Query 017885
Match_columns 364
No_of_seqs 142 out of 253
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 06:29:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017885.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017885hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i68_A Protein EMRE; transmemb 96.9 0.00043 1.5E-08 59.5 2.7 74 184-257 31-105 (137)
2 3b5d_A Multidrug transporter E 96.8 0.0005 1.7E-08 56.6 2.8 72 186-257 33-105 (110)
3 2hac_A T-cell surface glycopro 20.0 49 0.0017 21.5 1.6 28 211-238 4-31 (33)
4 1ans_A Neurotoxin III; NMR {An 8.4 1.6E+02 0.0054 18.0 1.4 15 348-362 10-24 (27)
5 1oo0_A MAGO nashi protein; RNA 7.0 1.2E+02 0.0041 26.0 0.6 20 49-68 27-46 (147)
6 4b4a_A TATC, SEC-independent p 4.5 1.8E+03 0.06 19.8 7.8 40 166-215 171-210 (249)
7 3b9w_A Ammonium transporter fa 3.0 2.5E+03 0.087 20.3 7.0 20 303-322 293-312 (407)
8 1f52_A Glutamine synthetase; A 2.8 5.3E+02 0.018 25.5 1.7 72 3-90 317-388 (468)
9 2llm_A Amyloid beta A4 protein 3.9 3.1E+02 0.011 18.7 0.0 19 216-234 25-43 (43)
10 3ng0_A Glutamine synthetase; G 2.7 8E+02 0.027 24.3 3.0 72 3-90 320-392 (473)
No 1
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=96.86 E-value=0.00043 Score=59.50 Aligned_cols=74 Identities=22% Similarity=0.156 Sum_probs=50.9
Q ss_pred cceehhhHHHHHHHHHHHHHhhhccccHHHHh-cchhHHHHHHHHHHHhcCcccccccchhhheeeeeeEEeecC
Q 017885 184 APFVAVGLLEALAAATGMAAGAILSGASIPIL-SQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVASG 257 (364)
Q Consensus 184 ~~f~i~GllD~~a~~L~~ia~~yts~s~~~mL-~qs~IpfT~llS~iFLkrRy~~~q~lGv~ivliGvivv~~s~ 257 (364)
+++++..++-.++.++...++.+.|.+....+ .+..++++++++++|++++.+..|++|++++++|++++...+
T Consensus 31 ~~~~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~ 105 (137)
T 2i68_A 31 WPSVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (137)
T ss_dssp ---CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 34455556778888888889899999977655 999999999999999999999999999999999999876543
No 2
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=96.85 E-value=0.0005 Score=56.57 Aligned_cols=72 Identities=21% Similarity=0.142 Sum_probs=60.7
Q ss_pred eehhhHHHHHHHHHHHHHhhhccccHHHHh-cchhHHHHHHHHHHHhcCcccccccchhhheeeeeeEEeecC
Q 017885 186 FVAVGLLEALAAATGMAAGAILSGASIPIL-SQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVASG 257 (364)
Q Consensus 186 f~i~GllD~~a~~L~~ia~~yts~s~~~mL-~qs~IpfT~llS~iFLkrRy~~~q~lGv~ivliGvivv~~s~ 257 (364)
.+...++-.++.++...++.+.|.+...-+ ++..+.++.+++++|+|++.+..|++|+.++++|++++...+
T Consensus 33 ~~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~ 105 (110)
T 3b5d_A 33 SVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 334445567777788888889999988655 999999999999999999999999999999999999876543
No 3
>2hac_A T-cell surface glycoprotein CD3 zeta chain; transmembrane, alpha helix, membrane protein; NMR {Homo sapiens}
Probab=20.02 E-value=49 Score=21.45 Aligned_cols=28 Identities=14% Similarity=0.447 Sum_probs=23.0
Q ss_pred HHHHhcchhHHHHHHHHHHHhcCccccc
Q 017885 211 SIPILSQTFLVWQILLSIIFLGRRYRVN 238 (364)
Q Consensus 211 ~~~mL~qs~IpfT~llS~iFLkrRy~~~ 238 (364)
+=-+|++......+++..+|+|.|+...
T Consensus 4 lCYiLDgiL~iYgii~T~Ly~R~K~~~~ 31 (33)
T 2hac_A 4 LCYLLDGILFIYGVILTALFLRVKFSRS 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSTTC
T ss_pred eEeehHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3457888899999999999999888753
No 4
>1ans_A Neurotoxin III; NMR {Anemonia sulcata} SCOP: g.11.1.1
Probab=8.37 E-value=1.6e+02 Score=17.95 Aligned_cols=15 Identities=13% Similarity=0.169 Sum_probs=12.9
Q ss_pred hhhcCCCCCCCCCCC
Q 017885 348 ACFLNLGTLSSGKLQ 362 (364)
Q Consensus 348 ~C~~g~~ti~~gC~g 362 (364)
.|+.|+|--.+||.|
T Consensus 10 gCpWGQ~~~~~GCSg 24 (27)
T 1ans_A 10 GCPWGQNCYPEGCSG 24 (27)
T ss_dssp TCSSSCSSCSSCSSS
T ss_pred CCccccccccccCcC
Confidence 588899988899987
No 5
>1oo0_A MAGO nashi protein; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.232.1.1 PDB: 1rk8_B 2x1g_B 1hl6_B 2j0s_C* 2j0q_C* 2hyi_A* 2xb2_C* 3ex7_A* 1p27_A
Probab=7.04 E-value=1.2e+02 Score=25.95 Aligned_cols=20 Identities=50% Similarity=0.818 Sum_probs=13.6
Q ss_pred EecCCccccccCCCCCCCch
Q 017885 49 FRSSKRNYYHNNSNYKNNNV 68 (364)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~ 68 (364)
+|+.-|--|-|||||||.+-
T Consensus 27 fr~dG~lrYaNnSnYknd~~ 46 (147)
T 1oo0_A 27 FRPDGKLRYANNSNYKNDTM 46 (147)
T ss_dssp ECTTSEEEEEEECCTTSSCC
T ss_pred ecCCCeEEEeccCCCcCCee
Confidence 34444445778999999864
No 6
>4b4a_A TATC, SEC-independent protein translocase protein TATC; transport protein, TAT secretion system, protein translocati; HET: LMN; 3.50A {Aquifex aeolicus}
Probab=4.49 E-value=1.8e+03 Score=19.78 Aligned_cols=40 Identities=20% Similarity=0.209 Sum_probs=22.8
Q ss_pred HHHHhcCCcchhhhcCCCcceehhhHHHHHHHHHHHHHhhhccccHHHHh
Q 017885 166 YLRYHAGIVTDEMLSMPKAPFVAVGLLEALAAATGMAAGAILSGASIPIL 215 (364)
Q Consensus 166 ~~r~~~~~i~~e~~~~p~~~f~i~GllD~~a~~L~~ia~~yts~s~~~mL 215 (364)
+...+.|.++.+... .+||+++++. .++|+.-|| ....++
T Consensus 171 ~~L~~~Giv~~~~l~-~~Rr~~iv~~--------~v~aAiiTP-D~~sq~ 210 (249)
T 4b4a_A 171 YVLQKAGVITPEQLA-SFRKYFIVIA--------FVIGAIIAP-DVSTQV 210 (249)
T ss_dssp HHHHHTTSSCHHHHH-HHHHHHHHHH--------HHHHHHHCS-SHHHHH
T ss_pred HHHHHcCCcCHHHHH-HHhHHHHHHH--------HHHHHHHCC-cHHHHH
Confidence 344566777665432 2478888873 445556677 544433
No 7
>3b9w_A Ammonium transporter family; membrane protein, ammonia transport, rhesus protein, transpo protein; HET: BOG; 1.30A {Nitrosomonas europaea} PDB: 3bhs_A 3b9y_A* 3b9z_A*
Probab=2.99 E-value=2.5e+03 Score=20.34 Aligned_cols=20 Identities=0% Similarity=-0.026 Sum_probs=13.9
Q ss_pred CCChhhHHHHHHHHHHHHHH
Q 017885 303 GVDLFVVNSYGSAFQALFIC 322 (364)
Q Consensus 303 ~ld~~~v~~w~~~fq~l~~~ 322 (364)
.+|++.+-+..++++.+...
T Consensus 293 ~l~a~~vHgv~Gi~G~l~~g 312 (407)
T 3b9w_A 293 TCGVHNLHGLPGLLGGFSAI 312 (407)
T ss_dssp TTCHHHHTTHHHHHHHHHHH
T ss_pred CCCCeecchHHHHHHHHHHH
Confidence 39999888766666655543
No 8
>1f52_A Glutamine synthetase; ADP, MPD, ligase; HET: ADP; 2.49A {Salmonella typhimurium} SCOP: d.15.9.1 d.128.1.1 PDB: 1f1h_A* 1fpy_A* 1lgr_A* 2lgs_A* 2gls_A
Probab=2.78 E-value=5.3e+02 Score=25.55 Aligned_cols=72 Identities=21% Similarity=0.228 Sum_probs=39.5
Q ss_pred ccccccccccCCCccccCCCCCCCCCceeeeeeccccccCCCceeEEecCCccccccCCCCCCCchhhhhhhhhhhhccc
Q 017885 3 SCYSRLTAGSAASHSLLQSPKPSPKAPVSCYLRDHHANQRLPTTLLFRSSKRNYYHNNSNYKNNNVIYIVASAAAAERSD 82 (364)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (364)
..|+||.-|.-||..-+-+. .||...|-+|........| +=+|+.-- +-| -|+.-|+--++.-|
T Consensus 317 NSYkRL~pg~eAP~~i~wg~-~NRsa~iRiP~~~~~~~~r----iE~R~pd~----------~aN-PYLalaailaagL~ 380 (468)
T 1f52_A 317 NSYKRLVPGYEAPVMLAYSA-RNRSASIRIPVVASPKARR----IEVRFPDP----------AAN-PYLCFAALLMAGLD 380 (468)
T ss_dssp GGGGTSSSCSSCCCEEEEES-SCTTEEEECCCCSCGGGCC----EEECCCCT----------TSC-HHHHHHHHHHHHHH
T ss_pred cchhccCCCCcCcCcceecc-CCcccceeeCCCCCCCCCE----EEeCCCCC----------CCC-HHHHHHHHHHHHHH
Confidence 46899988877776654443 5664444333210001112 22222221 112 58877777788889
Q ss_pred cchhccCC
Q 017885 83 GHEAAVGD 90 (364)
Q Consensus 83 ~~~~~~~~ 90 (364)
|.+++.++
T Consensus 381 GI~~~l~p 388 (468)
T 1f52_A 381 GIKNKIHP 388 (468)
T ss_dssp HHHTTCCC
T ss_pred HHHhcCCC
Confidence 98888654
No 9
>2llm_A Amyloid beta A4 protein; alzheimer'S disease, protein fibril; NMR {Homo sapiens} PDB: 2loh_A
Probab=3.94 E-value=3.1e+02 Score=18.69 Aligned_cols=19 Identities=11% Similarity=0.410 Sum_probs=11.9
Q ss_pred cchhHHHHHHHHHHHhcCc
Q 017885 216 SQTFLVWQILLSIIFLGRR 234 (364)
Q Consensus 216 ~qs~IpfT~llS~iFLkrR 234 (364)
.+..+-..+++|.+++|||
T Consensus 25 ~gVai~~vIVvsl~mlRrr 43 (43)
T 2llm_A 25 GGVVIATVIVITLVMLKKK 43 (43)
Confidence 4444555566777777775
No 10
>3ng0_A Glutamine synthetase; GSI, nitrogen metabolism, synec ligase; HET: ANP; 2.80A {Synechocystis SP}
Probab=2.74 E-value=8e+02 Score=24.29 Aligned_cols=72 Identities=26% Similarity=0.336 Sum_probs=45.5
Q ss_pred ccccccccccCCCccccCCCCCCCCCceeeeee-ccccccCCCceeEEecCCccccccCCCCCCCchhhhhhhhhhhhcc
Q 017885 3 SCYSRLTAGSAASHSLLQSPKPSPKAPVSCYLR-DHHANQRLPTTLLFRSSKRNYYHNNSNYKNNNVIYIVASAAAAERS 81 (364)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (364)
..|+||.-|.-||..-+-+. .||-..|-+|-. .+....| +=+|++-- +-| -|+.-|+--++.-
T Consensus 320 NSYkRL~pg~~AP~~~~Wg~-~NRsa~iRip~~~~~~~~~R----iE~R~pd~----------~aN-PYLa~Aa~LaAGl 383 (473)
T 3ng0_A 320 NSYKRLVPGFEAPVNLAYSQ-GNRSASVRIPLSGGNPKAKR----LEFRCPDA----------TSN-PYLAFAAMLCAGI 383 (473)
T ss_dssp THHHHBBTTTBCCCBCCEEE-SCTTSSEEECCCSSCGGGCC----EEECSCCT----------TSC-HHHHHHHHHHHHH
T ss_pred chhhcccCCCcCccceeeec-cCCcCceeeeccCCCCCcce----EEeecCCC----------CCC-HHHHHHHHHHHHH
Confidence 57999999988888777665 788887776542 1111222 22333331 111 5777777778888
Q ss_pred ccchhccCC
Q 017885 82 DGHEAAVGD 90 (364)
Q Consensus 82 ~~~~~~~~~ 90 (364)
||.+++.++
T Consensus 384 dGI~~~l~p 392 (473)
T 3ng0_A 384 DGIKNQIDP 392 (473)
T ss_dssp HHHHHCCCC
T ss_pred HHHHhCCCC
Confidence 998888543
Done!