BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017885
(364 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9GSB0|CRTP1_DICDI Crt homolog 1 OS=Dictyostelium discoideum GN=crtp1 PE=2 SV=1
Length = 473
Score = 87.8 bits (216), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 69/248 (27%), Positives = 118/248 (47%), Gaps = 10/248 (4%)
Query: 113 RRVEIVIAAAVTVLLGVGNRVLYKLALVPLKHYPFFLAQLATFGYVAVYFSIL-YLRYHA 171
+ I+I + V GV N VL K + +Y FFL+QL FGYV ++ ++ Y +
Sbjct: 48 ETITILIYVVLYVTSGVINSVLLKKVMNKFTNYAFFLSQLTNFGYVPIFGAVTAYKIFFT 107
Query: 172 GIVTDEMLSMPKAPFVAVGLLEALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFL 231
+ E P F +G L+A+ + G SG +L+Q + + ++ S IFL
Sbjct: 108 KDIPQETRDFPTRKFAIMGALDAITGFFVVIGGVSTSGPLQQLLNQAIIPFTMIASFIFL 167
Query: 232 GRRYRVNQLFGCFLVGIGVIITVASGSNPGHSLKGAGIFWSLLMIVSFLLQAADTVLKEV 291
RY + QL G LV IG ++T S G S G FW+ ++S + A V K++
Sbjct: 168 KERYSLIQLGGA-LVIIGGVVTSLIPSLLGGSSGGNKPFWNFFYLLSVIPGALSNVYKDI 226
Query: 292 IFLDAAQRLKGGVDLFVVNSYGSAFQALFICLLLP---FLSKLWGIPFSQLPIYLRDGAA 348
F A +D++ + + S +Q++F L P +L + F Q+ ++++GA
Sbjct: 227 GFQAVAD-----MDVWYLQYWDSLYQSIFGLFLFPVNNWLPPPATVKFEQILPFMKEGAE 281
Query: 349 CFLNLGTL 356
C + ++
Sbjct: 282 CLAGINSI 289
>sp|Q55C66|CRTP3_DICDI Crt homolog 3 OS=Dictyostelium discoideum GN=crtp3 PE=3 SV=1
Length = 478
Score = 86.3 bits (212), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 68/241 (28%), Positives = 124/241 (51%), Gaps = 11/241 (4%)
Query: 113 RRVEIVIAAAVTVLLGVGNRVLYKLALVPLKHYPFFLAQLATFGYVAVYF-SILYLRYHA 171
+ I+I + ++ GV N VL K ++ +Y FFL+Q+ +GY+ ++ ++ Y Y
Sbjct: 51 ETLPILIYVLLYIISGVINVVLLKKLMIKFVNYGFFLSQITNYGYLPIFLVAMWYKMYCT 110
Query: 172 GIVTDEMLSMPKAPFVAVGLLEALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFL 231
V E + P+ FV +GLL+A+ + G SG +L+Q + + ++ S IFL
Sbjct: 111 SDVPKETRNFPQYKFVIMGLLDAINGFFVVIGGVSTSGPLQQLLNQAIIPFTMIASFIFL 170
Query: 232 GRRYRVNQLFGCFLVGIGVIITVASGSNPGHSLKGAGIFWSLLMIVSFLLQAADTVLKEV 291
RY + QL G ++ GVI+++ S G S G +F++ ++S + A V K++
Sbjct: 171 RERYSLFQLGGAAVILGGVIVSLIP-SLVGGSSGGNILFYNFFYLISVIPGALSNVYKDI 229
Query: 292 IFLDAAQRLKGGVDLFVVNSYGSAFQALFICLLLP---FLSKLWGIPFSQLPIYLRDGAA 348
F Q + +D++ + + +Q+LF +L P +L I F+++ +RDGA
Sbjct: 230 AF----QSID--MDVWYLQFWDCLYQSLFGSILFPVNNWLPPPATIKFTEIIPSMRDGAL 283
Query: 349 C 349
C
Sbjct: 284 C 284
>sp|Q550A6|CRTP2_DICDI Crt homolog 2 OS=Dictyostelium discoideum GN=crtp2 PE=3 SV=1
Length = 484
Score = 80.5 bits (197), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 67/256 (26%), Positives = 125/256 (48%), Gaps = 13/256 (5%)
Query: 105 NVISKSNDRRVEIVIAAAVTVLLGVGNRVLYKLALVPLKHYPFFLAQLATFGYVAVYFSI 164
N ISK + +++ + +L GV N +L K + +Y FFL QL +GYV ++ +I
Sbjct: 51 NSISK---QTATVLVYVVLYILSGVINSLLLKKVMNVFTNYGFFLNQLTNYGYVPIFGAI 107
Query: 165 -LYLRYHAGIVTDEMLSMPKAPFVAVGLLEALAAATGMAAGAILSGASIPILSQTFLVWQ 223
LY + + S P+ FV +G L+A+ + G +G +L+Q+ + +
Sbjct: 108 VLYKILFTNDIPKDTRSFPQWKFVIMGALDAVTGYFVVIGGIKTTGPLQQLLNQSVIPFT 167
Query: 224 ILLSIIFLGRRYRVNQLFGCFLVGIGVIITVASGSNPGHSLKGAGIFWSLLMIVSFLLQA 283
+LLS IFL RY + QL G ++ GV++++ G++ G +F++ ++S + A
Sbjct: 168 MLLSFIFLKERYSLIQLGGALIIIGGVVVSLIPSLTGGNT-SGNMLFYNFFYLISMIPYA 226
Query: 284 ADTVLKEVIFLDAAQRLKGGVDLFVVNSYGSAFQALFICLLLP---FLSKLWGIPFSQLP 340
V K + F +D++ + + + +Q+L +L P +L + F+Q+
Sbjct: 227 FSNVYKAIGFSTVED-----MDVWYLQYFDALYQSLVGTVLFPINNWLPPPSDMKFNQVI 281
Query: 341 IYLRDGAACFLNLGTL 356
L+ G C + TL
Sbjct: 282 PQLKAGGKCLGGINTL 297
>sp|Q9GSD8|CRT_PLABE Putative chloroquine resistance transporter OS=Plasmodium berghei
GN=CG10 PE=2 SV=1
Length = 425
Score = 52.0 bits (123), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 62/269 (23%), Positives = 113/269 (42%), Gaps = 27/269 (10%)
Query: 95 RKSGERTVE--FNVISKSNDRRVEIVIAAAVTVLLGVGNRVLYKLALVPLKHYPFFLAQL 152
SG V+ F +I V + + + + + + V N+V K L + +Y F ++
Sbjct: 35 NNSGRSCVKRFFKIIGNEMKNNVYVYLLSILYLCVCVMNKVFAKRTLNKMGNYSFVTSET 94
Query: 153 ATFGYVAVYFSILYLRYH----AGIVTDEMLSMPKAPFVAVGLLEALAAATGMAAGAILS 208
+ V F +LY Y + + +E F + LL+A M +
Sbjct: 95 HNIICIIV-FQLLYFIYRKTSSSSVYKNESQKNFGWQFFLISLLDASTVIISMIGLTRTT 153
Query: 209 GASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCF--LVGIGVIITVASGSNPGHSLKG 266
G + Q + + +FLG RY + G F L+ I V+ T S G +
Sbjct: 154 GNIQSFIMQLIIPVNMYFWFMFLGYRYHLFNYLGAFIILITIAVVETFLSFETQGEN--- 210
Query: 267 AGIFWSLLMIVSFLLQAADTVLKEVIFLDAAQRLKGGVDLFVVNSYGSAFQALFICLL-- 324
I ++L+MI +F + + +EV+F K +++ +N+ FQ F LL
Sbjct: 211 -SIIFNLIMISAFNTLSFSNMTREVVF------KKHKINILRLNAMVVLFQ-FFTSLLVL 262
Query: 325 ----LPFLSKLWGIPFSQLPIYLRDGAAC 349
+PFL +++ +PFS++ + +G C
Sbjct: 263 PVYNIPFLKEIY-MPFSEMSTNINNGLRC 290
>sp|Q7REK3|CRT_PLAYO Putative chloroquine resistance transporter OS=Plasmodium yoelii
yoelii GN=PY05061 PE=3 SV=1
Length = 424
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 63/282 (22%), Positives = 117/282 (41%), Gaps = 33/282 (11%)
Query: 81 SDGHEAAVGDLVDKRKSGERTVE--FNVISKSNDRRVEIVIAAAVTVLLGVGNRVLYKLA 138
++G E +GD SG ++ F +I V + + + + + V N+V K
Sbjct: 28 TNGSE--IGD-----NSGRSCIKRFFKIIGNEMKNNVYVYFLSILYLCVCVMNKVFAKRT 80
Query: 139 LVPLKHYPFFLAQLATFGYVAVYFSILYLRYHAGIVT---DEMLSMPKAPFVAVGLLEAL 195
L + +Y F ++ + V F +LY Y + +E F + LL+A
Sbjct: 81 LNKMGNYSFVTSETHNIICIVV-FQLLYFIYRKTSTSGYKNESQKNFGWQFFLISLLDAS 139
Query: 196 AAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCF--LVGIGVIIT 253
M +G + Q + + +FLG RY + G F L+ I V+ T
Sbjct: 140 TVIISMIGLTRTTGNIQSFIMQLIIPVNMYFCFMFLGYRYHLFNYLGAFIILITIAVVET 199
Query: 254 VASGSNPGHSLKGAGIFWSLLMIVSFLLQAADTVLKEVIFLDAAQRLKGGVDLFVVNSYG 313
S + I ++L+MI + + + + +EV+F K +++ +N+
Sbjct: 200 FLSFETQSEN----SIIFNLIMISALIPLSFSNMTREVVF------KKHKINILRLNAMV 249
Query: 314 SAFQALFICLL------LPFLSKLWGIPFSQLPIYLRDGAAC 349
FQ F LL +PFL +++ +PFS++ + +G C
Sbjct: 250 VLFQ-FFTSLLVLPVYNIPFLKEIY-MPFSEMSTNINNGLRC 289
>sp|Q7Z0V9|CRT_PLACH Putative chloroquine resistance transporter OS=Plasmodium chabaudi
GN=CG10 PE=3 SV=1
Length = 424
Score = 46.2 bits (108), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 58/276 (21%), Positives = 116/276 (42%), Gaps = 25/276 (9%)
Query: 84 HEAAVGDLVDKRKSGERTVEFNVISKSNDRRVEIVIAAAVTVLLGVGNRVLYKLALVPLK 143
+++ +G+ + R G + + +I + + + + + + + V N+V K L +
Sbjct: 29 NDSEIGN--NSRWGGAKRI-CKLIGNEMRNNIYVYLLSILYLCVSVMNKVFSKRTLNKIG 85
Query: 144 HYPFFLAQLATFGYVAVYFSILYLRYHAG---IVTDEMLSMPKAPFVAVGLLEALAAATG 200
+Y F +++ + F +LY Y +E F + LL+A
Sbjct: 86 NYSFVTSEVHNM-ICTIVFQLLYFIYRKTSNPASRNESQKNFGWQFFLISLLDASTVIIT 144
Query: 201 MAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCF--LVGIGVIITVASGS 258
M +G + Q + + IFLG RY + G F L+ I + TV S
Sbjct: 145 MIGLTRTTGNIQSFIMQLIIPVNMYFCFIFLGYRYHLFNYLGAFIILITIAAVETVLSYE 204
Query: 259 NPGHSLKGAGIFWSLLMIVSFLLQAADTVLKEVIFLDAAQRLKGGVDLFVVNSYGSAFQA 318
+ I ++L+MI + + + + +EV+F K +++ +N+ + FQ
Sbjct: 205 TQSDN----SIIFNLIMIFALIPLSFSNMTREVVF------KKHKINIIRLNAMVALFQF 254
Query: 319 LFICLLLP-----FLSKLWGIPFSQLPIYLRDGAAC 349
L+LP FL +++ +PFS++ + DG C
Sbjct: 255 FTSLLVLPVYNISFLKEIY-MPFSEMGTNINDGLRC 289
>sp|Q9GSD3|CRT_PLAVS Putative chloroquine resistance transporter OS=Plasmodium vivax
(strain Salvador I) GN=CG10 PE=3 SV=1
Length = 424
Score = 45.8 bits (107), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 55/253 (21%), Positives = 107/253 (42%), Gaps = 15/253 (5%)
Query: 111 NDRRVEIVIAAAVTVLLGVG--NRVLYKLALVPLKHYPFFLAQLATFGYVAVYFSILYLR 168
N+ R I I + V L V N++L K L + +Y F ++ + V+F++ ++
Sbjct: 52 NEIRENISIYLLIIVYLCVCVMNKLLAKRTLKKIGNYSFVTSETHNCICMVVFFALYFMF 111
Query: 169 YHAGIVTDEMLSMPKAPFVAVGLLEALAAATGMAAGAILSGASIPILSQTFLVWQILLSI 228
+ E F+ + LL+A + +G + Q + +
Sbjct: 112 GRRVMSAKERHRNFGVQFLLISLLDACSVIIAFIGLTRTTGNIQSFVMQLSIPINMFFCF 171
Query: 229 IFLGRRYRVNQLFGCFLVGIGVIITVASGSNPGHSLKGAGIFWSLLMIVSFLLQAADTVL 288
+ L RY + G F+ I V I V + + I ++L++I S + + +
Sbjct: 172 LILRYRYHLFNYVGAFI--IVVTIAVVEFMLSFETQEENSIVFNLVLIASLIPLSFSNMT 229
Query: 289 KEVIFLDAAQRLKGGVDLFVVNSYGSAFQALFICLLLPFLS----KLWGIPFSQLPIYLR 344
+E++F K +++ +N+ S FQ CL+LP + K +PFS++ ++
Sbjct: 230 REIVF------KKYKINILRLNAVVSFFQIFTSCLMLPMYTLPFLKQINLPFSEIGTNIK 283
Query: 345 DGAAC-FLNLGTL 356
+G C FL T+
Sbjct: 284 NGFRCLFLGQNTI 296
>sp|Q9N623|CRT_PLAFA Chloroquine resistance transporter OS=Plasmodium falciparum GN=CRT
PE=1 SV=1
Length = 424
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 57/260 (21%), Positives = 109/260 (41%), Gaps = 32/260 (12%)
Query: 104 FNVISKSNDRRVEIVIAAAVTVLLGVGNRVLYKLALVPLKHYPFFLAQLATFGYVAVYFS 163
F +I K + I I + + + + V N++ K L + +Y F ++ F + ++F
Sbjct: 48 FKLIFKEIKDNIFIYILSIIYLSVCVMNKIFAKRTLNKIGNYSFVTSETHNFICMIMFFI 107
Query: 164 ILYLRYHAGIVTDEMLSMPKAPFVAVGLLEA---------LAAATGMAAGAILSGASIPI 214
+ L + + E F A+ +L+A L TG +L SIPI
Sbjct: 108 VYSLFGNKKGNSKERHRSFNLQFFAISMLDACSVILAFIGLTRTTGNIQSFVLQ-LSIPI 166
Query: 215 LSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVASGSNPGHSLKGAGIFWSLL 274
+ + L RY + G V I V I + + + I ++L+
Sbjct: 167 --------NMFFCFLILRYRYHLYNYLGA--VIIVVTIALVEMKLSFETQEENSIIFNLV 216
Query: 275 MIVSFLLQAADTVLKEVIFLDAAQRLKGGVDLFVVNSYGSAFQALFICLL-----LPFLS 329
+I + + + +E++F K +D+ +N+ S FQ CL+ LPFL
Sbjct: 217 LISALIPVCFSNMTREIVF------KKYKIDILRLNAMVSFFQLFTSCLILPVYTLPFLK 270
Query: 330 KLWGIPFSQLPIYLRDGAAC 349
+L +P++++ +++G AC
Sbjct: 271 QL-HLPYNEIWTNIKNGFAC 289
>sp|Q8IBZ9|CRT_PLAF7 Putative chloroquine resistance transporter OS=Plasmodium
falciparum (isolate 3D7) GN=CG10 PE=3 SV=1
Length = 424
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 57/260 (21%), Positives = 109/260 (41%), Gaps = 32/260 (12%)
Query: 104 FNVISKSNDRRVEIVIAAAVTVLLGVGNRVLYKLALVPLKHYPFFLAQLATFGYVAVYFS 163
F +I K + I I + + + + V N++ K L + +Y F ++ F + ++F
Sbjct: 48 FKLIFKEIKDNIFIYILSIIYLSVCVMNKIFAKRTLNKIGNYSFVTSETHNFICMIMFFI 107
Query: 164 ILYLRYHAGIVTDEMLSMPKAPFVAVGLLEA---------LAAATGMAAGAILSGASIPI 214
+ L + + E F A+ +L+A L TG +L SIPI
Sbjct: 108 VYSLFGNKKGNSKERHRSFNLQFFAISMLDACSVILAFIGLTRTTGNIQSFVLQ-LSIPI 166
Query: 215 LSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVASGSNPGHSLKGAGIFWSLL 274
+ + L RY + G V I V I + + + I ++L+
Sbjct: 167 --------NMFFCFLILRYRYHLYNYLGA--VIIVVTIALVEMKLSFETQEENSIIFNLV 216
Query: 275 MIVSFLLQAADTVLKEVIFLDAAQRLKGGVDLFVVNSYGSAFQALFICLL-----LPFLS 329
+I + + + +E++F K +D+ +N+ S FQ CL+ LPFL
Sbjct: 217 LISALIPVCFSNMTREIVF------KKYKIDILRLNAMVSFFQLFTSCLILPVYTLPFLK 270
Query: 330 KLWGIPFSQLPIYLRDGAAC 349
+L +P++++ +++G AC
Sbjct: 271 QL-HLPYNEIWTNIKNGFAC 289
>sp|Q9GSD7|CRT_PLAKN Putative chloroquine resistance transporter OS=Plasmodium knowlesi
GN=CG10 PE=2 SV=1
Length = 424
Score = 39.7 bits (91), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 58/287 (20%), Positives = 117/287 (40%), Gaps = 37/287 (12%)
Query: 82 DGHEAAVGDLVDKRKSGERTVEF-NVISKSNDRRVEIVIAAAVTVLLGVGNRVLYKLALV 140
D H ++ D+ + + + ++ + I + + + + V N+++ K L
Sbjct: 24 DSHAPNENEIADEAPMSRKILYYLKLVYHEIRENITIYLLIILYLCVCVMNKIMAKRTLK 83
Query: 141 PLKHYPFFLAQLATFGYVAVYFSILYLRYHAGIVTDEMLSMPKAPFVAVGLLEA------ 194
+ +Y F ++ + V+FS+ ++ E F+ + LL+A
Sbjct: 84 KIGNYSFVTSETHNTICMVVFFSLYFIFGRRVTSAKERHQNFGLQFLLISLLDACSVIIA 143
Query: 195 ---LAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVI 251
L TG ++ SIPI F + IL RYR LF VG +I
Sbjct: 144 FIGLTRTTGNIQSFVMQ-LSIPI--NMFFCFLIL--------RYRY-HLFN--YVGASII 189
Query: 252 ---ITVASGSNPGHSLKGAGIFWSLLMIVSFLLQAADTVLKEVIFLDAAQRLKGGVDLFV 308
I + + + I ++L++I S + + + +E++F K +++
Sbjct: 190 VLTIAIVEFILSFETQEENSIVFNLVLIASLIPMSFSNMTREIVF------KKYKINILR 243
Query: 309 VNSYGSAFQALFICLLLPFLS----KLWGIPFSQLPIYLRDGAACFL 351
+N+ S FQ CL+LP + K +PFS++ +++G C +
Sbjct: 244 LNAVVSFFQIFTSCLMLPMYTLPFLKQINLPFSEIGTNIKNGFRCLI 290
>sp|P0ABT8|YIJE_ECOLI Uncharacterized inner membrane transporter yiJE OS=Escherichia coli
(strain K12) GN=yijE PE=1 SV=1
Length = 301
Score = 37.4 bits (85), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 71/154 (46%), Gaps = 19/154 (12%)
Query: 181 MPKAPF---VAVGLLEALAAATGMAAGAILSGAS--IPILSQTFLVWQILLSIIFLGRRY 235
M PF +A+ LL+ G+A A++SG + + ILS T W ++ + +FLG R
Sbjct: 64 MRPTPFKYTLAIALLQT-CGMVGLAQWALVSGGAGKVAILSYTMPFWVVIFAALFLGERL 122
Query: 236 RVNQLFGCFLVGIGVIITVASGSNPGHSLKGAGIFWSLLMIVSFLLQAADTVLKEVIFLD 295
R Q F + G+ + + S+K A +L I+S + A ++ + ++
Sbjct: 123 RRGQYFAILIAAFGLFLVLQPWQLDFSSMKSA-----MLAILSGVSWGASAIVAKRLYAR 177
Query: 296 AAQRLKGGVDLFVVNSYGSAFQAL---FICLLLP 326
+ VDL + S+ + AL + LL+P
Sbjct: 178 HPR-----VDLLSLTSWQMLYAALVMSVVALLVP 206
>sp|P0ABT9|YIJE_ECOL6 Uncharacterized inner membrane transporter yiJE OS=Escherichia coli
O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=yijE PE=3
SV=1
Length = 301
Score = 37.4 bits (85), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 71/154 (46%), Gaps = 19/154 (12%)
Query: 181 MPKAPF---VAVGLLEALAAATGMAAGAILSGAS--IPILSQTFLVWQILLSIIFLGRRY 235
M PF +A+ LL+ G+A A++SG + + ILS T W ++ + +FLG R
Sbjct: 64 MRPTPFKYTLAIALLQT-CGMVGLAQWALVSGGAGKVAILSYTMPFWVVIFAALFLGERL 122
Query: 236 RVNQLFGCFLVGIGVIITVASGSNPGHSLKGAGIFWSLLMIVSFLLQAADTVLKEVIFLD 295
R Q F + G+ + + S+K A +L I+S + A ++ + ++
Sbjct: 123 RRGQYFAILIAAFGLFLVLQPWQLDFSSMKSA-----MLAILSGVSWGASAIVAKRLYAR 177
Query: 296 AAQRLKGGVDLFVVNSYGSAFQAL---FICLLLP 326
+ VDL + S+ + AL + LL+P
Sbjct: 178 HPR-----VDLLSLTSWQMLYAALVMSVVALLVP 206
>sp|Q8C261|NCKX5_MOUSE Sodium/potassium/calcium exchanger 5 OS=Mus musculus GN=Slc24a5
PE=2 SV=1
Length = 501
Score = 35.4 bits (80), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 46/90 (51%), Gaps = 11/90 (12%)
Query: 136 KLALVPLKHYP--FFLAQLATFGYVAVYF-SILYLRYHAGIVTDEMLSMPKAPFV--AVG 190
+ A+ P +P FF Q +T G + +YF ILY+ IV D+ +P + ++G
Sbjct: 45 QCAVSPASEFPEGFFTKQESTDGGIVIYFLIILYMCMAISIVCDKYF-LPSLEIISDSLG 103
Query: 191 LLEALAAATGMAAGAILSGASIPILSQTFL 220
L + +A AT MAA G+S P L FL
Sbjct: 104 LSQDVAGATFMAA-----GSSAPELVTAFL 128
>sp|P52893|ALAM_YEAST Probable alanine aminotransferase, mitochondrial OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=ALT1 PE=1
SV=1
Length = 592
Score = 35.4 bits (80), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 78/199 (39%), Gaps = 28/199 (14%)
Query: 72 VASAAAAERSDGHEAAVGDLVDKRKSGERTVEFNVISKSNDRRVEIVIAAAVTVLLGVGN 131
V + ++++ +G +V + + KR GE IS D + +AAV LL +
Sbjct: 218 VGAYSSSQGVEGIRKSVAEFITKRDEGE-------ISYPEDIFLTAGASAAVNYLLSIFC 270
Query: 132 RVLYKLALVPLKHYPFFLAQLATFGYVAVYFSILYLRYHAG---------IVTDEMLSMP 182
R L+P+ YP + A LA A+ + YL ++G V E +
Sbjct: 271 RGPETGVLIPIPQYPLYTATLALNNSQALPY---YLDENSGWSTNPEEIETVVKEAIQNE 327
Query: 183 KAPFVAVGLLEALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFG 242
P V V + G GA+LS SI +Q F V +++ Y+ N G
Sbjct: 328 IKPTVLVVI------NPGNPTGAVLSPESI---AQIFEVAAKYGTVVIADEVYQENIFPG 378
Query: 243 CFLVGIGVIITVASGSNPG 261
+ I+ +PG
Sbjct: 379 TKFHSMKKILRHLQREHPG 397
>sp|A2RNJ0|MURC_LACLM UDP-N-acetylmuramate--L-alanine ligase OS=Lactococcus lactis subsp.
cremoris (strain MG1363) GN=murC PE=3 SV=1
Length = 443
Score = 32.7 bits (73), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 10/78 (12%)
Query: 67 NVIYIVASAAAAERSDGHEAAVGDLVDKRKSGERTVEFNVISK--SNDRRVEIVIAAAVT 124
+ +Y+ +A D HE DL DK + + +E + +S +DR V
Sbjct: 365 DTVYLAQIYGSAREVDHHEITAQDLADKVRKPAKVIELDNVSPLLDHDR--------GVY 416
Query: 125 VLLGVGNRVLYKLALVPL 142
V +G GN Y++A L
Sbjct: 417 VFMGAGNIQKYEIAFEKL 434
>sp|Q02W92|MURC_LACLS UDP-N-acetylmuramate--L-alanine ligase OS=Lactococcus lactis subsp.
cremoris (strain SK11) GN=murC PE=3 SV=1
Length = 443
Score = 32.7 bits (73), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 10/78 (12%)
Query: 67 NVIYIVASAAAAERSDGHEAAVGDLVDKRKSGERTVEFNVISK--SNDRRVEIVIAAAVT 124
+ +Y+ +A D HE DL DK + + +E + +S +DR V
Sbjct: 365 DTVYLAQIYGSAREVDHHEITAQDLADKVRKPAKVIELDNVSPLLDHDR--------GVY 416
Query: 125 VLLGVGNRVLYKLALVPL 142
V +G GN Y++A L
Sbjct: 417 VFMGAGNIQKYEIAFEKL 434
>sp|Q9CE10|MURC_LACLA UDP-N-acetylmuramate--L-alanine ligase OS=Lactococcus lactis subsp.
lactis (strain IL1403) GN=murC PE=3 SV=2
Length = 443
Score = 32.7 bits (73), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 16/90 (17%)
Query: 67 NVIYIVASAAAAERSDGHEAAVGDLVDKRKSGERTVEFNVISK--SNDRRVEIVIAAAVT 124
+ +Y+ +A D HE DL DK + + ++ + +S +DR V
Sbjct: 365 DTVYLAQIYGSAREVDHHEITAQDLADKVRKPAKVIDLDNVSPLLDHDR--------GVY 416
Query: 125 VLLGVGNRVLYKLALVPLKHYPFFLAQLAT 154
V +G GN Y+LA L L+Q++T
Sbjct: 417 VFMGAGNIQKYELAFEKL------LSQVST 440
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.325 0.139 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 126,040,957
Number of Sequences: 539616
Number of extensions: 5110473
Number of successful extensions: 34338
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 53
Number of HSP's that attempted gapping in prelim test: 34275
Number of HSP's gapped (non-prelim): 97
length of query: 364
length of database: 191,569,459
effective HSP length: 119
effective length of query: 245
effective length of database: 127,355,155
effective search space: 31202012975
effective search space used: 31202012975
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 62 (28.5 bits)