Query 017884
Match_columns 364
No_of_seqs 289 out of 3100
Neff 9.8
Searched_HMMs 29240
Date Mon Mar 25 06:28:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017884.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017884hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1sxj_C Activator 1 40 kDa subu 100.0 4E-46 1.4E-50 342.6 33.8 321 36-359 8-334 (340)
2 2chq_A Replication factor C sm 100.0 2.5E-44 8.5E-49 327.8 29.3 315 39-356 3-317 (319)
3 1iqp_A RFCS; clamp loader, ext 100.0 1.8E-43 6.3E-48 323.2 32.7 315 39-356 11-325 (327)
4 3u61_B DNA polymerase accessor 100.0 1.5E-41 5E-46 310.4 33.4 301 37-355 10-320 (324)
5 1sxj_D Activator 1 41 kDa subu 100.0 1.1E-41 3.9E-46 314.7 31.7 322 32-354 16-352 (353)
6 1sxj_B Activator 1 37 kDa subu 100.0 2.6E-41 8.8E-46 308.4 32.5 313 39-357 7-321 (323)
7 1sxj_E Activator 1 40 kDa subu 100.0 5E-41 1.7E-45 310.6 29.9 312 42-356 3-353 (354)
8 1jr3_A DNA polymerase III subu 100.0 2.4E-37 8.1E-42 287.9 37.2 310 40-355 3-359 (373)
9 2gno_A DNA polymerase III, gam 100.0 7.3E-35 2.5E-39 261.6 23.8 282 57-356 1-298 (305)
10 3pvs_A Replication-associated 100.0 9E-32 3.1E-36 253.8 31.0 298 40-353 13-341 (447)
11 1a5t_A Delta prime, HOLB; zinc 100.0 4.8E-31 1.6E-35 241.2 25.4 285 56-355 5-322 (334)
12 2chg_A Replication factor C sm 100.0 9E-31 3.1E-35 225.5 25.5 222 39-263 3-224 (226)
13 1jr3_D DNA polymerase III, del 100.0 1.6E-31 5.5E-36 245.7 18.6 278 65-354 9-333 (343)
14 1njg_A DNA polymerase III subu 100.0 2.6E-27 9E-32 206.5 23.6 220 39-263 9-249 (250)
15 1sxj_A Activator 1 95 kDa subu 100.0 1.9E-27 6.5E-32 229.5 22.6 241 34-281 20-293 (516)
16 3pfi_A Holliday junction ATP-d 99.9 1.1E-24 3.6E-29 199.8 21.1 209 38-262 14-251 (338)
17 3uk6_A RUVB-like 2; hexameric 99.9 2.7E-24 9.3E-29 199.4 19.5 225 34-263 24-328 (368)
18 1hqc_A RUVB; extended AAA-ATPa 99.9 2.9E-23 9.8E-28 189.1 22.1 205 43-262 2-235 (324)
19 3bos_A Putative DNA replicatio 99.9 4.5E-23 1.5E-27 179.5 17.9 211 38-263 12-241 (242)
20 2c9o_A RUVB-like 1; hexameric 99.9 3.1E-22 1.1E-26 190.3 21.3 121 143-264 297-436 (456)
21 1in4_A RUVB, holliday junction 99.9 1.5E-21 5E-26 178.3 22.8 208 40-263 12-248 (334)
22 1fnn_A CDC6P, cell division co 99.9 7.9E-21 2.7E-25 177.2 26.5 286 40-330 7-344 (389)
23 2v1u_A Cell division control p 99.9 8E-22 2.7E-26 183.7 18.5 217 41-264 10-275 (387)
24 3vfd_A Spastin; ATPase, microt 99.9 2.3E-20 7.8E-25 174.1 24.0 189 42-244 104-326 (389)
25 3b9p_A CG5977-PA, isoform A; A 99.9 4.5E-20 1.5E-24 165.9 23.8 191 42-246 10-236 (297)
26 2qby_B CDC6 homolog 3, cell di 99.9 1.5E-20 5.1E-25 175.1 17.6 220 39-264 9-269 (384)
27 3syl_A Protein CBBX; photosynt 99.8 2.6E-20 8.7E-25 168.4 17.3 200 41-248 11-260 (309)
28 2qp9_X Vacuolar protein sortin 99.8 9.5E-20 3.2E-24 167.5 20.3 193 41-247 39-265 (355)
29 2z4s_A Chromosomal replication 99.8 5.5E-20 1.9E-24 173.6 18.6 213 46-266 97-333 (440)
30 3eie_A Vacuolar protein sortin 99.8 5.9E-20 2E-24 166.9 17.5 196 41-246 6-231 (322)
31 3d8b_A Fidgetin-like protein 1 99.8 4.3E-19 1.5E-23 163.3 21.6 195 43-247 74-299 (357)
32 1lv7_A FTSH; alpha/beta domain 99.8 3.9E-19 1.3E-23 156.4 19.1 205 42-262 1-249 (257)
33 3te6_A Regulatory protein SIR3 99.8 7E-19 2.4E-23 157.4 20.2 191 55-250 22-286 (318)
34 1l8q_A Chromosomal replication 99.8 6.7E-20 2.3E-24 166.8 13.8 187 50-249 8-214 (324)
35 2qby_A CDC6 homolog 1, cell di 99.8 1.3E-18 4.4E-23 161.8 22.7 214 41-264 11-271 (386)
36 4b4t_J 26S protease regulatory 99.8 6.8E-19 2.3E-23 161.2 20.3 201 45-260 140-384 (405)
37 1ofh_A ATP-dependent HSL prote 99.8 1.4E-19 4.9E-24 163.4 15.6 208 53-265 15-299 (310)
38 1xwi_A SKD1 protein; VPS4B, AA 99.8 1.4E-18 4.6E-23 157.6 21.6 190 45-247 4-227 (322)
39 2r44_A Uncharacterized protein 99.8 1.7E-19 5.7E-24 164.7 14.1 211 41-261 15-293 (331)
40 2qz4_A Paraplegin; AAA+, SPG7, 99.8 5.2E-18 1.8E-22 149.4 23.0 186 49-248 2-227 (262)
41 2zan_A Vacuolar protein sortin 99.8 7.7E-19 2.6E-23 166.1 18.6 194 41-247 122-349 (444)
42 3h4m_A Proteasome-activating n 99.8 1.6E-18 5.5E-23 154.8 18.6 206 46-262 10-255 (285)
43 4b4t_I 26S protease regulatory 99.8 4.5E-18 1.6E-22 156.1 20.4 204 42-261 171-419 (437)
44 4b4t_L 26S protease subunit RP 99.8 7.1E-18 2.4E-22 156.9 21.0 199 48-261 176-418 (437)
45 4b4t_M 26S protease regulatory 99.8 2.7E-18 9.3E-23 159.5 17.9 204 45-263 173-420 (434)
46 3pxg_A Negative regulator of g 99.8 1.6E-18 5.5E-23 165.0 15.6 195 39-248 166-383 (468)
47 4b4t_H 26S protease regulatory 99.8 9.6E-18 3.3E-22 155.5 19.2 170 50-234 206-413 (467)
48 1g8p_A Magnesium-chelatase 38 99.8 1.8E-18 6E-23 159.0 14.1 216 45-262 16-319 (350)
49 4b4t_K 26S protease regulatory 99.8 4.2E-17 1.4E-21 151.5 20.9 198 49-261 168-410 (428)
50 4fcw_A Chaperone protein CLPB; 99.8 7.1E-18 2.4E-22 152.4 14.2 186 53-248 17-276 (311)
51 1jbk_A CLPB protein; beta barr 99.8 3.4E-18 1.2E-22 143.0 10.6 164 40-209 9-194 (195)
52 2ce7_A Cell division protein F 99.8 5.7E-17 2E-21 153.1 19.8 199 48-262 11-253 (476)
53 3cf0_A Transitional endoplasmi 99.7 3.4E-17 1.2E-21 147.2 17.0 187 46-247 8-233 (301)
54 1qvr_A CLPB protein; coiled co 99.7 6.4E-18 2.2E-22 172.3 12.8 203 40-248 157-390 (854)
55 2bjv_A PSP operon transcriptio 99.7 7E-17 2.4E-21 142.5 16.7 204 51-258 4-250 (265)
56 2p65_A Hypothetical protein PF 99.7 1.4E-17 4.7E-22 138.6 10.1 158 38-201 7-187 (187)
57 3m6a_A ATP-dependent protease 99.7 5.2E-17 1.8E-21 157.1 13.7 203 52-265 80-341 (543)
58 3pxi_A Negative regulator of g 99.7 6.8E-17 2.3E-21 163.0 15.1 195 39-248 166-383 (758)
59 1r6b_X CLPA protein; AAA+, N-t 99.7 1.5E-16 5.2E-21 160.6 17.5 220 36-262 169-430 (758)
60 1d2n_A N-ethylmaleimide-sensit 99.7 8.5E-17 2.9E-21 142.5 13.1 183 53-250 33-249 (272)
61 2r62_A Cell division protease 99.7 1.9E-18 6.6E-23 152.8 2.3 205 46-265 4-253 (268)
62 1ojl_A Transcriptional regulat 99.7 1.3E-15 4.5E-20 136.8 20.3 203 53-261 2-248 (304)
63 3hu3_A Transitional endoplasmi 99.7 1E-16 3.6E-21 152.5 13.6 188 45-247 196-419 (489)
64 1um8_A ATP-dependent CLP prote 99.7 1.9E-16 6.7E-21 146.9 13.3 203 54-262 22-362 (376)
65 3pxi_A Negative regulator of g 99.7 3.7E-16 1.3E-20 157.6 15.0 185 53-247 491-721 (758)
66 3k1j_A LON protease, ATP-depen 99.7 9.6E-16 3.3E-20 150.5 14.7 219 43-263 31-373 (604)
67 1r6b_X CLPA protein; AAA+, N-t 99.6 1.6E-15 5.5E-20 153.1 16.2 182 53-247 458-712 (758)
68 2dhr_A FTSH; AAA+ protein, hex 99.6 1.6E-15 5.5E-20 144.0 15.0 207 43-262 22-268 (499)
69 1ixz_A ATP-dependent metallopr 99.6 9.7E-15 3.3E-19 127.9 17.7 206 45-262 8-253 (254)
70 1w5s_A Origin recognition comp 99.6 1.2E-14 4.3E-19 136.2 18.8 218 42-262 14-290 (412)
71 1iy2_A ATP-dependent metallopr 99.6 2.4E-14 8.1E-19 127.2 17.8 204 47-262 34-277 (278)
72 1qvr_A CLPB protein; coiled co 99.6 1.3E-15 4.6E-20 155.2 10.3 187 52-248 557-817 (854)
73 3hws_A ATP-dependent CLP prote 99.6 3.2E-15 1.1E-19 138.0 9.7 189 54-248 16-320 (363)
74 3nbx_X ATPase RAVA; AAA+ ATPas 99.6 1.6E-13 5.3E-18 130.5 21.2 201 53-259 22-280 (500)
75 3cf2_A TER ATPase, transitiona 99.6 1.6E-14 5.3E-19 143.7 14.4 172 48-234 199-405 (806)
76 3cf2_A TER ATPase, transitiona 99.5 1.6E-14 5.5E-19 143.7 8.7 181 49-244 473-695 (806)
77 3n70_A Transport activator; si 99.5 9.9E-14 3.4E-18 110.6 10.6 132 54-200 2-144 (145)
78 2x8a_A Nuclear valosin-contain 99.5 1.5E-12 5.1E-17 115.0 18.4 172 49-230 6-210 (274)
79 1g41_A Heat shock protein HSLU 99.5 6.2E-13 2.1E-17 123.8 15.4 124 141-264 250-432 (444)
80 3t15_A Ribulose bisphosphate c 99.5 1.5E-12 5.2E-17 116.2 17.2 148 77-237 39-221 (293)
81 2qen_A Walker-type ATPase; unk 99.4 7.3E-12 2.5E-16 114.5 19.1 185 51-245 10-248 (350)
82 3f9v_A Minichromosome maintena 99.4 8.8E-14 3E-18 135.7 6.4 205 52-261 294-583 (595)
83 3co5_A Putative two-component 99.4 3.8E-13 1.3E-17 106.9 8.1 128 54-200 5-142 (143)
84 1ypw_A Transitional endoplasmi 99.4 5E-12 1.7E-16 127.6 13.7 180 46-240 197-411 (806)
85 3dzd_A Transcriptional regulat 99.3 2.8E-11 9.6E-16 111.3 17.1 193 53-250 129-361 (368)
86 3ec2_A DNA replication protein 99.3 1.3E-11 4.3E-16 102.1 12.6 131 45-183 2-145 (180)
87 1ny5_A Transcriptional regulat 99.3 5.2E-11 1.8E-15 110.4 17.2 204 52-259 136-381 (387)
88 2fna_A Conserved hypothetical 99.3 8.9E-11 3.1E-15 107.4 17.7 184 51-246 11-253 (357)
89 1ypw_A Transitional endoplasmi 99.3 6.5E-14 2.2E-18 141.3 -5.2 156 46-215 470-663 (806)
90 1u0j_A DNA replication protein 99.2 2.2E-10 7.4E-15 99.2 12.5 138 60-222 88-259 (267)
91 3upu_A ATP-dependent DNA helic 99.1 1.8E-10 6.1E-15 109.4 10.2 140 35-180 6-164 (459)
92 2kjq_A DNAA-related protein; s 99.1 4.8E-10 1.6E-14 89.4 9.0 98 75-192 37-139 (149)
93 2w58_A DNAI, primosome compone 99.1 2.9E-10 1E-14 95.6 8.2 131 43-181 15-159 (202)
94 1tue_A Replication protein E1; 99.0 1E-09 3.6E-14 90.6 8.7 120 60-201 43-180 (212)
95 3f8t_A Predicted ATPase involv 99.0 1.4E-08 4.7E-13 94.2 16.8 165 55-231 215-426 (506)
96 4akg_A Glutathione S-transfera 99.0 6.9E-09 2.4E-13 114.9 16.8 145 65-215 1260-1433(2695)
97 2qgz_A Helicase loader, putati 99.0 7.1E-10 2.4E-14 99.4 6.4 131 43-181 114-258 (308)
98 1z6t_A APAF-1, apoptotic prote 98.7 1.5E-07 5.1E-12 92.2 14.2 184 48-245 119-330 (591)
99 4akg_A Glutathione S-transfera 98.6 2.1E-06 7.1E-11 95.6 19.0 166 61-246 634-836 (2695)
100 3vkg_A Dynein heavy chain, cyt 98.5 9.1E-07 3.1E-11 99.0 15.1 178 64-248 1296-1525(3245)
101 3sfz_A APAF-1, apoptotic pepti 98.5 4E-06 1.4E-10 88.9 19.1 188 48-246 119-331 (1249)
102 2a5y_B CED-4; apoptosis; HET: 98.5 1.3E-06 4.5E-11 84.6 14.1 177 56-242 131-336 (549)
103 2r2a_A Uncharacterized protein 98.3 4.3E-07 1.5E-11 75.7 5.5 60 141-200 87-153 (199)
104 1ye8_A Protein THEP1, hypothet 98.3 2E-06 6.9E-11 70.4 9.2 69 141-211 99-174 (178)
105 2orw_A Thymidine kinase; TMTK, 98.3 6.5E-07 2.2E-11 73.8 5.0 114 77-199 6-138 (184)
106 1vt4_I APAF-1 related killer D 98.3 1.9E-05 6.5E-10 80.3 15.9 148 56-213 131-311 (1221)
107 3vkg_A Dynein heavy chain, cyt 98.1 5.9E-05 2E-09 84.8 17.2 167 60-246 592-796 (3245)
108 2vhj_A Ntpase P4, P4; non- hyd 98.0 2.7E-05 9.2E-10 69.1 10.6 65 77-155 126-196 (331)
109 1jql_B DNA polymerase III, del 98.0 7.2E-05 2.5E-09 58.4 11.3 122 67-197 11-139 (140)
110 2b8t_A Thymidine kinase; deoxy 97.9 7.8E-06 2.7E-10 69.2 4.3 95 77-179 15-124 (223)
111 2r8r_A Sensor protein; KDPD, P 97.8 9.3E-05 3.2E-09 62.2 8.9 157 77-241 9-202 (228)
112 3e1s_A Exodeoxyribonuclease V, 97.8 1.8E-05 6.3E-10 76.7 4.8 113 59-180 192-315 (574)
113 1g5t_A COB(I)alamin adenosyltr 97.6 9E-05 3.1E-09 60.9 6.6 107 75-192 29-171 (196)
114 2j9r_A Thymidine kinase; TK1, 97.6 0.00013 4.3E-09 60.9 7.4 100 77-179 31-136 (214)
115 3cmu_A Protein RECA, recombina 97.6 0.00021 7.3E-09 77.5 10.6 41 65-105 1415-1458(2050)
116 2cvh_A DNA repair and recombin 97.6 0.00097 3.3E-08 55.9 12.8 33 77-114 23-55 (220)
117 2orv_A Thymidine kinase; TP4A 97.5 0.00062 2.1E-08 57.3 10.3 97 77-178 22-123 (234)
118 2iut_A DNA translocase FTSK; n 97.5 0.0029 9.9E-08 60.6 16.0 69 142-210 344-420 (574)
119 1xx6_A Thymidine kinase; NESG, 97.5 8.2E-05 2.8E-09 61.3 4.3 93 77-178 11-115 (191)
120 3dl0_A Adenylate kinase; phosp 97.4 0.003 1E-07 52.8 13.5 22 77-98 3-24 (216)
121 3io5_A Recombination and repai 97.4 0.0024 8.2E-08 56.4 13.0 51 64-114 13-68 (333)
122 1w36_D RECD, exodeoxyribonucle 97.4 0.00019 6.5E-09 70.2 6.7 102 75-180 165-298 (608)
123 2fz4_A DNA repair protein RAD2 97.4 0.0014 4.7E-08 56.0 10.9 38 58-98 95-132 (237)
124 2zr9_A Protein RECA, recombina 97.4 0.00079 2.7E-08 61.0 9.8 25 77-101 64-88 (349)
125 1xp8_A RECA protein, recombina 97.3 0.002 6.8E-08 58.7 11.9 25 77-101 77-101 (366)
126 1n0w_A DNA repair protein RAD5 97.3 0.0023 7.8E-08 54.5 11.8 38 77-114 27-68 (243)
127 1ly1_A Polynucleotide kinase; 97.3 0.00067 2.3E-08 54.9 7.6 21 77-97 5-25 (181)
128 3dm5_A SRP54, signal recogniti 97.3 0.0036 1.2E-07 58.2 13.2 29 77-105 103-131 (443)
129 3tlx_A Adenylate kinase 2; str 97.3 0.006 2.1E-07 52.1 13.9 23 76-98 31-53 (243)
130 1u94_A RECA protein, recombina 97.3 0.0012 4.2E-08 59.9 9.9 34 77-112 66-99 (356)
131 3hr8_A Protein RECA; alpha and 97.3 0.0023 7.7E-08 58.0 11.5 48 64-113 48-98 (356)
132 1w4r_A Thymidine kinase; type 97.3 0.0004 1.4E-08 56.9 5.9 95 77-178 23-124 (195)
133 1v5w_A DMC1, meiotic recombina 97.3 0.0027 9.2E-08 57.4 12.1 50 65-114 111-166 (343)
134 2w0m_A SSO2452; RECA, SSPF, un 97.3 0.0011 3.7E-08 56.1 9.0 23 77-99 26-48 (235)
135 3a4m_A L-seryl-tRNA(SEC) kinas 97.3 0.001 3.4E-08 57.7 8.8 24 76-99 6-29 (260)
136 3fb4_A Adenylate kinase; psych 97.3 0.0035 1.2E-07 52.4 11.9 22 77-98 3-24 (216)
137 2i3b_A HCR-ntpase, human cance 97.2 0.0015 5.3E-08 53.6 9.0 70 141-212 105-183 (189)
138 3lw7_A Adenylate kinase relate 97.2 0.0011 3.8E-08 53.2 7.7 22 76-98 3-24 (179)
139 3zvl_A Bifunctional polynucleo 97.1 0.0012 4.1E-08 61.4 7.9 75 77-169 261-335 (416)
140 2dr3_A UPF0273 protein PH0284; 97.1 0.0035 1.2E-07 53.4 10.4 23 77-99 26-48 (247)
141 3crm_A TRNA delta(2)-isopenten 97.1 0.0015 5E-08 58.2 8.0 23 76-98 7-29 (323)
142 3jvv_A Twitching mobility prot 97.0 0.0055 1.9E-07 55.5 11.7 46 49-99 103-148 (356)
143 1nrj_B SR-beta, signal recogni 97.0 0.0034 1.2E-07 52.4 9.7 106 72-184 10-133 (218)
144 3b6e_A Interferon-induced heli 97.0 0.0014 4.8E-08 54.6 7.0 37 59-98 36-72 (216)
145 3kl4_A SRP54, signal recogniti 97.0 0.0045 1.5E-07 57.5 10.8 33 77-109 100-132 (433)
146 4gp7_A Metallophosphoesterase; 97.0 0.0012 4E-08 53.3 6.0 17 77-93 12-28 (171)
147 1pzn_A RAD51, DNA repair and r 96.9 0.0082 2.8E-07 54.3 11.9 22 77-98 134-155 (349)
148 3fmo_B ATP-dependent RNA helic 96.9 0.004 1.4E-07 55.1 9.6 51 49-99 91-157 (300)
149 3cmw_A Protein RECA, recombina 96.9 0.0015 5.1E-08 70.2 7.8 25 77-101 1085-1109(1706)
150 3e2i_A Thymidine kinase; Zn-bi 96.9 0.00079 2.7E-08 56.0 4.5 35 141-178 101-135 (219)
151 3trf_A Shikimate kinase, SK; a 96.9 0.00068 2.3E-08 55.3 4.1 24 75-98 6-29 (185)
152 3lda_A DNA repair protein RAD5 96.9 0.0082 2.8E-07 55.3 11.6 38 77-114 181-222 (400)
153 2ius_A DNA translocase FTSK; n 96.9 0.012 4.1E-07 55.8 12.7 69 142-210 298-374 (512)
154 1svm_A Large T antigen; AAA+ f 96.8 0.0043 1.5E-07 56.7 9.3 23 76-98 171-193 (377)
155 2ehv_A Hypothetical protein PH 96.8 0.0025 8.6E-08 54.5 7.4 20 77-96 33-52 (251)
156 2pt7_A CAG-ALFA; ATPase, prote 96.8 0.0068 2.3E-07 54.4 10.3 37 61-99 160-196 (330)
157 1t6n_A Probable ATP-dependent 96.8 0.012 4.2E-07 49.1 11.5 42 141-182 158-201 (220)
158 3h1t_A Type I site-specific re 96.8 0.002 6.7E-08 62.9 7.3 43 58-101 183-225 (590)
159 2eyu_A Twitching motility prot 96.8 0.0031 1.1E-07 54.6 7.8 24 76-99 27-50 (261)
160 2ga8_A Hypothetical 39.9 kDa p 96.8 0.00098 3.4E-08 59.9 4.6 39 61-99 11-49 (359)
161 1qhx_A CPT, protein (chloramph 96.8 0.00065 2.2E-08 55.0 3.2 23 76-98 5-27 (178)
162 1kht_A Adenylate kinase; phosp 96.8 0.0013 4.5E-08 53.7 4.9 27 76-102 5-31 (192)
163 1nks_A Adenylate kinase; therm 96.8 0.00097 3.3E-08 54.6 4.0 28 76-103 3-30 (194)
164 3llm_A ATP-dependent RNA helic 96.7 0.015 5.1E-07 49.3 11.5 21 75-95 77-97 (235)
165 3kb2_A SPBC2 prophage-derived 96.7 0.00095 3.2E-08 53.6 3.7 23 76-98 3-25 (173)
166 3exa_A TRNA delta(2)-isopenten 96.7 0.0058 2E-07 53.9 8.8 23 76-98 5-27 (322)
167 3cmu_A Protein RECA, recombina 96.7 0.0047 1.6E-07 67.3 9.4 29 77-105 1084-1112(2050)
168 3iij_A Coilin-interacting nucl 96.7 0.0013 4.4E-08 53.4 4.0 24 75-98 12-35 (180)
169 3vaa_A Shikimate kinase, SK; s 96.7 0.0013 4.4E-08 54.5 4.0 24 75-98 26-49 (199)
170 1vec_A ATP-dependent RNA helic 96.6 0.0086 2.9E-07 49.4 9.1 39 141-179 146-185 (206)
171 3pey_A ATP-dependent RNA helic 96.6 0.0084 2.9E-07 54.7 9.9 39 141-179 145-185 (395)
172 1via_A Shikimate kinase; struc 96.6 0.0013 4.6E-08 53.1 3.7 24 75-98 5-28 (175)
173 1qde_A EIF4A, translation init 96.6 0.0053 1.8E-07 51.5 7.6 40 141-180 155-195 (224)
174 1zuh_A Shikimate kinase; alpha 96.6 0.002 7E-08 51.5 4.7 25 74-98 7-31 (168)
175 3nh6_A ATP-binding cassette SU 96.6 0.0038 1.3E-07 55.3 6.7 42 141-182 208-250 (306)
176 1hv8_A Putative ATP-dependent 96.6 0.0079 2.7E-07 54.3 9.0 39 141-179 147-186 (367)
177 1kag_A SKI, shikimate kinase I 96.5 0.0014 4.7E-08 52.7 3.3 23 76-98 6-28 (173)
178 4b3f_X DNA-binding protein smu 96.5 0.0042 1.4E-07 61.2 7.4 42 58-101 191-232 (646)
179 2iyv_A Shikimate kinase, SK; t 96.5 0.0018 6.2E-08 52.7 4.1 24 75-98 3-26 (184)
180 3cmw_A Protein RECA, recombina 96.5 0.0099 3.4E-07 64.0 10.5 68 77-154 735-823 (1706)
181 2r6a_A DNAB helicase, replicat 96.5 0.036 1.2E-06 52.0 13.4 23 77-99 206-228 (454)
182 3bh0_A DNAB-like replicative h 96.5 0.017 5.8E-07 51.4 10.7 47 64-113 57-105 (315)
183 3fht_A ATP-dependent RNA helic 96.5 0.014 4.7E-07 53.7 10.4 39 141-179 168-208 (412)
184 1ltq_A Polynucleotide kinase; 96.5 0.007 2.4E-07 53.4 8.1 22 77-98 5-26 (301)
185 4eun_A Thermoresistant glucoki 96.5 0.0019 6.5E-08 53.5 4.0 24 75-98 30-53 (200)
186 2ze6_A Isopentenyl transferase 96.5 0.0023 8E-08 55.1 4.6 23 76-98 3-25 (253)
187 1gvn_B Zeta; postsegregational 96.4 0.0033 1.1E-07 55.3 5.4 22 77-98 36-57 (287)
188 4dkx_A RAS-related protein RAB 96.4 0.023 7.9E-07 47.5 10.4 22 77-98 16-37 (216)
189 3uie_A Adenylyl-sulfate kinase 96.4 0.0026 8.8E-08 52.6 4.4 24 76-99 27-50 (200)
190 3gfo_A Cobalt import ATP-bindi 96.4 0.016 5.4E-07 50.5 9.5 43 141-183 161-206 (275)
191 2yvu_A Probable adenylyl-sulfa 96.4 0.0019 6.5E-08 52.7 3.4 26 77-102 16-41 (186)
192 1rif_A DAR protein, DNA helica 96.4 0.026 8.8E-07 49.2 10.9 38 58-98 115-152 (282)
193 2rhm_A Putative kinase; P-loop 96.4 0.0018 6E-08 53.1 3.1 22 77-98 8-29 (193)
194 3t61_A Gluconokinase; PSI-biol 96.4 0.002 6.9E-08 53.3 3.5 23 76-98 20-42 (202)
195 1rz3_A Hypothetical protein rb 96.4 0.0046 1.6E-07 51.2 5.6 40 60-99 5-47 (201)
196 1e6c_A Shikimate kinase; phosp 96.4 0.0025 8.6E-08 51.1 3.9 24 75-98 3-26 (173)
197 3cm0_A Adenylate kinase; ATP-b 96.3 0.0022 7.6E-08 52.2 3.6 22 77-98 7-28 (186)
198 2gxq_A Heat resistant RNA depe 96.3 0.017 6E-07 47.5 9.2 40 141-180 144-184 (207)
199 1y63_A LMAJ004144AAA protein; 96.3 0.0026 8.8E-08 51.9 3.9 24 75-98 11-34 (184)
200 1aky_A Adenylate kinase; ATP:A 96.3 0.0027 9.1E-08 53.4 4.0 24 75-98 5-28 (220)
201 2p5t_B PEZT; postsegregational 96.3 0.0037 1.3E-07 53.8 5.0 22 77-98 35-56 (253)
202 1vma_A Cell division protein F 96.3 0.012 4.2E-07 52.0 8.4 27 77-103 107-133 (306)
203 1kgd_A CASK, peripheral plasma 96.3 0.0026 8.9E-08 51.7 3.7 22 77-98 8-29 (180)
204 1p9r_A General secretion pathw 96.3 0.0084 2.9E-07 55.5 7.3 51 50-101 144-194 (418)
205 3c8u_A Fructokinase; YP_612366 96.3 0.0042 1.4E-07 51.7 4.8 39 61-99 7-47 (208)
206 2c95_A Adenylate kinase 1; tra 96.2 0.0027 9.2E-08 52.1 3.6 24 75-98 10-33 (196)
207 3rlf_A Maltose/maltodextrin im 96.2 0.0075 2.6E-07 55.0 6.7 42 141-182 151-195 (381)
208 2plr_A DTMP kinase, probable t 96.2 0.0027 9.3E-08 52.7 3.5 25 77-101 7-31 (213)
209 2cdn_A Adenylate kinase; phosp 96.2 0.0028 9.5E-08 52.4 3.5 22 77-98 23-44 (201)
210 2qor_A Guanylate kinase; phosp 96.2 0.0029 9.8E-08 52.5 3.6 23 76-98 14-36 (204)
211 1zak_A Adenylate kinase; ATP:A 96.2 0.0029 1E-07 53.2 3.7 25 75-99 6-30 (222)
212 1tev_A UMP-CMP kinase; ploop, 96.2 0.0028 9.7E-08 51.8 3.5 22 77-98 6-27 (196)
213 3sr0_A Adenylate kinase; phosp 96.2 0.0028 9.6E-08 52.7 3.5 22 77-98 3-24 (206)
214 1wms_A RAB-9, RAB9, RAS-relate 96.2 0.044 1.5E-06 43.6 10.6 21 77-97 10-30 (177)
215 1q0u_A Bstdead; DEAD protein, 96.2 0.022 7.4E-07 47.6 9.1 39 141-179 150-189 (219)
216 1kao_A RAP2A; GTP-binding prot 96.2 0.2 6.9E-06 38.9 14.4 22 77-98 6-27 (167)
217 1xjc_A MOBB protein homolog; s 96.2 0.0042 1.4E-07 49.8 4.2 37 74-110 4-40 (169)
218 1ex7_A Guanylate kinase; subst 96.2 0.003 1E-07 51.6 3.4 23 76-98 3-25 (186)
219 3fmp_B ATP-dependent RNA helic 96.2 0.018 6.3E-07 54.3 9.4 40 141-180 235-276 (479)
220 3bor_A Human initiation factor 96.2 0.012 4E-07 50.0 7.3 39 141-179 173-212 (237)
221 1knq_A Gluconate kinase; ALFA/ 96.2 0.0031 1.1E-07 50.8 3.5 22 77-98 11-32 (175)
222 2ged_A SR-beta, signal recogni 96.2 0.072 2.5E-06 43.1 11.9 24 75-98 49-72 (193)
223 2ce2_X GTPase HRAS; signaling 96.2 0.072 2.5E-06 41.5 11.5 23 76-98 5-27 (166)
224 2wwf_A Thymidilate kinase, put 96.2 0.0031 1.1E-07 52.5 3.5 30 76-105 12-41 (212)
225 2pt5_A Shikimate kinase, SK; a 96.1 0.0034 1.2E-07 50.1 3.6 22 77-98 3-24 (168)
226 2jaq_A Deoxyguanosine kinase; 96.1 0.0033 1.1E-07 51.8 3.6 23 77-99 3-25 (205)
227 2j37_W Signal recognition part 96.1 0.064 2.2E-06 50.8 12.6 33 77-109 104-136 (504)
228 2bwj_A Adenylate kinase 5; pho 96.1 0.003 1E-07 51.9 3.2 23 76-98 14-36 (199)
229 1ak2_A Adenylate kinase isoenz 96.1 0.0042 1.4E-07 52.7 4.2 24 75-98 17-40 (233)
230 3be4_A Adenylate kinase; malar 96.1 0.0031 1E-07 52.9 3.2 24 75-98 6-29 (217)
231 2vli_A Antibiotic resistance p 96.1 0.0023 7.9E-08 51.9 2.3 23 76-98 7-29 (183)
232 3umf_A Adenylate kinase; rossm 96.1 0.0037 1.3E-07 52.4 3.6 22 77-98 32-53 (217)
233 2oxc_A Probable ATP-dependent 96.1 0.016 5.4E-07 48.9 7.6 39 141-179 166-206 (230)
234 1zp6_A Hypothetical protein AT 96.1 0.0027 9.3E-08 51.9 2.7 21 77-97 12-32 (191)
235 1u8z_A RAS-related protein RAL 96.1 0.08 2.7E-06 41.4 11.4 22 77-98 7-28 (168)
236 1nn5_A Similar to deoxythymidy 96.0 0.0037 1.3E-07 52.1 3.5 28 76-103 11-38 (215)
237 1z0j_A RAB-22, RAS-related pro 96.0 0.043 1.5E-06 43.2 9.8 22 77-98 9-30 (170)
238 1zd8_A GTP:AMP phosphotransfer 96.0 0.0033 1.1E-07 53.1 3.1 24 75-98 8-31 (227)
239 2wsm_A Hydrogenase expression/ 96.0 0.0044 1.5E-07 51.9 3.9 45 55-99 11-55 (221)
240 1qf9_A UMP/CMP kinase, protein 96.0 0.0034 1.2E-07 51.2 3.1 22 77-98 9-30 (194)
241 2hf9_A Probable hydrogenase ni 96.0 0.011 3.7E-07 49.6 6.3 43 58-100 22-64 (226)
242 3dz8_A RAS-related protein RAB 96.0 0.044 1.5E-06 44.4 9.9 22 77-98 26-47 (191)
243 3ly5_A ATP-dependent RNA helic 96.0 0.01 3.4E-07 51.4 6.2 38 141-178 201-239 (262)
244 1odf_A YGR205W, hypothetical 3 96.0 0.0092 3.1E-07 52.4 6.0 23 77-99 34-56 (290)
245 2pbr_A DTMP kinase, thymidylat 96.0 0.0041 1.4E-07 50.8 3.5 23 77-99 3-25 (195)
246 3tui_C Methionine import ATP-b 96.0 0.011 3.8E-07 53.5 6.5 42 141-182 181-225 (366)
247 2z0h_A DTMP kinase, thymidylat 96.0 0.0042 1.4E-07 50.9 3.5 25 77-101 3-27 (197)
248 4a1f_A DNAB helicase, replicat 96.0 0.067 2.3E-06 47.9 11.4 35 77-113 49-83 (338)
249 3con_A GTPase NRAS; structural 95.9 0.063 2.2E-06 43.3 10.5 22 77-98 24-45 (190)
250 3tau_A Guanylate kinase, GMP k 95.9 0.0051 1.7E-07 51.2 3.9 23 76-98 10-32 (208)
251 2xb4_A Adenylate kinase; ATP-b 95.9 0.0046 1.6E-07 52.1 3.6 22 77-98 3-24 (223)
252 3fho_A ATP-dependent RNA helic 95.9 0.015 5E-07 55.5 7.5 39 141-179 259-299 (508)
253 1e4v_A Adenylate kinase; trans 95.9 0.0042 1.4E-07 51.9 3.1 22 77-98 3-24 (214)
254 1z0f_A RAB14, member RAS oncog 95.9 0.085 2.9E-06 41.8 11.0 23 76-98 17-39 (179)
255 2q6t_A DNAB replication FORK h 95.9 0.09 3.1E-06 49.1 12.6 48 64-113 189-238 (444)
256 1ukz_A Uridylate kinase; trans 95.9 0.0042 1.4E-07 51.3 3.1 22 77-98 18-39 (203)
257 1np6_A Molybdopterin-guanine d 95.9 0.0088 3E-07 48.3 4.9 38 74-111 6-43 (174)
258 2xau_A PRE-mRNA-splicing facto 95.9 0.068 2.3E-06 53.6 12.3 23 75-97 110-132 (773)
259 2bbw_A Adenylate kinase 4, AK4 95.9 0.005 1.7E-07 52.7 3.5 24 75-98 28-51 (246)
260 1z2a_A RAS-related protein RAB 95.9 0.018 6.2E-07 45.3 6.7 22 77-98 8-29 (168)
261 1cke_A CK, MSSA, protein (cyti 95.9 0.0052 1.8E-07 51.7 3.5 23 76-98 7-29 (227)
262 2bdt_A BH3686; alpha-beta prot 95.8 0.0048 1.7E-07 50.3 3.2 22 77-98 5-26 (189)
263 3iuy_A Probable ATP-dependent 95.8 0.051 1.8E-06 45.5 9.7 39 141-179 167-206 (228)
264 2px0_A Flagellar biosynthesis 95.8 0.026 8.9E-07 49.7 8.1 31 77-107 108-139 (296)
265 3bc1_A RAS-related protein RAB 95.8 0.032 1.1E-06 45.0 8.2 22 77-98 14-35 (195)
266 3clv_A RAB5 protein, putative; 95.8 0.024 8.4E-07 46.2 7.6 23 76-98 9-31 (208)
267 2dyk_A GTP-binding protein; GT 95.8 0.061 2.1E-06 41.9 9.6 23 75-97 2-24 (161)
268 3tr0_A Guanylate kinase, GMP k 95.8 0.0053 1.8E-07 50.7 3.4 22 77-98 10-31 (205)
269 1xti_A Probable ATP-dependent 95.8 0.041 1.4E-06 50.1 9.6 39 141-179 152-192 (391)
270 2z43_A DNA repair and recombin 95.8 0.02 6.9E-07 51.1 7.3 38 77-114 110-151 (324)
271 1m7g_A Adenylylsulfate kinase; 95.8 0.008 2.7E-07 50.1 4.3 24 76-99 27-50 (211)
272 4a74_A DNA repair and recombin 95.8 0.021 7.2E-07 47.9 7.1 23 77-99 28-50 (231)
273 3a00_A Guanylate kinase, GMP k 95.8 0.0052 1.8E-07 50.1 3.1 22 77-98 4-25 (186)
274 3pqc_A Probable GTP-binding pr 95.8 0.35 1.2E-05 38.8 14.4 23 75-97 24-46 (195)
275 3nwj_A ATSK2; P loop, shikimat 95.8 0.011 3.9E-07 50.6 5.3 24 75-98 49-72 (250)
276 2bov_A RAla, RAS-related prote 95.8 0.11 3.9E-06 42.3 11.4 23 76-98 16-38 (206)
277 1lvg_A Guanylate kinase, GMP k 95.7 0.0062 2.1E-07 50.3 3.5 23 76-98 6-28 (198)
278 2v3c_C SRP54, signal recogniti 95.7 0.0094 3.2E-07 55.5 5.1 26 76-101 101-126 (432)
279 2j41_A Guanylate kinase; GMP, 95.7 0.0055 1.9E-07 50.6 3.2 23 76-98 8-30 (207)
280 3ney_A 55 kDa erythrocyte memb 95.7 0.0063 2.1E-07 50.1 3.4 22 77-98 22-43 (197)
281 2a9k_A RAS-related protein RAL 95.7 0.19 6.5E-06 40.1 12.5 22 77-98 21-42 (187)
282 2v54_A DTMP kinase, thymidylat 95.7 0.0046 1.6E-07 51.0 2.7 23 76-98 6-28 (204)
283 3t1o_A Gliding protein MGLA; G 95.7 0.03 1E-06 45.4 7.6 22 77-98 17-38 (198)
284 3llu_A RAS-related GTP-binding 95.7 0.13 4.5E-06 41.8 11.5 22 76-97 22-43 (196)
285 3ld9_A DTMP kinase, thymidylat 95.7 0.0079 2.7E-07 50.6 3.9 39 62-100 9-47 (223)
286 3ber_A Probable ATP-dependent 95.7 0.013 4.5E-07 50.2 5.4 39 141-179 186-225 (249)
287 3lxw_A GTPase IMAP family memb 95.7 0.86 2.9E-05 38.6 17.3 21 77-97 24-44 (247)
288 3q85_A GTP-binding protein REM 95.7 0.054 1.9E-06 42.6 8.8 21 76-96 4-24 (169)
289 4dsu_A GTPase KRAS, isoform 2B 95.6 0.11 3.6E-06 41.7 10.7 22 77-98 7-28 (189)
290 1r2q_A RAS-related protein RAB 95.6 0.11 3.7E-06 40.7 10.5 21 77-97 9-29 (170)
291 4gzl_A RAS-related C3 botulinu 95.6 0.0083 2.8E-07 49.6 3.9 40 59-98 15-54 (204)
292 1s2m_A Putative ATP-dependent 95.6 0.061 2.1E-06 49.2 10.2 38 141-178 163-201 (400)
293 3qf4_A ABC transporter, ATP-bi 95.6 0.023 7.7E-07 55.3 7.4 42 141-182 497-539 (587)
294 2pez_A Bifunctional 3'-phospho 95.6 0.0078 2.7E-07 48.6 3.5 23 77-99 8-30 (179)
295 3tkl_A RAS-related protein RAB 95.6 0.069 2.4E-06 43.2 9.4 22 77-98 19-40 (196)
296 2oca_A DAR protein, ATP-depend 95.6 0.09 3.1E-06 49.9 11.4 38 58-98 115-152 (510)
297 3vkw_A Replicase large subunit 95.6 0.013 4.4E-07 54.3 5.2 92 77-180 164-269 (446)
298 4a82_A Cystic fibrosis transme 95.5 0.02 6.7E-07 55.6 6.6 43 141-183 495-538 (578)
299 1ls1_A Signal recognition part 95.5 0.093 3.2E-06 46.1 10.5 26 77-102 101-126 (295)
300 2efe_B Small GTP-binding prote 95.5 0.11 3.9E-06 41.2 10.3 21 77-97 15-35 (181)
301 3b5x_A Lipid A export ATP-bind 95.5 0.055 1.9E-06 52.5 9.8 42 141-182 498-540 (582)
302 2eyq_A TRCF, transcription-rep 95.5 0.21 7.3E-06 52.4 14.8 40 56-95 606-645 (1151)
303 1tf7_A KAIC; homohexamer, hexa 95.5 0.051 1.7E-06 52.0 9.4 25 77-101 284-308 (525)
304 3dkp_A Probable ATP-dependent 95.5 0.059 2E-06 45.7 8.9 38 141-178 175-217 (245)
305 1gtv_A TMK, thymidylate kinase 95.5 0.0043 1.5E-07 51.6 1.6 23 77-99 3-25 (214)
306 3eiq_A Eukaryotic initiation f 95.5 0.025 8.4E-07 52.1 6.9 39 141-179 183-222 (414)
307 3p32_A Probable GTPase RV1496/ 95.5 0.024 8.3E-07 51.3 6.7 37 75-111 80-116 (355)
308 3tw8_B RAS-related protein RAB 95.5 0.02 6.9E-07 45.7 5.5 22 76-97 11-32 (181)
309 3r20_A Cytidylate kinase; stru 95.4 0.0093 3.2E-07 50.5 3.5 23 76-98 11-33 (233)
310 4dhe_A Probable GTP-binding pr 95.4 0.18 6.3E-06 41.7 11.6 24 74-97 29-52 (223)
311 2va8_A SSO2462, SKI2-type heli 95.4 0.086 2.9E-06 52.5 11.0 20 75-94 47-66 (715)
312 3bgw_A DNAB-like replicative h 95.4 0.11 3.7E-06 48.5 11.0 48 64-114 186-235 (444)
313 3lv8_A DTMP kinase, thymidylat 95.4 0.016 5.5E-07 49.2 4.8 28 77-104 30-57 (236)
314 1svi_A GTP-binding protein YSX 95.4 0.19 6.4E-06 40.6 11.3 24 74-97 23-46 (195)
315 2ew1_A RAS-related protein RAB 95.4 0.088 3E-06 43.2 9.3 24 76-99 28-51 (201)
316 1c1y_A RAS-related protein RAP 95.4 0.23 8E-06 38.6 11.6 22 77-98 6-27 (167)
317 2i1q_A DNA repair and recombin 95.3 0.033 1.1E-06 49.6 7.1 35 64-98 86-122 (322)
318 1sky_E F1-ATPase, F1-ATP synth 95.3 0.015 5.2E-07 54.2 4.9 25 75-99 152-176 (473)
319 1wp9_A ATP-dependent RNA helic 95.3 0.12 4.3E-06 48.0 11.4 35 60-98 13-47 (494)
320 2xgj_A ATP-dependent RNA helic 95.3 0.073 2.5E-06 55.0 10.4 56 38-96 66-123 (1010)
321 2bme_A RAB4A, RAS-related prot 95.3 0.1 3.5E-06 41.7 9.5 22 77-98 13-34 (186)
322 2if2_A Dephospho-COA kinase; a 95.3 0.0085 2.9E-07 49.5 2.9 22 76-98 3-24 (204)
323 1s96_A Guanylate kinase, GMP k 95.3 0.0097 3.3E-07 50.0 3.2 23 77-99 19-41 (219)
324 2j0s_A ATP-dependent RNA helic 95.3 0.039 1.4E-06 50.7 7.6 38 141-178 179-217 (410)
325 2v6i_A RNA helicase; membrane, 95.3 0.08 2.7E-06 49.2 9.7 21 75-95 3-24 (431)
326 2pl3_A Probable ATP-dependent 95.3 0.09 3.1E-06 44.2 9.3 39 141-179 171-210 (236)
327 4f4c_A Multidrug resistance pr 95.3 0.039 1.3E-06 58.8 8.4 24 76-99 446-469 (1321)
328 3tqc_A Pantothenate kinase; bi 95.3 0.024 8.3E-07 50.4 5.8 23 77-99 95-117 (321)
329 1ek0_A Protein (GTP-binding pr 95.2 0.055 1.9E-06 42.5 7.5 22 77-98 6-27 (170)
330 3foz_A TRNA delta(2)-isopenten 95.2 0.013 4.3E-07 51.7 3.8 22 77-98 13-34 (316)
331 1fuu_A Yeast initiation factor 95.2 0.043 1.5E-06 49.9 7.7 40 141-180 162-202 (394)
332 3asz_A Uridine kinase; cytidin 95.2 0.01 3.5E-07 49.3 3.1 22 77-98 9-30 (211)
333 1uj2_A Uridine-cytidine kinase 95.2 0.01 3.5E-07 50.9 3.2 23 77-99 25-47 (252)
334 1z6g_A Guanylate kinase; struc 95.2 0.01 3.5E-07 49.8 3.1 23 76-98 25-47 (218)
335 4edh_A DTMP kinase, thymidylat 95.2 0.018 6.1E-07 48.1 4.6 28 77-104 9-36 (213)
336 2g6b_A RAS-related protein RAB 95.2 0.11 3.8E-06 41.3 9.3 22 77-98 13-34 (180)
337 1jjv_A Dephospho-COA kinase; P 95.2 0.01 3.4E-07 49.2 3.0 20 77-96 5-24 (206)
338 3qf4_B Uncharacterized ABC tra 95.2 0.023 7.8E-07 55.4 6.0 42 141-182 509-551 (598)
339 2fwr_A DNA repair protein RAD2 95.2 0.012 4.1E-07 55.4 3.9 38 58-98 95-132 (472)
340 3ake_A Cytidylate kinase; CMP 95.2 0.012 4.1E-07 48.6 3.5 23 76-98 4-26 (208)
341 3b85_A Phosphate starvation-in 95.2 0.01 3.5E-07 49.4 3.1 42 46-97 4-45 (208)
342 2grj_A Dephospho-COA kinase; T 95.2 0.014 4.8E-07 47.9 3.8 22 77-98 15-36 (192)
343 1z06_A RAS-related protein RAB 95.2 0.083 2.8E-06 42.6 8.5 23 76-98 22-44 (189)
344 1g8f_A Sulfate adenylyltransfe 95.2 0.017 5.8E-07 54.8 4.7 42 59-100 378-421 (511)
345 2hup_A RAS-related protein RAB 95.2 0.066 2.3E-06 43.9 8.0 21 77-97 32-52 (201)
346 4eaq_A DTMP kinase, thymidylat 95.2 0.013 4.3E-07 49.6 3.6 24 77-100 29-52 (229)
347 1htw_A HI0065; nucleotide-bind 95.2 0.012 4.3E-07 46.5 3.3 22 77-98 36-57 (158)
348 1znw_A Guanylate kinase, GMP k 95.1 0.011 3.9E-07 49.0 3.1 23 76-98 22-44 (207)
349 3lxx_A GTPase IMAP family memb 95.1 0.14 4.8E-06 43.2 10.1 22 76-97 31-52 (239)
350 2zpa_A Uncharacterized protein 95.1 0.064 2.2E-06 52.3 8.7 106 60-178 179-286 (671)
351 2erx_A GTP-binding protein DI- 95.1 0.19 6.4E-06 39.4 10.3 22 76-97 5-26 (172)
352 3fe2_A Probable ATP-dependent 95.1 0.053 1.8E-06 46.0 7.4 39 141-179 176-215 (242)
353 3a8t_A Adenylate isopentenyltr 95.1 0.01 3.4E-07 53.0 2.8 23 76-98 42-64 (339)
354 1h65_A Chloroplast outer envel 95.1 0.39 1.3E-05 41.4 13.0 22 76-97 41-62 (270)
355 2xxa_A Signal recognition part 95.1 0.12 4.2E-06 47.9 10.3 35 77-111 103-138 (433)
356 1mh1_A RAC1; GTP-binding, GTPa 95.1 0.027 9.1E-07 45.2 5.2 22 77-98 8-29 (186)
357 4tmk_A Protein (thymidylate ki 95.1 0.023 8E-07 47.4 4.9 27 77-103 6-32 (213)
358 1m7b_A RND3/RHOE small GTP-bin 95.1 0.023 7.9E-07 45.8 4.8 22 77-98 10-31 (184)
359 1j8m_F SRP54, signal recogniti 95.1 0.22 7.5E-06 43.7 11.4 27 77-103 101-127 (297)
360 1ky3_A GTP-binding protein YPT 95.1 0.046 1.6E-06 43.6 6.6 23 76-98 10-32 (182)
361 4e22_A Cytidylate kinase; P-lo 95.1 0.013 4.4E-07 50.4 3.3 23 76-98 29-51 (252)
362 3q72_A GTP-binding protein RAD 95.1 0.057 1.9E-06 42.4 7.0 21 76-96 4-24 (166)
363 4f4c_A Multidrug resistance pr 95.1 0.024 8.3E-07 60.3 6.1 60 141-200 1235-1299(1321)
364 1zbd_A Rabphilin-3A; G protein 95.1 0.061 2.1E-06 44.0 7.4 22 77-98 11-32 (203)
365 2a5j_A RAS-related protein RAB 95.0 0.12 4.1E-06 41.7 9.1 21 77-97 24-44 (191)
366 3c5c_A RAS-like protein 12; GD 95.0 0.16 5.5E-06 40.9 9.9 22 77-98 24-45 (187)
367 2f1r_A Molybdopterin-guanine d 95.0 0.011 3.6E-07 47.6 2.5 39 75-113 3-41 (171)
368 2fh5_B SR-beta, signal recogni 95.0 0.15 5E-06 42.1 9.7 24 75-98 8-31 (214)
369 1rj9_A FTSY, signal recognitio 95.0 0.036 1.2E-06 48.9 6.1 25 77-101 105-129 (304)
370 1uf9_A TT1252 protein; P-loop, 95.0 0.013 4.3E-07 48.3 3.0 21 77-97 11-31 (203)
371 3d3q_A TRNA delta(2)-isopenten 95.0 0.014 4.7E-07 52.3 3.3 23 76-98 9-31 (340)
372 2oap_1 GSPE-2, type II secreti 95.0 0.015 5.1E-07 55.4 3.8 54 44-99 226-285 (511)
373 3b60_A Lipid A export ATP-bind 95.0 0.057 2E-06 52.4 7.9 43 141-183 498-541 (582)
374 2p5s_A RAS and EF-hand domain 94.9 0.065 2.2E-06 43.7 7.3 22 76-97 30-51 (199)
375 2y8e_A RAB-protein 6, GH09086P 94.9 0.11 3.6E-06 41.2 8.3 21 77-97 17-37 (179)
376 3kkq_A RAS-related protein M-R 94.9 0.15 5E-06 40.7 9.2 22 77-98 21-42 (183)
377 3q3j_B RHO-related GTP-binding 94.9 0.035 1.2E-06 46.2 5.5 22 77-98 30-51 (214)
378 2gf0_A GTP-binding protein DI- 94.9 0.16 5.6E-06 41.0 9.5 22 76-97 10-31 (199)
379 2zj8_A DNA helicase, putative 94.9 0.081 2.8E-06 52.7 9.0 24 75-98 40-64 (720)
380 3ozx_A RNAse L inhibitor; ATP 94.9 0.058 2E-06 51.7 7.5 42 141-182 156-198 (538)
381 1r8s_A ADP-ribosylation factor 94.8 0.22 7.7E-06 38.7 10.0 22 77-98 3-24 (164)
382 1gwn_A RHO-related GTP-binding 94.8 0.029 1E-06 46.3 4.8 22 77-98 31-52 (205)
383 2il1_A RAB12; G-protein, GDP, 94.8 0.062 2.1E-06 43.6 6.8 21 77-97 29-49 (192)
384 3reg_A RHO-like small GTPase; 94.8 0.029 9.9E-07 45.6 4.7 22 77-98 26-47 (194)
385 3e70_C DPA, signal recognition 94.8 0.063 2.2E-06 47.9 7.2 27 77-103 132-158 (328)
386 2qt1_A Nicotinamide riboside k 94.8 0.012 4E-07 48.8 2.3 22 77-98 24-45 (207)
387 2p6r_A Afuhel308 helicase; pro 94.8 0.15 5.3E-06 50.5 10.8 39 141-179 138-180 (702)
388 2qmh_A HPR kinase/phosphorylas 94.8 0.012 4.1E-07 48.3 2.2 22 77-98 37-58 (205)
389 1zd9_A ADP-ribosylation factor 94.8 0.16 5.5E-06 40.9 9.2 22 77-98 25-46 (188)
390 2fg5_A RAB-22B, RAS-related pr 94.8 0.086 3E-06 42.7 7.5 22 77-98 26-47 (192)
391 1z63_A Helicase of the SNF2/RA 94.7 0.12 4.1E-06 48.9 9.5 120 58-182 42-189 (500)
392 2j1l_A RHO-related GTP-binding 94.7 0.051 1.8E-06 45.1 6.1 21 77-97 37-57 (214)
393 1vg8_A RAS-related protein RAB 94.7 0.059 2E-06 44.1 6.5 23 76-98 10-32 (207)
394 2atx_A Small GTP binding prote 94.7 0.032 1.1E-06 45.4 4.7 23 76-98 20-42 (194)
395 2z0m_A 337AA long hypothetical 94.7 0.17 6E-06 44.7 10.0 38 141-178 129-167 (337)
396 2gk6_A Regulator of nonsense t 94.7 0.034 1.2E-06 54.4 5.7 40 58-100 182-221 (624)
397 2v9p_A Replication protein E1; 94.7 0.028 9.7E-07 49.6 4.6 23 76-98 128-150 (305)
398 1vht_A Dephospho-COA kinase; s 94.7 0.019 6.3E-07 48.0 3.2 20 77-96 7-26 (218)
399 1pui_A ENGB, probable GTP-bind 94.6 0.18 6.2E-06 41.3 9.3 22 76-97 28-49 (210)
400 3l9o_A ATP-dependent RNA helic 94.6 0.14 4.9E-06 53.4 10.3 38 141-178 290-328 (1108)
401 2jeo_A Uridine-cytidine kinase 94.6 0.022 7.4E-07 48.7 3.5 22 77-98 28-49 (245)
402 1sq5_A Pantothenate kinase; P- 94.6 0.044 1.5E-06 48.5 5.6 23 77-99 83-105 (308)
403 2zts_A Putative uncharacterize 94.6 0.011 3.9E-07 50.2 1.7 21 77-97 33-53 (251)
404 3lnc_A Guanylate kinase, GMP k 94.6 0.012 4.1E-07 49.7 1.8 22 77-98 30-52 (231)
405 2o52_A RAS-related protein RAB 94.5 0.21 7.1E-06 40.8 9.2 22 76-97 27-48 (200)
406 3aez_A Pantothenate kinase; tr 94.5 0.024 8.1E-07 50.4 3.6 24 77-100 93-116 (312)
407 2gks_A Bifunctional SAT/APS ki 94.5 0.036 1.2E-06 53.2 5.0 44 59-102 355-400 (546)
408 3gj0_A GTP-binding nuclear pro 94.4 0.044 1.5E-06 45.7 5.0 21 77-97 18-38 (221)
409 2f7s_A C25KG, RAS-related prot 94.4 0.41 1.4E-05 39.3 11.1 21 77-97 28-48 (217)
410 2gza_A Type IV secretion syste 94.4 0.025 8.7E-07 51.3 3.7 35 63-99 166-200 (361)
411 2yc2_C IFT27, small RAB-relate 94.4 0.053 1.8E-06 44.4 5.3 22 76-97 22-43 (208)
412 1nlf_A Regulatory protein REPA 94.3 0.023 7.9E-07 49.5 3.1 23 77-99 33-55 (279)
413 2ffh_A Protein (FFH); SRP54, s 94.3 0.43 1.5E-05 44.0 11.8 28 77-104 101-128 (425)
414 2www_A Methylmalonic aciduria 94.2 0.065 2.2E-06 48.3 6.0 27 75-101 75-101 (349)
415 1a7j_A Phosphoribulokinase; tr 94.2 0.01 3.5E-07 52.1 0.6 23 77-99 8-30 (290)
416 1q3t_A Cytidylate kinase; nucl 94.2 0.037 1.3E-06 46.8 4.1 23 76-98 18-40 (236)
417 3hjn_A DTMP kinase, thymidylat 94.2 0.036 1.2E-06 45.6 3.8 28 77-104 3-30 (197)
418 2ewv_A Twitching motility prot 94.2 0.028 9.7E-07 51.2 3.5 24 76-99 138-161 (372)
419 2gco_A H9, RHO-related GTP-bin 94.2 0.07 2.4E-06 43.6 5.7 22 77-98 28-49 (201)
420 3cr8_A Sulfate adenylyltranfer 94.2 0.033 1.1E-06 53.5 4.0 42 59-100 352-395 (552)
421 3v9p_A DTMP kinase, thymidylat 94.1 0.023 7.8E-07 47.9 2.6 25 77-101 28-52 (227)
422 2j0v_A RAC-like GTP-binding pr 94.1 0.041 1.4E-06 45.4 4.2 22 77-98 12-33 (212)
423 3cph_A RAS-related protein SEC 94.1 0.1 3.5E-06 42.9 6.6 22 76-97 22-43 (213)
424 2h92_A Cytidylate kinase; ross 94.1 0.03 1E-06 46.7 3.3 23 76-98 5-27 (219)
425 3eph_A TRNA isopentenyltransfe 94.1 0.027 9.3E-07 51.5 3.2 22 77-98 5-26 (409)
426 3j16_B RLI1P; ribosome recycli 94.1 0.14 4.8E-06 49.8 8.3 42 141-182 239-282 (608)
427 3kta_A Chromosome segregation 94.1 0.032 1.1E-06 45.0 3.3 23 77-99 29-51 (182)
428 2fu5_C RAS-related protein RAB 94.1 0.056 1.9E-06 43.3 4.8 21 77-97 11-31 (183)
429 1cr0_A DNA primase/helicase; R 94.1 0.027 9.4E-07 49.4 3.1 23 77-99 38-60 (296)
430 3tif_A Uncharacterized ABC tra 94.0 0.024 8.2E-07 48.1 2.5 42 141-182 163-207 (235)
431 2wjy_A Regulator of nonsense t 94.0 0.058 2E-06 54.3 5.6 40 58-100 358-397 (800)
432 4ag6_A VIRB4 ATPase, type IV s 94.0 0.056 1.9E-06 49.6 5.1 38 73-112 34-71 (392)
433 3thx_A DNA mismatch repair pro 94.0 0.37 1.3E-05 49.2 11.4 20 77-96 665-684 (934)
434 2f6r_A COA synthase, bifunctio 94.0 0.026 8.9E-07 49.3 2.7 20 77-96 78-97 (281)
435 2onk_A Molybdate/tungstate ABC 93.9 0.031 1E-06 47.6 3.1 42 141-182 144-188 (240)
436 2yl4_A ATP-binding cassette SU 93.9 0.081 2.8E-06 51.5 6.4 42 141-182 501-543 (595)
437 2f9l_A RAB11B, member RAS onco 93.9 0.034 1.2E-06 45.5 3.2 22 77-98 8-29 (199)
438 3tqf_A HPR(Ser) kinase; transf 93.9 0.031 1.1E-06 44.6 2.8 22 76-97 18-39 (181)
439 3b9q_A Chloroplast SRP recepto 93.9 0.037 1.3E-06 48.9 3.6 24 77-100 103-126 (302)
440 1m8p_A Sulfate adenylyltransfe 93.9 0.039 1.3E-06 53.3 4.0 23 77-99 399-421 (573)
441 3gmt_A Adenylate kinase; ssgci 93.8 0.04 1.4E-06 46.4 3.6 23 77-99 11-33 (230)
442 2ocp_A DGK, deoxyguanosine kin 93.8 0.029 1E-06 47.6 2.8 23 77-99 5-27 (241)
443 3ice_A Transcription terminati 93.8 0.058 2E-06 49.0 4.8 42 68-109 168-209 (422)
444 1oix_A RAS-related protein RAB 93.8 0.032 1.1E-06 45.4 2.9 23 77-99 32-54 (191)
445 2axn_A 6-phosphofructo-2-kinas 93.7 0.033 1.1E-06 53.2 3.2 24 77-100 38-61 (520)
446 2pcj_A ABC transporter, lipopr 93.7 0.026 8.8E-07 47.5 2.2 41 141-181 158-200 (224)
447 3tmk_A Thymidylate kinase; pho 93.7 0.038 1.3E-06 46.2 3.2 25 76-100 7-31 (216)
448 2cbz_A Multidrug resistance-as 93.7 0.03 1E-06 47.6 2.5 43 141-183 145-191 (237)
449 1sgw_A Putative ABC transporte 93.7 0.031 1.1E-06 46.6 2.5 23 76-98 37-59 (214)
450 1ewq_A DNA mismatch repair pro 93.7 0.29 1E-05 48.8 9.9 23 76-98 578-600 (765)
451 3r7w_A Gtpase1, GTP-binding pr 93.6 0.83 2.9E-05 40.1 11.9 21 77-97 6-26 (307)
452 3ux8_A Excinuclease ABC, A sub 93.6 0.17 5.9E-06 49.9 8.2 41 142-182 565-607 (670)
453 4a4z_A Antiviral helicase SKI2 93.6 0.15 5.3E-06 52.6 8.0 38 141-178 147-185 (997)
454 3g5u_A MCG1178, multidrug resi 93.6 0.087 3E-06 56.0 6.3 42 141-182 544-586 (1284)
455 2xzl_A ATP-dependent helicase 93.6 0.07 2.4E-06 53.7 5.3 38 58-98 362-399 (802)
456 1c9k_A COBU, adenosylcobinamid 93.5 0.037 1.3E-06 44.7 2.7 21 77-97 2-22 (180)
457 2zej_A Dardarin, leucine-rich 93.5 0.034 1.2E-06 44.8 2.6 20 77-96 5-24 (184)
458 3sop_A Neuronal-specific septi 93.5 0.042 1.4E-06 47.7 3.1 23 77-99 5-27 (270)
459 2wji_A Ferrous iron transport 93.5 0.043 1.5E-06 43.4 3.0 21 77-97 6-26 (165)
460 1b0u_A Histidine permease; ABC 93.4 0.034 1.2E-06 48.0 2.5 23 76-98 34-56 (262)
461 2lkc_A Translation initiation 93.4 0.058 2E-06 42.9 3.8 23 75-97 9-31 (178)
462 2whx_A Serine protease/ntpase/ 93.4 0.28 9.6E-06 47.8 9.2 38 141-178 277-315 (618)
463 2z83_A Helicase/nucleoside tri 93.4 0.22 7.4E-06 46.7 8.2 24 75-98 22-46 (459)
464 4f92_B U5 small nuclear ribonu 93.4 0.21 7.1E-06 54.6 9.0 30 64-95 934-963 (1724)
465 1yrb_A ATP(GTP)binding protein 93.4 0.076 2.6E-06 45.5 4.6 35 77-112 17-51 (262)
466 3gee_A MNME, tRNA modification 93.4 0.22 7.6E-06 46.8 8.1 21 77-97 236-256 (476)
467 2nzj_A GTP-binding protein REM 93.3 0.047 1.6E-06 43.2 3.1 22 76-97 6-27 (175)
468 2d2e_A SUFC protein; ABC-ATPas 93.3 0.044 1.5E-06 46.9 3.0 42 141-182 161-204 (250)
469 1mv5_A LMRA, multidrug resista 93.3 0.038 1.3E-06 47.1 2.5 23 76-98 30-52 (243)
470 3fvq_A Fe(3+) IONS import ATP- 93.3 0.038 1.3E-06 49.9 2.6 23 76-98 32-54 (359)
471 3thx_B DNA mismatch repair pro 93.3 0.76 2.6E-05 46.8 12.3 21 77-97 676-696 (918)
472 2zu0_C Probable ATP-dependent 93.3 0.045 1.5E-06 47.4 3.1 42 141-182 182-225 (267)
473 1g6h_A High-affinity branched- 93.3 0.038 1.3E-06 47.6 2.5 43 141-183 171-215 (257)
474 2rcn_A Probable GTPase ENGC; Y 93.3 0.028 9.4E-07 50.8 1.7 23 76-98 217-239 (358)
475 2ff7_A Alpha-hemolysin translo 93.3 0.038 1.3E-06 47.2 2.5 42 141-182 163-205 (247)
476 2og2_A Putative signal recogni 93.3 0.053 1.8E-06 49.0 3.6 24 77-100 160-183 (359)
477 1lw7_A Transcriptional regulat 93.3 0.046 1.6E-06 49.7 3.2 23 77-99 173-195 (365)
478 1wf3_A GTP-binding protein; GT 93.2 0.13 4.4E-06 45.4 5.9 22 76-97 9-30 (301)
479 1ji0_A ABC transporter; ATP bi 93.2 0.039 1.3E-06 47.0 2.5 41 141-181 157-199 (240)
480 1f2t_A RAD50 ABC-ATPase; DNA d 93.2 0.062 2.1E-06 42.0 3.4 24 77-100 26-49 (149)
481 2pze_A Cystic fibrosis transme 93.2 0.041 1.4E-06 46.5 2.5 42 141-182 148-191 (229)
482 2jlq_A Serine protease subunit 93.2 0.31 1.1E-05 45.5 8.9 20 76-95 21-41 (451)
483 4hlc_A DTMP kinase, thymidylat 93.2 0.061 2.1E-06 44.5 3.6 23 77-99 5-27 (205)
484 2olj_A Amino acid ABC transpor 93.2 0.041 1.4E-06 47.5 2.5 41 141-181 177-219 (263)
485 1z08_A RAS-related protein RAB 93.2 0.056 1.9E-06 42.6 3.2 22 77-98 9-30 (170)
486 1zu4_A FTSY; GTPase, signal re 93.2 0.061 2.1E-06 47.9 3.8 26 77-102 108-133 (320)
487 2yhs_A FTSY, cell division pro 93.1 0.058 2E-06 50.7 3.7 24 77-100 296-319 (503)
488 4g1u_C Hemin import ATP-bindin 93.1 0.042 1.4E-06 47.6 2.6 42 141-182 165-209 (266)
489 1z47_A CYSA, putative ABC-tran 93.1 0.048 1.6E-06 49.2 3.0 42 141-182 163-207 (355)
490 1zj6_A ADP-ribosylation factor 93.1 0.088 3E-06 42.4 4.4 24 74-97 16-39 (187)
491 1p5z_B DCK, deoxycytidine kina 93.1 0.019 6.5E-07 49.6 0.3 23 76-98 26-48 (263)
492 3i5x_A ATP-dependent RNA helic 93.1 0.4 1.4E-05 46.0 9.7 38 141-178 226-271 (563)
493 1vpl_A ABC transporter, ATP-bi 93.0 0.044 1.5E-06 47.1 2.5 42 141-182 164-207 (256)
494 2qi9_C Vitamin B12 import ATP- 93.0 0.044 1.5E-06 46.9 2.5 39 144-182 154-194 (249)
495 3g5u_A MCG1178, multidrug resi 93.0 0.13 4.5E-06 54.6 6.7 43 141-183 1189-1232(1284)
496 2it1_A 362AA long hypothetical 93.0 0.051 1.7E-06 49.2 3.1 42 141-182 151-195 (362)
497 2ghi_A Transport protein; mult 93.0 0.043 1.5E-06 47.3 2.5 43 141-183 173-216 (260)
498 2qm8_A GTPase/ATPase; G protei 93.0 0.075 2.6E-06 47.7 4.2 25 76-100 57-81 (337)
499 2ixe_A Antigen peptide transpo 93.0 0.043 1.5E-06 47.6 2.5 42 141-182 174-218 (271)
500 1x6v_B Bifunctional 3'-phospho 93.0 0.058 2E-06 52.4 3.6 24 77-100 55-78 (630)
No 1
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=100.00 E-value=4e-46 Score=342.62 Aligned_cols=321 Identities=45% Similarity=0.798 Sum_probs=290.9
Q ss_pred CCCCCCChhhccCCCCCcchhccHHHHHHHHHHHhcCCCCcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCC
Q 017884 36 PDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDD 115 (364)
Q Consensus 36 ~~~~~~~~~~~~~p~~~~~~vg~~~~~~~l~~~~~~~~~~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~ 115 (364)
....+.||+++|||.+|++++|++.+++.|..++..+..+|++|+||+|+|||++++++++.+.+......+.++++++.
T Consensus 8 ~~~~~~~~~~k~rp~~~~~~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~ 87 (340)
T 1sxj_C 8 RSKENLPWVEKYRPETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDD 87 (340)
T ss_dssp ----CCCHHHHTCCSSGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSC
T ss_pred ccccCCchHHHhCCCcHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCccc
Confidence 33446899999999999999999999999999999999999999999999999999999999988776677889998877
Q ss_pred CChHHHHHHHHHHHhcCccccCCccceEEEEEeCCCCCCHHHHHHHHHHHHHhccCccEEEEeeccccCchhhhccceEE
Q 017884 116 RGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRF 195 (364)
Q Consensus 116 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~l~~~l~sr~~~i 195 (364)
.+.+.+++.+..+...... +.. ++++++|||+|.++...++.|++++++++.++.+|+++|.+.++.+++++||..+
T Consensus 88 ~~~~~ir~~i~~~~~~~~~-~~~--~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR~~~~ 164 (340)
T 1sxj_C 88 RGIDVVRNQIKDFASTRQI-FSK--GFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCTRF 164 (340)
T ss_dssp CSHHHHHTHHHHHHHBCCS-SSC--SCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEE
T ss_pred ccHHHHHHHHHHHHhhccc-CCC--CceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhhceeE
Confidence 7788888877777654332 222 4899999999999999999999999999999999999999999999999999999
Q ss_pred EecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcc-----cCchHHHHHhcCCCChHHH
Q 017884 196 RFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQ-----QITEEAVYLCTGNPLPKDI 270 (364)
Q Consensus 196 ~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~a~~~l~~~~~~~~-----~i~~~~v~~~~~~~~~~~~ 270 (364)
.|.+++.+++.+++..+++++++.+++++++.+++.++|++|.+++.++.+..... .|+.++|..+++...+..+
T Consensus 165 ~~~~l~~~~~~~~l~~~~~~~~~~i~~~~~~~i~~~s~G~~r~~~~~l~~~~~~~~~~~~~~it~~~v~~~~~~~~~~~i 244 (340)
T 1sxj_C 165 RFQPLPQEAIERRIANVLVHEKLKLSPNAEKALIELSNGDMRRVLNVLQSCKATLDNPDEDEISDDVIYECCGAPRPSDL 244 (340)
T ss_dssp ECCCCCHHHHHHHHHHHHHTTTCCBCHHHHHHHHHHHTTCHHHHHHHTTTTTTTTCSSSCCCBCHHHHHHHTTCCCHHHH
T ss_pred eccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCcccccccHHHHHHHhCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999988876554 6999999999999999999
Q ss_pred HHHHHHHHhccHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHHHHHhcCCChHHHHHHHH
Q 017884 271 EQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMP-SDVRVRLMNDLADIEYRLSFGCNDKLQLGSII 349 (364)
Q Consensus 271 ~~l~~~l~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~~~~~~~-~~~~~~i~~~l~~~~~~l~~~~~~~~~l~~l~ 349 (364)
+++++++..+++.+++.++.+++.+.|+++.+++..+.++++.+.++ ...+..+++.+.+++++++.|.++.++|+.++
T Consensus 245 ~~l~~~i~~~~~~~al~~l~~l~~~~g~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~l~le~l~ 324 (340)
T 1sxj_C 245 KAVLKSILEDDWGTAHYTLNKVRSAKGLALIDLIEGIVKILEDYELQNEETRVHLLTKLADIEYSISKGGNDQIQGSAVI 324 (340)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHH
Confidence 99999999999999999999999338999999999999999988888 89999999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 017884 350 STFTQARSAI 359 (364)
Q Consensus 350 ~~l~~~~~~~ 359 (364)
.+++.+.+..
T Consensus 325 ~~l~~~~~~~ 334 (340)
T 1sxj_C 325 GAIKASFENE 334 (340)
T ss_dssp HHHHHHCCC-
T ss_pred HHHHHHhhhc
Confidence 9999876543
No 2
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=100.00 E-value=2.5e-44 Score=327.83 Aligned_cols=315 Identities=37% Similarity=0.692 Sum_probs=285.5
Q ss_pred CCCChhhccCCCCCcchhccHHHHHHHHHHHhcCCCCcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCCCCh
Q 017884 39 KASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGI 118 (364)
Q Consensus 39 ~~~~~~~~~~p~~~~~~vg~~~~~~~l~~~~~~~~~~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~ 118 (364)
+..||+++|+|.+|++++|++..+..+..++..+..+|++|+||+|+|||++++++++.+.+..+...+++++++...+.
T Consensus 3 ~~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~ 82 (319)
T 2chq_A 3 NFEIWVEKYRPRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGI 82 (319)
T ss_dssp ---CTTTTTSCSSGGGSCSCHHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTSTTCT
T ss_pred ccccHHHhcCCCCHHHHhCCHHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCccccCh
Confidence 45799999999999999999999999999999998889999999999999999999999987766667888888876666
Q ss_pred HHHHHHHHHHHhcCccccCCccceEEEEEeCCCCCCHHHHHHHHHHHHHhccCccEEEEeeccccCchhhhccceEEEec
Q 017884 119 DVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFA 198 (364)
Q Consensus 119 ~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~l~~~l~sr~~~i~~~ 198 (364)
+.+++.+..+....++ ... ++++++|||+|.++...++.|++++++++.++++|++++...++.+++.+||..+.|+
T Consensus 83 ~~~~~~~~~~~~~~~~-~~~--~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~i~~~ 159 (319)
T 2chq_A 83 DVVRHKIKEFARTAPI-GGA--PFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFK 159 (319)
T ss_dssp TTSSHHHHHHHHSCCS-SSC--CCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHTTCEEEECC
T ss_pred HHHHHHHHHHHhcCCC-CCC--CceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHhhCeEEEec
Confidence 6666666666544443 112 5899999999999999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCchHHHHHhcCCCChHHHHHHHHHHH
Q 017884 199 PLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLL 278 (364)
Q Consensus 199 ~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~a~~~l~~~~~~~~~i~~~~v~~~~~~~~~~~~~~l~~~l~ 278 (364)
+++.+++..++..++.++++.+++++++.|++.++||+|.+++.++.+....+.|+.++|.++++...+..++++++++.
T Consensus 160 ~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G~~r~~~~~l~~~~~~~~~i~~~~v~~~~~~~~~~~~~~l~~~~~ 239 (319)
T 2chq_A 160 PVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGGDFRKAINALQGAAAIGEVVDADTIYQITATARPEEMTELIQTAL 239 (319)
T ss_dssp CCCHHHHHHHHHHHHHTTCCCBCHHHHHHHHHTTTTCHHHHHHHHHHHHHSSSCBCHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999887777899999999999999999999999999
Q ss_pred hccHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Q 017884 279 NESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDKLQLGSIISTFTQAR 356 (364)
Q Consensus 279 ~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~i~~~l~~~~~~l~~~~~~~~~l~~l~~~l~~~~ 356 (364)
.++...++..+.+++...|.++..++..+.++++.+.++...+..+++.+.+++.+++.|.++.++++.++.+++.++
T Consensus 240 ~~~~~~a~~~l~~l~~~~g~~~~~i~~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~lk~~~~~~~~le~l~~~l~~~~ 317 (319)
T 2chq_A 240 KGNFMEARELLDRLMVEYGMSGEDIVAQLFREIISMPIKDSLKVQLIDKLGEVDFRLTEGANERIQLDAYLAYLSTLA 317 (319)
T ss_dssp HTCHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTSCSCTTHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTT
T ss_pred hCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhh
Confidence 999999999999998438999999999999999987889999999999999999999999999999999999998764
No 3
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=100.00 E-value=1.8e-43 Score=323.20 Aligned_cols=315 Identities=40% Similarity=0.733 Sum_probs=285.7
Q ss_pred CCCChhhccCCCCCcchhccHHHHHHHHHHHhcCCCCcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCCCCh
Q 017884 39 KASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGI 118 (364)
Q Consensus 39 ~~~~~~~~~~p~~~~~~vg~~~~~~~l~~~~~~~~~~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~ 118 (364)
.+.||+++|+|.+|++++|+++++..+..++..+..+|++|+||+|+|||++++++++.+.+..+...++++++++..+.
T Consensus 11 ~~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~~~~ 90 (327)
T 1iqp_A 11 LEKPWVEKYRPQRLDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDERGI 90 (327)
T ss_dssp TTSCHHHHTCCCSTTTCCSCHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHHHH
T ss_pred cCCchhhccCCCCHHHhhCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccccCch
Confidence 46799999999999999999999999999999998889999999999999999999999876655566788887765455
Q ss_pred HHHHHHHHHHHhcCccccCCccceEEEEEeCCCCCCHHHHHHHHHHHHHhccCccEEEEeeccccCchhhhccceEEEec
Q 017884 119 DVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFA 198 (364)
Q Consensus 119 ~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~l~~~l~sr~~~i~~~ 198 (364)
+.+++.+..+....++ +.. ++++++|||+|.++...++.|++++++++.++++|++++.+.++.+++.+||..+.|+
T Consensus 91 ~~~~~~~~~~~~~~~~-~~~--~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~~~ 167 (327)
T 1iqp_A 91 NVIREKVKEFARTKPI-GGA--SFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFR 167 (327)
T ss_dssp HTTHHHHHHHHHSCCG-GGC--SCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTEEEEECC
T ss_pred HHHHHHHHHHHhhCCc-CCC--CCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhCcEEEec
Confidence 5566666666654443 212 5889999999999999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCchHHHHHhcCCCChHHHHHHHHHHH
Q 017884 199 PLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLL 278 (364)
Q Consensus 199 ~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~a~~~l~~~~~~~~~i~~~~v~~~~~~~~~~~~~~l~~~l~ 278 (364)
|++.+++..++..++.++++.+++++++.+++.++||+|.+++.++.+......||.++|...++...+.+++++++++.
T Consensus 168 ~l~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~~~i~~~~v~~~~~~~~~~~i~~l~~~~~ 247 (327)
T 1iqp_A 168 PLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEGDMRRAINILQAAAALDKKITDENVFMVASRARPEDIREMMLLAL 247 (327)
T ss_dssp CCCHHHHHHHHHHHHHTTTCEECHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSEECHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999887777899999999999999999999999999
Q ss_pred hccHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Q 017884 279 NESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDKLQLGSIISTFTQAR 356 (364)
Q Consensus 279 ~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~i~~~l~~~~~~l~~~~~~~~~l~~l~~~l~~~~ 356 (364)
.++...++..+.+++...|.++.+++..+.++++...++...+..+++.+.+++++++.|.++.++++.++.+++.+.
T Consensus 248 ~~~~~~~~~~~~~ll~~~g~~~~~i~~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~lk~~~~~~~~le~l~~~l~~~~ 325 (327)
T 1iqp_A 248 KGNFLKAREKLREILLKQGLSGEDVLVQMHKEVFNLPIEEPKKVLLADKIGEYNFRLVEGANEIIQLEALLAQFTLIG 325 (327)
T ss_dssp HTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHGGGSSSCHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhh
Confidence 999999999998887567999999999999999887899999999999999999999999999999999999998765
No 4
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=100.00 E-value=1.5e-41 Score=310.38 Aligned_cols=301 Identities=24% Similarity=0.361 Sum_probs=259.7
Q ss_pred CCCCCChhhccCCCCCcchhccHHHHHHHHHHHhcCCCCc-EEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCC
Q 017884 37 DIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPH-LLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDD 115 (364)
Q Consensus 37 ~~~~~~~~~~~~p~~~~~~vg~~~~~~~l~~~~~~~~~~~-lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~ 115 (364)
..++.||+++|||.+|++++|+++++..+..++..+..++ ++++||||+|||++++++++.+ ...+++++++..
T Consensus 10 ~~~~~~~~~k~rP~~~~~ivg~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l-----~~~~~~i~~~~~ 84 (324)
T 3u61_B 10 NEKEHILEQKYRPSTIDECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDV-----NADMMFVNGSDC 84 (324)
T ss_dssp CTTCSSHHHHSCCCSTTTSCCCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHT-----TEEEEEEETTTC
T ss_pred CcccchHHHhhCCCCHHHHhCcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHh-----CCCEEEEccccc
Confidence 3567899999999999999999999999999999998888 5888889999999999999997 567888988764
Q ss_pred CChHHHHHHHHHHHhcCccccCCccceEEEEEeCCCCCC-HHHHHHHHHHHHHhccCccEEEEeeccccCchhhhccceE
Q 017884 116 RGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMT-KDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTR 194 (364)
Q Consensus 116 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~-~~~~~~L~~~le~~~~~~~~Il~~~~~~~l~~~l~sr~~~ 194 (364)
+.+.+++.+..+....++ ++ .+++++|||+|.++ .+.++.|++++++++.++++|+++|.+.++.+++++||.+
T Consensus 85 -~~~~i~~~~~~~~~~~~~-~~---~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR~~~ 159 (324)
T 3u61_B 85 -KIDFVRGPLTNFASAASF-DG---RQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRCRV 159 (324)
T ss_dssp -CHHHHHTHHHHHHHBCCC-SS---CEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHHSEE
T ss_pred -CHHHHHHHHHHHHhhccc-CC---CCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhhCcE
Confidence 477778778777776554 33 58999999999999 9999999999999999999999999999999999999999
Q ss_pred EEecCCChHH-------HHHHHHHHHHHcCCCCCH-HHHHHHHHHcCCCHHHHHHHHHHHHHhcccCchHHHHHhcCCCC
Q 017884 195 FRFAPLEPVH-------VTERLKHVIEAEGLDVTE-GGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPL 266 (364)
Q Consensus 195 i~~~~~~~~~-------~~~~l~~~~~~~~~~i~~-~~~~~l~~~~~g~~r~a~~~l~~~~~~~~~i~~~~v~~~~~~~~ 266 (364)
+.|++|+.++ +..++...+..+++.+++ ++++.+++.++||+|.+++.++.++ ..+.||.+++..++..
T Consensus 160 i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gd~R~a~~~L~~~~-~~~~i~~~~v~~~~~~-- 236 (324)
T 3u61_B 160 ITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIADMKVVAALVKKNFPDFRKTIGELDSYS-SKGVLDAGILSLVTND-- 236 (324)
T ss_dssp EECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSCHHHHHHHHHHTCSCTTHHHHHHHHHG-GGTCBCC-----------
T ss_pred EEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhCCCCHHHHHHHHHHHh-ccCCCCHHHHHHHhCC--
Confidence 9999999876 456677777888999988 9999999999999999999999987 5668999999888765
Q ss_pred hHHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhcCCChHHHHH
Q 017884 267 PKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDKLQLG 346 (364)
Q Consensus 267 ~~~~~~l~~~l~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~i~~~l~~~~~~l~~~~~~~~~l~ 346 (364)
...++.+++++..++..+++.++.+++ . ++..++..++.++.. .++...+.++++.++++|++++.|.++.++|+
T Consensus 237 ~~~i~~~~~~~~~~~~~~a~~~~~~l~-~---~~~~i~~~l~~~~~~-~~~~~~l~~i~~~l~~~d~~l~~g~~~~~~le 311 (324)
T 3u61_B 237 RGAIDDVLESLKNKDVKQLRALAPKYA-A---DYSWFVGKLAEEIYS-RVTPQSIIRMYEIVGENNQYHGIAANTELHLA 311 (324)
T ss_dssp ---CHHHHHHHHTTCHHHHHHHHHHHS-S---CHHHHHHHHHHHHHH-HSCHHHHHHHHHHHHHHHHHTTTCSCHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhc-c---CHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 567889999999999999999999887 4 799999999999877 67899999999999999999999999999999
Q ss_pred HHHHHHHHH
Q 017884 347 SIISTFTQA 355 (364)
Q Consensus 347 ~l~~~l~~~ 355 (364)
.+++++|..
T Consensus 312 ~~~~~~~~~ 320 (324)
T 3u61_B 312 YLFIQLACE 320 (324)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999999863
No 5
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=100.00 E-value=1.1e-41 Score=314.71 Aligned_cols=322 Identities=35% Similarity=0.594 Sum_probs=276.9
Q ss_pred CCCCCCCCCCChhhccCCCCCcchhccHHHHHHHHHHHhcCCCCcEEEeCCCCccHHHHHHHHHHHHcCC-CCCCcEEEE
Q 017884 32 SGTPPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA-QYHNMILEL 110 (364)
Q Consensus 32 ~~~~~~~~~~~~~~~~~p~~~~~~vg~~~~~~~l~~~~~~~~~~~lll~G~~G~GKt~la~~l~~~l~~~-~~~~~~~~~ 110 (364)
+....+..+.||+++|+|.+|++++|++++++.+..++..+..+|++|+||||+|||++++++++.+.+. .....+..+
T Consensus 16 ~~~~~~~~~~~~~~k~~p~~~~~i~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~ 95 (353)
T 1sxj_D 16 LAAEQSLAQQPWVEKYRPKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILEL 95 (353)
T ss_dssp ----------CHHHHTCCSSTTTCCSCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEE
T ss_pred cchhhcccCccHHHhcCCCCHHHhhCCHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEE
Confidence 3344456678999999999999999999999999999999988889999999999999999999998643 234567788
Q ss_pred eCCCCCChHHHHHHHHHHHhcCccc-------cCCccceEEEEEeCCCCCCHHHHHHHHHHHHHhccCccEEEEeecccc
Q 017884 111 NASDDRGIDVVRQQIQDFASTQSFS-------FGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNK 183 (364)
Q Consensus 111 ~~~~~~~~~~~~~~i~~~~~~~~~~-------~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~ 183 (364)
++++..+...+++.+..+....... .....++++|+|||++.++...++.|++++++++.++++|++++.+..
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~ 175 (353)
T 1sxj_D 96 NASDERGISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTR 175 (353)
T ss_dssp CSSSCCCHHHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGG
T ss_pred ccccccchHHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhh
Confidence 8877667777766666554431100 011125789999999999999999999999999989999999999999
Q ss_pred CchhhhccceEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcc------cCchHH
Q 017884 184 IIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQ------QITEEA 257 (364)
Q Consensus 184 l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~a~~~l~~~~~~~~------~i~~~~ 257 (364)
+.+++++||..+.|++++.+++..++..++.++++.+++++++.|++.++||+|.+++.++.+....+ .||.++
T Consensus 176 l~~~l~sR~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G~~r~~~~~l~~~~~~~~~~~~~~~It~~~ 255 (353)
T 1sxj_D 176 IIDPLASQCSKFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISAGDLRRGITLLQSASKGAQYLGDGKNITSTQ 255 (353)
T ss_dssp SCHHHHHHSEEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHTSSCHHHHHHHHHHTHHHHHHHCSCCCCCHHH
T ss_pred CcchhhccCceEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCccCccccHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998776542 699999
Q ss_pred HHHhcCCCChHHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHHh
Q 017884 258 VYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKI-KMPSDVRVRLMNDLADIEYRLS 336 (364)
Q Consensus 258 v~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~i~~~l~~~~~~l~ 336 (364)
|..+++......++.+++++..++...++.++.++. ..|+++..++..+.++++.. .++...+..++..+.+++++++
T Consensus 256 v~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~l~-~~g~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~ 334 (353)
T 1sxj_D 256 VEELAGVVPHDILIEIVEKVKSGDFDEIKKYVNTFM-KSGWSAASVVNQLHEYYITNDNFDTNFKNQISWLLFTTDSRLN 334 (353)
T ss_dssp HHHHHTCCCSHHHHHHHHHHHSCCHHHHHHHHHHHH-HTSCCCTTHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHH-HhCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHH
Confidence 999999888889999999999999999999999998 88999999999999998764 6889999999999999999999
Q ss_pred cCCChHHHHHHHHHHHHH
Q 017884 337 FGCNDKLQLGSIISTFTQ 354 (364)
Q Consensus 337 ~~~~~~~~l~~l~~~l~~ 354 (364)
.|.|+.++++.++.+++.
T Consensus 335 ~g~~~~l~l~~~~~~~~~ 352 (353)
T 1sxj_D 335 NGTNEHIQLLNLLVKISQ 352 (353)
T ss_dssp TCCCHHHHHHHHHHHHHH
T ss_pred hCCChHHHHHHHHHHHHh
Confidence 999999999999999975
No 6
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=100.00 E-value=2.6e-41 Score=308.41 Aligned_cols=313 Identities=36% Similarity=0.623 Sum_probs=280.7
Q ss_pred CCCChhhccCCCCCcchhccHHHHHHHHHHHhcCCCCcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCCCCh
Q 017884 39 KASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGI 118 (364)
Q Consensus 39 ~~~~~~~~~~p~~~~~~vg~~~~~~~l~~~~~~~~~~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~ 118 (364)
...||.++|+|.+|++++|++..+..+..++..+..+|++|+||+|+|||++++.+++.+.+..+...++++++.+..+.
T Consensus 7 ~~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~ 86 (323)
T 1sxj_B 7 LQLPWVEKYRPQVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRGI 86 (323)
T ss_dssp CCCCHHHHTCCSSGGGCCSCTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCCSH
T ss_pred ccCcHHHhcCCCCHHHHHCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCccccCh
Confidence 46799999999999999999999999999999998889999999999999999999999877666667888888876677
Q ss_pred HHHHHHHHHHHhcCccccCCccceEEEEEeCCCCCCHHHHHHHHHHHHHhccCccEEEEeeccccCchhhhccceEEEec
Q 017884 119 DVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFA 198 (364)
Q Consensus 119 ~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~l~~~l~sr~~~i~~~ 198 (364)
+.+++.+..+...... +.. +++++|+|||+|.++...++.|++++++++.++++|++++...++.+++.+||..+.|+
T Consensus 87 ~~i~~~~~~~~~~~~~-~~~-~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~~~i~~~ 164 (323)
T 1sxj_B 87 DVVRNQIKHFAQKKLH-LPP-GKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCAILRYS 164 (323)
T ss_dssp HHHHTHHHHHHHBCCC-CCT-TCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECC
T ss_pred HHHHHHHHHHHhcccc-CCC-CCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhceEEeec
Confidence 7777777766532221 211 14899999999999999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCchHHHHHhcCCCChHHHHHHHHHHH
Q 017884 199 PLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLL 278 (364)
Q Consensus 199 ~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~a~~~l~~~~~~~~~i~~~~v~~~~~~~~~~~~~~l~~~l~ 278 (364)
+++.+++.+++..++.++++.+++++++.+++.++||+|.+++.++......+.|+.++|.++++......+++++++
T Consensus 165 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~r~a~~~l~~~~~~~~~i~~~~v~~~~~~~~~~~i~~~~~~-- 242 (323)
T 1sxj_B 165 KLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEGDMRQAINNLQSTVAGHGLVNADNVFKIVDSPHPLIVKKMLLA-- 242 (323)
T ss_dssp CCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSBCHHHHHHHHTSCCHHHHHHHHSC--
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHCCCCHHHHHHHHhc--
Confidence 999999999999999999999999999999999999999999999988766678999999999999888889998887
Q ss_pred hccHHHHHHHHHH-HHHhcCCCHHHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Q 017884 279 NESFADSFKRISE-MKMRKGLALVDIVREVTMFVFKIK-MPSDVRVRLMNDLADIEYRLSFGCNDKLQLGSIISTFTQAR 356 (364)
Q Consensus 279 ~~~~~~~~~~l~~-l~~~~~~~~~~i~~~l~~~~~~~~-~~~~~~~~i~~~l~~~~~~l~~~~~~~~~l~~l~~~l~~~~ 356 (364)
++...++.++.. ++ ..|.++.+++..+.++++.+. ++...+..+++.+.+++++++.|.|+.++++.++.+++.+.
T Consensus 243 -~~~~~~l~~l~~dl~-~~g~~~~~i~~~l~~~~~~l~~~~~~~l~~~l~~l~~~~~~l~~~~~~~l~le~l~~~~~~~~ 320 (323)
T 1sxj_B 243 -SNLEDSIQILRTDLW-KKGYSSIDIVTTSFRVTKNLAQVKESVRLEMIKEIGLTHMRILEGVGTYLQLASMLAKIHKLN 320 (323)
T ss_dssp -SSHHHHHHHHHHTTT-TTTCCHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHT
T ss_pred -CCHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHhhc
Confidence 788888888887 77 789999999999999998765 88999999999999999999999999999999999998765
Q ss_pred H
Q 017884 357 S 357 (364)
Q Consensus 357 ~ 357 (364)
+
T Consensus 321 ~ 321 (323)
T 1sxj_B 321 N 321 (323)
T ss_dssp T
T ss_pred c
Confidence 4
No 7
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=100.00 E-value=5e-41 Score=310.59 Aligned_cols=312 Identities=25% Similarity=0.459 Sum_probs=254.9
Q ss_pred ChhhccCCCCCcchhccHHHHHHHHHHH-hcCCCCcEEEeCCCCccHHHHHHHHHHHHcCCCCC----------------
Q 017884 42 PWVEKYRPQSLADVAAHRDIVDTIDRLT-SENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYH---------------- 104 (364)
Q Consensus 42 ~~~~~~~p~~~~~~vg~~~~~~~l~~~~-~~~~~~~lll~G~~G~GKt~la~~l~~~l~~~~~~---------------- 104 (364)
||++||||.+|++++|++.++..+..++ ..+..+|++|+||+|+|||++++++++.+.+...+
T Consensus 3 ~w~~kyrP~~~~~~vg~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~ 82 (354)
T 1sxj_E 3 LWVDKYRPKSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRK 82 (354)
T ss_dssp -CTTTTCCCSGGGCCSCHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC---------------
T ss_pred cchhccCCCCHHHhcCCHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeeccccccc
Confidence 8999999999999999999999999999 88888889999999999999999999987664421
Q ss_pred --------CcEEEEeCCCCCChH--HHHHHHHHHHhcCcccc----CC-ccceEEEEEeCCCCCCHHHHHHHHHHHHHhc
Q 017884 105 --------NMILELNASDDRGID--VVRQQIQDFASTQSFSF----GV-KASVKLVLLDEADAMTKDAQFALRRVIEKYT 169 (364)
Q Consensus 105 --------~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~----~~-~~~~~viiiDe~~~l~~~~~~~L~~~le~~~ 169 (364)
..+++++........ .+++.+..+....+... +. ..++++++|||++.+....++.|++++++++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~~~~~~~L~~~le~~~ 162 (354)
T 1sxj_E 83 LELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTMEKYS 162 (354)
T ss_dssp ---CCEECSSEEEECCC----CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSCHHHHHHHHHHHHHST
T ss_pred ceeeeecccceEEecHhhcCCcchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccccCHHHHHHHHHHHHhhc
Confidence 124455543321111 35566666554433210 01 2258899999999999999999999999998
Q ss_pred cCccEEEEeeccccCchhhhccceEEEecCCChHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 017884 170 KNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVT-EGGLAALVRLCNGDMRKALNILQSTHM 248 (364)
Q Consensus 170 ~~~~~Il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~-~~~~~~l~~~~~g~~r~a~~~l~~~~~ 248 (364)
.++.+|++|+.+.++.+++++||..++|++++.+++.+++..++.++|+.++ +++++.+++.++||+|.+++.++.+..
T Consensus 163 ~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~i~~~~~G~~r~a~~~l~~~~~ 242 (354)
T 1sxj_E 163 KNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQASNGNLRVSLLMLESMAL 242 (354)
T ss_dssp TTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCEECCSHHHHHHHHHHTTCHHHHHHHHTHHHH
T ss_pred CCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999999999999 999999999999999999999999887
Q ss_pred hcc-cCchHHHHHhcCCCChHHHHHHHHHHHhcc----HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc-CCChHHHH
Q 017884 249 ASQ-QITEEAVYLCTGNPLPKDIEQISYWLLNES----FADSFKRISEMKMRKGLALVDIVREVTMFVFKI-KMPSDVRV 322 (364)
Q Consensus 249 ~~~-~i~~~~v~~~~~~~~~~~~~~l~~~l~~~~----~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~~~~-~~~~~~~~ 322 (364)
+.. .||.+.+ +........++++++++..++ +..+...+.+++ ..|+++.+++..+++++... .++...+.
T Consensus 243 ~~~~~i~~~~~--~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~l~~l~-~~g~~~~~i~~~l~~~~~~~~~~~~~~l~ 319 (354)
T 1sxj_E 243 NNELALKSSSP--IIKPDWIIVIHKLTRKIVKERSVNSLIECRAVLYDLL-AHCIPANIILKELTFSLLDVETLNTTNKS 319 (354)
T ss_dssp TTTTEECSSCC--CCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHH-TTTCCHHHHHHHHHHTTTTCTTSCHHHHH
T ss_pred hCCCCcCcCcC--CCCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHhccCCCHHHHH
Confidence 665 5776553 222222357899999998754 444555666666 78999999999998888754 38899999
Q ss_pred HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Q 017884 323 RLMNDLADIEYRLSFGCNDKLQLGSIISTFTQAR 356 (364)
Q Consensus 323 ~i~~~l~~~~~~l~~~~~~~~~l~~l~~~l~~~~ 356 (364)
++++.++++|++++.|.++.++|+.+++++|.++
T Consensus 320 ~~~~~l~~~d~~l~~g~~~~~~le~~~~~~~~~~ 353 (354)
T 1sxj_E 320 SIIEYSSVFDERLSLGNKAIFHLEGFIAKVMCCL 353 (354)
T ss_dssp HHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999998764
No 8
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=100.00 E-value=2.4e-37 Score=287.88 Aligned_cols=310 Identities=19% Similarity=0.299 Sum_probs=270.0
Q ss_pred CCChhhccCCCCCcchhccHHHHHHHHHHHhcCCCCc-EEEeCCCCccHHHHHHHHHHHHcCCCC---------------
Q 017884 40 ASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPH-LLLYGPPGTGKTSTILAVARKLYGAQY--------------- 103 (364)
Q Consensus 40 ~~~~~~~~~p~~~~~~vg~~~~~~~l~~~~~~~~~~~-lll~G~~G~GKt~la~~l~~~l~~~~~--------------- 103 (364)
..||.++|+|.+|++++|++.+++.|..++..+..+| ++|+||+|+|||++++++++.+.|...
T Consensus 3 ~~~l~~k~rp~~~~~~vg~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~ 82 (373)
T 1jr3_A 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREI 82 (373)
T ss_dssp CCCHHHHTCCCSTTTSCSCHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHHHHH
T ss_pred cHHHHHhhCCCchhhccCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHH
Confidence 4689999999999999999999999999999998888 799999999999999999999976432
Q ss_pred ----CCcEEEEeCCCCCChHHHHHHHHHHHhcCccccCCccceEEEEEeCCCCCCHHHHHHHHHHHHHhccCccEEEEee
Q 017884 104 ----HNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICN 179 (364)
Q Consensus 104 ----~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~ 179 (364)
...++.++.....+.+.+++.+.... ..+. .+ ++++|+|||+|.++...++.|++++++++.++.+|++++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~-~~---~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~ 157 (373)
T 1jr3_A 83 EQGRFVDLIEIDAASRTKVEDTRDLLDNVQ-YAPA-RG---RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATT 157 (373)
T ss_dssp HTSCCSSCEEEETTCSCCSSCHHHHHHHTT-SCCS-SS---SSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEES
T ss_pred hccCCCceEEecccccCCHHHHHHHHHHHh-hccc-cC---CeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeC
Confidence 12456666654445556666555433 2222 22 588999999999999999999999999999999999999
Q ss_pred ccccCchhhhccceEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhc-ccCchHHH
Q 017884 180 QVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMAS-QQITEEAV 258 (364)
Q Consensus 180 ~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~a~~~l~~~~~~~-~~i~~~~v 258 (364)
...++.+++.+||..+.|++++.+++..++..++.+.|+.+++++++.+++.++||+|.+.++++++..+. +.|+.++|
T Consensus 158 ~~~~l~~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~~~~~~a~~~l~~~~~G~~r~~~~~l~~~~~~~~~~i~~~~v 237 (373)
T 1jr3_A 158 DPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAV 237 (373)
T ss_dssp CGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHSSSCHHHHHHHHHHHHHHTTTCBCHHHH
T ss_pred ChHhCcHHHHhheeEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHhcCCcccHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998876544 58999999
Q ss_pred HHhcCCCChHHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc------------------------
Q 017884 259 YLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKI------------------------ 314 (364)
Q Consensus 259 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~~~~------------------------ 314 (364)
.++++......++++++++..++...++..+..+. ..|.++..++..+.++++.+
T Consensus 238 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~-~~g~~~~~~l~~l~~~~r~l~~~~~~~~~~~~~~~~~~~~~~~~ 316 (373)
T 1jr3_A 238 SAMLGTLDDDQALSLVEAMVEANGERVMALINEAA-ARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMREL 316 (373)
T ss_dssp HHHTTCCCHHHHHHHHHHHHHTCHHHHHHHHHHHH-HTTCCHHHHHHHHHHHHHHHHHHTTCTTCCCSGGGGTHHHHHHH
T ss_pred HHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHhhcCccccccchhHHHHHHHH
Confidence 99999998899999999999999999999999988 88999999888888777654
Q ss_pred --CCChHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHH
Q 017884 315 --KMPSDVRVRLMNDLADIEYRLSFGCNDKLQLGSIISTFTQA 355 (364)
Q Consensus 315 --~~~~~~~~~i~~~l~~~~~~l~~~~~~~~~l~~l~~~l~~~ 355 (364)
.++...+..+++.+.+++..++.+.++.+.++.++.+++..
T Consensus 317 a~~~~~~~l~~~~~~l~~~~~~lk~~~~~~l~le~~ll~~~~~ 359 (373)
T 1jr3_A 317 ARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAF 359 (373)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHHTTTSSSHHHHHHHHHHHHHHT
T ss_pred HHhCCHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhc
Confidence 34666778999999999999998889999999999999864
No 9
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=100.00 E-value=7.3e-35 Score=261.64 Aligned_cols=282 Identities=16% Similarity=0.188 Sum_probs=230.1
Q ss_pred ccHHHHHHHHHHHhcCCCCcEEEeCCCCccHHHHHHHHHHHHc-CCCCCCcEEEEeCCC-CCChHHHHHHHHHHHhcCcc
Q 017884 57 AHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLY-GAQYHNMILELNASD-DRGIDVVRQQIQDFASTQSF 134 (364)
Q Consensus 57 g~~~~~~~l~~~~~~~~~~~lll~G~~G~GKt~la~~l~~~l~-~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~ 134 (364)
||+++++.|.+.++.++.|+++||||||+|||++++++++... |...+.++.++++.. ..+++.+++.+..+ ...|+
T Consensus 1 g~~~~~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~id~ir~li~~~-~~~p~ 79 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSEGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDDIRTIKDFL-NYSPE 79 (305)
T ss_dssp ---CHHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHHHHHHHHHH-TSCCS
T ss_pred ChHHHHHHHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCCHHHHHHHHHHH-hhccc
Confidence 6889999999999999866699999999999999999998642 333456788888764 57888888866554 44443
Q ss_pred ccCCccceEEEEEeCCCCCCHHHHHHHHHHHHHhccCccEEEEeeccccCchhhhccceEEEecCCChHHHHHHHHHHHH
Q 017884 135 SFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIE 214 (364)
Q Consensus 135 ~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~ 214 (364)
++ +++|+||||+|.|+..++++|+++||+||++++||++|+++.++.++++|| +++|++++.+++.+|+...+
T Consensus 80 -~~---~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR--~~~f~~l~~~~i~~~L~~~~- 152 (305)
T 2gno_A 80 -LY---TRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR--VFRVVVNVPKEFRDLVKEKI- 152 (305)
T ss_dssp -SS---SSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT--SEEEECCCCHHHHHHHHHHH-
T ss_pred -cC---CceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce--eEeCCCCCHHHHHHHHHHHh-
Confidence 33 489999999999999999999999999999999999999999999999999 99999999999999999887
Q ss_pred HcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHh-------cc-cCchHHHHHhcCCCChH--HHHHHHHHHHhccHHH
Q 017884 215 AEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMA-------SQ-QITEEAVYLCTGNPLPK--DIEQISYWLLNESFAD 284 (364)
Q Consensus 215 ~~~~~i~~~~~~~l~~~~~g~~r~a~~~l~~~~~~-------~~-~i~~~~v~~~~~~~~~~--~~~~l~~~l~~~~~~~ 284 (364)
.++++++ ..++||+|.+++.++..... .. .-+.++|..+++.+... +++++++++.+++...
T Consensus 153 ----~i~~~~~----~~~~g~~~~al~~l~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~v~~l~~ai~~~~~~~ 224 (305)
T 2gno_A 153 ----GDLWEEL----PLLERDFKTALEAYKLGAEKLSGLMESLKVLETEKLLKKVLSKGLEGYLACRELLERFSKVESKE 224 (305)
T ss_dssp ----TTHHHHC----GGGGTCHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHTTTTTCSHHHHHHHHHHHHHHHHHSCGGG
T ss_pred ----CCCHHHH----HHHCCCHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHccCCcchHHHHHHHHHHHCCCHHH
Confidence 3666665 45789999999888632211 01 12467888888877744 8999999999999999
Q ss_pred HHHHHHHHHHh-cCCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhc---CCChHHHHHHHHHHHHHHH
Q 017884 285 SFKRISEMKMR-KGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSF---GCNDKLQLGSIISTFTQAR 356 (364)
Q Consensus 285 ~~~~l~~l~~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~i~~~l~~~~~~l~~---~~~~~~~l~~l~~~l~~~~ 356 (364)
++..+++++.. .|+++.+++..+++.+...+ .....+.++.++.+++++.. |.++.++|+.+++.+|+..
T Consensus 225 a~~~~~~l~~~~~g~~~~~~i~~~~r~l~~~~--~~~~~~~l~~~~~~~~~~~~k~~g~~~~lql~~l~~~~~~~~ 298 (305)
T 2gno_A 225 FFALFDQVTNTITGKDAFLLIQRLTRIILHEN--TWESVEDQKSVSFLDSILRVKIANLNNKLTLMNILAIHRERK 298 (305)
T ss_dssp HHHHHHHHHHHSCTHHHHHHHHHHHHHHHHTS--CCCSHHHHHHHHHHHHHHTCCGGGCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhc--hhhhHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhc
Confidence 99999999943 89999999999999887543 22235566688999999988 8899999999999999544
No 10
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=100.00 E-value=9e-32 Score=253.80 Aligned_cols=298 Identities=19% Similarity=0.276 Sum_probs=233.2
Q ss_pred CCChhhccCCCCCcchhccHHHH---HHHHHHHhcCCCCcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCCC
Q 017884 40 ASPWVEKYRPQSLADVAAHRDIV---DTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDR 116 (364)
Q Consensus 40 ~~~~~~~~~p~~~~~~vg~~~~~---~~l~~~~~~~~~~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~ 116 (364)
..||.++|||.+|++++|+++++ ..|...+..+..++++|+||||+|||++|+.+++.+ ...+..+++.. .
T Consensus 13 ~~pla~r~rP~~l~~ivGq~~~~~~~~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~-----~~~f~~l~a~~-~ 86 (447)
T 3pvs_A 13 FQPLAARMRPENLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYA-----NADVERISAVT-S 86 (447)
T ss_dssp -CCHHHHTCCCSTTTCCSCHHHHSTTSHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHT-----TCEEEEEETTT-C
T ss_pred cCChHHHhCCCCHHHhCCcHHHHhchHHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHh-----CCCeEEEEecc-C
Confidence 37999999999999999999999 799999999998889999999999999999999997 45677777655 4
Q ss_pred ChHHHHHHHHHHHhcCccccCCccceEEEEEeCCCCCCHHHHHHHHHHHHHhccCccEEEEe--eccccCchhhhccceE
Q 017884 117 GIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALIC--NQVNKIIPALQSRCTR 194 (364)
Q Consensus 117 ~~~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~--~~~~~l~~~l~sr~~~ 194 (364)
+...++..+........ .+ .+++|+|||+|.++...++.|++++++ ..+.+|+++ +....+.+++.+||.+
T Consensus 87 ~~~~ir~~~~~a~~~~~--~~---~~~iLfIDEI~~l~~~~q~~LL~~le~--~~v~lI~att~n~~~~l~~aL~sR~~v 159 (447)
T 3pvs_A 87 GVKEIREAIERARQNRN--AG---RRTILFVDEVHRFNKSQQDAFLPHIED--GTITFIGATTENPSFELNSALLSRARV 159 (447)
T ss_dssp CHHHHHHHHHHHHHHHH--TT---CCEEEEEETTTCC------CCHHHHHT--TSCEEEEEESSCGGGSSCHHHHTTEEE
T ss_pred CHHHHHHHHHHHHHhhh--cC---CCcEEEEeChhhhCHHHHHHHHHHHhc--CceEEEecCCCCcccccCHHHhCceeE
Confidence 56666666655433211 12 478999999999999999999999997 356677776 4445789999999999
Q ss_pred EEecCCChHHHHHHHHHHHHH-------cCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcc-------cCchHHHHH
Q 017884 195 FRFAPLEPVHVTERLKHVIEA-------EGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQ-------QITEEAVYL 260 (364)
Q Consensus 195 i~~~~~~~~~~~~~l~~~~~~-------~~~~i~~~~~~~l~~~~~g~~r~a~~~l~~~~~~~~-------~i~~~~v~~ 260 (364)
+.|++++.+++..++...+.. .++.+++++++.|+++++||+|.+++.++.+...+. .||.++|.+
T Consensus 160 ~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~Le~a~~~a~~~~~~~~~It~e~v~~ 239 (447)
T 3pvs_A 160 YLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTLEMMADMAEVDDSGKRVLKPELLTE 239 (447)
T ss_dssp EECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHHHHHHHHHSCBCTTSCEECCHHHHHH
T ss_pred EeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccccCCCCccCHHHHHH
Confidence 999999999999999999987 567799999999999999999999999998887553 699999999
Q ss_pred hcCCCC----------hHHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-cCCChHHHHHHHHHHH
Q 017884 261 CTGNPL----------PKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFK-IKMPSDVRVRLMNDLA 329 (364)
Q Consensus 261 ~~~~~~----------~~~~~~l~~~l~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~~~-~~~~~~~~~~i~~~l~ 329 (364)
++.... .+.+..+.+++.+.+...++.++.+++ ..|++|..|.+.+.+.... .++-+..-..+.....
T Consensus 240 ~l~~~~~~~dk~gd~~yd~isal~ksirgsd~daAl~~la~ml-~~Gedp~~i~rrl~~~a~edig~a~p~a~~~~~~~~ 318 (447)
T 3pvs_A 240 IAGERSARFDNKGDRFYDLISALHKSVRGSAPDAALYWYARII-TAGGDPLYVARRCLAIASEDVGNADPRAMQVAIAAW 318 (447)
T ss_dssp HHTCCCCC---CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HTTCCHHHHHHHHHHHHHHTTGGGCTHHHHHHHHHH
T ss_pred HHhhhhhccCCccchHHHHHHHHHHHHhCCCHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHhcccCCChhHHHHHHHHH
Confidence 987653 356777888889999999999999999 8999999999998887764 3333333333333333
Q ss_pred HHHHHHhcCC-ChHHHHHHHHHHHH
Q 017884 330 DIEYRLSFGC-NDKLQLGSIISTFT 353 (364)
Q Consensus 330 ~~~~~l~~~~-~~~~~l~~l~~~l~ 353 (364)
+.-.+ .|. .-++.|...+..+|
T Consensus 319 ~~~~~--~g~pe~~~~l~~~~~~la 341 (447)
T 3pvs_A 319 DCFTR--VGPAEGERAIAQAIVYLA 341 (447)
T ss_dssp HHHHH--SCHHHHHHHHHHHHHHHH
T ss_pred HHHHH--hCCcHHHHHHHHHHHHHH
Confidence 33322 343 33666776666665
No 11
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=100.00 E-value=4.8e-31 Score=241.23 Aligned_cols=285 Identities=21% Similarity=0.291 Sum_probs=218.6
Q ss_pred hccHHHHHHHHHHHhcCCCCc-EEEeCCCCccHHHHHHHHHHHHcCCCC-------------------CCcEEEEeCC--
Q 017884 56 AAHRDIVDTIDRLTSENRLPH-LLLYGPPGTGKTSTILAVARKLYGAQY-------------------HNMILELNAS-- 113 (364)
Q Consensus 56 vg~~~~~~~l~~~~~~~~~~~-lll~G~~G~GKt~la~~l~~~l~~~~~-------------------~~~~~~~~~~-- 113 (364)
..+++..+.|...+.+++.+| ++|+||+|+|||++|+++++.+.|... +.++..+++.
T Consensus 5 pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~ 84 (334)
T 1a5t_A 5 PWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKG 84 (334)
T ss_dssp GGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTT
T ss_pred CchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEecccc
Confidence 345678889999999999999 899999999999999999999988642 2456777764
Q ss_pred -CCCChHHHHHHHHHHHhcCccccCCccceEEEEEeCCCCCCHHHHHHHHHHHHHhccCccEEEEeeccccCchhhhccc
Q 017884 114 -DDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRC 192 (364)
Q Consensus 114 -~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~l~~~l~sr~ 192 (364)
...+.+.+++.+..+. ..++ .+ +++|+||||+|.|+...+++|++++|+|+.++.+|++|+.++++.++++|||
T Consensus 85 ~~~~~i~~ir~l~~~~~-~~~~-~~---~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~~l~~ti~SRc 159 (334)
T 1a5t_A 85 KNTLGVDAVREVTEKLN-EHAR-LG---GAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSRC 159 (334)
T ss_dssp CSSBCHHHHHHHHHHTT-SCCT-TS---SCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHHHTTS
T ss_pred CCCCCHHHHHHHHHHHh-hccc-cC---CcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHhhcc
Confidence 4467778887655543 3332 22 5899999999999999999999999999999999999999999999999999
Q ss_pred eEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCchHHHHHhcCCCChHHHHH
Q 017884 193 TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQ 272 (364)
Q Consensus 193 ~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~a~~~l~~~~~~~~~i~~~~v~~~~~~~~~~~~~~ 272 (364)
+.+.|++++.+++.+|+..++ .+++++++.+++.++|++|.+++.++........++.+.+..+... .+++.
T Consensus 160 ~~~~~~~~~~~~~~~~L~~~~-----~~~~~~~~~l~~~s~G~~r~a~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~ 231 (334)
T 1a5t_A 160 RLHYLAPPPEQYAVTWLSREV-----TMSQDALLAALRLSAGSPGAALALFQGDNWQARETLCQALAYSVPS---GDWYS 231 (334)
T ss_dssp EEEECCCCCHHHHHHHHHHHC-----CCCHHHHHHHHHHTTTCHHHHHHTTSSHHHHHHHHHHHHHHHHHHH---CCCGG
T ss_pred eeeeCCCCCHHHHHHHHHHhc-----CCCHHHHHHHHHHcCCCHHHHHHHhccchHHHHHHHHHHHHHHHhC---hHHHH
Confidence 999999999999999998764 6799999999999999999999999765543344555555555431 22334
Q ss_pred HHHHHHhccHHHHHHHHHHHHH---hc-----CCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHh--cCCChH
Q 017884 273 ISYWLLNESFADSFKRISEMKM---RK-----GLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLS--FGCNDK 342 (364)
Q Consensus 273 l~~~l~~~~~~~~~~~l~~l~~---~~-----~~~~~~i~~~l~~~~~~~~~~~~~~~~i~~~l~~~~~~l~--~~~~~~ 342 (364)
+.+.+.+.+....+.++..++. .. +....+....+..... .++...+..+++.+.+++.+++ .+.|+.
T Consensus 232 ~~~~l~~~~~~~~l~~l~~~~rdll~~~~~~~~~~~~~~~~~~~~~a~--~~~~~~l~~~~~~l~~~~~~l~~~~~~n~~ 309 (334)
T 1a5t_A 232 LLAALNHEQAPARLHWLATLLMDALKRHHGAAQVTNVDVPGLVAELAN--HLSPSRLQAILGDVCHIREQLMSVTGINRE 309 (334)
T ss_dssp GHHHHCSTTHHHHHHHHHHHHHHHTCC------CCCTTCHHHHHHHHH--HSCHHHHHHHHHHHHHHHHHHHHHCCSSHH
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHHHhccCCccccCHHHHHHHHHHHH--hCCHHHHHHHHHHHHHHHHHHHhcCCCCHH
Confidence 5555655666665554443321 11 1111122333333333 3688899999999999999999 888999
Q ss_pred HHHHHHHHHHHHH
Q 017884 343 LQLGSIISTFTQA 355 (364)
Q Consensus 343 ~~l~~l~~~l~~~ 355 (364)
++++.++.+++..
T Consensus 310 l~le~ll~~l~~~ 322 (334)
T 1a5t_A 310 LLITDLLLRIEHY 322 (334)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999754
No 12
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=100.00 E-value=9e-31 Score=225.46 Aligned_cols=222 Identities=45% Similarity=0.804 Sum_probs=196.7
Q ss_pred CCCChhhccCCCCCcchhccHHHHHHHHHHHhcCCCCcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCCCCh
Q 017884 39 KASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGI 118 (364)
Q Consensus 39 ~~~~~~~~~~p~~~~~~vg~~~~~~~l~~~~~~~~~~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~ 118 (364)
+-.||.++|+|.+|++++|++..+..+..++..+..++++|+||+|+|||++++.+++.+.+.+....++.+++....+.
T Consensus 3 ~~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 82 (226)
T 2chg_A 3 NFEIWVEKYRPRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGI 82 (226)
T ss_dssp -CCCHHHHTSCSSGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTTCH
T ss_pred chhhHHHhcCCCCHHHHcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccccCh
Confidence 45799999999999999999999999999999988778999999999999999999999876666677888888877777
Q ss_pred HHHHHHHHHHHhcCccccCCccceEEEEEeCCCCCCHHHHHHHHHHHHHhccCccEEEEeeccccCchhhhccceEEEec
Q 017884 119 DVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFA 198 (364)
Q Consensus 119 ~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~l~~~l~sr~~~i~~~ 198 (364)
+.+...+..+....... ..++.+|+|||++.+....++.|+.+++.++.++.+|++++....+.+.+.+|+..+.|+
T Consensus 83 ~~~~~~~~~~~~~~~~~---~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~~i~~~ 159 (226)
T 2chg_A 83 DVVRHKIKEFARTAPIG---GAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFK 159 (226)
T ss_dssp HHHHHHHHHHHTSCCST---TCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECC
T ss_pred HHHHHHHHHHhcccCCC---ccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCceeecC
Confidence 77777666665443221 125889999999999999999999999998888999999998889999999999999999
Q ss_pred CCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCchHHHHHhcC
Q 017884 199 PLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTG 263 (364)
Q Consensus 199 ~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~a~~~l~~~~~~~~~i~~~~v~~~~~ 263 (364)
+++.+++..++...+...+..+++++++.+++.++||+|.+++.++.++...+.|+.++|.++++
T Consensus 160 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~l~~~l~~~~~~~~~I~~~~v~~~~~ 224 (226)
T 2chg_A 160 PVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGGDFRKAINALQGAAAIGEVVDADTIYQITA 224 (226)
T ss_dssp CCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSCBCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCceecHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999988778899999988764
No 13
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=99.98 E-value=1.6e-31 Score=245.68 Aligned_cols=278 Identities=12% Similarity=0.089 Sum_probs=232.8
Q ss_pred HHHHHhcCCCCc-EEEeCCCCccHHHHHHHHHHHHcCCCCCC-cEEEEeCCCCCChHHHHHHHHHHHhcCccccCCccce
Q 017884 65 IDRLTSENRLPH-LLLYGPPGTGKTSTILAVARKLYGAQYHN-MILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASV 142 (364)
Q Consensus 65 l~~~~~~~~~~~-lll~G~~G~GKt~la~~l~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 142 (364)
+.+.++ ++.+| ++||||+|+||++.+..+++.+.+.+... .++.+++ . ..+++.+. .+.+.|+ |+ ++
T Consensus 9 l~~~l~-~~~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~---~~~~~l~~-~~~~~pl-f~---~~ 77 (343)
T 1jr3_D 9 LRAQLN-EGLRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSIDP--N---TDWNAIFS-LCQAMSL-FA---SR 77 (343)
T ss_dssp HHHHHH-HCCCSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECCT--T---CCHHHHHH-HHHHHHH-CC---SC
T ss_pred HHHHHh-cCCCcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEecC--C---CCHHHHHH-HhcCcCC-cc---CC
Confidence 344455 34455 89999999999999999999987654322 3444442 1 23344333 3444454 55 48
Q ss_pred EEEEEeCCCC-CCHHHHHHHHHHHHHhccCccEEEEeecc------ccCchhhhccceEEEecCCChHHHHHHHHHHHHH
Q 017884 143 KLVLLDEADA-MTKDAQFALRRVIEKYTKNTRFALICNQV------NKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEA 215 (364)
Q Consensus 143 ~viiiDe~~~-l~~~~~~~L~~~le~~~~~~~~Il~~~~~------~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~ 215 (364)
+||+|||++. ++.+.+++|++++++|++++++|++++.. .++.+++.+||.++.|.+++.+++..|+..++++
T Consensus 78 kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l~~~~~~ 157 (343)
T 1jr3_D 78 QTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAARAKQ 157 (343)
T ss_dssp EEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHHHHHHHH
Confidence 9999999999 99999999999999999999999998653 4688999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhc--ccCchHHHHHhcCCCChHHHHHHHHHHHhccHHHHHHHHHHHH
Q 017884 216 EGLDVTEGGLAALVRLCNGDMRKALNILQSTHMAS--QQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMK 293 (364)
Q Consensus 216 ~~~~i~~~~~~~l~~~~~g~~r~a~~~l~~~~~~~--~~i~~~~v~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~l~~l~ 293 (364)
+|+.+++++++.|++.++||++.+.++++++..+. +.||.++|..+++.....+++++++++..++...++..+..+.
T Consensus 158 ~g~~i~~~a~~~l~~~~~gdl~~~~~elekl~l~~~~~~It~e~V~~~~~~~~~~~if~l~~ai~~~d~~~al~~l~~l~ 237 (343)
T 1jr3_D 158 LNLELDDAANQVLCYCYEGNLLALAQALERLSLLWPDGKLTLPRVEQAVNDAAHFTPFHWVDALLMGKSKRALHILQQLR 237 (343)
T ss_dssp TTCEECHHHHHHHHHSSTTCHHHHHHHHHHHHHHCTTCEECHHHHHHHHHHHCCCCHHHHHHHHTTSCHHHHHHHHTSST
T ss_pred cCCCCCHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHhhhhcCCHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999998863 5799999999988888889999999999999999999999987
Q ss_pred HhcCCCHHHHHHHHHHHHHhc----------------------------------CCChHHHHHHHHHHHHHHHHHhcCC
Q 017884 294 MRKGLALVDIVREVTMFVFKI----------------------------------KMPSDVRVRLMNDLADIEYRLSFGC 339 (364)
Q Consensus 294 ~~~~~~~~~i~~~l~~~~~~~----------------------------------~~~~~~~~~i~~~l~~~~~~l~~~~ 339 (364)
..|.++..++..+.++++.+ .++...+..++..+.++|.++|.+.
T Consensus 238 -~~g~~~~~il~~l~~~~r~l~~~~~~~~~g~~~~i~~~l~i~~~~~~~~~~~~~~~s~~~L~~~l~~l~~~d~~lK~~~ 316 (343)
T 1jr3_D 238 -LEGSEPVILLRTLQRELLLLVNLKRQSAHTPLRALFDKHRVWQNRRGMMGEALNRLSQTQLRQAVQLLTRTELTLKQDY 316 (343)
T ss_dssp -TTTCCHHHHHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHTCCSSHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHSS
T ss_pred -HCCCcHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHcCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 88999999999888887753 2345567889999999999999974
Q ss_pred --ChHHHHHHHHHHHHH
Q 017884 340 --NDKLQLGSIISTFTQ 354 (364)
Q Consensus 340 --~~~~~l~~l~~~l~~ 354 (364)
++.+.|+.++.++|.
T Consensus 317 ~~~~~~~le~l~l~l~~ 333 (343)
T 1jr3_D 317 GQSVWAELEGLSLLLCH 333 (343)
T ss_dssp CSCHHHHHHHHHHHTTS
T ss_pred CCCHHHHHHHHHHHHcC
Confidence 678999999998874
No 14
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.96 E-value=2.6e-27 Score=206.46 Aligned_cols=220 Identities=23% Similarity=0.392 Sum_probs=179.7
Q ss_pred CCCChhhccCCCCCcchhccHHHHHHHHHHHhcCCCCc-EEEeCCCCccHHHHHHHHHHHHcCCCC--------------
Q 017884 39 KASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPH-LLLYGPPGTGKTSTILAVARKLYGAQY-------------- 103 (364)
Q Consensus 39 ~~~~~~~~~~p~~~~~~vg~~~~~~~l~~~~~~~~~~~-lll~G~~G~GKt~la~~l~~~l~~~~~-------------- 103 (364)
...||.++|+|..|++++|++..+..+..++..+..++ ++|+||+|+|||++++.+++.+.+...
T Consensus 9 ~~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (250)
T 1njg_A 9 SYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCRE 88 (250)
T ss_dssp --CCHHHHTCCCSGGGCCSCHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHH
T ss_pred HHHHHhhccCCccHHHHhCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHH
Confidence 35789999999999999999999999999999887766 799999999999999999998865321
Q ss_pred -----CCcEEEEeCCCCCChHHHHHHHHHHHhcCccccCCccceEEEEEeCCCCCCHHHHHHHHHHHHHhccCccEEEEe
Q 017884 104 -----HNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALIC 178 (364)
Q Consensus 104 -----~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~ 178 (364)
...++.++.......+.+...+.... . .....++.+|+|||+|.+....++.|++++++++..+.+|+++
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t 163 (250)
T 1njg_A 89 IEQGRFVDLIEIDAASRTKVEDTRDLLDNVQ-Y----APARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLAT 163 (250)
T ss_dssp HHTTCCSSEEEEETTCGGGHHHHHHHHHSCC-C----SCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEE
T ss_pred HhccCCcceEEecCcccccHHHHHHHHHHhh-h----chhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEe
Confidence 11334444443223333333322211 1 1112247899999999999999999999999988889999999
Q ss_pred eccccCchhhhccceEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhc-ccCchHH
Q 017884 179 NQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMAS-QQITEEA 257 (364)
Q Consensus 179 ~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~a~~~l~~~~~~~-~~i~~~~ 257 (364)
+....+.+.+.+|+..+.|++++.+++.+++..++.+.+..+++++++.+++.++|++|.+.+.++.+.... +.||.++
T Consensus 164 ~~~~~~~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~~~~~~~~~~~~~~~~~~i~~~~ 243 (250)
T 1njg_A 164 TDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQA 243 (250)
T ss_dssp SCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHTTCHHHHHHHHHHHHTTTTSSBCHHH
T ss_pred CChHhCCHHHHHHhhhccCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhccCceecHHH
Confidence 988889999999999999999999999999999999999999999999999999999999999998877654 4799999
Q ss_pred HHHhcC
Q 017884 258 VYLCTG 263 (364)
Q Consensus 258 v~~~~~ 263 (364)
|.++++
T Consensus 244 v~~~~~ 249 (250)
T 1njg_A 244 VSAMLG 249 (250)
T ss_dssp HHHHSC
T ss_pred HHHHhC
Confidence 988765
No 15
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.96 E-value=1.9e-27 Score=229.52 Aligned_cols=241 Identities=24% Similarity=0.386 Sum_probs=186.3
Q ss_pred CCCCCCCCChhhccCCCCCcchhccHHHHHHHHHHHhcC-----------------CCCcEEEeCCCCccHHHHHHHHHH
Q 017884 34 TPPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSEN-----------------RLPHLLLYGPPGTGKTSTILAVAR 96 (364)
Q Consensus 34 ~~~~~~~~~~~~~~~p~~~~~~vg~~~~~~~l~~~~~~~-----------------~~~~lll~G~~G~GKt~la~~l~~ 96 (364)
.+......+|+++|+|.+|++++|++..++.|..++... ..++++|+||||+|||++|+++++
T Consensus 20 ~~~~~~~~lW~ekyrP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~ 99 (516)
T 1sxj_A 20 GPHMASDKLWTVKYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQ 99 (516)
T ss_dssp ------CCCHHHHTCCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCccCCCcccccCCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 445566789999999999999999999999999998751 234599999999999999999999
Q ss_pred HHcCCCCCCcEEEEeCCCCCChHHHHHHHHHHHhcCcc--ccC-------CccceEEEEEeCCCCCCHHHH---HHHHHH
Q 017884 97 KLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSF--SFG-------VKASVKLVLLDEADAMTKDAQ---FALRRV 164 (364)
Q Consensus 97 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~-------~~~~~~viiiDe~~~l~~~~~---~~L~~~ 164 (364)
++ ...+++++++.......+...+......... .+. ....+.+|+|||+|.+....+ +.|+.+
T Consensus 100 ~l-----~~~~i~in~s~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~ 174 (516)
T 1sxj_A 100 EL-----GYDILEQNASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQF 174 (516)
T ss_dssp HT-----TCEEEEECTTSCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHH
T ss_pred Hc-----CCCEEEEeCCCcchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHH
Confidence 97 5678899988776655444433332211110 011 113578999999999976443 778888
Q ss_pred HHHhccCccEEEEeeccc-cCchhhhccceEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHH
Q 017884 165 IEKYTKNTRFALICNQVN-KIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNIL 243 (364)
Q Consensus 165 le~~~~~~~~Il~~~~~~-~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~a~~~l 243 (364)
++.. ...+|++++... ...+++.+||..+.|++|+.+++.+++..++.++++.+++++++.|++.++||+|.+++.+
T Consensus 175 l~~~--~~~iIli~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~~~l~~la~~s~GdiR~~i~~L 252 (516)
T 1sxj_A 175 CRKT--STPLILICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLDPNVIDRLIQTTRGDIRQVINLL 252 (516)
T ss_dssp HHHC--SSCEEEEESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHTTTCHHHHHHHH
T ss_pred HHhc--CCCEEEEEcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHH
Confidence 8863 456777776543 4456788999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcccCchHHHHHhcC---CCChHHHHHHHHHHHhcc
Q 017884 244 QSTHMASQQITEEAVYLCTG---NPLPKDIEQISYWLLNES 281 (364)
Q Consensus 244 ~~~~~~~~~i~~~~v~~~~~---~~~~~~~~~l~~~l~~~~ 281 (364)
+.++.....|+.+++..++. ......+|++++.++...
T Consensus 253 ~~~~~~~~~It~~~v~~~~~~~~~~~~~~~f~~~~~il~~~ 293 (516)
T 1sxj_A 253 STISTTTKTINHENINEISKAWEKNIALKPFDIAHKMLDGQ 293 (516)
T ss_dssp THHHHHSSCCCTTHHHHHHHHHHTTTTSHHHHHHHHHTBGG
T ss_pred HHHHhcCCCCchHHHHHHHHhhccCCCCCHHHHHHHHhcCC
Confidence 98887778899998877664 344457788888877643
No 16
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.93 E-value=1.1e-24 Score=199.84 Aligned_cols=209 Identities=15% Similarity=0.202 Sum_probs=165.0
Q ss_pred CCCCChhhccCCCCCcchhccHHHHHHHHHHHhc-----CCCCcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeC
Q 017884 38 IKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSE-----NRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNA 112 (364)
Q Consensus 38 ~~~~~~~~~~~p~~~~~~vg~~~~~~~l~~~~~~-----~~~~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~ 112 (364)
.....|.++|+|.+|++++|++..+..+..++.. ...++++|+||+|+|||++|+++++.+ ...++.+++
T Consensus 14 ~~~~~~~~~~~p~~~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~-----~~~~~~~~~ 88 (338)
T 3pfi_A 14 SFDETYETSLRPSNFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEM-----SANIKTTAA 88 (338)
T ss_dssp ---------CCCCSGGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHT-----TCCEEEEEG
T ss_pred chhhhhhhccCCCCHHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHh-----CCCeEEecc
Confidence 5567899999999999999999999999888874 344569999999999999999999986 345677777
Q ss_pred CCCCChHHHHHHHHHHHhcCccccCCccceEEEEEeCCCCCCHHHHHHHHHHHHHhcc------------------CccE
Q 017884 113 SDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTK------------------NTRF 174 (364)
Q Consensus 113 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~------------------~~~~ 174 (364)
........+...+.. .+ .+.+++|||++.+....++.|++.+++... .+.+
T Consensus 89 ~~~~~~~~~~~~~~~--------~~---~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (338)
T 3pfi_A 89 PMIEKSGDLAAILTN--------LS---EGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTL 157 (338)
T ss_dssp GGCCSHHHHHHHHHT--------CC---TTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEE
T ss_pred hhccchhHHHHHHHh--------cc---CCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEE
Confidence 655444444433322 11 478999999999999999999999987531 2568
Q ss_pred EEEeeccccCchhhhccc-eEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHh----
Q 017884 175 ALICNQVNKIIPALQSRC-TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMA---- 249 (364)
Q Consensus 175 Il~~~~~~~l~~~l~sr~-~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~a~~~l~~~~~~---- 249 (364)
|.+||....+.+++.+|+ ..+.|++|+.+++..++...+...+..+++++++.++..++|++|.+.+.++.+...
T Consensus 158 i~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~~~ 237 (338)
T 3pfi_A 158 IGATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAKRSRSTPRIALRLLKRVRDFADVN 237 (338)
T ss_dssp EEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHTTTTCHHHHHHHHHHHHHHHHHT
T ss_pred EEeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHhh
Confidence 888888888999999999 899999999999999999999999999999999999999999999999999876432
Q ss_pred -cccCchHHHHHhc
Q 017884 250 -SQQITEEAVYLCT 262 (364)
Q Consensus 250 -~~~i~~~~v~~~~ 262 (364)
...|+.+++...+
T Consensus 238 ~~~~i~~~~~~~~~ 251 (338)
T 3pfi_A 238 DEEIITEKRANEAL 251 (338)
T ss_dssp TCSEECHHHHHHHH
T ss_pred cCCccCHHHHHHHH
Confidence 2358888776544
No 17
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.92 E-value=2.7e-24 Score=199.38 Aligned_cols=225 Identities=16% Similarity=0.231 Sum_probs=168.8
Q ss_pred CCCCCCCCChhhccCCCC-CcchhccHHHHHH---HHHHHhcCCCC--cEEEeCCCCccHHHHHHHHHHHHcCCCCCCcE
Q 017884 34 TPPDIKASPWVEKYRPQS-LADVAAHRDIVDT---IDRLTSENRLP--HLLLYGPPGTGKTSTILAVARKLYGAQYHNMI 107 (364)
Q Consensus 34 ~~~~~~~~~~~~~~~p~~-~~~~vg~~~~~~~---l~~~~~~~~~~--~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~ 107 (364)
.+....+.++.++++|.. |++++|++..+.. +...+..+..+ +++|+||||+|||++|+++++.+.+. ..+
T Consensus 24 ~~~~~~~l~l~~~~~p~~~~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~---~~~ 100 (368)
T 3uk6_A 24 AHSHIRGLGLDDALEPRQASQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPD---TPF 100 (368)
T ss_dssp CCTTCCSCCBCTTSCBCSEETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSS---CCE
T ss_pred hhhhhhccCcccccCcCcchhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhccc---CCc
Confidence 345566788899999998 9999999999776 55666677655 59999999999999999999998642 222
Q ss_pred EEEeCCC-------------------------------------------------------CCChHHHHHHHHHHHhcC
Q 017884 108 LELNASD-------------------------------------------------------DRGIDVVRQQIQDFASTQ 132 (364)
Q Consensus 108 ~~~~~~~-------------------------------------------------------~~~~~~~~~~i~~~~~~~ 132 (364)
+.+++.. ......++..+.......
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 180 (368)
T 3uk6_A 101 TAIAGSEIFSLEMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEW 180 (368)
T ss_dssp EEEEGGGGSCSSSCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHH
T ss_pred ccccchhhhhcccchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHh
Confidence 3333211 000233333333322211
Q ss_pred ccccCC-ccceEEEEEeCCCCCCHHHHHHHHHHHHHhccCccEEEEee------------ccccCchhhhccceEEEecC
Q 017884 133 SFSFGV-KASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICN------------QVNKIIPALQSRCTRFRFAP 199 (364)
Q Consensus 133 ~~~~~~-~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~------------~~~~l~~~l~sr~~~i~~~~ 199 (364)
.. .+. ...+++|+|||+|.+....++.|++.+++++... ++++++ .+..+.+++.+||..+.|++
T Consensus 181 ~~-~g~~~~~~~vl~IDEi~~l~~~~~~~L~~~le~~~~~~-~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~i~~~~ 258 (368)
T 3uk6_A 181 RE-EGKAEIIPGVLFIDEVHMLDIESFSFLNRALESDMAPV-LIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTTP 258 (368)
T ss_dssp HH-HTC---CBCEEEEESGGGSBHHHHHHHHHHTTCTTCCE-EEEEESCSEEECBTSSCEEETTCCHHHHTTEEEEEECC
T ss_pred hh-hccccccCceEEEhhccccChHHHHHHHHHhhCcCCCe-eeeecccceeeeeccCCCCcccCCHHHHhhccEEEecC
Confidence 10 000 0014699999999999999999999999876543 444443 36678899999999999999
Q ss_pred CChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC-CCHHHHHHHHHHHHHhc-----ccCchHHHHHhcC
Q 017884 200 LEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCN-GDMRKALNILQSTHMAS-----QQITEEAVYLCTG 263 (364)
Q Consensus 200 ~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~-g~~r~a~~~l~~~~~~~-----~~i~~~~v~~~~~ 263 (364)
|+.+++.+++..++...+..+++++++.+++++. ||+|.++++++.+...+ ..|+.++|.+++.
T Consensus 259 ~~~~e~~~il~~~~~~~~~~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~~~~~It~~~v~~a~~ 328 (368)
T 3uk6_A 259 YSEKDTKQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKGTEVQVDDIKRVYS 328 (368)
T ss_dssp CCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Confidence 9999999999999999999999999999999998 99999999998776543 4799998887765
No 18
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.91 E-value=2.9e-23 Score=189.09 Aligned_cols=205 Identities=19% Similarity=0.250 Sum_probs=164.3
Q ss_pred hhhccCCCCCcchhccHHHHHHHHHHHhc-----CCCCcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCCCC
Q 017884 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSE-----NRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRG 117 (364)
Q Consensus 43 ~~~~~~p~~~~~~vg~~~~~~~l~~~~~~-----~~~~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~ 117 (364)
|.++|+|.+|++++|++..+..+..++.. ....+++|+||+|+|||++|+++++.+ ...+..+++.....
T Consensus 2 ~~~~~~p~~~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~-----~~~~~~~~~~~~~~ 76 (324)
T 1hqc_A 2 EDLALRPKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHEL-----GVNLRVTSGPAIEK 76 (324)
T ss_dssp ---CCCCCSTTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHH-----TCCEEEECTTTCCS
T ss_pred CccccCcccHHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHh-----CCCEEEEeccccCC
Confidence 56899999999999999999988888763 233559999999999999999999987 34556677665544
Q ss_pred hHHHHHHHHHHHhcCccccCCccceEEEEEeCCCCCCHHHHHHHHHHHHHhc------------------cCccEEEEee
Q 017884 118 IDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYT------------------KNTRFALICN 179 (364)
Q Consensus 118 ~~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~------------------~~~~~Il~~~ 179 (364)
...+...+.. . + ..+.+|+|||++.+....++.|+.++++.. .++.+|++++
T Consensus 77 ~~~l~~~l~~---~----~---~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~ 146 (324)
T 1hqc_A 77 PGDLAAILAN---S----L---EEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATT 146 (324)
T ss_dssp HHHHHHHHTT---T----C---CTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEES
T ss_pred hHHHHHHHHH---h----c---cCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCC
Confidence 3333322211 0 1 146799999999999999999999999853 2467888888
Q ss_pred ccccCchhhhccc-eEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhc-----ccC
Q 017884 180 QVNKIIPALQSRC-TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMAS-----QQI 253 (364)
Q Consensus 180 ~~~~l~~~l~sr~-~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~a~~~l~~~~~~~-----~~i 253 (364)
....+.+++.+|+ .++.|++|+.+++..++...+...+..+++++++.++.+++|++|.+.+.++.+...+ ..|
T Consensus 147 ~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~~~~~~~i 226 (324)
T 1hqc_A 147 RPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSRGTMRVAKRLFRRVRDFAQVAGEEVI 226 (324)
T ss_dssp CCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHSCSCHHHHHHHHHHHTTTSTTTSCSCC
T ss_pred CcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhcCCCC
Confidence 8888999999999 6999999999999999999999889999999999999999999999999998876543 367
Q ss_pred chHHHHHhc
Q 017884 254 TEEAVYLCT 262 (364)
Q Consensus 254 ~~~~v~~~~ 262 (364)
+.+++..+.
T Consensus 227 ~~~~~~~~~ 235 (324)
T 1hqc_A 227 TRERALEAL 235 (324)
T ss_dssp CHHHHHHHH
T ss_pred CHHHHHHHH
Confidence 877776543
No 19
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.90 E-value=4.5e-23 Score=179.47 Aligned_cols=211 Identities=14% Similarity=0.202 Sum_probs=163.5
Q ss_pred CCCCChhhccCC-CCCcchhc---cHHHHHHHHHHHhcCCCCcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCC
Q 017884 38 IKASPWVEKYRP-QSLADVAA---HRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNAS 113 (364)
Q Consensus 38 ~~~~~~~~~~~p-~~~~~~vg---~~~~~~~l~~~~~~~~~~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~ 113 (364)
..+.+|..+++| .+|+++++ +..++..+..++..+..++++|+||+|+|||++++++++.+...+. .+..+++.
T Consensus 12 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~--~~~~~~~~ 89 (242)
T 3bos_A 12 PLQLSLPVHLPDDETFTSYYPAAGNDELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARANELER--RSFYIPLG 89 (242)
T ss_dssp -CCCEEECCCCTTCSTTTSCC--CCHHHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHHHTTC--CEEEEEGG
T ss_pred hhhcCCCCCCCCCCChhhccCCCCCHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHHcCC--eEEEEEHH
Confidence 456889999999 79999997 3588888998888766667999999999999999999999865533 34445443
Q ss_pred CCCChHHHHHHHHHHHhcCccccCCccceEEEEEeCCCCCCHHH--HHHHHHHHHHhccCc--cEEEEeeccc----cCc
Q 017884 114 DDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDA--QFALRRVIEKYTKNT--RFALICNQVN----KII 185 (364)
Q Consensus 114 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~--~~~L~~~le~~~~~~--~~Il~~~~~~----~l~ 185 (364)
... ..+ .... .....+.+|+|||++.+.... ++.|+.+++...... .+|++++... ...
T Consensus 90 ~~~--~~~----~~~~-------~~~~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~ 156 (242)
T 3bos_A 90 IHA--SIS----TALL-------EGLEQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVL 156 (242)
T ss_dssp GGG--GSC----GGGG-------TTGGGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCC
T ss_pred HHH--HHH----HHHH-------HhccCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhh
Confidence 211 000 0001 111247899999999997655 888999888765433 4777776443 455
Q ss_pred hhhhccc---eEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhc----ccCchHHH
Q 017884 186 PALQSRC---TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMAS----QQITEEAV 258 (364)
Q Consensus 186 ~~l~sr~---~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~a~~~l~~~~~~~----~~i~~~~v 258 (364)
+.+.+|+ .++.|++|+.+++.+++...+...++.+++++++.+++.++||+|.+.+.++.+...+ ..||.+++
T Consensus 157 ~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~l~~~l~~~~~~a~~~~~~It~~~v 236 (242)
T 3bos_A 157 PDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQLPEDVGRFLLNRMARDLRTLFDVLDRLDKASMVHQRKLTIPFV 236 (242)
T ss_dssp HHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTCCCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHTCCCCHHHH
T ss_pred hhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhCCCCcHHHH
Confidence 8899998 8999999999999999999999999999999999999999999999999998776543 46888888
Q ss_pred HHhcC
Q 017884 259 YLCTG 263 (364)
Q Consensus 259 ~~~~~ 263 (364)
.+++.
T Consensus 237 ~~~l~ 241 (242)
T 3bos_A 237 KEMLR 241 (242)
T ss_dssp HHHHT
T ss_pred HHHhh
Confidence 77654
No 20
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.90 E-value=3.1e-22 Score=190.26 Aligned_cols=121 Identities=17% Similarity=0.246 Sum_probs=107.9
Q ss_pred EEEEEeCCCCCCHHHHHHHHHHHHHhccCccEEEEe---------ec----cccCchhhhccceEEEecCCChHHHHHHH
Q 017884 143 KLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALIC---------NQ----VNKIIPALQSRCTRFRFAPLEPVHVTERL 209 (364)
Q Consensus 143 ~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~---------~~----~~~l~~~l~sr~~~i~~~~~~~~~~~~~l 209 (364)
+|++|||+|.|+.+++++|+++||+++.. .||+++ .. +..++++++|||..+.|++++.+++.++|
T Consensus 297 ~VliIDEa~~l~~~a~~aLlk~lEe~~~~-~~il~tn~~~~~i~~~~~~~~~~~l~~~i~sR~~~~~~~~~~~~e~~~iL 375 (456)
T 2c9o_A 297 GVLFVDEVHMLDIECFTYLHRALESSIAP-IVIFASNRGNCVIRGTEDITSPHGIPLDLLDRVMIIRTMLYTPQEMKQII 375 (456)
T ss_dssp CEEEEESGGGCBHHHHHHHHHHTTSTTCC-EEEEEECCSEEECBTTSSCEEETTCCHHHHTTEEEEECCCCCHHHHHHHH
T ss_pred eEEEEechhhcCHHHHHHHHHHhhccCCC-EEEEecCCccccccccccccccccCChhHHhhcceeeCCCCCHHHHHHHH
Confidence 69999999999999999999999999888 577777 33 67899999999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHc-CCCHHHHHHHHHHHHHhc-----ccCchHHHHHhcCC
Q 017884 210 KHVIEAEGLDVTEGGLAALVRLC-NGDMRKALNILQSTHMAS-----QQITEEAVYLCTGN 264 (364)
Q Consensus 210 ~~~~~~~~~~i~~~~~~~l~~~~-~g~~r~a~~~l~~~~~~~-----~~i~~~~v~~~~~~ 264 (364)
..++..+++.++++++..++..+ +|++|.++++++.+...+ ..|+.++|..+.+.
T Consensus 376 ~~~~~~~~~~~~~~~~~~i~~~a~~g~~r~a~~ll~~a~~~A~~~~~~~v~~~~v~~~~~~ 436 (456)
T 2c9o_A 376 KIRAQTEGINISEEALNHLGEIGTKTTLRYSVQLLTPANLLAKINGKDSIEKEHVEEISEL 436 (456)
T ss_dssp HHHHHHHTCCBCHHHHHHHHHHHHHSCHHHHHHTHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHhCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhhcCCCccCHHHHHHHHHH
Confidence 99999999999999999999999 999999999998764332 47999999877643
No 21
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.89 E-value=1.5e-21 Score=178.30 Aligned_cols=208 Identities=17% Similarity=0.225 Sum_probs=158.9
Q ss_pred CCChhhccCCCCCcchhccHHHHHHHHHHHhcC-----CCCcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCC
Q 017884 40 ASPWVEKYRPQSLADVAAHRDIVDTIDRLTSEN-----RLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASD 114 (364)
Q Consensus 40 ~~~~~~~~~p~~~~~~vg~~~~~~~l~~~~~~~-----~~~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~ 114 (364)
...|+++++|.+|++++|++.++..+...+..+ ...+++|+||+|+||||++++++..+.+ .+...++..
T Consensus 12 ~~~~~~~lr~~~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~-----~~~~~sg~~ 86 (334)
T 1in4_A 12 YDSGVQFLRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQT-----NIHVTSGPV 86 (334)
T ss_dssp -----CTTSCSSGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTC-----CEEEEETTT
T ss_pred HHHHHHHcCCccHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCC-----CEEEEechH
Confidence 346899999999999999999999888887643 3456999999999999999999999843 233344443
Q ss_pred CCChHHHHHHHHHHHhcCccccCCccceEEEEEeCCCCCCHHHHHHHHHHHHHhc------------------cCccEEE
Q 017884 115 DRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYT------------------KNTRFAL 176 (364)
Q Consensus 115 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~------------------~~~~~Il 176 (364)
......+...+. . .. .+.|++|||++.+.+..++.|+..++... ....++.
T Consensus 87 ~~~~~~l~~~~~----~----~~---~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~ 155 (334)
T 1in4_A 87 LVKQGDMAAILT----S----LE---RGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVG 155 (334)
T ss_dssp CCSHHHHHHHHH----H----CC---TTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEEEE
T ss_pred hcCHHHHHHHHH----H----cc---CCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEE
Confidence 333333322211 1 11 35799999999999888888888776532 1244566
Q ss_pred EeeccccCchhhhccc-eEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhc-----
Q 017884 177 ICNQVNKIIPALQSRC-TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMAS----- 250 (364)
Q Consensus 177 ~~~~~~~l~~~l~sr~-~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~a~~~l~~~~~~~----- 250 (364)
+++.+..+.+.+++|| ....|.+++.+++.+++.+.+...++.++++++..|+..++|++|.+.+.++.+..++
T Consensus 156 at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~~~~~~~~~ia~~~~G~~R~a~~ll~~~~~~a~~~~~ 235 (334)
T 1in4_A 156 ATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSRGTPRIAIRLTKRVRDMLTVVKA 235 (334)
T ss_dssp EESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred ecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCC
Confidence 6778889999999998 5689999999999999999999899999999999999999999999999998764432
Q ss_pred ccCchHHHHHhcC
Q 017884 251 QQITEEAVYLCTG 263 (364)
Q Consensus 251 ~~i~~~~v~~~~~ 263 (364)
+.||.+++.+++.
T Consensus 236 ~~It~~~v~~al~ 248 (334)
T 1in4_A 236 DRINTDIVLKTME 248 (334)
T ss_dssp SSBCHHHHHHHHH
T ss_pred CCcCHHHHHHHHH
Confidence 4788888877653
No 22
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.88 E-value=7.9e-21 Score=177.20 Aligned_cols=286 Identities=17% Similarity=0.157 Sum_probs=188.4
Q ss_pred CCChhhccCCCCCcchhccHHHHHHHHHHHhc----CCCC--cEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCC
Q 017884 40 ASPWVEKYRPQSLADVAAHRDIVDTIDRLTSE----NRLP--HLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNAS 113 (364)
Q Consensus 40 ~~~~~~~~~p~~~~~~vg~~~~~~~l~~~~~~----~~~~--~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~ 113 (364)
..+|..+|+| ++++|++..+..+..++.. .... +++|+||+|+|||++++.+++.+.+.. ...++.+++.
T Consensus 7 ~~~l~~~~~p---~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~-~~~~~~i~~~ 82 (389)
T 1fnn_A 7 DSVFSPSYVP---KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKT-TARFVYINGF 82 (389)
T ss_dssp GGGGSTTCCC---SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSC-CCEEEEEETT
T ss_pred HhhcCCccCC---CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhc-CeeEEEEeCc
Confidence 4578888988 6799999999988888765 2223 699999999999999999999985442 3567778865
Q ss_pred CCCChHHH-HHHHHHHHhcCccc--------------cCCccceEEEEEeCCCCCCHHHHHHHHHHHHHhc----cCccE
Q 017884 114 DDRGIDVV-RQQIQDFASTQSFS--------------FGVKASVKLVLLDEADAMTKDAQFALRRVIEKYT----KNTRF 174 (364)
Q Consensus 114 ~~~~~~~~-~~~i~~~~~~~~~~--------------~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~----~~~~~ 174 (364)
.......+ ......+....+.. +....++.+|+|||++.+....+..|+++++..+ .++.+
T Consensus 83 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~i 162 (389)
T 1fnn_A 83 IYRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIAL 162 (389)
T ss_dssp TCCSHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEE
T ss_pred cCCCHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEE
Confidence 54332222 22121111100000 0001247799999999999899999999998755 37778
Q ss_pred EEEeecc---ccCchhhhccce--EEEecCCChHHHHHHHHHHHHH--cCCCCCHHHHHHHHHHc---------CCCHHH
Q 017884 175 ALICNQV---NKIIPALQSRCT--RFRFAPLEPVHVTERLKHVIEA--EGLDVTEGGLAALVRLC---------NGDMRK 238 (364)
Q Consensus 175 Il~~~~~---~~l~~~l~sr~~--~i~~~~~~~~~~~~~l~~~~~~--~~~~i~~~~~~~l~~~~---------~g~~r~ 238 (364)
|++++.+ ..+.+.+.+|+. .+.|+|++.+++.+++...+.. ....+++++++.+++.+ +||+|.
T Consensus 163 I~~~~~~~~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~ 242 (389)
T 1fnn_A 163 VIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARL 242 (389)
T ss_dssp EEEESSTHHHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHH
T ss_pred EEEECCchHHHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHH
Confidence 8888766 567888888874 7999999999999999998875 23478999999999999 899999
Q ss_pred HHHHHHHHHHh-----cccCchHHHHHhcCCCChHHHHHHHHHHHhccHHHHHHHHHHHHH-hcC--CCHHHHHHHHHHH
Q 017884 239 ALNILQSTHMA-----SQQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKM-RKG--LALVDIVREVTMF 310 (364)
Q Consensus 239 a~~~l~~~~~~-----~~~i~~~~v~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~l~~l~~-~~~--~~~~~i~~~l~~~ 310 (364)
+++.++.+... ...|+.+++..+........+...++.+.. ....++..+..+.. ..+ .....+...+...
T Consensus 243 ~~~~l~~a~~~a~~~~~~~i~~~~v~~~~~~~~~~~~~~~l~~l~~-~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~~ 321 (389)
T 1fnn_A 243 AIDILYRSAYAAQQNGRKHIAPEDVRKSSKEVLFGISEEVLIGLPL-HEKLFLLAIVRSLKISHTPYITFGDAEESYKIV 321 (389)
T ss_dssp HHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHSCCCCHHHHHHSCH-HHHHHHHHHHHHHHHHCSSCEEHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHhhhhHHHHHHcCCH-HHHHHHHHHHHHHhhccCCCccHHHHHHHHHHH
Confidence 99999877653 247888888766543333333333433321 22223333333321 122 3445555444444
Q ss_pred HHhcCC---ChHHHHHHHHHHHH
Q 017884 311 VFKIKM---PSDVRVRLMNDLAD 330 (364)
Q Consensus 311 ~~~~~~---~~~~~~~i~~~l~~ 330 (364)
+...+. +......+++.+.+
T Consensus 322 ~~~~~~~~~~~~~~~~~l~~L~~ 344 (389)
T 1fnn_A 322 CEEYGERPRVHSQLWSYLNDLRE 344 (389)
T ss_dssp HHHTTCCCCCHHHHHHHHHHHHH
T ss_pred HHHcCCCCCCHHHHHHHHHHHHh
Confidence 443333 33444444444433
No 23
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.88 E-value=8e-22 Score=183.68 Aligned_cols=217 Identities=20% Similarity=0.260 Sum_probs=161.4
Q ss_pred CChhhccCCCCCcchhccHHHHHHHHHHHhc----CCCCcEEEeCCCCccHHHHHHHHHHHHcCC----CCCCcEEEEeC
Q 017884 41 SPWVEKYRPQSLADVAAHRDIVDTIDRLTSE----NRLPHLLLYGPPGTGKTSTILAVARKLYGA----QYHNMILELNA 112 (364)
Q Consensus 41 ~~~~~~~~p~~~~~~vg~~~~~~~l~~~~~~----~~~~~lll~G~~G~GKt~la~~l~~~l~~~----~~~~~~~~~~~ 112 (364)
.+|...|.| ++++|++..+..+..++.. +..++++|+||+|+|||++++.+++.+... +....++.+++
T Consensus 10 ~~l~~~~~p---~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~ 86 (387)
T 2v1u_A 10 WVLLPDYVP---DVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNA 86 (387)
T ss_dssp HHHSTTCCC---SCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEET
T ss_pred HhcCCccCC---CCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEEC
Confidence 456667777 7799999999999988853 344559999999999999999999987432 22466778887
Q ss_pred CCCCChHHHHHH-------------------HHHHHhcCccccCCccceEEEEEeCCCCCCHH--HHHHHHHHHHHh---
Q 017884 113 SDDRGIDVVRQQ-------------------IQDFASTQSFSFGVKASVKLVLLDEADAMTKD--AQFALRRVIEKY--- 168 (364)
Q Consensus 113 ~~~~~~~~~~~~-------------------i~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~--~~~~L~~~le~~--- 168 (364)
........+... +..+... ....+.+.+|+|||+|.+... .++.|..+++..
T Consensus 87 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~----l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~ 162 (387)
T 2v1u_A 87 RHRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKR----LSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQEL 162 (387)
T ss_dssp TTSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHH----HTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC
T ss_pred CcCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHH----HhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhc
Confidence 654332221111 1111111 111124779999999999876 778888888765
Q ss_pred --ccCccEEEEeecc---ccCchhhhccc--eEEEecCCChHHHHHHHHHHHHH--cCCCCCHHHHHHHHHHcC---CCH
Q 017884 169 --TKNTRFALICNQV---NKIIPALQSRC--TRFRFAPLEPVHVTERLKHVIEA--EGLDVTEGGLAALVRLCN---GDM 236 (364)
Q Consensus 169 --~~~~~~Il~~~~~---~~l~~~l~sr~--~~i~~~~~~~~~~~~~l~~~~~~--~~~~i~~~~~~~l~~~~~---g~~ 236 (364)
+..+.+|++++.. ..+.+.+.+|+ ..+.|+|++.+++..++...+.. .+..+++++++.+++.++ ||+
T Consensus 163 ~~~~~~~~I~~t~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~ 242 (387)
T 2v1u_A 163 GDRVWVSLVGITNSLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDPDVVPLCAALAAREHGDA 242 (387)
T ss_dssp -----CEEEEECSCSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHHSSSCCH
T ss_pred CCCceEEEEEEECCCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhccCH
Confidence 4466788888766 67888999998 68999999999999999999876 567889999999999998 999
Q ss_pred HHHHHHHHHHHHhc-----ccCchHHHHHhcCC
Q 017884 237 RKALNILQSTHMAS-----QQITEEAVYLCTGN 264 (364)
Q Consensus 237 r~a~~~l~~~~~~~-----~~i~~~~v~~~~~~ 264 (364)
|.+++.++.+...+ ..|+.+++..++..
T Consensus 243 r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~~ 275 (387)
T 2v1u_A 243 RRALDLLRVAGEIAERRREERVRREHVYSARAE 275 (387)
T ss_dssp HHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHH
Confidence 99999998776532 47899998877653
No 24
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.87 E-value=2.3e-20 Score=174.09 Aligned_cols=189 Identities=19% Similarity=0.235 Sum_probs=147.8
Q ss_pred ChhhccCCCCCcchhccHHHHHHHHHHHhc------------CCCCcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEE
Q 017884 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSE------------NRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILE 109 (364)
Q Consensus 42 ~~~~~~~p~~~~~~vg~~~~~~~l~~~~~~------------~~~~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~ 109 (364)
-|+++|+|.+|++++|++.+++.|..++.. ....++||+||||+|||++|+++++.+ ...++.
T Consensus 104 ~~~~~~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~-----~~~~~~ 178 (389)
T 3vfd_A 104 EIVDNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAES-----NATFFN 178 (389)
T ss_dssp TTBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHT-----TCEEEE
T ss_pred hhhccCCCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhh-----cCcEEE
Confidence 589999999999999999999999888732 223459999999999999999999986 467778
Q ss_pred EeCCCCCC------hHHHHHHHHHHHhcCccccCCccceEEEEEeCCCCCC-----------HHHHHHHHHHHHHhc---
Q 017884 110 LNASDDRG------IDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMT-----------KDAQFALRRVIEKYT--- 169 (364)
Q Consensus 110 ~~~~~~~~------~~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~-----------~~~~~~L~~~le~~~--- 169 (364)
+++....+ ...+...+...... .+.+|+|||+|.+. ...++.|+..++...
T Consensus 179 v~~~~l~~~~~g~~~~~~~~~~~~a~~~---------~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~ 249 (389)
T 3vfd_A 179 ISAASLTSKYVGEGEKLVRALFAVAREL---------QPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAG 249 (389)
T ss_dssp ECSCCC-------CHHHHHHHHHHHHHS---------SSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC---
T ss_pred eeHHHhhccccchHHHHHHHHHHHHHhc---------CCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccC
Confidence 87765422 11222222222111 35799999999883 345667788777543
Q ss_pred -cCccEEEEeeccccCchhhhccc-eEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Q 017884 170 -KNTRFALICNQVNKIIPALQSRC-TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQ 244 (364)
Q Consensus 170 -~~~~~Il~~~~~~~l~~~l~sr~-~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~a~~~l~ 244 (364)
..+++|.++|.+..+.+.+.+|| ..+.|+.|+.++...++..++...+..++++.+..|+..+.|..+..+..|.
T Consensus 250 ~~~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~~~~la~~~~g~~~~~l~~L~ 326 (389)
T 3vfd_A 250 DDRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALA 326 (389)
T ss_dssp --CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCCSCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CCCEEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 45677888899999999999999 5799999999999999999999989999999999999999998887666553
No 25
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.86 E-value=4.5e-20 Score=165.89 Aligned_cols=191 Identities=18% Similarity=0.226 Sum_probs=145.8
Q ss_pred ChhhccCCCCCcchhccHHHHHHHHHHHhc------------CCCCcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEE
Q 017884 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSE------------NRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILE 109 (364)
Q Consensus 42 ~~~~~~~p~~~~~~vg~~~~~~~l~~~~~~------------~~~~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~ 109 (364)
-|.++++|.+|++++|++.+++.+...+.. ....+++|+||||+|||++|+++++.+ ...++.
T Consensus 10 ~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~-----~~~~~~ 84 (297)
T 3b9p_A 10 EIVEGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATEC-----SATFLN 84 (297)
T ss_dssp TTBCCSSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHT-----TCEEEE
T ss_pred HhccCCCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHh-----CCCeEE
Confidence 377889999999999999999999888743 123459999999999999999999987 455667
Q ss_pred EeCCCCCC-----h-HHHHHHHHHHHhcCccccCCccceEEEEEeCCCCCC-----------HHHHHHHHHHHHHhcc--
Q 017884 110 LNASDDRG-----I-DVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMT-----------KDAQFALRRVIEKYTK-- 170 (364)
Q Consensus 110 ~~~~~~~~-----~-~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~-----------~~~~~~L~~~le~~~~-- 170 (364)
+++....+ . ...+..+..... ..+.+|+|||++.+. ...++.|+..++..+.
T Consensus 85 i~~~~l~~~~~~~~~~~~~~~~~~~~~---------~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~ 155 (297)
T 3b9p_A 85 ISAASLTSKYVGDGEKLVRALFAVARH---------MQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNP 155 (297)
T ss_dssp EESTTTSSSSCSCHHHHHHHHHHHHHH---------TCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC---
T ss_pred eeHHHHhhcccchHHHHHHHHHHHHHH---------cCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccC
Confidence 77654321 1 122222222211 146899999999884 3456678888887653
Q ss_pred ---CccEEEEeeccccCchhhhccc-eEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHH-HHHH
Q 017884 171 ---NTRFALICNQVNKIIPALQSRC-TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALN-ILQS 245 (364)
Q Consensus 171 ---~~~~Il~~~~~~~l~~~l~sr~-~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~a~~-~l~~ 245 (364)
.+.+|.+||.+..+.+++.+|| ..+.++.|+.++...++...+...+..++++.++.+++.+.|..+..+. +++.
T Consensus 156 ~~~~v~vi~~tn~~~~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~la~~~~g~~~~~l~~l~~~ 235 (297)
T 3b9p_A 156 DGDRIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKD 235 (297)
T ss_dssp ---CEEEEEEESCGGGBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGGGSCCSCHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred CCCcEEEEeecCChhhCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 4667788888889999999998 7788999999999999999988888889999999999999998776664 4443
Q ss_pred H
Q 017884 246 T 246 (364)
Q Consensus 246 ~ 246 (364)
.
T Consensus 236 a 236 (297)
T 3b9p_A 236 A 236 (297)
T ss_dssp H
T ss_pred H
Confidence 3
No 26
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.85 E-value=1.5e-20 Score=175.07 Aligned_cols=220 Identities=17% Similarity=0.127 Sum_probs=157.7
Q ss_pred CCCChhhccCCCCCcchhccHHHHHHHHHHHhc----CCCCcEEEeCCCCccHHHHHHHHHHHHcCC-----CC-CCcEE
Q 017884 39 KASPWVEKYRPQSLADVAAHRDIVDTIDRLTSE----NRLPHLLLYGPPGTGKTSTILAVARKLYGA-----QY-HNMIL 108 (364)
Q Consensus 39 ~~~~~~~~~~p~~~~~~vg~~~~~~~l~~~~~~----~~~~~lll~G~~G~GKt~la~~l~~~l~~~-----~~-~~~~~ 108 (364)
+..+|..+|+| ++++|++..+..+..++.. +..++++|+||+|+|||++++++++.+.+. +. ...++
T Consensus 9 ~~~~l~~~~~p---~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~ 85 (384)
T 2qby_B 9 PKVFIDPLSVF---KEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQA 85 (384)
T ss_dssp TTTTTCHHHHC---SSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEE
T ss_pred cHhhcCCccCC---CCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEE
Confidence 45679999999 7799999999988766653 334459999999999999999999987432 12 56677
Q ss_pred EEeCCCCC-ChHH-HHHHHHHHHhcCcc---------------ccCCccceEEEEEeCCCCCCHHH-HHH-HHHHHHHhc
Q 017884 109 ELNASDDR-GIDV-VRQQIQDFASTQSF---------------SFGVKASVKLVLLDEADAMTKDA-QFA-LRRVIEKYT 169 (364)
Q Consensus 109 ~~~~~~~~-~~~~-~~~~i~~~~~~~~~---------------~~~~~~~~~viiiDe~~~l~~~~-~~~-L~~~le~~~ 169 (364)
.+++.... .... +...+..+...... .... .+.+|+|||+|.+.... ++. +..+++..
T Consensus 86 ~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~--~~~vlilDEi~~l~~~~~~~~~l~~l~~~~- 162 (384)
T 2qby_B 86 YVNCREVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRN--IRAIIYLDEVDTLVKRRGGDIVLYQLLRSD- 162 (384)
T ss_dssp EEEHHHHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSS--SCEEEEEETTHHHHHSTTSHHHHHHHHTSS-
T ss_pred EEECccCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhcc--CCCEEEEECHHHhccCCCCceeHHHHhcCC-
Confidence 77754322 2111 11111111000000 0111 12399999999996542 455 44554444
Q ss_pred cCccEEEEeecc---ccCchhhhccc-eEEEecCCChHHHHHHHHHHHHH--cCCCCCHHHHHHHHHHcC---CCHHHHH
Q 017884 170 KNTRFALICNQV---NKIIPALQSRC-TRFRFAPLEPVHVTERLKHVIEA--EGLDVTEGGLAALVRLCN---GDMRKAL 240 (364)
Q Consensus 170 ~~~~~Il~~~~~---~~l~~~l~sr~-~~i~~~~~~~~~~~~~l~~~~~~--~~~~i~~~~~~~l~~~~~---g~~r~a~ 240 (364)
.++.+|++++.. ..+.+.+.+|+ ..+.|+|++.+++.+++..++.. .+..+++++++.+++.++ ||+|.++
T Consensus 163 ~~~~iI~~t~~~~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~G~~r~a~ 242 (384)
T 2qby_B 163 ANISVIMISNDINVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAISAKEHGDARKAV 242 (384)
T ss_dssp SCEEEEEECSSTTTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHHTTCCCHHHHH
T ss_pred cceEEEEEECCCchHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHHhccCCHHHHH
Confidence 677888888876 57888998994 79999999999999999998875 456789999999999998 9999999
Q ss_pred HHHHHHHHhc---ccCchHHHHHhcCC
Q 017884 241 NILQSTHMAS---QQITEEAVYLCTGN 264 (364)
Q Consensus 241 ~~l~~~~~~~---~~i~~~~v~~~~~~ 264 (364)
+.++.+...+ ..|+.+++..++..
T Consensus 243 ~~l~~a~~~a~~~~~i~~~~v~~~~~~ 269 (384)
T 2qby_B 243 NLLFRAAQLASGGGIIRKEHVDKAIVD 269 (384)
T ss_dssp HHHHHHHHHTTSSSCCCHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCccCHHHHHHHHHH
Confidence 9998876544 47898988877654
No 27
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.85 E-value=2.6e-20 Score=168.42 Aligned_cols=200 Identities=20% Similarity=0.260 Sum_probs=150.7
Q ss_pred CChhhccCCCCC-------c-chhccHHHHHHHHHHHh---------------cCCCCcEEEeCCCCccHHHHHHHHHHH
Q 017884 41 SPWVEKYRPQSL-------A-DVAAHRDIVDTIDRLTS---------------ENRLPHLLLYGPPGTGKTSTILAVARK 97 (364)
Q Consensus 41 ~~~~~~~~p~~~-------~-~~vg~~~~~~~l~~~~~---------------~~~~~~lll~G~~G~GKt~la~~l~~~ 97 (364)
.++.+.|++..+ + +++|++.+++.+...+. .....+++|+||||+|||++|+++++.
T Consensus 11 ~~~~~~~~~~~~~~~~~~l~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~ 90 (309)
T 3syl_A 11 IDLRAEYEGSGAKEVLEELDRELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGL 90 (309)
T ss_dssp CCHHHHHHHTTHHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCChhhccccHHHHHHHHHHHccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 445566666543 3 68999999998887765 223345999999999999999999999
Q ss_pred HcCCCC--CCcEEEEeCCCCCC--hHHHHHHHHHHHhcCccccCCccceEEEEEeCCCCC---------CHHHHHHHHHH
Q 017884 98 LYGAQY--HNMILELNASDDRG--IDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAM---------TKDAQFALRRV 164 (364)
Q Consensus 98 l~~~~~--~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l---------~~~~~~~L~~~ 164 (364)
+.+.+. ...++.+++....+ .......+....... .+.+|+|||+|.+ ....++.|++.
T Consensus 91 l~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~--------~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~ 162 (309)
T 3syl_A 91 LHRLGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEVLKRA--------MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQV 162 (309)
T ss_dssp HHHTTSSSSCCEEEECGGGTCCSSTTCHHHHHHHHHHHH--------TTSEEEEETGGGSCCCC---CCTHHHHHHHHHH
T ss_pred HHhcCCcCCCcEEEEcHHHhhhhcccccHHHHHHHHHhc--------CCCEEEEEChhhhccCCCcccccHHHHHHHHHH
Confidence 865432 33566666544211 111111122221110 2569999999987 77889999999
Q ss_pred HHHhccCccEEEEeeccc-----cCchhhhccc-eEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-------
Q 017884 165 IEKYTKNTRFALICNQVN-----KIIPALQSRC-TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRL------- 231 (364)
Q Consensus 165 le~~~~~~~~Il~~~~~~-----~l~~~l~sr~-~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~------- 231 (364)
+++.+.++.+|++++... .+.+++++|| ..+.|++|+.+++..++..++.+.+..+++++++.++.+
T Consensus 163 l~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~l~~~~~~~~~~ 242 (309)
T 3syl_A 163 MENNRDDLVVILAGYADRMENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLDDQNYQMTPEAETALRAYIGLRRNQ 242 (309)
T ss_dssp HHHCTTTCEEEEEECHHHHHHHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHTTS
T ss_pred HhcCCCCEEEEEeCChHHHHHHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccC
Confidence 999888888888886432 3468999999 899999999999999999999999999999999999986
Q ss_pred -cCCCHHHHHHHHHHHHH
Q 017884 232 -CNGDMRKALNILQSTHM 248 (364)
Q Consensus 232 -~~g~~r~a~~~l~~~~~ 248 (364)
..||+|.+.+.++.+..
T Consensus 243 ~~~gn~r~l~~~l~~a~~ 260 (309)
T 3syl_A 243 PHFANARSIRNALDRARL 260 (309)
T ss_dssp SSCCHHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHH
Confidence 35999999999987764
No 28
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.84 E-value=9.5e-20 Score=167.50 Aligned_cols=193 Identities=18% Similarity=0.201 Sum_probs=138.7
Q ss_pred CChhhccCCCCCcchhccHHHHHHHHHHHhc-----------CCC-CcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEE
Q 017884 41 SPWVEKYRPQSLADVAAHRDIVDTIDRLTSE-----------NRL-PHLLLYGPPGTGKTSTILAVARKLYGAQYHNMIL 108 (364)
Q Consensus 41 ~~~~~~~~p~~~~~~vg~~~~~~~l~~~~~~-----------~~~-~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~ 108 (364)
..|..++.+.+|++++|++.+++.|...+.. ... .+++|+||||+|||++|+++++.+ ...++
T Consensus 39 ~~~~~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~-----~~~~~ 113 (355)
T 2qp9_X 39 SAILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA-----NSTFF 113 (355)
T ss_dssp --------CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHH-----TCEEE
T ss_pred hhhcccCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh-----CCCEE
Confidence 4567788899999999999999999888731 122 349999999999999999999998 34566
Q ss_pred EEeCCCC------CChHHHHHHHHHHHhcCccccCCccceEEEEEeCCCCCCH-----------HHHHHHHHHHHHh---
Q 017884 109 ELNASDD------RGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTK-----------DAQFALRRVIEKY--- 168 (364)
Q Consensus 109 ~~~~~~~------~~~~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~~-----------~~~~~L~~~le~~--- 168 (364)
.+++... .....++..+..... ..+.||+|||+|.+.. ..++.|+..|+..
T Consensus 114 ~v~~~~l~~~~~g~~~~~~~~~f~~a~~---------~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~ 184 (355)
T 2qp9_X 114 SVSSSDLVSKWMGESEKLVKQLFAMARE---------NKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGND 184 (355)
T ss_dssp EEEHHHHHSCC---CHHHHHHHHHHHHH---------TSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC--
T ss_pred EeeHHHHhhhhcchHHHHHHHHHHHHHH---------cCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhccccc
Confidence 6654321 111222222222211 1368999999999973 2467788888753
Q ss_pred ccCccEEEEeeccccCchhhhccc-eEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHH
Q 017884 169 TKNTRFALICNQVNKIIPALQSRC-TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNG-DMRKALNILQST 246 (364)
Q Consensus 169 ~~~~~~Il~~~~~~~l~~~l~sr~-~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g-~~r~a~~~l~~~ 246 (364)
...+.+|.+||.+..+.+++.+|| ..+.+++|+.++...++..++...+..+++..++.|++.+.| +.+.+.++++.+
T Consensus 185 ~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~~~~l~~la~~t~G~sg~dl~~l~~~A 264 (355)
T 2qp9_X 185 SQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIAVVVKDA 264 (355)
T ss_dssp -CCEEEEEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred CCCeEEEeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 446677888899999999999999 789999999999999999999888777899999999999987 555555555444
Q ss_pred H
Q 017884 247 H 247 (364)
Q Consensus 247 ~ 247 (364)
.
T Consensus 265 ~ 265 (355)
T 2qp9_X 265 L 265 (355)
T ss_dssp H
T ss_pred H
Confidence 3
No 29
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.84 E-value=5.5e-20 Score=173.64 Aligned_cols=213 Identities=11% Similarity=0.203 Sum_probs=158.2
Q ss_pred ccCCC-CCcchh-c--cHHHHHHHHHHHhcCC-CCcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCCCChHH
Q 017884 46 KYRPQ-SLADVA-A--HRDIVDTIDRLTSENR-LPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDV 120 (364)
Q Consensus 46 ~~~p~-~~~~~v-g--~~~~~~~l~~~~~~~~-~~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 120 (364)
.+.|. +|++++ | +......+........ .++++|+||+|+|||++++++++.+.+......++.+++... ...
T Consensus 97 ~l~~~~tfd~fv~g~~n~~a~~~~~~~a~~~~~~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~--~~~ 174 (440)
T 2z4s_A 97 PLNPDYTFENFVVGPGNSFAYHAALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKF--LND 174 (440)
T ss_dssp CCCTTCSGGGCCCCTTTHHHHHHHHHHHHSTTSSCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHH--HHH
T ss_pred CCCCCCChhhcCCCCchHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHH--HHH
Confidence 34554 789988 5 4445556666666544 456999999999999999999999865444556666665431 111
Q ss_pred HHHHHH-----HHHhcCccccCCccceEEEEEeCCCCCCH--HHHHHHHHHHHHhcc-CccEEEEeeccc----cCchhh
Q 017884 121 VRQQIQ-----DFASTQSFSFGVKASVKLVLLDEADAMTK--DAQFALRRVIEKYTK-NTRFALICNQVN----KIIPAL 188 (364)
Q Consensus 121 ~~~~i~-----~~~~~~~~~~~~~~~~~viiiDe~~~l~~--~~~~~L~~~le~~~~-~~~~Il~~~~~~----~l~~~l 188 (364)
+...+. .+... +.. .+.+++|||++.+.. ..++.|+.+++.... ...+|++++.+. .+.+.+
T Consensus 175 ~~~~~~~~~~~~~~~~----~~~--~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L 248 (440)
T 2z4s_A 175 LVDSMKEGKLNEFREK----YRK--KVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRL 248 (440)
T ss_dssp HHHHHHTTCHHHHHHH----HTT--TCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHH
T ss_pred HHHHHHcccHHHHHHH----hcC--CCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHH
Confidence 111111 11111 110 367999999999986 788899999987544 455677776532 377899
Q ss_pred hccc---eEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhc----ccCchHHHHHh
Q 017884 189 QSRC---TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMAS----QQITEEAVYLC 261 (364)
Q Consensus 189 ~sr~---~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~a~~~l~~~~~~~----~~i~~~~v~~~ 261 (364)
.+|| .++.+++|+.+++..++...+...++.++++++++|+..++||+|.+.+.++.+...+ ..||.+++.++
T Consensus 249 ~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~~e~l~~la~~~~gn~R~l~~~L~~~~~~a~~~~~~It~~~~~~~ 328 (440)
T 2z4s_A 249 VSRFQMGLVAKLEPPDEETRKSIARKMLEIEHGELPEEVLNFVAENVDDNLRRLRGAIIKLLVYKETTGKEVDLKEAILL 328 (440)
T ss_dssp HHHHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHCCSCHHHHHHHHHHHHHHHHHSSSCCCHHHHHHH
T ss_pred HhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 9998 6899999999999999999999999999999999999999999999999998776543 47999999988
Q ss_pred cCCCC
Q 017884 262 TGNPL 266 (364)
Q Consensus 262 ~~~~~ 266 (364)
+....
T Consensus 329 l~~~~ 333 (440)
T 2z4s_A 329 LKDFI 333 (440)
T ss_dssp TSTTT
T ss_pred HHHHh
Confidence 87644
No 30
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.84 E-value=5.9e-20 Score=166.88 Aligned_cols=196 Identities=16% Similarity=0.217 Sum_probs=144.9
Q ss_pred CChhhccCCCCCcchhccHHHHHHHHHHHh----------cC-C-CCcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEE
Q 017884 41 SPWVEKYRPQSLADVAAHRDIVDTIDRLTS----------EN-R-LPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMIL 108 (364)
Q Consensus 41 ~~~~~~~~p~~~~~~vg~~~~~~~l~~~~~----------~~-~-~~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~ 108 (364)
..|..++.+.+|++++|++.+++.|+..+. .+ . ..+++|+||||+|||++|+++++.+ ...++
T Consensus 6 ~~~~~~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~-----~~~~~ 80 (322)
T 3eie_A 6 TAILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA-----NSTFF 80 (322)
T ss_dssp CCSEEECCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHH-----TCEEE
T ss_pred cceeecCCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHH-----CCCEE
Confidence 357888999999999999999999998872 12 2 2349999999999999999999997 45666
Q ss_pred EEeCCCC--CChHHHHHHHHHHHhcCccccCCccceEEEEEeCCCCCCH-----------HHHHHHHHHHHHh---ccCc
Q 017884 109 ELNASDD--RGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTK-----------DAQFALRRVIEKY---TKNT 172 (364)
Q Consensus 109 ~~~~~~~--~~~~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~~-----------~~~~~L~~~le~~---~~~~ 172 (364)
.++++.. .........+........ ...+.+|+|||+|.+.. ..++.|+..++.. ...+
T Consensus 81 ~v~~~~l~~~~~g~~~~~~~~~f~~a~-----~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v 155 (322)
T 3eie_A 81 SVSSSDLVSKWMGESEKLVKQLFAMAR-----ENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGV 155 (322)
T ss_dssp EEEHHHHHTTTGGGHHHHHHHHHHHHH-----HTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCE
T ss_pred EEchHHHhhcccchHHHHHHHHHHHHH-----hcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCce
Confidence 7765431 111112222222211100 01368999999999853 3467788888754 3456
Q ss_pred cEEEEeeccccCchhhhccc-eEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHH
Q 017884 173 RFALICNQVNKIIPALQSRC-TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNG-DMRKALNILQST 246 (364)
Q Consensus 173 ~~Il~~~~~~~l~~~l~sr~-~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g-~~r~a~~~l~~~ 246 (364)
.+|.+||.+..+++++.+|+ ..+.++.|+.++..+++...+...+..+++..++.|++.+.| +.+.+.++++.+
T Consensus 156 ~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~l~~la~~t~g~sg~di~~l~~~a 231 (322)
T 3eie_A 156 LVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDA 231 (322)
T ss_dssp EEEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCCCCCHHHHHHHHHTTTTCCHHHHHHHHHHH
T ss_pred EEEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 67778899999999999999 778999999999999999999888888899999999999977 455555555443
No 31
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.83 E-value=4.3e-19 Score=163.35 Aligned_cols=195 Identities=15% Similarity=0.190 Sum_probs=142.8
Q ss_pred hhhccCCCCCcchhccHHHHHHHHHHHhc------------CCCCcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEE
Q 017884 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSE------------NRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILEL 110 (364)
Q Consensus 43 ~~~~~~p~~~~~~vg~~~~~~~l~~~~~~------------~~~~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~ 110 (364)
+.++++|.+|++++|++.+++.|...+.. ....+++|+||||+|||++|+++++.+ ...++.+
T Consensus 74 i~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~-----~~~~~~i 148 (357)
T 3d8b_A 74 IMDHGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQS-----GATFFSI 148 (357)
T ss_dssp TBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHT-----TCEEEEE
T ss_pred cccCCCCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHc-----CCeEEEE
Confidence 46678999999999999999999888752 233449999999999999999999986 4566777
Q ss_pred eCCCCCC--hHHHHHHHHHHHhcCccccCCccceEEEEEeCCCCCCH-----------HHHHHHHHHHHHh----ccCcc
Q 017884 111 NASDDRG--IDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTK-----------DAQFALRRVIEKY----TKNTR 173 (364)
Q Consensus 111 ~~~~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~~-----------~~~~~L~~~le~~----~~~~~ 173 (364)
+++.... .......+........ ...+.+|+|||+|.+.. ..++.|+..++.. ..++.
T Consensus 149 ~~~~l~~~~~g~~~~~~~~~~~~a~-----~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v~ 223 (357)
T 3d8b_A 149 SASSLTSKWVGEGEKMVRALFAVAR-----CQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRIL 223 (357)
T ss_dssp EGGGGCCSSTTHHHHHHHHHHHHHH-----HTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCEE
T ss_pred ehHHhhccccchHHHHHHHHHHHHH-----hcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCEE
Confidence 7654321 1111112222111100 01368999999988742 3456677777643 34566
Q ss_pred EEEEeeccccCchhhhccc-eEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHH
Q 017884 174 FALICNQVNKIIPALQSRC-TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNG-DMRKALNILQSTH 247 (364)
Q Consensus 174 ~Il~~~~~~~l~~~l~sr~-~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g-~~r~a~~~l~~~~ 247 (364)
+|.+||.+..+.+++.+|| ..+.++.|+.++...++...+...+..++++.++.|+..+.| ..+.+..+++..+
T Consensus 224 vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~l~~la~~t~G~s~~dl~~l~~~a~ 299 (357)
T 3d8b_A 224 VVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCREAS 299 (357)
T ss_dssp EEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred EEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 7778888889999999999 578999999999999999999988888999999999999988 4444444444443
No 32
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.83 E-value=3.9e-19 Score=156.38 Aligned_cols=205 Identities=18% Similarity=0.207 Sum_probs=145.7
Q ss_pred ChhhccCCCCCcchhccHHHHHHHHHHHhc-----------C-CCCcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEE
Q 017884 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSE-----------N-RLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILE 109 (364)
Q Consensus 42 ~~~~~~~p~~~~~~vg~~~~~~~l~~~~~~-----------~-~~~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~ 109 (364)
+|.+++.+.+|++++|.+.+++.+...+.. . ...+++|+||||+|||++++++++.+. ..++.
T Consensus 1 ~~~~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~-----~~~~~ 75 (257)
T 1lv7_A 1 MLTEDQIKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAK-----VPFFT 75 (257)
T ss_dssp CEEECSSCCCGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHT-----CCEEE
T ss_pred CCCccCCCCCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcC-----CCEEE
Confidence 588999999999999999999988776542 1 233499999999999999999999873 34566
Q ss_pred EeCCCCC------ChHHHHHHHHHHHhcCccccCCccceEEEEEeCCCCCCH--------------HHHHHHHHHHHHh-
Q 017884 110 LNASDDR------GIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTK--------------DAQFALRRVIEKY- 168 (364)
Q Consensus 110 ~~~~~~~------~~~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~~--------------~~~~~L~~~le~~- 168 (364)
+++.... ....+...+...... .+.+++|||+|.+.. ...+.++..++..
T Consensus 76 i~~~~~~~~~~~~~~~~~~~~~~~a~~~---------~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~ 146 (257)
T 1lv7_A 76 ISGSDFVEMFVGVGASRVRDMFEQAKKA---------APCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFE 146 (257)
T ss_dssp ECSCSSTTSCCCCCHHHHHHHHHHHHTT---------CSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCC
T ss_pred EeHHHHHHHhhhhhHHHHHHHHHHHHHc---------CCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcc
Confidence 6665421 122333333332211 357999999977642 2345566666643
Q ss_pred -ccCccEEEEeeccccCchhhhc--cc-eEEEecCCChHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-CHHHHHHH
Q 017884 169 -TKNTRFALICNQVNKIIPALQS--RC-TRFRFAPLEPVHVTERLKHVIEAEGLDVTEG-GLAALVRLCNG-DMRKALNI 242 (364)
Q Consensus 169 -~~~~~~Il~~~~~~~l~~~l~s--r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~-~~~~l~~~~~g-~~r~a~~~ 242 (364)
...+.+|.++|.+..+.+.+.+ |+ ..+.+++|+.++..+++...++..+ ++++ ....++..+.| +.|.+.+.
T Consensus 147 ~~~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~--l~~~~~~~~la~~~~G~~~~dl~~l 224 (257)
T 1lv7_A 147 GNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVP--LAPDIDAAIIARGTPGFSGADLANL 224 (257)
T ss_dssp SSSCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSC--BCTTCCHHHHHHTCTTCCHHHHHHH
T ss_pred cCCCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCC--CCccccHHHHHHHcCCCCHHHHHHH
Confidence 3345677788888889999887 76 6788999999999999988776543 3333 36778888999 99999988
Q ss_pred HHHHHHhc-----ccCchHHHHHhc
Q 017884 243 LQSTHMAS-----QQITEEAVYLCT 262 (364)
Q Consensus 243 l~~~~~~~-----~~i~~~~v~~~~ 262 (364)
++.+...+ ..|+.+++..++
T Consensus 225 ~~~a~~~a~~~~~~~i~~~~~~~a~ 249 (257)
T 1lv7_A 225 VNEAALFAARGNKRVVSMVEFEKAK 249 (257)
T ss_dssp HHHHHHHHHHTTCSSBCHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcccHHHHHHHH
Confidence 87665432 367777776543
No 33
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.82 E-value=7e-19 Score=157.42 Aligned_cols=191 Identities=10% Similarity=0.101 Sum_probs=136.3
Q ss_pred hhccHHHHHHHH----HHHhcCCCCcEEEeCCCCccHHHHHHHHHHHHcCCC-----CCCcEEEEeCCCCCChHHHHHHH
Q 017884 55 VAAHRDIVDTID----RLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ-----YHNMILELNASDDRGIDVVRQQI 125 (364)
Q Consensus 55 ~vg~~~~~~~l~----~~~~~~~~~~lll~G~~G~GKt~la~~l~~~l~~~~-----~~~~~~~~~~~~~~~~~~~~~~i 125 (364)
+.|+++.+..+. ..+..+..++++|+||||||||++++.+++++.... ..+.++++|+........+...+
T Consensus 22 L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I 101 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKI 101 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHH
Confidence 778877777655 445567777899999999999999999999985321 24578889987644332222111
Q ss_pred ------------------HHHHhcCccccCCccceEEEEEeCCCCCCHHHHHHHHHHHHHhc---cCccEEEEeeccc--
Q 017884 126 ------------------QDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYT---KNTRFALICNQVN-- 182 (364)
Q Consensus 126 ------------------~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~---~~~~~Il~~~~~~-- 182 (364)
.......+ .......||+|||+|.+. .++.|+.+++.+. ....+|+++|..+
T Consensus 102 ~~~L~g~~~~~~~~~~~L~~~f~~~~---~~~~~~~ii~lDE~d~l~--~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~ 176 (318)
T 3te6_A 102 WFAISKENLCGDISLEALNFYITNVP---KAKKRKTLILIQNPENLL--SEKILQYFEKWISSKNSKLSIICVGGHNVTI 176 (318)
T ss_dssp HHHHSCCC--CCCCHHHHHHHHHHSC---GGGSCEEEEEEECCSSSC--CTHHHHHHHHHHHCSSCCEEEEEECCSSCCC
T ss_pred HHHhcCCCCCchHHHHHHHHHHHHhh---hccCCceEEEEecHHHhh--cchHHHHHHhcccccCCcEEEEEEecCcccc
Confidence 11111110 011246799999999998 6777888877542 2445677777654
Q ss_pred --cCchhhhccc--eEEEecCCChHHHHHHHHHHHHHcCC-----------------------------------CCCHH
Q 017884 183 --KIIPALQSRC--TRFRFAPLEPVHVTERLKHVIEAEGL-----------------------------------DVTEG 223 (364)
Q Consensus 183 --~l~~~l~sr~--~~i~~~~~~~~~~~~~l~~~~~~~~~-----------------------------------~i~~~ 223 (364)
.+.+.++||+ .++.|+|++.+++.+++..++..... .++++
T Consensus 177 ~~~L~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 256 (318)
T 3te6_A 177 REQINIMPSLKAHFTEIKLNKVDKNELQQMIITRLKSLLKPFHVKVNDKKEMTIYNNIREGQNQKIPDNVIVINHKINNK 256 (318)
T ss_dssp HHHHHTCHHHHTTEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEECTTCCEEECCCC--------CTTEEEECEECCHH
T ss_pred hhhcchhhhccCCceEEEeCCCCHHHHHHHHHHHHHhhhccccccccccccccccccccccccccccccccccccccCHH
Confidence 2456778887 67999999999999999999986421 37999
Q ss_pred HHHHHHH---HcCCCHHHHHHHHHHHHHhc
Q 017884 224 GLAALVR---LCNGDMRKALNILQSTHMAS 250 (364)
Q Consensus 224 ~~~~l~~---~~~g~~r~a~~~l~~~~~~~ 250 (364)
+++.+++ ..+||+|.|++.|+.+...+
T Consensus 257 ai~~~A~~vA~~~GD~R~Al~ilr~A~~~a 286 (318)
T 3te6_A 257 ITQLIAKNVANVSGSTEKAFKICEAAVEIS 286 (318)
T ss_dssp HHHHHHHHHHHHHCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCChHHHHHHHHHHHHHHH
Confidence 9999998 46899999999998776543
No 34
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.82 E-value=6.7e-20 Score=166.80 Aligned_cols=187 Identities=15% Similarity=0.233 Sum_probs=138.9
Q ss_pred CCCcchh-c--cHHHHHHHHHHHhcCC--CCcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCCCChHHHHHH
Q 017884 50 QSLADVA-A--HRDIVDTIDRLTSENR--LPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQ 124 (364)
Q Consensus 50 ~~~~~~v-g--~~~~~~~l~~~~~~~~--~~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (364)
.+|++++ | +......+..++.... .++++|+||||+|||++++++++.+... ...++.+++... ...+...
T Consensus 8 ~~f~~fv~g~~~~~a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~--~~~~~~i~~~~~--~~~~~~~ 83 (324)
T 1l8q_A 8 YTLENFIVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKR--GYRVIYSSADDF--AQAMVEH 83 (324)
T ss_dssp CCSSSCCCCTTTHHHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHT--TCCEEEEEHHHH--HHHHHHH
T ss_pred CCcccCCCCCcHHHHHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHC--CCEEEEEEHHHH--HHHHHHH
Confidence 3688887 4 5556667777777653 3569999999999999999999998544 345566654321 1111111
Q ss_pred HH-----HHHhcCccccCCccceEEEEEeCCCCCCH--HHHHHHHHHHHHhc-cCccEEEEeecc-c---cCchhhhccc
Q 017884 125 IQ-----DFASTQSFSFGVKASVKLVLLDEADAMTK--DAQFALRRVIEKYT-KNTRFALICNQV-N---KIIPALQSRC 192 (364)
Q Consensus 125 i~-----~~~~~~~~~~~~~~~~~viiiDe~~~l~~--~~~~~L~~~le~~~-~~~~~Il~~~~~-~---~l~~~l~sr~ 192 (364)
+. .+... + ..+.+++|||++.+.. ..++.++.+++... ....+|++++.. . .+.+.+.+|+
T Consensus 84 ~~~~~~~~~~~~----~---~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~ 156 (324)
T 1l8q_A 84 LKKGTINEFRNM----Y---KSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRF 156 (324)
T ss_dssp HHHTCHHHHHHH----H---HTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHH
T ss_pred HHcCcHHHHHHH----h---cCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcc
Confidence 11 11110 1 1367999999999986 67888888887654 345566666543 2 5788999998
Q ss_pred ---eEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Q 017884 193 ---TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMA 249 (364)
Q Consensus 193 ---~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~a~~~l~~~~~~ 249 (364)
.++.|+| +.++...++...+...++.++++++++|+..+ ||+|.+.+.++.+...
T Consensus 157 ~~~~~i~l~~-~~~e~~~il~~~~~~~~~~l~~~~l~~l~~~~-g~~r~l~~~l~~~~~~ 214 (324)
T 1l8q_A 157 EGGILVEIEL-DNKTRFKIIKEKLKEFNLELRKEVIDYLLENT-KNVREIEGKIKLIKLK 214 (324)
T ss_dssp HTSEEEECCC-CHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHC-SSHHHHHHHHHHHHHH
T ss_pred cCceEEEeCC-CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhC-CCHHHHHHHHHHHHHc
Confidence 7899999 99999999999999999999999999999999 9999999999887765
No 35
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.82 E-value=1.3e-18 Score=161.83 Aligned_cols=214 Identities=21% Similarity=0.328 Sum_probs=152.5
Q ss_pred CChhhccCCCCCcchhccHHHHHHHHHHHhc----CCCCcEEEeCCCCccHHHHHHHHHHHHcCCCC-CCcEEEEeCCCC
Q 017884 41 SPWVEKYRPQSLADVAAHRDIVDTIDRLTSE----NRLPHLLLYGPPGTGKTSTILAVARKLYGAQY-HNMILELNASDD 115 (364)
Q Consensus 41 ~~~~~~~~p~~~~~~vg~~~~~~~l~~~~~~----~~~~~lll~G~~G~GKt~la~~l~~~l~~~~~-~~~~~~~~~~~~ 115 (364)
.+|..+|.| ++++|++..+..+..++.. +...+++|+||+|+|||++++.+++.+..... ...++.+++...
T Consensus 11 ~~l~~~~~p---~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~ 87 (386)
T 2qby_A 11 EYLLPDYIP---DELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQI 87 (386)
T ss_dssp GGGSSSCCC---SCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHH
T ss_pred hhCCCccCC---CCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCC
Confidence 456667777 6789999999999988874 33445999999999999999999998743211 345566664321
Q ss_pred C----------------------ChHHHHHHHHHHHhcCccccCCccceEEEEEeCCCCCC----HHHHHHHHHHHHHh-
Q 017884 116 R----------------------GIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMT----KDAQFALRRVIEKY- 168 (364)
Q Consensus 116 ~----------------------~~~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~----~~~~~~L~~~le~~- 168 (364)
. ........+...... .+.+.+|+|||++.+. ......|++.++..
T Consensus 88 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~-------~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~ 160 (386)
T 2qby_A 88 DTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRD-------YGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVN 160 (386)
T ss_dssp CSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHT-------CCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCC
T ss_pred CCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhc-------cCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcC
Confidence 1 122222223332221 1137899999999986 34455566666542
Q ss_pred ccCccEEEEeecc---ccCchhhhccc--eEEEecCCChHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHcC---CCHHH
Q 017884 169 TKNTRFALICNQV---NKIIPALQSRC--TRFRFAPLEPVHVTERLKHVIEAE--GLDVTEGGLAALVRLCN---GDMRK 238 (364)
Q Consensus 169 ~~~~~~Il~~~~~---~~l~~~l~sr~--~~i~~~~~~~~~~~~~l~~~~~~~--~~~i~~~~~~~l~~~~~---g~~r~ 238 (364)
..++.+|++++.. ..+.+.+.+|+ ..+.|+|++.+++.+++...+... ...+++++++.+++.++ |++|.
T Consensus 161 ~~~~~~I~~~~~~~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~ 240 (386)
T 2qby_A 161 KSKISFIGITNDVKFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDARR 240 (386)
T ss_dssp C--EEEEEEESCGGGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCHHH
T ss_pred CCeEEEEEEECCCChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCHHH
Confidence 3456678888765 46777888998 689999999999999999987643 36789999999999998 99999
Q ss_pred HHHHHHHHHHhc-----ccCchHHHHHhcCC
Q 017884 239 ALNILQSTHMAS-----QQITEEAVYLCTGN 264 (364)
Q Consensus 239 a~~~l~~~~~~~-----~~i~~~~v~~~~~~ 264 (364)
+++.++.+...+ ..|+.+++..++..
T Consensus 241 ~~~ll~~a~~~a~~~~~~~i~~~~v~~a~~~ 271 (386)
T 2qby_A 241 ALDLLRVSGEIAERMKDTKVKEEYVYMAKEE 271 (386)
T ss_dssp HHHHHHHHHHHHHHTTCSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCccCHHHHHHHHHH
Confidence 999887765432 37899998877653
No 36
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.82 E-value=6.8e-19 Score=161.17 Aligned_cols=201 Identities=21% Similarity=0.303 Sum_probs=136.9
Q ss_pred hccCCCCCcchhccHHHHHHHHHHHhc-----------C-CCC-cEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEe
Q 017884 45 EKYRPQSLADVAAHRDIVDTIDRLTSE-----------N-RLP-HLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELN 111 (364)
Q Consensus 45 ~~~~p~~~~~~vg~~~~~~~l~~~~~~-----------~-~~~-~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~ 111 (364)
++....+|+++.|.+++++.|+..+.- | ..| .+|||||||||||.+|+++|.++ ...++.++
T Consensus 140 ~~~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~-----~~~f~~v~ 214 (405)
T 4b4t_J 140 EKVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHT-----DCKFIRVS 214 (405)
T ss_dssp ECSCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHH-----TCEEEEEE
T ss_pred cCCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhh-----CCCceEEE
Confidence 333446999999999999999887642 2 223 39999999999999999999997 56777777
Q ss_pred CCCCCC------hHHHHHHHHHHHhcCccccCCccceEEEEEeCCCCCCH--------------HHHHHHHHHHHHhc--
Q 017884 112 ASDDRG------IDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTK--------------DAQFALRRVIEKYT-- 169 (364)
Q Consensus 112 ~~~~~~------~~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~~--------------~~~~~L~~~le~~~-- 169 (364)
++.... ...++..+...... .+.||+|||+|.+.. .....|+..|+...
T Consensus 215 ~s~l~sk~vGese~~vr~lF~~Ar~~---------aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~ 285 (405)
T 4b4t_J 215 GAELVQKYIGEGSRMVRELFVMAREH---------APSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETS 285 (405)
T ss_dssp GGGGSCSSTTHHHHHHHHHHHHHHHT---------CSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCC
T ss_pred hHHhhccccchHHHHHHHHHHHHHHh---------CCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCC
Confidence 654321 12333333322221 368999999999852 12455666677543
Q ss_pred cCccEEEEeeccccCchhhhc--cc-eEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHH
Q 017884 170 KNTRFALICNQVNKIIPALQS--RC-TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNG-DMRKALNILQS 245 (364)
Q Consensus 170 ~~~~~Il~~~~~~~l~~~l~s--r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g-~~r~a~~~l~~ 245 (364)
.++.+|.+||.++.+++++.+ |+ ..++|+.|+.++..++++.++++.++. ++-.++.|++.+.| +...+.+++..
T Consensus 286 ~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~-~dvdl~~lA~~t~G~SGADi~~l~~e 364 (405)
T 4b4t_J 286 KNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLT-RGINLRKVAEKMNGCSGADVKGVCTE 364 (405)
T ss_dssp CCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCC-SSCCHHHHHHHCCSCCHHHHHHHHHH
T ss_pred CCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCC-ccCCHHHHHHHCCCCCHHHHHHHHHH
Confidence 345678889999999999988 77 789999999999999998887654432 12247888988865 33333333333
Q ss_pred HHHh-----cccCchHHHHH
Q 017884 246 THMA-----SQQITEEAVYL 260 (364)
Q Consensus 246 ~~~~-----~~~i~~~~v~~ 260 (364)
++.. ...|+.+++..
T Consensus 365 A~~~Air~~~~~vt~~Df~~ 384 (405)
T 4b4t_J 365 AGMYALRERRIHVTQEDFEL 384 (405)
T ss_dssp HHHHHHHTTCSBCCHHHHHH
T ss_pred HHHHHHHcCCCCcCHHHHHH
Confidence 3221 13566555543
No 37
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.82 E-value=1.4e-19 Score=163.40 Aligned_cols=208 Identities=19% Similarity=0.271 Sum_probs=144.7
Q ss_pred cchhccHHHHHHHHHHHhc--------------CCCCcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCCCC-
Q 017884 53 ADVAAHRDIVDTIDRLTSE--------------NRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRG- 117 (364)
Q Consensus 53 ~~~vg~~~~~~~l~~~~~~--------------~~~~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~- 117 (364)
++++|++.++..+...+.. ....+++|+||||+|||++|+++++.+. ..++.+++.....
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~-----~~~~~i~~~~~~~~ 89 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLAN-----APFIKVEATKFTEV 89 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHT-----CCEEEEEGGGGSSC
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhC-----CCEEEEcchhcccC
Confidence 3589999999998887754 2345599999999999999999999983 3456666543211
Q ss_pred --h-HHHHHHHHHHHhcCccccCCccceEEEEEeCCCCCCHHH------------HHHHHHHHHHh----------ccCc
Q 017884 118 --I-DVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDA------------QFALRRVIEKY----------TKNT 172 (364)
Q Consensus 118 --~-~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~------------~~~L~~~le~~----------~~~~ 172 (364)
. ......+.......+..+.....+.+|+|||+|.+.... ++.|+.++++. ...+
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~ 169 (310)
T 1ofh_A 90 GYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHI 169 (310)
T ss_dssp CSGGGSTTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTC
T ss_pred CccCccHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCccccccccchhHHHHHHHHHHHhcCCeEecccccccCCcE
Confidence 0 000111222221111001100136799999999997544 88999999964 2345
Q ss_pred cEEEEe----eccccCchhhhccc-eEEEecCCChHHHHHHHHH-----------HHHHcC--CCCCHHHHHHHHHHc--
Q 017884 173 RFALIC----NQVNKIIPALQSRC-TRFRFAPLEPVHVTERLKH-----------VIEAEG--LDVTEGGLAALVRLC-- 232 (364)
Q Consensus 173 ~~Il~~----~~~~~l~~~l~sr~-~~i~~~~~~~~~~~~~l~~-----------~~~~~~--~~i~~~~~~~l~~~~-- 232 (364)
.+|+++ +.+..+.+++.+|| ..+.|++|+.+++.+++.. .+...+ +.+++++++.|++++
T Consensus 170 ~~i~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~ 249 (310)
T 1ofh_A 170 LFIASGAFQVARPSDLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFR 249 (310)
T ss_dssp EEEEEECCSSSCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHHTTCEEEECHHHHHHHHHHHHH
T ss_pred EEEEcCCcccCCcccCCHHHHhhCCceEEcCCcCHHHHHHHHHhhHHHHHHHHHHHHHhcCCeeccCHHHHHHHHHHhhh
Confidence 566664 35667889999999 5699999999999999882 233344 368999999999998
Q ss_pred ------CCCHHHHHHHHHHHHHh-----c---c---cCchHHHHHhcCCC
Q 017884 233 ------NGDMRKALNILQSTHMA-----S---Q---QITEEAVYLCTGNP 265 (364)
Q Consensus 233 ------~g~~r~a~~~l~~~~~~-----~---~---~i~~~~v~~~~~~~ 265 (364)
+||+|.+.+.++.+... . + .|+.++|..++...
T Consensus 250 ~~~~~~~g~~R~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~v~~~l~~~ 299 (310)
T 1ofh_A 250 VNEKTENIGARRLHTVMERLMDKISFSASDMNGQTVNIDAAYVADALGEV 299 (310)
T ss_dssp HHHHSCCCTTHHHHHHHHHHSHHHHHHGGGCTTCEEEECHHHHHHHTCSS
T ss_pred hcccccccCcHHHHHHHHHHHHhhhcCCccccCCEEEEeeHHHHHHHHhh
Confidence 79999999999876521 1 1 38888888877643
No 38
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.82 E-value=1.4e-18 Score=157.63 Aligned_cols=190 Identities=18% Similarity=0.198 Sum_probs=139.9
Q ss_pred hccCCCCCcchhccHHHHHHHHHHHhc-----------CCC-CcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeC
Q 017884 45 EKYRPQSLADVAAHRDIVDTIDRLTSE-----------NRL-PHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNA 112 (364)
Q Consensus 45 ~~~~p~~~~~~vg~~~~~~~l~~~~~~-----------~~~-~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~ 112 (364)
.++.+.+|++++|++.+++.|+..+.. ... .+++||||||+|||++|+++++.+. ...++.+++
T Consensus 4 ~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~----~~~~~~i~~ 79 (322)
T 1xwi_A 4 IERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN----NSTFFSISS 79 (322)
T ss_dssp EECCCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTT----SCEEEEEEC
T ss_pred ecCCCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcC----CCcEEEEEh
Confidence 345677999999999999999887741 122 3499999999999999999999962 345666666
Q ss_pred CCCC------ChHHHHHHHHHHHhcCccccCCccceEEEEEeCCCCCC-----------HHHHHHHHHHHHHh---ccCc
Q 017884 113 SDDR------GIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMT-----------KDAQFALRRVIEKY---TKNT 172 (364)
Q Consensus 113 ~~~~------~~~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~-----------~~~~~~L~~~le~~---~~~~ 172 (364)
+... ....++..+...... .+.+|+|||+|.+. ....+.|+..++.. ...+
T Consensus 80 ~~l~~~~~g~~~~~~~~lf~~a~~~---------~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v 150 (322)
T 1xwi_A 80 SDLVSKWLGESEKLVKNLFQLAREN---------KPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGI 150 (322)
T ss_dssp CSSCCSSCCSCHHHHHHHHHHHHHT---------SSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTE
T ss_pred HHHHhhhhhHHHHHHHHHHHHHHhc---------CCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCE
Confidence 5421 222333333222211 36799999999983 23456677777753 3456
Q ss_pred cEEEEeeccccCchhhhccc-eEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC-HHHHHHHHHHHH
Q 017884 173 RFALICNQVNKIIPALQSRC-TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGD-MRKALNILQSTH 247 (364)
Q Consensus 173 ~~Il~~~~~~~l~~~l~sr~-~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~-~r~a~~~l~~~~ 247 (364)
.+|.+||.++.+++++++|+ ..+.+++|+.++..+++...+...+..+++..++.|++.+.|- .+.+..+++.++
T Consensus 151 ~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~A~ 227 (322)
T 1xwi_A 151 LVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDAL 227 (322)
T ss_dssp EEEEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHHHHHTCTTCCHHHHHHHHHHHH
T ss_pred EEEEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 67778899999999999999 7899999999999999999988878788999999999999875 444444444433
No 39
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.81 E-value=1.7e-19 Score=164.68 Aligned_cols=211 Identities=15% Similarity=0.155 Sum_probs=149.1
Q ss_pred CChhhccCCCCCcchhccHHHHHHHHHHHhcCCCCcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCCCChHH
Q 017884 41 SPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDV 120 (364)
Q Consensus 41 ~~~~~~~~p~~~~~~vg~~~~~~~l~~~~~~~~~~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 120 (364)
.+|.++++|..+++++|++.++..+...+..+ .+++|+||||+|||++++++++.+. ..+..+++........
T Consensus 15 ~~~~~~~~~~~~~~i~g~~~~~~~l~~~l~~~--~~vll~G~pGtGKT~la~~la~~~~-----~~~~~i~~~~~~~~~~ 87 (331)
T 2r44_A 15 RNKIKEVIDEVGKVVVGQKYMINRLLIGICTG--GHILLEGVPGLAKTLSVNTLAKTMD-----LDFHRIQFTPDLLPSD 87 (331)
T ss_dssp HHHHHHHHHHHTTTCCSCHHHHHHHHHHHHHT--CCEEEESCCCHHHHHHHHHHHHHTT-----CCEEEEECCTTCCHHH
T ss_pred HHHHHHHHHHhccceeCcHHHHHHHHHHHHcC--CeEEEECCCCCcHHHHHHHHHHHhC-----CCeEEEecCCCCChhh
Confidence 36999999999999999999999998888775 4799999999999999999999873 3345555543222221
Q ss_pred HHHHHHHHHhc---CccccCC-ccceEEEEEeCCCCCCHHHHHHHHHHHHHh-----------ccCccEEEEeeccc---
Q 017884 121 VRQQIQDFAST---QSFSFGV-KASVKLVLLDEADAMTKDAQFALRRVIEKY-----------TKNTRFALICNQVN--- 182 (364)
Q Consensus 121 ~~~~i~~~~~~---~~~~~~~-~~~~~viiiDe~~~l~~~~~~~L~~~le~~-----------~~~~~~Il~~~~~~--- 182 (364)
+ +...... ..+.+.. .-...+++|||++.+....++.|+..|++. +..+.+|.++|...
T Consensus 88 l---~g~~~~~~~~~~~~~~~g~l~~~vl~iDEi~~~~~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat~np~~~~~ 164 (331)
T 2r44_A 88 L---IGTMIYNQHKGNFEVKKGPVFSNFILADEVNRSPAKVQSALLECMQEKQVTIGDTTYPLDNPFLVLATQNPVEQEG 164 (331)
T ss_dssp H---HEEEEEETTTTEEEEEECTTCSSEEEEETGGGSCHHHHHHHHHHHHHSEEEETTEEEECCSSCEEEEEECTTCCSC
T ss_pred c---CCceeecCCCCceEeccCcccccEEEEEccccCCHHHHHHHHHHHhcCceeeCCEEEECCCCEEEEEecCCCcccC
Confidence 1 1100000 0000000 001369999999999999999999999974 33344444445322
Q ss_pred --cCchhhhccce-EEEecCCChHHHHHHHHHHHHH----------------------cCCCCCHHHHHHHHHHc-----
Q 017884 183 --KIIPALQSRCT-RFRFAPLEPVHVTERLKHVIEA----------------------EGLDVTEGGLAALVRLC----- 232 (364)
Q Consensus 183 --~l~~~l~sr~~-~i~~~~~~~~~~~~~l~~~~~~----------------------~~~~i~~~~~~~l~~~~----- 232 (364)
.+.+++.+||. .+.+++|+.++..+++...+.. .++.+++++++++++.+
T Consensus 165 ~~~l~~~l~~Rf~~~i~i~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~~i~~~~~~~r~ 244 (331)
T 2r44_A 165 TYPLPEAQVDRFMMKIHLTYLDKESELEVMRRVSNMNFNYQVQKIVSKNDVLEIRNEINKVTISESLEKYIIELVFATRF 244 (331)
T ss_dssp CCCCCHHHHTTSSEEEECCCCCHHHHHHHHHHHHCTTCCCCCCCCSCHHHHHHHHHHHHTCBCCHHHHHHHHHHHHHHHS
T ss_pred cccCCHHHHhheeEEEEcCCCCHHHHHHHHHhccccCcchhccccCCHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhc
Confidence 37899999996 5999999999999999887654 26778999999998764
Q ss_pred CC---------------CHHHHHHHHHHHHHhc-----ccCchHHHHHh
Q 017884 233 NG---------------DMRKALNILQSTHMAS-----QQITEEAVYLC 261 (364)
Q Consensus 233 ~g---------------~~r~a~~~l~~~~~~~-----~~i~~~~v~~~ 261 (364)
.+ ++|.++++++.+...+ ..++.++|..+
T Consensus 245 ~~~~~~~~~~~~~~~~~s~R~~~~ll~~a~a~A~l~g~~~v~~~dv~~~ 293 (331)
T 2r44_A 245 PAEYGLEAEASYILYGASTRAAINLNRVAKAMAFFNNRDYVLPEDIKEV 293 (331)
T ss_dssp GGGGTCHHHHHHEEECCCHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHH
T ss_pred cccccccccccccccCcChhHHHHHHHHHHHHHHHcCCCCCCHHHHHHH
Confidence 22 6999988887654322 24666666543
No 40
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.81 E-value=5.2e-18 Score=149.43 Aligned_cols=186 Identities=20% Similarity=0.189 Sum_probs=127.5
Q ss_pred CCCCcchhccHHHHHHHHHHHhc------------CCCCcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCCC
Q 017884 49 PQSLADVAAHRDIVDTIDRLTSE------------NRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDR 116 (364)
Q Consensus 49 p~~~~~~vg~~~~~~~l~~~~~~------------~~~~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~ 116 (364)
+.+|++++|++.+++.+++++.. ....+++|+||||+|||++|+++++.+ ...++.+++....
T Consensus 2 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~-----~~~~~~~~~~~~~ 76 (262)
T 2qz4_A 2 GVSFKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEA-----QVPFLAMAGAEFV 76 (262)
T ss_dssp CCCTTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHH-----TCCEEEEETTTTS
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHh-----CCCEEEechHHHH
Confidence 35799999999999988777642 223348999999999999999999997 3456667665432
Q ss_pred C------hHHHHHHHHHHHhcCccccCCccceEEEEEeCCCCCCH------------HHHHHHHHHHHH-----hccCcc
Q 017884 117 G------IDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTK------------DAQFALRRVIEK-----YTKNTR 173 (364)
Q Consensus 117 ~------~~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~~------------~~~~~L~~~le~-----~~~~~~ 173 (364)
. ...+...+...... .+.+|+|||+|.+.. ..+..+..+++. .+..+.
T Consensus 77 ~~~~~~~~~~~~~~~~~a~~~---------~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~ 147 (262)
T 2qz4_A 77 EVIGGLGAARVRSLFKEARAR---------APCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVI 147 (262)
T ss_dssp SSSTTHHHHHHHHHHHHHHHT---------CSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEE
T ss_pred hhccChhHHHHHHHHHHHHhc---------CCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEE
Confidence 1 11222222222111 367999999999932 223344444443 233567
Q ss_pred EEEEeeccccCchhhhc--cc-eEEEecCCChHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHcCCC-HHHHHHHHHHHHH
Q 017884 174 FALICNQVNKIIPALQS--RC-TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGG-LAALVRLCNGD-MRKALNILQSTHM 248 (364)
Q Consensus 174 ~Il~~~~~~~l~~~l~s--r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~-~~~l~~~~~g~-~r~a~~~l~~~~~ 248 (364)
+|.++|.+..+++++.+ |+ ..+.|++|+.++..+++...+...+...+.+. ...++..+.|. .+.+.++++.+..
T Consensus 148 vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l~~~a~~ 227 (262)
T 2qz4_A 148 VLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAAL 227 (262)
T ss_dssp EEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHHHHHHHHHHHT
T ss_pred EEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHHHHHHHHHHHH
Confidence 78888888888899988 88 78999999999999999999998888777664 57888888764 4455566665543
No 41
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.81 E-value=7.7e-19 Score=166.08 Aligned_cols=194 Identities=18% Similarity=0.194 Sum_probs=141.4
Q ss_pred CChhhccCCCCCcchhccHHHHHHHHHHHhc-----------C-CCCcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEE
Q 017884 41 SPWVEKYRPQSLADVAAHRDIVDTIDRLTSE-----------N-RLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMIL 108 (364)
Q Consensus 41 ~~~~~~~~p~~~~~~vg~~~~~~~l~~~~~~-----------~-~~~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~ 108 (364)
..+..++.+.+|++++|++.++..|...+.. . ...+++|+||||+|||++|+++++.+. ...++
T Consensus 122 ~~i~~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~----~~~~~ 197 (444)
T 2zan_A 122 GAIVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN----NSTFF 197 (444)
T ss_dssp --CBCCCCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCC----SSEEE
T ss_pred cceeccCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcC----CCCEE
Confidence 3456678889999999999999999988731 1 223499999999999999999999962 34556
Q ss_pred EEeCCCCCC------hHHHHHHHHHHHhcCccccCCccceEEEEEeCCCCCC-----------HHHHHHHHHHHHHh---
Q 017884 109 ELNASDDRG------IDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMT-----------KDAQFALRRVIEKY--- 168 (364)
Q Consensus 109 ~~~~~~~~~------~~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~-----------~~~~~~L~~~le~~--- 168 (364)
.++++.... ...++..+...... .+.||+|||+|.+. ....+.|+..++..
T Consensus 198 ~v~~~~l~~~~~g~~~~~~~~~f~~a~~~---------~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~ 268 (444)
T 2zan_A 198 SISSSDLVSKWLGESEKLVKNLFQLAREN---------KPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVD 268 (444)
T ss_dssp EECCC---------CCCTHHHHHHHHHHS---------CSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCC
T ss_pred EEeHHHHHhhhcchHHHHHHHHHHHHHHc---------CCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccC
Confidence 666554211 11223322222111 36899999999983 23456677766653
Q ss_pred ccCccEEEEeeccccCchhhhccc-eEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHH
Q 017884 169 TKNTRFALICNQVNKIIPALQSRC-TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNG-DMRKALNILQST 246 (364)
Q Consensus 169 ~~~~~~Il~~~~~~~l~~~l~sr~-~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g-~~r~a~~~l~~~ 246 (364)
+.++.+|.+||.+..+++++.+|| ..+.++.|+.++...++...+...+..+++..++.|+..+.| +.+.+..+++.+
T Consensus 269 ~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~a 348 (444)
T 2zan_A 269 NDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISIIVRDA 348 (444)
T ss_dssp CSSCEEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEECCHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred CCCEEEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 456778888999999999999999 689999999999999999988877777899999999999988 444555555444
Q ss_pred H
Q 017884 247 H 247 (364)
Q Consensus 247 ~ 247 (364)
.
T Consensus 349 ~ 349 (444)
T 2zan_A 349 L 349 (444)
T ss_dssp H
T ss_pred H
Confidence 3
No 42
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.80 E-value=1.6e-18 Score=154.75 Aligned_cols=206 Identities=18% Similarity=0.235 Sum_probs=140.1
Q ss_pred ccCCCCCcchhccHHHHHHHHHHHhc-------------CCCCcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeC
Q 017884 46 KYRPQSLADVAAHRDIVDTIDRLTSE-------------NRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNA 112 (364)
Q Consensus 46 ~~~p~~~~~~vg~~~~~~~l~~~~~~-------------~~~~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~ 112 (364)
...+.+|++++|++.+++.+...+.. ....+++|+||||+|||++++++++.+ ...++.+++
T Consensus 10 ~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~-----~~~~~~v~~ 84 (285)
T 3h4m_A 10 ERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATET-----NATFIRVVG 84 (285)
T ss_dssp SSCCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHT-----TCEEEEEEG
T ss_pred CCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHh-----CCCEEEEeh
Confidence 34456899999999999999888753 233459999999999999999999997 445666655
Q ss_pred CCCC--ChHHHHHHHHHHHhcCccccCCccceEEEEEeCCCCC-----------CHHHHHHHHHHHHHh-----ccCccE
Q 017884 113 SDDR--GIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAM-----------TKDAQFALRRVIEKY-----TKNTRF 174 (364)
Q Consensus 113 ~~~~--~~~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l-----------~~~~~~~L~~~le~~-----~~~~~~ 174 (364)
.... ........+........ ...+.+|+|||+|.+ ....+..+..+++.. ..++.+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~v 159 (285)
T 3h4m_A 85 SELVKKFIGEGASLVKDIFKLAK-----EKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKI 159 (285)
T ss_dssp GGGCCCSTTHHHHHHHHHHHHHH-----HTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEE
T ss_pred HHHHHhccchHHHHHHHHHHHHH-----HcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEE
Confidence 4321 11111222222111100 013579999999988 345566777766653 235678
Q ss_pred EEEeeccccCchhhhc--cc-eEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHHhc
Q 017884 175 ALICNQVNKIIPALQS--RC-TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNG-DMRKALNILQSTHMAS 250 (364)
Q Consensus 175 Il~~~~~~~l~~~l~s--r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g-~~r~a~~~l~~~~~~~ 250 (364)
|+++|.+..+.+.+.+ |+ ..+.|++|+.++..+++...+...+.. ++..+..++..+.| +.+.+..++..+...+
T Consensus 160 I~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~l~~~~~g~~~~~i~~l~~~a~~~a 238 (285)
T 3h4m_A 160 IGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLA-EDVNLEEIAKMTEGCVGAELKAICTEAGMNA 238 (285)
T ss_dssp EEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBC-TTCCHHHHHHHCTTCCHHHHHHHHHHHHHHH
T ss_pred EEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCC-CcCCHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 8888989999999988 77 679999999999999999887765543 23346778888866 4555555554443322
Q ss_pred -----ccCchHHHHHhc
Q 017884 251 -----QQITEEAVYLCT 262 (364)
Q Consensus 251 -----~~i~~~~v~~~~ 262 (364)
..|+.+++..++
T Consensus 239 ~~~~~~~I~~~d~~~al 255 (285)
T 3h4m_A 239 IRELRDYVTMDDFRKAV 255 (285)
T ss_dssp HHTTCSSBCHHHHHHHH
T ss_pred HHhccCcCCHHHHHHHH
Confidence 357777776544
No 43
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.80 E-value=4.5e-18 Score=156.13 Aligned_cols=204 Identities=21% Similarity=0.286 Sum_probs=137.3
Q ss_pred ChhhccCCCCCcchhccHHHHHHHHHHHhc-----------C-CCC-cEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEE
Q 017884 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSE-----------N-RLP-HLLLYGPPGTGKTSTILAVARKLYGAQYHNMIL 108 (364)
Q Consensus 42 ~~~~~~~p~~~~~~vg~~~~~~~l~~~~~~-----------~-~~~-~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~ 108 (364)
+-.++-...+|+++.|.+++++.|+..+.. + ..| .+|||||||||||++|+++|.++ ...++
T Consensus 171 ~~~~~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~-----~~~fi 245 (437)
T 4b4t_I 171 MKMDKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQT-----SATFL 245 (437)
T ss_dssp CEEESSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHH-----TCEEE
T ss_pred eeeccCCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHh-----CCCEE
Confidence 344555557999999999999999887641 2 223 39999999999999999999997 56777
Q ss_pred EEeCCCCC----C--hHHHHHHHHHHHhcCccccCCccceEEEEEeCCCCCCH--------------HHHHHHHHHHHHh
Q 017884 109 ELNASDDR----G--IDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTK--------------DAQFALRRVIEKY 168 (364)
Q Consensus 109 ~~~~~~~~----~--~~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~~--------------~~~~~L~~~le~~ 168 (364)
.++++... + ...++..+...... .+.||+|||+|.+.. .....|+..|+..
T Consensus 246 ~v~~s~l~sk~vGesek~ir~lF~~Ar~~---------aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~ 316 (437)
T 4b4t_I 246 RIVGSELIQKYLGDGPRLCRQIFKVAGEN---------APSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGF 316 (437)
T ss_dssp EEESGGGCCSSSSHHHHHHHHHHHHHHHT---------CSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHC
T ss_pred EEEHHHhhhccCchHHHHHHHHHHHHHhc---------CCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCc
Confidence 77765432 1 11233333322221 368999999998842 1234566666654
Q ss_pred c--cCccEEEEeeccccCchhhhc--cc-eEEEecCCChHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-CHHHHHH
Q 017884 169 T--KNTRFALICNQVNKIIPALQS--RC-TRFRFAPLEPVHVTERLKHVIEAEGLDVTEG-GLAALVRLCNG-DMRKALN 241 (364)
Q Consensus 169 ~--~~~~~Il~~~~~~~l~~~l~s--r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~-~~~~l~~~~~g-~~r~a~~ 241 (364)
. .++.+|.+||.++.+++++.+ |+ ..++|+.|+.++..++++.++++.. ++++ .++.|++.+.| +...+.+
T Consensus 317 ~~~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~--l~~dvdl~~LA~~T~GfSGADI~~ 394 (437)
T 4b4t_I 317 DDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMN--LSEDVNLETLVTTKDDLSGADIQA 394 (437)
T ss_dssp CCSSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSC--BCSCCCHHHHHHHCCSCCHHHHHH
T ss_pred CCCCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCC--CCCcCCHHHHHHhCCCCCHHHHHH
Confidence 3 345688889999999999998 77 6799999999999999988876544 3332 37888888765 3333333
Q ss_pred HHHHHHHh-----cccCchHHHHHh
Q 017884 242 ILQSTHMA-----SQQITEEAVYLC 261 (364)
Q Consensus 242 ~l~~~~~~-----~~~i~~~~v~~~ 261 (364)
++..++.. ...|+.+++..+
T Consensus 395 l~~eA~~~Air~~~~~It~eDf~~A 419 (437)
T 4b4t_I 395 MCTEAGLLALRERRMQVTAEDFKQA 419 (437)
T ss_dssp HHHHHHHHHHHTTCSCBCHHHHHHH
T ss_pred HHHHHHHHHHHcCCCccCHHHHHHH
Confidence 33333221 135666655443
No 44
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.79 E-value=7.1e-18 Score=156.87 Aligned_cols=199 Identities=19% Similarity=0.250 Sum_probs=134.9
Q ss_pred CCCCCcchhccHHHHHHHHHHHhc-----------C-CCC-cEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCC
Q 017884 48 RPQSLADVAAHRDIVDTIDRLTSE-----------N-RLP-HLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASD 114 (364)
Q Consensus 48 ~p~~~~~~vg~~~~~~~l~~~~~~-----------~-~~~-~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~ 114 (364)
...+|+++.|.+++++.|+..+.. | .+| .+|||||||||||++|+++|+++ +..++.++++.
T Consensus 176 p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~-----~~~~~~v~~s~ 250 (437)
T 4b4t_L 176 GEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATI-----GANFIFSPASG 250 (437)
T ss_dssp CSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHH-----TCEEEEEEGGG
T ss_pred CCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHh-----CCCEEEEehhh
Confidence 345899999999999998887642 2 223 39999999999999999999998 56677777654
Q ss_pred CC----Ch--HHHHHHHHHHHhcCccccCCccceEEEEEeCCCCCCH--------------HHHHHHHHHHHHhc--cCc
Q 017884 115 DR----GI--DVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTK--------------DAQFALRRVIEKYT--KNT 172 (364)
Q Consensus 115 ~~----~~--~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~~--------------~~~~~L~~~le~~~--~~~ 172 (364)
.. +. ..++..+...... .+.||+|||+|.+.. .....|+..|+... .++
T Consensus 251 l~sk~~Gese~~ir~~F~~A~~~---------~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~v 321 (437)
T 4b4t_L 251 IVDKYIGESARIIREMFAYAKEH---------EPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQT 321 (437)
T ss_dssp TCCSSSSHHHHHHHHHHHHHHHS---------CSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSS
T ss_pred hccccchHHHHHHHHHHHHHHhc---------CCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCe
Confidence 32 11 1222222222211 478999999998841 12456777777544 346
Q ss_pred cEEEEeeccccCchhhhcc--c-eEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHH
Q 017884 173 RFALICNQVNKIIPALQSR--C-TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNG-DMRKALNILQSTHM 248 (364)
Q Consensus 173 ~~Il~~~~~~~l~~~l~sr--~-~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g-~~r~a~~~l~~~~~ 248 (364)
.+|++||.++.+++++.++ + ..++|+.|+.++..++++.++.+.... ++-.++.|++.+.| +...+.+++..++.
T Consensus 322 ivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~-~d~dl~~lA~~t~G~sGADi~~l~~eA~~ 400 (437)
T 4b4t_L 322 KIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKT-GEFDFEAAVKMSDGFNGADIRNCATEAGF 400 (437)
T ss_dssp EEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBC-SCCCHHHHHHTCCSCCHHHHHHHHHHHHH
T ss_pred EEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCC-cccCHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 7888999999999999886 4 579999999999999999888765432 22236788888765 33333333333222
Q ss_pred h-----cccCchHHHHHh
Q 017884 249 A-----SQQITEEAVYLC 261 (364)
Q Consensus 249 ~-----~~~i~~~~v~~~ 261 (364)
. ...|+.+++..+
T Consensus 401 ~air~~~~~i~~~d~~~A 418 (437)
T 4b4t_L 401 FAIRDDRDHINPDDLMKA 418 (437)
T ss_dssp HHHHTTCSSBCHHHHHHH
T ss_pred HHHHcCCCCCCHHHHHHH
Confidence 1 235666655443
No 45
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.79 E-value=2.7e-18 Score=159.54 Aligned_cols=204 Identities=20% Similarity=0.278 Sum_probs=136.8
Q ss_pred hccCCCCCcchhccHHHHHHHHHHHh-----------cC-CCC-cEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEe
Q 017884 45 EKYRPQSLADVAAHRDIVDTIDRLTS-----------EN-RLP-HLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELN 111 (364)
Q Consensus 45 ~~~~p~~~~~~vg~~~~~~~l~~~~~-----------~~-~~~-~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~ 111 (364)
++-.+.+|+++.|.+++++.|+..+. .| ..| .+|||||||||||++|+++|.++ +..++.++
T Consensus 173 ~~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~-----~~~f~~v~ 247 (434)
T 4b4t_M 173 DEKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQT-----NATFLKLA 247 (434)
T ss_dssp ESSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHH-----TCEEEEEE
T ss_pred CCCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHh-----CCCEEEEe
Confidence 33345689999999999999887653 12 223 39999999999999999999998 56777777
Q ss_pred CCCCC----C--hHHHHHHHHHHHhcCccccCCccceEEEEEeCCCCCCH-----------H---HHHHHHHHHHHhcc-
Q 017884 112 ASDDR----G--IDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTK-----------D---AQFALRRVIEKYTK- 170 (364)
Q Consensus 112 ~~~~~----~--~~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~~-----------~---~~~~L~~~le~~~~- 170 (364)
++... + ...++..+...... .+.||+|||+|.+.. . ....|+..|+....
T Consensus 248 ~s~l~~~~vGese~~ir~lF~~A~~~---------aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~ 318 (434)
T 4b4t_M 248 APQLVQMYIGEGAKLVRDAFALAKEK---------APTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSD 318 (434)
T ss_dssp GGGGCSSCSSHHHHHHHHHHHHHHHH---------CSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSS
T ss_pred hhhhhhcccchHHHHHHHHHHHHHhc---------CCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCC
Confidence 65432 1 12233333222221 368999999998731 1 23456666665433
Q ss_pred -CccEEEEeeccccCchhhhc--cc-eEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHH
Q 017884 171 -NTRFALICNQVNKIIPALQS--RC-TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNG-DMRKALNILQS 245 (364)
Q Consensus 171 -~~~~Il~~~~~~~l~~~l~s--r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g-~~r~a~~~l~~ 245 (364)
++.+|.+||.++.+++++.+ |+ ..++|+.|+.++..++++.++++.... ++-.++.|++.+.| +...+.+++..
T Consensus 319 ~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~-~dvdl~~lA~~t~G~sGADi~~l~~e 397 (434)
T 4b4t_M 319 DRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTD-DDINWQELARSTDEFNGAQLKAVTVE 397 (434)
T ss_dssp CSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBC-SCCCHHHHHHHCSSCCHHHHHHHHHH
T ss_pred CCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCC-CcCCHHHHHHhCCCCCHHHHHHHHHH
Confidence 45677788999999999988 77 679999999999999999888765432 11236788888765 33333333333
Q ss_pred HHH-----hcccCchHHHHHhcC
Q 017884 246 THM-----ASQQITEEAVYLCTG 263 (364)
Q Consensus 246 ~~~-----~~~~i~~~~v~~~~~ 263 (364)
++. ....|+.+++..++.
T Consensus 398 A~~~a~r~~~~~i~~~Df~~Al~ 420 (434)
T 4b4t_M 398 AGMIALRNGQSSVKHEDFVEGIS 420 (434)
T ss_dssp HHHHHHHHTCSSBCHHHHHHHHH
T ss_pred HHHHHHHcCCCCcCHHHHHHHHH
Confidence 222 224677777665543
No 46
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.78 E-value=1.6e-18 Score=164.97 Aligned_cols=195 Identities=16% Similarity=0.236 Sum_probs=142.1
Q ss_pred CCCChhhccCCCCCcchhccHHHHHHHHHHHhcCCCCcEEEeCCCCccHHHHHHHHHHHHcCCC-----CCCcEEEEeCC
Q 017884 39 KASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ-----YHNMILELNAS 113 (364)
Q Consensus 39 ~~~~~~~~~~p~~~~~~vg~~~~~~~l~~~~~~~~~~~lll~G~~G~GKt~la~~l~~~l~~~~-----~~~~~~~~~~~ 113 (364)
...+|.++|+|..|++++|++..+..+...+.....++++|+||||+|||++++.+++.+.+.. ....++.+++.
T Consensus 166 ~~~~l~~~~r~~~ld~iiGr~~~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~ 245 (468)
T 3pxg_A 166 LARDLTAIAKEDSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG 245 (468)
T ss_dssp SCCBHHHHTTSSCSCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC---
T ss_pred HHHHHHHHHhcCCCCCccCcHHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC
Confidence 4568999999999999999999999999999888888899999999999999999999986532 13345555543
Q ss_pred CC-CC--hHHHHHHHHHHHhcCccccCCccceEEEEEeCCCCCCHHHHHHHHHHHHHhccCccEEEEeeccc-----cCc
Q 017884 114 DD-RG--IDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVN-----KII 185 (364)
Q Consensus 114 ~~-~~--~~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~-----~l~ 185 (364)
.. .+ ...++..+...... ++.+++|| ...+.++.|+..|+. ..+++|.+++... .++
T Consensus 246 ~~~~g~~e~~~~~~~~~~~~~---------~~~iLfiD----~~~~a~~~L~~~L~~--g~v~vI~at~~~e~~~~~~~~ 310 (468)
T 3pxg_A 246 TKYRGEFEDRLKKVMDEIRQA---------GNIILFID----AAIDASNILKPSLAR--GELQCIGATTLDEYRKYIEKD 310 (468)
T ss_dssp -------CTTHHHHHHHHHTC---------CCCEEEEC----C--------CCCTTS--SSCEEEEECCTTTTHHHHTTC
T ss_pred ccccchHHHHHHHHHHHHHhc---------CCeEEEEe----CchhHHHHHHHhhcC--CCEEEEecCCHHHHHHHhhcC
Confidence 11 01 12233333333221 36799999 444567778777763 3677888887665 578
Q ss_pred hhhhccceEEEecCCChHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCC------CHHHHHHHHHHHHH
Q 017884 186 PALQSRCTRFRFAPLEPVHVTERLKHVIEA----EGLDVTEGGLAALVRLCNG------DMRKALNILQSTHM 248 (364)
Q Consensus 186 ~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~----~~~~i~~~~~~~l~~~~~g------~~r~a~~~l~~~~~ 248 (364)
+++.+||.++.|++|+.++...++...+.+ .++.++++++..++.++.+ -++.++++++..+.
T Consensus 311 ~al~~Rf~~i~v~~p~~e~~~~iL~~~~~~~~~~~~~~i~~~al~~l~~~s~~~~~~~~lp~~ai~ll~~a~~ 383 (468)
T 3pxg_A 311 AALERRFQPIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAIDLIDEAGS 383 (468)
T ss_dssp SHHHHSEEEEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHHHHHHHHH
T ss_pred HHHHHhCccceeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhccCcCCcHHHHHHHHHHH
Confidence 999999999999999999999999988766 6889999999999988743 36689988876653
No 47
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.78 E-value=9.6e-18 Score=155.45 Aligned_cols=170 Identities=22% Similarity=0.374 Sum_probs=121.5
Q ss_pred CCCcchhccHHHHHHHHHHHhc-----------C-CCCc-EEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCCC
Q 017884 50 QSLADVAAHRDIVDTIDRLTSE-----------N-RLPH-LLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDR 116 (364)
Q Consensus 50 ~~~~~~vg~~~~~~~l~~~~~~-----------~-~~~~-lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~ 116 (364)
.+|+++.|.+++++.|+..+.- | ..|. +|||||||||||++|+++|+++ ...++.++++...
T Consensus 206 vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~-----~~~fi~vs~s~L~ 280 (467)
T 4b4t_H 206 VTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRT-----DATFIRVIGSELV 280 (467)
T ss_dssp CCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHH-----TCEEEEEEGGGGC
T ss_pred CCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhcc-----CCCeEEEEhHHhh
Confidence 5899999999999999887531 2 2333 9999999999999999999998 5667777765432
Q ss_pred ----C--hHHHHHHHHHHHhcCccccCCccceEEEEEeCCCCCCH-----------H---HHHHHHHHHHHhc--cCccE
Q 017884 117 ----G--IDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTK-----------D---AQFALRRVIEKYT--KNTRF 174 (364)
Q Consensus 117 ----~--~~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~~-----------~---~~~~L~~~le~~~--~~~~~ 174 (364)
+ ...++..+...... .+.||+|||+|.+.. . ....|+..|+... ..+.+
T Consensus 281 sk~vGesek~ir~lF~~Ar~~---------aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViV 351 (467)
T 4b4t_H 281 QKYVGEGARMVRELFEMARTK---------KACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKV 351 (467)
T ss_dssp CCSSSHHHHHHHHHHHHHHHT---------CSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEE
T ss_pred cccCCHHHHHHHHHHHHHHhc---------CCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEE
Confidence 1 12233333322221 368999999999842 1 2344555555433 34567
Q ss_pred EEEeeccccCchhhhc--cc-eEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Q 017884 175 ALICNQVNKIIPALQS--RC-TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNG 234 (364)
Q Consensus 175 Il~~~~~~~l~~~l~s--r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g 234 (364)
|++||.++.+++++++ |+ ..++|+.|+.++..++++.++++..+. .+-.++.|++.+.|
T Consensus 352 IaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~-~dvdl~~LA~~T~G 413 (467)
T 4b4t_H 352 MFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVE-RGIRWELISRLCPN 413 (467)
T ss_dssp EEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBC-SSCCHHHHHHHCCS
T ss_pred EeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCC-CCCCHHHHHHHCCC
Confidence 8888999999999988 77 789999999999999998887654332 11236778888865
No 48
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.78 E-value=1.8e-18 Score=159.04 Aligned_cols=216 Identities=15% Similarity=0.160 Sum_probs=139.6
Q ss_pred hccCCCCCcchhccHHHHHHHHHHHhcCCCCcEEEeCCCCccHHHHHHHHHHHHcCC----CCCC---------------
Q 017884 45 EKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA----QYHN--------------- 105 (364)
Q Consensus 45 ~~~~p~~~~~~vg~~~~~~~l~~~~~~~~~~~lll~G~~G~GKt~la~~l~~~l~~~----~~~~--------------- 105 (364)
..-+|.+|++++|++.++..+..........+++|+||||+|||++|+++++.+... +...
T Consensus 16 ~~~~~~~f~~i~G~~~~~~~l~~~~~~~~~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (350)
T 1g8p_A 16 KTRPVFPFSAIVGQEDMKLALLLTAVDPGIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNVEMIPDWATVL 95 (350)
T ss_dssp --CCCCCGGGSCSCHHHHHHHHHHHHCGGGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSSGGGSCTTCCCS
T ss_pred CCCCCCCchhccChHHHHHHHHHHhhCCCCceEEEECCCCccHHHHHHHHHHhCccccccccccccccccccccchhhhh
Confidence 344678899999999988776665554445679999999999999999999987421 0000
Q ss_pred ---------cEEEEeCCCCCChHHH------HHHHHHHHhcCccccCCccceEEEEEeCCCCCCHHHHHHHHHHHHHh--
Q 017884 106 ---------MILELNASDDRGIDVV------RQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKY-- 168 (364)
Q Consensus 106 ---------~~~~~~~~~~~~~~~~------~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~-- 168 (364)
.++.+... .....+ ...+...........-....+++++|||++.++...++.|+.++++.
T Consensus 96 ~~~~~~~~~~~~~~~~~--~~~~~l~g~~~~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~~~~~~~Ll~~le~~~~ 173 (350)
T 1g8p_A 96 STNVIRKPTPVVDLPLG--VSEDRVVGALDIERAISKGEKAFEPGLLARANRGYLYIDECNLLEDHIVDLLLDVAQSGEN 173 (350)
T ss_dssp CCCEEEECCCEEEECTT--CCHHHHHCEECHHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSCHHHHHHHHHHHHHSEE
T ss_pred ccccccCCCcccccCCC--cchhhheeechhhhhhcCCceeecCceeeecCCCEEEEeChhhCCHHHHHHHHHHHhcCce
Confidence 11111111 011111 11111110000000000113679999999999999999999999974
Q ss_pred -----------ccCccEEEEeeccc-cCchhhhccceE-EEecCCChH-HHHHHHHHH----------------------
Q 017884 169 -----------TKNTRFALICNQVN-KIIPALQSRCTR-FRFAPLEPV-HVTERLKHV---------------------- 212 (364)
Q Consensus 169 -----------~~~~~~Il~~~~~~-~l~~~l~sr~~~-i~~~~~~~~-~~~~~l~~~---------------------- 212 (364)
+.++.+|.++|... .+.+++.+||.. +.+++|+.. +..+++...
T Consensus 174 ~~~~~g~~~~~~~~~~li~~~n~~~~~l~~~L~~R~~~~~~l~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (350)
T 1g8p_A 174 VVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLDRFGLSVEVLSPRDVETRVEVIRRRDTYDADPKAFLEEWRPKDMDIR 253 (350)
T ss_dssp EECCTTCCEEEECCEEEEEEECSCSCCCCHHHHTTCSEEEECCCCCSHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred EEEecceEEeeCCceEEEEEeCCCCCCCCHHHHhhcceEEEcCCCCcHHHHHHHHHHHHhcccCchhhccccccchHHHH
Confidence 23556667777534 788999999954 999999654 333555441
Q ss_pred -------HHHcCCCCCHHHHHHHHHHcCC----CHHHHHHHHHHHHHhc-----ccCchHHHHHhc
Q 017884 213 -------IEAEGLDVTEGGLAALVRLCNG----DMRKALNILQSTHMAS-----QQITEEAVYLCT 262 (364)
Q Consensus 213 -------~~~~~~~i~~~~~~~l~~~~~g----~~r~a~~~l~~~~~~~-----~~i~~~~v~~~~ 262 (364)
....++.++++++++|++++.+ ++|.+.+.++.+...+ ..|+.+++..++
T Consensus 254 ~~i~~~~~~~~~~~ls~~~~~~l~~~~~~~~~~~~R~~~~ll~~a~~~A~~~~~~~v~~~~v~~a~ 319 (350)
T 1g8p_A 254 NQILEARERLPKVEAPNTALYDCAALCIALGSDGLRGELTLLRSARALAALEGATAVGRDHLKRVA 319 (350)
T ss_dssp HHHHHHHHHGGGCBCCHHHHHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCCCcCCHHHHHHHH
Confidence 2234668999999999998865 8999999997655432 357777776543
No 49
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.76 E-value=4.2e-17 Score=151.48 Aligned_cols=198 Identities=21% Similarity=0.286 Sum_probs=133.6
Q ss_pred CCCCcchhccHHHHHHHHHHHhc-----------C-CCCc-EEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCC
Q 017884 49 PQSLADVAAHRDIVDTIDRLTSE-----------N-RLPH-LLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDD 115 (364)
Q Consensus 49 p~~~~~~vg~~~~~~~l~~~~~~-----------~-~~~~-lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~ 115 (364)
..+|+++.|.+++++.|+..+.. | ..|. +|||||||||||++|+++|+++ +..++.++++..
T Consensus 168 ~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~-----~~~~~~v~~~~l 242 (428)
T 4b4t_K 168 DVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANST-----KAAFIRVNGSEF 242 (428)
T ss_dssp SCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHH-----TCEEEEEEGGGT
T ss_pred CCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHh-----CCCeEEEecchh
Confidence 35899999999999998887641 2 2233 9999999999999999999998 567777776543
Q ss_pred CC------hHHHHHHHHHHHhcCccccCCccceEEEEEeCCCCCC--------------HHHHHHHHHHHHHhc--cCcc
Q 017884 116 RG------IDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMT--------------KDAQFALRRVIEKYT--KNTR 173 (364)
Q Consensus 116 ~~------~~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~--------------~~~~~~L~~~le~~~--~~~~ 173 (364)
.+ ...++..+...... .+.|++|||+|.+. ......|+..|+... .++.
T Consensus 243 ~~~~~Ge~e~~ir~lF~~A~~~---------aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~ 313 (428)
T 4b4t_K 243 VHKYLGEGPRMVRDVFRLAREN---------APSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVK 313 (428)
T ss_dssp CCSSCSHHHHHHHHHHHHHHHT---------CSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEE
T ss_pred hccccchhHHHHHHHHHHHHHc---------CCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEE
Confidence 21 12333333322221 36899999998762 123566778888653 3456
Q ss_pred EEEEeeccccCchhhhc--cc-eEEEec-CCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHH
Q 017884 174 FALICNQVNKIIPALQS--RC-TRFRFA-PLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNG-DMRKALNILQSTHM 248 (364)
Q Consensus 174 ~Il~~~~~~~l~~~l~s--r~-~~i~~~-~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g-~~r~a~~~l~~~~~ 248 (364)
+|++||.++.+++++.+ |+ ..++|+ .|+.++...+++.++++.++. ++..++.|+..+.| +...+.+++..++.
T Consensus 314 vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~-~~~dl~~lA~~t~G~sgadi~~l~~eA~~ 392 (428)
T 4b4t_K 314 VIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLA-PEADLDSLIIRNDSLSGAVIAAIMQEAGL 392 (428)
T ss_dssp EEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBC-TTCCHHHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred EEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCC-cccCHHHHHHHCCCCCHHHHHHHHHHHHH
Confidence 78889999999999988 66 568896 677888888888887755432 22237888888765 33333333333322
Q ss_pred h-----cccCchHHHHHh
Q 017884 249 A-----SQQITEEAVYLC 261 (364)
Q Consensus 249 ~-----~~~i~~~~v~~~ 261 (364)
. ...|+.+++..+
T Consensus 393 ~a~r~~~~~i~~~d~~~A 410 (428)
T 4b4t_K 393 RAVRKNRYVILQSDLEEA 410 (428)
T ss_dssp HHHHTTCSSBCHHHHHHH
T ss_pred HHHHCCCCCCCHHHHHHH
Confidence 1 235666666544
No 50
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.76 E-value=7.1e-18 Score=152.44 Aligned_cols=186 Identities=16% Similarity=0.245 Sum_probs=138.7
Q ss_pred cchhccHHHHHHHHHHHhcCC--------C-CcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCCCChHHHHH
Q 017884 53 ADVAAHRDIVDTIDRLTSENR--------L-PHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQ 123 (364)
Q Consensus 53 ~~~vg~~~~~~~l~~~~~~~~--------~-~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (364)
++++|++.+++.+...+..+. + .+++|+||||+|||++|+++++.+.+.+. .++.+++...........
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~--~~~~~~~~~~~~~~~~~~ 94 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEE--AMIRIDMTEYMEKHAVSR 94 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGG--GEEEEEGGGCCSTTHHHH
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCc--ceEEeecccccccccHHH
Confidence 458899999998888877542 1 24899999999999999999999865433 345555543222111111
Q ss_pred H---------------HHHHHhcCccccCCccceEEEEEeCCCCCCHHHHHHHHHHHHHhc-----------cCccEEEE
Q 017884 124 Q---------------IQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYT-----------KNTRFALI 177 (364)
Q Consensus 124 ~---------------i~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~-----------~~~~~Il~ 177 (364)
. +...... ..+++++|||++.++...++.|++++++.. .++.+|++
T Consensus 95 l~g~~~~~~~~~~~~~~~~~~~~--------~~~~vl~lDEi~~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~iiI~t 166 (311)
T 4fcw_A 95 LIGAPPGYVGYEEGGQLTEAVRR--------RPYSVILFDAIEKAHPDVFNILLQMLDDGRLTDSHGRTVDFRNTVIIMT 166 (311)
T ss_dssp HHCCCTTSTTTTTCCHHHHHHHH--------CSSEEEEEETGGGSCHHHHHHHHHHHHHSEEECTTSCEEECTTEEEEEE
T ss_pred hcCCCCccccccccchHHHHHHh--------CCCeEEEEeChhhcCHHHHHHHHHHHhcCEEEcCCCCEEECCCcEEEEe
Confidence 1 1111111 135799999999999999999999999865 25558888
Q ss_pred eec--------------------------cccCchhhhccc-eEEEecCCChHHHHHHHHHHHHHc---------CCCCC
Q 017884 178 CNQ--------------------------VNKIIPALQSRC-TRFRFAPLEPVHVTERLKHVIEAE---------GLDVT 221 (364)
Q Consensus 178 ~~~--------------------------~~~l~~~l~sr~-~~i~~~~~~~~~~~~~l~~~~~~~---------~~~i~ 221 (364)
+|. ...+.+++.+|+ .++.|.||+.+++..++...+.+. ...++
T Consensus 167 tn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~R~~~~~~~~p~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~ 246 (311)
T 4fcw_A 167 SNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQMSYLRARLAEKRISLELT 246 (311)
T ss_dssp ESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHTHHHHHHHHTTTCEEEEC
T ss_pred cccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHhcCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHHhCCcEEEeC
Confidence 887 446788899999 789999999999999888866542 45689
Q ss_pred HHHHHHHHHHc---CCCHHHHHHHHHHHHH
Q 017884 222 EGGLAALVRLC---NGDMRKALNILQSTHM 248 (364)
Q Consensus 222 ~~~~~~l~~~~---~g~~r~a~~~l~~~~~ 248 (364)
+++++.|+++. +||+|.+.+.++.+..
T Consensus 247 ~~~~~~l~~~~~~~~gn~R~L~~~i~~~~~ 276 (311)
T 4fcw_A 247 EAAKDFLAERGYDPVFGARPLRRVIQRELE 276 (311)
T ss_dssp HHHHHHHHHHSCBTTTBTTTHHHHHHHHTH
T ss_pred HHHHHHHHHhCCCccCCchhHHHHHHHHHH
Confidence 99999999975 5999999999887654
No 51
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.75 E-value=3.4e-18 Score=142.96 Aligned_cols=164 Identities=14% Similarity=0.178 Sum_probs=117.8
Q ss_pred CCChhhccCCCCCcchhccHHHHHHHHHHHhcCCCCcEEEeCCCCccHHHHHHHHHHHHcCCCC-----CCcEEEEeCCC
Q 017884 40 ASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQY-----HNMILELNASD 114 (364)
Q Consensus 40 ~~~~~~~~~p~~~~~~vg~~~~~~~l~~~~~~~~~~~lll~G~~G~GKt~la~~l~~~l~~~~~-----~~~~~~~~~~~ 114 (364)
..+|.++|+|..|++++|+++.+..+...+..+...+++|+||+|+|||++++.+++.+.+... ...++.+++..
T Consensus 9 ~~~l~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (195)
T 1jbk_A 9 TIDLTERAEQGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGA 88 (195)
T ss_dssp EEEHHHHHHTTCSCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHH
T ss_pred hHHHHHHHhhccccccccchHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHH
Confidence 3579999999999999999999999999998877777999999999999999999999854221 23444554321
Q ss_pred ----CCChHHHHHHHHHHHhcCccccCCccceEEEEEeCCCCCCHH--------HHHHHHHHHHHhccCccEEEEeeccc
Q 017884 115 ----DRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKD--------AQFALRRVIEKYTKNTRFALICNQVN 182 (364)
Q Consensus 115 ----~~~~~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~--------~~~~L~~~le~~~~~~~~Il~~~~~~ 182 (364)
..........+........ ...++.+|+|||+|.+... .++.|..+++. .++.+|++++...
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~~--~~~~~i~~~~~~~ 162 (195)
T 1jbk_A 89 LVAGAKYRGEFEERLKGVLNDLA----KQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALAR--GELHCVGATTLDE 162 (195)
T ss_dssp HHTTTCSHHHHHHHHHHHHHHHH----HSTTTEEEEEETGGGGTT------CCCCHHHHHHHHHT--TSCCEEEEECHHH
T ss_pred HhccCCccccHHHHHHHHHHHHh----hcCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhcc--CCeEEEEeCCHHH
Confidence 1112222223333222110 0113679999999999632 25666666654 3677888887665
Q ss_pred -----cCchhhhccceEEEecCCChHHHHHHH
Q 017884 183 -----KIIPALQSRCTRFRFAPLEPVHVTERL 209 (364)
Q Consensus 183 -----~l~~~l~sr~~~i~~~~~~~~~~~~~l 209 (364)
.+.+++.+||..+.|++|+.++..+++
T Consensus 163 ~~~~~~~~~~l~~r~~~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 163 YRQYIEKDAALERRFQKVFVAEPSVEDTIAIL 194 (195)
T ss_dssp HHHHTTTCHHHHTTEEEEECCCCCHHHHHTTC
T ss_pred HHHHHhcCHHHHHHhceeecCCCCHHHHHHHh
Confidence 678999999989999999999887664
No 52
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.75 E-value=5.7e-17 Score=153.07 Aligned_cols=199 Identities=21% Similarity=0.298 Sum_probs=140.0
Q ss_pred CCCCCcchhccHHHHHHHHHHHhc-----------CCCC-cEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCC
Q 017884 48 RPQSLADVAAHRDIVDTIDRLTSE-----------NRLP-HLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDD 115 (364)
Q Consensus 48 ~p~~~~~~vg~~~~~~~l~~~~~~-----------~~~~-~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~ 115 (364)
.+.+|++++|++.++..++..+.. ...| +++|+||||+|||+++++++... ...++.++++..
T Consensus 11 ~~~~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~-----~~~f~~is~~~~ 85 (476)
T 2ce7_A 11 KRVTFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEA-----NVPFFHISGSDF 85 (476)
T ss_dssp CCCCGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHH-----TCCEEEEEGGGT
T ss_pred CCCCHHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHc-----CCCeeeCCHHHH
Confidence 345899999999999988877642 1233 49999999999999999999987 345666665442
Q ss_pred C----C--hHHHHHHHHHHHhcCccccCCccceEEEEEeCCCCCCH--------------HHHHHHHHHHHHh--ccCcc
Q 017884 116 R----G--IDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTK--------------DAQFALRRVIEKY--TKNTR 173 (364)
Q Consensus 116 ~----~--~~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~~--------------~~~~~L~~~le~~--~~~~~ 173 (364)
. + ...++..+...... .+.+|+|||+|.+.. ..++.|+..|+.. ...+.
T Consensus 86 ~~~~~g~~~~~~r~lf~~A~~~---------~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~vi 156 (476)
T 2ce7_A 86 VELFVGVGAARVRDLFAQAKAH---------APCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGII 156 (476)
T ss_dssp TTCCTTHHHHHHHHHHHHHHHT---------CSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEE
T ss_pred HHHHhcccHHHHHHHHHHHHhc---------CCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEE
Confidence 2 1 12233333332211 368999999999853 2356677777643 34567
Q ss_pred EEEEeeccccCchhhhc--cc-eEEEecCCChHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCCCH-HHHHHHHHHHHH
Q 017884 174 FALICNQVNKIIPALQS--RC-TRFRFAPLEPVHVTERLKHVIEAEGLDVTEG-GLAALVRLCNGDM-RKALNILQSTHM 248 (364)
Q Consensus 174 ~Il~~~~~~~l~~~l~s--r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~-~~~~l~~~~~g~~-r~a~~~l~~~~~ 248 (364)
+|.+||.++.+++++.+ |+ ..+.+++|+.++..++++..++..+ +.++ .+..++..+.|+. +.+.++++.++.
T Consensus 157 VIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~--l~~~v~l~~la~~t~G~sgadL~~lv~~Aal 234 (476)
T 2ce7_A 157 VMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKP--LAEDVNLEIIAKRTPGFVGADLENLVNEAAL 234 (476)
T ss_dssp EEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSC--BCTTCCHHHHHHTCTTCCHHHHHHHHHHHHH
T ss_pred EEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCC--CcchhhHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 78888888888888876 66 5789999999999999987776543 3333 3778999998877 667777765544
Q ss_pred hc-----ccCchHHHHHhc
Q 017884 249 AS-----QQITEEAVYLCT 262 (364)
Q Consensus 249 ~~-----~~i~~~~v~~~~ 262 (364)
.+ ..|+.+++..++
T Consensus 235 ~A~~~~~~~I~~~dl~~al 253 (476)
T 2ce7_A 235 LAAREGRDKITMKDFEEAI 253 (476)
T ss_dssp HHHHTTCSSBCHHHHHHHH
T ss_pred HHHHcCCCeecHHHHHHHH
Confidence 32 468888876654
No 53
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.75 E-value=3.4e-17 Score=147.21 Aligned_cols=187 Identities=19% Similarity=0.240 Sum_probs=129.2
Q ss_pred ccCCCCCcchhccHHHHHHHHHHHhc-----------C-CC-CcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeC
Q 017884 46 KYRPQSLADVAAHRDIVDTIDRLTSE-----------N-RL-PHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNA 112 (364)
Q Consensus 46 ~~~p~~~~~~vg~~~~~~~l~~~~~~-----------~-~~-~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~ 112 (364)
++.+.+|++++|.+.+++.|+.++.. + .. .+++|+||||+|||++|+++++.+ ...++.+++
T Consensus 8 ~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~-----~~~~i~v~~ 82 (301)
T 3cf0_A 8 EVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC-----QANFISIKG 82 (301)
T ss_dssp ECCCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHT-----TCEEEEECH
T ss_pred cCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHh-----CCCEEEEEh
Confidence 45667899999999999999888753 1 22 349999999999999999999987 345666654
Q ss_pred CCC------CChHHHHHHHHHHHhcCccccCCccceEEEEEeCCCCCCHH--------------HHHHHHHHHHHh--cc
Q 017884 113 SDD------RGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKD--------------AQFALRRVIEKY--TK 170 (364)
Q Consensus 113 ~~~------~~~~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~--------------~~~~L~~~le~~--~~ 170 (364)
... .....++..+...... .+.+++|||+|.+... .++.|+..++.. ..
T Consensus 83 ~~l~~~~~g~~~~~~~~~f~~a~~~---------~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~ 153 (301)
T 3cf0_A 83 PELLTMWFGESEANVREIFDKARQA---------APCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKK 153 (301)
T ss_dssp HHHHHHHHTTCTTHHHHHHHHHHHT---------CSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTS
T ss_pred HHHHhhhcCchHHHHHHHHHHHHhc---------CCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCC
Confidence 321 0111222322222111 3679999999987543 357788888753 34
Q ss_pred CccEEEEeeccccCchhhhc--cc-eEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHH
Q 017884 171 NTRFALICNQVNKIIPALQS--RC-TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNG-DMRKALNILQST 246 (364)
Q Consensus 171 ~~~~Il~~~~~~~l~~~l~s--r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g-~~r~a~~~l~~~ 246 (364)
++.+|.+||.++.+.+++.+ |+ ..+.+++|+.++..+++...+++.+.. .+..++.++..+.| ..+.+.++++.+
T Consensus 154 ~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~-~~~~~~~la~~~~g~sg~dl~~l~~~a 232 (301)
T 3cf0_A 154 NVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVA-KDVDLEFLAKMTNGFSGADLTEICQRA 232 (301)
T ss_dssp SEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBC-SSCCHHHHHHTCSSCCHHHHHHHHHHH
T ss_pred CEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCC-ccchHHHHHHHcCCCCHHHHHHHHHHH
Confidence 56788888999899999888 77 679999999999999999888766542 22234566666644 233444444444
Q ss_pred H
Q 017884 247 H 247 (364)
Q Consensus 247 ~ 247 (364)
.
T Consensus 233 ~ 233 (301)
T 3cf0_A 233 C 233 (301)
T ss_dssp H
T ss_pred H
Confidence 3
No 54
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.74 E-value=6.4e-18 Score=172.32 Aligned_cols=203 Identities=14% Similarity=0.188 Sum_probs=141.1
Q ss_pred CCChhhccCCCCCcchhccHHHHHHHHHHHhcCCCCcEEEeCCCCccHHHHHHHHHHHHcCCC-----CCCcEEEEeCCC
Q 017884 40 ASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ-----YHNMILELNASD 114 (364)
Q Consensus 40 ~~~~~~~~~p~~~~~~vg~~~~~~~l~~~~~~~~~~~lll~G~~G~GKt~la~~l~~~l~~~~-----~~~~~~~~~~~~ 114 (364)
..+|.++|+|..|++++|++..+..+...+..+..++++|+||||+|||++++.+++.+.+.. ....++.+++..
T Consensus 157 ~~~l~~~~r~~~ld~viGr~~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~ 236 (854)
T 1qvr_A 157 GIDLTRLAAEGKLDPVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGS 236 (854)
T ss_dssp EEEHHHHHHTTCSCCCCSCHHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC--
T ss_pred HHhHHHHHhcCCCcccCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHH
Confidence 357899999999999999999999999999888778899999999999999999999985422 144566666543
Q ss_pred CCC----hHHHHHHHHHHHhcCccccCCccceEEEEEeCCCCCC--------HHHHHHHHHHHHHhccCccEEEEeeccc
Q 017884 115 DRG----IDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMT--------KDAQFALRRVIEKYTKNTRFALICNQVN 182 (364)
Q Consensus 115 ~~~----~~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~--------~~~~~~L~~~le~~~~~~~~Il~~~~~~ 182 (364)
... .......+......... . .++.+++|||+|.+. ....+.|..+++. ....+|.+++...
T Consensus 237 l~~g~~~~g~~~~~l~~~~~~~~~--~--~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~~--~~i~~I~at~~~~ 310 (854)
T 1qvr_A 237 LLAGAKYRGEFEERLKAVIQEVVQ--S--QGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALAR--GELRLIGATTLDE 310 (854)
T ss_dssp ---------CHHHHHHHHHHHHHT--T--CSSEEEEECCC-------------------HHHHHT--TCCCEEEEECHHH
T ss_pred hhccCccchHHHHHHHHHHHHHHh--c--CCCeEEEEecHHHHhccCCccchHHHHHHHHHHHhC--CCeEEEEecCchH
Confidence 211 11122222222211100 0 136799999999996 3445667777764 3566777776543
Q ss_pred ----cCchhhhccceEEEecCCChHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCC------CHHHHHHHHHHHHH
Q 017884 183 ----KIIPALQSRCTRFRFAPLEPVHVTERLKHVIEA----EGLDVTEGGLAALVRLCNG------DMRKALNILQSTHM 248 (364)
Q Consensus 183 ----~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~----~~~~i~~~~~~~l~~~~~g------~~r~a~~~l~~~~~ 248 (364)
.+.+++.+||..+.|++|+.++...++...+.. .++.++++++..++..++| -+.+++++++.++.
T Consensus 311 ~~~~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~~~~~~~~~~~~i~~~al~~~~~ls~r~i~~~~lp~kai~lldea~a 390 (854)
T 1qvr_A 311 YREIEKDPALERRFQPVYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSHRYITERRLPDKAIDLIDEAAA 390 (854)
T ss_dssp HHHHTTCTTTCSCCCCEEECCCCHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHCCSSCTHHHHHHHHHHHHH
T ss_pred HhhhccCHHHHhCCceEEeCCCCHHHHHHHHHhhhhhhhhhcCCCCCHHHHHHHHHHHhhhcccccChHHHHHHHHHHHH
Confidence 468899999999999999999999999876653 4788999999999988743 38888888876654
No 55
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.73 E-value=7e-17 Score=142.53 Aligned_cols=204 Identities=16% Similarity=0.147 Sum_probs=134.7
Q ss_pred CCcchhccHHHHHHHHHHHhc--CCCCcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCCCChHHHHHHHHHH
Q 017884 51 SLADVAAHRDIVDTIDRLTSE--NRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDF 128 (364)
Q Consensus 51 ~~~~~vg~~~~~~~l~~~~~~--~~~~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 128 (364)
+|++++|+...+..+...+.. ....+++|+||+|+|||++|+++++..... ...++.++++... .+.+...+...
T Consensus 4 ~f~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~~~--~~~~~~v~~~~~~-~~~~~~~l~g~ 80 (265)
T 2bjv_A 4 YKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRW--QGPFISLNCAALN-ENLLDSELFGH 80 (265)
T ss_dssp ------CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTSTTT--TSCEEEEEGGGSC-HHHHHHHHHCC
T ss_pred ccccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcCcc--CCCeEEEecCCCC-hhHHHHHhcCC
Confidence 688999999888877766553 223459999999999999999999886432 3456777776532 22222221100
Q ss_pred -----Hhc---CccccCCccceEEEEEeCCCCCCHHHHHHHHHHHHHh-----------ccCccEEEEeecc-------c
Q 017884 129 -----AST---QSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKY-----------TKNTRFALICNQV-------N 182 (364)
Q Consensus 129 -----~~~---~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~-----------~~~~~~Il~~~~~-------~ 182 (364)
... ....+. ...+++|+|||++.++...++.|+.++++. +.++++|+++|.. .
T Consensus 81 ~~~~~~g~~~~~~~~l~-~a~~~~l~lDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~~iI~atn~~~~~~~~~~ 159 (265)
T 2bjv_A 81 EAGAFTGAQKRHPGRFE-RADGGTLFLDELATAPMMVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEG 159 (265)
T ss_dssp C---------CCCCHHH-HTTTSEEEEESGGGSCHHHHHHHHHHHHHCEECCCCC--CEECCCEEEEEESSCHHHHHHHT
T ss_pred cccccccccccccchhh-hcCCcEEEEechHhcCHHHHHHHHHHHHhCCeecCCCcccccCCeEEEEecCcCHHHHHHcC
Confidence 000 000000 013579999999999999999999999974 3467888888763 2
Q ss_pred cCchhhhccce--EEEecCCCh--HHHHHHH----HHHHHHcCC----CCCHHHHHHHHHHc-CCCHHHHHHHHHHHHHh
Q 017884 183 KIIPALQSRCT--RFRFAPLEP--VHVTERL----KHVIEAEGL----DVTEGGLAALVRLC-NGDMRKALNILQSTHMA 249 (364)
Q Consensus 183 ~l~~~l~sr~~--~i~~~~~~~--~~~~~~l----~~~~~~~~~----~i~~~~~~~l~~~~-~g~~r~a~~~l~~~~~~ 249 (364)
.+.+.+.+|+. .+.++|+.. +++..++ ...+...+. .+++++++.|..+. .||+|.+.+.++.+...
T Consensus 160 ~~~~~L~~Rl~~~~i~lp~L~~R~~di~~l~~~~l~~~~~~~~~~~~~~~~~~a~~~L~~~~~~gn~reL~~~l~~~~~~ 239 (265)
T 2bjv_A 160 TFRADLLDALAFDVVQLPPLRERESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYR 239 (265)
T ss_dssp SSCHHHHHHHCSEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCSSCCCBCHHHHHHHHHSCCTTHHHHHHHHHHHHHHH
T ss_pred CccHHHHHhhcCcEEeCCChhhhhHHHHHHHHHHHHHHHHHhCCCcccCcCHHHHHHHHhCCCCCCHHHHHHHHHHHHHh
Confidence 46688889973 577788775 4555444 444444554 68999999998775 89999999999887654
Q ss_pred c--ccCchHHH
Q 017884 250 S--QQITEEAV 258 (364)
Q Consensus 250 ~--~~i~~~~v 258 (364)
. ..|+.+++
T Consensus 240 ~~~~~i~~~~l 250 (265)
T 2bjv_A 240 HGTSDYPLDDI 250 (265)
T ss_dssp HCCSSSCBCCC
T ss_pred CCCCcCcHHHc
Confidence 3 35766665
No 56
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.72 E-value=1.4e-17 Score=138.63 Aligned_cols=158 Identities=15% Similarity=0.160 Sum_probs=111.4
Q ss_pred CCCCChhhccCCCCCcchhccHHHHHHHHHHHhcCCCCcEEEeCCCCccHHHHHHHHHHHHcCCC-----CCCcEEEEeC
Q 017884 38 IKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ-----YHNMILELNA 112 (364)
Q Consensus 38 ~~~~~~~~~~~p~~~~~~vg~~~~~~~l~~~~~~~~~~~lll~G~~G~GKt~la~~l~~~l~~~~-----~~~~~~~~~~ 112 (364)
....+|.++|+|..|++++|++..+..+...+.....++++|+||+|+|||++++.+++.+.+.. ....++.++.
T Consensus 7 ~~~~~l~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (187)
T 2p65_A 7 KYSRDLTALARAGKLDPVIGRDTEIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLDL 86 (187)
T ss_dssp TTEEEHHHHHHTTCSCCCCSCHHHHHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEECH
T ss_pred HHHHHHHHHHhccccchhhcchHHHHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEeH
Confidence 34568999999999999999999999999999887777799999999999999999999985522 1334444443
Q ss_pred CCC----CChHHHHHHHHHHHhcCccccCCccceEEEEEeCCCCCC---------HHHHHHHHHHHHHhccCccEEEEee
Q 017884 113 SDD----RGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMT---------KDAQFALRRVIEKYTKNTRFALICN 179 (364)
Q Consensus 113 ~~~----~~~~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~---------~~~~~~L~~~le~~~~~~~~Il~~~ 179 (364)
... .........+........ ...++.+++|||++.+. ....+.|...++. ..+.+|++++
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~~l~~~~~~--~~~~ii~~~~ 160 (187)
T 2p65_A 87 SSLIAGAKYRGDFEERLKSILKEVQ----DAEGQVVMFIDEIHTVVGAGAVAEGALDAGNILKPMLAR--GELRCIGATT 160 (187)
T ss_dssp HHHHHHCCSHHHHHHHHHHHHHHHH----HTTTSEEEEETTGGGGSSSSSSCTTSCCTHHHHHHHHHT--TCSCEEEEEC
T ss_pred HHhhcCCCchhHHHHHHHHHHHHHH----hcCCceEEEEeCHHHhcccccccccchHHHHHHHHHHhc--CCeeEEEecC
Confidence 211 111222222222221111 00136799999999996 3445667666654 4577888887
Q ss_pred ccc-----cCchhhhccceEEEecCCC
Q 017884 180 QVN-----KIIPALQSRCTRFRFAPLE 201 (364)
Q Consensus 180 ~~~-----~l~~~l~sr~~~i~~~~~~ 201 (364)
... .+.+++.+||..+.+++|+
T Consensus 161 ~~~~~~~~~~~~~l~~R~~~i~i~~p~ 187 (187)
T 2p65_A 161 VSEYRQFIEKDKALERRFQQILVEQPS 187 (187)
T ss_dssp HHHHHHHTTTCHHHHHHEEEEECCSCC
T ss_pred HHHHHHHHhccHHHHHhcCcccCCCCC
Confidence 654 5789999999989998875
No 57
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.71 E-value=5.2e-17 Score=157.10 Aligned_cols=203 Identities=20% Similarity=0.258 Sum_probs=136.5
Q ss_pred CcchhccHHHHHHHHHHHh------cCCCCcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCCCChHHH----
Q 017884 52 LADVAAHRDIVDTIDRLTS------ENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVV---- 121 (364)
Q Consensus 52 ~~~~vg~~~~~~~l~~~~~------~~~~~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~---- 121 (364)
.++++|.+++...+...+. ....++++|+||||+|||+++++++..+ ...+..+++.........
T Consensus 80 ~~di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l-----~~~~~~i~~~~~~~~~~~~g~~ 154 (543)
T 3m6a_A 80 DEEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSL-----GRKFVRISLGGVRDESEIRGHR 154 (543)
T ss_dssp HHHCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHH-----TCEEEEECCCC-----------
T ss_pred HHHhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhc-----CCCeEEEEecccchhhhhhhHH
Confidence 4568999999887765543 1234458999999999999999999998 334555554332111111
Q ss_pred -------HHHHHHHHhcCccccCCccceEEEEEeCCCCCCHH----HHHHHHHHHHHhc---------------cCccEE
Q 017884 122 -------RQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKD----AQFALRRVIEKYT---------------KNTRFA 175 (364)
Q Consensus 122 -------~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~----~~~~L~~~le~~~---------------~~~~~I 175 (364)
...+....... .. ...+++|||++.+... .++.|++.|+... .++.+|
T Consensus 155 ~~~ig~~~~~~~~~~~~a----~~--~~~vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI 228 (543)
T 3m6a_A 155 RTYVGAMPGRIIQGMKKA----GK--LNPVFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFI 228 (543)
T ss_dssp ---------CHHHHHHTT----CS--SSEEEEEEESSSCC---------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEE
T ss_pred HHHhccCchHHHHHHHHh----hc--cCCEEEEhhhhhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeecccceEEE
Confidence 11111111110 01 2449999999999876 4578888886432 456788
Q ss_pred EEeeccccCchhhhccceEEEecCCChHHHHHHHHHHHH-----Hc-----CCCCCHHHHHHHHHHc--CCCHHHHHHHH
Q 017884 176 LICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIE-----AE-----GLDVTEGGLAALVRLC--NGDMRKALNIL 243 (364)
Q Consensus 176 l~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~-----~~-----~~~i~~~~~~~l~~~~--~g~~r~a~~~l 243 (364)
+++|....+++++++||.++.|++|+.++...++...+. .. ++.++++++..++..+ .|++|.+.+.+
T Consensus 229 ~ttN~~~~l~~aL~~R~~vi~~~~~~~~e~~~Il~~~l~~~~~~~~~~~~~~i~i~~~~l~~l~~~~~~~~~vR~L~~~i 308 (543)
T 3m6a_A 229 ATANNLATIPGPLRDRMEIINIAGYTEIEKLEIVKDHLLPKQIKEHGLKKSNLQLRDQAILDIIRYYTREAGVRSLERQL 308 (543)
T ss_dssp EECSSTTTSCHHHHHHEEEEECCCCCHHHHHHHHHHTHHHHHHHHTTCCGGGCEECHHHHHHHHHHHCCCSSSHHHHHHH
T ss_pred eccCccccCCHHHHhhcceeeeCCCCHHHHHHHHHHHHHHHHHHHcCCCcccccCCHHHHHHHHHhCChhhchhHHHHHH
Confidence 888999999999999999999999999999988887652 22 4567899999988744 37888888777
Q ss_pred HHHHHhc-----------ccCchHHHHHhcCCC
Q 017884 244 QSTHMAS-----------QQITEEAVYLCTGNP 265 (364)
Q Consensus 244 ~~~~~~~-----------~~i~~~~v~~~~~~~ 265 (364)
+.++... ..|+.+++.+.++..
T Consensus 309 ~~~~~~aa~~~~~~~~~~~~It~~~l~~~Lg~~ 341 (543)
T 3m6a_A 309 AAICRKAAKAIVAEERKRITVTEKNLQDFIGKR 341 (543)
T ss_dssp HHHHHHHHHHHHTTCCSCCEECTTTTHHHHCSC
T ss_pred HHHHHHHHHHHHhcCCcceecCHHHHHHHhCCc
Confidence 6544321 157788887776543
No 58
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.71 E-value=6.8e-17 Score=162.97 Aligned_cols=195 Identities=15% Similarity=0.204 Sum_probs=141.7
Q ss_pred CCCChhhccCCCCCcchhccHHHHHHHHHHHhcCCCCcEEEeCCCCccHHHHHHHHHHHHcCCC-----CCCcEEEEeCC
Q 017884 39 KASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ-----YHNMILELNAS 113 (364)
Q Consensus 39 ~~~~~~~~~~p~~~~~~vg~~~~~~~l~~~~~~~~~~~lll~G~~G~GKt~la~~l~~~l~~~~-----~~~~~~~~~~~ 113 (364)
...+|.++++|..+++++|++..+..+...+.....++++|+||||+|||++|+++++.+.+.. ....++.++..
T Consensus 166 ~~~~l~~~~~~~~ld~iiG~~~~i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~g 245 (758)
T 3pxi_A 166 LARDLTAIAKEDSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG 245 (758)
T ss_dssp SCCBHHHHTTSSCSCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC---
T ss_pred HHHHHHHHHhhCCCCCccCchHHHHHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEeccc
Confidence 3568999999999999999999999999999988888899999999999999999999985432 12334444431
Q ss_pred CC-C--ChHHHHHHHHHHHhcCccccCCccceEEEEEeCCCCCCHHHHHHHHHHHHHhccCccEEEEeeccc-----cCc
Q 017884 114 DD-R--GIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVN-----KII 185 (364)
Q Consensus 114 ~~-~--~~~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~-----~l~ 185 (364)
.. . ....++..+...... ++.+++|| ...+.++.|+..++ ...+++|.+|+... .+.
T Consensus 246 ~~~~G~~e~~l~~~~~~~~~~---------~~~iLfiD----~~~~~~~~L~~~l~--~~~v~~I~at~~~~~~~~~~~d 310 (758)
T 3pxi_A 246 TKYRGEFEDRLKKVMDEIRQA---------GNIILFID----AAIDASNILKPSLA--RGELQCIGATTLDEYRKYIEKD 310 (758)
T ss_dssp -------CTTHHHHHHHHHTC---------CCCEEEEC----C--------CCCTT--SSSCEEEEECCTTTTHHHHTTC
T ss_pred ccccchHHHHHHHHHHHHHhc---------CCEEEEEc----CchhHHHHHHHHHh--cCCEEEEeCCChHHHHHHhhcc
Confidence 10 0 111334434433221 46799999 34456777877777 34677888887666 688
Q ss_pred hhhhccceEEEecCCChHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcC------CCHHHHHHHHHHHHH
Q 017884 186 PALQSRCTRFRFAPLEPVHVTERLKHVIEA----EGLDVTEGGLAALVRLCN------GDMRKALNILQSTHM 248 (364)
Q Consensus 186 ~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~----~~~~i~~~~~~~l~~~~~------g~~r~a~~~l~~~~~ 248 (364)
+++.+||..+.|++|+.++...++...+.. .++.++++++..++.++. ..++.++.+++.++.
T Consensus 311 ~al~rRf~~i~v~~p~~~~~~~il~~~~~~~~~~~~~~i~~~al~~~~~~s~~~i~~~~~p~~ai~ll~~a~~ 383 (758)
T 3pxi_A 311 AALERRFQPIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAIDLIDEAGS 383 (758)
T ss_dssp SHHHHSEEEEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHHHHHHHHH
T ss_pred HHHHhhCcEEEeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcccccCcCCcHHHHHHHHHHH
Confidence 999999999999999999999999977665 578899999999998763 346788888876543
No 59
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.71 E-value=1.5e-16 Score=160.65 Aligned_cols=220 Identities=12% Similarity=0.128 Sum_probs=153.0
Q ss_pred CCCCCCChhhccCCCCCcchhccHHHHHHHHHHHhcCCCCcEEEeCCCCccHHHHHHHHHHHHcCCCC-----CCcEEEE
Q 017884 36 PDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQY-----HNMILEL 110 (364)
Q Consensus 36 ~~~~~~~~~~~~~p~~~~~~vg~~~~~~~l~~~~~~~~~~~lll~G~~G~GKt~la~~l~~~l~~~~~-----~~~~~~~ 110 (364)
......+|.++++|..|++++|++..+..+.+.+......+++|+||||+|||++++.+++.+.+... ...++.+
T Consensus 169 l~~~~~~l~~~~~~~~~d~~iGr~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~ 248 (758)
T 1r6b_X 169 LENFTTNLNQLARVGGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL 248 (758)
T ss_dssp CCSSSCBHHHHHHTTCSCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEEC
T ss_pred HHHHhHhHHHHHhcCCCCCccCCHHHHHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEE
Confidence 34456789999999999999999999999999998887788999999999999999999999854332 2233333
Q ss_pred eCCCC----CChHHHHHHHHHHHhcCccccCCccceEEEEEeCCCCCC---------HHHHHHHHHHHHHhccCccEEEE
Q 017884 111 NASDD----RGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMT---------KDAQFALRRVIEKYTKNTRFALI 177 (364)
Q Consensus 111 ~~~~~----~~~~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~---------~~~~~~L~~~le~~~~~~~~Il~ 177 (364)
+.... .........+........ . ..+.+++|||+|.+. .+..+.|..+++. ....+|.+
T Consensus 249 ~~~~l~~~~~~~g~~e~~l~~~~~~~~---~--~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~~--~~~~~I~a 321 (758)
T 1r6b_X 249 DIGSLLAGTKYRGDFEKRFKALLKQLE---Q--DTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS--GKIRVIGS 321 (758)
T ss_dssp CCC---CCCCCSSCHHHHHHHHHHHHS---S--SSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSSS--CCCEEEEE
T ss_pred cHHHHhccccccchHHHHHHHHHHHHH---h--cCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHhC--CCeEEEEE
Confidence 32211 011122223333222111 1 136899999999993 2234444444442 35667777
Q ss_pred eeccc-----cCchhhhccceEEEecCCChHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCC------CHHHHHHH
Q 017884 178 CNQVN-----KIIPALQSRCTRFRFAPLEPVHVTERLKHVIEA----EGLDVTEGGLAALVRLCNG------DMRKALNI 242 (364)
Q Consensus 178 ~~~~~-----~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~----~~~~i~~~~~~~l~~~~~g------~~r~a~~~ 242 (364)
++... ..++++.+||..+.|++|+.++..+++...+.. .++.++++++..++..+.| .+..+++.
T Consensus 322 t~~~~~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~~~~~~~~~v~~~~~al~~~~~~s~~~i~~~~lp~~~i~l 401 (758)
T 1r6b_X 322 TTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDV 401 (758)
T ss_dssp ECHHHHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHCTTSCTTHHHHHH
T ss_pred eCchHHhhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhcccccCchHHHHH
Confidence 76432 456889999999999999999999999887765 5888999999999887643 45677777
Q ss_pred HHHHHHh---------cccCchHHHHHhc
Q 017884 243 LQSTHMA---------SQQITEEAVYLCT 262 (364)
Q Consensus 243 l~~~~~~---------~~~i~~~~v~~~~ 262 (364)
++.+... ...++.+++..++
T Consensus 402 ld~a~~~~~~~~~~~~~~~v~~~di~~~~ 430 (758)
T 1r6b_X 402 IDEAGARARLMPVSKRKKTVNVADIESVV 430 (758)
T ss_dssp HHHHHHHHHHSSSCCCCCSCCHHHHHHHH
T ss_pred HHHHHHHHhcccccccCCccCHHHHHHHH
Confidence 7655432 1357777776553
No 60
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.70 E-value=8.5e-17 Score=142.54 Aligned_cols=183 Identities=14% Similarity=0.214 Sum_probs=116.3
Q ss_pred cchhccHHHHHHHHH-------HHh---cCCCCcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCCC---ChH
Q 017884 53 ADVAAHRDIVDTIDR-------LTS---ENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDR---GID 119 (364)
Q Consensus 53 ~~~vg~~~~~~~l~~-------~~~---~~~~~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~---~~~ 119 (364)
..++|+...+..+.. .+. .....+++|+||||+|||++|+++++.+ ...++.++++... ...
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~-----~~~~~~i~~~~~~~g~~~~ 107 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEES-----NFPFIKICSPDKMIGFSET 107 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHH-----TCSEEEEECGGGCTTCCHH
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHh-----CCCEEEEeCHHHhcCCchH
Confidence 346666555443333 343 2233349999999999999999999996 3455666654311 111
Q ss_pred HHHHHHHHHHhcCccccCCccceEEEEEeCCCCC----------CHHHHHHHHHHHHH---hccCccEEEEeeccccCch
Q 017884 120 VVRQQIQDFASTQSFSFGVKASVKLVLLDEADAM----------TKDAQFALRRVIEK---YTKNTRFALICNQVNKIIP 186 (364)
Q Consensus 120 ~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l----------~~~~~~~L~~~le~---~~~~~~~Il~~~~~~~l~~ 186 (364)
.....+....... .. ..+.+|+|||+|.+ ....++.|...++. .+..+.+|.++|.+..+.+
T Consensus 108 ~~~~~~~~~~~~~---~~--~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~~ 182 (272)
T 1d2n_A 108 AKCQAMKKIFDDA---YK--SQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQE 182 (272)
T ss_dssp HHHHHHHHHHHHH---HT--SSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHH
T ss_pred HHHHHHHHHHHHH---Hh--cCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhcch
Confidence 1111222211110 00 14789999999887 34445555555553 2223446666776665655
Q ss_pred -hhhccc-eEEEecCCCh-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-----CHHHHHHHHHHHHHhc
Q 017884 187 -ALQSRC-TRFRFAPLEP-VHVTERLKHVIEAEGLDVTEGGLAALVRLCNG-----DMRKALNILQSTHMAS 250 (364)
Q Consensus 187 -~l~sr~-~~i~~~~~~~-~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g-----~~r~a~~~l~~~~~~~ 250 (364)
.+.+|+ ..+.+++++. +++..++... ..++++.+..+++.+.| ++|.+++.++.+....
T Consensus 183 ~~l~~rf~~~i~~p~l~~r~~i~~i~~~~-----~~~~~~~~~~l~~~~~g~~~~g~ir~l~~~l~~a~~~~ 249 (272)
T 1d2n_A 183 MEMLNAFSTTIHVPNIATGEQLLEALELL-----GNFKDKERTTIAQQVKGKKVWIGIKKLLMLIEMSLQMD 249 (272)
T ss_dssp TTCTTTSSEEEECCCEEEHHHHHHHHHHH-----TCSCHHHHHHHHHHHTTSEEEECHHHHHHHHHHHTTSC
T ss_pred hhhhcccceEEcCCCccHHHHHHHHHHhc-----CCCCHHHHHHHHHHhcCCCccccHHHHHHHHHHHhhhc
Confidence 577884 8899988887 6666665542 25789999999999987 9999999999876433
No 61
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.70 E-value=1.9e-18 Score=152.83 Aligned_cols=205 Identities=20% Similarity=0.236 Sum_probs=135.0
Q ss_pred ccCCCCCcchhccHHHHHHHHHHHhc-----------CC-CCcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCC
Q 017884 46 KYRPQSLADVAAHRDIVDTIDRLTSE-----------NR-LPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNAS 113 (364)
Q Consensus 46 ~~~p~~~~~~vg~~~~~~~l~~~~~~-----------~~-~~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~ 113 (364)
++.+.+|++++|++.+++.+...+.. .. ..+++|+||||+|||++|+++++.+... ++.+++.
T Consensus 4 ~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~-----~~~v~~~ 78 (268)
T 2r62_A 4 EKPNVRFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVP-----FFSMGGS 78 (268)
T ss_dssp CCCCCCSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCC-----CCCCCSC
T ss_pred cCCCCCHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCC-----EEEechH
Confidence 45667899999999999988887651 22 2348999999999999999999997432 2333332
Q ss_pred CCC------ChHHHHHHHHHHHhcCccccCCccceEEEEEeCCCCCCHHH---------------HHHHHHHHHHhcc--
Q 017884 114 DDR------GIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDA---------------QFALRRVIEKYTK-- 170 (364)
Q Consensus 114 ~~~------~~~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~---------------~~~L~~~le~~~~-- 170 (364)
... +...++..+...... .+.+|+|||+|.+.... ++.|+..++....
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~a~~~---------~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~ 149 (268)
T 2r62_A 79 SFIEMFVGLGASRVRDLFETAKKQ---------APSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSEN 149 (268)
T ss_dssp TTTTSCSSSCSSSSSTTHHHHHHS---------CSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSC
T ss_pred HHHHhhcchHHHHHHHHHHHHHhc---------CCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCC
Confidence 211 111111222222111 35799999999996532 3456666654432
Q ss_pred -CccEEEEeeccccCchhhhc--cc-eEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHH
Q 017884 171 -NTRFALICNQVNKIIPALQS--RC-TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNG-DMRKALNILQS 245 (364)
Q Consensus 171 -~~~~Il~~~~~~~l~~~l~s--r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g-~~r~a~~~l~~ 245 (364)
.+.+|.++|.+..+.+.+.+ |+ ..+.|++|+.++..+++...++..+.. ++..++.++..+.| ..+.+.+.++.
T Consensus 150 ~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~g~~g~dl~~l~~~ 228 (268)
T 2r62_A 150 APVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLA-NDVNLQEVAKLTAGLAGADLANIINE 228 (268)
T ss_dssp SCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCC-SSCCTTTTTSSSCSSCHHHHHHHHHH
T ss_pred CCEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCC-CccCHHHHHHHcCCCCHHHHHHHHHH
Confidence 25567777888888888888 65 679999999999999998877644322 22235667777766 44566666665
Q ss_pred HHHhc-----ccCchHHHHHhcCCC
Q 017884 246 THMAS-----QQITEEAVYLCTGNP 265 (364)
Q Consensus 246 ~~~~~-----~~i~~~~v~~~~~~~ 265 (364)
+...+ ..|+.+++..++...
T Consensus 229 a~~~a~~~~~~~i~~~~~~~a~~~~ 253 (268)
T 2r62_A 229 AALLAGRNNQKEVRQQHLKEAVERG 253 (268)
T ss_dssp HHHTTSSSCCCSCCHHHHHTSCTTC
T ss_pred HHHHHHHhccCCcCHHHHHHHHHHH
Confidence 55433 368999988776644
No 62
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.70 E-value=1.3e-15 Score=136.79 Aligned_cols=203 Identities=16% Similarity=0.189 Sum_probs=138.9
Q ss_pred cchhccHHHHHHHHHHHhc--CCCCcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCCCChHHHHHHHHHHHh
Q 017884 53 ADVAAHRDIVDTIDRLTSE--NRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFAS 130 (364)
Q Consensus 53 ~~~vg~~~~~~~l~~~~~~--~~~~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 130 (364)
++++|+...+..+...+.. ....+++|+||||+|||++|+++++..... ...++.+++.... .+.+...+..
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~--~~~~v~v~~~~~~-~~l~~~~lfg--- 75 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACSARS--DRPLVTLNCAALN-ESLLESELFG--- 75 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHSSCS--SSCCCEEECSSCC-HHHHHHHHTC---
T ss_pred CCcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhCccc--CCCeEEEeCCCCC-hHHHHHHhcC---
Confidence 3578988888888777664 233459999999999999999999976433 2345667766532 2222221111
Q ss_pred cCccccC----------CccceEEEEEeCCCCCCHHHHHHHHHHHHHhc-----------cCccEEEEeecc-------c
Q 017884 131 TQSFSFG----------VKASVKLVLLDEADAMTKDAQFALRRVIEKYT-----------KNTRFALICNQV-------N 182 (364)
Q Consensus 131 ~~~~~~~----------~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~-----------~~~~~Il~~~~~-------~ 182 (364)
...-.|. ....+++++|||++.++...+..|++++++.. .++++|++||.. .
T Consensus 76 ~~~g~~tg~~~~~~g~~~~a~~g~L~LDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~riI~atn~~l~~~v~~g 155 (304)
T 1ojl_A 76 HEKGAFTGADKRREGRFVEADGGTLFLDEIGDISPLMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAEEVSAG 155 (304)
T ss_dssp CCSSCCC---CCCCCHHHHHTTSEEEEESCTTCCHHHHHHHHHHHHSSBCCBTTBCCCCBCCCEEEEEESSCHHHHHHHT
T ss_pred ccccccCchhhhhcCHHHhcCCCEEEEeccccCCHHHHHHHHHHHhcCEeeecCCcccccCCeEEEEecCccHHHHHHhC
Confidence 0000000 00135699999999999999999999999752 457788888754 2
Q ss_pred cCchhhhccc--eEEEecCCC--hHHHHHHHHHHHH----HcC---CCCCHHHHHHHHHHc-CCCHHHHHHHHHHHHHhc
Q 017884 183 KIIPALQSRC--TRFRFAPLE--PVHVTERLKHVIE----AEG---LDVTEGGLAALVRLC-NGDMRKALNILQSTHMAS 250 (364)
Q Consensus 183 ~l~~~l~sr~--~~i~~~~~~--~~~~~~~l~~~~~----~~~---~~i~~~~~~~l~~~~-~g~~r~a~~~l~~~~~~~ 250 (364)
.+.+.+.+|+ ..+.++|+. .+++..++...+. +.+ ..+++++++.|..++ .||+|.+.+.++.+...+
T Consensus 156 ~fr~~L~~Rl~~~~i~lPpL~eR~edi~~l~~~~l~~~~~~~~~~~~~~s~~a~~~L~~~~wpGnvReL~~~l~~~~~~~ 235 (304)
T 1ojl_A 156 RFRQDLYYRLNVVAIEMPSLRQRREDIPLLADHFLRRFAERNRKVVKGFTPQAMDLLIHYDWPGNIRELENAIERAVVLL 235 (304)
T ss_dssp SSCHHHHHHHSSEEEECCCSGGGGGGHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHHCCCSSHHHHHHHHHHHHHHHC
T ss_pred CcHHHHHhhcCeeEEeccCHHHhHhhHHHHHHHHHHHHHHHhccCccCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHhC
Confidence 4567788886 446788877 4566655554433 333 578999999999987 999999999998877654
Q ss_pred --ccCchHHHHHh
Q 017884 251 --QQITEEAVYLC 261 (364)
Q Consensus 251 --~~i~~~~v~~~ 261 (364)
..|+.+++...
T Consensus 236 ~~~~i~~~~l~~~ 248 (304)
T 1ojl_A 236 TGEYISERELPLA 248 (304)
T ss_dssp CSSSBCGGGSCGG
T ss_pred CCCcccHHhhhhh
Confidence 46777776443
No 63
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.70 E-value=1e-16 Score=152.47 Aligned_cols=188 Identities=20% Similarity=0.273 Sum_probs=134.0
Q ss_pred hccCCCCCcchhccHHHHHHHHHHHhc-------------CCCCcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEe
Q 017884 45 EKYRPQSLADVAAHRDIVDTIDRLTSE-------------NRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELN 111 (364)
Q Consensus 45 ~~~~p~~~~~~vg~~~~~~~l~~~~~~-------------~~~~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~ 111 (364)
+.+++.+|++++|++..+..|..++.. ....++||+||||+|||++|+++++.+ ...++.++
T Consensus 196 ~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~-----~~~fv~vn 270 (489)
T 3hu3_A 196 ESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET-----GAFFFLIN 270 (489)
T ss_dssp HHHTCCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHC-----SSEEEEEE
T ss_pred cccCCCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHh-----CCCEEEEE
Confidence 456788999999999999999888763 223349999999999999999999986 45677777
Q ss_pred CCCC----CC--hHHHHHHHHHHHhcCccccCCccceEEEEEeCCCCCCH-----------HHHHHHHHHHHHhc--cCc
Q 017884 112 ASDD----RG--IDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTK-----------DAQFALRRVIEKYT--KNT 172 (364)
Q Consensus 112 ~~~~----~~--~~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~~-----------~~~~~L~~~le~~~--~~~ 172 (364)
+... .+ ...++..+...... .+.+|+|||+|.+.. ..++.|+..|+... .++
T Consensus 271 ~~~l~~~~~g~~~~~~~~~f~~A~~~---------~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v 341 (489)
T 3hu3_A 271 GPEIMSKLAGESESNLRKAFEEAEKN---------APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHV 341 (489)
T ss_dssp HHHHHTSCTTHHHHHHHHHHHHHHHT---------CSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCE
T ss_pred chHhhhhhcchhHHHHHHHHHHHHhc---------CCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCce
Confidence 5331 11 11222222222111 357999999977753 56788999999643 356
Q ss_pred cEEEEeeccccCchhhhc--cc-eEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC-HHHHHHHHHHHH
Q 017884 173 RFALICNQVNKIIPALQS--RC-TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGD-MRKALNILQSTH 247 (364)
Q Consensus 173 ~~Il~~~~~~~l~~~l~s--r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~-~r~a~~~l~~~~ 247 (364)
++|.+||.+..+.+.+++ |+ ..+.|++|+.++..+++..++...+.. .+..+..++..+.|. .+.+..+++.++
T Consensus 342 ~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~-~~~~l~~la~~t~g~s~~dL~~L~~~A~ 419 (489)
T 3hu3_A 342 IVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLA-DDVDLEQVANETHGHVGADLAALCSEAA 419 (489)
T ss_dssp EEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBC-TTCCHHHHHHTCTTCCHHHHHHHHHHHH
T ss_pred EEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCc-chhhHHHHHHHccCCcHHHHHHHHHHHH
Confidence 677788888889999998 55 579999999999999999887655443 223467788888774 444444444444
No 64
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.68 E-value=1.9e-16 Score=146.86 Aligned_cols=203 Identities=19% Similarity=0.239 Sum_probs=133.8
Q ss_pred chhccHHHHHHHHHHHh----c--------------------------CCCCcEEEeCCCCccHHHHHHHHHHHHcCCCC
Q 017884 54 DVAAHRDIVDTIDRLTS----E--------------------------NRLPHLLLYGPPGTGKTSTILAVARKLYGAQY 103 (364)
Q Consensus 54 ~~vg~~~~~~~l~~~~~----~--------------------------~~~~~lll~G~~G~GKt~la~~l~~~l~~~~~ 103 (364)
.++|++.+++.+...+. . ....+++|+||||+|||++|+++++.+
T Consensus 22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l----- 96 (376)
T 1um8_A 22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHL----- 96 (376)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHT-----
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHh-----
Confidence 47999999998887762 1 123459999999999999999999997
Q ss_pred CCcEEEEeCCCCCCh----HHHHHHHHHHHhcCccccCCccceEEEEEeCCCCCCHH--------------HHHHHHHHH
Q 017884 104 HNMILELNASDDRGI----DVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKD--------------AQFALRRVI 165 (364)
Q Consensus 104 ~~~~~~~~~~~~~~~----~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~--------------~~~~L~~~l 165 (364)
...++.+++...... ......+..........+ ....+++++|||++.+... .++.|+.+|
T Consensus 97 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~~~Ll~~l 175 (376)
T 1um8_A 97 DIPIAISDATSLTEAGYVGEDVENILTRLLQASDWNV-QKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIV 175 (376)
T ss_dssp TCCEEEEEGGGCC--------CTHHHHHHHHHTTTCH-HHHTTSEEEEETGGGC--------------CHHHHHHHHHHH
T ss_pred CCCEEEecchhhhhcCcCCccHHHHHHHHHhhccchh-hhcCCeEEEEcCHHHHhhhcCCCceecccchHHHHHHHHHHh
Confidence 334555655432110 111122222221111000 0113679999999999877 899999999
Q ss_pred HHhc---------------------cCccEEEEeec-----------------------------------------ccc
Q 017884 166 EKYT---------------------KNTRFALICNQ-----------------------------------------VNK 183 (364)
Q Consensus 166 e~~~---------------------~~~~~Il~~~~-----------------------------------------~~~ 183 (364)
+... .++.+|++++. ...
T Consensus 176 e~~~~~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~ 255 (376)
T 1um8_A 176 EGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYG 255 (376)
T ss_dssp HCCEEC---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSGGGCCHHHHHHTT
T ss_pred hccceecccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhhhccchhHHHhhcCHHHHhhcC
Confidence 9541 33455655541 113
Q ss_pred Cchhhhccc-eEEEecCCChHHHHHHHHH----HHH-------H--cCCCCCHHHHHHHHHHcC---CCHHHHHHHHHHH
Q 017884 184 IIPALQSRC-TRFRFAPLEPVHVTERLKH----VIE-------A--EGLDVTEGGLAALVRLCN---GDMRKALNILQST 246 (364)
Q Consensus 184 l~~~l~sr~-~~i~~~~~~~~~~~~~l~~----~~~-------~--~~~~i~~~~~~~l~~~~~---g~~r~a~~~l~~~ 246 (364)
+.+.+.+|+ .++.|+|++.+++..++.. ++. . .++.+++++++.|++++. |++|.+.+.++.+
T Consensus 256 ~~p~l~~R~~~~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~R~L~~~le~~ 335 (376)
T 1um8_A 256 LIPELIGRLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLALERKTGARGLRAIIEDF 335 (376)
T ss_dssp CCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTGGGHHHHHHHH
T ss_pred CChHHhcCCCceeeccCCCHHHHHHHHhhhHHHHHHHHHHHHhhcCceEEECHHHHHHHHHHhcccccCcHHHHHHHHHH
Confidence 567888998 8899999999999988862 211 1 245689999999999864 9999999999876
Q ss_pred HHhc-----c------cCchHHHHHhc
Q 017884 247 HMAS-----Q------QITEEAVYLCT 262 (364)
Q Consensus 247 ~~~~-----~------~i~~~~v~~~~ 262 (364)
.... . .||.++|....
T Consensus 336 ~~~~~~~~~~~~~~~~~i~~~~v~~~~ 362 (376)
T 1um8_A 336 CLDIMFDLPKLKGSEVRITKDCVLKQA 362 (376)
T ss_dssp HHHHHHTGGGGTTSEEEECHHHHTTSS
T ss_pred HHHHHhhccCCCCCEEEEeHHHhcCCC
Confidence 6421 1 47777776644
No 65
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.67 E-value=3.7e-16 Score=157.62 Aligned_cols=185 Identities=21% Similarity=0.301 Sum_probs=134.6
Q ss_pred cchhccHHHHHHHHHHHhcCC-------CC--cEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCCCChHHH-H
Q 017884 53 ADVAAHRDIVDTIDRLTSENR-------LP--HLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVV-R 122 (364)
Q Consensus 53 ~~~vg~~~~~~~l~~~~~~~~-------~~--~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-~ 122 (364)
+.++|++.++..+...+.... .| +++|+||||+|||++|+++++.+...+ ..++.++++........ .
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~--~~~i~i~~s~~~~~~~~~~ 568 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDE--ESMIRIDMSEYMEKHSTSG 568 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCT--TCEEEEEGGGGCSSCCCC-
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCC--cceEEEechhccccccccc
Confidence 568999999988888776321 12 599999999999999999999986543 34566665432111000 1
Q ss_pred HHHHHHHhcCccccCCccceEEEEEeCCCCCCHHHHHHHHHHHHH-----------hccCccEEEEeecccc--------
Q 017884 123 QQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEK-----------YTKNTRFALICNQVNK-------- 183 (364)
Q Consensus 123 ~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~-----------~~~~~~~Il~~~~~~~-------- 183 (364)
..+....... .+++|+|||++.+.+..++.|+++|++ ...++++|++||....
T Consensus 569 ~~l~~~~~~~--------~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~~~~~~~~~~~ 640 (758)
T 3pxi_A 569 GQLTEKVRRK--------PYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVGASEKDKVMGE 640 (758)
T ss_dssp --CHHHHHHC--------SSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESSSTTCCHHHHHH
T ss_pred chhhHHHHhC--------CCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCChhhHHHHHHH
Confidence 1111222111 356999999999999999999999998 3356788999885432
Q ss_pred ----Cchhhhccc-eEEEecCCChHHHHHHHHHHHHHc---------CCCCCHHHHHHHHHH---cCCCHHHHHHHHHHH
Q 017884 184 ----IIPALQSRC-TRFRFAPLEPVHVTERLKHVIEAE---------GLDVTEGGLAALVRL---CNGDMRKALNILQST 246 (364)
Q Consensus 184 ----l~~~l~sr~-~~i~~~~~~~~~~~~~l~~~~~~~---------~~~i~~~~~~~l~~~---~~g~~r~a~~~l~~~ 246 (364)
+.+.+.+|+ .++.|+|++.+++..++...+... .+.++++++++|++. ..|+.|.+.+.++..
T Consensus 641 ~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~R~L~~~i~~~ 720 (758)
T 3pxi_A 641 LKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLMSDQLTKRLKEQDLSIELTDAAKAKVAEEGVDLEYGARPLRRAIQKH 720 (758)
T ss_dssp HHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHGGGCCTTTTTTTHHHHHHHH
T ss_pred HHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEECHHHHHHHHHhCCCCCCCChHHHHHHHHH
Confidence 778899999 899999999999999888776542 457899999999875 368888888888765
Q ss_pred H
Q 017884 247 H 247 (364)
Q Consensus 247 ~ 247 (364)
.
T Consensus 721 v 721 (758)
T 3pxi_A 721 V 721 (758)
T ss_dssp T
T ss_pred H
Confidence 4
No 66
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.65 E-value=9.6e-16 Score=150.46 Aligned_cols=219 Identities=17% Similarity=0.201 Sum_probs=146.7
Q ss_pred hhhccCCCCCcchhccHHHHHHHHHHHhcCCCCcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCCC------
Q 017884 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDR------ 116 (364)
Q Consensus 43 ~~~~~~p~~~~~~vg~~~~~~~l~~~~~~~~~~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~------ 116 (364)
...+|+|..|++++|++.+++.+...+..+ .+++|+||+|+|||+++++++..+.+.......+..+.....
T Consensus 31 ~~~~~rp~~l~~i~G~~~~l~~l~~~i~~g--~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~~p~i~~ 108 (604)
T 3k1j_A 31 EEIEVPEKLIDQVIGQEHAVEVIKTAANQK--RHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDENMPRIKT 108 (604)
T ss_dssp GGSCCCSSHHHHCCSCHHHHHHHHHHHHTT--CCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTTSCEEEE
T ss_pred CcccccccccceEECchhhHhhccccccCC--CEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcccccCCcEEE
Confidence 457899999999999999999999999988 479999999999999999999987543211111111110000
Q ss_pred ---C-hHHHHHHHHH----------------------------------------------HHhcC---c-----ccc--
Q 017884 117 ---G-IDVVRQQIQD----------------------------------------------FASTQ---S-----FSF-- 136 (364)
Q Consensus 117 ---~-~~~~~~~i~~----------------------------------------------~~~~~---~-----~~~-- 136 (364)
+ ...+.+.... ..... + ...
T Consensus 109 ~p~g~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~~~~~~L~G~~~~~~~~~g~~~~g~ 188 (604)
T 3k1j_A 109 VPACQGRRIVEKYREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDATGAHAGALLGDVRHDPFQSGGLGTPA 188 (604)
T ss_dssp EETTHHHHHHHHHHHHHHHHTCC-----------CCCEEEECCTTCSSCCEEECTTCCHHHHHCEECCCCC----CCCCG
T ss_pred EecchHHHHHHHHHHhhccchhhhhhcccccccccccceeeccccCCCCCEEEcCCCCHHhcCceEEechhhcCCccccc
Confidence 0 0011100000 00000 0 000
Q ss_pred --------CCccceEEEEEeCCCCCCHHHHHHHHHHHHHh---------------------ccCccEEEEeecc--ccCc
Q 017884 137 --------GVKASVKLVLLDEADAMTKDAQFALRRVIEKY---------------------TKNTRFALICNQV--NKII 185 (364)
Q Consensus 137 --------~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~---------------------~~~~~~Il~~~~~--~~l~ 185 (364)
-....+++++|||++.+.+..++.|+++|++. +.++++|+++|.. ..+.
T Consensus 189 ~~~i~~g~~~~a~~gvL~LDEi~~l~~~~q~~Ll~~Le~~~~~~~g~~~~~~~~~l~~~~~p~~~~vI~atn~~~~~~l~ 268 (604)
T 3k1j_A 189 HERVEPGMIHRAHKGVLFIDEIATLSLKMQQSLLTAMQEKKFPITGQSEMSSGAMVRTEPVPCDFVLVAAGNLDTVDKMH 268 (604)
T ss_dssp GGGEECCHHHHTTTSEEEETTGGGSCHHHHHHHHHHHHHSEECCBCSCTTSGGGGCBCSCEECCCEEEEEECHHHHHHSC
T ss_pred cccccCceeeecCCCEEEEechhhCCHHHHHHHHHHHHcCcEEecccccccccccCCCCccceeEEEEEecCHHHHhhcC
Confidence 00113569999999999999999999999953 2356788888865 5799
Q ss_pred hhhhccce----EEEecCCC---hHHHHHHHHHHHHHc-----CCCCCHHHHHHHHHHc---CC-------CHHHHHHHH
Q 017884 186 PALQSRCT----RFRFAPLE---PVHVTERLKHVIEAE-----GLDVTEGGLAALVRLC---NG-------DMRKALNIL 243 (364)
Q Consensus 186 ~~l~sr~~----~i~~~~~~---~~~~~~~l~~~~~~~-----~~~i~~~~~~~l~~~~---~g-------~~r~a~~~l 243 (364)
+++.+||. .+.|++.. ++.+..++...++.. ...++++++..|++++ .| ++|.+.+++
T Consensus 269 ~~l~~R~~v~~i~i~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ls~eAl~~Li~~~~r~~g~r~~l~~~~R~l~~ll 348 (604)
T 3k1j_A 269 PALRSRIRGYGYEVYMRTTMPDTIENRRKLVQFVAQEVKRDGKIPHFTKEAVEEIVREAQKRAGRKGHLTLRLRDLGGIV 348 (604)
T ss_dssp HHHHHHHHHHSEEEECCSEEECCHHHHHHHHHHHHHHHHHHCSSCCBBHHHHHHHHHHHHHTTCSTTEEECCHHHHHHHH
T ss_pred HHHHHHhhccceEeeccccccCCHHHHHHHHHHHHHHHhhccCcccCCHHHHHHHHHHHhhhhccccccccCHHHHHHHH
Confidence 99999984 56664432 344565655544432 2578999999999876 55 699999999
Q ss_pred HHHHHhc-----ccCchHHHHHhcC
Q 017884 244 QSTHMAS-----QQITEEAVYLCTG 263 (364)
Q Consensus 244 ~~~~~~~-----~~i~~~~v~~~~~ 263 (364)
+.+...+ ..|+.++|.+++.
T Consensus 349 r~A~~~A~~~~~~~I~~edv~~A~~ 373 (604)
T 3k1j_A 349 RAAGDIAVKKGKKYVEREDVIEAVK 373 (604)
T ss_dssp HHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred HHHHHHHHhcCcccccHHHHHHHHH
Confidence 7655332 4788888887763
No 67
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.65 E-value=1.6e-15 Score=153.14 Aligned_cols=182 Identities=18% Similarity=0.231 Sum_probs=133.5
Q ss_pred cchhccHHHHHHHHHHHhcC--------C-CCcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCCCC------
Q 017884 53 ADVAAHRDIVDTIDRLTSEN--------R-LPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRG------ 117 (364)
Q Consensus 53 ~~~vg~~~~~~~l~~~~~~~--------~-~~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~------ 117 (364)
..++|++.++..+...+... + ..+++|+||||+|||++|+++++.+ ...++.++++....
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l-----~~~~~~i~~s~~~~~~~~~~ 532 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL-----GIELLRFDMSEYMERHTVSR 532 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHH-----TCEEEEEEGGGCSSSSCCSS
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHh-----cCCEEEEechhhcchhhHhh
Confidence 45889999998887776532 1 1259999999999999999999998 24556666543211
Q ss_pred --------hH-HHHHHHHHHHhcCccccCCccceEEEEEeCCCCCCHHHHHHHHHHHHHhc-----------cCccEEEE
Q 017884 118 --------ID-VVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYT-----------KNTRFALI 177 (364)
Q Consensus 118 --------~~-~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~-----------~~~~~Il~ 177 (364)
.. .....+...... ..+.||+|||++.+.++.++.|+++|++.. .++.+|++
T Consensus 533 l~g~~~g~~g~~~~~~l~~~~~~--------~~~~vl~lDEi~~~~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~iI~t 604 (758)
T 1r6b_X 533 LIGAPPGYVGFDQGGLLTDAVIK--------HPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMT 604 (758)
T ss_dssp SCCCCSCSHHHHHTTHHHHHHHH--------CSSEEEEEETGGGSCHHHHHHHHHHHHHSEEEETTTEEEECTTEEEEEE
T ss_pred hcCCCCCCcCccccchHHHHHHh--------CCCcEEEEeCccccCHHHHHHHHHHhcCcEEEcCCCCEEecCCeEEEEe
Confidence 00 000111222211 136899999999999999999999999753 35668888
Q ss_pred eeccc-------------------------cCchhhhccc-eEEEecCCChHHHHHHHHHHHHHc---------CCCCCH
Q 017884 178 CNQVN-------------------------KIIPALQSRC-TRFRFAPLEPVHVTERLKHVIEAE---------GLDVTE 222 (364)
Q Consensus 178 ~~~~~-------------------------~l~~~l~sr~-~~i~~~~~~~~~~~~~l~~~~~~~---------~~~i~~ 222 (364)
+|... .+.+++.+|+ .++.|+|++.+++..++...+.+. .+.+++
T Consensus 605 sN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~ 684 (758)
T 1r6b_X 605 TNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQVQLDQKGVSLEVSQ 684 (758)
T ss_dssp ECSSCC-----------------CHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHHHHHHHTTEEEEECH
T ss_pred cCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHhhCCcceeeCCCCHHHHHHHHHHHHHHHHHHHHHCCcEEEeCH
Confidence 87633 5678899999 789999999999999998877632 356899
Q ss_pred HHHHHHHHHc---CCCHHHHHHHHHHHH
Q 017884 223 GGLAALVRLC---NGDMRKALNILQSTH 247 (364)
Q Consensus 223 ~~~~~l~~~~---~g~~r~a~~~l~~~~ 247 (364)
++++.|+++. +++.|.+.+.++...
T Consensus 685 ~a~~~l~~~~~~~~~g~R~l~~~i~~~~ 712 (758)
T 1r6b_X 685 EARNWLAEKGYDRAMGARPMARVIQDNL 712 (758)
T ss_dssp HHHHHHHHHHCBTTTBTTTHHHHHHHHH
T ss_pred HHHHHHHHhCCCcCCCchHHHHHHHHHH
Confidence 9999999876 445888888776654
No 68
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.65 E-value=1.6e-15 Score=144.00 Aligned_cols=207 Identities=21% Similarity=0.270 Sum_probs=138.5
Q ss_pred hhhccCCCCCcchhccHHHHHHHHHHHhc-----------CCCC-cEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEE
Q 017884 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSE-----------NRLP-HLLLYGPPGTGKTSTILAVARKLYGAQYHNMILEL 110 (364)
Q Consensus 43 ~~~~~~p~~~~~~vg~~~~~~~l~~~~~~-----------~~~~-~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~ 110 (364)
|.+. .+.+|++++|+++++..+++.+.. ...+ +++|+||||+|||+++++++..+ ...++.+
T Consensus 22 ~~~~-~~~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~-----~~~~i~i 95 (499)
T 2dhr_A 22 LTEA-PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA-----RVPFITA 95 (499)
T ss_dssp ECSC-CCCCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHT-----TCCEEEE
T ss_pred eccC-CCCCHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHh-----CCCEEEE
Confidence 4444 677999999999999988777542 1223 39999999999999999999986 2456677
Q ss_pred eCCCCC--ChHHHHHHHHHHHhcCccccCCccceEEEEEeCCCCCCH-----------H---HHHHHHHHHHHhc--cCc
Q 017884 111 NASDDR--GIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTK-----------D---AQFALRRVIEKYT--KNT 172 (364)
Q Consensus 111 ~~~~~~--~~~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~~-----------~---~~~~L~~~le~~~--~~~ 172 (364)
++.... ........+....+... ...+.+++|||+|.+.. . ..+.|+..|+... ...
T Consensus 96 ~g~~~~~~~~g~~~~~v~~lfq~a~-----~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~~~v 170 (499)
T 2dhr_A 96 SGSDFVEMFVGVGAARVRDLFETAK-----RHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAI 170 (499)
T ss_dssp EGGGGTSSCTTHHHHHHHHHTTTSS-----SSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSSCCC
T ss_pred ehhHHHHhhhhhHHHHHHHHHHHHH-----hcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccCccE
Confidence 765421 11222233333332211 01357999999988742 1 2234444444322 233
Q ss_pred cEEEEeeccccCchhhhcc--c-eEEEecCCChHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHcCCCH-HHHHHHHHHHH
Q 017884 173 RFALICNQVNKIIPALQSR--C-TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGG-LAALVRLCNGDM-RKALNILQSTH 247 (364)
Q Consensus 173 ~~Il~~~~~~~l~~~l~sr--~-~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~-~~~l~~~~~g~~-r~a~~~l~~~~ 247 (364)
.++.++|.++.+++++.++ + ..+.+++|+.++..++++..++ +..++++. +..++..+.|+. +.+.+.++.++
T Consensus 171 iviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~--~~~l~~dv~l~~lA~~t~G~~gadL~~lv~~Aa 248 (499)
T 2dhr_A 171 VVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHAR--GKPLAEDVDLALLAKRTPGFVGADLENLLNEAA 248 (499)
T ss_dssp EEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTS--SSCCCCSSTTHHHHTTSCSCCHHHHHHHHHHHH
T ss_pred EEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHh--cCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 4555668888889999884 4 5799999999999998876654 44555443 788999998887 77777777655
Q ss_pred Hhc-----ccCchHHHHHhc
Q 017884 248 MAS-----QQITEEAVYLCT 262 (364)
Q Consensus 248 ~~~-----~~i~~~~v~~~~ 262 (364)
..+ ..|+.+++..++
T Consensus 249 ~~A~~~~~~~It~~dl~~al 268 (499)
T 2dhr_A 249 LLAAREGRRKITMKDLEEAA 268 (499)
T ss_dssp HHHTTTCCSSCCSHHHHHHH
T ss_pred HHHHHhCCCccCHHHHHHHH
Confidence 432 368888877654
No 69
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.64 E-value=9.7e-15 Score=127.92 Aligned_cols=206 Identities=21% Similarity=0.250 Sum_probs=131.3
Q ss_pred hccCCCCCcchhccHHHHHHHHHHHhc-----------CC-CCcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeC
Q 017884 45 EKYRPQSLADVAAHRDIVDTIDRLTSE-----------NR-LPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNA 112 (364)
Q Consensus 45 ~~~~p~~~~~~vg~~~~~~~l~~~~~~-----------~~-~~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~ 112 (364)
....+.+|++++|.++++..+++.... .. .++++|+||+|+|||+++++++..+. ..++.+++
T Consensus 8 ~~~~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~-----~~~i~~~~ 82 (254)
T 1ixz_A 8 TEAPKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR-----VPFITASG 82 (254)
T ss_dssp CCCCSCCGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEH
T ss_pred cCCCCCCHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhC-----CCEEEeeH
Confidence 345567899999999888877766542 11 23489999999999999999999863 34455554
Q ss_pred CCC--CChHHHHHHHHHHHhcCccccCCccceEEEEEeCCCCCCH--------------HHHHHHHHHHHHhccC--ccE
Q 017884 113 SDD--RGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTK--------------DAQFALRRVIEKYTKN--TRF 174 (364)
Q Consensus 113 ~~~--~~~~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~~--------------~~~~~L~~~le~~~~~--~~~ 174 (364)
... .........+....+... . ..+.++++||++.+.. ...+.++..++..... ..+
T Consensus 83 ~~~~~~~~~~~~~~i~~~~~~~~---~--~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~ 157 (254)
T 1ixz_A 83 SDFVEMFVGVGAARVRDLFETAK---R--HAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVV 157 (254)
T ss_dssp HHHHHSCTTHHHHHHHHHHHHHT---T--SSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEE
T ss_pred HHHHHHHhhHHHHHHHHHHHHHH---h--cCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCEEE
Confidence 211 001111122222222111 0 0357999999976631 1133444445433222 334
Q ss_pred EEEeeccccCchhhhc--cc-eEEEecCCChHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHcCCCH-HHHHHHHHHHHHh
Q 017884 175 ALICNQVNKIIPALQS--RC-TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGG-LAALVRLCNGDM-RKALNILQSTHMA 249 (364)
Q Consensus 175 Il~~~~~~~l~~~l~s--r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~-~~~l~~~~~g~~-r~a~~~l~~~~~~ 249 (364)
+.+++.++.+++++.+ |+ ..+.+++|+.++..++++..++ +..++++. +..++..+.|+. +.+.+.++.+...
T Consensus 158 ~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~--~~~~~~~~~~~~la~~~~G~~~~dl~~~~~~a~~~ 235 (254)
T 1ixz_A 158 MAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHAR--GKPLAEDVDLALLAKRTPGFVGADLENLLNEAALL 235 (254)
T ss_dssp EEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHT--TSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHH
T ss_pred EEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHc--CCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 5566888889999988 55 6799999999999999987664 44454443 788999998865 6666666655432
Q ss_pred c-----ccCchHHHHHhc
Q 017884 250 S-----QQITEEAVYLCT 262 (364)
Q Consensus 250 ~-----~~i~~~~v~~~~ 262 (364)
+ ..|+.+++.+++
T Consensus 236 a~~~~~~~I~~~dl~~a~ 253 (254)
T 1ixz_A 236 AAREGRRKITMKDLEEAA 253 (254)
T ss_dssp HHHTTCSSBCHHHHHHHT
T ss_pred HHHhcCCCcCHHHHHHHh
Confidence 2 368888877654
No 70
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.63 E-value=1.2e-14 Score=136.20 Aligned_cols=218 Identities=17% Similarity=0.241 Sum_probs=141.5
Q ss_pred ChhhccCCCCCcchhccHHHHHHHHHHH-hc---C---CCCcEEE--eCCCCccHHHHHHHHHHHHcCC----CCCCcEE
Q 017884 42 PWVEKYRPQSLADVAAHRDIVDTIDRLT-SE---N---RLPHLLL--YGPPGTGKTSTILAVARKLYGA----QYHNMIL 108 (364)
Q Consensus 42 ~~~~~~~p~~~~~~vg~~~~~~~l~~~~-~~---~---~~~~lll--~G~~G~GKt~la~~l~~~l~~~----~~~~~~~ 108 (364)
++...|.| +.++|++..++.|...+ .. + ...+++| +||+|+|||++++.+++.+... +....++
T Consensus 14 ~~~~~~~p---~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~ 90 (412)
T 1w5s_A 14 VFDENYIP---PELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQA 90 (412)
T ss_dssp GGSTTCCC---SSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred hcCCccCC---CCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEE
Confidence 34445555 67899999999888877 42 2 3345888 9999999999999999887431 1234566
Q ss_pred EEeCCCCCChHHHH-HHHHHHHhcCcc--------------ccCCccceEEEEEeCCCCCCH------HHHHHHHHHHHH
Q 017884 109 ELNASDDRGIDVVR-QQIQDFASTQSF--------------SFGVKASVKLVLLDEADAMTK------DAQFALRRVIEK 167 (364)
Q Consensus 109 ~~~~~~~~~~~~~~-~~i~~~~~~~~~--------------~~~~~~~~~viiiDe~~~l~~------~~~~~L~~~le~ 167 (364)
.+++........+. ..+.......+. .+....++.+|+|||+|.+.. +....|++++..
T Consensus 91 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~ 170 (412)
T 1w5s_A 91 YVNAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEE 170 (412)
T ss_dssp EEEGGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHh
Confidence 67653322222221 111111100000 000011467999999999853 556667777776
Q ss_pred hc-----cCccEEEEeeccc---cCc---hhhhccc-eEEEecCCChHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcC
Q 017884 168 YT-----KNTRFALICNQVN---KII---PALQSRC-TRFRFAPLEPVHVTERLKHVIEAEG--LDVTEGGLAALVRLCN 233 (364)
Q Consensus 168 ~~-----~~~~~Il~~~~~~---~l~---~~l~sr~-~~i~~~~~~~~~~~~~l~~~~~~~~--~~i~~~~~~~l~~~~~ 233 (364)
.+ ..+.+|++++.+. .+. +.+.+++ ..+.|+|++.+++.+++...+...+ ..++++++..+++.++
T Consensus 171 ~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~ 250 (412)
T 1w5s_A 171 IPSRDGVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYG 250 (412)
T ss_dssp SCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHC
T ss_pred cccCCCCceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHH
Confidence 54 4455777776543 233 4555554 4499999999999999988776433 3578999999999999
Q ss_pred ------CCHHHHHHHHHHHHHhc-----ccCchHHHHHhc
Q 017884 234 ------GDMRKALNILQSTHMAS-----QQITEEAVYLCT 262 (364)
Q Consensus 234 ------g~~r~a~~~l~~~~~~~-----~~i~~~~v~~~~ 262 (364)
|+++.+..++..+...+ ..++.+++..++
T Consensus 251 ~~~~~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~ 290 (412)
T 1w5s_A 251 EDKGGDGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAV 290 (412)
T ss_dssp GGGTSCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHH
T ss_pred HhccCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Confidence 99999999887654321 357777765443
No 71
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.61 E-value=2.4e-14 Score=127.15 Aligned_cols=204 Identities=22% Similarity=0.249 Sum_probs=130.0
Q ss_pred cCCCCCcchhccHHHHHHHHHHHhcC-----------C-CCcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCC
Q 017884 47 YRPQSLADVAAHRDIVDTIDRLTSEN-----------R-LPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASD 114 (364)
Q Consensus 47 ~~p~~~~~~vg~~~~~~~l~~~~~~~-----------~-~~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~ 114 (364)
..+.+|++++|.++++..+++....- . .++++|+||+|+|||+++++++..+. ..++.+++..
T Consensus 34 ~~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~-----~~~i~~~~~~ 108 (278)
T 1iy2_A 34 APKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSD 108 (278)
T ss_dssp CCCCCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEHHH
T ss_pred CCCCCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcC-----CCEEEecHHH
Confidence 35678999999999988877665421 1 23489999999999999999999873 3445555422
Q ss_pred C--CChHHHHHHHHHHHhcCccccCCccceEEEEEeCCCCCC-----------HHHHHHHHHHHHHhc---c--CccEEE
Q 017884 115 D--RGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMT-----------KDAQFALRRVIEKYT---K--NTRFAL 176 (364)
Q Consensus 115 ~--~~~~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~-----------~~~~~~L~~~le~~~---~--~~~~Il 176 (364)
. .........+....+... .. .+.++++||++.+. ......+..++.... . ...++.
T Consensus 109 ~~~~~~~~~~~~i~~~~~~~~---~~--~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~~~i~~a 183 (278)
T 1iy2_A 109 FVEMFVGVGAARVRDLFETAK---RH--APCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMA 183 (278)
T ss_dssp HHHSTTTHHHHHHHHHHHHHH---TS--CSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTCCEEEEE
T ss_pred HHHHHhhHHHHHHHHHHHHHH---hc--CCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCCCEEEEE
Confidence 1 001111122222221110 00 25799999997652 122333444444332 1 234455
Q ss_pred EeeccccCchhhhc--cc-eEEEecCCChHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHcCCCH-HHHHHHHHHHHHhc-
Q 017884 177 ICNQVNKIIPALQS--RC-TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGG-LAALVRLCNGDM-RKALNILQSTHMAS- 250 (364)
Q Consensus 177 ~~~~~~~l~~~l~s--r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~-~~~l~~~~~g~~-r~a~~~l~~~~~~~- 250 (364)
+++.++.+++++.+ |+ ..+.|++|+.++..+++...++ +..++++. +..++..+.|+. +.+.+.++.+...+
T Consensus 184 ~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~--~~~~~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~ 261 (278)
T 1iy2_A 184 ATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHAR--GKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAA 261 (278)
T ss_dssp EESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHT--TSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHH
T ss_pred ecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHc--cCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 66888889999887 55 6799999999999999987764 34454443 788999998876 56666666554322
Q ss_pred ----ccCchHHHHHhc
Q 017884 251 ----QQITEEAVYLCT 262 (364)
Q Consensus 251 ----~~i~~~~v~~~~ 262 (364)
..|+.+++.+++
T Consensus 262 ~~~~~~I~~~dl~~a~ 277 (278)
T 1iy2_A 262 REGRRKITMKDLEEAA 277 (278)
T ss_dssp HTTCCSBCHHHHHHHT
T ss_pred HhCCCCcCHHHHHHHh
Confidence 368888887654
No 72
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.60 E-value=1.3e-15 Score=155.23 Aligned_cols=187 Identities=18% Similarity=0.261 Sum_probs=137.6
Q ss_pred CcchhccHHHHHHHHHHHhcCC--------C-CcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCCCChHHHH
Q 017884 52 LADVAAHRDIVDTIDRLTSENR--------L-PHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVR 122 (364)
Q Consensus 52 ~~~~vg~~~~~~~l~~~~~~~~--------~-~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 122 (364)
++.++|++..+..+...+.... + .+++|+||+|+|||++|+++++.+.+.+ ..++.++++.........
T Consensus 557 ~~~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~--~~~i~i~~~~~~~~~~~s 634 (854)
T 1qvr_A 557 HKRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTE--EAMIRIDMTEYMEKHAVS 634 (854)
T ss_dssp HHHSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSG--GGEEEECTTTCCSSGGGG
T ss_pred hcccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCC--CcEEEEechhccchhHHH
Confidence 3568999999998888776431 1 2589999999999999999999986543 456677765432211000
Q ss_pred ---------------HHHHHHHhcCccccCCccceEEEEEeCCCCCCHHHHHHHHHHHHHhc-----------cCccEEE
Q 017884 123 ---------------QQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYT-----------KNTRFAL 176 (364)
Q Consensus 123 ---------------~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~-----------~~~~~Il 176 (364)
..+...... ..+++|+|||++.+..+.++.|+++|++.. .++.+|+
T Consensus 635 ~l~g~~~~~~G~~~~g~l~~~~~~--------~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~g~~vd~~~~iiI~ 706 (854)
T 1qvr_A 635 RLIGAPPGYVGYEEGGQLTEAVRR--------RPYSVILFDEIEKAHPDVFNILLQILDDGRLTDSHGRTVDFRNTVIIL 706 (854)
T ss_dssp GC--------------CHHHHHHH--------CSSEEEEESSGGGSCHHHHHHHHHHHTTTEECCSSSCCEECTTEEEEE
T ss_pred HHcCCCCCCcCccccchHHHHHHh--------CCCeEEEEecccccCHHHHHHHHHHhccCceECCCCCEeccCCeEEEE
Confidence 111111111 136799999999999999999999999763 3556888
Q ss_pred Eeec--------------------------cccCchhhhccc-eEEEecCCChHHHHHHHHHHHHHc---------CCCC
Q 017884 177 ICNQ--------------------------VNKIIPALQSRC-TRFRFAPLEPVHVTERLKHVIEAE---------GLDV 220 (364)
Q Consensus 177 ~~~~--------------------------~~~l~~~l~sr~-~~i~~~~~~~~~~~~~l~~~~~~~---------~~~i 220 (364)
+||. ...+.+.+.+|+ .++.|.|++.+++..++...+.+. .+.+
T Consensus 707 tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~Rl~~~i~~~pl~~edi~~i~~~~l~~~~~~~~~~~~~~~~ 786 (854)
T 1qvr_A 707 TSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQLSYLRARLAEKRISLEL 786 (854)
T ss_dssp ECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHHTCSBCCBCCCCCHHHHHHHHHHHHHHHHHHHHTTTCEEEE
T ss_pred ecCcChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHHhcCeEEeCCCCCHHHHHHHHHHHHHHHHHHHHhCCceEEE
Confidence 8885 124567788998 788999999999999887766521 3468
Q ss_pred CHHHHHHHHHHc---CCCHHHHHHHHHHHHH
Q 017884 221 TEGGLAALVRLC---NGDMRKALNILQSTHM 248 (364)
Q Consensus 221 ~~~~~~~l~~~~---~g~~r~a~~~l~~~~~ 248 (364)
++++++.|++++ .|++|.+.+.++....
T Consensus 787 ~~~a~~~L~~~~~~~~gn~R~L~~~i~~~~~ 817 (854)
T 1qvr_A 787 TEAAKDFLAERGYDPVFGARPLRRVIQRELE 817 (854)
T ss_dssp CHHHHHHHHHHHCBTTTBTSTHHHHHHHHTH
T ss_pred CHHHHHHHHHcCCCCCCChHHHHHHHHHHHH
Confidence 999999999876 4999999999887653
No 73
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.58 E-value=3.2e-15 Score=137.95 Aligned_cols=189 Identities=22% Similarity=0.265 Sum_probs=125.3
Q ss_pred chhccHHHHHHHHHHHh-------------cC--CCCcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCCCCh
Q 017884 54 DVAAHRDIVDTIDRLTS-------------EN--RLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGI 118 (364)
Q Consensus 54 ~~vg~~~~~~~l~~~~~-------------~~--~~~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~ 118 (364)
.++|++.++..+...+. .. ...+++|+||||||||++|+++++.+ ...++.++++.....
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~-----~~~~~~~~~~~l~~~ 90 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLL-----DVPFTMADATTLTEA 90 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHT-----TCCEEEEEHHHHTTC
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHc-----CCCEEEechHHhccc
Confidence 36999999999888773 11 23459999999999999999999997 455667766432211
Q ss_pred H----HHHHHHHHHHhcCccccCCccceEEEEEeCCCCCCHH--------------HHHHHHHHHHHh------------
Q 017884 119 D----VVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKD--------------AQFALRRVIEKY------------ 168 (364)
Q Consensus 119 ~----~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~--------------~~~~L~~~le~~------------ 168 (364)
. .....+.......+..+ ....+.+|+|||++.+... .++.|+++|+..
T Consensus 91 ~~~g~~~~~~~~~~~~~~~~~~-~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~leg~~~~~~~~~~~~~ 169 (363)
T 3hws_A 91 GYVGEDVENIIQKLLQKCDYDV-QKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKH 169 (363)
T ss_dssp HHHHHHHTHHHHHHHHHTTTCH-HHHHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHHHHHCC------------
T ss_pred ccccccHHHHHHHHHHHhhhhH-HhcCCcEEEEeChhhhcccccccccccccchHHHHHHHHHHhcCceeeccCcccccc
Confidence 1 11222233222211100 1114679999999988755 899999999921
Q ss_pred ---------ccCccEEEEeecc----------cc-----------------------------------Cchhhhccc-e
Q 017884 169 ---------TKNTRFALICNQV----------NK-----------------------------------IIPALQSRC-T 193 (364)
Q Consensus 169 ---------~~~~~~Il~~~~~----------~~-----------------------------------l~~~l~sr~-~ 193 (364)
..+..||++++.. .+ +.+.+.+|+ .
T Consensus 170 ~~~~~~~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l~~R~~~ 249 (363)
T 3hws_A 170 PQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIGRLPV 249 (363)
T ss_dssp ----CCCCCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHHHHHHHTCCHHHHTTCCE
T ss_pred CCCceEEEECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHHHHHHcCCCHHHhcccCe
Confidence 1233445554421 11 678888998 5
Q ss_pred EEEecCCChHHHHHHHHH----HH-------HHcC--CCCCHHHHHHHHHHc---CCCHHHHHHHHHHHHH
Q 017884 194 RFRFAPLEPVHVTERLKH----VI-------EAEG--LDVTEGGLAALVRLC---NGDMRKALNILQSTHM 248 (364)
Q Consensus 194 ~i~~~~~~~~~~~~~l~~----~~-------~~~~--~~i~~~~~~~l~~~~---~g~~r~a~~~l~~~~~ 248 (364)
++.|.|++.+++.+++.. .. ...+ +.+++++++.|++.+ +++.|.+.+.++....
T Consensus 250 ~~~~~pl~~~~~~~I~~~~~~~l~~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~~~ie~~~~ 320 (363)
T 3hws_A 250 VATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLRSIVEAALL 320 (363)
T ss_dssp EEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTTTTHHHHHHHHHH
T ss_pred eeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHhhcCCccCchHHHHHHHHHHH
Confidence 566999999998887764 22 2223 457999999999653 6778888888876654
No 74
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.58 E-value=1.6e-13 Score=130.53 Aligned_cols=201 Identities=13% Similarity=0.119 Sum_probs=128.7
Q ss_pred cchhccHHHHHHHHHHHhcCCCCcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCCCChHHHHHH--HHHHHh
Q 017884 53 ADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQ--IQDFAS 130 (364)
Q Consensus 53 ~~~vg~~~~~~~l~~~~~~~~~~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--i~~~~~ 130 (364)
..++|+++++..+...+..+ .|++|+||||+|||++|+++++.+.. ...+...++.. ...+.+... ......
T Consensus 22 ~~ivGq~~~i~~l~~al~~~--~~VLL~GpPGtGKT~LAraLa~~l~~---~~~f~~~~~~~-~t~~dL~G~~~~~~~~~ 95 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALSG--ESVFLLGPPGIAKSLIARRLKFAFQN---ARAFEYLMTRF-STPEEVFGPLSIQALKD 95 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHHT--CEEEEECCSSSSHHHHHHHGGGGBSS---CCEEEEECCTT-CCHHHHHCCBC------
T ss_pred hhhHHHHHHHHHHHHHHhcC--CeeEeecCchHHHHHHHHHHHHHHhh---hhHHHHHHHhc-CCHHHhcCcccHHHHhh
Confidence 35889999999988888776 57999999999999999999998632 11222333321 111111110 000000
Q ss_pred cCcc-ccCC--ccceEEEEEeCCCCCCHHHHHHHHHHHHHhc---------cCccE-EEEeecccc---Cchhhhccc-e
Q 017884 131 TQSF-SFGV--KASVKLVLLDEADAMTKDAQFALRRVIEKYT---------KNTRF-ALICNQVNK---IIPALQSRC-T 193 (364)
Q Consensus 131 ~~~~-~~~~--~~~~~viiiDe~~~l~~~~~~~L~~~le~~~---------~~~~~-Il~~~~~~~---l~~~l~sr~-~ 193 (364)
...+ .+.. ...+.|++|||++.+++..++.|+..|++.. ....+ |++||.... ..+++.+|+ .
T Consensus 96 ~g~~~~~~~g~l~~~~IL~IDEI~r~~~~~q~~LL~~lee~~v~i~G~~~~~~~~~iI~ATN~lpe~~~~~~aLldRF~~ 175 (500)
T 3nbx_X 96 EGRYERLTSGYLPEAEIVFLDEIWKAGPAILNTLLTAINERQFRNGAHVEKIPMRLLVAASNELPEADSSLEALYDRMLI 175 (500)
T ss_dssp ----CBCCTTSGGGCSEEEEESGGGCCHHHHHHHHHHHHSSEEECSSSEEECCCCEEEEEESSCCCTTCTTHHHHTTCCE
T ss_pred chhHHhhhccCCCcceeeeHHhHhhhcHHHHHHHHHHHHHHhccCCCCcCCcchhhhhhccccCCCccccHHHHHHHHHH
Confidence 0000 0111 1135699999999999999999999998531 12334 667764332 445888997 5
Q ss_pred EEEecCCCh-HHHHHHHHHHH-----------------------HHcCCCCCHHHHHHHHHHc----------CCCHHHH
Q 017884 194 RFRFAPLEP-VHVTERLKHVI-----------------------EAEGLDVTEGGLAALVRLC----------NGDMRKA 239 (364)
Q Consensus 194 ~i~~~~~~~-~~~~~~l~~~~-----------------------~~~~~~i~~~~~~~l~~~~----------~g~~r~a 239 (364)
.+.+++|+. ++...++.... ...++.++++.++++++.. +.+.|.+
T Consensus 176 ~i~v~~p~~~ee~~~IL~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~v~v~d~v~e~i~~l~~~lr~~r~~~~iS~R~~ 255 (500)
T 3nbx_X 176 RLWLDKVQDKANFRSMLTSQQDENDNPVPDALQVTDEEYERWQKEIGEITLPDHVFELIFMLRQQLDKLPDAPYVSDRRW 255 (500)
T ss_dssp EEECCSCCCHHHHHHHHTCCCCTTSCCSCTTTSBCHHHHHHHHHHHTTCBCCHHHHHHHHHHHHHHHHCSSSCCCCHHHH
T ss_pred HHHHHHhhhhhhHHHHHhcccccCCCCCCccceecHHHHHHHHhcCCcccCchHHHHHHHHHHHHhhcCCCCCccchhHH
Confidence 588888887 55666665432 1236778999999998776 5688887
Q ss_pred HHHHHHHHHhc-----ccCchHHHH
Q 017884 240 LNILQSTHMAS-----QQITEEAVY 259 (364)
Q Consensus 240 ~~~l~~~~~~~-----~~i~~~~v~ 259 (364)
+..+..+...+ ..++.++|.
T Consensus 256 ~~llr~A~A~A~l~gr~~Vt~eDv~ 280 (500)
T 3nbx_X 256 KKAIRLLQASAFFSGRSAVAPVDLI 280 (500)
T ss_dssp HHHHHHHHHHHHHTTCSBCCGGGGG
T ss_pred HHHHHHHHHHHhhcCCccccchHHH
Confidence 77765443322 378888887
No 75
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.58 E-value=1.6e-14 Score=143.72 Aligned_cols=172 Identities=22% Similarity=0.325 Sum_probs=122.9
Q ss_pred CCCCCcchhccHHHHHHHHHHHhc-----------C-CCC-cEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCC
Q 017884 48 RPQSLADVAAHRDIVDTIDRLTSE-----------N-RLP-HLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASD 114 (364)
Q Consensus 48 ~p~~~~~~vg~~~~~~~l~~~~~~-----------~-~~~-~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~ 114 (364)
...+|+++.|.++.++.|+..+.- + .+| ++|||||||||||++|+++++++ ...++.+++.+
T Consensus 199 ~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~el-----g~~~~~v~~~~ 273 (806)
T 3cf2_A 199 NEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET-----GAFFFLINGPE 273 (806)
T ss_dssp SSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTT-----TCEEEEEEHHH
T ss_pred CCCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHh-----CCeEEEEEhHH
Confidence 346899999999999988887641 1 223 39999999999999999999987 55677777543
Q ss_pred C----CC--hHHHHHHHHHHHhcCccccCCccceEEEEEeCCCCCCH-----------HHHHHHHHHHHHhcc--CccEE
Q 017884 115 D----RG--IDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTK-----------DAQFALRRVIEKYTK--NTRFA 175 (364)
Q Consensus 115 ~----~~--~~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~~-----------~~~~~L~~~le~~~~--~~~~I 175 (364)
. .+ ...++..+..... ..+.||+|||+|.+.+ ...+.|+..|+.... ++.+|
T Consensus 274 l~sk~~gese~~lr~lF~~A~~---------~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VI 344 (806)
T 3cf2_A 274 IMSKLAGESESNLRKAFEEAEK---------NAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVM 344 (806)
T ss_dssp HHSSCTTHHHHHHHHHHHHHTT---------SCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEE
T ss_pred hhcccchHHHHHHHHHHHHHHH---------cCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEEE
Confidence 1 11 1123332222211 1478999999999953 235677888887543 45677
Q ss_pred EEeeccccCchhhhc--cc-eEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Q 017884 176 LICNQVNKIIPALQS--RC-TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNG 234 (364)
Q Consensus 176 l~~~~~~~l~~~l~s--r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g 234 (364)
.+||.++.+++++++ |+ ..++++.|+.++..++++..++..... ++..+..|+..+.|
T Consensus 345 aaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~-~dvdl~~lA~~T~G 405 (806)
T 3cf2_A 345 AATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLA-DDVDLEQVANETHG 405 (806)
T ss_dssp EECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEEC-TTCCHHHHHHHCCS
T ss_pred EecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCC-cccCHHHHHHhcCC
Confidence 788999999999998 77 679999999999999998766543222 22346788888765
No 76
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.52 E-value=1.6e-14 Score=143.65 Aligned_cols=181 Identities=17% Similarity=0.240 Sum_probs=113.5
Q ss_pred CCCCcchhccHHHHHHHHHHHhc-----------C-CC-CcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCC-
Q 017884 49 PQSLADVAAHRDIVDTIDRLTSE-----------N-RL-PHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASD- 114 (364)
Q Consensus 49 p~~~~~~vg~~~~~~~l~~~~~~-----------~-~~-~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~- 114 (364)
..+|+++.|.+++++.|...+.. + .. ..+|||||||||||.+|++++.++ ...++.++++.
T Consensus 473 ~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~-----~~~f~~v~~~~l 547 (806)
T 3cf2_A 473 QVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC-----QANFISIKGPEL 547 (806)
T ss_dssp CCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTT-----TCEEEECCHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHh-----CCceEEeccchh
Confidence 45799999999999998877642 1 12 239999999999999999999996 45666655432
Q ss_pred -----CCChHHHHHHHHHHHhcCccccCCccceEEEEEeCCCCCCHH--------------HHHHHHHHHHHhcc--Ccc
Q 017884 115 -----DRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKD--------------AQFALRRVIEKYTK--NTR 173 (364)
Q Consensus 115 -----~~~~~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~--------------~~~~L~~~le~~~~--~~~ 173 (364)
..+...+++.+...... .+.||+|||+|.+... ..+.|+..|+.... ++.
T Consensus 548 ~s~~vGese~~vr~lF~~Ar~~---------~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~~V~ 618 (806)
T 3cf2_A 548 LTMWFGESEANVREIFDKARQA---------APCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVF 618 (806)
T ss_dssp HTTTCSSCHHHHHHHHHHHHTT---------CSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSSSSEE
T ss_pred hccccchHHHHHHHHHHHHHHc---------CCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCCCEE
Confidence 12333455544433222 3689999999998521 25668888886543 344
Q ss_pred EEEEeeccccCchhhhc--cc-eEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHH----cCCCHHHHHHHHH
Q 017884 174 FALICNQVNKIIPALQS--RC-TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRL----CNGDMRKALNILQ 244 (364)
Q Consensus 174 ~Il~~~~~~~l~~~l~s--r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~----~~g~~r~a~~~l~ 244 (364)
+|.+||.++.+++++.+ |+ ..++|+.|+.++..++++..+++..+. ++-.++.|++. ++.|+..+.+...
T Consensus 619 vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~-~~~dl~~la~~t~g~SGadi~~l~~~A~ 695 (806)
T 3cf2_A 619 IIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVA-KDVDLEFLAKMTNGFSGADLTEICQRAC 695 (806)
T ss_dssp EECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--C-CC----------------CHHHHHHHHH
T ss_pred EEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCC-CCCCHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 55678999999999998 87 789999999999999988776544332 12235566655 4567777665543
No 77
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.50 E-value=9.9e-14 Score=110.62 Aligned_cols=132 Identities=17% Similarity=0.206 Sum_probs=91.4
Q ss_pred chhccHHHHHHHHHHHhc--CCCCcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCCCChHHHHHHHHHHHhc
Q 017884 54 DVAAHRDIVDTIDRLTSE--NRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFAST 131 (364)
Q Consensus 54 ~~vg~~~~~~~l~~~~~~--~~~~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 131 (364)
+++|+...+..+...+.. ....+++|+||+|+|||++|+++++.....+. .++ +++............+...
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~--~~v-~~~~~~~~~~~~~~~~~~a--- 75 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFGRNAQG--EFV-YRELTPDNAPQLNDFIALA--- 75 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSSTTTTS--CCE-EEECCTTTSSCHHHHHHHH---
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhCCccCC--CEE-EECCCCCcchhhhcHHHHc---
Confidence 578988888888777753 23345999999999999999999987533332 344 6655432222222222211
Q ss_pred CccccCCccceEEEEEeCCCCCCHHHHHHHHHHHHHhccCccEEEEeeccc-------cCchhhhccc--eEEEecCC
Q 017884 132 QSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVN-------KIIPALQSRC--TRFRFAPL 200 (364)
Q Consensus 132 ~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~-------~l~~~l~sr~--~~i~~~~~ 200 (364)
.+++++|||++.++...+..|+.+|+..+.++++|++||... .+.+.+..|+ ..+.++|+
T Consensus 76 ---------~~g~l~ldei~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~~~~~~~~~~~~~~~L~~rl~~~~i~lPpL 144 (145)
T 3n70_A 76 ---------QGGTLVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDTSLVELAASNHIIAELYYCFAMTQIACLPL 144 (145)
T ss_dssp ---------TTSCEEEECGGGSCHHHHHHHHHHHHSSSCSSCEEEEESSCHHHHHHHSCCCHHHHHHHHHHEEECCCC
T ss_pred ---------CCcEEEEcChHHCCHHHHHHHHHHHhhcCCCEEEEEECCcCHHHHHHcCCCCHHHHHHhcCCEEeCCCC
Confidence 246999999999999999999999988777889999997532 3455666664 45667665
No 78
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.49 E-value=1.5e-12 Score=115.02 Aligned_cols=172 Identities=19% Similarity=0.204 Sum_probs=106.7
Q ss_pred CCCCcchhccHHHHHHHHHHHh------------cCCC-CcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCC
Q 017884 49 PQSLADVAAHRDIVDTIDRLTS------------ENRL-PHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDD 115 (364)
Q Consensus 49 p~~~~~~vg~~~~~~~l~~~~~------------~~~~-~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~ 115 (364)
..+|+++.|.+++++.|...+. +-.. .+++|+||||+|||+++++++..+ ...++.+++...
T Consensus 6 ~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~-----~~~~i~i~g~~l 80 (274)
T 2x8a_A 6 NVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANES-----GLNFISVKGPEL 80 (274)
T ss_dssp ------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHT-----TCEEEEEETTTT
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHc-----CCCEEEEEcHHH
Confidence 4689999999999998877542 1122 239999999999999999999986 335677776553
Q ss_pred CC--hHHHHHHHHHHHhcCccccCCccceEEEEEeCCCCCCHH-----------HHHHHHHHHHHhcc--CccEEEEeec
Q 017884 116 RG--IDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKD-----------AQFALRRVIEKYTK--NTRFALICNQ 180 (364)
Q Consensus 116 ~~--~~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~-----------~~~~L~~~le~~~~--~~~~Il~~~~ 180 (364)
.. .......+....+.... ..+.++++||++.+... ..+.++..|+.... ...++.++|.
T Consensus 81 ~~~~~~~~~~~i~~vf~~a~~-----~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~ 155 (274)
T 2x8a_A 81 LNMYVGESERAVRQVFQRAKN-----SAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNR 155 (274)
T ss_dssp CSSTTHHHHHHHHHHHHHHHH-----TCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEEEEEESC
T ss_pred HhhhhhHHHHHHHHHHHHHHh-----cCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEEEeecCC
Confidence 22 12222223332221100 03579999999987421 23444555553322 2345566788
Q ss_pred cccCchhhhc--cc-eEEEecCCChHHHHHHHHHHHHHc-CCCCC-HHHHHHHHH
Q 017884 181 VNKIIPALQS--RC-TRFRFAPLEPVHVTERLKHVIEAE-GLDVT-EGGLAALVR 230 (364)
Q Consensus 181 ~~~l~~~l~s--r~-~~i~~~~~~~~~~~~~l~~~~~~~-~~~i~-~~~~~~l~~ 230 (364)
++.+++++.+ |+ ..+.++.|+.++..++++..++.. ...++ +-.++.++.
T Consensus 156 p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~~~~la~ 210 (274)
T 2x8a_A 156 PDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAG 210 (274)
T ss_dssp GGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTTTTBTTBBCTTCCHHHHHT
T ss_pred hhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHhcccCCCCccccCHHHHHH
Confidence 9999999987 77 779999999999999998876532 22222 223556665
No 79
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.48 E-value=6.2e-13 Score=123.82 Aligned_cols=124 Identities=20% Similarity=0.260 Sum_probs=86.6
Q ss_pred ceEEEEEeCCCCCCH------------HHHHHHHHHHHHh----------ccCccEEEEe----eccccCchhhhccceE
Q 017884 141 SVKLVLLDEADAMTK------------DAQFALRRVIEKY----------TKNTRFALIC----NQVNKIIPALQSRCTR 194 (364)
Q Consensus 141 ~~~viiiDe~~~l~~------------~~~~~L~~~le~~----------~~~~~~Il~~----~~~~~l~~~l~sr~~~ 194 (364)
...++++||+|.+.. ..|++|+++|+.. ..++.||+++ +.+..+.|.+.+|+.+
T Consensus 250 ~~~il~~DEidki~~~~~~~~~D~s~egvq~aLL~~le~~~~~~~~~~~d~~~ilfI~~gaf~~~~~~dlipel~~R~~i 329 (444)
T 1g41_A 250 QNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQGRLPI 329 (444)
T ss_dssp HHCEEEEETGGGGSCCSSCSSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSCCGGGSCHHHHTTCCE
T ss_pred cCCeeeHHHHHHHhhccCCCCCCchHHHHHHHHHHHhcccccccccceecCCcEEEEeccccccCChhhcchHHhcccce
Confidence 356899999999953 2678999999952 2334455554 2455677999999855
Q ss_pred -EEecCCChHHHHHHHHH-----------HHHHcC--CCCCHHHHHHHHHH--------cCCCHHHHHHHHHHHHHhc--
Q 017884 195 -FRFAPLEPVHVTERLKH-----------VIEAEG--LDVTEGGLAALVRL--------CNGDMRKALNILQSTHMAS-- 250 (364)
Q Consensus 195 -i~~~~~~~~~~~~~l~~-----------~~~~~~--~~i~~~~~~~l~~~--------~~g~~r~a~~~l~~~~~~~-- 250 (364)
+.|++++.+++.+++.. .+..++ +.++++++..|++. -++..|.+.+.++++....
T Consensus 330 ~i~l~~lt~~e~~~Il~~~~~~l~~q~~~~~~~~~~~l~~~~~al~~i~~~a~~~~~~t~~~GaR~L~~~ie~~~~~~~~ 409 (444)
T 1g41_A 330 RVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISF 409 (444)
T ss_dssp EEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHHHHHH
T ss_pred eeeCCCCCHHHHHHHHHHHHHhHHHHHHHHhcccCceEEECHHHHHHHHHHHHHhccCCccCCchHHHHHHHHHHHHHHh
Confidence 99999999999999841 222234 35799999999985 2467888877777655321
Q ss_pred ---------ccCchHHHHHhcCC
Q 017884 251 ---------QQITEEAVYLCTGN 264 (364)
Q Consensus 251 ---------~~i~~~~v~~~~~~ 264 (364)
-.||.+.|...++.
T Consensus 410 ~~~~~~~~~~~i~~~~v~~~l~~ 432 (444)
T 1g41_A 410 SASDMNGQTVNIDAAYVADALGE 432 (444)
T ss_dssp HGGGCTTCEEEECHHHHHHHHTT
T ss_pred hccccCCCeEEEeHHHHHHhcCc
Confidence 13667777665554
No 80
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.47 E-value=1.5e-12 Score=116.22 Aligned_cols=148 Identities=16% Similarity=0.214 Sum_probs=92.9
Q ss_pred EEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCC----CC--hHHHHHHHHHHHhcCccccCCccceEEEEEeCC
Q 017884 77 LLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDD----RG--IDVVRQQIQDFASTQSFSFGVKASVKLVLLDEA 150 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~----~~--~~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~ 150 (364)
++||||||+|||++|+++++.+ +..++.++++.. .+ ...++..+....... ....+.||+|||+
T Consensus 39 lLl~GppGtGKT~la~aiA~~l-----~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~-----~~~~~~vl~iDEi 108 (293)
T 3t15_A 39 LGIWGGKGQGKSFQCELVFRKM-----GINPIMMSAGELESGNAGEPAKLIRQRYREAAEII-----RKGNMCCLFINDL 108 (293)
T ss_dssp EEEEECTTSCHHHHHHHHHHHH-----TCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHH-----TTSSCCCEEEECC
T ss_pred EEEECCCCCCHHHHHHHHHHHh-----CCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHH-----hcCCCeEEEEech
Confidence 8999999999999999999998 345566664321 11 112223232221100 0114679999999
Q ss_pred CCCCH-------------HHHHHHHHHHHH-------------hccCccEEEEeeccccCchhhhc--cceEEEecCCCh
Q 017884 151 DAMTK-------------DAQFALRRVIEK-------------YTKNTRFALICNQVNKIIPALQS--RCTRFRFAPLEP 202 (364)
Q Consensus 151 ~~l~~-------------~~~~~L~~~le~-------------~~~~~~~Il~~~~~~~l~~~l~s--r~~~i~~~~~~~ 202 (364)
|.+.. ..+..|+.+|+. ...++.+|++||.++.+++++++ |+..+.+ .|+.
T Consensus 109 D~~~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~al~R~~R~d~~i~-~P~~ 187 (293)
T 3t15_A 109 DAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYW-APTR 187 (293)
T ss_dssp C--------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC--CHHHHHHHEEEEEE-CCCH
T ss_pred hhhcCCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcccCCHHHhCCCCCceeEe-CcCH
Confidence 98864 234778888862 22467789999999999999986 5644333 4589
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHc-CCCHH
Q 017884 203 VHVTERLKHVIEAEGLDVTEGGLAALVRLC-NGDMR 237 (364)
Q Consensus 203 ~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~-~g~~r 237 (364)
++..++++.++...+ ++.+.+..+.... +.++.
T Consensus 188 ~~r~~Il~~~~~~~~--~~~~~l~~~~~~~~~~~l~ 221 (293)
T 3t15_A 188 EDRIGVCTGIFRTDN--VPAEDVVKIVDNFPGQSID 221 (293)
T ss_dssp HHHHHHHHHHHGGGC--CCHHHHHHHHHHSCSCCHH
T ss_pred HHHHHHHHHhccCCC--CCHHHHHHHhCCCCcccHH
Confidence 999999998877554 4566666555544 45553
No 81
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.43 E-value=7.3e-12 Score=114.48 Aligned_cols=185 Identities=18% Similarity=0.161 Sum_probs=122.5
Q ss_pred CCcchhccHHHHHHHHHHHhcCCCCcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCCC------ChHHHHHH
Q 017884 51 SLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDR------GIDVVRQQ 124 (364)
Q Consensus 51 ~~~~~vg~~~~~~~l~~~~~~~~~~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~------~~~~~~~~ 124 (364)
.-+.++|++..+..|..++..+ +.++|+||+|+|||++++.+++.. . ++.+++.... ....+...
T Consensus 10 ~~~~~~gR~~el~~L~~~l~~~--~~v~i~G~~G~GKT~Ll~~~~~~~-----~--~~~~~~~~~~~~~~~~~~~~~~~~ 80 (350)
T 2qen_A 10 RREDIFDREEESRKLEESLENY--PLTLLLGIRRVGKSSLLRAFLNER-----P--GILIDCRELYAERGHITREELIKE 80 (350)
T ss_dssp SGGGSCSCHHHHHHHHHHHHHC--SEEEEECCTTSSHHHHHHHHHHHS-----S--EEEEEHHHHHHTTTCBCHHHHHHH
T ss_pred ChHhcCChHHHHHHHHHHHhcC--CeEEEECCCcCCHHHHHHHHHHHc-----C--cEEEEeecccccccCCCHHHHHHH
Confidence 3467999999999999999875 568999999999999999999875 1 3444432110 11111111
Q ss_pred HHHHHhc------------------Ccc---c----------cCCccceEEEEEeCCCCCCH-------HHHHHHHHHHH
Q 017884 125 IQDFAST------------------QSF---S----------FGVKASVKLVLLDEADAMTK-------DAQFALRRVIE 166 (364)
Q Consensus 125 i~~~~~~------------------~~~---~----------~~~~~~~~viiiDe~~~l~~-------~~~~~L~~~le 166 (364)
+...... .+. . .....++.+|+|||+|.+.. .....|...++
T Consensus 81 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~~ 160 (350)
T 2qen_A 81 LQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAYAYD 160 (350)
T ss_dssp HHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHHHHH
Confidence 1111000 000 0 00001267999999999864 34455555555
Q ss_pred HhccCccEEEEeeccc---------cCchhhhccc-eEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCH
Q 017884 167 KYTKNTRFALICNQVN---------KIIPALQSRC-TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDM 236 (364)
Q Consensus 167 ~~~~~~~~Il~~~~~~---------~l~~~l~sr~-~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~ 236 (364)
.. .++.+|+++.... ....++..|. ..+.+.|++.++..+++...+...+..++++.+..++..++|++
T Consensus 161 ~~-~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~~~~~~~~i~~~tgG~P 239 (350)
T 2qen_A 161 SL-PNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDVPENEIEEAVELLDGIP 239 (350)
T ss_dssp HC-TTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHTTCH
T ss_pred hc-CCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCH
Confidence 43 4677788775421 1122344444 58999999999999999988877788899999999999999999
Q ss_pred HHHHHHHHH
Q 017884 237 RKALNILQS 245 (364)
Q Consensus 237 r~a~~~l~~ 245 (364)
..+......
T Consensus 240 ~~l~~~~~~ 248 (350)
T 2qen_A 240 GWLVVFGVE 248 (350)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 865554443
No 82
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.43 E-value=8.8e-14 Score=135.67 Aligned_cols=205 Identities=17% Similarity=0.195 Sum_probs=122.4
Q ss_pred CcchhccHHHHHHHHHHHhcCCCC-----------cEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCCCChHH
Q 017884 52 LADVAAHRDIVDTIDRLTSENRLP-----------HLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDV 120 (364)
Q Consensus 52 ~~~~vg~~~~~~~l~~~~~~~~~~-----------~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 120 (364)
...++|++.++..+...+..+... |++|+||||+|||++|+++++.+....+.... ..++....+ ..
T Consensus 294 ~~~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~-~~~~~~l~~-~~ 371 (595)
T 3f9v_A 294 APSIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVAPRAVYTTGK-GSTAAGLTA-AV 371 (595)
T ss_dssp SSTTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTCSCEECCCTT-CSTTTTSEE-EC
T ss_pred cchhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhCCCceecCCC-ccccccccc-ee
Confidence 356899999988887666665311 79999999999999999999876321110000 000000000 00
Q ss_pred HHHHHHHHHhcCccccC--CccceEEEEEeCCCCCCHHHHHHHHHHHHHh-------------ccCccEEEEeeccc---
Q 017884 121 VRQQIQDFASTQSFSFG--VKASVKLVLLDEADAMTKDAQFALRRVIEKY-------------TKNTRFALICNQVN--- 182 (364)
Q Consensus 121 ~~~~i~~~~~~~~~~~~--~~~~~~viiiDe~~~l~~~~~~~L~~~le~~-------------~~~~~~Il~~~~~~--- 182 (364)
..+. .........+ ..+.+++++|||++.+.++.++.|+..|++. +.++.+|.++|...
T Consensus 372 ~~~~---~~g~~~~~~G~l~~A~~gil~IDEid~l~~~~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~vIaatNp~~G~~ 448 (595)
T 3f9v_A 372 VREK---GTGEYYLEAGALVLADGGIAVIDEIDKMRDEDRVAIHEAMEQQTVSIAKAGIVAKLNARAAVIAAGNPKFGRY 448 (595)
T ss_dssp SSGG---GTSSCSEEECHHHHHSSSEECCTTTTCCCSHHHHHHHHHHHSSSEEEESSSSEEEECCCCEEEEEECCTTCCS
T ss_pred eecc---ccccccccCCeeEecCCCcEEeehhhhCCHhHhhhhHHHHhCCEEEEecCCcEEEecCceEEEEEcCCcCCcc
Confidence 0000 0000000000 0013579999999999999999999999963 23566788887664
Q ss_pred ----------cCchhhhccc-eEEEecCCChHHHHHHHHHHHHHc-------------------------CCCCCHHHHH
Q 017884 183 ----------KIIPALQSRC-TRFRFAPLEPVHVTERLKHVIEAE-------------------------GLDVTEGGLA 226 (364)
Q Consensus 183 ----------~l~~~l~sr~-~~i~~~~~~~~~~~~~l~~~~~~~-------------------------~~~i~~~~~~ 226 (364)
.+.+++.+|+ .++.+.+++..+...+...+.... ...+++++.+
T Consensus 449 ~~~~~~~~ni~l~~aLl~RFDl~~~~~~~~~~e~~~i~~~il~~~~~~~~~~~l~~~~l~~~i~~ar~~~~p~ls~ea~~ 528 (595)
T 3f9v_A 449 ISERPVSDNINLPPTILSRFDLIFILKDQPGEQDRELANYILDVHSGKSTKNIIDIDTLRKYIAYARKYVTPKITSEAKN 528 (595)
T ss_dssp CTTSCSCTTTCSCSSSGGGCSCCEEECCTTHHHHHHHHHHHHTTTCCCSSSSTTCCTTTHHHHHHHHHHHCCCCCCCTHH
T ss_pred CcccCchhccCCCHHHHhhCeEEEEeCCCCCHHHHHHHHHHHHHhhccccccCCCHHHHHHHHHHHHHhCCCCCCHHHHH
Confidence 7889999999 455555555544333333333211 2356777777
Q ss_pred HHHHH---------------cCCCHHHHHHHHHHHHHhc-----ccCchHHHHHh
Q 017884 227 ALVRL---------------CNGDMRKALNILQSTHMAS-----QQITEEAVYLC 261 (364)
Q Consensus 227 ~l~~~---------------~~g~~r~a~~~l~~~~~~~-----~~i~~~~v~~~ 261 (364)
.|.++ .++++|.+.+++......+ ..++.+++..+
T Consensus 529 ~l~~~y~~lR~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~A 583 (595)
T 3f9v_A 529 LITDFFVEMRKKSSETPDSPILITPRQLEALIRISEAYAKMALKAEVTREDAERA 583 (595)
T ss_dssp HHHHHHTTSSCSCCBCSSSCBCSSTTTTTHHHHHHHHHHHTTSSCCSSHHHHHHH
T ss_pred HHHHHHHHHHHhhccCCCccccccHHHHHHHHHHHHHHHHHhCcCCCCHHHHHHH
Confidence 77776 4677777777665443322 36777776554
No 83
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.42 E-value=3.8e-13 Score=106.90 Aligned_cols=128 Identities=12% Similarity=0.132 Sum_probs=86.5
Q ss_pred chhccHHHHHHHHHHHhc--CCCCcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCCCChHHHHHHHHHHHhc
Q 017884 54 DVAAHRDIVDTIDRLTSE--NRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFAST 131 (364)
Q Consensus 54 ~~vg~~~~~~~l~~~~~~--~~~~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 131 (364)
+++|++..+..+.+.+.. ....+++|+||||+|||++|+++++... .++.+++.... +.. .......
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~~------~~~~~~~~~~~--~~~---~~~~~~~ 73 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNGT------PWVSPARVEYL--IDM---PMELLQK 73 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTTS------CEECCSSTTHH--HHC---HHHHHHH
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCC------CeEEechhhCC--hHh---hhhHHHh
Confidence 478988888888777653 3335699999999999999999988642 56666665421 111 1111111
Q ss_pred CccccCCccceEEEEEeCCCCCCHHHHHHHHHHHHHhc-cCccEEEEeeccc-c----Cchhhhccc--eEEEecCC
Q 017884 132 QSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYT-KNTRFALICNQVN-K----IIPALQSRC--TRFRFAPL 200 (364)
Q Consensus 132 ~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~-~~~~~Il~~~~~~-~----l~~~l~sr~--~~i~~~~~ 200 (364)
. .+++++|||++.++.+.+..|++++++.. .++++|++||... . +.+.+..|. ..+.+||+
T Consensus 74 -----a---~~~~l~lDei~~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn~~~~~~~~~~~~~L~~rl~~~~i~lPpL 142 (143)
T 3co5_A 74 -----A---EGGVLYVGDIAQYSRNIQTGITFIIGKAERCRVRVIASCSYAAGSDGISCEEKLAGLFSESVVRIPPL 142 (143)
T ss_dssp -----T---TTSEEEEEECTTCCHHHHHHHHHHHHHHTTTTCEEEEEEEECTTTC--CHHHHHHHHSSSEEEEECCC
T ss_pred -----C---CCCeEEEeChHHCCHHHHHHHHHHHHhCCCCCEEEEEecCCCHHHHHhCccHHHHHHhcCcEEeCCCC
Confidence 1 25699999999999999999999999863 5678888887542 2 334555664 45666665
No 84
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.35 E-value=5e-12 Score=127.58 Aligned_cols=180 Identities=21% Similarity=0.276 Sum_probs=124.4
Q ss_pred ccCCCCCcchhccHHHHHHHHHHHhc-------------CCCCcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeC
Q 017884 46 KYRPQSLADVAAHRDIVDTIDRLTSE-------------NRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNA 112 (364)
Q Consensus 46 ~~~p~~~~~~vg~~~~~~~l~~~~~~-------------~~~~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~ 112 (364)
.+.+.+|++++|++..++.|..++.. ....+++|+||||||||+++++++..+ ...++.+++
T Consensus 197 ~~~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l-----~~~~i~v~~ 271 (806)
T 1ypw_A 197 SLNEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET-----GAFFFLING 271 (806)
T ss_dssp CSSSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTT-----TCEEEEEEH
T ss_pred ccCCCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHc-----CCcEEEEEc
Confidence 45678999999999999999888763 122349999999999999999999986 445667765
Q ss_pred CCCC--ChH----HHHHHHHHHHhcCccccCCccceEEEEEeCCCCCCH-----------HHHHHHHHHHHHhc--cCcc
Q 017884 113 SDDR--GID----VVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTK-----------DAQFALRRVIEKYT--KNTR 173 (364)
Q Consensus 113 ~~~~--~~~----~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~~-----------~~~~~L~~~le~~~--~~~~ 173 (364)
.... ... .+...+...... .+.++++||++.+.. ..++.|+..++... ..+.
T Consensus 272 ~~l~~~~~g~~~~~l~~vf~~a~~~---------~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~v~ 342 (806)
T 1ypw_A 272 PEIMSKLAGESESNLRKAFEEAEKN---------APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVI 342 (806)
T ss_dssp HHHSSSSTTHHHHHHHHHHHHHHHH---------CSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSCCE
T ss_pred hHhhhhhhhhHHHHHHHHHHHHHhc---------CCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcccccEE
Confidence 3211 111 222222222211 357999999988752 24567777777543 3456
Q ss_pred EEEEeeccccCchhhhc--cc-eEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHH
Q 017884 174 FALICNQVNKIIPALQS--RC-TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKAL 240 (364)
Q Consensus 174 ~Il~~~~~~~l~~~l~s--r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~a~ 240 (364)
+|+++|.+..+.+.+++ |+ ..+.+..|+.++..+++...+....+. ++..+..++..+.|..+..+
T Consensus 343 vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l~-~~~~l~~la~~t~g~~g~dl 411 (806)
T 1ypw_A 343 VMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLA-DDVDLEQVANETHGHVGADL 411 (806)
T ss_dssp EEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSCCC-TTCCTHHHHHSCSSCCHHHH
T ss_pred EecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHHhcCCCc-ccchhHHHHHhhcCcchHHH
Confidence 77788888889998887 77 668999999999999998776544332 22335667777766554433
No 85
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=99.35 E-value=2.8e-11 Score=111.33 Aligned_cols=193 Identities=18% Similarity=0.227 Sum_probs=129.7
Q ss_pred cchhccHHHHHHHHHHHhc--CCCCcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCCCChHHHHHHHHHHHh
Q 017884 53 ADVAAHRDIVDTIDRLTSE--NRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFAS 130 (364)
Q Consensus 53 ~~~vg~~~~~~~l~~~~~~--~~~~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 130 (364)
.+++|....+..+...+.. ....+++++|++|+||+.+|+.++..-...+ .++.+|+..... +.+...+.....
T Consensus 129 ~~~ig~s~~~~~~~~~~~~~a~~~~~vli~GesGtGKe~lAr~ih~~s~r~~---~fv~vnc~~~~~-~~~~~~lfg~~~ 204 (368)
T 3dzd_A 129 IEFVGEHPKILEIKRLIPKIAKSKAPVLITGESGTGKEIVARLIHRYSGRKG---AFVDLNCASIPQ-ELAESELFGHEK 204 (368)
T ss_dssp CCCCCCSHHHHHHHHHHHHHHTSCSCEEEECCTTSSHHHHHHHHHHHHCCCS---CEEEEESSSSCT-TTHHHHHHEECS
T ss_pred ccccccchHHHHHHhhhhhhhccchhheEEeCCCchHHHHHHHHHHhccccC---CcEEEEcccCCh-HHHHHHhcCccc
Confidence 3577877766665555432 1223489999999999999999998763322 288888876432 222222221110
Q ss_pred cCccccC--------CccceEEEEEeCCCCCCHHHHHHHHHHHHHhc-----------cCccEEEEeecc-------ccC
Q 017884 131 TQSFSFG--------VKASVKLVLLDEADAMTKDAQFALRRVIEKYT-----------KNTRFALICNQV-------NKI 184 (364)
Q Consensus 131 ~~~~~~~--------~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~-----------~~~~~Il~~~~~-------~~l 184 (364)
..+.-+ ..++++++++||++.|+...|..|++++++.. .++++|.+|+.. ..+
T Consensus 205 -g~~tga~~~~~g~~~~a~~gtlfldei~~l~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~l~~~v~~g~f 283 (368)
T 3dzd_A 205 -GAFTGALTRKKGKLELADQGTLFLDEVGELDQRVQAKLLRVLETGSFTRLGGNQKIEVDIRVISATNKNLEEEIKKGNF 283 (368)
T ss_dssp -CSSSSCCCCEECHHHHTTTSEEEEETGGGSCHHHHHHHHHHHHHSEECCBTCCCBEECCCEEEEEESSCHHHHHHTTSS
T ss_pred -cccCCcccccCChHhhcCCCeEEecChhhCCHHHHHHHHHHHHhCCcccCCCCcceeeeeEEEEecCCCHHHHHHcCCc
Confidence 001000 01245689999999999999999999999742 356788888643 245
Q ss_pred chhhhccc--eEEEecCCCh--HHHHHHHHHHH----HHcC---CCCCHHHHHHHHHHc-CCCHHHHHHHHHHHHHhc
Q 017884 185 IPALQSRC--TRFRFAPLEP--VHVTERLKHVI----EAEG---LDVTEGGLAALVRLC-NGDMRKALNILQSTHMAS 250 (364)
Q Consensus 185 ~~~l~sr~--~~i~~~~~~~--~~~~~~l~~~~----~~~~---~~i~~~~~~~l~~~~-~g~~r~a~~~l~~~~~~~ 250 (364)
.+.+..|+ ..+.+||+.+ +++..++...+ .+.+ ..+++++++.|..+. +||+|.+.+.++.+...+
T Consensus 284 r~dL~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpGNvreL~n~i~~~~~~~ 361 (368)
T 3dzd_A 284 REDLYYRLSVFQIYLPPLRERGKDVILLAEYFLKKFAKEYKKNCFELSEETKEYLMKQEWKGNVRELKNLIERAVILC 361 (368)
T ss_dssp CHHHHHHHTSEEEECCCGGGSTTHHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHTCCCTTHHHHHHHHHHHHHHTC
T ss_pred cHHHHHHhCCeEEeCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCCCcHHHHHHHHHHHHHHhC
Confidence 55677776 4577888877 56655544443 3333 458999999999886 999999999999887643
No 86
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.33 E-value=1.3e-11 Score=102.08 Aligned_cols=131 Identities=13% Similarity=0.161 Sum_probs=82.9
Q ss_pred hccCCCCCcchhc----cHHHHHHHHHHHhcCC---CCcEEEeCCCCccHHHHHHHHHHHHc-CCCCCCcEEEEeCCCCC
Q 017884 45 EKYRPQSLADVAA----HRDIVDTIDRLTSENR---LPHLLLYGPPGTGKTSTILAVARKLY-GAQYHNMILELNASDDR 116 (364)
Q Consensus 45 ~~~~p~~~~~~vg----~~~~~~~l~~~~~~~~---~~~lll~G~~G~GKt~la~~l~~~l~-~~~~~~~~~~~~~~~~~ 116 (364)
++|++.+|+++++ +..++..++.++.+.. ...++|+||+|+|||+++++++..+. ..+....+ ++.
T Consensus 2 ~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~--~~~---- 75 (180)
T 3ec2_A 2 KRYWNANLDTYHPKNVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYF--FDT---- 75 (180)
T ss_dssp CSCTTCCSSSCCCCSHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCE--EEH----
T ss_pred chhhhCccccccCCCHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEE--EEH----
Confidence 5899999999986 4566667777776543 23489999999999999999999884 22322222 221
Q ss_pred ChHHHHHHHHHHHhcCcc--ccCCccceEEEEEeCCC--CCCHHHHHHHHHHHHHhc-cCccEEEEeecccc
Q 017884 117 GIDVVRQQIQDFASTQSF--SFGVKASVKLVLLDEAD--AMTKDAQFALRRVIEKYT-KNTRFALICNQVNK 183 (364)
Q Consensus 117 ~~~~~~~~i~~~~~~~~~--~~~~~~~~~viiiDe~~--~l~~~~~~~L~~~le~~~-~~~~~Il~~~~~~~ 183 (364)
..+...+......... .......+.+++|||++ .+.+..+..|..+++... ....+|++||....
T Consensus 76 --~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~~~ 145 (180)
T 3ec2_A 76 --KDLIFRLKHLMDEGKDTKFLKTVLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYSLQ 145 (180)
T ss_dssp --HHHHHHHHHHHHHTCCSHHHHHHHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCCSC
T ss_pred --HHHHHHHHHHhcCchHHHHHHHhcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCChh
Confidence 1111111111110000 00001136799999998 466777888888887764 45678888876544
No 87
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=99.32 E-value=5.2e-11 Score=110.37 Aligned_cols=204 Identities=19% Similarity=0.199 Sum_probs=134.8
Q ss_pred CcchhccHHHHHHHHHHHhcCC--CCcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCCCChHHHHHHHHHHH
Q 017884 52 LADVAAHRDIVDTIDRLTSENR--LPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFA 129 (364)
Q Consensus 52 ~~~~vg~~~~~~~l~~~~~~~~--~~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 129 (364)
+..++|....+..+...+..-. ..+++++|++|+||+++|++++.... .....++.+|+... ..+.+...+....
T Consensus 136 ~~~~ig~s~~m~~l~~~i~~~a~~~~~vli~Ge~GtGK~~lAr~ih~~s~--r~~~~fv~v~~~~~-~~~~~~~elfg~~ 212 (387)
T 1ny5_A 136 EEEYVFESPKMKEILEKIKKISCAECPVLITGESGVGKEVVARLIHKLSD--RSKEPFVALNVASI-PRDIFEAELFGYE 212 (387)
T ss_dssp CCCCCCCSHHHHHHHHHHHHHTTCCSCEEEECSTTSSHHHHHHHHHHHST--TTTSCEEEEETTTS-CHHHHHHHHHCBC
T ss_pred chhhhhccHHhhHHHHHHHHhcCCCCCeEEecCCCcCHHHHHHHHHHhcC--CCCCCeEEEecCCC-CHHHHHHHhcCCC
Confidence 4567787777776666655322 22389999999999999999988743 23456788888763 2233333222211
Q ss_pred hcCccc--------cCCccceEEEEEeCCCCCCHHHHHHHHHHHHHh-----------ccCccEEEEeecc-------cc
Q 017884 130 STQSFS--------FGVKASVKLVLLDEADAMTKDAQFALRRVIEKY-----------TKNTRFALICNQV-------NK 183 (364)
Q Consensus 130 ~~~~~~--------~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~-----------~~~~~~Il~~~~~-------~~ 183 (364)
.. .+. .-..++++++++||++.|+...|..|++++++. +.++++|.+||.. ..
T Consensus 213 ~g-~~tga~~~~~g~~~~a~~gtlfldei~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~l~~~~~~g~ 291 (387)
T 1ny5_A 213 KG-AFTGAVSSKEGFFELADGGTLFLDEIGELSLEAQAKLLRVIESGKFYRLGGRKEIEVNVRILAATNRNIKELVKEGK 291 (387)
T ss_dssp TT-SSTTCCSCBCCHHHHTTTSEEEEESGGGCCHHHHHHHHHHHHHSEECCBTCCSBEECCCEEEEEESSCHHHHHHTTS
T ss_pred CC-CCCCcccccCCceeeCCCcEEEEcChhhCCHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCCCCHHHHHHcCC
Confidence 00 000 000124679999999999999999999999973 2467788888742 24
Q ss_pred Cchhhhccc--eEEEecCCCh--HHHHHHHHH----HHHHcCC---CCCHHHHHHHHHHc-CCCHHHHHHHHHHHHHhc-
Q 017884 184 IIPALQSRC--TRFRFAPLEP--VHVTERLKH----VIEAEGL---DVTEGGLAALVRLC-NGDMRKALNILQSTHMAS- 250 (364)
Q Consensus 184 l~~~l~sr~--~~i~~~~~~~--~~~~~~l~~----~~~~~~~---~i~~~~~~~l~~~~-~g~~r~a~~~l~~~~~~~- 250 (364)
+.+.+-.|. ..+.+||+.+ +++..++.. .+.+.+. .+++++++.|..+. .||+|.+.+.++.++..+
T Consensus 292 fr~dl~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~l~~~~wpGNvreL~~~i~~~~~~~~ 371 (387)
T 1ny5_A 292 FREDLYYRLGVIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQELLLSYPWYGNVRELKNVIERAVLFSE 371 (387)
T ss_dssp SCHHHHHHHTTEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCCCCEECHHHHHHHHHSCCTTHHHHHHHHHHHHHHHCC
T ss_pred ccHHHHHhhcCCeecCCcchhccccHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCCcHHHHHHHHHHHHHHhCC
Confidence 455565664 4577777765 455444433 3344443 47999999999776 999999999999887654
Q ss_pred -ccCchHHHH
Q 017884 251 -QQITEEAVY 259 (364)
Q Consensus 251 -~~i~~~~v~ 259 (364)
..|+.+++.
T Consensus 372 ~~~i~~~~l~ 381 (387)
T 1ny5_A 372 GKFIDRGELS 381 (387)
T ss_dssp SSEECHHHHH
T ss_pred CCcCcHHHCc
Confidence 356666653
No 88
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.30 E-value=8.9e-11 Score=107.45 Aligned_cols=184 Identities=16% Similarity=0.152 Sum_probs=117.4
Q ss_pred CCcchhccHHHHHHHHHHHhcCCCCcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCC-----CChHHHHHHH
Q 017884 51 SLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDD-----RGIDVVRQQI 125 (364)
Q Consensus 51 ~~~~~vg~~~~~~~l~~~~~~~~~~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~-----~~~~~~~~~i 125 (364)
..+.++|++..+..|.. +.. +.++|+||+|+|||++++.+++.+.. .++.+++... .........+
T Consensus 11 ~~~~~~gR~~el~~L~~-l~~---~~v~i~G~~G~GKT~L~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~l 81 (357)
T 2fna_A 11 NRKDFFDREKEIEKLKG-LRA---PITLVLGLRRTGKSSIIKIGINELNL-----PYIYLDLRKFEERNYISYKDFLLEL 81 (357)
T ss_dssp SGGGSCCCHHHHHHHHH-TCS---SEEEEEESTTSSHHHHHHHHHHHHTC-----CEEEEEGGGGTTCSCCCHHHHHHHH
T ss_pred CHHHhcChHHHHHHHHH-hcC---CcEEEECCCCCCHHHHHHHHHHhcCC-----CEEEEEchhhccccCCCHHHHHHHH
Confidence 34678999999999998 765 57899999999999999999998732 2344544321 1112221111
Q ss_pred HHHHh--------------cC------------------ccc-------cCCcc-ceEEEEEeCCCCCCH----HHHHHH
Q 017884 126 QDFAS--------------TQ------------------SFS-------FGVKA-SVKLVLLDEADAMTK----DAQFAL 161 (364)
Q Consensus 126 ~~~~~--------------~~------------------~~~-------~~~~~-~~~viiiDe~~~l~~----~~~~~L 161 (364)
..... .. ... +.... ++.+|+|||+|.+.. .....|
T Consensus 82 ~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~~~~~~~~l 161 (357)
T 2fna_A 82 QKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLRGVNLLPAL 161 (357)
T ss_dssp HHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCTTCCCHHHH
T ss_pred HHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccCchhHHHHH
Confidence 11100 00 000 00000 267999999999853 234445
Q ss_pred HHHHHHhccCccEEEEeeccc---------cCchhhhccc-eEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 017884 162 RRVIEKYTKNTRFALICNQVN---------KIIPALQSRC-TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRL 231 (364)
Q Consensus 162 ~~~le~~~~~~~~Il~~~~~~---------~l~~~l~sr~-~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~ 231 (364)
....+.. .++.+|+++.... ....++..|. ..+.+.|++.++..+++...+...+...++. ..++..
T Consensus 162 ~~~~~~~-~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~--~~i~~~ 238 (357)
T 2fna_A 162 AYAYDNL-KRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFKDY--EVVYEK 238 (357)
T ss_dssp HHHHHHC-TTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCCCH--HHHHHH
T ss_pred HHHHHcC-CCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCCcH--HHHHHH
Confidence 4455543 3667788775432 1112344454 7899999999999999998776666665544 889999
Q ss_pred cCCCHHHHHHHHHHH
Q 017884 232 CNGDMRKALNILQST 246 (364)
Q Consensus 232 ~~g~~r~a~~~l~~~ 246 (364)
++|++..+......+
T Consensus 239 t~G~P~~l~~~~~~~ 253 (357)
T 2fna_A 239 IGGIPGWLTYFGFIY 253 (357)
T ss_dssp HCSCHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHH
Confidence 999999776655443
No 89
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.28 E-value=6.5e-14 Score=141.32 Aligned_cols=156 Identities=19% Similarity=0.235 Sum_probs=108.1
Q ss_pred ccCCCCCcchhccHHHHHHHHHHHhcC-------------CCCcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeC
Q 017884 46 KYRPQSLADVAAHRDIVDTIDRLTSEN-------------RLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNA 112 (364)
Q Consensus 46 ~~~p~~~~~~vg~~~~~~~l~~~~~~~-------------~~~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~ 112 (364)
.....+|++++|.+.+++.+...+... ...+++|+||||+|||++|++++..+.. .++.+++
T Consensus 470 ~~~~v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~-----~~i~v~~ 544 (806)
T 1ypw_A 470 EVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQA-----NFISIKG 544 (806)
T ss_dssp CCCCCSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTC-----CCCCCCC
T ss_pred cCccccccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCC-----CEEEEec
Confidence 344568999999999999998877521 2234899999999999999999999832 3344444
Q ss_pred CCC------CChHHHHHHHHHHHhcCccccCCccceEEEEEeCCCCCCH--------------HHHHHHHHHHHHh--cc
Q 017884 113 SDD------RGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTK--------------DAQFALRRVIEKY--TK 170 (364)
Q Consensus 113 ~~~------~~~~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~~--------------~~~~~L~~~le~~--~~ 170 (364)
... .....++..+...... .+.+++|||+|.+.. ...+.|+..|+.. ..
T Consensus 545 ~~l~~~~~g~~~~~i~~~f~~a~~~---------~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~~~~ 615 (806)
T 1ypw_A 545 PELLTMWFGESEANVREIFDKARQA---------APCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKK 615 (806)
T ss_dssp SSSTTCCTTTSSHHHHHHHHHHHHH---------CSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC------
T ss_pred hHhhhhhcCccHHHHHHHHHHHHhc---------CCeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhcccccC
Confidence 332 1122333333332221 256999999998731 2235555555533 23
Q ss_pred CccEEEEeeccccCchhhhc--cc-eEEEecCCChHHHHHHHHHHHHH
Q 017884 171 NTRFALICNQVNKIIPALQS--RC-TRFRFAPLEPVHVTERLKHVIEA 215 (364)
Q Consensus 171 ~~~~Il~~~~~~~l~~~l~s--r~-~~i~~~~~~~~~~~~~l~~~~~~ 215 (364)
++.+|++||.++.+++++.+ |+ ..+.|+.|+.++...+++.++++
T Consensus 616 ~v~vI~tTN~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~ 663 (806)
T 1ypw_A 616 NVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRK 663 (806)
T ss_dssp CCBCCCCCBSCGGGSCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTTSC
T ss_pred CeEEEEecCCcccCCHHHhCccccCceeecCCCCHHHHHHHHHHHhcc
Confidence 56678888999999999998 88 68999999999999999887654
No 90
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=99.18 E-value=2.2e-10 Score=99.20 Aligned_cols=138 Identities=17% Similarity=0.227 Sum_probs=91.0
Q ss_pred HHHHHHHHHHhcC-C-CCcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCCCChHHHHHHHHHHHhcCccccC
Q 017884 60 DIVDTIDRLTSEN-R-LPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFG 137 (364)
Q Consensus 60 ~~~~~l~~~~~~~-~-~~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 137 (364)
.....+..+++.. . ..+++||||||+|||.++.++++.+. . ...++.... . +.+.
T Consensus 88 ~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~~~-----l-~G~vn~~~~---------------~--f~l~ 144 (267)
T 1u0j_A 88 YAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTVP-----F-YGCVNWTNE---------------N--FPFN 144 (267)
T ss_dssp HHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHSS-----C-EEECCTTCS---------------S--CTTG
T ss_pred HHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhhhc-----c-cceeecccc---------------c--cccc
Confidence 3444577777765 2 23499999999999999999999742 1 112222210 1 1122
Q ss_pred CccceEEEEEeCCCCCCHHHHHHHHHHHH--------Hhc-----cCccEEEEeec----------c-ccCchhhhccce
Q 017884 138 VKASVKLVLLDEADAMTKDAQFALRRVIE--------KYT-----KNTRFALICNQ----------V-NKIIPALQSRCT 193 (364)
Q Consensus 138 ~~~~~~viiiDe~~~l~~~~~~~L~~~le--------~~~-----~~~~~Il~~~~----------~-~~l~~~l~sr~~ 193 (364)
....+++++.||+. +..+.++.+..+++ .+. ..+.+|++||. . ....+.|++|+.
T Consensus 145 ~~~~k~i~l~Ee~~-~~~d~~~~lr~i~~G~~~~id~K~k~~~~v~~tPvIitsN~~i~~~~~g~~~s~~~~~~L~sR~~ 223 (267)
T 1u0j_A 145 DCVDKMVIWWEEGK-MTAKVVESAKAILGGSKVRVDQKCKSSAQIDPTPVIVTSNTNMCAVIDGNSTTFEHQQPLQDRMF 223 (267)
T ss_dssp GGSSCSEEEECSCC-EETTTHHHHHHHHTTCCEEC------CCEECCCCEEEEESSCTTCEEETTEEECTTHHHHHTTEE
T ss_pred cccccEEEEecccc-chhHHHHHHHHHhCCCcEEEecCcCCcccccCCCEEEEecCCcccccccCccchhhhHHHhhhEE
Confidence 21235666666654 44566677888887 333 56788999875 1 256688999999
Q ss_pred EEEec--------CCChHHHHHHHHHHHHHcCCCCCH
Q 017884 194 RFRFA--------PLEPVHVTERLKHVIEAEGLDVTE 222 (364)
Q Consensus 194 ~i~~~--------~~~~~~~~~~l~~~~~~~~~~i~~ 222 (364)
+++|. +++++++..++. +++.+..++++
T Consensus 224 ~f~F~~~~p~~~~~lt~~~~~~f~~-w~~~~~~~~~~ 259 (267)
T 1u0j_A 224 KFELTRRLDHDFGKVTKQEVKDFFR-WAKDHVVEVEH 259 (267)
T ss_dssp EEECCSCCCTTSCCCCHHHHHHHHH-HHHHTCCCCCC
T ss_pred EEECCCcCCcccCCCCHHHHHHHHH-HHHHcCCCCcc
Confidence 99998 899999999998 55666666543
No 91
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=99.12 E-value=1.8e-10 Score=109.38 Aligned_cols=140 Identities=14% Similarity=0.195 Sum_probs=80.7
Q ss_pred CCCCCCCChhhccCCCCCcchh-ccHHHHHHHHHHHhcCCCCcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCC
Q 017884 35 PPDIKASPWVEKYRPQSLADVA-AHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNAS 113 (364)
Q Consensus 35 ~~~~~~~~~~~~~~p~~~~~~v-g~~~~~~~l~~~~~~~~~~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~ 113 (364)
+-..++.||..+|||.+|+++- +|..++..+...+..+. ++++|.|++|+|||+++.+++..+.+.+. ..++-+..+
T Consensus 6 ~~~~~~~~~~~~~~p~~~~~Ln~~Q~~av~~~~~~i~~~~-~~~li~G~aGTGKT~ll~~~~~~l~~~~~-~~il~~a~T 83 (459)
T 3upu_A 6 HHHHHSSGLVPRGSHMTFDDLTEGQKNAFNIVMKAIKEKK-HHVTINGPAGTGATTLTKFIIEALISTGE-TGIILAAPT 83 (459)
T ss_dssp ---------------CCSSCCCHHHHHHHHHHHHHHHSSS-CEEEEECCTTSCHHHHHHHHHHHHHHTTC-CCEEEEESS
T ss_pred CCCCccCCCccccCCCccccCCHHHHHHHHHHHHHHhcCC-CEEEEEeCCCCCHHHHHHHHHHHHHhcCC-ceEEEecCc
Confidence 3445689999999999999997 68888888888887765 37999999999999999999999866544 122222222
Q ss_pred CCCChHHHHHHH-------HHHHhcCccc------c-----CCccceEEEEEeCCCCCCHHHHHHHHHHHHHhccCccEE
Q 017884 114 DDRGIDVVRQQI-------QDFASTQSFS------F-----GVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFA 175 (364)
Q Consensus 114 ~~~~~~~~~~~i-------~~~~~~~~~~------~-----~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~I 175 (364)
. .....+.+.+ ..+....+.. + ......++++|||++.++...+..|...+. ..+.++
T Consensus 84 ~-~Aa~~l~~~~~~~~~T~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiDE~~~~~~~~~~~l~~~~~---~~~~~~ 159 (459)
T 3upu_A 84 H-AAKKILSKLSGKEASTIHSILKINPVTYEENVLFEQKEVPDLAKCRVLICDEVSMYDRKLFKILLSTIP---PWCTII 159 (459)
T ss_dssp H-HHHHHHHHHHSSCEEEHHHHHTEEEEECSSCEEEEECSCCCCSSCSEEEESCGGGCCHHHHHHHHHHSC---TTCEEE
T ss_pred H-HHHHHHHhhhccchhhHHHHhccCcccccccchhcccccccccCCCEEEEECchhCCHHHHHHHHHhcc---CCCEEE
Confidence 1 1112222211 1112110000 0 011246799999999999887777777653 567788
Q ss_pred EEeec
Q 017884 176 LICNQ 180 (364)
Q Consensus 176 l~~~~ 180 (364)
++++.
T Consensus 160 ~vGD~ 164 (459)
T 3upu_A 160 GIGDN 164 (459)
T ss_dssp EEECT
T ss_pred EECCH
Confidence 88853
No 92
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.07 E-value=4.8e-10 Score=89.41 Aligned_cols=98 Identities=14% Similarity=0.242 Sum_probs=69.0
Q ss_pred CcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCCCChHHHHHHHHHHHhcCccccCCccceEEEEEeCCCCCC
Q 017884 75 PHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMT 154 (364)
Q Consensus 75 ~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~ 154 (364)
..++|+||+|+|||+++++++..+... ...++.++....... . +.. ...+++|||++.+.
T Consensus 37 ~~~~l~G~~G~GKTtL~~~i~~~~~~~--g~~~~~~~~~~~~~~--------~--------~~~--~~~lLilDE~~~~~ 96 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQAWVAQALEA--GKNAAYIDAASMPLT--------D--------AAF--EAEYLAVDQVEKLG 96 (149)
T ss_dssp SEEEEESSSTTTTCHHHHHHHHHHHTT--TCCEEEEETTTSCCC--------G--------GGG--GCSEEEEESTTCCC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhc--CCcEEEEcHHHhhHH--------H--------HHh--CCCEEEEeCccccC
Confidence 458999999999999999999988643 334566666543222 0 111 46799999999998
Q ss_pred HHHHHHHHHHHHHhccC-cc-EEEEeecccc-C--chhhhccc
Q 017884 155 KDAQFALRRVIEKYTKN-TR-FALICNQVNK-I--IPALQSRC 192 (364)
Q Consensus 155 ~~~~~~L~~~le~~~~~-~~-~Il~~~~~~~-l--~~~l~sr~ 192 (364)
...++.|+.+++..... .. +|++++.... + .+.+.||+
T Consensus 97 ~~~~~~l~~li~~~~~~g~~~iiits~~~p~~l~~~~~L~SRl 139 (149)
T 2kjq_A 97 NEEQALLFSIFNRFRNSGKGFLLLGSEYTPQQLVIREDLRTRM 139 (149)
T ss_dssp SHHHHHHHHHHHHHHHHTCCEEEEEESSCTTTSSCCHHHHHHG
T ss_pred hHHHHHHHHHHHHHHHcCCcEEEEECCCCHHHccccHHHHHHH
Confidence 77788899998865432 33 7777764322 1 28888886
No 93
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=99.07 E-value=2.9e-10 Score=95.60 Aligned_cols=131 Identities=18% Similarity=0.186 Sum_probs=75.8
Q ss_pred hhhccCCCCCcchhccH----HHHHHHHHHHhcCCC----CcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCC
Q 017884 43 WVEKYRPQSLADVAAHR----DIVDTIDRLTSENRL----PHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASD 114 (364)
Q Consensus 43 ~~~~~~p~~~~~~vg~~----~~~~~l~~~~~~~~~----~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~ 114 (364)
+..+|++.+|+++++.. .++..+..++..... .+++|+||+|+|||++++++++.+...+.. ++.+++..
T Consensus 15 ~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~--~~~~~~~~ 92 (202)
T 2w58_A 15 MPREILRASLSDVDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVS--SLIVYVPE 92 (202)
T ss_dssp SCGGGGCCCTTSSCCSSHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCC--EEEEEHHH
T ss_pred CCHHHHcCCHhhccCCChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCe--EEEEEhHH
Confidence 44577888999999743 355566777765421 569999999999999999999998654433 33343321
Q ss_pred CCChHHHHHHHHHHHhcCccc--cCCccceEEEEEeCCCCCCH--HHHHHHH-HHHHHh-ccCccEEEEeecc
Q 017884 115 DRGIDVVRQQIQDFASTQSFS--FGVKASVKLVLLDEADAMTK--DAQFALR-RVIEKY-TKNTRFALICNQV 181 (364)
Q Consensus 115 ~~~~~~~~~~i~~~~~~~~~~--~~~~~~~~viiiDe~~~l~~--~~~~~L~-~~le~~-~~~~~~Il~~~~~ 181 (364)
+...+.......... +.......+|+|||++.... ..+..++ .+++.. .....+|++||..
T Consensus 93 ------~~~~~~~~~~~~~~~~~~~~~~~~~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~~ 159 (202)
T 2w58_A 93 ------LFRELKHSLQDQTMNEKLDYIKKVPVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNFD 159 (202)
T ss_dssp ------HHHHHHHC---CCCHHHHHHHHHSSEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESSC
T ss_pred ------HHHHHHHHhccchHHHHHHHhcCCCEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCCC
Confidence 111111100000000 00000245999999977543 2244344 466553 4566788888743
No 94
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=99.00 E-value=1e-09 Score=90.63 Aligned_cols=120 Identities=19% Similarity=0.290 Sum_probs=73.6
Q ss_pred HHHHHHHHHHhcCCCC-cEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCCCChHHHHHHHHHHHhcCccccCC
Q 017884 60 DIVDTIDRLTSENRLP-HLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGV 138 (364)
Q Consensus 60 ~~~~~l~~~~~~~~~~-~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 138 (364)
..+..|+.++++-... +++||||||+|||+++.++++.+.+. ++.+ ...... . ... + +.
T Consensus 43 ~f~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~~l~g~-----i~~f--ans~s~-f-------~l~--~--l~- 102 (212)
T 1tue_A 43 TFLGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFIQGA-----VISF--VNSTSH-F-------WLE--P--LT- 102 (212)
T ss_dssp HHHHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHHTCE-----ECCC--CCSSSC-G-------GGG--G--GT-
T ss_pred HHHHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHhCCC-----eeeE--Eeccch-h-------hhc--c--cC-
Confidence 4566777777753212 59999999999999999999998421 1111 110000 0 000 0 11
Q ss_pred ccceEEEEEeCCCCCCHHH-HHHHHHHHHHhc-------------cCccEEEEeec---cccCchhhhccceEEEecCCC
Q 017884 139 KASVKLVLLDEADAMTKDA-QFALRRVIEKYT-------------KNTRFALICNQ---VNKIIPALQSRCTRFRFAPLE 201 (364)
Q Consensus 139 ~~~~~viiiDe~~~l~~~~-~~~L~~~le~~~-------------~~~~~Il~~~~---~~~l~~~l~sr~~~i~~~~~~ 201 (364)
+.++++|||++.-.-.. ...+..+++..+ ....+|++||. .....+.|.||+..+.|+.+-
T Consensus 103 --~~kIiiLDEad~~~~~~~d~~lrn~ldG~~~~iD~Khr~~~~~~~~PlIITtN~~~~~~~~~~~L~SRi~~f~F~~~~ 180 (212)
T 1tue_A 103 --DTKVAMLDDATTTCWTYFDTYMRNALDGNPISIDRKHKPLIQLKCPPILLTTNIHPAKDNRWPYLESRITVFEFPNAF 180 (212)
T ss_dssp --TCSSEEEEEECHHHHHHHHHHCHHHHHTCCEEEC----CCEEECCCCEEEEESSCTTSSSSCHHHHTSCEEEECCSCC
T ss_pred --CCCEEEEECCCchhHHHHHHHHHHHhCCCcccHHHhhcCccccCCCCEEEecCCCcccccchhhhhhhEEEEEcCCCC
Confidence 36799999998432111 234555555532 13578889986 334557899999999987443
No 95
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=98.99 E-value=1.4e-08 Score=94.21 Aligned_cols=165 Identities=10% Similarity=0.045 Sum_probs=103.1
Q ss_pred hhccHHHHHHHHHHHhcCC-----CCcEEEeCCCCccHHHHHHHH-HHHHcCCCCCCcEEEEeCCCCCChHHHHHHHHHH
Q 017884 55 VAAHRDIVDTIDRLTSENR-----LPHLLLYGPPGTGKTSTILAV-ARKLYGAQYHNMILELNASDDRGIDVVRQQIQDF 128 (364)
Q Consensus 55 ~vg~~~~~~~l~~~~~~~~-----~~~lll~G~~G~GKt~la~~l-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 128 (364)
++|++.++..+.-.+-+|. .-|+||.|+||+ ||.+++++ ++.+ . . ..+..+.. .....+...+...
T Consensus 215 I~G~e~vK~aLll~L~GG~~k~rgdihVLL~G~PGt-KS~Lar~i~~~i~-p---R--~~ft~g~~-ss~~gLt~s~r~~ 286 (506)
T 3f8t_A 215 LPGAEEVGKMLALQLFSCVGKNSERLHVLLAGYPVV-CSEILHHVLDHLA-P---R--GVYVDLRR-TELTDLTAVLKED 286 (506)
T ss_dssp STTCHHHHHHHHHHHTTCCSSGGGCCCEEEESCHHH-HHHHHHHHHHHTC-S---S--EEEEEGGG-CCHHHHSEEEEES
T ss_pred cCCCHHHHHHHHHHHcCCccccCCceeEEEECCCCh-HHHHHHHHHHHhC-C---C--eEEecCCC-CCccCceEEEEcC
Confidence 8899998888877776662 127999999999 99999999 5543 1 1 11111110 0000000000000
Q ss_pred HhcCccccCC----ccceEEEEEeCCCCCCHHHHHHHHHHHHHh---------ccCccEEEEeeccc-----------cC
Q 017884 129 ASTQSFSFGV----KASVKLVLLDEADAMTKDAQFALRRVIEKY---------TKNTRFALICNQVN-----------KI 184 (364)
Q Consensus 129 ~~~~~~~~~~----~~~~~viiiDe~~~l~~~~~~~L~~~le~~---------~~~~~~Il~~~~~~-----------~l 184 (364)
+. +.+.. .++++++++||++.+++..+.+|++.|++. +..+.+|.++|... .+
T Consensus 287 --tG-~~~~~G~l~LAdgGvl~lDEIn~~~~~~qsaLlEaMEe~~VtI~G~~lparf~VIAA~NP~~~yd~~~s~~~~~L 363 (506)
T 3f8t_A 287 --RG-WALRAGAAVLADGGILAVDHLEGAPEPHRWALMEAMDKGTVTVDGIALNARCAVLAAINPGEQWPSDPPIARIDL 363 (506)
T ss_dssp --SS-EEEEECHHHHTTTSEEEEECCTTCCHHHHHHHHHHHHHSEEEETTEEEECCCEEEEEECCCC--CCSCGGGGCCS
T ss_pred --CC-cccCCCeeEEcCCCeeehHhhhhCCHHHHHHHHHHHhCCcEEECCEEcCCCeEEEEEeCcccccCCCCCccccCC
Confidence 00 00000 114689999999999999999999999974 55677777887653 77
Q ss_pred chhhhccceE-EEe-c-------------CCChHHHHHHHHHHHH--HcCCCCCHHHHHHHHHH
Q 017884 185 IPALQSRCTR-FRF-A-------------PLEPVHVTERLKHVIE--AEGLDVTEGGLAALVRL 231 (364)
Q Consensus 185 ~~~l~sr~~~-i~~-~-------------~~~~~~~~~~l~~~~~--~~~~~i~~~~~~~l~~~ 231 (364)
.+++.+|+.. +.. . .++.+.+++++.. ++ ...+.+++++.++|+++
T Consensus 364 p~alLDRFDLi~i~~d~pd~e~d~e~~~~~ls~e~L~~yi~~-ar~~~~~p~ls~ea~~yI~~~ 426 (506)
T 3f8t_A 364 DQDFLSHFDLIAFLGVDPRPGEPEEQDTEVPSYTLLRRYLLY-AIREHPAPELTEEARKRLEHW 426 (506)
T ss_dssp CHHHHTTCSEEEETTC--------------CCHHHHHHHHHH-HHHHCSCCEECHHHHHHHHHH
T ss_pred ChHHhhheeeEEEecCCCChhHhhcccCCCCCHHHHHHHHHH-HHhcCCCceeCHHHHHHHHHH
Confidence 8899999833 222 1 2334555555553 33 23677899988888765
No 96
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.98 E-value=6.9e-09 Score=114.90 Aligned_cols=145 Identities=15% Similarity=0.197 Sum_probs=101.4
Q ss_pred HHHHHhcCCCCcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCCCChHHHHHHHHHHHhcCcc----ccCC--
Q 017884 65 IDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSF----SFGV-- 138 (364)
Q Consensus 65 l~~~~~~~~~~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----~~~~-- 138 (364)
+..++..+ .+++|+||||||||++|+.+.... ....+..++.+.......+...+......... .+++
T Consensus 1260 l~~~l~~~--~~vLL~GPpGtGKT~la~~~l~~~----~~~~~~~infsa~ts~~~~~~~i~~~~~~~~~~~g~~~~P~~ 1333 (2695)
T 4akg_A 1260 FYDLLNSK--RGIILCGPPGSGKTMIMNNALRNS----SLYDVVGINFSKDTTTEHILSALHRHTNYVTTSKGLTLLPKS 1333 (2695)
T ss_dssp HHHHHHHT--CEEEEECSTTSSHHHHHHHHHHSC----SSCEEEEEECCTTCCHHHHHHHHHHHBCCEEETTTEEEEEBS
T ss_pred HHHHHHCC--CeEEEECCCCCCHHHHHHHHHhcC----CCCceEEEEeecCCCHHHHHHHHHHHhhhccccCCccccCCC
Confidence 45555555 469999999999999997766553 23556667776665666666666654332110 0111
Q ss_pred ccceEEEEEeCCCCCCH------HHHHHHHHHHHHhc------------cCccEEEEeecc-----ccCchhhhccceEE
Q 017884 139 KASVKLVLLDEADAMTK------DAQFALRRVIEKYT------------KNTRFALICNQV-----NKIIPALQSRCTRF 195 (364)
Q Consensus 139 ~~~~~viiiDe~~~l~~------~~~~~L~~~le~~~------------~~~~~Il~~~~~-----~~l~~~l~sr~~~i 195 (364)
.+.+.|++|||++.... ...+.|+.+++... .++.+|.++|.+ ..+.+++.+||.++
T Consensus 1334 ~gk~~VlFiDEinmp~~d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllRrf~vi 1413 (2695)
T 4akg_A 1334 DIKNLVLFCDEINLPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTRHAAIL 1413 (2695)
T ss_dssp SSSCEEEEEETTTCSCCCSSSCCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHTTEEEE
T ss_pred CCceEEEEecccccccccccCchhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhheeeEE
Confidence 22467999999876542 36777888887411 245677778877 37899999999999
Q ss_pred EecCCChHHHHHHHHHHHHH
Q 017884 196 RFAPLEPVHVTERLKHVIEA 215 (364)
Q Consensus 196 ~~~~~~~~~~~~~l~~~~~~ 215 (364)
.++.|+.+++..++..++..
T Consensus 1414 ~i~~P~~~~l~~I~~~il~~ 1433 (2695)
T 4akg_A 1414 YLGYPSGKSLSQIYEIYYKA 1433 (2695)
T ss_dssp ECCCCTTTHHHHHHHHHHHH
T ss_pred EeCCCCHHHHHHHHHHHHHH
Confidence 99999999999999888764
No 97
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.95 E-value=7.1e-10 Score=99.44 Aligned_cols=131 Identities=17% Similarity=0.182 Sum_probs=74.0
Q ss_pred hhhccCCCCCcchhcc----HHHHHHHHHHHhcCC---CCcEEEeCCCCccHHHHHHHHHHHHc-CCCCCCcEEEEeCCC
Q 017884 43 WVEKYRPQSLADVAAH----RDIVDTIDRLTSENR---LPHLLLYGPPGTGKTSTILAVARKLY-GAQYHNMILELNASD 114 (364)
Q Consensus 43 ~~~~~~p~~~~~~vg~----~~~~~~l~~~~~~~~---~~~lll~G~~G~GKt~la~~l~~~l~-~~~~~~~~~~~~~~~ 114 (364)
+...+++.+|+++++. ..++..+..++.... ..+++|+||+|+|||+++.++++.+. ..+.. +..++..
T Consensus 114 l~~~~~~~tfd~f~~~~~~~~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~--v~~~~~~- 190 (308)
T 2qgz_A 114 LPKSYRHIHLSDIDVNNASRMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVS--TTLLHFP- 190 (308)
T ss_dssp SCGGGGSCCGGGSCCCSHHHHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCC--EEEEEHH-
T ss_pred CCHHHHhCCHhhCcCCChHHHHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCc--EEEEEHH-
Confidence 3455677899999973 335556667777532 35699999999999999999999886 54433 3333322
Q ss_pred CCChHHHHHHHHHHHhcC--ccccCCccceEEEEEeCCCCCC--HHHHHHHH-HHHHHh-ccCccEEEEeecc
Q 017884 115 DRGIDVVRQQIQDFASTQ--SFSFGVKASVKLVLLDEADAMT--KDAQFALR-RVIEKY-TKNTRFALICNQV 181 (364)
Q Consensus 115 ~~~~~~~~~~i~~~~~~~--~~~~~~~~~~~viiiDe~~~l~--~~~~~~L~-~~le~~-~~~~~~Il~~~~~ 181 (364)
.+...+....... ...+.......+|+|||++... ...++.|+ .+++.. .....+|++||.+
T Consensus 191 -----~l~~~l~~~~~~~~~~~~~~~~~~~~lLiiDdig~~~~~~~~~~~ll~~ll~~r~~~~~~~IitSN~~ 258 (308)
T 2qgz_A 191 -----SFAIDVKNAISNGSVKEEIDAVKNVPVLILDDIGAEQATSWVRDEVLQVILQYRMLEELPTFFTSNYS 258 (308)
T ss_dssp -----HHHHHHHCCCC----CCTTHHHHTSSEEEEETCCC------CTTTTHHHHHHHHHHHTCCEEEEESSC
T ss_pred -----HHHHHHHHHhccchHHHHHHHhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHHHCCCcEEEECCCC
Confidence 1111111100000 0000000135699999996653 23334343 366653 3466788888743
No 98
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=98.71 E-value=1.5e-07 Score=92.21 Aligned_cols=184 Identities=13% Similarity=0.127 Sum_probs=105.0
Q ss_pred CCCCCcchhccHHHHHHHHHHHhcC--CCCcEEEeCCCCccHHHHHHHHHHHHc--CCCCCCcEEEEeCCCCCChHHHHH
Q 017884 48 RPQSLADVAAHRDIVDTIDRLTSEN--RLPHLLLYGPPGTGKTSTILAVARKLY--GAQYHNMILELNASDDRGIDVVRQ 123 (364)
Q Consensus 48 ~p~~~~~~vg~~~~~~~l~~~~~~~--~~~~lll~G~~G~GKt~la~~l~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~ 123 (364)
-|.....++|++..+..|...+... ....+.|+|++|+|||++|..+++... ...+...+..++.... ....+..
T Consensus 119 ~P~~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~~~~~ 197 (591)
T 1z6t_A 119 VPQRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGLLM 197 (591)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHHHHHH
T ss_pred CCCCCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC-chHHHHH
Confidence 3556677999999999999998743 223379999999999999999875320 1112222333332221 1122222
Q ss_pred HHHHHHhcCc-------cc--------------cCCccceEEEEEeCCCCCCHHHHHHHHHHHHHhccCccEEEEeeccc
Q 017884 124 QIQDFASTQS-------FS--------------FGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVN 182 (364)
Q Consensus 124 ~i~~~~~~~~-------~~--------------~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~ 182 (364)
.+........ .. .....++-+|||||++.. . .++..+..+.+|++|....
T Consensus 198 ~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~--~-------~l~~l~~~~~ilvTsR~~~ 268 (591)
T 1z6t_A 198 KLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDS--W-------VLKAFDSQCQILLTTRDKS 268 (591)
T ss_dssp HHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCH--H-------HHHTTCSSCEEEEEESCGG
T ss_pred HHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCH--H-------HHHHhcCCCeEEEECCCcH
Confidence 2221111000 00 000013579999999752 1 2334466777888775433
Q ss_pred cCchhhhccceEEEe---cCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHH
Q 017884 183 KIIPALQSRCTRFRF---APLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQS 245 (364)
Q Consensus 183 ~l~~~l~sr~~~i~~---~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~a~~~l~~ 245 (364)
- ..... ...+.+ .+++.++..+++...+.... .-.++.+..|++.++|.|-.+......
T Consensus 269 ~-~~~~~--~~~~~v~~l~~L~~~ea~~L~~~~~~~~~-~~~~~~~~~i~~~~~G~PLal~~~a~~ 330 (591)
T 1z6t_A 269 V-TDSVM--GPKYVVPVESSLGKEKGLEILSLFVNMKK-ADLPEQAHSIIKECKGSPLVVSLIGAL 330 (591)
T ss_dssp G-GTTCC--SCEEEEECCSSCCHHHHHHHHHHHHTSCG-GGSCTHHHHHHHHHTTCHHHHHHHHHH
T ss_pred H-HHhcC--CCceEeecCCCCCHHHHHHHHHHHhCCCc-ccccHHHHHHHHHhCCCcHHHHHHHHH
Confidence 1 11111 223333 48999999999988764311 112456788999999998766544443
No 99
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.56 E-value=2.1e-06 Score=95.55 Aligned_cols=166 Identities=16% Similarity=0.250 Sum_probs=111.7
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCCCChHHHHHHHHHHHhcCccccCCcc
Q 017884 61 IVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKA 140 (364)
Q Consensus 61 ~~~~l~~~~~~~~~~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 140 (364)
....+...+..+ -+.++.||+|+|||++++.+|+.+ +..++.+++++......+...+...+.
T Consensus 634 ~~~tl~~Al~~~--~~~~l~GpaGtGKTe~vk~LA~~l-----g~~~v~~nc~e~ld~~~lg~~~~g~~~---------- 696 (2695)
T 4akg_A 634 GFATLTDSLHQK--YGGCFFGPAGTGKTETVKAFGQNL-----GRVVVVFNCDDSFDYQVLSRLLVGITQ---------- 696 (2695)
T ss_dssp HHHHHHHHHHTT--CEEEEECCTTSCHHHHHHHHHHTT-----TCCCEEEETTSSCCHHHHHHHHHHHHH----------
T ss_pred HHHHHHHHHHhC--CCCcccCCCCCCcHHHHHHHHHHh-----CCcEEEEECCCCCChhHhhHHHHHHHh----------
Confidence 334455555544 247899999999999999999998 556678898887766666555555443
Q ss_pred ceEEEEEeCCCCCCHHHHHHHHHH-------HHHh-------------ccCccEEEEee----ccccCchhhhccceEEE
Q 017884 141 SVKLVLLDEADAMTKDAQFALRRV-------IEKY-------------TKNTRFALICN----QVNKIIPALQSRCTRFR 196 (364)
Q Consensus 141 ~~~viiiDe~~~l~~~~~~~L~~~-------le~~-------------~~~~~~Il~~~----~~~~l~~~l~sr~~~i~ 196 (364)
.+..+++||++.+..+....+... +.+. .+++.++++.| ....+++.+++||..+.
T Consensus 697 ~Gaw~~~DE~nr~~~evLs~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NPgy~g~~eLP~~Lk~~Fr~v~ 776 (2695)
T 4akg_A 697 IGAWGCFDEFNRLDEKVLSAVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNPGYNGRSELPENLKKSFREFS 776 (2695)
T ss_dssp HTCEEEEETTTSSCHHHHHHHHHHHHHHHHHHHHTCSEEECSSSEEECCTTCEEEEEECCCSSSSCCCCHHHHTTEEEEE
T ss_pred cCCEeeehhhhhcChHHHHHHHHHHHHHHHHHHcCCcEEeeCCcEEecCCCceEEEEeCCCccCcccccHHHHhheEEEE
Confidence 256999999999999887776333 3221 12344555555 23468899999999999
Q ss_pred ecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-------c------CCCHHHHHHHHHHH
Q 017884 197 FAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRL-------C------NGDMRKALNILQST 246 (364)
Q Consensus 197 ~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~-------~------~g~~r~a~~~l~~~ 246 (364)
+..|+.+.+.+++... .|....+.....++.. . +..+|.+...|..+
T Consensus 777 m~~Pd~~~i~ei~l~s---~Gf~~a~~la~kiv~~~~l~~e~ls~q~hydfglRalksvL~~a 836 (2695)
T 4akg_A 777 MKSPQSGTIAEMILQI---MGFEDSKSLASKIVHFLELLSSKCSSMNHYHFGLRTLKGVLRNC 836 (2695)
T ss_dssp CCCCCHHHHHHHHHHH---HHCSSHHHHHHHHHHHHHHHHHHSCCCTTCCCSHHHHHHHHHHH
T ss_pred eeCCCHHHHHHHHHHh---cCCCchHHHHHHHHHHHHHHHHHhCcCCcccccHHHHHHHHHHH
Confidence 9999988888876432 3554444444433321 1 23577777766543
No 100
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.53 E-value=9.1e-07 Score=99.04 Aligned_cols=178 Identities=17% Similarity=0.171 Sum_probs=115.4
Q ss_pred HHHHHHhcCCCCcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCCCChHHHHHHHHHHHhcC------ccccC
Q 017884 64 TIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQ------SFSFG 137 (364)
Q Consensus 64 ~l~~~~~~~~~~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~------~~~~~ 137 (364)
.+..++..+ .+++|+||+|+|||.++..+...+ ....++.++.+.......+...+....... +. ++
T Consensus 1296 ll~~ll~~~--~pvLL~GptGtGKT~li~~~L~~l----~~~~~~~infS~~Tta~~l~~~~e~~~e~~~~~~~G~~-~~ 1368 (3245)
T 3vkg_A 1296 VLHAWLSEH--RPLILCGPPGSGKTMTLTSTLRAF----PDFEVVSLNFSSATTPELLLKTFDHHCEYKRTPSGETV-LR 1368 (3245)
T ss_dssp HHHHHHHTT--CCCEEESSTTSSHHHHHHHHGGGC----TTEEEEEECCCTTCCHHHHHHHHHHHEEEEECTTSCEE-EE
T ss_pred HHHHHHHCC--CcEEEECCCCCCHHHHHHHHHHhC----CCCceEEEEeeCCCCHHHHHHHHhhcceEEeccCCCcc-cC
Confidence 345555555 459999999999998887665554 234566778777666667766666543211 11 22
Q ss_pred C--ccceEEEEEeCCCCCCH------HHHHHHHHHHHHh------------ccCccEEEEeecc-----ccCchhhhccc
Q 017884 138 V--KASVKLVLLDEADAMTK------DAQFALRRVIEKY------------TKNTRFALICNQV-----NKIIPALQSRC 192 (364)
Q Consensus 138 ~--~~~~~viiiDe~~~l~~------~~~~~L~~~le~~------------~~~~~~Il~~~~~-----~~l~~~l~sr~ 192 (364)
+ .++..|++|||++.-.. ...+.|+.+++.. ..++.+|.++|++ ..+.+.+.+||
T Consensus 1369 p~~~Gk~~VlFiDDiNmp~~D~yGtQ~~ielLrqlld~~g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l~~Rf~r~F 1448 (3245)
T 3vkg_A 1369 PTQLGKWLVVFCDEINLPSTDKYGTQRVITFIRQMVEKGGFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHRFLRHA 1448 (3245)
T ss_dssp ESSTTCEEEEEETTTTCCCCCTTSCCHHHHHHHHHHHHSEEEETTTTEEEEESSEEEEEEECCTTSTTCCCCCHHHHTTC
T ss_pred CCcCCceEEEEecccCCCCccccccccHHHHHHHHHHcCCeEECCCCeEEEecCeEEEEEcCCCCCCCCccCCHHHHhhc
Confidence 2 13456999999976653 3677888888852 1345567777765 35889999999
Q ss_pred eEEEecCCChHHHHHHHHHHHHHcCC------CCCHHHHHHHHHH---------------cCCCHHHHHHHHHHHHH
Q 017884 193 TRFRFAPLEPVHVTERLKHVIEAEGL------DVTEGGLAALVRL---------------CNGDMRKALNILQSTHM 248 (364)
Q Consensus 193 ~~i~~~~~~~~~~~~~l~~~~~~~~~------~i~~~~~~~l~~~---------------~~g~~r~a~~~l~~~~~ 248 (364)
.++.++.|+.+++..+...+....-- .+.+..++..++. .--|+|.+-..++.+..
T Consensus 1449 ~vi~i~~ps~esL~~If~til~~~l~~~p~l~~~~~~lv~ati~ly~~v~~~~lp~~k~HY~FnLRDLsrv~qGll~ 1525 (3245)
T 3vkg_A 1449 PILLVDFPSTSSLTQIYGTFNRALMKLLPNLRSFADNLTDAMVEFYSESQKRFTPDIQAHYIYSPRELSRWDRALLE 1525 (3245)
T ss_dssp CEEECCCCCHHHHHHHHHHHHHHHTTSCGGGTTSHHHHHHHHHHHHHHHHHHSCTTTSTTCCCCHHHHHHHHHHHHH
T ss_pred eEEEeCCCCHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCccccHHHHHHHHHHHHH
Confidence 99999999999999987766543210 1123333333321 12488888888776554
No 101
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=98.50 E-value=4e-06 Score=88.95 Aligned_cols=188 Identities=13% Similarity=0.134 Sum_probs=109.8
Q ss_pred CCCCCcchhccHHHHHHHHHHHhcCC--CCcEEEeCCCCccHHHHHHHHHHHH--cCCCCCCcEEEEeCCCCCChHH---
Q 017884 48 RPQSLADVAAHRDIVDTIDRLTSENR--LPHLLLYGPPGTGKTSTILAVARKL--YGAQYHNMILELNASDDRGIDV--- 120 (364)
Q Consensus 48 ~p~~~~~~vg~~~~~~~l~~~~~~~~--~~~lll~G~~G~GKt~la~~l~~~l--~~~~~~~~~~~~~~~~~~~~~~--- 120 (364)
-|.....++|++..+..|...+.... ...+.|+|+.|+|||++|..+++.. ....+...++.++.........
T Consensus 119 ~p~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 198 (1249)
T 3sfz_A 119 VPQRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMK 198 (1249)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHH
T ss_pred CCCCCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHH
Confidence 45566779999999999999986432 2237999999999999999887652 1222333344444433211111
Q ss_pred HHHHHHHHHhcCcc-----------------ccCCccceEEEEEeCCCCCCHHHHHHHHHHHHHhccCccEEEEeecccc
Q 017884 121 VRQQIQDFASTQSF-----------------SFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNK 183 (364)
Q Consensus 121 ~~~~i~~~~~~~~~-----------------~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~ 183 (364)
+............. ......++-+||||+++.. . .++...+.+++|++|....-
T Consensus 199 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~--~-------~~~~~~~~~~ilvTtR~~~~ 269 (1249)
T 3sfz_A 199 LQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDP--W-------VLKAFDNQCQILLTTRDKSV 269 (1249)
T ss_dssp HHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCH--H-------HHTTTCSSCEEEEEESSTTT
T ss_pred HHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCH--H-------HHHhhcCCCEEEEEcCCHHH
Confidence 11111111100000 0011113679999999853 1 22334567788888865432
Q ss_pred CchhhhccceEEEecC-CChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Q 017884 184 IIPALQSRCTRFRFAP-LEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQST 246 (364)
Q Consensus 184 l~~~l~sr~~~i~~~~-~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~a~~~l~~~ 246 (364)
..........+.+.+ ++.++..+.+...+...... .++....|++.++|-|-.+......+
T Consensus 270 -~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~~~~-~~~~~~~i~~~~~glPLal~~~~~~l 331 (1249)
T 3sfz_A 270 -TDSVMGPKHVVPVESGLGREKGLEILSLFVNMKKED-LPAEAHSIIKECKGSPLVVSLIGALL 331 (1249)
T ss_dssp -TTTCCSCBCCEECCSSCCHHHHHHHHHHHHTSCSTT-CCTHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred -HHhhcCCceEEEecCCCCHHHHHHHHHHhhCCChhh-CcHHHHHHHHHhCCCHHHHHHHHHHh
Confidence 212222345677775 99999999988776433222 23567889999999776554443333
No 102
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=98.50 E-value=1.3e-06 Score=84.65 Aligned_cols=177 Identities=18% Similarity=0.171 Sum_probs=101.8
Q ss_pred hccHHHHHHHHHHHhcC---CCCcEEEeCCCCccHHHHHHHHHH---HHcCCCCCCcEEEEeCCCCC--ChH-HHHHHHH
Q 017884 56 AAHRDIVDTIDRLTSEN---RLPHLLLYGPPGTGKTSTILAVAR---KLYGAQYHNMILELNASDDR--GID-VVRQQIQ 126 (364)
Q Consensus 56 vg~~~~~~~l~~~~~~~---~~~~lll~G~~G~GKt~la~~l~~---~l~~~~~~~~~~~~~~~~~~--~~~-~~~~~i~ 126 (364)
+|++..+..|..++..+ ....+.|+|+.|+|||++|+.+++ .-....+ ...+.++.+... +.. .....+.
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F-~~~~wv~vs~~~~~~~~~~~~~il~ 209 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINY-DSIVWLKDSGTAPKSTFDLFTDILL 209 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTB-SEEEEEECCCCSTTHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccC-CcEEEEEECCCCCCCHHHHHHHHHH
Confidence 49999999999998654 223379999999999999999997 2222223 233344444322 122 2222222
Q ss_pred HHHhcC---cc-ccCC--------------ccc-eEEEEEeCCCCCCHHHHHHHHHHHHHhccCccEEEEeeccccCchh
Q 017884 127 DFASTQ---SF-SFGV--------------KAS-VKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPA 187 (364)
Q Consensus 127 ~~~~~~---~~-~~~~--------------~~~-~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~l~~~ 187 (364)
...... .. .... .++ +-+||+|++..... . .+ ... ..+++|+||.... +...
T Consensus 210 ~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~--~-~~----~~~-~gs~ilvTTR~~~-v~~~ 280 (549)
T 2a5y_B 210 MLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEET--I-RW----AQE-LRLRCLVTTRDVE-ISNA 280 (549)
T ss_dssp HHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHH--H-HH----HHH-TTCEEEEEESBGG-GGGG
T ss_pred HHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchh--h-cc----ccc-CCCEEEEEcCCHH-HHHH
Confidence 222110 00 0000 123 67999999987421 1 11 111 4677777775432 2211
Q ss_pred hhccceEEEecCCChHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHH
Q 017884 188 LQSRCTRFRFAPLEPVHVTERLKHVIEAEGL-DVTEGGLAALVRLCNGDMRKALNI 242 (364)
Q Consensus 188 l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~-~i~~~~~~~l~~~~~g~~r~a~~~ 242 (364)
.......+.+++++.++..+++...+..... .-.++....|++.++|.|-.+...
T Consensus 281 ~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~GlPLAl~~~ 336 (549)
T 2a5y_B 281 ASQTCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNPATLMMF 336 (549)
T ss_dssp CCSCEEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCCCeEEECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCChHHHHHH
Confidence 1112356899999999999888876422111 111345788999999987665543
No 103
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=98.35 E-value=4.3e-07 Score=75.66 Aligned_cols=60 Identities=10% Similarity=0.094 Sum_probs=40.2
Q ss_pred ceEEEEEeCCCCCCH---HHH--HHHHHHHHHhcc-CccEEEEeeccccCchhhhccc-eEEEecCC
Q 017884 141 SVKLVLLDEADAMTK---DAQ--FALRRVIEKYTK-NTRFALICNQVNKIIPALQSRC-TRFRFAPL 200 (364)
Q Consensus 141 ~~~viiiDe~~~l~~---~~~--~~L~~~le~~~~-~~~~Il~~~~~~~l~~~l~sr~-~~i~~~~~ 200 (364)
.+.||+|||++.+.+ ... ..++..++.... ...+|+++..+..+...+++|+ ..+++.++
T Consensus 87 ~~~vliIDEAq~l~~~~~~~~e~~rll~~l~~~r~~~~~iil~tq~~~~l~~~lr~ri~~~~~l~~~ 153 (199)
T 2r2a_A 87 IGSIVIVDEAQDVWPARSAGSKIPENVQWLNTHRHQGIDIFVLTQGPKLLDQNLRTLVRKHYHIASN 153 (199)
T ss_dssp TTCEEEETTGGGTSBCCCTTCCCCHHHHGGGGTTTTTCEEEEEESCGGGBCHHHHTTEEEEEEEEEC
T ss_pred CceEEEEEChhhhccCccccchhHHHHHHHHhcCcCCeEEEEECCCHHHHhHHHHHHhheEEEEcCc
Confidence 377999999999832 111 134444444332 3458889988889999999997 55667663
No 104
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.34 E-value=2e-06 Score=70.35 Aligned_cols=69 Identities=13% Similarity=0.243 Sum_probs=48.5
Q ss_pred ceEEEEEeCCC---CCCHHHHHHHHHHHHHhccCccEEEEee--ccccCchhhhcc--ceEEEecCCChHHHHHHHHH
Q 017884 141 SVKLVLLDEAD---AMTKDAQFALRRVIEKYTKNTRFALICN--QVNKIIPALQSR--CTRFRFAPLEPVHVTERLKH 211 (364)
Q Consensus 141 ~~~viiiDe~~---~l~~~~~~~L~~~le~~~~~~~~Il~~~--~~~~l~~~l~sr--~~~i~~~~~~~~~~~~~l~~ 211 (364)
++.++++||++ .+.....+.+.+++++. .+.+|++++ ....+...+.+| +.++++.+.+.+++...+..
T Consensus 99 ~p~llilDEigp~~~ld~~~~~~l~~~l~~~--~~~~i~~~H~~h~~~~~~~i~~r~~~~i~~~~~~~r~~~~~~l~~ 174 (178)
T 1ye8_A 99 RRKVIIIDEIGKMELFSKKFRDLVRQIMHDP--NVNVVATIPIRDVHPLVKEIRRLPGAVLIELTPENRDVILEDILS 174 (178)
T ss_dssp TTCEEEECCCSTTGGGCHHHHHHHHHHHTCT--TSEEEEECCSSCCSHHHHHHHTCTTCEEEECCTTTTTTHHHHHHH
T ss_pred CCCEEEEeCCCCcccCCHHHHHHHHHHHhcC--CCeEEEEEccCCCchHHHHHHhcCCcEEEEecCcCHHHHHHHHHH
Confidence 47799999954 34567788888888862 343666663 334566677777 78999988887777665543
No 105
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=98.28 E-value=6.5e-07 Score=73.75 Aligned_cols=114 Identities=11% Similarity=0.114 Sum_probs=60.4
Q ss_pred EEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCCCChHHHHHH------------HHHHHhcCccccCCccceEE
Q 017884 77 LLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQ------------IQDFASTQSFSFGVKASVKL 144 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~------------i~~~~~~~~~~~~~~~~~~v 144 (364)
.+++||+|+|||+++..++..+...+....++........+...+... ..++... .. .+..+
T Consensus 6 ~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~~~~d~r~~~~~i~s~~g~~~~~~~~~~~~~~~~~----~~--~~~dv 79 (184)
T 2orw_A 6 TVITGPMYSGKTTELLSFVEIYKLGKKKVAVFKPKIDSRYHSTMIVSHSGNGVEAHVIERPEEMRKY----IE--EDTRG 79 (184)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEEEC-----CCCEECC----CEECEEESSGGGGGGG----CC--TTEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeeccccccCcccEEecCCCceeeEEECCHHHHHHH----hc--CCCCE
Confidence 689999999999999777766543333222221111000000000000 0011110 11 14789
Q ss_pred EEEeCCCCCCHHHHHHHHHHHHHhccCccEEEEee------ccccCchhhhccc-eEEEecC
Q 017884 145 VLLDEADAMTKDAQFALRRVIEKYTKNTRFALICN------QVNKIIPALQSRC-TRFRFAP 199 (364)
Q Consensus 145 iiiDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~------~~~~l~~~l~sr~-~~i~~~~ 199 (364)
|+|||++.++++..+.|..+.+. +..+|+++. .+....+.+.+++ .+.++..
T Consensus 80 viIDE~Q~~~~~~~~~l~~l~~~---~~~Vi~~Gl~~~f~~~~f~~~~~ll~~ad~v~~l~~ 138 (184)
T 2orw_A 80 VFIDEVQFFNPSLFEVVKDLLDR---GIDVFCAGLDLTHKQNPFETTALLLSLADTVIKKKA 138 (184)
T ss_dssp EEECCGGGSCTTHHHHHHHHHHT---TCEEEEEEESBCTTSCBCHHHHHHHHHCSEEEECCB
T ss_pred EEEECcccCCHHHHHHHHHHHHC---CCCEEEEeeccccccCCccchHHHHHHhhheEEeee
Confidence 99999999987777777666654 555666664 2234445666666 3444433
No 106
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=98.26 E-value=1.9e-05 Score=80.26 Aligned_cols=148 Identities=16% Similarity=0.124 Sum_probs=83.2
Q ss_pred hccHHHHHHHHHHHhcC-CCCcEEEeCCCCccHHHHHHHHHHHH-cCCCCCCcEEEEeCCCCCChHHHHHHHHHHHhcCc
Q 017884 56 AAHRDIVDTIDRLTSEN-RLPHLLLYGPPGTGKTSTILAVARKL-YGAQYHNMILELNASDDRGIDVVRQQIQDFASTQS 133 (364)
Q Consensus 56 vg~~~~~~~l~~~~~~~-~~~~lll~G~~G~GKt~la~~l~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 133 (364)
+|++..+..|..++... ..+.+.|+|+.|+|||++|+.+++.. ....+...++.++.+.......+...+........
T Consensus 131 VGRe~eLeeL~elL~~~d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL~~i~ 210 (1221)
T 1vt4_I 131 VSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQID 210 (1221)
T ss_dssp CCCHHHHHHHHHHHHHCCSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHHHHHHHC
T ss_pred CCcHHHHHHHHHHHhccCCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHhhcC
Confidence 89999999999998763 33347999999999999999998631 01112222334443333222222222222110000
Q ss_pred ------c-------------------cc-CCccceEEEEEeCCCCCCHHHHHHHHHHHHHhccCccEEEEeeccccCchh
Q 017884 134 ------F-------------------SF-GVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPA 187 (364)
Q Consensus 134 ------~-------------------~~-~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~l~~~ 187 (364)
. .+ ....++-+||+||++. .... +..+..+++|++|...... ..
T Consensus 211 ~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd--~eqL-------e~f~pGSRILVTTRd~~Va-~~ 280 (1221)
T 1vt4_I 211 PNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQN--AKAW-------NAFNLSCKILLTTRFKQVT-DF 280 (1221)
T ss_dssp SSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCC--HHHH-------HHHHSSCCEEEECSCSHHH-HH
T ss_pred cccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcCh--HHHH-------HhhCCCeEEEEeccChHHH-Hh
Confidence 0 00 0012467999999988 2222 2224678888888654321 11
Q ss_pred hhc-cceEEEec----CCChHHHHHHHHHHH
Q 017884 188 LQS-RCTRFRFA----PLEPVHVTERLKHVI 213 (364)
Q Consensus 188 l~s-r~~~i~~~----~~~~~~~~~~l~~~~ 213 (364)
+.. +...+.++ +++.++..+++....
T Consensus 281 l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~ 311 (1221)
T 1vt4_I 281 LSAATTTHISLDHHSMTLTPDEVKSLLLKYL 311 (1221)
T ss_dssp HHHHSSCEEEECSSSSCCCHHHHHHHHHHHH
T ss_pred cCCCeEEEecCccccCCcCHHHHHHHHHHHc
Confidence 111 12344444 789999999888764
No 107
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.11 E-value=5.9e-05 Score=84.85 Aligned_cols=167 Identities=15% Similarity=0.189 Sum_probs=111.3
Q ss_pred HHHHHHHHHHhcCCCCcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCCCChHHHHHHHHHHHhcCccccCCc
Q 017884 60 DIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVK 139 (364)
Q Consensus 60 ~~~~~l~~~~~~~~~~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 139 (364)
.-.-.|..++..+. ...+.||+|+|||.+++.+++.+ +..++.+|+++......+...+...+.
T Consensus 592 rcy~tl~~Al~~~~--gg~~~GPaGtGKTet~k~La~~l-----gr~~~vfnC~~~~d~~~~g~i~~G~~~--------- 655 (3245)
T 3vkg_A 592 RCYLTLTQALESRM--GGNPFGPAGTGKTETVKALGSQL-----GRFVLVFCCDEGFDLQAMSRIFVGLCQ--------- 655 (3245)
T ss_dssp HHHHHHHHHHHTTC--EEEEECSTTSSHHHHHHHHHHHT-----TCCEEEEECSSCCCHHHHHHHHHHHHH---------
T ss_pred HHHHHHHHHHHhcC--CCCCCCCCCCCHHHHHHHHHHHh-----CCeEEEEeCCCCCCHHHHHHHHhhHhh---------
Confidence 33445555565542 24688999999999999999998 456677888876665555554555443
Q ss_pred cceEEEEEeCCCCCCHHHHHHHHHHHH-------Hh--------------ccCccEEEEeec----cccCchhhhccceE
Q 017884 140 ASVKLVLLDEADAMTKDAQFALRRVIE-------KY--------------TKNTRFALICNQ----VNKIIPALQSRCTR 194 (364)
Q Consensus 140 ~~~~viiiDe~~~l~~~~~~~L~~~le-------~~--------------~~~~~~Il~~~~----~~~l~~~l~sr~~~ 194 (364)
.+...++||++++..+....+...+. .. .+++.++++.|+ ...+++.+++||..
T Consensus 656 -~GaW~cfDEfNrl~~~vLSvv~~qi~~I~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNpgY~gr~eLP~nLk~lFr~ 734 (3245)
T 3vkg_A 656 -CGAWGCFDEFNRLEERILSAVSQQIQTIQVALKENSKEVELLGGKNISLHQDMGIFVTMNPGYAGRSNLPDNLKKLFRS 734 (3245)
T ss_dssp -HTCEEEEETTTSSCHHHHHHHHHHHHHHHHHHHHTCSEECCC---CEECCTTCEEEECBCCCGGGCCCSCHHHHTTEEE
T ss_pred -cCcEEEehhhhcCCHHHHHHHHHHHHHHHHHHHcCCCeEEecCCCEEeecCCeEEEEEeCCCccCcccChHHHHhhcEE
Confidence 25588999999999887766655444 11 123445555553 35789999999999
Q ss_pred EEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-------------cCCCHHHHHHHHHHH
Q 017884 195 FRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRL-------------CNGDMRKALNILQST 246 (364)
Q Consensus 195 i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~-------------~~g~~r~a~~~l~~~ 246 (364)
+.+..|+.+.+.+++.. ..|+.-.......++.. .+-.+|.+...|..+
T Consensus 735 v~m~~Pd~~~i~ei~L~---s~Gf~~a~~La~k~~~~~~l~~e~LS~Q~HYDfGLRalKsVL~~A 796 (3245)
T 3vkg_A 735 MAMIKPDREMIAQVMLY---SQGFKTAEVLAGKIVPLFKLCQEQLSAQSHYDFGLRALKSVLVSA 796 (3245)
T ss_dssp EECCSCCHHHHHHHHHH---TTTCSCHHHHHHHHHHHHHHHHHSSCCCTTCCCSHHHHHHHHHHH
T ss_pred EEEeCCCHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHH
Confidence 99999999888887643 44654333333333321 123478888777554
No 108
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.05 E-value=2.7e-05 Score=69.07 Aligned_cols=65 Identities=14% Similarity=0.237 Sum_probs=39.2
Q ss_pred EEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEE------eCCCCCChHHHHHHHHHHHhcCccccCCccceEEEEEeCC
Q 017884 77 LLLYGPPGTGKTSTILAVARKLYGAQYHNMILEL------NASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEA 150 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~------~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~ 150 (364)
++|+||||+|||+++.+++... +....++.. +... ...+.....+.+.... .. +||||++
T Consensus 126 iLI~GpPGsGKTtLAlqlA~~~---G~~VlyIs~~~eE~v~~~~-~~le~~l~~i~~~l~~---------~~-LLVIDsI 191 (331)
T 2vhj_A 126 VIVTGKGNSGKTPLVHALGEAL---GGKDKYATVRFGEPLSGYN-TDFNVFVDDIARAMLQ---------HR-VIVIDSL 191 (331)
T ss_dssp EEEECSCSSSHHHHHHHHHHHH---HTTSCCEEEEBSCSSTTCB-CCHHHHHHHHHHHHHH---------CS-EEEEECC
T ss_pred EEEEcCCCCCHHHHHHHHHHhC---CCCEEEEEecchhhhhhhh-cCHHHHHHHHHHHHhh---------CC-EEEEecc
Confidence 6999999999999999999872 223334444 1111 1223332223222221 13 9999999
Q ss_pred CCCCH
Q 017884 151 DAMTK 155 (364)
Q Consensus 151 ~~l~~ 155 (364)
+.+..
T Consensus 192 ~aL~~ 196 (331)
T 2vhj_A 192 KNVIG 196 (331)
T ss_dssp TTTC-
T ss_pred ccccc
Confidence 99853
No 109
>1jql_B DNA polymerase III, delta subunit; processivity clamp, clamp loader, DNA replication, AAA+ ATPase, transferase; HET: DNA; 2.50A {Escherichia coli} SCOP: c.37.1.20
Probab=98.00 E-value=7.2e-05 Score=58.43 Aligned_cols=122 Identities=14% Similarity=0.049 Sum_probs=80.2
Q ss_pred HHHhcCCCCcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCCCChHHHHHHHHHHHhcCccccCCccceEEEE
Q 017884 67 RLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVL 146 (364)
Q Consensus 67 ~~~~~~~~~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~vii 146 (364)
..++++-.|.++|||+.-.-....+..+.+.+...+.. +.+.....+...+. .+.+.+.+.|+ |+. +++|+
T Consensus 11 ~~l~~~~~pvyll~G~E~~l~~~~~~~i~~~~~~~~~~----e~~~~~~~~~~~~~-~l~~~~~s~sl-F~~---rrlV~ 81 (140)
T 1jql_B 11 AQLNEGLRAAYLLLGNDPLLLQESQDAVRQVAAAQGFE----EHHTFSIDPNTDWN-AIFSLCQAMSL-FAS---RQTLL 81 (140)
T ss_dssp HHHHHCCCSEEEEESSCHHHHHHHHHHHHHHHHHTTCC----EEECCCCSTTCCHH-HHHHHHHCCCT-TCC---CEEEE
T ss_pred HHHhccCCceEEEEcCcHHHHHHHHHHHHHHHHHCCCc----ceeEEEecCCCCHH-HHHHHHhcCCC-CCC---CEEEE
Confidence 33444444558999999888888888887776543322 22222211112223 34455777787 776 89999
Q ss_pred EeCCCC-CCHHHHHHHHHHHHHhccCccEEEEeecc------ccCchhhhccceEEEe
Q 017884 147 LDEADA-MTKDAQFALRRVIEKYTKNTRFALICNQV------NKIIPALQSRCTRFRF 197 (364)
Q Consensus 147 iDe~~~-l~~~~~~~L~~~le~~~~~~~~Il~~~~~------~~l~~~l~sr~~~i~~ 197 (364)
|.+.+. +.++..+.|..+++.+++++.+|++.... .++.+.+...+.++.+
T Consensus 82 v~~~~~~~~~~~~~~L~~yl~~p~~~~~lvi~~~kld~~~~~~k~~k~l~k~g~~v~~ 139 (140)
T 1jql_B 82 LLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTC 139 (140)
T ss_dssp EECCTTCSCTTHHHHHHHHHHHCCSSCCEEEECSSCCTTGGGSHHHHHHGGGCEEEEC
T ss_pred EECCCCCCChHHHHHHHHHHhcCCCCEEEEEEeCCcChhHHhhHHHHHHHhCeEEEEe
Confidence 999765 56677788999999999999999987432 2455666666666654
No 110
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.89 E-value=7.8e-06 Score=69.16 Aligned_cols=95 Identities=14% Similarity=0.169 Sum_probs=53.6
Q ss_pred EEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCC--------CCCCh-------HHHHHHHHHHHhcCccccCCccc
Q 017884 77 LLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNAS--------DDRGI-------DVVRQQIQDFASTQSFSFGVKAS 141 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~--------~~~~~-------~~~~~~i~~~~~~~~~~~~~~~~ 141 (364)
++++||+|+||||++..++..+...+....++...-. ...+. ....+ +....... . ....
T Consensus 15 ~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~~~~i~srlG~~~~~~~~~~~~~-i~~~i~~~---~-~~~~ 89 (223)
T 2b8t_A 15 EFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSRTGTSLPSVEVESAPE-ILNYIMSN---S-FNDE 89 (223)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCCCCCCCSSCCEEESSTHH-HHHHHHST---T-SCTT
T ss_pred EEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchHHHHHHHhcCCCccccccCCHHH-HHHHHHHH---h-hCCC
Confidence 6999999999999999888887555443333321110 00010 00011 11111110 0 0114
Q ss_pred eEEEEEeCCCCCCHHHHHHHHHHHHHhccCccEEEEee
Q 017884 142 VKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICN 179 (364)
Q Consensus 142 ~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~ 179 (364)
+.+|+|||++.+..+..+.+..+.+ . ...+|+++.
T Consensus 90 ~dvViIDEaQ~l~~~~ve~l~~L~~-~--gi~Vil~Gl 124 (223)
T 2b8t_A 90 TKVIGIDEVQFFDDRICEVANILAE-N--GFVVIISGL 124 (223)
T ss_dssp CCEEEECSGGGSCTHHHHHHHHHHH-T--TCEEEEECC
T ss_pred CCEEEEecCccCcHHHHHHHHHHHh-C--CCeEEEEec
Confidence 7899999999998776555544333 2 566777774
No 111
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=97.78 E-value=9.3e-05 Score=62.20 Aligned_cols=157 Identities=18% Similarity=0.211 Sum_probs=83.0
Q ss_pred EEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCCCChHHHHHHHHHHHhcCcc---cc-----C-------Cccc
Q 017884 77 LLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSF---SF-----G-------VKAS 141 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~-----~-------~~~~ 141 (364)
+++.|++|+|||+++-.++..+...+....++.++.. .... .-..+... ...+. .+ . -...
T Consensus 9 I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~q--~~~~-~~al~~gl-~~~~~~~~~~~~~~~~e~~l~~~L~~~ 84 (228)
T 2r8r_A 9 VFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVETH--GRAE-TEALLNGL-PQQPLLRTEYRGMTLEEMDLDALLKAA 84 (228)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCT--TCHH-HHHHHTTS-CBCCCEEEEETTEEEEECCHHHHHHHC
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCCC--CChh-HHHHhcCc-cccCcceeecCCcccccccHHHHHhcC
Confidence 8999999999999999999998766655444444332 1111 11111111 00000 00 0 0014
Q ss_pred eEEEEEeCCCCCCHH-H--HHHHHHHHHHhccCccEEEEeecc------------------ccCchhhhccceEEEecCC
Q 017884 142 VKLVLLDEADAMTKD-A--QFALRRVIEKYTKNTRFALICNQV------------------NKIIPALQSRCTRFRFAPL 200 (364)
Q Consensus 142 ~~viiiDe~~~l~~~-~--~~~L~~~le~~~~~~~~Il~~~~~------------------~~l~~~l~sr~~~i~~~~~ 200 (364)
+.+++|||+...+.. . ...+..+.+-++....++.++|-. ..++..+..++..+.+-.+
T Consensus 85 pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~sgidVitT~Nlqh~esl~d~v~~itg~~v~e~vpd~~~~~a~~v~lvD~ 164 (228)
T 2r8r_A 85 PSLVLVDELAHTNAPGSRHTKRWQDIQELLAAGIDVYTTVNVQHLESLNDQVRGITGVQVRETLPDWVLQEAFDLVLIDL 164 (228)
T ss_dssp CSEEEESCTTCBCCTTCSSSBHHHHHHHHHHTTCEEEEEEEGGGBGGGHHHHHHHHSCCCCSCBCHHHHHTCSEEEEBCC
T ss_pred CCEEEEeCCCCCCcccchhHHHHHHHHHHHcCCCCEEEEccccccccHHHHHHHHcCCCcCCcCccHHHhhCCeEEEecC
Confidence 679999998765211 0 011112222344455677777521 2344555566766788788
Q ss_pred ChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc-CCCHHHHHH
Q 017884 201 EPVHVTERLKHVIEAEGLDVTEGGLAALVRLC-NGDMRKALN 241 (364)
Q Consensus 201 ~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~-~g~~r~a~~ 241 (364)
+++++.+.+.. -++...+.+-..+..+. .||+..+..
T Consensus 165 ~p~~l~~rl~~----g~vy~~~~~~~a~~~~f~~~nl~~lre 202 (228)
T 2r8r_A 165 PPRELLERLRD----GKVYVPEQARAAIDAFFTQTNLTALRE 202 (228)
T ss_dssp CHHHHHHHHHT----TCCCCTTCCHHHHHHHCCHHHHHHHHH
T ss_pred CHHHHHHHHHC----CCccChhHHHHHHHhhhchhhHHHHHH
Confidence 88887666442 23333334444444444 355555444
No 112
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.75 E-value=1.8e-05 Score=76.69 Aligned_cols=113 Identities=19% Similarity=0.269 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHhcCCCCcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCCCChHHHHHH-------HHHHHhc
Q 017884 59 RDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQ-------IQDFAST 131 (364)
Q Consensus 59 ~~~~~~l~~~~~~~~~~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------i~~~~~~ 131 (364)
+.....+...+. .+.+++.|+||||||+++..++..+...+.. ++... ........+.+. +..+...
T Consensus 192 ~~Q~~Av~~~~~---~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~--Vl~~A-pT~~Aa~~L~e~~~~~a~Tih~ll~~ 265 (574)
T 3e1s_A 192 EEQASVLDQLAG---HRLVVLTGGPGTGKSTTTKAVADLAESLGLE--VGLCA-PTGKAARRLGEVTGRTASTVHRLLGY 265 (574)
T ss_dssp HHHHHHHHHHTT---CSEEEEECCTTSCHHHHHHHHHHHHHHTTCC--EEEEE-SSHHHHHHHHHHHTSCEEEHHHHTTE
T ss_pred HHHHHHHHHHHh---CCEEEEEcCCCCCHHHHHHHHHHHHHhcCCe--EEEec-CcHHHHHHhHhhhcccHHHHHHHHcC
Confidence 444555554443 2458999999999999999999887654432 33222 221111122211 1122211
Q ss_pred Cc--ccc--CCccceEEEEEeCCCCCCHHHHHHHHHHHHHhccCccEEEEeec
Q 017884 132 QS--FSF--GVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQ 180 (364)
Q Consensus 132 ~~--~~~--~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~ 180 (364)
.+ +.. .......+|||||+..+.......|++.+ +..+++|++.+.
T Consensus 266 ~~~~~~~~~~~~~~~dvlIIDEasml~~~~~~~Ll~~~---~~~~~lilvGD~ 315 (574)
T 3e1s_A 266 GPQGFRHNHLEPAPYDLLIVDEVSMMGDALMLSLLAAV---PPGARVLLVGDT 315 (574)
T ss_dssp ETTEESCSSSSCCSCSEEEECCGGGCCHHHHHHHHTTS---CTTCEEEEEECT
T ss_pred CcchhhhhhcccccCCEEEEcCccCCCHHHHHHHHHhC---cCCCEEEEEecc
Confidence 11 000 01114679999999999887666665544 467889999864
No 113
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=97.64 E-value=9e-05 Score=60.88 Aligned_cols=107 Identities=12% Similarity=0.158 Sum_probs=67.0
Q ss_pred CcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCC-CCChH-----------------------------HHHHH
Q 017884 75 PHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASD-DRGID-----------------------------VVRQQ 124 (364)
Q Consensus 75 ~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~-~~~~~-----------------------------~~~~~ 124 (364)
+.+++|+++|.||||+|-.++-...+.+....++.+.-.. ..+.. .....
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~~ 108 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMAV 108 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHHH
Confidence 4589999999999999999998887777666555543221 11110 11111
Q ss_pred HHHHHhcCccccCCccceEEEEEeCC------CCCCHHHHHHHHHHHHHhccCccEEEEeeccccCchhhhccc
Q 017884 125 IQDFASTQSFSFGVKASVKLVLLDEA------DAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRC 192 (364)
Q Consensus 125 i~~~~~~~~~~~~~~~~~~viiiDe~------~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~l~~~l~sr~ 192 (364)
+...... + ....+.+||+||+ +.+.. +.++.++...|....+|++++... +.|...+
T Consensus 109 l~~a~~~----l-~~~~yDlvILDEi~~al~~g~l~~---~ev~~~l~~Rp~~~~vIlTGr~ap---~~l~e~A 171 (196)
T 1g5t_A 109 WQHGKRM----L-ADPLLDMVVLDELTYMVAYDYLPL---EEVISALNARPGHQTVIITGRGCH---RDILDLA 171 (196)
T ss_dssp HHHHHHH----T-TCTTCSEEEEETHHHHHHTTSSCH---HHHHHHHHTSCTTCEEEEECSSCC---HHHHHHC
T ss_pred HHHHHHH----H-hcCCCCEEEEeCCCccccCCCCCH---HHHHHHHHhCcCCCEEEEECCCCc---HHHHHhC
Confidence 1111111 1 1125889999998 44443 457888888888999999997653 3444444
No 114
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=97.63 E-value=0.00013 Score=60.88 Aligned_cols=100 Identities=12% Similarity=0.131 Sum_probs=50.7
Q ss_pred EEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCCCChHHHHHHHHHHHhcCcc-----ccCC-ccceEEEEEeCC
Q 017884 77 LLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSF-----SFGV-KASVKLVLLDEA 150 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-----~~~~-~~~~~viiiDe~ 150 (364)
.+++|+.|+|||+.+...+......+....++...-....+...+...+.......+. .+.. .....+|+|||+
T Consensus 31 ~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~~~d~R~ge~~i~s~~g~~~~a~~~~~~~~~~~~~~~~~dvViIDEa 110 (214)
T 2j9r_A 31 EVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPCIDNRYSEEDVVSHNGLKVKAVPVSASKDIFKHITEEMDVIAIDEV 110 (214)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEECC-----------------CCEEECSSGGGGGGGCCSSCCEEEECCG
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCCcchHHHHHhhcCCeeEEeecCCHHHHHHHHhcCCCEEEEECc
Confidence 5899999999999988888877655544433332211111222222222111100000 0000 013679999999
Q ss_pred CCCCHHHHHHHHHHHHHhccCccEEEEee
Q 017884 151 DAMTKDAQFALRRVIEKYTKNTRFALICN 179 (364)
Q Consensus 151 ~~l~~~~~~~L~~~le~~~~~~~~Il~~~ 179 (364)
+.++++..+.+..+.+ .+..+|+++-
T Consensus 111 QF~~~~~V~~l~~l~~---~~~~Vi~~Gl 136 (214)
T 2j9r_A 111 QFFDGDIVEVVQVLAN---RGYRVIVAGL 136 (214)
T ss_dssp GGSCTTHHHHHHHHHH---TTCEEEEEEC
T ss_pred ccCCHHHHHHHHHHhh---CCCEEEEEec
Confidence 9998776654444322 3566777763
No 115
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.60 E-value=0.00021 Score=77.46 Aligned_cols=41 Identities=22% Similarity=0.220 Sum_probs=29.7
Q ss_pred HHHHHh-cC--CCCcEEEeCCCCccHHHHHHHHHHHHcCCCCCC
Q 017884 65 IDRLTS-EN--RLPHLLLYGPPGTGKTSTILAVARKLYGAQYHN 105 (364)
Q Consensus 65 l~~~~~-~~--~~~~lll~G~~G~GKt~la~~l~~~l~~~~~~~ 105 (364)
|...+. .+ +...++|+||||+|||++|.+++.+....+...
T Consensus 1415 LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v 1458 (2050)
T 3cmu_A 1415 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTC 1458 (2050)
T ss_dssp HHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCE
T ss_pred HHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcE
Confidence 555555 33 223389999999999999999998876554433
No 116
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.60 E-value=0.00097 Score=55.89 Aligned_cols=33 Identities=24% Similarity=0.383 Sum_probs=24.7
Q ss_pred EEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCC
Q 017884 77 LLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASD 114 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~ 114 (364)
++|+||+|+|||+++..++. . ....++.++...
T Consensus 23 ~~i~G~~GsGKTtl~~~l~~-~----~~~~v~~i~~~~ 55 (220)
T 2cvh_A 23 TQVYGPYASGKTTLALQTGL-L----SGKKVAYVDTEG 55 (220)
T ss_dssp EEEECSTTSSHHHHHHHHHH-H----HCSEEEEEESSC
T ss_pred EEEECCCCCCHHHHHHHHHH-H----cCCcEEEEECCC
Confidence 79999999999999999988 2 123445555443
No 117
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=97.52 E-value=0.00062 Score=57.29 Aligned_cols=97 Identities=11% Similarity=0.190 Sum_probs=53.4
Q ss_pred EEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCCCChHHHHHHHHHHHhcCccc-----cCCccceEEEEEeCCC
Q 017884 77 LLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFS-----FGVKASVKLVLLDEAD 151 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-----~~~~~~~~viiiDe~~ 151 (364)
.+++|+.|+|||+.+...+......+....++...-....+ ..+...+.......... +.......+|+|||++
T Consensus 22 ~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~kp~~D~Ryg-~~i~sr~G~~~~a~~i~~~~di~~~~~~~dvViIDEaQ 100 (234)
T 2orv_A 22 QVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYS-SSFCTHDRNTMEALPACLLRDVAQEALGVAVIGIDEGQ 100 (234)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEETTCCCC------------CEEEEESSGGGGHHHHTTCSEEEESSGG
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeecCCccch-HHHHhhcCCeeEEEecCCHHHHHHHhccCCEEEEEchh
Confidence 59999999999987777776666555555444433333223 33333221111100000 0000146799999999
Q ss_pred CCCHHHHHHHHHHHHHhccCccEEEEe
Q 017884 152 AMTKDAQFALRRVIEKYTKNTRFALIC 178 (364)
Q Consensus 152 ~l~~~~~~~L~~~le~~~~~~~~Il~~ 178 (364)
.+.+ ...+.+.+.+ .+..+|+++
T Consensus 101 F~~~--v~el~~~l~~--~gi~VI~~G 123 (234)
T 2orv_A 101 FFPD--IVEFCEAMAN--AGKTVIVAA 123 (234)
T ss_dssp GCTT--HHHHHHHHHH--TTCEEEEEC
T ss_pred hhhh--HHHHHHHHHh--CCCEEEEEe
Confidence 9975 6666777776 356677776
No 118
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=97.51 E-value=0.0029 Score=60.56 Aligned_cols=69 Identities=19% Similarity=0.248 Sum_probs=48.8
Q ss_pred eEEEEEeCCCCCC----HHHHHHHHHHHHHhcc-CccEEEEeeccc--cCchhhhccc-eEEEecCCChHHHHHHHH
Q 017884 142 VKLVLLDEADAMT----KDAQFALRRVIEKYTK-NTRFALICNQVN--KIIPALQSRC-TRFRFAPLEPVHVTERLK 210 (364)
Q Consensus 142 ~~viiiDe~~~l~----~~~~~~L~~~le~~~~-~~~~Il~~~~~~--~l~~~l~sr~-~~i~~~~~~~~~~~~~l~ 210 (364)
+-+|+|||++.+. +.....|.++...... .+.+|+++..+. .+...+++.+ ..+.|...+..+...++.
T Consensus 344 ~ivvVIDE~~~L~~~~~~~~~~~L~~Iar~GRa~GIhLIlaTQRPs~d~I~~~Iran~~~RI~lrv~s~~Dsr~ILd 420 (574)
T 2iut_A 344 TIVVVVDEFADMMMIVGKKVEELIARIAQKARAAGIHLILATQRPSVDVITGLIKANIPTRIAFQVSSKIDSRTILD 420 (574)
T ss_dssp EEEEEESCCTTHHHHTCHHHHHHHHHHHHHCTTTTEEEEEEESCCCTTTSCHHHHHTCCEEEEECCSCHHHHHHHHS
T ss_pred cEEEEEeCHHHHhhhhhHHHHHHHHHHHHHHhhCCeEEEEEecCcccccccHHHHhhhccEEEEEcCCHHHHHHhcC
Confidence 5799999999874 3445566666665443 455777776665 6777788877 668888888877776663
No 119
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=97.48 E-value=8.2e-05 Score=61.33 Aligned_cols=93 Identities=13% Similarity=0.219 Sum_probs=50.2
Q ss_pred EEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCCCChHHHHHHH------------HHHHhcCccccCCccceEE
Q 017884 77 LLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQI------------QDFASTQSFSFGVKASVKL 144 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i------------~~~~~~~~~~~~~~~~~~v 144 (364)
.+++||.|+|||+.+..+++.....+....++........+...+...+ .+.... ... ...+
T Consensus 11 ~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~~d~r~~~~~i~s~~g~~~~a~~~~~~~~i~~~----~~~--~~dv 84 (191)
T 1xx6_A 11 EVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEIDNRYSKEDVVSHMGEKEQAVAIKNSREILKY----FEE--DTEV 84 (191)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC-------CEEECTTSCEEECEEESSSTHHHHH----CCT--TCSE
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCccchHHHHHhhcCCceeeEeeCCHHHHHHH----Hhc--cCCE
Confidence 5999999999999998888887554443333321111100000000000 001100 011 3679
Q ss_pred EEEeCCCCCCHHHHHHHHHHHHHhccCccEEEEe
Q 017884 145 VLLDEADAMTKDAQFALRRVIEKYTKNTRFALIC 178 (364)
Q Consensus 145 iiiDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~ 178 (364)
|+|||++.++++..+.+..+.+ .+..+|+++
T Consensus 85 ViIDEaqfl~~~~v~~l~~l~~---~~~~Vi~~G 115 (191)
T 1xx6_A 85 IAIDEVQFFDDEIVEIVNKIAE---SGRRVICAG 115 (191)
T ss_dssp EEECSGGGSCTHHHHHHHHHHH---TTCEEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHh---CCCEEEEEe
Confidence 9999999998776555544432 256677766
No 120
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.42 E-value=0.003 Score=52.84 Aligned_cols=22 Identities=36% Similarity=0.573 Sum_probs=20.7
Q ss_pred EEEeCCCCccHHHHHHHHHHHH
Q 017884 77 LLLYGPPGTGKTSTILAVARKL 98 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l 98 (364)
++|.|+||+||||+++.+++.+
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 3 LVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999999886
No 121
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.42 E-value=0.0024 Score=56.44 Aligned_cols=51 Identities=16% Similarity=0.092 Sum_probs=33.0
Q ss_pred HHHHHHh----cCCCCc-EEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCC
Q 017884 64 TIDRLTS----ENRLPH-LLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASD 114 (364)
Q Consensus 64 ~l~~~~~----~~~~~~-lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~ 114 (364)
.|...+. .|-.+. ++++||||+|||+++..++......+....++++++..
T Consensus 13 ~LD~~LGg~~~GGl~~GiteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~ 68 (333)
T 3io5_A 13 MMNIALSGEITGGMQSGLLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEF 68 (333)
T ss_dssp HHHHHHHSSTTCCBCSEEEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSC
T ss_pred HHHHHhCCCCCCCCcCCeEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccc
Confidence 4455566 443333 69999999999999988887764322233455555443
No 122
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=97.42 E-value=0.00019 Score=70.20 Aligned_cols=102 Identities=16% Similarity=0.204 Sum_probs=56.3
Q ss_pred CcEEEeCCCCccHHHHHHHHHHHHcCC--CCCCcEEEEeCCCCCChHHHHHHHHHHHhcC---------------c----
Q 017884 75 PHLLLYGPPGTGKTSTILAVARKLYGA--QYHNMILELNASDDRGIDVVRQQIQDFASTQ---------------S---- 133 (364)
Q Consensus 75 ~~lll~G~~G~GKt~la~~l~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---------------~---- 133 (364)
+.++++|+||||||+++..+...+... .....++-. ++.......+.+.+....... .
T Consensus 165 ~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vll~-APTg~AA~~L~e~~~~~~~~l~l~~~~~~~~~~~~~Tih~l 243 (608)
T 1w36_D 165 RISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLA-APTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRL 243 (608)
T ss_dssp SEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEE-BSSHHHHHHHHHHHTHHHHHSSCCSCCCCSCSCCCBTTTSC
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCeEEEE-eCChhHHHHHHHHHHHHHhcCCCCHHHHhccchhhhhhHhh
Confidence 458999999999999999888776421 122233322 222111222222222111000 0
Q ss_pred ---------cccC--CccceEEEEEeCCCCCCHHHHHHHHHHHHHhccCccEEEEeec
Q 017884 134 ---------FSFG--VKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQ 180 (364)
Q Consensus 134 ---------~~~~--~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~ 180 (364)
+... ......++||||++.+.......|+ ...+..+++|++++.
T Consensus 244 l~~~~~~~~~~~~~~~~l~~d~lIIDEAsml~~~~~~~Ll---~~l~~~~~liLvGD~ 298 (608)
T 1w36_D 244 LGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLI---DALPDHARVIFLGDR 298 (608)
T ss_dssp C-----------CTTSCCSCSEEEECSGGGCBHHHHHHHH---HTCCTTCEEEEEECT
T ss_pred hccCCCchHHHhccCCCCCCCEEEEechhhCCHHHHHHHH---HhCCCCCEEEEEcch
Confidence 0000 0013569999999988765545554 444667889999864
No 123
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=97.37 E-value=0.0014 Score=56.02 Aligned_cols=38 Identities=21% Similarity=0.293 Sum_probs=27.5
Q ss_pred cHHHHHHHHHHHhcCCCCcEEEeCCCCccHHHHHHHHHHHH
Q 017884 58 HRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKL 98 (364)
Q Consensus 58 ~~~~~~~l~~~~~~~~~~~lll~G~~G~GKt~la~~l~~~l 98 (364)
++.....+..++.. ..++++||+|+|||.++..++..+
T Consensus 95 ~~~Q~~ai~~~~~~---~~~ll~~~tG~GKT~~a~~~~~~~ 132 (237)
T 2fz4_A 95 RDYQEKALERWLVD---KRGCIVLPTGSGKTHVAMAAINEL 132 (237)
T ss_dssp CHHHHHHHHHHTTT---SEEEEEESSSTTHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHhC---CCEEEEeCCCCCHHHHHHHHHHHc
Confidence 34444455555543 349999999999999998888775
No 124
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.37 E-value=0.00079 Score=61.01 Aligned_cols=25 Identities=32% Similarity=0.571 Sum_probs=21.8
Q ss_pred EEEeCCCCccHHHHHHHHHHHHcCC
Q 017884 77 LLLYGPPGTGKTSTILAVARKLYGA 101 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l~~~ 101 (364)
++|+||||+|||+++..++..+...
T Consensus 64 v~I~G~pGsGKTtLal~la~~~~~~ 88 (349)
T 2zr9_A 64 IEIYGPESSGKTTVALHAVANAQAA 88 (349)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhC
Confidence 7999999999999999998776543
No 125
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.33 E-value=0.002 Score=58.66 Aligned_cols=25 Identities=36% Similarity=0.535 Sum_probs=21.7
Q ss_pred EEEeCCCCccHHHHHHHHHHHHcCC
Q 017884 77 LLLYGPPGTGKTSTILAVARKLYGA 101 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l~~~ 101 (364)
++|+|+||+|||+++..++..+...
T Consensus 77 i~I~G~pGsGKTtlal~la~~~~~~ 101 (366)
T 1xp8_A 77 TEIYGPESGGKTTLALAIVAQAQKA 101 (366)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred EEEEcCCCCChHHHHHHHHHHHHHC
Confidence 7999999999999999998876433
No 126
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.32 E-value=0.0023 Score=54.46 Aligned_cols=38 Identities=16% Similarity=0.097 Sum_probs=27.1
Q ss_pred EEEeCCCCccHHHHHHHHHHHHcCCC----CCCcEEEEeCCC
Q 017884 77 LLLYGPPGTGKTSTILAVARKLYGAQ----YHNMILELNASD 114 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l~~~~----~~~~~~~~~~~~ 114 (364)
+.|+||+|+|||+++..++....... ....++.++...
T Consensus 27 ~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 27 TEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred EEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence 79999999999999999998642211 133456665544
No 127
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.29 E-value=0.00067 Score=54.94 Aligned_cols=21 Identities=33% Similarity=0.512 Sum_probs=19.6
Q ss_pred EEEeCCCCccHHHHHHHHHHH
Q 017884 77 LLLYGPPGTGKTSTILAVARK 97 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~ 97 (364)
++|.|+||+||||+++.+++.
T Consensus 5 I~i~G~~GsGKST~a~~L~~~ 25 (181)
T 1ly1_A 5 ILTIGCPGSGKSTWAREFIAK 25 (181)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEecCCCCCHHHHHHHHHhh
Confidence 799999999999999999983
No 128
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.28 E-value=0.0036 Score=58.16 Aligned_cols=29 Identities=38% Similarity=0.575 Sum_probs=24.9
Q ss_pred EEEeCCCCccHHHHHHHHHHHHcCCCCCC
Q 017884 77 LLLYGPPGTGKTSTILAVARKLYGAQYHN 105 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l~~~~~~~ 105 (364)
+++.|++|+||||++..++..+...+...
T Consensus 103 IlivG~~G~GKTTt~~kLA~~l~~~G~kV 131 (443)
T 3dm5_A 103 LLMVGIQGSGKTTTVAKLARYFQKRGYKV 131 (443)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHTTTCCE
T ss_pred EEEECcCCCCHHHHHHHHHHHHHHCCCeE
Confidence 79999999999999999999887655443
No 129
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.27 E-value=0.006 Score=52.15 Aligned_cols=23 Identities=26% Similarity=0.615 Sum_probs=21.4
Q ss_pred cEEEeCCCCccHHHHHHHHHHHH
Q 017884 76 HLLLYGPPGTGKTSTILAVARKL 98 (364)
Q Consensus 76 ~lll~G~~G~GKt~la~~l~~~l 98 (364)
.++|.||||+||||+++.+++.+
T Consensus 31 ~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 31 RYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 38999999999999999999886
No 130
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.27 E-value=0.0012 Score=59.86 Aligned_cols=34 Identities=26% Similarity=0.355 Sum_probs=25.8
Q ss_pred EEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeC
Q 017884 77 LLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNA 112 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~ 112 (364)
++|+|+||+|||+++..++..+...+. .++.++.
T Consensus 66 i~I~G~pGsGKTtLal~la~~~~~~g~--~vlyid~ 99 (356)
T 1u94_A 66 VEIYGPESSGKTTLTLQVIAAAQREGK--TCAFIDA 99 (356)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTTC--CEEEEES
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCC--eEEEEeC
Confidence 799999999999999999987654332 3444444
No 131
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.27 E-value=0.0023 Score=57.96 Aligned_cols=48 Identities=19% Similarity=0.175 Sum_probs=31.5
Q ss_pred HHHHHHh-cCCCCc--EEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCC
Q 017884 64 TIDRLTS-ENRLPH--LLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNAS 113 (364)
Q Consensus 64 ~l~~~~~-~~~~~~--lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~ 113 (364)
.|...+. .|-.+. ++|+||||+|||+++..++..+...+. .+++++..
T Consensus 48 ~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg--~VlyId~E 98 (356)
T 3hr8_A 48 AIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGG--VAAFIDAE 98 (356)
T ss_dssp HHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTC--CEEEEESS
T ss_pred HHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCC--eEEEEecc
Confidence 4455555 343223 699999999999999999988653322 33444443
No 132
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=97.26 E-value=0.0004 Score=56.89 Aligned_cols=95 Identities=15% Similarity=0.140 Sum_probs=50.3
Q ss_pred EEEeCCCCccHH-HHHHHHHHHHcCCCCCCcEEEEeCCCC-CChHHHHHHHHHHHhcCccc-----cCCccceEEEEEeC
Q 017884 77 LLLYGPPGTGKT-STILAVARKLYGAQYHNMILELNASDD-RGIDVVRQQIQDFASTQSFS-----FGVKASVKLVLLDE 149 (364)
Q Consensus 77 lll~G~~G~GKt-~la~~l~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~-----~~~~~~~~viiiDe 149 (364)
+++|||.|+||| .+++++.+.... + ..++.+.+... .....+...+.......+.. +.......+|+|||
T Consensus 23 ~fiyG~MgsGKTt~Ll~~i~n~~~~-~--~kvl~~kp~~D~R~~~~i~S~~g~~~~A~~~~~~~d~~~~~~~~DvIlIDE 99 (195)
T 1w4r_A 23 QVILGPMFSGKSTELMRRVRRFQIA-Q--YKCLVIKYAKDTRYSSSFCTHDRNTMEALPACLLRDVAQEALGVAVIGIDE 99 (195)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHT-T--CCEEEEEETTCCCGGGSCCHHHHHHSEEEEESSGGGGHHHHHTCSEEEESS
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHc-C--CeEEEEccccCccchhhhhhccCCcccceecCCHHHHHHhccCCCEEEEEc
Confidence 699999999999 788888877543 2 34444443211 11111222222111110000 00011356999999
Q ss_pred CCCCCHHHHHHHHHHHHHhccCccEEEEe
Q 017884 150 ADAMTKDAQFALRRVIEKYTKNTRFALIC 178 (364)
Q Consensus 150 ~~~l~~~~~~~L~~~le~~~~~~~~Il~~ 178 (364)
++.+ ++ +..+++.+.+ .+..+|+++
T Consensus 100 aQFf-k~-~ve~~~~L~~--~gk~VI~~G 124 (195)
T 1w4r_A 100 GQFF-PD-IVEFCEAMAN--AGKTVIVAA 124 (195)
T ss_dssp GGGC-TT-HHHHHHHHHH--TTCEEEEEE
T ss_pred hhhh-HH-HHHHHHHHHH--CCCeEEEEe
Confidence 9999 55 4455555543 244566665
No 133
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.26 E-value=0.0027 Score=57.41 Aligned_cols=50 Identities=16% Similarity=0.099 Sum_probs=32.6
Q ss_pred HHHHHhcCCCCc--EEEeCCCCccHHHHHHHHHHHHcCCC----CCCcEEEEeCCC
Q 017884 65 IDRLTSENRLPH--LLLYGPPGTGKTSTILAVARKLYGAQ----YHNMILELNASD 114 (364)
Q Consensus 65 l~~~~~~~~~~~--lll~G~~G~GKt~la~~l~~~l~~~~----~~~~~~~~~~~~ 114 (364)
|...+..+-.+. ++|+||||+|||+++..++.....+. ....+++++...
T Consensus 111 LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~ 166 (343)
T 1v5w_A 111 FDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN 166 (343)
T ss_dssp HHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 444444443333 69999999999999999998743211 234566666554
No 134
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.26 E-value=0.0011 Score=56.08 Aligned_cols=23 Identities=43% Similarity=0.489 Sum_probs=20.7
Q ss_pred EEEeCCCCccHHHHHHHHHHHHc
Q 017884 77 LLLYGPPGTGKTSTILAVARKLY 99 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l~ 99 (364)
++|+||+|+|||++++.++..+.
T Consensus 26 ~~i~G~~GsGKTtl~~~l~~~~~ 48 (235)
T 2w0m_A 26 IALTGEPGTGKTIFSLHFIAKGL 48 (235)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH
Confidence 79999999999999999997653
No 135
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=97.25 E-value=0.001 Score=57.72 Aligned_cols=24 Identities=33% Similarity=0.523 Sum_probs=21.8
Q ss_pred cEEEeCCCCccHHHHHHHHHHHHc
Q 017884 76 HLLLYGPPGTGKTSTILAVARKLY 99 (364)
Q Consensus 76 ~lll~G~~G~GKt~la~~l~~~l~ 99 (364)
.++|.|+||+||||+++.++..+.
T Consensus 6 lIvl~G~pGSGKSTla~~La~~L~ 29 (260)
T 3a4m_A 6 LIILTGLPGVGKSTFSKNLAKILS 29 (260)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 479999999999999999999864
No 136
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.25 E-value=0.0035 Score=52.43 Aligned_cols=22 Identities=32% Similarity=0.603 Sum_probs=20.8
Q ss_pred EEEeCCCCccHHHHHHHHHHHH
Q 017884 77 LLLYGPPGTGKTSTILAVARKL 98 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l 98 (364)
++|.|++|+||||+++.+++.+
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6899999999999999999987
No 137
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.20 E-value=0.0015 Score=53.56 Aligned_cols=70 Identities=14% Similarity=0.173 Sum_probs=43.1
Q ss_pred ceEEEEEeCCCCC---CHHHHHHHHHHHHHhccCccEEE-Ee--ecc-ccCchhhhcc--ceEEEecCCChHHHHHHHHH
Q 017884 141 SVKLVLLDEADAM---TKDAQFALRRVIEKYTKNTRFAL-IC--NQV-NKIIPALQSR--CTRFRFAPLEPVHVTERLKH 211 (364)
Q Consensus 141 ~~~viiiDe~~~l---~~~~~~~L~~~le~~~~~~~~Il-~~--~~~-~~l~~~l~sr--~~~i~~~~~~~~~~~~~l~~ 211 (364)
++.++++||+..+ .....+.+.++++.+ .+.++. ++ ... ..+...+..+ +.++.+.+-+.+.+...+..
T Consensus 105 ~~dvlilDE~g~~~~~~~~~~~~l~~~l~~~--~~~ilgti~vsh~~~~~~vd~i~~~~~~~i~~~~~~nr~~~~~~i~~ 182 (189)
T 2i3b_A 105 GQRVCVIDEIGKMELFSQLFIQAVRQTLSTP--GTIILGTIPVPKGKPLALVEEIRNRKDVKVFNVTKENRNHLLPDIVT 182 (189)
T ss_dssp CCCCEEECCCSTTTTTCSHHHHHHHHHHHCS--SCCEEEECCCCCSSCCTTHHHHHTTCCSEEEECCSSSGGGHHHHHHH
T ss_pred CCCEEEEeCCCccccccHHHHHHHHHHHhCC--CcEEEEEeecCCCCchHHHHHHeecCCcEEEEeChHhHHHHHHHHHH
Confidence 5789999997666 345677777777753 233321 22 222 2445566554 58888887777766666544
Q ss_pred H
Q 017884 212 V 212 (364)
Q Consensus 212 ~ 212 (364)
.
T Consensus 183 ~ 183 (189)
T 2i3b_A 183 C 183 (189)
T ss_dssp H
T ss_pred H
Confidence 3
No 138
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.16 E-value=0.0011 Score=53.19 Aligned_cols=22 Identities=27% Similarity=0.520 Sum_probs=19.5
Q ss_pred cEEEeCCCCccHHHHHHHHHHHH
Q 017884 76 HLLLYGPPGTGKTSTILAVARKL 98 (364)
Q Consensus 76 ~lll~G~~G~GKt~la~~l~~~l 98 (364)
.++|.|++|+||||+++.+ +.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~ 24 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KER 24 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHT
T ss_pred EEEEECCCCCCHHHHHHHH-HHC
Confidence 4789999999999999999 654
No 139
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=97.07 E-value=0.0012 Score=61.38 Aligned_cols=75 Identities=15% Similarity=0.113 Sum_probs=42.5
Q ss_pred EEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCCCChHHHHHHHHHHHhcCccccCCccceEEEEEeCCCCCCHH
Q 017884 77 LLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKD 156 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~ 156 (364)
++++|+||+||||+++.+++.+ .. ..++.........+...+..... .+..+|+|... ....
T Consensus 261 Iil~G~pGSGKSTla~~L~~~~-----~~--~~i~~D~~~~~~~~~~~~~~~l~----------~g~~vIiD~~~-~~~~ 322 (416)
T 3zvl_A 261 VVAVGFPGAGKSTFIQEHLVSA-----GY--VHVNRDTLGSWQRCVSSCQAALR----------QGKRVVIDNTN-PDVP 322 (416)
T ss_dssp EEEESCTTSSHHHHHHHHTGGG-----TC--EECCGGGSCSHHHHHHHHHHHHH----------TTCCEEEESCC-CSHH
T ss_pred EEEECCCCCCHHHHHHHHHHhc-----Cc--EEEccchHHHHHHHHHHHHHHHh----------cCCcEEEeCCC-CCHH
Confidence 7999999999999999998875 22 23333222222233333332222 13356677553 3445
Q ss_pred HHHHHHHHHHHhc
Q 017884 157 AQFALRRVIEKYT 169 (364)
Q Consensus 157 ~~~~L~~~le~~~ 169 (364)
....+...+....
T Consensus 323 ~r~~~~~~~~~~~ 335 (416)
T 3zvl_A 323 SRARYIQCAKDAG 335 (416)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcC
Confidence 5556666655543
No 140
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.07 E-value=0.0035 Score=53.39 Aligned_cols=23 Identities=39% Similarity=0.407 Sum_probs=20.3
Q ss_pred EEEeCCCCccHHHHHHHHHHHHc
Q 017884 77 LLLYGPPGTGKTSTILAVARKLY 99 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l~ 99 (364)
++|+||||+|||+++..++..+.
T Consensus 26 ~~i~G~~GsGKTtl~~~~~~~~~ 48 (247)
T 2dr3_A 26 VLLSGGPGTGKTIFSQQFLWNGL 48 (247)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 79999999999999988877654
No 141
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=97.06 E-value=0.0015 Score=58.19 Aligned_cols=23 Identities=39% Similarity=0.676 Sum_probs=21.5
Q ss_pred cEEEeCCCCccHHHHHHHHHHHH
Q 017884 76 HLLLYGPPGTGKTSTILAVARKL 98 (364)
Q Consensus 76 ~lll~G~~G~GKt~la~~l~~~l 98 (364)
.++|.||+|+|||+++..+++.+
T Consensus 7 ~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 37999999999999999999986
No 142
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.04 E-value=0.0055 Score=55.54 Aligned_cols=46 Identities=24% Similarity=0.463 Sum_probs=31.4
Q ss_pred CCCCcchhccHHHHHHHHHHHhcCCCCcEEEeCCCCccHHHHHHHHHHHHc
Q 017884 49 PQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLY 99 (364)
Q Consensus 49 p~~~~~~vg~~~~~~~l~~~~~~~~~~~lll~G~~G~GKt~la~~l~~~l~ 99 (364)
+.+++++...+ . +........ ..+++.||+|+||||++++++..+.
T Consensus 103 ~~~l~~lg~~~-~---l~~l~~~~~-g~i~I~GptGSGKTTlL~~l~g~~~ 148 (356)
T 3jvv_A 103 VLTMEELGMGE-V---FKRVSDVPR-GLVLVTGPTGSGKSTTLAAMLDYLN 148 (356)
T ss_dssp CCCTTTTTCCH-H---HHHHHHCSS-EEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred CCCHHHcCChH-H---HHHHHhCCC-CEEEEECCCCCCHHHHHHHHHhccc
Confidence 34566665433 3 333333221 2489999999999999999998874
No 143
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.03 E-value=0.0034 Score=52.43 Aligned_cols=106 Identities=15% Similarity=0.253 Sum_probs=57.6
Q ss_pred CCCCcEEEeCCCCccHHHHHHHHHHHHcCCC---CCC---------cEEEEeCCCCCChHHHHHHHHHHHhcCccccCCc
Q 017884 72 NRLPHLLLYGPPGTGKTSTILAVARKLYGAQ---YHN---------MILELNASDDRGIDVVRQQIQDFASTQSFSFGVK 139 (364)
Q Consensus 72 ~~~~~lll~G~~G~GKt~la~~l~~~l~~~~---~~~---------~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 139 (364)
...+++++.|++|+|||+++.++........ ... .+.-++.+ |.+..+.....+..... ..
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~---G~~~~~~~~~~~~~~~~----~~ 82 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADYDGSGVTLVDFP---GHVKLRYKLSDYLKTRA----KF 82 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTGGGSSCEEEECC---CCGGGTHHHHHHHHHHG----GG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEeeCceEEEEECC---CcHHHHHHHHHHHHhcc----cc
Confidence 3445699999999999999999988653221 111 11112222 22333333333332100 00
Q ss_pred cceEEEEEeCC-CC-CCHHHHHHHHHHHHH----hccCccEEEEeeccccC
Q 017884 140 ASVKLVLLDEA-DA-MTKDAQFALRRVIEK----YTKNTRFALICNQVNKI 184 (364)
Q Consensus 140 ~~~~viiiDe~-~~-l~~~~~~~L~~~le~----~~~~~~~Il~~~~~~~l 184 (364)
...-++++|-. +. -.......+..++.. .+.+..+++++|..+..
T Consensus 83 ~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 133 (218)
T 1nrj_B 83 VKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELF 133 (218)
T ss_dssp EEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTST
T ss_pred CCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhc
Confidence 13557778866 21 123445556666654 23567788888877643
No 144
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=97.00 E-value=0.0014 Score=54.64 Aligned_cols=37 Identities=16% Similarity=0.293 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHhcCCCCcEEEeCCCCccHHHHHHHHHHHH
Q 017884 59 RDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKL 98 (364)
Q Consensus 59 ~~~~~~l~~~~~~~~~~~lll~G~~G~GKt~la~~l~~~l 98 (364)
+.....+..++.+ .++++.||+|+|||.++...+...
T Consensus 36 ~~Q~~~i~~~~~~---~~~li~~~tGsGKT~~~~~~~~~~ 72 (216)
T 3b6e_A 36 PYQMEVAQPALEG---KNIIICLPTGSGKTRVAVYIAKDH 72 (216)
T ss_dssp HHHHHHHHHHHTT---CCEEEECSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC---CCEEEEcCCCCCHHHHHHHHHHHH
Confidence 3444444444432 469999999999999887776654
No 145
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.99 E-value=0.0045 Score=57.48 Aligned_cols=33 Identities=27% Similarity=0.340 Sum_probs=26.0
Q ss_pred EEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEE
Q 017884 77 LLLYGPPGTGKTSTILAVARKLYGAQYHNMILE 109 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~ 109 (364)
+++.|++|+||||++..++..+...+....++.
T Consensus 100 I~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~ 132 (433)
T 3kl4_A 100 IMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVA 132 (433)
T ss_dssp EEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 699999999999999999998865554433333
No 146
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.96 E-value=0.0012 Score=53.31 Aligned_cols=17 Identities=29% Similarity=0.583 Sum_probs=15.9
Q ss_pred EEEeCCCCccHHHHHHH
Q 017884 77 LLLYGPPGTGKTSTILA 93 (364)
Q Consensus 77 lll~G~~G~GKt~la~~ 93 (364)
+.|.||+|+||||+++.
T Consensus 12 ~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 12 VVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp EEEECCTTSCHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 79999999999999993
No 147
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.94 E-value=0.0082 Score=54.31 Aligned_cols=22 Identities=27% Similarity=0.378 Sum_probs=20.7
Q ss_pred EEEeCCCCccHHHHHHHHHHHH
Q 017884 77 LLLYGPPGTGKTSTILAVARKL 98 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l 98 (364)
+.|+||+|+|||++++.++..+
T Consensus 134 ~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 134 TEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp EEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6999999999999999999876
No 148
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=96.92 E-value=0.004 Score=55.10 Aligned_cols=51 Identities=18% Similarity=0.295 Sum_probs=32.6
Q ss_pred CCCCcchhccHHHHHHHHH---------------HHhcCCCCcEEEeCCCCccHHHHHH-HHHHHHc
Q 017884 49 PQSLADVAAHRDIVDTIDR---------------LTSENRLPHLLLYGPPGTGKTSTIL-AVARKLY 99 (364)
Q Consensus 49 p~~~~~~vg~~~~~~~l~~---------------~~~~~~~~~lll~G~~G~GKt~la~-~l~~~l~ 99 (364)
..+|+++--.+.++..|.. .+..+...++++++|+|+|||.... .+...+.
T Consensus 91 ~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~ 157 (300)
T 3fmo_B 91 VKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVE 157 (300)
T ss_dssp CCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred cCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhh
Confidence 3578888767776665543 1223323469999999999997643 4444443
No 149
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.92 E-value=0.0015 Score=70.18 Aligned_cols=25 Identities=32% Similarity=0.515 Sum_probs=21.8
Q ss_pred EEEeCCCCccHHHHHHHHHHHHcCC
Q 017884 77 LLLYGPPGTGKTSTILAVARKLYGA 101 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l~~~ 101 (364)
+++|||||||||++|.+++.+-...
T Consensus 1085 ~l~~G~~g~GKT~la~~~~~~~~~~ 1109 (1706)
T 3cmw_A 1085 VEIYGPESSGKTTLTLQVIAAAQRE 1109 (1706)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred EEEEcCCCCChHHHHHHHHHHhhhc
Confidence 8999999999999999999875433
No 150
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=96.92 E-value=0.00079 Score=55.98 Aligned_cols=35 Identities=11% Similarity=0.216 Sum_probs=25.4
Q ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHHHhccCccEEEEe
Q 017884 141 SVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALIC 178 (364)
Q Consensus 141 ~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~ 178 (364)
+..+|+|||++.++++..+.+..+.+ .+..+|+.+
T Consensus 101 ~~dvV~IDEaQFf~~~~v~~l~~la~---~gi~Vi~~G 135 (219)
T 3e2i_A 101 NVDVIGIDEVQFFDDEIVSIVEKLSA---DGHRVIVAG 135 (219)
T ss_dssp TCSEEEECCGGGSCTHHHHHHHHHHH---TTCEEEEEE
T ss_pred CCCEEEEechhcCCHHHHHHHHHHHH---CCCEEEEee
Confidence 46799999999999887777776653 244555554
No 151
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.91 E-value=0.00068 Score=55.30 Aligned_cols=24 Identities=33% Similarity=0.386 Sum_probs=22.4
Q ss_pred CcEEEeCCCCccHHHHHHHHHHHH
Q 017884 75 PHLLLYGPPGTGKTSTILAVARKL 98 (364)
Q Consensus 75 ~~lll~G~~G~GKt~la~~l~~~l 98 (364)
+.++|.|++|+||||+++.+++.+
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 458999999999999999999997
No 152
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.89 E-value=0.0082 Score=55.28 Aligned_cols=38 Identities=18% Similarity=0.102 Sum_probs=26.6
Q ss_pred EEEeCCCCccHHHHHHHHHHHHcCCC----CCCcEEEEeCCC
Q 017884 77 LLLYGPPGTGKTSTILAVARKLYGAQ----YHNMILELNASD 114 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l~~~~----~~~~~~~~~~~~ 114 (364)
+.|+||+|+|||+++..++-....+. ....+++++...
T Consensus 181 ~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~ 222 (400)
T 3lda_A 181 TELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEG 222 (400)
T ss_dssp EEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred EEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCC
Confidence 79999999999999998875543211 233466666554
No 153
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=96.86 E-value=0.012 Score=55.80 Aligned_cols=69 Identities=17% Similarity=0.223 Sum_probs=44.9
Q ss_pred eEEEEEeCCCCCCHHH----HHHHHHHHHHhc-cCccEEEEeeccc--cCchhhhccc-eEEEecCCChHHHHHHHH
Q 017884 142 VKLVLLDEADAMTKDA----QFALRRVIEKYT-KNTRFALICNQVN--KIIPALQSRC-TRFRFAPLEPVHVTERLK 210 (364)
Q Consensus 142 ~~viiiDe~~~l~~~~----~~~L~~~le~~~-~~~~~Il~~~~~~--~l~~~l~sr~-~~i~~~~~~~~~~~~~l~ 210 (364)
+-+++|||++.+.... .+.+..+..... ....+|++|..+. .+...+++.+ ..+.|.-.+..+.+.++.
T Consensus 298 ~ivlvIDE~~~ll~~~~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~~dvl~~~i~~n~~~RI~lrv~s~~dsr~ilg 374 (512)
T 2ius_A 298 YIVVLVDEFADLMMTVGKKVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKANIPTRIAFTVSSKIDSRTILD 374 (512)
T ss_dssp EEEEEEETHHHHHHHHHHHHHHHHHHHHHHCGGGTEEEEEEESCCCTTTSCHHHHHHCCEEEEECCSSHHHHHHHHS
T ss_pred cEEEEEeCHHHHHhhhhHHHHHHHHHHHHHhhhCCcEEEEEecCCccccccHHHHhhcCCeEEEEcCCHHHHHHhcC
Confidence 3599999997765422 333334434333 2566788887665 4666777766 678888888888876664
No 154
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.85 E-value=0.0043 Score=56.65 Aligned_cols=23 Identities=30% Similarity=0.356 Sum_probs=21.3
Q ss_pred cEEEeCCCCccHHHHHHHHHHHH
Q 017884 76 HLLLYGPPGTGKTSTILAVARKL 98 (364)
Q Consensus 76 ~lll~G~~G~GKt~la~~l~~~l 98 (364)
.++|+||+|+||||+++.++...
T Consensus 171 ~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 171 YWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 37999999999999999999876
No 155
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.84 E-value=0.0025 Score=54.46 Aligned_cols=20 Identities=40% Similarity=0.484 Sum_probs=18.8
Q ss_pred EEEeCCCCccHHHHHHHHHH
Q 017884 77 LLLYGPPGTGKTSTILAVAR 96 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~ 96 (364)
+.|.||+|+||||+++.++.
T Consensus 33 ~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 33 VLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHH
Confidence 79999999999999999984
No 156
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.82 E-value=0.0068 Score=54.38 Aligned_cols=37 Identities=19% Similarity=0.319 Sum_probs=29.3
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCccHHHHHHHHHHHHc
Q 017884 61 IVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLY 99 (364)
Q Consensus 61 ~~~~l~~~~~~~~~~~lll~G~~G~GKt~la~~l~~~l~ 99 (364)
+...+.-.+..+ ..+.+.||+|+||||+++.++..+.
T Consensus 160 ~l~~l~~~i~~g--~~v~i~G~~GsGKTTll~~l~g~~~ 196 (330)
T 2pt7_A 160 AISAIKDGIAIG--KNVIVCGGTGSGKTTYIKSIMEFIP 196 (330)
T ss_dssp HHHHHHHHHHHT--CCEEEEESTTSCHHHHHHHGGGGSC
T ss_pred HHhhhhhhccCC--CEEEEECCCCCCHHHHHHHHhCCCc
Confidence 455566666666 3589999999999999999998763
No 157
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=96.82 E-value=0.012 Score=49.11 Aligned_cols=42 Identities=17% Similarity=0.352 Sum_probs=27.9
Q ss_pred ceEEEEEeCCCCCCH--HHHHHHHHHHHHhccCccEEEEeeccc
Q 017884 141 SVKLVLLDEADAMTK--DAQFALRRVIEKYTKNTRFALICNQVN 182 (364)
Q Consensus 141 ~~~viiiDe~~~l~~--~~~~~L~~~le~~~~~~~~Il~~~~~~ 182 (364)
..+++|+||+|.+.. .....+..++...+....+++.|..+.
T Consensus 158 ~~~~lViDEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~ 201 (220)
T 1t6n_A 158 HIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLS 201 (220)
T ss_dssp TCCEEEEESHHHHHSSHHHHHHHHHHHHTSCSSSEEEEEESCCC
T ss_pred cCCEEEEcCHHHHhcccCcHHHHHHHHHhCCCcCeEEEEEeecC
Confidence 467999999998843 444556666666665667666664433
No 158
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=96.82 E-value=0.002 Score=62.86 Aligned_cols=43 Identities=21% Similarity=0.307 Sum_probs=29.4
Q ss_pred cHHHHHHHHHHHhcCCCCcEEEeCCCCccHHHHHHHHHHHHcCC
Q 017884 58 HRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101 (364)
Q Consensus 58 ~~~~~~~l~~~~~~~~~~~lll~G~~G~GKt~la~~l~~~l~~~ 101 (364)
|...+..+...+..+. .++++++|+|+|||.++-.++..+...
T Consensus 183 Q~~ai~~~~~~~~~~~-~~~ll~~~TGsGKT~~~~~~~~~l~~~ 225 (590)
T 3h1t_A 183 QQIAINRAVQSVLQGK-KRSLITMATGTGKTVVAFQISWKLWSA 225 (590)
T ss_dssp HHHHHHHHHHHHHTTC-SEEEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCC-CceEEEecCCCChHHHHHHHHHHHHhc
Confidence 4444444444444443 458999999999999988887776543
No 159
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.81 E-value=0.0031 Score=54.57 Aligned_cols=24 Identities=33% Similarity=0.642 Sum_probs=21.7
Q ss_pred cEEEeCCCCccHHHHHHHHHHHHc
Q 017884 76 HLLLYGPPGTGKTSTILAVARKLY 99 (364)
Q Consensus 76 ~lll~G~~G~GKt~la~~l~~~l~ 99 (364)
.+.|.||+|+||||+++.++..+.
T Consensus 27 ~v~i~Gp~GsGKSTll~~l~g~~~ 50 (261)
T 2eyu_A 27 LILVTGPTGSGKSTTIASMIDYIN 50 (261)
T ss_dssp EEEEECSTTCSHHHHHHHHHHHHH
T ss_pred EEEEECCCCccHHHHHHHHHHhCC
Confidence 379999999999999999998764
No 160
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.81 E-value=0.00098 Score=59.94 Aligned_cols=39 Identities=21% Similarity=0.437 Sum_probs=30.5
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCccHHHHHHHHHHHHc
Q 017884 61 IVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLY 99 (364)
Q Consensus 61 ~~~~l~~~~~~~~~~~lll~G~~G~GKt~la~~l~~~l~ 99 (364)
++..+...+..+..++++|.|++|+|||++++.+++.+.
T Consensus 11 il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 11 VLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp HHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 344444445566667799999999999999999999873
No 161
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.80 E-value=0.00065 Score=54.98 Aligned_cols=23 Identities=22% Similarity=0.429 Sum_probs=21.6
Q ss_pred cEEEeCCCCccHHHHHHHHHHHH
Q 017884 76 HLLLYGPPGTGKTSTILAVARKL 98 (364)
Q Consensus 76 ~lll~G~~G~GKt~la~~l~~~l 98 (364)
.++|+|++|+||||+++.+++.+
T Consensus 5 ~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 5 MIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 37999999999999999999997
No 162
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.77 E-value=0.0013 Score=53.70 Aligned_cols=27 Identities=22% Similarity=0.348 Sum_probs=23.5
Q ss_pred cEEEeCCCCccHHHHHHHHHHHHcCCC
Q 017884 76 HLLLYGPPGTGKTSTILAVARKLYGAQ 102 (364)
Q Consensus 76 ~lll~G~~G~GKt~la~~l~~~l~~~~ 102 (364)
.++|.|++|+||||+++.+++.+...+
T Consensus 5 ~I~i~G~~GsGKsT~~~~L~~~l~~~g 31 (192)
T 1kht_A 5 VVVVTGVPGVGSTTSSQLAMDNLRKEG 31 (192)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 479999999999999999999885443
No 163
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.76 E-value=0.00097 Score=54.59 Aligned_cols=28 Identities=25% Similarity=0.350 Sum_probs=24.0
Q ss_pred cEEEeCCCCccHHHHHHHHHHHHcCCCC
Q 017884 76 HLLLYGPPGTGKTSTILAVARKLYGAQY 103 (364)
Q Consensus 76 ~lll~G~~G~GKt~la~~l~~~l~~~~~ 103 (364)
.++|.|++|+||||+++.+++.+...+.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~~g~ 30 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDNQGI 30 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHTTTC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCc
Confidence 3789999999999999999999864443
No 164
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=96.75 E-value=0.015 Score=49.32 Aligned_cols=21 Identities=24% Similarity=0.490 Sum_probs=16.7
Q ss_pred CcEEEeCCCCccHHHHHHHHH
Q 017884 75 PHLLLYGPPGTGKTSTILAVA 95 (364)
Q Consensus 75 ~~lll~G~~G~GKt~la~~l~ 95 (364)
..+++.||+|+|||++...+.
T Consensus 77 ~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 77 SVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp SEEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEEeCCCCCcHHhHHHHH
Confidence 358999999999998665544
No 165
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.73 E-value=0.00095 Score=53.56 Aligned_cols=23 Identities=22% Similarity=0.369 Sum_probs=21.5
Q ss_pred cEEEeCCCCccHHHHHHHHHHHH
Q 017884 76 HLLLYGPPGTGKTSTILAVARKL 98 (364)
Q Consensus 76 ~lll~G~~G~GKt~la~~l~~~l 98 (364)
.++|.|++|+||||+++.+++.+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999987
No 166
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.72 E-value=0.0058 Score=53.93 Aligned_cols=23 Identities=35% Similarity=0.624 Sum_probs=21.2
Q ss_pred cEEEeCCCCccHHHHHHHHHHHH
Q 017884 76 HLLLYGPPGTGKTSTILAVARKL 98 (364)
Q Consensus 76 ~lll~G~~G~GKt~la~~l~~~l 98 (364)
.++|.||+|+|||+++..+++.+
T Consensus 5 ~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp EEEEECCTTSCHHHHHHHHHHTT
T ss_pred EEEEECCCcCCHHHHHHHHHHhC
Confidence 37899999999999999999986
No 167
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=96.68 E-value=0.0047 Score=67.30 Aligned_cols=29 Identities=28% Similarity=0.385 Sum_probs=24.4
Q ss_pred EEEeCCCCccHHHHHHHHHHHHcCCCCCC
Q 017884 77 LLLYGPPGTGKTSTILAVARKLYGAQYHN 105 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l~~~~~~~ 105 (364)
++++||||+|||+++.+++.+....+...
T Consensus 1084 vll~G~~GtGKT~la~~~~~ea~k~Ge~~ 1112 (2050)
T 3cmu_A 1084 VEIYGPESSGKTTLTLQVIAAAQREGKTC 1112 (2050)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHTTTCCE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCeE
Confidence 89999999999999999998876554433
No 168
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.66 E-value=0.0013 Score=53.42 Aligned_cols=24 Identities=46% Similarity=0.689 Sum_probs=22.2
Q ss_pred CcEEEeCCCCccHHHHHHHHHHHH
Q 017884 75 PHLLLYGPPGTGKTSTILAVARKL 98 (364)
Q Consensus 75 ~~lll~G~~G~GKt~la~~l~~~l 98 (364)
+.++|+|++|+||||+++.+++.+
T Consensus 12 ~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHh
Confidence 458999999999999999999987
No 169
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.66 E-value=0.0013 Score=54.46 Aligned_cols=24 Identities=46% Similarity=0.510 Sum_probs=22.4
Q ss_pred CcEEEeCCCCccHHHHHHHHHHHH
Q 017884 75 PHLLLYGPPGTGKTSTILAVARKL 98 (364)
Q Consensus 75 ~~lll~G~~G~GKt~la~~l~~~l 98 (364)
..++|.|++|+||||+++.+++.+
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHc
Confidence 458999999999999999999997
No 170
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=96.65 E-value=0.0086 Score=49.43 Aligned_cols=39 Identities=28% Similarity=0.421 Sum_probs=25.0
Q ss_pred ceEEEEEeCCCCCCH-HHHHHHHHHHHHhccCccEEEEee
Q 017884 141 SVKLVLLDEADAMTK-DAQFALRRVIEKYTKNTRFALICN 179 (364)
Q Consensus 141 ~~~viiiDe~~~l~~-~~~~~L~~~le~~~~~~~~Il~~~ 179 (364)
..+++|+||+|.+.. .....+..++...+.+..+++.|.
T Consensus 146 ~~~~lViDEah~~~~~~~~~~l~~i~~~~~~~~~~l~~SA 185 (206)
T 1vec_A 146 HVQMIVLDEADKLLSQDFVQIMEDIILTLPKNRQILLYSA 185 (206)
T ss_dssp TCCEEEEETHHHHTSTTTHHHHHHHHHHSCTTCEEEEEES
T ss_pred cCCEEEEEChHHhHhhCcHHHHHHHHHhCCccceEEEEEe
Confidence 467999999997754 334455555655555666666553
No 171
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=96.64 E-value=0.0084 Score=54.73 Aligned_cols=39 Identities=31% Similarity=0.364 Sum_probs=25.5
Q ss_pred ceEEEEEeCCCCCCH--HHHHHHHHHHHHhccCccEEEEee
Q 017884 141 SVKLVLLDEADAMTK--DAQFALRRVIEKYTKNTRFALICN 179 (364)
Q Consensus 141 ~~~viiiDe~~~l~~--~~~~~L~~~le~~~~~~~~Il~~~ 179 (364)
...+||+||+|.+.. .....+..++...+....+++.|.
T Consensus 145 ~~~~iIiDEah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SA 185 (395)
T 3pey_A 145 KIKIFVLDEADNMLDQQGLGDQCIRVKRFLPKDTQLVLFSA 185 (395)
T ss_dssp TCCEEEEETHHHHHHSTTHHHHHHHHHHTSCTTCEEEEEES
T ss_pred cCCEEEEEChhhhcCccccHHHHHHHHHhCCCCcEEEEEEe
Confidence 467999999998754 233445555555555667766663
No 172
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.61 E-value=0.0013 Score=53.05 Aligned_cols=24 Identities=29% Similarity=0.519 Sum_probs=22.2
Q ss_pred CcEEEeCCCCccHHHHHHHHHHHH
Q 017884 75 PHLLLYGPPGTGKTSTILAVARKL 98 (364)
Q Consensus 75 ~~lll~G~~G~GKt~la~~l~~~l 98 (364)
+.++|.|++|+||||+++.+++.+
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHc
Confidence 458999999999999999999987
No 173
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=96.61 E-value=0.0053 Score=51.55 Aligned_cols=40 Identities=23% Similarity=0.380 Sum_probs=25.6
Q ss_pred ceEEEEEeCCCCCCHH-HHHHHHHHHHHhccCccEEEEeec
Q 017884 141 SVKLVLLDEADAMTKD-AQFALRRVIEKYTKNTRFALICNQ 180 (364)
Q Consensus 141 ~~~viiiDe~~~l~~~-~~~~L~~~le~~~~~~~~Il~~~~ 180 (364)
...++|+||+|.+... ....+..++...+....+++.|..
T Consensus 155 ~~~~iViDEah~~~~~~~~~~l~~i~~~~~~~~~~i~lSAT 195 (224)
T 1qde_A 155 KIKMFILDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSAT 195 (224)
T ss_dssp TCCEEEEETHHHHHHTTCHHHHHHHHHHSCTTCEEEEEESS
T ss_pred hCcEEEEcChhHHhhhhhHHHHHHHHHhCCccCeEEEEEee
Confidence 3679999999987542 234455666665556666665543
No 174
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.59 E-value=0.002 Score=51.52 Aligned_cols=25 Identities=36% Similarity=0.530 Sum_probs=22.3
Q ss_pred CCcEEEeCCCCccHHHHHHHHHHHH
Q 017884 74 LPHLLLYGPPGTGKTSTILAVARKL 98 (364)
Q Consensus 74 ~~~lll~G~~G~GKt~la~~l~~~l 98 (364)
+.+++|.|++|+||||+++.+++.+
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHHh
Confidence 3458999999999999999999987
No 175
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=96.58 E-value=0.0038 Score=55.29 Aligned_cols=42 Identities=21% Similarity=0.375 Sum_probs=30.4
Q ss_pred ceEEEEEeCCC-CCCHHHHHHHHHHHHHhccCccEEEEeeccc
Q 017884 141 SVKLVLLDEAD-AMTKDAQFALRRVIEKYTKNTRFALICNQVN 182 (364)
Q Consensus 141 ~~~viiiDe~~-~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~ 182 (364)
+++++++||.- .|.......+.+.+.+......+|+++....
T Consensus 208 ~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~ 250 (306)
T 3nh6_A 208 APGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLS 250 (306)
T ss_dssp CCSEEEEECCSSCCCHHHHHHHHHHHHHHHTTSEEEEECCSHH
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEEcChH
Confidence 57899999964 4556677778888877655666777876544
No 176
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=96.56 E-value=0.0079 Score=54.29 Aligned_cols=39 Identities=28% Similarity=0.419 Sum_probs=25.5
Q ss_pred ceEEEEEeCCCCCCHH-HHHHHHHHHHHhccCccEEEEee
Q 017884 141 SVKLVLLDEADAMTKD-AQFALRRVIEKYTKNTRFALICN 179 (364)
Q Consensus 141 ~~~viiiDe~~~l~~~-~~~~L~~~le~~~~~~~~Il~~~ 179 (364)
..+++|+||+|.+... ....+..++...+....+++.|.
T Consensus 147 ~~~~iIiDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SA 186 (367)
T 1hv8_A 147 NVKYFILDEADEMLNMGFIKDVEKILNACNKDKRILLFSA 186 (367)
T ss_dssp SCCEEEEETHHHHHTTTTHHHHHHHHHTSCSSCEEEEECS
T ss_pred cCCEEEEeCchHhhhhchHHHHHHHHHhCCCCceEEEEee
Confidence 3679999999987432 23455556665556667666653
No 177
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.54 E-value=0.0014 Score=52.74 Aligned_cols=23 Identities=35% Similarity=0.644 Sum_probs=21.6
Q ss_pred cEEEeCCCCccHHHHHHHHHHHH
Q 017884 76 HLLLYGPPGTGKTSTILAVARKL 98 (364)
Q Consensus 76 ~lll~G~~G~GKt~la~~l~~~l 98 (364)
.+.|.||+|+||||+++.++..+
T Consensus 6 ~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999986
No 178
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=96.54 E-value=0.0042 Score=61.21 Aligned_cols=42 Identities=24% Similarity=0.385 Sum_probs=31.1
Q ss_pred cHHHHHHHHHHHhcCCCCcEEEeCCCCccHHHHHHHHHHHHcCC
Q 017884 58 HRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101 (364)
Q Consensus 58 ~~~~~~~l~~~~~~~~~~~lll~G~~G~GKt~la~~l~~~l~~~ 101 (364)
++.....+...+... +..+|+||||||||+++-.+...+...
T Consensus 191 N~~Q~~AV~~al~~~--~~~lI~GPPGTGKT~ti~~~I~~l~~~ 232 (646)
T 4b3f_X 191 DTSQKEAVLFALSQK--ELAIIHGPPGTGKTTTVVEIILQAVKQ 232 (646)
T ss_dssp CHHHHHHHHHHHHCS--SEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHhcCC--CceEEECCCCCCHHHHHHHHHHHHHhC
Confidence 567777777777643 347999999999998777666665443
No 179
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.54 E-value=0.0018 Score=52.65 Aligned_cols=24 Identities=38% Similarity=0.654 Sum_probs=22.1
Q ss_pred CcEEEeCCCCccHHHHHHHHHHHH
Q 017884 75 PHLLLYGPPGTGKTSTILAVARKL 98 (364)
Q Consensus 75 ~~lll~G~~G~GKt~la~~l~~~l 98 (364)
+.++|.|++|+||||+++.+++.+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 348999999999999999999987
No 180
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.52 E-value=0.0099 Score=63.97 Aligned_cols=68 Identities=21% Similarity=0.305 Sum_probs=43.3
Q ss_pred EEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCCC---------------------ChHHHHHHHHHHHhcCccc
Q 017884 77 LLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDR---------------------GIDVVRQQIQDFASTQSFS 135 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~i~~~~~~~~~~ 135 (364)
++|+||||+|||+++..++..+...+ ..++.++..... ..+.+.+.+......
T Consensus 735 VlI~G~PG~GKTtLal~lA~~aa~~g--~~VlyiS~Ees~~ql~A~~lGvd~~~L~i~~~~~leei~~~l~~lv~~---- 808 (1706)
T 3cmw_A 735 VEIYGPESSGKTTLTLQVIAAAQREG--KTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARS---- 808 (1706)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTT--CCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHH----
T ss_pred EEEECCCCCCcHHHHHHHHHHHHHcC--CCeEEEeccchHHHHHHHHcCCChhheEEecCCcHHHHHHHHHHHHHc----
Confidence 79999999999999999998875332 234454443321 122233333322211
Q ss_pred cCCccceEEEEEeCCCCCC
Q 017884 136 FGVKASVKLVLLDEADAMT 154 (364)
Q Consensus 136 ~~~~~~~~viiiDe~~~l~ 154 (364)
...++||||.++.+.
T Consensus 809 ----~~~~lVVIDsLq~l~ 823 (1706)
T 3cmw_A 809 ----GAVDVIVVDSVAALT 823 (1706)
T ss_dssp ----TCCSEEEESCSTTCC
T ss_pred ----cCCCEEEEechhhhc
Confidence 146799999999987
No 181
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=96.52 E-value=0.036 Score=52.01 Aligned_cols=23 Identities=26% Similarity=0.498 Sum_probs=21.2
Q ss_pred EEEeCCCCccHHHHHHHHHHHHc
Q 017884 77 LLLYGPPGTGKTSTILAVARKLY 99 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l~ 99 (364)
++|.|+||+|||+++..++..+.
T Consensus 206 iiI~G~pG~GKTtl~l~ia~~~~ 228 (454)
T 2r6a_A 206 IIVAARPSVGKTAFALNIAQNVA 228 (454)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 79999999999999999998764
No 182
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.52 E-value=0.017 Score=51.42 Aligned_cols=47 Identities=21% Similarity=0.309 Sum_probs=32.3
Q ss_pred HHHHHHhcCCCCc--EEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCC
Q 017884 64 TIDRLTSENRLPH--LLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNAS 113 (364)
Q Consensus 64 ~l~~~~~~~~~~~--lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~ 113 (364)
.|...+ .|-.+. ++|.|+||+|||+++..++......+ ..++.++..
T Consensus 57 ~LD~~l-gGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g--~~vl~~slE 105 (315)
T 3bh0_A 57 ELDRMT-YGYKRRNFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLE 105 (315)
T ss_dssp HHHHHH-SSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTT--CEEEEEESS
T ss_pred HHHhhc-CCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEECC
Confidence 344445 443333 79999999999999999998765444 455566554
No 183
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=96.51 E-value=0.014 Score=53.73 Aligned_cols=39 Identities=28% Similarity=0.372 Sum_probs=24.9
Q ss_pred ceEEEEEeCCCCCCH--HHHHHHHHHHHHhccCccEEEEee
Q 017884 141 SVKLVLLDEADAMTK--DAQFALRRVIEKYTKNTRFALICN 179 (364)
Q Consensus 141 ~~~viiiDe~~~l~~--~~~~~L~~~le~~~~~~~~Il~~~ 179 (364)
..++||+||+|.+.. .....+..++...+.+..+|+.|.
T Consensus 168 ~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SA 208 (412)
T 3fht_A 168 KIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSA 208 (412)
T ss_dssp GCCEEEEETHHHHHSTTTTHHHHHHHHHTSCTTCEEEEEES
T ss_pred hCcEEEEeCHHHHhhcCCcHHHHHHHHhhCCCCceEEEEEe
Confidence 477999999997742 233444455555556667776663
No 184
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.50 E-value=0.007 Score=53.40 Aligned_cols=22 Identities=32% Similarity=0.443 Sum_probs=20.3
Q ss_pred EEEeCCCCccHHHHHHHHHHHH
Q 017884 77 LLLYGPPGTGKTSTILAVARKL 98 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l 98 (364)
++|.|+||+||||+++.+++.+
T Consensus 5 I~l~G~~GsGKST~a~~L~~~~ 26 (301)
T 1ltq_A 5 ILTIGCPGSGKSTWAREFIAKN 26 (301)
T ss_dssp EEEECCTTSSHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 7999999999999999999863
No 185
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.50 E-value=0.0019 Score=53.47 Aligned_cols=24 Identities=33% Similarity=0.556 Sum_probs=21.9
Q ss_pred CcEEEeCCCCccHHHHHHHHHHHH
Q 017884 75 PHLLLYGPPGTGKTSTILAVARKL 98 (364)
Q Consensus 75 ~~lll~G~~G~GKt~la~~l~~~l 98 (364)
..++|.||+|+||||+++.++..+
T Consensus 30 ~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHhh
Confidence 448999999999999999999987
No 186
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.48 E-value=0.0023 Score=55.14 Aligned_cols=23 Identities=35% Similarity=0.660 Sum_probs=21.4
Q ss_pred cEEEeCCCCccHHHHHHHHHHHH
Q 017884 76 HLLLYGPPGTGKTSTILAVARKL 98 (364)
Q Consensus 76 ~lll~G~~G~GKt~la~~l~~~l 98 (364)
.++|.||+|+||||+++.+++.+
T Consensus 3 li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhcC
Confidence 36899999999999999999987
No 187
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.44 E-value=0.0033 Score=55.25 Aligned_cols=22 Identities=45% Similarity=0.611 Sum_probs=20.8
Q ss_pred EEEeCCCCccHHHHHHHHHHHH
Q 017884 77 LLLYGPPGTGKTSTILAVARKL 98 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l 98 (364)
++|.||||+||||+++.+++.+
T Consensus 36 ivl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 36 FLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp EEEECCTTSCTHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7999999999999999999886
No 188
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=96.43 E-value=0.023 Score=47.54 Aligned_cols=22 Identities=32% Similarity=0.386 Sum_probs=19.7
Q ss_pred EEEeCCCCccHHHHHHHHHHHH
Q 017884 77 LLLYGPPGTGKTSTILAVARKL 98 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l 98 (364)
++|.|.+|+|||+++..+...-
T Consensus 16 ivlvGd~~VGKTsLi~r~~~~~ 37 (216)
T 4dkx_A 16 LVFLGEQSVGKTSLITRFMYDS 37 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECcCCcCHHHHHHHHHhCC
Confidence 8999999999999999988643
No 189
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.42 E-value=0.0026 Score=52.63 Aligned_cols=24 Identities=29% Similarity=0.526 Sum_probs=22.2
Q ss_pred cEEEeCCCCccHHHHHHHHHHHHc
Q 017884 76 HLLLYGPPGTGKTSTILAVARKLY 99 (364)
Q Consensus 76 ~lll~G~~G~GKt~la~~l~~~l~ 99 (364)
.+.|.||+|+||||+++.++..+.
T Consensus 27 ~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 27 VIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 379999999999999999999985
No 190
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=96.40 E-value=0.016 Score=50.47 Aligned_cols=43 Identities=9% Similarity=0.246 Sum_probs=31.5
Q ss_pred ceEEEEEeCC-CCCCHHHHHHHHHHHHHhc-c-CccEEEEeecccc
Q 017884 141 SVKLVLLDEA-DAMTKDAQFALRRVIEKYT-K-NTRFALICNQVNK 183 (364)
Q Consensus 141 ~~~viiiDe~-~~l~~~~~~~L~~~le~~~-~-~~~~Il~~~~~~~ 183 (364)
+++++++||. ..|.......+.+++.+.. . ...+|+++.....
T Consensus 161 ~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~ 206 (275)
T 3gfo_A 161 EPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDI 206 (275)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSS
T ss_pred CCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHH
Confidence 6889999995 4567777888888887754 2 5567788876554
No 191
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.40 E-value=0.0019 Score=52.68 Aligned_cols=26 Identities=35% Similarity=0.459 Sum_probs=23.0
Q ss_pred EEEeCCCCccHHHHHHHHHHHHcCCC
Q 017884 77 LLLYGPPGTGKTSTILAVARKLYGAQ 102 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l~~~~ 102 (364)
++|.|++|+||||+++.++..+...+
T Consensus 16 i~l~G~~GsGKsT~~~~L~~~l~~~~ 41 (186)
T 2yvu_A 16 VWLTGLPGSGKTTIATRLADLLQKEG 41 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHhcC
Confidence 79999999999999999999985443
No 192
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=96.38 E-value=0.026 Score=49.25 Aligned_cols=38 Identities=18% Similarity=0.128 Sum_probs=27.1
Q ss_pred cHHHHHHHHHHHhcCCCCcEEEeCCCCccHHHHHHHHHHHH
Q 017884 58 HRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKL 98 (364)
Q Consensus 58 ~~~~~~~l~~~~~~~~~~~lll~G~~G~GKt~la~~l~~~l 98 (364)
++.....+..++.. ...++.+|+|+|||.++..++...
T Consensus 115 ~~~Q~~ai~~~l~~---~~~ll~~~tGsGKT~~~~~~~~~~ 152 (282)
T 1rif_A 115 HWYQKDAVFEGLVN---RRRILNLPTSAGRSLIQALLARYY 152 (282)
T ss_dssp CHHHHHHHHHHHHH---SEEEECCCTTSCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhc---CCeEEEcCCCCCcHHHHHHHHHHH
Confidence 44455555555654 346889999999999987777654
No 193
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.38 E-value=0.0018 Score=53.06 Aligned_cols=22 Identities=41% Similarity=0.607 Sum_probs=21.1
Q ss_pred EEEeCCCCccHHHHHHHHHHHH
Q 017884 77 LLLYGPPGTGKTSTILAVARKL 98 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l 98 (364)
++|.|+||+||||+++.+++.+
T Consensus 8 I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 8 IIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7999999999999999999987
No 194
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.38 E-value=0.002 Score=53.31 Aligned_cols=23 Identities=30% Similarity=0.463 Sum_probs=21.7
Q ss_pred cEEEeCCCCccHHHHHHHHHHHH
Q 017884 76 HLLLYGPPGTGKTSTILAVARKL 98 (364)
Q Consensus 76 ~lll~G~~G~GKt~la~~l~~~l 98 (364)
.++|.|++|+||||+++.+++.+
T Consensus 20 ~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 20 SIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp CEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999987
No 195
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.37 E-value=0.0046 Score=51.16 Aligned_cols=40 Identities=20% Similarity=0.159 Sum_probs=28.7
Q ss_pred HHHHHHHHHHhcCC--CCc-EEEeCCCCccHHHHHHHHHHHHc
Q 017884 60 DIVDTIDRLTSENR--LPH-LLLYGPPGTGKTSTILAVARKLY 99 (364)
Q Consensus 60 ~~~~~l~~~~~~~~--~~~-lll~G~~G~GKt~la~~l~~~l~ 99 (364)
+.+..+...+.... .+. +.|.|++|+||||+++.++..+.
T Consensus 5 ~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~~ 47 (201)
T 1rz3_A 5 DRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLR 47 (201)
T ss_dssp HHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 44555555554422 122 79999999999999999999874
No 196
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.36 E-value=0.0025 Score=51.13 Aligned_cols=24 Identities=29% Similarity=0.445 Sum_probs=22.1
Q ss_pred CcEEEeCCCCccHHHHHHHHHHHH
Q 017884 75 PHLLLYGPPGTGKTSTILAVARKL 98 (364)
Q Consensus 75 ~~lll~G~~G~GKt~la~~l~~~l 98 (364)
..++|.|++|+||||+++.+++.+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 348999999999999999999987
No 197
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.35 E-value=0.0022 Score=52.17 Aligned_cols=22 Identities=36% Similarity=0.806 Sum_probs=21.0
Q ss_pred EEEeCCCCccHHHHHHHHHHHH
Q 017884 77 LLLYGPPGTGKTSTILAVARKL 98 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l 98 (364)
++|.|++|+||||+++.+++.+
T Consensus 7 I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 7 VIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7999999999999999999987
No 198
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=96.35 E-value=0.017 Score=47.53 Aligned_cols=40 Identities=20% Similarity=0.254 Sum_probs=24.8
Q ss_pred ceEEEEEeCCCCCCHH-HHHHHHHHHHHhccCccEEEEeec
Q 017884 141 SVKLVLLDEADAMTKD-AQFALRRVIEKYTKNTRFALICNQ 180 (364)
Q Consensus 141 ~~~viiiDe~~~l~~~-~~~~L~~~le~~~~~~~~Il~~~~ 180 (364)
..+++|+||+|.+... ....+..++...+....+++.|..
T Consensus 144 ~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT 184 (207)
T 2gxq_A 144 RVEVAVLDEADEMLSMGFEEEVEALLSATPPSRQTLLFSAT 184 (207)
T ss_dssp TCSEEEEESHHHHHHTTCHHHHHHHHHTSCTTSEEEEECSS
T ss_pred hceEEEEEChhHhhccchHHHHHHHHHhCCccCeEEEEEEe
Confidence 3679999999987532 234455555555556666665543
No 199
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.34 E-value=0.0026 Score=51.89 Aligned_cols=24 Identities=46% Similarity=0.686 Sum_probs=21.8
Q ss_pred CcEEEeCCCCccHHHHHHHHHHHH
Q 017884 75 PHLLLYGPPGTGKTSTILAVARKL 98 (364)
Q Consensus 75 ~~lll~G~~G~GKt~la~~l~~~l 98 (364)
..++|+|++|+||||+++.+++.+
T Consensus 11 ~~I~l~G~~GsGKSTv~~~La~~l 34 (184)
T 1y63_A 11 INILITGTPGTGKTSMAEMIAAEL 34 (184)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHHhc
Confidence 458999999999999999999983
No 200
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.33 E-value=0.0027 Score=53.38 Aligned_cols=24 Identities=29% Similarity=0.672 Sum_probs=22.0
Q ss_pred CcEEEeCCCCccHHHHHHHHHHHH
Q 017884 75 PHLLLYGPPGTGKTSTILAVARKL 98 (364)
Q Consensus 75 ~~lll~G~~G~GKt~la~~l~~~l 98 (364)
..++|.|+||+||||+++.+++.+
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 348999999999999999999987
No 201
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.32 E-value=0.0037 Score=53.84 Aligned_cols=22 Identities=32% Similarity=0.498 Sum_probs=21.0
Q ss_pred EEEeCCCCccHHHHHHHHHHHH
Q 017884 77 LLLYGPPGTGKTSTILAVARKL 98 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l 98 (364)
++|.|+||+||||+++.+++.+
T Consensus 35 i~l~G~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 35 ILLGGQSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp EEEESCGGGTTHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHhc
Confidence 7999999999999999999986
No 202
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.32 E-value=0.012 Score=52.01 Aligned_cols=27 Identities=26% Similarity=0.397 Sum_probs=23.1
Q ss_pred EEEeCCCCccHHHHHHHHHHHHcCCCC
Q 017884 77 LLLYGPPGTGKTSTILAVARKLYGAQY 103 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l~~~~~ 103 (364)
+++.|++|+||||++..++..+...+.
T Consensus 107 i~ivG~~GsGKTTl~~~LA~~l~~~g~ 133 (306)
T 1vma_A 107 IMVVGVNGTGKTTSCGKLAKMFVDEGK 133 (306)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHHTTC
T ss_pred EEEEcCCCChHHHHHHHHHHHHHhcCC
Confidence 699999999999999999998754433
No 203
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.32 E-value=0.0026 Score=51.68 Aligned_cols=22 Identities=27% Similarity=0.427 Sum_probs=20.6
Q ss_pred EEEeCCCCccHHHHHHHHHHHH
Q 017884 77 LLLYGPPGTGKTSTILAVARKL 98 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l 98 (364)
+.|.||+|+||||+++.++..+
T Consensus 8 i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 8 LVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHhhC
Confidence 7999999999999999999875
No 204
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.26 E-value=0.0084 Score=55.53 Aligned_cols=51 Identities=25% Similarity=0.384 Sum_probs=36.5
Q ss_pred CCCcchhccHHHHHHHHHHHhcCCCCcEEEeCCCCccHHHHHHHHHHHHcCC
Q 017884 50 QSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101 (364)
Q Consensus 50 ~~~~~~vg~~~~~~~l~~~~~~~~~~~lll~G~~G~GKt~la~~l~~~l~~~ 101 (364)
.+++++.-.......|...+. .....++|.||+|+||||++++++..+...
T Consensus 144 ~~l~~Lg~~~~~~~~L~~l~~-~~ggii~I~GpnGSGKTTlL~allg~l~~~ 194 (418)
T 1p9r_A 144 LDLHSLGMTAHNHDNFRRLIK-RPHGIILVTGPTGSGKSTTLYAGLQELNSS 194 (418)
T ss_dssp CCGGGSCCCHHHHHHHHHHHT-SSSEEEEEECSTTSCHHHHHHHHHHHHCCT
T ss_pred CCHHHcCCCHHHHHHHHHHHH-hcCCeEEEECCCCCCHHHHHHHHHhhcCCC
Confidence 456666555555566666653 222237999999999999999999988543
No 205
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.25 E-value=0.0042 Score=51.69 Aligned_cols=39 Identities=21% Similarity=0.271 Sum_probs=27.9
Q ss_pred HHHHHHHHHhcC-CCCc-EEEeCCCCccHHHHHHHHHHHHc
Q 017884 61 IVDTIDRLTSEN-RLPH-LLLYGPPGTGKTSTILAVARKLY 99 (364)
Q Consensus 61 ~~~~l~~~~~~~-~~~~-lll~G~~G~GKt~la~~l~~~l~ 99 (364)
++..|...+... ..+. +.|.||+|+||||+++.++..+.
T Consensus 7 ~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 7 LCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp HHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 444554444432 2222 79999999999999999999875
No 206
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.25 E-value=0.0027 Score=52.06 Aligned_cols=24 Identities=25% Similarity=0.513 Sum_probs=22.1
Q ss_pred CcEEEeCCCCccHHHHHHHHHHHH
Q 017884 75 PHLLLYGPPGTGKTSTILAVARKL 98 (364)
Q Consensus 75 ~~lll~G~~G~GKt~la~~l~~~l 98 (364)
..++|.|++|+||||+++.+++.+
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 348999999999999999999987
No 207
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=96.24 E-value=0.0075 Score=54.98 Aligned_cols=42 Identities=17% Similarity=0.274 Sum_probs=30.4
Q ss_pred ceEEEEEeCC-CCCCHHHHHHHHHHHHHhcc--CccEEEEeeccc
Q 017884 141 SVKLVLLDEA-DAMTKDAQFALRRVIEKYTK--NTRFALICNQVN 182 (364)
Q Consensus 141 ~~~viiiDe~-~~l~~~~~~~L~~~le~~~~--~~~~Il~~~~~~ 182 (364)
+++++++||- ..|....+..++..+.+... ...+|++|....
T Consensus 151 ~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ 195 (381)
T 3rlf_A 151 EPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV 195 (381)
T ss_dssp CCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHH
T ss_pred CCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHH
Confidence 6789999994 56667777888888776532 466788886544
No 208
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.23 E-value=0.0027 Score=52.75 Aligned_cols=25 Identities=20% Similarity=0.207 Sum_probs=22.7
Q ss_pred EEEeCCCCccHHHHHHHHHHHHcCC
Q 017884 77 LLLYGPPGTGKTSTILAVARKLYGA 101 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l~~~ 101 (364)
++|.|++|+||||+++.+++.+...
T Consensus 7 I~i~G~~GsGKsT~~~~L~~~l~~~ 31 (213)
T 2plr_A 7 IAFEGIDGSGKSSQATLLKDWIELK 31 (213)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHTTT
T ss_pred EEEEcCCCCCHHHHHHHHHHHHhhc
Confidence 7999999999999999999998543
No 209
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.23 E-value=0.0028 Score=52.42 Aligned_cols=22 Identities=50% Similarity=0.930 Sum_probs=21.1
Q ss_pred EEEeCCCCccHHHHHHHHHHHH
Q 017884 77 LLLYGPPGTGKTSTILAVARKL 98 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l 98 (364)
++|.|++|+||||+++.+++.+
T Consensus 23 I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 23 VLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7999999999999999999987
No 210
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.23 E-value=0.0029 Score=52.53 Aligned_cols=23 Identities=35% Similarity=0.621 Sum_probs=21.3
Q ss_pred cEEEeCCCCccHHHHHHHHHHHH
Q 017884 76 HLLLYGPPGTGKTSTILAVARKL 98 (364)
Q Consensus 76 ~lll~G~~G~GKt~la~~l~~~l 98 (364)
.++|.||+|+||||+++.++..+
T Consensus 14 ~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 14 PLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 37999999999999999999986
No 211
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.22 E-value=0.0029 Score=53.20 Aligned_cols=25 Identities=20% Similarity=0.393 Sum_probs=22.6
Q ss_pred CcEEEeCCCCccHHHHHHHHHHHHc
Q 017884 75 PHLLLYGPPGTGKTSTILAVARKLY 99 (364)
Q Consensus 75 ~~lll~G~~G~GKt~la~~l~~~l~ 99 (364)
..++|.|++|+||||+++.+++.+.
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3489999999999999999999973
No 212
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.22 E-value=0.0028 Score=51.81 Aligned_cols=22 Identities=27% Similarity=0.599 Sum_probs=21.0
Q ss_pred EEEeCCCCccHHHHHHHHHHHH
Q 017884 77 LLLYGPPGTGKTSTILAVARKL 98 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l 98 (364)
++|.|++|+||||+++.+++.+
T Consensus 6 I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 6 VFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7999999999999999999987
No 213
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.22 E-value=0.0028 Score=52.75 Aligned_cols=22 Identities=36% Similarity=0.750 Sum_probs=20.8
Q ss_pred EEEeCCCCccHHHHHHHHHHHH
Q 017884 77 LLLYGPPGTGKTSTILAVARKL 98 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l 98 (364)
++|.||||+||+|.++.+++.+
T Consensus 3 Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6889999999999999999987
No 214
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=96.21 E-value=0.044 Score=43.58 Aligned_cols=21 Identities=29% Similarity=0.480 Sum_probs=19.5
Q ss_pred EEEeCCCCccHHHHHHHHHHH
Q 017884 77 LLLYGPPGTGKTSTILAVARK 97 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~ 97 (364)
+++.|++|+|||+++..+...
T Consensus 10 i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 10 VILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 899999999999999999865
No 215
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=96.21 E-value=0.022 Score=47.59 Aligned_cols=39 Identities=15% Similarity=0.300 Sum_probs=24.9
Q ss_pred ceEEEEEeCCCCCCHH-HHHHHHHHHHHhccCccEEEEee
Q 017884 141 SVKLVLLDEADAMTKD-AQFALRRVIEKYTKNTRFALICN 179 (364)
Q Consensus 141 ~~~viiiDe~~~l~~~-~~~~L~~~le~~~~~~~~Il~~~ 179 (364)
..+++|+||+|.+... ....+..++...+....+++.|.
T Consensus 150 ~~~~lViDEah~~~~~~~~~~l~~i~~~~~~~~~~l~~SA 189 (219)
T 1q0u_A 150 TAHILVVDEADLMLDMGFITDVDQIAARMPKDLQMLVFSA 189 (219)
T ss_dssp GCCEEEECSHHHHHHTTCHHHHHHHHHTSCTTCEEEEEES
T ss_pred cceEEEEcCchHHhhhChHHHHHHHHHhCCcccEEEEEec
Confidence 4678999999987532 23445556665555666665553
No 216
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=96.19 E-value=0.2 Score=38.91 Aligned_cols=22 Identities=18% Similarity=0.412 Sum_probs=19.8
Q ss_pred EEEeCCCCccHHHHHHHHHHHH
Q 017884 77 LLLYGPPGTGKTSTILAVARKL 98 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l 98 (364)
+++.|++|+|||+++..+...-
T Consensus 6 i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 6 VVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 7999999999999999998653
No 217
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.18 E-value=0.0042 Score=49.79 Aligned_cols=37 Identities=11% Similarity=0.046 Sum_probs=28.5
Q ss_pred CCcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEE
Q 017884 74 LPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILEL 110 (364)
Q Consensus 74 ~~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~ 110 (364)
++.+.|.|++|+||||++..++..+...+....++..
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik~ 40 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKH 40 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEEe
Confidence 4457999999999999999999988655554444443
No 218
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.18 E-value=0.003 Score=51.61 Aligned_cols=23 Identities=26% Similarity=0.580 Sum_probs=21.0
Q ss_pred cEEEeCCCCccHHHHHHHHHHHH
Q 017884 76 HLLLYGPPGTGKTSTILAVARKL 98 (364)
Q Consensus 76 ~lll~G~~G~GKt~la~~l~~~l 98 (364)
.++|+||+|+||||+++.+....
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 38999999999999999998875
No 219
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=96.18 E-value=0.018 Score=54.31 Aligned_cols=40 Identities=28% Similarity=0.363 Sum_probs=26.2
Q ss_pred ceEEEEEeCCCCCCH--HHHHHHHHHHHHhccCccEEEEeec
Q 017884 141 SVKLVLLDEADAMTK--DAQFALRRVIEKYTKNTRFALICNQ 180 (364)
Q Consensus 141 ~~~viiiDe~~~l~~--~~~~~L~~~le~~~~~~~~Il~~~~ 180 (364)
..++|||||+|.+.. .....+..++...+.++.+|+.|..
T Consensus 235 ~~~~iViDEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT 276 (479)
T 3fmp_B 235 KIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSAT 276 (479)
T ss_dssp GCCEEEECCHHHHHTSTTHHHHHHHHHTTSCTTSEEEEEESC
T ss_pred cCCEEEEECHHHHhhcCCcHHHHHHHHhhCCccceEEEEeCC
Confidence 477999999997743 3344455555555566777776643
No 220
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=96.18 E-value=0.012 Score=50.00 Aligned_cols=39 Identities=23% Similarity=0.377 Sum_probs=24.5
Q ss_pred ceEEEEEeCCCCCCHH-HHHHHHHHHHHhccCccEEEEee
Q 017884 141 SVKLVLLDEADAMTKD-AQFALRRVIEKYTKNTRFALICN 179 (364)
Q Consensus 141 ~~~viiiDe~~~l~~~-~~~~L~~~le~~~~~~~~Il~~~ 179 (364)
..++||+||+|.+... ....+..++...+....+++.|.
T Consensus 173 ~~~~lViDEah~~~~~~~~~~l~~i~~~~~~~~~~i~~SA 212 (237)
T 3bor_A 173 WIKMFVLDEADEMLSRGFKDQIYEIFQKLNTSIQVVLLSA 212 (237)
T ss_dssp TCCEEEEESHHHHHHTTCHHHHHHHHHHSCTTCEEEEECS
T ss_pred cCcEEEECCchHhhccCcHHHHHHHHHhCCCCCeEEEEEE
Confidence 3679999999977432 23445555555555666666553
No 221
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.17 E-value=0.0031 Score=50.77 Aligned_cols=22 Identities=36% Similarity=0.611 Sum_probs=20.8
Q ss_pred EEEeCCCCccHHHHHHHHHHHH
Q 017884 77 LLLYGPPGTGKTSTILAVARKL 98 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l 98 (364)
++|.|++|+||||+++.++..+
T Consensus 11 i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 11 YVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp EEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHhh
Confidence 7999999999999999999886
No 222
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=96.15 E-value=0.072 Score=43.07 Aligned_cols=24 Identities=29% Similarity=0.606 Sum_probs=20.9
Q ss_pred CcEEEeCCCCccHHHHHHHHHHHH
Q 017884 75 PHLLLYGPPGTGKTSTILAVARKL 98 (364)
Q Consensus 75 ~~lll~G~~G~GKt~la~~l~~~l 98 (364)
..+++.|++|+|||+++..+...-
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 348999999999999999998753
No 223
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=96.15 E-value=0.072 Score=41.49 Aligned_cols=23 Identities=22% Similarity=0.486 Sum_probs=20.3
Q ss_pred cEEEeCCCCccHHHHHHHHHHHH
Q 017884 76 HLLLYGPPGTGKTSTILAVARKL 98 (364)
Q Consensus 76 ~lll~G~~G~GKt~la~~l~~~l 98 (364)
.+++.|++|+|||+++..+...-
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 37999999999999999998753
No 224
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.15 E-value=0.0031 Score=52.46 Aligned_cols=30 Identities=13% Similarity=0.175 Sum_probs=24.7
Q ss_pred cEEEeCCCCccHHHHHHHHHHHHcCCCCCC
Q 017884 76 HLLLYGPPGTGKTSTILAVARKLYGAQYHN 105 (364)
Q Consensus 76 ~lll~G~~G~GKt~la~~l~~~l~~~~~~~ 105 (364)
.++|.|++|+||||+++.+++.+...+...
T Consensus 12 ~I~l~G~~GsGKST~~~~L~~~l~~~~~~~ 41 (212)
T 2wwf_A 12 FIVFEGLDRSGKSTQSKLLVEYLKNNNVEV 41 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCcE
Confidence 379999999999999999999875444433
No 225
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.14 E-value=0.0034 Score=50.08 Aligned_cols=22 Identities=27% Similarity=0.345 Sum_probs=21.0
Q ss_pred EEEeCCCCccHHHHHHHHHHHH
Q 017884 77 LLLYGPPGTGKTSTILAVARKL 98 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l 98 (364)
++|.|++|+||||+++.+++.+
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 3 IYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEESCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999999987
No 226
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.13 E-value=0.0033 Score=51.83 Aligned_cols=23 Identities=26% Similarity=0.593 Sum_probs=21.4
Q ss_pred EEEeCCCCccHHHHHHHHHHHHc
Q 017884 77 LLLYGPPGTGKTSTILAVARKLY 99 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l~ 99 (364)
++|.|++|+||||+++.+++.+.
T Consensus 3 I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 3 IAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEECCCccCHHHHHHHHHHhcC
Confidence 68999999999999999999873
No 227
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=96.11 E-value=0.064 Score=50.82 Aligned_cols=33 Identities=21% Similarity=0.350 Sum_probs=25.6
Q ss_pred EEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEE
Q 017884 77 LLLYGPPGTGKTSTILAVARKLYGAQYHNMILE 109 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~ 109 (364)
+.|.|++|+||||++..++..+...+....++.
T Consensus 104 I~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd 136 (504)
T 2j37_W 104 IMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLIC 136 (504)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEe
Confidence 789999999999999999988765444433333
No 228
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.11 E-value=0.003 Score=51.90 Aligned_cols=23 Identities=26% Similarity=0.534 Sum_probs=21.7
Q ss_pred cEEEeCCCCccHHHHHHHHHHHH
Q 017884 76 HLLLYGPPGTGKTSTILAVARKL 98 (364)
Q Consensus 76 ~lll~G~~G~GKt~la~~l~~~l 98 (364)
.++|.|++|+||||+++.+++.+
T Consensus 14 ~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 14 IIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999987
No 229
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.11 E-value=0.0042 Score=52.69 Aligned_cols=24 Identities=33% Similarity=0.678 Sum_probs=22.1
Q ss_pred CcEEEeCCCCccHHHHHHHHHHHH
Q 017884 75 PHLLLYGPPGTGKTSTILAVARKL 98 (364)
Q Consensus 75 ~~lll~G~~G~GKt~la~~l~~~l 98 (364)
..++|.|++|+||||+++.|++.+
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 348999999999999999999997
No 230
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.10 E-value=0.0031 Score=52.94 Aligned_cols=24 Identities=29% Similarity=0.603 Sum_probs=22.0
Q ss_pred CcEEEeCCCCccHHHHHHHHHHHH
Q 017884 75 PHLLLYGPPGTGKTSTILAVARKL 98 (364)
Q Consensus 75 ~~lll~G~~G~GKt~la~~l~~~l 98 (364)
..++|.|+||+||||+++.+++.+
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 348999999999999999999987
No 231
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.09 E-value=0.0023 Score=51.88 Aligned_cols=23 Identities=35% Similarity=0.564 Sum_probs=17.4
Q ss_pred cEEEeCCCCccHHHHHHHHHHHH
Q 017884 76 HLLLYGPPGTGKTSTILAVARKL 98 (364)
Q Consensus 76 ~lll~G~~G~GKt~la~~l~~~l 98 (364)
.++|.|++|+||||+++.+++.+
T Consensus 7 ~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 7 IIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp EEEEECCC----CHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 47999999999999999999986
No 232
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.08 E-value=0.0037 Score=52.43 Aligned_cols=22 Identities=27% Similarity=0.634 Sum_probs=20.8
Q ss_pred EEEeCCCCccHHHHHHHHHHHH
Q 017884 77 LLLYGPPGTGKTSTILAVARKL 98 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l 98 (364)
++|.||||+||+|.++.|++.+
T Consensus 32 I~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 32 IFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp EEEECCTTCCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6889999999999999999987
No 233
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=96.08 E-value=0.016 Score=48.90 Aligned_cols=39 Identities=21% Similarity=0.378 Sum_probs=24.4
Q ss_pred ceEEEEEeCCCCCCHH--HHHHHHHHHHHhccCccEEEEee
Q 017884 141 SVKLVLLDEADAMTKD--AQFALRRVIEKYTKNTRFALICN 179 (364)
Q Consensus 141 ~~~viiiDe~~~l~~~--~~~~L~~~le~~~~~~~~Il~~~ 179 (364)
..+++|+||+|.+... ....+..++...+....+++.|.
T Consensus 166 ~~~~lViDEah~~~~~~~~~~~~~~i~~~~~~~~~~l~lSA 206 (230)
T 2oxc_A 166 SIRLFILDEADKLLEEGSFQEQINWIYSSLPASKQMLAVSA 206 (230)
T ss_dssp GCCEEEESSHHHHHSTTSSHHHHHHHHHHSCSSCEEEEEES
T ss_pred cCCEEEeCCchHhhcCcchHHHHHHHHHhCCCCCeEEEEEe
Confidence 3569999999987432 24445555565555666655553
No 234
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.07 E-value=0.0027 Score=51.87 Aligned_cols=21 Identities=48% Similarity=0.710 Sum_probs=19.8
Q ss_pred EEEeCCCCccHHHHHHHHHHH
Q 017884 77 LLLYGPPGTGKTSTILAVARK 97 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~ 97 (364)
++|.||+|+||||+++.++..
T Consensus 12 i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 12 LLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEECTTSCHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 799999999999999999876
No 235
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=96.07 E-value=0.08 Score=41.38 Aligned_cols=22 Identities=23% Similarity=0.424 Sum_probs=19.9
Q ss_pred EEEeCCCCccHHHHHHHHHHHH
Q 017884 77 LLLYGPPGTGKTSTILAVARKL 98 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l 98 (364)
+++.|++|+|||+++..+...-
T Consensus 7 i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 7 VIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHhCc
Confidence 8999999999999999998753
No 236
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.05 E-value=0.0037 Score=52.07 Aligned_cols=28 Identities=21% Similarity=0.254 Sum_probs=23.8
Q ss_pred cEEEeCCCCccHHHHHHHHHHHHcCCCC
Q 017884 76 HLLLYGPPGTGKTSTILAVARKLYGAQY 103 (364)
Q Consensus 76 ~lll~G~~G~GKt~la~~l~~~l~~~~~ 103 (364)
.++|.|++|+||||+++.+++.+...+.
T Consensus 11 ~I~l~G~~GsGKsT~~~~L~~~l~~~~~ 38 (215)
T 1nn5_A 11 LIVLEGVDRAGKSTQSRKLVEALCAAGH 38 (215)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCC
Confidence 3799999999999999999998754433
No 237
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=96.05 E-value=0.043 Score=43.19 Aligned_cols=22 Identities=27% Similarity=0.456 Sum_probs=20.1
Q ss_pred EEEeCCCCccHHHHHHHHHHHH
Q 017884 77 LLLYGPPGTGKTSTILAVARKL 98 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l 98 (364)
+++.|++|+|||++++.+...-
T Consensus 9 i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 9 VCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEECcCCCCHHHHHHHHHcCC
Confidence 7999999999999999998764
No 238
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.03 E-value=0.0033 Score=53.07 Aligned_cols=24 Identities=21% Similarity=0.499 Sum_probs=21.8
Q ss_pred CcEEEeCCCCccHHHHHHHHHHHH
Q 017884 75 PHLLLYGPPGTGKTSTILAVARKL 98 (364)
Q Consensus 75 ~~lll~G~~G~GKt~la~~l~~~l 98 (364)
..++|.|++|+||||+++.+++.+
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 348999999999999999999986
No 239
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=96.03 E-value=0.0044 Score=51.86 Aligned_cols=45 Identities=18% Similarity=0.240 Sum_probs=36.1
Q ss_pred hhccHHHHHHHHHHHhcCCCCcEEEeCCCCccHHHHHHHHHHHHc
Q 017884 55 VAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLY 99 (364)
Q Consensus 55 ~vg~~~~~~~l~~~~~~~~~~~lll~G~~G~GKt~la~~l~~~l~ 99 (364)
+-.+.+....++........+.+++.|++|+|||+++..++..+.
T Consensus 11 l~~~~~~~~~~~~~~~~~~~~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 11 LAENKRLAEKNREALRESGTVAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp CHHHHHHHHHHHHHHHHHTCEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred HhhcHHHHHHHHHhhcccCceEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 344566777777777666666789999999999999999998864
No 240
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.03 E-value=0.0034 Score=51.20 Aligned_cols=22 Identities=27% Similarity=0.671 Sum_probs=21.0
Q ss_pred EEEeCCCCccHHHHHHHHHHHH
Q 017884 77 LLLYGPPGTGKTSTILAVARKL 98 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l 98 (364)
++|.|++|+||||+++.+++.+
T Consensus 9 I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 9 VFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7999999999999999999987
No 241
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=96.02 E-value=0.011 Score=49.62 Aligned_cols=43 Identities=21% Similarity=0.315 Sum_probs=34.3
Q ss_pred cHHHHHHHHHHHhcCCCCcEEEeCCCCccHHHHHHHHHHHHcC
Q 017884 58 HRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYG 100 (364)
Q Consensus 58 ~~~~~~~l~~~~~~~~~~~lll~G~~G~GKt~la~~l~~~l~~ 100 (364)
+++....++........+.+++.|.+|+|||+++..++.....
T Consensus 22 ~~~~a~~~r~~~~~~~~~~i~ivG~~gvGKTtl~~~l~~~~~~ 64 (226)
T 2hf9_A 22 NKRLADKNRKLLNKHGVVAFDFMGAIGSGKTLLIEKLIDNLKD 64 (226)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEESTTSSHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHhCCCeEEEEEcCCCCCHHHHHHHHHHHhcc
Confidence 4556667777776666666899999999999999999998754
No 242
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.02 E-value=0.044 Score=44.41 Aligned_cols=22 Identities=36% Similarity=0.505 Sum_probs=20.4
Q ss_pred EEEeCCCCccHHHHHHHHHHHH
Q 017884 77 LLLYGPPGTGKTSTILAVARKL 98 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l 98 (364)
++|.|++|+|||+++..+...-
T Consensus 26 i~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 26 LLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEECCCCcCHHHHHHHHhcCC
Confidence 8999999999999999998864
No 243
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=96.01 E-value=0.01 Score=51.36 Aligned_cols=38 Identities=18% Similarity=0.322 Sum_probs=24.5
Q ss_pred ceEEEEEeCCCCCCHH-HHHHHHHHHHHhccCccEEEEe
Q 017884 141 SVKLVLLDEADAMTKD-AQFALRRVIEKYTKNTRFALIC 178 (364)
Q Consensus 141 ~~~viiiDe~~~l~~~-~~~~L~~~le~~~~~~~~Il~~ 178 (364)
..++|||||+|.+... ....+..++...+..+.+++.|
T Consensus 201 ~l~~lViDEah~l~~~~~~~~l~~i~~~~~~~~q~l~~S 239 (262)
T 3ly5_A 201 NLQCLVIDEADRILDVGFEEELKQIIKLLPTRRQTMLFS 239 (262)
T ss_dssp TCCEEEECSHHHHHHTTCHHHHHHHHHHSCSSSEEEEEC
T ss_pred cCCEEEEcChHHHhhhhHHHHHHHHHHhCCCCCeEEEEE
Confidence 4679999999987543 2344555566555566665555
No 244
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.01 E-value=0.0092 Score=52.45 Aligned_cols=23 Identities=30% Similarity=0.644 Sum_probs=21.4
Q ss_pred EEEeCCCCccHHHHHHHHHHHHc
Q 017884 77 LLLYGPPGTGKTSTILAVARKLY 99 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l~ 99 (364)
+.|.|++|+||||+++.++..+.
T Consensus 34 i~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 34 IFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhh
Confidence 69999999999999999999875
No 245
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.00 E-value=0.0041 Score=50.81 Aligned_cols=23 Identities=26% Similarity=0.329 Sum_probs=21.3
Q ss_pred EEEeCCCCccHHHHHHHHHHHHc
Q 017884 77 LLLYGPPGTGKTSTILAVARKLY 99 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l~ 99 (364)
++|.|++|+||||+++.+++.+.
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~ 25 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQAKKLYEYLK 25 (195)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 68999999999999999999874
No 246
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=96.00 E-value=0.011 Score=53.50 Aligned_cols=42 Identities=17% Similarity=0.344 Sum_probs=31.5
Q ss_pred ceEEEEEeCC-CCCCHHHHHHHHHHHHHhcc--CccEEEEeeccc
Q 017884 141 SVKLVLLDEA-DAMTKDAQFALRRVIEKYTK--NTRFALICNQVN 182 (364)
Q Consensus 141 ~~~viiiDe~-~~l~~~~~~~L~~~le~~~~--~~~~Il~~~~~~ 182 (364)
+++++++||. ..|.+..+..+++++.+... ...+|++|....
T Consensus 181 ~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~ 225 (366)
T 3tui_C 181 NPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMD 225 (366)
T ss_dssp CCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHH
T ss_pred CCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH
Confidence 6889999996 55667788888888887642 556788886554
No 247
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.99 E-value=0.0042 Score=50.92 Aligned_cols=25 Identities=28% Similarity=0.393 Sum_probs=22.2
Q ss_pred EEEeCCCCccHHHHHHHHHHHHcCC
Q 017884 77 LLLYGPPGTGKTSTILAVARKLYGA 101 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l~~~ 101 (364)
+.|.|++|+||||+++.+++.+...
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~ 27 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLEKR 27 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC
Confidence 6899999999999999999987443
No 248
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=95.96 E-value=0.067 Score=47.91 Aligned_cols=35 Identities=14% Similarity=0.251 Sum_probs=26.3
Q ss_pred EEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCC
Q 017884 77 LLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNAS 113 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~ 113 (364)
++|.|+||+|||+++..++..+... ...+..++..
T Consensus 49 iiIaG~pG~GKTt~al~ia~~~a~~--g~~Vl~fSlE 83 (338)
T 4a1f_A 49 VIIGARPSMGKTSLMMNMVLSALND--DRGVAVFSLE 83 (338)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHT--TCEEEEEESS
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHc--CCeEEEEeCC
Confidence 7999999999999999998876543 2344455543
No 249
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=95.95 E-value=0.063 Score=43.29 Aligned_cols=22 Identities=23% Similarity=0.499 Sum_probs=20.1
Q ss_pred EEEeCCCCccHHHHHHHHHHHH
Q 017884 77 LLLYGPPGTGKTSTILAVARKL 98 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l 98 (364)
+++.|++|+|||+++..+...-
T Consensus 24 i~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 24 LVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECcCCCCHHHHHHHHHcCC
Confidence 8999999999999999998753
No 250
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=95.95 E-value=0.0051 Score=51.20 Aligned_cols=23 Identities=35% Similarity=0.514 Sum_probs=21.1
Q ss_pred cEEEeCCCCccHHHHHHHHHHHH
Q 017884 76 HLLLYGPPGTGKTSTILAVARKL 98 (364)
Q Consensus 76 ~lll~G~~G~GKt~la~~l~~~l 98 (364)
.++|.||+|+||||+++.++..+
T Consensus 10 ~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 10 LIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHHST
T ss_pred EEEEECcCCCCHHHHHHHHHhhC
Confidence 37999999999999999999876
No 251
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=95.94 E-value=0.0046 Score=52.12 Aligned_cols=22 Identities=36% Similarity=0.659 Sum_probs=20.9
Q ss_pred EEEeCCCCccHHHHHHHHHHHH
Q 017884 77 LLLYGPPGTGKTSTILAVARKL 98 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l 98 (364)
++|.|++|+||||+++.+++.+
T Consensus 3 I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 3 ILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6899999999999999999987
No 252
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=95.93 E-value=0.015 Score=55.54 Aligned_cols=39 Identities=28% Similarity=0.369 Sum_probs=25.8
Q ss_pred ceEEEEEeCCCCCCH--HHHHHHHHHHHHhccCccEEEEee
Q 017884 141 SVKLVLLDEADAMTK--DAQFALRRVIEKYTKNTRFALICN 179 (364)
Q Consensus 141 ~~~viiiDe~~~l~~--~~~~~L~~~le~~~~~~~~Il~~~ 179 (364)
..++|||||+|.+.. .....+..++...+....+|+.|.
T Consensus 259 ~~~lIIiDEaH~~~~~~~~~~~~~~i~~~~~~~~~~i~lSA 299 (508)
T 3fho_A 259 DIKVFVLDEADNMLDQQGLGDQSMRIKHLLPRNTQIVLFSA 299 (508)
T ss_dssp TCCEEEECCHHHHTTC--CHHHHHHHHHHSCTTCEEEEEES
T ss_pred CCCEEEEechhhhcccCCcHHHHHHHHHhCCcCCeEEEEeC
Confidence 467999999998864 233445555555566677666664
No 253
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=95.90 E-value=0.0042 Score=51.94 Aligned_cols=22 Identities=27% Similarity=0.499 Sum_probs=20.9
Q ss_pred EEEeCCCCccHHHHHHHHHHHH
Q 017884 77 LLLYGPPGTGKTSTILAVARKL 98 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l 98 (364)
++|.|++|+||||+++.+++.+
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 3 IILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999999987
No 254
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=95.90 E-value=0.085 Score=41.83 Aligned_cols=23 Identities=22% Similarity=0.416 Sum_probs=20.5
Q ss_pred cEEEeCCCCccHHHHHHHHHHHH
Q 017884 76 HLLLYGPPGTGKTSTILAVARKL 98 (364)
Q Consensus 76 ~lll~G~~G~GKt~la~~l~~~l 98 (364)
.+++.|++|+|||+++..+...-
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 38999999999999999998754
No 255
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=95.90 E-value=0.09 Score=49.11 Aligned_cols=48 Identities=19% Similarity=0.170 Sum_probs=31.9
Q ss_pred HHHHHHhcCCCCc--EEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCC
Q 017884 64 TIDRLTSENRLPH--LLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNAS 113 (364)
Q Consensus 64 ~l~~~~~~~~~~~--lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~ 113 (364)
.|...+ .|-.+. ++|.|+||+|||+++..++....... +..++.++..
T Consensus 189 ~LD~~l-gGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~-g~~vl~~slE 238 (444)
T 2q6t_A 189 ELDQLI-GTLGPGSLNIIAARPAMGKTAFALTIAQNAALKE-GVGVGIYSLE 238 (444)
T ss_dssp HHHHHH-CCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTT-CCCEEEEESS
T ss_pred hhhhhc-CCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhC-CCeEEEEECC
Confidence 344455 443333 69999999999999999998764321 2345555554
No 256
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.90 E-value=0.0042 Score=51.33 Aligned_cols=22 Identities=23% Similarity=0.567 Sum_probs=20.8
Q ss_pred EEEeCCCCccHHHHHHHHHHHH
Q 017884 77 LLLYGPPGTGKTSTILAVARKL 98 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l 98 (364)
++|.|++|+||||+++.+++.+
T Consensus 18 I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 18 IFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp EEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7999999999999999999886
No 257
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=95.89 E-value=0.0088 Score=48.26 Aligned_cols=38 Identities=21% Similarity=0.281 Sum_probs=28.4
Q ss_pred CCcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEe
Q 017884 74 LPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELN 111 (364)
Q Consensus 74 ~~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~ 111 (364)
.+.+.|.|++|+||||++..+...+...+.....+...
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~ 43 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHT 43 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeC
Confidence 35589999999999999999999875444444444443
No 258
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=95.87 E-value=0.068 Score=53.61 Aligned_cols=23 Identities=26% Similarity=0.398 Sum_probs=18.3
Q ss_pred CcEEEeCCCCccHHHHHHHHHHH
Q 017884 75 PHLLLYGPPGTGKTSTILAVARK 97 (364)
Q Consensus 75 ~~lll~G~~G~GKt~la~~l~~~ 97 (364)
..+++.||+|+|||+++-.+...
T Consensus 110 ~~vii~gpTGSGKTtllp~ll~~ 132 (773)
T 2xau_A 110 QIMVFVGETGSGKTTQIPQFVLF 132 (773)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 35899999999999976666443
No 259
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=95.86 E-value=0.005 Score=52.68 Aligned_cols=24 Identities=29% Similarity=0.671 Sum_probs=21.9
Q ss_pred CcEEEeCCCCccHHHHHHHHHHHH
Q 017884 75 PHLLLYGPPGTGKTSTILAVARKL 98 (364)
Q Consensus 75 ~~lll~G~~G~GKt~la~~l~~~l 98 (364)
..+.|.||+|+||||+++.+++.+
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 348999999999999999999887
No 260
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=95.86 E-value=0.018 Score=45.34 Aligned_cols=22 Identities=23% Similarity=0.431 Sum_probs=20.1
Q ss_pred EEEeCCCCccHHHHHHHHHHHH
Q 017884 77 LLLYGPPGTGKTSTILAVARKL 98 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l 98 (364)
+++.|++|+|||+++..+....
T Consensus 8 i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 8 MVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEECcCCCCHHHHHHHHHcCC
Confidence 7999999999999999998754
No 261
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=95.85 E-value=0.0052 Score=51.72 Aligned_cols=23 Identities=35% Similarity=0.543 Sum_probs=21.4
Q ss_pred cEEEeCCCCccHHHHHHHHHHHH
Q 017884 76 HLLLYGPPGTGKTSTILAVARKL 98 (364)
Q Consensus 76 ~lll~G~~G~GKt~la~~l~~~l 98 (364)
.+.|.||+|+||||+++.+++.+
T Consensus 7 ~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 7 VITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47999999999999999999986
No 262
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=95.83 E-value=0.0048 Score=50.34 Aligned_cols=22 Identities=36% Similarity=0.688 Sum_probs=19.8
Q ss_pred EEEeCCCCccHHHHHHHHHHHH
Q 017884 77 LLLYGPPGTGKTSTILAVARKL 98 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l 98 (364)
++|.||+|+||||+++.++...
T Consensus 5 i~l~G~~GaGKSTl~~~L~~~~ 26 (189)
T 2bdt_A 5 YIITGPAGVGKSTTCKRLAAQL 26 (189)
T ss_dssp EEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEECCCCCcHHHHHHHHhccc
Confidence 6899999999999999998753
No 263
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=95.83 E-value=0.051 Score=45.52 Aligned_cols=39 Identities=18% Similarity=0.346 Sum_probs=26.2
Q ss_pred ceEEEEEeCCCCCCHHH-HHHHHHHHHHhccCccEEEEee
Q 017884 141 SVKLVLLDEADAMTKDA-QFALRRVIEKYTKNTRFALICN 179 (364)
Q Consensus 141 ~~~viiiDe~~~l~~~~-~~~L~~~le~~~~~~~~Il~~~ 179 (364)
..+++|+||+|.+.... ...+..++...+.+..+++.|.
T Consensus 167 ~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SA 206 (228)
T 3iuy_A 167 SITYLVIDEADKMLDMEFEPQIRKILLDVRPDRQTVMTSA 206 (228)
T ss_dssp TCCEEEECCHHHHHHTTCHHHHHHHHHHSCSSCEEEEEES
T ss_pred cceEEEEECHHHHhccchHHHHHHHHHhCCcCCeEEEEEe
Confidence 46799999999875432 4455566666666677666653
No 264
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.83 E-value=0.026 Score=49.69 Aligned_cols=31 Identities=26% Similarity=0.400 Sum_probs=24.5
Q ss_pred EEEeCCCCccHHHHHHHHHHHHcC-CCCCCcE
Q 017884 77 LLLYGPPGTGKTSTILAVARKLYG-AQYHNMI 107 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l~~-~~~~~~~ 107 (364)
+.|.|++|+||||++..++..+.. .+....+
T Consensus 108 i~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~l 139 (296)
T 2px0_A 108 IVLFGSTGAGKTTTLAKLAAISMLEKHKKIAF 139 (296)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTTCCCEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhcCCEEEE
Confidence 799999999999999999988752 4433333
No 265
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=95.83 E-value=0.032 Score=45.04 Aligned_cols=22 Identities=32% Similarity=0.468 Sum_probs=19.9
Q ss_pred EEEeCCCCccHHHHHHHHHHHH
Q 017884 77 LLLYGPPGTGKTSTILAVARKL 98 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l 98 (364)
+++.|++|+|||+++..+...-
T Consensus 14 i~v~G~~~~GKSsli~~l~~~~ 35 (195)
T 3bc1_A 14 FLALGDSGVGKTSVLYQYTDGK 35 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 8999999999999999998743
No 266
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=95.82 E-value=0.024 Score=46.17 Aligned_cols=23 Identities=26% Similarity=0.518 Sum_probs=20.6
Q ss_pred cEEEeCCCCccHHHHHHHHHHHH
Q 017884 76 HLLLYGPPGTGKTSTILAVARKL 98 (364)
Q Consensus 76 ~lll~G~~G~GKt~la~~l~~~l 98 (364)
.+++.|++|+|||+++.++...-
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 38999999999999999998763
No 267
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=95.82 E-value=0.061 Score=41.90 Aligned_cols=23 Identities=26% Similarity=0.502 Sum_probs=20.5
Q ss_pred CcEEEeCCCCccHHHHHHHHHHH
Q 017884 75 PHLLLYGPPGTGKTSTILAVARK 97 (364)
Q Consensus 75 ~~lll~G~~G~GKt~la~~l~~~ 97 (364)
+.+++.|++|+|||+++..+...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 45899999999999999999865
No 268
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=95.81 E-value=0.0053 Score=50.68 Aligned_cols=22 Identities=36% Similarity=0.699 Sum_probs=20.5
Q ss_pred EEEeCCCCccHHHHHHHHHHHH
Q 017884 77 LLLYGPPGTGKTSTILAVARKL 98 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l 98 (364)
+.|.||+|+||||+++.++..+
T Consensus 10 i~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 10 FIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp EEEECCTTSCHHHHHHHHHHHS
T ss_pred EEEECcCCCCHHHHHHHHHhhC
Confidence 7999999999999999999874
No 269
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=95.78 E-value=0.041 Score=50.09 Aligned_cols=39 Identities=18% Similarity=0.356 Sum_probs=26.7
Q ss_pred ceEEEEEeCCCCCCH--HHHHHHHHHHHHhccCccEEEEee
Q 017884 141 SVKLVLLDEADAMTK--DAQFALRRVIEKYTKNTRFALICN 179 (364)
Q Consensus 141 ~~~viiiDe~~~l~~--~~~~~L~~~le~~~~~~~~Il~~~ 179 (364)
..++||+||+|.+.. .....+..++...+....+++.|.
T Consensus 152 ~~~~vViDEaH~~~~~~~~~~~~~~~~~~~~~~~~~i~~SA 192 (391)
T 1xti_A 152 HIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSA 192 (391)
T ss_dssp TCSEEEECSHHHHTSSHHHHHHHHHHHHTSCSSSEEEEEES
T ss_pred ccCEEEEeCHHHHhhccchHHHHHHHHhhCCCCceEEEEEe
Confidence 467899999998864 444556666666555666666653
No 270
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=95.78 E-value=0.02 Score=51.15 Aligned_cols=38 Identities=13% Similarity=0.187 Sum_probs=28.0
Q ss_pred EEEeCCCCccHHHHHHHHHHHHcCC----CCCCcEEEEeCCC
Q 017884 77 LLLYGPPGTGKTSTILAVARKLYGA----QYHNMILELNASD 114 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l~~~----~~~~~~~~~~~~~ 114 (364)
++|+||||+|||+++..++...... +....+++++...
T Consensus 110 ~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~ 151 (324)
T 2z43_A 110 TEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEG 151 (324)
T ss_dssp EEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred EEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 7999999999999999999875332 1134566666654
No 271
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=95.77 E-value=0.008 Score=50.07 Aligned_cols=24 Identities=21% Similarity=0.416 Sum_probs=21.9
Q ss_pred cEEEeCCCCccHHHHHHHHHHHHc
Q 017884 76 HLLLYGPPGTGKTSTILAVARKLY 99 (364)
Q Consensus 76 ~lll~G~~G~GKt~la~~l~~~l~ 99 (364)
.++|.|++|+||||+++.++..+.
T Consensus 27 ~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 27 TIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 379999999999999999999874
No 272
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=95.77 E-value=0.021 Score=47.86 Aligned_cols=23 Identities=26% Similarity=0.338 Sum_probs=20.9
Q ss_pred EEEeCCCCccHHHHHHHHHHHHc
Q 017884 77 LLLYGPPGTGKTSTILAVARKLY 99 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l~ 99 (364)
+.|.||+|+||||+++.++..+.
T Consensus 28 ~~l~G~nGsGKSTll~~l~g~~~ 50 (231)
T 4a74_A 28 TEVFGEFGSGKTQLAHTLAVMVQ 50 (231)
T ss_dssp EEEEESTTSSHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHHh
Confidence 79999999999999999998653
No 273
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=95.77 E-value=0.0052 Score=50.12 Aligned_cols=22 Identities=27% Similarity=0.623 Sum_probs=20.6
Q ss_pred EEEeCCCCccHHHHHHHHHHHH
Q 017884 77 LLLYGPPGTGKTSTILAVARKL 98 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l 98 (364)
+.|.||+|+||||+++.++..+
T Consensus 4 i~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHhhC
Confidence 7899999999999999999876
No 274
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=95.77 E-value=0.35 Score=38.78 Aligned_cols=23 Identities=22% Similarity=0.345 Sum_probs=20.5
Q ss_pred CcEEEeCCCCccHHHHHHHHHHH
Q 017884 75 PHLLLYGPPGTGKTSTILAVARK 97 (364)
Q Consensus 75 ~~lll~G~~G~GKt~la~~l~~~ 97 (364)
+.+++.|++|+|||+++..+...
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 45899999999999999998765
No 275
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=95.76 E-value=0.011 Score=50.63 Aligned_cols=24 Identities=38% Similarity=0.469 Sum_probs=22.4
Q ss_pred CcEEEeCCCCccHHHHHHHHHHHH
Q 017884 75 PHLLLYGPPGTGKTSTILAVARKL 98 (364)
Q Consensus 75 ~~lll~G~~G~GKt~la~~l~~~l 98 (364)
..+.|.|++|+||||+++.++..+
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHhc
Confidence 459999999999999999999987
No 276
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=95.75 E-value=0.11 Score=42.27 Aligned_cols=23 Identities=22% Similarity=0.414 Sum_probs=20.3
Q ss_pred cEEEeCCCCccHHHHHHHHHHHH
Q 017884 76 HLLLYGPPGTGKTSTILAVARKL 98 (364)
Q Consensus 76 ~lll~G~~G~GKt~la~~l~~~l 98 (364)
.++|.|++|+|||+++..+...-
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 38999999999999999998653
No 277
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.75 E-value=0.0062 Score=50.26 Aligned_cols=23 Identities=26% Similarity=0.559 Sum_probs=21.2
Q ss_pred cEEEeCCCCccHHHHHHHHHHHH
Q 017884 76 HLLLYGPPGTGKTSTILAVARKL 98 (364)
Q Consensus 76 ~lll~G~~G~GKt~la~~l~~~l 98 (364)
.+.|.||+|+||||+++.+...+
T Consensus 6 ~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 48999999999999999999876
No 278
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=95.74 E-value=0.0094 Score=55.49 Aligned_cols=26 Identities=38% Similarity=0.510 Sum_probs=22.5
Q ss_pred cEEEeCCCCccHHHHHHHHHHHHcCC
Q 017884 76 HLLLYGPPGTGKTSTILAVARKLYGA 101 (364)
Q Consensus 76 ~lll~G~~G~GKt~la~~l~~~l~~~ 101 (364)
.+++.|++|+||||++..++..+...
T Consensus 101 vI~ivG~~GvGKTTla~~La~~l~~~ 126 (432)
T 2v3c_C 101 VILLVGIQGSGKTTTAAKLARYIQKR 126 (432)
T ss_dssp CEEEECCSSSSTTHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 38999999999999999999887533
No 279
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=95.73 E-value=0.0055 Score=50.64 Aligned_cols=23 Identities=26% Similarity=0.443 Sum_probs=21.0
Q ss_pred cEEEeCCCCccHHHHHHHHHHHH
Q 017884 76 HLLLYGPPGTGKTSTILAVARKL 98 (364)
Q Consensus 76 ~lll~G~~G~GKt~la~~l~~~l 98 (364)
.+.|.||+|+||||+++.++..+
T Consensus 8 ~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 8 LIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp EEEEECSTTSCHHHHHHHHHHCT
T ss_pred EEEEECCCCCCHHHHHHHHHHhh
Confidence 37999999999999999998876
No 280
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.73 E-value=0.0063 Score=50.13 Aligned_cols=22 Identities=27% Similarity=0.443 Sum_probs=20.6
Q ss_pred EEEeCCCCccHHHHHHHHHHHH
Q 017884 77 LLLYGPPGTGKTSTILAVARKL 98 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l 98 (364)
++|.||+|+||||+++.+++..
T Consensus 22 ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 22 LVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECcCCCCHHHHHHHHHhhC
Confidence 7999999999999999999875
No 281
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=95.73 E-value=0.19 Score=40.06 Aligned_cols=22 Identities=23% Similarity=0.424 Sum_probs=20.0
Q ss_pred EEEeCCCCccHHHHHHHHHHHH
Q 017884 77 LLLYGPPGTGKTSTILAVARKL 98 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l 98 (364)
+++.|++|+|||+++..+...-
T Consensus 21 i~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 21 VIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHhhCC
Confidence 8999999999999999998653
No 282
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=95.71 E-value=0.0046 Score=51.01 Aligned_cols=23 Identities=17% Similarity=0.391 Sum_probs=21.3
Q ss_pred cEEEeCCCCccHHHHHHHHHHHH
Q 017884 76 HLLLYGPPGTGKTSTILAVARKL 98 (364)
Q Consensus 76 ~lll~G~~G~GKt~la~~l~~~l 98 (364)
.++|.|++|+||||+++.+++.+
T Consensus 6 ~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 6 LIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp EEEEECCTTSSHHHHHHHHHHTS
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 37999999999999999999986
No 283
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=95.70 E-value=0.03 Score=45.39 Aligned_cols=22 Identities=32% Similarity=0.594 Sum_probs=19.2
Q ss_pred EEEeCCCCccHHHHHHHHHHHH
Q 017884 77 LLLYGPPGTGKTSTILAVARKL 98 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l 98 (364)
+++.|++|+|||++++.+....
T Consensus 17 i~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 17 IVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEECSTTSSHHHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHHhhc
Confidence 8999999999999998776643
No 284
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=95.69 E-value=0.13 Score=41.80 Aligned_cols=22 Identities=36% Similarity=0.440 Sum_probs=19.2
Q ss_pred cEEEeCCCCccHHHHHHHHHHH
Q 017884 76 HLLLYGPPGTGKTSTILAVARK 97 (364)
Q Consensus 76 ~lll~G~~G~GKt~la~~l~~~ 97 (364)
.+++.|++|+|||++++.+...
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~~ 43 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFHK 43 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 4899999999999999877653
No 285
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=95.68 E-value=0.0079 Score=50.60 Aligned_cols=39 Identities=23% Similarity=0.239 Sum_probs=24.4
Q ss_pred HHHHHHHHhcCCCCcEEEeCCCCccHHHHHHHHHHHHcC
Q 017884 62 VDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYG 100 (364)
Q Consensus 62 ~~~l~~~~~~~~~~~lll~G~~G~GKt~la~~l~~~l~~ 100 (364)
+..+.......+...+.|.|++|+||||+++.+++.+..
T Consensus 9 ~~~~~~~~~~~~~~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 9 MGTLEAQTQGPGSMFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp ----------CCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred cccccccccCCCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 344555555444334799999999999999999999864
No 286
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=95.67 E-value=0.013 Score=50.19 Aligned_cols=39 Identities=15% Similarity=0.345 Sum_probs=23.5
Q ss_pred ceEEEEEeCCCCCCHH-HHHHHHHHHHHhccCccEEEEee
Q 017884 141 SVKLVLLDEADAMTKD-AQFALRRVIEKYTKNTRFALICN 179 (364)
Q Consensus 141 ~~~viiiDe~~~l~~~-~~~~L~~~le~~~~~~~~Il~~~ 179 (364)
..++||+||+|.+... ....+..++...+....+++.|.
T Consensus 186 ~~~~lViDEah~l~~~~~~~~l~~i~~~~~~~~~~l~~SA 225 (249)
T 3ber_A 186 ALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLFSA 225 (249)
T ss_dssp TCCEEEECSHHHHHHTTCHHHHHHHHHSSCSSSEEEEEES
T ss_pred ccCEEEEcChhhhhccChHHHHHHHHHhCCCCCeEEEEec
Confidence 3568999999977532 23345555555555555555553
No 287
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=95.65 E-value=0.86 Score=38.59 Aligned_cols=21 Identities=33% Similarity=0.534 Sum_probs=19.2
Q ss_pred EEEeCCCCccHHHHHHHHHHH
Q 017884 77 LLLYGPPGTGKTSTILAVARK 97 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~ 97 (364)
++|.|.+|+|||+++..+...
T Consensus 24 I~lvG~~g~GKSSlin~l~~~ 44 (247)
T 3lxw_A 24 LILVGRTGAGKSATGNSILGQ 44 (247)
T ss_dssp EEEESSTTSSHHHHHHHHHTS
T ss_pred EEEECCCCCcHHHHHHHHhCC
Confidence 899999999999999998754
No 288
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=95.65 E-value=0.054 Score=42.64 Aligned_cols=21 Identities=24% Similarity=0.441 Sum_probs=18.7
Q ss_pred cEEEeCCCCccHHHHHHHHHH
Q 017884 76 HLLLYGPPGTGKTSTILAVAR 96 (364)
Q Consensus 76 ~lll~G~~G~GKt~la~~l~~ 96 (364)
.+++.|++|+|||+++..+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 378999999999999999863
No 289
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=95.65 E-value=0.11 Score=41.72 Aligned_cols=22 Identities=23% Similarity=0.513 Sum_probs=20.0
Q ss_pred EEEeCCCCccHHHHHHHHHHHH
Q 017884 77 LLLYGPPGTGKTSTILAVARKL 98 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l 98 (364)
+++.|++|+|||+++..+...-
T Consensus 7 i~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 7 LVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHHhCC
Confidence 7999999999999999998654
No 290
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=95.64 E-value=0.11 Score=40.74 Aligned_cols=21 Identities=33% Similarity=0.593 Sum_probs=19.5
Q ss_pred EEEeCCCCccHHHHHHHHHHH
Q 017884 77 LLLYGPPGTGKTSTILAVARK 97 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~ 97 (364)
+++.|++|+|||+++.++...
T Consensus 9 i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 9 LVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 799999999999999999864
No 291
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=95.64 E-value=0.0083 Score=49.58 Aligned_cols=40 Identities=13% Similarity=0.164 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHhcCCCCcEEEeCCCCccHHHHHHHHHHHH
Q 017884 59 RDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKL 98 (364)
Q Consensus 59 ~~~~~~l~~~~~~~~~~~lll~G~~G~GKt~la~~l~~~l 98 (364)
+...+.+.........-.+++.|++|+|||+++..+...-
T Consensus 15 ~~~~~~m~~~~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~ 54 (204)
T 4gzl_A 15 VPRGSHMENLYFQGQAIKCVVVGDGAVGKTCLLISYTTNA 54 (204)
T ss_dssp ---------------CEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred ccchhHHHhHhhcCCeEEEEEECcCCCCHHHHHHHHHhCC
Confidence 3444444444444433348999999999999999998653
No 292
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=95.63 E-value=0.061 Score=49.19 Aligned_cols=38 Identities=18% Similarity=0.318 Sum_probs=23.4
Q ss_pred ceEEEEEeCCCCCCHHH-HHHHHHHHHHhccCccEEEEe
Q 017884 141 SVKLVLLDEADAMTKDA-QFALRRVIEKYTKNTRFALIC 178 (364)
Q Consensus 141 ~~~viiiDe~~~l~~~~-~~~L~~~le~~~~~~~~Il~~ 178 (364)
...+||+||+|.+.... ...+..++...+....+++.|
T Consensus 163 ~~~~vIiDEaH~~~~~~~~~~~~~i~~~~~~~~~~i~lS 201 (400)
T 1s2m_A 163 DCSLFIMDEADKMLSRDFKTIIEQILSFLPPTHQSLLFS 201 (400)
T ss_dssp TCCEEEEESHHHHSSHHHHHHHHHHHTTSCSSCEEEEEE
T ss_pred cCCEEEEeCchHhhhhchHHHHHHHHHhCCcCceEEEEE
Confidence 36799999999776543 334444444444455555554
No 293
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=95.61 E-value=0.023 Score=55.25 Aligned_cols=42 Identities=17% Similarity=0.316 Sum_probs=31.6
Q ss_pred ceEEEEEeCCC-CCCHHHHHHHHHHHHHhccCccEEEEeeccc
Q 017884 141 SVKLVLLDEAD-AMTKDAQFALRRVIEKYTKNTRFALICNQVN 182 (364)
Q Consensus 141 ~~~viiiDe~~-~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~ 182 (364)
+++++++||.- .+.......+.+.+.+...+..+|++++...
T Consensus 497 ~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~ 539 (587)
T 3qf4_A 497 KPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIP 539 (587)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHHHSTTCEEEEEESCHH
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHhCCCCEEEEEecChH
Confidence 57899999964 4566777788888887666666788887654
No 294
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=95.60 E-value=0.0078 Score=48.60 Aligned_cols=23 Identities=35% Similarity=0.512 Sum_probs=21.3
Q ss_pred EEEeCCCCccHHHHHHHHHHHHc
Q 017884 77 LLLYGPPGTGKTSTILAVARKLY 99 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l~ 99 (364)
+.|.|++|+||||+++.++..+.
T Consensus 8 i~l~G~~GsGKST~~~~L~~~l~ 30 (179)
T 2pez_A 8 VWLTGLSGAGKTTVSMALEEYLV 30 (179)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHh
Confidence 78999999999999999999874
No 295
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=95.60 E-value=0.069 Score=43.25 Aligned_cols=22 Identities=41% Similarity=0.635 Sum_probs=20.1
Q ss_pred EEEeCCCCccHHHHHHHHHHHH
Q 017884 77 LLLYGPPGTGKTSTILAVARKL 98 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l 98 (364)
+++.|++|+|||+++.++...-
T Consensus 19 i~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 19 LLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECcCCCCHHHHHHHHHcCC
Confidence 8999999999999999998753
No 296
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=95.56 E-value=0.09 Score=49.92 Aligned_cols=38 Identities=18% Similarity=0.128 Sum_probs=26.8
Q ss_pred cHHHHHHHHHHHhcCCCCcEEEeCCCCccHHHHHHHHHHHH
Q 017884 58 HRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKL 98 (364)
Q Consensus 58 ~~~~~~~l~~~~~~~~~~~lll~G~~G~GKt~la~~l~~~l 98 (364)
.+.....+..++.. ...+++||+|+|||..+..++...
T Consensus 115 ~~~Q~~ai~~~~~~---~~~ll~~~tGsGKT~~~~~~~~~~ 152 (510)
T 2oca_A 115 HWYQKDAVFEGLVN---RRRILNLPTSAGRSLIQALLARYY 152 (510)
T ss_dssp CHHHHHHHHHHHHH---SEEEEECCSTTTHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhc---CCcEEEeCCCCCHHHHHHHHHHHH
Confidence 34445555555544 458999999999999987766654
No 297
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=95.55 E-value=0.013 Score=54.34 Aligned_cols=92 Identities=17% Similarity=0.168 Sum_probs=50.2
Q ss_pred EEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCCCChHHHHHHHHHHHh-c-Ccc--------ccCCc----cce
Q 017884 77 LLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFAS-T-QSF--------SFGVK----ASV 142 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~-~~~--------~~~~~----~~~ 142 (364)
.++.|+||+|||+++..++.. ...+-+.+.. ...+.+++.+..... . ... .+... ...
T Consensus 164 ~~I~G~aGsGKTt~I~~~~~~-------~~~lVlTpT~-~aa~~l~~kl~~~~~~~~~~~~V~T~dsfL~~~~~~~~~~~ 235 (446)
T 3vkw_A 164 VLVDGVPGCGKTKEILSRVNF-------EEDLILVPGR-QAAEMIRRRANASGIIVATKDNVRTVDSFLMNYGKGARCQF 235 (446)
T ss_dssp EEEEECTTSCHHHHHHHHCCT-------TTCEEEESCH-HHHHHHHHHHTTTSCCCCCTTTEEEHHHHHHTTTSSCCCCC
T ss_pred EEEEcCCCCCHHHHHHHHhcc-------CCeEEEeCCH-HHHHHHHHHhhhcCccccccceEEEeHHhhcCCCCCCCCcC
Confidence 599999999999999877542 1112223222 122333333221000 0 000 00010 026
Q ss_pred EEEEEeCCCCCCHHHHHHHHHHHHHhccCccEEEEeec
Q 017884 143 KLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQ 180 (364)
Q Consensus 143 ~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~ 180 (364)
.++||||+..+.......++..+ + ...+|++++.
T Consensus 236 d~liiDE~sm~~~~~l~~l~~~~---~-~~~vilvGD~ 269 (446)
T 3vkw_A 236 KRLFIDEGLMLHTGCVNFLVEMS---L-CDIAYVYGDT 269 (446)
T ss_dssp SEEEEETGGGSCHHHHHHHHHHT---T-CSEEEEEECT
T ss_pred CEEEEeCcccCCHHHHHHHHHhC---C-CCEEEEecCc
Confidence 79999999988877766665543 2 3778888853
No 298
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=95.52 E-value=0.02 Score=55.60 Aligned_cols=43 Identities=14% Similarity=0.386 Sum_probs=31.6
Q ss_pred ceEEEEEeCC-CCCCHHHHHHHHHHHHHhccCccEEEEeecccc
Q 017884 141 SVKLVLLDEA-DAMTKDAQFALRRVIEKYTKNTRFALICNQVNK 183 (364)
Q Consensus 141 ~~~viiiDe~-~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~ 183 (364)
+++++++||. ..+.......+.+.+.+...+..+|++++..+.
T Consensus 495 ~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~ 538 (578)
T 4a82_A 495 NPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLST 538 (578)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGG
T ss_pred CCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHH
Confidence 5789999996 445566777788888776656667778876654
No 299
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=95.52 E-value=0.093 Score=46.10 Aligned_cols=26 Identities=35% Similarity=0.428 Sum_probs=22.3
Q ss_pred EEEeCCCCccHHHHHHHHHHHHcCCC
Q 017884 77 LLLYGPPGTGKTSTILAVARKLYGAQ 102 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l~~~~ 102 (364)
+.+.|++|+||||++..++..+...+
T Consensus 101 i~i~g~~G~GKTT~~~~la~~~~~~~ 126 (295)
T 1ls1_A 101 WFLVGLQGSGKTTTAAKLALYYKGKG 126 (295)
T ss_dssp EEEECCTTTTHHHHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 67889999999999999999875443
No 300
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=95.52 E-value=0.11 Score=41.23 Aligned_cols=21 Identities=38% Similarity=0.686 Sum_probs=19.5
Q ss_pred EEEeCCCCccHHHHHHHHHHH
Q 017884 77 LLLYGPPGTGKTSTILAVARK 97 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~ 97 (364)
+++.|++|+|||+++..+...
T Consensus 15 i~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 15 LVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEECCTTSCHHHHHHHHHHC
T ss_pred EEEECcCCCCHHHHHHHHHcC
Confidence 899999999999999999865
No 301
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=95.51 E-value=0.055 Score=52.46 Aligned_cols=42 Identities=21% Similarity=0.470 Sum_probs=30.8
Q ss_pred ceEEEEEeCCC-CCCHHHHHHHHHHHHHhccCccEEEEeeccc
Q 017884 141 SVKLVLLDEAD-AMTKDAQFALRRVIEKYTKNTRFALICNQVN 182 (364)
Q Consensus 141 ~~~viiiDe~~-~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~ 182 (364)
+++++++||.- .+.......+.+.+.+...+..+|++++...
T Consensus 498 ~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~ 540 (582)
T 3b5x_A 498 DAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLS 540 (582)
T ss_pred CCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHH
Confidence 67899999964 4556677778888887655566777887654
No 302
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=95.51 E-value=0.21 Score=52.37 Aligned_cols=40 Identities=18% Similarity=0.205 Sum_probs=28.0
Q ss_pred hccHHHHHHHHHHHhcCCCCcEEEeCCCCccHHHHHHHHH
Q 017884 56 AAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVA 95 (364)
Q Consensus 56 vg~~~~~~~l~~~~~~~~~~~lll~G~~G~GKt~la~~l~ 95 (364)
..|...+..+...+.++...+++++||+|+|||.++...+
T Consensus 606 ~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa 645 (1151)
T 2eyq_A 606 PDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAA 645 (1151)
T ss_dssp HHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHH
Confidence 3455555555555555655579999999999998876444
No 303
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=95.51 E-value=0.051 Score=52.01 Aligned_cols=25 Identities=28% Similarity=0.388 Sum_probs=22.2
Q ss_pred EEEeCCCCccHHHHHHHHHHHHcCC
Q 017884 77 LLLYGPPGTGKTSTILAVARKLYGA 101 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l~~~ 101 (364)
++|.||+|+|||++++.++......
T Consensus 284 ~~i~G~~GsGKSTLl~~l~g~~~~~ 308 (525)
T 1tf7_A 284 ILATGATGTGKTLLVSRFVENACAN 308 (525)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHHTT
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHhC
Confidence 7999999999999999999877543
No 304
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=95.50 E-value=0.059 Score=45.72 Aligned_cols=38 Identities=21% Similarity=0.316 Sum_probs=23.5
Q ss_pred ceEEEEEeCCCCCCH----HHHHHHHHHHHHh-ccCccEEEEe
Q 017884 141 SVKLVLLDEADAMTK----DAQFALRRVIEKY-TKNTRFALIC 178 (364)
Q Consensus 141 ~~~viiiDe~~~l~~----~~~~~L~~~le~~-~~~~~~Il~~ 178 (364)
..+++||||+|.+.. .....+..++... +....+++.|
T Consensus 175 ~~~~lViDEah~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~S 217 (245)
T 3dkp_A 175 SVEWLVVDESDKLFEDGKTGFRDQLASIFLACTSHKVRRAMFS 217 (245)
T ss_dssp TCCEEEESSHHHHHHHC--CHHHHHHHHHHHCCCTTCEEEEEE
T ss_pred cCcEEEEeChHHhcccccccHHHHHHHHHHhcCCCCcEEEEEe
Confidence 367899999999865 2345555555543 2344555544
No 305
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.49 E-value=0.0043 Score=51.64 Aligned_cols=23 Identities=17% Similarity=0.355 Sum_probs=21.4
Q ss_pred EEEeCCCCccHHHHHHHHHHHHc
Q 017884 77 LLLYGPPGTGKTSTILAVARKLY 99 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l~ 99 (364)
+.|.|++|+||||+++.+++.+.
T Consensus 3 I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 3 IAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH
Confidence 68999999999999999999884
No 306
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=95.48 E-value=0.025 Score=52.05 Aligned_cols=39 Identities=28% Similarity=0.434 Sum_probs=26.2
Q ss_pred ceEEEEEeCCCCCCHH-HHHHHHHHHHHhccCccEEEEee
Q 017884 141 SVKLVLLDEADAMTKD-AQFALRRVIEKYTKNTRFALICN 179 (364)
Q Consensus 141 ~~~viiiDe~~~l~~~-~~~~L~~~le~~~~~~~~Il~~~ 179 (364)
..++||+||+|.+... ....+..++...+.+..+|+.|.
T Consensus 183 ~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SA 222 (414)
T 3eiq_A 183 YIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSA 222 (414)
T ss_dssp TCCEEEECSHHHHHHTTTHHHHHHHHTTSCTTCEEEEECS
T ss_pred cCcEEEEECHHHhhccCcHHHHHHHHHhCCCCCeEEEEEE
Confidence 3679999999987533 23455666666666777777663
No 307
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=95.47 E-value=0.024 Score=51.32 Aligned_cols=37 Identities=24% Similarity=0.384 Sum_probs=29.0
Q ss_pred CcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEe
Q 017884 75 PHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELN 111 (364)
Q Consensus 75 ~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~ 111 (364)
+.+.|.|++|+||||++..++..+...+....++..+
T Consensus 80 ~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~D 116 (355)
T 3p32_A 80 HRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVD 116 (355)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecC
Confidence 3489999999999999999999886665555555544
No 308
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=95.45 E-value=0.02 Score=45.73 Aligned_cols=22 Identities=41% Similarity=0.682 Sum_probs=19.3
Q ss_pred cEEEeCCCCccHHHHHHHHHHH
Q 017884 76 HLLLYGPPGTGKTSTILAVARK 97 (364)
Q Consensus 76 ~lll~G~~G~GKt~la~~l~~~ 97 (364)
.+++.|++|+|||+++.++...
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3899999999999999998653
No 309
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.45 E-value=0.0093 Score=50.52 Aligned_cols=23 Identities=43% Similarity=0.634 Sum_probs=21.6
Q ss_pred cEEEeCCCCccHHHHHHHHHHHH
Q 017884 76 HLLLYGPPGTGKTSTILAVARKL 98 (364)
Q Consensus 76 ~lll~G~~G~GKt~la~~l~~~l 98 (364)
.+.|.||+|+||||+++.+++.+
T Consensus 11 ~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 11 VVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47999999999999999999987
No 310
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=95.40 E-value=0.18 Score=41.69 Aligned_cols=24 Identities=21% Similarity=0.466 Sum_probs=20.8
Q ss_pred CCcEEEeCCCCccHHHHHHHHHHH
Q 017884 74 LPHLLLYGPPGTGKTSTILAVARK 97 (364)
Q Consensus 74 ~~~lll~G~~G~GKt~la~~l~~~ 97 (364)
.+.+++.|++|+|||+++..+...
T Consensus 29 ~~~i~v~G~~~~GKSslin~l~~~ 52 (223)
T 4dhe_A 29 QPEIAFAGRSNAGKSTAINVLCNQ 52 (223)
T ss_dssp SCEEEEEESCHHHHHHHHHHHTTC
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCC
Confidence 345899999999999999998765
No 311
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=95.40 E-value=0.086 Score=52.46 Aligned_cols=20 Identities=40% Similarity=0.468 Sum_probs=17.0
Q ss_pred CcEEEeCCCCccHHHHHHHH
Q 017884 75 PHLLLYGPPGTGKTSTILAV 94 (364)
Q Consensus 75 ~~lll~G~~G~GKt~la~~l 94 (364)
.++++.||+|+|||+.+...
T Consensus 47 ~~~lv~apTGsGKT~~~~l~ 66 (715)
T 2va8_A 47 NRLLLTSPTGSGKTLIAEMG 66 (715)
T ss_dssp CCEEEECCTTSCHHHHHHHH
T ss_pred CcEEEEcCCCCcHHHHHHHH
Confidence 56999999999999988443
No 312
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=95.39 E-value=0.11 Score=48.53 Aligned_cols=48 Identities=21% Similarity=0.279 Sum_probs=32.4
Q ss_pred HHHHHHhcCCCCc--EEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCC
Q 017884 64 TIDRLTSENRLPH--LLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASD 114 (364)
Q Consensus 64 ~l~~~~~~~~~~~--lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~ 114 (364)
.|...+ +|-.+. ++|.|+||+|||+++..++...... +..++.++...
T Consensus 186 ~LD~~l-gGl~~G~liiIaG~pG~GKTtlal~ia~~~a~~--g~~vl~fSlEm 235 (444)
T 3bgw_A 186 ELDRMT-YGYKRRNFVLIAARPSMGKTAFALKQAKNMSDN--DDVVNLHSLEM 235 (444)
T ss_dssp HHHHHH-SSBCSSCEEEEEECSSSSHHHHHHHHHHHHHHT--TCEEEEECSSS
T ss_pred HHHhhc-CCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHc--CCEEEEEECCC
Confidence 344445 343333 7999999999999999998887544 34556665543
No 313
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=95.38 E-value=0.016 Score=49.17 Aligned_cols=28 Identities=25% Similarity=0.421 Sum_probs=24.4
Q ss_pred EEEeCCCCccHHHHHHHHHHHHcCCCCC
Q 017884 77 LLLYGPPGTGKTSTILAVARKLYGAQYH 104 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l~~~~~~ 104 (364)
++|.|++|+||||+++.++..+...+..
T Consensus 30 i~~eG~~GsGKsT~~~~l~~~l~~~~~~ 57 (236)
T 3lv8_A 30 IVIEGLEGAGKSTAIQVVVETLQQNGID 57 (236)
T ss_dssp EEEEESTTSCHHHHHHHHHHHHHHTTCC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcCCC
Confidence 7999999999999999999998655543
No 314
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=95.37 E-value=0.19 Score=40.59 Aligned_cols=24 Identities=33% Similarity=0.546 Sum_probs=20.8
Q ss_pred CCcEEEeCCCCccHHHHHHHHHHH
Q 017884 74 LPHLLLYGPPGTGKTSTILAVARK 97 (364)
Q Consensus 74 ~~~lll~G~~G~GKt~la~~l~~~ 97 (364)
...+++.|++|+|||+++..+...
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 345999999999999999999754
No 315
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.37 E-value=0.088 Score=43.23 Aligned_cols=24 Identities=29% Similarity=0.594 Sum_probs=20.9
Q ss_pred cEEEeCCCCccHHHHHHHHHHHHc
Q 017884 76 HLLLYGPPGTGKTSTILAVARKLY 99 (364)
Q Consensus 76 ~lll~G~~G~GKt~la~~l~~~l~ 99 (364)
.+++.|++|+|||++++.+.....
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~~~ 51 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQGLF 51 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSC
T ss_pred EEEEECcCCCCHHHHHHHHHhCCC
Confidence 389999999999999999987543
No 316
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=95.36 E-value=0.23 Score=38.64 Aligned_cols=22 Identities=23% Similarity=0.533 Sum_probs=19.9
Q ss_pred EEEeCCCCccHHHHHHHHHHHH
Q 017884 77 LLLYGPPGTGKTSTILAVARKL 98 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l 98 (364)
+++.|++|+|||++++++...-
T Consensus 6 i~v~G~~~~GKssli~~l~~~~ 27 (167)
T 1c1y_A 6 LVVLGSGGVGKSALTVQFVQGI 27 (167)
T ss_dssp EEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 7999999999999999998753
No 317
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.34 E-value=0.033 Score=49.61 Aligned_cols=35 Identities=20% Similarity=0.228 Sum_probs=25.4
Q ss_pred HHHHHHhcCCCCc--EEEeCCCCccHHHHHHHHHHHH
Q 017884 64 TIDRLTSENRLPH--LLLYGPPGTGKTSTILAVARKL 98 (364)
Q Consensus 64 ~l~~~~~~~~~~~--lll~G~~G~GKt~la~~l~~~l 98 (364)
.|...+..|-.+. ++|+|+||+|||+++..++...
T Consensus 86 ~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~~~ 122 (322)
T 2i1q_A 86 ELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNL 122 (322)
T ss_dssp HHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred hHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3444454442232 6999999999999999999864
No 318
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=95.33 E-value=0.015 Score=54.24 Aligned_cols=25 Identities=28% Similarity=0.452 Sum_probs=21.7
Q ss_pred CcEEEeCCCCccHHHHHHHHHHHHc
Q 017884 75 PHLLLYGPPGTGKTSTILAVARKLY 99 (364)
Q Consensus 75 ~~lll~G~~G~GKt~la~~l~~~l~ 99 (364)
..++|+|++|+|||+++..++....
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~~ 176 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNIA 176 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCccHHHHHHHhhhh
Confidence 3589999999999999999987754
No 319
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=95.32 E-value=0.12 Score=48.05 Aligned_cols=35 Identities=20% Similarity=0.162 Sum_probs=24.8
Q ss_pred HHHHHHHHHHhcCCCCcEEEeCCCCccHHHHHHHHHHHH
Q 017884 60 DIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKL 98 (364)
Q Consensus 60 ~~~~~l~~~~~~~~~~~lll~G~~G~GKt~la~~l~~~l 98 (364)
.....+..++.. ++++.+|+|+|||..+-.++...
T Consensus 13 ~Q~~~i~~~~~~----~~ll~~~tG~GKT~~~~~~~~~~ 47 (494)
T 1wp9_A 13 YQEVIYAKCKET----NCLIVLPTGLGKTLIAMMIAEYR 47 (494)
T ss_dssp HHHHHHHHGGGS----CEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhC----CEEEEcCCCCCHHHHHHHHHHHH
Confidence 344444444443 79999999999999887776654
No 320
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=95.31 E-value=0.073 Score=55.01 Aligned_cols=56 Identities=14% Similarity=0.086 Sum_probs=32.5
Q ss_pred CCCCChhhccCCCCCcchh--ccHHHHHHHHHHHhcCCCCcEEEeCCCCccHHHHHHHHHH
Q 017884 38 IKASPWVEKYRPQSLADVA--AHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVAR 96 (364)
Q Consensus 38 ~~~~~~~~~~~p~~~~~~v--g~~~~~~~l~~~~~~~~~~~lll~G~~G~GKt~la~~l~~ 96 (364)
....||.+...|.....+. -.+.....+..+ ..+ .++++.+|+|+|||.++.....
T Consensus 66 ~~~~~~~~~~~p~~~~~~~f~L~~~Q~eai~~l-~~g--~~vLV~apTGSGKTlva~lai~ 123 (1010)
T 2xgj_A 66 YDYTPIAEHKRVNEARTYPFTLDPFQDTAISCI-DRG--ESVLVSAHTSAGKTVVAEYAIA 123 (1010)
T ss_dssp CCCCCGGGCCCSSCSCCCSSCCCHHHHHHHHHH-HHT--CEEEEECCTTSCHHHHHHHHHH
T ss_pred cccCCCCcccChhhHHhCCCCCCHHHHHHHHHH-HcC--CCEEEECCCCCChHHHHHHHHH
Confidence 3556777766564322221 233333344443 333 4699999999999998754433
No 321
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=95.31 E-value=0.1 Score=41.74 Aligned_cols=22 Identities=32% Similarity=0.513 Sum_probs=20.0
Q ss_pred EEEeCCCCccHHHHHHHHHHHH
Q 017884 77 LLLYGPPGTGKTSTILAVARKL 98 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l 98 (364)
+++.|++|+|||+++..+...-
T Consensus 13 i~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 13 FLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 8999999999999999998653
No 322
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=95.31 E-value=0.0085 Score=49.47 Aligned_cols=22 Identities=27% Similarity=0.363 Sum_probs=20.3
Q ss_pred cEEEeCCCCccHHHHHHHHHHHH
Q 017884 76 HLLLYGPPGTGKTSTILAVARKL 98 (364)
Q Consensus 76 ~lll~G~~G~GKt~la~~l~~~l 98 (364)
.+.|.|++|+||||+++.++. +
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~ 24 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-L 24 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-T
T ss_pred EEEEECCCCcCHHHHHHHHHH-C
Confidence 478999999999999999998 5
No 323
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=95.30 E-value=0.0097 Score=49.99 Aligned_cols=23 Identities=30% Similarity=0.495 Sum_probs=21.1
Q ss_pred EEEeCCCCccHHHHHHHHHHHHc
Q 017884 77 LLLYGPPGTGKTSTILAVARKLY 99 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l~ 99 (364)
+.|.||+|+||||+++.++..+.
T Consensus 19 i~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 19 YIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp EEEECCTTSCHHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHhccCC
Confidence 79999999999999999998763
No 324
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=95.28 E-value=0.039 Score=50.68 Aligned_cols=38 Identities=29% Similarity=0.403 Sum_probs=25.3
Q ss_pred ceEEEEEeCCCCCCHH-HHHHHHHHHHHhccCccEEEEe
Q 017884 141 SVKLVLLDEADAMTKD-AQFALRRVIEKYTKNTRFALIC 178 (364)
Q Consensus 141 ~~~viiiDe~~~l~~~-~~~~L~~~le~~~~~~~~Il~~ 178 (364)
..++||+||+|.+... ....+..++...+....+++.|
T Consensus 179 ~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~S 217 (410)
T 2j0s_A 179 AIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLIS 217 (410)
T ss_dssp TCCEEEEETHHHHTSTTTHHHHHHHHTTSCTTCEEEEEE
T ss_pred heeEEEEccHHHHHhhhhHHHHHHHHHhCccCceEEEEE
Confidence 3679999999987543 2445555665555566666665
No 325
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=95.27 E-value=0.08 Score=49.24 Aligned_cols=21 Identities=29% Similarity=0.366 Sum_probs=16.8
Q ss_pred CcEEEeCCCCccHHHHH-HHHH
Q 017884 75 PHLLLYGPPGTGKTSTI-LAVA 95 (364)
Q Consensus 75 ~~lll~G~~G~GKt~la-~~l~ 95 (364)
.++++.||+|+|||..+ ..+.
T Consensus 3 ~~~lv~a~TGsGKT~~~l~~~l 24 (431)
T 2v6i_A 3 ELTVLDLHPGAGKTRRVLPQLV 24 (431)
T ss_dssp CEEEEECCTTSCTTTTHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 45899999999999875 4444
No 326
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=95.27 E-value=0.09 Score=44.24 Aligned_cols=39 Identities=26% Similarity=0.364 Sum_probs=25.2
Q ss_pred ceEEEEEeCCCCCCHH-HHHHHHHHHHHhccCccEEEEee
Q 017884 141 SVKLVLLDEADAMTKD-AQFALRRVIEKYTKNTRFALICN 179 (364)
Q Consensus 141 ~~~viiiDe~~~l~~~-~~~~L~~~le~~~~~~~~Il~~~ 179 (364)
..+++|+||+|.+... ....+..++...+....+++.|.
T Consensus 171 ~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SA 210 (236)
T 2pl3_A 171 DLQMLVLDEADRILDMGFADTMNAVIENLPKKRQTLLFSA 210 (236)
T ss_dssp TCCEEEETTHHHHHHTTTHHHHHHHHHTSCTTSEEEEEES
T ss_pred cccEEEEeChHHHhcCCcHHHHHHHHHhCCCCCeEEEEEe
Confidence 4679999999987532 23455566666665665555553
No 327
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=95.26 E-value=0.039 Score=58.79 Aligned_cols=24 Identities=29% Similarity=0.418 Sum_probs=21.3
Q ss_pred cEEEeCCCCccHHHHHHHHHHHHc
Q 017884 76 HLLLYGPPGTGKTSTILAVARKLY 99 (364)
Q Consensus 76 ~lll~G~~G~GKt~la~~l~~~l~ 99 (364)
.+.|+||+|+||||+++.+.+.+.
T Consensus 446 ~vaivG~sGsGKSTll~ll~~~~~ 469 (1321)
T 4f4c_A 446 TVALVGSSGCGKSTIISLLLRYYD 469 (1321)
T ss_dssp EEEEEECSSSCHHHHHHHHTTSSC
T ss_pred EEEEEecCCCcHHHHHHHhccccc
Confidence 489999999999999999988753
No 328
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=95.26 E-value=0.024 Score=50.42 Aligned_cols=23 Identities=22% Similarity=0.247 Sum_probs=21.2
Q ss_pred EEEeCCCCccHHHHHHHHHHHHc
Q 017884 77 LLLYGPPGTGKTSTILAVARKLY 99 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l~ 99 (364)
+.|.||+|+||||+++.+...+.
T Consensus 95 igI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 95 IGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhc
Confidence 69999999999999999988874
No 329
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.25 E-value=0.055 Score=42.49 Aligned_cols=22 Identities=32% Similarity=0.499 Sum_probs=19.8
Q ss_pred EEEeCCCCccHHHHHHHHHHHH
Q 017884 77 LLLYGPPGTGKTSTILAVARKL 98 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l 98 (364)
+++.|++|+|||+++.++...-
T Consensus 6 i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 6 LVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 7999999999999999998654
No 330
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.24 E-value=0.013 Score=51.72 Aligned_cols=22 Identities=32% Similarity=0.679 Sum_probs=20.9
Q ss_pred EEEeCCCCccHHHHHHHHHHHH
Q 017884 77 LLLYGPPGTGKTSTILAVARKL 98 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l 98 (364)
++|.||+|+|||+++..+++.+
T Consensus 13 i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 13 IFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp EEEECCTTSCHHHHHHHHHHHS
T ss_pred EEEECCCccCHHHHHHHHHHhC
Confidence 6899999999999999999986
No 331
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=95.24 E-value=0.043 Score=49.94 Aligned_cols=40 Identities=23% Similarity=0.380 Sum_probs=26.2
Q ss_pred ceEEEEEeCCCCCCHH-HHHHHHHHHHHhccCccEEEEeec
Q 017884 141 SVKLVLLDEADAMTKD-AQFALRRVIEKYTKNTRFALICNQ 180 (364)
Q Consensus 141 ~~~viiiDe~~~l~~~-~~~~L~~~le~~~~~~~~Il~~~~ 180 (364)
...++|+||+|.+... ....+..++...+....+++.|..
T Consensus 162 ~~~~vIiDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT 202 (394)
T 1fuu_A 162 KIKMFILDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSAT 202 (394)
T ss_dssp TCCEEEEETHHHHHHTTCHHHHHHHHHHSCTTCEEEEECSS
T ss_pred hCcEEEEEChHHhhCCCcHHHHHHHHHhCCCCceEEEEEEe
Confidence 4679999999987432 234455556655666767766643
No 332
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=95.22 E-value=0.01 Score=49.27 Aligned_cols=22 Identities=36% Similarity=0.480 Sum_probs=20.9
Q ss_pred EEEeCCCCccHHHHHHHHHHHH
Q 017884 77 LLLYGPPGTGKTSTILAVARKL 98 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l 98 (364)
+.|.||+|+||||+++.++..+
T Consensus 9 i~i~G~~GsGKSTl~~~l~~~~ 30 (211)
T 3asz_A 9 IGIAGGTASGKTTLAQALARTL 30 (211)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999999986
No 333
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.22 E-value=0.01 Score=50.91 Aligned_cols=23 Identities=22% Similarity=0.274 Sum_probs=21.4
Q ss_pred EEEeCCCCccHHHHHHHHHHHHc
Q 017884 77 LLLYGPPGTGKTSTILAVARKLY 99 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l~ 99 (364)
+.|.|++|+||||+++.|++.+.
T Consensus 25 I~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 25 IGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp EEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHhh
Confidence 79999999999999999999863
No 334
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=95.22 E-value=0.01 Score=49.77 Aligned_cols=23 Identities=30% Similarity=0.619 Sum_probs=21.1
Q ss_pred cEEEeCCCCccHHHHHHHHHHHH
Q 017884 76 HLLLYGPPGTGKTSTILAVARKL 98 (364)
Q Consensus 76 ~lll~G~~G~GKt~la~~l~~~l 98 (364)
.+.|.||+|+||||+++.++..+
T Consensus 25 ~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 38999999999999999999875
No 335
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=95.22 E-value=0.018 Score=48.12 Aligned_cols=28 Identities=29% Similarity=0.408 Sum_probs=24.6
Q ss_pred EEEeCCCCccHHHHHHHHHHHHcCCCCC
Q 017884 77 LLLYGPPGTGKTSTILAVARKLYGAQYH 104 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l~~~~~~ 104 (364)
++|.|++|+||||+++.+++.+...+..
T Consensus 9 i~~eG~~gsGKsT~~~~l~~~l~~~~~~ 36 (213)
T 4edh_A 9 VTLEGPEGAGKSTNRDYLAERLRERGIE 36 (213)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHTTTCC
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCC
Confidence 6999999999999999999999765543
No 336
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.21 E-value=0.11 Score=41.28 Aligned_cols=22 Identities=27% Similarity=0.495 Sum_probs=20.0
Q ss_pred EEEeCCCCccHHHHHHHHHHHH
Q 017884 77 LLLYGPPGTGKTSTILAVARKL 98 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l 98 (364)
+++.|++|+|||+++..+...-
T Consensus 13 i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 13 VMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECcCCCCHHHHHHHHHhCC
Confidence 8999999999999999998754
No 337
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=95.21 E-value=0.01 Score=49.15 Aligned_cols=20 Identities=30% Similarity=0.311 Sum_probs=18.9
Q ss_pred EEEeCCCCccHHHHHHHHHH
Q 017884 77 LLLYGPPGTGKTSTILAVAR 96 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~ 96 (364)
+.|.|++|+||||+++.++.
T Consensus 5 i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 5 VGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEECSTTSCHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 68999999999999999987
No 338
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=95.21 E-value=0.023 Score=55.38 Aligned_cols=42 Identities=19% Similarity=0.355 Sum_probs=31.0
Q ss_pred ceEEEEEeCCC-CCCHHHHHHHHHHHHHhccCccEEEEeeccc
Q 017884 141 SVKLVLLDEAD-AMTKDAQFALRRVIEKYTKNTRFALICNQVN 182 (364)
Q Consensus 141 ~~~viiiDe~~-~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~ 182 (364)
+++++++||.- .+.......+.+.+.+...+..+|++++..+
T Consensus 509 ~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~ 551 (598)
T 3qf4_B 509 NPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLN 551 (598)
T ss_dssp CCSEEEECCCCTTCCHHHHHHHHHHHHHHHTTSEEEEESCCTT
T ss_pred CCCEEEEECCccCCCHHHHHHHHHHHHHHcCCCEEEEEecCHH
Confidence 57899999964 4556677777777777655666788887665
No 339
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=95.21 E-value=0.012 Score=55.45 Aligned_cols=38 Identities=21% Similarity=0.293 Sum_probs=27.7
Q ss_pred cHHHHHHHHHHHhcCCCCcEEEeCCCCccHHHHHHHHHHHH
Q 017884 58 HRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKL 98 (364)
Q Consensus 58 ~~~~~~~l~~~~~~~~~~~lll~G~~G~GKt~la~~l~~~l 98 (364)
.+.....+..++.. ..+++.||+|+|||..+..++..+
T Consensus 95 ~~~Q~~ai~~i~~~---~~~ll~~~TGsGKT~~~l~~i~~~ 132 (472)
T 2fwr_A 95 RDYQEKALERWLVD---KRGCIVLPTGSGKTHVAMAAINEL 132 (472)
T ss_dssp CHHHHHHHHHHTTT---TEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhc---CCEEEEeCCCCCHHHHHHHHHHHc
Confidence 44555555555544 349999999999999988877765
No 340
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.21 E-value=0.012 Score=48.59 Aligned_cols=23 Identities=35% Similarity=0.488 Sum_probs=21.5
Q ss_pred cEEEeCCCCccHHHHHHHHHHHH
Q 017884 76 HLLLYGPPGTGKTSTILAVARKL 98 (364)
Q Consensus 76 ~lll~G~~G~GKt~la~~l~~~l 98 (364)
.+.|.|++|+||||+++.++..+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 47899999999999999999987
No 341
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=95.21 E-value=0.01 Score=49.36 Aligned_cols=42 Identities=33% Similarity=0.529 Sum_probs=29.0
Q ss_pred ccCCCCCcchhccHHHHHHHHHHHhcCCCCcEEEeCCCCccHHHHHHHHHHH
Q 017884 46 KYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARK 97 (364)
Q Consensus 46 ~~~p~~~~~~vg~~~~~~~l~~~~~~~~~~~lll~G~~G~GKt~la~~l~~~ 97 (364)
..+|+++.+ ..+++. +..| ..+.|.||.|+||||+++.++..
T Consensus 4 ~i~pk~~g~----~~~l~~----i~~G--e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 4 VIRPKTLGQ----KHYVDA----IDTN--TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp CCCCCSHHH----HHHHHH----HHHC--SEEEEECCTTSSTTHHHHHHHHH
T ss_pred ccccCCHhH----HHHHHh----ccCC--CEEEEECCCCCCHHHHHHHHhcC
Confidence 356777643 223333 3444 34789999999999999999876
No 342
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.20 E-value=0.014 Score=47.90 Aligned_cols=22 Identities=27% Similarity=0.362 Sum_probs=20.7
Q ss_pred EEEeCCCCccHHHHHHHHHHHH
Q 017884 77 LLLYGPPGTGKTSTILAVARKL 98 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l 98 (364)
+.|+|++|+||||+++.+++.+
T Consensus 15 IgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 15 IGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHhc
Confidence 6899999999999999999986
No 343
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=95.19 E-value=0.083 Score=42.61 Aligned_cols=23 Identities=17% Similarity=0.300 Sum_probs=20.2
Q ss_pred cEEEeCCCCccHHHHHHHHHHHH
Q 017884 76 HLLLYGPPGTGKTSTILAVARKL 98 (364)
Q Consensus 76 ~lll~G~~G~GKt~la~~l~~~l 98 (364)
.+++.|++|+|||+++..+...-
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~~ 44 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAGR 44 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 38999999999999999998653
No 344
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=95.18 E-value=0.017 Score=54.79 Aligned_cols=42 Identities=7% Similarity=0.098 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHh--cCCCCcEEEeCCCCccHHHHHHHHHHHHcC
Q 017884 59 RDIVDTIDRLTS--ENRLPHLLLYGPPGTGKTSTILAVARKLYG 100 (364)
Q Consensus 59 ~~~~~~l~~~~~--~~~~~~lll~G~~G~GKt~la~~l~~~l~~ 100 (364)
+++.+.+++... ......++|.|.+|+||||+++++++.+..
T Consensus 378 peV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 378 PEVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp HHHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred hhhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 566666666552 222234899999999999999999999964
No 345
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=95.17 E-value=0.066 Score=43.86 Aligned_cols=21 Identities=29% Similarity=0.430 Sum_probs=19.4
Q ss_pred EEEeCCCCccHHHHHHHHHHH
Q 017884 77 LLLYGPPGTGKTSTILAVARK 97 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~ 97 (364)
+++.|++|+|||+++..+...
T Consensus 32 i~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 32 LVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEECTTSSHHHHHHHHHHS
T ss_pred EEEECcCCCCHHHHHHHHhhC
Confidence 899999999999999999764
No 346
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=95.17 E-value=0.013 Score=49.64 Aligned_cols=24 Identities=38% Similarity=0.607 Sum_probs=22.3
Q ss_pred EEEeCCCCccHHHHHHHHHHHHcC
Q 017884 77 LLLYGPPGTGKTSTILAVARKLYG 100 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l~~ 100 (364)
++|.|++|+||||+++.+++.+..
T Consensus 29 i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 29 ITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTT
T ss_pred EEEEcCCCCCHHHHHHHHHHHHhc
Confidence 799999999999999999999854
No 347
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=95.17 E-value=0.012 Score=46.54 Aligned_cols=22 Identities=27% Similarity=0.440 Sum_probs=21.1
Q ss_pred EEEeCCCCccHHHHHHHHHHHH
Q 017884 77 LLLYGPPGTGKTSTILAVARKL 98 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l 98 (364)
+.|.||.|+||||+++.++..+
T Consensus 36 v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 36 VYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 7999999999999999999987
No 348
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=95.13 E-value=0.011 Score=48.95 Aligned_cols=23 Identities=22% Similarity=0.582 Sum_probs=21.1
Q ss_pred cEEEeCCCCccHHHHHHHHHHHH
Q 017884 76 HLLLYGPPGTGKTSTILAVARKL 98 (364)
Q Consensus 76 ~lll~G~~G~GKt~la~~l~~~l 98 (364)
.+.|.||+|+||||+++.++..+
T Consensus 22 i~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 37899999999999999999886
No 349
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=95.12 E-value=0.14 Score=43.21 Aligned_cols=22 Identities=27% Similarity=0.508 Sum_probs=19.9
Q ss_pred cEEEeCCCCccHHHHHHHHHHH
Q 017884 76 HLLLYGPPGTGKTSTILAVARK 97 (364)
Q Consensus 76 ~lll~G~~G~GKt~la~~l~~~ 97 (364)
.++|.|++|+|||+++..+...
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHcCC
Confidence 4899999999999999999864
No 350
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=95.12 E-value=0.064 Score=52.33 Aligned_cols=106 Identities=15% Similarity=0.133 Sum_probs=62.0
Q ss_pred HHHHHHHHHHhcCCCCcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCCCChHHHHHHHHHHHhcCccc-c-C
Q 017884 60 DIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFS-F-G 137 (364)
Q Consensus 60 ~~~~~l~~~~~~~~~~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~-~ 137 (364)
+..+.+...+... ....+|+|+.|.|||+++..++..+.. . +.+.++.......+.+..........+. + .
T Consensus 179 dQ~~al~~~~~~~-~~~~vlta~RGRGKSa~lG~~~a~~~~-----~-~~vtAP~~~a~~~l~~~~~~~i~~~~Pd~~~~ 251 (671)
T 2zpa_A 179 EQQQLLKQLMTMP-PGVAAVTAARGRGKSALAGQLISRIAG-----R-AIVTAPAKASTDVLAQFAGEKFRFIAPDALLA 251 (671)
T ss_dssp HHHHHHHHHTTCC-SEEEEEEECTTSSHHHHHHHHHHHSSS-----C-EEEECSSCCSCHHHHHHHGGGCCBCCHHHHHH
T ss_pred HHHHHHHHHHHhh-hCeEEEecCCCCCHHHHHHHHHHHHHh-----C-cEEECCCHHHHHHHHHHhhCCeEEeCchhhhh
Confidence 4444454444432 234799999999999999999998742 1 2556666555555444322211110000 0 1
Q ss_pred CccceEEEEEeCCCCCCHHHHHHHHHHHHHhccCccEEEEe
Q 017884 138 VKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALIC 178 (364)
Q Consensus 138 ~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~ 178 (364)
......++||||+-.++......|+. ...+++++|
T Consensus 252 ~~~~~dlliVDEAAaIp~pll~~ll~------~~~~v~~~t 286 (671)
T 2zpa_A 252 SDEQADWLVVDEAAAIPAPLLHQLVS------RFPRTLLTT 286 (671)
T ss_dssp SCCCCSEEEEETGGGSCHHHHHHHHT------TSSEEEEEE
T ss_pred CcccCCEEEEEchhcCCHHHHHHHHh------hCCeEEEEe
Confidence 11136799999999998766555543 234566665
No 351
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.11 E-value=0.19 Score=39.38 Aligned_cols=22 Identities=27% Similarity=0.614 Sum_probs=19.6
Q ss_pred cEEEeCCCCccHHHHHHHHHHH
Q 017884 76 HLLLYGPPGTGKTSTILAVARK 97 (364)
Q Consensus 76 ~lll~G~~G~GKt~la~~l~~~ 97 (364)
.+++.|++|+|||+++..+...
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3799999999999999999864
No 352
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=95.10 E-value=0.053 Score=45.98 Aligned_cols=39 Identities=18% Similarity=0.328 Sum_probs=25.0
Q ss_pred ceEEEEEeCCCCCCHH-HHHHHHHHHHHhccCccEEEEee
Q 017884 141 SVKLVLLDEADAMTKD-AQFALRRVIEKYTKNTRFALICN 179 (364)
Q Consensus 141 ~~~viiiDe~~~l~~~-~~~~L~~~le~~~~~~~~Il~~~ 179 (364)
..+++|+||+|.+... ....+..++...+.+..+++.|.
T Consensus 176 ~~~~lViDEah~l~~~~~~~~~~~i~~~~~~~~q~~~~SA 215 (242)
T 3fe2_A 176 RTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSA 215 (242)
T ss_dssp TCCEEEETTHHHHHHTTCHHHHHHHHTTSCSSCEEEEEES
T ss_pred cccEEEEeCHHHHhhhCcHHHHHHHHHhCCccceEEEEEe
Confidence 4679999999987643 23445555555555666666553
No 353
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.10 E-value=0.01 Score=53.04 Aligned_cols=23 Identities=35% Similarity=0.587 Sum_probs=21.5
Q ss_pred cEEEeCCCCccHHHHHHHHHHHH
Q 017884 76 HLLLYGPPGTGKTSTILAVARKL 98 (364)
Q Consensus 76 ~lll~G~~G~GKt~la~~l~~~l 98 (364)
.++|.||+|+|||+++..|++.+
T Consensus 42 lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 42 LLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp EEEEECSTTSSHHHHHHHHHTTS
T ss_pred eEEEECCCCCCHHHHHHHHHHHC
Confidence 47999999999999999999987
No 354
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=95.10 E-value=0.39 Score=41.36 Aligned_cols=22 Identities=32% Similarity=0.588 Sum_probs=19.8
Q ss_pred cEEEeCCCCccHHHHHHHHHHH
Q 017884 76 HLLLYGPPGTGKTSTILAVARK 97 (364)
Q Consensus 76 ~lll~G~~G~GKt~la~~l~~~ 97 (364)
.+++.|++|+|||+++..+...
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~~ 62 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIGE 62 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3899999999999999999864
No 355
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=95.09 E-value=0.12 Score=47.94 Aligned_cols=35 Identities=20% Similarity=0.389 Sum_probs=26.7
Q ss_pred EEEeCCCCccHHHHHHHHHHHHcCC-CCCCcEEEEe
Q 017884 77 LLLYGPPGTGKTSTILAVARKLYGA-QYHNMILELN 111 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l~~~-~~~~~~~~~~ 111 (364)
+++.|++|+||||++..++..+... +....++..+
T Consensus 103 I~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D 138 (433)
T 2xxa_A 103 VLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSAD 138 (433)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecC
Confidence 6888999999999999999988655 5444444333
No 356
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=95.09 E-value=0.027 Score=45.24 Aligned_cols=22 Identities=18% Similarity=0.342 Sum_probs=19.7
Q ss_pred EEEeCCCCccHHHHHHHHHHHH
Q 017884 77 LLLYGPPGTGKTSTILAVARKL 98 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l 98 (364)
+++.|++|+|||+++..+...-
T Consensus 8 i~~~G~~~~GKssl~~~l~~~~ 29 (186)
T 1mh1_A 8 CVVVGDGAVGKTCLLISYTTNA 29 (186)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 7999999999999999998653
No 357
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=95.08 E-value=0.023 Score=47.39 Aligned_cols=27 Identities=26% Similarity=0.325 Sum_probs=24.0
Q ss_pred EEEeCCCCccHHHHHHHHHHHHcCCCC
Q 017884 77 LLLYGPPGTGKTSTILAVARKLYGAQY 103 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l~~~~~ 103 (364)
+.|.|++|+||||.++.+++.+...+.
T Consensus 6 i~~eG~~gsGKsT~~~~l~~~l~~~~~ 32 (213)
T 4tmk_A 6 IVIEGLEGAGKTTARNVVVETLEQLGI 32 (213)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHTTC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCC
Confidence 799999999999999999999865554
No 358
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=95.08 E-value=0.023 Score=45.81 Aligned_cols=22 Identities=23% Similarity=0.416 Sum_probs=20.1
Q ss_pred EEEeCCCCccHHHHHHHHHHHH
Q 017884 77 LLLYGPPGTGKTSTILAVARKL 98 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l 98 (364)
+++.|++|+|||++++.+...-
T Consensus 10 i~v~G~~~vGKSsli~~l~~~~ 31 (184)
T 1m7b_A 10 IVVVGDSQCGKTALLHVFAKDC 31 (184)
T ss_dssp EEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 7999999999999999998753
No 359
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.08 E-value=0.22 Score=43.73 Aligned_cols=27 Identities=33% Similarity=0.402 Sum_probs=22.9
Q ss_pred EEEeCCCCccHHHHHHHHHHHHcCCCC
Q 017884 77 LLLYGPPGTGKTSTILAVARKLYGAQY 103 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l~~~~~ 103 (364)
+.+.|++|+||||++..++..+...+.
T Consensus 101 i~i~G~~G~GKTT~~~~la~~~~~~g~ 127 (297)
T 1j8m_F 101 IMLVGVQGTGKTTTAGKLAYFYKKKGF 127 (297)
T ss_dssp EEEECSSCSSTTHHHHHHHHHHHHTTC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCC
Confidence 688899999999999999988754443
No 360
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=95.07 E-value=0.046 Score=43.60 Aligned_cols=23 Identities=26% Similarity=0.462 Sum_probs=20.4
Q ss_pred cEEEeCCCCccHHHHHHHHHHHH
Q 017884 76 HLLLYGPPGTGKTSTILAVARKL 98 (364)
Q Consensus 76 ~lll~G~~G~GKt~la~~l~~~l 98 (364)
.+++.|++|+|||+++..+...-
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 38999999999999999998753
No 361
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=95.07 E-value=0.013 Score=50.39 Aligned_cols=23 Identities=35% Similarity=0.538 Sum_probs=21.4
Q ss_pred cEEEeCCCCccHHHHHHHHHHHH
Q 017884 76 HLLLYGPPGTGKTSTILAVARKL 98 (364)
Q Consensus 76 ~lll~G~~G~GKt~la~~l~~~l 98 (364)
.+.|.||+|+||||+++.+++.+
T Consensus 29 ~I~I~G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 29 VITVDGPSGAGKGTLCKALAESL 51 (252)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 47999999999999999999886
No 362
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=95.07 E-value=0.057 Score=42.38 Aligned_cols=21 Identities=33% Similarity=0.610 Sum_probs=18.6
Q ss_pred cEEEeCCCCccHHHHHHHHHH
Q 017884 76 HLLLYGPPGTGKTSTILAVAR 96 (364)
Q Consensus 76 ~lll~G~~G~GKt~la~~l~~ 96 (364)
.+++.|++|+|||++++.+..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 379999999999999998853
No 363
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=95.06 E-value=0.024 Score=60.34 Aligned_cols=60 Identities=18% Similarity=0.319 Sum_probs=39.3
Q ss_pred ceEEEEEeCCCCC-CHHHHHHHHHHHHHhccCccEEEEeeccccCch----hhhccceEEEecCC
Q 017884 141 SVKLVLLDEADAM-TKDAQFALRRVIEKYTKNTRFALICNQVNKIIP----ALQSRCTRFRFAPL 200 (364)
Q Consensus 141 ~~~viiiDe~~~l-~~~~~~~L~~~le~~~~~~~~Il~~~~~~~l~~----~l~sr~~~i~~~~~ 200 (364)
+++|+++||+-.- ..+....+.+.+++...++.+|++++..+-+.. -+.+.++++++..+
T Consensus 1235 ~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~~~TvI~IAHRLsTi~~aD~I~Vld~G~IvE~Gth 1299 (1321)
T 4f4c_A 1235 NPKILLLDEATSALDTESEKVVQEALDRAREGRTCIVIAHRLNTVMNADCIAVVSNGTIIEKGTH 1299 (1321)
T ss_dssp CCSEEEEESCCCSTTSHHHHHHHHHHTTTSSSSEEEEECSSSSTTTTCSEEEEESSSSEEEEECH
T ss_pred CCCEEEEeCccccCCHHHHHHHHHHHHHHcCCCEEEEeccCHHHHHhCCEEEEEECCEEEEECCH
Confidence 5789999998544 455666777888877677778888876553322 12234566766554
No 364
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=95.06 E-value=0.061 Score=43.98 Aligned_cols=22 Identities=32% Similarity=0.475 Sum_probs=19.7
Q ss_pred EEEeCCCCccHHHHHHHHHHHH
Q 017884 77 LLLYGPPGTGKTSTILAVARKL 98 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l 98 (364)
+++.|++|+|||+++..+...-
T Consensus 11 i~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 11 ILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 8999999999999999987653
No 365
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=95.04 E-value=0.12 Score=41.75 Aligned_cols=21 Identities=29% Similarity=0.600 Sum_probs=19.5
Q ss_pred EEEeCCCCccHHHHHHHHHHH
Q 017884 77 LLLYGPPGTGKTSTILAVARK 97 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~ 97 (364)
+++.|++|+|||+++..+...
T Consensus 24 i~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 24 YIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEESSTTSSHHHHHHHHHHS
T ss_pred EEEECcCCCCHHHHHHHHhcC
Confidence 899999999999999999865
No 366
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=95.04 E-value=0.16 Score=40.89 Aligned_cols=22 Identities=27% Similarity=0.443 Sum_probs=20.0
Q ss_pred EEEeCCCCccHHHHHHHHHHHH
Q 017884 77 LLLYGPPGTGKTSTILAVARKL 98 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l 98 (364)
+++.|++|+|||+++..+...-
T Consensus 24 i~vvG~~~vGKTsLi~~l~~~~ 45 (187)
T 3c5c_A 24 LAILGRRGAGKSALTVKFLTKR 45 (187)
T ss_dssp EEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEECCCCCcHHHHHHHHHhCC
Confidence 8999999999999999998753
No 367
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=95.03 E-value=0.011 Score=47.64 Aligned_cols=39 Identities=21% Similarity=0.216 Sum_probs=27.2
Q ss_pred CcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCC
Q 017884 75 PHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNAS 113 (364)
Q Consensus 75 ~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~ 113 (364)
+.+.|.|++|+||||+++.++..+...+...-.+.+++.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~ 41 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAH 41 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC---
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCc
Confidence 347899999999999999999998644333344454443
No 368
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=95.01 E-value=0.15 Score=42.06 Aligned_cols=24 Identities=21% Similarity=0.232 Sum_probs=21.1
Q ss_pred CcEEEeCCCCccHHHHHHHHHHHH
Q 017884 75 PHLLLYGPPGTGKTSTILAVARKL 98 (364)
Q Consensus 75 ~~lll~G~~G~GKt~la~~l~~~l 98 (364)
..+++.|++|+|||+++..+...-
T Consensus 8 ~ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 8 RAVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 448999999999999999998754
No 369
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=94.99 E-value=0.036 Score=48.94 Aligned_cols=25 Identities=36% Similarity=0.509 Sum_probs=22.5
Q ss_pred EEEeCCCCccHHHHHHHHHHHHcCC
Q 017884 77 LLLYGPPGTGKTSTILAVARKLYGA 101 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l~~~ 101 (364)
+.|.||+|+||||+++.++..+...
T Consensus 105 i~lvG~nGsGKTTll~~Lagll~~~ 129 (304)
T 1rj9_A 105 VLVVGVNGVGKTTTIAKLGRYYQNL 129 (304)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred EEEECCCCCcHHHHHHHHHHHHHhc
Confidence 7899999999999999999988644
No 370
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=94.99 E-value=0.013 Score=48.25 Aligned_cols=21 Identities=19% Similarity=0.281 Sum_probs=19.9
Q ss_pred EEEeCCCCccHHHHHHHHHHH
Q 017884 77 LLLYGPPGTGKTSTILAVARK 97 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~ 97 (364)
+.|.|++|+||||+++.+++.
T Consensus 11 I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 11 IGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp EEEEECTTSCHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHC
Confidence 799999999999999999985
No 371
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=94.96 E-value=0.014 Score=52.32 Aligned_cols=23 Identities=35% Similarity=0.676 Sum_probs=21.5
Q ss_pred cEEEeCCCCccHHHHHHHHHHHH
Q 017884 76 HLLLYGPPGTGKTSTILAVARKL 98 (364)
Q Consensus 76 ~lll~G~~G~GKt~la~~l~~~l 98 (364)
.++|.||+|+|||+++..+++.+
T Consensus 9 lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred eEEEECCCcCcHHHHHHHHHHHc
Confidence 37999999999999999999997
No 372
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=94.96 E-value=0.015 Score=55.35 Aligned_cols=54 Identities=15% Similarity=0.212 Sum_probs=37.6
Q ss_pred hhccCCC--CCcchhc----cHHHHHHHHHHHhcCCCCcEEEeCCCCccHHHHHHHHHHHHc
Q 017884 44 VEKYRPQ--SLADVAA----HRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLY 99 (364)
Q Consensus 44 ~~~~~p~--~~~~~vg----~~~~~~~l~~~~~~~~~~~lll~G~~G~GKt~la~~l~~~l~ 99 (364)
++++++. ++.+++. ...++..+...+..+. .++|.||+|+||||++++++..+.
T Consensus 226 IR~~~~~~~~~~~l~~~G~~~~~~l~~l~~~v~~g~--~i~I~GptGSGKTTlL~aL~~~i~ 285 (511)
T 2oap_1 226 IRKFTIEPLTPIDLIEKGTVPSGVLAYLWLAIEHKF--SAIVVGETASGKTTTLNAIMMFIP 285 (511)
T ss_dssp EEECCCCCCCHHHHHHTTSSCHHHHHHHHHHHHTTC--CEEEEESTTSSHHHHHHHHGGGSC
T ss_pred EEecCCCCCChhhHHhcCCCCHHHHHHHHHHHhCCC--EEEEECCCCCCHHHHHHHHHhhCC
Confidence 4444433 3455542 3556666766676663 499999999999999999988763
No 373
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=94.95 E-value=0.057 Score=52.37 Aligned_cols=43 Identities=21% Similarity=0.434 Sum_probs=31.3
Q ss_pred ceEEEEEeCCC-CCCHHHHHHHHHHHHHhccCccEEEEeecccc
Q 017884 141 SVKLVLLDEAD-AMTKDAQFALRRVIEKYTKNTRFALICNQVNK 183 (364)
Q Consensus 141 ~~~viiiDe~~-~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~ 183 (364)
+++++++||.- .+.......+.+.+.+...+..+|++++..+.
T Consensus 498 ~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~ 541 (582)
T 3b60_A 498 DSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLST 541 (582)
T ss_dssp CCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGG
T ss_pred CCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEeccHHH
Confidence 57799999974 45566777788888776555667788876553
No 374
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=94.95 E-value=0.065 Score=43.74 Aligned_cols=22 Identities=23% Similarity=0.543 Sum_probs=19.9
Q ss_pred cEEEeCCCCccHHHHHHHHHHH
Q 017884 76 HLLLYGPPGTGKTSTILAVARK 97 (364)
Q Consensus 76 ~lll~G~~G~GKt~la~~l~~~ 97 (364)
.+++.|++|+|||+++..+...
T Consensus 30 ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 30 KIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4899999999999999999764
No 375
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=94.92 E-value=0.11 Score=41.24 Aligned_cols=21 Identities=33% Similarity=0.438 Sum_probs=19.4
Q ss_pred EEEeCCCCccHHHHHHHHHHH
Q 017884 77 LLLYGPPGTGKTSTILAVARK 97 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~ 97 (364)
+++.|++|+|||+++..+...
T Consensus 17 i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 17 LVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 899999999999999999864
No 376
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=94.91 E-value=0.15 Score=40.73 Aligned_cols=22 Identities=27% Similarity=0.543 Sum_probs=20.0
Q ss_pred EEEeCCCCccHHHHHHHHHHHH
Q 017884 77 LLLYGPPGTGKTSTILAVARKL 98 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l 98 (364)
+++.|++|+|||+++..+....
T Consensus 21 i~v~G~~~~GKSsl~~~l~~~~ 42 (183)
T 3kkq_A 21 LVVVGDGGVGKSALTIQFFQKI 42 (183)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHhCC
Confidence 7999999999999999998653
No 377
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=94.91 E-value=0.035 Score=46.16 Aligned_cols=22 Identities=32% Similarity=0.475 Sum_probs=20.1
Q ss_pred EEEeCCCCccHHHHHHHHHHHH
Q 017884 77 LLLYGPPGTGKTSTILAVARKL 98 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l 98 (364)
+++.|++|+|||+++..+...-
T Consensus 30 i~vvG~~~vGKSsL~~~l~~~~ 51 (214)
T 3q3j_B 30 LVLVGDVQCGKTAMLQVLAKDC 51 (214)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 8999999999999999998753
No 378
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.88 E-value=0.16 Score=41.05 Aligned_cols=22 Identities=27% Similarity=0.659 Sum_probs=20.0
Q ss_pred cEEEeCCCCccHHHHHHHHHHH
Q 017884 76 HLLLYGPPGTGKTSTILAVARK 97 (364)
Q Consensus 76 ~lll~G~~G~GKt~la~~l~~~ 97 (364)
.+++.|++|+|||+++.++...
T Consensus 10 ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHcC
Confidence 3899999999999999999874
No 379
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=94.88 E-value=0.081 Score=52.73 Aligned_cols=24 Identities=25% Similarity=0.436 Sum_probs=18.3
Q ss_pred CcEEEeCCCCccHHHHH-HHHHHHH
Q 017884 75 PHLLLYGPPGTGKTSTI-LAVARKL 98 (364)
Q Consensus 75 ~~lll~G~~G~GKt~la-~~l~~~l 98 (364)
.++++.||+|+|||..+ ..+.+.+
T Consensus 40 ~~~lv~apTGsGKT~~~~l~il~~~ 64 (720)
T 2zj8_A 40 KNALISIPTASGKTLIAEIAMVHRI 64 (720)
T ss_dssp CEEEEECCGGGCHHHHHHHHHHHHH
T ss_pred CcEEEEcCCccHHHHHHHHHHHHHH
Confidence 56999999999999987 3444333
No 380
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=94.85 E-value=0.058 Score=51.68 Aligned_cols=42 Identities=10% Similarity=0.252 Sum_probs=32.3
Q ss_pred ceEEEEEeCC-CCCCHHHHHHHHHHHHHhccCccEEEEeeccc
Q 017884 141 SVKLVLLDEA-DAMTKDAQFALRRVIEKYTKNTRFALICNQVN 182 (364)
Q Consensus 141 ~~~viiiDe~-~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~ 182 (364)
+++++++||- ..|....+..+.+++.+......+|+++....
T Consensus 156 ~p~illlDEPts~LD~~~~~~l~~~l~~l~~g~tii~vsHdl~ 198 (538)
T 3ozx_A 156 EADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVVDHDLI 198 (538)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHHCTTSEEEEECSCHH
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHHhCCCEEEEEEeChH
Confidence 5789999995 56677788888999888765566777776543
No 381
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=94.83 E-value=0.22 Score=38.70 Aligned_cols=22 Identities=23% Similarity=0.366 Sum_probs=19.9
Q ss_pred EEEeCCCCccHHHHHHHHHHHH
Q 017884 77 LLLYGPPGTGKTSTILAVARKL 98 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l 98 (364)
+++.|++|+|||+++..+...-
T Consensus 3 i~~~G~~~~GKssl~~~l~~~~ 24 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLGE 24 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 7899999999999999998754
No 382
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=94.83 E-value=0.029 Score=46.33 Aligned_cols=22 Identities=23% Similarity=0.416 Sum_probs=20.3
Q ss_pred EEEeCCCCccHHHHHHHHHHHH
Q 017884 77 LLLYGPPGTGKTSTILAVARKL 98 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l 98 (364)
+++.|++|+|||+++..+...-
T Consensus 31 i~vvG~~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 31 IVVVGDSQCGKTALLHVFAKDC 52 (205)
T ss_dssp EEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 8999999999999999998764
No 383
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=94.83 E-value=0.062 Score=43.61 Aligned_cols=21 Identities=29% Similarity=0.518 Sum_probs=18.7
Q ss_pred EEEeCCCCccHHHHHHHHHHH
Q 017884 77 LLLYGPPGTGKTSTILAVARK 97 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~ 97 (364)
+++.|++|+|||+++..+...
T Consensus 29 i~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 29 VIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEECSTTSSHHHHHHHHCC-
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 899999999999999998754
No 384
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=94.82 E-value=0.029 Score=45.63 Aligned_cols=22 Identities=27% Similarity=0.462 Sum_probs=20.2
Q ss_pred EEEeCCCCccHHHHHHHHHHHH
Q 017884 77 LLLYGPPGTGKTSTILAVARKL 98 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l 98 (364)
+++.|++|+|||+++..+...-
T Consensus 26 i~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 26 IVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 8999999999999999998764
No 385
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=94.81 E-value=0.063 Score=47.94 Aligned_cols=27 Identities=33% Similarity=0.517 Sum_probs=23.2
Q ss_pred EEEeCCCCccHHHHHHHHHHHHcCCCC
Q 017884 77 LLLYGPPGTGKTSTILAVARKLYGAQY 103 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l~~~~~ 103 (364)
+.|.||+|+||||+++.++..+...+.
T Consensus 132 i~lvG~nGaGKTTll~~Lag~l~~~~g 158 (328)
T 3e70_C 132 IMFVGFNGSGKTTTIAKLANWLKNHGF 158 (328)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHHTTC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcCC
Confidence 799999999999999999998754433
No 386
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=94.80 E-value=0.012 Score=48.80 Aligned_cols=22 Identities=23% Similarity=0.369 Sum_probs=20.2
Q ss_pred EEEeCCCCccHHHHHHHHHHHH
Q 017884 77 LLLYGPPGTGKTSTILAVARKL 98 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l 98 (364)
+.|.|++|+||||+++.++..+
T Consensus 24 i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 24 IGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp EEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEECCCCCCHHHHHHHHHHhc
Confidence 6899999999999999998864
No 387
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=94.79 E-value=0.15 Score=50.52 Aligned_cols=39 Identities=15% Similarity=0.179 Sum_probs=26.1
Q ss_pred ceEEEEEeCCCCCC----HHHHHHHHHHHHHhccCccEEEEee
Q 017884 141 SVKLVLLDEADAMT----KDAQFALRRVIEKYTKNTRFALICN 179 (364)
Q Consensus 141 ~~~viiiDe~~~l~----~~~~~~L~~~le~~~~~~~~Il~~~ 179 (364)
..++|||||+|.+. ....+.++..+.....+.++|+.|.
T Consensus 138 ~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~~~~~~~~ii~lSA 180 (702)
T 2p6r_A 138 AVSCLVVDEIHLLDSEKRGATLEILVTKMRRMNKALRVIGLSA 180 (702)
T ss_dssp GCCEEEETTGGGGGCTTTHHHHHHHHHHHHHHCTTCEEEEEEC
T ss_pred hcCEEEEeeeeecCCCCcccHHHHHHHHHHhcCcCceEEEECC
Confidence 46799999999974 3345555555555555677776663
No 388
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=94.79 E-value=0.012 Score=48.27 Aligned_cols=22 Identities=32% Similarity=0.584 Sum_probs=20.6
Q ss_pred EEEeCCCCccHHHHHHHHHHHH
Q 017884 77 LLLYGPPGTGKTSTILAVARKL 98 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l 98 (364)
++|.||+|+|||+++..+++..
T Consensus 37 ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 37 VLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp EEEECCCTTTTHHHHHHHHTTT
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 8999999999999999999874
No 389
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=94.78 E-value=0.16 Score=40.88 Aligned_cols=22 Identities=32% Similarity=0.329 Sum_probs=20.0
Q ss_pred EEEeCCCCccHHHHHHHHHHHH
Q 017884 77 LLLYGPPGTGKTSTILAVARKL 98 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l 98 (364)
+++.|++|+|||+++..+...-
T Consensus 25 i~v~G~~~~GKSsli~~l~~~~ 46 (188)
T 1zd9_A 25 LTLVGLQYSGKTTFVNVIASGQ 46 (188)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 8999999999999999998653
No 390
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=94.75 E-value=0.086 Score=42.70 Aligned_cols=22 Identities=27% Similarity=0.472 Sum_probs=20.0
Q ss_pred EEEeCCCCccHHHHHHHHHHHH
Q 017884 77 LLLYGPPGTGKTSTILAVARKL 98 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l 98 (364)
+++.|++|+|||+++..+...-
T Consensus 26 i~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 26 VCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEECTTSSHHHHHHHHHHCC
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 8999999999999999998653
No 391
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=94.75 E-value=0.12 Score=48.90 Aligned_cols=120 Identities=16% Similarity=0.173 Sum_probs=65.4
Q ss_pred cHHHHHHHHHHHhcCCCCcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeCCCCCChHHHHHHHHHHHhcCccc-c
Q 017884 58 HRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFS-F 136 (364)
Q Consensus 58 ~~~~~~~l~~~~~~~~~~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~ 136 (364)
|.+.+..+......+ .+.++.-+.|+|||..+-.++..+...+....++-+.... -...+.+.+..+....... +
T Consensus 42 Q~~~v~~l~~~~~~~--~~~ilad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~~--l~~qw~~e~~~~~~~~~v~~~ 117 (500)
T 1z63_A 42 QIKGFSWMRFMNKLG--FGICLADDMGLGKTLQTIAVFSDAKKENELTPSLVICPLS--VLKNWEEELSKFAPHLRFAVF 117 (500)
T ss_dssp HHHHHHHHHHHHHTT--CCEEECCCTTSCHHHHHHHHHHHHHHTTCCSSEEEEECST--THHHHHHHHHHHCTTSCEEEC
T ss_pred HHHHHHHHHHHhhCC--CCEEEEeCCCCcHHHHHHHHHHHHHhcCCCCCEEEEccHH--HHHHHHHHHHHHCCCceEEEE
Confidence 344444443333433 3588999999999999888877765433333444444422 3455666565553211110 0
Q ss_pred -CC--------------------------ccceEEEEEeCCCCCCHHHHHHHHHHHHHhccCccEEEEeeccc
Q 017884 137 -GV--------------------------KASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVN 182 (364)
Q Consensus 137 -~~--------------------------~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~ 182 (364)
+. .....+||+||+|.+.... ....+.+...+...++.+++++..
T Consensus 118 ~g~~~~~~~~~~~ivi~t~~~l~~~~~l~~~~~~~vIvDEaH~~kn~~-~~~~~~l~~l~~~~~l~LTaTP~~ 189 (500)
T 1z63_A 118 HEDRSKIKLEDYDIILTTYAVLLRDTRLKEVEWKYIVIDEAQNIKNPQ-TKIFKAVKELKSKYRIALTGTPIE 189 (500)
T ss_dssp SSSTTSCCGGGSSEEEEEHHHHTTCHHHHTCCEEEEEEETGGGGSCTT-SHHHHHHHTSCEEEEEEECSSCST
T ss_pred ecCchhccccCCcEEEeeHHHHhccchhcCCCcCEEEEeCccccCCHh-HHHHHHHHhhccCcEEEEecCCCC
Confidence 00 0135799999999995332 123344444444455666655443
No 392
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=94.73 E-value=0.051 Score=45.06 Aligned_cols=21 Identities=38% Similarity=0.586 Sum_probs=18.8
Q ss_pred EEEeCCCCccHHHHHHHHHHH
Q 017884 77 LLLYGPPGTGKTSTILAVARK 97 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~ 97 (364)
+++.|++|+|||+++..+...
T Consensus 37 i~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 37 VVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEECTTSSHHHHHHHHHC-
T ss_pred EEEECcCCCCHHHHHHHHHcC
Confidence 899999999999999999754
No 393
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=94.72 E-value=0.059 Score=44.12 Aligned_cols=23 Identities=30% Similarity=0.491 Sum_probs=20.4
Q ss_pred cEEEeCCCCccHHHHHHHHHHHH
Q 017884 76 HLLLYGPPGTGKTSTILAVARKL 98 (364)
Q Consensus 76 ~lll~G~~G~GKt~la~~l~~~l 98 (364)
.+++.|++|+|||+++..+...-
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 38999999999999999998754
No 394
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=94.72 E-value=0.032 Score=45.37 Aligned_cols=23 Identities=22% Similarity=0.365 Sum_probs=20.5
Q ss_pred cEEEeCCCCccHHHHHHHHHHHH
Q 017884 76 HLLLYGPPGTGKTSTILAVARKL 98 (364)
Q Consensus 76 ~lll~G~~G~GKt~la~~l~~~l 98 (364)
.+++.|++|+|||+++..+...-
T Consensus 20 ki~v~G~~~~GKssli~~l~~~~ 42 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYANDA 42 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 38999999999999999998764
No 395
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=94.70 E-value=0.17 Score=44.67 Aligned_cols=38 Identities=21% Similarity=0.316 Sum_probs=23.7
Q ss_pred ceEEEEEeCCCCCCHHH-HHHHHHHHHHhccCccEEEEe
Q 017884 141 SVKLVLLDEADAMTKDA-QFALRRVIEKYTKNTRFALIC 178 (364)
Q Consensus 141 ~~~viiiDe~~~l~~~~-~~~L~~~le~~~~~~~~Il~~ 178 (364)
...+||+||+|.+.... ...+..++...+....+++.|
T Consensus 129 ~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~~~~S 167 (337)
T 2z0m_A 129 SFEIVIIDEADLMFEMGFIDDIKIILAQTSNRKITGLFS 167 (337)
T ss_dssp GCSEEEEESHHHHHHTTCHHHHHHHHHHCTTCSEEEEEE
T ss_pred hCcEEEEEChHHhhccccHHHHHHHHhhCCcccEEEEEe
Confidence 46799999999885432 334455555555555555544
No 396
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=94.70 E-value=0.034 Score=54.40 Aligned_cols=40 Identities=33% Similarity=0.478 Sum_probs=29.3
Q ss_pred cHHHHHHHHHHHhcCCCCcEEEeCCCCccHHHHHHHHHHHHcC
Q 017884 58 HRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYG 100 (364)
Q Consensus 58 ~~~~~~~l~~~~~~~~~~~lll~G~~G~GKt~la~~l~~~l~~ 100 (364)
.+.....+...+. .+..++.||||||||+++..+...+..
T Consensus 182 n~~Q~~av~~~l~---~~~~li~GppGTGKT~~~~~~i~~l~~ 221 (624)
T 2gk6_A 182 NHSQVYAVKTVLQ---RPLSLIQGPPGTGKTVTSATIVYHLAR 221 (624)
T ss_dssp CHHHHHHHHHHHT---CSEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHhc---CCCeEEECCCCCCHHHHHHHHHHHHHH
Confidence 4555556665553 245799999999999998888877653
No 397
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=94.69 E-value=0.028 Score=49.57 Aligned_cols=23 Identities=35% Similarity=0.514 Sum_probs=21.5
Q ss_pred cEEEeCCCCccHHHHHHHHHHHH
Q 017884 76 HLLLYGPPGTGKTSTILAVARKL 98 (364)
Q Consensus 76 ~lll~G~~G~GKt~la~~l~~~l 98 (364)
.+.|+||+|+||||+++.++..+
T Consensus 128 ~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 128 CLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhhhc
Confidence 37999999999999999999987
No 398
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=94.67 E-value=0.019 Score=48.00 Aligned_cols=20 Identities=35% Similarity=0.448 Sum_probs=19.1
Q ss_pred EEEeCCCCccHHHHHHHHHH
Q 017884 77 LLLYGPPGTGKTSTILAVAR 96 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~ 96 (364)
+.|.|++|+||||+++.++.
T Consensus 7 I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 7 VALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEECCTTSCHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 79999999999999999987
No 399
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=94.62 E-value=0.18 Score=41.30 Aligned_cols=22 Identities=18% Similarity=0.404 Sum_probs=19.4
Q ss_pred cEEEeCCCCccHHHHHHHHHHH
Q 017884 76 HLLLYGPPGTGKTSTILAVARK 97 (364)
Q Consensus 76 ~lll~G~~G~GKt~la~~l~~~ 97 (364)
.+.|.|++|+||||+++.++..
T Consensus 28 ~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 28 EVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp EEEEEECTTSSHHHHHTTTCCC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3899999999999999988654
No 400
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=94.61 E-value=0.14 Score=53.41 Aligned_cols=38 Identities=18% Similarity=0.327 Sum_probs=25.6
Q ss_pred ceEEEEEeCCCCCCHHH-HHHHHHHHHHhccCccEEEEe
Q 017884 141 SVKLVLLDEADAMTKDA-QFALRRVIEKYTKNTRFALIC 178 (364)
Q Consensus 141 ~~~viiiDe~~~l~~~~-~~~L~~~le~~~~~~~~Il~~ 178 (364)
...+|||||+|.+.... ...+..++...+.+..+|+.|
T Consensus 290 ~l~lVVIDEaH~l~d~~rg~~~e~ii~~l~~~~qvl~lS 328 (1108)
T 3l9o_A 290 EVAWVIFDEVHYMRDKERGVVWEETIILLPDKVRYVFLS 328 (1108)
T ss_dssp HEEEEEEETGGGTTSHHHHHHHHHHHHHSCTTSEEEEEE
T ss_pred cCCEEEEhhhhhccccchHHHHHHHHHhcCCCceEEEEc
Confidence 47899999999997543 333444555556667666665
No 401
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=94.58 E-value=0.022 Score=48.66 Aligned_cols=22 Identities=18% Similarity=0.283 Sum_probs=20.7
Q ss_pred EEEeCCCCccHHHHHHHHHHHH
Q 017884 77 LLLYGPPGTGKTSTILAVARKL 98 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l 98 (364)
+.|.||.|+||||+++.++..+
T Consensus 28 igI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 28 IGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999999876
No 402
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=94.57 E-value=0.044 Score=48.55 Aligned_cols=23 Identities=22% Similarity=0.297 Sum_probs=21.3
Q ss_pred EEEeCCCCccHHHHHHHHHHHHc
Q 017884 77 LLLYGPPGTGKTSTILAVARKLY 99 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l~ 99 (364)
+.|.||+|+||||+++.++..+.
T Consensus 83 igI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 83 ISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHh
Confidence 79999999999999999999874
No 403
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=94.56 E-value=0.011 Score=50.21 Aligned_cols=21 Identities=43% Similarity=0.512 Sum_probs=18.8
Q ss_pred EEEeCCCCccHHHHHHHHHHH
Q 017884 77 LLLYGPPGTGKTSTILAVARK 97 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~ 97 (364)
++|+|+||+|||+++..++..
T Consensus 33 ~~i~G~pG~GKT~l~l~~~~~ 53 (251)
T 2zts_A 33 VLLTGGTGTGKTTFAAQFIYK 53 (251)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHH
Confidence 799999999999999887654
No 404
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=94.56 E-value=0.012 Score=49.72 Aligned_cols=22 Identities=32% Similarity=0.526 Sum_probs=14.4
Q ss_pred EEEeCCCCccHHHHHHHHH-HHH
Q 017884 77 LLLYGPPGTGKTSTILAVA-RKL 98 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~-~~l 98 (364)
+.|.||+|+||||+++.++ ..+
T Consensus 30 i~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 30 LVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp EEEECSCC----CHHHHHHC---
T ss_pred EEEECCCCCCHHHHHHHHHhcCC
Confidence 7999999999999999999 764
No 405
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=94.48 E-value=0.21 Score=40.75 Aligned_cols=22 Identities=27% Similarity=0.537 Sum_probs=19.1
Q ss_pred cEEEeCCCCccHHHHHHHHHHH
Q 017884 76 HLLLYGPPGTGKTSTILAVARK 97 (364)
Q Consensus 76 ~lll~G~~G~GKt~la~~l~~~ 97 (364)
.+++.|++|+|||+++..+...
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 3899999999999999999754
No 406
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=94.47 E-value=0.024 Score=50.38 Aligned_cols=24 Identities=21% Similarity=0.221 Sum_probs=21.8
Q ss_pred EEEeCCCCccHHHHHHHHHHHHcC
Q 017884 77 LLLYGPPGTGKTSTILAVARKLYG 100 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l~~ 100 (364)
+.|.||+|+||||+++.++..+..
T Consensus 93 vgI~G~sGsGKSTL~~~L~gll~~ 116 (312)
T 3aez_A 93 IGVAGSVAVGKSTTARVLQALLAR 116 (312)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHT
T ss_pred EEEECCCCchHHHHHHHHHhhccc
Confidence 689999999999999999998753
No 407
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=94.45 E-value=0.036 Score=53.25 Aligned_cols=44 Identities=16% Similarity=0.186 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHh--cCCCCcEEEeCCCCccHHHHHHHHHHHHcCCC
Q 017884 59 RDIVDTIDRLTS--ENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 102 (364)
Q Consensus 59 ~~~~~~l~~~~~--~~~~~~lll~G~~G~GKt~la~~l~~~l~~~~ 102 (364)
+++...++.... ......++|.|++|+||||+++.+++.+...+
T Consensus 355 ~eV~~~lr~~~~~~~~~~~~I~l~G~~GsGKSTia~~La~~L~~~G 400 (546)
T 2gks_A 355 PEVAEILAETYVPKHKQGFCVWLTGLPCAGKSTIAEILATMLQARG 400 (546)
T ss_dssp HHHHHHHHHHSCCGGGCCEEEEEECSTTSSHHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHhhccccccceEEEccCCCCCCHHHHHHHHHHHhhhcC
Confidence 456666666652 22222379999999999999999999875444
No 408
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=94.43 E-value=0.044 Score=45.66 Aligned_cols=21 Identities=38% Similarity=0.471 Sum_probs=18.3
Q ss_pred EEEeCCCCccHHHHHHHHHHH
Q 017884 77 LLLYGPPGTGKTSTILAVARK 97 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~ 97 (364)
+++.|++|+|||+++..+...
T Consensus 18 i~v~G~~~~GKSsli~~~~~~ 38 (221)
T 3gj0_A 18 LVLVGDGGTGKTTFVKRHLTG 38 (221)
T ss_dssp EEEEECTTSSHHHHHTTBHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 899999999999999995443
No 409
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=94.42 E-value=0.41 Score=39.34 Aligned_cols=21 Identities=33% Similarity=0.532 Sum_probs=19.2
Q ss_pred EEEeCCCCccHHHHHHHHHHH
Q 017884 77 LLLYGPPGTGKTSTILAVARK 97 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~ 97 (364)
++|.|++|+|||+++..+...
T Consensus 28 i~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 28 LLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEESCTTSSHHHHHHHHHCS
T ss_pred EEEECcCCCCHHHHHHHHhcC
Confidence 899999999999999998754
No 410
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=94.40 E-value=0.025 Score=51.31 Aligned_cols=35 Identities=20% Similarity=0.354 Sum_probs=27.2
Q ss_pred HHHHHHHhcCCCCcEEEeCCCCccHHHHHHHHHHHHc
Q 017884 63 DTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLY 99 (364)
Q Consensus 63 ~~l~~~~~~~~~~~lll~G~~G~GKt~la~~l~~~l~ 99 (364)
..+.-.+..+ ..++|.||+|+||||++++++..+.
T Consensus 166 ~~l~~~i~~G--~~i~ivG~sGsGKSTll~~l~~~~~ 200 (361)
T 2gza_A 166 SFLRRAVQLE--RVIVVAGETGSGKTTLMKALMQEIP 200 (361)
T ss_dssp HHHHHHHHTT--CCEEEEESSSSCHHHHHHHHHTTSC
T ss_pred HHHHHHHhcC--CEEEEECCCCCCHHHHHHHHHhcCC
Confidence 4444455555 3589999999999999999998763
No 411
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=94.37 E-value=0.053 Score=44.39 Aligned_cols=22 Identities=23% Similarity=0.353 Sum_probs=4.1
Q ss_pred cEEEeCCCCccHHHHHHHHHHH
Q 017884 76 HLLLYGPPGTGKTSTILAVARK 97 (364)
Q Consensus 76 ~lll~G~~G~GKt~la~~l~~~ 97 (364)
.+++.|++|+|||+++..+...
T Consensus 22 ~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 22 KVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEC-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3899999999999999998765
No 412
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=94.31 E-value=0.023 Score=49.50 Aligned_cols=23 Identities=30% Similarity=0.410 Sum_probs=21.1
Q ss_pred EEEeCCCCccHHHHHHHHHHHHc
Q 017884 77 LLLYGPPGTGKTSTILAVARKLY 99 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l~ 99 (364)
++|+||+|+|||+++..++..+.
T Consensus 33 ~~i~G~~GsGKTtl~~~l~~~~~ 55 (279)
T 1nlf_A 33 GALVSPGGAGKSMLALQLAAQIA 55 (279)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHHh
Confidence 79999999999999999998664
No 413
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=94.30 E-value=0.43 Score=44.05 Aligned_cols=28 Identities=32% Similarity=0.383 Sum_probs=23.8
Q ss_pred EEEeCCCCccHHHHHHHHHHHHcCCCCC
Q 017884 77 LLLYGPPGTGKTSTILAVARKLYGAQYH 104 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l~~~~~~ 104 (364)
+.+.|++|+||||++..++..+...+..
T Consensus 101 i~i~G~~GsGKTT~~~~LA~~l~~~g~~ 128 (425)
T 2ffh_A 101 WFLVGLQGSGKTTTAAKLALYYKGKGRR 128 (425)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHTTTCC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCe
Confidence 6888999999999999999998655443
No 414
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=94.22 E-value=0.065 Score=48.35 Aligned_cols=27 Identities=33% Similarity=0.464 Sum_probs=22.7
Q ss_pred CcEEEeCCCCccHHHHHHHHHHHHcCC
Q 017884 75 PHLLLYGPPGTGKTSTILAVARKLYGA 101 (364)
Q Consensus 75 ~~lll~G~~G~GKt~la~~l~~~l~~~ 101 (364)
+.+.|.|+||+||||+..++...+...
T Consensus 75 ~~v~lvG~pgaGKSTLln~L~~~~~~~ 101 (349)
T 2www_A 75 FRVGLSGPPGAGKSTFIEYFGKMLTER 101 (349)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhhhc
Confidence 347999999999999999999876433
No 415
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=94.20 E-value=0.01 Score=52.15 Aligned_cols=23 Identities=13% Similarity=0.304 Sum_probs=18.3
Q ss_pred EEEeCCCCccHHHHHHHHHHHHc
Q 017884 77 LLLYGPPGTGKTSTILAVARKLY 99 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l~ 99 (364)
+.|.|++|+||||+++.++..+.
T Consensus 8 IgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 8 ISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp EEEESCC---CCTHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHh
Confidence 79999999999999999999764
No 416
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=94.19 E-value=0.037 Score=46.85 Aligned_cols=23 Identities=22% Similarity=0.566 Sum_probs=21.4
Q ss_pred cEEEeCCCCccHHHHHHHHHHHH
Q 017884 76 HLLLYGPPGTGKTSTILAVARKL 98 (364)
Q Consensus 76 ~lll~G~~G~GKt~la~~l~~~l 98 (364)
.+.|.|++|+||||+++.++..+
T Consensus 18 ~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 18 QIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 37999999999999999999987
No 417
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=94.17 E-value=0.036 Score=45.59 Aligned_cols=28 Identities=25% Similarity=0.322 Sum_probs=23.9
Q ss_pred EEEeCCCCccHHHHHHHHHHHHcCCCCC
Q 017884 77 LLLYGPPGTGKTSTILAVARKLYGAQYH 104 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l~~~~~~ 104 (364)
+.|.|+.|+||||.++.+++.+...+..
T Consensus 3 I~~EG~DGsGKsTq~~~L~~~L~~~g~~ 30 (197)
T 3hjn_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKK 30 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTTCC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCc
Confidence 4788999999999999999998765543
No 418
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=94.17 E-value=0.028 Score=51.22 Aligned_cols=24 Identities=33% Similarity=0.642 Sum_probs=21.8
Q ss_pred cEEEeCCCCccHHHHHHHHHHHHc
Q 017884 76 HLLLYGPPGTGKTSTILAVARKLY 99 (364)
Q Consensus 76 ~lll~G~~G~GKt~la~~l~~~l~ 99 (364)
.++|.||+|+||||+++.++..+.
T Consensus 138 ~i~ivG~~GsGKTTll~~l~~~~~ 161 (372)
T 2ewv_A 138 LILVTGPTGSGKSTTIASMIDYIN 161 (372)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhhcC
Confidence 379999999999999999999874
No 419
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=94.15 E-value=0.07 Score=43.65 Aligned_cols=22 Identities=23% Similarity=0.477 Sum_probs=20.0
Q ss_pred EEEeCCCCccHHHHHHHHHHHH
Q 017884 77 LLLYGPPGTGKTSTILAVARKL 98 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l 98 (364)
+++.|++|+|||+++..+...-
T Consensus 28 i~vvG~~~~GKSsli~~l~~~~ 49 (201)
T 2gco_A 28 LVIVGDGACGKTCLLIVFSKDQ 49 (201)
T ss_dssp EEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHHhCc
Confidence 8999999999999999998753
No 420
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=94.15 E-value=0.033 Score=53.50 Aligned_cols=42 Identities=24% Similarity=0.385 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHh--cCCCCcEEEeCCCCccHHHHHHHHHHHHcC
Q 017884 59 RDIVDTIDRLTS--ENRLPHLLLYGPPGTGKTSTILAVARKLYG 100 (364)
Q Consensus 59 ~~~~~~l~~~~~--~~~~~~lll~G~~G~GKt~la~~l~~~l~~ 100 (364)
+.+...++.... ......+.|.|++|+||||+++.++..+..
T Consensus 352 peV~~vLR~~~~~~~~~G~iI~LiG~sGSGKSTLar~La~~L~~ 395 (552)
T 3cr8_A 352 PEVLAELHRQTPPRERQGFTVFFTGLSGAGKSTLARALAARLME 395 (552)
T ss_dssp HHHHHHHHHHSCCGGGSCEEEEEEESSCHHHHHHHHHHHHHHHT
T ss_pred cchhhhhhhhcccccccceEEEEECCCCChHHHHHHHHHHhhcc
Confidence 345555554431 112233799999999999999999999853
No 421
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=94.13 E-value=0.023 Score=47.94 Aligned_cols=25 Identities=24% Similarity=0.352 Sum_probs=19.5
Q ss_pred EEEeCCCCccHHHHHHHHHHHHcCC
Q 017884 77 LLLYGPPGTGKTSTILAVARKLYGA 101 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l~~~ 101 (364)
++|.|++|+||||+++.+++.+...
T Consensus 28 I~~eG~~GsGKsT~~~~l~~~l~~~ 52 (227)
T 3v9p_A 28 ITFEGIDGAGKTTHLQWFCDRLQER 52 (227)
T ss_dssp EEEECCC---CHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhh
Confidence 7999999999999999999998543
No 422
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=94.13 E-value=0.041 Score=45.41 Aligned_cols=22 Identities=18% Similarity=0.283 Sum_probs=19.9
Q ss_pred EEEeCCCCccHHHHHHHHHHHH
Q 017884 77 LLLYGPPGTGKTSTILAVARKL 98 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l 98 (364)
+++.|++|+|||+++..+...-
T Consensus 12 i~i~G~~~~GKTsli~~l~~~~ 33 (212)
T 2j0v_A 12 CVTVGDGAVGKTCMLICYTSNK 33 (212)
T ss_dssp EEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 8999999999999999998653
No 423
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.12 E-value=0.1 Score=42.89 Aligned_cols=22 Identities=27% Similarity=0.588 Sum_probs=19.9
Q ss_pred cEEEeCCCCccHHHHHHHHHHH
Q 017884 76 HLLLYGPPGTGKTSTILAVARK 97 (364)
Q Consensus 76 ~lll~G~~G~GKt~la~~l~~~ 97 (364)
.+++.|++|+|||+++..+...
T Consensus 22 ~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 22 KILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3899999999999999999864
No 424
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=94.11 E-value=0.03 Score=46.66 Aligned_cols=23 Identities=35% Similarity=0.567 Sum_probs=21.4
Q ss_pred cEEEeCCCCccHHHHHHHHHHHH
Q 017884 76 HLLLYGPPGTGKTSTILAVARKL 98 (364)
Q Consensus 76 ~lll~G~~G~GKt~la~~l~~~l 98 (364)
.+.|.|++|+|||++++.+++.+
T Consensus 5 ~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 5 NIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 37999999999999999999986
No 425
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=94.09 E-value=0.027 Score=51.49 Aligned_cols=22 Identities=27% Similarity=0.614 Sum_probs=21.1
Q ss_pred EEEeCCCCccHHHHHHHHHHHH
Q 017884 77 LLLYGPPGTGKTSTILAVARKL 98 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l 98 (364)
++|.||+|+|||+++..+++.+
T Consensus 5 i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 5 IVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp EEEEECSSSSHHHHHHHHHHHH
T ss_pred EEEECcchhhHHHHHHHHHHHC
Confidence 6899999999999999999997
No 426
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=94.08 E-value=0.14 Score=49.75 Aligned_cols=42 Identities=7% Similarity=0.199 Sum_probs=30.4
Q ss_pred ceEEEEEeCC-CCCCHHHHHHHHHHHHHhcc-CccEEEEeeccc
Q 017884 141 SVKLVLLDEA-DAMTKDAQFALRRVIEKYTK-NTRFALICNQVN 182 (364)
Q Consensus 141 ~~~viiiDe~-~~l~~~~~~~L~~~le~~~~-~~~~Il~~~~~~ 182 (364)
+++++++||. ..|.......+.+++.+... ...+|++++...
T Consensus 239 ~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl~ 282 (608)
T 3j16_B 239 EADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLS 282 (608)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCHH
T ss_pred CCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 5789999995 55667778888888887654 344677775543
No 427
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=94.07 E-value=0.032 Score=45.01 Aligned_cols=23 Identities=26% Similarity=0.231 Sum_probs=21.2
Q ss_pred EEEeCCCCccHHHHHHHHHHHHc
Q 017884 77 LLLYGPPGTGKTSTILAVARKLY 99 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l~ 99 (364)
.+|+||.|+|||+++.++.-.+.
T Consensus 29 ~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 29 TAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EEEEECTTSSHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHHc
Confidence 69999999999999999998874
No 428
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=94.07 E-value=0.056 Score=43.29 Aligned_cols=21 Identities=38% Similarity=0.681 Sum_probs=8.7
Q ss_pred EEEeCCCCccHHHHHHHHHHH
Q 017884 77 LLLYGPPGTGKTSTILAVARK 97 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~ 97 (364)
+++.|++|+|||+++..+...
T Consensus 11 i~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 11 LLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEECCCCC------------
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 899999999999999998755
No 429
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=94.06 E-value=0.027 Score=49.44 Aligned_cols=23 Identities=17% Similarity=0.255 Sum_probs=21.3
Q ss_pred EEEeCCCCccHHHHHHHHHHHHc
Q 017884 77 LLLYGPPGTGKTSTILAVARKLY 99 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l~ 99 (364)
++|.||+|+|||+++..++..+.
T Consensus 38 ~~i~G~~G~GKTTl~~~ia~~~~ 60 (296)
T 1cr0_A 38 IMVTSGSGMGKSTFVRQQALQWG 60 (296)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHHHH
Confidence 79999999999999999998875
No 430
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=94.00 E-value=0.024 Score=48.12 Aligned_cols=42 Identities=12% Similarity=0.295 Sum_probs=30.1
Q ss_pred ceEEEEEeCC-CCCCHHHHHHHHHHHHHhcc--CccEEEEeeccc
Q 017884 141 SVKLVLLDEA-DAMTKDAQFALRRVIEKYTK--NTRFALICNQVN 182 (364)
Q Consensus 141 ~~~viiiDe~-~~l~~~~~~~L~~~le~~~~--~~~~Il~~~~~~ 182 (364)
+++++++||. ..|.......+.+++.+... ...+|++|+...
T Consensus 163 ~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~ 207 (235)
T 3tif_A 163 NPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDIN 207 (235)
T ss_dssp CCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHH
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHH
Confidence 5779999995 45567777888888877642 456777877654
No 431
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=93.99 E-value=0.058 Score=54.27 Aligned_cols=40 Identities=33% Similarity=0.500 Sum_probs=29.2
Q ss_pred cHHHHHHHHHHHhcCCCCcEEEeCCCCccHHHHHHHHHHHHcC
Q 017884 58 HRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYG 100 (364)
Q Consensus 58 ~~~~~~~l~~~~~~~~~~~lll~G~~G~GKt~la~~l~~~l~~ 100 (364)
.+.....+...+.. +..++.||||||||+++..++..+..
T Consensus 358 n~~Q~~Av~~~l~~---~~~lI~GppGTGKT~ti~~~i~~l~~ 397 (800)
T 2wjy_A 358 NHSQVYAVKTVLQR---PLSLIQGPPGTGKTVTSATIVYHLAR 397 (800)
T ss_dssp CHHHHHHHHHHHTS---SEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHhccC---CeEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 34555556555532 45799999999999998888877654
No 432
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=93.96 E-value=0.056 Score=49.60 Aligned_cols=38 Identities=16% Similarity=0.244 Sum_probs=28.7
Q ss_pred CCCcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeC
Q 017884 73 RLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNA 112 (364)
Q Consensus 73 ~~~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~ 112 (364)
..+|+++.|++|+|||++++.++..+...+. .++-++.
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~--~~~~~D~ 71 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQGS--RVIIIDP 71 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTTTC--CEEEEES
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHCCC--EEEEEeC
Confidence 3468999999999999999999988765443 3344444
No 433
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=93.96 E-value=0.37 Score=49.20 Aligned_cols=20 Identities=25% Similarity=0.360 Sum_probs=18.2
Q ss_pred EEEeCCCCccHHHHHHHHHH
Q 017884 77 LLLYGPPGTGKTSTILAVAR 96 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~ 96 (364)
++|.||.|+||||+++.++-
T Consensus 665 ~~ItGpNGsGKSTlLr~ial 684 (934)
T 3thx_A 665 HIITGPNMGGKSTYIRQTGV 684 (934)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 79999999999999999843
No 434
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=93.95 E-value=0.026 Score=49.31 Aligned_cols=20 Identities=35% Similarity=0.441 Sum_probs=18.9
Q ss_pred EEEeCCCCccHHHHHHHHHH
Q 017884 77 LLLYGPPGTGKTSTILAVAR 96 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~ 96 (364)
+.|.|++|+||||+++.++.
T Consensus 78 I~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 78 LGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp EEEEECTTSCHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 79999999999999999994
No 435
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=93.94 E-value=0.031 Score=47.60 Aligned_cols=42 Identities=17% Similarity=0.229 Sum_probs=29.9
Q ss_pred ceEEEEEeCC-CCCCHHHHHHHHHHHHHhcc--CccEEEEeeccc
Q 017884 141 SVKLVLLDEA-DAMTKDAQFALRRVIEKYTK--NTRFALICNQVN 182 (364)
Q Consensus 141 ~~~viiiDe~-~~l~~~~~~~L~~~le~~~~--~~~~Il~~~~~~ 182 (364)
+++++++||. ..|....+..+.+++.+... ...+|++|+...
T Consensus 144 ~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~ 188 (240)
T 2onk_A 144 QPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLI 188 (240)
T ss_dssp CCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHH
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 6789999995 55667778888888877632 455777776543
No 436
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=93.92 E-value=0.081 Score=51.46 Aligned_cols=42 Identities=19% Similarity=0.484 Sum_probs=30.8
Q ss_pred ceEEEEEeCCC-CCCHHHHHHHHHHHHHhccCccEEEEeeccc
Q 017884 141 SVKLVLLDEAD-AMTKDAQFALRRVIEKYTKNTRFALICNQVN 182 (364)
Q Consensus 141 ~~~viiiDe~~-~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~ 182 (364)
+++++++||.- .+.......+.+.+.+...+..+|++++...
T Consensus 501 ~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~ 543 (595)
T 2yl4_A 501 NPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHRLS 543 (595)
T ss_dssp CCSEEEEECCCSSCCHHHHHHHHHHHHHHHTTSEEEEECCCHH
T ss_pred CCCEEEEECcccCCCHHHHHHHHHHHHHHhcCCEEEEEecCHH
Confidence 57799999974 4566777788888887655556777876654
No 437
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=93.91 E-value=0.034 Score=45.53 Aligned_cols=22 Identities=27% Similarity=0.519 Sum_probs=20.1
Q ss_pred EEEeCCCCccHHHHHHHHHHHH
Q 017884 77 LLLYGPPGTGKTSTILAVARKL 98 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l 98 (364)
+.|.|++|+|||++++.+....
T Consensus 8 v~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 8 VVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 7999999999999999998764
No 438
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=93.90 E-value=0.031 Score=44.62 Aligned_cols=22 Identities=27% Similarity=0.451 Sum_probs=20.1
Q ss_pred cEEEeCCCCccHHHHHHHHHHH
Q 017884 76 HLLLYGPPGTGKTSTILAVARK 97 (364)
Q Consensus 76 ~lll~G~~G~GKt~la~~l~~~ 97 (364)
.++|.|++|+|||+++..+.+.
T Consensus 18 gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 18 GVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp EEEEEESSSSSHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHc
Confidence 3899999999999999999885
No 439
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=93.88 E-value=0.037 Score=48.88 Aligned_cols=24 Identities=29% Similarity=0.553 Sum_probs=21.8
Q ss_pred EEEeCCCCccHHHHHHHHHHHHcC
Q 017884 77 LLLYGPPGTGKTSTILAVARKLYG 100 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l~~ 100 (364)
+.|.||.|+||||+++.++..+..
T Consensus 103 i~lvG~nGsGKTTll~~Lag~l~~ 126 (302)
T 3b9q_A 103 IMIVGVNGGGKTTSLGKLAHRLKN 126 (302)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH
Confidence 689999999999999999998753
No 440
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=93.87 E-value=0.039 Score=53.26 Aligned_cols=23 Identities=26% Similarity=0.319 Sum_probs=21.7
Q ss_pred EEEeCCCCccHHHHHHHHHHHHc
Q 017884 77 LLLYGPPGTGKTSTILAVARKLY 99 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l~ 99 (364)
++|.|++|+||||+++.+++.+.
T Consensus 399 I~l~GlsGSGKSTiA~~La~~L~ 421 (573)
T 1m8p_A 399 IFLTGYMNSGKDAIARALQVTLN 421 (573)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEeecCCCCCHHHHHHHHHHHhc
Confidence 79999999999999999999985
No 441
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=93.85 E-value=0.04 Score=46.37 Aligned_cols=23 Identities=35% Similarity=0.593 Sum_probs=21.3
Q ss_pred EEEeCCCCccHHHHHHHHHHHHc
Q 017884 77 LLLYGPPGTGKTSTILAVARKLY 99 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l~ 99 (364)
+-|.|+||+||||.++.+++.+.
T Consensus 11 ~~~~G~pGsGKsT~a~~L~~~~g 33 (230)
T 3gmt_A 11 LILLGAPGAGKGTQANFIKEKFG 33 (230)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred eeeECCCCCCHHHHHHHHHHHhC
Confidence 78999999999999999999873
No 442
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=93.85 E-value=0.029 Score=47.65 Aligned_cols=23 Identities=17% Similarity=0.264 Sum_probs=21.4
Q ss_pred EEEeCCCCccHHHHHHHHHHHHc
Q 017884 77 LLLYGPPGTGKTSTILAVARKLY 99 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l~ 99 (364)
+.|.|++|+||||+++.+++.+.
T Consensus 5 i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 5 LSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEECTTSSHHHHHHHHHHHCT
T ss_pred EEEEcCCCCCHHHHHHHHHHHcC
Confidence 79999999999999999999973
No 443
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=93.84 E-value=0.058 Score=48.99 Aligned_cols=42 Identities=19% Similarity=0.252 Sum_probs=29.9
Q ss_pred HHhcCCCCcEEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEE
Q 017884 68 LTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILE 109 (364)
Q Consensus 68 ~~~~~~~~~lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~ 109 (364)
.+.-++...+.|.||+|+|||++++.+++.+...+....++.
T Consensus 168 ~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~~I~ 209 (422)
T 3ice_A 168 ASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMV 209 (422)
T ss_dssp HSCCBTTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSEEEE
T ss_pred eeeecCCcEEEEecCCCCChhHHHHHHHHHHhhcCCCeeEEE
Confidence 333444455899999999999999999998754444444443
No 444
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=93.79 E-value=0.032 Score=45.39 Aligned_cols=23 Identities=26% Similarity=0.570 Sum_probs=20.7
Q ss_pred EEEeCCCCccHHHHHHHHHHHHc
Q 017884 77 LLLYGPPGTGKTSTILAVARKLY 99 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l~ 99 (364)
+.|.|++|+|||++++.++....
T Consensus 32 v~lvG~~g~GKSTLl~~l~~~~~ 54 (191)
T 1oix_A 32 VVLIGDSGVGKSNLLSRFTRNEF 54 (191)
T ss_dssp EEEEECTTSSHHHHHHHHHHSCC
T ss_pred EEEECcCCCCHHHHHHHHhcCCC
Confidence 79999999999999999988653
No 445
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=93.74 E-value=0.033 Score=53.16 Aligned_cols=24 Identities=29% Similarity=0.384 Sum_probs=21.9
Q ss_pred EEEeCCCCccHHHHHHHHHHHHcC
Q 017884 77 LLLYGPPGTGKTSTILAVARKLYG 100 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l~~ 100 (364)
+++.|.||+||||+++.+++.+..
T Consensus 38 IvlvGlpGSGKSTia~~La~~L~~ 61 (520)
T 2axn_A 38 IVMVGLPARGKTYISKKLTRYLNW 61 (520)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHhh
Confidence 799999999999999999998743
No 446
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=93.74 E-value=0.026 Score=47.54 Aligned_cols=41 Identities=12% Similarity=0.206 Sum_probs=27.2
Q ss_pred ceEEEEEeCC-CCCCHHHHHHHHHHHHHhcc-CccEEEEeecc
Q 017884 141 SVKLVLLDEA-DAMTKDAQFALRRVIEKYTK-NTRFALICNQV 181 (364)
Q Consensus 141 ~~~viiiDe~-~~l~~~~~~~L~~~le~~~~-~~~~Il~~~~~ 181 (364)
+++++++||. ..|.......+.+++.+... ...+|++|+..
T Consensus 158 ~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~ 200 (224)
T 2pcj_A 158 EPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHER 200 (224)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 5778999985 44566777777777776532 44566666554
No 447
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=93.73 E-value=0.038 Score=46.18 Aligned_cols=25 Identities=32% Similarity=0.337 Sum_probs=22.5
Q ss_pred cEEEeCCCCccHHHHHHHHHHHHcC
Q 017884 76 HLLLYGPPGTGKTSTILAVARKLYG 100 (364)
Q Consensus 76 ~lll~G~~G~GKt~la~~l~~~l~~ 100 (364)
.++|.|++|+||||.++.+++.+..
T Consensus 7 ~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 7 LILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcc
Confidence 3799999999999999999999843
No 448
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=93.68 E-value=0.03 Score=47.60 Aligned_cols=43 Identities=14% Similarity=0.182 Sum_probs=29.4
Q ss_pred ceEEEEEeCC-CCCCHHHHHHHHHHHH---HhccCccEEEEeecccc
Q 017884 141 SVKLVLLDEA-DAMTKDAQFALRRVIE---KYTKNTRFALICNQVNK 183 (364)
Q Consensus 141 ~~~viiiDe~-~~l~~~~~~~L~~~le---~~~~~~~~Il~~~~~~~ 183 (364)
+++++++||. ..|.......+.+.+. .......+|++|.....
T Consensus 145 ~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~ 191 (237)
T 2cbz_A 145 NADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSY 191 (237)
T ss_dssp CCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTT
T ss_pred CCCEEEEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHH
Confidence 5789999996 4556677788888873 33334567777766543
No 449
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=93.66 E-value=0.031 Score=46.64 Aligned_cols=23 Identities=30% Similarity=0.517 Sum_probs=20.5
Q ss_pred cEEEeCCCCccHHHHHHHHHHHH
Q 017884 76 HLLLYGPPGTGKTSTILAVARKL 98 (364)
Q Consensus 76 ~lll~G~~G~GKt~la~~l~~~l 98 (364)
.+.|.||.|+||||+++.++..+
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37899999999999999998765
No 450
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=93.66 E-value=0.29 Score=48.84 Aligned_cols=23 Identities=26% Similarity=0.336 Sum_probs=20.4
Q ss_pred cEEEeCCCCccHHHHHHHHHHHH
Q 017884 76 HLLLYGPPGTGKTSTILAVARKL 98 (364)
Q Consensus 76 ~lll~G~~G~GKt~la~~l~~~l 98 (364)
.++|.||.|+||||+.+.++...
T Consensus 578 i~~I~GpNGsGKSTlLr~iagl~ 600 (765)
T 1ewq_A 578 LVLITGPNMAGKSTFLRQTALIA 600 (765)
T ss_dssp EEEEESCSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCChHHHHHHHHhhh
Confidence 37999999999999999998754
No 451
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=93.60 E-value=0.83 Score=40.12 Aligned_cols=21 Identities=38% Similarity=0.556 Sum_probs=18.9
Q ss_pred EEEeCCCCccHHHHHHHHHHH
Q 017884 77 LLLYGPPGTGKTSTILAVARK 97 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~ 97 (364)
+++.|++|+|||++...+...
T Consensus 6 I~lvG~~~vGKSSLi~~l~~~ 26 (307)
T 3r7w_A 6 LLLMGRSGSGKSSMRSIIFSN 26 (307)
T ss_dssp EEEECCTTSSHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 899999999999999997654
No 452
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=93.59 E-value=0.17 Score=49.87 Aligned_cols=41 Identities=20% Similarity=0.297 Sum_probs=29.1
Q ss_pred eEEEEEeCC-CCCCHHHHHHHHHHHHHhcc-CccEEEEeeccc
Q 017884 142 VKLVLLDEA-DAMTKDAQFALRRVIEKYTK-NTRFALICNQVN 182 (364)
Q Consensus 142 ~~viiiDe~-~~l~~~~~~~L~~~le~~~~-~~~~Il~~~~~~ 182 (364)
++++++||. ..|.......+.+++.+... ...+|+++....
T Consensus 565 p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~vtHd~~ 607 (670)
T 3ux8_A 565 RTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLD 607 (670)
T ss_dssp CEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 479999995 45667777778887776543 455777876654
No 453
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=93.59 E-value=0.15 Score=52.56 Aligned_cols=38 Identities=21% Similarity=0.407 Sum_probs=23.9
Q ss_pred ceEEEEEeCCCCCCHHH-HHHHHHHHHHhccCccEEEEe
Q 017884 141 SVKLVLLDEADAMTKDA-QFALRRVIEKYTKNTRFALIC 178 (364)
Q Consensus 141 ~~~viiiDe~~~l~~~~-~~~L~~~le~~~~~~~~Il~~ 178 (364)
...+|||||+|.+.... ...+..++...+.++.+|+.|
T Consensus 147 ~l~lvViDEaH~l~d~~~g~~~e~ii~~l~~~v~iIlLS 185 (997)
T 4a4z_A 147 DVEFVIFDEVHYVNDQDRGVVWEEVIIMLPQHVKFILLS 185 (997)
T ss_dssp GEEEEEECCTTCCCTTCTTCCHHHHHHHSCTTCEEEEEE
T ss_pred CCCEEEEECcccccccchHHHHHHHHHhcccCCCEEEEc
Confidence 57899999999986431 122334444455566666655
No 454
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=93.57 E-value=0.087 Score=56.00 Aligned_cols=42 Identities=19% Similarity=0.413 Sum_probs=29.3
Q ss_pred ceEEEEEeCCCC-CCHHHHHHHHHHHHHhccCccEEEEeeccc
Q 017884 141 SVKLVLLDEADA-MTKDAQFALRRVIEKYTKNTRFALICNQVN 182 (364)
Q Consensus 141 ~~~viiiDe~~~-l~~~~~~~L~~~le~~~~~~~~Il~~~~~~ 182 (364)
+++++++||.-. +.......+.+.+.....+..+|++++..+
T Consensus 544 ~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~ 586 (1284)
T 3g5u_A 544 NPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLS 586 (1284)
T ss_dssp CCSEEEEESTTCSSCHHHHHHHHHHHHHHHTTSEEEEECSCHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHcCCCEEEEEecCHH
Confidence 578999999744 455566667777776655666778886544
No 455
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=93.56 E-value=0.07 Score=53.73 Aligned_cols=38 Identities=32% Similarity=0.537 Sum_probs=26.7
Q ss_pred cHHHHHHHHHHHhcCCCCcEEEeCCCCccHHHHHHHHHHHH
Q 017884 58 HRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKL 98 (364)
Q Consensus 58 ~~~~~~~l~~~~~~~~~~~lll~G~~G~GKt~la~~l~~~l 98 (364)
.+.....+...+. .+.+++.||||||||+++..+...+
T Consensus 362 n~~Q~~Av~~~l~---~~~~lI~GppGTGKT~~i~~~i~~l 399 (802)
T 2xzl_A 362 NSSQSNAVSHVLQ---RPLSLIQGPPGTGKTVTSATIVYHL 399 (802)
T ss_dssp CHHHHHHHHHHTT---CSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhc---CCCEEEECCCCCCHHHHHHHHHHHH
Confidence 3455555555543 2457999999999999887776554
No 456
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=93.53 E-value=0.037 Score=44.69 Aligned_cols=21 Identities=24% Similarity=0.360 Sum_probs=19.1
Q ss_pred EEEeCCCCccHHHHHHHHHHH
Q 017884 77 LLLYGPPGTGKTSTILAVARK 97 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~ 97 (364)
++++|++|+|||++|..++..
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 589999999999999999865
No 457
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=93.53 E-value=0.034 Score=44.83 Aligned_cols=20 Identities=30% Similarity=0.662 Sum_probs=18.7
Q ss_pred EEEeCCCCccHHHHHHHHHH
Q 017884 77 LLLYGPPGTGKTSTILAVAR 96 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~ 96 (364)
+++.|++|+|||++++.++.
T Consensus 5 v~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 5 LMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEESCTTSSHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 79999999999999999976
No 458
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=93.47 E-value=0.042 Score=47.69 Aligned_cols=23 Identities=17% Similarity=0.439 Sum_probs=20.7
Q ss_pred EEEeCCCCccHHHHHHHHHHHHc
Q 017884 77 LLLYGPPGTGKTSTILAVARKLY 99 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l~ 99 (364)
+.|.||+|+||||+++.++....
T Consensus 5 v~lvG~nGaGKSTLln~L~g~~~ 27 (270)
T 3sop_A 5 IMVVGQSGLGKSTLVNTLFKSQV 27 (270)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHhCCCC
Confidence 68999999999999999998763
No 459
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=93.47 E-value=0.043 Score=43.35 Aligned_cols=21 Identities=29% Similarity=0.537 Sum_probs=19.2
Q ss_pred EEEeCCCCccHHHHHHHHHHH
Q 017884 77 LLLYGPPGTGKTSTILAVARK 97 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~ 97 (364)
+.+.|++|+|||++++++...
T Consensus 6 v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 6 IALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 799999999999999999763
No 460
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=93.45 E-value=0.034 Score=47.97 Aligned_cols=23 Identities=17% Similarity=0.330 Sum_probs=20.5
Q ss_pred cEEEeCCCCccHHHHHHHHHHHH
Q 017884 76 HLLLYGPPGTGKTSTILAVARKL 98 (364)
Q Consensus 76 ~lll~G~~G~GKt~la~~l~~~l 98 (364)
.+.|.||.|+||||+++.++..+
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37899999999999999998765
No 461
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=93.44 E-value=0.058 Score=42.89 Aligned_cols=23 Identities=26% Similarity=0.423 Sum_probs=20.4
Q ss_pred CcEEEeCCCCccHHHHHHHHHHH
Q 017884 75 PHLLLYGPPGTGKTSTILAVARK 97 (364)
Q Consensus 75 ~~lll~G~~G~GKt~la~~l~~~ 97 (364)
..+++.|++|+|||+++..+...
T Consensus 9 ~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 9 PVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CEEEEESCTTTTHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 45899999999999999999764
No 462
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=93.43 E-value=0.28 Score=47.80 Aligned_cols=38 Identities=13% Similarity=0.132 Sum_probs=22.8
Q ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHHHhc-cCccEEEEe
Q 017884 141 SVKLVLLDEADAMTKDAQFALRRVIEKYT-KNTRFALIC 178 (364)
Q Consensus 141 ~~~viiiDe~~~l~~~~~~~L~~~le~~~-~~~~~Il~~ 178 (364)
..++|||||+|.+.......+..+++..+ .+..+|+.|
T Consensus 277 ~~~~iViDEah~~~~~~~~~~~~i~~~l~~~~~q~il~S 315 (618)
T 2whx_A 277 NYNLIVMDEAHFTDPCSVAARGYISTRVEMGEAAAIFMT 315 (618)
T ss_dssp CCSEEEEESTTCCSHHHHHHHHHHHHHHHHTSCEEEEEC
T ss_pred CCeEEEEECCCCCCccHHHHHHHHHHHhcccCccEEEEE
Confidence 46799999999996543333333333322 455666555
No 463
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=93.43 E-value=0.22 Score=46.73 Aligned_cols=24 Identities=25% Similarity=0.379 Sum_probs=17.8
Q ss_pred CcEEEeCCCCccHHHH-HHHHHHHH
Q 017884 75 PHLLLYGPPGTGKTST-ILAVARKL 98 (364)
Q Consensus 75 ~~lll~G~~G~GKt~l-a~~l~~~l 98 (364)
.++++.||+|+|||.. +..+...+
T Consensus 22 ~~vlv~a~TGsGKT~~~~l~il~~~ 46 (459)
T 2z83_A 22 QMTVLDLHPGSGKTRKILPQIIKDA 46 (459)
T ss_dssp CEEEECCCTTSCTTTTHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHH
Confidence 4589999999999986 44444443
No 464
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=93.43 E-value=0.21 Score=54.56 Aligned_cols=30 Identities=17% Similarity=0.313 Sum_probs=21.5
Q ss_pred HHHHHHhcCCCCcEEEeCCCCccHHHHHHHHH
Q 017884 64 TIDRLTSENRLPHLLLYGPPGTGKTSTILAVA 95 (364)
Q Consensus 64 ~l~~~~~~~~~~~lll~G~~G~GKt~la~~l~ 95 (364)
.+...+..+ .++++.+|+|+|||.++....
T Consensus 934 ~~~~l~~~~--~nvlv~APTGSGKTliaelai 963 (1724)
T 4f92_B 934 VFNTVYNSD--DNVFVGAPTGSGKTICAEFAI 963 (1724)
T ss_dssp HHHHHHSCC--SCEEEECCTTSCCHHHHHHHH
T ss_pred HHHHHhcCC--CcEEEEeCCCCCchHHHHHHH
Confidence 344444444 469999999999999886543
No 465
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=93.36 E-value=0.076 Score=45.46 Aligned_cols=35 Identities=26% Similarity=0.442 Sum_probs=28.0
Q ss_pred EEEeCCCCccHHHHHHHHHHHHcCCCCCCcEEEEeC
Q 017884 77 LLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNA 112 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~ 112 (364)
+++.|.+|+||||++..++..+. .+....++..+.
T Consensus 17 ~~~~GkgGvGKTTl~~~La~~l~-~g~~v~vvd~D~ 51 (262)
T 1yrb_A 17 VVFVGTAGSGKTTLTGEFGRYLE-DNYKVAYVNLDT 51 (262)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHT-TTSCEEEEECCS
T ss_pred EEEeCCCCCCHHHHHHHHHHHHH-CCCeEEEEeCCC
Confidence 69999999999999999999987 665555555443
No 466
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=93.35 E-value=0.22 Score=46.82 Aligned_cols=21 Identities=19% Similarity=0.457 Sum_probs=18.3
Q ss_pred EEEeCCCCccHHHHHHHHHHH
Q 017884 77 LLLYGPPGTGKTSTILAVARK 97 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~ 97 (364)
+.|.|+||+|||+++.++...
T Consensus 236 V~ivG~~nvGKSSLln~L~~~ 256 (476)
T 3gee_A 236 TVIAGKPNAGKSTLLNTLLGQ 256 (476)
T ss_dssp EEEECCTTSSHHHHHHHCC--
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 899999999999999998765
No 467
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=93.34 E-value=0.047 Score=43.25 Aligned_cols=22 Identities=45% Similarity=0.638 Sum_probs=19.5
Q ss_pred cEEEeCCCCccHHHHHHHHHHH
Q 017884 76 HLLLYGPPGTGKTSTILAVARK 97 (364)
Q Consensus 76 ~lll~G~~G~GKt~la~~l~~~ 97 (364)
.+++.|++|+|||++++++...
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCccHHHHHHHHhcC
Confidence 3899999999999999998754
No 468
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=93.34 E-value=0.044 Score=46.95 Aligned_cols=42 Identities=19% Similarity=0.182 Sum_probs=30.4
Q ss_pred ceEEEEEeCC-CCCCHHHHHHHHHHHHHhcc-CccEEEEeeccc
Q 017884 141 SVKLVLLDEA-DAMTKDAQFALRRVIEKYTK-NTRFALICNQVN 182 (364)
Q Consensus 141 ~~~viiiDe~-~~l~~~~~~~L~~~le~~~~-~~~~Il~~~~~~ 182 (364)
+++++++||. ..|.......+.+++.+... ...+|++|+...
T Consensus 161 ~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~ 204 (250)
T 2d2e_A 161 EPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQR 204 (250)
T ss_dssp CCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSG
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHH
Confidence 5779999995 45667778888888887743 445777776544
No 469
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=93.31 E-value=0.038 Score=47.14 Aligned_cols=23 Identities=26% Similarity=0.470 Sum_probs=20.6
Q ss_pred cEEEeCCCCccHHHHHHHHHHHH
Q 017884 76 HLLLYGPPGTGKTSTILAVARKL 98 (364)
Q Consensus 76 ~lll~G~~G~GKt~la~~l~~~l 98 (364)
.+.|.||.|+||||+++.++..+
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37999999999999999998765
No 470
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=93.31 E-value=0.038 Score=49.93 Aligned_cols=23 Identities=30% Similarity=0.436 Sum_probs=20.7
Q ss_pred cEEEeCCCCccHHHHHHHHHHHH
Q 017884 76 HLLLYGPPGTGKTSTILAVARKL 98 (364)
Q Consensus 76 ~lll~G~~G~GKt~la~~l~~~l 98 (364)
.+.|.||+|+||||+++.++..+
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 37899999999999999999865
No 471
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=93.30 E-value=0.76 Score=46.79 Aligned_cols=21 Identities=38% Similarity=0.477 Sum_probs=18.8
Q ss_pred EEEeCCCCccHHHHHHHHHHH
Q 017884 77 LLLYGPPGTGKTSTILAVARK 97 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~ 97 (364)
++|.||.|+||||+.+.++..
T Consensus 676 ~~ItGPNGaGKSTlLr~i~~i 696 (918)
T 3thx_B 676 MIITGPNMGGKSSYIKQVALI 696 (918)
T ss_dssp EEEESCCCHHHHHHHHHHHHH
T ss_pred EEEECCCCCchHHHHHHHHHH
Confidence 799999999999999988743
No 472
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=93.30 E-value=0.045 Score=47.37 Aligned_cols=42 Identities=17% Similarity=0.288 Sum_probs=30.8
Q ss_pred ceEEEEEeCC-CCCCHHHHHHHHHHHHHhcc-CccEEEEeeccc
Q 017884 141 SVKLVLLDEA-DAMTKDAQFALRRVIEKYTK-NTRFALICNQVN 182 (364)
Q Consensus 141 ~~~viiiDe~-~~l~~~~~~~L~~~le~~~~-~~~~Il~~~~~~ 182 (364)
+++++++||. ..|.......+.+++.+... ...+|++|....
T Consensus 182 ~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~ 225 (267)
T 2zu0_C 182 EPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQR 225 (267)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGG
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHH
Confidence 5779999995 45667788889999887643 455777776544
No 473
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=93.27 E-value=0.038 Score=47.58 Aligned_cols=43 Identities=12% Similarity=0.268 Sum_probs=31.3
Q ss_pred ceEEEEEeCC-CCCCHHHHHHHHHHHHHhcc-CccEEEEeecccc
Q 017884 141 SVKLVLLDEA-DAMTKDAQFALRRVIEKYTK-NTRFALICNQVNK 183 (364)
Q Consensus 141 ~~~viiiDe~-~~l~~~~~~~L~~~le~~~~-~~~~Il~~~~~~~ 183 (364)
+++++++||. ..|.......+.+++.+... ...+|++++....
T Consensus 171 ~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~ 215 (257)
T 1g6h_A 171 NPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDI 215 (257)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCST
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHH
Confidence 6789999995 55667788888888877643 4557777766543
No 474
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=93.26 E-value=0.028 Score=50.79 Aligned_cols=23 Identities=26% Similarity=0.320 Sum_probs=20.2
Q ss_pred cEEEeCCCCccHHHHHHHHHHHH
Q 017884 76 HLLLYGPPGTGKTSTILAVARKL 98 (364)
Q Consensus 76 ~lll~G~~G~GKt~la~~l~~~l 98 (364)
.+.|.||+|+||||+++.++...
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCccHHHHHHHHhccc
Confidence 37999999999999999998654
No 475
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=93.26 E-value=0.038 Score=47.24 Aligned_cols=42 Identities=21% Similarity=0.439 Sum_probs=30.4
Q ss_pred ceEEEEEeCC-CCCCHHHHHHHHHHHHHhccCccEEEEeeccc
Q 017884 141 SVKLVLLDEA-DAMTKDAQFALRRVIEKYTKNTRFALICNQVN 182 (364)
Q Consensus 141 ~~~viiiDe~-~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~ 182 (364)
+++++++||. ..|.......+.+++.+......+|+++....
T Consensus 163 ~p~lllLDEPts~LD~~~~~~i~~~l~~~~~g~tviivtH~~~ 205 (247)
T 2ff7_A 163 NPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLS 205 (247)
T ss_dssp CCSEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGG
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHH
Confidence 5789999996 45566777888888877654556777776654
No 476
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=93.25 E-value=0.053 Score=49.00 Aligned_cols=24 Identities=29% Similarity=0.553 Sum_probs=21.9
Q ss_pred EEEeCCCCccHHHHHHHHHHHHcC
Q 017884 77 LLLYGPPGTGKTSTILAVARKLYG 100 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l~~ 100 (364)
+.|.||.|+||||+++.++..+..
T Consensus 160 i~lvG~nGsGKTTll~~Lag~l~~ 183 (359)
T 2og2_A 160 IMIVGVNGGGKTTSLGKLAHRLKN 183 (359)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHH
T ss_pred EEEEcCCCChHHHHHHHHHhhccc
Confidence 699999999999999999998753
No 477
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=93.25 E-value=0.046 Score=49.66 Aligned_cols=23 Identities=17% Similarity=0.306 Sum_probs=21.3
Q ss_pred EEEeCCCCccHHHHHHHHHHHHc
Q 017884 77 LLLYGPPGTGKTSTILAVARKLY 99 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l~ 99 (364)
+.|.||+|+||||+++.++..+.
T Consensus 173 ~~IvG~nGsGKSTLlk~L~gl~~ 195 (365)
T 1lw7_A 173 VAILGGESSGKSVLVNKLAAVFN 195 (365)
T ss_dssp EEEECCTTSHHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 79999999999999999999863
No 478
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=93.24 E-value=0.13 Score=45.35 Aligned_cols=22 Identities=18% Similarity=0.381 Sum_probs=19.8
Q ss_pred cEEEeCCCCccHHHHHHHHHHH
Q 017884 76 HLLLYGPPGTGKTSTILAVARK 97 (364)
Q Consensus 76 ~lll~G~~G~GKt~la~~l~~~ 97 (364)
.+.+.|.||+||||++.++...
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3799999999999999999865
No 479
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.23 E-value=0.039 Score=46.96 Aligned_cols=41 Identities=22% Similarity=0.259 Sum_probs=29.1
Q ss_pred ceEEEEEeCC-CCCCHHHHHHHHHHHHHhc-cCccEEEEeecc
Q 017884 141 SVKLVLLDEA-DAMTKDAQFALRRVIEKYT-KNTRFALICNQV 181 (364)
Q Consensus 141 ~~~viiiDe~-~~l~~~~~~~L~~~le~~~-~~~~~Il~~~~~ 181 (364)
+++++++||. ..|.......+.+++.+.. ....+|++|+..
T Consensus 157 ~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~ 199 (240)
T 1ji0_A 157 RPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNA 199 (240)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCH
Confidence 6789999995 4566777788888877654 345577777654
No 480
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=93.20 E-value=0.062 Score=41.96 Aligned_cols=24 Identities=38% Similarity=0.510 Sum_probs=21.5
Q ss_pred EEEeCCCCccHHHHHHHHHHHHcC
Q 017884 77 LLLYGPPGTGKTSTILAVARKLYG 100 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l~~ 100 (364)
.+|+||.|+|||+++.++.-.+..
T Consensus 26 ~~I~G~NGsGKStil~Ai~~~l~g 49 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLDAILVGLYW 49 (149)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHHcC
Confidence 599999999999999999887754
No 481
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=93.20 E-value=0.041 Score=46.47 Aligned_cols=42 Identities=17% Similarity=0.190 Sum_probs=27.9
Q ss_pred ceEEEEEeCC-CCCCHHHHHHHHHH-HHHhccCccEEEEeeccc
Q 017884 141 SVKLVLLDEA-DAMTKDAQFALRRV-IEKYTKNTRFALICNQVN 182 (364)
Q Consensus 141 ~~~viiiDe~-~~l~~~~~~~L~~~-le~~~~~~~~Il~~~~~~ 182 (364)
+++++++||. ..|.......+.+. +........+|++++...
T Consensus 148 ~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~ 191 (229)
T 2pze_A 148 DADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKME 191 (229)
T ss_dssp CCSEEEEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHH
T ss_pred CCCEEEEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChH
Confidence 5789999995 45566777777775 344333455777776543
No 482
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=93.20 E-value=0.31 Score=45.52 Aligned_cols=20 Identities=25% Similarity=0.433 Sum_probs=15.2
Q ss_pred cEEEeCCCCccHHHH-HHHHH
Q 017884 76 HLLLYGPPGTGKTST-ILAVA 95 (364)
Q Consensus 76 ~lll~G~~G~GKt~l-a~~l~ 95 (364)
.+++.||+|+|||.. +-.+.
T Consensus 21 ~~lv~a~TGsGKT~~~~~~~l 41 (451)
T 2jlq_A 21 LTIMDLHPGAGKTKRILPSIV 41 (451)
T ss_dssp EEEECCCTTSSCCTTHHHHHH
T ss_pred eEEEECCCCCCHhhHHHHHHH
Confidence 469999999999983 44443
No 483
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=93.18 E-value=0.061 Score=44.53 Aligned_cols=23 Identities=39% Similarity=0.650 Sum_probs=21.3
Q ss_pred EEEeCCCCccHHHHHHHHHHHHc
Q 017884 77 LLLYGPPGTGKTSTILAVARKLY 99 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l~ 99 (364)
+.|.|+.|+||||.++.+++.+.
T Consensus 5 I~~EG~dGsGKsTq~~~L~~~L~ 27 (205)
T 4hlc_A 5 ITFEGPEGSGKTTVINEVYHRLV 27 (205)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEECCCCCcHHHHHHHHHHHHH
Confidence 68899999999999999999984
No 484
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=93.17 E-value=0.041 Score=47.54 Aligned_cols=41 Identities=15% Similarity=0.331 Sum_probs=27.5
Q ss_pred ceEEEEEeCC-CCCCHHHHHHHHHHHHHhcc-CccEEEEeecc
Q 017884 141 SVKLVLLDEA-DAMTKDAQFALRRVIEKYTK-NTRFALICNQV 181 (364)
Q Consensus 141 ~~~viiiDe~-~~l~~~~~~~L~~~le~~~~-~~~~Il~~~~~ 181 (364)
+++++++||. ..|....+..+.+++.+... ...+|++|...
T Consensus 177 ~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~ 219 (263)
T 2olj_A 177 EPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEM 219 (263)
T ss_dssp CCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCH
Confidence 5779999985 45566777777777776533 34566666543
No 485
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=93.17 E-value=0.056 Score=42.56 Aligned_cols=22 Identities=32% Similarity=0.430 Sum_probs=19.9
Q ss_pred EEEeCCCCccHHHHHHHHHHHH
Q 017884 77 LLLYGPPGTGKTSTILAVARKL 98 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l 98 (364)
+++.|++|+|||+++..+...-
T Consensus 9 i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1z08_A 9 VVLLGEGCVGKTSLVLRYCENK 30 (170)
T ss_dssp EEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEECcCCCCHHHHHHHHHcCC
Confidence 8999999999999999998653
No 486
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=93.17 E-value=0.061 Score=47.86 Aligned_cols=26 Identities=31% Similarity=0.439 Sum_probs=22.8
Q ss_pred EEEeCCCCccHHHHHHHHHHHHcCCC
Q 017884 77 LLLYGPPGTGKTSTILAVARKLYGAQ 102 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l~~~~ 102 (364)
+.+.|++|+||||++..++..+...+
T Consensus 108 I~ivG~~G~GKTT~~~~LA~~l~~~g 133 (320)
T 1zu4_A 108 FMLVGVNGTGKTTSLAKMANYYAELG 133 (320)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCC
Confidence 68999999999999999999876443
No 487
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=93.14 E-value=0.058 Score=50.75 Aligned_cols=24 Identities=42% Similarity=0.600 Sum_probs=21.7
Q ss_pred EEEeCCCCccHHHHHHHHHHHHcC
Q 017884 77 LLLYGPPGTGKTSTILAVARKLYG 100 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l~~ 100 (364)
+.|.|++|+||||+++.|+..+..
T Consensus 296 I~LVGpNGSGKTTLl~~LAgll~~ 319 (503)
T 2yhs_A 296 ILMVGVNGVGKTTTIGKLARQFEQ 319 (503)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEECCCcccHHHHHHHHHHHhhh
Confidence 699999999999999999988753
No 488
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=93.12 E-value=0.042 Score=47.57 Aligned_cols=42 Identities=19% Similarity=0.286 Sum_probs=29.6
Q ss_pred ceEEEEEeCC-CCCCHHHHHHHHHHHHHhcc--CccEEEEeeccc
Q 017884 141 SVKLVLLDEA-DAMTKDAQFALRRVIEKYTK--NTRFALICNQVN 182 (364)
Q Consensus 141 ~~~viiiDe~-~~l~~~~~~~L~~~le~~~~--~~~~Il~~~~~~ 182 (364)
+++++++||. ..|....+..+.+++.+... ...+|++|....
T Consensus 165 ~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~ 209 (266)
T 4g1u_C 165 TPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLN 209 (266)
T ss_dssp CCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHH
T ss_pred CCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHH
Confidence 6889999995 45667778888888877643 345777776543
No 489
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=93.10 E-value=0.048 Score=49.20 Aligned_cols=42 Identities=14% Similarity=0.296 Sum_probs=29.9
Q ss_pred ceEEEEEeCC-CCCCHHHHHHHHHHHHHhcc--CccEEEEeeccc
Q 017884 141 SVKLVLLDEA-DAMTKDAQFALRRVIEKYTK--NTRFALICNQVN 182 (364)
Q Consensus 141 ~~~viiiDe~-~~l~~~~~~~L~~~le~~~~--~~~~Il~~~~~~ 182 (364)
+++++++||- ..|.......++..+.+... ...+|++|....
T Consensus 163 ~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~ 207 (355)
T 1z47_A 163 RPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQE 207 (355)
T ss_dssp CCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHH
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHH
Confidence 6889999995 56667777777777776532 456777876543
No 490
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=93.07 E-value=0.088 Score=42.37 Aligned_cols=24 Identities=17% Similarity=0.331 Sum_probs=20.5
Q ss_pred CCcEEEeCCCCccHHHHHHHHHHH
Q 017884 74 LPHLLLYGPPGTGKTSTILAVARK 97 (364)
Q Consensus 74 ~~~lll~G~~G~GKt~la~~l~~~ 97 (364)
...+++.|++|+|||+++..+...
T Consensus 16 ~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 16 EHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTT
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 344899999999999999999853
No 491
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=93.07 E-value=0.019 Score=49.58 Aligned_cols=23 Identities=13% Similarity=0.216 Sum_probs=21.2
Q ss_pred cEEEeCCCCccHHHHHHHHHHHH
Q 017884 76 HLLLYGPPGTGKTSTILAVARKL 98 (364)
Q Consensus 76 ~lll~G~~G~GKt~la~~l~~~l 98 (364)
.++|.|++|+||||+++.+++.+
T Consensus 26 ~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 26 KISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp EEEEECSTTSSHHHHHTTTGGGC
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 37999999999999999999886
No 492
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=93.06 E-value=0.4 Score=46.01 Aligned_cols=38 Identities=24% Similarity=0.347 Sum_probs=23.7
Q ss_pred ceEEEEEeCCCCCC----HHHHHHHHHHHHHhcc----CccEEEEe
Q 017884 141 SVKLVLLDEADAMT----KDAQFALRRVIEKYTK----NTRFALIC 178 (364)
Q Consensus 141 ~~~viiiDe~~~l~----~~~~~~L~~~le~~~~----~~~~Il~~ 178 (364)
..++|||||+|.+. ......+...+..... .+.+++.|
T Consensus 226 ~~~~lViDEah~l~~~~f~~~~~~i~~~l~~~~~~~~~~~~~l~~S 271 (563)
T 3i5x_A 226 FVDYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFS 271 (563)
T ss_dssp TCCEEEEETHHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEE
T ss_pred cceEEEEeCHHHHhccchHHHHHHHHHhhhhccccCccCceEEEEE
Confidence 36799999999885 3445555555554332 44555555
No 493
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.05 E-value=0.044 Score=47.14 Aligned_cols=42 Identities=12% Similarity=0.268 Sum_probs=29.6
Q ss_pred ceEEEEEeCC-CCCCHHHHHHHHHHHHHhcc-CccEEEEeeccc
Q 017884 141 SVKLVLLDEA-DAMTKDAQFALRRVIEKYTK-NTRFALICNQVN 182 (364)
Q Consensus 141 ~~~viiiDe~-~~l~~~~~~~L~~~le~~~~-~~~~Il~~~~~~ 182 (364)
+++++++||. ..|.......+.+++.+... ...+|++|....
T Consensus 164 ~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~ 207 (256)
T 1vpl_A 164 NPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNML 207 (256)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHH
T ss_pred CCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH
Confidence 6789999995 45667778888888877642 455677776543
No 494
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=93.04 E-value=0.044 Score=46.91 Aligned_cols=39 Identities=23% Similarity=0.446 Sum_probs=26.8
Q ss_pred EEEEeCC-CCCCHHHHHHHHHHHHHhcc-CccEEEEeeccc
Q 017884 144 LVLLDEA-DAMTKDAQFALRRVIEKYTK-NTRFALICNQVN 182 (364)
Q Consensus 144 viiiDe~-~~l~~~~~~~L~~~le~~~~-~~~~Il~~~~~~ 182 (364)
++++||. ..|....+..+.+++.+... ...+|++++...
T Consensus 154 lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~ 194 (249)
T 2qi9_C 154 LLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLN 194 (249)
T ss_dssp EEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 9999995 45667778888888877642 445667775543
No 495
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=93.02 E-value=0.13 Score=54.61 Aligned_cols=43 Identities=16% Similarity=0.390 Sum_probs=32.1
Q ss_pred ceEEEEEeCCCC-CCHHHHHHHHHHHHHhccCccEEEEeecccc
Q 017884 141 SVKLVLLDEADA-MTKDAQFALRRVIEKYTKNTRFALICNQVNK 183 (364)
Q Consensus 141 ~~~viiiDe~~~-l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~ 183 (364)
+++++++||.-. +.......+.+.+++......+|++++..+.
T Consensus 1189 ~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~~~~tvi~isH~l~~ 1232 (1284)
T 3g5u_A 1189 QPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLST 1232 (1284)
T ss_dssp CCSSEEEESCSSSCCHHHHHHHHHHHHHHSSSSCEEEECSCTTG
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHhCCCCEEEEEecCHHH
Confidence 578999999754 4566677788888776666678888876654
No 496
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=93.02 E-value=0.051 Score=49.19 Aligned_cols=42 Identities=14% Similarity=0.279 Sum_probs=30.0
Q ss_pred ceEEEEEeCC-CCCCHHHHHHHHHHHHHhcc--CccEEEEeeccc
Q 017884 141 SVKLVLLDEA-DAMTKDAQFALRRVIEKYTK--NTRFALICNQVN 182 (364)
Q Consensus 141 ~~~viiiDe~-~~l~~~~~~~L~~~le~~~~--~~~~Il~~~~~~ 182 (364)
+++++++||- ..|.......++..+.+... ...+|++|+...
T Consensus 151 ~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~ 195 (362)
T 2it1_A 151 EPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQA 195 (362)
T ss_dssp CCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH
T ss_pred CCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHH
Confidence 6789999994 55667777777777776532 456778886544
No 497
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=93.02 E-value=0.043 Score=47.30 Aligned_cols=43 Identities=21% Similarity=0.533 Sum_probs=31.7
Q ss_pred ceEEEEEeCC-CCCCHHHHHHHHHHHHHhccCccEEEEeecccc
Q 017884 141 SVKLVLLDEA-DAMTKDAQFALRRVIEKYTKNTRFALICNQVNK 183 (364)
Q Consensus 141 ~~~viiiDe~-~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~ 183 (364)
+++++++||. ..|.......+.+++.+......+|++++....
T Consensus 173 ~p~lllLDEPts~LD~~~~~~i~~~l~~l~~~~tviivtH~~~~ 216 (260)
T 2ghi_A 173 DPKIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLST 216 (260)
T ss_dssp CCSEEEEECCCCTTCHHHHHHHHHHHHHHTTTSEEEEECSSGGG
T ss_pred CCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHH
Confidence 5779999995 455677788888888877555567777776543
No 498
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=93.02 E-value=0.075 Score=47.69 Aligned_cols=25 Identities=36% Similarity=0.510 Sum_probs=22.0
Q ss_pred cEEEeCCCCccHHHHHHHHHHHHcC
Q 017884 76 HLLLYGPPGTGKTSTILAVARKLYG 100 (364)
Q Consensus 76 ~lll~G~~G~GKt~la~~l~~~l~~ 100 (364)
.+.|.|++|+||||+++.++..+..
T Consensus 57 ~v~i~G~~GaGKSTLl~~l~g~~~~ 81 (337)
T 2qm8_A 57 RVGITGVPGVGKSTTIDALGSLLTA 81 (337)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhhhh
Confidence 3799999999999999999987643
No 499
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=93.01 E-value=0.043 Score=47.62 Aligned_cols=42 Identities=24% Similarity=0.432 Sum_probs=31.0
Q ss_pred ceEEEEEeCC-CCCCHHHHHHHHHHHHHhcc--CccEEEEeeccc
Q 017884 141 SVKLVLLDEA-DAMTKDAQFALRRVIEKYTK--NTRFALICNQVN 182 (364)
Q Consensus 141 ~~~viiiDe~-~~l~~~~~~~L~~~le~~~~--~~~~Il~~~~~~ 182 (364)
+++++++||. ..|.......+.+++.+... ...+|++|....
T Consensus 174 ~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~ 218 (271)
T 2ixe_A 174 KPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLS 218 (271)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHH
T ss_pred CCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHH
Confidence 6789999995 45567788888998887643 455777776544
No 500
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=93.01 E-value=0.058 Score=52.39 Aligned_cols=24 Identities=33% Similarity=0.464 Sum_probs=22.1
Q ss_pred EEEeCCCCccHHHHHHHHHHHHcC
Q 017884 77 LLLYGPPGTGKTSTILAVARKLYG 100 (364)
Q Consensus 77 lll~G~~G~GKt~la~~l~~~l~~ 100 (364)
++|.|.+|+||||+++.+++.+..
T Consensus 55 IvLtGlsGSGKSTlAr~La~~L~~ 78 (630)
T 1x6v_B 55 VWLTGLSGAGKTTVSMALEEYLVC 78 (630)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHh
Confidence 799999999999999999999843
Done!