BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017884
(364 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9D0F6|RFC5_MOUSE Replication factor C subunit 5 OS=Mus musculus GN=Rfc5 PE=2 SV=1
Length = 339
Score = 407 bits (1045), Expect = e-113, Method: Compositional matrix adjust.
Identities = 196/323 (60%), Positives = 249/323 (77%), Gaps = 4/323 (1%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLY-G 100
PWVEKYRPQ+LAD+ +H+DI+ TI + SE+RLPHLLLYGPPGTGKTSTILA A++LY
Sbjct: 20 PWVEKYRPQTLADLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKD 79
Query: 101 AQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFA 160
++ +M+LELNASDDRGID+VR I FAST++ K KLV+LDEADAMT+DAQ A
Sbjct: 80 KEFGSMVLELNASDDRGIDIVRGPILSFASTRTI---FKKGFKLVILDEADAMTQDAQNA 136
Query: 161 LRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDV 220
LRRVIEK+T+NTRF LICN ++KIIPALQSRCTRFRF PL P + RL+HV++ E +D+
Sbjct: 137 LRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVQEENVDI 196
Query: 221 TEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNE 280
+E G+ ALV L +GDMR+ALNILQST+MA ++TEE VY CTG+PL DI I W+LN+
Sbjct: 197 SEDGMKALVTLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKTDIANILDWMLNQ 256
Query: 281 SFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCN 340
F ++K I E+K KGLAL DI+ EV +FV ++ PS VR+ L+ +ADIEYRLS G +
Sbjct: 257 DFTTAYKNIMELKTLKGLALHDILTEVHLFVHRVDFPSSVRIHLLTKMADIEYRLSVGTS 316
Query: 341 DKLQLGSIISTFTQARSAIVAAA 363
+K+QL S+I+ F R IVA A
Sbjct: 317 EKIQLSSLIAAFQVTRDLIVAEA 339
>sp|P40937|RFC5_HUMAN Replication factor C subunit 5 OS=Homo sapiens GN=RFC5 PE=1 SV=1
Length = 340
Score = 406 bits (1044), Expect = e-112, Method: Compositional matrix adjust.
Identities = 194/327 (59%), Positives = 251/327 (76%), Gaps = 4/327 (1%)
Query: 38 IKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARK 97
I+ PWVEKYRPQ+L D+ +H+DI+ TI + +E+RLPHLLLYGPPGTGKTSTILA A++
Sbjct: 17 IRNLPWVEKYRPQTLNDLISHQDILSTIQKFINEDRLPHLLLYGPPGTGKTSTILACAKQ 76
Query: 98 LY-GAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKD 156
LY ++ +M+LELNASDDRGID++R I FAST++ K KLV+LDEADAMT+D
Sbjct: 77 LYKDKEFGSMVLELNASDDRGIDIIRGPILSFASTRTI---FKKGFKLVILDEADAMTQD 133
Query: 157 AQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAE 216
AQ ALRRVIEK+T+NTRF LICN ++KIIPALQSRCTRFRF PL P + RL+HV+E E
Sbjct: 134 AQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEE 193
Query: 217 GLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYW 276
+D++E G+ ALV L +GDMR+ALNILQST+MA ++TEE VY CTG+PL DI I W
Sbjct: 194 KVDISEDGMKALVTLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKSDIANILDW 253
Query: 277 LLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLS 336
+LN+ F +++ I+E+K KGLAL DI+ E+ +FV ++ PS VR+ L+ +ADIEYRLS
Sbjct: 254 MLNQDFTTAYRNITELKTLKGLALHDILTEIHLFVHRVDFPSSVRIHLLTKMADIEYRLS 313
Query: 337 FGCNDKLQLGSIISTFTQARSAIVAAA 363
G N+K+QL S+I+ F R IVA A
Sbjct: 314 VGTNEKIQLSSLIAAFQVTRDLIVAEA 340
>sp|Q54ST4|RFC5_DICDI Probable replication factor C subunit 5 OS=Dictyostelium discoideum
GN=rfc5 PE=3 SV=1
Length = 347
Score = 370 bits (951), Expect = e-102, Method: Compositional matrix adjust.
Identities = 184/318 (57%), Positives = 231/318 (72%), Gaps = 5/318 (1%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP++L D+ AH DI TI +L N LPHLL YGPPGTGKTSTI A+ARKLYG
Sbjct: 25 PWVEKYRPKNLDDLIAHEDITQTITKLIDNNTLPHLLFYGPPGTGKTSTIQAIARKLYGD 84
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFAL 161
Y M+LELNASDDRGIDVVR+QI+ FAS+ F F KL++LDEAD+MT AQ AL
Sbjct: 85 NYSRMVLELNASDDRGIDVVREQIKTFASSM-FFFNTTVPYKLIILDEADSMTNIAQTAL 143
Query: 162 RRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTE-RLKHVIEAEGLDV 220
RRVIEKYTK TRF ++CN V KIIPALQSRCTRFRF+PL P TE RLK +IE E + V
Sbjct: 144 RRVIEKYTKTTRFCIVCNYVIKIIPALQSRCTRFRFSPL-PTPPTEIRLKEIIEKENVKV 202
Query: 221 TEGGLAALVRLCNGDMRKALNILQSTHMAS--QQITEEAVYLCTGNPLPKDIEQISYWLL 278
+ A++ L GDMRK LNILQS M+S ITEEA+Y CTG P+P DIE + WLL
Sbjct: 203 DSKAMNAVLELGCGDMRKCLNILQSVSMSSIDNNITEEAIYKCTGYPMPSDIELMVDWLL 262
Query: 279 NESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFG 338
N + ++F+ IS++K +KGL+L DI+ + FV +I + + + +L++ L+DIEY LS G
Sbjct: 263 NSDYEEAFQNISDLKKKKGLSLNDIIATLQKFVVQIDLDNVILCKLLSHLSDIEYNLSIG 322
Query: 339 CNDKLQLGSIISTFTQAR 356
++KLQLGS++ F +R
Sbjct: 323 SSEKLQLGSLVGCFQLSR 340
>sp|O14003|RFC3_SCHPO Replication factor C subunit 3 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=rfc3 PE=1 SV=2
Length = 342
Score = 350 bits (898), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 161/310 (51%), Positives = 226/310 (72%), Gaps = 3/310 (0%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP +L DV +H+DI+ T+++ S NR+PH+L YGPPGTGKTSTILA ARK+YG
Sbjct: 24 PWVEKYRPANLEDVVSHKDIISTLEKFISSNRVPHMLFYGPPGTGKTSTILACARKIYGP 83
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFAL 161
Y N ++ELNASDDRGID VR+QI++FAST+ ++ K+++LDEADAMT AQ AL
Sbjct: 84 NYRNQLMELNASDDRGIDAVREQIKNFASTRQI---FASTFKMIILDEADAMTLAAQNAL 140
Query: 162 RRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVT 221
RRVIEKYTKN RF +ICN +NKI PA+QSRCTRFRF PL P + + + HVI++E ++
Sbjct: 141 RRVIEKYTKNVRFCIICNYINKISPAIQSRCTRFRFQPLPPKEIEKTVDHVIQSEHCNID 200
Query: 222 EGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNES 281
A++RL GDMRKALNILQ+ H A I A+Y C G+P P DI+ ++N+
Sbjct: 201 PDAKMAVLRLSKGDMRKALNILQACHAAYDHIDVSAIYNCVGHPHPSDIDYFLKSIMNDE 260
Query: 282 FADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCND 341
F +F IS +K +KGLAL DI+ + + ++++ + ++ +++ LA IE+R+SFGC++
Sbjct: 261 FVIAFNTISSIKQQKGLALQDILTCIFEALDELEIKPNAKIFILDQLATIEHRMSFGCSE 320
Query: 342 KLQLGSIIST 351
K+QL ++I++
Sbjct: 321 KIQLSAMIAS 330
>sp|O74111|RFC3_BLAAD Replication factor C subunit 3 OS=Blastobotrys adeninivorans
GN=RFC3 PE=3 SV=1
Length = 338
Score = 322 bits (825), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 159/318 (50%), Positives = 218/318 (68%), Gaps = 8/318 (2%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP +L +VA H ++ TI + E +LPHLL +GPPGTGKT+TI+AVAR++YG
Sbjct: 18 PWVEKYRPTTLDEVAGHEGVITTIKKFVEEGKLPHLLFHGPPGTGKTTTIIAVARQIYGK 77
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFAST-QSFSFGVKASVKLVLLDEADAMTKDAQFA 160
Y NMILELNASD+RGIDVVR QI+ FAST Q FS G KLV+LDEADAMT AQ A
Sbjct: 78 NYRNMILELNASDERGIDVVRDQIKTFASTRQIFSSG----FKLVILDEADAMTNAAQNA 133
Query: 161 LRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDV 220
LRR+IEKY+ +TRF ++ N +K+ PAL SRCTRFRF+PL+ + RL HVIE E +D+
Sbjct: 134 LRRIIEKYSAHTRFCILANYTHKLNPALLSRCTRFRFSPLKEDAIKHRLAHVIEQESVDL 193
Query: 221 TEGGLAALVRLCNGDMRKALNILQSTHM---ASQQITEEAVYLCTGNPLPKDIEQISYWL 277
+ +L+ L +GDMR+ALN+LQ+ + A +QI+EE VY C G+P P DI + +
Sbjct: 194 SPEAFQSLLHLSSGDMRRALNVLQACYASVDAGEQISEELVYDCVGSPRPADIRTVLQAV 253
Query: 278 LNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSF 337
L+ S+ + S +K KGLAL D++ + K+ + + R+ L++ L++IE+RLS
Sbjct: 254 LDGSWESALHTFSYIKQSKGLALADMLTAFAVEFQKLDLQNKTRIALLDGLSEIEWRLSS 313
Query: 338 GCNDKLQLGSIISTFTQA 355
G N+ +Q + I Q+
Sbjct: 314 GGNESIQTSATIGVIKQS 331
>sp|P38629|RFC3_YEAST Replication factor C subunit 3 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RFC3 PE=1 SV=1
Length = 340
Score = 305 bits (780), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 152/322 (47%), Positives = 217/322 (67%), Gaps = 15/322 (4%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP++L +V +++ T+ + E +LPHLL YGPPGTGKTSTI+A+AR++YG
Sbjct: 14 PWVEKYRPETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGK 73
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFAST-QSFSFGVKASVKLVLLDEADAMTKDAQFA 160
Y NM+LELNASDDRGIDVVR QI+DFAST Q FS G KL++LDEADAMT AQ A
Sbjct: 74 NYSNMVLELNASDDRGIDVVRNQIKDFASTRQIFSKG----FKLIILDEADAMTNAAQNA 129
Query: 161 LRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDV 220
LRRVIE+YTKNTRF ++ N +K+ PAL SRCTRFRF PL + R+ +V+ E L +
Sbjct: 130 LRRVIERYTKNTRFCVLANYAHKLTPALLSRCTRFRFQPLPQEAIERRIANVLVHEKLKL 189
Query: 221 TEGGLAALVRLCNGDMRKALNILQSTHMA-----SQQITEEAVYLCTGNPLPKDIEQISY 275
+ AL+ L NGDMR+ LN+LQS +I+++ +Y C G P P D++ +
Sbjct: 190 SPNAEKALIELSNGDMRRVLNVLQSCKATLDNPDEDEISDDVIYECCGAPRPSDLKAVLK 249
Query: 276 WLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPS-DVRVRLMNDLADIEYR 334
+L + + + +++++ KGLAL+D++ + + ++ + + RV L+ LADIEY
Sbjct: 250 SILEDDWGTAHYTLNKVRSAKGLALIDLIEGIVKILEDYELQNEETRVHLLTKLADIEYS 309
Query: 335 LSFGCNDKLQ----LGSIISTF 352
+S G ND++Q +G+I ++F
Sbjct: 310 ISKGGNDQIQGSAVIGAIKASF 331
>sp|P34429|RFC5_CAEEL Probable replication factor C subunit 5 OS=Caenorhabditis elegans
GN=F44B9.8 PE=3 SV=3
Length = 368
Score = 301 bits (770), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 149/311 (47%), Positives = 200/311 (64%), Gaps = 7/311 (2%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYG- 100
PWVEKYRP L ++ AH IV T+ + LPHLL YGPPGTGKT+T+LA AR++Y
Sbjct: 30 PWVEKYRPSKLDELVAHEQIVKTLTKFIENRTLPHLLFYGPPGTGKTTTVLAAARQMYSP 89
Query: 101 AQYHNMILELNASDDRGIDVVRQQIQDFAST---QSFSFGVKASV---KLVLLDEADAMT 154
+ +M+LELNASD+RGIDVVR I +FA T Q+FS KLV+LDEADAMT
Sbjct: 90 TKMASMVLELNASDERGIDVVRNTIVNFAQTKGLQAFSTSSNTGTVPFKLVILDEADAMT 149
Query: 155 KDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIE 214
KDAQ ALRRVIEKYT N RF +ICN + I+PA+QSRCTRFRFAPL+ + RL++++E
Sbjct: 150 KDAQNALRRVIEKYTDNVRFCIICNYLASIVPAIQSRCTRFRFAPLDQKLIVPRLEYIVE 209
Query: 215 AEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQIS 274
E L +T G AL+ + GDMR +N LQST M+ ++E VY C G P PK+++++
Sbjct: 210 TEQLKMTPDGKDALLIVSKGDMRTVINTLQSTAMSFDTVSENTVYQCIGQPTPKEMKEVV 269
Query: 275 YWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYR 334
LLN+ I G AL D++ + FVF + +P + ++ L ++E
Sbjct: 270 KTLLNDPSKKCMNTIQTKLFENGYALQDVITHLHDFVFTLDIPDEAMSAIITGLGEVEEN 329
Query: 335 LSFGCNDKLQL 345
LS GC+++ QL
Sbjct: 330 LSTGCSNETQL 340
>sp|Q9HN27|RFCS_HALSA Replication factor C small subunit OS=Halobacterium salinarum
(strain ATCC 700922 / JCM 11081 / NRC-1) GN=rfcS PE=3
SV=1
Length = 322
Score = 263 bits (671), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 131/309 (42%), Positives = 196/309 (63%), Gaps = 4/309 (1%)
Query: 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 102
WVEKYRP+ L DV H DI + + + LPHLL GP GTGKT++ +++A++LYG
Sbjct: 12 WVEKYRPERLEDVVGHPDITERLQSYVDRDDLPHLLFAGPAGTGKTASSVSIAKELYGDD 71
Query: 103 YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALR 162
+ + LELNASD+RGIDVVR +I+DFA + SFG + +++ LDEADA+T DAQ ALR
Sbjct: 72 WQDNFLELNASDERGIDVVRDRIKDFARS---SFGGH-NYRVIFLDEADALTDDAQSALR 127
Query: 163 RVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTE 222
R +E+++ NTRF L CN +KII +QSRC FRFA L V L+ + E EGL+ T+
Sbjct: 128 RTMEQFSNNTRFILSCNYSSKIIDPIQSRCAVFRFAQLGDDAVAAHLREIAETEGLEHTD 187
Query: 223 GGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESF 282
G+ ALV +GDMR+A+N LQ+ + EE VY T P++IE + L F
Sbjct: 188 DGIDALVYAADGDMRRAINALQAASATGDSVNEETVYAITATARPEEIETMVTEALGGDF 247
Query: 283 ADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDK 342
A + + ++ +GLA DI+ +V V++ + VRL++ L + +YR++ G N++
Sbjct: 248 AAARATLDDLLTNRGLAGGDIIDQVHRSVWEFDVEEAAAVRLLDRLGEADYRIAEGANER 307
Query: 343 LQLGSIIST 351
+QL +++++
Sbjct: 308 VQLEALLAS 316
>sp|B0R7H7|RFCS_HALS3 Replication factor C small subunit OS=Halobacterium salinarum
(strain ATCC 29341 / DSM 671 / R1) GN=rfcS PE=3 SV=1
Length = 322
Score = 263 bits (671), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 131/309 (42%), Positives = 196/309 (63%), Gaps = 4/309 (1%)
Query: 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 102
WVEKYRP+ L DV H DI + + + LPHLL GP GTGKT++ +++A++LYG
Sbjct: 12 WVEKYRPERLEDVVGHPDITERLQSYVDRDDLPHLLFAGPAGTGKTASSVSIAKELYGDD 71
Query: 103 YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALR 162
+ + LELNASD+RGIDVVR +I+DFA + SFG + +++ LDEADA+T DAQ ALR
Sbjct: 72 WQDNFLELNASDERGIDVVRDRIKDFARS---SFGGH-NYRVIFLDEADALTDDAQSALR 127
Query: 163 RVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTE 222
R +E+++ NTRF L CN +KII +QSRC FRFA L V L+ + E EGL+ T+
Sbjct: 128 RTMEQFSNNTRFILSCNYSSKIIDPIQSRCAVFRFAQLGDDAVAAHLREIAETEGLEHTD 187
Query: 223 GGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESF 282
G+ ALV +GDMR+A+N LQ+ + EE VY T P++IE + L F
Sbjct: 188 DGIDALVYAADGDMRRAINALQAASATGDSVNEETVYAITATARPEEIETMVTEALGGDF 247
Query: 283 ADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDK 342
A + + ++ +GLA DI+ +V V++ + VRL++ L + +YR++ G N++
Sbjct: 248 AAARATLDDLLTNRGLAGGDIIDQVHRSVWEFDVEEAAAVRLLDRLGEADYRIAEGANER 307
Query: 343 LQLGSIIST 351
+QL +++++
Sbjct: 308 VQLEALLAS 316
>sp|Q0W037|RFCS_UNCMA Replication factor C small subunit OS=Uncultured methanogenic
archaeon RC-I GN=rfcS PE=3 SV=1
Length = 322
Score = 259 bits (661), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 124/310 (40%), Positives = 192/310 (61%), Gaps = 3/310 (0%)
Query: 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 102
W EKYRP+ L DV H+ I + LPHLL GPPG GKT+ +A+AR+LYG
Sbjct: 7 WTEKYRPRRLEDVIGHQQITRRLISYVKSGNLPHLLFSGPPGVGKTACAVALARELYGET 66
Query: 103 YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALR 162
+H+ +ELNASD+RGIDVVR I++FA T +A K++ LDEADA+T DAQ ALR
Sbjct: 67 WHSNFIELNASDERGIDVVRNNIKNFARTAPLG---EAKFKIIFLDEADALTSDAQSALR 123
Query: 163 RVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTE 222
R +E+Y RF + CN +KII +QSRC +RF PL +T + + + EGL + +
Sbjct: 124 RTMERYAATCRFIISCNYSSKIIEPIQSRCAVYRFGPLNATDITTGITRIAKNEGLKIEK 183
Query: 223 GGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESF 282
G+ AL+ + GDMR+A+N LQS ++ IT + +Y T PK+IE + LN F
Sbjct: 184 DGMDALIYVARGDMRRAINALQSAATIAKDITADVIYQTTSTAKPKEIEDMLKLALNGQF 243
Query: 283 ADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDK 342
DS ++ E+ + GL+ DI+ ++ +F++ + DV V L++ + + ++RL+ G +++
Sbjct: 244 MDSRNKLDELLITYGLSGTDIIDQIYRSMFELGLDEDVLVALVDRIGEADFRLTEGASER 303
Query: 343 LQLGSIISTF 352
+Q+ ++++ F
Sbjct: 304 IQIEALLAHF 313
>sp|Q5UZE5|RFCS_HALMA Replication factor C small subunit OS=Haloarcula marismortui
(strain ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809)
GN=rfcS PE=3 SV=2
Length = 325
Score = 257 bits (657), Expect = 9e-68, Method: Compositional matrix adjust.
Identities = 127/313 (40%), Positives = 194/313 (61%), Gaps = 4/313 (1%)
Query: 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 102
W+EKYRPQ+L DV H +IV + S N L H+L GP GTGKT+ A+AR+LYG
Sbjct: 16 WIEKYRPQTLDDVMGHENIVGRLKSYVSRNDLSHMLFSGPAGTGKTTCATAIARELYGDD 75
Query: 103 YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALR 162
+ LELNASD+RGIDVVR +I++FA T SFG +++ LDEADA+T DAQ ALR
Sbjct: 76 WREHFLELNASDERGIDVVRDRIKNFART---SFG-GVEYRIIFLDEADALTSDAQSALR 131
Query: 163 RVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTE 222
R +E+++ N RF L CN ++II +QSRC FRF+PL V E ++ + E +++TE
Sbjct: 132 RTMEQFSNNVRFILSCNYSSQIIDPIQSRCAVFRFSPLADDAVAEEIRTIAAEEDIELTE 191
Query: 223 GGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESF 282
GL ALV +GDMRKA+N LQ+ ++ + E AVY T P++I + L+ F
Sbjct: 192 DGLDALVYAADGDMRKAINGLQAASVSGDTVDESAVYAITSTARPEEIRTMVQSALDGDF 251
Query: 283 ADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDK 342
S + + +G+A DI+ ++ +++ + D VR++ + + +YR++ G N++
Sbjct: 252 TASRATLDRLLTEEGIAGGDIIDQLHRSIWEFDIDDDAAVRVLERIGETDYRITRGANER 311
Query: 343 LQLGSIISTFTQA 355
+QL +++++ Q
Sbjct: 312 VQLEAMLASLAQG 324
>sp|A6VJ61|RFCS_METM7 Replication factor C small subunit OS=Methanococcus maripaludis
(strain C7 / ATCC BAA-1331) GN=rfcS PE=3 SV=1
Length = 315
Score = 256 bits (653), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 122/309 (39%), Positives = 195/309 (63%), Gaps = 3/309 (0%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRPQ+L++V H +I+ + + +PHLL G PG GKT+ LA+A+ LYG
Sbjct: 4 PWVEKYRPQTLSEVVGHHEIIKRLTNYVEKKSMPHLLFSGSPGVGKTTAALALAKDLYGE 63
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFAL 161
+ LELN+SD+RGIDV+R +++DFA T+ A K++ LDE+DA+T DAQ AL
Sbjct: 64 TWRENFLELNSSDERGIDVIRTKVKDFARTKPIG---DAPFKVIFLDESDALTSDAQNAL 120
Query: 162 RRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVT 221
RR +EKY+ RF L CN +KIIP +QSRC FRF+PL+ + E LK + E E L +
Sbjct: 121 RRTMEKYSDICRFVLSCNYPSKIIPPIQSRCAIFRFSPLKTEDLVENLKEISEKENLTLE 180
Query: 222 EGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNES 281
+GG+ A++ + GDMRKA+N+LQ+ S +TEE VY P +I++++ LN
Sbjct: 181 KGGIDAIIYVSEGDMRKAINVLQTAAAVSDTVTEEIVYKVASKARPDEIKKMTQLALNGK 240
Query: 282 FADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCND 341
F +S +++ + + G++ DI+ ++ V + + +V L+ + + ++R+ G N+
Sbjct: 241 FVESREQLYNLMIDWGMSGEDILIQIFREVPNLDISEKEKVHLVEAIGECDFRIVEGSNE 300
Query: 342 KLQLGSIIS 350
++QL ++++
Sbjct: 301 RIQLSALLA 309
>sp|Q6M044|RFCS_METMP Replication factor C small subunit OS=Methanococcus maripaludis
(strain S2 / LL) GN=rfcS PE=3 SV=1
Length = 315
Score = 255 bits (651), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 122/309 (39%), Positives = 197/309 (63%), Gaps = 3/309 (0%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP++L++V H +I+ + + +PHLL G PG GKT+ LA+A+ LYG
Sbjct: 4 PWVEKYRPETLSEVVGHHEIIKRLTNYVEKKSMPHLLFSGSPGVGKTTAALALAKDLYGD 63
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFAL 161
+ LELN+SD+RGIDV+R +++DFA T+ A K++ LDE+DA+T DAQ AL
Sbjct: 64 TWRENFLELNSSDERGIDVIRTKVKDFARTKPIG---DAPFKVIFLDESDALTSDAQNAL 120
Query: 162 RRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVT 221
RR +EKY+ RF L CN +KIIP +QSRC FRF+PL+ + E LK + E E L++
Sbjct: 121 RRTMEKYSDICRFILSCNYPSKIIPPIQSRCAIFRFSPLKTEDLVENLKDISEKENLNLE 180
Query: 222 EGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNES 281
+GG+ A++ + GDMRKA+N+LQ+ S +ITEE VY P +I++++ LN
Sbjct: 181 KGGIDAIIYVSEGDMRKAINVLQTAAAVSDEITEEIVYKVASKARPDEIKKMTQLALNGK 240
Query: 282 FADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCND 341
F ++ +++ + + G++ DI+ +V V + + +V L+ + + ++R+ G N+
Sbjct: 241 FVEAREQLYNLMIDWGMSGEDILIQVFREVPNLDISEKEKVHLVEAIGECDFRIVEGSNE 300
Query: 342 KLQLGSIIS 350
++QL ++++
Sbjct: 301 RIQLSALLA 309
>sp|Q975D3|RFCS_SULTO Replication factor C small subunit OS=Sulfolobus tokodaii (strain
DSM 16993 / JCM 10545 / NBRC 100140 / 7) GN=rfcS PE=3
SV=1
Length = 327
Score = 253 bits (647), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 129/312 (41%), Positives = 198/312 (63%), Gaps = 6/312 (1%)
Query: 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 102
W EKYRP+SL D+ +DIV+ + R + +PHLL GPPGTGKT+ LA+ LYG
Sbjct: 9 WAEKYRPRSLDDIVNQKDIVERLKRFVKDKNMPHLLFSGPPGTGKTTAALALVHDLYGDN 68
Query: 103 YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALR 162
Y LELNASD+RGIDV+R ++++FA T + G K+VLLDEAD MT DAQ ALR
Sbjct: 69 YRQYFLELNASDERGIDVIRNKVKEFARTVA---GGNVPFKVVLLDEADNMTADAQQALR 125
Query: 163 RVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTE 222
R +E YT+ TRF L CN ++KII +QSR FRF PL+ V RL ++ + E ++ +
Sbjct: 126 RTMELYTETTRFILACNYLSKIIEPIQSRTALFRFYPLKKEDVVARLAYIAKNEKVEYDQ 185
Query: 223 GGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESF 282
L + + GDMRKA+NILQ++ + ++T EAVY G PK+I ++ L +F
Sbjct: 186 KALETIYDITQGDMRKAINILQASSVYG-KVTVEAVYKVLGLAQPKEIREMIMLALQGNF 244
Query: 283 ADSFKRISEMKMRKGLALVDIVREVTMFVF--KIKMPSDVRVRLMNDLADIEYRLSFGCN 340
+ +++ E+ + GL+ DI++++ V +I +P D++V L++ + ++EYR+ G +
Sbjct: 245 LKAREKLRELLVNYGLSGEDIIKQIHREVTGNEINIPDDLKVLLVDYIGEVEYRIMEGAD 304
Query: 341 DKLQLGSIISTF 352
D++QL ++++
Sbjct: 305 DEIQLNALLAKL 316
>sp|A4FZ74|RFCS_METM5 Replication factor C small subunit OS=Methanococcus maripaludis
(strain C5 / ATCC BAA-1333) GN=rfcS PE=3 SV=1
Length = 315
Score = 253 bits (645), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 121/309 (39%), Positives = 195/309 (63%), Gaps = 3/309 (0%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP++L +V H +I+ + + +PHLL G PG GKT+ LA+A+ LYG
Sbjct: 4 PWVEKYRPETLPEVVGHHEIIKRLTNYVEKKSMPHLLFSGSPGVGKTTAALALAKDLYGE 63
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFAL 161
+ LELN+SD+RGIDV+R +++DFA T+ A K++ LDE+DA+T DAQ AL
Sbjct: 64 TWRENFLELNSSDERGIDVIRTKVKDFARTKPIG---DAPFKVIFLDESDALTSDAQNAL 120
Query: 162 RRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVT 221
RR +EKY+ RF L CN +KIIP +QSRC FRF+PL+ + E LK + E E L +
Sbjct: 121 RRTMEKYSDICRFILSCNYPSKIIPPIQSRCAIFRFSPLKTEDLVENLKDISEKETLTLE 180
Query: 222 EGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNES 281
+GG+ A++ + GDMRKA+N+LQ+ S +TEE VY P +I+++++ LN
Sbjct: 181 KGGIDAIIYVSEGDMRKAINVLQTAAAVSDTVTEEIVYKVASKARPDEIKKMTHLALNGK 240
Query: 282 FADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCND 341
F ++ +++ + + G++ DI+ +V V + + +V L+ + + ++R+ G N+
Sbjct: 241 FVEAKEQLYNLMIDWGMSGEDILIQVFREVPNLDISEKEKVHLVEAIGECDFRIVEGSNE 300
Query: 342 KLQLGSIIS 350
++QL ++++
Sbjct: 301 RIQLSALLA 309
>sp|A9A6K6|RFCS_METM6 Replication factor C small subunit OS=Methanococcus maripaludis
(strain C6 / ATCC BAA-1332) GN=rfcS PE=3 SV=1
Length = 315
Score = 251 bits (640), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 121/309 (39%), Positives = 194/309 (62%), Gaps = 3/309 (0%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP++L +V H +I+ + + +PHLL G PG GKT+ LA+A+ LYG
Sbjct: 4 PWVEKYRPETLPEVVGHHEIIKRLTNYVEKKSMPHLLFSGSPGVGKTTAALALAKDLYGD 63
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFAL 161
+ LELN+SD+RGIDV+R +++DFA T+ A K++ LDE+DA+T DAQ AL
Sbjct: 64 TWRENFLELNSSDERGIDVIRTKVKDFARTKPIG---DAPFKVIFLDESDALTSDAQNAL 120
Query: 162 RRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVT 221
RR +EKY+ RF L CN +KIIP +QSRC FRF+PL+ + E LK + E E L +
Sbjct: 121 RRTMEKYSDICRFILSCNYPSKIIPPIQSRCAIFRFSPLKTEDLVENLKDISEKETLTLE 180
Query: 222 EGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNES 281
+GG+ A++ + GDMRKA+N+LQ+ S +TEE VY P +I++++ LN
Sbjct: 181 KGGIDAIIYVSEGDMRKAINVLQTAAAVSDTVTEEIVYKVASKARPDEIKKMTQLALNGK 240
Query: 282 FADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCND 341
F ++ +++ + + G++ DI+ +V V + + +V L+ + + ++R+ G N+
Sbjct: 241 FVEAREQLYNLMIDWGMSGEDILIQVFREVPNLDISEKEKVHLVEAIGECDFRIVEGSNE 300
Query: 342 KLQLGSIIS 350
++QL ++++
Sbjct: 301 RIQLSALLA 309
>sp|A3DNV9|RFCS_STAMF Replication factor C small subunit OS=Staphylothermus marinus
(strain ATCC 43588 / DSM 3639 / F1) GN=rfcS PE=3 SV=1
Length = 329
Score = 249 bits (636), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 128/310 (41%), Positives = 196/310 (63%), Gaps = 6/310 (1%)
Query: 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 102
W EKYRP++L ++ +IV + + E +PHLL GPPGTGKT+ +A L+G
Sbjct: 13 WAEKYRPKTLDEIVDQEEIVSRLKQFVKERNMPHLLFAGPPGTGKTTAAHCLAHDLFGEN 72
Query: 103 YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALR 162
Y +LELNASD+RGIDV+R ++++FA T+ K+VLLDEAD MT DAQ ALR
Sbjct: 73 YRQYMLELNASDERGIDVIRSKVKEFARTR---VAANIPFKIVLLDEADNMTADAQQALR 129
Query: 163 RVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTE 222
R++E YT TRF LI N +KII +QSRC FRFAPL+ V RLK + E E +++ E
Sbjct: 130 RLMEMYTATTRFILIANYPSKIIEPIQSRCAVFRFAPLKKEDVISRLKWIAEQEKVEIDE 189
Query: 223 GGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESF 282
L A+ L GDMR+A+NILQ+ A ++T ++VY G P++I Q+ L +F
Sbjct: 190 EALEAIHDLSEGDMRRAINILQAA-AALGKVTVDSVYKVVGLAHPREIRQMIQLALAGNF 248
Query: 283 ADSFKRISEMKMRKGLALVDIVREVTMFVFK--IKMPSDVRVRLMNDLADIEYRLSFGCN 340
D+ +++ E+ + GL+ VD++++V +F IK+P + ++ + + +I++RL G +
Sbjct: 249 NDAREKLRELMINYGLSGVDVIKQVHREIFSTDIKIPDEFKIIIADLAGEIQFRLVEGAD 308
Query: 341 DKLQLGSIIS 350
D++QL + ++
Sbjct: 309 DEIQLNAFLA 318
>sp|Q9YBS7|RFCS_AERPE Replication factor C small subunit OS=Aeropyrum pernix (strain ATCC
700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1)
GN=rfcS PE=3 SV=3
Length = 325
Score = 248 bits (633), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 125/313 (39%), Positives = 196/313 (62%), Gaps = 6/313 (1%)
Query: 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 102
WVEKYRP+SL D+ + +V+ + + + +PHLL GPPGTGKT+ A+A L+G
Sbjct: 9 WVEKYRPRSLDDIVDQKHVVERLKQFVKQRNMPHLLFAGPPGTGKTTAAHALAHDLFGEN 68
Query: 103 YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALR 162
Y +LELNASD+RGI+V+R+++++FA +++ + K+VLLDEAD MT DAQ ALR
Sbjct: 69 YRQYMLELNASDERGINVIREKVKEFARSRT---PPEIPFKIVLLDEADNMTSDAQQALR 125
Query: 163 RVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTE 222
R++E Y+ TRF LI N +KII +QSRC FRF PL V ERL+++ E EG+D E
Sbjct: 126 RLMELYSSVTRFILIANYPSKIIDPIQSRCAFFRFQPLSKQDVIERLRYIAENEGVDYEE 185
Query: 223 GGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESF 282
L A+ + GDMRKA+N+LQ+ ++T +AVY G P+++ ++ L F
Sbjct: 186 EALDAIYEISEGDMRKAINVLQAASYLG-KVTVDAVYRVVGMAKPREVREMLATALKGDF 244
Query: 283 ADSFKRISEMKMRKGLALVDIVREV--TMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCN 340
+ + ++ + G++ D+ R++ +F ++KMP ++RV + L ++ YRL G +
Sbjct: 245 TAARSLLRKIMIEYGMSGEDVARQIHRELFSTELKMPEELRVLAADYLGEVHYRLVEGSD 304
Query: 341 DKLQLGSIISTFT 353
D +QL + ++ T
Sbjct: 305 DDIQLSAFLAWLT 317
>sp|A6US36|RFCS_METVS Replication factor C small subunit OS=Methanococcus vannielii
(strain SB / ATCC 35089 / DSM 1224) GN=rfcS PE=3 SV=1
Length = 315
Score = 246 bits (628), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 115/309 (37%), Positives = 195/309 (63%), Gaps = 3/309 (0%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP++L +V H++I+ + + +PHLL G PG GKT+ L +A+ LYG
Sbjct: 4 PWVEKYRPENLDEVVGHQEIIKRLKNYVEKKSMPHLLFSGSPGVGKTTAALCLAKDLYGN 63
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFAL 161
+ LELN+SD+RGIDV+R +++DFA T+ A K++ LDE+DA+T DAQ AL
Sbjct: 64 TWKENFLELNSSDERGIDVIRTKVKDFARTKPIG---DAPFKVIFLDESDALTSDAQNAL 120
Query: 162 RRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVT 221
RR +EKY+ RF L CN +KIIP +QSRC FRF+PL+ + + LK + E E ++V
Sbjct: 121 RRTMEKYSDICRFVLSCNYPSKIIPPIQSRCAIFRFSPLKTEDLVKNLKEISEKESINVE 180
Query: 222 EGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNES 281
+ G+ A++ + GDMRKA+N+LQ+ S+ I E +Y P +I++++ LN
Sbjct: 181 KSGMDAIIYVSEGDMRKAINVLQTGAAVSKNINETVIYKVASKARPDEIKKMTELALNGK 240
Query: 282 FADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCND 341
F ++ +++ ++ + G++ DI+ ++ V +++ +V L+ + + ++R+ G N+
Sbjct: 241 FVEAREQLYKLMIDWGMSGEDIIIQIFREVPNLEISEKEKVHLVEAIGECDFRIVEGANE 300
Query: 342 KLQLGSIIS 350
++QL ++++
Sbjct: 301 RIQLSALLA 309
>sp|Q4JAB0|RFCS_SULAC Replication factor C small subunit OS=Sulfolobus acidocaldarius
(strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 /
NCIMB 11770) GN=rfcS PE=3 SV=1
Length = 325
Score = 243 bits (620), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 124/310 (40%), Positives = 194/310 (62%), Gaps = 6/310 (1%)
Query: 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 102
W EKYRP+SL ++ ++IV+ + + E +PHLL GPPGTGKT+ LA+ R LYG
Sbjct: 7 WAEKYRPKSLDEIVNQKEIVERLKKFVKEKNMPHLLFAGPPGTGKTTAALALVRDLYGNN 66
Query: 103 YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALR 162
Y LELNASD+RGIDV+R ++++FA T + + K++LLDEAD MT DAQ ALR
Sbjct: 67 YRQYFLELNASDERGIDVIRNKVKEFARTVASN---NVPFKVILLDEADNMTADAQQALR 123
Query: 163 RVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTE 222
R +E YT+ TRF L CN ++KII +QSR FRF PL+ V RL + + E ++
Sbjct: 124 RTMELYTETTRFILACNYLSKIIEPIQSRTALFRFYPLKKEDVVNRLIQIAKNEKVEFDP 183
Query: 223 GGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESF 282
G+ + + GDMRKA+N++Q+ A +IT E VY G PK+I ++ + L+ F
Sbjct: 184 KGIETIFDITQGDMRKAINVIQAAS-AYGKITVETVYKVLGLAQPKEIREMLHLALSGKF 242
Query: 283 ADSFKRISEMKMRKGLALVDIVREV--TMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCN 340
+ ++ E+ + GL+ DI+++V + +I +P D++V L++ ++E+R+ G +
Sbjct: 243 LQARDKLRELLINYGLSGEDIIKQVHKELTGNEISIPDDLKVILVDYAGEVEFRIMEGAD 302
Query: 341 DKLQLGSIIS 350
D++QL + ++
Sbjct: 303 DEIQLSAFLA 312
>sp|O28219|RFCS_ARCFU Replication factor C small subunit OS=Archaeoglobus fulgidus
(strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC
100126) GN=rfcS PE=1 SV=1
Length = 319
Score = 243 bits (620), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 115/311 (36%), Positives = 193/311 (62%), Gaps = 3/311 (0%)
Query: 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 102
WVEKYRP++L +V +++ + +PHLL GPPGTGKT+T +A+AR L+G
Sbjct: 7 WVEKYRPRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGEN 66
Query: 103 YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALR 162
+ + +E+NASD+RGIDVVR +I++FA T A K++ LDEADA+T DAQ ALR
Sbjct: 67 WRDNFIEMNASDERGIDVVRHKIKEFARTAPIG---GAPFKIIFLDEADALTADAQAALR 123
Query: 163 RVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTE 222
R +E Y+K+ RF L CN V++II +QSRC FRF P+ + +RL + E EG+ +TE
Sbjct: 124 RTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEKEGVKITE 183
Query: 223 GGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESF 282
GL AL+ + GD RKA+N LQ + + + +Y T P+++ ++ L +F
Sbjct: 184 DGLEALIYISGGDFRKAINALQGAAAIGEVVDADTIYQITATARPEEMTELIQTALKGNF 243
Query: 283 ADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDK 342
++ + + + + G++ DIV ++ + + + ++V+L++ L ++++RL+ G N++
Sbjct: 244 MEARELLDRLMVEYGMSGEDIVAQLFREIISMPIKDSLKVQLIDKLGEVDFRLTEGANER 303
Query: 343 LQLGSIISTFT 353
+QL + ++ +
Sbjct: 304 IQLDAYLAYLS 314
>sp|A5UMF3|RFCS_METS3 Replication factor C small subunit OS=Methanobrevibacter smithii
(strain PS / ATCC 35061 / DSM 861) GN=rfcS PE=3 SV=1
Length = 315
Score = 240 bits (613), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 120/317 (37%), Positives = 189/317 (59%), Gaps = 8/317 (2%)
Query: 40 ASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLY 99
+ PWVEKYRPQ+L D+ + IV+ + + E +P+L+ GP G GKT+T +A+ + +
Sbjct: 2 SGPWVEKYRPQNLDDIIGQKQIVNRLQKYVGEESMPNLMFTGPAGVGKTTTAIALVKAIL 61
Query: 100 GAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQF 159
G + LELNASD RGID VR I++F + V A +++ LDE D MTKDAQ
Sbjct: 62 GEYWRQNFLELNASDARGIDTVRNDIKNFCRLKP----VGAPFRIIFLDEVDNMTKDAQH 117
Query: 160 ALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLD 219
ALRR +E YTK F L CN +KII +QSRC FRF P++ + RLK++ +E +
Sbjct: 118 ALRREMEMYTKTASFILSCNYSSKIIDPIQSRCAIFRFGPIKGEEIANRLKYICTSERFE 177
Query: 220 VTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLN 279
T+GG+ A+ GDMRKA+N+LQ+ +Q+ E+AVY P+D+ + L+
Sbjct: 178 YTDGGIEAIEYFAEGDMRKAVNVLQAAASEGKQVDEDAVYEVVSKAKPQDVHNLITKALS 237
Query: 280 ESFADSFKRISEMKMRKGLALVDIV----REVTMFVFKIKMPSDVRVRLMNDLADIEYRL 335
F + + E + +G + D+V ++V+ VF+ KM +D+ + L+ +AD ++R+
Sbjct: 238 GDFMGARNLLRETMVLQGTSGEDMVSQIYQDVSKRVFEGKMEADIYIDLIEAIADCDFRI 297
Query: 336 SFGCNDKLQLGSIISTF 352
G N ++QL ++++ F
Sbjct: 298 REGANPRIQLEALLTQF 314
>sp|Q3ITJ2|RFCS_NATPD Replication factor C small subunit OS=Natronomonas pharaonis
(strain DSM 2160 / ATCC 35678) GN=rfcS PE=3 SV=1
Length = 325
Score = 239 bits (610), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 118/298 (39%), Positives = 185/298 (62%), Gaps = 4/298 (1%)
Query: 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 102
W+EKYRPQ+L D+ H I + + + ++N LPHLL GP G GKT+ A+A+++YG
Sbjct: 14 WIEKYRPQTLDDIVGHESITERLKQYIAQNDLPHLLFAGPAGVGKTTAATAIAKEVYGDD 73
Query: 103 YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALR 162
+ LELNASD RGIDVVR +I+ FA SFG +++ LDEADA+T DAQ ALR
Sbjct: 74 WRENFLELNASDQRGIDVVRDRIKSFARA---SFG-GYDHRIIFLDEADALTSDAQSALR 129
Query: 163 RVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTE 222
R +E+++ NTRF L CN ++II +QSRC FRF+PL V E+++ + + EG+++T+
Sbjct: 130 RTMEQFSDNTRFILSCNYSSQIIDPIQSRCAVFRFSPLGDAAVDEQIRIIADTEGIELTD 189
Query: 223 GGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESF 282
G+ ALV +GDMRKA+N LQ+ + + EEAVY T P++I ++ ++ F
Sbjct: 190 DGVDALVYAADGDMRKAINGLQAAAVMGGTVDEEAVYTITSTARPEEIREMVTEAMDGDF 249
Query: 283 ADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCN 340
+ ++ + G+A DI+ ++ V++ + V+LM + + +YR++ G +
Sbjct: 250 TAARSQLETLLTDVGIAGGDIIDQLHRSVWEFDLEEREAVQLMERIGEADYRITAGAS 307
>sp|A1RSA2|RFCS1_PYRIL Replication factor C small subunit 1 OS=Pyrobaculum islandicum
(strain DSM 4184 / JCM 9189) GN=rfcS1 PE=3 SV=1
Length = 329
Score = 238 bits (606), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 124/322 (38%), Positives = 193/322 (59%), Gaps = 5/322 (1%)
Query: 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 102
W EKYRP+S +V ++ + +PHLL YGPPGTGKT+ L +AR+LYG
Sbjct: 6 WFEKYRPRSFDEVVDLEEVKSRLREFVKSGNMPHLLFYGPPGTGKTTMALVLARELYGEY 65
Query: 103 YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALR 162
+ LELNASD+RGI+V+R+++++FA T KA KLV+LDEAD MT DAQ ALR
Sbjct: 66 WRENTLELNASDERGINVIRERVKEFARTAPVG---KAPFKLVILDEADNMTSDAQQALR 122
Query: 163 RVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHV-TERLKHVIEAEGLDVT 221
R++E Y +NTRF L+ N V++II + SRC FRF+P+ P H+ ERLK++ ++EG++V
Sbjct: 123 RIMEIYAQNTRFILLANYVSRIIDPIISRCAVFRFSPM-PRHLMAERLKYIAKSEGVEVK 181
Query: 222 EGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNES 281
E + + L GDMRKA+NILQ ++ + V P DI ++ L+
Sbjct: 182 EDAIDLIYELSEGDMRKAINILQVAAATNKIVDRNVVAAAAAAIRPTDIVELFNLALSGD 241
Query: 282 FADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCND 341
+ + +++ E+ KG+A VD +R + ++ + + + + LAD++YRL+ G ++
Sbjct: 242 YLKAREKMRELMYVKGVAGVDFIRAFQRELIRMSLDDETKAEVAELLADVDYRLTQGADE 301
Query: 342 KLQLGSIISTFTQARSAIVAAA 363
++QL ++ I AA+
Sbjct: 302 EIQLSYFLAKLGSIGKKIRAAS 323
>sp|A1RWU7|RFCS_THEPD Replication factor C small subunit OS=Thermofilum pendens (strain
Hrk 5) GN=rfcS PE=3 SV=1
Length = 325
Score = 236 bits (601), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 124/313 (39%), Positives = 184/313 (58%), Gaps = 6/313 (1%)
Query: 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 102
WVEKYRP+SL ++ +IV + +PHLL GPPGTGKT+ LA+A LYG
Sbjct: 6 WVEKYRPRSLDEIVDQEEIVKRLKEFVKNKNMPHLLFAGPPGTGKTTAALALAHDLYGES 65
Query: 103 YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALR 162
+ + LELNASD+RGIDV+R +I+D+A T KLV+LDEAD MT DAQ ALR
Sbjct: 66 WRDNTLELNASDERGIDVIRSRIKDYARTLPIG---DVPFKLVILDEADNMTGDAQQALR 122
Query: 163 RVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTE 222
R +E +++NTRF LI N +KII +QSRC FRF PL +RL+ + + EG+ V +
Sbjct: 123 RTMELFSRNTRFILIANYASKIIEPIQSRCAVFRFQPLPKGDAFQRLRWIAQQEGITVDD 182
Query: 223 GGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESF 282
G L A+ GD+RKA+N LQ+ S+ +TEE VY G PK++ ++ L +
Sbjct: 183 GALEAIWEESQGDLRKAINTLQAASAISRNVTEEVVYAALGRVKPKEVREMIESALKGNL 242
Query: 283 ADSFKRISEMKMRKGLALVDIVREVTMFVF---KIKMPSDVRVRLMNDLADIEYRLSFGC 339
++ ++ + GL+ VDI+R + V +++ L+ + + YR+ G
Sbjct: 243 LEARDKLRLLLYNYGLSGVDIIRFIHREVLSQKSVRLDDATLAELLVLVGETNYRIVEGS 302
Query: 340 NDKLQLGSIISTF 352
+D++QL +++S
Sbjct: 303 DDEIQLMALLSKL 315
>sp|Q9UXF5|RFCS_SULSO Replication factor C small subunit OS=Sulfolobus solfataricus
(strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) GN=rfcS
PE=1 SV=1
Length = 330
Score = 235 bits (599), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 123/310 (39%), Positives = 191/310 (61%), Gaps = 6/310 (1%)
Query: 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 102
W EKYRP++L D+ R+I+D + + E +PHLL GPPGTGKT+ LA+ LYG
Sbjct: 10 WAEKYRPKTLDDIVNQREIIDRLKKFVKEKNMPHLLFAGPPGTGKTTAALALVHDLYGDN 69
Query: 103 YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALR 162
Y LELNASD+RGIDV+R ++++FA T K+VLLDEAD MT DAQ ALR
Sbjct: 70 YTEYFLELNASDERGIDVIRNKVKEFART---VIPGDIPFKVVLLDEADNMTADAQQALR 126
Query: 163 RVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTE 222
R +E YT+NTRF L CN ++KII +QSR FRF PL+ V RL ++ + E + +
Sbjct: 127 RTMELYTENTRFILACNYLSKIIEPIQSRTALFRFYPLKKEDVVNRLIYIAKNEKAEYDQ 186
Query: 223 GGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESF 282
L + + GDMRK++NILQ+ A +I+ EAV+ G PK++ ++ L F
Sbjct: 187 KALETIYDITMGDMRKSINILQAAS-AYGKISVEAVFKVLGLAQPKEVREMINLALQGKF 245
Query: 283 ADSFKRISEMKMRKGLALVDIVREVTMFVF--KIKMPSDVRVRLMNDLADIEYRLSFGCN 340
+ ++ + + GL+ DIV+++ + +I++ ++RV L++ + + E+R+ G +
Sbjct: 246 TQARDKLRTLLITYGLSGEDIVKQIHREITSSEIQISEELRVLLLDYIGETEFRIIEGAD 305
Query: 341 DKLQLGSIIS 350
D++QL ++++
Sbjct: 306 DEIQLSALLA 315
>sp|Q8ZYK4|RFCS1_PYRAE Replication factor C small subunit 1 OS=Pyrobaculum aerophilum
(strain ATCC 51768 / IM2 / DSM 7523 / JCM 9630 / NBRC
100827) GN=rfcS1 PE=3 SV=1
Length = 329
Score = 231 bits (589), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 118/308 (38%), Positives = 187/308 (60%), Gaps = 3/308 (0%)
Query: 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 102
W EKYRP+S +V ++ + +PHLL YGPPGTGKT+ L +AR+LYG
Sbjct: 6 WFEKYRPRSFDEVVDLEEVKARLREFVKAGNMPHLLFYGPPGTGKTTMALVLARELYGEY 65
Query: 103 YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALR 162
+ LELNASD+RGI+V+R+++++FA T KA KLV+LDEAD MT DAQ ALR
Sbjct: 66 WRENTLELNASDERGINVIRERVKEFARTAPVG---KAPFKLVILDEADNMTSDAQQALR 122
Query: 163 RVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTE 222
R++E Y +NTRF L+ N V++II + SRC FRF+P+ + ERLK + + EG+++ E
Sbjct: 123 RIMEIYAQNTRFILLANYVSRIIDPIISRCAVFRFSPMPRSLMAERLKFIAKNEGVELRE 182
Query: 223 GGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESF 282
+ + L GDMRKA+N+LQ ++ + AV P DI ++ ++ F
Sbjct: 183 DAINMIYELSEGDMRKAINLLQVAAATNKVVDANAVASAAIAVRPADIIELFNLAISGDF 242
Query: 283 ADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDK 342
+ +++ E+ KG+A D +R + ++ + D++ + LAD++YRL+ G +++
Sbjct: 243 VKAREKLRELMYLKGIAGADFIRAFQRELIRMPIDDDIKAEIAELLADVDYRLTQGADEE 302
Query: 343 LQLGSIIS 350
+QL +++
Sbjct: 303 IQLTYLLT 310
>sp|A3CUX9|RFCS_METMJ Replication factor C small subunit OS=Methanoculleus marisnigri
(strain ATCC 35101 / DSM 1498 / JR1) GN=rfcS PE=3 SV=1
Length = 322
Score = 231 bits (588), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 117/313 (37%), Positives = 188/313 (60%), Gaps = 3/313 (0%)
Query: 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 102
W+EKYRP+ L ++ +DIV + LPHLL G G GKT+ +A+AR+ +G
Sbjct: 8 WIEKYRPRRLDEMVGQKDIVVRLQSYVKTGNLPHLLFTGSAGIGKTTAAVALAREFFGDS 67
Query: 103 YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALR 162
+ E+NASD+RGIDVVR QI++FA T + A+ K++ LDEADA+T DAQ ALR
Sbjct: 68 WQTNFREMNASDERGIDVVRNQIKEFARTSPLA---GATFKILFLDEADALTTDAQAALR 124
Query: 163 RVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTE 222
R +E Y + RF L CN +KII +QSRC +RF PL+ V E + + AEGL VTE
Sbjct: 125 RTMETYARTCRFILSCNYSSKIIDPIQSRCAIYRFRPLDREAVIEETRRIAAAEGLTVTE 184
Query: 223 GGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESF 282
G L A+V + +GDMRKA+N LQ + I EE ++ T P++I+++ + F
Sbjct: 185 GALDAIVYVASGDMRKAINALQGAAILRTDIDEETIFEITATARPEEIDELLDLSIGGRF 244
Query: 283 ADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDK 342
++ + + E+ +G+A +++ + + + + ++V+L++ L + ++RLS G +
Sbjct: 245 DEAEQALLELTHVRGIAPNELINQCYRALVQRDIDRTLKVKLIDALGETDFRLSEGASSD 304
Query: 343 LQLGSIISTFTQA 355
+Q+ ++++ F A
Sbjct: 305 IQMEALLARFVLA 317
>sp|O26343|RFCS_METTH Replication factor C small subunit OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=rfcS PE=1 SV=1
Length = 321
Score = 231 bits (588), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 118/321 (36%), Positives = 188/321 (58%), Gaps = 8/321 (2%)
Query: 38 IKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARK 97
I PWVEKYRPQ L D+ I+ + R E +P+L+ GP G GKT+ LA+AR+
Sbjct: 3 IMNGPWVEKYRPQKLDDIVGQEHIIPRLKRYVEEKSMPNLMFTGPAGVGKTTAALALARE 62
Query: 98 LYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDA 157
+ G + LELNASD RGID VR I++F + V A +++ LDE D MTKDA
Sbjct: 63 ILGEYWRQNFLELNASDARGIDTVRTSIKNFCRLKP----VGAPFRIIFLDEVDNMTKDA 118
Query: 158 QFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEG 217
Q ALRR +E YTK + F L CN +KII +QSRC FRF PL+ + +RL+++ E E
Sbjct: 119 QHALRREMEMYTKTSSFILSCNYSSKIIDPIQSRCAIFRFLPLKGHQIIKRLEYIAEKEN 178
Query: 218 LDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWL 277
L+ L +V GD+RKA+N+LQS ++ITE ++Y PKD+ ++ +
Sbjct: 179 LEYEAHALETIVYFAEGDLRKAINLLQSAASLGEKITESSIYDVVSRARPKDVRKMIKTI 238
Query: 278 LNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDV----RVRLMNDLADIEY 333
L+ F ++ + E+ + +G++ D+V ++ + ++ M +V V L++ + + ++
Sbjct: 239 LDGKFMEARDMLREIMVLQGISGEDMVTQIYQELSRLAMEGEVDGDRYVGLIDAIGEYDF 298
Query: 334 RLSFGCNDKLQLGSIISTFTQ 354
R+ G N ++QL ++++ F +
Sbjct: 299 RIREGANPRIQLEALLARFLE 319
>sp|A4WGV2|RFCS1_PYRAR Replication factor C small subunit 1 OS=Pyrobaculum arsenaticum
(strain DSM 13514 / JCM 11321) GN=rfcS1 PE=3 SV=1
Length = 329
Score = 230 bits (587), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 114/300 (38%), Positives = 183/300 (61%), Gaps = 3/300 (1%)
Query: 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 102
W EKYRP+S +V ++ + +PHLL YGPPGTGKT+ L +AR+LYG
Sbjct: 6 WFEKYRPRSFDEVVDLEEVKARLREFVRGGNMPHLLFYGPPGTGKTTMALVLARELYGEY 65
Query: 103 YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALR 162
+ LELNASD+RGI+V+R+++++FA T KA KLV+LDEAD MT DAQ ALR
Sbjct: 66 WRENTLELNASDERGINVIRERVKEFARTAPVG---KAPFKLVILDEADNMTSDAQQALR 122
Query: 163 RVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTE 222
R++E Y +NTRF L+ N V++II + SRC FRF+P+ + ERL+H+ ++EG+++ +
Sbjct: 123 RIMEMYAQNTRFILLANYVSRIIDPIISRCAVFRFSPMPRSLMAERLRHIAKSEGIELRD 182
Query: 223 GGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESF 282
+ + + GDMRKA+N+LQ S+ + AV T P D+ ++ N
Sbjct: 183 DAIDLIYEVSEGDMRKAINLLQVAAATSKVVDANAVASATTMIRPADVVELFNLAFNGDV 242
Query: 283 ADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDK 342
+ +++ E+ KG+A +D +R + ++ + +V+ + LA+++YRL+ G +++
Sbjct: 243 TKAREKLRELMYVKGIAGIDFIRAFQRELIRMPLDDEVKAEIAELLAEVDYRLTQGSDEE 302
>sp|A7I8Y0|RFCS_METB6 Replication factor C small subunit OS=Methanoregula boonei (strain
6A8) GN=rfcS PE=3 SV=1
Length = 322
Score = 230 bits (586), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 122/313 (38%), Positives = 180/313 (57%), Gaps = 3/313 (0%)
Query: 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 102
W+EKYRP LAD+ DIV+ + LPHLL G G GKT+ + +AR+ +G
Sbjct: 8 WIEKYRPAKLADIVGQDDIVERLSSYVKSGNLPHLLFTGSAGVGKTTAAVTLAREFFGDS 67
Query: 103 YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALR 162
+ ELNASD+RGIDVVR QI++FA T+ A+ K++ LDEADA+T DAQ ALR
Sbjct: 68 WQMNFRELNASDERGIDVVRNQIKEFARTRPAG---DAAFKILFLDEADALTTDAQAALR 124
Query: 163 RVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTE 222
R +E Y K RF L CN +KII +QSRC +RF PL P V E + + E LDVT
Sbjct: 125 RTMESYAKTCRFILSCNYSSKIIDPIQSRCAIYRFRPLGPQAVKEEITRIAAREHLDVTP 184
Query: 223 GGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESF 282
+ A+V + GDMRKA+N LQ + S I VY T N P++I ++ L+ F
Sbjct: 185 EAMDAMVYIAQGDMRKAINALQGAAILSATIEAPMVYAITSNARPEEIGELLTLSLSGDF 244
Query: 283 ADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDK 342
+ ++ + +G+A +++ + + K M ++V L++ L + ++RLS G +
Sbjct: 245 DGAEALLTRLLRERGIAPNELINQCYRALTKRDMDRVLKVELIDALGETDFRLSEGASSD 304
Query: 343 LQLGSIISTFTQA 355
+Q+ ++I+ F A
Sbjct: 305 IQMEALIARFVLA 317
>sp|P60374|RFCS_NANEQ Replication factor C small subunit OS=Nanoarchaeum equitans (strain
Kin4-M) GN=rfcS PE=3 SV=1
Length = 322
Score = 229 bits (584), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 113/310 (36%), Positives = 192/310 (61%), Gaps = 5/310 (1%)
Query: 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 102
W EKYRP+ + D+ +I + + +PHLL GPPGTGKT+ LA+A +LYG
Sbjct: 4 WTEKYRPKRIDDIINQEEIKKALKSFVEKKNMPHLLFAGPPGTGKTTAALALAHELYGDA 63
Query: 103 YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALR 162
+ LELNASD+RGIDV+R ++++FA + K+V LDEADA+T+DAQ ALR
Sbjct: 64 WRENFLELNASDERGIDVIRHKVKEFARAKPIG---DVPFKIVFLDEADALTRDAQQALR 120
Query: 163 RVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEG--LDV 220
R++EKY+++TRF L CN +KII +QSR T F+F PLE E + +++ EG L+
Sbjct: 121 RIMEKYSQSTRFILSCNYFSKIIEPIQSRVTVFKFKPLEKEAFRELINRIVKGEGLILEN 180
Query: 221 TEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNE 280
+ + AL + GD+RKA+NILQ+ M S+ IT + +Y PK+I+++ +
Sbjct: 181 EDEIINALYDIAEGDLRKAINILQAAAMMSKTITVDRLYEIASIAKPKEIDEVLNKAMQG 240
Query: 281 SFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCN 340
+F ++ + ++ ++ G++ D+++ + V+ + + ++ +++ + DIE+R+ G +
Sbjct: 241 NFLEARSMLIDLMLKYGMSGEDVIKAIQKRVWSLPISDREKLMILDKIGDIEFRIVEGAD 300
Query: 341 DKLQLGSIIS 350
D +QL ++++
Sbjct: 301 DLVQLDALLA 310
>sp|Q2NH89|RFCS_METST Replication factor C small subunit OS=Methanosphaera stadtmanae
(strain DSM 3091) GN=rfcS PE=3 SV=1
Length = 321
Score = 229 bits (584), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 123/316 (38%), Positives = 188/316 (59%), Gaps = 8/316 (2%)
Query: 41 SPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYG 100
+PWVEKYRPQ+L DV IV + R E LP+++ G G GKT+ LA+A+ L G
Sbjct: 3 TPWVEKYRPQTLDDVVGQEQIVGRLKRYVEEKSLPNIMFTGFAGVGKTTCALALAKSLLG 62
Query: 101 AQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFA 160
+ LELNASD RGID VR +I+ F ++ V A +++ LDE D MTKDAQ A
Sbjct: 63 EYWQQNFLELNASDARGIDTVRNEIKSFCKLKA----VGAPFRIIFLDEVDNMTKDAQQA 118
Query: 161 LRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDV 220
LRR +E YTK + F L CN +KII +QSRC FRF+P++ ++ +RLK++ EG++
Sbjct: 119 LRREMEMYTKTSSFILSCNYSSKIIDPIQSRCAIFRFSPIKAANIIKRLKYIASEEGIEA 178
Query: 221 TEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNE 280
+ L +V GDMRK++NILQ++ +TEEAVY PKD+ +I LN
Sbjct: 179 EQSALENIVYFTQGDMRKSINILQASTTTENTVTEEAVYDVISRAKPKDVRKIINKALNH 238
Query: 281 SFADSFKRISEMKMRKGLALVDIV----REVTMFVFKIKMPSDVRVRLMNDLADIEYRLS 336
F ++ + ++ + +G++ D++ +EV + +P ++LM +++ +YR+
Sbjct: 239 DFMEARDLLRDIMIIEGVSGDDLITQFYQEVAQMTQEELIPEVEFIKLMEYMSECDYRIR 298
Query: 337 FGCNDKLQLGSIISTF 352
G N +LQL +++S F
Sbjct: 299 EGSNPRLQLEALLSKF 314
>sp|Q54MD4|RFC4_DICDI Probable replication factor C subunit 4 OS=Dictyostelium discoideum
GN=rfc4 PE=3 SV=1
Length = 347
Score = 228 bits (580), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 123/312 (39%), Positives = 188/312 (60%), Gaps = 9/312 (2%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWV KYRP+++ DV+ D++ + + + LPHLL YGPPGTGKTSTILA+A +YG
Sbjct: 11 PWVAKYRPKTVDDVSYQEDVISALKKSLNTGNLPHLLFYGPPGTGKTSTILAIAMDIYGP 70
Query: 102 QYHNM-ILELNASDDRGIDVVRQQIQDFAS-----TQSFSFGVKASVKLVLLDEADAMTK 155
+ +LELNASD+RGI+VVR +I++FA T + + A+ KL++LDEAD+MT
Sbjct: 71 ELMKQRVLELNASDERGIEVVRTKIKNFAGYAVNKTTTGTSNPGATFKLIILDEADSMTT 130
Query: 156 DAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEA 215
DAQ ALRR IE +K TRF L+CN +++II L SRC +FRF PL+ V ERLK + +
Sbjct: 131 DAQAALRRTIETTSKTTRFCLLCNYISRIIDPLASRCAKFRFKPLDTVATIERLKFISQQ 190
Query: 216 EGLDVTEGGLAALVRLCNGDMRKALNILQST-HMASQQITEEAVYLCTGNPLPKDIEQIS 274
EG+ E A+ + NGDMRKA+ LQS + +I+E+ +Y G+ P+ I+Q+
Sbjct: 191 EGIKCEESVYQAIQVVSNGDMRKAITYLQSAFRFFANKISEDVIYNIAGSLPPQLIKQLV 250
Query: 275 YWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIK-MPSDVRVRLMNDLADIEY 333
SF D + + + + +G + ++ ++ +V K + + + + +++
Sbjct: 251 DCCKKNSF-DRLQSMVQSIIAQGYPVSQVISQLFDYVLTTKDLNQSQKSHITMKIGNVDR 309
Query: 334 RLSFGCNDKLQL 345
L G + LQL
Sbjct: 310 NLIDGSEEFLQL 321
>sp|Q8TSX5|RFCS_METAC Replication factor C small subunit OS=Methanosarcina acetivorans
(strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) GN=rfcS
PE=3 SV=1
Length = 338
Score = 227 bits (579), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 120/330 (36%), Positives = 194/330 (58%), Gaps = 14/330 (4%)
Query: 38 IKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARK 97
IK W+EKYRP L VA + ++ + + LPHLL GPPG GKT++ +++AR+
Sbjct: 10 IKEEIWIEKYRPVRLNQVAGQDETIERLKSYVATKNLPHLLFSGPPGVGKTASAVSIARE 69
Query: 98 LYGAQ-YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKD 156
++G + ELNASD+RGID+VR +I++FA T A K++ LDEADA+T D
Sbjct: 70 IFGEDLWRENFTELNASDERGIDIVRNKIKNFAKTAPIG---GAPFKIIFLDEADALTAD 126
Query: 157 AQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAE 216
AQ ALRR +E+++ N RF L CN +KII +QSRC +RF L + ERL+++ +
Sbjct: 127 AQSALRRTMERFSSNCRFILSCNYSSKIIEPIQSRCAVYRFRRLSDEAIKERLEYIAGDQ 186
Query: 217 GLDVTEGGLAALVRLCNGDMRKALNILQSTHM--ASQQITEEAVYLCTGNPLPKDIEQIS 274
GL +TEGG AL+ + GDMRKA+N LQ+ + I+ E +Y T P++I+ +
Sbjct: 187 GLSITEGGYEALIYVAQGDMRKAVNSLQAAAFIDTDKSISRETIYRTTATANPEEIKNLI 246
Query: 275 YWLLNESFADSFKRISEMKMRKGLALVDIVREV--------TMFVFKIKMPSDVRVRLMN 326
L +F + K ++ + +GL+ DIV ++ + V + + V L++
Sbjct: 247 ETALRGNFRIARKELNRLLYEEGLSGEDIVGQIYRVVSEMDNLMVLDLGLTERDIVALVD 306
Query: 327 DLADIEYRLSFGCNDKLQLGSIISTFTQAR 356
+ + ++RL+ G ++K+QL ++++ F +R
Sbjct: 307 VIGETDFRLTEGASEKIQLEALLAHFALSR 336
>sp|Q2FQT9|RFCS_METHJ Replication factor C small subunit OS=Methanospirillum hungatei
(strain JF-1 / DSM 864) GN=rfcS PE=3 SV=1
Length = 323
Score = 227 bits (578), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 116/310 (37%), Positives = 184/310 (59%), Gaps = 3/310 (0%)
Query: 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 102
W+EKYRP+ L D+ ++I++ + ++ +PHLL G GTGKT+ +A+AR+ +G
Sbjct: 8 WIEKYRPRVLEDIIGQQEIIERLRSYVAKREMPHLLFTGNAGTGKTTAAVALAREFFGED 67
Query: 103 YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALR 162
+ ELNASD+RGIDVVR QI+ FA T F ++ K++ LDEADA+T DAQ ALR
Sbjct: 68 WQMNFRELNASDERGIDVVRNQIKQFARTSPFG---GSTFKILFLDEADALTTDAQSALR 124
Query: 163 RVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTE 222
R +E Y + RF L CN KII +QSRC +RF PL V+E +K + + L VTE
Sbjct: 125 RTMETYAQTCRFILSCNYSAKIIDPIQSRCAIYRFRPLGRQAVSEMVKRISADQNLTVTE 184
Query: 223 GGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESF 282
+ A+ + GDMRKA+N LQ + + I+ + ++ T P++I+ + L +F
Sbjct: 185 EVIDAIFYVAQGDMRKAINALQGAAILGRDISPDMIFAITATARPEEIDDLIDLSLAGNF 244
Query: 283 ADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDK 342
+ + + +G+A +++ ++ V K +P V+VRL++ L + ++RLS G
Sbjct: 245 LGAGSSLQALLHDRGIAPQELISQLYRAVVKRDLPEAVKVRLIDSLGETDFRLSEGAGSD 304
Query: 343 LQLGSIISTF 352
+Q+ S+I+ F
Sbjct: 305 IQMQSLIAKF 314
>sp|A3MS28|RFCS_PYRCJ Replication factor C small subunit OS=Pyrobaculum calidifontis
(strain JCM 11548 / VA1) GN=rfcS PE=3 SV=1
Length = 326
Score = 226 bits (576), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 118/304 (38%), Positives = 186/304 (61%), Gaps = 5/304 (1%)
Query: 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 102
W EKYRP+S +V ++ + LPHLL YGPPGTGKT+ L +AR+LYG
Sbjct: 6 WFEKYRPRSFEEVVDLEEVKARLREFVKAGNLPHLLFYGPPGTGKTTMALVLARELYGEY 65
Query: 103 YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALR 162
+ LELNASD+RGI V+R+++++FA T KA KLV+LDEAD MT DAQ ALR
Sbjct: 66 WRENTLELNASDERGIGVIRERVKEFARTAPVG---KAPFKLVILDEADNMTSDAQQALR 122
Query: 163 RVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHV-TERLKHVIEAEGLDVT 221
R++E Y +NTRF L+ N V++II + SRC FRF+P+ P H+ ERL+ + +EG+++
Sbjct: 123 RIMEIYAQNTRFILLANYVSRIIDPIISRCAVFRFSPM-PRHLMAERLREIARSEGVELK 181
Query: 222 EGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNES 281
+ + + + GDMRKA+N+LQ S+ + AV P D+ ++ +
Sbjct: 182 DDAIDLIYEISEGDMRKAINLLQVAAAVSKVVDANAVASAAAAVRPSDVLELFNLAMGGD 241
Query: 282 FADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCND 341
A + ++ E+ KG+A VD++R + ++++ DV+ + L++++YRL+ G ++
Sbjct: 242 LAKARDKLRELMYIKGVAGVDLIRVFQRELIRMQLDDDVKAEVAELLSEVDYRLTQGADE 301
Query: 342 KLQL 345
++QL
Sbjct: 302 EIQL 305
>sp|Q5UP47|RFCS3_MIMIV Putative replication factor C small subunit L499 OS=Acanthamoeba
polyphaga mimivirus GN=MIMI_L499 PE=3 SV=1
Length = 344
Score = 223 bits (569), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 121/313 (38%), Positives = 188/313 (60%), Gaps = 11/313 (3%)
Query: 30 IVSGTPPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTS 89
I S T P K PWVEKYRPQ + + ++RDI+ ++ + LPHLL +GP G+GKTS
Sbjct: 7 IASRTEPK-KQLPWVEKYRPQEIDHIISNRDIILSLKKFIESRTLPHLLFFGPSGSGKTS 65
Query: 90 TILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSF---GVKASVKLVL 146
TI AR++YG + MILELNAS++RGI+ VR +I++F S++S F GV+ KLV+
Sbjct: 66 TIKCCAREIYGKYINYMILELNASNERGIETVRTKIKNFVSSKSSIFLPMGVRDIFKLVI 125
Query: 147 LDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVT 206
LDE D+MT +AQ LR+ IEK + TRF LICN ++KI ALQSRC FRF+PL + +
Sbjct: 126 LDEIDSMTVEAQGMLRQTIEKNSGTTRFCLICNDIDKINIALQSRCASFRFSPLNELDMH 185
Query: 207 ERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMA-SQQITEEAVYLCTGNP 265
RL + EG+ + + +++++ GDMR A+N LQ ++ I E VY +G+
Sbjct: 186 GRLSDICRLEGVKYEKEAINSIIKISKGDMRSAINTLQHVNLVIGGSINTEDVYKISGHC 245
Query: 266 LPKDIEQISYWL--LNESFADSFKR----ISEMKMRKGLALVDIVREVTMFVFKIKMPSD 319
+P+ + + L LN++ S K+ I + + + +++ E+ V + K +
Sbjct: 246 MPEIVTDVFDILFSLNKNKTKSLKKSVNDIITIVTENNITIFNLLEELKNIVMESKFTTS 305
Query: 320 VRVRLMNDLADIE 332
++ L+++ A E
Sbjct: 306 QKIFLIDNFAKTE 318
>sp|Q8PVY4|RFCS_METMA Replication factor C small subunit OS=Methanosarcina mazei (strain
ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM
88) GN=rfcS PE=3 SV=1
Length = 338
Score = 223 bits (569), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 118/330 (35%), Positives = 194/330 (58%), Gaps = 14/330 (4%)
Query: 38 IKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARK 97
IK W+EKYRP L VA + ++ + + LPHLL GPPG GKT++ +++AR+
Sbjct: 10 IKEEIWIEKYRPVRLNQVAGQEETIERLMSYVATKNLPHLLFSGPPGVGKTASAVSIARE 69
Query: 98 LYGAQ-YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKD 156
++G + ELNASD+RGID+VR +I++FA T A K++ LDEADA+T D
Sbjct: 70 IFGEDLWRENFTELNASDERGIDIVRNKIKNFAKTAPMG---GAPFKIIFLDEADALTSD 126
Query: 157 AQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAE 216
AQ ALRR +EK++ N RF L CN +KII +QSRC +RF L + ERL+++ + +
Sbjct: 127 AQSALRRTMEKFSSNCRFILSCNYSSKIIEPIQSRCAVYRFRRLSDKAIRERLEYIAKEQ 186
Query: 217 GLDVTEGGLAALVRLCNGDMRKALNILQSTHM--ASQQITEEAVYLCTGNPLPKDIEQIS 274
L +T+GG AL+ + GDMRKA+N LQ+ + I+ E +Y T P++I+ +
Sbjct: 187 DLSITDGGYEALIYVAQGDMRKAVNSLQAAAFIDVEKPISRETIYRTTATANPEEIKNLI 246
Query: 275 YWLLNESFADSFKRISEMKMRKGLALVDIVREV--------TMFVFKIKMPSDVRVRLMN 326
L +F + K ++ + +GL+ DIV ++ + + + + V L++
Sbjct: 247 ETALRGNFRVARKELNRLLYEEGLSGEDIVGQIYRVVSEMDNLMILDLGLSERDIVGLVD 306
Query: 327 DLADIEYRLSFGCNDKLQLGSIISTFTQAR 356
+ + ++RL+ G ++K+QL ++++ F +R
Sbjct: 307 IIGETDFRLTEGASEKIQLEALLAHFALSR 336
>sp|P53033|RFC2_CHICK Replication factor C subunit 2 OS=Gallus gallus GN=RFC2 PE=2 SV=1
Length = 359
Score = 223 bits (569), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 118/321 (36%), Positives = 187/321 (58%), Gaps = 3/321 (0%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP L +V + D V ++ E +P++++ GPPGTGKT++IL +AR L G
Sbjct: 42 PWVEKYRPLKLCEVVGNEDTVSRLEVFAKEGNVPNIIIAGPPGTGKTTSILCLARALLGP 101
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFAL 161
+ +LELNAS+DRGIDVVR +I+ FA Q + K K+++LDEAD+MT AQ AL
Sbjct: 102 ALKDAVLELNASNDRGIDVVRNKIKMFAQ-QKVTLP-KGRHKIIILDEADSMTDGAQQAL 159
Query: 162 RRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVT 221
RR +E Y+K TRFAL CN +KII +QSRC R+ L + RL ++E E + T
Sbjct: 160 RRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDSQILARLLKIVEKEDVPYT 219
Query: 222 EGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNES 281
+ GL A++ GDMR+ALN LQST+ I E V+ P P ++++ +N +
Sbjct: 220 DDGLEAIIFTAQGDMRQALNNLQSTYSGFGFINSENVFKVCDEPHPLLVKEMIQHCINAN 279
Query: 282 FADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCND 341
+++K ++ + R G + D++ + +MP +++ + ++ +++ G N
Sbjct: 280 IDEAYKILAHL-WRLGYSPEDVIGNIFRVCKTFQMPEYLKLEFIKEIGYTHMKIAEGVNS 338
Query: 342 KLQLGSIISTFTQARSAIVAA 362
LQ+ +++ Q +A A+
Sbjct: 339 LLQMAGLLARLCQKTAAPAAS 359
>sp|A2SQT3|RFCS_METLZ Replication factor C small subunit OS=Methanocorpusculum labreanum
(strain ATCC 43576 / DSM 4855 / Z) GN=rfcS PE=3 SV=1
Length = 321
Score = 223 bits (569), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 113/320 (35%), Positives = 190/320 (59%), Gaps = 4/320 (1%)
Query: 37 DIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVAR 96
D+ W+EKYRP++LA+V +D+V+ + + LPHLL G G GKT+ +A+AR
Sbjct: 2 DVSPEIWIEKYRPKNLAEVVGQQDVVERLRSYVATKALPHLLFTGSAGVGKTTCAVALAR 61
Query: 97 KLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKD 156
+++G ++ ELNASD+RGIDVVR QI+ FA T A+ K++ LDEADA+T+D
Sbjct: 62 EMFGDTWNMNFRELNASDERGIDVVRNQIKQFARTAPLG---DATFKILFLDEADALTQD 118
Query: 157 AQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAE 216
AQ ALRR +E Y + RF L CN +KII +QSRC +RF PL ++E + + + E
Sbjct: 119 AQAALRRTMENYAETCRFILSCNYSSKIIDPIQSRCAIYRFRPLTDEAISEEIARIAKKE 178
Query: 217 GLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYW 276
G+ + EG A+ + GDMRKA+N LQ + S +T E +Y T N P++I +
Sbjct: 179 GITIDEGAYVAITYVSLGDMRKAINALQGAAIVSDHVTAENIYAITSNAKPQEITDLLAR 238
Query: 277 LLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIK-MPSDVRVRLMNDLADIEYRL 335
L F + + + + KG+A +++ ++ + + + + ++V L++ L + ++R+
Sbjct: 239 CLEGDFETAERMLHALMYDKGIAPNELLNQLYREISRSETLDRRLKVDLIDHLGEADFRM 298
Query: 336 SFGCNDKLQLGSIISTFTQA 355
S G + +Q+ ++++ ++
Sbjct: 299 SEGADADIQMDALLARIVRS 318
>sp|Q977Z9|RFCS_THEVO Replication factor C small subunit OS=Thermoplasma volcanium
(strain ATCC 51530 / DSM 4299 / JCM 9571 / NBRC 15438 /
GSS1) GN=rfcS PE=3 SV=2
Length = 318
Score = 220 bits (561), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 112/318 (35%), Positives = 188/318 (59%), Gaps = 6/318 (1%)
Query: 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 102
W EKYRP+SL+++ + + + + LPHLL G GTGKTST +A+A +L+G
Sbjct: 5 WTEKYRPKSLSEIYGEDENIQKLKSFVEKKELPHLLFAGSVGTGKTSTAIALAIELFGES 64
Query: 103 YHNMILELNASDDRGIDVVRQQIQDFASTQ-SFSFGVKASVKLVLLDEADAMTKDAQFAL 161
+ +E+NAS++ GIDV+R +I+D A + S G K ++ LDEAD +T +AQ AL
Sbjct: 65 WKENFIEMNASNENGIDVIRNKIKDIARIRPSNPLGFK----ILFLDEADQLTAEAQAAL 120
Query: 162 RRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVT 221
RR +E Y++ TRF CN +KIIP +QSR RF P++ + ++L + + EG +
Sbjct: 121 RRTMEMYSETTRFVFACNYSSKIIPPIQSRTVVMRFRPVQDEFIKKKLNEIAKNEGFTID 180
Query: 222 EGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNES 281
+ + A+V + GDMRKA+N+LQ+ + S +I+ + +Y G P+ + ++ +N
Sbjct: 181 DESMEAMVEVSGGDMRKAINVLQAVY-TSGEISPKKIYEIIGYASPESVNKLISRAINGL 239
Query: 282 FADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCND 341
F ++ + + +M + GL+ +DIV+ V V +P ++ ++ LAD E+R+ G ND
Sbjct: 240 FDEARQIVDKMMIEDGLSGIDIVKSVHSIVRASVVPPKQKIEIIKALADAEFRIVEGSND 299
Query: 342 KLQLGSIISTFTQARSAI 359
++QL ++I+ S I
Sbjct: 300 RIQLDALIARIADIGSKI 317
>sp|Q46C63|RFCS_METBF Replication factor C small subunit OS=Methanosarcina barkeri
(strain Fusaro / DSM 804) GN=rfcS PE=3 SV=1
Length = 334
Score = 219 bits (558), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 118/326 (36%), Positives = 189/326 (57%), Gaps = 14/326 (4%)
Query: 38 IKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARK 97
IK W+EKYRP L VA + ++ + + LPHLL GPPG GKT++ +++AR+
Sbjct: 6 IKEEIWIEKYRPVRLDQVAGQEETIERLKSYVATKNLPHLLFSGPPGVGKTASAVSIARE 65
Query: 98 LYGAQ-YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKD 156
++G + ELNASD+RGIDVVR +I++FA T A K++ LDEADA+T D
Sbjct: 66 IFGEDLWRENFTELNASDERGIDVVRTKIKNFAKTAPMG---GAEFKIIFLDEADALTSD 122
Query: 157 AQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAE 216
AQ ALRR +E+++ N RF L CN ++II +QSRC FRF L + +RL+++ + +
Sbjct: 123 AQSALRRTMERFSNNCRFILSCNYSSRIIEPIQSRCAVFRFRRLSDEAIRKRLEYIAKDQ 182
Query: 217 GLDVTEGGLAALVRLCNGDMRKALNILQSTHMA--SQQITEEAVYLCTGNPLPKDIEQIS 274
L +TE G ALV + GDMRKA+N LQ+ ++ I+ +Y T P+DI +
Sbjct: 183 VLSITEDGYEALVYVSQGDMRKAVNSLQAAAFVEPNKSISRGTIYRTTATANPEDIRNLI 242
Query: 275 YWLLNESFADSFKRISEMKMRKGLALVDIVREV--------TMFVFKIKMPSDVRVRLMN 326
L +F + K ++ + +GL+ DIV ++ + + + V L++
Sbjct: 243 ETALRGNFRVARKELNRLLYEEGLSGEDIVGQIYRAISEMDNRMILDLGLSEKRIVELVD 302
Query: 327 DLADIEYRLSFGCNDKLQLGSIISTF 352
+ +I++RL+ G +K+QL ++++ F
Sbjct: 303 IIGEIDFRLTEGATEKIQLEALLAHF 328
>sp|A1RV38|RFCS2_PYRIL Replication factor C small subunit 2 OS=Pyrobaculum islandicum
(strain DSM 4184 / JCM 9189) GN=rfcS2 PE=3 SV=1
Length = 320
Score = 219 bits (557), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 114/303 (37%), Positives = 173/303 (57%), Gaps = 3/303 (0%)
Query: 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 102
W EKYRP+S +V ++ + +PHLL YGPPGTGKT+ L +AR+LYG
Sbjct: 6 WFEKYRPRSFDEVVDLEEVKSRLREFVKSGNMPHLLFYGPPGTGKTTMALVLARELYGEY 65
Query: 103 YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALR 162
+ LELNASD+RGI+V+R+++++FA T KA KLV+LDEAD MT DAQ ALR
Sbjct: 66 WRENTLELNASDERGINVIRERVKEFARTAPVG---KAPFKLVILDEADNMTSDAQQALR 122
Query: 163 RVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTE 222
R++E Y +NTRF L+ N ++ II +QSR RF PL V RL+++ E EG+ +++
Sbjct: 123 RIMEIYAQNTRFILLANYISGIIEPIQSRVVMIRFNPLPKEAVISRLRYIAENEGVKISD 182
Query: 223 GGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESF 282
L + GDMRKA+N LQ ++ITE+ V G P+ + + L +F
Sbjct: 183 DALETIYEFTQGDMRKAINALQIAAATEKEITEDVVARALGMVSPRLLRETLQEALKGNF 242
Query: 283 ADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDK 342
+ + +I + G+ ++I+R++ V ++ +P V+ L +A+ Y G
Sbjct: 243 SKAMTQIYGFVVDGGVGELEIIRQIHREVLRLDVPEYVKPELAYIIAEAHYATLRGARGL 302
Query: 343 LQL 345
Q+
Sbjct: 303 TQI 305
>sp|Q8ZWS2|RFCS2_PYRAE Replication factor C small subunit 2 OS=Pyrobaculum aerophilum
(strain ATCC 51768 / IM2 / DSM 7523 / JCM 9630 / NBRC
100827) GN=rfcS2 PE=3 SV=1
Length = 319
Score = 218 bits (556), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 114/303 (37%), Positives = 176/303 (58%), Gaps = 3/303 (0%)
Query: 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 102
W EKYRP+S +V ++ + + +PHLL YGPPGTGKT+ L +AR+LYG
Sbjct: 6 WFEKYRPRSFDEVVDLEEVKARLRQFVKAGNMPHLLFYGPPGTGKTTMALVLARELYGEY 65
Query: 103 YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALR 162
+ LELNASD+RGI+V+R+++++FA T KA KLV+LDEAD MT DAQ ALR
Sbjct: 66 WRENTLELNASDERGINVIRERVKEFARTAPVG---KAPFKLVILDEADNMTSDAQQALR 122
Query: 163 RVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTE 222
R++E Y +NTRF L+ N V+ II +QSR RF+PL V RL+++ E EG+ V++
Sbjct: 123 RIMEIYAQNTRFILLANYVSGIIEPIQSRTVMIRFSPLPKEAVFARLRYIAENEGVKVSD 182
Query: 223 GGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESF 282
L A+ GDMR+A+N LQ S+ +TEE V G P+ + + Y + SF
Sbjct: 183 DALEAIYEFTQGDMRRAINALQIAATVSKAVTEEVVAKALGMVSPRLLRETLYEAVKGSF 242
Query: 283 ADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDK 342
+ +I G+ ++I++++ + ++ + V+ + +A+ Y + G +
Sbjct: 243 GKAATQIYGFVADGGVGELEIIKQIHREMLRLDVQEYVKPEIAYIIAEAHYAILRGAHGL 302
Query: 343 LQL 345
Q+
Sbjct: 303 TQI 305
>sp|P40339|RFC4_YEAST Replication factor C subunit 4 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RFC4 PE=1 SV=1
Length = 323
Score = 218 bits (556), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 121/312 (38%), Positives = 186/312 (59%), Gaps = 10/312 (3%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRPQ L+D+ +++ +D + ++ + +PH+++ G PG GKT+++ +A +L G
Sbjct: 10 PWVEKYRPQVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLGR 69
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFAL 161
Y + +LELNASDDRGIDVVR QI+ FA + K K+V+LDEAD+MT AQ AL
Sbjct: 70 SYADGVLELNASDDRGIDVVRNQIKHFAQKKLHLPPGKH--KIVILDEADSMTAGAQQAL 127
Query: 162 RRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVT 221
RR +E Y+ +TRFA CNQ NKII LQSRC R++ L V +RL +I+ E + T
Sbjct: 128 RRTMELYSNSTRFAFACNQSNKIIEPLQSRCAILRYSKLSDEDVLKRLLQIIKLEDVKYT 187
Query: 222 EGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNES 281
GL A++ GDMR+A+N LQST + + V+ +P P ++++ LL +
Sbjct: 188 NDGLEAIIFTAEGDMRQAINNLQSTVAGHGLVNADNVFKIVDSPHPLIVKKM---LLASN 244
Query: 282 FADSFKRISEMKMRKGLALVDIVR---EVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFG 338
DS + + +KG + +DIV VT + ++K VR+ ++ ++ R+ G
Sbjct: 245 LEDSIQILRTDLWKKGYSSIDIVTTSFRVTKNLAQVK--ESVRLEMIKEIGLTHMRILEG 302
Query: 339 CNDKLQLGSIIS 350
LQL S+++
Sbjct: 303 VGTYLQLASMLA 314
>sp|Q9HI47|RFCS_THEAC Replication factor C small subunit OS=Thermoplasma acidophilum
(strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 /
AMRC-C165) GN=rfcS PE=3 SV=2
Length = 318
Score = 218 bits (555), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 112/316 (35%), Positives = 190/316 (60%), Gaps = 6/316 (1%)
Query: 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 102
W EKYRP+SL+++ + + + + +PHLL G GTGKTST +A+A +L+G
Sbjct: 5 WTEKYRPKSLSEIYGEDENIQKLKSFVEKKEIPHLLFAGSVGTGKTSTAIALAIELFGDS 64
Query: 103 YHNMILELNASDDRGIDVVRQQIQDFASTQ-SFSFGVKASVKLVLLDEADAMTKDAQFAL 161
+ ++E+NAS++ GIDV+R +I+D A + S G K ++ LDEAD +T +AQ AL
Sbjct: 65 WKENMVEMNASNENGIDVIRNKIKDIARIKPSNPLGFK----ILFLDEADQLTAEAQAAL 120
Query: 162 RRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVT 221
RR +E Y++ TRF CN +KIIP +QSR RF P+ +++ +L+ + + EG +
Sbjct: 121 RRTMEIYSETTRFIFSCNYSSKIIPPIQSRTVVMRFRPVPDEYISRKLQEIAKNEGFQID 180
Query: 222 EGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNES 281
E + ALV + GDMRKA+N+LQ+ + S +I+ + +Y G P+ I+++ +N
Sbjct: 181 EESMHALVEVSAGDMRKAINVLQAVY-TSGEISPKKIYEIIGYASPEKIQKMISRAINGL 239
Query: 282 FADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCND 341
F ++ + + M + GL+ +DIVR + +V + ++ ++ LAD E+R+ G ND
Sbjct: 240 FDEAREIVDGMLIYDGLSGIDIVRSLHSYVRSSMISPKQKIEIIKALADAEFRIVEGSND 299
Query: 342 KLQLGSIISTFTQARS 357
++QL ++I+ + S
Sbjct: 300 RIQLDALIAKLAEIGS 315
>sp|Q6L1I0|RFCS_PICTO Replication factor C small subunit OS=Picrophilus torridus (strain
ATCC 700027 / DSM 9790 / JCM 10055 / NBRC 100828)
GN=rfcS PE=3 SV=1
Length = 318
Score = 218 bits (554), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 110/318 (34%), Positives = 187/318 (58%), Gaps = 4/318 (1%)
Query: 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 102
W EKYRP+ L DV + ++T+ LPHL+ GP GTGKTST +A+ +L+G
Sbjct: 5 WTEKYRPKRLDDVIGEDENINTLKSFVKNGDLPHLIFAGPAGTGKTSTAIALTIELFGDD 64
Query: 103 YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALR 162
+ LELNASD+RGID++R I+DFA + + K K++ LDEAD +T +AQ ALR
Sbjct: 65 WKENFLELNASDERGIDIIRNNIKDFAKIRPSN---KLGFKIIFLDEADQLTNEAQAALR 121
Query: 163 RVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTE 222
R +E + TRF CN +KIIP +QSRC RF PL+ + +L+ + + E D+ +
Sbjct: 122 RTMEMFYSTTRFIFSCNYSSKIIPPIQSRCVVLRFRPLDKEAMERKLREIAKNEKFDIDD 181
Query: 223 GGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESF 282
L A+ + +GDMRKA+N++Q+ ++ +I +Y +G + + + LN +F
Sbjct: 182 DSLDAIYEISDGDMRKAINVMQAIQ-STGEIKPSKIYEISGEINKNEYKNLISLSLNGAF 240
Query: 283 ADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDK 342
+D+ + +M + GL+ +DI+R + + ++ + ++ ++ LA+ E+R+S G +D
Sbjct: 241 SDAKSLLDKMLVDYGLSGIDIIRGMHSAIRNERIANRQKLEILIALAEFEFRISQGGSDN 300
Query: 343 LQLGSIISTFTQARSAIV 360
+Q+ ++++ + S I
Sbjct: 301 VQMDALLARISYIGSEIT 318
>sp|P35249|RFC4_HUMAN Replication factor C subunit 4 OS=Homo sapiens GN=RFC4 PE=1 SV=2
Length = 363
Score = 218 bits (554), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 129/333 (38%), Positives = 198/333 (59%), Gaps = 8/333 (2%)
Query: 32 SGTPPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTI 91
SG K PWVEKYRP+ + +VA ++V + + LP+LL YGPPGTGKTSTI
Sbjct: 29 SGENKKAKPVPWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTI 88
Query: 92 LAVARKLYGAQYHNM-ILELNASDDRGIDVVRQQIQDFAS---TQSFSFGVKAS-VKLVL 146
LA AR+L+G + + +LELNASD+RGI VVR+++++FA + S S G K+V+
Sbjct: 89 LAAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPPFKIVI 148
Query: 147 LDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVT 206
LDEAD+MT AQ ALRR +EK +K TRF LICN V++II L SRC++FRF PL
Sbjct: 149 LDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQ 208
Query: 207 ERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTH--MASQQITEEAVYLCTGN 264
+RL + + E + +++ G+A LV++ GD+RKA+ LQS ++ITE+ + G
Sbjct: 209 QRLLDIAKKENVKISDEGIAYLVKVSEGDLRKAITFLQSATRLTGGKEITEKVITDIAGV 268
Query: 265 PLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRL 324
+ I+ + + SF D + + + + +G A +V ++ V + + + +
Sbjct: 269 IPAEKIDGVFAACQSGSF-DKLEAVVKDLIDEGHAATQLVNQLHDVVVENNLSDKQKSII 327
Query: 325 MNDLADIEYRLSFGCNDKLQLGSIISTFTQARS 357
LA+++ L+ G ++ LQL S+ +T Q S
Sbjct: 328 TEKLAEVDKCLADGADEHLQLISLCATVMQQLS 360
>sp|P35250|RFC2_HUMAN Replication factor C subunit 2 OS=Homo sapiens GN=RFC2 PE=1 SV=3
Length = 354
Score = 217 bits (553), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 119/321 (37%), Positives = 185/321 (57%), Gaps = 3/321 (0%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP L ++ + D V ++ E +P++++ GPPGTGKT++IL +AR L G
Sbjct: 37 PWVEKYRPVKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGP 96
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFAL 161
+ +LELNAS+DRGIDVVR +I+ FA Q + K K+++LDEAD+MT AQ AL
Sbjct: 97 ALKDAMLELNASNDRGIDVVRNKIKMFAQ-QKVTLP-KGRHKIIILDEADSMTDGAQQAL 154
Query: 162 RRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVT 221
RR +E Y+K TRFAL CN +KII +QSRC R+ L + RL +VIE E + T
Sbjct: 155 RRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQILTRLMNVIEKERVPYT 214
Query: 222 EGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNES 281
+ GL A++ GDMR+ALN LQST I E V+ P P ++++ +N +
Sbjct: 215 DDGLEAIIFTAQGDMRQALNNLQSTFSGFGFINSENVFKVCDEPHPLLVKEMIQHCVNAN 274
Query: 282 FADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCND 341
+++K ++ + G + DI+ + +M +++ + ++ +++ G N
Sbjct: 275 IDEAYKILAHL-WHLGYSPEDIIGNIFRVCKTFQMAEYLKLEFIKEIGYTHMKIAEGVNS 333
Query: 342 KLQLGSIISTFTQARSAIVAA 362
LQ+ +++ Q A VA+
Sbjct: 334 LLQMAGLLARLCQKTMAPVAS 354
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.134 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 126,494,464
Number of Sequences: 539616
Number of extensions: 5167459
Number of successful extensions: 23805
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 742
Number of HSP's successfully gapped in prelim test: 452
Number of HSP's that attempted gapping in prelim test: 22567
Number of HSP's gapped (non-prelim): 1311
length of query: 364
length of database: 191,569,459
effective HSP length: 119
effective length of query: 245
effective length of database: 127,355,155
effective search space: 31202012975
effective search space used: 31202012975
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)