Query 017884
Match_columns 364
No_of_seqs 289 out of 3100
Neff 9.8
Searched_HMMs 46136
Date Fri Mar 29 04:15:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017884.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017884hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0991 Replication factor C, 100.0 1.7E-52 3.8E-57 342.1 27.6 319 36-357 10-328 (333)
2 PLN03025 replication factor C 100.0 1.5E-50 3.2E-55 368.1 37.3 313 41-356 1-313 (319)
3 KOG0989 Replication factor C, 100.0 4.1E-49 8.9E-54 335.4 29.6 317 39-356 22-345 (346)
4 PRK00440 rfc replication facto 100.0 4.3E-45 9.4E-50 334.3 38.2 314 39-355 3-316 (319)
5 PRK06305 DNA polymerase III su 100.0 3.5E-44 7.6E-49 337.4 35.7 313 39-357 3-351 (451)
6 PRK14956 DNA polymerase III su 100.0 2.8E-44 6E-49 332.4 33.8 311 38-354 3-368 (484)
7 PRK08451 DNA polymerase III su 100.0 7.9E-44 1.7E-48 336.0 35.8 308 41-356 2-336 (535)
8 PRK06645 DNA polymerase III su 100.0 9.9E-44 2.1E-48 335.4 36.4 315 37-357 5-373 (507)
9 PRK14952 DNA polymerase III su 100.0 1E-43 2.2E-48 340.0 36.2 307 42-354 2-362 (584)
10 PRK14971 DNA polymerase III su 100.0 1E-43 2.2E-48 344.4 35.7 313 38-356 2-363 (614)
11 PRK09111 DNA polymerase III su 100.0 1.8E-43 3.8E-48 340.3 36.2 315 35-355 6-374 (598)
12 PRK14958 DNA polymerase III su 100.0 1.4E-43 3.1E-48 336.8 34.5 310 40-355 3-356 (509)
13 PRK14964 DNA polymerase III su 100.0 2.4E-43 5.3E-48 330.0 35.3 305 43-354 3-353 (491)
14 PRK07003 DNA polymerase III su 100.0 3.4E-43 7.4E-48 335.9 35.8 310 40-355 3-358 (830)
15 PRK14965 DNA polymerase III su 100.0 2.2E-43 4.7E-48 341.5 34.7 310 40-355 3-361 (576)
16 PRK14955 DNA polymerase III su 100.0 3.2E-43 6.9E-48 328.1 33.6 310 41-356 4-374 (397)
17 PRK05563 DNA polymerase III su 100.0 7.8E-43 1.7E-47 336.1 36.5 308 41-354 4-359 (559)
18 PRK14961 DNA polymerase III su 100.0 1E-42 2.2E-47 321.3 35.4 310 40-355 3-360 (363)
19 PRK14954 DNA polymerase III su 100.0 7E-43 1.5E-47 336.5 35.5 311 41-357 4-375 (620)
20 PRK14949 DNA polymerase III su 100.0 1E-42 2.2E-47 338.7 35.5 310 40-355 3-357 (944)
21 PRK12402 replication factor C 100.0 3.2E-42 6.9E-47 317.7 36.9 307 41-352 3-336 (337)
22 PRK14960 DNA polymerase III su 100.0 1.9E-42 4.2E-47 327.9 35.0 310 40-355 2-358 (702)
23 PRK14963 DNA polymerase III su 100.0 3.2E-42 7E-47 326.7 36.6 305 43-354 4-340 (504)
24 PRK12323 DNA polymerase III su 100.0 1.3E-42 2.8E-47 328.2 33.5 310 40-355 3-363 (700)
25 PRK07764 DNA polymerase III su 100.0 1.8E-42 4E-47 343.1 36.0 308 41-354 3-364 (824)
26 PRK07133 DNA polymerase III su 100.0 2E-42 4.3E-47 334.1 34.7 316 39-360 4-360 (725)
27 PRK14951 DNA polymerase III su 100.0 3.4E-42 7.4E-47 330.5 35.0 310 40-355 3-364 (618)
28 PRK14953 DNA polymerase III su 100.0 6.6E-42 1.4E-46 323.6 36.0 309 40-355 3-354 (486)
29 TIGR02397 dnaX_nterm DNA polym 100.0 6.5E-42 1.4E-46 317.7 35.2 307 41-353 2-355 (355)
30 PRK06647 DNA polymerase III su 100.0 5E-42 1.1E-46 329.0 34.9 309 41-355 4-358 (563)
31 PRK08691 DNA polymerase III su 100.0 9.2E-42 2E-46 326.2 34.5 310 40-355 3-358 (709)
32 PRK14970 DNA polymerase III su 100.0 2.7E-41 5.9E-46 314.0 36.4 311 38-354 2-348 (367)
33 PRK07994 DNA polymerase III su 100.0 1.4E-41 3E-46 326.9 34.8 311 40-356 3-360 (647)
34 KOG2035 Replication factor C, 100.0 3.1E-41 6.7E-46 282.8 31.1 313 42-358 2-345 (351)
35 PRK14959 DNA polymerase III su 100.0 2.6E-41 5.6E-46 322.1 34.5 310 40-355 3-362 (624)
36 PRK14962 DNA polymerase III su 100.0 7.2E-41 1.6E-45 315.1 35.8 307 42-354 3-332 (472)
37 PRK14957 DNA polymerase III su 100.0 1.2E-40 2.5E-45 316.2 35.8 310 40-355 3-358 (546)
38 PRK14950 DNA polymerase III su 100.0 1E-40 2.2E-45 324.6 36.1 309 41-355 4-361 (585)
39 COG2812 DnaX DNA polymerase II 100.0 1.2E-41 2.7E-46 317.0 28.1 311 40-356 3-361 (515)
40 PRK14948 DNA polymerase III su 100.0 1.5E-40 3.3E-45 322.2 36.2 309 40-354 3-361 (620)
41 PRK05896 DNA polymerase III su 100.0 2.5E-40 5.4E-45 313.8 32.4 269 40-314 3-292 (605)
42 PRK14969 DNA polymerase III su 100.0 4.1E-40 8.9E-45 315.2 34.2 311 40-356 3-359 (527)
43 KOG0990 Replication factor C, 100.0 1.6E-40 3.5E-45 284.4 23.6 333 32-364 20-359 (360)
44 PHA02544 44 clamp loader, smal 100.0 1.1E-35 2.3E-40 271.5 34.8 299 36-354 4-311 (316)
45 PRK04132 replication factor C 100.0 1.5E-35 3.1E-40 291.9 33.4 275 77-354 567-843 (846)
46 COG2256 MGS1 ATPase related to 100.0 6.5E-34 1.4E-38 251.5 29.2 297 41-353 12-335 (436)
47 PRK04195 replication factor C 100.0 1.3E-33 2.9E-38 270.1 30.6 297 41-353 2-311 (482)
48 PRK05564 DNA polymerase III su 100.0 2.7E-31 5.9E-36 241.2 30.3 278 51-353 2-311 (313)
49 PRK13342 recombination factor 100.0 4.4E-31 9.6E-36 248.2 31.0 298 42-354 1-317 (413)
50 PRK13341 recombination factor 100.0 9.6E-31 2.1E-35 257.0 31.8 301 39-353 14-344 (725)
51 PRK07940 DNA polymerase III su 100.0 8.2E-28 1.8E-32 221.8 31.7 294 51-356 3-393 (394)
52 KOG2028 ATPase related to the 100.0 9.5E-29 2.1E-33 215.2 23.6 289 39-339 124-450 (554)
53 PF05496 RuvB_N: Holliday junc 100.0 1.2E-29 2.6E-34 210.9 16.8 198 36-249 7-228 (233)
54 PRK07399 DNA polymerase III su 100.0 7.3E-28 1.6E-32 216.5 29.6 273 51-354 2-312 (314)
55 PRK09112 DNA polymerase III su 100.0 4.9E-27 1.1E-31 213.9 31.9 291 47-356 17-348 (351)
56 PRK07993 DNA polymerase III su 100.0 5.5E-27 1.2E-31 212.4 29.6 285 59-358 8-325 (334)
57 PRK08058 DNA polymerase III su 100.0 2.7E-27 5.9E-32 215.4 26.3 289 51-353 3-327 (329)
58 PRK07471 DNA polymerase III su 100.0 2.4E-26 5.3E-31 210.4 30.3 294 47-355 13-363 (365)
59 PRK05707 DNA polymerase III su 100.0 2.7E-26 5.9E-31 207.3 30.1 281 64-357 11-326 (328)
60 PRK06871 DNA polymerase III su 100.0 5.3E-26 1.1E-30 203.7 28.7 280 59-353 8-320 (325)
61 PRK08769 DNA polymerase III su 99.9 2.7E-25 5.8E-30 199.0 26.6 276 58-358 9-312 (319)
62 COG0470 HolB ATPase involved i 99.9 1.2E-25 2.5E-30 206.4 24.8 290 53-357 1-319 (325)
63 PRK06964 DNA polymerase III su 99.9 5.1E-24 1.1E-28 192.3 31.5 275 60-355 8-340 (342)
64 PRK06090 DNA polymerase III su 99.9 3.7E-24 8.1E-29 191.4 29.2 276 59-352 9-313 (319)
65 PRK05907 hypothetical protein; 99.9 6.9E-24 1.5E-28 189.9 29.6 272 63-354 8-310 (311)
66 PRK00080 ruvB Holliday junctio 99.9 7.1E-25 1.5E-29 200.5 21.6 210 38-263 10-248 (328)
67 PRK05917 DNA polymerase III su 99.9 3.8E-23 8.2E-28 181.2 29.2 258 60-359 4-280 (290)
68 PRK05629 hypothetical protein; 99.9 2.4E-23 5.1E-28 189.6 28.6 271 75-356 7-317 (318)
69 PRK07452 DNA polymerase III su 99.9 3.8E-23 8.3E-28 189.4 28.9 272 75-356 2-325 (326)
70 PRK07914 hypothetical protein; 99.9 8.7E-23 1.9E-27 185.9 30.5 270 75-355 6-316 (320)
71 PRK07132 DNA polymerase III su 99.9 1.8E-22 3.9E-27 179.4 29.4 278 59-356 2-298 (299)
72 COG2255 RuvB Holliday junction 99.9 1.2E-23 2.7E-28 178.2 19.0 204 43-262 16-248 (332)
73 TIGR00678 holB DNA polymerase 99.9 7.5E-24 1.6E-28 178.6 17.5 166 63-239 2-188 (188)
74 KOG1969 DNA replication checkp 99.9 9.2E-23 2E-27 192.1 24.6 208 39-252 257-520 (877)
75 TIGR02902 spore_lonB ATP-depen 99.9 1.5E-23 3.3E-28 201.8 20.0 225 40-265 52-332 (531)
76 PRK06585 holA DNA polymerase I 99.9 1.9E-21 4.2E-26 179.3 31.5 283 65-358 9-340 (343)
77 TIGR00635 ruvB Holliday juncti 99.9 8.2E-23 1.8E-27 185.7 20.6 198 50-263 1-227 (305)
78 PRK08487 DNA polymerase III su 99.9 2.4E-21 5.2E-26 177.0 30.2 279 63-356 4-326 (328)
79 PF13177 DNA_pol3_delta2: DNA 99.9 8.2E-23 1.8E-27 167.0 15.8 140 57-201 1-162 (162)
80 PRK08699 DNA polymerase III su 99.9 7.2E-21 1.6E-25 171.9 29.1 274 60-357 8-322 (325)
81 PRK07276 DNA polymerase III su 99.9 8.3E-21 1.8E-25 167.2 25.8 261 57-349 6-289 (290)
82 PRK05574 holA DNA polymerase I 99.9 4.3E-20 9.3E-25 170.5 31.8 281 64-355 7-339 (340)
83 TIGR01128 holA DNA polymerase 99.9 1.5E-20 3.2E-25 170.7 27.4 253 91-353 4-302 (302)
84 PRK08084 DNA replication initi 99.9 3.1E-21 6.6E-26 167.7 19.4 209 40-263 8-234 (235)
85 PTZ00112 origin recognition co 99.9 8E-20 1.7E-24 177.0 26.3 296 44-347 749-1093(1164)
86 TIGR00602 rad24 checkpoint pro 99.9 6.7E-21 1.5E-25 184.2 17.9 211 38-249 69-330 (637)
87 PRK08727 hypothetical protein; 99.9 5.1E-20 1.1E-24 159.9 21.3 209 40-263 5-229 (233)
88 PRK06893 DNA replication initi 99.9 4E-20 8.7E-25 160.2 19.6 201 48-263 11-228 (229)
89 TIGR02928 orc1/cdc6 family rep 99.8 6.8E-19 1.5E-23 164.1 25.8 287 41-333 6-343 (365)
90 PRK08903 DnaA regulatory inact 99.8 1.3E-19 2.7E-24 157.5 18.8 198 48-264 13-225 (227)
91 PRK05818 DNA polymerase III su 99.8 3.7E-19 8.1E-24 152.7 20.3 160 74-246 6-194 (261)
92 PRK00411 cdc6 cell division co 99.8 2.2E-18 4.8E-23 162.2 27.7 288 42-333 22-351 (394)
93 TIGR02881 spore_V_K stage V sp 99.8 1.4E-19 2.9E-24 160.3 18.1 189 52-248 5-236 (261)
94 TIGR03420 DnaA_homol_Hda DnaA 99.8 1.1E-18 2.4E-23 151.7 19.8 199 49-262 11-225 (226)
95 COG1466 HolA DNA polymerase II 99.8 1.7E-17 3.7E-22 151.8 28.3 280 65-354 6-331 (334)
96 PRK05642 DNA replication initi 99.8 4.8E-18 1E-22 147.5 21.4 210 39-263 4-233 (234)
97 COG1474 CDC6 Cdc6-related prot 99.8 1.6E-17 3.6E-22 152.1 25.2 280 44-333 11-327 (366)
98 COG1223 Predicted ATPase (AAA+ 99.8 9.4E-19 2E-23 146.6 15.2 204 45-263 113-353 (368)
99 TIGR02903 spore_lon_C ATP-depe 99.8 2.8E-18 6.1E-23 167.9 21.0 226 40-266 141-431 (615)
100 PF03215 Rad17: Rad17 cell cyc 99.8 2.9E-18 6.2E-23 163.2 20.0 207 37-248 3-269 (519)
101 PRK14087 dnaA chromosomal repl 99.8 5.4E-18 1.2E-22 160.1 21.1 208 48-264 110-347 (450)
102 CHL00181 cbbX CbbX; Provisiona 99.8 6.2E-18 1.3E-22 150.6 17.9 188 53-248 23-252 (287)
103 COG1222 RPT1 ATP-dependent 26S 99.8 9.6E-18 2.1E-22 147.0 18.3 197 50-261 148-388 (406)
104 PRK14086 dnaA chromosomal repl 99.8 8.8E-17 1.9E-21 153.7 26.2 214 43-263 277-513 (617)
105 COG0593 DnaA ATPase involved i 99.8 2.1E-17 4.6E-22 150.7 19.8 265 51-329 85-376 (408)
106 PRK14088 dnaA chromosomal repl 99.8 8.7E-17 1.9E-21 151.8 24.5 205 51-263 103-330 (440)
107 PRK09087 hypothetical protein; 99.8 1.1E-17 2.4E-22 144.1 16.5 200 38-263 5-220 (226)
108 PRK00149 dnaA chromosomal repl 99.8 1.1E-16 2.3E-21 152.6 25.0 205 51-264 120-348 (450)
109 PRK12422 chromosomal replicati 99.8 1.3E-17 2.9E-22 156.9 18.4 206 47-263 104-341 (445)
110 PRK06620 hypothetical protein; 99.8 2.7E-17 5.9E-22 140.4 18.5 182 51-262 14-213 (214)
111 KOG1970 Checkpoint RAD17-RFC c 99.8 2.8E-17 6.1E-22 151.1 19.7 208 35-247 64-320 (634)
112 TIGR02880 cbbX_cfxQ probable R 99.8 2.4E-17 5.2E-22 147.0 17.7 187 54-248 23-251 (284)
113 PF00308 Bac_DnaA: Bacterial d 99.8 1.1E-17 2.3E-22 143.7 14.4 190 51-249 6-215 (219)
114 TIGR02639 ClpA ATP-dependent C 99.8 4.1E-17 8.9E-22 163.8 20.9 216 40-262 169-426 (731)
115 TIGR00362 DnaA chromosomal rep 99.8 6.4E-17 1.4E-21 152.4 19.8 204 51-263 108-335 (405)
116 PRK06581 DNA polymerase III su 99.7 1.1E-15 2.3E-20 128.3 20.2 178 62-247 2-192 (263)
117 TIGR01241 FtsH_fam ATP-depende 99.7 3.5E-16 7.7E-21 150.8 19.3 206 43-263 45-293 (495)
118 TIGR03345 VI_ClpV1 type VI sec 99.7 2.4E-16 5.3E-21 159.3 18.5 203 40-248 174-408 (852)
119 CHL00195 ycf46 Ycf46; Provisio 99.7 1.7E-15 3.6E-20 143.6 20.7 202 50-265 225-463 (489)
120 PTZ00361 26 proteosome regulat 99.7 7.5E-16 1.6E-20 143.8 17.7 208 40-262 170-421 (438)
121 KOG0730 AAA+-type ATPase [Post 99.7 1.2E-15 2.7E-20 143.4 18.4 185 48-248 429-650 (693)
122 KOG0733 Nuclear AAA ATPase (VC 99.7 1.1E-15 2.4E-20 142.1 17.9 178 51-243 188-403 (802)
123 PRK03992 proteasome-activating 99.7 2.7E-15 5.9E-20 139.9 19.6 171 49-234 127-335 (389)
124 COG1224 TIP49 DNA helicase TIP 99.7 2.3E-15 5E-20 131.8 17.5 119 142-261 292-428 (450)
125 PF06068 TIP49: TIP49 C-termin 99.7 1.1E-15 2.3E-20 136.0 15.3 104 142-246 279-395 (398)
126 CHL00176 ftsH cell division pr 99.7 3.8E-15 8.2E-20 145.5 19.6 199 50-263 180-421 (638)
127 PTZ00454 26S protease regulato 99.7 7.2E-15 1.6E-19 136.4 20.3 200 47-261 139-382 (398)
128 TIGR00763 lon ATP-dependent pr 99.6 3.7E-15 8E-20 150.6 15.0 179 54-244 321-548 (775)
129 TIGR01242 26Sp45 26S proteasom 99.6 1.8E-14 3.8E-19 133.9 17.3 205 46-262 115-360 (364)
130 TIGR03689 pup_AAA proteasome A 99.6 8.5E-15 1.8E-19 138.6 14.4 175 41-221 170-385 (512)
131 TIGR03346 chaperone_ClpB ATP-d 99.6 1.1E-14 2.5E-19 148.3 15.8 203 40-248 160-394 (852)
132 KOG0734 AAA+-type ATPase conta 99.6 3.1E-14 6.8E-19 130.6 15.6 196 49-260 300-536 (752)
133 TIGR01243 CDC48 AAA family ATP 99.6 4.1E-14 8.9E-19 142.7 17.5 173 49-237 449-658 (733)
134 PRK11034 clpA ATP-dependent Cl 99.6 1.2E-13 2.5E-18 137.5 19.9 194 48-248 181-407 (758)
135 KOG0733 Nuclear AAA ATPase (VC 99.6 1.2E-13 2.5E-18 128.9 18.2 181 50-244 508-730 (802)
136 TIGR03015 pepcterm_ATPase puta 99.6 2.5E-13 5.3E-18 121.3 19.7 216 41-263 11-264 (269)
137 TIGR02640 gas_vesic_GvpN gas v 99.6 2.8E-13 6E-18 119.9 19.3 190 59-261 8-253 (262)
138 PRK10865 protein disaggregatio 99.6 3.3E-14 7.1E-19 144.4 14.8 203 40-248 165-399 (857)
139 KOG0738 AAA+-type ATPase [Post 99.6 1E-13 2.2E-18 122.9 15.5 172 50-235 209-416 (491)
140 PRK10787 DNA-binding ATP-depen 99.6 9.3E-14 2E-18 139.2 16.9 206 53-266 322-583 (784)
141 CHL00095 clpC Clp protease ATP 99.6 8.9E-14 1.9E-18 141.4 16.0 198 44-248 170-399 (821)
142 PF05673 DUF815: Protein of un 99.5 5E-13 1.1E-17 113.3 17.8 191 44-247 18-246 (249)
143 PRK13407 bchI magnesium chelat 99.5 3E-13 6.5E-18 122.3 17.3 211 48-262 3-303 (334)
144 KOG1942 DNA helicase, TBP-inte 99.5 1.2E-13 2.7E-18 118.0 13.6 119 142-261 297-434 (456)
145 PLN00020 ribulose bisphosphate 99.5 2E-13 4.4E-18 121.9 15.1 147 77-235 151-331 (413)
146 TIGR03345 VI_ClpV1 type VI sec 99.5 2.2E-13 4.9E-18 138.0 17.4 185 53-247 566-827 (852)
147 PRK11034 clpA ATP-dependent Cl 99.5 4.4E-13 9.5E-18 133.4 17.9 180 53-245 458-710 (758)
148 KOG0731 AAA+-type ATPase conta 99.5 6.9E-13 1.5E-17 128.7 18.6 201 48-262 306-550 (774)
149 KOG0739 AAA+-type ATPase [Post 99.5 1.4E-13 3E-18 118.0 11.8 172 51-235 131-334 (439)
150 TIGR01817 nifA Nif-specific re 99.5 7.1E-13 1.5E-17 129.3 18.0 212 45-259 188-439 (534)
151 PRK10733 hflB ATP-dependent me 99.5 5.6E-13 1.2E-17 131.8 17.0 205 43-262 142-389 (644)
152 KOG1514 Origin recognition com 99.5 6.7E-12 1.4E-16 119.2 22.7 174 76-250 424-628 (767)
153 PF00004 AAA: ATPase family as 99.5 1.5E-13 3.3E-18 108.7 9.9 113 77-198 1-131 (132)
154 PRK08485 DNA polymerase III su 99.5 2.4E-13 5.3E-18 111.2 10.8 125 114-247 35-172 (206)
155 CHL00095 clpC Clp protease ATP 99.5 1E-12 2.2E-17 133.7 17.8 183 53-245 509-776 (821)
156 PRK14700 recombination factor 99.5 4.1E-12 8.8E-17 110.8 19.0 179 172-353 9-212 (300)
157 TIGR02639 ClpA ATP-dependent C 99.5 8.5E-13 1.8E-17 132.8 16.9 181 53-246 454-707 (731)
158 KOG0743 AAA+-type ATPase [Post 99.5 1.2E-12 2.5E-17 119.1 16.0 160 39-214 185-384 (457)
159 COG2204 AtoC Response regulato 99.5 6.3E-12 1.4E-16 116.8 20.9 207 50-259 138-385 (464)
160 KOG2227 Pre-initiation complex 99.5 3.1E-12 6.6E-17 116.3 17.7 195 53-247 150-376 (529)
161 PRK15424 propionate catabolism 99.5 7.5E-12 1.6E-16 120.1 21.0 208 50-258 216-478 (538)
162 TIGR03346 chaperone_ClpB ATP-d 99.5 2.7E-12 5.8E-17 131.1 19.1 185 53-247 565-822 (852)
163 COG0466 Lon ATP-dependent Lon 99.5 1.2E-12 2.6E-17 124.8 15.2 203 56-265 326-584 (782)
164 COG0464 SpoVK ATPases of the A 99.5 2.2E-12 4.7E-17 124.9 17.3 171 50-234 239-445 (494)
165 TIGR02030 BchI-ChlI magnesium 99.5 4E-12 8.6E-17 115.3 17.7 211 52-262 3-306 (337)
166 PRK10865 protein disaggregatio 99.5 4.5E-12 9.8E-17 129.0 20.1 186 51-246 566-824 (857)
167 PRK10820 DNA-binding transcrip 99.5 7.8E-12 1.7E-16 121.0 20.8 208 48-258 199-447 (520)
168 KOG0736 Peroxisome assembly fa 99.5 1.6E-12 3.4E-17 124.4 15.3 174 46-235 665-878 (953)
169 KOG0727 26S proteasome regulat 99.5 4.2E-12 9.1E-17 106.6 15.9 154 51-218 153-344 (408)
170 KOG1968 Replication factor C, 99.5 9.3E-13 2E-17 131.4 14.1 203 40-249 307-538 (871)
171 KOG0728 26S proteasome regulat 99.5 3.2E-12 6.9E-17 107.2 14.8 177 43-234 137-351 (404)
172 TIGR02974 phageshock_pspF psp 99.4 4.8E-12 1E-16 115.3 17.4 200 55-257 1-242 (329)
173 TIGR01243 CDC48 AAA family ATP 99.4 3.3E-12 7.2E-17 129.0 17.7 176 48-239 173-384 (733)
174 KOG0737 AAA+-type ATPase [Post 99.4 8.5E-13 1.8E-17 116.8 11.7 184 50-247 89-307 (386)
175 PRK05342 clpX ATP-dependent pr 99.4 2.1E-12 4.6E-17 120.3 14.9 187 54-246 72-374 (412)
176 CHL00081 chlI Mg-protoporyphyr 99.4 5.3E-12 1.2E-16 114.4 17.1 211 51-262 15-319 (350)
177 KOG0652 26S proteasome regulat 99.4 2.3E-12 5E-17 108.6 13.2 168 51-233 169-374 (424)
178 PRK11388 DNA-binding transcrip 99.4 1.5E-11 3.2E-16 122.7 21.5 208 50-260 322-566 (638)
179 CHL00206 ycf2 Ycf2; Provisiona 99.4 2.9E-12 6.2E-17 133.6 16.5 123 141-263 1732-1875(2281)
180 TIGR02329 propionate_PrpR prop 99.4 1.8E-11 4E-16 117.6 21.0 208 50-260 209-465 (526)
181 cd00009 AAA The AAA+ (ATPases 99.4 2.6E-12 5.7E-17 103.3 12.9 138 56-198 1-150 (151)
182 PRK11608 pspF phage shock prot 99.4 6.8E-12 1.5E-16 114.4 16.9 197 51-250 4-240 (326)
183 COG1221 PspF Transcriptional r 99.4 3.7E-12 7.9E-17 116.3 14.7 199 50-250 75-309 (403)
184 KOG2680 DNA helicase TIP49, TB 99.4 1.2E-11 2.5E-16 106.4 16.6 119 141-260 288-424 (454)
185 KOG0742 AAA+-type ATPase [Post 99.4 2E-12 4.3E-17 115.5 11.9 152 52-216 354-531 (630)
186 KOG0726 26S proteasome regulat 99.4 1.8E-12 3.9E-17 110.9 10.4 200 44-259 176-420 (440)
187 PF01637 Arch_ATPase: Archaeal 99.4 1.1E-12 2.5E-17 114.2 9.3 183 55-240 1-232 (234)
188 PRK05022 anaerobic nitric oxid 99.4 6.6E-11 1.4E-15 114.6 21.9 197 51-250 185-420 (509)
189 KOG0740 AAA+-type ATPase [Post 99.4 2.1E-12 4.6E-17 118.2 10.9 177 45-234 145-354 (428)
190 KOG2004 Mitochondrial ATP-depe 99.4 7.9E-12 1.7E-16 118.8 14.9 184 53-247 411-642 (906)
191 PRK13531 regulatory ATPase Rav 99.4 6.2E-11 1.3E-15 110.7 20.4 201 53-259 20-278 (498)
192 COG3829 RocR Transcriptional r 99.4 1.1E-10 2.4E-15 108.7 21.7 209 47-259 239-491 (560)
193 COG0542 clpA ATP-binding subun 99.4 1E-11 2.2E-16 121.6 14.8 186 53-245 491-749 (786)
194 KOG0735 AAA+-type ATPase [Post 99.4 2.3E-11 5.1E-16 115.5 16.3 180 50-244 664-882 (952)
195 COG0465 HflB ATP-dependent Zn 99.4 1.9E-11 4.2E-16 116.6 15.5 197 50-261 147-386 (596)
196 TIGR00382 clpX endopeptidase C 99.4 2.8E-11 6.1E-16 112.2 15.9 189 53-247 77-381 (413)
197 PF06144 DNA_pol3_delta: DNA p 99.3 8.4E-12 1.8E-16 103.6 11.0 163 77-248 1-172 (172)
198 TIGR01650 PD_CobS cobaltochela 99.3 1.4E-10 3.1E-15 103.5 18.7 176 48-232 40-252 (327)
199 COG2607 Predicted ATPase (AAA+ 99.3 1.1E-10 2.5E-15 97.4 16.4 192 44-248 51-279 (287)
200 TIGR02442 Cob-chelat-sub cobal 99.3 1.1E-10 2.3E-15 115.6 18.8 211 52-262 3-301 (633)
201 KOG0729 26S proteasome regulat 99.3 3.7E-11 8E-16 101.8 12.9 168 51-234 175-381 (435)
202 KOG0730 AAA+-type ATPase [Post 99.3 3.2E-10 7E-15 107.4 19.6 212 48-274 180-425 (693)
203 PRK15429 formate hydrogenlyase 99.3 2.1E-10 4.6E-15 115.2 18.0 198 50-250 373-609 (686)
204 PRK05201 hslU ATP-dependent pr 99.3 1.7E-10 3.8E-15 105.7 15.0 108 141-248 249-404 (443)
205 COG3604 FhlA Transcriptional r 99.3 2.9E-10 6.3E-15 104.6 16.2 203 51-257 221-464 (550)
206 PF05621 TniB: Bacterial TniB 99.3 2.1E-09 4.5E-14 94.4 20.9 204 59-262 43-286 (302)
207 TIGR02915 PEP_resp_reg putativ 99.2 1.4E-09 3E-14 104.2 21.8 205 51-258 137-382 (445)
208 TIGR00390 hslU ATP-dependent p 99.2 1.8E-10 3.8E-15 105.6 13.9 108 141-248 247-402 (441)
209 PRK10923 glnG nitrogen regulat 99.2 2.6E-09 5.6E-14 103.1 21.4 206 51-259 136-382 (469)
210 PRK15115 response regulator Gl 99.2 6.4E-09 1.4E-13 99.6 23.4 204 54-260 135-379 (444)
211 PF01078 Mg_chelatase: Magnesi 99.2 7.2E-11 1.6E-15 98.3 8.2 114 51-168 1-133 (206)
212 KOG0732 AAA+-type ATPase conta 99.2 7.3E-10 1.6E-14 111.0 16.6 186 50-244 262-482 (1080)
213 TIGR00764 lon_rel lon-related 99.2 2E-09 4.4E-14 105.6 18.8 123 141-263 217-389 (608)
214 PRK11331 5-methylcytosine-spec 99.2 8.8E-10 1.9E-14 102.2 15.2 151 52-211 174-370 (459)
215 PRK11361 acetoacetate metaboli 99.1 8.2E-09 1.8E-13 99.3 21.9 205 52-259 142-387 (457)
216 PHA02244 ATPase-like protein 99.1 1E-09 2.2E-14 99.2 14.4 129 64-202 111-263 (383)
217 COG0542 clpA ATP-binding subun 99.1 1.1E-09 2.5E-14 107.4 15.8 193 45-248 162-391 (786)
218 COG3283 TyrR Transcriptional r 99.1 8.7E-09 1.9E-13 91.1 19.6 206 50-258 201-442 (511)
219 PF07728 AAA_5: AAA domain (dy 99.1 5.5E-11 1.2E-15 95.0 5.5 112 76-192 1-139 (139)
220 KOG0744 AAA+-type ATPase [Post 99.1 6.3E-10 1.4E-14 96.9 12.1 157 51-214 140-341 (423)
221 COG0714 MoxR-like ATPases [Gen 99.1 1.4E-09 3.1E-14 99.6 14.7 149 53-211 24-200 (329)
222 KOG0651 26S proteasome regulat 99.1 9E-10 1.9E-14 95.4 11.6 171 50-234 129-339 (388)
223 TIGR01818 ntrC nitrogen regula 99.1 1.4E-08 3E-13 97.9 21.3 204 53-259 134-378 (463)
224 PRK13765 ATP-dependent proteas 99.1 2.3E-09 5E-14 104.9 15.5 122 141-262 226-397 (637)
225 PF00931 NB-ARC: NB-ARC domain 99.1 2.8E-09 6.1E-14 96.0 15.1 184 58-246 1-206 (287)
226 PF07724 AAA_2: AAA domain (Cd 99.1 1.4E-10 3.1E-15 95.3 5.2 104 75-180 4-129 (171)
227 TIGR02031 BchD-ChlD magnesium 99.1 4.1E-09 8.9E-14 103.3 16.2 196 63-262 5-255 (589)
228 smart00350 MCM minichromosome 99.1 3.4E-09 7.3E-14 102.5 15.2 153 54-213 204-400 (509)
229 PF00158 Sigma54_activat: Sigm 99.1 1.7E-09 3.7E-14 88.7 11.2 123 55-180 1-143 (168)
230 PRK12377 putative replication 99.0 1.1E-09 2.4E-14 95.2 9.6 124 47-181 68-206 (248)
231 PF07726 AAA_3: ATPase family 99.0 2.5E-10 5.5E-15 87.1 4.5 111 76-192 1-129 (131)
232 KOG2170 ATPase of the AAA+ sup 99.0 5.7E-09 1.2E-13 90.3 13.0 174 55-232 84-319 (344)
233 TIGR00368 Mg chelatase-related 99.0 1.9E-08 4.1E-13 96.2 16.4 151 50-204 189-395 (499)
234 PF13173 AAA_14: AAA domain 99.0 4.9E-09 1.1E-13 82.4 10.0 119 76-205 4-127 (128)
235 COG1219 ClpX ATP-dependent pro 99.0 1.5E-08 3.3E-13 88.3 13.6 168 75-248 98-365 (408)
236 PRK10365 transcriptional regul 99.0 9.3E-08 2E-12 91.6 20.5 203 55-260 141-384 (441)
237 PF08542 Rep_fac_C: Replicatio 99.0 2.2E-08 4.8E-13 73.2 12.6 87 265-352 3-89 (89)
238 PRK06526 transposase; Provisio 99.0 2.2E-09 4.8E-14 94.0 8.3 121 75-203 99-237 (254)
239 PRK08181 transposase; Validate 99.0 7E-09 1.5E-13 91.4 11.3 106 66-181 100-209 (269)
240 KOG0735 AAA+-type ATPase [Post 99.0 3.6E-08 7.9E-13 94.3 16.5 156 73-235 430-608 (952)
241 PF14532 Sigma54_activ_2: Sigm 98.9 2.2E-09 4.9E-14 85.5 7.2 126 56-200 1-138 (138)
242 PTZ00111 DNA replication licen 98.9 1.6E-08 3.5E-13 101.0 14.4 143 54-202 451-646 (915)
243 PRK08116 hypothetical protein; 98.9 1.2E-08 2.6E-13 90.3 11.7 147 45-202 77-251 (268)
244 smart00763 AAA_PrkA PrkA AAA d 98.9 4.6E-08 1E-12 88.6 15.6 92 140-231 235-348 (361)
245 KOG0741 AAA+-type ATPase [Post 98.9 5.6E-09 1.2E-13 96.6 9.4 171 72-247 251-455 (744)
246 KOG0745 Putative ATP-dependent 98.9 4.2E-08 9E-13 88.9 13.8 170 75-250 227-508 (564)
247 PRK07952 DNA replication prote 98.9 1.5E-08 3.3E-13 87.9 10.8 129 45-181 64-205 (244)
248 COG1239 ChlI Mg-chelatase subu 98.9 7.4E-08 1.6E-12 87.7 15.2 164 51-215 15-234 (423)
249 KOG0482 DNA replication licens 98.8 4.1E-07 8.9E-12 84.0 18.8 266 53-331 342-706 (721)
250 PF05729 NACHT: NACHT domain 98.8 4E-08 8.7E-13 80.6 11.4 138 77-214 3-164 (166)
251 PF01695 IstB_IS21: IstB-like 98.8 5.6E-09 1.2E-13 86.6 6.0 95 74-181 47-150 (178)
252 smart00382 AAA ATPases associa 98.8 9.9E-08 2.2E-12 75.7 12.4 95 75-180 3-125 (148)
253 COG0606 Predicted ATPase with 98.8 5.2E-08 1.1E-12 89.9 10.9 114 50-167 176-309 (490)
254 PRK09183 transposase/IS protei 98.8 2.1E-08 4.5E-13 88.5 7.7 97 75-181 103-206 (259)
255 PRK06835 DNA replication prote 98.8 1.3E-07 2.7E-12 86.0 12.8 137 61-201 168-318 (329)
256 PRK06921 hypothetical protein; 98.8 9.2E-08 2E-12 84.6 11.5 120 74-200 117-254 (266)
257 PRK04841 transcriptional regul 98.8 6.2E-07 1.3E-11 93.7 19.5 185 49-243 10-226 (903)
258 COG3284 AcoR Transcriptional a 98.8 1.7E-07 3.8E-12 89.2 13.8 171 76-250 338-540 (606)
259 COG1220 HslU ATP-dependent pro 98.7 3.6E-07 7.7E-12 80.5 13.4 107 141-247 250-404 (444)
260 PF14516 AAA_35: AAA-like doma 98.7 1E-05 2.2E-10 74.2 23.1 196 55-258 13-253 (331)
261 COG3267 ExeA Type II secretory 98.7 2E-06 4.2E-11 73.3 16.4 182 57-244 35-247 (269)
262 PRK13406 bchD magnesium chelat 98.7 8.8E-07 1.9E-11 86.4 15.8 204 58-262 8-247 (584)
263 PRK04132 replication factor C 98.6 1.7E-08 3.7E-13 101.2 3.9 51 39-89 5-55 (846)
264 PHA00729 NTP-binding motif con 98.6 2.2E-07 4.8E-12 78.9 10.1 121 65-212 8-139 (226)
265 PRK09862 putative ATP-dependen 98.6 1E-07 2.2E-12 90.9 8.8 151 50-204 188-392 (506)
266 PF13401 AAA_22: AAA domain; P 98.6 6.9E-08 1.5E-12 76.1 6.5 104 75-180 5-125 (131)
267 COG1484 DnaC DNA replication p 98.6 1.3E-07 2.8E-12 83.0 8.4 119 59-182 89-210 (254)
268 PF12169 DNA_pol3_gamma3: DNA 98.6 7.3E-07 1.6E-11 71.4 12.0 102 253-355 1-130 (143)
269 PF12774 AAA_6: Hydrolytic ATP 98.6 1.4E-06 3.1E-11 75.1 13.9 136 64-219 24-183 (231)
270 PRK08939 primosomal protein Dn 98.6 1.6E-07 3.5E-12 84.6 8.0 123 48-181 122-261 (306)
271 KOG0478 DNA replication licens 98.6 3.1E-06 6.7E-11 81.0 16.6 142 55-203 431-616 (804)
272 COG1241 MCM2 Predicted ATPase 98.6 5.8E-07 1.3E-11 87.8 12.1 134 54-196 287-464 (682)
273 KOG1051 Chaperone HSP104 and r 98.6 5.7E-07 1.2E-11 90.0 11.6 118 53-181 562-711 (898)
274 KOG0480 DNA replication licens 98.5 1E-06 2.2E-11 83.6 12.3 133 52-193 344-520 (764)
275 PF12775 AAA_7: P-loop contain 98.5 3.4E-07 7.3E-12 81.2 8.7 148 64-215 25-195 (272)
276 PLN03210 Resistant to P. syrin 98.5 4.5E-06 9.8E-11 89.0 18.1 187 50-240 181-393 (1153)
277 PF13191 AAA_16: AAA ATPase do 98.5 2.4E-07 5.2E-12 77.6 6.3 48 54-101 1-51 (185)
278 KOG0477 DNA replication licens 98.5 5.3E-06 1.2E-10 78.6 15.1 228 55-289 451-757 (854)
279 KOG2543 Origin recognition com 98.5 1.8E-05 3.8E-10 71.2 17.3 200 53-258 6-243 (438)
280 COG2909 MalT ATP-dependent tra 98.4 6E-05 1.3E-09 74.5 21.8 180 47-234 13-225 (894)
281 KOG0736 Peroxisome assembly fa 98.4 6.6E-06 1.4E-10 80.0 14.7 167 55-233 403-595 (953)
282 KOG0741 AAA+-type ATPase [Post 98.4 9.4E-06 2E-10 75.7 14.7 152 77-247 541-720 (744)
283 PF10443 RNA12: RNA12 protein; 98.4 4.2E-05 9.2E-10 70.5 19.0 106 142-248 149-284 (431)
284 PF07693 KAP_NTPase: KAP famil 98.4 5.3E-05 1.1E-09 69.5 19.4 75 141-215 172-265 (325)
285 TIGR02688 conserved hypothetic 98.4 7.5E-05 1.6E-09 69.1 19.9 97 67-182 204-314 (449)
286 COG1618 Predicted nucleotide k 98.3 1.4E-05 3.1E-10 63.3 11.2 26 77-102 8-33 (179)
287 PRK10536 hypothetical protein; 98.3 3E-05 6.5E-10 67.2 13.9 120 53-179 55-211 (262)
288 PHA02774 E1; Provisional 98.3 1.4E-05 3.1E-10 76.4 12.5 137 60-218 419-586 (613)
289 PF13604 AAA_30: AAA domain; P 98.3 5E-06 1.1E-10 70.3 8.7 115 60-180 5-130 (196)
290 PF03266 NTPase_1: NTPase; In 98.2 2.3E-06 4.9E-11 70.2 4.5 64 141-207 95-165 (168)
291 PF00910 RNA_helicase: RNA hel 98.2 1E-05 2.2E-10 61.2 7.7 72 77-167 1-79 (107)
292 COG1373 Predicted ATPase (AAA+ 98.1 0.00065 1.4E-08 63.8 20.0 132 62-208 26-162 (398)
293 PF06309 Torsin: Torsin; Inte 98.1 2.4E-05 5.1E-10 59.9 8.2 57 53-109 25-88 (127)
294 KOG2228 Origin recognition com 98.1 3.9E-05 8.4E-10 68.0 10.5 159 55-213 26-219 (408)
295 PF00493 MCM: MCM2/3/5 family 98.1 5.3E-07 1.2E-11 82.5 -1.1 140 43-195 18-201 (331)
296 PRK04296 thymidine kinase; Pro 98.0 4E-05 8.6E-10 64.5 9.7 91 77-178 5-113 (190)
297 KOG0481 DNA replication licens 98.0 0.00049 1.1E-08 64.3 17.2 129 55-194 333-507 (729)
298 PHA02624 large T antigen; Prov 98.0 4.1E-05 9E-10 73.6 10.3 118 61-199 417-561 (647)
299 PF03969 AFG1_ATPase: AFG1-lik 98.0 1.2E-05 2.6E-10 74.1 6.0 118 75-201 63-202 (362)
300 COG5271 MDN1 AAA ATPase contai 98.0 0.00015 3.2E-09 76.2 14.0 154 75-241 889-1071(4600)
301 COG3899 Predicted ATPase [Gene 98.0 0.0017 3.8E-08 66.8 22.0 106 141-247 154-265 (849)
302 PF12780 AAA_8: P-loop contain 97.9 0.0002 4.3E-09 63.3 12.6 150 55-214 10-211 (268)
303 cd01120 RecA-like_NTPases RecA 97.9 0.00015 3.3E-09 58.9 10.3 24 77-100 2-25 (165)
304 COG4650 RtcR Sigma54-dependent 97.8 0.00011 2.4E-09 63.9 8.7 185 76-260 210-438 (531)
305 COG5271 MDN1 AAA ATPase contai 97.8 0.00024 5.2E-09 74.7 12.3 142 75-230 1544-1716(4600)
306 PRK13695 putative NTPase; Prov 97.8 0.00066 1.4E-08 56.2 13.2 70 141-213 96-172 (174)
307 PF02562 PhoH: PhoH-like prote 97.8 6.8E-05 1.5E-09 63.1 7.1 37 141-180 119-155 (205)
308 PF10923 DUF2791: P-loop Domai 97.8 0.003 6.5E-08 59.0 18.3 93 141-233 239-372 (416)
309 PF04665 Pox_A32: Poxvirus A32 97.8 0.0021 4.5E-08 55.6 15.7 131 76-211 15-168 (241)
310 PF09848 DUF2075: Uncharacteri 97.8 3.9E-05 8.5E-10 71.1 5.6 88 77-167 4-117 (352)
311 cd00561 CobA_CobO_BtuR ATP:cor 97.8 0.00016 3.6E-09 58.3 8.3 103 77-181 5-138 (159)
312 TIGR01618 phage_P_loop phage n 97.7 6.9E-05 1.5E-09 63.9 6.3 20 77-96 15-34 (220)
313 PRK15455 PrkA family serine pr 97.7 4.5E-05 9.8E-10 73.1 5.5 52 48-99 71-128 (644)
314 PF10236 DAP3: Mitochondrial r 97.7 0.0021 4.6E-08 58.3 15.9 48 194-241 258-308 (309)
315 PRK12723 flagellar biosynthesi 97.7 0.00054 1.2E-08 63.7 11.9 99 77-179 177-296 (388)
316 KOG0479 DNA replication licens 97.7 0.00018 4E-09 68.1 8.7 141 43-194 295-477 (818)
317 PTZ00202 tuzin; Provisional 97.7 0.0024 5.2E-08 59.5 15.3 51 48-98 257-310 (550)
318 PF00448 SRP54: SRP54-type pro 97.7 0.00037 8.1E-09 58.7 9.5 123 77-203 4-153 (196)
319 TIGR01448 recD_rel helicase, p 97.7 0.00043 9.4E-09 70.0 11.6 114 59-179 326-451 (720)
320 COG4088 Predicted nucleotide k 97.6 0.00018 3.8E-09 59.5 7.0 31 75-105 2-32 (261)
321 TIGR02768 TraA_Ti Ti-type conj 97.6 0.00048 1E-08 69.9 11.6 114 59-179 355-475 (744)
322 TIGR02858 spore_III_AA stage I 97.6 0.00055 1.2E-08 60.6 10.2 35 65-99 102-136 (270)
323 TIGR01447 recD exodeoxyribonuc 97.6 0.00025 5.5E-09 69.6 8.8 102 76-180 162-295 (586)
324 COG4619 ABC-type uncharacteriz 97.6 0.00074 1.6E-08 54.2 9.6 23 76-98 31-53 (223)
325 COG1119 ModF ABC-type molybden 97.6 0.00069 1.5E-08 57.8 10.0 51 141-191 189-243 (257)
326 TIGR02237 recomb_radB DNA repa 97.6 0.00056 1.2E-08 58.4 9.5 35 77-113 15-49 (209)
327 PRK10875 recD exonuclease V su 97.5 0.00031 6.7E-09 69.3 8.5 102 76-180 169-301 (615)
328 PF00519 PPV_E1_C: Papillomavi 97.5 0.00096 2.1E-08 60.8 10.7 115 60-200 247-383 (432)
329 PF05970 PIF1: PIF1-like helic 97.5 0.00054 1.2E-08 63.8 9.5 43 58-100 6-48 (364)
330 cd00046 DEXDc DEAD-like helica 97.5 0.00032 6.9E-09 55.1 6.8 25 76-100 2-26 (144)
331 cd01124 KaiC KaiC is a circadi 97.5 0.00052 1.1E-08 57.4 8.4 26 77-102 2-27 (187)
332 cd03216 ABC_Carb_Monos_I This 97.5 0.00083 1.8E-08 55.0 9.3 98 75-182 27-143 (163)
333 PF13207 AAA_17: AAA domain; P 97.5 0.00012 2.5E-09 56.6 4.1 22 77-98 2-23 (121)
334 PRK14974 cell division protein 97.5 0.001 2.2E-08 60.8 10.5 27 77-103 143-169 (336)
335 KOG4658 Apoptotic ATPase [Sign 97.5 0.0018 4E-08 66.6 13.5 183 56-246 161-365 (889)
336 PRK09361 radB DNA repair and r 97.5 0.0011 2.3E-08 57.4 10.0 47 65-113 12-60 (225)
337 PRK14532 adenylate kinase; Pro 97.5 0.0035 7.5E-08 52.5 12.7 23 76-98 2-24 (188)
338 PRK05703 flhF flagellar biosyn 97.4 0.0017 3.7E-08 61.4 11.9 23 77-99 224-246 (424)
339 PRK13889 conjugal transfer rel 97.4 0.0012 2.7E-08 68.2 11.6 113 59-179 349-469 (988)
340 TIGR03574 selen_PSTK L-seryl-t 97.4 0.00073 1.6E-08 59.5 8.6 25 77-101 2-26 (249)
341 COG1419 FlhF Flagellar GTP-bin 97.4 0.0044 9.4E-08 57.1 13.6 124 77-204 206-352 (407)
342 COG2884 FtsE Predicted ATPase 97.4 0.0025 5.4E-08 52.3 10.7 56 141-196 155-211 (223)
343 PRK06067 flagellar accessory p 97.4 0.0029 6.3E-08 55.1 12.1 35 65-99 14-50 (234)
344 PF13671 AAA_33: AAA domain; P 97.4 0.00034 7.4E-09 55.7 5.7 22 77-98 2-23 (143)
345 PRK08533 flagellar accessory p 97.4 0.0011 2.4E-08 57.4 9.2 26 77-102 27-52 (230)
346 PRK11889 flhF flagellar biosyn 97.4 0.0011 2.3E-08 61.2 9.3 29 77-105 244-272 (436)
347 cd03222 ABC_RNaseL_inhibitor T 97.4 0.0018 4E-08 53.6 10.0 97 76-181 27-132 (177)
348 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.4 0.0016 3.4E-08 52.1 9.3 94 75-182 27-128 (144)
349 PF05272 VirE: Virulence-assoc 97.4 0.0019 4.1E-08 54.5 10.1 99 77-199 55-169 (198)
350 smart00487 DEXDc DEAD-like hel 97.4 0.0012 2.6E-08 55.2 9.1 40 142-181 130-170 (201)
351 TIGR01359 UMP_CMP_kin_fam UMP- 97.4 0.0039 8.5E-08 51.9 12.1 22 77-98 2-23 (183)
352 TIGR01613 primase_Cterm phage/ 97.3 0.0055 1.2E-07 55.6 13.5 133 52-199 47-203 (304)
353 cd03228 ABCC_MRP_Like The MRP 97.3 0.0014 3.1E-08 54.0 8.9 43 141-183 114-157 (171)
354 PF05707 Zot: Zonular occluden 97.3 0.00017 3.7E-09 60.8 3.4 58 141-198 79-144 (193)
355 PF08433 KTI12: Chromatin asso 97.3 0.0029 6.3E-08 56.1 11.3 97 75-178 2-106 (270)
356 cd00267 ABC_ATPase ABC (ATP-bi 97.3 0.0018 3.8E-08 52.6 9.3 96 75-182 26-141 (157)
357 cd03281 ABC_MSH5_euk MutS5 hom 97.3 0.0016 3.5E-08 55.8 9.2 21 76-96 31-51 (213)
358 TIGR02782 TrbB_P P-type conjug 97.3 0.0019 4E-08 58.3 10.0 49 49-99 105-157 (299)
359 cd01128 rho_factor Transcripti 97.3 0.00069 1.5E-08 59.3 6.8 27 75-101 17-43 (249)
360 COG1485 Predicted ATPase [Gene 97.3 0.0036 7.8E-08 56.3 11.2 115 77-200 68-204 (367)
361 PRK00771 signal recognition pa 97.3 0.0034 7.4E-08 59.4 11.7 33 77-109 98-130 (437)
362 COG1125 OpuBA ABC-type proline 97.3 0.00099 2.1E-08 57.1 7.2 22 77-98 30-51 (309)
363 PRK06762 hypothetical protein; 97.3 0.0068 1.5E-07 49.6 12.2 22 77-98 5-26 (166)
364 cd03246 ABCC_Protease_Secretio 97.3 0.0027 5.8E-08 52.5 9.8 42 141-182 114-157 (173)
365 PRK14528 adenylate kinase; Pro 97.3 0.0077 1.7E-07 50.4 12.6 24 75-98 2-25 (186)
366 PRK13826 Dtr system oriT relax 97.3 0.0023 4.9E-08 66.8 11.1 99 76-179 399-504 (1102)
367 cd01121 Sms Sms (bacterial rad 97.3 0.0026 5.5E-08 59.1 10.4 48 64-113 70-119 (372)
368 cd03214 ABC_Iron-Siderophores_ 97.3 0.0012 2.6E-08 55.0 7.6 105 75-182 26-159 (180)
369 TIGR03877 thermo_KaiC_1 KaiC d 97.3 0.0023 5E-08 55.8 9.6 58 64-125 9-68 (237)
370 COG0529 CysC Adenylylsulfate k 97.2 0.0014 3E-08 53.0 7.4 34 76-109 25-58 (197)
371 cd03247 ABCC_cytochrome_bd The 97.2 0.003 6.5E-08 52.5 9.9 43 141-183 116-159 (178)
372 PRK08118 topology modulation p 97.2 0.00072 1.6E-08 55.5 6.0 27 75-101 2-28 (167)
373 COG1126 GlnQ ABC-type polar am 97.2 0.0028 6.1E-08 53.1 9.2 40 141-180 154-195 (240)
374 PRK07261 topology modulation p 97.2 0.0016 3.4E-08 53.8 7.8 22 77-98 3-24 (171)
375 TIGR03878 thermo_KaiC_2 KaiC d 97.2 0.003 6.5E-08 55.9 9.9 31 77-107 39-69 (259)
376 PRK12724 flagellar biosynthesi 97.2 0.0031 6.8E-08 58.8 10.2 124 77-204 226-373 (432)
377 cd01394 radB RadB. The archaea 97.2 0.0049 1.1E-07 53.0 11.0 48 64-113 7-56 (218)
378 PF13479 AAA_24: AAA domain 97.2 0.00095 2.1E-08 57.2 6.4 18 77-94 6-23 (213)
379 COG2842 Uncharacterized ATPase 97.2 0.0057 1.2E-07 53.8 11.0 178 51-248 70-277 (297)
380 KOG1051 Chaperone HSP104 and r 97.2 0.0042 9.1E-08 63.0 11.4 172 52-229 185-383 (898)
381 PF00437 T2SE: Type II/IV secr 97.2 0.00086 1.9E-08 59.8 6.1 52 50-101 101-154 (270)
382 cd01131 PilT Pilus retraction 97.2 0.0042 9E-08 52.6 10.0 25 76-100 3-27 (198)
383 PF13245 AAA_19: Part of AAA d 97.2 0.00081 1.7E-08 47.2 4.7 25 75-99 11-35 (76)
384 TIGR00708 cobA cob(I)alamin ad 97.2 0.0018 3.9E-08 52.9 7.3 101 76-181 7-140 (173)
385 PRK05800 cobU adenosylcobinami 97.2 0.0033 7.1E-08 51.7 9.0 23 76-98 3-25 (170)
386 PRK14722 flhF flagellar biosyn 97.1 0.0039 8.4E-08 57.6 10.3 22 77-98 140-161 (374)
387 PRK11823 DNA repair protein Ra 97.1 0.0035 7.7E-08 59.8 10.5 48 64-113 68-117 (446)
388 COG2804 PulE Type II secretory 97.1 0.0031 6.6E-08 59.6 9.7 116 49-183 234-363 (500)
389 COG1124 DppF ABC-type dipeptid 97.1 0.0017 3.7E-08 55.4 7.3 42 141-182 159-203 (252)
390 COG4178 ABC-type uncharacteriz 97.1 0.0032 6.8E-08 61.2 10.0 41 141-181 533-574 (604)
391 TIGR02012 tigrfam_recA protein 97.1 0.0071 1.5E-07 54.8 11.7 38 64-101 42-82 (321)
392 COG3854 SpoIIIAA ncharacterize 97.1 0.0095 2.1E-07 50.5 11.4 35 65-99 128-162 (308)
393 PRK05986 cob(I)alamin adenolsy 97.1 0.0023 5E-08 53.1 7.8 102 75-181 23-158 (191)
394 PRK04328 hypothetical protein; 97.1 0.0034 7.4E-08 55.2 9.4 37 65-101 12-50 (249)
395 PF01443 Viral_helicase1: Vira 97.1 0.00087 1.9E-08 58.3 5.5 21 77-97 1-21 (234)
396 PRK12727 flagellar biosynthesi 97.1 0.011 2.4E-07 56.7 13.1 25 76-100 352-376 (559)
397 PRK13894 conjugal transfer ATP 97.1 0.0036 7.9E-08 56.9 9.4 48 49-98 121-172 (319)
398 KOG3928 Mitochondrial ribosome 97.1 0.045 9.7E-07 50.4 16.1 101 142-242 316-456 (461)
399 KOG3347 Predicted nucleotide k 97.1 0.00057 1.2E-08 53.5 3.6 25 74-98 7-31 (176)
400 cd00464 SK Shikimate kinase (S 97.1 0.0037 8E-08 50.4 8.6 22 77-98 2-23 (154)
401 PRK14737 gmk guanylate kinase; 97.1 0.0029 6.3E-08 52.9 8.0 22 77-98 7-28 (186)
402 cd00983 recA RecA is a bacter 97.1 0.007 1.5E-07 54.9 11.0 38 64-101 42-82 (325)
403 PF01745 IPT: Isopentenyl tran 97.0 0.011 2.4E-07 49.6 11.0 143 77-232 4-160 (233)
404 PRK09376 rho transcription ter 97.0 0.0015 3.2E-08 60.2 6.5 29 75-103 170-198 (416)
405 PRK09354 recA recombinase A; P 97.0 0.0091 2E-07 54.6 11.4 38 64-101 47-87 (349)
406 cd01428 ADK Adenylate kinase ( 97.0 0.0056 1.2E-07 51.5 9.6 22 77-98 2-23 (194)
407 cd03238 ABC_UvrA The excision 97.0 0.0072 1.6E-07 50.0 9.9 41 142-182 108-150 (176)
408 PRK06696 uridine kinase; Valid 97.0 0.0013 2.9E-08 56.8 5.7 43 59-101 4-49 (223)
409 cd03213 ABCG_EPDR ABCG transpo 97.0 0.0051 1.1E-07 51.9 9.1 42 141-182 129-172 (194)
410 COG1136 SalX ABC-type antimicr 97.0 0.0055 1.2E-07 52.3 9.1 41 141-181 160-203 (226)
411 cd02019 NK Nucleoside/nucleoti 97.0 0.0013 2.8E-08 45.2 4.4 22 77-98 2-23 (69)
412 TIGR00767 rho transcription te 97.0 0.0026 5.6E-08 58.9 7.5 27 75-101 169-195 (415)
413 COG1066 Sms Predicted ATP-depe 97.0 0.0099 2.1E-07 54.6 11.0 50 62-114 79-130 (456)
414 cd03223 ABCD_peroxisomal_ALDP 97.0 0.012 2.7E-07 48.2 10.8 104 76-182 29-149 (166)
415 COG2274 SunT ABC-type bacterio 97.0 0.0036 7.8E-08 62.9 8.9 42 141-182 627-669 (709)
416 cd02027 APSK Adenosine 5'-phos 97.0 0.0042 9.1E-08 50.0 7.8 25 77-101 2-26 (149)
417 cd02020 CMPK Cytidine monophos 96.9 0.034 7.3E-07 44.2 13.1 22 77-98 2-23 (147)
418 cd03115 SRP The signal recogni 96.9 0.0048 1E-07 50.9 8.3 27 77-103 3-29 (173)
419 PRK00131 aroK shikimate kinase 96.9 0.0011 2.4E-08 54.6 4.5 24 75-98 5-28 (175)
420 KOG2383 Predicted ATPase [Gene 96.9 0.0018 4E-08 58.9 6.0 95 77-178 117-230 (467)
421 PF13238 AAA_18: AAA domain; P 96.9 0.00072 1.6E-08 52.6 3.1 22 77-98 1-22 (129)
422 TIGR01420 pilT_fam pilus retra 96.9 0.016 3.4E-07 53.6 12.4 26 75-100 123-148 (343)
423 TIGR02868 CydC thiol reductant 96.9 0.0073 1.6E-07 59.3 10.8 40 141-180 488-528 (529)
424 COG3910 Predicted ATPase [Gene 96.9 0.017 3.7E-07 47.4 10.8 49 49-98 13-61 (233)
425 PF13086 AAA_11: AAA domain; P 96.9 0.0011 2.4E-08 57.4 4.4 37 60-98 5-41 (236)
426 PRK12608 transcription termina 96.9 0.0027 5.8E-08 58.3 7.0 33 72-104 131-163 (380)
427 PRK10416 signal recognition pa 96.9 0.0057 1.2E-07 55.6 9.1 27 77-103 117-143 (318)
428 PRK00091 miaA tRNA delta(2)-is 96.9 0.013 2.8E-07 52.9 11.2 24 76-99 6-29 (307)
429 PRK14527 adenylate kinase; Pro 96.9 0.0092 2E-07 50.1 9.7 24 76-99 8-31 (191)
430 COG1117 PstB ABC-type phosphat 96.9 0.0033 7E-08 52.6 6.6 42 141-182 167-209 (253)
431 cd02021 GntK Gluconate kinase 96.9 0.002 4.3E-08 51.8 5.3 22 77-98 2-23 (150)
432 cd00544 CobU Adenosylcobinamid 96.9 0.017 3.8E-07 47.4 10.8 21 77-97 2-22 (169)
433 CHL00195 ycf46 Ycf46; Provisio 96.9 0.033 7.1E-07 53.7 14.3 117 142-259 82-202 (489)
434 PRK02496 adk adenylate kinase; 96.9 0.019 4.1E-07 47.9 11.4 24 76-99 3-26 (184)
435 PRK00279 adk adenylate kinase; 96.9 0.011 2.4E-07 50.7 10.1 23 77-99 3-25 (215)
436 cd01878 HflX HflX subfamily. 96.9 0.097 2.1E-06 44.3 15.9 24 74-97 41-64 (204)
437 PF14840 DNA_pol3_delt_C: Proc 96.8 0.016 3.5E-07 44.9 9.9 82 271-353 2-119 (125)
438 PRK06547 hypothetical protein; 96.8 0.0023 5E-08 52.7 5.5 31 69-99 10-40 (172)
439 PRK05973 replicative DNA helic 96.8 0.01 2.2E-07 51.4 9.7 26 77-102 67-92 (237)
440 TIGR03881 KaiC_arch_4 KaiC dom 96.8 0.012 2.7E-07 50.9 10.4 46 65-112 9-56 (229)
441 TIGR02525 plasmid_TraJ plasmid 96.8 0.02 4.2E-07 53.2 12.1 25 76-100 151-175 (372)
442 PRK13947 shikimate kinase; Pro 96.8 0.0015 3.2E-08 53.9 4.4 24 75-98 2-25 (171)
443 PRK03839 putative kinase; Prov 96.8 0.0013 2.8E-08 54.7 4.0 22 77-98 3-24 (180)
444 PRK13833 conjugal transfer pro 96.8 0.0038 8.3E-08 56.6 7.3 57 41-99 107-169 (323)
445 COG2874 FlaH Predicted ATPases 96.8 0.022 4.8E-07 47.7 10.9 110 77-191 31-177 (235)
446 TIGR02788 VirB11 P-type DNA tr 96.8 0.013 2.8E-07 53.2 10.6 25 75-99 145-169 (308)
447 TIGR02655 circ_KaiC circadian 96.8 0.011 2.3E-07 57.3 10.7 40 63-102 250-291 (484)
448 TIGR00416 sms DNA repair prote 96.8 0.014 3E-07 55.9 11.1 49 63-113 81-131 (454)
449 cd01393 recA_like RecA is a b 96.8 0.02 4.3E-07 49.5 11.4 58 65-122 8-71 (226)
450 cd03229 ABC_Class3 This class 96.8 0.0071 1.5E-07 50.2 8.2 42 141-182 118-162 (178)
451 cd01123 Rad51_DMC1_radA Rad51_ 96.8 0.013 2.8E-07 51.0 10.2 59 65-123 8-72 (235)
452 cd04124 RabL2 RabL2 subfamily. 96.8 0.016 3.5E-07 47.0 10.2 22 77-98 3-24 (161)
453 COG1100 GTPase SAR1 and relate 96.8 0.022 4.7E-07 48.8 11.5 99 77-183 8-123 (219)
454 PF08298 AAA_PrkA: PrkA AAA do 96.8 0.0023 4.9E-08 58.0 5.3 49 51-99 58-113 (358)
455 PF01583 APS_kinase: Adenylyls 96.8 0.0028 6.1E-08 51.0 5.3 33 77-109 5-37 (156)
456 cd03283 ABC_MutS-like MutS-lik 96.8 0.013 2.9E-07 49.5 9.7 23 76-98 27-49 (199)
457 cd01129 PulE-GspE PulE/GspE Th 96.8 0.0028 6E-08 56.2 5.8 50 50-100 57-106 (264)
458 cd04106 Rab23_lke Rab23-like s 96.8 0.048 1E-06 44.0 12.8 21 77-97 3-23 (162)
459 PHA02530 pseT polynucleotide k 96.8 0.006 1.3E-07 55.2 8.1 22 77-98 5-26 (300)
460 PRK13808 adenylate kinase; Pro 96.8 0.022 4.7E-07 51.8 11.5 23 76-98 2-24 (333)
461 PRK11174 cysteine/glutathione 96.7 0.0098 2.1E-07 59.3 10.2 41 141-181 503-544 (588)
462 PRK11176 lipid transporter ATP 96.7 0.012 2.6E-07 58.6 10.8 41 141-181 498-539 (582)
463 TIGR00174 miaA tRNA isopenteny 96.7 0.017 3.7E-07 51.5 10.5 23 77-99 2-24 (287)
464 TIGR03880 KaiC_arch_3 KaiC dom 96.7 0.0087 1.9E-07 51.7 8.5 36 65-100 5-42 (224)
465 cd01125 repA Hexameric Replica 96.7 0.025 5.5E-07 49.3 11.5 50 77-128 4-63 (239)
466 PRK13539 cytochrome c biogenes 96.7 0.014 3.1E-07 49.7 9.7 56 141-201 145-202 (207)
467 PRK07667 uridine kinase; Provi 96.7 0.0039 8.5E-08 52.5 6.1 34 77-110 20-53 (193)
468 PF00406 ADK: Adenylate kinase 96.7 0.015 3.2E-07 46.8 9.2 20 79-98 1-20 (151)
469 PRK12726 flagellar biosynthesi 96.7 0.0083 1.8E-07 55.2 8.3 27 77-103 209-235 (407)
470 PRK00625 shikimate kinase; Pro 96.7 0.0021 4.6E-08 53.0 4.1 23 76-98 2-24 (173)
471 PRK13709 conjugal transfer nic 96.7 0.02 4.3E-07 62.8 12.4 117 59-180 970-1099(1747)
472 cd03227 ABC_Class2 ABC-type Cl 96.7 0.024 5.1E-07 46.3 10.3 102 76-182 23-142 (162)
473 PF06745 KaiC: KaiC; InterPro 96.7 0.0029 6.3E-08 54.7 5.2 34 65-98 8-43 (226)
474 TIGR03499 FlhF flagellar biosy 96.7 0.0043 9.3E-08 55.6 6.3 24 77-100 197-220 (282)
475 TIGR00150 HI0065_YjeE ATPase, 96.6 0.0041 8.9E-08 48.6 5.3 23 77-99 25-47 (133)
476 PLN02674 adenylate kinase 96.6 0.046 1E-06 47.6 12.3 24 75-98 32-55 (244)
477 cd03232 ABC_PDR_domain2 The pl 96.6 0.01 2.2E-07 49.9 8.1 42 141-182 126-169 (192)
478 PRK09270 nucleoside triphospha 96.6 0.0059 1.3E-07 52.9 6.8 44 60-103 18-62 (229)
479 cd03230 ABC_DR_subfamily_A Thi 96.6 0.018 4E-07 47.5 9.4 42 141-182 113-156 (173)
480 PF08303 tRNA_lig_kinase: tRNA 96.6 0.049 1.1E-06 43.8 11.2 77 80-170 5-82 (168)
481 PRK10867 signal recognition pa 96.6 0.05 1.1E-06 51.5 13.2 25 77-101 103-127 (433)
482 PRK14530 adenylate kinase; Pro 96.6 0.0026 5.7E-08 54.6 4.3 24 75-98 4-27 (215)
483 TIGR02760 TraI_TIGR conjugativ 96.6 0.011 2.4E-07 66.2 10.0 118 56-179 429-565 (1960)
484 TIGR01663 PNK-3'Pase polynucle 96.6 0.0066 1.4E-07 58.7 7.4 83 77-177 372-454 (526)
485 PF13337 Lon_2: Putative ATP-d 96.6 0.07 1.5E-06 50.1 13.7 92 76-183 210-313 (457)
486 TIGR01425 SRP54_euk signal rec 96.6 0.013 2.8E-07 55.1 9.1 27 77-103 103-129 (429)
487 smart00534 MUTSac ATPase domai 96.6 0.018 4E-07 48.0 9.2 20 77-96 2-21 (185)
488 cd03264 ABC_drug_resistance_li 96.6 0.0052 1.1E-07 52.6 6.0 42 141-182 148-190 (211)
489 cd03215 ABC_Carb_Monos_II This 96.6 0.013 2.9E-07 48.7 8.3 41 141-181 122-164 (182)
490 TIGR00064 ftsY signal recognit 96.6 0.02 4.3E-07 50.9 9.8 33 77-109 75-107 (272)
491 cd04119 RJL RJL (RabJ-Like) su 96.6 0.074 1.6E-06 43.0 12.6 22 77-98 3-24 (168)
492 COG1855 ATPase (PilT family) [ 96.6 0.0029 6.4E-08 58.5 4.5 55 44-103 235-292 (604)
493 PRK10463 hydrogenase nickel in 96.5 0.025 5.4E-07 50.3 10.2 41 60-100 90-130 (290)
494 PRK05541 adenylylsulfate kinas 96.5 0.0031 6.7E-08 52.2 4.3 26 76-101 9-34 (176)
495 TIGR01360 aden_kin_iso1 adenyl 96.5 0.0024 5.3E-08 53.4 3.8 25 74-98 3-27 (188)
496 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 96.5 0.079 1.7E-06 43.1 12.7 22 76-97 4-25 (166)
497 COG0467 RAD55 RecA-superfamily 96.5 0.0062 1.4E-07 53.9 6.5 33 77-109 26-58 (260)
498 cd03243 ABC_MutS_homologs The 96.5 0.012 2.6E-07 49.9 8.0 22 76-97 31-52 (202)
499 TIGR01313 therm_gnt_kin carboh 96.5 0.0017 3.7E-08 53.0 2.7 22 77-98 1-22 (163)
500 PHA00350 putative assembly pro 96.5 0.0093 2E-07 55.5 7.7 52 141-192 81-156 (399)
No 1
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=100.00 E-value=1.7e-52 Score=342.06 Aligned_cols=319 Identities=37% Similarity=0.627 Sum_probs=302.2
Q ss_pred CCCCCCChhhccCCCCCcchhccHHHHHHHHHHHhcCCCCcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCC
Q 017884 36 PDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDD 115 (364)
Q Consensus 36 ~~~~~~~~~~~~~p~~~~~~vg~~~~~~~l~~~~~~~~~~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~ 115 (364)
....+.||++||||..+.|+||+++.+..|.-..+.|..||++|.||||+||||.+.++|+++.+..+.-.++++|+++.
T Consensus 10 ~~~~~l~wVeKYrP~~l~dIVGNe~tv~rl~via~~gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASde 89 (333)
T KOG0991|consen 10 SDKYQLPWVEKYRPSVLQDIVGNEDTVERLSVIAKEGNMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDE 89 (333)
T ss_pred cccccchHHHhhCchHHHHhhCCHHHHHHHHHHHHcCCCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCccc
Confidence 34457889999999999999999999999999999999999999999999999999999999998888888999999999
Q ss_pred CChHHHHHHHHHHHhcCccccCCccceEEEEEeCCCCCCHHHHHHHHHHHHHhccCccEEEEeeccccCchhhhccceEE
Q 017884 116 RGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRF 195 (364)
Q Consensus 116 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~l~~~l~sr~~~i 195 (364)
+|++.++..|+.|++.... . +.+..++||+||+|.|+..+|.+|+++||-++..++|.++||...++.+++.|||-++
T Consensus 90 RGIDvVRn~IK~FAQ~kv~-l-p~grhKIiILDEADSMT~gAQQAlRRtMEiyS~ttRFalaCN~s~KIiEPIQSRCAiL 167 (333)
T KOG0991|consen 90 RGIDVVRNKIKMFAQKKVT-L-PPGRHKIIILDEADSMTAGAQQALRRTMEIYSNTTRFALACNQSEKIIEPIQSRCAIL 167 (333)
T ss_pred cccHHHHHHHHHHHHhhcc-C-CCCceeEEEeeccchhhhHHHHHHHHHHHHHcccchhhhhhcchhhhhhhHHhhhHhh
Confidence 9999999999999876543 2 2236899999999999999999999999999999999999999999999999999999
Q ss_pred EecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCchHHHHHhcCCCChHHHHHHHH
Q 017884 196 RFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISY 275 (364)
Q Consensus 196 ~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~a~~~l~~~~~~~~~i~~~~v~~~~~~~~~~~~~~l~~ 275 (364)
+|..+++.++...+..+++.+++.++++.++.++.-+.||+|+++|.||......+.++.+.|.+++..+.+..+.+++.
T Consensus 168 Rysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaiifta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~ 247 (333)
T KOG0991|consen 168 RYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAIIFTAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQ 247 (333)
T ss_pred hhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhhhhccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998889999999999999999999999999
Q ss_pred HHHhccHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHH
Q 017884 276 WLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDKLQLGSIISTFTQA 355 (364)
Q Consensus 276 ~l~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~i~~~l~~~~~~l~~~~~~~~~l~~l~~~l~~~ 355 (364)
++...++.++++.+..++ +.|++|.+|+..+|+...++.+++....+++..++-+-+++..|.+..++|..++++||..
T Consensus 248 ~~~~~~~~~A~~il~~lw-~lgysp~Dii~~~FRv~K~~~~~E~~rlE~ikeig~thmrI~eGv~s~LQl~glla~l~~~ 326 (333)
T KOG0991|consen 248 ACLKRNIDEALKILAELW-KLGYSPEDIITTLFRVVKNMDVAESLRLEFIKEIGLTHMRILEGVNSLLQLSGLLAKLCKV 326 (333)
T ss_pred HHHhccHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhHHhHHHhhHhHHHHHHHHHHHHHHh
Confidence 999999999999999999 9999999999999999999888888888999999999999999999999999999999976
Q ss_pred HH
Q 017884 356 RS 357 (364)
Q Consensus 356 ~~ 357 (364)
-.
T Consensus 327 ~~ 328 (333)
T KOG0991|consen 327 GE 328 (333)
T ss_pred cc
Confidence 43
No 2
>PLN03025 replication factor C subunit; Provisional
Probab=100.00 E-value=1.5e-50 Score=368.13 Aligned_cols=313 Identities=39% Similarity=0.642 Sum_probs=289.5
Q ss_pred CChhhccCCCCCcchhccHHHHHHHHHHHhcCCCCcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCCCChHH
Q 017884 41 SPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDV 120 (364)
Q Consensus 41 ~~~~~~~~p~~~~~~vg~~~~~~~l~~~~~~~~~~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 120 (364)
.||++||||.+|++++||++++..|+.++..+..||++|+||||+|||++|+++++++.|.++...++++++++..+.+.
T Consensus 1 ~~w~~kyrP~~l~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~sd~~~~~~ 80 (319)
T PLN03025 1 LPWVEKYRPTKLDDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNASDDRGIDV 80 (319)
T ss_pred CChhhhcCCCCHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecccccccHHH
Confidence 48999999999999999999999999999999999999999999999999999999998887777889999988888888
Q ss_pred HHHHHHHHHhcCccccCCccceEEEEEeCCCCCCHHHHHHHHHHHHHhccCccEEEEeeccccCchhhhccceEEEecCC
Q 017884 121 VRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPL 200 (364)
Q Consensus 121 ~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~l~~~l~sr~~~i~~~~~ 200 (364)
+++.+..++..... +. .+++++++|||+|.|+...+++|+++++.++.+++||++||..+++.++|+|||..++|+++
T Consensus 81 vr~~i~~~~~~~~~-~~-~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~~i~f~~l 158 (319)
T PLN03025 81 VRNKIKMFAQKKVT-LP-PGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRL 158 (319)
T ss_pred HHHHHHHHHhcccc-CC-CCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhhcccCCCC
Confidence 88888877654321 11 12589999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCchHHHHHhcCCCChHHHHHHHHHHHhc
Q 017884 201 EPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNE 280 (364)
Q Consensus 201 ~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~a~~~l~~~~~~~~~i~~~~v~~~~~~~~~~~~~~l~~~l~~~ 280 (364)
+.+++..++..+++++|+.++++++++++..++||+|.+++.||......+.||.++|.++++...+..++.+++++..+
T Consensus 159 ~~~~l~~~L~~i~~~egi~i~~~~l~~i~~~~~gDlR~aln~Lq~~~~~~~~i~~~~v~~~~~~~~~~~i~~~i~~~~~~ 238 (319)
T PLN03025 159 SDQEILGRLMKVVEAEKVPYVPEGLEAIIFTADGDMRQALNNLQATHSGFGFVNQENVFKVCDQPHPLHVKNIVRNCLKG 238 (319)
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHcCCCCHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999765545689999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Q 017884 281 SFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDKLQLGSIISTFTQAR 356 (364)
Q Consensus 281 ~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~i~~~l~~~~~~l~~~~~~~~~l~~l~~~l~~~~ 356 (364)
++..++..+.+++ ..|+++..|+..+++.+....+++.....++..++++++++..|.++.+||++|+++++.++
T Consensus 239 ~~~~a~~~l~~ll-~~g~~~~~Il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~a~~~~~~~~~ 313 (319)
T PLN03025 239 KFDDACDGLKQLY-DLGYSPTDIITTLFRVVKNYDMPEFLKLEYLREIGFAHMRICDGVGSLLQLSGLLAKLCLVR 313 (319)
T ss_pred CHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999998 88999999999999999877788888899999999999999999999999999999999883
No 3
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=100.00 E-value=4.1e-49 Score=335.40 Aligned_cols=317 Identities=34% Similarity=0.590 Sum_probs=287.8
Q ss_pred CCCChhhccCCCCCcchhccHHHHHHHHHHHhcCCCCcEEEeCCCCccHHHHHHHHHHHHcCCC-CCCcEEEEeCCCCCC
Q 017884 39 KASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ-YHNMILELNASDDRG 117 (364)
Q Consensus 39 ~~~~~~~~~~p~~~~~~vg~~~~~~~l~~~~~~~~~~~lll~G~~G~GKt~la~~l~~~l~~~~-~~~~~~~~~~~~~~~ 117 (364)
....|.+||||++|++++||+.++..|++.+.....||++||||||||||+.|++++++++|+. .+..+++.|+++..|
T Consensus 22 ~~~swteKYrPkt~de~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderG 101 (346)
T KOG0989|consen 22 KHRSWTEKYRPKTFDELAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERG 101 (346)
T ss_pred CccchHHHhCCCcHHhhcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccccccc
Confidence 3445999999999999999999999999999998899999999999999999999999999944 566788899999999
Q ss_pred hHHHHHHHHHHHhcCcccc----CCccceEEEEEeCCCCCCHHHHHHHHHHHHHhccCccEEEEeeccccCchhhhccce
Q 017884 118 IDVVRQQIQDFASTQSFSF----GVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCT 193 (364)
Q Consensus 118 ~~~~~~~i~~~~~~~~~~~----~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~l~~~l~sr~~ 193 (364)
+..+++.+..|+......- .....++|+|+||+|.|+.++|.+|+++||.++.+++||++||+.++++.++.|||+
T Consensus 102 isvvr~Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~SRC~ 181 (346)
T KOG0989|consen 102 ISVVREKIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVSRCQ 181 (346)
T ss_pred ccchhhhhcCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHHhhHH
Confidence 9999999888776543210 111246999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCc-hHHHHHhcCCCChHHHHH
Q 017884 194 RFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQIT-EEAVYLCTGNPLPKDIEQ 272 (364)
Q Consensus 194 ~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~a~~~l~~~~~~~~~i~-~~~v~~~~~~~~~~~~~~ 272 (364)
.+.|++++.+.+...|+.++.++|+.++++++..|+..++||+|+|+..||.+......|| ...++.+.+......+..
T Consensus 182 KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~~~S~GdLR~Ait~Lqsls~~gk~It~~~~~e~~~GvVp~~~l~~ 261 (346)
T KOG0989|consen 182 KFRFKKLKDEDIVDRLEKIASKEGVDIDDDALKLIAKISDGDLRRAITTLQSLSLLGKRITTSLVNEELAGVVPDEKLLD 261 (346)
T ss_pred HhcCCCcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHhhccCcccchHHHHHHHhccCCHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999998788899 555566666888899999
Q ss_pred HHHHHHhccHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHH
Q 017884 273 ISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKI-KMPSDVRVRLMNDLADIEYRLSFGCNDKLQLGSIIST 351 (364)
Q Consensus 273 l~~~l~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~i~~~l~~~~~~l~~~~~~~~~l~~l~~~ 351 (364)
+++....+|+....+.++++. +.|+++..++++|+..+... +.++.....+-..+.+.+.++..|.+.+++|-.|...
T Consensus 262 lle~a~S~d~~~~v~~~Rei~-~sg~~~~~lmsQLa~vi~~~~g~~d~~k~~~~~kl~~~~~~~~dg~~l~~~L~~L~~~ 340 (346)
T KOG0989|consen 262 LLELALSADTPNTVKRVREIM-RSGYSPLQLMSQLAEVIMDIIGLSDEQKAQISLKLFTRDKRLEDGEDLELALKDLLEA 340 (346)
T ss_pred HHHHHHccChHHHHHHHHHHH-HhccCHHHHHHHHHHHHHhccccchHHHHHHHHHHHhccchhhcchhHHHHHHHHHHH
Confidence 999999999999999999999 99999999999999999876 7788889999999999999999999999999999888
Q ss_pred HHHHH
Q 017884 352 FTQAR 356 (364)
Q Consensus 352 l~~~~ 356 (364)
+.+++
T Consensus 341 ~~ql~ 345 (346)
T KOG0989|consen 341 EKQLR 345 (346)
T ss_pred HHHHh
Confidence 87654
No 4
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=100.00 E-value=4.3e-45 Score=334.31 Aligned_cols=314 Identities=41% Similarity=0.761 Sum_probs=288.4
Q ss_pred CCCChhhccCCCCCcchhccHHHHHHHHHHHhcCCCCcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCCCCh
Q 017884 39 KASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGI 118 (364)
Q Consensus 39 ~~~~~~~~~~p~~~~~~vg~~~~~~~l~~~~~~~~~~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~ 118 (364)
++.||+++|||.+|++++|++.++..+..++..+..|+++|+||+|+|||++++++++.+.+.++...+++++.+...+.
T Consensus 3 ~~~~w~~kyrP~~~~~~~g~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~ 82 (319)
T PRK00440 3 MEEIWVEKYRPRTLDEIVGQEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELYGEDWRENFLELNASDERGI 82 (319)
T ss_pred ccCccchhhCCCcHHHhcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEeccccccch
Confidence 57899999999999999999999999999999998889999999999999999999999988877777888887766666
Q ss_pred HHHHHHHHHHHhcCccccCCccceEEEEEeCCCCCCHHHHHHHHHHHHHhccCccEEEEeeccccCchhhhccceEEEec
Q 017884 119 DVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFA 198 (364)
Q Consensus 119 ~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~l~~~l~sr~~~i~~~ 198 (364)
+.+.+.+..+....++ +.. ++++|+|||++.+....++.|+++++.++.++.+|++++...++.+++++||.+++|+
T Consensus 83 ~~~~~~i~~~~~~~~~-~~~--~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~~~~ 159 (319)
T PRK00440 83 DVIRNKIKEFARTAPV-GGA--PFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCAVFRFS 159 (319)
T ss_pred HHHHHHHHHHHhcCCC-CCC--CceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHhheeeeC
Confidence 6677777777766554 222 4789999999999999999999999999999999999998899999999999999999
Q ss_pred CCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCchHHHHHhcCCCChHHHHHHHHHHH
Q 017884 199 PLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLL 278 (364)
Q Consensus 199 ~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~a~~~l~~~~~~~~~i~~~~v~~~~~~~~~~~~~~l~~~l~ 278 (364)
+++.+++..++..++.++|+.+++++++.++..++||+|.+++.++.+....+.||.++|.++++...+.+++++++++.
T Consensus 160 ~l~~~ei~~~l~~~~~~~~~~i~~~al~~l~~~~~gd~r~~~~~l~~~~~~~~~it~~~v~~~~~~~~~~~i~~l~~~~~ 239 (319)
T PRK00440 160 PLKKEAVAERLRYIAENEGIEITDDALEAIYYVSEGDMRKAINALQAAAATGKEVTEEAVYKITGTARPEEIREMIELAL 239 (319)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999888777899999999999999999999999999
Q ss_pred hccHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHH
Q 017884 279 NESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDKLQLGSIISTFTQA 355 (364)
Q Consensus 279 ~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~i~~~l~~~~~~l~~~~~~~~~l~~l~~~l~~~ 355 (364)
.++...++..+.+++...|.++.+++..+...+...++++..+.++++.+.++|+++++|.++.++||.|++++|..
T Consensus 240 ~~~~~~a~~~l~~ll~~~g~~~~~i~~~l~~~~~~~~~~~~~l~~~~~~~~~~d~~~k~g~~~~~~le~~i~~~~~~ 316 (319)
T PRK00440 240 NGDFTEAREKLRDLMIDYGLSGEDIIKQIHREVWSLDIPEELKVELIDAIGEADFRITEGANERIQLEALLAKLALL 316 (319)
T ss_pred cCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHh
Confidence 99999999999999866899999999999877655689999999999999999999999999999999999999875
No 5
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=3.5e-44 Score=337.39 Aligned_cols=313 Identities=20% Similarity=0.340 Sum_probs=280.4
Q ss_pred CCCChhhccCCCCCcchhccHHHHHHHHHHHhcCCCCc-EEEeCCCCccHHHHHHHHHHHHcCCC---------------
Q 017884 39 KASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPH-LLLYGPPGTGKTSTILAVARKLYGAQ--------------- 102 (364)
Q Consensus 39 ~~~~~~~~~~p~~~~~~vg~~~~~~~l~~~~~~~~~~~-lll~G~~G~GKt~la~~l~~~l~~~~--------------- 102 (364)
...+|.++|||.+|++++||+.++..|.+++..++.+| +|||||+|+|||++|+.+++.+.|..
T Consensus 3 ~~~~~~~kyRP~~~~diiGq~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~ 82 (451)
T PRK06305 3 SYQVSSRKYRPQTFSEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCK 82 (451)
T ss_pred chHHHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHH
Confidence 35789999999999999999999999999999999988 79999999999999999999998852
Q ss_pred -----CCCcEEEEeCCCCCChHHHHHHHHHHHhcCccccCCccceEEEEEeCCCCCCHHHHHHHHHHHHHhccCccEEEE
Q 017884 103 -----YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALI 177 (364)
Q Consensus 103 -----~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~Il~ 177 (364)
.+.+++++++....+.+.+++..+... ..+. + ++++||||||+|.|+...++.|++++++++.++.+|++
T Consensus 83 ~i~~~~~~d~~~i~g~~~~gid~ir~i~~~l~-~~~~-~---~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~Il~ 157 (451)
T PRK06305 83 EISSGTSLDVLEIDGASHRGIEDIRQINETVL-FTPS-K---SRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLA 157 (451)
T ss_pred HHhcCCCCceEEeeccccCCHHHHHHHHHHHH-hhhh-c---CCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEEEE
Confidence 234577777766667777776544332 2111 2 25899999999999999999999999999999999999
Q ss_pred eeccccCchhhhccceEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHh-cccCchH
Q 017884 178 CNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMA-SQQITEE 256 (364)
Q Consensus 178 ~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~a~~~l~~~~~~-~~~i~~~ 256 (364)
++...++.++|++||..++|.+++.+++..|+..+++++|+.+++++++.|+..++||+|.++++++++..+ .+.|+.+
T Consensus 158 t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~~i~~~al~~L~~~s~gdlr~a~~~Lekl~~~~~~~It~~ 237 (451)
T PRK06305 158 TTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGIETSREALLPIARAAQGSLRDAESLYDYVVGLFPKSLDPD 237 (451)
T ss_pred eCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCcCHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999988765 3569999
Q ss_pred HHHHhcCCCChHHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc--------------CCChHHHH
Q 017884 257 AVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKI--------------KMPSDVRV 322 (364)
Q Consensus 257 ~v~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~~~~--------------~~~~~~~~ 322 (364)
+|.++++....+++|++++++..++..+++.++.++. ..|.++..++..+.+++|.+ .++.+.+.
T Consensus 238 ~V~~l~~~~~~~~vf~L~~ai~~~d~~~al~~l~~L~-~~g~~~~~iL~~L~~~fR~ll~vk~~~~~~~~a~~~s~~~L~ 316 (451)
T PRK06305 238 SVAKALGLLSQDSLYTLDEAITTQNYAQALEPVTDAM-NSGVAPAHFLHDLTLFFRNILLKQYNKQLSSVATKYSSEQLL 316 (451)
T ss_pred HHHHHHCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHH-HcCcCHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhCCHHHHH
Confidence 9999999999999999999999999999999999998 88999999999888887764 57888999
Q ss_pred HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH
Q 017884 323 RLMNDLADIEYRLSFGCNDKLQLGSIISTFTQARS 357 (364)
Q Consensus 323 ~i~~~l~~~~~~l~~~~~~~~~l~~l~~~l~~~~~ 357 (364)
++++.+.++++++++|.++++.+|.++.+++.++.
T Consensus 317 ~ii~~l~e~d~~lk~~~~~k~~lE~lll~l~~~~~ 351 (451)
T PRK06305 317 EIIDFLGESAKHIQLTIFEKTFLETVIIHLIRIYQ 351 (451)
T ss_pred HHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999997654
No 6
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=2.8e-44 Score=332.39 Aligned_cols=311 Identities=19% Similarity=0.308 Sum_probs=268.6
Q ss_pred CCCCChhhccCCCCCcchhccHHHHHHHHHHHhcCCCCc-EEEeCCCCccHHHHHHHHHHHHcCCC--------------
Q 017884 38 IKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPH-LLLYGPPGTGKTSTILAVARKLYGAQ-------------- 102 (364)
Q Consensus 38 ~~~~~~~~~~~p~~~~~~vg~~~~~~~l~~~~~~~~~~~-lll~G~~G~GKt~la~~l~~~l~~~~-------------- 102 (364)
.+..||++||||.+|++++||++++..|..++..++.+| ++|+||+|+|||++|+.+++.+.|..
T Consensus 3 ~~~~~L~~KyRP~~f~dvVGQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC~ 82 (484)
T PRK14956 3 GTHEVLSRKYRPQFFRDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCL 82 (484)
T ss_pred CCcchhHHHhCCCCHHHHhChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHHH
Confidence 346799999999999999999999999999999999998 79999999999999999999998853
Q ss_pred -----CCCcEEEEeCCCCCChHHHHHHHHHHHhcCccccCCccceEEEEEeCCCCCCHHHHHHHHHHHHHhccCccEEEE
Q 017884 103 -----YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALI 177 (364)
Q Consensus 103 -----~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~Il~ 177 (364)
...+++++++....+.+.+++.+...... +. . ++++|+||||+|.|+..++++|++.||+++.+++||++
T Consensus 83 ~i~~g~~~dviEIdaas~~gVd~IReL~e~l~~~-p~--~--g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILa 157 (484)
T PRK14956 83 EITKGISSDVLEIDAASNRGIENIRELRDNVKFA-PM--G--GKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILA 157 (484)
T ss_pred HHHccCCccceeechhhcccHHHHHHHHHHHHhh-hh--c--CCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEee
Confidence 23457788887777888888766554322 21 1 25899999999999999999999999999999999999
Q ss_pred eeccccCchhhhccceEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHh-cccCchH
Q 017884 178 CNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMA-SQQITEE 256 (364)
Q Consensus 178 ~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~a~~~l~~~~~~-~~~i~~~ 256 (364)
|+.++++.++|+|||+.+.|.+++.+++.+++..++.++|+.++++++..|++.++|++|.|++.|+.+... .+.||.+
T Consensus 158 Tte~~kI~~TI~SRCq~~~f~~ls~~~i~~~L~~i~~~Egi~~e~eAL~~Ia~~S~Gd~RdAL~lLeq~i~~~~~~it~~ 237 (484)
T PRK14956 158 TTEFHKIPETILSRCQDFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIAKKGDGSVRDMLSFMEQAIVFTDSKLTGV 237 (484)
T ss_pred cCChhhccHHHHhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCChHHHHHHHHHHHHHhCCCCcCHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999876543 4589999
Q ss_pred HHHHhcCCCChHHHHHHHHHHHhccH-HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc---------------------
Q 017884 257 AVYLCTGNPLPKDIEQISYWLLNESF-ADSFKRISEMKMRKGLALVDIVREVTMFVFKI--------------------- 314 (364)
Q Consensus 257 ~v~~~~~~~~~~~~~~l~~~l~~~~~-~~~~~~l~~l~~~~~~~~~~i~~~l~~~~~~~--------------------- 314 (364)
.|.++++......++++++++.+++. .+++.++.+++ ..|.++..++..+..++|++
T Consensus 238 ~V~~~lg~~~~~~~~~l~~si~~~d~~~~al~~l~~l~-~~G~d~~~~~~~l~~~~r~l~~~~~~~~~~~~~~~~~~~~~ 316 (484)
T PRK14956 238 KIRKMIGYHGIEFLTSFIKSLIDPDNHSKSLEILESLY-QEGQDIYKFLWDSIEFTHTLNLIRDSLADRESVNFPKEDLQ 316 (484)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHcCCcHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHhhcccchhhccCCHHHHH
Confidence 99999999999999999999999875 68999999999 99999999999999999876
Q ss_pred -------CCChHHHHHHHHHH----HHH-HHHHhcCCChHHHHHHHHHHHHH
Q 017884 315 -------KMPSDVRVRLMNDL----ADI-EYRLSFGCNDKLQLGSIISTFTQ 354 (364)
Q Consensus 315 -------~~~~~~~~~i~~~l----~~~-~~~l~~~~~~~~~l~~l~~~l~~ 354 (364)
.++...+.+++..+ ..+ +.+++...++++.+|-.+.++|.
T Consensus 317 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~s~~~r~~~E~~~~~l~~ 368 (484)
T PRK14956 317 KMKSDFENVDSSKLNFLSGKLFEIYEKIKTIRLRNSFEIKVFTEIQIKKLVE 368 (484)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhhccCCCchHHHHHHHHHHhc
Confidence 22333344443333 222 45667788999999999999873
No 7
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=7.9e-44 Score=335.98 Aligned_cols=308 Identities=26% Similarity=0.380 Sum_probs=277.2
Q ss_pred CChhhccCCCCCcchhccHHHHHHHHHHHhcCCCCc-EEEeCCCCccHHHHHHHHHHHHcCCC-----------------
Q 017884 41 SPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPH-LLLYGPPGTGKTSTILAVARKLYGAQ----------------- 102 (364)
Q Consensus 41 ~~~~~~~~p~~~~~~vg~~~~~~~l~~~~~~~~~~~-lll~G~~G~GKt~la~~l~~~l~~~~----------------- 102 (364)
.+|.+||||.+|++++||+++++.|...+..++.+| +|||||+|+|||++|+++++.+.|..
T Consensus 2 ~~l~~KyRP~~fdeiiGqe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~ 81 (535)
T PRK08451 2 QALALKYRPKHFDELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSAL 81 (535)
T ss_pred ccHHHHHCCCCHHHccCcHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHh
Confidence 479999999999999999999999999999999999 69999999999999999999998753
Q ss_pred --CCCcEEEEeCCCCCChHHHHHHHHHHHhcCccccCCccceEEEEEeCCCCCCHHHHHHHHHHHHHhccCccEEEEeec
Q 017884 103 --YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQ 180 (364)
Q Consensus 103 --~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~ 180 (364)
.+..++++++....+++.+++.+..... .|+ ++ +++|+||||+|.|+.+++++|+++||+||.+++||++++.
T Consensus 82 ~~~h~dv~eldaas~~gId~IRelie~~~~-~P~-~~---~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ttd 156 (535)
T PRK08451 82 ENRHIDIIEMDAASNRGIDDIRELIEQTKY-KPS-MA---RFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTD 156 (535)
T ss_pred hcCCCeEEEeccccccCHHHHHHHHHHHhh-Ccc-cC---CeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEECC
Confidence 3456788887776788999888765432 232 33 5899999999999999999999999999999999999999
Q ss_pred cccCchhhhccceEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhc-ccCchHHHH
Q 017884 181 VNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMAS-QQITEEAVY 259 (364)
Q Consensus 181 ~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~a~~~l~~~~~~~-~~i~~~~v~ 259 (364)
+.++.++++|||..++|.+++.+++..|+..++.++|+.++++++..|++.++||+|.+++.++++..+. +.||.++|.
T Consensus 157 ~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~Al~~Ia~~s~GdlR~alnlLdqai~~~~~~It~~~V~ 236 (535)
T PRK08451 157 PLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILARSGNGSLRDTLTLLDQAIIYCKNAITESKVA 236 (535)
T ss_pred hhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCCCCHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999998877765 589999999
Q ss_pred HhcCCCChHHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc------CCChHHHHHHHHHHHHHHH
Q 017884 260 LCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKI------KMPSDVRVRLMNDLADIEY 333 (364)
Q Consensus 260 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~~~~------~~~~~~~~~i~~~l~~~~~ 333 (364)
.+++......++.+++++..++...++.++.++. |.++.+++..+..+++.. .++...+.+++..+.+.+.
T Consensus 237 ~~lg~~~~~~I~~li~ai~~~d~~~a~~~l~~L~---g~~~~~~l~~l~~~l~~~~~~~~~~~~l~~l~r~~riL~~~k~ 313 (535)
T PRK08451 237 DMLGLLDPSKLEDFFQAILNQDKEKLFELLKELE---DYEAEMVLDEMMLFLKEKFLSKDSEFSILLYERFFRILSSAKS 313 (535)
T ss_pred HHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998874 688999999999998843 2344557788999999999
Q ss_pred HHhcCCChHHHHHHHHHHHHHHH
Q 017884 334 RLSFGCNDKLQLGSIISTFTQAR 356 (364)
Q Consensus 334 ~l~~~~~~~~~l~~l~~~l~~~~ 356 (364)
.+..|.+++++++.++.+++.+.
T Consensus 314 ~l~~g~~~~i~l~~~~~~~~~~~ 336 (535)
T PRK08451 314 LLKEGADDGFVLLLMLFKMKEAL 336 (535)
T ss_pred HHHhCCCcHHHHHHHHHHHHHhc
Confidence 99999999999999999999754
No 8
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=9.9e-44 Score=335.37 Aligned_cols=315 Identities=20% Similarity=0.289 Sum_probs=281.4
Q ss_pred CCCCCChhhccCCCCCcchhccHHHHHHHHHHHhcCCCCc-EEEeCCCCccHHHHHHHHHHHHcCCC-------------
Q 017884 37 DIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPH-LLLYGPPGTGKTSTILAVARKLYGAQ------------- 102 (364)
Q Consensus 37 ~~~~~~~~~~~~p~~~~~~vg~~~~~~~l~~~~~~~~~~~-lll~G~~G~GKt~la~~l~~~l~~~~------------- 102 (364)
+-+..||.++|||.+|++++||+.++..|...+..++.+| ++|+||+|+|||++|+.+++.++|..
T Consensus 5 ~~~y~~la~kyRP~~f~dliGq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~ 84 (507)
T PRK06645 5 SNQYIPFARKYRPSNFAELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQ 84 (507)
T ss_pred cccccchhhhhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCC
Confidence 4557899999999999999999999999999999998887 89999999999999999999998853
Q ss_pred ----------CCCcEEEEeCCCCCChHHHHHHHHHHHhcCccccCCccceEEEEEeCCCCCCHHHHHHHHHHHHHhccCc
Q 017884 103 ----------YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNT 172 (364)
Q Consensus 103 ----------~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~ 172 (364)
.+.+++++++....+++.+++.+... ...|+ ++ +++|+||||+|.++...++.|++++++++.++
T Consensus 85 C~~C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a-~~~P~-~~---~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~ 159 (507)
T PRK06645 85 CTNCISFNNHNHPDIIEIDAASKTSVDDIRRIIESA-EYKPL-QG---KHKIFIIDEVHMLSKGAFNALLKTLEEPPPHI 159 (507)
T ss_pred ChHHHHHhcCCCCcEEEeeccCCCCHHHHHHHHHHH-Hhccc-cC---CcEEEEEEChhhcCHHHHHHHHHHHhhcCCCE
Confidence 23568888887778899999877654 44454 44 58999999999999999999999999999999
Q ss_pred cEEEEeeccccCchhhhccceEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcc-
Q 017884 173 RFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQ- 251 (364)
Q Consensus 173 ~~Il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~a~~~l~~~~~~~~- 251 (364)
+||++++..+++.+++++||..++|.+++.+++..|+..+++++|+.+++++++.|++.++|++|.++++++++..+.+
T Consensus 160 vfI~aTte~~kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi~ie~eAL~~Ia~~s~GslR~al~~Ldkai~~~~~ 239 (507)
T PRK06645 160 IFIFATTEVQKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAYKSEGSARDAVSILDQAASMSAK 239 (507)
T ss_pred EEEEEeCChHHhhHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998866543
Q ss_pred ---cCchHHHHHhcCCCChHHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc--------------
Q 017884 252 ---QITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKI-------------- 314 (364)
Q Consensus 252 ---~i~~~~v~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~~~~-------------- 314 (364)
.||.++|.++++.....++|++++++..++...++..++++. ..|.++..++..+..+++.+
T Consensus 240 ~~~~It~~~V~~llg~~~~~~if~L~~ai~~~d~~~Al~~l~~L~-~~g~~~~~~l~~l~~~~~~l~~~k~~~~~~~~~~ 318 (507)
T PRK06645 240 SDNIISPQVINQMLGLVDSSVIIEFVEYIIHRETEKAINLINKLY-GSSVNLEIFIESVSDFIAYLNKVKMLPNYSLPIY 318 (507)
T ss_pred CCCCcCHHHHHHHHCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHhccccccccc
Confidence 799999999999999999999999999999999999999999 99999999988776666533
Q ss_pred ------------CCChHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH
Q 017884 315 ------------KMPSDVRVRLMNDLADIEYRLSFGCNDKLQLGSIISTFTQARS 357 (364)
Q Consensus 315 ------------~~~~~~~~~i~~~l~~~~~~l~~~~~~~~~l~~l~~~l~~~~~ 357 (364)
.++...+..+++.+.+....++...++++.+|-.+.+++-+..
T Consensus 319 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~l~r~~~~~~ 373 (507)
T PRK06645 319 ESFNDRTKSILDKISLPHLSILWQIYNKGVGEIKISYNQLTETEMLVIKSIYSTS 373 (507)
T ss_pred hhHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhcc
Confidence 2344566788888999999999999999999999999986543
No 9
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=1e-43 Score=340.03 Aligned_cols=307 Identities=20% Similarity=0.276 Sum_probs=272.4
Q ss_pred ChhhccCCCCCcchhccHHHHHHHHHHHhcCCCCc-EEEeCCCCccHHHHHHHHHHHHcCCC------------------
Q 017884 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPH-LLLYGPPGTGKTSTILAVARKLYGAQ------------------ 102 (364)
Q Consensus 42 ~~~~~~~p~~~~~~vg~~~~~~~l~~~~~~~~~~~-lll~G~~G~GKt~la~~l~~~l~~~~------------------ 102 (364)
.|.+||||.+|++++||+++++.|++++..++.+| +||+||+|+|||++|+.+++.++|..
T Consensus 2 al~~kyRP~~f~eivGq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~ 81 (584)
T PRK14952 2 ALYRKYRPATFAEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAP 81 (584)
T ss_pred cHHHHhCCCcHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhc
Confidence 37799999999999999999999999999999999 79999999999999999999999752
Q ss_pred ---CCCcEEEEeCCCCCChHHHHHHHHHHHhcCccccCCccceEEEEEeCCCCCCHHHHHHHHHHHHHhccCccEEEEee
Q 017884 103 ---YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICN 179 (364)
Q Consensus 103 ---~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~ 179 (364)
.+.+++++++....+++.+++.+... ...++ ++ .++|+||||+|.|+..++++|+++||+++.++.||++|+
T Consensus 82 ~~~~~~dvieidaas~~gvd~iRel~~~~-~~~P~-~~---~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tt 156 (584)
T PRK14952 82 NGPGSIDVVELDAASHGGVDDTRELRDRA-FYAPA-QS---RYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATT 156 (584)
T ss_pred ccCCCceEEEeccccccCHHHHHHHHHHH-Hhhhh-cC---CceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeC
Confidence 23567888887777889988765544 33343 33 589999999999999999999999999999999999999
Q ss_pred ccccCchhhhccceEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhc--ccCchHH
Q 017884 180 QVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMAS--QQITEEA 257 (364)
Q Consensus 180 ~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~a~~~l~~~~~~~--~~i~~~~ 257 (364)
.++++.++|+|||++++|.+++.+++.+|+..+++++|+.++++++..++..++|++|.++++|+++..+. +.||.++
T Consensus 157 e~~kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~i~~~al~~Ia~~s~GdlR~aln~Ldql~~~~~~~~It~~~ 236 (584)
T PRK14952 157 EPEKVLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGVVVDDAVYPLVIRAGGGSPRDTLSVLDQLLAGAADTHVTYQR 236 (584)
T ss_pred ChHhhHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhccCCCCcCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999988764 5899999
Q ss_pred HHHhcCCCChHHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc-----------------------
Q 017884 258 VYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKI----------------------- 314 (364)
Q Consensus 258 v~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~~~~----------------------- 314 (364)
+..+++......++++++++..++...++..+.++. ..|.++..++..|.+++|++
T Consensus 237 v~~llg~~~~~~i~~lv~al~~~d~~~al~~l~~l~-~~g~d~~~~l~~L~~~~RdLll~k~~~~~~~~~l~~~~~~~~~ 315 (584)
T PRK14952 237 ALGLLGATDVALIDDAVDALAADDAAALFGAIESVI-DAGHDPRRFATDLLERFRDLIVLQAVPDAAARGVVDAPEDVLE 315 (584)
T ss_pred HHHHHCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHhhcchhhhcccccCCHHHHH
Confidence 999999999999999999999999999999999998 89999999999998888765
Q ss_pred -------CCChHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHH
Q 017884 315 -------KMPSDVRVRLMNDLADIEYRLSFGCNDKLQLGSIISTFTQ 354 (364)
Q Consensus 315 -------~~~~~~~~~i~~~l~~~~~~l~~~~~~~~~l~~l~~~l~~ 354 (364)
+++...+.++++.+.+....++.+.++++.||.++.++|.
T Consensus 316 ~l~~qa~~~s~~~L~~~i~~l~~~~~~~~~~~~~rl~LE~llikl~~ 362 (584)
T PRK14952 316 RMREQAARIGLATLTRYAEVVQAGLGEMRGATAPRLLLEVVCARLLL 362 (584)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHhc
Confidence 1344556677775555555566667999999999999984
No 10
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=1e-43 Score=344.43 Aligned_cols=313 Identities=22% Similarity=0.320 Sum_probs=283.8
Q ss_pred CCCCChhhccCCCCCcchhccHHHHHHHHHHHhcCCCCc-EEEeCCCCccHHHHHHHHHHHHcCCC--------------
Q 017884 38 IKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPH-LLLYGPPGTGKTSTILAVARKLYGAQ-------------- 102 (364)
Q Consensus 38 ~~~~~~~~~~~p~~~~~~vg~~~~~~~l~~~~~~~~~~~-lll~G~~G~GKt~la~~l~~~l~~~~-------------- 102 (364)
++..+|++||||.+|++++||+++++.|..++..++.+| +|||||+|+|||++|+.+++.+.|..
T Consensus 2 ~~~~~~~~kyRP~~f~~viGq~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC 81 (614)
T PRK14971 2 ENYIVSARKYRPSTFESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESC 81 (614)
T ss_pred chhHHHHHHHCCCCHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHH
Confidence 456789999999999999999999999999999999999 89999999999999999999998742
Q ss_pred ------CCCcEEEEeCCCCCChHHHHHHHHHHHhcCccccCCccceEEEEEeCCCCCCHHHHHHHHHHHHHhccCccEEE
Q 017884 103 ------YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFAL 176 (364)
Q Consensus 103 ------~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~Il 176 (364)
.+.++.++++....+.+.+++.+... ...|+ ++ +++|+||||+|.|+...+++|+++||+|+.+++||+
T Consensus 82 ~~~~~~~~~n~~~ld~~~~~~vd~Ir~li~~~-~~~P~-~~---~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifIL 156 (614)
T PRK14971 82 VAFNEQRSYNIHELDAASNNSVDDIRNLIEQV-RIPPQ-IG---KYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFIL 156 (614)
T ss_pred HHHhcCCCCceEEecccccCCHHHHHHHHHHH-hhCcc-cC---CcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEEE
Confidence 24567788887666788888877654 44444 44 599999999999999999999999999999999999
Q ss_pred EeeccccCchhhhccceEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhc-ccCch
Q 017884 177 ICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMAS-QQITE 255 (364)
Q Consensus 177 ~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~a~~~l~~~~~~~-~~i~~ 255 (364)
+++..+++.++|+|||.+++|.+++.+++..|+..++.++|+.+++++++.|+..++||+|.++++++++..+. +.|+.
T Consensus 157 ~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~i~~~al~~La~~s~gdlr~al~~Lekl~~y~~~~It~ 236 (614)
T PRK14971 157 ATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGITAEPEALNVIAQKADGGMRDALSIFDQVVSFTGGNITY 236 (614)
T ss_pred EeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCccH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999987665 36999
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc---------------------
Q 017884 256 EAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKI--------------------- 314 (364)
Q Consensus 256 ~~v~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~~~~--------------------- 314 (364)
++|.+.+.....+++|++++++..++...++..+++++ ..|+++..++..|.+++|.+
T Consensus 237 ~~V~~~l~~~~~~~iF~L~dai~~~~~~~al~ll~~Ll-~~g~~~~~iL~~L~~~fRdlL~~K~~~~~~ll~v~~~~~~~ 315 (614)
T PRK14971 237 KSVIENLNILDYDYYFRLTDALLAGKVSDSLLLFDEIL-NKGFDGSHFITGLASHFRDLLVCKDAATLQLLEVGESIRQR 315 (614)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHhhcccccccccCCHHHHHH
Confidence 99999999999999999999999999999999999999 89999999999998888765
Q ss_pred ------CCChHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Q 017884 315 ------KMPSDVRVRLMNDLADIEYRLSFGCNDKLQLGSIISTFTQAR 356 (364)
Q Consensus 315 ------~~~~~~~~~i~~~l~~~~~~l~~~~~~~~~l~~l~~~l~~~~ 356 (364)
+++...+..+++.+.++|+.++++.|.++.+|.++.++|...
T Consensus 316 ~~~qa~~~s~~~L~~~l~~l~e~d~~lK~~~n~~l~lE~lllkL~~~~ 363 (614)
T PRK14971 316 YLEQAQKCPMSFLYRALKLCNQCDLNYRASKNKRLLVELTLIQLAQLT 363 (614)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHhccC
Confidence 455667889999999999999999999999999999999764
No 11
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=1.8e-43 Score=340.34 Aligned_cols=315 Identities=22% Similarity=0.318 Sum_probs=283.6
Q ss_pred CCCCCCCChhhccCCCCCcchhccHHHHHHHHHHHhcCCCCc-EEEeCCCCccHHHHHHHHHHHHcCCCC----------
Q 017884 35 PPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPH-LLLYGPPGTGKTSTILAVARKLYGAQY---------- 103 (364)
Q Consensus 35 ~~~~~~~~~~~~~~p~~~~~~vg~~~~~~~l~~~~~~~~~~~-lll~G~~G~GKt~la~~l~~~l~~~~~---------- 103 (364)
.......+|.+||||.+|++++||+.+++.|.+++..++.+| +||+||+|+|||++|+.+++.++|...
T Consensus 6 ~~~~~y~~la~KyRP~~f~dliGq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~ 85 (598)
T PRK09111 6 AAATPYRVLARKYRPQTFDDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDL 85 (598)
T ss_pred CCCccchhHHhhhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCcccc
Confidence 344456889999999999999999999999999999999998 899999999999999999999988532
Q ss_pred --------------CCcEEEEeCCCCCChHHHHHHHHHHHhcCccccCCccceEEEEEeCCCCCCHHHHHHHHHHHHHhc
Q 017884 104 --------------HNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYT 169 (364)
Q Consensus 104 --------------~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~ 169 (364)
+.+++++++....+++.+++.+.. +...++ ++ +++||||||+|.|+...++.|+++||+|+
T Consensus 86 cg~c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~-~~~~P~-~a---~~KVvIIDEad~Ls~~a~naLLKtLEePp 160 (598)
T PRK09111 86 CGVGEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIES-VRYRPV-SA---RYKVYIIDEVHMLSTAAFNALLKTLEEPP 160 (598)
T ss_pred CcccHHHHHHhcCCCCceEEecccccCCHHHHHHHHHH-HHhchh-cC---CcEEEEEEChHhCCHHHHHHHHHHHHhCC
Confidence 245777877777789999986654 455554 44 48999999999999999999999999999
Q ss_pred cCccEEEEeeccccCchhhhccceEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Q 017884 170 KNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMA 249 (364)
Q Consensus 170 ~~~~~Il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~a~~~l~~~~~~ 249 (364)
.+++|||+++..+++.++++|||+.++|.+++.+++..|+.++++++|+.+++++++.|+..++|++|.++++++++..+
T Consensus 161 ~~~~fIl~tte~~kll~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~i~~eAl~lIa~~a~Gdlr~al~~Ldkli~~ 240 (598)
T PRK09111 161 PHVKFIFATTEIRKVPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVEVEDEALALIARAAEGSVRDGLSLLDQAIAH 240 (598)
T ss_pred CCeEEEEEeCChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999887654
Q ss_pred c-ccCchHHHHHhcCCCChHHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc--------------
Q 017884 250 S-QQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKI-------------- 314 (364)
Q Consensus 250 ~-~~i~~~~v~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~~~~-------------- 314 (364)
. +.||.++|..+++......++++++++..++...++..+.++. ..|.++..++..+.++++.+
T Consensus 241 g~g~It~e~V~~llg~~~~~~if~L~~ai~~gd~~~Al~~l~~l~-~~G~~p~~il~~L~~~~r~L~~vK~~~~~a~~~~ 319 (598)
T PRK09111 241 GAGEVTAEAVRDMLGLADRARVIDLFEALMRGDVAAALAEFRAQY-DAGADPVVVLTDLAEFTHLVTRLKIVPDAAEDPS 319 (598)
T ss_pred cCCCcCHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHhccchhhccc
Confidence 3 5899999999999999999999999999999999999999988 89999999999988777743
Q ss_pred --------------CCChHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHH
Q 017884 315 --------------KMPSDVRVRLMNDLADIEYRLSFGCNDKLQLGSIISTFTQA 355 (364)
Q Consensus 315 --------------~~~~~~~~~i~~~l~~~~~~l~~~~~~~~~l~~l~~~l~~~ 355 (364)
+++...+.++++.+.+.++.++++.|+.+.+|.++.++|.+
T Consensus 320 ~~p~~~~kl~~~A~~~s~~~L~r~~q~Ll~~~~~vK~~~n~~lalE~lLlrl~~~ 374 (598)
T PRK09111 320 LSEAERTRGAEFAKKLSMRVLSRLWQMLLKGIEEVQGAPRPLAAAEMVLIRLAYA 374 (598)
T ss_pred CCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhh
Confidence 44566789999999999999999999999999999999854
No 12
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=1.4e-43 Score=336.76 Aligned_cols=310 Identities=18% Similarity=0.282 Sum_probs=274.4
Q ss_pred CCChhhccCCCCCcchhccHHHHHHHHHHHhcCCCCc-EEEeCCCCccHHHHHHHHHHHHcCCC----------------
Q 017884 40 ASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPH-LLLYGPPGTGKTSTILAVARKLYGAQ---------------- 102 (364)
Q Consensus 40 ~~~~~~~~~p~~~~~~vg~~~~~~~l~~~~~~~~~~~-lll~G~~G~GKt~la~~l~~~l~~~~---------------- 102 (364)
..+|++||||.+|++++||+++++.|.+++..++.+| +||+||+|+|||++|+.+++.++|..
T Consensus 3 y~~l~~kyRP~~f~divGq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i 82 (509)
T PRK14958 3 HQVLARKWRPRCFQEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREI 82 (509)
T ss_pred chhHHHHHCCCCHHHhcCCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHH
Confidence 4689999999999999999999999999999999999 79999999999999999999998853
Q ss_pred ---CCCcEEEEeCCCCCChHHHHHHHHHHHhcCccccCCccceEEEEEeCCCCCCHHHHHHHHHHHHHhccCccEEEEee
Q 017884 103 ---YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICN 179 (364)
Q Consensus 103 ---~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~ 179 (364)
...+++++++....+++.+++.+...... +. .++++|+||||+|.|+...+++|+++||+||.+++||++|+
T Consensus 83 ~~g~~~d~~eidaas~~~v~~iR~l~~~~~~~-p~----~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlatt 157 (509)
T PRK14958 83 DEGRFPDLFEVDAASRTKVEDTRELLDNIPYA-PT----KGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATT 157 (509)
T ss_pred hcCCCceEEEEcccccCCHHHHHHHHHHHhhc-cc----cCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEEC
Confidence 23468889988778899999877664432 21 22589999999999999999999999999999999999999
Q ss_pred ccccCchhhhccceEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHh-cccCchHHH
Q 017884 180 QVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMA-SQQITEEAV 258 (364)
Q Consensus 180 ~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~a~~~l~~~~~~-~~~i~~~~v 258 (364)
.+.++.++++|||..++|.+++.+++..++..+++++|+.++++++..|++.++|++|.++++++++..+ .+.||.++|
T Consensus 158 d~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~~~~~al~~ia~~s~GslR~al~lLdq~ia~~~~~It~~~V 237 (509)
T PRK14958 158 DHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLARAANGSVRDALSLLDQSIAYGNGKVLIADV 237 (509)
T ss_pred ChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHHhcCCCCcCHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999877665 368999999
Q ss_pred HHhcCCCChHHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc-----------------------C
Q 017884 259 YLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKI-----------------------K 315 (364)
Q Consensus 259 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~~~~-----------------------~ 315 (364)
..+++......++.+++++..++...++..++++. ..|.++..++..+...++++ .
T Consensus 238 ~~~lg~~~~~~i~~ll~al~~~d~~~~l~~~~~l~-~~g~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (509)
T PRK14958 238 KTMLGTIEPLLLFDILEALAAKAGDRLLGCVTRLV-EQGVDFSNALADLLSLLHQIAIIQTVPEALIENDSEQLRQLAKL 316 (509)
T ss_pred HHHHCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHhhCccccccchHHHHHHHHHh
Confidence 99999999999999999999999999999999998 99999988888887777654 2
Q ss_pred CChHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHH
Q 017884 316 MPSDVRVRLMNDLADIEYRLSFGCNDKLQLGSIISTFTQA 355 (364)
Q Consensus 316 ~~~~~~~~i~~~l~~~~~~l~~~~~~~~~l~~l~~~l~~~ 355 (364)
++.+.+..++..+......++...++++.+|-.+.+++..
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 356 (509)
T PRK14958 317 LDREDVQLFYQIGLIGQRDLAYSPTPQTGFEMTLLRMLAF 356 (509)
T ss_pred CCHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhc
Confidence 3333444556666667778888889999999999998854
No 13
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=2.4e-43 Score=329.96 Aligned_cols=305 Identities=21% Similarity=0.301 Sum_probs=273.7
Q ss_pred hhhccCCCCCcchhccHHHHHHHHHHHhcCCCCc-EEEeCCCCccHHHHHHHHHHHHcCCC-------------------
Q 017884 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPH-LLLYGPPGTGKTSTILAVARKLYGAQ------------------- 102 (364)
Q Consensus 43 ~~~~~~p~~~~~~vg~~~~~~~l~~~~~~~~~~~-lll~G~~G~GKt~la~~l~~~l~~~~------------------- 102 (364)
|.+||||.+|+|++||+.+++.|.+.+..++.+| ++|+||+|+|||++|+.+++.++|..
T Consensus 3 la~KyRP~~f~dliGQe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~ 82 (491)
T PRK14964 3 LALKYRPSSFKDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNS 82 (491)
T ss_pred hhHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhcc
Confidence 7899999999999999999999999999999997 99999999999999999999998742
Q ss_pred CCCcEEEEeCCCCCChHHHHHHHHHHHhcCccccCCccceEEEEEeCCCCCCHHHHHHHHHHHHHhccCccEEEEeeccc
Q 017884 103 YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVN 182 (364)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~ 182 (364)
.+.+++++++++..+++.+++.+... ...|+ ++ +++|+||||+|.|+..++++|+++||+|++++.||++++..+
T Consensus 83 ~~~Dv~eidaas~~~vddIR~Iie~~-~~~P~-~~---~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIlatte~~ 157 (491)
T PRK14964 83 NHPDVIEIDAASNTSVDDIKVILENS-CYLPI-SS---KFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATTEVK 157 (491)
T ss_pred CCCCEEEEecccCCCHHHHHHHHHHH-Hhccc-cC---CceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEEeCChH
Confidence 35678999998888999999877664 44454 33 599999999999999999999999999999999999999999
Q ss_pred cCchhhhccceEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhc-ccCchHHHHHh
Q 017884 183 KIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMAS-QQITEEAVYLC 261 (364)
Q Consensus 183 ~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~a~~~l~~~~~~~-~~i~~~~v~~~ 261 (364)
++.++++|||+.+.|.+++.+++.+|+..+++++|+.+++++++.|++.++|++|.++++++++..+. +.||.++|.++
T Consensus 158 Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~lIa~~s~GslR~alslLdqli~y~~~~It~e~V~~l 237 (491)
T PRK14964 158 KIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAENSSGSMRNALFLLEQAAIYSNNKISEKSVRDL 237 (491)
T ss_pred HHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999887764 58999999999
Q ss_pred cCCCChHHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc-------------------------CC
Q 017884 262 TGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKI-------------------------KM 316 (364)
Q Consensus 262 ~~~~~~~~~~~l~~~l~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~~~~-------------------------~~ 316 (364)
++......++++++++.+++...++..+.++. ..| ++..++..+..+++.+ .+
T Consensus 238 lg~~~~~~If~L~~aI~~~d~~~Al~~l~~Ll-~~g-~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (491)
T PRK14964 238 LGCVDKHILEDLVEAILLGDAQSALNVFRELC-NTS-NPVIILEGMLQIIYEICYFSITKEIDFLLGEDLITRIKSLKIG 315 (491)
T ss_pred HccCCHHHHHHHHHHHHCCCHHHHHHHHHHHH-hcC-CHHHHHHHHHHHHHHHHHHhcCccccccCCHHHHHHHHHHhCC
Confidence 99999999999999999999999999999998 555 5777887776665543 13
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHH
Q 017884 317 PSDVRVRLMNDLADIEYRLSFGCNDKLQLGSIISTFTQ 354 (364)
Q Consensus 317 ~~~~~~~i~~~l~~~~~~l~~~~~~~~~l~~l~~~l~~ 354 (364)
+...+.++++.+.+....++...++++.+|-.+.++|.
T Consensus 316 ~~~~l~~~~~~l~~~~~~~~~~~~~~~~~e~~~~rl~~ 353 (491)
T PRK14964 316 STIFLSRLWQMLLKGIQEVKSSTCVKQAAEMMIIRLCY 353 (491)
T ss_pred CHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHh
Confidence 44566778888899999999999999999999999884
No 14
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=3.4e-43 Score=335.95 Aligned_cols=310 Identities=19% Similarity=0.278 Sum_probs=274.7
Q ss_pred CCChhhccCCCCCcchhccHHHHHHHHHHHhcCCCCc-EEEeCCCCccHHHHHHHHHHHHcCCC----------------
Q 017884 40 ASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPH-LLLYGPPGTGKTSTILAVARKLYGAQ---------------- 102 (364)
Q Consensus 40 ~~~~~~~~~p~~~~~~vg~~~~~~~l~~~~~~~~~~~-lll~G~~G~GKt~la~~l~~~l~~~~---------------- 102 (364)
...|.+||||++|++++||+++++.|++++..++.+| +||+||+|+|||++++.+++.++|..
T Consensus 3 Y~vLarKYRPqtFdEVIGQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I 82 (830)
T PRK07003 3 YQVLARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREI 82 (830)
T ss_pred cHhHHHHhCCCcHHHHcCcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHH
Confidence 4679999999999999999999999999999999999 69999999999999999999998852
Q ss_pred ---CCCcEEEEeCCCCCChHHHHHHHHHHHhcCccccCCccceEEEEEeCCCCCCHHHHHHHHHHHHHhccCccEEEEee
Q 017884 103 ---YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICN 179 (364)
Q Consensus 103 ---~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~ 179 (364)
...++++++..+..+++.+++.+...... +. .++++|+||||+|.|+...++.|+++||+++.+++|||+|+
T Consensus 83 ~~G~h~DviEIDAas~rgVDdIReLIe~a~~~-P~----~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTt 157 (830)
T PRK07003 83 DEGRFVDYVEMDAASNRGVDEMAALLERAVYA-PV----DARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATT 157 (830)
T ss_pred hcCCCceEEEecccccccHHHHHHHHHHHHhc-cc----cCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEEC
Confidence 12368888888778888888877765422 21 12589999999999999999999999999999999999999
Q ss_pred ccccCchhhhccceEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHh-cccCchHHH
Q 017884 180 QVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMA-SQQITEEAV 258 (364)
Q Consensus 180 ~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~a~~~l~~~~~~-~~~i~~~~v 258 (364)
+..++.++|+|||+.+.|.+++.+++.++|.+++.++++.++++++..|++.++|++|.++++++....+ .+.|+.+.|
T Consensus 158 d~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA~~A~GsmRdALsLLdQAia~~~~~It~~~V 237 (830)
T PRK07003 158 DPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQGSMRDALSLTDQAIAYSANEVTETAV 237 (830)
T ss_pred ChhhccchhhhheEEEecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCcCHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999998665544 468999999
Q ss_pred HHhcCCCChHHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc------------------------
Q 017884 259 YLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKI------------------------ 314 (364)
Q Consensus 259 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~~~~------------------------ 314 (364)
..+++......++.+++++..++...++..+.++. ..|.+...++..|..+++++
T Consensus 238 ~~~LG~~d~~~i~~ll~aL~~~d~~~~l~~~~~l~-~~g~~~~~~l~dLl~~l~~~~~~q~~~~~~~~~~~e~~~~~~~a 316 (830)
T PRK07003 238 SGMLGALDQTYMVRLLDALAAGDGPEILAVADEMA-LRSLSFSTALQDLASLLHRIAWAQFAPASVLDEWPEAADLRRFA 316 (830)
T ss_pred HHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCCCHHHHHHHHHHHHHHHHHHHhCccccccccchHHHHHHHH
Confidence 99999999999999999999999999999999998 88888777777776666644
Q ss_pred -CCChHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHH
Q 017884 315 -KMPSDVRVRLMNDLADIEYRLSFGCNDKLQLGSIISTFTQA 355 (364)
Q Consensus 315 -~~~~~~~~~i~~~l~~~~~~l~~~~~~~~~l~~l~~~l~~~ 355 (364)
.++.+.+..+++.+......++...++++.+|-.+.+++..
T Consensus 317 ~~~s~~~l~~~~qi~l~g~~el~~ap~~~~~~Em~llr~l~~ 358 (830)
T PRK07003 317 ELLSPEQVQLFYQIATVGRGELGLAPDEYAGFTMTLLRMLAF 358 (830)
T ss_pred HhCCHHHHHHHHHHHHhHHHHhhcCCCHHHHHHHHHHHHhcC
Confidence 45666677888888888999999999999999999888754
No 15
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=2.2e-43 Score=341.54 Aligned_cols=310 Identities=20% Similarity=0.320 Sum_probs=280.6
Q ss_pred CCChhhccCCCCCcchhccHHHHHHHHHHHhcCCCCc-EEEeCCCCccHHHHHHHHHHHHcCCCC---------------
Q 017884 40 ASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPH-LLLYGPPGTGKTSTILAVARKLYGAQY--------------- 103 (364)
Q Consensus 40 ~~~~~~~~~p~~~~~~vg~~~~~~~l~~~~~~~~~~~-lll~G~~G~GKt~la~~l~~~l~~~~~--------------- 103 (364)
...|++||||.+|++++||+++++.|.+++..++.+| +|||||+|+|||++|+.+++.++|...
T Consensus 3 y~~l~~k~RP~~f~~iiGq~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i 82 (576)
T PRK14965 3 YLVLARKYRPQTFSDLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEI 82 (576)
T ss_pred cHHHHHHhCCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHH
Confidence 3568999999999999999999999999999999999 699999999999999999999988532
Q ss_pred ----CCcEEEEeCCCCCChHHHHHHHHHHHhcCccccCCccceEEEEEeCCCCCCHHHHHHHHHHHHHhccCccEEEEee
Q 017884 104 ----HNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICN 179 (364)
Q Consensus 104 ----~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~ 179 (364)
+.+++++++....+++.+++.+... ...|+ ++ +++|+||||+|.|+...+++|+++||+|+++++|||+|+
T Consensus 83 ~~g~~~d~~eid~~s~~~v~~ir~l~~~~-~~~p~-~~---~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~ 157 (576)
T PRK14965 83 TEGRSVDVFEIDGASNTGVDDIRELRENV-KYLPS-RS---RYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATT 157 (576)
T ss_pred hcCCCCCeeeeeccCccCHHHHHHHHHHH-Hhccc-cC---CceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeC
Confidence 4567888887777888888866554 33343 33 589999999999999999999999999999999999999
Q ss_pred ccccCchhhhccceEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhc-ccCchHHH
Q 017884 180 QVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMAS-QQITEEAV 258 (364)
Q Consensus 180 ~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~a~~~l~~~~~~~-~~i~~~~v 258 (364)
.++++.++|+|||..++|.+++.+++..++..+++++|+.++++++..|+..++||+|.++++++++..+. +.|+.++|
T Consensus 158 ~~~kl~~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~i~~~al~~la~~a~G~lr~al~~Ldqliay~g~~It~edV 237 (576)
T PRK14965 158 EPHKVPITILSRCQRFDFRRIPLQKIVDRLRYIADQEGISISDAALALVARKGDGSMRDSLSTLDQVLAFCGDAVGDDDV 237 (576)
T ss_pred ChhhhhHHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999887765 57999999
Q ss_pred HHhcCCCChHHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc------------------------
Q 017884 259 YLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKI------------------------ 314 (364)
Q Consensus 259 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~~~~------------------------ 314 (364)
..+++......++.+++++..++...++.++.++. ..|.++..++..+.+++|++
T Consensus 238 ~~llG~~~~~~l~~ll~al~~~d~~~al~~l~~l~-~~G~~~~~~l~~Ll~~~RdLl~~k~~~~~~~~l~~~~~~~~~~~ 316 (576)
T PRK14965 238 AELLGVVDRRLLLDISAAVFGRDTRALLEIVERVD-EFGYNMRQFCQELIDHLRNLVVLRAVGEPGDLLDLSEAELAELR 316 (576)
T ss_pred HHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCCCHHHHHHHHHHHHHHHHHHHhcCchhhhccCCHHHHHHHH
Confidence 99999999999999999999999999999999988 89999999999988888765
Q ss_pred ----CCChHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHH
Q 017884 315 ----KMPSDVRVRLMNDLADIEYRLSFGCNDKLQLGSIISTFTQA 355 (364)
Q Consensus 315 ----~~~~~~~~~i~~~l~~~~~~l~~~~~~~~~l~~l~~~l~~~ 355 (364)
.++...+..+++.+.+.++.++.+.++++.+|.++.++|..
T Consensus 317 ~~A~~~s~~~L~~~l~~l~~~~~~lk~~~~~~l~lE~lllkl~~~ 361 (576)
T PRK14965 317 AQAAAADAADLQRHLTLLLRAEGEMAHASFPRLVLEMALLKMATL 361 (576)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhhc
Confidence 34556678889999999999999999999999999999873
No 16
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=3.2e-43 Score=328.10 Aligned_cols=310 Identities=20% Similarity=0.294 Sum_probs=278.3
Q ss_pred CChhhccCCCCCcchhccHHHHHHHHHHHhcCCCCc-EEEeCCCCccHHHHHHHHHHHHcCCC-----------------
Q 017884 41 SPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPH-LLLYGPPGTGKTSTILAVARKLYGAQ----------------- 102 (364)
Q Consensus 41 ~~~~~~~~p~~~~~~vg~~~~~~~l~~~~~~~~~~~-lll~G~~G~GKt~la~~l~~~l~~~~----------------- 102 (364)
..++++|||.+|++++||+.+++.|++++.+++.+| ++|+||+|+|||++|+++++.+.|..
T Consensus 4 ~~l~~k~RP~~~~eiiGq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~ 83 (397)
T PRK14955 4 QVIARKYRPKKFADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGE 83 (397)
T ss_pred HHHHHhcCCCcHhhccChHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCC
Confidence 457899999999999999999999999999999999 89999999999999999999998842
Q ss_pred ----------CCCcEEEEeCCCCCChHHHHHHHHHHHhcCccccCCccceEEEEEeCCCCCCHHHHHHHHHHHHHhccCc
Q 017884 103 ----------YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNT 172 (364)
Q Consensus 103 ----------~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~ 172 (364)
.+.++.++++....+.+.+++...... ..|+ ++ +++++||||+|.++...++.|+++++++++.+
T Consensus 84 c~~c~~~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~-~~p~-~~---~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t 158 (397)
T PRK14955 84 CESCRDFDAGTSLNISEFDAASNNSVDDIRLLRENVR-YGPQ-KG---RYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHA 158 (397)
T ss_pred CHHHHHHhcCCCCCeEeecccccCCHHHHHHHHHHHh-hchh-cC---CeEEEEEeChhhCCHHHHHHHHHHHhcCCCCe
Confidence 123566677666667788887655443 3343 44 48999999999999999999999999999999
Q ss_pred cEEEEeeccccCchhhhccceEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhc--
Q 017884 173 RFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMAS-- 250 (364)
Q Consensus 173 ~~Il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~a~~~l~~~~~~~-- 250 (364)
.+|++++...++.+++++||.+++|.+++.+++..|+..+++++++.+++++++.|+..++||+|.++++++++..+.
T Consensus 159 ~~Il~t~~~~kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~~i~~~al~~l~~~s~g~lr~a~~~L~kl~~~~~~ 238 (397)
T PRK14955 159 IFIFATTELHKIPATIASRCQRFNFKRIPLEEIQQQLQGICEAEGISVDADALQLIGRKAQGSMRDAQSILDQVIAFSVE 238 (397)
T ss_pred EEEEEeCChHHhHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhccc
Confidence 999999888999999999999999999999999999999999999999999999999999999999999999887653
Q ss_pred ----ccCchHHHHHhcCCCChHHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc------------
Q 017884 251 ----QQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKI------------ 314 (364)
Q Consensus 251 ----~~i~~~~v~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~~~~------------ 314 (364)
..||.++|.++++...+.++|++++++..++...++..+.++. ..+.++..++..+.+++|.+
T Consensus 239 ~~~~~~It~~~v~~~v~~~~~~~vf~l~~ai~~~~~~~al~~~~~l~-~~~~~~~~iL~ll~~~~R~ll~~k~~~~~~~~ 317 (397)
T PRK14955 239 SEGEGSIRYDKVAELLNYIDDEHFFAVTDAVADGDAVAMLDVAQFVI-RNGYDEQDFLEKLIEHLRNFLVVHNLRSTRLV 317 (397)
T ss_pred cCCCCccCHHHHHHHHCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 4799999999999999999999999999999999999999998 88999999999999988875
Q ss_pred ---------------CCChHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Q 017884 315 ---------------KMPSDVRVRLMNDLADIEYRLSFGCNDKLQLGSIISTFTQAR 356 (364)
Q Consensus 315 ---------------~~~~~~~~~i~~~l~~~~~~l~~~~~~~~~l~~l~~~l~~~~ 356 (364)
+++...+..+++.+.++++.++++.|+.+.+|.|+.+++...
T Consensus 318 ~~~~~~~~~~~~~a~~~s~~~L~~~l~~l~e~d~~lK~~~~~~l~lE~lll~l~~~~ 374 (397)
T PRK14955 318 ERPDAVRERYERDAAKFSPEVIMQMTDLLLQTQKELKFQFEYQFRFELALLKLIEIG 374 (397)
T ss_pred cCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhhC
Confidence 567778889999999999999999999999999999998643
No 17
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=7.8e-43 Score=336.12 Aligned_cols=308 Identities=22% Similarity=0.391 Sum_probs=280.1
Q ss_pred CChhhccCCCCCcchhccHHHHHHHHHHHhcCCCCc-EEEeCCCCccHHHHHHHHHHHHcCCC-----------------
Q 017884 41 SPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPH-LLLYGPPGTGKTSTILAVARKLYGAQ----------------- 102 (364)
Q Consensus 41 ~~~~~~~~p~~~~~~vg~~~~~~~l~~~~~~~~~~~-lll~G~~G~GKt~la~~l~~~l~~~~----------------- 102 (364)
..|.++|||.+|++++||+++++.|++++..++.+| +||+||+|+|||++|+.+++.++|..
T Consensus 4 ~al~~k~rP~~f~~viGq~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C~~i~ 83 (559)
T PRK05563 4 QALYRKWRPQTFEDVVGQEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICKAIT 83 (559)
T ss_pred HHHHHHhCCCcHHhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHHHHHh
Confidence 568899999999999999999999999999999999 79999999999999999999998864
Q ss_pred --CCCcEEEEeCCCCCChHHHHHHHHHHHhcCccccCCccceEEEEEeCCCCCCHHHHHHHHHHHHHhccCccEEEEeec
Q 017884 103 --YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQ 180 (364)
Q Consensus 103 --~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~ 180 (364)
.+.+++++++....+.+.+++.+.... ..|. .+ +++|+||||+|.|+...+++|++++++||.+++||++|+.
T Consensus 84 ~g~~~dv~eidaas~~~vd~ir~i~~~v~-~~p~-~~---~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~ 158 (559)
T PRK05563 84 NGSLMDVIEIDAASNNGVDEIRDIRDKVK-YAPS-EA---KYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTE 158 (559)
T ss_pred cCCCCCeEEeeccccCCHHHHHHHHHHHh-hCcc-cC---CeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCC
Confidence 246788888887788888888665543 3333 23 5999999999999999999999999999999999999999
Q ss_pred cccCchhhhccceEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHh-cccCchHHHH
Q 017884 181 VNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMA-SQQITEEAVY 259 (364)
Q Consensus 181 ~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~a~~~l~~~~~~-~~~i~~~~v~ 259 (364)
+++++++++|||+.+.|.+++.+++..|+..+++++|+.+++++++.++..++|++|.+++.|+++..+ .+.||.++|.
T Consensus 159 ~~ki~~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~i~~~al~~ia~~s~G~~R~al~~Ldq~~~~~~~~It~~~V~ 238 (559)
T PRK05563 159 PHKIPATILSRCQRFDFKRISVEDIVERLKYILDKEGIEYEDEALRLIARAAEGGMRDALSILDQAISFGDGKVTYEDAL 238 (559)
T ss_pred hhhCcHHHHhHheEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCCCHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999887665 3579999999
Q ss_pred HhcCCCChHHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc-------------------------
Q 017884 260 LCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKI------------------------- 314 (364)
Q Consensus 260 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~~~~------------------------- 314 (364)
.+++......++++++++..++...++..+.++. ..|.++..++..+..++|++
T Consensus 239 ~vlg~~~~~~i~~l~~al~~~d~~~al~~l~~l~-~~g~d~~~~l~~L~~~~Rdll~~k~~~~~~~~~~~~~~~~~~~~~ 317 (559)
T PRK05563 239 EVTGSVSQEALDDLVDAIVEGDVAKALKILEELL-DEGKDPNRFIEDLIYYLRDLLLVKTSPELEILDESTENDELFKEL 317 (559)
T ss_pred HHhCCCCHHHHHHHHHHHHccCHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHhhcCcccccccCHHHHHHHHHH
Confidence 9999999999999999999999999999999998 89999999999888887765
Q ss_pred --CCChHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHH
Q 017884 315 --KMPSDVRVRLMNDLADIEYRLSFGCNDKLQLGSIISTFTQ 354 (364)
Q Consensus 315 --~~~~~~~~~i~~~l~~~~~~l~~~~~~~~~l~~l~~~l~~ 354 (364)
.++...+.++++.+.+++.+++.+.++++.+|.++.++|.
T Consensus 318 a~~~s~~~L~~~i~~L~~~~~~lk~~~~~~l~lE~lllkl~~ 359 (559)
T PRK05563 318 SEKLDIERLYRMIDILNDAQQQIKWTNQPRIYLEVALVKLCE 359 (559)
T ss_pred HHhCCHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHh
Confidence 2456678899999999999999999999999999999998
No 18
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=1e-42 Score=321.27 Aligned_cols=310 Identities=22% Similarity=0.291 Sum_probs=274.6
Q ss_pred CCChhhccCCCCCcchhccHHHHHHHHHHHhcCCCCc-EEEeCCCCccHHHHHHHHHHHHcCCC----------------
Q 017884 40 ASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPH-LLLYGPPGTGKTSTILAVARKLYGAQ---------------- 102 (364)
Q Consensus 40 ~~~~~~~~~p~~~~~~vg~~~~~~~l~~~~~~~~~~~-lll~G~~G~GKt~la~~l~~~l~~~~---------------- 102 (364)
..+|++||||.+|++++||+++++.|++.+..++.+| ++|+||+|+|||++|+++++.+.|..
T Consensus 3 ~~~l~~kyrP~~~~~iiGq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~ 82 (363)
T PRK14961 3 YQILARKWRPQYFRDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEI 82 (363)
T ss_pred cHHHHHHhCCCchhhccChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHH
Confidence 4689999999999999999999999999999999999 69999999999999999999998742
Q ss_pred ---CCCcEEEEeCCCCCChHHHHHHHHHHHhcCccccCCccceEEEEEeCCCCCCHHHHHHHHHHHHHhccCccEEEEee
Q 017884 103 ---YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICN 179 (364)
Q Consensus 103 ---~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~ 179 (364)
...++.++++....+.+.+++.+.... ..|. .+ +++|+||||+|.++...+++|++++++++.++.+|++|+
T Consensus 83 ~~~~~~d~~~~~~~~~~~v~~ir~i~~~~~-~~p~-~~---~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~ 157 (363)
T PRK14961 83 EKGLCLDLIEIDAASRTKVEEMREILDNIY-YSPS-KS---RFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATT 157 (363)
T ss_pred hcCCCCceEEecccccCCHHHHHHHHHHHh-cCcc-cC---CceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcC
Confidence 123566666655456777776655433 3332 22 588999999999999999999999999999999999999
Q ss_pred ccccCchhhhccceEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhc-ccCchHHH
Q 017884 180 QVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMAS-QQITEEAV 258 (364)
Q Consensus 180 ~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~a~~~l~~~~~~~-~~i~~~~v 258 (364)
..+++.++++|||..++|+|++.+++.+|+..+++++|+.+++++++.++..++||+|.+++.++.+..+. +.|+.++|
T Consensus 158 ~~~~l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~~i~~~al~~ia~~s~G~~R~al~~l~~~~~~~~~~It~~~v 237 (363)
T PRK14961 158 DVEKIPKTILSRCLQFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAYHAHGSMRDALNLLEHAINLGKGNINIKNV 237 (363)
T ss_pred ChHhhhHHHHhhceEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCCHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999998876544 68999999
Q ss_pred HHhcCCCChHHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc------------------------
Q 017884 259 YLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKI------------------------ 314 (364)
Q Consensus 259 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~~~~------------------------ 314 (364)
.++++...+..++++++++..++...++..+.++. ..|.++..++..+..+++++
T Consensus 238 ~~~l~~~~~~~i~~l~~ai~~~~~~~~~~~~~~l~-~~g~~~~~il~~l~~~~~d~l~~~~~~~~~~~~~~~~~~~~~~~ 316 (363)
T PRK14961 238 TDMLGLLNEKQSFLLTDALLKKDSKKTMLLLNKIS-SIGIEWENILIEMLRFLHHISMSQSFPKIWNTIFIKNYKNQIQK 316 (363)
T ss_pred HHHHCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHhcCchhhcccchHHHHHHHH
Confidence 99999999999999999999999999999999998 88999999999998888865
Q ss_pred ---CCChHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHH
Q 017884 315 ---KMPSDVRVRLMNDLADIEYRLSFGCNDKLQLGSIISTFTQA 355 (364)
Q Consensus 315 ---~~~~~~~~~i~~~l~~~~~~l~~~~~~~~~l~~l~~~l~~~ 355 (364)
.++...+..+++.+.+...+++.+.|+++.+|-++.+++.+
T Consensus 317 ~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~e~~l~~~~~~ 360 (363)
T PRK14961 317 IAQNNKKTNIQLCYQILLNGRKELKFAPDQKIGVEMTLLRAINA 360 (363)
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHHccCCCchHHHHHHHHHHHhC
Confidence 34555667788999999999999999999999999999865
No 19
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=7e-43 Score=336.47 Aligned_cols=311 Identities=19% Similarity=0.284 Sum_probs=280.4
Q ss_pred CChhhccCCCCCcchhccHHHHHHHHHHHhcCCCCc-EEEeCCCCccHHHHHHHHHHHHcCCC-----------------
Q 017884 41 SPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPH-LLLYGPPGTGKTSTILAVARKLYGAQ----------------- 102 (364)
Q Consensus 41 ~~~~~~~~p~~~~~~vg~~~~~~~l~~~~~~~~~~~-lll~G~~G~GKt~la~~l~~~l~~~~----------------- 102 (364)
..+.+||||.+|++++||+.+++.|++++.+++.+| +||+||+|+|||++|+.+++.++|..
T Consensus 4 ~~l~~kyRP~~f~eivGQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~ 83 (620)
T PRK14954 4 QVIARKYRPSKFADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGE 83 (620)
T ss_pred HHHHHHHCCCCHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCcc
Confidence 457899999999999999999999999999999999 89999999999999999999999843
Q ss_pred ----------CCCcEEEEeCCCCCChHHHHHHHHHHHhcCccccCCccceEEEEEeCCCCCCHHHHHHHHHHHHHhccCc
Q 017884 103 ----------YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNT 172 (364)
Q Consensus 103 ----------~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~ 172 (364)
.+.++.++++....+++.+++.+..+.. .|+ ++ +++|+||||+|.|+...++.|+++|++|+.++
T Consensus 84 C~sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~-~P~-~~---~~KVvIIdEad~Lt~~a~naLLK~LEePp~~t 158 (620)
T PRK14954 84 CESCRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRY-GPQ-KG---RYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHA 158 (620)
T ss_pred CHHHHHHhccCCCCeEEecccccCCHHHHHHHHHHHHh-hhh-cC---CCEEEEEeChhhcCHHHHHHHHHHHhCCCCCe
Confidence 1245667776666678888887665543 233 44 48999999999999999999999999999999
Q ss_pred cEEEEeeccccCchhhhccceEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhc--
Q 017884 173 RFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMAS-- 250 (364)
Q Consensus 173 ~~Il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~a~~~l~~~~~~~-- 250 (364)
+||++++...++.++|++||++++|.+++.+++..|+..+++++|+.+++++++.|+..++||+|.++++++++..+.
T Consensus 159 v~IL~t~~~~kLl~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi~I~~eal~~La~~s~Gdlr~al~eLeKL~~y~~~ 238 (620)
T PRK14954 159 IFIFATTELHKIPATIASRCQRFNFKRIPLDEIQSQLQMICRAEGIQIDADALQLIARKAQGSMRDAQSILDQVIAFSVG 238 (620)
T ss_pred EEEEEeCChhhhhHHHHhhceEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHHHhccc
Confidence 999999888999999999999999999999999999999999999999999999999999999999999999988774
Q ss_pred ----ccCchHHHHHhcCCCChHHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc------------
Q 017884 251 ----QQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKI------------ 314 (364)
Q Consensus 251 ----~~i~~~~v~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~~~~------------ 314 (364)
+.||.++|.++++...+.++|++++++..++...++..+.++. ..|..+..++..+.+++|.+
T Consensus 239 ~~~~~~It~~~V~~lv~~~~e~~iF~L~dai~~~d~~~al~~l~~Ll-~~ge~p~~iL~lL~~~fRdLL~vK~~~~~~l~ 317 (620)
T PRK14954 239 SEAEKVIAYQGVAELLNYIDDEQFFDVTDAIAENDAVKMLEVARFVI-DNGYDEQDFLEKLIEHFRNFLVLYNLRSTRLI 317 (620)
T ss_pred cccCCccCHHHHHHHHcCCCHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCCCHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 4799999999999999999999999999999999999999998 89999999999999998866
Q ss_pred ---------------CCChHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH
Q 017884 315 ---------------KMPSDVRVRLMNDLADIEYRLSFGCNDKLQLGSIISTFTQARS 357 (364)
Q Consensus 315 ---------------~~~~~~~~~i~~~l~~~~~~l~~~~~~~~~l~~l~~~l~~~~~ 357 (364)
+++...+..+++.+.++++.++++.+.++.+|.++.+++....
T Consensus 318 ~~~~~v~~~l~~qA~~fs~~~L~~~l~~l~e~d~~LKtn~n~~l~lEllLlkl~~~~~ 375 (620)
T PRK14954 318 ERPESVKERYQQSAGGLTPAAVMQMTDFLMKTQGELKFQFEYQFRFELALLRLIELVR 375 (620)
T ss_pred cCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhccC
Confidence 4556677888999999999999988999999999999998553
No 20
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=1e-42 Score=338.72 Aligned_cols=310 Identities=19% Similarity=0.276 Sum_probs=274.9
Q ss_pred CCChhhccCCCCCcchhccHHHHHHHHHHHhcCCCCc-EEEeCCCCccHHHHHHHHHHHHcCCCC---------------
Q 017884 40 ASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPH-LLLYGPPGTGKTSTILAVARKLYGAQY--------------- 103 (364)
Q Consensus 40 ~~~~~~~~~p~~~~~~vg~~~~~~~l~~~~~~~~~~~-lll~G~~G~GKt~la~~l~~~l~~~~~--------------- 103 (364)
..+|.+||||.+|++++||++++..|++++..++.+| +||+||+|+|||++|+.+++.++|...
T Consensus 3 Y~~LaeKyRP~tFddIIGQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i 82 (944)
T PRK14949 3 YQVLARKWRPATFEQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEI 82 (944)
T ss_pred chhHHHHhCCCCHHHhcCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHH
Confidence 4689999999999999999999999999999999999 599999999999999999999998521
Q ss_pred ----CCcEEEEeCCCCCChHHHHHHHHHHHhcCccccCCccceEEEEEeCCCCCCHHHHHHHHHHHHHhccCccEEEEee
Q 017884 104 ----HNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICN 179 (364)
Q Consensus 104 ----~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~ 179 (364)
...++++++....+++.+++.+..+... +. .++++|+||||+|.|+...+++|+++||+|+.+++||++|+
T Consensus 83 ~~g~~~DviEidAas~~kVDdIReLie~v~~~-P~----~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTT 157 (944)
T PRK14949 83 AQGRFVDLIEVDAASRTKVDDTRELLDNVQYR-PS----RGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATT 157 (944)
T ss_pred hcCCCceEEEeccccccCHHHHHHHHHHHHhh-hh----cCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECC
Confidence 2345777776667888888877665332 21 12689999999999999999999999999999999999999
Q ss_pred ccccCchhhhccceEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHh-cccCchHHH
Q 017884 180 QVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMA-SQQITEEAV 258 (364)
Q Consensus 180 ~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~a~~~l~~~~~~-~~~i~~~~v 258 (364)
...++.++|+|||.+++|.+++.+++..+|..++..+++.++++++..|+..++|++|.++++++.+..+ .+.++.+.|
T Consensus 158 e~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~EgI~~edeAL~lIA~~S~Gd~R~ALnLLdQala~~~~~It~~~V 237 (944)
T PRK14949 158 DPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLAKAANGSMRDALSLTDQAIAFGGGQVMLTQV 237 (944)
T ss_pred CchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCcccHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999765443 368999999
Q ss_pred HHhcCCCChHHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc------------------------
Q 017884 259 YLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKI------------------------ 314 (364)
Q Consensus 259 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~~~~------------------------ 314 (364)
..+++......+..+++++.+++...++.++.+++ ..|.++..++..|..++|.+
T Consensus 238 ~~llG~iD~~~V~~llksI~~~D~~aaL~~l~~Ll-~~G~D~~~ILr~Ll~~lRDill~k~~~~~~~l~i~~e~i~~~a~ 316 (944)
T PRK14949 238 QTMLGSIDEQHVIALLKALTDADIGVLMQTCAQVL-AFGADAQEVLRSLLELLHQITLTQFAPAAAQQSLYSEQIRAFAE 316 (944)
T ss_pred HHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHhccchhhccchHHHHHHHHH
Confidence 99999888888999999999999999999999998 99999999999988888755
Q ss_pred CCChHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHH
Q 017884 315 KMPSDVRVRLMNDLADIEYRLSFGCNDKLQLGSIISTFTQA 355 (364)
Q Consensus 315 ~~~~~~~~~i~~~l~~~~~~l~~~~~~~~~l~~l~~~l~~~ 355 (364)
.++...+..+++.+.+...+++...++++.||.++.+++..
T Consensus 317 ~~s~~~L~~~ie~l~~a~~~L~~n~n~rl~lE~~LLrl~~~ 357 (944)
T PRK14949 317 QLSPEQVQLYYQILLTGRKDLPHAPDPKSGLEMALLRAVAF 357 (944)
T ss_pred hCCHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHc
Confidence 23444567788999999999999999999999999999753
No 21
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=100.00 E-value=3.2e-42 Score=317.70 Aligned_cols=307 Identities=34% Similarity=0.568 Sum_probs=269.5
Q ss_pred CChhhccCCCCCcchhccHHHHHHHHHHHhcCCCCcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCCC----
Q 017884 41 SPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDR---- 116 (364)
Q Consensus 41 ~~~~~~~~p~~~~~~vg~~~~~~~l~~~~~~~~~~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~---- 116 (364)
.+|++||||.+|++++|++.++..|..++..+..||++|+||+|+|||++|+++++.+.+.++...++.+++.+..
T Consensus 3 ~~w~~ky~P~~~~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~~~~~~ 82 (337)
T PRK12402 3 PLWTEKYRPALLEDILGQDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADFFDQGK 82 (337)
T ss_pred CchHHhhCCCcHHHhcCCHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhhhhcch
Confidence 4899999999999999999999999999999988899999999999999999999999876644555666654310
Q ss_pred ----------------------ChHHHHHHHHHHHhcCccccCCccceEEEEEeCCCCCCHHHHHHHHHHHHHhccCccE
Q 017884 117 ----------------------GIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRF 174 (364)
Q Consensus 117 ----------------------~~~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~ 174 (364)
..+.++..+.......++ ++ ++++|+|||++.++...++.|+++++.++.++++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~ 158 (337)
T PRK12402 83 KYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPL-SA---DYKTILLDNAEALREDAQQALRRIMEQYSRTCRF 158 (337)
T ss_pred hhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCC-CC---CCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeE
Confidence 122333334444444443 23 4789999999999999999999999999888999
Q ss_pred EEEeeccccCchhhhccceEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCc
Q 017884 175 ALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQIT 254 (364)
Q Consensus 175 Il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~a~~~l~~~~~~~~~i~ 254 (364)
|++++.+.++.+++++||..+.|.|++.+++..++..++.++++.+++++++.|+..++||+|.+++.++..+...+.||
T Consensus 159 Il~~~~~~~~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~al~~l~~~~~gdlr~l~~~l~~~~~~~~~It 238 (337)
T PRK12402 159 IIATRQPSKLIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVDYDDDGLELIAYYAGGDLRKAILTLQTAALAAGEIT 238 (337)
T ss_pred EEEeCChhhCchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCC
Confidence 99998888899999999999999999999999999999999999999999999999999999999999998876667899
Q ss_pred hHHHHHhcCC-CChHHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Q 017884 255 EEAVYLCTGN-PLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEY 333 (364)
Q Consensus 255 ~~~v~~~~~~-~~~~~~~~l~~~l~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~i~~~l~~~~~ 333 (364)
.++|.+++.. ..+.+++++++++.+++...++..+.+++...|.++..++..+...... +++...+.++++.+.++|+
T Consensus 239 ~~~v~~~~~~~~~~~~i~~l~~ai~~~~~~~a~~~l~~l~~~~g~~~~~i~~~l~~~~~~-~~~~~~l~~~~~~l~~~d~ 317 (337)
T PRK12402 239 MEAAYEALGDVGTDEVIESLLDAAEAGDFTDARKTLDDLLIDEGLSGGEVLEELLRVARS-RYRGDNLARLHRLAADADA 317 (337)
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHH
Confidence 9999999887 5588999999999999999999999998767899999999998877665 4899999999999999999
Q ss_pred HHhcCCChHHHHHHHHHHH
Q 017884 334 RLSFGCNDKLQLGSIISTF 352 (364)
Q Consensus 334 ~l~~~~~~~~~l~~l~~~l 352 (364)
++++|.++.++|+.++.++
T Consensus 318 ~lk~g~~~~~~le~~i~~~ 336 (337)
T PRK12402 318 RLTDGANDRIQLEALLAEL 336 (337)
T ss_pred HHHcCCCHHHHHHHHHHhh
Confidence 9999999999999999876
No 22
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=1.9e-42 Score=327.86 Aligned_cols=310 Identities=15% Similarity=0.232 Sum_probs=275.6
Q ss_pred CCChhhccCCCCCcchhccHHHHHHHHHHHhcCCCCc-EEEeCCCCccHHHHHHHHHHHHcCCC----------------
Q 017884 40 ASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPH-LLLYGPPGTGKTSTILAVARKLYGAQ---------------- 102 (364)
Q Consensus 40 ~~~~~~~~~p~~~~~~vg~~~~~~~l~~~~~~~~~~~-lll~G~~G~GKt~la~~l~~~l~~~~---------------- 102 (364)
..+|++||||.+|++++||+++++.|.+++..++.+| +||+||+|+|||++|+++++.++|..
T Consensus 2 Y~~LarKyRPktFddVIGQe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I 81 (702)
T PRK14960 2 YQVLARKYRPRNFNELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAV 81 (702)
T ss_pred chhHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHH
Confidence 4689999999999999999999999999999999998 69999999999999999999998842
Q ss_pred ---CCCcEEEEeCCCCCChHHHHHHHHHHHhcCccccCCccceEEEEEeCCCCCCHHHHHHHHHHHHHhccCccEEEEee
Q 017884 103 ---YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICN 179 (364)
Q Consensus 103 ---~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~ 179 (364)
...++++++++...+++.+++.+...... +. . ++++|+||||+|.|+...+++|+++|++++.++.||++|+
T Consensus 82 ~~g~hpDviEIDAAs~~~VddIReli~~~~y~-P~-~---gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTt 156 (702)
T PRK14960 82 NEGRFIDLIEIDAASRTKVEDTRELLDNVPYA-PT-Q---GRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATT 156 (702)
T ss_pred hcCCCCceEEecccccCCHHHHHHHHHHHhhh-hh-c---CCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEEC
Confidence 23468888888777888888877654332 21 1 2589999999999999999999999999999999999999
Q ss_pred ccccCchhhhccceEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHh-cccCchHHH
Q 017884 180 QVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMA-SQQITEEAV 258 (364)
Q Consensus 180 ~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~a~~~l~~~~~~-~~~i~~~~v 258 (364)
.+.++..+++|||.++.|.+++.+++.+++..++.++|+.++++++..|++.++||+|.++++++++..+ .+.|+.++|
T Consensus 157 d~~kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI~id~eAL~~IA~~S~GdLRdALnLLDQaIayg~g~IT~edV 236 (702)
T PRK14960 157 DPQKLPITVISRCLQFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAESAQGSLRDALSLTDQAIAYGQGAVHHQDV 236 (702)
T ss_pred ChHhhhHHHHHhhheeeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCcCHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999776654 368999999
Q ss_pred HHhcCCCChHHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc------------------------
Q 017884 259 YLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKI------------------------ 314 (364)
Q Consensus 259 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~~~~------------------------ 314 (364)
..+++......++++++++.+++...++..+.++. ..|.++..++..+...++++
T Consensus 237 ~~lLG~~d~e~IfdLldAI~k~d~~~al~~L~el~-~~g~d~~~~l~~Ll~~lrdlll~~~~~~~~~~~~~~~~~~~~~l 315 (702)
T PRK14960 237 KEMLGLIDRTIIYDLILAVHQNQREKVSQLLLQFR-YQALDVSLVLDQLISTLHELALLQYLPELGLKYSEEINAKILQL 315 (702)
T ss_pred HHHhccCCHHHHHHHHHHHHhcCHHHHHHHHHHHH-HhCCCHHHHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHH
Confidence 99999999999999999999999999999999998 88999888887777766653
Q ss_pred --CCChHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHH
Q 017884 315 --KMPSDVRVRLMNDLADIEYRLSFGCNDKLQLGSIISTFTQA 355 (364)
Q Consensus 315 --~~~~~~~~~i~~~l~~~~~~l~~~~~~~~~l~~l~~~l~~~ 355 (364)
.++...+..++..+.+....++...++++.+|-++.+++..
T Consensus 316 a~~~s~~~l~~~~qi~l~~~~~l~~s~~~r~~lEm~llrl~~~ 358 (702)
T PRK14960 316 SKLISAQDLQLYYQIACKGRSDLQLAVTQEQGFEMCVLRLLAF 358 (702)
T ss_pred HHcCCHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhC
Confidence 34555667888888888899999999999999999999865
No 23
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=3.2e-42 Score=326.70 Aligned_cols=305 Identities=24% Similarity=0.339 Sum_probs=274.9
Q ss_pred hhhccCCCCCcchhccHHHHHHHHHHHhcCCCCc-EEEeCCCCccHHHHHHHHHHHHcCCC------------------C
Q 017884 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPH-LLLYGPPGTGKTSTILAVARKLYGAQ------------------Y 103 (364)
Q Consensus 43 ~~~~~~p~~~~~~vg~~~~~~~l~~~~~~~~~~~-lll~G~~G~GKt~la~~l~~~l~~~~------------------~ 103 (364)
+.+||||.+|++++||++++..|..++..++.+| ++|+||||+|||++|+++++.+.|.+ .
T Consensus 4 l~~KyRP~~~~dvvGq~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~ 83 (504)
T PRK14963 4 LYQRARPITFDEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGA 83 (504)
T ss_pred HHHhhCCCCHHHhcChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCC
Confidence 3499999999999999999999999999999999 59999999999999999999998742 3
Q ss_pred CCcEEEEeCCCCCChHHHHHHHHHHHhcCccccCCccceEEEEEeCCCCCCHHHHHHHHHHHHHhccCccEEEEeecccc
Q 017884 104 HNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNK 183 (364)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~ 183 (364)
+.+++++++....+.+.+++.. .+....++ ++ ++++|||||+|.++...++.|++++++++.++.+|++++.+.+
T Consensus 84 h~dv~el~~~~~~~vd~iR~l~-~~~~~~p~-~~---~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~k 158 (504)
T PRK14963 84 HPDVLEIDAASNNSVEDVRDLR-EKVLLAPL-RG---GRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEK 158 (504)
T ss_pred CCceEEecccccCCHHHHHHHH-HHHhhccc-cC---CCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhh
Confidence 4568888887777888888754 44444443 33 5899999999999999999999999999999999999999999
Q ss_pred CchhhhccceEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCchHHHHHhcC
Q 017884 184 IIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTG 263 (364)
Q Consensus 184 l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~a~~~l~~~~~~~~~i~~~~v~~~~~ 263 (364)
+.+++++||..++|.+++.+++..|+..+++++|+.+++++++.|++.++||+|.++++|+++..+.+.||.++|..+++
T Consensus 159 l~~~I~SRc~~~~f~~ls~~el~~~L~~i~~~egi~i~~~Al~~ia~~s~GdlR~aln~Lekl~~~~~~It~~~V~~~l~ 238 (504)
T PRK14963 159 MPPTILSRTQHFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVARLADGAMRDAESLLERLLALGTPVTRKQVEEALG 238 (504)
T ss_pred CChHHhcceEEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHC
Confidence 99999999999999999999999999999999999999999999999999999999999999887767899999999999
Q ss_pred CCChHHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH-------------hcCCChHHHHHHHHHHHH
Q 017884 264 NPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVF-------------KIKMPSDVRVRLMNDLAD 330 (364)
Q Consensus 264 ~~~~~~~~~l~~~l~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~~-------------~~~~~~~~~~~i~~~l~~ 330 (364)
.....+++++++++..++...++..+.+++ ..|+++..|+..+.++++ ...+++..+..++..+.+
T Consensus 239 ~~~~~~if~Li~al~~~d~~~Al~~l~~Ll-~~G~~~~~Il~~L~~~~r~ll~~k~~~~~~~~~~~~~~~~~~~l~~l~~ 317 (504)
T PRK14963 239 LPPQERLRGIAAALAQGDAAEALSGAAQLY-RDGFAARTLVEGLLEAFRAALYAELGLGGGPRLEGAEPRLLAAMTALDE 317 (504)
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHhccCcccccccCcHHHHHHHHHHHH
Confidence 999999999999999999999999999998 789999999999999999 335577788999999999
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHH
Q 017884 331 IEYRLSFGCNDKLQLGSIISTFTQ 354 (364)
Q Consensus 331 ~~~~l~~~~~~~~~l~~l~~~l~~ 354 (364)
.++++..+.+ +..|+-.+.++|.
T Consensus 318 ~~~~~~~~~~-~~~l~~~l~~~~~ 340 (504)
T PRK14963 318 QMERFARRSD-ALSLELALLHALL 340 (504)
T ss_pred HHHHHHhccc-hhHHHHHHHHHHh
Confidence 9999988875 6678888888874
No 24
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=1.3e-42 Score=328.22 Aligned_cols=310 Identities=20% Similarity=0.294 Sum_probs=275.4
Q ss_pred CCChhhccCCCCCcchhccHHHHHHHHHHHhcCCCCc-EEEeCCCCccHHHHHHHHHHHHcCCC----------------
Q 017884 40 ASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPH-LLLYGPPGTGKTSTILAVARKLYGAQ---------------- 102 (364)
Q Consensus 40 ~~~~~~~~~p~~~~~~vg~~~~~~~l~~~~~~~~~~~-lll~G~~G~GKt~la~~l~~~l~~~~---------------- 102 (364)
..+|.+||||.+|++++||+++++.|.+++..++.+| +||+||+|+|||++++.+++.++|.+
T Consensus 3 y~vLarKYRPqtFddVIGQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~ 82 (700)
T PRK12323 3 YQVLARKWRPRDFTTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCR 82 (700)
T ss_pred chhHHHHhCCCcHHHHcCcHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccH
Confidence 5689999999999999999999999999999999999 69999999999999999999999832
Q ss_pred --------CCCcEEEEeCCCCCChHHHHHHHHHHHhcCccccCCccceEEEEEeCCCCCCHHHHHHHHHHHHHhccCccE
Q 017884 103 --------YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRF 174 (364)
Q Consensus 103 --------~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~ 174 (364)
.+.++++++.....+++.+++.+...... +. .++++|+||||+|.|+...+|.|+++||+++.++.|
T Consensus 83 sC~~I~aG~hpDviEIdAas~~gVDdIReLie~~~~~-P~----~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~F 157 (700)
T PRK12323 83 ACTEIDAGRFVDYIEMDAASNRGVDEMAQLLDKAVYA-PT----AGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKF 157 (700)
T ss_pred HHHHHHcCCCCcceEecccccCCHHHHHHHHHHHHhc-hh----cCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceE
Confidence 12367888888778899999877765433 21 225899999999999999999999999999999999
Q ss_pred EEEeeccccCchhhhccceEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHh-cccC
Q 017884 175 ALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMA-SQQI 253 (364)
Q Consensus 175 Il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~a~~~l~~~~~~-~~~i 253 (364)
|++|++++++.++|+|||+.+.|.+++.+++.+++..++.++++.++++++..|++.++|++|.++++++....+ .+.|
T Consensus 158 ILaTtep~kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~~d~eAL~~IA~~A~Gs~RdALsLLdQaia~~~~~I 237 (700)
T PRK12323 158 ILATTDPQKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRLLAQAAQGSMRDALSLTDQAIAYSAGNV 237 (700)
T ss_pred EEEeCChHhhhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999765443 3689
Q ss_pred chHHHHHhcCCCChHHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc-------------------
Q 017884 254 TEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKI------------------- 314 (364)
Q Consensus 254 ~~~~v~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~~~~------------------- 314 (364)
+.+.|..+++......++.+++.+..++....+..+..+. ..|.+...++..|..+++++
T Consensus 238 t~~~V~~~LG~~d~~~i~~Ll~aL~~~d~~~~l~l~~~l~-~~G~d~~~~L~dLl~~l~~l~l~q~~~~~~~~~~~~~~~ 316 (700)
T PRK12323 238 SEEAVRGMLGAIDQSYLVRLLDALAAEDGAALLAIADEMA-GRSLSFAGALQDLASLLQKIALAQVVPAAVQDDWPEADD 316 (700)
T ss_pred CHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHhhCchhcccccchHHH
Confidence 9999999999999999999999999999999999999887 88999877777777666554
Q ss_pred ------CCChHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHH
Q 017884 315 ------KMPSDVRVRLMNDLADIEYRLSFGCNDKLQLGSIISTFTQA 355 (364)
Q Consensus 315 ------~~~~~~~~~i~~~l~~~~~~l~~~~~~~~~l~~l~~~l~~~ 355 (364)
.++.+.+..+++.+.+....++...++++.+|-.+.+++..
T Consensus 317 ~~~~a~~~s~~~l~~~~q~~~~~~~el~~a~~~~~~~Em~llrll~~ 363 (700)
T PRK12323 317 IRRLAGRFDAQEVQLFYQIANLGRSELALAPDEYAGFTMTLLRMLAF 363 (700)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhC
Confidence 24556677888888999999999999999999999988754
No 25
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=1.8e-42 Score=343.12 Aligned_cols=308 Identities=20% Similarity=0.285 Sum_probs=274.2
Q ss_pred CChhhccCCCCCcchhccHHHHHHHHHHHhcCCCCc-EEEeCCCCccHHHHHHHHHHHHcCCC-----------------
Q 017884 41 SPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPH-LLLYGPPGTGKTSTILAVARKLYGAQ----------------- 102 (364)
Q Consensus 41 ~~~~~~~~p~~~~~~vg~~~~~~~l~~~~~~~~~~~-lll~G~~G~GKt~la~~l~~~l~~~~----------------- 102 (364)
..|.+||||.+|++|+||+++++.|++++..++.+| +||+||+|+|||++|+.|++.++|..
T Consensus 3 ~~l~~KyRP~~f~eiiGqe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~ 82 (824)
T PRK07764 3 LALYRRYRPATFAEVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALA 82 (824)
T ss_pred hhHHHHhCCCCHHHhcCcHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHH
Confidence 458899999999999999999999999999999999 89999999999999999999999842
Q ss_pred ----CCCcEEEEeCCCCCChHHHHHHHHHHHhcCccccCCccceEEEEEeCCCCCCHHHHHHHHHHHHHhccCccEEEEe
Q 017884 103 ----YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALIC 178 (364)
Q Consensus 103 ----~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~ 178 (364)
.+.+++++++....+++.+++.+..... .+ .. .+++|+||||+|.|+...++.|+++||+++.+++|||++
T Consensus 83 ~g~~~~~dv~eidaas~~~Vd~iR~l~~~~~~-~p--~~--~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~t 157 (824)
T PRK07764 83 PGGPGSLDVTEIDAASHGGVDDARELRERAFF-AP--AE--SRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFAT 157 (824)
T ss_pred cCCCCCCcEEEecccccCCHHHHHHHHHHHHh-ch--hc--CCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEe
Confidence 2356778888777788999886554332 22 11 268999999999999999999999999999999999999
Q ss_pred eccccCchhhhccceEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhc--ccCchH
Q 017884 179 NQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMAS--QQITEE 256 (364)
Q Consensus 179 ~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~a~~~l~~~~~~~--~~i~~~ 256 (364)
+..+++.++|+|||+++.|.+++.+++.+||.++++++|+.++++++..|+..++||+|.++++|+++..+. +.||.+
T Consensus 158 t~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv~id~eal~lLa~~sgGdlR~Al~eLEKLia~~~~~~IT~e 237 (824)
T PRK07764 158 TEPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGVPVEPGVLPLVIRAGGGSVRDSLSVLDQLLAGAGPEGVTYE 237 (824)
T ss_pred CChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhhcCCCCCCHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999988653 579999
Q ss_pred HHHHhcCCCChHHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc----------------------
Q 017884 257 AVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKI---------------------- 314 (364)
Q Consensus 257 ~v~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~~~~---------------------- 314 (364)
++..+++......++++++++..++...++.++.+++ ..|.++..++..|.++|+++
T Consensus 238 ~V~allg~~~~~~I~~lidAL~~~D~a~al~~l~~Li-~~G~dp~~~L~~LL~~fRDLL~vka~~~~~~~~l~~~p~d~~ 316 (824)
T PRK07764 238 RAVALLGVTDSALIDEAVDALAAGDGAALFGTVDRVI-EAGHDPRRFAEDLLERLRDLIVLQAVPDAAERGLVDAPADQL 316 (824)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHcCCHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHhcCcchhhhhccCCHHHH
Confidence 9999999999999999999999999999999999988 88999998888888888765
Q ss_pred --------CCChHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHH
Q 017884 315 --------KMPSDVRVRLMNDLADIEYRLSFGCNDKLQLGSIISTFTQ 354 (364)
Q Consensus 315 --------~~~~~~~~~i~~~l~~~~~~l~~~~~~~~~l~~l~~~l~~ 354 (364)
+++...+.++++.+.++...++.+.+.++.+|.|+.+++.
T Consensus 317 ~~L~~qA~~~s~~~L~r~ie~l~ea~~~lrgn~nprL~LElLllrLll 364 (824)
T PRK07764 317 DRMRAQAQRLGPAELTRAADVVNDGLTEMRGATSPRLLLELLCARMLL 364 (824)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHh
Confidence 3444566778899999977777778999999999999974
No 26
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=2e-42 Score=334.09 Aligned_cols=316 Identities=24% Similarity=0.372 Sum_probs=278.5
Q ss_pred CCCChhhccCCCCCcchhccHHHHHHHHHHHhcCCCCc-EEEeCCCCccHHHHHHHHHHHHcCCCC--------------
Q 017884 39 KASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPH-LLLYGPPGTGKTSTILAVARKLYGAQY-------------- 103 (364)
Q Consensus 39 ~~~~~~~~~~p~~~~~~vg~~~~~~~l~~~~~~~~~~~-lll~G~~G~GKt~la~~l~~~l~~~~~-------------- 103 (364)
...+|+++|||.+|++++||+.+++.|++++..++.+| +||+||+|+|||++|+.+++.+.|.+.
T Consensus 4 ~y~~l~~KyRP~~f~dIiGQe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~ 83 (725)
T PRK07133 4 KYKALYRKYRPKTFDDIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENV 83 (725)
T ss_pred chhhHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhh
Confidence 35789999999999999999999999999999999999 699999999999999999999988532
Q ss_pred --CCcEEEEeCCCCCChHHHHHHHHHHHhcCccccCCccceEEEEEeCCCCCCHHHHHHHHHHHHHhccCccEEEEeecc
Q 017884 104 --HNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQV 181 (364)
Q Consensus 104 --~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~ 181 (364)
+..++++++....+.+.+++.+... ...|+ .+ +++|+||||+|.|+..++++|+++||+||.++++|++|+.+
T Consensus 84 ~~~~Dvieidaasn~~vd~IReLie~~-~~~P~-~g---~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~ 158 (725)
T PRK07133 84 NNSLDIIEMDAASNNGVDEIRELIENV-KNLPT-QS---KYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEV 158 (725)
T ss_pred cCCCcEEEEeccccCCHHHHHHHHHHH-Hhchh-cC---CCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCCh
Confidence 2355667766556788888866554 44443 33 58999999999999999999999999999999999999999
Q ss_pred ccCchhhhccceEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhc-ccCchHHHHH
Q 017884 182 NKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMAS-QQITEEAVYL 260 (364)
Q Consensus 182 ~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~a~~~l~~~~~~~-~~i~~~~v~~ 260 (364)
+++.++++|||+++.|.+++.+++..++..++.++|+.+++++++.++..++|++|.|+++++.+..+. +.|+.++|..
T Consensus 159 ~KLl~TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI~id~eAl~~LA~lS~GslR~AlslLekl~~y~~~~It~e~V~e 238 (725)
T PRK07133 159 HKIPLTILSRVQRFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKLSSGSLRDALSIAEQVSIFGNNKITLKNVEE 238 (725)
T ss_pred hhhhHHHHhhceeEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCCCHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999876554 4699999999
Q ss_pred hcCCCChHHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc-----------------------CCC
Q 017884 261 CTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKI-----------------------KMP 317 (364)
Q Consensus 261 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~~~~-----------------------~~~ 317 (364)
+++......++.+++++..++...++.++.++. ..|.++..++..+...+|.+ .++
T Consensus 239 llg~~~~e~If~Ll~aI~~kd~~~aL~~l~~L~-~~ged~~~iL~~Ll~~~RDlLl~k~~~~~~ll~~~d~~~l~~~~~s 317 (725)
T PRK07133 239 LFGLVSNENLINLLNLLYSKDIKEVLNILNQIK-EQGIDPELLLISLINLVKEFIIFNKTKDNSLLEYYSEEDLEKLKID 317 (725)
T ss_pred HHcCCCHHHHHHHHHHHHcCCHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHhcCchhhhccCCHHHHHHhcCC
Confidence 999999999999999999999999999999988 89999999988887777753 223
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHH
Q 017884 318 SDVRVRLMNDLADIEYRLSFGCNDKLQLGSIISTFTQARSAIV 360 (364)
Q Consensus 318 ~~~~~~i~~~l~~~~~~l~~~~~~~~~l~~l~~~l~~~~~~~~ 360 (364)
...+..+++.+.++..+++...++++.+|.++.+++....++.
T Consensus 318 ~~~l~~~le~i~~~~~~L~~n~n~~l~lE~lll~L~~~~~~~~ 360 (725)
T PRK07133 318 DDFAYKFIEILFDLLKDLKISDNPNDTLEILIIKLLALSELEE 360 (725)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhcCCCch
Confidence 3456677899999999999999999999999999987655443
No 27
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=3.4e-42 Score=330.52 Aligned_cols=310 Identities=23% Similarity=0.334 Sum_probs=277.8
Q ss_pred CCChhhccCCCCCcchhccHHHHHHHHHHHhcCCCCc-EEEeCCCCccHHHHHHHHHHHHcCCC----------------
Q 017884 40 ASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPH-LLLYGPPGTGKTSTILAVARKLYGAQ---------------- 102 (364)
Q Consensus 40 ~~~~~~~~~p~~~~~~vg~~~~~~~l~~~~~~~~~~~-lll~G~~G~GKt~la~~l~~~l~~~~---------------- 102 (364)
...|.+||||.+|++++||++++..|.+++..++.+| +||+||+|+|||++|+.+++.++|.+
T Consensus 3 y~vla~KyRP~~f~dviGQe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C~ 82 (618)
T PRK14951 3 YLVLARKYRPRSFSEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVCQ 82 (618)
T ss_pred hHHHHHHHCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCccH
Confidence 4679999999999999999999999999999999999 69999999999999999999999853
Q ss_pred --------CCCcEEEEeCCCCCChHHHHHHHHHHHhcCccccCCccceEEEEEeCCCCCCHHHHHHHHHHHHHhccCccE
Q 017884 103 --------YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRF 174 (364)
Q Consensus 103 --------~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~ 174 (364)
.+.+++++++....+++.+++.+..... .+. . ++++|+||||+|.|+...++.|++++|+++.++.|
T Consensus 83 ~C~~i~~g~h~D~~eldaas~~~Vd~iReli~~~~~-~p~-~---g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~f 157 (618)
T PRK14951 83 ACRDIDSGRFVDYTELDAASNRGVDEVQQLLEQAVY-KPV-Q---GRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKF 157 (618)
T ss_pred HHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHh-Ccc-c---CCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEE
Confidence 2346788888777888999988766433 222 2 25899999999999999999999999999999999
Q ss_pred EEEeeccccCchhhhccceEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhc-ccC
Q 017884 175 ALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMAS-QQI 253 (364)
Q Consensus 175 Il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~a~~~l~~~~~~~-~~i 253 (364)
||+|+.+.++.++++|||..++|.+++.+++.+++..++.++|+.++++++..|++.++|++|.+++++++...+. +.|
T Consensus 158 IL~Ttd~~kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~ie~~AL~~La~~s~GslR~al~lLdq~ia~~~~~I 237 (618)
T PRK14951 158 VLATTDPQKVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVPAEPQALRLLARAARGSMRDALSLTDQAIAFGSGQL 237 (618)
T ss_pred EEEECCchhhhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999997765543 589
Q ss_pred chHHHHHhcCCCChHHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc-------------------
Q 017884 254 TEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKI------------------- 314 (364)
Q Consensus 254 ~~~~v~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~~~~------------------- 314 (364)
|.++|.++++......++.+++++..++...++..+.++. ..|.++..++..|...++++
T Consensus 238 t~~~V~~~Lg~~~~~~i~~LldaL~~~d~~~al~~l~~l~-~~G~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (618)
T PRK14951 238 QEAAVRQMLGSVDRSHVFRLIDALAQGDGRTVVETADELR-LNGLSAASTLEEMAAVLQRMAVLQAVPQAAAAATDPEAA 316 (618)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHcCCHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHhCcccccccChHHHH
Confidence 9999999999999999999999999999999999999998 88999999999998888765
Q ss_pred -------CCChHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHH
Q 017884 315 -------KMPSDVRVRLMNDLADIEYRLSFGCNDKLQLGSIISTFTQA 355 (364)
Q Consensus 315 -------~~~~~~~~~i~~~l~~~~~~l~~~~~~~~~l~~l~~~l~~~ 355 (364)
.++.+.+..++..+.+....+....++++++|-.+.+++..
T Consensus 317 ~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~em~l~r~~~~ 364 (618)
T PRK14951 317 EVARLAALMPADETQLLYSICLHGRAELGLAPDEYAALTMVLLRLLAF 364 (618)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhC
Confidence 33555677788888888889988899999999999888753
No 28
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=6.6e-42 Score=323.64 Aligned_cols=309 Identities=24% Similarity=0.353 Sum_probs=274.8
Q ss_pred CCChhhccCCCCCcchhccHHHHHHHHHHHhcCCCCc-EEEeCCCCccHHHHHHHHHHHHcCCC----------------
Q 017884 40 ASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPH-LLLYGPPGTGKTSTILAVARKLYGAQ---------------- 102 (364)
Q Consensus 40 ~~~~~~~~~p~~~~~~vg~~~~~~~l~~~~~~~~~~~-lll~G~~G~GKt~la~~l~~~l~~~~---------------- 102 (364)
..||.++|||.+|++++||+.++..|++++..++.+| ++||||+|+|||++|+.+++.+.|.+
T Consensus 3 y~~~~~kyRP~~f~diiGq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i 82 (486)
T PRK14953 3 YIPFARKYRPKFFKEVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEI 82 (486)
T ss_pred chHHHHhhCCCcHHHccChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHH
Confidence 4699999999999999999999999999999999999 68999999999999999999998732
Q ss_pred ---CCCcEEEEeCCCCCChHHHHHHHHHHHhcCccccCCccceEEEEEeCCCCCCHHHHHHHHHHHHHhccCccEEEEee
Q 017884 103 ---YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICN 179 (364)
Q Consensus 103 ---~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~ 179 (364)
...++++++++...+.+.++.. .+.....|+ ++ .++|+||||+|.|+...+++|++++++++.++.+|++++
T Consensus 83 ~~g~~~d~~eidaas~~gvd~ir~I-~~~~~~~P~-~~---~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~Il~tt 157 (486)
T PRK14953 83 DKGSFPDLIEIDAASNRGIDDIRAL-RDAVSYTPI-KG---KYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCTT 157 (486)
T ss_pred hcCCCCcEEEEeCccCCCHHHHHHH-HHHHHhCcc-cC---CeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEEC
Confidence 1235667777666778877764 444455554 33 589999999999999999999999999999999999999
Q ss_pred ccccCchhhhccceEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhc-ccCchHHH
Q 017884 180 QVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMAS-QQITEEAV 258 (364)
Q Consensus 180 ~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~a~~~l~~~~~~~-~~i~~~~v 258 (364)
..+++.+++++||+.+.|.+++.+++..|+..+++++|+.+++++++.|++.++||+|.++++++++..+. +.||.++|
T Consensus 158 ~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi~id~~al~~La~~s~G~lr~al~~Ldkl~~~~~~~It~~~V 237 (486)
T PRK14953 158 EYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQASEGGMRDAASLLDQASTYGEGKVTIKVV 237 (486)
T ss_pred CHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCcCHHHH
Confidence 88899999999999999999999999999999999999999999999999999999999999998886654 57999999
Q ss_pred HHhcCCCChHHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc----------------------CC
Q 017884 259 YLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKI----------------------KM 316 (364)
Q Consensus 259 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~~~~----------------------~~ 316 (364)
.++++......++++++++..++...++.++.++. ..|.++..++..+.++++++ .+
T Consensus 238 ~~~lg~~~~~~vf~Li~ai~~~d~~~al~~l~~L~-~~g~~~~~iL~~L~~~~rdll~~k~~~~~~~~~~~~~~~~~~~~ 316 (486)
T PRK14953 238 EEFLGIVSQESVRKFLNLLLESDVDEAIKFLRTLE-EKGYNLNKFWKQLEEEIRNILLNKSLKNPEEVFQVEDFYRKLEK 316 (486)
T ss_pred HHHhCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHhhcCChhhhcchHHHHHHhcC
Confidence 99999999999999999999999999999999988 89999999999999988865 12
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHH
Q 017884 317 PSDVRVRLMNDLADIEYRLSFGCNDKLQLGSIISTFTQA 355 (364)
Q Consensus 317 ~~~~~~~i~~~l~~~~~~l~~~~~~~~~l~~l~~~l~~~ 355 (364)
+...+..+++.+.+...+++. .|+++.+|.++.++|..
T Consensus 317 ~~~~l~~~~~~~~~~~~~l~~-~~~~~~~E~~ll~l~~~ 354 (486)
T PRK14953 317 PLEALLYLEDVINKAFSEART-RDPLRAYELAILKLLYV 354 (486)
T ss_pred CHHHHHHHHHHHHHHHHHHhc-cChhHHHHHHHHHHHhh
Confidence 244566778899999999999 99999999999999853
No 29
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=100.00 E-value=6.5e-42 Score=317.74 Aligned_cols=307 Identities=25% Similarity=0.413 Sum_probs=273.9
Q ss_pred CChhhccCCCCCcchhccHHHHHHHHHHHhcCCCCc-EEEeCCCCccHHHHHHHHHHHHcCCCC----------------
Q 017884 41 SPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPH-LLLYGPPGTGKTSTILAVARKLYGAQY---------------- 103 (364)
Q Consensus 41 ~~~~~~~~p~~~~~~vg~~~~~~~l~~~~~~~~~~~-lll~G~~G~GKt~la~~l~~~l~~~~~---------------- 103 (364)
+||.++|||.+|++++|++.++..|..++..++.+| ++||||||+|||++++.+++.+.|...
T Consensus 2 ~~~~~~~rp~~~~~iig~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~ 81 (355)
T TIGR02397 2 QVLARKYRPQTFEDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEIN 81 (355)
T ss_pred ccHHHHhCCCcHhhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHh
Confidence 699999999999999999999999999999999888 799999999999999999999987532
Q ss_pred ---CCcEEEEeCCCCCChHHHHHHHHHHHhcCccccCCccceEEEEEeCCCCCCHHHHHHHHHHHHHhccCccEEEEeec
Q 017884 104 ---HNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQ 180 (364)
Q Consensus 104 ---~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~ 180 (364)
+.+++++++....+.+.+++.+.. +...|+ ++ ++++|+|||++.++...++.|++++++++.++.+|+++++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~p~-~~---~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lIl~~~~ 156 (355)
T TIGR02397 82 SGSSLDVIEIDAASNNGVDDIREILDN-VKYAPS-SG---KYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFILATTE 156 (355)
T ss_pred cCCCCCEEEeeccccCCHHHHHHHHHH-HhcCcc-cC---CceEEEEeChhhcCHHHHHHHHHHHhCCccceeEEEEeCC
Confidence 345777777655566666765554 444443 33 5899999999999999999999999999999999999998
Q ss_pred cccCchhhhccceEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhc-ccCchHHHH
Q 017884 181 VNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMAS-QQITEEAVY 259 (364)
Q Consensus 181 ~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~a~~~l~~~~~~~-~~i~~~~v~ 259 (364)
+.++.+++++||..+.|++++.+++.+|+..+++++|+.+++++++.+++.++||+|.+.+.++++..+. +.||.++|.
T Consensus 157 ~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~g~~~~a~~~lekl~~~~~~~it~~~v~ 236 (355)
T TIGR02397 157 PHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIARAADGSLRDALSLLDQLISFGNGNITYEDVN 236 (355)
T ss_pred HHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCChHHHHHHHHHHHhhcCCCCCHHHHH
Confidence 8899999999999999999999999999999999999999999999999999999999999999888765 469999999
Q ss_pred HhcCCCChHHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc-------------------------
Q 017884 260 LCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKI------------------------- 314 (364)
Q Consensus 260 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~~~~------------------------- 314 (364)
++++......++++++++..++...++..+..+. ..|.++..++..+.++++.+
T Consensus 237 ~~~~~~~~~~i~~l~~ai~~~~~~~a~~~~~~l~-~~~~~~~~il~~l~~~~r~l~~~k~~~~~~~~i~~~~~~~l~~~a 315 (355)
T TIGR02397 237 ELLGLVDDEKLIELLEAILNKDTAEALKILDEIL-ESGVDPEKFLEDLIEILRDLLLIKKTPSNLLAVLESEQEFLKELA 315 (355)
T ss_pred HHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHhhcCccccccCHHHHHHHHHHH
Confidence 9999999999999999999999999999999988 78899999999988888764
Q ss_pred -CCChHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 017884 315 -KMPSDVRVRLMNDLADIEYRLSFGCNDKLQLGSIISTFT 353 (364)
Q Consensus 315 -~~~~~~~~~i~~~l~~~~~~l~~~~~~~~~l~~l~~~l~ 353 (364)
+++...+..+++.+.++++.++++.|..+.+|.++.++|
T Consensus 316 ~~~s~~~L~~~l~~l~~~~~~lk~~~~~~l~le~l~~~~~ 355 (355)
T TIGR02397 316 LKLSLEFLLRLLDILLEALKDLRFSNDPRIWLEMTLLRLL 355 (355)
T ss_pred HhCCHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHhC
Confidence 445556778899999999999999999999999999986
No 30
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=5e-42 Score=329.04 Aligned_cols=309 Identities=20% Similarity=0.285 Sum_probs=277.6
Q ss_pred CChhhccCCCCCcchhccHHHHHHHHHHHhcCCCCc-EEEeCCCCccHHHHHHHHHHHHcCCC-----------------
Q 017884 41 SPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPH-LLLYGPPGTGKTSTILAVARKLYGAQ----------------- 102 (364)
Q Consensus 41 ~~~~~~~~p~~~~~~vg~~~~~~~l~~~~~~~~~~~-lll~G~~G~GKt~la~~l~~~l~~~~----------------- 102 (364)
..|++||||.+|++++||+.++..|+.++.+++.+| ++||||+|+|||++|+++++.+.|..
T Consensus 4 ~~l~~kyRP~~f~diiGqe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~i~ 83 (563)
T PRK06647 4 RGTATKRRPRDFNSLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKSID 83 (563)
T ss_pred HHHHHHhCCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHHHH
Confidence 568999999999999999999999999999999999 89999999999999999999998852
Q ss_pred --CCCcEEEEeCCCCCChHHHHHHHHHHHhcCccccCCccceEEEEEeCCCCCCHHHHHHHHHHHHHhccCccEEEEeec
Q 017884 103 --YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQ 180 (364)
Q Consensus 103 --~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~ 180 (364)
.+.+++++++....+.+.+++..... ...|+ ++ +++++||||+|.|+..++++|++++++||.++.||++++.
T Consensus 84 ~~~~~dv~~idgas~~~vddIr~l~e~~-~~~p~-~~---~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte 158 (563)
T PRK06647 84 NDNSLDVIEIDGASNTSVQDVRQIKEEI-MFPPA-SS---RYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTE 158 (563)
T ss_pred cCCCCCeEEecCcccCCHHHHHHHHHHH-Hhchh-cC---CCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCC
Confidence 23467777776656778887755443 33333 33 5899999999999999999999999999999999999998
Q ss_pred cccCchhhhccceEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhc-ccCchHHHH
Q 017884 181 VNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMAS-QQITEEAVY 259 (364)
Q Consensus 181 ~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~a~~~l~~~~~~~-~~i~~~~v~ 259 (364)
+.++.++|+|||+.++|.+++.+++.+++..++.++|+.++++++..|++.++||+|.++++++++..+. +.||.++|.
T Consensus 159 ~~kL~~tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi~id~eAl~lLa~~s~GdlR~alslLdklis~~~~~It~e~V~ 238 (563)
T PRK06647 159 VHKLPATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIAYKSTGSVRDAYTLFDQVVSFSDSDITLEQIR 238 (563)
T ss_pred hHHhHHHHHHhceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhhcCCCCCHHHHH
Confidence 8999999999999999999999999999999999999999999999999999999999999998877654 589999999
Q ss_pred HhcCCCChHHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc-------------------------
Q 017884 260 LCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKI------------------------- 314 (364)
Q Consensus 260 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~~~~------------------------- 314 (364)
++++......++++++++..++..+++.++.++. ..|.++..++..+.+++|++
T Consensus 239 ~llg~~~~~~if~LidaI~~~D~~~al~~l~~Ll-~~G~d~~~iL~~Ll~~fRdLL~vK~G~~~~~~l~~~~e~l~k~~~ 317 (563)
T PRK06647 239 SKMGLTGDEFLEKLASSILNEDAKELLCVLDSVF-LSGVSVEQFLLDCIEFFRELLFLKHGIKNEAFIGIKAERLPEKLR 317 (563)
T ss_pred HHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHhcCCchhhhccccHHHHHHHHH
Confidence 9999999999999999999999999999999998 89999999999998888765
Q ss_pred CCChHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHH
Q 017884 315 KMPSDVRVRLMNDLADIEYRLSFGCNDKLQLGSIISTFTQA 355 (364)
Q Consensus 315 ~~~~~~~~~i~~~l~~~~~~l~~~~~~~~~l~~l~~~l~~~ 355 (364)
.++...+.++++.+.+++++++.+.++++.+|.++.++|..
T Consensus 318 ~~s~~~L~~~l~~Llea~~~lK~n~~~~l~lE~llikl~~~ 358 (563)
T PRK06647 318 EFDLSQIERAISVLLETYRDLQFSVNPRYELEINFSKILRL 358 (563)
T ss_pred hCCHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhc
Confidence 35566778899999999999999999999999999998853
No 31
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=9.2e-42 Score=326.25 Aligned_cols=310 Identities=21% Similarity=0.323 Sum_probs=279.1
Q ss_pred CCChhhccCCCCCcchhccHHHHHHHHHHHhcCCCCc-EEEeCCCCccHHHHHHHHHHHHcCCCC---------------
Q 017884 40 ASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPH-LLLYGPPGTGKTSTILAVARKLYGAQY--------------- 103 (364)
Q Consensus 40 ~~~~~~~~~p~~~~~~vg~~~~~~~l~~~~~~~~~~~-lll~G~~G~GKt~la~~l~~~l~~~~~--------------- 103 (364)
..+|.+||||++|++++||+++++.|++++..++.+| +||+||+|+|||++|+.+++.++|...
T Consensus 3 y~vLarKYRP~tFddIIGQe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i 82 (709)
T PRK08691 3 YQVLARKWRPKTFADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQI 82 (709)
T ss_pred chhHHHHhCCCCHHHHcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHH
Confidence 4679999999999999999999999999999999998 799999999999999999999988631
Q ss_pred ----CCcEEEEeCCCCCChHHHHHHHHHHHhcCccccCCccceEEEEEeCCCCCCHHHHHHHHHHHHHhccCccEEEEee
Q 017884 104 ----HNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICN 179 (364)
Q Consensus 104 ----~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~ 179 (364)
..+++++++....+++.+++.+... ...++ ++ +++|+||||+|.|+...++.|+++|++++.++.|||+|+
T Consensus 83 ~~g~~~DvlEidaAs~~gVd~IRelle~a-~~~P~-~g---k~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTt 157 (709)
T PRK08691 83 DAGRYVDLLEIDAASNTGIDNIREVLENA-QYAPT-AG---KYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATT 157 (709)
T ss_pred hccCccceEEEeccccCCHHHHHHHHHHH-Hhhhh-hC---CcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeC
Confidence 2356788877778888888877653 33332 33 489999999999999999999999999999999999999
Q ss_pred ccccCchhhhccceEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhc-ccCchHHH
Q 017884 180 QVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMAS-QQITEEAV 258 (364)
Q Consensus 180 ~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~a~~~l~~~~~~~-~~i~~~~v 258 (364)
.+.++..+++|||..+.|.+++.+++..+|..++.++|+.++++++..|++.++||+|.++++|+++..+. +.|+.++|
T Consensus 158 d~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A~GslRdAlnLLDqaia~g~g~It~e~V 237 (709)
T PRK08691 158 DPHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAAAGSMRDALSLLDQAIALGSGKVAENDV 237 (709)
T ss_pred CccccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCcCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998876653 58999999
Q ss_pred HHhcCCCChHHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc------------------------
Q 017884 259 YLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKI------------------------ 314 (364)
Q Consensus 259 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~~~~------------------------ 314 (364)
..+++......++.+++++..++...++..++++. ..|.++..++..|..+++++
T Consensus 238 ~~lLG~~d~~~If~LldAL~~~d~~~al~~l~~L~-~~G~d~~~~l~~L~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~a 316 (709)
T PRK08691 238 RQMIGAVDKQYLYELLTGIINQDGAALLAKAQEMA-ACAVGFDNALGELAILLQQLALIQAVPSALAHDDPDSDILHRLA 316 (709)
T ss_pred HHHHcccCHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCCCHHHHHHHHHHHHHHHHHhhcCchhccccchHHHHHHHHH
Confidence 99999999999999999999999999999999998 99999999999998888875
Q ss_pred -CCChHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHH
Q 017884 315 -KMPSDVRVRLMNDLADIEYRLSFGCNDKLQLGSIISTFTQA 355 (364)
Q Consensus 315 -~~~~~~~~~i~~~l~~~~~~l~~~~~~~~~l~~l~~~l~~~ 355 (364)
.++...+...++.+.+....++...++++.+|-.+.+++..
T Consensus 317 ~~~~~~~l~~~~q~~l~~~~~l~~a~~~~~~~Em~llrl~~~ 358 (709)
T PRK08691 317 QTISGEQIQLYYQIAVHGKRDLSLAPDEYAGFMMTLLRMLAF 358 (709)
T ss_pred HcCCHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhc
Confidence 45666677888889999999999999999999999998754
No 32
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=2.7e-41 Score=313.97 Aligned_cols=311 Identities=23% Similarity=0.352 Sum_probs=277.1
Q ss_pred CCCCChhhccCCCCCcchhccHHHHHHHHHHHhcCCCCc-EEEeCCCCccHHHHHHHHHHHHcCCC-------CCCcEEE
Q 017884 38 IKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPH-LLLYGPPGTGKTSTILAVARKLYGAQ-------YHNMILE 109 (364)
Q Consensus 38 ~~~~~~~~~~~p~~~~~~vg~~~~~~~l~~~~~~~~~~~-lll~G~~G~GKt~la~~l~~~l~~~~-------~~~~~~~ 109 (364)
.+..+|++||||.+|++++||+.+++.+.+.+..+..+| ++||||||+|||++++++++.+.|.+ ....+++
T Consensus 2 ~~~~~~~~k~rP~~~~~iig~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~ 81 (367)
T PRK14970 2 ENFVVSARKYRPQTFDDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFE 81 (367)
T ss_pred cchHHHHHHHCCCcHHhcCCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEE
Confidence 456799999999999999999999999999999998886 89999999999999999999998743 2345566
Q ss_pred EeCCCCCChHHHHHHHHHHHhcCccccCCccceEEEEEeCCCCCCHHHHHHHHHHHHHhccCccEEEEeeccccCchhhh
Q 017884 110 LNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQ 189 (364)
Q Consensus 110 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~l~~~l~ 189 (364)
++.....+.+.+++.+.... ..|+ ++ ++++|+|||++.++...++.|++++++++.++.+|++++...++.++++
T Consensus 82 l~~~~~~~~~~i~~l~~~~~-~~p~-~~---~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~l~ 156 (367)
T PRK14970 82 LDAASNNSVDDIRNLIDQVR-IPPQ-TG---KYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTIL 156 (367)
T ss_pred eccccCCCHHHHHHHHHHHh-hccc-cC---CcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHHHH
Confidence 66655556677777666543 3343 34 4889999999999999999999999999889999999998999999999
Q ss_pred ccceEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhc-ccCchHHHHHhcCCCChH
Q 017884 190 SRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMAS-QQITEEAVYLCTGNPLPK 268 (364)
Q Consensus 190 sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~a~~~l~~~~~~~-~~i~~~~v~~~~~~~~~~ 268 (364)
+||..++|++++.+++..|+..++.++|+.+++++++.|+..++||+|.+++.++++..+. ..||.++|..+++.....
T Consensus 157 sr~~~v~~~~~~~~~l~~~l~~~~~~~g~~i~~~al~~l~~~~~gdlr~~~~~lekl~~y~~~~it~~~v~~~~~~~~~~ 236 (367)
T PRK14970 157 SRCQIFDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKADGALRDALSIFDRVVTFCGKNITRQAVTENLNILDYD 236 (367)
T ss_pred hcceeEecCCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHhCCCCHH
Confidence 9999999999999999999999999999999999999999999999999999999988764 469999999999999999
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc---------------------------CCChHHH
Q 017884 269 DIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKI---------------------------KMPSDVR 321 (364)
Q Consensus 269 ~~~~l~~~l~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~~~~---------------------------~~~~~~~ 321 (364)
++|++++++..++...++..++++. ..|.++..++..+.++++.+ +++...+
T Consensus 237 ~if~l~~ai~~~~~~~a~~~~~~l~-~~~~~~~~il~~l~~~fr~ll~~k~~~~~~~l~~~~~~~~~~~~~a~~~s~~~L 315 (367)
T PRK14970 237 TYINVTDLILENKIPELLLAFNEIL-RKGFDGHHFIAGLASHFRDLMVSKTPATIALLEVGEQAKKRYEVQSQKVSQSFL 315 (367)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHhhccCccccccCCHHHHHHHHHHHHcCCHHHH
Confidence 9999999999999999999999988 88999999999998888765 4677788
Q ss_pred HHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHH
Q 017884 322 VRLMNDLADIEYRLSFGCNDKLQLGSIISTFTQ 354 (364)
Q Consensus 322 ~~i~~~l~~~~~~l~~~~~~~~~l~~l~~~l~~ 354 (364)
..++..+.+++++++++.++.+.+|.++.+++.
T Consensus 316 ~~~l~~l~~~d~~lK~~~~~~l~lE~~l~~l~~ 348 (367)
T PRK14970 316 LSGIDIANDCDLKYKLSKNQRLLVELALMQLAS 348 (367)
T ss_pred HHHHHHHHHHHHHHhcCCChhHHHHHHHHHHhh
Confidence 899999999999999999999999999999874
No 33
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=1.4e-41 Score=326.86 Aligned_cols=311 Identities=19% Similarity=0.314 Sum_probs=272.4
Q ss_pred CCChhhccCCCCCcchhccHHHHHHHHHHHhcCCCCc-EEEeCCCCccHHHHHHHHHHHHcCCC----------------
Q 017884 40 ASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPH-LLLYGPPGTGKTSTILAVARKLYGAQ---------------- 102 (364)
Q Consensus 40 ~~~~~~~~~p~~~~~~vg~~~~~~~l~~~~~~~~~~~-lll~G~~G~GKt~la~~l~~~l~~~~---------------- 102 (364)
..+|.+||||.+|++++||++++..|.+.+..++.+| +||+||+|+|||++|+.+++.++|..
T Consensus 3 y~~La~KyRP~~f~divGQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~i 82 (647)
T PRK07994 3 YQVLARKWRPQTFAEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCREI 82 (647)
T ss_pred chhHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHHH
Confidence 4689999999999999999999999999999999999 69999999999999999999999842
Q ss_pred ---CCCcEEEEeCCCCCChHHHHHHHHHHHhcCccccCCccceEEEEEeCCCCCCHHHHHHHHHHHHHhccCccEEEEee
Q 017884 103 ---YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICN 179 (364)
Q Consensus 103 ---~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~ 179 (364)
.+.+++++++....+++.+++.+..+... +. .++++|+||||+|.|+...+++|+++||+|+.+++||++|+
T Consensus 83 ~~g~~~D~ieidaas~~~VddiR~li~~~~~~-p~----~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt 157 (647)
T PRK07994 83 EQGRFVDLIEIDAASRTKVEDTRELLDNVQYA-PA----RGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATT 157 (647)
T ss_pred HcCCCCCceeecccccCCHHHHHHHHHHHHhh-hh----cCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecC
Confidence 23357788877667888888877664432 21 12589999999999999999999999999999999999999
Q ss_pred ccccCchhhhccceEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHh-cccCchHHH
Q 017884 180 QVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMA-SQQITEEAV 258 (364)
Q Consensus 180 ~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~a~~~l~~~~~~-~~~i~~~~v 258 (364)
.+.++.++|+|||..+.|.+++.+++..+|..++.++++.++++++..|+..++|++|.++++++.+... .+.|+.++|
T Consensus 158 ~~~kLl~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i~~e~~aL~~Ia~~s~Gs~R~Al~lldqaia~~~~~it~~~v 237 (647)
T PRK07994 158 DPQKLPVTILSRCLQFHLKALDVEQIRQQLEHILQAEQIPFEPRALQLLARAADGSMRDALSLTDQAIASGNGQVTTDDV 237 (647)
T ss_pred CccccchHHHhhheEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCcCHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999765544 468999999
Q ss_pred HHhcCCCChHHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc------------------------
Q 017884 259 YLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKI------------------------ 314 (364)
Q Consensus 259 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~~~~------------------------ 314 (364)
..+++......+.++++++..++...++.++.++. ..|.++..++..+...++++
T Consensus 238 ~~~lg~~d~~~~~~ll~al~~~d~~~~l~~~~~l~-~~g~d~~~~L~~l~~~lrdil~~q~~~~~~~~~~~d~~~~l~~l 316 (647)
T PRK07994 238 SAMLGTLDDDQALSLLEALVEGDGERVMALINQLA-ERGPDWEGLLVELLELLHRIAMAQLLPAALDNDMADIELRLREL 316 (647)
T ss_pred HHHHccCCHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCCCHHHHHHHHHHHHHHHHHHHhccchhcccchhHHHHHHHH
Confidence 99999888888999999999999999999999987 88988888777776666544
Q ss_pred --CCChHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Q 017884 315 --KMPSDVRVRLMNDLADIEYRLSFGCNDKLQLGSIISTFTQAR 356 (364)
Q Consensus 315 --~~~~~~~~~i~~~l~~~~~~l~~~~~~~~~l~~l~~~l~~~~ 356 (364)
.++...+..+++.+.+....+..+.|.++.+|.++.++...+
T Consensus 317 a~~~s~~~l~~~~q~~~~~~~~L~~n~n~~l~lE~~llr~~~~~ 360 (647)
T PRK07994 317 ARTLPPEDVQLYYQTLLIGRKDLPLAPDRRMGVEMTLLRMLAFH 360 (647)
T ss_pred HHhCCHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhcC
Confidence 234445566788888999999999999999999999987543
No 34
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=100.00 E-value=3.1e-41 Score=282.75 Aligned_cols=313 Identities=30% Similarity=0.530 Sum_probs=265.5
Q ss_pred ChhhccCCCCCcchhccHHHHHHHHHHHhcCCCCcEEEeCCCCccHHHHHHHHHHHHcCCC-------------------
Q 017884 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ------------------- 102 (364)
Q Consensus 42 ~~~~~~~p~~~~~~vg~~~~~~~l~~~~~~~~~~~lll~G~~G~GKt~la~~l~~~l~~~~------------------- 102 (364)
+|.++|||.+++.++++++....|+.....+..||+++|||+|+||.|.+.++.+++++.+
T Consensus 2 LWvdkyrpksl~~l~~~~e~~~~Lksl~~~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kkl 81 (351)
T KOG2035|consen 2 LWVDKYRPKSLDELIYHEELANLLKSLSSTGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKL 81 (351)
T ss_pred cchhhcCcchhhhcccHHHHHHHHHHhcccCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceE
Confidence 6999999999999999999999999999989999999999999999999999999999864
Q ss_pred -----CCCcEEEEeCCCCCChH--HHHHHHHHHHhcCccccCCccceEEEEEeCCCCCCHHHHHHHHHHHHHhccCccEE
Q 017884 103 -----YHNMILELNASDDRGID--VVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFA 175 (364)
Q Consensus 103 -----~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~I 175 (364)
.+.+++++++++....| .+.+.+++.+++.+..+......++|+|.|+|.|+.++|.+|+++||.+..++++|
T Consensus 82 EistvsS~yHlEitPSDaG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~~~RlI 161 (351)
T KOG2035|consen 82 EISTVSSNYHLEITPSDAGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADELTRDAQHALRRTMEKYSSNCRLI 161 (351)
T ss_pred EEEEecccceEEeChhhcCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhhhHHHHHHHHHHHHHHhcCceEE
Confidence 13456677776643333 56788889998888766666689999999999999999999999999999999999
Q ss_pred EEeeccccCchhhhccceEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCch
Q 017884 176 LICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITE 255 (364)
Q Consensus 176 l~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~a~~~l~~~~~~~~~i~~ 255 (364)
++||+.+++.++++|||..++++.|+++++...+...++++|+.++.+.+..+++.++||+|+|+-.++.+.......+.
T Consensus 162 l~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~lp~~~l~rIa~kS~~nLRrAllmlE~~~~~n~~~~a 241 (351)
T KOG2035|consen 162 LVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQLPKELLKRIAEKSNRNLRRALLMLEAVRVNNEPFTA 241 (351)
T ss_pred EEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcccCcHHHHHHHHHHhcccHHHHHHHHHHHHhccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988876544433
Q ss_pred HHHHHhcCCCC-hHHHHHHHHHHHhcc----HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 017884 256 EAVYLCTGNPL-PKDIEQISYWLLNES----FADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLAD 330 (364)
Q Consensus 256 ~~v~~~~~~~~-~~~~~~l~~~l~~~~----~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~i~~~l~~ 330 (364)
.. ....... +..+.++...+.... +.+.+..+.+++ .++++|..|+..|...+.. +.+......++++.+.
T Consensus 242 ~~--~~i~~~dWe~~i~e~a~~i~~eQs~~~L~~vR~~LYeLL-~~CIPP~~Ilk~Ll~~Ll~-~~d~~~k~~~~~~Aa~ 317 (351)
T KOG2035|consen 242 NS--QVIPKPDWEIYIQEIARVILKEQSPAKLLEVRGRLYELL-SHCIPPNTILKELLEELLL-KCDTQLKLEVIQHAAK 317 (351)
T ss_pred cC--CCCCCccHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH-hccCChHHHHHHHHHHHHh-cCCchhHHHHHHHHHH
Confidence 32 1111111 112333333333322 233556788888 9999999999999999987 7788888999999999
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHHHHHH
Q 017884 331 IEYRLSFGCNDKLQLGSIISTFTQARSA 358 (364)
Q Consensus 331 ~~~~l~~~~~~~~~l~~l~~~l~~~~~~ 358 (364)
+|+++..|....+|||+|+++++.+.+.
T Consensus 318 yEhRl~lG~KaIfHLEaFVA~fM~iy~~ 345 (351)
T KOG2035|consen 318 YEHRLRLGQKAIFHLEAFVAKFMCIYKK 345 (351)
T ss_pred HHHHHhhcchhhhhHHHHHHHHHHHHHH
Confidence 9999999999999999999999887654
No 35
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=2.6e-41 Score=322.08 Aligned_cols=310 Identities=20% Similarity=0.305 Sum_probs=270.3
Q ss_pred CCChhhccCCCCCcchhccHHHHHHHHHHHhcCCCCc-EEEeCCCCccHHHHHHHHHHHHcCCC----------------
Q 017884 40 ASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPH-LLLYGPPGTGKTSTILAVARKLYGAQ---------------- 102 (364)
Q Consensus 40 ~~~~~~~~~p~~~~~~vg~~~~~~~l~~~~~~~~~~~-lll~G~~G~GKt~la~~l~~~l~~~~---------------- 102 (364)
..||++||||.+|++++||+.+++.|.+++..++.+| +||+||+|+|||++|+.+++.++|..
T Consensus 3 ~~~la~KyRP~sf~dIiGQe~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i 82 (624)
T PRK14959 3 HASLTARYRPQTFAEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKV 82 (624)
T ss_pred cchHHHHhCCCCHHHhcCCHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHH
Confidence 4689999999999999999999999999999998777 89999999999999999999999852
Q ss_pred ---CCCcEEEEeCCCCCChHHHHHHHHHHHhcCccccCCccceEEEEEeCCCCCCHHHHHHHHHHHHHhccCccEEEEee
Q 017884 103 ---YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICN 179 (364)
Q Consensus 103 ---~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~ 179 (364)
.+.+++++++....+++.++..+.. ....++ .+ +++||||||+|.|+...++.|+++||+++.+++||++|+
T Consensus 83 ~~g~hpDv~eId~a~~~~Id~iR~L~~~-~~~~p~-~g---~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt 157 (624)
T PRK14959 83 TQGMHVDVVEIDGASNRGIDDAKRLKEA-IGYAPM-EG---RYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATT 157 (624)
T ss_pred hcCCCCceEEEecccccCHHHHHHHHHH-HHhhhh-cC---CceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecC
Confidence 2455778887666788888874443 333332 22 589999999999999999999999999999999999999
Q ss_pred ccccCchhhhccceEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHh-cccCchHHH
Q 017884 180 QVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMA-SQQITEEAV 258 (364)
Q Consensus 180 ~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~a~~~l~~~~~~-~~~i~~~~v 258 (364)
.+.++.++|+|||++++|.+++.+++..+|..++.++++.+++++++.|++.++||+|.++++|+++... .+.||.++|
T Consensus 158 ~~~kll~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi~id~eal~lIA~~s~GdlR~Al~lLeqll~~g~~~It~d~V 237 (624)
T PRK14959 158 EPHKFPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIARRAAGSVRDSMSLLGQVLALGESRLTIDGA 237 (624)
T ss_pred ChhhhhHHHHhhhhccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCcCHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999876532 358999999
Q ss_pred HHhcCCCChHHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc------------------------
Q 017884 259 YLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKI------------------------ 314 (364)
Q Consensus 259 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~~~~------------------------ 314 (364)
..+++......++++++++..++...++.++..++ ..|.++..++..|..+++++
T Consensus 238 ~~~lg~~~~e~vfeLl~AL~~~D~~aal~~l~~Ll-~~g~d~~~iL~~Ll~~~RdLLl~k~~~~~~~~~l~i~~~~~~~~ 316 (624)
T PRK14959 238 RGVLGLAGQELFLRLMEALAAQDCLGVANVVRELL-DRGVDMGFFLRELVATWRNLFMLRQAGEAALASLDLPEDEARQW 316 (624)
T ss_pred HHHhCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHhhhccccchhhcccCHHHHHHH
Confidence 99999999899999999999999999999999988 78888888888777777654
Q ss_pred -----CCChHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHH
Q 017884 315 -----KMPSDVRVRLMNDLADIEYRLSFGCNDKLQLGSIISTFTQA 355 (364)
Q Consensus 315 -----~~~~~~~~~i~~~l~~~~~~l~~~~~~~~~l~~l~~~l~~~ 355 (364)
+++...+..+++.+.+...+++.+.|.++.+|.++.+++..
T Consensus 317 ~~~A~~~s~~~L~~~l~~il~~~~~l~~n~n~rl~lE~lLL~l~~~ 362 (624)
T PRK14959 317 LGWAKRFEPAHIHACWQMTLEGQRRVLTSLEPAMALELLLLNLAML 362 (624)
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhc
Confidence 23334455668888899999999999999999999998753
No 36
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=7.2e-41 Score=315.08 Aligned_cols=307 Identities=23% Similarity=0.373 Sum_probs=272.5
Q ss_pred ChhhccCCCCCcchhccHHHHHHHHHHHhcCCCCc-EEEeCCCCccHHHHHHHHHHHHcCCCC-----------------
Q 017884 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPH-LLLYGPPGTGKTSTILAVARKLYGAQY----------------- 103 (364)
Q Consensus 42 ~~~~~~~p~~~~~~vg~~~~~~~l~~~~~~~~~~~-lll~G~~G~GKt~la~~l~~~l~~~~~----------------- 103 (364)
.|.++|||.+|++++||++++..|...+..++.+| ++|+||||+|||++|+++++.+.|...
T Consensus 3 ~l~~kyRP~~~~divGq~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~ 82 (472)
T PRK14962 3 ALYRKYRPKTFSEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDE 82 (472)
T ss_pred hhHHHHCCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhc
Confidence 58899999999999999999999999999999988 799999999999999999999987532
Q ss_pred --CCcEEEEeCCCCCChHHHHHHHHHHHhcCccccCCccceEEEEEeCCCCCCHHHHHHHHHHHHHhccCccEEEEeecc
Q 017884 104 --HNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQV 181 (364)
Q Consensus 104 --~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~ 181 (364)
...+++++++...+.+.++. +.+.....++ ++ ++++++|||+|.++...++.|++++++++.++.+|++++.+
T Consensus 83 g~~~dv~el~aa~~~gid~iR~-i~~~~~~~p~-~~---~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Ilattn~ 157 (472)
T PRK14962 83 GTFMDVIELDAASNRGIDEIRK-IRDAVGYRPM-EG---KYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTNL 157 (472)
T ss_pred CCCCccEEEeCcccCCHHHHHH-HHHHHhhChh-cC---CeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEEEeCCh
Confidence 33678888877778888886 4444444443 33 48999999999999999999999999999999999999888
Q ss_pred ccCchhhhccceEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhc-ccCchHHHHH
Q 017884 182 NKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMAS-QQITEEAVYL 260 (364)
Q Consensus 182 ~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~a~~~l~~~~~~~-~~i~~~~v~~ 260 (364)
.++.+++++||.++.|.+++.+++..++..++..+++.+++++++.|++.++||+|.+++.|+.+..+. +.||.++|..
T Consensus 158 ~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi~i~~eal~~Ia~~s~GdlR~aln~Le~l~~~~~~~It~e~V~~ 237 (472)
T PRK14962 158 EKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAKRASGGLRDALTMLEQVWKFSEGKITLETVHE 237 (472)
T ss_pred HhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCHHHHHH
Confidence 899999999999999999999999999999999999999999999999999999999999999877654 4799999999
Q ss_pred hcCCCChHHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-cCCCh-HHHHHHHHHHHHHHHHHhcC
Q 017884 261 CTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFK-IKMPS-DVRVRLMNDLADIEYRLSFG 338 (364)
Q Consensus 261 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~~~-~~~~~-~~~~~i~~~l~~~~~~l~~~ 338 (364)
+++......++.+++++.++|..+++.++.+++ ..|++|..+++.+...+.. .+..+ .....+...+.++-..++..
T Consensus 238 ~l~~~~~~~i~~li~si~~~d~~~Al~~l~~ll-~~Gedp~~i~r~l~~~~~edi~~a~~~~~~~~~~~~~~~~~~i~~~ 316 (472)
T PRK14962 238 ALGLIPIEVVRDYINAIFNGDVKRVFTVLDDVY-YSGKDYEVLIQQAIEDLVEDLERERANDIIQVSRQLLNILREIKFA 316 (472)
T ss_pred HHcCCCHHHHHHHHHHHHcCCHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHHHhCCc
Confidence 999999999999999999999999999999999 8899999999999888874 34444 66777888888888888888
Q ss_pred CChHHHHHHHHHHHHH
Q 017884 339 CNDKLQLGSIISTFTQ 354 (364)
Q Consensus 339 ~~~~~~l~~l~~~l~~ 354 (364)
.+.....+-++.+++.
T Consensus 317 e~~~~l~~~~~~~~~~ 332 (472)
T PRK14962 317 EEKRLVCKLGSASIAT 332 (472)
T ss_pred chHHHHHHHHHHHHHH
Confidence 8888888888887774
No 37
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=1.2e-40 Score=316.20 Aligned_cols=310 Identities=18% Similarity=0.274 Sum_probs=271.2
Q ss_pred CCChhhccCCCCCcchhccHHHHHHHHHHHhcCCCCc-EEEeCCCCccHHHHHHHHHHHHcCCC----------------
Q 017884 40 ASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPH-LLLYGPPGTGKTSTILAVARKLYGAQ---------------- 102 (364)
Q Consensus 40 ~~~~~~~~~p~~~~~~vg~~~~~~~l~~~~~~~~~~~-lll~G~~G~GKt~la~~l~~~l~~~~---------------- 102 (364)
..+|.+||||.+|++++||+++++.|...+..++.+| ++|+||+|+|||++|+.+++.+.|..
T Consensus 3 y~~La~KyRP~~f~diiGq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i 82 (546)
T PRK14957 3 YQALARKYRPQSFAEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAI 82 (546)
T ss_pred chhHHHHHCcCcHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHH
Confidence 5789999999999999999999999999999999999 79999999999999999999998742
Q ss_pred ---CCCcEEEEeCCCCCChHHHHHHHHHHHhcCccccCCccceEEEEEeCCCCCCHHHHHHHHHHHHHhccCccEEEEee
Q 017884 103 ---YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICN 179 (364)
Q Consensus 103 ---~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~ 179 (364)
...+++++++....+.+.+++.+..+. ..++ ++ +++|+||||+|.|+...++.|+++||++|.++.||++|+
T Consensus 83 ~~~~~~dlieidaas~~gvd~ir~ii~~~~-~~p~-~g---~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~Tt 157 (546)
T PRK14957 83 NNNSFIDLIEIDAASRTGVEETKEILDNIQ-YMPS-QG---RYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATT 157 (546)
T ss_pred hcCCCCceEEeecccccCHHHHHHHHHHHH-hhhh-cC---CcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEEEC
Confidence 234677777766678888887776543 3333 33 589999999999999999999999999999999999999
Q ss_pred ccccCchhhhccceEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHh-cccCchHHH
Q 017884 180 QVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMA-SQQITEEAV 258 (364)
Q Consensus 180 ~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~a~~~l~~~~~~-~~~i~~~~v 258 (364)
...++.++++|||.+++|.+++.+++..++..+++++|+.+++++++.|++.++||+|.+++.++++..+ .+.|+.++|
T Consensus 158 d~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi~~e~~Al~~Ia~~s~GdlR~alnlLek~i~~~~~~It~~~V 237 (546)
T PRK14957 158 DYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAYHAKGSLRDALSLLDQAISFCGGELKQAQI 237 (546)
T ss_pred ChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCCCHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999987765 368999999
Q ss_pred HHhcCCCChHHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc------------------------
Q 017884 259 YLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKI------------------------ 314 (364)
Q Consensus 259 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~~~~------------------------ 314 (364)
.++++......++++++++..++...++..+.++. ..+.+...++..+...+.+.
T Consensus 238 ~~~l~~~~~~~v~~ll~Al~~~d~~~~l~~~~~l~-~~~~~~~~~l~~l~~~~~r~~~~~~~~~~~~~~~~~~~~i~~~a 316 (546)
T PRK14957 238 KQMLGIIDSEEVYSIINAIIDNDPKAILPAIKNLA-LTESSADAVLDRIAEIWFACCIYSFTQSLDAVNDIDVDIINNIL 316 (546)
T ss_pred HHHHccCCHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCCCHHHHHHHHHHHHHHHHHHHhcccccccchhhHHHHHHHH
Confidence 99999988888999999999999999999998888 77888777776655211111
Q ss_pred -CCChHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHH
Q 017884 315 -KMPSDVRVRLMNDLADIEYRLSFGCNDKLQLGSIISTFTQA 355 (364)
Q Consensus 315 -~~~~~~~~~i~~~l~~~~~~l~~~~~~~~~l~~l~~~l~~~ 355 (364)
+++...+..+++.+.+....++.+.+.++.+|-.+.+++..
T Consensus 317 ~~~s~~~l~~~~~~~~~~~~~l~~~~~~~~~~em~l~r~~~~ 358 (546)
T PRK14957 317 AKISIEQAHFLYQLTITAKKDIALAPNFETGVTMAILRLIAF 358 (546)
T ss_pred HhCCHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhc
Confidence 44666677889999999999999999999999999988754
No 38
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=1e-40 Score=324.62 Aligned_cols=309 Identities=22% Similarity=0.377 Sum_probs=276.7
Q ss_pred CChhhccCCCCCcchhccHHHHHHHHHHHhcCCCCc-EEEeCCCCccHHHHHHHHHHHHcCCCC----------------
Q 017884 41 SPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPH-LLLYGPPGTGKTSTILAVARKLYGAQY---------------- 103 (364)
Q Consensus 41 ~~~~~~~~p~~~~~~vg~~~~~~~l~~~~~~~~~~~-lll~G~~G~GKt~la~~l~~~l~~~~~---------------- 103 (364)
+-|.+||||.+|++++||+++++.|+.++..++.+| +||+||+|+|||++++.+++.+.|...
T Consensus 4 ~~l~~kyRP~~~~eiiGq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~c~~i 83 (585)
T PRK14950 4 QVLYRKWRSQTFAELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEMCRAI 83 (585)
T ss_pred HHHHHHhCCCCHHHhcCCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHHHHHH
Confidence 348899999999999999999999999999999888 699999999999999999999987532
Q ss_pred ----CCcEEEEeCCCCCChHHHHHHHHHHHhcCccccCCccceEEEEEeCCCCCCHHHHHHHHHHHHHhccCccEEEEee
Q 017884 104 ----HNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICN 179 (364)
Q Consensus 104 ----~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~ 179 (364)
+.+++++++....+.+.+++.+.. ....++ ++ +++||||||+|.|+.+.++.|++++++++.++.||++++
T Consensus 84 ~~~~~~d~~~i~~~~~~~vd~ir~ii~~-~~~~p~-~~---~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~ 158 (585)
T PRK14950 84 AEGSAVDVIEMDAASHTSVDDAREIIER-VQFRPA-LA---RYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATT 158 (585)
T ss_pred hcCCCCeEEEEeccccCCHHHHHHHHHH-HhhCcc-cC---CeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeC
Confidence 245677777666678888876544 344443 33 589999999999999999999999999999999999999
Q ss_pred ccccCchhhhccceEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhc-ccCchHHH
Q 017884 180 QVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMAS-QQITEEAV 258 (364)
Q Consensus 180 ~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~a~~~l~~~~~~~-~~i~~~~v 258 (364)
..+++.+++++||..+.|.+++..++..++..++.++|+.++++++..|+..++||+|.+++.++++..+. +.||.++|
T Consensus 159 ~~~kll~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl~i~~eal~~La~~s~Gdlr~al~~LekL~~y~~~~It~e~V 238 (585)
T PRK14950 159 EVHKVPATILSRCQRFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIARAATGSMRDAENLLQQLATTYGGEISLSQV 238 (585)
T ss_pred ChhhhhHHHHhccceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999987753 58999999
Q ss_pred HHhcCCCChHHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc------------------------
Q 017884 259 YLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKI------------------------ 314 (364)
Q Consensus 259 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~~~~------------------------ 314 (364)
..+++.....+++++++++..++...++.++..+. ..|.++..++..+.++++.+
T Consensus 239 ~~ll~~s~~~~vf~Lidal~~~d~~~al~~l~~L~-~~g~~~~~il~~L~~~lR~Ll~lk~g~~~~~l~i~p~~~~~~~~ 317 (585)
T PRK14950 239 QSLLGISGDEEVKALAEALLAKDLKAALRTLNAVA-ADGADLRQFTRDLVEYLRQVMLLNSGADRSLLDLTADEKAALQK 317 (585)
T ss_pred HHHhcCCCHHHHHHHHHHHHcCCHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHhhcCccccccCCHHHHHHHHH
Confidence 99999999999999999999999999999999998 88999999999888888764
Q ss_pred ---CCChHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHH
Q 017884 315 ---KMPSDVRVRLMNDLADIEYRLSFGCNDKLQLGSIISTFTQA 355 (364)
Q Consensus 315 ---~~~~~~~~~i~~~l~~~~~~l~~~~~~~~~l~~l~~~l~~~ 355 (364)
.++...+..+++.+.++|+.+|+|.++++.+|.++.++|..
T Consensus 318 qa~~~s~~~L~~~l~~l~~~D~~lK~~~~~~l~lE~~l~~~~~~ 361 (585)
T PRK14950 318 VSQIANLEALTKWVKAFSQLDFQLRTTSYGQLPLELAVIEALLV 361 (585)
T ss_pred HHhcCCHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHhcC
Confidence 45667788999999999999999988899999999998853
No 39
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=100.00 E-value=1.2e-41 Score=317.00 Aligned_cols=311 Identities=23% Similarity=0.365 Sum_probs=279.3
Q ss_pred CCChhhccCCCCCcchhccHHHHHHHHHHHhcCCCCc-EEEeCCCCccHHHHHHHHHHHHcCCC----------------
Q 017884 40 ASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPH-LLLYGPPGTGKTSTILAVARKLYGAQ---------------- 102 (364)
Q Consensus 40 ~~~~~~~~~p~~~~~~vg~~~~~~~l~~~~~~~~~~~-lll~G~~G~GKt~la~~l~~~l~~~~---------------- 102 (364)
..+++.||||++|++++||+.++..|.+.+..++..| ++|+||-|+|||++|+.+|+.++|.+
T Consensus 3 yq~L~rKyRP~~F~evvGQe~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~Ck~I 82 (515)
T COG2812 3 YQVLARKYRPKTFDDVVGQEHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISCKEI 82 (515)
T ss_pred hHHHHHHhCcccHHHhcccHHHHHHHHHHHHhCcchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhhHhh
Confidence 3568999999999999999999999999999999999 89999999999999999999999984
Q ss_pred ---CCCcEEEEeCCCCCChHHHHHHHHHHHhcCccccCCccceEEEEEeCCCCCCHHHHHHHHHHHHHhccCccEEEEee
Q 017884 103 ---YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICN 179 (364)
Q Consensus 103 ---~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~ 179 (364)
...+++++++....+++.+++.++..... |. .+++||++|||+|.|+..+.++|++++|+||.++.|||+|.
T Consensus 83 ~~g~~~DviEiDaASn~gVddiR~i~e~v~y~-P~----~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATT 157 (515)
T COG2812 83 NEGSLIDVIEIDAASNTGVDDIREIIEKVNYA-PS----EGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATT 157 (515)
T ss_pred hcCCcccchhhhhhhccChHHHHHHHHHhccC-Cc----cccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecC
Confidence 23568888888888999999977765433 22 22699999999999999999999999999999999999999
Q ss_pred ccccCchhhhccceEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhc-ccCchHHH
Q 017884 180 QVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMAS-QQITEEAV 258 (364)
Q Consensus 180 ~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~a~~~l~~~~~~~-~~i~~~~v 258 (364)
.+.+++.++.|||+.+.|..++.+++...|..++.++++.++++++..+++.++|.+|+++++|+.+.... +.||.+.|
T Consensus 158 e~~Kip~TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a~Gs~RDalslLDq~i~~~~~~It~~~v 237 (515)
T COG2812 158 EPQKIPNTILSRCQRFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARAAEGSLRDALSLLDQAIAFGEGEITLESV 237 (515)
T ss_pred CcCcCchhhhhccccccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHcCCChhhHHHHHHHHHHccCCcccHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998877655 58999999
Q ss_pred HHhcCCCChHHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc------------------------
Q 017884 259 YLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKI------------------------ 314 (364)
Q Consensus 259 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~~~~------------------------ 314 (364)
..+++......+..+++++..+|...++..++++. ..|.++..++..+..+++..
T Consensus 238 ~~~lG~~~~~~~~~~~~~i~~~d~~~~~~~~~~l~-~~G~~~~~~l~dl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 316 (515)
T COG2812 238 RDMLGLTDIEKLLSLLEAILKGDAKEALRLINELI-EEGKDPEAFLEDLLNFLRDLLLFKQTVPNELQLNTTEIEERTKE 316 (515)
T ss_pred HHHhCCCCHHHHHHHHHHHHccCHHHHHHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHhcccchhhccchhhhHHHHH
Confidence 99999999999999999999999999999999998 99999999999988888652
Q ss_pred ---CCChHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Q 017884 315 ---KMPSDVRVRLMNDLADIEYRLSFGCNDKLQLGSIISTFTQAR 356 (364)
Q Consensus 315 ---~~~~~~~~~i~~~l~~~~~~l~~~~~~~~~l~~l~~~l~~~~ 356 (364)
.++...+..+++.+......++.+.++++.++.++.+++...
T Consensus 317 ~a~~~~~~~l~~~~~~~~~~~~e~~~s~~~~~~~E~~lirl~~~~ 361 (515)
T COG2812 317 LASQISVLNLQRLYQLLLPGLKELKRSLSPRLGLEMTLIRLLEAA 361 (515)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhhc
Confidence 122223445677777777788888999999999999998764
No 40
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=1.5e-40 Score=322.23 Aligned_cols=309 Identities=22% Similarity=0.360 Sum_probs=275.9
Q ss_pred CCChhhccCCCCCcchhccHHHHHHHHHHHhcCCCCc-EEEeCCCCccHHHHHHHHHHHHcCCC----------------
Q 017884 40 ASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPH-LLLYGPPGTGKTSTILAVARKLYGAQ---------------- 102 (364)
Q Consensus 40 ~~~~~~~~~p~~~~~~vg~~~~~~~l~~~~~~~~~~~-lll~G~~G~GKt~la~~l~~~l~~~~---------------- 102 (364)
..||.++|||.+|++++||+.++..|..++..++.+| +||+||+|+|||++|+++++.++|..
T Consensus 3 ~~pl~~kyRP~~f~~liGq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~~C~ 82 (620)
T PRK14948 3 YEPLHHKYRPQRFDELVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCELCR 82 (620)
T ss_pred cchHHHHhCCCcHhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccHHHH
Confidence 5789999999999999999999999999999988765 89999999999999999999999842
Q ss_pred -----CCCcEEEEeCCCCCChHHHHHHHHHHHhcCccccCCccceEEEEEeCCCCCCHHHHHHHHHHHHHhccCccEEEE
Q 017884 103 -----YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALI 177 (364)
Q Consensus 103 -----~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~Il~ 177 (364)
.+.++++++.....+++.+++.+... ...++ ++ +++|+||||+|.|+...+++|+++||+++.+++||++
T Consensus 83 ~i~~g~h~D~~ei~~~~~~~vd~IReii~~a-~~~p~-~~---~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~ 157 (620)
T PRK14948 83 AIAAGNALDVIEIDAASNTGVDNIRELIERA-QFAPV-QA---RWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLA 157 (620)
T ss_pred HHhcCCCccEEEEeccccCCHHHHHHHHHHH-hhChh-cC---CceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEE
Confidence 22356677776667888888877654 33333 23 5899999999999999999999999999999999999
Q ss_pred eeccccCchhhhccceEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCchHH
Q 017884 178 CNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEA 257 (364)
Q Consensus 178 ~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~a~~~l~~~~~~~~~i~~~~ 257 (364)
++.+.++.++|+|||..++|.+++.+++..++..++.++++.++++++..+++.++|++|.|+++++++..+.+.||.++
T Consensus 158 t~~~~~llpTIrSRc~~~~f~~l~~~ei~~~L~~ia~kegi~is~~al~~La~~s~G~lr~A~~lLeklsL~~~~It~e~ 237 (620)
T PRK14948 158 TTDPQRVLPTIISRCQRFDFRRIPLEAMVQHLSEIAEKESIEIEPEALTLVAQRSQGGLRDAESLLDQLSLLPGPITPEA 237 (620)
T ss_pred eCChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhccCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988888999999
Q ss_pred HHHhcCCCChHHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc-----------------------
Q 017884 258 VYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKI----------------------- 314 (364)
Q Consensus 258 v~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~~~~----------------------- 314 (364)
|..+++......++++++++..++...++..+.++. ..|.++..++..+.++++++
T Consensus 238 V~~lvg~~~e~~i~~Ll~ai~~~d~~~al~~~~~Ll-~~g~~p~~iL~~L~~~~RDLL~~K~~~~~~~l~~i~~d~~~~l 316 (620)
T PRK14948 238 VWDLLGAVPEQDLLNLLKALASNDPESLLDSCRQLL-DRGREPLAILQGLAAFYRDLLLAKTAPNRPDLVAVSQQTWDEL 316 (620)
T ss_pred HHHHhcCCCHHHHHHHHHHHHCCCHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHhcccchhhhhcCHHHHHHH
Confidence 999999888889999999999999999999999988 88888888888887777654
Q ss_pred -----CCChHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHH
Q 017884 315 -----KMPSDVRVRLMNDLADIEYRLSFGCNDKLQLGSIISTFTQ 354 (364)
Q Consensus 315 -----~~~~~~~~~i~~~l~~~~~~l~~~~~~~~~l~~l~~~l~~ 354 (364)
.++...+..+++.+.+++++++.+.++++.+|.++.+++.
T Consensus 317 ~~~A~~~s~~~L~~~i~~L~eae~~LK~n~nprL~LE~lLl~l~~ 361 (620)
T PRK14948 317 CKLAKQINLERILQWQQHLKGSEYQLKNSTQPRLWLEVTLLGLLP 361 (620)
T ss_pred HHHHhhCCHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHhhc
Confidence 2345567788999999999999999999999999999975
No 41
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=2.5e-40 Score=313.76 Aligned_cols=269 Identities=22% Similarity=0.365 Sum_probs=243.8
Q ss_pred CCChhhccCCCCCcchhccHHHHHHHHHHHhcCCCCc-EEEeCCCCccHHHHHHHHHHHHcCCCC---------------
Q 017884 40 ASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPH-LLLYGPPGTGKTSTILAVARKLYGAQY--------------- 103 (364)
Q Consensus 40 ~~~~~~~~~p~~~~~~vg~~~~~~~l~~~~~~~~~~~-lll~G~~G~GKt~la~~l~~~l~~~~~--------------- 103 (364)
..+|.+||||.+|++++||+.+++.|.+++..++.+| +||+||+|+|||++|+.+++.+.|.++
T Consensus 3 ~~~~~~KyRP~~F~dIIGQe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr~i 82 (605)
T PRK05896 3 EITFYRKYRPHNFKQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCESI 82 (605)
T ss_pred chhHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHH
Confidence 3689999999999999999999999999999999898 899999999999999999999988543
Q ss_pred ----CCcEEEEeCCCCCChHHHHHHHHHHHhcCccccCCccceEEEEEeCCCCCCHHHHHHHHHHHHHhccCccEEEEee
Q 017884 104 ----HNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICN 179 (364)
Q Consensus 104 ----~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~ 179 (364)
+.+++++++....+.+.++..+..+. ..|+ ++ +++|++|||+|.|+..++++|+++|++|+.++++|++|+
T Consensus 83 ~~~~h~DiieIdaas~igVd~IReIi~~~~-~~P~-~~---~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt 157 (605)
T PRK05896 83 NTNQSVDIVELDAASNNGVDEIRNIIDNIN-YLPT-TF---KYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATT 157 (605)
T ss_pred HcCCCCceEEeccccccCHHHHHHHHHHHH-hchh-hC---CcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECC
Confidence 24577777766678888888665544 3343 33 489999999999999999999999999999999999999
Q ss_pred ccccCchhhhccceEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcc-cCchHHH
Q 017884 180 QVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQ-QITEEAV 258 (364)
Q Consensus 180 ~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~a~~~l~~~~~~~~-~i~~~~v 258 (364)
.+.++.++++|||++++|.+++.+++..|+..++.++|+.+++++++.++..++|++|.|++.++.+..+.+ .|+.++|
T Consensus 158 ~~~KLl~TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~Is~eal~~La~lS~GdlR~AlnlLekL~~y~~~~It~e~V 237 (605)
T PRK05896 158 EFQKIPLTIISRCQRYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIADLADGSLRDGLSILDQLSTFKNSEIDIEDI 237 (605)
T ss_pred ChHhhhHHHHhhhhhcccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHHhhcCCCCCHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999877654 4999999
Q ss_pred HHhcCCCChHHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc
Q 017884 259 YLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKI 314 (364)
Q Consensus 259 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~~~~ 314 (364)
..+++......++.+++++..++...++.++.++. ..|.++..++..+..++|.+
T Consensus 238 ~ellg~~~~~~Vf~Ll~AI~~kd~~~al~~l~~Ll-~~ge~~~~il~~L~~~~RDl 292 (605)
T PRK05896 238 NKTFGLVDNNKKINLIELIQKNDIEELRNLINELE-SKGINFEAFCRDLINLLIDL 292 (605)
T ss_pred HHHhccCCHHHHHHHHHHHHCCCHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHH
Confidence 99999888888999999999999999999999998 89999999999999988865
No 42
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=4.1e-40 Score=315.20 Aligned_cols=311 Identities=19% Similarity=0.311 Sum_probs=274.9
Q ss_pred CCChhhccCCCCCcchhccHHHHHHHHHHHhcCCCCc-EEEeCCCCccHHHHHHHHHHHHcCCC----------------
Q 017884 40 ASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPH-LLLYGPPGTGKTSTILAVARKLYGAQ---------------- 102 (364)
Q Consensus 40 ~~~~~~~~~p~~~~~~vg~~~~~~~l~~~~~~~~~~~-lll~G~~G~GKt~la~~l~~~l~~~~---------------- 102 (364)
..+|.+||||.+|++++||+++++.|.+++..++.+| ++|+||+|+|||++|+.+++.++|..
T Consensus 3 ~~~l~~k~rP~~f~divGq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i 82 (527)
T PRK14969 3 YQVLARKWRPKSFSELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEI 82 (527)
T ss_pred cHHHHHHhCCCcHHHhcCcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHH
Confidence 4679999999999999999999999999999999999 69999999999999999999998842
Q ss_pred ---CCCcEEEEeCCCCCChHHHHHHHHHHHhcCccccCCccceEEEEEeCCCCCCHHHHHHHHHHHHHhccCccEEEEee
Q 017884 103 ---YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICN 179 (364)
Q Consensus 103 ---~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~ 179 (364)
...+++++++....+++.+++.+... ...|. .+ +++|+||||+|.|+..++++|++++++++.++.||++|+
T Consensus 83 ~~~~~~d~~ei~~~~~~~vd~ir~l~~~~-~~~p~-~~---~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t~ 157 (527)
T PRK14969 83 DSGRFVDLIEVDAASNTQVDAMRELLDNA-QYAPT-RG---RFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATT 157 (527)
T ss_pred hcCCCCceeEeeccccCCHHHHHHHHHHH-hhCcc-cC---CceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEeC
Confidence 12356778777667888888766654 33333 23 589999999999999999999999999999999999999
Q ss_pred ccccCchhhhccceEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhc-ccCchHHH
Q 017884 180 QVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMAS-QQITEEAV 258 (364)
Q Consensus 180 ~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~a~~~l~~~~~~~-~~i~~~~v 258 (364)
++.++.++++|||..++|.+++.+++.+++..+++++|+.++++++..|++.++|++|.++++++++..+. +.|+.++|
T Consensus 158 d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi~~~~~al~~la~~s~Gslr~al~lldqai~~~~~~I~~~~v 237 (527)
T PRK14969 158 DPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLARAAAGSMRDALSLLDQAIAYGGGTVNESEV 237 (527)
T ss_pred ChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCcCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998776554 68999999
Q ss_pred HHhcCCCChHHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc------------------------
Q 017884 259 YLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKI------------------------ 314 (364)
Q Consensus 259 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~~~~------------------------ 314 (364)
..+++......++++++++..++...++..+.++. ..|.+...++..+...++++
T Consensus 238 ~~~~~~~~~~~i~~ll~al~~~~~~~~l~~~~~l~-~~~~~~~~~l~~l~~~~rd~~~~~~~~~~~~~~~~~~~~~~~~a 316 (527)
T PRK14969 238 RAMLGAIDQDYLFALLEALLAQDGAALLAIADAME-ERSLSFDAALQDLAALLHRLAIAQTVPDSIADDLPERDRLLDLA 316 (527)
T ss_pred HHHHCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCCCHHHHHHHHHHHHHHHHHhhcCcccccccchHHHHHHHHH
Confidence 99999988889999999999999999999999988 88888888888877777654
Q ss_pred -CCChHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Q 017884 315 -KMPSDVRVRLMNDLADIEYRLSFGCNDKLQLGSIISTFTQAR 356 (364)
Q Consensus 315 -~~~~~~~~~i~~~l~~~~~~l~~~~~~~~~l~~l~~~l~~~~ 356 (364)
.++.+.+..+++.+.+....+....++++.+|-.+.+++...
T Consensus 317 ~~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~r~~~~~ 359 (527)
T PRK14969 317 KRLSPEDIQLYYQIALHGRRDLGLAPDEYAGFTMTLLRMLAFR 359 (527)
T ss_pred HcCCHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHhccC
Confidence 345666778888999999999999999999999999887543
No 43
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=100.00 E-value=1.6e-40 Score=284.45 Aligned_cols=333 Identities=50% Similarity=0.643 Sum_probs=303.4
Q ss_pred CCCCCCCCCCChhhccCCCCCcchhccHHHHHHHHHHHhcCCCCcEEEeCCCCccHHHHHHHHHHHHcC-CCCCCcEEEE
Q 017884 32 SGTPPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYG-AQYHNMILEL 110 (364)
Q Consensus 32 ~~~~~~~~~~~~~~~~~p~~~~~~vg~~~~~~~l~~~~~~~~~~~lll~G~~G~GKt~la~~l~~~l~~-~~~~~~~~~~ 110 (364)
..++......||.++|||.+++++++|++++..+.+....++.||+|+|||||+|||+.+.+.++.+++ .++...+.++
T Consensus 20 ~~p~~~~~~~pwvekyrP~~l~dv~~~~ei~st~~~~~~~~~lPh~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~lel 99 (360)
T KOG0990|consen 20 YIPQSPQYPQPWVEKYRPPFLGIVIKQEPIWSTENRYSGMPGLPHLLFYGPPGTGKTSTILANARDFYSPHPTTSMLLEL 99 (360)
T ss_pred CCCCCcccCCCCccCCCCchhhhHhcCCchhhHHHHhccCCCCCcccccCCCCCCCCCchhhhhhhhcCCCCchhHHHHh
Confidence 456667778999999999999999999999999999999999999999999999999999999999998 4555668889
Q ss_pred eCCCCCChHHHHHHHHHHHhcCcc-ccCCccceEEEEEeCCCCCCHHHHHHHHHHHHHhccCccEEEEeeccccCchhhh
Q 017884 111 NASDDRGIDVVRQQIQDFASTQSF-SFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQ 189 (364)
Q Consensus 111 ~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~l~~~l~ 189 (364)
++++.++++.+++.+..++.+.++ .|+.....++||+||+|.|+.++|++|++.++.+..+++|++++|++.++.++++
T Consensus 100 naSd~rgid~vr~qi~~fast~~~~~fst~~~fKlvILDEADaMT~~AQnALRRviek~t~n~rF~ii~n~~~ki~pa~q 179 (360)
T KOG0990|consen 100 NASDDRGIDPVRQQIHLFASTQQPTTYSTHAAFKLVILDEADAMTRDAQNALRRVIEKYTANTRFATISNPPQKIHPAQQ 179 (360)
T ss_pred hccCccCCcchHHHHHHHHhhccceeccccCceeEEEecchhHhhHHHHHHHHHHHHHhccceEEEEeccChhhcCchhh
Confidence 999999999999999888776542 2333346899999999999999999999999999999999999999999999999
Q ss_pred ccceEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCc-----hHHHHHhcCC
Q 017884 190 SRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQIT-----EEAVYLCTGN 264 (364)
Q Consensus 190 sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~a~~~l~~~~~~~~~i~-----~~~v~~~~~~ 264 (364)
+||..++|.|++..+....+..+++.+....+++....++..+.||+|.++|.|+....+...++ .+.++...+.
T Consensus 180 sRctrfrf~pl~~~~~~~r~shi~e~e~~~~~~~~~~a~~r~s~gDmr~a~n~Lqs~~~~~~~~~e~~~~~~~vy~c~g~ 259 (360)
T KOG0990|consen 180 SRCTRFRFAPLTMAQQTERQSHIRESEQKETNPEGYSALGRLSVGDMRVALNYLQSILKKVMERKELNNPNDLVYQCKGA 259 (360)
T ss_pred cccccCCCCCCChhhhhhHHHHHHhcchhhcCHHHHHHHHHHhHHHHHHHHHHHHHHHHHhCCCCCCCCchhhHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999999999888765444 4459999999
Q ss_pred CChHHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhcCCChHHH
Q 017884 265 PLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDKLQ 344 (364)
Q Consensus 265 ~~~~~~~~l~~~l~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~i~~~l~~~~~~l~~~~~~~~~ 344 (364)
....++.++++++++..+..+...+..+....|+...+++..+...+....+.......|+..++++++++..|.+++++
T Consensus 260 p~~~dI~~I~~~il~~~~~~~~~~is~lk~~~gla~~d~i~~l~~~~~~~~~~~~~~~~I~~~l~~Ie~~ls~g~~~~~q 339 (360)
T KOG0990|consen 260 PQPSDIRQIIEKRMNGEDIELMLDDSELKKPKGLARQDRRAELEQRFAIVISKTPVEGHILYQLADIEERLSKGCMQKEQ 339 (360)
T ss_pred CChhHHHHHHHHHhcCchHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHhcchHHHHHHHHhHHHHHHHHhcchhHHHH
Confidence 99999999999999999988888888888888999999999999999888887788899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcC
Q 017884 345 LGSIISTFTQARSAIVAAAK 364 (364)
Q Consensus 345 l~~l~~~l~~~~~~~~~~~~ 364 (364)
+.++|+.+...++++.+.++
T Consensus 340 l~aii~~~~~~~~~~~~~~~ 359 (360)
T KOG0990|consen 340 LKAIIKNFAAELKALAWKID 359 (360)
T ss_pred HHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999888764
No 44
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=100.00 E-value=1.1e-35 Score=271.47 Aligned_cols=299 Identities=27% Similarity=0.400 Sum_probs=251.0
Q ss_pred CCCCCCChhhccCCCCCcchhccHHHHHHHHHHHhcCCCCcE-EEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCC
Q 017884 36 PDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHL-LLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASD 114 (364)
Q Consensus 36 ~~~~~~~~~~~~~p~~~~~~vg~~~~~~~l~~~~~~~~~~~l-ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~ 114 (364)
-.++..+|++||||.+|++++||+++...++.++..+..||+ +++||+|+|||++++++++.+ ...+.++++..
T Consensus 4 ~~~~~~~w~~kyrP~~~~~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~-----~~~~~~i~~~~ 78 (316)
T PHA02544 4 VNPNEFMWEQKYRPSTIDECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEV-----GAEVLFVNGSD 78 (316)
T ss_pred cCCCCCcceeccCCCcHHHhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHh-----CccceEeccCc
Confidence 456789999999999999999999999999999999998885 669999999999999999987 34556777776
Q ss_pred CCChHHHHHHHHHHHhcCccccCCccceEEEEEeCCCCC-CHHHHHHHHHHHHHhccCccEEEEeeccccCchhhhccce
Q 017884 115 DRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAM-TKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCT 193 (364)
Q Consensus 115 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l-~~~~~~~L~~~le~~~~~~~~Il~~~~~~~l~~~l~sr~~ 193 (364)
...+.+++.+..+....++ .+ ++++|+|||+|.+ ....++.|..++++++.++.+|++++...++.+++++||.
T Consensus 79 -~~~~~i~~~l~~~~~~~~~-~~---~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~~ 153 (316)
T PHA02544 79 -CRIDFVRNRLTRFASTVSL-TG---GGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRCR 153 (316)
T ss_pred -ccHHHHHHHHHHHHHhhcc-cC---CCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhce
Confidence 3356666667666665543 22 4789999999999 6777888999999999999999999999999999999999
Q ss_pred EEEecCCChHHHHHHHH-------HHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCchHHHHHhcCCCC
Q 017884 194 RFRFAPLEPVHVTERLK-------HVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPL 266 (364)
Q Consensus 194 ~i~~~~~~~~~~~~~l~-------~~~~~~~~~i~~~~~~~l~~~~~g~~r~a~~~l~~~~~~~~~i~~~~v~~~~~~~~ 266 (364)
.+.|++|+.++...++. .++.++|+.++++++..+++.+.||.|.+++.++.... .+.++..++..+.
T Consensus 154 ~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~i~~~al~~l~~~~~~d~r~~l~~l~~~~~-~~~i~~~~l~~~~---- 228 (316)
T PHA02544 154 VIDFGVPTKEEQIEMMKQMIVRCKGILEAEGVEVDMKVLAALVKKNFPDFRRTINELQRYAS-TGKIDAGILSEVT---- 228 (316)
T ss_pred EEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHc-cCCCCHHHHHHhh----
Confidence 99999999888765543 44556799999999999999999999999999997764 4678888877654
Q ss_pred hHHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhcCCChHHHHH
Q 017884 267 PKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDKLQLG 346 (364)
Q Consensus 267 ~~~~~~l~~~l~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~i~~~l~~~~~~l~~~~~~~~~l~ 346 (364)
...++.+++++...+...... +.. ..+.++.+++..++..+.. .+....+.++++.+++.+..+..|.|+.++++
T Consensus 229 ~~~~~~l~~~l~~~d~~~~~~-~~~---~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~le 303 (316)
T PHA02544 229 NSDIDDVVEALKAKDFKAVRA-LAP---NYANDYASFVGKLYDELYP-QVTPPSIIRLIEIIGENNQYHGFAADQEIHLL 303 (316)
T ss_pred HHHHHHHHHHHHcCCHHHHHH-HHH---HhccCHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 567888999999888777665 222 4467888999998777766 56788899999999999999999999999999
Q ss_pred HHHHHHHH
Q 017884 347 SIISTFTQ 354 (364)
Q Consensus 347 ~l~~~l~~ 354 (364)
+++..+|.
T Consensus 304 ~~l~~~~~ 311 (316)
T PHA02544 304 YLLTQLML 311 (316)
T ss_pred HHHHHHHH
Confidence 99999974
No 45
>PRK04132 replication factor C small subunit; Provisional
Probab=100.00 E-value=1.5e-35 Score=291.86 Aligned_cols=275 Identities=39% Similarity=0.684 Sum_probs=254.8
Q ss_pred EEEeC--CCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCCCChHHHHHHHHHHHhcCccccCCccceEEEEEeCCCCCC
Q 017884 77 LLLYG--PPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMT 154 (364)
Q Consensus 77 lll~G--~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~ 154 (364)
-+..| |.+.||||+|+++++.+++.++...++++|+++..+.+.+++.+..++...+. .+. +++|+||||+|.|+
T Consensus 567 ~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rgid~IR~iIk~~a~~~~~-~~~--~~KVvIIDEaD~Lt 643 (846)
T PRK04132 567 NFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERGINVIREKVKEFARTKPI-GGA--SFKIIFLDEADALT 643 (846)
T ss_pred hhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcccHHHHHHHHHHHHhcCCc-CCC--CCEEEEEECcccCC
Confidence 35567 77889999999999999888788899999999988999999999988876554 221 47999999999999
Q ss_pred HHHHHHHHHHHHHhccCccEEEEeeccccCchhhhccceEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Q 017884 155 KDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNG 234 (364)
Q Consensus 155 ~~~~~~L~~~le~~~~~~~~Il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g 234 (364)
..+|++|+++||+|+.+++||++||++.++.++|+|||+.+.|++++.+++...|..++.++|+.++++++..++..++|
T Consensus 644 ~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~i~~e~L~~Ia~~s~G 723 (846)
T PRK04132 644 QDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEG 723 (846)
T ss_pred HHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhcccCchHHHHHhcCCCChHHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc
Q 017884 235 DMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKI 314 (364)
Q Consensus 235 ~~r~a~~~l~~~~~~~~~i~~~~v~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~~~~ 314 (364)
|+|.|++.||.++.....||.++|..+.+......+++++..+..+++..++..+.+++...|.++.+++..++..+...
T Consensus 724 DlR~AIn~Lq~~~~~~~~It~~~V~~~~~~~~~~~I~~il~~~l~~~~~~ar~~l~ell~~~G~~~~~iL~~l~~~l~~~ 803 (846)
T PRK04132 724 DMRRAINILQAAAALDDKITDENVFLVASRARPEDIREMMLLALKGNFLKAREKLREILLKQGLSGEDVLVQMHREVFNL 803 (846)
T ss_pred CHHHHHHHHHHHHHhcCCCCHHHHHHHhCCCCHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhc
Confidence 99999999998877667899999999999988889999999999999999999999988789999999999999999887
Q ss_pred CCChHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHH
Q 017884 315 KMPSDVRVRLMNDLADIEYRLSFGCNDKLQLGSIISTFTQ 354 (364)
Q Consensus 315 ~~~~~~~~~i~~~l~~~~~~l~~~~~~~~~l~~l~~~l~~ 354 (364)
.+++.....+++.++++++++..|.++.+||++|+++++.
T Consensus 804 ~i~~~~k~~ll~~lae~e~rl~~G~n~~iqL~a~la~~~~ 843 (846)
T PRK04132 804 PIDEPKKVELADKIGEYNFRLVEGANEMIQLEALLAQFTL 843 (846)
T ss_pred CCCHHHHHHHHHHHHHHhHHHHCCCCHHHHHHHHHHHHHh
Confidence 7888899999999999999999999999999999999975
No 46
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=100.00 E-value=6.5e-34 Score=251.47 Aligned_cols=297 Identities=24% Similarity=0.344 Sum_probs=236.6
Q ss_pred CChhhccCCCCCcchhccHHHHH---HHHHHHhcCCCCcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCCCC
Q 017884 41 SPWVEKYRPQSLADVAAHRDIVD---TIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRG 117 (364)
Q Consensus 41 ~~~~~~~~p~~~~~~vg~~~~~~---~l~~~~~~~~~~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~ 117 (364)
.|++++.||.+++|++||++++. .|.++++.+..++++||||||+||||+|+.+++.. ...|..+++.. .+
T Consensus 12 ~PLA~rmRP~~lde~vGQ~HLlg~~~~lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~-----~~~f~~~sAv~-~g 85 (436)
T COG2256 12 MPLAERLRPKSLDEVVGQEHLLGEGKPLRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTT-----NAAFEALSAVT-SG 85 (436)
T ss_pred cChHHHhCCCCHHHhcChHhhhCCCchHHHHHhcCCCceeEEECCCCCCHHHHHHHHHHhh-----CCceEEecccc-cc
Confidence 59999999999999999999995 79999999999999999999999999999999986 56788888776 47
Q ss_pred hHHHHHHHHHHHhcCccccCCccceEEEEEeCCCCCCHHHHHHHHHHHHHhccCccEEEEe--eccccCchhhhccceEE
Q 017884 118 IDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALIC--NQVNKIIPALQSRCTRF 195 (364)
Q Consensus 118 ~~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~--~~~~~l~~~l~sr~~~i 195 (364)
+.+++..++....... . +.+.|++|||+|++++..|+.|+..+|+. ...+|.+| |+...+.++|+|||+++
T Consensus 86 vkdlr~i~e~a~~~~~--~---gr~tiLflDEIHRfnK~QQD~lLp~vE~G--~iilIGATTENPsF~ln~ALlSR~~vf 158 (436)
T COG2256 86 VKDLREIIEEARKNRL--L---GRRTILFLDEIHRFNKAQQDALLPHVENG--TIILIGATTENPSFELNPALLSRARVF 158 (436)
T ss_pred HHHHHHHHHHHHHHHh--c---CCceEEEEehhhhcChhhhhhhhhhhcCC--eEEEEeccCCCCCeeecHHHhhhhhee
Confidence 7888888877644322 1 24789999999999999999999999953 34444444 45568999999999999
Q ss_pred EecCCChHHHHHHHHHHHH--HcCCC-----CCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcc---cCchHHHHHhcCC-
Q 017884 196 RFAPLEPVHVTERLKHVIE--AEGLD-----VTEGGLAALVRLCNGDMRKALNILQSTHMASQ---QITEEAVYLCTGN- 264 (364)
Q Consensus 196 ~~~~~~~~~~~~~l~~~~~--~~~~~-----i~~~~~~~l~~~~~g~~r~a~~~l~~~~~~~~---~i~~~~v~~~~~~- 264 (364)
.|+|++.+++...+.+-+. ..++. +++++.+.|+..++||.|.++|.|+......+ .++.+.+++++..
T Consensus 159 ~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~aLN~LE~~~~~~~~~~~~~~~~l~~~l~~~ 238 (436)
T COG2256 159 ELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARRALNLLELAALSAEPDEVLILELLEEILQRR 238 (436)
T ss_pred eeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHHHHHHHHHHHHhcCCCcccCHHHHHHHHhhh
Confidence 9999999999999998443 33444 78999999999999999999999998887553 3447777776533
Q ss_pred ---------CChHHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH-hcCCChHHHHHHHHHHHHHHHH
Q 017884 265 ---------PLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVF-KIKMPSDVRVRLMNDLADIEYR 334 (364)
Q Consensus 265 ---------~~~~~~~~l~~~l~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~~-~~~~~~~~~~~i~~~l~~~~~~ 334 (364)
..++.+..+.+++.+.|..+++.++.+|+ +.|.+|.-|-+.+..... .+++-+..-..+.....+.-.+
T Consensus 239 ~~~~Dk~gD~hYdliSA~hKSvRGSD~dAALyylARmi-~~GeDp~yiARRlv~~AsEDIGlAdP~Al~~a~aa~da~~~ 317 (436)
T COG2256 239 SARFDKDGDAHYDLISALHKSVRGSDPDAALYYLARMI-EAGEDPLYIARRLVRIASEDIGLADPNALQVAVAALDAVER 317 (436)
T ss_pred hhccCCCcchHHHHHHHHHHhhccCCcCHHHHHHHHHH-hcCCCHHHHHHHHHHHHHhhccCCChhHHHHHHHHHHHHHH
Confidence 45677888999999999999999999999 999999999988877665 3454444444444443343333
Q ss_pred HhcCC-ChHHHHHHHHHHHH
Q 017884 335 LSFGC-NDKLQLGSIISTFT 353 (364)
Q Consensus 335 l~~~~-~~~~~l~~l~~~l~ 353 (364)
-|. .-++.|-..+..||
T Consensus 318 --lG~PE~~i~LAqavvyLA 335 (436)
T COG2256 318 --LGSPEARIALAQAVVYLA 335 (436)
T ss_pred --hCCchHHHHHHHHHHHHH
Confidence 343 33666777776665
No 47
>PRK04195 replication factor C large subunit; Provisional
Probab=100.00 E-value=1.3e-33 Score=270.12 Aligned_cols=297 Identities=26% Similarity=0.353 Sum_probs=240.8
Q ss_pred CChhhccCCCCCcchhccHHHHHHHHHHHhc---CC-CCcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCCC
Q 017884 41 SPWVEKYRPQSLADVAAHRDIVDTIDRLTSE---NR-LPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDR 116 (364)
Q Consensus 41 ~~~~~~~~p~~~~~~vg~~~~~~~l~~~~~~---~~-~~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~ 116 (364)
.+|++||||.+|++++|++.++..|..|+.. +. .++++|+||||+|||++|+++++++ ...++++++++..
T Consensus 2 ~~W~eKyrP~~l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el-----~~~~ielnasd~r 76 (482)
T PRK04195 2 MPWVEKYRPKTLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDY-----GWEVIELNASDQR 76 (482)
T ss_pred CCchhhcCCCCHHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHc-----CCCEEEEcccccc
Confidence 4899999999999999999999999999874 33 4459999999999999999999997 4678899988877
Q ss_pred ChHHHHHHHHHHHhcCccccCCccceEEEEEeCCCCCCH----HHHHHHHHHHHHhccCccEEEEeeccccCch-hhhcc
Q 017884 117 GIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTK----DAQFALRRVIEKYTKNTRFALICNQVNKIIP-ALQSR 191 (364)
Q Consensus 117 ~~~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~~----~~~~~L~~~le~~~~~~~~Il~~~~~~~l~~-~l~sr 191 (364)
..+.+...+.......++ ++. .+++|+|||+|.+.. ...+.|+++++. ..+.+|+++|.+..+.. ++++|
T Consensus 77 ~~~~i~~~i~~~~~~~sl-~~~--~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~--~~~~iIli~n~~~~~~~k~Lrsr 151 (482)
T PRK04195 77 TADVIERVAGEAATSGSL-FGA--RRKLILLDEVDGIHGNEDRGGARAILELIKK--AKQPIILTANDPYDPSLRELRNA 151 (482)
T ss_pred cHHHHHHHHHHhhccCcc-cCC--CCeEEEEecCcccccccchhHHHHHHHHHHc--CCCCEEEeccCccccchhhHhcc
Confidence 777777777766655554 432 488999999999976 567889999984 35678899988887776 89999
Q ss_pred ceEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCchHHHHHhcCCCChHHHH
Q 017884 192 CTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIE 271 (364)
Q Consensus 192 ~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~a~~~l~~~~~~~~~i~~~~v~~~~~~~~~~~~~ 271 (364)
|..+.|++|+..++..++..++..+|+.+++++++.|++.++||+|.+++.|+..+...+.++.+++..+.......++|
T Consensus 152 ~~~I~f~~~~~~~i~~~L~~i~~~egi~i~~eaL~~Ia~~s~GDlR~ain~Lq~~a~~~~~it~~~v~~~~~~d~~~~if 231 (482)
T PRK04195 152 CLMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAERSGGDLRSAINDLQAIAEGYGKLTLEDVKTLGRRDREESIF 231 (482)
T ss_pred ceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCcHHHHHHhhcCCCCCCHH
Confidence 99999999999999999999999999999999999999999999999999999976556789999999888777778999
Q ss_pred HHHHHHHh-ccHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH---hcCCChHHHHHH
Q 017884 272 QISYWLLN-ESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRL---SFGCNDKLQLGS 347 (364)
Q Consensus 272 ~l~~~l~~-~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~i~~~l~~~~~~l---~~~~~~~~~l~~ 347 (364)
+++..++. ++...++..+. ....++..++..+...+...-.+.+.+.++++.+++.|..+ ..+.+ .+|+.
T Consensus 232 ~~l~~i~~~k~~~~a~~~~~----~~~~~~~~i~~~l~en~~~~~~~~~~~~~a~~~ls~ad~~~~~~~~~~~--~~l~~ 305 (482)
T PRK04195 232 DALDAVFKARNADQALEASY----DVDEDPDDLIEWIDENIPKEYDDPEDIARAYDALSRADIFLGRVKRTQN--YDLWR 305 (482)
T ss_pred HHHHHHHCCCCHHHHHHHHH----cccCCHHHHHHHHHhccccccCCHHHHHHHHHHHhHHHHHHHHHHhcCC--cchHH
Confidence 99999987 77776665443 34578888888877776542123467777788887776644 44444 66666
Q ss_pred HHHHHH
Q 017884 348 IISTFT 353 (364)
Q Consensus 348 l~~~l~ 353 (364)
+...++
T Consensus 306 ~~~~~m 311 (482)
T PRK04195 306 YASDLM 311 (482)
T ss_pred HHHHHh
Confidence 665553
No 48
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=100.00 E-value=2.7e-31 Score=241.21 Aligned_cols=278 Identities=18% Similarity=0.300 Sum_probs=215.6
Q ss_pred CCcchhccHHHHHHHHHHHhcCCCCc-EEEeCCCCccHHHHHHHHHHHHcCCC---CCCcEEEEeC--CCCCChHHHHHH
Q 017884 51 SLADVAAHRDIVDTIDRLTSENRLPH-LLLYGPPGTGKTSTILAVARKLYGAQ---YHNMILELNA--SDDRGIDVVRQQ 124 (364)
Q Consensus 51 ~~~~~vg~~~~~~~l~~~~~~~~~~~-lll~G~~G~GKt~la~~l~~~l~~~~---~~~~~~~~~~--~~~~~~~~~~~~ 124 (364)
+|++++||+.+++.|..++..++.+| ++|+||+|+|||++|+.+++.+.|.. .+.++..+.. ....+.+.+++.
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~ir~~ 81 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDDIRNI 81 (313)
T ss_pred ChhhccCcHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHHHHHH
Confidence 58999999999999999999999999 69999999999999999999998853 2344545543 233566788876
Q ss_pred HHHHHhcCccccCCccceEEEEEeCCCCCCHHHHHHHHHHHHHhccCccEEEEeeccccCchhhhccceEEEecCCChHH
Q 017884 125 IQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVH 204 (364)
Q Consensus 125 i~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~l~~~l~sr~~~i~~~~~~~~~ 204 (364)
+... ...|+ .+ +++|+|||++|.|+..++++|++++|+||+++.+|++|+.++++.++++|||+.+.|.++++++
T Consensus 82 ~~~~-~~~p~-~~---~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SRc~~~~~~~~~~~~ 156 (313)
T PRK05564 82 IEEV-NKKPY-EG---DKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRCQIYKLNRLSKEE 156 (313)
T ss_pred HHHH-hcCcc-cC---CceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhhceeeeCCCcCHHH
Confidence 6554 34443 33 5999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCchHHHHHhcCCCChHHHHHHHHHHHhccHHH
Q 017884 205 VTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESFAD 284 (364)
Q Consensus 205 ~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~a~~~l~~~~~~~~~i~~~~v~~~~~~~~~~~~~~l~~~l~~~~~~~ 284 (364)
+..|+.+... .++++.+..++.+++|+++.|...+...... . ....++++++.+..++...
T Consensus 157 ~~~~l~~~~~----~~~~~~~~~l~~~~~g~~~~a~~~~~~~~~~-------~--------~~~~~~~~~~~l~~~~~~~ 217 (313)
T PRK05564 157 IEKFISYKYN----DIKEEEKKSAIAFSDGIPGKVEKFIEDDSLK-------N--------IRNMSLEILKDIKKSNINI 217 (313)
T ss_pred HHHHHHHHhc----CCCHHHHHHHHHHcCCCHHHHHHHhcccHHH-------H--------HHHHHHHHHHHHHcCCHHH
Confidence 9999986542 5788889999999999999988765322110 0 0124455555555555555
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhc--------------------------CCChHHHHHHHHHHHHHHHHHhcC
Q 017884 285 SFKRISEMKMRKGLALVDIVREVTMFVFKI--------------------------KMPSDVRVRLMNDLADIEYRLSFG 338 (364)
Q Consensus 285 ~~~~l~~l~~~~~~~~~~i~~~l~~~~~~~--------------------------~~~~~~~~~i~~~l~~~~~~l~~~ 338 (364)
++..+..+. ..+..+..++..+.+++++. .++...+..+++.+.++++.++++
T Consensus 218 ~l~~~~~l~-~~~~~~~~~l~~l~~~~rdll~~k~~~~~~~~~~~~~~~~i~~~a~~~s~~~L~~~~~~l~~~~~~l~~n 296 (313)
T PRK05564 218 LLKYENFLI-KYKENWEEILTCILSYIRDSLLYKETGNEELIINIDKIEDIKHISEKFSYKKLNKMIEIINDTRDNLSSN 296 (313)
T ss_pred HHHHHHHHH-HcCccHHHHHHHHHHHHHHHHHHhccCchhhhcChhHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHc
Confidence 555555544 44444444444444444322 356667888999999999999999
Q ss_pred CChHHHHHHHHHHHH
Q 017884 339 CNDKLQLGSIISTFT 353 (364)
Q Consensus 339 ~~~~~~l~~l~~~l~ 353 (364)
.|+.+.++.++.++.
T Consensus 297 ~n~~l~le~lll~~~ 311 (313)
T PRK05564 297 VNPTLVFDSMLIKMQ 311 (313)
T ss_pred CCccHHHHHHHHhhh
Confidence 999999999999875
No 49
>PRK13342 recombination factor protein RarA; Reviewed
Probab=100.00 E-value=4.4e-31 Score=248.16 Aligned_cols=298 Identities=24% Similarity=0.367 Sum_probs=231.8
Q ss_pred ChhhccCCCCCcchhccHHHHHH---HHHHHhcCCCCcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCCCCh
Q 017884 42 PWVEKYRPQSLADVAAHRDIVDT---IDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGI 118 (364)
Q Consensus 42 ~~~~~~~p~~~~~~vg~~~~~~~---l~~~~~~~~~~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~ 118 (364)
||+++|||.+|++++||++++.. |..++..+..++++|+||||+|||++|+.+++.+ ...+..+++... +.
T Consensus 1 pla~~~RP~~l~d~vGq~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~-----~~~~~~l~a~~~-~~ 74 (413)
T PRK13342 1 PLAERMRPKTLDEVVGQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGAT-----DAPFEALSAVTS-GV 74 (413)
T ss_pred ChhhhhCCCCHHHhcCcHHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHh-----CCCEEEEecccc-cH
Confidence 89999999999999999999776 9999999988899999999999999999999986 456677776643 55
Q ss_pred HHHHHHHHHHHhcCccccCCccceEEEEEeCCCCCCHHHHHHHHHHHHHhccCccEEEEe--eccccCchhhhccceEEE
Q 017884 119 DVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALIC--NQVNKIIPALQSRCTRFR 196 (364)
Q Consensus 119 ~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~--~~~~~l~~~l~sr~~~i~ 196 (364)
+.++..+........ . +.+++|+|||+|.++...++.|+..+++. ...+|.++ +....+.+++++||.++.
T Consensus 75 ~~ir~ii~~~~~~~~--~---g~~~vL~IDEi~~l~~~~q~~LL~~le~~--~iilI~att~n~~~~l~~aL~SR~~~~~ 147 (413)
T PRK13342 75 KDLREVIEEARQRRS--A---GRRTILFIDEIHRFNKAQQDALLPHVEDG--TITLIGATTENPSFEVNPALLSRAQVFE 147 (413)
T ss_pred HHHHHHHHHHHHhhh--c---CCceEEEEechhhhCHHHHHHHHHHhhcC--cEEEEEeCCCChhhhccHHHhccceeeE
Confidence 666666555433211 1 14789999999999999999999999862 34444444 234478899999999999
Q ss_pred ecCCChHHHHHHHHHHHHHc--CC-CCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCchHHHHHhcCCC--------
Q 017884 197 FAPLEPVHVTERLKHVIEAE--GL-DVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNP-------- 265 (364)
Q Consensus 197 ~~~~~~~~~~~~l~~~~~~~--~~-~i~~~~~~~l~~~~~g~~r~a~~~l~~~~~~~~~i~~~~v~~~~~~~-------- 265 (364)
|++++.+++..++...+... ++ .+++++++.|++.++||+|.+++.++.+......|+.+++..+++..
T Consensus 148 ~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~Le~~~~~~~~It~~~v~~~~~~~~~~~d~~~ 227 (413)
T PRK13342 148 LKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNLLELAALGVDSITLELLEEALQKRAARYDKDG 227 (413)
T ss_pred eCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCCCHHHHHHHHhhhhhccCCCc
Confidence 99999999999999987653 44 89999999999999999999999999887666689999998877642
Q ss_pred --ChHHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH-hcCCChHHHHHHHHHHHHHHHHHhcCCChH
Q 017884 266 --LPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVF-KIKMPSDVRVRLMNDLADIEYRLSFGCNDK 342 (364)
Q Consensus 266 --~~~~~~~l~~~l~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~~-~~~~~~~~~~~i~~~l~~~~~~l~~~~~~~ 342 (364)
..+.+..+.+++.+.|...++.++..++ ..|+++..|.+.+..... ..++.+.....+.....+.-..+..- .-+
T Consensus 228 ~~~~~~isa~~ks~rgsd~~aal~~l~~~l-~~G~d~~~i~rrl~~~a~edig~a~~~~~~~~~~~~~~~~~~g~p-e~~ 305 (413)
T PRK13342 228 DEHYDLISALHKSIRGSDPDAALYYLARML-EAGEDPLFIARRLVIIASEDIGLADPNALQVAVAAADAVERIGMP-EGR 305 (413)
T ss_pred cHHHHHHHHHHHHHhcCCHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHhCCc-HHH
Confidence 2234556667777799999999999999 999999999998877774 44555555555554444444443221 336
Q ss_pred HHHHHHHHHHHH
Q 017884 343 LQLGSIISTFTQ 354 (364)
Q Consensus 343 ~~l~~l~~~l~~ 354 (364)
+.|...+..+|.
T Consensus 306 ~~l~~~~~~l~~ 317 (413)
T PRK13342 306 IALAQAVIYLAL 317 (413)
T ss_pred HHHHHHHHHHHc
Confidence 666666666663
No 50
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=100.00 E-value=9.6e-31 Score=257.04 Aligned_cols=301 Identities=21% Similarity=0.272 Sum_probs=228.4
Q ss_pred CCCChhhccCCCCCcchhccHHHHH---HHHHHHhcCCCCcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCC
Q 017884 39 KASPWVEKYRPQSLADVAAHRDIVD---TIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDD 115 (364)
Q Consensus 39 ~~~~~~~~~~p~~~~~~vg~~~~~~---~l~~~~~~~~~~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~ 115 (364)
.+.||.++|||.+|++++||++++. .|+..+..+..+|++||||||+|||++|+++++... ..++.+++..
T Consensus 14 ~~~PLaek~RP~tldd~vGQe~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~~-----~~f~~lna~~- 87 (725)
T PRK13341 14 SEAPLADRLRPRTLEEFVGQDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHTR-----AHFSSLNAVL- 87 (725)
T ss_pred ccCChHHhcCCCcHHHhcCcHHHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHhc-----Ccceeehhhh-
Confidence 4569999999999999999999985 788899999999999999999999999999999863 3445666553
Q ss_pred CChHHHHHHHHHHHhcCccccCCccceEEEEEeCCCCCCHHHHHHHHHHHHHhccCccEEEEe--eccccCchhhhccce
Q 017884 116 RGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALIC--NQVNKIIPALQSRCT 193 (364)
Q Consensus 116 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~--~~~~~l~~~l~sr~~ 193 (364)
.+...+++.+......... ++ .+.+++|||+|.++...++.|+..+++. ...+|.++ +....+.+++.|||.
T Consensus 88 ~~i~dir~~i~~a~~~l~~-~~---~~~IL~IDEIh~Ln~~qQdaLL~~lE~g--~IiLI~aTTenp~~~l~~aL~SR~~ 161 (725)
T PRK13341 88 AGVKDLRAEVDRAKERLER-HG---KRTILFIDEVHRFNKAQQDALLPWVENG--TITLIGATTENPYFEVNKALVSRSR 161 (725)
T ss_pred hhhHHHHHHHHHHHHHhhh-cC---CceEEEEeChhhCCHHHHHHHHHHhcCc--eEEEEEecCCChHhhhhhHhhcccc
Confidence 3444555555544322221 11 4679999999999999999999998852 23333333 233468899999999
Q ss_pred EEEecCCChHHHHHHHHHHHH-------HcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhc-----c--cCchHHHH
Q 017884 194 RFRFAPLEPVHVTERLKHVIE-------AEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMAS-----Q--QITEEAVY 259 (364)
Q Consensus 194 ~i~~~~~~~~~~~~~l~~~~~-------~~~~~i~~~~~~~l~~~~~g~~r~a~~~l~~~~~~~-----~--~i~~~~v~ 259 (364)
++.|+|++.+++..++...+. .+++.+++++++.|++.++||+|.+++.|+.+.... + .||.+.+.
T Consensus 162 v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R~lln~Le~a~~~~~~~~~~~i~It~~~~~ 241 (725)
T PRK13341 162 LFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDARSLLNALELAVESTPPDEDGLIDITLAIAE 241 (725)
T ss_pred ceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccCCCCceeccHHHHH
Confidence 999999999999999999887 467899999999999999999999999999865422 1 26666666
Q ss_pred Hhc----------CCCChHHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH-hcCCChHHHHHHHHHH
Q 017884 260 LCT----------GNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVF-KIKMPSDVRVRLMNDL 328 (364)
Q Consensus 260 ~~~----------~~~~~~~~~~l~~~l~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~~-~~~~~~~~~~~i~~~l 328 (364)
+.+ +...++.+..+++++.+.|..+++.++.+++ ..|++|..|.+.+..... ..++.+.....+....
T Consensus 242 e~l~~~~~~ydk~gd~hyd~Isa~~ksirgsD~daAl~~la~ml-~~Gedp~~I~Rrl~~~asEdigladp~al~~~~~~ 320 (725)
T PRK13341 242 ESIQQRAVLYDKEGDAHFDTISAFIKSLRGSDPDAALYWLARMV-EAGEDPRFIFRRMLIAASEDVGLADPQALVVVEAC 320 (725)
T ss_pred HHHHHhhhhcccCCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence 543 3457788999999999999999999999999 999999999999988887 3455445555555544
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHH
Q 017884 329 ADIEYRLSFGCNDKLQLGSIISTFT 353 (364)
Q Consensus 329 ~~~~~~l~~~~~~~~~l~~l~~~l~ 353 (364)
...-..+..- .-++.|...+..+|
T Consensus 321 ~~a~~~~g~p-E~~~~laq~~~~la 344 (725)
T PRK13341 321 AAAFERVGLP-EGLYPLAQAALYLA 344 (725)
T ss_pred HHHHHHhCCc-chhhHHHHHHHHHH
Confidence 4444444322 22333444444443
No 51
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.97 E-value=8.2e-28 Score=221.76 Aligned_cols=294 Identities=17% Similarity=0.246 Sum_probs=205.2
Q ss_pred CCcchhccHHHHHHHHHHHhcCC---------CCc-EEEeCCCCccHHHHHHHHHHHHcCCC------------------
Q 017884 51 SLADVAAHRDIVDTIDRLTSENR---------LPH-LLLYGPPGTGKTSTILAVARKLYGAQ------------------ 102 (364)
Q Consensus 51 ~~~~~vg~~~~~~~l~~~~~~~~---------~~~-lll~G~~G~GKt~la~~l~~~l~~~~------------------ 102 (364)
.|++++||+++++.|++++..++ .+| +||+||+|+|||++|+.+++.+.|..
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~ 82 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAG 82 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcC
Confidence 58999999999999999999876 778 89999999999999999999998863
Q ss_pred CCCcEEEEeCC-CCCChHHHHHHHHHHHhcCccccCCccceEEEEEeCCCCCCHHHHHHHHHHHHHhccCccEEEEeecc
Q 017884 103 YHNMILELNAS-DDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQV 181 (364)
Q Consensus 103 ~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~ 181 (364)
.+.++..+... ...+++.+++.+...... +. . ++++|++|||+|.|++..++.|+++||+|+.++.||++|+.+
T Consensus 83 ~hpD~~~i~~~~~~i~i~~iR~l~~~~~~~-p~-~---~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~a~~~ 157 (394)
T PRK07940 83 THPDVRVVAPEGLSIGVDEVRELVTIAARR-PS-T---GRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAPSP 157 (394)
T ss_pred CCCCEEEeccccccCCHHHHHHHHHHHHhC-cc-c---CCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEEECCh
Confidence 12334344332 335677888766554432 22 2 258999999999999999999999999999999999999999
Q ss_pred ccCchhhhccceEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH---------Hhccc
Q 017884 182 NKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTH---------MASQQ 252 (364)
Q Consensus 182 ~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~a~~~l~~~~---------~~~~~ 252 (364)
..+.++|+|||+.+.|++|+.+++.+|+... . .++++.+..++..++|+++.|+..+..-. .....
T Consensus 158 ~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~---~--~~~~~~a~~la~~s~G~~~~A~~l~~~~~~~~~r~~~~~~l~~ 232 (394)
T PRK07940 158 EDVLPTIRSRCRHVALRTPSVEAVAEVLVRR---D--GVDPETARRAARASQGHIGRARRLATDEEARARRAEVLNLALR 232 (394)
T ss_pred HHChHHHHhhCeEEECCCCCHHHHHHHHHHh---c--CCCHHHHHHHHHHcCCCHHHHHHHhcChHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999742 2 36788899999999999999987653211 00000
Q ss_pred C-ch---------------HHHHHhcCCCChHHHHHHHHHHH--------------------------h--------ccH
Q 017884 253 I-TE---------------EAVYLCTGNPLPKDIEQISYWLL--------------------------N--------ESF 282 (364)
Q Consensus 253 i-~~---------------~~v~~~~~~~~~~~~~~l~~~l~--------------------------~--------~~~ 282 (364)
+ .. ..+...++.........+.+.+. . ...
T Consensus 233 l~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 312 (394)
T PRK07940 233 LARVSDAVAAAEELVKAAEAEAKALTAERDEAETEELRTALGAGGTGKGPAKALRGAAGALKDLEKRQKRRATRASRDAL 312 (394)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHhccccccccccccchhHHHHHHHHHHHHhhhchhhhhhhH
Confidence 0 00 11112222222222222222210 0 011
Q ss_pred HH----HHHHHHHHHH-hcCCC----HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 017884 283 AD----SFKRISEMKM-RKGLA----LVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDKLQLGSIISTFT 353 (364)
Q Consensus 283 ~~----~~~~l~~l~~-~~~~~----~~~i~~~l~~~~~~~~~~~~~~~~i~~~l~~~~~~l~~~~~~~~~l~~l~~~l~ 353 (364)
.. ...++++++. ..|.+ ..+....+..... .++...+..+++.+.+....+..+.|+.+.+|.++.++.
T Consensus 313 ~~~l~~l~~~~rDll~~~~g~~~~~~n~d~~~~l~~~a~--~~~~~~l~~~~~~~~~a~~~l~~n~n~~L~lE~lll~l~ 390 (394)
T PRK07940 313 DRALVDLAGLYRDVLVVQLGAEVGLINPDMADRLAELAA--RSTPEGLLRRIDAVLACRERLAGNVKPLLAVEAMVAALR 390 (394)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCccccCHHHHHHHHHHHH--hCCHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 22 2233333331 11211 1112222222221 357788899999999999999999999999999999997
Q ss_pred HHH
Q 017884 354 QAR 356 (364)
Q Consensus 354 ~~~ 356 (364)
.+.
T Consensus 391 ~~~ 393 (394)
T PRK07940 391 QAL 393 (394)
T ss_pred Hhc
Confidence 664
No 52
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.97 E-value=9.5e-29 Score=215.24 Aligned_cols=289 Identities=22% Similarity=0.301 Sum_probs=227.5
Q ss_pred CCCChhhccCCCCCcchhccHHHHH---HHHHHHhcCCCCcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCC
Q 017884 39 KASPWVEKYRPQSLADVAAHRDIVD---TIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDD 115 (364)
Q Consensus 39 ~~~~~~~~~~p~~~~~~vg~~~~~~---~l~~~~~~~~~~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~ 115 (364)
...|+.++.||++++|++||++++. .|+..+++++.|.++||||||+|||++|+.++..-. .....++++++..
T Consensus 124 qh~PLaermRPktL~dyvGQ~hlv~q~gllrs~ieq~~ipSmIlWGppG~GKTtlArlia~tsk--~~SyrfvelSAt~- 200 (554)
T KOG2028|consen 124 QHKPLAERMRPKTLDDYVGQSHLVGQDGLLRSLIEQNRIPSMILWGPPGTGKTTLARLIASTSK--KHSYRFVELSATN- 200 (554)
T ss_pred ccCChhhhcCcchHHHhcchhhhcCcchHHHHHHHcCCCCceEEecCCCCchHHHHHHHHhhcC--CCceEEEEEeccc-
Confidence 4679999999999999999999987 689999999999999999999999999999998742 3345678887766
Q ss_pred CChHHHHHHHHHHHhcCccccCCccceEEEEEeCCCCCCHHHHHHHHHHHHHhccCccEEEEe--eccccCchhhhccce
Q 017884 116 RGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALIC--NQVNKIIPALQSRCT 193 (364)
Q Consensus 116 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~--~~~~~l~~~l~sr~~ 193 (364)
.+..++++.+++......+ .. .+.|++|||+|++.+..|+.|+..+|.. ...+|-+| |....+..+|.|||.
T Consensus 201 a~t~dvR~ife~aq~~~~l--~k--rkTilFiDEiHRFNksQQD~fLP~VE~G--~I~lIGATTENPSFqln~aLlSRC~ 274 (554)
T KOG2028|consen 201 AKTNDVRDIFEQAQNEKSL--TK--RKTILFIDEIHRFNKSQQDTFLPHVENG--DITLIGATTENPSFQLNAALLSRCR 274 (554)
T ss_pred cchHHHHHHHHHHHHHHhh--hc--ceeEEEeHHhhhhhhhhhhcccceeccC--ceEEEecccCCCccchhHHHHhccc
Confidence 3567788877776554443 22 5789999999999999999999998853 34445444 455688999999999
Q ss_pred EEEecCCChHHHHHHHHHHHH------Hc-------CCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHH----hcc-----
Q 017884 194 RFRFAPLEPVHVTERLKHVIE------AE-------GLDVTEGGLAALVRLCNGDMRKALNILQSTHM----ASQ----- 251 (364)
Q Consensus 194 ~i~~~~~~~~~~~~~l~~~~~------~~-------~~~i~~~~~~~l~~~~~g~~r~a~~~l~~~~~----~~~----- 251 (364)
++.+.+++.+.+..+|.+-.. +. .+.+++.++++++..+.||.|.++|.|+.... ..+
T Consensus 275 VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR~aLN~Lems~~m~~tr~g~~~~~ 354 (554)
T KOG2028|consen 275 VFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDARAALNALEMSLSMFCTRSGQSSRV 354 (554)
T ss_pred eeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHHHHHHHHHHHHHHHHhhcCCcccc
Confidence 999999999999999887443 11 12477889999999999999999999986622 122
Q ss_pred cCchHHHHHhc----------CCCChHHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH-hcCCChHH
Q 017884 252 QITEEAVYLCT----------GNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVF-KIKMPSDV 320 (364)
Q Consensus 252 ~i~~~~v~~~~----------~~~~~~~~~~l~~~l~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~~-~~~~~~~~ 320 (364)
.++.++|++.+ +...++.+..+.+.+.++|..+++.|+.+|+ +.|++|..+-+.+.+... .+++.+..
T Consensus 355 ~lSidDvke~lq~s~~~YDr~Ge~HYntISA~HKSmRG~D~nAslY~LaRML-egGEdPLYVARRlvR~ASEDIGlaD~S 433 (554)
T KOG2028|consen 355 LLSIDDVKEGLQRSHILYDRAGEEHYNTISALHKSMRGSDQNASLYWLARML-EGGEDPLYVARRLVRFASEDIGLADPS 433 (554)
T ss_pred eecHHHHHHHHhhccceecccchhHHHHHHHHHHhhcCCccchHHHHHHHHH-ccCCCcHHHHHHHHHHhhcccCcCCch
Confidence 78889988765 3446678999999999999999999999999 999999999999888875 34554444
Q ss_pred HHHHHHHHHHHHHHHhcCC
Q 017884 321 RVRLMNDLADIEYRLSFGC 339 (364)
Q Consensus 321 ~~~i~~~l~~~~~~l~~~~ 339 (364)
.... ..+-.+.-...|.
T Consensus 434 ~L~~--Avaa~qav~~vGm 450 (554)
T KOG2028|consen 434 ALTQ--AVAAYQAVHFVGM 450 (554)
T ss_pred hhHH--HHHHHHHHHHhCC
Confidence 4333 3333443444444
No 53
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.97 E-value=1.2e-29 Score=210.86 Aligned_cols=198 Identities=18% Similarity=0.267 Sum_probs=143.8
Q ss_pred CCCCCCChhhccCCCCCcchhccHHHHHHHHHHHh-----cCCCCcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEE
Q 017884 36 PDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTS-----ENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILEL 110 (364)
Q Consensus 36 ~~~~~~~~~~~~~p~~~~~~vg~~~~~~~l~~~~~-----~~~~~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~ 110 (364)
..+.+.++.+++||.+|+|++||++++..++-+++ +...+|++||||||+||||+|+.+++++ ...+...
T Consensus 7 ~~~~~~~l~~~lRP~~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~-----~~~~~~~ 81 (233)
T PF05496_consen 7 EQEEEAPLAERLRPKSLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANEL-----GVNFKIT 81 (233)
T ss_dssp -----S-HHHHTS-SSCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHC-----T--EEEE
T ss_pred cCCcchhhHHhcCCCCHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhcc-----CCCeEec
Confidence 34567889999999999999999999998876654 3457889999999999999999999997 4556667
Q ss_pred eCCCCCChHHHHHHHHHHHhcCccccCCccceEEEEEeCCCCCCHHHHHHHHHHHHHhc------------------cCc
Q 017884 111 NASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYT------------------KNT 172 (364)
Q Consensus 111 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~------------------~~~ 172 (364)
+++......++...+... . .+.|++|||+|++++..++.|+.+||... +..
T Consensus 82 sg~~i~k~~dl~~il~~l--------~---~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~F 150 (233)
T PF05496_consen 82 SGPAIEKAGDLAAILTNL--------K---EGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPF 150 (233)
T ss_dssp ECCC--SCHHHHHHHHT-------------TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----
T ss_pred cchhhhhHHHHHHHHHhc--------C---CCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCc
Confidence 765544444544443322 1 36799999999999999999999999742 123
Q ss_pred cEEEEeeccccCchhhhccceE-EEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Q 017884 173 RFALICNQVNKIIPALQSRCTR-FRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMA 249 (364)
Q Consensus 173 ~~Il~~~~~~~l~~~l~sr~~~-i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~a~~~l~~~~~~ 249 (364)
.+|.+|+....+.+++++|+-+ .++..++.+++.+++.+-+...++.++++++.+|+..|.|++|-|.++|+.+..+
T Consensus 151 TligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~rsrGtPRiAnrll~rvrD~ 228 (233)
T PF05496_consen 151 TLIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNIEIDEDAAEEIARRSRGTPRIANRLLRRVRDF 228 (233)
T ss_dssp EEEEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT-EE-HHHHHHHHHCTTTSHHHHHHHHHHHCCC
T ss_pred eEeeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHhcCCChHHHHHHHHHHHHH
Confidence 4566777888999999999955 5899999999999999999999999999999999999999999999999987644
No 54
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=99.97 E-value=7.3e-28 Score=216.48 Aligned_cols=273 Identities=18% Similarity=0.282 Sum_probs=195.2
Q ss_pred CCcchhccHHHHHHHHHHHhcCCCCc-EEEeCCCCccHHHHHHHHHHHHcCCC-------------CCCcEEEEeCC---
Q 017884 51 SLADVAAHRDIVDTIDRLTSENRLPH-LLLYGPPGTGKTSTILAVARKLYGAQ-------------YHNMILELNAS--- 113 (364)
Q Consensus 51 ~~~~~vg~~~~~~~l~~~~~~~~~~~-lll~G~~G~GKt~la~~l~~~l~~~~-------------~~~~~~~~~~~--- 113 (364)
.|++++||+.++..|...+..++.+| +||+||+|+||+++|.++++.+.|.+ .++++..+...
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~ 81 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQH 81 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEeccccc
Confidence 48899999999999999999999888 89999999999999999999998864 12233333221
Q ss_pred --------------------CCCChHHHHHHHHHHHhcCccccCCccceEEEEEeCCCCCCHHHHHHHHHHHHHhccCcc
Q 017884 114 --------------------DDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTR 173 (364)
Q Consensus 114 --------------------~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~ 173 (364)
...+++.+++ +.++....|+ .+ +++|+|||++|.|+..++++|+++||+|| ++.
T Consensus 82 ~g~~~~~~~~~~~~~~~~~~~~I~id~ir~-i~~~l~~~p~-~~---~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~ 155 (314)
T PRK07399 82 QGKLITASEAEEAGLKRKAPPQIRLEQIRE-IKRFLSRPPL-EA---PRKVVVIEDAETMNEAAANALLKTLEEPG-NGT 155 (314)
T ss_pred cccccchhhhhhccccccccccCcHHHHHH-HHHHHccCcc-cC---CceEEEEEchhhcCHHHHHHHHHHHhCCC-CCe
Confidence 0123456665 4555555554 33 59999999999999999999999999999 889
Q ss_pred EEEEeeccccCchhhhccceEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccC
Q 017884 174 FALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQI 253 (364)
Q Consensus 174 ~Il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~a~~~l~~~~~~~~~i 253 (364)
||++++.++++.++|+|||+.+.|++++.+++.++|......++.. .....++..++|+++.|++.++.... +
T Consensus 156 fILi~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~~~---~~~~~l~~~a~Gs~~~al~~l~~~~~----~ 228 (314)
T PRK07399 156 LILIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEILN---INFPELLALAQGSPGAAIANIEQLQS----I 228 (314)
T ss_pred EEEEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhccccch---hHHHHHHHHcCCCHHHHHHHHHHHHH----H
Confidence 9999999999999999999999999999999999999875433222 22467889999999999998865431 1
Q ss_pred chHHHHHhcCCCChHHHHHHHHHHHhccHHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHH
Q 017884 254 TEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLA-LVDIVREVTMFVFKIKMPSDVRVRLMNDLADIE 332 (364)
Q Consensus 254 ~~~~v~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~l~~l~~~~~~~-~~~i~~~l~~~~~~~~~~~~~~~~i~~~l~~~~ 332 (364)
..+.+..+.. +. .+...++.+-..+....+.. -.-++.-+...++. ......+++.+.+..
T Consensus 229 ~~~~~~~~~~-------------~~-~~~~~~~~~a~~~~~~~~~e~Q~~~l~~~~~~~~~----~~~~~~~~~~l~~a~ 290 (314)
T PRK07399 229 PPELLQKLEQ-------------PP-KSPLEALELAKDISEELDIEQQLWLIDYLQQHYWQ----KTKNRQLLKQLEKLR 290 (314)
T ss_pred HHHHHHHHHh-------------cc-cCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH----hhcchHHHHHHHHHH
Confidence 2222222211 11 12222332222221011111 11222222233333 112578899999999
Q ss_pred HHHhcCCChHHHHHHHHHHHHH
Q 017884 333 YRLSFGCNDKLQLGSIISTFTQ 354 (364)
Q Consensus 333 ~~l~~~~~~~~~l~~l~~~l~~ 354 (364)
+.+..+.|+++.++.++.+++.
T Consensus 291 ~~l~~nvn~~lv~e~~~l~l~~ 312 (314)
T PRK07399 291 KQLLSYVQPRLAWEVTLLELSQ 312 (314)
T ss_pred HHHHHcCCcchhHHHHHHHHhc
Confidence 9999999999999999998864
No 55
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.96 E-value=4.9e-27 Score=213.87 Aligned_cols=291 Identities=20% Similarity=0.299 Sum_probs=207.6
Q ss_pred cCCCCCcchhccHHHHHHHHHHHhcCCCCc-EEEeCCCCccHHHHHHHHHHHHcCCC-----------------------
Q 017884 47 YRPQSLADVAAHRDIVDTIDRLTSENRLPH-LLLYGPPGTGKTSTILAVARKLYGAQ----------------------- 102 (364)
Q Consensus 47 ~~p~~~~~~vg~~~~~~~l~~~~~~~~~~~-lll~G~~G~GKt~la~~l~~~l~~~~----------------------- 102 (364)
+.|..+++++||+++...|...+..++.+| ++|+||+|+|||++|+.+++.+.|..
T Consensus 17 ~~P~~~~~l~Gh~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~~~c~~c~~i~ 96 (351)
T PRK09112 17 PSPSENTRLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPDPASPVWRQIA 96 (351)
T ss_pred CCCCchhhccCcHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCCCCCHHHHHHH
Confidence 689999999999999999999999999999 89999999999999999999998821
Q ss_pred --CCCcEEEEeCC---------CCCChHHHHHHHHHHHhcCccccCCccceEEEEEeCCCCCCHHHHHHHHHHHHHhccC
Q 017884 103 --YHNMILELNAS---------DDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKN 171 (364)
Q Consensus 103 --~~~~~~~~~~~---------~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~ 171 (364)
.+.++..+... ...+++.++.... +....+. .++++|+||||+|.|+..++++|++.+|+|+.+
T Consensus 97 ~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~-~l~~~~~----~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~ 171 (351)
T PRK09112 97 QGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGH-FLSQTSG----DGNWRIVIIDPADDMNRNAANAILKTLEEPPAR 171 (351)
T ss_pred cCCCCCEEEeecccccccccccccCCHHHHHHHHH-Hhhhccc----cCCceEEEEEchhhcCHHHHHHHHHHHhcCCCC
Confidence 01223333321 1234567775443 3333222 236899999999999999999999999999999
Q ss_pred ccEEEEeeccccCchhhhccceEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcc
Q 017884 172 TRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQ 251 (364)
Q Consensus 172 ~~~Il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~a~~~l~~~~~~~~ 251 (364)
+.||++++.+.++.++++|||+.+.|+|++.+++.+|+.......+ ++++.+..+++.++|++|.|+++++.....
T Consensus 172 ~~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~~--~~~~~~~~i~~~s~G~pr~Al~ll~~~~~~-- 247 (351)
T PRK09112 172 ALFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQG--SDGEITEALLQRSKGSVRKALLLLNYGGLE-- 247 (351)
T ss_pred ceEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcccC--CCHHHHHHHHHHcCCCHHHHHHHHhcCcHH--
Confidence 9999999999999999999999999999999999999998644333 778999999999999999999998653321
Q ss_pred cCchHHHHHhcC--CCChHHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 017884 252 QITEEAVYLCTG--NPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLA 329 (364)
Q Consensus 252 ~i~~~~v~~~~~--~~~~~~~~~l~~~l~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~i~~~l~ 329 (364)
+. ..+...+. .........+.+.+.+.+....+.++..++ .+.+....+..-..+ +...-..+.+...
T Consensus 248 -~~-~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~l-------~d~l~~~~~~~~~~g-~~~~~~~~~~~~~ 317 (351)
T PRK09112 248 -II-ATIDQLLAGSGPDARKAHKLADALSGRESEVQFDFFRDHL-------LDRIMAEARRAAEAG-DLALAERLARLWS 317 (351)
T ss_pred -HH-HHHHHHHhhccCCcchHHHHHHHHhCCChHHHHHHHHHHH-------HHHHHHHHHhhcccC-chhhHHHHHHHHH
Confidence 11 12222222 222234567777777777666677766665 334444333321111 1111123444444
Q ss_pred HHHHHHhcC----CChHHHHHHHHHHHHHHH
Q 017884 330 DIEYRLSFG----CNDKLQLGSIISTFTQAR 356 (364)
Q Consensus 330 ~~~~~l~~~----~~~~~~l~~l~~~l~~~~ 356 (364)
++......+ -+++..+..++.++..++
T Consensus 318 ~~~~~~~~~~~~nld~~~~~~~~~~~~~~~~ 348 (351)
T PRK09112 318 EIIEEIVEAEAYNLDRKQTVISLLEKLHRAF 348 (351)
T ss_pred HHHHHHhhhhhhCcCHHHHHHHHHHHHHHHH
Confidence 444444433 467777777777776654
No 56
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=99.96 E-value=5.5e-27 Score=212.39 Aligned_cols=285 Identities=22% Similarity=0.272 Sum_probs=202.2
Q ss_pred HHHHHHHHHHHhcCCCCc-EEEeCCCCccHHHHHHHHHHHHcCCC-------------------CCCcEEEEeCC---CC
Q 017884 59 RDIVDTIDRLTSENRLPH-LLLYGPPGTGKTSTILAVARKLYGAQ-------------------YHNMILELNAS---DD 115 (364)
Q Consensus 59 ~~~~~~l~~~~~~~~~~~-lll~G~~G~GKt~la~~l~~~l~~~~-------------------~~~~~~~~~~~---~~ 115 (364)
....+.|.+.+..++.+| ++|+||+|+||+++|.++++.+.|.. .++++..+... ..
T Consensus 8 ~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~ 87 (334)
T PRK07993 8 RPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKGKSS 87 (334)
T ss_pred hHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEeccccccc
Confidence 367888999999999999 79999999999999999999998852 23455555433 24
Q ss_pred CChHHHHHHHHHHHhcCccccCCccceEEEEEeCCCCCCHHHHHHHHHHHHHhccCccEEEEeeccccCchhhhccceEE
Q 017884 116 RGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRF 195 (364)
Q Consensus 116 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~l~~~l~sr~~~i 195 (364)
.+++.+++....+..+.. .+++||+|||++|.|+..+.|+|+++||+||+++.||++|++++++.++|+|||+.+
T Consensus 88 I~idqiR~l~~~~~~~~~-----~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSRCq~~ 162 (334)
T PRK07993 88 LGVDAVREVTEKLYEHAR-----LGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSRCRLH 162 (334)
T ss_pred CCHHHHHHHHHHHhhccc-----cCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhccccc
Confidence 678899986666554322 236999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCchHHHHHhcCCCChHHHHHHHH
Q 017884 196 RFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISY 275 (364)
Q Consensus 196 ~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~a~~~l~~~~~~~~~i~~~~v~~~~~~~~~~~~~~l~~ 275 (364)
.|++++.+++..||... ..++++.+..++..++|++..|+..++.-......--...+...... .+...+..
T Consensus 163 ~~~~~~~~~~~~~L~~~-----~~~~~~~a~~~~~la~G~~~~Al~l~~~~~~~~r~~~~~~l~~~~~~---~~~~~~~~ 234 (334)
T PRK07993 163 YLAPPPEQYALTWLSRE-----VTMSQDALLAALRLSAGAPGAALALLQPERWQQREALCQALAYALPS---GDWLSLLP 234 (334)
T ss_pred cCCCCCHHHHHHHHHHc-----cCCCHHHHHHHHHHcCCCHHHHHHHhcCchHHHHHHHHHHHHHHhcC---CCHHHHHH
Confidence 99999999999999752 24677778888999999999999887532211100000111111111 12222333
Q ss_pred HHHhccHHHHHHHH----HHHHH-hcCCCH---HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhc--CCChHHHH
Q 017884 276 WLLNESFADSFKRI----SEMKM-RKGLAL---VDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSF--GCNDKLQL 345 (364)
Q Consensus 276 ~l~~~~~~~~~~~l----~~l~~-~~~~~~---~~i~~~l~~~~~~~~~~~~~~~~i~~~l~~~~~~l~~--~~~~~~~l 345 (364)
.+.+.+....+.++ .+++. ..|... .+....+ ..+.. .++...+..+++.+.+....+.. +.|.++.+
T Consensus 235 ~~~~~~~~~~L~~l~~~~rD~l~~~~~~~~~~n~d~~~~i-~~~a~-~~~~~~l~~~~~~l~~~~~~l~~~~N~N~~L~l 312 (334)
T PRK07993 235 ALNHEQAPARLHWLATLLMDALKRQHGAAYVTNQDQPPLV-AQLAN-HLSPARLQAILGDVCHCREQLLSVTGVNRELLL 312 (334)
T ss_pred HHcccCHHHHHHHHHHHHHHHHHHhcCCcceeCHHHHHHH-HHHHH-hCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 33333333333333 33221 222111 1111111 12222 45788888999999999999985 78999999
Q ss_pred HHHHHHHHHHHHH
Q 017884 346 GSIISTFTQARSA 358 (364)
Q Consensus 346 ~~l~~~l~~~~~~ 358 (364)
+.++.++..++..
T Consensus 313 e~lll~~~~~~~~ 325 (334)
T PRK07993 313 TDLLLRIEHYLQP 325 (334)
T ss_pred HHHHHHHHHHHcc
Confidence 9999999877643
No 57
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=99.96 E-value=2.7e-27 Score=215.44 Aligned_cols=289 Identities=19% Similarity=0.274 Sum_probs=199.0
Q ss_pred CCcchhc-cHHHHHHHHHHHhcCCCCc-EEEeCCCCccHHHHHHHHHHHHcCCCC-------------------CCcEEE
Q 017884 51 SLADVAA-HRDIVDTIDRLTSENRLPH-LLLYGPPGTGKTSTILAVARKLYGAQY-------------------HNMILE 109 (364)
Q Consensus 51 ~~~~~vg-~~~~~~~l~~~~~~~~~~~-lll~G~~G~GKt~la~~l~~~l~~~~~-------------------~~~~~~ 109 (364)
.|+.++| |+.+++.|...+..++.+| ++|+||+|+||+++|+.+++.+.|... +.++..
T Consensus 3 ~~~~i~~~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~~ 82 (329)
T PRK08058 3 TWEQLTALQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHL 82 (329)
T ss_pred cHHHHHhhHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEEE
Confidence 4788999 9999999999999999999 699999999999999999999988641 223333
Q ss_pred EeC-CCCCChHHHHHHHHHHHhcCccccCCccceEEEEEeCCCCCCHHHHHHHHHHHHHhccCccEEEEeeccccCchhh
Q 017884 110 LNA-SDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPAL 188 (364)
Q Consensus 110 ~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~l~~~l 188 (364)
+.. ....+++.+++.+..+... ++ .+ +++|+||||+|.|+..++++|+++||+||.++.||++++.+.++.++|
T Consensus 83 i~~~~~~i~id~ir~l~~~~~~~-~~-~~---~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~ll~TI 157 (329)
T PRK08058 83 VAPDGQSIKKDQIRYLKEEFSKS-GV-ES---NKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQILPTI 157 (329)
T ss_pred eccccccCCHHHHHHHHHHHhhC-Cc-cc---CceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhCcHHH
Confidence 322 2234667888776655443 32 33 589999999999999999999999999999999999999999999999
Q ss_pred hccceEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCchHHHHHhcCCCChH
Q 017884 189 QSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPK 268 (364)
Q Consensus 189 ~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~a~~~l~~~~~~~~~i~~~~v~~~~~~~~~~ 268 (364)
+|||++++|.+++.+++.+++.. +| ++++....++..+ |+++.|+..++........-....+...+......
T Consensus 158 rSRc~~i~~~~~~~~~~~~~L~~----~g--i~~~~~~~l~~~~-g~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (329)
T PRK08058 158 LSRCQVVEFRPLPPESLIQRLQE----EG--ISESLATLLAGLT-NSVEEALALSEDDWFAQARALVIKLYEALHEKDLQ 230 (329)
T ss_pred HhhceeeeCCCCCHHHHHHHHHH----cC--CChHHHHHHHHHc-CCHHHHHHHhcCchHHHHHHHHHHHHHHHHcCCHH
Confidence 99999999999999999888864 34 6667666777664 78999998775322111000000111111111111
Q ss_pred HHHHHHHHHHh----cc-HHHHH----HHHHHHHH-hcCCCH----HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH
Q 017884 269 DIEQISYWLLN----ES-FADSF----KRISEMKM-RKGLAL----VDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYR 334 (364)
Q Consensus 269 ~~~~l~~~l~~----~~-~~~~~----~~l~~l~~-~~~~~~----~~i~~~l~~~~~~~~~~~~~~~~i~~~l~~~~~~ 334 (364)
.+..+.+.+.. ++ ....+ .++++++. ..|... .+....+ ..+.. .++...+..+++.+.++...
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~rD~l~~~~~~~~~~~n~d~~~~l-~~~a~-~~s~~~l~~~~~~~~~~~~~ 308 (329)
T PRK08058 231 SFVFVQEKWMPLFKEKDQQQLGLDLLLLIYRDLLYLQLGEEDRLVFREQKEML-QQLAL-SYSQQQIVAALELILEAKRR 308 (329)
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHhcCCcccccCHHHHHHH-HHHHH-hCCHHHHHHHHHHHHHHHHH
Confidence 22222221211 11 11112 23333331 222111 1111111 22222 45788899999999999999
Q ss_pred HhcCCChHHHHHHHHHHHH
Q 017884 335 LSFGCNDKLQLGSIISTFT 353 (364)
Q Consensus 335 l~~~~~~~~~l~~l~~~l~ 353 (364)
+..+.|+.+.++.++.++.
T Consensus 309 l~~n~n~~L~le~lll~~~ 327 (329)
T PRK08058 309 LNSNVNFQLVMEQLVLRLQ 327 (329)
T ss_pred HHHcCCHHHHHHHHHHhcc
Confidence 9999999999999998874
No 58
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.96 E-value=2.4e-26 Score=210.43 Aligned_cols=294 Identities=21% Similarity=0.303 Sum_probs=200.3
Q ss_pred cCCCCCcchhccHHHHHHHHHHHhcCCCCc-EEEeCCCCccHHHHHHHHHHHHcCCCC----------------------
Q 017884 47 YRPQSLADVAAHRDIVDTIDRLTSENRLPH-LLLYGPPGTGKTSTILAVARKLYGAQY---------------------- 103 (364)
Q Consensus 47 ~~p~~~~~~vg~~~~~~~l~~~~~~~~~~~-lll~G~~G~GKt~la~~l~~~l~~~~~---------------------- 103 (364)
.+|.++++++||+.+++.|.+.+..++.+| +||+||+|+||+++|.++++.++|...
T Consensus 13 ~~P~~~~~iiGq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c 92 (365)
T PRK07471 13 PHPRETTALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVA 92 (365)
T ss_pred CCCCchhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChHH
Confidence 699999999999999999999999999999 899999999999999999999987542
Q ss_pred -------CCcEEEEeCC---------CCCChHHHHHHHHHHHhcCccccCCccceEEEEEeCCCCCCHHHHHHHHHHHHH
Q 017884 104 -------HNMILELNAS---------DDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEK 167 (364)
Q Consensus 104 -------~~~~~~~~~~---------~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~ 167 (364)
+.++..+... ....++.+++....+. ..+. .++++|++|||+|.|+...+++|++++++
T Consensus 93 ~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~-~~~~----~~~~kVviIDead~m~~~aanaLLK~LEe 167 (365)
T PRK07471 93 RRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFG-LTAA----EGGWRVVIVDTADEMNANAANALLKVLEE 167 (365)
T ss_pred HHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhC-cCcc----cCCCEEEEEechHhcCHHHHHHHHHHHhc
Confidence 1223333321 1234667776554433 2221 23689999999999999999999999999
Q ss_pred hccCccEEEEeeccccCchhhhccceEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 017884 168 YTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTH 247 (364)
Q Consensus 168 ~~~~~~~Il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~a~~~l~~~~ 247 (364)
++.++.||++|+.+..+.++++|||+.+.|++++.+++.+++... +...+++.+..++..++|+++.++.+++.-.
T Consensus 168 pp~~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~----~~~~~~~~~~~l~~~s~Gsp~~Al~ll~~~~ 243 (365)
T PRK07471 168 PPARSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAA----GPDLPDDPRAALAALAEGSVGRALRLAGGDG 243 (365)
T ss_pred CCCCeEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHh----cccCCHHHHHHHHHHcCCCHHHHHHHhcccc
Confidence 999999999999999999999999999999999999999999875 3344566668899999999999999885322
Q ss_pred HhcccCchHHHHHhcC---CCChHHHHHHHHHHHhcc----HHHHHHHHHHHHH---hcCCC---HHHH----HHHHHHH
Q 017884 248 MASQQITEEAVYLCTG---NPLPKDIEQISYWLLNES----FADSFKRISEMKM---RKGLA---LVDI----VREVTMF 310 (364)
Q Consensus 248 ~~~~~i~~~~v~~~~~---~~~~~~~~~l~~~l~~~~----~~~~~~~l~~l~~---~~~~~---~~~i----~~~l~~~ 310 (364)
.. .. +.+...+. ......+..+.+.+...+ +...+.++..++. ..+.. .... ...+..
T Consensus 244 ~~---~~-~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~l~d~~~~~~~~~~~~~~~~~~~~~l~~- 318 (365)
T PRK07471 244 LA---LY-RRLTALLDTLPRLDRRALHALADAAAGRDRAARFALFLDLLDRWLARLARAGARGAPPPEAVPGEAALLAR- 318 (365)
T ss_pred hH---HH-HHHHHHHhccccCCHHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHHhhccCCCCccccchhhHHHHh-
Confidence 11 11 11112111 222333456666666555 4334444444431 11110 1101 111111
Q ss_pred HHhcCCChHHHHHHHHHHHHHHHHHh-cCCChHHHHHHHHHHHHHH
Q 017884 311 VFKIKMPSDVRVRLMNDLADIEYRLS-FGCNDKLQLGSIISTFTQA 355 (364)
Q Consensus 311 ~~~~~~~~~~~~~i~~~l~~~~~~l~-~~~~~~~~l~~l~~~l~~~ 355 (364)
+.. ......+.+..+.+...-.... .+-|.++.++.++..+..+
T Consensus 319 ~~~-~~~~~~~~~~~~~l~~~~~~~~~~~Ln~~l~~~~~l~~~~~~ 363 (365)
T PRK07471 319 LAP-DARLRRWAEVWEKIGRRARRTEAVNLDRKALVLDVFGLLAEA 363 (365)
T ss_pred hcc-chhHHHHHHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHh
Confidence 110 1123334444444444443333 4679999999999888654
No 59
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=99.96 E-value=2.7e-26 Score=207.34 Aligned_cols=281 Identities=20% Similarity=0.269 Sum_probs=198.2
Q ss_pred HHHHHHhcCCCCc-EEEeCCCCccHHHHHHHHHHHHcCCC-------------------CCCcEEEEeCC---CCCChHH
Q 017884 64 TIDRLTSENRLPH-LLLYGPPGTGKTSTILAVARKLYGAQ-------------------YHNMILELNAS---DDRGIDV 120 (364)
Q Consensus 64 ~l~~~~~~~~~~~-lll~G~~G~GKt~la~~l~~~l~~~~-------------------~~~~~~~~~~~---~~~~~~~ 120 (364)
...+++..++.+| ++|+||+|+||+++|+.+++.+.|.. .++++..+... ...+++.
T Consensus 11 ~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~id~ 90 (328)
T PRK05707 11 LWQQLAGRGRHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEADKTIKVDQ 90 (328)
T ss_pred HHHHHHHCCCcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCCHHH
Confidence 3444566788899 89999999999999999999999853 23345555432 3467889
Q ss_pred HHHHHHHHHhcCccccCCccceEEEEEeCCCCCCHHHHHHHHHHHHHhccCccEEEEeeccccCchhhhccceEEEecCC
Q 017884 121 VRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPL 200 (364)
Q Consensus 121 ~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~l~~~l~sr~~~i~~~~~ 200 (364)
+++.+..+..+ +. .++++|+|||++|.|+..++++|+++||+||.++.||++|+.+..+.++|+|||+.+.|+++
T Consensus 91 iR~l~~~~~~~-~~----~~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~ 165 (328)
T PRK05707 91 VRELVSFVVQT-AQ----LGGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLP 165 (328)
T ss_pred HHHHHHHHhhc-cc----cCCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCc
Confidence 99866555443 22 22689999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCchHHHHHhcCCCChHHHHHHHHHHHhc
Q 017884 201 EPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNE 280 (364)
Q Consensus 201 ~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~a~~~l~~~~~~~~~i~~~~v~~~~~~~~~~~~~~l~~~l~~~ 280 (364)
+.+++.+|+.... ...+++.+..++..++|++..|+..++........--.+.+..+... ......+.+.+.+.
T Consensus 166 ~~~~~~~~L~~~~----~~~~~~~~~~~l~la~Gsp~~A~~l~~~~~~~~r~~~~~~l~~~~~~--~~~~~~~~~~~~k~ 239 (328)
T PRK05707 166 SNEESLQWLQQAL----PESDERERIELLTLAGGSPLRALQLHEQGVREQRARVLDGVKKLLKQ--QQSASQLAESWLKV 239 (328)
T ss_pred CHHHHHHHHHHhc----ccCChHHHHHHHHHcCCCHHHHHHHHCcchHHHHHHHHHHHHHHhcC--cccHHHHHHHHccC
Confidence 9999999998643 13456677788899999999999876432211111111122222221 11344555555444
Q ss_pred cHHHHHHHHH----HHHH-hcCCC-----HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHh--cCCChHHHHHHH
Q 017884 281 SFADSFKRIS----EMKM-RKGLA-----LVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLS--FGCNDKLQLGSI 348 (364)
Q Consensus 281 ~~~~~~~~l~----~l~~-~~~~~-----~~~i~~~l~~~~~~~~~~~~~~~~i~~~l~~~~~~l~--~~~~~~~~l~~l 348 (364)
+....+.++. +++. ..+.. ..+....+.... . .++...+..+++.+.++...+. .+.|..+.++.+
T Consensus 240 ~~~~~l~~l~~~~~D~l~~~~~~~~~~~~n~d~~~~l~~~a-~-~~~~~~L~~~~~~l~~~~~~l~~~~NvN~~L~le~l 317 (328)
T PRK05707 240 PLLLLFDWFCDWAHDILRYQLTQDEEGLGLADMRKVLQYLA-Q-KSPQAKVLALQDWLLEQRQKVLGKANLNRQLLLEAL 317 (328)
T ss_pred CHHHHHHHHHHHHHHHHHHHcCCCcccccCHHHHHHHHHHH-H-hCCHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHH
Confidence 5444444433 3321 22211 122233332222 2 4578889999999999999885 678999999999
Q ss_pred HHHHHHHHH
Q 017884 349 ISTFTQARS 357 (364)
Q Consensus 349 ~~~l~~~~~ 357 (364)
+.++...++
T Consensus 318 ll~~~~~~~ 326 (328)
T PRK05707 318 LVQWAGLPG 326 (328)
T ss_pred HHHHHHHhc
Confidence 999977654
No 60
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=99.96 E-value=5.3e-26 Score=203.75 Aligned_cols=280 Identities=18% Similarity=0.196 Sum_probs=194.7
Q ss_pred HHHHHHHHHHHhcCCCCc-EEEeCCCCccHHHHHHHHHHHHcCCC-------------------CCCcEEEEeC--CCCC
Q 017884 59 RDIVDTIDRLTSENRLPH-LLLYGPPGTGKTSTILAVARKLYGAQ-------------------YHNMILELNA--SDDR 116 (364)
Q Consensus 59 ~~~~~~l~~~~~~~~~~~-lll~G~~G~GKt~la~~l~~~l~~~~-------------------~~~~~~~~~~--~~~~ 116 (364)
....+.|.+.+..++.+| ++|+||+|+||+++|+.+++.+.|.. .++++..+.. ....
T Consensus 8 ~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~I 87 (325)
T PRK06871 8 QPTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPIDNKDI 87 (325)
T ss_pred HHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEccccCCCC
Confidence 367888999999999999 79999999999999999999999853 2344555543 2346
Q ss_pred ChHHHHHHHHHHHhcCccccCCccceEEEEEeCCCCCCHHHHHHHHHHHHHhccCccEEEEeeccccCchhhhccceEEE
Q 017884 117 GIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFR 196 (364)
Q Consensus 117 ~~~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~l~~~l~sr~~~i~ 196 (364)
+++.+++........ +. .+++||+|||++|.|+..++|+|+++||+||+++.||++|+.+.++.++++|||+.+.
T Consensus 88 ~id~iR~l~~~~~~~-~~----~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~~~~ 162 (325)
T PRK06871 88 GVDQVREINEKVSQH-AQ----QGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQTWL 162 (325)
T ss_pred CHHHHHHHHHHHhhc-cc----cCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhceEEe
Confidence 788888865554433 22 2368999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCchHHHHHhcCCCChHHHHHHHHH
Q 017884 197 FAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYW 276 (364)
Q Consensus 197 ~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~a~~~l~~~~~~~~~i~~~~v~~~~~~~~~~~~~~l~~~ 276 (364)
|.+++.+++.+||.... ..+...+..++..++|.+..|+..++........ +.+..........+...+...
T Consensus 163 ~~~~~~~~~~~~L~~~~-----~~~~~~~~~~~~l~~g~p~~A~~~~~~~~~~~r~---~~~~~l~~~~~~~~~~~~~~~ 234 (325)
T PRK06871 163 IHPPEEQQALDWLQAQS-----SAEISEILTALRINYGRPLLALTFLEQGLLEQRK---TFLRQFWLFYRRRSPLELLPL 234 (325)
T ss_pred CCCCCHHHHHHHHHHHh-----ccChHHHHHHHHHcCCCHHHHHHHhhCChHHHHH---HHHHHHHHHhccCCHHHHHHH
Confidence 99999999999998753 2344456777889999999998877432211110 111111100001122333333
Q ss_pred HHhccHHHHH----HHHHHHHH-hcCCC----HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhcC--CChHHHH
Q 017884 277 LLNESFADSF----KRISEMKM-RKGLA----LVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFG--CNDKLQL 345 (364)
Q Consensus 277 l~~~~~~~~~----~~l~~l~~-~~~~~----~~~i~~~l~~~~~~~~~~~~~~~~i~~~l~~~~~~l~~~--~~~~~~l 345 (364)
+.+.+....+ .++.+++. ..|.. ..+....+..... +++...+..+++.+.++..++..+ .|..+.|
T Consensus 235 ~~k~~~~~~l~~l~~~~rD~l~~~~~~~~~~~n~D~~~~i~~~a~--~~s~~~L~~~i~~i~~~r~~L~~~~~iN~~L~l 312 (325)
T PRK06871 235 FDKELVLQQLDWLLAFLSDALKAKLDIASGWICQDLQRGILQFSQ--QQSAQGLLKAHQIIQKVRSDLLQINAVNQELIL 312 (325)
T ss_pred HhhccHHHHHHHHHHHHHHHHHHHcCCCcccccHhHHHHHHHHHH--hCCHHHHHHHHHHHHHHHHHHHcccccCHHHHH
Confidence 3322333222 33344331 22221 1222222222222 568889999999999999999655 5888888
Q ss_pred HHHHHHHH
Q 017884 346 GSIISTFT 353 (364)
Q Consensus 346 ~~l~~~l~ 353 (364)
+..+..+.
T Consensus 313 ~~~l~~~~ 320 (325)
T PRK06871 313 LDGLTRLV 320 (325)
T ss_pred HHHHHHHH
Confidence 88877653
No 61
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=99.95 E-value=2.7e-25 Score=198.98 Aligned_cols=276 Identities=18% Similarity=0.226 Sum_probs=193.6
Q ss_pred cHHHHHHHHHHHhcCCCCc-EEEeCCCCccHHHHHHHHHHHHcCCCC----------------CCcEEEEe--CC-----
Q 017884 58 HRDIVDTIDRLTSENRLPH-LLLYGPPGTGKTSTILAVARKLYGAQY----------------HNMILELN--AS----- 113 (364)
Q Consensus 58 ~~~~~~~l~~~~~~~~~~~-lll~G~~G~GKt~la~~l~~~l~~~~~----------------~~~~~~~~--~~----- 113 (364)
+....+.|...+..++.|| ++|+||+|+||+++|.++++.+.|.+. +.++..+. ..
T Consensus 9 ~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~k 88 (319)
T PRK08769 9 QQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDK 88 (319)
T ss_pred HHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCccccc
Confidence 4578889999999999999 899999999999999999999988641 23344442 21
Q ss_pred --CCCChHHHHHHHHHHHhcCccccCCccceEEEEEeCCCCCCHHHHHHHHHHHHHhccCccEEEEeeccccCchhhhcc
Q 017884 114 --DDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSR 191 (364)
Q Consensus 114 --~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~l~~~l~sr 191 (364)
...+++.+++.......+ +. .++++|+|||++|.|+..+.|+|+++||+||.++.||++++.++++.++|+||
T Consensus 89 ~~~~I~idqIR~l~~~~~~~-p~----~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSR 163 (319)
T PRK08769 89 LRTEIVIEQVREISQKLALT-PQ----YGIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSR 163 (319)
T ss_pred ccccccHHHHHHHHHHHhhC-cc----cCCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhh
Confidence 123466777655444332 22 22589999999999999999999999999999999999999999999999999
Q ss_pred ceEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhc-ccCchHHHHHhcCCCChHHH
Q 017884 192 CTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMAS-QQITEEAVYLCTGNPLPKDI 270 (364)
Q Consensus 192 ~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~a~~~l~~~~~~~-~~i~~~~v~~~~~~~~~~~~ 270 (364)
|+.+.|.+|+.+++.+||... + ++++.+..++..++|++..|+..++...... ..+ ...+..+.. ...++
T Consensus 164 Cq~i~~~~~~~~~~~~~L~~~----~--~~~~~a~~~~~l~~G~p~~A~~~~~~~~~~~r~~~-~~~l~~~~~--~~~~~ 234 (319)
T PRK08769 164 CQRLEFKLPPAHEALAWLLAQ----G--VSERAAQEALDAARGHPGLAAQWLREDGLALRRAV-AQDLEQIAS--GRAGA 234 (319)
T ss_pred heEeeCCCcCHHHHHHHHHHc----C--CChHHHHHHHHHcCCCHHHHHHHhcCchHHHHHHH-HHHHHHhcc--CcccH
Confidence 999999999999999999752 3 5666677789999999999988774322111 111 122222111 11234
Q ss_pred HHHHHHHHhcc-HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhcCCChHHHHHHHH
Q 017884 271 EQISYWLLNES-FADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDKLQLGSII 349 (364)
Q Consensus 271 ~~l~~~l~~~~-~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~i~~~l~~~~~~l~~~~~~~~~l~~l~ 349 (364)
..+.+.+.+.+ ....+.++.+++. ...... ... .-....+..+...+.+....+.++.|.++.+|.++
T Consensus 235 ~~~a~~~~~~~~~~~l~~~~~Dll~-~~~~~~---------~~~-~~~~~~L~~~~~~l~~~~~~~~~~lN~~L~le~ll 303 (319)
T PRK08769 235 VDVAQRWTNDGQADQRLRHAADLAL-AQASAG---------LTD-PSRLHKLATWFDAANRTRDLLRTTVRADLAVTELL 303 (319)
T ss_pred HHHHHHHccCCcHHHHHHHHHHHHH-HhcCCc---------ccC-hhhHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHH
Confidence 55555555433 2223344444441 111000 000 00344566667777777778888999999999999
Q ss_pred HHHHHHHHH
Q 017884 350 STFTQARSA 358 (364)
Q Consensus 350 ~~l~~~~~~ 358 (364)
..+..++..
T Consensus 304 l~~~~~~~~ 312 (319)
T PRK08769 304 LAWREGERQ 312 (319)
T ss_pred HHHHHHhcc
Confidence 999876543
No 62
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=99.95 E-value=1.2e-25 Score=206.37 Aligned_cols=290 Identities=32% Similarity=0.502 Sum_probs=211.7
Q ss_pred cchhccHHHHHHHHHHHh-cCCCCc-EEEeCCCCccHHHHHHHHHHHHcCCC-------------------CCCcEEEEe
Q 017884 53 ADVAAHRDIVDTIDRLTS-ENRLPH-LLLYGPPGTGKTSTILAVARKLYGAQ-------------------YHNMILELN 111 (364)
Q Consensus 53 ~~~vg~~~~~~~l~~~~~-~~~~~~-lll~G~~G~GKt~la~~l~~~l~~~~-------------------~~~~~~~~~ 111 (364)
+++++++.....+..+.. .++.|| ++|+||||+|||++|.++++.+.|.. .+.++++++
T Consensus 1 ~~~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~ 80 (325)
T COG0470 1 DELVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELN 80 (325)
T ss_pred CCcccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEec
Confidence 357888888888888877 677999 99999999999999999999999876 457899999
Q ss_pred CCCCCChHHHHHHHHHHHhcCccccCCccceEEEEEeCCCCCCHHHHHHHHHHHHHhccCccEEEEeeccccCchhhhcc
Q 017884 112 ASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSR 191 (364)
Q Consensus 112 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~l~~~l~sr 191 (364)
+++....+...+.+..+...... .+..++.+||+|||+|.|+.+++++|++++++|+.+++||++||.+.++.++|+||
T Consensus 81 ~s~~~~~~i~~~~vr~~~~~~~~-~~~~~~~kviiidead~mt~~A~nallk~lEep~~~~~~il~~n~~~~il~tI~SR 159 (325)
T COG0470 81 PSDLRKIDIIVEQVRELAEFLSE-SPLEGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFILITNDPSKILPTIRSR 159 (325)
T ss_pred ccccCCCcchHHHHHHHHHHhcc-CCCCCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEEEEcCChhhccchhhhc
Confidence 99887765556666666555443 33234699999999999999999999999999999999999999999999999999
Q ss_pred ceEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCchHHHHHhcCCCChH---
Q 017884 192 CTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPK--- 268 (364)
Q Consensus 192 ~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~a~~~l~~~~~~~~~i~~~~v~~~~~~~~~~--- 268 (364)
|+.+.|+|++......+.. ++.+..+++.+.||+|.+++.++..... ......+..........
T Consensus 160 c~~i~f~~~~~~~~i~~~e-----------~~~l~~i~~~~~gd~r~~i~~lq~~~~~--~~~~~~~~~~~~~~~~~~~~ 226 (325)
T COG0470 160 CQRIRFKPPSRLEAIAWLE-----------DQGLEEIAAVAEGDARKAINPLQALAAL--EIGEESIYEALLLALPESLA 226 (325)
T ss_pred ceeeecCCchHHHHHHHhh-----------ccchhHHHHHHHHHHHcCCCHHHHHHHh--cccHHHHHHHHHhhChhhcc
Confidence 9999999954444433332 5678889999999999999999988754 33333333333322222
Q ss_pred --HHHHHHHHHHhccHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcC---CChHHHHHHHHHHHHHHHHHhcCCChHH
Q 017884 269 --DIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIK---MPSDVRVRLMNDLADIEYRLSFGCNDKL 343 (364)
Q Consensus 269 --~~~~l~~~l~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~~~~~---~~~~~~~~i~~~l~~~~~~l~~~~~~~~ 343 (364)
....++..... +...+...........+.........+...+.... ............+...+.++..+....+
T Consensus 227 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (325)
T COG0470 227 QLAALELLKLAEN-KFLEALEKLWLLLLLEGLLGEDLLDQLQRELLKLDKALIQEEKAAELLDALAQARRRLLDGLLALI 305 (325)
T ss_pred cccHHHHHHHHHh-cchhHHHHHHHHHHHcCcchhHHHHHHHHHHhhchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444432 22333333333333444444445555445544321 3455566777888888889988989999
Q ss_pred HHHHHHHHHHHHHH
Q 017884 344 QLGSIISTFTQARS 357 (364)
Q Consensus 344 ~l~~l~~~l~~~~~ 357 (364)
++..++..+.....
T Consensus 306 ~~~~~~~~~~~~~~ 319 (325)
T COG0470 306 QLENLLAELLLLQL 319 (325)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999888876543
No 63
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=99.94 E-value=5.1e-24 Score=192.32 Aligned_cols=275 Identities=18% Similarity=0.227 Sum_probs=191.2
Q ss_pred HHHHHHHHHHhcCCCCc-EEEeCCCCccHHHHHHHHHHHHcCCCC--------------------CCcEEEEeCC-----
Q 017884 60 DIVDTIDRLTSENRLPH-LLLYGPPGTGKTSTILAVARKLYGAQY--------------------HNMILELNAS----- 113 (364)
Q Consensus 60 ~~~~~l~~~~~~~~~~~-lll~G~~G~GKt~la~~l~~~l~~~~~--------------------~~~~~~~~~~----- 113 (364)
...+.|... .++.+| ++|+||+|+||+++|+.+++.+.|... +.++..+...
T Consensus 8 ~~~~~l~~~--~~rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~ 85 (342)
T PRK06964 8 DDWNRLQAL--RARLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAE 85 (342)
T ss_pred HHHHHHHHh--cCCcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEeccccccc
Confidence 556666664 568888 899999999999999999999998541 2334444221
Q ss_pred ------------------------CCCChHHHHHHHHHHHhcCccccCCccceEEEEEeCCCCCCHHHHHHHHHHHHHhc
Q 017884 114 ------------------------DDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYT 169 (364)
Q Consensus 114 ------------------------~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~ 169 (364)
...+++.+++.+... ...+. .++++|+|||++|.|+..+.|+|++++|+||
T Consensus 86 ~~~~~~~~~~~~~~~~~~k~~~~~~~I~idqiR~l~~~~-~~~~~----~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp 160 (342)
T PRK06964 86 APGAADEAKEADADEGGKKTKAPSKEIKIEQVRALLDFC-GVGTH----RGGARVVVLYPAEALNVAAANALLKTLEEPP 160 (342)
T ss_pred ccccccccccchhhcccccccccccccCHHHHHHHHHHh-ccCCc----cCCceEEEEechhhcCHHHHHHHHHHhcCCC
Confidence 134567777755443 33222 2368999999999999999999999999999
Q ss_pred cCccEEEEeeccccCchhhhccceEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Q 017884 170 KNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMA 249 (364)
Q Consensus 170 ~~~~~Il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~a~~~l~~~~~~ 249 (364)
+++.||++|+.++++.++|+|||+.+.|++++.+++.+||... + +++. +.++..++|++..|+..++....
T Consensus 161 ~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~----~--~~~~--~~~l~~~~Gsp~~Al~~~~~~~~- 231 (342)
T PRK06964 161 PGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQ----G--VADA--DALLAEAGGAPLAALALASDENR- 231 (342)
T ss_pred cCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHc----C--CChH--HHHHHHcCCCHHHHHHHHCCChH-
Confidence 9999999999999999999999999999999999999999763 3 3332 34577889999999987732111
Q ss_pred cccCchHHHHHhcCCCChHHHHHHHHHHHhccHHHHHHHH----HHHHH-hcCCCH---HHHHHHHHHHHHhcCCChHHH
Q 017884 250 SQQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRI----SEMKM-RKGLAL---VDIVREVTMFVFKIKMPSDVR 321 (364)
Q Consensus 250 ~~~i~~~~v~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~l----~~l~~-~~~~~~---~~i~~~l~~~~~~~~~~~~~~ 321 (364)
.. .+.+...+.......+..+.+.+.+.+....+.++ .+++. ..+... .+....+.... . +++...+
T Consensus 232 --~~-~~~~~~~l~~~~~~~~~~~~~~~~k~~~~~~l~~l~~~lrD~l~~~~~~~~~~~~d~~~~l~~~a-~-~~~~~~L 306 (342)
T PRK06964 232 --PL-RDWTLGQLAAGAACDAFACAETLQKLPVPAVLGWLQRWLYDLLAQRLAGAPRYFPAQRAALARCA-A-AVDANAL 306 (342)
T ss_pred --HH-HHHHHHHHhccCchhHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHcCCCceecHhHHHHHHHHH-H-cCCHHHH
Confidence 00 11111122222223445555555555554444444 33321 222211 12222232222 2 4578889
Q ss_pred HHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHH
Q 017884 322 VRLMNDLADIEYRLSFGCNDKLQLGSIISTFTQA 355 (364)
Q Consensus 322 ~~i~~~l~~~~~~l~~~~~~~~~l~~l~~~l~~~ 355 (364)
..+++.+.+....+..+.|..+.++.++..+..+
T Consensus 307 ~~~~~~i~~~~~~~~~nvn~~L~le~lll~~~~~ 340 (342)
T PRK06964 307 ARFAKAVTRQRAVENHPLAARLVFEELFLGYREL 340 (342)
T ss_pred HHHHHHHHHHHHHhHCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999988654
No 64
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=99.94 E-value=3.7e-24 Score=191.37 Aligned_cols=276 Identities=17% Similarity=0.202 Sum_probs=188.5
Q ss_pred HHHHHHHHHHHhcCCCCc-EEEeCCCCccHHHHHHHHHHHHcCCC------------------CCCcEEEEeCC---CCC
Q 017884 59 RDIVDTIDRLTSENRLPH-LLLYGPPGTGKTSTILAVARKLYGAQ------------------YHNMILELNAS---DDR 116 (364)
Q Consensus 59 ~~~~~~l~~~~~~~~~~~-lll~G~~G~GKt~la~~l~~~l~~~~------------------~~~~~~~~~~~---~~~ 116 (364)
....+.|.+.+..++.+| ++|+||.|+||+++|+.+++.+.|.+ .++++..+... ...
T Consensus 9 ~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I 88 (319)
T PRK06090 9 VPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEKEGKSI 88 (319)
T ss_pred HHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCcCCCcC
Confidence 377889999999999999 89999999999999999999998863 23455555442 335
Q ss_pred ChHHHHHHHHHHHhcCccccCCccceEEEEEeCCCCCCHHHHHHHHHHHHHhccCccEEEEeeccccCchhhhccceEEE
Q 017884 117 GIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFR 196 (364)
Q Consensus 117 ~~~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~l~~~l~sr~~~i~ 196 (364)
+++.+++.... ....+. .+++||+|||++|.|+..+.|+|++++|+||.++.||++|+.++++.++|+|||+.+.
T Consensus 89 ~vdqiR~l~~~-~~~~~~----~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRCq~~~ 163 (319)
T PRK06090 89 TVEQIRQCNRL-AQESSQ----LNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQQWV 163 (319)
T ss_pred CHHHHHHHHHH-HhhCcc----cCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcceeEe
Confidence 77888875443 333232 2268999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCchHHHHHhcCCCChHHHHHHHHH
Q 017884 197 FAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYW 276 (364)
Q Consensus 197 ~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~a~~~l~~~~~~~~~i~~~~v~~~~~~~~~~~~~~l~~~ 276 (364)
|++|+.+++.+|+... ++. ....++..++|++..|+..++.-......--...+...+.... .+++.+...
T Consensus 164 ~~~~~~~~~~~~L~~~----~~~----~~~~~l~l~~G~p~~A~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~~~a~~ 234 (319)
T PRK06090 164 VTPPSTAQAMQWLKGQ----GIT----VPAYALKLNMGSPLKTLAMMKEGGLEKYHKLERQLVDALSGPV-SDQLKCASL 234 (319)
T ss_pred CCCCCHHHHHHHHHHc----CCc----hHHHHHHHcCCCHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCc-ccHHHHHHH
Confidence 9999999999999752 433 2356788899999999988742211111101122222222222 344555555
Q ss_pred HHhccHHHHHHHHH----HHHH-hcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhcC--CChHHHHHHHH
Q 017884 277 LLNESFADSFKRIS----EMKM-RKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFG--CNDKLQLGSII 349 (364)
Q Consensus 277 l~~~~~~~~~~~l~----~l~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~i~~~l~~~~~~l~~~--~~~~~~l~~l~ 349 (364)
+...+ ...+.++. +++. ..|....+....+ ..+. ..+...+...++.+.+....+..+ -|..+.++.++
T Consensus 235 ~~~~~-~~~l~~L~~ll~Dll~~~~g~~~~~~~~~~-~~l~--~~~~~~l~~~~~~l~~~~~~L~~~~~ln~elll~~ll 310 (319)
T PRK06090 235 IAADP-LTHLSWLWLLLTDAQKVHFGVQNEYYLPGS-AALG--PFTYSGLYVSTAKLERLKEQLQQFSGLNTELLIMNWL 310 (319)
T ss_pred HhcCc-HHHHHHHHHHHHHHHHHHhCCcchhhhHHH-HHHH--hhCHHHHHHHHHHHHHHHHHHHhccccCHHHHHHHHH
Confidence 43322 22333332 2221 2222222222222 1121 236666777888888888888644 37777777777
Q ss_pred HHH
Q 017884 350 STF 352 (364)
Q Consensus 350 ~~l 352 (364)
..+
T Consensus 311 l~~ 313 (319)
T PRK06090 311 IES 313 (319)
T ss_pred HHH
Confidence 665
No 65
>PRK05907 hypothetical protein; Provisional
Probab=99.94 E-value=6.9e-24 Score=189.90 Aligned_cols=272 Identities=11% Similarity=0.102 Sum_probs=222.2
Q ss_pred HHHHHHHhcCCCCcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCCCChHHHHHHHHHHHhcCccccCCccce
Q 017884 63 DTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASV 142 (364)
Q Consensus 63 ~~l~~~~~~~~~~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 142 (364)
..+.+.+++|. |.+++||..- ....+.+...+..++. ..+++... . -+.+.+.+++.|+ |++ +
T Consensus 8 ~~~~~~~~~~~-~~y~~~g~~~---~~~~~~l~~~~~~~~~----~~fdg~~~-~----~~~ii~~aetlPf-Fae---r 70 (311)
T PRK05907 8 KDFSQYYEEKR-PAVIVIGSSS---EEDKDIFIELLVSGRK----SEFDGQGL-L----QQELLSWTEHFGL-FAS---Q 70 (311)
T ss_pred HHHHHHHhcCC-ceEEEecCCc---HHHHHHHHHHhCCCcc----ceecCCCC-C----HHHHHHHHhcCCc-ccC---e
Confidence 44555677887 8899999987 6677777666543322 23444332 1 2345556888888 886 8
Q ss_pred EEEEEeCCCCCCHHHHHHHHHHHHHhccCccEE-EEeeccc---cCchhhhccceE---EEecCCChHHHHHHHHHHHHH
Q 017884 143 KLVLLDEADAMTKDAQFALRRVIEKYTKNTRFA-LICNQVN---KIIPALQSRCTR---FRFAPLEPVHVTERLKHVIEA 215 (364)
Q Consensus 143 ~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~I-l~~~~~~---~l~~~l~sr~~~---i~~~~~~~~~~~~~l~~~~~~ 215 (364)
++|++.+.+.+.....+.|..++++|++++.+| ++. ..+ ++.+.+...+.+ +.|+++.+.++.+|+.+++++
T Consensus 71 RlV~v~~~~~~~~~~~~~L~~Yl~np~~~~~liv~~~-~~d~~kkl~K~i~k~~~v~~~~e~~~l~e~~L~~Wi~~~~~~ 149 (311)
T PRK05907 71 ETIGIYQAEKMSSSTQEFLIRYARNPNPHLTLFLFTT-KQECFSSLSKKLSSALCLSLFGEWFADRDKRIAQLLIQRAKE 149 (311)
T ss_pred EEEEEecccccccccHHHHHHHHhCCCCCeEEEEEEe-cccHHHHHHHHHhhcceeccccccCCCCHHHHHHHHHHHHHH
Confidence 899999888887777889999999999876666 554 222 233444433333 489999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHc-CCCHHHHHHHHHHHHHhc---ccCchHHHHHhcCCCChHHHHHHHHHHHhccHHHHHHHHHH
Q 017884 216 EGLDVTEGGLAALVRLC-NGDMRKALNILQSTHMAS---QQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISE 291 (364)
Q Consensus 216 ~~~~i~~~~~~~l~~~~-~g~~r~a~~~l~~~~~~~---~~i~~~~v~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~l~~ 291 (364)
.|..+++++++.+++.+ +||+..+.++++++..+. +.||.++|.+++..+.+.++|++++++..++...|++.+++
T Consensus 150 ~g~~i~~~a~~~L~~~~~~~nL~~l~~EleKL~ly~g~~~~It~e~V~~lv~~s~e~nIF~L~dai~~~~~~~Al~il~~ 229 (311)
T PRK05907 150 LGISCSLGLASLFVSKFPQTGLFEILSEFQKLLCQMGKKESLEASDIQSFVVKKEAASLWKLRDALLRRDRVEGHSLLRS 229 (311)
T ss_pred cCCCcCHHHHHHHHHHccCCCHHHHHHHHHHHHHhcCCCCeECHHHHHHHhcCcccccHHHHHHHHHccCHHHHHHHHHH
Confidence 99999999999999999 699999999999999883 48999999999999999999999999999999999999999
Q ss_pred HHHhc-CCCHHHHHHHHHHHHHhc--------------C----CChHHHHHHHHHHHHHHHHHhcCC-ChHHHHHHHHHH
Q 017884 292 MKMRK-GLALVDIVREVTMFVFKI--------------K----MPSDVRVRLMNDLADIEYRLSFGC-NDKLQLGSIIST 351 (364)
Q Consensus 292 l~~~~-~~~~~~i~~~l~~~~~~~--------------~----~~~~~~~~i~~~l~~~~~~l~~~~-~~~~~l~~l~~~ 351 (364)
+. .. |++|..|++.+.+++ .+ . ++...+..+++.+.++|+.+|+|. ++.+.+|.|+.+
T Consensus 230 Ll-~~~ge~p~~ILall~rQf-l~~~k~l~~~g~~~~~p~~vafs~~~L~~~~~~l~~~D~~iKtg~~d~~~~lElli~~ 307 (311)
T PRK05907 230 LL-SDMGEDPLGIIAFLRSQC-LYGLRSIEEQSKERKHRIFVAYGKERLLQALNLLFYAESLIKNNVQDPILAVETLVIR 307 (311)
T ss_pred HH-HhcCCChHHHHHHHHHHH-HHHHHHHHHhcCCCCCCeEEEECHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 99 78 999999999999998 44 2 567889999999999999999986 889999999999
Q ss_pred HHH
Q 017884 352 FTQ 354 (364)
Q Consensus 352 l~~ 354 (364)
+|.
T Consensus 308 ~~~ 310 (311)
T PRK05907 308 MTN 310 (311)
T ss_pred Hhc
Confidence 874
No 66
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.94 E-value=7.1e-25 Score=200.50 Aligned_cols=210 Identities=18% Similarity=0.238 Sum_probs=165.3
Q ss_pred CCCCChhhccCCCCCcchhccHHHHHHHHHHHhc-----CCCCcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeC
Q 017884 38 IKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSE-----NRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNA 112 (364)
Q Consensus 38 ~~~~~~~~~~~p~~~~~~vg~~~~~~~l~~~~~~-----~~~~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~ 112 (364)
.....|..+|||.+|++++|+++.+..+..++.. ...+|++||||||+|||++|+++++.+. ..+...++
T Consensus 10 ~~~~~~~~~~rP~~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~-----~~~~~~~~ 84 (328)
T PRK00080 10 EEEDEIERSLRPKSLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMG-----VNIRITSG 84 (328)
T ss_pred cccchhhhhcCcCCHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhC-----CCeEEEec
Confidence 3446788999999999999999999998877752 3345699999999999999999999983 23333333
Q ss_pred CCCCChHHHHHHHHHHHhcCccccCCccceEEEEEeCCCCCCHHHHHHHHHHHHHhc------------------cCccE
Q 017884 113 SDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYT------------------KNTRF 174 (364)
Q Consensus 113 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~------------------~~~~~ 174 (364)
........+...+.. .+ .+.+++|||+|.++...++.|+..|+... +...+
T Consensus 85 ~~~~~~~~l~~~l~~--------l~---~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~l 153 (328)
T PRK00080 85 PALEKPGDLAAILTN--------LE---EGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTL 153 (328)
T ss_pred ccccChHHHHHHHHh--------cc---cCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceeecCCCceE
Confidence 322222233222221 11 36799999999999888888988888652 23557
Q ss_pred EEEeeccccCchhhhccc-eEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHh----
Q 017884 175 ALICNQVNKIIPALQSRC-TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMA---- 249 (364)
Q Consensus 175 Il~~~~~~~l~~~l~sr~-~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~a~~~l~~~~~~---- 249 (364)
|++++....+.+++++|| ..+.|++++.+++.+++...+...++.++++++..|++.++|++|.+.+.++.+...
T Consensus 154 i~at~~~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G~pR~a~~~l~~~~~~a~~~ 233 (328)
T PRK00080 154 IGATTRAGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRGTPRIANRLLRRVRDFAQVK 233 (328)
T ss_pred EeecCCcccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHc
Confidence 778888888999999998 679999999999999999999999999999999999999999999999999875532
Q ss_pred -cccCchHHHHHhcC
Q 017884 250 -SQQITEEAVYLCTG 263 (364)
Q Consensus 250 -~~~i~~~~v~~~~~ 263 (364)
...|+.+.+...+.
T Consensus 234 ~~~~I~~~~v~~~l~ 248 (328)
T PRK00080 234 GDGVITKEIADKALD 248 (328)
T ss_pred CCCCCCHHHHHHHHH
Confidence 24788888776653
No 67
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=99.93 E-value=3.8e-23 Score=181.23 Aligned_cols=258 Identities=13% Similarity=0.156 Sum_probs=183.2
Q ss_pred HHHHHHHHHHhcCCCCc-EEEeCCCCccHHHHHHHHHHHHcCCC-----------CCCcEEEEeCCC---CCChHHHHHH
Q 017884 60 DIVDTIDRLTSENRLPH-LLLYGPPGTGKTSTILAVARKLYGAQ-----------YHNMILELNASD---DRGIDVVRQQ 124 (364)
Q Consensus 60 ~~~~~l~~~~~~~~~~~-lll~G~~G~GKt~la~~l~~~l~~~~-----------~~~~~~~~~~~~---~~~~~~~~~~ 124 (364)
...+.|...+..++.+| ++|+||+|+||+.+|..+++.+.|.. .++++..+.... ..+++.+++.
T Consensus 4 ~~~~~L~~~i~~~rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~~~I~idqiR~l 83 (290)
T PRK05917 4 AAWEALIQRVRDQKVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKGRLHSIETPRAI 83 (290)
T ss_pred HHHHHHHHHHHcCCcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCCCcCcHHHHHHH
Confidence 45678999999999999 89999999999999999999999853 345555553322 2468888876
Q ss_pred HHHHHhcCccccCCccceEEEEEeCCCCCCHHHHHHHHHHHHHhccCccEEEEeeccccCchhhhccceEEEecCCChHH
Q 017884 125 IQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVH 204 (364)
Q Consensus 125 i~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~l~~~l~sr~~~i~~~~~~~~~ 204 (364)
....... |+ +++++|++||++|.|+.+++++|++++|+||+++.||++|++++.+.++++|||+.+.|++++
T Consensus 84 ~~~~~~~-p~----e~~~kv~ii~~ad~mt~~AaNaLLK~LEEPp~~~~fiL~~~~~~~ll~TI~SRcq~~~~~~~~--- 155 (290)
T PRK05917 84 KKQIWIH-PY----ESPYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAKPQRLPPTIRSRSLSIHIPMEE--- 155 (290)
T ss_pred HHHHhhC-cc----CCCceEEEEechhhcCHHHHHHHHHHhhcCCCCeEEEEEeCChhhCcHHHHhcceEEEccchh---
Confidence 6555433 22 226999999999999999999999999999999999999999999999999999999998861
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHH--HHHHHHHHHHHhcccCchHHHHHhcCCCChHHHHHHHHHHHhccH
Q 017884 205 VTERLKHVIEAEGLDVTEGGLAALVRLCNGDMR--KALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESF 282 (364)
Q Consensus 205 ~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r--~a~~~l~~~~~~~~~i~~~~v~~~~~~~~~~~~~~l~~~l~~~~~ 282 (364)
...++++.+..++..++|+++ .+...+... .+...... ...+..+++.+
T Consensus 156 ------------~~~i~~~~~~~l~~~~~g~~~~~~~~~~l~~~--------~~~~~~~~----re~~~~~L~~l----- 206 (290)
T PRK05917 156 ------------KTLVSKEDIAYLIGYAQGKESVTEVGQIVKGS--------ADTDKQVL----RDKTKAMLEVL----- 206 (290)
T ss_pred ------------ccCCCHHHHHHHHHHhCCChhHHHHHHHHhcc--------hHHHHHHH----HHHHHHHHHHH-----
Confidence 224788899999999999986 222222210 01111111 22223333222
Q ss_pred HHHHHHHHHHHH-hcCCCHH-HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHH
Q 017884 283 ADSFKRISEMKM-RKGLALV-DIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDKLQLGSIISTFTQARSAI 359 (364)
Q Consensus 283 ~~~~~~l~~l~~-~~~~~~~-~i~~~l~~~~~~~~~~~~~~~~i~~~l~~~~~~l~~~~~~~~~l~~l~~~l~~~~~~~ 359 (364)
+.++++++. ..|.+.. -+.......+... +...+..+++.+.+...++..+.|.++.++.++.++..+++..
T Consensus 207 ---l~~~RD~l~~~~~~~~~~l~~~d~~~~l~~~--~~~~l~~~i~~i~~a~~~l~~N~N~~l~le~l~l~l~~~~~~~ 280 (290)
T PRK05917 207 ---LQLFRDRFLLALKVPASALAYPDLLKEILTL--PVLPLEKVLSIIERAVQALDNSSSAPSCLEWVALQLWSLKNRQ 280 (290)
T ss_pred ---HHHHHHHHHHHcCCchhhhccHHHHHHHHhc--ccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHH
Confidence 234444331 2222221 1222333333322 2223778999999999999999999999999999999887754
No 68
>PRK05629 hypothetical protein; Validated
Probab=99.93 E-value=2.4e-23 Score=189.56 Aligned_cols=271 Identities=14% Similarity=0.134 Sum_probs=225.5
Q ss_pred CcEEEeCCCCccHHHHHHHHHHHHcCCC-CCCcEEEEeCCCCCChHHHHHHHHHHHhcCccccCCccceEEEEEeCCCCC
Q 017884 75 PHLLLYGPPGTGKTSTILAVARKLYGAQ-YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAM 153 (364)
Q Consensus 75 ~~lll~G~~G~GKt~la~~l~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l 153 (364)
|.++|||+...........+.+.+...+ ...++..+++.+.. . . .+.+.. +.|+ |++ +++|++++.+..
T Consensus 7 ~vyL~~G~e~~l~~~~~~~i~~~~~~~~~~~~n~~~~d~~e~~-~---~-~l~~~~-t~sl-F~~---~rlV~v~~~~~~ 76 (318)
T PRK05629 7 PVHLVLGDDEFLAERARLNIVHDIRSSMADSLQVTTLKASEVS-Q---G-ELLDAL-SPSL-FGE---DRVIVLTNMEQA 76 (318)
T ss_pred ceEEEEeCHHHHHHHHHHHHHHHHhccCCCCCceEEeecccCC-H---H-HHHHhh-CcCc-cCC---ceEEEEeChHhc
Confidence 4489999987777667776776665443 35677777766532 2 2 233433 6676 775 899999998887
Q ss_pred CHHHHHHHHHHHHHhccCccEEEEeeccc---cCchhhhccceEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 017884 154 TKDAQFALRRVIEKYTKNTRFALICNQVN---KIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVR 230 (364)
Q Consensus 154 ~~~~~~~L~~~le~~~~~~~~Il~~~~~~---~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~ 230 (364)
.+...+.++.++..+++++.+|+++.... ++.+.++..+.+++|.++.+.++..|+.+++++.|..++++++++|++
T Consensus 77 ~~~~~~~l~~~l~~~~~~~~Lil~~~~~~~~kk~~K~l~k~~~~ve~~~~~~~~l~~wi~~~~~~~g~~i~~~A~~~L~~ 156 (318)
T PRK05629 77 GKEPTDLALSAAVDPSPGIYLIIMHSGGGRTKSMVPKLEKIAVVHEAAKLKPRERPGWVTQEFKNHGVRPTPDVVHALLE 156 (318)
T ss_pred ChhHHHHHHHHHhCCCCCeEEEEEcCCcchhhHHHHHHHhcceEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 66677889999999988888888875332 345577778899999999999999999999999999999999999999
Q ss_pred HcCCCHHHHHHHHHHHHHhc-ccCchHHHHHhcCCCChHHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 017884 231 LCNGDMRKALNILQSTHMAS-QQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTM 309 (364)
Q Consensus 231 ~~~g~~r~a~~~l~~~~~~~-~~i~~~~v~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~ 309 (364)
.+++|+..+.++++++..+. +.||.++|.+++....+.++|++++++..++...++..+.++. ..|.+|..++..+.+
T Consensus 157 ~~g~dl~~l~~EleKL~~~~~~~It~e~V~~~v~~~~~~~iF~l~dAv~~g~~~~Al~~l~~l~-~~g~~pi~il~~l~~ 235 (318)
T PRK05629 157 GVGSDLRELASAISQLVEDTQGNVTVEKVRAYYVGVAEVSGFDIADLACAGQVSKAVASTRRAL-QLGVSPVALAAALSM 235 (318)
T ss_pred HHCccHHHHHHHHHHHHhcCCCCcCHHHHHHHhCCCccchHHHHHHHHHcCCHHHHHHHHHHHH-HcCCCcHHHHHHHHH
Confidence 99999999999999988663 5899999999999999999999999999999999999999998 889999999888876
Q ss_pred HHHhc----------------------------------CCChHHHHHHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHH
Q 017884 310 FVFKI----------------------------------KMPSDVRVRLMNDLADIEYRLSFGC-NDKLQLGSIISTFTQ 354 (364)
Q Consensus 310 ~~~~~----------------------------------~~~~~~~~~i~~~l~~~~~~l~~~~-~~~~~l~~l~~~l~~ 354 (364)
+++.+ +++...+.+++..+.++|..+|+|. ++.+.||.++.++++
T Consensus 236 ~~r~l~~l~~~~~~~~~~~ia~~l~i~p~~~~~~~~~ar~~s~~~L~~~l~~l~~~D~~~K~~~~d~~~~lE~~i~~~~~ 315 (318)
T PRK05629 236 KVGQIARLYSTRGRIDSFELAKELGMPPFVVEKTAKVARNWSGDAVSEAVILMADLDAAVKGQGGDPEFAIESAVRRVAE 315 (318)
T ss_pred HHHHHHHHHhhcCCCCHHHHHHHcCCChHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHh
Confidence 64432 5677788999999999999999865 999999999999987
Q ss_pred HH
Q 017884 355 AR 356 (364)
Q Consensus 355 ~~ 356 (364)
+.
T Consensus 316 ~~ 317 (318)
T PRK05629 316 LA 317 (318)
T ss_pred hc
Confidence 53
No 69
>PRK07452 DNA polymerase III subunit delta; Validated
Probab=99.93 E-value=3.8e-23 Score=189.39 Aligned_cols=272 Identities=18% Similarity=0.191 Sum_probs=220.3
Q ss_pred CcEEEeCCCCccHHHHHHHHHHHHcCCC-CCCcEEEEeCCCCCChHHHHHHHHHHHhcCccccCCccceEEEEEeCCCCC
Q 017884 75 PHLLLYGPPGTGKTSTILAVARKLYGAQ-YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAM 153 (364)
Q Consensus 75 ~~lll~G~~G~GKt~la~~l~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l 153 (364)
|.++|||+....+...+..+.+.+..+. ...++..+++.+. +.+.+.+ ..+.+.|+ |+. +++|+|++++.+
T Consensus 2 ~~yll~G~e~~l~~~~~~~l~~~~~~~~~~~fn~~~~d~~~~---~~~~~~~-~~~~t~pf-f~~---~rlVvv~~~~~~ 73 (326)
T PRK07452 2 PIYLYWGEDDFALNQAIEKLIDQVVDPEWKSFNYSRLDGDDA---DQAIQAL-NEAMTPPF-GSG---GRLVWLKNSPLC 73 (326)
T ss_pred CEEEEEcChHHHHHHHHHHHHHHhCCchhhhcchhhcCCccc---hHHHHHH-HHhcCCCC-CCC---ceEEEEeCchhh
Confidence 5689999999999999999988775433 2344555554432 2233333 33556666 554 899999998655
Q ss_pred ---CHHHHHHHHHHHHHhccCccEEEEee-cc---ccCchhhhccceEEEecCC---ChHHHHHHHHHHHHHcCCCCCHH
Q 017884 154 ---TKDAQFALRRVIEKYTKNTRFALICN-QV---NKIIPALQSRCTRFRFAPL---EPVHVTERLKHVIEAEGLDVTEG 223 (364)
Q Consensus 154 ---~~~~~~~L~~~le~~~~~~~~Il~~~-~~---~~l~~~l~sr~~~i~~~~~---~~~~~~~~l~~~~~~~~~~i~~~ 223 (364)
.++..+.|.++++.+++++++|+++. .. .+..+.+...+.+..|.++ +.+++..|+..++++.|+.++++
T Consensus 74 ~~~~~~~~~~L~~~l~~~~~~~~li~~~~~~~d~r~k~~k~l~k~~~~~~~~~~~~~~~~~l~~~i~~~~~~~g~~i~~~ 153 (326)
T PRK07452 74 QGCSEELLAELERTLPLIPENTHLLLTNTKKPDGRLKSTKLLQKLAEEKEFSLIPPWDTEGLKQLVERTAQELGVKLTPE 153 (326)
T ss_pred ccCCHHHHHHHHHHHcCCCCCcEEEEEeCCCcchHHHHHHHHHHceeEEEecCCCcccHHHHHHHHHHHHHHcCCCCCHH
Confidence 56778899999999998998888753 22 2455667777888888765 34679999999999999999999
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhc----ccCchHHHHHhcCCCChHHHHHHHHHHHhccHHHHHHHHHHHHHhcCCC
Q 017884 224 GLAALVRLCNGDMRKALNILQSTHMAS----QQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLA 299 (364)
Q Consensus 224 ~~~~l~~~~~g~~r~a~~~l~~~~~~~----~~i~~~~v~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~l~~l~~~~~~~ 299 (364)
+++.|++.+++|++.+.+++++++.+. +.||.++|..++... ..++|++++++..++...++..++.+. ..|++
T Consensus 154 a~~~L~~~~g~dl~~l~~EleKL~ly~~~~~~~It~~~V~~~v~~~-~~~if~l~dai~~~~~~~A~~~l~~L~-~~g~~ 231 (326)
T PRK07452 154 AAELLAEAVGNDSRRLYNELEKLALYAENSTKPISAEEVKALVSNT-TQNSLQLADALLQGNTGKALALLDDLL-DANEP 231 (326)
T ss_pred HHHHHHHHhCccHHHHHHHHHHHHHhccCCCCccCHHHHHHHhccC-cCcHHHHHHHHHCCCHHHHHHHHHHHH-HCCCc
Confidence 999999999999999999999999872 379999999999876 578999999999999999999999998 89999
Q ss_pred HHHHHHHHHHHHHhc-------------------------------------CCChHHHHHHHHHHHHHHHHHhcCCChH
Q 017884 300 LVDIVREVTMFVFKI-------------------------------------KMPSDVRVRLMNDLADIEYRLSFGCNDK 342 (364)
Q Consensus 300 ~~~i~~~l~~~~~~~-------------------------------------~~~~~~~~~i~~~l~~~~~~l~~~~~~~ 342 (364)
|..++..+.++++.+ +++...+..++..+.++|..+|+|.++.
T Consensus 232 p~~il~~l~~~~r~l~~~k~~~~~G~~~~~~ia~~lgi~~p~~~~~~~~~~~~~s~~~L~~~l~~L~~~D~~iK~g~~~~ 311 (326)
T PRK07452 232 ALRIVATLTGQFRTWLWVKLLVESGERDVKVIAKAAGIGNPKRIYFLRKEVQGLSSQQLLKLLPLLLDLEASLKQGANPI 311 (326)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHhCCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCChH
Confidence 999999888887754 3444557899999999999999999888
Q ss_pred HHHHHHHHHHHHHH
Q 017884 343 LQLGSIISTFTQAR 356 (364)
Q Consensus 343 ~~l~~l~~~l~~~~ 356 (364)
..|+.++.++|...
T Consensus 312 ~~le~~i~~~~~~~ 325 (326)
T PRK07452 312 NALQDKLIELCQLL 325 (326)
T ss_pred HHHHHHHHHHHHhh
Confidence 89999999999764
No 70
>PRK07914 hypothetical protein; Reviewed
Probab=99.93 E-value=8.7e-23 Score=185.87 Aligned_cols=270 Identities=14% Similarity=0.135 Sum_probs=228.7
Q ss_pred CcEEEeCCCCccHHHHHHHHHHHHcC-CC-CCCcEEEEeCCCCCChHHHHHHHHHHHhcCccccCCccceEEEEEeCCCC
Q 017884 75 PHLLLYGPPGTGKTSTILAVARKLYG-AQ-YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADA 152 (364)
Q Consensus 75 ~~lll~G~~G~GKt~la~~l~~~l~~-~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~ 152 (364)
|.++|||+.-.........+.+.+.. .+ ...++..+++.+.. . .+ +.+.. +.|+ |++ +++|+++++..
T Consensus 6 ~iYll~G~E~~l~~~~~~~i~~~~~~~~~~~~~n~~~~d~~~~~-~---~~-i~~~~-t~pl-F~~---rRlV~v~~~~~ 75 (320)
T PRK07914 6 PLHLVLGDEELLVERAVAAVLRSARQRAGTADVPVSRMRAGDVS-T---YE-LAELL-SPSL-FAE---ERVVVLEAAAE 75 (320)
T ss_pred ceEEEEecHHHHHHHHHHHHHHHHhcCcCCCCCceEEeccccCC-H---HH-HHHhc-CCCC-CCC---ceEEEEeChHh
Confidence 44899999989888888888877654 23 35677777765532 2 22 44444 6676 765 99999999877
Q ss_pred CCHHHHHHHHHHHHHhccCccEEEEeecc---ccCchhhhccc-eEEEecCC-ChHHHHHHHHHHHHHcCCCCCHHHHHH
Q 017884 153 MTKDAQFALRRVIEKYTKNTRFALICNQV---NKIIPALQSRC-TRFRFAPL-EPVHVTERLKHVIEAEGLDVTEGGLAA 227 (364)
Q Consensus 153 l~~~~~~~L~~~le~~~~~~~~Il~~~~~---~~l~~~l~sr~-~~i~~~~~-~~~~~~~~l~~~~~~~~~~i~~~~~~~ 227 (364)
+.+...+.|..+++.+++++.+|++++.. .++.+.++..+ .++.|.++ +..++..|+.+++++.|+.+++++++.
T Consensus 76 ~~~~~~~~l~~~l~~~~~~t~lil~~~~~~~~kk~~K~L~k~g~~~v~~~~~~~~~~l~~wi~~~a~~~g~~i~~~A~~~ 155 (320)
T PRK07914 76 AGKDAAALILSAAADLPPGTVLVVVHSGGGRAKALANQLRKLGAEVHPCARITKAAERADFVRKEFRSLRVKVDDDTVTA 155 (320)
T ss_pred ccHHHHHHHHHHHhCCCCCeEEEEEecCCcchhHHHHHHHHCCCEEEecCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 77777788999999999888888876432 23445676665 58999998 999999999999999999999999999
Q ss_pred HHHHcCCCHHHHHHHHHHHHHh-cccCchHHHHHhcCCCChHHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCHHHHHHH
Q 017884 228 LVRLCNGDMRKALNILQSTHMA-SQQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVRE 306 (364)
Q Consensus 228 l~~~~~g~~r~a~~~l~~~~~~-~~~i~~~~v~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~l~~l~~~~~~~~~~i~~~ 306 (364)
|++.++||+..+.++++++..+ .+.||.++|.+++..+...++|++++++..++...++..+..+. ..|++|..++..
T Consensus 156 L~~~~g~dl~~l~~EleKL~~~~~~~It~e~V~~~v~~~~~~~vf~L~dAi~~g~~~~A~~~l~~L~-~~ge~p~~il~~ 234 (320)
T PRK07914 156 LLDAVGSDLRELASACSQLVADTGGAVDAAAVRRYHSGKAEVKGFDIADKAVAGDVAGAAEALRWAM-MRGEPHVVLADA 234 (320)
T ss_pred HHHHHCccHHHHHHHHHHHhcCCCCCcCHHHHHHHcCCCeechHHHHHHHHHCCCHHHHHHHHHHHH-HCCCchHHHHHH
Confidence 9999999999999999998764 46899999999999999999999999999999999999999998 899999999999
Q ss_pred HHHHHHhc--------------------------------CCChHHHHHHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHH
Q 017884 307 VTMFVFKI--------------------------------KMPSDVRVRLMNDLADIEYRLSFGC-NDKLQLGSIISTFT 353 (364)
Q Consensus 307 l~~~~~~~--------------------------------~~~~~~~~~i~~~l~~~~~~l~~~~-~~~~~l~~l~~~l~ 353 (364)
+.++++.+ +++...+..++..+.++|..+|+|. ++.+.||.++.++|
T Consensus 235 l~~~~r~L~~~k~~~~~~~~i~~~l~i~p~~~~~~~~~~~~~s~~~L~~~l~~l~~~D~~lK~~~~~~~~~lE~~i~~~~ 314 (320)
T PRK07914 235 LAEAVHTIARVGPLSGDPYRLAGELGMPPWRVQKAQKQARRWSRDTVATAMRVVAALNADVKGAAADADYALESAVRRVA 314 (320)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHH
Confidence 99988875 6788889999999999999999884 89999999999999
Q ss_pred HH
Q 017884 354 QA 355 (364)
Q Consensus 354 ~~ 355 (364)
.+
T Consensus 315 ~~ 316 (320)
T PRK07914 315 EL 316 (320)
T ss_pred HH
Confidence 75
No 71
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=99.92 E-value=1.8e-22 Score=179.40 Aligned_cols=278 Identities=15% Similarity=0.123 Sum_probs=186.2
Q ss_pred HHHHHHHHHHHhcCCCCc-EEEeCCCCccHHHHHHHHHHHHcCCC--------CCCcEEEEeC-CCCCChHHHHHHHHHH
Q 017884 59 RDIVDTIDRLTSENRLPH-LLLYGPPGTGKTSTILAVARKLYGAQ--------YHNMILELNA-SDDRGIDVVRQQIQDF 128 (364)
Q Consensus 59 ~~~~~~l~~~~~~~~~~~-lll~G~~G~GKt~la~~l~~~l~~~~--------~~~~~~~~~~-~~~~~~~~~~~~i~~~ 128 (364)
..+++.+++.+++++.+| ++|+|++|+||+.++..+++.+.|.. .+.++..++. ....+.+.+++.++.+
T Consensus 2 ~~~~~~l~~~i~~~~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~vd~Ir~l~~~~ 81 (299)
T PRK07132 2 NNWIKFLDNSATQNKISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDLSKSEFLSAINKL 81 (299)
T ss_pred chHHHHHHHHHHhCCCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcCCHHHHHHHHHHh
Confidence 357788999999999999 68999999999999999999997742 1224444541 1224556666544443
Q ss_pred HhcCccccC-CccceEEEEEeCCCCCCHHHHHHHHHHHHHhccCccEEEEeeccccCchhhhccceEEEecCCChHHHHH
Q 017884 129 ASTQSFSFG-VKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTE 207 (364)
Q Consensus 129 ~~~~~~~~~-~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~ 207 (364)
++ ++ ..++++|++||+++.++..++++|++++|+||+++.+|++++.+.++.++++|||+++.|.+++.+++.+
T Consensus 82 ----~~-~~~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f~~l~~~~l~~ 156 (299)
T PRK07132 82 ----YF-SSFVQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEPDQQKILA 156 (299)
T ss_pred ----cc-CCcccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEECCCCCHHHHHH
Confidence 33 22 1136999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCchHHHHHhcCCC--ChHHHHHHHHHHHhc-cHHH
Q 017884 208 RLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNP--LPKDIEQISYWLLNE-SFAD 284 (364)
Q Consensus 208 ~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~a~~~l~~~~~~~~~i~~~~v~~~~~~~--~~~~~~~l~~~l~~~-~~~~ 284 (364)
|+... + ++++....++..++ ++++|+..+....... ...+.+.+... ....+....+...++ +...
T Consensus 157 ~l~~~----~--~~~~~a~~~a~~~~-~~~~a~~~~~~~~~~~----~~~~~~~l~~~~~~~~~l~~~~~~~~~ke~~~~ 225 (299)
T PRK07132 157 KLLSK----N--KEKEYNWFYAYIFS-NFEQAEKYINKESENL----LKKFEEALNKSLKEKYELILFLNKKLTKENALF 225 (299)
T ss_pred HHHHc----C--CChhHHHHHHHHcC-CHHHHHHHHhcCCHHH----HHHHHHHHHHhhhhHHHHHHHHHhhcChhhHHH
Confidence 98753 3 67777777777777 5999988864321100 00111111000 111111222211111 0111
Q ss_pred ----HHHHHHHHHHh-cCCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Q 017884 285 ----SFKRISEMKMR-KGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDKLQLGSIISTFTQAR 356 (364)
Q Consensus 285 ----~~~~l~~l~~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~i~~~l~~~~~~l~~~~~~~~~l~~l~~~l~~~~ 356 (364)
..-++++++.. .+.+...+... ...+....++...+ ++.+.+...++..+.|..++++.|+.++.++.
T Consensus 226 ll~~l~~~~rd~l~~~~~~~~~~i~~~-~~~i~~~~~s~~~l---i~~i~~~~~~L~~N~N~~l~~e~lll~l~e~~ 298 (299)
T PRK07132 226 LLKLLKFFFKSIFANKKKKNPKNIKVA-FSKKKKFKIEFFEL---ITIIDEFLNSLETNENFNLQKQAFLVKIYEIY 298 (299)
T ss_pred HHHHHHHHHHHHHHHhccCChHhHhhH-HHHHHHHhcCHHHH---HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhh
Confidence 11233333322 22233223333 34444333444433 78888999999999999999999999998764
No 72
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.92 E-value=1.2e-23 Score=178.16 Aligned_cols=204 Identities=16% Similarity=0.245 Sum_probs=162.5
Q ss_pred hhhccCCCCCcchhccHHHHHHHHHHHh-----cCCCCcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCCCC
Q 017884 43 WVEKYRPQSLADVAAHRDIVDTIDRLTS-----ENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRG 117 (364)
Q Consensus 43 ~~~~~~p~~~~~~vg~~~~~~~l~~~~~-----~~~~~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~ 117 (364)
.-...||++|+|++||++++++|.-.++ +....|+|||||||.||||+|+.+|+++ ..++...++.....
T Consensus 16 ~e~~lRP~~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Em-----gvn~k~tsGp~leK 90 (332)
T COG2255 16 IERSLRPKTLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANEL-----GVNLKITSGPALEK 90 (332)
T ss_pred hhcccCcccHHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHh-----cCCeEecccccccC
Confidence 3456899999999999999999887775 3467789999999999999999999998 33433334443334
Q ss_pred hHHHHHHHHHHHhcCccccCCccceEEEEEeCCCCCCHHHHHHHHHHHHHhc------------------cCccEEEEee
Q 017884 118 IDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYT------------------KNTRFALICN 179 (364)
Q Consensus 118 ~~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~------------------~~~~~Il~~~ 179 (364)
..++...+... . .+.|++|||+|++++...+.|...||.+. +...+|-+|+
T Consensus 91 ~gDlaaiLt~L--------e---~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIGATT 159 (332)
T COG2255 91 PGDLAAILTNL--------E---EGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIGATT 159 (332)
T ss_pred hhhHHHHHhcC--------C---cCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEeeecc
Confidence 44444433321 1 37899999999999999999999999752 1233566777
Q ss_pred ccccCchhhhccc-eEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhc-----ccC
Q 017884 180 QVNKIIPALQSRC-TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMAS-----QQI 253 (364)
Q Consensus 180 ~~~~l~~~l~sr~-~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~a~~~l~~~~~~~-----~~i 253 (364)
....+..+|++|| .+.++.-++.+++..++.+-+...++.++++++..|+..+.|.+|-|..+|.++..++ +.|
T Consensus 160 r~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rSRGTPRIAnRLLrRVRDfa~V~~~~~I 239 (332)
T COG2255 160 RAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARRSRGTPRIANRLLRRVRDFAQVKGDGDI 239 (332)
T ss_pred ccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHhccCCcHHHHHHHHHHHHHHHHhcCCcc
Confidence 8889999999997 7888999999999999999999999999999999999999999999999998776543 355
Q ss_pred chHHHHHhc
Q 017884 254 TEEAVYLCT 262 (364)
Q Consensus 254 ~~~~v~~~~ 262 (364)
+.+....++
T Consensus 240 ~~~ia~~aL 248 (332)
T COG2255 240 DRDIADKAL 248 (332)
T ss_pred cHHHHHHHH
Confidence 555544443
No 73
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.92 E-value=7.5e-24 Score=178.56 Aligned_cols=166 Identities=29% Similarity=0.450 Sum_probs=136.7
Q ss_pred HHHHHHHhcCCCCc-EEEeCCCCccHHHHHHHHHHHHcCCC-------------------CCCcEEEEeCC-CCCChHHH
Q 017884 63 DTIDRLTSENRLPH-LLLYGPPGTGKTSTILAVARKLYGAQ-------------------YHNMILELNAS-DDRGIDVV 121 (364)
Q Consensus 63 ~~l~~~~~~~~~~~-lll~G~~G~GKt~la~~l~~~l~~~~-------------------~~~~~~~~~~~-~~~~~~~~ 121 (364)
+.|++.+..++.+| ++|+||+|+|||++++.+++.+.|.. ...++..+... ...+.+.+
T Consensus 2 ~~l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~~~~~~~~i 81 (188)
T TIGR00678 2 QQLKRALEKGRLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEGQSIKVDQV 81 (188)
T ss_pred hHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccccCcCCHHHH
Confidence 46788889999988 89999999999999999999998751 11222233221 22456777
Q ss_pred HHHHHHHHhcCccccCCccceEEEEEeCCCCCCHHHHHHHHHHHHHhccCccEEEEeeccccCchhhhccceEEEecCCC
Q 017884 122 RQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLE 201 (364)
Q Consensus 122 ~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~l~~~l~sr~~~i~~~~~~ 201 (364)
++.+.. +...++ ++ +++++||||+|.+++..++.|+++|++++.++.+|++++...++.+++++||.++.|.|++
T Consensus 82 ~~i~~~-~~~~~~-~~---~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~ 156 (188)
T TIGR00678 82 RELVEF-LSRTPQ-ES---GRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLS 156 (188)
T ss_pred HHHHHH-HccCcc-cC---CeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCC
Confidence 765544 444443 33 5899999999999999999999999999999999999988899999999999999999999
Q ss_pred hHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHH
Q 017884 202 PVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKA 239 (364)
Q Consensus 202 ~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~a 239 (364)
.+++.+|+.+. | +++++++.++..++|++|.|
T Consensus 157 ~~~~~~~l~~~----g--i~~~~~~~i~~~~~g~~r~~ 188 (188)
T TIGR00678 157 EEALLQWLIRQ----G--ISEEAAELLLALAGGSPGAA 188 (188)
T ss_pred HHHHHHHHHHc----C--CCHHHHHHHHHHcCCCcccC
Confidence 99999999876 4 78999999999999999874
No 74
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.92 E-value=9.2e-23 Score=192.08 Aligned_cols=208 Identities=25% Similarity=0.436 Sum_probs=173.8
Q ss_pred CCCChhhccCCCCCcchhccHHHHHHHHHHHhc--------------------------------CCCCc--EEEeCCCC
Q 017884 39 KASPWVEKYRPQSLADVAAHRDIVDTIDRLTSE--------------------------------NRLPH--LLLYGPPG 84 (364)
Q Consensus 39 ~~~~~~~~~~p~~~~~~vg~~~~~~~l~~~~~~--------------------------------~~~~~--lll~G~~G 84 (364)
+..+|+++|+|+.|.|++|.+.+-..+..|++. ++++. ++|+||||
T Consensus 257 h~kLWVdky~Pk~FtdLLsDe~tNR~~L~WLK~WD~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~GppG 336 (877)
T KOG1969|consen 257 HDKLWVDKYRPKKFTDLLSDEKTNRRMLGWLKQWDPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGPPG 336 (877)
T ss_pred CcceeecccChhHHHHHhcchhHHHHHHHHHHhhcHHhhcchHhhhccccccchhhhhhcccCccCCCccceEEeecCCC
Confidence 455999999999999999988887777777651 12233 79999999
Q ss_pred ccHHHHHHHHHHHHcCCCCCCcEEEEeCCCCCChHHHHHHHHHHHhcCccccCCccceEEEEEeCCCCCCHHHHHHHHHH
Q 017884 85 TGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRV 164 (364)
Q Consensus 85 ~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~ 164 (364)
.||||+|+.+|++. ++.++++|+++.+....+.+.|......... .+....+..+||||+|--.....+.++.+
T Consensus 337 lGKTTLAHViAkqa-----GYsVvEINASDeRt~~~v~~kI~~avq~~s~-l~adsrP~CLViDEIDGa~~~~Vdvilsl 410 (877)
T KOG1969|consen 337 LGKTTLAHVIAKQA-----GYSVVEINASDERTAPMVKEKIENAVQNHSV-LDADSRPVCLVIDEIDGAPRAAVDVILSL 410 (877)
T ss_pred CChhHHHHHHHHhc-----CceEEEecccccccHHHHHHHHHHHHhhccc-cccCCCcceEEEecccCCcHHHHHHHHHH
Confidence 99999999999996 7889999999999999999999998877665 43223688999999999998889999998
Q ss_pred HHHh------c---------------cCccEEEEeecccc-CchhhhccceEEEecCCChHHHHHHHHHHHHHcCCCCCH
Q 017884 165 IEKY------T---------------KNTRFALICNQVNK-IIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTE 222 (364)
Q Consensus 165 le~~------~---------------~~~~~Il~~~~~~~-l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~ 222 (364)
++.- + -.-.+|.+||.... ...+|+--|.++.|.+|+...+.+.|+.+|.++|+.++.
T Consensus 411 v~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdLYaPaLR~Lr~~A~ii~f~~p~~s~Lv~RL~~IC~rE~mr~d~ 490 (877)
T KOG1969|consen 411 VKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICNDLYAPALRPLRPFAEIIAFVPPSQSRLVERLNEICHRENMRADS 490 (877)
T ss_pred HHhhcchhhcCcccchhhhhhhccccccCCEEEEecCccchhhhhcccceEEEEecCCChhHHHHHHHHHHhhhcCCCCH
Confidence 8721 1 11247888886542 334555668999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhccc
Q 017884 223 GGLAALVRLCNGDMRKALNILQSTHMASQQ 252 (364)
Q Consensus 223 ~~~~~l~~~~~g~~r~a~~~l~~~~~~~~~ 252 (364)
.++..|++++.+|+|.++|.||.+......
T Consensus 491 ~aL~~L~el~~~DIRsCINtLQfLa~~~~r 520 (877)
T KOG1969|consen 491 KALNALCELTQNDIRSCINTLQFLASNVDR 520 (877)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHhccc
Confidence 999999999999999999999999877654
No 75
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.92 E-value=1.5e-23 Score=201.79 Aligned_cols=225 Identities=23% Similarity=0.332 Sum_probs=170.6
Q ss_pred CCChhhccCCCCCcchhccHHHHHHHHHHHhcCCCCcEEEeCCCCccHHHHHHHHHHHHcCC-----CCCCcEEEEeCCC
Q 017884 40 ASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA-----QYHNMILELNASD 114 (364)
Q Consensus 40 ~~~~~~~~~p~~~~~~vg~~~~~~~l~~~~~~~~~~~lll~G~~G~GKt~la~~l~~~l~~~-----~~~~~~~~~~~~~ 114 (364)
..||.++|||.+|++++|++..++.++..+......|++|+||||+|||++|+++++..... .....++++++..
T Consensus 52 ~~~~~~~~rp~~f~~iiGqs~~i~~l~~al~~~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~id~~~ 131 (531)
T TIGR02902 52 TEPLSEKTRPKSFDEIIGQEEGIKALKAALCGPNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEIDATT 131 (531)
T ss_pred cchHHHhhCcCCHHHeeCcHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEEcccc
Confidence 47999999999999999999999999988877777789999999999999999998764221 1134677777653
Q ss_pred CCCh-HHHHH-HHH-------HHHhc--------CccccCCccceEEEEEeCCCCCCHHHHHHHHHHHHHh---------
Q 017884 115 DRGI-DVVRQ-QIQ-------DFAST--------QSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKY--------- 168 (364)
Q Consensus 115 ~~~~-~~~~~-~i~-------~~~~~--------~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~--------- 168 (364)
.... ..+.+ .+. ..... .....-...++++++|||++.|+...|+.|+++|++.
T Consensus 132 ~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a~gG~L~IdEI~~L~~~~q~~LL~~Le~~~~~~~~~~~ 211 (531)
T TIGR02902 132 ARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRAHGGVLFIDEIGELHPVQMNKLLKVLEDRKVFLDSAYY 211 (531)
T ss_pred ccCCccccchhhcCCcccchhccccccccCCcccccCchhhccCCcEEEEechhhCCHHHHHHHHHHHHhCeeeeccccc
Confidence 1100 00110 010 00000 0000001235689999999999999999999999862
Q ss_pred -------------------ccCccEEEEe-eccccCchhhhccceEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 017884 169 -------------------TKNTRFALIC-NQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAAL 228 (364)
Q Consensus 169 -------------------~~~~~~Il~~-~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l 228 (364)
+.++++|++| +.+..+++++++||..+.|++++.+++..+++..+++.++.+++++++.|
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrsR~~~I~f~pL~~eei~~Il~~~a~k~~i~is~~al~~I 291 (531)
T TIGR02902 212 NSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRSRCVEIFFRPLLDEEIKEIAKNAAEKIGINLEKHALELI 291 (531)
T ss_pred cccCcccccchhhhcccCcccceEEEEEecCCcccCChHHhhhhheeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHH
Confidence 2244666655 56788999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCHHHHHHHHHHHHHhc-----ccCchHHHHHhcCCC
Q 017884 229 VRLCNGDMRKALNILQSTHMAS-----QQITEEAVYLCTGNP 265 (364)
Q Consensus 229 ~~~~~g~~r~a~~~l~~~~~~~-----~~i~~~~v~~~~~~~ 265 (364)
..++. |.|.+.+.++.++..+ ..|+.+++..++...
T Consensus 292 ~~y~~-n~Rel~nll~~Aa~~A~~~~~~~It~~dI~~vl~~~ 332 (531)
T TIGR02902 292 VKYAS-NGREAVNIVQLAAGIALGEGRKRILAEDIEWVAENG 332 (531)
T ss_pred HHhhh-hHHHHHHHHHHHHHHHhhCCCcEEcHHHHHHHhCCc
Confidence 88775 8999999998876433 369999999887654
No 76
>PRK06585 holA DNA polymerase III subunit delta; Reviewed
Probab=99.91 E-value=1.9e-21 Score=179.35 Aligned_cols=283 Identities=16% Similarity=0.195 Sum_probs=226.0
Q ss_pred HHHHHhc--CCCCcEEEeCCCCccHHHHHHHHHHHHcCCC-CCCcEEEEeCCCCCChHHHHHHHHHHHhcCccccCCccc
Q 017884 65 IDRLTSE--NRLPHLLLYGPPGTGKTSTILAVARKLYGAQ-YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKAS 141 (364)
Q Consensus 65 l~~~~~~--~~~~~lll~G~~G~GKt~la~~l~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 141 (364)
+...+.. +..|.++|||+........+..+.+.+...+ ..+++..+++.+... .+ ..+.+.+.+.|+ |+.
T Consensus 9 ~~~~l~~~~~~~~~yll~G~e~~li~~~~~~l~~~~~~~~~~~fn~~~~~~~e~~~--~~-~~~~~~~~t~sl-F~~--- 81 (343)
T PRK06585 9 VDRFLARPDPKIRAVLLYGPDRGLVRERARRLAKSVVPDLDDPFAVVRLDGDDLDA--DP-ARLEDEANAISL-FGG--- 81 (343)
T ss_pred HHHHHhCCCCCCeEEEEeCCchHHHHHHHHHHHHHhcCCCCCCcceeeccHHHhhc--CH-HHHHHHHhCCCC-CCC---
Confidence 3444443 3455589999999999999999988875433 234455554432110 12 234456777787 775
Q ss_pred eEEEEEeCCCCCCHHHHHHHHHHHHHhccCccEEEEeeccc---cCchhhh--ccceEEEecCCChHHHHHHHHHHHHHc
Q 017884 142 VKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVN---KIIPALQ--SRCTRFRFAPLEPVHVTERLKHVIEAE 216 (364)
Q Consensus 142 ~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~---~l~~~l~--sr~~~i~~~~~~~~~~~~~l~~~~~~~ 216 (364)
+++|++++.+ +...+.|..+++.+++++.+|+.+...+ ++.+.+. ..+..+.|.+++..++..|+.+++++.
T Consensus 82 ~rlViv~~~~---~~~~~~L~~~l~~~~~~~~lil~~~~~~~~~kl~k~~~~~~~~~~v~~~~~~~~~l~~~i~~~~~~~ 158 (343)
T PRK06585 82 RRLIWVRAGS---KNLAAALKALLESPPGDAFIVIEAGDLKKGSSLRKLFETAAYAAAIPCYADDERDLARLIDDELAEA 158 (343)
T ss_pred ceEEEEECCc---hhHHHHHHHHHcCCCCCcEEEEEcCCCCcccHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHHHHHC
Confidence 8899999653 3456678899999888888887764432 2233332 235678899999999999999999999
Q ss_pred CCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhc---ccCchHHHHHhcCCCChHHHHHHHHHHHhccHHHHHHHHHHHH
Q 017884 217 GLDVTEGGLAALVRLCNGDMRKALNILQSTHMAS---QQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMK 293 (364)
Q Consensus 217 ~~~i~~~~~~~l~~~~~g~~r~a~~~l~~~~~~~---~~i~~~~v~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~l~~l~ 293 (364)
|+.+++++++.|++.++||++.+.++++++..+. +.||.++|..+++...+.++|++++++..++...++..+..++
T Consensus 159 g~~i~~~a~~~L~~~~g~dl~~l~~EleKL~ly~~~~~~It~edV~~lv~~~~e~~if~l~dai~~~~~~~a~~~l~~ll 238 (343)
T PRK06585 159 GLRITPDARALLVALLGGDRLASRNEIEKLALYAHGKGEITLDDVRAVVGDASALSLDDAADAALAGDLAAFERALDRAL 238 (343)
T ss_pred CCCCCHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHhCCcccccHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999875 4799999999999999999999999999999999999999998
Q ss_pred HhcCCCHHHHHHHHHHHHHhc-------------------------------------CCChHHHHHHHHHHHHHHHHHh
Q 017884 294 MRKGLALVDIVREVTMFVFKI-------------------------------------KMPSDVRVRLMNDLADIEYRLS 336 (364)
Q Consensus 294 ~~~~~~~~~i~~~l~~~~~~~-------------------------------------~~~~~~~~~i~~~l~~~~~~l~ 336 (364)
..|++|..|+..+.++++.+ .++...+.+++..+.++|..+|
T Consensus 239 -~~g~~p~~il~~L~~~~r~L~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~s~~~L~~~l~~l~~~d~~lK 317 (343)
T PRK06585 239 -AEGTAPVLILRAALRHFQRLHIVRLKVENGKSAEQAIASLRPPVFFKRKPDFEKALRRWSLERLLRALERLQAAELDCR 317 (343)
T ss_pred -HcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhhCCCCCcchHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHh
Confidence 89999999999999988865 4455567899999999999999
Q ss_pred cCC-ChHHHHHHHHHHHHHHHHH
Q 017884 337 FGC-NDKLQLGSIISTFTQARSA 358 (364)
Q Consensus 337 ~~~-~~~~~l~~l~~~l~~~~~~ 358 (364)
.|. ++.+.++.++.++|....+
T Consensus 318 ~~~~~~~~~le~~i~~~~~~~~~ 340 (343)
T PRK06585 318 RNPALADAIARRVLLSIAVRARR 340 (343)
T ss_pred cCCCcHHHHHHHHHHHHHHHHHh
Confidence 876 7788899999999975554
No 77
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.91 E-value=8.2e-23 Score=185.66 Aligned_cols=198 Identities=15% Similarity=0.226 Sum_probs=154.8
Q ss_pred CCCcchhccHHHHHHHHHHHh-----cCCCCcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCCCChHHHHHH
Q 017884 50 QSLADVAAHRDIVDTIDRLTS-----ENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQ 124 (364)
Q Consensus 50 ~~~~~~vg~~~~~~~l~~~~~-----~~~~~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (364)
++|++++|++++++.|..++. .+..+|++|+||||+|||++++++++.+.. .+...++........+...
T Consensus 1 ~~~~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~-----~~~~~~~~~~~~~~~l~~~ 75 (305)
T TIGR00635 1 KLLAEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGV-----NLKITSGPALEKPGDLAAI 75 (305)
T ss_pred CCHHHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCC-----CEEEeccchhcCchhHHHH
Confidence 479999999999999998887 344567999999999999999999999742 2233333322222333332
Q ss_pred HHHHHhcCccccCCccceEEEEEeCCCCCCHHHHHHHHHHHHHhc------------------cCccEEEEeeccccCch
Q 017884 125 IQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYT------------------KNTRFALICNQVNKIIP 186 (364)
Q Consensus 125 i~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~------------------~~~~~Il~~~~~~~l~~ 186 (364)
+.. .+ .+.+++|||+|.+++..++.|+.++++.. +...+|.+++....+.+
T Consensus 76 l~~--------~~---~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t~~~~~l~~ 144 (305)
T TIGR00635 76 LTN--------LE---EGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGATTRAGMLTS 144 (305)
T ss_pred HHh--------cc---cCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEecCCccccCH
Confidence 222 11 36799999999999999999998887543 22556777788888999
Q ss_pred hhhccc-eEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhc-----ccCchHHHHH
Q 017884 187 ALQSRC-TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMAS-----QQITEEAVYL 260 (364)
Q Consensus 187 ~l~sr~-~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~a~~~l~~~~~~~-----~~i~~~~v~~ 260 (364)
++++|| ..+.|.+++.+++.+++...+...++.+++++++.|++.++|++|.+.+.++.+...+ ..|+.+.+..
T Consensus 145 ~l~sR~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G~pR~~~~ll~~~~~~a~~~~~~~it~~~v~~ 224 (305)
T TIGR00635 145 PLRDRFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRGTPRIANRLLRRVRDFAQVRGQKIINRDIALK 224 (305)
T ss_pred HHHhhcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHcCCCCcCHHHHHH
Confidence 999998 6789999999999999999999999999999999999999999999999888765332 3588888776
Q ss_pred hcC
Q 017884 261 CTG 263 (364)
Q Consensus 261 ~~~ 263 (364)
.+.
T Consensus 225 ~l~ 227 (305)
T TIGR00635 225 ALE 227 (305)
T ss_pred HHH
Confidence 654
No 78
>PRK08487 DNA polymerase III subunit delta; Validated
Probab=99.91 E-value=2.4e-21 Score=176.96 Aligned_cols=279 Identities=21% Similarity=0.247 Sum_probs=219.6
Q ss_pred HHHHHHHhcCCCCc-EEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCCCChHHHHHHHHHHHhcCccccCCccc
Q 017884 63 DTIDRLTSENRLPH-LLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKAS 141 (364)
Q Consensus 63 ~~l~~~~~~~~~~~-lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 141 (364)
..+...++++..++ ++|||+.-.........+.+.+...+...+ +.++ . .. -+.+.+.+.+.|+ |+.
T Consensus 4 ~~l~~~lk~~~l~~vyll~GeE~yli~~~~~~i~~~~~~~~~~~~-~~~~--~-~~----~~~i~~~~~t~pl-F~~--- 71 (328)
T PRK08487 4 KELDTLLKQNKLPNAFLLYGEDEFQIELYAKKISEKFKPENELKT-LYFD--E-YD----FEQAKDFLSQSSL-FGG--- 71 (328)
T ss_pred HHHHHHHhcCCCCceEEEecCchhHHHHHHHHHHHHhcCchHhhh-hchh--h-cc----HHHHHHHHhcccc-cCC---
Confidence 35667788876656 799999999998888888887643332211 2222 1 11 2345556777787 776
Q ss_pred eEEEEEeCCCCCCHHHHHHHHHHHHHhccCccEEEEeecccc---Cchhhhcc--ceEEEecCCChHHHHHHHHHHHHHc
Q 017884 142 VKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNK---IIPALQSR--CTRFRFAPLEPVHVTERLKHVIEAE 216 (364)
Q Consensus 142 ~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~---l~~~l~sr--~~~i~~~~~~~~~~~~~l~~~~~~~ 216 (364)
+++|++++.........+.|..+++.+++.+.+|++.....+ +.+.+... +..+.|.++++.++..|+..++++.
T Consensus 72 ~rlViv~~~~~~~~~~~~~L~~~l~~~~~~~~lv~~~~~~~k~kkl~k~~~~~k~~~~v~~~~~~~~~l~~~i~~~~~~~ 151 (328)
T PRK08487 72 KNLLIIKLDKKIPKKELKLLIELCEKNSDNYFIIELYGADSKTKDIEKLFQKKDEAVFVRFFKPNAREALELLQERAKEL 151 (328)
T ss_pred ceEEEEecccccCHHHHHHHHHHHhcCCCCEEEEEecCCcchhHHHHHHhccCCCceEEEeeCCCHHHHHHHHHHHHHHh
Confidence 899999988777776778899999998877766665433321 22333323 5689999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCchHHHHHhcCCCChHHHHHHHHHHHhccHHHHHHHHHHHHHhc
Q 017884 217 GLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRK 296 (364)
Q Consensus 217 ~~~i~~~~~~~l~~~~~g~~r~a~~~l~~~~~~~~~i~~~~v~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~l~~l~~~~ 296 (364)
|+.+++++++.|+..+++|+..+.++++++..+.+.||.++|..++..+.+.++|++++++..++ .++..+.++. ..
T Consensus 152 g~~i~~~a~~~L~~~~g~dl~~l~~ELeKL~ly~~~It~edV~~~v~~~~e~~vF~l~dai~~g~--~a~~~l~~L~-~~ 228 (328)
T PRK08487 152 GLDIDQNALNHLYFIHNEDLALAANELEKLAILNEPITLKDIQELVFGLGSVSFEDFFEKLLNKK--DIKDDLEKLL-EE 228 (328)
T ss_pred CCCCCHHHHHHHHHHhCcHHHHHHHHHHHHHHhcCCCCHHHHHHHhcccccccHHHHHHHHHCCC--cHHHHHHHHH-HC
Confidence 99999999999999999999999999999999988999999999999999999999999999988 4778888888 79
Q ss_pred CCCHHHHHHHHHHHHHhc------------------------------------CCChHHHHHHHHHHHHHHHHHhcCCC
Q 017884 297 GLALVDIVREVTMFVFKI------------------------------------KMPSDVRVRLMNDLADIEYRLSFGCN 340 (364)
Q Consensus 297 ~~~~~~i~~~l~~~~~~~------------------------------------~~~~~~~~~i~~~l~~~~~~l~~~~~ 340 (364)
|.+|..++..+.++++.+ +++...+..++..+.++|+.+|+|..
T Consensus 229 g~~pi~Il~~L~r~~~~L~~i~~~~~~~~~~~~a~~~~~~~~~f~~~~~~~q~~~~s~~~L~~~l~~L~e~D~~lK~g~~ 308 (328)
T PRK08487 229 GFNEIALLNSLERFFYQLFLFFAYIKINGKPDAKEILGYKPPKQIAENLAKQAIKIKEAQYKEIFELLLEWELELKTGQK 308 (328)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHhCCCCCHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHcCCC
Confidence 999999999998887654 44555678999999999999999964
Q ss_pred h--HHHHHHHHHHHHHHH
Q 017884 341 D--KLQLGSIISTFTQAR 356 (364)
Q Consensus 341 ~--~~~l~~l~~~l~~~~ 356 (364)
+ .+-++..+.+|...+
T Consensus 309 ~~~~~~~~~~~~~~~~~~ 326 (328)
T PRK08487 309 IDKNLFLLSTLIKIQKIL 326 (328)
T ss_pred ccHHHHHHHHHHHHHHHh
Confidence 3 444555577776554
No 79
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=99.90 E-value=8.2e-23 Score=166.98 Aligned_cols=140 Identities=36% Similarity=0.592 Sum_probs=110.5
Q ss_pred ccHHHHHHHHHHHhcCCCCc-EEEeCCCCccHHHHHHHHHHHHcCCCC------------------CCcEEEEeCCCC--
Q 017884 57 AHRDIVDTIDRLTSENRLPH-LLLYGPPGTGKTSTILAVARKLYGAQY------------------HNMILELNASDD-- 115 (364)
Q Consensus 57 g~~~~~~~l~~~~~~~~~~~-lll~G~~G~GKt~la~~l~~~l~~~~~------------------~~~~~~~~~~~~-- 115 (364)
||+.+++.|...+..++.|| ++|+||+|+||+++|..+++.++|... +.++..++....
T Consensus 1 gq~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~ 80 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKKK 80 (162)
T ss_dssp S-HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSSS
T ss_pred CcHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccccc
Confidence 78999999999999999999 799999999999999999999988643 456777766543
Q ss_pred -CChHHHHHHHHHHHhcCccccCCccceEEEEEeCCCCCCHHHHHHHHHHHHHhccCccEEEEeeccccCchhhhccceE
Q 017884 116 -RGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTR 194 (364)
Q Consensus 116 -~~~~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~l~~~l~sr~~~ 194 (364)
.+.+.+++.+.. ....+. . ++++|+|||++|.|+.+++++|+++||+||.++.||++|+++.++.++++|||+.
T Consensus 81 ~i~i~~ir~i~~~-~~~~~~-~---~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~~~~il~TI~SRc~~ 155 (162)
T PF13177_consen 81 SIKIDQIREIIEF-LSLSPS-E---GKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNNPSKILPTIRSRCQV 155 (162)
T ss_dssp SBSHHHHHHHHHH-CTSS-T-T---SSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-GGGS-HHHHTTSEE
T ss_pred hhhHHHHHHHHHH-HHHHHh-c---CCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECChHHChHHHHhhceE
Confidence 577888854444 444333 2 2599999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCC
Q 017884 195 FRFAPLE 201 (364)
Q Consensus 195 i~~~~~~ 201 (364)
+.|++++
T Consensus 156 i~~~~ls 162 (162)
T PF13177_consen 156 IRFRPLS 162 (162)
T ss_dssp EEE----
T ss_pred EecCCCC
Confidence 9998874
No 80
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=99.90 E-value=7.2e-21 Score=171.91 Aligned_cols=274 Identities=17% Similarity=0.194 Sum_probs=183.1
Q ss_pred HHHHHHHHHHhcCCCCc-EEEeCCCCccHHHHHHHHHHHHcCCCC--------------------CCcEEEEeCCC----
Q 017884 60 DIVDTIDRLTSENRLPH-LLLYGPPGTGKTSTILAVARKLYGAQY--------------------HNMILELNASD---- 114 (364)
Q Consensus 60 ~~~~~l~~~~~~~~~~~-lll~G~~G~GKt~la~~l~~~l~~~~~--------------------~~~~~~~~~~~---- 114 (364)
...+.+... .++.+| ++|+||+|+|||++|+.+++.+.|... +.++.+++...
T Consensus 8 ~~w~~l~~~--~~r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~ 85 (325)
T PRK08699 8 EQWRQIAEH--WERRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPE 85 (325)
T ss_pred HHHHHHHHh--cCCcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEeccccccc
Confidence 445555544 468888 899999999999999999999988532 35566776532
Q ss_pred ------CCChHHHHHHHHHHHhcCccccCCccceEEEEEeCCCCCCHHHHHHHHHHHHHhccCccEEEEeeccccCchhh
Q 017884 115 ------DRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPAL 188 (364)
Q Consensus 115 ------~~~~~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~l~~~l 188 (364)
..+++.+++.+... ...+. . ++++|++||+++.|+...++.|++++++++.++.||++|+.+..+.+++
T Consensus 86 ~g~~~~~I~id~iR~l~~~~-~~~p~-~---~~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti 160 (325)
T PRK08699 86 NGRKLLQIKIDAVREIIDNV-YLTSV-R---GGLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTI 160 (325)
T ss_pred ccccCCCcCHHHHHHHHHHH-hhCcc-c---CCceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHH
Confidence 24688888855444 33332 2 2589999999999999999999999999998888999999999999999
Q ss_pred hccceEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCchHHHHHhcCCCChH
Q 017884 189 QSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPK 268 (364)
Q Consensus 189 ~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~a~~~l~~~~~~~~~i~~~~v~~~~~~~~~~ 268 (364)
+|||+.+.|++++.+++..||... ++ +... ..+ ..++|.+..+... +... ..+.+...+......
T Consensus 161 ~SRc~~~~~~~~~~~~~~~~L~~~----~~--~~~~-~~l-~~~~g~p~~~~~~-~~~~------~r~~~~~~l~~~~~~ 225 (325)
T PRK08699 161 KSRCRKMVLPAPSHEEALAYLRER----GV--AEPE-ERL-AFHSGAPLFDEEP-ELRA------LRIKLLDILAEPRLL 225 (325)
T ss_pred HHHhhhhcCCCCCHHHHHHHHHhc----CC--CcHH-HHH-HHhCCChhhhcCc-hHHH------HHHHHHHHHHccChh
Confidence 999999999999999999999753 43 2221 223 4567777433210 0000 001111112222333
Q ss_pred HHHHHHHHHHhc--cHHHHHH----HHHHHHH-hcCCC---HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhcC
Q 017884 269 DIEQISYWLLNE--SFADSFK----RISEMKM-RKGLA---LVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFG 338 (364)
Q Consensus 269 ~~~~l~~~l~~~--~~~~~~~----~l~~l~~-~~~~~---~~~i~~~l~~~~~~~~~~~~~~~~i~~~l~~~~~~l~~~ 338 (364)
.+..+.+.+... +....+. ++.+++. ..+.. ..+....+..... +++...+..+++.+.+....+..+
T Consensus 226 ~~l~~~~~~~~~k~~~~~~l~~l~~~~rDll~~~~~~~~~~~~d~~~~l~~~a~--~~~~~~L~~~~~~l~~~~~~l~~n 303 (325)
T PRK08699 226 KILDYAALFDKEKLPLAVFVGWMQKWLVDLGLCLQHMKPVYYPAYEDRLLQTAS--GFRPRNVFAAEDMLKQLAPYGFHT 303 (325)
T ss_pred hHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHcCCCcccCHhHHHHHHHHHH--hcCHHHHHHHHHHHHHHHHHhhCC
Confidence 444555555432 2333333 3333331 11111 1122222222221 457888999999999999999999
Q ss_pred CChHHHHHHHHHHHHHHHH
Q 017884 339 CNDKLQLGSIISTFTQARS 357 (364)
Q Consensus 339 ~~~~~~l~~l~~~l~~~~~ 357 (364)
.|..+.++.++..+..+++
T Consensus 304 ~n~~L~le~lll~~~~~~~ 322 (325)
T PRK08699 304 LNVKMQIEHLLINYLELKK 322 (325)
T ss_pred CCHHHHHHHHHHHHHHHhc
Confidence 9999999999999987765
No 81
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=99.89 E-value=8.3e-21 Score=167.21 Aligned_cols=261 Identities=15% Similarity=0.250 Sum_probs=174.4
Q ss_pred ccHHHHHHHHHHHhcCCCCc-EEEeCCCCccHHHHHHHHHHHHcCCCC-------------------CCcEEEEeCC-CC
Q 017884 57 AHRDIVDTIDRLTSENRLPH-LLLYGPPGTGKTSTILAVARKLYGAQY-------------------HNMILELNAS-DD 115 (364)
Q Consensus 57 g~~~~~~~l~~~~~~~~~~~-lll~G~~G~GKt~la~~l~~~l~~~~~-------------------~~~~~~~~~~-~~ 115 (364)
.|+.++..|...+..++.+| ++|+|| .||+++|..+++.+.|.+. ++++..+... ..
T Consensus 6 ~q~~~~~~L~~~~~~~rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~i~p~~~~ 83 (290)
T PRK07276 6 KQPKVFQRFQTILEQDRLNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVIEPQGQV 83 (290)
T ss_pred HHHHHHHHHHHHHHcCCcceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeeeecCCCCc
Confidence 46788999999999999999 799996 6899999999999988641 3445555432 23
Q ss_pred CChHHHHHHHHHHHhcCccccCCccceEEEEEeCCCCCCHHHHHHHHHHHHHhccCccEEEEeeccccCchhhhccceEE
Q 017884 116 RGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRF 195 (364)
Q Consensus 116 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~l~~~l~sr~~~i 195 (364)
.+++.+++.+..+..+ |. . ++++|+|||++|.|+..+.|+|++++|+||+++.+|++|+++..+.++|+|||+.+
T Consensus 84 I~idqIR~l~~~~~~~-p~-~---~~~kV~II~~ad~m~~~AaNaLLKtLEEPp~~t~~iL~t~~~~~lLpTI~SRcq~i 158 (290)
T PRK07276 84 IKTDTIRELVKNFSQS-GY-E---GKQQVFIIKDADKMHVNAANSLLKVIEEPQSEIYIFLLTNDENKVLPTIKSRTQIF 158 (290)
T ss_pred CCHHHHHHHHHHHhhC-cc-c---CCcEEEEeehhhhcCHHHHHHHHHHhcCCCCCeEEEEEECChhhCchHHHHcceee
Confidence 5678888876666543 32 2 25899999999999999999999999999999999999999999999999999999
Q ss_pred EecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCchHHHHHhcCCCChHHHHHHHH
Q 017884 196 RFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISY 275 (364)
Q Consensus 196 ~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~a~~~l~~~~~~~~~i~~~~v~~~~~~~~~~~~~~l~~ 275 (364)
.|++ +.+++.+++.. .| ++.+....++..+ |+++.|+..++.-.... + ...+ ..+.+
T Consensus 159 ~f~~-~~~~~~~~L~~----~g--~~~~~a~~la~~~-~s~~~A~~l~~~~~~~~--~-~~~~------------~~~~~ 215 (290)
T PRK07276 159 HFPK-NEAYLIQLLEQ----KG--LLKTQAELLAKLA-QSTSEAEKLAQNKKFLE--L-IDQA------------ERFVT 215 (290)
T ss_pred eCCC-cHHHHHHHHHH----cC--CChHHHHHHHHHC-CCHHHHHHHhCChhHHH--H-HHHH------------HHHHH
Confidence 9976 67777777753 35 4555555555554 58999998873211100 0 0111 11111
Q ss_pred HHHhccHHHHHHHHHHHHH--hcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhcCCChHHHHHHHH
Q 017884 276 WLLNESFADSFKRISEMKM--RKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDKLQLGSII 349 (364)
Q Consensus 276 ~l~~~~~~~~~~~l~~l~~--~~~~~~~~i~~~l~~~~~~~~~~~~~~~~i~~~l~~~~~~l~~~~~~~~~l~~l~ 349 (364)
.+...+....+ .+.++.. .....-..++..+...++. ++........++.+.+.+.....+.|....++.++
T Consensus 216 ~l~~~~~~~~l-~~~~l~~~~~~~e~q~~~l~~l~~~~~~-~~~~~~~~~~L~~~~~~r~~w~~Nv~~~~~le~l~ 289 (290)
T PRK07276 216 ILLKDKDEAYL-QVARLVQLADEKEEQDQVLTLLTLLLAQ-ERMQVNVRTQLEAVYQARKMWQSNVSFQNALEYMV 289 (290)
T ss_pred HhccChHHHHH-HHHHHHHhhhcHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhHHHHHHhccCHHHHHHHHh
Confidence 11111111111 1111110 0001111222222222322 23445567778888889999999999999998875
No 82
>PRK05574 holA DNA polymerase III subunit delta; Reviewed
Probab=99.89 E-value=4.3e-20 Score=170.52 Aligned_cols=281 Identities=14% Similarity=0.192 Sum_probs=221.5
Q ss_pred HHHHHHhcCCCCcEEEeCCCCccHHHHHHHHHHHHcCCC-CCCcEEEEeCCCCCChHHHHHHHHHHHhcCccccCCccce
Q 017884 64 TIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ-YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASV 142 (364)
Q Consensus 64 ~l~~~~~~~~~~~lll~G~~G~GKt~la~~l~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 142 (364)
.+...+.++-.+.++|||+.-.-+...+..+.+.+...+ ...++..+++... .. +.+...+.+.++ |++ +
T Consensus 7 ~~~~~~~~~~~~~~li~G~d~~l~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~-~~----~~l~~~~~t~~l-F~~---~ 77 (340)
T PRK05574 7 QLEKQLKKGLAPLYLLYGDEPLLLQEAKDAIRAAARAQGFDERNVFTFDGSET-DW----DDVLEACQSLPL-FSD---R 77 (340)
T ss_pred HHHHHHhCCCCceEEEEcCcHHHHHHHHHHHHHHHHcCCCceeeEEEeecCCC-CH----HHHHHHhhccCc-ccc---C
Confidence 445556666333489999997777777777777654332 3445556655532 22 334455677776 765 8
Q ss_pred EEEEEeCCCCCCHHH----HHHHHHHHHHhccC--ccEEEEeeccc---cC---chhhhccceEEEecCCChHHHHHHHH
Q 017884 143 KLVLLDEADAMTKDA----QFALRRVIEKYTKN--TRFALICNQVN---KI---IPALQSRCTRFRFAPLEPVHVTERLK 210 (364)
Q Consensus 143 ~viiiDe~~~l~~~~----~~~L~~~le~~~~~--~~~Il~~~~~~---~l---~~~l~sr~~~i~~~~~~~~~~~~~l~ 210 (364)
++|+|++++.+.... ...+..++ +++++ ..+++.++..+ ++ .+.+.+++.++.|.+++..++..|+.
T Consensus 78 klvii~~~~~l~~~~~~~~l~~l~~~l-~~~~~~~~~li~~~~~~~~~~k~~k~~k~~~~~~~~~~~~~~~~~~~~~~i~ 156 (340)
T PRK05574 78 KLVELRLPEFLTGAKGEKALKRLEAYL-NPLPHPDLLLIVRLPKLDKAKKKSAWFKALKKKAVVVEAQPPKEAELPQWIQ 156 (340)
T ss_pred eEEEEECCCCCCchhHHHHHHHHHHhc-cCCCCCcEEEEEECCcCCHHHHhhHHHHHHHhCceEEEcCCCCHHHHHHHHH
Confidence 999999999997542 33344444 34443 33444443322 23 56777889999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhc--ccCchHHHHHhcCCCChHHHHHHHHHHHhccHHHHHHH
Q 017884 211 HVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMAS--QQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKR 288 (364)
Q Consensus 211 ~~~~~~~~~i~~~~~~~l~~~~~g~~r~a~~~l~~~~~~~--~~i~~~~v~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 288 (364)
..+++.|+.++++++++|++.++||+..+.+++++++.+. +.||.++|..++......++|.+++++..++...++..
T Consensus 157 ~~~~~~g~~i~~~a~~~L~~~~~~d~~~l~~El~KL~l~~~~~~It~~~I~~~i~~~~~~~~f~l~dai~~~~~~~a~~~ 236 (340)
T PRK05574 157 QRLKQQGLQIDAAALQLLAERVEGNLLALAQELEKLALLYPDGKITLEDVEEAVPDSARFDVFDLVDAILAGKIKRALRI 236 (340)
T ss_pred HHHHHcCCCCCHHHHHHHHHHhCchHHHHHHHHHHHHhhcCCCCCCHHHHHHHHhhhhcCCHHHHHHHHHCCCHHHHHHH
Confidence 9999999999999999999999999999999999999875 35999999999999889999999999999999999999
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhc-----------------------------------CCChHHHHHHHHHHHHHHH
Q 017884 289 ISEMKMRKGLALVDIVREVTMFVFKI-----------------------------------KMPSDVRVRLMNDLADIEY 333 (364)
Q Consensus 289 l~~l~~~~~~~~~~i~~~l~~~~~~~-----------------------------------~~~~~~~~~i~~~l~~~~~ 333 (364)
+..+. ..|.+|..++..+.++++.+ .++...+..+++.+.++|.
T Consensus 237 l~~l~-~~~~~~~~il~~l~~~~~~l~~~k~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~L~~~l~~L~~~d~ 315 (340)
T PRK05574 237 LDGLR-LEGEEPIKLLAALQREFRLLLQLKILSQQGYPLQQLAKELRVWPYRVKLALRALQRLSLKQLKQAIQLLAETDY 315 (340)
T ss_pred HHHHH-HCCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHcCCChhHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 99998 78999999999998888754 5677788999999999999
Q ss_pred HHhcCC--ChHHHHHHHHHHHHHH
Q 017884 334 RLSFGC--NDKLQLGSIISTFTQA 355 (364)
Q Consensus 334 ~l~~~~--~~~~~l~~l~~~l~~~ 355 (364)
++|+|. ++.+.++.++.++|..
T Consensus 316 ~iK~~~~~~~~~~le~~ii~l~~~ 339 (340)
T PRK05574 316 QIKTGYGGDKWLELELLLLKLAGA 339 (340)
T ss_pred HHhCCCCCCHHHHHHHHHHHhccC
Confidence 999994 9999999999999853
No 83
>TIGR01128 holA DNA polymerase III, delta subunit. subunit around DNA forming a DNA sliding clamp.
Probab=99.89 E-value=1.5e-20 Score=170.75 Aligned_cols=253 Identities=13% Similarity=0.170 Sum_probs=209.1
Q ss_pred HHHHHHHHcCCCC-CCcEEEEeCCCCCChHHHHHHHHHHHhcCccccCCccceEEEEEeCCCCCCH-HHHHHHHHHHHHh
Q 017884 91 ILAVARKLYGAQY-HNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTK-DAQFALRRVIEKY 168 (364)
Q Consensus 91 a~~l~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~~-~~~~~L~~~le~~ 168 (364)
+.++...+...++ ..+++.+++.+. ..+. +...+.+.++ |+. +++++|++++.+.. ...+.|.++++++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~e~-~~~~----l~~~~~~~sl-f~~---~kliii~~~~~~~~~~~~~~L~~~l~~~ 74 (302)
T TIGR01128 4 ADAIRAAALAQGFDEFNVFRIDGEEF-DWNQ----LLEEAQTLPL-FSE---RRLVELRNPEGKPGAKGLKALEEYLANP 74 (302)
T ss_pred HHHHHHHHHhCCCchheeeeeccCCC-CHHH----HHHHhhccCc-ccC---CeEEEEECCCCCCCHHHHHHHHHHHhcC
Confidence 4555555544333 456666665542 2222 4555666666 664 89999999999874 5678999999999
Q ss_pred ccCccEEEEeecccc---Cchhhh--ccceEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHH
Q 017884 169 TKNTRFALICNQVNK---IIPALQ--SRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNIL 243 (364)
Q Consensus 169 ~~~~~~Il~~~~~~~---l~~~l~--sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~a~~~l 243 (364)
++++.+|++++..++ +.+.+. ++|.++.|.+++..++..|+...+++.|+.++++++++|+..++||++.+.+++
T Consensus 75 ~~~~~~i~~~~~~~~~~~~~k~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~g~~i~~~a~~~l~~~~~~d~~~l~~el 154 (302)
T TIGR01128 75 PPDTLLLIEAPKLDKRKKLTKWLKALKNAQIVECKTPKEQELPRWIQARLKKLGLRIDPDAVQLLAELVEGNLLAIAQEL 154 (302)
T ss_pred CCCEEEEEecCCCCHhHHHHHHHHHhcCeeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCcHHHHHHHHH
Confidence 988888888864432 223343 489999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhc--ccCchHHHHHhcCCCChHHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc-------
Q 017884 244 QSTHMAS--QQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKI------- 314 (364)
Q Consensus 244 ~~~~~~~--~~i~~~~v~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~~~~------- 314 (364)
++++.+. +.||.++|..++......+++++++++..++...++..++.+. ..|.+|..++..+.++++.+
T Consensus 155 ~KL~~~~~~~~It~e~I~~~~~~~~~~~if~l~dal~~~~~~~a~~~l~~l~-~~~~~~~~il~~l~~~~~~L~~~k~~~ 233 (302)
T TIGR01128 155 EKLALYAPDGKITLEDVEEAVSDSARFNVFDLTDALLEGKAARALRILKGLL-GEGEEPLILLALLQRQLRLLLQLKRLA 233 (302)
T ss_pred HHHHhhCCCCCCCHHHHHHHHhhhhcCCHHHHHHHHHCCCHHHHHHHHHHHH-HCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999874 4799999999999888899999999999999999999999988 88999999999998888765
Q ss_pred ----------------------------CCChHHHHHHHHHHHHHHHHHh-cC-CChHHHHHHHHHHHH
Q 017884 315 ----------------------------KMPSDVRVRLMNDLADIEYRLS-FG-CNDKLQLGSIISTFT 353 (364)
Q Consensus 315 ----------------------------~~~~~~~~~i~~~l~~~~~~l~-~~-~~~~~~l~~l~~~l~ 353 (364)
.++.+.+..++..+.++|..+| +| .++.+.+|.++.++|
T Consensus 234 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~s~~~L~~~l~~l~~~d~~~K~~~~~~~~~~le~~i~~~~ 302 (302)
T TIGR01128 234 QQGGPLAQLASKLGIWPYRRKLALKALRRLSLAKLEQALQELAEADLQLKGTGGGDPWLALERLLLKLA 302 (302)
T ss_pred HcCCCHHHHHHHcCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCcCCCCHHHHHHHHHHHhC
Confidence 4567778899999999999999 45 599999999999886
No 84
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.88 E-value=3.1e-21 Score=167.75 Aligned_cols=209 Identities=14% Similarity=0.188 Sum_probs=153.2
Q ss_pred CCChhhccCCC-CCcchh--ccHHHHHHHHHHHhcCCCCcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCCC
Q 017884 40 ASPWVEKYRPQ-SLADVA--AHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDR 116 (364)
Q Consensus 40 ~~~~~~~~~p~-~~~~~v--g~~~~~~~l~~~~~~~~~~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~ 116 (364)
+.|+.-.+.|. +|++++ ++..++..+.++......++++||||+|+|||++++++++.+...+....++.++....
T Consensus 8 Ql~l~~~~~~~~~fd~f~~~~n~~a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~~~- 86 (235)
T PRK08084 8 QLSLPLYLPDDETFASFYPGDNDSLLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKRAW- 86 (235)
T ss_pred ceecCCCCCCcCCccccccCccHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHHhh-
Confidence 45554344443 678887 36778888888887666667999999999999999999998765443333333322111
Q ss_pred ChHHHHHHHHHHHhcCccccCCccceEEEEEeCCCCCC--HHHHHHHHHHHHHhcc--CccEEEEeeccc----cCchhh
Q 017884 117 GIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMT--KDAQFALRRVIEKYTK--NTRFALICNQVN----KIIPAL 188 (364)
Q Consensus 117 ~~~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~--~~~~~~L~~~le~~~~--~~~~Il~~~~~~----~l~~~l 188 (364)
...+.++.+ . ...+++|||++.+. +..+..|+.++..... ...+|++++.+. .+.+.|
T Consensus 87 ---~~~~~~~~~--------~---~~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L 152 (235)
T PRK08084 87 ---FVPEVLEGM--------E---QLSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDL 152 (235)
T ss_pred ---hhHHHHHHh--------h---hCCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHH
Confidence 111111111 1 24599999999996 4456677777776543 346788876543 357899
Q ss_pred hccc---eEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHh----cccCchHHHHHh
Q 017884 189 QSRC---TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMA----SQQITEEAVYLC 261 (364)
Q Consensus 189 ~sr~---~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~a~~~l~~~~~~----~~~i~~~~v~~~ 261 (364)
+||+ .++.+.+|+.+++.+++++.+..+|+.++++++++|++.++||+|.+.+.++.+... ..+||.+.++++
T Consensus 153 ~SRl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~~l~~~v~~~L~~~~~~d~r~l~~~l~~l~~~~l~~~~~it~~~~k~~ 232 (235)
T PRK08084 153 ASRLDWGQIYKLQPLSDEEKLQALQLRARLRGFELPEDVGRFLLKRLDREMRTLFMTLDQLDRASITAQRKLTIPFVKEI 232 (235)
T ss_pred HHHHhCCceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 9998 899999999999999999989989999999999999999999999999999886522 357888888776
Q ss_pred cC
Q 017884 262 TG 263 (364)
Q Consensus 262 ~~ 263 (364)
++
T Consensus 233 l~ 234 (235)
T PRK08084 233 LK 234 (235)
T ss_pred Hc
Confidence 53
No 85
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.87 E-value=8e-20 Score=176.99 Aligned_cols=296 Identities=18% Similarity=0.192 Sum_probs=189.3
Q ss_pred hhccCCCCCcchhccHHHHHHHHHHHh----cCCCCc-EEEeCCCCccHHHHHHHHHHHHcCC----C-CCCcEEEEeCC
Q 017884 44 VEKYRPQSLADVAAHRDIVDTIDRLTS----ENRLPH-LLLYGPPGTGKTSTILAVARKLYGA----Q-YHNMILELNAS 113 (364)
Q Consensus 44 ~~~~~p~~~~~~vg~~~~~~~l~~~~~----~~~~~~-lll~G~~G~GKt~la~~l~~~l~~~----~-~~~~~~~~~~~ 113 (364)
...|.| +.++|+++.+..|...+. +....+ ++|+|+||+|||++++.+.+++... . ..+.++++|+.
T Consensus 749 ~~DYVP---D~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm 825 (1164)
T PTZ00112 749 QLDVVP---KYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGM 825 (1164)
T ss_pred CcccCC---CcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCC
Confidence 334556 678999999887766654 333334 5799999999999999999887421 2 23678899986
Q ss_pred CCCChHHHHHHHHHHH-hcCccc-----------c----CCccceEEEEEeCCCCCCHHHHHHHHHHHHHhc---cCccE
Q 017884 114 DDRGIDVVRQQIQDFA-STQSFS-----------F----GVKASVKLVLLDEADAMTKDAQFALRRVIEKYT---KNTRF 174 (364)
Q Consensus 114 ~~~~~~~~~~~i~~~~-~~~~~~-----------~----~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~---~~~~~ 174 (364)
.......+...+.... ...+.. | .......||+|||+|.|....++.|+.+++.+. ..+.+
T Consensus 826 ~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiL 905 (1164)
T PTZ00112 826 NVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVL 905 (1164)
T ss_pred ccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEE
Confidence 6444433322222111 111100 0 011124599999999998777888888888653 23445
Q ss_pred EEEeec---cccCchhhhccce--EEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHH---HcCCCHHHHHHHHHHH
Q 017884 175 ALICNQ---VNKIIPALQSRCT--RFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVR---LCNGDMRKALNILQST 246 (364)
Q Consensus 175 Il~~~~---~~~l~~~l~sr~~--~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~---~~~g~~r~a~~~l~~~ 246 (364)
|.++|. +..+.+.+++|+. .+.|+|++.+++.++|..++......+++++++++|+ ..+||+|.|+++|..+
T Consensus 906 IGISNdlDLperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrA 985 (1164)
T PTZ00112 906 IAISNTMDLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKA 985 (1164)
T ss_pred EEecCchhcchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHH
Confidence 566654 4567788999974 4899999999999999999986555689999999998 5679999999999877
Q ss_pred HHhc--ccCchHHHHHhcCCCChHHHHHHHHHHHhccHHH---HHHHHHHHHHhc---CCCHHHHHHHHHHHHH----hc
Q 017884 247 HMAS--QQITEEAVYLCTGNPLPKDIEQISYWLLNESFAD---SFKRISEMKMRK---GLALVDIVREVTMFVF----KI 314 (364)
Q Consensus 247 ~~~~--~~i~~~~v~~~~~~~~~~~~~~l~~~l~~~~~~~---~~~~l~~l~~~~---~~~~~~i~~~l~~~~~----~~ 314 (364)
.... ..|+.++|.++........+ .+.+..-.+.. .+.++..+. .. .....+|+..+...+. .+
T Consensus 986 gEikegskVT~eHVrkAleeiE~srI---~e~IktLPlHqKLVLlALIlLlk-~tg~~~i~TGEVYerYk~Lce~~Gk~i 1061 (1164)
T PTZ00112 986 FENKRGQKIVPRDITEATNQLFDSPL---TNAINYLPWPFKMFLTCLIVELR-MLNDFIIPYKKVLNRYKVLVETSGKYI 1061 (1164)
T ss_pred HhhcCCCccCHHHHHHHHHHHHhhhH---HHHHHcCCHHHHHHHHHHHHHHh-hcCCCceeHHHHHHHHHHHHHhhhhhc
Confidence 6532 37888999888754433333 33333333333 222222222 21 2445566655555554 34
Q ss_pred CCChHHHHHHHHHHHHHHHHHhcCCChHHHHHH
Q 017884 315 KMPSDVRVRLMNDLADIEYRLSFGCNDKLQLGS 347 (364)
Q Consensus 315 ~~~~~~~~~i~~~l~~~~~~l~~~~~~~~~l~~ 347 (364)
+..+... ++.+.+.+++..=..-..+.+-|+.
T Consensus 1062 Gv~plTq-RV~d~L~eL~~LGIIl~ep~~~~~~ 1093 (1164)
T PTZ00112 1062 GMCSNNE-LFKIMLDKLVKMGILLIRPYIPLES 1093 (1164)
T ss_pred CCCCcHH-HHHHHHHHHHhcCeEEecCCCchhh
Confidence 4555544 6777777776533333345554444
No 86
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.86 E-value=6.7e-21 Score=184.18 Aligned_cols=211 Identities=22% Similarity=0.388 Sum_probs=141.0
Q ss_pred CCCCChhhccCCCCCcchhccHHHHHHHHHHHhcCCCCc-----EEEeCCCCccHHHHHHHHHHHHcCCCCCC-cEE-EE
Q 017884 38 IKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPH-----LLLYGPPGTGKTSTILAVARKLYGAQYHN-MIL-EL 110 (364)
Q Consensus 38 ~~~~~~~~~~~p~~~~~~vg~~~~~~~l~~~~~~~~~~~-----lll~G~~G~GKt~la~~l~~~l~~~~~~~-~~~-~~ 110 (364)
+...||++||||.++++++||++.+..++.++.....++ ++|+||+|+|||++++.+++.+......+ +.+ ..
T Consensus 69 ~~~~pW~eKyrP~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~npv~~~ 148 (637)
T TIGR00602 69 DGNEPWVEKYKPETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELGIQVQEWSNPTLPD 148 (637)
T ss_pred cccCchHHHhCCCCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHhhhhhhc
Confidence 456899999999999999999999999999998654333 89999999999999999999874321000 000 00
Q ss_pred eCCC---------------CCChHHHHHHHHHHHhcCccccC--CccceEEEEEeCCCCCCHHHHHHHHHHHH-Hh--cc
Q 017884 111 NASD---------------DRGIDVVRQQIQDFASTQSFSFG--VKASVKLVLLDEADAMTKDAQFALRRVIE-KY--TK 170 (364)
Q Consensus 111 ~~~~---------------~~~~~~~~~~i~~~~~~~~~~~~--~~~~~~viiiDe~~~l~~~~~~~L~~~le-~~--~~ 170 (364)
.... ....+.+...+......... .+ ....++||+|||++.+.......+..++. .+ ..
T Consensus 149 ~~~~~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~-~g~~~~~~~~IILIDEiPn~~~r~~~~lq~lLr~~~~e~~ 227 (637)
T TIGR00602 149 FQKNDHKVTLSLESCFSNFQSQIEVFSEFLLRATNKLQM-LGDDLMTDKKIILVEDLPNQFYRDTRALHEILRWKYVSIG 227 (637)
T ss_pred ccccccccchhhhhccccccchHHHHHHHHHHHHhhhcc-cccccCCceeEEEeecchhhchhhHHHHHHHHHHHhhcCC
Confidence 0000 11223333333332211111 10 12258899999997776433333333333 12 23
Q ss_pred CccEEEEeeccc--------c-------Cchhhhc--cceEEEecCCChHHHHHHHHHHHHHcCCC------C-CHHHHH
Q 017884 171 NTRFALICNQVN--------K-------IIPALQS--RCTRFRFAPLEPVHVTERLKHVIEAEGLD------V-TEGGLA 226 (364)
Q Consensus 171 ~~~~Il~~~~~~--------~-------l~~~l~s--r~~~i~~~~~~~~~~~~~l~~~~~~~~~~------i-~~~~~~ 226 (364)
.+.+|++++... . +.+.+.+ |+.++.|.|+...++.+.|..++..++.. + +++++.
T Consensus 228 ~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv~~I~FnPia~t~l~K~L~rIl~~E~~~~~~~~~~p~~~~l~ 307 (637)
T TIGR00602 228 RCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRVSNISFNPIAPTIMKKFLNRIVTIEAKKNGEKIKVPKKTSVE 307 (637)
T ss_pred CceEEEEecCCccccccccccccchhcccCHhHhcccceeEEEeCCCCHHHHHHHHHHHHHhhhhccccccccCCHHHHH
Confidence 455677665211 1 2267877 56779999999999999999999876432 2 468899
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHh
Q 017884 227 ALVRLCNGDMRKALNILQSTHMA 249 (364)
Q Consensus 227 ~l~~~~~g~~r~a~~~l~~~~~~ 249 (364)
.|+..++||+|.|++.||.++..
T Consensus 308 ~I~~~s~GDiRsAIn~LQf~~~~ 330 (637)
T TIGR00602 308 LLCQGCSGDIRSAINSLQFSSSK 330 (637)
T ss_pred HHHHhCCChHHHHHHHHHHHHhc
Confidence 99999999999999999987653
No 87
>PRK08727 hypothetical protein; Validated
Probab=99.86 E-value=5.1e-20 Score=159.89 Aligned_cols=209 Identities=20% Similarity=0.287 Sum_probs=149.1
Q ss_pred CCChhhccCCC-CCcchhccH-HHHHHHHHHHhcCCCCcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCCCC
Q 017884 40 ASPWVEKYRPQ-SLADVAAHR-DIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRG 117 (364)
Q Consensus 40 ~~~~~~~~~p~-~~~~~vg~~-~~~~~l~~~~~~~~~~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~ 117 (364)
+.|+--.++|. +|+++++.+ +....+.....+.....++|+||+|+|||+++++++..+...+. .+..++....
T Consensus 5 Ql~l~~~~~~~~~f~~f~~~~~n~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~~--~~~y~~~~~~-- 80 (233)
T PRK08727 5 QLPLALRYPSDQRFDSYIAAPDGLLAQLQALAAGQSSDWLYLSGPAGTGKTHLALALCAAAEQAGR--SSAYLPLQAA-- 80 (233)
T ss_pred CccccCCCCCcCChhhccCCcHHHHHHHHHHHhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCC--cEEEEeHHHh--
Confidence 45555555554 788887754 44444444444333344999999999999999999999765544 3334433221
Q ss_pred hHHHHHHHHHHHhcCccccCCccceEEEEEeCCCCCC--HHHHHHHHHHHHHhcc-CccEEEEeeccc----cCchhhhc
Q 017884 118 IDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMT--KDAQFALRRVIEKYTK-NTRFALICNQVN----KIIPALQS 190 (364)
Q Consensus 118 ~~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~--~~~~~~L~~~le~~~~-~~~~Il~~~~~~----~l~~~l~s 190 (364)
...+.+.+..+ . ...+|+|||++.+. +..+..++++++.... ...+|++++.+. .+.+.++|
T Consensus 81 ~~~~~~~~~~l--------~---~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~S 149 (233)
T PRK08727 81 AGRLRDALEAL--------E---GRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRS 149 (233)
T ss_pred hhhHHHHHHHH--------h---cCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHH
Confidence 11122222211 1 35699999999996 4456778888876443 345788876433 35689999
Q ss_pred c---ceEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHH----hcccCchHHHHHhcC
Q 017884 191 R---CTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHM----ASQQITEEAVYLCTG 263 (364)
Q Consensus 191 r---~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~a~~~l~~~~~----~~~~i~~~~v~~~~~ 263 (364)
| |.++.|++|+.+++..+++.++..+++.++++++++|++.++||+|.+++.++.+.. ....||.+.+++++.
T Consensus 150 Rl~~~~~~~l~~~~~e~~~~iL~~~a~~~~l~l~~e~~~~La~~~~rd~r~~l~~L~~l~~~~~~~~~~it~~~~~~~l~ 229 (233)
T PRK08727 150 RLAQCIRIGLPVLDDVARAAVLRERAQRRGLALDEAAIDWLLTHGERELAGLVALLDRLDRESLAAKRRVTVPFLRRVLE 229 (233)
T ss_pred HHhcCceEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHh
Confidence 9 789999999999999999999999999999999999999999999999998887653 234677777776654
No 88
>PRK06893 DNA replication initiation factor; Validated
Probab=99.86 E-value=4e-20 Score=160.19 Aligned_cols=201 Identities=16% Similarity=0.250 Sum_probs=141.6
Q ss_pred CCCCCcchhccHHHHH--HHHHHHhcCCCCcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCCCChHHHHHHH
Q 017884 48 RPQSLADVAAHRDIVD--TIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQI 125 (364)
Q Consensus 48 ~p~~~~~~vg~~~~~~--~l~~~~~~~~~~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i 125 (364)
.+.+|++++++++... .+.........|.++||||||+|||++++++++++...+....++..+...... .+.+
T Consensus 11 ~~~~fd~f~~~~~~~~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~~~~----~~~~ 86 (229)
T PRK06893 11 DDETLDNFYADNNLLLLDSLRKNFIDLQQPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQYFS----PAVL 86 (229)
T ss_pred CcccccccccCChHHHHHHHHHHhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhhhhh----HHHH
Confidence 3468999997654432 233333344445589999999999999999999986555444444433211111 1111
Q ss_pred HHHHhcCccccCCccceEEEEEeCCCCCC--HHHHHHHHHHHHHhccC-cc-EEEEeecc-c---cCchhhhccce---E
Q 017884 126 QDFASTQSFSFGVKASVKLVLLDEADAMT--KDAQFALRRVIEKYTKN-TR-FALICNQV-N---KIIPALQSRCT---R 194 (364)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~viiiDe~~~l~--~~~~~~L~~~le~~~~~-~~-~Il~~~~~-~---~l~~~l~sr~~---~ 194 (364)
.. +. +..+++|||++.+. ...+..|+.+++..... .. +|++++.. . ...+.++||+. +
T Consensus 87 ~~--------~~---~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~ 155 (229)
T PRK06893 87 EN--------LE---QQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEI 155 (229)
T ss_pred hh--------cc---cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCe
Confidence 11 11 36799999999985 34456788888765443 23 44555432 2 24478999974 8
Q ss_pred EEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHh----cccCchHHHHHhcC
Q 017884 195 FRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMA----SQQITEEAVYLCTG 263 (364)
Q Consensus 195 i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~a~~~l~~~~~~----~~~i~~~~v~~~~~ 263 (364)
+.+++|+.++..+++++.+...++.++++++++|++.++||+|.+.+.++.+... ..+||...++++++
T Consensus 156 ~~l~~pd~e~~~~iL~~~a~~~~l~l~~~v~~~L~~~~~~d~r~l~~~l~~l~~~~~~~~~~it~~~v~~~L~ 228 (229)
T PRK06893 156 YQLNDLTDEQKIIVLQRNAYQRGIELSDEVANFLLKRLDRDMHTLFDALDLLDKASLQAQRKLTIPFVKEILG 228 (229)
T ss_pred eeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999876422 24688888877653
No 89
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.85 E-value=6.8e-19 Score=164.08 Aligned_cols=287 Identities=16% Similarity=0.218 Sum_probs=176.7
Q ss_pred CChhhccCCCCCcchhccHHHHHHHHHHHhc----CCCCcEEEeCCCCccHHHHHHHHHHHHcCCC----CCCcEEEEeC
Q 017884 41 SPWVEKYRPQSLADVAAHRDIVDTIDRLTSE----NRLPHLLLYGPPGTGKTSTILAVARKLYGAQ----YHNMILELNA 112 (364)
Q Consensus 41 ~~~~~~~~p~~~~~~vg~~~~~~~l~~~~~~----~~~~~lll~G~~G~GKt~la~~l~~~l~~~~----~~~~~~~~~~ 112 (364)
.++...|.|. +++|++..++.|..++.. +..++++|+||||+|||++++.+++.+.... ....++++++
T Consensus 6 ~~l~~~~~p~---~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~ 82 (365)
T TIGR02928 6 DLLEPDYVPD---RIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNC 82 (365)
T ss_pred hhCCCCCCCC---CCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEEC
Confidence 3456778885 689999999888777753 4445699999999999999999999875321 2256778887
Q ss_pred CCCCChHHHH-HHHHHHHh--c-Ccc---c-----------cCCccceEEEEEeCCCCCCHHHHHHHHHHHHH-----hc
Q 017884 113 SDDRGIDVVR-QQIQDFAS--T-QSF---S-----------FGVKASVKLVLLDEADAMTKDAQFALRRVIEK-----YT 169 (364)
Q Consensus 113 ~~~~~~~~~~-~~i~~~~~--~-~~~---~-----------~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~-----~~ 169 (364)
........+. ........ . .+. . ......+.||+|||+|.+....+..|..++.. .+
T Consensus 83 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~ 162 (365)
T TIGR02928 83 QILDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLD 162 (365)
T ss_pred CCCCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCC
Confidence 6644433222 22222210 0 000 0 00112467999999999953333333333322 22
Q ss_pred -cCccEEEEeeccc---cCchhhhccc--eEEEecCCChHHHHHHHHHHHHH--cCCCCCHHHHHHHHHH---cCCCHHH
Q 017884 170 -KNTRFALICNQVN---KIIPALQSRC--TRFRFAPLEPVHVTERLKHVIEA--EGLDVTEGGLAALVRL---CNGDMRK 238 (364)
Q Consensus 170 -~~~~~Il~~~~~~---~l~~~l~sr~--~~i~~~~~~~~~~~~~l~~~~~~--~~~~i~~~~~~~l~~~---~~g~~r~ 238 (364)
..+.+|+++|.+. .+.+.+.+|+ ..+.|+|++.+++.+++..++.. .+..+++++++.++.. ++||+|.
T Consensus 163 ~~~v~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~ 242 (365)
T TIGR02928 163 NAKVGVIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARK 242 (365)
T ss_pred CCeEEEEEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHH
Confidence 4566788887664 5777888887 57999999999999999999863 2335788887776554 4799999
Q ss_pred HHHHHHHHHHhc-----ccCchHHHHHhcCCCChHHHHHHHHHHHhccHHHH--HHHHHHHHH--hcCCCHHHHHHHHHH
Q 017884 239 ALNILQSTHMAS-----QQITEEAVYLCTGNPLPKDIEQISYWLLNESFADS--FKRISEMKM--RKGLALVDIVREVTM 309 (364)
Q Consensus 239 a~~~l~~~~~~~-----~~i~~~~v~~~~~~~~~~~~~~l~~~l~~~~~~~~--~~~l~~l~~--~~~~~~~~i~~~l~~ 309 (364)
+++.+..+...+ ..|+.++|..+....... .+.+.+..-+.... +..+..+.. .......+++.....
T Consensus 243 al~~l~~a~~~a~~~~~~~it~~~v~~a~~~~~~~---~~~~~i~~l~~~~~~~l~ai~~~~~~~~~~~~~~~~~~~y~~ 319 (365)
T TIGR02928 243 AIDLLRVAGEIAEREGAERVTEDHVEKAQEKIEKD---RLLELIRGLPTHSKLVLLAIANLAANDEDPFRTGEVYEVYKE 319 (365)
T ss_pred HHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHH---HHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHH
Confidence 999998765432 469999998776544222 22333333333332 333333321 122344555554444
Q ss_pred HHHhcCCChHHHHHHHHHHHHHHH
Q 017884 310 FVFKIKMPSDVRVRLMNDLADIEY 333 (364)
Q Consensus 310 ~~~~~~~~~~~~~~i~~~l~~~~~ 333 (364)
.....+..+....++.+.+.+++.
T Consensus 320 ~~~~~~~~~~~~~~~~~~l~~l~~ 343 (365)
T TIGR02928 320 VCEDIGVDPLTQRRISDLLNELDM 343 (365)
T ss_pred HHHhcCCCCCcHHHHHHHHHHHHh
Confidence 444445444555555555555543
No 90
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.84 E-value=1.3e-19 Score=157.54 Aligned_cols=198 Identities=15% Similarity=0.234 Sum_probs=148.3
Q ss_pred CCCCCcchhc--cHHHHHHHHHHHhcC-CCCcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCCCChHHHHHH
Q 017884 48 RPQSLADVAA--HRDIVDTIDRLTSEN-RLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQ 124 (364)
Q Consensus 48 ~p~~~~~~vg--~~~~~~~l~~~~~~~-~~~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (364)
+|.+|+++++ ...++..++.+.... ...+++|+||+|+|||++++++++.....+. .+..+++.... ..
T Consensus 13 ~~~~~d~f~~~~~~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~--~~~~i~~~~~~------~~ 84 (227)
T PRK08903 13 PPPTFDNFVAGENAELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADASYGGR--NARYLDAASPL------LA 84 (227)
T ss_pred ChhhhcccccCCcHHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCC--cEEEEehHHhH------HH
Confidence 4567888883 467777888877643 3345999999999999999999998755443 34444443311 11
Q ss_pred HHHHHhcCccccCCccceEEEEEeCCCCCCHHHHHHHHHHHHHhccCcc--EEEEeeccc---cCchhhhccc---eEEE
Q 017884 125 IQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTR--FALICNQVN---KIIPALQSRC---TRFR 196 (364)
Q Consensus 125 i~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~--~Il~~~~~~---~l~~~l~sr~---~~i~ 196 (364)
+ . +.. ...+++|||+|.++...+..|+.+++....... +|++++... .+.+.+.+|+ ..+.
T Consensus 85 ~-------~--~~~--~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~ 153 (227)
T PRK08903 85 F-------D--FDP--EAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVYE 153 (227)
T ss_pred H-------h--hcc--cCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEE
Confidence 1 0 111 367999999999998889999999987554433 555554322 3457788784 7899
Q ss_pred ecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHh----cccCchHHHHHhcCC
Q 017884 197 FAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMA----SQQITEEAVYLCTGN 264 (364)
Q Consensus 197 ~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~a~~~l~~~~~~----~~~i~~~~v~~~~~~ 264 (364)
++||+.++...++...+.+.++.++++++++|++.++||++.+.+.++.+..+ ...||...++++++.
T Consensus 154 l~pl~~~~~~~~l~~~~~~~~v~l~~~al~~L~~~~~gn~~~l~~~l~~l~~~~~~~~~~i~~~~~~~~l~~ 225 (227)
T PRK08903 154 LKPLSDADKIAALKAAAAERGLQLADEVPDYLLTHFRRDMPSLMALLDALDRYSLEQKRPVTLPLLREMLAQ 225 (227)
T ss_pred ecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHhc
Confidence 99999999999999999899999999999999999999999999999876543 357999888887653
No 91
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=99.84 E-value=3.7e-19 Score=152.66 Aligned_cols=160 Identities=19% Similarity=0.188 Sum_probs=124.8
Q ss_pred CCc-EEEeCCCCccHHHHHHHHHHHHcCCC-----------------CCCcEEEEeCC-CCCChHHHHHHHHHHHhcCcc
Q 017884 74 LPH-LLLYGPPGTGKTSTILAVARKLYGAQ-----------------YHNMILELNAS-DDRGIDVVRQQIQDFASTQSF 134 (364)
Q Consensus 74 ~~~-lll~G~~G~GKt~la~~l~~~l~~~~-----------------~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~ 134 (364)
.|| ++|+||+|+||..+|.++++.+.|.. .++++..+... ...+++.+++....+... ++
T Consensus 6 ~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~-s~ 84 (261)
T PRK05818 6 KTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRP-SV 84 (261)
T ss_pred CCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccC-ch
Confidence 466 89999999999999999999998863 23344443322 235678888766665432 21
Q ss_pred ccCCccceEEEEEeCCCCCCHHHHHHHHHHHHHhccCccEEEEeeccccCchhhhccceEEEecCC----------ChHH
Q 017884 135 SFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPL----------EPVH 204 (364)
Q Consensus 135 ~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~l~~~l~sr~~~i~~~~~----------~~~~ 204 (364)
..++++|++|+++|.|+..+.++|++++|+||+++.||++|+.++.+.++++|||+.+.|+++ ++.+
T Consensus 85 ---e~~~~KV~II~~ae~m~~~AaNaLLK~LEEPp~~t~fiLit~~~~~lLpTI~SRCq~~~~~~~~~~~~~~~~~~~~~ 161 (261)
T PRK05818 85 ---ESNGKKIYIIYGIEKLNKQSANSLLKLIEEPPKNTYGIFTTRNENNILNTILSRCVQYVVLSKEKKVPFKVESNDRY 161 (261)
T ss_pred ---hcCCCEEEEeccHhhhCHHHHHHHHHhhcCCCCCeEEEEEECChHhCchHhhhheeeeecCChhhhcccccccChHH
Confidence 112589999999999999999999999999999999999999999999999999999999888 5555
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Q 017884 205 VTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQST 246 (364)
Q Consensus 205 ~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~a~~~l~~~ 246 (364)
+.+++... . .+++ .++..++|++.+++..++.+
T Consensus 162 i~~~L~~~---~--~~d~----~i~~~a~g~~~~a~~l~~~l 194 (261)
T PRK05818 162 FQYILLSF---Y--SVDE----QLQAYNNGSFSKLKNIIETL 194 (261)
T ss_pred HHHHHHHc---c--CccH----HHHHHcCCCHHHHHHHHHHH
Confidence 55555432 1 2444 67777899999999998854
No 92
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.84 E-value=2.2e-18 Score=162.24 Aligned_cols=288 Identities=18% Similarity=0.266 Sum_probs=181.1
Q ss_pred ChhhccCCCCCcchhccHHHHHHHHHHHh----cCCCCcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCCCC
Q 017884 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTS----ENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRG 117 (364)
Q Consensus 42 ~~~~~~~p~~~~~~vg~~~~~~~l~~~~~----~~~~~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~ 117 (364)
++...|.| +.++|+++.++.|...+. ++..++++|+||||+|||++++.+++.+........++++++.....
T Consensus 22 ~l~~~~~P---~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~ 98 (394)
T PRK00411 22 VLEPDYVP---ENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRT 98 (394)
T ss_pred hCCCCCcC---CCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCC
Confidence 34445555 568899999888877764 33445699999999999999999999886554456777888765433
Q ss_pred hHHHH-HHHHHHHh-cCcc-c-------------cCCccceEEEEEeCCCCCC----HHHHHHHHHHHHHhcc-CccEEE
Q 017884 118 IDVVR-QQIQDFAS-TQSF-S-------------FGVKASVKLVLLDEADAMT----KDAQFALRRVIEKYTK-NTRFAL 176 (364)
Q Consensus 118 ~~~~~-~~i~~~~~-~~~~-~-------------~~~~~~~~viiiDe~~~l~----~~~~~~L~~~le~~~~-~~~~Il 176 (364)
...+. ........ ..+. . ....+.+.||+|||+|.+. .+....|++.++..+. ++.+|+
T Consensus 99 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~~~~~v~vI~ 178 (394)
T PRK00411 99 RYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEYPGARIGVIG 178 (394)
T ss_pred HHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhccCCCeEEEEE
Confidence 22222 21221111 0000 0 0111235799999999996 3344555555554433 455788
Q ss_pred Eeeccc---cCchhhhccc--eEEEecCCChHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHc---CCCHHHHHHHHHHH
Q 017884 177 ICNQVN---KIIPALQSRC--TRFRFAPLEPVHVTERLKHVIEAE--GLDVTEGGLAALVRLC---NGDMRKALNILQST 246 (364)
Q Consensus 177 ~~~~~~---~l~~~l~sr~--~~i~~~~~~~~~~~~~l~~~~~~~--~~~i~~~~~~~l~~~~---~g~~r~a~~~l~~~ 246 (364)
+++... .+.+.+.+|+ ..+.|+|++.+++.+++..++... ...+++++++.+++.+ .||+|.+++.+..+
T Consensus 179 i~~~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a 258 (394)
T PRK00411 179 ISSDLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRA 258 (394)
T ss_pred EECCcchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 887543 4567777775 578999999999999999988653 3368999999999888 79999999999765
Q ss_pred HHhc-----ccCchHHHHHhcCCCChHHHHHHHHHHHhccHHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHhcCCChH
Q 017884 247 HMAS-----QQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMR--KGLALVDIVREVTMFVFKIKMPSD 319 (364)
Q Consensus 247 ~~~~-----~~i~~~~v~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~l~~l~~~--~~~~~~~i~~~l~~~~~~~~~~~~ 319 (364)
...+ ..|+.++|..+............+..+...... .+..+...... ......+++..+.......+.++.
T Consensus 259 ~~~a~~~~~~~I~~~~v~~a~~~~~~~~~~~~~~~L~~~~k~-~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~~~~~~~ 337 (394)
T PRK00411 259 GLIAEREGSRKVTEEDVRKAYEKSEIVHLSEVLRTLPLHEKL-LLRAIVRLLKKGGDEVTTGEVYEEYKELCEELGYEPR 337 (394)
T ss_pred HHHHHHcCCCCcCHHHHHHHHHHHHHHHHHHHHhcCCHHHHH-HHHHHHHHHhcCCCcccHHHHHHHHHHHHHHcCCCcC
Confidence 4322 479999998877654333333333332222111 22222222211 234566777666666666666554
Q ss_pred HHHHHHHHHHHHHH
Q 017884 320 VRVRLMNDLADIEY 333 (364)
Q Consensus 320 ~~~~i~~~l~~~~~ 333 (364)
....+.+.+.+++.
T Consensus 338 ~~~~~~~~l~~L~~ 351 (394)
T PRK00411 338 THTRFYEYINKLDM 351 (394)
T ss_pred cHHHHHHHHHHHHh
Confidence 44445555555554
No 93
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.84 E-value=1.4e-19 Score=160.34 Aligned_cols=189 Identities=19% Similarity=0.247 Sum_probs=135.6
Q ss_pred CcchhccHHHHHHHHHHHh----------c-----CCCCcEEEeCCCCccHHHHHHHHHHHHcCCC--CCCcEEEEeCCC
Q 017884 52 LADVAAHRDIVDTIDRLTS----------E-----NRLPHLLLYGPPGTGKTSTILAVARKLYGAQ--YHNMILELNASD 114 (364)
Q Consensus 52 ~~~~vg~~~~~~~l~~~~~----------~-----~~~~~lll~G~~G~GKt~la~~l~~~l~~~~--~~~~~~~~~~~~ 114 (364)
+++++|.+.+++.++.... . +..+|++|+||||||||++|+.+++.+...+ ....++++++++
T Consensus 5 l~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~~ 84 (261)
T TIGR02881 5 LSRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERAD 84 (261)
T ss_pred HHHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHHH
Confidence 5679999999987764432 1 2345689999999999999999999875433 223455555433
Q ss_pred CCCh--HHHHHHHHHHHhcCccccCCccceEEEEEeCCCCCC--------HHHHHHHHHHHHHhccCccEEEEeecc---
Q 017884 115 DRGI--DVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMT--------KDAQFALRRVIEKYTKNTRFALICNQV--- 181 (364)
Q Consensus 115 ~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~--------~~~~~~L~~~le~~~~~~~~Il~~~~~--- 181 (364)
..+. ......+.+.... . .++||+|||+|.|. .+.++.|++.|++...+.++|+++...
T Consensus 85 l~~~~~g~~~~~~~~~~~~-----a---~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~~~~~~ 156 (261)
T TIGR02881 85 LVGEYIGHTAQKTREVIKK-----A---LGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAGYSDEMD 156 (261)
T ss_pred hhhhhccchHHHHHHHHHh-----c---cCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecCCcchhH
Confidence 2111 0011112222211 1 24699999999986 346788999999877677777765322
Q ss_pred --ccCchhhhccc-eEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHH----------cCCCHHHHHHHHHHHHH
Q 017884 182 --NKIIPALQSRC-TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRL----------CNGDMRKALNILQSTHM 248 (364)
Q Consensus 182 --~~l~~~l~sr~-~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~----------~~g~~r~a~~~l~~~~~ 248 (364)
..+.+++++|+ ..+.|++++.+++.+++...+...+..++++++..|++. +.||.|.+.+.++.+..
T Consensus 157 ~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~~~~gn~R~~~n~~e~a~~ 236 (261)
T TIGR02881 157 YFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVKEREYKLTEEAKWKLREHLYKVDQLSSREFSNARYVRNIIEKAIR 236 (261)
T ss_pred HHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHH
Confidence 24678999998 779999999999999999999999999999999988654 25899999999987653
No 94
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.82 E-value=1.1e-18 Score=151.70 Aligned_cols=199 Identities=19% Similarity=0.253 Sum_probs=145.5
Q ss_pred CCCCcchhc--cHHHHHHHHHHHhcCCCCcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCCCChHHHHHHHH
Q 017884 49 PQSLADVAA--HRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQ 126 (364)
Q Consensus 49 p~~~~~~vg--~~~~~~~l~~~~~~~~~~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 126 (364)
|.+|++++. +...+..+++++......+++|+||+|+|||++++++++.....+. .++.+++..... ...
T Consensus 11 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~--~~~~i~~~~~~~------~~~ 82 (226)
T TIGR03420 11 DPTFDNFYAGGNAELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAEERGK--SAIYLPLAELAQ------ADP 82 (226)
T ss_pred chhhcCcCcCCcHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCC--cEEEEeHHHHHH------hHH
Confidence 456777773 6778899999887666667999999999999999999998754433 345555433211 111
Q ss_pred HHHhcCccccCCccceEEEEEeCCCCCCHHH--HHHHHHHHHHhc-cCccEEEEeeccc-c--Cc-hhhhccc---eEEE
Q 017884 127 DFASTQSFSFGVKASVKLVLLDEADAMTKDA--QFALRRVIEKYT-KNTRFALICNQVN-K--II-PALQSRC---TRFR 196 (364)
Q Consensus 127 ~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~--~~~L~~~le~~~-~~~~~Il~~~~~~-~--l~-~~l~sr~---~~i~ 196 (364)
..... +. ...+|+|||++.+.... ++.|..+++... ....+|++++... . .. +.+.+|+ ..+.
T Consensus 83 ~~~~~----~~---~~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~~~~~~i~ 155 (226)
T TIGR03420 83 EVLEG----LE---QADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAWGLVFQ 155 (226)
T ss_pred HHHhh----cc---cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHHhcCeeEe
Confidence 11111 11 35699999999998643 788888887643 2346777765332 2 22 6777775 5799
Q ss_pred ecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHH----hcccCchHHHHHhc
Q 017884 197 FAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHM----ASQQITEEAVYLCT 262 (364)
Q Consensus 197 ~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~a~~~l~~~~~----~~~~i~~~~v~~~~ 262 (364)
+++++.++...+++..+.+.++.+++++++.|++.++||+|.+.+.++.+.. ..+.||.+.+.+++
T Consensus 156 l~~l~~~e~~~~l~~~~~~~~~~~~~~~l~~L~~~~~gn~r~L~~~l~~~~~~~~~~~~~i~~~~~~~~~ 225 (226)
T TIGR03420 156 LPPLSDEEKIAALQSRAARRGLQLPDEVADYLLRHGSRDMGSLMALLDALDRASLAAKRKITIPFVKEVL 225 (226)
T ss_pred cCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHh
Confidence 9999999999999998888899999999999999999999999999876553 22478888777654
No 95
>COG1466 HolA DNA polymerase III, delta subunit [DNA replication, recombination, and repair]
Probab=99.82 E-value=1.7e-17 Score=151.82 Aligned_cols=280 Identities=15% Similarity=0.237 Sum_probs=218.6
Q ss_pred HHHHHhcC-CCCcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCCCChHHHHHHHHHHHhcCccccCCccceE
Q 017884 65 IDRLTSEN-RLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVK 143 (364)
Q Consensus 65 l~~~~~~~-~~~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 143 (364)
+...+..+ ..|-+++||+.-.-....+..+.+...+.+.......+...+ ..-..+...+.+.++ |+. ++
T Consensus 6 ~~~~l~~~~~~~v~ll~G~d~~l~~e~~~~i~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~s~~l-F~~---~~ 76 (334)
T COG1466 6 LAKHLKKKNLMPVYLLYGEDEGLLEEAADAILKRALADGFDENYSFFDDSE-----LDWADLLSELESPSL-FGE---KR 76 (334)
T ss_pred HHHHHhcCCCccEEEEecCChhHHHHHHHHHHHHHhccchhhHHhhccccc-----CCHHHHHHHhhcccc-ccC---Ce
Confidence 34445554 444489999998888888888888775433333333222221 112234444666666 776 68
Q ss_pred EEEEeCCCCCC-HHHHHHHHHHHHHhc-cCccEEEEeeccc---cCchhhhcc--ceEEEecCCChHHHHHHHHHHHHHc
Q 017884 144 LVLLDEADAMT-KDAQFALRRVIEKYT-KNTRFALICNQVN---KIIPALQSR--CTRFRFAPLEPVHVTERLKHVIEAE 216 (364)
Q Consensus 144 viiiDe~~~l~-~~~~~~L~~~le~~~-~~~~~Il~~~~~~---~l~~~l~sr--~~~i~~~~~~~~~~~~~l~~~~~~~ 216 (364)
+++|....... .+....+......+| .+..+++.++..+ +..+.+..- +.++.+.+++..++.+|+..++++.
T Consensus 77 ~v~l~~~~~~~~~~~~~~l~~~~~~~p~~~~~l~~~~~kl~~~~~~~k~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~ 156 (334)
T COG1466 77 LVVLKNAEKKPNKDKNLALLELAALLPSTDLLLLVESNKLDKAKKLTKWLKKLAKAVVVECKPLDEAELPQWIKKRAKEL 156 (334)
T ss_pred eEEEECCCCCcCchhHHHHHHHHcCCCCCCEEEEEecCCcchHHHHHHHHHHhccCceEecCCCCHHHHHHHHHHHHHHc
Confidence 99999988876 555566666666666 4444444443333 233333332 5689999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcc--cCchHHHHHhcCCCChHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 017884 217 GLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQ--QITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKM 294 (364)
Q Consensus 217 ~~~i~~~~~~~l~~~~~g~~r~a~~~l~~~~~~~~--~i~~~~v~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~l~~l~~ 294 (364)
|+.+++++++.|+...+||++.+.++++++..+.. .||.++|..++......+.|++++++.+++...++..++++.
T Consensus 157 ~l~i~~~a~~~L~~~~~~nl~~i~~Ei~KL~l~~~~~~I~~~~V~~~v~~~~~~~~f~l~dail~g~~~~a~~~l~~L~- 235 (334)
T COG1466 157 GLKIDQEAIQLLLEALGGNLLAIAQEIEKLALYAGDKEITLEDVEEVVSDVAEFNIFDLADALLKGDVKKALRLLRDLL- 235 (334)
T ss_pred CCCCCHHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCCcCCHHHHHHHHhccccCCHHHHHHHHHCCCHHHHHHHHHHHH-
Confidence 99999999999999999999999999999998775 699999999999999999999999999999999999999999
Q ss_pred hcCCCHHHHHHHHHHHHHhc-----------------------------------CCChHHHHHHHHHHHHHHHHHhcCC
Q 017884 295 RKGLALVDIVREVTMFVFKI-----------------------------------KMPSDVRVRLMNDLADIEYRLSFGC 339 (364)
Q Consensus 295 ~~~~~~~~i~~~l~~~~~~~-----------------------------------~~~~~~~~~i~~~l~~~~~~l~~~~ 339 (364)
..|++|..++..+.++++.+ +++.+.+..++..+.++|..+|++.
T Consensus 236 ~~ge~p~~il~~l~~~f~~~~~l~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~r~s~~~l~~~l~~l~~~d~~~K~~~ 315 (334)
T COG1466 236 LEGEEPLKLLAALTRQFRLLLQLKALAEKGKSLQQAAKSLGIPYRRKKLFKKAARRLSLKQLLKALRLLAQLDYQIKTGY 315 (334)
T ss_pred HcCCcHHHHHHHHHHHHHHHHHHHHHHHcCcCHHHHHHHhcCcHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHhcCC
Confidence 79999999999999999844 3788889999999999999999998
Q ss_pred -ChHHHHHHHHHHHHH
Q 017884 340 -NDKLQLGSIISTFTQ 354 (364)
Q Consensus 340 -~~~~~l~~l~~~l~~ 354 (364)
++...++.++..++.
T Consensus 316 ~d~~~~l~~~l~~~~~ 331 (334)
T COG1466 316 GDPVWALELFLLRLLE 331 (334)
T ss_pred ccchHHHHHHHHHHhh
Confidence 688888888887764
No 96
>PRK05642 DNA replication initiation factor; Validated
Probab=99.81 E-value=4.8e-18 Score=147.51 Aligned_cols=210 Identities=17% Similarity=0.233 Sum_probs=146.8
Q ss_pred CCCChhhccCCC-CCcchhc--cHHHHHHHHHHHhcC---CCCcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeC
Q 017884 39 KASPWVEKYRPQ-SLADVAA--HRDIVDTIDRLTSEN---RLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNA 112 (364)
Q Consensus 39 ~~~~~~~~~~p~-~~~~~vg--~~~~~~~l~~~~~~~---~~~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~ 112 (364)
.+.|+--.+.|. +|++++. +..++..+.++.... ..++++||||+|+|||++++++++++...+ ..+++++.
T Consensus 4 ~Ql~l~~~~~~~~tfdnF~~~~~~~a~~~~~~~~~~~~~~~~~~l~l~G~~G~GKTHLl~a~~~~~~~~~--~~v~y~~~ 81 (234)
T PRK05642 4 IQLPLGVRLRDDATFANYYPGANAAALGYVERLCEADAGWTESLIYLWGKDGVGRSHLLQAACLRFEQRG--EPAVYLPL 81 (234)
T ss_pred cccccCCCCCCcccccccCcCChHHHHHHHHHHhhccccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCC--CcEEEeeH
Confidence 455665566654 7888874 233333444443321 124589999999999999999999875443 34455544
Q ss_pred CCCCChHHHHHHHHHHHhcCccccCCccceEEEEEeCCCCCC--HHHHHHHHHHHHHhcc-CccEEEEeecc----ccCc
Q 017884 113 SDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMT--KDAQFALRRVIEKYTK-NTRFALICNQV----NKII 185 (364)
Q Consensus 113 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~--~~~~~~L~~~le~~~~-~~~~Il~~~~~----~~l~ 185 (364)
.+.. .....+... +. ...+++|||++.+. +..+..|+.+++.... +..+|++++.. ....
T Consensus 82 ~~~~------~~~~~~~~~----~~---~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~ 148 (234)
T PRK05642 82 AELL------DRGPELLDN----LE---QYELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKL 148 (234)
T ss_pred HHHH------hhhHHHHHh----hh---hCCEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccC
Confidence 3211 111111111 11 24699999999885 3456779999987654 45566666532 2346
Q ss_pred hhhhccc---eEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHh----cccCchHHH
Q 017884 186 PALQSRC---TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMA----SQQITEEAV 258 (364)
Q Consensus 186 ~~l~sr~---~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~a~~~l~~~~~~----~~~i~~~~v 258 (364)
+.++||+ .++.+.+|+.++...+++.++...++.++++++++|++.++||+|.+.+.++.+... ..+||...+
T Consensus 149 ~~L~SRl~~gl~~~l~~~~~e~~~~il~~ka~~~~~~l~~ev~~~L~~~~~~d~r~l~~~l~~l~~~~l~~~~~it~~~~ 228 (234)
T PRK05642 149 PDLKSRLTLALVFQMRGLSDEDKLRALQLRASRRGLHLTDEVGHFILTRGTRSMSALFDLLERLDQASLQAQRKLTIPFL 228 (234)
T ss_pred ccHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCCcCCHHHH
Confidence 8999997 889999999999999999888888999999999999999999999999988776532 257888888
Q ss_pred HHhcC
Q 017884 259 YLCTG 263 (364)
Q Consensus 259 ~~~~~ 263 (364)
+++++
T Consensus 229 ~~~L~ 233 (234)
T PRK05642 229 KETLG 233 (234)
T ss_pred HHHhc
Confidence 77653
No 97
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=1.6e-17 Score=152.09 Aligned_cols=280 Identities=18% Similarity=0.279 Sum_probs=185.6
Q ss_pred hhccCCCCCcchhccHHHHHHHHHH----HhcCCCCcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCCCChH
Q 017884 44 VEKYRPQSLADVAAHRDIVDTIDRL----TSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGID 119 (364)
Q Consensus 44 ~~~~~p~~~~~~vg~~~~~~~l~~~----~~~~~~~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 119 (364)
...|-|.. +.+++..+.++... +.++.+.++++||+||+|||++++.+++++........++++||.......
T Consensus 11 ~~~~iP~~---l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~ 87 (366)
T COG1474 11 LEDYIPEE---LPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPY 87 (366)
T ss_pred CCCCCccc---ccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHH
Confidence 34455544 78888888866555 445666669999999999999999999999776555558899998776665
Q ss_pred HHHHHHHHHHhcCccc--------------cCCccceEEEEEeCCCCCCHHHHHHHHHHHHHhccC---ccEEEEeecc-
Q 017884 120 VVRQQIQDFASTQSFS--------------FGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKN---TRFALICNQV- 181 (364)
Q Consensus 120 ~~~~~i~~~~~~~~~~--------------~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~---~~~Il~~~~~- 181 (364)
.+...+-......|.. +......-||++||+|.|....++.|..++..+... +.+|+++|..
T Consensus 88 ~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~ 167 (366)
T COG1474 88 QVLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDK 167 (366)
T ss_pred HHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHH
Confidence 5554444433222210 111235779999999999877556666666554333 3466666654
Q ss_pred --ccCchhhhccc--eEEEecCCChHHHHHHHHHHHHH--cCCCCCHHHHHHHHHH---cCCCHHHHHHHHHHHHHhc--
Q 017884 182 --NKIIPALQSRC--TRFRFAPLEPVHVTERLKHVIEA--EGLDVTEGGLAALVRL---CNGDMRKALNILQSTHMAS-- 250 (364)
Q Consensus 182 --~~l~~~l~sr~--~~i~~~~~~~~~~~~~l~~~~~~--~~~~i~~~~~~~l~~~---~~g~~r~a~~~l~~~~~~~-- 250 (364)
..+.+.++|+. ..+.|+|++.+|+..+|..+++. ....+++++++.++.. .+||.|.|+..|..+...+
T Consensus 168 ~~~~ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidilr~A~eiAe~ 247 (366)
T COG1474 168 FLDYLDPRVKSSLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDILRRAGEIAER 247 (366)
T ss_pred HHHHhhhhhhhccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHh
Confidence 36778888875 45889999999999999999885 2446788888877754 4789999999998776543
Q ss_pred ---ccCchHHHHHhcCCCChHHHHHHHHHHHhccHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHhcCCChHHHHHHHH
Q 017884 251 ---QQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMR-KGLALVDIVREVTMFVFKIKMPSDVRVRLMN 326 (364)
Q Consensus 251 ---~~i~~~~v~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~l~~l~~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~i~~ 326 (364)
..++.++|..+..........+.++.+. ..+.+. +..+... .......++..+......... ...++.+
T Consensus 248 ~~~~~v~~~~v~~a~~~~~~~~~~~~~~~L~---~~~ki~-L~~i~~~~~~~~~~~~y~~y~~~~~~~~~---~~~~~~~ 320 (366)
T COG1474 248 EGSRKVSEDHVREAQEEIERDVLEEVLKTLP---LHQKIV-LLAIVELTVEISTGELYDVYESLCERLRT---SQRRFSD 320 (366)
T ss_pred hCCCCcCHHHHHHHHHHhhHHHHHHHHHcCC---HhHHHH-HHHHHHhcCCCChHHHHHHHHHHHhhhCc---hHHHHHH
Confidence 4899999998855544444444444332 222221 2222212 455666666666555554444 4445555
Q ss_pred HHHHHHH
Q 017884 327 DLADIEY 333 (364)
Q Consensus 327 ~l~~~~~ 333 (364)
.+.+++.
T Consensus 321 ii~~L~~ 327 (366)
T COG1474 321 IISELEG 327 (366)
T ss_pred HHHHHHh
Confidence 5555554
No 98
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.81 E-value=9.4e-19 Score=146.61 Aligned_cols=204 Identities=20% Similarity=0.230 Sum_probs=143.5
Q ss_pred hccCCCCCcchhccHHHHHHHHHH---HhcC------CCCcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCC
Q 017884 45 EKYRPQSLADVAAHRDIVDTIDRL---TSEN------RLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDD 115 (364)
Q Consensus 45 ~~~~p~~~~~~vg~~~~~~~l~~~---~~~~------~~~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~ 115 (364)
+-.+-.+|+|++||++++...+-. +.+. .+.++|||||||+|||.+|++++++. ...++.+.++..
T Consensus 113 e~~~~it~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~-----kvp~l~vkat~l 187 (368)
T COG1223 113 EIISDITLDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEA-----KVPLLLVKATEL 187 (368)
T ss_pred hhhccccHhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhccc-----CCceEEechHHH
Confidence 445556899999999998865444 4332 34459999999999999999999986 556666666553
Q ss_pred CC------hHHHHHHHHHHHhcCccccCCccceEEEEEeCCCCCC------------HHHHHHHHHHHHHhcc--CccEE
Q 017884 116 RG------IDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMT------------KDAQFALRRVIEKYTK--NTRFA 175 (364)
Q Consensus 116 ~~------~~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~------------~~~~~~L~~~le~~~~--~~~~I 175 (364)
.| ...+++..+...+. .++|++|||+|.+. .+..|+|+.-|+.... .++.|
T Consensus 188 iGehVGdgar~Ihely~rA~~~---------aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtI 258 (368)
T COG1223 188 IGEHVGDGARRIHELYERARKA---------APCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTI 258 (368)
T ss_pred HHHHhhhHHHHHHHHHHHHHhc---------CCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEE
Confidence 22 22233322222221 47899999999985 2356788888876543 45667
Q ss_pred EEeeccccCchhhhccc-eEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHH------HHHH
Q 017884 176 LICNQVNKIIPALQSRC-TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNG-DMRKALNIL------QSTH 247 (364)
Q Consensus 176 l~~~~~~~l~~~l~sr~-~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g-~~r~a~~~l------~~~~ 247 (364)
.+||++..++++++||+ ..++|.-|+.++...++...+++..+.++.. ++++++.+.| +-|.+..-. +.+.
T Consensus 259 aaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~-~~~~~~~t~g~SgRdikekvlK~aLh~Ai~ 337 (368)
T COG1223 259 AATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPVDAD-LRYLAAKTKGMSGRDIKEKVLKTALHRAIA 337 (368)
T ss_pred eecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCccccC-HHHHHHHhCCCCchhHHHHHHHHHHHHHHH
Confidence 77899999999999999 7799999999999999999999988887776 7888888865 333333222 2222
Q ss_pred HhcccCchHHHHHhcC
Q 017884 248 MASQQITEEAVYLCTG 263 (364)
Q Consensus 248 ~~~~~i~~~~v~~~~~ 263 (364)
.....|+.+++..++.
T Consensus 338 ed~e~v~~edie~al~ 353 (368)
T COG1223 338 EDREKVEREDIEKALK 353 (368)
T ss_pred hchhhhhHHHHHHHHH
Confidence 2234566666655443
No 99
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.81 E-value=2.8e-18 Score=167.91 Aligned_cols=226 Identities=23% Similarity=0.330 Sum_probs=162.4
Q ss_pred CCChhhccCCCCCcchhccHHHHHHHHHHHhcCCCCcEEEeCCCCccHHHHHHHHHHHHcCCC-----CCCcEEEEeCCC
Q 017884 40 ASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ-----YHNMILELNASD 114 (364)
Q Consensus 40 ~~~~~~~~~p~~~~~~vg~~~~~~~l~~~~~~~~~~~lll~G~~G~GKt~la~~l~~~l~~~~-----~~~~~~~~~~~~ 114 (364)
..|..+.+||.+|++++|++..+..+...+.....++++|+||+|+|||++|+.+++...... ....++.+++..
T Consensus 141 ~~~~~~~~rp~~~~~iiGqs~~~~~l~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~ 220 (615)
T TIGR02903 141 HKSAQSLLRPRAFSEIVGQERAIKALLAKVASPFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTT 220 (615)
T ss_pred hhHHhhhcCcCcHHhceeCcHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechh
Confidence 356788899999999999999999988888777777899999999999999999987753211 134567777654
Q ss_pred CC-ChHHHHHHH------------H-HHHhc--Cc--cccCCccceEEEEEeCCCCCCHHHHHHHHHHHHHhc-------
Q 017884 115 DR-GIDVVRQQI------------Q-DFAST--QS--FSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYT------- 169 (364)
Q Consensus 115 ~~-~~~~~~~~i------------~-~~~~~--~~--~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~------- 169 (364)
.. ....+...+ . ..... .. ...-...++++++|||++.|....++.|++++++..
T Consensus 221 l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~~~~~~ 300 (615)
T TIGR02903 221 LRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVEFSSSY 300 (615)
T ss_pred ccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCeEEeecce
Confidence 21 111110000 0 00000 00 000111246799999999999999999999998631
Q ss_pred -------------------cCccEEEE--e-eccccCchhhhccceEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHH
Q 017884 170 -------------------KNTRFALI--C-NQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAA 227 (364)
Q Consensus 170 -------------------~~~~~Il~--~-~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~ 227 (364)
..+.++++ + +.+..+.+++++||..+.|+|++.+++..++...+.+.++.+++++++.
T Consensus 301 ~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~v~ls~eal~~ 380 (615)
T TIGR02903 301 YDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKINVHLAAGVEEL 380 (615)
T ss_pred eccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 11223443 3 4566788999999999999999999999999999998888899999999
Q ss_pred HHHHcCCCHHHHHHHHHHHHHhc-------------ccCchHHHHHhcCCCC
Q 017884 228 LVRLCNGDMRKALNILQSTHMAS-------------QQITEEAVYLCTGNPL 266 (364)
Q Consensus 228 l~~~~~g~~r~a~~~l~~~~~~~-------------~~i~~~~v~~~~~~~~ 266 (364)
|++++. +.|++++.|+.+..+. ..|+.++|.++++...
T Consensus 381 L~~ys~-~gRraln~L~~~~~~~~~~~~~~~~~~~~~~I~~edv~~~l~~~r 431 (615)
T TIGR02903 381 IARYTI-EGRKAVNILADVYGYALYRAAEAGKENDKVTITQDDVYEVIQISR 431 (615)
T ss_pred HHHCCC-cHHHHHHHHHHHHHHHHHHHHHhccCCCCeeECHHHHHHHhCCCc
Confidence 998764 6799999886553221 1578888888877653
No 100
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=99.80 E-value=2.9e-18 Score=163.22 Aligned_cols=207 Identities=27% Similarity=0.468 Sum_probs=137.3
Q ss_pred CCCCCChhhccCCCCCcchhccHHHHHHHHHHHhcC---CC--CcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEe
Q 017884 37 DIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSEN---RL--PHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELN 111 (364)
Q Consensus 37 ~~~~~~~~~~~~p~~~~~~vg~~~~~~~l~~~~~~~---~~--~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~ 111 (364)
.....||+++|+|.+.+|++.|++.++.++.|++.. .. ..++|+||+|+|||++++.+++++. ..+.+..
T Consensus 3 ~~~~~~W~~ky~P~~~~eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~elg-----~~v~Ew~ 77 (519)
T PF03215_consen 3 DDESEPWVEKYAPKTLDELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKELG-----FEVQEWI 77 (519)
T ss_pred CcccCccchhcCCCCHHHhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHhC-----CeeEEec
Confidence 356789999999999999999999999999999853 21 1279999999999999999999983 3333331
Q ss_pred CCCC-----------C----ChHHHHHH---HHHH-HhcCcc-cc---C--CccceEEEEEeCCCCCCHHHHHHHHHHHH
Q 017884 112 ASDD-----------R----GIDVVRQQ---IQDF-ASTQSF-SF---G--VKASVKLVLLDEADAMTKDAQFALRRVIE 166 (364)
Q Consensus 112 ~~~~-----------~----~~~~~~~~---i~~~-~~~~~~-~~---~--~~~~~~viiiDe~~~l~~~~~~~L~~~le 166 (364)
.... . ..+..... +.++ ...... .. + ....++||+|||+..+.......|...|.
T Consensus 78 np~~~~~~~~~~~d~~s~~~~~~~f~sq~~~F~~f~l~~s~y~~l~~~g~~~~~~~kvILVEDlPN~~~~~~~~f~~~L~ 157 (519)
T PF03215_consen 78 NPVSFRESDNQEDDFESDFNKFDEFLSQSDKFSEFLLRASKYSSLSMSGSNSSSNKKVILVEDLPNVFHRDTSRFREALR 157 (519)
T ss_pred CCCCccccccccccccccccccccccchhhhhccccccccccccccccCCCcCCCceEEEeeccccccchhHHHHHHHHH
Confidence 1110 0 00001111 2222 111010 00 1 11258899999998876444456666555
Q ss_pred Hhc--cCc-cEEE-Eee--c------cc--------cCchhhhcc--ceEEEecCCChHHHHHHHHHHHHHc-----CC-
Q 017884 167 KYT--KNT-RFAL-ICN--Q------VN--------KIIPALQSR--CTRFRFAPLEPVHVTERLKHVIEAE-----GL- 218 (364)
Q Consensus 167 ~~~--~~~-~~Il-~~~--~------~~--------~l~~~l~sr--~~~i~~~~~~~~~~~~~l~~~~~~~-----~~- 218 (364)
.+- ..+ .+|+ +++ . .. -+.+.+... +..|.|.|..+.-+.+.|.+++.++ +.
T Consensus 158 ~~l~~~~~~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i~~I~FNpIa~T~mkKaL~rI~~~E~~~~~~~~ 237 (519)
T PF03215_consen 158 QYLRSSRCLPLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPGITRIKFNPIAPTFMKKALKRILKKEARSSSGKN 237 (519)
T ss_pred HHHHcCCCCCEEEEEecccccCCCCcccccchhhhhccCHHHHhCCCceEEEecCCCHHHHHHHHHHHHHHHhhhhcCCc
Confidence 432 223 4444 331 1 00 233455553 5889999999999999999999987 22
Q ss_pred CCC--HHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 017884 219 DVT--EGGLAALVRLCNGDMRKALNILQSTHM 248 (364)
Q Consensus 219 ~i~--~~~~~~l~~~~~g~~r~a~~~l~~~~~ 248 (364)
..+ .+.++.|++.++||+|.|++.||..+.
T Consensus 238 ~~p~~~~~l~~I~~~s~GDIRsAIn~LQf~~~ 269 (519)
T PF03215_consen 238 KVPDKQSVLDSIAESSNGDIRSAINNLQFWCL 269 (519)
T ss_pred cCCChHHHHHHHHHhcCchHHHHHHHHHHHhc
Confidence 222 345899999999999999999999887
No 101
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.80 E-value=5.4e-18 Score=160.11 Aligned_cols=208 Identities=14% Similarity=0.213 Sum_probs=149.2
Q ss_pred CCCCCcchhcc---HHHHHHHHHHHhcCC--CCcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCCCChHHHH
Q 017884 48 RPQSLADVAAH---RDIVDTIDRLTSENR--LPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVR 122 (364)
Q Consensus 48 ~p~~~~~~vg~---~~~~~~l~~~~~~~~--~~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 122 (364)
.+.+|+.++.. ..+......+..... .++++|||++|+|||++++++++.+........++++++... ...+.
T Consensus 110 ~~~tFdnFv~g~~n~~A~~aa~~~a~~~~~~~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f--~~~~~ 187 (450)
T PRK14087 110 NENTFENFVIGSSNEQAFIAVQTVSKNPGISYNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEF--ARKAV 187 (450)
T ss_pred cccchhcccCCCcHHHHHHHHHHHHhCcCcccCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHH--HHHHH
Confidence 34688888742 224445555555422 244999999999999999999998765444556666665331 11111
Q ss_pred H-------HHHHHHhcCccccCCccceEEEEEeCCCCCC--HHHHHHHHHHHHHhccC-ccEEEEeeccc----cCchhh
Q 017884 123 Q-------QIQDFASTQSFSFGVKASVKLVLLDEADAMT--KDAQFALRRVIEKYTKN-TRFALICNQVN----KIIPAL 188 (364)
Q Consensus 123 ~-------~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~--~~~~~~L~~~le~~~~~-~~~Il~~~~~~----~l~~~l 188 (364)
. .+..+... +. ...+++|||++.+. ...++.|+.++...... ..+|++++.+. .+.+.|
T Consensus 188 ~~l~~~~~~~~~~~~~----~~---~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL 260 (450)
T PRK14087 188 DILQKTHKEIEQFKNE----IC---QNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRL 260 (450)
T ss_pred HHHHHhhhHHHHHHHH----hc---cCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHH
Confidence 1 11222111 11 36699999999997 56788899998876543 35777776443 456788
Q ss_pred hccc---eEEEecCCChHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhc------ccCchHH
Q 017884 189 QSRC---TRFRFAPLEPVHVTERLKHVIEAEGL--DVTEGGLAALVRLCNGDMRKALNILQSTHMAS------QQITEEA 257 (364)
Q Consensus 189 ~sr~---~~i~~~~~~~~~~~~~l~~~~~~~~~--~i~~~~~~~l~~~~~g~~r~a~~~l~~~~~~~------~~i~~~~ 257 (364)
.+|+ .++.+.+|+.+++.++|++.++..|. .++++++++|+..++||+|.+.+.+..+...+ ..||.+.
T Consensus 261 ~SR~~~Gl~~~L~~pd~e~r~~iL~~~~~~~gl~~~l~~evl~~Ia~~~~gd~R~L~gaL~~l~~~a~~~~~~~~it~~~ 340 (450)
T PRK14087 261 ITRFNMGLSIAIQKLDNKTATAIIKKEIKNQNIKQEVTEEAINFISNYYSDDVRKIKGSVSRLNFWSQQNPEEKIITIEI 340 (450)
T ss_pred HHHHhCCceeccCCcCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHccCCCHHHHHHHHHHHHHHHhcccCCCCCCHHH
Confidence 8885 68999999999999999999998775 69999999999999999999999997765322 4799999
Q ss_pred HHHhcCC
Q 017884 258 VYLCTGN 264 (364)
Q Consensus 258 v~~~~~~ 264 (364)
+.+++..
T Consensus 341 v~~~l~~ 347 (450)
T PRK14087 341 VSDLFRD 347 (450)
T ss_pred HHHHHhh
Confidence 8887753
No 102
>CHL00181 cbbX CbbX; Provisional
Probab=99.79 E-value=6.2e-18 Score=150.65 Aligned_cols=188 Identities=22% Similarity=0.285 Sum_probs=133.6
Q ss_pred cchhccHHHHHHHHHHHh----------c-----CCCCcEEEeCCCCccHHHHHHHHHHHHcCCCC--CCcEEEEeCCCC
Q 017884 53 ADVAAHRDIVDTIDRLTS----------E-----NRLPHLLLYGPPGTGKTSTILAVARKLYGAQY--HNMILELNASDD 115 (364)
Q Consensus 53 ~~~vg~~~~~~~l~~~~~----------~-----~~~~~lll~G~~G~GKt~la~~l~~~l~~~~~--~~~~~~~~~~~~ 115 (364)
++++|.+.+++++..++. . ....|++|+||||||||++|+++++.+...+. ...+++++..+.
T Consensus 23 ~~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~l 102 (287)
T CHL00181 23 EELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDDL 102 (287)
T ss_pred HhcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHHH
Confidence 479999999987766542 0 12335899999999999999999998754332 123555553321
Q ss_pred CChH--HHHHHHHHHHhcCccccCCccceEEEEEeCCCCC---------CHHHHHHHHHHHHHhccCccEEEEeecc--c
Q 017884 116 RGID--VVRQQIQDFASTQSFSFGVKASVKLVLLDEADAM---------TKDAQFALRRVIEKYTKNTRFALICNQV--N 182 (364)
Q Consensus 116 ~~~~--~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l---------~~~~~~~L~~~le~~~~~~~~Il~~~~~--~ 182 (364)
.+.- ............ ..++|++|||++.+ ..+.++.|+..|+....++++|++++.. .
T Consensus 103 ~~~~~g~~~~~~~~~l~~--------a~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~ 174 (287)
T CHL00181 103 VGQYIGHTAPKTKEVLKK--------AMGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMD 174 (287)
T ss_pred HHHHhccchHHHHHHHHH--------ccCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHH
Confidence 0000 000011111111 13579999999987 3567889999999887777777776421 1
Q ss_pred ---cCchhhhccc-eEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--------cCCCHHHHHHHHHHHHH
Q 017884 183 ---KIIPALQSRC-TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRL--------CNGDMRKALNILQSTHM 248 (364)
Q Consensus 183 ---~l~~~l~sr~-~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~--------~~g~~r~a~~~l~~~~~ 248 (364)
...|.+++|+ ..+.|++++.+++.+++...+++.+..+++++...+..+ ..||.|.+.+.++.+..
T Consensus 175 ~~~~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~~~~~~L~~~i~~~~~~~~~GNaR~vrn~ve~~~~ 252 (287)
T CHL00181 175 KFYESNPGLSSRIANHVDFPDYTPEELLQIAKIMLEEQQYQLTPEAEKALLDYIKKRMEQPLFANARSVRNALDRARM 252 (287)
T ss_pred HHHhcCHHHHHhCCceEEcCCcCHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHH
Confidence 3458999998 689999999999999999999999999999988777765 23899999999987664
No 103
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=9.6e-18 Score=147.00 Aligned_cols=197 Identities=22% Similarity=0.331 Sum_probs=139.5
Q ss_pred CCCcchhccHHHHHHHHHHHhc-----------C-CCCc-EEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCC-
Q 017884 50 QSLADVAAHRDIVDTIDRLTSE-----------N-RLPH-LLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDD- 115 (364)
Q Consensus 50 ~~~~~~vg~~~~~~~l~~~~~~-----------~-~~~~-lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~- 115 (364)
.+++++-|-++.++.++..+.- | .+|. +|||||||||||.+|+++|++. ...|+.+.++..
T Consensus 148 vtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T-----~AtFIrvvgSElV 222 (406)
T COG1222 148 VTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQT-----DATFIRVVGSELV 222 (406)
T ss_pred CChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhcc-----CceEEEeccHHHH
Confidence 4889999999999999998862 1 2333 9999999999999999999986 677888876542
Q ss_pred -----CChHHHHHHHHHHHhcCccccCCccceEEEEEeCCCCCC-----------HHHHHHHHHHHHH-----hccCccE
Q 017884 116 -----RGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMT-----------KDAQFALRRVIEK-----YTKNTRF 174 (364)
Q Consensus 116 -----~~~~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~-----------~~~~~~L~~~le~-----~~~~~~~ 174 (364)
.+...+++.+.- +.+..+.||||||+|.+. .+.|-.++++|.+ +..++.+
T Consensus 223 qKYiGEGaRlVRelF~l---------ArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKV 293 (406)
T COG1222 223 QKYIGEGARLVRELFEL---------AREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKV 293 (406)
T ss_pred HHHhccchHHHHHHHHH---------HhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEE
Confidence 233344443322 222357899999999994 2456667766665 3468899
Q ss_pred EEEeeccccCchhhhc--cc-eEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC----HHHHHHHHHHHH
Q 017884 175 ALICNQVNKIIPALQS--RC-TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGD----MRKALNILQSTH 247 (364)
Q Consensus 175 Il~~~~~~~l~~~l~s--r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~----~r~a~~~l~~~~ 247 (364)
|++||.++-++|+|.+ |+ +.++|+.|+.+...++++-+..+.++. ++-.++.|+..+.|- ++....+.-..+
T Consensus 294 I~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~-~dvd~e~la~~~~g~sGAdlkaictEAGm~A 372 (406)
T COG1222 294 IMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLA-DDVDLELLARLTEGFSGADLKAICTEAGMFA 372 (406)
T ss_pred EEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCc-cCcCHHHHHHhcCCCchHHHHHHHHHHhHHH
Confidence 9999999999999988 44 679999999999999999888766542 223467788877653 333333332222
Q ss_pred Hh--cccCchHHHHHh
Q 017884 248 MA--SQQITEEAVYLC 261 (364)
Q Consensus 248 ~~--~~~i~~~~v~~~ 261 (364)
.- ...+|.+|..++
T Consensus 373 iR~~R~~Vt~~DF~~A 388 (406)
T COG1222 373 IRERRDEVTMEDFLKA 388 (406)
T ss_pred HHhccCeecHHHHHHH
Confidence 21 136776665544
No 104
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.79 E-value=8.8e-17 Score=153.74 Aligned_cols=214 Identities=13% Similarity=0.161 Sum_probs=148.8
Q ss_pred hhhccCCC-CCcchhc-cHH--HHHHHHHHHhcC-CC-CcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCCC
Q 017884 43 WVEKYRPQ-SLADVAA-HRD--IVDTIDRLTSEN-RL-PHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDR 116 (364)
Q Consensus 43 ~~~~~~p~-~~~~~vg-~~~--~~~~l~~~~~~~-~~-~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~ 116 (364)
+...+.|. +|++|+. ..+ +...+..++... .. ..++|||++|+|||+|++++++.+........++++++....
T Consensus 277 ~~a~L~~~~TFDnFvvG~sN~~A~aaa~avae~~~~~~NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~ 356 (617)
T PRK14086 277 PTARLNPKYTFDTFVIGASNRFAHAAAVAVAEAPAKAYNPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFT 356 (617)
T ss_pred ccCCCCCCCCHhhhcCCCccHHHHHHHHHHHhCccccCCcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHH
Confidence 33444443 7888874 222 333555555432 22 238999999999999999999997543334556666553311
Q ss_pred --ChHHHHH-HHHHHHhcCccccCCccceEEEEEeCCCCCCH--HHHHHHHHHHHHhcc-CccEEEEeeccc----cCch
Q 017884 117 --GIDVVRQ-QIQDFASTQSFSFGVKASVKLVLLDEADAMTK--DAQFALRRVIEKYTK-NTRFALICNQVN----KIIP 186 (364)
Q Consensus 117 --~~~~~~~-~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~~--~~~~~L~~~le~~~~-~~~~Il~~~~~~----~l~~ 186 (364)
....+.+ .+..+... +. ...+|+|||++.+.. ..++.|+.+++.... +..+|++++... .+.+
T Consensus 357 ~el~~al~~~~~~~f~~~----y~---~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~ 429 (617)
T PRK14086 357 NEFINSIRDGKGDSFRRR----YR---EMDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLED 429 (617)
T ss_pred HHHHHHHHhccHHHHHHH----hh---cCCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccH
Confidence 0011111 11112111 11 367999999999953 447888899887655 355777776542 4678
Q ss_pred hhhccc---eEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhc----ccCchHHHH
Q 017884 187 ALQSRC---TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMAS----QQITEEAVY 259 (364)
Q Consensus 187 ~l~sr~---~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~a~~~l~~~~~~~----~~i~~~~v~ 259 (364)
.|+||+ .++.+.+|+.+...++|+..+...++.++++++++|+....+|+|.+...|.++..++ ..||.+.++
T Consensus 430 rL~SRf~~GLvv~I~~PD~EtR~aIL~kka~~r~l~l~~eVi~yLa~r~~rnvR~LegaL~rL~a~a~~~~~~itl~la~ 509 (617)
T PRK14086 430 RLRNRFEWGLITDVQPPELETRIAILRKKAVQEQLNAPPEVLEFIASRISRNIRELEGALIRVTAFASLNRQPVDLGLTE 509 (617)
T ss_pred HHHhhhhcCceEEcCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhCCCCCHHHHH
Confidence 899995 6799999999999999999999999999999999999999999999998887765433 478887776
Q ss_pred HhcC
Q 017884 260 LCTG 263 (364)
Q Consensus 260 ~~~~ 263 (364)
.++.
T Consensus 510 ~vL~ 513 (617)
T PRK14086 510 IVLR 513 (617)
T ss_pred HHHH
Confidence 6654
No 105
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=99.78 E-value=2.1e-17 Score=150.75 Aligned_cols=265 Identities=15% Similarity=0.243 Sum_probs=175.5
Q ss_pred CCcchhc---cHHHHHHHHHHHhcC--CCCcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCCC--ChHHHHH
Q 017884 51 SLADVAA---HRDIVDTIDRLTSEN--RLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDR--GIDVVRQ 123 (364)
Q Consensus 51 ~~~~~vg---~~~~~~~l~~~~~~~--~~~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~ 123 (364)
+|+.++. +.-+......+.... ..+.++||||+|.|||++++++++.....+....+++++..... .+..+++
T Consensus 85 tFdnFv~g~~N~~A~aa~~~va~~~g~~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~~v~a~~~ 164 (408)
T COG0593 85 TFDNFVVGPSNRLAYAAAKAVAENPGGAYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTNDFVKALRD 164 (408)
T ss_pred chhheeeCCchHHHHHHHHHHHhccCCcCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHHHHHHHHHh
Confidence 5666665 333444555555543 24459999999999999999999999887777777777654321 1111111
Q ss_pred -HHHHHHhcCccccCCccceEEEEEeCCCCCCH--HHHHHHHHHHHHhccCc-cEEEEeeccc----cCchhhhcc---c
Q 017884 124 -QIQDFASTQSFSFGVKASVKLVLLDEADAMTK--DAQFALRRVIEKYTKNT-RFALICNQVN----KIIPALQSR---C 192 (364)
Q Consensus 124 -~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~~--~~~~~L~~~le~~~~~~-~~Il~~~~~~----~l~~~l~sr---~ 192 (364)
.+.+|... + ...+++|||++.+.. ..++.|+.++.....+. .+|++++.+. .+.+.|+|| +
T Consensus 165 ~~~~~Fk~~----y----~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~G 236 (408)
T COG0593 165 NEMEKFKEK----Y----SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWG 236 (408)
T ss_pred hhHHHHHHh----h----ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhce
Confidence 22223222 2 267999999999964 45899999998876555 5677775443 355789998 4
Q ss_pred eEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhc----ccCchHHHHHhcCCCCh-
Q 017884 193 TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMAS----QQITEEAVYLCTGNPLP- 267 (364)
Q Consensus 193 ~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~a~~~l~~~~~~~----~~i~~~~v~~~~~~~~~- 267 (364)
.++.+.||+.+....+|...+...++.++++++.+++.....|+|.+...+.++..++ ..||.+.+.+++.....
T Consensus 237 l~~~I~~Pd~e~r~aiL~kka~~~~~~i~~ev~~~la~~~~~nvReLegaL~~l~~~a~~~~~~iTi~~v~e~L~~~~~~ 316 (408)
T COG0593 237 LVVEIEPPDDETRLAILRKKAEDRGIEIPDEVLEFLAKRLDRNVRELEGALNRLDAFALFTKRAITIDLVKEILKDLLRA 316 (408)
T ss_pred eEEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcCccCcHHHHHHHHHHhhcc
Confidence 7899999999999999999999999999999999999999999999988887766543 47888888777643221
Q ss_pred ---HHHHHHHHHHHhccHHHHHH-HHHHHHHhcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 017884 268 ---KDIEQISYWLLNESFADSFK-RISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLA 329 (364)
Q Consensus 268 ---~~~~~l~~~l~~~~~~~~~~-~l~~l~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~i~~~l~ 329 (364)
..+..+.+.+.+ -+. .+.+++...........+++++++.+ .+.+.++++|-+..+
T Consensus 317 ~~~itie~I~~~Va~-----~y~v~~~dl~s~~R~~~i~~~RqiamyL~r-~lt~~Slp~IG~~Fg 376 (408)
T COG0593 317 GEKITIEDIQKIVAE-----YYNVKVSDLLSKSRTRNIVRPRQIAMYLAR-ELTNLSLPEIGKAFG 376 (408)
T ss_pred cccCCHHHHHHHHHH-----HhCCCHHHhhccccccccchHHHHHHHHHH-HHccCcHHHHHHHhC
Confidence 222222222221 111 23444433333444455566666654 233444555544433
No 106
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.78 E-value=8.7e-17 Score=151.85 Aligned_cols=205 Identities=12% Similarity=0.205 Sum_probs=144.3
Q ss_pred CCcchh-ccH--HHHHHHHHHHhcC-CCCcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCCCChHHHHHHH-
Q 017884 51 SLADVA-AHR--DIVDTIDRLTSEN-RLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQI- 125 (364)
Q Consensus 51 ~~~~~v-g~~--~~~~~l~~~~~~~-~~~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i- 125 (364)
+|++++ |.. .+......+..+. ..++++||||+|+|||++++++++.+........++++++.+. ...+...+
T Consensus 103 tFdnFv~g~~n~~a~~~~~~~~~~~~~~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f--~~~~~~~~~ 180 (440)
T PRK14088 103 TFENFVVGPGNSFAYHAALEVAKNPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKF--LNDLVDSMK 180 (440)
T ss_pred cccccccCCchHHHHHHHHHHHhCcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHH--HHHHHHHHh
Confidence 788887 432 2334555555433 2345999999999999999999999866555556666665321 11111111
Q ss_pred ----HHHHhcCccccCCccceEEEEEeCCCCCCH--HHHHHHHHHHHHhccC-ccEEEEeecc----ccCchhhhccce-
Q 017884 126 ----QDFASTQSFSFGVKASVKLVLLDEADAMTK--DAQFALRRVIEKYTKN-TRFALICNQV----NKIIPALQSRCT- 193 (364)
Q Consensus 126 ----~~~~~~~~~~~~~~~~~~viiiDe~~~l~~--~~~~~L~~~le~~~~~-~~~Il~~~~~----~~l~~~l~sr~~- 193 (364)
..+... +.. ...+++|||++.+.. ..+..|+.++...... ..+|++++.. ..+.+.+.||+.
T Consensus 181 ~~~~~~f~~~----~~~--~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~ 254 (440)
T PRK14088 181 EGKLNEFREK----YRK--KVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQM 254 (440)
T ss_pred cccHHHHHHH----HHh--cCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhc
Confidence 111111 100 367999999998853 3467788888765443 4566666432 245678889864
Q ss_pred --EEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhc----ccCchHHHHHhcC
Q 017884 194 --RFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMAS----QQITEEAVYLCTG 263 (364)
Q Consensus 194 --~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~a~~~l~~~~~~~----~~i~~~~v~~~~~ 263 (364)
++.+.+|+.+....++++.+...++.++++++++|++.+.||+|.+...+.++..++ .+||.+.+.+++.
T Consensus 255 gl~v~i~~pd~e~r~~IL~~~~~~~~~~l~~ev~~~Ia~~~~~~~R~L~g~l~~l~~~~~~~~~~it~~~a~~~L~ 330 (440)
T PRK14088 255 GLVAKLEPPDEETRKKIARKMLEIEHGELPEEVLNFVAENVDDNLRRLRGAIIKLLVYKETTGEEVDLKEAILLLK 330 (440)
T ss_pred CceEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHhccccCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 899999999999999999999999999999999999999999999998887765433 5788888776654
No 107
>PRK09087 hypothetical protein; Validated
Probab=99.78 E-value=1.1e-17 Score=144.09 Aligned_cols=200 Identities=19% Similarity=0.194 Sum_probs=141.2
Q ss_pred CCCCChhhccCCC-CCcchhc---cHHHHHHHHHHHhcCCCCcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCC
Q 017884 38 IKASPWVEKYRPQ-SLADVAA---HRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNAS 113 (364)
Q Consensus 38 ~~~~~~~~~~~p~-~~~~~vg---~~~~~~~l~~~~~~~~~~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~ 113 (364)
..+.++--.+.|. +|++++. +..++..+.++. ....+.++|+||+|+||||+++++++.. ... .++..
T Consensus 5 ~~Ql~l~~~~~~~~~~~~Fi~~~~N~~a~~~l~~~~-~~~~~~l~l~G~~GsGKThLl~~~~~~~-----~~~--~i~~~ 76 (226)
T PRK09087 5 PEQLPLNFSHDPAYGRDDLLVTESNRAAVSLVDHWP-NWPSPVVVLAGPVGSGKTHLASIWREKS-----DAL--LIHPN 76 (226)
T ss_pred CcceeeCCCCCCCCChhceeecCchHHHHHHHHhcc-cCCCCeEEEECCCCCCHHHHHHHHHHhc-----CCE--EecHH
Confidence 3455555555544 7888885 444566555544 2223459999999999999999998764 222 22221
Q ss_pred CCCChHHHHHHHHHHHhcCccccCCccceEEEEEeCCCCCCHHHHHHHHHHHHHhcc-CccEEEEeeccc----cCchhh
Q 017884 114 DDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTK-NTRFALICNQVN----KIIPAL 188 (364)
Q Consensus 114 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~-~~~~Il~~~~~~----~l~~~l 188 (364)
. ...+. +.. . ...+++|||++.+. ..+..|+.++..... ...+|++++... ...+.+
T Consensus 77 ~-~~~~~----~~~-~-----------~~~~l~iDDi~~~~-~~~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL 138 (226)
T PRK09087 77 E-IGSDA----ANA-A-----------AEGPVLIEDIDAGG-FDETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDL 138 (226)
T ss_pred H-cchHH----HHh-h-----------hcCeEEEECCCCCC-CCHHHHHHHHHHHHhCCCeEEEECCCChHHhccccccH
Confidence 1 01111 111 0 12489999999885 345678888876554 455666665332 346889
Q ss_pred hccc---eEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHh----cccCchHHHHHh
Q 017884 189 QSRC---TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMA----SQQITEEAVYLC 261 (364)
Q Consensus 189 ~sr~---~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~a~~~l~~~~~~----~~~i~~~~v~~~ 261 (364)
+||+ .++++.+|+.+++..++++.++..++.++++++++|++.++|+++.+...+..+... ..+||...++++
T Consensus 139 ~SRl~~gl~~~l~~pd~e~~~~iL~~~~~~~~~~l~~ev~~~La~~~~r~~~~l~~~l~~L~~~~~~~~~~it~~~~~~~ 218 (226)
T PRK09087 139 KSRLKAATVVEIGEPDDALLSQVIFKLFADRQLYVDPHVVYYLVSRMERSLFAAQTIVDRLDRLALERKSRITRALAAEV 218 (226)
T ss_pred HHHHhCCceeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 9997 899999999999999999999999999999999999999999999999877655432 357888888776
Q ss_pred cC
Q 017884 262 TG 263 (364)
Q Consensus 262 ~~ 263 (364)
+.
T Consensus 219 l~ 220 (226)
T PRK09087 219 LN 220 (226)
T ss_pred HH
Confidence 64
No 108
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.78 E-value=1.1e-16 Score=152.62 Aligned_cols=205 Identities=16% Similarity=0.220 Sum_probs=147.6
Q ss_pred CCcchh-c--cHHHHHHHHHHHhcC--CCCcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCCCChHHHHHHH
Q 017884 51 SLADVA-A--HRDIVDTIDRLTSEN--RLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQI 125 (364)
Q Consensus 51 ~~~~~v-g--~~~~~~~l~~~~~~~--~~~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i 125 (364)
+|++++ | +..+...+..+.... ..++++||||+|+|||++++++++++...+....++++++... ...+...+
T Consensus 120 tfd~fv~g~~n~~a~~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~--~~~~~~~~ 197 (450)
T PRK00149 120 TFDNFVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKF--TNDFVNAL 197 (450)
T ss_pred cccccccCCCcHHHHHHHHHHHhCcCccCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHH--HHHHHHHH
Confidence 788865 4 333555666666543 2234999999999999999999999876555566667765432 11111111
Q ss_pred H-----HHHhcCccccCCccceEEEEEeCCCCCCH--HHHHHHHHHHHHhccC-ccEEEEeeccc----cCchhhhccc-
Q 017884 126 Q-----DFASTQSFSFGVKASVKLVLLDEADAMTK--DAQFALRRVIEKYTKN-TRFALICNQVN----KIIPALQSRC- 192 (364)
Q Consensus 126 ~-----~~~~~~~~~~~~~~~~~viiiDe~~~l~~--~~~~~L~~~le~~~~~-~~~Il~~~~~~----~l~~~l~sr~- 192 (364)
. .+... +. ...+|+|||+|.+.. ..++.|+.+++..... ..+|++++.+. .+.+.++||+
T Consensus 198 ~~~~~~~~~~~----~~---~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~ 270 (450)
T PRK00149 198 RNNTMEEFKEK----YR---SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFE 270 (450)
T ss_pred HcCcHHHHHHH----Hh---cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhc
Confidence 1 11111 11 366999999999854 3567888888765433 44667765432 3667899997
Q ss_pred --eEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHh----cccCchHHHHHhcCC
Q 017884 193 --TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMA----SQQITEEAVYLCTGN 264 (364)
Q Consensus 193 --~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~a~~~l~~~~~~----~~~i~~~~v~~~~~~ 264 (364)
.++.+.+|+.+++.++++..+...++.++++++++|++.++||+|.+...+..+..+ ...||.+.+.+++..
T Consensus 271 ~gl~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~~~R~l~~~l~~l~~~~~~~~~~it~~~~~~~l~~ 348 (450)
T PRK00149 271 WGLTVDIEPPDLETRIAILKKKAEEEGIDLPDEVLEFIAKNITSNVRELEGALNRLIAYASLTGKPITLELAKEALKD 348 (450)
T ss_pred CCeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHcCcCCCHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHH
Confidence 589999999999999999999999999999999999999999999988888766543 357898888877653
No 109
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.78 E-value=1.3e-17 Score=156.89 Aligned_cols=206 Identities=16% Similarity=0.227 Sum_probs=146.3
Q ss_pred cCCC-CCcchh-ccHH--HHHHHHHHHhc-----C-CCCcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCCC
Q 017884 47 YRPQ-SLADVA-AHRD--IVDTIDRLTSE-----N-RLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDR 116 (364)
Q Consensus 47 ~~p~-~~~~~v-g~~~--~~~~l~~~~~~-----~-~~~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~ 116 (364)
+.|. +|+.++ |... +...+..+... + ...+++||||+|+|||++++++++.+.+.+ ..+++++....
T Consensus 104 l~~~~tFdnFv~g~~N~~a~~~a~~~a~~~~~~~~~~~npl~L~G~~G~GKTHLl~Ai~~~l~~~~--~~v~yi~~~~f- 180 (445)
T PRK12422 104 LDPLMTFANFLVTPENDLPHRILQEFTKVSEQGKGFPFNPIYLFGPEGSGKTHLMQAAVHALRESG--GKILYVRSELF- 180 (445)
T ss_pred CCccccccceeeCCcHHHHHHHHHHHHhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcC--CCEEEeeHHHH-
Confidence 4453 788887 4332 33455555542 1 224499999999999999999999986543 34455543221
Q ss_pred ChHHHHHHHH-----HHHhcCccccCCccceEEEEEeCCCCCCH--HHHHHHHHHHHHhc-cCccEEEEeecc----ccC
Q 017884 117 GIDVVRQQIQ-----DFASTQSFSFGVKASVKLVLLDEADAMTK--DAQFALRRVIEKYT-KNTRFALICNQV----NKI 184 (364)
Q Consensus 117 ~~~~~~~~i~-----~~~~~~~~~~~~~~~~~viiiDe~~~l~~--~~~~~L~~~le~~~-~~~~~Il~~~~~----~~l 184 (364)
...+...+. .+... +. ...+++|||++.+.. ..++.|+.++.... ....+|++++.. ..+
T Consensus 181 -~~~~~~~l~~~~~~~f~~~----~~---~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l 252 (445)
T PRK12422 181 -TEHLVSAIRSGEMQRFRQF----YR---NVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAM 252 (445)
T ss_pred -HHHHHHHHhcchHHHHHHH----cc---cCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhh
Confidence 111111111 11111 11 367999999999964 45778888877543 345677777653 246
Q ss_pred chhhhccc---eEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH---Hh----cccCc
Q 017884 185 IPALQSRC---TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTH---MA----SQQIT 254 (364)
Q Consensus 185 ~~~l~sr~---~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~a~~~l~~~~---~~----~~~i~ 254 (364)
.+.++||+ .++.+.+|+.+++..+|+..+...++.++++++++|+....+|+|.+.+.++.++ .+ ...||
T Consensus 253 ~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k~~~~~~~l~~evl~~la~~~~~dir~L~g~l~~l~~~~a~~~~~~~~i~ 332 (445)
T PRK12422 253 EERLISRFEWGIAIPLHPLTKEGLRSFLERKAEALSIRIEETALDFLIEALSSNVKSLLHALTLLAKRVAYKKLSHQLLY 332 (445)
T ss_pred HHHHHhhhcCCeEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhCCCCC
Confidence 78999997 7899999999999999999999999999999999999999999999999998774 22 24788
Q ss_pred hHHHHHhcC
Q 017884 255 EEAVYLCTG 263 (364)
Q Consensus 255 ~~~v~~~~~ 263 (364)
.+.+++++.
T Consensus 333 ~~~~~~~l~ 341 (445)
T PRK12422 333 VDDIKALLH 341 (445)
T ss_pred HHHHHHHHH
Confidence 888877764
No 110
>PRK06620 hypothetical protein; Validated
Probab=99.77 E-value=2.7e-17 Score=140.43 Aligned_cols=182 Identities=13% Similarity=0.128 Sum_probs=126.7
Q ss_pred CCcchhc---cHHHHHHHHHHHhcC-C-C--CcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCCCChHHHHH
Q 017884 51 SLADVAA---HRDIVDTIDRLTSEN-R-L--PHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQ 123 (364)
Q Consensus 51 ~~~~~vg---~~~~~~~l~~~~~~~-~-~--~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (364)
+|++++. +..+...++.+.... . . ++++||||+|+|||++++++++... ..+ ..... ..
T Consensus 14 tfd~Fvvg~~N~~a~~~~~~~~~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~-----~~~--~~~~~--~~----- 79 (214)
T PRK06620 14 HPDEFIVSSSNDQAYNIIKNWQCGFGVNPYKFTLLIKGPSSSGKTYLTKIWQNLSN-----AYI--IKDIF--FN----- 79 (214)
T ss_pred CchhhEecccHHHHHHHHHHHHHccccCCCcceEEEECCCCCCHHHHHHHHHhccC-----CEE--cchhh--hc-----
Confidence 4555554 456677778777532 1 1 4499999999999999999887641 111 11000 00
Q ss_pred HHHHHHhcCccccCCccceEEEEEeCCCCCCHHHHHHHHHHHHHhccC-ccEEEEeeccc---cCchhhhccce---EEE
Q 017884 124 QIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKN-TRFALICNQVN---KIIPALQSRCT---RFR 196 (364)
Q Consensus 124 ~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~-~~~Il~~~~~~---~l~~~l~sr~~---~i~ 196 (364)
..+ +. ...+++|||+|.+.. ..|+.++.....+ ..++++++.+. .+ +.++||+. ++.
T Consensus 80 --~~~-------~~---~~d~lliDdi~~~~~---~~lf~l~N~~~e~g~~ilits~~~p~~l~l-~~L~SRl~~gl~~~ 143 (214)
T PRK06620 80 --EEI-------LE---KYNAFIIEDIENWQE---PALLHIFNIINEKQKYLLLTSSDKSRNFTL-PDLSSRIKSVLSIL 143 (214)
T ss_pred --hhH-------Hh---cCCEEEEeccccchH---HHHHHHHHHHHhcCCEEEEEcCCCccccch-HHHHHHHhCCceEe
Confidence 011 11 246999999997743 3455554443323 34555553222 34 88999975 899
Q ss_pred ecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHh----cccCchHHHHHhc
Q 017884 197 FAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMA----SQQITEEAVYLCT 262 (364)
Q Consensus 197 ~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~a~~~l~~~~~~----~~~i~~~~v~~~~ 262 (364)
+.+|+.+++..++.+.+...++.++++++++|+..++||+|.+.+.++.+... ...||.+.+++++
T Consensus 144 l~~pd~~~~~~~l~k~~~~~~l~l~~ev~~~L~~~~~~d~r~l~~~l~~l~~~~~~~~~~it~~~~~~~l 213 (214)
T PRK06620 144 LNSPDDELIKILIFKHFSISSVTISRQIIDFLLVNLPREYSKIIEILENINYFALISKRKITISLVKEVL 213 (214)
T ss_pred eCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHh
Confidence 99999999999999999989999999999999999999999999999886532 2458877776654
No 111
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.77 E-value=2.8e-17 Score=151.11 Aligned_cols=208 Identities=22% Similarity=0.384 Sum_probs=141.0
Q ss_pred CCCCCCCChhhccCCCCCcchhccHHHHHHHHHHHh-----cCCCCc--EEEeCCCCccHHHHHHHHHHHHcCCCCCCcE
Q 017884 35 PPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTS-----ENRLPH--LLLYGPPGTGKTSTILAVARKLYGAQYHNMI 107 (364)
Q Consensus 35 ~~~~~~~~~~~~~~p~~~~~~vg~~~~~~~l~~~~~-----~~~~~~--lll~G~~G~GKt~la~~l~~~l~~~~~~~~~ 107 (364)
.......+|.++|+|.+.+++..|+..+..++.|++ ....++ +||+||+||||||+++.+++++ ...+
T Consensus 64 ~~~d~~elW~eKy~P~t~eeLAVHkkKI~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLskel-----g~~~ 138 (634)
T KOG1970|consen 64 EKEDEFELWVEKYKPRTLEELAVHKKKISEVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSKEL-----GYQL 138 (634)
T ss_pred CCccccchhHHhcCcccHHHHhhhHHhHHHHHHHHHHHHHhccCCCceEEEEeCCCCCCchhHHHHHHHhh-----Ccee
Confidence 344556889999999999999999999999999998 555665 7999999999999999999998 3334
Q ss_pred EEEeCCC-------------CCC--hHHHHHHHHHHHhcC----ccc-cC--CccceEEEEEeCCCCCCHH-HHHHHHHH
Q 017884 108 LELNASD-------------DRG--IDVVRQQIQDFASTQ----SFS-FG--VKASVKLVLLDEADAMTKD-AQFALRRV 164 (364)
Q Consensus 108 ~~~~~~~-------------~~~--~~~~~~~i~~~~~~~----~~~-~~--~~~~~~viiiDe~~~l~~~-~~~~L~~~ 164 (364)
.+..... ... ........+.|.... ... .+ ....+++|+|||+...... ....|...
T Consensus 139 ~Ew~Npi~~~~~~~~h~~t~~~~~~~~s~L~~fesFler~~kyg~l~~~g~~~~~~~~liLveDLPn~~~~d~~~~f~ev 218 (634)
T KOG1970|consen 139 IEWSNPINLKEPENLHNETSFLMFPYQSQLAVFESFLLRATKYGSLQMSGDDLRTDKKLILVEDLPNQFYRDDSETFREV 218 (634)
T ss_pred eeecCCccccccccccccchhcccchhhHHHHHHHHHHHHHhhchhhhcccccccCceEEEeeccchhhhhhhHHHHHHH
Confidence 4433110 011 111111222222211 110 01 1124679999998777533 44455555
Q ss_pred HHHhcc---CccEEEEeecc--------ccCchhhh--ccceEEEecCCChHHHHHHHHHHHHHcCCCCC------HHHH
Q 017884 165 IEKYTK---NTRFALICNQV--------NKIIPALQ--SRCTRFRFAPLEPVHVTERLKHVIEAEGLDVT------EGGL 225 (364)
Q Consensus 165 le~~~~---~~~~Il~~~~~--------~~l~~~l~--sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~------~~~~ 225 (364)
|..+.. ...++++|+.. ......+. -|...+.|.|..+.-+++.|..+|..++...+ ...+
T Consensus 219 L~~y~s~g~~PlIf~iTd~~~~g~nnq~rlf~~d~q~~~ri~~IsFNPIa~T~MKK~L~ric~~e~~~~s~~k~~~~~~v 298 (634)
T KOG1970|consen 219 LRLYVSIGRCPLIFIITDSLSNGNNNQDRLFPKDIQEEPRISNISFNPIAPTIMKKFLKRICRIEANKKSGIKVPDTAEV 298 (634)
T ss_pred HHHHHhcCCCcEEEEEeccccCCCcchhhhchhhhhhccCcceEeecCCcHHHHHHHHHHHHHHhcccccCCcCchhHHH
Confidence 554432 22333344211 12333333 34578999999999999999999998877766 6778
Q ss_pred HHHHHHcCCCHHHHHHHHHHHH
Q 017884 226 AALVRLCNGDMRKALNILQSTH 247 (364)
Q Consensus 226 ~~l~~~~~g~~r~a~~~l~~~~ 247 (364)
+.++..++||+|.|++.||...
T Consensus 299 ~~i~~~s~GDIRsAInsLQlss 320 (634)
T KOG1970|consen 299 ELICQGSGGDIRSAINSLQLSS 320 (634)
T ss_pred HHHHHhcCccHHHHHhHhhhhc
Confidence 9999999999999999999875
No 112
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.77 E-value=2.4e-17 Score=147.03 Aligned_cols=187 Identities=17% Similarity=0.233 Sum_probs=134.4
Q ss_pred chhccHHHHHHHHHHHh----------cC-----CCCcEEEeCCCCccHHHHHHHHHHHHcCCCC--CCcEEEEeCCCCC
Q 017884 54 DVAAHRDIVDTIDRLTS----------EN-----RLPHLLLYGPPGTGKTSTILAVARKLYGAQY--HNMILELNASDDR 116 (364)
Q Consensus 54 ~~vg~~~~~~~l~~~~~----------~~-----~~~~lll~G~~G~GKt~la~~l~~~l~~~~~--~~~~~~~~~~~~~ 116 (364)
+++|.+++++.+..+.. .| ...|++|+||||||||++|+++++.+...+. ...++.+++....
T Consensus 23 ~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l~ 102 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDLV 102 (284)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHHh
Confidence 68999888888766532 11 1125999999999999999999998854432 2245566543211
Q ss_pred Ch--HHHHHHHHHHHhcCccccCCccceEEEEEeCCCCC---------CHHHHHHHHHHHHHhccCccEEEEeecc--c-
Q 017884 117 GI--DVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAM---------TKDAQFALRRVIEKYTKNTRFALICNQV--N- 182 (364)
Q Consensus 117 ~~--~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l---------~~~~~~~L~~~le~~~~~~~~Il~~~~~--~- 182 (364)
+. ......+...... ..+++++|||++.+ ..+.++.|++.|+....++++|++++.. .
T Consensus 103 ~~~~g~~~~~~~~~~~~--------a~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~ 174 (284)
T TIGR02880 103 GQYIGHTAPKTKEILKR--------AMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDS 174 (284)
T ss_pred HhhcccchHHHHHHHHH--------ccCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHH
Confidence 00 0000111111111 13579999999987 2456789999999877777777776432 2
Q ss_pred --cCchhhhccc-eEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--------cCCCHHHHHHHHHHHHH
Q 017884 183 --KIIPALQSRC-TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRL--------CNGDMRKALNILQSTHM 248 (364)
Q Consensus 183 --~l~~~l~sr~-~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~--------~~g~~r~a~~~l~~~~~ 248 (364)
.+.+.+.+|+ ..++|++++.+++..++...+++.+..+++++.+.+..+ +.||.|.+.+.++.+..
T Consensus 175 ~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~~~~~~l~~~a~~~L~~~l~~~~~~~~~GN~R~lrn~ve~~~~ 251 (284)
T TIGR02880 175 FFESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLKEQQYRFSAEAEEAFADYIALRRTQPHFANARSIRNAIDRARL 251 (284)
T ss_pred HHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHH
Confidence 3478999998 689999999999999999999999899999999988876 36999999999987764
No 113
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.76 E-value=1.1e-17 Score=143.69 Aligned_cols=190 Identities=18% Similarity=0.300 Sum_probs=131.4
Q ss_pred CCcchh-c--cHHHHHHHHHHHhcCCC--CcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCCCChHHHHHHH
Q 017884 51 SLADVA-A--HRDIVDTIDRLTSENRL--PHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQI 125 (364)
Q Consensus 51 ~~~~~v-g--~~~~~~~l~~~~~~~~~--~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i 125 (364)
+|+.++ | +..+............. ..++||||+|+|||++++++++++........++++++... ...+.+.+
T Consensus 6 tFdnfv~g~~N~~a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f--~~~~~~~~ 83 (219)
T PF00308_consen 6 TFDNFVVGESNELAYAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEF--IREFADAL 83 (219)
T ss_dssp SCCCS--TTTTHHHHHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHH--HHHHHHHH
T ss_pred ccccCCcCCcHHHHHHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHH--HHHHHHHH
Confidence 688875 4 44555566666655432 34899999999999999999999865545566777764321 11111111
Q ss_pred -----HHHHhcCccccCCccceEEEEEeCCCCCCHH--HHHHHHHHHHHhccC-ccEEEEeecc----ccCchhhhcc--
Q 017884 126 -----QDFASTQSFSFGVKASVKLVLLDEADAMTKD--AQFALRRVIEKYTKN-TRFALICNQV----NKIIPALQSR-- 191 (364)
Q Consensus 126 -----~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~--~~~~L~~~le~~~~~-~~~Il~~~~~----~~l~~~l~sr-- 191 (364)
..+... +. ...+++|||++.+... .++.|+.+++....+ ..+|++++.. ..+.+.+.||
T Consensus 84 ~~~~~~~~~~~----~~---~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~ 156 (219)
T PF00308_consen 84 RDGEIEEFKDR----LR---SADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLS 156 (219)
T ss_dssp HTTSHHHHHHH----HC---TSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHH
T ss_pred Hcccchhhhhh----hh---cCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHh
Confidence 111111 11 3679999999999764 488999999876544 4577777433 2456789998
Q ss_pred -ceEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Q 017884 192 -CTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMA 249 (364)
Q Consensus 192 -~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~a~~~l~~~~~~ 249 (364)
+.++.+.+|+.++..+++.+.+...|+.++++++++|++...+|+|.+...++++..+
T Consensus 157 ~Gl~~~l~~pd~~~r~~il~~~a~~~~~~l~~~v~~~l~~~~~~~~r~L~~~l~~l~~~ 215 (219)
T PF00308_consen 157 WGLVVELQPPDDEDRRRILQKKAKERGIELPEEVIEYLARRFRRDVRELEGALNRLDAY 215 (219)
T ss_dssp CSEEEEE----HHHHHHHHHHHHHHTT--S-HHHHHHHHHHTTSSHHHHHHHHHHHHHH
T ss_pred hcchhhcCCCCHHHHHHHHHHHHHHhCCCCcHHHHHHHHHhhcCCHHHHHHHHHHHHHH
Confidence 4789999999999999999999999999999999999999999999999999887654
No 114
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.76 E-value=4.1e-17 Score=163.79 Aligned_cols=216 Identities=16% Similarity=0.186 Sum_probs=157.7
Q ss_pred CCChhhccCCCCCcchhccHHHHHHHHHHHhcCCCCcEEEeCCCCccHHHHHHHHHHHHcCCCC-----CCcEEEEeCCC
Q 017884 40 ASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQY-----HNMILELNASD 114 (364)
Q Consensus 40 ~~~~~~~~~p~~~~~~vg~~~~~~~l~~~~~~~~~~~lll~G~~G~GKt~la~~l~~~l~~~~~-----~~~~~~~~~~~ 114 (364)
..++.++.||..+++++|+++.+..+...+.....++++|+||||+|||++++.+++.+..... ...++.++...
T Consensus 169 ~~~l~~~~r~~~l~~~igr~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~~ 248 (731)
T TIGR02639 169 TVDLTEKAKNGKIDPLIGREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMGS 248 (731)
T ss_pred hhhHHHHHhcCCCCcccCcHHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHHH
Confidence 5678899999999999999999999999888888888999999999999999999999744321 33455555322
Q ss_pred C----CChHHHHHHHHHHHhcCccccCCccceEEEEEeCCCCCCH---------HHHHHHHHHHHHhccCccEEEEeecc
Q 017884 115 D----RGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTK---------DAQFALRRVIEKYTKNTRFALICNQV 181 (364)
Q Consensus 115 ~----~~~~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~~---------~~~~~L~~~le~~~~~~~~Il~~~~~ 181 (364)
. .....+.+.+......... ..+.|++|||+|.+.. +.++.|...++. ....+|.+|+..
T Consensus 249 l~a~~~~~g~~e~~l~~i~~~~~~-----~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~--g~i~~IgaTt~~ 321 (731)
T TIGR02639 249 LLAGTKYRGDFEERLKAVVSEIEK-----EPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSS--GKLRCIGSTTYE 321 (731)
T ss_pred HhhhccccchHHHHHHHHHHHHhc-----cCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhC--CCeEEEEecCHH
Confidence 1 1112333344443322110 1367999999998852 346677777763 356677777642
Q ss_pred -----ccCchhhhccceEEEecCCChHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCC---C---HHHHHHHHHHH
Q 017884 182 -----NKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEA----EGLDVTEGGLAALVRLCNG---D---MRKALNILQST 246 (364)
Q Consensus 182 -----~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~----~~~~i~~~~~~~l~~~~~g---~---~r~a~~~l~~~ 246 (364)
...++++.+||+.+.+++|+.++...+++..... .++.++++++..++..++. + |++|+++++.+
T Consensus 322 e~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~ryi~~r~~P~kai~lld~a 401 (731)
T TIGR02639 322 EYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELSARYINDRFLPDKAIDVIDEA 401 (731)
T ss_pred HHHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhhcccccccCCHHHHHHHHHh
Confidence 2568899999999999999999999999977654 4678999999999988853 3 88999999766
Q ss_pred HHhc---------ccCchHHHHHhc
Q 017884 247 HMAS---------QQITEEAVYLCT 262 (364)
Q Consensus 247 ~~~~---------~~i~~~~v~~~~ 262 (364)
+... ..++.++|..++
T Consensus 402 ~a~~~~~~~~~~~~~v~~~~i~~~i 426 (731)
T TIGR02639 402 GASFRLRPKAKKKANVSVKDIENVV 426 (731)
T ss_pred hhhhhcCcccccccccCHHHHHHHH
Confidence 5421 136666666554
No 115
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.76 E-value=6.4e-17 Score=152.37 Aligned_cols=204 Identities=15% Similarity=0.221 Sum_probs=143.1
Q ss_pred CCcchh-ccHH--HHHHHHHHHhcCC--CCcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCCCChHHHHHHH
Q 017884 51 SLADVA-AHRD--IVDTIDRLTSENR--LPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQI 125 (364)
Q Consensus 51 ~~~~~v-g~~~--~~~~l~~~~~~~~--~~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i 125 (364)
+|++++ |... +...+..+..... ..+++||||+|+|||++++++++++........++++++... ...+...+
T Consensus 108 tfd~fi~g~~n~~a~~~~~~~~~~~~~~~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~--~~~~~~~~ 185 (405)
T TIGR00362 108 TFDNFVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKF--TNDFVNAL 185 (405)
T ss_pred cccccccCCcHHHHHHHHHHHHhCcCccCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHH--HHHHHHHH
Confidence 677744 5333 3445555555422 234899999999999999999999865544556667665431 11111111
Q ss_pred -----HHHHhcCccccCCccceEEEEEeCCCCCCH--HHHHHHHHHHHHhc-cCccEEEEeeccc----cCchhhhccc-
Q 017884 126 -----QDFASTQSFSFGVKASVKLVLLDEADAMTK--DAQFALRRVIEKYT-KNTRFALICNQVN----KIIPALQSRC- 192 (364)
Q Consensus 126 -----~~~~~~~~~~~~~~~~~~viiiDe~~~l~~--~~~~~L~~~le~~~-~~~~~Il~~~~~~----~l~~~l~sr~- 192 (364)
..+... +. ...+|+|||++.+.. ..++.|+.+++... .+..+|++++... .+.+.++||+
T Consensus 186 ~~~~~~~~~~~----~~---~~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~ 258 (405)
T TIGR00362 186 RNNKMEEFKEK----YR---SVDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFE 258 (405)
T ss_pred HcCCHHHHHHH----HH---hCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhcc
Confidence 111111 11 356999999999864 35677888887653 3456777776432 4567888986
Q ss_pred --eEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhc----ccCchHHHHHhcC
Q 017884 193 --TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMAS----QQITEEAVYLCTG 263 (364)
Q Consensus 193 --~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~a~~~l~~~~~~~----~~i~~~~v~~~~~ 263 (364)
..+.|++|+.++...++...+...++.++++++++|++.+.||+|.+...+..+..++ ..||.+.+.+++.
T Consensus 259 ~g~~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~~~r~l~~~l~~l~~~a~~~~~~it~~~~~~~L~ 335 (405)
T TIGR00362 259 WGLVVDIEPPDLETRLAILQKKAEEEGLELPDEVLEFIAKNIRSNVRELEGALNRLLAYASLTGKPITLELAKEALK 335 (405)
T ss_pred CCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 5799999999999999999999999999999999999999999999877776665432 5788887777654
No 116
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=99.73 E-value=1.1e-15 Score=128.34 Aligned_cols=178 Identities=16% Similarity=0.169 Sum_probs=138.9
Q ss_pred HHHHHHHHhcCCCCc-EEEeCCCC-ccHHHHHHHHHHHHcCCC----CCCcEEEEeCC-------CCCChHHHHHHHHHH
Q 017884 62 VDTIDRLTSENRLPH-LLLYGPPG-TGKTSTILAVARKLYGAQ----YHNMILELNAS-------DDRGIDVVRQQIQDF 128 (364)
Q Consensus 62 ~~~l~~~~~~~~~~~-lll~G~~G-~GKt~la~~l~~~l~~~~----~~~~~~~~~~~-------~~~~~~~~~~~i~~~ 128 (364)
+..|...++.++..| ++|.|..+ +||..++..+++.+.|.+ .++++..+... ...+++.+|+.....
T Consensus 2 ~~~L~~~iq~~kLshAYLfeG~n~~~~~~~~~~f~~~~l~~~~i~~~~HPD~~~I~pe~~~~~~~~~I~IdqIReL~~~l 81 (263)
T PRK06581 2 IERLEFNLKHNKLYNSWLIEAENIEQALKDLEKFIYIKLFKNSIPLENNPDYHFIARETSATSNAKNISIEQIRKLQDFL 81 (263)
T ss_pred hHHHHHHHHcCcchheeeEeCCChhhHHHHHHHHHHHHHhccCcccCCCCCEEEEeccccccccCCcccHHHHHHHHHHH
Confidence 457888999999999 89999997 999999999999987742 33455555432 245788888855544
Q ss_pred HhcCccccCCccceEEEEEeCCCCCCHHHHHHHHHHHHHhccCccEEEEeeccccCchhhhccceEEEecCCChHHHHHH
Q 017884 129 ASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTER 208 (364)
Q Consensus 129 ~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~ 208 (364)
.. .+. .++++|++|+++|.|+..+.++|++++|+||.++.+|++|+.+..+.++++|||+.+.|..+......++
T Consensus 82 ~~-~p~----~g~~KViII~~ae~mt~~AANALLKtLEEPP~~t~fILit~~~~~LLpTIrSRCq~i~~~~p~~~~~~e~ 156 (263)
T PRK06581 82 SK-TSA----ISGYKVAIIYSAELMNLNAANSCLKILEDAPKNSYIFLITSRAASIISTIRSRCFKINVRSSILHAYNEL 156 (263)
T ss_pred hh-Ccc----cCCcEEEEEechHHhCHHHHHHHHHhhcCCCCCeEEEEEeCChhhCchhHhhceEEEeCCCCCHHHHHHH
Confidence 33 232 2369999999999999999999999999999999999999999999999999999999999999887777
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 017884 209 LKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTH 247 (364)
Q Consensus 209 l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~a~~~l~~~~ 247 (364)
....+. ...+...++.|.+...-|....+...+.+.
T Consensus 157 ~~~~~~---p~~~~~~l~~i~~~~~~d~~~w~~~~~~~~ 192 (263)
T PRK06581 157 YSQFIQ---PIADNKTLDFINRFTTKDRELWLDFIDNLL 192 (263)
T ss_pred HHHhcc---cccccHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 665542 234556678888776666666555555443
No 117
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.72 E-value=3.5e-16 Score=150.77 Aligned_cols=206 Identities=22% Similarity=0.261 Sum_probs=136.3
Q ss_pred hhhccCCCCCcchhccHHHHHHHHHHHh-----------cCCCC-cEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEE
Q 017884 43 WVEKYRPQSLADVAAHRDIVDTIDRLTS-----------ENRLP-HLLLYGPPGTGKTSTILAVARKLYGAQYHNMILEL 110 (364)
Q Consensus 43 ~~~~~~p~~~~~~vg~~~~~~~l~~~~~-----------~~~~~-~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~ 110 (364)
+.+.....+|++++|.++++..+..++. +...| +++|+||||||||+++++++.+. ...++.+
T Consensus 45 ~~~~~~~~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~-----~~~~~~i 119 (495)
T TIGR01241 45 LNEEKPKVTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA-----GVPFFSI 119 (495)
T ss_pred ccCCCCCCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc-----CCCeeec
Confidence 3444456699999999999888776654 12223 49999999999999999999986 3445555
Q ss_pred eCCCC------CChHHHHHHHHHHHhcCccccCCccceEEEEEeCCCCCCHH--------------HHHHHHHHHHHhcc
Q 017884 111 NASDD------RGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKD--------------AQFALRRVIEKYTK 170 (364)
Q Consensus 111 ~~~~~------~~~~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~--------------~~~~L~~~le~~~~ 170 (364)
+++.. .+...++..+...... .+.||+|||+|.+... ..+.|+..|+....
T Consensus 120 ~~~~~~~~~~g~~~~~l~~~f~~a~~~---------~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~ 190 (495)
T TIGR01241 120 SGSDFVEMFVGVGASRVRDLFEQAKKN---------APCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGT 190 (495)
T ss_pred cHHHHHHHHhcccHHHHHHHHHHHHhc---------CCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccC
Confidence 54321 1222333333332211 3679999999998531 23455666654432
Q ss_pred --CccEEEEeeccccCchhhhc--cc-eEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHH
Q 017884 171 --NTRFALICNQVNKIIPALQS--RC-TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNG-DMRKALNILQ 244 (364)
Q Consensus 171 --~~~~Il~~~~~~~l~~~l~s--r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g-~~r~a~~~l~ 244 (364)
.+.+|.+||.+..+++++.+ |+ ..+.++.|+.++..++++..+...+.. ++..+..++..+.| +.+.+.++++
T Consensus 191 ~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~-~~~~l~~la~~t~G~sgadl~~l~~ 269 (495)
T TIGR01241 191 NTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLA-PDVDLKAVARRTPGFSGADLANLLN 269 (495)
T ss_pred CCCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCC-cchhHHHHHHhCCCCCHHHHHHHHH
Confidence 35577778999999999987 55 679999999999999999888755443 34456778877754 3344444443
Q ss_pred HHHH-----hcccCchHHHHHhcC
Q 017884 245 STHM-----ASQQITEEAVYLCTG 263 (364)
Q Consensus 245 ~~~~-----~~~~i~~~~v~~~~~ 263 (364)
.+.. ....|+.+++..++.
T Consensus 270 eA~~~a~~~~~~~i~~~~l~~a~~ 293 (495)
T TIGR01241 270 EAALLAARKNKTEITMNDIEEAID 293 (495)
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHH
Confidence 3322 224689998877654
No 118
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.72 E-value=2.4e-16 Score=159.31 Aligned_cols=203 Identities=15% Similarity=0.185 Sum_probs=147.8
Q ss_pred CCChhhccCCCCCcchhccHHHHHHHHHHHhcCCCCcEEEeCCCCccHHHHHHHHHHHHcCCCC-----CCcEEEEeCCC
Q 017884 40 ASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQY-----HNMILELNASD 114 (364)
Q Consensus 40 ~~~~~~~~~p~~~~~~vg~~~~~~~l~~~~~~~~~~~lll~G~~G~GKt~la~~l~~~l~~~~~-----~~~~~~~~~~~ 114 (364)
..++.++.||..+++++|+++.+..+...+.....++.+|+||||+|||++++.+++.+..... ...++.++...
T Consensus 174 ~~~L~~~~r~~~ld~~iGr~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~ 253 (852)
T TIGR03345 174 TTDLTAQAREGKIDPVLGRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGL 253 (852)
T ss_pred hhhHHHHhcCCCCCcccCCHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhh
Confidence 3467888899999999999999999999888888889999999999999999999999853321 23344333322
Q ss_pred C----CChHHHHHHHHHHHhcCccccCCccceEEEEEeCCCCCCH-----H---HHHHHHHHHHHhccCccEEEEeecc-
Q 017884 115 D----RGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTK-----D---AQFALRRVIEKYTKNTRFALICNQV- 181 (364)
Q Consensus 115 ~----~~~~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~~-----~---~~~~L~~~le~~~~~~~~Il~~~~~- 181 (364)
. .....+...+........- . ..+.|++|||+|.+.. . ..+.|...++. ....+|.+|+..
T Consensus 254 l~ag~~~~ge~e~~lk~ii~e~~~-~---~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~--G~l~~IgaTT~~e 327 (852)
T TIGR03345 254 LQAGASVKGEFENRLKSVIDEVKA-S---PQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALAR--GELRTIAATTWAE 327 (852)
T ss_pred hhcccccchHHHHHHHHHHHHHHh-c---CCCeEEEEeChHHhccCCCccccccHHHHhhHHhhC--CCeEEEEecCHHH
Confidence 1 1222333333333222110 0 1467999999999963 2 23457777664 356677777642
Q ss_pred ----ccCchhhhccceEEEecCCChHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCC------CHHHHHHHHHHHH
Q 017884 182 ----NKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEA----EGLDVTEGGLAALVRLCNG------DMRKALNILQSTH 247 (364)
Q Consensus 182 ----~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~----~~~~i~~~~~~~l~~~~~g------~~r~a~~~l~~~~ 247 (364)
...+++|.+||+.+.+++|+.++...+|+..... .++.++++++..++..+.+ -|.+|+++++.++
T Consensus 328 ~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi~~r~LPDKAIdlldea~ 407 (852)
T TIGR03345 328 YKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYIPGRQLPDKAVSLLDTAC 407 (852)
T ss_pred HhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccccccccCccHHHHHHHHHH
Confidence 3578999999999999999999999997666543 4688999999999999863 4888999998765
Q ss_pred H
Q 017884 248 M 248 (364)
Q Consensus 248 ~ 248 (364)
.
T Consensus 408 a 408 (852)
T TIGR03345 408 A 408 (852)
T ss_pred H
Confidence 4
No 119
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.70 E-value=1.7e-15 Score=143.60 Aligned_cols=202 Identities=16% Similarity=0.172 Sum_probs=135.8
Q ss_pred CCCcchhccHHHHHHHHHHHh--------cC-CCC-cEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCCC---
Q 017884 50 QSLADVAAHRDIVDTIDRLTS--------EN-RLP-HLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDR--- 116 (364)
Q Consensus 50 ~~~~~~vg~~~~~~~l~~~~~--------~~-~~~-~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~--- 116 (364)
.+|+++.|.+.+++.+..... .| ..| ++|||||||||||.+|+++++++ +..++.++.....
T Consensus 225 ~~~~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~-----~~~~~~l~~~~l~~~~ 299 (489)
T CHL00195 225 EKISDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDW-----QLPLLRLDVGKLFGGI 299 (489)
T ss_pred CCHHHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh-----CCCEEEEEhHHhcccc
Confidence 579999999988887765321 12 223 39999999999999999999997 4455565543211
Q ss_pred ---ChHHHHHHHHHHHhcCccccCCccceEEEEEeCCCCCCH------------HHHHHHHHHHHHhccCccEEEEeecc
Q 017884 117 ---GIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTK------------DAQFALRRVIEKYTKNTRFALICNQV 181 (364)
Q Consensus 117 ---~~~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~~------------~~~~~L~~~le~~~~~~~~Il~~~~~ 181 (364)
+...+++.+.. +.. ..+.||+|||+|.+.. .....|+..|++....+.+|.+||.+
T Consensus 300 vGese~~l~~~f~~-A~~--------~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTTN~~ 370 (489)
T CHL00195 300 VGESESRMRQMIRI-AEA--------LSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATANNI 370 (489)
T ss_pred cChHHHHHHHHHHH-HHh--------cCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEecCCh
Confidence 11223333322 211 1468999999997742 12345677777666566677888999
Q ss_pred ccCchhhhc--cc-eEEEecCCChHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCC----CHHHHHHHHHHHHH-hccc
Q 017884 182 NKIIPALQS--RC-TRFRFAPLEPVHVTERLKHVIEAEGLD-VTEGGLAALVRLCNG----DMRKALNILQSTHM-ASQQ 252 (364)
Q Consensus 182 ~~l~~~l~s--r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~-i~~~~~~~l~~~~~g----~~r~a~~~l~~~~~-~~~~ 252 (364)
+.+++++.+ |+ ..+.++.|+.++..++++..+.+.+.. .++..++.|++.+.| |++.++...-..+. ....
T Consensus 371 ~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~lv~eA~~~A~~~~~~ 450 (489)
T CHL00195 371 DLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQSIIEAMYIAFYEKRE 450 (489)
T ss_pred hhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcCCC
Confidence 999999976 77 678999999999999999998876433 345567888888754 45444443322222 2357
Q ss_pred CchHHHHHhcCCC
Q 017884 253 ITEEAVYLCTGNP 265 (364)
Q Consensus 253 i~~~~v~~~~~~~ 265 (364)
++.+++..++...
T Consensus 451 lt~~dl~~a~~~~ 463 (489)
T CHL00195 451 FTTDDILLALKQF 463 (489)
T ss_pred cCHHHHHHHHHhc
Confidence 7888777665443
No 120
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.70 E-value=7.5e-16 Score=143.81 Aligned_cols=208 Identities=19% Similarity=0.258 Sum_probs=133.4
Q ss_pred CCChhhccCCCCCcchhccHHHHHHHHHHHhc-----------C--CCCcEEEeCCCCccHHHHHHHHHHHHcCCCCCCc
Q 017884 40 ASPWVEKYRPQSLADVAAHRDIVDTIDRLTSE-----------N--RLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNM 106 (364)
Q Consensus 40 ~~~~~~~~~p~~~~~~vg~~~~~~~l~~~~~~-----------~--~~~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~ 106 (364)
+.++++++.+.+|+++.|.+..++.+...+.. + ...+++||||||||||++|+++++.+. ..
T Consensus 170 ~~~~~~~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~-----~~ 244 (438)
T PTZ00361 170 SVMKVDKAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETS-----AT 244 (438)
T ss_pred hhcccccCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhC-----CC
Confidence 34567777788999999999999998887742 1 222489999999999999999999873 34
Q ss_pred EEEEeCCCCC------ChHHHHHHHHHHHhcCccccCCccceEEEEEeCCCCCCH-----------HHHHHHHHHHHHh-
Q 017884 107 ILELNASDDR------GIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTK-----------DAQFALRRVIEKY- 168 (364)
Q Consensus 107 ~~~~~~~~~~------~~~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~~-----------~~~~~L~~~le~~- 168 (364)
++.+.++... +...++..+..... ..+.+|+|||+|.+.. ..+..++.++...
T Consensus 245 fi~V~~seL~~k~~Ge~~~~vr~lF~~A~~---------~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ld 315 (438)
T PTZ00361 245 FLRVVGSELIQKYLGDGPKLVRELFRVAEE---------NAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLD 315 (438)
T ss_pred EEEEecchhhhhhcchHHHHHHHHHHHHHh---------CCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHh
Confidence 5555544321 11112222221111 1467999999988741 2234444444332
Q ss_pred ----ccCccEEEEeeccccCchhhhc--cc-eEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc----CCCHH
Q 017884 169 ----TKNTRFALICNQVNKIIPALQS--RC-TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLC----NGDMR 237 (364)
Q Consensus 169 ----~~~~~~Il~~~~~~~l~~~l~s--r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~----~g~~r 237 (364)
..++.+|++||.++.+++++.+ |+ ..+.|++|+.++..+++...+.+..+.- +-.++.++..+ +.+++
T Consensus 316 g~~~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~-dvdl~~la~~t~g~sgAdI~ 394 (438)
T PTZ00361 316 GFDSRGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAE-DVDLEEFIMAKDELSGADIK 394 (438)
T ss_pred hhcccCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCc-CcCHHHHHHhcCCCCHHHHH
Confidence 3467788999999999998875 55 6799999999999999998876554321 12345556554 33444
Q ss_pred HHHHHHHHHHHh--cccCchHHHHHhc
Q 017884 238 KALNILQSTHMA--SQQITEEAVYLCT 262 (364)
Q Consensus 238 ~a~~~l~~~~~~--~~~i~~~~v~~~~ 262 (364)
.++......+.. ...|+.+++..++
T Consensus 395 ~i~~eA~~~Alr~~r~~Vt~~D~~~A~ 421 (438)
T PTZ00361 395 AICTEAGLLALRERRMKVTQADFRKAK 421 (438)
T ss_pred HHHHHHHHHHHHhcCCccCHHHHHHHH
Confidence 444333222222 2356777665543
No 121
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=1.2e-15 Score=143.44 Aligned_cols=185 Identities=21% Similarity=0.260 Sum_probs=131.8
Q ss_pred CCCCCcchhccHHHHHHHHHHHh-----------cC-CCC-cEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCC
Q 017884 48 RPQSLADVAAHRDIVDTIDRLTS-----------EN-RLP-HLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASD 114 (364)
Q Consensus 48 ~p~~~~~~vg~~~~~~~l~~~~~-----------~~-~~~-~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~ 114 (364)
...+|+++-|.++++..|++.+. -| ..| .+|||||||||||++|++++++. +.+|+.+.+..
T Consensus 429 p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~-----~~nFlsvkgpE 503 (693)
T KOG0730|consen 429 PNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEA-----GMNFLSVKGPE 503 (693)
T ss_pred CCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhh-----cCCeeeccCHH
Confidence 44689999999999999987764 22 222 39999999999999999999996 55666664432
Q ss_pred ------CCChHHHHHHHHHHHhcCccccCCccceEEEEEeCCCCCCHH-----------HHHHHHHHHHHhc--cCccEE
Q 017884 115 ------DRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKD-----------AQFALRRVIEKYT--KNTRFA 175 (364)
Q Consensus 115 ------~~~~~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~-----------~~~~L~~~le~~~--~~~~~I 175 (364)
..+...+++.+....+. .+.||++||+|.+... ..+.|+.-|+... .++.+|
T Consensus 504 L~sk~vGeSEr~ir~iF~kAR~~---------aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~Vi 574 (693)
T KOG0730|consen 504 LFSKYVGESERAIREVFRKARQV---------APCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVI 574 (693)
T ss_pred HHHHhcCchHHHHHHHHHHHhhc---------CCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEEE
Confidence 22334555544443332 3579999999999532 3455666666433 456677
Q ss_pred EEeeccccCchhhhc--cc-eEEEecCCChHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCCC-HHHHHHHHHHHHH
Q 017884 176 LICNQVNKIIPALQS--RC-TRFRFAPLEPVHVTERLKHVIEAEGLDVTEG-GLAALVRLCNGD-MRKALNILQSTHM 248 (364)
Q Consensus 176 l~~~~~~~l~~~l~s--r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~-~~~~l~~~~~g~-~r~a~~~l~~~~~ 248 (364)
.+||.++.+++++.+ |+ +++++++|+.+...++++..+++.. ++++ .++.|++.+.|- -..+..+++.++.
T Consensus 575 AATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp--~~~~vdl~~La~~T~g~SGAel~~lCq~A~~ 650 (693)
T KOG0730|consen 575 AATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMP--FSEDVDLEELAQATEGYSGAEIVAVCQEAAL 650 (693)
T ss_pred eccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCC--CCccccHHHHHHHhccCChHHHHHHHHHHHH
Confidence 788999999999999 77 7899999999999999998887554 4555 678888877543 3333344444443
No 122
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=1.1e-15 Score=142.07 Aligned_cols=178 Identities=23% Similarity=0.283 Sum_probs=131.8
Q ss_pred CCcchhccHHHHHHHHHHHhc----------CC-CCc-EEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCC---
Q 017884 51 SLADVAAHRDIVDTIDRLTSE----------NR-LPH-LLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDD--- 115 (364)
Q Consensus 51 ~~~~~vg~~~~~~~l~~~~~~----------~~-~~~-lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~--- 115 (364)
+|.++-|.+..+..|...+.. |- +|. +||+||||||||.+|++++.++ ...++.++++..
T Consensus 188 ~f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel-----~vPf~~isApeivSG 262 (802)
T KOG0733|consen 188 SFSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGEL-----GVPFLSISAPEIVSG 262 (802)
T ss_pred chhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhc-----CCceEeecchhhhcc
Confidence 599999999999988777642 22 222 9999999999999999999998 667777766442
Q ss_pred ---CChHHHHHHHHHHHhcCccccCCccceEEEEEeCCCCCCHH-----------HHHHHHHHHHHhcc------CccEE
Q 017884 116 ---RGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKD-----------AQFALRRVIEKYTK------NTRFA 175 (364)
Q Consensus 116 ---~~~~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~-----------~~~~L~~~le~~~~------~~~~I 175 (364)
.....+++.+.+.... .++|+||||+|.+++. ....|+..|++... .+.+|
T Consensus 263 vSGESEkkiRelF~~A~~~---------aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVI 333 (802)
T KOG0733|consen 263 VSGESEKKIRELFDQAKSN---------APCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKGDPVLVI 333 (802)
T ss_pred cCcccHHHHHHHHHHHhcc---------CCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCCCCeEEE
Confidence 2344566655554432 4789999999999743 23557888887542 35577
Q ss_pred EEeeccccCchhhhc--cc-eEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHH
Q 017884 176 LICNQVNKIIPALQS--RC-TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNIL 243 (364)
Q Consensus 176 l~~~~~~~l~~~l~s--r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~a~~~l 243 (364)
.+||.++.++++|++ |+ ..|.+.-|++....++|+.+|+...+.- +=....|+..+.|-++.-+..|
T Consensus 334 gATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g-~~d~~qlA~lTPGfVGADL~AL 403 (802)
T KOG0733|consen 334 GATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSG-DFDFKQLAKLTPGFVGADLMAL 403 (802)
T ss_pred ecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCC-CcCHHHHHhcCCCccchhHHHH
Confidence 788999999999988 45 5699999999999999999998544432 2236778998887666555444
No 123
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.69 E-value=2.7e-15 Score=139.87 Aligned_cols=171 Identities=23% Similarity=0.341 Sum_probs=117.4
Q ss_pred CCCCcchhccHHHHHHHHHHHhc-------------CCCCcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCC
Q 017884 49 PQSLADVAAHRDIVDTIDRLTSE-------------NRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDD 115 (364)
Q Consensus 49 p~~~~~~vg~~~~~~~l~~~~~~-------------~~~~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~ 115 (364)
..+|+++.|.+..++.+...+.. ..+.+++||||||||||++|+++++.+. ..++.++++..
T Consensus 127 ~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~-----~~~i~v~~~~l 201 (389)
T PRK03992 127 NVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETN-----ATFIRVVGSEL 201 (389)
T ss_pred CCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhC-----CCEEEeehHHH
Confidence 34789999999999998887632 1233499999999999999999999873 44566655432
Q ss_pred C------ChHHHHHHHHHHHhcCccccCCccceEEEEEeCCCCCC-----------HHHHHHHHHHHHHhc-----cCcc
Q 017884 116 R------GIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMT-----------KDAQFALRRVIEKYT-----KNTR 173 (364)
Q Consensus 116 ~------~~~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~-----------~~~~~~L~~~le~~~-----~~~~ 173 (364)
. +...++..+. .+.. ..+.+|+|||+|.+. ...+..+..++.... .++.
T Consensus 202 ~~~~~g~~~~~i~~~f~-~a~~--------~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~ 272 (389)
T PRK03992 202 VQKFIGEGARLVRELFE-LARE--------KAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVK 272 (389)
T ss_pred hHhhccchHHHHHHHHH-HHHh--------cCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEE
Confidence 1 1112222221 1111 136799999999983 234455666654422 3567
Q ss_pred EEEEeeccccCchhhhc--cc-eEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Q 017884 174 FALICNQVNKIIPALQS--RC-TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNG 234 (364)
Q Consensus 174 ~Il~~~~~~~l~~~l~s--r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g 234 (364)
+|++||.++.+++++.+ |+ ..+.|++|+.++..++++..+....+. .+..+..++..+.|
T Consensus 273 VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~-~~~~~~~la~~t~g 335 (389)
T PRK03992 273 IIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLA-DDVDLEELAELTEG 335 (389)
T ss_pred EEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCC-CcCCHHHHHHHcCC
Confidence 88889999999999886 66 679999999999999999887654432 12346677777654
No 124
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.68 E-value=2.3e-15 Score=131.80 Aligned_cols=119 Identities=18% Similarity=0.240 Sum_probs=100.9
Q ss_pred eEEEEEeCCCCCCHHHHHHHHHHHHHhccCccEEEEee------------ccccCchhhhccceEEEecCCChHHHHHHH
Q 017884 142 VKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICN------------QVNKIIPALQSRCTRFRFAPLEPVHVTERL 209 (364)
Q Consensus 142 ~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~------------~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l 209 (364)
++|+||||+|.|.-++...|.+.||..- .+.+|++|| .|+-++..+..|..++.-.|++.++++.+|
T Consensus 292 pGVLFIDEvHmLDIE~FsFlnrAlEse~-aPIii~AtNRG~~kiRGTd~~sPhGIP~DlLDRllII~t~py~~~EireIi 370 (450)
T COG1224 292 PGVLFIDEVHMLDIECFSFLNRALESEL-APIIILATNRGMTKIRGTDIESPHGIPLDLLDRLLIISTRPYSREEIREII 370 (450)
T ss_pred cceEEEechhhhhHHHHHHHHHHhhccc-CcEEEEEcCCceeeecccCCcCCCCCCHhhhhheeEEecCCCCHHHHHHHH
Confidence 6799999999999999999999999743 455777775 567888999999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHc-CCCHHHHHHHHHHHHH----h-cccCchHHHHHh
Q 017884 210 KHVIEAEGLDVTEGGLAALVRLC-NGDMRKALNILQSTHM----A-SQQITEEAVYLC 261 (364)
Q Consensus 210 ~~~~~~~~~~i~~~~~~~l~~~~-~g~~r~a~~~l~~~~~----~-~~~i~~~~v~~~ 261 (364)
+.+++.+++.++++++++|+... ..++|.++++|.-... . ...+..++|+.+
T Consensus 371 ~iRa~ee~i~l~~~Ale~L~~ig~etSLRYa~qLL~pa~iiA~~rg~~~V~~~dVe~a 428 (450)
T COG1224 371 RIRAKEEDIELSDDALEYLTDIGEETSLRYAVQLLTPASIIAKRRGSKRVEVEDVERA 428 (450)
T ss_pred HHhhhhhccccCHHHHHHHHhhchhhhHHHHHHhccHHHHHHHHhCCCeeehhHHHHH
Confidence 99999999999999999999986 5789999999963322 1 247777887654
No 125
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=99.68 E-value=1.1e-15 Score=135.99 Aligned_cols=104 Identities=19% Similarity=0.279 Sum_probs=81.3
Q ss_pred eEEEEEeCCCCCCHHHHHHHHHHHHHhccCccEEEEee------------ccccCchhhhccceEEEecCCChHHHHHHH
Q 017884 142 VKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICN------------QVNKIIPALQSRCTRFRFAPLEPVHVTERL 209 (364)
Q Consensus 142 ~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~------------~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l 209 (364)
++|++|||+|.|.-++...|.+.+|..- .+.+|++|| .++-++..+.+||.++...|++.+++++++
T Consensus 279 pGVLFIDEvHmLDiEcFsfLnralEs~~-sPiiIlATNRg~~~irGt~~~sphGiP~DlLDRllII~t~py~~~ei~~Il 357 (398)
T PF06068_consen 279 PGVLFIDEVHMLDIECFSFLNRALESEL-SPIIILATNRGITKIRGTDIISPHGIPLDLLDRLLIIRTKPYSEEEIKQIL 357 (398)
T ss_dssp E-EEEEESGGGSBHHHHHHHHHHHTSTT---EEEEEES-SEEE-BTTS-EEETT--HHHHTTEEEEEE----HHHHHHHH
T ss_pred cceEEecchhhccHHHHHHHHHHhcCCC-CcEEEEecCceeeeccCccCcCCCCCCcchHhhcEEEECCCCCHHHHHHHH
Confidence 7799999999999999999999998643 456778886 456788899999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHc-CCCHHHHHHHHHHH
Q 017884 210 KHVIEAEGLDVTEGGLAALVRLC-NGDMRKALNILQST 246 (364)
Q Consensus 210 ~~~~~~~~~~i~~~~~~~l~~~~-~g~~r~a~~~l~~~ 246 (364)
.-+|+.+++.+++++++.|.... ..++|.|++++.-+
T Consensus 358 ~iR~~~E~v~i~~~al~~L~~ig~~~SLRYAiqLi~~a 395 (398)
T PF06068_consen 358 KIRAKEEDVEISEDALDLLTKIGVETSLRYAIQLITPA 395 (398)
T ss_dssp HHHHHHCT--B-HHHHHHHHHHHHHS-HHHHHHCHHHH
T ss_pred HhhhhhhcCcCCHHHHHHHHHHhhhccHHHHHHhhhhh
Confidence 99999999999999999999876 57899999988654
No 126
>CHL00176 ftsH cell division protein; Validated
Probab=99.67 E-value=3.8e-15 Score=145.54 Aligned_cols=199 Identities=21% Similarity=0.258 Sum_probs=133.9
Q ss_pred CCCcchhccHHHHHHHHHHHhc-----------CC-CCcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCCC-
Q 017884 50 QSLADVAAHRDIVDTIDRLTSE-----------NR-LPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDR- 116 (364)
Q Consensus 50 ~~~~~~vg~~~~~~~l~~~~~~-----------~~-~~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~- 116 (364)
.+|++++|.++.+..+...+.. .. ..+++|+||||+|||++|++++.+. ...++.++++...
T Consensus 180 ~~f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~-----~~p~i~is~s~f~~ 254 (638)
T CHL00176 180 ITFRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA-----EVPFFSISGSEFVE 254 (638)
T ss_pred CCHHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHh-----CCCeeeccHHHHHH
Confidence 5899999999988887776531 11 2349999999999999999999986 3445555544321
Q ss_pred -----ChHHHHHHHHHHHhcCccccCCccceEEEEEeCCCCCCH-----------HH---HHHHHHHHHHhc--cCccEE
Q 017884 117 -----GIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTK-----------DA---QFALRRVIEKYT--KNTRFA 175 (364)
Q Consensus 117 -----~~~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~~-----------~~---~~~L~~~le~~~--~~~~~I 175 (364)
+...++..+..... ..+.||+|||+|.+.. .. .+.|+..++... .++.+|
T Consensus 255 ~~~g~~~~~vr~lF~~A~~---------~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVI 325 (638)
T CHL00176 255 MFVGVGAARVRDLFKKAKE---------NSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVI 325 (638)
T ss_pred HhhhhhHHHHHHHHHHHhc---------CCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEE
Confidence 11222333332221 1467999999998842 22 334444444433 345677
Q ss_pred EEeeccccCchhhhc--cc-eEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHH---
Q 017884 176 LICNQVNKIIPALQS--RC-TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNG-DMRKALNILQSTHM--- 248 (364)
Q Consensus 176 l~~~~~~~l~~~l~s--r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g-~~r~a~~~l~~~~~--- 248 (364)
.+||.++.+++++.+ |+ ..+.|++|+.++..++++..++.... .++..+..+++.+.| +.+.+.+++..++.
T Consensus 326 aaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~-~~d~~l~~lA~~t~G~sgaDL~~lvneAal~a~ 404 (638)
T CHL00176 326 AATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKL-SPDVSLELIARRTPGFSGADLANLLNEAAILTA 404 (638)
T ss_pred EecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhccc-chhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence 788888889999987 44 77999999999999999998876432 345567889988876 55555555543332
Q ss_pred --hcccCchHHHHHhcC
Q 017884 249 --ASQQITEEAVYLCTG 263 (364)
Q Consensus 249 --~~~~i~~~~v~~~~~ 263 (364)
....|+.+++..++.
T Consensus 405 r~~~~~It~~dl~~Ai~ 421 (638)
T CHL00176 405 RRKKATITMKEIDTAID 421 (638)
T ss_pred HhCCCCcCHHHHHHHHH
Confidence 124688888877653
No 127
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.67 E-value=7.2e-15 Score=136.38 Aligned_cols=200 Identities=21% Similarity=0.268 Sum_probs=127.7
Q ss_pred cCCCCCcchhccHHHHHHHHHHHhc-----------C--CCCcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCC
Q 017884 47 YRPQSLADVAAHRDIVDTIDRLTSE-----------N--RLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNAS 113 (364)
Q Consensus 47 ~~p~~~~~~vg~~~~~~~l~~~~~~-----------~--~~~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~ 113 (364)
....+|+++.|.+..++.++..+.. | .+.+++||||||||||++++++++.+ ...++.+.++
T Consensus 139 ~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l-----~~~fi~i~~s 213 (398)
T PTZ00454 139 KPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHT-----TATFIRVVGS 213 (398)
T ss_pred CCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhc-----CCCEEEEehH
Confidence 3345899999999999988887641 1 12339999999999999999999986 3344555432
Q ss_pred CC------CChHHHHHHHHHHHhcCccccCCccceEEEEEeCCCCCCH-----------HHHHHHHHHH---HHh--ccC
Q 017884 114 DD------RGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTK-----------DAQFALRRVI---EKY--TKN 171 (364)
Q Consensus 114 ~~------~~~~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~~-----------~~~~~L~~~l---e~~--~~~ 171 (364)
.. .+...+++.+.. +. ...+.||+|||+|.+.. ..+..+..++ +.. ..+
T Consensus 214 ~l~~k~~ge~~~~lr~lf~~-A~--------~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~ 284 (398)
T PTZ00454 214 EFVQKYLGEGPRMVRDVFRL-AR--------ENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTN 284 (398)
T ss_pred HHHHHhcchhHHHHHHHHHH-HH--------hcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCC
Confidence 21 111122222221 11 11478999999998742 2233444444 332 235
Q ss_pred ccEEEEeeccccCchhhhc--cc-eEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHH
Q 017884 172 TRFALICNQVNKIIPALQS--RC-TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNG-DMRKALNILQSTH 247 (364)
Q Consensus 172 ~~~Il~~~~~~~l~~~l~s--r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g-~~r~a~~~l~~~~ 247 (364)
+.+|++||.++.+++++.+ |+ ..++|++|+.++...+++..+.+.++.- +-.+..++..+.| +...+.+++..+.
T Consensus 285 v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~-dvd~~~la~~t~g~sgaDI~~l~~eA~ 363 (398)
T PTZ00454 285 VKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSE-EVDLEDFVSRPEKISAADIAAICQEAG 363 (398)
T ss_pred EEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCc-ccCHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 6788899999999999876 65 6699999999999999998877655432 2346677777644 4444444444433
Q ss_pred Hhc-----ccCchHHHHHh
Q 017884 248 MAS-----QQITEEAVYLC 261 (364)
Q Consensus 248 ~~~-----~~i~~~~v~~~ 261 (364)
..+ ..|+.+++.++
T Consensus 364 ~~A~r~~~~~i~~~df~~A 382 (398)
T PTZ00454 364 MQAVRKNRYVILPKDFEKG 382 (398)
T ss_pred HHHHHcCCCccCHHHHHHH
Confidence 221 24555555443
No 128
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.63 E-value=3.7e-15 Score=150.55 Aligned_cols=179 Identities=22% Similarity=0.286 Sum_probs=121.5
Q ss_pred chhccHHHHHHHHHHHhc------CCCCcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCCCChHHHH-----
Q 017884 54 DVAAHRDIVDTIDRLTSE------NRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVR----- 122 (364)
Q Consensus 54 ~~vg~~~~~~~l~~~~~~------~~~~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~----- 122 (364)
++.|++++++.+..++.. ...++++|+||||+|||++|+++++.+. ..+..++.........+.
T Consensus 321 ~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~-----~~~~~i~~~~~~~~~~i~g~~~~ 395 (775)
T TIGR00763 321 DHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALN-----RKFVRFSLGGVRDEAEIRGHRRT 395 (775)
T ss_pred hcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhc-----CCeEEEeCCCcccHHHHcCCCCc
Confidence 478999999988876542 2345699999999999999999999983 334444433211111110
Q ss_pred ------HHHH-HHHhcCccccCCccceEEEEEeCCCCCCHHH----HHHHHHHHHHh---------------ccCccEEE
Q 017884 123 ------QQIQ-DFASTQSFSFGVKASVKLVLLDEADAMTKDA----QFALRRVIEKY---------------TKNTRFAL 176 (364)
Q Consensus 123 ------~~i~-~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~----~~~L~~~le~~---------------~~~~~~Il 176 (364)
..+. .+... .. ...||+|||+|.+.... .++|+.+|+.. .+++.||+
T Consensus 396 ~~g~~~g~i~~~l~~~-----~~--~~~villDEidk~~~~~~~~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~I~ 468 (775)
T TIGR00763 396 YVGAMPGRIIQGLKKA-----KT--KNPLFLLDEIDKIGSSFRGDPASALLEVLDPEQNNAFSDHYLDVPFDLSKVIFIA 468 (775)
T ss_pred eeCCCCchHHHHHHHh-----Cc--CCCEEEEechhhcCCccCCCHHHHHHHhcCHHhcCccccccCCceeccCCEEEEE
Confidence 0111 11111 00 23499999999997532 47788888741 13567788
Q ss_pred EeeccccCchhhhccceEEEecCCChHHHHHHHHHHH-----HHc-----CCCCCHHHHHHHHHHcC--CCHHHHHHHHH
Q 017884 177 ICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVI-----EAE-----GLDVTEGGLAALVRLCN--GDMRKALNILQ 244 (364)
Q Consensus 177 ~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~-----~~~-----~~~i~~~~~~~l~~~~~--g~~r~a~~~l~ 244 (364)
++|..+.+++++++||.++.|++++.++...+++..+ ... ++.++++++..|++... ...|.+...++
T Consensus 469 TtN~~~~i~~~L~~R~~vi~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~~e~g~R~l~r~i~ 548 (775)
T TIGR00763 469 TANSIDTIPRPLLDRMEVIELSGYTEEEKLEIAKKYLIPKALEDHGLKPDELKITDEALLLLIKYYTREAGVRNLERQIE 548 (775)
T ss_pred ecCCchhCCHHHhCCeeEEecCCCCHHHHHHHHHHHHHHHHHHHcCCCcceEEECHHHHHHHHHhcChhcCChHHHHHHH
Confidence 8899999999999999999999999999888887654 222 45789999999997542 34455444443
No 129
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.62 E-value=1.8e-14 Score=133.88 Aligned_cols=205 Identities=20% Similarity=0.244 Sum_probs=127.6
Q ss_pred ccCCCCCcchhccHHHHHHHHHHHhcC-------------CCCcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeC
Q 017884 46 KYRPQSLADVAAHRDIVDTIDRLTSEN-------------RLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNA 112 (364)
Q Consensus 46 ~~~p~~~~~~vg~~~~~~~l~~~~~~~-------------~~~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~ 112 (364)
.....+|+++.|.++.++.+...+... .+.+++||||||+|||++|+++++.+. ..++.+.+
T Consensus 115 ~~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~-----~~~~~v~~ 189 (364)
T TIGR01242 115 ERPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETN-----ATFIRVVG 189 (364)
T ss_pred cCCCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCC-----CCEEecch
Confidence 344558899999999999998876421 123499999999999999999999873 33444432
Q ss_pred CCCCC--hHHHHHHHHHHHhcCccccCCccceEEEEEeCCCCCC-----------HHHHHHHHHHHHHh-----ccCccE
Q 017884 113 SDDRG--IDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMT-----------KDAQFALRRVIEKY-----TKNTRF 174 (364)
Q Consensus 113 ~~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~-----------~~~~~~L~~~le~~-----~~~~~~ 174 (364)
..... .......+...... .....+.+|+|||+|.+. ...+..+..++... ..++.+
T Consensus 190 ~~l~~~~~g~~~~~i~~~f~~-----a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~v 264 (364)
T TIGR01242 190 SELVRKYIGEGARLVREIFEL-----AKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKV 264 (364)
T ss_pred HHHHHHhhhHHHHHHHHHHHH-----HHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEE
Confidence 21100 00101111111111 011136799999999884 22345555555442 246778
Q ss_pred EEEeeccccCchhhhc--cc-eEEEecCCChHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHcCC----CHHHHHHHHHHH
Q 017884 175 ALICNQVNKIIPALQS--RC-TRFRFAPLEPVHVTERLKHVIEAEGLDVTE-GGLAALVRLCNG----DMRKALNILQST 246 (364)
Q Consensus 175 Il~~~~~~~l~~~l~s--r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~-~~~~~l~~~~~g----~~r~a~~~l~~~ 246 (364)
|++||.++.+++++.+ |+ ..+.|++|+.++..++++..+.... +++ ..+..+++.+.| |++.+....-..
T Consensus 265 I~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~--l~~~~~~~~la~~t~g~sg~dl~~l~~~A~~~ 342 (364)
T TIGR01242 265 IAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMK--LAEDVDLEAIAKMTEGASGADLKAICTEAGMF 342 (364)
T ss_pred EEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCC--CCccCCHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 8889999999999876 55 6799999999999999988775443 322 246777777754 343333332222
Q ss_pred HH--hcccCchHHHHHhc
Q 017884 247 HM--ASQQITEEAVYLCT 262 (364)
Q Consensus 247 ~~--~~~~i~~~~v~~~~ 262 (364)
+. ....|+.+++..++
T Consensus 343 a~~~~~~~i~~~d~~~a~ 360 (364)
T TIGR01242 343 AIREERDYVTMDDFIKAV 360 (364)
T ss_pred HHHhCCCccCHHHHHHHH
Confidence 21 12356766665544
No 130
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.61 E-value=8.5e-15 Score=138.63 Aligned_cols=175 Identities=19% Similarity=0.242 Sum_probs=116.3
Q ss_pred CChhhccCCCCCcchhccHHHHHHHHHHHhc-----------C--CCCcEEEeCCCCccHHHHHHHHHHHHcCCC-----
Q 017884 41 SPWVEKYRPQSLADVAAHRDIVDTIDRLTSE-----------N--RLPHLLLYGPPGTGKTSTILAVARKLYGAQ----- 102 (364)
Q Consensus 41 ~~~~~~~~p~~~~~~vg~~~~~~~l~~~~~~-----------~--~~~~lll~G~~G~GKt~la~~l~~~l~~~~----- 102 (364)
....+++.+.+|+++.|.+..++.++..+.. + ...+++||||||||||++++++++.+....
T Consensus 170 ~l~~~~~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~ 249 (512)
T TIGR03689 170 DLVLEEVPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETG 249 (512)
T ss_pred cceeecCCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccC
Confidence 3345667778999999999999988887641 1 223399999999999999999999985431
Q ss_pred CCCcEEEEeCCCCC------ChHHHHHHHHHHHhcCccccCCccceEEEEEeCCCCCCHH------------HHHHHHHH
Q 017884 103 YHNMILELNASDDR------GIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKD------------AQFALRRV 164 (364)
Q Consensus 103 ~~~~~~~~~~~~~~------~~~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~------------~~~~L~~~ 164 (364)
....++.+..+... ....++..+...... ...+.+.||+|||+|.+... ..+.|+..
T Consensus 250 ~~~~fl~v~~~eLl~kyvGete~~ir~iF~~Ar~~-----a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~ 324 (512)
T TIGR03689 250 DKSYFLNIKGPELLNKYVGETERQIRLIFQRAREK-----ASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSE 324 (512)
T ss_pred CceeEEeccchhhcccccchHHHHHHHHHHHHHHH-----hhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHH
Confidence 12223333322210 111222222221111 11114779999999988421 13466666
Q ss_pred HHHhc--cCccEEEEeeccccCchhhhc--cc-eEEEecCCChHHHHHHHHHHHHHcCCCCC
Q 017884 165 IEKYT--KNTRFALICNQVNKIIPALQS--RC-TRFRFAPLEPVHVTERLKHVIEAEGLDVT 221 (364)
Q Consensus 165 le~~~--~~~~~Il~~~~~~~l~~~l~s--r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~i~ 221 (364)
|+... .++.+|.+||.++.+++++.+ |+ ..++|++|+.++..+++..++.. .+.++
T Consensus 325 LDgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~-~l~l~ 385 (512)
T TIGR03689 325 LDGVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTD-SLPLD 385 (512)
T ss_pred hcccccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhc-cCCch
Confidence 66543 456678888999999999988 76 56999999999999999988754 33443
No 131
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.61 E-value=1.1e-14 Score=148.30 Aligned_cols=203 Identities=16% Similarity=0.216 Sum_probs=145.1
Q ss_pred CCChhhccCCCCCcchhccHHHHHHHHHHHhcCCCCcEEEeCCCCccHHHHHHHHHHHHcCCC-----CCCcEEEEeCCC
Q 017884 40 ASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ-----YHNMILELNASD 114 (364)
Q Consensus 40 ~~~~~~~~~p~~~~~~vg~~~~~~~l~~~~~~~~~~~lll~G~~G~GKt~la~~l~~~l~~~~-----~~~~~~~~~~~~ 114 (364)
..++.++.||..++.++|+++.+..+...+.....++.+|+||||+|||++++.++..+.... ....++.++...
T Consensus 160 ~~~l~~~~~~~~~~~~igr~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~ 239 (852)
T TIGR03346 160 ARDLTERAREGKLDPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGA 239 (852)
T ss_pred hhhHHHHhhCCCCCcCCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHHH
Confidence 357889999999999999999999999998888878899999999999999999999874321 123344443221
Q ss_pred C----CChHHHHHHHHHHHhcCccccCCccceEEEEEeCCCCCCH--------HHHHHHHHHHHHhccCccEEEEeecc-
Q 017884 115 D----RGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTK--------DAQFALRRVIEKYTKNTRFALICNQV- 181 (364)
Q Consensus 115 ~----~~~~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~~--------~~~~~L~~~le~~~~~~~~Il~~~~~- 181 (364)
. .........+........ ...++.|+||||+|.+.. +..+.|...+.. ....+|.+|+..
T Consensus 240 l~a~~~~~g~~e~~l~~~l~~~~----~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~--g~i~~IgaTt~~e 313 (852)
T TIGR03346 240 LIAGAKYRGEFEERLKAVLNEVT----KSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALAR--GELHCIGATTLDE 313 (852)
T ss_pred HhhcchhhhhHHHHHHHHHHHHH----hcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhhc--CceEEEEeCcHHH
Confidence 1 011122223333222110 001367999999999862 244556655542 356677777544
Q ss_pred ----ccCchhhhccceEEEecCCChHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCC---C---HHHHHHHHHHHH
Q 017884 182 ----NKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEA----EGLDVTEGGLAALVRLCNG---D---MRKALNILQSTH 247 (364)
Q Consensus 182 ----~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~----~~~~i~~~~~~~l~~~~~g---~---~r~a~~~l~~~~ 247 (364)
...++++.+||+.+.++.|+.++...++.....+ .++.++++++..++..+.+ + |.+|+++++.++
T Consensus 314 ~r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls~~yi~~r~lPdkAidlld~a~ 393 (852)
T TIGR03346 314 YRKYIEKDAALERRFQPVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHRYITDRFLPDKAIDLIDEAA 393 (852)
T ss_pred HHHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHhccccccccCCchHHHHHHHHHH
Confidence 2468999999999999999999999998877654 3677899999999988753 3 889999998766
Q ss_pred H
Q 017884 248 M 248 (364)
Q Consensus 248 ~ 248 (364)
.
T Consensus 394 a 394 (852)
T TIGR03346 394 A 394 (852)
T ss_pred H
Confidence 4
No 132
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=3.1e-14 Score=130.60 Aligned_cols=196 Identities=21% Similarity=0.235 Sum_probs=131.0
Q ss_pred CCCCcchhccHHHHHHHHHHHh-----------cCCCCc-EEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCCC
Q 017884 49 PQSLADVAAHRDIVDTIDRLTS-----------ENRLPH-LLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDR 116 (364)
Q Consensus 49 p~~~~~~vg~~~~~~~l~~~~~-----------~~~~~~-lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~ 116 (364)
-.+|+++.|-++.+..|.+.+. +|+.|. +||+||||+|||.+|+++|.+. ...|++..++...
T Consensus 300 nv~F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA-----~VPFF~~sGSEFd 374 (752)
T KOG0734|consen 300 NVTFEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEA-----GVPFFYASGSEFD 374 (752)
T ss_pred ccccccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhccc-----CCCeEeccccchh
Confidence 3579999999999998877764 456666 9999999999999999999985 4556666655532
Q ss_pred ------ChHHHHHHHHHHHhcCccccCCccceEEEEEeCCCCCCH-----------HHHHHHHHHHHHhccC--ccEEEE
Q 017884 117 ------GIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTK-----------DAQFALRRVIEKYTKN--TRFALI 177 (364)
Q Consensus 117 ------~~~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~~-----------~~~~~L~~~le~~~~~--~~~Il~ 177 (364)
+...+++.+...... .++||+|||+|.+.. ...+.|+--|+.+..+ ..+|.+
T Consensus 375 Em~VGvGArRVRdLF~aAk~~---------APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeGiIvigA 445 (752)
T KOG0734|consen 375 EMFVGVGARRVRDLFAAAKAR---------APCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEGIIVIGA 445 (752)
T ss_pred hhhhcccHHHHHHHHHHHHhc---------CCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCCceEEEec
Confidence 333455544443322 378999999999852 2345666666665544 445556
Q ss_pred eeccccCchhhhc--cc-eEEEecCCChHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC----CHHHHHHHHHHHH--
Q 017884 178 CNQVNKIIPALQS--RC-TRFRFAPLEPVHVTERLKHVIEAEGLDVTEG-GLAALVRLCNG----DMRKALNILQSTH-- 247 (364)
Q Consensus 178 ~~~~~~l~~~l~s--r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~-~~~~l~~~~~g----~~r~a~~~l~~~~-- 247 (364)
||.++.++++|.+ |+ ..+..+.|+..-..+++..+..+- .++++ ....|++-+.| |+..++|....-+
T Consensus 446 TNfpe~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki--~~~~~VD~~iiARGT~GFsGAdLaNlVNqAAlkAa~ 523 (752)
T KOG0734|consen 446 TNFPEALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKI--PLDEDVDPKIIARGTPGFSGADLANLVNQAALKAAV 523 (752)
T ss_pred cCChhhhhHHhcCCCccceeEecCCCCcccHHHHHHHHHhcC--CcccCCCHhHhccCCCCCchHHHHHHHHHHHHHHHh
Confidence 7999999999987 56 668899999988999998887743 33322 23445655543 4444444332111
Q ss_pred HhcccCchHHHHH
Q 017884 248 MASQQITEEAVYL 260 (364)
Q Consensus 248 ~~~~~i~~~~v~~ 260 (364)
..+..+|+.+++.
T Consensus 524 dga~~VtM~~LE~ 536 (752)
T KOG0734|consen 524 DGAEMVTMKHLEF 536 (752)
T ss_pred cCcccccHHHHhh
Confidence 1223566666543
No 133
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.59 E-value=4.1e-14 Score=142.68 Aligned_cols=173 Identities=20% Similarity=0.261 Sum_probs=121.3
Q ss_pred CCCCcchhccHHHHHHHHHHHhc------------CCCCc-EEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCC
Q 017884 49 PQSLADVAAHRDIVDTIDRLTSE------------NRLPH-LLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDD 115 (364)
Q Consensus 49 p~~~~~~vg~~~~~~~l~~~~~~------------~~~~~-lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~ 115 (364)
..+|+++.|.+.+++.|...+.- ...|. ++||||||||||++|+++++++ ...++.+.++..
T Consensus 449 ~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~-----~~~fi~v~~~~l 523 (733)
T TIGR01243 449 NVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATES-----GANFIAVRGPEI 523 (733)
T ss_pred ccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhc-----CCCEEEEehHHH
Confidence 35899999999999998887641 12233 8999999999999999999996 455666665431
Q ss_pred C------ChHHHHHHHHHHHhcCccccCCccceEEEEEeCCCCCCH------------HHHHHHHHHHHH--hccCccEE
Q 017884 116 R------GIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTK------------DAQFALRRVIEK--YTKNTRFA 175 (364)
Q Consensus 116 ~------~~~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~~------------~~~~~L~~~le~--~~~~~~~I 175 (364)
. ....++..+...... .+.||+|||+|.+.. ...+.|+..|+. ...++.+|
T Consensus 524 ~~~~vGese~~i~~~f~~A~~~---------~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~vI 594 (733)
T TIGR01243 524 LSKWVGESEKAIREIFRKARQA---------APAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVVVI 594 (733)
T ss_pred hhcccCcHHHHHHHHHHHHHhc---------CCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEEEE
Confidence 1 112233332222211 468999999998842 234556777764 33466778
Q ss_pred EEeeccccCchhhhc--cc-eEEEecCCChHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHcCCCHH
Q 017884 176 LICNQVNKIIPALQS--RC-TRFRFAPLEPVHVTERLKHVIEAEGLDVTE-GGLAALVRLCNGDMR 237 (364)
Q Consensus 176 l~~~~~~~l~~~l~s--r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~-~~~~~l~~~~~g~~r 237 (364)
.+||.++.+++++.+ || ..+.+++|+.++..++++...++. .+++ ..++.|++.+.|--.
T Consensus 595 ~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~--~~~~~~~l~~la~~t~g~sg 658 (733)
T TIGR01243 595 AATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSM--PLAEDVDLEELAEMTEGYTG 658 (733)
T ss_pred EeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCC--CCCccCCHHHHHHHcCCCCH
Confidence 888999999999986 88 779999999999999988665543 3333 347888888765433
No 134
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.58 E-value=1.2e-13 Score=137.49 Aligned_cols=194 Identities=13% Similarity=0.165 Sum_probs=132.7
Q ss_pred CCCCCcchhccHHHHHHHHHHHhcCCCCcEEEeCCCCccHHHHHHHHHHHHcCCCC-----CCcEEEEeCCCC----CCh
Q 017884 48 RPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQY-----HNMILELNASDD----RGI 118 (364)
Q Consensus 48 ~p~~~~~~vg~~~~~~~l~~~~~~~~~~~lll~G~~G~GKt~la~~l~~~l~~~~~-----~~~~~~~~~~~~----~~~ 118 (364)
+-..++.++|++..+..+...+.....++++|+||||+|||++++.++..+..... ...++.++.... ...
T Consensus 181 ~~g~~~~liGR~~ei~~~i~iL~r~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~~~llaG~~~~ 260 (758)
T PRK11034 181 RVGGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYR 260 (758)
T ss_pred HcCCCCcCcCCCHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccHHHHhcccchh
Confidence 45678999999999999999888877788999999999999999999988643321 122222221110 011
Q ss_pred HHHHHHHHHHHhcCccccCCccceEEEEEeCCCCCCH---------HHHHHHHHHHHHhccCccEEEEeeccc-----cC
Q 017884 119 DVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTK---------DAQFALRRVIEKYTKNTRFALICNQVN-----KI 184 (364)
Q Consensus 119 ~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~~---------~~~~~L~~~le~~~~~~~~Il~~~~~~-----~l 184 (364)
......+........ ..++.+++|||+|.+.. +..+.|..++.. ....+|.+|+... ..
T Consensus 261 Ge~e~rl~~l~~~l~-----~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~--g~i~vIgATt~~E~~~~~~~ 333 (758)
T PRK11034 261 GDFEKRFKALLKQLE-----QDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS--GKIRVIGSTTYQEFSNIFEK 333 (758)
T ss_pred hhHHHHHHHHHHHHH-----hcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhC--CCeEEEecCChHHHHHHhhc
Confidence 122222332221110 01356999999998831 223334445442 3455666665432 46
Q ss_pred chhhhccceEEEecCCChHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcC------CCHHHHHHHHHHHHH
Q 017884 185 IPALQSRCTRFRFAPLEPVHVTERLKHVIEA----EGLDVTEGGLAALVRLCN------GDMRKALNILQSTHM 248 (364)
Q Consensus 185 ~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~----~~~~i~~~~~~~l~~~~~------g~~r~a~~~l~~~~~ 248 (364)
++++.+||+.+.+++|+.++...+|+....+ .++.++++++..++..+. .-|.+|+++++.++.
T Consensus 334 D~AL~rRFq~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~al~~a~~ls~ryi~~r~lPdKaidlldea~a 407 (758)
T PRK11034 334 DRALARRFQKIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVIDEAGA 407 (758)
T ss_pred cHHHHhhCcEEEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHHHHHHHHHHhhccccCccChHHHHHHHHHHHH
Confidence 8899999999999999999999999876543 478899999998887764 247799999987764
No 135
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=1.2e-13 Score=128.86 Aligned_cols=181 Identities=18% Similarity=0.223 Sum_probs=127.9
Q ss_pred CCCcchhccHHHHHHHHHHHhcC------------CCCc-EEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCC-
Q 017884 50 QSLADVAAHRDIVDTIDRLTSEN------------RLPH-LLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDD- 115 (364)
Q Consensus 50 ~~~~~~vg~~~~~~~l~~~~~~~------------~~~~-lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~- 115 (364)
.+|+++-+.+++..+|...+... ..|. +|+|||||||||.+|+++|++- ..+|+.+-+...
T Consensus 508 VtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEa-----g~NFisVKGPELl 582 (802)
T KOG0733|consen 508 VTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEA-----GANFISVKGPELL 582 (802)
T ss_pred CChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhc-----cCceEeecCHHHH
Confidence 48999999999999988776421 2333 9999999999999999999995 677777755432
Q ss_pred -----CChHHHHHHHHHHHhcCccccCCccceEEEEEeCCCCCCH-----------HHHHHHHHHHHHhc--cCccEEEE
Q 017884 116 -----RGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTK-----------DAQFALRRVIEKYT--KNTRFALI 177 (364)
Q Consensus 116 -----~~~~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~~-----------~~~~~L~~~le~~~--~~~~~Il~ 177 (364)
.+...+++.+...... .++|||+||+|.|.+ ...+.|+.-|+... ..+.+|.+
T Consensus 583 NkYVGESErAVR~vFqRAR~s---------aPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaA 653 (802)
T KOG0733|consen 583 NKYVGESERAVRQVFQRARAS---------APCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAA 653 (802)
T ss_pred HHHhhhHHHHHHHHHHHhhcC---------CCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEee
Confidence 1223444444333222 378999999999963 34667777777553 34567778
Q ss_pred eeccccCchhhhcc--c-eEEEecCCChHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHc------CCCHHHHHHHHH
Q 017884 178 CNQVNKIIPALQSR--C-TRFRFAPLEPVHVTERLKHVIEAEGLDVTEG-GLAALVRLC------NGDMRKALNILQ 244 (364)
Q Consensus 178 ~~~~~~l~~~l~sr--~-~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~-~~~~l~~~~------~g~~r~a~~~l~ 244 (364)
||.++.+++++.+- + ..+....|+.++..++|+...+..+..++++ .++.|+... |.|+..++....
T Consensus 654 TNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~~~c~gftGADLaaLvreAs 730 (802)
T KOG0733|consen 654 TNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARNTKCEGFTGADLAALVREAS 730 (802)
T ss_pred cCCCcccchhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhcccccCCchhhHHHHHHHHH
Confidence 89999999999884 4 5678888889999999999888555555444 356666543 445555555443
No 136
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.58 E-value=2.5e-13 Score=121.27 Aligned_cols=216 Identities=20% Similarity=0.258 Sum_probs=133.9
Q ss_pred CChhhccCCCCCcchhccHHHHHHHHHHHhcCCCCcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCCCChH-
Q 017884 41 SPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGID- 119 (364)
Q Consensus 41 ~~~~~~~~p~~~~~~vg~~~~~~~l~~~~~~~~~~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~- 119 (364)
.|+.....|..|-.-.++..+...+...+..+ .+.++|+||+|+|||++++.+++.+.+... ....+........+
T Consensus 11 ~pF~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~--~~~~~~~~~~~~~~~ 87 (269)
T TIGR03015 11 KPFQLLPDPDFFYPSKGHKRAMAYLEYGLSQR-EGFILITGEVGAGKTTLIRNLLKRLDQERV--VAAKLVNTRVDAEDL 87 (269)
T ss_pred CCCCCCCCHHHhCCCHHHHHHHHHHHHHHhcC-CCEEEEEcCCCCCHHHHHHHHHHhcCCCCe--EEeeeeCCCCCHHHH
Confidence 45555555554444445556666666665543 234899999999999999999998753221 11111111100000
Q ss_pred ------------------HHHHHHHHHHhcCccccCCccceEEEEEeCCCCCCHHHHHHHHHHHHHhc---cCccEEEEe
Q 017884 120 ------------------VVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYT---KNTRFALIC 178 (364)
Q Consensus 120 ------------------~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~---~~~~~Il~~ 178 (364)
.....+..+.... ...+...+++|||++.+.....+.|..+.+... ..+.+++++
T Consensus 88 l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~----~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g 163 (269)
T TIGR03015 88 LRMVAADFGLETEGRDKAALLRELEDFLIEQ----FAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVG 163 (269)
T ss_pred HHHHHHHcCCCCCCCCHHHHHHHHHHHHHHH----HhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcC
Confidence 1111111111110 001246799999999999887777665443221 122345555
Q ss_pred ecc------ccCchhhhccc-eEEEecCCChHHHHHHHHHHHHHcC----CCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 017884 179 NQV------NKIIPALQSRC-TRFRFAPLEPVHVTERLKHVIEAEG----LDVTEGGLAALVRLCNGDMRKALNILQSTH 247 (364)
Q Consensus 179 ~~~------~~l~~~l~sr~-~~i~~~~~~~~~~~~~l~~~~~~~~----~~i~~~~~~~l~~~~~g~~r~a~~~l~~~~ 247 (364)
... ......+.+|. ..+++++++.+++.+++...+...+ ..+++++++.|++.++|++|.+...+..+.
T Consensus 164 ~~~~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~~ 243 (269)
T TIGR03015 164 QPEFRETLQSPQLQQLRQRIIASCHLGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRLL 243 (269)
T ss_pred CHHHHHHHcCchhHHHHhheeeeeeCCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHHH
Confidence 321 01123566774 6789999999999999999988655 368999999999999999999777766554
Q ss_pred Hh-----cccCchHHHHHhcC
Q 017884 248 MA-----SQQITEEAVYLCTG 263 (364)
Q Consensus 248 ~~-----~~~i~~~~v~~~~~ 263 (364)
.. ...|+.++|..++.
T Consensus 244 ~~a~~~~~~~i~~~~v~~~~~ 264 (269)
T TIGR03015 244 LSAFLEEKREIGGEEVREVIA 264 (269)
T ss_pred HHHHHcCCCCCCHHHHHHHHH
Confidence 32 25788888877654
No 137
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.57 E-value=2.8e-13 Score=119.86 Aligned_cols=190 Identities=21% Similarity=0.205 Sum_probs=122.3
Q ss_pred HHHHHHHHHHHhcCCCCcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCCCChHHHHH---------HHHHHH
Q 017884 59 RDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQ---------QIQDFA 129 (364)
Q Consensus 59 ~~~~~~l~~~~~~~~~~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---------~i~~~~ 129 (364)
..+.+.+..++..+ .+++|+||||+|||++|+++++.+ +..++.+++........+.. ....+.
T Consensus 8 ~~l~~~~l~~l~~g--~~vLL~G~~GtGKT~lA~~la~~l-----g~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~ 80 (262)
T TIGR02640 8 KRVTSRALRYLKSG--YPVHLRGPAGTGKTTLAMHVARKR-----DRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFI 80 (262)
T ss_pred HHHHHHHHHHHhcC--CeEEEEcCCCCCHHHHHHHHHHHh-----CCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHH
Confidence 34555666666665 469999999999999999999876 33445555543222121110 011110
Q ss_pred h--------------cCccccCCccceEEEEEeCCCCCCHHHHHHHHHHHHHhc----------------cCccEEEEee
Q 017884 130 S--------------TQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYT----------------KNTRFALICN 179 (364)
Q Consensus 130 ~--------------~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~----------------~~~~~Il~~~ 179 (364)
. ..+. +.....+.+++|||++.+.++.++.|+.+|++.. ++.++|+++|
T Consensus 81 ~~~~~~~~~~~~~~~~g~l-~~A~~~g~~lllDEi~r~~~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN 159 (262)
T TIGR02640 81 HNVVKLEDIVRQNWVDNRL-TLAVREGFTLVYDEFTRSKPETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSN 159 (262)
T ss_pred HHhhhhhcccceeecCchH-HHHHHcCCEEEEcchhhCCHHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeC
Confidence 0 0000 0000135699999999999999999999998521 3556778877
Q ss_pred cc-----ccCchhhhccceEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC----------CCHHHHHHHHH
Q 017884 180 QV-----NKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCN----------GDMRKALNILQ 244 (364)
Q Consensus 180 ~~-----~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~----------g~~r~a~~~l~ 244 (364)
.. ..+.+.+.+||..+.+..|+.++..+++.... .++++.++.+++... -.+|.++...+
T Consensus 160 ~~~~~g~~~l~~aL~~R~~~i~i~~P~~~~e~~Il~~~~-----~~~~~~~~~iv~~~~~~R~~~~~~~~~~r~~i~~~~ 234 (262)
T TIGR02640 160 PVEYAGVHETQDALLDRLITIFMDYPDIDTETAILRAKT-----DVAEDSAATIVRLVREFRASGDEITSGLRASLMIAE 234 (262)
T ss_pred CccccceecccHHHHhhcEEEECCCCCHHHHHHHHHHhh-----CCCHHHHHHHHHHHHHHHhhCCccCCcHHHHHHHHH
Confidence 54 25678899999999999999999988888753 467777777765531 12777777776
Q ss_pred HHHHhc--ccCchHHHHHh
Q 017884 245 STHMAS--QQITEEAVYLC 261 (364)
Q Consensus 245 ~~~~~~--~~i~~~~v~~~ 261 (364)
.+.... ..++.+++.++
T Consensus 235 ~~~~~~~~~~~~~~~~~~~ 253 (262)
T TIGR02640 235 VATQQDIPVDVDDEDFVDL 253 (262)
T ss_pred HHHHcCCCCCCCcHHHHHH
Confidence 665543 23444444443
No 138
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.57 E-value=3.3e-14 Score=144.43 Aligned_cols=203 Identities=14% Similarity=0.178 Sum_probs=144.1
Q ss_pred CCChhhccCCCCCcchhccHHHHHHHHHHHhcCCCCcEEEeCCCCccHHHHHHHHHHHHcCCC-----CCCcEEEEeCCC
Q 017884 40 ASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ-----YHNMILELNASD 114 (364)
Q Consensus 40 ~~~~~~~~~p~~~~~~vg~~~~~~~l~~~~~~~~~~~lll~G~~G~GKt~la~~l~~~l~~~~-----~~~~~~~~~~~~ 114 (364)
..++.++.||..++.++|+++.+..+...+.....++++|+||||+|||++++.++..+.... ....++.++...
T Consensus 165 ~~~l~~~~r~~~l~~vigr~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~ 244 (857)
T PRK10865 165 TIDLTERAEQGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGA 244 (857)
T ss_pred hhhHHHHHhcCCCCcCCCCHHHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhh
Confidence 467888999999999999999999999988888888899999999999999999999974321 123444443322
Q ss_pred CC----ChHHHHHHHHHHHhcCccccCCccceEEEEEeCCCCCCHH--------HHHHHHHHHHHhccCccEEEEeeccc
Q 017884 115 DR----GIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKD--------AQFALRRVIEKYTKNTRFALICNQVN 182 (364)
Q Consensus 115 ~~----~~~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~--------~~~~L~~~le~~~~~~~~Il~~~~~~ 182 (364)
.. ....+...+........ ...++.|+||||+|.+... .++.|...++. ....+|.+|+...
T Consensus 245 l~ag~~~~g~~e~~lk~~~~~~~----~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~~--g~l~~IgaTt~~e 318 (857)
T PRK10865 245 LVAGAKYRGEFEERLKGVLNDLA----KQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALAR--GELHCVGATTLDE 318 (857)
T ss_pred hhhccchhhhhHHHHHHHHHHHH----HcCCCeEEEEecHHHhccCCCCccchhHHHHhcchhhc--CCCeEEEcCCCHH
Confidence 10 11122222332221100 0013679999999999632 46777777653 3566777776543
Q ss_pred -----cCchhhhccceEEEecCCChHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcC------CCHHHHHHHHHHHH
Q 017884 183 -----KIIPALQSRCTRFRFAPLEPVHVTERLKHVIEA----EGLDVTEGGLAALVRLCN------GDMRKALNILQSTH 247 (364)
Q Consensus 183 -----~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~----~~~~i~~~~~~~l~~~~~------g~~r~a~~~l~~~~ 247 (364)
..++++.+||+.+.+..|+.++...+++....+ .++.++++++...+..++ --+.+|+.+++.++
T Consensus 319 ~r~~~~~d~al~rRf~~i~v~eP~~~~~~~iL~~l~~~~e~~~~v~~~d~a~~~a~~ls~ry~~~~~~pdkAi~LiD~aa 398 (857)
T PRK10865 319 YRQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLKERYELHHHVQITDPAIVAAATLSHRYIADRQLPDKAIDLIDEAA 398 (857)
T ss_pred HHHHhhhcHHHHhhCCEEEeCCCCHHHHHHHHHHHhhhhccCCCCCcCHHHHHHHHHHhhccccCCCCChHHHHHHHHHh
Confidence 478899999988999999999999998876654 367888998887766663 34677888887665
Q ss_pred H
Q 017884 248 M 248 (364)
Q Consensus 248 ~ 248 (364)
.
T Consensus 399 a 399 (857)
T PRK10865 399 S 399 (857)
T ss_pred c
Confidence 4
No 139
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=1e-13 Score=122.89 Aligned_cols=172 Identities=20% Similarity=0.238 Sum_probs=113.9
Q ss_pred CCCcchhccHHHHHHHHHHHh----------cCCCCc--EEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCC--
Q 017884 50 QSLADVAAHRDIVDTIDRLTS----------ENRLPH--LLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDD-- 115 (364)
Q Consensus 50 ~~~~~~vg~~~~~~~l~~~~~----------~~~~~~--lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~-- 115 (364)
..|+++.|..++++.|+..+- ..+.|. +|++||||+|||.+|++++.+. ...|+.++.+..
T Consensus 209 ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvATEc-----~tTFFNVSsstltS 283 (491)
T KOG0738|consen 209 IKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATEC-----GTTFFNVSSSTLTS 283 (491)
T ss_pred cChHhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHHHHHhh-----cCeEEEechhhhhh
Confidence 479999999999998887763 334443 9999999999999999999996 455666655442
Q ss_pred --CC-hHHHHHHHHHHHhcCccccCCccceEEEEEeCCCCCCH------------HHHHHHHHHHHHhc-----cCccEE
Q 017884 116 --RG-IDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTK------------DAQFALRRVIEKYT-----KNTRFA 175 (364)
Q Consensus 116 --~~-~~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~~------------~~~~~L~~~le~~~-----~~~~~I 175 (364)
+| .+.+...+.+.+.. + -+.+|||||+|.+.. ..-..|+-.|+... ...++|
T Consensus 284 KwRGeSEKlvRlLFemARf----y----APStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~~t~e~~k~VmV 355 (491)
T KOG0738|consen 284 KWRGESEKLVRLLFEMARF----Y----APSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQGTLENSKVVMV 355 (491)
T ss_pred hhccchHHHHHHHHHHHHH----h----CCceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhccccccccceeEEE
Confidence 11 22334444444432 1 257999999999952 22456777777532 123445
Q ss_pred E-EeeccccCchhhhccc-eEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC
Q 017884 176 L-ICNQVNKIIPALQSRC-TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGD 235 (364)
Q Consensus 176 l-~~~~~~~l~~~l~sr~-~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~ 235 (364)
+ +||.++.+++++++|+ ..|.++-|+.+.....|...+ ..-...++-.++.|++.+.|-
T Consensus 356 LAATN~PWdiDEAlrRRlEKRIyIPLP~~~~R~~Li~~~l-~~~~~~~~~~~~~lae~~eGy 416 (491)
T KOG0738|consen 356 LAATNFPWDIDEALRRRLEKRIYIPLPDAEARSALIKILL-RSVELDDPVNLEDLAERSEGY 416 (491)
T ss_pred EeccCCCcchHHHHHHHHhhheeeeCCCHHHHHHHHHHhh-ccccCCCCccHHHHHHHhcCC
Confidence 4 4588999999999999 567666666665555554433 333333444567777776553
No 140
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.56 E-value=9.3e-14 Score=139.21 Aligned_cols=206 Identities=21% Similarity=0.239 Sum_probs=133.6
Q ss_pred cchhccHHHHHHHHHHHhc------CCCCcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCCCChHHHHHHHH
Q 017884 53 ADVAAHRDIVDTIDRLTSE------NRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQ 126 (364)
Q Consensus 53 ~~~vg~~~~~~~l~~~~~~------~~~~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 126 (364)
.+..|.+++++.+..++.. ...+.++|+||||+|||++++.+++.+. ..+..++.........+.....
T Consensus 322 ~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~-----~~~~~i~~~~~~d~~~i~g~~~ 396 (784)
T PRK10787 322 TDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATG-----RKYVRMALGGVRDEAEIRGHRR 396 (784)
T ss_pred hhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHhC-----CCEEEEEcCCCCCHHHhccchh
Confidence 3478999999988876652 2334589999999999999999999873 3444554433222222221111
Q ss_pred HHHhcCcc-------ccCCccceEEEEEeCCCCCCHHH----HHHHHHHHHHh---------------ccCccEEEEeec
Q 017884 127 DFASTQSF-------SFGVKASVKLVLLDEADAMTKDA----QFALRRVIEKY---------------TKNTRFALICNQ 180 (364)
Q Consensus 127 ~~~~~~~~-------~~~~~~~~~viiiDe~~~l~~~~----~~~L~~~le~~---------------~~~~~~Il~~~~ 180 (364)
.+....+- ..+. ...|++|||+|.+.... +.+|+.+++.- -+++.||+++|.
T Consensus 397 ~~~g~~~G~~~~~l~~~~~--~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i~TaN~ 474 (784)
T PRK10787 397 TYIGSMPGKLIQKMAKVGV--KNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNS 474 (784)
T ss_pred ccCCCCCcHHHHHHHhcCC--CCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCceEEEEcCCC
Confidence 11100000 0011 24599999999998764 58999998741 145566666666
Q ss_pred cccCchhhhccceEEEecCCChHHHHHHHHHHHHH----------cCCCCCHHHHHHHHHHcC--CCHHHHHHHHHHHHH
Q 017884 181 VNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEA----------EGLDVTEGGLAALVRLCN--GDMRKALNILQSTHM 248 (364)
Q Consensus 181 ~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~----------~~~~i~~~~~~~l~~~~~--g~~r~a~~~l~~~~~ 248 (364)
. .+++++.+||.++.|.+++.++..++++..+.. ..+.++++++..|++.+. --.|.+...+++.+.
T Consensus 475 ~-~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L~~k~~~~~~l~~~~l~i~~~ai~~ii~~yt~e~GaR~LeR~I~~i~r 553 (784)
T PRK10787 475 M-NIPAPLLDRMEVIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAGVRSLEREISKLCR 553 (784)
T ss_pred C-CCCHHHhcceeeeecCCCCHHHHHHHHHHhhhHHHHHHhCCCCCeEEECHHHHHHHHHhCCcccCCcHHHHHHHHHHH
Confidence 5 699999999999999999999999988777631 135789999999997542 113333333332221
Q ss_pred h-------c-----ccCchHHHHHhcCCCC
Q 017884 249 A-------S-----QQITEEAVYLCTGNPL 266 (364)
Q Consensus 249 ~-------~-----~~i~~~~v~~~~~~~~ 266 (364)
. . -.|+.+++.+.++...
T Consensus 554 ~~l~~~~~~~~~~~v~v~~~~~~~~lg~~~ 583 (784)
T PRK10787 554 KAVKQLLLDKSLKHIEINGDNLHDYLGVQR 583 (784)
T ss_pred HHHHHHHhcCCCceeeecHHHHHHHhCCCc
Confidence 1 1 1577888888877543
No 141
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.55 E-value=8.9e-14 Score=141.41 Aligned_cols=198 Identities=15% Similarity=0.209 Sum_probs=141.6
Q ss_pred hhccCCCCCcchhccHHHHHHHHHHHhcCCCCcEEEeCCCCccHHHHHHHHHHHHcCCC-----CCCcEEEEeCCCC---
Q 017884 44 VEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ-----YHNMILELNASDD--- 115 (364)
Q Consensus 44 ~~~~~p~~~~~~vg~~~~~~~l~~~~~~~~~~~lll~G~~G~GKt~la~~l~~~l~~~~-----~~~~~~~~~~~~~--- 115 (364)
.++-+...++.++|++..+..+.+++.....++++|+||||+|||++++.++..+.... ....++.++....
T Consensus 170 ~~~a~~~~~~~~igr~~ei~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~~l~ag 249 (821)
T CHL00095 170 TKEAIDGNLDPVIGREKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIGLLLAG 249 (821)
T ss_pred HHHHHcCCCCCCCCcHHHHHHHHHHHcccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHHHHhcc
Confidence 33446678999999999999999999888888899999999999999999999975322 1245566654321
Q ss_pred -CChHHHHHHHHHHHhcCccccCCccceEEEEEeCCCCCCH--------HHHHHHHHHHHHhccCccEEEEeeccc----
Q 017884 116 -RGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTK--------DAQFALRRVIEKYTKNTRFALICNQVN---- 182 (364)
Q Consensus 116 -~~~~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~~--------~~~~~L~~~le~~~~~~~~Il~~~~~~---- 182 (364)
.....+.+.+......... .++.|++|||+|.+.. ...+.|...+.. ...++|.+|+...
T Consensus 250 ~~~~ge~e~rl~~i~~~~~~-----~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~r--g~l~~IgaTt~~ey~~~ 322 (821)
T CHL00095 250 TKYRGEFEERLKRIFDEIQE-----NNNIILVIDEVHTLIGAGAAEGAIDAANILKPALAR--GELQCIGATTLDEYRKH 322 (821)
T ss_pred CCCccHHHHHHHHHHHHHHh-----cCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhC--CCcEEEEeCCHHHHHHH
Confidence 1122333334433322110 1367999999998853 235566666653 3566777776432
Q ss_pred -cCchhhhccceEEEecCCChHHHHHHHHHHHH----HcCCCCCHHHHHHHHHHcCC---C---HHHHHHHHHHHHH
Q 017884 183 -KIIPALQSRCTRFRFAPLEPVHVTERLKHVIE----AEGLDVTEGGLAALVRLCNG---D---MRKALNILQSTHM 248 (364)
Q Consensus 183 -~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~----~~~~~i~~~~~~~l~~~~~g---~---~r~a~~~l~~~~~ 248 (364)
...+.+.+|+..+.++.|+.++...+++.... ..++.++++++..++..+++ + |++|+++++.++.
T Consensus 323 ie~D~aL~rRf~~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls~~yi~~r~lPdkaidlld~a~a 399 (821)
T CHL00095 323 IEKDPALERRFQPVYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLSDQYIADRFLPDKAIDLLDEAGS 399 (821)
T ss_pred HhcCHHHHhcceEEecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCccccCchHHHHHHHHHHH
Confidence 46789999999999999999998888776543 24677999999999998864 3 8899999987664
No 142
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.55 E-value=5e-13 Score=113.35 Aligned_cols=191 Identities=18% Similarity=0.230 Sum_probs=132.9
Q ss_pred hhccCCCCCcchhccHHHHHHHH----HHHhcCCCCcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCCCChH
Q 017884 44 VEKYRPQSLADVAAHRDIVDTID----RLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGID 119 (364)
Q Consensus 44 ~~~~~p~~~~~~vg~~~~~~~l~----~~~~~~~~~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 119 (364)
+....|..+++++|-+..++.|. ..+.+....|+||||+.|||||++++++..+....+ ..++++.........
T Consensus 18 i~~~~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~G--LRlIev~k~~L~~l~ 95 (249)
T PF05673_consen 18 IKHPDPIRLDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQG--LRLIEVSKEDLGDLP 95 (249)
T ss_pred cCCCCCCCHHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhcC--ceEEEECHHHhccHH
Confidence 34567788999999777777654 444555556699999999999999999999987655 667787766554444
Q ss_pred HHHHHHHHHHhcCccccCCccceEEEEEeCCCCCCH-HHHHHHHHHHH----HhccCccEEEEeeccccCch--------
Q 017884 120 VVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTK-DAQFALRRVIE----KYTKNTRFALICNQVNKIIP-------- 186 (364)
Q Consensus 120 ~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~~-~~~~~L~~~le----~~~~~~~~Il~~~~~~~l~~-------- 186 (364)
.+.+.+.. .+ .+=||++||...=.. ..-..|..+|+ ..|.++.+..++|..+-+.+
T Consensus 96 ~l~~~l~~----~~-------~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATSNRRHLv~E~~~d~~~~ 164 (249)
T PF05673_consen 96 ELLDLLRD----RP-------YKFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATSNRRHLVPESFSDREDI 164 (249)
T ss_pred HHHHHHhc----CC-------CCEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEecchhhccchhhhhccCC
Confidence 44443331 12 245999999754433 33445555555 46777777777764432221
Q ss_pred ---------------hhhccc-eEEEecCCChHHHHHHHHHHHHHcCCCCCHHH-----HHHHHHHcCCCHHHHHHHHHH
Q 017884 187 ---------------ALQSRC-TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGG-----LAALVRLCNGDMRKALNILQS 245 (364)
Q Consensus 187 ---------------~l~sr~-~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~-----~~~l~~~~~g~~r~a~~~l~~ 245 (364)
.|..|| ..+.|.+++.++..+++...+.+.|+.++++. ++.-....+.+.|.|.+.++.
T Consensus 165 ~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~g~~~~~e~l~~~Al~wa~~rg~RSGRtA~QF~~~ 244 (249)
T PF05673_consen 165 QDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERYGLELDEEELRQEALQWALRRGGRSGRTARQFIDD 244 (249)
T ss_pred CccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 234465 78999999999999999999999999998533 344444445688888887765
Q ss_pred HH
Q 017884 246 TH 247 (364)
Q Consensus 246 ~~ 247 (364)
+.
T Consensus 245 l~ 246 (249)
T PF05673_consen 245 LA 246 (249)
T ss_pred Hh
Confidence 54
No 143
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.55 E-value=3e-13 Score=122.31 Aligned_cols=211 Identities=16% Similarity=0.224 Sum_probs=130.0
Q ss_pred CCCCCcchhccHHHHHHHHHHHhcCCCCcEEEeCCCCccHHHHHHHHHHHHcCCCCC----CcEEE--------------
Q 017884 48 RPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYH----NMILE-------------- 109 (364)
Q Consensus 48 ~p~~~~~~vg~~~~~~~l~~~~~~~~~~~lll~G~~G~GKt~la~~l~~~l~~~~~~----~~~~~-------------- 109 (364)
.|..|.+++||++++..+.-.+-.....|+||+|+||+|||++++++++.+.+.... +.+..
T Consensus 3 ~~~~f~~i~Gq~~~~~~l~~~~~~~~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 82 (334)
T PRK13407 3 KPFPFSAIVGQEEMKQAMVLTAIDPGIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPEDCPEWAHVSSTT 82 (334)
T ss_pred CCCCHHHhCCHHHHHHHHHHHHhccCCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCcccCCcccccccCCc
Confidence 467899999999999988765543445789999999999999999999998431100 00000
Q ss_pred ----------E--eCCC--CCChHHHHHHHHHHHhcCccccCC----ccceEEEEEeCCCCCCHHHHHHHHHHHHHhc--
Q 017884 110 ----------L--NASD--DRGIDVVRQQIQDFASTQSFSFGV----KASVKLVLLDEADAMTKDAQFALRRVIEKYT-- 169 (364)
Q Consensus 110 ----------~--~~~~--~~~~~~~~~~i~~~~~~~~~~~~~----~~~~~viiiDe~~~l~~~~~~~L~~~le~~~-- 169 (364)
+ +.+. ..|.-++...+.. ..+.+.. ..+++++++||++.+++..+..|+..|++..
T Consensus 83 ~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~----g~~~~~~G~l~~A~~GiL~lDEInrl~~~~q~~Lle~mee~~v~ 158 (334)
T PRK13407 83 MIERPTPVVDLPLGVTEDRVVGALDIERALTR----GEKAFEPGLLARANRGYLYIDEVNLLEDHIVDLLLDVAQSGENV 158 (334)
T ss_pred ccccCCccccCCCCCCcceeecchhhhhhhhc----CCeeecCCceEEcCCCeEEecChHhCCHHHHHHHHHHHHcCCeE
Confidence 0 0000 0011111111110 0110111 1245799999999999999999999998642
Q ss_pred ---------cCccEEEEe--eccc-cCchhhhccc-eEEEecCCCh-HHHHHHHHHHHH---------------------
Q 017884 170 ---------KNTRFALIC--NQVN-KIIPALQSRC-TRFRFAPLEP-VHVTERLKHVIE--------------------- 214 (364)
Q Consensus 170 ---------~~~~~Il~~--~~~~-~l~~~l~sr~-~~i~~~~~~~-~~~~~~l~~~~~--------------------- 214 (364)
....|++++ |... .+.+.+..|+ ..+.+.++.. ++..+++.....
T Consensus 159 v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLldRF~~~v~v~~~~~~~e~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (334)
T PRK13407 159 VEREGLSIRHPARFVLVGSGNPEEGELRPQLLDRFGLSVEVRSPRDVETRVEVIRRRDAYDADHDAFMAKWGAEDMQLRG 238 (334)
T ss_pred EEECCeEEecCCCEEEEecCCcccCCCCHHHHhhcceEEEcCCCCcHHHHHHHHHHhhcccccchhhhccccccccCCHH
Confidence 123444443 4322 5778899998 5677776665 554555544211
Q ss_pred --------HcCCCCCHHHHHHHHHHc---C-CCHHHHHHHHHHHHHhc-----ccCchHHHHHhc
Q 017884 215 --------AEGLDVTEGGLAALVRLC---N-GDMRKALNILQSTHMAS-----QQITEEAVYLCT 262 (364)
Q Consensus 215 --------~~~~~i~~~~~~~l~~~~---~-g~~r~a~~~l~~~~~~~-----~~i~~~~v~~~~ 262 (364)
-..+.++++.++++++.+ + ..+|..+.++..+...+ ..++.++|..+.
T Consensus 239 ~i~~a~~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~l~~aA~a~A~l~Gr~~V~~~Di~~~~ 303 (334)
T PRK13407 239 RILGARARLPQLKTPNTVLHDCAALCIALGSDGLRGELTLLRAARALAAFEGAEAVGRSHLRSVA 303 (334)
T ss_pred HHHHHHHhcCCcccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHcCCCeeCHHHHHHHH
Confidence 124678888888888765 2 35777777665444322 478888886654
No 144
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=99.54 E-value=1.2e-13 Score=118.03 Aligned_cols=119 Identities=21% Similarity=0.298 Sum_probs=99.1
Q ss_pred eEEEEEeCCCCCCHHHHHHHHHHHHHhccCccEEEEee-------------ccccCchhhhccceEEEecCCChHHHHHH
Q 017884 142 VKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICN-------------QVNKIIPALQSRCTRFRFAPLEPVHVTER 208 (364)
Q Consensus 142 ~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~-------------~~~~l~~~l~sr~~~i~~~~~~~~~~~~~ 208 (364)
++|+||||+|.|.-++...|.+.++.+- ...+||++| .++-+++.+..|..++.-.++++++++++
T Consensus 297 PGVLFIDEVhMLDiEcFTyL~kalES~i-aPivifAsNrG~~~irGt~d~~sPhGip~dllDRl~Iirt~~y~~~e~r~I 375 (456)
T KOG1942|consen 297 PGVLFIDEVHMLDIECFTYLHKALESPI-APIVIFASNRGMCTIRGTEDILSPHGIPPDLLDRLLIIRTLPYDEEEIRQI 375 (456)
T ss_pred CcceEeeehhhhhhHHHHHHHHHhcCCC-CceEEEecCCcceeecCCcCCCCCCCCCHHHhhheeEEeeccCCHHHHHHH
Confidence 6799999999999999999999998754 556788875 45678899999999999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHc-CCCHHHHHHHHHHHHH----hc-ccCchHHHHHh
Q 017884 209 LKHVIEAEGLDVTEGGLAALVRLC-NGDMRKALNILQSTHM----AS-QQITEEAVYLC 261 (364)
Q Consensus 209 l~~~~~~~~~~i~~~~~~~l~~~~-~g~~r~a~~~l~~~~~----~~-~~i~~~~v~~~ 261 (364)
+..+++.+++.++++++..+++.. ..++|.++++|.-+.. +. ..|..++|+++
T Consensus 376 i~~Ra~~E~l~~~e~a~~~l~~~gt~tsLRy~vqLl~p~~~~ak~~g~~~i~v~dvee~ 434 (456)
T KOG1942|consen 376 IKIRAQVEGLQVEEEALDLLAEIGTSTSLRYAVQLLTPASILAKTNGRKEISVEDVEEV 434 (456)
T ss_pred HHHHHhhhcceecHHHHHHHHhhccchhHHHHHHhcCHHHHHHHHcCCceeecccHHHH
Confidence 999999999999999999999875 5789999998853222 22 26666666554
No 145
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.54 E-value=2e-13 Score=121.92 Aligned_cols=147 Identities=16% Similarity=0.213 Sum_probs=105.9
Q ss_pred EEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCC------CChHHHHHHHHHHHhcCccccCCccceEEEEEeCC
Q 017884 77 LLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDD------RGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEA 150 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~------~~~~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~ 150 (364)
++||||||||||.+++++++++ ...++.+++... .+...+++.+..+..... ....+.+|+|||+
T Consensus 151 llL~GPPGcGKTllAraiA~el-----g~~~i~vsa~eL~sk~vGEsEk~IR~~F~~A~~~a~----~~~aPcVLFIDEI 221 (413)
T PLN00020 151 LGIWGGKGQGKSFQCELVFKKM-----GIEPIVMSAGELESENAGEPGKLIRQRYREAADIIK----KKGKMSCLFINDL 221 (413)
T ss_pred EEeeCCCCCCHHHHHHHHHHHc-----CCCeEEEEHHHhhcCcCCcHHHHHHHHHHHHHHHhh----ccCCCeEEEEehh
Confidence 7999999999999999999997 456677766432 223455555554433210 1114789999999
Q ss_pred CCCCHH-----------H-HHHHHHHHHHh--------------ccCccEEEEeeccccCchhhhc--cceEEEecCCCh
Q 017884 151 DAMTKD-----------A-QFALRRVIEKY--------------TKNTRFALICNQVNKIIPALQS--RCTRFRFAPLEP 202 (364)
Q Consensus 151 ~~l~~~-----------~-~~~L~~~le~~--------------~~~~~~Il~~~~~~~l~~~l~s--r~~~i~~~~~~~ 202 (364)
|.+... . ...|+..++.+ ...+.+|.+||.++.++++|++ |+... +..|+.
T Consensus 222 DA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpALlRpGRfDk~-i~lPd~ 300 (413)
T PLN00020 222 DAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAPLIRDGRMEKF-YWAPTR 300 (413)
T ss_pred hhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCCHhHcCCCCCCce-eCCCCH
Confidence 988531 1 13566666542 3456678888999999999998 77443 457899
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC
Q 017884 203 VHVTERLKHVIEAEGLDVTEGGLAALVRLCNGD 235 (364)
Q Consensus 203 ~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~ 235 (364)
++..++++.++++. .++...+..|+....|.
T Consensus 301 e~R~eIL~~~~r~~--~l~~~dv~~Lv~~f~gq 331 (413)
T PLN00020 301 EDRIGVVHGIFRDD--GVSREDVVKLVDTFPGQ 331 (413)
T ss_pred HHHHHHHHHHhccC--CCCHHHHHHHHHcCCCC
Confidence 99999999888865 46788888999888775
No 146
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.54 E-value=2.2e-13 Score=137.98 Aligned_cols=185 Identities=27% Similarity=0.379 Sum_probs=133.3
Q ss_pred cchhccHHHHHHHHHHHhc-------CCCC--cEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCCCChHHH--
Q 017884 53 ADVAAHRDIVDTIDRLTSE-------NRLP--HLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVV-- 121 (364)
Q Consensus 53 ~~~vg~~~~~~~l~~~~~~-------~~~~--~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-- 121 (364)
..++||+..+..+.+.+.. ...| .++|+||+|+|||.+|+++++.++... ..++.++.+.......+
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~--~~~~~~dmse~~~~~~~~~ 643 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGGE--QNLITINMSEFQEAHTVSR 643 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCCC--cceEEEeHHHhhhhhhhcc
Confidence 5689999999988887752 1222 279999999999999999999986433 23444443321100000
Q ss_pred -------------HHHHHHHHhcCccccCCccceEEEEEeCCCCCCHHHHHHHHHHHHHhc-----------cCccEEEE
Q 017884 122 -------------RQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYT-----------KNTRFALI 177 (364)
Q Consensus 122 -------------~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~-----------~~~~~Il~ 177 (364)
...+....... ++.||+|||++.+.+..++.|+.++++.. .++.+|++
T Consensus 644 l~g~~~gyvg~~~~g~L~~~v~~~--------p~svvllDEieka~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~T 715 (852)
T TIGR03345 644 LKGSPPGYVGYGEGGVLTEAVRRK--------PYSVVLLDEVEKAHPDVLELFYQVFDKGVMEDGEGREIDFKNTVILLT 715 (852)
T ss_pred ccCCCCCcccccccchHHHHHHhC--------CCcEEEEechhhcCHHHHHHHHHHhhcceeecCCCcEEeccccEEEEe
Confidence 01122222211 46799999999999999999999999764 67888888
Q ss_pred eeccc-----------------------------cCchhhhccceEEEecCCChHHHHHHHHHHHHH-------c-C--C
Q 017884 178 CNQVN-----------------------------KIIPALQSRCTRFRFAPLEPVHVTERLKHVIEA-------E-G--L 218 (364)
Q Consensus 178 ~~~~~-----------------------------~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~-------~-~--~ 218 (364)
||-.. .+.|.+.+|+.++.|.|++.+++.+++...+.. . + +
T Consensus 716 SNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEflnRi~iI~F~pLs~e~l~~Iv~~~L~~l~~rl~~~~gi~l 795 (852)
T TIGR03345 716 SNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLGRMTVIPYLPLDDDVLAAIVRLKLDRIARRLKENHGAEL 795 (852)
T ss_pred CCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhcceeEEEeCCCCHHHHHHHHHHHHHHHHHHHHHhcCceE
Confidence 76210 256778899999999999999999988776543 1 4 4
Q ss_pred CCCHHHHHHHHHHcCC---CHHHHHHHHHHHH
Q 017884 219 DVTEGGLAALVRLCNG---DMRKALNILQSTH 247 (364)
Q Consensus 219 ~i~~~~~~~l~~~~~g---~~r~a~~~l~~~~ 247 (364)
.++++++++|++.+.+ ..|.+.+.++...
T Consensus 796 ~i~d~a~~~La~~g~~~~~GAR~L~r~Ie~~i 827 (852)
T TIGR03345 796 VYSEALVEHIVARCTEVESGARNIDAILNQTL 827 (852)
T ss_pred EECHHHHHHHHHHcCCCCCChHHHHHHHHHHH
Confidence 6799999999999866 6898888887644
No 147
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.52 E-value=4.4e-13 Score=133.44 Aligned_cols=180 Identities=19% Similarity=0.266 Sum_probs=123.9
Q ss_pred cchhccHHHHHHHHHHHhcC--------C-CCcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCCCChHHHHH
Q 017884 53 ADVAAHRDIVDTIDRLTSEN--------R-LPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQ 123 (364)
Q Consensus 53 ~~~vg~~~~~~~l~~~~~~~--------~-~~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (364)
..++||++++..+...+... + ..+++|+||||+|||++|+.+++.+. ..++.++++.......+..
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~-----~~~i~id~se~~~~~~~~~ 532 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG-----IELLRFDMSEYMERHTVSR 532 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhC-----CCcEEeechhhcccccHHH
Confidence 34799999999998887731 1 23489999999999999999999983 3445555543221111111
Q ss_pred ---------------HHHHHHhcCccccCCccceEEEEEeCCCCCCHHHHHHHHHHHHHhc-----------cCccEEEE
Q 017884 124 ---------------QIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYT-----------KNTRFALI 177 (364)
Q Consensus 124 ---------------~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~-----------~~~~~Il~ 177 (364)
.+...... .+++||++||++.+.++.++.|+++|++.. .++.+|++
T Consensus 533 LiG~~~gyvg~~~~g~L~~~v~~--------~p~sVlllDEieka~~~v~~~LLq~ld~G~ltd~~g~~vd~rn~iiI~T 604 (758)
T PRK11034 533 LIGAPPGYVGFDQGGLLTDAVIK--------HPHAVLLLDEIEKAHPDVFNLLLQVMDNGTLTDNNGRKADFRNVVLVMT 604 (758)
T ss_pred HcCCCCCcccccccchHHHHHHh--------CCCcEEEeccHhhhhHHHHHHHHHHHhcCeeecCCCceecCCCcEEEEe
Confidence 11111111 136799999999999999999999998642 35668888
Q ss_pred eecc-------------------------ccCchhhhccc-eEEEecCCChHHHHHHHHHHHH-------HcC--CCCCH
Q 017884 178 CNQV-------------------------NKIIPALQSRC-TRFRFAPLEPVHVTERLKHVIE-------AEG--LDVTE 222 (364)
Q Consensus 178 ~~~~-------------------------~~l~~~l~sr~-~~i~~~~~~~~~~~~~l~~~~~-------~~~--~~i~~ 222 (364)
||.. ..+.|.+..|+ .++.|.|++.+++.+++...+. ..| +.+++
T Consensus 605 sN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~Rid~ii~f~~L~~~~l~~I~~~~l~~~~~~l~~~~i~l~~~~ 684 (758)
T PRK11034 605 TNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQAQLDQKGVSLEVSQ 684 (758)
T ss_pred CCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHccCCEEEEcCCCCHHHHHHHHHHHHHHHHHHHHHCCCCceECH
Confidence 8721 12457888888 6899999999999888776543 234 45689
Q ss_pred HHHHHHHHHcC---CCHHHHHHHHHH
Q 017884 223 GGLAALVRLCN---GDMRKALNILQS 245 (364)
Q Consensus 223 ~~~~~l~~~~~---g~~r~a~~~l~~ 245 (364)
+++++|++..- ...|.+...++.
T Consensus 685 ~~~~~l~~~~~~~~~GAR~l~r~i~~ 710 (758)
T PRK11034 685 EARDWLAEKGYDRAMGARPMARVIQD 710 (758)
T ss_pred HHHHHHHHhCCCCCCCCchHHHHHHH
Confidence 99999997652 224444444443
No 148
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=6.9e-13 Score=128.66 Aligned_cols=201 Identities=20% Similarity=0.246 Sum_probs=138.1
Q ss_pred CCCCCcchhccHHHHHHHHHHHh-----------cCCCCc-EEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCC
Q 017884 48 RPQSLADVAAHRDIVDTIDRLTS-----------ENRLPH-LLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDD 115 (364)
Q Consensus 48 ~p~~~~~~vg~~~~~~~l~~~~~-----------~~~~~~-lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~ 115 (364)
.+..|+|+.|.++++..|.+.+. +.++|. +||+||||||||.+|+++|.+. ...|+.+++++.
T Consensus 306 t~V~FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEA-----gVPF~svSGSEF 380 (774)
T KOG0731|consen 306 TGVKFKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEA-----GVPFFSVSGSEF 380 (774)
T ss_pred CCCccccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhccc-----CCceeeechHHH
Confidence 34689999999999998877764 235555 9999999999999999999985 667777777653
Q ss_pred C------ChHHHHHHHHHHHhcCccccCCccceEEEEEeCCCCCCH---------------HHHHHHHHHHHHhcc--Cc
Q 017884 116 R------GIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTK---------------DAQFALRRVIEKYTK--NT 172 (364)
Q Consensus 116 ~------~~~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~~---------------~~~~~L~~~le~~~~--~~ 172 (364)
- +...+++....... ..+.+|+|||+|.+.. ...+.|+--|+.+.. .+
T Consensus 381 vE~~~g~~asrvr~lf~~ar~---------~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~v 451 (774)
T KOG0731|consen 381 VEMFVGVGASRVRDLFPLARK---------NAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGV 451 (774)
T ss_pred HHHhcccchHHHHHHHHHhhc---------cCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcE
Confidence 1 22233333222221 1478999999998852 124555555665443 34
Q ss_pred cEEEEeeccccCchhhhc--cc-eEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHH-HHHHHH
Q 017884 173 RFALICNQVNKIIPALQS--RC-TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNI-LQSTHM 248 (364)
Q Consensus 173 ~~Il~~~~~~~l~~~l~s--r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~a~~~-l~~~~~ 248 (364)
+++.+||.++-+++++.+ |+ ..+....|+.....+++...+.+.....++..+..++..+.|....-+.. +..++.
T Consensus 452 i~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~n~~neaa~ 531 (774)
T KOG0731|consen 452 IVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSGADLANLCNEAAL 531 (774)
T ss_pred EEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHHHHhcCCCCcHHHHHhhhhHHHH
Confidence 455567888999999987 55 67999999999999999988877666556666666898887765554433 333222
Q ss_pred h-----cccCchHHHHHhc
Q 017884 249 A-----SQQITEEAVYLCT 262 (364)
Q Consensus 249 ~-----~~~i~~~~v~~~~ 262 (364)
. ...|+..++..++
T Consensus 532 ~a~r~~~~~i~~~~~~~a~ 550 (774)
T KOG0731|consen 532 LAARKGLREIGTKDLEYAI 550 (774)
T ss_pred HHHHhccCccchhhHHHHH
Confidence 1 2366666665544
No 149
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=1.4e-13 Score=118.01 Aligned_cols=172 Identities=20% Similarity=0.255 Sum_probs=114.2
Q ss_pred CCcchhccHHHHHHHHHHHh----------cCCCCc--EEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCCC--
Q 017884 51 SLADVAAHRDIVDTIDRLTS----------ENRLPH--LLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDR-- 116 (364)
Q Consensus 51 ~~~~~vg~~~~~~~l~~~~~----------~~~~~~--lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~-- 116 (364)
.|+++.|.+.+++.|+..+- .++.|. +|||||||+||+++|++++.+. ...|+.++.++.-
T Consensus 131 kWsDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEA-----nSTFFSvSSSDLvSK 205 (439)
T KOG0739|consen 131 KWSDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEA-----NSTFFSVSSSDLVSK 205 (439)
T ss_pred chhhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhc-----CCceEEeehHHHHHH
Confidence 79999999999999988752 444444 9999999999999999999986 3445555544321
Q ss_pred ---ChHHHHHHHHHHHhcCccccCCccceEEEEEeCCCCCCHH-----------HHHHHHHHHHHhc---cCccEEEEee
Q 017884 117 ---GIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKD-----------AQFALRRVIEKYT---KNTRFALICN 179 (364)
Q Consensus 117 ---~~~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~-----------~~~~L~~~le~~~---~~~~~Il~~~ 179 (364)
..+.+...+.+.+ .+..+.||+|||+|.+... .-..|+-.|+.-. ..+.++.+||
T Consensus 206 WmGESEkLVknLFemA--------Re~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvLVLgATN 277 (439)
T KOG0739|consen 206 WMGESEKLVKNLFEMA--------RENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVLVLGATN 277 (439)
T ss_pred HhccHHHHHHHHHHHH--------HhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCceEEEecCC
Confidence 1112222222222 2235789999999998521 1233555555432 2233445678
Q ss_pred ccccCchhhhccc-eEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC
Q 017884 180 QVNKIIPALQSRC-TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGD 235 (364)
Q Consensus 180 ~~~~l~~~l~sr~-~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~ 235 (364)
-++.++.+|++|+ ..|.++-|........+.-.+......+++....+|+..+.|-
T Consensus 278 iPw~LDsAIRRRFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeGy 334 (439)
T KOG0739|consen 278 IPWVLDSAIRRRFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTEGY 334 (439)
T ss_pred CchhHHHHHHHHhhcceeccCCcHHHhhhhheeccCCCccccchhhHHHHHhhcCCC
Confidence 8899999999999 5677755555544444444444445578899999999988663
No 150
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=99.51 E-value=7.1e-13 Score=129.31 Aligned_cols=212 Identities=17% Similarity=0.169 Sum_probs=144.1
Q ss_pred hccCCCCCcchhccHHHHHHHHHHHhcC--CCCcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCCCChHHHH
Q 017884 45 EKYRPQSLADVAAHRDIVDTIDRLTSEN--RLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVR 122 (364)
Q Consensus 45 ~~~~p~~~~~~vg~~~~~~~l~~~~~~~--~~~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 122 (364)
.+++..+|+.++|+...+..+.+.+... ...+++|+|++||||+++|++++..... ....++.+||..... ..+.
T Consensus 188 ~~~~~~~~~~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~s~r--~~~pfv~i~c~~~~~-~~~~ 264 (534)
T TIGR01817 188 ARRRSGKEDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLSPR--AKRPFVKVNCAALSE-TLLE 264 (534)
T ss_pred cccccCccCceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHhCCC--CCCCeEEeecCCCCH-HHHH
Confidence 3456678999999999888887777643 2334999999999999999999987432 234677888876422 2222
Q ss_pred HHHHHHHh-----cC--ccccCCccceEEEEEeCCCCCCHHHHHHHHHHHHHhc-----------cCccEEEEeecc---
Q 017884 123 QQIQDFAS-----TQ--SFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYT-----------KNTRFALICNQV--- 181 (364)
Q Consensus 123 ~~i~~~~~-----~~--~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~-----------~~~~~Il~~~~~--- 181 (364)
..+..... .. ....-....+++++|||++.|+...|..|++++++.. .++++|++++..
T Consensus 265 ~~lfg~~~~~~~~~~~~~~g~~~~a~~GtL~ldei~~L~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~s~~~l~~ 344 (534)
T TIGR01817 265 SELFGHEKGAFTGAIAQRKGRFELADGGTLFLDEIGEISPAFQAKLLRVLQEGEFERVGGNRTLKVDVRLVAATNRDLEE 344 (534)
T ss_pred HHHcCCCCCccCCCCcCCCCcccccCCCeEEEechhhCCHHHHHHHHHHHhcCcEEECCCCceEeecEEEEEeCCCCHHH
Confidence 22211000 00 0000112357899999999999999999999998642 246777777532
Q ss_pred ----ccCchhhhccc--eEEEecCCCh--HHHHHHHHHHHH----HcC--CCCCHHHHHHHHHHc-CCCHHHHHHHHHHH
Q 017884 182 ----NKIIPALQSRC--TRFRFAPLEP--VHVTERLKHVIE----AEG--LDVTEGGLAALVRLC-NGDMRKALNILQST 246 (364)
Q Consensus 182 ----~~l~~~l~sr~--~~i~~~~~~~--~~~~~~l~~~~~----~~~--~~i~~~~~~~l~~~~-~g~~r~a~~~l~~~ 246 (364)
..+.+.|..|+ ..+.+||+.+ +++..++...+. +.+ ..+++++++.|..+. +||+|.+.+.++.+
T Consensus 345 ~~~~~~f~~~L~~rl~~~~i~lPpLreR~eDi~~L~~~~l~~~~~~~~~~~~~s~~a~~~L~~~~WPGNvrEL~~v~~~a 424 (534)
T TIGR01817 345 AVAKGEFRADLYYRINVVPIFLPPLRERREDIPLLAEAFLEKFNRENGRPLTITPSAIRVLMSCKWPGNVRELENCLERT 424 (534)
T ss_pred HHHcCCCCHHHHHHhcCCeeeCCCcccccccHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhCCCCChHHHHHHHHHHH
Confidence 23445565665 4577888873 556555444433 222 578999999999885 99999999999987
Q ss_pred HHhc--ccCchHHHH
Q 017884 247 HMAS--QQITEEAVY 259 (364)
Q Consensus 247 ~~~~--~~i~~~~v~ 259 (364)
.... ..|+.+++.
T Consensus 425 ~~~~~~~~I~~~~l~ 439 (534)
T TIGR01817 425 ATLSRSGTITRSDFS 439 (534)
T ss_pred HHhCCCCcccHHHCc
Confidence 7643 367777764
No 151
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.51 E-value=5.6e-13 Score=131.78 Aligned_cols=205 Identities=19% Similarity=0.210 Sum_probs=137.6
Q ss_pred hhhccCCCCCcchhccHHHHHHHHHHHhc-----------CC-CCcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEE
Q 017884 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSE-----------NR-LPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILEL 110 (364)
Q Consensus 43 ~~~~~~p~~~~~~vg~~~~~~~l~~~~~~-----------~~-~~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~ 110 (364)
|.......+|+++.|.+..+..+...+.. +. .++++|+||||+|||+++++++.++ ...++.+
T Consensus 142 ~~~~~~~~~~~di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~-----~~~f~~i 216 (644)
T PRK10733 142 LTEDQIKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA-----KVPFFTI 216 (644)
T ss_pred cCchhhhCcHHHHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc-----CCCEEEE
Confidence 33344556899999988888877666532 12 2349999999999999999999987 3455666
Q ss_pred eCCCC------CChHHHHHHHHHHHhcCccccCCccceEEEEEeCCCCCCH--------------HHHHHHHHHHHHhcc
Q 017884 111 NASDD------RGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTK--------------DAQFALRRVIEKYTK 170 (364)
Q Consensus 111 ~~~~~------~~~~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~~--------------~~~~~L~~~le~~~~ 170 (364)
++++. .+...++..+...... .++||+|||+|.+.. ...+.|+..|+....
T Consensus 217 s~~~~~~~~~g~~~~~~~~~f~~a~~~---------~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~ 287 (644)
T PRK10733 217 SGSDFVEMFVGVGASRVRDMFEQAKKA---------APCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEG 287 (644)
T ss_pred ehHHhHHhhhcccHHHHHHHHHHHHhc---------CCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccC
Confidence 55431 1223333333332211 367999999999842 123555655665443
Q ss_pred --CccEEEEeeccccCchhhhc--cc-eEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC----CHHHHHH
Q 017884 171 --NTRFALICNQVNKIIPALQS--RC-TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNG----DMRKALN 241 (364)
Q Consensus 171 --~~~~Il~~~~~~~l~~~l~s--r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g----~~r~a~~ 241 (364)
.+.+|.+||.++.+++++.+ |+ ..+.++.|+.++..+++...+.+..+.- +..+..+++.+.| |+..+++
T Consensus 288 ~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~-~~d~~~la~~t~G~sgadl~~l~~ 366 (644)
T PRK10733 288 NEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAP-DIDAAIIARGTPGFSGADLANLVN 366 (644)
T ss_pred CCCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCC-cCCHHHHHhhCCCCCHHHHHHHHH
Confidence 35567788999999999986 77 7799999999999999998887544321 2235667888776 7777766
Q ss_pred HHHHHHHh--cccCchHHHHHhc
Q 017884 242 ILQSTHMA--SQQITEEAVYLCT 262 (364)
Q Consensus 242 ~l~~~~~~--~~~i~~~~v~~~~ 262 (364)
.....+.. ...|+..++..+.
T Consensus 367 eAa~~a~r~~~~~i~~~d~~~a~ 389 (644)
T PRK10733 367 EAALFAARGNKRVVSMVEFEKAK 389 (644)
T ss_pred HHHHHHHHcCCCcccHHHHHHHH
Confidence 66544332 2468888876653
No 152
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=99.50 E-value=6.7e-12 Score=119.25 Aligned_cols=174 Identities=25% Similarity=0.352 Sum_probs=126.4
Q ss_pred cEEEeCCCCccHHHHHHHHHHHHcC-----CCCCCcEEEEeCCCCCChHHHHHHHHHHHhcCc-----------cccC--
Q 017884 76 HLLLYGPPGTGKTSTILAVARKLYG-----AQYHNMILELNASDDRGIDVVRQQIQDFASTQS-----------FSFG-- 137 (364)
Q Consensus 76 ~lll~G~~G~GKt~la~~l~~~l~~-----~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-----------~~~~-- 137 (364)
.++++|-||+|||.+++.+.+.|.. .-+.+.++++|+....+...+...|-....... +.|.
T Consensus 424 ~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~ 503 (767)
T KOG1514|consen 424 CMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIYEKIWEALSGERVTWDAALEALNFRFTVP 503 (767)
T ss_pred eEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHHHHHHHhcccCcccHHHHHHHHHHhhccC
Confidence 4899999999999999999998752 235678899999877666665555533221111 1111
Q ss_pred -CccceEEEEEeCCCCCCHHHHHHHHHHHHHhcc-Ccc--EEEEeeccc---c-Cchhhhcc--ceEEEecCCChHHHHH
Q 017884 138 -VKASVKLVLLDEADAMTKDAQFALRRVIEKYTK-NTR--FALICNQVN---K-IIPALQSR--CTRFRFAPLEPVHVTE 207 (364)
Q Consensus 138 -~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~-~~~--~Il~~~~~~---~-l~~~l~sr--~~~i~~~~~~~~~~~~ 207 (364)
+.....||+|||.|.|....|+.|..+++++.. +.. +|.++|..+ + +...+-|| +..+.|.|++..++.+
T Consensus 504 k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~IaNTmdlPEr~l~nrvsSRlg~tRi~F~pYth~qLq~ 583 (767)
T KOG1514|consen 504 KPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIAIANTMDLPERLLMNRVSSRLGLTRICFQPYTHEQLQE 583 (767)
T ss_pred CCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEEecccccCHHHHhccchhhhccceeeecCCCCHHHHHH
Confidence 233577999999999999999999999998752 333 444444332 2 22345566 4889999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHc---CCCHHHHHHHHHHHHHhc
Q 017884 208 RLKHVIEAEGLDVTEGGLAALVRLC---NGDMRKALNILQSTHMAS 250 (364)
Q Consensus 208 ~l~~~~~~~~~~i~~~~~~~l~~~~---~g~~r~a~~~l~~~~~~~ 250 (364)
++..+++.. ..++.++++.++... .||.|+|++.++++...+
T Consensus 584 Ii~~RL~~~-~~f~~~aielvarkVAavSGDaRraldic~RA~Eia 628 (767)
T KOG1514|consen 584 IISARLKGL-DAFENKAIELVARKVAAVSGDARRALDICRRAAEIA 628 (767)
T ss_pred HHHHhhcch-hhcchhHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 999888754 457888888887654 699999999998877543
No 153
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.49 E-value=1.5e-13 Score=108.66 Aligned_cols=113 Identities=29% Similarity=0.367 Sum_probs=80.6
Q ss_pred EEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCCC--ChHHHHHHHHHHHhcCccccCCccceEEEEEeCCCCCC
Q 017884 77 LLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDR--GIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMT 154 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~ 154 (364)
++|+||||+|||++++.+++.+ ...++.+++.... ........+..+...... .. .+.|++|||+|.+.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l-----~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~-~~---~~~vl~iDe~d~l~ 71 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL-----GFPFIEIDGSELISSYAGDSEQKIRDFFKKAKK-SA---KPCVLFIDEIDKLF 71 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT-----TSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHH-TS---TSEEEEEETGGGTS
T ss_pred CEEECcCCCCeeHHHHHHHhhc-----ccccccccccccccccccccccccccccccccc-cc---cceeeeeccchhcc
Confidence 6899999999999999999997 4667788775532 112222223332222110 01 26899999999998
Q ss_pred HHH-----------HHHHHHHHHHhcc---CccEEEEeeccccCchhhh-ccc-eEEEec
Q 017884 155 KDA-----------QFALRRVIEKYTK---NTRFALICNQVNKIIPALQ-SRC-TRFRFA 198 (364)
Q Consensus 155 ~~~-----------~~~L~~~le~~~~---~~~~Il~~~~~~~l~~~l~-sr~-~~i~~~ 198 (364)
... .+.|+..++.... .+.+|++||..+.+.+++. +|| ..++++
T Consensus 72 ~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~~i~~~l~~~rf~~~i~~~ 131 (132)
T PF00004_consen 72 PKSQPSSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPDKIDPALLRSRFDRRIEFP 131 (132)
T ss_dssp HHCSTSSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGGGSCHHHHSTTSEEEEEE-
T ss_pred cccccccccccccccceeeecccccccccccceeEEeeCChhhCCHhHHhCCCcEEEEcC
Confidence 765 7788888888765 3778889999999999999 998 456553
No 154
>PRK08485 DNA polymerase III subunit delta'; Validated
Probab=99.49 E-value=2.4e-13 Score=111.20 Aligned_cols=125 Identities=19% Similarity=0.228 Sum_probs=107.3
Q ss_pred CCCChHHHHHHHHHHHhcCccccCCccceEEEEEeCCCCCCHHHHHHHHHHHHHhccCccEEEEeeccccCchhhhccce
Q 017884 114 DDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCT 193 (364)
Q Consensus 114 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~l~~~l~sr~~ 193 (364)
+..+++.+++.+...... +. ..++ +|+++|.|+..++++|++++|+||.++.||++|+.+.++.++++|||+
T Consensus 35 ~~i~Vd~iReii~~~~~~-~~------~~k~-iI~~a~~l~~~A~NaLLK~LEEPp~~~~fiL~t~~~~~llpTI~SRc~ 106 (206)
T PRK08485 35 EEFKIEDAKEVIAEAYIA-ES------EEKI-IVIAAPSYGIEAQNALLKILEEPPKNICFIIVAKSKNLLLPTIRSRLI 106 (206)
T ss_pred CCCCHHHHHHHHHHHhhC-CC------CcEE-EEEchHhhCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCchHHHhhhe
Confidence 357889999877775433 21 2444 578999999999999999999999999999999999999999999998
Q ss_pred E-------------EEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 017884 194 R-------------FRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTH 247 (364)
Q Consensus 194 ~-------------i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~a~~~l~~~~ 247 (364)
+ +.|.+++.+++.+++.. ..++++...+++.+.|+..+.|.+|.++.+.+...
T Consensus 107 ~~~~~~~~~~~~l~l~l~~l~~~~i~~~L~~-~~ke~~~~~~ea~~lIa~la~~s~r~~l~l~~q~l 172 (206)
T PRK08485 107 IEKRKQKKPVKPLDLDLKKLDLKDIYEFLKE-LEKENKLSKEELKELIESLLKECVKYKIPLNEEEL 172 (206)
T ss_pred eccccccccccccccccCCCCHHHHHHHHHH-HHHcccccHHHHHHHHHHHHHHHHHHHcCccHHHH
Confidence 6 77899999999999998 67888888899999999999999999988776554
No 155
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.49 E-value=1e-12 Score=133.75 Aligned_cols=183 Identities=21% Similarity=0.254 Sum_probs=126.7
Q ss_pred cchhccHHHHHHHHHHHhcC-------CCC--cEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCCCChHHHH-
Q 017884 53 ADVAAHRDIVDTIDRLTSEN-------RLP--HLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVR- 122 (364)
Q Consensus 53 ~~~vg~~~~~~~l~~~~~~~-------~~~--~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~- 122 (364)
+.++||++++..+...+... ..| .++|+||+|+|||++|+++++.+++... .++.++.+.......+.
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~--~~~~~d~s~~~~~~~~~~ 586 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGSED--AMIRLDMSEYMEKHTVSK 586 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCcc--ceEEEEchhccccccHHH
Confidence 56899999999998887632 122 3799999999999999999999986543 34455443321111111
Q ss_pred --------------HHHHHHHhcCccccCCccceEEEEEeCCCCCCHHHHHHHHHHHHHh-----------ccCccEEEE
Q 017884 123 --------------QQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKY-----------TKNTRFALI 177 (364)
Q Consensus 123 --------------~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~-----------~~~~~~Il~ 177 (364)
..+...... .+++||++||+|.+.+..++.|+++|++. ..++.||++
T Consensus 587 l~g~~~gyvg~~~~~~l~~~~~~--------~p~~VvllDeieka~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~T 658 (821)
T CHL00095 587 LIGSPPGYVGYNEGGQLTEAVRK--------KPYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMT 658 (821)
T ss_pred hcCCCCcccCcCccchHHHHHHh--------CCCeEEEECChhhCCHHHHHHHHHHhccCceecCCCcEEecCceEEEEe
Confidence 112222211 13689999999999999999999999974 257788888
Q ss_pred eeccc-------------------------------------cCchhhhccc-eEEEecCCChHHHHHHHHHHHHH----
Q 017884 178 CNQVN-------------------------------------KIIPALQSRC-TRFRFAPLEPVHVTERLKHVIEA---- 215 (364)
Q Consensus 178 ~~~~~-------------------------------------~l~~~l~sr~-~~i~~~~~~~~~~~~~l~~~~~~---- 215 (364)
||... .+.|.+.+|+ .++.|.|++.+++.+++...+..
T Consensus 659 sn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~peflnRid~ii~F~pL~~~~l~~Iv~~~l~~l~~r 738 (821)
T CHL00095 659 SNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFRPEFLNRLDEIIVFRQLTKNDVWEIAEIMLKNLFKR 738 (821)
T ss_pred CCcchHHHHhhccccCCcccccccccccHHHHHHHHHHHHHHhcCHHHhccCCeEEEeCCCCHHHHHHHHHHHHHHHHHH
Confidence 76321 0235677888 88999999999999987766553
Q ss_pred ---c--CCCCCHHHHHHHHHHc---CCCHHHHHHHHHH
Q 017884 216 ---E--GLDVTEGGLAALVRLC---NGDMRKALNILQS 245 (364)
Q Consensus 216 ---~--~~~i~~~~~~~l~~~~---~g~~r~a~~~l~~ 245 (364)
. .+.+++++.++|++.. ..-.|.+...++.
T Consensus 739 l~~~~i~l~~~~~~~~~La~~~~~~~~GAR~l~r~i~~ 776 (821)
T CHL00095 739 LNEQGIQLEVTERIKTLLIEEGYNPLYGARPLRRAIMR 776 (821)
T ss_pred HHHCCcEEEECHHHHHHHHHhcCCCCCChhhHHHHHHH
Confidence 2 2467999999999874 1224555555543
No 156
>PRK14700 recombination factor protein RarA; Provisional
Probab=99.49 E-value=4.1e-12 Score=110.82 Aligned_cols=179 Identities=17% Similarity=0.197 Sum_probs=135.6
Q ss_pred ccEEEEe--eccccCchhhhccceEEEecCCChHHHHHHHHHHHHHc------CCCCCHHHHHHHHHHcCCCHHHHHHHH
Q 017884 172 TRFALIC--NQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAE------GLDVTEGGLAALVRLCNGDMRKALNIL 243 (364)
Q Consensus 172 ~~~Il~~--~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~------~~~i~~~~~~~l~~~~~g~~r~a~~~l 243 (364)
..+|.+| |+...+.++|+|||+++.|.+++.+++..++++.+... .+.+++++++.|+..++||.|.++|.|
T Consensus 9 i~LIGATTENP~f~vn~ALlSR~~v~~l~~L~~~di~~il~ral~~~~~~~~~~~~i~~~al~~ia~~a~GDaR~aLN~L 88 (300)
T PRK14700 9 IILIGATTENPTYYLNDALVSRLFILRLKRLSLVATQKLIEKALSQDEVLAKHKFKIDDGLYNAMHNYNEGDCRKILNLL 88 (300)
T ss_pred EEEEeecCCCccceecHhhhhhhheeeecCCCHHHHHHHHHHHHHhhhccCCcCCCcCHHHHHHHHHhcCCHHHHHHHHH
Confidence 3445544 55568999999999999999999999999999988742 367999999999999999999999999
Q ss_pred HHHHHh-c--c--cCchHHHHHhcC----------CCChHHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 017884 244 QSTHMA-S--Q--QITEEAVYLCTG----------NPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVT 308 (364)
Q Consensus 244 ~~~~~~-~--~--~i~~~~v~~~~~----------~~~~~~~~~l~~~l~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~ 308 (364)
+.+... . . .||.+.+++.+. ..+++.+..+.+++.+.|..+++.|+..|+ +.|++|.-|.+.|.
T Consensus 89 E~a~~~~~~~~~~~it~~~~~~~~~~~~~~yDk~gd~HYd~iSAf~KSiRGSDpDAAlYyLArml-~~GEDp~~IaRRLi 167 (300)
T PRK14700 89 ERMFLISTRGDEIYLNKELFDQAVGETSRDFHREGKEFYEQLSAFHKSVRGTDPDAAIFWLSVML-DNGVDPLVIARRML 167 (300)
T ss_pred HHHHhhccccCCCccCHHHHHHHHhHHHhcccCCcchhHHHHHHHHHHhhcCCccHHHHHHHHHH-HcCCCHHHHHHHHH
Confidence 985542 1 1 289999887653 346678999999999999999999999999 99999999998887
Q ss_pred HHHH-hcCCChHHHHHHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHH
Q 017884 309 MFVF-KIKMPSDVRVRLMNDLADIEYRLSFGC-NDKLQLGSIISTFT 353 (364)
Q Consensus 309 ~~~~-~~~~~~~~~~~i~~~l~~~~~~l~~~~-~~~~~l~~l~~~l~ 353 (364)
.... ..++-+.....+.....+.-.. .|. .-++.|...+..+|
T Consensus 168 i~AsEDIGlAdP~al~~a~aa~~A~~~--iG~PEa~i~La~aviyLA 212 (300)
T PRK14700 168 CIASEDIGNADPQALRVAMDAWNAYEK--LGMPEGRLVLAQAAIYLA 212 (300)
T ss_pred HHHHhhccCCCHHHHHHHHHHHHHHHH--hCChHHHHHHHHHHHHHH
Confidence 6664 3344444333333333333333 343 33566666666665
No 157
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.49 E-value=8.5e-13 Score=132.84 Aligned_cols=181 Identities=18% Similarity=0.245 Sum_probs=125.2
Q ss_pred cchhccHHHHHHHHHHHhcC--------CC-CcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCCCChHHH--
Q 017884 53 ADVAAHRDIVDTIDRLTSEN--------RL-PHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVV-- 121 (364)
Q Consensus 53 ~~~vg~~~~~~~l~~~~~~~--------~~-~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-- 121 (364)
..++||+++++.+...+... ++ .+++|+||+|+|||++|+++++.+. ..++.++.+.......+
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~-----~~~~~~d~se~~~~~~~~~ 528 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALG-----VHLERFDMSEYMEKHTVSR 528 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhc-----CCeEEEeCchhhhcccHHH
Confidence 56889999999888887632 12 2389999999999999999999983 23444444331110000
Q ss_pred -------------HHHHHHHHhcCccccCCccceEEEEEeCCCCCCHHHHHHHHHHHHHh-----------ccCccEEEE
Q 017884 122 -------------RQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKY-----------TKNTRFALI 177 (364)
Q Consensus 122 -------------~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~-----------~~~~~~Il~ 177 (364)
...+.+.... .++.||+|||++.+.++.++.|+++|++. -.++.+|++
T Consensus 529 lig~~~gyvg~~~~~~l~~~~~~--------~p~~VvllDEieka~~~~~~~Ll~~ld~g~~~d~~g~~vd~~~~iii~T 600 (731)
T TIGR02639 529 LIGAPPGYVGFEQGGLLTEAVRK--------HPHCVLLLDEIEKAHPDIYNILLQVMDYATLTDNNGRKADFRNVILIMT 600 (731)
T ss_pred HhcCCCCCcccchhhHHHHHHHh--------CCCeEEEEechhhcCHHHHHHHHHhhccCeeecCCCcccCCCCCEEEEC
Confidence 1112222221 14689999999999999999999999974 235668887
Q ss_pred eeccc-------------------------cCchhhhccc-eEEEecCCChHHHHHHHHHHHHH-------c--CCCCCH
Q 017884 178 CNQVN-------------------------KIIPALQSRC-TRFRFAPLEPVHVTERLKHVIEA-------E--GLDVTE 222 (364)
Q Consensus 178 ~~~~~-------------------------~l~~~l~sr~-~~i~~~~~~~~~~~~~l~~~~~~-------~--~~~i~~ 222 (364)
||... .+.|.+.+|+ .++.|.|++.+++.+++...+.+ . .+.+++
T Consensus 601 sn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~Rid~Vi~F~pLs~e~l~~Iv~~~L~~l~~~l~~~~~~l~i~~ 680 (731)
T TIGR02639 601 SNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRNRLDAIIHFNPLSEEVLEKIVQKFVDELSKQLNEKNIKLELTD 680 (731)
T ss_pred CCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHhcCCeEEEcCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEeCH
Confidence 75321 2456778888 68999999999999998877653 2 257799
Q ss_pred HHHHHHHHHc---CCCHHHHHHHHHHH
Q 017884 223 GGLAALVRLC---NGDMRKALNILQST 246 (364)
Q Consensus 223 ~~~~~l~~~~---~g~~r~a~~~l~~~ 246 (364)
+++++|++.. .-..|.+...++..
T Consensus 681 ~a~~~La~~~~~~~~GaR~l~r~i~~~ 707 (731)
T TIGR02639 681 DAKKYLAEKGYDEEFGARPLARVIQEE 707 (731)
T ss_pred HHHHHHHHhCCCcccCchHHHHHHHHH
Confidence 9999999864 22355555555443
No 158
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=1.2e-12 Score=119.11 Aligned_cols=160 Identities=20% Similarity=0.254 Sum_probs=114.9
Q ss_pred CCCChhh--ccCCCCCcchhccHHHHHHHHHHHh----c-------CCC--CcEEEeCCCCccHHHHHHHHHHHHcCCCC
Q 017884 39 KASPWVE--KYRPQSLADVAAHRDIVDTIDRLTS----E-------NRL--PHLLLYGPPGTGKTSTILAVARKLYGAQY 103 (364)
Q Consensus 39 ~~~~~~~--~~~p~~~~~~vg~~~~~~~l~~~~~----~-------~~~--~~lll~G~~G~GKt~la~~l~~~l~~~~~ 103 (364)
....|.- --+|.+|+.++-.+++++.+.+-+. + |.. ..+|||||||||||+++.|+|+.+
T Consensus 185 ~~~~W~~v~f~HpstF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L----- 259 (457)
T KOG0743|consen 185 KGGEWRSVGFPHPSTFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYL----- 259 (457)
T ss_pred cCCcceecCCCCCCCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhc-----
Confidence 3455532 2456789999998888876655543 2 211 129999999999999999999998
Q ss_pred CCcEEEEeCCCCCChHHHHHHHHHHHhcCccccCCccceEEEEEeCCCCCCH------------------HHHHHHHHHH
Q 017884 104 HNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTK------------------DAQFALRRVI 165 (364)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~~------------------~~~~~L~~~l 165 (364)
..++..++.+.....+.++..+... + ++.||+|+|+|.-.. -....|++.+
T Consensus 260 ~ydIydLeLt~v~~n~dLr~LL~~t----~-------~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfi 328 (457)
T KOG0743|consen 260 NYDIYDLELTEVKLDSDLRHLLLAT----P-------NKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFL 328 (457)
T ss_pred CCceEEeeeccccCcHHHHHHHHhC----C-------CCcEEEEeecccccccccccccccccccCCcceeehHHhhhhh
Confidence 4555555555444444555544332 1 478999999987731 0134588999
Q ss_pred HHhccCc----cEEEEeeccccCchhhhccc---eEEEecCCChHHHHHHHHHHHH
Q 017884 166 EKYTKNT----RFALICNQVNKIIPALQSRC---TRFRFAPLEPVHVTERLKHVIE 214 (364)
Q Consensus 166 e~~~~~~----~~Il~~~~~~~l~~~l~sr~---~~i~~~~~~~~~~~~~l~~~~~ 214 (364)
+..-+.| .+||+||..++++|+|.+++ ..+++...+.+.++....+++.
T Consensus 329 DGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~ 384 (457)
T KOG0743|consen 329 DGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLG 384 (457)
T ss_pred ccccccCCCceEEEEecCChhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcC
Confidence 8876666 58889999999999999965 5699999999999888887763
No 159
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.48 E-value=6.3e-12 Score=116.84 Aligned_cols=207 Identities=19% Similarity=0.241 Sum_probs=142.4
Q ss_pred CCCcchhccHHHHHHHHHHHhcCCC--CcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCCCChHHHHHHHHH
Q 017884 50 QSLADVAAHRDIVDTIDRLTSENRL--PHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQD 127 (364)
Q Consensus 50 ~~~~~~vg~~~~~~~l~~~~~~~~~--~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 127 (364)
..+.+++|+...+..+.+.+.+-.. .+++|+|++||||..+|++|++.- ......|+.+||... ..+.+...+..
T Consensus 138 ~~~~~liG~S~am~~l~~~i~kvA~s~a~VLI~GESGtGKElvAr~IH~~S--~R~~~PFVavNcaAi-p~~l~ESELFG 214 (464)
T COG2204 138 SLGGELVGESPAMQQLRRLIAKVAPSDASVLITGESGTGKELVARAIHQAS--PRAKGPFIAVNCAAI-PENLLESELFG 214 (464)
T ss_pred cccCCceecCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHhhC--cccCCCceeeecccC-CHHHHHHHhhc
Confidence 3577899999999999888875432 239999999999999999999873 223456788888763 23333333332
Q ss_pred HHhcCc-------cccCCccceEEEEEeCCCCCCHHHHHHHHHHHHHh-----------ccCccEEEEeecc-------c
Q 017884 128 FASTQS-------FSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKY-----------TKNTRFALICNQV-------N 182 (364)
Q Consensus 128 ~~~~~~-------~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~-----------~~~~~~Il~~~~~-------~ 182 (364)
...... ...-..++++.+++||+..|+-+.|..|++++++. +.++++|.+|+.. .
T Consensus 215 hekGAFTGA~~~r~G~fE~A~GGTLfLDEI~~mpl~~Q~kLLRvLqe~~~~rvG~~~~i~vdvRiIaaT~~dL~~~v~~G 294 (464)
T COG2204 215 HEKGAFTGAITRRIGRFEQANGGTLFLDEIGEMPLELQVKLLRVLQEREFERVGGNKPIKVDVRIIAATNRDLEEEVAAG 294 (464)
T ss_pred ccccCcCCcccccCcceeEcCCceEEeeccccCCHHHHHHHHHHHHcCeeEecCCCcccceeeEEEeecCcCHHHHHHcC
Confidence 111100 00111236889999999999999999999999963 2467788888632 2
Q ss_pred cCchhhhccceE--EEecCCCh--HHH----HHHHHHHHHHcC---CCCCHHHHHHHHHHc-CCCHHHHHHHHHHHHHhc
Q 017884 183 KIIPALQSRCTR--FRFAPLEP--VHV----TERLKHVIEAEG---LDVTEGGLAALVRLC-NGDMRKALNILQSTHMAS 250 (364)
Q Consensus 183 ~l~~~l~sr~~~--i~~~~~~~--~~~----~~~l~~~~~~~~---~~i~~~~~~~l~~~~-~g~~r~a~~~l~~~~~~~ 250 (364)
++.+.|-.|..+ +++||+.+ +++ ..++++.++..| ..+++++++.|..+. .||+|.+.|.++.+....
T Consensus 295 ~FReDLyyRLnV~~i~iPpLRER~EDIp~L~~hfl~~~~~~~~~~~~~~s~~a~~~L~~y~WPGNVREL~N~ver~~il~ 374 (464)
T COG2204 295 RFREDLYYRLNVVPLRLPPLRERKEDIPLLAEHFLKRFAAELGRPPKGFSPEALAALLAYDWPGNVRELENVVERAVILS 374 (464)
T ss_pred CcHHHHHhhhccceecCCcccccchhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCChHHHHHHHHHHHHHhcC
Confidence 455666667655 55555554 333 334444454443 478999999998875 999999999999888755
Q ss_pred c--cCchHHHH
Q 017884 251 Q--QITEEAVY 259 (364)
Q Consensus 251 ~--~i~~~~v~ 259 (364)
. .|+.+++.
T Consensus 375 ~~~~i~~~~l~ 385 (464)
T COG2204 375 EGPEIEVEDLP 385 (464)
T ss_pred Cccccchhhcc
Confidence 3 57766644
No 160
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=99.47 E-value=3.1e-12 Score=116.33 Aligned_cols=195 Identities=20% Similarity=0.270 Sum_probs=137.4
Q ss_pred cchhccHHHHHHHHHHHhc----CCCCcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCCCChHHHHHHH-HH
Q 017884 53 ADVAAHRDIVDTIDRLTSE----NRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQI-QD 127 (364)
Q Consensus 53 ~~~vg~~~~~~~l~~~~~~----~~~~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~ 127 (364)
..++|++.....++.++.. .....+++.|.||+|||.+...+...+.+.......+.+|+........+-..+ ..
T Consensus 150 ~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI~~~ 229 (529)
T KOG2227|consen 150 GTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKIFSS 229 (529)
T ss_pred CCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHHHHHH
Confidence 4588999998888888764 344459999999999999999999988877777778888887633222222111 11
Q ss_pred HHhcCcc-------------ccCCccceEEEEEeCCCCCCHHHHHHHHHHHHHhc---cCccEEEEeecc---ccCchhh
Q 017884 128 FASTQSF-------------SFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYT---KNTRFALICNQV---NKIIPAL 188 (364)
Q Consensus 128 ~~~~~~~-------------~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~---~~~~~Il~~~~~---~~l~~~l 188 (364)
+.+.... .+......-|+++||.|.|....+..|+.+++.+. ....+|.++|.. +++.+.|
T Consensus 230 ~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTdR~LprL 309 (529)
T KOG2227|consen 230 LLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTDRFLPRL 309 (529)
T ss_pred HHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHHHHhhhh
Confidence 1000000 01111135699999999999888888888888753 334445555654 4677777
Q ss_pred hccc----eEEEecCCChHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHc---CCCHHHHHHHHHHHH
Q 017884 189 QSRC----TRFRFAPLEPVHVTERLKHVIEAEGLDVT-EGGLAALVRLC---NGDMRKALNILQSTH 247 (364)
Q Consensus 189 ~sr~----~~i~~~~~~~~~~~~~l~~~~~~~~~~i~-~~~~~~l~~~~---~g~~r~a~~~l~~~~ 247 (364)
..|+ .++.|+||+.+++.+++..++..+...+. +.+++.+|+.+ .||+|+|+..++.+.
T Consensus 310 ~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~R~ai 376 (529)
T KOG2227|consen 310 NLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRKALDVCRRAI 376 (529)
T ss_pred hhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 7753 67999999999999999999987765443 45778887665 699999999987443
No 161
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=99.47 E-value=7.5e-12 Score=120.12 Aligned_cols=208 Identities=16% Similarity=0.197 Sum_probs=137.0
Q ss_pred CCCcchhccHHHHHHHHHHHhcC--CCCcEEEeCCCCccHHHHHHHHHHHHc------CCCCCCcEEEEeCCCCCChHHH
Q 017884 50 QSLADVAAHRDIVDTIDRLTSEN--RLPHLLLYGPPGTGKTSTILAVARKLY------GAQYHNMILELNASDDRGIDVV 121 (364)
Q Consensus 50 ~~~~~~vg~~~~~~~l~~~~~~~--~~~~lll~G~~G~GKt~la~~l~~~l~------~~~~~~~~~~~~~~~~~~~~~~ 121 (364)
.+|++++|+...+..+.+.+..- ...+++|+|++||||+.+|+.+.+.+. .......++.+||..... ..+
T Consensus 216 ~~f~~iiG~S~~m~~~~~~i~~~A~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~inCaal~e-~ll 294 (538)
T PRK15424 216 YVLGDLLGQSPQMEQVRQTILLYARSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAE-SLL 294 (538)
T ss_pred cchhheeeCCHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEeecccCCh-hhH
Confidence 46899999999888888887632 234599999999999999999998732 222345688888876432 223
Q ss_pred HHHHHHHHhc--------CccccCCccceEEEEEeCCCCCCHHHHHHHHHHHHHh-----------ccCccEEEEeeccc
Q 017884 122 RQQIQDFAST--------QSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKY-----------TKNTRFALICNQVN 182 (364)
Q Consensus 122 ~~~i~~~~~~--------~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~-----------~~~~~~Il~~~~~~ 182 (364)
...+...... ....+-...+++.++|||++.|+...|..|++++++. +.++++|++|+..-
T Consensus 295 eseLFG~~~gaftga~~~~~~Gl~e~A~gGTLfLdeI~~Lp~~~Q~kLl~~L~e~~~~r~G~~~~~~~dvRiIaat~~~L 374 (538)
T PRK15424 295 EAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCDL 374 (538)
T ss_pred HHHhcCCccccccCccccccCCchhccCCCEEEEcChHhCCHHHHHHHHhhhhcCeEEecCCCceeccceEEEEecCCCH
Confidence 3322211100 0000111235779999999999999999999999863 23457888775331
Q ss_pred -------cCchhhhccc--eEEEecCCCh--HHHHHHHHHHHH----HcCCCCCHHHH-------HHHHHH-cCCCHHHH
Q 017884 183 -------KIIPALQSRC--TRFRFAPLEP--VHVTERLKHVIE----AEGLDVTEGGL-------AALVRL-CNGDMRKA 239 (364)
Q Consensus 183 -------~l~~~l~sr~--~~i~~~~~~~--~~~~~~l~~~~~----~~~~~i~~~~~-------~~l~~~-~~g~~r~a 239 (364)
.+.+.+-.|. ..+++||+.+ +++..++...+. ..+..++++++ +.|..+ ++||+|.+
T Consensus 375 ~~~v~~g~Fr~dL~yrL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a~~~~~~a~~~L~~y~WPGNvREL 454 (538)
T PRK15424 375 EEDVRQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKQSLAALSAPFSAALRQGLQQCETLLLHYDWPGNVREL 454 (538)
T ss_pred HHHHhcccchHHHHHHhcCCeecCCChhhchhHHHHHHHHHHHHHHHHcCCCCCHHHHHhhHHHHHHHHhCCCCchHHHH
Confidence 2333444554 5677788765 455555544443 35667888776 445444 48999999
Q ss_pred HHHHHHHHHhc-----ccCchHHH
Q 017884 240 LNILQSTHMAS-----QQITEEAV 258 (364)
Q Consensus 240 ~~~l~~~~~~~-----~~i~~~~v 258 (364)
.+.++.++... ..|+.+++
T Consensus 455 ~nvier~~i~~~~~~~~~i~~~~l 478 (538)
T PRK15424 455 RNLMERLALFLSVEPTPDLTPQFL 478 (538)
T ss_pred HHHHHHHHHhcCCCCcCccCHHHh
Confidence 99999887653 24565554
No 162
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.47 E-value=2.7e-12 Score=131.08 Aligned_cols=185 Identities=19% Similarity=0.280 Sum_probs=131.7
Q ss_pred cchhccHHHHHHHHHHHhcCC--------C-CcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCCCChHHHHH
Q 017884 53 ADVAAHRDIVDTIDRLTSENR--------L-PHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQ 123 (364)
Q Consensus 53 ~~~vg~~~~~~~l~~~~~~~~--------~-~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (364)
..++||+.++..+...+.... + ..++|+||+|+|||++|+++++.+.+... .++.++++..........
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~--~~i~~d~s~~~~~~~~~~ 642 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDED--AMVRIDMSEYMEKHSVAR 642 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCC--cEEEEechhhcccchHHH
Confidence 568999999999988886421 1 23899999999999999999999876543 445555443211111111
Q ss_pred ---------------HHHHHHhcCccccCCccceEEEEEeCCCCCCHHHHHHHHHHHHHhc-----------cCccEEEE
Q 017884 124 ---------------QIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYT-----------KNTRFALI 177 (364)
Q Consensus 124 ---------------~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~-----------~~~~~Il~ 177 (364)
.+...... .++.||++||++.+.+..++.|+++|++.. .++.+|++
T Consensus 643 l~g~~~g~~g~~~~g~l~~~v~~--------~p~~vlllDeieka~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~T 714 (852)
T TIGR03346 643 LIGAPPGYVGYEEGGQLTEAVRR--------KPYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMT 714 (852)
T ss_pred hcCCCCCccCcccccHHHHHHHc--------CCCcEEEEeccccCCHHHHHHHHHHHhcCceecCCCeEEecCCcEEEEe
Confidence 11111111 135799999999999999999999998752 45668888
Q ss_pred eeccc-------------------------cCchhhhccc-eEEEecCCChHHHHHHHHHHHH-------Hc--CCCCCH
Q 017884 178 CNQVN-------------------------KIIPALQSRC-TRFRFAPLEPVHVTERLKHVIE-------AE--GLDVTE 222 (364)
Q Consensus 178 ~~~~~-------------------------~l~~~l~sr~-~~i~~~~~~~~~~~~~l~~~~~-------~~--~~~i~~ 222 (364)
||... .+.|.+..|+ .++.|.|++.+++.+++..... .. .+.+++
T Consensus 715 Sn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~Rid~IivF~PL~~e~l~~I~~l~L~~l~~~l~~~~~~l~i~~ 794 (852)
T TIGR03346 715 SNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLNRIDEIVVFHPLGREQIARIVEIQLGRLRKRLAERKITLELSD 794 (852)
T ss_pred CCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhcCcCeEEecCCcCHHHHHHHHHHHHHHHHHHHHHCCCeecCCH
Confidence 86421 1335666777 7899999999998887666543 22 257899
Q ss_pred HHHHHHHHHc---CCCHHHHHHHHHHHH
Q 017884 223 GGLAALVRLC---NGDMRKALNILQSTH 247 (364)
Q Consensus 223 ~~~~~l~~~~---~g~~r~a~~~l~~~~ 247 (364)
+++++|++.. .++.|.+.+.++...
T Consensus 795 ~a~~~L~~~~~~~~~gaR~L~~~i~~~i 822 (852)
T TIGR03346 795 AALDFLAEAGYDPVYGARPLKRAIQREI 822 (852)
T ss_pred HHHHHHHHhCCCCCCCchhHHHHHHHHH
Confidence 9999999873 578898888887654
No 163
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=1.2e-12 Score=124.76 Aligned_cols=203 Identities=21% Similarity=0.278 Sum_probs=132.5
Q ss_pred hccHHHHHHHHHHHh------cCCCCcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCCCChHHHHHHHHHHH
Q 017884 56 AAHRDIVDTIDRLTS------ENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFA 129 (364)
Q Consensus 56 vg~~~~~~~l~~~~~------~~~~~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 129 (364)
.|-+++++++.+++. +-..|-++|+||||+|||++++.+|+.+ +-.|+.++-...+....++..-+.+.
T Consensus 326 YGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al-----~RkfvR~sLGGvrDEAEIRGHRRTYI 400 (782)
T COG0466 326 YGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKAL-----GRKFVRISLGGVRDEAEIRGHRRTYI 400 (782)
T ss_pred cCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHh-----CCCEEEEecCccccHHHhcccccccc
Confidence 566778887777664 2233448999999999999999999998 34445554433222223322211111
Q ss_pred hcCccc-------cCCccceEEEEEeCCCCCCHH----HHHHHHHHHHHh---------------ccCccEEEEeecccc
Q 017884 130 STQSFS-------FGVKASVKLVLLDEADAMTKD----AQFALRRVIEKY---------------TKNTRFALICNQVNK 183 (364)
Q Consensus 130 ~~~~~~-------~~~~~~~~viiiDe~~~l~~~----~~~~L~~~le~~---------------~~~~~~Il~~~~~~~ 183 (364)
.++|-. .+. ..-++++||+|.|+.+ -..+|+++|+-- -+++.||.++|..+.
T Consensus 401 GamPGrIiQ~mkka~~--~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmFiaTANsl~t 478 (782)
T COG0466 401 GAMPGKIIQGMKKAGV--KNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMFIATANSLDT 478 (782)
T ss_pred ccCChHHHHHHHHhCC--cCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheEEEeecCcccc
Confidence 111100 011 3459999999999743 356777777621 145678888899999
Q ss_pred CchhhhccceEEEecCCChHHHHHHHHHHH-----HHc-----CCCCCHHHHHHHHHHc--CCCHHHHHHHHHHHHHhc-
Q 017884 184 IIPALQSRCTRFRFAPLEPVHVTERLKHVI-----EAE-----GLDVTEGGLAALVRLC--NGDMRKALNILQSTHMAS- 250 (364)
Q Consensus 184 l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~-----~~~-----~~~i~~~~~~~l~~~~--~g~~r~a~~~l~~~~~~~- 250 (364)
++.+|..|..++++..+++++=.++.++++ +.. .+.++++++..|+++. ..-+|.+-..+.+++...
T Consensus 479 IP~PLlDRMEiI~lsgYt~~EKl~IAk~~LiPk~~~~~gL~~~el~i~d~ai~~iI~~YTREAGVR~LeR~i~ki~RK~~ 558 (782)
T COG0466 479 IPAPLLDRMEVIRLSGYTEDEKLEIAKRHLIPKQLKEHGLKKGELTITDEAIKDIIRYYTREAGVRNLEREIAKICRKAA 558 (782)
T ss_pred CChHHhcceeeeeecCCChHHHHHHHHHhcchHHHHHcCCCccceeecHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHH
Confidence 999999999999999999998877766643 223 3578999999888765 223555555554443321
Q ss_pred ----------c-cCchHHHHHhcCCC
Q 017884 251 ----------Q-QITEEAVYLCTGNP 265 (364)
Q Consensus 251 ----------~-~i~~~~v~~~~~~~ 265 (364)
. .|+..++.+.++..
T Consensus 559 ~~i~~~~~k~~~~i~~~~l~~yLG~~ 584 (782)
T COG0466 559 KKILLKKEKSIVKIDEKNLKKYLGVP 584 (782)
T ss_pred HHHHhcCcccceeeCHHHHHHHhCCc
Confidence 1 46777777776653
No 164
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=2.2e-12 Score=124.89 Aligned_cols=171 Identities=20% Similarity=0.281 Sum_probs=122.5
Q ss_pred CCCcchhccHHHHHHHHHHHhc-----------C-CCC-cEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCCC
Q 017884 50 QSLADVAAHRDIVDTIDRLTSE-----------N-RLP-HLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDR 116 (364)
Q Consensus 50 ~~~~~~vg~~~~~~~l~~~~~~-----------~-~~~-~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~ 116 (364)
.+|+++.|.+.+...++..+.. + ..+ .+|||||||||||.+|++++... ...++.+..+...
T Consensus 239 v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~-----~~~fi~v~~~~l~ 313 (494)
T COG0464 239 VTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALES-----RSRFISVKGSELL 313 (494)
T ss_pred cceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhC-----CCeEEEeeCHHHh
Confidence 5789999988888877776541 1 223 38999999999999999999975 5667777665322
Q ss_pred C------hHHHHHHHHHHHhcCccccCCccceEEEEEeCCCCCCH-----------HHHHHHHHHHH--HhccCccEEEE
Q 017884 117 G------IDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTK-----------DAQFALRRVIE--KYTKNTRFALI 177 (364)
Q Consensus 117 ~------~~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~~-----------~~~~~L~~~le--~~~~~~~~Il~ 177 (364)
+ ...+++.+...... .+.+|+|||+|.+.. ...+.|+..++ +...++.+|.+
T Consensus 314 sk~vGesek~ir~~F~~A~~~---------~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~a 384 (494)
T COG0464 314 SKWVGESEKNIRELFEKARKL---------APSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAA 384 (494)
T ss_pred ccccchHHHHHHHHHHHHHcC---------CCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEec
Confidence 1 12233322222211 478999999999942 35566777775 33445667888
Q ss_pred eeccccCchhhhc--cc-eEEEecCCChHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCC
Q 017884 178 CNQVNKIIPALQS--RC-TRFRFAPLEPVHVTERLKHVIEAEGLD-VTEGGLAALVRLCNG 234 (364)
Q Consensus 178 ~~~~~~l~~~l~s--r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~-i~~~~~~~l~~~~~g 234 (364)
||.++.+++++.+ |+ ..+.+++|+..+..+++...+...+.. .++-.++.+++.+.|
T Consensus 385 TN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~ 445 (494)
T COG0464 385 TNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEG 445 (494)
T ss_pred CCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHHhcC
Confidence 8999999999999 87 779999999999999999988765553 345567777776654
No 165
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.46 E-value=4e-12 Score=115.33 Aligned_cols=211 Identities=15% Similarity=0.210 Sum_probs=128.3
Q ss_pred CcchhccHHHHHHHHHHHhcCCCCcEEEeCCCCccHHHHHHHHHHHHc-------CCCC----CC-------cE------
Q 017884 52 LADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLY-------GAQY----HN-------MI------ 107 (364)
Q Consensus 52 ~~~~vg~~~~~~~l~~~~~~~~~~~lll~G~~G~GKt~la~~l~~~l~-------~~~~----~~-------~~------ 107 (364)
|..++||++++..|.-.+-.....|++|.|++|+|||+++++++..+. ++.. .. ..
T Consensus 3 f~~ivgq~~~~~al~~~~~~~~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 82 (337)
T TIGR02030 3 FTAIVGQDEMKLALLLNVIDPKIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPEMMCEEVRIRVDSQE 82 (337)
T ss_pred ccccccHHHHHHHHHHHhcCCCCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCccccChHHhhhhhccc
Confidence 788999999999887776676677899999999999999999998762 1110 00 00
Q ss_pred -----------EEE--eCCC--CCChHHHHHHHHHHHhcCccccCCccceEEEEEeCCCCCCHHHHHHHHHHHHHhc---
Q 017884 108 -----------LEL--NASD--DRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYT--- 169 (364)
Q Consensus 108 -----------~~~--~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~--- 169 (364)
..+ +.+. ..|.-++...+..-........-...+++++++||++.+++..|..|+..|++..
T Consensus 83 ~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A~~GvL~lDEi~~L~~~~Q~~Ll~~l~~g~~~v 162 (337)
T TIGR02030 83 PLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLARANRGILYIDEVNLLEDHLVDVLLDVAASGWNVV 162 (337)
T ss_pred ccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcceeccCCEEEecChHhCCHHHHHHHHHHHHhCCeEE
Confidence 000 0000 0011111111111000000000011246899999999999999999999998642
Q ss_pred --------cCccEEEEe--eccc-cCchhhhccc-eEEEecCCCh-HHHHHHHHHHHH----------------------
Q 017884 170 --------KNTRFALIC--NQVN-KIIPALQSRC-TRFRFAPLEP-VHVTERLKHVIE---------------------- 214 (364)
Q Consensus 170 --------~~~~~Il~~--~~~~-~l~~~l~sr~-~~i~~~~~~~-~~~~~~l~~~~~---------------------- 214 (364)
..+++++++ |... .+.+.+..|+ ..+.+.++.. ++..+++.....
T Consensus 163 ~r~G~~~~~~~r~iviat~np~eg~l~~~LldRf~l~i~l~~p~~~eer~eIL~~~~~~~~~~~~~~~~~~~e~~~~~~~ 242 (337)
T TIGR02030 163 EREGISIRHPARFVLVGSGNPEEGELRPQLLDRFGLHAEIRTVRDVELRVEIVERRTEYDADPHAFCEKWQTEQEALQAK 242 (337)
T ss_pred EECCEEEEcCCCEEEEeccccccCCCCHHHHhhcceEEECCCCCCHHHHHHHHHhhhhcccCchhhhhhhhhhhhcCHHH
Confidence 123444444 3222 5778899998 5577777765 555555544211
Q ss_pred -------HcCCCCCHHHHHHHHHHc---CC-CHHHHHHHHHHHHHhc-----ccCchHHHHHhc
Q 017884 215 -------AEGLDVTEGGLAALVRLC---NG-DMRKALNILQSTHMAS-----QQITEEAVYLCT 262 (364)
Q Consensus 215 -------~~~~~i~~~~~~~l~~~~---~g-~~r~a~~~l~~~~~~~-----~~i~~~~v~~~~ 262 (364)
-..+.++++.++++++.+ +. .+|..+.++..+...+ ..++.+||..+.
T Consensus 243 I~~a~~~~~~V~v~d~~~~~i~~l~~~~~~~s~Ra~i~l~raArA~Aal~GR~~V~~dDv~~~a 306 (337)
T TIGR02030 243 IVNAQNLLPQVTIPYDVLVKVAELCAELDVDGLRGELTLNRAAKALAAFEGRTEVTVDDIRRVA 306 (337)
T ss_pred HHHHHHHhccCcCCHHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Confidence 135678888888887764 33 4788777775444322 478888887643
No 166
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.46 E-value=4.5e-12 Score=128.97 Aligned_cols=186 Identities=18% Similarity=0.266 Sum_probs=128.6
Q ss_pred CCcchhccHHHHHHHHHHHhcC-------CC--CcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCCCChHHH
Q 017884 51 SLADVAAHRDIVDTIDRLTSEN-------RL--PHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVV 121 (364)
Q Consensus 51 ~~~~~vg~~~~~~~l~~~~~~~-------~~--~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 121 (364)
-...++||+.++..+...+... .. .+++|+||+|+|||++|+++++.+.+.+. .++.++++........
T Consensus 566 l~~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~--~~i~id~se~~~~~~~ 643 (857)
T PRK10865 566 LHHRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDD--AMVRIDMSEFMEKHSV 643 (857)
T ss_pred hCCeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcCCC--cEEEEEhHHhhhhhhH
Confidence 3567899999999888887632 11 24899999999999999999999865433 3455555432111111
Q ss_pred HHH---------------HHHHHhcCccccCCccceEEEEEeCCCCCCHHHHHHHHHHHHHh-----------ccCccEE
Q 017884 122 RQQ---------------IQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKY-----------TKNTRFA 175 (364)
Q Consensus 122 ~~~---------------i~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~-----------~~~~~~I 175 (364)
... +...... ..+.+|+|||++.+.+..++.|++++++. ..++.+|
T Consensus 644 ~~LiG~~pgy~g~~~~g~l~~~v~~--------~p~~vLllDEieka~~~v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI 715 (857)
T PRK10865 644 SRLVGAPPGYVGYEEGGYLTEAVRR--------RPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVI 715 (857)
T ss_pred HHHhCCCCcccccchhHHHHHHHHh--------CCCCeEEEeehhhCCHHHHHHHHHHHhhCceecCCceEEeecccEEE
Confidence 111 1111111 13579999999999999999999999874 2345588
Q ss_pred EEeecc-------------------------ccCchhhhccc-eEEEecCCChHHHHHHHHHHHHH-------cC--CCC
Q 017884 176 LICNQV-------------------------NKIIPALQSRC-TRFRFAPLEPVHVTERLKHVIEA-------EG--LDV 220 (364)
Q Consensus 176 l~~~~~-------------------------~~l~~~l~sr~-~~i~~~~~~~~~~~~~l~~~~~~-------~~--~~i 220 (364)
++||.. ..+.|.+.+|+ .++.|.|++.+++..++...+.. .+ +.+
T Consensus 716 ~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELlnRld~iivF~PL~~edl~~Iv~~~L~~l~~rl~~~gi~l~i 795 (857)
T PRK10865 716 MTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFINRIDEVVVFHPLGEQHIASIAQIQLQRLYKRLEERGYEIHI 795 (857)
T ss_pred EeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHHhCCeeEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCcCcC
Confidence 888742 12456788898 88999999999988887766543 23 467
Q ss_pred CHHHHHHHHHHcC---CCHHHHHHHHHHH
Q 017884 221 TEGGLAALVRLCN---GDMRKALNILQST 246 (364)
Q Consensus 221 ~~~~~~~l~~~~~---g~~r~a~~~l~~~ 246 (364)
++++++.|+.+.. -..|.+.+.++..
T Consensus 796 s~~al~~L~~~gy~~~~GARpL~r~I~~~ 824 (857)
T PRK10865 796 SDEALKLLSENGYDPVYGARPLKRAIQQQ 824 (857)
T ss_pred CHHHHHHHHHcCCCccCChHHHHHHHHHH
Confidence 9999999998652 1356666666544
No 167
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=99.46 E-value=7.8e-12 Score=121.01 Aligned_cols=208 Identities=18% Similarity=0.190 Sum_probs=138.7
Q ss_pred CCCCCcchhccHHHHHHHHHHHhcC--CCCcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCCCChHHHHHHH
Q 017884 48 RPQSLADVAAHRDIVDTIDRLTSEN--RLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQI 125 (364)
Q Consensus 48 ~p~~~~~~vg~~~~~~~l~~~~~~~--~~~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i 125 (364)
...+|++++|....+..+...+... ...+++|+|++||||+++|+++...-. .....++.+||.... .+.+...+
T Consensus 199 ~~~~f~~~ig~s~~~~~~~~~~~~~A~~~~pvlI~GE~GtGK~~lA~aiH~~s~--r~~~pfv~inca~~~-~~~~e~el 275 (520)
T PRK10820 199 DDSAFSQIVAVSPKMRQVVEQARKLAMLDAPLLITGDTGTGKDLLAYACHLRSP--RGKKPFLALNCASIP-DDVVESEL 275 (520)
T ss_pred ccccccceeECCHHHHHHHHHHHHHhCCCCCEEEECCCCccHHHHHHHHHHhCC--CCCCCeEEeccccCC-HHHHHHHh
Confidence 3458999999988777776666532 234499999999999999999876532 223456788887643 22222222
Q ss_pred HHHHh-cC------ccccCCccceEEEEEeCCCCCCHHHHHHHHHHHHHh-----------ccCccEEEEeecc------
Q 017884 126 QDFAS-TQ------SFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKY-----------TKNTRFALICNQV------ 181 (364)
Q Consensus 126 ~~~~~-~~------~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~-----------~~~~~~Il~~~~~------ 181 (364)
..... .. ...+-..+.++.++|||++.|+...|..|++++++. +.++++|++|+..
T Consensus 276 FG~~~~~~~~~~~~~~g~~e~a~~GtL~LdeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~vRiI~st~~~l~~l~~ 355 (520)
T PRK10820 276 FGHAPGAYPNALEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQ 355 (520)
T ss_pred cCCCCCCcCCcccCCCChhhhcCCCEEEEeChhhCCHHHHHHHHHHHhcCCcccCCCCcceeeeeEEEEecCCCHHHHHH
Confidence 11110 00 000001124679999999999999999999999863 1345777776432
Q ss_pred -ccCchhhhccc--eEEEecCCCh--HHHHHH----HHHHHHHcC---CCCCHHHHHHHHHH-cCCCHHHHHHHHHHHHH
Q 017884 182 -NKIIPALQSRC--TRFRFAPLEP--VHVTER----LKHVIEAEG---LDVTEGGLAALVRL-CNGDMRKALNILQSTHM 248 (364)
Q Consensus 182 -~~l~~~l~sr~--~~i~~~~~~~--~~~~~~----l~~~~~~~~---~~i~~~~~~~l~~~-~~g~~r~a~~~l~~~~~ 248 (364)
..+.+.|..|. ..+.+||+.+ +++..+ +...+.+.| ..+++++++.|..+ ++||+|.+.+.++.+..
T Consensus 356 ~g~f~~dL~~rL~~~~i~lPpLreR~~Di~~L~~~fl~~~~~~~g~~~~~ls~~a~~~L~~y~WPGNvreL~nvl~~a~~ 435 (520)
T PRK10820 356 KGEFREDLYYRLNVLTLNLPPLRDRPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYGWPGNVRQLKNAIYRALT 435 (520)
T ss_pred cCCccHHHHhhcCeeEEeCCCcccChhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 13445566774 5677888876 344433 444455544 36899999999988 79999999999988776
Q ss_pred hc--ccCchHHH
Q 017884 249 AS--QQITEEAV 258 (364)
Q Consensus 249 ~~--~~i~~~~v 258 (364)
.. ..|+.+++
T Consensus 436 ~~~~~~i~~~~~ 447 (520)
T PRK10820 436 QLEGYELRPQDI 447 (520)
T ss_pred hCCCCcccHHHc
Confidence 43 36777775
No 168
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=1.6e-12 Score=124.36 Aligned_cols=174 Identities=22% Similarity=0.287 Sum_probs=116.7
Q ss_pred ccCCCCCcchhccHHHHHHHHHHHhc----------C-C-CCcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCC
Q 017884 46 KYRPQSLADVAAHRDIVDTIDRLTSE----------N-R-LPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNAS 113 (364)
Q Consensus 46 ~~~p~~~~~~vg~~~~~~~l~~~~~~----------~-~-~~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~ 113 (364)
|.--.+|+|+-|-++++..+...++- | + -..++||||||||||.+|+++|.+. ...|+.+-+.
T Consensus 665 KIPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEc-----sL~FlSVKGP 739 (953)
T KOG0736|consen 665 KIPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATEC-----SLNFLSVKGP 739 (953)
T ss_pred CCCccchhcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhc-----eeeEEeecCH
Confidence 44446899999999999999888763 2 2 2239999999999999999999996 5666666544
Q ss_pred CC------CChHHHHHHHHHHHhcCccccCCccceEEEEEeCCCCCCHH-------------HHHHHHHHHHHhc----c
Q 017884 114 DD------RGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKD-------------AQFALRRVIEKYT----K 170 (364)
Q Consensus 114 ~~------~~~~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~-------------~~~~L~~~le~~~----~ 170 (364)
.. .+...+|+.++.+... .++||++||+|.+.+. ....|+.-|+..+ .
T Consensus 740 ELLNMYVGqSE~NVR~VFerAR~A---------~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~~s~ 810 (953)
T KOG0736|consen 740 ELLNMYVGQSEENVREVFERARSA---------APCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDSSSQ 810 (953)
T ss_pred HHHHHHhcchHHHHHHHHHHhhcc---------CCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccCCCCC
Confidence 32 2233455544443322 5789999999999642 3445666666544 2
Q ss_pred CccEEEEeeccccCchhhhc--cc-eEEEecCCChHHH-HHHHHHHHHHcCCCCCHH-HHHHHHHHcCCC
Q 017884 171 NTRFALICNQVNKIIPALQS--RC-TRFRFAPLEPVHV-TERLKHVIEAEGLDVTEG-GLAALVRLCNGD 235 (364)
Q Consensus 171 ~~~~Il~~~~~~~l~~~l~s--r~-~~i~~~~~~~~~~-~~~l~~~~~~~~~~i~~~-~~~~l~~~~~g~ 235 (364)
.+.+|.+||.|+-++++|.+ |+ ..+...+.+..+- .++|+...++. .++++ .+..+++.+.-+
T Consensus 811 ~VFViGATNRPDLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkF--kLdedVdL~eiAk~cp~~ 878 (953)
T KOG0736|consen 811 DVFVIGATNRPDLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKF--KLDEDVDLVEIAKKCPPN 878 (953)
T ss_pred ceEEEecCCCccccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHc--cCCCCcCHHHHHhhCCcC
Confidence 34466678999999999988 56 5567777666544 44455444443 34433 356777776543
No 169
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=4.2e-12 Score=106.60 Aligned_cols=154 Identities=24% Similarity=0.337 Sum_probs=108.6
Q ss_pred CCcchhccHHHHHHHHHHHhc-----------C-CCC-cEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCC--
Q 017884 51 SLADVAAHRDIVDTIDRLTSE-----------N-RLP-HLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDD-- 115 (364)
Q Consensus 51 ~~~~~vg~~~~~~~l~~~~~~-----------~-~~~-~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~-- 115 (364)
+..++-|.+-.++.++..+.- | .+| .+++|||||||||.++++++++- ...|+.+.++..
T Consensus 153 sy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t-----~a~firvvgsefvq 227 (408)
T KOG0727|consen 153 SYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHT-----TAAFIRVVGSEFVQ 227 (408)
T ss_pred cccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhcc-----chheeeeccHHHHH
Confidence 678888877777777666541 1 233 39999999999999999999974 456677766541
Q ss_pred ----CChHHHHHHHHHHHhcCccccCCccceEEEEEeCCCCCCH-----------HHHHHHHHHHHH-----hccCccEE
Q 017884 116 ----RGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTK-----------DAQFALRRVIEK-----YTKNTRFA 175 (364)
Q Consensus 116 ----~~~~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~~-----------~~~~~L~~~le~-----~~~~~~~I 175 (364)
.+...+++.+.-..+ +.+.+|+|||+|.+.. +.|..|++++.. ...++.+|
T Consensus 228 kylgegprmvrdvfrlake---------napsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~~nvkvi 298 (408)
T KOG0727|consen 228 KYLGEGPRMVRDVFRLAKE---------NAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQTTNVKVI 298 (408)
T ss_pred HHhccCcHHHHHHHHHHhc---------cCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcccceEEE
Confidence 344455554333222 2467999999998852 345556555553 24578899
Q ss_pred EEeeccccCchhhhccc---eEEEecCCChHHHHHHHHHHHHHcCC
Q 017884 176 LICNQVNKIIPALQSRC---TRFRFAPLEPVHVTERLKHVIEAEGL 218 (364)
Q Consensus 176 l~~~~~~~l~~~l~sr~---~~i~~~~~~~~~~~~~l~~~~~~~~~ 218 (364)
++||..+-++|++.+-+ ..++|+-|+..+-+-.+..+..+.++
T Consensus 299 matnradtldpallrpgrldrkiefplpdrrqkrlvf~titskm~l 344 (408)
T KOG0727|consen 299 MATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNL 344 (408)
T ss_pred EecCcccccCHhhcCCccccccccCCCCchhhhhhhHHhhhhcccC
Confidence 99999999999998854 56999988887777777777666554
No 170
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]
Probab=99.45 E-value=9.3e-13 Score=131.36 Aligned_cols=203 Identities=25% Similarity=0.419 Sum_probs=156.0
Q ss_pred CCChhhccCCCCCcchhccHHHHHHHHHHHhcC------------C--CCc--EEEeCCCCccHHHHHHHHHHHHcCCCC
Q 017884 40 ASPWVEKYRPQSLADVAAHRDIVDTIDRLTSEN------------R--LPH--LLLYGPPGTGKTSTILAVARKLYGAQY 103 (364)
Q Consensus 40 ~~~~~~~~~p~~~~~~vg~~~~~~~l~~~~~~~------------~--~~~--lll~G~~G~GKt~la~~l~~~l~~~~~ 103 (364)
...|.++|+|.+..+++|.......+..|+... . ... ++++||||+|||+.++..++.+
T Consensus 307 ~~~~~~k~~p~~~k~~~~~~~~~~~~~~~l~~~k~~~~~sy~~~~~~ss~~~~~l~~G~pGigKT~~~h~~~k~~----- 381 (871)
T KOG1968|consen 307 GAGWTEKYQPTSSKALEGNASSSKKASKWLAKSKDKEKSSYKENEPDSSKKKALLLSGPPGIGKTTAAHKAAKEL----- 381 (871)
T ss_pred ccccccccccccHHhhhcccchhhhhhhHHHhhhccccccccccCcchhhHHHHHhcCCCCCCchhhHhhhhhhc-----
Confidence 578999999999999999888777777777643 1 112 4899999999999999999997
Q ss_pred CCcEEEEeCCCCCChHHHHHHHHHHHhcCccc--c-------CCccceEEEEEeCCCCCCHHH---HHHHHHHHHHhccC
Q 017884 104 HNMILELNASDDRGIDVVRQQIQDFASTQSFS--F-------GVKASVKLVLLDEADAMTKDA---QFALRRVIEKYTKN 171 (364)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~-------~~~~~~~viiiDe~~~l~~~~---~~~L~~~le~~~~~ 171 (364)
...++++|+++.++...+.+.+..+....... + .......||++||+|-+..+. ...+-.++. ...
T Consensus 382 g~~v~E~Nas~~RSk~~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~devD~~~~~dRg~v~~l~~l~~--ks~ 459 (871)
T KOG1968|consen 382 GFKVVEKNASDVRSKKELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLILMDEVDGMFGEDRGGVSKLSSLCK--KSS 459 (871)
T ss_pred ccceeecCccccccccHHHhhhhccccccchhhhhcccccccccccceeEEEEeccccccchhhhhHHHHHHHHH--hcc
Confidence 67889999988776666666665544333221 1 001134499999999998733 444555555 234
Q ss_pred ccEEEEeeccccCc-hhhhccceEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Q 017884 172 TRFALICNQVNKII-PALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMA 249 (364)
Q Consensus 172 ~~~Il~~~~~~~l~-~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~a~~~l~~~~~~ 249 (364)
..+|++||....-. .++.+-|..++|..|+...+...|..++..+++.|+++.++.+.+.++||+|..++.++.....
T Consensus 460 ~Piv~~cndr~~p~sr~~~~~~~~l~f~kP~~~~i~~ri~si~~se~~ki~~~~l~~~s~~~~~DiR~~i~~lq~~~~~ 538 (871)
T KOG1968|consen 460 RPLVCTCNDRNLPKSRALSRACSDLRFSKPSSELIRSRIMSICKSEGIKISDDVLEEISKLSGGDIRQIIMQLQFWSLS 538 (871)
T ss_pred CCeEEEecCCCCccccchhhhcceeeecCCcHHHHHhhhhhhhcccceecCcHHHHHHHHhcccCHHHHHHHHhhhhcc
Confidence 55778887655333 3555557999999999999999999999999999999999999999999999999999987543
No 171
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=99.45 E-value=3.2e-12 Score=107.16 Aligned_cols=177 Identities=23% Similarity=0.318 Sum_probs=116.8
Q ss_pred hhhccCCCCCcchhccHHHHHHHHHHHhc-------------CCCCcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEE
Q 017884 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSE-------------NRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILE 109 (364)
Q Consensus 43 ~~~~~~p~~~~~~vg~~~~~~~l~~~~~~-------------~~~~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~ 109 (364)
.+++..-.+.+-+-|-+..++.++..+.- .++..+++|||||+|||.+|++++..- .+.++.
T Consensus 137 mVeKvPDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht-----~c~fir 211 (404)
T KOG0728|consen 137 MVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHT-----DCTFIR 211 (404)
T ss_pred hhhhCCccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhc-----ceEEEE
Confidence 34443333344444467778888777752 133449999999999999999999985 556677
Q ss_pred EeCCCC------CChHHHHHHHHHHHhcCccccCCccceEEEEEeCCCCCC-----------HHHHHHHHHHHHH-----
Q 017884 110 LNASDD------RGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMT-----------KDAQFALRRVIEK----- 167 (364)
Q Consensus 110 ~~~~~~------~~~~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~-----------~~~~~~L~~~le~----- 167 (364)
++++.. .+...+++.+-- +.+..+.+|+.||+|.+. .+.|...++++..
T Consensus 212 vsgselvqk~igegsrmvrelfvm---------arehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfe 282 (404)
T KOG0728|consen 212 VSGSELVQKYIGEGSRMVRELFVM---------AREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFE 282 (404)
T ss_pred echHHHHHHHhhhhHHHHHHHHHH---------HHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccc
Confidence 765431 122223332222 222246799999999994 2345555555553
Q ss_pred hccCccEEEEeeccccCchhhhccc---eEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Q 017884 168 YTKNTRFALICNQVNKIIPALQSRC---TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNG 234 (364)
Q Consensus 168 ~~~~~~~Il~~~~~~~l~~~l~sr~---~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g 234 (364)
...+..+|++||..+-+++++.+-+ ..++|+||+++...++++-..++.+..-. -.+..+++...|
T Consensus 283 atknikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rg-i~l~kiaekm~g 351 (404)
T KOG0728|consen 283 ATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRG-INLRKIAEKMPG 351 (404)
T ss_pred cccceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhcc-cCHHHHHHhCCC
Confidence 2457789999999999999998855 45999999999999998877665433111 124556666544
No 172
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=99.45 E-value=4.8e-12 Score=115.27 Aligned_cols=200 Identities=16% Similarity=0.160 Sum_probs=131.2
Q ss_pred hhccHHHHHHHHHHHhcC--CCCcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCCCChHHHHHHHHHHHh--
Q 017884 55 VAAHRDIVDTIDRLTSEN--RLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFAS-- 130 (364)
Q Consensus 55 ~vg~~~~~~~l~~~~~~~--~~~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-- 130 (364)
++|+...+..+.+.+..- ...+++|+|++||||+++|++++..-. .....++.+||.... .+.+...+.....
T Consensus 1 liG~S~~m~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~~s~--r~~~pfv~vnc~~~~-~~~l~~~lfG~~~g~ 77 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYLSK--RWQGPLVKLNCAALS-ENLLDSELFGHEAGA 77 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHhcC--ccCCCeEEEeCCCCC-hHHHHHHHhcccccc
Confidence 356666666655555432 223499999999999999999987642 234567788887542 2222222211100
Q ss_pred ---c--CccccCCccceEEEEEeCCCCCCHHHHHHHHHHHHHhc-----------cCccEEEEeecc-------ccCchh
Q 017884 131 ---T--QSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYT-----------KNTRFALICNQV-------NKIIPA 187 (364)
Q Consensus 131 ---~--~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~-----------~~~~~Il~~~~~-------~~l~~~ 187 (364)
. ....+-....+++++|||++.|+...|..|++++++.. .++++|++++.. ..+.+.
T Consensus 78 ~~ga~~~~~G~~~~a~gGtL~Ldei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~at~~~l~~~~~~g~fr~d 157 (329)
T TIGR02974 78 FTGAQKRHQGRFERADGGTLFLDELATASLLVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNADLPALAAEGRFRAD 157 (329)
T ss_pred ccCcccccCCchhhCCCCEEEeCChHhCCHHHHHHHHHHHHcCcEEecCCCceeccceEEEEechhhHHHHhhcCchHHH
Confidence 0 00001112357899999999999999999999998642 456788887532 234566
Q ss_pred hhccc--eEEEecCCCh--HHHHHHHHHH----HHHcC----CCCCHHHHHHHHHHc-CCCHHHHHHHHHHHHHhc--cc
Q 017884 188 LQSRC--TRFRFAPLEP--VHVTERLKHV----IEAEG----LDVTEGGLAALVRLC-NGDMRKALNILQSTHMAS--QQ 252 (364)
Q Consensus 188 l~sr~--~~i~~~~~~~--~~~~~~l~~~----~~~~~----~~i~~~~~~~l~~~~-~g~~r~a~~~l~~~~~~~--~~ 252 (364)
|..|+ ..+.+||+.+ +++..++... +.+.+ ..+++++++.|..+. .||+|.+.+.++.++... ..
T Consensus 158 L~~rl~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~ls~~a~~~L~~y~WPGNvrEL~n~i~~~~~~~~~~~ 237 (329)
T TIGR02974 158 LLDRLAFDVITLPPLRERQEDIMLLAEHFAIRMARELGLPLFPGFTPQAREQLLEYHWPGNVRELKNVVERSVYRHGLEE 237 (329)
T ss_pred HHHHhcchhcCCCchhhhhhhHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHhCCCCchHHHHHHHHHHHHHhCCCCc
Confidence 77776 4578888874 5555554443 33333 468999999999886 999999999998887654 34
Q ss_pred CchHH
Q 017884 253 ITEEA 257 (364)
Q Consensus 253 i~~~~ 257 (364)
++.++
T Consensus 238 ~~~~~ 242 (329)
T TIGR02974 238 APIDE 242 (329)
T ss_pred cchhh
Confidence 54444
No 173
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.45 E-value=3.3e-12 Score=128.96 Aligned_cols=176 Identities=20% Similarity=0.292 Sum_probs=121.1
Q ss_pred CCCCCcchhccHHHHHHHHHHHhc-----------C--CCCcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCC
Q 017884 48 RPQSLADVAAHRDIVDTIDRLTSE-----------N--RLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASD 114 (364)
Q Consensus 48 ~p~~~~~~vg~~~~~~~l~~~~~~-----------~--~~~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~ 114 (364)
...+|+++.|.+..++.++..+.. + ...+++||||||+|||++++++++.+ ...++.+++..
T Consensus 173 ~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~-----~~~~i~i~~~~ 247 (733)
T TIGR01243 173 PKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEA-----GAYFISINGPE 247 (733)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHh-----CCeEEEEecHH
Confidence 346899999999999998887742 1 12348999999999999999999987 34456666532
Q ss_pred C----CC--hHHHHHHHHHHHhcCccccCCccceEEEEEeCCCCCCH-----------HHHHHHHHHHHHhccC--ccEE
Q 017884 115 D----RG--IDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTK-----------DAQFALRRVIEKYTKN--TRFA 175 (364)
Q Consensus 115 ~----~~--~~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~~-----------~~~~~L~~~le~~~~~--~~~I 175 (364)
. .+ ...++..+...... .+.+|+|||+|.+.. ..++.|+..|+..... +.+|
T Consensus 248 i~~~~~g~~~~~l~~lf~~a~~~---------~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~vivI 318 (733)
T TIGR01243 248 IMSKYYGESEERLREIFKEAEEN---------APSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVIVI 318 (733)
T ss_pred HhcccccHHHHHHHHHHHHHHhc---------CCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEEEE
Confidence 1 11 11223322222211 357999999998852 3456788888765443 3455
Q ss_pred EEeeccccCchhhhc--cc-eEEEecCCChHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHcCCCHHHH
Q 017884 176 LICNQVNKIIPALQS--RC-TRFRFAPLEPVHVTERLKHVIEAEGLDVT-EGGLAALVRLCNGDMRKA 239 (364)
Q Consensus 176 l~~~~~~~l~~~l~s--r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~i~-~~~~~~l~~~~~g~~r~a 239 (364)
.++|.+..+++.+++ |+ ..+.++.|+.++..+++..... +..+. +..++.+++.+.|-...-
T Consensus 319 ~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~--~~~l~~d~~l~~la~~t~G~~gad 384 (733)
T TIGR01243 319 GATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTR--NMPLAEDVDLDKLAEVTHGFVGAD 384 (733)
T ss_pred eecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhc--CCCCccccCHHHHHHhCCCCCHHH
Confidence 577888889999887 55 6789999999999999986554 33343 345788888887754443
No 174
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=8.5e-13 Score=116.76 Aligned_cols=184 Identities=21% Similarity=0.323 Sum_probs=121.2
Q ss_pred CCCcchhccHHHHHHHHHHHh----------cC---CCC-cEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCC
Q 017884 50 QSLADVAAHRDIVDTIDRLTS----------EN---RLP-HLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDD 115 (364)
Q Consensus 50 ~~~~~~vg~~~~~~~l~~~~~----------~~---~~~-~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~ 115 (364)
.+|+|+-|-+.+++.++..+- .+ +.+ .+++|||||||||.+|++++++. ...++.+..+..
T Consensus 89 v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akea-----ga~fInv~~s~l 163 (386)
T KOG0737|consen 89 VSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEA-----GANFINVSVSNL 163 (386)
T ss_pred eehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHc-----CCCcceeecccc
Confidence 379999999999999888763 11 222 38999999999999999999997 344455544432
Q ss_pred CC-----hHHHHHHHHHHHhcCccccCCccceEEEEEeCCCCCCHH-------HH----HHHHHHHHHhc--cC--ccEE
Q 017884 116 RG-----IDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKD-------AQ----FALRRVIEKYT--KN--TRFA 175 (364)
Q Consensus 116 ~~-----~~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~-------~~----~~L~~~le~~~--~~--~~~I 175 (364)
.+ .......+..++ ..-.+.+|+|||++.+... +. +.|.-.=+... .+ +.++
T Consensus 164 t~KWfgE~eKlv~AvFslA--------sKl~P~iIFIDEvds~L~~R~s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVl 235 (386)
T KOG0737|consen 164 TSKWFGEAQKLVKAVFSLA--------SKLQPSIIFIDEVDSFLGQRRSTDHEATAMMKNEFMALWDGLSSKDSERVLVL 235 (386)
T ss_pred chhhHHHHHHHHHHHHhhh--------hhcCcceeehhhHHHHHhhcccchHHHHHHHHHHHHHHhccccCCCCceEEEE
Confidence 21 011111222222 2225789999999998621 11 11111111111 12 2334
Q ss_pred EEeeccccCchhhhccc-eEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 017884 176 LICNQVNKIIPALQSRC-TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTH 247 (364)
Q Consensus 176 l~~~~~~~l~~~l~sr~-~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~a~~~l~~~~ 247 (364)
.+||.+..+++++.+|. .++++.-|+..+..++++-+++.+++. ++-.+..++..+.|--+.-+.++...+
T Consensus 236 gATNRP~DlDeAiiRR~p~rf~V~lP~~~qR~kILkviLk~e~~e-~~vD~~~iA~~t~GySGSDLkelC~~A 307 (386)
T KOG0737|consen 236 GATNRPFDLDEAIIRRLPRRFHVGLPDAEQRRKILKVILKKEKLE-DDVDLDEIAQMTEGYSGSDLKELCRLA 307 (386)
T ss_pred eCCCCCccHHHHHHHhCcceeeeCCCchhhHHHHHHHHhcccccC-cccCHHHHHHhcCCCcHHHHHHHHHHH
Confidence 45699999999999995 889999999999999999999988765 344578888888775555444444433
No 175
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.44 E-value=2.1e-12 Score=120.30 Aligned_cols=187 Identities=20% Similarity=0.265 Sum_probs=113.1
Q ss_pred chhccHHHHHHHHHHHhc-------C---------CCCcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCCCC
Q 017884 54 DVAAHRDIVDTIDRLTSE-------N---------RLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRG 117 (364)
Q Consensus 54 ~~vg~~~~~~~l~~~~~~-------~---------~~~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~ 117 (364)
.++||+.+++.+...+.+ + ...+++|+||||+|||++|+.+++.+. ..++.++++....
T Consensus 72 ~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~-----~pf~~id~~~l~~ 146 (412)
T PRK05342 72 YVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILD-----VPFAIADATTLTE 146 (412)
T ss_pred HeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhC-----CCceecchhhccc
Confidence 479999999988655421 0 124699999999999999999999873 3344444432111
Q ss_pred ----hHHHHHHHHHHHhcCccccCCccceEEEEEeCCCCCCH--------------HHHHHHHHHHHHhc----------
Q 017884 118 ----IDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTK--------------DAQFALRRVIEKYT---------- 169 (364)
Q Consensus 118 ----~~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~~--------------~~~~~L~~~le~~~---------- 169 (364)
.......+........... ....+++|+|||+|.+.. ..|++|+++|+...
T Consensus 147 ~gyvG~d~e~~l~~l~~~~~~~~-~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Leg~~~~v~~~gg~~ 225 (412)
T PRK05342 147 AGYVGEDVENILLKLLQAADYDV-EKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRK 225 (412)
T ss_pred CCcccchHHHHHHHHHHhccccH-HHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHhcCeEEeCCCCCcC
Confidence 0112222222222111101 112478999999999975 37899999998421
Q ss_pred ---cCccEEEEeec------------------------------c--------c--------------cCchhhhccc-e
Q 017884 170 ---KNTRFALICNQ------------------------------V--------N--------------KIIPALQSRC-T 193 (364)
Q Consensus 170 ---~~~~~Il~~~~------------------------------~--------~--------------~l~~~l~sr~-~ 193 (364)
.++.+|.++|- . . .+.|.+..|. .
T Consensus 226 ~~~~~~~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEflgRld~ 305 (412)
T PRK05342 226 HPQQEFIQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKFGLIPEFIGRLPV 305 (412)
T ss_pred cCCCCeEEeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHHHHhhhHHHhCCCCe
Confidence 01112222111 0 0 1355666776 6
Q ss_pred EEEecCCChHHHHHHHHH----HH-------HHcCC--CCCHHHHHHHHHHc---CCCHHHHHHHHHHH
Q 017884 194 RFRFAPLEPVHVTERLKH----VI-------EAEGL--DVTEGGLAALVRLC---NGDMRKALNILQST 246 (364)
Q Consensus 194 ~i~~~~~~~~~~~~~l~~----~~-------~~~~~--~i~~~~~~~l~~~~---~g~~r~a~~~l~~~ 246 (364)
++.|.+++.+++.+++.. .. ...++ .++++++++|++.+ ..-.|.+...++..
T Consensus 306 iv~f~~L~~~~L~~Il~~~~~~l~~q~~~~l~~~~i~L~~t~~al~~Ia~~~~~~~~GAR~Lrriie~~ 374 (412)
T PRK05342 306 VATLEELDEEALVRILTEPKNALVKQYQKLFEMDGVELEFTDEALEAIAKKAIERKTGARGLRSILEEI 374 (412)
T ss_pred eeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEECHHHHHHHHHhCCCCCCCCchHHHHHHHH
Confidence 789999999999988872 22 23343 57999999999874 12244444444443
No 176
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.44 E-value=5.3e-12 Score=114.44 Aligned_cols=211 Identities=12% Similarity=0.178 Sum_probs=131.3
Q ss_pred CCcchhccHHHHHHHHHHHhcCCCCcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCC----------------
Q 017884 51 SLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASD---------------- 114 (364)
Q Consensus 51 ~~~~~vg~~~~~~~l~~~~~~~~~~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~---------------- 114 (364)
.|.+++||++.+..|...+.+....+++|.|++|+|||++++.+++.+.+...-... .+++..
T Consensus 15 pf~~ivGq~~~k~al~~~~~~p~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~-pf~~~p~~p~~~~~~~~~~~~~ 93 (350)
T CHL00081 15 PFTAIVGQEEMKLALILNVIDPKIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDD-PFNSHPSDPELMSDEVREAIQN 93 (350)
T ss_pred CHHHHhChHHHHHHHHHhccCCCCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCC-CCCCCCCChhhhchhhhhhhcc
Confidence 699999999999999999888888889999999999999999998887532200000 000000
Q ss_pred ------------------CCChHH------HHHHHHHHHhcCccccCCccceEEEEEeCCCCCCHHHHHHHHHHHHHhc-
Q 017884 115 ------------------DRGIDV------VRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYT- 169 (364)
Q Consensus 115 ------------------~~~~~~------~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~- 169 (364)
....+. +...+...........-...+++++++||++.+++..|..|++.|++..
T Consensus 94 ~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL~~~~Q~~LLeam~e~~~ 173 (350)
T CHL00081 94 GETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDILLDSAASGWN 173 (350)
T ss_pred cccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhCCHHHHHHHHHHHHhCCe
Confidence 000000 0111111000000000012357899999999999999999999998621
Q ss_pred ----------cCccEEEEe--eccc-cCchhhhccc-eEEEecCCCh-HHHHHHHHHHHH--------------------
Q 017884 170 ----------KNTRFALIC--NQVN-KIIPALQSRC-TRFRFAPLEP-VHVTERLKHVIE-------------------- 214 (364)
Q Consensus 170 ----------~~~~~Il~~--~~~~-~l~~~l~sr~-~~i~~~~~~~-~~~~~~l~~~~~-------------------- 214 (364)
..++|++++ |... .+.+.+..|+ ..+.+..++. +...+++.+...
T Consensus 174 ~ier~G~s~~~p~rfiviaT~np~eg~l~~~LldRf~l~i~l~~~~~~~~e~~il~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (350)
T CHL00081 174 TVEREGISIRHPARFVLVGSGNPEEGELRPQLLDRFGMHAEIRTVKDPELRVKIVEQRTSFDKNPQEFREKYEESQEELR 253 (350)
T ss_pred EEeeCCeeeecCCCEEEEeccCcccCCCCHHHHHHhCceeecCCCCChHHHHHHHHhhhccccChhhhhhhhccccccCH
Confidence 123455554 3222 5788888997 5677777763 544444443211
Q ss_pred ---------HcCCCCCHHHHHHHHHHc---C-CCHHHHHHHHHHHHHhc-----ccCchHHHHHhc
Q 017884 215 ---------AEGLDVTEGGLAALVRLC---N-GDMRKALNILQSTHMAS-----QQITEEAVYLCT 262 (364)
Q Consensus 215 ---------~~~~~i~~~~~~~l~~~~---~-g~~r~a~~~l~~~~~~~-----~~i~~~~v~~~~ 262 (364)
-..+.++++.++++++.+ + -.+|..+.+++.+...+ ..++.+||..+.
T Consensus 254 ~~I~~ar~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~l~raArA~Aal~GR~~V~pdDv~~~a 319 (350)
T CHL00081 254 SKIVAAQNLLPKVEIDYDLRVKISQICSELDVDGLRGDIVTNRAAKALAAFEGRTEVTPKDIFKVI 319 (350)
T ss_pred HHHHHHHHhcCCCccCHHHHHHHHHHHHHHCCCCChHHHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Confidence 125678888888888775 2 25888777775444322 477888876654
No 177
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=2.3e-12 Score=108.64 Aligned_cols=168 Identities=20% Similarity=0.347 Sum_probs=111.6
Q ss_pred CCcchhccHHHHHHHHHHHh-----------cC-CCCc-EEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCC---
Q 017884 51 SLADVAAHRDIVDTIDRLTS-----------EN-RLPH-LLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASD--- 114 (364)
Q Consensus 51 ~~~~~vg~~~~~~~l~~~~~-----------~~-~~~~-lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~--- 114 (364)
..+++-|-+..++.|...+- -| ++|. +++|||||+|||.+|++++..-. ..|+.+.+..
T Consensus 169 ~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~-----aTFLKLAgPQLVQ 243 (424)
T KOG0652|consen 169 QYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTN-----ATFLKLAGPQLVQ 243 (424)
T ss_pred cccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhcc-----chHHHhcchHHHh
Confidence 56778888888888877653 11 2333 99999999999999999998742 2222222211
Q ss_pred ---CCChHHHHHHHHHHHhcCccccCCccceEEEEEeCCCCCCH-----------HHHHHHHHHHH---Hhc--cCccEE
Q 017884 115 ---DRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTK-----------DAQFALRRVIE---KYT--KNTRFA 175 (364)
Q Consensus 115 ---~~~~~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~~-----------~~~~~L~~~le---~~~--~~~~~I 175 (364)
..+...+++.+. ++.+..+.+|+|||+|.+.. +.|..++.++. .++ ..+.+|
T Consensus 244 MfIGdGAkLVRDAFa---------LAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~~~vKvi 314 (424)
T KOG0652|consen 244 MFIGDGAKLVRDAFA---------LAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDDRVKVI 314 (424)
T ss_pred hhhcchHHHHHHHHH---------HhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCCccceEEE
Confidence 112233333222 22333578999999999842 34555555554 333 346688
Q ss_pred EEeeccccCchhhhccc---eEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Q 017884 176 LICNQVNKIIPALQSRC---TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCN 233 (364)
Q Consensus 176 l~~~~~~~l~~~l~sr~---~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~ 233 (364)
.+||..+-++|++.+.+ +.++|+.|+++...++++-..++.++. ++-..+.|++.+.
T Consensus 315 AATNRvDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~-~DvNfeELaRsTd 374 (424)
T KOG0652|consen 315 AATNRVDILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVS-DDVNFEELARSTD 374 (424)
T ss_pred eecccccccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCC-CCCCHHHHhhccc
Confidence 88999999999987754 569999999998888888777766543 2334677777664
No 178
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=99.44 E-value=1.5e-11 Score=122.72 Aligned_cols=208 Identities=13% Similarity=0.140 Sum_probs=137.4
Q ss_pred CCCcchhccHHHHHHHHHHHhcC--CCCcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCCCChHHHHHHHHH
Q 017884 50 QSLADVAAHRDIVDTIDRLTSEN--RLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQD 127 (364)
Q Consensus 50 ~~~~~~vg~~~~~~~l~~~~~~~--~~~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 127 (364)
.+|++++|....+..+...+... ...+++|+|++|+||+++|+++++.... ....++.+|+..... +.+...+..
T Consensus 322 ~~~~~l~g~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~~A~~ih~~s~r--~~~pfv~vnc~~~~~-~~~~~elfg 398 (638)
T PRK11388 322 HTFDHMPQDSPQMRRLIHFGRQAAKSSFPVLLCGEEGVGKALLAQAIHNESER--AAGPYIAVNCQLYPD-EALAEEFLG 398 (638)
T ss_pred ccccceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCcCHHHHHHHHHHhCCc--cCCCeEEEECCCCCh-HHHHHHhcC
Confidence 36999999888887766666532 2234999999999999999999987432 234677788876432 222222211
Q ss_pred HH-hcCc---cccCCccceEEEEEeCCCCCCHHHHHHHHHHHHHhc-----------cCccEEEEeecc-------ccCc
Q 017884 128 FA-STQS---FSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYT-----------KNTRFALICNQV-------NKII 185 (364)
Q Consensus 128 ~~-~~~~---~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~-----------~~~~~Il~~~~~-------~~l~ 185 (364)
.. .... ...-..+.+++++|||++.|+...|..|++++++.. .++++|++|+.. ..+.
T Consensus 399 ~~~~~~~~~~~g~~~~a~~GtL~ldei~~l~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~t~~~l~~~~~~~~f~ 478 (638)
T PRK11388 399 SDRTDSENGRLSKFELAHGGTLFLEKVEYLSPELQSALLQVLKTGVITRLDSRRLIPVDVRVIATTTADLAMLVEQNRFS 478 (638)
T ss_pred CCCcCccCCCCCceeECCCCEEEEcChhhCCHHHHHHHHHHHhcCcEEeCCCCceEEeeEEEEEeccCCHHHHHhcCCCh
Confidence 11 0000 000011257799999999999999999999998642 246677777532 1333
Q ss_pred hhhhccc--eEEEecCCChH--HHHHHHHHHHH----Hc--CCCCCHHHHHHHHHHc-CCCHHHHHHHHHHHHHhc--cc
Q 017884 186 PALQSRC--TRFRFAPLEPV--HVTERLKHVIE----AE--GLDVTEGGLAALVRLC-NGDMRKALNILQSTHMAS--QQ 252 (364)
Q Consensus 186 ~~l~sr~--~~i~~~~~~~~--~~~~~l~~~~~----~~--~~~i~~~~~~~l~~~~-~g~~r~a~~~l~~~~~~~--~~ 252 (364)
+.|-.|. ..+.+||+.+. ++..++...+. +. .+.+++++++.|..+. +||+|.+.+.++.+.... ..
T Consensus 479 ~dL~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~s~~a~~~L~~y~WPGNvreL~~~l~~~~~~~~~~~ 558 (638)
T PRK11388 479 RQLYYALHAFEITIPPLRMRREDIPALVNNKLRSLEKRFSTRLKIDDDALARLVSYRWPGNDFELRSVIENLALSSDNGR 558 (638)
T ss_pred HHHhhhhceeEEeCCChhhhhhHHHHHHHHHHHHHHHHhCCCCCcCHHHHHHHHcCCCCChHHHHHHHHHHHHHhCCCCe
Confidence 4444453 45777887763 45444444433 22 3568999999999887 999999999999876543 36
Q ss_pred CchHHHHH
Q 017884 253 ITEEAVYL 260 (364)
Q Consensus 253 i~~~~v~~ 260 (364)
|+.+++..
T Consensus 559 i~~~~lp~ 566 (638)
T PRK11388 559 IRLSDLPE 566 (638)
T ss_pred ecHHHCch
Confidence 77777644
No 179
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.43 E-value=2.9e-12 Score=133.59 Aligned_cols=123 Identities=13% Similarity=0.114 Sum_probs=83.0
Q ss_pred ceEEEEEeCCCCCCHH-----HHHHHHHHHHHh-----ccCccEEEEeeccccCchhhhc--cc-eEEEecCCChHHHHH
Q 017884 141 SVKLVLLDEADAMTKD-----AQFALRRVIEKY-----TKNTRFALICNQVNKIIPALQS--RC-TRFRFAPLEPVHVTE 207 (364)
Q Consensus 141 ~~~viiiDe~~~l~~~-----~~~~L~~~le~~-----~~~~~~Il~~~~~~~l~~~l~s--r~-~~i~~~~~~~~~~~~ 207 (364)
.++||+|||+|.+... ....|+..|+.. ..++.+|.+||.++.++|+|.+ |+ ..+.++.|+..+..+
T Consensus 1732 SPCIIFIDEIDaL~~~ds~~ltL~qLLneLDg~~~~~s~~~VIVIAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~k 1811 (2281)
T CHL00206 1732 SPCIIWIPNIHDLNVNESNYLSLGLLVNSLSRDCERCSTRNILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRK 1811 (2281)
T ss_pred CCeEEEEEchhhcCCCccceehHHHHHHHhccccccCCCCCEEEEEeCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHH
Confidence 4789999999999743 245677777643 2345677788999999999998 66 678888888877777
Q ss_pred HHHHHHHHcCCCCCHH--HHHHHHHHcCC----CHHHHHHHHHHHHHhc--ccCchHHHHHhcC
Q 017884 208 RLKHVIEAEGLDVTEG--GLAALVRLCNG----DMRKALNILQSTHMAS--QQITEEAVYLCTG 263 (364)
Q Consensus 208 ~l~~~~~~~~~~i~~~--~~~~l~~~~~g----~~r~a~~~l~~~~~~~--~~i~~~~v~~~~~ 263 (364)
++.......++.+.++ .++.+++.+.| |+..+++++-..+... ..|+.+++..++.
T Consensus 1812 iL~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGADLanLvNEAaliAirq~ks~Id~~~I~~Al~ 1875 (2281)
T CHL00206 1812 HFFTLSYTRGFHLEKKMFHTNGFGSITMGSNARDLVALTNEALSISITQKKSIIDTNTIRSALH 1875 (2281)
T ss_pred HHHHHHhhcCCCCCcccccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Confidence 7665445556666543 36788888855 3444444333332222 4678887766653
No 180
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=99.43 E-value=1.8e-11 Score=117.57 Aligned_cols=208 Identities=17% Similarity=0.184 Sum_probs=139.8
Q ss_pred CCCcchhccHHHHHHHHHHHhcC--CCCcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCCCChHHHHHHHHH
Q 017884 50 QSLADVAAHRDIVDTIDRLTSEN--RLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQD 127 (364)
Q Consensus 50 ~~~~~~vg~~~~~~~l~~~~~~~--~~~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 127 (364)
.+|++++|....+..+.+.+..- ...+++|+|++||||+.+|+.++..-. .....++.+||..... ..+...+..
T Consensus 209 ~~f~~iiG~S~~m~~~~~~i~~~A~~~~pVLI~GE~GTGKe~lA~~IH~~S~--r~~~pfv~inC~~l~e-~lleseLFG 285 (526)
T TIGR02329 209 YRLDDLLGASAPMEQVRALVRLYARSDATVLILGESGTGKELVAQAIHQLSG--RRDFPFVAINCGAIAE-SLLEAELFG 285 (526)
T ss_pred cchhheeeCCHHHHHHHHHHHHHhCCCCcEEEECCCCcCHHHHHHHHHHhcC--cCCCCEEEeccccCCh-hHHHHHhcC
Confidence 56899999999888888887532 234599999999999999999987632 2345677888876432 222222221
Q ss_pred HHhc--------CccccCCccceEEEEEeCCCCCCHHHHHHHHHHHHHhc-----------cCccEEEEeeccc------
Q 017884 128 FAST--------QSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYT-----------KNTRFALICNQVN------ 182 (364)
Q Consensus 128 ~~~~--------~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~-----------~~~~~Il~~~~~~------ 182 (364)
.... ....+-...+++.++|||++.|+...|..|++++++.. .++++|++++..-
T Consensus 286 ~~~gaftga~~~~~~Gl~e~A~gGTLfLdeI~~Lp~~~Q~~Ll~~L~~~~~~r~g~~~~~~~dvRiIaat~~~l~~~v~~ 365 (526)
T TIGR02329 286 YEEGAFTGARRGGRTGLIEAAHRGTLFLDEIGEMPLPLQTRLLRVLEEREVVRVGGTEPVPVDVRVVAATHCALTTAVQQ 365 (526)
T ss_pred CcccccccccccccccchhhcCCceEEecChHhCCHHHHHHHHHHHhcCcEEecCCCceeeecceEEeccCCCHHHHhhh
Confidence 1100 00001112357899999999999999999999998642 2457888775432
Q ss_pred -cCchhhhccc--eEEEecCCCh--HHHHHHHHH----HHHHcCCCCCHHHHHH-------HHHH-cCCCHHHHHHHHHH
Q 017884 183 -KIIPALQSRC--TRFRFAPLEP--VHVTERLKH----VIEAEGLDVTEGGLAA-------LVRL-CNGDMRKALNILQS 245 (364)
Q Consensus 183 -~l~~~l~sr~--~~i~~~~~~~--~~~~~~l~~----~~~~~~~~i~~~~~~~-------l~~~-~~g~~r~a~~~l~~ 245 (364)
.+.+.+-.|. ..+.+||+.+ +++..++.. .+...++.+++++++. |..+ ++||+|.+.+.++.
T Consensus 366 g~fr~dL~~rL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a~~~~~~~~~~L~~y~WPGNvrEL~nvier 445 (526)
T TIGR02329 366 GRFRRDLFYRLSILRIALPPLRERPGDILPLAAEYLVQAAAALRLPDSEAAAQVLAGVADPLQRYPWPGNVRELRNLVER 445 (526)
T ss_pred cchhHHHHHhcCCcEEeCCCchhchhHHHHHHHHHHHHHHHHcCCCCCHHHHHHhHHHHHHHHhCCCCchHHHHHHHHHH
Confidence 2333444453 5678888876 455444444 3444466789999887 6665 49999999999998
Q ss_pred HHHhc-----ccCchHHHHH
Q 017884 246 THMAS-----QQITEEAVYL 260 (364)
Q Consensus 246 ~~~~~-----~~i~~~~v~~ 260 (364)
++... ..|+.+++..
T Consensus 446 ~~i~~~~~~~~~I~~~~l~~ 465 (526)
T TIGR02329 446 LALELSAMPAGALTPDVLRA 465 (526)
T ss_pred HHHhcccCCCCccCHHHhhh
Confidence 87642 4678777653
No 181
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.43 E-value=2.6e-12 Score=103.25 Aligned_cols=138 Identities=30% Similarity=0.358 Sum_probs=93.5
Q ss_pred hccHHHHHHHHHHHhcCCCCcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCCCChHHHHHHHH---HHHhcC
Q 017884 56 AAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQ---DFASTQ 132 (364)
Q Consensus 56 vg~~~~~~~l~~~~~~~~~~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~---~~~~~~ 132 (364)
+|++..+..+...+......+++++||+|+|||++++.+++.+... ...++.+++.............. ......
T Consensus 1 ~~~~~~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (151)
T cd00009 1 VGQEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELFRP--GAPFLYLNASDLLEGLVVAELFGHFLVRLLFE 78 (151)
T ss_pred CchHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhhcC--CCCeEEEehhhhhhhhHHHHHhhhhhHhHHHH
Confidence 3667788888888877656679999999999999999999998533 34455555544322222111111 000000
Q ss_pred ccccCCccceEEEEEeCCCCCCHHHHHHHHHHHHHhc------cCccEEEEeeccc--cCchhhhccc-eEEEec
Q 017884 133 SFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYT------KNTRFALICNQVN--KIIPALQSRC-TRFRFA 198 (364)
Q Consensus 133 ~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~------~~~~~Il~~~~~~--~l~~~l~sr~-~~i~~~ 198 (364)
......+.++++||++.+.......+...++... ..+.+|++++... .+.+.+.+|+ ..+.++
T Consensus 79 ---~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~r~~~~i~~~ 150 (151)
T cd00009 79 ---LAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLDRALYDRLDIRIVIP 150 (151)
T ss_pred ---hhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccccCCcChhHHhhhccEeecC
Confidence 0111147899999999998778888888888763 5677888887665 6778888998 666665
No 182
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=99.43 E-value=6.8e-12 Score=114.41 Aligned_cols=197 Identities=18% Similarity=0.164 Sum_probs=131.9
Q ss_pred CCcchhccHHHHHHHHHHHhcC--CCCcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCCCChHHHHHHHHHH
Q 017884 51 SLADVAAHRDIVDTIDRLTSEN--RLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDF 128 (364)
Q Consensus 51 ~~~~~vg~~~~~~~l~~~~~~~--~~~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 128 (364)
.+++++|....+..+.+.+..- ...+++|+|++||||+++|+++...- ......++.++|.... .+.+...+...
T Consensus 4 ~~~~liG~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~~s--~r~~~pfv~v~c~~~~-~~~~~~~lfg~ 80 (326)
T PRK11608 4 YKDNLLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHYLS--SRWQGPFISLNCAALN-ENLLDSELFGH 80 (326)
T ss_pred ccCccEECCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhC--CccCCCeEEEeCCCCC-HHHHHHHHccc
Confidence 3677999888888777766543 22349999999999999999998653 2234467788887643 23333222111
Q ss_pred Hhc-----C--ccccCCccceEEEEEeCCCCCCHHHHHHHHHHHHHhc-----------cCccEEEEeecc-------cc
Q 017884 129 AST-----Q--SFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYT-----------KNTRFALICNQV-------NK 183 (364)
Q Consensus 129 ~~~-----~--~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~-----------~~~~~Il~~~~~-------~~ 183 (364)
... . ....-....++.++|||++.|+...|..|+.+++... .++++|++++.. ..
T Consensus 81 ~~~~~~g~~~~~~g~l~~a~gGtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~s~~~l~~l~~~g~ 160 (326)
T PRK11608 81 EAGAFTGAQKRHPGRFERADGGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVAEGK 160 (326)
T ss_pred cccccCCcccccCCchhccCCCeEEeCChhhCCHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCchhHHHHHHcCC
Confidence 100 0 0000112357799999999999999999999998632 246777777532 24
Q ss_pred Cchhhhccc--eEEEecCCCh--HHHHHHHHHH----HHHcC----CCCCHHHHHHHHHHc-CCCHHHHHHHHHHHHHhc
Q 017884 184 IIPALQSRC--TRFRFAPLEP--VHVTERLKHV----IEAEG----LDVTEGGLAALVRLC-NGDMRKALNILQSTHMAS 250 (364)
Q Consensus 184 l~~~l~sr~--~~i~~~~~~~--~~~~~~l~~~----~~~~~----~~i~~~~~~~l~~~~-~g~~r~a~~~l~~~~~~~ 250 (364)
+.+.|..|+ ..+.++|+.+ +++..++... +.+.+ ..+++++++.|..+. .||+|.+.+.++.+...+
T Consensus 161 f~~dL~~~l~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~~s~~al~~L~~y~WPGNvrEL~~vl~~a~~~~ 240 (326)
T PRK11608 161 FRADLLDRLAFDVVQLPPLRERQSDIMLMAEHFAIQMCRELGLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRH 240 (326)
T ss_pred chHHHHHhcCCCEEECCChhhhhhhHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHhCCCCcHHHHHHHHHHHHHHhc
Confidence 556676775 4678888875 4554444433 44433 358999999999875 999999999998877643
No 183
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.42 E-value=3.7e-12 Score=116.33 Aligned_cols=199 Identities=17% Similarity=0.202 Sum_probs=135.9
Q ss_pred CCCcchhccHHHHHHHHHHHhcCCC--CcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCCCChHHHHHHHHH
Q 017884 50 QSLADVAAHRDIVDTIDRLTSENRL--PHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQD 127 (364)
Q Consensus 50 ~~~~~~vg~~~~~~~l~~~~~~~~~--~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 127 (364)
..++++||.....+.+++.++.-.. .+++++|++|+||+.+|+.++.. ........++.+||..........+ +..
T Consensus 75 ~~~~~LIG~~~~~~~~~eqik~~ap~~~~vLi~GetGtGKel~A~~iH~~-s~r~~~~PFI~~NCa~~~en~~~~e-LFG 152 (403)
T COG1221 75 EALDDLIGESPSLQELREQIKAYAPSGLPVLIIGETGTGKELFARLIHAL-SARRAEAPFIAFNCAAYSENLQEAE-LFG 152 (403)
T ss_pred hhhhhhhccCHHHHHHHHHHHhhCCCCCcEEEecCCCccHHHHHHHHHHh-hhcccCCCEEEEEHHHhCcCHHHHH-Hhc
Confidence 3688999988888888777776322 23999999999999999999933 2222567789999876543222222 211
Q ss_pred HHhc-------CccccCCccceEEEEEeCCCCCCHHHHHHHHHHHHH-----------hccCccEEEEeec--cccCch-
Q 017884 128 FAST-------QSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEK-----------YTKNTRFALICNQ--VNKIIP- 186 (364)
Q Consensus 128 ~~~~-------~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~-----------~~~~~~~Il~~~~--~~~l~~- 186 (364)
.... .....-...+++.+++||++.|+...|..|+++|++ .+.++++|.+|+. ...+..
T Consensus 153 ~~kGaftGa~~~k~Glfe~A~GGtLfLDEI~~LP~~~Q~kLl~~le~g~~~rvG~~~~~~~dVRli~AT~~~l~~~~~~g 232 (403)
T COG1221 153 HEKGAFTGAQGGKAGLFEQANGGTLFLDEIHRLPPEGQEKLLRVLEEGEYRRVGGSQPRPVDVRLICATTEDLEEAVLAG 232 (403)
T ss_pred cccceeecccCCcCchheecCCCEEehhhhhhCCHhHHHHHHHHHHcCceEecCCCCCcCCCceeeeccccCHHHHHHhh
Confidence 1111 000111224688999999999999999999999997 4567888888753 334555
Q ss_pred -hhhccc--eEEEecCCChH--HHH----HHHHHHHHHcCCCC---CHHHHHHHHHHc-CCCHHHHHHHHHHHHHhc
Q 017884 187 -ALQSRC--TRFRFAPLEPV--HVT----ERLKHVIEAEGLDV---TEGGLAALVRLC-NGDMRKALNILQSTHMAS 250 (364)
Q Consensus 187 -~l~sr~--~~i~~~~~~~~--~~~----~~l~~~~~~~~~~i---~~~~~~~l~~~~-~g~~r~a~~~l~~~~~~~ 250 (364)
++..|. ..+++||+.+. ++. -++...+.+.+..+ +++++..|..+. .||+|.+.|.++.++...
T Consensus 233 ~dl~~rl~~~~I~LPpLrER~~Di~~L~e~Fl~~~~~~l~~~~~~~~~~a~~~L~~y~~pGNirELkN~Ve~~~~~~ 309 (403)
T COG1221 233 ADLTRRLNILTITLPPLRERKEDILLLAEHFLKSEARRLGLPLSVDSPEALRALLAYDWPGNIRELKNLVERAVAQA 309 (403)
T ss_pred cchhhhhcCceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCCCcHHHHHHHHHHHHHHh
Confidence 666654 56788887763 333 33555555555543 356777777664 999999999999888755
No 184
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.42 E-value=1.2e-11 Score=106.37 Aligned_cols=119 Identities=13% Similarity=0.217 Sum_probs=96.1
Q ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHHHhccCccEEEEee------------ccccCchhhhccceEEEecCCChHHHHHH
Q 017884 141 SVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICN------------QVNKIIPALQSRCTRFRFAPLEPVHVTER 208 (364)
Q Consensus 141 ~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~------------~~~~l~~~l~sr~~~i~~~~~~~~~~~~~ 208 (364)
-++|++|||+|.|.-++...|.+.+++-- .+.+|+++| +++-++-.+..|..++...|++.++++++
T Consensus 288 vpGVLFIDEvHMLDIEcFsFlNrAlE~d~-~PiiimaTNrgit~iRGTn~~SphGiP~D~lDR~lII~t~py~~~d~~~I 366 (454)
T KOG2680|consen 288 VPGVLFIDEVHMLDIECFSFLNRALENDM-APIIIMATNRGITRIRGTNYRSPHGIPIDLLDRMLIISTQPYTEEDIKKI 366 (454)
T ss_pred ccceEEEeeehhhhhHHHHHHHHHhhhcc-CcEEEEEcCCceEEeecCCCCCCCCCcHHHhhhhheeecccCcHHHHHHH
Confidence 37799999999999999999999998642 334555553 45678889999999999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHc-CCCHHHHHHHHHHHHHhc-----ccCchHHHHH
Q 017884 209 LKHVIEAEGLDVTEGGLAALVRLC-NGDMRKALNILQSTHMAS-----QQITEEAVYL 260 (364)
Q Consensus 209 l~~~~~~~~~~i~~~~~~~l~~~~-~g~~r~a~~~l~~~~~~~-----~~i~~~~v~~ 260 (364)
|+-+|..+++.+++++++.|.... ..++|.+++++......+ ..+..++|..
T Consensus 367 L~iRc~EEdv~m~~~A~d~Lt~i~~~tsLRYai~Lit~a~~~~~krk~~~v~~~di~r 424 (454)
T KOG2680|consen 367 LRIRCQEEDVEMNPDALDLLTKIGEATSLRYAIHLITAASLVCLKRKGKVVEVDDIER 424 (454)
T ss_pred HHhhhhhhccccCHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhcCceeehhHHHH
Confidence 999999999999999999999876 568999999886544322 2455555544
No 185
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.41 E-value=2e-12 Score=115.46 Aligned_cols=152 Identities=23% Similarity=0.297 Sum_probs=108.2
Q ss_pred CcchhccHHHHHHHHHHHh--------cCCCCcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCCC--C---h
Q 017884 52 LADVAAHRDIVDTIDRLTS--------ENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDR--G---I 118 (364)
Q Consensus 52 ~~~~vg~~~~~~~l~~~~~--------~~~~~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~--~---~ 118 (364)
|+++|-++.....+..+.. +....+++||||||+|||.+|+.+++.- +.++--+++.+.. + +
T Consensus 354 l~~ViL~psLe~Rie~lA~aTaNTK~h~apfRNilfyGPPGTGKTm~ArelAr~S-----GlDYA~mTGGDVAPlG~qaV 428 (630)
T KOG0742|consen 354 LEGVILHPSLEKRIEDLAIATANTKKHQAPFRNILFYGPPGTGKTMFARELARHS-----GLDYAIMTGGDVAPLGAQAV 428 (630)
T ss_pred cCCeecCHHHHHHHHHHHHHhcccccccchhhheeeeCCCCCCchHHHHHHHhhc-----CCceehhcCCCccccchHHH
Confidence 8999999999998888753 2233359999999999999999999984 3444444444432 2 2
Q ss_pred HHHHHHHHHHHhcCccccCCccceEEEEEeCCCCCC---------HHH---HHHHHHHHHHhccCccEEEEeeccccCch
Q 017884 119 DVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMT---------KDA---QFALRRVIEKYTKNTRFALICNQVNKIIP 186 (364)
Q Consensus 119 ~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~---------~~~---~~~L~~~le~~~~~~~~Il~~~~~~~l~~ 186 (364)
..+. .+.+++... ..+-+++|||+|.+. +.. .++|+----..+.+.++++++|.+..++.
T Consensus 429 TkiH-~lFDWakkS-------~rGLllFIDEADAFLceRnktymSEaqRsaLNAlLfRTGdqSrdivLvlAtNrpgdlDs 500 (630)
T KOG0742|consen 429 TKIH-KLFDWAKKS-------RRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSRDIVLVLATNRPGDLDS 500 (630)
T ss_pred HHHH-HHHHHHhhc-------ccceEEEehhhHHHHHHhchhhhcHHHHHHHHHHHHHhcccccceEEEeccCCccchhH
Confidence 2222 234444321 147799999998873 222 33333222344567788999999999999
Q ss_pred hhhccc-eEEEecCCChHHHHHHHHHHHHHc
Q 017884 187 ALQSRC-TRFRFAPLEPVHVTERLKHVIEAE 216 (364)
Q Consensus 187 ~l~sr~-~~i~~~~~~~~~~~~~l~~~~~~~ 216 (364)
++-.|. .+++|+-|..++..++|..++.++
T Consensus 501 AV~DRide~veFpLPGeEERfkll~lYlnky 531 (630)
T KOG0742|consen 501 AVNDRIDEVVEFPLPGEEERFKLLNLYLNKY 531 (630)
T ss_pred HHHhhhhheeecCCCChHHHHHHHHHHHHHH
Confidence 999998 899999999999999998887654
No 186
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.40 E-value=1.8e-12 Score=110.92 Aligned_cols=200 Identities=21% Similarity=0.331 Sum_probs=127.8
Q ss_pred hhccCCCCCcchhccHHHHHHHHHHHhc-----------C-CCCc-EEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEE
Q 017884 44 VEKYRPQSLADVAAHRDIVDTIDRLTSE-----------N-RLPH-LLLYGPPGTGKTSTILAVARKLYGAQYHNMILEL 110 (364)
Q Consensus 44 ~~~~~p~~~~~~vg~~~~~~~l~~~~~~-----------~-~~~~-lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~ 110 (364)
.++-...++.++-|-+..++.++..+.- | .+|. +++||+||+|||.+|+++|+.- +..|+.+
T Consensus 176 ~eKaP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqT-----SATFlRv 250 (440)
T KOG0726|consen 176 VEKAPQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQT-----SATFLRV 250 (440)
T ss_pred cccCchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhccc-----chhhhhh
Confidence 3444445899999999999999988762 1 2333 9999999999999999999874 3444444
Q ss_pred eCCC------CCChHHHHHHHHHHHhcCccccCCccceEEEEEeCCCCCCH-----------HHHHHHHHHHHHh-----
Q 017884 111 NASD------DRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTK-----------DAQFALRRVIEKY----- 168 (364)
Q Consensus 111 ~~~~------~~~~~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~~-----------~~~~~L~~~le~~----- 168 (364)
-++. ..+...+++.+.-.-.. .+.++||||+|.+.. +.|..++.++...
T Consensus 251 vGseLiQkylGdGpklvRqlF~vA~e~---------apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFds 321 (440)
T KOG0726|consen 251 VGSELIQKYLGDGPKLVRELFRVAEEH---------APSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDS 321 (440)
T ss_pred hhHHHHHHHhccchHHHHHHHHHHHhc---------CCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccCccc
Confidence 3332 12444555543332222 367999999999952 3455666666543
Q ss_pred ccCccEEEEeeccccCchhhhccc---eEEEecCCChHHHHHHHHHHHHHcCCCCCHH-HHHHHH----HHcCCCHHHHH
Q 017884 169 TKNTRFALICNQVNKIIPALQSRC---TRFRFAPLEPVHVTERLKHVIEAEGLDVTEG-GLAALV----RLCNGDMRKAL 240 (364)
Q Consensus 169 ~~~~~~Il~~~~~~~l~~~l~sr~---~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~-~~~~l~----~~~~g~~r~a~ 240 (364)
..++.+|++||....++|+|.+-+ ..+.|+.|+...-++++.-... +..+.++ .++.++ ..++.|+....
T Consensus 322 rgDvKvimATnrie~LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs--~Mtl~~dVnle~li~~kddlSGAdIkAic 399 (440)
T KOG0726|consen 322 RGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTS--RMTLAEDVNLEELIMTKDDLSGADIKAIC 399 (440)
T ss_pred cCCeEEEEecccccccCHhhcCCCccccccccCCCchhhhceeEEEeec--ccchhccccHHHHhhcccccccccHHHHH
Confidence 356889999999999999998854 5599999988877766543322 2233222 233333 33556666666
Q ss_pred HHHHHHHHhc--ccCchHHHH
Q 017884 241 NILQSTHMAS--QQITEEAVY 259 (364)
Q Consensus 241 ~~l~~~~~~~--~~i~~~~v~ 259 (364)
...-.+++-. ..++.++..
T Consensus 400 tEaGllAlRerRm~vt~~DF~ 420 (440)
T KOG0726|consen 400 TEAGLLALRERRMKVTMEDFK 420 (440)
T ss_pred HHHhHHHHHHHHhhccHHHHH
Confidence 5554444322 244444443
No 187
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.40 E-value=1.1e-12 Score=114.19 Aligned_cols=183 Identities=18% Similarity=0.322 Sum_probs=107.3
Q ss_pred hhccHHHHHHHHHHHhcCCCCcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCCCChHHHHHH---------H
Q 017884 55 VAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQ---------I 125 (364)
Q Consensus 55 ~vg~~~~~~~l~~~~~~~~~~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---------i 125 (364)
++|++..++.|.+++..+...+++++||.|+|||++++.+.+.+...+. .++.+.............. +
T Consensus 1 F~gR~~el~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~--~~~y~~~~~~~~~~~~~~~~~~~~~~~~l 78 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGPSQHILLYGPRGSGKTSLLKEFINELKEKGY--KVVYIDFLEESNESSLRSFIEETSLADEL 78 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHCT--EE--CCCHHCCTTBSHHHHHHHHHHHHHHHCHC
T ss_pred CCCHHHHHHHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHhhhcCC--cEEEEecccchhhhHHHHHHHHHHHHHHH
Confidence 5799999999999999887778999999999999999999998733222 1112222111111111111 0
Q ss_pred HH-HHhcCcc-c----------------------cCCccceEEEEEeCCCCCC------HHHHHHHHHHHHHh--ccCcc
Q 017884 126 QD-FASTQSF-S----------------------FGVKASVKLVLLDEADAMT------KDAQFALRRVIEKY--TKNTR 173 (364)
Q Consensus 126 ~~-~~~~~~~-~----------------------~~~~~~~~viiiDe~~~l~------~~~~~~L~~~le~~--~~~~~ 173 (364)
.. +....+- . +.....+.+|+|||++.+. +.....|..+++.. ..+..
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 158 (234)
T PF01637_consen 79 SEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNVS 158 (234)
T ss_dssp HHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTEE
T ss_pred HHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCce
Confidence 00 1000000 0 0001124899999999998 45566777777762 33455
Q ss_pred EEEEeeccc------cCchhhhccceEEEecCCChHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHHH
Q 017884 174 FALICNQVN------KIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDV--TEGGLAALVRLCNGDMRKAL 240 (364)
Q Consensus 174 ~Il~~~~~~------~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~i--~~~~~~~l~~~~~g~~r~a~ 240 (364)
+|+++.... .-..++..|+..+.++|++.++..+++...+... ..+ +++.++.+...+||+|+.+.
T Consensus 159 ~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~gG~P~~l~ 232 (234)
T PF01637_consen 159 IVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL-IKLPFSDEDIEEIYSLTGGNPRYLQ 232 (234)
T ss_dssp EEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC-------HHHHHHHHHHHTT-HHHHH
T ss_pred EEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh-hcccCCHHHHHHHHHHhCCCHHHHh
Confidence 666654321 2234566778779999999999999999987766 555 99999999999999998764
No 188
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=99.39 E-value=6.6e-11 Score=114.58 Aligned_cols=197 Identities=15% Similarity=0.122 Sum_probs=132.9
Q ss_pred CCcchhccHHHHHHHHHHHhcCC--CCcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCCCChHHHHHHHHHH
Q 017884 51 SLADVAAHRDIVDTIDRLTSENR--LPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDF 128 (364)
Q Consensus 51 ~~~~~vg~~~~~~~l~~~~~~~~--~~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 128 (364)
.+.+++|+...+..+.+.+..-. ..+++|+|++||||+++|++++..-.. ....++.+||..... ..+...+...
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r--~~~p~v~v~c~~~~~-~~~e~~lfG~ 261 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAASPR--ADKPLVYLNCAALPE-SLAESELFGH 261 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCCc--CCCCeEEEEcccCCh-HHHHHHhcCc
Confidence 56789999988888877776432 234999999999999999999987432 244677888876432 2222222111
Q ss_pred Hhc-----C--ccccCCccceEEEEEeCCCCCCHHHHHHHHHHHHHhc-----------cCccEEEEeecc-------cc
Q 017884 129 AST-----Q--SFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYT-----------KNTRFALICNQV-------NK 183 (364)
Q Consensus 129 ~~~-----~--~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~-----------~~~~~Il~~~~~-------~~ 183 (364)
... . ....-....++.++|||++.|+...|..|++++++.. .++++|++++.. ..
T Consensus 262 ~~g~~~ga~~~~~g~~~~a~gGtL~ldeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~l~~~~~~~~ 341 (509)
T PRK05022 262 VKGAFTGAISNRSGKFELADGGTLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDRSLRVDVRVIAATNRDLREEVRAGR 341 (509)
T ss_pred cccccCCCcccCCcchhhcCCCEEEecChhhCCHHHHHHHHHHHhcCCEeeCCCCcceecceEEEEecCCCHHHHHHcCC
Confidence 000 0 0000112356789999999999999999999998632 356888888543 23
Q ss_pred Cchhhhccc--eEEEecCCCh--HHHHHHHH----HHHHHc---CCCCCHHHHHHHHHHc-CCCHHHHHHHHHHHHHhc
Q 017884 184 IIPALQSRC--TRFRFAPLEP--VHVTERLK----HVIEAE---GLDVTEGGLAALVRLC-NGDMRKALNILQSTHMAS 250 (364)
Q Consensus 184 l~~~l~sr~--~~i~~~~~~~--~~~~~~l~----~~~~~~---~~~i~~~~~~~l~~~~-~g~~r~a~~~l~~~~~~~ 250 (364)
+.+.+-.|. ..+.+||+.+ +++..++. +.+.+. ...+++++++.|..+. .||+|.+.+.++.++..+
T Consensus 342 f~~dL~~rl~~~~i~lPpLreR~eDI~~L~~~fl~~~~~~~~~~~~~~s~~a~~~L~~y~WPGNvrEL~~~i~ra~~~~ 420 (509)
T PRK05022 342 FRADLYHRLSVFPLSVPPLRERGDDVLLLAGYFLEQNRARLGLRSLRLSPAAQAALLAYDWPGNVRELEHVISRAALLA 420 (509)
T ss_pred ccHHHHhcccccEeeCCCchhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCCCcHHHHHHHHHHHHHhc
Confidence 455555564 4577777765 34444333 333333 3578999999999875 899999999999887644
No 189
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=2.1e-12 Score=118.21 Aligned_cols=177 Identities=18% Similarity=0.225 Sum_probs=125.0
Q ss_pred hccCCCCCcchhccHHHHHHHHHHHhc----------CC--CCcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeC
Q 017884 45 EKYRPQSLADVAAHRDIVDTIDRLTSE----------NR--LPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNA 112 (364)
Q Consensus 45 ~~~~p~~~~~~vg~~~~~~~l~~~~~~----------~~--~~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~ 112 (364)
+.-++..|+++.|.+.+.+.+...+.- -+ ...+|+.||||+|||.+++++|.+. ...++.+++
T Consensus 145 ~~~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr~p~rglLLfGPpgtGKtmL~~aiAsE~-----~atff~iSa 219 (428)
T KOG0740|consen 145 DTLRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGLREPVRGLLLFGPPGTGKTMLAKAIATES-----GATFFNISA 219 (428)
T ss_pred ccCCcccccCCcchhhHHHHhhhhhhhcccchHhhhccccccchhheecCCCCchHHHHHHHHhhh-----cceEeeccH
Confidence 456678899999988888877766531 12 2238999999999999999999996 455666665
Q ss_pred CCCCC-----hHHHHHHHHHHHhcCccccCCccceEEEEEeCCCCCCHH-----------H-HHHHHHHHH---HhccCc
Q 017884 113 SDDRG-----IDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKD-----------A-QFALRRVIE---KYTKNT 172 (364)
Q Consensus 113 ~~~~~-----~~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~-----------~-~~~L~~~le---~~~~~~ 172 (364)
+...+ .+.....+...+... .+.|++|||+|.+... . .+.|+.+.- .+.+++
T Consensus 220 ssLtsK~~Ge~eK~vralf~vAr~~--------qPsvifidEidslls~Rs~~e~e~srr~ktefLiq~~~~~s~~~drv 291 (428)
T KOG0740|consen 220 SSLTSKYVGESEKLVRALFKVARSL--------QPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFDGKNSAPDDRV 291 (428)
T ss_pred HHhhhhccChHHHHHHHHHHHHHhc--------CCeEEEechhHHHHhhcCCcccccchhhhhHHHhhhccccCCCCCeE
Confidence 44211 112222233333332 3679999999998521 1 222333222 123355
Q ss_pred cEEEEeeccccCchhhhccc-eEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Q 017884 173 RFALICNQVNKIIPALQSRC-TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNG 234 (364)
Q Consensus 173 ~~Il~~~~~~~l~~~l~sr~-~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g 234 (364)
.+|.+||.++.++.++++|+ .++.++.|+.+....++.+.+...+..+.+..++.|++.+.|
T Consensus 292 lvigaTN~P~e~Dea~~Rrf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~~~Teg 354 (428)
T KOG0740|consen 292 LVIGATNRPWELDEAARRRFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDLDISLLAKVTEG 354 (428)
T ss_pred EEEecCCCchHHHHHHHHHhhceeeecCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcC
Confidence 66777899999999999998 567788888888888999999888888899999999988754
No 190
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=7.9e-12 Score=118.80 Aligned_cols=184 Identities=19% Similarity=0.288 Sum_probs=121.2
Q ss_pred cchhccHHHHHHHHHHHhcCC------CCcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCCCChHHHH----
Q 017884 53 ADVAAHRDIVDTIDRLTSENR------LPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVR---- 122 (364)
Q Consensus 53 ~~~vg~~~~~~~l~~~~~~~~------~~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~---- 122 (364)
++=.|.+++++++...+.-++ .+-++|+||||+|||++++.+|+++.. .|+.++-........++
T Consensus 411 eDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnR-----kFfRfSvGG~tDvAeIkGHRR 485 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNR-----KFFRFSVGGMTDVAEIKGHRR 485 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCC-----ceEEEeccccccHHhhcccce
Confidence 344677888888888876432 223799999999999999999999943 33344332222222222
Q ss_pred -------HHHHHHHhcCccccCCccceEEEEEeCCCCCCH----HHHHHHHHHHHHh-------------c--cCccEEE
Q 017884 123 -------QQIQDFASTQSFSFGVKASVKLVLLDEADAMTK----DAQFALRRVIEKY-------------T--KNTRFAL 176 (364)
Q Consensus 123 -------~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~~----~~~~~L~~~le~~-------------~--~~~~~Il 176 (364)
..+.+...... . ..-+++|||+|.+.. +-..+|+++|+-- - +.+.||.
T Consensus 486 TYVGAMPGkiIq~LK~v~----t--~NPliLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDHYLdVp~DLSkVLFic 559 (906)
T KOG2004|consen 486 TYVGAMPGKIIQCLKKVK----T--ENPLILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDHYLDVPVDLSKVLFIC 559 (906)
T ss_pred eeeccCChHHHHHHHhhC----C--CCceEEeehhhhhCCCCCCChHHHHHHhcChhhccchhhhccccccchhheEEEE
Confidence 12222222211 1 355999999999963 2356777776521 1 3455677
Q ss_pred EeeccccCchhhhccceEEEecCCChHHHHHHHHHHHH-----H-----cCCCCCHHHHHHHHHHc--CCCHHHHHHHHH
Q 017884 177 ICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIE-----A-----EGLDVTEGGLAALVRLC--NGDMRKALNILQ 244 (364)
Q Consensus 177 ~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~-----~-----~~~~i~~~~~~~l~~~~--~g~~r~a~~~l~ 244 (364)
++|..+.++++|+.|..+|+++.+..++-.++..+++- + +.++++++++..|+++. ..-+|.+-..++
T Consensus 560 TAN~idtIP~pLlDRMEvIelsGYv~eEKv~IA~~yLip~a~~~~gl~~e~v~is~~al~~lI~~YcrEaGVRnLqk~ie 639 (906)
T KOG2004|consen 560 TANVIDTIPPPLLDRMEVIELSGYVAEEKVKIAERYLIPQALKDCGLKPEQVKISDDALLALIERYCREAGVRNLQKQIE 639 (906)
T ss_pred eccccccCChhhhhhhheeeccCccHHHHHHHHHHhhhhHHHHHcCCCHHhcCccHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 77999999999999999999999999988777666543 2 24678899887777554 233565555554
Q ss_pred HHH
Q 017884 245 STH 247 (364)
Q Consensus 245 ~~~ 247 (364)
+++
T Consensus 640 kI~ 642 (906)
T KOG2004|consen 640 KIC 642 (906)
T ss_pred HHH
Confidence 443
No 191
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.38 E-value=6.2e-11 Score=110.70 Aligned_cols=201 Identities=14% Similarity=0.120 Sum_probs=119.1
Q ss_pred cchhccHHHHHHHHHHHhcCCCCcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCC---CCChHHHHHHH--HH
Q 017884 53 ADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASD---DRGIDVVRQQI--QD 127 (364)
Q Consensus 53 ~~~vg~~~~~~~l~~~~~~~~~~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~i--~~ 127 (364)
..++|++++++.+...+..+ .|++|+||||+|||++|+++++.....+ .+.+.....+. ..|...+.... ..
T Consensus 20 ~~i~gre~vI~lll~aalag--~hVLL~GpPGTGKT~LAraLa~~~~~~~-~F~~~~~~fttp~DLfG~l~i~~~~~~g~ 96 (498)
T PRK13531 20 KGLYERSHAIRLCLLAALSG--ESVFLLGPPGIAKSLIARRLKFAFQNAR-AFEYLMTRFSTPEEVFGPLSIQALKDEGR 96 (498)
T ss_pred hhccCcHHHHHHHHHHHccC--CCEEEECCCChhHHHHHHHHHHHhcccC-cceeeeeeecCcHHhcCcHHHhhhhhcCc
Confidence 45889999999988888776 6799999999999999999999864322 22222221111 11111111110 00
Q ss_pred HHhcCccccCCccceEEEEEeCCCCCCHHHHHHHHHHHHHhc---------cCccEEEEe-eccc---cCchhhhccc-e
Q 017884 128 FASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYT---------KNTRFALIC-NQVN---KIIPALQSRC-T 193 (364)
Q Consensus 128 ~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~---------~~~~~Il~~-~~~~---~l~~~l~sr~-~ 193 (364)
+.... -+.-....++++||+..+++..++.|+..|++.. -..++++++ |... ...+++..|+ .
T Consensus 97 f~r~~---~G~L~~A~lLfLDEI~rasp~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN~LPE~g~~leAL~DRFli 173 (498)
T PRK13531 97 YQRLT---SGYLPEAEIVFLDEIWKAGPAILNTLLTAINERRFRNGAHEEKIPMRLLVTASNELPEADSSLEALYDRMLI 173 (498)
T ss_pred hhhhc---CCccccccEEeecccccCCHHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEECCCCcccCCchHHhHhhEEE
Confidence 10000 0100023499999999999999999999997632 223454444 4322 2334788898 4
Q ss_pred EEEecCCCh-HHHHHHHHHHHH-----------------------HcCCCCCHHHHHHHHHHcC----------CCHHHH
Q 017884 194 RFRFAPLEP-VHVTERLKHVIE-----------------------AEGLDVTEGGLAALVRLCN----------GDMRKA 239 (364)
Q Consensus 194 ~i~~~~~~~-~~~~~~l~~~~~-----------------------~~~~~i~~~~~~~l~~~~~----------g~~r~a 239 (364)
.+.+++++. ++..++|..... -..+.+++...+++..... -++|..
T Consensus 174 ri~vp~l~~~~~e~~lL~~~~~~~~~~~~~~~vis~eel~~lq~~v~~V~v~d~v~eyI~~L~~~lr~~r~~~~~SpR~~ 253 (498)
T PRK13531 174 RLWLDKVQDKANFRSMLTSQQDENDNPVPASLQITDEEYQQWQKEIGKITLPDHVFELIFQLRQQLDALPNAPYVSDRRW 253 (498)
T ss_pred EEECCCCCchHHHHHHHHcccccccCCCcccCCCCHHHHHHHHHHhcceeCCHHHHHHHHHHHHHHhcCCCCCCcCcHHH
Confidence 577788864 555666654211 1245667777777765531 356666
Q ss_pred HHHHHHHHH---hc--ccCchHHHH
Q 017884 240 LNILQSTHM---AS--QQITEEAVY 259 (364)
Q Consensus 240 ~~~l~~~~~---~~--~~i~~~~v~ 259 (364)
+.++..+.. .. ..++.+||.
T Consensus 254 ~~l~~~akA~A~l~GR~~V~p~Dv~ 278 (498)
T PRK13531 254 KKAIRLLQASAFFSGRDAIAPIDLI 278 (498)
T ss_pred HHHHHHHHHHHHHCCCCCCCHHHHH
Confidence 665543332 22 367777776
No 192
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=99.38 E-value=1.1e-10 Score=108.73 Aligned_cols=209 Identities=17% Similarity=0.204 Sum_probs=139.8
Q ss_pred cCCCCCcchhccHHHHHHHHHHHhcCCC-C-cEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCCCChHHHHHH
Q 017884 47 YRPQSLADVAAHRDIVDTIDRLTSENRL-P-HLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQ 124 (364)
Q Consensus 47 ~~p~~~~~~vg~~~~~~~l~~~~~~~~~-~-~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (364)
..+.+|++++|....+..+...++.... + .+++.|++||||..+|+++++.- +-....|+.+||... ....+...
T Consensus 239 ~a~y~f~~Iig~S~~m~~~~~~akr~A~tdstVLi~GESGTGKElfA~~IH~~S--~R~~~PFIaiNCaAi-Pe~LlESE 315 (560)
T COG3829 239 KAKYTFDDIIGESPAMLRVLELAKRIAKTDSTVLILGESGTGKELFARAIHNLS--PRANGPFIAINCAAI-PETLLESE 315 (560)
T ss_pred ccccchhhhccCCHHHHHHHHHHHhhcCCCCcEEEecCCCccHHHHHHHHHhcC--cccCCCeEEEecccC-CHHHHHHH
Confidence 3456899999988888877777765432 2 39999999999999999998873 334556788888763 22333333
Q ss_pred HHHHHhcCccc---------cCCccceEEEEEeCCCCCCHHHHHHHHHHHHHh-----------ccCccEEEEeeccc--
Q 017884 125 IQDFASTQSFS---------FGVKASVKLVLLDEADAMTKDAQFALRRVIEKY-----------TKNTRFALICNQVN-- 182 (364)
Q Consensus 125 i~~~~~~~~~~---------~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~-----------~~~~~~Il~~~~~~-- 182 (364)
+...... .|. .-..++++.+|+||+..|+...|..|++++++. +.++++|.+||..-
T Consensus 316 LFGye~G-AFTGA~~~GK~GlfE~A~gGTLFLDEIgempl~LQaKLLRVLQEkei~rvG~t~~~~vDVRIIAATN~nL~~ 394 (560)
T COG3829 316 LFGYEKG-AFTGASKGGKPGLFELANGGTLFLDEIGEMPLPLQAKLLRVLQEKEIERVGGTKPIPVDVRIIAATNRNLEK 394 (560)
T ss_pred HhCcCCc-cccccccCCCCcceeeccCCeEEehhhccCCHHHHHHHHHHHhhceEEecCCCCceeeEEEEEeccCcCHHH
Confidence 3222111 110 011235779999999999999999999999973 45778888887432
Q ss_pred -----cCchhhhccceE--EEecCCCh--HHHHHH----HHHHHHHcC--C-CCCHHHHHHHHHHc-CCCHHHHHHHHHH
Q 017884 183 -----KIIPALQSRCTR--FRFAPLEP--VHVTER----LKHVIEAEG--L-DVTEGGLAALVRLC-NGDMRKALNILQS 245 (364)
Q Consensus 183 -----~l~~~l~sr~~~--i~~~~~~~--~~~~~~----l~~~~~~~~--~-~i~~~~~~~l~~~~-~g~~r~a~~~l~~ 245 (364)
.+.+.|--|..+ +.+||+.+ +++... |.+..++.+ + .++++++..|.++. +||+|.+-|.++.
T Consensus 395 ~i~~G~FReDLYYRLNV~~i~iPPLReR~eDI~~L~~~Fl~k~s~~~~~~v~~ls~~a~~~L~~y~WPGNVRELeNviER 474 (560)
T COG3829 395 MIAEGTFREDLYYRLNVIPITIPPLRERKEDIPLLAEYFLDKFSRRYGRNVKGLSPDALALLLRYDWPGNVRELENVIER 474 (560)
T ss_pred HHhcCcchhhheeeeceeeecCCCcccCcchHHHHHHHHHHHHHHHcCCCcccCCHHHHHHHHhCCCCchHHHHHHHHHH
Confidence 333444445544 55566654 344333 333344443 2 48899999998874 9999999999998
Q ss_pred HHHhc---ccCchHHHH
Q 017884 246 THMAS---QQITEEAVY 259 (364)
Q Consensus 246 ~~~~~---~~i~~~~v~ 259 (364)
+.... ..|+.+++-
T Consensus 475 ~v~~~~~~~~I~~~~lp 491 (560)
T COG3829 475 AVNLVESDGLIDADDLP 491 (560)
T ss_pred HHhccCCcceeehhhcc
Confidence 88532 346665543
No 193
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.37 E-value=1e-11 Score=121.60 Aligned_cols=186 Identities=18% Similarity=0.291 Sum_probs=128.8
Q ss_pred cchhccHHHHHHHHHHHhcC-------C--CCcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCCCChHHHHH
Q 017884 53 ADVAAHRDIVDTIDRLTSEN-------R--LPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQ 123 (364)
Q Consensus 53 ~~~vg~~~~~~~l~~~~~~~-------~--~~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (364)
..++||++++..+.+.++.. . ...++|.||+|+|||.+|+++|..+++.. ...+.++.+.......
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e--~aliR~DMSEy~EkHs--- 565 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDE--QALIRIDMSEYMEKHS--- 565 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCC--ccceeechHHHHHHHH---
Confidence 45899999999998887632 2 22389999999999999999999997543 3445565544321111
Q ss_pred HHHHHHhcCccccCC------------ccceEEEEEeCCCCCCHHHHHHHHHHHHHhc-----------cCccEEEEeec
Q 017884 124 QIQDFASTQSFSFGV------------KASVKLVLLDEADAMTKDAQFALRRVIEKYT-----------KNTRFALICNQ 180 (364)
Q Consensus 124 ~i~~~~~~~~~~~~~------------~~~~~viiiDe~~~l~~~~~~~L~~~le~~~-----------~~~~~Il~~~~ 180 (364)
+......+|- +-. ..++.||++||+++-.++..+.|+.+|+... .++.+|++||-
T Consensus 566 -VSrLIGaPPG-YVGyeeGG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDdGrLTD~~Gr~VdFrNtiIImTSN~ 643 (786)
T COG0542 566 -VSRLIGAPPG-YVGYEEGGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDDGRLTDGQGRTVDFRNTIIIMTSNA 643 (786)
T ss_pred -HHHHhCCCCC-CceeccccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcCCeeecCCCCEEecceeEEEEeccc
Confidence 2222222221 111 1247899999999999999999999999742 57888999851
Q ss_pred cc----------------------------cCchhhhccc-eEEEecCCChHHHHHHHHHHHH-------HcC--CCCCH
Q 017884 181 VN----------------------------KIIPALQSRC-TRFRFAPLEPVHVTERLKHVIE-------AEG--LDVTE 222 (364)
Q Consensus 181 ~~----------------------------~l~~~l~sr~-~~i~~~~~~~~~~~~~l~~~~~-------~~~--~~i~~ 222 (364)
-. .+.|.+.+|. .++.|.+++.+.+.+++...+. ..+ +.+++
T Consensus 644 Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLNRid~II~F~~L~~~~l~~Iv~~~L~~l~~~L~~~~i~l~~s~ 723 (786)
T COG0542 644 GSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLNRIDEIIPFNPLSKEVLERIVDLQLNRLAKRLAERGITLELSD 723 (786)
T ss_pred chHHHHhhccccccchhhhHHHHHHHHHHhhCCHHHHhhcccEEeccCCCHHHHHHHHHHHHHHHHHHHHhCCceEEECH
Confidence 10 2345667777 4899999999998888766544 233 46789
Q ss_pred HHHHHHHHHcC---CCHHHHHHHHHH
Q 017884 223 GGLAALVRLCN---GDMRKALNILQS 245 (364)
Q Consensus 223 ~~~~~l~~~~~---g~~r~a~~~l~~ 245 (364)
++.++|++.+. .-.|-+...++.
T Consensus 724 ~a~~~l~~~gyd~~~GARpL~R~Iq~ 749 (786)
T COG0542 724 EAKDFLAEKGYDPEYGARPLRRAIQQ 749 (786)
T ss_pred HHHHHHHHhccCCCcCchHHHHHHHH
Confidence 99999998863 234555555543
No 194
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.37 E-value=2.3e-11 Score=115.51 Aligned_cols=180 Identities=21% Similarity=0.225 Sum_probs=123.4
Q ss_pred CCCcchhccHHHHHHHHHHHhcC------------CC-CcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCC-
Q 017884 50 QSLADVAAHRDIVDTIDRLTSEN------------RL-PHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDD- 115 (364)
Q Consensus 50 ~~~~~~vg~~~~~~~l~~~~~~~------------~~-~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~- 115 (364)
..|+++.|..++++.|.+.+.-. +. ..+++|||||||||.+|.+++... ...++.+-++..
T Consensus 664 i~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~-----~~~fisvKGPElL 738 (952)
T KOG0735|consen 664 IRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNS-----NLRFISVKGPELL 738 (952)
T ss_pred CCceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhC-----CeeEEEecCHHHH
Confidence 46899999999999888887622 11 239999999999999999999974 666776655431
Q ss_pred -----CChHHHHHHHHHHHhcCccccCCccceEEEEEeCCCCCCH-----------HHHHHHHHHHHHhc--cCccEEEE
Q 017884 116 -----RGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTK-----------DAQFALRRVIEKYT--KNTRFALI 177 (364)
Q Consensus 116 -----~~~~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~~-----------~~~~~L~~~le~~~--~~~~~Il~ 177 (364)
.+...+++.+..... ..++|+++||+|.+.+ ...+.|+.-|+... ..+.++.+
T Consensus 739 ~KyIGaSEq~vR~lF~rA~~---------a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~i~aa 809 (952)
T KOG0735|consen 739 SKYIGASEQNVRDLFERAQS---------AKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGVYILAA 809 (952)
T ss_pred HHHhcccHHHHHHHHHHhhc---------cCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccceEEEEEe
Confidence 122334443333221 1588999999999953 45778888877533 23445556
Q ss_pred eeccccCchhhhccc---eEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC----CHHHHHHHHH
Q 017884 178 CNQVNKIIPALQSRC---TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNG----DMRKALNILQ 244 (364)
Q Consensus 178 ~~~~~~l~~~l~sr~---~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g----~~r~a~~~l~ 244 (364)
|..++-++++|.+-+ ..+.++.|++.+..++++......... ++-.++.++..+.| |+..++...+
T Consensus 810 TsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~-~~vdl~~~a~~T~g~tgADlq~ll~~A~ 882 (952)
T KOG0735|consen 810 TSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKD-TDVDLECLAQKTDGFTGADLQSLLYNAQ 882 (952)
T ss_pred cCCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCc-cccchHHHhhhcCCCchhhHHHHHHHHH
Confidence 678888999998754 568889999999999998877644322 33446777777655 4444444333
No 195
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=1.9e-11 Score=116.63 Aligned_cols=197 Identities=23% Similarity=0.283 Sum_probs=131.3
Q ss_pred CCCcchhccHHHHHHHHHHHh-----------cCCCCc-EEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCC--
Q 017884 50 QSLADVAAHRDIVDTIDRLTS-----------ENRLPH-LLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDD-- 115 (364)
Q Consensus 50 ~~~~~~vg~~~~~~~l~~~~~-----------~~~~~~-lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~-- 115 (364)
.+|.|+.|.++++..+.+.+. ++.+|. ++++||||+|||.+|++++.+. ...++.+++++.
T Consensus 147 v~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA-----~VPFf~iSGS~FVe 221 (596)
T COG0465 147 VTFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEA-----GVPFFSISGSDFVE 221 (596)
T ss_pred cChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhccc-----CCCceeccchhhhh
Confidence 579999999999998777664 234555 8999999999999999999986 455555555542
Q ss_pred ----CChHHHHHHHHHHHhcCccccCCccceEEEEEeCCCCCCH--------------HHHHHHHHHHHHhccC--ccEE
Q 017884 116 ----RGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTK--------------DAQFALRRVIEKYTKN--TRFA 175 (364)
Q Consensus 116 ----~~~~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~~--------------~~~~~L~~~le~~~~~--~~~I 175 (364)
-+...+++...+.... .++||+|||+|.... ...+.|+--|+.+..+ +.++
T Consensus 222 mfVGvGAsRVRdLF~qAkk~---------aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~gvivi 292 (596)
T COG0465 222 MFVGVGASRVRDLFEQAKKN---------APCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEGVIVI 292 (596)
T ss_pred hhcCCCcHHHHHHHHHhhcc---------CCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCCceEEE
Confidence 2445666666665443 257999999999852 2456677777776643 3444
Q ss_pred EEeeccccCchhhhc--cc-eEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC----CHHHHHHHHHHHHH
Q 017884 176 LICNQVNKIIPALQS--RC-TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNG----DMRKALNILQSTHM 248 (364)
Q Consensus 176 l~~~~~~~l~~~l~s--r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g----~~r~a~~~l~~~~~ 248 (364)
..||.++-++++|.+ |+ +.+..+.|+-....++++-.++..... ..-.+..+++.+.| |+...+|+....+.
T Consensus 293 aaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~-~~Vdl~~iAr~tpGfsGAdL~nl~NEAal~aa 371 (596)
T COG0465 293 AATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLA-EDVDLKKIARGTPGFSGADLANLLNEAALLAA 371 (596)
T ss_pred ecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCC-CcCCHHHHhhhCCCcccchHhhhHHHHHHHHH
Confidence 456888888898876 45 678888888888889988665544333 11123447777654 55555554433332
Q ss_pred h--cccCchHHHHHh
Q 017884 249 A--SQQITEEAVYLC 261 (364)
Q Consensus 249 ~--~~~i~~~~v~~~ 261 (364)
- ...|+..++.+.
T Consensus 372 r~n~~~i~~~~i~ea 386 (596)
T COG0465 372 RRNKKEITMRDIEEA 386 (596)
T ss_pred HhcCeeEeccchHHH
Confidence 1 235666555443
No 196
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.35 E-value=2.8e-11 Score=112.20 Aligned_cols=189 Identities=20% Similarity=0.259 Sum_probs=116.0
Q ss_pred cchhccHHHHHHHHHHHh-------c---CC--------CCcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCC
Q 017884 53 ADVAAHRDIVDTIDRLTS-------E---NR--------LPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASD 114 (364)
Q Consensus 53 ~~~vg~~~~~~~l~~~~~-------~---~~--------~~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~ 114 (364)
+.++||+++++.+...+. . .. ..+++|+||||+|||++|+++++.+. ..+..++++.
T Consensus 77 ~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~-----~pf~~~da~~ 151 (413)
T TIGR00382 77 EYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILN-----VPFAIADATT 151 (413)
T ss_pred ceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcC-----CCeEEechhh
Confidence 446999999998866552 1 11 24699999999999999999998873 3333444332
Q ss_pred CC--C--hHHHHHHHHHHHhcCccccCCccceEEEEEeCCCCCCH--------------HHHHHHHHHHHHhc-------
Q 017884 115 DR--G--IDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTK--------------DAQFALRRVIEKYT------- 169 (364)
Q Consensus 115 ~~--~--~~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~~--------------~~~~~L~~~le~~~------- 169 (364)
.. + .......+.......+..+. ...+.+|+|||+|.+.. ..|+.|+++|+...
T Consensus 152 L~~~gyvG~d~e~~L~~~~~~~~~~l~-~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLeG~~~~v~~~~ 230 (413)
T TIGR00382 152 LTEAGYVGEDVENILLKLLQAADYDVE-KAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIEGTVANVPPQG 230 (413)
T ss_pred ccccccccccHHHHHHHHHHhCcccHH-hcccceEEecccchhchhhccccccccccchhHHHHHHHHhhccceecccCC
Confidence 11 0 11122333333222221111 12467999999999976 57999999996421
Q ss_pred ------cCccEEEEeecc---------------------------c-----------------------cCchhhhccc-
Q 017884 170 ------KNTRFALICNQV---------------------------N-----------------------KIIPALQSRC- 192 (364)
Q Consensus 170 ------~~~~~Il~~~~~---------------------------~-----------------------~l~~~l~sr~- 192 (364)
.++.+|.++|-. . .+.|.+..|.
T Consensus 231 gr~~~~~~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEflgRld 310 (413)
T TIGR00382 231 GRKHPYQEFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKFGLIPEFIGRLP 310 (413)
T ss_pred CccccCCCeEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHHhhHHHHhCCCC
Confidence 122344443320 0 1346667777
Q ss_pred eEEEecCCChHHHHHHHHHH----HHH-------cC--CCCCHHHHHHHHHHc---CCCHHHHHHHHHHHH
Q 017884 193 TRFRFAPLEPVHVTERLKHV----IEA-------EG--LDVTEGGLAALVRLC---NGDMRKALNILQSTH 247 (364)
Q Consensus 193 ~~i~~~~~~~~~~~~~l~~~----~~~-------~~--~~i~~~~~~~l~~~~---~g~~r~a~~~l~~~~ 247 (364)
.++.|.|++.+++.+++... .++ .+ +.++++++++|++.+ .--.|.+...++...
T Consensus 311 ~Iv~f~pL~~~~L~~Il~~~~n~l~kq~~~~l~~~gi~L~~t~~a~~~Ia~~~~~~~~GAR~Lr~iie~~l 381 (413)
T TIGR00382 311 VIATLEKLDEEALIAILTKPKNALVKQYQALFKMDNVELDFEEEALKAIAKKALERKTGARGLRSIVEGLL 381 (413)
T ss_pred eEeecCCCCHHHHHHHHHHHHHHHHHHHHHHhccCCeEEEECHHHHHHHHHhCCCCCCCchHHHHHHHHhh
Confidence 67889999999999887652 221 23 356899999999875 223555555555443
No 197
>PF06144 DNA_pol3_delta: DNA polymerase III, delta subunit; InterPro: IPR010372 DNA polymerase III, delta subunit (2.7.7.7 from EC) is required for, along with delta' subunit, the assembly of the processivity factor beta(2) onto primed DNA in the DNA polymerase III holoenzyme-catalysed reaction []. The delta subunit is also known as HolA.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication, 0009360 DNA polymerase III complex; PDB: 3GLG_F 1XXH_A 1JQL_B 3GLF_F 1JQJ_C 3GLI_F.
Probab=99.35 E-value=8.4e-12 Score=103.56 Aligned_cols=163 Identities=17% Similarity=0.256 Sum_probs=115.7
Q ss_pred EEEeCCCCccHHHHHHHHHHHHcCCCC-CCcEEEEeCCCCCChHHHHHHHHHHHhcCccccCCccceEEEEEeCC----C
Q 017884 77 LLLYGPPGTGKTSTILAVARKLYGAQY-HNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEA----D 151 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~----~ 151 (364)
+++||+.-.-+...++.+.+.+...+. ...+..+++.. .....+...+.+.++ |+. +++|+|.++ +
T Consensus 1 Yll~G~d~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~s~sl-F~~---~klvii~~~~~l~~ 71 (172)
T PF06144_consen 1 YLLYGEDSFLIEEYIKKIRKALIKKDFDDFNVIVFDGSE-----DDIDELLEELQSPSL-FGD---KKLVIIKNAPFLKD 71 (172)
T ss_dssp EEEEES-HHHHHHHHHHHHHHHHTTTEEEEEEEE-STTS------HHH-HTTTSTTTTS-SSS---EEEEEEE-----TT
T ss_pred CEEEeCcHHHHHHHHHHHHHHhhcCCCccceEEEEcccc-----CcHHHHHHHHhcCCc-cCC---CeEEEEecCccccc
Confidence 589999988889999999888554332 23333343332 112224555677776 665 899999999 4
Q ss_pred CCCHHHHHHHHHHHHHhccCccEEEEee-ccc---cCchhhhccceEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHH
Q 017884 152 AMTKDAQFALRRVIEKYTKNTRFALICN-QVN---KIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAA 227 (364)
Q Consensus 152 ~l~~~~~~~L~~~le~~~~~~~~Il~~~-~~~---~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~ 227 (364)
.........|..+++.+++++.+|+.++ ..+ ++.+.+.+.+.++.|.++...++..|+..++++.|+.++++++++
T Consensus 72 ~~~~~~~~~l~~~l~~~~~~~~lii~~~~~~~~~~k~~k~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~i~~~a~~~ 151 (172)
T PF06144_consen 72 KLKKKEIKALIEYLSNPPPDCILIIFSEEKLDKRKKLYKALKKQAIVIECKKPKEQELPRWIKERAKKNGLKIDPDAAQY 151 (172)
T ss_dssp -S-TTHHHHHHHHTTT--SSEEEEEEES-S--HHHHHHHHHTTTEEEEEE----TTTHHHHHHHHHHHTT-EE-HHHHHH
T ss_pred cccHHHHHHHHHHHhCCCCCEEEEEEeCCchhhhhhHHHHHhcccceEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 5666788999999999999999888887 333 466777788999999999999999999999999999999999999
Q ss_pred HHHHcCCCHHHHHHHHHHHHH
Q 017884 228 LVRLCNGDMRKALNILQSTHM 248 (364)
Q Consensus 228 l~~~~~g~~r~a~~~l~~~~~ 248 (364)
|++.+++|++.+.+.++++++
T Consensus 152 L~~~~~~d~~~l~~EleKL~L 172 (172)
T PF06144_consen 152 LIERVGNDLSLLQNELEKLSL 172 (172)
T ss_dssp HHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHhChHHHHHHHHHHHhcC
Confidence 999999999999999998763
No 198
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.33 E-value=1.4e-10 Score=103.51 Aligned_cols=176 Identities=18% Similarity=0.158 Sum_probs=108.9
Q ss_pred CCCCCcchhccHHHHHHHHHHHhcCCCCcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCCCChHHHHHH---
Q 017884 48 RPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQ--- 124 (364)
Q Consensus 48 ~p~~~~~~vg~~~~~~~l~~~~~~~~~~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--- 124 (364)
.|..-.+++-.+.....+..++..+ .+++|.||||+|||++++.+++.+. ..++.+++.......++...
T Consensus 40 ~p~~d~~y~f~~~~~~~vl~~l~~~--~~ilL~G~pGtGKTtla~~lA~~l~-----~~~~rV~~~~~l~~~DliG~~~~ 112 (327)
T TIGR01650 40 VPDIDPAYLFDKATTKAICAGFAYD--RRVMVQGYHGTGKSTHIEQIAARLN-----WPCVRVNLDSHVSRIDLVGKDAI 112 (327)
T ss_pred CCCCCCCccCCHHHHHHHHHHHhcC--CcEEEEeCCCChHHHHHHHHHHHHC-----CCeEEEEecCCCChhhcCCCcee
Confidence 3443345666667777777777554 4699999999999999999999983 34444444332211111100
Q ss_pred -H------HHHHhcCccccCCccceEEEEEeCCCCCCHHHHHHHHHHHHH--------------hccCccEEEEeeccc-
Q 017884 125 -I------QDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEK--------------YTKNTRFALICNQVN- 182 (364)
Q Consensus 125 -i------~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~--------------~~~~~~~Il~~~~~~- 182 (364)
+ ..+. ..++..+ ...+.++++||++...++.+..|..++|. +.+..++|.+.|...
T Consensus 113 ~l~~g~~~~~f~-~GpL~~A-~~~g~illlDEin~a~p~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~ 190 (327)
T TIGR01650 113 VLKDGKQITEFR-DGILPWA-LQHNVALCFDEYDAGRPDVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGL 190 (327)
T ss_pred eccCCcceeEEe-cCcchhH-HhCCeEEEechhhccCHHHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCc
Confidence 0 0000 0011000 01466899999999999999999999983 112455666666532
Q ss_pred -----------cCchhhhccce-EEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Q 017884 183 -----------KIIPALQSRCT-RFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLC 232 (364)
Q Consensus 183 -----------~l~~~l~sr~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~ 232 (364)
.+..+..+|+. ++.+..|+.++-.+++...+....-.-+++.++++++.+
T Consensus 191 Gd~~G~y~Gt~~l~~A~lDRF~i~~~~~Yp~~e~E~~Il~~~~~~~~~~~~~~i~~~mV~la 252 (327)
T TIGR01650 191 GDTTGLYHGTQQINQAQMDRWSIVTTLNYLEHDNEAAIVLAKAKGFDDTEGKDIINAMVRVA 252 (327)
T ss_pred CCCCcceeeeecCCHHHHhheeeEeeCCCCCHHHHHHHHHhhccCCCccchHHHHHHHHHHH
Confidence 46788999995 468988998888888876543211111345556665543
No 199
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.33 E-value=1.1e-10 Score=97.44 Aligned_cols=192 Identities=19% Similarity=0.238 Sum_probs=132.0
Q ss_pred hhccCCCCCcchhccHHHHHHHH----HHHhcCCCCcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCCCChH
Q 017884 44 VEKYRPQSLADVAAHRDIVDTID----RLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGID 119 (364)
Q Consensus 44 ~~~~~p~~~~~~vg~~~~~~~l~----~~~~~~~~~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 119 (364)
+..+.|..+.+++|-+...+.|. ..+++....|+|++|..|+||+++++++..++...+. ..++++..+.....
T Consensus 51 v~~~~~i~L~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~gl--rLVEV~k~dl~~Lp 128 (287)
T COG2607 51 VPDPDPIDLADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYADEGL--RLVEVDKEDLATLP 128 (287)
T ss_pred CCCCCCcCHHHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHHhcCC--eEEEEcHHHHhhHH
Confidence 44566678899999877777664 3444555566999999999999999999999876654 47888766544444
Q ss_pred HHHHHHHHHHhcCccccCCccceEEEEEeCCCCCCHH-HHHHHHHHHH----HhccCccEEEEeeccccCch--------
Q 017884 120 VVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKD-AQFALRRVIE----KYTKNTRFALICNQVNKIIP-------- 186 (364)
Q Consensus 120 ~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~-~~~~L~~~le----~~~~~~~~Il~~~~~~~l~~-------- 186 (364)
.+.+.++. .+ .+-||++|+.-.=..+ .-..|..+|+ ..|.++.|..++|..+.+..
T Consensus 129 ~l~~~Lr~----~~-------~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATSNRRHLl~e~~~dn~~~ 197 (287)
T COG2607 129 DLVELLRA----RP-------EKFILFCDDLSFEEGDDAYKALKSALEGGVEGRPANVLFYATSNRRHLLPEDMKDNEGS 197 (287)
T ss_pred HHHHHHhc----CC-------ceEEEEecCCCCCCCchHHHHHHHHhcCCcccCCCeEEEEEecCCcccccHhhhhCCCc
Confidence 44443332 22 3569999987555433 3445555554 45667766666664443321
Q ss_pred --------------hhhccc-eEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHH-----HHcCCCHHHHHHHHHHH
Q 017884 187 --------------ALQSRC-TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALV-----RLCNGDMRKALNILQST 246 (364)
Q Consensus 187 --------------~l~sr~-~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~-----~~~~g~~r~a~~~l~~~ 246 (364)
.+..|+ ..+.|.|++.++..+++..++++.++.++++.++.=+ ...+.+-|.|.+.++.+
T Consensus 198 ~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~~~~e~l~~eAl~WAt~rg~RSGR~A~QF~~~~ 277 (287)
T COG2607 198 TGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGLDISDEELHAEALQWATTRGGRSGRVAWQFIRDL 277 (287)
T ss_pred ccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCccHhHHHHHHHH
Confidence 233455 7799999999999999999999999999876654433 22356778888877766
Q ss_pred HH
Q 017884 247 HM 248 (364)
Q Consensus 247 ~~ 248 (364)
+.
T Consensus 278 ~g 279 (287)
T COG2607 278 AG 279 (287)
T ss_pred Hh
Confidence 54
No 200
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.32 E-value=1.1e-10 Score=115.64 Aligned_cols=211 Identities=13% Similarity=0.128 Sum_probs=128.7
Q ss_pred CcchhccHHHHHHHHHHHhcCCCCcEEEeCCCCccHHHHHHHHHHHHc-----------CCCC-----------------
Q 017884 52 LADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLY-----------GAQY----------------- 103 (364)
Q Consensus 52 ~~~~vg~~~~~~~l~~~~~~~~~~~lll~G~~G~GKt~la~~l~~~l~-----------~~~~----------------- 103 (364)
|.+++||+.++..|.-.+-.....+++|+|++|+|||++|+.+++.+. |...
T Consensus 3 f~~ivGq~~~~~al~~~av~~~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~~~~~~~~~~~~~~ 82 (633)
T TIGR02442 3 FTAIVGQEDLKLALLLNAVDPRIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEEWCEECRRKYRPSE 82 (633)
T ss_pred cchhcChHHHHHHHHHHhhCCCCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCccccChhhhhcccccc
Confidence 778999999999988888877777899999999999999999999872 1100
Q ss_pred --CCcEEEEeCCCC----CChHHHHHHHHHHHhcCccccCCccceEEEEEeCCCCCCHHHHHHHHHHHHHhc--------
Q 017884 104 --HNMILELNASDD----RGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYT-------- 169 (364)
Q Consensus 104 --~~~~~~~~~~~~----~~~~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~-------- 169 (364)
...++.+..... .+..++...+..-........-...++++++|||++.++...++.|+.+|++..
T Consensus 83 ~~~~pfv~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~L~~A~~GiL~lDEi~~l~~~~q~~Ll~~le~g~~~v~r~g~ 162 (633)
T TIGR02442 83 QRPVPFVNLPLGATEDRVVGSLDIERALREGEKAFQPGLLAEAHRGILYIDEVNLLDDHLVDVLLDAAAMGVNRVEREGL 162 (633)
T ss_pred cCCCCeeeCCCCCcHHHcCCcccHHHHhhcCCeeecCcceeecCCCeEEeChhhhCCHHHHHHHHHHHhcCCEEEEECCc
Confidence 112222222110 011111111111000000000012256799999999999999999999998642
Q ss_pred -----cCccEEEEeecc-ccCchhhhccc-eEEEecCCCh-HHHHHHHHHHH----------------------------
Q 017884 170 -----KNTRFALICNQV-NKIIPALQSRC-TRFRFAPLEP-VHVTERLKHVI---------------------------- 213 (364)
Q Consensus 170 -----~~~~~Il~~~~~-~~l~~~l~sr~-~~i~~~~~~~-~~~~~~l~~~~---------------------------- 213 (364)
..+.+|.++|.. ..+.+.|.+|+ ..+.+.++.. ++..+++....
T Consensus 163 ~~~~~~~~~lIat~np~eg~l~~~L~dR~~l~i~v~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ar 242 (633)
T TIGR02442 163 SVSHPARFVLIGTMNPEEGDLRPQLLDRFGLCVDVAAPRDPEERVEIIRRRLAFDADPEAFAARWAAEQEELRNRIARAR 242 (633)
T ss_pred eeeecCCeEEEEecCCCCCCCCHHHHhhcceEEEccCCCchHHHHHHHHHHHhhccCcHHHHHHhhhhHHHHHHHHHHHH
Confidence 234455555533 35778899998 4466665543 33333332210
Q ss_pred -HHcCCCCCHHHHHHHHHHc---CC-CHHHHHHHHHHHHHh-----cccCchHHHHHhc
Q 017884 214 -EAEGLDVTEGGLAALVRLC---NG-DMRKALNILQSTHMA-----SQQITEEAVYLCT 262 (364)
Q Consensus 214 -~~~~~~i~~~~~~~l~~~~---~g-~~r~a~~~l~~~~~~-----~~~i~~~~v~~~~ 262 (364)
....+.++++.+++|+..+ +- .+|..+..+..+... ...++.++|..++
T Consensus 243 ~~~~~V~is~~~~~~l~~~~~~~~i~s~Ra~i~~~r~Ara~AaL~gr~~V~~~Dv~~A~ 301 (633)
T TIGR02442 243 SLLPSVRISDSLIRFISELCIEFGVDGHRADIVMARAARALAALDGRRRVTAEDVREAA 301 (633)
T ss_pred HhCCCCCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCCCcCCHHHHHHHH
Confidence 0124678999988888776 21 367766666544322 2488888886643
No 201
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.31 E-value=3.7e-11 Score=101.77 Aligned_cols=168 Identities=24% Similarity=0.380 Sum_probs=115.1
Q ss_pred CCcchhccHHHHHHHHHHHhc-----------C-CCCc-EEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCC--
Q 017884 51 SLADVAAHRDIVDTIDRLTSE-----------N-RLPH-LLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDD-- 115 (364)
Q Consensus 51 ~~~~~vg~~~~~~~l~~~~~~-----------~-~~~~-lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~-- 115 (364)
+..++-|-.+.++.++..+.- | .+|. +++|||||+|||.+|+++++.- ...|+.+-++..
T Consensus 175 ty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrt-----dacfirvigselvq 249 (435)
T KOG0729|consen 175 TYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRT-----DACFIRVIGSELVQ 249 (435)
T ss_pred ccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhccc-----CceEEeehhHHHHH
Confidence 678888999999998887752 2 2233 9999999999999999999984 455666544321
Q ss_pred ----CChHHHHHHHHHHHhcCccccCCccceEEEEEeCCCCCC-----------HHHHHHHHHHHHH-----hccCccEE
Q 017884 116 ----RGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMT-----------KDAQFALRRVIEK-----YTKNTRFA 175 (364)
Q Consensus 116 ----~~~~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~-----------~~~~~~L~~~le~-----~~~~~~~I 175 (364)
.+...+++. .+. +...+.++|++||+|.+. .+.|..+++++.. +..+..++
T Consensus 250 kyvgegarmvrel-f~m--------artkkaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfdprgnikvl 320 (435)
T KOG0729|consen 250 KYVGEGARMVREL-FEM--------ARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVL 320 (435)
T ss_pred HHhhhhHHHHHHH-HHH--------hcccceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEE
Confidence 111222222 222 222257899999999984 3456666666654 34577899
Q ss_pred EEeeccccCchhhhccc---eEEEecCCChHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHcCC
Q 017884 176 LICNQVNKIIPALQSRC---TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGG-LAALVRLCNG 234 (364)
Q Consensus 176 l~~~~~~~l~~~l~sr~---~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~-~~~l~~~~~g 234 (364)
++||.++-++++|.+-+ ..++|.-|+.+-...+++-.++.. .++.+. .+.|+..|..
T Consensus 321 matnrpdtldpallrpgrldrkvef~lpdlegrt~i~kihaksm--sverdir~ellarlcpn 381 (435)
T KOG0729|consen 321 MATNRPDTLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSM--SVERDIRFELLARLCPN 381 (435)
T ss_pred eecCCCCCcCHhhcCCcccccceeccCCcccccceeEEEecccc--ccccchhHHHHHhhCCC
Confidence 99999999999998854 569999998888777776555533 334443 3556666643
No 202
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.29 E-value=3.2e-10 Score=107.39 Aligned_cols=212 Identities=19% Similarity=0.250 Sum_probs=141.2
Q ss_pred CCCCCcchhccHHHHHHHHHHHhc-----------C-CCC-cEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCC
Q 017884 48 RPQSLADVAAHRDIVDTIDRLTSE-----------N-RLP-HLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASD 114 (364)
Q Consensus 48 ~p~~~~~~vg~~~~~~~l~~~~~~-----------~-~~~-~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~ 114 (364)
.|.. +++.|-......++..+.. + ..| .+++|||||+|||.++++++++. ...++.++++.
T Consensus 180 ~~~~-~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~-----~a~~~~i~~pe 253 (693)
T KOG0730|consen 180 PEVG-DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEY-----GAFLFLINGPE 253 (693)
T ss_pred cccc-cccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHh-----CceeEecccHH
Confidence 4445 6677766666666665531 1 222 38999999999999999999996 45556666542
Q ss_pred C------CChHHHHHHHHHHHhcCccccCCccceEEEEEeCCCCCCH----------HHHHHHHHHHHHhc--cCccEEE
Q 017884 115 D------RGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTK----------DAQFALRRVIEKYT--KNTRFAL 176 (364)
Q Consensus 115 ~------~~~~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~~----------~~~~~L~~~le~~~--~~~~~Il 176 (364)
. .....++..++..... . .+.+++|||++.+.+ .....|+.+|+... ..++++.
T Consensus 254 li~k~~gEte~~LR~~f~~a~k~-----~---~psii~IdEld~l~p~r~~~~~~e~Rv~sqlltL~dg~~~~~~vivl~ 325 (693)
T KOG0730|consen 254 LISKFPGETESNLRKAFAEALKF-----Q---VPSIIFIDELDALCPKREGADDVESRVVSQLLTLLDGLKPDAKVIVLA 325 (693)
T ss_pred HHHhcccchHHHHHHHHHHHhcc-----C---CCeeEeHHhHhhhCCcccccchHHHHHHHHHHHHHhhCcCcCcEEEEE
Confidence 1 1222334444433322 1 167999999999974 23567888888876 5566677
Q ss_pred EeeccccCchhhhc-cc-eEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHH-HHHHHHHhcccC
Q 017884 177 ICNQVNKIIPALQS-RC-TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALN-ILQSTHMASQQI 253 (364)
Q Consensus 177 ~~~~~~~l~~~l~s-r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~a~~-~l~~~~~~~~~i 253 (364)
++|.++.+.+.+++ |+ ..+.+.-|+.....++++...+..+.. ++..+..++..++|-...-+. ++.........=
T Consensus 326 atnrp~sld~alRRgRfd~ev~IgiP~~~~RldIl~~l~k~~~~~-~~~~l~~iA~~thGyvGaDL~~l~~ea~~~~~r~ 404 (693)
T KOG0730|consen 326 ATNRPDSLDPALRRGRFDREVEIGIPGSDGRLDILRVLTKKMNLL-SDVDLEDIAVSTHGYVGADLAALCREASLQATRR 404 (693)
T ss_pred ecCCccccChhhhcCCCcceeeecCCCchhHHHHHHHHHHhcCCc-chhhHHHHHHHccchhHHHHHHHHHHHHHHHhhh
Confidence 77999999999997 77 679999999999999999999887766 677788899888776544333 223222222111
Q ss_pred chHHHHHhcCCCChHHHHHHH
Q 017884 254 TEEAVYLCTGNPLPKDIEQIS 274 (364)
Q Consensus 254 ~~~~v~~~~~~~~~~~~~~l~ 274 (364)
+.+++..+.....+..+.+.+
T Consensus 405 ~~~~~~~A~~~i~psa~Re~~ 425 (693)
T KOG0730|consen 405 TLEIFQEALMGIRPSALREIL 425 (693)
T ss_pred hHHHHHHHHhcCCchhhhhee
Confidence 555555555555544444443
No 203
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=99.27 E-value=2.1e-10 Score=115.21 Aligned_cols=198 Identities=15% Similarity=0.204 Sum_probs=129.3
Q ss_pred CCCcchhccHHHHHHHHHHHhcC--CCCcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCCCChHHHHHHHHH
Q 017884 50 QSLADVAAHRDIVDTIDRLTSEN--RLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQD 127 (364)
Q Consensus 50 ~~~~~~vg~~~~~~~l~~~~~~~--~~~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 127 (364)
..|++++|+...+..+.+.+..- ...+++|+|++|||||++|++++..-.. ....++.++|..... ..+...+..
T Consensus 373 ~~~~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s~r--~~~~~v~i~c~~~~~-~~~~~~lfg 449 (686)
T PRK15429 373 SEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGR--NNRRMVKMNCAAMPA-GLLESDLFG 449 (686)
T ss_pred ccccceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhcCC--CCCCeEEEecccCCh-hHhhhhhcC
Confidence 36889999988888877666532 2235999999999999999999887432 234667777765321 222221111
Q ss_pred HHhcC-------ccccCCccceEEEEEeCCCCCCHHHHHHHHHHHHHhc-----------cCccEEEEeeccc-------
Q 017884 128 FASTQ-------SFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYT-----------KNTRFALICNQVN------- 182 (364)
Q Consensus 128 ~~~~~-------~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~-----------~~~~~Il~~~~~~------- 182 (364)
..... ....-....+++++|||++.++...|..|++++++.. .++++|++++..-
T Consensus 450 ~~~~~~~g~~~~~~g~le~a~~GtL~Ldei~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~l~~~~~~~ 529 (686)
T PRK15429 450 HERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADR 529 (686)
T ss_pred cccccccccccchhhHHHhcCCCeEEEechhhCCHHHHHHHHHHHHhCCEEeCCCCCcccceEEEEEeCCCCHHHHHHcC
Confidence 00000 0000011246799999999999999999999998642 3567888875421
Q ss_pred cCchhhhccc--eEEEecCCCh--HHHHHHHH----HHHHHcCC---CCCHHHHHHHHHHc-CCCHHHHHHHHHHHHHhc
Q 017884 183 KIIPALQSRC--TRFRFAPLEP--VHVTERLK----HVIEAEGL---DVTEGGLAALVRLC-NGDMRKALNILQSTHMAS 250 (364)
Q Consensus 183 ~l~~~l~sr~--~~i~~~~~~~--~~~~~~l~----~~~~~~~~---~i~~~~~~~l~~~~-~g~~r~a~~~l~~~~~~~ 250 (364)
.+...+-.|. ..+.+||+.+ +++..++. +.+.+.+. .+++++++.|..+. .||+|.+.+.++.+....
T Consensus 530 ~f~~~L~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~~s~~al~~L~~y~WPGNvrEL~~~i~~a~~~~ 609 (686)
T PRK15429 530 EFRSDLYYRLNVFPIHLPPLRERPEDIPLLVKAFTFKIARRMGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLT 609 (686)
T ss_pred cccHHHHhccCeeEEeCCChhhhHhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCCCCcHHHHHHHHHHHHHhC
Confidence 2333344453 4577777765 44444443 33443342 47999999998775 999999999999887643
No 204
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.25 E-value=1.7e-10 Score=105.67 Aligned_cols=108 Identities=21% Similarity=0.371 Sum_probs=79.0
Q ss_pred ceEEEEEeCCCCCCH------------HHHHHHHHHHHHhc--------cCccEEEEe------eccccCchhhhccc-e
Q 017884 141 SVKLVLLDEADAMTK------------DAQFALRRVIEKYT--------KNTRFALIC------NQVNKIIPALQSRC-T 193 (364)
Q Consensus 141 ~~~viiiDe~~~l~~------------~~~~~L~~~le~~~--------~~~~~Il~~------~~~~~l~~~l~sr~-~ 193 (364)
..+||+|||+|.+.. ..|..|++++|... .+..++|++ ..++.+.|.+.-|+ .
T Consensus 249 ~~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~GR~Pi 328 (443)
T PRK05201 249 QNGIVFIDEIDKIAARGGSSGPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLIPELQGRFPI 328 (443)
T ss_pred cCCEEEEEcchhhcccCCCCCCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCCChhhccHHHhCccce
Confidence 577999999999952 36889999999632 233444444 34567899999998 7
Q ss_pred EEEecCCChHHHHHHHHH----H-------HHHcCC--CCCHHHHHHHHHHc--------CCCHHHHHHHHHHHHH
Q 017884 194 RFRFAPLEPVHVTERLKH----V-------IEAEGL--DVTEGGLAALVRLC--------NGDMRKALNILQSTHM 248 (364)
Q Consensus 194 ~i~~~~~~~~~~~~~l~~----~-------~~~~~~--~i~~~~~~~l~~~~--------~g~~r~a~~~l~~~~~ 248 (364)
++.+.+++.+++.++|.. . ++.+|+ .++++++..||+.+ +--.|.+...++++..
T Consensus 329 ~v~L~~L~~~dL~~ILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~LrtI~E~~L~ 404 (443)
T PRK05201 329 RVELDALTEEDFVRILTEPKASLIKQYQALLATEGVTLEFTDDAIRRIAEIAYQVNEKTENIGARRLHTVMEKLLE 404 (443)
T ss_pred EEECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEcHHHHHHHHHHHHHhcccccccchhhHHHHHHHHHH
Confidence 799999999999888833 2 233455 56899999999775 2346777777777654
No 205
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=99.25 E-value=2.9e-10 Score=104.60 Aligned_cols=203 Identities=16% Similarity=0.197 Sum_probs=134.6
Q ss_pred CCcchhccHHHHHHHHHHHhcCCC--CcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCCCChHHHHHHHHHH
Q 017884 51 SLADVAAHRDIVDTIDRLTSENRL--PHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDF 128 (364)
Q Consensus 51 ~~~~~vg~~~~~~~l~~~~~~~~~--~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 128 (364)
.+.++||+...+..+.+.+..-.. ..+||.|++|+||..+|+++.+.- .-....++.+||.... .......+...
T Consensus 221 ~~~~iIG~S~am~~ll~~i~~VA~Sd~tVLi~GETGtGKElvAraIH~~S--~R~~kPfV~~NCAAlP-esLlESELFGH 297 (550)
T COG3604 221 EVGGIIGRSPAMRQLLKEIEVVAKSDSTVLIRGETGTGKELVARAIHQLS--PRRDKPFVKLNCAALP-ESLLESELFGH 297 (550)
T ss_pred ccccceecCHHHHHHHHHHHHHhcCCCeEEEecCCCccHHHHHHHHHhhC--cccCCCceeeeccccc-hHHHHHHHhcc
Confidence 577899999999988887764322 238999999999999999998873 2334567888887632 12222222211
Q ss_pred Hhc--------CccccCCccceEEEEEeCCCCCCHHHHHHHHHHHHHh-----------ccCccEEEEeecc-------c
Q 017884 129 AST--------QSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKY-----------TKNTRFALICNQV-------N 182 (364)
Q Consensus 129 ~~~--------~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~-----------~~~~~~Il~~~~~-------~ 182 (364)
... .+-.| +.++++.+++||+..|+-..|..|++.+++. .-++++|.+||.. .
T Consensus 298 eKGAFTGA~~~r~GrF-ElAdGGTLFLDEIGelPL~lQaKLLRvLQegEieRvG~~r~ikVDVRiIAATNRDL~~~V~~G 376 (550)
T COG3604 298 EKGAFTGAINTRRGRF-ELADGGTLFLDEIGELPLALQAKLLRVLQEGEIERVGGDRTIKVDVRVIAATNRDLEEMVRDG 376 (550)
T ss_pred cccccccchhccCcce-eecCCCeEechhhccCCHHHHHHHHHHHhhcceeecCCCceeEEEEEEEeccchhHHHHHHcC
Confidence 110 00001 1135789999999999999999999999974 3467888888742 1
Q ss_pred cCchhhhccceE--EEecCCCh--HH---HHHH-HHHHHHHcC---CCCCHHHHHHHHHHc-CCCHHHHHHHHHHHHHhc
Q 017884 183 KIIPALQSRCTR--FRFAPLEP--VH---VTER-LKHVIEAEG---LDVTEGGLAALVRLC-NGDMRKALNILQSTHMAS 250 (364)
Q Consensus 183 ~l~~~l~sr~~~--i~~~~~~~--~~---~~~~-l~~~~~~~~---~~i~~~~~~~l~~~~-~g~~r~a~~~l~~~~~~~ 250 (364)
++-..|--|..+ +.+||+-+ ++ +..+ +.+...+.| ..+++++++.|..+. .||+|.+.|.++.++..+
T Consensus 377 ~FRaDLYyRLsV~Pl~lPPLRER~~DIplLA~~Fle~~~~~~gr~~l~ls~~Al~~L~~y~wPGNVRELen~veRavlla 456 (550)
T COG3604 377 EFRADLYYRLSVFPLELPPLRERPEDIPLLAGYFLEKFRRRLGRAILSLSAEALELLSSYEWPGNVRELENVVERAVLLA 456 (550)
T ss_pred cchhhhhhcccccccCCCCcccCCccHHHHHHHHHHHHHHhcCCcccccCHHHHHHHHcCCCCCcHHHHHHHHHHHHHHh
Confidence 334444455544 45555544 22 2333 333333334 478999999999875 899999999999888755
Q ss_pred -ccCchHH
Q 017884 251 -QQITEEA 257 (364)
Q Consensus 251 -~~i~~~~ 257 (364)
..++.++
T Consensus 457 ~~~~~~~d 464 (550)
T COG3604 457 GRLTRRGD 464 (550)
T ss_pred cccCCCcc
Confidence 3444344
No 206
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=99.25 E-value=2.1e-09 Score=94.40 Aligned_cols=204 Identities=15% Similarity=0.162 Sum_probs=126.7
Q ss_pred HHHHHHHHHHHh---cCCCCcEEEeCCCCccHHHHHHHHHHHHcCCC----CCCcEEEEeCCCCCChHHHHHHHHHHHhc
Q 017884 59 RDIVDTIDRLTS---ENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ----YHNMILELNASDDRGIDVVRQQIQDFAST 131 (364)
Q Consensus 59 ~~~~~~l~~~~~---~~~~~~lll~G~~G~GKt~la~~l~~~l~~~~----~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 131 (364)
..+++.|...+. ..++|+++|+|++|.|||++++.+.+...... ....++.+......+...+...|-.....
T Consensus 43 ~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lga 122 (302)
T PF05621_consen 43 KEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGA 122 (302)
T ss_pred HHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCc
Confidence 344555666565 44778899999999999999999998753211 12235555544433333332222211111
Q ss_pred CccccC-------------CccceEEEEEeCCCCCC---HHHHHHHHHHHHHhccC--ccEEEEeec----cccCchhhh
Q 017884 132 QSFSFG-------------VKASVKLVLLDEADAMT---KDAQFALRRVIEKYTKN--TRFALICNQ----VNKIIPALQ 189 (364)
Q Consensus 132 ~~~~~~-------------~~~~~~viiiDe~~~l~---~~~~~~L~~~le~~~~~--~~~Il~~~~----~~~l~~~l~ 189 (364)
....-. ..-+.+++||||+|.+. ...|..++..+...... ..+|.++.. .-.-++.+.
T Consensus 123 P~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A~~al~~D~QLa 202 (302)
T PF05621_consen 123 PYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTREAYRALRTDPQLA 202 (302)
T ss_pred ccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHHHHHHhccCHHHH
Confidence 000000 00157899999999973 34466666666665543 345555532 124568999
Q ss_pred ccceEEEecCCCh-HHHHHHHHHHHHHc-----CCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhc-----ccCchHHH
Q 017884 190 SRCTRFRFAPLEP-VHVTERLKHVIEAE-----GLDVTEGGLAALVRLCNGDMRKALNILQSTHMAS-----QQITEEAV 258 (364)
Q Consensus 190 sr~~~i~~~~~~~-~~~~~~l~~~~~~~-----~~~i~~~~~~~l~~~~~g~~r~a~~~l~~~~~~~-----~~i~~~~v 258 (364)
+|+..+.+++... ++....+...-..- ..--+++.+..|...++|.++....++..++..+ +.||.+.+
T Consensus 203 ~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l~~ll~~aA~~AI~sG~E~It~~~l 282 (302)
T PF05621_consen 203 SRFEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGELSRLLNAAAIAAIRSGEERITREIL 282 (302)
T ss_pred hccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhcCCceecHHHH
Confidence 9999999988875 45666665544322 1123567779999999999999999887776543 47888888
Q ss_pred HHhc
Q 017884 259 YLCT 262 (364)
Q Consensus 259 ~~~~ 262 (364)
..+-
T Consensus 283 ~~~~ 286 (302)
T PF05621_consen 283 DKID 286 (302)
T ss_pred hhCC
Confidence 7653
No 207
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=99.25 E-value=1.4e-09 Score=104.23 Aligned_cols=205 Identities=19% Similarity=0.193 Sum_probs=134.2
Q ss_pred CCcchhccHHHHHHHHHHHhcC--CCCcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCCCChHHHHHHHHHH
Q 017884 51 SLADVAAHRDIVDTIDRLTSEN--RLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDF 128 (364)
Q Consensus 51 ~~~~~vg~~~~~~~l~~~~~~~--~~~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 128 (364)
.+..++|....+..+...+..- ...+++++|++|+||+++|+.+...-.. ....++.+++..... ..+...+...
T Consensus 137 ~~~~lig~s~~~~~l~~~i~~~a~~~~~vli~Ge~GtGK~~lA~~ih~~s~~--~~~~~v~v~c~~~~~-~~~~~~lfg~ 213 (445)
T TIGR02915 137 ALRGLITSSPGMQKICRTIEKIAPSDITVLLLGESGTGKEVLARALHQLSDR--KDKRFVAINCAAIPE-NLLESELFGY 213 (445)
T ss_pred cccceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhCCc--CCCCeEEEECCCCCh-HHHHHHhcCC
Confidence 4567888877777776666532 2334899999999999999999876432 234567778776422 2222222111
Q ss_pred Hhc-------CccccCCccceEEEEEeCCCCCCHHHHHHHHHHHHHhc-----------cCccEEEEeecc-------cc
Q 017884 129 AST-------QSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYT-----------KNTRFALICNQV-------NK 183 (364)
Q Consensus 129 ~~~-------~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~-----------~~~~~Il~~~~~-------~~ 183 (364)
... .....-...++++++|||++.|+...|..|++++++.. .++++|++++.. ..
T Consensus 214 ~~~~~~~~~~~~~g~~~~a~~gtl~l~~i~~l~~~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~ 293 (445)
T TIGR02915 214 EKGAFTGAVKQTLGKIEYAHGGTLFLDEIGDLPLNLQAKLLRFLQERVIERLGGREEIPVDVRIVCATNQDLKRMIAEGT 293 (445)
T ss_pred CCCCcCCCccCCCCceeECCCCEEEEechhhCCHHHHHHHHHHHhhCeEEeCCCCceeeeceEEEEecCCCHHHHHHcCC
Confidence 000 00000112357899999999999999999999998642 256788887543 23
Q ss_pred Cchhhhccc--eEEEecCCCh--HHHHHH----HHHHHHHcC---CCCCHHHHHHHHHHc-CCCHHHHHHHHHHHHHhc-
Q 017884 184 IIPALQSRC--TRFRFAPLEP--VHVTER----LKHVIEAEG---LDVTEGGLAALVRLC-NGDMRKALNILQSTHMAS- 250 (364)
Q Consensus 184 l~~~l~sr~--~~i~~~~~~~--~~~~~~----l~~~~~~~~---~~i~~~~~~~l~~~~-~g~~r~a~~~l~~~~~~~- 250 (364)
+.+.|..|+ ..+.+||+.+ +++..+ +...+.+.+ ..+++++++.|..+. .||+|.+.+.++.++..+
T Consensus 294 ~~~~L~~~l~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNvreL~~~i~~a~~~~~ 373 (445)
T TIGR02915 294 FREDLFYRIAEISITIPPLRSRDGDAVLLANAFLERFARELKRKTKGFTDDALRALEAHAWPGNVRELENKVKRAVIMAE 373 (445)
T ss_pred ccHHHHHHhccceecCCCchhchhhHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHhCCCCChHHHHHHHHHHHHHhCC
Confidence 445555664 4577777765 343333 333343333 468999999999876 999999999999887644
Q ss_pred -ccCchHHH
Q 017884 251 -QQITEEAV 258 (364)
Q Consensus 251 -~~i~~~~v 258 (364)
..|+.+++
T Consensus 374 ~~~i~~~~l 382 (445)
T TIGR02915 374 GNQITAEDL 382 (445)
T ss_pred CCcccHHHc
Confidence 35776665
No 208
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.23 E-value=1.8e-10 Score=105.60 Aligned_cols=108 Identities=22% Similarity=0.388 Sum_probs=78.7
Q ss_pred ceEEEEEeCCCCCCH------------HHHHHHHHHHHHhc--------cCccEEEEe------eccccCchhhhccc-e
Q 017884 141 SVKLVLLDEADAMTK------------DAQFALRRVIEKYT--------KNTRFALIC------NQVNKIIPALQSRC-T 193 (364)
Q Consensus 141 ~~~viiiDe~~~l~~------------~~~~~L~~~le~~~--------~~~~~Il~~------~~~~~l~~~l~sr~-~ 193 (364)
..+||+|||+|++.. ..|..|++++|... .+..+.|++ ..+..+.|.+.-|+ .
T Consensus 247 ~~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~DlIPEl~GR~Pi 326 (441)
T TIGR00390 247 QSGIIFIDEIDKIAKKGESSGADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPSDLIPELQGRFPI 326 (441)
T ss_pred cCCEEEEEchhhhcccCCCCCCCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCCChhhccHHHhCccce
Confidence 577999999999962 36899999999632 223344444 24567899999998 7
Q ss_pred EEEecCCChHHHHHHHHH----H-------HHHcCC--CCCHHHHHHHHHHc--------CCCHHHHHHHHHHHHH
Q 017884 194 RFRFAPLEPVHVTERLKH----V-------IEAEGL--DVTEGGLAALVRLC--------NGDMRKALNILQSTHM 248 (364)
Q Consensus 194 ~i~~~~~~~~~~~~~l~~----~-------~~~~~~--~i~~~~~~~l~~~~--------~g~~r~a~~~l~~~~~ 248 (364)
++.+.+++.+++..+|.. . ++.+|+ .++++++..||+.+ +--.|.+...++.+..
T Consensus 327 ~v~L~~L~~edL~rILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~LrtilE~~l~ 402 (441)
T TIGR00390 327 RVELQALTTDDFERILTEPKNSLIKQYKALMKTEGVNIEFSDEAIKRIAELAYNVNEKTENIGARRLHTVLERLLE 402 (441)
T ss_pred EEECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEeHHHHHHHHHHHHHhcccccccchhhHHHHHHHHHH
Confidence 799999999999888732 2 234454 56899999999875 3347777777776654
No 209
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=99.21 E-value=2.6e-09 Score=103.05 Aligned_cols=206 Identities=20% Similarity=0.217 Sum_probs=135.4
Q ss_pred CCcchhccHHHHHHHHHHHhcCC--CCcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCCCChHHHHHHHHHH
Q 017884 51 SLADVAAHRDIVDTIDRLTSENR--LPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDF 128 (364)
Q Consensus 51 ~~~~~vg~~~~~~~l~~~~~~~~--~~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 128 (364)
.+.+++|....+..+...+.... ..+++++|++|+||+++|++++..... ....++.+++.... .+.+...+...
T Consensus 136 ~~~~lig~s~~~~~l~~~~~~~~~~~~~vli~Ge~GtGK~~lA~~ih~~s~~--~~~~~i~i~c~~~~-~~~~~~~lfg~ 212 (469)
T PRK10923 136 PTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRHSPR--AKAPFIALNMAAIP-KDLIESELFGH 212 (469)
T ss_pred ccccceecCHHHHHHHHHHHHHhccCCeEEEEeCCCCcHHHHHHHHHhcCCC--CCCCeEeeeCCCCC-HHHHHHHhcCC
Confidence 46678898777777666655322 233899999999999999999887432 23566778876642 22223222111
Q ss_pred HhcC-------ccccCCccceEEEEEeCCCCCCHHHHHHHHHHHHHhc-----------cCccEEEEeecc-------cc
Q 017884 129 ASTQ-------SFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYT-----------KNTRFALICNQV-------NK 183 (364)
Q Consensus 129 ~~~~-------~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~-----------~~~~~Il~~~~~-------~~ 183 (364)
.... ....-....++.++|||++.|+...|..|++++++.. .++++|++++.. ..
T Consensus 213 ~~g~~~~~~~~~~g~~~~a~~Gtl~l~~i~~l~~~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~ 292 (469)
T PRK10923 213 EKGAFTGANTIRQGRFEQADGGTLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGK 292 (469)
T ss_pred CCCCCCCCCcCCCCCeeECCCCEEEEeccccCCHHHHHHHHHHHhcCcEEeCCCCCeEEeeEEEEEeCCCCHHHHHHcCC
Confidence 1000 0000111246789999999999999999999998642 245788887532 24
Q ss_pred Cchhhhccc--eEEEecCCCh--HHHHHHHHHH----HHHcCC---CCCHHHHHHHHHHc-CCCHHHHHHHHHHHHHhc-
Q 017884 184 IIPALQSRC--TRFRFAPLEP--VHVTERLKHV----IEAEGL---DVTEGGLAALVRLC-NGDMRKALNILQSTHMAS- 250 (364)
Q Consensus 184 l~~~l~sr~--~~i~~~~~~~--~~~~~~l~~~----~~~~~~---~i~~~~~~~l~~~~-~g~~r~a~~~l~~~~~~~- 250 (364)
+.+.+..|+ ..+.+||+.+ +++..++... +...+. .+++++++.|..+. .||+|.+.+.++.+....
T Consensus 293 ~~~~L~~~l~~~~i~~PpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNv~eL~~~i~~~~~~~~ 372 (469)
T PRK10923 293 FREDLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLENTCRWLTVMAA 372 (469)
T ss_pred chHHHHHHhcceeecCCCcccchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHhCC
Confidence 556666775 5677777765 4444444433 333332 58999999999885 999999999998887643
Q ss_pred -ccCchHHHH
Q 017884 251 -QQITEEAVY 259 (364)
Q Consensus 251 -~~i~~~~v~ 259 (364)
..|+.+++.
T Consensus 373 ~~~i~~~~l~ 382 (469)
T PRK10923 373 GQEVLIQDLP 382 (469)
T ss_pred CCcccHHHCc
Confidence 367777763
No 210
>PRK15115 response regulator GlrR; Provisional
Probab=99.19 E-value=6.4e-09 Score=99.64 Aligned_cols=204 Identities=15% Similarity=0.171 Sum_probs=127.0
Q ss_pred chhccHHHHHHHHHHHhc--CCCCcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCCCChHHHHHHHHHHHhc
Q 017884 54 DVAAHRDIVDTIDRLTSE--NRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFAST 131 (364)
Q Consensus 54 ~~vg~~~~~~~l~~~~~~--~~~~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 131 (364)
.++|....+..+...+.. ...++++++|++|+||+++|+.+.+.-.. ....++.+++.... .+.+...+......
T Consensus 135 ~lig~s~~~~~~~~~~~~~a~~~~~vli~Ge~GtGk~~lA~~ih~~s~r--~~~~f~~i~c~~~~-~~~~~~~lfg~~~~ 211 (444)
T PRK15115 135 AIVTRSPLMLRLLEQARMVAQSDVSVLINGQSGTGKEILAQAIHNASPR--ASKPFIAINCGALP-EQLLESELFGHARG 211 (444)
T ss_pred cccccCHHHHHHHHHHHhhccCCCeEEEEcCCcchHHHHHHHHHHhcCC--CCCCeEEEeCCCCC-HHHHHHHhcCCCcC
Confidence 356655555444433322 12245899999999999999999887432 23457788877642 22222222211100
Q ss_pred C-------ccccCCccceEEEEEeCCCCCCHHHHHHHHHHHHHhc-----------cCccEEEEeecc-------ccCch
Q 017884 132 Q-------SFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYT-----------KNTRFALICNQV-------NKIIP 186 (364)
Q Consensus 132 ~-------~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~-----------~~~~~Il~~~~~-------~~l~~ 186 (364)
. ....-....+++++|||++.|+...|..|++++++.. .++++|++++.. ..+.+
T Consensus 212 ~~~~~~~~~~g~~~~a~~gtl~l~~i~~l~~~~q~~L~~~l~~~~~~~~g~~~~~~~~~rii~~~~~~l~~~~~~~~f~~ 291 (444)
T PRK15115 212 AFTGAVSNREGLFQAAEGGTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHRDLPKAMARGEFRE 291 (444)
T ss_pred CCCCCccCCCCcEEECCCCEEEEEccccCCHHHHHHHHHHHhhCCEEeCCCCceeeeeEEEEEeCCCCHHHHHHcCCccH
Confidence 0 0001112246799999999999999999999998642 255777777532 12333
Q ss_pred hhhccc--eEEEecCCCh--HHHHHHHHHH----HHHcC---CCCCHHHHHHHHHHc-CCCHHHHHHHHHHHHHhc--cc
Q 017884 187 ALQSRC--TRFRFAPLEP--VHVTERLKHV----IEAEG---LDVTEGGLAALVRLC-NGDMRKALNILQSTHMAS--QQ 252 (364)
Q Consensus 187 ~l~sr~--~~i~~~~~~~--~~~~~~l~~~----~~~~~---~~i~~~~~~~l~~~~-~g~~r~a~~~l~~~~~~~--~~ 252 (364)
.+..|. ..+.+||+.+ +++..++... +...+ ..+++++++.|..+. +||+|.+.+.++.++... ..
T Consensus 292 ~l~~~l~~~~i~lPpLr~R~eDi~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~WpgNvreL~~~i~~~~~~~~~~~ 371 (444)
T PRK15115 292 DLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVIEQCVALTSSPV 371 (444)
T ss_pred HHHHhhceeeecCCChHhccccHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHhCCCCc
Confidence 444443 4466667664 3454343333 33333 258999999999987 999999999999877543 36
Q ss_pred CchHHHHH
Q 017884 253 ITEEAVYL 260 (364)
Q Consensus 253 i~~~~v~~ 260 (364)
|+.+++..
T Consensus 372 i~~~~l~~ 379 (444)
T PRK15115 372 ISDALVEQ 379 (444)
T ss_pred cChhhhhh
Confidence 77777654
No 211
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=99.18 E-value=7.2e-11 Score=98.29 Aligned_cols=114 Identities=23% Similarity=0.228 Sum_probs=67.7
Q ss_pred CCcchhccHHHHHHHHHHHhcCCCCcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeC----------------CC
Q 017884 51 SLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNA----------------SD 114 (364)
Q Consensus 51 ~~~~~vg~~~~~~~l~~~~~~~~~~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~----------------~~ 114 (364)
.|.+++||+..+..+.-...++ .|++++||||+|||++|+.+..-+..-.. ...+++.. ..
T Consensus 1 Df~dI~GQe~aKrAL~iAAaG~--h~lLl~GppGtGKTmlA~~l~~lLP~l~~-~e~le~~~i~s~~~~~~~~~~~~~~P 77 (206)
T PF01078_consen 1 DFSDIVGQEEAKRALEIAAAGG--HHLLLIGPPGTGKTMLARRLPSLLPPLTE-EEALEVSKIYSVAGLGPDEGLIRQRP 77 (206)
T ss_dssp -TCCSSSTHHHHHHHHHHHHCC----EEEES-CCCTHHHHHHHHHHCS--CCE-ECCESS--S-TT---S---EEEE---
T ss_pred ChhhhcCcHHHHHHHHHHHcCC--CCeEEECCCCCCHHHHHHHHHHhCCCCch-HHHhhhccccccccCCCCCceecCCC
Confidence 4889999999999998888875 57999999999999999999976532110 00000000 00
Q ss_pred CC---ChHHHHHHHHHHHhcCccccCCccceEEEEEeCCCCCCHHHHHHHHHHHHHh
Q 017884 115 DR---GIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKY 168 (364)
Q Consensus 115 ~~---~~~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~ 168 (364)
.. ........+..-... ....-..++++|+++||+..+.+...+.|+..|++.
T Consensus 78 fr~phhs~s~~~liGgg~~~-~PGeislAh~GVLflDE~~ef~~~vld~Lr~ple~g 133 (206)
T PF01078_consen 78 FRAPHHSASEAALIGGGRPP-RPGEISLAHRGVLFLDELNEFDRSVLDALRQPLEDG 133 (206)
T ss_dssp EEEE-TT--HHHHHEEGGGE-EE-CGGGGTTSEEEECETTTS-HHHHHHHHHHHHHS
T ss_pred cccCCCCcCHHHHhCCCcCC-CcCHHHHhcCCEEEechhhhcCHHHHHHHHHHHHCC
Confidence 00 000111111111110 000111246889999999999999999999999973
No 212
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=7.3e-10 Score=110.97 Aligned_cols=186 Identities=18% Similarity=0.185 Sum_probs=131.8
Q ss_pred CCCcchhccHHHHHHHHHHHhc------------CCCCc-EEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCC-
Q 017884 50 QSLADVAAHRDIVDTIDRLTSE------------NRLPH-LLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDD- 115 (364)
Q Consensus 50 ~~~~~~vg~~~~~~~l~~~~~~------------~~~~~-lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~- 115 (364)
.+|+++-|-+.++..|++.+-. -..|. ++++||||+|||..|++++..+...+....+..-.+.+-
T Consensus 262 v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkgaD~l 341 (1080)
T KOG0732|consen 262 VGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGADCL 341 (1080)
T ss_pred cCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcCchhh
Confidence 4799999999999999888742 12333 999999999999999999998754433332222222221
Q ss_pred -----CChHHHHHHHHHHHhcCccccCCccceEEEEEeCCCCCCH-----------HHHHHHHHHHHHhccCcc--EEEE
Q 017884 116 -----RGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTK-----------DAQFALRRVIEKYTKNTR--FALI 177 (364)
Q Consensus 116 -----~~~~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~~-----------~~~~~L~~~le~~~~~~~--~Il~ 177 (364)
....+.+-..+++... .+.||++||+|-+.+ .....|+.+|+..+.... +|-+
T Consensus 342 skwvgEaERqlrllFeeA~k~---------qPSIIffdeIdGlapvrSskqEqih~SIvSTLLaLmdGldsRgqVvvigA 412 (1080)
T KOG0732|consen 342 SKWVGEAERQLRLLFEEAQKT---------QPSIIFFDEIDGLAPVRSSKQEQIHASIVSTLLALMDGLDSRGQVVVIGA 412 (1080)
T ss_pred ccccCcHHHHHHHHHHHHhcc---------CceEEeccccccccccccchHHHhhhhHHHHHHHhccCCCCCCceEEEcc
Confidence 1112333333333222 367999999997742 124568888888776555 4455
Q ss_pred eeccccCchhhhccc---eEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Q 017884 178 CNQVNKIIPALQSRC---TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQ 244 (364)
Q Consensus 178 ~~~~~~l~~~l~sr~---~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~a~~~l~ 244 (364)
||.++.+++++++.+ ..+.|+-|+.+...+++.-.-.+....++......|++.+.|-.+.-+..|.
T Consensus 413 TnRpda~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~t~gy~gaDlkaLC 482 (1080)
T KOG0732|consen 413 TNRPDAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPISRELLLWLAEETSGYGGADLKALC 482 (1080)
T ss_pred cCCccccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCCHHHHHHHHHhccccchHHHHHHH
Confidence 689999999998864 5688998989999999888877777889999999999998776666555543
No 213
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=99.17 E-value=2e-09 Score=105.62 Aligned_cols=123 Identities=16% Similarity=0.181 Sum_probs=84.1
Q ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHHHh---------------------ccCccEEEEeecc--ccCchhhhccce---E
Q 017884 141 SVKLVLLDEADAMTKDAQFALRRVIEKY---------------------TKNTRFALICNQV--NKIIPALQSRCT---R 194 (364)
Q Consensus 141 ~~~viiiDe~~~l~~~~~~~L~~~le~~---------------------~~~~~~Il~~~~~--~~l~~~l~sr~~---~ 194 (364)
++++++|||++.|+...|..|+++|++. +.++++|++++.. ..+.+++.+|+. +
T Consensus 217 ngGtL~Ldei~~L~~~~q~~Ll~~L~~~~i~~~g~~e~~~~~~~~~~~ip~dvrvIa~~~~~~l~~l~~~l~~rf~~y~v 296 (608)
T TIGR00764 217 HKGVLYIDEIKTMPLEVQQYLLTALQDKKFPITGQSENSSGAMVRTEPVPCDFILVASGNLDDLEGMHPALRSRIRGYGY 296 (608)
T ss_pred CCCEEEEEChHhCCHHHHHHHHHHHHhCcEEecCccccccccccCCCCCccceEEEEECCHHHHhhcCHHHHHHhcCCeE
Confidence 4679999999999999999999999752 1245677777653 578899999976 2
Q ss_pred -EEecC---CChHH---HHHHHHHHHHHcC--CCCCHHHHHHHHHHc----------CCCHHHHHHHHHHHHHh-----c
Q 017884 195 -FRFAP---LEPVH---VTERLKHVIEAEG--LDVTEGGLAALVRLC----------NGDMRKALNILQSTHMA-----S 250 (364)
Q Consensus 195 -i~~~~---~~~~~---~~~~l~~~~~~~~--~~i~~~~~~~l~~~~----------~g~~r~a~~~l~~~~~~-----~ 250 (364)
+.|.. .+.+. +..++.+.+++.| ..++++++..|.+++ ..+.|.+-++++.+... .
T Consensus 297 ~v~~~~~~~~~~e~~~~~~~~i~~~~~r~G~l~~~s~~Av~~Li~~~~R~ag~r~~lsl~~R~L~~llR~A~~iA~~~~~ 376 (608)
T TIGR00764 297 EVYMKDTMPDTPENRDKLVQFVAQEVKKDGRIPHFTRDAVEEIVREAQRRAGRKDHLTLRLRELGGLVRAAGDIAKSSGK 376 (608)
T ss_pred EEEeeccCCCCHHHHHHHHHHHHHHHHHhCCCCcCCHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHhcCC
Confidence 44433 23333 4555666666553 368999999998543 13577777777655321 2
Q ss_pred ccCchHHHHHhcC
Q 017884 251 QQITEEAVYLCTG 263 (364)
Q Consensus 251 ~~i~~~~v~~~~~ 263 (364)
..|+.++|.+++.
T Consensus 377 ~~I~~ehV~~Ai~ 389 (608)
T TIGR00764 377 VYVTAEHVLKAKK 389 (608)
T ss_pred ceecHHHHHHHHH
Confidence 4788888876543
No 214
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=99.17 E-value=8.8e-10 Score=102.23 Aligned_cols=151 Identities=19% Similarity=0.249 Sum_probs=95.5
Q ss_pred CcchhccHHHHHHHHHHHhcCCCCcEEEeCCCCccHHHHHHHHHHHHcCCCC--CCcEEEEeCCCC----------C--C
Q 017884 52 LADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQY--HNMILELNASDD----------R--G 117 (364)
Q Consensus 52 ~~~~vg~~~~~~~l~~~~~~~~~~~lll~G~~G~GKt~la~~l~~~l~~~~~--~~~~~~~~~~~~----------~--~ 117 (364)
++++++.+.....+...+..+ .+++|+||||+|||++|+.++..+..... ....+.+..... . +
T Consensus 174 l~d~~i~e~~le~l~~~L~~~--~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP~~vg 251 (459)
T PRK11331 174 LNDLFIPETTIETILKRLTIK--KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRPNGVG 251 (459)
T ss_pred hhcccCCHHHHHHHHHHHhcC--CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCCCCCC
Confidence 677888888888888888765 57999999999999999999998854321 112222221110 0 0
Q ss_pred h----HHHHHHHHHHHhcCccccCCccceEEEEEeCCCCCCHH-HHHHHHHHHHH----------------------hcc
Q 017884 118 I----DVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKD-AQFALRRVIEK----------------------YTK 170 (364)
Q Consensus 118 ~----~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~-~~~~L~~~le~----------------------~~~ 170 (364)
. ..+.+........ + ..+.++||||+++...+ ....++.+|+. .|.
T Consensus 252 y~~~~G~f~~~~~~A~~~-p------~~~~vliIDEINRani~kiFGel~~lLE~~~rg~~~~v~l~y~e~d~e~f~iP~ 324 (459)
T PRK11331 252 FRRKDGIFYNFCQQAKEQ-P------EKKYVFIIDEINRANLSKVFGEVMMLMEHDKRGENWSVPLTYSENDEERFYVPE 324 (459)
T ss_pred eEecCchHHHHHHHHHhc-c------cCCcEEEEehhhccCHHHhhhhhhhhccccccccccceeeeccccccccccCCC
Confidence 0 0111112221111 1 14679999999999744 35555665552 234
Q ss_pred CccEEEEeeccc----cCchhhhccceEEEecC-CChHHHHHHHHH
Q 017884 171 NTRFALICNQVN----KIIPALQSRCTRFRFAP-LEPVHVTERLKH 211 (364)
Q Consensus 171 ~~~~Il~~~~~~----~l~~~l~sr~~~i~~~~-~~~~~~~~~l~~ 211 (364)
++.+|.+.|..+ .++.++++|+..+++.| ++...+.+++..
T Consensus 325 Nl~IIgTMNt~Drs~~~lD~AlrRRF~fi~i~p~~~~~~~~~~l~~ 370 (459)
T PRK11331 325 NVYIIGLMNTADRSLAVVDYALRRRFSFIDIEPGFDTPQFRNFLLN 370 (459)
T ss_pred CeEEEEecCccccchhhccHHHHhhhheEEecCCCChHHHHHHHHh
Confidence 566666766555 57889999999999877 344556666543
No 215
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=99.15 E-value=8.2e-09 Score=99.33 Aligned_cols=205 Identities=16% Similarity=0.188 Sum_probs=128.4
Q ss_pred CcchhccHHHHHHHHHHHhcC--CCCcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCCCChHHHHHHHHHHH
Q 017884 52 LADVAAHRDIVDTIDRLTSEN--RLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFA 129 (364)
Q Consensus 52 ~~~~vg~~~~~~~l~~~~~~~--~~~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 129 (364)
+..++|.......+...+... ...+++++|++|+||+++|+.+..... .....++.+++.... ...+...+....
T Consensus 142 ~~~ii~~S~~~~~~~~~~~~~a~~~~~vli~Ge~GtGK~~lA~~ih~~s~--~~~~~~~~i~c~~~~-~~~~~~~lfg~~ 218 (457)
T PRK11361 142 WGHILTNSPAMMDICKDTAKIALSQASVLISGESGTGKELIARAIHYNSR--RAKGPFIKVNCAALP-ESLLESELFGHE 218 (457)
T ss_pred ccceecccHHHhHHHHHHHHHcCCCcEEEEEcCCCccHHHHHHHHHHhCC--CCCCCeEEEECCCCC-HHHHHHHhcCCC
Confidence 445777665555555554332 223489999999999999999988643 233456777776642 222222221100
Q ss_pred hcC-------ccccCCccceEEEEEeCCCCCCHHHHHHHHHHHHHhc-----------cCccEEEEeeccc-------cC
Q 017884 130 STQ-------SFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYT-----------KNTRFALICNQVN-------KI 184 (364)
Q Consensus 130 ~~~-------~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~-----------~~~~~Il~~~~~~-------~l 184 (364)
... ....-....+++++|||++.|+...|..|+.++++.. .++++|++++..- .+
T Consensus 219 ~~~~~~~~~~~~g~~~~a~~gtl~ld~i~~l~~~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~l~~~~~~g~~ 298 (457)
T PRK11361 219 KGAFTGAQTLRQGLFERANEGTLLLDEIGEMPLVLQAKLLRILQEREFERIGGHQTIKVDIRIIAATNRDLQAMVKEGTF 298 (457)
T ss_pred CCCCCCCCCCCCCceEECCCCEEEEechhhCCHHHHHHHHHHHhcCcEEeCCCCceeeeceEEEEeCCCCHHHHHHcCCc
Confidence 000 0000111246799999999999999999999998632 3467888876431 34
Q ss_pred chhhhccc--eEEEecCCCh--HHHHHH----HHHHHHHcC---CCCCHHHHHHHHHHc-CCCHHHHHHHHHHHHHhc--
Q 017884 185 IPALQSRC--TRFRFAPLEP--VHVTER----LKHVIEAEG---LDVTEGGLAALVRLC-NGDMRKALNILQSTHMAS-- 250 (364)
Q Consensus 185 ~~~l~sr~--~~i~~~~~~~--~~~~~~----l~~~~~~~~---~~i~~~~~~~l~~~~-~g~~r~a~~~l~~~~~~~-- 250 (364)
.+.+-.|. ..+.++|+.+ +++..+ +.......+ ..+++++++.|..+. .||+|.+.+.++.+....
T Consensus 299 ~~~l~~~l~~~~i~~ppLreR~~di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNv~eL~~~~~~~~~~~~~ 378 (457)
T PRK11361 299 REDLFYRLNVIHLILPPLRDRREDISLLANHFLQKFSSENQRDIIDIDPMAMSLLTAWSWPGNIRELSNVIERAVVMNSG 378 (457)
T ss_pred hHHHHHHhccceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHcCCCCCcHHHHHHHHHHHHHhCCC
Confidence 44455554 4566667664 344433 333333323 468999999999876 999999999998877544
Q ss_pred ccCchHHHH
Q 017884 251 QQITEEAVY 259 (364)
Q Consensus 251 ~~i~~~~v~ 259 (364)
..|+.+++.
T Consensus 379 ~~i~~~~l~ 387 (457)
T PRK11361 379 PIIFSEDLP 387 (457)
T ss_pred CcccHHHCh
Confidence 357776664
No 216
>PHA02244 ATPase-like protein
Probab=99.15 E-value=1e-09 Score=99.17 Aligned_cols=129 Identities=23% Similarity=0.221 Sum_probs=83.6
Q ss_pred HHHHHHhcCCCCcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCCCChHHHHHHHHH--HHhcCccccCCccc
Q 017884 64 TIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQD--FASTQSFSFGVKAS 141 (364)
Q Consensus 64 ~l~~~~~~~~~~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~--~~~~~~~~~~~~~~ 141 (364)
.+..++..+ .+++|+||+|+|||++|++++..+. ..++.++.... ...+...+.. .....++ ......
T Consensus 111 ri~r~l~~~--~PVLL~GppGtGKTtLA~aLA~~lg-----~pfv~In~l~d--~~~L~G~i~~~g~~~dgpL-l~A~~~ 180 (383)
T PHA02244 111 DIAKIVNAN--IPVFLKGGAGSGKNHIAEQIAEALD-----LDFYFMNAIMD--EFELKGFIDANGKFHETPF-YEAFKK 180 (383)
T ss_pred HHHHHHhcC--CCEEEECCCCCCHHHHHHHHHHHhC-----CCEEEEecChH--HHhhcccccccccccchHH-HHHhhc
Confidence 455555555 3599999999999999999999863 33444442110 0000000000 0000000 000124
Q ss_pred eEEEEEeCCCCCCHHHHHHHHHHHHH-----------hccCccEEEEeecc-----------ccCchhhhccceEEEecC
Q 017884 142 VKLVLLDEADAMTKDAQFALRRVIEK-----------YTKNTRFALICNQV-----------NKIIPALQSRCTRFRFAP 199 (364)
Q Consensus 142 ~~viiiDe~~~l~~~~~~~L~~~le~-----------~~~~~~~Il~~~~~-----------~~l~~~l~sr~~~i~~~~ 199 (364)
+.+++|||++.+.++.+..|...++. .++++++|+++|.. ..+.+++.+|+..+.|..
T Consensus 181 GgvLiLDEId~a~p~vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllDRFv~I~~dy 260 (383)
T PHA02244 181 GGLFFIDEIDASIPEALIIINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLDRFAPIEFDY 260 (383)
T ss_pred CCEEEEeCcCcCCHHHHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCcccccCCCcccCHHHHhhcEEeeCCC
Confidence 77999999999999999999999873 13577888888752 467889999999999988
Q ss_pred CCh
Q 017884 200 LEP 202 (364)
Q Consensus 200 ~~~ 202 (364)
|+.
T Consensus 261 p~~ 263 (383)
T PHA02244 261 DEK 263 (383)
T ss_pred CcH
Confidence 763
No 217
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.15 E-value=1.1e-09 Score=107.43 Aligned_cols=193 Identities=19% Similarity=0.261 Sum_probs=138.5
Q ss_pred hccCCCCCcchhccHHHHHHHHHHHhcCCCCcEEEeCCCCccHHHHHHHHHHHHcCCCCC-----CcEEEEeC------C
Q 017884 45 EKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYH-----NMILELNA------S 113 (364)
Q Consensus 45 ~~~~p~~~~~~vg~~~~~~~l~~~~~~~~~~~lll~G~~G~GKt~la~~l~~~l~~~~~~-----~~~~~~~~------~ 113 (364)
+.-|-..++.++|+++.+.++.+.+......+-++.|+||+|||.++.-+|.++.....+ ..++.++. +
T Consensus 162 ~~Ar~gklDPvIGRd~EI~r~iqIL~RR~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g~LvAGa 241 (786)
T COG0542 162 ELAREGKLDPVIGRDEEIRRTIQILSRRTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLGSLVAGA 241 (786)
T ss_pred HHHhcCCCCCCcChHHHHHHHHHHHhccCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecHHHHhccc
Confidence 334456789999999999999999988887788899999999999999999998544322 22333332 2
Q ss_pred CCCC--hHHHHHHHHHHHhcCccccCCccceEEEEEeCCCCCCH---------HHHHHHHHHHHHhccCccEEEEeec--
Q 017884 114 DDRG--IDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTK---------DAQFALRRVIEKYTKNTRFALICNQ-- 180 (364)
Q Consensus 114 ~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~~---------~~~~~L~~~le~~~~~~~~Il~~~~-- 180 (364)
...| .+.++..+...... ++-|+||||+|.+-. ++.|.|...+... ..++|.+|+.
T Consensus 242 kyRGeFEeRlk~vl~ev~~~---------~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARG--eL~~IGATT~~E 310 (786)
T COG0542 242 KYRGEFEERLKAVLKEVEKS---------KNVILFIDEIHTIVGAGATEGGAMDAANLLKPALARG--ELRCIGATTLDE 310 (786)
T ss_pred cccCcHHHHHHHHHHHHhcC---------CCeEEEEechhhhcCCCcccccccchhhhhHHHHhcC--CeEEEEeccHHH
Confidence 2221 12333333333222 367999999999942 2455666666543 4566776642
Q ss_pred ---cccCchhhhccceEEEecCCChHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCC------CHHHHHHHHHHHH
Q 017884 181 ---VNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEA----EGLDVTEGGLAALVRLCNG------DMRKALNILQSTH 247 (364)
Q Consensus 181 ---~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~----~~~~i~~~~~~~l~~~~~g------~~r~a~~~l~~~~ 247 (364)
.-.-+++|.+||+.+....|+.++...+|+....+ .++.++++++.+.+.++.. =|.+|+++++.++
T Consensus 311 YRk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGlk~~yE~hH~V~i~D~Al~aAv~LS~RYI~dR~LPDKAIDLiDeA~ 390 (786)
T COG0542 311 YRKYIEKDAALERRFQKVLVDEPSVEDTIAILRGLKERYEAHHGVRITDEALVAAVTLSDRYIPDRFLPDKAIDLLDEAG 390 (786)
T ss_pred HHHHhhhchHHHhcCceeeCCCCCHHHHHHHHHHHHHHHHHccCceecHHHHHHHHHHHHhhcccCCCCchHHHHHHHHH
Confidence 12457799999999999999999999999887765 4889999999999888742 3778999997766
Q ss_pred H
Q 017884 248 M 248 (364)
Q Consensus 248 ~ 248 (364)
.
T Consensus 391 a 391 (786)
T COG0542 391 A 391 (786)
T ss_pred H
Confidence 4
No 218
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=99.15 E-value=8.7e-09 Score=91.10 Aligned_cols=206 Identities=19% Similarity=0.199 Sum_probs=133.1
Q ss_pred CCCcchhccHHHHHHHHHHHhcCCC--CcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCCCChHHHHHHHHH
Q 017884 50 QSLADVAAHRDIVDTIDRLTSENRL--PHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQD 127 (364)
Q Consensus 50 ~~~~~~vg~~~~~~~l~~~~~~~~~--~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 127 (364)
..|+.+++....++.+....++-.+ .+++|.|++|+||..+|+++... ++.....|+-+||..... +.....+..
T Consensus 201 ~~F~~~v~~S~~mk~~v~qA~k~AmlDAPLLI~GeTGTGKdLlAkaCH~~--S~R~~~pFlalNCA~lPe-~~aEsElFG 277 (511)
T COG3283 201 SGFEQIVAVSPKMKHVVEQAQKLAMLDAPLLITGETGTGKDLLAKACHLA--SPRHSKPFLALNCASLPE-DAAESELFG 277 (511)
T ss_pred cchHHHhhccHHHHHHHHHHHHhhccCCCeEEecCCCchHHHHHHHHhhc--CcccCCCeeEeecCCCch-hHhHHHHhc
Confidence 3589999998888888777665432 23999999999999999998665 334456778888876432 232332322
Q ss_pred HHhc--CccccCCccceEEEEEeCCCCCCHHHHHHHHHHHHHhc-----------cCccEEEEeec-------cccCchh
Q 017884 128 FAST--QSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYT-----------KNTRFALICNQ-------VNKIIPA 187 (364)
Q Consensus 128 ~~~~--~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~-----------~~~~~Il~~~~-------~~~l~~~ 187 (364)
.+.. ....|-+.+.++.+++||+..|++..|..|++++.... .++++|.+|.. ..++...
T Consensus 278 ~apg~~gk~GffE~AngGTVlLDeIgEmSp~lQaKLLRFL~DGtFRRVGee~Ev~vdVRVIcatq~nL~~lv~~g~fReD 357 (511)
T COG3283 278 HAPGDEGKKGFFEQANGGTVLLDEIGEMSPRLQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQVNLVELVQKGKFRED 357 (511)
T ss_pred CCCCCCCccchhhhccCCeEEeehhhhcCHHHHHHHHHHhcCCceeecCCcceEEEEEEEEecccccHHHHHhcCchHHH
Confidence 2211 01112233467899999999999999999999998532 35666666531 1234445
Q ss_pred hhccceE--EEecCCCh--HH----HHHHHHHHHHHcC---CCCCHHHHHHHHHH-cCCCHHHHHHHHHHHHHhc--ccC
Q 017884 188 LQSRCTR--FRFAPLEP--VH----VTERLKHVIEAEG---LDVTEGGLAALVRL-CNGDMRKALNILQSTHMAS--QQI 253 (364)
Q Consensus 188 l~sr~~~--i~~~~~~~--~~----~~~~l~~~~~~~~---~~i~~~~~~~l~~~-~~g~~r~a~~~l~~~~~~~--~~i 253 (364)
+--|..+ ++++|+.+ ++ ..-++.+.+.+-+ ..++++.+.+|..+ +.||+|++.|.+-+++... ..+
T Consensus 358 LfyRLNVLtl~~PpLRer~~di~pL~e~Fv~q~s~elg~p~pkl~~~~~~~L~~y~WpGNVRqL~N~iyRA~s~~Eg~~l 437 (511)
T COG3283 358 LFYRLNVLTLNLPPLRERPQDIMPLAELFVQQFSDELGVPRPKLAADLLTVLTRYAWPGNVRQLKNAIYRALTLLEGYEL 437 (511)
T ss_pred HHHHhheeeecCCccccCcccchHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHcCCCccHHHHHHHHHHHHHHhccCcc
Confidence 5556544 44555543 12 2334555555544 46789999999877 4899999999885555432 344
Q ss_pred chHHH
Q 017884 254 TEEAV 258 (364)
Q Consensus 254 ~~~~v 258 (364)
+.+++
T Consensus 438 ~i~~i 442 (511)
T COG3283 438 RIEDI 442 (511)
T ss_pred chhhc
Confidence 44444
No 219
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.14 E-value=5.5e-11 Score=95.01 Aligned_cols=112 Identities=25% Similarity=0.337 Sum_probs=71.4
Q ss_pred cEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCCCChHHHHHHHHHHHhcCccc----cCCccceEEEEEeCCC
Q 017884 76 HLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFS----FGVKASVKLVLLDEAD 151 (364)
Q Consensus 76 ~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~----~~~~~~~~viiiDe~~ 151 (364)
+++|+||||+|||++++.+++.+ ...+..++.+.....+.+.....-......+. ......+.+++|||++
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~-----~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~~~~~il~lDEin 75 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALL-----GRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAMRKGGILVLDEIN 75 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH-----TCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTHHEEEEEEESSCG
T ss_pred CEEEECCCCCCHHHHHHHHHHHh-----hcceEEEEeccccccccceeeeeecccccccccccccccccceeEEEECCcc
Confidence 48999999999999999999998 44555566555443333221110000000000 0011258899999999
Q ss_pred CCCHHHHHHHHHHHHHhc-------------c------CccEEEEeeccc----cCchhhhccc
Q 017884 152 AMTKDAQFALRRVIEKYT-------------K------NTRFALICNQVN----KIIPALQSRC 192 (364)
Q Consensus 152 ~l~~~~~~~L~~~le~~~-------------~------~~~~Il~~~~~~----~l~~~l~sr~ 192 (364)
...++.++.|..++++.. . +.++|+++|... .+.+++++||
T Consensus 76 ~a~~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~Rf 139 (139)
T PF07728_consen 76 RAPPEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLDRF 139 (139)
T ss_dssp G--HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHTT-
T ss_pred cCCHHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHhhC
Confidence 999999999999998521 1 267777887766 7888888886
No 220
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.14 E-value=6.3e-10 Score=96.88 Aligned_cols=157 Identities=25% Similarity=0.358 Sum_probs=104.8
Q ss_pred CCcchhccHHHHHHHHHHHh-------cCCCC-----c--EEEeCCCCccHHHHHHHHHHHHc----CCCCCCcEEEEeC
Q 017884 51 SLADVAAHRDIVDTIDRLTS-------ENRLP-----H--LLLYGPPGTGKTSTILAVARKLY----GAQYHNMILELNA 112 (364)
Q Consensus 51 ~~~~~vg~~~~~~~l~~~~~-------~~~~~-----~--lll~G~~G~GKt~la~~l~~~l~----~~~~~~~~~~~~~ 112 (364)
-|+.++....+++.|..+.. .+..+ + ++++||||+|||++.+++|+.+. ...+....+++|+
T Consensus 140 lWEsLiyds~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEins 219 (423)
T KOG0744|consen 140 LWESLIYDSNLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINS 219 (423)
T ss_pred hHHHHhhcccHHHHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEeh
Confidence 46777777777777766543 11111 1 79999999999999999999873 3345566788876
Q ss_pred CCC-------C--ChHHHHHHHHHHHhcCccccCCccceEEEEEeCCCCCCH---------------HHHHHHHHHHHHh
Q 017884 113 SDD-------R--GIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTK---------------DAQFALRRVIEKY 168 (364)
Q Consensus 113 ~~~-------~--~~~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~~---------------~~~~~L~~~le~~ 168 (364)
... . -+..+-+.|++..... +.--.++|||++.+.. ...++++..|+..
T Consensus 220 hsLFSKWFsESgKlV~kmF~kI~ELv~d~-------~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrl 292 (423)
T KOG0744|consen 220 HSLFSKWFSESGKLVAKMFQKIQELVEDR-------GNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRL 292 (423)
T ss_pred hHHHHHHHhhhhhHHHHHHHHHHHHHhCC-------CcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHh
Confidence 432 1 1223334455544331 1356889999999842 2468888888876
Q ss_pred ccCc-cEEEEe-eccccCchhhhccc-eEEEecCCChHHHHHHHHHHHH
Q 017884 169 TKNT-RFALIC-NQVNKIIPALQSRC-TRFRFAPLEPVHVTERLKHVIE 214 (364)
Q Consensus 169 ~~~~-~~Il~~-~~~~~l~~~l~sr~-~~i~~~~~~~~~~~~~l~~~~~ 214 (364)
.... ++|++| |-.+.++.++..|+ .+....||+...+.++++....
T Consensus 293 K~~~NvliL~TSNl~~siD~AfVDRADi~~yVG~Pt~~ai~~Ilkscie 341 (423)
T KOG0744|consen 293 KRYPNVLILATSNLTDSIDVAFVDRADIVFYVGPPTAEAIYEILKSCIE 341 (423)
T ss_pred ccCCCEEEEeccchHHHHHHHhhhHhhheeecCCccHHHHHHHHHHHHH
Confidence 5432 344444 66678999999998 4566788888888888776543
No 221
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.13 E-value=1.4e-09 Score=99.64 Aligned_cols=149 Identities=21% Similarity=0.222 Sum_probs=98.7
Q ss_pred cchhccHHHHHHHHHHHhcCCCCcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCCCChHHH------HHHHH
Q 017884 53 ADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVV------RQQIQ 126 (364)
Q Consensus 53 ~~~vg~~~~~~~l~~~~~~~~~~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~------~~~i~ 126 (364)
..++|+++++..+...+..+ .|++|.||||+|||++++.+++.+ ...+..+.+.......++ .....
T Consensus 24 ~~~~g~~~~~~~~l~a~~~~--~~vll~G~PG~gKT~la~~lA~~l-----~~~~~~i~~t~~l~p~d~~G~~~~~~~~~ 96 (329)
T COG0714 24 KVVVGDEEVIELALLALLAG--GHVLLEGPPGVGKTLLARALARAL-----GLPFVRIQCTPDLLPSDLLGTYAYAALLL 96 (329)
T ss_pred CeeeccHHHHHHHHHHHHcC--CCEEEECCCCccHHHHHHHHHHHh-----CCCeEEEecCCCCCHHHhcCchhHhhhhc
Confidence 44788888888877777766 579999999999999999999998 356666666554333222 21110
Q ss_pred --H-H-HhcCccccCCccceEEEEEeCCCCCCHHHHHHHHHHHHHhc----------c-CccEEEEe-e-----ccccCc
Q 017884 127 --D-F-ASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYT----------K-NTRFALIC-N-----QVNKII 185 (364)
Q Consensus 127 --~-~-~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~----------~-~~~~Il~~-~-----~~~~l~ 185 (364)
. + ....+. +.. -..++++||+++..+..++.|+..|++.. . ...++++| | ..+.+.
T Consensus 97 ~~~~~~~~~gpl-~~~--~~~ill~DEInra~p~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~Np~e~~g~~~l~ 173 (329)
T COG0714 97 EPGEFRFVPGPL-FAA--VRVILLLDEINRAPPEVQNALLEALEERQVTVPGLTTIRLPPPFIVIATQNPGEYEGTYPLP 173 (329)
T ss_pred cCCeEEEecCCc-ccc--cceEEEEeccccCCHHHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEccCccccCCCcCCC
Confidence 0 0 011111 111 11499999999999999999999999721 1 22334444 5 345678
Q ss_pred hhhhccc-eEEEecCCChHHHHHHHHH
Q 017884 186 PALQSRC-TRFRFAPLEPVHVTERLKH 211 (364)
Q Consensus 186 ~~l~sr~-~~i~~~~~~~~~~~~~l~~ 211 (364)
+++++|| ..+.+..|+..+...++..
T Consensus 174 eA~ldRf~~~~~v~yp~~~~e~~~i~~ 200 (329)
T COG0714 174 EALLDRFLLRIYVDYPDSEEEERIILA 200 (329)
T ss_pred HHHHhhEEEEEecCCCCchHHHHHHHH
Confidence 9999999 7788877755544444433
No 222
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.11 E-value=9e-10 Score=95.44 Aligned_cols=171 Identities=22% Similarity=0.283 Sum_probs=106.7
Q ss_pred CCCcchhccHHHHHHHHHHHhc-----------C-CCCc-EEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCCC
Q 017884 50 QSLADVAAHRDIVDTIDRLTSE-----------N-RLPH-LLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDR 116 (364)
Q Consensus 50 ~~~~~~vg~~~~~~~l~~~~~~-----------~-~~~~-lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~ 116 (364)
.+|+.+-|.-..+..|+..+.- + .+|. ++||||||+|||.++++++..+ +.+++.+.++...
T Consensus 129 ~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~m-----g~nfl~v~ss~lv 203 (388)
T KOG0651|consen 129 ISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATM-----GVNFLKVVSSALV 203 (388)
T ss_pred cCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhc-----CCceEEeeHhhhh
Confidence 3888888888888887776541 1 2333 7999999999999999999997 5666666544321
Q ss_pred ------ChHHHHHHHHHHHhcCccccCCccceEEEEEeCCCCCC-----------HHHHHHHHHHHHHh-----ccCccE
Q 017884 117 ------GIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMT-----------KDAQFALRRVIEKY-----TKNTRF 174 (364)
Q Consensus 117 ------~~~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~-----------~~~~~~L~~~le~~-----~~~~~~ 174 (364)
....+++........ .++++++||+|... ...+..|.++++.. -..+.+
T Consensus 204 ~kyiGEsaRlIRemf~yA~~~---------~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l~rVk~ 274 (388)
T KOG0651|consen 204 DKYIGESARLIRDMFRYAREV---------IPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTLHRVKT 274 (388)
T ss_pred hhhcccHHHHHHHHHHHHhhh---------CceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchhcccccE
Confidence 112333333322222 46899999999884 12344555555432 246789
Q ss_pred EEEeeccccCchhhhccc---eEEEecCCChHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHcCC
Q 017884 175 ALICNQVNKIIPALQSRC---TRFRFAPLEPVHVTERLKHVIEAE--GLDVTEGGLAALVRLCNG 234 (364)
Q Consensus 175 Il~~~~~~~l~~~l~sr~---~~i~~~~~~~~~~~~~l~~~~~~~--~~~i~~~~~~~l~~~~~g 234 (364)
|+++|.++-++++|.+-+ ..+..+-|.......+++-....- --.|+.+++-.+.+-.+|
T Consensus 275 ImatNrpdtLdpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~~Geid~eaivK~~d~f~g 339 (388)
T KOG0651|consen 275 IMATNRPDTLDPALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDFHGEIDDEAILKLVDGFNG 339 (388)
T ss_pred EEecCCccccchhhcCCccccceeccCCcchhhceeeEeeccccccccccccHHHHHHHHhccCh
Confidence 999999999999998744 335555444444444333222211 114566655555554444
No 223
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=99.10 E-value=1.4e-08 Score=97.88 Aligned_cols=204 Identities=19% Similarity=0.203 Sum_probs=132.4
Q ss_pred cchhccHHHHHHHHHHHhc--CCCCcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCCCChHHHHHHHHHHHh
Q 017884 53 ADVAAHRDIVDTIDRLTSE--NRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFAS 130 (364)
Q Consensus 53 ~~~vg~~~~~~~l~~~~~~--~~~~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 130 (364)
..++|.......+...+.. +...++++.|++|+||+++|+++...-.. ....++.+++.... .+.+...+.....
T Consensus 134 ~~lig~s~~~~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~ih~~~~~--~~~~~~~~~c~~~~-~~~~~~~lfg~~~ 210 (463)
T TIGR01818 134 AELIGEAPAMQEVFRAIGRLSRSDITVLINGESGTGKELVARALHRHSPR--ANGPFIALNMAAIP-KDLIESELFGHEK 210 (463)
T ss_pred cceeecCHHHHHHHHHHHHHhCcCCeEEEECCCCCCHHHHHHHHHHhCCC--CCCCeEEEeCCCCC-HHHHHHHhcCCCC
Confidence 4577766655555544432 22234899999999999999999886432 24566777776642 2333322211000
Q ss_pred -----cC--ccccCCccceEEEEEeCCCCCCHHHHHHHHHHHHHhc-----------cCccEEEEeecc-------ccCc
Q 017884 131 -----TQ--SFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYT-----------KNTRFALICNQV-------NKII 185 (364)
Q Consensus 131 -----~~--~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~-----------~~~~~Il~~~~~-------~~l~ 185 (364)
.. ....-....++.++|||++.|+...|..|++++++.. .++++|++++.. ..+.
T Consensus 211 ~~~~~~~~~~~g~~~~a~~gtl~l~ei~~l~~~~q~~ll~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~f~ 290 (463)
T TIGR01818 211 GAFTGANTRRQGRFEQADGGTLFLDEIGDMPLDAQTRLLRVLADGEFYRVGGRTPIKVDVRIVAATHQNLEALVRQGKFR 290 (463)
T ss_pred CCCCCcccCCCCcEEECCCCeEEEEchhhCCHHHHHHHHHHHhcCcEEECCCCceeeeeeEEEEeCCCCHHHHHHcCCcH
Confidence 00 0000011246789999999999999999999998642 256777777533 1344
Q ss_pred hhhhccc--eEEEecCCC--hHHHHHHHHHH----HHHcC---CCCCHHHHHHHHHHc-CCCHHHHHHHHHHHHHhc--c
Q 017884 186 PALQSRC--TRFRFAPLE--PVHVTERLKHV----IEAEG---LDVTEGGLAALVRLC-NGDMRKALNILQSTHMAS--Q 251 (364)
Q Consensus 186 ~~l~sr~--~~i~~~~~~--~~~~~~~l~~~----~~~~~---~~i~~~~~~~l~~~~-~g~~r~a~~~l~~~~~~~--~ 251 (364)
+.+..|. ..++++|+. .+++..++... +...+ ..+++++++.|..+. .||+|.+.+.++.+...+ .
T Consensus 291 ~~L~~rl~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNvreL~~~~~~~~~~~~~~ 370 (463)
T TIGR01818 291 EDLFHRLNVIRIHLPPLRERREDIPRLARHFLALAARELDVEPKLLDPEALERLKQLRWPGNVRQLENLCRWLTVMASGD 370 (463)
T ss_pred HHHHHHhCcceecCCCcccchhhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHhCCCC
Confidence 5666664 468888887 45666555444 33333 468999999999886 899999999998887654 3
Q ss_pred cCchHHHH
Q 017884 252 QITEEAVY 259 (364)
Q Consensus 252 ~i~~~~v~ 259 (364)
.|+.+++.
T Consensus 371 ~i~~~~l~ 378 (463)
T TIGR01818 371 EVLVSDLP 378 (463)
T ss_pred cccHHhch
Confidence 57777764
No 224
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=99.10 E-value=2.3e-09 Score=104.90 Aligned_cols=122 Identities=15% Similarity=0.203 Sum_probs=80.0
Q ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHHHhc---------------------cCccEEEEeecc--ccCchhhhccce----
Q 017884 141 SVKLVLLDEADAMTKDAQFALRRVIEKYT---------------------KNTRFALICNQV--NKIIPALQSRCT---- 193 (364)
Q Consensus 141 ~~~viiiDe~~~l~~~~~~~L~~~le~~~---------------------~~~~~Il~~~~~--~~l~~~l~sr~~---- 193 (364)
++++++|||++.|++..|..|++.|++.. -++++|++++.. ..+.+.+.+|+.
T Consensus 226 nGGtL~LDei~~L~~~~q~~Llr~L~~~~i~i~g~~e~~~~~~~~~~~ip~dvrvI~a~~~~ll~~~dpdL~~rfk~~~v 305 (637)
T PRK13765 226 HKGVLFIDEINTLDLESQQSLLTAMQEKKFPITGQSERSSGAMVRTEPVPCDFIMVAAGNLDALENMHPALRSRIKGYGY 305 (637)
T ss_pred CCcEEEEeChHhCCHHHHHHHHHHHHhCCEEecccccccccccCCCcceeeeeEEEEecCcCHHHhhhHHHHHHhccCeE
Confidence 56899999999999999999999997432 245677777653 456788888874
Q ss_pred EEEecCCC---hHHHHHHHHHHHHH---c--CCCCCHHHHHHHHHHc---CCC-------HHHHHHHHHHHHHh-----c
Q 017884 194 RFRFAPLE---PVHVTERLKHVIEA---E--GLDVTEGGLAALVRLC---NGD-------MRKALNILQSTHMA-----S 250 (364)
Q Consensus 194 ~i~~~~~~---~~~~~~~l~~~~~~---~--~~~i~~~~~~~l~~~~---~g~-------~r~a~~~l~~~~~~-----~ 250 (364)
.+.|..-. ++....++...++. . -..++++++..|++++ .|+ .|.+.+++..+... .
T Consensus 306 ~v~f~~~~~d~~e~~~~~~~~iaqe~~~~G~l~~f~~eAVa~LI~~~~R~ag~r~~lsl~~~~l~~l~r~a~~~a~~~~~ 385 (637)
T PRK13765 306 EVYMRDTMEDTPENRRKLVRFVAQEVKRDGKIPHFDRDAVEEIIREAKRRAGRKGHLTLKLRDLGGLVRVAGDIARSEGA 385 (637)
T ss_pred EEEcccccCCCHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHHHhCCccccccCHHHHHHHHHHHHHHHHhhcc
Confidence 35565432 34555555544433 2 2368999999998765 232 55666665543322 2
Q ss_pred ccCchHHHHHhc
Q 017884 251 QQITEEAVYLCT 262 (364)
Q Consensus 251 ~~i~~~~v~~~~ 262 (364)
..++.++|.++.
T Consensus 386 ~~i~~~~v~~a~ 397 (637)
T PRK13765 386 ELTTAEHVLEAK 397 (637)
T ss_pred ceecHHHHHHHH
Confidence 357777776554
No 225
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=99.10 E-value=2.8e-09 Score=95.99 Aligned_cols=184 Identities=16% Similarity=0.200 Sum_probs=104.1
Q ss_pred cHHHHHHHHHHHhcC--CCCcEEEeCCCCccHHHHHHHHHHHHc-CCCCCCcEEEEeCCCCCChHH-HHHHHHHHHhcCc
Q 017884 58 HRDIVDTIDRLTSEN--RLPHLLLYGPPGTGKTSTILAVARKLY-GAQYHNMILELNASDDRGIDV-VRQQIQDFASTQS 133 (364)
Q Consensus 58 ~~~~~~~l~~~~~~~--~~~~lll~G~~G~GKt~la~~l~~~l~-~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~ 133 (364)
++..++++.+.+... ....+.|+|++|+|||++|..+++... ...+ ..++.++......... ....+..+....+
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f-~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~ 79 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRF-DGVIWVSLSKNPSLEQLLEQILRQLGEPDS 79 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCC-TEEEEEEEES-SCCHHHHHHHHHHHTCC-S
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeeccccccccccc-cccccccccccccccccccccccccccccc
Confidence 356778888888773 333389999999999999999998732 2222 2333444333222232 2332323222211
Q ss_pred ccc-C--C------------ccceEEEEEeCCCCCCHHHHHHHHHHHHHhccCccEEEEeeccccCchhhhccceEEEec
Q 017884 134 FSF-G--V------------KASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFA 198 (364)
Q Consensus 134 ~~~-~--~------------~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~l~~~l~sr~~~i~~~ 198 (364)
- . . . ..++.++|+|+++... ..+.+...+.....++++|++|... .+..........+++.
T Consensus 80 ~-~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~kilvTTR~~-~v~~~~~~~~~~~~l~ 155 (287)
T PF00931_consen 80 S-ISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEE--DLEELREPLPSFSSGSKILVTTRDR-SVAGSLGGTDKVIELE 155 (287)
T ss_dssp T-SSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHH--HH-------HCHHSS-EEEEEESCG-GGGTTHHSCEEEEECS
T ss_pred c-cccccccccccccchhhhccccceeeeeeecccc--ccccccccccccccccccccccccc-cccccccccccccccc
Confidence 0 0 0 0 1247899999987654 3444555555455678888888653 3333333336789999
Q ss_pred CCChHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Q 017884 199 PLEPVHVTERLKHVIEAEG---LDVTEGGLAALVRLCNGDMRKALNILQST 246 (364)
Q Consensus 199 ~~~~~~~~~~l~~~~~~~~---~~i~~~~~~~l~~~~~g~~r~a~~~l~~~ 246 (364)
+++.++..+++...+.... ..-.++....|++.++|.|-.+.-....+
T Consensus 156 ~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l 206 (287)
T PF00931_consen 156 PLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYL 206 (287)
T ss_dssp S--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999998875443 12224567889999998776655544444
No 226
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.08 E-value=1.4e-10 Score=95.33 Aligned_cols=104 Identities=26% Similarity=0.313 Sum_probs=67.7
Q ss_pred CcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCCCChHHHHHHHHHHHhcCccccCCccceEEEEEeCCCCCC
Q 017884 75 PHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMT 154 (364)
Q Consensus 75 ~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~ 154 (364)
.+++|.||+|+|||.+|+++++.+.. +....++.++++.....+.....+.......+. ........||++||+|+..
T Consensus 4 ~~~ll~GpsGvGKT~la~~la~~l~~-~~~~~~~~~d~s~~~~~~~~~~~~~~l~~~~~~-~v~~~~~gVVllDEidKa~ 81 (171)
T PF07724_consen 4 SNFLLAGPSGVGKTELAKALAELLFV-GSERPLIRIDMSEYSEGDDVESSVSKLLGSPPG-YVGAEEGGVVLLDEIDKAH 81 (171)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHT--SSCCEEEEEEGGGHCSHHHCSCHCHHHHHHTTC-HHHHHHHTEEEEETGGGCS
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhcc-CCccchHHHhhhcccccchHHhhhhhhhhcccc-eeeccchhhhhhHHHhhcc
Confidence 34899999999999999999999962 223456667766544422211112221111111 1111134599999999999
Q ss_pred H-----------HHHHHHHHHHHHh-----------ccCccEEEEeec
Q 017884 155 K-----------DAQFALRRVIEKY-----------TKNTRFALICNQ 180 (364)
Q Consensus 155 ~-----------~~~~~L~~~le~~-----------~~~~~~Il~~~~ 180 (364)
+ ..++.|++++++. ..++.||+++|-
T Consensus 82 ~~~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~ 129 (171)
T PF07724_consen 82 PSNSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNF 129 (171)
T ss_dssp HTTTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESS
T ss_pred ccccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEeccc
Confidence 9 9999999999973 245667777764
No 227
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=99.07 E-value=4.1e-09 Score=103.30 Aligned_cols=196 Identities=15% Similarity=0.133 Sum_probs=116.2
Q ss_pred HHHHHHHhcCCCCcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeC--CCC--CChHHHHHHHHHHHhcC-ccccC
Q 017884 63 DTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNA--SDD--RGIDVVRQQIQDFASTQ-SFSFG 137 (364)
Q Consensus 63 ~~l~~~~~~~~~~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~--~~~--~~~~~~~~~i~~~~~~~-~~~~~ 137 (364)
..|.-..-+....|++|.|++|+|||++++.+++.+... ..++.+.. +.. .+.-.+...+..-.... +-.+.
T Consensus 5 ~Al~l~av~p~~g~vLl~G~~GtgKs~lar~l~~~~~~~---~pfv~i~~~~t~d~L~G~idl~~~~~~g~~~~~~G~L~ 81 (589)
T TIGR02031 5 LALTLLAVDPSLGGVAIRARAGTGKTALARALAEILPPI---MPFVELPLGVTEDRLIGGIDVEESLAGGQRVTQPGLLD 81 (589)
T ss_pred HHHHHhccCCCcceEEEEcCCCcHHHHHHHHHHHhCCcC---CCeEecCcccchhhcccchhhhhhhhcCcccCCCCCee
Confidence 333333445557789999999999999999999986431 12344332 111 01101111111000000 00011
Q ss_pred CccceEEEEEeCCCCCCHHHHHHHHHHHHHhc-------------cCccEEEEeeccc---cCchhhhccc-eEEEecCC
Q 017884 138 VKASVKLVLLDEADAMTKDAQFALRRVIEKYT-------------KNTRFALICNQVN---KIIPALQSRC-TRFRFAPL 200 (364)
Q Consensus 138 ~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~-------------~~~~~Il~~~~~~---~l~~~l~sr~-~~i~~~~~ 200 (364)
..++++++|||++.+++..++.|+..|++.. ..+.+|.++|... .+.+.+..|+ ..+.+..+
T Consensus 82 -~A~~GvL~lDEi~rl~~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~LldRf~l~v~~~~~ 160 (589)
T TIGR02031 82 -EAPRGVLYVDMANLLDDGLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLDRLALHVSLEDV 160 (589)
T ss_pred -eCCCCcEeccchhhCCHHHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHHhccCeeecCCC
Confidence 1256799999999999999999999998642 3455665555443 6788899997 33444433
Q ss_pred -ChHHHHHHHHHHH---------------------H--HcCCCCCHHHHHHHHHHc---CC-CHHHHHHHHHHHHHh---
Q 017884 201 -EPVHVTERLKHVI---------------------E--AEGLDVTEGGLAALVRLC---NG-DMRKALNILQSTHMA--- 249 (364)
Q Consensus 201 -~~~~~~~~l~~~~---------------------~--~~~~~i~~~~~~~l~~~~---~g-~~r~a~~~l~~~~~~--- 249 (364)
+.++..+++.... + ...+.++++.+++|+..+ +- .+|..+..+..+...
T Consensus 161 ~~~~er~eil~~~~~~~~~~~~~~~~~~~~~i~~ar~~~~~V~i~~~~~~~l~~~~~~~gv~s~Ra~i~~~r~ArA~Aal 240 (589)
T TIGR02031 161 ASQDLRVEIVRRERCNEVFRMNDELELLRGQIEAARELLPQVTISAEQVKELVLTAASLGISGHRADLFAVRAAKAHAAL 240 (589)
T ss_pred CCHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHHHHHhcCCccCCHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHH
Confidence 3444444443321 1 135678999998888775 32 367777666544332
Q ss_pred --cccCchHHHHHhc
Q 017884 250 --SQQITEEAVYLCT 262 (364)
Q Consensus 250 --~~~i~~~~v~~~~ 262 (364)
...++.+||..++
T Consensus 241 ~gr~~V~~~Dv~~a~ 255 (589)
T TIGR02031 241 HGRTEVTEEDLKLAV 255 (589)
T ss_pred hCCCCCCHHHHHHHH
Confidence 2478888887654
No 228
>smart00350 MCM minichromosome maintenance proteins.
Probab=99.07 E-value=3.4e-09 Score=102.52 Aligned_cols=153 Identities=23% Similarity=0.280 Sum_probs=92.2
Q ss_pred chhccHHHHHHHHHHHhcCCC------------CcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCCCCh--H
Q 017884 54 DVAAHRDIVDTIDRLTSENRL------------PHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGI--D 119 (364)
Q Consensus 54 ~~vg~~~~~~~l~~~~~~~~~------------~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~--~ 119 (364)
.+.|++.++..+.-.+-+|.. .|+||+|+||+|||++++.+++..... .+.........+. .
T Consensus 204 ~i~G~~~~k~~l~l~l~gg~~~~~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r~----~~~~~~~~~~~~l~~~ 279 (509)
T smart00350 204 SIYGHEDIKKAILLLLFGGVHKNLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPRA----VYTTGKGSSAVGLTAA 279 (509)
T ss_pred cccCcHHHHHHHHHHHhCCCccccCCCccccccceEEEeCCCChhHHHHHHHHHHHcCcc----eEcCCCCCCcCCcccc
Confidence 467888877766666655421 279999999999999999999875211 1111000110000 0
Q ss_pred HHHHHHH-HH-HhcCccccCCccceEEEEEeCCCCCCHHHHHHHHHHHHHhc-------------cCccEEEEeeccc--
Q 017884 120 VVRQQIQ-DF-ASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYT-------------KNTRFALICNQVN-- 182 (364)
Q Consensus 120 ~~~~~i~-~~-~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~-------------~~~~~Il~~~~~~-- 182 (364)
.+++... .+ ...... . .+++++++|||++.+.+..+..|++.|++.. ..+.+|.++|...
T Consensus 280 ~~~~~~~g~~~~~~G~l-~--~A~~Gil~iDEi~~l~~~~q~~L~e~me~~~i~i~k~G~~~~l~~~~~viAa~NP~~g~ 356 (509)
T smart00350 280 VTRDPETREFTLEGGAL-V--LADNGVCCIDEFDKMDDSDRTAIHEAMEQQTISIAKAGITTTLNARCSVLAAANPIGGR 356 (509)
T ss_pred ceEccCcceEEecCccE-E--ecCCCEEEEechhhCCHHHHHHHHHHHhcCEEEEEeCCEEEEecCCcEEEEEeCCCCcc
Confidence 0011000 00 000011 1 1247899999999999999999999998642 4566777776542
Q ss_pred -----------cCchhhhccc-eEEEe-cCCChHHHHHHHHHHH
Q 017884 183 -----------KIIPALQSRC-TRFRF-APLEPVHVTERLKHVI 213 (364)
Q Consensus 183 -----------~l~~~l~sr~-~~i~~-~~~~~~~~~~~l~~~~ 213 (364)
.+.+++.+|| .++.+ .+++.+.-.+++..+.
T Consensus 357 y~~~~~~~~n~~l~~~lLsRFdLi~~~~d~~~~~~d~~i~~~i~ 400 (509)
T smart00350 357 YDPKLTPEENIDLPAPILSRFDLLFVVLDEVDEERDRELAKHVV 400 (509)
T ss_pred cCCCcChhhccCCChHHhCceeeEEEecCCCChHHHHHHHHHHH
Confidence 5888999999 44344 4555555555555543
No 229
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=99.07 E-value=1.7e-09 Score=88.69 Aligned_cols=123 Identities=15% Similarity=0.176 Sum_probs=77.1
Q ss_pred hhccHHHHHHHHHHHhcC--CCCcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCCCChHHHHHHHHHHHhcC
Q 017884 55 VAAHRDIVDTIDRLTSEN--RLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQ 132 (364)
Q Consensus 55 ~vg~~~~~~~l~~~~~~~--~~~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 132 (364)
++|....+..+.+.++.- ...+++|+|++|+||+.+|+++.+.- ......++.+|+... ..+.+...+.......
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~s--~r~~~pfi~vnc~~~-~~~~~e~~LFG~~~~~ 77 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNNS--PRKNGPFISVNCAAL-PEELLESELFGHEKGA 77 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHCS--TTTTS-EEEEETTTS--HHHHHHHHHEBCSSS
T ss_pred CEeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHhh--hcccCCeEEEehhhh-hcchhhhhhhcccccc
Confidence 467667777666666542 22459999999999999999999843 223467889999864 2233333332211100
Q ss_pred cc-------ccCCccceEEEEEeCCCCCCHHHHHHHHHHHHHh-----------ccCccEEEEeec
Q 017884 133 SF-------SFGVKASVKLVLLDEADAMTKDAQFALRRVIEKY-----------TKNTRFALICNQ 180 (364)
Q Consensus 133 ~~-------~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~-----------~~~~~~Il~~~~ 180 (364)
.. ..-..+.+++++|||++.|+...|..|+++|++. +.++++|++|+.
T Consensus 78 ~~~~~~~~~G~l~~A~~GtL~Ld~I~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~st~~ 143 (168)
T PF00158_consen 78 FTGARSDKKGLLEQANGGTLFLDEIEDLPPELQAKLLRVLEEGKFTRLGSDKPVPVDVRIIASTSK 143 (168)
T ss_dssp STTTSSEBEHHHHHTTTSEEEEETGGGS-HHHHHHHHHHHHHSEEECCTSSSEEE--EEEEEEESS
T ss_pred ccccccccCCceeeccceEEeecchhhhHHHHHHHHHHHHhhchhccccccccccccceEEeecCc
Confidence 00 0001135789999999999999999999999963 246778888763
No 230
>PRK12377 putative replication protein; Provisional
Probab=99.04 E-value=1.1e-09 Score=95.21 Aligned_cols=124 Identities=22% Similarity=0.351 Sum_probs=75.8
Q ss_pred cCCCCCcchhc----cHHHHHHHHHHHhcC--CCCcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCCCChHH
Q 017884 47 YRPQSLADVAA----HRDIVDTIDRLTSEN--RLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDV 120 (364)
Q Consensus 47 ~~p~~~~~~vg----~~~~~~~l~~~~~~~--~~~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 120 (364)
++..+|+.+.. +..++......+..- ...+++|+||||+|||+++.++++.+...+... ..++..+ -...
T Consensus 68 ~~~~tFdnf~~~~~~~~~a~~~a~~~a~~~~~~~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v--~~i~~~~--l~~~ 143 (248)
T PRK12377 68 HRKCSFANYQVQNDGQRYALSQAKSIADELMTGCTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSV--IVVTVPD--VMSR 143 (248)
T ss_pred cccCCcCCcccCChhHHHHHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCe--EEEEHHH--HHHH
Confidence 44456777753 333455444444421 234699999999999999999999987655443 3333221 1111
Q ss_pred HHHHH------HHHHhcCccccCCccceEEEEEeCC--CCCCHHHHHHHHHHHHHhcc-CccEEEEeecc
Q 017884 121 VRQQI------QDFASTQSFSFGVKASVKLVLLDEA--DAMTKDAQFALRRVIEKYTK-NTRFALICNQV 181 (364)
Q Consensus 121 ~~~~i------~~~~~~~~~~~~~~~~~~viiiDe~--~~l~~~~~~~L~~~le~~~~-~~~~Il~~~~~ 181 (364)
+.... ...... + ....+|+|||+ +..++..++.|..+++.... ....|++||..
T Consensus 144 l~~~~~~~~~~~~~l~~----l---~~~dLLiIDDlg~~~~s~~~~~~l~~ii~~R~~~~~ptiitSNl~ 206 (248)
T PRK12377 144 LHESYDNGQSGEKFLQE----L---CKVDLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLTNLN 206 (248)
T ss_pred HHHHHhccchHHHHHHH----h---cCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 11110 011111 1 14779999999 55577788899999998665 35678888743
No 231
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=99.03 E-value=2.5e-10 Score=87.13 Aligned_cols=111 Identities=26% Similarity=0.269 Sum_probs=57.3
Q ss_pred cEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCCCChHHHHHH-HHH-HHhcCccccCCccceEEEEEeCCCCC
Q 017884 76 HLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQ-IQD-FASTQSFSFGVKASVKLVLLDEADAM 153 (364)
Q Consensus 76 ~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~-~~~~~~~~~~~~~~~~viiiDe~~~l 153 (364)
|++|+|+||+|||++++++++.+. ..+..+..+...-..++... +.+ ......+..++. -..++++||+.+.
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~-----~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~~GPi-f~~ill~DEiNra 74 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLG-----LSFKRIQFTPDLLPSDILGFPVYDQETGEFEFRPGPI-FTNILLADEINRA 74 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT-------EEEEE--TT--HHHHHEEEEEETTTTEEEEEE-TT--SSEEEEETGGGS
T ss_pred CEeeECCCccHHHHHHHHHHHHcC-----CceeEEEecCCCCcccceeeeeeccCCCeeEeecChh-hhceeeecccccC
Confidence 789999999999999999999973 34444444332222222210 000 000000000000 1349999999999
Q ss_pred CHHHHHHHHHHHHHhc----------cCccEEEEe-eccc-----cCchhhhccc
Q 017884 154 TKDAQFALRRVIEKYT----------KNTRFALIC-NQVN-----KIIPALQSRC 192 (364)
Q Consensus 154 ~~~~~~~L~~~le~~~----------~~~~~Il~~-~~~~-----~l~~~l~sr~ 192 (364)
++..|.+|++.|++.. +...+|++| |..+ .+++++.+|+
T Consensus 75 ppktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~DRF 129 (131)
T PF07726_consen 75 PPKTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLDRF 129 (131)
T ss_dssp -HHHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHTTS
T ss_pred CHHHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhccc
Confidence 9999999999999853 233455555 4332 5666777775
No 232
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=99.02 E-value=5.7e-09 Score=90.26 Aligned_cols=174 Identities=19% Similarity=0.256 Sum_probs=109.2
Q ss_pred hhccHHHHHHHHHHH----hcCC--CCc-EEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEE-----EeCCCCCChHHHH
Q 017884 55 VAAHRDIVDTIDRLT----SENR--LPH-LLLYGPPGTGKTSTILAVARKLYGAQYHNMILE-----LNASDDRGIDVVR 122 (364)
Q Consensus 55 ~vg~~~~~~~l~~~~----~~~~--~~~-lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~-----~~~~~~~~~~~~~ 122 (364)
+.||.-+++.+.+.+ .++. .|- +-|+|++||||+.+++.+++.++..+....++. .+.+....++..+
T Consensus 84 lfGQHla~~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat~hFP~~~~ie~Yk 163 (344)
T KOG2170|consen 84 LFGQHLAKQLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVATLHFPHASKIEDYK 163 (344)
T ss_pred hhchHHHHHHHHHHHHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhHHHhhhhccCCChHHHHHHH
Confidence 456555555444444 4433 222 689999999999999999999987665443332 2233333445555
Q ss_pred HHHHHHHhcCccccCCccceEEEEEeCCCCCCHHHHHHHHHHHHHhc-------cCccEEEEeeccccCch---------
Q 017884 123 QQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYT-------KNTRFALICNQVNKIIP--------- 186 (364)
Q Consensus 123 ~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~-------~~~~~Il~~~~~~~l~~--------- 186 (364)
..+......... ...+.+.|+||+|.|.+...+.|...++.++ ..+.|||.+|.......
T Consensus 164 ~eL~~~v~~~v~----~C~rslFIFDE~DKmp~gLld~lkpfLdyyp~v~gv~frkaIFIfLSN~gg~eI~~~aL~~~~~ 239 (344)
T KOG2170|consen 164 EELKNRVRGTVQ----ACQRSLFIFDEVDKLPPGLLDVLKPFLDYYPQVSGVDFRKAIFIFLSNAGGSEIARIALENARN 239 (344)
T ss_pred HHHHHHHHHHHH----hcCCceEEechhhhcCHhHHHHHhhhhccccccccccccceEEEEEcCCcchHHHHHHHHHHHc
Confidence 444443222110 1147799999999999999999999998654 35678888863321111
Q ss_pred --------------hhh-------------cc-------ceEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Q 017884 187 --------------ALQ-------------SR-------CTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLC 232 (364)
Q Consensus 187 --------------~l~-------------sr-------~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~ 232 (364)
.+. ++ -..|.|.|++...++..++....++|...+.+.++.+++..
T Consensus 240 g~~re~~~l~~~E~~L~~~~~n~~~~Gl~~S~li~~~lid~fIPFLPLek~hV~~C~r~el~~rg~~~d~~~~erva~~l 319 (344)
T KOG2170|consen 240 GKPREQLRLKSFEPALMQSAFNEKAGGLVHSRLISNNLIDHFIPFLPLEKRHVRSCIRAELRKRGLAPDQDFVERVANSL 319 (344)
T ss_pred CCCcccchhhhhhHHHHHhhhccccccccccccchhhHHhhccCcCcccHHHHHHHHHHHHHhcccccchHHHHHHHHhh
Confidence 110 00 02366777777777777777777777777777777766543
No 233
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=98.98 E-value=1.9e-08 Score=96.21 Aligned_cols=151 Identities=20% Similarity=0.180 Sum_probs=95.2
Q ss_pred CCCcchhccHHHHHHHHHHHhcCCCCcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCCC-ChH---------
Q 017884 50 QSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDR-GID--------- 119 (364)
Q Consensus 50 ~~~~~~vg~~~~~~~l~~~~~~~~~~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~-~~~--------- 119 (364)
..|+++.|+..++..+...+..+ .+++|.||+|+|||++++.+...+.... ....++....... +..
T Consensus 189 ~d~~dv~Gq~~~~~al~~aa~~g--~~vlliG~pGsGKTtlar~l~~llp~~~-~~~~le~~~i~s~~g~~~~~~~~~~~ 265 (499)
T TIGR00368 189 LDLKDIKGQQHAKRALEIAAAGG--HNLLLFGPPGSGKTMLASRLQGILPPLT-NEEAIETARIWSLVGKLIDRKQIKQR 265 (499)
T ss_pred CCHHHhcCcHHHHhhhhhhccCC--CEEEEEecCCCCHHHHHHHHhcccCCCC-CcEEEeccccccchhhhccccccccC
Confidence 47999999999988887777655 4699999999999999999987653221 1112221111000 000
Q ss_pred ---------HHHHHHHHHHhcCccccCCccceEEEEEeCCCCCCHHHHHHHHHHHHHh-------------ccCccEEEE
Q 017884 120 ---------VVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKY-------------TKNTRFALI 177 (364)
Q Consensus 120 ---------~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~-------------~~~~~~Il~ 177 (364)
.....+...... ....-...++++++|||++.+.+..++.|+..|+.. +.++.+|.+
T Consensus 266 Pf~~p~~s~s~~~~~ggg~~~-~pG~i~lA~~GvLfLDEi~e~~~~~~~~L~~~LE~~~v~i~r~g~~~~~pa~frlIaa 344 (499)
T TIGR00368 266 PFRSPHHSASKPALVGGGPIP-LPGEISLAHNGVLFLDELPEFKRSVLDALREPIEDGSISISRASAKIFYPARFQLVAA 344 (499)
T ss_pred CccccccccchhhhhCCcccc-chhhhhccCCCeEecCChhhCCHHHHHHHHHHHHcCcEEEEecCcceeccCCeEEEEe
Confidence 000000000000 000001224789999999999999999999999864 345677777
Q ss_pred eecc-----------------------ccCchhhhccc-eEEEecCCChHH
Q 017884 178 CNQV-----------------------NKIIPALQSRC-TRFRFAPLEPVH 204 (364)
Q Consensus 178 ~~~~-----------------------~~l~~~l~sr~-~~i~~~~~~~~~ 204 (364)
+|.- .++..+|.+|+ ..+.+++++..+
T Consensus 345 ~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllDR~dl~~~~~~~~~~~ 395 (499)
T TIGR00368 345 MNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLDRIDLSVEVPLLPPEK 395 (499)
T ss_pred cCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHhhCCEEEEEcCCCHHH
Confidence 7642 15788899998 567777775543
No 234
>PF13173 AAA_14: AAA domain
Probab=98.97 E-value=4.9e-09 Score=82.37 Aligned_cols=119 Identities=24% Similarity=0.335 Sum_probs=77.7
Q ss_pred cEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCCCChHHHH-HHHHHHHhcCccccCCccceEEEEEeCCCCCC
Q 017884 76 HLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVR-QQIQDFASTQSFSFGVKASVKLVLLDEADAMT 154 (364)
Q Consensus 76 ~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~ 154 (364)
.++|+||.|+|||++++.+++.+. ....++.++..+........ +....+.... .. +..+|+|||++.+.
T Consensus 4 ~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~~~~~~~~~~~~~~~~~~~----~~--~~~~i~iDEiq~~~ 74 (128)
T PF13173_consen 4 IIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDDPRDRRLADPDLLEYFLELI----KP--GKKYIFIDEIQYLP 74 (128)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCCHHHHHHhhhhhHHHHHHhh----cc--CCcEEEEehhhhhc
Confidence 479999999999999999999874 23455566655432211100 0111122211 11 46899999999996
Q ss_pred HHHHHHHHHHHHHhccCccEEEEeeccc----cCchhhhccceEEEecCCChHHH
Q 017884 155 KDAQFALRRVIEKYTKNTRFALICNQVN----KIIPALQSRCTRFRFAPLEPVHV 205 (364)
Q Consensus 155 ~~~~~~L~~~le~~~~~~~~Il~~~~~~----~l~~~l~sr~~~i~~~~~~~~~~ 205 (364)
+....+..+.+.. .+..+|++++... .....+..|...+++.|++..|.
T Consensus 75 -~~~~~lk~l~d~~-~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 75 -DWEDALKFLVDNG-PNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred -cHHHHHHHHHHhc-cCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 4566666666655 5677888775443 34456777888999999998764
No 235
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=1.5e-08 Score=88.27 Aligned_cols=168 Identities=21% Similarity=0.327 Sum_probs=105.6
Q ss_pred CcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCC----CChHHHHHHHHHHHhcCccccCCccceEEEEEeCC
Q 017884 75 PHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDD----RGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEA 150 (364)
Q Consensus 75 ~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~----~~~~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~ 150 (364)
.++++.||+|+|||.+|+.+|+.+. ..|.--+++.. .-.+++.+.+....+...+.. ..+.+++|+|||+
T Consensus 98 SNILLiGPTGsGKTlLAqTLAk~Ln-----VPFaiADATtLTEAGYVGEDVENillkLlqaadydV-~rAerGIIyIDEI 171 (408)
T COG1219 98 SNILLIGPTGSGKTLLAQTLAKILN-----VPFAIADATTLTEAGYVGEDVENILLKLLQAADYDV-ERAERGIIYIDEI 171 (408)
T ss_pred ccEEEECCCCCcHHHHHHHHHHHhC-----CCeeeccccchhhccccchhHHHHHHHHHHHcccCH-HHHhCCeEEEech
Confidence 4599999999999999999999983 33322233221 122445555555555444321 2235889999999
Q ss_pred CCCC--------------HHHHHHHHHHHHHh-----c--------------cCccEEEEee------------------
Q 017884 151 DAMT--------------KDAQFALRRVIEKY-----T--------------KNTRFALICN------------------ 179 (364)
Q Consensus 151 ~~l~--------------~~~~~~L~~~le~~-----~--------------~~~~~Il~~~------------------ 179 (364)
|.+. +..|.+|++++|.. | .+..++|++-
T Consensus 172 DKIarkSeN~SITRDVSGEGVQQALLKiiEGTvasVPPqGGRKHP~Qe~iqvDT~NILFIcgGAF~GlekiI~~R~~~~~ 251 (408)
T COG1219 172 DKIARKSENPSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEFIQVDTSNILFICGGAFAGLEKIIKKRLGKKG 251 (408)
T ss_pred hhhhccCCCCCcccccCchHHHHHHHHHHcCceeccCCCCCCCCCccceEEEcccceeEEeccccccHHHHHHHhccCCc
Confidence 9995 34699999999952 1 2233455541
Q ss_pred ------c-----------------c-----ccCchhhhccc-eEEEecCCChHHHHHHHHH-----------HHHHcCC-
Q 017884 180 ------Q-----------------V-----NKIIPALQSRC-TRFRFAPLEPVHVTERLKH-----------VIEAEGL- 218 (364)
Q Consensus 180 ------~-----------------~-----~~l~~~l~sr~-~~i~~~~~~~~~~~~~l~~-----------~~~~~~~- 218 (364)
. + .-+.|.+.-|. .+..+.+++.+.+.++|.. .+...++
T Consensus 252 iGF~a~~~~~~~~~~~~~~l~~vepeDLvkFGLIPEfIGRlPvia~L~~Lde~aLv~ILtePkNAlvKQYq~Lf~~d~V~ 331 (408)
T COG1219 252 IGFGAEVKSKSKKKEEGELLKQVEPEDLVKFGLIPEFIGRLPVIATLEELDEDALVQILTEPKNALVKQYQKLFEMDGVE 331 (408)
T ss_pred ccccccccchhhhhhHHHHHHhcChHHHHHcCCcHHHhcccceeeehhhcCHHHHHHHHhcccHHHHHHHHHHhcccCce
Confidence 0 0 02455566665 4567888888888887754 1222333
Q ss_pred -CCCHHHHHHHHHHc---CCCHHHHHHHHHHHHH
Q 017884 219 -DVTEGGLAALVRLC---NGDMRKALNILQSTHM 248 (364)
Q Consensus 219 -~i~~~~~~~l~~~~---~g~~r~a~~~l~~~~~ 248 (364)
.++++++..+++.+ ..-.|.+...++.+..
T Consensus 332 L~F~~~AL~~IA~~A~~rkTGARGLRsI~E~~ll 365 (408)
T COG1219 332 LEFTEEALKAIAKKAIERKTGARGLRSIIEELLL 365 (408)
T ss_pred EEEcHHHHHHHHHHHHHhccchhHHHHHHHHHHH
Confidence 56899999888775 3335666666665543
No 236
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=98.97 E-value=9.3e-08 Score=91.58 Aligned_cols=203 Identities=16% Similarity=0.156 Sum_probs=125.2
Q ss_pred hhccHHHHHHHHHHHhcC--CCCcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCCCChHHHHHHHHHHHhcC
Q 017884 55 VAAHRDIVDTIDRLTSEN--RLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQ 132 (364)
Q Consensus 55 ~vg~~~~~~~l~~~~~~~--~~~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 132 (364)
++|.......+...+..- ...+++++|++|+||+++++++..... .....++.+++.... ...+...+.......
T Consensus 141 lig~s~~~~~~~~~i~~~~~~~~~vli~ge~g~gk~~~a~~ih~~s~--~~~~~~i~~~c~~~~-~~~~~~~lfg~~~~~ 217 (441)
T PRK10365 141 MVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIHASSA--RSEKPLVTLNCAALN-ESLLESELFGHEKGA 217 (441)
T ss_pred eEecCHHHHHHHHHHhhccCCCCeEEEEecCCCCHHHHHHHHHHcCC--CCCCCeeeeeCCCCC-HHHHHHHhcCCCCCC
Confidence 455444444443333221 223389999999999999999987642 234567788887643 233333322111000
Q ss_pred -------ccccCCccceEEEEEeCCCCCCHHHHHHHHHHHHHhc-----------cCccEEEEeeccc-------cCchh
Q 017884 133 -------SFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYT-----------KNTRFALICNQVN-------KIIPA 187 (364)
Q Consensus 133 -------~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~-----------~~~~~Il~~~~~~-------~l~~~ 187 (364)
....-....+++++|||++.|+...|..|+.++++.. .++++|++++... .+.+.
T Consensus 218 ~~~~~~~~~g~~~~a~~gtl~ldei~~l~~~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~~~~~~~~~~~~~~ 297 (441)
T PRK10365 218 FTGADKRREGRFVEADGGTLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAAEVNAGRFRQD 297 (441)
T ss_pred cCCCCcCCCCceeECCCCEEEEeccccCCHHHHHHHHHHHccCcEEeCCCCceeeeceEEEEeCCCCHHHHHHcCCchHH
Confidence 0000112357899999999999999999999998642 2456777774321 23334
Q ss_pred hhccc--eEEEecCCCh--HHHHHHHHHH----HHHcC---CCCCHHHHHHHHHHc-CCCHHHHHHHHHHHHHhc--ccC
Q 017884 188 LQSRC--TRFRFAPLEP--VHVTERLKHV----IEAEG---LDVTEGGLAALVRLC-NGDMRKALNILQSTHMAS--QQI 253 (364)
Q Consensus 188 l~sr~--~~i~~~~~~~--~~~~~~l~~~----~~~~~---~~i~~~~~~~l~~~~-~g~~r~a~~~l~~~~~~~--~~i 253 (364)
+..|+ ..+.+||+.+ +++..++... +.+.+ ..+++++++.|..+. +||+|.+.+.++.+.... ..|
T Consensus 298 l~~~l~~~~i~~ppLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgN~reL~~~~~~~~~~~~~~~i 377 (441)
T PRK10365 298 LYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELENAVERAVVLLTGEYI 377 (441)
T ss_pred HHHHhccceecCCChhhcchhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCCcc
Confidence 44444 4466666654 2444443333 33223 358999999999887 999999999999876543 367
Q ss_pred chHHHHH
Q 017884 254 TEEAVYL 260 (364)
Q Consensus 254 ~~~~v~~ 260 (364)
+.+++..
T Consensus 378 ~~~~l~~ 384 (441)
T PRK10365 378 SERELPL 384 (441)
T ss_pred chHhCch
Confidence 7777643
No 237
>PF08542 Rep_fac_C: Replication factor C C-terminal domain; InterPro: IPR013748 Replication factor C (RFC) is a multimeric AAA+ protein complex that loads the DNA polymerase processivity clamp PCNA (Proliferating Cell Nuclear Antigen) onto DNA using ATP to drive the reaction []. PCNA functions at multiple levels in directing DNA metabolic pathways []. When bound to DNA, PCNA organises various proteins involved in DNA replication, DNA repair, DNA modification, and chromatin modelling. Replication factor C consists of five subunits in a spiral arrangement: Rfc1, Rfc2, Rfc3, Rfc4, and Rfc5 subunits. Rfc1 and Rfc2 load the PCNA sliding clamp onto DNA, while Rfc3 binds ATP and also acts as a checkpoint sensor. The RFC complex contains four ATP sites (sites A, B, C, and D) located at subunit interfaces. In each ATP site, an arginine residue from one subunit is located near the gamma-phosphate of ATP bound in the adjacent subunit. These arginine residues act as "arginine fingers" that can potentially perform two functions: sensing that ATP is bound and catalyzing ATP hydrolysis []. This entry represents the core domain found in Rfc1-5.; GO: 0003689 DNA clamp loader activity, 0005524 ATP binding, 0006260 DNA replication, 0005663 DNA replication factor C complex; PDB: 1SXJ_B 2CHG_B 2CHV_F 2CHQ_C 1IQP_A.
Probab=98.96 E-value=2.2e-08 Score=73.21 Aligned_cols=87 Identities=31% Similarity=0.545 Sum_probs=77.4
Q ss_pred CChHHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhcCCChHHH
Q 017884 265 PLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDKLQ 344 (364)
Q Consensus 265 ~~~~~~~~l~~~l~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~i~~~l~~~~~~l~~~~~~~~~ 344 (364)
+.+..+.++++.+.++++.++...+.+++ ..|+++.+++..+++.+....+++....+++..++++|+++..|+++.+|
T Consensus 3 p~~~~i~~i~~~~~~~~~~~~~~~~~~l~-~~G~s~~~Il~~l~~~l~~~~~~~~~k~~i~~~la~~e~rl~~G~~e~lQ 81 (89)
T PF08542_consen 3 PPPEVIEEILESCLNGDFKEARKKLYELL-VEGYSASDILKQLHEVLVESDIPDSQKAEILKILAEIEYRLSDGASEILQ 81 (89)
T ss_dssp --HHHHHHHHHHHHHTCHHHHHHHHHHHH-HTT--HHHHHHHHHHHHHTSTSSHHHHHHHHHHHHHHHHHHHTTC-HHHH
T ss_pred CCHHHHHHHHHHHHhCCHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhHHHHCCCCHHHH
Confidence 45678899999999999999999999999 55999999999999999988888999999999999999999999999999
Q ss_pred HHHHHHHH
Q 017884 345 LGSIISTF 352 (364)
Q Consensus 345 l~~l~~~l 352 (364)
|+++++++
T Consensus 82 l~alva~~ 89 (89)
T PF08542_consen 82 LEALVAAF 89 (89)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhhC
Confidence 99999875
No 238
>PRK06526 transposase; Provisional
Probab=98.96 E-value=2.2e-09 Score=94.00 Aligned_cols=121 Identities=14% Similarity=0.183 Sum_probs=71.9
Q ss_pred CcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCCCChHHHHHHHHHHHhcCcc--ccCCccceEEEEEeCCCC
Q 017884 75 PHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSF--SFGVKASVKLVLLDEADA 152 (364)
Q Consensus 75 ~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~viiiDe~~~ 152 (364)
.+++|+||+|+|||+++.+++.++...+....+ .+. ..+.+.+......... .+....+..+|||||++.
T Consensus 99 ~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f--~t~------~~l~~~l~~~~~~~~~~~~l~~l~~~dlLIIDD~g~ 170 (254)
T PRK06526 99 ENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLF--ATA------AQWVARLAAAHHAGRLQAELVKLGRYPLLIVDEVGY 170 (254)
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHHHCCCchhh--hhH------HHHHHHHHHHHhcCcHHHHHHHhccCCEEEEccccc
Confidence 569999999999999999999987655443322 211 1111111110000000 000011367999999998
Q ss_pred CC--HHHHHHHHHHHHHhccCccEEEEeecccc--------------CchhhhccceEEEecCCChH
Q 017884 153 MT--KDAQFALRRVIEKYTKNTRFALICNQVNK--------------IIPALQSRCTRFRFAPLEPV 203 (364)
Q Consensus 153 l~--~~~~~~L~~~le~~~~~~~~Il~~~~~~~--------------l~~~l~sr~~~i~~~~~~~~ 203 (364)
+. +..++.|+.+++.......+|++||.+.. +...|..+|.++.|...+..
T Consensus 171 ~~~~~~~~~~L~~li~~r~~~~s~IitSn~~~~~w~~~~~d~~~a~ai~dRl~~~~~~i~~~g~s~R 237 (254)
T PRK06526 171 IPFEPEAANLFFQLVSSRYERASLIVTSNKPFGRWGEVFGDDVVAAAMIDRLVHHAEVISLKGDSYR 237 (254)
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCEEEEcCCCHHHHHHHcCChHHHHHHHHHHhcCceEEeecCCCcc
Confidence 74 66677889998875555678888875431 12233334677777765543
No 239
>PRK08181 transposase; Validated
Probab=98.96 E-value=7e-09 Score=91.37 Aligned_cols=106 Identities=22% Similarity=0.309 Sum_probs=65.8
Q ss_pred HHHHhcCCCCcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCCCChHHHHHHHHHHHhcCcc--ccCCccceE
Q 017884 66 DRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSF--SFGVKASVK 143 (364)
Q Consensus 66 ~~~~~~~~~~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~ 143 (364)
..|+..+ .+++|+||+|+|||+++.++++++...+... +.++.. .+...+......... .+.......
T Consensus 100 ~~~~~~~--~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v--~f~~~~------~L~~~l~~a~~~~~~~~~l~~l~~~d 169 (269)
T PRK08181 100 DSWLAKG--ANLLLFGPPGGGKSHLAAAIGLALIENGWRV--LFTRTT------DLVQKLQVARRELQLESAIAKLDKFD 169 (269)
T ss_pred HHHHhcC--ceEEEEecCCCcHHHHHHHHHHHHHHcCCce--eeeeHH------HHHHHHHHHHhCCcHHHHHHHHhcCC
Confidence 3566544 5699999999999999999999886555433 333321 122212111000000 000011467
Q ss_pred EEEEeCCCCCC--HHHHHHHHHHHHHhccCccEEEEeecc
Q 017884 144 LVLLDEADAMT--KDAQFALRRVIEKYTKNTRFALICNQV 181 (364)
Q Consensus 144 viiiDe~~~l~--~~~~~~L~~~le~~~~~~~~Il~~~~~ 181 (364)
++||||++... ...+..|+.+++.......+|++||.+
T Consensus 170 LLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~ 209 (269)
T PRK08181 170 LLILDDLAYVTKDQAETSVLFELISARYERRSILITANQP 209 (269)
T ss_pred EEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCC
Confidence 99999998875 445678999998766566788888754
No 240
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.95 E-value=3.6e-08 Score=94.28 Aligned_cols=156 Identities=19% Similarity=0.266 Sum_probs=107.2
Q ss_pred CCCcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCCCC--hHHHHHHHHHH-HhcCccccCCccceEEEEEeC
Q 017884 73 RLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRG--IDVVRQQIQDF-ASTQSFSFGVKASVKLVLLDE 149 (364)
Q Consensus 73 ~~~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~-~~~~~~~~~~~~~~~viiiDe 149 (364)
+.++++|+||+|+|||.+++++++.+. ......+..++++...+ .+.+...+... .+.... .+.||++|+
T Consensus 430 ~~~~Ill~G~~GsGKT~L~kal~~~~~-k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~vfse~~~~------~PSiIvLDd 502 (952)
T KOG0735|consen 430 RHGNILLNGPKGSGKTNLVKALFDYYS-KDLIAHVEIVSCSTLDGSSLEKIQKFLNNVFSEALWY------APSIIVLDD 502 (952)
T ss_pred ccccEEEeCCCCCCHhHHHHHHHHHhc-cccceEEEEEechhccchhHHHHHHHHHHHHHHHHhh------CCcEEEEcc
Confidence 345699999999999999999999986 33445555567765433 44444444442 222222 478999999
Q ss_pred CCCCCHH----------H---H-HHHHHHHHHhcc---CccEEEEeeccccCchhhhcc--c-eEEEecCCChHHHHHHH
Q 017884 150 ADAMTKD----------A---Q-FALRRVIEKYTK---NTRFALICNQVNKIIPALQSR--C-TRFRFAPLEPVHVTERL 209 (364)
Q Consensus 150 ~~~l~~~----------~---~-~~L~~~le~~~~---~~~~Il~~~~~~~l~~~l~sr--~-~~i~~~~~~~~~~~~~l 209 (364)
+|.+... . . ..|...+..+.. ...+|++++....+.+.|.+. + .++.+++|...+..++|
T Consensus 503 ld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ap~~~~R~~IL 582 (952)
T KOG0735|consen 503 LDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALPAPAVTRRKEIL 582 (952)
T ss_pred hhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEecCCcchhHHHHHH
Confidence 9998530 1 1 122244444332 234555666666777777663 4 46889999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHcCCC
Q 017884 210 KHVIEAEGLDVTEGGLAALVRLCNGD 235 (364)
Q Consensus 210 ~~~~~~~~~~i~~~~~~~l~~~~~g~ 235 (364)
+..+.+....+..+.++.++..++|-
T Consensus 583 ~~~~s~~~~~~~~~dLd~ls~~TEGy 608 (952)
T KOG0735|consen 583 TTIFSKNLSDITMDDLDFLSVKTEGY 608 (952)
T ss_pred HHHHHhhhhhhhhHHHHHHHHhcCCc
Confidence 99999887777888899999999774
No 241
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.95 E-value=2.2e-09 Score=85.47 Aligned_cols=126 Identities=18% Similarity=0.238 Sum_probs=76.3
Q ss_pred hccHHHHHHHHHHHhcC--CCCcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCCCChHHHHHHHHHHHhcCc
Q 017884 56 AAHRDIVDTIDRLTSEN--RLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQS 133 (364)
Q Consensus 56 vg~~~~~~~l~~~~~~~--~~~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 133 (364)
||....++.+++.+..- ...+++|+|++|+||+++|+.++..-.. ....++.+++.... .+.+...
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~~~--~~~~~~~~~~~~~~-----~~~l~~a----- 68 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYSGR--ANGPFIVIDCASLP-----AELLEQA----- 68 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTTTT--CCS-CCCCCHHCTC-----HHHHHHC-----
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhcCc--cCCCeEEechhhCc-----HHHHHHc-----
Confidence 35555666666665532 2244999999999999999999886422 12222223332211 1122221
Q ss_pred cccCCccceEEEEEeCCCCCCHHHHHHHHHHHHHh-ccCccEEEEeeccc-------cCchhhhccc--eEEEecCC
Q 017884 134 FSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKY-TKNTRFALICNQVN-------KIIPALQSRC--TRFRFAPL 200 (364)
Q Consensus 134 ~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~-~~~~~~Il~~~~~~-------~l~~~l~sr~--~~i~~~~~ 200 (364)
.++.++|+|++.++.+.|..|..+++.. ..++++|+++...- .+.+.+-.|. ..+.+||+
T Consensus 69 -------~~gtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~RlI~ss~~~l~~l~~~~~~~~~L~~~l~~~~i~lPpL 138 (138)
T PF14532_consen 69 -------KGGTLYLKNIDRLSPEAQRRLLDLLKRQERSNVRLIASSSQDLEELVEEGRFSPDLYYRLSQLEIHLPPL 138 (138)
T ss_dssp -------TTSEEEEECGCCS-HHHHHHHHHHHHHCTTTTSEEEEEECC-CCCHHHHSTHHHHHHHHCSTCEEEE---
T ss_pred -------CCCEEEECChHHCCHHHHHHHHHHHHhcCCCCeEEEEEeCCCHHHHhhccchhHHHHHHhCCCEEeCCCC
Confidence 3669999999999999999999999975 56788888885332 3444555553 45666553
No 242
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=98.94 E-value=1.6e-08 Score=101.01 Aligned_cols=143 Identities=18% Similarity=0.224 Sum_probs=84.4
Q ss_pred chhccHHHHHHHHHHHhcCC---------------------CCcEEEeCCCCccHHHHHHHHHHHHcCCCC--CCcEEEE
Q 017884 54 DVAAHRDIVDTIDRLTSENR---------------------LPHLLLYGPPGTGKTSTILAVARKLYGAQY--HNMILEL 110 (364)
Q Consensus 54 ~~vg~~~~~~~l~~~~~~~~---------------------~~~lll~G~~G~GKt~la~~l~~~l~~~~~--~~~~~~~ 110 (364)
.+.|++.++..+.-.+-+|. ..|+||.|+||+|||.+++.+++......+ +..+..+
T Consensus 451 ~I~G~e~vK~ailL~L~gG~~k~~~~~~~~dg~~~~~~iRgdihVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s~v 530 (915)
T PTZ00111 451 SIKARNNVKIGLLCQLFSGNKNSSDFNKSPDACYKVDNFRGIINVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSSSV 530 (915)
T ss_pred eEECCHHHHHHHHHHHhcCCccccccccccccccccccccCCceEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCccc
Confidence 46788888887655554332 116999999999999999999885321110 0011111
Q ss_pred eCCCCCChHHHHHHH-HHHH-hcCccccCCccceEEEEEeCCCCCCHHHHHHHHHHHHHhc-------------cCccEE
Q 017884 111 NASDDRGIDVVRQQI-QDFA-STQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYT-------------KNTRFA 175 (364)
Q Consensus 111 ~~~~~~~~~~~~~~i-~~~~-~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~-------------~~~~~I 175 (364)
+.... ....+.. ..+. ..-.+ ..+.+++++|||++.|+...|..|+++|++.. ..+.+|
T Consensus 531 gLTa~---~~~~d~~tG~~~le~GaL---vlAdgGtL~IDEidkms~~~Q~aLlEaMEqqtIsI~KaGi~~tL~ar~rVI 604 (915)
T PTZ00111 531 GLTAS---IKFNESDNGRAMIQPGAV---VLANGGVCCIDELDKCHNESRLSLYEVMEQQTVTIAKAGIVATLKAETAIL 604 (915)
T ss_pred cccch---hhhcccccCcccccCCcE---EEcCCCeEEecchhhCCHHHHHHHHHHHhCCEEEEecCCcceecCCCeEEE
Confidence 11110 0000000 0000 00001 01247899999999999999999999998642 467777
Q ss_pred EEeeccc-------------cCchhhhccceE--EEecCCCh
Q 017884 176 LICNQVN-------------KIIPALQSRCTR--FRFAPLEP 202 (364)
Q Consensus 176 l~~~~~~-------------~l~~~l~sr~~~--i~~~~~~~ 202 (364)
.++|+.. .++++|.|||.. +-+..+++
T Consensus 605 AAaNP~~gryd~~~s~~eni~Lp~~LLSRFDLIf~l~D~~d~ 646 (915)
T PTZ00111 605 ASCNPINSRYNKNKAVIENINISPSLFTRFDLIYLVLDHIDQ 646 (915)
T ss_pred EEcCCcccccCcccCcccccCCChHHhhhhcEEEEecCCCCh
Confidence 7776531 577899999833 33344443
No 243
>PRK08116 hypothetical protein; Validated
Probab=98.92 E-value=1.2e-08 Score=90.33 Aligned_cols=147 Identities=18% Similarity=0.229 Sum_probs=86.9
Q ss_pred hccCCCCCcchhcc---HHHHHHHHHHHhc----CC-CCcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCCC
Q 017884 45 EKYRPQSLADVAAH---RDIVDTIDRLTSE----NR-LPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDR 116 (364)
Q Consensus 45 ~~~~p~~~~~~vg~---~~~~~~l~~~~~~----~~-~~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~ 116 (364)
.+++-.+|+.+... ..++...+..+.+ .. ...++|+|++|+|||+++.++++.+...+ ..++.++....
T Consensus 77 ~~~~~~tFdnf~~~~~~~~a~~~a~~y~~~~~~~~~~~~gl~l~G~~GtGKThLa~aia~~l~~~~--~~v~~~~~~~l- 153 (268)
T PRK08116 77 EKFRNSTFENFLFDKGSEKAYKIARKYVKKFEEMKKENVGLLLWGSVGTGKTYLAACIANELIEKG--VPVIFVNFPQL- 153 (268)
T ss_pred HHHHhcchhcccCChHHHHHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHHcC--CeEEEEEHHHH-
Confidence 34555567766542 2233444444432 11 12399999999999999999999986553 33444443210
Q ss_pred ChHHHHHHH--------HHHHhcCccccCCccceEEEEEeCC--CCCCHHHHHHHHHHHHHhc-cCccEEEEeeccc---
Q 017884 117 GIDVVRQQI--------QDFASTQSFSFGVKASVKLVLLDEA--DAMTKDAQFALRRVIEKYT-KNTRFALICNQVN--- 182 (364)
Q Consensus 117 ~~~~~~~~i--------~~~~~~~~~~~~~~~~~~viiiDe~--~~l~~~~~~~L~~~le~~~-~~~~~Il~~~~~~--- 182 (364)
...+.... ..+... +. ...+|+|||+ +..++..+..|+.+++... ....+|++||...
T Consensus 154 -l~~i~~~~~~~~~~~~~~~~~~----l~---~~dlLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~~~eL 225 (268)
T PRK08116 154 -LNRIKSTYKSSGKEDENEIIRS----LV---NADLLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLSLEEL 225 (268)
T ss_pred -HHHHHHHHhccccccHHHHHHH----hc---CCCEEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHH
Confidence 11111100 011111 11 3569999999 5567777888999998753 4456888887543
Q ss_pred --cCchhhhcc----ceEEEecCCCh
Q 017884 183 --KIIPALQSR----CTRFRFAPLEP 202 (364)
Q Consensus 183 --~l~~~l~sr----~~~i~~~~~~~ 202 (364)
.+...+.+| |..+.|..++.
T Consensus 226 ~~~~~~ri~sRl~e~~~~v~~~g~d~ 251 (268)
T PRK08116 226 KNQYGKRIYDRILEMCTPVENEGKSY 251 (268)
T ss_pred HHHHhHHHHHHHHHcCEEEEeeCcCh
Confidence 134566676 67788876653
No 244
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.92 E-value=4.6e-08 Score=88.56 Aligned_cols=92 Identities=11% Similarity=0.019 Sum_probs=64.4
Q ss_pred cceEEEEEeCCCCCCHHHHHHHHHHHHHhc-----------cCccEEEEeecc-------ccCchhhhccceEEEecCCC
Q 017884 140 ASVKLVLLDEADAMTKDAQFALRRVIEKYT-----------KNTRFALICNQV-------NKIIPALQSRCTRFRFAPLE 201 (364)
Q Consensus 140 ~~~~viiiDe~~~l~~~~~~~L~~~le~~~-----------~~~~~Il~~~~~-------~~l~~~l~sr~~~i~~~~~~ 201 (364)
+.++++-++|+.....+.++.|+.++++.. .+..+|.++|.. .+..+++++||..+.++-+.
T Consensus 235 aNrGi~~f~Ei~K~~~~~l~~LL~~~qE~~v~~~~~~~~~~~d~liia~sNe~e~~~~~~~k~~eaf~dR~~~i~vpY~l 314 (361)
T smart00763 235 ANRGILEFVEMFKADIKFLHPLLTATQEGNIKGTGGFAMIPIDGLIIAHSNESEWQRFKSNKKNEALLDRIIKVKVPYCL 314 (361)
T ss_pred ccCceEEEeehhcCCHHHHHHHhhhhhcceEecCCcccccccceEEEEeCCHHHHhhhhccccchhhhhceEEEeCCCcC
Confidence 357899999999999999999999999632 123345555544 26688999999988886665
Q ss_pred h-HHHHHHHHHHHHHc---CCCCCHHHHHHHHHH
Q 017884 202 P-VHVTERLKHVIEAE---GLDVTEGGLAALVRL 231 (364)
Q Consensus 202 ~-~~~~~~l~~~~~~~---~~~i~~~~~~~l~~~ 231 (364)
. .+-.++.++.+... +..+.+.+++.++..
T Consensus 315 ~~~~E~~Iy~k~~~~s~~~~~~~aP~~le~aa~~ 348 (361)
T smart00763 315 RVSEEAQIYEKLLRNSDLTEAHIAPHTLEMAALF 348 (361)
T ss_pred CHHHHHHHHHHHhccCcCcccccCchHHHHHHHH
Confidence 4 55566666665533 455666666655544
No 245
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.92 E-value=5.6e-09 Score=96.58 Aligned_cols=171 Identities=22% Similarity=0.270 Sum_probs=105.2
Q ss_pred CCCCc---EEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCC------CCChHHHHHHHHHHHhcCccccCCccce
Q 017884 72 NRLPH---LLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASD------DRGIDVVRQQIQDFASTQSFSFGVKASV 142 (364)
Q Consensus 72 ~~~~~---lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~------~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 142 (364)
-..+| +|||||||||||.+|+.+.+-|+...+.. +|++. ..+.+.++..+.+..+...- .+...+-
T Consensus 251 lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKI----VNGPeIL~KYVGeSE~NvR~LFaDAEeE~r~-~g~~SgL 325 (744)
T KOG0741|consen 251 LGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKI----VNGPEILNKYVGESEENVRKLFADAEEEQRR-LGANSGL 325 (744)
T ss_pred cCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcc----cCcHHHHHHhhcccHHHHHHHHHhHHHHHHh-hCccCCc
Confidence 34556 89999999999999999999997654421 23222 12334556555554332221 3333356
Q ss_pred EEEEEeCCCCCCH-------------HHHHHHHHHHHHh--ccCccEEEEeeccccCchhhhccc---eEEEecCCChHH
Q 017884 143 KLVLLDEADAMTK-------------DAQFALRRVIEKY--TKNTRFALICNQVNKIIPALQSRC---TRFRFAPLEPVH 204 (364)
Q Consensus 143 ~viiiDe~~~l~~-------------~~~~~L~~~le~~--~~~~~~Il~~~~~~~l~~~l~sr~---~~i~~~~~~~~~ 204 (364)
-|||+||+|.+.+ ...+.|+.-|+.- -.+..+|-.||..+-++++|.+-+ ..+++.-|++.-
T Consensus 326 HIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGVeqLNNILVIGMTNR~DlIDEALLRPGRlEVqmEIsLPDE~g 405 (744)
T KOG0741|consen 326 HIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGVEQLNNILVIGMTNRKDLIDEALLRPGRLEVQMEISLPDEKG 405 (744)
T ss_pred eEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhcccHHhhhcEEEEeccCchhhHHHHhcCCCceEEEEEEeCCCccC
Confidence 7999999999853 3467777777642 346677888999999999998854 347777888876
Q ss_pred HHHHHHHHHH---HcCCCCCHHHHHHHHHHc----CCCHHHHHHHHHHHH
Q 017884 205 VTERLKHVIE---AEGLDVTEGGLAALVRLC----NGDMRKALNILQSTH 247 (364)
Q Consensus 205 ~~~~l~~~~~---~~~~~i~~~~~~~l~~~~----~g~~r~a~~~l~~~~ 247 (364)
..++++-..+ ..+.-=++-.++.|+..+ |..+..++...+..+
T Consensus 406 RlQIl~IHT~rMre~~~l~~dVdl~elA~lTKNfSGAEleglVksA~S~A 455 (744)
T KOG0741|consen 406 RLQILKIHTKRMRENNKLSADVDLKELAALTKNFSGAELEGLVKSAQSFA 455 (744)
T ss_pred ceEEEEhhhhhhhhcCCCCCCcCHHHHHHHhcCCchhHHHHHHHHHHHHH
Confidence 6665544333 223211222356666654 333444444444433
No 246
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=4.2e-08 Score=88.89 Aligned_cols=170 Identities=25% Similarity=0.327 Sum_probs=110.4
Q ss_pred CcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCC----CChHHHHHHHHHHHhcCccccCCccceEEEEEeCC
Q 017884 75 PHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDD----RGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEA 150 (364)
Q Consensus 75 ~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~----~~~~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~ 150 (364)
.++|+.||+|+|||.+|+.+|+.+ +..+.-.+++.. .-.+++...|........+.. ..+..+||+|||+
T Consensus 227 SNvLllGPtGsGKTllaqTLAr~l-----dVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nV-ekAQqGIVflDEv 300 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLLAQTLARVL-----DVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNV-EKAQQGIVFLDEV 300 (564)
T ss_pred ccEEEECCCCCchhHHHHHHHHHh-----CCCeEEecccchhhcccccccHHHHHHHHHHHccCCH-HHHhcCeEEEehh
Confidence 459999999999999999999998 344444444432 112344444444433322211 1225789999999
Q ss_pred CCCC--------------HHHHHHHHHHHHHhc-------------------cCccEEEEee------------------
Q 017884 151 DAMT--------------KDAQFALRRVIEKYT-------------------KNTRFALICN------------------ 179 (364)
Q Consensus 151 ~~l~--------------~~~~~~L~~~le~~~-------------------~~~~~Il~~~------------------ 179 (364)
|.+. +..|.+|++++|..- +++-++|++.
T Consensus 301 DKi~~~~~~i~~~RDVsGEGVQQaLLKllEGtvVnVpeK~~~~~~rgd~vqiDTtnILFiasGAF~~Ldk~I~rR~~d~s 380 (564)
T KOG0745|consen 301 DKITKKAESIHTSRDVSGEGVQQALLKLLEGTVVNVPEKGSRRKPRGDTVQIDTTNILFIASGAFVGLDKIISRRLDDKS 380 (564)
T ss_pred hhhcccCccccccccccchhHHHHHHHHhcccEEcccCCCCCCCCCCCeEEEeccceEEEecccccchHHHHHHhhcchh
Confidence 9996 346999999998421 1223444431
Q ss_pred ----cc------------------------------------ccCchhhhccc-eEEEecCCChHHHHHHHHHH------
Q 017884 180 ----QV------------------------------------NKIIPALQSRC-TRFRFAPLEPVHVTERLKHV------ 212 (364)
Q Consensus 180 ----~~------------------------------------~~l~~~l~sr~-~~i~~~~~~~~~~~~~l~~~------ 212 (364)
.+ .-+.|.+.-|+ .++.|.+++.+++..+|..-
T Consensus 381 lGFg~~s~~~vr~~~~~~s~~~~~~~~~~~lL~~~~~~DLisfGmIPEfVGRfPVlVplh~L~~~~Lv~VLtEPknaL~~ 460 (564)
T KOG0745|consen 381 LGFGAPSSKGVRANMATKSGVENDAEKRDELLEKVESGDLISFGMIPEFVGRFPVLVPLHSLDEDQLVRVLTEPKNALGK 460 (564)
T ss_pred cccCCCCCccchhhcccccCcchhHHHHHHHHhhccccchhhhcCcHHHhcccceEeeccccCHHHHHHHHhcchhhHHH
Confidence 00 02456666676 56889999999988877542
Q ss_pred -----HHHcC--CCCCHHHHHHHHHHc---CCCHHHHHHHHHHHHHhc
Q 017884 213 -----IEAEG--LDVTEGGLAALVRLC---NGDMRKALNILQSTHMAS 250 (364)
Q Consensus 213 -----~~~~~--~~i~~~~~~~l~~~~---~g~~r~a~~~l~~~~~~~ 250 (364)
+...+ +.+++++++.+++.+ +.-.|.+..+++++.+.+
T Consensus 461 Qyk~lf~~~nV~L~fTe~Al~~IAq~Al~r~TGARgLRsIlE~~Llea 508 (564)
T KOG0745|consen 461 QYKKLFGMDNVELHFTEKALEAIAQLALKRKTGARGLRSILESLLLEA 508 (564)
T ss_pred HHHHHhccCCeeEEecHHHHHHHHHHHHhhccchHHHHHHHHHHHhhh
Confidence 11222 357899999999886 445788888888877654
No 247
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.89 E-value=1.5e-08 Score=87.91 Aligned_cols=129 Identities=16% Similarity=0.274 Sum_probs=76.8
Q ss_pred hccCCCCCcchhc----cHHHHHHHHHHHhcCC--CCcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCCCCh
Q 017884 45 EKYRPQSLADVAA----HRDIVDTIDRLTSENR--LPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGI 118 (364)
Q Consensus 45 ~~~~p~~~~~~vg----~~~~~~~l~~~~~~~~--~~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~ 118 (364)
+.|++.+|+.+.. +..++..+..++.+.. ..+++|+|++|+|||+++.++++.+...+.. ++.++..+
T Consensus 64 ~~~~~~tFdnf~~~~~~q~~al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~~g~~--v~~it~~~---- 137 (244)
T PRK07952 64 PLHQNCSFENYRVECEGQMNALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLRGKS--VLIITVAD---- 137 (244)
T ss_pred ccccCCccccccCCCchHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHhcCCe--EEEEEHHH----
Confidence 4566778888863 3345566666665432 2359999999999999999999998765443 33333221
Q ss_pred HHHHHHHHHHHhcCcc----ccCCccceEEEEEeCCCCCC--HHHHHHHHHHHHHhc-cCccEEEEeecc
Q 017884 119 DVVRQQIQDFASTQSF----SFGVKASVKLVLLDEADAMT--KDAQFALRRVIEKYT-KNTRFALICNQV 181 (364)
Q Consensus 119 ~~~~~~i~~~~~~~~~----~~~~~~~~~viiiDe~~~l~--~~~~~~L~~~le~~~-~~~~~Il~~~~~ 181 (364)
+...+......... .+.......+|+|||++... .-....|..+++... .....|++||..
T Consensus 138 --l~~~l~~~~~~~~~~~~~~l~~l~~~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl~ 205 (244)
T PRK07952 138 --IMSAMKDTFSNSETSEEQLLNDLSNVDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNSN 205 (244)
T ss_pred --HHHHHHHHHhhccccHHHHHHHhccCCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCCC
Confidence 11111110000000 00001136799999997774 334567888888654 356678888743
No 248
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.88 E-value=7.4e-08 Score=87.69 Aligned_cols=164 Identities=13% Similarity=0.097 Sum_probs=104.3
Q ss_pred CCcchhccHHHHHHHHHHHhcCCCCcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCCC--------------
Q 017884 51 SLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDR-------------- 116 (364)
Q Consensus 51 ~~~~~vg~~~~~~~l~~~~~~~~~~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~-------------- 116 (364)
-|..++|++.....|--..-..+...+||.|+.|+||||++++++..|.....- .-..+++....
T Consensus 15 pf~aivGqd~lk~aL~l~av~P~iggvLI~G~kGtaKSt~~Rala~LLp~~~~V-~gc~f~cdP~~P~~~c~~c~~k~~e 93 (423)
T COG1239 15 PFTAIVGQDPLKLALGLNAVDPQIGGALIAGEKGTAKSTLARALADLLPEIEVV-IGCPFNCDPDDPEEMCDECRAKGDE 93 (423)
T ss_pred chhhhcCchHHHHHHhhhhcccccceeEEecCCCccHHHHHHHHHHhCCcccee-cCCCCCCCCCChhhhhHHHHhhccc
Confidence 377899999999987666666677779999999999999999999987422100 00001111000
Q ss_pred --------------------ChH------HHHHHHHHHHhcCccccCCccceEEEEEeCCCCCCHHHHHHHHHHHHHh--
Q 017884 117 --------------------GID------VVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKY-- 168 (364)
Q Consensus 117 --------------------~~~------~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~-- 168 (364)
..+ ++...++.-.....+..-..++++|++|||+..|....++.|+..+++.
T Consensus 94 ~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~AnRGIlYvDEvnlL~d~lvd~LLd~aaeG~n 173 (423)
T COG1239 94 LEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARANRGILYVDEVNLLDDHLVDALLDVAAEGVN 173 (423)
T ss_pred cccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhccCCEEEEeccccccHHHHHHHHHHHHhCCc
Confidence 000 1111122111111111112357899999999999999999999999973
Q ss_pred -----------ccCccEEEEeecc-ccCchhhhccc-eEEEecCCC-hHHHHHHHHHHHHH
Q 017884 169 -----------TKNTRFALICNQV-NKIIPALQSRC-TRFRFAPLE-PVHVTERLKHVIEA 215 (364)
Q Consensus 169 -----------~~~~~~Il~~~~~-~~l~~~l~sr~-~~i~~~~~~-~~~~~~~l~~~~~~ 215 (364)
|.++.+|.+.|.. ..+.++|+.|+ ..+...++. .++...++.+...-
T Consensus 174 ~vereGisi~hpa~fvligTmNPEeGeLrpqLlDRfg~~v~~~~~~~~~~rv~Ii~r~~~f 234 (423)
T COG1239 174 DVEREGISIRHPARFLLIGTMNPEEGELRPQLLDRFGLEVDTHYPLDLEERVEIIRRRLAF 234 (423)
T ss_pred eeeeCceeeccCccEEEEeecCccccccchhhHhhhcceeeccCCCCHHHHHHHHHHHHHh
Confidence 3344455555543 37899999996 666665554 56667777666543
No 249
>KOG0482 consensus DNA replication licensing factor, MCM7 component [Replication, recombination and repair]
Probab=98.85 E-value=4.1e-07 Score=84.01 Aligned_cols=266 Identities=19% Similarity=0.212 Sum_probs=156.2
Q ss_pred cchhccHHHHHHHHHHHhcCC--CC----------cEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCCCChHH
Q 017884 53 ADVAAHRDIVDTIDRLTSENR--LP----------HLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDV 120 (364)
Q Consensus 53 ~~~vg~~~~~~~l~~~~~~~~--~~----------~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 120 (364)
-++.||+++++.|.-++-++. .+ ++++.|.||+.|+.+...+.+-... -++-++....|+..
T Consensus 342 PEIyGheDVKKaLLLlLVGgvd~~~~dGMKIRGdINicLmGDPGVAKSQLLkyi~rlapR------gvYTTGrGSSGVGL 415 (721)
T KOG0482|consen 342 PEIYGHEDVKKALLLLLVGGVDKSPGDGMKIRGDINICLMGDPGVAKSQLLKYISRLAPR------GVYTTGRGSSGVGL 415 (721)
T ss_pred hhhccchHHHHHHHHHhhCCCCCCCCCCceeecceeEEecCCCchhHHHHHHHHHhcCcc------cceecCCCCCcccc
Confidence 478999999999888776541 11 3899999999999999999876321 11222222222221
Q ss_pred HHHHHHHHH-hcCccccCC----ccceEEEEEeCCCCCCHHHHHHHHHHHHHhc-------------cCccEEEEeeccc
Q 017884 121 VRQQIQDFA-STQSFSFGV----KASVKLVLLDEADAMTKDAQFALRRVIEKYT-------------KNTRFALICNQVN 182 (364)
Q Consensus 121 ~~~~i~~~~-~~~~~~~~~----~~~~~viiiDe~~~l~~~~~~~L~~~le~~~-------------~~~~~Il~~~~~~ 182 (364)
--...++-. .... +.. .++.+|..|||+|+|.+....++-+.||... ..|.++.++|+..
T Consensus 416 TAAVmkDpvTgEM~--LEGGALVLAD~GICCIDEfDKM~e~DRtAIHEVMEQQTISIaKAGI~TtLNAR~sILaAANPay 493 (721)
T KOG0482|consen 416 TAAVMKDPVTGEMV--LEGGALVLADGGICCIDEFDKMDESDRTAIHEVMEQQTISIAKAGINTTLNARTSILAAANPAY 493 (721)
T ss_pred chhhhcCCCCCeeE--eccceEEEccCceEeehhhhhhhhhhhHHHHHHHHhhhhhhhhhccccchhhhHHhhhhcCccc
Confidence 111111100 0000 000 1257799999999999998899999998642 3344555554321
Q ss_pred -------------cCchhhhccceE-------------------------------EEecCCChHHHHHHHHHHHHHcCC
Q 017884 183 -------------KIIPALQSRCTR-------------------------------FRFAPLEPVHVTERLKHVIEAEGL 218 (364)
Q Consensus 183 -------------~l~~~l~sr~~~-------------------------------i~~~~~~~~~~~~~l~~~~~~~~~ 218 (364)
.++.+|.|||.+ ..|.|++.+-++.+|. .|+..+.
T Consensus 494 GRYnprrs~e~NI~LPaALLSRFDll~Li~D~pdrd~D~~LA~HiTyVH~H~~qp~~~fepl~~~~mR~yI~-~ak~~~P 572 (721)
T KOG0482|consen 494 GRYNPRRSPEQNINLPAALLSRFDLLWLIQDRPDRDNDLRLAQHITYVHQHEEQPPLDFEPLDPNLMRRYIS-LAKRKNP 572 (721)
T ss_pred cccCcccChhHhcCCcHHHHHhhhhhhhhccCCcccchHHHHHHhHhhhccCCCCCccCCCCCHHHHHHHHH-HHhhcCC
Confidence 467788888531 5677788888888876 4677777
Q ss_pred CCCHHHHHHHHHHc--------------CCCHHHHHHHHHHHHHh-----cccCchHHHHHhcCCC------ChHHHHHH
Q 017884 219 DVTEGGLAALVRLC--------------NGDMRKALNILQSTHMA-----SQQITEEAVYLCTGNP------LPKDIEQI 273 (364)
Q Consensus 219 ~i~~~~~~~l~~~~--------------~g~~r~a~~~l~~~~~~-----~~~i~~~~v~~~~~~~------~~~~~~~l 273 (364)
.++++..+++.... .-.+|.++.++..-... ...+..++|.+++... ...+ ..-
T Consensus 573 ~vp~~l~dyi~~AYv~~Rrea~~~~~~t~ttpRtLL~IlRls~AlarLRls~~V~~~DV~EALRLme~sK~sL~~~-~~~ 651 (721)
T KOG0482|consen 573 VVPEALADYITGAYVELRREARSSKDFTYTTPRTLLGILRLSTALARLRLSDSVEEDDVNEALRLMEMSKDSLYQD-DGQ 651 (721)
T ss_pred CCCHHHHHHHHHHHHHHHHHhhccCCCcccCHHHHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHhhhcccccc-ccc
Confidence 88888888876431 24577777777533222 2466677776654211 0000 000
Q ss_pred HHHHHhccHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHH
Q 017884 274 SYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADI 331 (364)
Q Consensus 274 ~~~l~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~i~~~l~~~ 331 (364)
... .......+.++.++..+.|.....+-..+.+..++ +|++..+..-++...++
T Consensus 652 ~~~--~~~~~~if~iirel~~e~g~~~v~~s~~~~r~~~k-Gfs~~ql~~~i~ey~~l 706 (721)
T KOG0482|consen 652 KED--TSATDAIFAIIRELAGEGGKRCVKLSNAEQRCVRK-GFSEAQLKKCIDEYAEL 706 (721)
T ss_pred ccc--cchHHHHHHHHHHHHhhcCCceeeHHHHHHHHHHc-CCCHHHHHHHHHHHHhc
Confidence 000 01133456677777644555555555555555544 78888777666655443
No 250
>PF05729 NACHT: NACHT domain
Probab=98.84 E-value=4e-08 Score=80.64 Aligned_cols=138 Identities=14% Similarity=0.194 Sum_probs=80.8
Q ss_pred EEEeCCCCccHHHHHHHHHHHHcCCCCCC----cEEEEeCCCCCCh---HHHHHHHHHHHhcCccc-------cCCccce
Q 017884 77 LLLYGPPGTGKTSTILAVARKLYGAQYHN----MILELNASDDRGI---DVVRQQIQDFASTQSFS-------FGVKASV 142 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l~~~~~~~----~~~~~~~~~~~~~---~~~~~~i~~~~~~~~~~-------~~~~~~~ 142 (364)
++|+|++|+|||++++.++..+....... .++.+........ ..+.+.+.......... .....+.
T Consensus 3 l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 82 (166)
T PF05729_consen 3 LWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKNKR 82 (166)
T ss_pred EEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcCCc
Confidence 68999999999999999999886554322 2223332221111 12222232211111000 0112256
Q ss_pred EEEEEeCCCCCCHHHH--------HHHHHHHHH-hccCccEEEEeecccc-CchhhhccceEEEecCCChHHHHHHHHHH
Q 017884 143 KLVLLDEADAMTKDAQ--------FALRRVIEK-YTKNTRFALICNQVNK-IIPALQSRCTRFRFAPLEPVHVTERLKHV 212 (364)
Q Consensus 143 ~viiiDe~~~l~~~~~--------~~L~~~le~-~~~~~~~Il~~~~~~~-l~~~l~sr~~~i~~~~~~~~~~~~~l~~~ 212 (364)
-+++||.+|.+..... +.|..++.. .++++++++++..... -..........+.+.+++++++.+++.++
T Consensus 83 ~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 162 (166)
T PF05729_consen 83 VLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEEDIKQYLRKY 162 (166)
T ss_pred eEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHHHHHHHHHH
Confidence 7999999999976332 345556665 3557778777753321 12222222367899999999999999887
Q ss_pred HH
Q 017884 213 IE 214 (364)
Q Consensus 213 ~~ 214 (364)
.+
T Consensus 163 f~ 164 (166)
T PF05729_consen 163 FS 164 (166)
T ss_pred hh
Confidence 64
No 251
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.83 E-value=5.6e-09 Score=86.61 Aligned_cols=95 Identities=26% Similarity=0.367 Sum_probs=58.2
Q ss_pred CCcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCC-------CChHHHHHHHHHHHhcCccccCCccceEEEE
Q 017884 74 LPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDD-------RGIDVVRQQIQDFASTQSFSFGVKASVKLVL 146 (364)
Q Consensus 74 ~~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~-------~~~~~~~~~i~~~~~~~~~~~~~~~~~~vii 146 (364)
..+++|+||+|+|||++|.++++++...+....++. ..+. .........+..+. +..++|
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~--~~~L~~~l~~~~~~~~~~~~~~~l~-----------~~dlLi 113 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFIT--ASDLLDELKQSRSDGSYEELLKRLK-----------RVDLLI 113 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEE--HHHHHHHHHCCHCCTTHCHHHHHHH-----------TSSCEE
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEee--cCceeccccccccccchhhhcCccc-----------cccEec
Confidence 356999999999999999999999876555443333 2110 00011111222221 366999
Q ss_pred EeCCCCCC--HHHHHHHHHHHHHhccCccEEEEeecc
Q 017884 147 LDEADAMT--KDAQFALRRVIEKYTKNTRFALICNQV 181 (364)
Q Consensus 147 iDe~~~l~--~~~~~~L~~~le~~~~~~~~Il~~~~~ 181 (364)
|||+.... +...+.|+++++....+...|++||..
T Consensus 114 lDDlG~~~~~~~~~~~l~~ii~~R~~~~~tIiTSN~~ 150 (178)
T PF01695_consen 114 LDDLGYEPLSEWEAELLFEIIDERYERKPTIITSNLS 150 (178)
T ss_dssp EETCTSS---HHHHHCTHHHHHHHHHT-EEEEEESS-
T ss_pred ccccceeeecccccccchhhhhHhhcccCeEeeCCCc
Confidence 99987664 556777888988765555678888743
No 252
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.81 E-value=9.9e-08 Score=75.71 Aligned_cols=95 Identities=27% Similarity=0.321 Sum_probs=57.7
Q ss_pred CcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCCCC--------------------hHHHHHHHHHHHhcCcc
Q 017884 75 PHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRG--------------------IDVVRQQIQDFASTQSF 134 (364)
Q Consensus 75 ~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~i~~~~~~~~~ 134 (364)
.+++|+||+|+|||++++.++..+.... ..++.++...... ..... .+...+...
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-- 77 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPG--GGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLR-LALALARKL-- 77 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCC--CCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHH-HHHHHHHhc--
Confidence 4689999999999999999999986543 2344444432111 11111 122222210
Q ss_pred ccCCccceEEEEEeCCCCCCHHHHHHHHH--------HHHHhccCccEEEEeec
Q 017884 135 SFGVKASVKLVLLDEADAMTKDAQFALRR--------VIEKYTKNTRFALICNQ 180 (364)
Q Consensus 135 ~~~~~~~~~viiiDe~~~l~~~~~~~L~~--------~le~~~~~~~~Il~~~~ 180 (364)
.+.+|++||++.+.......... ..........+|++++.
T Consensus 78 ------~~~viiiDei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 125 (148)
T smart00382 78 ------KPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTND 125 (148)
T ss_pred ------CCCEEEEECCcccCCHHHHHHHHhhhhhHHHHHHHhcCCCEEEEEeCC
Confidence 24899999999998665554332 23334456667777764
No 253
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=98.78 E-value=5.2e-08 Score=89.94 Aligned_cols=114 Identities=22% Similarity=0.229 Sum_probs=69.9
Q ss_pred CCCcchhccHHHHHHHHHHHhcCCCCcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEe------CCCCCC------
Q 017884 50 QSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELN------ASDDRG------ 117 (364)
Q Consensus 50 ~~~~~~vg~~~~~~~l~~~~~~~~~~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~------~~~~~~------ 117 (364)
..|.|++||+..+..+.-...++ .|++++||||||||.+|..+..-+..... ...++++ +....+
T Consensus 176 ~D~~DV~GQ~~AKrAleiAAAGg--HnLl~~GpPGtGKTmla~Rl~~lLPpls~-~E~lE~s~I~s~~g~~~~~~~~~~~ 252 (490)
T COG0606 176 PDFKDVKGQEQAKRALEIAAAGG--HNLLLVGPPGTGKTMLASRLPGLLPPLSI-PEALEVSAIHSLAGDLHEGCPLKIH 252 (490)
T ss_pred cchhhhcCcHHHHHHHHHHHhcC--CcEEEecCCCCchHHhhhhhcccCCCCCh-HHHHHHHHHhhhcccccccCcccee
Confidence 47999999999999998888877 56999999999999999999776522110 0000100 000000
Q ss_pred --------hHHHHHHHHHHHhcCccccCCccceEEEEEeCCCCCCHHHHHHHHHHHHH
Q 017884 118 --------IDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEK 167 (364)
Q Consensus 118 --------~~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~ 167 (364)
.......+.......|- --..++++|+++||+-.+.....++|+.=||+
T Consensus 253 rPFr~PHHsaS~~aLvGGG~~p~PG-eIsLAH~GVLFLDElpef~~~iLe~LR~PLE~ 309 (490)
T COG0606 253 RPFRAPHHSASLAALVGGGGVPRPG-EISLAHNGVLFLDELPEFKRSILEALREPLEN 309 (490)
T ss_pred CCccCCCccchHHHHhCCCCCCCCC-ceeeecCCEEEeeccchhhHHHHHHHhCcccc
Confidence 00001111111000000 00123688999999999998888888887775
No 254
>PRK09183 transposase/IS protein; Provisional
Probab=98.77 E-value=2.1e-08 Score=88.46 Aligned_cols=97 Identities=20% Similarity=0.261 Sum_probs=58.9
Q ss_pred CcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCCCChHHHHH-----HHHHHHhcCccccCCccceEEEEEeC
Q 017884 75 PHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQ-----QIQDFASTQSFSFGVKASVKLVLLDE 149 (364)
Q Consensus 75 ~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~i~~~~~~~~~~~~~~~~~~viiiDe 149 (364)
.+++|+||+|+|||+++.+++..+...+. .+..++.... ...+.. .+....... . ....+++|||
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a~~~G~--~v~~~~~~~l--~~~l~~a~~~~~~~~~~~~~---~---~~~dlLiiDd 172 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEAVRAGI--KVRFTTAADL--LLQLSTAQRQGRYKTTLQRG---V---MAPRLLIIDE 172 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHcCC--eEEEEeHHHH--HHHHHHHHHCCcHHHHHHHH---h---cCCCEEEEcc
Confidence 46999999999999999999887654443 3333332210 001100 011111000 0 1356999999
Q ss_pred CCCC--CHHHHHHHHHHHHHhccCccEEEEeecc
Q 017884 150 ADAM--TKDAQFALRRVIEKYTKNTRFALICNQV 181 (364)
Q Consensus 150 ~~~l--~~~~~~~L~~~le~~~~~~~~Il~~~~~ 181 (364)
++.. .....+.|+.+++.......+|++||.+
T Consensus 173 lg~~~~~~~~~~~lf~li~~r~~~~s~iiTsn~~ 206 (259)
T PRK09183 173 IGYLPFSQEEANLFFQVIAKRYEKGSMILTSNLP 206 (259)
T ss_pred cccCCCChHHHHHHHHHHHHHHhcCcEEEecCCC
Confidence 9875 4556678999988755555688888653
No 255
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.76 E-value=1.3e-07 Score=85.97 Aligned_cols=137 Identities=19% Similarity=0.247 Sum_probs=78.3
Q ss_pred HHHHHHHHHhcC--CCCcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCCCChHHHHHHHHHHHhcCccccCC
Q 017884 61 IVDTIDRLTSEN--RLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGV 138 (364)
Q Consensus 61 ~~~~l~~~~~~~--~~~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 138 (364)
++.....++.+. ...+++|+||+|+|||+++.++++++...+. .++.++.... ...+...-..........+..
T Consensus 168 ~~~~~~~f~~~f~~~~~~Lll~G~~GtGKThLa~aIa~~l~~~g~--~V~y~t~~~l--~~~l~~~~~~~~~~~~~~~~~ 243 (329)
T PRK06835 168 ILEKCKNFIENFDKNNENLLFYGNTGTGKTFLSNCIAKELLDRGK--SVIYRTADEL--IEILREIRFNNDKELEEVYDL 243 (329)
T ss_pred HHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHHHCCC--eEEEEEHHHH--HHHHHHHHhccchhHHHHHHH
Confidence 444445555531 2256999999999999999999999876544 4455543221 111111000000000000000
Q ss_pred ccceEEEEEeCCCCC--CHHHHHHHHHHHHHhcc-CccEEEEeeccc-----cCchhhhcc----ceEEEecCCC
Q 017884 139 KASVKLVLLDEADAM--TKDAQFALRRVIEKYTK-NTRFALICNQVN-----KIIPALQSR----CTRFRFAPLE 201 (364)
Q Consensus 139 ~~~~~viiiDe~~~l--~~~~~~~L~~~le~~~~-~~~~Il~~~~~~-----~l~~~l~sr----~~~i~~~~~~ 201 (364)
.....++||||+... ++..+..|+.+++.... ...+|++||... .+.+.+.|| +.++.|...+
T Consensus 244 l~~~DLLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl~~~el~~~~~eri~SRL~~~~~~i~~~G~d 318 (329)
T PRK06835 244 LINCDLLIIDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTNLSLEELLKTYSERISSRLLGNFTLLKFYGED 318 (329)
T ss_pred hccCCEEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHhHHHHHHHHcCCEEEEecCcC
Confidence 114679999999555 56677889999987654 456788887432 133456665 4567765433
No 256
>PRK06921 hypothetical protein; Provisional
Probab=98.76 E-value=9.2e-08 Score=84.58 Aligned_cols=120 Identities=18% Similarity=0.200 Sum_probs=69.4
Q ss_pred CCcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCCCChHHHHHHHHHHHhcCccccCCccceEEEEEeCCCC-
Q 017884 74 LPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADA- 152 (364)
Q Consensus 74 ~~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~- 152 (364)
..+++|+|++|+|||+++.++++++.... +..++.++... ....+............. +. ...+|||||++.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~-g~~v~y~~~~~--l~~~l~~~~~~~~~~~~~-~~---~~dlLiIDDl~~~ 189 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKK-GVPVLYFPFVE--GFGDLKDDFDLLEAKLNR-MK---KVEVLFIDDLFKP 189 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhc-CceEEEEEHHH--HHHHHHHHHHHHHHHHHH-hc---CCCEEEEeccccc
Confidence 35599999999999999999999986541 23444444322 111222111111110000 11 367999999944
Q ss_pred ------CCHHHHHHHHHHHHHhcc-CccEEEEeeccc----cCchhhhcc----c--eEEEecCC
Q 017884 153 ------MTKDAQFALRRVIEKYTK-NTRFALICNQVN----KIIPALQSR----C--TRFRFAPL 200 (364)
Q Consensus 153 ------l~~~~~~~L~~~le~~~~-~~~~Il~~~~~~----~l~~~l~sr----~--~~i~~~~~ 200 (364)
.+.-.+..|+.+++.... ...+|++||... .+.+.+.+| + .++.|...
T Consensus 190 ~~g~e~~t~~~~~~lf~iin~R~~~~k~tIitsn~~~~el~~~~~~l~sRi~~r~~~~~i~~~g~ 254 (266)
T PRK06921 190 VNGKPRATEWQIEQMYSVLNYRYLNHKPILISSELTIDELLDIDEALGSRIVEMCKDYLVIIKGD 254 (266)
T ss_pred cCCCccCCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHhhhhhHHHHHHHHhccCeEEEecCc
Confidence 444456788888887653 356778886433 223455554 3 35666543
No 257
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.75 E-value=6.2e-07 Score=93.73 Aligned_cols=185 Identities=14% Similarity=0.173 Sum_probs=113.5
Q ss_pred CCCCcchhccHHHHHHHHHHHhcCCCCcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCCCChHHHHHHHHHH
Q 017884 49 PQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDF 128 (364)
Q Consensus 49 p~~~~~~vg~~~~~~~l~~~~~~~~~~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 128 (364)
|..-..++-++.....|... ...+.++|+||+|+|||+++..++... + ....+.++..+......+...+..+
T Consensus 10 p~~~~~~~~R~rl~~~l~~~---~~~~~~~v~apaG~GKTtl~~~~~~~~---~-~~~w~~l~~~d~~~~~f~~~l~~~l 82 (903)
T PRK04841 10 PVRLHNTVVRERLLAKLSGA---NNYRLVLVTSPAGYGKTTLISQWAAGK---N-NLGWYSLDESDNQPERFASYLIAAL 82 (903)
T ss_pred CCCccccCcchHHHHHHhcc---cCCCeEEEECCCCCCHHHHHHHHHHhC---C-CeEEEecCcccCCHHHHHHHHHHHH
Confidence 44456677788777776432 233447999999999999999988653 1 2333333333322111111111111
Q ss_pred HhcCcc--------------------------ccCCccceEEEEEeCCCCCCHHH-HHHHHHHHHHhccCccEEEEeecc
Q 017884 129 ASTQSF--------------------------SFGVKASVKLVLLDEADAMTKDA-QFALRRVIEKYTKNTRFALICNQV 181 (364)
Q Consensus 129 ~~~~~~--------------------------~~~~~~~~~viiiDe~~~l~~~~-~~~L~~~le~~~~~~~~Il~~~~~ 181 (364)
....+. .......+-+|||||+|.+.... .+.+..++...+++..+|+++...
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~ 162 (903)
T PRK04841 83 QQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNL 162 (903)
T ss_pred HHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCC
Confidence 000000 00011257899999999997554 456777777778888888887543
Q ss_pred ccC-chhhhccceEEEec----CCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHH
Q 017884 182 NKI-IPALQSRCTRFRFA----PLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNIL 243 (364)
Q Consensus 182 ~~l-~~~l~sr~~~i~~~----~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~a~~~l 243 (364)
..+ ...++-+...+.+. +++.++...++.... |..++++.+..|.+.++|.+-.+.-..
T Consensus 163 ~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~---~~~~~~~~~~~l~~~t~Gwp~~l~l~~ 226 (903)
T PRK04841 163 PPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRL---SSPIEAAESSRLCDDVEGWATALQLIA 226 (903)
T ss_pred CCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhcc---CCCCCHHHHHHHHHHhCChHHHHHHHH
Confidence 222 22333333344444 889999999887643 677899999999999999987654333
No 258
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=98.75 E-value=1.7e-07 Score=89.21 Aligned_cols=171 Identities=19% Similarity=0.207 Sum_probs=111.3
Q ss_pred cEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCCCChHHHHHHHHHHHhcCcc--------ccCCccceEEEEE
Q 017884 76 HLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSF--------SFGVKASVKLVLL 147 (364)
Q Consensus 76 ~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--------~~~~~~~~~viii 147 (364)
++++.|++|+||..+++++...-. ..-.++.+|+... ....+...+..+.....- ..-.....+.+|+
T Consensus 338 pvll~GEtGtGKe~laraiH~~s~---~~gpfvAvNCaAi-p~~liesELFGy~~GafTga~~kG~~g~~~~A~gGtlFl 413 (606)
T COG3284 338 PVLLQGETGTGKEVLARAIHQNSE---AAGPFVAVNCAAI-PEALIESELFGYVAGAFTGARRKGYKGKLEQADGGTLFL 413 (606)
T ss_pred CeEecCCcchhHHHHHHHHHhccc---ccCCeEEEEeccc-hHHhhhHHHhccCccccccchhccccccceecCCCccHH
Confidence 399999999999999999998753 3344566776542 223333333222211100 0011235779999
Q ss_pred eCCCCCCHHHHHHHHHHHHHhc----------cCccEEEEeecc-------ccCchhhhccc--eEEEecCCChH-HHHH
Q 017884 148 DEADAMTKDAQFALRRVIEKYT----------KNTRFALICNQV-------NKIIPALQSRC--TRFRFAPLEPV-HVTE 207 (364)
Q Consensus 148 De~~~l~~~~~~~L~~~le~~~----------~~~~~Il~~~~~-------~~l~~~l~sr~--~~i~~~~~~~~-~~~~ 207 (364)
||+..|+-..|..|++++++.. -+.++|.+|+.. ..+.+.|--|. .++.+||+.+. +...
T Consensus 414 deIgd~p~~~Qs~LLrVl~e~~v~p~g~~~~~vdirvi~ath~dl~~lv~~g~fredLyyrL~~~~i~lP~lr~R~d~~~ 493 (606)
T COG3284 414 DEIGDMPLALQSRLLRVLQEGVVTPLGGTRIKVDIRVIAATHRDLAQLVEQGRFREDLYYRLNAFVITLPPLRERSDRIP 493 (606)
T ss_pred HHhhhchHHHHHHHHHHHhhCceeccCCcceeEEEEEEeccCcCHHHHHHcCCchHHHHHHhcCeeeccCchhcccccHH
Confidence 9999999999999999999742 234556665422 13344444453 56777777653 2333
Q ss_pred HHHHHHHH---cCCCCCHHHHHHHHHH-cCCCHHHHHHHHHHHHHhc
Q 017884 208 RLKHVIEA---EGLDVTEGGLAALVRL-CNGDMRKALNILQSTHMAS 250 (364)
Q Consensus 208 ~l~~~~~~---~~~~i~~~~~~~l~~~-~~g~~r~a~~~l~~~~~~~ 250 (364)
.|.++..+ ....+++++++.|..+ +.||+|.+.+.++.++..+
T Consensus 494 ~l~~~~~~~~~~~~~l~~~~~~~l~~~~WPGNirel~~v~~~~~~l~ 540 (606)
T COG3284 494 LLDRILKRENDWRLQLDDDALARLLAYRWPGNIRELDNVIERLAALS 540 (606)
T ss_pred HHHHHHHHccCCCccCCHHHHHHHHhCCCCCcHHHHHHHHHHHHHcC
Confidence 33333333 3578999999888766 5999999999999888755
No 259
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=3.6e-07 Score=80.51 Aligned_cols=107 Identities=23% Similarity=0.395 Sum_probs=75.5
Q ss_pred ceEEEEEeCCCCCCH------------HHHHHHHHHHHHhc--------cCccEEEEe------eccccCchhhhccc-e
Q 017884 141 SVKLVLLDEADAMTK------------DAQFALRRVIEKYT--------KNTRFALIC------NQVNKIIPALQSRC-T 193 (364)
Q Consensus 141 ~~~viiiDe~~~l~~------------~~~~~L~~~le~~~--------~~~~~Il~~------~~~~~l~~~l~sr~-~ 193 (364)
..++|||||+|.+.. ..|.-|+.+++... .+-.++|++ ..|+.+.|.|.-|+ .
T Consensus 250 ~~GIvFIDEIDKIa~~~~~g~~dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~sKPSDLiPELQGRfPI 329 (444)
T COG1220 250 QNGIVFIDEIDKIAKRGGSGGPDVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHVAKPSDLIPELQGRFPI 329 (444)
T ss_pred hcCeEEEehhhHHHhcCCCCCCCcchhhhcccccccccCceeeccccccccceEEEEecCceecCChhhcChhhcCCCce
Confidence 466999999998842 34667888887532 233455554 57789999999998 6
Q ss_pred EEEecCCChHHHHHHHHH-----------HHHHcCC--CCCHHHHHHHHHHc---C-----CCHHHHHHHHHHHH
Q 017884 194 RFRFAPLEPVHVTERLKH-----------VIEAEGL--DVTEGGLAALVRLC---N-----GDMRKALNILQSTH 247 (364)
Q Consensus 194 ~i~~~~~~~~~~~~~l~~-----------~~~~~~~--~i~~~~~~~l~~~~---~-----g~~r~a~~~l~~~~ 247 (364)
.+++.+++.+++..+|.. .++.+|+ .++++++..|++.+ + =-.|++-..++++.
T Consensus 330 RVEL~~Lt~~Df~rILtep~~sLikQY~aLlkTE~v~l~FtddaI~~iAeiA~~vN~~~ENIGARRLhTvlErlL 404 (444)
T COG1220 330 RVELDALTKEDFERILTEPKASLIKQYKALLKTEGVELEFTDDAIKRIAEIAYQVNEKTENIGARRLHTVLERLL 404 (444)
T ss_pred EEEcccCCHHHHHHHHcCcchHHHHHHHHHHhhcCeeEEecHHHHHHHHHHHHHhcccccchhHHHHHHHHHHHH
Confidence 799999999998887653 2334454 56899999998775 1 12566666666554
No 260
>PF14516 AAA_35: AAA-like domain
Probab=98.69 E-value=1e-05 Score=74.23 Aligned_cols=196 Identities=15% Similarity=0.186 Sum_probs=114.8
Q ss_pred hhccHHHHHHHHHHHhc-CCCCcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCC---CChHHHHHHH-HHHH
Q 017884 55 VAAHRDIVDTIDRLTSE-NRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDD---RGIDVVRQQI-QDFA 129 (364)
Q Consensus 55 ~vg~~~~~~~l~~~~~~-~~~~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~i-~~~~ 129 (364)
.|.++.+-+.+.+.+.+ | ..+.|.||..+|||++...+.+.+...++....+.+..... ...+.+...+ ....
T Consensus 13 Yi~R~~~e~~~~~~i~~~G--~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id~~~~~~~~~~~~~~f~~~~~~~i~ 90 (331)
T PF14516_consen 13 YIERPPAEQECYQEIVQPG--SYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYIDLQQLGSAIFSDLEQFLRWFCEEIS 90 (331)
T ss_pred ccCchHHHHHHHHHHhcCC--CEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEEeecCCCcccCCHHHHHHHHHHHHH
Confidence 45555566666666655 4 34899999999999999999999876665555555543221 1111111111 0111
Q ss_pred hcCcc-------------------------ccCCccceEEEEEeCCCCCCH--HHHHHHHHHHH----Hhc-----cCcc
Q 017884 130 STQSF-------------------------SFGVKASVKLVLLDEADAMTK--DAQFALRRVIE----KYT-----KNTR 173 (364)
Q Consensus 130 ~~~~~-------------------------~~~~~~~~~viiiDe~~~l~~--~~~~~L~~~le----~~~-----~~~~ 173 (364)
..... .......+-|++|||+|.+.. .....++..+. ... ...+
T Consensus 91 ~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~~~~~~~L~ 170 (331)
T PF14516_consen 91 RQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKNNPIWQKLR 170 (331)
T ss_pred HHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcccCcccceEE
Confidence 00000 001112577999999999975 23334444433 221 2234
Q ss_pred EEEEeeccccCchhh-h---ccceEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Q 017884 174 FALICNQVNKIIPAL-Q---SRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMA 249 (364)
Q Consensus 174 ~Il~~~~~~~l~~~l-~---sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~a~~~l~~~~~~ 249 (364)
+|++......+.... . +-+..+.+++.+.+++...+... +...++..++.|...++|.|--....+..++.
T Consensus 171 li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~----~~~~~~~~~~~l~~~tgGhP~Lv~~~~~~l~~- 245 (331)
T PF14516_consen 171 LILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRY----GLEFSQEQLEQLMDWTGGHPYLVQKACYLLVE- 245 (331)
T ss_pred EEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhh----hccCCHHHHHHHHHHHCCCHHHHHHHHHHHHH-
Confidence 555543222111111 1 23566889999999998776654 67788889999999999999777666666653
Q ss_pred cccCchHHH
Q 017884 250 SQQITEEAV 258 (364)
Q Consensus 250 ~~~i~~~~v 258 (364)
..++.+.+
T Consensus 246 -~~~~~~~l 253 (331)
T PF14516_consen 246 -EQITLEQL 253 (331)
T ss_pred -ccCcHHHH
Confidence 34554443
No 261
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=98.67 E-value=2e-06 Score=73.33 Aligned_cols=182 Identities=19% Similarity=0.222 Sum_probs=113.8
Q ss_pred ccHHHHHHHHHHHhcCCCCcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCCCChHHH---------------
Q 017884 57 AHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVV--------------- 121 (364)
Q Consensus 57 g~~~~~~~l~~~~~~~~~~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~--------------- 121 (364)
-+...+..+...+..++ .-+.++|+.|+|||.+.+++...+.+.. ..++.++..........
T Consensus 35 ~h~e~l~~l~~~i~d~q-g~~~vtGevGsGKTv~~Ral~~s~~~d~--~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~ 111 (269)
T COG3267 35 DHNEALLMLHAAIADGQ-GILAVTGEVGSGKTVLRRALLASLNEDQ--VAVVVIDKPTLSDATLLEAIVADLESQPKVNV 111 (269)
T ss_pred hhhHHHHHHHHHHhcCC-ceEEEEecCCCchhHHHHHHHHhcCCCc--eEEEEecCcchhHHHHHHHHHHHhccCccchh
Confidence 35666777777777764 2379999999999999997777664322 22233333222111111
Q ss_pred ---HHHHHHHHhcCccccCCccceEEEEEeCCCCCCHHHHHHHHHHHHH---hccCccEEEEeeccc------cCchhhh
Q 017884 122 ---RQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEK---YTKNTRFALICNQVN------KIIPALQ 189 (364)
Q Consensus 122 ---~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~---~~~~~~~Il~~~~~~------~l~~~l~ 189 (364)
...+....... ......+-++++||++.+..+..+.|+.+.+- ......+++++.+.- -....+.
T Consensus 112 ~~~~e~~~~~L~al---~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~ 188 (269)
T COG3267 112 NAVLEQIDRELAAL---VKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELE 188 (269)
T ss_pred HHHHHHHHHHHHHH---HHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhh
Confidence 11111111100 01111347999999999999988887776653 223334566652210 1123455
Q ss_pred ccceE-EEecCCChHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHHHHH
Q 017884 190 SRCTR-FRFAPLEPVHVTERLKHVIEAEGL---DVTEGGLAALVRLCNGDMRKALNILQ 244 (364)
Q Consensus 190 sr~~~-i~~~~~~~~~~~~~l~~~~~~~~~---~i~~~~~~~l~~~~~g~~r~a~~~l~ 244 (364)
.|+.+ +..+|++.++...+|+.+++..+. -++++++..+...+.|-|+..-+.+.
T Consensus 189 ~R~~ir~~l~P~~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~ 247 (269)
T COG3267 189 QRIDIRIELPPLTEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLAT 247 (269)
T ss_pred heEEEEEecCCcChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHH
Confidence 68866 999999999999999999887643 35899999999999996665554443
No 262
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=98.66 E-value=8.8e-07 Score=86.37 Aligned_cols=204 Identities=16% Similarity=0.125 Sum_probs=122.5
Q ss_pred cHHHHHHHHHHHhcC-CCCcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCC--CChHHHHHHHHHHHhcCcc
Q 017884 58 HRDIVDTIDRLTSEN-RLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDD--RGIDVVRQQIQDFASTQSF 134 (364)
Q Consensus 58 ~~~~~~~l~~~~~~~-~~~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~i~~~~~~~~~ 134 (364)
|++.+..|.-..-+. ....++|.|+.|+||+++++.++..+... ..+.-...+.+.. .|.-++...+..-......
T Consensus 8 ~~~~~~Al~l~av~p~~~gGv~i~g~~G~~ks~~~r~l~~llp~~-~p~r~~p~~~t~~~L~Gg~Dl~~~l~~g~~~~~p 86 (584)
T PRK13406 8 WADAALAAALLAVDPAGLGGVVLRARAGPVRDRWLAALRALLPAG-TPLRRLPPGIADDRLLGGLDLAATLRAGRPVAQR 86 (584)
T ss_pred HHHHHHHHHHhCcCccccceEEEEcCCCcHHHHHHHHHHHhcCCC-CCcccCCCCCcHHHccCCchHHhHhhcCCcCCCC
Confidence 445555554444444 56679999999999999999999887431 1111112222221 1222222222221111111
Q ss_pred ccCCccceEEEEEeCCCCCCHHHHHHHHHHHHHhcc-----------CccEEEEee-----ccccCchhhhccc-eEEEe
Q 017884 135 SFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTK-----------NTRFALICN-----QVNKIIPALQSRC-TRFRF 197 (364)
Q Consensus 135 ~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~-----------~~~~Il~~~-----~~~~l~~~l~sr~-~~i~~ 197 (364)
..-...+++|++|||+..+.+..++.|+..|++... ...|++++. +...+.+++..|+ ..+.+
T Consensus 87 Glla~Ah~GvL~lDe~n~~~~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~~~L~~~lLDRf~l~v~v 166 (584)
T PRK13406 87 GLLAEADGGVLVLAMAERLEPGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEEDERAPAALADRLAFHLDL 166 (584)
T ss_pred CceeeccCCEEEecCcccCCHHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcccCCCHHhHhheEEEEEc
Confidence 111234678999999999999999999999997421 123444442 2235888999998 66888
Q ss_pred cCCChHHHH-------HHHHHHHHHcCCCCCHHHHHHHHHHc---CC-CHHHHHHHHHHHHHhc-----ccCchHHHHHh
Q 017884 198 APLEPVHVT-------ERLKHVIEAEGLDVTEGGLAALVRLC---NG-DMRKALNILQSTHMAS-----QQITEEAVYLC 261 (364)
Q Consensus 198 ~~~~~~~~~-------~~l~~~~~~~~~~i~~~~~~~l~~~~---~g-~~r~a~~~l~~~~~~~-----~~i~~~~v~~~ 261 (364)
..++..+.. +++..+..-.++.++++.+++++..+ +- ..|..+.++..+...+ ..|+.++|..+
T Consensus 167 ~~~~~~~~~~~~~~~~~I~~AR~rl~~v~v~~~~l~~i~~~~~~~gv~S~Ra~i~llraARa~AaL~Gr~~V~~~dv~~A 246 (584)
T PRK13406 167 DGLALRDAREIPIDADDIAAARARLPAVGPPPEAIAALCAAAAALGIASLRAPLLALRAARAAAALAGRTAVEEEDLALA 246 (584)
T ss_pred CCCChHHhcccCCCHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHHHcCCCCCCHHHHHHH
Confidence 777654432 22222222247889999999888765 32 5677776665444322 48888888765
Q ss_pred c
Q 017884 262 T 262 (364)
Q Consensus 262 ~ 262 (364)
.
T Consensus 247 a 247 (584)
T PRK13406 247 A 247 (584)
T ss_pred H
Confidence 4
No 263
>PRK04132 replication factor C small subunit; Provisional
Probab=98.65 E-value=1.7e-08 Score=101.15 Aligned_cols=51 Identities=45% Similarity=0.903 Sum_probs=48.4
Q ss_pred CCCChhhccCCCCCcchhccHHHHHHHHHHHhcCCCCcEEEeCCCCccHHH
Q 017884 39 KASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTS 89 (364)
Q Consensus 39 ~~~~~~~~~~p~~~~~~vg~~~~~~~l~~~~~~~~~~~lll~G~~G~GKt~ 89 (364)
.+.||+++|||.+|+|++||+.+++.|+.++..+..+|++|+||||+||+.
T Consensus 5 ~~~~~~~k~RP~~f~dIiGqe~i~~~Lk~~i~~~~i~h~l~~g~~g~~~cl 55 (846)
T PRK04132 5 LEKPWVEKYRPQRLDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKCL 55 (846)
T ss_pred hcccHHHhhCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEECCCCCCccc
Confidence 357999999999999999999999999999999999999999999999964
No 264
>PHA00729 NTP-binding motif containing protein
Probab=98.65 E-value=2.2e-07 Score=78.94 Aligned_cols=121 Identities=20% Similarity=0.283 Sum_probs=70.3
Q ss_pred HHHHHhcCCCCcEEEeCCCCccHHHHHHHHHHHHcCCCC-----------CCcEEEEeCCCCCChHHHHHHHHHHHhcCc
Q 017884 65 IDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQY-----------HNMILELNASDDRGIDVVRQQIQDFASTQS 133 (364)
Q Consensus 65 l~~~~~~~~~~~lll~G~~G~GKt~la~~l~~~l~~~~~-----------~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 133 (364)
....+..+...+++|+|+||+|||++|.++++.+..... ...+..+ ..+.+...+.......
T Consensus 8 ~~~~l~~~~f~nIlItG~pGvGKT~LA~aLa~~l~~~l~~l~~~~~~~d~~~~~~fi------d~~~Ll~~L~~a~~~~- 80 (226)
T PHA00729 8 IVSAYNNNGFVSAVIFGKQGSGKTTYALKVARDVFWKLNNLSTKDDAWQYVQNSYFF------ELPDALEKIQDAIDND- 80 (226)
T ss_pred HHHHHhcCCeEEEEEECCCCCCHHHHHHHHHHHHHhhcccccchhhHHhcCCcEEEE------EHHHHHHHHHHHHhcC-
Confidence 334445555567999999999999999999998741100 0011111 1233334443322110
Q ss_pred cccCCccceEEEEEeCCCCCCHHHHHHHHHHHHHhccCccEEEEeeccccCchhhhccceEEEecCCChHHHHHHHHHH
Q 017884 134 FSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHV 212 (364)
Q Consensus 134 ~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~ 212 (364)
....++||||+..-..... .+... + .....+.+.+++|+..+.|.+++++++...++.+
T Consensus 81 ------~~~dlLIIDd~G~~~~~~~--------wh~~~----~--~~yf~L~~aLrSR~~l~il~~ls~edL~~~Lr~R 139 (226)
T PHA00729 81 ------YRIPLIIFDDAGIWLSKYV--------WYEDY----M--KTFYKIYALIRTRVSAVIFTTPSPEDLAFYLREK 139 (226)
T ss_pred ------CCCCEEEEeCCchhhcccc--------hhhhc----c--chHHHHHHHHHhhCcEEEEecCCHHHHHHHHHhC
Confidence 0235889998643321100 00000 0 1123567788899999999999999998888763
No 265
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.64 E-value=1e-07 Score=90.92 Aligned_cols=151 Identities=21% Similarity=0.168 Sum_probs=93.2
Q ss_pred CCCcchhccHHHHHHHHHHHhcCCCCcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCC---------------
Q 017884 50 QSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASD--------------- 114 (364)
Q Consensus 50 ~~~~~~vg~~~~~~~l~~~~~~~~~~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~--------------- 114 (364)
..|.++.|+..++..+.-.+..+ .+++|.||+|+|||++++.+...+.... ....++...-.
T Consensus 188 ~d~~~v~Gq~~~~~al~laa~~G--~~llliG~~GsGKTtLak~L~gllpp~~-g~e~le~~~i~s~~g~~~~~~~~~~r 264 (506)
T PRK09862 188 HDLSDVIGQEQGKRGLEITAAGG--HNLLLIGPPGTGKTMLASRINGLLPDLS-NEEALESAAILSLVNAESVQKQWRQR 264 (506)
T ss_pred cCeEEEECcHHHHhhhheeccCC--cEEEEECCCCCcHHHHHHHHhccCCCCC-CcEEEecchhhhhhccccccCCcCCC
Confidence 47889999988888776555544 5699999999999999999987763221 11111211100
Q ss_pred -CCCh---HHHHHHHHHHHhcCccccCCccceEEEEEeCCCCCCHHHHHHHHHHHHHh-------------ccCccEEEE
Q 017884 115 -DRGI---DVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKY-------------TKNTRFALI 177 (364)
Q Consensus 115 -~~~~---~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~-------------~~~~~~Il~ 177 (364)
.... ......+..-.. .....-...+++++++||++.+....++.|++.|++. +.++.+|.+
T Consensus 265 Pfr~ph~~~s~~~l~GGg~~-~~pG~l~~A~gGvLfLDEi~e~~~~~~~~L~~~LE~g~v~I~r~g~~~~~pa~f~lIAa 343 (506)
T PRK09862 265 PFRSPHHSASLTAMVGGGAI-PGPGEISLAHNGVLFLDELPEFERRTLDALREPIESGQIHLSRTRAKITYPARFQLVAA 343 (506)
T ss_pred CccCCCccchHHHHhCCCce-ehhhHhhhccCCEEecCCchhCCHHHHHHHHHHHHcCcEEEecCCcceeccCCEEEEEe
Confidence 0000 000011110000 0000011235789999999999999999999999753 345667777
Q ss_pred eeccc---------------------cCchhhhccc-eEEEecCCChHH
Q 017884 178 CNQVN---------------------KIIPALQSRC-TRFRFAPLEPVH 204 (364)
Q Consensus 178 ~~~~~---------------------~l~~~l~sr~-~~i~~~~~~~~~ 204 (364)
+|... ++..++.+|+ ..+.+++++.++
T Consensus 344 ~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLDRfdL~v~v~~~~~~~ 392 (506)
T PRK09862 344 MNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPPGI 392 (506)
T ss_pred ecCccceecCCCCCCcCHHHHHHHHhhCCHhHHhhccEEEEeCCCCHHH
Confidence 76432 4667888998 557888877663
No 266
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.64 E-value=6.9e-08 Score=76.06 Aligned_cols=104 Identities=27% Similarity=0.380 Sum_probs=62.2
Q ss_pred CcEEEeCCCCccHHHHHHHHHHHHcCCC---CCCcEEEEeCCCCCChHHHHHHHHHHHhcCccccCC-------------
Q 017884 75 PHLLLYGPPGTGKTSTILAVARKLYGAQ---YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGV------------- 138 (364)
Q Consensus 75 ~~lll~G~~G~GKt~la~~l~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~------------- 138 (364)
.+++++||+|+|||++++.+++.+.... ....++.++.........+...+.............
T Consensus 5 ~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l~ 84 (131)
T PF13401_consen 5 RILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDALD 84 (131)
T ss_dssp --EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHHH
T ss_pred cccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHHH
Confidence 3489999999999999999999874210 034555655544333333333333322222110000
Q ss_pred ccceEEEEEeCCCCC-CHHHHHHHHHHHHHhccCccEEEEeec
Q 017884 139 KASVKLVLLDEADAM-TKDAQFALRRVIEKYTKNTRFALICNQ 180 (364)
Q Consensus 139 ~~~~~viiiDe~~~l-~~~~~~~L~~~le~~~~~~~~Il~~~~ 180 (364)
.....+|+|||+|.+ .....+.|..+++ ..++.+|+++..
T Consensus 85 ~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 85 RRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred hcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 012459999999999 8777777777666 556778888754
No 267
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.63 E-value=1.3e-07 Score=82.96 Aligned_cols=119 Identities=19% Similarity=0.313 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHhc-CCCCcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCCCChHHHHHHHHHHHhcCccccC
Q 017884 59 RDIVDTIDRLTSE-NRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFG 137 (364)
Q Consensus 59 ~~~~~~l~~~~~~-~~~~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 137 (364)
...+..+...... .+..+++|+||||+|||++|.++++++...+. .+..++.++ ....+............+ ..
T Consensus 89 ~~~l~~~~~~~~~~~~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~--sv~f~~~~e--l~~~Lk~~~~~~~~~~~l-~~ 163 (254)
T COG1484 89 KKALEDLASLVEFFERGENLVLLGPPGVGKTHLAIAIGNELLKAGI--SVLFITAPD--LLSKLKAAFDEGRLEEKL-LR 163 (254)
T ss_pred HHHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHHHcCC--eEEEEEHHH--HHHHHHHHHhcCchHHHH-HH
Confidence 3444444433321 24456999999999999999999999974344 344443322 111221111110000000 00
Q ss_pred CccceEEEEEeCCCCCC--HHHHHHHHHHHHHhccCccEEEEeeccc
Q 017884 138 VKASVKLVLLDEADAMT--KDAQFALRRVIEKYTKNTRFALICNQVN 182 (364)
Q Consensus 138 ~~~~~~viiiDe~~~l~--~~~~~~L~~~le~~~~~~~~Il~~~~~~ 182 (364)
......|+||||+...+ ....+.++.++......-..++++|.+.
T Consensus 164 ~l~~~dlLIiDDlG~~~~~~~~~~~~~q~I~~r~~~~~~~~tsN~~~ 210 (254)
T COG1484 164 ELKKVDLLIIDDIGYEPFSQEEADLLFQLISRRYESRSLIITSNLSF 210 (254)
T ss_pred HhhcCCEEEEecccCccCCHHHHHHHHHHHHHHHhhccceeecCCCh
Confidence 01147799999998864 4456777777776655555588887543
No 268
>PF12169 DNA_pol3_gamma3: DNA polymerase III subunits gamma and tau domain III; InterPro: IPR022754 This domain is found in bacteria and eukaryotes, and is approximately 110 amino acids in length. It is found in association with PF00004 from PFAM. This domain is also present in the tau subunit before it undergoes cleavage. Domains I-III are shared between the tau and the gamma subunits, while most of the DnaB-binding Domain IV and all of the alpha-interacting Domain V are unique to tau. ; GO: 0003887 DNA-directed DNA polymerase activity; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G.
Probab=98.62 E-value=7.3e-07 Score=71.43 Aligned_cols=102 Identities=18% Similarity=0.245 Sum_probs=90.6
Q ss_pred CchHHHHHhcCCCChHHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc------------------
Q 017884 253 ITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKI------------------ 314 (364)
Q Consensus 253 i~~~~v~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~~~~------------------ 314 (364)
||.++|.+++|......++++++++.++|..+++..++++. ..|.++..++..+..++|++
T Consensus 1 It~e~V~~~lG~v~~~~i~~l~~ai~~~d~~~~l~~~~~l~-~~G~d~~~~l~~L~~~~R~ll~~k~~~~~~~~~~~~~~ 79 (143)
T PF12169_consen 1 ITAEDVREILGLVDEEQIFELLDAILEGDAAEALELLNELL-EQGKDPKQFLDDLIEYLRDLLLYKITGDKSNLLELSEE 79 (143)
T ss_dssp B-HHHHHHHHTHTSTHHHHHHHHHHHTT-HHHHHHHHHHHH-HCT--HHHHHHHHHHHHHHHHHHTTSGGGS-SG--CTT
T ss_pred CCHHHHHHHHCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCCCHHHHHHHHHHHHHHHHHHHhCCchhhcccCCHH
Confidence 68899999999999999999999999999999999999999 99999999999999999976
Q ss_pred ----------CCChHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHH
Q 017884 315 ----------KMPSDVRVRLMNDLADIEYRLSFGCNDKLQLGSIISTFTQA 355 (364)
Q Consensus 315 ----------~~~~~~~~~i~~~l~~~~~~l~~~~~~~~~l~~l~~~l~~~ 355 (364)
.++.+.+..+++.+.+.+..++.+.++++.+|-.+.++|..
T Consensus 80 ~~~~~~~~a~~~~~~~l~~~~~~l~~~~~~lr~s~~pr~~lE~~llrl~~~ 130 (143)
T PF12169_consen 80 EEEKLKELAKKFSPERLQRILQILLEAENELRYSSNPRILLEMALLRLCQL 130 (143)
T ss_dssp THHHHHHHHHHS-HHHHHHHHHHHHHHHHHTTTSSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHH
Confidence 45666788999999999999999999999999999999974
No 269
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=98.60 E-value=1.4e-06 Score=75.11 Aligned_cols=136 Identities=21% Similarity=0.290 Sum_probs=86.2
Q ss_pred HHHHHHhcCCCCcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCCCChHHHHHHHHHHHhcCccccCCccceE
Q 017884 64 TIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVK 143 (364)
Q Consensus 64 ~l~~~~~~~~~~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 143 (364)
.+...+... -.-.++||+|+|||++++.+++.+ +..++.+|+++......+...+...+.. +.
T Consensus 24 ~l~~al~~~--~~~~~~GpagtGKtetik~La~~l-----G~~~~vfnc~~~~~~~~l~ril~G~~~~----------Ga 86 (231)
T PF12774_consen 24 TLTQALSLN--LGGALSGPAGTGKTETIKDLARAL-----GRFVVVFNCSEQMDYQSLSRILKGLAQS----------GA 86 (231)
T ss_dssp HHHHHHCTT--TEEEEESSTTSSHHHHHHHHHHCT-----T--EEEEETTSSS-HHHHHHHHHHHHHH----------T-
T ss_pred HHHHHhccC--CCCCCcCCCCCCchhHHHHHHHHh-----CCeEEEecccccccHHHHHHHHHHHhhc----------Cc
Confidence 444444333 224789999999999999999997 5677888999887777777777777653 56
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHHHh--------------------ccCccEEEEeec----cccCchhhhccceEEEecC
Q 017884 144 LVLLDEADAMTKDAQFALRRVIEKY--------------------TKNTRFALICNQ----VNKIIPALQSRCTRFRFAP 199 (364)
Q Consensus 144 viiiDe~~~l~~~~~~~L~~~le~~--------------------~~~~~~Il~~~~----~~~l~~~l~sr~~~i~~~~ 199 (364)
.+.+||++++..+....+...+... .+++.+.++.|. ...+++.+++-++.+.+..
T Consensus 87 W~cfdefnrl~~~vLS~i~~~i~~i~~al~~~~~~~~~~g~~i~l~~~~~iFiT~np~y~gr~~LP~nLk~lFRpvam~~ 166 (231)
T PF12774_consen 87 WLCFDEFNRLSEEVLSVISQQIQSIQDALRAKQKSFTLEGQEIKLNPNCGIFITMNPGYAGRSELPENLKALFRPVAMMV 166 (231)
T ss_dssp EEEEETCCCSSHHHHHHHHHHHHHHHHHHHCTSSEEEETTCEEE--TT-EEEEEE-B-CCCC--S-HHHCTTEEEEE--S
T ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHHHhhcccccccccCCCEEEEccceeEEEeeccccCCcccCCHhHHHHhheeEEeC
Confidence 9999999999987765554444321 123333344442 2478888988899999999
Q ss_pred CChHHHHHHHHHHHHHcCCC
Q 017884 200 LEPVHVTERLKHVIEAEGLD 219 (364)
Q Consensus 200 ~~~~~~~~~l~~~~~~~~~~ 219 (364)
|+...+.+++ +-..|..
T Consensus 167 PD~~~I~ei~---L~s~GF~ 183 (231)
T PF12774_consen 167 PDLSLIAEIL---LLSQGFK 183 (231)
T ss_dssp --HHHHHHHH---HHCCCTS
T ss_pred CCHHHHHHHH---HHHcCch
Confidence 9877765554 3344543
No 270
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.58 E-value=1.6e-07 Score=84.56 Aligned_cols=123 Identities=18% Similarity=0.216 Sum_probs=70.4
Q ss_pred CCCCCcchhc----cHHHHHHHHHHHhcC----CCCcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCCCChH
Q 017884 48 RPQSLADVAA----HRDIVDTIDRLTSEN----RLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGID 119 (364)
Q Consensus 48 ~p~~~~~~vg----~~~~~~~l~~~~~~~----~~~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 119 (364)
...+|+++.. +..+......++... ...+++|+||+|+|||+++.++++++...+....++.+ +. -..
T Consensus 122 ~~atf~~~~~~~~~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~--~~--l~~ 197 (306)
T PRK08939 122 LQASLADIDLDDRDRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHF--PE--FIR 197 (306)
T ss_pred hcCcHHHhcCCChHHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEH--HH--HHH
Confidence 3456776664 233344445555532 23459999999999999999999999765555444433 11 011
Q ss_pred HHHHHH-----HHHHhcCccccCCccceEEEEEeCCCCC--CHHHHHHHH-HHHHHh-ccCccEEEEeecc
Q 017884 120 VVRQQI-----QDFASTQSFSFGVKASVKLVLLDEADAM--TKDAQFALR-RVIEKY-TKNTRFALICNQV 181 (364)
Q Consensus 120 ~~~~~i-----~~~~~~~~~~~~~~~~~~viiiDe~~~l--~~~~~~~L~-~~le~~-~~~~~~Il~~~~~ 181 (364)
.+...+ ...... + ....+++|||+..- ++-....++ .+++.. ......|++||..
T Consensus 198 ~lk~~~~~~~~~~~l~~----l---~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl~ 261 (306)
T PRK08939 198 ELKNSISDGSVKEKIDA----V---KEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNFD 261 (306)
T ss_pred HHHHHHhcCcHHHHHHH----h---cCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCCC
Confidence 111111 111111 1 14679999998655 444443444 455643 4566788888754
No 271
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=98.58 E-value=3.1e-06 Score=81.03 Aligned_cols=142 Identities=18% Similarity=0.215 Sum_probs=84.8
Q ss_pred hhccHHHHHHHHHHHhcCC---------C---CcEEEeCCCCccHHHHHHHHHHHHcCC----CCCCcEEEEeCCCCCCh
Q 017884 55 VAAHRDIVDTIDRLTSENR---------L---PHLLLYGPPGTGKTSTILAVARKLYGA----QYHNMILELNASDDRGI 118 (364)
Q Consensus 55 ~vg~~~~~~~l~~~~~~~~---------~---~~lll~G~~G~GKt~la~~l~~~l~~~----~~~~~~~~~~~~~~~~~ 118 (364)
+.|++++++-|.-.+-+|. . -|+||+|.||+|||.+.+.+++.+... +.+...+-+.+.-....
T Consensus 431 Iye~edvKkglLLqLfGGt~k~~~~~~~~R~~INILL~GDPGtsKSqlLqyv~~l~pRg~yTSGkGsSavGLTayVtrd~ 510 (804)
T KOG0478|consen 431 IYELEDVKKGLLLQLFGGTRKEDEKSGRFRGDINILLVGDPGTSKSQLLQYCHRLLPRGVYTSGKGSSAVGLTAYVTKDP 510 (804)
T ss_pred hhcccchhhhHHHHHhcCCcccccccccccccceEEEecCCCcCHHHHHHHHHHhCCcceeecCCccchhcceeeEEecC
Confidence 6667777776554443331 1 248999999999999999999876321 10000000000000000
Q ss_pred HHHHHHHHHHHhcCccccCCccceEEEEEeCCCCCCHHHHHHHHHHHHHh-------------ccCccEEEEeeccc---
Q 017884 119 DVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKY-------------TKNTRFALICNQVN--- 182 (364)
Q Consensus 119 ~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~-------------~~~~~~Il~~~~~~--- 182 (364)
.-++.+- ++--.-.+ +.++..|||+|+|+...+..|.+.||.. +..+.++.++|+..
T Consensus 511 -dtkqlVL---esGALVLS---D~GiCCIDEFDKM~dStrSvLhEvMEQQTvSIAKAGII~sLNAR~SVLAaANP~~sky 583 (804)
T KOG0478|consen 511 -DTRQLVL---ESGALVLS---DNGICCIDEFDKMSDSTRSVLHEVMEQQTLSIAKAGIIASLNARCSVLAAANPIRSKY 583 (804)
T ss_pred -ccceeee---ecCcEEEc---CCceEEchhhhhhhHHHHHHHHHHHHHhhhhHhhcceeeeccccceeeeeeccccccC
Confidence 0011110 00001012 5789999999999999999999999963 35667777776322
Q ss_pred ----------cCchhhhccceE--EEecCCChH
Q 017884 183 ----------KIIPALQSRCTR--FRFAPLEPV 203 (364)
Q Consensus 183 ----------~l~~~l~sr~~~--i~~~~~~~~ 203 (364)
.++++|.|||.. +-+.++++.
T Consensus 584 np~k~i~eNI~LpptLLSRFDLIylllD~~DE~ 616 (804)
T KOG0478|consen 584 NPNKSIIENINLPPTLLSRFDLIFLLLDKPDER 616 (804)
T ss_pred CCCCchhhccCCChhhhhhhcEEEEEecCcchh
Confidence 478899999955 445666654
No 272
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=98.58 E-value=5.8e-07 Score=87.85 Aligned_cols=134 Identities=22% Similarity=0.267 Sum_probs=83.5
Q ss_pred chhccHHHHHHHHHHHhcCC------------CCcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeC--CCCCChH
Q 017884 54 DVAAHRDIVDTIDRLTSENR------------LPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNA--SDDRGID 119 (364)
Q Consensus 54 ~~vg~~~~~~~l~~~~~~~~------------~~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~--~~~~~~~ 119 (364)
.+.|++.+++.+.-++-+|. --|+||.|.||+|||.+.+.+.+... ..++.++ +...|..
T Consensus 287 sIyG~e~VKkAilLqLfgGv~k~~~~g~~iRGDInILLvGDPgtaKSqlLk~v~~~aP------r~vytsgkgss~~GLT 360 (682)
T COG1241 287 SIYGHEDVKKAILLQLFGGVKKNLPDGTRIRGDIHILLVGDPGTAKSQLLKYVAKLAP------RGVYTSGKGSSAAGLT 360 (682)
T ss_pred cccCcHHHHHHHHHHhcCCCcccCCCCcccccceeEEEcCCCchhHHHHHHHHHhhCC------ceEEEccccccccCce
Confidence 47788888887666554331 12599999999999999999998752 1122222 1111111
Q ss_pred --HHHHHH-HHH-HhcCccccCCccceEEEEEeCCCCCCHHHHHHHHHHHHHh-------------ccCccEEEEeeccc
Q 017884 120 --VVRQQI-QDF-ASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKY-------------TKNTRFALICNQVN 182 (364)
Q Consensus 120 --~~~~~i-~~~-~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~-------------~~~~~~Il~~~~~~ 182 (364)
..++.. .++ .+.--+-+ ++++|+.|||+|.|......++...||.. +..|.++.++|+..
T Consensus 361 Aav~rd~~tge~~LeaGALVl---AD~Gv~cIDEfdKm~~~dr~aihEaMEQQtIsIaKAGI~atLnARcsvLAAaNP~~ 437 (682)
T COG1241 361 AAVVRDKVTGEWVLEAGALVL---ADGGVCCIDEFDKMNEEDRVAIHEAMEQQTISIAKAGITATLNARCSVLAAANPKF 437 (682)
T ss_pred eEEEEccCCCeEEEeCCEEEE---ecCCEEEEEeccCCChHHHHHHHHHHHhcEeeecccceeeecchhhhhhhhhCCCC
Confidence 111111 000 01000001 25889999999999999999999999974 24455566666443
Q ss_pred -------------cCchhhhccceEEE
Q 017884 183 -------------KIIPALQSRCTRFR 196 (364)
Q Consensus 183 -------------~l~~~l~sr~~~i~ 196 (364)
.++++|.|||..+.
T Consensus 438 Gryd~~~~~~enI~l~~~lLSRFDLif 464 (682)
T COG1241 438 GRYDPKKTVAENINLPAPLLSRFDLIF 464 (682)
T ss_pred CcCCCCCCHHHhcCCChhHHhhCCeeE
Confidence 57789999985543
No 273
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.56 E-value=5.7e-07 Score=89.99 Aligned_cols=118 Identities=23% Similarity=0.367 Sum_probs=83.4
Q ss_pred cchhccHHHHHHHHHHHhcC-----CC-C--cEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCC------C---
Q 017884 53 ADVAAHRDIVDTIDRLTSEN-----RL-P--HLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASD------D--- 115 (364)
Q Consensus 53 ~~~vg~~~~~~~l~~~~~~~-----~~-~--~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~------~--- 115 (364)
+.++||++++..+-..+... +. | .++|.||+|+|||.+|++++..+++.. ..++.++.+. .
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgse--~~~IriDmse~~evskligs 639 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGSE--ENFIRLDMSEFQEVSKLIGS 639 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCCc--cceEEechhhhhhhhhccCC
Confidence 45789999999888877532 11 2 289999999999999999999997554 3444554432 0
Q ss_pred ----CChHHHHHHHHHHHhcCccccCCccceEEEEEeCCCCCCHHHHHHHHHHHHHhc-----------cCccEEEEeec
Q 017884 116 ----RGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYT-----------KNTRFALICNQ 180 (364)
Q Consensus 116 ----~~~~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~-----------~~~~~Il~~~~ 180 (364)
.+.+ ....+.+..... .+.||++||++.-....++.|+.++++.. .++.||+++|.
T Consensus 640 p~gyvG~e-~gg~Lteavrrr--------P~sVVLfdeIEkAh~~v~n~llq~lD~GrltDs~Gr~Vd~kN~I~IMTsn~ 710 (898)
T KOG1051|consen 640 PPGYVGKE-EGGQLTEAVKRR--------PYSVVLFEEIEKAHPDVLNILLQLLDRGRLTDSHGREVDFKNAIFIMTSNV 710 (898)
T ss_pred Ccccccch-hHHHHHHHHhcC--------CceEEEEechhhcCHHHHHHHHHHHhcCccccCCCcEeeccceEEEEeccc
Confidence 1111 122333333332 47899999999999999999999999752 56788888764
Q ss_pred c
Q 017884 181 V 181 (364)
Q Consensus 181 ~ 181 (364)
-
T Consensus 711 ~ 711 (898)
T KOG1051|consen 711 G 711 (898)
T ss_pred c
Confidence 3
No 274
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=98.54 E-value=1e-06 Score=83.65 Aligned_cols=133 Identities=22% Similarity=0.260 Sum_probs=80.8
Q ss_pred CcchhccHHHHHHHHHHHhcC------------CCCcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeC--CCCCC
Q 017884 52 LADVAAHRDIVDTIDRLTSEN------------RLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNA--SDDRG 117 (364)
Q Consensus 52 ~~~~vg~~~~~~~l~~~~~~~------------~~~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~--~~~~~ 117 (364)
|-.+.||+.++.-+.-.+-+| .-.|+++.|.||+||+.+.++.+.-.. ..++.++ +...|
T Consensus 344 ~PsIyGhe~VK~GilL~LfGGv~K~a~eg~~lRGDinv~iVGDPgt~KSQfLk~v~~fsP------R~vYtsGkaSSaAG 417 (764)
T KOG0480|consen 344 FPSIYGHELVKAGILLSLFGGVHKSAGEGTSLRGDINVCIVGDPGTGKSQFLKAVCAFSP------RSVYTSGKASSAAG 417 (764)
T ss_pred CccccchHHHHhhHHHHHhCCccccCCCCccccCCceEEEeCCCCccHHHHHHHHhccCC------cceEecCccccccc
Confidence 344778888887665555433 123699999999999999999887642 2222222 11111
Q ss_pred hH--HHHHHH-HHH-HhcCccccCCccceEEEEEeCCCCCCHHHHHHHHHHHHHh-------------ccCccEEEEeec
Q 017884 118 ID--VVRQQI-QDF-ASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKY-------------TKNTRFALICNQ 180 (364)
Q Consensus 118 ~~--~~~~~i-~~~-~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~-------------~~~~~~Il~~~~ 180 (364)
.. .+++.- .+| .+.--.-. ++.+|..|||+|+|....+.++.+.||.. +..+.++.++|+
T Consensus 418 LTaaVvkD~esgdf~iEAGALmL---ADnGICCIDEFDKMd~~dqvAihEAMEQQtISIaKAGv~aTLnARtSIlAAANP 494 (764)
T KOG0480|consen 418 LTAAVVKDEESGDFTIEAGALML---ADNGICCIDEFDKMDVKDQVAIHEAMEQQTISIAKAGVVATLNARTSILAAANP 494 (764)
T ss_pred ceEEEEecCCCCceeeecCcEEE---ccCceEEechhcccChHhHHHHHHHHHhheehheecceEEeecchhhhhhhcCC
Confidence 10 111100 000 00000001 25789999999999998999999999974 344556666654
Q ss_pred cc-------------cCchhhhccce
Q 017884 181 VN-------------KIIPALQSRCT 193 (364)
Q Consensus 181 ~~-------------~l~~~l~sr~~ 193 (364)
.. ++.++|.|||.
T Consensus 495 v~GhYdR~ktl~eNi~msApimSRFD 520 (764)
T KOG0480|consen 495 VGGHYDRKKTLRENINMSAPIMSRFD 520 (764)
T ss_pred cCCccccccchhhhcCCCchhhhhhc
Confidence 32 56788999974
No 275
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.54 E-value=3.4e-07 Score=81.21 Aligned_cols=148 Identities=20% Similarity=0.285 Sum_probs=83.8
Q ss_pred HHHHHHhcCCCCcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCCCChHHHHHHHHHHHhcCcc-ccCC-ccc
Q 017884 64 TIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSF-SFGV-KAS 141 (364)
Q Consensus 64 ~l~~~~~~~~~~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~-~~~ 141 (364)
-+..++..+ .+++|+||+|+|||.+++.+.+.+... ...+..++.+.......+...++.......- .+++ .++
T Consensus 25 ll~~l~~~~--~pvLl~G~~GtGKT~li~~~l~~l~~~--~~~~~~~~~s~~Tts~~~q~~ie~~l~k~~~~~~gP~~~k 100 (272)
T PF12775_consen 25 LLDLLLSNG--RPVLLVGPSGTGKTSLIQNFLSSLDSD--KYLVITINFSAQTTSNQLQKIIESKLEKRRGRVYGPPGGK 100 (272)
T ss_dssp HHHHHHHCT--EEEEEESSTTSSHHHHHHHHHHCSTTC--CEEEEEEES-TTHHHHHHHHCCCTTECECTTEEEEEESSS
T ss_pred HHHHHHHcC--CcEEEECCCCCchhHHHHhhhccCCcc--ccceeEeeccCCCCHHHHHHHHhhcEEcCCCCCCCCCCCc
Confidence 344455554 469999999999999999988775332 2223344444332223333333222211110 0111 224
Q ss_pred eEEEEEeCCCCCCHH------HHHHHHHHHHHh------------ccCccEEEEeecc---ccCchhhhccceEEEecCC
Q 017884 142 VKLVLLDEADAMTKD------AQFALRRVIEKY------------TKNTRFALICNQV---NKIIPALQSRCTRFRFAPL 200 (364)
Q Consensus 142 ~~viiiDe~~~l~~~------~~~~L~~~le~~------------~~~~~~Il~~~~~---~~l~~~l~sr~~~i~~~~~ 200 (364)
+.|++|||+..-..+ ..+.|+.+++.. -.++.+|.+++.. ..+.+.+.+.+.++.++.|
T Consensus 101 ~lv~fiDDlN~p~~d~ygtq~~iElLRQ~i~~~g~yd~~~~~~~~i~~i~~vaa~~p~~Gr~~is~R~~r~f~i~~~~~p 180 (272)
T PF12775_consen 101 KLVLFIDDLNMPQPDKYGTQPPIELLRQLIDYGGFYDRKKLEWKSIEDIQFVAAMNPTGGRNPISPRFLRHFNILNIPYP 180 (272)
T ss_dssp EEEEEEETTT-S---TTS--HHHHHHHHHHHCSEEECTTTTEEEEECSEEEEEEESSTTT--SHHHHHHTTEEEEE----
T ss_pred EEEEEecccCCCCCCCCCCcCHHHHHHHHHHhcCcccCCCcEEEEEeeeEEEEecCCCCCCCCCChHHhhheEEEEecCC
Confidence 669999999777532 356677777642 1345556555532 2467788888999999999
Q ss_pred ChHHHHHHHHHHHHH
Q 017884 201 EPVHVTERLKHVIEA 215 (364)
Q Consensus 201 ~~~~~~~~l~~~~~~ 215 (364)
+.+.+..+...++..
T Consensus 181 ~~~sl~~If~~il~~ 195 (272)
T PF12775_consen 181 SDESLNTIFSSILQS 195 (272)
T ss_dssp TCCHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHhh
Confidence 999999988877653
No 276
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.52 E-value=4.5e-06 Score=88.96 Aligned_cols=187 Identities=12% Similarity=0.107 Sum_probs=104.1
Q ss_pred CCCcchhccHHHHHHHHHHHhcCC--CCcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEE---eCCC---------C
Q 017884 50 QSLADVAAHRDIVDTIDRLTSENR--LPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILEL---NASD---------D 115 (364)
Q Consensus 50 ~~~~~~vg~~~~~~~l~~~~~~~~--~~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~---~~~~---------~ 115 (364)
..+++++|.+..++.+..++.... ...+.|+|++|+||||+|++++..+........++.. .... .
T Consensus 181 ~~~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~~v~~~~~~~~~~~~~~ 260 (1153)
T PLN03210 181 NDFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFISKSMEIYSSANPDD 260 (1153)
T ss_pred cccccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeeccccccchhhcccccccc
Confidence 467899999999999988875432 2227999999999999999999887443211111110 0000 0
Q ss_pred CC--hHHHHHHHHHHHhcCccccC--------CccceEEEEEeCCCCCCHHHHHHHHHHHHHhccCccEEEEeeccccCc
Q 017884 116 RG--IDVVRQQIQDFASTQSFSFG--------VKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKII 185 (364)
Q Consensus 116 ~~--~~~~~~~i~~~~~~~~~~~~--------~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~l~ 185 (364)
.. .......+............ -...+-+|++||++.. ...+.|....+......++|++|....-+.
T Consensus 261 ~~~~~~l~~~~l~~il~~~~~~~~~~~~~~~~L~~krvLLVLDdv~~~--~~l~~L~~~~~~~~~GsrIIiTTrd~~vl~ 338 (1153)
T PLN03210 261 YNMKLHLQRAFLSEILDKKDIKIYHLGAMEERLKHRKVLIFIDDLDDQ--DVLDALAGQTQWFGSGSRIIVITKDKHFLR 338 (1153)
T ss_pred cchhHHHHHHHHHHHhCCCCcccCCHHHHHHHHhCCeEEEEEeCCCCH--HHHHHHHhhCccCCCCcEEEEEeCcHHHHH
Confidence 00 00011112221111100000 0114669999998653 344555443333344667888876543221
Q ss_pred hhhhccceEEEecCCChHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCCHHHHH
Q 017884 186 PALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVT--EGGLAALVRLCNGDMRKAL 240 (364)
Q Consensus 186 ~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~--~~~~~~l~~~~~g~~r~a~ 240 (364)
.. .-..++..+.++.++..+++...+-+....-+ .+....++++++|-|-.+.
T Consensus 339 ~~--~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLAl~ 393 (1153)
T PLN03210 339 AH--GIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLN 393 (1153)
T ss_pred hc--CCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHHHH
Confidence 10 01257888899999888888877654322111 2345668888888664433
No 277
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.50 E-value=2.4e-07 Score=77.57 Aligned_cols=48 Identities=25% Similarity=0.392 Sum_probs=33.4
Q ss_pred chhccHHHHHHHHHHHh---cCCCCcEEEeCCCCccHHHHHHHHHHHHcCC
Q 017884 54 DVAAHRDIVDTIDRLTS---ENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101 (364)
Q Consensus 54 ~~vg~~~~~~~l~~~~~---~~~~~~lll~G~~G~GKt~la~~l~~~l~~~ 101 (364)
+++|+++.++.+...+. .+..+.++|+|++|+|||++++++...+...
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 37999999999999983 2233448999999999999999998887544
No 278
>KOG0477 consensus DNA replication licensing factor, MCM2 component [Replication, recombination and repair]
Probab=98.48 E-value=5.3e-06 Score=78.62 Aligned_cols=228 Identities=15% Similarity=0.173 Sum_probs=122.0
Q ss_pred hhccHHHHHHHHHHHhcCCC------------CcEEEeCCCCccHHHHHHHHHHHHc----CCCCCCcEEEEeCCCCCCh
Q 017884 55 VAAHRDIVDTIDRLTSENRL------------PHLLLYGPPGTGKTSTILAVARKLY----GAQYHNMILELNASDDRGI 118 (364)
Q Consensus 55 ~vg~~~~~~~l~~~~~~~~~------------~~lll~G~~G~GKt~la~~l~~~l~----~~~~~~~~~~~~~~~~~~~ 118 (364)
+.|+..++..+.-.+-+|.. -|+||+|.||+||+.+.+..++.-. ..+.+...+-+++.... .
T Consensus 451 IyGh~~VK~AvAlaLfGGv~kn~~~khkvRGDinvLL~GDPGTaKSQFLKY~eK~s~RAV~tTGqGASavGLTa~v~K-d 529 (854)
T KOG0477|consen 451 IYGHEDVKRAVALALFGGVPKNPGGKHKVRGDINVLLLGDPGTAKSQFLKYAEKTSPRAVFTTGQGASAVGLTAYVRK-D 529 (854)
T ss_pred hhchHHHHHHHHHHHhcCCccCCCCCceeccceeEEEecCCCccHHHHHHHHHhcCcceeEeccCCccccceeEEEee-C
Confidence 66788887777666654421 1489999999999999999987631 11111111111111100 0
Q ss_pred HHHHHHHHHHHhcCccccCCccceEEEEEeCCCCCCHHHHHHHHHHHHHh-------------ccCccEEEEeeccc---
Q 017884 119 DVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKY-------------TKNTRFALICNQVN--- 182 (364)
Q Consensus 119 ~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~-------------~~~~~~Il~~~~~~--- 182 (364)
...+++ ..+.-..-++ +++|.+|||+|.|.......+-+.||.. ...|.+|.++|+..
T Consensus 530 PvtrEW---TLEaGALVLA---DkGvClIDEFDKMndqDRtSIHEAMEQQSISISKAGIVtsLqArctvIAAanPigGRY 603 (854)
T KOG0477|consen 530 PVTREW---TLEAGALVLA---DKGVCLIDEFDKMNDQDRTSIHEAMEQQSISISKAGIVTSLQARCTVIAAANPIGGRY 603 (854)
T ss_pred Ccccee---eeccCeEEEc---cCceEEeehhhhhcccccchHHHHHHhcchhhhhhhHHHHHHhhhhhheecCCCCCcc
Confidence 001111 0010001122 5889999999999987777777777653 34677888886521
Q ss_pred ----------cCchhhhccceEEEe-----cCCChHHHHHHH-HHHHHHcC-------C----------CCCHHHHHHHH
Q 017884 183 ----------KIIPALQSRCTRFRF-----APLEPVHVTERL-KHVIEAEG-------L----------DVTEGGLAALV 229 (364)
Q Consensus 183 ----------~l~~~l~sr~~~i~~-----~~~~~~~~~~~l-~~~~~~~~-------~----------~i~~~~~~~l~ 229 (364)
.+..++.||+.++.. .|..++.+.+++ ....+... . .++.+.+..-+
T Consensus 604 ~~s~tFaqNV~ltePIlSRFDiLcVvkD~vd~~~De~lA~fVV~Sh~r~hp~~~~~~~~~e~~~~~~v~~ipq~lLrkyI 683 (854)
T KOG0477|consen 604 NPSLTFAQNVDLTEPILSRFDILCVVKDTVDPVQDEKLAKFVVGSHVRHHPSNKEEDGLEEPQMPARVEPIPQELLRKYI 683 (854)
T ss_pred CCccchhhccccccchhhhcceeeeeecccCchhHHHHHHHHHHhHhhcCCcccccCcccccccccccccChHHHHHHHH
Confidence 577899999765443 334444444443 33332211 1 14555554444
Q ss_pred HHcC---------CCHHHHHH---HHHHHHHhc--ccCchHHHHHhcCCCChHHHHHHHHHHHhccHHHHHHHH
Q 017884 230 RLCN---------GDMRKALN---ILQSTHMAS--QQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRI 289 (364)
Q Consensus 230 ~~~~---------g~~r~a~~---~l~~~~~~~--~~i~~~~v~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~l 289 (364)
.++. +|..+.-+ .|.+..... -+||..+++.++.-.....--.+-+.+...+...|+..+
T Consensus 684 ~yar~~v~PkL~q~d~~K~s~vya~lRkES~~tGs~piTvRHieS~ir~seAhArm~Lr~~V~~~d~~~AI~v~ 757 (854)
T KOG0477|consen 684 IYAREKVRPKLNQMDMDKISSVYADLRKESMATGSLPITVRHIESMIRMSEAHARMHLREYVTEEDVDMAIRVM 757 (854)
T ss_pred HHHHHhcccccccccHHHHHHHHHHHHhhccccCCchhhHHHHHHHHHHHHHHHHHHHHhhccHhHHHHHHHHH
Confidence 4332 33333322 222222222 278888888776544333333445556666666666643
No 279
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=98.46 E-value=1.8e-05 Score=71.24 Aligned_cols=200 Identities=18% Similarity=0.209 Sum_probs=109.8
Q ss_pred cchhccHHHHHHHHHHHhcCC--CCc-EEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEE--------------EeCCCC
Q 017884 53 ADVAAHRDIVDTIDRLTSENR--LPH-LLLYGPPGTGKTSTILAVARKLYGAQYHNMILE--------------LNASDD 115 (364)
Q Consensus 53 ~~~vg~~~~~~~l~~~~~~~~--~~~-lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~--------------~~~~~~ 115 (364)
..+.+++..+..|...+.... .|. +.+||.+|+|||.+++.+.+..+.++.-.+.++ .+..+.
T Consensus 6 ~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~~~vw~n~~ecft~~~lle~IL~~~~~~d~ 85 (438)
T KOG2543|consen 6 PNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLNLENVWLNCVECFTYAILLEKILNKSQLADK 85 (438)
T ss_pred cCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcCCcceeeehHHhccHHHHHHHHHHHhccCCC
Confidence 357788999999999887653 454 699999999999999999998743321111111 000111
Q ss_pred CC--h----HHHHHHHHHHHhcCccccCCccceEEEEEeCCCCCCHHH---HHHHHHHHHHhcc-CccEEEEeeccccCc
Q 017884 116 RG--I----DVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDA---QFALRRVIEKYTK-NTRFALICNQVNKII 185 (364)
Q Consensus 116 ~~--~----~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~---~~~L~~~le~~~~-~~~~Il~~~~~~~l~ 185 (364)
.+ . +.+.+.+..+.+... .......-++++|++|.+.+-. ...|++.-+-.+. .++++++.....+..
T Consensus 86 dg~~~~~~~en~~d~i~~l~q~~~--~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i~iils~~~~e~~y 163 (438)
T KOG2543|consen 86 DGDKVEGDAENFSDFIYLLVQWPA--ATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTIVIILSAPSCEKQY 163 (438)
T ss_pred chhhhhhHHHHHHHHHHHHHhhHH--hhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCceEEEEeccccHHHh
Confidence 11 0 112222222222110 1111236689999999997432 3334443333222 455666654443332
Q ss_pred hhhhcc--ceEEEecCCChHHHHHHHHHHHHHcCCCCCHH----H----HHHHHHHcCCCHHHHHHHHHHHHH-hcccCc
Q 017884 186 PALQSR--CTRFRFAPLEPVHVTERLKHVIEAEGLDVTEG----G----LAALVRLCNGDMRKALNILQSTHM-ASQQIT 254 (364)
Q Consensus 186 ~~l~sr--~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~----~----~~~l~~~~~g~~r~a~~~l~~~~~-~~~~i~ 254 (364)
..=.+. ..+++|+.++.+++..++..--. | ....+ - ++-+...+. |+......+...+. +.++++
T Consensus 164 ~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~~p--~-~r~~~~ya~fl~v~l~vF~~~cr-d~~eL~~~~~~~wpky~epi~ 239 (438)
T KOG2543|consen 164 LINTGTLEIVVLHFPQYSVEETQVILSRDNP--G-KRKLDVYAQFLHVLLQVFYMACR-DVNELRSLISLAWPKYCEPIT 239 (438)
T ss_pred hcccCCCCceEEecCCCCHHHHHHHHhcCCc--c-ccchHHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHhhccccc
Confidence 210121 26799999999999988875321 0 22221 1 222333444 99999988876664 444444
Q ss_pred hHHH
Q 017884 255 EEAV 258 (364)
Q Consensus 255 ~~~v 258 (364)
.+.+
T Consensus 240 ~~~i 243 (438)
T KOG2543|consen 240 KGKI 243 (438)
T ss_pred cCCC
Confidence 4433
No 280
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=98.44 E-value=6e-05 Score=74.47 Aligned_cols=180 Identities=17% Similarity=0.194 Sum_probs=110.5
Q ss_pred cCCCCCcchhccHHHHHHHHHHHhcCCC-CcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCCCChHHHHHHH
Q 017884 47 YRPQSLADVAAHRDIVDTIDRLTSENRL-PHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQI 125 (364)
Q Consensus 47 ~~p~~~~~~vg~~~~~~~l~~~~~~~~~-~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i 125 (364)
.+|......+-++.+... +..+.. .-++|.-|.|+||||++-.++. ...++.....+.++.+++.....+...+
T Consensus 13 ~~P~~~~~~v~R~rL~~~----L~~~~~~RL~li~APAGfGKttl~aq~~~-~~~~~~~v~Wlslde~dndp~rF~~yLi 87 (894)
T COG2909 13 VRPVRPDNYVVRPRLLDR----LRRANDYRLILISAPAGFGKTTLLAQWRE-LAADGAAVAWLSLDESDNDPARFLSYLI 87 (894)
T ss_pred CCCCCcccccccHHHHHH----HhcCCCceEEEEeCCCCCcHHHHHHHHHH-hcCcccceeEeecCCccCCHHHHHHHHH
Confidence 445555666666655555 444422 2379999999999999999987 4444444444444444432221111111
Q ss_pred HHHHhcCcc--------------------------ccCCccceEEEEEeCCCCCCHHH-HHHHHHHHHHhccCccEEEEe
Q 017884 126 QDFASTQSF--------------------------SFGVKASVKLVLLDEADAMTKDA-QFALRRVIEKYTKNTRFALIC 178 (364)
Q Consensus 126 ~~~~~~~~~--------------------------~~~~~~~~~viiiDe~~~l~~~~-~~~L~~~le~~~~~~~~Il~~ 178 (364)
...-...|- ..+...++-.+||||.|.++... ...+..+++..|++..+|++|
T Consensus 88 ~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~S 167 (894)
T COG2909 88 AALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTS 167 (894)
T ss_pred HHHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEe
Confidence 111111110 01122357799999999998655 556777788889999999998
Q ss_pred ecccc-CchhhhccceEEEe----cCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Q 017884 179 NQVNK-IIPALQSRCTRFRF----APLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNG 234 (364)
Q Consensus 179 ~~~~~-l~~~l~sr~~~i~~----~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g 234 (364)
..... -...++=|...+++ -..+.+|..+++.... +..++...+..|...++|
T Consensus 168 R~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~---~l~Ld~~~~~~L~~~teG 225 (894)
T COG2909 168 RSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRG---SLPLDAADLKALYDRTEG 225 (894)
T ss_pred ccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcC---CCCCChHHHHHHHhhccc
Confidence 65433 33344444433332 2345677777776542 488999999999999988
No 281
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=98.43 E-value=6.6e-06 Score=79.95 Aligned_cols=167 Identities=19% Similarity=0.264 Sum_probs=103.8
Q ss_pred hhccHHHHHHHHHHHhcCC---------CCcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCCC--ChHHHHH
Q 017884 55 VAAHRDIVDTIDRLTSENR---------LPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDR--GIDVVRQ 123 (364)
Q Consensus 55 ~vg~~~~~~~l~~~~~~~~---------~~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~ 123 (364)
..+++..+..+.+.+.-.. .+.+|++|+||+|||++++++++++ +.+++++++.... ..+....
T Consensus 403 ~~~~~~~~~~l~~vl~p~~~~s~~~~~~~~~vLLhG~~g~GK~t~V~~vas~l-----g~h~~evdc~el~~~s~~~~et 477 (953)
T KOG0736|consen 403 PPGLEAKVLELVAVLSPQKQPSGALLTLNPSVLLHGPPGSGKTTVVRAVASEL-----GLHLLEVDCYELVAESASHTET 477 (953)
T ss_pred CccchHHHHHHHHHhCcccCcchhccccceEEEEeCCCCCChHHHHHHHHHHh-----CCceEeccHHHHhhcccchhHH
Confidence 3445555556666665322 2338999999999999999999998 5677777653311 1111122
Q ss_pred HHHHHHhcCccccCCccceEEEEEeCCCCCCH--------HHHHHHHHHHH--Hh---ccCccEEEEeeccccCchhhhc
Q 017884 124 QIQDFASTQSFSFGVKASVKLVLLDEADAMTK--------DAQFALRRVIE--KY---TKNTRFALICNQVNKIIPALQS 190 (364)
Q Consensus 124 ~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~~--------~~~~~L~~~le--~~---~~~~~~Il~~~~~~~l~~~l~s 190 (364)
.+..+..... ...+.||++.++|.+.- ..+..+...+. .+ ...+.+|.+++....+++.+++
T Consensus 478 kl~~~f~~a~-----~~~pavifl~~~dvl~id~dgged~rl~~~i~~~ls~e~~~~~~~~~ivv~t~~s~~~lp~~i~~ 552 (953)
T KOG0736|consen 478 KLQAIFSRAR-----RCSPAVLFLRNLDVLGIDQDGGEDARLLKVIRHLLSNEDFKFSCPPVIVVATTSSIEDLPADIQS 552 (953)
T ss_pred HHHHHHHHHh-----hcCceEEEEeccceeeecCCCchhHHHHHHHHHHHhcccccCCCCceEEEEeccccccCCHHHHH
Confidence 2222211111 11477999998888752 12333444443 11 2344566667888999999999
Q ss_pred cc-eEEEecCCChHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcC
Q 017884 191 RC-TRFRFAPLEPVHVTERLKHVIEAEGLDVTEG-GLAALVRLCN 233 (364)
Q Consensus 191 r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~-~~~~l~~~~~ 233 (364)
.+ ..+.++.+++++..+|++-+..... ++.+ ....++.++.
T Consensus 553 ~f~~ei~~~~lse~qRl~iLq~y~~~~~--~n~~v~~k~~a~~t~ 595 (953)
T KOG0736|consen 553 LFLHEIEVPALSEEQRLEILQWYLNHLP--LNQDVNLKQLARKTS 595 (953)
T ss_pred hhhhhccCCCCCHHHHHHHHHHHHhccc--cchHHHHHHHHHhcC
Confidence 87 7899999999999999998877554 3322 2344555543
No 282
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.41 E-value=9.4e-06 Score=75.75 Aligned_cols=152 Identities=15% Similarity=0.267 Sum_probs=92.1
Q ss_pred EEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEE-eCCCCCC------hHHHHHHHHHHHhcCccccCCccceEEEEEeC
Q 017884 77 LLLYGPPGTGKTSTILAVARKLYGAQYHNMILEL-NASDDRG------IDVVRQQIQDFASTQSFSFGVKASVKLVLLDE 149 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~-~~~~~~~------~~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe 149 (364)
+++.||||+|||++|-.+|..- .+.++.+ ++.+..+ ...+...+.+...+ .-.+|++|+
T Consensus 541 vLl~Gp~~sGKTaLAA~iA~~S-----~FPFvKiiSpe~miG~sEsaKc~~i~k~F~DAYkS---------~lsiivvDd 606 (744)
T KOG0741|consen 541 VLLEGPPGSGKTALAAKIALSS-----DFPFVKIISPEDMIGLSESAKCAHIKKIFEDAYKS---------PLSIIVVDD 606 (744)
T ss_pred EEEecCCCCChHHHHHHHHhhc-----CCCeEEEeChHHccCccHHHHHHHHHHHHHHhhcC---------cceEEEEcc
Confidence 8999999999999999998873 4555554 3222222 22333434443322 356999999
Q ss_pred CCCCC----------HHHHHHHHHHHHHhccCc--cEEEEeeccccCch--hhhccc-eEEEecCCCh-HHHHHHHHHHH
Q 017884 150 ADAMT----------KDAQFALRRVIEKYTKNT--RFALICNQVNKIIP--ALQSRC-TRFRFAPLEP-VHVTERLKHVI 213 (364)
Q Consensus 150 ~~~l~----------~~~~~~L~~~le~~~~~~--~~Il~~~~~~~l~~--~l~sr~-~~i~~~~~~~-~~~~~~l~~~~ 213 (364)
++.|. ....++|+-++.+.|+.. .+|++|++...... .+.+.+ ..++.+.++. +++.+++...
T Consensus 607 iErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~~~~~~~vl~~~- 685 (744)
T KOG0741|consen 607 IERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTTGEQLLEVLEEL- 685 (744)
T ss_pred hhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccCchHHHHHHHHHc-
Confidence 98884 344667777777766553 36776655443322 222333 5688888876 7777777653
Q ss_pred HHcCCCCCHHHHHHHHHHcCC-----CHHHHHHHHHHHH
Q 017884 214 EAEGLDVTEGGLAALVRLCNG-----DMRKALNILQSTH 247 (364)
Q Consensus 214 ~~~~~~i~~~~~~~l~~~~~g-----~~r~a~~~l~~~~ 247 (364)
+ .++++....+++.-.+ -+.+++.+++...
T Consensus 686 ---n-~fsd~~~~~~~~~~~~~~~~vgIKklL~lie~a~ 720 (744)
T KOG0741|consen 686 ---N-IFSDDEVRAIAEQLLSKKVNVGIKKLLMLIEMAR 720 (744)
T ss_pred ---c-CCCcchhHHHHHHHhccccchhHHHHHHHHHHHh
Confidence 3 2455656655544322 2566666666544
No 283
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=98.41 E-value=4.2e-05 Score=70.54 Aligned_cols=106 Identities=8% Similarity=0.150 Sum_probs=72.1
Q ss_pred eEEEEEeCCCCCCHHHHHHHHHHHHHh------ccCccEEEEeeccc---cCchhhhcc-ceEEEecCCChHHHHHHHHH
Q 017884 142 VKLVLLDEADAMTKDAQFALRRVIEKY------TKNTRFALICNQVN---KIIPALQSR-CTRFRFAPLEPVHVTERLKH 211 (364)
Q Consensus 142 ~~viiiDe~~~l~~~~~~~L~~~le~~------~~~~~~Il~~~~~~---~l~~~l~sr-~~~i~~~~~~~~~~~~~l~~ 211 (364)
+.|||||++..-... .+.+++.+.+- ..-..+||.|+... .+.+++-+| +..+.+...+++..++++..
T Consensus 149 ~PVVVIdnF~~k~~~-~~~iy~~laeWAa~Lv~~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~ 227 (431)
T PF10443_consen 149 RPVVVIDNFLHKAEE-NDFIYDKLAEWAASLVQNNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLS 227 (431)
T ss_pred CCEEEEcchhccCcc-cchHHHHHHHHHHHHHhcCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHH
Confidence 569999998776544 34444443332 23456888886543 344566566 57899999999999999998
Q ss_pred HHHHcC-C-------------------CCCHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 017884 212 VIEAEG-L-------------------DVTEGGLAALVRLCNGDMRKALNILQSTHM 248 (364)
Q Consensus 212 ~~~~~~-~-------------------~i~~~~~~~l~~~~~g~~r~a~~~l~~~~~ 248 (364)
.+.... . ..+...++.++..-||-+..+-.+.+++..
T Consensus 228 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiks 284 (431)
T PF10443_consen 228 QLDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKS 284 (431)
T ss_pred HhcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHc
Confidence 886531 1 124556777888889988888877777764
No 284
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=98.38 E-value=5.3e-05 Score=69.49 Aligned_cols=75 Identities=16% Similarity=0.234 Sum_probs=51.4
Q ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHHHhc--cCccEEEEeeccc---------------cCchhhhccc--eEEEecCCC
Q 017884 141 SVKLVLLDEADAMTKDAQFALRRVIEKYT--KNTRFALICNQVN---------------KIIPALQSRC--TRFRFAPLE 201 (364)
Q Consensus 141 ~~~viiiDe~~~l~~~~~~~L~~~le~~~--~~~~~Il~~~~~~---------------~l~~~l~sr~--~~i~~~~~~ 201 (364)
.+-||+|||+|++.++....+++.+...- +++.+|++.+... ........+. ..+.+|+++
T Consensus 172 ~~iViiIDdLDR~~~~~i~~~l~~ik~~~~~~~i~~Il~~D~~~l~~ai~~~~~~~~~~~~~~~yLeKiiq~~~~lP~~~ 251 (325)
T PF07693_consen 172 KRIVIIIDDLDRCSPEEIVELLEAIKLLLDFPNIIFILAFDPEILEKAIEKNYGEGFDEIDGREYLEKIIQVPFSLPPPS 251 (325)
T ss_pred ceEEEEEcchhcCCcHHHHHHHHHHHHhcCCCCeEEEEEecHHHHHHHHHhhcCcccccccHHHHHHhhcCeEEEeCCCC
Confidence 57799999999999888777777777653 4677777775321 1111222333 348888899
Q ss_pred hHHHHHHHHHHHHH
Q 017884 202 PVHVTERLKHVIEA 215 (364)
Q Consensus 202 ~~~~~~~l~~~~~~ 215 (364)
..++..++...+..
T Consensus 252 ~~~~~~~~~~~~~~ 265 (325)
T PF07693_consen 252 PSDLERYLNELLES 265 (325)
T ss_pred HHHHHHHHHHHHHH
Confidence 88888888877543
No 285
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=98.38 E-value=7.5e-05 Score=69.07 Aligned_cols=97 Identities=21% Similarity=0.250 Sum_probs=58.2
Q ss_pred HHHhcCCCCcEEEeCCCCccHHHHHHHHHHH-HcCCCCCCcEEEEeCCCCCChHHHHHHHHHHHhcCccccCCccceEEE
Q 017884 67 RLTSENRLPHLLLYGPPGTGKTSTILAVARK-LYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLV 145 (364)
Q Consensus 67 ~~~~~~~~~~lll~G~~G~GKt~la~~l~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~vi 145 (364)
.++..+ -|+++.||+|+|||+++.++... ....+. ......+...+.. .. .+......+|
T Consensus 204 ~fve~~--~Nli~lGp~GTGKThla~~l~~~~a~~sG~-----------f~T~a~Lf~~L~~---~~---lg~v~~~DlL 264 (449)
T TIGR02688 204 PLVEPN--YNLIELGPKGTGKSYIYNNLSPYVILISGG-----------TITVAKLFYNIST---RQ---IGLVGRWDVV 264 (449)
T ss_pred HHHhcC--CcEEEECCCCCCHHHHHHHHhHHHHHHcCC-----------cCcHHHHHHHHHH---HH---HhhhccCCEE
Confidence 344444 56999999999999999998877 221221 0112222222221 10 1222257899
Q ss_pred EEeCCCCCC----HHHHHHHHHHHHHh---------ccCccEEEEeeccc
Q 017884 146 LLDEADAMT----KDAQFALRRVIEKY---------TKNTRFALICNQVN 182 (364)
Q Consensus 146 iiDe~~~l~----~~~~~~L~~~le~~---------~~~~~~Il~~~~~~ 182 (364)
+|||+..++ ++....|..+|+.. ..++.+||++|-..
T Consensus 265 I~DEvgylp~~~~~~~v~imK~yMesg~fsRG~~~~~a~as~vfvGNi~~ 314 (449)
T TIGR02688 265 AFDEVATLKFAKPKELIGILKNYMESGSFTRGDETKSSDASFVFLGNVPL 314 (449)
T ss_pred EEEcCCCCcCCchHHHHHHHHHHHHhCceeccceeeeeeeEEEEEcccCC
Confidence 999999975 33456777777753 24566788876543
No 286
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.29 E-value=1.4e-05 Score=63.26 Aligned_cols=26 Identities=38% Similarity=0.691 Sum_probs=23.4
Q ss_pred EEEeCCCCccHHHHHHHHHHHHcCCC
Q 017884 77 LLLYGPPGTGKTSTILAVARKLYGAQ 102 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l~~~~ 102 (364)
+.++|+||+||||++..++..+...+
T Consensus 8 i~ITG~PGvGKtTl~~ki~e~L~~~g 33 (179)
T COG1618 8 IFITGRPGVGKTTLVLKIAEKLREKG 33 (179)
T ss_pred EEEeCCCCccHHHHHHHHHHHHHhcC
Confidence 89999999999999999999886553
No 287
>PRK10536 hypothetical protein; Provisional
Probab=98.27 E-value=3e-05 Score=67.18 Aligned_cols=120 Identities=16% Similarity=0.143 Sum_probs=67.9
Q ss_pred cchhccHHHHHHHHHHHhcCCCCcEEEeCCCCccHHHHHHHHHHHHc-CCCCCCcEEEEeCCCC---------CC-----
Q 017884 53 ADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLY-GAQYHNMILELNASDD---------RG----- 117 (364)
Q Consensus 53 ~~~vg~~~~~~~l~~~~~~~~~~~lll~G~~G~GKt~la~~l~~~l~-~~~~~~~~~~~~~~~~---------~~----- 117 (364)
..+.+.......+..++... +.+++.||+|||||+++.+++.... ... ...+.+..+.. .|
T Consensus 55 ~~i~p~n~~Q~~~l~al~~~--~lV~i~G~aGTGKT~La~a~a~~~l~~~~--~~kIiI~RP~v~~ge~LGfLPG~~~eK 130 (262)
T PRK10536 55 SPILARNEAQAHYLKAIESK--QLIFATGEAGCGKTWISAAKAAEALIHKD--VDRIIVTRPVLQADEDLGFLPGDIAEK 130 (262)
T ss_pred ccccCCCHHHHHHHHHHhcC--CeEEEECCCCCCHHHHHHHHHHHHHhcCC--eeEEEEeCCCCCchhhhCcCCCCHHHH
Confidence 34555556666666677664 4589999999999999999998632 322 22222222110 00
Q ss_pred h----HHHHHHHHHHH----------------hcCcccc--CCccceEEEEEeCCCCCCHHHHHHHHHHHHHhccCccEE
Q 017884 118 I----DVVRQQIQDFA----------------STQSFSF--GVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFA 175 (364)
Q Consensus 118 ~----~~~~~~i~~~~----------------~~~~~~~--~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~I 175 (364)
. ..+.+.+.... +-.++.+ +..-...+|||||++.++......++ .....++.+|
T Consensus 131 ~~p~~~pi~D~L~~~~~~~~~~~~~~~~~~~Iei~~l~ymRGrtl~~~~vIvDEaqn~~~~~~k~~l---tR~g~~sk~v 207 (262)
T PRK10536 131 FAPYFRPVYDVLVRRLGASFMQYCLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTAAQMKMFL---TRLGENVTVI 207 (262)
T ss_pred HHHHHHHHHHHHHHHhChHHHHHHHHhccCcEEEecHHHhcCCcccCCEEEEechhcCCHHHHHHHH---hhcCCCCEEE
Confidence 0 01111111110 0011100 11114579999999999986555554 4556789999
Q ss_pred EEee
Q 017884 176 LICN 179 (364)
Q Consensus 176 l~~~ 179 (364)
++.+
T Consensus 208 ~~GD 211 (262)
T PRK10536 208 VNGD 211 (262)
T ss_pred EeCC
Confidence 9885
No 288
>PHA02774 E1; Provisional
Probab=98.25 E-value=1.4e-05 Score=76.38 Aligned_cols=137 Identities=20% Similarity=0.236 Sum_probs=84.1
Q ss_pred HHHHHHHHHHhcCCCC-cEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCCCChHHHHHHHHHHHhcCccccCC
Q 017884 60 DIVDTIDRLTSENRLP-HLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGV 138 (364)
Q Consensus 60 ~~~~~l~~~~~~~~~~-~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 138 (364)
.....|+.++++.... .++|+||||+|||+++..+++.+. +..+..+|.....- +..
T Consensus 419 ~fl~~lk~~l~~~PKknciv~~GPP~TGKS~fa~sL~~~L~----G~vi~fvN~~s~Fw------------------Lqp 476 (613)
T PHA02774 419 SFLTALKDFLKGIPKKNCLVIYGPPDTGKSMFCMSLIKFLK----GKVISFVNSKSHFW------------------LQP 476 (613)
T ss_pred HHHHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHhC----CCEEEEEECccccc------------------cch
Confidence 4566788888655332 389999999999999999999983 22333344321100 111
Q ss_pred ccceEEEEEeCCCCCC-HHHHHHHHHHHHHhc-------------cCccEEEEeeccc---cCchhhhccceEEEecCC-
Q 017884 139 KASVKLVLLDEADAMT-KDAQFALRRVIEKYT-------------KNTRFALICNQVN---KIIPALQSRCTRFRFAPL- 200 (364)
Q Consensus 139 ~~~~~viiiDe~~~l~-~~~~~~L~~~le~~~-------------~~~~~Il~~~~~~---~l~~~l~sr~~~i~~~~~- 200 (364)
-.+.+++++||+-.-. .-....|+.+++..+ ..+.+|++||... .-.+.|.||...++|+.+
T Consensus 477 l~d~ki~vlDD~t~~~w~y~d~~Lrn~LdG~~v~lD~Khk~~~q~k~pPlIITSN~d~~~~~~~~yL~sRi~~f~F~n~~ 556 (613)
T PHA02774 477 LADAKIALLDDATHPCWDYIDTYLRNALDGNPVSIDCKHKAPVQIKCPPLLITSNIDVKAEDRYKYLHSRITVFEFPNPF 556 (613)
T ss_pred hccCCEEEEecCcchHHHHHHHHHHHHcCCCcceeeecccCcccccCCCEEEecCCCcccchhhHHhhhhEEEEECCCCC
Confidence 1147899999992221 122335666666432 1256788887432 334578889888887543
Q ss_pred ------------ChHHHHHHHHHHHHHcCC
Q 017884 201 ------------EPVHVTERLKHVIEAEGL 218 (364)
Q Consensus 201 ------------~~~~~~~~l~~~~~~~~~ 218 (364)
++...+.+..+...+..+
T Consensus 557 P~d~~G~P~f~ltd~~WKsFF~rlw~~LdL 586 (613)
T PHA02774 557 PLDENGNPVFELTDANWKSFFERLWSQLDL 586 (613)
T ss_pred CcCCCCCEeeeeCchhHHHHHHHHHHHcCC
Confidence 234567777777665544
No 289
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=98.25 E-value=5e-06 Score=70.26 Aligned_cols=115 Identities=20% Similarity=0.321 Sum_probs=64.7
Q ss_pred HHHHHHHHHHhcCCCCcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCCCChHHHHHH-------HHHHHhcC
Q 017884 60 DIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQ-------IQDFASTQ 132 (364)
Q Consensus 60 ~~~~~l~~~~~~~~~~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------i~~~~~~~ 132 (364)
+....+...+.++. ...++.|++|+|||+++..+...+...+ ..++-+..+. .....+.+. +..+....
T Consensus 5 ~Q~~a~~~~l~~~~-~~~~l~G~aGtGKT~~l~~~~~~~~~~g--~~v~~~apT~-~Aa~~L~~~~~~~a~Ti~~~l~~~ 80 (196)
T PF13604_consen 5 EQREAVRAILTSGD-RVSVLQGPAGTGKTTLLKALAEALEAAG--KRVIGLAPTN-KAAKELREKTGIEAQTIHSFLYRI 80 (196)
T ss_dssp HHHHHHHHHHHCTC-SEEEEEESTTSTHHHHHHHHHHHHHHTT----EEEEESSH-HHHHHHHHHHTS-EEEHHHHTTEE
T ss_pred HHHHHHHHHHhcCC-eEEEEEECCCCCHHHHHHHHHHHHHhCC--CeEEEECCcH-HHHHHHHHhhCcchhhHHHHHhcC
Confidence 34445555555542 3368999999999999999988876543 3333333322 122222222 11222111
Q ss_pred cccc-C---CccceEEEEEeCCCCCCHHHHHHHHHHHHHhccCccEEEEeec
Q 017884 133 SFSF-G---VKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQ 180 (364)
Q Consensus 133 ~~~~-~---~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~ 180 (364)
+... . ......+|||||+..+.......|++.+.. .++++|++.+.
T Consensus 81 ~~~~~~~~~~~~~~~vliVDEasmv~~~~~~~ll~~~~~--~~~klilvGD~ 130 (196)
T PF13604_consen 81 PNGDDEGRPELPKKDVLIVDEASMVDSRQLARLLRLAKK--SGAKLILVGDP 130 (196)
T ss_dssp CCEECCSSCC-TSTSEEEESSGGG-BHHHHHHHHHHS-T---T-EEEEEE-T
T ss_pred CcccccccccCCcccEEEEecccccCHHHHHHHHHHHHh--cCCEEEEECCc
Confidence 1100 0 012357999999999998887777777665 46789999864
No 290
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=98.16 E-value=2.3e-06 Score=70.21 Aligned_cols=64 Identities=17% Similarity=0.286 Sum_probs=38.9
Q ss_pred ceEEEEEeCCCCCC---HHHHHHHHHHHHHhccCccEEEEeec--cccCchhhhcc--ceEEEecCCChHHHHH
Q 017884 141 SVKLVLLDEADAMT---KDAQFALRRVIEKYTKNTRFALICNQ--VNKIIPALQSR--CTRFRFAPLEPVHVTE 207 (364)
Q Consensus 141 ~~~viiiDe~~~l~---~~~~~~L~~~le~~~~~~~~Il~~~~--~~~l~~~l~sr--~~~i~~~~~~~~~~~~ 207 (364)
...+++|||+..|- +.-.+++.++|+ ++..+|.+-.. ...+.+.+++| +.++.+.+-+.+.+..
T Consensus 95 ~~~liviDEIG~mEl~~~~F~~~v~~~l~---s~~~vi~vv~~~~~~~~l~~i~~~~~~~i~~vt~~NRd~l~~ 165 (168)
T PF03266_consen 95 SSDLIVIDEIGKMELKSPGFREAVEKLLD---SNKPVIGVVHKRSDNPFLEEIKRRPDVKIFEVTEENRDALPE 165 (168)
T ss_dssp CCHEEEE---STTCCC-CHHHHHHHHHHC---TTSEEEEE--SS--SCCHHHHHTTTTSEEEE--TTTCCCHHH
T ss_pred CCCEEEEeccchhhhcCHHHHHHHHHHHc---CCCcEEEEEecCCCcHHHHHHHhCCCcEEEEeChhHHhhHhh
Confidence 46799999998884 566777888877 23345555433 34678888888 7888887777666644
No 291
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=98.15 E-value=1e-05 Score=61.18 Aligned_cols=72 Identities=22% Similarity=0.409 Sum_probs=44.5
Q ss_pred EEEeCCCCccHHHHHHHHHHHHcCCC---CCCcEEEEeCCCCCChHHHHHHHHHHHhcCccccCCccceEEEEEeCCCCC
Q 017884 77 LLLYGPPGTGKTSTILAVARKLYGAQ---YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAM 153 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l 153 (364)
+.|+||||+|||++++.|++.+.... ....+...+... +- +....+..++++||+...
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~~~~~~~~~vy~~~~~~----~~---------------w~gY~~q~vvi~DD~~~~ 61 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKHIGEPTKDSVYTRNPGD----KF---------------WDGYQGQPVVIIDDFGQD 61 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHhccCCCCcEEeCCCcc----ch---------------hhccCCCcEEEEeecCcc
Confidence 47999999999999999999875321 111111111111 00 111124679999999888
Q ss_pred CHH----HHHHHHHHHHH
Q 017884 154 TKD----AQFALRRVIEK 167 (364)
Q Consensus 154 ~~~----~~~~L~~~le~ 167 (364)
... ....+.+++..
T Consensus 62 ~~~~~~~~~~~l~~l~s~ 79 (107)
T PF00910_consen 62 NDGYNYSDESELIRLISS 79 (107)
T ss_pred ccccchHHHHHHHHHHhc
Confidence 754 45566666664
No 292
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.09 E-value=0.00065 Score=63.82 Aligned_cols=132 Identities=16% Similarity=0.207 Sum_probs=80.4
Q ss_pred HHHHHHHHhcCCCCcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCCCC-hHHHHHHHHHHHhcCccccCCcc
Q 017884 62 VDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRG-IDVVRQQIQDFASTQSFSFGVKA 140 (364)
Q Consensus 62 ~~~l~~~~~~~~~~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~ 140 (364)
...+...+..... .++++||-++||||+++.+.+.+... .+.++..+... .....+.+........ .
T Consensus 26 ~~~l~~~~~~~~~-i~~i~GpR~~GKTtll~~l~~~~~~~-----~iy~~~~d~~~~~~~l~d~~~~~~~~~~----~-- 93 (398)
T COG1373 26 LPRLIKKLDLRPF-IILILGPRQVGKTTLLKLLIKGLLEE-----IIYINFDDLRLDRIELLDLLRAYIELKE----R-- 93 (398)
T ss_pred hHHHHhhcccCCc-EEEEECCccccHHHHHHHHHhhCCcc-----eEEEEecchhcchhhHHHHHHHHHHhhc----c--
Confidence 3344444444422 57999999999999998888876332 44554433221 1122333333333211 1
Q ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHHHhccCccEEEEeeccc----cCchhhhccceEEEecCCChHHHHHH
Q 017884 141 SVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVN----KIIPALQSRCTRFRFAPLEPVHVTER 208 (364)
Q Consensus 141 ~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~----~l~~~l~sr~~~i~~~~~~~~~~~~~ 208 (364)
+...+++||++.... -...+..+.+..+. .++++++... .....+..|...+.+.|++..+....
T Consensus 94 ~~~yifLDEIq~v~~-W~~~lk~l~d~~~~--~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~~ 162 (398)
T COG1373 94 EKSYIFLDEIQNVPD-WERALKYLYDRGNL--DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLKL 162 (398)
T ss_pred CCceEEEecccCchh-HHHHHHHHHccccc--eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHhh
Confidence 357999999999863 44555555555443 4555554332 45556777889999999999888653
No 293
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=98.08 E-value=2.4e-05 Score=59.91 Aligned_cols=57 Identities=19% Similarity=0.247 Sum_probs=39.9
Q ss_pred cchhccHHHHHHHHHH----HhcCC--CCc-EEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEE
Q 017884 53 ADVAAHRDIVDTIDRL----TSENR--LPH-LLLYGPPGTGKTSTILAVARKLYGAQYHNMILE 109 (364)
Q Consensus 53 ~~~vg~~~~~~~l~~~----~~~~~--~~~-lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~ 109 (364)
..+.||.-+.+.+.+. +.+.. .|- +.|+|++|+|||.+++.+|+.++..+....++.
T Consensus 25 ~~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~ly~~G~~S~~V~ 88 (127)
T PF06309_consen 25 RNLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHLYKSGMKSPFVH 88 (127)
T ss_pred HHccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHHHhcccCCCcee
Confidence 4577877666655444 44432 222 579999999999999999999987765544444
No 294
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=98.07 E-value=3.9e-05 Score=67.99 Aligned_cols=159 Identities=15% Similarity=0.190 Sum_probs=88.2
Q ss_pred hhccHHHHH----HHHHHHhcCCCCcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCCCChHHHHHHHHHHHh
Q 017884 55 VAAHRDIVD----TIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFAS 130 (364)
Q Consensus 55 ~vg~~~~~~----~l~~~~~~~~~~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 130 (364)
+.|..+..+ .+++.+..|....+++.||.|+|||.++..........+.....+.+|+.-....-.+++...+...
T Consensus 26 l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~~~dk~al~~I~rql~~ 105 (408)
T KOG2228|consen 26 LFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGELQTDKIALKGITRQLAL 105 (408)
T ss_pred eeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEEECccchhhHHHHHHHHHHHHH
Confidence 556444444 4455555677677999999999999988766665433344555666676543311112211111110
Q ss_pred c-----Ccc-ccCC---------------ccceEEEEEeCCCCCCHHH-HHHHHHHHHHhc---cCccEEEEeec---cc
Q 017884 131 T-----QSF-SFGV---------------KASVKLVLLDEADAMTKDA-QFALRRVIEKYT---KNTRFALICNQ---VN 182 (364)
Q Consensus 131 ~-----~~~-~~~~---------------~~~~~viiiDe~~~l~~~~-~~~L~~~le~~~---~~~~~Il~~~~---~~ 182 (364)
. ..+ +|.+ ....-+.|+||+|.+.+.. |-.|.++++-.. ..+.+|.+|.. .+
T Consensus 106 e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttrld~lE 185 (408)
T KOG2228|consen 106 ELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTRLDILE 185 (408)
T ss_pred HHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeeccccHHH
Confidence 0 000 0111 1124466677899887544 555666666322 23345555543 34
Q ss_pred cCchhhhccc--eEEEe-cCCChHHHHHHHHHHH
Q 017884 183 KIIPALQSRC--TRFRF-APLEPVHVTERLKHVI 213 (364)
Q Consensus 183 ~l~~~l~sr~--~~i~~-~~~~~~~~~~~l~~~~ 213 (364)
.+-+.++||+ .++.+ ++.+.++..+++++..
T Consensus 186 ~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 186 LLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred HHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 6677899998 33444 4445677777777754
No 295
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=98.07 E-value=5.3e-07 Score=82.48 Aligned_cols=140 Identities=24% Similarity=0.304 Sum_probs=73.3
Q ss_pred hhhccCCCCCcchhccHHHHHHHHHHHhcCC------------CCcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEE
Q 017884 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENR------------LPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILEL 110 (364)
Q Consensus 43 ~~~~~~p~~~~~~vg~~~~~~~l~~~~~~~~------------~~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~ 110 (364)
+++...|. +.|++.++..+.-.+-++. .-|+||.|.||+|||.+.+.+++-. +..+..
T Consensus 18 l~~s~aP~----i~g~~~iK~aill~L~~~~~~~~~~~~~~r~~ihiLlvGdpg~gKS~ll~~~~~~~------pr~v~~ 87 (331)
T PF00493_consen 18 LANSIAPS----IYGHEDIKKAILLQLFGGVEKNDPDGTRIRGNIHILLVGDPGTGKSQLLKYVAKLA------PRSVYT 87 (331)
T ss_dssp CHHHCSST----TTT-HHHHHHHCCCCTT--SCCCCT-TEE--S--EEEECSCHHCHHHHHHCCCCT-------SSEEEE
T ss_pred HHHHhCCc----CcCcHHHHHHHHHHHHhccccccccccccccccceeeccchhhhHHHHHHHHHhhC------CceEEE
Confidence 45555664 7788887776543332221 1269999999999999998775442 222222
Q ss_pred eCCC--CCChH--HHHHHH-HHH-HhcCccccCCccceEEEEEeCCCCCCHHHHHHHHHHHHHh-------------ccC
Q 017884 111 NASD--DRGID--VVRQQI-QDF-ASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKY-------------TKN 171 (364)
Q Consensus 111 ~~~~--~~~~~--~~~~~i-~~~-~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~-------------~~~ 171 (364)
++.. ..+.. ..++.. .++ .+.-.+.. ++++|++|||++.+.++....|.+.||.. +..
T Consensus 88 ~g~~~s~~gLta~~~~d~~~~~~~leaGalvl---ad~GiccIDe~dk~~~~~~~~l~eaMEqq~isi~kagi~~~l~ar 164 (331)
T PF00493_consen 88 SGKGSSAAGLTASVSRDPVTGEWVLEAGALVL---ADGGICCIDEFDKMKEDDRDALHEAMEQQTISIAKAGIVTTLNAR 164 (331)
T ss_dssp ECCGSTCCCCCEEECCCGGTSSECEEE-HHHH---CTTSEEEECTTTT--CHHHHHHHHHHHCSCEEECTSSSEEEEE--
T ss_pred CCCCcccCCccceeccccccceeEEeCCchhc---ccCceeeecccccccchHHHHHHHHHHcCeeccchhhhcccccch
Confidence 2211 11100 000000 000 00000001 25789999999999999999999999963 345
Q ss_pred ccEEEEeeccc-------------cCchhhhccceEE
Q 017884 172 TRFALICNQVN-------------KIIPALQSRCTRF 195 (364)
Q Consensus 172 ~~~Il~~~~~~-------------~l~~~l~sr~~~i 195 (364)
+.++.++|+.. .+.++|.+||..+
T Consensus 165 ~svlaa~NP~~g~~~~~~~~~~ni~l~~~LLSRFDLi 201 (331)
T PF00493_consen 165 CSVLAAANPKFGRYDPNKSLSENINLPPPLLSRFDLI 201 (331)
T ss_dssp -EEEEEE--TT--S-TTS-CGCCT-S-CCCHCC-SEE
T ss_pred hhhHHHHhhhhhhcchhhhhHHhcccchhhHhhcCEE
Confidence 66777776443 4677899999544
No 296
>PRK04296 thymidine kinase; Provisional
Probab=98.03 E-value=4e-05 Score=64.46 Aligned_cols=91 Identities=18% Similarity=0.276 Sum_probs=51.4
Q ss_pred EEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeC--CCCC---------Ch-------HHHHHHHHHHHhcCccccCC
Q 017884 77 LLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNA--SDDR---------GI-------DVVRQQIQDFASTQSFSFGV 138 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~--~~~~---------~~-------~~~~~~i~~~~~~~~~~~~~ 138 (364)
.+++||+|+|||+++..++..+...+....++ .+ .... +. ....+.+..+.. .
T Consensus 5 ~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~--k~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~-------~ 75 (190)
T PRK04296 5 EFIYGAMNSGKSTELLQRAYNYEERGMKVLVF--KPAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE-------E 75 (190)
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHcCCeEEEE--eccccccccCCcEecCCCCcccceEeCChHHHHHHHHh-------h
Confidence 58999999999999999988875444332222 21 0000 10 011111111111 0
Q ss_pred ccceEEEEEeCCCCCCHHHHHHHHHHHHHhccCccEEEEe
Q 017884 139 KASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALIC 178 (364)
Q Consensus 139 ~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~ 178 (364)
.....+|+|||++.+..+....|.+.+. +....+|++.
T Consensus 76 ~~~~dvviIDEaq~l~~~~v~~l~~~l~--~~g~~vi~tg 113 (190)
T PRK04296 76 GEKIDCVLIDEAQFLDKEQVVQLAEVLD--DLGIPVICYG 113 (190)
T ss_pred CCCCCEEEEEccccCCHHHHHHHHHHHH--HcCCeEEEEe
Confidence 1146799999999997765555555554 3355566665
No 297
>KOG0481 consensus DNA replication licensing factor, MCM5 component [Replication, recombination and repair]
Probab=98.03 E-value=0.00049 Score=64.34 Aligned_cols=129 Identities=29% Similarity=0.418 Sum_probs=77.2
Q ss_pred hhccHHHHHHHHHHHhcCC---CC---------cEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCC--CCh--
Q 017884 55 VAAHRDIVDTIDRLTSENR---LP---------HLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDD--RGI-- 118 (364)
Q Consensus 55 ~vg~~~~~~~l~~~~~~~~---~~---------~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~--~~~-- 118 (364)
+.|++++++.+.=++-+|. .| ++|+.|.||+.|+.+.+.+-+- .+..++-++... .|.
T Consensus 333 IfG~~DiKkAiaClLFgGsrK~LpDg~~lRGDINVLLLGDPgtAKSQlLKFvEkv------sPIaVYTSGKGSSAAGLTA 406 (729)
T KOG0481|consen 333 IFGHEDIKKAIACLLFGGSRKRLPDGVTLRGDINVLLLGDPGTAKSQLLKFVEKV------SPIAVYTSGKGSSAAGLTA 406 (729)
T ss_pred hcCchhHHHHHHHHhhcCccccCCCcceeccceeEEEecCCchhHHHHHHHHHhc------CceEEEecCCCccccccee
Confidence 6688888888766665441 11 3899999999999999887654 222222222111 110
Q ss_pred HHHHHHHHHHHhcCccccCC----ccceEEEEEeCCCCCCHHHHHHHHHHHHHhc-------------cCccEEEEeecc
Q 017884 119 DVVRQQIQDFASTQSFSFGV----KASVKLVLLDEADAMTKDAQFALRRVIEKYT-------------KNTRFALICNQV 181 (364)
Q Consensus 119 ~~~~~~i~~~~~~~~~~~~~----~~~~~viiiDe~~~l~~~~~~~L~~~le~~~-------------~~~~~Il~~~~~ 181 (364)
..+++ ..+..|.+.. .++++|+.|||+|.|.++..-++-+.||... ..|.++.++|+.
T Consensus 407 SV~RD-----~~tReFylEGGAMVLADgGVvCIDEFDKMre~DRVAIHEAMEQQTISIAKAGITT~LNSRtSVLAAANpv 481 (729)
T KOG0481|consen 407 SVIRD-----PSTREFYLEGGAMVLADGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRTSVLAAANPV 481 (729)
T ss_pred eEEec-----CCcceEEEecceEEEecCCEEEeehhhccCchhhhHHHHHHHhhhHHHhhhcceeeecchhhhhhhcCCc
Confidence 01111 1111111111 1257899999999999999889999998642 344455555533
Q ss_pred c-------------cCchhhhccceE
Q 017884 182 N-------------KIIPALQSRCTR 194 (364)
Q Consensus 182 ~-------------~l~~~l~sr~~~ 194 (364)
. .+.+++.||+..
T Consensus 482 fGRyDd~Kt~~dNIDf~~TILSRFDm 507 (729)
T KOG0481|consen 482 FGRYDDTKTGEDNIDFMPTILSRFDM 507 (729)
T ss_pred cccccccCCcccccchhhhHhhhccE
Confidence 2 356788899743
No 298
>PHA02624 large T antigen; Provisional
Probab=98.01 E-value=4.1e-05 Score=73.62 Aligned_cols=118 Identities=17% Similarity=0.175 Sum_probs=72.2
Q ss_pred HHHHHHHHHhcCCCCc-EEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCCCChHHHHHHHHHHHhcCccccCCc
Q 017884 61 IVDTIDRLTSENRLPH-LLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVK 139 (364)
Q Consensus 61 ~~~~l~~~~~~~~~~~-lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 139 (364)
....++.++++-.... ++|+||+|+|||+++.++++.+. ..++.+|.+.... .... +..
T Consensus 417 ~~~~lk~~l~giPKk~~il~~GPpnTGKTtf~~sLl~~L~-----G~vlsVNsPt~ks--------~FwL-------~pl 476 (647)
T PHA02624 417 IYDILKLIVENVPKRRYWLFKGPVNSGKTTLAAALLDLCG-----GKSLNVNCPPDKL--------NFEL-------GCA 476 (647)
T ss_pred HHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHcC-----CeEEEeeCCcchh--------HHHh-------hhh
Confidence 3444555555543333 79999999999999999999983 2334455443211 1111 111
Q ss_pred cceEEEEEeCCCCCCH-----------HHHHHHHHHHHHh-cc-------------CccEEEEeeccccCchhhhccc-e
Q 017884 140 ASVKLVLLDEADAMTK-----------DAQFALRRVIEKY-TK-------------NTRFALICNQVNKIIPALQSRC-T 193 (364)
Q Consensus 140 ~~~~viiiDe~~~l~~-----------~~~~~L~~~le~~-~~-------------~~~~Il~~~~~~~l~~~l~sr~-~ 193 (364)
.+.+++++|++-.-.- +....|+.+|+.. +- -...|+++ +...++.+++-|+ .
T Consensus 477 ~D~~~~l~dD~t~~~~~~~~Lp~G~~~dNl~~lRn~LDG~V~v~ld~KH~n~~q~~~PPlliT~-Ney~iP~T~~~Rf~~ 555 (647)
T PHA02624 477 IDQFMVVFEDVKGQPADNKDLPSGQGMNNLDNLRDYLDGSVPVNLEKKHLNKRSQIFPPGIVTM-NEYLIPQTVKARFAK 555 (647)
T ss_pred hhceEEEeeeccccccccccCCcccccchhhHHHhhcCCCCccccchhccCchhccCCCeEEee-cCcccchhHHHHHHH
Confidence 1578999999843221 1236677777754 20 12344444 5578889999997 6
Q ss_pred EEEecC
Q 017884 194 RFRFAP 199 (364)
Q Consensus 194 ~i~~~~ 199 (364)
++.|.+
T Consensus 556 ~~~F~~ 561 (647)
T PHA02624 556 VLDFKP 561 (647)
T ss_pred hccccc
Confidence 777754
No 299
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=97.98 E-value=1.2e-05 Score=74.10 Aligned_cols=118 Identities=19% Similarity=0.258 Sum_probs=66.7
Q ss_pred CcEEEeCCCCccHHHHHHHHHHHHcCCCC-CCcEEEEeCCCCCChHHHHHHHHHHH-hcCcc-----ccCCccceEEEEE
Q 017884 75 PHLLLYGPPGTGKTSTILAVARKLYGAQY-HNMILELNASDDRGIDVVRQQIQDFA-STQSF-----SFGVKASVKLVLL 147 (364)
Q Consensus 75 ~~lll~G~~G~GKt~la~~l~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~-----~~~~~~~~~viii 147 (364)
.+++|||++|+|||.+.-.+...+..... ...+.++ ...+...+.... ...+. .+.. +..||.+
T Consensus 63 ~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh~F-------m~~vh~~l~~~~~~~~~l~~va~~l~~--~~~lLcf 133 (362)
T PF03969_consen 63 KGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFHEF-------MLDVHSRLHQLRGQDDPLPQVADELAK--ESRLLCF 133 (362)
T ss_pred ceEEEECCCCCchhHHHHHHHHhCCccccccccccHH-------HHHHHHHHHHHhCCCccHHHHHHHHHh--cCCEEEE
Confidence 34999999999999999999998754211 1111110 111111111111 00000 0111 4679999
Q ss_pred eCCCCCCHHHHHHHHHHHHHhc-cCccEEEEeeccc--------------cCchhhhccceEEEecCCC
Q 017884 148 DEADAMTKDAQFALRRVIEKYT-KNTRFALICNQVN--------------KIIPALQSRCTRFRFAPLE 201 (364)
Q Consensus 148 De~~~l~~~~~~~L~~~le~~~-~~~~~Il~~~~~~--------------~l~~~l~sr~~~i~~~~~~ 201 (364)
||++.-.....-.|.++++..- ..+++|.+||.+. ...+.|.++|.++.+....
T Consensus 134 DEF~V~DiaDAmil~rLf~~l~~~gvvlVaTSN~~P~~Ly~~gl~r~~Flp~I~~l~~~~~vv~ld~~~ 202 (362)
T PF03969_consen 134 DEFQVTDIADAMILKRLFEALFKRGVVLVATSNRPPEDLYKNGLQRERFLPFIDLLKRRCDVVELDGGV 202 (362)
T ss_pred eeeeccchhHHHHHHHHHHHHHHCCCEEEecCCCChHHHcCCcccHHHHHHHHHHHHhceEEEEecCCC
Confidence 9998776555555555555543 3455666666432 1234667889999887663
No 300
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.98 E-value=0.00015 Score=76.18 Aligned_cols=154 Identities=20% Similarity=0.290 Sum_probs=103.8
Q ss_pred CcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCCCChHHHHHHHHHHHhcCc--cccCC------ccceEEEE
Q 017884 75 PHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQS--FSFGV------KASVKLVL 146 (364)
Q Consensus 75 ~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~------~~~~~vii 146 (364)
-++++.||+.+|||+++..+++.. +..++.+|..... ...+.+..+..... ..|.. ..++--|+
T Consensus 889 fP~LiQGpTSSGKTSMI~yla~~t-----ghkfVRINNHEHT---dlqeYiGTyvTdd~G~lsFkEGvLVeAlR~GyWIV 960 (4600)
T COG5271 889 FPLLIQGPTSSGKTSMILYLARET-----GHKFVRINNHEHT---DLQEYIGTYVTDDDGSLSFKEGVLVEALRRGYWIV 960 (4600)
T ss_pred CcEEEecCCCCCcchHHHHHHHHh-----CccEEEecCcccc---hHHHHhhceeecCCCceeeehhHHHHHHhcCcEEE
Confidence 449999999999999999999986 4556666644321 22333333221110 00110 11355899
Q ss_pred EeCCCCCCHHHHHHHHHHHHHh-------------ccCccEEEEeeccc-------cCchhhhccceEEEecCCChHHHH
Q 017884 147 LDEADAMTKDAQFALRRVIEKY-------------TKNTRFALICNQVN-------KIIPALQSRCTRFRFAPLEPVHVT 206 (364)
Q Consensus 147 iDe~~~l~~~~~~~L~~~le~~-------------~~~~~~Il~~~~~~-------~l~~~l~sr~~~i~~~~~~~~~~~ 206 (364)
+||...-+.+..++|-++++.. |..-..+|+|.+|. -+..+++.|+..++|...+++++.
T Consensus 961 LDELNLApTDVLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQNppg~YgGRK~LSrAFRNRFlE~hFddipedEle 1040 (4600)
T COG5271 961 LDELNLAPTDVLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQNPPGGYGGRKGLSRAFRNRFLEMHFDDIPEDELE 1040 (4600)
T ss_pred eeccccCcHHHHHHHHHhhccccceecCCcceeeccCCCeeEEeecCCCccccchHHHHHHHHhhhHhhhcccCcHHHHH
Confidence 9999999999999999999852 22223456664433 356788899999999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHcC-CCHHHHHH
Q 017884 207 ERLKHVIEAEGLDVTEGGLAALVRLCN-GDMRKALN 241 (364)
Q Consensus 207 ~~l~~~~~~~~~~i~~~~~~~l~~~~~-g~~r~a~~ 241 (364)
.++..+ +.|.+.-+..+++... -.+|+-++
T Consensus 1041 ~ILh~r-----c~iapSyakKiVeVyr~Ls~rRs~~ 1071 (4600)
T COG5271 1041 EILHGR-----CEIAPSYAKKIVEVYRGLSSRRSIN 1071 (4600)
T ss_pred HHHhcc-----CccCHHHHHHHHHHHHHhhhhhhHH
Confidence 999874 5678888777776653 34444444
No 301
>COG3899 Predicted ATPase [General function prediction only]
Probab=97.97 E-value=0.0017 Score=66.79 Aligned_cols=106 Identities=11% Similarity=0.118 Sum_probs=73.6
Q ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHHHhc--c--CccEEEEeeccccCchhhhcc--ceEEEecCCChHHHHHHHHHHHH
Q 017884 141 SVKLVLLDEADAMTKDAQFALRRVIEKYT--K--NTRFALICNQVNKIIPALQSR--CTRFRFAPLEPVHVTERLKHVIE 214 (364)
Q Consensus 141 ~~~viiiDe~~~l~~~~~~~L~~~le~~~--~--~~~~Il~~~~~~~l~~~l~sr--~~~i~~~~~~~~~~~~~l~~~~~ 214 (364)
++-|+|+||+|...+...+.|..+|...+ . ...+..+.+....+....++. ...+.+.|++..+....+...+.
T Consensus 154 ~plVi~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~ 233 (849)
T COG3899 154 HPLVIVLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLG 233 (849)
T ss_pred CCeEEEEecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhC
Confidence 57899999999999998888888888654 0 111111112222222233333 46799999999999999998875
Q ss_pred HcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 017884 215 AEGLDVTEGGLAALVRLCNGDMRKALNILQSTH 247 (364)
Q Consensus 215 ~~~~~i~~~~~~~l~~~~~g~~r~a~~~l~~~~ 247 (364)
.. ...+.+..+.+.+.+.|||--+...++.+.
T Consensus 234 ~~-~~~~~p~~~~i~~kt~GnPfFi~e~lk~l~ 265 (849)
T COG3899 234 CT-KLLPAPLLELIFEKTKGNPFFIEEFLKALY 265 (849)
T ss_pred Cc-ccccchHHHHHHHHhcCCCccHHHHHHHHH
Confidence 42 356778889999999999877666665544
No 302
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.93 E-value=0.0002 Score=63.30 Aligned_cols=150 Identities=19% Similarity=0.289 Sum_probs=87.8
Q ss_pred hhccHHHHHHH---HHHHhcCCCCcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCCCChHHHHHHHHHHHhc
Q 017884 55 VAAHRDIVDTI---DRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFAST 131 (364)
Q Consensus 55 ~vg~~~~~~~l---~~~~~~~~~~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 131 (364)
+|--++++..+ .+.+... .+|+++.|..|+||+++++..+--. +..++++..+...+..++++.++.....
T Consensus 10 lVlf~~ai~hi~ri~RvL~~~-~Gh~LLvG~~GsGr~sl~rLaa~i~-----~~~~~~i~~~~~y~~~~f~~dLk~~~~~ 83 (268)
T PF12780_consen 10 LVLFDEAIEHIARISRVLSQP-RGHALLVGVGGSGRQSLARLAAFIC-----GYEVFQIEITKGYSIKDFKEDLKKALQK 83 (268)
T ss_dssp ----HHHHHHHHHHHHHHCST-TEEEEEECTTTSCHHHHHHHHHHHT-----TEEEE-TTTSTTTHHHHHHHHHHHHHHH
T ss_pred eeeHHHHHHHHHHHHHHHcCC-CCCeEEecCCCccHHHHHHHHHHHh-----ccceEEEEeeCCcCHHHHHHHHHHHHHH
Confidence 34444555544 4444443 3679999999999999998655443 5566666666666677777777665443
Q ss_pred CccccCCccceEEEEEeCCCCCCHHHH---------------------HHHHH---------------------HHHHhc
Q 017884 132 QSFSFGVKASVKLVLLDEADAMTKDAQ---------------------FALRR---------------------VIEKYT 169 (364)
Q Consensus 132 ~~~~~~~~~~~~viiiDe~~~l~~~~~---------------------~~L~~---------------------~le~~~ 169 (364)
. +..+.+.+++++|.+-..+.-. +.+.. +++.-.
T Consensus 84 a----g~~~~~~vfll~d~qi~~~~fLe~in~LL~sGeip~LF~~eE~~~i~~~l~~~~~~~~~~~~~~~~~~~F~~rvr 159 (268)
T PF12780_consen 84 A----GIKGKPTVFLLTDSQIVDESFLEDINSLLSSGEIPNLFTKEELDNIISSLREEAKAEGISDSRESLYEFFIERVR 159 (268)
T ss_dssp H----HCS-S-EEEEEECCCSSSCHHHHHHHHHHHCSS-TTTS-TCHHHHHHHHHHHHHHHCT--SSHHHHHHHHHHHHC
T ss_pred H----hccCCCeEEEecCcccchHhHHHHHHHHHhCCCCCCCccHHHHHHHHHHhHHHHHHcCCCCchHHHHHHHHHHHH
Confidence 2 2222477888888766542211 11111 112223
Q ss_pred cCccEEEEeeccc-------cCchhhhccceEEEecCCChHHHHHHHHHHHH
Q 017884 170 KNTRFALICNQVN-------KIIPALQSRCTRFRFAPLEPVHVTERLKHVIE 214 (364)
Q Consensus 170 ~~~~~Il~~~~~~-------~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~ 214 (364)
.+..+|++-++.. ...|.|.++|.+.-|.+.+.+.+..+-...+.
T Consensus 160 ~nLHivl~~sp~~~~~r~~~~~fPaL~~~ctIdW~~~W~~eaL~~Va~~~l~ 211 (268)
T PF12780_consen 160 KNLHIVLCMSPVGPNFRDRCRSFPALVNCCTIDWFDPWPEEALLSVANKFLS 211 (268)
T ss_dssp CCEEEEEEESTTTTCCCHHHHHHCCHHHHSEEEEEES--HHHHHHHHHHHCC
T ss_pred hheeEEEEECCCCchHHHHHHhCcchhcccEEEeCCcCCHHHHHHHHHHHHH
Confidence 5667777765433 34567788898999999999888777665543
No 303
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.87 E-value=0.00015 Score=58.94 Aligned_cols=24 Identities=38% Similarity=0.749 Sum_probs=21.6
Q ss_pred EEEeCCCCccHHHHHHHHHHHHcC
Q 017884 77 LLLYGPPGTGKTSTILAVARKLYG 100 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l~~ 100 (364)
++|+||+|+|||+++..++.....
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~ 25 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIAT 25 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHh
Confidence 689999999999999999988754
No 304
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=97.81 E-value=0.00011 Score=63.93 Aligned_cols=185 Identities=18% Similarity=0.170 Sum_probs=106.6
Q ss_pred cEEEeCCCCccHHHHHHHHHHHHc-CCCCCCcEEEEeCCCCCChHHHHHHHHHHHhcCcc------ccCCccceEEEEEe
Q 017884 76 HLLLYGPPGTGKTSTILAVARKLY-GAQYHNMILELNASDDRGIDVVRQQIQDFASTQSF------SFGVKASVKLVLLD 148 (364)
Q Consensus 76 ~lll~G~~G~GKt~la~~l~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~------~~~~~~~~~viiiD 148 (364)
++++.||+|.||+.+++.+...-. ....+-.++++|+....+.......+........- ..-...+++.+++|
T Consensus 210 p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrgd~amsalfghvkgaftga~~~r~gllrsadggmlfld 289 (531)
T COG4650 210 PILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRGDTAMSALFGHVKGAFTGARESREGLLRSADGGMLFLD 289 (531)
T ss_pred CeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecCchHHHHHHhhhccccccchhhhhhhhccCCCceEehH
Confidence 499999999999999998865321 12345678999999887766554443322111000 00012367899999
Q ss_pred CCCCCCHHHHHHHHHHHHHhc-----------cCccEEEEee-------ccccCchhhhccceEEEecCCChHHHH----
Q 017884 149 EADAMTKDAQFALRRVIEKYT-----------KNTRFALICN-------QVNKIIPALQSRCTRFRFAPLEPVHVT---- 206 (364)
Q Consensus 149 e~~~l~~~~~~~L~~~le~~~-----------~~~~~Il~~~-------~~~~l~~~l~sr~~~i~~~~~~~~~~~---- 206 (364)
|+..+..+.|.-|++.+++.. ++..+|.-+- ......+.+-.|.....|.-|...+..
T Consensus 290 eigelgadeqamllkaieekrf~pfgsdr~v~sdfqliagtvrdlrq~vaeg~fredl~arinlwtf~lpgl~qr~edie 369 (531)
T COG4650 290 EIGELGADEQAMLLKAIEEKRFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIE 369 (531)
T ss_pred hhhhcCccHHHHHHHHHHhhccCCCCCccccccchHHhhhhHHHHHHHHhccchHHHHHHhhheeeeeccccccCccccC
Confidence 999999999999999999732 1122222220 011233444455555555444332211
Q ss_pred ----HHHHHHHHHc--CCCCCHHHHHHHHHH-------cCCCHHHHHHHHHHHHHh--cccCchHHHHH
Q 017884 207 ----ERLKHVIEAE--GLDVTEGGLAALVRL-------CNGDMRKALNILQSTHMA--SQQITEEAVYL 260 (364)
Q Consensus 207 ----~~l~~~~~~~--~~~i~~~~~~~l~~~-------~~g~~r~a~~~l~~~~~~--~~~i~~~~v~~ 260 (364)
--+.+.+... .+.+.-++-..-... ..||+|.+-..+...+.. .+.||.+.|+.
T Consensus 370 pnldyelerha~~~g~~vrfntearra~l~fa~spqa~w~gnfrelsasvtrmatlad~grit~~~ve~ 438 (531)
T COG4650 370 PNLDYELERHASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATLADSGRITLDVVED 438 (531)
T ss_pred CCccHHHHHHHHhhCceeeeehHHHHHHHHhccCcchhhcccHHHHhHHHHHHHHHhcCCceeHHHHHH
Confidence 1133333332 334444544333322 258999887766655543 36888887754
No 305
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.81 E-value=0.00024 Score=74.73 Aligned_cols=142 Identities=21% Similarity=0.288 Sum_probs=91.4
Q ss_pred CcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCCCChHHHHHHHH---------HHH-hcCccccCCccceEE
Q 017884 75 PHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQ---------DFA-STQSFSFGVKASVKL 144 (364)
Q Consensus 75 ~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~---------~~~-~~~~~~~~~~~~~~v 144 (364)
.++++.|.||+|||+++.++|+.. +...+.+|.+.... +-+.+. ++. ...|+ .....++.-
T Consensus 1544 kpilLEGsPGVGKTSlItaLAr~t-----G~kliRINLSeQTd---L~DLfGsd~Pve~~Gef~w~dapf-L~amr~G~W 1614 (4600)
T COG5271 1544 KPILLEGSPGVGKTSLITALARKT-----GKKLIRINLSEQTD---LCDLFGSDLPVEEGGEFRWMDAPF-LHAMRDGGW 1614 (4600)
T ss_pred CceeecCCCCccHHHHHHHHHHHh-----cCceEEeeccccch---HHHHhCCCCCcccCceeEecccHH-HHHhhcCCE
Confidence 349999999999999999999986 44555666554321 111110 000 01111 122235779
Q ss_pred EEEeCCCCCCHHHHHHHHHHHHHhc--------------cCccEEEEeecc-------ccCchhhhccceEEEecCCChH
Q 017884 145 VLLDEADAMTKDAQFALRRVIEKYT--------------KNTRFALICNQV-------NKIIPALQSRCTRFRFAPLEPV 203 (364)
Q Consensus 145 iiiDe~~~l~~~~~~~L~~~le~~~--------------~~~~~Il~~~~~-------~~l~~~l~sr~~~i~~~~~~~~ 203 (364)
|++||+...+....+.|-..++... ++. .||++-+| ..+++.+..|+.++.+..++.+
T Consensus 1615 VlLDEiNLaSQSVlEGLNacLDhR~eayIPEld~~f~~Hpnf-rVFAaqNPq~qggGRKgLPkSF~nRFsvV~~d~lt~d 1693 (4600)
T COG5271 1615 VLLDEINLASQSVLEGLNACLDHRREAYIPELDKTFDVHPNF-RVFAAQNPQDQGGGRKGLPKSFLNRFSVVKMDGLTTD 1693 (4600)
T ss_pred EEeehhhhhHHHHHHHHHHHHhhccccccccccceeeccCCe-eeeeecCchhcCCCcccCCHHHhhhhheEEecccccc
Confidence 9999998888888888877776421 223 35555322 3578899999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 017884 204 HVTERLKHVIEAEGLDVTEGGLAALVR 230 (364)
Q Consensus 204 ~~~~~l~~~~~~~~~~i~~~~~~~l~~ 230 (364)
++..+.... -..+.++-...+++
T Consensus 1694 Di~~Ia~~~----yp~v~~d~~~kiik 1716 (4600)
T COG5271 1694 DITHIANKM----YPQVNEDWRLKIIK 1716 (4600)
T ss_pred hHHHHHHhh----CCccChHHHHHHHH
Confidence 987776554 34556665544443
No 306
>PRK13695 putative NTPase; Provisional
Probab=97.81 E-value=0.00066 Score=56.18 Aligned_cols=70 Identities=11% Similarity=0.232 Sum_probs=45.8
Q ss_pred ceEEEEEeCCCCCC---HHHHHHHHHHHHHhccCccEEEEeeccc--cCchhhhcc--ceEEEecCCChHHHHHHHHHHH
Q 017884 141 SVKLVLLDEADAMT---KDAQFALRRVIEKYTKNTRFALICNQVN--KIIPALQSR--CTRFRFAPLEPVHVTERLKHVI 213 (364)
Q Consensus 141 ~~~viiiDe~~~l~---~~~~~~L~~~le~~~~~~~~Il~~~~~~--~l~~~l~sr--~~~i~~~~~~~~~~~~~l~~~~ 213 (364)
++.++++||+..+. ....+.+..+++ ....+|++++... ...+.+.++ +.++++.+-+.+++...+.++.
T Consensus 96 ~~~~lllDE~~~~e~~~~~~~~~l~~~~~---~~~~~i~v~h~~~~~~~~~~i~~~~~~~i~~~~~~~r~~~~~~~~~~~ 172 (174)
T PRK13695 96 EADVIIIDEIGKMELKSPKFVKAVEEVLD---SEKPVIATLHRRSVHPFVQEIKSRPGGRVYELTPENRDSLPFEILNRL 172 (174)
T ss_pred CCCEEEEECCCcchhhhHHHHHHHHHHHh---CCCeEEEEECchhhHHHHHHHhccCCcEEEEEcchhhhhHHHHHHHHH
Confidence 47799999975542 333455555553 2356777776532 345566666 5888898888888877776654
No 307
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.80 E-value=6.8e-05 Score=63.15 Aligned_cols=37 Identities=11% Similarity=0.322 Sum_probs=22.5
Q ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHHHhccCccEEEEeec
Q 017884 141 SVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQ 180 (364)
Q Consensus 141 ~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~ 180 (364)
...+|||||++.+++..... ++.....++++|++.+.
T Consensus 119 ~~~~iIvDEaQN~t~~~~k~---ilTR~g~~skii~~GD~ 155 (205)
T PF02562_consen 119 DNAFIIVDEAQNLTPEELKM---ILTRIGEGSKIIITGDP 155 (205)
T ss_dssp -SEEEEE-SGGG--HHHHHH---HHTTB-TT-EEEEEE--
T ss_pred cceEEEEecccCCCHHHHHH---HHcccCCCcEEEEecCc
Confidence 46799999999999765444 45556678999999853
No 308
>PF10923 DUF2791: P-loop Domain of unknown function (DUF2791); InterPro: IPR021228 This is a family of proteins found in archaea and bacteria. Some of the proteins in this family are annotated as being methyl-accepting chemotaxis proteins and ATP/GTP binding proteins.
Probab=97.79 E-value=0.003 Score=58.99 Aligned_cols=93 Identities=24% Similarity=0.288 Sum_probs=62.4
Q ss_pred ceEEEEEeCCCCCC--------HHHHHHHHHHHHHhc----cCccEEEEeeccc--------cCchhhhcc---------
Q 017884 141 SVKLVLLDEADAMT--------KDAQFALRRVIEKYT----KNTRFALICNQVN--------KIIPALQSR--------- 191 (364)
Q Consensus 141 ~~~viiiDe~~~l~--------~~~~~~L~~~le~~~----~~~~~Il~~~~~~--------~l~~~l~sr--------- 191 (364)
.+-+|+|||++.+. ....+.|+.++++.. ++..+++++++.. .-.++|.+|
T Consensus 239 ~GLlI~lDE~e~l~kl~~~~~R~~~ye~lr~lidd~~~G~~~gL~~~~~gTPef~eD~rrGv~sY~AL~~RL~~~~~~~~ 318 (416)
T PF10923_consen 239 KGLLILLDELENLYKLRNDQAREKNYEALRQLIDDIDQGRAPGLYFVFAGTPEFFEDGRRGVYSYEALAQRLAEEFFADD 318 (416)
T ss_pred CceEEEEechHHHHhcCChHHHHHHHHHHHHHHHHHhcCCCCceEEEEeeCHHHhhCccccccccHHHHHHHhccccccc
Confidence 45699999998773 234577888887643 3566667663211 224556555
Q ss_pred ------ceEEEecCCChHHHHHHHHHHHHH------cCCCCCHHHHHHHHHHcC
Q 017884 192 ------CTRFRFAPLEPVHVTERLKHVIEA------EGLDVTEGGLAALVRLCN 233 (364)
Q Consensus 192 ------~~~i~~~~~~~~~~~~~l~~~~~~------~~~~i~~~~~~~l~~~~~ 233 (364)
..++.++|++.+++...+.+...- ....++++.+..+++.+.
T Consensus 319 ~~~n~~~pvIrL~~l~~eel~~l~~klr~i~a~~~~~~~~v~d~~l~~~~~~~~ 372 (416)
T PF10923_consen 319 GFDNLRAPVIRLQPLTPEELLELLEKLRDIYAEAYGYESRVDDEELKAFAQHVA 372 (416)
T ss_pred cccCccCceecCCCCCHHHHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHH
Confidence 346899999999998887776542 234678888888886653
No 309
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.77 E-value=0.0021 Score=55.56 Aligned_cols=131 Identities=15% Similarity=0.220 Sum_probs=71.1
Q ss_pred cEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCCC---------------ChHHH-------HHHHHHHHhcCc
Q 017884 76 HLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDR---------------GIDVV-------RQQIQDFASTQS 133 (364)
Q Consensus 76 ~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~---------------~~~~~-------~~~i~~~~~~~~ 133 (364)
.+++.|++|+|||+++..+...+...- ..++-+...... ..+.+ ...+.+.....+
T Consensus 15 r~viIG~sGSGKT~li~~lL~~~~~~f--~~I~l~t~~~n~~~~~~i~p~~i~~~~~~e~le~~l~~~k~~I~k~~~k~~ 92 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTLIKSLLYYLRHKF--DHIFLITPEYNNEYYKYIWPDHIFKVFDKEELEYILIRQKEKIEKYIKKSP 92 (241)
T ss_pred eEEEECCCCCCHHHHHHHHHHhhcccC--CEEEEEecCCchhhhhhcchhhccccccHHHHHHHHHHHHHHHHHHhhhhc
Confidence 389999999999999999988763221 111111111100 01111 111222222111
Q ss_pred cccCCccceEEEEEeCCCCCCHHHHHHHHHHHHHhc-cCccEEEEeeccccCchhhhccceEEEecCCChHHHHHHHHH
Q 017884 134 FSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYT-KNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKH 211 (364)
Q Consensus 134 ~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~-~~~~~Il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~ 211 (364)
. .......+||+||+..- ......+..++.... -++.+|+++.....+++.+++-...+-+-+.+..++..++..
T Consensus 93 ~--~k~~~~~LiIlDD~~~~-~~k~~~l~~~~~~gRH~~is~i~l~Q~~~~lp~~iR~n~~y~i~~~~s~~dl~~i~~~ 168 (241)
T PF04665_consen 93 Q--KKNNPRFLIILDDLGDK-KLKSKILRQFFNNGRHYNISIIFLSQSYFHLPPNIRSNIDYFIIFNNSKRDLENIYRN 168 (241)
T ss_pred c--cCCCCCeEEEEeCCCCc-hhhhHHHHHHHhcccccceEEEEEeeecccCCHHHhhcceEEEEecCcHHHHHHHHHh
Confidence 1 11124779999998542 112334555554332 245678888888889998887775444335666666555544
No 310
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=97.76 E-value=3.9e-05 Score=71.11 Aligned_cols=88 Identities=26% Similarity=0.329 Sum_probs=52.2
Q ss_pred EEEeCCCCccHHHHHHHHHHHH--cCCCCCCcEEEEeCCCCCChHHHHHHHH----------------HHHhcCccccCC
Q 017884 77 LLLYGPPGTGKTSTILAVARKL--YGAQYHNMILELNASDDRGIDVVRQQIQ----------------DFASTQSFSFGV 138 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l--~~~~~~~~~~~~~~~~~~~~~~~~~~i~----------------~~~~~~~~~~~~ 138 (364)
+++.|.||||||.++-.+++.+ ...+....++..|..- ...++..+. .+.......-..
T Consensus 4 ~~I~G~aGTGKTvla~~l~~~l~~~~~~~~~~~l~~n~~l---~~~l~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 80 (352)
T PF09848_consen 4 ILITGGAGTGKTVLALNLAKELQNSEEGKKVLYLCGNHPL---RNKLREQLAKKYNPKLKKSDFRKPTSFINNYSESDKE 80 (352)
T ss_pred EEEEecCCcCHHHHHHHHHHHhhccccCCceEEEEecchH---HHHHHHHHhhhcccchhhhhhhhhHHHHhhccccccc
Confidence 6999999999999999999998 4444444444444322 111222221 111111100011
Q ss_pred ccceEEEEEeCCCCCCHH--------HHHHHHHHHHH
Q 017884 139 KASVKLVLLDEADAMTKD--------AQFALRRVIEK 167 (364)
Q Consensus 139 ~~~~~viiiDe~~~l~~~--------~~~~L~~~le~ 167 (364)
.....+|||||+|.+... ..+.|..++..
T Consensus 81 ~~~~DviivDEAqrl~~~~~~~~~~~~~~~L~~i~~~ 117 (352)
T PF09848_consen 81 KNKYDVIIVDEAQRLRTKGDQYNNFSEPNQLDEIIKR 117 (352)
T ss_pred CCcCCEEEEehhHhhhhccccccccccHHHHHHHHhc
Confidence 125789999999999872 24566677766
No 311
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=97.76 E-value=0.00016 Score=58.26 Aligned_cols=103 Identities=17% Similarity=0.212 Sum_probs=61.8
Q ss_pred EEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCC-CCC--------------------------hHHHHHHHHH-H
Q 017884 77 LLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASD-DRG--------------------------IDVVRQQIQD-F 128 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~-~~~--------------------------~~~~~~~i~~-~ 128 (364)
+.+|+++|.|||++|-.++-+..+.+....++.|--.. ..+ .......... +
T Consensus 5 i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQFlKg~~~~gE~~~l~~l~~v~~~~~g~~~~~~~~~~~~~~~~a~~~~ 84 (159)
T cd00561 5 IQVYTGNGKGKTTAALGLALRALGHGYRVGVVQFLKGGWKYGELKALERLPNIEIHRMGRGFFWTTENDEEDIAAAAEGW 84 (159)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEEeCCCCccCHHHHHHhCCCcEEEECCCCCccCCCChHHHHHHHHHHH
Confidence 67888899999999999998877666655554442211 000 0110001100 1
Q ss_pred HhcCccccCCccceEEEEEeCCCCCCH---HHHHHHHHHHHHhccCccEEEEeecc
Q 017884 129 ASTQSFSFGVKASVKLVLLDEADAMTK---DAQFALRRVIEKYTKNTRFALICNQV 181 (364)
Q Consensus 129 ~~~~~~~~~~~~~~~viiiDe~~~l~~---~~~~~L~~~le~~~~~~~~Il~~~~~ 181 (364)
...... -..+.+.+||+||+-...+ -..+.++++++..|.++.+|+++...
T Consensus 85 ~~a~~~--~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~ 138 (159)
T cd00561 85 AFAKEA--IASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNA 138 (159)
T ss_pred HHHHHH--HhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCC
Confidence 000000 0112588999999855522 13567888999999999999999654
No 312
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=97.74 E-value=6.9e-05 Score=63.94 Aligned_cols=20 Identities=60% Similarity=0.918 Sum_probs=18.5
Q ss_pred EEEeCCCCccHHHHHHHHHH
Q 017884 77 LLLYGPPGTGKTSTILAVAR 96 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~ 96 (364)
++|||+||+|||++|+.++.
T Consensus 15 ~liyG~~G~GKtt~a~~~~~ 34 (220)
T TIGR01618 15 YLIYGKPGTGKTSTIKYLPG 34 (220)
T ss_pred EEEECCCCCCHHHHHHhcCC
Confidence 89999999999999999863
No 313
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.73 E-value=4.5e-05 Score=73.06 Aligned_cols=52 Identities=19% Similarity=0.248 Sum_probs=42.0
Q ss_pred CCCCCcchhccHHHHHHHHHHHh----cC--CCCcEEEeCCCCccHHHHHHHHHHHHc
Q 017884 48 RPQSLADVAAHRDIVDTIDRLTS----EN--RLPHLLLYGPPGTGKTSTILAVARKLY 99 (364)
Q Consensus 48 ~p~~~~~~vg~~~~~~~l~~~~~----~~--~~~~lll~G~~G~GKt~la~~l~~~l~ 99 (364)
+...|+++.|.++++.++...+. +. +.+.++|.||||+|||++++.+++.+.
T Consensus 71 ry~fF~d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le 128 (644)
T PRK15455 71 RYPAFEEFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLME 128 (644)
T ss_pred cccchhcccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHH
Confidence 34568999999999998888772 22 223379999999999999999999874
No 314
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=97.72 E-value=0.0021 Score=58.26 Aligned_cols=48 Identities=19% Similarity=0.075 Sum_probs=38.3
Q ss_pred EEEecCCChHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHH
Q 017884 194 RFRFAPLEPVHVTERLKHVIEAEGL---DVTEGGLAALVRLCNGDMRKALN 241 (364)
Q Consensus 194 ~i~~~~~~~~~~~~~l~~~~~~~~~---~i~~~~~~~l~~~~~g~~r~a~~ 241 (364)
.+++++++.+|++.++..+....-+ ..++...+.+.-.++||++.+..
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~el~k 308 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPRELEK 308 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHHhcc
Confidence 7899999999999999988765433 34566778888888999998753
No 315
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.69 E-value=0.00054 Score=63.71 Aligned_cols=99 Identities=22% Similarity=0.341 Sum_probs=54.9
Q ss_pred EEEeCCCCccHHHHHHHHHHHHcC----CCCCCcEEEEeCCCCCChHHHHHHHHHHHhcCcccc-------------CCc
Q 017884 77 LLLYGPPGTGKTSTILAVARKLYG----AQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSF-------------GVK 139 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l~~----~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-------------~~~ 139 (364)
++|+||+|+||||++..++..+.. .+....++..++.. ..... .+..++.....++ ...
T Consensus 177 i~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R---~aa~e-QL~~~a~~lgvpv~~~~~~~~l~~~L~~~ 252 (388)
T PRK12723 177 FILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYR---IGAKK-QIQTYGDIMGIPVKAIESFKDLKEEITQS 252 (388)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCcc---HHHHH-HHHHHhhcCCcceEeeCcHHHHHHHHHHh
Confidence 799999999999999999987642 22333333333221 11111 1333333211110 011
Q ss_pred cceEEEEEeCCCCCCHH--HHHHHHHHHHHhcc--CccEEEEee
Q 017884 140 ASVKLVLLDEADAMTKD--AQFALRRVIEKYTK--NTRFALICN 179 (364)
Q Consensus 140 ~~~~viiiDe~~~l~~~--~~~~L~~~le~~~~--~~~~Il~~~ 179 (364)
.++.+|+||.+..+..+ ....+..+++.... .+.+|+.++
T Consensus 253 ~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat 296 (388)
T PRK12723 253 KDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSST 296 (388)
T ss_pred CCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCC
Confidence 25789999999988743 23566666665432 344555543
No 316
>KOG0479 consensus DNA replication licensing factor, MCM3 component [Replication, recombination and repair]
Probab=97.69 E-value=0.00018 Score=68.06 Aligned_cols=141 Identities=18% Similarity=0.180 Sum_probs=89.2
Q ss_pred hhhccCCCCCcchhccHHHHHHHHHHHhcCC------CC------cEEEeCCCCccHHHHHHHHHHHHc----CCCCCCc
Q 017884 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENR------LP------HLLLYGPPGTGKTSTILAVARKLY----GAQYHNM 106 (364)
Q Consensus 43 ~~~~~~p~~~~~~vg~~~~~~~l~~~~~~~~------~~------~lll~G~~G~GKt~la~~l~~~l~----~~~~~~~ 106 (364)
+.....|. +.||+.+++.+.-++-+|. .. ++++.|.|.+.|+.+.+.+.+... ..+.+..
T Consensus 295 La~SLAPS----I~GH~~vKkAillLLlGGvEk~L~NGshlRGDINiLlvGDPSvAKSQLLRyVLntAplAI~TTGRGSS 370 (818)
T KOG0479|consen 295 LARSLAPS----IYGHDYVKKAILLLLLGGVEKNLENGSHLRGDINILLVGDPSVAKSQLLRYVLNTAPLAIATTGRGSS 370 (818)
T ss_pred HhhccCcc----cccHHHHHHHHHHHHhccceeccCCCceeccceeEEEecCchHHHHHHHHHHHhcccccccccCCCCC
Confidence 34445554 7899999998877765441 11 389999999999999999987642 1122222
Q ss_pred EEEEeCCCCCChHHHHHHHHHHHhcCccccCCccceEEEEEeCCCCCCHHHHHHHHHHHHHh-------------ccCcc
Q 017884 107 ILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKY-------------TKNTR 173 (364)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~-------------~~~~~ 173 (364)
.+-+++.-....+.-...++.-+ +-++ +++||.|||+|.|+.-..-++-+.||.. ...|.
T Consensus 371 GVGLTAAVTtD~eTGERRLEAGA----MVLA---DRGVVCIDEFDKMsDiDRvAIHEVMEQqtVTIaKAGIHasLNARCS 443 (818)
T KOG0479|consen 371 GVGLTAAVTTDQETGERRLEAGA----MVLA---DRGVVCIDEFDKMSDIDRVAIHEVMEQQTVTIAKAGIHASLNARCS 443 (818)
T ss_pred CccceeEEeeccccchhhhhcCc----eEEc---cCceEEehhcccccchhHHHHHHHHhcceEEeEeccchhhhcccee
Confidence 22222211111111112222211 1123 5889999999999998899999999963 35677
Q ss_pred EEEEeeccc-------------cCchhhhccceE
Q 017884 174 FALICNQVN-------------KIIPALQSRCTR 194 (364)
Q Consensus 174 ~Il~~~~~~-------------~l~~~l~sr~~~ 194 (364)
++.++|+.. .++..|.|||..
T Consensus 444 VlAAANPvyG~Yd~~k~P~eNIgLpDSLLSRFDL 477 (818)
T KOG0479|consen 444 VLAAANPVYGQYDQSKTPMENIGLPDSLLSRFDL 477 (818)
T ss_pred eeeecCccccccCCCCChhhccCCcHHHHhhhcE
Confidence 888877543 467788999844
No 317
>PTZ00202 tuzin; Provisional
Probab=97.66 E-value=0.0024 Score=59.48 Aligned_cols=51 Identities=18% Similarity=0.256 Sum_probs=42.6
Q ss_pred CCCCCcchhccHHHHHHHHHHHhcCCC--Cc-EEEeCCCCccHHHHHHHHHHHH
Q 017884 48 RPQSLADVAAHRDIVDTIDRLTSENRL--PH-LLLYGPPGTGKTSTILAVARKL 98 (364)
Q Consensus 48 ~p~~~~~~vg~~~~~~~l~~~~~~~~~--~~-lll~G~~G~GKt~la~~l~~~l 98 (364)
-|....+++|++.....|...+..... +. +.|.|++|+|||++++.+...+
T Consensus 257 lPa~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l 310 (550)
T PTZ00202 257 APAVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKE 310 (550)
T ss_pred CCCCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcC
Confidence 456677899999999999999975433 32 5999999999999999999876
No 318
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.66 E-value=0.00037 Score=58.74 Aligned_cols=123 Identities=19% Similarity=0.285 Sum_probs=63.2
Q ss_pred EEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCCCChHHHHHHHHHHHhcCcccc---C----------------
Q 017884 77 LLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSF---G---------------- 137 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~---~---------------- 137 (364)
++|.||+|+||||++-.+|..+...+....++..+.......++ ++.++.....++ .
T Consensus 4 i~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQ----L~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~ 79 (196)
T PF00448_consen 4 IALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQ----LKTYAEILGVPFYVARTESDPAEIAREALEKF 79 (196)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHH----HHHHHHHHTEEEEESSTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHH----HHHHHHHhccccchhhcchhhHHHHHHHHHHH
Confidence 69999999999999999998876554444444443332212222 222222211110 0
Q ss_pred CccceEEEEEeCCCCCCH--HHHHHHHHHHHHhc-cCccEEEEeeccccCchhhhcc-----ceEEEecCCChH
Q 017884 138 VKASVKLVLLDEADAMTK--DAQFALRRVIEKYT-KNTRFALICNQVNKIIPALQSR-----CTRFRFAPLEPV 203 (364)
Q Consensus 138 ~~~~~~viiiDe~~~l~~--~~~~~L~~~le~~~-~~~~~Il~~~~~~~l~~~l~sr-----~~~i~~~~~~~~ 203 (364)
...+..+|+||-+..... +....+.++++... ..+.+|+.++........+..+ ..-+-|..+++.
T Consensus 80 ~~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~~~~~~~~~~lIlTKlDet 153 (196)
T PF00448_consen 80 RKKGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQALAFYEAFGIDGLILTKLDET 153 (196)
T ss_dssp HHTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHHHHHHSSTCEEEEESTTSS
T ss_pred hhcCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHHHHhhcccCceEEEEeecCC
Confidence 001256999998877763 34566767666653 3344555543322222222221 133556666664
No 319
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=97.66 E-value=0.00043 Score=69.95 Aligned_cols=114 Identities=18% Similarity=0.220 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHhcCCCCcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCCCChHHHHH-------HHHHHHhc
Q 017884 59 RDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQ-------QIQDFAST 131 (364)
Q Consensus 59 ~~~~~~l~~~~~~~~~~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-------~i~~~~~~ 131 (364)
+.....+...... +.+++.|+||||||++++++...+...+.... +.+-++.......+.+ .+..+...
T Consensus 326 ~~Q~~Ai~~~~~~---~~~iitGgpGTGKTt~l~~i~~~~~~~~~~~~-v~l~ApTg~AA~~L~e~~g~~a~Tih~lL~~ 401 (720)
T TIGR01448 326 EEQKQALDTAIQH---KVVILTGGPGTGKTTITRAIIELAEELGGLLP-VGLAAPTGRAAKRLGEVTGLTASTIHRLLGY 401 (720)
T ss_pred HHHHHHHHHHHhC---CeEEEECCCCCCHHHHHHHHHHHHHHcCCCce-EEEEeCchHHHHHHHHhcCCccccHHHHhhc
Confidence 4444455544322 34799999999999999999888754431122 2222222111111111 12222211
Q ss_pred Cccc--c---CCccceEEEEEeCCCCCCHHHHHHHHHHHHHhccCccEEEEee
Q 017884 132 QSFS--F---GVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICN 179 (364)
Q Consensus 132 ~~~~--~---~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~ 179 (364)
.+.. . .......+|||||+..+.......|++. .+..+++|++.+
T Consensus 402 ~~~~~~~~~~~~~~~~~llIvDEaSMvd~~~~~~Ll~~---~~~~~rlilvGD 451 (720)
T TIGR01448 402 GPDTFRHNHLEDPIDCDLLIVDESSMMDTWLALSLLAA---LPDHARLLLVGD 451 (720)
T ss_pred cCCccchhhhhccccCCEEEEeccccCCHHHHHHHHHh---CCCCCEEEEECc
Confidence 1100 0 0001467999999999988777666654 456789999985
No 320
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.65 E-value=0.00018 Score=59.52 Aligned_cols=31 Identities=32% Similarity=0.551 Sum_probs=26.5
Q ss_pred CcEEEeCCCCccHHHHHHHHHHHHcCCCCCC
Q 017884 75 PHLLLYGPPGTGKTSTILAVARKLYGAQYHN 105 (364)
Q Consensus 75 ~~lll~G~~G~GKt~la~~l~~~l~~~~~~~ 105 (364)
|-++|+|+||+|||++++.+++.+....+..
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~i~~v 32 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQEIWRV 32 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHhhhhc
Confidence 5589999999999999999999997665443
No 321
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=97.64 E-value=0.00048 Score=69.93 Aligned_cols=114 Identities=13% Similarity=0.238 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHhcCCCCcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCCCChHHHHH-------HHHHHHhc
Q 017884 59 RDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQ-------QIQDFAST 131 (364)
Q Consensus 59 ~~~~~~l~~~~~~~~~~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-------~i~~~~~~ 131 (364)
+.....+...+... ..++|.|++|+|||++++++...+...+. .+.-+..+. .....+.+ .+..+...
T Consensus 355 ~~Q~~Av~~i~~s~--~~~il~G~aGTGKTtll~~i~~~~~~~g~--~V~~~ApTg-~Aa~~L~~~~g~~a~Ti~~~~~~ 429 (744)
T TIGR02768 355 EEQYEAVRHVTGSG--DIAVVVGRAGTGKSTMLKAAREAWEAAGY--RVIGAALSG-KAAEGLQAESGIESRTLASLEYA 429 (744)
T ss_pred HHHHHHHHHHhcCC--CEEEEEecCCCCHHHHHHHHHHHHHhCCC--eEEEEeCcH-HHHHHHHhccCCceeeHHHHHhh
Confidence 44555555555432 34799999999999999999887654443 233222111 10011110 01111110
Q ss_pred CccccCCccceEEEEEeCCCCCCHHHHHHHHHHHHHhccCccEEEEee
Q 017884 132 QSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICN 179 (364)
Q Consensus 132 ~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~ 179 (364)
............+|||||+..+.......|+..... ..+++||+++
T Consensus 430 ~~~~~~~~~~~~llIvDEasMv~~~~~~~Ll~~~~~--~~~kliLVGD 475 (744)
T TIGR02768 430 WANGRDLLSDKDVLVIDEAGMVGSRQMARVLKEAEE--AGAKVVLVGD 475 (744)
T ss_pred hccCcccCCCCcEEEEECcccCCHHHHHHHHHHHHh--cCCEEEEECC
Confidence 000001112478999999999998777777665443 4688999985
No 322
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=97.61 E-value=0.00055 Score=60.57 Aligned_cols=35 Identities=34% Similarity=0.523 Sum_probs=28.2
Q ss_pred HHHHHhcCCCCcEEEeCCCCccHHHHHHHHHHHHc
Q 017884 65 IDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLY 99 (364)
Q Consensus 65 l~~~~~~~~~~~lll~G~~G~GKt~la~~l~~~l~ 99 (364)
+......+...++++.||+|+||||+.+.++..+.
T Consensus 102 l~~l~~~~~~~~~~i~g~~g~GKttl~~~l~~~~~ 136 (270)
T TIGR02858 102 LPYLVRNNRVLNTLIISPPQCGKTTLLRDLARILS 136 (270)
T ss_pred HHHHHhCCCeeEEEEEcCCCCCHHHHHHHHhCccC
Confidence 33444556567899999999999999999998874
No 323
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=97.60 E-value=0.00025 Score=69.65 Aligned_cols=102 Identities=20% Similarity=0.335 Sum_probs=57.9
Q ss_pred cEEEeCCCCccHHHHHHHHHHHHcCCCCC--CcEEEEeCCCCCChHHHHHHHHH------------------------HH
Q 017884 76 HLLLYGPPGTGKTSTILAVARKLYGAQYH--NMILELNASDDRGIDVVRQQIQD------------------------FA 129 (364)
Q Consensus 76 ~lll~G~~G~GKt~la~~l~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~------------------------~~ 129 (364)
..+|.|+||||||+++..+...+...... ..-+-+.+.+......+.+.+.. +.
T Consensus 162 ~~vitGgpGTGKTt~v~~ll~~l~~~~~~~~~~~I~l~APTGkAA~rL~e~~~~~~~~l~~~~~~~~~~~~~a~TiHrlL 241 (586)
T TIGR01447 162 FSLITGGPGTGKTTTVARLLLALVKQSPKQGKLRIALAAPTGKAAARLAESLRKAVKNLAAAEALIAALPSEAVTIHRLL 241 (586)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHhccccCCCcEEEECCcHHHHHHHHHHHHhhhcccccchhhhhccccccchhhhhh
Confidence 47999999999999999988776432211 11133333332222222222211 11
Q ss_pred hcCc----ccc--CCccceEEEEEeCCCCCCHHHHHHHHHHHHHhccCccEEEEeec
Q 017884 130 STQS----FSF--GVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQ 180 (364)
Q Consensus 130 ~~~~----~~~--~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~ 180 (364)
...+ +.+ ...-...+|||||+-.+.......|++.+ +.++++|++++.
T Consensus 242 g~~~~~~~~~~~~~~~l~~dvlIiDEaSMvd~~l~~~ll~al---~~~~rlIlvGD~ 295 (586)
T TIGR01447 242 GIKPDTKRFRHHERNPLPLDVLVVDEASMVDLPLMAKLLKAL---PPNTKLILLGDK 295 (586)
T ss_pred cccCCcchhhhcccCCCcccEEEEcccccCCHHHHHHHHHhc---CCCCEEEEECCh
Confidence 1111 000 00013569999999999877666665544 568999999853
No 324
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.60 E-value=0.00074 Score=54.16 Aligned_cols=23 Identities=30% Similarity=0.592 Sum_probs=21.1
Q ss_pred cEEEeCCCCccHHHHHHHHHHHH
Q 017884 76 HLLLYGPPGTGKTSTILAVARKL 98 (364)
Q Consensus 76 ~lll~G~~G~GKt~la~~l~~~l 98 (364)
.+.+.||+|+||+++.+.++..+
T Consensus 31 ~iaitGPSG~GKStllk~va~Li 53 (223)
T COG4619 31 FIAITGPSGCGKSTLLKIVASLI 53 (223)
T ss_pred eEEEeCCCCccHHHHHHHHHhcc
Confidence 37999999999999999999876
No 325
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=97.59 E-value=0.00069 Score=57.79 Aligned_cols=51 Identities=22% Similarity=0.352 Sum_probs=39.3
Q ss_pred ceEEEEEeC-CCCCCHHHHHHHHHHHHHhc---cCccEEEEeeccccCchhhhcc
Q 017884 141 SVKLVLLDE-ADAMTKDAQFALRRVIEKYT---KNTRFALICNQVNKIIPALQSR 191 (364)
Q Consensus 141 ~~~viiiDe-~~~l~~~~~~~L~~~le~~~---~~~~~Il~~~~~~~l~~~l~sr 191 (364)
.+.++|+|| ++.|.....+.|++.+++.. ..+.+|++|.....+++-+..+
T Consensus 189 ~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~~th~ 243 (257)
T COG1119 189 DPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHR 243 (257)
T ss_pred CCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhcccccceE
Confidence 688999999 56677777888888888754 3566899999888888766544
No 326
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.56 E-value=0.00056 Score=58.43 Aligned_cols=35 Identities=26% Similarity=0.533 Sum_probs=26.9
Q ss_pred EEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCC
Q 017884 77 LLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNAS 113 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~ 113 (364)
+.++||||+|||+++..++......+ ..++.++..
T Consensus 15 ~~i~G~~GsGKT~l~~~~~~~~~~~g--~~v~yi~~e 49 (209)
T TIGR02237 15 TQIYGPPGSGKTNICMILAVNAARQG--KKVVYIDTE 49 (209)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhCC--CeEEEEECC
Confidence 69999999999999999988765443 345555554
No 327
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=97.54 E-value=0.00031 Score=69.27 Aligned_cols=102 Identities=17% Similarity=0.263 Sum_probs=58.8
Q ss_pred cEEEeCCCCccHHHHHHHHHHHHcCCC-CCCcEEEEeCCCCCChHHHHHH------------------------HHHHHh
Q 017884 76 HLLLYGPPGTGKTSTILAVARKLYGAQ-YHNMILELNASDDRGIDVVRQQ------------------------IQDFAS 130 (364)
Q Consensus 76 ~lll~G~~G~GKt~la~~l~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~------------------------i~~~~~ 130 (364)
..+|.|+||||||+++..+...+.... .....+.+.+.+......+.+. +..+..
T Consensus 169 ~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~~~~~~~~~~~~~~~~~~~a~TiHrlLg 248 (615)
T PRK10875 169 ISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEEASTLHRLLG 248 (615)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHHhhhhccccchhhhhcCCCchHHHHHHhC
Confidence 379999999999999999888764321 1112233433332222222222 222222
Q ss_pred cCcc----ccCCc--cceEEEEEeCCCCCCHHHHHHHHHHHHHhccCccEEEEeec
Q 017884 131 TQSF----SFGVK--ASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQ 180 (364)
Q Consensus 131 ~~~~----~~~~~--~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~ 180 (364)
..+. .+... -...++||||+..+.-.....|++.+ ++++++|++++.
T Consensus 249 ~~~~~~~~~~~~~~~l~~dvlIvDEaSMvd~~lm~~ll~al---~~~~rlIlvGD~ 301 (615)
T PRK10875 249 AQPGSQRLRYHAGNPLHLDVLVVDEASMVDLPMMARLIDAL---PPHARVIFLGDR 301 (615)
T ss_pred cCCCccchhhccccCCCCCeEEEChHhcccHHHHHHHHHhc---ccCCEEEEecch
Confidence 1111 00000 12469999999999877666666654 578999999863
No 328
>PF00519 PPV_E1_C: Papillomavirus helicase; InterPro: IPR001177 Papillomaviruses are a large family of DNA tumour viruses which give rise to warts in their host species. The helicase E1 protein is an ATP-dependent DNA helicase required for initiation of viral DNA replication []. It forms a complex with the viral E2 protein, which is a site-specific DNA-binding transcriptional activator. The E1-E2 complex binds to the replication origin which contains binding sites for both proteins []. The E1 protein is a 70 kDa polypeptide with a central DNA-binding domain and a C-terminal ATPase/helicase domain. It binds specific 18 bp DNA sequences at the origin of replication, melts the DNA duplex and functions as a 3' to 5' helicase []. In addition to E2 it also interacts with DNA polymerase alpha and replication protein A to effect DNA replication. The DNA-binding domain forms a five-stranded antiparallel beta sheet bordered by four loosely packed alpha helices on one side and two tightly packed helices on the other []. Two structural modules within this domain, an extended loop and a helix, contain conserved residues and are critical for DNA binding. In solution E1 is a monomer, but binds DNA as a dimer. Recruitment of more E1 subunits to the complex leads to melting of the origin and ultimately to the formation of an E1 hexamer with helicase activity []. The entry represents the C-terminal region of E1, containing both the DNA-binding and ATPase/helical domains.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1TUE_K 1R9W_A 2V9P_B 2GXA_I 1KSX_J 1KSY_A 1F08_B.
Probab=97.53 E-value=0.00096 Score=60.76 Aligned_cols=115 Identities=23% Similarity=0.309 Sum_probs=65.7
Q ss_pred HHHHHHHHHHhcCCCCc-EEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEE-eCCCCCChHHHHHHHHHHHhcCccccC
Q 017884 60 DIVDTIDRLTSENRLPH-LLLYGPPGTGKTSTILAVARKLYGAQYHNMILEL-NASDDRGIDVVRQQIQDFASTQSFSFG 137 (364)
Q Consensus 60 ~~~~~l~~~~~~~~~~~-lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~ 137 (364)
..+..++.++++-...+ ++|||||++|||.+...+.+-+. ..++.+ |.... . - +.
T Consensus 247 ~Fl~~lk~~Lkg~PKKnClvi~GPPdTGKS~F~~SLi~Fl~-----GkViSf~Ns~Sh-F------------W-----Lq 303 (432)
T PF00519_consen 247 SFLIALKQFLKGIPKKNCLVIYGPPDTGKSMFCMSLIKFLK-----GKVISFVNSKSH-F------------W-----LQ 303 (432)
T ss_dssp HHHHHHHHHHHTBTTSSEEEEESSCCCSHHHHHHHHHHHHT-----SEEE-GGGTTSC-G------------G-----GG
T ss_pred HHHHHHHHHHhCCCcccEEEEECCCCCchhHHHHHHHHHhC-----CEEEEecCCCCc-c------------c-----cc
Confidence 34457777787644444 89999999999999999999983 233332 22111 1 1 11
Q ss_pred CccceEEEEEeCCCCCCHHHHHH----HHHHHHHhc-------------cCccEEEEeecc---ccCchhhhccceEEEe
Q 017884 138 VKASVKLVLLDEADAMTKDAQFA----LRRVIEKYT-------------KNTRFALICNQV---NKIIPALQSRCTRFRF 197 (364)
Q Consensus 138 ~~~~~~viiiDe~~~l~~~~~~~----L~~~le~~~-------------~~~~~Il~~~~~---~~l~~~l~sr~~~i~~ 197 (364)
+..+.++.+|||+ +....+. |+..++..+ .-..++++||.. +.-..-|.||...++|
T Consensus 304 PL~d~Ki~llDDA---T~~cW~Y~D~ylRNaLDGN~vsiD~KHkap~Qik~PPLlITsN~dv~~~~~~~YLhSRi~~f~F 380 (432)
T PF00519_consen 304 PLADAKIALLDDA---TYPCWDYIDTYLRNALDGNPVSIDCKHKAPVQIKCPPLLITSNIDVKKDDRWKYLHSRITCFEF 380 (432)
T ss_dssp GGCT-SSEEEEEE----HHHHHHHHHHTHHHHCTSEEEEEESSSEEEEEE---EEEEESS-TTTSCCCHHHCTTEEEEE-
T ss_pred chhcCcEEEEcCC---cccHHHHHHHHHHhccCCCeeeeeccCCCceEeecCceEEecCCCCCcchhhhhhhheEEEEEc
Confidence 1225789999998 4444444 444444322 123456666532 2335678899988888
Q ss_pred cCC
Q 017884 198 APL 200 (364)
Q Consensus 198 ~~~ 200 (364)
+.+
T Consensus 381 ~n~ 383 (432)
T PF00519_consen 381 PNP 383 (432)
T ss_dssp -S-
T ss_pred CCc
Confidence 654
No 329
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=97.52 E-value=0.00054 Score=63.78 Aligned_cols=43 Identities=28% Similarity=0.407 Sum_probs=32.5
Q ss_pred cHHHHHHHHHHHhcCCCCcEEEeCCCCccHHHHHHHHHHHHcC
Q 017884 58 HRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYG 100 (364)
Q Consensus 58 ~~~~~~~l~~~~~~~~~~~lll~G~~G~GKt~la~~l~~~l~~ 100 (364)
|..+...+.+.+......++++.|+.|+|||++++++...+..
T Consensus 6 Q~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~~~~~~ 48 (364)
T PF05970_consen 6 QRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAIIDYLRS 48 (364)
T ss_pred HHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHHHHhcc
Confidence 4455555555565554455899999999999999999988754
No 330
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=97.51 E-value=0.00032 Score=55.10 Aligned_cols=25 Identities=36% Similarity=0.502 Sum_probs=21.8
Q ss_pred cEEEeCCCCccHHHHHHHHHHHHcC
Q 017884 76 HLLLYGPPGTGKTSTILAVARKLYG 100 (364)
Q Consensus 76 ~lll~G~~G~GKt~la~~l~~~l~~ 100 (364)
+++++||+|+|||+++..++..+..
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~~~ 26 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILELLD 26 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHHHh
Confidence 5899999999999999888887754
No 331
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.51 E-value=0.00052 Score=57.42 Aligned_cols=26 Identities=38% Similarity=0.415 Sum_probs=21.8
Q ss_pred EEEeCCCCccHHHHHHHHHHHHcCCC
Q 017884 77 LLLYGPPGTGKTSTILAVARKLYGAQ 102 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l~~~~ 102 (364)
++++||||+|||+++..++......+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g 27 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARG 27 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCC
Confidence 68999999999999999888765443
No 332
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.50 E-value=0.00083 Score=54.95 Aligned_cols=98 Identities=19% Similarity=0.269 Sum_probs=56.1
Q ss_pred CcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCCCC--h-HHH--------------HHHHHHHHhcCccccC
Q 017884 75 PHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRG--I-DVV--------------RQQIQDFASTQSFSFG 137 (364)
Q Consensus 75 ~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~--~-~~~--------------~~~i~~~~~~~~~~~~ 137 (364)
..+.|.||+|+||||+.+.++..+.... --+.++...... . +.. +..+. .+.. +.
T Consensus 27 e~~~l~G~nGsGKSTLl~~i~G~~~~~~---G~v~~~g~~~~~~~~~~~~~~~i~~~~qLS~G~~qrl~-lara----l~ 98 (163)
T cd03216 27 EVHALLGENGAGKSTLMKILSGLYKPDS---GEILVDGKEVSFASPRDARRAGIAMVYQLSVGERQMVE-IARA----LA 98 (163)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCC---eEEEECCEECCcCCHHHHHhcCeEEEEecCHHHHHHHH-HHHH----Hh
Confidence 3489999999999999999987653211 112222211100 0 000 00000 1111 11
Q ss_pred CccceEEEEEeCC-CCCCHHHHHHHHHHHHHhcc-CccEEEEeeccc
Q 017884 138 VKASVKLVLLDEA-DAMTKDAQFALRRVIEKYTK-NTRFALICNQVN 182 (364)
Q Consensus 138 ~~~~~~viiiDe~-~~l~~~~~~~L~~~le~~~~-~~~~Il~~~~~~ 182 (364)
.+++++++||. ..+.......+.+++.+... ...+|++++...
T Consensus 99 --~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~ 143 (163)
T cd03216 99 --RNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLD 143 (163)
T ss_pred --cCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 15789999996 45667778888888877643 445667776543
No 333
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.50 E-value=0.00012 Score=56.63 Aligned_cols=22 Identities=36% Similarity=0.853 Sum_probs=21.0
Q ss_pred EEEeCCCCccHHHHHHHHHHHH
Q 017884 77 LLLYGPPGTGKTSTILAVARKL 98 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l 98 (364)
++|.|+||+||||+++.+++.+
T Consensus 2 I~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999997
No 334
>PRK14974 cell division protein FtsY; Provisional
Probab=97.49 E-value=0.001 Score=60.76 Aligned_cols=27 Identities=37% Similarity=0.520 Sum_probs=23.1
Q ss_pred EEEeCCCCccHHHHHHHHHHHHcCCCC
Q 017884 77 LLLYGPPGTGKTSTILAVARKLYGAQY 103 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l~~~~~ 103 (364)
++|.|++|+||||++..++..+...+.
T Consensus 143 i~~~G~~GvGKTTtiakLA~~l~~~g~ 169 (336)
T PRK14974 143 IVFVGVNGTGKTTTIAKLAYYLKKNGF 169 (336)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCC
Confidence 799999999999999999988755443
No 335
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.49 E-value=0.0018 Score=66.60 Aligned_cols=183 Identities=15% Similarity=0.124 Sum_probs=99.8
Q ss_pred hccHHHHHHHHHHHhcCCCCcEEEeCCCCccHHHHHHHHHHHHcCCCCCCc-EEEEeCCCCCChHHHHHHHHHHHhcCcc
Q 017884 56 AAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNM-ILELNASDDRGIDVVRQQIQDFASTQSF 134 (364)
Q Consensus 56 vg~~~~~~~l~~~~~~~~~~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 134 (364)
||++..++.+...+-......+-+||..|+||||+++.+.+.......++. ++.+..+.......+...|-........
T Consensus 161 VG~e~~~~kl~~~L~~d~~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~~~~ 240 (889)
T KOG4658|consen 161 VGLETMLEKLWNRLMEDDVGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERLGLLDE 240 (889)
T ss_pred ccHHHHHHHHHHHhccCCCCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHHhccCCc
Confidence 999999999999988776666899999999999999999988642221222 2222222222222222222111100000
Q ss_pred ccCC--------------ccceEEEEEeCCCCCCHHHHHHHHHHHHHh-c---cCccEEEEeeccccCchhhhccceEEE
Q 017884 135 SFGV--------------KASVKLVLLDEADAMTKDAQFALRRVIEKY-T---KNTRFALICNQVNKIIPALQSRCTRFR 196 (364)
Q Consensus 135 ~~~~--------------~~~~~viiiDe~~~l~~~~~~~L~~~le~~-~---~~~~~Il~~~~~~~l~~~l~sr~~~i~ 196 (364)
.... ..++-++++||+=.=. . ++.+..+ | ..+.++|+|....--. ....+...++
T Consensus 241 ~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~~--d----w~~I~~~~p~~~~g~KvvlTTRs~~V~~-~~m~~~~~~~ 313 (889)
T KOG4658|consen 241 EWEDKEEDELASKLLNLLEGKRFLLVLDDIWEEV--D----WDKIGVPFPSRENGSKVVLTTRSEEVCG-RAMGVDYPIE 313 (889)
T ss_pred ccchhhHHHHHHHHHHHhccCceEEEEecccccc--c----HHhcCCCCCCccCCeEEEEEeccHhhhh-ccccCCcccc
Confidence 0000 0145699999872211 1 2222222 2 2377888886543211 1122245566
Q ss_pred ecCCChHHHHHHHHHHHHHcCC--CC-CHHHHHHHHHHcCCCHHHHHHHHHHH
Q 017884 197 FAPLEPVHVTERLKHVIEAEGL--DV-TEGGLAALVRLCNGDMRKALNILQST 246 (364)
Q Consensus 197 ~~~~~~~~~~~~l~~~~~~~~~--~i-~~~~~~~l~~~~~g~~r~a~~~l~~~ 246 (364)
...+++++.-..+++.+-.... .. -++....+++.|+| +--|++.+-..
T Consensus 314 v~~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~G-LPLAl~viG~~ 365 (889)
T KOG4658|consen 314 VECLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGG-LPLALNVLGGL 365 (889)
T ss_pred ccccCccccHHHHHHhhccccccccccHHHHHHHHHHHhCC-hHHHHHHHHHH
Confidence 6667777776666666532211 11 25667788888987 44555555443
No 336
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.46 E-value=0.0011 Score=57.43 Aligned_cols=47 Identities=26% Similarity=0.435 Sum_probs=32.2
Q ss_pred HHHHHhcCCCCc--EEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCC
Q 017884 65 IDRLTSENRLPH--LLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNAS 113 (364)
Q Consensus 65 l~~~~~~~~~~~--lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~ 113 (364)
|...+.+|-.+. ++++|+||+|||+++..++......+ ..++.++..
T Consensus 12 lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~--~~v~yi~~e 60 (225)
T PRK09361 12 LDELLGGGFERGTITQIYGPPGSGKTNICLQLAVEAAKNG--KKVIYIDTE 60 (225)
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCC--CeEEEEECC
Confidence 444555553333 69999999999999999998765443 344455544
No 337
>PRK14532 adenylate kinase; Provisional
Probab=97.45 E-value=0.0035 Score=52.55 Aligned_cols=23 Identities=30% Similarity=0.696 Sum_probs=21.3
Q ss_pred cEEEeCCCCccHHHHHHHHHHHH
Q 017884 76 HLLLYGPPGTGKTSTILAVARKL 98 (364)
Q Consensus 76 ~lll~G~~G~GKt~la~~l~~~l 98 (364)
++++.||||+||||+++.+++.+
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~ 24 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEER 24 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 47899999999999999999986
No 338
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.45 E-value=0.0017 Score=61.42 Aligned_cols=23 Identities=39% Similarity=0.667 Sum_probs=20.8
Q ss_pred EEEeCCCCccHHHHHHHHHHHHc
Q 017884 77 LLLYGPPGTGKTSTILAVARKLY 99 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l~ 99 (364)
++|.||+|+||||++..++..+.
T Consensus 224 i~~vGptGvGKTTt~~kLA~~~~ 246 (424)
T PRK05703 224 VALVGPTGVGKTTTLAKLAARYA 246 (424)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 79999999999999999988764
No 339
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=97.45 E-value=0.0012 Score=68.22 Aligned_cols=113 Identities=16% Similarity=0.200 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHhcCCCCcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCC--------CCChHHHHHHHHHHHh
Q 017884 59 RDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASD--------DRGIDVVRQQIQDFAS 130 (364)
Q Consensus 59 ~~~~~~l~~~~~~~~~~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~--------~~~~~~~~~~i~~~~~ 130 (364)
+.....+..++... ..++|.|++|+|||++++.+...+...++. ++-+..+. ..+.. -..+..+..
T Consensus 349 ~eQr~Av~~il~s~--~v~vv~G~AGTGKTT~l~~~~~~~e~~G~~--V~~~ApTGkAA~~L~e~tGi~--a~TI~sll~ 422 (988)
T PRK13889 349 GEQADALAHVTDGR--DLGVVVGYAGTGKSAMLGVAREAWEAAGYE--VRGAALSGIAAENLEGGSGIA--SRTIASLEH 422 (988)
T ss_pred HHHHHHHHHHhcCC--CeEEEEeCCCCCHHHHHHHHHHHHHHcCCe--EEEecCcHHHHHHHhhccCcc--hhhHHHHHh
Confidence 34444555555433 246899999999999998887766443332 22222111 00111 011222211
Q ss_pred cCccccCCccceEEEEEeCCCCCCHHHHHHHHHHHHHhccCccEEEEee
Q 017884 131 TQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICN 179 (364)
Q Consensus 131 ~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~ 179 (364)
.............+|||||+..+.......|++.... ..+++|++.+
T Consensus 423 ~~~~~~~~l~~~~vlIVDEASMv~~~~m~~LL~~a~~--~garvVLVGD 469 (988)
T PRK13889 423 GWGQGRDLLTSRDVLVIDEAGMVGTRQLERVLSHAAD--AGAKVVLVGD 469 (988)
T ss_pred hhcccccccccCcEEEEECcccCCHHHHHHHHHhhhh--CCCEEEEECC
Confidence 1000000011467999999999988877777766553 4688999985
No 340
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=97.42 E-value=0.00073 Score=59.46 Aligned_cols=25 Identities=36% Similarity=0.586 Sum_probs=22.3
Q ss_pred EEEeCCCCccHHHHHHHHHHHHcCC
Q 017884 77 LLLYGPPGTGKTSTILAVARKLYGA 101 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l~~~ 101 (364)
++|+|+||+||||+++.+++.+...
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~ 26 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEK 26 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 6899999999999999999988543
No 341
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.42 E-value=0.0044 Score=57.12 Aligned_cols=124 Identities=18% Similarity=0.288 Sum_probs=64.3
Q ss_pred EEEeCCCCccHHHHHHHHHHHHc--CCCCCCcEEEEeCCCCCChHHHHHHHHHHHhcCcccc-------------CCccc
Q 017884 77 LLLYGPPGTGKTSTILAVARKLY--GAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSF-------------GVKAS 141 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-------------~~~~~ 141 (364)
+.|.||+|+||||+.-.+|.... .......++..+.- .+.... .+..++..+..++ .....
T Consensus 206 i~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtY---RIGA~E-QLk~Ya~im~vp~~vv~~~~el~~ai~~l~~ 281 (407)
T COG1419 206 IALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTY---RIGAVE-QLKTYADIMGVPLEVVYSPKELAEAIEALRD 281 (407)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccc---hhhHHH-HHHHHHHHhCCceEEecCHHHHHHHHHHhhc
Confidence 79999999999988877777654 23333334443322 222221 1232322211110 00124
Q ss_pred eEEEEEeCCCCCCH--HHHHHHHHHHHHh-ccCccEEEEeeccccCchhhhccc-----eEEEecCCChHH
Q 017884 142 VKLVLLDEADAMTK--DAQFALRRVIEKY-TKNTRFALICNQVNKIIPALQSRC-----TRFRFAPLEPVH 204 (364)
Q Consensus 142 ~~viiiDe~~~l~~--~~~~~L~~~le~~-~~~~~~Il~~~~~~~l~~~l~sr~-----~~i~~~~~~~~~ 204 (364)
+.+|+||=+.+-.. .....|..+++.- +..+.+++.++...+-...+..++ .-+-|..+++..
T Consensus 282 ~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~~dlkei~~~f~~~~i~~~I~TKlDET~ 352 (407)
T COG1419 282 CDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKYEDLKEIIKQFSLFPIDGLIFTKLDETT 352 (407)
T ss_pred CCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcchHHHHHHHHHhccCCcceeEEEcccccC
Confidence 67888887766542 3345555555543 334556666655544444444432 235566666543
No 342
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=97.41 E-value=0.0025 Score=52.28 Aligned_cols=56 Identities=14% Similarity=0.296 Sum_probs=38.9
Q ss_pred ceEEEEEeCC-CCCCHHHHHHHHHHHHHhccCccEEEEeeccccCchhhhccceEEE
Q 017884 141 SVKLVLLDEA-DAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFR 196 (364)
Q Consensus 141 ~~~viiiDe~-~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~l~~~l~sr~~~i~ 196 (364)
.+.+++-||- .++.++....+++++++......-|++++....+....+.|+..++
T Consensus 155 ~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~ 211 (223)
T COG2884 155 QPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALE 211 (223)
T ss_pred CCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEe
Confidence 5789999995 6788888889999999877544433444344456666666665443
No 343
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.40 E-value=0.0029 Score=55.08 Aligned_cols=35 Identities=23% Similarity=0.207 Sum_probs=25.8
Q ss_pred HHHHHhcCCCCc--EEEeCCCCccHHHHHHHHHHHHc
Q 017884 65 IDRLTSENRLPH--LLLYGPPGTGKTSTILAVARKLY 99 (364)
Q Consensus 65 l~~~~~~~~~~~--lll~G~~G~GKt~la~~l~~~l~ 99 (364)
|...+.+|-++. ++++|+||+|||+++..++....
T Consensus 14 LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~ 50 (234)
T PRK06067 14 LDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGAL 50 (234)
T ss_pred HHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHHH
Confidence 444455553333 79999999999999999976643
No 344
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.40 E-value=0.00034 Score=55.72 Aligned_cols=22 Identities=41% Similarity=0.918 Sum_probs=20.6
Q ss_pred EEEeCCCCccHHHHHHHHHHHH
Q 017884 77 LLLYGPPGTGKTSTILAVARKL 98 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l 98 (364)
+++.|+||+||||+++.+++.+
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~ 23 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRL 23 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHHC
Confidence 6899999999999999999886
No 345
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.39 E-value=0.0011 Score=57.41 Aligned_cols=26 Identities=23% Similarity=0.263 Sum_probs=20.8
Q ss_pred EEEeCCCCccHHHHHHHHHHHHcCCC
Q 017884 77 LLLYGPPGTGKTSTILAVARKLYGAQ 102 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l~~~~ 102 (364)
+++.|++|+|||+++..++..+...+
T Consensus 27 ~~i~G~~G~GKTtl~~~~~~~~~~~g 52 (230)
T PRK08533 27 ILIEGDESTGKSILSQRLAYGFLQNG 52 (230)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhCC
Confidence 79999999999999877666654443
No 346
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.39 E-value=0.0011 Score=61.16 Aligned_cols=29 Identities=34% Similarity=0.576 Sum_probs=24.4
Q ss_pred EEEeCCCCccHHHHHHHHHHHHcCCCCCC
Q 017884 77 LLLYGPPGTGKTSTILAVARKLYGAQYHN 105 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l~~~~~~~ 105 (364)
++|.||+|+||||++..++..+...+...
T Consensus 244 I~LVGptGvGKTTTiaKLA~~L~~~GkkV 272 (436)
T PRK11889 244 IALIGPTGVGKTTTLAKMAWQFHGKKKTV 272 (436)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHcCCcE
Confidence 79999999999999999999886554433
No 347
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.39 E-value=0.0018 Score=53.55 Aligned_cols=97 Identities=18% Similarity=0.210 Sum_probs=54.5
Q ss_pred cEEEeCCCCccHHHHHHHHHHHHcCCCCCCc-----EEEEeCCC-CCChHHHHHHHHHHHhcCccccCCccceEEEEEeC
Q 017884 76 HLLLYGPPGTGKTSTILAVARKLYGAQYHNM-----ILELNASD-DRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDE 149 (364)
Q Consensus 76 ~lll~G~~G~GKt~la~~l~~~l~~~~~~~~-----~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe 149 (364)
.+.|.||.|+||||+++.++..+........ +..+.... ..+....+-.+.... .. ++.++++||
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~q~~~LSgGq~qrv~laral-------~~--~p~lllLDE 97 (177)
T cd03222 27 VIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQYIDLSGGELQRVAIAAAL-------LR--NATFYLFDE 97 (177)
T ss_pred EEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEEEEcccCCCCHHHHHHHHHHHHH-------hc--CCCEEEEEC
Confidence 4799999999999999999886532211110 11111100 111111111111111 11 478999999
Q ss_pred CC-CCCHHHHHHHHHHHHHhcc-C-ccEEEEeecc
Q 017884 150 AD-AMTKDAQFALRRVIEKYTK-N-TRFALICNQV 181 (364)
Q Consensus 150 ~~-~l~~~~~~~L~~~le~~~~-~-~~~Il~~~~~ 181 (364)
.. .+.......+.+.+.+... . ..+|++++..
T Consensus 98 Pts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~ 132 (177)
T cd03222 98 PSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDL 132 (177)
T ss_pred CcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCH
Confidence 64 5567777888888876532 2 4566777654
No 348
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.38 E-value=0.0016 Score=52.11 Aligned_cols=94 Identities=20% Similarity=0.307 Sum_probs=55.4
Q ss_pred CcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeC-------CCCCChHHHHHHHHHHHhcCccccCCccceEEEEE
Q 017884 75 PHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNA-------SDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLL 147 (364)
Q Consensus 75 ~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~-------~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~viii 147 (364)
..+.+.||+|+||||+++.++..+.... + -+.++. ....+....+-.+..... . ++.++++
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~~~~~-G--~i~~~~~~~i~~~~~lS~G~~~rv~laral~-------~--~p~illl 94 (144)
T cd03221 27 DRIGLVGRNGAGKSTLLKLIAGELEPDE-G--IVTWGSTVKIGYFEQLSGGEKMRLALAKLLL-------E--NPNLLLL 94 (144)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCCCCCc-e--EEEECCeEEEEEEccCCHHHHHHHHHHHHHh-------c--CCCEEEE
Confidence 3479999999999999999988753211 1 011111 001111111111222211 1 4789999
Q ss_pred eCC-CCCCHHHHHHHHHHHHHhccCccEEEEeeccc
Q 017884 148 DEA-DAMTKDAQFALRRVIEKYTKNTRFALICNQVN 182 (364)
Q Consensus 148 De~-~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~ 182 (364)
||. ..+.......+.+++.+. ...++++++...
T Consensus 95 DEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~ 128 (144)
T cd03221 95 DEPTNHLDLESIEALEEALKEY--PGTVILVSHDRY 128 (144)
T ss_pred eCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHH
Confidence 996 466777788888888876 245666765543
No 349
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins.
Probab=97.37 E-value=0.0019 Score=54.46 Aligned_cols=99 Identities=20% Similarity=0.293 Sum_probs=64.4
Q ss_pred EEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCCCChHHHHHHHHHHHhcCccccCCccceEEEEEeCCCCCCHH
Q 017884 77 LLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKD 156 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~ 156 (364)
++|.|+.|+|||++.+.|....+... +... ...+... ... +.-++.+||++.+.+.
T Consensus 55 lvl~G~QG~GKStf~~~L~~~~~~d~-------~~~~--~~kd~~~----~l~-----------~~~iveldEl~~~~k~ 110 (198)
T PF05272_consen 55 LVLVGKQGIGKSTFFRKLGPEYFSDS-------INDF--DDKDFLE----QLQ-----------GKWIVELDELDGLSKK 110 (198)
T ss_pred eeEecCCcccHHHHHHHHhHHhccCc-------cccC--CCcHHHH----HHH-----------HhHheeHHHHhhcchh
Confidence 69999999999999999966632211 1111 1112211 111 2569999999999988
Q ss_pred HHHHHHHHHHH---------------hccCccEEEEeeccccCch-hhhccceEEEecC
Q 017884 157 AQFALRRVIEK---------------YTKNTRFALICNQVNKIIP-ALQSRCTRFRFAP 199 (364)
Q Consensus 157 ~~~~L~~~le~---------------~~~~~~~Il~~~~~~~l~~-~l~sr~~~i~~~~ 199 (364)
..+.|..++.. .+..+.||.+||..+-+.. +=-+|+.++.+..
T Consensus 111 ~~~~lK~~iT~~~~~~R~pY~~~~~~~~R~~~figTtN~~~~L~D~TGnRRf~~v~v~~ 169 (198)
T PF05272_consen 111 DVEALKSFITRRTDTYRPPYGRDPEEFPRRAVFIGTTNDDDFLKDPTGNRRFWPVEVSK 169 (198)
T ss_pred hHHHHHHHhcccceeeecCCcCcceeeceeEEEEeccCCcceeeCCCCCeEEEEEEEcC
Confidence 88888888764 2455677888887654433 3345677777766
No 350
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=97.37 E-value=0.0012 Score=55.16 Aligned_cols=40 Identities=28% Similarity=0.399 Sum_probs=25.7
Q ss_pred eEEEEEeCCCCCCH-HHHHHHHHHHHHhccCccEEEEeecc
Q 017884 142 VKLVLLDEADAMTK-DAQFALRRVIEKYTKNTRFALICNQV 181 (364)
Q Consensus 142 ~~viiiDe~~~l~~-~~~~~L~~~le~~~~~~~~Il~~~~~ 181 (364)
..++||||+|.+.. .....+..++...+....+++.+..+
T Consensus 130 ~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~v~~saT~ 170 (201)
T smart00487 130 VDLVILDEAHRLLDGGFGDQLEKLLKLLPKNVQLLLLSATP 170 (201)
T ss_pred CCEEEEECHHHHhcCCcHHHHHHHHHhCCccceEEEEecCC
Confidence 45999999999986 44555555555444455555555444
No 351
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=97.37 E-value=0.0039 Score=51.92 Aligned_cols=22 Identities=23% Similarity=0.610 Sum_probs=20.7
Q ss_pred EEEeCCCCccHHHHHHHHHHHH
Q 017884 77 LLLYGPPGTGKTSTILAVARKL 98 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l 98 (364)
+++.|+||+||||+++.+++.+
T Consensus 2 i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 6899999999999999999986
No 352
>TIGR01613 primase_Cterm phage/plasmid primase, P4 family, C-terminal domain. This model represents a clade within a larger family of proteins from viruses of bacteria and animals. Members of this family are found in phage and plasmids of bacteria and archaea only. The model describes a domain of about 300 residues, found generally toward the protein C-terminus.
Probab=97.34 E-value=0.0055 Score=55.61 Aligned_cols=133 Identities=17% Similarity=0.258 Sum_probs=73.2
Q ss_pred Ccchhc-cHHHHHHHHHHHh----c-CCCCc-EEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCCCChHHHHHH
Q 017884 52 LADVAA-HRDIVDTIDRLTS----E-NRLPH-LLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQ 124 (364)
Q Consensus 52 ~~~~vg-~~~~~~~l~~~~~----~-~~~~~-lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (364)
++++.+ .++.+..+..++. . ..... ++++|+.|+|||+++..+...+..... ....+. .
T Consensus 47 L~~~~~~d~~~~~~l~~~lg~~L~~~~~~~~~~~l~G~g~nGKStl~~~l~~l~G~~~~-----~~~~~~--~------- 112 (304)
T TIGR01613 47 LLETFGGDNELIEYLQRVIGYSLTGNYTEQKLFFLYGNGGNGKSTFQNLLSNLLGDYAT-----TAVASL--K------- 112 (304)
T ss_pred HHHHhCCCHHHHHHHHHHHhHHhcCCCCceEEEEEECCCCCcHHHHHHHHHHHhChhhc-----cCCcch--h-------
Confidence 344544 3445666666653 2 22222 799999999999999988766522110 000000 0
Q ss_pred HHHHHhcCccccCCccceEEEEEeCCCCCCHHHHHHHHHHHHH--------------hccCccEEEEeeccccC---chh
Q 017884 125 IQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEK--------------YTKNTRFALICNQVNKI---IPA 187 (364)
Q Consensus 125 i~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~--------------~~~~~~~Il~~~~~~~l---~~~ 187 (364)
+.++ ...++..+...+.++++.+|++.-.......|..+... ....+.+|+++|....+ ...
T Consensus 113 ~~~~-~~~~f~~a~l~gk~l~~~~E~~~~~~~~~~~lK~lt~gd~i~~~~k~k~~~~~~~~~~~i~~tN~~P~~~~~~~a 191 (304)
T TIGR01613 113 MNEF-QEHRFGLARLEGKRAVIGDEVQKGYRDDESTFKSLTGGDTITARFKNKDPFEFTPKFTLVQSTNHLPRIRGFDGG 191 (304)
T ss_pred hhhc-cCCCchhhhhcCCEEEEecCCCCCccccHHhhhhhhcCCeEEeecccCCcEEEEEeeEEEEEcCCCCccCCCChh
Confidence 0000 00011122223578999999865332233444444321 12456788999877655 357
Q ss_pred hhccceEEEecC
Q 017884 188 LQSRCTRFRFAP 199 (364)
Q Consensus 188 l~sr~~~i~~~~ 199 (364)
+.+|..++.|..
T Consensus 192 ~~RR~~vi~f~~ 203 (304)
T TIGR01613 192 IKRRLRIIPFTK 203 (304)
T ss_pred heeeEEEEeccC
Confidence 888998988854
No 353
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.34 E-value=0.0014 Score=54.00 Aligned_cols=43 Identities=16% Similarity=0.357 Sum_probs=32.0
Q ss_pred ceEEEEEeCC-CCCCHHHHHHHHHHHHHhccCccEEEEeecccc
Q 017884 141 SVKLVLLDEA-DAMTKDAQFALRRVIEKYTKNTRFALICNQVNK 183 (364)
Q Consensus 141 ~~~viiiDe~-~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~ 183 (364)
++.++++||. ..+.......+.+++.+......+|++++....
T Consensus 114 ~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~ 157 (171)
T cd03228 114 DPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLST 157 (171)
T ss_pred CCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHH
Confidence 5789999995 466677788888888877555567777766543
No 354
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=97.34 E-value=0.00017 Score=60.77 Aligned_cols=58 Identities=12% Similarity=0.158 Sum_probs=34.0
Q ss_pred ceEEEEEeCCCCCCHHHH------HHHHHHHHHhcc-CccEEEEeeccccCchhhhccc-eEEEec
Q 017884 141 SVKLVLLDEADAMTKDAQ------FALRRVIEKYTK-NTRFALICNQVNKIIPALQSRC-TRFRFA 198 (364)
Q Consensus 141 ~~~viiiDe~~~l~~~~~------~~L~~~le~~~~-~~~~Il~~~~~~~l~~~l~sr~-~~i~~~ 198 (364)
.+.++||||++...+... ......+..... ..-++++|..+..+++.++..+ ..+.+.
T Consensus 79 ~~~liviDEa~~~~~~r~~~~~~~~~~~~~l~~hRh~g~diiliTQ~~~~id~~ir~lve~~~~~~ 144 (193)
T PF05707_consen 79 KGSLIVIDEAQNFFPSRSWKGKKVPEIIEFLAQHRHYGWDIILITQSPSQIDKFIRDLVEYHYHCR 144 (193)
T ss_dssp TT-EEEETTGGGTSB---T-T----HHHHGGGGCCCTT-EEEEEES-GGGB-HHHHCCEEEEEEEE
T ss_pred CCcEEEEECChhhcCCCccccccchHHHHHHHHhCcCCcEEEEEeCCHHHHhHHHHHHHheEEEEE
Confidence 367999999998753321 223355554433 4558899988889999888765 334443
No 355
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=97.34 E-value=0.0029 Score=56.06 Aligned_cols=97 Identities=18% Similarity=0.279 Sum_probs=47.7
Q ss_pred CcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEE-----eCCC---CCChHHHHHHHHHHHhcCccccCCccceEEEE
Q 017884 75 PHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILEL-----NASD---DRGIDVVRQQIQDFASTQSFSFGVKASVKLVL 146 (364)
Q Consensus 75 ~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~-----~~~~---~~~~~~~~~~i~~~~~~~~~~~~~~~~~~vii 146 (364)
|-++++|-||+|||++++.|...+...+....++.- .... .......+..+....... .+ ...+||
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~~~~~~y~~~~~Ek~~R~~l~s~v~r~---ls---~~~iVI 75 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLGIDRNDYADSKKEKEARGSLKSAVERA---LS---KDTIVI 75 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH-TTSSS--GGGHHHHHHHHHHHHHHH---HT---T-SEEE
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccccchhhhhchhhhHHHHHHHHHHHHHh---hc---cCeEEE
Confidence 558999999999999999999988664443332221 1111 111223344443332221 12 257999
Q ss_pred EeCCCCCCHHHHHHHHHHHHHhccCccEEEEe
Q 017884 147 LDEADAMTKDAQFALRRVIEKYTKNTRFALIC 178 (364)
Q Consensus 147 iDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~ 178 (364)
+|+...+ +...-.|+.+-........+|.+.
T Consensus 76 ~Dd~nYi-Kg~RYelyclAr~~~~~~c~i~~~ 106 (270)
T PF08433_consen 76 LDDNNYI-KGMRYELYCLARAYGTTFCVIYCD 106 (270)
T ss_dssp E-S---S-HHHHHHHHHHHHHTT-EEEEEEEE
T ss_pred EeCCchH-HHHHHHHHHHHHHcCCCEEEEEEC
Confidence 9988766 455666666655544333344443
No 356
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.34 E-value=0.0018 Score=52.63 Aligned_cols=96 Identities=19% Similarity=0.275 Sum_probs=56.1
Q ss_pred CcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCC------------------CChHHHHHHHHHHHhcCcccc
Q 017884 75 PHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDD------------------RGIDVVRQQIQDFASTQSFSF 136 (364)
Q Consensus 75 ~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~------------------~~~~~~~~~i~~~~~~~~~~~ 136 (364)
..+.|.|+.|+|||++++.++..+... .-.+.++.... .+....+-.+....
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~~~~---~G~i~~~~~~~~~~~~~~~~~~i~~~~qlS~G~~~r~~l~~~l------- 95 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLLKPT---SGEILIDGKDIAKLPLEELRRRIGYVPQLSGGQRQRVALARAL------- 95 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCC---ccEEEECCEEcccCCHHHHHhceEEEeeCCHHHHHHHHHHHHH-------
Confidence 347999999999999999998875321 11122322110 01111111111111
Q ss_pred CCccceEEEEEeCCC-CCCHHHHHHHHHHHHHhccC-ccEEEEeeccc
Q 017884 137 GVKASVKLVLLDEAD-AMTKDAQFALRRVIEKYTKN-TRFALICNQVN 182 (364)
Q Consensus 137 ~~~~~~~viiiDe~~-~l~~~~~~~L~~~le~~~~~-~~~Il~~~~~~ 182 (364)
.. .+.++++||.. .+.......+.+.+.+.... ..++++++...
T Consensus 96 ~~--~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~ 141 (157)
T cd00267 96 LL--NPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPE 141 (157)
T ss_pred hc--CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 11 47899999975 55667788888888775443 45667765543
No 357
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.32 E-value=0.0016 Score=55.77 Aligned_cols=21 Identities=29% Similarity=0.493 Sum_probs=19.2
Q ss_pred cEEEeCCCCccHHHHHHHHHH
Q 017884 76 HLLLYGPPGTGKTSTILAVAR 96 (364)
Q Consensus 76 ~lll~G~~G~GKt~la~~l~~ 96 (364)
.++|+||.|+|||++.+.++.
T Consensus 31 ~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 31 IMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred EEEEECCCCCChHHHHHHHHH
Confidence 389999999999999999984
No 358
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=97.32 E-value=0.0019 Score=58.31 Aligned_cols=49 Identities=20% Similarity=0.262 Sum_probs=37.1
Q ss_pred CCCCcchhc----cHHHHHHHHHHHhcCCCCcEEEeCCCCccHHHHHHHHHHHHc
Q 017884 49 PQSLADVAA----HRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLY 99 (364)
Q Consensus 49 p~~~~~~vg----~~~~~~~l~~~~~~~~~~~lll~G~~G~GKt~la~~l~~~l~ 99 (364)
+.++++++. .+.....|..++..+ .+++++|++|+||||+++++...+.
T Consensus 105 ~~tl~~l~~~g~~~~~~~~~L~~~v~~~--~~ilI~G~tGSGKTTll~al~~~i~ 157 (299)
T TIGR02782 105 VFTLDDYVEAGIMTAAQRDVLREAVLAR--KNILVVGGTGSGKTTLANALLAEIA 157 (299)
T ss_pred CCCHHHHHhcCCCCHHHHHHHHHHHHcC--CeEEEECCCCCCHHHHHHHHHHHhh
Confidence 346677652 344566677777654 4699999999999999999998874
No 359
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.30 E-value=0.00069 Score=59.25 Aligned_cols=27 Identities=26% Similarity=0.453 Sum_probs=23.6
Q ss_pred CcEEEeCCCCccHHHHHHHHHHHHcCC
Q 017884 75 PHLLLYGPPGTGKTSTILAVARKLYGA 101 (364)
Q Consensus 75 ~~lll~G~~G~GKt~la~~l~~~l~~~ 101 (364)
..++|.||+|+|||++++.+++.+...
T Consensus 17 qr~~I~G~~G~GKTTLlr~I~n~l~~~ 43 (249)
T cd01128 17 QRGLIVAPPKAGKTTLLQSIANAITKN 43 (249)
T ss_pred CEEEEECCCCCCHHHHHHHHHhccccc
Confidence 448999999999999999999987544
No 360
>COG1485 Predicted ATPase [General function prediction only]
Probab=97.29 E-value=0.0036 Score=56.34 Aligned_cols=115 Identities=17% Similarity=0.217 Sum_probs=62.6
Q ss_pred EEEeCCCCccHHHHHHHHHHHHcCCC-CCCcEEEEeCCCCCChHHHHHHHHHHHhcCcc------ccCCccceEEEEEeC
Q 017884 77 LLLYGPPGTGKTSTILAVARKLYGAQ-YHNMILELNASDDRGIDVVRQQIQDFASTQSF------SFGVKASVKLVLLDE 149 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~------~~~~~~~~~viiiDe 149 (364)
+++||+-|.|||.+.-.+...+..+. ....+.. ....+.+.+........+ .+. +..+|+.+||
T Consensus 68 lYl~GgVGrGKT~LMD~Fy~~lp~~~k~R~HFh~-------FM~~vH~~l~~l~g~~dpl~~iA~~~~--~~~~vLCfDE 138 (367)
T COG1485 68 LYLWGGVGRGKTMLMDLFYESLPGERKRRLHFHR-------FMARVHQRLHTLQGQTDPLPPIADELA--AETRVLCFDE 138 (367)
T ss_pred EEEECCCCccHHHHHHHHHhhCCccccccccHHH-------HHHHHHHHHHHHcCCCCccHHHHHHHH--hcCCEEEeee
Confidence 99999999999999999999874322 1111000 011111111111100000 011 1578999999
Q ss_pred CCCCCHHHHHHHHHHHHHhccCcc-EEEEeeccc-----------cC---chhhhccceEEEecCC
Q 017884 150 ADAMTKDAQFALRRVIEKYTKNTR-FALICNQVN-----------KI---IPALQSRCTRFRFAPL 200 (364)
Q Consensus 150 ~~~l~~~~~~~L~~~le~~~~~~~-~Il~~~~~~-----------~l---~~~l~sr~~~i~~~~~ 200 (364)
++--.....-.|-+++++.-.+.+ ++.++|... .. +..|+++|.++.+..+
T Consensus 139 F~VtDI~DAMiL~rL~~~Lf~~GV~lvaTSN~~P~~LY~dGlqR~~FLP~I~li~~~~~v~~vD~~ 204 (367)
T COG1485 139 FEVTDIADAMILGRLLEALFARGVVLVATSNTAPDNLYKDGLQRERFLPAIDLIKSHFEVVNVDGP 204 (367)
T ss_pred eeecChHHHHHHHHHHHHHHHCCcEEEEeCCCChHHhcccchhHHhhHHHHHHHHHheEEEEecCC
Confidence 976655555566667776554444 445554322 22 2345677777665544
No 361
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.28 E-value=0.0034 Score=59.43 Aligned_cols=33 Identities=27% Similarity=0.388 Sum_probs=26.2
Q ss_pred EEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEE
Q 017884 77 LLLYGPPGTGKTSTILAVARKLYGAQYHNMILE 109 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~ 109 (364)
++|+|++|+||||++..++..+...+....++.
T Consensus 98 I~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~ 130 (437)
T PRK00771 98 IMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVA 130 (437)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHcCCeEEEec
Confidence 799999999999999999998865554443333
No 362
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=97.27 E-value=0.00099 Score=57.14 Aligned_cols=22 Identities=45% Similarity=0.853 Sum_probs=19.9
Q ss_pred EEEeCCCCccHHHHHHHHHHHH
Q 017884 77 LLLYGPPGTGKTSTILAVARKL 98 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l 98 (364)
++|.||+||||||+.+.+-+.+
T Consensus 30 ~vliGpSGsGKTTtLkMINrLi 51 (309)
T COG1125 30 LVLIGPSGSGKTTTLKMINRLI 51 (309)
T ss_pred EEEECCCCCcHHHHHHHHhccc
Confidence 7999999999999999987765
No 363
>PRK06762 hypothetical protein; Provisional
Probab=97.27 E-value=0.0068 Score=49.61 Aligned_cols=22 Identities=27% Similarity=0.600 Sum_probs=21.0
Q ss_pred EEEeCCCCccHHHHHHHHHHHH
Q 017884 77 LLLYGPPGTGKTSTILAVARKL 98 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l 98 (364)
++|+|++|+||||+++.+++.+
T Consensus 5 i~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 5 IIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6999999999999999999987
No 364
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=97.27 E-value=0.0027 Score=52.51 Aligned_cols=42 Identities=17% Similarity=0.317 Sum_probs=30.7
Q ss_pred ceEEEEEeCC-CCCCHHHHHHHHHHHHHhcc-CccEEEEeeccc
Q 017884 141 SVKLVLLDEA-DAMTKDAQFALRRVIEKYTK-NTRFALICNQVN 182 (364)
Q Consensus 141 ~~~viiiDe~-~~l~~~~~~~L~~~le~~~~-~~~~Il~~~~~~ 182 (364)
+++++++||. ..+.......+.+++..... ...+|++++...
T Consensus 114 ~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~ 157 (173)
T cd03246 114 NPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPE 157 (173)
T ss_pred CCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 5789999996 46677778888888877643 455777776654
No 365
>PRK14528 adenylate kinase; Provisional
Probab=97.26 E-value=0.0077 Score=50.39 Aligned_cols=24 Identities=29% Similarity=0.735 Sum_probs=21.8
Q ss_pred CcEEEeCCCCccHHHHHHHHHHHH
Q 017884 75 PHLLLYGPPGTGKTSTILAVARKL 98 (364)
Q Consensus 75 ~~lll~G~~G~GKt~la~~l~~~l 98 (364)
..+++.||||+|||++++.+++.+
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~ 25 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERL 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 458999999999999999999886
No 366
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=97.26 E-value=0.0023 Score=66.79 Aligned_cols=99 Identities=13% Similarity=0.209 Sum_probs=58.7
Q ss_pred cEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCCCChHHHHH-------HHHHHHhcCccccCCccceEEEEEe
Q 017884 76 HLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQ-------QIQDFASTQSFSFGVKASVKLVLLD 148 (364)
Q Consensus 76 ~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-------~i~~~~~~~~~~~~~~~~~~viiiD 148 (364)
..++.|++|+|||++++.+.......++ .++-+..+. .....+.+ .+..+.......-.......++|||
T Consensus 399 ~~~v~G~AGTGKTt~l~~~~~~~e~~G~--~V~g~ApTg-kAA~~L~e~~Gi~a~TIas~ll~~~~~~~~l~~~~vlVID 475 (1102)
T PRK13826 399 IAAVVGRAGAGKTTMMKAAREAWEAAGY--RVVGGALAG-KAAEGLEKEAGIQSRTLSSWELRWNQGRDQLDNKTVFVLD 475 (1102)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHcCC--eEEEEcCcH-HHHHHHHHhhCCCeeeHHHHHhhhccCccCCCCCcEEEEE
Confidence 3799999999999999999887654443 233222111 10011110 0112111000000011136799999
Q ss_pred CCCCCCHHHHHHHHHHHHHhccCccEEEEee
Q 017884 149 EADAMTKDAQFALRRVIEKYTKNTRFALICN 179 (364)
Q Consensus 149 e~~~l~~~~~~~L~~~le~~~~~~~~Il~~~ 179 (364)
|+..+.......|++..+. ..+++|++++
T Consensus 476 EAsMv~~~~m~~Ll~~~~~--~garvVLVGD 504 (1102)
T PRK13826 476 EAGMVASRQMALFVEAVTR--AGAKLVLVGD 504 (1102)
T ss_pred CcccCCHHHHHHHHHHHHh--cCCEEEEECC
Confidence 9999998888888877753 4688999985
No 367
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.26 E-value=0.0026 Score=59.12 Aligned_cols=48 Identities=29% Similarity=0.524 Sum_probs=33.8
Q ss_pred HHHHHHhcCCCCc--EEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCC
Q 017884 64 TIDRLTSENRLPH--LLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNAS 113 (364)
Q Consensus 64 ~l~~~~~~~~~~~--lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~ 113 (364)
.|...+..|-.+. ++++|+||+|||+++..++..+...+ ..+++++..
T Consensus 70 eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~~a~~g--~~VlYvs~E 119 (372)
T cd01121 70 ELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRG--GKVLYVSGE 119 (372)
T ss_pred HHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcC--CeEEEEECC
Confidence 5556666654444 69999999999999999998875432 345555543
No 368
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=97.25 E-value=0.0012 Score=55.01 Aligned_cols=105 Identities=17% Similarity=0.281 Sum_probs=58.4
Q ss_pred CcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCCC--ChHHHHHHH-------H-----HHHhcCccccCC--
Q 017884 75 PHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDR--GIDVVRQQI-------Q-----DFASTQSFSFGV-- 138 (364)
Q Consensus 75 ~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~i-------~-----~~~~~~~~~~~~-- 138 (364)
..+.|.||+|+||||+++.++..+.... + -+.+++.+.. .....+..+ . .........++.
T Consensus 26 ~~~~l~G~nGsGKStLl~~i~G~~~~~~-G--~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~G~ 102 (180)
T cd03214 26 EIVGILGPNGAGKSTLLKTLAGLLKPSS-G--EILLDGKDLASLSPKELARKIAYVPQALELLGLAHLADRPFNELSGGE 102 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCC-c--EEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCHHH
Confidence 3489999999999999999988653211 1 1223321110 111111111 0 111111100110
Q ss_pred ----------ccceEEEEEeCC-CCCCHHHHHHHHHHHHHhcc--CccEEEEeeccc
Q 017884 139 ----------KASVKLVLLDEA-DAMTKDAQFALRRVIEKYTK--NTRFALICNQVN 182 (364)
Q Consensus 139 ----------~~~~~viiiDe~-~~l~~~~~~~L~~~le~~~~--~~~~Il~~~~~~ 182 (364)
..++.++++||. ..+.......+.+++.+... ...+|++++...
T Consensus 103 ~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~ 159 (180)
T cd03214 103 RQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLN 159 (180)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 126789999996 46677788888888887654 455677776544
No 369
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=97.25 E-value=0.0023 Score=55.84 Aligned_cols=58 Identities=19% Similarity=0.168 Sum_probs=35.5
Q ss_pred HHHHHHhcCCCCc--EEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCCCChHHHHHHH
Q 017884 64 TIDRLTSENRLPH--LLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQI 125 (364)
Q Consensus 64 ~l~~~~~~~~~~~--lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i 125 (364)
.|...+.+|-.+. ++++||||+|||+++..++......+ ..++.++... ..+.+.+..
T Consensus 9 ~LD~~l~GG~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~g--e~~lyvs~ee--~~~~i~~~~ 68 (237)
T TIGR03877 9 GMDEILHGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMG--EPGIYVALEE--HPVQVRRNM 68 (237)
T ss_pred hHHHHhcCCCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcC--CcEEEEEeeC--CHHHHHHHH
Confidence 3445565554444 79999999999999988876643333 3445554432 334444433
No 370
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=97.25 E-value=0.0014 Score=53.03 Aligned_cols=34 Identities=29% Similarity=0.572 Sum_probs=28.8
Q ss_pred cEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEE
Q 017884 76 HLLLYGPPGTGKTSTILAVARKLYGAQYHNMILE 109 (364)
Q Consensus 76 ~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~ 109 (364)
.+.|+|.+|+||||+|.++.+.|...+....++.
T Consensus 25 viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LD 58 (197)
T COG0529 25 VIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLD 58 (197)
T ss_pred EEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEec
Confidence 4799999999999999999999988776555443
No 371
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=97.25 E-value=0.003 Score=52.46 Aligned_cols=43 Identities=21% Similarity=0.257 Sum_probs=32.3
Q ss_pred ceEEEEEeCC-CCCCHHHHHHHHHHHHHhccCccEEEEeecccc
Q 017884 141 SVKLVLLDEA-DAMTKDAQFALRRVIEKYTKNTRFALICNQVNK 183 (364)
Q Consensus 141 ~~~viiiDe~-~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~ 183 (364)
+++++++||. ..+.......+.+.+.+......+|++++....
T Consensus 116 ~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~ 159 (178)
T cd03247 116 DAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTG 159 (178)
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHH
Confidence 5789999996 566677788888888876555567777766554
No 372
>PRK08118 topology modulation protein; Reviewed
Probab=97.24 E-value=0.00072 Score=55.53 Aligned_cols=27 Identities=26% Similarity=0.433 Sum_probs=23.4
Q ss_pred CcEEEeCCCCccHHHHHHHHHHHHcCC
Q 017884 75 PHLLLYGPPGTGKTSTILAVARKLYGA 101 (364)
Q Consensus 75 ~~lll~G~~G~GKt~la~~l~~~l~~~ 101 (364)
..+++.||+|+||||+|+.+++.+..+
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~ 28 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIP 28 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 348999999999999999999998443
No 373
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.22 E-value=0.0028 Score=53.13 Aligned_cols=40 Identities=13% Similarity=0.297 Sum_probs=29.1
Q ss_pred ceEEEEEeCCCC-CCHHHHHHHHHHHHHhccCc-cEEEEeec
Q 017884 141 SVKLVLLDEADA-MTKDAQFALRRVIEKYTKNT-RFALICNQ 180 (364)
Q Consensus 141 ~~~viiiDe~~~-l~~~~~~~L~~~le~~~~~~-~~Il~~~~ 180 (364)
+++++++||.-. |.++.....+..|.+..... ..|++|..
T Consensus 154 ~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHE 195 (240)
T COG1126 154 DPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHE 195 (240)
T ss_pred CCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEech
Confidence 688999999754 56777888888888776544 45666643
No 374
>PRK07261 topology modulation protein; Provisional
Probab=97.21 E-value=0.0016 Score=53.79 Aligned_cols=22 Identities=18% Similarity=0.437 Sum_probs=20.6
Q ss_pred EEEeCCCCccHHHHHHHHHHHH
Q 017884 77 LLLYGPPGTGKTSTILAVARKL 98 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l 98 (364)
+++.|++|+||||+++.+++.+
T Consensus 3 i~i~G~~GsGKSTla~~l~~~~ 24 (171)
T PRK07261 3 IAIIGYSGSGKSTLARKLSQHY 24 (171)
T ss_pred EEEEcCCCCCHHHHHHHHHHHh
Confidence 7899999999999999999886
No 375
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=97.20 E-value=0.003 Score=55.86 Aligned_cols=31 Identities=16% Similarity=0.130 Sum_probs=23.5
Q ss_pred EEEeCCCCccHHHHHHHHHHHHcCCCCCCcE
Q 017884 77 LLLYGPPGTGKTSTILAVARKLYGAQYHNMI 107 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l~~~~~~~~~ 107 (364)
++++|+||+|||+++..++......+....+
T Consensus 39 ~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vly 69 (259)
T TIGR03878 39 INITGVSDTGKSLMVEQFAVTQASRGNPVLF 69 (259)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHhCCCcEEE
Confidence 7999999999999999987765444333333
No 376
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.19 E-value=0.0031 Score=58.82 Aligned_cols=124 Identities=17% Similarity=0.262 Sum_probs=61.0
Q ss_pred EEEeCCCCccHHHHHHHHHHHH-cCCCCCCcEEEEeCCCCCChHHHHHHHHHHHhcCccccC------------CccceE
Q 017884 77 LLLYGPPGTGKTSTILAVARKL-YGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFG------------VKASVK 143 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~------------~~~~~~ 143 (364)
++|.||+|+||||++..++... ...+....++ ++..... .. ...+..++.....++. ...++.
T Consensus 226 i~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Li--t~Dt~R~-aA-~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D 301 (432)
T PRK12724 226 VFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLY--TTDNYRI-AA-IEQLKRYADTMGMPFYPVKDIKKFKETLARDGSE 301 (432)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEe--cccchhh-hH-HHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCC
Confidence 6899999999999999999764 2333322222 2222111 11 1112222111111000 012467
Q ss_pred EEEEeCCCCCC--HHHHHHHHHHHHHh----ccCccEEEEeeccccCchhhhcc-----ceEEEecCCChHH
Q 017884 144 LVLLDEADAMT--KDAQFALRRVIEKY----TKNTRFALICNQVNKIIPALQSR-----CTRFRFAPLEPVH 204 (364)
Q Consensus 144 viiiDe~~~l~--~~~~~~L~~~le~~----~~~~~~Il~~~~~~~l~~~l~sr-----~~~i~~~~~~~~~ 204 (364)
+|+||=+.... ....+.|.++++.. +..+.+|+.++....-...+.++ ..-+-|..++...
T Consensus 302 ~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~~~f~~~~~~glIlTKLDEt~ 373 (432)
T PRK12724 302 LILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLKAYESLNYRRILLTKLDEAD 373 (432)
T ss_pred EEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHHHHhcCCCCCEEEEEcccCCC
Confidence 89999776653 45556666666542 22445555544332212222222 1335566666643
No 377
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.19 E-value=0.0049 Score=52.96 Aligned_cols=48 Identities=27% Similarity=0.446 Sum_probs=33.2
Q ss_pred HHHHHHhcCCCCc--EEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCC
Q 017884 64 TIDRLTSENRLPH--LLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNAS 113 (364)
Q Consensus 64 ~l~~~~~~~~~~~--lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~ 113 (364)
.|...+..|-.+. ++++|+||+|||+++..++......+ ..++.++..
T Consensus 7 ~LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g--~~v~yi~~e 56 (218)
T cd01394 7 GLDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVETAGQG--KKVAYIDTE 56 (218)
T ss_pred HHHHHhcCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhcC--CeEEEEECC
Confidence 3455555553333 69999999999999999998875443 344555543
No 378
>PF13479 AAA_24: AAA domain
Probab=97.19 E-value=0.00095 Score=57.20 Aligned_cols=18 Identities=50% Similarity=1.123 Sum_probs=17.1
Q ss_pred EEEeCCCCccHHHHHHHH
Q 017884 77 LLLYGPPGTGKTSTILAV 94 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l 94 (364)
++|||+||+|||+++..+
T Consensus 6 ~lIyG~~G~GKTt~a~~~ 23 (213)
T PF13479_consen 6 ILIYGPPGSGKTTLAASL 23 (213)
T ss_pred EEEECCCCCCHHHHHHhC
Confidence 899999999999999888
No 379
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=97.17 E-value=0.0057 Score=53.77 Aligned_cols=178 Identities=19% Similarity=0.198 Sum_probs=96.4
Q ss_pred CCcchhccHHHHH---HHHHHHhcCCCCcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCCCChH--------
Q 017884 51 SLADVAAHRDIVD---TIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGID-------- 119 (364)
Q Consensus 51 ~~~~~vg~~~~~~---~l~~~~~~~~~~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~-------- 119 (364)
...++++-+.... .+...-..+. ...+||.+|.|||..++.++... .+.+-..++......
T Consensus 70 ~~~~~l~tkt~r~~~~~~~~A~k~g~--l~~vyg~~g~gKt~a~~~y~~s~------p~~~l~~~~p~~~a~~~i~~i~~ 141 (297)
T COG2842 70 LAPDFLETKTVRRIFFRTRPASKTGS--LVVVYGYAGLGKTQAAKNYAPSN------PNALLIEADPSYTALVLILIICA 141 (297)
T ss_pred ccccccccchhHhHhhhhhhhhhcCc--eEEEeccccchhHHHHHhhcccC------ccceeecCChhhHHHHHHHHHHH
Confidence 4455666554432 3333333332 36999999999999999988763 222222222211111
Q ss_pred --------HHHHHHHHHHhcCccccCCccceEEEEEeCCCCCCHHHHHHHHHHHHHhccCccEEEEeecc--------cc
Q 017884 120 --------VVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQV--------NK 183 (364)
Q Consensus 120 --------~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~--------~~ 183 (364)
.+.+........ . ....++|++||++.|.....+.+.+..++.. +-++++.+.. ..
T Consensus 142 ~~~~~~~~~~~d~~~~~~~~----l--~~~~~~iivDEA~~L~~~ale~lr~i~d~~G--i~~vLvG~prL~~~l~~~~~ 213 (297)
T COG2842 142 AAFGATDGTINDLTERLMIR----L--RDTVRLIIVDEADRLPYRALEELRRIHDKTG--IGVVLVGMPRLFKVLRRPED 213 (297)
T ss_pred HHhcccchhHHHHHHHHHHH----H--ccCcceeeeehhhccChHHHHHHHHHHHhhC--ceEEEecChHHHhccccchH
Confidence 111111111111 1 1257899999999999999999999988764 4566666432 11
Q ss_pred CchhhhccceE---EEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 017884 184 IIPALQSRCTR---FRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHM 248 (364)
Q Consensus 184 l~~~l~sr~~~---i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~a~~~l~~~~~ 248 (364)
....+.+|..+ +...-++..+...+....+ ....++.+..+....+|++|.+-..+.....
T Consensus 214 ~~~rl~srv~v~~~~~~~~~d~d~~~~~~~~~l----~~~~~~~v~~~~~~~~g~~~~L~~~l~~~~~ 277 (297)
T COG2842 214 ELSRLYSRVRVGKLLGEKFPDADELAEIAALVL----PTEDELVLMQVIKETEGNIRRLDKILAGAVG 277 (297)
T ss_pred HHHHHHHHhhhHhhhhhhhhhhHHHHHHHHhhC----ccchHHHHHHHHHhcchhHhHHHHHHhhhhh
Confidence 12223333211 1111122233333333221 1256677777777788988888777755443
No 380
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=97.16 E-value=0.0042 Score=63.02 Aligned_cols=172 Identities=13% Similarity=0.173 Sum_probs=103.5
Q ss_pred Ccchhcc-HHHHHHHHHHHhcCCCCcEEEeCCCCccHHHHHHHHHHHHcCCCCC-------CcEEEEeC--CCCCChHHH
Q 017884 52 LADVAAH-RDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYH-------NMILELNA--SDDRGIDVV 121 (364)
Q Consensus 52 ~~~~vg~-~~~~~~l~~~~~~~~~~~lll~G~~G~GKt~la~~l~~~l~~~~~~-------~~~~~~~~--~~~~~~~~~ 121 (364)
++-++|+ ++.+..+.+.+......+-+|.|+||+|||.++.-+++.+.....+ ..++.+.. ........+
T Consensus 185 ldPvigr~deeirRvi~iL~Rrtk~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~g~l~aGa~~rge~ 264 (898)
T KOG1051|consen 185 LDPVIGRHDEEIRRVIEILSRKTKNNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDFGSLVAGAKRRGEF 264 (898)
T ss_pred CCCccCCchHHHHHHHHHHhccCCCCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEhhhcccCcccchHH
Confidence 5678887 7777777777776666678899999999999999999987543221 22222221 111122344
Q ss_pred HHHHHHHHhcCccccCCccceEEEEEeCCCCCCHHH--------HHHHHHHHHHhccCccEEEEeecc-----ccCchhh
Q 017884 122 RQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDA--------QFALRRVIEKYTKNTRFALICNQV-----NKIIPAL 188 (364)
Q Consensus 122 ~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~--------~~~L~~~le~~~~~~~~Il~~~~~-----~~l~~~l 188 (364)
...++.......- .+++-|++|||++.+.... .+.|...+. .. ..++|-+|+.. -.-.|++
T Consensus 265 E~rlk~l~k~v~~----~~~gvILfigelh~lvg~g~~~~~~d~~nlLkp~L~-rg-~l~~IGatT~e~Y~k~iekdPal 338 (898)
T KOG1051|consen 265 EERLKELLKEVES----GGGGVILFLGELHWLVGSGSNYGAIDAANLLKPLLA-RG-GLWCIGATTLETYRKCIEKDPAL 338 (898)
T ss_pred HHHHHHHHHHHhc----CCCcEEEEecceeeeecCCCcchHHHHHHhhHHHHh-cC-CeEEEecccHHHHHHHHhhCcch
Confidence 4445444332110 1257899999999996322 222222222 22 26677766421 1346788
Q ss_pred hccceEEEecCCChHHHHHHHHHHHHH----cCCCCCHHHHHHHH
Q 017884 189 QSRCTRFRFAPLEPVHVTERLKHVIEA----EGLDVTEGGLAALV 229 (364)
Q Consensus 189 ~sr~~~i~~~~~~~~~~~~~l~~~~~~----~~~~i~~~~~~~l~ 229 (364)
.+|++.+.++-|+.++...++.....+ .|..+++.+....+
T Consensus 339 Errw~l~~v~~pS~~~~~~iL~~l~~~~e~~hg~~~s~~a~~~a~ 383 (898)
T KOG1051|consen 339 ERRWQLVLVPIPSVENLSLILPGLSERYEVHHGVRISDESLFSAA 383 (898)
T ss_pred hhCcceeEeccCcccchhhhhhhhhhhhccccCCccccccccccc
Confidence 889988888888877766666655444 34555555443333
No 381
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=97.16 E-value=0.00086 Score=59.78 Aligned_cols=52 Identities=25% Similarity=0.390 Sum_probs=37.5
Q ss_pred CCCcchhccHHHHHHHHHHHhcC--CCCcEEEeCCCCccHHHHHHHHHHHHcCC
Q 017884 50 QSLADVAAHRDIVDTIDRLTSEN--RLPHLLLYGPPGTGKTSTILAVARKLYGA 101 (364)
Q Consensus 50 ~~~~~~vg~~~~~~~l~~~~~~~--~~~~lll~G~~G~GKt~la~~l~~~l~~~ 101 (364)
.+++++.-.......+.+.+... ...++++.|++|+||||++.++...+...
T Consensus 101 ~sle~l~~~~~~~~~~~~~l~~~v~~~~~ili~G~tGSGKTT~l~all~~i~~~ 154 (270)
T PF00437_consen 101 FSLEDLGESGSIPEEIAEFLRSAVRGRGNILISGPTGSGKTTLLNALLEEIPPE 154 (270)
T ss_dssp -CHCCCCHTHHCHHHHHHHHHHCHHTTEEEEEEESTTSSHHHHHHHHHHHCHTT
T ss_pred ccHhhccCchhhHHHHHHHHhhccccceEEEEECCCccccchHHHHHhhhcccc
Confidence 36777776655555555555543 12458999999999999999999987544
No 382
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.16 E-value=0.0042 Score=52.58 Aligned_cols=25 Identities=32% Similarity=0.590 Sum_probs=22.1
Q ss_pred cEEEeCCCCccHHHHHHHHHHHHcC
Q 017884 76 HLLLYGPPGTGKTSTILAVARKLYG 100 (364)
Q Consensus 76 ~lll~G~~G~GKt~la~~l~~~l~~ 100 (364)
.++|.||+|+||||++.+++..+..
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~ 27 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINK 27 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhh
Confidence 3799999999999999999988753
No 383
>PF13245 AAA_19: Part of AAA domain
Probab=97.15 E-value=0.00081 Score=47.18 Aligned_cols=25 Identities=48% Similarity=0.834 Sum_probs=17.8
Q ss_pred CcEEEeCCCCccHHHHHHHHHHHHc
Q 017884 75 PHLLLYGPPGTGKTSTILAVARKLY 99 (364)
Q Consensus 75 ~~lll~G~~G~GKt~la~~l~~~l~ 99 (364)
+.+++.||||+|||+++...+..+.
T Consensus 11 ~~~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 11 PLFVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 3367799999999965555555543
No 384
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=97.15 E-value=0.0018 Score=52.94 Aligned_cols=101 Identities=15% Similarity=0.176 Sum_probs=60.0
Q ss_pred cEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCC-CCChH-----------------------------HHHHHH
Q 017884 76 HLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASD-DRGID-----------------------------VVRQQI 125 (364)
Q Consensus 76 ~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~-~~~~~-----------------------------~~~~~i 125 (364)
-+.+|+++|.|||+.|-.++-...+.+....++.|--.. ..+.. ..++..
T Consensus 7 li~v~~g~GkGKtt~a~g~a~ra~~~g~~v~ivQFlKg~~~~GE~~~l~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~~~ 86 (173)
T TIGR00708 7 IIIVHTGNGKGKTTAAFGMALRALGHGKKVGVIQFIKGAWPNGERAAFEPHGVEFQVMGTGFTWETQNREADTAIAKAAW 86 (173)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCcccChHHHHHhcCcEEEECCCCCeecCCCcHHHHHHHHHHH
Confidence 478889999999999999998877666555433331111 01110 011111
Q ss_pred HHHHhcCccccCCccceEEEEEeCCCCCCHH---HHHHHHHHHHHhccCccEEEEeecc
Q 017884 126 QDFASTQSFSFGVKASVKLVLLDEADAMTKD---AQFALRRVIEKYTKNTRFALICNQV 181 (364)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~---~~~~L~~~le~~~~~~~~Il~~~~~ 181 (364)
....... . .+.+.+||+||+-....- ..+.+.++++..|+++.+|++....
T Consensus 87 ~~a~~~l---~--~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~ 140 (173)
T TIGR00708 87 QHAKEML---A--DPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGC 140 (173)
T ss_pred HHHHHHH---h--cCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCC
Confidence 1111110 0 125889999998532110 1346778888889999999999654
No 385
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=97.15 E-value=0.0033 Score=51.70 Aligned_cols=23 Identities=22% Similarity=0.267 Sum_probs=21.0
Q ss_pred cEEEeCCCCccHHHHHHHHHHHH
Q 017884 76 HLLLYGPPGTGKTSTILAVARKL 98 (364)
Q Consensus 76 ~lll~G~~G~GKt~la~~l~~~l 98 (364)
.+++.|+||+|||++|..++...
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~ 25 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQS 25 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHc
Confidence 37999999999999999999875
No 386
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.15 E-value=0.0039 Score=57.65 Aligned_cols=22 Identities=41% Similarity=0.673 Sum_probs=20.7
Q ss_pred EEEeCCCCccHHHHHHHHHHHH
Q 017884 77 LLLYGPPGTGKTSTILAVARKL 98 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l 98 (364)
++|.||+|+||||++..++..+
T Consensus 140 i~lvGptGvGKTTtiakLA~~~ 161 (374)
T PRK14722 140 FALMGPTGVGKTTTTAKLAARC 161 (374)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 7999999999999999999875
No 387
>PRK11823 DNA repair protein RadA; Provisional
Probab=97.15 E-value=0.0035 Score=59.82 Aligned_cols=48 Identities=31% Similarity=0.547 Sum_probs=33.7
Q ss_pred HHHHHHhcCCCCc--EEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCC
Q 017884 64 TIDRLTSENRLPH--LLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNAS 113 (364)
Q Consensus 64 ~l~~~~~~~~~~~--lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~ 113 (364)
.|...+..|-.+. ++|+|+||+|||+++..++...... ...+++++..
T Consensus 68 ~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~--g~~vlYvs~E 117 (446)
T PRK11823 68 ELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLAAA--GGKVLYVSGE 117 (446)
T ss_pred HHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEEcc
Confidence 5566666654444 6999999999999999999887532 2345555543
No 388
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.14 E-value=0.0031 Score=59.57 Aligned_cols=116 Identities=17% Similarity=0.295 Sum_probs=71.4
Q ss_pred CCCCcchhccHHHHHHHHHHHhcCCCCcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCC--------------
Q 017884 49 PQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASD-------------- 114 (364)
Q Consensus 49 p~~~~~~vg~~~~~~~l~~~~~~~~~~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~-------------- 114 (364)
+.+|+++...+.....+.+.+.... .-+|++||+|+||||+...+.+.++..... ++.+..+-
T Consensus 234 ~l~l~~Lg~~~~~~~~~~~~~~~p~-GliLvTGPTGSGKTTTLY~~L~~ln~~~~n--I~TiEDPVE~~~~gI~Q~qVN~ 310 (500)
T COG2804 234 ILDLEKLGMSPFQLARLLRLLNRPQ-GLILVTGPTGSGKTTTLYAALSELNTPERN--IITIEDPVEYQLPGINQVQVNP 310 (500)
T ss_pred cCCHHHhCCCHHHHHHHHHHHhCCC-eEEEEeCCCCCCHHHHHHHHHHHhcCCCce--EEEeeCCeeeecCCcceeeccc
Confidence 4567888888888888888887652 227999999999999999999998765432 22221111
Q ss_pred CCChHHHHHHHHHHHhcCccccCCccceEEEEEeCCCCCCHHHHHHHHHHHHHhccCccEEEEeecccc
Q 017884 115 DRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNK 183 (364)
Q Consensus 115 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~ 183 (364)
..+. .+...++.+... ++.||+|.|+-.... ++-++... -+..+||+|=....
T Consensus 311 k~gl-tfa~~LRa~LRq---------DPDvImVGEIRD~ET-AeiavqAa-----lTGHLVlSTlHtnd 363 (500)
T COG2804 311 KIGL-TFARALRAILRQ---------DPDVIMVGEIRDLET-AEIAVQAA-----LTGHLVLSTLHTND 363 (500)
T ss_pred ccCC-CHHHHHHHHhcc---------CCCeEEEeccCCHHH-HHHHHHHH-----hcCCeEeeecccCc
Confidence 1111 122334444332 578999999965532 22222222 25678888733333
No 389
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=97.14 E-value=0.0017 Score=55.37 Aligned_cols=42 Identities=19% Similarity=0.335 Sum_probs=29.6
Q ss_pred ceEEEEEeCCCCC-CHHHHHHHHHHHHHhcc--CccEEEEeeccc
Q 017884 141 SVKLVLLDEADAM-TKDAQFALRRVIEKYTK--NTRFALICNQVN 182 (364)
Q Consensus 141 ~~~viiiDe~~~l-~~~~~~~L~~~le~~~~--~~~~Il~~~~~~ 182 (364)
.++++++||.-.. ....|..+++++.+... +..+||++.+..
T Consensus 159 ~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~ 203 (252)
T COG1124 159 EPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLA 203 (252)
T ss_pred CCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHH
Confidence 6889999997554 45667777777776543 456788886543
No 390
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=97.13 E-value=0.0032 Score=61.22 Aligned_cols=41 Identities=20% Similarity=0.291 Sum_probs=33.3
Q ss_pred ceEEEEEeCC-CCCCHHHHHHHHHHHHHhccCccEEEEeecc
Q 017884 141 SVKLVLLDEA-DAMTKDAQFALRRVIEKYTKNTRFALICNQV 181 (364)
Q Consensus 141 ~~~viiiDe~-~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~ 181 (364)
+++++++||+ ..|.++.+..+...+++.-+++.+|-++..+
T Consensus 533 kP~~v~LDEATsALDe~~e~~l~q~l~~~lp~~tvISV~Hr~ 574 (604)
T COG4178 533 KPKWVFLDEATSALDEETEDRLYQLLKEELPDATVISVGHRP 574 (604)
T ss_pred CCCEEEEecchhccChHHHHHHHHHHHhhCCCCEEEEeccch
Confidence 6899999998 5567788999999999865677788887543
No 391
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.13 E-value=0.0071 Score=54.77 Aligned_cols=38 Identities=24% Similarity=0.325 Sum_probs=27.2
Q ss_pred HHHHHHh-cCCCCc--EEEeCCCCccHHHHHHHHHHHHcCC
Q 017884 64 TIDRLTS-ENRLPH--LLLYGPPGTGKTSTILAVARKLYGA 101 (364)
Q Consensus 64 ~l~~~~~-~~~~~~--lll~G~~G~GKt~la~~l~~~l~~~ 101 (364)
.|...+. .|-++. +.|+||||+|||+++..++......
T Consensus 42 ~LD~~Lg~GGlp~G~iteI~G~~GsGKTtLaL~~~~~~~~~ 82 (321)
T TIGR02012 42 SLDLALGVGGLPRGRIIEIYGPESSGKTTLALHAIAEAQKA 82 (321)
T ss_pred HHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 4445555 443333 6999999999999999888776544
No 392
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=97.13 E-value=0.0095 Score=50.46 Aligned_cols=35 Identities=31% Similarity=0.437 Sum_probs=27.4
Q ss_pred HHHHHhcCCCCcEEEeCCCCccHHHHHHHHHHHHc
Q 017884 65 IDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLY 99 (364)
Q Consensus 65 l~~~~~~~~~~~lll~G~~G~GKt~la~~l~~~l~ 99 (364)
+...+.+...-+.++.||||+||||+.+-+++-+.
T Consensus 128 li~~ly~~g~lntLiigpP~~GKTTlLRdiaR~~s 162 (308)
T COG3854 128 LIKDLYQNGWLNTLIIGPPQVGKTTLLRDIARLLS 162 (308)
T ss_pred HHHHHHhcCceeeEEecCCCCChHHHHHHHHHHhh
Confidence 33444445555689999999999999999999874
No 393
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=97.13 E-value=0.0023 Score=53.13 Aligned_cols=102 Identities=15% Similarity=0.132 Sum_probs=61.2
Q ss_pred CcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCC-CCCh---------------------------HH---HHH
Q 017884 75 PHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASD-DRGI---------------------------DV---VRQ 123 (364)
Q Consensus 75 ~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~-~~~~---------------------------~~---~~~ 123 (364)
..+.+||++|.|||+.|..++-+..+.+....++.|--.. ..+. .. .++
T Consensus 23 g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFlKg~~~~GE~~~l~~l~~v~~~~~g~~~~~~~~~~~e~~~~~~~ 102 (191)
T PRK05986 23 GLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFIKGAWSTGERNLLEFGGGVEFHVMGTGFTWETQDRERDIAAARE 102 (191)
T ss_pred CeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCCccCHHHHHhcCCCcEEEECCCCCcccCCCcHHHHHHHHH
Confidence 4589999999999999999988876665444333331111 0000 01 111
Q ss_pred HHHHHHhcCccccCCccceEEEEEeCCCCCCHH---HHHHHHHHHHHhccCccEEEEeecc
Q 017884 124 QIQDFASTQSFSFGVKASVKLVLLDEADAMTKD---AQFALRRVIEKYTKNTRFALICNQV 181 (364)
Q Consensus 124 ~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~---~~~~L~~~le~~~~~~~~Il~~~~~ 181 (364)
.+....... . .+.+.+||+||+-....- ..+.+.++++..|..+-+|++....
T Consensus 103 ~~~~a~~~l---~--~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~ 158 (191)
T PRK05986 103 GWEEAKRML---A--DESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGA 158 (191)
T ss_pred HHHHHHHHH---h--CCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCC
Confidence 111111110 0 125889999997444321 2456788888889999999999644
No 394
>PRK04328 hypothetical protein; Provisional
Probab=97.12 E-value=0.0034 Score=55.15 Aligned_cols=37 Identities=24% Similarity=0.249 Sum_probs=26.3
Q ss_pred HHHHHhcCCCCc--EEEeCCCCccHHHHHHHHHHHHcCC
Q 017884 65 IDRLTSENRLPH--LLLYGPPGTGKTSTILAVARKLYGA 101 (364)
Q Consensus 65 l~~~~~~~~~~~--lll~G~~G~GKt~la~~l~~~l~~~ 101 (364)
|...+.+|-++. ++++|+||+|||+++..++..-...
T Consensus 12 LD~lL~GGip~gs~ili~G~pGsGKT~l~~~fl~~~~~~ 50 (249)
T PRK04328 12 MDEILYGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQM 50 (249)
T ss_pred HHHHhcCCCcCCcEEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 444455554333 7999999999999999887664333
No 395
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=97.10 E-value=0.00087 Score=58.25 Aligned_cols=21 Identities=29% Similarity=0.659 Sum_probs=19.4
Q ss_pred EEEeCCCCccHHHHHHHHHHH
Q 017884 77 LLLYGPPGTGKTSTILAVARK 97 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~ 97 (364)
+++.|+||+|||++++.+...
T Consensus 1 ~vv~G~pGsGKSt~i~~~~~~ 21 (234)
T PF01443_consen 1 IVVHGVPGSGKSTLIKKLLKD 21 (234)
T ss_pred CEEEcCCCCCHHHHHHHHHHh
Confidence 478999999999999999988
No 396
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.10 E-value=0.011 Score=56.73 Aligned_cols=25 Identities=40% Similarity=0.685 Sum_probs=21.5
Q ss_pred cEEEeCCCCccHHHHHHHHHHHHcC
Q 017884 76 HLLLYGPPGTGKTSTILAVARKLYG 100 (364)
Q Consensus 76 ~lll~G~~G~GKt~la~~l~~~l~~ 100 (364)
.+.|.||+|+||||++..|+..+..
T Consensus 352 vIaLVGPtGvGKTTtaakLAa~la~ 376 (559)
T PRK12727 352 VIALVGPTGAGKTTTIAKLAQRFAA 376 (559)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3789999999999999999887643
No 397
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=97.08 E-value=0.0036 Score=56.87 Aligned_cols=48 Identities=19% Similarity=0.283 Sum_probs=35.8
Q ss_pred CCCCcchhc----cHHHHHHHHHHHhcCCCCcEEEeCCCCccHHHHHHHHHHHH
Q 017884 49 PQSLADVAA----HRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKL 98 (364)
Q Consensus 49 p~~~~~~vg----~~~~~~~l~~~~~~~~~~~lll~G~~G~GKt~la~~l~~~l 98 (364)
+.++++++. .+.....|..++..+ .++++.|++|+||||++++++..+
T Consensus 121 ~~tl~~l~~~g~~~~~~~~~L~~~v~~~--~~ilI~G~tGSGKTTll~aL~~~~ 172 (319)
T PRK13894 121 IFTLDQYVERGIMTAAQREAIIAAVRAH--RNILVIGGTGSGKTTLVNAIINEM 172 (319)
T ss_pred CCCHHHHHhcCCCCHHHHHHHHHHHHcC--CeEEEECCCCCCHHHHHHHHHHhh
Confidence 346677753 244555666666654 569999999999999999999875
No 398
>KOG3928 consensus Mitochondrial ribosome small subunit component, mediator of apoptosis DAP3 [Translation, ribosomal structure and biogenesis]
Probab=97.08 E-value=0.045 Score=50.37 Aligned_cols=101 Identities=13% Similarity=0.079 Sum_probs=61.2
Q ss_pred eEEEEEeCCCCCCH-----------------HHHHHHHHHHHHhccCccEEEEee--ccccC---------------ch-
Q 017884 142 VKLVLLDEADAMTK-----------------DAQFALRRVIEKYTKNTRFALICN--QVNKI---------------IP- 186 (364)
Q Consensus 142 ~~viiiDe~~~l~~-----------------~~~~~L~~~le~~~~~~~~Il~~~--~~~~l---------------~~- 186 (364)
+-++.||++..+.. .....+++++..--....+|++.+ ..... .+
T Consensus 316 kVLvaID~~n~l~~~T~~k~~~~~~v~P~dl~li~~~~~~i~ndwt~g~vi~a~s~~~~~~a~~h~gv~~y~pr~llg~e 395 (461)
T KOG3928|consen 316 KVLVAIDNFNSLFTVTAYKSEDNKPVTPLDLTLIHLLRDIISNDWTFGSVIMAISGVTTPSAFGHLGVAPYVPRKLLGEE 395 (461)
T ss_pred cEEEEEcCcchheeeeeeeccccCcCCchhhhHHHHHHHHHhcccccceEEEEecccccchhccccccccCCchHhcCcc
Confidence 55889999887742 113556666665444445566554 11111 11
Q ss_pred --hhhccceEEEecCCChHHHHHHHHHHHHHcCC--CC-CHHHHHHHHHHcCCCHHHHHHH
Q 017884 187 --ALQSRCTRFRFAPLEPVHVTERLKHVIEAEGL--DV-TEGGLAALVRLCNGDMRKALNI 242 (364)
Q Consensus 187 --~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~--~i-~~~~~~~l~~~~~g~~r~a~~~ 242 (364)
.....+..++.++++.+|...++.-+..+.=+ .+ +++....+.-.++||++.....
T Consensus 396 gfe~lqpf~pi~v~nYt~~E~~~~i~YYl~~nwl~kkv~~Ee~~kql~fLSngNP~l~~~l 456 (461)
T KOG3928|consen 396 GFEALQPFVPIEVENYTLDEFEALIDYYLQSNWLLKKVPGEENIKQLYFLSNGNPSLMERL 456 (461)
T ss_pred chhhccCcCccccCCCCHHHHHHHHHHHHHhhHHHhhcCcccchhhhhhhcCCCHHHHHHH
Confidence 11223667899999999998887766554211 12 3677788888899999544433
No 399
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=97.08 E-value=0.00057 Score=53.50 Aligned_cols=25 Identities=40% Similarity=0.674 Sum_probs=23.0
Q ss_pred CCcEEEeCCCCccHHHHHHHHHHHH
Q 017884 74 LPHLLLYGPPGTGKTSTILAVARKL 98 (364)
Q Consensus 74 ~~~lll~G~~G~GKt~la~~l~~~l 98 (364)
.|++|++|-||+|||+++.+++...
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~ 31 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEKT 31 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHHh
Confidence 4789999999999999999999775
No 400
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=97.07 E-value=0.0037 Score=50.38 Aligned_cols=22 Identities=36% Similarity=0.505 Sum_probs=21.0
Q ss_pred EEEeCCCCccHHHHHHHHHHHH
Q 017884 77 LLLYGPPGTGKTSTILAVARKL 98 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l 98 (364)
++++|++|+|||++++.++..+
T Consensus 2 i~l~G~~GsGKstla~~la~~l 23 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKAL 23 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHh
Confidence 7899999999999999999987
No 401
>PRK14737 gmk guanylate kinase; Provisional
Probab=97.07 E-value=0.0029 Score=52.89 Aligned_cols=22 Identities=23% Similarity=0.416 Sum_probs=20.5
Q ss_pred EEEeCCCCccHHHHHHHHHHHH
Q 017884 77 LLLYGPPGTGKTSTILAVARKL 98 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l 98 (364)
++|.||+|+|||++++.+.+..
T Consensus 7 ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 7 FIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred EEEECCCCCCHHHHHHHHHhcC
Confidence 7999999999999999998874
No 402
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.06 E-value=0.007 Score=54.87 Aligned_cols=38 Identities=21% Similarity=0.298 Sum_probs=27.1
Q ss_pred HHHHHHh-cCCCCc--EEEeCCCCccHHHHHHHHHHHHcCC
Q 017884 64 TIDRLTS-ENRLPH--LLLYGPPGTGKTSTILAVARKLYGA 101 (364)
Q Consensus 64 ~l~~~~~-~~~~~~--lll~G~~G~GKt~la~~l~~~l~~~ 101 (364)
.|..++. .|-++. +.++||||+|||+++..++......
T Consensus 42 ~LD~~Lg~GGlp~G~iteI~Gp~GsGKTtLal~~~~~~~~~ 82 (325)
T cd00983 42 SLDIALGIGGYPKGRIIEIYGPESSGKTTLALHAIAEAQKL 82 (325)
T ss_pred HHHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 3445555 343333 6999999999999999988776443
No 403
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=97.05 E-value=0.011 Score=49.59 Aligned_cols=143 Identities=18% Similarity=0.191 Sum_probs=66.5
Q ss_pred EEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCCCChHHHHHHHHHHHhcCccccCCccceEEEEEeCCCCC---
Q 017884 77 LLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAM--- 153 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l--- 153 (364)
++|+||+|+|||.++-.+++.. +..++..+... ...+.........+..+. +-++ +++||-..-
T Consensus 4 ~~i~GpT~tGKt~~ai~lA~~~-----g~pvI~~Driq-----~y~~l~v~Sgrp~~~el~--~~~R-iyL~~r~l~~G~ 70 (233)
T PF01745_consen 4 YLIVGPTGTGKTALAIALAQKT-----GAPVISLDRIQ-----CYPELSVGSGRPTPSELK--GTRR-IYLDDRPLSDGI 70 (233)
T ss_dssp EEEE-STTSSHHHHHHHHHHHH-------EEEEE-SGG-----G-GGGTTTTT---SGGGT--T-EE-EES----GGG-S
T ss_pred EEEECCCCCChhHHHHHHHHHh-----CCCEEEeccee-----cccccccccCCCCHHHHc--ccce-eeeccccccCCC
Confidence 6999999999999999999997 33444433211 000000000000000011 1244 777763222
Q ss_pred -C-HHHHHHHHHHHHHhccCccEEEEeeccccCchhhhcc-----c--eEEEecCCChHHHHHHHHHHHHHc--CCCCCH
Q 017884 154 -T-KDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSR-----C--TRFRFAPLEPVHVTERLKHVIEAE--GLDVTE 222 (364)
Q Consensus 154 -~-~~~~~~L~~~le~~~~~~~~Il~~~~~~~l~~~l~sr-----~--~~i~~~~~~~~~~~~~l~~~~~~~--~~~i~~ 222 (364)
+ +++.+.|...+.++....-+|+-+-+.+-+..-.+++ + .+..++-++.+.......+++++. .-.=.+
T Consensus 71 i~a~ea~~~Li~~v~~~~~~~~~IlEGGSISLl~~m~~~~~w~~~f~w~i~rl~l~d~~~f~~ra~~Rv~~ML~p~~~~~ 150 (233)
T PF01745_consen 71 INAEEAHERLISEVNSYSAHGGLILEGGSISLLNCMAQDPYWSLDFRWHIRRLRLPDEEVFMARAKRRVRQMLRPDSSGP 150 (233)
T ss_dssp --HHHHHHHHHHHHHTTTTSSEEEEEE--HHHHHHHHH-TTTSSSSEEEEEE-----HHHHHHHHHHHHHHHHS--SSS-
T ss_pred cCHHHHHHHHHHHHHhccccCceEEeCchHHHHHHHHhcccccCCCeEEEEEEECCChHHHHHHHHHHHHHhcCCCCCCC
Confidence 2 3456778888888887667888775554333322222 2 345565566666665555555432 112235
Q ss_pred HHHHHHHHHc
Q 017884 223 GGLAALVRLC 232 (364)
Q Consensus 223 ~~~~~l~~~~ 232 (364)
..+++|+...
T Consensus 151 Sll~EL~~lW 160 (233)
T PF01745_consen 151 SLLEELVALW 160 (233)
T ss_dssp -HHHHHHHHH
T ss_pred cHHHHHHHHH
Confidence 6677777665
No 404
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.05 E-value=0.0015 Score=60.22 Aligned_cols=29 Identities=24% Similarity=0.361 Sum_probs=24.3
Q ss_pred CcEEEeCCCCccHHHHHHHHHHHHcCCCC
Q 017884 75 PHLLLYGPPGTGKTSTILAVARKLYGAQY 103 (364)
Q Consensus 75 ~~lll~G~~G~GKt~la~~l~~~l~~~~~ 103 (364)
.-.+|+||+|+|||++++.+++.+...++
T Consensus 170 QR~lIvgppGvGKTTLaK~Ian~I~~nhF 198 (416)
T PRK09376 170 QRGLIVAPPKAGKTVLLQNIANSITTNHP 198 (416)
T ss_pred ceEEEeCCCCCChhHHHHHHHHHHHhhcC
Confidence 34899999999999999999998865433
No 405
>PRK09354 recA recombinase A; Provisional
Probab=97.03 E-value=0.0091 Score=54.60 Aligned_cols=38 Identities=24% Similarity=0.307 Sum_probs=27.1
Q ss_pred HHHHHHh-cCCCCc--EEEeCCCCccHHHHHHHHHHHHcCC
Q 017884 64 TIDRLTS-ENRLPH--LLLYGPPGTGKTSTILAVARKLYGA 101 (364)
Q Consensus 64 ~l~~~~~-~~~~~~--lll~G~~G~GKt~la~~l~~~l~~~ 101 (364)
.|..++. .|-+.. +.|+||+|+|||+++..++......
T Consensus 47 ~LD~~LG~GGip~G~IteI~G~~GsGKTtLal~~~~~~~~~ 87 (349)
T PRK09354 47 ALDIALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQKA 87 (349)
T ss_pred HHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 4445565 443333 6999999999999999888765443
No 406
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=97.03 E-value=0.0056 Score=51.47 Aligned_cols=22 Identities=45% Similarity=0.860 Sum_probs=20.8
Q ss_pred EEEeCCCCccHHHHHHHHHHHH
Q 017884 77 LLLYGPPGTGKTSTILAVARKL 98 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l 98 (364)
++|.|+||+|||++++.|++.+
T Consensus 2 I~i~G~pGsGKst~a~~La~~~ 23 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKY 23 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7899999999999999999985
No 407
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.02 E-value=0.0072 Score=49.98 Aligned_cols=41 Identities=22% Similarity=0.279 Sum_probs=29.8
Q ss_pred eEEEEEeCC-CCCCHHHHHHHHHHHHHhc-cCccEEEEeeccc
Q 017884 142 VKLVLLDEA-DAMTKDAQFALRRVIEKYT-KNTRFALICNQVN 182 (364)
Q Consensus 142 ~~viiiDe~-~~l~~~~~~~L~~~le~~~-~~~~~Il~~~~~~ 182 (364)
++++++||. ..+.......+.+.+.+.. ....+|++++...
T Consensus 108 p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~ 150 (176)
T cd03238 108 GTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLD 150 (176)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 789999995 5566777788888887754 3455777776654
No 408
>PRK06696 uridine kinase; Validated
Probab=97.01 E-value=0.0013 Score=56.75 Aligned_cols=43 Identities=14% Similarity=0.209 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHhc--CCCCc-EEEeCCCCccHHHHHHHHHHHHcCC
Q 017884 59 RDIVDTIDRLTSE--NRLPH-LLLYGPPGTGKTSTILAVARKLYGA 101 (364)
Q Consensus 59 ~~~~~~l~~~~~~--~~~~~-lll~G~~G~GKt~la~~l~~~l~~~ 101 (364)
..+++.|...+.. ...+. +.+.|++|+||||+|+.++..+...
T Consensus 4 ~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~ 49 (223)
T PRK06696 4 KQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEIKKR 49 (223)
T ss_pred HHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 4556666666643 22233 7999999999999999999998543
No 409
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=97.00 E-value=0.0051 Score=51.85 Aligned_cols=42 Identities=12% Similarity=0.273 Sum_probs=30.5
Q ss_pred ceEEEEEeCC-CCCCHHHHHHHHHHHHHhcc-CccEEEEeeccc
Q 017884 141 SVKLVLLDEA-DAMTKDAQFALRRVIEKYTK-NTRFALICNQVN 182 (364)
Q Consensus 141 ~~~viiiDe~-~~l~~~~~~~L~~~le~~~~-~~~~Il~~~~~~ 182 (364)
++.++++||. ..+.......+.+.+.+... ...+|++++...
T Consensus 129 ~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~ 172 (194)
T cd03213 129 NPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPS 172 (194)
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCch
Confidence 5789999995 55667778888888887643 445677776554
No 410
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=96.99 E-value=0.0055 Score=52.32 Aligned_cols=41 Identities=12% Similarity=0.294 Sum_probs=29.9
Q ss_pred ceEEEEEeCC-CCCCHHHHHHHHHHHHHhcc--CccEEEEeecc
Q 017884 141 SVKLVLLDEA-DAMTKDAQFALRRVIEKYTK--NTRFALICNQV 181 (364)
Q Consensus 141 ~~~viiiDe~-~~l~~~~~~~L~~~le~~~~--~~~~Il~~~~~ 181 (364)
.+++|+-||- ..|..+....++.++.+... ...+|++|.++
T Consensus 160 ~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~ 203 (226)
T COG1136 160 NPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDP 203 (226)
T ss_pred CCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCH
Confidence 6889999994 66667777777787777643 45677888654
No 411
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.99 E-value=0.0013 Score=45.24 Aligned_cols=22 Identities=27% Similarity=0.540 Sum_probs=20.6
Q ss_pred EEEeCCCCccHHHHHHHHHHHH
Q 017884 77 LLLYGPPGTGKTSTILAVARKL 98 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l 98 (364)
+.+.|++|+|||++++.+++.+
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5789999999999999999997
No 412
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=96.98 E-value=0.0026 Score=58.90 Aligned_cols=27 Identities=26% Similarity=0.420 Sum_probs=23.6
Q ss_pred CcEEEeCCCCccHHHHHHHHHHHHcCC
Q 017884 75 PHLLLYGPPGTGKTSTILAVARKLYGA 101 (364)
Q Consensus 75 ~~lll~G~~G~GKt~la~~l~~~l~~~ 101 (364)
..++|.||+|+|||++++.+++.+...
T Consensus 169 q~~~IvG~~g~GKTtL~~~i~~~I~~n 195 (415)
T TIGR00767 169 QRGLIVAPPKAGKTVLLQKIAQAITRN 195 (415)
T ss_pred CEEEEECCCCCChhHHHHHHHHhhccc
Confidence 348999999999999999999987544
No 413
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=96.97 E-value=0.0099 Score=54.63 Aligned_cols=50 Identities=28% Similarity=0.557 Sum_probs=37.9
Q ss_pred HHHHHHHHhcCCCCc--EEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCC
Q 017884 62 VDTIDRLTSENRLPH--LLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASD 114 (364)
Q Consensus 62 ~~~l~~~~~~~~~~~--lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~ 114 (364)
...|.+.+..|-.+. +|+-|.||.||||+...++..+.... .++++++..
T Consensus 79 ~~EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~---~vLYVsGEE 130 (456)
T COG1066 79 IEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRG---KVLYVSGEE 130 (456)
T ss_pred hHHHHhhhcCCcccccEEEEccCCCCCHHHHHHHHHHHHHhcC---cEEEEeCCc
Confidence 346677777775555 79999999999999999999886443 566766654
No 414
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=96.96 E-value=0.012 Score=48.17 Aligned_cols=104 Identities=24% Similarity=0.257 Sum_probs=56.5
Q ss_pred cEEEeCCCCccHHHHHHHHHHHHcCCCCC------CcEEEEeCCCCCChHHHHHHHHHHHhcCccccCC----------c
Q 017884 76 HLLLYGPPGTGKTSTILAVARKLYGAQYH------NMILELNASDDRGIDVVRQQIQDFASTQSFSFGV----------K 139 (364)
Q Consensus 76 ~lll~G~~G~GKt~la~~l~~~l~~~~~~------~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~----------~ 139 (364)
.+.|.||.|+||||+++.++..+...... ..+..+..........+.+.+... ....++.+. .
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~~-~~~~LS~G~~~rv~laral~ 107 (166)
T cd03223 29 RLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYLPLGTLREQLIYP-WDDVLSGGEQQRLAFARLLL 107 (166)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCccccccHHHHhhcc-CCCCCCHHHHHHHHHHHHHH
Confidence 38999999999999999998875321110 011111111100001222222110 000000000 1
Q ss_pred cceEEEEEeCCC-CCCHHHHHHHHHHHHHhccCccEEEEeeccc
Q 017884 140 ASVKLVLLDEAD-AMTKDAQFALRRVIEKYTKNTRFALICNQVN 182 (364)
Q Consensus 140 ~~~~viiiDe~~-~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~ 182 (364)
.+++++++||.. .+.......+.+++.+. ...+|++++...
T Consensus 108 ~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~ 149 (166)
T cd03223 108 HKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPS 149 (166)
T ss_pred cCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChh
Confidence 257899999964 56677788888888876 345777776653
No 415
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=96.96 E-value=0.0036 Score=62.86 Aligned_cols=42 Identities=19% Similarity=0.352 Sum_probs=32.3
Q ss_pred ceEEEEEeCCC-CCCHHHHHHHHHHHHHhccCccEEEEeeccc
Q 017884 141 SVKLVLLDEAD-AMTKDAQFALRRVIEKYTKNTRFALICNQVN 182 (364)
Q Consensus 141 ~~~viiiDe~~-~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~ 182 (364)
+++|+++||+- .+.......+...|.+......+|++++...
T Consensus 627 ~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ 669 (709)
T COG2274 627 KPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLS 669 (709)
T ss_pred CCCEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccch
Confidence 68899999984 4456677778888888777777888887654
No 416
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=96.96 E-value=0.0042 Score=49.96 Aligned_cols=25 Identities=32% Similarity=0.554 Sum_probs=22.2
Q ss_pred EEEeCCCCccHHHHHHHHHHHHcCC
Q 017884 77 LLLYGPPGTGKTSTILAVARKLYGA 101 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l~~~ 101 (364)
++++|+||+|||++++.++..+...
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~~ 26 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQR 26 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 5899999999999999999998533
No 417
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=96.95 E-value=0.034 Score=44.24 Aligned_cols=22 Identities=36% Similarity=0.712 Sum_probs=20.7
Q ss_pred EEEeCCCCccHHHHHHHHHHHH
Q 017884 77 LLLYGPPGTGKTSTILAVARKL 98 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l 98 (364)
+.|.|++|+|||++++.++..+
T Consensus 2 I~i~G~~GsGKst~a~~la~~~ 23 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKL 23 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5799999999999999999987
No 418
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.95 E-value=0.0048 Score=50.94 Aligned_cols=27 Identities=37% Similarity=0.390 Sum_probs=22.9
Q ss_pred EEEeCCCCccHHHHHHHHHHHHcCCCC
Q 017884 77 LLLYGPPGTGKTSTILAVARKLYGAQY 103 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l~~~~~ 103 (364)
+++.|++|+|||+++..++..+...+.
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~g~ 29 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKGK 29 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCC
Confidence 589999999999999999988765443
No 419
>PRK00131 aroK shikimate kinase; Reviewed
Probab=96.94 E-value=0.0011 Score=54.62 Aligned_cols=24 Identities=33% Similarity=0.587 Sum_probs=22.3
Q ss_pred CcEEEeCCCCccHHHHHHHHHHHH
Q 017884 75 PHLLLYGPPGTGKTSTILAVARKL 98 (364)
Q Consensus 75 ~~lll~G~~G~GKt~la~~l~~~l 98 (364)
..++|+|++|+|||++++.+++.+
T Consensus 5 ~~i~l~G~~GsGKstla~~La~~l 28 (175)
T PRK00131 5 PNIVLIGFMGAGKSTIGRLLAKRL 28 (175)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHh
Confidence 348999999999999999999997
No 420
>KOG2383 consensus Predicted ATPase [General function prediction only]
Probab=96.94 E-value=0.0018 Score=58.92 Aligned_cols=95 Identities=20% Similarity=0.280 Sum_probs=52.3
Q ss_pred EEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCCCChHHHHHHHHHHHhcCc-----------cc--------cC
Q 017884 77 LLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQS-----------FS--------FG 137 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-----------~~--------~~ 137 (364)
++|||.-|||||.+.-.+...+.+ .+...-+.+... .-.+...+.+...... +. +.
T Consensus 117 lYlYG~VGcGKTmLMDlFy~~~~~-i~rkqRvHFh~f----M~~VH~r~H~~k~~~~~~~~~~a~~~~~Dpl~~vA~eIa 191 (467)
T KOG2383|consen 117 LYLYGSVGCGKTMLMDLFYDALPP-IWRKQRVHFHGF----MLSVHKRMHELKQEQGAEKPGYAKSWEIDPLPVVADEIA 191 (467)
T ss_pred EEEecccCcchhHHHHHHhhcCCc-hhhhhhhhHHHH----HHHHHHHHHHHHHhccccCccccccccCCccHHHHHHHh
Confidence 899999999999999988876533 221111111110 0001111000000000 00 01
Q ss_pred CccceEEEEEeCCCCCCHHHHHHHHHHHHHhccCccEEEEe
Q 017884 138 VKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALIC 178 (364)
Q Consensus 138 ~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~ 178 (364)
. .-.++.+||++.-.-...-.|.++++..-.+.+++++|
T Consensus 192 ~--ea~lLCFDEfQVTDVADAmiL~rLf~~Lf~~GvVlvAT 230 (467)
T KOG2383|consen 192 E--EAILLCFDEFQVTDVADAMILKRLFEHLFKNGVVLVAT 230 (467)
T ss_pred h--hceeeeechhhhhhHHHHHHHHHHHHHHHhCCeEEEEe
Confidence 1 35699999998776555667788888776666666655
No 421
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.94 E-value=0.00072 Score=52.61 Aligned_cols=22 Identities=36% Similarity=0.616 Sum_probs=20.7
Q ss_pred EEEeCCCCccHHHHHHHHHHHH
Q 017884 77 LLLYGPPGTGKTSTILAVARKL 98 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l 98 (364)
++|.|++|+||||+++.|++.+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 5799999999999999999996
No 422
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=96.94 E-value=0.016 Score=53.58 Aligned_cols=26 Identities=27% Similarity=0.543 Sum_probs=22.9
Q ss_pred CcEEEeCCCCccHHHHHHHHHHHHcC
Q 017884 75 PHLLLYGPPGTGKTSTILAVARKLYG 100 (364)
Q Consensus 75 ~~lll~G~~G~GKt~la~~l~~~l~~ 100 (364)
..++|.||+|+||||+++++...+..
T Consensus 123 g~ili~G~tGSGKTT~l~al~~~i~~ 148 (343)
T TIGR01420 123 GLILVTGPTGSGKSTTLASMIDYINK 148 (343)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCc
Confidence 45899999999999999999988753
No 423
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=96.93 E-value=0.0073 Score=59.35 Aligned_cols=40 Identities=15% Similarity=0.226 Sum_probs=28.2
Q ss_pred ceEEEEEeCCCC-CCHHHHHHHHHHHHHhccCccEEEEeec
Q 017884 141 SVKLVLLDEADA-MTKDAQFALRRVIEKYTKNTRFALICNQ 180 (364)
Q Consensus 141 ~~~viiiDe~~~-l~~~~~~~L~~~le~~~~~~~~Il~~~~ 180 (364)
++.++++||+-. +..+....+.+.+.+...+..+|++++.
T Consensus 488 ~~~iliLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiItHr 528 (529)
T TIGR02868 488 DAPILLLDEPTEHLDAGTESELLEDLLAALSGKTVVVITHH 528 (529)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEecC
Confidence 677999999855 5566677777878776555556666653
No 424
>COG3910 Predicted ATPase [General function prediction only]
Probab=96.93 E-value=0.017 Score=47.42 Aligned_cols=49 Identities=18% Similarity=0.295 Sum_probs=33.4
Q ss_pred CCCCcchhccHHHHHHHHHHHhcCCCCcEEEeCCCCccHHHHHHHHHHHH
Q 017884 49 PQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKL 98 (364)
Q Consensus 49 p~~~~~~vg~~~~~~~l~~~~~~~~~~~lll~G~~G~GKt~la~~l~~~l 98 (364)
|.+|.+..-.-.+++.+...+. -+.|..+|.|+.|+||+|+..+++...
T Consensus 13 ve~~~eYp~slPa~r~l~~~Le-F~apIT~i~GENGsGKSTLLEaiA~~~ 61 (233)
T COG3910 13 VESFEEYPFSLPAFRHLEERLE-FRAPITFITGENGSGKSTLLEAIAAGM 61 (233)
T ss_pred ccchhhCcccchHHHhhhhhcc-ccCceEEEEcCCCccHHHHHHHHHhhc
Confidence 4445555444455555555333 234556999999999999999999765
No 425
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=96.92 E-value=0.0011 Score=57.38 Aligned_cols=37 Identities=38% Similarity=0.595 Sum_probs=25.3
Q ss_pred HHHHHHHHHHhcCCCCcEEEeCCCCccHHHHHHHHHHHH
Q 017884 60 DIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKL 98 (364)
Q Consensus 60 ~~~~~l~~~~~~~~~~~lll~G~~G~GKt~la~~l~~~l 98 (364)
.....+...+.... -.+++||||||||+++..+...+
T Consensus 5 ~Q~~Ai~~~~~~~~--~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 5 SQREAIQSALSSNG--ITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp HHHHHHHHHCTSSE---EEEE-STTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCC--CEEEECCCCCChHHHHHHHHHHh
Confidence 34445555554432 27999999999999888887776
No 426
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.92 E-value=0.0027 Score=58.33 Aligned_cols=33 Identities=21% Similarity=0.299 Sum_probs=26.7
Q ss_pred CCCCcEEEeCCCCccHHHHHHHHHHHHcCCCCC
Q 017884 72 NRLPHLLLYGPPGTGKTSTILAVARKLYGAQYH 104 (364)
Q Consensus 72 ~~~~~lll~G~~G~GKt~la~~l~~~l~~~~~~ 104 (364)
++....+|+||+|+|||++++.+++.+......
T Consensus 131 GkGQR~LIvG~pGtGKTTLl~~la~~i~~~~~d 163 (380)
T PRK12608 131 GKGQRGLIVAPPRAGKTVLLQQIAAAVAANHPE 163 (380)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHHHhcCCC
Confidence 444568999999999999999999998654333
No 427
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=96.91 E-value=0.0057 Score=55.60 Aligned_cols=27 Identities=37% Similarity=0.453 Sum_probs=23.3
Q ss_pred EEEeCCCCccHHHHHHHHHHHHcCCCC
Q 017884 77 LLLYGPPGTGKTSTILAVARKLYGAQY 103 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l~~~~~ 103 (364)
+.|.||+|+||||++..++..+...+.
T Consensus 117 i~lvGpnGsGKTTt~~kLA~~l~~~g~ 143 (318)
T PRK10416 117 ILVVGVNGVGKTTTIGKLAHKYKAQGK 143 (318)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHhcCC
Confidence 689999999999999999998864443
No 428
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=96.89 E-value=0.013 Score=52.93 Aligned_cols=24 Identities=29% Similarity=0.652 Sum_probs=21.9
Q ss_pred cEEEeCCCCccHHHHHHHHHHHHc
Q 017884 76 HLLLYGPPGTGKTSTILAVARKLY 99 (364)
Q Consensus 76 ~lll~G~~G~GKt~la~~l~~~l~ 99 (364)
.+++.||+|+|||+++..+++.+.
T Consensus 6 ~i~i~GptgsGKt~la~~la~~~~ 29 (307)
T PRK00091 6 VIVIVGPTASGKTALAIELAKRLN 29 (307)
T ss_pred EEEEECCCCcCHHHHHHHHHHhCC
Confidence 379999999999999999999874
No 429
>PRK14527 adenylate kinase; Provisional
Probab=96.89 E-value=0.0092 Score=50.14 Aligned_cols=24 Identities=33% Similarity=0.646 Sum_probs=21.8
Q ss_pred cEEEeCCCCccHHHHHHHHHHHHc
Q 017884 76 HLLLYGPPGTGKTSTILAVARKLY 99 (364)
Q Consensus 76 ~lll~G~~G~GKt~la~~l~~~l~ 99 (364)
.+++.||||+||||+++.+++.+.
T Consensus 8 ~i~i~G~pGsGKsT~a~~La~~~~ 31 (191)
T PRK14527 8 VVIFLGPPGAGKGTQAERLAQELG 31 (191)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 379999999999999999998874
No 430
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.89 E-value=0.0033 Score=52.64 Aligned_cols=42 Identities=14% Similarity=0.364 Sum_probs=29.2
Q ss_pred ceEEEEEeCC-CCCCHHHHHHHHHHHHHhccCccEEEEeeccc
Q 017884 141 SVKLVLLDEA-DAMTKDAQFALRRVIEKYTKNTRFALICNQVN 182 (364)
Q Consensus 141 ~~~viiiDe~-~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~ 182 (364)
.+.|+++||- -.|.+-....+-+++.+...+..+|++|.++.
T Consensus 167 ~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnmq 209 (253)
T COG1117 167 KPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQ 209 (253)
T ss_pred CCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCHH
Confidence 5789999995 44445555666677777767777888886543
No 431
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=96.87 E-value=0.002 Score=51.79 Aligned_cols=22 Identities=32% Similarity=0.597 Sum_probs=20.5
Q ss_pred EEEeCCCCccHHHHHHHHHHHH
Q 017884 77 LLLYGPPGTGKTSTILAVARKL 98 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l 98 (364)
++|+|+||+||||+++.+++.+
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhc
Confidence 5899999999999999999985
No 432
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=96.87 E-value=0.017 Score=47.37 Aligned_cols=21 Identities=24% Similarity=0.351 Sum_probs=19.4
Q ss_pred EEEeCCCCccHHHHHHHHHHH
Q 017884 77 LLLYGPPGTGKTSTILAVARK 97 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~ 97 (364)
+++.|++|+|||++|..++..
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~ 22 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE 22 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 589999999999999999876
No 433
>CHL00195 ycf46 Ycf46; Provisional
Probab=96.87 E-value=0.033 Score=53.69 Aligned_cols=117 Identities=17% Similarity=0.268 Sum_probs=84.6
Q ss_pred eEEEEEeCCCCCCH--HHHHHHHHHHHHhccCc-cEEEEeeccccCchhhhccceEEEecCCChHHHHHHHHHHHHHcCC
Q 017884 142 VKLVLLDEADAMTK--DAQFALRRVIEKYTKNT-RFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGL 218 (364)
Q Consensus 142 ~~viiiDe~~~l~~--~~~~~L~~~le~~~~~~-~~Il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~ 218 (364)
+.++++.|+|.+.. .....|.++........ .+|+++ ....++..|.+-+.++.|+-|+.+++..++...+...+.
T Consensus 82 ~~~~vl~d~h~~~~~~~~~r~l~~l~~~~~~~~~~~i~~~-~~~~~p~el~~~~~~~~~~lP~~~ei~~~l~~~~~~~~~ 160 (489)
T CHL00195 82 PALFLLKDFNRFLNDISISRKLRNLSRILKTQPKTIIIIA-SELNIPKELKDLITVLEFPLPTESEIKKELTRLIKSLNI 160 (489)
T ss_pred CcEEEEecchhhhcchHHHHHHHHHHHHHHhCCCEEEEEc-CCCCCCHHHHhceeEEeecCcCHHHHHHHHHHHHHhcCC
Confidence 56999999999943 34445555444433333 344444 345678888888899999999999999999998887788
Q ss_pred CCCHHHHHHHHHHcCC-CHHHHHHHHHHHHHhcccCchHHHH
Q 017884 219 DVTEGGLAALVRLCNG-DMRKALNILQSTHMASQQITEEAVY 259 (364)
Q Consensus 219 ~i~~~~~~~l~~~~~g-~~r~a~~~l~~~~~~~~~i~~~~v~ 259 (364)
.++++.++.+++.+.| +...+.+.+.......+.++.+++.
T Consensus 161 ~~~~~~~~~l~~~~~gls~~~~~~~~~~~~~~~~~~~~~~~~ 202 (489)
T CHL00195 161 KIDSELLENLTRACQGLSLERIRRVLSKIIATYKTIDENSIP 202 (489)
T ss_pred CCCHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCCChhhHH
Confidence 9999999999998755 4556666666554455667766544
No 434
>PRK02496 adk adenylate kinase; Provisional
Probab=96.86 E-value=0.019 Score=47.89 Aligned_cols=24 Identities=38% Similarity=0.787 Sum_probs=21.7
Q ss_pred cEEEeCCCCccHHHHHHHHHHHHc
Q 017884 76 HLLLYGPPGTGKTSTILAVARKLY 99 (364)
Q Consensus 76 ~lll~G~~G~GKt~la~~l~~~l~ 99 (364)
.++|.||||+|||++++.+++.+.
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~~ 26 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHLH 26 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 378999999999999999999873
No 435
>PRK00279 adk adenylate kinase; Reviewed
Probab=96.86 E-value=0.011 Score=50.72 Aligned_cols=23 Identities=43% Similarity=0.723 Sum_probs=21.3
Q ss_pred EEEeCCCCccHHHHHHHHHHHHc
Q 017884 77 LLLYGPPGTGKTSTILAVARKLY 99 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l~ 99 (364)
++++|+||+||||+++.+++.+.
T Consensus 3 I~v~G~pGsGKsT~a~~la~~~~ 25 (215)
T PRK00279 3 LILLGPPGAGKGTQAKFIAEKYG 25 (215)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 78999999999999999999873
No 436
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=96.85 E-value=0.097 Score=44.28 Aligned_cols=24 Identities=25% Similarity=0.433 Sum_probs=21.2
Q ss_pred CCcEEEeCCCCccHHHHHHHHHHH
Q 017884 74 LPHLLLYGPPGTGKTSTILAVARK 97 (364)
Q Consensus 74 ~~~lll~G~~G~GKt~la~~l~~~ 97 (364)
.+.+++.|++|+|||++++.+...
T Consensus 41 ~~~I~iiG~~g~GKStLl~~l~~~ 64 (204)
T cd01878 41 IPTVALVGYTNAGKSTLFNALTGA 64 (204)
T ss_pred CCeEEEECCCCCCHHHHHHHHhcc
Confidence 456899999999999999999875
No 437
>PF14840 DNA_pol3_delt_C: Processivity clamp loader gamma complex DNA pol III C-term; PDB: 3GLG_F 1XXH_A 3GLF_F 1JQJ_C 3GLI_F.
Probab=96.85 E-value=0.016 Score=44.87 Aligned_cols=82 Identities=11% Similarity=0.079 Sum_probs=65.5
Q ss_pred HHHHHHHHhccHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc----------------------------------CC
Q 017884 271 EQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKI----------------------------------KM 316 (364)
Q Consensus 271 ~~l~~~l~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~~~~----------------------------------~~ 316 (364)
|.++|+++.++...+.++++.+. ..|.+|..++..+.+.++.+ ++
T Consensus 2 F~L~Da~L~G~~~ra~riL~~L~-~Eg~ep~~lLw~L~rElr~L~~l~~~~~~~~l~~~~~~~rIW~~Rq~l~~~Al~Rl 80 (125)
T PF14840_consen 2 FQLIDALLAGDAKRALRILQGLQ-AEGVEPPILLWALQRELRLLIQLKQALAQQPLQQLFKQLRIWQKRQPLYQQALQRL 80 (125)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHH-HTT--HHHHHHHHHHHHHHHHHHHHHTTTS-HHHHHHHHTT-CCHHHHHHHHHHHS
T ss_pred CcHHHHHHCCCHHHHHHHHHHHH-HCCccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHcCCCHhHHHHHHHHHHcC
Confidence 78999999999999999999998 99999999999998888765 56
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCC--ChHHHHHHHHHHHH
Q 017884 317 PSDVRVRLMNDLADIEYRLSFGC--NDKLQLGSIISTFT 353 (364)
Q Consensus 317 ~~~~~~~i~~~l~~~~~~l~~~~--~~~~~l~~l~~~l~ 353 (364)
+...+..++..+..+|..+|... ++-..|+.+...+|
T Consensus 81 s~~~L~~ll~~~a~iD~~iKg~~~~~~W~~L~~L~L~lc 119 (125)
T PF14840_consen 81 SLQQLEQLLQLLAQIDRAIKGNYQGDPWDELEQLSLLLC 119 (125)
T ss_dssp -HHHHHHHHHHHHHHHHHHHTSTTSTHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHc
Confidence 77778899999999999998764 55666666666555
No 438
>PRK06547 hypothetical protein; Provisional
Probab=96.84 E-value=0.0023 Score=52.74 Aligned_cols=31 Identities=26% Similarity=0.303 Sum_probs=24.3
Q ss_pred HhcCCCCcEEEeCCCCccHHHHHHHHHHHHc
Q 017884 69 TSENRLPHLLLYGPPGTGKTSTILAVARKLY 99 (364)
Q Consensus 69 ~~~~~~~~lll~G~~G~GKt~la~~l~~~l~ 99 (364)
+..+....+++.|++|+|||++++.+++.+.
T Consensus 10 ~~~~~~~~i~i~G~~GsGKTt~a~~l~~~~~ 40 (172)
T PRK06547 10 LCGGGMITVLIDGRSGSGKTTLAGALAARTG 40 (172)
T ss_pred hhcCCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3344333478999999999999999999863
No 439
>PRK05973 replicative DNA helicase; Provisional
Probab=96.84 E-value=0.01 Score=51.36 Aligned_cols=26 Identities=35% Similarity=0.369 Sum_probs=22.0
Q ss_pred EEEeCCCCccHHHHHHHHHHHHcCCC
Q 017884 77 LLLYGPPGTGKTSTILAVARKLYGAQ 102 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l~~~~ 102 (364)
++|.|+||+|||+++..++......+
T Consensus 67 ~LIaG~PG~GKT~lalqfa~~~a~~G 92 (237)
T PRK05973 67 VLLGARPGHGKTLLGLELAVEAMKSG 92 (237)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHhcC
Confidence 79999999999999999988764443
No 440
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=96.84 E-value=0.012 Score=50.92 Aligned_cols=46 Identities=26% Similarity=0.309 Sum_probs=30.2
Q ss_pred HHHHHhcCCCCc--EEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeC
Q 017884 65 IDRLTSENRLPH--LLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNA 112 (364)
Q Consensus 65 l~~~~~~~~~~~--lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~ 112 (364)
|...+..|-.+. +++.|+||+|||+++..++......+ ..++.++.
T Consensus 9 LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g--~~~~~is~ 56 (229)
T TIGR03881 9 LDKLLEGGIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDG--DPVIYVTT 56 (229)
T ss_pred HHHhhcCCCcCCeEEEEECCCCCChHHHHHHHHHHHHhcC--CeEEEEEc
Confidence 444454443333 79999999999999998876544333 34455554
No 441
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=96.84 E-value=0.02 Score=53.20 Aligned_cols=25 Identities=20% Similarity=0.290 Sum_probs=22.5
Q ss_pred cEEEeCCCCccHHHHHHHHHHHHcC
Q 017884 76 HLLLYGPPGTGKTSTILAVARKLYG 100 (364)
Q Consensus 76 ~lll~G~~G~GKt~la~~l~~~l~~ 100 (364)
.++++||+|+||||++.++.+.+..
T Consensus 151 lilI~G~TGSGKTT~l~al~~~i~~ 175 (372)
T TIGR02525 151 LGLICGETGSGKSTLAASIYQHCGE 175 (372)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHh
Confidence 4899999999999999999998753
No 442
>PRK13947 shikimate kinase; Provisional
Probab=96.84 E-value=0.0015 Score=53.86 Aligned_cols=24 Identities=42% Similarity=0.477 Sum_probs=22.4
Q ss_pred CcEEEeCCCCccHHHHHHHHHHHH
Q 017884 75 PHLLLYGPPGTGKTSTILAVARKL 98 (364)
Q Consensus 75 ~~lll~G~~G~GKt~la~~l~~~l 98 (364)
.++++.|+||+|||++++.+++.+
T Consensus 2 ~~I~l~G~~GsGKst~a~~La~~l 25 (171)
T PRK13947 2 KNIVLIGFMGTGKTTVGKRVATTL 25 (171)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHh
Confidence 368999999999999999999998
No 443
>PRK03839 putative kinase; Provisional
Probab=96.83 E-value=0.0013 Score=54.72 Aligned_cols=22 Identities=41% Similarity=0.665 Sum_probs=21.1
Q ss_pred EEEeCCCCccHHHHHHHHHHHH
Q 017884 77 LLLYGPPGTGKTSTILAVARKL 98 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l 98 (364)
++|.|+||+||||+++.+++.+
T Consensus 3 I~l~G~pGsGKsT~~~~La~~~ 24 (180)
T PRK03839 3 IAITGTPGVGKTTVSKLLAEKL 24 (180)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999999997
No 444
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=96.83 E-value=0.0038 Score=56.62 Aligned_cols=57 Identities=18% Similarity=0.232 Sum_probs=40.0
Q ss_pred CChhhccCC--CCCcchhc----cHHHHHHHHHHHhcCCCCcEEEeCCCCccHHHHHHHHHHHHc
Q 017884 41 SPWVEKYRP--QSLADVAA----HRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLY 99 (364)
Q Consensus 41 ~~~~~~~~p--~~~~~~vg----~~~~~~~l~~~~~~~~~~~lll~G~~G~GKt~la~~l~~~l~ 99 (364)
..-++|+++ .++++++. .+.....|..++..+ .++++.|++|+||||+++++...+.
T Consensus 107 ~~~IRk~~~~~~tl~~lv~~g~~~~~~~~~L~~~v~~~--~nilI~G~tGSGKTTll~aL~~~i~ 169 (323)
T PRK13833 107 AFTIRRRASRLIPLDDYVTSKIMTEAQASVIRSAIDSR--LNIVISGGTGSGKTTLANAVIAEIV 169 (323)
T ss_pred eEEEECcCCCCCCHHHHHHcCCCCHHHHHHHHHHHHcC--CeEEEECCCCCCHHHHHHHHHHHHh
Confidence 334555543 35566654 234455677777755 4699999999999999999999873
No 445
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.81 E-value=0.022 Score=47.74 Aligned_cols=110 Identities=15% Similarity=0.207 Sum_probs=63.3
Q ss_pred EEEeCCCCccHHHHHHHHHHHHcCCCCC--------------------------------CcEEEEeCCC-CCChHHHHH
Q 017884 77 LLLYGPPGTGKTSTILAVARKLYGAQYH--------------------------------NMILELNASD-DRGIDVVRQ 123 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l~~~~~~--------------------------------~~~~~~~~~~-~~~~~~~~~ 123 (364)
+++.|+.|+|||.+.+.++--....+.. ..+++++... ..+...-+.
T Consensus 31 ~lIEGd~~tGKSvLsqr~~YG~L~~g~~v~yvsTe~T~refi~qm~sl~ydv~~~~l~G~l~~~~~~~~~~~~~~~~~~~ 110 (235)
T COG2874 31 ILIEGDNGTGKSVLSQRFAYGFLMNGYRVTYVSTELTVREFIKQMESLSYDVSDFLLSGRLLFFPVNLEPVNWGRRSARK 110 (235)
T ss_pred EEEECCCCccHHHHHHHHHHHHHhCCceEEEEEechhHHHHHHHHHhcCCCchHHHhcceeEEEEecccccccChHHHHH
Confidence 6999999999999999998876544321 1123322211 112222222
Q ss_pred HHHHHHhcCccccCCccceEEEEEeCCCCCCHH----HHHHHHHHHHHhccCccEEEEeeccccCchhhhcc
Q 017884 124 QIQDFASTQSFSFGVKASVKLVLLDEADAMTKD----AQFALRRVIEKYTKNTRFALICNQVNKIIPALQSR 191 (364)
Q Consensus 124 ~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~----~~~~L~~~le~~~~~~~~Il~~~~~~~l~~~l~sr 191 (364)
.+......... .+..|++||-+..+... ....+...+....+..++|++|-+++.+.+....|
T Consensus 111 ~L~~l~~~~k~-----~~~dViIIDSls~~~~~~~~~~vl~fm~~~r~l~d~gKvIilTvhp~~l~e~~~~r 177 (235)
T COG2874 111 LLDLLLEFIKR-----WEKDVIIIDSLSAFATYDSEDAVLNFMTFLRKLSDLGKVIILTVHPSALDEDVLTR 177 (235)
T ss_pred HHHHHHhhHHh-----hcCCEEEEecccHHhhcccHHHHHHHHHHHHHHHhCCCEEEEEeChhhcCHHHHHH
Confidence 33332222111 14679999988766432 33344455556666778888887777777655444
No 446
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=96.81 E-value=0.013 Score=53.24 Aligned_cols=25 Identities=20% Similarity=0.483 Sum_probs=22.4
Q ss_pred CcEEEeCCCCccHHHHHHHHHHHHc
Q 017884 75 PHLLLYGPPGTGKTSTILAVARKLY 99 (364)
Q Consensus 75 ~~lll~G~~G~GKt~la~~l~~~l~ 99 (364)
.++++.||+|+||||+++++...+.
T Consensus 145 ~~ili~G~tGsGKTTll~al~~~~~ 169 (308)
T TIGR02788 145 KNIIISGGTGSGKTTFLKSLVDEIP 169 (308)
T ss_pred CEEEEECCCCCCHHHHHHHHHccCC
Confidence 4699999999999999999998763
No 447
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.81 E-value=0.011 Score=57.32 Aligned_cols=40 Identities=20% Similarity=0.294 Sum_probs=31.0
Q ss_pred HHHHHHHhcCCCCc--EEEeCCCCccHHHHHHHHHHHHcCCC
Q 017884 63 DTIDRLTSENRLPH--LLLYGPPGTGKTSTILAVARKLYGAQ 102 (364)
Q Consensus 63 ~~l~~~~~~~~~~~--lll~G~~G~GKt~la~~l~~~l~~~~ 102 (364)
..|...+..|-.+. +++.||||+|||+++..++......+
T Consensus 250 ~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~g 291 (484)
T TIGR02655 250 VRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENACANK 291 (484)
T ss_pred HhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHHHCC
Confidence 35666677765554 79999999999999999988865443
No 448
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=96.80 E-value=0.014 Score=55.93 Aligned_cols=49 Identities=31% Similarity=0.504 Sum_probs=34.7
Q ss_pred HHHHHHHhcCCCCc--EEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCC
Q 017884 63 DTIDRLTSENRLPH--LLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNAS 113 (364)
Q Consensus 63 ~~l~~~~~~~~~~~--lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~ 113 (364)
..|...+..|-.+. ++++|+||+|||+++..++..+...+ ..+++++..
T Consensus 81 ~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g--~kvlYvs~E 131 (454)
T TIGR00416 81 GELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQ--MKVLYVSGE 131 (454)
T ss_pred HHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcC--CcEEEEECc
Confidence 35666676664444 69999999999999999988775433 245555543
No 449
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.80 E-value=0.02 Score=49.48 Aligned_cols=58 Identities=16% Similarity=0.169 Sum_probs=36.0
Q ss_pred HHHHHhcCCCCc--EEEeCCCCccHHHHHHHHHHHHcCCC----CCCcEEEEeCCCCCChHHHH
Q 017884 65 IDRLTSENRLPH--LLLYGPPGTGKTSTILAVARKLYGAQ----YHNMILELNASDDRGIDVVR 122 (364)
Q Consensus 65 l~~~~~~~~~~~--lll~G~~G~GKt~la~~l~~~l~~~~----~~~~~~~~~~~~~~~~~~~~ 122 (364)
|...+.+|-.+. +.|+||||+|||+++..++......+ ....++.++.........+.
T Consensus 8 lD~~l~GG~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl~ 71 (226)
T cd01393 8 LDELLGGGIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLV 71 (226)
T ss_pred HHHHhCCCCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHHH
Confidence 444454443333 69999999999999999987754322 12455666665433333333
No 450
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.80 E-value=0.0071 Score=50.19 Aligned_cols=42 Identities=17% Similarity=0.349 Sum_probs=30.6
Q ss_pred ceEEEEEeCC-CCCCHHHHHHHHHHHHHhccC--ccEEEEeeccc
Q 017884 141 SVKLVLLDEA-DAMTKDAQFALRRVIEKYTKN--TRFALICNQVN 182 (364)
Q Consensus 141 ~~~viiiDe~-~~l~~~~~~~L~~~le~~~~~--~~~Il~~~~~~ 182 (364)
+++++++||. ..+....+..+.+++.+.... ..+|++++...
T Consensus 118 ~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~ 162 (178)
T cd03229 118 DPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLD 162 (178)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 5789999995 556677788888888876543 55777776544
No 451
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.79 E-value=0.013 Score=50.95 Aligned_cols=59 Identities=15% Similarity=0.130 Sum_probs=36.0
Q ss_pred HHHHHhcCCCCc--EEEeCCCCccHHHHHHHHHHHHcCCC----CCCcEEEEeCCCCCChHHHHH
Q 017884 65 IDRLTSENRLPH--LLLYGPPGTGKTSTILAVARKLYGAQ----YHNMILELNASDDRGIDVVRQ 123 (364)
Q Consensus 65 l~~~~~~~~~~~--lll~G~~G~GKt~la~~l~~~l~~~~----~~~~~~~~~~~~~~~~~~~~~ 123 (364)
|...+.+|-.+. +.|+||||+|||+++..++....... ....++.++.........+.+
T Consensus 8 lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~ 72 (235)
T cd01123 8 LDELLGGGIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQ 72 (235)
T ss_pred hHhhccCCCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHH
Confidence 334444443333 69999999999999999986643221 134566776655333333333
No 452
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=96.79 E-value=0.016 Score=47.03 Aligned_cols=22 Identities=18% Similarity=0.297 Sum_probs=19.2
Q ss_pred EEEeCCCCccHHHHHHHHHHHH
Q 017884 77 LLLYGPPGTGKTSTILAVARKL 98 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l 98 (364)
+++.|++|+|||+++..+...-
T Consensus 3 i~vvG~~~vGKTsli~~~~~~~ 24 (161)
T cd04124 3 IILLGDSAVGKSKLVERFLMDG 24 (161)
T ss_pred EEEECCCCCCHHHHHHHHHhCC
Confidence 7899999999999999887653
No 453
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=96.79 E-value=0.022 Score=48.83 Aligned_cols=99 Identities=16% Similarity=0.287 Sum_probs=56.4
Q ss_pred EEEeCCCCccHHHHHHHHHHHHcCCCCCCcE---------------EEEeCCCCCChHHHHHHHHHHHhcCccccCCccc
Q 017884 77 LLLYGPPGTGKTSTILAVARKLYGAQYHNMI---------------LELNASDDRGIDVVRQQIQDFASTQSFSFGVKAS 141 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l~~~~~~~~~---------------~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 141 (364)
++++|++|+|||+++.++.+..........+ +.+...+..+...++........ +. .
T Consensus 8 ivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~------~~--~ 79 (219)
T COG1100 8 IVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYR------GA--N 79 (219)
T ss_pred EEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhc------CC--C
Confidence 7999999999999999999887654332221 11222233344444443333221 11 3
Q ss_pred eEEEEEeCCC-CCCHHHHHHHHHHHHHhc-cCccEEEEeecccc
Q 017884 142 VKLVLLDEAD-AMTKDAQFALRRVIEKYT-KNTRFALICNQVNK 183 (364)
Q Consensus 142 ~~viiiDe~~-~l~~~~~~~L~~~le~~~-~~~~~Il~~~~~~~ 183 (364)
.-+++.|... .-..+........+.... ....+|++.|..+.
T Consensus 80 ~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl 123 (219)
T COG1100 80 GILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDL 123 (219)
T ss_pred EEEEEEecccchhhhHHHHHHHHHHHHhCCCCceEEEEeccccc
Confidence 5566666654 333444445554455444 35778888876654
No 454
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=96.77 E-value=0.0023 Score=58.02 Aligned_cols=49 Identities=22% Similarity=0.300 Sum_probs=39.1
Q ss_pred CCc-chhccHHHHHHHHHHHhcC----C--CCcEEEeCCCCccHHHHHHHHHHHHc
Q 017884 51 SLA-DVAAHRDIVDTIDRLTSEN----R--LPHLLLYGPPGTGKTSTILAVARKLY 99 (364)
Q Consensus 51 ~~~-~~vg~~~~~~~l~~~~~~~----~--~~~lll~G~~G~GKt~la~~l~~~l~ 99 (364)
.|+ ++.|.++.+.+|.+.++.. . ..-++|.||+|+|||++++.+.+.+.
T Consensus 58 ~f~~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~le 113 (358)
T PF08298_consen 58 FFEDEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGLE 113 (358)
T ss_pred CccccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHhh
Confidence 354 8999999999888777632 1 12279999999999999999999884
No 455
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=96.77 E-value=0.0028 Score=50.96 Aligned_cols=33 Identities=30% Similarity=0.537 Sum_probs=27.5
Q ss_pred EEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEE
Q 017884 77 LLLYGPPGTGKTSTILAVARKLYGAQYHNMILE 109 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~ 109 (364)
++|+|.+|+||||+|+++.+.|...+....++.
T Consensus 5 IwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LD 37 (156)
T PF01583_consen 5 IWLTGLSGSGKTTLARALERRLFARGIKVYLLD 37 (156)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCcEEEec
Confidence 799999999999999999999987766555544
No 456
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=96.77 E-value=0.013 Score=49.52 Aligned_cols=23 Identities=17% Similarity=0.384 Sum_probs=20.4
Q ss_pred cEEEeCCCCccHHHHHHHHHHHH
Q 017884 76 HLLLYGPPGTGKTSTILAVARKL 98 (364)
Q Consensus 76 ~lll~G~~G~GKt~la~~l~~~l 98 (364)
.++|.||.|+||||+.+.++..+
T Consensus 27 ~~~ltGpNg~GKSTllr~i~~~~ 49 (199)
T cd03283 27 GILITGSNMSGKSTFLRTIGVNV 49 (199)
T ss_pred EEEEECCCCCChHHHHHHHHHHH
Confidence 47999999999999999998654
No 457
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=96.76 E-value=0.0028 Score=56.16 Aligned_cols=50 Identities=22% Similarity=0.415 Sum_probs=38.7
Q ss_pred CCCcchhccHHHHHHHHHHHhcCCCCcEEEeCCCCccHHHHHHHHHHHHcC
Q 017884 50 QSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYG 100 (364)
Q Consensus 50 ~~~~~~vg~~~~~~~l~~~~~~~~~~~lll~G~~G~GKt~la~~l~~~l~~ 100 (364)
.+++++...+.....|..++.... ..++|.||+|+||||+++++...+..
T Consensus 57 ~~l~~lg~~~~~~~~l~~~~~~~~-GlilisG~tGSGKTT~l~all~~i~~ 106 (264)
T cd01129 57 LDLEKLGLKPENLEIFRKLLEKPH-GIILVTGPTGSGKTTTLYSALSELNT 106 (264)
T ss_pred CCHHHcCCCHHHHHHHHHHHhcCC-CEEEEECCCCCcHHHHHHHHHhhhCC
Confidence 356666667777778877776442 34899999999999999999888753
No 458
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=96.76 E-value=0.048 Score=44.03 Aligned_cols=21 Identities=24% Similarity=0.419 Sum_probs=19.2
Q ss_pred EEEeCCCCccHHHHHHHHHHH
Q 017884 77 LLLYGPPGTGKTSTILAVARK 97 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~ 97 (364)
+++.|++|+|||+++..+...
T Consensus 3 v~~vG~~~~GKTsl~~~~~~~ 23 (162)
T cd04106 3 VIVVGNGNVGKSSMIQRFVKG 23 (162)
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 789999999999999999864
No 459
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=96.76 E-value=0.006 Score=55.23 Aligned_cols=22 Identities=36% Similarity=0.505 Sum_probs=20.7
Q ss_pred EEEeCCCCccHHHHHHHHHHHH
Q 017884 77 LLLYGPPGTGKTSTILAVARKL 98 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l 98 (364)
+++.|+||+||||+++.+++.+
T Consensus 5 iil~G~pGSGKSTla~~L~~~~ 26 (300)
T PHA02530 5 ILTVGVPGSGKSTWAREFAAKN 26 (300)
T ss_pred EEEEcCCCCCHHHHHHHHHHHC
Confidence 6899999999999999999986
No 460
>PRK13808 adenylate kinase; Provisional
Probab=96.75 E-value=0.022 Score=51.79 Aligned_cols=23 Identities=35% Similarity=0.761 Sum_probs=21.3
Q ss_pred cEEEeCCCCccHHHHHHHHHHHH
Q 017884 76 HLLLYGPPGTGKTSTILAVARKL 98 (364)
Q Consensus 76 ~lll~G~~G~GKt~la~~l~~~l 98 (364)
.++|+||||+|||++++.|++.+
T Consensus 2 rIiv~GpPGSGK~T~a~~LA~~y 24 (333)
T PRK13808 2 RLILLGPPGAGKGTQAQRLVQQY 24 (333)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999999986
No 461
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=96.74 E-value=0.0098 Score=59.28 Aligned_cols=41 Identities=17% Similarity=0.353 Sum_probs=29.9
Q ss_pred ceEEEEEeCCCC-CCHHHHHHHHHHHHHhccCccEEEEeecc
Q 017884 141 SVKLVLLDEADA-MTKDAQFALRRVIEKYTKNTRFALICNQV 181 (364)
Q Consensus 141 ~~~viiiDe~~~-l~~~~~~~L~~~le~~~~~~~~Il~~~~~ 181 (364)
++.++++||+-. +..+....+.+.+.+...+..+|++|+..
T Consensus 503 ~~~IliLDE~TSaLD~~te~~i~~~l~~~~~~~TvIiItHrl 544 (588)
T PRK11174 503 PCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQL 544 (588)
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEecCh
Confidence 578999999754 45666777777787765555677777765
No 462
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=96.74 E-value=0.012 Score=58.59 Aligned_cols=41 Identities=22% Similarity=0.447 Sum_probs=30.7
Q ss_pred ceEEEEEeCCC-CCCHHHHHHHHHHHHHhccCccEEEEeecc
Q 017884 141 SVKLVLLDEAD-AMTKDAQFALRRVIEKYTKNTRFALICNQV 181 (364)
Q Consensus 141 ~~~viiiDe~~-~l~~~~~~~L~~~le~~~~~~~~Il~~~~~ 181 (364)
++.++++||.. .+.++....+.+.+.+...+..+|++|+.+
T Consensus 498 ~~~ililDEptsaLD~~t~~~i~~~l~~~~~~~tvI~VtHr~ 539 (582)
T PRK11176 498 DSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRL 539 (582)
T ss_pred CCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecch
Confidence 57799999974 455666777888887766667788888765
No 463
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=96.73 E-value=0.017 Score=51.52 Aligned_cols=23 Identities=30% Similarity=0.680 Sum_probs=21.1
Q ss_pred EEEeCCCCccHHHHHHHHHHHHc
Q 017884 77 LLLYGPPGTGKTSTILAVARKLY 99 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l~ 99 (364)
+++.||+|+|||+++..+++.+.
T Consensus 2 i~i~G~t~~GKs~la~~l~~~~~ 24 (287)
T TIGR00174 2 IFIMGPTAVGKSQLAIQLAKKLN 24 (287)
T ss_pred EEEECCCCCCHHHHHHHHHHhCC
Confidence 68999999999999999999863
No 464
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=96.72 E-value=0.0087 Score=51.70 Aligned_cols=36 Identities=22% Similarity=0.247 Sum_probs=26.0
Q ss_pred HHHHHhcCCCCc--EEEeCCCCccHHHHHHHHHHHHcC
Q 017884 65 IDRLTSENRLPH--LLLYGPPGTGKTSTILAVARKLYG 100 (364)
Q Consensus 65 l~~~~~~~~~~~--lll~G~~G~GKt~la~~l~~~l~~ 100 (364)
|...+.+|-++. +++.|+||+|||+++..++.....
T Consensus 5 LD~~l~gGi~~g~~~li~G~~G~GKt~~~~~~~~~~~~ 42 (224)
T TIGR03880 5 LDEMLGGGFPEGHVIVVIGEYGTGKTTFSLQFLYQGLK 42 (224)
T ss_pred hHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 444455553333 799999999999999988876543
No 465
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=96.72 E-value=0.025 Score=49.32 Aligned_cols=50 Identities=24% Similarity=0.339 Sum_probs=32.5
Q ss_pred EEEeCCCCccHHHHHHHHHHHHcCC----------CCCCcEEEEeCCCCCChHHHHHHHHHH
Q 017884 77 LLLYGPPGTGKTSTILAVARKLYGA----------QYHNMILELNASDDRGIDVVRQQIQDF 128 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l~~~----------~~~~~~~~~~~~~~~~~~~~~~~i~~~ 128 (364)
-+|+||+|+|||+++..++..+... .....++.++..+ ..+.+...+...
T Consensus 4 ~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~Ed--~~~~i~~Rl~~i 63 (239)
T cd01125 4 SALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAED--PREEIHRRLEAI 63 (239)
T ss_pred eEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEECCC--CHHHHHHHHHHH
Confidence 4899999999999999999876421 1234566666554 233444444443
No 466
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.72 E-value=0.014 Score=49.71 Aligned_cols=56 Identities=13% Similarity=0.129 Sum_probs=37.1
Q ss_pred ceEEEEEeCC-CCCCHHHHHHHHHHHHHhc-cCccEEEEeeccccCchhhhccceEEEecCCC
Q 017884 141 SVKLVLLDEA-DAMTKDAQFALRRVIEKYT-KNTRFALICNQVNKIIPALQSRCTRFRFAPLE 201 (364)
Q Consensus 141 ~~~viiiDe~-~~l~~~~~~~L~~~le~~~-~~~~~Il~~~~~~~l~~~l~sr~~~i~~~~~~ 201 (364)
+++++++||. ..+.......+.+++.+.. ....+|++++....+.. ..++.+.++.
T Consensus 145 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~-----~~~~~~~~~~ 202 (207)
T PRK13539 145 NRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG-----ARELDLGPFA 202 (207)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc-----CcEEeecCcc
Confidence 5789999995 4666777888888887653 34557777776655443 3345555543
No 467
>PRK07667 uridine kinase; Provisional
Probab=96.71 E-value=0.0039 Score=52.51 Aligned_cols=34 Identities=18% Similarity=0.220 Sum_probs=27.0
Q ss_pred EEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEE
Q 017884 77 LLLYGPPGTGKTSTILAVARKLYGAQYHNMILEL 110 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~ 110 (364)
+.|.|++|+||||+++.++..+...+.+..++..
T Consensus 20 IgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~ 53 (193)
T PRK07667 20 LGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHI 53 (193)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEc
Confidence 6999999999999999999998655544444443
No 468
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=96.70 E-value=0.015 Score=46.81 Aligned_cols=20 Identities=35% Similarity=0.816 Sum_probs=18.8
Q ss_pred EeCCCCccHHHHHHHHHHHH
Q 017884 79 LYGPPGTGKTSTILAVARKL 98 (364)
Q Consensus 79 l~G~~G~GKt~la~~l~~~l 98 (364)
|.||||+|||++++.+++..
T Consensus 1 i~G~PgsGK~t~~~~la~~~ 20 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRY 20 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhc
Confidence 57999999999999999986
No 469
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.69 E-value=0.0083 Score=55.25 Aligned_cols=27 Identities=30% Similarity=0.512 Sum_probs=23.0
Q ss_pred EEEeCCCCccHHHHHHHHHHHHcCCCC
Q 017884 77 LLLYGPPGTGKTSTILAVARKLYGAQY 103 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l~~~~~ 103 (364)
++|.||+|+||||++..++..+...+.
T Consensus 209 i~lvGptGvGKTTt~akLA~~l~~~g~ 235 (407)
T PRK12726 209 ISLIGQTGVGKTTTLVKLGWQLLKQNR 235 (407)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCC
Confidence 799999999999999999987754443
No 470
>PRK00625 shikimate kinase; Provisional
Probab=96.68 E-value=0.0021 Score=53.01 Aligned_cols=23 Identities=43% Similarity=0.522 Sum_probs=21.6
Q ss_pred cEEEeCCCCccHHHHHHHHHHHH
Q 017884 76 HLLLYGPPGTGKTSTILAVARKL 98 (364)
Q Consensus 76 ~lll~G~~G~GKt~la~~l~~~l 98 (364)
+++|.|.||+|||++++.+++.+
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l 24 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFL 24 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47999999999999999999997
No 471
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=96.67 E-value=0.02 Score=62.77 Aligned_cols=117 Identities=17% Similarity=0.175 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHhcCCCCcEEEeCCCCccHHHHHHHHHHHHcC--CCCCCcEEEEeCCC-------CCChHHHHHHHHHHH
Q 017884 59 RDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYG--AQYHNMILELNASD-------DRGIDVVRQQIQDFA 129 (364)
Q Consensus 59 ~~~~~~l~~~~~~~~~~~lll~G~~G~GKt~la~~l~~~l~~--~~~~~~~~~~~~~~-------~~~~~~~~~~i~~~~ 129 (364)
+.....+..++.... ..++|.|.+|+|||++++.+...+.. ......++-+..+. ..+.. -.-|..+.
T Consensus 970 ~~Q~~Av~~il~s~d-r~~~I~G~AGTGKTT~l~~v~~~~~~l~~~~~~~V~glAPTgrAAk~L~e~Gi~--A~TI~s~L 1046 (1747)
T PRK13709 970 SGQRAATRMILESTD-RFTVVQGYAGVGKTTQFRAVMSAVNTLPESERPRVVGLGPTHRAVGEMRSAGVD--AQTLASFL 1046 (1747)
T ss_pred HHHHHHHHHHHhCCC-cEEEEEeCCCCCHHHHHHHHHHHHHHhhcccCceEEEECCcHHHHHHHHhcCcc--hhhHHHHh
Confidence 444555555565432 34799999999999999999877531 11122233332211 01111 01122222
Q ss_pred hcCc-ccc---CCccceEEEEEeCCCCCCHHHHHHHHHHHHHhccCccEEEEeec
Q 017884 130 STQS-FSF---GVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQ 180 (364)
Q Consensus 130 ~~~~-~~~---~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~ 180 (364)
.... +.. .......|+||||+-.+.......|++.++. .++++||+++.
T Consensus 1047 ~~~~~~~~~~~~~~~~~~llIVDEaSMv~~~~m~~Ll~~~~~--~garvVLVGD~ 1099 (1747)
T PRK13709 1047 HDTQLQQRSGETPDFSNTLFLLDESSMVGNTDMARAYALIAA--GGGRAVSSGDT 1099 (1747)
T ss_pred cccccccccccCCCCCCcEEEEEccccccHHHHHHHHHhhhc--CCCEEEEecch
Confidence 2110 000 0011467999999999998888888887763 36889999853
No 472
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=96.67 E-value=0.024 Score=46.26 Aligned_cols=102 Identities=21% Similarity=0.198 Sum_probs=53.2
Q ss_pred cEEEeCCCCccHHHHHHHHHHHHcCCC----------CC--CcEEE----EeCCCCCChHHHHHHHHHHHhcCccccCCc
Q 017884 76 HLLLYGPPGTGKTSTILAVARKLYGAQ----------YH--NMILE----LNASDDRGIDVVRQQIQDFASTQSFSFGVK 139 (364)
Q Consensus 76 ~lll~G~~G~GKt~la~~l~~~l~~~~----------~~--~~~~~----~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 139 (364)
..++.||.|+|||+++++++-.+.... .. ..... +......+....+-.+.......+ .
T Consensus 23 ~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~lS~G~~~~~~la~~L~~~~--~--- 97 (162)
T cd03227 23 LTIITGPNGSGKSTILDAIGLALGGAQSATRRRSGVKAGCIVAAVSAELIFTRLQLSGGEKELSALALILALAS--L--- 97 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcchhhhccCcccCCCcceeeEEEEehheeeccccHHHHHHHHHHHHhcC--C---
Confidence 479999999999999999865543221 11 11111 000111111222222222222111 0
Q ss_pred cceEEEEEeCCCCC-CHHHHHHHHHHHHHhcc-CccEEEEeeccc
Q 017884 140 ASVKLVLLDEADAM-TKDAQFALRRVIEKYTK-NTRFALICNQVN 182 (364)
Q Consensus 140 ~~~~viiiDe~~~l-~~~~~~~L~~~le~~~~-~~~~Il~~~~~~ 182 (364)
.++.++++||...- .......+...+.+... .+.+|++|....
T Consensus 98 ~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~~~~vii~TH~~~ 142 (162)
T cd03227 98 KPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITHLPE 142 (162)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHH
Confidence 13689999997555 44555566666555432 356677775543
No 473
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=96.67 E-value=0.0029 Score=54.73 Aligned_cols=34 Identities=32% Similarity=0.486 Sum_probs=24.1
Q ss_pred HHHHHhcCCCCc--EEEeCCCCccHHHHHHHHHHHH
Q 017884 65 IDRLTSENRLPH--LLLYGPPGTGKTSTILAVARKL 98 (364)
Q Consensus 65 l~~~~~~~~~~~--lll~G~~G~GKt~la~~l~~~l 98 (364)
|...+.+|-++. +++.||||+|||+++..++..-
T Consensus 8 LD~~l~GGip~gs~~li~G~~GsGKT~l~~q~l~~~ 43 (226)
T PF06745_consen 8 LDELLGGGIPKGSVVLISGPPGSGKTTLALQFLYNG 43 (226)
T ss_dssp HHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCCcHHHHHHHHHHh
Confidence 334454443333 7999999999999998877543
No 474
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.66 E-value=0.0043 Score=55.58 Aligned_cols=24 Identities=38% Similarity=0.635 Sum_probs=21.6
Q ss_pred EEEeCCCCccHHHHHHHHHHHHcC
Q 017884 77 LLLYGPPGTGKTSTILAVARKLYG 100 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l~~ 100 (364)
++|.||+|+||||++..++..+..
T Consensus 197 i~~vGptGvGKTTt~~kLa~~~~~ 220 (282)
T TIGR03499 197 IALVGPTGVGKTTTLAKLAARFVL 220 (282)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
Confidence 789999999999999999988743
No 475
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=96.64 E-value=0.0041 Score=48.62 Aligned_cols=23 Identities=35% Similarity=0.494 Sum_probs=21.8
Q ss_pred EEEeCCCCccHHHHHHHHHHHHc
Q 017884 77 LLLYGPPGTGKTSTILAVARKLY 99 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l~ 99 (364)
++|.|+.|+|||++++.+++.+.
T Consensus 25 i~l~G~lGaGKTtl~~~l~~~lg 47 (133)
T TIGR00150 25 VLLKGDLGAGKTTLVQGLLQGLG 47 (133)
T ss_pred EEEEcCCCCCHHHHHHHHHHHcC
Confidence 79999999999999999999974
No 476
>PLN02674 adenylate kinase
Probab=96.64 E-value=0.046 Score=47.57 Aligned_cols=24 Identities=33% Similarity=0.679 Sum_probs=22.1
Q ss_pred CcEEEeCCCCccHHHHHHHHHHHH
Q 017884 75 PHLLLYGPPGTGKTSTILAVARKL 98 (364)
Q Consensus 75 ~~lll~G~~G~GKt~la~~l~~~l 98 (364)
+.++|.||||+||+|.++.+++.+
T Consensus 32 ~~i~l~G~PGsGKgT~a~~La~~~ 55 (244)
T PLN02674 32 KRLILIGPPGSGKGTQSPIIKDEY 55 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHc
Confidence 458999999999999999999986
No 477
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.63 E-value=0.01 Score=49.94 Aligned_cols=42 Identities=17% Similarity=0.340 Sum_probs=30.3
Q ss_pred ceEEEEEeCC-CCCCHHHHHHHHHHHHHhcc-CccEEEEeeccc
Q 017884 141 SVKLVLLDEA-DAMTKDAQFALRRVIEKYTK-NTRFALICNQVN 182 (364)
Q Consensus 141 ~~~viiiDe~-~~l~~~~~~~L~~~le~~~~-~~~~Il~~~~~~ 182 (364)
+++++++||. ..+.......+.+.+.+... ...+|++++...
T Consensus 126 ~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~ 169 (192)
T cd03232 126 KPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPS 169 (192)
T ss_pred CCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCCh
Confidence 5789999995 45567778888888887643 455777776644
No 478
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=96.63 E-value=0.0059 Score=52.95 Aligned_cols=44 Identities=20% Similarity=0.306 Sum_probs=32.0
Q ss_pred HHHHHHHHHHhcCCCCc-EEEeCCCCccHHHHHHHHHHHHcCCCC
Q 017884 60 DIVDTIDRLTSENRLPH-LLLYGPPGTGKTSTILAVARKLYGAQY 103 (364)
Q Consensus 60 ~~~~~l~~~~~~~~~~~-lll~G~~G~GKt~la~~l~~~l~~~~~ 103 (364)
.+++.+..+......+. +.|.||+|+||||+++.++..+...+.
T Consensus 18 ~l~~~~~~~~~~~~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g 62 (229)
T PRK09270 18 PLLRRLAALQAEPQRRTIVGIAGPPGAGKSTLAEFLEALLQQDGE 62 (229)
T ss_pred HHHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHhhhccC
Confidence 44455666665534344 699999999999999999998865443
No 479
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.62 E-value=0.018 Score=47.46 Aligned_cols=42 Identities=14% Similarity=0.332 Sum_probs=30.2
Q ss_pred ceEEEEEeCC-CCCCHHHHHHHHHHHHHhccC-ccEEEEeeccc
Q 017884 141 SVKLVLLDEA-DAMTKDAQFALRRVIEKYTKN-TRFALICNQVN 182 (364)
Q Consensus 141 ~~~viiiDe~-~~l~~~~~~~L~~~le~~~~~-~~~Il~~~~~~ 182 (364)
+++++++||. ..+.......+.+++...... ..+|++++...
T Consensus 113 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~ 156 (173)
T cd03230 113 DPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILE 156 (173)
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHH
Confidence 5789999996 455667788888888876543 45677776543
No 480
>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []. Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation
Probab=96.60 E-value=0.049 Score=43.83 Aligned_cols=77 Identities=14% Similarity=0.168 Sum_probs=42.6
Q ss_pred eCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeC-CCCCChHHHHHHHHHHHhcCccccCCccceEEEEEeCCCCCCHHHH
Q 017884 80 YGPPGTGKTSTILAVARKLYGAQYHNMILELNA-SDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQ 158 (364)
Q Consensus 80 ~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~ 158 (364)
.+..||||||++.+|.+.+.. +..+.-+- ........+...+..+... ...+|+.|--..+. ...
T Consensus 5 IAtiGCGKTTva~aL~~LFg~----wgHvQnDnI~~k~~~~f~~~~l~~L~~~---------~~~vViaDRNNh~~-reR 70 (168)
T PF08303_consen 5 IATIGCGKTTVALALSNLFGE----WGHVQNDNITGKRKPKFIKAVLELLAKD---------THPVVIADRNNHQK-RER 70 (168)
T ss_pred ecCCCcCHHHHHHHHHHHcCC----CCccccCCCCCCCHHHHHHHHHHHHhhC---------CCCEEEEeCCCchH-HHH
Confidence 578999999999999988632 22222111 1111222222333333111 46799998655553 445
Q ss_pred HHHHHHHHHhcc
Q 017884 159 FALRRVIEKYTK 170 (364)
Q Consensus 159 ~~L~~~le~~~~ 170 (364)
..|+..++....
T Consensus 71 ~ql~~~~~~~~~ 82 (168)
T PF08303_consen 71 KQLFEDVSQLKP 82 (168)
T ss_pred HHHHHHHHHhcc
Confidence 667767666443
No 481
>PRK10867 signal recognition particle protein; Provisional
Probab=96.60 E-value=0.05 Score=51.55 Aligned_cols=25 Identities=32% Similarity=0.461 Sum_probs=22.1
Q ss_pred EEEeCCCCccHHHHHHHHHHHHcCC
Q 017884 77 LLLYGPPGTGKTSTILAVARKLYGA 101 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l~~~ 101 (364)
++++|++|+||||++..+|..+...
T Consensus 103 I~~vG~~GsGKTTtaakLA~~l~~~ 127 (433)
T PRK10867 103 IMMVGLQGAGKTTTAGKLAKYLKKK 127 (433)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHh
Confidence 6999999999999999999887554
No 482
>PRK14530 adenylate kinase; Provisional
Probab=96.60 E-value=0.0026 Score=54.60 Aligned_cols=24 Identities=38% Similarity=0.757 Sum_probs=22.3
Q ss_pred CcEEEeCCCCccHHHHHHHHHHHH
Q 017884 75 PHLLLYGPPGTGKTSTILAVARKL 98 (364)
Q Consensus 75 ~~lll~G~~G~GKt~la~~l~~~l 98 (364)
+.++|.|+||+||||+++.+++.+
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~ 27 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEF 27 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 458999999999999999999987
No 483
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=96.60 E-value=0.011 Score=66.16 Aligned_cols=118 Identities=16% Similarity=0.260 Sum_probs=68.4
Q ss_pred hccHHHHHHHHHHHhcCCCCcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCCCChHHHH-----------HH
Q 017884 56 AAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVR-----------QQ 124 (364)
Q Consensus 56 vg~~~~~~~l~~~~~~~~~~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~-----------~~ 124 (364)
.-.+.....+..++.... ...++.|++|+|||++++.+...+...+.. +.-+..+. .....+. ..
T Consensus 429 ~Ls~~Q~~Av~~il~s~~-~v~ii~G~aGTGKTt~l~~l~~~~~~~G~~--V~~lAPTg-rAA~~L~e~~g~~A~Ti~~~ 504 (1960)
T TIGR02760 429 ALSPSNKDAVSTLFTSTK-RFIIINGFGGTGSTEIAQLLLHLASEQGYE--IQIITAGS-LSAQELRQKIPRLASTFITW 504 (1960)
T ss_pred CCCHHHHHHHHHHHhCCC-CeEEEEECCCCCHHHHHHHHHHHHHhcCCe--EEEEeCCH-HHHHHHHHHhcchhhhHHHH
Confidence 334556666666666542 336999999999999999999887655433 22222211 1111111 11
Q ss_pred HHHHHhcCcc----cc----CCccceEEEEEeCCCCCCHHHHHHHHHHHHHhccCccEEEEee
Q 017884 125 IQDFASTQSF----SF----GVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICN 179 (364)
Q Consensus 125 i~~~~~~~~~----~~----~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~ 179 (364)
+......... .| .+.....++||||+..+.......|++.... .++++||+.+
T Consensus 505 l~~l~~~~~~~tv~~fl~~~~~l~~~~vlIVDEAsMl~~~~~~~Ll~~a~~--~garvVlvGD 565 (1960)
T TIGR02760 505 VKNLFNDDQDHTVQGLLDKSSPFSNKDIFVVDEANKLSNNELLKLIDKAEQ--HNSKLILLND 565 (1960)
T ss_pred HHhhcccccchhHHHhhcccCCCCCCCEEEEECCCCCCHHHHHHHHHHHhh--cCCEEEEEcC
Confidence 1110000000 00 0001467999999999998877777776553 4688888875
No 484
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=96.59 E-value=0.0066 Score=58.74 Aligned_cols=83 Identities=13% Similarity=0.071 Sum_probs=46.0
Q ss_pred EEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCCCChHHHHHHHHHHHhcCccccCCccceEEEEEeCCCCCCHH
Q 017884 77 LLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKD 156 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~ 156 (364)
++++|+||+||||+++.++... .. ..++.........+........ . .++-+|||.. .+...
T Consensus 372 Vil~G~pGSGKST~A~~l~~~~-----g~--~~vn~D~lg~~~~~~~~a~~~L-------~---~G~sVVIDaT-n~~~~ 433 (526)
T TIGR01663 372 VIAVGFPGAGKSHFCKKFFQPA-----GY--KHVNADTLGSTQNCLTACERAL-------D---QGKRCAIDNT-NPDAA 433 (526)
T ss_pred EEEECCCCCCHHHHHHHHHHHc-----CC--eEECcHHHHHHHHHHHHHHHHH-------h---CCCcEEEECC-CCCHH
Confidence 7999999999999999998874 12 2333322111111111111211 1 2344666655 45666
Q ss_pred HHHHHHHHHHHhccCccEEEE
Q 017884 157 AQFALRRVIEKYTKNTRFALI 177 (364)
Q Consensus 157 ~~~~L~~~le~~~~~~~~Il~ 177 (364)
....+..+-.+..-.++++..
T Consensus 434 ~R~~~i~lAk~~gv~v~~i~~ 454 (526)
T TIGR01663 434 SRAKFLQCARAAGIPCRCFLF 454 (526)
T ss_pred HHHHHHHHHHHcCCeEEEEEe
Confidence 677777776665434444333
No 485
>PF13337 Lon_2: Putative ATP-dependent Lon protease
Probab=96.59 E-value=0.07 Score=50.14 Aligned_cols=92 Identities=17% Similarity=0.294 Sum_probs=53.2
Q ss_pred cEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCCCChHHHHHHHHHHHhcCccccCCccceEEEEEeCCCCCC-
Q 017884 76 HLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMT- 154 (364)
Q Consensus 76 ~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~- 154 (364)
|++=.||.|||||++-+.+... ..-+++.... .-..+-+.... . .+-.+...+|++||+..+.
T Consensus 210 NliELgPrGTGKS~vy~eiSp~---------~~liSGG~~T----~A~LFyn~~~~-~--~GlV~~~D~VafDEv~~i~f 273 (457)
T PF13337_consen 210 NLIELGPRGTGKSYVYKEISPY---------GILISGGQVT----VAKLFYNMSTG-Q--IGLVGRWDVVAFDEVAGIKF 273 (457)
T ss_pred ceEEEcCCCCCceeehhhcCcc---------cEEEECCCcc----hHHheeeccCC-c--ceeeeeccEEEEEeccCccc
Confidence 5788899999999986554322 2233332211 11111111111 1 1222247799999999886
Q ss_pred --HHHHHHHHHHHHHh---------ccCccEEEEeecccc
Q 017884 155 --KDAQFALRRVIEKY---------TKNTRFALICNQVNK 183 (364)
Q Consensus 155 --~~~~~~L~~~le~~---------~~~~~~Il~~~~~~~ 183 (364)
++....|..+|+.. ..++.+||++|-...
T Consensus 274 ~d~d~i~imK~YMesG~fsRG~~~i~a~as~vf~GNi~~~ 313 (457)
T PF13337_consen 274 KDKDEIQIMKDYMESGSFSRGKEEINADASMVFVGNINQS 313 (457)
T ss_pred CChHHHHHHHHHHhccceeecccccccceeEEEEcCcCCc
Confidence 55567777788753 345678888875533
No 486
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.59 E-value=0.013 Score=55.13 Aligned_cols=27 Identities=26% Similarity=0.415 Sum_probs=23.4
Q ss_pred EEEeCCCCccHHHHHHHHHHHHcCCCC
Q 017884 77 LLLYGPPGTGKTSTILAVARKLYGAQY 103 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l~~~~~ 103 (364)
++|+|++|+||||++..+|..+...+.
T Consensus 103 i~lvG~~GvGKTTtaaKLA~~l~~~G~ 129 (429)
T TIGR01425 103 IMFVGLQGSGKTTTCTKLAYYYQRKGF 129 (429)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCC
Confidence 799999999999999999988765544
No 487
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=96.57 E-value=0.018 Score=48.05 Aligned_cols=20 Identities=25% Similarity=0.454 Sum_probs=18.3
Q ss_pred EEEeCCCCccHHHHHHHHHH
Q 017884 77 LLLYGPPGTGKTSTILAVAR 96 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~ 96 (364)
++|+||.|+|||++.+.++-
T Consensus 2 ~~ltG~N~~GKst~l~~i~~ 21 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVGL 21 (185)
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 58999999999999999984
No 488
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.57 E-value=0.0052 Score=52.55 Aligned_cols=42 Identities=12% Similarity=0.326 Sum_probs=31.7
Q ss_pred ceEEEEEeCC-CCCCHHHHHHHHHHHHHhccCccEEEEeeccc
Q 017884 141 SVKLVLLDEA-DAMTKDAQFALRRVIEKYTKNTRFALICNQVN 182 (364)
Q Consensus 141 ~~~viiiDe~-~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~ 182 (364)
++.++++||. ..+.......+.+++.+......+|++++...
T Consensus 148 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~ 190 (211)
T cd03264 148 DPSILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVE 190 (211)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHH
Confidence 6789999995 55667788888899888765555777776544
No 489
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.57 E-value=0.013 Score=48.71 Aligned_cols=41 Identities=20% Similarity=0.389 Sum_probs=29.4
Q ss_pred ceEEEEEeCC-CCCCHHHHHHHHHHHHHhcc-CccEEEEeecc
Q 017884 141 SVKLVLLDEA-DAMTKDAQFALRRVIEKYTK-NTRFALICNQV 181 (364)
Q Consensus 141 ~~~viiiDe~-~~l~~~~~~~L~~~le~~~~-~~~~Il~~~~~ 181 (364)
++.++++||. ..+.......+.+++.+... ...+|++++..
T Consensus 122 ~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~ 164 (182)
T cd03215 122 DPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSEL 164 (182)
T ss_pred CCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 5789999995 55667778888888877643 45567777654
No 490
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.56 E-value=0.02 Score=50.92 Aligned_cols=33 Identities=33% Similarity=0.446 Sum_probs=25.3
Q ss_pred EEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEE
Q 017884 77 LLLYGPPGTGKTSTILAVARKLYGAQYHNMILE 109 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~ 109 (364)
+.|.||+|+||||++..++..+...+....++.
T Consensus 75 i~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~ 107 (272)
T TIGR00064 75 ILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAA 107 (272)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEe
Confidence 688899999999999999988765544333333
No 491
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=96.55 E-value=0.074 Score=43.05 Aligned_cols=22 Identities=23% Similarity=0.359 Sum_probs=19.7
Q ss_pred EEEeCCCCccHHHHHHHHHHHH
Q 017884 77 LLLYGPPGTGKTSTILAVARKL 98 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l 98 (364)
+++.|++|+|||+++.++...-
T Consensus 3 i~~vG~~~vGKTsli~~l~~~~ 24 (168)
T cd04119 3 VISMGNSGVGKSCIIKRYCEGR 24 (168)
T ss_pred EEEECCCCCCHHHHHHHHHhCC
Confidence 7899999999999999998753
No 492
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=96.55 E-value=0.0029 Score=58.49 Aligned_cols=55 Identities=24% Similarity=0.385 Sum_probs=43.1
Q ss_pred hhccCCC---CCcchhccHHHHHHHHHHHhcCCCCcEEEeCCCCccHHHHHHHHHHHHcCCCC
Q 017884 44 VEKYRPQ---SLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQY 103 (364)
Q Consensus 44 ~~~~~p~---~~~~~vg~~~~~~~l~~~~~~~~~~~lll~G~~G~GKt~la~~l~~~l~~~~~ 103 (364)
+...||. ++++.--.+.+++.|..-. ..+|+.||||.||||+|+++|..+...+.
T Consensus 235 ITavRPvvk~~ledY~L~dkl~eRL~era-----eGILIAG~PGaGKsTFaqAlAefy~~~Gk 292 (604)
T COG1855 235 ITAVRPVVKLSLEDYGLSDKLKERLEERA-----EGILIAGAPGAGKSTFAQALAEFYASQGK 292 (604)
T ss_pred EEEEeeeEEechhhcCCCHHHHHHHHhhh-----cceEEecCCCCChhHHHHHHHHHHHhcCc
Confidence 4445674 7888877788877776543 44999999999999999999999876553
No 493
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=96.55 E-value=0.025 Score=50.33 Aligned_cols=41 Identities=20% Similarity=0.257 Sum_probs=31.0
Q ss_pred HHHHHHHHHHhcCCCCcEEEeCCCCccHHHHHHHHHHHHcC
Q 017884 60 DIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYG 100 (364)
Q Consensus 60 ~~~~~l~~~~~~~~~~~lll~G~~G~GKt~la~~l~~~l~~ 100 (364)
......+..+.......+-|.|+||+||||++..+.+.+..
T Consensus 90 ~~a~~~r~~~~~~~~~~v~l~G~pGsGKTTLl~~l~~~l~~ 130 (290)
T PRK10463 90 RLAERNRARFAARKQLVLNLVSSPGSGKTTLLTETLMRLKD 130 (290)
T ss_pred HHHHHHHHHHHhcCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 33335556665555555899999999999999999998743
No 494
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.55 E-value=0.0031 Score=52.23 Aligned_cols=26 Identities=27% Similarity=0.337 Sum_probs=23.1
Q ss_pred cEEEeCCCCccHHHHHHHHHHHHcCC
Q 017884 76 HLLLYGPPGTGKTSTILAVARKLYGA 101 (364)
Q Consensus 76 ~lll~G~~G~GKt~la~~l~~~l~~~ 101 (364)
.++|.|++|+||||+++.+++.+...
T Consensus 9 ~I~i~G~~GsGKst~a~~l~~~l~~~ 34 (176)
T PRK05541 9 VIWITGLAGSGKTTIAKALYERLKLK 34 (176)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 37999999999999999999998543
No 495
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.55 E-value=0.0024 Score=53.36 Aligned_cols=25 Identities=24% Similarity=0.476 Sum_probs=22.3
Q ss_pred CCcEEEeCCCCccHHHHHHHHHHHH
Q 017884 74 LPHLLLYGPPGTGKTSTILAVARKL 98 (364)
Q Consensus 74 ~~~lll~G~~G~GKt~la~~l~~~l 98 (364)
.+.+++.|+||+||||+++.+++.+
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 3458999999999999999999886
No 496
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=96.55 E-value=0.079 Score=43.06 Aligned_cols=22 Identities=41% Similarity=0.664 Sum_probs=19.4
Q ss_pred cEEEeCCCCccHHHHHHHHHHH
Q 017884 76 HLLLYGPPGTGKTSTILAVARK 97 (364)
Q Consensus 76 ~lll~G~~G~GKt~la~~l~~~ 97 (364)
.+++.|++|+|||+++.++...
T Consensus 4 ki~i~G~~~vGKSsli~~~~~~ 25 (166)
T cd01869 4 KLLLIGDSGVGKSCLLLRFADD 25 (166)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3789999999999999999764
No 497
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=96.55 E-value=0.0062 Score=53.91 Aligned_cols=33 Identities=30% Similarity=0.372 Sum_probs=26.1
Q ss_pred EEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEE
Q 017884 77 LLLYGPPGTGKTSTILAVARKLYGAQYHNMILE 109 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~ 109 (364)
++++|+||+|||+++..++......+....++.
T Consensus 26 ~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs 58 (260)
T COG0467 26 VLITGPPGTGKTIFALQFLYEGAREGEPVLYVS 58 (260)
T ss_pred EEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEE
Confidence 799999999999999999988766544443333
No 498
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=96.54 E-value=0.012 Score=49.91 Aligned_cols=22 Identities=27% Similarity=0.445 Sum_probs=19.7
Q ss_pred cEEEeCCCCccHHHHHHHHHHH
Q 017884 76 HLLLYGPPGTGKTSTILAVARK 97 (364)
Q Consensus 76 ~lll~G~~G~GKt~la~~l~~~ 97 (364)
.++|+||.|+|||++.+.++..
T Consensus 31 ~~~l~G~Ng~GKStll~~i~~~ 52 (202)
T cd03243 31 LLLITGPNMGGKSTYLRSIGLA 52 (202)
T ss_pred EEEEECCCCCccHHHHHHHHHH
Confidence 4899999999999999999843
No 499
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=96.53 E-value=0.0017 Score=53.02 Aligned_cols=22 Identities=36% Similarity=0.667 Sum_probs=20.4
Q ss_pred EEEeCCCCccHHHHHHHHHHHH
Q 017884 77 LLLYGPPGTGKTSTILAVARKL 98 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l 98 (364)
+++.||+|+||||+++.+++.+
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRL 22 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhc
Confidence 4789999999999999999987
No 500
>PHA00350 putative assembly protein
Probab=96.53 E-value=0.0093 Score=55.47 Aligned_cols=52 Identities=15% Similarity=0.177 Sum_probs=35.5
Q ss_pred ceEEEEEeCCCCCCHHH-----------------------HHHHHHHHHHhcc-CccEEEEeeccccCchhhhccc
Q 017884 141 SVKLVLLDEADAMTKDA-----------------------QFALRRVIEKYTK-NTRFALICNQVNKIIPALQSRC 192 (364)
Q Consensus 141 ~~~viiiDe~~~l~~~~-----------------------~~~L~~~le~~~~-~~~~Il~~~~~~~l~~~l~sr~ 192 (364)
.+.+|||||++.+.+.. -......+..+.. +.-||++|..+..+...++..+
T Consensus 81 ~gaLIViDEaq~~~p~r~~~~~~~~~~~p~~~~~~~~~~~p~~~i~~l~~HRH~G~DIiliTQ~~~~Id~~iR~lv 156 (399)
T PHA00350 81 RGALYVIDEAQMIFPKRLGFKMANIFKRPFTDFEPHLPEGPENFLEAFMRHRHYNWDIILLTPNIRKIHSDIRAMI 156 (399)
T ss_pred CCCEEEEECchhhcCCCccccccccccccccccccccccCCHHHHHHHHHhcccCceEEEEeCCHHHhhHHHHHhh
Confidence 46799999999884321 1234555554433 4558999988888888887765
Done!