Query 017885
Match_columns 364
No_of_seqs 142 out of 253
Neff 5.7
Searched_HMMs 13730
Date Mon Mar 25 06:29:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017885.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/017885hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2r6gf1 e.70.1.1 (F:13-260) Ma 18.4 21 0.0015 30.9 1.7 66 184-253 3-68 (248)
2 d1q90a3 f.23.23.1 (A:248-292) 6.5 3.1E+02 0.023 17.2 4.5 30 267-296 3-32 (45)
3 d1rk8b_ d.232.1.1 (B:) Mago na 5.8 63 0.0046 25.4 0.2 14 55-68 30-43 (141)
4 d2bvca2 d.128.1.1 (A:105-478) 5.1 1.2E+02 0.0089 27.0 1.8 68 3-90 221-293 (374)
5 d1vf5c3 f.23.23.1 (C:250-286) 4.3 2.6E+02 0.019 16.8 2.4 29 267-295 4-32 (37)
6 d1ansa_ g.11.1.1 (A:) Neurotox 4.1 1.9E+02 0.014 15.9 1.4 14 349-362 11-24 (27)
7 d1emxa_ g.3.6.2 (A:) Heteropda 3.3 2.6E+02 0.019 15.9 1.5 12 353-364 10-21 (30)
8 d1iroa_ g.41.5.1 (A:) Rubredox 3.1 1.1E+02 0.0081 20.0 -0.3 15 328-342 22-36 (53)
9 d2dsxa1 g.41.5.1 (A:1-52) Rubr 2.9 1.2E+02 0.0087 19.7 -0.3 14 329-342 23-36 (52)
10 d1cixa_ g.3.6.2 (A:) Tachystat 2.8 2.3E+02 0.016 17.2 1.0 19 344-362 6-26 (44)
No 1
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=18.39 E-value=21 Score=30.86 Aligned_cols=66 Identities=20% Similarity=0.190 Sum_probs=45.4
Q ss_pred cceehhhHHHHHHHHHHHHHhhhccccHHHHhcchhHHHHHHHHHHHhcCcccccccchhhheeeeeeEE
Q 017885 184 APFVAVGLLEALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIIT 253 (364)
Q Consensus 184 ~~f~i~GllD~~a~~L~~ia~~yts~s~~~mL~qs~IpfT~llS~iFLkrRy~~~q~lGv~ivliGvivv 253 (364)
.|++++|++|+++.+..+..... ++- .+-..++..++++-++|+.||...++|+-=.++++.++++
T Consensus 3 lK~~ll~l~~a~~~~~~~~~~~~--~~~--~~a~~~~~~~~~~~~vy~s~r~~p~kyi~PG~~~l~~Fvi 68 (248)
T d2r6gf1 3 LKWSVLGLLGLLVGYLVVLMYAQ--GEY--LFAITTLILSSAGLYIFANRKAYAWRYVYPGMAGMGLFVL 68 (248)
T ss_dssp CTHHHHHHHHHHHHHTHHHHHGG--GCH--HHHHHHHHHHHHHHHHHSSSCCTTHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc--chH--HHHHHHHHHHHheEEEEEccCccceehhhhHHHHHHHHHH
Confidence 46789999999998876655442 221 1222556777788899999999988888665555555543
No 2
>d1q90a3 f.23.23.1 (A:248-292) Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=6.51 E-value=3.1e+02 Score=17.15 Aligned_cols=30 Identities=30% Similarity=0.191 Sum_probs=25.2
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017885 267 AGIFWSLLMIVSFLLQAADTVLKEVIFLDA 296 (364)
Q Consensus 267 ~~ll~~lL~ils~i~~Ais~V~eE~~fk~~ 296 (364)
+.+.|.++++.+-++.-+-.|+|.|.|.+.
T Consensus 3 ~Rv~gll~F~~~v~laQi~LVLKKKQfEKV 32 (45)
T d1q90a3 3 ARIQGLLVFFSFVLLTQVLLVLKKKQFEKV 32 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346788888999999999999999988854
No 3
>d1rk8b_ d.232.1.1 (B:) Mago nashi protein {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=5.81 E-value=63 Score=25.41 Aligned_cols=14 Identities=57% Similarity=0.831 Sum_probs=3.5
Q ss_pred cccccCCCCCCCch
Q 017885 55 NYYHNNSNYKNNNV 68 (364)
Q Consensus 55 ~~~~~~~~~~~~~~ 68 (364)
--|-|||||||.+-
T Consensus 30 lrYaNnSnYknd~~ 43 (141)
T d1rk8b_ 30 LRYANNSNYKNDTM 43 (141)
T ss_dssp EEEEC--------C
T ss_pred eeeecccCccchhh
Confidence 44678999999753
No 4
>d2bvca2 d.128.1.1 (A:105-478) Glutamine synthetase, C-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=5.08 E-value=1.2e+02 Score=27.04 Aligned_cols=68 Identities=24% Similarity=0.273 Sum_probs=44.0
Q ss_pred ccccccccccCCCccccCCCCCCCCCceeeeeec-----cccccCCCceeEEecCCccccccCCCCCCCchhhhhhhhhh
Q 017885 3 SCYSRLTAGSAASHSLLQSPKPSPKAPVSCYLRD-----HHANQRLPTTLLFRSSKRNYYHNNSNYKNNNVIYIVASAAA 77 (364)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (364)
.+||||..|..+|...+-.. .||...|-.+..- .++-.|+| . ..-.-|+.-|+--
T Consensus 221 NSY~Rl~~~~~ap~~~~Wg~-~nR~~~iRi~~~~~~~~~~riE~R~~--------d-----------a~aNPYL~lAail 280 (374)
T d2bvca2 221 NSYKRLVPGYEAPINLVYSQ-RNRSACVRIPITGSNPKAKRLEFRSP--------D-----------SSGNPYLAFSAML 280 (374)
T ss_dssp THHHHSSTTSSSCSBCCEEE-TCTTSSEEECCCCSCTTSCCEEECSC--------C-----------SSSCHHHHHHHHH
T ss_pred chhhhcCCCCccceEEeecc-CccccceeeccccCCCccceEEecCC--------C-----------ccccHHHHHHHHH
Confidence 57999999999988776665 6777666654321 22333433 1 1111588777777
Q ss_pred hhccccchhccCC
Q 017885 78 AERSDGHEAAVGD 90 (364)
Q Consensus 78 ~~~~~~~~~~~~~ 90 (364)
++.-||.+++..+
T Consensus 281 aagl~Gi~~~l~p 293 (374)
T d2bvca2 281 MAGLDGIKNKIEP 293 (374)
T ss_dssp HHHHHHHHTTCCC
T ss_pred HHhhhhhhhcccc
Confidence 8888898887543
No 5
>d1vf5c3 f.23.23.1 (C:250-286) Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor {Mastigocladus laminosus [TaxId: 83541]}
Probab=4.29 E-value=2.6e+02 Score=16.85 Aligned_cols=29 Identities=17% Similarity=0.267 Sum_probs=23.9
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017885 267 AGIFWSLLMIVSFLLQAADTVLKEVIFLD 295 (364)
Q Consensus 267 ~~ll~~lL~ils~i~~Ais~V~eE~~fk~ 295 (364)
+.+.|.+.++++.++.-+-.|+|.|.|.+
T Consensus 4 ~Rv~gl~~F~~~v~laQi~lVlKKKQ~Ek 32 (37)
T d1vf5c3 4 NRVKWMIAFICLVMLAQLMLILKKKQVEK 32 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTGGGCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45778888999999999999999986653
No 6
>d1ansa_ g.11.1.1 (A:) Neurotoxin III (ATX III) {Sea anemone (Anemonia sulcata) [TaxId: 6108]}
Probab=4.05 E-value=1.9e+02 Score=15.94 Aligned_cols=14 Identities=14% Similarity=0.169 Sum_probs=10.7
Q ss_pred hhcCCCCCCCCCCC
Q 017885 349 CFLNLGTLSSGKLQ 362 (364)
Q Consensus 349 C~~g~~ti~~gC~g 362 (364)
|-.|+|--.+||.|
T Consensus 11 cpwgqncypegcsg 24 (27)
T d1ansa_ 11 CPWGQNCYPEGCSG 24 (27)
T ss_dssp CSSSCSSCSSCSSS
T ss_pred CccccccccCcccC
Confidence 55677878888887
No 7
>d1emxa_ g.3.6.2 (A:) Heteropdatoxin 2, hptx2 {Giant crab spider (Heteropoda venatoria) [TaxId: 152925]}
Probab=3.30 E-value=2.6e+02 Score=15.88 Aligned_cols=12 Identities=8% Similarity=-0.017 Sum_probs=7.6
Q ss_pred CCCCCCCCCCCC
Q 017885 353 LGTLSSGKLQFI 364 (364)
Q Consensus 353 ~~ti~~gC~g~~ 364 (364)
-.+....|+||+
T Consensus 10 c~t~adcceg~v 21 (30)
T d1emxa_ 10 CDTNADCCEGYV 21 (30)
T ss_dssp TCSTTCCCTTBC
T ss_pred CCCCcchhhhhh
Confidence 345556688875
No 8
>d1iroa_ g.41.5.1 (A:) Rubredoxin {Clostridium pasteurianum [TaxId: 1501]}
Probab=3.08 E-value=1.1e+02 Score=19.96 Aligned_cols=15 Identities=20% Similarity=0.109 Sum_probs=10.8
Q ss_pred cccccCCCCCCchHH
Q 017885 328 LSKLWGIPFSQLPIY 342 (364)
Q Consensus 328 ~~~~~g~~f~~lp~~ 342 (364)
....+|.+|.++|+.
T Consensus 22 ~gi~pGT~F~~LP~d 36 (53)
T d1iroa_ 22 NGVNPGTDFKDIPDD 36 (53)
T ss_dssp GTBCTTCCGGGSCTT
T ss_pred cCCCCCCCHHHCCCC
Confidence 345578889998865
No 9
>d2dsxa1 g.41.5.1 (A:1-52) Rubredoxin {Desulfovibrio gigas [TaxId: 879]}
Probab=2.88 E-value=1.2e+02 Score=19.72 Aligned_cols=14 Identities=29% Similarity=0.233 Sum_probs=10.1
Q ss_pred ccccCCCCCCchHH
Q 017885 329 SKLWGIPFSQLPIY 342 (364)
Q Consensus 329 ~~~~g~~f~~lp~~ 342 (364)
...+|.+|.+||+.
T Consensus 23 gi~pGT~F~~LP~~ 36 (52)
T d2dsxa1 23 GIKPGTKFEDLPDD 36 (52)
T ss_dssp TBCTTCCGGGSCTT
T ss_pred CCCCCCCHHHCCCC
Confidence 34577888888855
No 10
>d1cixa_ g.3.6.2 (A:) Tachystatin {Japanese horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]}
Probab=2.82 E-value=2.3e+02 Score=17.22 Aligned_cols=19 Identities=11% Similarity=-0.024 Sum_probs=11.7
Q ss_pred HhhhhhhcCCCC--CCCCCCC
Q 017885 344 RDGAACFLNLGT--LSSGKLQ 362 (364)
Q Consensus 344 ~~Gf~C~~g~~t--i~~gC~g 362 (364)
..||.|..-... .++.|+|
T Consensus 6 lqgfncvvrsyglptipccrg 26 (44)
T d1cixa_ 6 LQGFNCVVRSYGLPTIPCCRG 26 (44)
T ss_dssp CTTEEECSCCTTSCSCCCCTT
T ss_pred eccccEEEEccCCCCccccCC
Confidence 468888644332 4567877
Done!