADIEYRL 335
+S DS + + ++ G + DI+ TMF +P+ ++ + ++ ++
Sbjct: 276 VDSALDSLRELWDL----GYSSHDIIS--TMFKVTKTIPTLSEHSKLEFIKEIGFTHMKI 329
Query: 336 SFGCNDKLQLGSIIS 350
G LQL ++
Sbjct: 330 LEGVQTLLQLSGCVA 344
>gi|358401379|gb|EHK50685.1| hypothetical protein TRIATDRAFT_157714 [Trichoderma atroviride IMI
206040]
Length = 357
Score = 210 bits (535), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 122/316 (38%), Positives = 182/316 (57%), Gaps = 16/316 (5%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP L DV + + ++ + + E +PH+++ G PG GKT+++L +AR+L G
Sbjct: 34 PWVEKYRPVFLDDVVGNTETIERLKIIAKEGNMPHVIISGMPGIGKTTSVLCLARQLLGE 93
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQ-SFSFGVKASVKLVLLDEADAMTKDAQFA 160
Y +LELNASD+RGIDVVR +I+ FA + + G KLV+LDEAD+MT AQ A
Sbjct: 94 SYKEAVLELNASDERGIDVVRNRIKGFAQKKVTLPAGRH---KLVILDEADSMTSGAQQA 150
Query: 161 LRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDV 220
LRR +E Y+ TRFA CNQ NKII LQSRC R+A L V +RL +IEAE ++
Sbjct: 151 LRRTMEIYSNTTRFAFACNQSNKIIEPLQSRCAILRYAKLTDEQVVKRLMQIIEAEKVEY 210
Query: 221 TEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQI---SYWL 277
++ GLAALV GDMR+A+N LQST ++ + V+ +P P ++ + Y
Sbjct: 211 SDDGLAALVFSAEGDMRQAINNLQSTWAGFGFVSGDNVFKVVDSPHPIKVQAMLKACYEG 270
Query: 278 LNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPS---DVRVRLMNDLADIEYR 334
+S D+ + + ++ G + DI+ TMF MP+ ++ + ++ +
Sbjct: 271 NVDSALDTLRELWDL----GYSSHDIIS--TMFKVTKTMPTLSEHSKLEFIREIGFTHMK 324
Query: 335 LSFGCNDKLQLGSIIS 350
+ G LQL ++
Sbjct: 325 ILEGVQTLLQLSGCVA 340
>gi|326512276|dbj|BAJ96119.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 335
Score = 210 bits (535), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 118/316 (37%), Positives = 181/316 (57%), Gaps = 5/316 (1%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP +ADV + D V ++ + + +P+L+L GPPGTGKT++ILA+A ++ G
Sbjct: 19 PWVEKYRPSRVADVVGNADAVSRLEVIARDGNMPNLILSGPPGTGKTTSILALAHEMLGP 78
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQ-SFSFGVKASVKLVLLDEADAMTKDAQFA 160
Y +LELNASDDRG+DVVR +I+ FA + + G K+V+LDEAD+MT AQ A
Sbjct: 79 SYREGVLELNASDDRGLDVVRNKIKMFAQKKVTLPPGRH---KIVILDEADSMTTGAQQA 135
Query: 161 LRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDV 220
LRR +E Y+ TRFAL CN +KII +QSRC RF+ L + RL V+ AE +
Sbjct: 136 LRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLSDQEILGRLMVVVAAEKVPY 195
Query: 221 TEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNE 280
GL A++ +GDMR+ALN LQ+T + + +E V+ P P ++ + +L+
Sbjct: 196 VPEGLEAIIFTADGDMRQALNNLQATVSGFRFVNQENVFKVCDQPHPLHVKSMVKNVLDG 255
Query: 281 SFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCN 340
F ++ + ++ G + DI+ + + M +++ L+ + R+ G
Sbjct: 256 KFDEACSGLKQL-YDLGYSPTDIITTLFRVIKNYDMAEFLKLELLKETGFAHMRICDGVG 314
Query: 341 DKLQLGSIISTFTQAR 356
LQL +++ F R
Sbjct: 315 SFLQLSGLLAKFALVR 330
>gi|71004420|ref|XP_756876.1| hypothetical protein UM00729.1 [Ustilago maydis 521]
gi|46095885|gb|EAK81118.1| hypothetical protein UM00729.1 [Ustilago maydis 521]
Length = 343
Score = 210 bits (535), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 117/315 (37%), Positives = 180/315 (57%), Gaps = 6/315 (1%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP L DV ++D +D + + + PHLL+ G PG GKT+++L +AR L G
Sbjct: 23 PWVEKYRPLRLDDVVGNKDTIDRLKVIQKDGNCPHLLISGLPGIGKTTSVLCLARALLGE 82
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQ-SFSFGVKASVKLVLLDEADAMTKDAQFA 160
Y +LELNASD+RG+DVVR +I+ FA + S G K+++LDEAD+MT AQ A
Sbjct: 83 AYKEGVLELNASDERGVDVVRNKIKTFAQKKVSLPPGRH---KIIILDEADSMTPAAQQA 139
Query: 161 LRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDV 220
LRR +E Y+ TRF CNQ NKII +QSRC R+A + H+ +RL + E E ++
Sbjct: 140 LRRTMEIYSNTTRFCFACNQSNKIIEPIQSRCAILRYAKVRDEHILKRLLEICEMENVEY 199
Query: 221 TEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNE 280
++ GLAA++ GDMR+A+N LQST ++ + V+ P P I I +
Sbjct: 200 SDEGLAAIIFTTEGDMRQAINNLQSTWTGLGFVSPDNVFKVCDQPHPFLIRSILLACKDG 259
Query: 281 SFADSFKRISEMKMRKGLALVDIVREVTMFVFKI-KMPSDVRVRLMNDLADIEYRLSFGC 339
++ +++ E+ KG A VDIV + V + +P ++ + ++ ++ G
Sbjct: 260 HVDEALEKLDEIS-SKGYAAVDIVTTLFRVVKTLDAIPEATKLDFIKEIGWTHIKILEGV 318
Query: 340 NDKLQLGSIISTFTQ 354
+QLG +++ +
Sbjct: 319 ATLVQLGGLLARLCK 333
>gi|336266754|ref|XP_003348144.1| hypothetical protein SMAC_03989 [Sordaria macrospora k-hell]
gi|380091080|emb|CCC11286.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 357
Score = 210 bits (535), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 107/231 (46%), Positives = 150/231 (64%), Gaps = 4/231 (1%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP L DV + + ++ + + E +PH+++ G PG GKT+++L +AR+L G
Sbjct: 34 PWVEKYRPVFLDDVVGNTETIERLKIIAKEGNMPHVIISGMPGIGKTTSVLCLARQLLGD 93
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQ-SFSFGVKASVKLVLLDEADAMTKDAQFA 160
Y +LELNASD+RGI+VVRQ+I+ FA + + G K+V+LDEAD+MT AQ A
Sbjct: 94 AYKEAVLELNASDERGIEVVRQRIKGFAQKKVTLPPGRH---KIVILDEADSMTSGAQQA 150
Query: 161 LRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDV 220
LRR +E Y+ TRFA CNQ NKII LQSRC R+A L V +RL +IEAE ++
Sbjct: 151 LRRTMEIYSNTTRFAFACNQSNKIIEPLQSRCAILRYAKLTDAQVVKRLLQIIEAEKVEY 210
Query: 221 TEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIE 271
++ GLAALV GDMR+A+N LQSTH ++ + V+ +P P ++
Sbjct: 211 SDDGLAALVFSAEGDMRQAINNLQSTHAGFGFVSGDNVFKVVDSPHPIKVQ 261
>gi|168030360|ref|XP_001767691.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162681011|gb|EDQ67442.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 338
Score = 210 bits (535), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 121/320 (37%), Positives = 189/320 (59%), Gaps = 9/320 (2%)
Query: 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 102
WVEKYRP+ + DVA ++V T+ LPHLL YGPPGTGKT+T LA+ +L+G +
Sbjct: 11 WVEKYRPRKVKDVAHQEEVVRTLTNTLETGNLPHLLFYGPPGTGKTTTALAICHQLFGPE 70
Query: 103 -YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKA----SVKLVLLDEADAMTKDA 157
Y +LELNASDDRGI+VVR +I+DFA + GV K+++LDEAD+MT+DA
Sbjct: 71 LYKTRVLELNASDDRGINVVRTKIKDFAGV-AVGAGVSGYPCPPFKVLILDEADSMTEDA 129
Query: 158 QFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEG 217
Q ALRR +E Y+K TRF ICN V++II L SRC +FRF PL + R++++ + EG
Sbjct: 130 QNALRRTMENYSKVTRFCFICNYVSRIIEPLASRCAKFRFKPLLENVMQNRIQYICQEEG 189
Query: 218 LDVTEGGLAALVRLCNGDMRKALNILQ-STHMASQQITEEAVYLCTGNPLPKDIEQISYW 276
L + + L+ L R+ GD+R+A+ LQ + + I+ + + +G +E +
Sbjct: 190 LKLDQEALSTLSRVSEGDLRRAITCLQCAVRLYGSNISSKEIISVSGIVPDSVLEGLLKA 249
Query: 277 LLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDV-RVRLMNDLADIEYRL 335
+ F + + + ++ + +G + I+ ++ FV + SD+ + R+ LA+ + L
Sbjct: 250 CQSGQFDLAHQEVRDI-IAEGHPVSQILSQLFDFVVQSPNISDIQKARITERLAETDKCL 308
Query: 336 SFGCNDKLQLGSIISTFTQA 355
G ++ LQL + S +A
Sbjct: 309 IDGADEYLQLMDVASNTMRA 328
>gi|388504120|gb|AFK40126.1| unknown [Medicago truncatula]
Length = 333
Score = 210 bits (535), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 117/322 (36%), Positives = 180/322 (55%), Gaps = 5/322 (1%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP + D+ + D V + + + +P+L+L GPPGTGKT++ILA+A +L G
Sbjct: 16 PWVEKYRPSKVVDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGP 75
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQ-SFSFGVKASVKLVLLDEADAMTKDAQFA 160
Y +LELNASDDRGIDVVR +I+ FA + + G K+V+LDEAD+MT AQ A
Sbjct: 76 NYREAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRH---KVVILDEADSMTSGAQQA 132
Query: 161 LRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDV 220
LRR +E Y+ +TRFAL CN +KII +QSRC RF+ L + RL V++AE +
Sbjct: 133 LRRTMEIYSNSTRFALACNTSSKIIEPIQSRCAIVRFSRLSDQEILGRLMVVVQAEKVPY 192
Query: 221 TEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNE 280
GL A++ +GDMR+ LN LQ+T Q + + V+ P P ++ + ++
Sbjct: 193 VPEGLEAIIFTADGDMRQGLNNLQATFSGFQFVNQANVFKVCDQPHPLHVKNMVRNVIEG 252
Query: 281 SFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCN 340
+F ++ + ++ G + DI+ + + M +++ M + R+ G
Sbjct: 253 NFDEACSGLKQL-YDLGYSPTDIITTLFRIIKSYDMAEYLKLEFMKETGFAHMRICDGVG 311
Query: 341 DKLQLGSIISTFTQARSAIVAA 362
LQ+ +++ F R AA
Sbjct: 312 SYLQMCGLLAKFALVRDTANAA 333
>gi|398390788|ref|XP_003848854.1| replication factor C subunit 4 [Zymoseptoria tritici IPO323]
gi|339468730|gb|EGP83830.1| hypothetical protein MYCGRDRAFT_76271 [Zymoseptoria tritici IPO323]
Length = 351
Score = 210 bits (535), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 121/334 (36%), Positives = 186/334 (55%), Gaps = 11/334 (3%)
Query: 25 NGKNVIVSGTPPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPG 84
NG G P + + PWVEKYRP L D+ + + ++ + + + +PH+++ G PG
Sbjct: 13 NGVKANTRGAPANYEL-PWVEKYRPVFLDDIVGNTETIERLKIIAKDGNMPHVIISGMPG 71
Query: 85 TGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQ-SFSFGVKASVK 143
GKT+++L +AR+L G Y +LELNASD+RGIDVVR +I+ FA + + G + K
Sbjct: 72 IGKTTSVLCLARQLLGDAYKEAVLELNASDERGIDVVRNRIKGFAQKKVTLPAGRQ---K 128
Query: 144 LVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPV 203
+V+LDEAD+MT AQ ALRR +E Y+ TRFA CNQ NKII LQSRC R+A L
Sbjct: 129 IVILDEADSMTSGAQQALRRTMEIYSGTTRFAFACNQSNKIIEPLQSRCAILRYARLTDG 188
Query: 204 HVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTG 263
V +RL + +AE ++ ++ G+AALV GDMR+A+N LQSTH + + V+
Sbjct: 189 QVVKRLYQICQAEKVEYSDDGIAALVFSAEGDMRQAINNLQSTHAGFGFVNGDNVFRVVD 248
Query: 264 NPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPS---DV 320
+P P ++ + + D+ + E+ G + DI+ TMF +PS
Sbjct: 249 SPHPIKVQAMIKNCQEQKIDDALDGLKEL-WDLGYSSHDIIS--TMFKVTKTIPSLSEHT 305
Query: 321 RVRLMNDLADIEYRLSFGCNDKLQLGSIISTFTQ 354
++ + ++ R+ G LQL ++ +
Sbjct: 306 KLEFIREIGFTHMRILEGMQTYLQLAGCVAKLCK 339
>gi|62858553|ref|NP_001016363.1| replication factor C (activator 1) 4, 37kDa [Xenopus (Silurana)
tropicalis]
gi|89266993|emb|CAJ81288.1| replication factor C (activator 1) 4, 37kDa [Xenopus (Silurana)
tropicalis]
gi|134026004|gb|AAI35433.1| replication factor C (activator 1) 4, 37kDa [Xenopus (Silurana)
tropicalis]
Length = 360
Score = 210 bits (535), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 126/345 (36%), Positives = 195/345 (56%), Gaps = 13/345 (3%)
Query: 20 LKPKDNGKNVIVSGTPPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLL 79
+K K + +G K PWVEKYRP+ + +VA ++V + + LP+LL
Sbjct: 16 VKDKASASGTGSTGESKKQKPVPWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLF 75
Query: 80 YGPPGTGKTSTILAVARKLYGAQ-YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGV 138
YGPPGTGKTSTILA +R+LYG + + +LELNASD+RGI VVR+++++FA Q G
Sbjct: 76 YGPPGTGKTSTILAASRELYGPELFRQRVLELNASDERGIQVVREKVKNFA--QLTVGGT 133
Query: 139 KAS------VKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRC 192
++ K+V+LDEAD+MT AQ ALRR +EK +K TRF LICN V++II L SRC
Sbjct: 134 RSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRC 193
Query: 193 TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTH--MAS 250
++FRF PL T+RL + E E + +T ++ LV + GD+RKA+ LQS
Sbjct: 194 SKFRFKPLADKIQTQRLLSICEKENVKITNEAISCLVEVSEGDLRKAITFLQSATRLTGG 253
Query: 251 QQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMF 310
++ITEE V G +PK+ + + + + + G A +V ++
Sbjct: 254 KEITEEIVTEIAG-VVPKETLDCVLVACQSGSFEKLETVVKNLINNGHAATQLVNQLHDV 312
Query: 311 VFKIKMPSDVRVRLMND-LADIEYRLSFGCNDKLQLGSIISTFTQ 354
+ + +D + + + LA+++ L+ G ++ LQ+ + + Q
Sbjct: 313 ILERGDLTDKQKAFITEKLAEVDKCLADGADEYLQMLGLFAVVMQ 357
>gi|224000545|ref|XP_002289945.1| replication factor C 37 KD subunit [Thalassiosira pseudonana
CCMP1335]
gi|220975153|gb|EED93482.1| replication factor C 37 KD subunit [Thalassiosira pseudonana
CCMP1335]
Length = 346
Score = 210 bits (535), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 116/264 (43%), Positives = 159/264 (60%), Gaps = 13/264 (4%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLY-G 100
PWVE+YRP+SL DV+ +I+ T+ NRLPHLL YGPPGTGKTS LA+ R+L+
Sbjct: 16 PWVERYRPKSLQDVSHQGEIISTLKNAVETNRLPHLLFYGPPGTGKTSVALALCRQLFEP 75
Query: 101 AQYHNMILELNASDDRGIDVVRQQIQDFAS----TQSFSFGVKASVKLVLLDEADAMTKD 156
+Q +LELNASD+RGI VVR +I+ FAS T++ K+++LDEAD +T+D
Sbjct: 76 SQLRRRVLELNASDERGISVVRDKIKHFASLAIDTETTKKYPNPPFKIIILDEADTVTRD 135
Query: 157 AQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAE 216
AQ ALRRVIE Y+K TRF LICN V +II L SRC +FRF PL + R+K++ E
Sbjct: 136 AQAALRRVIEAYSKVTRFILICNYVTRIIEPLASRCAKFRFQPLPVESMKARIKYIAHEE 195
Query: 217 GLDVTEGG----LAALVRLCNGDMRKALNILQSTHM----ASQQITEEAVYLCTGNPLPK 268
EG + ++ L GDMR+A+ LQS H A + I ++++ G P P
Sbjct: 196 HCQFEEGKEEEVVDEILTLSQGDMRRAVTTLQSAHSLSGGAGEVIKKDSIAEMAGLPPPA 255
Query: 269 DIEQISYWLLNESFADSFKRISEM 292
I+ + L F D K + ++
Sbjct: 256 LIDGLIEVLRTGKFDDMKKYVMDI 279
>gi|14590058|ref|NP_142122.1| replication factor C small subunit [Pyrococcus horikoshii OT3]
gi|42559333|sp|O57852.1|RFCS_PYRHO RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit;
Contains: RecName: Full=Pho RFC intein
gi|3256498|dbj|BAA29181.1| 855aa long hypothetical replication factor C subunit [Pyrococcus
horikoshii OT3]
Length = 855
Score = 210 bits (535), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 103/272 (37%), Positives = 176/272 (64%), Gaps = 3/272 (1%)
Query: 82 PPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKAS 141
P T+ LA++R+L+G + + LELNASD+RGI+V+R+++++FA T+ AS
Sbjct: 581 PTVVHNTTAALALSRELFGENWRHNFLELNASDERGINVIREKVKEFARTKPIG---GAS 637
Query: 142 VKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLE 201
K++ LDEADA+T+DAQ ALRR +E ++ N RF L CN +KII +QSRC FRF PL
Sbjct: 638 FKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLR 697
Query: 202 PVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLC 261
+ +RL+++ E EGL++TE GL A++ + GDMR+A+NILQ+ ++IT+E V++
Sbjct: 698 DEDIAKRLRYIAENEGLELTEEGLQAILYIAEGDMRRAINILQAAAALDKKITDENVFMV 757
Query: 262 TGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVR 321
P+DI ++ L +F + +++ E+ +++GL+ D++ ++ VF + + +
Sbjct: 758 ASRARPEDIREMMLLALKGNFLKAREKLREILLKQGLSGEDVLIQMHKEVFNLPIDEPTK 817
Query: 322 VRLMNDLADIEYRLSFGCNDKLQLGSIISTFT 353
V L + + + +RL G N+ +QL ++++ FT
Sbjct: 818 VYLADKIGEYNFRLVEGANEMIQLEALLAQFT 849
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 27/49 (55%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTST 90
PWVEKYRPQ L ++ IV + +PHLL GPPG GK T
Sbjct: 16 PWVEKYRPQRLDEIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKCLT 64
>gi|405121785|gb|AFR96553.1| activator 1 40 kDa subunit [Cryptococcus neoformans var. grubii
H99]
Length = 347
Score = 210 bits (534), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 123/341 (36%), Positives = 190/341 (55%), Gaps = 10/341 (2%)
Query: 20 LKPKDNGKNVIVSGTPPDIKAS----PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLP 75
+ + + N +S T I A PWVEKYRP L D+ + D +D + + + +P
Sbjct: 1 MASRSSSNNKGISATAKHIDAEGYEMPWVEKYRPVLLDDIVGNSDTIDRLKVIAEDGNVP 60
Query: 76 HLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQ-SF 134
H+++ G PG GKT++I +A L G Y +LELNASD+RGIDVVR +I+ FA + +
Sbjct: 61 HIIISGMPGIGKTTSIHCLAHALLGEAYKEGVLELNASDERGIDVVRNKIKSFAQRKVTL 120
Query: 135 SFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTR 194
G K+++LDEAD+MT AQ ALRR +E Y+ TRFAL CN NKII +QSRC
Sbjct: 121 PPGRH---KIIILDEADSMTAGAQQALRRTMEIYSNTTRFALACNMSNKIIEPIQSRCAI 177
Query: 195 FRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQIT 254
R++ L V +RLK + + E + + GLAAL+ GDMR+A+N LQST +
Sbjct: 178 LRYSKLNDAEVLKRLKEICDMESIKYNDEGLAALIFTAEGDMRQAINNLQSTWSGFGFVN 237
Query: 255 EEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKI 314
++ V+ P P I Q+ + ++ RI+ + +G + VDIV V V +
Sbjct: 238 QDNVFKICDQPHPIVIRQMIKDCQHGKIDEALARINAL-WDQGYSAVDIVVTVFRVVKGM 296
Query: 315 -KMPSDVRVRLMNDLADIEYRLSFGCNDKLQLGSIISTFTQ 354
++P +++ + ++ R+ G +QLG++I+ T+
Sbjct: 297 EELPEYLKLEFIREIGWTHMRVLEGVGTLVQLGAMIARLTK 337
>gi|320593090|gb|EFX05499.1| aaa ATPase domain containing protein [Grosmannia clavigera kw1407]
Length = 357
Score = 210 bits (534), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 122/317 (38%), Positives = 177/317 (55%), Gaps = 10/317 (3%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP L D+ + + ++ + + + +PH+++ G PG GKT+++L +AR+L G
Sbjct: 35 PWVEKYRPAFLDDIVGNTETIERLKIIAKDGNMPHIIISGMPGIGKTTSVLCLARQLLGD 94
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQ-SFSFGVKASVKLVLLDEADAMTKDAQFA 160
Y +LELNASD+RGIDVVR +I+ FA + + G K+V+LDEAD+MT AQ A
Sbjct: 95 AYKEAVLELNASDERGIDVVRNRIKGFAQKKVTLPAGRH---KIVILDEADSMTSGAQQA 151
Query: 161 LRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDV 220
LRR +E Y+ TRFA CNQ NKII LQSRC R+A L V +RL +IEAE +
Sbjct: 152 LRRTMEIYSNTTRFAFACNQSNKIIEPLQSRCAILRYARLTDAQVVKRLLQIIEAEQVRY 211
Query: 221 TEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNE 280
++ GLAALV GDMR+A+N LQSTH ++ + V+ P P + Q +E
Sbjct: 212 SDDGLAALVFSAEGDMRQAINNLQSTHAGFGFVSGDNVFKVVDAPHPIKV-QAMLKACHE 270
Query: 281 SFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPS---DVRVRLMNDLADIEYRLSF 337
D+ I R G + DI+ TMF MP ++ + ++ ++
Sbjct: 271 GNVDAALDILHELWRLGYSSHDIIS--TMFRVTKTMPGLSEHAKLEFIREIGFTHMKILE 328
Query: 338 GCNDKLQLGSIISTFTQ 354
G LQL ++ +
Sbjct: 329 GVQTLLQLSGCLARLCK 345
>gi|310792410|gb|EFQ27937.1| replication factor C [Glomerella graminicola M1.001]
Length = 361
Score = 210 bits (534), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 123/315 (39%), Positives = 181/315 (57%), Gaps = 14/315 (4%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP L DV + + +D + + E +PH+++ G PG GKT+++L +AR+L G
Sbjct: 38 PWVEKYRPVFLDDVVGNTETIDRLKIIAKEGNMPHVIISGMPGIGKTTSVLCLARQLLGD 97
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFAL 161
Y +LELNASD+RGIDVVR +I+ FA Q + KLV+LDEAD+MT AQ AL
Sbjct: 98 SYKEAVLELNASDERGIDVVRNRIKGFA--QKKVTLPQGRHKLVILDEADSMTSGAQQAL 155
Query: 162 RRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVT 221
RR +E Y+ TRFA CNQ NKII LQSRC R+A L V +RL +IEAE ++ +
Sbjct: 156 RRTMEIYSNTTRFAFACNQSNKIIEPLQSRCAILRYARLTDEQVVKRLLQIIEAEKVEYS 215
Query: 222 EGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQI---SYWLL 278
+ GLAALV GDMR+A+N LQST ++ + V+ +P P ++ + Y
Sbjct: 216 DDGLAALVFSAEGDMRQAINNLQSTFAGFGFVSGDNVFKVVDSPHPIKVQAMLKACYEGN 275
Query: 279 NESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPS---DVRVRLMNDLADIEYRL 335
+S DS + + ++ G + DI+ TMF +P+ ++ + ++ ++
Sbjct: 276 IDSALDSLRELWDL----GYSSHDIIS--TMFKVTKTIPTLSEHSKLEFIKEIGFTHMKI 329
Query: 336 SFGCNDKLQLGSIIS 350
G LQL ++
Sbjct: 330 LEGVQTLLQLSGCVA 344
>gi|366988801|ref|XP_003674168.1| hypothetical protein NCAS_0A12300 [Naumovozyma castellii CBS 4309]
gi|342300031|emb|CCC67788.1| hypothetical protein NCAS_0A12300 [Naumovozyma castellii CBS 4309]
Length = 350
Score = 210 bits (534), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 121/332 (36%), Positives = 194/332 (58%), Gaps = 19/332 (5%)
Query: 39 KASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKL 98
++ PWVEKYRP+ L D+AA V + + LPH+L YGPPGTGKTSTILA+A++L
Sbjct: 21 QSKPWVEKYRPKQLDDIAAQGHAVTVLKKTLQSANLPHMLFYGPPGTGKTSTILALAKEL 80
Query: 99 YGAQY-HNMILELNASDDRGIDVVRQQIQDFA-------STQSFSFGVKASVKLVLLDEA 150
+G + + ILELNASD+RGI +VR+++++FA S K+++LDEA
Sbjct: 81 FGPELMKSRILELNASDERGISIVREKVKNFARLTVSKPSKNDLENYPCPPYKIIILDEA 140
Query: 151 DAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLK 210
D+MT DAQ ALRR +E Y+ TRF LICN V +II L SRC++FRF PL+ + +RL+
Sbjct: 141 DSMTSDAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASRCSKFRFKPLDATNAIDRLR 200
Query: 211 HVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQST-----HMASQQITEEAVYLCTGNP 265
+V E + + L ++ + GD+R+A+ +LQS + ++ +T + V G
Sbjct: 201 YVATEESVSYEDDVLKTILDISAGDLRRAITLLQSAAKRIQYTGAENVTSQNVKELAG-V 259
Query: 266 LPKDI-EQISYWLLNESFADSFKRISEMKMR--KGLALVDIVREVTMFVFKIKMPSDVRV 322
+P DI + I + N++ D + ++E G A++D + + ++ + + +
Sbjct: 260 VPDDILKMIVEKVSNKNVNDIIEYVNEFTKSGWSGAAVIDQLHD--YYISNDEYDTAFKN 317
Query: 323 RLMNDLADIEYRLSFGCNDKLQLGSIISTFTQ 354
+ L D + +LS G N+ LQL +++ +Q
Sbjct: 318 NVSMILFDTDAKLSNGTNEHLQLLNLLVKISQ 349
>gi|118783134|ref|XP_312782.3| AGAP003093-PA [Anopheles gambiae str. PEST]
gi|116129067|gb|EAA08477.3| AGAP003093-PA [Anopheles gambiae str. PEST]
Length = 361
Score = 210 bits (534), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 108/212 (50%), Positives = 143/212 (67%), Gaps = 8/212 (3%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP+S+ DV ++V + S LP+LLLYGPPGTGKTSTILA AR+L+G
Sbjct: 37 PWVEKYRPKSVDDVVEQAEVVAVLRESLSTTDLPNLLLYGPPGTGKTSTILAAARQLFGD 96
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKAS------VKLVLLDEADAMTK 155
+ ILELNASDDRGI V+R +++ FA Q + G + K+V+LDEADAMT
Sbjct: 97 MFKERILELNASDDRGIAVIRNKVKTFA--QLTASGTRTDGKPCPPFKIVILDEADAMTH 154
Query: 156 DAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEA 215
AQ ALRR +EK TK TRF L+CN V++II + SRCT+FRF PL + ERL+++ +
Sbjct: 155 AAQAALRRTMEKETKTTRFCLVCNYVSRIIEPITSRCTKFRFKPLGEEKIIERLRYICDQ 214
Query: 216 EGLDVTEGGLAALVRLCNGDMRKALNILQSTH 247
EG+ V +G +V + GD+R+A+ LQS H
Sbjct: 215 EGVTVDDGVYKDIVDISGGDLRRAITTLQSCH 246
>gi|393220481|gb|EJD05967.1| P-loop containing nucleoside triphosphate hydrolase protein
[Fomitiporia mediterranea MF3/22]
Length = 370
Score = 210 bits (534), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 112/287 (39%), Positives = 177/287 (61%), Gaps = 18/287 (6%)
Query: 20 LKPKDNGKNVIVSGTPPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLL 79
LKP+ +G P ++ PWVEKYRP+++ DV++ IV + + + LPH+L
Sbjct: 3 LKPQTTKSAQKQAGADPALQ--PWVEKYRPKTIDDVSSQEHIVAVLQKTLTSTNLPHMLF 60
Query: 80 YGPPGTGKTSTILAVARKLYGA-QYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGV 138
YGPPGTGKTSTILA++R+L+G + N +LELNASD+RGI +VR++I++FA + V
Sbjct: 61 YGPPGTGKTSTILALSRQLFGPDNFKNRVLELNASDERGITIVREKIKNFARQTPRAQAV 120
Query: 139 KAS--------VKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQS 190
+ K+++LDEAD+MT DAQ ALRR++E Y + TRF L+CN V +II L S
Sbjct: 121 ASDGKTYPCPPYKIIILDEADSMTHDAQSALRRIMETYARITRFCLVCNYVTRIIEPLAS 180
Query: 191 RCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMAS 250
RC++FRF PL+ RL+H+ +AE + V ++ L+ + GD+R+++ LQS S
Sbjct: 181 RCSKFRFRPLDDSATKLRLQHIADAERVPVIPEVVSTLINVSGGDLRRSITYLQSASRLS 240
Query: 251 QQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKG 297
T+ + + +DI++I+ ++ + +SF R+ + + G
Sbjct: 241 SS-TDPPTEITS-----QDIQEIA-GVVPDRVVNSFGRVLGVDISDG 280
>gi|9453897|dbj|BAB03292.1| replication factor C small subunit precursor [Pyrococcus furiosus
DSM 3638]
Length = 268
Score = 210 bits (534), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 103/266 (38%), Positives = 175/266 (65%), Gaps = 3/266 (1%)
Query: 88 TSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLL 147
T+ LA+AR+L+G + + LELNASD+RGI+V+R+++++FA T+ AS K++ L
Sbjct: 1 TTAALALARELFGENWRHNFLELNASDERGINVIREKVKEFARTKPIG---GASFKIIFL 57
Query: 148 DEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTE 207
DEADA+T+DAQ ALRR +E ++ N RF L CN +KII +QSRC FRF PL + +
Sbjct: 58 DEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAK 117
Query: 208 RLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLP 267
RL+++ E EGL++TE GL A++ + GDMR+A+NILQ+ ++IT+E V++ P
Sbjct: 118 RLRYIAENEGLELTEEGLQAILYIAEGDMRRAINILQAAAALDKKITDENVFMVASRARP 177
Query: 268 KDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMND 327
+DI ++ L +F + +++ E+ +++GL+ D++ ++ VF + + +V L +
Sbjct: 178 EDIREMMLLALKGNFLKAREKLREILLKQGLSGEDVLVQMHKEVFNLPIEEPKKVLLADK 237
Query: 328 LADIEYRLSFGCNDKLQLGSIISTFT 353
+ + +RL G N+ +QL ++++ FT
Sbjct: 238 IGEYNFRLVEGANEIIQLEALLAQFT 263
>gi|428170599|gb|EKX39523.1| replication factor C, subunit RFC4 [Guillardia theta CCMP2712]
Length = 324
Score = 210 bits (534), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 110/227 (48%), Positives = 145/227 (63%), Gaps = 11/227 (4%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVE++RP S+A VA R +V T+ LPHLL YGPPGTGKTSTILA+A+ LYG
Sbjct: 3 PWVEQHRPSSIAQVAHQRHVVATLSSAVESGNLPHLLFYGPPGTGKTSTILALAKDLYGP 62
Query: 102 Q-YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKA----SVKLVLLDEADAMTKD 156
+ Y + +LELNASD+RGIDVVR +I+ FAS S + KLV+LDEAD MT D
Sbjct: 63 ELYKSRVLELNASDERGIDVVRNKIKHFASLAVSSSKSSSYPCPPFKLVILDEADCMTTD 122
Query: 157 AQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAE 216
AQ ALRR +E T+ TRF +ICN V++II + SRC +FRF P+ + ERL + + E
Sbjct: 123 AQSALRRTMETCTRVTRFCIICNYVSRIISPIASRCAKFRFQPVSTEVMLERLNMIADKE 182
Query: 217 GLDVTEGGLAALVRLCNGDMRKALNILQSTH------MASQQITEEA 257
G + ALV + GD+R+A+ ++Q+T+ M Q I E A
Sbjct: 183 GFQLPSDVTDALVNISGGDLRRAITMMQNTYILHGNSMKGQDIIENA 229
>gi|213402449|ref|XP_002171997.1| DNA replication factor C complex subunit Rfc4 [Schizosaccharomyces
japonicus yFS275]
gi|212000044|gb|EEB05704.1| DNA replication factor C complex subunit Rfc4 [Schizosaccharomyces
japonicus yFS275]
Length = 344
Score = 210 bits (534), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 118/318 (37%), Positives = 183/318 (57%), Gaps = 10/318 (3%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP L D+ + D + + + + +PH+++ G PG GKT+++L +A +L G+
Sbjct: 24 PWVEKYRPVVLDDIVGNEDTIARLKVIARDGNMPHMIISGMPGIGKTTSVLCLAHQLLGS 83
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQ-SFSFGVKASVKLVLLDEADAMTKDAQFA 160
Y +LELNASD+RGIDVVR +I+ FA + + G K+V+LDEAD+MT AQ A
Sbjct: 84 AYREGVLELNASDERGIDVVRNKIKGFAQKKVNLPPGRH---KIVILDEADSMTAGAQQA 140
Query: 161 LRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDV 220
LRR +E Y+ TRFAL CNQ NKII +QSRC R++ L + +RL + +AE + +
Sbjct: 141 LRRTMEIYSNTTRFALACNQSNKIIEPIQSRCAILRYSRLNEQQIQKRLSEICKAESVSI 200
Query: 221 TEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNE 280
T+ G+AAL+ GDMR+A+N LQST + E V+ P P + + ++
Sbjct: 201 TDDGMAALIMTAEGDMRQAINNLQSTVAGFDLVNSENVFKVADQPSPVAVLDMIRHCMHG 260
Query: 281 SFADSFKRISEMKMRKGLALVDIVREVTMF-VFKI--KMPSDVRVRLMNDLADIEYRLSF 337
+ +R+ + G + VDI+ TMF V K ++P R+ ++ ++ +
Sbjct: 261 DIDKALERLKGI-WGLGFSPVDII--TTMFRVVKTMNEVPEYSRLEMLREIGSAHMIVLE 317
Query: 338 GCNDKLQLGSIISTFTQA 355
G LQL ++I+ +A
Sbjct: 318 GVQTYLQLSALIARLAKA 335
>gi|58270226|ref|XP_572269.1| activator 1 41 kda subunit [Cryptococcus neoformans var. neoformans
JEC21]
gi|134117646|ref|XP_772457.1| hypothetical protein CNBL0720 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50255071|gb|EAL17810.1| hypothetical protein CNBL0720 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57228527|gb|AAW44962.1| activator 1 41 kda subunit, putative [Cryptococcus neoformans var.
neoformans JEC21]
Length = 363
Score = 210 bits (534), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 104/221 (47%), Positives = 147/221 (66%), Gaps = 10/221 (4%)
Query: 37 DIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVAR 96
D K PWVEKYRP+++ DV++ + V + + + LPH+L YGPPGTGKTSTILA+AR
Sbjct: 14 DPKLQPWVEKYRPKTIDDVSSQDNTVAVLRKALASTNLPHMLFYGPPGTGKTSTILALAR 73
Query: 97 KLYGAQ-YHNMILELNASDDRGIDVVRQQIQDFA-STQSFSFGVKA--------SVKLVL 146
+L+G + +LELNASD+RGI VVR++I+ FA T + V + KL++
Sbjct: 74 QLFGPDLFRARVLELNASDERGISVVREKIKSFARETPRHAPAVSSDGKEYPCPPFKLII 133
Query: 147 LDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVT 206
LDEAD+MT+DAQ ALRR++E Y+K TRF L+CN V +II L SRC++FRF PLE
Sbjct: 134 LDEADSMTQDAQSALRRIMETYSKITRFCLVCNYVTRIIEPLASRCSKFRFKPLEQGSTR 193
Query: 207 ERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTH 247
R++ + E EG+ G ++ ++ L GD+RKA+ LQ+
Sbjct: 194 ARMEMIAENEGVQTDPGVISLILELAGGDLRKAITYLQTAQ 234
>gi|378730119|gb|EHY56578.1| replication factor C subunit 4 [Exophiala dermatitidis NIH/UT8656]
Length = 352
Score = 210 bits (534), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 125/334 (37%), Positives = 188/334 (56%), Gaps = 17/334 (5%)
Query: 28 NVIVSGTPPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGK 87
N +G PD + PWVEKYRP L D+ + + ++ + + + +PH+++ G PG GK
Sbjct: 17 NAGANGATPDYEL-PWVEKYRPVYLDDIVGNSETIERLKIIAKDGNMPHVIISGMPGIGK 75
Query: 88 TSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQ-SFSFGVKASVKLVL 146
T++IL +AR L G Y +LELNASD+RGIDVVR +I+ FA + + G K+V+
Sbjct: 76 TTSILCLARTLLGDAYKEAVLELNASDERGIDVVRNRIKGFAQKKVTLPPGRH---KIVI 132
Query: 147 LDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVT 206
LDEAD+MT AQ ALRR +E Y+ TRFA CNQ NKII LQSRC R++ L V
Sbjct: 133 LDEADSMTSGAQQALRRTMEIYSNTTRFAFACNQSNKIIEPLQSRCAILRYSRLTDAQVV 192
Query: 207 ERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPL 266
+RL +IEAE + +E GLAALV GDMR+A+N LQST ++ + V+ +P
Sbjct: 193 QRLLQIIEAEKVQYSEDGLAALVFSAEGDMRQAINNLQSTWAGFGFVSGDNVFRVVDSPH 252
Query: 267 PKDIEQI--SYWLLN-ESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPS---DV 320
P ++ + + W +S D+ K + ++ G + DI+ TMF +P+
Sbjct: 253 PVKVQAMIKACWEGKIDSAVDTLKELWDL----GYSSHDIIS--TMFRVTKTIPTLSEHS 306
Query: 321 RVRLMNDLADIEYRLSFGCNDKLQLGSIISTFTQ 354
++ + ++ R+ G LQL ++ +
Sbjct: 307 KLEFIKEIGFTHMRILEGVQSFLQLSGCLAKLCR 340
>gi|15991286|dbj|BAB69675.1| replication factor C 40kDa subunit [Oryza sativa Japonica Group]
gi|116310007|emb|CAH67033.1| OSIGBa0139P06.6 [Oryza sativa Indica Group]
gi|218195393|gb|EEC77820.1| hypothetical protein OsI_17026 [Oryza sativa Indica Group]
Length = 335
Score = 210 bits (534), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 119/322 (36%), Positives = 182/322 (56%), Gaps = 5/322 (1%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP +ADV + D V + + + +P+L+L GPPGTGKT++IL++A +L G
Sbjct: 18 PWVEKYRPTRVADVVGNSDAVARLQVIARDGNMPNLILSGPPGTGKTTSILSLAHELLGP 77
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQ-SFSFGVKASVKLVLLDEADAMTKDAQFA 160
Y +LELNASDDRG+DVVR +I+ FA + + G K+V+LDEAD+MT AQ A
Sbjct: 78 SYREAVLELNASDDRGLDVVRNKIKMFAQKKVTLQPGRH---KIVILDEADSMTSGAQQA 134
Query: 161 LRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDV 220
LRR +E Y+ TRFAL CN +KII +QSRC RF+ L + RL V+ AE +
Sbjct: 135 LRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLSDQEILGRLMIVVAAEKVPY 194
Query: 221 TEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNE 280
GL A++ +GDMR+ALN LQ+T + + +E V+ P P ++ + +L+
Sbjct: 195 VPEGLEAIIFTADGDMRQALNNLQATVSGFRFVNQENVFKVCDQPHPLHVKNMVKNVLDG 254
Query: 281 SFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCN 340
F ++ + ++ G + DI+ + + M +++ L+ + R+ G
Sbjct: 255 KFDEACSALKQL-YDLGYSPTDIITTLFRVIKNYDMAEYLKLELLKETGFAHMRICDGVG 313
Query: 341 DKLQLGSIISTFTQARSAIVAA 362
LQL +++ F R A+
Sbjct: 314 SFLQLSGLLAKFALVRETAKAS 335
>gi|259486085|tpe|CBF83646.1| TPA: subunit of heteropentameric Replication factor C (RF-C)
(Eurofung) [Aspergillus nidulans FGSC A4]
Length = 387
Score = 210 bits (534), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 104/215 (48%), Positives = 144/215 (66%), Gaps = 11/215 (5%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYG- 100
PWVEKYRP++L DVAA + R + LPH+L YGPPGTGKTSTILA+A+ L+G
Sbjct: 35 PWVEKYRPKTLDDVAAQDHTTKVLQRTLQASNLPHMLFYGPPGTGKTSTILALAKSLFGP 94
Query: 101 AQYHNMILELNASDDRGIDVVRQQIQDFASTQ-SFSFGVKAS---------VKLVLLDEA 150
A Y + ILELNASD+RGI +VR++++ FA Q S G+ A K+++LDEA
Sbjct: 95 ALYRSRILELNASDERGIGIVREKVKGFARVQLSHPTGLDAEYFEKYPCPPFKIIILDEA 154
Query: 151 DAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLK 210
D+MT+DAQ ALRR +E+Y++ TRF L+CN V +II L SRC++FRF PL+ +RL
Sbjct: 155 DSMTQDAQSALRRTMEQYSRITRFCLVCNYVTRIIEPLASRCSKFRFKPLDNSAAGDRLA 214
Query: 211 HVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQS 245
+ + E L + G + L+ +GD+R+A+ LQS
Sbjct: 215 QIAQLEKLSLENGVVDKLISCSDGDLRRAITYLQS 249
>gi|171692201|ref|XP_001911025.1| hypothetical protein [Podospora anserina S mat+]
gi|170946049|emb|CAP72850.1| unnamed protein product [Podospora anserina S mat+]
Length = 357
Score = 210 bits (534), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 115/262 (43%), Positives = 159/262 (60%), Gaps = 13/262 (4%)
Query: 21 KPKDNGKNVIV---------SGTPPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSE 71
KP+ NG++ SG P PWVEKYRP L DV + + ++ + + +
Sbjct: 8 KPEANGESSTAAYKAQTANPSGNP--TYELPWVEKYRPVFLDDVVGNTETIERLKIIARD 65
Query: 72 NRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFAST 131
+PH+++ G PG GKT+++L +AR+L G Y +LELNASD+RGIDVVRQ+I+ FA
Sbjct: 66 GNMPHVIISGMPGIGKTTSVLCLARQLLGDAYKEAVLELNASDERGIDVVRQRIKGFA-- 123
Query: 132 QSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSR 191
Q + KLV+LDEAD+MT AQ ALRR +E Y+ TRFA CNQ NKII LQSR
Sbjct: 124 QKKVTLPQGRHKLVILDEADSMTSGAQQALRRTMEIYSNTTRFAFACNQSNKIIEPLQSR 183
Query: 192 CTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQ 251
C R+A L V +RL +I+AEG+ +E GLAALV GDMR+A+N LQST
Sbjct: 184 CAILRYAKLTDEQVVKRLLQIIDAEGVKFSEDGLAALVFSAEGDMRQAINNLQSTWAGFG 243
Query: 252 QITEEAVYLCTGNPLPKDIEQI 273
++ + V+ +P P ++ +
Sbjct: 244 FVSGDNVFKVVDSPHPIKVQAM 265
>gi|71027617|ref|XP_763452.1| replication factor C subunit 4 [Theileria parva strain Muguga]
gi|68350405|gb|EAN31169.1| replication factor C subunit 4, putative [Theileria parva]
Length = 324
Score = 210 bits (534), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 114/323 (35%), Positives = 192/323 (59%), Gaps = 3/323 (0%)
Query: 37 DIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVAR 96
D K W+EKYRP +L D+ + +I + + E +P+LLL GPPGTGKT+++L +AR
Sbjct: 2 DTKIDIWIEKYRPTTLDDIIGNPEITTRLQFIAKEGNMPNLLLCGPPGTGKTTSVLCLAR 61
Query: 97 KLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKD 156
+L G + + ++ELNASDDRG+DVVR+ I++FA +S K+V+LDE D+MT+
Sbjct: 62 ELLGTHFKSAVIELNASDDRGVDVVRESIKNFAK-KSLVLPPNKH-KIVILDEVDSMTEP 119
Query: 157 AQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAE 216
AQ ALRR++E Y+ TRFAL CNQ NKII +QSRC R++ L+ + +RL + + E
Sbjct: 120 AQQALRRIMELYSSTTRFALACNQSNKIIEPIQSRCAVIRYSKLQDEQILKRLVTICDME 179
Query: 217 GLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYW 276
L T+ G+ AL+ +GD+R+A+N LQ + +T++ V+ P P I+++
Sbjct: 180 NLTYTDEGMEALLFSADGDLRRAVNNLQIVSAGFKVVTKDNVFKVCDIPSPDLIQKMLEN 239
Query: 277 LLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLS 336
LN ++ + +++ ++ + G + VDI+ + + + P V + + +A +
Sbjct: 240 CLNGNWRQAHEKVDQL-LELGHSPVDILVTMRNVLKTMDAPEHVLLEYIKSVALSHMTMV 298
Query: 337 FGCNDKLQLGSIISTFTQARSAI 359
G + +LQL +++ + A+
Sbjct: 299 NGLSTQLQLEKLLANLCKIALAL 321
>gi|71033715|ref|XP_766499.1| replication factor C subunit 2 [Theileria parva strain Muguga]
gi|68353456|gb|EAN34216.1| replication factor C subunit 2, putative [Theileria parva]
Length = 335
Score = 210 bits (534), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 116/318 (36%), Positives = 186/318 (58%), Gaps = 11/318 (3%)
Query: 39 KASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKL 98
K PWVEKYRP+ ++DV V ++++ +PH++ +GPPGTGKTS LA+AR++
Sbjct: 5 KDVPWVEKYRPKKISDVIFQTQAVSIMEQIVETFNMPHMIFHGPPGTGKTSAALAMARQI 64
Query: 99 YGAQ-YHNMILELNASDDRGIDVVRQQIQDFAS-------TQSFSFGVKASVKLVLLDEA 150
YG + +LELNASD+RGIDVVR +I+ + + V + K+++LDEA
Sbjct: 65 YGLEGMRERVLELNASDERGIDVVRDRIKTYTRINISNNRVNPETNRVMPNYKMIILDEA 124
Query: 151 DAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLK 210
D +T DAQ ALRRVIE Y+ +RF LICN ++KII + SRC+ F F P+E +RLK
Sbjct: 125 DMITADAQAALRRVIENYSSISRFVLICNYLHKIIGPIYSRCSVFHFKPIETNSQVDRLK 184
Query: 211 HVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDI 270
++ EG+ + L L + +GDMRK++ ILQST +ITE A+ +G P PK++
Sbjct: 185 YICNQEGITFDQKALEFLTTVSSGDMRKSITILQSTACLYNEITENAINSVSGKP-PKEV 243
Query: 271 EQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDV-RVRLMNDLA 329
+ + + D + + + + G + I ++++ +V + D+ + ++ +LA
Sbjct: 244 VERIFEVCKNPEGD-VESVCKEVVYDGWDISAIFQQISEYVVECDFIGDIEKSKISLELA 302
Query: 330 DIEYRLSFGCNDKLQLGS 347
+ ++ L G + QL S
Sbjct: 303 NRDFALLQGGSQYFQLAS 320
>gi|242823966|ref|XP_002488166.1| DNA replication factor C subunit Rfc4, putative [Talaromyces
stipitatus ATCC 10500]
gi|218713087|gb|EED12512.1| DNA replication factor C subunit Rfc4, putative [Talaromyces
stipitatus ATCC 10500]
Length = 815
Score = 210 bits (534), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 124/334 (37%), Positives = 187/334 (55%), Gaps = 11/334 (3%)
Query: 25 NGKNVIVSGTPPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPG 84
NG + +G PPD + PWVEKYRP L D+ + + ++ + + + +PH+++ G PG
Sbjct: 13 NGLHASTAGAPPDYEL-PWVEKYRPVYLDDIVGNTETIERLKIIAKDGNMPHVIISGMPG 71
Query: 85 TGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQ-SFSFGVKASVK 143
GKT++IL +AR++ G Y +LELNASD+RGIDVVR +I+ FA + + G K
Sbjct: 72 IGKTTSILCLARQMLGNAYKEAVLELNASDERGIDVVRNRIKGFAQKKVTLPPGRH---K 128
Query: 144 LVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPV 203
LV+LDEAD+MT AQ ALRR +E Y+ TRFA CNQ NKII LQSRC R++ L
Sbjct: 129 LVILDEADSMTPGAQQALRRTMEIYSTTTRFAFACNQSNKIIEPLQSRCAILRYSRLTDG 188
Query: 204 HVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTG 263
V +RL + EAE ++ +E G+AALV GDMR+A+N LQST ++ + V+
Sbjct: 189 QVVKRLSQICEAEKVEFSEDGIAALVFSAEGDMRQAINNLQSTWAGFGFVSGDNVFRVVD 248
Query: 264 NPLPKDIEQI--SYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSD-V 320
+P P ++ + + W E DS I G + DI+ + I+ S+
Sbjct: 249 SPHPIKVQAMIKACW---EGKVDSALDILNELWNLGYSSHDIISTMFRVTKTIQTLSEHA 305
Query: 321 RVRLMNDLADIEYRLSFGCNDKLQLGSIISTFTQ 354
++ + ++ R+ G LQL ++ +
Sbjct: 306 KLEFIKEIGFTHMRILDGVGTLLQLSGCVAKLCK 339
>gi|425773728|gb|EKV12062.1| DNA replication factor C subunit Rfc4, putative [Penicillium
digitatum PHI26]
gi|425782289|gb|EKV20208.1| DNA replication factor C subunit Rfc4, putative [Penicillium
digitatum Pd1]
Length = 352
Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 123/333 (36%), Positives = 185/333 (55%), Gaps = 9/333 (2%)
Query: 25 NGKNVIVSGTPPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPG 84
NG +G P D + PWVEKYRP L D+ + + V+ + + + +PH+++ G PG
Sbjct: 13 NGAKANTAGAPVDYEL-PWVEKYRPTFLDDIVGNTETVERLKIIAKDGNMPHVIISGMPG 71
Query: 85 TGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKL 144
GKT+++L +AR+L G Y +LELNASD+RGIDVVR +I+ FA Q + KL
Sbjct: 72 IGKTTSVLCLARQLLGDAYKEAVLELNASDERGIDVVRNRIKGFA--QKKVTLPQGRHKL 129
Query: 145 VLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVH 204
V+LDEAD+MT AQ ALRR +E Y+ TRFA CNQ NKII LQSRC R+A L
Sbjct: 130 VILDEADSMTAGAQQALRRTMEIYSSTTRFAFACNQSNKIIEPLQSRCAILRYARLTDAQ 189
Query: 205 VTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGN 264
V +RL + EAE ++ +E G+AALV GDMR+A+N LQST ++ + V+ +
Sbjct: 190 VVKRLMQICEAENVEHSEDGIAALVFSAEGDMRQAINNLQSTWSGFGFVSGDNVFRVVDS 249
Query: 265 PLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPS---DVR 321
P P ++ + + + ++E+ G + DI+ TMF +P+ +
Sbjct: 250 PHPVKVQAMIKACWEGKVDVALEGLNEL-WTLGYSSHDIIS--TMFRVTKTIPTLSEHSK 306
Query: 322 VRLMNDLADIEYRLSFGCNDKLQLGSIISTFTQ 354
+ + ++ R+ G LQL ++ +
Sbjct: 307 LEFIREIGFTHMRILDGVQSLLQLSGCVAKLCK 339
>gi|334349834|ref|XP_003342265.1| PREDICTED: LOW QUALITY PROTEIN: replication factor C subunit
2-like, partial [Monodelphis domestica]
Length = 414
Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 112/284 (39%), Positives = 170/284 (59%), Gaps = 3/284 (1%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP L ++ + D V ++ E +P++++ GPPGTGKT++IL +AR L G
Sbjct: 77 PWVEKYRPMKLNEIVGNEDTVSRLEVFAREGNVPNIIISGPPGTGKTTSILCLARALLGP 136
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFAL 161
+ +LELNAS+DRGIDVVR +I+ FA Q + + K+++LDEAD+MT AQ AL
Sbjct: 137 SLKDAVLELNASNDRGIDVVRNKIKMFAQ-QKVTL-PRGRHKIIILDEADSMTDGAQQAL 194
Query: 162 RRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVT 221
RR +E Y+K TRFAL CN +KII +QSRC R+ L V RL +IE E ++ T
Sbjct: 195 RRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQVLARLMTIIEKEKVEYT 254
Query: 222 EGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNES 281
+ GL A+V GDMR+ALN LQSTH I E V+ P P ++++ ++ +
Sbjct: 255 DDGLEAIVFTAXGDMRQALNNLQSTHSGFGFINSENVFKVCDEPHPLLVKEMLQHCVSAN 314
Query: 282 FADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLM 325
+++K ++ + R G + D++ + +MP +++ +
Sbjct: 315 IDEAYKILAHL-WRLGYSPEDVIGNIFRVCKTFQMPEYLKLEFI 357
>gi|409046196|gb|EKM55676.1| hypothetical protein PHACADRAFT_144345 [Phanerochaete carnosa
HHB-10118-sp]
Length = 368
Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 105/233 (45%), Positives = 151/233 (64%), Gaps = 15/233 (6%)
Query: 22 PKDNGKNVIVSGTPPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYG 81
PK+ K+ I D PWVEKYRP+++ DV+A V + R + LPH+L YG
Sbjct: 9 PKEPAKHTI------DPALQPWVEKYRPKTIDDVSAQEHTVAVLRRTLTSTNLPHMLFYG 62
Query: 82 PPGTGKTSTILAVARKLYGA-QYHNMILELNASDDRGIDVVRQQIQDFAS----TQSFSF 136
PPGTGKTSTILA+AR+L+G + + +LELNASD+RGI +VR++I+DFA Q+ S
Sbjct: 63 PPGTGKTSTILALARQLFGPDNFRSRVLELNASDERGISIVREKIKDFARQTPRAQAASS 122
Query: 137 GVKA----SVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRC 192
K K+++LDEAD+MT+DAQ ALRR++E Y + TRF L+CN V +II L SRC
Sbjct: 123 DDKTYPCPPYKIIILDEADSMTQDAQAALRRIMENYVRITRFCLVCNYVTRIIEPLASRC 182
Query: 193 TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQS 245
++FRF PL+ + RL + AE + + + + L+ +GD+R+++ LQS
Sbjct: 183 SKFRFKPLDNASTSARLAAIASAENIHIPDSVIDTLINTSHGDLRRSITYLQS 235
>gi|444320537|ref|XP_004180925.1| hypothetical protein TBLA_0E03520 [Tetrapisispora blattae CBS 6284]
gi|387513968|emb|CCH61406.1| hypothetical protein TBLA_0E03520 [Tetrapisispora blattae CBS 6284]
Length = 324
Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 117/312 (37%), Positives = 179/312 (57%), Gaps = 10/312 (3%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP+ L D+ + + +D + ++ + +PH+++ G PG GKT++I +A +L G
Sbjct: 13 PWVEKYRPKVLKDIVGNNETIDRLQQIALDGNMPHMIISGMPGIGKTTSIHCLAHELLGD 72
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFAL 161
Y +LELNASDDRGI+VVR QI+ FA + K K+++LDEAD+MT AQ AL
Sbjct: 73 SYKQAVLELNASDDRGIEVVRNQIKHFAQKKCHLPPGKN--KIIILDEADSMTSGAQQAL 130
Query: 162 RRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVT 221
RR +E Y+ TRFA CNQ NKII LQSRC R+ L V +RL +IE E + T
Sbjct: 131 RRTMELYSNTTRFAFACNQSNKIIEPLQSRCAILRYNKLSDEEVLKRLLQIIELENVQYT 190
Query: 222 EGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNES 281
GL A++ GDMR+A+N LQST + + V+ +P P ++++ LL++
Sbjct: 191 NDGLEAIIFTAEGDMRQAINNLQSTVAGHTLVNGDNVFKIVDSPHPLIVKKM---LLSKE 247
Query: 282 FADSFKRISEMKMRKGLALVDIVR---EVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFG 338
+S + KG + +DIV V +++IK +R+ ++ ++ R+ G
Sbjct: 248 LDESIDILRNELWDKGYSSIDIVTTCFRVMKILYQIK--ESLRLEIIKEIGFTHMRILEG 305
Query: 339 CNDKLQLGSIIS 350
LQL +++
Sbjct: 306 VGTYLQLACMLA 317
>gi|407851932|gb|EKG05623.1| replication factor C, subunit 2, putative [Trypanosoma cruzi]
Length = 347
Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 120/325 (36%), Positives = 192/325 (59%), Gaps = 16/325 (4%)
Query: 36 PDIKASPWVEKYRPQSLADVAAHRDIVDTID-RLTSENRLPHLLLYGPPGTGKTSTILAV 94
P A+PWVEKYRP +L++V + + V + L S +PH L +GPPGTGKT+ ILAV
Sbjct: 14 PKPNATPWVEKYRPMTLSEVKSQEEAVCALRASLQSSASMPHFLFHGPPGTGKTTAILAV 73
Query: 95 ARKLYGAQY-HNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKAS----------VK 143
AR+L+G Y H+ + E+NASDDRGI V+R++++ FA T + G K K
Sbjct: 74 ARELFGPDYVHSRVREMNASDDRGIQVIREKVKVFAQTAVGNVGHKVQSDGQVYPVPQFK 133
Query: 144 LVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPV 203
L++LDEADA+ DAQ ALRR++E ++ TRF ++CN V++II + SRC ++RF PL
Sbjct: 134 LIILDEADALLPDAQAALRRMMEDFSDVTRFCILCNYVSRIIDPIASRCAKYRFKPLVRE 193
Query: 204 HVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMA-SQQITEEAVYLCT 262
+ +R++ + + E + V++ L AL R+ GD+R A+ LQ A +T+E +
Sbjct: 194 TLYDRIREIAKMEEITVSDASLEALDRVSGGDLRSAIMYLQYAQKAHGSDLTKENFLEVS 253
Query: 263 GNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMP--SDV 320
G+ + +E+ L+++ F D +++ + +G ++ ++ ++ P S V
Sbjct: 254 GSVPMELLEKYLKALVSKEF-DGMYSLTKEIVGQGFPASQLLSQLHQYIIGSSCPLNSLV 312
Query: 321 RVRLMNDLADIEYRLSFGCNDKLQL 345
R R+ L D+E RLS G ++ LQL
Sbjct: 313 RSRIALKLCDVERRLSDGGDEFLQL 337
>gi|121703562|ref|XP_001270045.1| DNA replication factor C subunit Rfc4, putative [Aspergillus
clavatus NRRL 1]
gi|119398189|gb|EAW08619.1| DNA replication factor C subunit Rfc4, putative [Aspergillus
clavatus NRRL 1]
Length = 352
Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 122/329 (37%), Positives = 185/329 (56%), Gaps = 11/329 (3%)
Query: 30 IVSGTPPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTS 89
+ +G P D + PWVEKYRP L D+ + + V+ + + + +PH+++ G PG GKT+
Sbjct: 18 VTAGAPADYEL-PWVEKYRPIFLDDIVGNTETVERLKIIAKDGNMPHVIISGMPGIGKTT 76
Query: 90 TILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQ-SFSFGVKASVKLVLLD 148
++L +AR+L G Y +LELNASD+RGIDVVR +I+ FA + + G K+V+LD
Sbjct: 77 SVLCLARQLLGDAYKEAVLELNASDERGIDVVRNRIKGFAQKKVTLPPGRH---KIVILD 133
Query: 149 EADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTER 208
EAD+MT AQ ALRR +E Y+ TRFA CNQ NKII LQSRC R+A L V +R
Sbjct: 134 EADSMTPGAQQALRRTMEIYSSTTRFAFACNQSNKIIEPLQSRCAILRYARLTDAQVVQR 193
Query: 209 LKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPK 268
LK + +AE ++ TE G+AALV GDMR+A+N LQST + + V+ +P P
Sbjct: 194 LKQICDAEKVEHTEDGIAALVFSAEGDMRQAINNLQSTWSGFGLVNGDNVFRVVDSPHPI 253
Query: 269 DIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPS---DVRVRLM 325
++ + + + ++E+ G + DI+ TMF +P+ ++ +
Sbjct: 254 KVQAMIKACWEGKIDAALETLNEL-WNLGYSSHDIIS--TMFRVTKTIPTLSEHSKLEFI 310
Query: 326 NDLADIEYRLSFGCNDKLQLGSIISTFTQ 354
++ R+ G LQL +S +
Sbjct: 311 REIGFTHMRILDGVQSLLQLSGCVSKLCK 339
>gi|257076223|ref|ZP_05570584.1| replication factor C small subunit [Ferroplasma acidarmanus fer1]
Length = 318
Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 107/318 (33%), Positives = 185/318 (58%), Gaps = 6/318 (1%)
Query: 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 102
W EKYRP L+DV + ++ ++ + +PHL+ GP GTGKTST +A+A L+G
Sbjct: 5 WTEKYRPSKLSDVIGEKGNINRLNAYVKDKNIPHLIFAGPQGTGKTSTAIALAISLFGDS 64
Query: 103 YHNMILELNASDDRGIDVVRQQIQDFASTQ-SFSFGVKASVKLVLLDEADAMTKDAQFAL 161
+ +ELNAS+DRGID++R I++FA + S G K ++ LDEAD +T DAQ AL
Sbjct: 65 WKENFMELNASNDRGIDIIRDNIKNFAKIRPSNDLGFK----IIFLDEADHLTGDAQAAL 120
Query: 162 RRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVT 221
RR +E + TRF CN +KIIP +QSRC RF P++ + RLK + + E ++
Sbjct: 121 RRTMEMFYNTTRFIFSCNYSSKIIPPIQSRCVVLRFKPIDRESMKNRLKDIAKKENFEID 180
Query: 222 EGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNES 281
+ L A+ + +GDMRKA+N+LQ+ + S +++ A+Y +G + + + + +
Sbjct: 181 DDSLDAIYEISDGDMRKAVNVLQAVKL-SGKVSATAIYEISGEINRDEYKNLINMAIEGN 239
Query: 282 FADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCND 341
F D+ + +M + GL+ +DI++ + + ++ ++ ++ LA+ E+R+ G D
Sbjct: 240 FNDARNYLDKMLIDYGLSGIDIIKGMHSSIRGEQIAYKQKLEIIMALAEAEFRIVEGGTD 299
Query: 342 KLQLGSIISTFTQARSAI 359
+Q+ ++++ + S I
Sbjct: 300 NIQMDALLAKLSYIGSEI 317
>gi|297612760|ref|NP_001066296.2| Os12g0176500 [Oryza sativa Japonica Group]
gi|10798806|dbj|BAB16441.1| replication factor C 37 kDa subunit [Oryza sativa Japonica Group]
gi|77553810|gb|ABA96606.1| Activator 1 37 kDa subunit, putative, expressed [Oryza sativa
Japonica Group]
gi|125535960|gb|EAY82448.1| hypothetical protein OsI_37665 [Oryza sativa Indica Group]
gi|125578677|gb|EAZ19823.1| hypothetical protein OsJ_35406 [Oryza sativa Japonica Group]
gi|215737297|dbj|BAG96226.1| unnamed protein product [Oryza sativa Japonica Group]
gi|255670097|dbj|BAF29315.2| Os12g0176500 [Oryza sativa Japonica Group]
Length = 339
Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 104/211 (49%), Positives = 141/211 (66%), Gaps = 5/211 (2%)
Query: 40 ASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLY 99
+ PWVEKYRP+ + DVA ++V + LPH+L YGPPGTGKT+T LA+A +LY
Sbjct: 8 SQPWVEKYRPRQVKDVAHQEEVVRVLTTTLQTADLPHMLFYGPPGTGKTTTALAIAYQLY 67
Query: 100 GAQ-YHNMILELNASDDRGIDVVRQQIQDFASTQSFSF---GVKAS-VKLVLLDEADAMT 154
G + Y + +LELNASDDRGI+VVR +I+DFA+ S G K+++LDEAD+MT
Sbjct: 68 GPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSARKGGYPCPPYKIIILDEADSMT 127
Query: 155 KDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIE 214
+DAQ ALRR +E Y+K TRF ICN +++II L SRC +FRF PL ++ R+ H+
Sbjct: 128 EDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSNRILHICN 187
Query: 215 AEGLDVTEGGLAALVRLCNGDMRKALNILQS 245
EGL + LA L + NGD+R+A+ LQS
Sbjct: 188 EEGLSLDAQALATLSTISNGDLRRAITYLQS 218
>gi|46125645|ref|XP_387376.1| hypothetical protein FG07200.1 [Gibberella zeae PH-1]
Length = 354
Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 122/315 (38%), Positives = 181/315 (57%), Gaps = 16/315 (5%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP L DV + + V+ + + E +PH+++ G PG GKT+++L +AR+L G
Sbjct: 34 PWVEKYRPVFLDDVVGNTETVERLKIIAREGNMPHVIISGMPGIGKTTSVLCLARQLLGD 93
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQ-SFSFGVKASVKLVLLDEADAMTKDAQFA 160
Y +LELNASD+RGIDVVR +I+ FA + + G KLV+LDEAD+MT AQ A
Sbjct: 94 SYKEAVLELNASDERGIDVVRNRIKGFAQKKVTLPVGRH---KLVILDEADSMTSGAQQA 150
Query: 161 LRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDV 220
LRR +E Y+ TRFA CNQ NKII LQSRC R+A L V +RL +IEAE ++
Sbjct: 151 LRRTMEIYSNTTRFAFACNQSNKIIEPLQSRCAILRYAKLTDAQVLKRLMQIIEAEKVEF 210
Query: 221 TEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQI---SYWL 277
++ GLAALV GDMR+A+N LQST ++ + V+ +P P ++ + Y
Sbjct: 211 SDDGLAALVFSAEGDMRQAINNLQSTFAGFGFVSGDNVFKVVDSPHPIKVQAMLKACYEG 270
Query: 278 LNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPS---DVRVRLMNDLADIEYR 334
+S D+ + + ++ G + DI+ TMF +P+ ++ + ++ +
Sbjct: 271 KVDSALDTLRELWDL----GYSSHDIIS--TMFKVTKTIPTLSEHSKLEFIKEIGFTHMK 324
Query: 335 LSFGCNDKLQLGSII 349
+ G LQL +
Sbjct: 325 VLEGVQTLLQLSGCV 339
>gi|392595637|gb|EIW84960.1| P-loop containing nucleoside triphosphate hydrolase protein
[Coniophora puteana RWD-64-598 SS2]
Length = 369
Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 100/213 (46%), Positives = 144/213 (67%), Gaps = 9/213 (4%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP+++ +V+A V + + LPH+L YGPPGTGKTSTILA+AR+L+G
Sbjct: 21 PWVEKYRPKTIDEVSAQEHAVAVLRKTLFSTNLPHMLFYGPPGTGKTSTILALARQLFGP 80
Query: 102 -QYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKAS--------VKLVLLDEADA 152
+ N +LELNASDDRGI +VR++I++FA + V + K+++LDEAD+
Sbjct: 81 DNFRNRVLELNASDDRGISIVREKIKNFARQTPRAQAVASDGKTYPCPPYKIIILDEADS 140
Query: 153 MTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHV 212
MT+DAQ ALRR++E Y + TRF L+CN V +II L SRC++FRF PL+ + RL H+
Sbjct: 141 MTQDAQGALRRIMETYARITRFCLVCNYVTRIIEPLASRCSKFRFTPLDSSSTSNRLSHI 200
Query: 213 IEAEGLDVTEGGLAALVRLCNGDMRKALNILQS 245
E +DV+ + AL+ +GD+R+++ LQS
Sbjct: 201 AAQEHVDVSPEVIQALIDTSSGDLRRSITYLQS 233
>gi|408397489|gb|EKJ76631.1| hypothetical protein FPSE_03181 [Fusarium pseudograminearum CS3096]
Length = 354
Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 122/315 (38%), Positives = 181/315 (57%), Gaps = 16/315 (5%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP L DV + + V+ + + E +PH+++ G PG GKT+++L +AR+L G
Sbjct: 34 PWVEKYRPVFLDDVVGNTETVERLKIIAREGNMPHVIISGMPGIGKTTSVLCLARQLLGD 93
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQ-SFSFGVKASVKLVLLDEADAMTKDAQFA 160
Y +LELNASD+RGIDVVR +I+ FA + + G KLV+LDEAD+MT AQ A
Sbjct: 94 SYKEAVLELNASDERGIDVVRNRIKGFAQKKVTLPVGRH---KLVILDEADSMTSGAQQA 150
Query: 161 LRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDV 220
LRR +E Y+ TRFA CNQ NKII LQSRC R+A L V +RL +IEAE ++
Sbjct: 151 LRRTMEIYSNTTRFAFACNQSNKIIEPLQSRCAILRYAKLTDAQVLKRLMQIIEAEKVEF 210
Query: 221 TEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQI---SYWL 277
++ GLAALV GDMR+A+N LQST ++ + V+ +P P ++ + Y
Sbjct: 211 SDDGLAALVFSAEGDMRQAINNLQSTFAGFGFVSGDNVFKVVDSPHPIKVQAMLKACYEG 270
Query: 278 LNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPS---DVRVRLMNDLADIEYR 334
+S D+ + + ++ G + DI+ TMF +P+ ++ + ++ +
Sbjct: 271 KVDSALDTLRELWDL----GYSSHDIIS--TMFKVTKTIPTLSEHSKLEFIKEIGFTHMK 324
Query: 335 LSFGCNDKLQLGSII 349
+ G LQL +
Sbjct: 325 VLEGVQTLLQLSGCV 339
>gi|340522843|gb|EGR53076.1| replication factor C subunit 4 [Trichoderma reesei QM6a]
Length = 357
Score = 209 bits (532), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 122/316 (38%), Positives = 182/316 (57%), Gaps = 16/316 (5%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP L DV + + ++ + + E +PH+++ G PG GKT+++L +AR+L G
Sbjct: 34 PWVEKYRPVFLDDVVGNTETIERLKIIAKEGNMPHVIISGMPGIGKTTSVLCLARQLLGE 93
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQ-SFSFGVKASVKLVLLDEADAMTKDAQFA 160
Y +LELNASD+RGIDVVR +I+ FA + + G KLV+LDEAD+MT AQ A
Sbjct: 94 SYKEAVLELNASDERGIDVVRNRIKGFAQKKVTLPPGRH---KLVILDEADSMTSGAQQA 150
Query: 161 LRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDV 220
LRR +E Y+ TRFA CNQ NKII LQSRC R+A L V +RL +IEAE ++
Sbjct: 151 LRRTMEIYSNTTRFAFACNQSNKIIEPLQSRCAILRYAKLTDEQVVKRLLQIIEAEKVEY 210
Query: 221 TEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQI---SYWL 277
++ GLAALV GDMR+A+N LQST ++ + V+ +P P ++ + Y
Sbjct: 211 SDDGLAALVFSAEGDMRQAINNLQSTWAGFGFVSGDNVFKVVDSPHPIKVQAMLKACYEG 270
Query: 278 LNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPS---DVRVRLMNDLADIEYR 334
+S D+ + + ++ G + DI+ TMF MP+ ++ + ++ +
Sbjct: 271 NVDSALDTLRELWDL----GYSSHDIIS--TMFKVTKTMPTLSEHSKLEFIKEIGFTHMK 324
Query: 335 LSFGCNDKLQLGSIIS 350
+ G LQL ++
Sbjct: 325 ILEGVQTLLQLSGCVA 340
>gi|392575134|gb|EIW68268.1| hypothetical protein TREMEDRAFT_44679 [Tremella mesenterica DSM
1558]
Length = 346
Score = 209 bits (532), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 117/319 (36%), Positives = 183/319 (57%), Gaps = 14/319 (4%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP L D+ + D V+ + + + +PH+++ G PG GKT++I +A L G
Sbjct: 26 PWVEKYRPVLLDDIVGNTDTVERLKVIAEDGNVPHIIISGMPGIGKTTSIHCLAHALLGE 85
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQ-SFSFGVKASVKLVLLDEADAMTKDAQFA 160
Y +LELNASD+RGIDVVR +I+ FA + + G K+++LDEAD+MT AQ A
Sbjct: 86 SYKEGVLELNASDERGIDVVRNKIKSFAQRKVTLPPGRH---KIIILDEADSMTAGAQQA 142
Query: 161 LRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDV 220
LRR +E Y+ TRFAL CN NKII +QSRC R++ L+ V +RLK + E E +
Sbjct: 143 LRRTMEIYSNTTRFALACNMSNKIIEPIQSRCAILRYSKLKDAEVLKRLKELCEMEDVKH 202
Query: 221 TEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNE 280
+ GL+AL+ GDMR+A+N LQSTH ++++ V+ P P + +
Sbjct: 203 NDAGLSALIFTAEGDMRQAINNLQSTHSGFGFVSQDNVFKICDQPHPIVVRHMIKACQKG 262
Query: 281 SFADSFKRISEMKMRKGLALVDIVREVTMFVFKI-----KMPSDVRVRLMNDLADIEYRL 335
D+ RI+E+ +G + VDIV VF++ ++P +++ + ++ R+
Sbjct: 263 EIDDALARINEL-WDQGYSAVDIV----TTVFRVTKGMEELPEVLKLDYIREIGWTHMRI 317
Query: 336 SFGCNDKLQLGSIISTFTQ 354
G +QLG++++ +
Sbjct: 318 LEGVGTLVQLGAMVARLCR 336
>gi|357160682|ref|XP_003578842.1| PREDICTED: replication factor C subunit 4-like [Brachypodium
distachyon]
Length = 339
Score = 209 bits (532), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 120/317 (37%), Positives = 181/317 (57%), Gaps = 16/317 (5%)
Query: 40 ASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLY 99
+ PWVEKYRP+ + DVA ++V + LPH+L YGPPGTGKT+T LA+A +LY
Sbjct: 8 SQPWVEKYRPRQVKDVAHQEEVVRVLTNTLQTADLPHMLFYGPPGTGKTTTALAIAYQLY 67
Query: 100 GAQ-YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASV-----KLVLLDEADAM 153
G + Y + +LELNASD+RGI+VVR +I+DFA+ + K K+++LDEAD+M
Sbjct: 68 GPELYKSRVLELNASDERGINVVRTKIKDFAAV-AVGTARKGGYPCPPYKIIILDEADSM 126
Query: 154 TKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVI 213
T+DAQ ALRR +E Y+K TRF ICN +++II L SRC +FRF PL +T R+ H+
Sbjct: 127 TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEDVMTNRILHIC 186
Query: 214 EAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQI 273
EGL + L+ L +C GD+R+A+ LQS + +P+DI +
Sbjct: 187 HEEGLTLDAQALSTLSAICQGDLRRAITYLQSAARLFGSSISSTDLISVSGAIPEDIVK- 245
Query: 274 SYWLLNESFADSF----KRISEMKMRKGLALVDIVRE-VTMFVFKIKMPSDVRVRLMNDL 328
LL + F K +S + + G + ++ + + + V +P + + R+ L
Sbjct: 246 --SLLGACKSGEFDVANKEVSSI-IADGYPVSQLLSQFLDVIVNADDIPDEQKARICKKL 302
Query: 329 ADIEYRLSFGCNDKLQL 345
+ + L G ++ LQL
Sbjct: 303 GEADKCLVDGADEYLQL 319
>gi|348582722|ref|XP_003477125.1| PREDICTED: replication factor C subunit 4-like [Cavia porcellus]
Length = 363
Score = 209 bits (532), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 129/331 (38%), Positives = 195/331 (58%), Gaps = 9/331 (2%)
Query: 32 SGTPPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTI 91
SG K PWVEKYRP+ + +VA ++V + + LP+LL YGPPGTGKTSTI
Sbjct: 28 SGENKKAKPIPWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTI 87
Query: 92 LAVARKLYGAQ-YHNMILELNASDDRGIDVVRQQIQDFAS---TQSFSFGVKAS-VKLVL 146
LA AR+L+G + + +LELNASD+RGI VVR+++++FA + S S G K+V+
Sbjct: 88 LAAARELFGPDLFRSRVLELNASDERGIQVVREKVKNFAQLAVSGSRSDGKPCPPFKIVI 147
Query: 147 LDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVT 206
LDEAD+MT AQ ALRR +EK +K TRF LICN V++II L SRC++FRF PL
Sbjct: 148 LDEADSMTSAAQAALRRTMEKESKATRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQ 207
Query: 207 ERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTH--MASQQITEEAVYLCTGN 264
+RL + E E + ++ G+ LV++ GD+RKA+ LQS +++ E+ + G
Sbjct: 208 QRLLDIAEKENVKISNEGIEYLVKVSEGDLRKAITFLQSATRLTGGKEVMEKVITDIAGV 267
Query: 265 PLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRL 324
+ I I + SF D + + + +G A +V ++ V + SD + +
Sbjct: 268 IPAETIGGIFAACKSGSF-DKLEAAVKDLINEGHAATQLVSQLHDAVVENDNLSDKQKSI 326
Query: 325 MND-LADIEYRLSFGCNDKLQLGSIISTFTQ 354
+ + LA+++ L+ G ++ LQL S+ +T Q
Sbjct: 327 ITEKLAEVDKCLTDGADEYLQLISLCATLMQ 357
>gi|322701219|gb|EFY92969.1| putative replication factor C [Metarhizium acridum CQMa 102]
Length = 357
Score = 209 bits (532), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 121/320 (37%), Positives = 184/320 (57%), Gaps = 16/320 (5%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP L DV + + ++ + + E +PH+++ G PG GKT+++L +AR+L G
Sbjct: 34 PWVEKYRPVFLDDVVGNTETIERLKIIAREGNMPHVIISGMPGIGKTTSVLCLARQLLGE 93
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQ-SFSFGVKASVKLVLLDEADAMTKDAQFA 160
Y +LELNASD+RGIDVVR +I+ FA + + G KLV+LDEAD+MT AQ A
Sbjct: 94 SYREAVLELNASDERGIDVVRNRIKGFAQKKVTLPPGRH---KLVILDEADSMTSGAQQA 150
Query: 161 LRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDV 220
LRR +E Y+ TRFA CNQ NKII LQSRC R+A L V +RL +IEAE ++
Sbjct: 151 LRRTMEIYSNTTRFAFACNQSNKIIEPLQSRCAILRYAKLSDAQVVKRLLQIIEAEKVEY 210
Query: 221 TEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQI---SYWL 277
++ GLAALV GDMR+A+N LQST ++ + V+ +P P ++ + Y
Sbjct: 211 SDDGLAALVFSAEGDMRQAINNLQSTFAGFGFVSGDNVFKVVDSPHPIKVQAMLKACYEG 270
Query: 278 LNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPS---DVRVRLMNDLADIEYR 334
+S D+ + + ++ G + DI+ TMF +P+ ++ + ++ +
Sbjct: 271 NVDSALDTLRELWDL----GYSSHDIIS--TMFKVTKTIPTLSEHSKLEFIKEIGFTHMK 324
Query: 335 LSFGCNDKLQLGSIISTFTQ 354
+ G LQL ++ ++
Sbjct: 325 ILEGVQTLLQLSGCVARLSK 344
>gi|320032378|gb|EFW14331.1| DNA replication factor C subunit Rfc2 [Coccidioides posadasii str.
Silveira]
Length = 393
Score = 209 bits (532), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 104/218 (47%), Positives = 145/218 (66%), Gaps = 11/218 (5%)
Query: 39 KASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKL 98
K PWVEKYRP++L DVAA V + R + LPH+L YGPPGTGKTSTILA+A+ L
Sbjct: 34 KLQPWVEKYRPKTLDDVAAQDHTVTVLQRTLQASNLPHMLFYGPPGTGKTSTILALAKSL 93
Query: 99 YGAQ-YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKAS----------VKLVLL 147
+G + Y + ILELNASD+RGI++VR++I+DFA Q S K+++L
Sbjct: 94 FGPKLYRSRILELNASDERGINIVREKIKDFARIQLSHPPAHDSEYRKQYPCPPFKIIIL 153
Query: 148 DEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTE 207
DEAD+MT+DAQ ALRR +E++++ TRF L+CN V +II L SRC++FRF L+
Sbjct: 154 DEADSMTQDAQSALRRTMERFSRITRFCLVCNYVTRIIDPLASRCSKFRFKSLDGSAAGT 213
Query: 208 RLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQS 245
RL+ + + E L + G + AL+R GD+R+A+ +QS
Sbjct: 214 RLEEIAKTEKLRLDNGVVDALIRCSEGDLRRAITYMQS 251
>gi|119177342|ref|XP_001240460.1| hypothetical protein CIMG_07623 [Coccidioides immitis RS]
gi|303316031|ref|XP_003068020.1| Activator 1 41 kDa subunit , putative [Coccidioides posadasii C735
delta SOWgp]
gi|240107696|gb|EER25875.1| Activator 1 41 kDa subunit , putative [Coccidioides posadasii C735
delta SOWgp]
Length = 393
Score = 209 bits (532), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 104/218 (47%), Positives = 145/218 (66%), Gaps = 11/218 (5%)
Query: 39 KASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKL 98
K PWVEKYRP++L DVAA V + R + LPH+L YGPPGTGKTSTILA+A+ L
Sbjct: 34 KLQPWVEKYRPKTLDDVAAQDHTVTVLQRTLQASNLPHMLFYGPPGTGKTSTILALAKSL 93
Query: 99 YGAQ-YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKAS----------VKLVLL 147
+G + Y + ILELNASD+RGI++VR++I+DFA Q S K+++L
Sbjct: 94 FGPKLYRSRILELNASDERGINIVREKIKDFARIQLSHPPAHDSEYRKQYPCPPFKIIIL 153
Query: 148 DEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTE 207
DEAD+MT+DAQ ALRR +E++++ TRF L+CN V +II L SRC++FRF L+
Sbjct: 154 DEADSMTQDAQSALRRTMERFSRITRFCLVCNYVTRIIDPLASRCSKFRFKSLDGSAAGT 213
Query: 208 RLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQS 245
RL+ + + E L + G + AL+R GD+R+A+ +QS
Sbjct: 214 RLEEIAKTEKLRLDNGVVDALIRCSEGDLRRAITYMQS 251
>gi|322703485|gb|EFY95093.1| putative replication factor C [Metarhizium anisopliae ARSEF 23]
Length = 357
Score = 209 bits (532), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 121/320 (37%), Positives = 183/320 (57%), Gaps = 16/320 (5%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP L DV + + ++ + + E +PH+++ G PG GKT+++L +AR+L G
Sbjct: 34 PWVEKYRPVFLDDVVGNTETIERLKIIAREGNMPHVIISGMPGIGKTTSVLCLARQLLGE 93
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQ-SFSFGVKASVKLVLLDEADAMTKDAQFA 160
Y +LELNASD+RGIDVVR +I+ FA + + G KLV+LDEAD+MT AQ A
Sbjct: 94 SYKEAVLELNASDERGIDVVRNRIKGFAQKKVTLPPGRH---KLVILDEADSMTSGAQQA 150
Query: 161 LRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDV 220
LRR +E Y+ TRFA CNQ NKII LQSRC R+A L V +RL +IEAE ++
Sbjct: 151 LRRTMEIYSNTTRFAFACNQSNKIIEPLQSRCAILRYAKLSDAQVVKRLMQIIEAEKVEY 210
Query: 221 TEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQI---SYWL 277
++ GLAALV GDMR+A+N LQST ++ + V+ +P P ++ + Y
Sbjct: 211 SDDGLAALVFSAEGDMRQAINNLQSTFAGFGFVSGDNVFKVVDSPHPIKVQAMLKACYEG 270
Query: 278 LNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPS---DVRVRLMNDLADIEYR 334
+S D+ + + + G + DI+ TMF +P+ ++ + ++ +
Sbjct: 271 NVDSALDTLRELWNL----GYSSHDIIS--TMFKVTKTIPTLSEHSKLEFIKEIGFTHMK 324
Query: 335 LSFGCNDKLQLGSIISTFTQ 354
+ G LQL ++ ++
Sbjct: 325 ILEGVQTLLQLSGCVARLSK 344
>gi|302909278|ref|XP_003050037.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256730974|gb|EEU44324.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 354
Score = 209 bits (532), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 121/316 (38%), Positives = 182/316 (57%), Gaps = 16/316 (5%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP L DV + + ++ + + E +PH+++ G PG GKT+++L +AR+L G
Sbjct: 34 PWVEKYRPIFLDDVVGNTETIERLKIIAKEGNMPHVIISGMPGIGKTTSVLCLARQLLGE 93
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQ-SFSFGVKASVKLVLLDEADAMTKDAQFA 160
Y +LELNASD+RGIDVVR +I+ FA + + G KLV+LDEAD+MT AQ A
Sbjct: 94 SYKEAVLELNASDERGIDVVRNRIKGFAQKKVTLPAGRH---KLVILDEADSMTSGAQQA 150
Query: 161 LRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDV 220
LRR +E Y+ TRFA CNQ NKII LQSRC R+A L V +RL +IEAE ++
Sbjct: 151 LRRTMEIYSNTTRFAFACNQSNKIIEPLQSRCAILRYAKLTDAQVVKRLMQIIEAEKVEY 210
Query: 221 TEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQI---SYWL 277
++ GLAALV GDMR+A+N LQST ++ + V+ +P P ++ + Y
Sbjct: 211 SDDGLAALVFSAEGDMRQAINNLQSTFAGFGFVSGDNVFKVVDSPHPIKVQAMLKACYEG 270
Query: 278 LNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPS---DVRVRLMNDLADIEYR 334
+S D+ + + ++ G + DI+ TMF +P+ ++ + ++ +
Sbjct: 271 NVDSALDTLRELWDL----GYSSHDIIS--TMFRVTKTIPTLSEHSKLEFIKEIGFTHMK 324
Query: 335 LSFGCNDKLQLGSIIS 350
+ G LQL ++
Sbjct: 325 VLEGVQTLLQLSGCVA 340
>gi|365981921|ref|XP_003667794.1| hypothetical protein NDAI_0A03940 [Naumovozyma dairenensis CBS 421]
gi|343766560|emb|CCD22551.1| hypothetical protein NDAI_0A03940 [Naumovozyma dairenensis CBS 421]
Length = 354
Score = 209 bits (532), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 115/331 (34%), Positives = 197/331 (59%), Gaps = 17/331 (5%)
Query: 39 KASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKL 98
++ PWVEKYRP+ L D+ A V + + LPH+L YGPPGTGKTSTILA+A++L
Sbjct: 25 QSKPWVEKYRPKQLDDITAQGHAVSVLKKTLQSANLPHMLFYGPPGTGKTSTILALAKEL 84
Query: 99 YGAQY-HNMILELNASDDRGIDVVRQQIQDFA-------STQSFSFGVKASVKLVLLDEA 150
YG + + ILELNASD+RGI +VR+++++FA S K+++LDEA
Sbjct: 85 YGPELMKSRILELNASDERGISIVREKVKNFARLTVSKPSKNDLENYPCPPYKIIILDEA 144
Query: 151 DAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLK 210
D+MT DAQ ALRR +E Y+ TRF LICN V +II L SRC++FRF PL+ + RL+
Sbjct: 145 DSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASRCSKFRFKPLDATNSIGRLE 204
Query: 211 HVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQST-----HMASQQITEEAVYLCTGNP 265
+V E + + + ++ + GD+R+A+ +LQS + +Q+T +V G
Sbjct: 205 YVAREESVQYDDDVMKCILDISEGDLRRAITLLQSASKRILYTGEKQVTSASVKELAG-V 263
Query: 266 LPKDIEQISYWLLNES-FADSFKRISEMKMRKGLALVDIVREV-TMFVFKIKMPSDVRVR 323
+P D+ Q+ ++++ ++ + ++E ++ G + ++ ++ ++ + SD + +
Sbjct: 264 IPDDVFQVVIDKVSKNDVNETIEYVNEF-IKSGWSAASVINQLHDYYITNDEFNSDFKNK 322
Query: 324 LMNDLADIEYRLSFGCNDKLQLGSIISTFTQ 354
+ L +++ +L+ G N+ +QL +++ +Q
Sbjct: 323 VSLILFEMDSKLANGTNEHIQLLNLLVKISQ 353
>gi|156083805|ref|XP_001609386.1| replication factor C subunit 4 [Babesia bovis T2Bo]
gi|154796637|gb|EDO05818.1| replication factor C subunit 4 [Babesia bovis]
Length = 306
Score = 209 bits (532), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 114/303 (37%), Positives = 175/303 (57%), Gaps = 3/303 (0%)
Query: 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 102
W+EKYRP L DV + ++ ++ + E +P+LLL GPPGTGKT++IL +A ++ G
Sbjct: 6 WIEKYRPGILKDVIGNPEVTRRLEVIAREGNMPNLLLCGPPGTGKTTSILCLAHEMLGNH 65
Query: 103 YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALR 162
+ N +LELNASDDRG+DVVR I++FA K K+++LDE D+MT+ AQ ALR
Sbjct: 66 FKNAVLELNASDDRGVDVVRGAIKNFAKKSVVLPPNKH--KIIILDEVDSMTEAAQQALR 123
Query: 163 RVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTE 222
R++E Y+K TRFAL CNQ KII +QSRC R+ PL+ + RL H+ + E + T
Sbjct: 124 RIMEIYSKTTRFALACNQSTKIIEPIQSRCAVIRYEPLQDEMILTRLIHICKEENVQYTN 183
Query: 223 GGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESF 282
G+ AL+ NGDMR+A+N LQ+ IT + VY P P+ I ++ L+ +
Sbjct: 184 DGMEALLFTANGDMRRAVNNLQNVSSGYNLITSQNVYKVCDVPSPELIRKLLQDCLDGQW 243
Query: 283 ADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDK 342
+ ++ ++ + G + DI+ V + +K P + + ++ + G +
Sbjct: 244 RPAHEKAEDL-LALGHSPFDILMTVRSVLKTLKAPEHILCEFLKTISLSHMTMISGLSSP 302
Query: 343 LQL 345
LQL
Sbjct: 303 LQL 305
>gi|388505532|gb|AFK40832.1| unknown [Lotus japonicus]
Length = 342
Score = 209 bits (532), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 122/329 (37%), Positives = 193/329 (58%), Gaps = 10/329 (3%)
Query: 36 PDIKAS-PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAV 94
P +++S PWVEKYRP+ + DVA ++V + PH+L YGPPGTGKT+T LA+
Sbjct: 3 PIVQSSQPWVEKYRPKQVKDVAYQDEVVRVLTNTLETGSCPHMLFYGPPGTGKTTTALAI 62
Query: 95 ARKLYGAQ-YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASV-----KLVLLD 148
A +L+G + Y + +LELNASDDRGI+VVR +I+DFA+ + K K+++LD
Sbjct: 63 AHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGTNPKKGGYPCPPYKIIVLD 122
Query: 149 EADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTER 208
EAD+MT+DAQ ALRR +E Y+K TRF ICN +++II L SRC +FRF PL ++ R
Sbjct: 123 EADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEIMSSR 182
Query: 209 LKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQST-HMASQQITEEAVYLCTGNPLP 267
+ ++ EGL + GL+ L + GD+R+A+ LQS+ + I+ + + +G
Sbjct: 183 ILYICNEEGLHLDAEGLSTLSSISQGDLRRAITYLQSSARLFGSHISSKDLISVSGVVPE 242
Query: 268 KDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDV-RVRLMN 326
+E I + +F + K ++ + +G ++ ++ + + K SD + R+
Sbjct: 243 NVVEAILKACKSGNFDLANKEVNNF-IAEGYPASQLLTQLFDAIVEEKGTSDKQKARICK 301
Query: 327 DLADIEYRLSFGCNDKLQLGSIISTFTQA 355
L + + L G ++ LQL +IS T+A
Sbjct: 302 KLGEADKCLVDGADEYLQLLDVISNTTKA 330
>gi|254564511|ref|XP_002489366.1| replication factor C subunit [Komagataella pastoris GS115]
gi|238029162|emb|CAY67082.1| Subunit of heteropentameric Replication factor C (RF-C)
[Komagataella pastoris GS115]
gi|328349795|emb|CCA36195.1| replication factor C subunit 2/4 [Komagataella pastoris CBS 7435]
Length = 324
Score = 209 bits (532), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 118/315 (37%), Positives = 181/315 (57%), Gaps = 7/315 (2%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP+ L D+ + D ++ + + +PH+++ G PG GKT+++ +A +L G
Sbjct: 10 PWVEKYRPKLLKDIVGNEDTIERLKAFAIDGNVPHMIISGLPGIGKTTSVHCLAHELLGD 69
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQ-SFSFGVKASVKLVLLDEADAMTKDAQFA 160
Y++ +LELNASDDRGI+VVR +I+ FA + S G K+V+LDEAD+MT AQ A
Sbjct: 70 MYYDAVLELNASDDRGIEVVRNKIKQFAHKKVSLPPGRH---KIVILDEADSMTPGAQQA 126
Query: 161 LRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDV 220
LRR +E Y+ TRF CN NKII LQSRC+ R++ L V RL ++ + EG+
Sbjct: 127 LRRTMEIYSGTTRFVFACNMSNKIIEPLQSRCSILRYSKLYDEQVLSRLLYICKEEGVKY 186
Query: 221 TEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNE 280
T+ GL AL+ GDMR+A+N LQST + + V+ +P P + Q+ + + +
Sbjct: 187 TDDGLEALIFTAEGDMRQAINNLQSTVAGMGLVNGDNVFRIVDSPHPLVVRQMLFKAVKD 246
Query: 281 SFADSFKRISEMKMRKGLALVDIVREVTMFVFK--IKMPSDVRVRLMNDLADIEYRLSFG 338
S D+ + KG + VDIV + V K ++P R+ +M ++ R+ G
Sbjct: 247 SDIDAAVDLLNRLWEKGYSAVDIV-STSFKVMKSVTEIPEADRLEVMREIGFTHMRVLEG 305
Query: 339 CNDKLQLGSIISTFT 353
+ LQL +++ T
Sbjct: 306 VSSYLQLAGMLARIT 320
>gi|402861875|ref|XP_003895301.1| PREDICTED: replication factor C subunit 4, partial [Papio anubis]
Length = 298
Score = 209 bits (531), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 114/251 (45%), Positives = 159/251 (63%), Gaps = 9/251 (3%)
Query: 17 NQNLKPKDNGKNVIV--SGTPPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRL 74
++L KD G SG K PWVEKYRP+ + +VA ++V + + L
Sbjct: 12 TKSLLTKDRGVAATAGSSGENKKAKPVPWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADL 71
Query: 75 PHLLLYGPPGTGKTSTILAVARKLYGAQYHNM-ILELNASDDRGIDVVRQQIQDFAS--- 130
P+LL YGPPGTGKTSTILA AR+L+G + + +LELNASD+RGI VVR+++++FA
Sbjct: 72 PNLLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTV 131
Query: 131 TQSFSFGVKAS-VKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQ 189
+ S S G K+V+LDEAD+MT AQ ALRR +EK +K TRF LICN V++II L
Sbjct: 132 SGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLT 191
Query: 190 SRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTH-- 247
SRC++FRF PL +RL + E E + +++ G+A LV++ GD+RKA+ LQS
Sbjct: 192 SRCSKFRFKPLSDKIQQQRLLDIAEKENVKISDEGIAYLVKVSEGDLRKAITFLQSATRL 251
Query: 248 MASQQITEEAV 258
++ITE +
Sbjct: 252 TGGKEITERVI 262
>gi|407416746|gb|EKF37786.1| replication factor C, subunit 2, putative [Trypanosoma cruzi
marinkellei]
Length = 445
Score = 209 bits (531), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 120/325 (36%), Positives = 190/325 (58%), Gaps = 16/325 (4%)
Query: 36 PDIKASPWVEKYRPQSLADVAAHRDIVDTID-RLTSENRLPHLLLYGPPGTGKTSTILAV 94
P A+PWVEKYRP +L +V + + V + L S +PH L +GPPGTGKT+ ILAV
Sbjct: 112 PKPNATPWVEKYRPMTLNEVKSQEEAVSALRASLQSSASMPHFLFHGPPGTGKTTAILAV 171
Query: 95 ARKLYGAQY-HNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKAS----------VK 143
AR+L+G Y H+ + E+NASDDRGI V+R++++ FA T + G K K
Sbjct: 172 ARELFGPDYVHSRVREMNASDDRGIQVIREKVKVFAQTAVGNVGHKVQSDGQVYPVPQFK 231
Query: 144 LVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPV 203
L++LDEADA+ DAQ ALRR++E ++ TRF ++CN V++II + SRC ++RF PL
Sbjct: 232 LIILDEADALLPDAQAALRRMMEDFSDVTRFCILCNYVSRIIDPIASRCAKYRFKPLVRE 291
Query: 204 HVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMA-SQQITEEAVYLCT 262
+ +R++ + + E L V++ L AL R+ GD+R A+ LQ A +T+E +
Sbjct: 292 ALYDRIREIAKMEKLTVSDASLEALDRVSGGDLRSAIMYLQYAQKAHGSDLTKENFLEVS 351
Query: 263 GNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMP--SDV 320
G+ + +E+ L+ + F D +++ + +G ++ ++ ++ + P S
Sbjct: 352 GSVPMELLEKYLKALVTKDF-DGMYSLTKELVGQGFPASQLLSQLQQYIISLSCPLNSLE 410
Query: 321 RVRLMNDLADIEYRLSFGCNDKLQL 345
R R+ L D+E RLS G ++ LQL
Sbjct: 411 RSRIALKLCDVERRLSDGGDEFLQL 435
>gi|410730707|ref|XP_003980174.1| hypothetical protein NDAI_0G05150 [Naumovozyma dairenensis CBS 421]
gi|401780351|emb|CCK73498.1| hypothetical protein NDAI_0G05150 [Naumovozyma dairenensis CBS 421]
Length = 321
Score = 209 bits (531), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 117/312 (37%), Positives = 183/312 (58%), Gaps = 10/312 (3%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP L D+ + + + ++++ + +PH+++ G PG GKT++I +A +L G
Sbjct: 11 PWVEKYRPHVLKDIVGNEETILRLEQIAQDGNMPHMIISGLPGIGKTTSIHCLAHELLGD 70
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFAL 161
Y +LELNASDDRGIDVVR QI+ FA + + K K+++LDEAD+MT AQ AL
Sbjct: 71 AYSRAVLELNASDDRGIDVVRNQIKHFAQKKCYLPPGKH--KIIILDEADSMTAGAQQAL 128
Query: 162 RRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVT 221
RR +E ++ +TRFA CNQ NKII LQSRC R++ L V +RL +I+ E + T
Sbjct: 129 RRTMELFSNSTRFAFACNQSNKIIEPLQSRCAILRYSKLSDEQVLKRLLEIIKLEDVKYT 188
Query: 222 EGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNES 281
GL A++ GDMR+A+N LQST + + V+ +P P + ++ LL +
Sbjct: 189 NDGLEAIIFTAEGDMRQAINNLQSTVAGHGLVNGDNVFKIVDSPHPLIVRRM---LLAPT 245
Query: 282 FADSFKRISEMKMRKGLALVDIVR---EVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFG 338
++ + + KG + VDIV VT +F++K + R+ ++ ++ R+ G
Sbjct: 246 LDEALTYLRDDLWGKGYSAVDIVTTSFRVTKNLFELK--ENKRLEMIKEIGITHMRILEG 303
Query: 339 CNDKLQLGSIIS 350
+ LQL S+++
Sbjct: 304 VSTYLQLASMLA 315
>gi|328855833|gb|EGG04957.1| hypothetical protein MELLADRAFT_72257 [Melampsora larici-populina
98AG31]
Length = 349
Score = 209 bits (531), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 120/336 (35%), Positives = 189/336 (56%), Gaps = 9/336 (2%)
Query: 23 KDNGKNVIVSGTPPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGP 82
K NG + SG + PWVEKYRP L D+ + + ++ + + + PH+++ G
Sbjct: 12 KSNGTS---SGKKKSSEDIPWVEKYRPIILDDITGNVETIERLKVIARDGNCPHIIISGA 68
Query: 83 PGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQ-SFSFGVKAS 141
PG GKT++IL +A L G Y +LELNASD+RGIDVVR +I+ FA+T+ + G
Sbjct: 69 PGIGKTTSILCLAHALLGDSYKEGVLELNASDERGIDVVRNKIKTFANTKVTLPPGRH-- 126
Query: 142 VKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLE 201
K+++LDEAD+MT AQ ALRR +E Y +TRFAL CN +KII +QSRC R+ L
Sbjct: 127 -KIIILDEADSMTSGAQQALRRTMEIYANSTRFALACNFSSKIIEPIQSRCAILRYGKLS 185
Query: 202 PVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLC 261
+ +RL + +AE + GLAA++ GDMR+A+N LQST + ++ EAV+
Sbjct: 186 DQEILKRLVEICDAENVKYANEGLAAIIFTAEGDMRQAINNLQSTVSGFEFVSSEAVFKV 245
Query: 262 TGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKI-KMPSDV 320
P P I+Q+ + + + E+ +G + +DIV ++ V + KM +
Sbjct: 246 CDQPHPIVIKQLLAACEKGEVQTALESLDEL-WTQGYSAIDIVTTLSKVVKSMDKMAEYI 304
Query: 321 RVRLMNDLADIEYRLSFGCNDKLQLGSIISTFTQAR 356
++ + ++ R+ G + +QLG +IS + +
Sbjct: 305 KLEFIKEIGYTHMRILEGVSTIVQLGGLISRLCKLK 340
>gi|443896635|dbj|GAC73979.1| replication factor C, subunit RFC2 [Pseudozyma antarctica T-34]
Length = 374
Score = 209 bits (531), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 126/335 (37%), Positives = 187/335 (55%), Gaps = 12/335 (3%)
Query: 24 DNGKNVIVSGTPPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPP 83
D+G + SGT PWVEKYRP +L DV ++D +D + + ++ PHLL+ G P
Sbjct: 6 DSGSSAAPSGTMG--YELPWVEKYRPLNLDDVVGNKDTIDRLKVIQNDGNCPHLLISGLP 63
Query: 84 GTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQ-SFSFGVKASV 142
G GKT+++L +AR L G Y +LELNASD+RG+DVVR +I+ FA + S G
Sbjct: 64 GIGKTTSVLCLARALLGDAYKEGVLELNASDERGVDVVRNKIKTFAQKKVSLPAGRH--- 120
Query: 143 KLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEP 202
K+V+LDEAD+MT AQ ALRR +E Y+ TRF CNQ NKII +QSRC R+ ++
Sbjct: 121 KIVILDEADSMTPAAQQALRRTMEIYSNTTRFCFACNQSNKIIEPIQSRCAILRYGKVKD 180
Query: 203 VHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCT 262
+ +RL + E E ++ T+ GLAA++ GDMR+A+N LQST + E V+
Sbjct: 181 EQILKRLLEICEMEKVEYTDEGLAAIIFTTEGDMRQAINNLQSTWTGLGFVNPENVFKVC 240
Query: 263 GNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMF-VFKI--KMPSD 319
P P I + + ++ E+ KG A VDIV T+F V K ++P
Sbjct: 241 DQPHPFLIRALLTACQEGDVDLAMDKLDEI-WAKGYAAVDIV--TTLFRVVKTMDRIPEA 297
Query: 320 VRVRLMNDLADIEYRLSFGCNDKLQLGSIISTFTQ 354
++ + ++ ++ G +QLG +I+ +
Sbjct: 298 TKLEFIKEIGWTHMKILEGVATVVQLGGLIARLCK 332
>gi|193605856|ref|XP_001945771.1| PREDICTED: replication factor C subunit 2-like isoform 1
[Acyrthosiphon pisum]
gi|328696454|ref|XP_003240029.1| PREDICTED: replication factor C subunit 2-like isoform 2
[Acyrthosiphon pisum]
Length = 363
Score = 209 bits (531), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 112/329 (34%), Positives = 188/329 (57%), Gaps = 9/329 (2%)
Query: 28 NVIVSGTPPDIKA------SPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYG 81
N +++ PP K +PW+EKYRP+S D+ + + V +++ +S +P++++ G
Sbjct: 27 NNVLTTVPPQTKTVKSDLNTPWIEKYRPKSFTDIVGNEETVLRLEKFSSCGNVPNIIIAG 86
Query: 82 PPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKAS 141
PPG GKT+TILA+AR L G + +LELNAS DRGID VR +I+ FA Q +
Sbjct: 87 PPGVGKTTTILALARILLGGAFKEAVLELNASSDRGIDTVRNKIKMFAQ-QKVTLP-PGR 144
Query: 142 VKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLE 201
K+++LDEAD+MT AQ ALRR +E ++ TRFAL CN +KII A+QSRC R+ L
Sbjct: 145 HKIIILDEADSMTDGAQQALRRTMELWSNTTRFALACNNSDKIIEAIQSRCAMLRYGKLS 204
Query: 202 PVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLC 261
V ++ V ++E + + GL A+V GDMR+ALN LQST + + V+
Sbjct: 205 DQEVMTQMLKVCKSEEVSFSADGLEAVVFTAQGDMRQALNNLQSTWNGFRHVDSTNVFKV 264
Query: 262 TGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVR 321
P P ++++ +++ + ++K ++ + + G A DI+ + +++ ++
Sbjct: 265 CDEPHPLLVKEMLLECADQNISKAYKIMAHL-WKLGYAPEDIITNIFRVAKHLEIKESLK 323
Query: 322 VRLMNDLADIEYRLSFGCNDKLQLGSIIS 350
++ + ++ R+ G N LQL +++
Sbjct: 324 LKFVQEIGMAHIRIVEGMNSLLQLSGLLA 352
>gi|147905139|ref|NP_001082757.1| replication factor C (activator 1) 4, 37kDa [Xenopus laevis]
gi|34097966|dbj|BAC82198.1| replication factor C p37 subunit [Xenopus laevis]
gi|120537910|gb|AAI29743.1| RFC2 protein [Xenopus laevis]
Length = 363
Score = 209 bits (531), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 126/345 (36%), Positives = 198/345 (57%), Gaps = 13/345 (3%)
Query: 20 LKPKDNGKNVIVSGTPPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLL 79
+K K + +G K PWVEKYRP+ + +VA ++V + + LP+LL
Sbjct: 16 VKDKASASGTGSTGESKKQKPIPWVEKYRPKCVDEVAFQDEVVAVLKKSLQGADLPNLLF 75
Query: 80 YGPPGTGKTSTILAVARKLYGAQ-YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGV 138
YGPPGTGKTSTILA +R+LYG + + +LELNASD+RGI VVR+++++FA Q G
Sbjct: 76 YGPPGTGKTSTILAASRELYGPELFRQRVLELNASDERGIQVVREKVKNFA--QLTVGGT 133
Query: 139 KAS------VKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRC 192
++ K+++LDEAD+MT AQ ALRR +EK +K TRF LICN V++II L SRC
Sbjct: 134 RSDGKPCPPFKIIILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRC 193
Query: 193 TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMAS-- 250
++FRF PL T+RL + E E + +T ++ LV + GD+RKA+ LQS +
Sbjct: 194 SKFRFKPLADKIQTQRLLSICEKENVQITNEAISCLVEVSEGDLRKAITFLQSAARLTRG 253
Query: 251 QQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMF 310
++ITEE V G + ++ + + SF + ++ + G A +V ++
Sbjct: 254 KEITEEIVTEIAGVVPKETLDSVLVVCQSGSFEKLENFVKDL-INNGHAATQLVNQLHDV 312
Query: 311 VFKIKMPSDVRVRLMND-LADIEYRLSFGCNDKLQLGSIISTFTQ 354
+ + +D + + + LAD++ L+ G ++ LQ+ + + Q
Sbjct: 313 ILERGDLTDKQKAFITEKLADVDKCLTDGADEYLQMLGLFAVVMQ 357
>gi|193702269|ref|XP_001948634.1| PREDICTED: replication factor C subunit 4-like [Acyrthosiphon
pisum]
Length = 359
Score = 209 bits (531), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 114/247 (46%), Positives = 152/247 (61%), Gaps = 12/247 (4%)
Query: 17 NQNLKPKDNGKNVIVSGTPPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENR-LP 75
+ LK KD + + S TP WVEKYRP+++ +V+ +IV + + + +P
Sbjct: 18 SSGLKSKDGSRGISNSTTP-------WVEKYRPRTVDEVSEQSEIVAVLKQCLEQGADMP 70
Query: 76 HLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFA----ST 131
HLL YGPPGTGKTSTI+A AR+L+G Y N +LELNASDDRGI V+R +++ FA S
Sbjct: 71 HLLFYGPPGTGKTSTIIAAARQLFGDMYKNRMLELNASDDRGIQVIRDKVKTFAQLTASD 130
Query: 132 QSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSR 191
+ K+V+LDEAD+MT AQ ALRR IE+ TK TRF LICN V+ II L SR
Sbjct: 131 RRPDGKPCPPFKIVVLDEADSMTAPAQAALRRTIERETKTTRFCLICNYVSCIIDPLTSR 190
Query: 192 CTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQ 251
C++FRF PL + RL+H+ + EG+ LA LV GDMR+A+ LQST
Sbjct: 191 CSKFRFKPLSHEIMLTRLEHICKEEGVKCAPRVLARLVDASGGDMRRAITSLQSTARLKG 250
Query: 252 QITEEAV 258
++ E V
Sbjct: 251 EVGIEEV 257
>gi|170030843|ref|XP_001843297.1| replication factor C subunit 4 [Culex quinquefasciatus]
gi|167868416|gb|EDS31799.1| replication factor C subunit 4 [Culex quinquefasciatus]
Length = 355
Score = 209 bits (531), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 105/212 (49%), Positives = 141/212 (66%), Gaps = 8/212 (3%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP+++ DV ++V + S LP+LLLYGPPGTGKTSTILA AR+L+G
Sbjct: 31 PWVEKYRPKNVDDVVEQGEVVAVLRESLSTADLPNLLLYGPPGTGKTSTILAAARQLFGD 90
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKAS------VKLVLLDEADAMTK 155
+ ILELNASDDRGI V+R +++ FA Q + G + K+V+LDEADAMT
Sbjct: 91 MFKERILELNASDDRGIAVIRNKVKTFA--QLAASGTRPDGKPCPPFKIVILDEADAMTH 148
Query: 156 DAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEA 215
AQ ALRR +EK TK TRF L+CN V++II + SRCT+FRF PL + ERL+ + +
Sbjct: 149 AAQAALRRTMEKETKTTRFCLVCNYVSRIIEPITSRCTKFRFKPLRQEKIIERLRFICDQ 208
Query: 216 EGLDVTEGGLAALVRLCNGDMRKALNILQSTH 247
E ++V + +V + GD+R+A+ LQS H
Sbjct: 209 ETVEVEDQAYQDIVDISGGDLRRAITTLQSCH 240
>gi|149234968|ref|XP_001523363.1| activator 1 41 kDa subunit [Lodderomyces elongisporus NRRL YB-4239]
gi|146453152|gb|EDK47408.1| activator 1 41 kDa subunit [Lodderomyces elongisporus NRRL YB-4239]
Length = 402
Score = 209 bits (531), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 108/229 (47%), Positives = 146/229 (63%), Gaps = 13/229 (5%)
Query: 41 SPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYG 100
+PWVEKYRP++L DVA+ V + + S LPH+L YGPPGTGKTSTILA+A++LYG
Sbjct: 35 TPWVEKYRPKNLDDVASQDHAVKVLKKQISTGNLPHMLFYGPPGTGKTSTILALAKQLYG 94
Query: 101 AQ-YHNMILELNASDDRGIDVVRQQIQDFA-------STQSFSFGVKASVKLVLLDEADA 152
Y + +LELNASD+RGI +VRQ+I++FA + K+++LDEAD+
Sbjct: 95 PNLYKSRVLELNASDERGISIVRQKIKNFAKLTVSNPTEDDLRNYPCPPYKIIILDEADS 154
Query: 153 MTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHV 212
MT DAQ ALRR +E Y TRFAL+CN + +II L SRC++FRF L + RLK++
Sbjct: 155 MTNDAQSALRRTMETYANITRFALVCNYITRIIDPLASRCSKFRFKLLNNENSLNRLKYI 214
Query: 213 IEAEGLDVTEGG-----LAALVRLCNGDMRKALNILQSTHMASQQITEE 256
+ E L + E G L ++R+ NGDMRKA+ LQS S + E
Sbjct: 215 AKEENLHLDEKGAPDEVLNEVLRISNGDMRKAITYLQSASKLSSSLQLE 263
>gi|374109199|gb|AEY98105.1| FAFR422Wp [Ashbya gossypii FDAG1]
Length = 349
Score = 208 bits (530), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 106/245 (43%), Positives = 155/245 (63%), Gaps = 14/245 (5%)
Query: 39 KASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKL 98
++ PWVEKYRP+ L DVA+ + + R LPH+L YGPPGTGKTSTILA+ ++L
Sbjct: 20 ESKPWVEKYRPRKLDDVASQAHAITVLKRTLESANLPHMLFYGPPGTGKTSTILALTKEL 79
Query: 99 YGAQY-HNMILELNASDDRGIDVVRQQIQDFA-------STQSFSFGVKASVKLVLLDEA 150
+G + +LELNASD+RGI +VR+++++FA + + K+++LDEA
Sbjct: 80 FGPSLMKSRVLELNASDERGISIVREKVKNFARLTVTNPTKEDLEQYPCPPYKIIILDEA 139
Query: 151 DAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLK 210
D+MT DAQ ALRR +E Y+ TRF LICN V +II L SRC++FRF PL+ V+ RL+
Sbjct: 140 DSMTADAQSALRRTMETYSSVTRFCLICNYVTRIIDPLASRCSKFRFKPLDNVNALGRLE 199
Query: 211 HVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQ-----STHMASQQITEEAVYLCTGNP 265
+ + E L G L ++ + GD+RKA+ +LQ +++MA+++IT V G
Sbjct: 200 QIAQQEALSYEAGALEKVLHIAEGDLRKAITLLQTAAKMTSYMAAEKITTAQVEELAG-V 258
Query: 266 LPKDI 270
+P DI
Sbjct: 259 VPDDI 263
>gi|190347750|gb|EDK40085.2| hypothetical protein PGUG_04183 [Meyerozyma guilliermondii ATCC
6260]
Length = 347
Score = 208 bits (530), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 102/216 (47%), Positives = 147/216 (68%), Gaps = 8/216 (3%)
Query: 38 IKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARK 97
++ +PWVEKYRP++L DVA+ V+ + + LPH+L YGPPGTGKTST+LA+AR+
Sbjct: 17 LEHTPWVEKYRPKNLDDVASQDHAVNVLKKSLVSANLPHMLFYGPPGTGKTSTVLALARE 76
Query: 98 LYGAQY-HNMILELNASDDRGIDVVRQQIQDFA-------STQSFSFGVKASVKLVLLDE 149
LYG + +LELNASD+RGI +VRQ++++FA S + KL++LDE
Sbjct: 77 LYGPDLIKSRVLELNASDERGIAIVRQKVKNFARLTVSNASPEDLEKYPCPPYKLIILDE 136
Query: 150 ADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERL 209
AD+MT DAQ ALRR +E Y+ TRF LICN + +II L SRC++FRF PL + +RL
Sbjct: 137 ADSMTYDAQAALRRTMETYSGVTRFCLICNYITRIIDPLASRCSKFRFKPLANDNAVQRL 196
Query: 210 KHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQS 245
+++++ E L+V E + L+ + NGD+R+A+ LQS
Sbjct: 197 RYIVQQEELNVDEDVFSYLLTISNGDLRRAITYLQS 232
>gi|327282022|ref|XP_003225743.1| PREDICTED: replication factor C subunit 4-like [Anolis
carolinensis]
Length = 364
Score = 208 bits (530), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 124/330 (37%), Positives = 201/330 (60%), Gaps = 15/330 (4%)
Query: 32 SGTPPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTI 91
SG ++ PWVEKYRP+ + +VA ++V + + LP+LL YGPPGTGKTSTI
Sbjct: 30 SGEGKRVRPLPWVEKYRPKCMDEVAFQEEVVAVLKKCLQGADLPNLLFYGPPGTGKTSTI 89
Query: 92 LAVARKLYGAQ-YHNMILELNASDDRGIDVVRQQIQDFAS---TQSFSFG-VKASVKLVL 146
LA AR+L+G + + +LELNASD+RGI V+R++++ FA + S S G + K+V+
Sbjct: 90 LAAARELFGTELFRQRVLELNASDERGIQVIREKVKRFAQLTVSGSRSDGKLCPPFKIVI 149
Query: 147 LDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVT 206
LDEAD+MT AQ ALRR +EK +K TRF LICN +++II + SRC++FRF PL
Sbjct: 150 LDEADSMTSAAQAALRRTMEKESKTTRFCLICNYISRIIEPITSRCSKFRFKPLSDKIQR 209
Query: 207 ERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTH--MASQQITEEAVYLCTGN 264
+RL V E E + V+ ++ LV + GD+RKA+ +LQS M +++TE+ V G
Sbjct: 210 QRLVEVAEKENVAVSSEAISYLVHVSEGDLRKAITLLQSATRLMGGKEVTEKIVTEIAGV 269
Query: 265 PLPKDIEQISYWLLNESFADSFKRISEMK---MRKGLALVDIVREVTMFVFKIKMPSDVR 321
+P+++ +L + SF+++ + + +G A ++ ++ + + + SD +
Sbjct: 270 -IPREMLD---GVLASCQSGSFEKLEAVTKNLIDEGYAATQLINQLHDVIVEREDLSDKQ 325
Query: 322 VRLMND-LADIEYRLSFGCNDKLQLGSIIS 350
++ + LA+++ L G ++ LQL S+ +
Sbjct: 326 KSIIAEKLAEVDKCLVDGSDEFLQLTSLCA 355
>gi|448537421|ref|XP_003871334.1| Rfc2 heteropentameric replication factor C subunit [Candida
orthopsilosis Co 90-125]
gi|380355691|emb|CCG25209.1| Rfc2 heteropentameric replication factor C subunit [Candida
orthopsilosis]
Length = 355
Score = 208 bits (530), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 124/337 (36%), Positives = 190/337 (56%), Gaps = 30/337 (8%)
Query: 41 SPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYG 100
+PWVEKYRP++L D+A+ V +++ S LPH+L YGPPGTGKTSTILA+A++LYG
Sbjct: 14 TPWVEKYRPKNLNDIASQEHAVKVLEKQVSTGNLPHMLFYGPPGTGKTSTILALAKQLYG 73
Query: 101 AQ-YHNMILELNASDDRGIDVVRQQIQDFA-------STQSFSFGVKASVKLVLLDEADA 152
Y + +LELNASD+RGI +VRQ+I++FA + + K+++LDEAD+
Sbjct: 74 PNLYKSRVLELNASDERGISIVRQKIKNFAKLTVSNPTPEDLKNYPCPPYKIIILDEADS 133
Query: 153 MTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHV 212
MT DAQ ALRR +E Y TRFAL+CN + +II L SRC++FRF L + RLK++
Sbjct: 134 MTNDAQSALRRTMETYANITRFALVCNYITRIIDPLASRCSKFRFKLLNNENSLNRLKYI 193
Query: 213 IEAEGLDV-----TEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLP 267
E L++ +G L ++++ NGD+RKA+ LQS S + E +
Sbjct: 194 ANEEQLNLDKSQGEDGVLNEVLKISNGDLRKAITYLQSASKLSTSLQLEDDQDGNAGLIT 253
Query: 268 KDIEQISYWLLNESFADSFKRISEMKMRKGL---------------ALVDIVREVTMFVF 312
K + + +L + DS + K + L L+D + EV V
Sbjct: 254 KQSIRETAGVLPDELIDSLIKTIRSKNEEKLISLVNDIILSGWSAQQLIDQLHEV--LVI 311
Query: 313 KIKMPSDVRVRLMNDLADIEYRLSFGCNDKLQLGSII 349
+ S V+ ++ L D + +L+FG ++ +QL +++
Sbjct: 312 DDSINSLVKNQIALILFDTDKKLNFGTDEHIQLLNLV 348
>gi|71408237|ref|XP_806535.1| replication factor C, subunit 2 [Trypanosoma cruzi strain CL
Brener]
gi|70870309|gb|EAN84684.1| replication factor C, subunit 2, putative [Trypanosoma cruzi]
Length = 347
Score = 208 bits (530), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 120/325 (36%), Positives = 190/325 (58%), Gaps = 16/325 (4%)
Query: 36 PDIKASPWVEKYRPQSLADVAAHRDIVDTID-RLTSENRLPHLLLYGPPGTGKTSTILAV 94
P A+PWVEKYRP +L++V + + V + L +PH L +GPPGTGKT+ ILAV
Sbjct: 14 PKPNATPWVEKYRPMTLSEVKSQEEAVCALRASLQPSASMPHFLFHGPPGTGKTTAILAV 73
Query: 95 ARKLYGAQY-HNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKAS----------VK 143
AR+L+G Y H+ + E+NASDDRGI V+R++++ FA T S G K K
Sbjct: 74 ARELFGPDYVHSRVREMNASDDRGIQVIREKVKVFAQTAVGSVGHKVQSDGQVYPVPQFK 133
Query: 144 LVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPV 203
L++LDEADA+ DAQ ALRR++E ++ TRF ++CN V++II + SRC ++RF PL
Sbjct: 134 LIILDEADALLPDAQAALRRMMEDFSDVTRFCILCNYVSRIIDPIASRCAKYRFKPLVRE 193
Query: 204 HVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMA-SQQITEEAVYLCT 262
+ +R++ + + E + V++ L AL R+ GD+R A+ LQ A +T+E +
Sbjct: 194 TLYDRIREIAKMEEITVSDASLEALDRVSGGDLRSAIMYLQYAQKAHGSDLTKENFLEVS 253
Query: 263 GNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMP--SDV 320
G+ + +E+ L+ + F D +++ + +G ++ ++ ++ P S V
Sbjct: 254 GSVPMELLEKYLKALVTKDF-DGMYSLTKEIVGQGFPASQLLSQLHQYIIGSSCPLNSLV 312
Query: 321 RVRLMNDLADIEYRLSFGCNDKLQL 345
R R+ L D+E RLS G ++ LQL
Sbjct: 313 RSRIALKLCDVERRLSDGGDEFLQL 337
>gi|354484828|ref|XP_003504588.1| PREDICTED: replication factor C subunit 2-like [Cricetulus griseus]
Length = 325
Score = 208 bits (530), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 117/319 (36%), Positives = 182/319 (57%), Gaps = 3/319 (0%)
Query: 44 VEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQY 103
VEKYRP L ++ + D V ++ E +P++++ GPPGTGKT++IL +AR L G
Sbjct: 10 VEKYRPIKLDEIVGNEDTVSRLEVFAKEGNVPNIIIAGPPGTGKTTSILCLARALLGPAL 69
Query: 104 HNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRR 163
+ +LELNAS+DRGIDVVR +I+ FA Q + K K+++LDEAD+MT AQ ALRR
Sbjct: 70 KDAVLELNASNDRGIDVVRNKIKMFAQ-QKVTLP-KGRHKIIILDEADSMTDGAQQALRR 127
Query: 164 VIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEG 223
+E Y+K TRFAL CN +KII +QSRC R+ L V RL +VIE E + T+
Sbjct: 128 TMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQVLTRLMNVIEKEKVPYTDD 187
Query: 224 GLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESFA 283
GL A++ GDMR+ALN LQST I E V+ P P ++++ ++ +
Sbjct: 188 GLEAIIFTAQGDMRQALNNLQSTFSGFGYINSENVFKVCDEPHPLLVKEMIQHCVDANID 247
Query: 284 DSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDKL 343
+++K ++ + G + DI+ + M +++ + ++ +++ G N L
Sbjct: 248 EAYKILAHL-WHLGYSPEDIISNIFRVCKTFPMAEYLKLEFIKEIGYTHMKVAEGVNSLL 306
Query: 344 QLGSIISTFTQARSAIVAA 362
Q+ +++ Q A VA+
Sbjct: 307 QMAGLLARLCQKTMAPVAS 325
>gi|449550911|gb|EMD41875.1| hypothetical protein CERSUDRAFT_102269 [Ceriporiopsis subvermispora
B]
Length = 346
Score = 208 bits (530), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 119/317 (37%), Positives = 183/317 (57%), Gaps = 10/317 (3%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRPQ L DV + + ++ + + + PH+++ G PG GKT++I +A +L G
Sbjct: 25 PWVEKYRPQKLDDVVGNTETIERLKIIARDGNCPHIIISGMPGIGKTTSIHCLAHQLLGD 84
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQ-SFSFGVKASVKLVLLDEADAMTKDAQFA 160
Y +LELNASD+RGIDVVR +I+ FA + + G + K+V+LDEAD+MT AQ A
Sbjct: 85 AYKEGVLELNASDERGIDVVRNKIKTFAQKKVTLPPGRQ---KIVILDEADSMTSGAQQA 141
Query: 161 LRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDV 220
LRR +E Y TRFAL CN NKII +QSRC R+ L V +RL + +AE +
Sbjct: 142 LRRTMEIYANTTRFALACNMSNKIIEPIQSRCAILRYTKLRDTEVLQRLLEICQAEQVKY 201
Query: 221 TEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNE 280
+ GL AL+ GDMR+A+N LQSTH ++ + V+ P P ++ + L
Sbjct: 202 NDDGLTALIFTAEGDMRQAINNLQSTHSGFGFVSGDNVFKVCDQPHPIVVQAMIGACLKG 261
Query: 281 SFADSFKRISEMKMRKGLALVDIVREVTMF-VFKI--KMPSDVRVRLMNDLADIEYRLSF 337
+ + ++++E+ +G + VDIV VT+F V K ++P ++ + ++ R+
Sbjct: 262 NIDGAMEKLNEL-WDQGYSAVDIV--VTIFRVVKTYDEIPEYTKLEYIKEIGFTHMRILE 318
Query: 338 GCNDKLQLGSIISTFTQ 354
G +QLG ++S +
Sbjct: 319 GVGTLVQLGGLMSRLCK 335
>gi|50555415|ref|XP_505116.1| YALI0F07337p [Yarrowia lipolytica]
gi|49650986|emb|CAG77923.1| YALI0F07337p [Yarrowia lipolytica CLIB122]
Length = 333
Score = 208 bits (529), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 115/310 (37%), Positives = 177/310 (57%), Gaps = 4/310 (1%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP L DV H + V+ + + + +P+LL+ G PG GKT+++ +AR L G
Sbjct: 19 PWVEKYRPMYLDDVVGHTETVERLKIMAKDGNIPNLLISGLPGIGKTTSVHCLARTLLGP 78
Query: 102 Q-YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFA 160
Q Y + +LELNASDDRGI+VVR +I++FA + K K+++LDEAD+MT AQ A
Sbjct: 79 QLYKDAVLELNASDDRGIEVVRGKIKNFAQKKVTMPPGKH--KIIILDEADSMTAGAQNA 136
Query: 161 LRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDV 220
L+R +E Y+ TRFA CNQ NKII A+QSRC RF L V ERL H++EAE +
Sbjct: 137 LKRTMELYSDTTRFAFACNQSNKIIEAIQSRCAILRFGRLSNEQVLERLLHIVEAENVQC 196
Query: 221 TEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNE 280
++ GL+AL+ GDMR+A+N LQ T + V+ +P P ++ +
Sbjct: 197 SDDGLSALIFSAEGDMRQAINNLQGTVSGFGFVNSSNVWKVVDSPHPVVVKSMLDACSKG 256
Query: 281 SFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCN 340
++ + + ++ KG + DI+ + +++P +R+ + ++ R+ G
Sbjct: 257 EVTEACESLKQL-WTKGYSAQDIISTMFRVTKTLEVPEALRLEYIKEIGFTHMRILEGIT 315
Query: 341 DKLQLGSIIS 350
LQL ++
Sbjct: 316 TYLQLAGCVA 325
>gi|307110140|gb|EFN58376.1| hypothetical protein CHLNCDRAFT_59565 [Chlorella variabilis]
Length = 340
Score = 208 bits (529), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 115/319 (36%), Positives = 182/319 (57%), Gaps = 14/319 (4%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP + D+ + + V + + E +P+++L GPPGTGKT++IL +A +L G
Sbjct: 23 PWVEKYRPTRIKDIVGNVEAVSRLQIIAEEGNMPNIILAGPPGTGKTTSILCLAHELLGP 82
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQ-SFSFGVKASVKLVLLDEADAMTKDAQFA 160
+ +LELNASDDRGIDVVR +I+ FA + + G K+V+LDEAD+MT AQ A
Sbjct: 83 NFREAVLELNASDDRGIDVVRNKIKMFAQQKVTLPLGRH---KIVILDEADSMTSGAQQA 139
Query: 161 LRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDV 220
LRR +E Y+ TRFAL CNQ +KII +QSRC R++ L + +RL HV + EG+
Sbjct: 140 LRRTMEIYSSTTRFALACNQSSKIIEPIQSRCAIVRYSKLSDKELLQRLLHVCQEEGVAH 199
Query: 221 TEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNE 280
T GL A+V +GDMR+ALN +Q+T ++++ V+ P P + + L+
Sbjct: 200 TPDGLEAVVFTADGDMRQALNNVQATANGFGLVSQDHVFRVCDQPHPVLVSSVVRHCLDA 259
Query: 281 SFADSFKRISEMKMRKGLALVDIVREVTMFVFKI-----KMPSDVRVRLMNDLADIEYRL 335
D+++ + + G + DI+ +F++ M +++ + + R+
Sbjct: 260 RIDDAYEGLRAL-CDMGYSASDII----TILFRVVRNFTGMNEYLKLEYIKQIGFCHMRV 314
Query: 336 SFGCNDKLQLGSIISTFTQ 354
G N +LQL +++ +
Sbjct: 315 GDGVNSRLQLSGLLAELCK 333
>gi|170027981|ref|XP_001841875.1| replication factor C subunit 2 [Culex quinquefasciatus]
gi|167868345|gb|EDS31728.1| replication factor C subunit 2 [Culex quinquefasciatus]
Length = 344
Score = 208 bits (529), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 114/329 (34%), Positives = 181/329 (55%), Gaps = 9/329 (2%)
Query: 32 SGTPPDIKAS------PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGT 85
SG D+ A+ PW+EKYRPQ ++ + D V + ++ P++++ GPPG
Sbjct: 13 SGAAKDVAANKKKANLPWIEKYRPQKFEEIVGNEDTVSRLGVFATQGNAPNIIIAGPPGV 72
Query: 86 GKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLV 145
GKT+TIL +AR L G + +LELNAS++RGIDVVR +I+ FA Q + + K+V
Sbjct: 73 GKTTTILCLARILLGENFREAVLELNASNERGIDVVRNKIKMFAQ-QKVTL-PRGRHKIV 130
Query: 146 LLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHV 205
+LDEAD+MT+ AQ ALRR +E Y+ TRFAL CN KII +QSRC R++ L V
Sbjct: 131 ILDEADSMTEGAQQALRRTMEIYSNTTRFALACNTSEKIIEPIQSRCAMLRYSKLSDSQV 190
Query: 206 TERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNP 265
+L + + E L E GL A+V GDMR+ALN LQST I+ V+ P
Sbjct: 191 LAKLIEICQKEALSYDEDGLEAIVFTAQGDMRQALNNLQSTANGFGHISGANVFKVCDEP 250
Query: 266 LPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLM 325
P ++ + + ++K ++++ R G A DI+ + ++ M +++ +
Sbjct: 251 HPMLVQDMLEHCVKGDVHKAYKIMAKL-WRLGYAAEDIIGNIFRVCKRMNMNEKLKLCFI 309
Query: 326 NDLADIEYRLSFGCNDKLQLGSIISTFTQ 354
++ + ++ G N LQ+ +++ +
Sbjct: 310 REIGETHMKIVDGLNSLLQMSGLLAKLCE 338
>gi|169776925|ref|XP_001822928.1| replication factor C subunit 4 [Aspergillus oryzae RIB40]
gi|83771665|dbj|BAE61795.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|391874280|gb|EIT83190.1| replication factor C, subunit RFC2 [Aspergillus oryzae 3.042]
Length = 352
Score = 208 bits (529), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 124/333 (37%), Positives = 187/333 (56%), Gaps = 11/333 (3%)
Query: 26 GKNVIVSGTPPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGT 85
G + +G P D + PWVEKYRP L DV + + ++ + + + +PH+++ G PG
Sbjct: 14 GLKPVTAGAPSDYEL-PWVEKYRPVFLDDVVGNTETIERLKIIAKDGNMPHVIISGMPGI 72
Query: 86 GKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQ-SFSFGVKASVKL 144
GKT++IL +AR+L G Y +LELNASD+RGIDVVR +I+ FA + + G K+
Sbjct: 73 GKTTSILCLARQLLGDAYKEAVLELNASDERGIDVVRNRIKGFAQKKVTLPPGRH---KI 129
Query: 145 VLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVH 204
V+LDEAD+MT AQ ALRR +E Y+ TRFA CNQ NKII +QSRC R+A L
Sbjct: 130 VILDEADSMTPGAQQALRRTMEIYSSTTRFAFACNQSNKIIEPIQSRCAILRYARLTDGQ 189
Query: 205 VTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGN 264
V +RLK V +AE ++ TE G+AALV GDMR+A+N LQST ++ + V+ +
Sbjct: 190 VVKRLKQVCDAEKVEHTEDGIAALVFSAEGDMRQAINNLQSTWSGFGFVSGDNVFRVVDS 249
Query: 265 PLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPS---DVR 321
P P ++ + + + ++E+ G + DI+ TMF +P+ +
Sbjct: 250 PHPIKVQAMIKACWEGKVDAALETLNEL-WDLGYSSHDIIS--TMFRVTKTIPTLSEHSK 306
Query: 322 VRLMNDLADIEYRLSFGCNDKLQLGSIISTFTQ 354
+ + ++ R+ G LQL I+ +
Sbjct: 307 LEFIREIGFTHMRILDGVQSLLQLSGCIAKLCK 339
>gi|157167248|ref|XP_001652243.1| replication factor C, 37-kDa subunit, putative [Aedes aegypti]
gi|94469174|gb|ABF18436.1| replication factor C [Aedes aegypti]
gi|108877369|gb|EAT41594.1| AAEL006788-PA [Aedes aegypti]
Length = 358
Score = 208 bits (529), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 109/212 (51%), Positives = 141/212 (66%), Gaps = 8/212 (3%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP+S+ DV ++V + S LP+LLLYGPPGTGKTSTILA AR+L+G
Sbjct: 34 PWVEKYRPKSVDDVVEQAEVVAVLRESLSTADLPNLLLYGPPGTGKTSTILAAARQLFGD 93
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKAS------VKLVLLDEADAMTK 155
+ ILELNASDDRGI V+R +++ FA Q + G + K+V+LDEADAMT
Sbjct: 94 MFKERILELNASDDRGIAVIRNKVKTFA--QLTASGTRTDGKPCPPFKIVILDEADAMTH 151
Query: 156 DAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEA 215
AQ ALRR +EK TK TRF L+CN V++II + SRCT+FRF PL V ERL+ + E
Sbjct: 152 AAQAALRRTMEKETKTTRFCLVCNYVSRIIEPITSRCTKFRFKPLGEEKVIERLRFICEQ 211
Query: 216 EGLDVTEGGLAALVRLCNGDMRKALNILQSTH 247
E +DV + +V + GD+R+A+ LQS H
Sbjct: 212 ENVDVEDQAYREIVDISGGDLRRAITTLQSCH 243
>gi|340059150|emb|CCC53532.1| putative replication factor C, subunit 4 [Trypanosoma vivax Y486]
Length = 339
Score = 208 bits (529), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 129/335 (38%), Positives = 185/335 (55%), Gaps = 20/335 (5%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP SLADV + D V + + E LP+LLL GPPGTGKT+++L +AR L
Sbjct: 7 PWVEKYRPVSLADVVGNADAVVRLHVIAREGNLPNLLLCGPPGTGKTTSMLCLARSLLSD 66
Query: 102 Q-------YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASV---------KLV 145
Q +LELNASDDRG+DVVR++I+ FA T+ + K V K+V
Sbjct: 67 QDGASNSALKEAVLELNASDDRGLDVVREKIKLFAQTKK-TLPQKMDVTDQRRINLHKIV 125
Query: 146 LLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHV 205
+LDEAD+MT AQ ALRR IE ++ TRFA CN +KII +QSRC RF L +
Sbjct: 126 ILDEADSMTPAAQQALRRTIELHSGATRFAFACNNSHKIIEPIQSRCAVVRFRKLTHGDI 185
Query: 206 TERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNP 265
+RL H+I+ E + T+ GL AL+ L +GD+R A+N LQ+T + E V+ P
Sbjct: 186 LKRLMHIIKQENVTYTDDGLEALLYLADGDLRSAVNALQATCSGYGVVNAENVFKVCDQP 245
Query: 266 LPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRL- 324
+E I L A + K + + + +G A+ D++ K+ D++++L
Sbjct: 246 HALLVESIMSSCLKHDLAAAHKEMQRL-LGRGYAVSDVISTFFRVAQNPKLFLDLQLQLA 304
Query: 325 -MNDLADIEYRLSFGCNDKLQLGSIISTFTQARSA 358
+ + + R++ G LQL S++ A SA
Sbjct: 305 VLQIIGETTMRVAEGVGSPLQLASMLDRILVATSA 339
>gi|195481163|ref|XP_002101540.1| GE15569 [Drosophila yakuba]
gi|194189064|gb|EDX02648.1| GE15569 [Drosophila yakuba]
Length = 353
Score = 208 bits (529), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 116/324 (35%), Positives = 189/324 (58%), Gaps = 23/324 (7%)
Query: 35 PPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAV 94
PP +PWVEKYRP+++ DV ++V + + LP++LLYGPPGTGKTSTILA
Sbjct: 28 PP----APWVEKYRPRNVDDVVEQSEVVAVLRKCVEGGDLPNMLLYGPPGTGKTSTILAA 83
Query: 95 ARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKAS----VKLVLLDEA 150
+R+++G + + ILELNASD+RGI+VVR +I++F+ + S K+++LDEA
Sbjct: 84 SRQIFGDMFKDRILELNASDERGINVVRTKIKNFSQLSASSVRPDGKPCPPFKIIILDEA 143
Query: 151 DAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLK 210
D+MT AQ ALRR +EK +++TRF LICN V++II + SRC++FRF L V +RLK
Sbjct: 144 DSMTHAAQSALRRTMEKESRSTRFCLICNYVSRIIVPITSRCSKFRFKALGDDKVIDRLK 203
Query: 211 HVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTH--MASQQITEEAVYLCTGNPLPK 268
++ EG+ + E ++V++ GD+R+A+ LQS + + I A +P+
Sbjct: 204 YICAMEGVKIEEDAYKSIVKISGGDLRRAITTLQSCYRLKGPEHIINTADLFEMSGVIPE 263
Query: 269 DIEQISYWL---LNESFADSFKRISEMKMRKGLALVDIVREVTMFV-FKIKMPS---DVR 321
Y+L L + +++R+ + G + + + + FV F + P +
Sbjct: 264 ------YYLEDYLEVCRSGNYERLEQFVREIGFSAYSVGQMMEQFVEFVVHHPGLNDPQK 317
Query: 322 VRLMNDLADIEYRLSFGCNDKLQL 345
++ + L + +RL G ++ LQ+
Sbjct: 318 AKICDKLGECCFRLQDGGSEYLQI 341
>gi|167518313|ref|XP_001743497.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163778596|gb|EDQ92211.1| predicted protein [Monosiga brevicollis MX1]
Length = 384
Score = 208 bits (529), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 116/312 (37%), Positives = 177/312 (56%), Gaps = 5/312 (1%)
Query: 44 VEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQY 103
VEKYRPQ L D+ + V + + + +P++++ GPPG GKT++IL +AR L G Y
Sbjct: 68 VEKYRPQVLDDIVGNEATVSRLKVIAKDGNMPNIIIAGPPGIGKTTSILCLARTLLGKSY 127
Query: 104 HNMILELNASDDRGIDVVRQQIQDFASTQ-SFSFGVKASVKLVLLDEADAMTKDAQFALR 162
++E NASDDRGIDVVR +I+ FA + S G K+V+LDE D+MT AQ ALR
Sbjct: 128 KEAVMETNASDDRGIDVVRNKIKMFAKKKVSLPPGRH---KIVILDEVDSMTPTAQQALR 184
Query: 163 RVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTE 222
R IE Y+ TRFAL CN KII +QSRCT R+ L V +RL V +AE + +
Sbjct: 185 RTIELYSNTTRFALACNTSEKIIDPIQSRCTILRYTRLTDAQVLKRLIDVCQAEKIVQLD 244
Query: 223 GGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESF 282
GL AL+ GDMR+A+N LQSTH + +I+ + V+ P P ++ + L S
Sbjct: 245 SGLEALIFTAEGDMRQAINNLQSTHQSFGEISADKVFKVCDQPHPLLVKNVVKACLEGSI 304
Query: 283 ADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDK 342
++ ++E+ R G A +DI+ + +MP +++ + ++ R+ G +
Sbjct: 305 DVAYDGLAEL-WRLGYAAIDIINVIFRVTKSYEMPEGIKLEYIKEIGRSHLRILEGLDSF 363
Query: 343 LQLGSIISTFTQ 354
+QL +++ +
Sbjct: 364 MQLSGLVARLCR 375
>gi|426217728|ref|XP_004003104.1| PREDICTED: replication factor C subunit 4 isoform 2 [Ovis aries]
Length = 337
Score = 208 bits (529), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 128/331 (38%), Positives = 191/331 (57%), Gaps = 36/331 (10%)
Query: 32 SGTPPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTI 91
SG K PWVEKYRP+ + +VA ++V + + LP+LL YGPPGTGKTSTI
Sbjct: 29 SGENKKAKPVPWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTI 88
Query: 92 LAVARKLYGAQYHNM-ILELNASDDRGIDVVRQQIQDFAS---TQSFSFGVKAS-VKLVL 146
LA AR+L+G + + +LELNASD+RGI VVR+++++FA + S S G K+V+
Sbjct: 89 LAAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPPFKIVI 148
Query: 147 LDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVT 206
LDEAD+MT AQ ALRR +EK +K TRF LICN V++II L SRC++FRF PL
Sbjct: 149 LDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQ 208
Query: 207 ERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTH--MASQQITEEAVYLCTGN 264
+RL + + E + ++ G+A LV++ GD+RKA+ LQS +++TE+ + G+
Sbjct: 209 QRLLDIADKEHVKISNEGIAYLVKVSEGDLRKAITFLQSATRLTGGKEVTEKVITDIAGD 268
Query: 265 PLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRL 324
L+NE G A +V ++ V + SD + +
Sbjct: 269 ------------LINE----------------GHAATQLVNQLHDVVVENDNLSDKQKSI 300
Query: 325 MND-LADIEYRLSFGCNDKLQLGSIISTFTQ 354
+ + LA+++ L+ G ++ LQL S+ +T Q
Sbjct: 301 ITEKLAEVDKCLADGADEHLQLISLCATVMQ 331
>gi|449299144|gb|EMC95158.1| hypothetical protein BAUCODRAFT_35150 [Baudoinia compniacensis UAMH
10762]
Length = 411
Score = 208 bits (529), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 104/222 (46%), Positives = 147/222 (66%), Gaps = 13/222 (5%)
Query: 37 DIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVAR 96
D + PWVEKYRP+SL DV A V + R+ + LPH+L YGPPGTGKTST+LA+A+
Sbjct: 31 DNRLQPWVEKYRPRSLDDVTAQDHTVTVLRRMLQSSNLPHMLFYGPPGTGKTSTVLALAK 90
Query: 97 KLYGAQY-HNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKAS------------VK 143
+LYG + + +LELNASD+RGI +VR++++DFA Q + + K
Sbjct: 91 QLYGPELIKSRVLELNASDERGISIVREKVKDFARMQLSNPPAGPAGEEYRKKYPCPPYK 150
Query: 144 LVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPV 203
+V+LDEAD+MT+DAQ ALRR +E Y+K TRF LICN V +II L SRC++FRF L+
Sbjct: 151 IVVLDEADSMTQDAQSALRRTMETYSKITRFCLICNYVTRIIDPLASRCSKFRFKSLDEA 210
Query: 204 HVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQS 245
+ +RL+ + + E + + +G + L+R GD+RKA+ LQS
Sbjct: 211 NAGKRLEDIAKLENVRLQDGVIETLLRCSEGDLRKAITFLQS 252
>gi|66513962|ref|XP_623937.1| PREDICTED: replication factor C subunit 2 [Apis mellifera]
Length = 350
Score = 208 bits (529), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 114/344 (33%), Positives = 184/344 (53%), Gaps = 3/344 (0%)
Query: 11 DFDEDENQNLKPKDNGKNVIVSGTPPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTS 70
D D+ + + P +G NV + PW+EKYRPQ +D+ + D V +
Sbjct: 6 DIDDSMDIEILPSTSGYNVKNKEKDKKLDHLPWIEKYRPQVFSDIVGNEDTVSRLSVFAQ 65
Query: 71 ENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFAS 130
+ P++++ GPPG GKT+TIL +AR L G + +LELNAS+DRGIDVVR +I+ FA
Sbjct: 66 QGNCPNIIIAGPPGVGKTTTILCLARILLGPIFKEAVLELNASNDRGIDVVRNKIKMFA- 124
Query: 131 TQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQS 190
Q K K+++LDEAD+MT AQ ALRR +E Y+ TRFAL CN +KII +QS
Sbjct: 125 -QKRVNLPKGKHKIIILDEADSMTAGAQQALRRTMEIYSNTTRFALACNSSDKIIEPIQS 183
Query: 191 RCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMAS 250
RC R+ L + ++ + + E + T+ GL A+V GDMR+ALN LQSTH
Sbjct: 184 RCAMLRYGKLSDAQILAKIIDICKKEDVSHTDDGLEAIVFTAQGDMRQALNNLQSTHNGF 243
Query: 251 QQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMF 310
+ E V+ P P ++++ + + + ++ + E + G + DI+ +
Sbjct: 244 NHVNSENVFKVCDEPHPLLVKEMLEFCTEGNISKAYG-VMEHLWKMGYSAEDIINNIFKV 302
Query: 311 VFKIKMPSDVRVRLMNDLADIEYRLSFGCNDKLQLGSIISTFTQ 354
+ + +++ + ++ + G N LQ+ S+++ +
Sbjct: 303 AKNLLIDETLKLDFVKEIGITHLGIVDGVNSLLQMNSLLARLCK 346
>gi|440632243|gb|ELR02162.1| replication factor C subunit 2/4 [Geomyces destructans 20631-21]
Length = 357
Score = 208 bits (529), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 120/320 (37%), Positives = 185/320 (57%), Gaps = 16/320 (5%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP L DV + + ++ + + E +PH+++ G PG GKT+++L +AR+L G
Sbjct: 34 PWVEKYRPVFLDDVVGNVETIERLKIIAREGNMPHMIISGMPGIGKTTSVLCLARQLLGE 93
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQ-SFSFGVKASVKLVLLDEADAMTKDAQFA 160
Y +LELNASD+RGIDVVR +I+ FA + + G + KLV+LDEAD+MT AQ A
Sbjct: 94 SYKEAVLELNASDERGIDVVRNRIKGFAQKKVTLPQGRQ---KLVILDEADSMTSGAQQA 150
Query: 161 LRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDV 220
LRR +E Y+ TRFA CNQ NKII LQSRC R+A L V +RL +IEAE ++
Sbjct: 151 LRRTMEIYSSTTRFAFACNQSNKIIEPLQSRCAILRYARLTDAQVVKRLLQIIEAENVEY 210
Query: 221 TEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQI---SYWL 277
++ GLAALV GDMR+A+N QST ++ + V+ +P P ++ + Y
Sbjct: 211 SDDGLAALVFSAEGDMRQAINNCQSTWAGFGFVSGDNVFKVVDSPHPIKVQAMLKSCYEG 270
Query: 278 LNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPS---DVRVRLMNDLADIEYR 334
++ +S K + ++ G + DI+ TMF +P+ ++ + ++ +
Sbjct: 271 KVDAALESLKELWDL----GYSSHDIIS--TMFRVTKTIPTLSEHSKLEFIKEIGFTHMK 324
Query: 335 LSFGCNDKLQLGSIISTFTQ 354
+ G LQL + ++ ++
Sbjct: 325 ILEGVQTLLQLSACVARLSK 344
>gi|225459625|ref|XP_002285874.1| PREDICTED: replication factor C subunit 4 isoform 1 [Vitis
vinifera]
gi|302141781|emb|CBI18984.3| unnamed protein product [Vitis vinifera]
Length = 341
Score = 208 bits (529), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 114/322 (35%), Positives = 180/322 (55%), Gaps = 6/322 (1%)
Query: 40 ASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLY 99
+ PWVEKYRP+ + DVA ++V + PH+L YGPPGTGKT+T LA+A +L+
Sbjct: 8 SQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETTNCPHMLFYGPPGTGKTTTALAIAHQLF 67
Query: 100 GAQ-YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASV-----KLVLLDEADAM 153
G + Y + +LELNASDDRGI+VVR +I+DFA+ S + K+++LDEAD+M
Sbjct: 68 GPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSGHRQGGYPCPPYKIIILDEADSM 127
Query: 154 TKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVI 213
T+DAQ ALRR +E Y+K TRF ICN +++II L SRC +FRF PL ++ R+ H+
Sbjct: 128 TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEIMSSRILHIC 187
Query: 214 EAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQI 273
+ E L++ L+ L + GD+R+A+ LQ I + +P+ + Q
Sbjct: 188 KEEELNLDSEALSTLSSISQGDLRRAITYLQGAARLFGSIISSKDLISVSGVVPQHVVQA 247
Query: 274 SYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEY 333
+ DS + + +G + ++ ++ V + + + + R+ LA+ +
Sbjct: 248 LFAACKSGDFDSANKEVNNVIAEGYPVSQMLYQLFDVVVEADISDEQKARICKRLAEADK 307
Query: 334 RLSFGCNDKLQLGSIISTFTQA 355
L G ++ LQL + S +A
Sbjct: 308 CLVDGADEYLQLLDVASNAMRA 329
>gi|164658640|ref|XP_001730445.1| hypothetical protein MGL_2241 [Malassezia globosa CBS 7966]
gi|159104341|gb|EDP43231.1| hypothetical protein MGL_2241 [Malassezia globosa CBS 7966]
Length = 353
Score = 208 bits (529), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 100/211 (47%), Positives = 145/211 (68%), Gaps = 4/211 (1%)
Query: 39 KASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKL 98
++ PWVE+YRP+S+ +VA+ + V+ + + + LPH+L YGPPGTGKTSTILA+AR+L
Sbjct: 5 ESQPWVERYRPKSIDEVASQQHAVNVLRKALTSANLPHMLFYGPPGTGKTSTILALARQL 64
Query: 99 YGAQ-YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGV---KASVKLVLLDEADAMT 154
YG + + +LELNASD+RGI VVR +I+ FA + K+V+LDEAD+MT
Sbjct: 65 YGPELMRSRVLELNASDERGISVVRDKIKSFARAAVSAPNPDYPSPPYKIVILDEADSMT 124
Query: 155 KDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIE 214
+DAQ ALRR++E+Y++ TRF L+CN V +II + SRC++FRF PL+ RL H+ +
Sbjct: 125 QDAQGALRRIMEQYSRITRFCLVCNYVTRIIEPVASRCSKFRFRPLDVASTEARLLHIAQ 184
Query: 215 AEGLDVTEGGLAALVRLCNGDMRKALNILQS 245
EGL + + L+R GDMR+++ LQS
Sbjct: 185 MEGLRLNPDLVPVLIRSSEGDMRRSITYLQS 215
>gi|254568858|ref|XP_002491539.1| Subunit of heteropentameric Replication factor C (RF-C)
[Komagataella pastoris GS115]
gi|238031336|emb|CAY69259.1| Subunit of heteropentameric Replication factor C (RF-C)
[Komagataella pastoris GS115]
gi|328351952|emb|CCA38351.1| Replication factor C subunit 2 [Komagataella pastoris CBS 7435]
Length = 324
Score = 208 bits (529), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 99/216 (45%), Positives = 149/216 (68%), Gaps = 8/216 (3%)
Query: 40 ASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLY 99
++PWVEKYRP+ L +V+A +++ + +PHLL YGPPGTGKTSTILA+AR+L+
Sbjct: 2 STPWVEKYRPKKLDEVSAQSNVIRVLSNQLKSANMPHLLFYGPPGTGKTSTILAMARELF 61
Query: 100 GAQY-HNMILELNASDDRGIDVVRQQIQDFA--STQSFSFGVKASV-----KLVLLDEAD 151
G Q + +LELNASD+RGI +VR ++++FA S + + K + KL++LDEAD
Sbjct: 62 GPQLMKSRVLELNASDERGISIVRDKVKNFARLSVTNPTPEDKENYPCPPYKLIILDEAD 121
Query: 152 AMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKH 211
+MT DAQ ALRR++E Y+ TRF +ICN + +II + SRC++FRF+PL + LK
Sbjct: 122 SMTFDAQSALRRIMENYSHITRFCIICNYITRIIDPITSRCSKFRFSPLNSANSLATLKM 181
Query: 212 VIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTH 247
+ ++E LD+ + L ++ + NGD+RK++N LQ+ H
Sbjct: 182 ISQSEELDIDDDSLTQILDISNGDLRKSINFLQTGH 217
>gi|393244589|gb|EJD52101.1| replication factor C subunit 4 [Auricularia delicata TFB-10046 SS5]
Length = 340
Score = 207 bits (528), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 119/316 (37%), Positives = 179/316 (56%), Gaps = 8/316 (2%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP L DV ++D +D + + E PH+++ G PG GKT++I +A +L G
Sbjct: 20 PWVEKYRPLKLDDVVGNKDTIDRLKVIAREGNCPHIIISGLPGIGKTTSIHCLAHELLGD 79
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFAL 161
Y +LELNASD+RGIDVVR +I+ FA Q K K V+LDEAD+MT AQ AL
Sbjct: 80 AYKEGVLELNASDERGIDVVRNKIKMFA--QKKVTLPKGRHKFVILDEADSMTSGAQQAL 137
Query: 162 RRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVT 221
RR +E Y+ TRFAL CNQ NKII +QSRC R+A L + RL + + E +
Sbjct: 138 RRTMEIYSNTTRFALACNQSNKIIEPIQSRCAILRYAKLRNEEIVARLLEICKEESVTYN 197
Query: 222 EGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNES 281
+ G+ ALV GDMR+A+N LQST + V+ P P ++++ +
Sbjct: 198 QDGIEALVFTAEGDMRQAINNLQSTFSGFGFVNAANVFKVCDQPHPTMVQKMMRSCKEGN 257
Query: 282 FADSFKRISEMKMRKGLALVDIVREVTMF-VFKI--KMPSDVRVRLMNDLADIEYRLSFG 338
D+ ++ + R+G + VDIV VT+F V K+ ++P +++ + ++ ++ G
Sbjct: 258 INDAMDHLTAL-WRQGYSAVDIV--VTIFRVVKVFDELPEYLKLEFIKEIGFTHMKILEG 314
Query: 339 CNDKLQLGSIISTFTQ 354
+QLG +++ +
Sbjct: 315 VGTLVQLGGLLARLCK 330
>gi|428671876|gb|EKX72791.1| replication factor C subunit 4, putative [Babesia equi]
Length = 324
Score = 207 bits (528), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 115/312 (36%), Positives = 184/312 (58%), Gaps = 3/312 (0%)
Query: 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 102
W+EKYRP SL ++ + +I + + E +P+LLL GPPGTGKT+++L +AR++ GAQ
Sbjct: 8 WIEKYRPGSLDEIIGNPEITKRLQYIAKEGNMPNLLLCGPPGTGKTTSVLCLAREMLGAQ 67
Query: 103 YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALR 162
+ + ++ELNASDDRG+DVVR+ I++FA K K+V+LDE D+MT+ AQ ALR
Sbjct: 68 FKSGVIELNASDDRGVDVVRESIKNFAKKSLILPPNKH--KIVILDEVDSMTEAAQQALR 125
Query: 163 RVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTE 222
R++E Y+ TRFAL CNQ KII +QSRC RF L+ V +RL + + E L T
Sbjct: 126 RIMEIYSNTTRFALACNQSTKIIEPIQSRCAVIRFTKLKDEQVLQRLMDICKLEDLKYTN 185
Query: 223 GGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESF 282
G+ AL+ +GD+R+A+N LQ+ IT+E V+ P P I+++ LN ++
Sbjct: 186 DGMEALLFSADGDLRRAVNNLQNVSAGFDLITKENVFKVCDIPSPDLIQKMLSDCLNGNW 245
Query: 283 ADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDK 342
+ ++ +E+ + G + +DI+ + + P V + + +A + G +
Sbjct: 246 RMAHEKAAEL-LELGHSPLDIIITMRSVLKSFNAPEHVLLEYIKGVALTHMTMVNGLITQ 304
Query: 343 LQLGSIISTFTQ 354
LQL +++ +
Sbjct: 305 LQLEKLLANLCR 316
>gi|402225443|gb|EJU05504.1| P-loop containing nucleoside triphosphate hydrolase protein
[Dacryopinax sp. DJM-731 SS1]
Length = 370
Score = 207 bits (528), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 108/254 (42%), Positives = 159/254 (62%), Gaps = 20/254 (7%)
Query: 37 DIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVAR 96
D PW+EKYRP+++ +++A V + + LPH+L YGPPGTGKTSTILA+AR
Sbjct: 22 DPSLQPWIEKYRPKTMEEISAQEHTVQVLKKTLGSANLPHMLFYGPPGTGKTSTILALAR 81
Query: 97 KLYGAQ-YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKAS-------VKLVLLD 148
+L+G + + + +LELNASD+RGI VVR++I++FA + +AS K+++LD
Sbjct: 82 QLFGPELFRSRVLELNASDERGITVVREKIKNFARQTPRAADDEASKGYPCPPYKIIILD 141
Query: 149 EADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTER 208
EAD+MT+DAQ ALRRV+E Y K TRF L+CN V +II L SRC++FRF L+ R
Sbjct: 142 EADSMTQDAQAALRRVMETYAKITRFCLVCNYVTRIIEPLASRCSKFRFHTLDASSNRAR 201
Query: 209 LKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPL-- 266
L+++ AE + VT ++ L+ GD+R+++ LQS H S T P
Sbjct: 202 LEYIATAEHVSVTPAVISTLISTSEGDLRRSITYLQSAHRLSAS---------TSPPTEI 252
Query: 267 -PKDIEQISYWLLN 279
P+DI++I+ + N
Sbjct: 253 QPRDIQEIAGVIPN 266
>gi|195491632|ref|XP_002093645.1| GE20646 [Drosophila yakuba]
gi|194179746|gb|EDW93357.1| GE20646 [Drosophila yakuba]
Length = 331
Score = 207 bits (528), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 114/309 (36%), Positives = 175/309 (56%), Gaps = 3/309 (0%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PW+EKYRP ++ + D V + ++ P++++ GPPG GKT+TI +AR L G
Sbjct: 17 PWIEKYRPAKFKEIVGNEDTVARLSVFATQGNAPNIIIAGPPGVGKTTTIQCLARILLGD 76
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFAL 161
Y +LELNAS++RGIDVVR +I+ FA Q + + K+V+LDEAD+MT+ AQ AL
Sbjct: 77 SYKEAVLELNASNERGIDVVRNKIKMFAQ-QKVTLP-RGRHKIVILDEADSMTEGAQQAL 134
Query: 162 RRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVT 221
RR +E Y+ TRFAL CN KII +QSRC RF L V +L V + E L+ T
Sbjct: 135 RRTMEIYSSTTRFALACNTSEKIIEPIQSRCAMLRFTKLSDAQVLAKLIEVAKWEKLNYT 194
Query: 222 EGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNES 281
E GL A+V GDMR+ LN LQST IT E V+ P PK +E++ +
Sbjct: 195 EDGLEAIVFTAQGDMRQGLNNLQSTAQGFGDITAENVFKVCDEPHPKLLEEMIHHCAAND 254
Query: 282 FADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCND 341
++K ++++ + G + DI+ + +I + +++ + ++ ++ G N
Sbjct: 255 IHKAYKILAKL-WKLGYSPEDIIGNIFRVCKRINIDEHMKLDFIREIGITHMKIVDGINS 313
Query: 342 KLQLGSIIS 350
LQL ++++
Sbjct: 314 LLQLTALLA 322
>gi|378755127|gb|EHY65154.1| hypothetical protein NERG_01600 [Nematocida sp. 1 ERTm2]
Length = 319
Score = 207 bits (528), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 113/310 (36%), Positives = 184/310 (59%), Gaps = 8/310 (2%)
Query: 45 EKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYH 104
EKYRP L ++ + I D + L +PH L +GPPGTGKT+ A+ R++ +
Sbjct: 11 EKYRPAYLRNLVGNVHITDGLQALVKSEDIPHFLFFGPPGTGKTTAAKAICREVLASPER 70
Query: 105 NMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRV 164
N ++ELNASD+RGI V+R++++ FAST FG+ +K+++LDEAD+MTK+AQ ALRR+
Sbjct: 71 N-VMELNASDERGIGVIREKVKVFAST----FGISCKMKIIILDEADSMTKEAQNALRRI 125
Query: 165 IEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGG 224
IE Y+KN RF +ICN KIIPA++SRC FRF P++P + +K ++ E T+
Sbjct: 126 IEIYSKNVRFIIICNYSTKIIPAIKSRCAPFRFGPVKPAEMHAFVKEIVAKEEGIATDDS 185
Query: 225 LAALVRLCNGDMRKALNILQSTHMAS-QQITEEAVYLCTGNPLPKDIEQISYWLLNESFA 283
+ + ++ GD+R+A+N++ + ++IT V P +I Q+ + E F
Sbjct: 186 IERICKIAQGDIRRAVNLVNGLLITEDREITCSRVNKHYKEVKPSEIRQVFRIMRTEDFE 245
Query: 284 DSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDKL 343
+ +K GL L +IV + V K ++ + + M+ L++IE+RL G ++ +
Sbjct: 246 TAKAEFRRIKTEFGLGLKEIVNAIAD-VLKEEITEE-KGHQMSYLSEIEHRLGRGASELV 303
Query: 344 QLGSIISTFT 353
Q ++IS F+
Sbjct: 304 QENALISYFS 313
>gi|426255304|ref|XP_004021294.1| PREDICTED: replication factor C subunit 2 [Ovis aries]
Length = 403
Score = 207 bits (528), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 116/319 (36%), Positives = 182/319 (57%), Gaps = 3/319 (0%)
Query: 44 VEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQY 103
VEKYRP L ++ + D V ++ E +P++++ GPPGTGKT++IL +AR L G
Sbjct: 88 VEKYRPVKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGPAL 147
Query: 104 HNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRR 163
+ +LELNAS+DRGIDVVR +I+ FA Q + K K+++LDEAD+MT AQ ALRR
Sbjct: 148 KDAVLELNASNDRGIDVVRNKIKMFAQ-QKVTLP-KGRHKIIILDEADSMTDGAQQALRR 205
Query: 164 VIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEG 223
+E Y+K TRFAL CN +KII +QSRC R+ L + RL VIE E + T+
Sbjct: 206 TMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQILARLLSVIEKEKVQYTDD 265
Query: 224 GLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESFA 283
GL A++ GDMR+ALN LQST+ I E V+ P P ++++ ++
Sbjct: 266 GLEAIIFTAQGDMRQALNNLQSTYSGFGFINSENVFKVCDEPHPLLVKEMIQHCVSADID 325
Query: 284 DSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDKL 343
+++K ++ + G + DI+ + +M +++ + ++ +++ G N L
Sbjct: 326 EAYKILAHL-WHLGYSPEDIISNIFRVCKTFQMAEYLKLEFIKEIGYTHMKIAEGVNSLL 384
Query: 344 QLGSIISTFTQARSAIVAA 362
Q+ +++ Q A VA+
Sbjct: 385 QMAGLLARLCQKTMAPVAS 403
>gi|194866271|ref|XP_001971841.1| GG14218 [Drosophila erecta]
gi|190653624|gb|EDV50867.1| GG14218 [Drosophila erecta]
Length = 331
Score = 207 bits (528), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 115/314 (36%), Positives = 176/314 (56%), Gaps = 3/314 (0%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PW+EKYRP ++ + D V + ++ P++++ GPPG GKT+TI +AR L G
Sbjct: 17 PWIEKYRPAKFKEIVGNEDTVARLSVFATQGNAPNIIIAGPPGVGKTTTIQCLARILLGD 76
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFAL 161
Y +LELNAS++RGIDVVR +I+ FA Q + + K+V+LDEAD+MT+ AQ AL
Sbjct: 77 SYKEAVLELNASNERGIDVVRNKIKMFAQ-QKVTLP-RGRHKIVILDEADSMTEGAQQAL 134
Query: 162 RRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVT 221
RR +E Y+ TRFAL CN KII +QSRC RF L V +L V + E L+ T
Sbjct: 135 RRTMEIYSSTTRFALACNTSEKIIEPIQSRCAMLRFTKLSDAQVLAKLIEVAKWEKLNYT 194
Query: 222 EGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNES 281
E GL A+V GDMR+ LN LQST IT E V+ P PK +E++ +
Sbjct: 195 EDGLEAIVFTAQGDMRQGLNNLQSTAQGFGDITAENVFKVCDEPHPKLLEEMIHHCAAND 254
Query: 282 FADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCND 341
++K ++++ + G + DI+ + +I + +++ + ++ ++ G N
Sbjct: 255 IHKAYKILAKL-WKLGYSPEDIIANIFRVCKRINIDEHLKLDFIREIGITHMKIIDGINS 313
Query: 342 KLQLGSIISTFTQA 355
LQL ++++ A
Sbjct: 314 LLQLTALLAKLCIA 327
>gi|114052583|ref|NP_001039359.1| replication factor C subunit 4 [Bos taurus]
gi|88954368|gb|AAI14042.1| Replication factor C (activator 1) 4, 37kDa [Bos taurus]
gi|296491286|tpg|DAA33349.1| TPA: replication factor C 4 [Bos taurus]
Length = 337
Score = 207 bits (528), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 128/331 (38%), Positives = 191/331 (57%), Gaps = 36/331 (10%)
Query: 32 SGTPPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTI 91
SG K PWVEKYRP+ + +VA ++V + + LP+LL YGPPGTGKTSTI
Sbjct: 29 SGENKKAKPVPWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTI 88
Query: 92 LAVARKLYGAQYHNM-ILELNASDDRGIDVVRQQIQDFAS---TQSFSFGVKAS-VKLVL 146
LA AR+L+G + + +LELNASD+RGI VVR+++++FA + S S G K+V+
Sbjct: 89 LAAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPPFKIVI 148
Query: 147 LDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVT 206
LDEAD+MT AQ ALRR +EK +K TRF LICN V++II L SRC++FRF PL
Sbjct: 149 LDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQ 208
Query: 207 ERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTH--MASQQITEEAVYLCTGN 264
+RL + + E + ++ G+A LV++ GD+RKA+ LQS +++TE+ + G+
Sbjct: 209 QRLLDIADKEHVKISNEGIAYLVQVSEGDLRKAITFLQSATRLTGGKEVTEKVITDIAGD 268
Query: 265 PLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRL 324
L+NE G A +V ++ V + SD + +
Sbjct: 269 ------------LINE----------------GHAATQLVNQLHDVVVENDNLSDKQKSI 300
Query: 325 MND-LADIEYRLSFGCNDKLQLGSIISTFTQ 354
+ + LA+++ L+ G ++ LQL S+ +T Q
Sbjct: 301 ITEKLAEVDKCLADGADEHLQLISLCATVMQ 331
>gi|302308854|ref|NP_985969.2| AFR422Wp [Ashbya gossypii ATCC 10895]
gi|299790827|gb|AAS53793.2| AFR422Wp [Ashbya gossypii ATCC 10895]
Length = 349
Score = 207 bits (528), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 106/245 (43%), Positives = 155/245 (63%), Gaps = 14/245 (5%)
Query: 39 KASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKL 98
++ PWVEKYRP+ L DVA+ + + R LPH+L YGPPGTGKTSTILA+ ++L
Sbjct: 20 ESKPWVEKYRPRKLDDVASQAHAITVLKRTLESANLPHMLFYGPPGTGKTSTILALTKEL 79
Query: 99 YGAQY-HNMILELNASDDRGIDVVRQQIQDFA-------STQSFSFGVKASVKLVLLDEA 150
+G + +LELNASD+RGI +VR+++++FA + + K+++LDEA
Sbjct: 80 FGPSLMKSRVLELNASDERGISIVREKVKNFARLTVTNPTKEDLEQYPCPPYKIIILDEA 139
Query: 151 DAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLK 210
D+MT DAQ ALRR +E Y+ TRF LICN V +II L SRC++FRF PL+ V+ RL+
Sbjct: 140 DSMTADAQSALRRTMETYSSVTRFCLICNYVTRIIDPLASRCSKFRFKPLDNVNALGRLE 199
Query: 211 HVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQ-----STHMASQQITEEAVYLCTGNP 265
+ + E L G L ++ + GD+RKA+ +LQ +++MA+++IT V G
Sbjct: 200 QIAQQEALSYEAGALEKVLHIAEGDLRKAITLLQTAAKMTSYMAAEKITIAQVEELAG-V 258
Query: 266 LPKDI 270
+P DI
Sbjct: 259 VPDDI 263
>gi|240280932|gb|EER44435.1| DNA replication factor C subunit Rfc3 [Ajellomyces capsulatus H143]
Length = 345
Score = 207 bits (528), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 120/273 (43%), Positives = 163/273 (59%), Gaps = 28/273 (10%)
Query: 105 NMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVK---------LVLLDEADAMTK 155
M+LELNASDDRGIDVVR QI+ FAST+ F V S K L++LDEADAMT
Sbjct: 3 QMVLELNASDDRGIDVVRDQIKTFASTKQI-FSVAPSTKSESTLGAFKLIILDEADAMTA 61
Query: 156 DAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEA 215
AQ ALRR++EKYT NTRF +I N +K+ PAL SRCTRFRF+PL+ + + V+E
Sbjct: 62 TAQMALRRIMEKYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKEEDIRVLVDQVVEK 121
Query: 216 EGLDVTEGGLAALVRLCNGDMRKALNILQSTHMAS-----------------QQITEEAV 258
E + + + +LV+L GDMR+ALN+LQ+ H +S + IT+E +
Sbjct: 122 ERVRIQPEAIDSLVQLSKGDMRRALNVLQACHASSIPLPMKNGPKAQPTSEHETITDETI 181
Query: 259 YLCTGNPLPKDIEQISYWLLNESFADS-FKRISEMKMRKGLALVDIVREVTMFVFKIKMP 317
Y C P P DI+ I LL S S I +K KGLAL DI+ ++ + +I++P
Sbjct: 182 YTCIAAPHPSDIKTIITTLLTTSDVTSCLNTIKTLKSTKGLALADILTSISTELQRIEVP 241
Query: 318 SDVRVRLMNDLADIEYRLSFGCNDKLQLGSIIS 350
+ R+ M LADIE+RL+ G + +Q G +S
Sbjct: 242 AATRIVWMEGLADIEWRLAGGGGEMVQTGKTLS 274
>gi|405961159|gb|EKC27004.1| Replication factor C subunit 4 [Crassostrea gigas]
Length = 343
Score = 207 bits (528), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 106/214 (49%), Positives = 147/214 (68%), Gaps = 9/214 (4%)
Query: 39 KASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKL 98
K PWVEK+RP+S+ DVA ++V + + + LP+LL YGPPGTGKTSTILA AR L
Sbjct: 34 KHVPWVEKFRPRSVDDVAYQDEVVAVLKKSLEGSDLPNLLFYGPPGTGKTSTILAAARSL 93
Query: 99 YGAQYHNM-ILELNASDDRGIDVVRQQIQDFASTQSFSFGVKAS------VKLVLLDEAD 151
+GA+ + +LELNASD+RGI+VVR++++ FA Q+ + G + K+++LDEAD
Sbjct: 94 FGAEMMKLRVLELNASDERGINVVREKVKKFA--QTTASGTRPDGKPCPPFKIIILDEAD 151
Query: 152 AMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKH 211
+MT AQ ALRR +EK +K+TRF LICN V++II + SRC +FRF PL +TERL+
Sbjct: 152 SMTSPAQAALRRTMEKESKSTRFCLICNYVSRIIEPIASRCAKFRFKPLADQILTERLQG 211
Query: 212 VIEAEGLDVTEGGLAALVRLCNGDMRKALNILQS 245
+ EAE + + + AL+ GDMRKA+ LQS
Sbjct: 212 ICEAEKISYDKESIKALIDSSEGDMRKAITYLQS 245
>gi|224013894|ref|XP_002296611.1| replication factor C 37 KD subunit [Thalassiosira pseudonana
CCMP1335]
gi|220968963|gb|EED87307.1| replication factor C 37 KD subunit [Thalassiosira pseudonana
CCMP1335]
Length = 336
Score = 207 bits (528), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 116/317 (36%), Positives = 179/317 (56%), Gaps = 9/317 (2%)
Query: 41 SPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYG 100
+PWVEKYRP++L DV + D + + + + +P+L+L GPPGTGKT+++ A+AR+L G
Sbjct: 18 TPWVEKYRPRNLDDVVGNEDTLVRLRAIAEDGNMPNLILCGPPGTGKTTSVHALARQLLG 77
Query: 101 AQYHNMILELNASDDRGIDVVRQQIQDFASTQ-SFSFGVKASVKLVLLDEADAMTKDAQF 159
+ Y N +LELNASD RGIDVVR +I+ FA + + G K+++LDEAD+MT AQ
Sbjct: 78 SAYSNGVLELNASDSRGIDVVRNKIKGFAMNKVNLPVGRH---KIIILDEADSMTSAAQQ 134
Query: 160 ALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLD 219
ALRR +E Y+ TRFAL CN KII +QSR R++ L + RLK V E +
Sbjct: 135 ALRRTMEIYSNTTRFALACNVSTKIIEPIQSRAAILRYSRLTDEQILNRLKFVCGEEEVS 194
Query: 220 VTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLN 279
+GGL A++ GDMR ALN +Q+T + +++ V+ P PK + I +
Sbjct: 195 YDDGGLEAIIFTAEGDMRNALNNIQATVSGFEHVSQTNVFKVCDQPHPKTVRGILDSCIK 254
Query: 280 ESFADSFKRISEMK--MRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSF 337
D+ K + E++ G + DI+ + +MP +++ + ++ R++
Sbjct: 255 ---GDTTKAVVEVRNLWNTGYSCSDIIGTLFKVAKSYEMPEALKLEYLREIGFTHMRIAD 311
Query: 338 GCNDKLQLGSIISTFTQ 354
G LQL + + Q
Sbjct: 312 GVGTLLQLLGLAARLCQ 328
>gi|156849229|ref|XP_001647495.1| hypothetical protein Kpol_1018p177 [Vanderwaltozyma polyspora DSM
70294]
gi|156118181|gb|EDO19637.1| hypothetical protein Kpol_1018p177 [Vanderwaltozyma polyspora DSM
70294]
Length = 350
Score = 207 bits (528), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 119/326 (36%), Positives = 189/326 (57%), Gaps = 17/326 (5%)
Query: 39 KASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKL 98
+ PWVEKYRP+ L DVAA V + R LPH+L YGPPGTGKTSTILA+ ++L
Sbjct: 20 QTQPWVEKYRPKKLDDVAAQEHAVTVLKRTLGSANLPHMLFYGPPGTGKTSTILALTKEL 79
Query: 99 YGAQY-HNMILELNASDDRGIDVVRQQIQDFA-------STQSFSFGVKASVKLVLLDEA 150
+G + +LELNASD+RGI +VR+++++FA S + K+++LDEA
Sbjct: 80 FGPNLIKSRVLELNASDERGISIVREKVKNFARLTVSKPSKEDLEKYPCPPYKIIILDEA 139
Query: 151 DAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLK 210
D+MT DAQ ALRR +E Y+ TRF LICN V +II L SRC++FRF L+ + +RLK
Sbjct: 140 DSMTADAQSALRRTMETYSNITRFCLICNYVTRIIDPLASRCSKFRFKALDETNALDRLK 199
Query: 211 HVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQ-----STHMASQQITEEAVYLCTG-N 264
V + E ++ E L ++ + +GD+R+A+ +LQ ST+ + +IT V G
Sbjct: 200 FVAQEENVNYKENVLEKILEISSGDLRRAITLLQSASKTSTYTENSEITVNLVEELAGVV 259
Query: 265 PLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREV-TMFVFKIKMPSDVRVR 323
P P E I +++ D+ + + +R G + +V ++ ++ +D + +
Sbjct: 260 PSPALNEIIE--VVSSKNIDAVTKYLDKFIRNGWSGTSVVNQLHNHYITSEDYSADFKNK 317
Query: 324 LMNDLADIEYRLSFGCNDKLQLGSII 349
+ L + + +L+ G N+ +QL +++
Sbjct: 318 VSWILFETDSKLNNGTNEHIQLLNLL 343
>gi|18859927|ref|NP_573245.1| CG8142 [Drosophila melanogaster]
gi|17862532|gb|AAL39743.1| LD35209p [Drosophila melanogaster]
gi|22832754|gb|AAF48768.2| CG8142 [Drosophila melanogaster]
Length = 353
Score = 207 bits (528), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 116/324 (35%), Positives = 189/324 (58%), Gaps = 23/324 (7%)
Query: 35 PPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAV 94
PP +PWVEKYRP+++ DV ++V + + LP++LLYGPPGTGKTSTILA
Sbjct: 28 PP----APWVEKYRPRNVDDVVEQSEVVAVLRKCVEGGDLPNMLLYGPPGTGKTSTILAA 83
Query: 95 ARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKAS----VKLVLLDEA 150
+R+++G + + ILELNASD+RGI+VVR +I++F+ + S K+++LDEA
Sbjct: 84 SRQIFGDMFKDRILELNASDERGINVVRTKIKNFSQLSASSVRPDGKPCPPFKIIILDEA 143
Query: 151 DAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLK 210
D+MT AQ ALRR +EK +++TRF LICN V++II + SRC++FRF L V +RLK
Sbjct: 144 DSMTHAAQSALRRTMEKESRSTRFCLICNYVSRIIVPITSRCSKFRFKALGEDKVIDRLK 203
Query: 211 HVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTH--MASQQITEEAVYLCTGNPLPK 268
++ E EG+ + + ++V++ GD+R+A+ LQS + + I A +P+
Sbjct: 204 YICEMEGVKIEDDAYKSIVKISGGDLRRAITTLQSCYRLKGPEHIINTADLFEMSGVIPE 263
Query: 269 DIEQISYWL---LNESFADSFKRISEMKMRKGLALVDIVREVTMFV-FKIKMPS---DVR 321
Y+L L + +++R+ + G + + + + FV F + P +
Sbjct: 264 ------YYLEDYLEVCRSGNYERLEQFVREIGFSAYSVGQMMEQFVEFIVHHPGLNDPQK 317
Query: 322 VRLMNDLADIEYRLSFGCNDKLQL 345
+ + L + +RL G ++ LQ+
Sbjct: 318 ATICDKLGECCFRLQDGGSEYLQI 341
>gi|156064851|ref|XP_001598347.1| conserved hypothetical protein [Sclerotinia sclerotiorum 1980]
gi|154691295|gb|EDN91033.1| conserved hypothetical protein [Sclerotinia sclerotiorum 1980
UF-70]
Length = 333
Score = 207 bits (528), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 107/233 (45%), Positives = 148/233 (63%), Gaps = 4/233 (1%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP L DV + + ++ + + + +PH+++ G PG GKT+++L +AR+L G
Sbjct: 34 PWVEKYRPVFLDDVVGNTETIERLKIIAKDGNMPHVIISGMPGIGKTTSVLCLARQLLGD 93
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQ-SFSFGVKASVKLVLLDEADAMTKDAQFA 160
Y +LELNASD+RGIDVVR +I+ FA + + G KLV+LDEAD+MT AQ A
Sbjct: 94 SYKEAVLELNASDERGIDVVRNRIKGFAQKKVTLPAGRH---KLVILDEADSMTSGAQQA 150
Query: 161 LRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDV 220
LRR +E Y+ TRFA CNQ NKII LQSRC R+A L V +RL +IEAE ++
Sbjct: 151 LRRTMEIYSSTTRFAFACNQSNKIIEPLQSRCAILRYARLTDAQVVKRLLQIIEAEKVEY 210
Query: 221 TEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQI 273
+E GLAALV GDMR+A+N LQST + + V+ +P P ++ +
Sbjct: 211 SEDGLAALVFSAEGDMRQAINNLQSTFAGFGFVNGDNVFKVVDSPHPIKVQAM 263
>gi|158285610|ref|XP_308395.4| AGAP007477-PA [Anopheles gambiae str. PEST]
gi|157020075|gb|EAA04621.4| AGAP007477-PA [Anopheles gambiae str. PEST]
Length = 341
Score = 207 bits (527), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 113/317 (35%), Positives = 178/317 (56%), Gaps = 3/317 (0%)
Query: 39 KASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKL 98
K+ PW+EKYRPQ ++ + + V + S+ P++++ GPPG GKT+TIL +AR L
Sbjct: 23 KSLPWIEKYRPQRFEEIVGNEETVARLGIFASQGNAPNIIIAGPPGVGKTTTILCLARIL 82
Query: 99 YGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQ 158
G + +LELNAS++RGIDVVR +I+ FA Q + + K+V+LDEAD+MT+ AQ
Sbjct: 83 LGPNFREAVLELNASNERGIDVVRSKIKMFAQ-QKVTL-PRGRHKIVILDEADSMTEGAQ 140
Query: 159 FALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGL 218
ALRR +E Y+ TRFAL CN KII +QSRC RF+ L V ++ + + E L
Sbjct: 141 QALRRTMEIYSNTTRFALACNTSEKIIEPIQSRCAMLRFSKLSDAQVLAKVVEICQHENL 200
Query: 219 DVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLL 278
E GL A+V GDMR+ALN LQST I+ V+ P P ++ + +
Sbjct: 201 SYDEDGLEAIVFTAQGDMRQALNNLQSTANGFGHISGANVFKVCDEPHPLLVQDMLQHCV 260
Query: 279 NESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFG 338
++K +S++ + G A DI+ V ++ M +++ + ++ + ++ G
Sbjct: 261 KGDIHKAYKIMSKL-WKLGYAAEDIIGNVFRVCRRMDMNEKLKLYFIREIGETHMKIVDG 319
Query: 339 CNDKLQLGSIISTFTQA 355
N LQ+ +++ +A
Sbjct: 320 LNSLLQMSGLLARMCEA 336
>gi|321261085|ref|XP_003195262.1| subunit of heteropentameric Replication factor C (RF-C); Rfc3p
[Cryptococcus gattii WM276]
gi|317461735|gb|ADV23475.1| Subunit of heteropentameric Replication factor C (RF-C), putative;
Rfc3p [Cryptococcus gattii WM276]
Length = 347
Score = 207 bits (527), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 120/319 (37%), Positives = 184/319 (57%), Gaps = 14/319 (4%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP L D+ + D V+ + + + LPH+++ G PG GKT++I +A L G
Sbjct: 27 PWVEKYRPVLLDDIVGNSDTVERLKVIAEDGNLPHIIISGMPGIGKTTSIHCLAHALLGE 86
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQ-SFSFGVKASVKLVLLDEADAMTKDAQFA 160
Y +LELNASD+RGIDVVR +I+ FA + + G K+++LDEAD+MT AQ A
Sbjct: 87 AYKEGVLELNASDERGIDVVRNKIKSFAQRKVTLPPGRH---KIIILDEADSMTAGAQQA 143
Query: 161 LRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDV 220
LRR +E Y+ TRFAL CN NKII +QSRC R++ L V +RLK + + E +
Sbjct: 144 LRRTMEIYSNTTRFALACNMSNKIIEPIQSRCAILRYSKLNDAEVLKRLKEICDMESVKY 203
Query: 221 TEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQI----SYW 276
+ GLAAL+ GDMR+A+N LQST ++++ V+ P P I Q+ Y
Sbjct: 204 NDEGLAALIFTAEGDMRQAINNLQSTWSGFGFVSQDNVFKICDQPHPIVIRQMIKDCQYG 263
Query: 277 LLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKI-KMPSDVRVRLMNDLADIEYRL 335
++E+ A R++ + +G + VDIV V V + ++P +++ + ++ R+
Sbjct: 264 KIDEALA----RVNAL-WDQGYSAVDIVVTVFRVVKGMEELPEYLKLEFIREIGWTHMRI 318
Query: 336 SFGCNDKLQLGSIISTFTQ 354
G +QLG++I+ +
Sbjct: 319 LEGVGTLVQLGAMIARLNK 337
>gi|396478172|ref|XP_003840471.1| similar to replication factor C subunit [Leptosphaeria maculans
JN3]
gi|312217043|emb|CBX96992.1| similar to replication factor C subunit [Leptosphaeria maculans
JN3]
Length = 350
Score = 207 bits (527), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 121/317 (38%), Positives = 178/317 (56%), Gaps = 10/317 (3%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP L DV + + ++ + + + +PH+++ G PG GKT++IL +AR+L G
Sbjct: 30 PWVEKYRPVYLDDVVGNTETIERLKIIAKDGNMPHMIISGMPGIGKTTSILCLARQLLGD 89
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQ-SFSFGVKASVKLVLLDEADAMTKDAQFA 160
Y +LELNASD+RGIDVVR +I+ FA + + G + KLV+LDEAD+MT AQ A
Sbjct: 90 AYKEAVLELNASDERGIDVVRNRIKGFAQKKVTLPPGRQ---KLVILDEADSMTSGAQQA 146
Query: 161 LRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDV 220
LRR +E Y+ TRFA CNQ NKII LQSRC R+A L V R+ + EAE +
Sbjct: 147 LRRTMEIYSSTTRFAFACNQSNKIIEPLQSRCAILRYARLTDAQVVRRVMQICEAEDVQY 206
Query: 221 TEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNE 280
++ G+AALV GDMR+A+N LQSTH + + V+ +P P ++ + +
Sbjct: 207 SDDGIAALVFSAEGDMRQAINNLQSTHAGFGFVNGDNVFRVVDSPHPIKVQAMIKSCHEQ 266
Query: 281 SFADSFKRISEMKMRKGLALVDIVREVTMF-VFKI--KMPSDVRVRLMNDLADIEYRLSF 337
D+ + E+ G + DI+ TMF V K + ++ + ++ R+
Sbjct: 267 RIDDALTALKEL-WDLGYSCHDIIS--TMFKVTKTIDTLSEHAKLEFIKEIGFTHMRILE 323
Query: 338 GCNDKLQLGSIISTFTQ 354
G LQL I+ +
Sbjct: 324 GVQTLLQLSGCIARLCK 340
>gi|403163867|ref|XP_003323926.2| replication factor C subunit 4 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375164648|gb|EFP79507.2| replication factor C subunit 4 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 342
Score = 207 bits (527), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 115/317 (36%), Positives = 182/317 (57%), Gaps = 6/317 (1%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP L D+ + D ++ + + + PH+++ G PG GKT++IL +A L G
Sbjct: 22 PWVEKYRPIILDDITGNTDTIERLKVIARDGNCPHIIISGAPGIGKTTSILCLAHALLGD 81
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQ-SFSFGVKASVKLVLLDEADAMTKDAQFA 160
Y +LELNASD+RGIDVVR +I+ FA+T+ + G K+++LDEAD+MT AQ A
Sbjct: 82 AYKEGVLELNASDERGIDVVRNKIKTFANTKVTLPAGRH---KIIILDEADSMTAGAQQA 138
Query: 161 LRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDV 220
LRR +E Y+ TRFAL CN +KII +QSRC R+ L+ V +RL + AE +
Sbjct: 139 LRRTMEIYSNTTRFALACNNSSKIIEPIQSRCAILRYGKLKDQEVLKRLVEIATAENVKY 198
Query: 221 TEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNE 280
E GLAAL+ GDMR+A+N LQST ++ E+V+ P P I+++
Sbjct: 199 AEDGLAALIFTSEGDMRQAINNLQSTVSGFGFVSAESVFKVCDQPHPVVIQKLLSACEKG 258
Query: 281 SFADSFKRISEMKMRKGLALVDIVREVTMFVFKI-KMPSDVRVRLMNDLADIEYRLSFGC 339
+D+ ++ + +G + +DIV + V + +M +++ + ++ R+ G
Sbjct: 259 DLSDALDQLEHL-WEQGYSALDIVGTLLKVVKSMDRMSEFLKLEFIKEIGFTHMRILEGV 317
Query: 340 NDKLQLGSIISTFTQAR 356
+ +QLG ++S + +
Sbjct: 318 STLVQLGGLLSRLCKLK 334
>gi|242042039|ref|XP_002468414.1| hypothetical protein SORBIDRAFT_01g045530 [Sorghum bicolor]
gi|241922268|gb|EER95412.1| hypothetical protein SORBIDRAFT_01g045530 [Sorghum bicolor]
Length = 339
Score = 207 bits (527), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 101/212 (47%), Positives = 142/212 (66%), Gaps = 7/212 (3%)
Query: 40 ASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLY 99
+ PWVEKYRP+ + DVA +++ + LPH+L YGPPGTGKT+T LA+A +LY
Sbjct: 8 SQPWVEKYRPRQVKDVAHQEEVIRVLTNTLQTADLPHMLFYGPPGTGKTTTALAIAYQLY 67
Query: 100 GAQ-YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASV-----KLVLLDEADAM 153
G + Y + +LELNASDDRGI+VVR +I+DFA+ + KA K+++LDEAD+M
Sbjct: 68 GPELYKSRVLELNASDDRGINVVRTKIKDFAAV-AVGTARKAGYPCPPYKIIILDEADSM 126
Query: 154 TKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVI 213
T+DAQ ALRR +E Y+K TRF ICN +++II L SRC +FRF PL ++ R+ H+
Sbjct: 127 TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRIMHIC 186
Query: 214 EAEGLDVTEGGLAALVRLCNGDMRKALNILQS 245
EGL++ L+ L + GD+R+A+ LQS
Sbjct: 187 NEEGLNLDAQALSTLSAISQGDLRRAITYLQS 218
>gi|58269654|ref|XP_571983.1| Activator 1 40 kDa subunit [Cryptococcus neoformans var. neoformans
JEC21]
gi|134114003|ref|XP_774249.1| hypothetical protein CNBG2300 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50256884|gb|EAL19602.1| hypothetical protein CNBG2300 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57228219|gb|AAW44676.1| Activator 1 40 kDa subunit, putative [Cryptococcus neoformans var.
neoformans JEC21]
Length = 347
Score = 207 bits (527), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 121/333 (36%), Positives = 187/333 (56%), Gaps = 10/333 (3%)
Query: 28 NVIVSGTPPDIKAS----PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPP 83
N ++S T A PWVEKYRP L D+ + D VD + + + +PH+++ G P
Sbjct: 9 NKLISATAKHTDAEGYEMPWVEKYRPVLLDDIVGNSDTVDRLKVIAEDGNVPHIIISGMP 68
Query: 84 GTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQ-SFSFGVKASV 142
G GKT++I +A L G Y +LELNASD+RGIDVVR +I+ FA + + G
Sbjct: 69 GIGKTTSIHCLAHALLGEAYKEGVLELNASDERGIDVVRNKIKSFAQRKVTLPPGRH--- 125
Query: 143 KLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEP 202
K+++LDEAD+MT AQ ALRR +E Y+ TRFAL CN NKII +QSRC R++ L
Sbjct: 126 KIIILDEADSMTAGAQQALRRTMEIYSNTTRFALACNMSNKIIEPIQSRCAILRYSKLND 185
Query: 203 VHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCT 262
V +RLK + + E + + GLAAL+ GDMR+A+N LQST + ++ V+
Sbjct: 186 AEVLKRLKEICDMESIKHNDEGLAALIFTAEGDMRQAINNLQSTWSGFGFVNQDNVFKIC 245
Query: 263 GNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKI-KMPSDVR 321
P P I Q+ + ++ R++ + +G + VDIV V V + ++P ++
Sbjct: 246 DQPHPIVIRQMIKDCQHGKIDEALARVNAL-WDQGYSAVDIVVTVFRVVKGMEELPEYLK 304
Query: 322 VRLMNDLADIEYRLSFGCNDKLQLGSIISTFTQ 354
+ + ++ R+ G +QLG++I+ ++
Sbjct: 305 LEFIREIGWTHMRVLEGVGTLVQLGAMIARLSK 337
>gi|425784288|gb|EKV22076.1| Protein transport membrane glycoprotein Sec20, putative
[Penicillium digitatum Pd1]
Length = 780
Score = 207 bits (527), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 104/215 (48%), Positives = 145/215 (67%), Gaps = 11/215 (5%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYG- 100
PWVEKYRP++L DVAA + R + LPH+L YGPPGTGKTSTILA+A+ L+G
Sbjct: 424 PWVEKYRPKTLDDVAAQDHTTKVLRRTLQASNLPHMLFYGPPGTGKTSTILALAKSLFGP 483
Query: 101 AQYHNMILELNASDDRGIDVVRQQIQDFASTQ-SFSFGVKAS---------VKLVLLDEA 150
A Y + ILELNASD+RGI +VR ++++FA Q S G+ A+ K+++LDEA
Sbjct: 484 ALYRSRILELNASDERGIGIVRDKVKNFARAQLSQPTGLDAAYRAQYPCPPFKIIILDEA 543
Query: 151 DAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLK 210
D+MT+DAQ ALRR +E Y++ TRF L+CN V +II L SRC++FRF L+ +R+
Sbjct: 544 DSMTQDAQSALRRTMETYSRITRFCLVCNYVTRIIEPLASRCSKFRFKMLDNNAAGDRIS 603
Query: 211 HVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQS 245
++ EGL + +G + L+R GD+R+A+ LQS
Sbjct: 604 NIAAQEGLRLEDGVVDTLIRCGEGDLRRAITYLQS 638
>gi|354544379|emb|CCE41102.1| hypothetical protein CPAR2_300910 [Candida parapsilosis]
Length = 357
Score = 207 bits (527), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 130/348 (37%), Positives = 196/348 (56%), Gaps = 50/348 (14%)
Query: 41 SPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYG 100
+PWVEKYRP++L D+A+ V +++ S LPH+L YGPPGTGKTSTILA+A++LYG
Sbjct: 14 TPWVEKYRPKNLNDIASQEHAVKVLEKQVSTGNLPHMLFYGPPGTGKTSTILALAKQLYG 73
Query: 101 AQ-YHNMILELNASDDRGIDVVRQQIQDFA-------STQSFSFGVKASVKLVLLDEADA 152
Y + +LELNASD+RGI +VRQ+I++FA + + K+++LDEAD+
Sbjct: 74 PNLYKSRVLELNASDERGISIVRQKIKNFARLTVSNPTPEDLKNYPCPPYKIIILDEADS 133
Query: 153 MTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHV 212
MT DAQ ALRR +E Y TRFAL+CN + +II L SRC++FRF L + RLK++
Sbjct: 134 MTNDAQSALRRTMETYANITRFALVCNYITRIIDPLASRCSKFRFKLLNSENSLNRLKYI 193
Query: 213 IEAE--GLDVTEGGLAAL---VRLCNGDMRKALNILQSTHMASQQ--------------- 252
E LD ++G A L +R+ NGD+RKA+ LQS S
Sbjct: 194 ANEEHLNLDKSQGEDAVLNEVLRISNGDLRKAITYLQSASKLSTSLQLEDDEDGDGKAGL 253
Query: 253 ITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKM--------RKGLA---LV 301
IT++++ G LP D L ++ + + +E K+ G + L+
Sbjct: 254 ITKQSIRETAG-VLPDD--------LIDNLVKTIRSKNEEKLVAVVNDVISSGWSAQQLI 304
Query: 302 DIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDKLQLGSII 349
D + EV V + S V+ ++ L D + +L+FG ++ +QL +++
Sbjct: 305 DQLHEV--LVMDDSINSLVKNQIALILFDTDKKLNFGTDEHIQLLNLV 350
>gi|452836376|gb|EME38320.1| hypothetical protein DOTSEDRAFT_161207 [Dothistroma septosporum
NZE10]
Length = 410
Score = 207 bits (527), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 105/222 (47%), Positives = 144/222 (64%), Gaps = 13/222 (5%)
Query: 37 DIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVAR 96
D + PWVEKYRP+SL DV A V + R LPH+L YGPPGTGKTST+LA+A+
Sbjct: 30 DNRLQPWVEKYRPKSLDDVTAQDHTVTVLRRTLQSANLPHMLFYGPPGTGKTSTVLALAK 89
Query: 97 KLYGAQ-YHNMILELNASDDRGIDVVRQQIQDFASTQ-----SFSFGVK-------ASVK 143
+LYG + +LELNASD+RGI +VR++++DFA Q S G + K
Sbjct: 90 QLYGPELMKTRVLELNASDERGISIVREKVKDFARMQLSNPPSGPAGEEYKKKYPCPPYK 149
Query: 144 LVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPV 203
+++LDEAD+MT+DAQ ALRR +E Y+K TRF L+CN V +II L SRC++FRF L+
Sbjct: 150 IIVLDEADSMTQDAQSALRRTMETYSKITRFCLVCNYVTRIIDPLASRCSKFRFKSLDEG 209
Query: 204 HVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQS 245
+ R++ + + EG+ + EG L+R GD+RKA+ LQS
Sbjct: 210 NAGRRIEDIAKLEGVKMEEGVTETLLRCSEGDLRKAITFLQS 251
>gi|71654812|ref|XP_816018.1| replication factor C, subunit 4 [Trypanosoma cruzi strain CL
Brener]
gi|70881118|gb|EAN94167.1| replication factor C, subunit 4, putative [Trypanosoma cruzi]
Length = 340
Score = 207 bits (527), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 123/332 (37%), Positives = 183/332 (55%), Gaps = 23/332 (6%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP+S+ D+ + D V + ++ E LP+LLL GPPGTGKT+++L +AR L
Sbjct: 7 PWVEKYRPKSMEDIVGNADAVSRLRVISKEGNLPNLLLCGPPGTGKTTSVLCLARTLLSD 66
Query: 102 Q-------YHNMILELNASDDRGIDVVRQQIQDFASTQ-SFSFGVKASV-------KLVL 146
Q +LELNASDDRG+DVVR++I+ FA T+ + V S K+V+
Sbjct: 67 QDGGDTTALKEAVLELNASDDRGLDVVREKIKLFAQTKKTLPQKVNESSQQKINLHKIVI 126
Query: 147 LDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVT 206
LDEAD+MT AQ ALRR +E ++ TRFA CN +KII +QSRC RF L +
Sbjct: 127 LDEADSMTPAAQQALRRTMELHSSTTRFAFACNNSHKIIEPIQSRCAVVRFKKLTHADIL 186
Query: 207 ERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPL 266
+RL ++I+ E + T+ GL AL+ L GD+R A+N LQ+TH + E V+ P
Sbjct: 187 KRLTYIIQQENVTYTDDGLEALLYLAEGDLRSAVNALQATHSGYGMVNAENVFKVCDQPH 246
Query: 267 PKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVR----- 321
P +E I L + S + + + +G A D+ ++ F + P R
Sbjct: 247 PLLVESIMDGCLQKKDLPSAHKELQRLLGRGYAASDV---ISTFFRTAQNPKLFRNEQQQ 303
Query: 322 VRLMNDLADIEYRLSFGCNDKLQLGSIISTFT 353
+ ++ + + R++ G LQL S+++ T
Sbjct: 304 LAVLRIIGETTMRIAEGVGTPLQLASMLARIT 335
>gi|224084964|ref|XP_002307456.1| predicted protein [Populus trichocarpa]
gi|222856905|gb|EEE94452.1| predicted protein [Populus trichocarpa]
Length = 342
Score = 207 bits (527), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 120/318 (37%), Positives = 190/318 (59%), Gaps = 13/318 (4%)
Query: 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 102
WVEKYRP+ + DVA ++V + PH+L YGPPGTGKT+T LA+A +LYG +
Sbjct: 11 WVEKYRPKQIKDVAHQDEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLYGPE 70
Query: 103 -YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASV------KLVLLDEADAMTK 155
Y + +LELNASDDRGI+VVR +I+DFA+ S G + V K+++LDEAD+MT+
Sbjct: 71 LYKSRVLELNASDDRGINVVRTKIKDFAAVAVGS-GQRQGVYPCPPYKIIILDEADSMTE 129
Query: 156 DAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEA 215
DAQ ALRR +E Y+K TRF ICN +++II L SRC +FRF PL ++ R+ H+
Sbjct: 130 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLPEEIMSNRILHICNE 189
Query: 216 EGLDVTEGGLAALVRLCNGDMRKALNILQ-STHMASQQITEEAVYLCTGNPLPKDIEQIS 274
EGL + L+ L + GD+R+A+ LQ + + I+ + + +G +P+++ +
Sbjct: 190 EGLTLDTEALSTLSSVSQGDLRRAITYLQGAARLFGSSISSKDLISVSG-AIPREVTEAI 248
Query: 275 YWLL-NESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSD-VRVRLMNDLADIE 332
Y N F + K ++++ + +G + ++ ++ V ++ SD + R+ LA +
Sbjct: 249 YAACKNGDFDLANKEVNDV-IAEGYPVSQMLAQLFEVVVEVDDISDEQKARICKSLATAD 307
Query: 333 YRLSFGCNDKLQLGSIIS 350
L G ++ LQL ++S
Sbjct: 308 KCLVDGADEYLQLLDVVS 325
>gi|425778430|gb|EKV16557.1| Protein transport membrane glycoprotein Sec20, putative
[Penicillium digitatum PHI26]
Length = 780
Score = 207 bits (527), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 104/215 (48%), Positives = 145/215 (67%), Gaps = 11/215 (5%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYG- 100
PWVEKYRP++L DVAA + R + LPH+L YGPPGTGKTSTILA+A+ L+G
Sbjct: 424 PWVEKYRPKTLDDVAAQDHTTKVLRRTLQASNLPHMLFYGPPGTGKTSTILALAKSLFGP 483
Query: 101 AQYHNMILELNASDDRGIDVVRQQIQDFASTQ-SFSFGVKAS---------VKLVLLDEA 150
A Y + ILELNASD+RGI +VR ++++FA Q S G+ A+ K+++LDEA
Sbjct: 484 ALYRSRILELNASDERGIGIVRDKVKNFARAQLSQPTGLDAAYRAQYPCPPFKIIILDEA 543
Query: 151 DAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLK 210
D+MT+DAQ ALRR +E Y++ TRF L+CN V +II L SRC++FRF L+ +R+
Sbjct: 544 DSMTQDAQSALRRTMETYSRITRFCLVCNYVTRIIEPLASRCSKFRFKMLDNNAAGDRIS 603
Query: 211 HVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQS 245
++ EGL + +G + L+R GD+R+A+ LQS
Sbjct: 604 NIAAQEGLRLEDGVVDTLIRCGEGDLRRAITYLQS 638
>gi|17647857|ref|NP_523915.1| replication factor C subunit 4 [Drosophila melanogaster]
gi|1703054|sp|P53034.1|RFC2_DROME RecName: Full=Replication factor C subunit 2; AltName:
Full=Activator 1 40 kDa subunit; Short=A1 40 kDa
subunit; AltName: Full=Activator 1 subunit 2; AltName:
Full=Replication factor C 40 kDa subunit; Short=RF-C 40
kDa subunit; Short=RFC40; AltName: Full=Replication
factor C subunit 4; Short=DmRfc4
gi|639708|gb|AAB60241.1| rfc40 [Drosophila melanogaster]
gi|7292439|gb|AAF47843.1| replication factor C subunit 4 [Drosophila melanogaster]
gi|20151645|gb|AAM11182.1| LD40483p [Drosophila melanogaster]
gi|220944360|gb|ACL84723.1| RfC40-PA [synthetic construct]
gi|220954324|gb|ACL89705.1| RfC40-PA [synthetic construct]
Length = 331
Score = 207 bits (527), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 115/314 (36%), Positives = 176/314 (56%), Gaps = 3/314 (0%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PW+EKYRP ++ + D V + ++ P++++ GPPG GKT+TI +AR L G
Sbjct: 17 PWIEKYRPVKFKEIVGNEDTVARLSVFATQGNAPNIIIAGPPGVGKTTTIQCLARILLGD 76
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFAL 161
Y +LELNAS++RGIDVVR +I+ FA Q + + K+V+LDEAD+MT+ AQ AL
Sbjct: 77 SYKEAVLELNASNERGIDVVRNKIKMFAQ-QKVTLP-RGRHKIVILDEADSMTEGAQQAL 134
Query: 162 RRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVT 221
RR +E Y+ TRFAL CN KII +QSRC RF L V +L V + E L+ T
Sbjct: 135 RRTMEIYSSTTRFALACNTSEKIIEPIQSRCAMLRFTKLSDAQVLAKLIEVAKWEKLNYT 194
Query: 222 EGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNES 281
E GL A+V GDMR+ LN LQST IT E V+ P PK +E++ +
Sbjct: 195 EDGLEAIVFTAQGDMRQGLNNLQSTAQGFGDITAENVFKVCDEPHPKLLEEMIHHCAAND 254
Query: 282 FADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCND 341
++K ++++ + G + DI+ + +I + +++ + ++ ++ G N
Sbjct: 255 IHKAYKILAKL-WKLGYSPEDIIANIFRVCKRINIDEHLKLDFIREIGITHMKIIDGINS 313
Query: 342 KLQLGSIISTFTQA 355
LQL ++++ A
Sbjct: 314 LLQLTALLAKLCIA 327
>gi|407399789|gb|EKF28431.1| replication factor C, subunit 4, putative [Trypanosoma cruzi
marinkellei]
Length = 340
Score = 207 bits (527), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 123/332 (37%), Positives = 183/332 (55%), Gaps = 23/332 (6%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP+S+ D+ + D V + ++ E LP+LLL GPPGTGKT+++L +AR L
Sbjct: 7 PWVEKYRPKSMEDIVGNADAVSRLRVISKEGNLPNLLLCGPPGTGKTTSVLCLARTLLSD 66
Query: 102 Q-------YHNMILELNASDDRGIDVVRQQIQDFASTQ-SFSFGVKASV-------KLVL 146
Q +LELNASDDRG+DVVR++I+ FA T+ + V S K+V+
Sbjct: 67 QDGGDTTALKEAVLELNASDDRGLDVVREKIKLFAQTKKTLPQKVNESSQQKMNLHKIVI 126
Query: 147 LDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVT 206
LDEAD+MT AQ ALRR +E ++ TRFA CN +KII +QSRC RF L +
Sbjct: 127 LDEADSMTPAAQQALRRTMELHSSTTRFAFACNNSHKIIEPIQSRCAVVRFKKLTHADIL 186
Query: 207 ERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPL 266
+RL ++I+ E + T+ GL AL+ L GD+R A+N LQ+TH + E V+ P
Sbjct: 187 KRLTYIIQQENVTYTDDGLEALLYLAEGDLRSAVNALQATHSGYGMVNAENVFKVCDQPH 246
Query: 267 PKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVR----- 321
P +E I L + S + + + +G A D+ ++ F + P R
Sbjct: 247 PLLVESIMDGCLQKKDLPSAHKELQRLLGRGYAASDV---ISTFFRTAQNPKLFRNEQQQ 303
Query: 322 VRLMNDLADIEYRLSFGCNDKLQLGSIISTFT 353
+ ++ + + R++ G LQL S+++ T
Sbjct: 304 LAVLRIIGETTMRIAEGVGTPLQLASMLARIT 335
>gi|237839531|ref|XP_002369063.1| replication factor C small subunit, putative [Toxoplasma gondii
ME49]
gi|211966727|gb|EEB01923.1| replication factor C small subunit, putative [Toxoplasma gondii
ME49]
gi|221483291|gb|EEE21610.1| replication factor C / DNA polymerase III gamma-tau subunit,
putative [Toxoplasma gondii GT1]
gi|221507780|gb|EEE33367.1| replication factor C / DNA polymerase III gamma-tau subunit,
putative [Toxoplasma gondii VEG]
Length = 357
Score = 207 bits (527), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 123/335 (36%), Positives = 193/335 (57%), Gaps = 25/335 (7%)
Query: 32 SGTPPDIKAS---PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKT 88
+ PP + ++ PWVEKYRP+ + D+A + + R+ +PHLL YGPPGTGKT
Sbjct: 19 TAAPPRVSSAQVVPWVEKYRPRRVEDMAHQVEPKKMLRRILETGNMPHLLFYGPPGTGKT 78
Query: 89 STILAVARKLYG-AQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASV----- 142
S LA+ R+L+G + N +LELNASDDRGI VVR++I+ + T +
Sbjct: 79 SAALALVRELFGREEAKNRLLELNASDDRGIKVVRERIKQYTKTNIAKGKINPETGREMP 138
Query: 143 --KLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPL 200
K+V+LDEAD MT+DAQ ALRR++E +++ TRF +ICN V++II + SRC+ RF P+
Sbjct: 139 TWKIVILDEADMMTQDAQSALRRIMEAFSRTTRFIIICNYVHRIIDPIFSRCSPHRFEPV 198
Query: 201 EPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQS-THMASQQITEEAVY 259
R++H+ ++EGL VT G + AL+R+ GD+R+A+ +LQS + + E+A+
Sbjct: 199 ARDAQEARIRHICDSEGLVVTSGAVDALLRISQGDLRRAVTLLQSAASIYDDNLHEDAIL 258
Query: 260 LCTGNPLPKDIEQISYWLLNESFADSFKRISEMK--MRKG----LALVDIVREVTMFVFK 313
G P + + L A + SE+ + +G L L +++R+V V
Sbjct: 259 EVAGQPPARIVTD----FLRACQASPSQASSEVDNVISQGWDVCLLLQEMIRQV---VVS 311
Query: 314 IKMPSDVRVRLMNDLADIEYRLSFGCNDKLQLGSI 348
+ + R++ND+A E+ + G + LQL S+
Sbjct: 312 PHLKDLQKARVINDIAQKEFAVFQGASPYLQLLSL 346
>gi|302421348|ref|XP_003008504.1| replication factor C subunit 4 [Verticillium albo-atrum VaMs.102]
gi|261351650|gb|EEY14078.1| replication factor C subunit 4 [Verticillium albo-atrum VaMs.102]
Length = 361
Score = 207 bits (527), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 106/230 (46%), Positives = 145/230 (63%), Gaps = 2/230 (0%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP L DV + + ++ + + E +PH+++ G PG GKT+++L +AR+L G
Sbjct: 38 PWVEKYRPVFLDDVVGNTETIERLKIIAKEGNMPHVIISGMPGIGKTTSVLCLARQLLGE 97
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFAL 161
Y +LELNASD+RGIDVVR +I+ FA Q + KLV+LDEAD+MT AQ AL
Sbjct: 98 SYKEAVLELNASDERGIDVVRNRIKGFA--QKKVTLPQGRHKLVILDEADSMTSGAQQAL 155
Query: 162 RRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVT 221
RR +E Y+ TRFA CNQ NKII LQSRC R+ L V +RL +IEAE + +
Sbjct: 156 RRTMEIYSNTTRFAFACNQSNKIIEPLQSRCAILRYGRLTDAQVVKRLMQIIEAESVQYS 215
Query: 222 EGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIE 271
+ GLAALV GDMR+A+N LQST ++ + V+ +P P ++
Sbjct: 216 DDGLAALVFSAEGDMRQAINNLQSTFSGFGFVSGDNVFKIVDSPHPVKVQ 265
>gi|156088043|ref|XP_001611428.1| hypothetical protein [Babesia bovis T2Bo]
gi|154798682|gb|EDO07860.1| conserved hypothetical protein [Babesia bovis]
Length = 336
Score = 207 bits (527), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 121/324 (37%), Positives = 188/324 (58%), Gaps = 27/324 (8%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP SL D+ H + + T+ + +PH++ +GPPGTGKTS LA+AR++YG
Sbjct: 6 PWVEKYRPASLDDIVFHTNAMTTMRHIVESYDMPHMIFHGPPGTGKTSAALAIARQIYGP 65
Query: 102 Q-YHNMILELNASDDRGIDVVRQQIQDFA---------STQSFSFGVKASVKLVLLDEAD 151
+ +LELNASD+RGI+VVR++I+ + +TQ+ V + K+++LDEAD
Sbjct: 66 EGMKERVLELNASDERGINVVRERIKTYTRLNISSNRVNTQTGR--VMPNFKMIILDEAD 123
Query: 152 AMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKH 211
+T DAQ ALRR+IE ++ +RF LICN V+KII + SRC+ F F P+ ERL++
Sbjct: 124 MITPDAQAALRRIIENFSNISRFILICNYVHKIIGPIYSRCSAFHFKPISQDAQIERLRY 183
Query: 212 VIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIE 271
+ AE L+ + L L ++ GDMR+++ ILQST ++TEEAV +G P PK+I
Sbjct: 184 ICTAESLEYEDHALDFLTQVSQGDMRRSVTILQSTASLFNKVTEEAVRNVSGYP-PKEI- 241
Query: 272 QISYWLLNESFA------DSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDV-RVRL 324
+NE FA + + + + G + + ++++ +V +DV + +
Sbjct: 242 ------VNEIFATCKGTTQDVEELCKKIIYDGWEVATLFQQISEYVVNSASLTDVQKATI 295
Query: 325 MNDLADIEYRLSFGCNDKLQLGSI 348
+L+ E L G QL S+
Sbjct: 296 TIELSGRELALIQGGLQYFQLASL 319
>gi|346974683|gb|EGY18135.1| replication factor C subunit 4 [Verticillium dahliae VdLs.17]
Length = 361
Score = 207 bits (527), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 106/230 (46%), Positives = 145/230 (63%), Gaps = 2/230 (0%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP L DV + + ++ + + E +PH+++ G PG GKT+++L +AR+L G
Sbjct: 38 PWVEKYRPVFLDDVVGNTETIERLKIIAKEGNMPHVIISGMPGIGKTTSVLCLARQLLGE 97
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFAL 161
Y +LELNASD+RGIDVVR +I+ FA Q + KLV+LDEAD+MT AQ AL
Sbjct: 98 SYKEAVLELNASDERGIDVVRNRIKGFA--QKKVTLPQGRHKLVILDEADSMTSGAQQAL 155
Query: 162 RRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVT 221
RR +E Y+ TRFA CNQ NKII LQSRC R+ L V +RL +IEAE + +
Sbjct: 156 RRTMEIYSNTTRFAFACNQSNKIIEPLQSRCAILRYGRLTDAQVVKRLMQIIEAESVQYS 215
Query: 222 EGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIE 271
+ GLAALV GDMR+A+N LQST ++ + V+ +P P ++
Sbjct: 216 DDGLAALVFSAEGDMRQAINNLQSTFSGFGFVSGDNVFKIVDSPHPVKVQ 265
>gi|195111460|ref|XP_002000296.1| GI10150 [Drosophila mojavensis]
gi|193916890|gb|EDW15757.1| GI10150 [Drosophila mojavensis]
Length = 354
Score = 207 bits (527), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 100/217 (46%), Positives = 145/217 (66%), Gaps = 8/217 (3%)
Query: 35 PPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAV 94
PP +PWVEKYRP+S+ DV ++V + + LP++LLYGPPGTGKTSTILA
Sbjct: 29 PP----APWVEKYRPRSVEDVVEQSEVVAVLRKCVEGADLPNMLLYGPPGTGKTSTILAA 84
Query: 95 ARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKA----SVKLVLLDEA 150
AR+++G Y + ILELNASD+RGI+VVR +I++FA + + K+++LDEA
Sbjct: 85 ARQIFGDMYRDRILELNASDERGINVVRTKIKNFAQLTASNVRPDGRPCPPFKIIVLDEA 144
Query: 151 DAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLK 210
D+MT AQ ALRR +EK +++TRF LICN V++II + SRC++FRF L + RLK
Sbjct: 145 DSMTHAAQAALRRTMEKESRSTRFCLICNYVSRIIVPITSRCSKFRFKALGETQIIARLK 204
Query: 211 HVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTH 247
H+ E +++ ++V++ GDMR+A+ LQS +
Sbjct: 205 HICMQENVNIDPDAYKSIVKISGGDMRRAITTLQSCY 241
>gi|18395021|ref|NP_564148.1| replication factor C subunit 2/4 [Arabidopsis thaliana]
gi|15810343|gb|AAL07059.1| putative replication factor [Arabidopsis thaliana]
gi|17065122|gb|AAL32715.1| Similar replication factor C, 37-kDa subunit [Arabidopsis thaliana]
gi|21536935|gb|AAM61276.1| putative replication factor [Arabidopsis thaliana]
gi|34098857|gb|AAQ56811.1| At1g21690 [Arabidopsis thaliana]
gi|332192018|gb|AEE30139.1| replication factor C subunit 2/4 [Arabidopsis thaliana]
Length = 339
Score = 207 bits (527), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 120/323 (37%), Positives = 188/323 (58%), Gaps = 14/323 (4%)
Query: 40 ASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLY 99
+ PWVEKYRP+ + DVA ++V + PH+L YGPPGTGKT+T LA+A +L+
Sbjct: 8 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLQTADCPHMLFYGPPGTGKTTTALAIAHQLF 67
Query: 100 GAQ-YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKA-----SVKLVLLDEADAM 153
G + Y + +LELNASDDRGI+VVR +I+DFA+ S ++ S K+++LDEAD+M
Sbjct: 68 GPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSNHRQSGYPCPSFKIIILDEADSM 127
Query: 154 TKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVI 213
T+DAQ ALRR +E Y+K TRF ICN +++II L SRC +FRF PL ++ R+ H+
Sbjct: 128 TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSNRILHIC 187
Query: 214 EAEGLDVTEGGLAALVRLCNGDMRKALNILQS-THMASQQITEEAVYLCTGNPLPKDIEQ 272
EGL + L+ L + GD+R+A+ LQS T + IT + +G + + +
Sbjct: 188 NEEGLSLDGEALSTLSSISQGDLRRAITYLQSATRLFGSTITSTDLLNVSGVVPLEVVNK 247
Query: 273 ISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDV----RVRLMNDL 328
+ + F + K + + + +G I+ + +F + SD+ + ++ L
Sbjct: 248 LFTACKSGDFDIANKEVDNI-VAEGYPASQIINQ--LFDIVAEADSDITDMQKAKICKCL 304
Query: 329 ADIEYRLSFGCNDKLQLGSIIST 351
A+ + RL G ++ LQL + S+
Sbjct: 305 AETDKRLVDGADEYLQLLDVASS 327
>gi|71654128|ref|XP_815689.1| replication factor C, subunit 2 [Trypanosoma cruzi strain CL
Brener]
gi|70880763|gb|EAN93838.1| replication factor C, subunit 2, putative [Trypanosoma cruzi]
Length = 347
Score = 207 bits (526), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 119/321 (37%), Positives = 190/321 (59%), Gaps = 16/321 (4%)
Query: 40 ASPWVEKYRPQSLADVAAHRDIVDTID-RLTSENRLPHLLLYGPPGTGKTSTILAVARKL 98
A+PWVEKYRP +L++V + + V + L S +PH L +GPPGTGKT+ ILAVAR+L
Sbjct: 18 ATPWVEKYRPMTLSEVKSQEEAVCALRASLQSSASMPHFLFHGPPGTGKTTAILAVAREL 77
Query: 99 YGAQY-HNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKAS----------VKLVLL 147
+G Y H+ + E+NASDDRGI V+R++++ FA T + G K KL++L
Sbjct: 78 FGPDYVHSRVREMNASDDRGIQVIREKVKVFAQTAVGNVGHKVQSDGQVYPVPQFKLIIL 137
Query: 148 DEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTE 207
DEADA+ DAQ ALRR++E ++ TRF ++CN V++II + SRC ++RF PL + +
Sbjct: 138 DEADALLPDAQAALRRMMEDFSDVTRFCILCNYVSRIIDPIASRCAKYRFKPLVRETLYD 197
Query: 208 RLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMA-SQQITEEAVYLCTGNPL 266
R++ + + E + V++ L AL R+ GD+R A+ LQ A +T+E +G+
Sbjct: 198 RIREIAKMEEITVSDASLEALDRVSGGDLRSAIMYLQYAQKAHGSDLTKENFLEVSGSVP 257
Query: 267 PKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMP--SDVRVRL 324
+ +E+ L+ + F D +++ + +G ++ ++ ++ P S VR R+
Sbjct: 258 MELLEKYLKALVTKDF-DGMYSLTKEIVGQGFPASQLLSQLHQYIVGSSCPLNSLVRSRI 316
Query: 325 MNDLADIEYRLSFGCNDKLQL 345
L D+E RLS G ++ LQL
Sbjct: 317 ALKLCDVERRLSDGGDEFLQL 337
>gi|147858312|emb|CAN83520.1| hypothetical protein VITISV_019805 [Vitis vinifera]
Length = 341
Score = 207 bits (526), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 114/322 (35%), Positives = 179/322 (55%), Gaps = 6/322 (1%)
Query: 40 ASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLY 99
+ PWVEKYRP+ + DVA ++V + PH+L YGPPGTGKT+T LA+A +L+
Sbjct: 8 SQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETTNCPHMLFYGPPGTGKTTTALAIAHQLF 67
Query: 100 GAQ-YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASV-----KLVLLDEADAM 153
G + Y + +LELNASDDRGI+VVR +I+DFA S + K+++LDEAD+M
Sbjct: 68 GPELYKSRVLELNASDDRGINVVRTKIKDFAXVAVGSGHRQGGYPCPPYKIIILDEADSM 127
Query: 154 TKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVI 213
T+DAQ ALRR +E Y+K TRF ICN +++II L SRC +FRF PL ++ R+ H+
Sbjct: 128 TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEIMSSRILHIC 187
Query: 214 EAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQI 273
+ E L++ L+ L + GD+R+A+ LQ I + +P+ + Q
Sbjct: 188 KEEELNLDSEALSTLSSISQGDLRRAITYLQGAARLFGSIISSKDLISVSGVVPQHVVQA 247
Query: 274 SYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEY 333
+ DS + + +G + ++ ++ V + + + + R+ LA+ +
Sbjct: 248 LFAACKSGDFDSANKEVNNVIAEGYPVSQMLYQLFDVVVEADISDEQKARICKRLAEADK 307
Query: 334 RLSFGCNDKLQLGSIISTFTQA 355
L G ++ LQL + S +A
Sbjct: 308 CLVDGADEYLQLLDVASNAMRA 329
>gi|258564276|ref|XP_002582883.1| activator 1 37 kDa subunit [Uncinocarpus reesii 1704]
gi|237908390|gb|EEP82791.1| activator 1 37 kDa subunit [Uncinocarpus reesii 1704]
Length = 395
Score = 207 bits (526), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 104/217 (47%), Positives = 148/217 (68%), Gaps = 13/217 (5%)
Query: 42 PWVEKY--RPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLY 99
PWVEKY RP++L DVAA V + R + LPH+L YGPPGTGKTSTILA+++ L+
Sbjct: 37 PWVEKYFSRPKTLDDVAAQDHTVTVLQRTLQASNLPHMLFYGPPGTGKTSTILALSKSLF 96
Query: 100 GAQ-YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKAS----------VKLVLLD 148
G + Y + ILELNASD+RGI++VR ++++FA TQ + S K+++LD
Sbjct: 97 GPKLYRSRILELNASDERGINIVRDKVKNFARTQLSHPPPQDSEYRKQYPCPPFKIIILD 156
Query: 149 EADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTER 208
EAD+MT+DAQ ALRR +E+++K TRF L+CN V +II L SRC++FRF L+ R
Sbjct: 157 EADSMTQDAQAALRRTMERFSKITRFCLVCNYVTRIIDPLASRCSKFRFKTLDGSAAGGR 216
Query: 209 LKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQS 245
L+ +++AE L V +G + AL+R GD+R+A+ +QS
Sbjct: 217 LEEIVKAEKLRVDDGVIDALIRCSEGDLRRAVTYMQS 253
>gi|196003908|ref|XP_002111821.1| hypothetical protein TRIADDRAFT_50137 [Trichoplax adhaerens]
gi|190585720|gb|EDV25788.1| hypothetical protein TRIADDRAFT_50137 [Trichoplax adhaerens]
Length = 373
Score = 207 bits (526), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 108/228 (47%), Positives = 144/228 (63%), Gaps = 12/228 (5%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP+S+ DVA ++V + + LP+ L YGPPGTGKTSTILA AR LYG+
Sbjct: 35 PWVEKYRPRSIDDVAHQDEVVSVLRKCLQGADLPNFLFYGPPGTGKTSTILAAARHLYGS 94
Query: 102 Q-YHNMILELNASDDRGIDVVRQQIQDFA----STQSFSFGVKASVKLVLLDEADAMTKD 156
Y + +LELNASDDRGI V+R++I+ FA + Q K+++LDEAD+MT
Sbjct: 95 DIYRSRVLELNASDDRGIQVIREKIKTFAQLSVANQRPDGTPCPPFKIIILDEADSMTHA 154
Query: 157 AQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAE 216
AQ ALRR +EKY+K TRF LICN V++II L SRC++FRF PL + L + E E
Sbjct: 155 AQAALRRTMEKYSKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLPENILLHHLSAISEKE 214
Query: 217 GLDVTEGGLAALVRLCNGDMRKALNILQST-------HMASQQITEEA 257
LD + L ++ + GDMRKA+ +QS + S++I E A
Sbjct: 215 NLDCDKQALRNIISISEGDMRKAITYIQSVSRLYNDKRITSERIIESA 262
>gi|195587662|ref|XP_002083580.1| GD13291 [Drosophila simulans]
gi|194195589|gb|EDX09165.1| GD13291 [Drosophila simulans]
Length = 331
Score = 207 bits (526), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 114/311 (36%), Positives = 175/311 (56%), Gaps = 3/311 (0%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PW+EKYRP ++ + D V + ++ P++++ GPPG GKT+TI +AR L G
Sbjct: 17 PWIEKYRPVKFKEIVGNEDTVARLSVFATQGNAPNIIIAGPPGVGKTTTIQCLARILLGD 76
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFAL 161
Y +LELNAS++RGIDVVR +I+ FA Q + + K+V+LDEAD+MT+ AQ AL
Sbjct: 77 SYKEAVLELNASNERGIDVVRNKIKMFAQ-QKVTLP-RGRHKIVILDEADSMTEGAQQAL 134
Query: 162 RRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVT 221
RR +E Y+ TRFAL CN KII +QSRC RF L V +L V + E L+ T
Sbjct: 135 RRTMEIYSSTTRFALACNTSEKIIEPIQSRCAMLRFTKLSDAQVLAKLIEVAKWEKLNYT 194
Query: 222 EGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNES 281
E GL A+V GDMR+ LN LQST IT E V+ P PK +E++ +
Sbjct: 195 EDGLEAIVFTAQGDMRQGLNNLQSTAQGFGDITAENVFKVCDEPHPKLLEEMIHHCAAND 254
Query: 282 FADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCND 341
++K ++++ + G + DI+ + +I + +++ + ++ ++ G N
Sbjct: 255 IHKAYKILAKL-WKLGYSPEDIIANIFRVCKRINIDEHLKLDFIREIGMTHMKIIDGINS 313
Query: 342 KLQLGSIISTF 352
LQL ++++
Sbjct: 314 LLQLTALLAKL 324
>gi|226294707|gb|EEH50127.1| replication factor C subunit 4 [Paracoccidioides brasiliensis Pb18]
Length = 352
Score = 207 bits (526), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 119/331 (35%), Positives = 189/331 (57%), Gaps = 17/331 (5%)
Query: 31 VSGTPPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTST 90
++G PPD + PWVEKYRP L D+ + + ++ + + + +PH+++ G PG GKT++
Sbjct: 19 LAGAPPDYEL-PWVEKYRPVYLDDIVGNTETIERLKIIARDGNMPHVIISGMPGIGKTTS 77
Query: 91 ILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQ-SFSFGVKASVKLVLLDE 149
IL +AR++ G Y +LELNASD+RGIDVVR +I+ FA + + G KLV+LDE
Sbjct: 78 ILCLARQMLGDSYKEAVLELNASDERGIDVVRNRIKGFAQKKVTLPPGRH---KLVILDE 134
Query: 150 ADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERL 209
AD+MT AQ ALRR +E Y+ TRFA CNQ NKII LQSRC R+A L + +RL
Sbjct: 135 ADSMTSGAQQALRRTMEIYSTTTRFAFACNQSNKIIEPLQSRCAILRYARLTDAQILKRL 194
Query: 210 KHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKD 269
+ +AE + +E G+AAL+ GDMR+A+N LQST ++ + V+ +P P
Sbjct: 195 TQICQAENVKHSEDGIAALIFSAEGDMRQAINNLQSTWAGFGFVSGDNVFRVVDSPHPIK 254
Query: 270 IEQI--SYWLLN-ESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPS---DVRVR 323
++ + + W N ++ D+ + ++ G + DI+ TMF +P+ ++
Sbjct: 255 VQAMIKACWEGNIDAALDTLNELWDL----GYSSHDIIS--TMFRVTKTIPTLSEHAKLE 308
Query: 324 LMNDLADIEYRLSFGCNDKLQLGSIISTFTQ 354
+ ++ R+ G +QL ++ +
Sbjct: 309 FIKEIGFAHMRILEGVQTLVQLSGCVAKLCR 339
>gi|323331653|gb|EGA73067.1| Rfc4p [Saccharomyces cerevisiae AWRI796]
Length = 264
Score = 207 bits (526), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 109/259 (42%), Positives = 160/259 (61%), Gaps = 5/259 (1%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRPQ L+D+ +++ +D + ++ + +PH+++ G PG GKT+++ +A +L G
Sbjct: 10 PWVEKYRPQVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLGR 69
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFAL 161
Y + +LELNASDDRGIDVVR QI+ FA + K K+V+LDEAD+MT AQ AL
Sbjct: 70 SYADGVLELNASDDRGIDVVRNQIKHFAQKKLHLPPGKH--KIVILDEADSMTAGAQQAL 127
Query: 162 RRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVT 221
RR +E Y+ +TRFA CNQ NKII LQSRC R++ L V +RL +I+ E + T
Sbjct: 128 RRTMELYSNSTRFAFACNQSNKIIEPLQSRCAILRYSKLSDEDVLKRLLQIIKLEDVKYT 187
Query: 222 EGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNES 281
GL A++ GDMR+A+N LQST + + V+ +P P ++++ LL +
Sbjct: 188 NDGLEAIIFTAEGDMRQAINNLQSTVAGHGLVNADNVFKIVDSPHPLIVKKM---LLASN 244
Query: 282 FADSFKRISEMKMRKGLAL 300
DS + + +KGL L
Sbjct: 245 LEDSIQILRTDLWKKGLFL 263
>gi|363750506|ref|XP_003645470.1| hypothetical protein Ecym_3150 [Eremothecium cymbalariae
DBVPG#7215]
gi|356889104|gb|AET38653.1| Hypothetical protein Ecym_3150 [Eremothecium cymbalariae
DBVPG#7215]
Length = 350
Score = 207 bits (526), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 120/331 (36%), Positives = 188/331 (56%), Gaps = 23/331 (6%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP+ L DV A V + + LPH+L YGPPGTGKTSTILA+ ++L+G
Sbjct: 24 PWVEKYRPKKLEDVTAQSHTVKVLKKTLESANLPHMLFYGPPGTGKTSTILALTKELFGP 83
Query: 102 QY-HNMILELNASDDRGIDVVRQQIQDFA-------STQSFSFGVKASVKLVLLDEADAM 153
+ +LELNASD+RGI +VR+++++FA S + K+++LDEAD+M
Sbjct: 84 ELMKTRVLELNASDERGISIVREKVKNFARLTVTTPSKEDLERHPCPPYKIIILDEADSM 143
Query: 154 TKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVI 213
T DAQ ALRR +E Y+ TRF LICN V +II L SRC++FRF PL+ + RL+++
Sbjct: 144 TADAQSALRRTMETYSNVTRFCLICNYVTRIIDPLASRCSKFRFKPLDNSNALTRLQYIA 203
Query: 214 EAEGLDVTEGGLAALVRLCNGDMRKALNILQST-----HMASQQITEEAVYLCTG-NPLP 267
E L + +G L ++ + GD+RK + +LQS ++ + +IT V G P P
Sbjct: 204 SEESLTLADGALDKILDISEGDLRKGITLLQSVAKAVAYLDNAEITTSQVEELAGVVPEP 263
Query: 268 KDIEQISYWLLNESFADSFKRISEMK---MRKGLALVDIVREV-TMFVFKIKMPSDVRVR 323
+E L+N+ + K I ++ G ++ ++ +V ++ ++ + +
Sbjct: 264 VLLE-----LVNKIESKDLKEIINYVNSFIKSGWCAASVISQLHDYYVKNDELDTEFKNK 318
Query: 324 LMNDLADIEYRLSFGCNDKLQLGSIISTFTQ 354
L L + + RL+ G N+ LQL ++ +Q
Sbjct: 319 LFLLLFETDSRLANGTNEHLQLLNLAVKISQ 349
>gi|189195266|ref|XP_001933971.1| replication factor C subunit 4 [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187979850|gb|EDU46476.1| replication factor C subunit 4 [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 353
Score = 207 bits (526), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 120/317 (37%), Positives = 179/317 (56%), Gaps = 10/317 (3%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP L DV + + ++ + + + +PH+++ G PG GKT++IL +AR+L G
Sbjct: 30 PWVEKYRPVYLDDVVGNTETIERLKIIAKDGNMPHMIISGMPGIGKTTSILCLARQLLGD 89
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQ-SFSFGVKASVKLVLLDEADAMTKDAQFA 160
Y +LELNASD+RGIDVVR +I+ FA + + + G + KLV+LDEAD+MT AQ A
Sbjct: 90 AYKEAVLELNASDERGIDVVRNRIKGFAQKKVTLAPGRQ---KLVILDEADSMTSGAQQA 146
Query: 161 LRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDV 220
LRR +E Y+ TRFA CNQ NKII LQSRC R+A L V R+ ++EAE +
Sbjct: 147 LRRTMEIYSATTRFAFACNQSNKIIEPLQSRCAILRYARLTDAQVVRRIMQIVEAEDVKY 206
Query: 221 TEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNE 280
++ G+AALV GDMR+A+N LQST + + V+ +P P ++ + +
Sbjct: 207 SDDGIAALVFSAEGDMRQAINNLQSTFAGFGFVNGDNVFKVVDSPHPIKVQAMIKACHEQ 266
Query: 281 SFADSFKRISEMKMRKGLALVDIVREVTMF-VFKI--KMPSDVRVRLMNDLADIEYRLSF 337
D+ + E+ G + DI+ TMF V K + ++ + ++ R+
Sbjct: 267 RIDDALASLKEL-WDLGYSCHDIIS--TMFKVTKTIDTLSEHAKLEFIKEIGFTHMRILE 323
Query: 338 GCNDKLQLGSIISTFTQ 354
G LQL I+ +
Sbjct: 324 GVQTLLQLSGCIARLCK 340
>gi|195337341|ref|XP_002035287.1| GM14011 [Drosophila sechellia]
gi|194128380|gb|EDW50423.1| GM14011 [Drosophila sechellia]
Length = 331
Score = 207 bits (526), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 114/311 (36%), Positives = 175/311 (56%), Gaps = 3/311 (0%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PW+EKYRP ++ + D V + ++ P++++ GPPG GKT+TI +AR L G
Sbjct: 17 PWIEKYRPVKFKEIVGNEDTVARLSVFATQGNAPNIIIAGPPGVGKTTTIQCLARILLGD 76
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFAL 161
Y +LELNAS++RGIDVVR +I+ FA Q + + K+V+LDEAD+MT+ AQ AL
Sbjct: 77 SYKEAVLELNASNERGIDVVRNKIKMFAQ-QKVTLP-RGRHKIVILDEADSMTEGAQQAL 134
Query: 162 RRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVT 221
RR +E Y+ TRFAL CN KII +QSRC RF L V +L V + E L+ T
Sbjct: 135 RRTMEIYSSTTRFALACNTSEKIIEPIQSRCAMLRFTKLSDAQVLAKLIEVAKWEKLNYT 194
Query: 222 EGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNES 281
E GL A+V GDMR+ LN LQST IT E V+ P PK +E++ +
Sbjct: 195 EDGLEAIVFTAQGDMRQGLNNLQSTAQGFGDITAENVFKVCDEPHPKLLEEMIHHCAAND 254
Query: 282 FADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCND 341
++K ++++ + G + DI+ + +I + +++ + ++ ++ G N
Sbjct: 255 IHKAYKILAKL-WKLGYSPEDIIANIFRVCKRINIDEHLKLDFIREIGMTHMKIIDGINS 313
Query: 342 KLQLGSIISTF 352
LQL ++++
Sbjct: 314 LLQLTALLAKL 324
>gi|112982853|ref|NP_001036917.1| replication factor C subunit 2 [Bombyx mori]
gi|54290087|dbj|BAD61055.1| RFC40 [Bombyx mori]
Length = 340
Score = 207 bits (526), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 121/354 (34%), Positives = 188/354 (53%), Gaps = 19/354 (5%)
Query: 10 MDFDEDENQNLKPKDNGKNVIVSGTPPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLT 69
M+ DE E + +KP + + PW+EKYRPQ+ D+ + D V +
Sbjct: 1 MEVDEPEKKQVKPSSSKSTNL-----------PWIEKYRPQTFDDIVGNEDTVSRLAVFA 49
Query: 70 SENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFA 129
P++++ GPPG GKT+TIL +AR L G + + +LELNAS+DRGIDVVR +I+ FA
Sbjct: 50 KTGNAPNIIIAGPPGVGKTTTILCLARVLLGVSFKDAVLELNASNDRGIDVVRNKIKMFA 109
Query: 130 STQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQ 189
Q + K+V+LDEAD+MT AQ ALRR +E Y+ TRFAL N KII +Q
Sbjct: 110 Q-QKVTLP-PGRHKIVILDEADSMTDGAQQALRRTMELYSSTTRFALAANNSEKIIEPIQ 167
Query: 190 SRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMA 249
SRC R++ L + ++ + E L TE G++A+V GD+R ALN LQST
Sbjct: 168 SRCAVLRYSRLSDAQILAKVIEICNKENLSYTEEGVSAVVFTAQGDLRSALNNLQSTAQG 227
Query: 250 SQQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTM 309
I+ + V+ P P + Q+ + +++K I+++ + G A DIV +
Sbjct: 228 FGHISPDNVFKVCDEPHPMVVRQMLEACTKQDIHEAYKVIAKL-CKIGYAAEDIVSNIFR 286
Query: 310 FVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDKLQLGSIISTFTQARSAIVAAA 363
+ + ++++ + ++ R++ G + LQL ++ AR VAA
Sbjct: 287 VCKTLDISEELKLAFIREIGLTHMRVADGLSSPLQLAGLL-----ARMCRVAAG 335
>gi|453082922|gb|EMF10969.1| P-loop containing nucleoside triphosphate hydrolase protein
[Mycosphaerella populorum SO2202]
Length = 406
Score = 207 bits (526), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 104/222 (46%), Positives = 147/222 (66%), Gaps = 10/222 (4%)
Query: 34 TPPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILA 93
T D + PWVEKYRP+SL D+AA V + R LPH+L YGPPGTGKTST+LA
Sbjct: 28 TKDDNRLQPWVEKYRPRSLDDIAAQDHTVTVLRRTLQSANLPHMLFYGPPGTGKTSTVLA 87
Query: 94 VARKLYGAQY-HNMILELNASDDRGIDVVRQQIQDFASTQ------SFSFGVK---ASVK 143
+A++LYG + + +LELNASD+RGI +VR++++DFA Q + + K K
Sbjct: 88 LAKQLYGPELVKSRVLELNASDERGISIVREKVKDFARMQLSNPPHAEEYRKKYPCPPYK 147
Query: 144 LVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPV 203
+++LDEAD+MT+DAQ ALRR +E Y+K TRF L+CN V +II L SRC++FRF L+
Sbjct: 148 IIILDEADSMTQDAQSALRRTMETYSKITRFCLVCNYVTRIIDPLASRCSKFRFKSLDEG 207
Query: 204 HVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQS 245
+ +R++ + E + + EG + L+R GD+RKA+ LQS
Sbjct: 208 NAGKRIEDIARLENVKLDEGVVETLLRCSEGDLRKAITFLQS 249
>gi|380016014|ref|XP_003691988.1| PREDICTED: replication factor C subunit 4-like [Apis florea]
Length = 357
Score = 207 bits (526), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 130/332 (39%), Positives = 192/332 (57%), Gaps = 25/332 (7%)
Query: 40 ASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLY 99
A PWVEKYRP+++ DV ++V+ + + P+LL YGPPGTGKTSTILA AR+L+
Sbjct: 31 APPWVEKYRPKNVKDVVEQTEVVEVLRQCLKGGDFPNLLFYGPPGTGKTSTILAAARQLF 90
Query: 100 GAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVK------ASVKLVLLDEADAM 153
G+ Y +LELNASD+RGI VVR++I+ FA Q + G++ K+++LDEAD+M
Sbjct: 91 GSLYKERVLELNASDERGIQVVREKIKSFA--QLTAGGIRDDGKSCPPFKIIILDEADSM 148
Query: 154 TKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVI 213
T AQ ALRR +EK + +TRF LICN V++II L SRCT+FRF PL + ERL+++
Sbjct: 149 TGAAQAALRRTMEKESHSTRFCLICNYVSRIIEPLTSRCTKFRFKPLGENKIIERLEYIC 208
Query: 214 EAEGLDVTEGGLAALVRLCNGDMRKALNILQS-THMASQ--QITEEAVYLCTGNPLPK-- 268
+ E L V + L +V + GD+R+A+ LQS T + + +IT + V G K
Sbjct: 209 KEEDLKVEKPVLLKIVEVSGGDLRRAITCLQSITKLKGKGIEITVDDVLEIIGIVPNKWL 268
Query: 269 ----DIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRL 324
DI + + E F D F M + A ++ +++ + +D + L
Sbjct: 269 DELIDICKTKDYTKAEEFVDQF-------MLEAYATSQVIEQLSERIIYSNELTDKQKAL 321
Query: 325 MND-LADIEYRLSFGCNDKLQLGSIISTFTQA 355
+ D L + YRL G N+ +QL +I +A
Sbjct: 322 IADTLGECNYRLLDGGNEYIQLMNICCGIIKA 353
>gi|242082974|ref|XP_002441912.1| hypothetical protein SORBIDRAFT_08g004780 [Sorghum bicolor]
gi|241942605|gb|EES15750.1| hypothetical protein SORBIDRAFT_08g004780 [Sorghum bicolor]
Length = 339
Score = 207 bits (526), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 119/324 (36%), Positives = 187/324 (57%), Gaps = 10/324 (3%)
Query: 40 ASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLY 99
+ PWVEKYRP+ + DVA +++ + LPH+L YGPPGTGKT+T LA+A +LY
Sbjct: 8 SQPWVEKYRPRQVKDVAHQEEVIRVLTNTLQTADLPHMLFYGPPGTGKTTTALAIAYQLY 67
Query: 100 GAQ-YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASV-----KLVLLDEADAM 153
G + Y + +LELNASDDRGI+VVR +I+DFA+ + KA K+++LDEAD+M
Sbjct: 68 GPELYKSRVLELNASDDRGINVVRTKIKDFAAV-AVGTARKAGYPCPPYKIIILDEADSM 126
Query: 154 TKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVI 213
T+DAQ ALRR +E Y+K TRF ICN +++II L SRC +FRF PL ++ R+ H+
Sbjct: 127 TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLVSRCAKFRFKPLSEEVMSNRIMHIC 186
Query: 214 EAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKD-IEQ 272
EGL++ L+ L + GD+R+A+ LQS + + +P+D ++
Sbjct: 187 NEEGLNLDAQALSTLSAISQGDLRRAITYLQSAARLFGSSISSSDLISVSGVIPEDVVKS 246
Query: 273 ISYWLLNESFADSFKRISEMKMRKGLALVDIVRE-VTMFVFKIKMPSDVRVRLMNDLADI 331
+ + F + K +S + + G + ++ + + + V +P D + R+ L +
Sbjct: 247 LLAACRSGEFDVANKEVSNI-IADGYPVSQLMAQFLDVIVGADDIPDDQKARICKKLGET 305
Query: 332 EYRLSFGCNDKLQLGSIISTFTQA 355
+ L G ++ LQL + S +A
Sbjct: 306 DKCLVDGADEYLQLLDVASETIRA 329
>gi|389627572|ref|XP_003711439.1| replication factor C subunit 4 [Magnaporthe oryzae 70-15]
gi|351643771|gb|EHA51632.1| replication factor C subunit 4 [Magnaporthe oryzae 70-15]
gi|440468926|gb|ELQ38053.1| replication factor C subunit 4 [Magnaporthe oryzae Y34]
gi|440480570|gb|ELQ61229.1| replication factor C subunit 4 [Magnaporthe oryzae P131]
Length = 358
Score = 207 bits (526), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 106/233 (45%), Positives = 150/233 (64%), Gaps = 4/233 (1%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP L DV + + ++ + + + +PH+++ G PG GKT+++L +AR+L G
Sbjct: 35 PWVEKYRPVFLDDVVGNTETIERLKIIAKDGNMPHVIISGMPGIGKTTSVLCLARQLLGD 94
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQ-SFSFGVKASVKLVLLDEADAMTKDAQFA 160
Y +LELNASD+RGIDVVR +I+ FA + + G KLV+LDEAD+MT AQ A
Sbjct: 95 SYKEAVLELNASDERGIDVVRNRIKGFAQKKVTLPPGRH---KLVILDEADSMTSGAQQA 151
Query: 161 LRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDV 220
LRR +E Y+ TRFA CNQ NKII LQSRC R+A L V +RL +IEAE ++
Sbjct: 152 LRRTMEIYSNTTRFAFACNQSNKIIEPLQSRCAILRYARLTDAQVVKRLLQIIEAEKVEY 211
Query: 221 TEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQI 273
++ GLAALV GDMR+A+N LQST+ ++ + V+ +P P ++ +
Sbjct: 212 SDDGLAALVFSAEGDMRQAINNLQSTYSGFGFVSGDNVFKVVDSPHPIKVQAM 264
>gi|427781667|gb|JAA56285.1| Putative replication factor c activator 1 2 [Rhipicephalus
pulchellus]
Length = 337
Score = 206 bits (525), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 113/310 (36%), Positives = 178/310 (57%), Gaps = 5/310 (1%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP ++ + + + ++ + E +P+++L GPPG GKT+TIL +AR L G
Sbjct: 20 PWVEKYRPVKFTEIVGNEETIARLEVFSREGNVPNVILSGPPGVGKTTTILCLARILLGP 79
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQ-SFSFGVKASVKLVLLDEADAMTKDAQFA 160
+ +LELNAS+DRGIDVVR +I+ FA + + G K+++LDEAD+MT+ AQ A
Sbjct: 80 AFREAVLELNASNDRGIDVVRNKIKMFAQKKVTLPPGKH---KIIILDEADSMTEGAQQA 136
Query: 161 LRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDV 220
LRR +E Y+K TRFAL CN +KII +QSRC RF+ L V +L V + E
Sbjct: 137 LRRTMEIYSKTTRFALACNTSDKIIEPIQSRCAVVRFSRLTDAQVLAKLLDVCQRENASY 196
Query: 221 TEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNE 280
+E GL ALV GDMR+A+N LQST + + + V+ P P+ I+ + + ++
Sbjct: 197 SEDGLEALVFTAQGDMRQAINNLQSTVVGFGHVNSQNVFKVCDEPHPEQIKDMLQYCVDG 256
Query: 281 SFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCN 340
+++K + M + G A DI+ V + D+++ + ++ + R G +
Sbjct: 257 QLDNAYKIMLHM-WKLGYAAEDIIVNVFRVCKSHDIREDIKLEFIKEIGYTQMRTLQGVH 315
Query: 341 DKLQLGSIIS 350
LQ+ +++
Sbjct: 316 SLLQMAGLLA 325
>gi|238494006|ref|XP_002378239.1| DNA replication factor C subunit Rfc4, putative [Aspergillus
flavus NRRL3357]
gi|220694889|gb|EED51232.1| DNA replication factor C subunit Rfc4, putative [Aspergillus flavus
NRRL3357]
Length = 295
Score = 206 bits (525), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 110/249 (44%), Positives = 156/249 (62%), Gaps = 5/249 (2%)
Query: 26 GKNVIVSGTPPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGT 85
G + +G P D + PWVEKYRP L DV + + ++ + + + +PH+++ G PG
Sbjct: 14 GLKPVTAGAPSDYEL-PWVEKYRPVFLDDVVGNTETIERLKIIAKDGNMPHVIISGMPGI 72
Query: 86 GKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQ-SFSFGVKASVKL 144
GKT++IL +AR+L G Y +LELNASD+RGIDVVR +I+ FA + + G K+
Sbjct: 73 GKTTSILCLARQLLGDAYKEAVLELNASDERGIDVVRNRIKGFAQKKVTLPPGRH---KI 129
Query: 145 VLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVH 204
V+LDEAD+MT AQ ALRR +E Y+ TRFA CNQ NKII +QSRC R+A L
Sbjct: 130 VILDEADSMTPGAQQALRRTMEIYSSTTRFAFACNQSNKIIEPIQSRCAILRYARLTDGQ 189
Query: 205 VTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGN 264
V +RLK V +AE ++ TE G+AALV GDMR+A+N LQST ++ + V+ +
Sbjct: 190 VVKRLKQVCDAEKVEHTEDGIAALVFSAEGDMRQAINNLQSTWSGFGFVSGDNVFRVVDS 249
Query: 265 PLPKDIEQI 273
P P ++ +
Sbjct: 250 PHPIKVQAM 258
>gi|195038153|ref|XP_001990525.1| GH18198 [Drosophila grimshawi]
gi|193894721|gb|EDV93587.1| GH18198 [Drosophila grimshawi]
Length = 356
Score = 206 bits (525), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 100/217 (46%), Positives = 144/217 (66%), Gaps = 8/217 (3%)
Query: 35 PPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAV 94
PP +PWVEKYRP+S+ DV ++V + + LP++LLYGPPGTGKTSTILA
Sbjct: 31 PP----APWVEKYRPRSVDDVVEQSEVVAVLRKCVEGADLPNMLLYGPPGTGKTSTILAA 86
Query: 95 ARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKA----SVKLVLLDEA 150
AR+++G Y ILELNASD+RGI+VVR +I++FA + S K+++LDEA
Sbjct: 87 ARQIFGDMYRERILELNASDERGINVVRTKIKNFAQLTASSVRPDGRPCPPFKIIVLDEA 146
Query: 151 DAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLK 210
D+MT AQ ALRR +EK +++TRF LICN V++II + SRC++FRF L + RL+
Sbjct: 147 DSMTHAAQAALRRTMEKESRSTRFCLICNYVSRIIVPITSRCSKFRFKALGETQIITRLQ 206
Query: 211 HVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTH 247
H+ + E + + ++V++ GDMR+A+ LQS +
Sbjct: 207 HICDLESVSIEPDAYQSIVKISGGDMRRAITTLQSCY 243
>gi|297845144|ref|XP_002890453.1| EMB1968 [Arabidopsis lyrata subsp. lyrata]
gi|297336295|gb|EFH66712.1| EMB1968 [Arabidopsis lyrata subsp. lyrata]
Length = 339
Score = 206 bits (525), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 120/322 (37%), Positives = 187/322 (58%), Gaps = 14/322 (4%)
Query: 40 ASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLY 99
+ PWVEKYRP+ + DVA ++V + PH+L YGPPGTGKT+T LA+A +L+
Sbjct: 8 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLQTADCPHMLFYGPPGTGKTTTALAIAHQLF 67
Query: 100 GAQ-YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKA-----SVKLVLLDEADAM 153
G + Y + +LELNASDDRGI+VVR +I+DFA+ S ++ S K+++LDEAD+M
Sbjct: 68 GPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSNHRQSGYPCPSFKIIILDEADSM 127
Query: 154 TKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVI 213
T+DAQ ALRR +E Y+K TRF ICN +++II L SRC +FRF PL ++ R+ H+
Sbjct: 128 TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSNRILHIC 187
Query: 214 EAEGLDVTEGGLAALVRLCNGDMRKALNILQS-THMASQQITEEAVYLCTGNPLPKDIEQ 272
EGL + L+ L + GD+R+A+ LQS T + IT + +G + + +
Sbjct: 188 NEEGLSLGGEALSTLSSISQGDLRRAITYLQSATRLFGSTITSTDLLDVSGVVPLEVVNK 247
Query: 273 ISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDV----RVRLMNDL 328
+ + F + K + + + +G I+ + +F + SD+ + ++ L
Sbjct: 248 LFTACKSGDFDIANKEVDNI-VAEGYPASQIINQ--LFDIVAEADSDITDMQKAKICKCL 304
Query: 329 ADIEYRLSFGCNDKLQLGSIIS 350
A+ + RL G ++ LQL + S
Sbjct: 305 AETDKRLVDGADEYLQLLDVAS 326
>gi|194750805|ref|XP_001957720.1| GF23886 [Drosophila ananassae]
gi|190625002|gb|EDV40526.1| GF23886 [Drosophila ananassae]
Length = 331
Score = 206 bits (525), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 115/314 (36%), Positives = 176/314 (56%), Gaps = 3/314 (0%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PW+EKYRP ++ + D V + ++ P++++ GPPG GKT+TI +AR L G
Sbjct: 17 PWIEKYRPVKFKEIVGNEDTVARLSVFATQGNAPNIIIAGPPGVGKTTTIQCLARILLGD 76
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFAL 161
Y +LELNAS++RGIDVVR +I+ FA Q + + K+V+LDEAD+MT+ AQ AL
Sbjct: 77 SYKEAVLELNASNERGIDVVRNKIKMFAQ-QKVTLP-RGRHKIVILDEADSMTEGAQQAL 134
Query: 162 RRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVT 221
RR +E Y+ TRFAL CN KII +QSRC RF L V +L V + E L T
Sbjct: 135 RRTMEIYSNTTRFALACNTSEKIIEPIQSRCAMLRFTKLSDSQVLAKLLEVSKWEKLHYT 194
Query: 222 EGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNES 281
+ GL A+V GDMR+ALN LQST IT E V+ P PK +E++ +
Sbjct: 195 DDGLEAIVFTAQGDMRQALNNLQSTAQGFGDITMENVFKVCDEPHPKLLEEMIHHCAAND 254
Query: 282 FADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCND 341
++K +S++ + G + DI+ + ++ + +++ + ++ ++ G N
Sbjct: 255 IHKAYKILSKL-WKLGYSPEDIIGNIFRVCKRVNIDEQLKLDFIREIGITHMKIVDGINS 313
Query: 342 KLQLGSIISTFTQA 355
LQL ++++ A
Sbjct: 314 LLQLTALLAKLCMA 327
>gi|154276822|ref|XP_001539256.1| activator 1 37 kDa subunit [Ajellomyces capsulatus NAm1]
gi|150414329|gb|EDN09694.1| activator 1 37 kDa subunit [Ajellomyces capsulatus NAm1]
Length = 354
Score = 206 bits (525), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 122/330 (36%), Positives = 184/330 (55%), Gaps = 15/330 (4%)
Query: 31 VSGTPPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTST 90
++G P D + PWVEKYRP L D+ + + ++ + + +PH+++ G PG GKT++
Sbjct: 19 LAGAPADYEL-PWVEKYRPVFLDDIVGNTETIERLKIIARNGNMPHVIISGMPGIGKTTS 77
Query: 91 ILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEA 150
IL +AR++ G Y +LELNASD+RGIDVVR +I+ FA Q + KLV+LDEA
Sbjct: 78 ILCLARQMLGNSYKEAVLELNASDERGIDVVRNRIKGFA--QKKVTLPQGRHKLVILDEA 135
Query: 151 DAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLK 210
D+MT AQ ALRR +E Y+ TRFA CNQ NKII LQSRC R+A L + +RL
Sbjct: 136 DSMTSGAQQALRRTMEIYSTTTRFAFACNQSNKIIEPLQSRCAILRYARLTDGQILKRLT 195
Query: 211 HVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDI 270
+ EAE + +E GL AL+ GDMR+A+N LQST ++ E V+ +P P +
Sbjct: 196 QICEAEKVKYSEDGLEALIFSAEGDMRQAINNLQSTWAGFGFVSGENVFRVVDSPHPVKV 255
Query: 271 EQI--SYWLLN-ESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPS---DVRVRL 324
+ + + W ++ DS + ++ G + DI+ TMF MP+ R+
Sbjct: 256 QAMIKACWEGKIDAALDSLNELWDL----GYSSHDIIS--TMFRVTKTMPTLSEHTRLEF 309
Query: 325 MNDLADIEYRLSFGCNDKLQLGSIISTFTQ 354
+ ++ R+ G +QL ++ +
Sbjct: 310 IKEIGFTHMRILEGVQTLVQLSGCLAKLCR 339
>gi|119598577|gb|EAW78171.1| replication factor C (activator 1) 4, 37kDa, isoform CRA_b [Homo
sapiens]
gi|194386378|dbj|BAG59753.1| unnamed protein product [Homo sapiens]
Length = 303
Score = 206 bits (525), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 109/234 (46%), Positives = 154/234 (65%), Gaps = 7/234 (2%)
Query: 32 SGTPPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTI 91
SG K PWVEKYRP+ + +VA ++V + + LP+LL YGPPGTGKTSTI
Sbjct: 29 SGENKKAKPVPWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTI 88
Query: 92 LAVARKLYGAQYHNM-ILELNASDDRGIDVVRQQIQDFAS---TQSFSFGVKAS-VKLVL 146
LA AR+L+G + + +LELNASD+RGI VVR+++++FA + S S G K+V+
Sbjct: 89 LAAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPPFKIVI 148
Query: 147 LDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVT 206
LDEAD+MT AQ ALRR +EK +K TRF LICN V++II L SRC++FRF PL
Sbjct: 149 LDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQ 208
Query: 207 ERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTH--MASQQITEEAV 258
+RL + + E + +++ G+A LV++ GD+RKA+ LQS ++ITE+ +
Sbjct: 209 QRLLDIAKKENVKISDEGIAYLVKVSEGDLRKAITFLQSATRLTGGKEITEKVI 262
>gi|334182756|ref|NP_001185061.1| replication factor C subunit 2/4 [Arabidopsis thaliana]
gi|332192021|gb|AEE30142.1| replication factor C subunit 2/4 [Arabidopsis thaliana]
Length = 341
Score = 206 bits (524), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 103/222 (46%), Positives = 145/222 (65%), Gaps = 7/222 (3%)
Query: 40 ASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLY 99
+ PWVEKYRP+ + DVA ++V + PH+L YGPPGTGKT+T LA+A +L+
Sbjct: 8 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLQTADCPHMLFYGPPGTGKTTTALAIAHQLF 67
Query: 100 GAQ-YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKA-----SVKLVLLDEADAM 153
G + Y + +LELNASDDRGI+VVR +I+DFA+ S ++ S K+++LDEAD+M
Sbjct: 68 GPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSNHRQSGYPCPSFKIIILDEADSM 127
Query: 154 TKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVI 213
T+DAQ ALRR +E Y+K TRF ICN +++II L SRC +FRF PL ++ R+ H+
Sbjct: 128 TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSNRILHIC 187
Query: 214 EAEGLDVTEGGLAALVRLCNGDMRKALNILQS-THMASQQIT 254
EGL + L+ L + GD+R+A+ LQS T + IT
Sbjct: 188 NEEGLSLDGEALSTLSSISQGDLRRAITYLQSATRLFGSTIT 229
>gi|328860731|gb|EGG09836.1| hypothetical protein MELLADRAFT_47409 [Melampsora larici-populina
98AG31]
Length = 382
Score = 206 bits (524), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 124/344 (36%), Positives = 192/344 (55%), Gaps = 36/344 (10%)
Query: 40 ASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLY 99
A PWVEKYRP+++ V + + LPH+L YGPPGTGKTSTILA+AR+L+
Sbjct: 29 ALPWVEKYRPKNIESVEGQDATTRVLAKTLHRADLPHMLFYGPPGTGKTSTILALARELF 88
Query: 100 GAQ-YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKA----SVKLVLLDEADAMT 154
G + + +LELNASD+RGI VVR +I+ FA S S A K+++LDEAD+MT
Sbjct: 89 GPELMKSRVLELNASDERGISVVRDKIKSFAKV-SISPATNAYPCPPFKIIILDEADSMT 147
Query: 155 KDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIE 214
+DAQ ALRR++E Y+K TRF LICN V +II + SRC++FRF PL RL +
Sbjct: 148 QDAQSALRRIMENYSKITRFCLICNYVTRIIEPIVSRCSKFRFTPLSSTDTLSRLNEICR 207
Query: 215 AEGLDVTEGGLAALVRLCNGDMRKALNILQSTHM---------ASQQITEEAVYLCTGNP 265
E + V E LA+L+++ +GD+R+++ LQS + +IT+E V G
Sbjct: 208 LENVKVAEPVLASLIKVSDGDLRRSITFLQSASKLRNGSSADDEAGEITQEDVEEIGGVI 267
Query: 266 LPKDIEQISYWLLNESFADS-----------------FKRIS---EMKMRKGLALVDIVR 305
+I ++ + + AD F++I+ E+ MR+G + V ++
Sbjct: 268 PDTEIRKLMKTMGIDVEADGDVTMADGNTRGKTRQTPFEKIAEAVELLMRQGYSSVQLIS 327
Query: 306 EV-TMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDKLQLGSI 348
++ + + +P + + L + + RL+ G ++LQ+ S+
Sbjct: 328 QLHDLILLDTLIPPRCKTMISIALGETDKRLNDGAEEELQVLSL 371
>gi|449300715|gb|EMC96727.1| hypothetical protein BAUCODRAFT_34119 [Baudoinia compniacensis UAMH
10762]
Length = 350
Score = 206 bits (524), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 122/338 (36%), Positives = 188/338 (55%), Gaps = 13/338 (3%)
Query: 23 KDNGKNVI--VSGTPPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLY 80
KD G V +G P + + PWVEKYRP L D+ + + ++ + + + +PHL++
Sbjct: 8 KDAGVGVKAHTNGAPTNFEL-PWVEKYRPVFLDDIVGNTETIERLKIIAKDGNMPHLIIS 66
Query: 81 GPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQ-SFSFGVK 139
G PG GKT++IL +AR+L G Y +LELNASD+RGIDVVR +I+ FA + + G
Sbjct: 67 GMPGIGKTTSILCLARQLLGDAYKEAVLELNASDERGIDVVRNRIKGFAQKKVTLPAGRH 126
Query: 140 ASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAP 199
K+V+LDEAD+MT AQ ALRR +E Y+ TRFA CNQ NKII LQSRC R++
Sbjct: 127 ---KIVILDEADSMTSGAQQALRRTMEIYSGTTRFAFACNQSNKIIEPLQSRCAILRYSR 183
Query: 200 LEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVY 259
L V +RL + +AE ++ ++ G+AALV GDMR+A+N LQST ++ + V+
Sbjct: 184 LTDAQVVKRLYQICKAENVEYSDDGIAALVFSAEGDMRQAINNLQSTFAGFGFVSGDNVF 243
Query: 260 LCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPS- 318
+P P ++ + + ++ + E+ G + DI+ TMF +PS
Sbjct: 244 RVVDSPHPVKVQAMLKSCQEQKVDEALDSLQEL-WGLGYSSHDII--TTMFRVTKTLPSL 300
Query: 319 --DVRVRLMNDLADIEYRLSFGCNDKLQLGSIISTFTQ 354
++ + ++ R+ G LQL ++ +
Sbjct: 301 SEHSKLEFIREIGFTHMRILEGVQTYLQLAGCVAKLCK 338
>gi|116206666|ref|XP_001229142.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
gi|88183223|gb|EAQ90691.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
Length = 356
Score = 206 bits (524), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 118/315 (37%), Positives = 181/315 (57%), Gaps = 14/315 (4%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP L D+ + + ++ + + + +PHL++ G PG GKT+++L ++R+L G
Sbjct: 33 PWVEKYRPVFLDDIVGNTETIERLKIIARDGNMPHLIISGMPGIGKTTSVLCLSRQLLGD 92
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFAL 161
Y +LELNASD+RGI+VVRQ+I+ FA Q + K+V+LDEAD+MT AQ AL
Sbjct: 93 SYKEAVLELNASDERGIEVVRQRIKGFA--QKKVTLPQGRHKIVILDEADSMTSGAQQAL 150
Query: 162 RRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVT 221
RR +E Y+ TRFA CNQ NKII LQSRC R+A L V +RL +IEAE ++
Sbjct: 151 RRTMEIYSNTTRFAFACNQSNKIIEPLQSRCAILRYAKLTDAQVVKRLLQIIEAEKVEYN 210
Query: 222 EGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQI---SYWLL 278
+ GLAALV GDMR+A+N LQST ++ + V+ +P P ++ + Y
Sbjct: 211 DEGLAALVFSAEGDMRQAINNLQSTFAGFGFVSADNVFKVVDSPHPIKVQAMLKACYEGN 270
Query: 279 NESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPS---DVRVRLMNDLADIEYRL 335
+S D+ + + ++ G + DI+ TMF +P+ ++ + ++ ++
Sbjct: 271 IDSALDTLRELWDL----GYSSHDIIS--TMFKVTKTIPTLSEHAKLEFIKEIGFTHMKI 324
Query: 336 SFGCNDKLQLGSIIS 350
G LQL ++
Sbjct: 325 LEGVQTLLQLSGCVA 339
>gi|357614163|gb|EHJ68945.1| replication factor C subunit 2 [Danaus plexippus]
Length = 349
Score = 206 bits (524), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 121/344 (35%), Positives = 187/344 (54%), Gaps = 11/344 (3%)
Query: 7 VSLMDFDEDENQNLKPKDNGKNVIVSGTPPDIKASPWVEKYRPQSLADVAAHRDIVDTID 66
V++M+ DE + PK + + S + PW+EKYRPQ+ D+ + D V +
Sbjct: 6 VTIMEVDE-----VDPKPSKSVTVQSKVTSHL---PWIEKYRPQTFTDIVGNEDTVSRLA 57
Query: 67 RLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQ 126
P++++ GPPG GKT+TIL +AR L G + + +LELNAS+DRGIDVVR +I+
Sbjct: 58 VFARTGNAPNIIIAGPPGVGKTTTILCLARVLLGPAFKDAVLELNASNDRGIDVVRNKIK 117
Query: 127 DFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIP 186
FA Q + K+V+LDEAD+MT AQ ALRR +E Y+ TRFAL N KII
Sbjct: 118 MFAQ-QKVTLP-PGRHKIVILDEADSMTDGAQQALRRTMELYSSTTRFALAANNSEKIIE 175
Query: 187 ALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQST 246
+QSRC R+ L + ++ V E E L TE G+ A+V GD+R ALN LQST
Sbjct: 176 PIQSRCAVLRYTKLSDAQILAKVIEVCEKEDLSYTEEGVNAVVFTAQGDLRAALNNLQST 235
Query: 247 HMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVRE 306
++ + V+ P P ++ + + +++K I+++ R G A DI+
Sbjct: 236 AQGFAHVSPDNVFKVCDEPHPMLVKTMLEACTRKDIYEAYKVIAKL-CRLGYATEDILSN 294
Query: 307 VTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDKLQLGSIIS 350
+ + + DVR+ L+ + + R + G +LQL ++++
Sbjct: 295 MFRVSKTLSVSEDVRLGLIKQIGLTQMRAADGLTSQLQLAALLA 338
>gi|342875984|gb|EGU77649.1| hypothetical protein FOXB_11824 [Fusarium oxysporum Fo5176]
Length = 697
Score = 206 bits (524), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 107/233 (45%), Positives = 149/233 (63%), Gaps = 4/233 (1%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP L DV + + ++ + + E +PH+++ G PG GKT+++L +AR+L G
Sbjct: 34 PWVEKYRPVFLDDVVGNTETIERLKIIAREGNMPHVIISGMPGIGKTTSVLCLARQLLGE 93
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQ-SFSFGVKASVKLVLLDEADAMTKDAQFA 160
Y +LELNASD+RGIDVVR +I+ FA + + G KLV+LDEAD+MT AQ A
Sbjct: 94 SYKEAVLELNASDERGIDVVRNRIKGFAQKKVTLPAGRH---KLVILDEADSMTSGAQQA 150
Query: 161 LRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDV 220
LRR +E Y+ TRFA CNQ NKII LQSRC R+A L V +RL +IEAE ++
Sbjct: 151 LRRTMEIYSNTTRFAFACNQSNKIIEPLQSRCAILRYAKLTDAQVVKRLMQIIEAEKVEY 210
Query: 221 TEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQI 273
++ GLAALV GDMR+A+N LQST ++ + V+ +P P ++ +
Sbjct: 211 SDDGLAALVFSAEGDMRQAINNLQSTFAGFGFVSGDNVFKVVDSPHPIKVQAM 263
>gi|313229768|emb|CBY18583.1| unnamed protein product [Oikopleura dioica]
Length = 350
Score = 206 bits (524), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 120/322 (37%), Positives = 196/322 (60%), Gaps = 16/322 (4%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENR-LPHLLLYGPPGTGKTSTILAVARKLYG 100
PW+EKYRP+ + DV A ++V + + E + LP++L YGPPGTGKTSTILA+AR ++G
Sbjct: 28 PWIEKYRPKGVNDVCAQEEVVAMLKAVLIEGKELPNMLFYGPPGTGKTSTILAMARDMFG 87
Query: 101 AQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSF---GVKA-SVKLVLLDEADAMTKD 156
+ ELNASD+RGI VVR+++++FA T + S G K + KL++LDEAD+MTK
Sbjct: 88 NLASERVCELNASDERGIAVVREKVKNFAMTTANSQRADGKKCPNFKLIILDEADSMTKS 147
Query: 157 AQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAE 216
AQ ALRR +E Y+K+TRF L+CN V++II + SR +FRF L +++H+ EAE
Sbjct: 148 AQEALRRTMEVYSKSTRFCLLCNYVSRIIDPITSRTAKFRFRLLPKEIQYNQIRHIREAE 207
Query: 217 GLDVTEGGLAALVRLCNGDMRKALNILQSTH-MASQQITEEAV----YLCTGNPLPKDIE 271
+ ++E + L+ + GDMR+A+N LQS H + +IT + V LC P K I+
Sbjct: 208 NVQISENAVEELISVAAGDMRRAVNFLQSLHRLHEDEITPDDVRDVAILC---PAEK-ID 263
Query: 272 QISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDV-RVRLMNDLAD 330
++ ++S+ + ++ + ++ G + ++ V D +V ++N +
Sbjct: 264 EVIREARSKSYENMLTKVQAL-LQDGYPAGQFMHQLQDAVIADDAIEDFQKVNIINQIGK 322
Query: 331 IEYRLSFGCNDKLQLGSIISTF 352
++ L+ G ++K+Q+ +I+S
Sbjct: 323 ADHALTDGADEKVQILAIVSVL 344
>gi|256053212|ref|XP_002570095.1| replication factor C / DNA polymerase III gamma-tau subunit
[Schistosoma mansoni]
gi|350645477|emb|CCD59829.1| replication factor C / DNA polymerase III gamma-tau subunit,
putative [Schistosoma mansoni]
Length = 362
Score = 206 bits (524), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 103/235 (43%), Positives = 146/235 (62%), Gaps = 14/235 (5%)
Query: 21 KPKDNGKNVIVSGTPPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLY 80
KP+D+ + + K PWVEKYRP+++ +VA ++V + R + LP+LL Y
Sbjct: 11 KPQDSKRRI------KSQKHIPWVEKYRPKTVGEVAYQTEVVSVLQRCIEGSDLPNLLFY 64
Query: 81 GPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKA 140
GPPGTGKTS ILA+AR+L+G Y +LELNASD+RGI V+R++++ FA S +
Sbjct: 65 GPPGTGKTSLILALARQLFGPLYSERVLELNASDERGISVIREKVKAFAHIAVSSSTNSS 124
Query: 141 SV--------KLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRC 192
KL++LDEAD+MT AQ ALRR +E + TRF L CN V +II + SRC
Sbjct: 125 GSSSTNIPPYKLIILDEADSMTAPAQAALRRTMETEMRTTRFCLTCNYVTRIIEPITSRC 184
Query: 193 TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTH 247
+FRF PL+ RL+H+ +AE L +T L L+ LC+GD+R+ + +LQ H
Sbjct: 185 AKFRFRPLDNEIARSRLRHIADAENLSITNETLDHLLSLCHGDLRQGITMLQCVH 239
>gi|67525023|ref|XP_660573.1| hypothetical protein AN2969.2 [Aspergillus nidulans FGSC A4]
gi|40744364|gb|EAA63540.1| hypothetical protein AN2969.2 [Aspergillus nidulans FGSC A4]
Length = 754
Score = 206 bits (524), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 105/216 (48%), Positives = 144/216 (66%), Gaps = 12/216 (5%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSEN-RLPHLLLYGPPGTGKTSTILAVARKLYG 100
PWVEKYRP++L DVAA T R +LPH+L YGPPGTGKTSTILA+A+ L+G
Sbjct: 401 PWVEKYRPKTLDDVAAQDHTTKTWARTNQAALQLPHMLFYGPPGTGKTSTILALAKSLFG 460
Query: 101 -AQYHNMILELNASDDRGIDVVRQQIQDFASTQ-SFSFGVKAS---------VKLVLLDE 149
A Y + ILELNASD+RGI +VR++++ FA Q S G+ A K+++LDE
Sbjct: 461 PALYRSRILELNASDERGIGIVREKVKGFARVQLSHPTGLDAEYFEKYPCPPFKIIILDE 520
Query: 150 ADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERL 209
AD+MT+DAQ ALRR +E+Y++ TRF L+CN V +II L SRC++FRF PL+ +RL
Sbjct: 521 ADSMTQDAQSALRRTMEQYSRITRFCLVCNYVTRIIEPLASRCSKFRFKPLDNSAAGDRL 580
Query: 210 KHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQS 245
+ + E L + G + L+ +GD+R+A+ LQS
Sbjct: 581 AQIAQLEKLSLENGVVDKLISCSDGDLRRAITYLQS 616
>gi|380013855|ref|XP_003690961.1| PREDICTED: LOW QUALITY PROTEIN: replication factor C subunit 2-like
[Apis florea]
Length = 351
Score = 206 bits (524), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 117/346 (33%), Positives = 186/346 (53%), Gaps = 6/346 (1%)
Query: 11 DFDEDENQNLKPKDNGKNVIVSGTPPDIKAS--PWVEKYRPQSLADVAAHRDIVDTIDRL 68
D DE + + P +G NV + D K PW+EKYRPQ +D+ + D V +
Sbjct: 6 DIDESMDIEILPSTSGYNV-KNNKQKDGKLDHLPWIEKYRPQIFSDIVGNEDTVSRLSVF 64
Query: 69 TSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDF 128
+ P++++ GPPG GKT+TIL +AR L G + +LELNAS+DRGIDVVR +I+ F
Sbjct: 65 AQQGNCPNIIIAGPPGVGKTTTILCLARILLGPIFKEAVLELNASNDRGIDVVRNKIKMF 124
Query: 129 ASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPAL 188
A Q K K+++LDEAD+MT AQ ALRR +E Y+ TRFAL CN +KII +
Sbjct: 125 A--QKRVNLPKGKHKIIILDEADSMTSGAQQALRRTMEIYSNTTRFALACNSSDKIIEPI 182
Query: 189 QSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHM 248
QSRC R+ L + ++ + + E + T+ GL A+V GDMR+ALN LQSTH
Sbjct: 183 QSRCAMLRYGKLSDAQILAKIIDICKKEDVSHTDDGLEAIVFTAQGDMRQALNNLQSTHN 242
Query: 249 ASQQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVT 308
+ E V+ P P ++++ + + + ++ + E + G + DI+ +
Sbjct: 243 GFNHVNSENVFKVCDEPHPLLVKEMLEFCKEGNISKAYG-VMEHLWKMGYSAEDIINNIF 301
Query: 309 MFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDKLQLGSIISTFTQ 354
+ + +++ + ++ + G N LQ+ S+++ +
Sbjct: 302 KVAKNLLIDETLKLDFVKEIGITHLGIVDGVNSLLQMNSLLARLCK 347
>gi|330945949|ref|XP_003306663.1| hypothetical protein PTT_19852 [Pyrenophora teres f. teres 0-1]
gi|311315764|gb|EFQ85258.1| hypothetical protein PTT_19852 [Pyrenophora teres f. teres 0-1]
Length = 353
Score = 206 bits (524), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 119/313 (38%), Positives = 178/313 (56%), Gaps = 10/313 (3%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP L DV + + ++ + + + +PH+++ G PG GKT++IL +AR+L G
Sbjct: 30 PWVEKYRPVYLDDVVGNTETIERLKIIAKDGNMPHMIISGMPGIGKTTSILCLARQLLGD 89
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQ-SFSFGVKASVKLVLLDEADAMTKDAQFA 160
Y +LELNASD+RGIDVVR +I+ FA + + + G + KLV+LDEAD+MT AQ A
Sbjct: 90 AYKEAVLELNASDERGIDVVRNRIKGFAQKKVTLAPGRQ---KLVILDEADSMTSGAQQA 146
Query: 161 LRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDV 220
LRR +E Y+ TRFA CNQ NKII LQSRC R+A L V R+ ++EAE +
Sbjct: 147 LRRTMEIYSATTRFAFACNQSNKIIEPLQSRCAILRYARLTDAQVVRRIMQIVEAEDVKY 206
Query: 221 TEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNE 280
++ G+AALV GDMR+A+N LQST + + V+ +P P ++ + +
Sbjct: 207 SDDGIAALVFSAEGDMRQAINNLQSTFAGFGFVNGDNVFKVVDSPHPIKVQAMIKACHEQ 266
Query: 281 SFADSFKRISEMKMRKGLALVDIVREVTMF-VFKI--KMPSDVRVRLMNDLADIEYRLSF 337
D+ + E+ G + DI+ TMF V K + ++ + ++ R+
Sbjct: 267 RVDDALTSLKEL-WDLGYSCHDIIS--TMFKVTKTIDTLSEHAKLEFIKEIGFTHMRILE 323
Query: 338 GCNDKLQLGSIIS 350
G LQL ++
Sbjct: 324 GVQTLLQLSGCVA 336
>gi|403350390|gb|EJY74655.1| ATPase, AAA family protein [Oxytricha trifallax]
Length = 374
Score = 206 bits (524), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 116/332 (34%), Positives = 203/332 (61%), Gaps = 16/332 (4%)
Query: 35 PPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAV 94
P K +PWVEKYRP + +V+ ++V + + ++PHL+ YGPPGTGKTSTILA+
Sbjct: 42 PSRPKFTPWVEKYRPSKVEEVSHQTEVVSALRQSILTGQVPHLMFYGPPGTGKTSTILAL 101
Query: 95 ARKLYGAQYHNM-ILELNASDDRGIDVVRQQIQDFASTQ-----SFSFGVKASVKLVLLD 148
+++L+G ++ +LELNASD+RGI +VR++I+ FA + SF +++++LD
Sbjct: 102 SKELFGHEFFKQRVLELNASDERGIAIVREKIKKFAQRKISKHPDSSFQC-PPIQIIILD 160
Query: 149 EADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTER 208
EAD+MT DAQ ALRR+IE+Y+ NTRF +ICN ++KII L SRC +FRF+P+ ER
Sbjct: 161 EADSMTIDAQAALRRIIEQYSTNTRFCIICNYISKIIDPLASRCVKFRFSPIAKEAQIER 220
Query: 209 LKHVIEAEGLDV-TEGGLAALVRLCNGDMRKALNILQS-THMASQQITEEAVYLCTGNPL 266
LK + E E ++V ++ ALV + GD+R+++N LQ+ + QQ+ + + +G +
Sbjct: 221 LKMICERENVNVASDNVFNALVDISAGDLRRSINTLQTASSFKLQQLNVKDIESISG-VV 279
Query: 267 PKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDI----VREVTMFVFKIKMPSDVRV 322
P+D+ + ++ ++ D F + ++ L D+ ++ + F+ K+ +
Sbjct: 280 PEDVIRKIERVVTQT--DGFSEVQQLTQELILDGFDVQQLMIQMLDYFLINDKLSDLKKA 337
Query: 323 RLMNDLADIEYRLSFGCNDKLQLGSIISTFTQ 354
R+ +A+ + ++ G +++L L +S+ ++
Sbjct: 338 RISEIVAETDVKVIQGGDEELNLLYTLSSVSK 369
>gi|443732297|gb|ELU17070.1| hypothetical protein CAPTEDRAFT_192756 [Capitella teleta]
Length = 340
Score = 206 bits (523), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 117/320 (36%), Positives = 179/320 (55%), Gaps = 5/320 (1%)
Query: 32 SGTPPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTI 91
S P A VEK+RP L DV + + + + + +P+L++ GPPGTGKT++I
Sbjct: 9 SRAPSVTPAMTMVEKFRPILLRDVVGNEETISRLQVFAEQGNVPNLIIAGPPGTGKTTSI 68
Query: 92 LAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQ-SFSFGVKASVKLVLLDEA 150
L ++R L GA Y + +LELNAS+DRGIDVVR +I+ FA + S G K+++LDEA
Sbjct: 69 LCLSRALLGASYKDAVLELNASNDRGIDVVRNKIKMFAQKKVSLPAGRH---KVIILDEA 125
Query: 151 DAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLK 210
D+MT AQ ALRR +E Y+K TRFAL CN +KII +QSRC R++ L + ERL+
Sbjct: 126 DSMTDGAQQALRRTMEIYSKTTRFALACNSSDKIIEPIQSRCAVLRYSKLSDAQLLERLQ 185
Query: 211 HVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDI 270
V E + TE G+ A++ GDMR+ALN LQST + E V+ P P +
Sbjct: 186 EVCMKESVSYTEDGMEAVIFTSQGDMRQALNNLQSTCQGFGHVNSENVFKVCDEPHPMLV 245
Query: 271 EQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLAD 330
+ + +N ++K +S + G A DIV + MP +++ + ++
Sbjct: 246 KDMLQHCINSDIDAAYKIMSHL-WSLGYAPQDIVGIIFRVAKTHDMPEFLKLEFIKEIGF 304
Query: 331 IEYRLSFGCNDKLQLGSIIS 350
+++ G + LQ+ +++
Sbjct: 305 THMKIAEGVDSLLQMSGLLA 324
>gi|225554309|gb|EEH02609.1| conserved hypothetical protein [Ajellomyces capsulatus G186AR]
gi|240277074|gb|EER40584.1| activator 1 37 kDa subunit [Ajellomyces capsulatus H143]
gi|325095015|gb|EGC48325.1| activator 1 37 kDa subunit [Ajellomyces capsulatus H88]
Length = 354
Score = 206 bits (523), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 122/330 (36%), Positives = 184/330 (55%), Gaps = 15/330 (4%)
Query: 31 VSGTPPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTST 90
++G P D + PWVEKYRP L D+ + + ++ + + +PH+++ G PG GKT++
Sbjct: 19 LAGAPADYEL-PWVEKYRPVFLDDIVGNTETIERLKIIARNGNMPHVIISGMPGIGKTTS 77
Query: 91 ILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEA 150
IL +AR++ G Y +LELNASD+RGIDVVR +I+ FA Q + KLV+LDEA
Sbjct: 78 ILCLARQMLGDSYKEAVLELNASDERGIDVVRNRIKGFA--QKKVTLPQGRHKLVILDEA 135
Query: 151 DAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLK 210
D+MT AQ ALRR +E Y+ TRFA CNQ NKII LQSRC R+A L + +RL
Sbjct: 136 DSMTSGAQQALRRTMEIYSTTTRFAFACNQSNKIIEPLQSRCAILRYARLTDGQILKRLT 195
Query: 211 HVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDI 270
+ EAE + +E GL AL+ GDMR+A+N LQST ++ E V+ +P P +
Sbjct: 196 QICEAEKVKYSEDGLEALIFSAEGDMRQAINNLQSTWAGFGFVSGENVFRVVDSPHPVKV 255
Query: 271 EQI--SYWLLN-ESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPS---DVRVRL 324
+ + + W ++ DS + ++ G + DI+ TMF MP+ R+
Sbjct: 256 QAMIKACWEGKIDAALDSLNELWDL----GYSSHDIIS--TMFRVTKTMPTLSEHTRLEF 309
Query: 325 MNDLADIEYRLSFGCNDKLQLGSIISTFTQ 354
+ ++ R+ G +QL ++ +
Sbjct: 310 IKEIGFTHMRILEGVQTLVQLSGCLAKLCR 339
>gi|340729148|ref|XP_003402870.1| PREDICTED: replication factor C subunit 2-like [Bombus terrestris]
Length = 351
Score = 206 bits (523), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 118/344 (34%), Positives = 182/344 (52%), Gaps = 7/344 (2%)
Query: 13 DEDENQNLKPKDNGKNVIVSGTPPDIKAS--PWVEKYRPQSLADVAAHRDIVDTIDRLTS 70
DE N + P +G N+ D K+S PW+EKYRPQ +D+ + D V +
Sbjct: 8 DEPMNVEVVPSTSGYNI--KNKEKDKKSSNLPWIEKYRPQIFSDIVGNEDTVSRLSVFAE 65
Query: 71 ENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFAS 130
P++++ GPPG GKT+TIL +AR L G + +LELNAS++RGIDVVR +I+ FA
Sbjct: 66 HGNCPNIIIAGPPGVGKTTTILCLARILLGPVFKEAVLELNASNERGIDVVRNKIKMFA- 124
Query: 131 TQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQS 190
Q K K+++LDEAD+MT AQ ALRR +E Y+ TRFAL CN KII +QS
Sbjct: 125 -QKKVNLAKGKHKIIILDEADSMTDGAQQALRRTMEIYSNTTRFALACNTSEKIIEPIQS 183
Query: 191 RCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMAS 250
RC R+ L + ++ V + E + T+ GL A+V GDMR+ALN LQST+
Sbjct: 184 RCAMLRYGKLSDAQILAKIIEVCQKEDVSHTDDGLEAIVFTAQGDMRQALNNLQSTYNGF 243
Query: 251 QQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMF 310
+ E V+ P P ++++ + ++ I E + G + D+V +
Sbjct: 244 GHVNSENVFKVCDEPHPLLVKEMLELCAQGKISKAYG-IMEHLWKMGYSAEDLVSNIFRV 302
Query: 311 VFKIKMPSDVRVRLMNDLADIEYRLSFGCNDKLQLGSIISTFTQ 354
+ + +++ + ++ + G N LQ+ S+++ Q
Sbjct: 303 CTNLSIEEPLKLDFIKEIGITHLGIVDGINSLLQMNSLLARLCQ 346
>gi|258569615|ref|XP_002543611.1| activator 1 40 kDa subunit [Uncinocarpus reesii 1704]
gi|237903881|gb|EEP78282.1| activator 1 40 kDa subunit [Uncinocarpus reesii 1704]
Length = 278
Score = 206 bits (523), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 107/244 (43%), Positives = 154/244 (63%), Gaps = 5/244 (2%)
Query: 31 VSGTPPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTST 90
++G PPD + PWVEKYRP L DV + + ++ + + + +PH+++ G PG GKT++
Sbjct: 19 MAGAPPDYEL-PWVEKYRPVFLDDVVGNTETIERLKIIARDGNMPHVIISGMPGIGKTTS 77
Query: 91 ILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQ-SFSFGVKASVKLVLLDE 149
IL +AR++ G Y +LELNASD+RGIDVVR +I+ FA + + G KLV+LDE
Sbjct: 78 ILCLARQMLGDAYKEAVLELNASDERGIDVVRNRIKGFAQKKVTLPPGKH---KLVILDE 134
Query: 150 ADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERL 209
AD+MT AQ ALRR +E Y+ TRFA CNQ NKII LQSRC R++ L + ERL
Sbjct: 135 ADSMTSGAQQALRRTMEIYSTTTRFAFACNQSNKIIEPLQSRCAILRYSRLTDTQIVERL 194
Query: 210 KHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKD 269
+ +AE + ++ G+AALV GDMR+A+N LQST I+ + V+ +P P
Sbjct: 195 DQICKAEDVKHSDDGIAALVFSAEGDMRQAINNLQSTWAGFGFISGDNVFRVVDSPHPVK 254
Query: 270 IEQI 273
++ +
Sbjct: 255 VQAM 258
>gi|150865911|ref|XP_001385318.2| Replication factor C, subunit RFC4 [Scheffersomyces stipitis CBS
6054]
gi|149387167|gb|ABN67289.2| Replication factor C, subunit RFC4 [Scheffersomyces stipitis CBS
6054]
Length = 369
Score = 206 bits (523), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 109/232 (46%), Positives = 148/232 (63%), Gaps = 13/232 (5%)
Query: 38 IKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARK 97
++ +PWVEKYRP++L DVA+ V + + LPH+L YGPPGTGKTSTILA++++
Sbjct: 20 LEHTPWVEKYRPRNLDDVASQDHAVKVLKKTMESANLPHMLFYGPPGTGKTSTILALSKQ 79
Query: 98 LYGAQ-YHNMILELNASDDRGIDVVRQQIQDFA-------STQSFSFGVKASVKLVLLDE 149
LYG Y + +LELNASD+RGI +VRQ+I++FA S + K+++LDE
Sbjct: 80 LYGPNLYKSRVLELNASDERGISIVRQKIKNFARLTVSNPSKEDLEKYPCPPYKIIILDE 139
Query: 150 ADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERL 209
AD+MT DAQ ALRR IE Y+ TRF LICN V +II L SRC++FRF L + RL
Sbjct: 140 ADSMTNDAQAALRRTIENYSNITRFCLICNYVTRIIDPLASRCSKFRFRLLNNENALNRL 199
Query: 210 KHVIEAE--GLDVTEGGLAALVRLCNGDMRKALNILQST---HMASQQITEE 256
K++ E E LD + L ++R+ GD+RKA+ LQS H + TEE
Sbjct: 200 KYIAEQEHISLDSNQLVLQEVLRISGGDLRKAITFLQSATKLHKSLAAPTEE 251
>gi|195135525|ref|XP_002012183.1| GI16571 [Drosophila mojavensis]
gi|193918447|gb|EDW17314.1| GI16571 [Drosophila mojavensis]
Length = 331
Score = 206 bits (523), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 113/309 (36%), Positives = 176/309 (56%), Gaps = 3/309 (0%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PW+EKYRP ++ + D V + +++ P++++ GPPG GKT+TI +AR L G
Sbjct: 17 PWIEKYRPVKFDEIVGNEDTVARLSVFSTQGNSPNIIIAGPPGVGKTTTIQCLARILLGD 76
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFAL 161
Y + +LELNAS++RGIDVVR +I+ FA Q + + K+V+LDEAD+MT+ AQ +L
Sbjct: 77 SYKDAVLELNASNERGIDVVRNKIKMFAQ-QKVTLP-RGRHKIVILDEADSMTEGAQQSL 134
Query: 162 RRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVT 221
RR +E Y+ TRFAL CN KII +QSRC RF+ L V +L V + E L
Sbjct: 135 RRTMEIYSNTTRFALACNTSEKIIEPIQSRCAMLRFSKLSDAQVLAKLIEVCQLEQLKYD 194
Query: 222 EGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNES 281
E GL A+V GDMR+ALN LQST +IT V+ P P ++ + +
Sbjct: 195 EDGLEAIVFTAQGDMRQALNNLQSTAQGFGEITGANVFKVCDEPHPMLLQDMLQHCASND 254
Query: 282 FADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCND 341
++K ++++ R G A DI+ + ++ + +++ + ++ ++ GCN
Sbjct: 255 IHKAYKILAKL-WRLGYAPEDIIGNIFRVCKRLNVDEQLKLNFIREIGITHMKIVDGCNS 313
Query: 342 KLQLGSIIS 350
LQL S+++
Sbjct: 314 LLQLTSLLA 322
>gi|146414968|ref|XP_001483454.1| hypothetical protein PGUG_04183 [Meyerozyma guilliermondii ATCC
6260]
Length = 347
Score = 206 bits (523), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 101/216 (46%), Positives = 146/216 (67%), Gaps = 8/216 (3%)
Query: 38 IKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARK 97
++ +PWVEKYRP++L DVA+ V+ + + LPH+L YGPPGTGKTST+LA+AR+
Sbjct: 17 LEHTPWVEKYRPKNLDDVASQDHAVNVLKKSLVSANLPHMLFYGPPGTGKTSTVLALARE 76
Query: 98 LYGAQY-HNMILELNASDDRGIDVVRQQIQDFA-------STQSFSFGVKASVKLVLLDE 149
LYG + +LELNASD+RGI +VRQ++++FA S + KL++LDE
Sbjct: 77 LYGPDLIKSRVLELNASDERGIAIVRQKVKNFARLTVSNASPEDLEKYPCPPYKLIILDE 136
Query: 150 ADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERL 209
AD+MT DAQ ALRR +E Y+ TRF LICN + +II L RC++FRF PL + +RL
Sbjct: 137 ADSMTYDAQAALRRTMETYSGVTRFCLICNYITRIIDPLALRCSKFRFKPLANDNAVQRL 196
Query: 210 KHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQS 245
+++++ E L+V E + L+ + NGD+R+A+ LQS
Sbjct: 197 RYIVQQEELNVDEDVFSYLLTISNGDLRRAITYLQS 232
>gi|342186045|emb|CCC95530.1| unnamed protein product [Trypanosoma congolense IL3000]
Length = 341
Score = 206 bits (523), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 123/327 (37%), Positives = 181/327 (55%), Gaps = 20/327 (6%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP S+ D+ + D V + + E LP+LLL GPPGTGKT+++L +AR L
Sbjct: 7 PWVEKYRPISMDDIVGNADAVARLQVIAREGNLPNLLLCGPPGTGKTTSMLCLARSLLSD 66
Query: 102 Q---------YHNMILELNASDDRGIDVVRQQIQDFASTQSF-------SFGVKASV-KL 144
+LELNASDDRG+DVVR++I+ FA T+ S K ++ K+
Sbjct: 67 SEGGGSSSNALKEAVLELNASDDRGLDVVREKIKLFAQTKKTLPQKVDDSGNRKINLHKI 126
Query: 145 VLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVH 204
V+LDEAD+MT AQ ALRR IE ++ TRFA CN +KII +QSRC RF L
Sbjct: 127 VILDEADSMTPAAQQALRRTIELHSSTTRFAFACNNSHKIIEPIQSRCAVVRFKKLSHAD 186
Query: 205 VTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGN 264
+ +RL H+I E + TE GL AL+ L GD+R A+N LQ+T + + V+
Sbjct: 187 ILKRLMHIIREENVTYTEDGLEALLYLAEGDLRSAVNALQATCSGYSVVNADNVFKVCDL 246
Query: 265 PLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRL 324
P P +E I L + A++ K + + + +G A D++ +K+ D + +L
Sbjct: 247 PHPHLVEGILTSCLKQDLAEAHKEMQRL-LGRGYATSDVISTFFRAAQNVKLFRDEKQQL 305
Query: 325 --MNDLADIEYRLSFGCNDKLQLGSII 349
+ + ++ R++ G LQL S++
Sbjct: 306 EVLRIIGEVTMRIAEGVGTPLQLASML 332
>gi|19115452|ref|NP_594540.1| DNA replication factor C complex subunit Rfc2 [Schizosaccharomyces
pombe 972h-]
gi|1350581|sp|Q09843.1|RFC2_SCHPO RecName: Full=Replication factor C subunit 2; Short=Replication
factor C2; AltName: Full=Activator 1 41 kDa subunit
gi|1039340|emb|CAA91237.1| DNA replication factor C complex subunit Rfc2 [Schizosaccharomyces
pombe]
Length = 340
Score = 206 bits (523), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 120/326 (36%), Positives = 197/326 (60%), Gaps = 16/326 (4%)
Query: 39 KASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKL 98
K+ PWVE YRP++L V++ V + + N LPH+L YG PGTGKTSTILA++R+L
Sbjct: 17 KSIPWVELYRPKTLDQVSSQESTVQVLKKTLLSNNLPHMLFYGSPGTGKTSTILALSREL 76
Query: 99 YGAQY-HNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKA----SVKLVLLDEADAM 153
+G Q + +LELNASD+RGI ++R++++ FA T + + V K+++LDEAD+M
Sbjct: 77 FGPQLMKSRVLELNASDERGISIIREKVKSFAKT-TVTNKVDGYPCPPFKIIILDEADSM 135
Query: 154 TKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVI 213
T+DAQ ALRR +E Y + TRF LICN + +II L SRC+++RF PL+ ++ +RL+ +
Sbjct: 136 TQDAQAALRRTMESYARITRFCLICNYMTRIIDPLSSRCSKYRFKPLDNENMVKRLEFIA 195
Query: 214 EAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQ--QITEEAVYLCTGNPLPKDIE 271
+ + + G + ALV GDMRKA+ LQS Q IT +V G +P +I
Sbjct: 196 ADQAVSMEPGVVNALVECSGGDMRKAITFLQSAANLHQGTPITISSVEELAG-AVPYNII 254
Query: 272 QISYWLLNESFADSFKRISEMK---MRKGLALVDIVREVTMFVFKIK-MPSDVRVRLMND 327
+ LL+ ++ + I + +G + I+ ++ + K + + S V+ ++
Sbjct: 255 R---SLLDTAYTKNVSNIETLSRDVAAEGYSTGIILSQLHDVLLKEETLSSPVKYKIFMK 311
Query: 328 LADIEYRLSFGCNDKLQLGSIISTFT 353
L++++ RL+ G ++ LQL ++S+ +
Sbjct: 312 LSEVDKRLNDGADETLQLLDLLSSIS 337
>gi|400600989|gb|EJP68657.1| replication factor C [Beauveria bassiana ARSEF 2860]
Length = 355
Score = 206 bits (523), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 105/233 (45%), Positives = 148/233 (63%), Gaps = 4/233 (1%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP L DV + + ++ + + E +PH+++ G PG GKT+++L +AR+L G
Sbjct: 34 PWVEKYRPVFLDDVVGNTETIERLKIIAKEGNMPHVIISGMPGIGKTTSVLCLARELLGE 93
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQ-SFSFGVKASVKLVLLDEADAMTKDAQFA 160
Y +LELNASD+RGIDVVR +I+ FA + + G KL++LDEAD+MT AQ A
Sbjct: 94 SYKEAVLELNASDERGIDVVRNRIKGFAQKKVTLPPGRH---KLIILDEADSMTSGAQQA 150
Query: 161 LRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDV 220
LRR +E Y+ TRFA CN NKII LQSRC R+A L V +RL +IEAE ++
Sbjct: 151 LRRTMEIYSNTTRFAFACNMSNKIIEPLQSRCAILRYAKLTDAQVVKRLMQIIEAEKVEY 210
Query: 221 TEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQI 273
++ GLAALV GDMR+A+N LQST ++ + V+ +P P ++ +
Sbjct: 211 SDDGLAALVFSAEGDMRQAINNLQSTFSGFGFVSGDNVFKVVDSPHPIKVQAM 263
>gi|452979410|gb|EME79172.1| hypothetical protein MYCFIDRAFT_79709 [Pseudocercospora fijiensis
CIRAD86]
Length = 405
Score = 206 bits (523), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 104/222 (46%), Positives = 144/222 (64%), Gaps = 13/222 (5%)
Query: 37 DIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVAR 96
D K PWVEKYRP+SL DVAA V + R LPH+L YGPPGTGKTST+LA+A+
Sbjct: 30 DNKLQPWVEKYRPKSLDDVAAQDHTVTVLRRTLQSANLPHMLFYGPPGTGKTSTVLALAK 89
Query: 97 KLYGAQY-HNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKAS------------VK 143
+LYG + + +LELNASD+RGI +VR++++DFA Q + + K
Sbjct: 90 QLYGPELIKSRVLELNASDERGISIVREKVKDFARMQLSNPPAGPAGEEYRKKYPCPPYK 149
Query: 144 LVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPV 203
+++LDEAD+MT+DAQ ALRR +E Y+K TRF L+CN V +II L SRC++FRF L+
Sbjct: 150 IIVLDEADSMTQDAQSALRRTMETYSKITRFCLVCNYVTRIIDPLASRCSKFRFKLLDEG 209
Query: 204 HVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQS 245
+ R++ + E + + EG L+R +GD+RKA+ LQS
Sbjct: 210 NAGRRIEDIARLENVTLEEGVTNTLLRCSDGDLRKAITFLQS 251
>gi|261187582|ref|XP_002620210.1| activator 1 37 kDa subunit [Ajellomyces dermatitidis SLH14081]
gi|239594101|gb|EEQ76682.1| activator 1 37 kDa subunit [Ajellomyces dermatitidis SLH14081]
gi|239608919|gb|EEQ85906.1| activator 1 37 kDa subunit [Ajellomyces dermatitidis ER-3]
gi|327354067|gb|EGE82924.1| replication factor C subunit 4 [Ajellomyces dermatitidis ATCC
18188]
Length = 354
Score = 205 bits (522), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 108/241 (44%), Positives = 151/241 (62%), Gaps = 3/241 (1%)
Query: 31 VSGTPPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTST 90
++G P D + PWVEKYRP L DV + + ++ + + + +PH+++ G PG GKT++
Sbjct: 19 LAGAPADYEL-PWVEKYRPVFLDDVVGNTETIERLKIIARDGNMPHVIISGMPGIGKTTS 77
Query: 91 ILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEA 150
IL +AR++ G Y +LELNASD+RGIDVVR +I+ FA Q + KLV+LDEA
Sbjct: 78 ILCLARQMLGDAYKEAVLELNASDERGIDVVRNRIKGFA--QKKVTLPQGRHKLVILDEA 135
Query: 151 DAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLK 210
D+MT AQ ALRR +E Y+ TRFA CNQ NKII LQSRC R+A L V +RL
Sbjct: 136 DSMTSGAQQALRRTMEIYSTTTRFAFACNQSNKIIEPLQSRCAILRYARLTDAQVLKRLT 195
Query: 211 HVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDI 270
+ EAE + +E GLAAL+ GDMR+A+N LQST ++ + V+ +P P +
Sbjct: 196 QICEAENVKHSEDGLAALIFSAEGDMRQAINNLQSTWAGFGFVSGDNVFRVVDSPHPVKV 255
Query: 271 E 271
+
Sbjct: 256 Q 256
>gi|119196513|ref|XP_001248860.1| conserved hypothetical protein [Coccidioides immitis RS]
gi|392861939|gb|EAS37458.2| replication factor C subunit 4 [Coccidioides immitis RS]
Length = 352
Score = 205 bits (522), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 120/327 (36%), Positives = 183/327 (55%), Gaps = 11/327 (3%)
Query: 32 SGTPPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTI 91
+G PPD + PWVEKYRP L DV + + ++ + + + +PH+++ G PG GKT++I
Sbjct: 20 AGAPPDYEL-PWVEKYRPVFLDDVVGNTETIERLKIIARDGNMPHVIISGMPGIGKTTSI 78
Query: 92 LAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQ-SFSFGVKASVKLVLLDEA 150
L +AR++ G Y +LELNASD+RGIDVVR +I+ FA + + G KLV+LDEA
Sbjct: 79 LCLARQMLGDVYKEAVLELNASDERGIDVVRNRIKGFAQKKVTLPPGKH---KLVILDEA 135
Query: 151 DAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLK 210
D+MT AQ ALRR +E Y+ TRFA CNQ NKII LQSRC R++ L V +RL
Sbjct: 136 DSMTSGAQQALRRTMEIYSATTRFAFACNQSNKIIEPLQSRCAILRYSRLTDAQVVKRLM 195
Query: 211 HVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDI 270
+ EAE + ++ G+AALV GDMR+A+N LQST ++ + V+ +P P +
Sbjct: 196 QICEAEDVKYSDDGIAALVFSAEGDMRQAINNLQSTWAGFGFVSGDNVFRVVDSPHPVKV 255
Query: 271 EQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPS---DVRVRLMND 327
+ + + ++E+ G + DI+ TMF +PS ++ + +
Sbjct: 256 QAMIKACYEGKVDSALDTLTEL-WDLGYSSHDIIS--TMFRVTKTIPSLPEHSKLEFIKE 312
Query: 328 LADIEYRLSFGCNDKLQLGSIISTFTQ 354
+ R+ G +QL ++ +
Sbjct: 313 IGFTHMRILEGLQTFVQLSGCVAKLCK 339
>gi|432099509|gb|ELK28652.1| Replication factor C subunit 4 [Myotis davidii]
Length = 427
Score = 205 bits (522), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 138/394 (35%), Positives = 214/394 (54%), Gaps = 47/394 (11%)
Query: 7 VSLMDFDEDENQNLKP---KDNGKNVIV--SGTPPDIKASPWVEKYRPQSLADVAAHRDI 61
V++ F + + + KP KD G SG K PWVEKYRP+ + +VA ++
Sbjct: 29 VTMQAFLKGTSISTKPPLTKDRGVAATAGSSGENKKAKPVPWVEKYRPKCVDEVAFQEEV 88
Query: 62 VDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNM-ILELNASDDRGIDV 120
V + + LP+LL YGPPGTGKTSTILA AR+L+G + + +LELNASD+RGI V
Sbjct: 89 VAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGHELFRLRVLELNASDERGIQV 148
Query: 121 VRQQIQDFAS--------------------------TQSF---------SFGVKAS--VK 143
VR+++++FA T SF S+G K K
Sbjct: 149 VREKVKNFAQLTVSGSRSECIIQEPQLPSHCNLAAPTLSFCPLVIIVRQSYGGKPCPPFK 208
Query: 144 LVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPV 203
+V+LDEAD+MT AQ ALRR +EK +K TRF LICN V++II L SRC++FRF PL
Sbjct: 209 IVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDK 268
Query: 204 HVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTH--MASQQITEEAVYLC 261
+RL + + E + ++ GL+ LV++ GD+RKA+ LQS +++T++ +
Sbjct: 269 IQQQRLLDIADKEHVKISNEGLSCLVQVSEGDLRKAITFLQSATRLTGGKEVTDKVITDI 328
Query: 262 TGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVR 321
G + ++ + + SF D + + + + +G A +V ++ V + SD +
Sbjct: 329 AGVIPVETVDGVFAACQSGSF-DKLEAVVKDLIDEGHAATQLVNQLHDVVVENDALSDKQ 387
Query: 322 VRLMND-LADIEYRLSFGCNDKLQLGSIISTFTQ 354
++ + LAD++ L+ G ++ LQL S+ +T Q
Sbjct: 388 KSIITEKLADVDKCLADGADEHLQLISLCATVMQ 421
>gi|355716186|gb|AES05531.1| replication factor C 4, 37kDa [Mustela putorius furo]
Length = 272
Score = 205 bits (522), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 109/234 (46%), Positives = 153/234 (65%), Gaps = 7/234 (2%)
Query: 32 SGTPPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTI 91
SG K PWVEKYRP+ + +VA ++V + + LP+LL YGPPGTGKTSTI
Sbjct: 25 SGENKKTKPVPWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTI 84
Query: 92 LAVARKLYGAQYHNM-ILELNASDDRGIDVVRQQIQDFAS---TQSFSFGVKAS-VKLVL 146
LA AR+L+G + + +LELNASD+RGI VVR+++++FA + S S G K+V+
Sbjct: 85 LAAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPPFKIVI 144
Query: 147 LDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVT 206
LDEAD+MT AQ ALRR +EK +K TRF LICN V++II L SRC++FRF PL
Sbjct: 145 LDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQ 204
Query: 207 ERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTH--MASQQITEEAV 258
+RL + + E + ++ G+A LV++ GD+RKA+ LQS ++ITE+ +
Sbjct: 205 QRLLDIADKEHVKISNEGIAYLVKVSEGDLRKAITFLQSATRLTGGKEITEKVI 258
>gi|403416153|emb|CCM02853.1| predicted protein [Fibroporia radiculosa]
Length = 371
Score = 205 bits (522), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 107/265 (40%), Positives = 163/265 (61%), Gaps = 30/265 (11%)
Query: 22 PKDNGKNVIVSGTPPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYG 81
PK N N P+++ PWVEKYRP+++ D++A V + R + LPH+L YG
Sbjct: 12 PKKNAAN-------PELQ--PWVEKYRPKTIDDISAQEHTVAVLRRTLTSTNLPHMLFYG 62
Query: 82 PPGTGKTSTILAVARKLYGA-QYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKA 140
PPG+GKTSTILA++R+L+G + + +LELNASD+RGI +VR +I++FA + V +
Sbjct: 63 PPGSGKTSTILALSRQLFGPDNFRSRVLELNASDERGIAIVRDKIKNFARQTPRAQAVSS 122
Query: 141 --------SVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRC 192
K+++LDEAD+MT+DAQ ALRR++E Y + TRF L+CN V +II L SRC
Sbjct: 123 DGKTYPCPPYKIIILDEADSMTQDAQGALRRIMETYARITRFCLVCNYVTRIIEPLASRC 182
Query: 193 TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTH---MA 249
++FRF PL+ + RL + E + VT+ ++ L+ +GD+R+++ LQS M+
Sbjct: 183 SKFRFKPLDSTSTSSRLSQIALEEHISVTDEVVSTLINTSHGDLRRSITYLQSASRLAMS 242
Query: 250 SQQITEEAVYLCTGNPLPKDIEQIS 274
+ TE P DI++I+
Sbjct: 243 TNPPTEIT---------PSDIQEIA 258
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.320 0.134 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,256,458,315
Number of Sequences: 23463169
Number of extensions: 211173278
Number of successful extensions: 851600
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 7131
Number of HSP's successfully gapped in prelim test: 8407
Number of HSP's that attempted gapping in prelim test: 827966
Number of HSP's gapped (non-prelim): 17744
length of query: 364
length of database: 8,064,228,071
effective HSP length: 144
effective length of query: 220
effective length of database: 8,980,499,031
effective search space: 1975709786820
effective search space used: 1975709786820
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 77 (34.3 bits)