Query 017886
Match_columns 364
No_of_seqs 126 out of 1075
Neff 5.3
Searched_HMMs 46136
Date Fri Mar 29 04:16:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017886.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017886hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02821 1-hydroxy-2-methyl-2- 100.0 2E-116 5E-121 884.2 37.2 364 1-364 81-445 (460)
2 PRK13371 4-hydroxy-3-methylbut 100.0 6E-111 1E-115 834.7 36.4 358 1-364 14-371 (387)
3 PRK12360 4-hydroxy-3-methylbut 100.0 5E-100 1E-104 733.1 31.1 273 25-364 1-274 (281)
4 TIGR00216 ispH_lytB (E)-4-hydr 100.0 1.7E-99 4E-104 729.3 30.4 271 26-364 1-273 (280)
5 PRK01045 ispH 4-hydroxy-3-meth 100.0 4E-99 9E-104 732.3 31.8 272 25-364 1-275 (298)
6 COG0761 lytB 4-Hydroxy-3-methy 100.0 5.7E-98 1E-102 712.9 30.0 275 24-364 1-277 (294)
7 PF02401 LYTB: LytB protein; 100.0 4.9E-99 1E-103 727.0 22.0 272 27-364 1-274 (281)
8 PRK00087 4-hydroxy-3-methylbut 100.0 6.2E-91 1.4E-95 735.7 31.2 270 25-364 1-271 (647)
9 PF02401 LYTB: LytB protein; 96.5 0.049 1.1E-06 53.6 13.2 170 35-242 93-280 (281)
10 PRK01045 ispH 4-hydroxy-3-meth 94.3 0.55 1.2E-05 46.7 11.5 170 35-242 95-281 (298)
11 TIGR00216 ispH_lytB (E)-4-hydr 92.9 1.1 2.4E-05 44.2 10.8 169 36-242 96-279 (280)
12 PRK12360 4-hydroxy-3-methylbut 92.1 1.4 3E-05 43.5 10.5 170 35-242 98-280 (281)
13 cd01537 PBP1_Repressors_Sugar_ 91.5 1.9 4E-05 38.6 10.0 90 219-318 1-90 (264)
14 COG1587 HemD Uroporphyrinogen- 87.8 6.3 0.00014 37.4 10.8 152 5-183 12-193 (248)
15 PRK13371 4-hydroxy-3-methylbut 85.8 7.8 0.00017 40.0 10.8 110 119-242 263-377 (387)
16 PRK00087 4-hydroxy-3-methylbut 85.0 6.2 0.00013 43.0 10.3 170 35-242 95-277 (647)
17 PF02602 HEM4: Uroporphyrinoge 84.7 15 0.00033 33.5 11.4 149 7-181 1-184 (231)
18 PF13407 Peripla_BP_4: Peripla 82.1 11 0.00024 34.4 9.4 88 220-316 1-89 (257)
19 PF02571 CbiJ: Precorrin-6x re 80.8 7.4 0.00016 37.5 8.0 107 68-180 13-124 (249)
20 cd01391 Periplasmic_Binding_Pr 80.7 13 0.00028 32.6 9.0 93 220-319 2-94 (269)
21 PRK08057 cobalt-precorrin-6x r 78.4 10 0.00022 36.6 8.1 108 66-180 13-123 (248)
22 COG1023 Gnd Predicted 6-phosph 77.5 26 0.00057 34.5 10.5 108 40-154 10-122 (300)
23 cd06320 PBP1_allose_binding Pe 77.3 18 0.00039 33.3 9.2 89 220-316 2-91 (275)
24 cd01536 PBP1_ABC_sugar_binding 76.9 29 0.00062 31.2 10.3 90 220-318 2-91 (267)
25 cd06310 PBP1_ABC_sugar_binding 76.3 22 0.00048 32.6 9.5 90 219-316 1-91 (273)
26 PLN02821 1-hydroxy-2-methyl-2- 75.9 50 0.0011 35.0 12.7 111 118-242 336-451 (460)
27 PF03446 NAD_binding_2: NAD bi 75.4 12 0.00025 33.1 7.1 97 41-148 12-116 (163)
28 PRK05752 uroporphyrinogen-III 75.0 61 0.0013 30.6 12.3 116 4-124 13-158 (255)
29 cd08191 HHD 6-hydroxyhexanoate 74.5 16 0.00035 37.0 8.7 79 218-306 23-104 (386)
30 PF14542 Acetyltransf_CG: GCN5 73.9 3.7 8.1E-05 32.5 3.2 34 102-136 34-71 (78)
31 cd06319 PBP1_ABC_sugar_binding 73.8 35 0.00075 31.3 10.1 80 229-316 10-89 (277)
32 PRK11070 ssDNA exonuclease Rec 73.7 19 0.00041 39.0 9.4 107 37-157 53-164 (575)
33 cd04509 PBP1_ABC_transporter_G 72.5 33 0.00072 31.0 9.6 59 256-317 42-101 (299)
34 PRK09453 phosphodiesterase; Pr 72.4 28 0.00061 31.1 8.9 45 41-85 14-72 (182)
35 cd06312 PBP1_ABC_sugar_binding 71.6 31 0.00067 31.8 9.3 91 219-316 1-91 (271)
36 TIGR00109 hemH ferrochelatase. 71.5 39 0.00085 33.6 10.5 88 36-143 132-223 (322)
37 PRK13600 putative ribosomal pr 71.3 6.5 0.00014 32.1 4.0 42 280-321 28-69 (84)
38 PRK05928 hemD uroporphyrinogen 71.0 43 0.00093 30.5 10.0 115 4-123 11-152 (249)
39 cd06308 PBP1_sensor_kinase_lik 70.4 43 0.00093 30.8 9.9 89 220-316 2-90 (270)
40 cd06342 PBP1_ABC_LIVBP_like Ty 70.2 7.6 0.00017 36.9 5.0 59 255-316 41-99 (334)
41 PRK14072 6-phosphofructokinase 68.9 7.8 0.00017 40.2 5.1 47 267-313 89-138 (416)
42 cd06349 PBP1_ABC_ligand_bindin 68.7 8.8 0.00019 37.0 5.1 56 255-312 41-96 (340)
43 cd06301 PBP1_rhizopine_binding 67.7 41 0.0009 30.7 9.2 89 219-316 1-90 (272)
44 PF10087 DUF2325: Uncharacteri 67.5 15 0.00033 29.8 5.5 51 264-315 30-83 (97)
45 TIGR03590 PseG pseudaminic aci 67.2 1.2E+02 0.0027 29.1 19.3 42 39-83 17-58 (279)
46 cd06273 PBP1_GntR_like_1 This 65.2 69 0.0015 29.1 10.1 85 220-316 2-87 (268)
47 cd06331 PBP1_AmiC_like Type I 65.0 8.6 0.00019 37.0 4.2 56 255-312 41-96 (333)
48 PRK05282 (alpha)-aspartyl dipe 64.9 15 0.00031 35.3 5.7 93 218-355 32-124 (233)
49 cd06318 PBP1_ABC_sugar_binding 64.5 69 0.0015 29.4 10.0 87 220-316 2-89 (282)
50 PF06414 Zeta_toxin: Zeta toxi 63.8 13 0.00029 33.7 5.0 43 109-151 83-126 (199)
51 cd06344 PBP1_ABC_ligand_bindin 63.3 12 0.00027 36.0 5.0 57 255-313 40-96 (332)
52 PF02896 PEP-utilizers_C: PEP- 62.9 13 0.00028 36.9 5.1 51 32-83 226-276 (293)
53 PF00532 Peripla_BP_1: Peripla 62.6 1.1E+02 0.0023 29.4 11.2 127 219-358 3-132 (279)
54 TIGR03127 RuMP_HxlB 6-phospho 61.2 66 0.0014 28.5 9.0 23 94-116 70-93 (179)
55 cd06335 PBP1_ABC_ligand_bindin 61.0 15 0.00032 35.8 5.1 56 255-312 41-96 (347)
56 PRK10444 UMP phosphatase; Prov 60.6 78 0.0017 30.2 9.8 30 50-83 77-106 (248)
57 PRK09189 uroporphyrinogen-III 60.2 45 0.00097 31.1 8.0 121 4-129 10-156 (240)
58 cd06323 PBP1_ribose_binding Pe 60.0 79 0.0017 28.6 9.5 81 228-317 9-90 (268)
59 KOG0238 3-Methylcrotonyl-CoA c 59.8 67 0.0015 34.8 9.8 153 5-180 9-176 (670)
60 cd06356 PBP1_Amide_Urea_BP_lik 59.6 11 0.00024 36.5 4.0 57 255-313 41-97 (334)
61 cd06353 PBP1_BmpA_Med_like Per 59.5 70 0.0015 30.4 9.3 88 266-359 42-134 (258)
62 COG3340 PepE Peptidase E [Amin 59.2 7 0.00015 37.4 2.4 97 218-355 33-129 (224)
63 PRK10014 DNA-binding transcrip 58.9 1.1E+02 0.0025 29.1 10.8 126 218-355 65-192 (342)
64 PRK06555 pyrophosphate--fructo 58.6 18 0.00039 37.6 5.4 46 268-313 99-147 (403)
65 PLN02251 pyrophosphate-depende 58.0 19 0.00041 39.0 5.7 54 267-320 176-230 (568)
66 cd06281 PBP1_LacI_like_5 Ligan 57.9 75 0.0016 29.1 9.0 88 220-318 2-90 (269)
67 PRK10653 D-ribose transporter 57.6 1.3E+02 0.0027 28.4 10.7 89 218-316 27-116 (295)
68 cd06345 PBP1_ABC_ligand_bindin 57.4 18 0.00039 34.9 5.0 62 256-319 42-104 (344)
69 TIGR00715 precor6x_red precorr 57.2 41 0.00088 32.6 7.3 103 68-180 13-121 (256)
70 TIGR02069 cyanophycinase cyano 56.5 21 0.00046 34.4 5.2 53 272-355 75-127 (250)
71 TIGR03190 benz_CoA_bzdN benzoy 56.4 23 0.00051 35.9 5.8 107 34-151 201-321 (377)
72 TIGR02634 xylF D-xylose ABC tr 56.2 68 0.0015 30.6 8.7 85 224-317 4-89 (302)
73 cd01413 SIR2_Af2 SIR2_Af2: Arc 56.2 27 0.00058 32.9 5.8 58 255-315 148-206 (222)
74 cd06286 PBP1_CcpB_like Ligand- 55.9 1E+02 0.0022 27.9 9.5 113 228-354 9-123 (260)
75 cd06268 PBP1_ABC_transporter_L 55.6 25 0.00053 31.9 5.3 60 256-318 42-101 (298)
76 cd06338 PBP1_ABC_ligand_bindin 55.6 23 0.00049 34.0 5.3 61 255-317 45-105 (345)
77 TIGR02477 PFKA_PPi diphosphate 55.5 20 0.00044 38.5 5.4 54 267-320 147-201 (539)
78 cd08551 Fe-ADH iron-containing 55.2 57 0.0012 32.6 8.3 77 218-304 24-103 (370)
79 cd06315 PBP1_ABC_sugar_binding 55.1 97 0.0021 28.9 9.4 88 219-316 2-90 (280)
80 cd06328 PBP1_SBP_like_2 Peripl 54.6 20 0.00044 34.7 4.8 64 255-320 42-106 (333)
81 COG2099 CobK Precorrin-6x redu 54.4 58 0.0012 32.0 7.8 116 57-180 4-123 (257)
82 PF00762 Ferrochelatase: Ferro 54.1 44 0.00096 33.3 7.2 94 31-143 123-219 (316)
83 cd06346 PBP1_ABC_ligand_bindin 53.8 16 0.00035 34.9 3.9 57 255-313 41-98 (312)
84 cd06311 PBP1_ABC_sugar_binding 53.6 1.1E+02 0.0024 28.0 9.5 92 220-316 2-94 (274)
85 PF02254 TrkA_N: TrkA-N domain 53.5 25 0.00054 28.5 4.5 72 100-179 2-76 (116)
86 cd06367 PBP1_iGluR_NMDA N-term 53.3 45 0.00097 32.6 7.0 58 254-313 36-96 (362)
87 cd06282 PBP1_GntR_like_2 Ligan 53.2 1.3E+02 0.0028 27.1 9.7 76 231-316 12-88 (266)
88 PF00389 2-Hacid_dh: D-isomer 53.2 23 0.00049 30.0 4.4 83 58-147 1-86 (133)
89 cd06306 PBP1_TorT-like TorT-li 52.8 95 0.0021 28.7 8.9 87 220-315 2-89 (268)
90 cd01979 Pchlide_reductase_N Pc 52.1 2.6E+02 0.0056 28.4 12.5 105 24-129 118-233 (396)
91 cd06267 PBP1_LacI_sugar_bindin 52.0 1.6E+02 0.0035 26.1 10.0 120 220-356 2-127 (264)
92 cd06339 PBP1_YraM_LppC_lipopro 52.0 52 0.0011 32.1 7.3 96 255-354 35-133 (336)
93 PRK09860 putative alcohol dehy 51.8 63 0.0014 32.8 8.1 79 218-306 32-113 (383)
94 PRK15408 autoinducer 2-binding 51.8 1.2E+02 0.0026 30.1 9.8 128 217-356 23-159 (336)
95 cd01538 PBP1_ABC_xylose_bindin 51.6 1.7E+02 0.0037 27.3 10.5 87 220-316 2-89 (288)
96 cd06343 PBP1_ABC_ligand_bindin 51.5 78 0.0017 30.7 8.4 63 255-319 48-111 (362)
97 cd07766 DHQ_Fe-ADH Dehydroquin 51.5 84 0.0018 30.8 8.6 87 218-316 24-113 (332)
98 cd06309 PBP1_YtfQ_like Peripla 51.4 89 0.0019 28.7 8.4 80 228-316 9-89 (273)
99 PLN03028 pyrophosphate--fructo 51.1 26 0.00057 38.3 5.4 53 268-320 160-213 (610)
100 cd08188 Fe-ADH4 Iron-containin 51.0 63 0.0014 32.7 7.8 79 218-306 29-110 (377)
101 TIGR01481 ccpA catabolite cont 50.9 2.1E+02 0.0045 27.2 11.1 125 218-355 60-186 (329)
102 cd01574 PBP1_LacI Ligand-bindi 50.9 1.4E+02 0.003 27.0 9.5 87 220-317 2-89 (264)
103 cd00861 ProRS_anticodon_short 50.7 22 0.00047 27.8 3.6 41 110-153 22-64 (94)
104 cd06302 PBP1_LsrB_Quorum_Sensi 50.3 1.5E+02 0.0032 28.1 9.9 87 220-316 2-90 (298)
105 cd06304 PBP1_BmpA_like Peripla 49.8 1.5E+02 0.0032 27.3 9.6 86 220-317 2-90 (260)
106 cd06355 PBP1_FmdD_like Peripla 49.5 22 0.00047 34.8 4.1 54 255-310 41-94 (348)
107 COG0276 HemH Protoheme ferro-l 49.4 39 0.00085 34.1 6.0 91 32-142 126-218 (320)
108 cd06354 PBP1_BmpA_PnrA_like Pe 49.3 1.5E+02 0.0032 27.6 9.6 115 228-355 12-131 (265)
109 COG0041 PurE Phosphoribosylcar 49.0 52 0.0011 30.1 6.1 32 100-153 35-66 (162)
110 cd01540 PBP1_arabinose_binding 49.0 1.3E+02 0.0028 27.8 9.1 86 220-316 2-88 (289)
111 PRK00035 hemH ferrochelatase; 49.0 2E+02 0.0042 28.5 10.8 85 41-142 138-223 (333)
112 PF15498 Dendrin: Nephrin and 48.9 3.7 7.9E-05 43.1 -1.4 33 99-131 378-410 (657)
113 PTZ00287 6-phosphofructokinase 48.6 29 0.00063 41.3 5.5 55 267-321 914-969 (1419)
114 PLN02884 6-phosphofructokinase 48.5 27 0.00059 36.3 4.8 45 269-313 131-178 (411)
115 COG1494 GlpX Fructose-1,6-bisp 48.4 12 0.00025 37.5 2.0 42 67-112 248-289 (332)
116 KOG2882 p-Nitrophenyl phosphat 48.4 52 0.0011 33.1 6.6 28 54-85 105-132 (306)
117 cd06329 PBP1_SBP_like_3 Peripl 48.2 17 0.00038 35.2 3.2 56 255-313 41-103 (342)
118 cd06382 PBP1_iGluR_Kainate N-t 48.2 26 0.00056 33.6 4.4 53 258-313 40-93 (327)
119 cd00765 Pyrophosphate_PFK Phos 48.0 32 0.0007 37.1 5.4 54 267-320 152-206 (550)
120 COG4821 Uncharacterized protei 47.8 56 0.0012 31.4 6.3 36 92-127 100-139 (243)
121 cd06337 PBP1_ABC_ligand_bindin 47.0 31 0.00068 33.8 4.9 56 256-313 44-99 (357)
122 cd06348 PBP1_ABC_ligand_bindin 47.0 32 0.0007 33.1 4.9 56 256-313 42-97 (344)
123 PRK14138 NAD-dependent deacety 46.9 38 0.00083 32.4 5.3 58 255-315 155-213 (244)
124 cd06314 PBP1_tmGBP Periplasmic 46.6 1.6E+02 0.0035 27.0 9.3 86 220-316 2-88 (271)
125 cd06340 PBP1_ABC_ligand_bindin 46.4 36 0.00079 33.1 5.2 58 256-315 45-102 (347)
126 COG1358 RPL8A Ribosomal protei 46.3 40 0.00087 29.1 4.8 51 268-321 33-84 (116)
127 COG0761 lytB 4-Hydroxy-3-methy 46.2 1.1E+02 0.0023 30.7 8.3 102 109-242 174-283 (294)
128 cd01539 PBP1_GGBP Periplasmic 46.2 1.6E+02 0.0034 28.0 9.5 89 220-316 2-91 (303)
129 PRK07085 diphosphate--fructose 46.2 36 0.00077 36.9 5.4 46 268-313 151-199 (555)
130 cd01410 SIRT7 SIRT7: Eukaryoti 45.8 50 0.0011 30.8 5.8 58 255-315 132-190 (206)
131 PRK10355 xylF D-xylose transpo 45.8 1.9E+02 0.0041 28.3 10.1 89 218-316 26-115 (330)
132 cd03146 GAT1_Peptidase_E Type 45.7 37 0.0008 31.5 4.9 94 218-355 32-125 (212)
133 cd06303 PBP1_LuxPQ_Quorum_Sens 45.6 1.3E+02 0.0028 28.0 8.6 86 220-313 2-90 (280)
134 PF01726 LexA_DNA_bind: LexA D 45.6 24 0.00053 27.1 3.1 39 102-147 19-57 (65)
135 cd05005 SIS_PHI Hexulose-6-pho 45.4 1.6E+02 0.0036 26.1 8.9 23 94-116 73-96 (179)
136 TIGR03669 urea_ABC_arch urea A 45.2 26 0.00057 35.1 4.1 55 255-311 42-96 (374)
137 cd05006 SIS_GmhA Phosphoheptos 45.2 1.5E+02 0.0033 26.2 8.6 76 38-116 18-122 (177)
138 PRK09701 D-allose transporter 45.1 1.7E+02 0.0037 28.0 9.6 92 218-317 25-117 (311)
139 cd06296 PBP1_CatR_like Ligand- 45.1 1.4E+02 0.0031 27.0 8.7 85 220-316 2-87 (270)
140 cd01409 SIRT4 SIRT4: Eukaryoti 45.1 40 0.00087 32.6 5.2 58 255-315 181-239 (260)
141 cd01575 PBP1_GntR Ligand-bindi 44.9 1.7E+02 0.0038 26.3 9.2 85 220-316 2-87 (268)
142 cd06330 PBP1_Arsenic_SBP_like 44.9 42 0.00092 32.2 5.4 59 256-316 42-100 (346)
143 cd02958 UAS UAS family; UAS is 44.8 1.3E+02 0.0027 24.7 7.5 64 272-363 43-106 (114)
144 cd06321 PBP1_ABC_sugar_binding 44.3 1.6E+02 0.0034 26.9 8.8 125 220-355 2-131 (271)
145 TIGR01452 PGP_euk phosphoglyco 44.3 2.9E+02 0.0063 26.4 11.0 26 55-84 85-110 (279)
146 cd06305 PBP1_methylthioribose_ 44.1 2.1E+02 0.0045 26.0 9.6 87 220-316 2-89 (273)
147 COG1038 PycA Pyruvate carboxyl 44.1 62 0.0013 36.9 6.8 99 61-181 88-187 (1149)
148 cd06327 PBP1_SBP_like_1 Peripl 44.0 37 0.00081 32.6 4.8 63 256-320 41-104 (334)
149 PRK06683 hypothetical protein; 43.8 35 0.00077 27.5 3.9 42 280-321 26-67 (82)
150 TIGR00274 N-acetylmuramic acid 43.8 49 0.0011 32.7 5.6 35 94-128 124-162 (291)
151 PTZ00409 Sir2 (Silent Informat 43.7 47 0.001 32.5 5.5 58 255-315 176-234 (271)
152 cd01542 PBP1_TreR_like Ligand- 43.6 1.8E+02 0.0039 26.2 9.1 85 220-316 2-87 (259)
153 cd06298 PBP1_CcpA_like Ligand- 43.3 1.9E+02 0.0041 26.2 9.1 85 220-316 2-87 (268)
154 cd06336 PBP1_ABC_ligand_bindin 43.2 37 0.0008 33.0 4.7 59 256-317 46-104 (347)
155 PRK10886 DnaA initiator-associ 43.0 57 0.0012 30.4 5.7 47 269-318 100-147 (196)
156 TIGR00732 dprA DNA protecting 42.7 65 0.0014 30.4 6.1 44 269-316 147-190 (220)
157 PRK10877 protein disulfide iso 42.7 26 0.00056 33.3 3.4 31 121-151 113-143 (232)
158 cd06363 PBP1_Taste_receptor Li 42.4 30 0.00065 34.7 4.0 32 282-313 106-137 (410)
159 TIGR02417 fruct_sucro_rep D-fr 42.4 3.1E+02 0.0066 26.0 11.6 125 218-355 61-188 (327)
160 cd06366 PBP1_GABAb_receptor Li 42.3 48 0.001 32.0 5.3 58 255-314 40-97 (350)
161 cd06313 PBP1_ABC_sugar_binding 42.0 1.9E+02 0.0042 26.7 9.2 87 220-316 2-89 (272)
162 PRK13602 putative ribosomal pr 42.0 41 0.0009 26.9 4.0 45 275-320 21-66 (82)
163 cd01080 NAD_bind_m-THF_DH_Cycl 41.7 43 0.00092 30.4 4.5 75 55-131 44-121 (168)
164 cd01412 SIRT5_Af1_CobB SIRT5_A 41.6 59 0.0013 30.3 5.6 58 255-316 142-200 (224)
165 PRK05562 precorrin-2 dehydroge 41.3 56 0.0012 31.3 5.4 59 281-358 85-147 (223)
166 cd06292 PBP1_LacI_like_10 Liga 41.3 1.8E+02 0.004 26.4 8.8 80 229-316 10-92 (273)
167 PRK02842 light-independent pro 41.2 4.2E+02 0.0091 27.3 12.8 105 24-129 129-243 (427)
168 PRK10838 spr outer membrane li 41.0 57 0.0012 30.5 5.3 72 6-105 67-140 (190)
169 cd08176 LPO Lactadehyde:propan 40.9 89 0.0019 31.5 7.1 78 218-305 29-109 (377)
170 cd06324 PBP1_ABC_sugar_binding 40.9 1.6E+02 0.0034 28.0 8.5 77 230-316 12-91 (305)
171 TIGR02263 benz_CoA_red_C benzo 40.8 80 0.0017 32.1 6.8 117 15-144 187-324 (380)
172 TIGR02638 lactal_redase lactal 40.7 1.1E+02 0.0024 30.9 7.8 79 218-306 30-111 (379)
173 cd06322 PBP1_ABC_sugar_binding 40.6 2.2E+02 0.0048 25.8 9.2 81 227-316 8-89 (267)
174 PRK00414 gmhA phosphoheptose i 40.6 72 0.0016 29.3 5.9 55 261-318 93-149 (192)
175 cd06357 PBP1_AmiC Periplasmic 40.6 37 0.00081 33.4 4.3 54 256-311 42-95 (360)
176 PF13458 Peripla_BP_6: Peripla 40.4 34 0.00073 32.5 3.8 98 255-354 43-144 (343)
177 cd08187 BDH Butanol dehydrogen 40.4 99 0.0022 31.2 7.4 77 218-304 29-109 (382)
178 cd06372 PBP1_GC_G_like Ligand- 40.3 42 0.00092 33.2 4.6 63 256-320 43-106 (391)
179 TIGR02764 spore_ybaN_pdaB poly 40.1 94 0.002 27.8 6.5 45 39-83 79-125 (191)
180 COG1648 CysG Siroheme synthase 40.0 61 0.0013 30.6 5.4 53 292-358 82-134 (210)
181 PF01904 DUF72: Protein of unk 40.0 89 0.0019 29.5 6.6 77 62-151 126-211 (230)
182 PRK15404 leucine ABC transport 39.9 47 0.001 33.0 4.9 62 255-319 67-129 (369)
183 PRK02287 hypothetical protein; 39.7 65 0.0014 29.8 5.3 50 71-126 19-71 (171)
184 PRK04175 rpl7ae 50S ribosomal 39.4 68 0.0015 27.7 5.2 41 280-320 45-86 (122)
185 PF12850 Metallophos_2: Calcin 39.4 1.2E+02 0.0026 25.3 6.7 98 43-160 16-125 (156)
186 cd06270 PBP1_GalS_like Ligand 39.4 2.1E+02 0.0046 26.0 8.9 76 230-316 11-87 (268)
187 COG4822 CbiK Cobalamin biosynt 39.2 1.1E+02 0.0023 29.8 6.8 44 100-151 37-80 (265)
188 PF13986 DUF4224: Domain of un 39.2 28 0.00061 25.3 2.4 26 70-105 20-45 (47)
189 PF04273 DUF442: Putative phos 39.1 2.4E+02 0.0052 23.9 8.5 85 57-154 8-96 (110)
190 cd06347 PBP1_ABC_ligand_bindin 38.9 57 0.0012 30.8 5.2 58 256-315 42-99 (334)
191 TIGR03407 urea_ABC_UrtA urea A 38.8 40 0.00087 33.1 4.2 54 255-310 42-95 (359)
192 COG1570 XseA Exonuclease VII, 38.8 2.3E+02 0.0049 30.1 9.7 73 216-302 134-220 (440)
193 cd06300 PBP1_ABC_sugar_binding 38.7 2.8E+02 0.0061 25.2 9.6 93 219-316 1-94 (272)
194 PRK08673 3-deoxy-7-phosphohept 38.6 4.4E+02 0.0095 26.8 11.7 51 257-315 158-208 (335)
195 COG0205 PfkA 6-phosphofructoki 38.5 61 0.0013 33.1 5.5 43 269-313 82-124 (347)
196 cd00419 Ferrochelatase_C Ferro 38.2 54 0.0012 28.6 4.5 37 96-143 17-53 (135)
197 PRK11303 DNA-binding transcrip 38.2 3.5E+02 0.0077 25.6 11.3 89 218-317 62-151 (328)
198 PF14359 DUF4406: Domain of un 38.0 42 0.00092 27.5 3.5 31 281-311 59-90 (92)
199 cd06359 PBP1_Nba_like Type I p 37.9 52 0.0011 31.7 4.7 57 256-314 40-96 (333)
200 PRK06975 bifunctional uroporph 37.8 1.7E+02 0.0036 32.3 9.1 117 5-126 14-169 (656)
201 cd06578 HemD Uroporphyrinogen- 37.8 1.7E+02 0.0036 26.2 7.8 66 55-125 78-151 (239)
202 COG2861 Uncharacterized protei 37.8 48 0.0011 32.4 4.4 73 70-162 143-223 (250)
203 cd06350 PBP1_GPCR_family_C_lik 37.6 58 0.0013 31.2 5.0 56 256-313 53-121 (348)
204 TIGR01768 GGGP-family geranylg 37.5 1.6E+02 0.0034 28.3 7.8 49 273-321 19-70 (223)
205 PRK09190 hypothetical protein; 37.3 55 0.0012 31.3 4.7 84 228-321 83-173 (220)
206 cd07394 MPP_Vps29 Homo sapiens 37.1 2.4E+02 0.0052 25.4 8.7 94 46-160 21-122 (178)
207 cd06299 PBP1_LacI_like_13 Liga 37.0 2.3E+02 0.0051 25.5 8.7 85 220-316 2-87 (265)
208 PRK12435 ferrochelatase; Provi 37.0 1.2E+02 0.0026 30.2 7.2 82 42-143 124-209 (311)
209 cd06294 PBP1_ycjW_transcriptio 36.9 2.9E+02 0.0062 25.0 9.3 81 269-356 47-133 (270)
210 PF13580 SIS_2: SIS domain; PD 36.9 45 0.00098 28.7 3.8 31 93-123 100-134 (138)
211 PF05159 Capsule_synth: Capsul 36.8 47 0.001 31.5 4.2 33 283-316 1-33 (269)
212 cd01541 PBP1_AraR Ligand-bindi 36.3 2.9E+02 0.0064 25.1 9.4 85 220-316 2-92 (273)
213 TIGR00441 gmhA phosphoheptose 35.9 96 0.0021 27.2 5.8 39 280-318 78-117 (154)
214 TIGR01470 cysG_Nterm siroheme 35.9 3.6E+02 0.0078 25.0 10.2 96 19-128 4-103 (205)
215 cd00738 HGTP_anticodon HGTP an 35.8 68 0.0015 24.6 4.3 41 111-154 23-65 (94)
216 PRK14071 6-phosphofructokinase 35.8 57 0.0012 33.2 4.8 45 268-314 94-138 (360)
217 TIGR01081 mpl UDP-N-acetylmura 35.7 2.9E+02 0.0064 28.3 10.1 60 60-123 27-88 (448)
218 PRK13601 putative L7Ae-like ri 35.7 55 0.0012 26.5 3.8 42 280-321 23-64 (82)
219 cd00363 PFK Phosphofructokinas 35.6 54 0.0012 33.0 4.6 47 267-313 78-127 (338)
220 cd08173 Gro1PDH Sn-glycerol-1- 35.4 1.7E+02 0.0037 29.0 8.0 87 218-317 26-112 (339)
221 PRK00002 aroB 3-dehydroquinate 35.1 1.6E+02 0.0035 29.4 7.9 92 218-316 32-127 (358)
222 cd01917 ACS_2 Acetyl-CoA synth 35.0 61 0.0013 32.3 4.6 39 113-151 113-161 (287)
223 cd06371 PBP1_sensory_GC_DEF_li 34.7 56 0.0012 32.6 4.5 52 256-311 43-94 (382)
224 PLN02564 6-phosphofructokinase 34.7 72 0.0016 34.0 5.5 53 269-321 164-217 (484)
225 cd06352 PBP1_NPR_GC_like Ligan 34.7 56 0.0012 32.1 4.5 63 256-320 43-106 (389)
226 PF13380 CoA_binding_2: CoA bi 34.5 75 0.0016 26.8 4.6 56 58-131 59-114 (116)
227 cd06334 PBP1_ABC_ligand_bindin 34.4 48 0.001 32.7 4.0 57 255-314 41-97 (351)
228 cd06332 PBP1_aromatic_compound 34.3 72 0.0016 30.1 5.0 58 256-316 40-98 (333)
229 COG1832 Predicted CoA-binding 34.2 95 0.0021 27.9 5.3 67 56-123 17-101 (140)
230 PTZ00468 phosphofructokinase f 34.0 66 0.0014 38.2 5.4 53 268-320 183-236 (1328)
231 cd06341 PBP1_ABC_ligand_bindin 33.9 2.4E+02 0.0052 27.0 8.6 58 256-316 42-99 (341)
232 PRK15395 methyl-galactoside AB 33.8 3E+02 0.0066 26.7 9.4 91 218-317 25-116 (330)
233 PRK06559 nicotinate-nucleotide 33.8 1.7E+02 0.0036 29.2 7.5 101 23-130 167-273 (290)
234 TIGR03677 rpl7ae 50S ribosomal 33.7 76 0.0016 27.1 4.6 41 280-320 41-82 (117)
235 PF03575 Peptidase_S51: Peptid 33.7 18 0.0004 31.7 0.8 63 263-356 19-81 (154)
236 TIGR02483 PFK_mixed phosphofru 33.7 76 0.0016 31.9 5.2 44 268-314 81-124 (324)
237 cd02201 FtsZ_type1 FtsZ is a G 33.6 1.1E+02 0.0025 30.0 6.4 44 271-315 75-122 (304)
238 cd06280 PBP1_LacI_like_4 Ligan 33.4 3.4E+02 0.0073 24.6 9.2 85 220-317 2-87 (263)
239 cd02518 GT2_SpsF SpsF is a gly 33.2 1.2E+02 0.0025 27.9 6.1 43 118-160 89-134 (233)
240 TIGR03151 enACPred_II putative 33.0 86 0.0019 31.1 5.5 49 97-150 87-135 (307)
241 PTZ00408 NAD-dependent deacety 32.8 86 0.0019 30.1 5.3 58 255-317 151-209 (242)
242 cd06358 PBP1_NHase Type I peri 32.8 52 0.0011 31.7 3.8 56 255-313 41-96 (333)
243 PRK10329 glutaredoxin-like pro 32.6 2.1E+02 0.0045 22.5 6.6 71 25-116 3-73 (81)
244 cd06284 PBP1_LacI_like_6 Ligan 32.6 3.4E+02 0.0073 24.4 9.0 84 220-316 2-86 (267)
245 PRK15317 alkyl hydroperoxide r 32.6 2.2E+02 0.0048 29.9 8.7 51 25-82 120-170 (517)
246 PRK14619 NAD(P)H-dependent gly 32.5 2.3E+02 0.005 27.6 8.3 138 134-315 17-155 (308)
247 PF00465 Fe-ADH: Iron-containi 32.5 1.3E+02 0.0028 30.0 6.7 78 219-306 23-103 (366)
248 PRK00481 NAD-dependent deacety 32.4 88 0.0019 29.7 5.2 44 271-316 169-213 (242)
249 cd06269 PBP1_glutamate_recepto 32.4 1.1E+02 0.0025 27.6 5.9 60 256-316 42-104 (298)
250 COG4007 Predicted dehydrogenas 32.3 56 0.0012 32.6 3.9 87 37-134 32-126 (340)
251 cd08189 Fe-ADH5 Iron-containin 32.2 2.5E+02 0.0054 28.3 8.7 78 218-305 27-107 (374)
252 TIGR02482 PFKA_ATP 6-phosphofr 32.0 83 0.0018 31.3 5.2 43 268-313 78-121 (301)
253 cd00858 GlyRS_anticodon GlyRS 31.9 72 0.0016 26.8 4.1 42 109-154 45-88 (121)
254 TIGR03006 pepcterm_polyde poly 31.7 1.8E+02 0.0039 28.3 7.3 94 35-129 22-142 (265)
255 TIGR03863 PQQ_ABC_bind ABC tra 31.7 59 0.0013 32.4 4.1 59 257-319 37-96 (347)
256 cd00763 Bacterial_PFK Phosphof 31.7 77 0.0017 31.8 4.9 43 267-313 78-121 (317)
257 cd00296 SIR2 SIR2 superfamily 31.4 1.1E+02 0.0025 27.9 5.7 47 269-317 159-206 (222)
258 cd06277 PBP1_LacI_like_1 Ligan 31.3 3.4E+02 0.0074 24.6 8.9 85 220-316 2-89 (268)
259 PLN02449 ferrochelatase 31.3 3.1E+02 0.0068 29.3 9.5 37 96-142 275-311 (485)
260 cd05014 SIS_Kpsf KpsF-like pro 31.0 93 0.002 25.6 4.6 39 280-318 46-85 (128)
261 PLN02424 ketopantoate hydroxym 30.9 1.7E+02 0.0038 29.7 7.2 99 27-131 98-207 (332)
262 PRK13938 phosphoheptose isomer 30.8 1.1E+02 0.0025 28.3 5.6 56 261-318 95-151 (196)
263 cd06333 PBP1_ABC-type_HAAT_lik 30.8 1.3E+02 0.0028 28.4 6.2 61 256-318 41-101 (312)
264 TIGR02764 spore_ybaN_pdaB poly 30.8 3E+02 0.0066 24.5 8.3 44 107-150 108-158 (191)
265 PRK10624 L-1,2-propanediol oxi 30.7 2.1E+02 0.0046 28.9 7.9 78 218-305 31-111 (382)
266 PF01380 SIS: SIS domain SIS d 30.6 79 0.0017 25.8 4.1 43 95-137 52-98 (131)
267 cd02191 FtsZ FtsZ is a GTPase 30.6 1.3E+02 0.0029 29.7 6.3 44 271-315 75-122 (303)
268 PTZ00286 6-phospho-1-fructokin 30.4 83 0.0018 33.3 5.1 54 268-321 163-217 (459)
269 COG1609 PurR Transcriptional r 30.4 5.4E+02 0.012 25.4 11.3 124 218-355 59-185 (333)
270 smart00852 MoCF_biosynth Proba 30.4 34 0.00073 29.2 1.9 66 284-364 1-78 (135)
271 TIGR03310 matur_ygfJ molybdenu 30.3 1.6E+02 0.0035 25.6 6.3 39 119-157 92-135 (188)
272 cd08182 HEPD Hydroxyethylphosp 30.3 2.5E+02 0.0054 28.1 8.3 76 218-305 24-101 (367)
273 PRK13936 phosphoheptose isomer 30.3 1.2E+02 0.0026 27.8 5.6 38 280-317 110-148 (197)
274 PRK13937 phosphoheptose isomer 30.0 1.3E+02 0.0029 27.2 5.8 38 280-317 105-143 (188)
275 cd06297 PBP1_LacI_like_12 Liga 30.0 4.1E+02 0.009 24.3 9.3 45 269-316 42-87 (269)
276 PF03698 UPF0180: Uncharacteri 29.9 1.3E+02 0.0027 24.5 5.0 20 99-118 58-78 (80)
277 KOG3043 Predicted hydrolase re 29.7 12 0.00026 36.2 -1.1 33 6-46 106-138 (242)
278 cd06283 PBP1_RegR_EndR_KdgR_li 29.6 4.2E+02 0.009 23.8 9.1 42 272-316 46-87 (267)
279 cd08185 Fe-ADH1 Iron-containin 29.6 2.3E+02 0.005 28.5 8.0 78 218-305 26-107 (380)
280 TIGR01279 DPOR_bchN light-inde 29.4 6.3E+02 0.014 25.8 13.4 103 24-129 115-231 (407)
281 TIGR01417 PTS_I_fam phosphoeno 29.4 95 0.0021 33.6 5.4 50 33-83 474-523 (565)
282 cd06360 PBP1_alkylbenzenes_lik 29.4 1.2E+02 0.0025 28.9 5.6 59 256-317 40-99 (336)
283 cd03130 GATase1_CobB Type 1 gl 29.3 3.4E+02 0.0073 24.9 8.4 44 94-150 38-81 (198)
284 TIGR02637 RhaS rhamnose ABC tr 29.3 4.5E+02 0.0097 24.6 9.5 48 268-316 42-90 (302)
285 cd03145 GAT1_cyanophycinase Ty 29.2 75 0.0016 29.7 4.1 74 218-306 30-104 (217)
286 PF00919 UPF0004: Uncharacteri 29.1 3.3E+02 0.0071 22.4 7.9 39 68-115 17-55 (98)
287 cd06289 PBP1_MalI_like Ligand- 29.1 4.2E+02 0.0092 23.7 9.8 86 220-316 2-88 (268)
288 cd05006 SIS_GmhA Phosphoheptos 28.9 1.4E+02 0.0031 26.4 5.8 38 280-317 100-138 (177)
289 PRK11657 dsbG disulfide isomer 28.9 57 0.0012 31.3 3.3 29 122-150 124-153 (251)
290 cd08186 Fe-ADH8 Iron-containin 28.9 2.7E+02 0.0059 28.1 8.4 78 218-305 27-108 (383)
291 PRK06718 precorrin-2 dehydroge 28.8 1.1E+02 0.0024 28.4 5.1 58 281-358 70-131 (202)
292 TIGR02873 spore_ylxY probable 28.5 1.7E+02 0.0037 28.5 6.6 81 58-150 179-263 (268)
293 cd06274 PBP1_FruR Ligand bindi 28.5 4.5E+02 0.0097 23.8 9.2 46 269-317 42-88 (264)
294 cd07948 DRE_TIM_HCS Saccharomy 28.4 5.5E+02 0.012 24.8 13.0 123 8-151 26-161 (262)
295 PF15608 PELOTA_1: PELOTA RNA 28.3 1.1E+02 0.0024 25.9 4.5 38 273-311 47-84 (100)
296 TIGR01357 aroB 3-dehydroquinat 28.3 2.5E+02 0.0054 27.8 7.9 91 218-315 21-115 (344)
297 cd06307 PBP1_uncharacterized_s 27.8 3.2E+02 0.0069 25.0 8.1 87 220-315 2-91 (275)
298 PRK13914 invasion associated s 27.8 1.3E+02 0.0027 32.3 5.8 69 7-104 367-437 (481)
299 COG2454 Uncharacterized conser 27.8 2.9E+02 0.0063 26.4 7.6 66 39-104 112-188 (211)
300 PF00455 DeoRC: DeoR C termina 27.7 61 0.0013 28.9 3.1 63 94-163 17-81 (161)
301 PF10096 DUF2334: Uncharacteri 27.7 1.2E+02 0.0025 29.1 5.2 63 100-163 2-86 (243)
302 cd08175 G1PDH Glycerol-1-phosp 27.6 2.3E+02 0.005 28.1 7.5 35 280-316 79-113 (348)
303 PF01380 SIS: SIS domain SIS d 27.6 99 0.0021 25.2 4.2 55 262-318 35-91 (131)
304 cd06836 PLPDE_III_ODC_DapDC_li 27.4 1.6E+02 0.0034 29.8 6.4 68 66-139 38-113 (379)
305 cd01407 SIR2-fam SIR2 family o 27.4 1.7E+02 0.0037 27.2 6.2 57 255-315 145-202 (218)
306 PRK15461 NADH-dependent gamma- 27.2 4E+02 0.0087 25.8 9.0 93 43-147 14-116 (296)
307 COG3980 spsG Spore coat polysa 27.1 2.3E+02 0.0051 28.6 7.2 101 25-132 1-108 (318)
308 cd01299 Met_dep_hydrolase_A Me 27.1 4E+02 0.0087 25.7 9.0 93 37-131 117-225 (342)
309 COG1737 RpiR Transcriptional r 26.9 3.2E+02 0.0069 26.5 8.2 76 56-132 131-217 (281)
310 cd05710 SIS_1 A subgroup of th 26.7 1.2E+02 0.0026 25.3 4.5 39 280-318 46-85 (120)
311 TIGR02884 spore_pdaA delta-lac 26.7 1.4E+02 0.0031 27.8 5.5 76 4-94 139-223 (224)
312 COG2984 ABC-type uncharacteriz 26.7 7E+02 0.015 25.4 14.2 179 111-311 51-243 (322)
313 PRK06830 diphosphate--fructose 26.6 1E+02 0.0022 32.5 5.0 50 269-320 160-212 (443)
314 PRK09526 lacI lac repressor; R 26.6 4.2E+02 0.0092 25.2 9.0 126 218-355 64-191 (342)
315 PF02310 B12-binding: B12 bind 26.5 1.1E+02 0.0025 24.8 4.4 19 283-301 81-100 (121)
316 COG2008 GLY1 Threonine aldolas 26.5 6E+02 0.013 26.1 10.2 65 218-292 132-201 (342)
317 cd06325 PBP1_ABC_uncharacteriz 26.4 3.8E+02 0.0082 24.4 8.3 88 220-316 2-90 (281)
318 PF01513 NAD_kinase: ATP-NAD k 26.3 62 0.0014 31.4 3.2 31 280-315 75-108 (285)
319 cd06373 PBP1_NPR_like Ligand b 26.2 1E+02 0.0022 30.6 4.7 54 256-311 44-101 (396)
320 TIGR03882 cyclo_dehyd_2 bacter 26.0 2.1E+02 0.0045 26.4 6.4 77 69-163 63-157 (193)
321 PF05049 IIGP: Interferon-indu 25.9 70 0.0015 33.0 3.5 41 280-320 113-154 (376)
322 cd06381 PBP1_iGluR_delta_like 25.9 79 0.0017 31.7 3.9 55 257-314 39-93 (363)
323 cd06368 PBP1_iGluR_non_NMDA_li 25.8 1.2E+02 0.0027 28.6 5.1 49 264-315 46-94 (324)
324 cd08193 HVD 5-hydroxyvalerate 25.8 3.1E+02 0.0068 27.5 8.2 77 218-304 27-106 (376)
325 cd06290 PBP1_LacI_like_9 Ligan 25.7 4.9E+02 0.011 23.5 8.9 84 220-316 2-86 (265)
326 PF04392 ABC_sub_bind: ABC tra 25.6 79 0.0017 30.4 3.7 47 266-313 170-217 (294)
327 PRK10669 putative cation:proto 25.5 92 0.002 33.1 4.5 68 97-172 418-488 (558)
328 TIGR00290 MJ0570_dom MJ0570-re 25.5 1.9E+02 0.004 27.7 6.1 52 102-153 40-94 (223)
329 PRK11337 DNA-binding transcrip 25.4 1.6E+02 0.0034 28.3 5.7 55 263-318 170-225 (292)
330 KOG2947 Carbohydrate kinase [C 25.2 84 0.0018 31.1 3.7 64 216-288 129-192 (308)
331 TIGR02144 LysX_arch Lysine bio 25.2 1.9E+02 0.0042 27.1 6.2 59 66-124 11-77 (280)
332 PRK03202 6-phosphofructokinase 25.2 1.1E+02 0.0023 30.8 4.7 44 267-314 79-123 (320)
333 cd08180 PDD 1,3-propanediol de 25.2 3.6E+02 0.0078 26.6 8.3 88 218-316 23-118 (332)
334 cd06293 PBP1_LacI_like_11 Liga 25.0 5.2E+02 0.011 23.4 10.4 121 220-354 2-125 (269)
335 COG2388 Predicted acetyltransf 25.0 61 0.0013 27.3 2.4 19 111-130 64-82 (99)
336 PRK03803 murD UDP-N-acetylmura 25.0 4.9E+02 0.011 26.6 9.5 94 60-157 33-147 (448)
337 TIGR02955 TMAO_TorT TMAO reduc 24.9 4.8E+02 0.01 24.5 8.9 87 220-315 2-89 (295)
338 TIGR01489 DKMTPPase-SF 2,3-dik 24.8 3.5E+02 0.0076 23.2 7.4 20 135-154 152-172 (188)
339 cd04795 SIS SIS domain. SIS (S 24.6 1.4E+02 0.0031 22.4 4.3 35 280-314 46-81 (87)
340 PF00365 PFK: Phosphofructokin 24.6 55 0.0012 32.1 2.4 43 269-313 80-122 (282)
341 cd06276 PBP1_FucR_like Ligand- 24.5 1.5E+02 0.0033 27.3 5.3 45 270-316 41-85 (247)
342 PF15088 NADH_dh_m_C1: NADH de 24.4 39 0.00084 24.9 1.0 17 339-360 13-29 (49)
343 cd02973 TRX_GRX_like Thioredox 24.4 2.4E+02 0.0053 20.3 5.4 46 25-74 3-48 (67)
344 TIGR01511 ATPase-IB1_Cu copper 24.3 2.7E+02 0.0059 29.8 7.8 44 109-154 433-476 (562)
345 cd06362 PBP1_mGluR Ligand bind 24.2 89 0.0019 31.6 3.9 30 282-311 102-131 (452)
346 cd05008 SIS_GlmS_GlmD_1 SIS (S 23.9 1.5E+02 0.0031 24.3 4.6 38 280-317 45-83 (126)
347 PTZ00365 60S ribosomal protein 23.6 68 0.0015 31.6 2.8 39 283-321 149-189 (266)
348 PTZ00287 6-phosphofructokinase 23.6 1.1E+02 0.0024 36.8 4.8 53 268-320 258-311 (1419)
349 PRK14987 gluconate operon tran 23.5 6.4E+02 0.014 23.9 9.7 85 218-314 64-149 (331)
350 cd08190 HOT Hydroxyacid-oxoaci 23.4 2.6E+02 0.0056 28.8 7.1 79 218-306 24-105 (414)
351 COG2087 CobU Adenosyl cobinami 23.3 1.1E+02 0.0024 28.4 3.9 39 284-322 2-40 (175)
352 PRK06464 phosphoenolpyruvate s 23.3 1.3E+02 0.0029 33.9 5.3 48 35-83 723-771 (795)
353 PF12146 Hydrolase_4: Putative 23.3 47 0.001 26.2 1.4 49 99-166 17-65 (79)
354 KOG2900 Biotin synthase [Coenz 23.2 2.1E+02 0.0046 28.6 6.0 84 31-122 133-230 (380)
355 cd06272 PBP1_hexuronate_repres 23.2 5.5E+02 0.012 23.1 8.7 83 220-317 2-84 (261)
356 COG0104 PurA Adenylosuccinate 23.2 1.2E+02 0.0027 31.8 4.7 50 102-151 129-223 (430)
357 cd00544 CobU Adenosylcobinamid 23.0 1.1E+02 0.0023 27.7 3.8 37 285-321 2-38 (169)
358 PF04914 DltD_C: DltD C-termin 23.0 50 0.0011 29.0 1.6 58 70-158 41-113 (130)
359 cd04908 ACT_Bt0572_1 N-termina 22.8 1.2E+02 0.0026 22.3 3.5 48 69-123 17-65 (66)
360 PRK10537 voltage-gated potassi 22.8 1.6E+02 0.0034 30.4 5.4 74 96-179 240-316 (393)
361 cd01408 SIRT1 SIRT1: Eukaryoti 22.8 1.9E+02 0.0042 27.4 5.7 56 255-314 152-208 (235)
362 PF10087 DUF2325: Uncharacteri 22.7 3.7E+02 0.0081 21.5 6.7 72 68-139 13-95 (97)
363 PRK11557 putative DNA-binding 22.6 4.4E+02 0.0095 24.9 8.1 82 40-123 115-206 (278)
364 PF14258 DUF4350: Domain of un 22.6 3.3E+02 0.0072 20.3 6.1 41 72-115 12-56 (70)
365 TIGR00762 DegV EDD domain prot 22.5 3.5E+02 0.0075 26.0 7.5 43 109-152 44-86 (275)
366 PRK01438 murD UDP-N-acetylmura 22.5 2.9E+02 0.0062 28.5 7.3 88 23-123 15-106 (480)
367 TIGR01769 GGGP geranylgeranylg 22.5 5.4E+02 0.012 24.2 8.5 48 274-321 17-68 (205)
368 COG2871 NqrF Na+-transporting 22.3 60 0.0013 32.9 2.1 24 57-80 376-399 (410)
369 PF01248 Ribosomal_L7Ae: Ribos 22.3 82 0.0018 25.1 2.6 41 280-320 30-71 (95)
370 TIGR01470 cysG_Nterm siroheme 22.3 2.1E+02 0.0045 26.6 5.7 59 281-358 69-131 (205)
371 cd08177 MAR Maleylacetate redu 22.2 2.3E+02 0.0051 28.0 6.4 36 280-317 76-111 (337)
372 PF03358 FMN_red: NADPH-depend 22.2 1.1E+02 0.0023 26.1 3.5 23 284-306 3-26 (152)
373 cd05017 SIS_PGI_PMI_1 The memb 22.1 1.4E+02 0.0031 24.7 4.2 41 280-320 42-83 (119)
374 PRK05333 NAD-dependent deacety 22.0 1.9E+02 0.0041 28.3 5.6 58 255-315 191-249 (285)
375 cd06317 PBP1_ABC_sugar_binding 22.0 5.9E+02 0.013 23.0 10.1 87 220-316 2-90 (275)
376 TIGR02194 GlrX_NrdH Glutaredox 22.0 2.7E+02 0.0058 20.8 5.3 71 25-115 1-71 (72)
377 PRK10423 transcriptional repre 21.7 6.3E+02 0.014 23.8 9.0 88 218-316 57-145 (327)
378 PLN02621 nicotinamidase 21.7 6.1E+02 0.013 23.0 9.1 119 26-152 23-160 (197)
379 PRK10703 DNA-binding transcrip 21.7 7E+02 0.015 23.7 9.7 87 218-316 60-148 (341)
380 PF09152 DUF1937: Domain of un 21.6 87 0.0019 27.2 2.8 36 277-313 76-114 (116)
381 KOG2244 Highly conserved prote 21.6 93 0.002 34.0 3.5 42 280-321 698-744 (786)
382 COG4770 Acetyl/propionyl-CoA c 21.3 1.2E+02 0.0027 33.2 4.3 154 5-181 13-181 (645)
383 TIGR00824 EIIA-man PTS system, 21.2 74 0.0016 26.9 2.2 33 25-62 2-34 (116)
384 cd05005 SIS_PHI Hexulose-6-pho 21.2 1.6E+02 0.0035 26.1 4.6 39 280-318 74-113 (179)
385 PF08485 Polysacc_syn_2C: Poly 21.2 29 0.00063 25.6 -0.2 12 288-299 21-32 (48)
386 cd01465 vWA_subgroup VWA subgr 21.2 1.2E+02 0.0027 25.8 3.7 30 292-321 139-168 (170)
387 COG2515 Acd 1-aminocyclopropan 21.0 2.4E+02 0.0052 28.6 6.1 40 277-317 60-100 (323)
388 COG0773 MurC UDP-N-acetylmuram 20.9 4.4E+02 0.0096 28.1 8.3 91 61-164 36-127 (459)
389 PRK09330 cell division protein 20.9 2.3E+02 0.005 29.3 6.1 43 272-315 89-135 (384)
390 COG0826 Collagenase and relate 20.9 2.9E+02 0.0062 28.2 6.7 79 227-321 45-126 (347)
391 cd06351 PBP1_iGluR_N_LIVBP_lik 20.8 1.7E+02 0.0038 27.3 4.9 38 281-318 61-98 (328)
392 cd01544 PBP1_GalR Ligand-bindi 20.8 5.4E+02 0.012 23.5 8.2 70 277-354 49-121 (270)
393 COG2242 CobL Precorrin-6B meth 20.6 88 0.0019 29.3 2.8 122 7-151 24-160 (187)
394 PRK10936 TMAO reductase system 20.5 6.6E+02 0.014 24.4 9.1 87 218-315 47-136 (343)
395 TIGR00147 lipid kinase, YegS/R 20.5 2.8E+02 0.0061 26.5 6.4 17 280-296 56-72 (293)
396 TIGR01418 PEP_synth phosphoeno 20.5 1.7E+02 0.0037 32.9 5.5 48 35-83 716-764 (782)
397 cd01994 Alpha_ANH_like_IV This 20.4 2.9E+02 0.0062 25.5 6.2 50 104-153 42-97 (194)
398 cd06384 PBP1_NPR_B Ligand-bind 20.4 1.7E+02 0.0036 29.2 5.0 54 256-312 44-102 (399)
399 cd05013 SIS_RpiR RpiR-like pro 20.3 2E+02 0.0044 23.2 4.7 40 280-319 59-99 (139)
400 COG0683 LivK ABC-type branched 20.1 1E+02 0.0022 30.6 3.4 58 255-314 52-109 (366)
401 PRK05742 nicotinate-nucleotide 20.1 1.9E+02 0.0042 28.4 5.2 100 24-129 161-264 (277)
No 1
>PLN02821 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase
Probab=100.00 E-value=2.3e-116 Score=884.17 Aligned_cols=364 Identities=84% Similarity=1.311 Sum_probs=350.3
Q ss_pred CCccc-cchHHHHHHHcCCcccccceEEEEeCCCCCcccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHHcCc
Q 017886 1 MNQEY-TSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAV 79 (364)
Q Consensus 1 ~~~~y-~~~~~~~~~~~~~~~~~~~mkI~lA~~~GFC~GV~RAi~~a~~~~~~~~~~~vy~lG~iIHN~~Vv~~L~~~Gv 79 (364)
|.++| +|+||+.||++|+.+.||+|+|+||+++||||||+|||++|+++++.+++++||+||||||||+|+++|+++||
T Consensus 81 ~~~~y~~s~li~~~r~~~~~~~~g~m~I~LA~~~GFC~GVeRAV~~A~ea~~~~p~~~Iy~lgeIIHNp~Vv~~L~~~GV 160 (460)
T PLN02821 81 MGVEYSTSDLVKTLKENGNVYTWGDVTVKLAKAYGFCWGVERAVQIAYEARKQFPDEKLWITNEIIHNPTVNKRLEEMNV 160 (460)
T ss_pred hhhhhhccHHHHHHHhCCCeEEecceEEEEeCCCCCCccHHHHHHHHHHHHhhCCCCCeEEecCCccCHHHHHHHHHCCC
Confidence 56789 99999999999999999999999999999999999999999999887777899999999999999999999999
Q ss_pred EEecCCccccccccccCCCEEEEcCCCCCHHHHHHHHhcCCcEEeccCchhHHHHHHHHHHhhCCCeEEEEecCCCceee
Q 017886 80 QNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETV 159 (364)
Q Consensus 80 ~~v~~~~~~~~~~~l~~g~~VIIrAHGv~~~v~~~l~~~g~~iiDaTCP~V~kv~~~v~~~~~~Gy~iIIiG~~~HpEv~ 159 (364)
.+|++.++..+++++++|++|||||||+||++++.|+++|++|||||||||+|+|+.|+++.++||++||+|+++||||+
T Consensus 161 ~~I~~~~~~~~~~~v~~gdvVIirAHGvs~~~~~~l~~kg~~IVDaTCP~V~KV~~~v~k~~k~gy~iII~Gk~~HpEv~ 240 (460)
T PLN02821 161 QFIEVEEGGKDFSVVGEGDVVILPAFGASVEEMQTLNDKNVQIVDTTCPWVSKVWNTVEKHKKKDYTSVIHGKYAHEETV 240 (460)
T ss_pred EEecccccccccccCCCCCEEEEeCCCCCHHHHHHHHHCCCeEEecCCcchHHHHHHHHHHHhCCCEEEEECCCCCccee
Confidence 99997666667899998999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecccCCcEEEEcChhhHHHhhhhhcCCCCCCCCChHHHHHHHHHhhhcCCCCCCCCCceEEEEEcCCCChHHHHHHHHH
Q 017886 160 ATASFAGKYIIVKNMKEAEYVCDYILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKL 239 (364)
Q Consensus 160 gi~g~~~~~~vv~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kv~vvsQTT~~~~~~~~i~~~ 239 (364)
|+.||+++++||++++|++++++||.++.|||++.+++.|+++|+++.+++|||+.+++|+++++||||+.++|++|++.
T Consensus 241 gt~s~a~~~~VV~~~~ea~~v~~yi~~~~~~~~~~~~~~f~~~f~~a~s~~fdpd~~l~kvgvvnQTTm~~~et~~I~~~ 320 (460)
T PLN02821 241 ATASFAGKYIIVKNMKEATYVCDYILGGQLDGSSGTKEEFLEKFKNAVSKGFDPDTDLVKVGIANQTTMLKGETEEIGKL 320 (460)
T ss_pred ecccccCCeEEECCHHHHHHHhhhcccccccccccchhhhhhhhcccccccCCcccccccEEEEECCCCcHHHHHHHHHH
Confidence 99999988999999999999999999999999999999999999999999999877778999999999999999999999
Q ss_pred HHHHHhhhcccccccccccccccccHHHHHHHHHHHHhhhhCCCEEEEEcCCCCchhHHHHHHHHhhCCCeEEeCCCCcc
Q 017886 240 VEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRI 319 (364)
Q Consensus 240 l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ~a~~eLa~~~vD~miVVGGknSSNT~rL~eia~~~~~~t~~Ie~~~eL 319 (364)
|+++|+++++|++.+.|+.+|||||+||++||+|+++|+.+++|+||||||+|||||+||+|||++.|+|+||||+++||
T Consensus 321 l~~~~~~k~gp~~~~~~~~vfnTIC~ATqeRQdA~~~L~~~~vDlmiVVGG~NSSNT~~L~eIa~~~g~~sy~Ie~~~eI 400 (460)
T PLN02821 321 LEKTMMQKYGVENVNDHFMSFNTICDATQERQDAMYKLVEEKLDLMLVVGGWNSSNTSHLQEIAEHKGIPSYWIDSEERI 400 (460)
T ss_pred HHHhhhhhcCCcccCccccccCCcchhHHHHHHHHHHHhhcCCCEEEEECCCCCccHHHHHHHHHHhCCCEEEECCHHHc
Confidence 99999999999888899999999999999999999999636899999999999999999999999999999999999999
Q ss_pred CCCCcchhhhccchhhhhcccCCCCCCEEEEEeCCCCCHHHHhcC
Q 017886 320 GPGNKIAYKLMHGELVEKENWLPKGQITIGITSGASTPDKVISSA 364 (364)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~wl~~~~~~VGITAGASTP~~lI~e~ 364 (364)
++.+.|.|++.||++.++++||+.++.+||||||||||||+|++|
T Consensus 401 ~~~~~i~h~~~~~e~~~~~~wl~~~~~~VGITAGASTPd~lIeeV 445 (460)
T PLN02821 401 GPGNTIAHKLNHGELVEKENWLPEGPVTIGVTSGASTPDKVVEDV 445 (460)
T ss_pred CcccccccccccchhhhhHHHhccCCCEEEEecCCCCCHHHHHHH
Confidence 999999999999999999999977789999999999999999986
No 2
>PRK13371 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=100.00 E-value=5.9e-111 Score=834.73 Aligned_cols=358 Identities=66% Similarity=1.110 Sum_probs=331.2
Q ss_pred CCccccchHHHHHHHcCCcccccceEEEEeCCCCCcccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHHcCcE
Q 017886 1 MNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQ 80 (364)
Q Consensus 1 ~~~~y~~~~~~~~~~~~~~~~~~~mkI~lA~~~GFC~GV~RAi~~a~~~~~~~~~~~vy~lG~iIHN~~Vv~~L~~~Gv~ 80 (364)
+..+|+|+||++||++|+.+.+|+|+|++|+++||||||+|||++|+++++.+++++||+||||||||+|+++|+++||.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~m~I~lA~~~GFC~GV~RAI~~a~~~~~~~~~~~vytlG~IIHNp~Vv~~L~~~Gv~ 93 (387)
T PRK13371 14 LETAYQSSLIQSIRENGYVLQFGDVTIKLARAFGFCWGVERAVAMAYETRRHFPDERIWITNEIIHNPSVNQHLREMGVR 93 (387)
T ss_pred HHHHHhHHHHHHHHhCCCeeeeCCeEEEEeCCCCCCccHHHHHHHHHHHHhhcCCCCeEEecCCcCCHHHHHHHHhCCCE
Confidence 35789999999999999999999999999999999999999999999988766567999999999999999999999999
Q ss_pred EecCCccccccccccCCCEEEEcCCCCCHHHHHHHHhcCCcEEeccCchhHHHHHHHHHHhhCCCeEEEEecCCCceeee
Q 017886 81 NIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVA 160 (364)
Q Consensus 81 ~v~~~~~~~~~~~l~~g~~VIIrAHGv~~~v~~~l~~~g~~iiDaTCP~V~kv~~~v~~~~~~Gy~iIIiG~~~HpEv~g 160 (364)
++++.++.++++++++|++|||||||+||+++++|+++|++|||||||+|+|+|++|++++++||+|||+|+++||||+|
T Consensus 94 ~v~~~~~~~~~~~v~~~~~VIIrAHGv~~~v~~~~~~rgl~iiDATCP~V~kvh~~v~~~~~~Gy~iIIiG~~~HpEV~G 173 (387)
T PRK13371 94 FIPVEKGVKDFSVVTPGDVVILPAFGATVQEMQLLNEKGCHIVDTTCPWVSKVWNTVEKHKKKDFTSIIHGKYKHEETRA 173 (387)
T ss_pred EEcCcCcccchhcCCCCCEEEEeCCCCCHHHHHHHHHCCCeEEecCCccchHHHHHHHHHHhCCCEEEEEcCCCCcceee
Confidence 99864444568899889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecccCCcEEEEcChhhHHHhhhhhcCCCCCCCCChHHHHHHHHHhhhcCCCCCCCCCceEEEEEcCCCChHHHHHHHHHH
Q 017886 161 TASFAGKYIIVKNMKEAEYVCDYILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLV 240 (364)
Q Consensus 161 i~g~~~~~~vv~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kv~vvsQTT~~~~~~~~i~~~l 240 (364)
+.||++.++||++++|++++++++..+ .+...|+++|..+.+.+++|.+..+|+++++||||+.++|++|++.|
T Consensus 174 i~g~a~~~~VV~~~~e~~~l~~~~~~~------~~~~~~~~~f~~~~s~~~~~~~~~~kv~vvsQTT~~~~~~~~iv~~l 247 (387)
T PRK13371 174 TSSFAGTYLVVLDLEEAQYVADYILGG------GDREEFLERFAKAYSPGFDPDRDLERVGVANQTTMLKSETEEIGKLF 247 (387)
T ss_pred eccccCceEEECCHHHHHHHhhhhccc------cchhhhhhhhhhcccccCCccCCCccEEEEECCCCcHHHHHHHHHHH
Confidence 999997789999999999998877665 35577899999999999887656689999999999999999999999
Q ss_pred HHHHhhhcccccccccccccccccHHHHHHHHHHHHhhhhCCCEEEEEcCCCCchhHHHHHHHHhhCCCeEEeCCCCccC
Q 017886 241 EKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIG 320 (364)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ~a~~eLa~~~vD~miVVGGknSSNT~rL~eia~~~~~~t~~Ie~~~eL~ 320 (364)
+++|+.++++.+.+.+++++||||+||++||+|+++||.+++|+||||||+|||||+||++||++.|+++||||+++||+
T Consensus 248 ~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ~A~~~La~~~vD~miVVGG~nSSNT~rL~eia~~~g~~ty~Ie~~~eL~ 327 (387)
T PRK13371 248 ERTMLRKYGPANLNEHFLSFNTICDATQERQDAMFSLVEEPLDLMVVIGGYNSSNTTHLQEIAIERGIPSYHIDSPERIL 327 (387)
T ss_pred HHhhhhhcCCccccccccccCCcchhHHHHHHHHHHHhhcCCCEEEEECCCCCccHHHHHHHHHhcCCCEEEECCHHHcC
Confidence 99999998876667799999999999999999999998347999999999999999999999999999999999999999
Q ss_pred CCCcchhhhccchhhhhcccCCCCCCEEEEEeCCCCCHHHHhcC
Q 017886 321 PGNKIAYKLMHGELVEKENWLPKGQITIGITSGASTPDKVISSA 364 (364)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~wl~~~~~~VGITAGASTP~~lI~e~ 364 (364)
+++.|.|+....+..++++||+++..+||||||||||+|+|++|
T Consensus 328 ~~~~i~h~~~~~~~~~t~~wl~~~~~~VGITAGASTP~~lI~eV 371 (387)
T PRK13371 328 SGNSIEHKPLGKELVVTENWLPEGPVTVGITSGASTPDKVVEDV 371 (387)
T ss_pred CccccccccccchhhhhhhhhccCCCEEEEecCCCCCHHHHHHH
Confidence 98889999665666788999955688999999999999999986
No 3
>PRK12360 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=100.00 E-value=5.5e-100 Score=733.13 Aligned_cols=273 Identities=33% Similarity=0.557 Sum_probs=254.3
Q ss_pred eEEEEeCCCCCcccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHHcCcEEecCCccccccccccCCCEEEEcC
Q 017886 25 VKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPA 104 (364)
Q Consensus 25 mkI~lA~~~GFC~GV~RAi~~a~~~~~~~~~~~vy~lG~iIHN~~Vv~~L~~~Gv~~v~~~~~~~~~~~l~~g~~VIIrA 104 (364)
|+|++|+++||||||+|||++|+++++.+++++||+||||||||+|+++|+++||.++++ ++++++++|++|||||
T Consensus 1 M~I~lA~~~GFC~GV~rAi~~a~~~~~~~~~~~vy~lG~iVHN~~Vv~~L~~~Gv~~v~~----~~~~~v~~~~~ViirA 76 (281)
T PRK12360 1 MKILIAKNAGFCFGVKRAIDTAYDEIEKNDGKKIYTLGPLIHNNQVVSDLEEKGVKTIEE----SEIDSLKEGDVVIIRS 76 (281)
T ss_pred CEEEEeCCCCCCccHHHHHHHHHHHHHhcCCCCeEEecCCcCCHHHHHHHHHCcCEEECc----CchhhCCCCCEEEEeC
Confidence 899999999999999999999999876654578999999999999999999999999932 1478888899999999
Q ss_pred CCCCHHHHHHHHhcCCcEEeccCchhHHHHHHHHHHhhCCCeEEEEecCCCceeeeecccCC-cEEEEcChhhHHHhhhh
Q 017886 105 FGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAG-KYIIVKNMKEAEYVCDY 183 (364)
Q Consensus 105 HGv~~~v~~~l~~~g~~iiDaTCP~V~kv~~~v~~~~~~Gy~iIIiG~~~HpEv~gi~g~~~-~~~vv~~~~e~~~~~~~ 183 (364)
||+||+++++|+++|+.|||||||||+|+|++|++++++||+|||+|+++||||+|+.||++ .++||++++|++.+.
T Consensus 77 HGv~~~~~~~~~~~g~~viDaTCP~V~k~~~~v~~~~~~Gy~iviiG~~~HpEv~gi~g~~~~~~~vv~~~~d~~~l~-- 154 (281)
T PRK12360 77 HGVSKKVYKDLKDKGLEIIDATCPFVKKIQNIVEEYYNKGYSIIIVGDKNHPEVIGINGWCDNSAYIVNSIEEVENIP-- 154 (281)
T ss_pred CCCCHHHHHHHHHCCCeEEeCCCccchHHHHHHHHHHhCCCEEEEEcCCCCceeeEeccCcCCCeEEECCHHHHhhCc--
Confidence 99999999999999999999999999999999999999999999999999999999999997 578999999987641
Q ss_pred hcCCCCCCCCChHHHHHHHHHhhhcCCCCCCCCCceEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccccc
Q 017886 184 ILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTI 263 (364)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~v~nTI 263 (364)
..+++++++||||+.++|++|++.|+++ .++++++|||
T Consensus 155 --------------------------------~~~kv~~vsQTT~~~~~~~~iv~~l~~~----------~~~~~v~~TI 192 (281)
T PRK12360 155 --------------------------------FLDKACVVAQTTIIPELWEDILNVIKLK----------SKELVFFNTI 192 (281)
T ss_pred --------------------------------cccCEEEEECCCCcHHHHHHHHHHHHHh----------CcccccCCCc
Confidence 1268999999999999999999999873 2457889999
Q ss_pred cHHHHHHHHHHHHhhhhCCCEEEEEcCCCCchhHHHHHHHHhhCCCeEEeCCCCccCCCCcchhhhccchhhhhcccCCC
Q 017886 264 CDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPK 343 (364)
Q Consensus 264 C~AT~~RQ~a~~eLa~~~vD~miVVGGknSSNT~rL~eia~~~~~~t~~Ie~~~eL~~~~~~~~~~~~~~~~~~~~wl~~ 343 (364)
|+||++||+|+++|| +++|+||||||+|||||+||++||++.|+++||||+++||++ +|| .
T Consensus 193 C~aT~~RQ~a~~~La-~~vD~miVVGg~~SsNT~rL~eia~~~~~~t~~Ie~~~el~~-----------------~~~-~ 253 (281)
T PRK12360 193 CSATKKRQESAKELS-KEVDVMIVIGGKHSSNTQKLVKICEKNCPNTFHIETADELDL-----------------EML-K 253 (281)
T ss_pred chhhhhHHHHHHHHH-HhCCEEEEecCCCCccHHHHHHHHHHHCCCEEEECChHHCCH-----------------HHh-C
Confidence 999999999999999 789999999999999999999999999999999999999999 999 6
Q ss_pred CCCEEEEEeCCCCCHHHHhcC
Q 017886 344 GQITIGITSGASTPDKVISSA 364 (364)
Q Consensus 344 ~~~~VGITAGASTP~~lI~e~ 364 (364)
++.+||||||||||+|+|++|
T Consensus 254 ~~~~VGitaGASTP~~li~eV 274 (281)
T PRK12360 254 DYKIIGITAGASTPDWIIEEV 274 (281)
T ss_pred CCCEEEEEccCCCCHHHHHHH
Confidence 899999999999999999985
No 4
>TIGR00216 ispH_lytB (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming). Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response.
Probab=100.00 E-value=1.7e-99 Score=729.33 Aligned_cols=271 Identities=40% Similarity=0.635 Sum_probs=251.3
Q ss_pred EEEEeCCCCCcccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHHcCc-EEecCCccccccccccCCCEEEEcC
Q 017886 26 KVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAV-QNIPVEEGKKQFDVVNKGDVVVLPA 104 (364)
Q Consensus 26 kI~lA~~~GFC~GV~RAi~~a~~~~~~~~~~~vy~lG~iIHN~~Vv~~L~~~Gv-~~v~~~~~~~~~~~l~~g~~VIIrA 104 (364)
+|++|+++||||||+|||++|++++++. +++||+||||||||||+++|+++|| .+++ +++++++|++|||||
T Consensus 1 ~I~lA~~~GFC~GV~rAi~~a~~~~~~~-~~~iy~lG~iIHN~~Vv~~L~~~Gv~~~v~------~~~~v~~~~~ViirA 73 (280)
T TIGR00216 1 DIILAKPRGFCFGVKRAIQMAEEALKES-GKPVYTLGPIVHNPQVVERLRERGVFFFLE------DLDEVAAGDTVIIRA 73 (280)
T ss_pred CEEEccCCCCCccHHHHHHHHHHHHhhc-CCCeEEecCCccCHHHHHHHHHCCCEEeec------CcccCCCCCEEEEeC
Confidence 5899999999999999999999988653 5789999999999999999999997 7776 468888899999999
Q ss_pred CCCCHHHHHHHHhcCCcEEeccCchhHHHHHHHHHHhhCCCeEEEEecCCCceeeeecccCC-cEEEEcChhhHHHhhhh
Q 017886 105 FGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAG-KYIIVKNMKEAEYVCDY 183 (364)
Q Consensus 105 HGv~~~v~~~l~~~g~~iiDaTCP~V~kv~~~v~~~~~~Gy~iIIiG~~~HpEv~gi~g~~~-~~~vv~~~~e~~~~~~~ 183 (364)
||+||+++++|+++|+.|||||||||+|+|++|++++++||+|||+|+++||||+|+.||++ .++||++++|++.+.
T Consensus 74 HGv~~~~~~~~~~~gl~viDaTCP~V~kv~~~v~~~~~~Gy~iiiiG~~~HpEv~gi~g~~~~~~~vv~~~~d~~~l~-- 151 (280)
T TIGR00216 74 HGVPPEVREELEKKGLEVIDATCPLVTKVHNAVKKYAKEGYHVILIGKKNHPEVIGTRGYAPDKAIVVETLEDLENFK-- 151 (280)
T ss_pred CCCCHHHHHHHHHCCCeEEeCCCcccHHHHHHHHHHHhCCCEEEEEeCCCCCeeeeeccCcCCCEEEECCHHHHHhCC--
Confidence 99999999999999999999999999999999999999999999999999999999999997 578999999987641
Q ss_pred hcCCCCCCCCChHHHHHHHHHhhhcCCCCCCCCCceEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccccc
Q 017886 184 ILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTI 263 (364)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~v~nTI 263 (364)
..+++++++||||+.++|++|+++|+++||. .++.++|||
T Consensus 152 --------------------------------~~~~v~vvsQTT~~~~~~~~i~~~l~~~~~~--------~~~~~~nTI 191 (280)
T TIGR00216 152 --------------------------------VEDLLGVVSQTTLSQEDTKEIVAELKARVPQ--------KEVPVFNTI 191 (280)
T ss_pred --------------------------------CCCcEEEEEcCCCcHHHHHHHHHHHHHhCCC--------cCCCCCCCc
Confidence 1258999999999999999999999885432 346789999
Q ss_pred cHHHHHHHHHHHHhhhhCCCEEEEEcCCCCchhHHHHHHHHhhCCCeEEeCCCCccCCCCcchhhhccchhhhhcccCCC
Q 017886 264 CDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPK 343 (364)
Q Consensus 264 C~AT~~RQ~a~~eLa~~~vD~miVVGGknSSNT~rL~eia~~~~~~t~~Ie~~~eL~~~~~~~~~~~~~~~~~~~~wl~~ 343 (364)
|+||++||+|+++|| +++|+||||||+|||||+||++||++.|+++||||+++||++ +|| .
T Consensus 192 C~AT~~RQ~a~~~la-~~vD~miVVGg~nSsNT~rL~ei~~~~~~~t~~Ie~~~el~~-----------------~~l-~ 252 (280)
T TIGR00216 192 CYATQNRQDAVKELA-PEVDLMIVIGGKNSSNTTRLYEIAEEHGPPSYLIETAEELPE-----------------EWL-K 252 (280)
T ss_pred ccccHHHHHHHHHHH-hhCCEEEEECCCCCchHHHHHHHHHHhCCCEEEECChHHCCH-----------------HHh-C
Confidence 999999999999999 789999999999999999999999999999999999999999 999 6
Q ss_pred CCCEEEEEeCCCCCHHHHhcC
Q 017886 344 GQITIGITSGASTPDKVISSA 364 (364)
Q Consensus 344 ~~~~VGITAGASTP~~lI~e~ 364 (364)
++.+||||||||||+|+|++|
T Consensus 253 ~~~~VGiTAGASTP~~li~eV 273 (280)
T TIGR00216 253 GVKVVGITAGASTPDWIIEEV 273 (280)
T ss_pred CCCEEEEEecCCCCHHHHHHH
Confidence 899999999999999999986
No 5
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed
Probab=100.00 E-value=4e-99 Score=732.26 Aligned_cols=272 Identities=33% Similarity=0.558 Sum_probs=252.9
Q ss_pred eEEEEeCCCCCcccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHHcCcEEecCCccccccccccCCCEEEEcC
Q 017886 25 VKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPA 104 (364)
Q Consensus 25 mkI~lA~~~GFC~GV~RAi~~a~~~~~~~~~~~vy~lG~iIHN~~Vv~~L~~~Gv~~v~~~~~~~~~~~l~~g~~VIIrA 104 (364)
|+|++|+++||||||+|||++|+++++++ +++|||||||||||||+++|+++||.++++ ++++++|++|||||
T Consensus 1 MkI~lA~~~GFC~GV~rAi~~a~~~~~~~-~~~iytlG~iIHN~~vv~~L~~~GV~~v~~------~~~v~~~~~ViirA 73 (298)
T PRK01045 1 MKILLANPRGFCAGVDRAIEIVERALEKY-GAPIYVRHEIVHNRYVVERLEKKGAIFVEE------LDEVPDGAIVIFSA 73 (298)
T ss_pred CEEEEeCCCCCCccHHHHHHHHHHHHHhc-CCCeEEEecCccCHHHHHHHHHCCCEEecC------cccCCCCCEEEEeC
Confidence 89999999999999999999999987654 478999999999999999999999999984 67888899999999
Q ss_pred CCCCHHHHHHHHhcCCcEEeccCchhHHHHHHHHHHhhCCCeEEEEecCCCceeeeecccCC-cEEEEcChhhHHHhhhh
Q 017886 105 FGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAG-KYIIVKNMKEAEYVCDY 183 (364)
Q Consensus 105 HGv~~~v~~~l~~~g~~iiDaTCP~V~kv~~~v~~~~~~Gy~iIIiG~~~HpEv~gi~g~~~-~~~vv~~~~e~~~~~~~ 183 (364)
||+||+++++|+++|+.|||||||||+|+|++|++++++||+|||+|+++||||+|+.||++ .++||++++|++.+.
T Consensus 74 HGv~~~~~~~~~~~g~~viDaTCP~V~k~~~~v~~~~~~Gy~vvi~G~~~HpEv~gi~g~~~~~~~vv~~~~e~~~l~-- 151 (298)
T PRK01045 74 HGVSPAVREEAKERGLTVIDATCPLVTKVHKEVARMSREGYEIILIGHKGHPEVEGTMGQAPGGVYLVESPEDVAKLE-- 151 (298)
T ss_pred CCCCHHHHHHHHHCCCeEEeCCCccchHHHHHHHHHHhCCCEEEEEeCCCCCeeeeeccCcCCCEEEEcCHHHHhhcc--
Confidence 99999999999999999999999999999999999999999999999999999999999997 578999999987651
Q ss_pred hcCCCCCCCCChHHHHHHHHHhhhcCCCCCCCCCceEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccc--cc
Q 017886 184 ILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFIS--FN 261 (364)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~v--~n 261 (364)
+ ...++++++|||||+.++|++|+++|+++ + +++++ +|
T Consensus 152 -----------------------------~-~~~~~v~vvsQTT~~~~~~~~i~~~l~~~----~------~~~~v~~~n 191 (298)
T PRK01045 152 -----------------------------V-KDPDKLALVTQTTLSVDDTAEIIAALKER----F------PEIQGPPKD 191 (298)
T ss_pred -----------------------------c-CCCCcEEEEEcCCCcHHHHHHHHHHHHHh----C------cCcccCCCC
Confidence 0 12368999999999999999999999873 2 34556 99
Q ss_pred cccHHHHHHHHHHHHhhhhCCCEEEEEcCCCCchhHHHHHHHHhhCCCeEEeCCCCccCCCCcchhhhccchhhhhcccC
Q 017886 262 TICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWL 341 (364)
Q Consensus 262 TIC~AT~~RQ~a~~eLa~~~vD~miVVGGknSSNT~rL~eia~~~~~~t~~Ie~~~eL~~~~~~~~~~~~~~~~~~~~wl 341 (364)
|||+||++||+|+++|| +++|+||||||+|||||+||++||++.|+++||||+++||++ +||
T Consensus 192 TIC~aT~~RQ~a~~~La-~~vD~miVVGg~~SsNT~kL~~i~~~~~~~t~~Ie~~~el~~-----------------~~l 253 (298)
T PRK01045 192 DICYATQNRQEAVKELA-PQADLVIVVGSKNSSNSNRLREVAEEAGAPAYLIDDASEIDP-----------------EWF 253 (298)
T ss_pred CcchhhHHHHHHHHHHH-hhCCEEEEECCCCCccHHHHHHHHHHHCCCEEEECChHHCcH-----------------HHh
Confidence 99999999999999999 799999999999999999999999999999999999999999 999
Q ss_pred CCCCCEEEEEeCCCCCHHHHhcC
Q 017886 342 PKGQITIGITSGASTPDKVISSA 364 (364)
Q Consensus 342 ~~~~~~VGITAGASTP~~lI~e~ 364 (364)
.++.+||||||||||+|+|++|
T Consensus 254 -~~~~~VGitaGASTP~~li~eV 275 (298)
T PRK01045 254 -KGVKTVGVTAGASAPEWLVQEV 275 (298)
T ss_pred -cCCCEEEEEecCCCCHHHHHHH
Confidence 7999999999999999999985
No 6
>COG0761 lytB 4-Hydroxy-3-methylbut-2-enyl diphosphate reductase IspH [Lipid metabolism]
Probab=100.00 E-value=5.7e-98 Score=712.90 Aligned_cols=275 Identities=35% Similarity=0.583 Sum_probs=256.0
Q ss_pred ceEEEEeCCCCCcccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHHcCcEEecCCccccccccccCCCEEEEc
Q 017886 24 NVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLP 103 (364)
Q Consensus 24 ~mkI~lA~~~GFC~GV~RAi~~a~~~~~~~~~~~vy~lG~iIHN~~Vv~~L~~~Gv~~v~~~~~~~~~~~l~~g~~VIIr 103 (364)
.|+|+||+|+||||||+|||++|++++++++ +|||++||||||++|+++|+++|+.|++ +++++|+|++||||
T Consensus 1 ~~~I~lA~prGFCaGV~RAI~ive~al~~~g-~pIyv~~eIVHN~~Vv~~L~~~g~~fve------~l~e~p~~~~VIfs 73 (294)
T COG0761 1 MMKILLAKPRGFCAGVDRAIQIVERALEEYG-APIYVRHEIVHNRYVVDRLREKGAIFVE------ELDEVPDGATVIFS 73 (294)
T ss_pred CceEEEecCCccchhHHHHHHHHHHHHHHcC-CCeEEEeccccCHHHHHHHHHcCCEecc------ccccCCCCCEEEEE
Confidence 4899999999999999999999999999984 7899999999999999999999999997 46889999999999
Q ss_pred CCCCCHHHHHHHHhcCCcEEeccCchhHHHHHHHHHHhhCCCeEEEEecCCCceeeeecc-cCC-cEEEEcChhhHHHhh
Q 017886 104 AFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATAS-FAG-KYIIVKNMKEAEYVC 181 (364)
Q Consensus 104 AHGv~~~v~~~l~~~g~~iiDaTCP~V~kv~~~v~~~~~~Gy~iIIiG~~~HpEv~gi~g-~~~-~~~vv~~~~e~~~~~ 181 (364)
||||||++++.|++||++++|||||+|+|+|+.|++++++||+||+||+++||||+|+.| |++ ..+++++++|+..+.
T Consensus 74 AHGVs~~v~~~a~~r~l~v~DATCPlVtKvh~~v~~~~~~G~~iIliG~~gHpEv~Gt~Gq~~~~~~~lve~~~d~~~l~ 153 (294)
T COG0761 74 AHGVSPAVREEAKERGLKVIDATCPLVTKVHKEVERYAREGYEIILIGHKGHPEVIGTMGQYPEGGVLLVESVEDVANLK 153 (294)
T ss_pred CCCCCHHHHHHHHHCCCEEEecCCCcchHHHHHHHHHHhCCCEEEEEccCCCCceeeeccccCCCceEEEecHHHHHhcc
Confidence 999999999999999999999999999999999999999999999999999999999999 544 389999999997751
Q ss_pred hhhcCCCCCCCCChHHHHHHHHHhhhcCCCCCCCCCceEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccc
Q 017886 182 DYILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFN 261 (364)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~v~n 261 (364)
.. ..+++++++|||+|.++|.+|+++|+.+||+. ++.++|
T Consensus 154 -----------------------------~~---~~~~l~~~tQTTls~ddt~~Iv~~l~~r~p~~--------~~~~~~ 193 (294)
T COG0761 154 -----------------------------VQ---LPDKLAFVTQTTLSVDDTAEIVAALKERFPKI--------EVPPFN 193 (294)
T ss_pred -----------------------------cC---CcccEEEEeeeecCHHHHHHHHHHHHHhCccc--------cCCccc
Confidence 11 12489999999999999999999999865543 466899
Q ss_pred cccHHHHHHHHHHHHhhhhCCCEEEEEcCCCCchhHHHHHHHHhhCCCeEEeCCCCccCCCCcchhhhccchhhhhcccC
Q 017886 262 TICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWL 341 (364)
Q Consensus 262 TIC~AT~~RQ~a~~eLa~~~vD~miVVGGknSSNT~rL~eia~~~~~~t~~Ie~~~eL~~~~~~~~~~~~~~~~~~~~wl 341 (364)
||||||++||+|+++|| .+||+||||||+|||||+||+|||++.|.++|+|++++||++ +||
T Consensus 194 ~ICyAT~nRQ~Avk~la-~~~Dl~iVVG~~nSSNs~rL~eiA~~~g~~aylId~~~ei~~-----------------~w~ 255 (294)
T COG0761 194 DICYATQNRQDAVKELA-PEVDLVIVVGSKNSSNSNRLAEIAKRHGKPAYLIDDAEEIDP-----------------EWL 255 (294)
T ss_pred ccchhhhhHHHHHHHHh-hcCCEEEEECCCCCccHHHHHHHHHHhCCCeEEeCChHhCCH-----------------HHh
Confidence 99999999999999999 789999999999999999999999999999999999999999 999
Q ss_pred CCCCCEEEEEeCCCCCHHHHhcC
Q 017886 342 PKGQITIGITSGASTPDKVISSA 364 (364)
Q Consensus 342 ~~~~~~VGITAGASTP~~lI~e~ 364 (364)
.+..+||||||||||||||++|
T Consensus 256 -~~~~~VGvTAGAStPd~lV~~V 277 (294)
T COG0761 256 -KGVKTVGVTAGASTPDWLVQEV 277 (294)
T ss_pred -cCccEEEEecCCCCCHHHHHHH
Confidence 6899999999999999999875
No 7
>PF02401 LYTB: LytB protein; InterPro: IPR003451 Terpenes are among the largest groups of natural products and include compounds such as vitamins, cholesterol and carotenoids. The biosynthesis of all terpenoids begins with one or both of the two C5 precursors of the pathway: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). In animals, fungi, and certain bacteria, the synthesis of IPP and DMAPP occurs via the well-known mevalonate pathway, however, a second, nonmevalonate terpenoid pathway has been identified in many eubacteria, algae and the chloroplasts of higher plants []. LytB(IspH) catalyses the conversion of 1-hydroy-2-methyl-2-(E)-butenyl 4-diphosphate into IPP and DMAPP in this second pathway The enzyme appears to be responsible for a branch-step in the nonmevalonate pathway, in that IPP and DMAPP are produced in parallel from a single precursor although the exact mechanism of this is not currently fully understood []. Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response [].; GO: 0019288 isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, 0055114 oxidation-reduction process; PDB: 3DNF_B 3SZL_B 3KE8_B 3KEF_B 3SZU_A 3KEL_A 3F7T_B 3KE9_B 3KEM_B 3T0G_A ....
Probab=100.00 E-value=4.9e-99 Score=727.04 Aligned_cols=272 Identities=39% Similarity=0.627 Sum_probs=223.1
Q ss_pred EEEeCCCCCcccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHHcCcEEecCCccccccccccCCCEEEEcCCC
Q 017886 27 VKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFG 106 (364)
Q Consensus 27 I~lA~~~GFC~GV~RAi~~a~~~~~~~~~~~vy~lG~iIHN~~Vv~~L~~~Gv~~v~~~~~~~~~~~l~~g~~VIIrAHG 106 (364)
|++|+++||||||+|||++|++++++++ ++||+||||||||+|+++|+++||.++++ ++++++|++|||||||
T Consensus 1 I~lA~~~GfC~GV~rAi~~a~~~~~~~~-~~vy~lG~iIHN~~vv~~L~~~Gv~~v~~------~~~~~~g~~ViirAHG 73 (281)
T PF02401_consen 1 IILAKPAGFCFGVKRAIEIAEEALEEYP-GPVYTLGPIIHNPQVVERLEKRGVKVVDD------IDEVPEGDTVIIRAHG 73 (281)
T ss_dssp EEE-TT-SS-HHHHHHHHHHHHHCCCHS-S-EEECS-SSS-HHHHHHHHHCTEEEESS------GCGS-TTEEEEE-TT-
T ss_pred CEecCCCCcCccHHHHHHHHHHHHHhcC-CCEEEecCcccCHHHHHHHHHCCCEEecC------ccccCCCCEEEEeCCC
Confidence 6899999999999999999999998754 59999999999999999999999999985 5788899999999999
Q ss_pred CCHHHHHHHHhcCCcEEeccCchhHHHHHHHHHHhhCCCeEEEEecCCCceeeeecccCC--cEEEEcChhhHHHhhhhh
Q 017886 107 AAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAG--KYIIVKNMKEAEYVCDYI 184 (364)
Q Consensus 107 v~~~v~~~l~~~g~~iiDaTCP~V~kv~~~v~~~~~~Gy~iIIiG~~~HpEv~gi~g~~~--~~~vv~~~~e~~~~~~~~ 184 (364)
+||+++++|+++|+.|||||||||+|+|++|++++++||+|||+|+++||||+|++||++ .+++|++++|++.+.
T Consensus 74 v~~~~~~~l~~~g~~viDaTCP~V~k~~~~v~~~~~~Gy~iviiG~~~HpEv~gi~g~~~~~~~~vv~~~~~~~~l~--- 150 (281)
T PF02401_consen 74 VPPEVYEELKERGLEVIDATCPFVKKIHKIVRKYAKEGYQIVIIGDKNHPEVIGILGYAPEEKAIVVESPEDVEKLP--- 150 (281)
T ss_dssp --HHHHHHHHHTTEEEEE---HHHHHHHHHHHHHHHCT-EEEEES-TT-HHHHHHHCCHHTS-EEEESSHHHHHHGG---
T ss_pred CCHHHHHHHHHcCCEEEECCChhHHHHHHHHHHHHhcCCEEEEECCCCCceEEEecccccCCceEEeCChhhhcccC---
Confidence 999999999999999999999999999999999999999999999999999999999997 689999999987651
Q ss_pred cCCCCCCCCChHHHHHHHHHhhhcCCCCCCCCCceEEEEEcCCCChHHHHHHHHHHHHHHhhhccccccccccccccccc
Q 017886 185 LGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTIC 264 (364)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~v~nTIC 264 (364)
...++|+++||||||+.++|++|+++|+++++.. ...++||||
T Consensus 151 -----------------------------~~~~~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~--------~~~~~nTIC 193 (281)
T PF02401_consen 151 -----------------------------ISDPKKVAVVSQTTQSVEKFEEIVEALKKRFPEL--------EGPVFNTIC 193 (281)
T ss_dssp -----------------------------GSSTTCEEEEE-TTS-HHHHHHHHHHHHHHSTCE--------E-SCC-S--
T ss_pred -----------------------------CCCCCeEEEEEeecccHHHHHHHHHHHHHhCccc--------cCCCCCCCC
Confidence 1123699999999999999999999998843332 124899999
Q ss_pred HHHHHHHHHHHHhhhhCCCEEEEEcCCCCchhHHHHHHHHhhCCCeEEeCCCCccCCCCcchhhhccchhhhhcccCCCC
Q 017886 265 DATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPKG 344 (364)
Q Consensus 265 ~AT~~RQ~a~~eLa~~~vD~miVVGGknSSNT~rL~eia~~~~~~t~~Ie~~~eL~~~~~~~~~~~~~~~~~~~~wl~~~ 344 (364)
+||++||+|+++|| ++||+||||||+|||||+||||+|++.|+++||||+++||++ +|| ++
T Consensus 194 ~aT~~RQ~a~~~La-~~vD~miVIGg~~SsNT~kL~eia~~~~~~t~~Ie~~~el~~-----------------~~l-~~ 254 (281)
T PF02401_consen 194 YATQNRQEAARELA-KEVDAMIVIGGKNSSNTRKLAEIAKEHGKPTYHIETADELDP-----------------EWL-KG 254 (281)
T ss_dssp CHHHHHHHHHHHHH-CCSSEEEEES-TT-HHHHHHHHHHHHCTTCEEEESSGGG--H-----------------HHH-TT
T ss_pred HhHHHHHHHHHHHH-hhCCEEEEecCCCCccHHHHHHHHHHhCCCEEEeCCccccCH-----------------hHh-CC
Confidence 99999999999999 799999999999999999999999999999999999999998 999 78
Q ss_pred CCEEEEEeCCCCCHHHHhcC
Q 017886 345 QITIGITSGASTPDKVISSA 364 (364)
Q Consensus 345 ~~~VGITAGASTP~~lI~e~ 364 (364)
+++||||||||||+|+|++|
T Consensus 255 ~~~VGItaGASTP~~ii~eV 274 (281)
T PF02401_consen 255 VKKVGITAGASTPDWIIEEV 274 (281)
T ss_dssp -SEEEEEE-TTS-HHHHHHH
T ss_pred CCEEEEEccCCCCHHHHHHH
Confidence 99999999999999999985
No 8
>PRK00087 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein; Reviewed
Probab=100.00 E-value=6.2e-91 Score=735.73 Aligned_cols=270 Identities=34% Similarity=0.562 Sum_probs=253.4
Q ss_pred eEEEEeCCCCCcccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHHcCcEEecCCccccccccccCCCEEEEcC
Q 017886 25 VKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPA 104 (364)
Q Consensus 25 mkI~lA~~~GFC~GV~RAi~~a~~~~~~~~~~~vy~lG~iIHN~~Vv~~L~~~Gv~~v~~~~~~~~~~~l~~g~~VIIrA 104 (364)
|+|++|+++||||||+|||++|+++++++ +++|||||||||||||+++|+++||.++++ ++++++|++|||||
T Consensus 1 m~i~~a~~~GfC~GV~rAi~~~~~~~~~~-~~~i~~lg~ivHN~~vv~~l~~~Gv~~v~~------~~~~~~~~~vii~a 73 (647)
T PRK00087 1 MEIILAKKAGFCFGVKRAVDTAIKTAEEL-KGKIYTLGPLIHNNQVVEKLKKKGIKPIED------IDELNEGDTIIIRS 73 (647)
T ss_pred CEEEEeCCCCcCccHHHHHHHHHHHHHhc-CCCEEEeCCCcCCHHHHHHHHHCCCEEeCC------HhhCCCCCEEEEeC
Confidence 89999999999999999999999987755 478999999999999999999999999974 68888899999999
Q ss_pred CCCCHHHHHHHHhcCCcEEeccCchhHHHHHHHHHHhhCCCeEEEEecCCCceeeeecccCC-cEEEEcChhhHHHhhhh
Q 017886 105 FGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAG-KYIIVKNMKEAEYVCDY 183 (364)
Q Consensus 105 HGv~~~v~~~l~~~g~~iiDaTCP~V~kv~~~v~~~~~~Gy~iIIiG~~~HpEv~gi~g~~~-~~~vv~~~~e~~~~~~~ 183 (364)
||+||+++++|+++|+.|||||||+|+|+|++|++++++||+|||+|+++||||+|+.||++ .++||++++|++.+.
T Consensus 74 HG~~~~~~~~~~~~~~~viDaTCP~V~k~~~~~~~~~~~g~~ivi~G~~~HpEv~g~~g~~~~~~~vv~~~~~~~~~~-- 151 (647)
T PRK00087 74 HGVPPEVLEELKDKGLKVIDATCPFVKNIQKLAKKYYEEGYQIVIVGDKNHPEVIGINGWCNNSAIIVEDGEEAEKLP-- 151 (647)
T ss_pred CCCCHHHHHHHHHCCCeEEECCCcCchHHHHHHHHHHhCCCEEEEEeCCCCCeeeeeccccCCCEEEECCHHHHhhCC--
Confidence 99999999999999999999999999999999999999999999999999999999999997 578999999987641
Q ss_pred hcCCCCCCCCChHHHHHHHHHhhhcCCCCCCCCCceEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccccc
Q 017886 184 ILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTI 263 (364)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~v~nTI 263 (364)
..+++++++||||+.++|++|++.|++ + .++++++|||
T Consensus 152 --------------------------------~~~~~~~~~QTT~~~~~~~~~~~~l~~----~------~~~~~~~~ti 189 (647)
T PRK00087 152 --------------------------------FDKKICVVSQTTEKQENFEKVLKELKK----K------GKEVKVFNTI 189 (647)
T ss_pred --------------------------------CCCCEEEEEcCCCcHHHHHHHHHHHHH----h------CCCcccCCCc
Confidence 125899999999999999999999987 3 2457889999
Q ss_pred cHHHHHHHHHHHHhhhhCCCEEEEEcCCCCchhHHHHHHHHhhCCCeEEeCCCCccCCCCcchhhhccchhhhhcccCCC
Q 017886 264 CDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPK 343 (364)
Q Consensus 264 C~AT~~RQ~a~~eLa~~~vD~miVVGGknSSNT~rL~eia~~~~~~t~~Ie~~~eL~~~~~~~~~~~~~~~~~~~~wl~~ 343 (364)
|+||++||+|+++|| +++|+||||||+|||||+||++||++.|+||||||+++||++ +|| .
T Consensus 190 C~at~~Rq~a~~~la-~~~d~~~vvGg~~SsNt~~L~~i~~~~~~~~~~ie~~~el~~-----------------~~~-~ 250 (647)
T PRK00087 190 CNATEVRQEAAEKLA-KKVDVMIVVGGKNSSNTTKLYEICKSNCTNTIHIENAGELPE-----------------EWF-K 250 (647)
T ss_pred chhhhhHHHHHHHHH-hhCCEEEEECCCCCccHHHHHHHHHHHCCCEEEECChHHCCH-----------------HHh-C
Confidence 999999999999999 799999999999999999999999999999999999999999 999 6
Q ss_pred CCCEEEEEeCCCCCHHHHhcC
Q 017886 344 GQITIGITSGASTPDKVISSA 364 (364)
Q Consensus 344 ~~~~VGITAGASTP~~lI~e~ 364 (364)
++.+||||||||||+|+|++|
T Consensus 251 ~~~~vgitagaStP~~~i~~v 271 (647)
T PRK00087 251 GVKIIGVTAGASTPDWIIEEV 271 (647)
T ss_pred CCCEEEEEeccCCCHHHHHHH
Confidence 899999999999999999985
No 9
>PF02401 LYTB: LytB protein; InterPro: IPR003451 Terpenes are among the largest groups of natural products and include compounds such as vitamins, cholesterol and carotenoids. The biosynthesis of all terpenoids begins with one or both of the two C5 precursors of the pathway: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). In animals, fungi, and certain bacteria, the synthesis of IPP and DMAPP occurs via the well-known mevalonate pathway, however, a second, nonmevalonate terpenoid pathway has been identified in many eubacteria, algae and the chloroplasts of higher plants []. LytB(IspH) catalyses the conversion of 1-hydroy-2-methyl-2-(E)-butenyl 4-diphosphate into IPP and DMAPP in this second pathway The enzyme appears to be responsible for a branch-step in the nonmevalonate pathway, in that IPP and DMAPP are produced in parallel from a single precursor although the exact mechanism of this is not currently fully understood []. Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response [].; GO: 0019288 isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, 0055114 oxidation-reduction process; PDB: 3DNF_B 3SZL_B 3KE8_B 3KEF_B 3SZU_A 3KEL_A 3F7T_B 3KE9_B 3KEM_B 3T0G_A ....
Probab=96.53 E-value=0.049 Score=53.57 Aligned_cols=170 Identities=19% Similarity=0.147 Sum_probs=113.4
Q ss_pred CcccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHH---cCcEEecCCccccccccccC---CCEEEEcCCCCC
Q 017886 35 FCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEE---MAVQNIPVEEGKKQFDVVNK---GDVVVLPAFGAA 108 (364)
Q Consensus 35 FC~GV~RAi~~a~~~~~~~~~~~vy~lG~iIHN~~Vv~~L~~---~Gv~~v~~~~~~~~~~~l~~---g~~VIIrAHGv~ 108 (364)
=|.=|+++-+.+.+..++ +-.|.+.|+-=| |+|..-+.. ....++++.++ ++.++. ....++.=--.+
T Consensus 93 TCP~V~k~~~~v~~~~~~--Gy~iviiG~~~H-pEv~gi~g~~~~~~~~vv~~~~~---~~~l~~~~~~kv~vvsQTT~~ 166 (281)
T PF02401_consen 93 TCPFVKKIHKIVRKYAKE--GYQIVIIGDKNH-PEVIGILGYAPEEKAIVVESPED---VEKLPISDPKKVAVVSQTTQS 166 (281)
T ss_dssp --HHHHHHHHHHHHHHHC--T-EEEEES-TT--HHHHHHHCCHHTS-EEEESSHHH---HHHGGGSSTTCEEEEE-TTS-
T ss_pred CChhHHHHHHHHHHHHhc--CCEEEEECCCCC-ceEEEecccccCCceEEeCChhh---hcccCCCCCCeEEEEEeeccc
Confidence 377788888888887765 357999999666 555554421 34566665432 333332 346677777777
Q ss_pred H----HHHHHHHhcCCcEE----eccCchhHHHHHHHHHHhhCCCeEEEEecCCCceeeeecccC----CcEEEEcChhh
Q 017886 109 V----EEMVTLNNKNVQIV----DTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFA----GKYIIVKNMKE 176 (364)
Q Consensus 109 ~----~v~~~l~~~g~~ii----DaTCP~V~kv~~~v~~~~~~Gy~iIIiG~~~HpEv~gi~g~~----~~~~vv~~~~e 176 (364)
. ++.+.|+++.-.+. |+-|+--..=|..+++++++-.-+|++|.++-.-+.=+...| ..++.|++.+|
T Consensus 167 ~~~~~~i~~~l~~~~~~~~~~~~nTIC~aT~~RQ~a~~~La~~vD~miVIGg~~SsNT~kL~eia~~~~~~t~~Ie~~~e 246 (281)
T PF02401_consen 167 VEKFEEIVEALKKRFPELEGPVFNTICYATQNRQEAARELAKEVDAMIVIGGKNSSNTRKLAEIAKEHGKPTYHIETADE 246 (281)
T ss_dssp HHHHHHHHHHHHHHSTCEE-SCC-S--CHHHHHHHHHHHHHCCSSEEEEES-TT-HHHHHHHHHHHHCTTCEEEESSGGG
T ss_pred HHHHHHHHHHHHHhCccccCCCCCCCCHhHHHHHHHHHHHHhhCCEEEEecCCCCccHHHHHHHHHHhCCCEEEeCCccc
Confidence 6 46677888887776 999999999999999999999999999999999888876544 46899999999
Q ss_pred HHHhhhhhcCCCCCCCCChHHHHHHHHHhhhcCCCCCCCCCceEEEEEcCCCChHHHHHHHHHHHH
Q 017886 177 AEYVCDYILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLVEK 242 (364)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kv~vvsQTT~~~~~~~~i~~~l~~ 242 (364)
+..- .|+ ..++||+.+=+.=+.+..++++++|++
T Consensus 247 l~~~---------------------~l~-----------~~~~VGItaGASTP~~ii~eVi~~l~~ 280 (281)
T PF02401_consen 247 LDPE---------------------WLK-----------GVKKVGITAGASTPDWIIEEVIDRLEE 280 (281)
T ss_dssp --HH---------------------HHT-----------T-SEEEEEE-TTS-HHHHHHHHHHHHH
T ss_pred cCHh---------------------HhC-----------CCCEEEEEccCCCCHHHHHHHHHHHhc
Confidence 8531 111 125999999999999999999988864
No 10
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed
Probab=94.29 E-value=0.55 Score=46.66 Aligned_cols=170 Identities=13% Similarity=0.164 Sum_probs=118.9
Q ss_pred CcccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHHc--CcEEecCCccccccccc--cC-CCEEEEcCCCCCH
Q 017886 35 FCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEM--AVQNIPVEEGKKQFDVV--NK-GDVVVLPAFGAAV 109 (364)
Q Consensus 35 FC~GV~RAi~~a~~~~~~~~~~~vy~lG~iIHN~~Vv~~L~~~--Gv~~v~~~~~~~~~~~l--~~-g~~VIIrAHGv~~ 109 (364)
=|.=|+++=+.+.+..++ +-.|.++|+==| |+|..-+..- ...++++.+ +++.+ +. ....++.=--.+.
T Consensus 95 TCP~V~k~~~~v~~~~~~--Gy~vvi~G~~~H-pEv~gi~g~~~~~~~vv~~~~---e~~~l~~~~~~~v~vvsQTT~~~ 168 (298)
T PRK01045 95 TCPLVTKVHKEVARMSRE--GYEIILIGHKGH-PEVEGTMGQAPGGVYLVESPE---DVAKLEVKDPDKLALVTQTTLSV 168 (298)
T ss_pred CCccchHHHHHHHHHHhC--CCEEEEEeCCCC-CeeeeeccCcCCCEEEEcCHH---HHhhcccCCCCcEEEEEcCCCcH
Confidence 377777777777777665 346888888655 3343333221 134454432 23333 22 3345555555555
Q ss_pred H----HHHHHHhcC--CcE--EeccCchhHHHHHHHHHHhhCCCeEEEEecCCCceeeeecccC----CcEEEEcChhhH
Q 017886 110 E----EMVTLNNKN--VQI--VDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFA----GKYIIVKNMKEA 177 (364)
Q Consensus 110 ~----v~~~l~~~g--~~i--iDaTCP~V~kv~~~v~~~~~~Gy~iIIiG~~~HpEv~gi~g~~----~~~~vv~~~~e~ 177 (364)
+ +.+.|+++. +.+ .|+-|.-...=|+.+++++++=.-+|++|.++-.-+.=+...| ..++.|++.+|+
T Consensus 169 ~~~~~i~~~l~~~~~~~~v~~~nTIC~aT~~RQ~a~~~La~~vD~miVVGg~~SsNT~kL~~i~~~~~~~t~~Ie~~~el 248 (298)
T PRK01045 169 DDTAEIIAALKERFPEIQGPPKDDICYATQNRQEAVKELAPQADLVIVVGSKNSSNSNRLREVAEEAGAPAYLIDDASEI 248 (298)
T ss_pred HHHHHHHHHHHHhCcCcccCCCCCcchhhHHHHHHHHHHHhhCCEEEEECCCCCccHHHHHHHHHHHCCCEEEECChHHC
Confidence 5 455566555 777 9999999999999999999999999999999999888776544 368899999997
Q ss_pred HHhhhhhcCCCCCCCCChHHHHHHHHHhhhcCCCCCCCCCceEEEEEcCCCChHHHHHHHHHHHH
Q 017886 178 EYVCDYILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLVEK 242 (364)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kv~vvsQTT~~~~~~~~i~~~l~~ 242 (364)
+.- + | . ..++||+.+=+.=+.+..++++.+|+.
T Consensus 249 ~~~------------------~---l--------~---~~~~VGitaGASTP~~li~eV~~~l~~ 281 (298)
T PRK01045 249 DPE------------------W---F--------K---GVKTVGVTAGASAPEWLVQEVIARLKE 281 (298)
T ss_pred cHH------------------H---h--------c---CCCEEEEEecCCCCHHHHHHHHHHHHH
Confidence 520 1 1 1 126899999999999999999999876
No 11
>TIGR00216 ispH_lytB (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming). Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response.
Probab=92.85 E-value=1.1 Score=44.20 Aligned_cols=169 Identities=15% Similarity=0.106 Sum_probs=115.4
Q ss_pred cccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHH--cCcEEecCCccccccccccC-CCEEEEcCCCCCHH--
Q 017886 36 CWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEE--MAVQNIPVEEGKKQFDVVNK-GDVVVLPAFGAAVE-- 110 (364)
Q Consensus 36 C~GV~RAi~~a~~~~~~~~~~~vy~lG~iIHN~~Vv~~L~~--~Gv~~v~~~~~~~~~~~l~~-g~~VIIrAHGv~~~-- 110 (364)
|.=|+++-..+.+..++ +-.|.+.|+==| |+|..-+.. ....++++.+ +++.++. ....++.=--.+.+
T Consensus 96 CP~V~kv~~~v~~~~~~--Gy~iiiiG~~~H-pEv~gi~g~~~~~~~vv~~~~---d~~~l~~~~~v~vvsQTT~~~~~~ 169 (280)
T TIGR00216 96 CPLVTKVHNAVKKYAKE--GYHVILIGKKNH-PEVIGTRGYAPDKAIVVETLE---DLENFKVEDLLGVVSQTTLSQEDT 169 (280)
T ss_pred CcccHHHHHHHHHHHhC--CCEEEEEeCCCC-CeeeeeccCcCCCEEEECCHH---HHHhCCCCCcEEEEEcCCCcHHHH
Confidence 66677777777666664 346777777555 333332221 1244455432 3344432 23445554445544
Q ss_pred --HHHHHHhcC----CcEEeccCchhHHHHHHHHHHhhCCCeEEEEecCCCceeeeecccC----CcEEEEcChhhHHHh
Q 017886 111 --EMVTLNNKN----VQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFA----GKYIIVKNMKEAEYV 180 (364)
Q Consensus 111 --v~~~l~~~g----~~iiDaTCP~V~kv~~~v~~~~~~Gy~iIIiG~~~HpEv~gi~g~~----~~~~vv~~~~e~~~~ 180 (364)
+.+.|+++. +.+.|+-|.-...=|+.+++++++=.-+|++|.++-.-+.=+...| ..++.|++.+|++.
T Consensus 170 ~~i~~~l~~~~~~~~~~~~nTIC~AT~~RQ~a~~~la~~vD~miVVGg~nSsNT~rL~ei~~~~~~~t~~Ie~~~el~~- 248 (280)
T TIGR00216 170 KEIVAELKARVPQKEVPVFNTICYATQNRQDAVKELAPEVDLMIVIGGKNSSNTTRLYEIAEEHGPPSYLIETAEELPE- 248 (280)
T ss_pred HHHHHHHHHhCCCcCCCCCCCcccccHHHHHHHHHHHhhCCEEEEECCCCCchHHHHHHHHHHhCCCEEEECChHHCCH-
Confidence 445566666 7889999999999999999999999999999999999888776444 35889999999752
Q ss_pred hhhhcCCCCCCCCChHHHHHHHHHhhhcCCCCCCCCCceEEEEEcCCCChHHHHHHHHHHHH
Q 017886 181 CDYILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLVEK 242 (364)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kv~vvsQTT~~~~~~~~i~~~l~~ 242 (364)
+.| + ..++||+.+=+.=+.+..++++++|++
T Consensus 249 --------------------~~l--------~---~~~~VGiTAGASTP~~li~eVi~~l~~ 279 (280)
T TIGR00216 249 --------------------EWL--------K---GVKVVGITAGASTPDWIIEEVIRKIKE 279 (280)
T ss_pred --------------------HHh--------C---CCCEEEEEecCCCCHHHHHHHHHHHHh
Confidence 111 1 125899999999999999999888753
No 12
>PRK12360 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=92.07 E-value=1.4 Score=43.46 Aligned_cols=170 Identities=17% Similarity=0.130 Sum_probs=114.2
Q ss_pred CcccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHHc--CcEEecCCccccccccccC-CCEEEEcCCCCCHHH
Q 017886 35 FCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEM--AVQNIPVEEGKKQFDVVNK-GDVVVLPAFGAAVEE 111 (364)
Q Consensus 35 FC~GV~RAi~~a~~~~~~~~~~~vy~lG~iIHN~~Vv~~L~~~--Gv~~v~~~~~~~~~~~l~~-g~~VIIrAHGv~~~v 111 (364)
=|.=|+++-..+.+..++ +-.|...|+==| |+|..-+..- ...++++.+ +++.++. ....++.=--.+.+.
T Consensus 98 TCP~V~k~~~~v~~~~~~--Gy~iviiG~~~H-pEv~gi~g~~~~~~~vv~~~~---d~~~l~~~~kv~~vsQTT~~~~~ 171 (281)
T PRK12360 98 TCPFVKKIQNIVEEYYNK--GYSIIIVGDKNH-PEVIGINGWCDNSAYIVNSIE---EVENIPFLDKACVVAQTTIIPEL 171 (281)
T ss_pred CCccchHHHHHHHHHHhC--CCEEEEEcCCCC-ceeeEeccCcCCCeEEECCHH---HHhhCccccCEEEEECCCCcHHH
Confidence 366677777777776664 346777787544 3333322211 234455432 2333332 234455544555544
Q ss_pred ----HHHHHhc--CCcEEeccCchhHHHHHHHHHHhhCCCeEEEEecCCCceeeeecccC----CcEEEEcChhhHHHhh
Q 017886 112 ----MVTLNNK--NVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFA----GKYIIVKNMKEAEYVC 181 (364)
Q Consensus 112 ----~~~l~~~--g~~iiDaTCP~V~kv~~~v~~~~~~Gy~iIIiG~~~HpEv~gi~g~~----~~~~vv~~~~e~~~~~ 181 (364)
.+.|+++ .+.+.|+-|.-...=|+.+++++++=..+|++|.++-.-+.=+...| ..++.|++.+|++.
T Consensus 172 ~~~iv~~l~~~~~~~~v~~TIC~aT~~RQ~a~~~La~~vD~miVVGg~~SsNT~rL~eia~~~~~~t~~Ie~~~el~~-- 249 (281)
T PRK12360 172 WEDILNVIKLKSKELVFFNTICSATKKRQESAKELSKEVDVMIVIGGKHSSNTQKLVKICEKNCPNTFHIETADELDL-- 249 (281)
T ss_pred HHHHHHHHHHhCcccccCCCcchhhhhHHHHHHHHHHhCCEEEEecCCCCccHHHHHHHHHHHCCCEEEECChHHCCH--
Confidence 3445544 46679999999999999999999999999999999999888776444 35889999999742
Q ss_pred hhhcCCCCCCCCChHHHHHHHHHhhhcCCCCCCCCCceEEEEEcCCCChHHHHHHHHHHHH
Q 017886 182 DYILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLVEK 242 (364)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kv~vvsQTT~~~~~~~~i~~~l~~ 242 (364)
+.| . ..++||+.+=+.=+.+..++++++|++
T Consensus 250 -------------------~~~--------~---~~~~VGitaGASTP~~li~eV~~~l~~ 280 (281)
T PRK12360 250 -------------------EML--------K---DYKIIGITAGASTPDWIIEEVIKKIKN 280 (281)
T ss_pred -------------------HHh--------C---CCCEEEEEccCCCCHHHHHHHHHHHHh
Confidence 011 1 126899999999999999999888753
No 13
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=91.50 E-value=1.9 Score=38.65 Aligned_cols=90 Identities=17% Similarity=0.216 Sum_probs=58.5
Q ss_pred eEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHHHHHHHhhhhCCCEEEEEcCCCCchhHH
Q 017886 219 KVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSH 298 (364)
Q Consensus 219 kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ~a~~eLa~~~vD~miVVGGknSSNT~r 298 (364)
+++++.+.+ ...-+..+.+-+++...+. +-++.+.++-... ...++.++++.+..+|++|+.+...++- .
T Consensus 1 ~ig~v~~~~-~~~~~~~~~~g~~~~~~~~------g~~l~~~~~~~~~-~~~~~~~~~~~~~~~d~ii~~~~~~~~~-~- 70 (264)
T cd01537 1 TIGVLVPDL-DNPFFAQVLKGIEEAAKAA------GYQVLLANSQNDA-EKQLSALENLIARGVDGIIIAPSDLTAP-T- 70 (264)
T ss_pred CeEEEEcCC-CChHHHHHHHHHHHHHHHc------CCeEEEEeCCCCH-HHHHHHHHHHHHcCCCEEEEecCCCcch-h-
Confidence 467888776 4455677777777643332 2345566665543 3345566666656899999877665543 3
Q ss_pred HHHHHHhhCCCeEEeCCCCc
Q 017886 299 LQEIAEDRGIPSYWIDSEKR 318 (364)
Q Consensus 299 L~eia~~~~~~t~~Ie~~~e 318 (364)
+++.+.+.+.|.+.+.+..+
T Consensus 71 ~~~~l~~~~ip~v~~~~~~~ 90 (264)
T cd01537 71 IVKLARKAGIPVVLVDRDIP 90 (264)
T ss_pred HHHHhhhcCCCEEEeccCCC
Confidence 67888888999988876643
No 14
>COG1587 HemD Uroporphyrinogen-III synthase [Coenzyme metabolism]
Probab=87.78 E-value=6.3 Score=37.39 Aligned_cols=152 Identities=18% Similarity=0.222 Sum_probs=89.5
Q ss_pred ccchHHHHHHHcCCccc-ccceEE--------EEeCCCCCcccH---HHHHHHHHHHHhhCC-----CCceEEecccccC
Q 017886 5 YTSDIIKKLKENGFEYT-WGNVKV--------KLAESYGFCWGV---ERAVQIAYEARKQFP-----EEKIWITNEIIHN 67 (364)
Q Consensus 5 y~~~~~~~~~~~~~~~~-~~~mkI--------~lA~~~GFC~GV---~RAi~~a~~~~~~~~-----~~~vy~lG~iIHN 67 (364)
.-.++.+.|+..|+... +-.+++ .+..-.+|++=| .+|++...+.+.... ..++|+.|+
T Consensus 12 ~~~~~~~~l~~~G~~~~~~P~i~~~~~~~l~~~l~~l~~~d~vvfTS~~av~~~~~~l~~~~~~~~~~~~i~aVG~---- 87 (248)
T COG1587 12 QAEELAALLRKAGAEPLELPLIEIEPLPDLEVALEDLDSADWVVFTSPNAVRFFFEALKEQGLDALKNKKIAAVGE---- 87 (248)
T ss_pred hhHHHHHHHHhCCCcceeecceeeecchhHHHHHhccccCCEEEEECHHHHHHHHHHHHhhcccccccCeEEEEcH----
Confidence 44678888888887332 222222 222222334311 455555555444322 258999995
Q ss_pred HHHHHHHHHcCcEEecCCccc---cccccc---cC-C-CEEEEcCCCCCHHHHHHHHhcCCcEEe-----ccCchhHHHH
Q 017886 68 PTVNKRLEEMAVQNIPVEEGK---KQFDVV---NK-G-DVVVLPAFGAAVEEMVTLNNKNVQIVD-----TTCPWVSKVW 134 (364)
Q Consensus 68 ~~Vv~~L~~~Gv~~v~~~~~~---~~~~~l---~~-g-~~VIIrAHGv~~~v~~~l~~~g~~iiD-----aTCP~V~kv~ 134 (364)
..-+.|++.|+...--+++. ..++.+ .. | .++++|++|..+...+.|.++|..+.. ..+|... .+
T Consensus 88 -~Ta~~l~~~G~~~~~~p~~~~~~~l~~~l~~~~~~~~~vl~~~~~~~r~~l~~~L~~~G~~v~~~~~Y~~~~~~~~-~~ 165 (248)
T COG1587 88 -KTAEALRKLGIKVDFIPEDGDSEGLLEELPELLKGGKRVLILRGNGGREVLEEKLEERGAEVREVEVYRTEPPPLD-EA 165 (248)
T ss_pred -HHHHHHHHhCCCCCcCCCccchHHHHHHhhhhccCCCeEEEEcCCCchHHHHHHHHhCCCEEEEEeeeeecCCCcc-HH
Confidence 67799999998765433211 112222 22 2 456888888888999999999998844 3334444 44
Q ss_pred HHHHHHhhCCCeEEEEecCCCceeeeecccCCcEEEEcChhhHHHhhhh
Q 017886 135 TSVEKHKKGDYTSIIHGKYSHEETVATASFAGKYIIVKNMKEAEYVCDY 183 (364)
Q Consensus 135 ~~v~~~~~~Gy~iIIiG~~~HpEv~gi~g~~~~~~vv~~~~e~~~~~~~ 183 (364)
.....+..+++ +++++.|...++.+...
T Consensus 166 ~~~~~~~~~~~---------------------d~v~ftS~~~v~~~~~~ 193 (248)
T COG1587 166 TLIELLKLGEV---------------------DAVVFTSSSAVRALLAL 193 (248)
T ss_pred HHHHHHHhCCC---------------------CEEEEeCHHHHHHHHHH
Confidence 44555544443 35667777777766443
No 15
>PRK13371 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=85.79 E-value=7.8 Score=40.03 Aligned_cols=110 Identities=13% Similarity=0.067 Sum_probs=75.4
Q ss_pred CCcEEeccCchhHHHHHHHHHHhh-CCCeEEEEecCCCceeeeecccC----CcEEEEcChhhHHHhhhhhcCCCCCCCC
Q 017886 119 NVQIVDTTCPWVSKVWTSVEKHKK-GDYTSIIHGKYSHEETVATASFA----GKYIIVKNMKEAEYVCDYILGGELNGSS 193 (364)
Q Consensus 119 g~~iiDaTCP~V~kv~~~v~~~~~-~Gy~iIIiG~~~HpEv~gi~g~~----~~~~vv~~~~e~~~~~~~~~~~~~~~~~ 193 (364)
.+.+.|+-|.-...=|+.++++++ +-.-+|+||.++-.-+.=+.-.| ..++.|++.+|+..- +-| .|.+
T Consensus 263 ~~~v~nTIC~AT~~RQ~A~~~La~~~vD~miVVGG~nSSNT~rL~eia~~~g~~ty~Ie~~~eL~~~-~~i-----~h~~ 336 (387)
T PRK13371 263 HFLSFNTICDATQERQDAMFSLVEEPLDLMVVIGGYNSSNTTHLQEIAIERGIPSYHIDSPERILSG-NSI-----EHKP 336 (387)
T ss_pred cccccCCcchhHHHHHHHHHHHhhcCCCEEEEECCCCCccHHHHHHHHHhcCCCEEEECCHHHcCCc-ccc-----cccc
Confidence 678899999999999999999986 68899999999888777665333 357899999987531 000 0000
Q ss_pred ChHHHHHHHHHhhhcCCCCCCCCCceEEEEEcCCCChHHHHHHHHHHHH
Q 017886 194 STKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLVEK 242 (364)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~kv~vvsQTT~~~~~~~~i~~~l~~ 242 (364)
-..+ ..+ -.+|+ +. ..++||+.+=+.-+....++++++|+.
T Consensus 337 ~~~~-~~~-t~~wl----~~--~~~~VGITAGASTP~~lI~eVi~~l~~ 377 (387)
T PRK13371 337 LGKE-LVV-TENWL----PE--GPVTVGITSGASTPDKVVEDVIEKIFA 377 (387)
T ss_pred ccch-hhh-hhhhh----cc--CCCEEEEecCCCCCHHHHHHHHHHHHH
Confidence 0000 000 00011 10 125899999999999999999999876
No 16
>PRK00087 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein; Reviewed
Probab=84.98 E-value=6.2 Score=43.02 Aligned_cols=170 Identities=18% Similarity=0.130 Sum_probs=118.4
Q ss_pred CcccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHHc--CcEEecCCccccccccccC-CCEEEEcCCCCCHH-
Q 017886 35 FCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEM--AVQNIPVEEGKKQFDVVNK-GDVVVLPAFGAAVE- 110 (364)
Q Consensus 35 FC~GV~RAi~~a~~~~~~~~~~~vy~lG~iIHN~~Vv~~L~~~--Gv~~v~~~~~~~~~~~l~~-g~~VIIrAHGv~~~- 110 (364)
=|.=|+++=+.|.+..++ +-.|...|+==| |+|..-+-.- ...++++.+ +++.++. ....++.=--.+.+
T Consensus 95 TCP~V~k~~~~~~~~~~~--g~~ivi~G~~~H-pEv~g~~g~~~~~~~vv~~~~---~~~~~~~~~~~~~~~QTT~~~~~ 168 (647)
T PRK00087 95 TCPFVKNIQKLAKKYYEE--GYQIVIVGDKNH-PEVIGINGWCNNSAIIVEDGE---EAEKLPFDKKICVVSQTTEKQEN 168 (647)
T ss_pred CCcCchHHHHHHHHHHhC--CCEEEEEeCCCC-CeeeeeccccCCCEEEECCHH---HHhhCCCCCCEEEEEcCCCcHHH
Confidence 477788888888777765 346888888655 3343332221 134555432 3333332 23445555555555
Q ss_pred ---HHHHHHhcC--CcEEeccCchhHHHHHHHHHHhhCCCeEEEEecCCCceeeeecccC----CcEEEEcChhhHHHhh
Q 017886 111 ---EMVTLNNKN--VQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFA----GKYIIVKNMKEAEYVC 181 (364)
Q Consensus 111 ---v~~~l~~~g--~~iiDaTCP~V~kv~~~v~~~~~~Gy~iIIiG~~~HpEv~gi~g~~----~~~~vv~~~~e~~~~~ 181 (364)
+.+.|+++. +.+.|+-|.-...=|+.+++++++=..+|++|.++-.-+.=+...| ..++.|++++|+..-
T Consensus 169 ~~~~~~~l~~~~~~~~~~~tiC~at~~Rq~a~~~la~~~d~~~vvGg~~SsNt~~L~~i~~~~~~~~~~ie~~~el~~~- 247 (647)
T PRK00087 169 FEKVLKELKKKGKEVKVFNTICNATEVRQEAAEKLAKKVDVMIVVGGKNSSNTTKLYEICKSNCTNTIHIENAGELPEE- 247 (647)
T ss_pred HHHHHHHHHHhCCCcccCCCcchhhhhHHHHHHHHHhhCCEEEEECCCCCccHHHHHHHHHHHCCCEEEECChHHCCHH-
Confidence 455566544 6779999999999999999999999999999999999888776544 368899999997530
Q ss_pred hhhcCCCCCCCCChHHHHHHHHHhhhcCCCCCCCCCceEEEEEcCCCChHHHHHHHHHHHH
Q 017886 182 DYILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLVEK 242 (364)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kv~vvsQTT~~~~~~~~i~~~l~~ 242 (364)
.| . ..++||+.+=+.=+.+..++++.+|++
T Consensus 248 --------------------~~--------~---~~~~vgitagaStP~~~i~~v~~~l~~ 277 (647)
T PRK00087 248 --------------------WF--------K---GVKIIGVTAGASTPDWIIEEVIKKMSE 277 (647)
T ss_pred --------------------Hh--------C---CCCEEEEEeccCCCHHHHHHHHHHHHH
Confidence 01 1 125899999999999999999998875
No 17
>PF02602 HEM4: Uroporphyrinogen-III synthase HemD; InterPro: IPR003754 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. This entry represents uroporphyrinogen III synthase (4.2.1.75 from EC) which functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses the inversion of the final pyrrole unit (ring D) of the linear tetrapyrrole molecule, linking it to the first pyrrole unit (ring A), thereby generating a large macrocyclic structure called uroporphyrinogen III []. The enzyme folds into two alpha/beta domains connected by a beta-ladder, the active site being located between the two domains []. Congenital erythropoietic porphyria (CEP) is an autosomal recessive inborn error of metabolism that results from the markedly deficient activity of uroporphyrinogen III synthase []. ; GO: 0004852 uroporphyrinogen-III synthase activity, 0033014 tetrapyrrole biosynthetic process; PDB: 1WD7_B 1WCX_A 1WCW_A 3D8R_A 3D8T_B 3D8S_A 3D8N_A 3RE1_A 3MW8_A 3P9Z_A ....
Probab=84.74 E-value=15 Score=33.54 Aligned_cols=149 Identities=14% Similarity=0.167 Sum_probs=86.1
Q ss_pred chHHHHHHHcCCcccccc-eEEEE-----------e-----CCCCCcccHHHHHHHHHHHHh-------hCCCCceEEec
Q 017886 7 SDIIKKLKENGFEYTWGN-VKVKL-----------A-----ESYGFCWGVERAVQIAYEARK-------QFPEEKIWITN 62 (364)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~-mkI~l-----------A-----~~~GFC~GV~RAi~~a~~~~~-------~~~~~~vy~lG 62 (364)
+++.+.|++.|+...+-. +++.- . ...++.|==.+|++...+.+. ...+.++|+.|
T Consensus 1 ~~l~~~l~~~G~~~~~~P~i~~~~~~~~~~l~~~l~~l~~~~~d~viftS~~av~~~~~~l~~~~~~~~~~~~~~i~avG 80 (231)
T PF02602_consen 1 SELAALLRALGAEVIELPLIEIEPLPDLASLEAALEQLPPGNYDWVIFTSPNAVRAFFKALQSAGADLRLLKNIKIFAVG 80 (231)
T ss_dssp -HHHHHHHHTTEEEEEEESEEEEECCHHHHHHHHHHHHTGCCSSEEEESSHHHHHHHHHHHHHTTHHHHHHHHSEEEESS
T ss_pred CHHHHHHHHCCCcEEEECCEEEEeCCCHHHHHHHHHhcccCCCCEEEEECHHHHHHHHHHHhhhhhhhhhccCCeEEEEc
Confidence 467788888886665543 34433 0 344455544555555443332 11135799988
Q ss_pred ccccCHHHHHHHHHcCcEE--ecC-Ccccccc----c-cccCCCEEEEcCCCCCHHHHHHHHhcCCcEEeccC---chhH
Q 017886 63 EIIHNPTVNKRLEEMAVQN--IPV-EEGKKQF----D-VVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTC---PWVS 131 (364)
Q Consensus 63 ~iIHN~~Vv~~L~~~Gv~~--v~~-~~~~~~~----~-~l~~g~~VIIrAHGv~~~v~~~l~~~g~~iiDaTC---P~V~ 131 (364)
+ ..-+.|++.|+.. +.. ....+.| . .+..+..+++|+.+..+...+.|++.|+.|.-..| |-..
T Consensus 81 ~-----~Ta~~l~~~G~~~~~~~~~~~~s~~L~~~l~~~~~~~~vl~~~g~~~~~~l~~~L~~~g~~v~~~~vY~~~~~~ 155 (231)
T PF02602_consen 81 P-----KTAEALREYGFQPDFVPSSEGSSEGLAELLKEQLRGKRVLILRGEGGRPDLPEKLREAGIEVTEVIVYETPPEE 155 (231)
T ss_dssp H-----HHHHHHHHTT-EECEE-TTSSSHHHHHGGHHHCCTTEEEEEEESSSSCHHHHHHHHHTTEEEEEEECEEEEEHH
T ss_pred H-----HHHHHHHHcCCCccccCCCCCCHHHHHHHHHhhCCCCeEEEEcCCCccHHHHHHHHHCCCeEEEEEEeeccccc
Confidence 5 6678999999997 443 1111112 2 22333467899999999999999999988743322 3333
Q ss_pred HHHHHHHHHhhCCCeEEEEecCCCceeeeecccCCcEEEEcChhhHHHhh
Q 017886 132 KVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAGKYIIVKNMKEAEYVC 181 (364)
Q Consensus 132 kv~~~v~~~~~~Gy~iIIiG~~~HpEv~gi~g~~~~~~vv~~~~e~~~~~ 181 (364)
......+.+....+ +++++.|+.-++.+.
T Consensus 156 ~~~~~~~~l~~~~~---------------------~~v~ftS~~~~~~~~ 184 (231)
T PF02602_consen 156 LSPELKEALDRGEI---------------------DAVVFTSPSAVRAFL 184 (231)
T ss_dssp HHHHHHHHHHHTTT---------------------SEEEESSHHHHHHHH
T ss_pred chHHHHHHHHcCCC---------------------CEEEECCHHHHHHHH
Confidence 44444444444443 456677777776553
No 18
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=82.10 E-value=11 Score=34.37 Aligned_cols=88 Identities=18% Similarity=0.177 Sum_probs=56.8
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHH-HHHHHhhhhCCCEEEEEcCCCCchhHH
Q 017886 220 VGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSNTSH 298 (364)
Q Consensus 220 v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ-~a~~eLa~~~vD~miVVGGknSSNT~r 298 (364)
|+|+.-++-+. -|..+.+-+++...+. + -++.+. .-+..+.++| +.++.+.+..+|++|| ....++.+..
T Consensus 1 I~vi~~~~~~~-~~~~~~~g~~~~a~~~-g-----~~~~~~-~~~~~d~~~q~~~i~~~i~~~~d~Iiv-~~~~~~~~~~ 71 (257)
T PF13407_consen 1 IGVIVPSMDNP-FWQQVIKGAKAAAKEL-G-----YEVEIV-FDAQNDPEEQIEQIEQAISQGVDGIIV-SPVDPDSLAP 71 (257)
T ss_dssp EEEEESSSSSH-HHHHHHHHHHHHHHHH-T-----CEEEEE-EESTTTHHHHHHHHHHHHHTTESEEEE-ESSSTTTTHH
T ss_pred cEEEeCCCCCH-HHHHHHHHHHHHHHHc-C-----CEEEEe-CCCCCCHHHHHHHHHHHHHhcCCEEEe-cCCCHHHHHH
Confidence 35555555555 6777777777643332 2 223332 2345555666 4555555578999885 4555566678
Q ss_pred HHHHHHhhCCCeEEeCCC
Q 017886 299 LQEIAEDRGIPSYWIDSE 316 (364)
Q Consensus 299 L~eia~~~~~~t~~Ie~~ 316 (364)
+++-|++.|.|.+.+.+.
T Consensus 72 ~l~~~~~~gIpvv~~d~~ 89 (257)
T PF13407_consen 72 FLEKAKAAGIPVVTVDSD 89 (257)
T ss_dssp HHHHHHHTTSEEEEESST
T ss_pred HHHHHhhcCceEEEEecc
Confidence 888899999999999998
No 19
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=80.84 E-value=7.4 Score=37.55 Aligned_cols=107 Identities=14% Similarity=0.148 Sum_probs=67.2
Q ss_pred HHHHHHHHHcCc---EEecCCccccccccccCCCEEEEcCCCCCHHHHHHHHhcCCcE-EeccCchhHHHHHHHHHHhhC
Q 017886 68 PTVNKRLEEMAV---QNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQI-VDTTCPWVSKVWTSVEKHKKG 143 (364)
Q Consensus 68 ~~Vv~~L~~~Gv---~~v~~~~~~~~~~~l~~g~~VIIrAHGv~~~v~~~l~~~g~~i-iDaTCP~V~kv~~~v~~~~~~ 143 (364)
+.+.+.|.++|. .++.+- +...+..-..+..|.+-..|=..+..+.++++|+.. ||||=||-..+++.+.+..++
T Consensus 13 r~la~~L~~~g~v~~sv~t~~-g~~~~~~~~~~~~v~~G~lg~~~~l~~~l~~~~i~~vIDATHPfA~~is~na~~a~~~ 91 (249)
T PF02571_consen 13 RKLAERLAEAGYVIVSVATSY-GGELLKPELPGLEVRVGRLGDEEGLAEFLRENGIDAVIDATHPFAAEISQNAIEACRE 91 (249)
T ss_pred HHHHHHHHhcCCEEEEEEhhh-hHhhhccccCCceEEECCCCCHHHHHHHHHhCCCcEEEECCCchHHHHHHHHHHHHhh
Confidence 456677777774 333321 111111111233577777877778889999999875 999999999999999998775
Q ss_pred -CCeEEEEecCCCceeeeecccCCcEEEEcChhhHHHh
Q 017886 144 -DYTSIIHGKYSHEETVATASFAGKYIIVKNMKEAEYV 180 (364)
Q Consensus 144 -Gy~iIIiG~~~HpEv~gi~g~~~~~~vv~~~~e~~~~ 180 (364)
|-..+=+-.+.=.... ....+.+.|.+|+...
T Consensus 92 ~~ipylR~eRp~~~~~~-----~~~~~~v~~~~eA~~~ 124 (249)
T PF02571_consen 92 LGIPYLRFERPSWQPEP-----DDNWHYVDSYEEAAEL 124 (249)
T ss_pred cCcceEEEEcCCcccCC-----CCeEEEeCCHHHHHHH
Confidence 5555545443211000 1235677888887654
No 20
>cd01391 Periplasmic_Binding_Protein_Type_1 Type 1 periplasmic binding fold superfamily. Type 1 periplasmic binding fold superfamily. This model and hierarchy represent the ligand binding domains of the LacI family of transcriptional regulators, periplasmic binding proteins of the ABC-type transport systems, the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases including the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domains of the ionotropic glutamate receptors (iGluRs). In LacI-like transcriptional regulator and the bacterial periplasmic binding proteins the ligands are monosaccharides including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars, with a few exceptions. Periplasmic sugar binding proteins are one of the components of ABC transporters and are involved in the active transport of water-soluble ligands. The LacI family of proteins con
Probab=80.67 E-value=13 Score=32.63 Aligned_cols=93 Identities=17% Similarity=0.150 Sum_probs=55.7
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHHHHHHHhhhhCCCEEEEEcCCCCchhHHH
Q 017886 220 VGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHL 299 (364)
Q Consensus 220 v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ~a~~eLa~~~vD~miVVGGknSSNT~rL 299 (364)
|+++.-.......+..+.+.++..+.+. + ..-++.++++-|.... -.+.+++++...+|++|..+.. .+...+
T Consensus 2 Ig~i~~~~~~~~~~~~~~~~~~~~~~~~-g---~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~d~ii~~~~~--~~~~~~ 74 (269)
T cd01391 2 IGVLLPLSGSAPFGAQLLAGIELAAEEI-G---RGLEVILADSQSDPER-ALEALRDLIQQGVDGIIGPPSS--SSALAV 74 (269)
T ss_pred ceEEeecCCCcHHHHHHHHHHHHHHHHh-C---CceEEEEecCCCCHHH-HHHHHHHHHHcCCCEEEecCCC--HHHHHH
Confidence 4444433213445666666666543332 0 1345678888887733 3344555664568888776554 344448
Q ss_pred HHHHHhhCCCeEEeCCCCcc
Q 017886 300 QEIAEDRGIPSYWIDSEKRI 319 (364)
Q Consensus 300 ~eia~~~~~~t~~Ie~~~eL 319 (364)
.+.+.+.+.|.+.+....+.
T Consensus 75 ~~~~~~~~ip~v~~~~~~~~ 94 (269)
T cd01391 75 VELAAAAGIPVVSLDATAPD 94 (269)
T ss_pred HHHHHHcCCcEEEecCCCCc
Confidence 88888999999888776543
No 21
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=78.39 E-value=10 Score=36.62 Aligned_cols=108 Identities=14% Similarity=0.192 Sum_probs=64.7
Q ss_pred cCHHHHHHHHHcCcEEecCCcccccccccc-CCCEEEEcCCCCCHHHHHHHHhcCCcE-EeccCchhHHHHHHHHHHhhC
Q 017886 66 HNPTVNKRLEEMAVQNIPVEEGKKQFDVVN-KGDVVVLPAFGAAVEEMVTLNNKNVQI-VDTTCPWVSKVWTSVEKHKKG 143 (364)
Q Consensus 66 HN~~Vv~~L~~~Gv~~v~~~~~~~~~~~l~-~g~~VIIrAHGv~~~v~~~l~~~g~~i-iDaTCP~V~kv~~~v~~~~~~ 143 (364)
--+++.+.|.++|+.++-+.-. +..... .+..|..-..|-..+..+.++++++.. ||||=||-..+.+.+.+..++
T Consensus 13 egr~la~~L~~~g~~v~~Svat--~~g~~~~~~~~v~~G~l~~~~~l~~~l~~~~i~~VIDATHPfA~~is~~a~~ac~~ 90 (248)
T PRK08057 13 EARALARALAAAGVDIVLSLAG--RTGGPADLPGPVRVGGFGGAEGLAAYLREEGIDLVIDATHPYAAQISANAAAACRA 90 (248)
T ss_pred HHHHHHHHHHhCCCeEEEEEcc--CCCCcccCCceEEECCCCCHHHHHHHHHHCCCCEEEECCCccHHHHHHHHHHHHHH
Confidence 3355666777777755432110 001111 133455555555577888888888765 999999999999999987764
Q ss_pred -CCeEEEEecCCCceeeeecccCCcEEEEcChhhHHHh
Q 017886 144 -DYTSIIHGKYSHEETVATASFAGKYIIVKNMKEAEYV 180 (364)
Q Consensus 144 -Gy~iIIiG~~~HpEv~gi~g~~~~~~vv~~~~e~~~~ 180 (364)
|-..+=+=.+ +.. ..-.+..+.+.|.+|+..+
T Consensus 91 ~~ipyiR~eR~---~~~--~~~~~~~~~v~s~~~a~~~ 123 (248)
T PRK08057 91 LGIPYLRLERP---SWL--PQPGDRWIEVDDIEEAAEA 123 (248)
T ss_pred hCCcEEEEeCC---CcC--CCCCCCEEEECCHHHHHHH
Confidence 6665555442 210 0001235677888887553
No 22
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=77.51 E-value=26 Score=34.53 Aligned_cols=108 Identities=7% Similarity=-0.003 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHHcCcEEecCCccccccccccCCCEE-EEcCCC-CCHHHHHHHHh
Q 017886 40 ERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVV-VLPAFG-AAVEEMVTLNN 117 (364)
Q Consensus 40 ~RAi~~a~~~~~~~~~~~vy~lG~iIHN~~Vv~~L~~~Gv~~v~~~~~~~~~~~l~~g~~V-IIrAHG-v~~~v~~~l~~ 117 (364)
|.-..++.++++. +-.|+.+ =+|+.-+++|...|....++.+ +.+..++...+| +.-.|| +++++.+.|..
T Consensus 10 rMG~n~v~rl~~~--ghdvV~y---D~n~~av~~~~~~ga~~a~sl~--el~~~L~~pr~vWlMvPag~it~~vi~~la~ 82 (300)
T COG1023 10 RMGANLVRRLLDG--GHDVVGY---DVNQTAVEELKDEGATGAASLD--ELVAKLSAPRIVWLMVPAGDITDAVIDDLAP 82 (300)
T ss_pred hhhHHHHHHHHhC--CCeEEEE---cCCHHHHHHHHhcCCccccCHH--HHHHhcCCCcEEEEEccCCCchHHHHHHHHh
Confidence 4456788888875 2346666 4899999999999977766522 123445544444 455566 99999888764
Q ss_pred ---cCCcEEeccCchhHHHHHHHHHHhhCCCeEEEEecCC
Q 017886 118 ---KNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYS 154 (364)
Q Consensus 118 ---~g~~iiDaTCP~V~kv~~~v~~~~~~Gy~iIIiG~~~ 154 (364)
.|=.|||.---+-+-.+++.+++.++|.+.+=+|-.+
T Consensus 83 ~L~~GDivIDGGNS~y~Ds~rr~~~l~~kgi~flD~GTSG 122 (300)
T COG1023 83 LLSAGDIVIDGGNSNYKDSLRRAKLLAEKGIHFLDVGTSG 122 (300)
T ss_pred hcCCCCEEEECCccchHHHHHHHHHHHhcCCeEEeccCCC
Confidence 7899999999999999999999999999999998665
No 23
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=77.34 E-value=18 Score=33.31 Aligned_cols=89 Identities=16% Similarity=0.131 Sum_probs=50.5
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHH-HHHHHhhhhCCCEEEEEcCCCCchhHH
Q 017886 220 VGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSNTSH 298 (364)
Q Consensus 220 v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ-~a~~eLa~~~vD~miVVGGknSSNT~r 298 (364)
++++. ..++-.-|..+.+.+++...+. + -++.+..+-.......| +.++.|....+|.+|+.+ ..+++...
T Consensus 2 igvi~-~~~~~~~~~~~~~gi~~~~~~~-g-----~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~-~~~~~~~~ 73 (275)
T cd06320 2 YGVVL-KTLSNEFWRSLKEGYENEAKKL-G-----VSVDIQAAPSEGDQQGQLSIAENMINKGYKGLLFSP-ISDVNLVP 73 (275)
T ss_pred eeEEE-ecCCCHHHHHHHHHHHHHHHHh-C-----CeEEEEccCCCCCHHHHHHHHHHHHHhCCCEEEECC-CChHHhHH
Confidence 44444 2244556777777776643322 1 22333322223334444 555666556799998764 34445445
Q ss_pred HHHHHHhhCCCeEEeCCC
Q 017886 299 LQEIAEDRGIPSYWIDSE 316 (364)
Q Consensus 299 L~eia~~~~~~t~~Ie~~ 316 (364)
.++.+++.+.|...+.+.
T Consensus 74 ~~~~~~~~~iPvV~~~~~ 91 (275)
T cd06320 74 AVERAKKKGIPVVNVNDK 91 (275)
T ss_pred HHHHHHHCCCeEEEECCC
Confidence 566777889999888764
No 24
>cd01536 PBP1_ABC_sugar_binding_like Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. The members of this family function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea. The sugar binding domain is also homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR. Moreover, this periplasmic binding domain, also known as Venus flytrap domain, undergoes transition from an open to a closed conformational state upon the binding of ligands such as lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. This family also includes the periplasmic binding domain of autoinducer-2 (AI-2
Probab=76.90 E-value=29 Score=31.23 Aligned_cols=90 Identities=17% Similarity=0.204 Sum_probs=53.8
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHHHHHHHhhhhCCCEEEEEcCCCCchhHHH
Q 017886 220 VGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHL 299 (364)
Q Consensus 220 v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ~a~~eLa~~~vD~miVVGGknSSNT~rL 299 (364)
|+++...+ +..-|.++.+.+++...++ +-++.++++--+. ..-++.+++|...++|.+|+.+. +++.....
T Consensus 2 ig~i~p~~-~~~~~~~~~~~~~~~a~~~------g~~~~~~~~~~~~-~~~~~~~~~l~~~~vdgvi~~~~-~~~~~~~~ 72 (267)
T cd01536 2 IGLVVPSL-NNPFWQAMNKGAEAAAKEL------GVELIVLDAQNDV-SKQIQQIEDLIAQGVDGIIISPV-DSAALTPA 72 (267)
T ss_pred EEEEeccc-cCHHHHHHHHHHHHHHHhc------CceEEEECCCCCH-HHHHHHHHHHHHcCCCEEEEeCC-CchhHHHH
Confidence 56666554 4556777777776643322 2344555444322 22236666766568999998764 34443445
Q ss_pred HHHHHhhCCCeEEeCCCCc
Q 017886 300 QEIAEDRGIPSYWIDSEKR 318 (364)
Q Consensus 300 ~eia~~~~~~t~~Ie~~~e 318 (364)
.+..++.+.|...+....+
T Consensus 73 ~~~l~~~~ip~V~~~~~~~ 91 (267)
T cd01536 73 LKKANAAGIPVVTVDSDID 91 (267)
T ss_pred HHHHHHCCCcEEEecCCCC
Confidence 5666677889988887543
No 25
>cd06310 PBP1_ABC_sugar_binding_like_2 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=76.27 E-value=22 Score=32.56 Aligned_cols=90 Identities=16% Similarity=0.083 Sum_probs=52.1
Q ss_pred eEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHHH-HHHHhhhhCCCEEEEEcCCCCchhH
Q 017886 219 KVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQD-AMYKMVEEKVDLILVVGGWNSSNTS 297 (364)
Q Consensus 219 kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ~-a~~eLa~~~vD~miVVGGknSSNT~ 297 (364)
||+++.. +++-.-|..+...+.+...+. +-.+.+.++-......+|. .+..|....+|.+|+.+... .-+.
T Consensus 1 ~Igvi~~-~~~~~~~~~~~~g~~~~~~~~------g~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgvii~~~~~-~~~~ 72 (273)
T cd06310 1 KIALVPK-GTTSDFWQAVKAGAEAAAKEL------GVKVTFQGPASETDVAGQVNLLENAIARGPDAILLAPTDA-KALV 72 (273)
T ss_pred CeEEEec-CCCcHHHHHHHHHHHHHHHHc------CCEEEEecCccCCCHHHHHHHHHHHHHhCCCEEEEcCCCh-hhhH
Confidence 5777775 456666777877776643332 1223333221123445554 45555556899999976432 2223
Q ss_pred HHHHHHHhhCCCeEEeCCC
Q 017886 298 HLQEIAEDRGIPSYWIDSE 316 (364)
Q Consensus 298 rL~eia~~~~~~t~~Ie~~ 316 (364)
..++.+++.+.|...+++.
T Consensus 73 ~~l~~~~~~~ipvV~~~~~ 91 (273)
T cd06310 73 PPLKEAKDAGIPVVLIDSG 91 (273)
T ss_pred HHHHHHHHCCCCEEEecCC
Confidence 3445555778999999764
No 26
>PLN02821 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase
Probab=75.94 E-value=50 Score=34.99 Aligned_cols=111 Identities=14% Similarity=0.100 Sum_probs=81.5
Q ss_pred cCCcEEeccCchhHHHHHHHHHHh-hCCCeEEEEecCCCceeeeecccC----CcEEEEcChhhHHHhhhhhcCCCCCCC
Q 017886 118 KNVQIVDTTCPWVSKVWTSVEKHK-KGDYTSIIHGKYSHEETVATASFA----GKYIIVKNMKEAEYVCDYILGGELNGS 192 (364)
Q Consensus 118 ~g~~iiDaTCP~V~kv~~~v~~~~-~~Gy~iIIiG~~~HpEv~gi~g~~----~~~~vv~~~~e~~~~~~~~~~~~~~~~ 192 (364)
..+.+.|+-|.-...=|+.+.+++ ++-.-+|+||.++-.-+.=+.-.| ..++.|++.+|+..- +.|.++.+.|+
T Consensus 336 ~~~~vfnTIC~ATqeRQdA~~~L~~~~vDlmiVVGG~NSSNT~~L~eIa~~~g~~sy~Ie~~~eI~~~-~~i~h~~~~~e 414 (460)
T PLN02821 336 DHFMSFNTICDATQERQDAMYKLVEEKLDLMLVVGGWNSSNTSHLQEIAEHKGIPSYWIDSEERIGPG-NTIAHKLNHGE 414 (460)
T ss_pred ccccccCCcchhHHHHHHHHHHHhhcCCCEEEEECCCCCccHHHHHHHHHHhCCCEEEECCHHHcCcc-cccccccccch
Confidence 456778999999999999999996 688899999988877666555333 257889999998532 34555555554
Q ss_pred CChHHHHHHHHHhhhcCCCCCCCCCceEEEEEcCCCChHHHHHHHHHHHH
Q 017886 193 SSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLVEK 242 (364)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~kv~vvsQTT~~~~~~~~i~~~l~~ 242 (364)
....+++++ . ...+|||.+=+.=+....++++++|.+
T Consensus 415 ~~~~~~wl~------------~-~~~~VGITAGASTPd~lIeeVi~~l~~ 451 (460)
T PLN02821 415 LVEKENWLP------------E-GPVTIGVTSGASTPDKVVEDVLDKVFD 451 (460)
T ss_pred hhhhHHHhc------------c-CCCEEEEecCCCCCHHHHHHHHHHHHH
Confidence 433333332 1 125899999999999999999988875
No 27
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=75.37 E-value=12 Score=33.12 Aligned_cols=97 Identities=11% Similarity=0.021 Sum_probs=67.0
Q ss_pred HHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHHcCcEEecCCccccccccccCCCEEEEcCCCCCHHHHHHHHh---
Q 017886 41 RAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNN--- 117 (364)
Q Consensus 41 RAi~~a~~~~~~~~~~~vy~lG~iIHN~~Vv~~L~~~Gv~~v~~~~~~~~~~~l~~g~~VIIrAHGv~~~v~~~l~~--- 117 (364)
..-.+|..+++. +-+|+.+- .++.-.++|.+.|+...++ +.++-++.-|||.+---++++.+.+..
T Consensus 12 mG~~~a~~L~~~--g~~v~~~d---~~~~~~~~~~~~g~~~~~s------~~e~~~~~dvvi~~v~~~~~v~~v~~~~~i 80 (163)
T PF03446_consen 12 MGSAMARNLAKA--GYEVTVYD---RSPEKAEALAEAGAEVADS------PAEAAEQADVVILCVPDDDAVEAVLFGENI 80 (163)
T ss_dssp HHHHHHHHHHHT--TTEEEEEE---SSHHHHHHHHHTTEEEESS------HHHHHHHBSEEEE-SSSHHHHHHHHHCTTH
T ss_pred HHHHHHHHHHhc--CCeEEeec---cchhhhhhhHHhhhhhhhh------hhhHhhcccceEeecccchhhhhhhhhhHH
Confidence 344567776664 34677764 6789999999999999875 344433434667666666666665553
Q ss_pred -----cCCcEEeccCchhHHHHHHHHHHhhCCCeEE
Q 017886 118 -----KNVQIVDTTCPWVSKVWTSVEKHKKGDYTSI 148 (364)
Q Consensus 118 -----~g~~iiDaTCP~V~kv~~~v~~~~~~Gy~iI 148 (364)
.|-.+||.|=-.....++..+++.+.|...|
T Consensus 81 ~~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~v 116 (163)
T PF03446_consen 81 LAGLRPGKIIIDMSTISPETSRELAERLAAKGVRYV 116 (163)
T ss_dssp GGGS-TTEEEEE-SS--HHHHHHHHHHHHHTTEEEE
T ss_pred hhccccceEEEecCCcchhhhhhhhhhhhhccceee
Confidence 6889999999999999999999999995544
No 28
>PRK05752 uroporphyrinogen-III synthase; Validated
Probab=75.02 E-value=61 Score=30.64 Aligned_cols=116 Identities=11% Similarity=0.129 Sum_probs=69.8
Q ss_pred cccchHHHHHHHcCCcccccc-eEEEEeC-----------CCCCcccH---HHHHHHHHHHHhhCC----CCceEEeccc
Q 017886 4 EYTSDIIKKLKENGFEYTWGN-VKVKLAE-----------SYGFCWGV---ERAVQIAYEARKQFP----EEKIWITNEI 64 (364)
Q Consensus 4 ~y~~~~~~~~~~~~~~~~~~~-mkI~lA~-----------~~GFC~GV---~RAi~~a~~~~~~~~----~~~vy~lG~i 64 (364)
++.+.+.+.|++.|+....-. ++|.-.. -..|.+=| .+||+...+.+.+.. ..++|+.|+
T Consensus 13 ~~~~~l~~~l~~~G~~~~~~P~i~i~p~~~~~~~~~~l~~l~~~d~iifTS~naV~~~~~~l~~~~~~~~~~~~~aVG~- 91 (255)
T PRK05752 13 EECAALAASLAEAGIFSSSLPLLAIEPLPETPEQRALLLELDRYCAVIVVSKPAARLGLELLDRYWPQPPQQPWFSVGA- 91 (255)
T ss_pred HHHHHHHHHHHHcCCCEEEcCcEEEeeCCCCHHHHHHHhcCCCCCEEEEECHHHHHHHHHHHHhhCCCCcCCEEEEECH-
Confidence 445778899999987655543 3443211 12333322 566666655553321 247999995
Q ss_pred ccCHHHHHHHHHcCcEEecCCcc--ccc------cccc--cCC-CEEEEcCCCCCHHHHHHHHhcCCcEEe
Q 017886 65 IHNPTVNKRLEEMAVQNIPVEEG--KKQ------FDVV--NKG-DVVVLPAFGAAVEEMVTLNNKNVQIVD 124 (364)
Q Consensus 65 IHN~~Vv~~L~~~Gv~~v~~~~~--~~~------~~~l--~~g-~~VIIrAHGv~~~v~~~l~~~g~~iiD 124 (364)
..-+.|++.|+...--+++ -+. +... .+| .++++|+.+-.+...+.|+++|..|..
T Consensus 92 ----~Ta~al~~~G~~~~~~p~~~~se~Ll~~~~l~~~~~~~~~~vLi~rg~~~r~~L~~~L~~~G~~v~~ 158 (255)
T PRK05752 92 ----ATAAILQDYGLDVSYPEQGDDSEALLALPALRQALAVPDPRVLIMRGEGGRELLAERLREQGASVDY 158 (255)
T ss_pred ----HHHHHHHHcCCCcccCCCCCCcHHHHhChhhhccccCCCCEEEEEccCccHHHHHHHHHHCCCEEeE
Confidence 5668899999874321111 111 1111 134 467899999999999999999977633
No 29
>cd08191 HHD 6-hydroxyhexanoate dehydrogenase (HHD) catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. 6-hydroxyhexanoate dehydrogenase (HHD). The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. Some bacteria can grow on cyclic ketones, cyclohexylamine, and alcohols as sole carbon source. Cyclohexylamine is an insecticide and antiseptic in various industries and is considered a possible environmental pollutant. The degradation of these chemical compounds are through the cyclohexanol and cyclohexanone biological oxidation pathway. The intermediates of this pathway include cyclohexanol, cyclohexanone, e-caprolactone, 6-hydroxyhexanoate, 6-oxohexanoate and adipate. The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate.
Probab=74.46 E-value=16 Score=36.98 Aligned_cols=79 Identities=14% Similarity=0.161 Sum_probs=50.4
Q ss_pred ceEEEEEcCCCCh-HHHHHHHHHHHHHHhhhccccccccccccccccc-HHHHHHH-HHHHHhhhhCCCEEEEEcCCCCc
Q 017886 218 VKVGIANQTTMLK-GETEEIGKLVEKTMMRKFGVENVNEHFISFNTIC-DATQERQ-DAMYKMVEEKVDLILVVGGWNSS 294 (364)
Q Consensus 218 ~kv~vvsQTT~~~-~~~~~i~~~l~~~~~~~~~~~~~~~~~~v~nTIC-~AT~~RQ-~a~~eLa~~~vD~miVVGGknSS 294 (364)
+++.+|+...+.. ..++++.+.|++ .+.++.+|+.+| +.+..-- +.+..+.+.++|++|-|||=.+-
T Consensus 23 ~~~livt~~~~~~~~~~~~v~~~L~~----------~~~~~~~f~~v~~~~~~~~v~~~~~~~~~~~~D~IIaiGGGS~i 92 (386)
T cd08191 23 SRALIVTDERMAGTPVFAELVQALAA----------AGVEVEVFDGVLPDLPRSELCDAASAAARAGPDVIIGLGGGSCI 92 (386)
T ss_pred CeEEEEECcchhhcchHHHHHHHHHH----------cCCeEEEECCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCchHH
Confidence 4788888655543 556667666653 123456788888 2222212 22333333579999999999999
Q ss_pred hhHHHHHHHHhh
Q 017886 295 NTSHLQEIAEDR 306 (364)
Q Consensus 295 NT~rL~eia~~~ 306 (364)
.+-|..-+...+
T Consensus 93 D~aK~ia~~~~~ 104 (386)
T cd08191 93 DLAKIAGLLLAH 104 (386)
T ss_pred HHHHHHHHHHhC
Confidence 999988776543
No 30
>PF14542 Acetyltransf_CG: GCN5-related N-acetyl-transferase; PDB: 2H5M_A 2Q44_A 1XMT_A 2Q4Y_A 2IL4_A 2EVN_A 1R57_A.
Probab=73.93 E-value=3.7 Score=32.49 Aligned_cols=34 Identities=24% Similarity=0.453 Sum_probs=25.9
Q ss_pred EcCCCCCHH----HHHHHHhcCCcEEeccCchhHHHHHH
Q 017886 102 LPAFGAAVE----EMVTLNNKNVQIVDTTCPWVSKVWTS 136 (364)
Q Consensus 102 IrAHGv~~~----v~~~l~~~g~~iiDaTCP~V~kv~~~ 136 (364)
+|-+|+... ..+.++++|.+|+ .+||||.+--++
T Consensus 34 ~rGqGia~~L~~~~l~~a~~~~~kv~-p~C~y~~~~~~~ 71 (78)
T PF14542_consen 34 LRGQGIAKKLVEAALDYARENGLKVV-PTCSYVAKYFRR 71 (78)
T ss_dssp SSTTTHHHHHHHHHHHHHHHTT-EEE-ETSHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHHCCCEEE-EECHHHHHHHHh
Confidence 566788765 5677889999999 999999876543
No 31
>cd06319 PBP1_ABC_sugar_binding_like_10 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=73.77 E-value=35 Score=31.28 Aligned_cols=80 Identities=18% Similarity=0.141 Sum_probs=48.0
Q ss_pred ChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHHHHHHHhhhhCCCEEEEEcCCCCchhHHHHHHHHhhCC
Q 017886 229 LKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGI 308 (364)
Q Consensus 229 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ~a~~eLa~~~vD~miVVGGknSSNT~rL~eia~~~~~ 308 (364)
+-.-|..+.+-+.....+. +-++.++++.-+...++ +++..+....+|.+|+.+ ..|.....+++.+++.+.
T Consensus 10 ~~~~~~~~~~~i~~~~~~~------g~~~~~~~~~~~~~~~~-~~i~~~~~~~~dgiii~~-~~~~~~~~~l~~~~~~~i 81 (277)
T cd06319 10 RIPFWQIMGRGVKSKAKAL------GYDAVELSAENSAKKEL-ENLRTAIDKGVSGIIISP-TNSSAAVTLLKLAAQAKI 81 (277)
T ss_pred CchHHHHHHHHHHHHHHhc------CCeEEEecCCCCHHHHH-HHHHHHHhcCCCEEEEcC-CchhhhHHHHHHHHHCCC
Confidence 3455677777766543322 22455555554433332 455555446899998754 444445567788888899
Q ss_pred CeEEeCCC
Q 017886 309 PSYWIDSE 316 (364)
Q Consensus 309 ~t~~Ie~~ 316 (364)
|...++..
T Consensus 82 pvV~~~~~ 89 (277)
T cd06319 82 PVVIADIG 89 (277)
T ss_pred CEEEEecC
Confidence 99888753
No 32
>PRK11070 ssDNA exonuclease RecJ; Provisional
Probab=73.74 E-value=19 Score=39.02 Aligned_cols=107 Identities=15% Similarity=0.203 Sum_probs=74.9
Q ss_pred ccHHHHHHHHHHHHhhCCCCceEEecccc-----cCHHHHHHHHHcCcEEecCCccccccccccCCCEEEEcCCCCCHHH
Q 017886 37 WGVERAVQIAYEARKQFPEEKIWITNEII-----HNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEE 111 (364)
Q Consensus 37 ~GV~RAi~~a~~~~~~~~~~~vy~lG~iI-----HN~~Vv~~L~~~Gv~~v~~~~~~~~~~~l~~g~~VIIrAHGv~~~v 111 (364)
.+.++|++...+++++ +++|.++|+-= =---..+-|++.|...+.. -+|. + +---||++++.
T Consensus 53 ~~m~~a~~ri~~ai~~--~e~I~I~gDyD~DGitstail~~~L~~~g~~~~~~--------~IP~--R-~~eGYGl~~~~ 119 (575)
T PRK11070 53 SGIEKAVELLYNALRE--GTRIIVVGDFDADGATSTALSVLALRSLGCSNVDY--------LVPN--R-FEDGYGLSPEV 119 (575)
T ss_pred hCHHHHHHHHHHHHHC--CCEEEEEEecCccHHHHHHHHHHHHHHcCCCceEE--------EeCC--C-CcCCCCCCHHH
Confidence 5999999999999986 46899998731 1122466778888732210 0111 0 12248999999
Q ss_pred HHHHHhcCCcEEeccCchhHHHHHHHHHHhhCCCeEEEEecCCCce
Q 017886 112 MVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEE 157 (364)
Q Consensus 112 ~~~l~~~g~~iiDaTCP~V~kv~~~v~~~~~~Gy~iIIiG~~~HpE 157 (364)
.+.+.+.|..+| =||=--..-+..++.+.+.|..|||.-++..|+
T Consensus 120 i~~~~~~~~~Li-ItvD~Gi~~~e~i~~a~~~gidvIVtDHH~~~~ 164 (575)
T PRK11070 120 VDQAHARGAQLI-VTVDNGISSHAGVAHAHALGIPVLVTDHHLPGE 164 (575)
T ss_pred HHHHHhcCCCEE-EEEcCCcCCHHHHHHHHHCCCCEEEECCCCCCC
Confidence 999998887664 455555667888888888899999998876544
No 33
>cd04509 PBP1_ABC_transporter_GCPR_C_like Family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems. This CD includes members of the family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems. The family C GPCR includes glutamate/glycine-gated ion channels such as the NMDA receptor, G-protein-coupled receptors, metabotropic glutamate, GABA-B, calcium sensing, phermone receptors, and atrial natriuretic peptide-guanylate cyclase receptors. The glutamate receptors that form cation-selective ion channels, iGluR, can be classified into three different subgroups according to their binding-affinity for the agonists NMDA (N-methyl-D-asparate), AMPA (alpha-amino-3-dihydro-5-methyl-3-oxo-4-isoxazolepropionic acid), and kainate. L-glutamate is a major neurotransmitter in the brain of vertebrates and acts th
Probab=72.49 E-value=33 Score=31.04 Aligned_cols=59 Identities=19% Similarity=0.257 Sum_probs=43.0
Q ss_pred cccccccccHHHHHHHHHHHHhhhh-CCCEEEEEcCCCCchhHHHHHHHHhhCCCeEEeCCCC
Q 017886 256 HFISFNTICDATQERQDAMYKMVEE-KVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEK 317 (364)
Q Consensus 256 ~~~v~nTIC~AT~~RQ~a~~eLa~~-~vD~miVVGGknSSNT~rL~eia~~~~~~t~~Ie~~~ 317 (364)
++.+.|+-|+....+ +++++|... .+|+ |||+..|+++..+.+++...+.|.+.+.+..
T Consensus 42 ~~~~~d~~~~~~~~~-~~~~~l~~~~~v~~--iig~~~~~~~~~~~~~~~~~~iP~i~~~~~~ 101 (299)
T cd04509 42 ELVIYDDQSDPARAL-AAARRLCQQEGVDA--LVGPVSSGVALAVAPVAEALKIPLISPGATA 101 (299)
T ss_pred EEEEecCCCCHHHHH-HHHHHHhcccCceE--EEcCCCcHHHHHHHHHHhhCCceEEeccCCC
Confidence 456778878665555 455666633 4664 5788888888899999999999988877654
No 34
>PRK09453 phosphodiesterase; Provisional
Probab=72.36 E-value=28 Score=31.07 Aligned_cols=45 Identities=16% Similarity=0.105 Sum_probs=30.2
Q ss_pred HHHHHHHHHHhhCCCCceEEecccccC------------HHHHHHHHHcC--cEEecCC
Q 017886 41 RAVQIAYEARKQFPEEKIWITNEIIHN------------PTVNKRLEEMA--VQNIPVE 85 (364)
Q Consensus 41 RAi~~a~~~~~~~~~~~vy~lG~iIHN------------~~Vv~~L~~~G--v~~v~~~ 85 (364)
.|.+.+.+.+++.+...|+.+|+|++- +.+.+.|++.| +..|..+
T Consensus 14 ~~~~~~l~~~~~~~~d~ii~lGDi~~~~~~~~~~~~~~~~~~~~~l~~~~~~v~~V~GN 72 (182)
T PRK09453 14 PATEKALELFAQSGADWLVHLGDVLYHGPRNPLPEGYAPKKVAELLNAYADKIIAVRGN 72 (182)
T ss_pred HHHHHHHHHHHhcCCCEEEEcccccccCcCCCCccccCHHHHHHHHHhcCCceEEEccC
Confidence 455556555544334579999999962 45788898886 6666653
No 35
>cd06312 PBP1_ABC_sugar_binding_like_4 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=71.60 E-value=31 Score=31.80 Aligned_cols=91 Identities=11% Similarity=-0.052 Sum_probs=52.2
Q ss_pred eEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHHHHHHHhhhhCCCEEEEEcCCCCchhHH
Q 017886 219 KVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSH 298 (364)
Q Consensus 219 kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ~a~~eLa~~~vD~miVVGGknSSNT~r 298 (364)
||+++...+.+-.-|..+.+-+++...+. +-++.++++--+......+.++.|....+|.+|+.+...... ..
T Consensus 1 ~i~~i~~~~~~~~~~~~~~~g~~~~~~~~------g~~v~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~-~~ 73 (271)
T cd06312 1 KIAFVTHGPAGDPFWTVVKNGAEDAAKDL------GVDVEYRGPETFDVADMARLIEAAIAAKPDGIVVTIPDPDAL-DP 73 (271)
T ss_pred CEEEecCCCCCCcHHHHHHHHHHHHHHHh------CCEEEEECCCCCCHHHHHHHHHHHHHhCCCEEEEeCCChHHh-HH
Confidence 35666654423456777777776643332 223444444331222333555555556899999987532222 33
Q ss_pred HHHHHHhhCCCeEEeCCC
Q 017886 299 LQEIAEDRGIPSYWIDSE 316 (364)
Q Consensus 299 L~eia~~~~~~t~~Ie~~ 316 (364)
.++.+++.|.|...+++.
T Consensus 74 ~l~~~~~~~ipvV~~~~~ 91 (271)
T cd06312 74 AIKRAVAAGIPVISFNAG 91 (271)
T ss_pred HHHHHHHCCCeEEEeCCC
Confidence 455667788999999864
No 36
>TIGR00109 hemH ferrochelatase. Human ferrochelatase, found at the mitochondrial inner membrane inner surface, was shown in an active recombinant form to be a homodimer. This contrasts to an earlier finding by gel filtration that overexpressed E. coli ferrochelatase runs as a monomer.
Probab=71.49 E-value=39 Score=33.63 Aligned_cols=88 Identities=14% Similarity=0.126 Sum_probs=49.5
Q ss_pred cccHHHHHHHHHHHHhhCCC--CceEEecccccCHHHHHHHHHcCcEEecCCccccccccccC-C-CEEEEcCCCCCHHH
Q 017886 36 CWGVERAVQIAYEARKQFPE--EKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNK-G-DVVVLPAFGAAVEE 111 (364)
Q Consensus 36 C~GV~RAi~~a~~~~~~~~~--~~vy~lG~iIHN~~Vv~~L~~~Gv~~v~~~~~~~~~~~l~~-g-~~VIIrAHGv~~~v 111 (364)
++.+.-+.+.+.+++++.+. .++-+.-+-==+|..++.|.++--. .++..+. + ..|||+|||+|...
T Consensus 132 ~~t~gs~~~~~~~~l~~~~~~~~~~~~i~~~~~~p~yi~a~~~~I~~---------~l~~~~~~~~~~llfSaHglP~~~ 202 (322)
T TIGR00109 132 SSTTGSSFNELAEALKKLRSLRPTISVIESWYDNPKYIKALADSIKE---------TLASFPEPDNAVLLFSAHGLPQSY 202 (322)
T ss_pred cccHHHHHHHHHHHHHhcccCCCeEEEeCccccCcHHHHHHHHHHHH---------HHHhcCCcCCcEEEEeCCCCchhH
Confidence 45555566666666554321 1233333333455565555443211 1222222 2 37999999999887
Q ss_pred HHHHHhcCCcEEeccCchhHHHHHHHHHHhhC
Q 017886 112 MVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKG 143 (364)
Q Consensus 112 ~~~l~~~g~~iiDaTCP~V~kv~~~v~~~~~~ 143 (364)
.+. | .|+...+++.++.+.+.
T Consensus 203 ~~~----G-------d~Y~~~~~~ta~~l~~~ 223 (322)
T TIGR00109 203 VDE----G-------DPYPAECEATTRLIAEK 223 (322)
T ss_pred hhC----C-------CChHHHHHHHHHHHHHH
Confidence 654 3 57888888888877653
No 37
>PRK13600 putative ribosomal protein L7Ae-like; Provisional
Probab=71.26 E-value=6.5 Score=32.14 Aligned_cols=42 Identities=12% Similarity=0.288 Sum_probs=38.3
Q ss_pred hCCCEEEEEcCCCCchhHHHHHHHHhhCCCeEEeCCCCccCC
Q 017886 280 EKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGP 321 (364)
Q Consensus 280 ~~vD~miVVGGknSSNT~rL~eia~~~~~~t~~Ie~~~eL~~ 321 (364)
+++-++++-++-..-.+.+|-++|++.+.|..+|+|-.||-.
T Consensus 28 g~~~~v~iA~Da~~~vv~~l~~lceek~Ip~v~V~s~~~LGk 69 (84)
T PRK13600 28 DQVTSLIIAEDVEVYLMTRVLSQINQKNIPVSFFKSKHALGK 69 (84)
T ss_pred CCceEEEEeCCCCHHHHHHHHHHHHHcCCCEEEECCHHHHHH
Confidence 568899999999999999999999999999999999998854
No 38
>PRK05928 hemD uroporphyrinogen-III synthase; Reviewed
Probab=71.04 E-value=43 Score=30.55 Aligned_cols=115 Identities=16% Similarity=0.118 Sum_probs=70.7
Q ss_pred cccchHHHHHHHcCCcccccc-eEE-------------EEeCCCCCcccHHHHHHHHHHHHh-----hCCCCceEEeccc
Q 017886 4 EYTSDIIKKLKENGFEYTWGN-VKV-------------KLAESYGFCWGVERAVQIAYEARK-----QFPEEKIWITNEI 64 (364)
Q Consensus 4 ~y~~~~~~~~~~~~~~~~~~~-mkI-------------~lA~~~GFC~GV~RAi~~a~~~~~-----~~~~~~vy~lG~i 64 (364)
++...+.+.|++.|+....-. +++ .+....++.|==.+|++...+.++ ...+.++|+.|+=
T Consensus 11 ~~~~~l~~~l~~~G~~v~~~p~~~~~~~~~~~~~~~~~~~~~~d~iiftS~~av~~~~~~~~~~~~~~~~~~~~~avG~~ 90 (249)
T PRK05928 11 PKAEELVELLRELGFVALHFPLIEIEPGRQLPQLAAQLAALGADWVIFTSKNAVEFLLSALKKKKLKWPKNKKYAAIGEK 90 (249)
T ss_pred HHHHHHHHHHHHcCCCEEEeccEEEecCCCcChHHHHhhCCCCCEEEEECHHHHHHHHHHHHhcCcCCCCCCEEEEECHH
Confidence 445678899999987665543 232 223445666666777777666543 1223579999964
Q ss_pred ccCHHHHHHHHHcCcEEec--CCccc----cccccc-cCC-CEEEEcCCCCCHHHHHHHHhcCCcEE
Q 017886 65 IHNPTVNKRLEEMAVQNIP--VEEGK----KQFDVV-NKG-DVVVLPAFGAAVEEMVTLNNKNVQIV 123 (364)
Q Consensus 65 IHN~~Vv~~L~~~Gv~~v~--~~~~~----~~~~~l-~~g-~~VIIrAHGv~~~v~~~l~~~g~~ii 123 (364)
.-+.|++.|+...- ..... ..+.+. ..| .++++|+-+......+.|+++|..++
T Consensus 91 -----Ta~~l~~~G~~~~~~~~~~~~~~l~~~l~~~~~~~~~ili~~~~~~~~~l~~~L~~~G~~v~ 152 (249)
T PRK05928 91 -----TALALKKLGGKVVFVPEDGESSELLLELPELLLKGKRVLYLRGNGGREVLGDTLEERGAEVD 152 (249)
T ss_pred -----HHHHHHHcCCCccccCCCCcChHHHHhChhhhcCCCEEEEECCCCCHHHHHHHHHHCCCEEe
Confidence 55899999987542 11110 011111 124 34567777777788899999998764
No 39
>cd06308 PBP1_sensor_kinase_like Periplasmic binding domain of two-component sensor kinase signaling systems. Periplasmic binding domain of two-component sensor kinase signaling systems, some of which are fused with a C-terminal histidine kinase A domain (HisK) and/or a signal receiver domain (REC). Members of this group share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily and are predicted to be involved in sensing of environmental stimuli; their substrate specificities, however, are not known in detail.
Probab=70.43 E-value=43 Score=30.76 Aligned_cols=89 Identities=13% Similarity=0.240 Sum_probs=48.8
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHHHHHHHhhhhCCCEEEEEcCCCCchhHHH
Q 017886 220 VGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHL 299 (364)
Q Consensus 220 v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ~a~~eLa~~~vD~miVVGGknSSNT~rL 299 (364)
|+++.-+ ++-.-|..+...+.+...+.. +-.+.++++ .+....-.+.+..+....+|.+|+.+...+. ...+
T Consensus 2 ig~~~~~-~~~~~~~~~~~~i~~~~~~~~-----g~~~~~~~~-~~~~~~~~~~i~~~~~~~vdgiii~~~~~~~-~~~~ 73 (270)
T cd06308 2 IGFSQCN-LADPWRAAMNDEIQREASNYP-----DVELIIADA-ADDNSKQVADIENFIRQGVDLLIISPNEAAP-LTPV 73 (270)
T ss_pred EEEEeeC-CCCHHHHHHHHHHHHHHHhcC-----CcEEEEEcC-CCCHHHHHHHHHHHHHhCCCEEEEecCchhh-chHH
Confidence 5555543 444556777777765333211 122334333 2222222344555544689999988654332 2345
Q ss_pred HHHHHhhCCCeEEeCCC
Q 017886 300 QEIAEDRGIPSYWIDSE 316 (364)
Q Consensus 300 ~eia~~~~~~t~~Ie~~ 316 (364)
.+.+.+.+.|.+.+++.
T Consensus 74 ~~~~~~~~ipvV~~~~~ 90 (270)
T cd06308 74 VEEAYRAGIPVILLDRK 90 (270)
T ss_pred HHHHHHCCCCEEEeCCC
Confidence 55566788999999863
No 40
>cd06342 PBP1_ABC_LIVBP_like Type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup includes the type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup also includes a leucine-specific binding protein (or LivK), which is very similar in sequence and structure to leucine-isoleucine-valine binding protein (LIVBP). ABC-type active transport systems are transmembrane proteins that function in the transport of diverse sets of substrates across extra- and intracellular membranes, including carbohydrates, amino acids, inorganic ions, dipeptides and oligopeptides, metabolic products, lipids and sterols, and heme, to name a few.
Probab=70.21 E-value=7.6 Score=36.90 Aligned_cols=59 Identities=24% Similarity=0.205 Sum_probs=46.7
Q ss_pred ccccccccccHHHHHHHHHHHHhhhhCCCEEEEEcCCCCchhHHHHHHHHhhCCCeEEeCCC
Q 017886 255 EHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSE 316 (364)
Q Consensus 255 ~~~~v~nTIC~AT~~RQ~a~~eLa~~~vD~miVVGGknSSNT~rL~eia~~~~~~t~~Ie~~ 316 (364)
-++.+.|+-|.....+ +++++|. .+ ++..|+|+..|+.+..+..++++.+.|.+..-..
T Consensus 41 i~~~~~D~~~~~~~~~-~~~~~li-~~-~v~aiiG~~~s~~~~~~~~~~~~~~ip~i~~~~~ 99 (334)
T cd06342 41 LELVVEDDQADPKQAV-AVAQKLV-DD-GVVGVVGHLNSGVTIPASPIYADAGIVMISPAAT 99 (334)
T ss_pred EEEEEecCCCChHHHH-HHHHHHH-hC-CceEEECCCccHhHHHhHHHHHhCCCeEEecCCC
Confidence 3567889999887664 6667777 45 7888999999999999999999998887665443
No 41
>PRK14072 6-phosphofructokinase; Provisional
Probab=68.92 E-value=7.8 Score=40.20 Aligned_cols=47 Identities=19% Similarity=0.290 Sum_probs=37.3
Q ss_pred HHHHHHHHHHhhhhCCCEEEEEcCCCCchhH-HHHHHHHhhC--CCeEEe
Q 017886 267 TQERQDAMYKMVEEKVDLILVVGGWNSSNTS-HLQEIAEDRG--IPSYWI 313 (364)
Q Consensus 267 T~~RQ~a~~eLa~~~vD~miVVGGknSSNT~-rL~eia~~~~--~~t~~I 313 (364)
...+++++..|-+-.+|++|||||-.|-.+. +|.|.+++.| .+...|
T Consensus 89 ~~~~~~~~~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~g~~i~vIgI 138 (416)
T PRK14072 89 RAEYERLLEVFKAHDIGYFFYNGGNDSMDTALKVSQLAKKMGYPIRCIGI 138 (416)
T ss_pred hHHHHHHHHHHHHcCCCEEEEECChHHHHHHHHHHHHHHHhCCCceEEEe
Confidence 4567777777766789999999999998665 8999988887 555554
No 42
>cd06349 PBP1_ABC_ligand_binding_like_14 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=68.70 E-value=8.8 Score=36.98 Aligned_cols=56 Identities=16% Similarity=0.197 Sum_probs=43.6
Q ss_pred ccccccccccHHHHHHHHHHHHhhhhCCCEEEEEcCCCCchhHHHHHHHHhhCCCeEE
Q 017886 255 EHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYW 312 (364)
Q Consensus 255 ~~~~v~nTIC~AT~~RQ~a~~eLa~~~vD~miVVGGknSSNT~rL~eia~~~~~~t~~ 312 (364)
-++.+.||=|.++.-++ ++++|. .+-.+.+++|+..|+.+.-+..++++.+.|.+-
T Consensus 41 i~l~~~D~~~~~~~a~~-~a~~li-~~~~V~~i~G~~~s~~~~a~~~~~~~~~vp~i~ 96 (340)
T cd06349 41 LNIVFEDSKSDPRQAVT-IAQKFV-ADPRIVAVLGDFSSGVSMAASPIYQRAGLVQLS 96 (340)
T ss_pred EEEEEeCCCCChHHHHH-HHHHHh-ccCCeEEEECCCccHhHHHhHHHHHhCCCeEEe
Confidence 35678899998888874 455665 344567888999999999999999999888654
No 43
>cd06301 PBP1_rhizopine_binding_like Periplasmic binding proteins specific to rhizopines. Periplasmic binding proteins specific to rhizopines, which are simple sugar-like compounds produced in the nodules induced by the symbiotic root nodule bacteria, such as Rhizobium and Sinorhizobium. Rhizopine-binding-like proteins from other bacteria are also included. Two inositol based rhizopine compounds are known to date: L-3-O-methly-scyllo-inosamine (3-O-MSI) and scyllo-inosamine. Bacterial strains that can metabolize rhizopine have a greater competitive advantage in nodulation and rhizopine synthesis is regulated by NifA/NtrA regulatory transcription activators which are maximally expressed at the onset of nitrogen fixation in bacteroids. The members of this group belong to the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily.
Probab=67.74 E-value=41 Score=30.75 Aligned_cols=89 Identities=15% Similarity=0.197 Sum_probs=52.3
Q ss_pred eEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHH-HHHHHhhhhCCCEEEEEcCCCCchhH
Q 017886 219 KVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSNTS 297 (364)
Q Consensus 219 kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ-~a~~eLa~~~vD~miVVGGknSSNT~ 297 (364)
||+++... .+-.-|..+.+-+.+...+.. +-++.+.++ .....+| +.++++....+|.+|+.+. .++.+.
T Consensus 1 ~igvi~~~-~~~~~~~~~~~gi~~~~~~~~-----~~~~~~~~~--~~~~~~~~~~i~~l~~~~vdgiii~~~-~~~~~~ 71 (272)
T cd06301 1 KIGVSMAN-FDDNFLTLLRNAMKEHAKVLG-----GVELQFEDA--KNDVATQLSQVENFIAQGVDAIIVVPV-DTAATA 71 (272)
T ss_pred CeeEeecc-cCCHHHHHHHHHHHHHHHHcC-----CcEEEEeCC--CCCHHHHHHHHHHHHHcCCCEEEEecC-chhhhH
Confidence 35566544 344567777776665433311 123444433 2223344 4555655468999998764 455556
Q ss_pred HHHHHHHhhCCCeEEeCCC
Q 017886 298 HLQEIAEDRGIPSYWIDSE 316 (364)
Q Consensus 298 rL~eia~~~~~~t~~Ie~~ 316 (364)
.+++.+.+.+.|...+.+.
T Consensus 72 ~~~~~l~~~~iPvv~~~~~ 90 (272)
T cd06301 72 PIVKAANAAGIPLVYVNRR 90 (272)
T ss_pred HHHHHHHHCCCeEEEecCC
Confidence 6777778889999988764
No 44
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=67.48 E-value=15 Score=29.84 Aligned_cols=51 Identities=24% Similarity=0.376 Sum_probs=39.1
Q ss_pred cHHHHHHHHH--HHHhhhhCCCEEEEEcCCCCchh-HHHHHHHHhhCCCeEEeCC
Q 017886 264 CDATQERQDA--MYKMVEEKVDLILVVGGWNSSNT-SHLQEIAEDRGIPSYWIDS 315 (364)
Q Consensus 264 C~AT~~RQ~a--~~eLa~~~vD~miVVGGknSSNT-~rL~eia~~~~~~t~~Ie~ 315 (364)
+.....++.+ +.... +++|++||+=+..|=|+ ++.-+.|++.+.|.++..+
T Consensus 30 g~~~~~~~~~~~l~~~i-~~aD~VIv~t~~vsH~~~~~vk~~akk~~ip~~~~~~ 83 (97)
T PF10087_consen 30 GRDGGDEKKASRLPSKI-KKADLVIVFTDYVSHNAMWKVKKAAKKYGIPIIYSRS 83 (97)
T ss_pred ecCCCCccchhHHHHhc-CCCCEEEEEeCCcChHHHHHHHHHHHHcCCcEEEECC
Confidence 3344444554 77666 57899999999999995 5677899999999988864
No 45
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=67.16 E-value=1.2e+02 Score=29.12 Aligned_cols=42 Identities=12% Similarity=-0.013 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHHcCcEEec
Q 017886 39 VERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIP 83 (364)
Q Consensus 39 V~RAi~~a~~~~~~~~~~~vy~lG~iIHN~~Vv~~L~~~Gv~~v~ 83 (364)
|-|.+.+|++..+.+ ..|+.+..= +.....+.|++.|..+..
T Consensus 17 v~Rcl~LA~~l~~~g--~~v~f~~~~-~~~~~~~~i~~~g~~v~~ 58 (279)
T TIGR03590 17 VMRCLTLARALHAQG--AEVAFACKP-LPGDLIDLLLSAGFPVYE 58 (279)
T ss_pred HHHHHHHHHHHHHCC--CEEEEEeCC-CCHHHHHHHHHcCCeEEE
Confidence 789999998886542 344433222 345557889999987653
No 46
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational
Probab=65.18 E-value=69 Score=29.12 Aligned_cols=85 Identities=18% Similarity=0.202 Sum_probs=47.8
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHH-HHHHHhhhhCCCEEEEEcCCCCchhHH
Q 017886 220 VGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSNTSH 298 (364)
Q Consensus 220 v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ-~a~~eLa~~~vD~miVVGGknSSNT~r 298 (364)
|+++.-. .+-.-|..+..-+.+...+. +-.+.++++=.. ..+| +.++.|.+..+|.+|++|...+. .
T Consensus 2 i~vv~p~-~~~~~~~~~~~~i~~~~~~~------g~~~~~~~~~~~--~~~~~~~~~~l~~~~vdgiii~~~~~~~---~ 69 (268)
T cd06273 2 IGAIVPT-LDNAIFARVIQAFQETLAAH------GYTLLVASSGYD--LDREYAQARKLLERGVDGLALIGLDHSP---A 69 (268)
T ss_pred eEEEeCC-CCCchHHHHHHHHHHHHHHC------CCEEEEecCCCC--HHHHHHHHHHHHhcCCCEEEEeCCCCCH---H
Confidence 3455433 23344666666665543322 223344433222 2444 34455655679999999765443 4
Q ss_pred HHHHHHhhCCCeEEeCCC
Q 017886 299 LQEIAEDRGIPSYWIDSE 316 (364)
Q Consensus 299 L~eia~~~~~~t~~Ie~~ 316 (364)
+++.+++.+.|.+.+.+.
T Consensus 70 ~~~~l~~~~iPvv~~~~~ 87 (268)
T cd06273 70 LLDLLARRGVPYVATWNY 87 (268)
T ss_pred HHHHHHhCCCCEEEEcCC
Confidence 445667788999998764
No 47
>cd06331 PBP1_AmiC_like Type I periplasmic components of amide-binding protein (AmiC) and the active transport system for short-chain and urea (FmdDEF). This group includes the type I periplasmic components of amide-binding protein (AmiC) and the active transport system for short-chain and urea (FmdDEF), found in bacteria and Archaea. AmiC controls expression of the amidase operon by a ligand-triggered conformational switch. In the absence of ligand or presence of butyramide (repressor), AmiC (the ligand sensor and negative regulator) adopts an open conformation and inhibits the transcription antitermination function of AmiR by direct protein-protein interaction. In the presence of inducing ligands such as acetamide, AmiC adopts a closed conformation which disrupts a silencing AmiC-AmiR complex and the expression of amidase and other genes of the operon is induced. FmdDEF is predicted to be an ATP-dependent transporter and closely resembles the periplasmic binding protein and the two t
Probab=65.00 E-value=8.6 Score=37.01 Aligned_cols=56 Identities=11% Similarity=0.166 Sum_probs=44.6
Q ss_pred ccccccccccHHHHHHHHHHHHhhhhCCCEEEEEcCCCCchhHHHHHHHHhhCCCeEE
Q 017886 255 EHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYW 312 (364)
Q Consensus 255 ~~~~v~nTIC~AT~~RQ~a~~eLa~~~vD~miVVGGknSSNT~rL~eia~~~~~~t~~ 312 (364)
-++.+.||=|++..-.+ ++++|. .+-.+..|+|+..|+.+..+..++.+.+.|.+.
T Consensus 41 i~l~~~D~~~~p~~a~~-~a~~Li-~~~~V~aiiG~~~s~~~~a~~~~~~~~~vp~i~ 96 (333)
T cd06331 41 LELVVEDPASDPAFAAK-AARRLI-RDDKVDAVFGCYTSASRKAVLPVVERGRGLLFY 96 (333)
T ss_pred EEEEEECCCCCHHHHHH-HHHHHH-hccCCcEEEecccHHHHHHHHHHHHhcCceEEe
Confidence 35678899998766664 668887 344688889999999999999999998877654
No 48
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=64.90 E-value=15 Score=35.31 Aligned_cols=93 Identities=20% Similarity=0.283 Sum_probs=51.9
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHHHHHHHhhhhCCCEEEEEcCCCCchhH
Q 017886 218 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTS 297 (364)
Q Consensus 218 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ~a~~eLa~~~vD~miVVGGknSSNT~ 297 (364)
++|++++=.+.. ++++..++..++.|.+. +- ++...++. .+.+..|. .+|+++|-|| ||.
T Consensus 32 ~~v~fIPtAs~~-~~~~~y~~~~~~af~~l-G~-----~v~~l~~~-------~d~~~~l~--~ad~I~v~GG----nt~ 91 (233)
T PRK05282 32 RKAVFIPYAGVT-QSWDDYTAKVAEALAPL-GI-----EVTGIHRV-------ADPVAAIE--NAEAIFVGGG----NTF 91 (233)
T ss_pred CeEEEECCCCCC-CCHHHHHHHHHHHHHHC-CC-----EEEEeccc-------hhhHHHHh--cCCEEEECCc----cHH
Confidence 489998866643 34444444455544443 21 12222221 22344454 6897777665 788
Q ss_pred HHHHHHHhhCCCeEEeCCCCccCCCCcchhhhccchhhhhcccCCCCCCEEEEEeCCC
Q 017886 298 HLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPKGQITIGITSGAS 355 (364)
Q Consensus 298 rL~eia~~~~~~t~~Ie~~~eL~~~~~~~~~~~~~~~~~~~~wl~~~~~~VGITAGAS 355 (364)
+|.++-++.+.... |. +.+.+|...+|.+|||.
T Consensus 92 ~l~~~l~~~gl~~~-------l~------------------~~~~~G~~~~G~SAGAi 124 (233)
T PRK05282 92 QLLKQLYERGLLAP-------IR------------------EAVKNGTPYIGWSAGAN 124 (233)
T ss_pred HHHHHHHHCCcHHH-------HH------------------HHHHCCCEEEEECHHHH
Confidence 88888877752110 11 22225777899999984
No 49
>cd06318 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=64.46 E-value=69 Score=29.44 Aligned_cols=87 Identities=14% Similarity=0.182 Sum_probs=50.1
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHH-HHHHHhhhhCCCEEEEEcCCCCchhHH
Q 017886 220 VGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSNTSH 298 (364)
Q Consensus 220 v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ-~a~~eLa~~~vD~miVVGGknSSNT~r 298 (364)
|+++.- +++-.-|..+..-+.+...+. + -++.+.+ |......| +.+..+....+|.+|+.+.. ++....
T Consensus 2 igv~~~-~~~~~~~~~~~~~i~~~~~~~-g-----~~v~~~~--~~~~~~~~~~~i~~~~~~~~Dgiii~~~~-~~~~~~ 71 (282)
T cd06318 2 IGFSQY-TLNSPFFAALTEAAKAHAKAL-G-----YELISTD--AQGDLTKQIADVEDLLTRGVNVLIINPVD-PEGLVP 71 (282)
T ss_pred eeEEec-cccCHHHHHHHHHHHHHHHHc-C-----CEEEEEc--CCCCHHHHHHHHHHHHHcCCCEEEEecCC-ccchHH
Confidence 455442 345566777777776643322 2 2233332 22222333 45566655789999986543 333345
Q ss_pred HHHHHHhhCCCeEEeCCC
Q 017886 299 LQEIAEDRGIPSYWIDSE 316 (364)
Q Consensus 299 L~eia~~~~~~t~~Ie~~ 316 (364)
+++.+++.|.|...+++.
T Consensus 72 ~i~~~~~~~iPvV~~~~~ 89 (282)
T cd06318 72 AVAAAKAAGVPVVVVDSS 89 (282)
T ss_pred HHHHHHHCCCCEEEecCC
Confidence 667777889999888863
No 50
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=63.76 E-value=13 Score=33.72 Aligned_cols=43 Identities=14% Similarity=0.050 Sum_probs=31.5
Q ss_pred HHHHHHHHhcCCcE-EeccCchhHHHHHHHHHHhhCCCeEEEEe
Q 017886 109 VEEMVTLNNKNVQI-VDTTCPWVSKVWTSVEKHKKGDYTSIIHG 151 (364)
Q Consensus 109 ~~v~~~l~~~g~~i-iDaTCP~V~kv~~~v~~~~~~Gy~iIIiG 151 (364)
...++.+.+++..| +|+|+..-....+.++.+.+.||+|.|+-
T Consensus 83 ~~~~~~a~~~~~nii~E~tl~~~~~~~~~~~~~k~~GY~v~l~~ 126 (199)
T PF06414_consen 83 EKLIEYAIENRYNIIFEGTLSNPSKLRKLIREAKAAGYKVELYY 126 (199)
T ss_dssp HHHHHHHHHCT--EEEE--TTSSHHHHHHHHHHHCTT-EEEEEE
T ss_pred HHHHHHHHHcCCCEEEecCCCChhHHHHHHHHHHcCCceEEEEE
Confidence 34566777767655 89999999999999999999999998875
No 51
>cd06344 PBP1_ABC_ligand_binding_like_9 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine/isoleucine/valine binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=63.28 E-value=12 Score=35.96 Aligned_cols=57 Identities=16% Similarity=0.130 Sum_probs=44.5
Q ss_pred ccccccccccHHHHHHHHHHHHhhhhCCCEEEEEcCCCCchhHHHHHHHHhhCCCeEEe
Q 017886 255 EHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWI 313 (364)
Q Consensus 255 ~~~~v~nTIC~AT~~RQ~a~~eLa~~~vD~miVVGGknSSNT~rL~eia~~~~~~t~~I 313 (364)
-++.+.||=|+...-+ .++++|. .+=.+..|+|+..|+++.....++.+.+.|.+..
T Consensus 40 ielv~~D~~~~p~~a~-~~a~~li-~~~~v~aiiG~~~s~~~~a~~~~~~~~~ip~i~~ 96 (332)
T cd06344 40 LKVVIANDGNDPEIAK-KVADELV-KDPEILGVVGHYSSDATLAALDIYQKAKLVLISP 96 (332)
T ss_pred EEEEEECCCCChHHHH-HHHHHHh-cccCceEEEcCCCcHHHHHHHHHHhhcCceEEcc
Confidence 3677889999887666 4678887 3445778889999999999999999988776543
No 52
>PF02896 PEP-utilizers_C: PEP-utilising enzyme, TIM barrel domain; InterPro: IPR000121 A number of enzymes that catalyze the transfer of a phosphoryl group from phosphoenolpyruvate (PEP) via a phospho-histidine intermediate have been shown to be structurally related [, , , ]. All these enzymes share the same catalytic mechanism: they bind PEP and transfer the phosphoryl group from it to a histidine residue. The sequence around that residue is highly conserved. This domain is often found associated with the pyruvate phosphate dikinase, PEP/pyruvate-binding domain (IPR002192 from INTERPRO) at its N terminus and the PEP-utilizing enzyme mobile domain.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016310 phosphorylation; PDB: 2HRO_A 2OLS_A 2DIK_A 2R82_A 1JDE_A 1DIK_A 1GGO_A 1KBL_A 1KC7_A 2BG5_B ....
Probab=62.93 E-value=13 Score=36.91 Aligned_cols=51 Identities=12% Similarity=0.163 Sum_probs=42.6
Q ss_pred CCCCcccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHHcCcEEec
Q 017886 32 SYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIP 83 (364)
Q Consensus 32 ~~GFC~GV~RAi~~a~~~~~~~~~~~vy~lG~iIHN~~Vv~~L~~~Gv~~v~ 83 (364)
...|-..|.|+|+.+-++.++. +.+|.+.|++.+||..+..|-.+||..+.
T Consensus 226 ~d~~~Pavl~li~~vi~~a~~~-g~~vsvCGe~a~~p~~~~~Ll~lGi~~lS 276 (293)
T PF02896_consen 226 YDPLHPAVLRLIKQVIDAAHKA-GKPVSVCGEMASDPEAIPLLLGLGIRSLS 276 (293)
T ss_dssp S-TTSHHHHHHHHHHHHHHHHT-T-EEEEESGGGGSHHHHHHHHHHT-SEEE
T ss_pred cCcchHHHHHHHHHHHHHHhhc-CcEEEEecCCCCCHHHHHHHHHcCCCEEE
Confidence 3456678999999998888875 47999999999999999999999998876
No 53
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=62.60 E-value=1.1e+02 Score=29.37 Aligned_cols=127 Identities=19% Similarity=0.208 Sum_probs=70.7
Q ss_pred eEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHHHHHHHhhhhCCCEEEEEcCCCCchhHH
Q 017886 219 KVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSH 298 (364)
Q Consensus 219 kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ~a~~eLa~~~vD~miVVGGknSSNT~r 298 (364)
.||+|-=.. +-.-|.+++..+.+...+. +-.+...+|=-+...+ +.++.|.+.+||.+|+.+-.++ ...
T Consensus 3 ~IGvivp~~-~npff~~ii~gIe~~a~~~------Gy~l~l~~t~~~~~~e--~~i~~l~~~~vDGiI~~s~~~~--~~~ 71 (279)
T PF00532_consen 3 TIGVIVPDI-SNPFFAEIIRGIEQEAREH------GYQLLLCNTGDDEEKE--EYIELLLQRRVDGIILASSEND--DEE 71 (279)
T ss_dssp EEEEEESSS-TSHHHHHHHHHHHHHHHHT------TCEEEEEEETTTHHHH--HHHHHHHHTTSSEEEEESSSCT--CHH
T ss_pred EEEEEECCC-CCcHHHHHHHHHHHHHHHc------CCEEEEecCCCchHHH--HHHHHHHhcCCCEEEEecccCC--hHH
Confidence 455444322 3344788888887643322 1234444444443333 7777787789999999955444 567
Q ss_pred HHHHHHhhCCCeEEeCCCCccC-CCCcchhhh-ccchhhhhcccCCCCCCE-EEEEeCCCCCH
Q 017886 299 LQEIAEDRGIPSYWIDSEKRIG-PGNKIAYKL-MHGELVEKENWLPKGQIT-IGITSGASTPD 358 (364)
Q Consensus 299 L~eia~~~~~~t~~Ie~~~eL~-~~~~~~~~~-~~~~~~~~~~wl~~~~~~-VGITAGASTP~ 358 (364)
|..+.+. +.|..+++...+-+ .-+.+.... ..+.. -.+..+..|.++ |++.+|...-.
T Consensus 72 l~~~~~~-~iPvV~~~~~~~~~~~~~~V~~D~~~a~~~-a~~~Li~~Gh~~~I~~i~~~~~~~ 132 (279)
T PF00532_consen 72 LRRLIKS-GIPVVLIDRYIDNPEGVPSVYIDNYEAGYE-ATEYLIKKGHRRPIAFIGGPEDSS 132 (279)
T ss_dssp HHHHHHT-TSEEEEESS-SCTTCTSCEEEEEHHHHHHH-HHHHHHHTTCCSTEEEEEESTTTH
T ss_pred HHHHHHc-CCCEEEEEeccCCcccCCEEEEcchHHHHH-HHHHHHhcccCCeEEEEecCcchH
Confidence 7777766 88999999985444 211111111 11111 111112258889 99988865443
No 54
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=61.23 E-value=66 Score=28.50 Aligned_cols=23 Identities=17% Similarity=0.391 Sum_probs=16.6
Q ss_pred ccCCCEE-EEcCCCCCHHHHHHHH
Q 017886 94 VNKGDVV-VLPAFGAAVEEMVTLN 116 (364)
Q Consensus 94 l~~g~~V-IIrAHGv~~~v~~~l~ 116 (364)
+.++|.+ +|+-.|-++++.+.++
T Consensus 70 ~~~~Dv~I~iS~sG~t~~~i~~~~ 93 (179)
T TIGR03127 70 IKKGDLLIAISGSGETESLVTVAK 93 (179)
T ss_pred CCCCCEEEEEeCCCCcHHHHHHHH
Confidence 4456764 6888899999877653
No 55
>cd06335 PBP1_ABC_ligand_binding_like_2 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=60.97 E-value=15 Score=35.82 Aligned_cols=56 Identities=11% Similarity=0.159 Sum_probs=44.6
Q ss_pred ccccccccccHHHHHHHHHHHHhhhhCCCEEEEEcCCCCchhHHHHHHHHhhCCCeEE
Q 017886 255 EHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYW 312 (364)
Q Consensus 255 ~~~~v~nTIC~AT~~RQ~a~~eLa~~~vD~miVVGGknSSNT~rL~eia~~~~~~t~~ 312 (364)
-++.+.|+-+..+.-+ +++++|. .+-.+..|+|+..|+++..+..++++.+.|.+.
T Consensus 41 i~lv~~D~~~~p~~a~-~~a~~Li-~~~~V~aiiG~~~s~~~~a~~~~~~~~~vp~i~ 96 (347)
T cd06335 41 LELVERDDRGNPARGL-QNAQELA-ADEKVVAVLGGLHTPVALANLEFIQQNKIPLIG 96 (347)
T ss_pred EEEEeccCCCCcHHHH-HHHHHHh-ccCCeEEEEcCCCCHHHHhhhHHHHhcCCcEEe
Confidence 3667889988877776 4567776 444578888999999999999999999888764
No 56
>PRK10444 UMP phosphatase; Provisional
Probab=60.64 E-value=78 Score=30.21 Aligned_cols=30 Identities=10% Similarity=0.109 Sum_probs=22.4
Q ss_pred HhhCCCCceEEecccccCHHHHHHHHHcCcEEec
Q 017886 50 RKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIP 83 (364)
Q Consensus 50 ~~~~~~~~vy~lG~iIHN~~Vv~~L~~~Gv~~v~ 83 (364)
+++.++.++|++|+ +...+.|++.|+...+
T Consensus 77 L~~~~~~~v~~~g~----~~l~~~l~~~g~~~~~ 106 (248)
T PRK10444 77 LRRQEGKKAYVIGE----GALIHELYKAGFTITD 106 (248)
T ss_pred HHhCCCCEEEEEcC----HHHHHHHHHCcCEecC
Confidence 33333457999998 7889999999988553
No 57
>PRK09189 uroporphyrinogen-III synthase; Validated
Probab=60.21 E-value=45 Score=31.10 Aligned_cols=121 Identities=11% Similarity=0.020 Sum_probs=70.7
Q ss_pred cccchHHHHHHHcCCcccccc-eEEE---------EeC-CCCCcccHHHHHHHHHHH---HhhCCCCceEEecccccCHH
Q 017886 4 EYTSDIIKKLKENGFEYTWGN-VKVK---------LAE-SYGFCWGVERAVQIAYEA---RKQFPEEKIWITNEIIHNPT 69 (364)
Q Consensus 4 ~y~~~~~~~~~~~~~~~~~~~-mkI~---------lA~-~~GFC~GV~RAi~~a~~~---~~~~~~~~vy~lG~iIHN~~ 69 (364)
++...+.+.|++.|+....-. ++|. +.. ..+..|==.+||+...+. .....+.++|+.|+=
T Consensus 10 ~~~~~l~~~L~~~G~~~~~~P~i~i~~~~~~~~~~l~~~~d~iifTS~naV~~~~~~~~~~~~~~~~~~~aVG~~----- 84 (240)
T PRK09189 10 PAAERTAARLRAMGHEPVLLPLSRPVHDVAAAFTALSEPHGAIAVTSAEAVRHLAALGERLLPHLALPLFAVGEA----- 84 (240)
T ss_pred CchHHHHHHHHHCCCceEEecccccccChhhhhhhhcCCcCEEEEECHHHHHHHHhcchhhHHhcCCeEEEEcHH-----
Confidence 455678889999986655532 2221 111 112233336677665432 111123579999964
Q ss_pred HHHHHHHcCcEEecCCc-cccccc-----cc-cCCCEEEEcCCCCCHHHHHHHHhcCCcE-----EeccCch
Q 017886 70 VNKRLEEMAVQNIPVEE-GKKQFD-----VV-NKGDVVVLPAFGAAVEEMVTLNNKNVQI-----VDTTCPW 129 (364)
Q Consensus 70 Vv~~L~~~Gv~~v~~~~-~~~~~~-----~l-~~g~~VIIrAHGv~~~v~~~l~~~g~~i-----iDaTCP~ 129 (364)
.-+.|++.|+..+-..+ ..+.|- .. +.+.++++|+-+-.+...+.|+++|+.| +++.||-
T Consensus 85 Ta~~l~~~G~~~~~~~~~~~e~L~~~~~~~~~~~~~vL~~rg~~~r~~l~~~L~~~G~~v~~~~vY~~~~~~ 156 (240)
T PRK09189 85 TAEAARELGFRHVIEGGGDGVRLAETVAAALAPTARLLYLAGRPRAPVFEDRLAAAGIPFRVAECYDMLPVM 156 (240)
T ss_pred HHHHHHHcCCCCCcCCCCCHHHHHHHHHHhcCCCCcEEEeccCcccchhHHHHHhCCCeeEEEEEEEeecCC
Confidence 55889999987332111 111111 11 2245678999999999999999999765 6655553
No 58
>cd06323 PBP1_ribose_binding Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Members of this group are belonging to the type I periplasmic binding protein superfamily, whose members are involved in chemotaxis, ATP-binding cassette transport, and intercellular communication in central nervous system. The thermophilic and mesophilic ribose-binding proteins are structurally very similar, but differ substantially in thermal stability.
Probab=60.02 E-value=79 Score=28.58 Aligned_cols=81 Identities=16% Similarity=0.215 Sum_probs=46.3
Q ss_pred CChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHH-HHHHHhhhhCCCEEEEEcCCCCchhHHHHHHHHhh
Q 017886 228 MLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDR 306 (364)
Q Consensus 228 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ-~a~~eLa~~~vD~miVVGGknSSNT~rL~eia~~~ 306 (364)
++-.-|.++.+.+.+...+. +-.+.+.++ ....+++ +.++++.+.++|.+|+. +.+++.+..+++.+++.
T Consensus 9 ~~~~~~~~~~~~i~~~~~~~------g~~v~~~~~--~~~~~~~~~~~~~~~~~~~dgii~~-~~~~~~~~~~l~~l~~~ 79 (268)
T cd06323 9 LNNPFFVTLKDGAQKEAKEL------GYELTVLDA--QNDAAKQLNDIEDLITRGVDAIIIN-PTDSDAVVPAVKAANEA 79 (268)
T ss_pred ccCHHHHHHHHHHHHHHHHc------CceEEecCC--CCCHHHHHHHHHHHHHcCCCEEEEc-CCChHHHHHHHHHHHHC
Confidence 44555677776666533322 122333322 1122333 55555544689999885 45555445555666778
Q ss_pred CCCeEEeCCCC
Q 017886 307 GIPSYWIDSEK 317 (364)
Q Consensus 307 ~~~t~~Ie~~~ 317 (364)
+.|...+++..
T Consensus 80 ~ipvv~~~~~~ 90 (268)
T cd06323 80 GIPVFTIDREA 90 (268)
T ss_pred CCcEEEEccCC
Confidence 89999998753
No 59
>KOG0238 consensus 3-Methylcrotonyl-CoA carboxylase, biotin-containing subunit/Propionyl-CoA carboxylase, alpha chain/Acetyl-CoA carboxylase, biotin carboxylase subunit [Lipid transport and metabolism; Amino acid transport and metabolism]
Probab=59.82 E-value=67 Score=34.78 Aligned_cols=153 Identities=18% Similarity=0.161 Sum_probs=105.3
Q ss_pred ccchHHHHHHHcCCc-------ccccceEEEEeCCCCCcccHHHH------HHHHHHHHhhCCCCceE-EecccccCHHH
Q 017886 5 YTSDIIKKLKENGFE-------YTWGNVKVKLAESYGFCWGVERA------VQIAYEARKQFPEEKIW-ITNEIIHNPTV 70 (364)
Q Consensus 5 y~~~~~~~~~~~~~~-------~~~~~mkI~lA~~~GFC~GV~RA------i~~a~~~~~~~~~~~vy-~lG~iIHN~~V 70 (364)
--|++|.+.|..|.. .+...|-|..|.. -+|.|=--| ++...++++..+..-|. =+|=|--|-..
T Consensus 9 IAcRVirTakkmGI~tVAV~Sd~D~~SlHVk~ADe-av~ig~a~~~~SYL~~~~I~~aa~~tgaqaihPGYGFLSEn~~F 87 (670)
T KOG0238|consen 9 IACRVIRTAKKMGIRTVAVYSDADRNSLHVKMADE-AVCIGPAPAAQSYLRMDKIIDAAKRTGAQAIHPGYGFLSENAEF 87 (670)
T ss_pred eeehhhhHHHHhCCeEEEEEccCccccceeecccc-eeecCCCchhhhhhhHHHHHHHHHhcCCceecCCccccccchHH
Confidence 358999999999843 3334588888854 477773211 11222222221111121 36888999999
Q ss_pred HHHHHHcCcEEecCCccccccccccCCCEEEEcCCCCCHHHHHHHHhcCCcEEeccCchhHHHHHHHHHHhhCCCeEEEE
Q 017886 71 NKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIH 150 (364)
Q Consensus 71 v~~L~~~Gv~~v~~~~~~~~~~~l~~g~~VIIrAHGv~~~v~~~l~~~g~~iiDaTCP~V~kv~~~v~~~~~~Gy~iIIi 150 (364)
.+.+++.|+.|+- |+++ .||.-|.--.-++.++..|+.+|-.---.........+...+=||.|.|
T Consensus 88 ae~c~~~Gi~FiG-----------P~~~--aIrdMG~K~~sk~im~~AgVp~vpG~~g~~qs~e~~~~~a~eIgyPvMi- 153 (670)
T KOG0238|consen 88 AELCEDAGITFIG-----------PPPS--AIRDMGDKSTSKQIMKAAGVPLVPGYHGEDQSDEEAKKVAREIGYPVMI- 153 (670)
T ss_pred HHHHHHcCCeEEC-----------CCHH--HHHHhcchHHHHHHHHhcCCccccCcccccccHHHHHHHHHhcCCcEEE-
Confidence 9999999999996 2332 3788888878888888889999877777777777777777778999986
Q ss_pred ecCCCceeeeecccCCc-EEEEcChhhHHHh
Q 017886 151 GKYSHEETVATASFAGK-YIIVKNMKEAEYV 180 (364)
Q Consensus 151 G~~~HpEv~gi~g~~~~-~~vv~~~~e~~~~ 180 (364)
+++.|=.+. .-++.+.+|++..
T Consensus 154 --------Ka~~GGGGkGMria~~~~ef~~~ 176 (670)
T KOG0238|consen 154 --------KATAGGGGKGMRIAWSEEEFEEG 176 (670)
T ss_pred --------EeccCCCCcceEeecChHHHHHH
Confidence 556655554 4678888887654
No 60
>cd06356 PBP1_Amide_Urea_BP_like Periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF). This group includes the type I periplasmic-binding proteins that are predicted to have a function similar to that of an active transport system for short chain amides and/or urea in bacteria and Archaea, by sequence comparison and phylogenetic analysis.
Probab=59.61 E-value=11 Score=36.49 Aligned_cols=57 Identities=14% Similarity=0.254 Sum_probs=43.3
Q ss_pred ccccccccccHHHHHHHHHHHHhhhhCCCEEEEEcCCCCchhHHHHHHHHhhCCCeEEe
Q 017886 255 EHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWI 313 (364)
Q Consensus 255 ~~~~v~nTIC~AT~~RQ~a~~eLa~~~vD~miVVGGknSSNT~rL~eia~~~~~~t~~I 313 (364)
-++.+.||-|+++.- +.++++|. .+=.+..|||+.+|+++..+.+++++.+.+.+..
T Consensus 41 v~lv~~D~~~~p~~a-~~~~~~Li-~~~~V~aiiG~~~s~~~~a~~~~~~~~~vp~i~~ 97 (334)
T cd06356 41 VELVDYDTQSDNERY-QQYAQRLA-LQDKVDVVWGGISSASREAIRPIMDRTKQLYFYT 97 (334)
T ss_pred EEEEEECCCCCHHHH-HHHHHHHH-HhCCCCEEEeCcchHHHHHHHHHHHhcCceEEeC
Confidence 367788999988544 46667776 3334677889999999999999999988776543
No 61
>cd06353 PBP1_BmpA_Med_like Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Med, a cell-surface localized protein, which regulates the competence transcription factor gene comK in Bacillus subtilis, lacks the DNA binding domain when compared with structures of transcription regulators from the LacI family. Nevertheless, Med has significant overall sequence homology to various periplasmic substrate-binding proteins. Moreover, the structure of Med shows a striking similarity to PnrA, a periplasmic nucleoside binding protein of an ATP-binding cassette transport system. Members of this group contain the type I periplasmic sugar-binding protein-like fold.
Probab=59.54 E-value=70 Score=30.39 Aligned_cols=88 Identities=11% Similarity=0.005 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHhhhhCCCEEEEEcCCCCchhHHHHHHHHhhCCCe-EEeCCCCccCCCCcchhhhccchh----hhhccc
Q 017886 266 ATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPS-YWIDSEKRIGPGNKIAYKLMHGEL----VEKENW 340 (364)
Q Consensus 266 AT~~RQ~a~~eLa~~~vD~miVVGGknSSNT~rL~eia~~~~~~t-~~Ie~~~eL~~~~~~~~~~~~~~~----~~~~~w 340 (364)
.+..-++++++|+.+.+|++|..|...+. -+.++|++. |++ |.+-+... ...+...|.....+. +.-..+
T Consensus 42 ~~~~~~~~i~~~~~~g~dlIi~~g~~~~~---~~~~vA~~~-p~~~F~~~d~~~-~~~Nv~~~~~~~~e~~ylaG~~Aa~ 116 (258)
T cd06353 42 EGADAERVLRELAAQGYDLIFGTSFGFMD---AALKVAKEY-PDVKFEHCSGYK-TAPNVGSYFARIYEGRYLAGVVAGK 116 (258)
T ss_pred chHhHHHHHHHHHHcCCCEEEECchhhhH---HHHHHHHHC-CCCEEEECCCCC-CCCCeeeEechhhHHHHHHHHHHHH
Confidence 45677788999986679999997766554 455678777 444 44423221 212222111111111 111233
Q ss_pred CCCCCCEEEEEeCCCCCHH
Q 017886 341 LPKGQITIGITSGASTPDK 359 (364)
Q Consensus 341 l~~~~~~VGITAGASTP~~ 359 (364)
+ .+..+||+-+|...|..
T Consensus 117 ~-t~t~kVG~I~g~~~~~~ 134 (258)
T cd06353 117 M-TKTNKVGYVAAFPIPEV 134 (258)
T ss_pred h-hcCCcEEEEcCcccHHH
Confidence 4 45689999999987754
No 62
>COG3340 PepE Peptidase E [Amino acid transport and metabolism]
Probab=59.22 E-value=7 Score=37.45 Aligned_cols=97 Identities=22% Similarity=0.297 Sum_probs=54.8
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHHHHHHHhhhhCCCEEEEEcCCCCchhH
Q 017886 218 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTS 297 (364)
Q Consensus 218 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ~a~~eLa~~~vD~miVVGGknSSNT~ 297 (364)
++|++++--+-+.+ +...++..++.|.+. +-. ...+=..+... +++..-. .++|.+.|=|| ||.
T Consensus 33 ~~i~FIPtAs~~~~-~~~Yv~k~~~~l~~l-g~~--------v~~L~l~~~~~-~~Ie~~l-~~~d~IyVgGG----NTF 96 (224)
T COG3340 33 KTIAFIPTASVDSE-DDFYVEKVRNALAKL-GLE--------VSELHLSKPPL-AAIENKL-MKADIIYVGGG----NTF 96 (224)
T ss_pred ceEEEEecCccccc-hHHHHHHHHHHHHHc-CCe--------eeeeeccCCCH-HHHHHhh-hhccEEEECCc----hHH
Confidence 47888875444433 233444444433322 211 11222223333 3333322 36898887775 999
Q ss_pred HHHHHHHhhCCCeEEeCCCCccCCCCcchhhhccchhhhhcccCCCCCCEEEEEeCCC
Q 017886 298 HLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPKGQITIGITSGAS 355 (364)
Q Consensus 298 rL~eia~~~~~~t~~Ie~~~eL~~~~~~~~~~~~~~~~~~~~wl~~~~~~VGITAGAS 355 (364)
-|.+..++.|.... + .+.|= +|..-||.+|||=
T Consensus 97 ~LL~~lke~gld~i-------------I-----------r~~vk-~G~~YiG~SAGA~ 129 (224)
T COG3340 97 NLLQELKETGLDDI-------------I-----------RERVK-AGTPYIGWSAGAN 129 (224)
T ss_pred HHHHHHHHhCcHHH-------------H-----------HHHHH-cCCceEEeccCce
Confidence 99999999974211 1 12444 6889999999983
No 63
>PRK10014 DNA-binding transcriptional repressor MalI; Provisional
Probab=58.90 E-value=1.1e+02 Score=29.13 Aligned_cols=126 Identities=16% Similarity=0.271 Sum_probs=66.0
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHHHH-HHHhhhhCCCEEEEEcCCCCchh
Q 017886 218 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDA-MYKMVEEKVDLILVVGGWNSSNT 296 (364)
Q Consensus 218 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ~a-~~eLa~~~vD~miVVGGknSSNT 296 (364)
..++++... ++-.-|.++.+-+.+...++ + -.+.+. .|....++|.. +..|....+|.+|+.+... +.
T Consensus 65 ~~Igvv~~~-~~~~~~~~i~~gi~~~a~~~-g-----~~~~~~--~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~--~~ 133 (342)
T PRK10014 65 GVIGLIVRD-LSAPFYAELTAGLTEALEAQ-G-----RMVFLL--QGGKDGEQLAQRFSTLLNQGVDGVVIAGAAG--SS 133 (342)
T ss_pred CEEEEEeCC-CccchHHHHHHHHHHHHHHc-C-----CEEEEE--eCCCCHHHHHHHHHHHHhCCCCEEEEeCCCC--Cc
Confidence 468888754 44455777777666543222 1 112222 22334455543 4445556899999998643 23
Q ss_pred HHHHHHHHhhCCCeEEeCCCCccCCCCcchhhh-ccchhhhhcccCCCCCCEEEEEeCCC
Q 017886 297 SHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKL-MHGELVEKENWLPKGQITIGITSGAS 355 (364)
Q Consensus 297 ~rL~eia~~~~~~t~~Ie~~~eL~~~~~~~~~~-~~~~~~~~~~wl~~~~~~VGITAGAS 355 (364)
..+.+.+++.+.|..+++...+.+.-.-+.... ..|... .+..+..|.++||+-+|..
T Consensus 134 ~~~~~~l~~~~iPvV~~~~~~~~~~~~~V~~D~~~~~~~a-~~~L~~~G~~~I~~i~g~~ 192 (342)
T PRK10014 134 DDLREMAEEKGIPVVFASRASYLDDVDTVRPDNMQAAQLL-TEHLIRNGHQRIAWLGGQS 192 (342)
T ss_pred HHHHHHHhhcCCCEEEEecCCCCCCCCEEEeCCHHHHHHH-HHHHHHCCCCEEEEEcCCc
Confidence 456666778889999997643322100011000 111110 0011224788999987753
No 64
>PRK06555 pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Validated
Probab=58.60 E-value=18 Score=37.62 Aligned_cols=46 Identities=15% Similarity=0.287 Sum_probs=35.9
Q ss_pred HHHHHHHHHhhhhCCCEEEEEcCCCCchhH-HHHHHHHhh--CCCeEEe
Q 017886 268 QERQDAMYKMVEEKVDLILVVGGWNSSNTS-HLQEIAEDR--GIPSYWI 313 (364)
Q Consensus 268 ~~RQ~a~~eLa~~~vD~miVVGGknSSNT~-rL~eia~~~--~~~t~~I 313 (364)
..++.++..|.+..+|.+|+|||-.|-.+- +|++-+++. +.+...|
T Consensus 99 ~~~~~~~~~L~~~~Id~Li~IGGdgS~~~a~~L~~~~~~~g~~i~vvgI 147 (403)
T PRK06555 99 NPLKVAAERLAADGVDILHTIGGDDTNTTAADLAAYLAENGYDLTVVGL 147 (403)
T ss_pred HHHHHHHHHHHHcCCCEEEEECChhHHHHHHHHHHHHHHhCCCceEEEe
Confidence 356777888876789999999999997665 888888776 4566655
No 65
>PLN02251 pyrophosphate-dependent phosphofructokinase
Probab=58.03 E-value=19 Score=39.00 Aligned_cols=54 Identities=22% Similarity=0.283 Sum_probs=38.6
Q ss_pred HHHHHHHHHHhhhhCCCEEEEEcCCCCc-hhHHHHHHHHhhCCCeEEeCCCCccC
Q 017886 267 TQERQDAMYKMVEEKVDLILVVGGWNSS-NTSHLQEIAEDRGIPSYWIDSEKRIG 320 (364)
Q Consensus 267 T~~RQ~a~~eLa~~~vD~miVVGGknSS-NT~rL~eia~~~~~~t~~Ie~~~eL~ 320 (364)
..+++++++-|-+-.+|.+|||||-.|. |..+|+|-+++.|.+.-.|.=+.=||
T Consensus 176 ~e~~~~~~~~l~~l~Id~LViIGGddS~~~A~~Lae~~~~~g~~i~VIGVPKTID 230 (568)
T PLN02251 176 PEQFKQAEETATKLDLDGLVVIGGDDSNTNACLLAEYFRAKNLKTRVIGCPKTID 230 (568)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHhcCCCeeEEEeCceEe
Confidence 4466777776655679999999999987 55599999988885444444444444
No 66
>cd06281 PBP1_LacI_like_5 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=57.90 E-value=75 Score=29.10 Aligned_cols=88 Identities=14% Similarity=0.158 Sum_probs=49.5
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHHHH-HHHhhhhCCCEEEEEcCCCCchhHH
Q 017886 220 VGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDA-MYKMVEEKVDLILVVGGWNSSNTSH 298 (364)
Q Consensus 220 v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ~a-~~eLa~~~vD~miVVGGknSSNT~r 298 (364)
|+++..++.+ .-|.++.+.+.+...+. + -.+.+.++ +...++|.. ++.|.+..+|.+|+.++.. ++..
T Consensus 2 Igvv~~~~~~-~~~~~~~~~i~~~a~~~-g-----~~~~~~~~--~~~~~~~~~~i~~l~~~~vdgii~~~~~~--~~~~ 70 (269)
T cd06281 2 IGCLVSDITN-PLLAQLFSGAEDRLRAA-G-----YSLLIANS--LNDPERELEILRSFEQRRMDGIIIAPGDE--RDPE 70 (269)
T ss_pred EEEEecCCcc-ccHHHHHHHHHHHHHHc-C-----CEEEEEeC--CCChHHHHHHHHHHHHcCCCEEEEecCCC--CcHH
Confidence 4566654433 44566666665432222 1 12333322 112345544 4445446899999998743 3345
Q ss_pred HHHHHHhhCCCeEEeCCCCc
Q 017886 299 LQEIAEDRGIPSYWIDSEKR 318 (364)
Q Consensus 299 L~eia~~~~~~t~~Ie~~~e 318 (364)
+.+.+++.+.|...+++..+
T Consensus 71 ~~~~~~~~~ipvV~i~~~~~ 90 (269)
T cd06281 71 LVDALASLDLPIVLLDRDMG 90 (269)
T ss_pred HHHHHHhCCCCEEEEecccC
Confidence 56667778899999987644
No 67
>PRK10653 D-ribose transporter subunit RbsB; Provisional
Probab=57.55 E-value=1.3e+02 Score=28.36 Aligned_cols=89 Identities=9% Similarity=0.149 Sum_probs=51.7
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHH-HHHHHhhhhCCCEEEEEcCCCCchh
Q 017886 218 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSNT 296 (364)
Q Consensus 218 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ-~a~~eLa~~~vD~miVVGGknSSNT 296 (364)
+.++++.- +++-.-|.++...+.+...+. +-.+.++++--.. .+| +.+..|....+|.+|+.+. .++=+
T Consensus 27 ~~I~vi~~-~~~~~f~~~~~~~i~~~~~~~------G~~~~~~~~~~d~--~~~~~~~~~l~~~~~dgiii~~~-~~~~~ 96 (295)
T PRK10653 27 DTIALVVS-TLNNPFFVSLKDGAQKEADKL------GYNLVVLDSQNNP--AKELANVQDLTVRGTKILLINPT-DSDAV 96 (295)
T ss_pred CeEEEEec-CCCChHHHHHHHHHHHHHHHc------CCeEEEecCCCCH--HHHHHHHHHHHHcCCCEEEEcCC-ChHHH
Confidence 57888874 455566788888777643332 2234444433222 344 3344554457998876543 32211
Q ss_pred HHHHHHHHhhCCCeEEeCCC
Q 017886 297 SHLQEIAEDRGIPSYWIDSE 316 (364)
Q Consensus 297 ~rL~eia~~~~~~t~~Ie~~ 316 (364)
....+.+++.+.|...+++.
T Consensus 97 ~~~l~~~~~~~ipvV~~~~~ 116 (295)
T PRK10653 97 GNAVKMANQANIPVITLDRG 116 (295)
T ss_pred HHHHHHHHHCCCCEEEEccC
Confidence 24456777788999999864
No 68
>cd06345 PBP1_ABC_ligand_binding_like_10 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=57.45 E-value=18 Score=34.91 Aligned_cols=62 Identities=21% Similarity=0.283 Sum_probs=45.9
Q ss_pred cccccccccHHHHHHHHHHHHhhhhCCCEEEEEcCCCCchhHHHHHHHHhhCCCeEEe-CCCCcc
Q 017886 256 HFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWI-DSEKRI 319 (364)
Q Consensus 256 ~~~v~nTIC~AT~~RQ~a~~eLa~~~vD~miVVGGknSSNT~rL~eia~~~~~~t~~I-e~~~eL 319 (364)
++.+.|+-|+.+.-+ +++++|. ..=.+..|||+..|+.+..+.+++.+.+.|.+.. .+..+|
T Consensus 42 ~l~~~D~~~~~~~a~-~~~~~li-~~~~v~aiiG~~~s~~~~a~~~~~~~~~vp~i~~~~~~~~~ 104 (344)
T cd06345 42 ELVFEDTEGSPEDAV-RAFERLV-SQDKVDAVVGGYSSEVVLALQDVAAENKVPFIVTGAASPEI 104 (344)
T ss_pred EEEEecCCCCHHHHH-HHHHHHh-ccCCceEEECCcchHHHHHHHHHHHHcCCcEEeccCCCCcc
Confidence 577889999877555 4556665 2335777899999999999999999999887654 334444
No 69
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=57.20 E-value=41 Score=32.64 Aligned_cols=103 Identities=18% Similarity=0.216 Sum_probs=58.6
Q ss_pred HHHHHHHHHcCcEEecC---CccccccccccCCCEEEEcCCCCCHH-HHHHHHhcCCcE-EeccCchhHHHHHHHHHHhh
Q 017886 68 PTVNKRLEEMAVQNIPV---EEGKKQFDVVNKGDVVVLPAFGAAVE-EMVTLNNKNVQI-VDTTCPWVSKVWTSVEKHKK 142 (364)
Q Consensus 68 ~~Vv~~L~~~Gv~~v~~---~~~~~~~~~l~~g~~VIIrAHGv~~~-v~~~l~~~g~~i-iDaTCP~V~kv~~~v~~~~~ 142 (364)
..+.+.|.+.|..++-. ..+.+.+... .+..|+.- +...+ ..+.+++.++.+ ||||=||-..+.+.+.+..+
T Consensus 13 r~la~~L~~~g~~v~~s~~t~~~~~~~~~~-g~~~v~~g--~l~~~~l~~~l~~~~i~~VIDAtHPfA~~is~~a~~a~~ 89 (256)
T TIGR00715 13 RAIAKGLIAQGIEILVTVTTSEGKHLYPIH-QALTVHTG--ALDPQELREFLKRHSIDILVDATHPFAAQITTNATAVCK 89 (256)
T ss_pred HHHHHHHHhCCCeEEEEEccCCcccccccc-CCceEEEC--CCCHHHHHHHHHhcCCCEEEEcCCHHHHHHHHHHHHHHH
Confidence 34556777777654432 1111111111 12234333 33444 447777877655 99999999999999988776
Q ss_pred C-CCeEEEEecCCCceeeeecccCCcEEEEcChhhHHHh
Q 017886 143 G-DYTSIIHGKYSHEETVATASFAGKYIIVKNMKEAEYV 180 (364)
Q Consensus 143 ~-Gy~iIIiG~~~HpEv~gi~g~~~~~~vv~~~~e~~~~ 180 (364)
+ |-..+=+-.+ +.. -.+..+.+.|.+++..+
T Consensus 90 ~~~ipylR~eR~---~~~----~~~~~~~v~~~~ea~~~ 121 (256)
T TIGR00715 90 ELGIPYVRFERP---PLA----LGKNIIEVPDIEEATRV 121 (256)
T ss_pred HhCCcEEEEECC---CCC----CCCCeEEeCCHHHHHHH
Confidence 4 6666666443 210 01235677888876543
No 70
>TIGR02069 cyanophycinase cyanophycinase. This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine.
Probab=56.45 E-value=21 Score=34.37 Aligned_cols=53 Identities=19% Similarity=0.335 Sum_probs=34.5
Q ss_pred HHHHHhhhhCCCEEEEEcCCCCchhHHHHHHHHhhCCCeEEeCCCCccCCCCcchhhhccchhhhhcccCCCCCCEEEEE
Q 017886 272 DAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPKGQITIGIT 351 (364)
Q Consensus 272 ~a~~eLa~~~vD~miVVGGknSSNT~rL~eia~~~~~~t~~Ie~~~eL~~~~~~~~~~~~~~~~~~~~wl~~~~~~VGIT 351 (364)
+.+..|. .+|++++-|| ||.+|.+.-++.+. .. .++ +++.++.-.+|.+
T Consensus 75 ~~~~~l~--~ad~I~~~GG----nq~~l~~~l~~t~l-----------~~--~l~------------~~~~~G~vi~G~S 123 (250)
T TIGR02069 75 NAIALLS--NATGIFFTGG----DQLRITSLLGDTPL-----------LD--RLR------------KRVHEGIILGGTS 123 (250)
T ss_pred HHHHHHh--hCCEEEEeCC----CHHHHHHHHcCCcH-----------HH--HHH------------HHHHcCCeEEEcc
Confidence 3344553 6999999998 77888877754421 00 011 2333678899999
Q ss_pred eCCC
Q 017886 352 SGAS 355 (364)
Q Consensus 352 AGAS 355 (364)
|||+
T Consensus 124 AGA~ 127 (250)
T TIGR02069 124 AGAA 127 (250)
T ss_pred HHHH
Confidence 9996
No 71
>TIGR03190 benz_CoA_bzdN benzoyl-CoA reductase, bzd-type, N subunit. Members of this family are the N subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=56.42 E-value=23 Score=35.89 Aligned_cols=107 Identities=6% Similarity=-0.045 Sum_probs=67.0
Q ss_pred CCcccHHHHHHHHHHHHhh---C-----CCCceEEecccccCHHHHHHHHHcCcEEecCCccccccccccCCCEEEEcCC
Q 017886 34 GFCWGVERAVQIAYEARKQ---F-----PEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAF 105 (364)
Q Consensus 34 GFC~GV~RAi~~a~~~~~~---~-----~~~~vy~lG~iIHN~~Vv~~L~~~Gv~~v~~~~~~~~~~~l~~g~~VIIrAH 105 (364)
.| +|.+..+++.++.+++ . .+.+|.+.|....|+.+.+.+++.|..+|-+ +.-.|..-....=
T Consensus 201 ~~-~~~~~~~~~l~~l~~el~~~~~~~~~~~ril~tG~~~~~~~i~~~iE~~G~~VV~~--------e~c~g~r~~~~~v 271 (377)
T TIGR03190 201 QF-IDKREHNEMLKKVLAALPSRKVERKTGARFMTIGSENDDIAFMAMVESVGATIVID--------DQCSGTRYFWNAS 271 (377)
T ss_pred cC-CCHHHHHHHHHHHHHHHHhccccCCCCeEEEEECCCCCcHHHHHHHHHCCCEEEEE--------CCCcccccccccC
Confidence 35 7999999887665531 1 1236888999988888999999999999853 2222221100000
Q ss_pred CCCHHHHHHHHhcCCcEEeccCc------hhHHHHHHHHHHhhCCCeEEEEe
Q 017886 106 GAAVEEMVTLNNKNVQIVDTTCP------WVSKVWTSVEKHKKGDYTSIIHG 151 (364)
Q Consensus 106 Gv~~~v~~~l~~~g~~iiDaTCP------~V~kv~~~v~~~~~~Gy~iIIiG 151 (364)
-.+.+.++.+.++-+..+-++|. ....+.+.++++.-+| ||.+.
T Consensus 272 ~~~~dpl~alA~~yl~~~~C~~~~~p~~~R~~~i~~lv~~~~~DG--VI~~~ 321 (377)
T TIGR03190 272 KPEDDVIKAIAERYCDRPACPTKDYPVHTRYDHVLGLAKEYNVQG--AIFLQ 321 (377)
T ss_pred CCCccHHHHHHHHhcCCCCCCCcCCCHHHHHHHHHHHHHHhCCCE--EEEec
Confidence 11224577777777766777773 2555666677776676 44444
No 72
>TIGR02634 xylF D-xylose ABC transporter, substrate-binding protein. Members of this family are periplasmic (when in Gram-negative bacteria) binding proteins for D-xylose import by a high-affinity ATP-binding cassette (ABC) transporter.
Probab=56.25 E-value=68 Score=30.62 Aligned_cols=85 Identities=12% Similarity=0.136 Sum_probs=52.4
Q ss_pred EcCCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHH-HHHHHhhhhCCCEEEEEcCCCCchhHHHHHH
Q 017886 224 NQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSNTSHLQEI 302 (364)
Q Consensus 224 sQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ-~a~~eLa~~~vD~miVVGGknSSNT~rL~ei 302 (364)
..+++.-+-|..+.+.+++...+. + -++.+.++ .....+| +.++.|..+.+|.+|+.+... +-....++.
T Consensus 4 ~~~~~~~~~~~~~~~~i~~~a~~~-g-----~~v~~~~~--~~~~~~q~~~i~~l~~~~vDgIIi~~~~~-~~~~~~l~~ 74 (302)
T TIGR02634 4 SIDDLRLERWQKDRDIFVAAAESL-G-----AKVFVQSA--NGNEAKQISQIENLIARGVDVLVIIPQNG-QVLSNAVQE 74 (302)
T ss_pred ecCccchhhHHHHHHHHHHHHHhc-C-----CEEEEEeC--CCCHHHHHHHHHHHHHcCCCEEEEeCCCh-hHHHHHHHH
Confidence 456788888888888887753332 1 12332222 2234455 455555556899999986432 223455666
Q ss_pred HHhhCCCeEEeCCCC
Q 017886 303 AEDRGIPSYWIDSEK 317 (364)
Q Consensus 303 a~~~~~~t~~Ie~~~ 317 (364)
+++.+.|...+++..
T Consensus 75 ~~~~~iPvV~~d~~~ 89 (302)
T TIGR02634 75 AKDEGIKVVAYDRLI 89 (302)
T ss_pred HHHCCCeEEEecCcC
Confidence 778899998888753
No 73
>cd01413 SIR2_Af2 SIR2_Af2: Archaeal and prokaryotic group which includes Archaeoglobus fulgidus Sir2-Af2, Sulfolobus solfataricus ssSir2, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The Sir2 homolog from the archaea Sulfolobus solftaricus deacetylates the non-specific DNA protein Alba to mediate transcription repression.
Probab=56.19 E-value=27 Score=32.86 Aligned_cols=58 Identities=17% Similarity=0.229 Sum_probs=37.5
Q ss_pred ccccccccccHHHHHHHHHHHHhhhhCCCEEEEEcCCCC-chhHHHHHHHHhhCCCeEEeCC
Q 017886 255 EHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNS-SNTSHLQEIAEDRGIPSYWIDS 315 (364)
Q Consensus 255 ~~~~v~nTIC~AT~~RQ~a~~eLa~~~vD~miVVGGknS-SNT~rL~eia~~~~~~t~~Ie~ 315 (364)
+++..|+.-=.. ..-+.+ .+.+ .++|++||||-.-+ .-...|...|++.|.+.+.|.-
T Consensus 148 P~Vv~fgE~lp~-~~~~~a-~~~~-~~~Dl~lvvGTSl~V~p~~~l~~~a~~~g~~~i~iN~ 206 (222)
T cd01413 148 PDVVLFGEPLPQ-ALLREA-IEAA-KEADLFIVLGSSLVVYPANLLPLIAKENGAKLVIVNA 206 (222)
T ss_pred CCEEECCCCCCH-HHHHHH-HHHH-hcCCEEEEEccCCEeccHhHHHHHHHHcCCeEEEEcC
Confidence 344545442222 223344 4444 47999999998654 4456799999999998887764
No 74
>cd06286 PBP1_CcpB_like Ligand-binding domain of a novel transcription factor implicated in catabolite repression in Bacillus and Clostridium species. This group includes the ligand-binding domain of a novel transcription factor implicated in catabolite repression in Bacillus and Clostridium species. CcpB is 30% identical in sequence to CcpA which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. Like CcpA, the DNA-binding protein CcpB exerts its catabolite-repressing effect by a mechanism dependent on the presence of HPr(Ser-P), the small phosphocarrier proteins of the phosphoenolpyruvate-sugar phosphotransferase system, but with a less significant degree.
Probab=55.86 E-value=1e+02 Score=27.91 Aligned_cols=113 Identities=12% Similarity=0.068 Sum_probs=56.1
Q ss_pred CChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHHHH-HHHhhhhCCCEEEEEcCCCCchhHHHHHHHHhh
Q 017886 228 MLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDA-MYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDR 306 (364)
Q Consensus 228 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ~a-~~eLa~~~vD~miVVGGknSSNT~rL~eia~~~ 306 (364)
++-.-|..+.+-+++...+. +-++.++++ .-..++|.+ +..|.+..+|.+|+.+...+ ... ++.+.+.
T Consensus 9 ~~~~~~~~i~~gi~~~~~~~------g~~~~~~~~--~~~~~~~~~~i~~l~~~~vdgiii~~~~~~--~~~-~~~~~~~ 77 (260)
T cd06286 9 INHPYFSQLVDGIEKAALKH------GYKVVLLQT--NYDKEKELEYLELLKTKQVDGLILCSREND--WEV-IEPYTKY 77 (260)
T ss_pred CCCchHHHHHHHHHHHHHHc------CCEEEEEeC--CCChHHHHHHHHHHHHcCCCEEEEeCCCCC--HHH-HHHHhcC
Confidence 34444666666666543322 223434333 334556644 44454567999999876433 233 3334455
Q ss_pred CCCeEEeCCCCccCCCCcchhhh-ccchhhhhcccCCCCCCEEEEEeCC
Q 017886 307 GIPSYWIDSEKRIGPGNKIAYKL-MHGELVEKENWLPKGQITIGITSGA 354 (364)
Q Consensus 307 ~~~t~~Ie~~~eL~~~~~~~~~~-~~~~~~~~~~wl~~~~~~VGITAGA 354 (364)
+ |.+++++..+ .....+.... ..|.. .....+..|.++||+-+|.
T Consensus 78 ~-pvv~~~~~~~-~~~~~v~~d~~~~~~~-~~~~l~~~g~~~i~~i~~~ 123 (260)
T cd06286 78 G-PIVLCEEYDS-KNISSVYIDHYEAFYE-ALKYLIQKGYRKIAYCIGR 123 (260)
T ss_pred C-CEEEEecccC-CCCCEEEECChHHHHH-HHHHHHHCCCceEEEEcCC
Confidence 5 8888887644 2101111111 11111 1111222478899998774
No 75
>cd06268 PBP1_ABC_transporter_LIVBP_like Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. They are mostly present in archaea and eubacteria, and are primarily involved in scavenging solutes from the environment. ABC-type transporters couple ATP hydrolysis with the uptake and efflux of a wide range of substrates across bacterial membranes, including amino acids, peptides, lipids and sterols, and various drugs. These systems are comprised of transmembrane domains, nucleotide binding domains, and in most bacterial uptake systems, periplasmic binding proteins (PBPs) which transfer the ligand to the extracellular gate of the transmembrane domains. These PBPs bind their substrates selectively and with high affinity. Members of this group include ABC
Probab=55.63 E-value=25 Score=31.89 Aligned_cols=60 Identities=20% Similarity=0.287 Sum_probs=42.5
Q ss_pred cccccccccHHHHHHHHHHHHhhhhCCCEEEEEcCCCCchhHHHHHHHHhhCCCeEEeCCCCc
Q 017886 256 HFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKR 318 (364)
Q Consensus 256 ~~~v~nTIC~AT~~RQ~a~~eLa~~~vD~miVVGGknSSNT~rL~eia~~~~~~t~~Ie~~~e 318 (364)
++.+.|+=|++.... +.+++|....+|++ ||+..|.++..+.+++.+.+.|.+...+..+
T Consensus 42 ~~~~~d~~~~~~~~~-~~~~~l~~~~v~~i--ig~~~~~~~~~~~~~~~~~~ip~i~~~~~~~ 101 (298)
T cd06268 42 ELVVEDTQGDPEAAA-AAARELVDDGVDAV--IGPLSSGVALAAAPVAEEAGVPLISPGATSP 101 (298)
T ss_pred EEEEecCCCCHHHHH-HHHHHHHhCCceEE--EcCCcchhHHhhHHHHHhCCCcEEccCCCCc
Confidence 456778877665433 55666654456654 6887788888899999999999887766543
No 76
>cd06338 PBP1_ABC_ligand_binding_like_5 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT); however their ligand specificity has not been determined experimentally.
Probab=55.59 E-value=23 Score=34.03 Aligned_cols=61 Identities=15% Similarity=0.249 Sum_probs=46.4
Q ss_pred ccccccccccHHHHHHHHHHHHhhhhCCCEEEEEcCCCCchhHHHHHHHHhhCCCeEEeCCCC
Q 017886 255 EHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEK 317 (364)
Q Consensus 255 ~~~~v~nTIC~AT~~RQ~a~~eLa~~~vD~miVVGGknSSNT~rL~eia~~~~~~t~~Ie~~~ 317 (364)
-++.+.||-|++.... +++++|+ .+-.+..|||+..|+.+..+.+++++.+.|.+......
T Consensus 45 i~l~~~D~~~~~~~a~-~~~~~li-~~~~v~aviG~~~s~~~~a~~~~~~~~~vp~i~~~~~~ 105 (345)
T cd06338 45 VELIYYDDQSNPARAA-RAYERLI-TQDKVDFLLGPYSSGLTLAAAPVAEKYGVPMVAGSGAS 105 (345)
T ss_pred EEEEEecCCCCHHHHH-HHHHHHH-hhcCccEEecCCcchhHHHHHHHHHHhCCcEEecCCCC
Confidence 3567889988877555 5567776 33357778999999999999999999988887665443
No 77
>TIGR02477 PFKA_PPi diphosphate--fructose-6-phosphate 1-phosphotransferase. Diphosphate--fructose-6-phosphate 1-phosphotransferase catalyzes the addition of phosphate from diphosphate (PPi) to fructose 6-phosphate to give fructose 1,6-bisphosphate (EC 2.7.1.90). The enzyme is also known as pyrophosphate-dependent phosphofructokinase. The usage of PPi-dependent enzymes in glycolysis presumably frees up ATP for other processes. TIGR02482 represents the ATP-dependent 6-phosphofructokinase enzyme contained within Pfam pfam00365: Phosphofructokinase. This model hits primarily bacterial, plant alpha, and plant beta sequences.
Probab=55.50 E-value=20 Score=38.52 Aligned_cols=54 Identities=24% Similarity=0.335 Sum_probs=38.6
Q ss_pred HHHHHHHHHHhhhhCCCEEEEEcCCCCc-hhHHHHHHHHhhCCCeEEeCCCCccC
Q 017886 267 TQERQDAMYKMVEEKVDLILVVGGWNSS-NTSHLQEIAEDRGIPSYWIDSEKRIG 320 (364)
Q Consensus 267 T~~RQ~a~~eLa~~~vD~miVVGGknSS-NT~rL~eia~~~~~~t~~Ie~~~eL~ 320 (364)
..+++++++.|-+-.+|.+|+|||-.|. +..+|+|-+++.|.+.-.|.=+.-||
T Consensus 147 ~e~~~~~~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGIPkTID 201 (539)
T TIGR02477 147 EEQFAKALTTAKKLKLDGLVIIGGDDSNTNAALLAEYFAKHGLKTQVIGVPKTID 201 (539)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHhcCCCceEEEEeeeec
Confidence 5577777777766689999999999987 55589998888874433333344343
No 78
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=55.23 E-value=57 Score=32.63 Aligned_cols=77 Identities=18% Similarity=0.234 Sum_probs=47.0
Q ss_pred ceEEEEEcCCCCh-HHHHHHHHHHHHHHhhhcccccccccccccccccH-HH-HHHHHHHHHhhhhCCCEEEEEcCCCCc
Q 017886 218 VKVGIANQTTMLK-GETEEIGKLVEKTMMRKFGVENVNEHFISFNTICD-AT-QERQDAMYKMVEEKVDLILVVGGWNSS 294 (364)
Q Consensus 218 ~kv~vvsQTT~~~-~~~~~i~~~l~~~~~~~~~~~~~~~~~~v~nTIC~-AT-~~RQ~a~~eLa~~~vD~miVVGGknSS 294 (364)
+++.+|...+... ..++.+.+.|+. . +.++.+|+.+.. .| ..=+++++.+....+|++|-|||=..-
T Consensus 24 ~~~lvv~~~~~~~~~~~~~v~~~L~~----~------~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IiaiGGGs~~ 93 (370)
T cd08551 24 RKALIVTDPGLVKTGVLDKVIDSLKE----A------GIEVVIFDGVEPNPTLSNVDAAVAAYREEGCDGVIAVGGGSVL 93 (370)
T ss_pred CeEEEEeCcchhhCccHHHHHHHHHH----c------CCeEEEECCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCCchHH
Confidence 5788888766544 555667666653 1 122344544421 12 222234444423579999999999999
Q ss_pred hhHHHHHHHH
Q 017886 295 NTSHLQEIAE 304 (364)
Q Consensus 295 NT~rL~eia~ 304 (364)
.+-|.+.+..
T Consensus 94 D~AK~va~~~ 103 (370)
T cd08551 94 DTAKAIALLA 103 (370)
T ss_pred HHHHHHHHHH
Confidence 9999887654
No 79
>cd06315 PBP1_ABC_sugar_binding_like_6 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=55.11 E-value=97 Score=28.88 Aligned_cols=88 Identities=16% Similarity=0.147 Sum_probs=48.4
Q ss_pred eEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHH-HHHHHhhhhCCCEEEEEcCCCCchhH
Q 017886 219 KVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSNTS 297 (364)
Q Consensus 219 kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ-~a~~eLa~~~vD~miVVGGknSSNT~ 297 (364)
+|+++. ++++-.-|..+++-+.+...+. +-.+.+.++ ..-.++| +.++.|.+.++|.+|+++...+...
T Consensus 2 ~ig~i~-~~~~~~~~~~~~~gi~~~a~~~------gy~~~~~~~--~~~~~~~~~~i~~l~~~~vdgiil~~~~~~~~~- 71 (280)
T cd06315 2 NIIFVA-SDLKNGGILGVGEGVREAAKAI------GWNLRILDG--RGSEAGQAAALNQAIALKPDGIVLGGVDAAELQ- 71 (280)
T ss_pred eEEEEe-cccCCcHHHHHHHHHHHHHHHc------CcEEEEECC--CCCHHHHHHHHHHHHHcCCCEEEEcCCCHHHHH-
Confidence 466665 3344455667776665532222 112333332 2123344 4555555578999999974433223
Q ss_pred HHHHHHHhhCCCeEEeCCC
Q 017886 298 HLQEIAEDRGIPSYWIDSE 316 (364)
Q Consensus 298 rL~eia~~~~~~t~~Ie~~ 316 (364)
..++.+++.+.|...++..
T Consensus 72 ~~~~~~~~~~iPvV~~d~~ 90 (280)
T cd06315 72 AELELAQKAGIPVVGWHAG 90 (280)
T ss_pred HHHHHHHHCCCCEEEecCC
Confidence 4445566778999888764
No 80
>cd06328 PBP1_SBP_like_2 Periplasmic solute-binding domain of active transport proteins found in gram-negative and gram-positive bacteria. Periplasmic solute-binding domain of active transport proteins found in gram-negative and gram-positive bacteria. Members of this group are initial receptors in the process of active transport across cellular membrane, but their substrate specificities are not known in detail. However, they closely resemble the group of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus it may also be involved in transport of amino acids.
Probab=54.58 E-value=20 Score=34.68 Aligned_cols=64 Identities=11% Similarity=0.038 Sum_probs=47.8
Q ss_pred ccccccccccHHHHHHHHHHHHhhhhCCCEEEEEcCCCCchhHHHHHHHHhhCCCeEE-eCCCCccC
Q 017886 255 EHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYW-IDSEKRIG 320 (364)
Q Consensus 255 ~~~~v~nTIC~AT~~RQ~a~~eLa~~~vD~miVVGGknSSNT~rL~eia~~~~~~t~~-Ie~~~eL~ 320 (364)
-++.+.|+-|+.+.-++ ++++|+ .+-++..|||+..|+-+..+..++++.+.|.+. .-+..+|.
T Consensus 42 i~lv~~D~~~~p~~a~~-~~~~li-~~~~V~avvG~~~S~~~~a~~~~~~~~~ip~i~~~~~~~~l~ 106 (333)
T cd06328 42 IEVIVKDDAGNPEVAVS-LARELI-GDDGVDILVGSTSSGVALAVLPVAEENKKILIVEPAAADSIT 106 (333)
T ss_pred EEEEEecCCCChHHHHH-HHHHHH-HhcCCeEEEccCCcHHHHHHHHHHHHhCCcEEecCCCCchhh
Confidence 35678899999888874 556666 344567777999999899999999999888764 34455554
No 81
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=54.39 E-value=58 Score=32.00 Aligned_cols=116 Identities=15% Similarity=0.210 Sum_probs=72.4
Q ss_pred ceEEecccccCHHHHHHHHHcC-cEEecCCcc-ccccccccCCCEEEEcCCCCCHHHHHHHHhcCCcE-EeccCchhHHH
Q 017886 57 KIWITNEIIHNPTVNKRLEEMA-VQNIPVEEG-KKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQI-VDTTCPWVSKV 133 (364)
Q Consensus 57 ~vy~lG~iIHN~~Vv~~L~~~G-v~~v~~~~~-~~~~~~l~~g~~VIIrAHGv~~~v~~~l~~~g~~i-iDaTCP~V~kv 133 (364)
.|+++|=----....++|...+ ..++.+..+ ...+.+. .+. +.+.-.|-.....+.+++.++.+ ||||=||-..+
T Consensus 4 ~ilvlGGT~Dar~la~~L~~~~~~~~~ss~t~~g~~l~~~-~~~-~~~~G~l~~e~l~~~l~e~~i~llIDATHPyAa~i 81 (257)
T COG2099 4 RILLLGGTSDARALAKKLAAAPVDIILSSLTGYGAKLAEQ-IGP-VRVGGFLGAEGLAAFLREEGIDLLIDATHPYAARI 81 (257)
T ss_pred eEEEEeccHHHHHHHHHhhccCccEEEEEcccccccchhc-cCC-eeecCcCCHHHHHHHHHHcCCCEEEECCChHHHHH
Confidence 3555555555555566666665 223332111 1111111 132 77888999999999999999876 99999999999
Q ss_pred HHHHHHHhhC-CCeEEEEecCCCceeeeecccCCcEEEEcChhhHHHh
Q 017886 134 WTSVEKHKKG-DYTSIIHGKYSHEETVATASFAGKYIIVKNMKEAEYV 180 (364)
Q Consensus 134 ~~~v~~~~~~-Gy~iIIiG~~~HpEv~gi~g~~~~~~vv~~~~e~~~~ 180 (364)
-+-+-+..++ |-..+-+=.+.-... .+..+-|.|.+|+..+
T Consensus 82 S~Na~~aake~gipy~r~eRP~~~~~------gd~~~~V~d~~ea~~~ 123 (257)
T COG2099 82 SQNAARAAKETGIPYLRLERPPWAPN------GDNWIEVADIEEAAEA 123 (257)
T ss_pred HHHHHHHHHHhCCcEEEEECCccccC------CCceEEecCHHHHHHH
Confidence 8777777664 666555554432221 1346778888887654
No 82
>PF00762 Ferrochelatase: Ferrochelatase; InterPro: IPR001015 Synonym(s): Protohaem ferro-lyase, Iron chelatase, etc. Ferrochelatase catalyses the last step in haem biosynthesis: the chelation of a ferrous ion to proto-porphyrin IX, to form protohaem [, ]. In eukaryotic cells, it binds to the mitochondrial inner membrane with its active site on the matrix side of the membrane. The X-ray structure of Bacillus subtilis and human ferrochelatase have been solved [, ]. The human enzyme exists as a homodimer. Each subunit contains one [2Fe-2S] cluster. The monomer is folded into two similar domains, each with a four-stranded parallel beta-sheet flanked by an alpha-helix in a beta-alpha-beta motif that is reminiscent of the fold found in the periplasmic binding proteins. The topological similarity between the domains suggests that they have arisen from a gene duplication event. However, significant differences exist between the two domains, including an N-terminal section (residues 80-130) that forms part of the active site pocket, and a C-terminal extension (residues 390-423) that is involved in coordination of the [2Fe-2S] cluster and in stabilisation of the homodimer. Ferrochelatase seems to have a structurally conserved core region that is common to the enzyme from bacteria, plants and mammals. Porphyrin binds in the identified cleft; this cleft also includes the metal-binding site of the enzyme. It is likely that the structure of the cleft region will have different conformations upon substrate binding and release [].; GO: 0004325 ferrochelatase activity, 0006783 heme biosynthetic process; PDB: 2QD3_B 2HRE_C 3HCN_B 2PNJ_A 2QD1_C 1HRK_A 2QD4_B 3AQI_B 2HRC_B 3HCO_B ....
Probab=54.11 E-value=44 Score=33.29 Aligned_cols=94 Identities=13% Similarity=0.105 Sum_probs=58.7
Q ss_pred CCCCCcccHHHHHHHHHHHHhhC-CCCceEEecccccCHHHHHHHHHcCcEEecCCccccccccc--cCCCEEEEcCCCC
Q 017886 31 ESYGFCWGVERAVQIAYEARKQF-PEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVV--NKGDVVVLPAFGA 107 (364)
Q Consensus 31 ~~~GFC~GV~RAi~~a~~~~~~~-~~~~vy~lG~iIHN~~Vv~~L~~~Gv~~v~~~~~~~~~~~l--~~g~~VIIrAHGv 107 (364)
-|.-=+..+.-+++.+.+++++. ...++-.+.+---+|..++.+.++=-.. ++.. ++++.+||+|||+
T Consensus 123 yPqyS~~ttgs~~~~~~~~~~~~~~~~~~~~i~~~~~~p~yi~a~~~~i~~~---------l~~~~~~~~~~llfSaHgl 193 (316)
T PF00762_consen 123 YPQYSSSTTGSYLDEVERALKKSRPNPKVRFIPSFYDHPAYIEALAERIREA---------LERFPRGEPDHLLFSAHGL 193 (316)
T ss_dssp SSS--TTTHHHHHHHHHHHHHHTHSSSEEEEE---TT-HHHHHHHHHHHHHH---------HTTS-HCCCEEEEEEEE--
T ss_pred CCchhHhhHHHHHHHHHHHHHhcCCCCeEEEeCCccCCHHHHHHHHHHHHHH---------HHhcCCCCCCEEEEccCCC
Confidence 34444557777788888877662 2347888999999999999887662222 2333 2357899999999
Q ss_pred CHHHHHHHHhcCCcEEeccCchhHHHHHHHHHHhhC
Q 017886 108 AVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKG 143 (364)
Q Consensus 108 ~~~v~~~l~~~g~~iiDaTCP~V~kv~~~v~~~~~~ 143 (364)
|....+ ++| .||...++..++.+.+.
T Consensus 194 P~~~~~---~~G-------dpY~~~~~~t~~~i~~~ 219 (316)
T PF00762_consen 194 PQRYVE---DKG-------DPYPAQCEETARLIAER 219 (316)
T ss_dssp BHHHHT---CCT--------SHHHHHHHHHHHHHHH
T ss_pred Cccccc---cCC-------CChHHHHHHHHHHHHHH
Confidence 987652 122 38999888888877664
No 83
>cd06346 PBP1_ABC_ligand_binding_like_11 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=53.84 E-value=16 Score=34.93 Aligned_cols=57 Identities=19% Similarity=0.106 Sum_probs=42.2
Q ss_pred ccccccccccHHHHHHHHHHHHhhhhCCCEEEEEcCCCCchhHHH-HHHHHhhCCCeEEe
Q 017886 255 EHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHL-QEIAEDRGIPSYWI 313 (364)
Q Consensus 255 ~~~~v~nTIC~AT~~RQ~a~~eLa~~~vD~miVVGGknSSNT~rL-~eia~~~~~~t~~I 313 (364)
-++.+.||=|++..-. +++++|. .+-++..|||+..|+++..+ .+++.+.+.|.+-.
T Consensus 41 iel~~~D~~~~p~~a~-~~a~~li-~~~~v~~viG~~~s~~~~a~~~~~~~~~~vp~i~~ 98 (312)
T cd06346 41 VTLVTADTQTDPAAGV-AAATKLV-NVDGVPGIVGAACSGVTIAALTSVAVPNGVVMISP 98 (312)
T ss_pred EEEEECCCCCCHHHHH-HHHHHHH-hhcCCCEEEccccchhhHhhhhhhhccCCcEEEec
Confidence 3677889988776655 4556665 23345567799999999999 89999888776543
No 84
>cd06311 PBP1_ABC_sugar_binding_like_3 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=53.61 E-value=1.1e+02 Score=28.01 Aligned_cols=92 Identities=16% Similarity=0.176 Sum_probs=48.1
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHHHHHHH-hhhhCCCEEEEEcCCCCchhHH
Q 017886 220 VGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYK-MVEEKVDLILVVGGWNSSNTSH 298 (364)
Q Consensus 220 v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ~a~~e-La~~~vD~miVVGGknSSNT~r 298 (364)
++++.. +++-.-|..+.+-+++...+. +....+-.+.+.++- ...+.|..+.+ |.+..+|.+|+.+...++ ...
T Consensus 2 Ig~i~~-~~~~~f~~~~~~gi~~~a~~~-~~~~~g~~~~~~~~~--~~~~~~~~~~~~l~~~~vDgiii~~~~~~~-~~~ 76 (274)
T cd06311 2 IGVSIP-AADHGWTAGIVWHAQAAAKKL-EAAYPDVEFILVTAS--NDTEQQNAQQDLLINRKIDALVILPFESAP-LTQ 76 (274)
T ss_pred eeeecc-CCCCcHHHHHHHHHHHHHHHh-hhhCCCeEEEEEcCC--CCHHHHHHHHHHHHHcCCCEEEEeCCCchh-hHH
Confidence 344443 344555667776666543322 100001123333322 22345544444 654579999998653322 234
Q ss_pred HHHHHHhhCCCeEEeCCC
Q 017886 299 LQEIAEDRGIPSYWIDSE 316 (364)
Q Consensus 299 L~eia~~~~~~t~~Ie~~ 316 (364)
.++.+++.|.|...+++.
T Consensus 77 ~i~~~~~~gIpvV~~d~~ 94 (274)
T cd06311 77 PVAKAKKAGIFVVVVDRG 94 (274)
T ss_pred HHHHHHHCCCeEEEEcCC
Confidence 445667889999999874
No 85
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=53.49 E-value=25 Score=28.54 Aligned_cols=72 Identities=17% Similarity=0.203 Sum_probs=47.9
Q ss_pred EEEcCCCCCHHHHHHHHhcC--CcEEeccCchhHHHHHHHHHHhhCCCeEEEEecCCCceeeeecccCC-cEEEEcChhh
Q 017886 100 VVLPAFGAAVEEMVTLNNKN--VQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAG-KYIIVKNMKE 176 (364)
Q Consensus 100 VIIrAHGv~~~v~~~l~~~g--~~iiDaTCP~V~kv~~~v~~~~~~Gy~iIIiG~~~HpEv~gi~g~~~-~~~vv~~~~e 176 (364)
||+-.--++..+.+.|.+.+ +.+||.. ++.++++.++|+. ++.||..+|++---.+... +.+++...+|
T Consensus 2 vI~G~g~~~~~i~~~L~~~~~~vvvid~d-------~~~~~~~~~~~~~-~i~gd~~~~~~l~~a~i~~a~~vv~~~~~d 73 (116)
T PF02254_consen 2 VIIGYGRIGREIAEQLKEGGIDVVVIDRD-------PERVEELREEGVE-VIYGDATDPEVLERAGIEKADAVVILTDDD 73 (116)
T ss_dssp EEES-SHHHHHHHHHHHHTTSEEEEEESS-------HHHHHHHHHTTSE-EEES-TTSHHHHHHTTGGCESEEEEESSSH
T ss_pred EEEcCCHHHHHHHHHHHhCCCEEEEEECC-------cHHHHHHHhcccc-cccccchhhhHHhhcCccccCEEEEccCCH
Confidence 44544455677888898877 4456654 6668888889977 6779999999976666544 4566655455
Q ss_pred HHH
Q 017886 177 AEY 179 (364)
Q Consensus 177 ~~~ 179 (364)
..+
T Consensus 74 ~~n 76 (116)
T PF02254_consen 74 EEN 76 (116)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 86
>cd06367 PBP1_iGluR_NMDA N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptors. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptors. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. The function of the NMDA subtype receptor serves critical functions in neuronal development, functioning, and degeneration in the mammalian central nervous system. The functional NMDA receptor is a heterotetramer comprising two NR1 and two NR2 (A, B, C, and D) or NR3 (A and B) subunits
Probab=53.26 E-value=45 Score=32.59 Aligned_cols=58 Identities=14% Similarity=-0.009 Sum_probs=46.1
Q ss_pred cccccccccccHHHHHHHHHHHHhhhhCCCEEEEEcCCCCch---hHHHHHHHHhhCCCeEEe
Q 017886 254 NEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSN---TSHLQEIAEDRGIPSYWI 313 (364)
Q Consensus 254 ~~~~~v~nTIC~AT~~RQ~a~~eLa~~~vD~miVVGGknSSN---T~rL~eia~~~~~~t~~I 313 (364)
.-++.+.|+-|+..+--+.+.+.|. .+ .+.+|+|+..|+. +.-+..+|...+.|..-.
T Consensus 36 ~~~l~~~d~~~d~~~~~~~~~~~l~-~~-~v~~iig~~~s~~~~~~~~~~~v~~~~~iP~Is~ 96 (362)
T cd06367 36 SLEAVAVSNDTDPISLLLSVCDLLV-VQ-VVAGVVFSDPTDEEAVAQILDFTSAQTRIPVVGI 96 (362)
T ss_pred ceEEEEEecCCCHHHHHHHHHHHhc-cc-ceEEEEecCCCCccchhhhhhhhhhhhcCcEEEe
Confidence 3466778889988777777777776 34 7788889999999 999999999999886543
No 87
>cd06282 PBP1_GntR_like_2 Ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding
Probab=53.21 E-value=1.3e+02 Score=27.12 Aligned_cols=76 Identities=16% Similarity=0.162 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHH-HHHHHhhhhCCCEEEEEcCCCCchhHHHHHHHHhhCCC
Q 017886 231 GETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIP 309 (364)
Q Consensus 231 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ-~a~~eLa~~~vD~miVVGGknSSNT~rL~eia~~~~~~ 309 (364)
.-|..+.+.+.+... .+ +-.+.++++-.+. .+| +.++.|.+.++|.+|+..+... + ...++.+++.|.|
T Consensus 12 ~~~~~~~~~i~~~~~-~~-----g~~~~~~~~~~~~--~~~~~~~~~l~~~~vdgiii~~~~~~-~-~~~~~~~~~~~ip 81 (266)
T cd06282 12 PVFAECVQGIQEEAR-AA-----GYSLLLATTDYDA--EREADAVETLLRQRVDGLILTVADAA-T-SPALDLLDAERVP 81 (266)
T ss_pred chHHHHHHHHHHHHH-HC-----CCEEEEeeCCCCH--HHHHHHHHHHHhcCCCEEEEecCCCC-c-hHHHHHHhhCCCC
Confidence 445556555554322 21 2234444443233 333 4455554468999998665432 2 3466778888999
Q ss_pred eEEeCCC
Q 017886 310 SYWIDSE 316 (364)
Q Consensus 310 t~~Ie~~ 316 (364)
...+.+.
T Consensus 82 vV~~~~~ 88 (266)
T cd06282 82 YVLAYND 88 (266)
T ss_pred EEEEecc
Confidence 8888654
No 88
>PF00389 2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; InterPro: IPR006139 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. The catalytic domain contains a number of conserved charged residues which may play a role in the catalytic mechanism. The NAD-binding domain is described in IPR006140 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 2DLD_A 2G76_B 3DC2_B 1YGY_B 3DDN_A 3KB6_B 3K5P_A 3EVT_A 1WWK_B 1GDH_A ....
Probab=53.16 E-value=23 Score=29.97 Aligned_cols=83 Identities=18% Similarity=0.237 Sum_probs=46.2
Q ss_pred eEEecccccCHHHHHHHHHcC--cEEecCCccccccccccCCCEEEEcCCC-CCHHHHHHHHhcCCcEEeccCchhHHHH
Q 017886 58 IWITNEIIHNPTVNKRLEEMA--VQNIPVEEGKKQFDVVNKGDVVVLPAFG-AAVEEMVTLNNKNVQIVDTTCPWVSKVW 134 (364)
Q Consensus 58 vy~lG~iIHN~~Vv~~L~~~G--v~~v~~~~~~~~~~~l~~g~~VIIrAHG-v~~~v~~~l~~~g~~iiDaTCP~V~kv~ 134 (364)
|+++++| ++..++.|++ | |.+.+..+..+-.+.+++=|.+|.+... +++++++.+ .++++|=..+-=+-++
T Consensus 1 ili~~~~--~~~~~~~l~~-~~~v~~~~~~~~~~~~~~l~~~d~ii~~~~~~~~~~~l~~~--~~Lk~I~~~~~G~d~i- 74 (133)
T PF00389_consen 1 ILITDPL--PDEEIERLEE-GFEVEFCDSPSEEELAERLKDADAIIVGSGTPLTAEVLEAA--PNLKLISTAGAGVDNI- 74 (133)
T ss_dssp EEESSS---SHHHHHHHHH-TSEEEEESSSSHHHHHHHHTTESEEEESTTSTBSHHHHHHH--TT-SEEEESSSSCTTB-
T ss_pred eEEeccC--CHHHHHHHHC-CceEEEeCCCCHHHHHHHhCCCeEEEEcCCCCcCHHHHhcc--ceeEEEEEcccccCcc-
Confidence 5667777 8899999999 5 4444432111111123333556666666 889999888 6888886555444333
Q ss_pred HHHHHHhhCCCeE
Q 017886 135 TSVEKHKKGDYTS 147 (364)
Q Consensus 135 ~~v~~~~~~Gy~i 147 (364)
-...+.+.|-.|
T Consensus 75 -d~~~a~~~gI~V 86 (133)
T PF00389_consen 75 -DLEAAKERGIPV 86 (133)
T ss_dssp --HHHHHHTTSEE
T ss_pred -cHHHHhhCeEEE
Confidence 123334455443
No 89
>cd06306 PBP1_TorT-like TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. The Tor respiratory system is consists of three proteins (TorC, TorA, and TorD) and is induced in the presence of TMAO. The TMAO control is tightly regulated by three proteins: TorS, TorT, and TorR. Thus, the disruption of any of these proteins can abolish the Tor respiratory induction. TorT shares homology with the sugar-binding domain of the type I periplasmic binding proteins. The members of TorT-like family bind TMAO or related compounds and are predicted to be involved in signal transduction and/or substrate transport.
Probab=52.76 E-value=95 Score=28.66 Aligned_cols=87 Identities=8% Similarity=-0.086 Sum_probs=47.4
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHH-HHHHHhhhhCCCEEEEEcCCCCchhHH
Q 017886 220 VGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSNTSH 298 (364)
Q Consensus 220 v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ-~a~~eLa~~~vD~miVVGGknSSNT~r 298 (364)
|+++.- +++-.-|..+..-+.+...+. +-++.+.++-.+...+.| +.++.|...++|.+|+.+...... .
T Consensus 2 Igvi~~-~~~~~f~~~~~~gi~~~a~~~------g~~~~~~~~~~~~~~~~~~~~i~~~~~~~vdgiI~~~~~~~~~-~- 72 (268)
T cd06306 2 LCVLYP-HLKDAYWLSVNYGMVEEAKRL------GVSLKLLEAGGYPNLAKQIAQLEDCAAWGADAILLGAVSPDGL-N- 72 (268)
T ss_pred eEEEcC-CCCCHHHHHHHHHHHHHHHHc------CCEEEEecCCCCCCHHHHHHHHHHHHHcCCCEEEEcCCChhhH-H-
Confidence 444442 344556777777776543322 223443332222222334 456665556899999986433222 2
Q ss_pred HHHHHHhhCCCeEEeCC
Q 017886 299 LQEIAEDRGIPSYWIDS 315 (364)
Q Consensus 299 L~eia~~~~~~t~~Ie~ 315 (364)
.+.-+++.|.|...+.+
T Consensus 73 ~~~~~~~~giPvV~~~~ 89 (268)
T cd06306 73 EILQQVAASIPVIALVN 89 (268)
T ss_pred HHHHHHHCCCCEEEecc
Confidence 33446678899988864
No 90
>cd01979 Pchlide_reductase_N Pchlide_reductase_N: N protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=52.13 E-value=2.6e+02 Score=28.43 Aligned_cols=105 Identities=12% Similarity=0.203 Sum_probs=57.6
Q ss_pred ceEEEEeCCCCCcccHHHHHHHHHHHH----hh--CCCCceEEecccc--cCHHHHHHHHHcCcEEecCCcccccccccc
Q 017886 24 NVKVKLAESYGFCWGVERAVQIAYEAR----KQ--FPEEKIWITNEII--HNPTVNKRLEEMAVQNIPVEEGKKQFDVVN 95 (364)
Q Consensus 24 ~mkI~lA~~~GFC~GV~RAi~~a~~~~----~~--~~~~~vy~lG~iI--HN~~Vv~~L~~~Gv~~v~~~~~~~~~~~l~ 95 (364)
+..|+.....||-.....+.+.+.+++ .+ ..+..|-.+|++- -..+...-|++.|+.++.-... .++++++
T Consensus 118 ~~pvi~v~t~gf~g~~~~G~~~~~~alv~~~~~~~~~~~~VnliG~~~~~d~~el~~lL~~~Gi~v~~~~~d-~~~~~~~ 196 (396)
T cd01979 118 GVPILVASASGLDYTFTQGEDTVLAALVPRCPEKPSPERSLVLVGSLPDIVEDQLRRELEQLGIPVVGFLPP-RRYTDLP 196 (396)
T ss_pred CCcEEEeeCCCccccHHHHHHHHHHHHhhhcccccCCCCceEEEEeCCcchHHHHHHHHHHcCCeEEEEeCC-CChHHhh
Confidence 456788889998643455555554433 11 1124688888631 1234556678999998632111 1345554
Q ss_pred C--CCEEEEcCCCCCHHHHHHHHh-cCCcEEeccCch
Q 017886 96 K--GDVVVLPAFGAAVEEMVTLNN-KNVQIVDTTCPW 129 (364)
Q Consensus 96 ~--g~~VIIrAHGv~~~v~~~l~~-~g~~iiDaTCP~ 129 (364)
. .+.+++-.|......-+.|++ .|+..+...=|+
T Consensus 197 ~~~~a~~~~~~~~~~~~~A~~Le~r~giP~~~~~~P~ 233 (396)
T cd01979 197 VIGPGTYVLGIQPFLSRTATTLMRRRKCKLLSAPFPI 233 (396)
T ss_pred ccCcceEEEEeChhHHHHHHHHHHhcCCCcccCCcCc
Confidence 3 234555444443455666655 477666555544
No 91
>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.
Probab=52.00 E-value=1.6e+02 Score=26.08 Aligned_cols=120 Identities=18% Similarity=0.171 Sum_probs=63.9
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHH-HHHHHhhhhCCCEEEEEcCCCCchhHH
Q 017886 220 VGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSNTSH 298 (364)
Q Consensus 220 v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ-~a~~eLa~~~vD~miVVGGknSSNT~r 298 (364)
++++..++ +..-|..+.+-+++..... + -++.+.+. .....+| +.++.+....+|++++.+...++.-
T Consensus 2 i~~v~~~~-~~~~~~~~~~g~~~~~~~~-g-----~~~~~~~~--~~~~~~~~~~~~~~~~~~~d~iii~~~~~~~~~-- 70 (264)
T cd06267 2 IGVIVPDI-SNPFFAELLRGIEEAAREA-G-----YSVLLCNS--DEDPEKEREALELLLSRRVDGIILAPSRLDDEL-- 70 (264)
T ss_pred EEEEECCC-CCHHHHHHHHHHHHHHHHc-C-----CEEEEEcC--CCCHHHHHHHHHHHHHcCcCEEEEecCCcchHH--
Confidence 56777665 5566777777776643322 1 22333222 2222333 3444555568999988776644322
Q ss_pred HHHHHHhhCCCeEEeCCCCccCCCCcchhhh----ccchhhhhcccCC-CCCCEEEEEeCCCC
Q 017886 299 LQEIAEDRGIPSYWIDSEKRIGPGNKIAYKL----MHGELVEKENWLP-KGQITIGITSGAST 356 (364)
Q Consensus 299 L~eia~~~~~~t~~Ie~~~eL~~~~~~~~~~----~~~~~~~~~~wl~-~~~~~VGITAGAST 356 (364)
.+.+.+.+.|...+.+..+-.. +.|-. ..|+. ...||. .+.++|++-.|...
T Consensus 71 -~~~~~~~~ipvv~~~~~~~~~~---~~~v~~d~~~~g~~--~~~~l~~~g~~~i~~i~~~~~ 127 (264)
T cd06267 71 -LEELAALGIPVVLVDRPLDGLG---VDSVGIDNRAGAYL--AVEHLIELGHRRIAFIGGPPD 127 (264)
T ss_pred -HHHHHHcCCCEEEecccccCCC---CCEEeeccHHHHHH--HHHHHHHCCCceEEEecCCCc
Confidence 5567788899988877532111 11111 11121 113331 36789998876544
No 92
>cd06339 PBP1_YraM_LppC_lipoprotein_like Periplasmic binding component of lipoprotein LppC, an immunodominant antigen. This subgroup includes periplasmic binding component of lipoprotein LppC, an immunodominant antigen, whose molecular function is not characterized. Members of this subgroup are predicted to be involved in transport of lipid compounds, and they are sequence similar to the family of ABC-type hydrophobic amino acid transporters (HAAT).
Probab=51.96 E-value=52 Score=32.05 Aligned_cols=96 Identities=18% Similarity=0.246 Sum_probs=57.7
Q ss_pred ccccccccccHHHHHHHHHHHHhhhhCCCEEEEEcCCCCchhHHHHHHHHhhCCCeEEeCCCCccC-CCCcchhhh-ccc
Q 017886 255 EHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIG-PGNKIAYKL-MHG 332 (364)
Q Consensus 255 ~~~~v~nTIC~AT~~RQ~a~~eLa~~~vD~miVVGGknSSNT~rL~eia~~~~~~t~~Ie~~~eL~-~~~~~~~~~-~~~ 332 (364)
-++.+.||=| +.... +++++|....|| +|||+..|+++.-+.+++.+.+.|.+...+..++. ..+.++... ...
T Consensus 35 i~l~~~D~~~-~~~a~-~~~~~li~~~V~--~iiG~~~s~~~~a~~~~~~~~~ip~i~~~~~~~~~~~~~~f~~~~~~~~ 110 (336)
T cd06339 35 IELRVYDTAG-AAGAA-AAARQAVAEGAD--IIVGPLLKENVAALAAAAAELGVPVLALNNDESVAAGPNLFYFGLSPED 110 (336)
T ss_pred ceEEEEeCCC-cccHH-HHHHHHHHcCCC--EEEccCCHHHHHHHHhhhccCCCCEEEccCCccccCCCCEEEecCChHH
Confidence 3577889988 55444 455667643444 78999999999888899999998887766555432 222222111 111
Q ss_pred hhhhhcccCC-CCCCEEEEEeCC
Q 017886 333 ELVEKENWLP-KGQITIGITSGA 354 (364)
Q Consensus 333 ~~~~~~~wl~-~~~~~VGITAGA 354 (364)
+......|+. .+.++|+|..+.
T Consensus 111 ~~~~~~~~~~~~g~k~vaii~~~ 133 (336)
T cd06339 111 EARRAAEYARSQGKRRPLVLAPD 133 (336)
T ss_pred HHHHHHHHHHhcCccceEEEecC
Confidence 1111123331 257889988753
No 93
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=51.84 E-value=63 Score=32.82 Aligned_cols=79 Identities=15% Similarity=0.276 Sum_probs=48.6
Q ss_pred ceEEEEEcCCCCh-HHHHHHHHHHHHHHhhhccccccccccccccccc-HHHHHH-HHHHHHhhhhCCCEEEEEcCCCCc
Q 017886 218 VKVGIANQTTMLK-GETEEIGKLVEKTMMRKFGVENVNEHFISFNTIC-DATQER-QDAMYKMVEEKVDLILVVGGWNSS 294 (364)
Q Consensus 218 ~kv~vvsQTT~~~-~~~~~i~~~l~~~~~~~~~~~~~~~~~~v~nTIC-~AT~~R-Q~a~~eLa~~~vD~miVVGGknSS 294 (364)
+++.+|.-..+.. ..++++.+.|++ . +..+.+|+.+. +.|.+- ++++...-..++|++|-|||=.+-
T Consensus 32 ~~~livt~~~~~~~g~~~~v~~~L~~----~------~i~~~~f~~v~~np~~~~v~~~~~~~~~~~~D~IiaiGGGS~i 101 (383)
T PRK09860 32 TRTLIVTDNMLTKLGMAGDVQKALEE----R------NIFSVIYDGTQPNPTTENVAAGLKLLKENNCDSVISLGGGSPH 101 (383)
T ss_pred CEEEEEcCcchhhCccHHHHHHHHHH----c------CCeEEEeCCCCCCcCHHHHHHHHHHHHHcCCCEEEEeCCchHH
Confidence 5888887765432 356677766654 1 22345666653 222222 222222223579999999999999
Q ss_pred hhHHHHHHHHhh
Q 017886 295 NTSHLQEIAEDR 306 (364)
Q Consensus 295 NT~rL~eia~~~ 306 (364)
.+-|.+-++...
T Consensus 102 D~AK~ia~~~~~ 113 (383)
T PRK09860 102 DCAKGIALVAAN 113 (383)
T ss_pred HHHHHHHHHHHC
Confidence 999998876544
No 94
>PRK15408 autoinducer 2-binding protein lsrB; Provisional
Probab=51.77 E-value=1.2e+02 Score=30.07 Aligned_cols=128 Identities=13% Similarity=0.115 Sum_probs=71.2
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHH-HHHHHhhhhCCCEEEEEcCCCCch
Q 017886 217 LVKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSN 295 (364)
Q Consensus 217 ~~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ-~a~~eLa~~~vD~miVVGGknSSN 295 (364)
..+++++.+++-+ .-|..+.+-+++... ..+ -++.+.. --......| +.+..|.++.+|.++|.+ ++++
T Consensus 23 ~~~i~~v~k~~~~-pf~~~~~~Gi~~aa~-~~G-----~~v~~~~-~~~~d~~~q~~~i~~li~~~vdgIiv~~--~d~~ 92 (336)
T PRK15408 23 AERIAFIPKLVGV-GFFTSGGNGAKEAGK-ELG-----VDVTYDG-PTEPSVSGQVQLINNFVNQGYNAIIVSA--VSPD 92 (336)
T ss_pred CcEEEEEECCCCC-HHHHHHHHHHHHHHH-HhC-----CEEEEEC-CCCCCHHHHHHHHHHHHHcCCCEEEEec--CCHH
Confidence 3689999988765 347777776665322 222 2232211 112334556 455566557899999973 3444
Q ss_pred -hHHHHHHHHhhCCCeEEeCCCCccCCCCcchhh-----hccchh--hhhcccCCCCCCEEEEEeCCCC
Q 017886 296 -TSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYK-----LMHGEL--VEKENWLPKGQITIGITSGAST 356 (364)
Q Consensus 296 -T~rL~eia~~~~~~t~~Ie~~~eL~~~~~~~~~-----~~~~~~--~~~~~wl~~~~~~VGITAGAST 356 (364)
.....+-+++.|.|...+++..+-+ ....|- ...|+. ......+..+..+|++-.|..+
T Consensus 93 al~~~l~~a~~~gIpVV~~d~~~~~~--~~~~~V~~~~~~~~G~~~~~~l~~~l~~g~gki~il~g~~~ 159 (336)
T PRK15408 93 GLCPALKRAMQRGVKVLTWDSDTKPE--CRSYYINQGTPEQLGSMLVEMAAKQVGKDKAKVAFFYSSPT 159 (336)
T ss_pred HHHHHHHHHHHCCCeEEEeCCCCCCc--cceEEEecCCHHHHHHHHHHHHHHhcCCCCCEEEEEECCCC
Confidence 2455566788899999998753211 122221 012222 1112233126789999988654
No 95
>cd01538 PBP1_ABC_xylose_binding Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic xylose-binding protein is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=51.60 E-value=1.7e+02 Score=27.32 Aligned_cols=87 Identities=20% Similarity=0.187 Sum_probs=50.7
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHH-HHHHHhhhhCCCEEEEEcCCCCchhHH
Q 017886 220 VGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSNTSH 298 (364)
Q Consensus 220 v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ-~a~~eLa~~~vD~miVVGGknSSNT~r 298 (364)
|+++.. .++-.-|..+..-+.+...+. +-++.+.++-... .+| +.++++.+.++|.+|+.+...++ ...
T Consensus 2 I~vi~~-~~~~~~~~~~~~gi~~~a~~~------g~~~~~~~~~~~~--~~~~~~i~~~~~~~vdgiii~~~~~~~-~~~ 71 (288)
T cd01538 2 IGLSLP-TKTEERWIRDRPNFEAALKEL------GAEVIVQNANGDP--AKQISQIENMIAKGVDVLVIAPVDGEA-LAS 71 (288)
T ss_pred eEEEEe-CCCcHHHHHHHHHHHHHHHHc------CCEEEEECCCCCH--HHHHHHHHHHHHcCCCEEEEecCChhh-HHH
Confidence 445543 245566777777776643322 2335555554333 334 44444545789999998743322 234
Q ss_pred HHHHHHhhCCCeEEeCCC
Q 017886 299 LQEIAEDRGIPSYWIDSE 316 (364)
Q Consensus 299 L~eia~~~~~~t~~Ie~~ 316 (364)
+++.+++.+.|...++..
T Consensus 72 ~l~~l~~~~ipvV~~~~~ 89 (288)
T cd01538 72 AVEKAADAGIPVIAYDRL 89 (288)
T ss_pred HHHHHHHCCCCEEEECCC
Confidence 556666788999888764
No 96
>cd06343 PBP1_ABC_ligand_binding_like_8 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=51.51 E-value=78 Score=30.70 Aligned_cols=63 Identities=14% Similarity=0.265 Sum_probs=46.0
Q ss_pred ccccccccccHHHHHHHHHHHHhhhhCCCEEEEEcCCCCchhHHHHHHHHhhCCCeEEeC-CCCcc
Q 017886 255 EHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWID-SEKRI 319 (364)
Q Consensus 255 ~~~~v~nTIC~AT~~RQ~a~~eLa~~~vD~miVVGGknSSNT~rL~eia~~~~~~t~~Ie-~~~eL 319 (364)
-++.+.|+-++...-++ ++++|. ..-.+..|||+..|+.+.-+.+++++.+.|.+.-. +..++
T Consensus 48 i~l~~~D~~~~~~~a~~-~a~~li-~~~~v~avvG~~~s~~~~~~~~~~~~~~ip~i~~~~~~~~~ 111 (362)
T cd06343 48 IELIVEDDGYSPPKTVE-QTRKLV-ESDEVFAMVGGLGTPTNLAVQKYLNEKKVPQLFPASGASKW 111 (362)
T ss_pred EEEEEecCCCChHHHHH-HHHHHH-hhcCeEEEEecCCcHHHHHhHHHHHhcCCceEecccccHhh
Confidence 35667788776655554 556666 34567889999999999999999999998877643 33444
No 97
>cd07766 DHQ_Fe-ADH Dehydroquinate synthase-like (DHQ-like) and iron-containing alcohol dehydrogenases (Fe-ADH). Dehydroquinate synthase-like. This superfamily divides into two subgroups: the dehydroquinate synthase-like, and a large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. Dehydroquinate synthase-like group includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. The alcohol dehydrogenases in this superfamily contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alc
Probab=51.45 E-value=84 Score=30.78 Aligned_cols=87 Identities=17% Similarity=0.305 Sum_probs=54.3
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccccc---cHHHHHHHHHHHHhhhhCCCEEEEEcCCCCc
Q 017886 218 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTI---CDATQERQDAMYKMVEEKVDLILVVGGWNSS 294 (364)
Q Consensus 218 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~v~nTI---C~AT~~RQ~a~~eLa~~~vD~miVVGGknSS 294 (364)
+++.+|.-.......++.+.+.|++. . ++.+|+-+ |.-.. =++.+..+...++|++|-|||=..-
T Consensus 24 ~~~liv~~~~~~~~~~~~v~~~l~~~-~----------~~~~~~~~~~~p~~~~-v~~~~~~~~~~~~d~IIaiGGGs~~ 91 (332)
T cd07766 24 DRALVVSDEGVVKGVGEKVADSLKKL-I----------AVHIFDGVGPNPTFEE-VKEAVERARAAEVDAVIAVGGGSTL 91 (332)
T ss_pred CeEEEEeCCchhhhHHHHHHHHHHhc-C----------cEEEeCCcCCCcCHHH-HHHHHHHHHhcCcCEEEEeCCchHH
Confidence 47888886655555566666666541 0 11222211 22222 2233333333479999999999999
Q ss_pred hhHHHHHHHHhhCCCeEEeCCC
Q 017886 295 NTSHLQEIAEDRGIPSYWIDSE 316 (364)
Q Consensus 295 NT~rL~eia~~~~~~t~~Ie~~ 316 (364)
.+-|.+-.....+.|-+.|-|.
T Consensus 92 D~aK~ia~~~~~~~p~i~iPTt 113 (332)
T cd07766 92 DTAKAVAALLNRGLPIIIVPTT 113 (332)
T ss_pred HHHHHHHHHhcCCCCEEEEeCC
Confidence 9999987776568888888764
No 98
>cd06309 PBP1_YtfQ_like Periplasmic binding domain of ABC-type YtfQ-like transport systems. Periplasmic binding domain of ABC-type YtfQ-like transport systems. The YtfQ protein from Escherichia coli is up-regulated under glucose-limited conditions and shares homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their ligand specificity is not determined experimentally.
Probab=51.44 E-value=89 Score=28.67 Aligned_cols=80 Identities=16% Similarity=0.180 Sum_probs=45.6
Q ss_pred CChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHH-HHHHHhhhhCCCEEEEEcCCCCchhHHHHHHHHhh
Q 017886 228 MLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDR 306 (364)
Q Consensus 228 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ-~a~~eLa~~~vD~miVVGGknSSNT~rL~eia~~~ 306 (364)
++-.-|.++.+.+.+...++ +-++.+++ +....+.| +.++.|.+..+|.+|+.+. ++.....+++.+.+.
T Consensus 9 ~~~~~~~~~~~~~~~~a~~~------g~~~~~~~--~~~~~~~~~~~i~~l~~~~vdgiIi~~~-~~~~~~~~i~~~~~~ 79 (273)
T cd06309 9 AESPWRTAETKSIKDAAEKR------GFDLKFAD--AQQKQENQISAIRSFIAQGVDVIILAPV-VETGWDPVLKEAKAA 79 (273)
T ss_pred CCCHHHHHHHHHHHHHHHhc------CCEEEEeC--CCCCHHHHHHHHHHHHHcCCCEEEEcCC-ccccchHHHHHHHHC
Confidence 34445566766666543322 12233322 22233444 4555665578999998653 333324456667788
Q ss_pred CCCeEEeCCC
Q 017886 307 GIPSYWIDSE 316 (364)
Q Consensus 307 ~~~t~~Ie~~ 316 (364)
+.|...+.+.
T Consensus 80 ~iPvV~~~~~ 89 (273)
T cd06309 80 GIPVILVDRG 89 (273)
T ss_pred CCCEEEEecC
Confidence 8999999875
No 99
>PLN03028 pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=51.08 E-value=26 Score=38.29 Aligned_cols=53 Identities=15% Similarity=0.240 Sum_probs=36.1
Q ss_pred HHHHHHHHHhhhhCCCEEEEEcCCCCc-hhHHHHHHHHhhCCCeEEeCCCCccC
Q 017886 268 QERQDAMYKMVEEKVDLILVVGGWNSS-NTSHLQEIAEDRGIPSYWIDSEKRIG 320 (364)
Q Consensus 268 ~~RQ~a~~eLa~~~vD~miVVGGknSS-NT~rL~eia~~~~~~t~~Ie~~~eL~ 320 (364)
.+++++++-|-+-..|.+|+|||-.|. +..+|+|-+++.+.+.--|.=+.-||
T Consensus 160 e~~~~i~e~l~~l~Id~LvvIGGddS~~~A~~Lae~~~~~~~~i~VIGIPKTID 213 (610)
T PLN03028 160 EQVNAALAACEALKLDGLVIIGGVTSNTDAAQLAETFAEAKCKTKVVGVPVTLN 213 (610)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHHcCCCceEEEeceeee
Confidence 366666666655679999999999987 55689998887743333333333343
No 100
>cd08188 Fe-ADH4 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=51.05 E-value=63 Score=32.66 Aligned_cols=79 Identities=18% Similarity=0.258 Sum_probs=48.2
Q ss_pred ceEEEEEcCCCChH-HHHHHHHHHHHHHhhhcccccccccccccccccH-HHHHHHHHHHHhh-hhCCCEEEEEcCCCCc
Q 017886 218 VKVGIANQTTMLKG-ETEEIGKLVEKTMMRKFGVENVNEHFISFNTICD-ATQERQDAMYKMV-EEKVDLILVVGGWNSS 294 (364)
Q Consensus 218 ~kv~vvsQTT~~~~-~~~~i~~~l~~~~~~~~~~~~~~~~~~v~nTIC~-AT~~RQ~a~~eLa-~~~vD~miVVGGknSS 294 (364)
+++.+|....+... .++++.+.|+. . +.++.+|+.+|. .|.+-=.++.+++ ..++|++|-|||=.+-
T Consensus 29 ~~~livt~~~~~~~~~~~~v~~~L~~----~------~~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~d~IIaiGGGsvi 98 (377)
T cd08188 29 KKVLLVSDPGVIKAGWVDRVIESLEE----A------GLEYVVFSDVSPNPRDEEVMAGAELYLENGCDVIIAVGGGSPI 98 (377)
T ss_pred CeEEEEeCcchhhCccHHHHHHHHHH----c------CCeEEEeCCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCCchHH
Confidence 58888877655432 35666666653 1 123456666653 3333222222332 3579999999999999
Q ss_pred hhHHHHHHHHhh
Q 017886 295 NTSHLQEIAEDR 306 (364)
Q Consensus 295 NT~rL~eia~~~ 306 (364)
.+-|..-+....
T Consensus 99 D~AK~ia~~~~~ 110 (377)
T cd08188 99 DCAKGIGIVASN 110 (377)
T ss_pred HHHHHHHHHHHC
Confidence 999987765443
No 101
>TIGR01481 ccpA catabolite control protein A. Catabolite control protein A is a LacI family global transcriptional regulator found in Gram-positive bacteria. CcpA is involved in repressing carbohydrate utilization genes [ex: alpha-amylase (amyE), acetyl-coenzyme A synthase (acsA)] and in activating genes involved in transporting excess carbon from the cell [ex: acetate kinase (ackA), alpha-acetolactate synthase (alsS)]. Additionally, disruption of CcpA in Bacillus megaterium, Staphylococcus xylosus, Lactobacillus casei and Lactocacillus pentosus also decreases growth rate, which suggests CcpA is involved in the regulation of other metabolic pathways.
Probab=50.89 E-value=2.1e+02 Score=27.18 Aligned_cols=125 Identities=16% Similarity=0.197 Sum_probs=63.5
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHHHH-HHHhhhhCCCEEEEEcCCCCchh
Q 017886 218 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDA-MYKMVEEKVDLILVVGGWNSSNT 296 (364)
Q Consensus 218 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ~a-~~eLa~~~vD~miVVGGknSSNT 296 (364)
..|+++... ++-.-|.++...+.+...+. + -++.+.+ +....++|.. ++.|....+|.+|+++...+
T Consensus 60 ~~Igvv~~~-~~~~f~~~l~~~i~~~~~~~-g-----~~~~i~~--~~~~~~~~~~~~~~l~~~~vdGiIi~~~~~~--- 127 (329)
T TIGR01481 60 TTVGVIIPD-ISNIYYAELARGIEDIATMY-K-----YNIILSN--SDEDPEKEVQVLNTLLSKQVDGIIFMGGTIT--- 127 (329)
T ss_pred CEEEEEeCC-CCchhHHHHHHHHHHHHHHc-C-----CEEEEEe--CCCCHHHHHHHHHHHHhCCCCEEEEeCCCCC---
Confidence 468888765 33455777777776533222 1 1222221 1222344433 34454468999999875322
Q ss_pred HHHHHHHHhhCCCeEEeCCCCccCCCCcchhhh-ccchhhhhcccCCCCCCEEEEEeCCC
Q 017886 297 SHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKL-MHGELVEKENWLPKGQITIGITSGAS 355 (364)
Q Consensus 297 ~rL~eia~~~~~~t~~Ie~~~eL~~~~~~~~~~-~~~~~~~~~~wl~~~~~~VGITAGAS 355 (364)
..+.+...+.+.|..++.+..+-.....+.... ..+..-.. ..+..|.++||+-+|.+
T Consensus 128 ~~~~~~l~~~~iPvV~~~~~~~~~~~~~V~~D~~~~~~~a~~-~L~~~G~~~I~~i~g~~ 186 (329)
T TIGR01481 128 EKLREEFSRSPVPVVLAGTVDKENELPSVNIDYKQATKEAVG-ELIAKGHKSIAFVGGPL 186 (329)
T ss_pred hHHHHHHHhcCCCEEEEecCCCCCCCCEEEECcHHHHHHHHH-HHHHCCCCeEEEEecCc
Confidence 334555566789999887643211100011000 11111111 12224789999987754
No 102
>cd01574 PBP1_LacI Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of LacI is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=50.88 E-value=1.4e+02 Score=27.04 Aligned_cols=87 Identities=14% Similarity=0.211 Sum_probs=47.8
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHH-HHHHHhhhhCCCEEEEEcCCCCchhHH
Q 017886 220 VGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSNTSH 298 (364)
Q Consensus 220 v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ-~a~~eLa~~~vD~miVVGGknSSNT~r 298 (364)
|+++.++. +-.-|.++.+-+++...+. + -.+.++.+ ......+| +.+..|.+.++|.+|+.+...+.. .
T Consensus 2 i~vi~~~~-~~~~~~~~~~gi~~~~~~~-~-----~~~~~~~~-~~~~~~~~~~~~~~l~~~~vdgiii~~~~~~~~--~ 71 (264)
T cd01574 2 IGVVTTDL-ALHGPSSTLAAIESAAREA-G-----YAVTLSML-AEADEEALRAAVRRLLAQRVDGVIVNAPLDDAD--A 71 (264)
T ss_pred EEEEeCCC-CcccHHHHHHHHHHHHHHC-C-----CeEEEEeC-CCCchHHHHHHHHHHHhcCCCEEEEeCCCCChH--H
Confidence 56777653 3345666776666532222 1 12222211 11112344 345556556899999988755554 3
Q ss_pred HHHHHHhhCCCeEEeCCCC
Q 017886 299 LQEIAEDRGIPSYWIDSEK 317 (364)
Q Consensus 299 L~eia~~~~~~t~~Ie~~~ 317 (364)
+.+ ..+.|.|...+++..
T Consensus 72 ~~~-~~~~~ipvv~~~~~~ 89 (264)
T cd01574 72 ALA-AAPADVPVVFVDGSP 89 (264)
T ss_pred HHH-HHhcCCCEEEEeccC
Confidence 333 346789999998764
No 103
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=50.67 E-value=22 Score=27.79 Aligned_cols=41 Identities=15% Similarity=0.141 Sum_probs=27.7
Q ss_pred HHHHHHHhcCCcE-EeccCchhHHHHHHHHHHhhCCCe-EEEEecC
Q 017886 110 EEMVTLNNKNVQI-VDTTCPWVSKVWTSVEKHKKGDYT-SIIHGKY 153 (364)
Q Consensus 110 ~v~~~l~~~g~~i-iDaTCP~V~kv~~~v~~~~~~Gy~-iIIiG~~ 153 (364)
++.+.|++.|+.+ +|-. -.++-+..+...+.|+. ++|+|+.
T Consensus 22 ~la~~Lr~~g~~v~~d~~---~~~l~k~i~~a~~~g~~~~iiiG~~ 64 (94)
T cd00861 22 KLYAELQAAGVDVLLDDR---NERPGVKFADADLIGIPYRIVVGKK 64 (94)
T ss_pred HHHHHHHHCCCEEEEECC---CCCcccchhHHHhcCCCEEEEECCc
Confidence 4567777778777 5544 34667777777788887 6667744
No 104
>cd06302 PBP1_LsrB_Quorum_Sensing Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs. Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs from other bacteria. The members of this group are homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transporters of many sugar based solutes in bacteria and archaea and that are a member of the type I periplasmic binding protein superfamily. LsrB binds a chemically distinct form of the AI-2 signal that lacks boron, in contrast to the Vibrio harveyi AI-2 signaling molecule that has an unusual furanosyl borate diester. Hence, many bacteria coordinate their gene expression according to the local density of their population by producing species specific AI-2. This process of quorum sensing allows LsrB to function as a periplasmic AI-2 binding p
Probab=50.35 E-value=1.5e+02 Score=28.07 Aligned_cols=87 Identities=17% Similarity=0.145 Sum_probs=49.4
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccc-cccccHHHHHHH-HHHHHhhhhCCCEEEEEcCCCCchhH
Q 017886 220 VGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFIS-FNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSNTS 297 (364)
Q Consensus 220 v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~v-~nTIC~AT~~RQ-~a~~eLa~~~vD~miVVGGknSSNT~ 297 (364)
|+++.- +++-.-|..+.+.+.+...+ ++. .+.+ .+ +....+.| +.++.+...++|.+|+.+ .+++...
T Consensus 2 I~vi~~-~~~~~f~~~i~~gi~~~a~~-~g~-----~v~~~~~--~~~d~~~~~~~i~~~~~~~~DgiIi~~-~~~~~~~ 71 (298)
T cd06302 2 IAFVPK-VTGIPYFNRMEEGAKEAAKE-LGV-----DAIYVGP--TTADAAGQVQIIEDLIAQGVDAIAVVP-NDPDALE 71 (298)
T ss_pred EEEEEc-CCCChHHHHHHHHHHHHHHH-hCC-----eEEEECC--CCCCHHHHHHHHHHHHhcCCCEEEEec-CCHHHHH
Confidence 455553 24445677777777664332 221 1221 11 12223444 444445446899999985 4455445
Q ss_pred HHHHHHHhhCCCeEEeCCC
Q 017886 298 HLQEIAEDRGIPSYWIDSE 316 (364)
Q Consensus 298 rL~eia~~~~~~t~~Ie~~ 316 (364)
.+++-+++.+.|...+.+.
T Consensus 72 ~~~~~~~~~~iPvV~v~~~ 90 (298)
T cd06302 72 PVLKKAREAGIKVVTHDSD 90 (298)
T ss_pred HHHHHHHHCCCeEEEEcCC
Confidence 6666677888999888864
No 105
>cd06304 PBP1_BmpA_like Periplasmic binding component of a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. Periplasmic binding component of a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. These outer membrane proteins include Med, a cell-surface localized protein regulating the competence transcription factor gene comK in Bacillus subtilis, and PnrA, a periplasmic purine nucleoside binding protein of an ATP-binding cassette (ABC) transport system in Treponema pallidum. All contain the type I periplasmic sugar-binding protein-like fold.
Probab=49.79 E-value=1.5e+02 Score=27.33 Aligned_cols=86 Identities=14% Similarity=0.090 Sum_probs=47.5
Q ss_pred EEEEEcC-CCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHH-HHHHHhhhhCCCEEEEEcCCCCchhH
Q 017886 220 VGIANQT-TMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSNTS 297 (364)
Q Consensus 220 v~vvsQT-T~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ-~a~~eLa~~~vD~miVVGGknSSNT~ 297 (364)
|+++.-. +++-.-|..+.+-+.+...+. +-++.+.++- . .++| +.++.|....+|.+|+++.. ...
T Consensus 2 Igvi~~~~~~~~~f~~~l~~gi~~~~~~~------gy~~~~~~~~-~--~~~~~~~~~~l~~~~vdgiii~~~~---~~~ 69 (260)
T cd06304 2 VALVYDGGGGDKSFNQSAYEGLEKAEKEL------GVEVKYVESV-E--DADYEPNLRQLAAQGYDLIFGVGFG---FMD 69 (260)
T ss_pred EEEEecCCCCcchHHHHHHHHHHHHHHhc------CceEEEEecC-C--HHHHHHHHHHHHHcCCCEEEECCcc---hhH
Confidence 5555442 455567777877776642222 1234443332 2 2344 34455554579999997522 234
Q ss_pred HHHHHHHhh-CCCeEEeCCCC
Q 017886 298 HLQEIAEDR-GIPSYWIDSEK 317 (364)
Q Consensus 298 rL~eia~~~-~~~t~~Ie~~~ 317 (364)
.+.+..++. +.|...+++..
T Consensus 70 ~~~~~~~~~~~ipvv~~~~~~ 90 (260)
T cd06304 70 AVEKVAKEYPDVKFAIIDGVV 90 (260)
T ss_pred HHHHHHHHCCCCEEEEecCcc
Confidence 555665543 56888887643
No 106
>cd06355 PBP1_FmdD_like Periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF). This group includes the periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF), found in Methylophilus methylotrophus, and its homologs from other bacteria. FmdD, a type I periplasmic binding protein, is induced by short-chain amides and urea and repressed by excess ammonia, while FmdE and FmdF are hydrophobic transmembrane proteins. FmdDEF is predicted to be an ATP-dependent transporter and closely resembles the periplasmic binding protein and the two transmembrane proteins present in various hydrophobic amino acid-binding transport systems.
Probab=49.49 E-value=22 Score=34.80 Aligned_cols=54 Identities=13% Similarity=0.120 Sum_probs=40.9
Q ss_pred ccccccccccHHHHHHHHHHHHhhhhCCCEEEEEcCCCCchhHHHHHHHHhhCCCe
Q 017886 255 EHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPS 310 (364)
Q Consensus 255 ~~~~v~nTIC~AT~~RQ~a~~eLa~~~vD~miVVGGknSSNT~rL~eia~~~~~~t 310 (364)
-++.+.||-++++.-. +++++|. .+-.+.+|+|+..|+.+..+..++.+.+.+.
T Consensus 41 ielv~~D~~~~p~~a~-~~a~~Li-~~~~V~~iiG~~~S~~~~a~~~~~~~~~~~~ 94 (348)
T cd06355 41 IEAVVEDGASDWPTFA-EKARKLL-TQDKVAAVFGCWTSASRKAVLPVFERHNGLL 94 (348)
T ss_pred EEEEEeCCCCCHHHHH-HHHHHHH-HhCCCcEEEeccchhhHHHHHHHHhccCCce
Confidence 3567889999887666 4555665 2345677789999999999999999887553
No 107
>COG0276 HemH Protoheme ferro-lyase (ferrochelatase) [Coenzyme metabolism]
Probab=49.39 E-value=39 Score=34.10 Aligned_cols=91 Identities=14% Similarity=0.086 Sum_probs=55.9
Q ss_pred CCCCcccHHHHHHHHHHHHhhCCC-CceEEecccccCHHHHHHHHHcCcEEecCCcccccccccc-CCCEEEEcCCCCCH
Q 017886 32 SYGFCWGVERAVQIAYEARKQFPE-EKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVN-KGDVVVLPAFGAAV 109 (364)
Q Consensus 32 ~~GFC~GV~RAi~~a~~~~~~~~~-~~vy~lG~iIHN~~Vv~~L~~~Gv~~v~~~~~~~~~~~l~-~g~~VIIrAHGv~~ 109 (364)
|--=|+-+--+++.+.+++++.+. .++-+..+-=-+|--++.|.+. |.+ .+.+.+ +++.+|++|||+|.
T Consensus 126 PqyS~sTt~s~~~~~~~al~~~~~~~~i~~I~~~~~~p~yI~a~a~~----I~~-----~~~~~~~~~~~llfSaHglP~ 196 (320)
T COG0276 126 PQYSSSTTGSYVDELARALKELRGQPKISTIPDYYDEPLYIEALADS----IRE-----KLAKHPRDDDVLLFSAHGLPK 196 (320)
T ss_pred cccccccHHHHHHHHHHHHHhcCCCCceEEecCccCChHHHHHHHHH----HHH-----HHHhcCCCCeEEEEecCCCch
Confidence 444466777777777776654322 2466666665666666666543 221 233333 46789999999998
Q ss_pred HHHHHHHhcCCcEEeccCchhHHHHHHHHHHhh
Q 017886 110 EEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKK 142 (364)
Q Consensus 110 ~v~~~l~~~g~~iiDaTCP~V~kv~~~v~~~~~ 142 (364)
...++ | =|+-..++..++...+
T Consensus 197 ~~~~~----G-------DpY~~q~~~t~~li~e 218 (320)
T COG0276 197 RYIDE----G-------DPYPQQCQETTRLIAE 218 (320)
T ss_pred hhhhc----C-------CchHHHHHHHHHHHHH
Confidence 76543 2 2577777777776655
No 108
>cd06354 PBP1_BmpA_PnrA_like Periplasmic binding domain of basic membrane lipoprotein, PnrA, in Treponema pallidum and its homologs from other bacteria and Archaea. Periplasmic binding domain of basic membrane lipoprotein, PnrA, in Treponema pallidum and its homologs from other bacteria and Archaea. The PnrA lipoprotein, also known as Tp0319 or TmpC, represents a novel family of bacterial purine nucleoside receptor encoded within an ATP-binding cassette (ABC) transport system (pnrABCDE). It shows a striking structural similarity to another basic membrane lipoprotein Med which regulates the competence transcription factor gene, comK, in Bacillus subtilis. The members of PnrA-like subgroup are likely to have similar nucleoside-binding functions and a similar type I periplasmic sugar-binding protein-like fold.
Probab=49.30 E-value=1.5e+02 Score=27.63 Aligned_cols=115 Identities=16% Similarity=0.097 Sum_probs=61.2
Q ss_pred CChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHHHHHHHhhhhCCCEEEEEcCCCCchhHHHHHHHHhh-
Q 017886 228 MLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDR- 306 (364)
Q Consensus 228 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ~a~~eLa~~~vD~miVVGGknSSNT~rL~eia~~~- 306 (364)
.+-.-|.++++-+.+...+. + -++.+.++- +. ...++.++.|....+|.+|+.+.. ++..+.++.++.
T Consensus 12 ~~~~f~~~~~~gi~~~~~~~-g-----y~~~i~~~~-~~-~~~~~~i~~l~~~~vdgiI~~~~~---~~~~~~~~~~~~~ 80 (265)
T cd06354 12 GDKSFNQSAWEGLERAAKEL-G-----IEYKYVESK-SD-ADYEPNLEQLADAGYDLIVGVGFL---LADALKEVAKQYP 80 (265)
T ss_pred CchhHHHHHHHHHHHHHHHc-C-----CeEEEEecC-CH-HHHHHHHHHHHhCCCCEEEEcCcc---hHHHHHHHHHHCC
Confidence 44566777777776543322 1 223333332 22 334566777776799999998743 233455666554
Q ss_pred CCCeEEeCCCCcc-CCCCcchhhh-ccchhhhhcccCC--CCCCEEEEEeCCC
Q 017886 307 GIPSYWIDSEKRI-GPGNKIAYKL-MHGELVEKENWLP--KGQITIGITSGAS 355 (364)
Q Consensus 307 ~~~t~~Ie~~~eL-~~~~~~~~~~-~~~~~~~~~~wl~--~~~~~VGITAGAS 355 (364)
+.|...++...+- +.-..+.+.. ..+..-. ..+. .|+++||+-+|..
T Consensus 81 ~~PiV~i~~~~~~~~~~~~v~~d~~~a~~~a~--~ll~~~~G~~~I~~i~~~~ 131 (265)
T cd06354 81 DQKFAIIDAVVDDPPNVASIVFKEEEGSFLAG--YLAALMTKTGKVGFIGGMD 131 (265)
T ss_pred CCEEEEEecccCCCCcEEEEEecchhHHHHHH--HHHHhhcCCCeEEEEeccc
Confidence 6788888874332 2111121111 1111110 1121 2889999998754
No 109
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=49.00 E-value=52 Score=30.10 Aligned_cols=32 Identities=19% Similarity=0.133 Sum_probs=25.8
Q ss_pred EEEcCCCCCHHHHHHHHhcCCcEEeccCchhHHHHHHHHHHhhCCCeEEEEecC
Q 017886 100 VVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKY 153 (364)
Q Consensus 100 VIIrAHGv~~~v~~~l~~~g~~iiDaTCP~V~kv~~~v~~~~~~Gy~iIIiG~~ 153 (364)
=|++||=.|...++.+ +...++|+.+||-|--
T Consensus 35 ~VvSAHRTPe~m~~ya----------------------~~a~~~g~~viIAgAG 66 (162)
T COG0041 35 RVVSAHRTPEKMFEYA----------------------EEAEERGVKVIIAGAG 66 (162)
T ss_pred EEEeccCCHHHHHHHH----------------------HHHHHCCCeEEEecCc
Confidence 4699999998887766 4567899999999843
No 110
>cd01540 PBP1_arabinose_binding Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. ABP is only involved in transport contrary to other related sugar-binding proteins such as the glucose/galactose-binding protein (GGBP) and the ribose-binding protein (RBP), both of which are involved in chemotaxis as well as transport. The periplasmic ABP consists of two alpha/beta globular domains connected by a three-stranded hinge, a Venus flytrap-like domain, which undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, ABP is homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR) and DNA-binding transcriptional repressors such a
Probab=48.98 E-value=1.3e+02 Score=27.84 Aligned_cols=86 Identities=10% Similarity=0.035 Sum_probs=47.3
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHH-HHHHHhhhhCCCEEEEEcCCCCchhHH
Q 017886 220 VGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSNTSH 298 (364)
Q Consensus 220 v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ-~a~~eLa~~~vD~miVVGGknSSNT~r 298 (364)
|+++.-+ ++-.-|..+.+-+.+...+. +-.+.+.++- + .++| +.++.+...++|.+|+.+.- +.-...
T Consensus 2 Ig~v~~~-~~~~~~~~~~~gi~~~~~~~------g~~~~~~~~~-~--~~~~~~~i~~~~~~~~dgiii~~~~-~~~~~~ 70 (289)
T cd01540 2 IGFIVKQ-PEEPWFQTEWKFAKKAAKEK------GFTVVKIDVP-D--GEKVLSAIDNLGAQGAKGFVICVPD-VKLGPA 70 (289)
T ss_pred eeeecCC-CCCcHHHHHHHHHHHHHHHc------CCEEEEccCC-C--HHHHHHHHHHHHHcCCCEEEEccCc-hhhhHH
Confidence 4444422 33334556665555432221 2234444332 2 3444 45555554679999998743 333355
Q ss_pred HHHHHHhhCCCeEEeCCC
Q 017886 299 LQEIAEDRGIPSYWIDSE 316 (364)
Q Consensus 299 L~eia~~~~~~t~~Ie~~ 316 (364)
+++.+++.+.|...+.+.
T Consensus 71 ~~~~~~~~~iPvV~~~~~ 88 (289)
T cd01540 71 IVAKAKAYNMKVVAVDDR 88 (289)
T ss_pred HHHHHHhCCCeEEEecCC
Confidence 666777889999888753
No 111
>PRK00035 hemH ferrochelatase; Reviewed
Probab=48.96 E-value=2e+02 Score=28.49 Aligned_cols=85 Identities=12% Similarity=0.114 Sum_probs=48.9
Q ss_pred HHHHHHHHHHhhCC-CCceEEecccccCHHHHHHHHHcCcEEecCCccccccccccCCCEEEEcCCCCCHHHHHHHHhcC
Q 017886 41 RAVQIAYEARKQFP-EEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKN 119 (364)
Q Consensus 41 RAi~~a~~~~~~~~-~~~vy~lG~iIHN~~Vv~~L~~~Gv~~v~~~~~~~~~~~l~~g~~VIIrAHGv~~~v~~~l~~~g 119 (364)
...+.+.+++++++ ..++.+..++=.+|..++.+.++=-..++. ...-.+++.|||.+||+|.... ++|
T Consensus 138 s~~~~i~~~~~~~~~~~~i~~i~~~~~~p~~i~~l~~~I~~~~~~------~~~~~~~~~llfs~HG~P~~~~----~~g 207 (333)
T PRK00035 138 SYFEDLARALAKLRLQPEIRFIRSYYDHPGYIEALAESIREALAK------HGEDPEPDRLLFSAHGLPQRYI----DKG 207 (333)
T ss_pred HHHHHHHHHHHhcCCCCcEEEeCCccCCHHHHHHHHHHHHHHHHh------cCcccCCcEEEEecCCCchHHh----hcC
Confidence 33444555555443 235667777777787777665542211211 1000034689999999997754 223
Q ss_pred CcEEeccCchhHHHHHHHHHHhh
Q 017886 120 VQIVDTTCPWVSKVWTSVEKHKK 142 (364)
Q Consensus 120 ~~iiDaTCP~V~kv~~~v~~~~~ 142 (364)
-|+-..+++.++.+.+
T Consensus 208 -------d~Y~~~~~~t~~~l~~ 223 (333)
T PRK00035 208 -------DPYQQQCEETARLLAE 223 (333)
T ss_pred -------CChHHHHHHHHHHHHH
Confidence 4577777777766654
No 112
>PF15498 Dendrin: Nephrin and CD2AP-binding protein, Dendrin
Probab=48.94 E-value=3.7 Score=43.10 Aligned_cols=33 Identities=15% Similarity=0.133 Sum_probs=28.0
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCcEEeccCchhH
Q 017886 99 VVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVS 131 (364)
Q Consensus 99 ~VIIrAHGv~~~v~~~l~~~g~~iiDaTCP~V~ 131 (364)
..-=|||-++..-.--+...|+.||||||-..+
T Consensus 378 K~trRaHTlPRssrgpa~geGvFVIDATCVVIr 410 (657)
T PF15498_consen 378 KETRRAHTLPRSSRGPARGEGVFVIDATCVVIR 410 (657)
T ss_pred ccccccccCCcccCCCCCCCceEEEeeeEEEEe
Confidence 456799999988888889999999999996543
No 113
>PTZ00287 6-phosphofructokinase; Provisional
Probab=48.58 E-value=29 Score=41.32 Aligned_cols=55 Identities=11% Similarity=0.124 Sum_probs=41.1
Q ss_pred HHHHHHHHHHhhhhCCCEEEEEcCCCCc-hhHHHHHHHHhhCCCeEEeCCCCccCC
Q 017886 267 TQERQDAMYKMVEEKVDLILVVGGWNSS-NTSHLQEIAEDRGIPSYWIDSEKRIGP 321 (364)
Q Consensus 267 T~~RQ~a~~eLa~~~vD~miVVGGknSS-NT~rL~eia~~~~~~t~~Ie~~~eL~~ 321 (364)
...|+++++.|-.-.+|.+|||||-.|- +...|+|-+++.|.++--|.=+.-||-
T Consensus 914 ~e~~~ka~~~lk~l~ID~LVvIGGDgS~t~A~~LaE~f~~~gi~i~VIGVPkTIDN 969 (1419)
T PTZ00287 914 KENRNKVCETVTNLQLNGLVMPGSNVTITEAALLAEYFLEKKIPTSVVGIPLTGSN 969 (1419)
T ss_pred HHHHHHHHHHHHHhCCCEEEEECCchHHHHHHHHHHHHHhcCCCccEEEeCceeeC
Confidence 4578888877766689999999999887 566899988888888444444554543
No 114
>PLN02884 6-phosphofructokinase
Probab=48.54 E-value=27 Score=36.32 Aligned_cols=45 Identities=11% Similarity=0.297 Sum_probs=35.6
Q ss_pred HHHHHHHHhhhhCCCEEEEEcCCCCchhH-HHHHHHHhhC--CCeEEe
Q 017886 269 ERQDAMYKMVEEKVDLILVVGGWNSSNTS-HLQEIAEDRG--IPSYWI 313 (364)
Q Consensus 269 ~RQ~a~~eLa~~~vD~miVVGGknSSNT~-rL~eia~~~~--~~t~~I 313 (364)
.++++++.|-...+|.+|||||-.|-.+- +|.+-|++.| .+...|
T Consensus 131 ~~~~i~~~L~~~~Id~LivIGGdgS~~~a~~L~~~~~~~g~~i~vIGI 178 (411)
T PLN02884 131 KTSDIVDSIEARGINMLFVLGGNGTHAGANAIHNECRKRKMKVSVVGV 178 (411)
T ss_pred cHHHHHHHHHHcCCCEEEEECCchHHHHHHHHHHHHHHcCCCceEEec
Confidence 47778888866789999999999998765 7888888877 555554
No 115
>COG1494 GlpX Fructose-1,6-bisphosphatase/sedoheptulose 1,7-bisphosphatase and related proteins [Carbohydrate transport and metabolism]
Probab=48.43 E-value=12 Score=37.54 Aligned_cols=42 Identities=17% Similarity=0.342 Sum_probs=33.7
Q ss_pred CHHHHHHHHHcCcEEecCCccccccccccCCCEEEEcCCCCCHHHH
Q 017886 67 NPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEM 112 (364)
Q Consensus 67 N~~Vv~~L~~~Gv~~v~~~~~~~~~~~l~~g~~VIIrAHGv~~~v~ 112 (364)
+++.+.+++++|+ -+ ++.-.++++-.|+.|||.|-||++-.+
T Consensus 248 ~~~e~~R~~~mGi-d~---~~vl~ledlv~gd~viFaATGvT~G~l 289 (332)
T COG1494 248 GEEERARCKAMGI-DV---NKVLSLEDLVRGDNVIFAATGVTDGDL 289 (332)
T ss_pred cHHHHHHHHHhCC-Ch---hheeeHHHhcCCCceEEEeccCcCcch
Confidence 7889999999999 22 223467888889999999999998643
No 116
>KOG2882 consensus p-Nitrophenyl phosphatase [Inorganic ion transport and metabolism]
Probab=48.40 E-value=52 Score=33.05 Aligned_cols=28 Identities=14% Similarity=0.205 Sum_probs=22.1
Q ss_pred CCCceEEecccccCHHHHHHHHHcCcEEecCC
Q 017886 54 PEEKIWITNEIIHNPTVNKRLEEMAVQNIPVE 85 (364)
Q Consensus 54 ~~~~vy~lG~iIHN~~Vv~~L~~~Gv~~v~~~ 85 (364)
.+++||++|.-- ..+.|++.|+......
T Consensus 105 ~~k~Vyvig~~g----i~~eL~~aG~~~~g~~ 132 (306)
T KOG2882|consen 105 FGKKVYVIGEEG----IREELDEAGFEYFGGG 132 (306)
T ss_pred CCCeEEEecchh----hhHHHHHcCceeecCC
Confidence 357899999864 5679999999987653
No 117
>cd06329 PBP1_SBP_like_3 Periplasmic solute-binding domain of active transport proteins. Periplasmic solute-binding domain of active transport proteins found in bacteria and Archaea. Members of this group are initial receptors in the process of active transport across cellular membrane, but their substrate specificities are not known in detail. However, they closely resemble the group of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus it may also be involved in transport of amino acids.
Probab=48.21 E-value=17 Score=35.17 Aligned_cols=56 Identities=14% Similarity=0.117 Sum_probs=41.6
Q ss_pred ccccccccccHHHHHHHHHHHHhhhhCCCEEEEEcCCCCchhHHH-------HHHHHhhCCCeEEe
Q 017886 255 EHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHL-------QEIAEDRGIPSYWI 313 (364)
Q Consensus 255 ~~~~v~nTIC~AT~~RQ~a~~eLa~~~vD~miVVGGknSSNT~rL-------~eia~~~~~~t~~I 313 (364)
-++.+.||=|+.+.-.+. +++|. .+ ++..|||+..|.++..+ ..++...+.|.+..
T Consensus 41 i~l~~~D~~~~p~~a~~~-a~~lv-~~-~v~aiiG~~~s~~~~~~~~~~~~~~~~~~~~~ip~i~~ 103 (342)
T cd06329 41 IELVEEDNKGSPQEALRK-AQKAI-DD-GVRLVVQGNSSSVALALTEAVRKHNQRNPGKEVLYLNY 103 (342)
T ss_pred EEEEeccCCCChHHHHHH-HHHHH-Hh-CCeEEEcccchHHHHHhhhhhhhhhhhhccCCeEEEec
Confidence 356788999998877754 55565 34 77889999999999999 66666666666544
No 118
>cd06382 PBP1_iGluR_Kainate N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the kainate receptors. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the kainate receptors, non-NMDA ionotropic receptors which respond to the neurotransmitter glutamate. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Kainate receptors have five subunits, GluR5, GluR6, GluR7, KA1, and KA2, which are structurally similar to AMPA and NMDA subunits of ionotropic glutamate receptors. KA1 and KA2 subunits can only form functional receptors with one of the GluR5-7 subunits. Moreover, GluR5-7 can also form functional homomeri
Probab=48.17 E-value=26 Score=33.58 Aligned_cols=53 Identities=15% Similarity=0.197 Sum_probs=38.0
Q ss_pred cccccc-cHHHHHHHHHHHHhhhhCCCEEEEEcCCCCchhHHHHHHHHhhCCCeEEe
Q 017886 258 ISFNTI-CDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWI 313 (364)
Q Consensus 258 ~v~nTI-C~AT~~RQ~a~~eLa~~~vD~miVVGGknSSNT~rL~eia~~~~~~t~~I 313 (364)
.+.|+- |++..- ..++.+|. .+ .+..|||+.+|+.+.-+..+|++.+.|-+..
T Consensus 40 ~~~d~~~~~~~~a-~~~~~~li-~~-~V~aiiG~~~S~~~~av~~~~~~~~vP~Is~ 93 (327)
T cd06382 40 DIKRVKPDDSFET-TKKVCDLL-QQ-GVAAIFGPSSSEASSIVQSICDAKEIPHIQT 93 (327)
T ss_pred EEEEecCCCcHHH-HHHhhhhh-hc-CcEEEECCCChhHHHHHHHHHhccCCCceec
Confidence 344544 444333 34456666 45 8899999999999999999999999886543
No 119
>cd00765 Pyrophosphate_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include pyrophosphate-dependent phosphofructokinases. These are found in bacteria as well as plants. These may be dimeric nonallosteric enzymes as in bacteria or allosteric heterotetramers as in plants.
Probab=48.00 E-value=32 Score=37.14 Aligned_cols=54 Identities=24% Similarity=0.315 Sum_probs=37.0
Q ss_pred HHHHHHHHHHhhhhCCCEEEEEcCCCCc-hhHHHHHHHHhhCCCeEEeCCCCccC
Q 017886 267 TQERQDAMYKMVEEKVDLILVVGGWNSS-NTSHLQEIAEDRGIPSYWIDSEKRIG 320 (364)
Q Consensus 267 T~~RQ~a~~eLa~~~vD~miVVGGknSS-NT~rL~eia~~~~~~t~~Ie~~~eL~ 320 (364)
..+++.+++.|-+-..|.+|+|||-.|. +..+|++-+++.|.+.-.|.=+.-||
T Consensus 152 ~e~~~~i~~~l~~~~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIGVPKTID 206 (550)
T cd00765 152 EDQFKQAEETAKKLDLDALVVIGGDDSNTNAALLAENFRSKGLKTRVIGVPKTID 206 (550)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHhcCCCceEEEEeeeec
Confidence 3456666666655679999999999886 55689999888874433344344444
No 120
>COG4821 Uncharacterized protein containing SIS (Sugar ISomerase) phosphosugar binding domain [General function prediction only]
Probab=47.79 E-value=56 Score=31.38 Aligned_cols=36 Identities=19% Similarity=0.299 Sum_probs=28.1
Q ss_pred ccccCCCEE-EEcCCC---CCHHHHHHHHhcCCcEEeccC
Q 017886 92 DVVNKGDVV-VLPAFG---AAVEEMVTLNNKNVQIVDTTC 127 (364)
Q Consensus 92 ~~l~~g~~V-IIrAHG---v~~~v~~~l~~~g~~iiDaTC 127 (364)
.++.+||++ ||+.-| +|-++-+.++++|..||=-|-
T Consensus 100 ~~i~~~DVliviSnSGrNpvpie~A~~~rekGa~vI~vTS 139 (243)
T COG4821 100 LQIRPNDVLIVISNSGRNPVPIEVAEYAREKGAKVIAVTS 139 (243)
T ss_pred hcCCCCCEEEEEeCCCCCCcchHHHHHHHhcCCeEEEEeh
Confidence 356678874 677777 466888999999999997774
No 121
>cd06337 PBP1_ABC_ligand_binding_like_4 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=47.00 E-value=31 Score=33.77 Aligned_cols=56 Identities=13% Similarity=0.210 Sum_probs=42.0
Q ss_pred cccccccccHHHHHHHHHHHHhhhhCCCEEEEEcCCCCchhHHHHHHHHhhCCCeEEe
Q 017886 256 HFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWI 313 (364)
Q Consensus 256 ~~~v~nTIC~AT~~RQ~a~~eLa~~~vD~miVVGGknSSNT~rL~eia~~~~~~t~~I 313 (364)
++.+.|+-+++..-. +++++|. .+=++.+|||+.+|+.+..+.+++.+.+.|.+--
T Consensus 44 ~lv~~D~~~~p~~a~-~~a~~li-~~d~v~~iiG~~~s~~~~a~~~~~~~~~ip~i~~ 99 (357)
T cd06337 44 EIIVRDSQSNPNRAG-LVAQELI-LTDKVDLLLAGGTPDTTNPVSDQCEANGVPCIST 99 (357)
T ss_pred EEEEecCCCCHHHHH-HHHHHHH-hccCccEEEecCCcchhhHHHHHHHHhCCCeEEe
Confidence 566889999887776 4566676 3334566679988888888899999998876543
No 122
>cd06348 PBP1_ABC_ligand_binding_like_13 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=46.97 E-value=32 Score=33.09 Aligned_cols=56 Identities=18% Similarity=0.221 Sum_probs=41.3
Q ss_pred cccccccccHHHHHHHHHHHHhhhhCCCEEEEEcCCCCchhHHHHHHHHhhCCCeEEe
Q 017886 256 HFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWI 313 (364)
Q Consensus 256 ~~~v~nTIC~AT~~RQ~a~~eLa~~~vD~miVVGGknSSNT~rL~eia~~~~~~t~~I 313 (364)
++.+.|+-|....-++ ++++|. .+-.+.+|+|+..|+.+.....++++.+.|.+.-
T Consensus 42 ~lv~~D~~~~p~~a~~-~~~~li-~~~~v~~iiG~~~s~~~~a~~~~~~~~~ip~i~~ 97 (344)
T cd06348 42 KLVIEDSGGDEAEAIN-AFQTLI-NKDRVLAIIGPTLSQQAFAADPIAERAGVPVVGP 97 (344)
T ss_pred EEEEecCCCChHHHHH-HHHHHh-hhcCceEEECCCCcHHHHhhhHHHHhCCCCEEec
Confidence 5678899998865555 455565 2334677789988888988899999988886543
No 123
>PRK14138 NAD-dependent deacetylase; Provisional
Probab=46.89 E-value=38 Score=32.40 Aligned_cols=58 Identities=16% Similarity=0.167 Sum_probs=40.4
Q ss_pred ccccccccccHHHHHHHHHHHHhhhhCCCEEEEEcCCCC-chhHHHHHHHHhhCCCeEEeCC
Q 017886 255 EHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNS-SNTSHLQEIAEDRGIPSYWIDS 315 (364)
Q Consensus 255 ~~~~v~nTIC~AT~~RQ~a~~eLa~~~vD~miVVGGknS-SNT~rL~eia~~~~~~t~~Ie~ 315 (364)
+++..|+.-=+. ...+++..++ .++|++||||-.-+ .-...|...++..|.+.+.|.-
T Consensus 155 P~Vv~FgE~~p~-~~~~~~~~~~--~~aDl~lviGTSl~V~pa~~l~~~~~~~g~~~i~iN~ 213 (244)
T PRK14138 155 PNIVFFGEALPQ-DALREAIRLS--SKASLMIVMGSSLVVYPAAELPLITVRSGGKLVIVNL 213 (244)
T ss_pred CCEEECCCcCCH-HHHHHHHHHH--hcCCEEEEeCcCCeeecHhHHHHHHHHcCCeEEEEcC
Confidence 567777773222 2344455444 47999999998633 5567888899999999887765
No 124
>cd06314 PBP1_tmGBP Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs. Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs from other bacteria. They are a member of the type I periplasmic binding protein superfamily which consists of two domains connected by a three-stranded hinge. TmGBP is specific for glucose and its binding pocket is buried at the interface of the two domains. TmGBP also exhibits high thermostability and the highest structural similarity to E. coli glucose binding protein (ecGBP).
Probab=46.63 E-value=1.6e+02 Score=27.00 Aligned_cols=86 Identities=15% Similarity=0.018 Sum_probs=46.1
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHHHH-HHHhhhhCCCEEEEEcCCCCchhHH
Q 017886 220 VGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDA-MYKMVEEKVDLILVVGGWNSSNTSH 298 (364)
Q Consensus 220 v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ~a-~~eLa~~~vD~miVVGGknSSNT~r 298 (364)
|+++.-. +-.-|.++..-+.+...+. + -++.++.+ .+...++|.. ++.|...++|.+|+.....++....
T Consensus 2 i~~v~~~--~~~~~~~~~~gi~~~~~~~-g-----~~~~~~~~-~~~~~~~~~~~i~~l~~~~vDgiIi~~~~~~~~~~~ 72 (271)
T cd06314 2 IAVVTNG--ASPFWKIAEAGVKAAGKEL-G-----VDVEFVVP-QQGTVNAQLRMLEDLIAEGVDGIAISPIDPKAVIPA 72 (271)
T ss_pred eEEEcCC--CcHHHHHHHHHHHHHHHHc-C-----CeEEEeCC-CCCCHHHHHHHHHHHHhcCCCEEEEecCChhHhHHH
Confidence 5666633 3455777777776533222 1 22333211 0123445533 4445456899999986443222334
Q ss_pred HHHHHHhhCCCeEEeCCC
Q 017886 299 LQEIAEDRGIPSYWIDSE 316 (364)
Q Consensus 299 L~eia~~~~~~t~~Ie~~ 316 (364)
|.++ .+ +.|...+++.
T Consensus 73 l~~~-~~-~ipvV~~~~~ 88 (271)
T cd06314 73 LNKA-AA-GIKLITTDSD 88 (271)
T ss_pred HHHH-hc-CCCEEEecCC
Confidence 4444 45 8899999864
No 125
>cd06340 PBP1_ABC_ligand_binding_like_6 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=46.42 E-value=36 Score=33.08 Aligned_cols=58 Identities=14% Similarity=0.222 Sum_probs=43.8
Q ss_pred cccccccccHHHHHHHHHHHHhhhhCCCEEEEEcCCCCchhHHHHHHHHhhCCCeEEeCC
Q 017886 256 HFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDS 315 (364)
Q Consensus 256 ~~~v~nTIC~AT~~RQ~a~~eLa~~~vD~miVVGGknSSNT~rL~eia~~~~~~t~~Ie~ 315 (364)
++.+.|+=|.+..-. +++++|. .+-++..|||+..|+.+..+..++.+.+.|......
T Consensus 45 ~lv~~D~~~~~~~a~-~~~~~li-~~~~v~aiiG~~~s~~~~a~~~~~~~~~ip~i~~~~ 102 (347)
T cd06340 45 ELVFGDSQGNPDIGA-TEAERLI-TEEGVVALVGAYQSAVTLAASQVAERYGVPFVVDGA 102 (347)
T ss_pred EEEEecCCCCHHHHH-HHHHHHh-ccCCceEEecccchHhHHHHHHHHHHhCCCEEeccc
Confidence 455667777665554 4567776 455788899999999999999999999888765543
No 126
>COG1358 RPL8A Ribosomal protein HS6-type (S12/L30/L7a) [Translation, ribosomal structure and biogenesis]
Probab=46.25 E-value=40 Score=29.10 Aligned_cols=51 Identities=22% Similarity=0.466 Sum_probs=41.4
Q ss_pred HHHHHHHHHhhhhCCCEEEEEcCCC-CchhHHHHHHHHhhCCCeEEeCCCCccCC
Q 017886 268 QERQDAMYKMVEEKVDLILVVGGWN-SSNTSHLQEIAEDRGIPSYWIDSEKRIGP 321 (364)
Q Consensus 268 ~~RQ~a~~eLa~~~vD~miVVGGkn-SSNT~rL~eia~~~~~~t~~Ie~~~eL~~ 321 (364)
.+=.+++++ ++..++++-.+-. .-.+.+|-.+|++++.|-.+|.|..+|-.
T Consensus 33 ~e~~Kai~~---g~a~LVviA~Dv~P~~~~~~l~~lc~~~~vpyv~V~sk~~LG~ 84 (116)
T COG1358 33 NEVTKAIER---GKAKLVVIAEDVSPEELVKHLPALCEEKNVPYVYVGSKKELGK 84 (116)
T ss_pred HHHHHHHHc---CCCcEEEEecCCCHHHHHHHHHHHHHhcCCCEEEeCCHHHHHH
Confidence 333444433 5789999999988 77888999999999999999999999963
No 127
>COG0761 lytB 4-Hydroxy-3-methylbut-2-enyl diphosphate reductase IspH [Lipid metabolism]
Probab=46.20 E-value=1.1e+02 Score=30.73 Aligned_cols=102 Identities=12% Similarity=0.119 Sum_probs=79.2
Q ss_pred HHHHHHHHhcCCc----EEeccCchhHHHHHHHHHHhhCCCeEEEEecCCCceeeeecccC----CcEEEEcChhhHHHh
Q 017886 109 VEEMVTLNNKNVQ----IVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFA----GKYIIVKNMKEAEYV 180 (364)
Q Consensus 109 ~~v~~~l~~~g~~----iiDaTCP~V~kv~~~v~~~~~~Gy~iIIiG~~~HpEv~gi~g~~----~~~~vv~~~~e~~~~ 180 (364)
.++.+.|++|.-. .-|.-|.--.+=|+.++.++.+-.-+|++|.++---..=+...+ ..++.|++++|++.
T Consensus 174 ~~Iv~~l~~r~p~~~~~~~~~ICyAT~nRQ~Avk~la~~~Dl~iVVG~~nSSNs~rL~eiA~~~g~~aylId~~~ei~~- 252 (294)
T COG0761 174 AEIVAALKERFPKIEVPPFNDICYATQNRQDAVKELAPEVDLVIVVGSKNSSNSNRLAEIAKRHGKPAYLIDDAEEIDP- 252 (294)
T ss_pred HHHHHHHHHhCccccCCcccccchhhhhHHHHHHHHhhcCCEEEEECCCCCccHHHHHHHHHHhCCCeEEeCChHhCCH-
Confidence 4567778887663 36778888899999999999999999999999876665554333 35899999999753
Q ss_pred hhhhcCCCCCCCCChHHHHHHHHHhhhcCCCCCCCCCceEEEEEcCCCChHHHHHHHHHHHH
Q 017886 181 CDYILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLVEK 242 (364)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kv~vvsQTT~~~~~~~~i~~~l~~ 242 (364)
+|+ . ....+|+.+=..-+..-.++++++|+.
T Consensus 253 ------------------------~w~----~---~~~~VGvTAGAStPd~lV~~Vi~~l~~ 283 (294)
T COG0761 253 ------------------------EWL----K---GVKTVGVTAGASTPDWLVQEVIAKLRE 283 (294)
T ss_pred ------------------------HHh----c---CccEEEEecCCCCCHHHHHHHHHHHHH
Confidence 111 0 125799999999999999999999876
No 128
>cd01539 PBP1_GGBP Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. GGBP is a member of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic GGBP is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=46.19 E-value=1.6e+02 Score=27.98 Aligned_cols=89 Identities=17% Similarity=0.239 Sum_probs=50.0
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHHHH-HHHhhhhCCCEEEEEcCCCCchhHH
Q 017886 220 VGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDA-MYKMVEEKVDLILVVGGWNSSNTSH 298 (364)
Q Consensus 220 v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ~a-~~eLa~~~vD~miVVGGknSSNT~r 298 (364)
|+++. ..++..-|..+.+-|.+..... + .+-.+.++++ +....+|.+ +..|...++|.+|+.+. ++.....
T Consensus 2 Igviv-~~~~~~~~~~~~~gi~~~a~~~-~---~g~~~~~~~~--~~~~~~q~~~i~~l~~~~vdgiii~~~-~~~~~~~ 73 (303)
T cd01539 2 IGVFL-YKFDDTFISLVRKNLEDIQKEN-G---GKVEFTFYDA--KNNQSTQNEQIDTALAKGVDLLAVNLV-DPTAAQT 73 (303)
T ss_pred eEEEe-eCCCChHHHHHHHHHHHHHHhh-C---CCeeEEEecC--CCCHHHHHHHHHHHHHcCCCEEEEecC-chhhHHH
Confidence 44443 2345555677776666532221 0 0112333332 345567755 44455578999998764 3333345
Q ss_pred HHHHHHhhCCCeEEeCCC
Q 017886 299 LQEIAEDRGIPSYWIDSE 316 (364)
Q Consensus 299 L~eia~~~~~~t~~Ie~~ 316 (364)
+++.+++.|.|...+++.
T Consensus 74 ~~~~~~~~giPvV~~~~~ 91 (303)
T cd01539 74 VINKAKQKNIPVIFFNRE 91 (303)
T ss_pred HHHHHHHCCCCEEEeCCC
Confidence 556677788999888764
No 129
>PRK07085 diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=46.19 E-value=36 Score=36.85 Aligned_cols=46 Identities=17% Similarity=0.293 Sum_probs=34.4
Q ss_pred HHHHHHHHHhhhhCCCEEEEEcCCCCc-hhHHHHHHHHhh--CCCeEEe
Q 017886 268 QERQDAMYKMVEEKVDLILVVGGWNSS-NTSHLQEIAEDR--GIPSYWI 313 (364)
Q Consensus 268 ~~RQ~a~~eLa~~~vD~miVVGGknSS-NT~rL~eia~~~--~~~t~~I 313 (364)
.+++.+++.|.+-.+|.+|+|||-.|. +..+|+|.+++. +.+...|
T Consensus 151 e~~~~i~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIGI 199 (555)
T PRK07085 151 EQKEACLETVKKLKLDGLVIIGGDDSNTNAAILAEYFAKHGCKTQVIGV 199 (555)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHHhCCCccEEEE
Confidence 466777777765679999999999887 555899988876 4455554
No 130
>cd01410 SIRT7 SIRT7: Eukaryotic and prokaryotic group (class4) which includes human sirtuin SIRT6, SIRT7, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=45.81 E-value=50 Score=30.77 Aligned_cols=58 Identities=16% Similarity=0.163 Sum_probs=38.1
Q ss_pred ccccccccccHHHHHHHHHHHHhhhhCCCEEEEEcCCCC-chhHHHHHHHHhhCCCeEEeCC
Q 017886 255 EHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNS-SNTSHLQEIAEDRGIPSYWIDS 315 (364)
Q Consensus 255 ~~~~v~nTIC~AT~~RQ~a~~eLa~~~vD~miVVGGknS-SNT~rL~eia~~~~~~t~~Ie~ 315 (364)
+.+..|+.-= ....-+++.+. + .++|++||||-.-+ .-...|...+++.|.+.+.|.-
T Consensus 132 P~VV~FgE~l-p~~~~~~a~~~-~-~~aDlllviGTSl~V~pa~~l~~~~~~~g~~vi~iN~ 190 (206)
T cd01410 132 DTIVDFGERL-PPENWMGAAAA-A-CRADLFLCLGTSLQVTPAANLPLKAARAGGRLVIVNL 190 (206)
T ss_pred CcEEECCCCC-CHHHHHHHHHH-H-hcCCEEEEECcCceehhHHHHHHHHHhcCCeEEEECC
Confidence 4556666521 22234445444 4 47999999998654 3445788899999988887765
No 131
>PRK10355 xylF D-xylose transporter subunit XylF; Provisional
Probab=45.80 E-value=1.9e+02 Score=28.28 Aligned_cols=89 Identities=16% Similarity=0.175 Sum_probs=53.5
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHH-HHHHHhhhhCCCEEEEEcCCCCchh
Q 017886 218 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSNT 296 (364)
Q Consensus 218 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ-~a~~eLa~~~vD~miVVGGknSSNT 296 (364)
.+|+++. ..+.-.-|..+++-+.....+. +-.+.+.++- + ..++| +.++.|...++|.+|+.+...+...
T Consensus 26 ~~Ig~i~-~~~~~~f~~~~~~gi~~~a~~~------g~~l~i~~~~-~-~~~~~~~~i~~l~~~~vDGiIi~~~~~~~~~ 96 (330)
T PRK10355 26 VKIGMAI-DDLRLERWQKDRDIFVKKAESL------GAKVFVQSAN-G-NEETQMSQIENMINRGVDVLVIIPYNGQVLS 96 (330)
T ss_pred ceEEEEe-cCCCchHHHHHHHHHHHHHHHc------CCEEEEECCC-C-CHHHHHHHHHHHHHcCCCEEEEeCCChhhHH
Confidence 4677665 6677778888888887643322 1223333221 1 22334 4455665568999999874332233
Q ss_pred HHHHHHHHhhCCCeEEeCCC
Q 017886 297 SHLQEIAEDRGIPSYWIDSE 316 (364)
Q Consensus 297 ~rL~eia~~~~~~t~~Ie~~ 316 (364)
...+.+.+.+.|...+++.
T Consensus 97 -~~l~~~~~~~iPvV~id~~ 115 (330)
T PRK10355 97 -NVIKEAKQEGIKVLAYDRM 115 (330)
T ss_pred -HHHHHHHHCCCeEEEECCC
Confidence 3445566788999999874
No 132
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=45.66 E-value=37 Score=31.49 Aligned_cols=94 Identities=21% Similarity=0.285 Sum_probs=51.8
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHHHHHHHhhhhCCCEEEEEcCCCCchhH
Q 017886 218 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTS 297 (364)
Q Consensus 218 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ~a~~eLa~~~vD~miVVGGknSSNT~ 297 (364)
.++++++--+-..+++. ....+.|.+.-+ -++...+++ . -++....|. ..|++++=|| ||.
T Consensus 32 ~~i~~IptAs~~~~~~~---~~~~~a~~~l~G-----~~~~~~~~~--~---~~~~~~~l~--~ad~I~l~GG----~~~ 92 (212)
T cd03146 32 PKVLFVPTASGDRDEYT---ARFYAAFESLRG-----VEVSHLHLF--D---TEDPLDALL--EADVIYVGGG----NTF 92 (212)
T ss_pred CeEEEECCCCCCHHHHH---HHHHHHHhhccC-----cEEEEEecc--C---cccHHHHHh--cCCEEEECCc----hHH
Confidence 58999987777544432 233332222101 122222221 1 223345553 6899998886 899
Q ss_pred HHHHHHHhhCCCeEEeCCCCccCCCCcchhhhccchhhhhcccCCCCCCEEEEEeCCC
Q 017886 298 HLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPKGQITIGITSGAS 355 (364)
Q Consensus 298 rL~eia~~~~~~t~~Ie~~~eL~~~~~~~~~~~~~~~~~~~~wl~~~~~~VGITAGAS 355 (364)
+|.+.-++.+. +++ ++ +++.++...+|++|||-
T Consensus 93 ~~~~~l~~~~l--------~~~-----l~------------~~~~~g~~i~G~SAGa~ 125 (212)
T cd03146 93 NLLAQWREHGL--------DAI-----LK------------AALERGVVYIGWSAGSN 125 (212)
T ss_pred HHHHHHHHcCH--------HHH-----HH------------HHHHCCCEEEEECHhHH
Confidence 99888877641 110 10 22325778899999973
No 133
>cd06303 PBP1_LuxPQ_Quorum_Sensing Periplasmic binding protein (LuxP) of autoinducer-2 (AI-2) receptor LuxPQ from Vibrio harveyi and its close homologs. Periplasmic binding protein (LuxP) of autoinducer-2 (AI-2) receptor LuxPQ from Vibrio harveyi and its close homologs from other bacteria. The members of this group are highly homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea, and that are members of the type I periplasmic binding protein superfamily. The Vibrio harveyi AI-2 receptor consists of two polypeptides, LuxP and LuxQ: LuxP is a periplasmic binding protein that binds AI-2 by clamping it between two domains, LuxQ is an integral membrane protein belonging to the two-component sensor kinase family. Unlike AI-2 bound to the LsrB receptor in Salmonella typhimurium, the Vibrio harveyi AI-2 signaling molecule has an unusual furanosyl borate
Probab=45.64 E-value=1.3e+02 Score=27.98 Aligned_cols=86 Identities=6% Similarity=-0.013 Sum_probs=41.3
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHH--HHHHHHH-HHHhhhhCCCEEEEEcCCCCchh
Q 017886 220 VGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDA--TQERQDA-MYKMVEEKVDLILVVGGWNSSNT 296 (364)
Q Consensus 220 v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~v~nTIC~A--T~~RQ~a-~~eLa~~~vD~miVVGGknSSNT 296 (364)
|+++...-.+-.-|..+.+.+.+.+... +-++.+..+-+.. ..++|.. +..|.+.++|.+|+.++.. ++.
T Consensus 2 Igvi~~~~~~~~~~~~~~~~i~~~~~~~------g~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~vDgiIv~~~~~-~~~ 74 (280)
T cd06303 2 IAVIYPGQQISDYWVRNIASFTARLEEL------NIPYELTQFSSRPGIDHRLQSQQLNEALQSKPDYLIFTLDSL-RHR 74 (280)
T ss_pred eeEEecCccHHHHHHHHHHHHHHHHHHc------CCcEEEEEeccCcccCHHHHHHHHHHHHHcCCCEEEEcCCch-hhH
Confidence 5555433112345666666665532222 1122222111222 3456644 4455557899999987532 233
Q ss_pred HHHHHHHHhhCCCeEEe
Q 017886 297 SHLQEIAEDRGIPSYWI 313 (364)
Q Consensus 297 ~rL~eia~~~~~~t~~I 313 (364)
..|.+ +.+.+.|...+
T Consensus 75 ~~~~~-l~~~~~p~V~i 90 (280)
T cd06303 75 KLIER-VLASGKTKIIL 90 (280)
T ss_pred HHHHH-HHhCCCCeEEE
Confidence 44444 44555555445
No 134
>PF01726 LexA_DNA_bind: LexA DNA binding domain; InterPro: IPR006199 This is the DNA binding domain of the LexA SOS regulon repressor which prevents expression of DNA repair proteins in bacteria. The aligned region contains a variant form of the helix-turn-helix DNA binding motif []. This domain usually at the N terminus is found associated with IPR006198 from INTERPRO the auto-proteolytic domain of LexA 3.4.21.88 from EC.; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1LEA_A 1JHH_A 3JSP_A 1JHF_A 3JSO_B 1LEB_A 3K2Z_A.
Probab=45.60 E-value=24 Score=27.13 Aligned_cols=39 Identities=10% Similarity=0.060 Sum_probs=29.9
Q ss_pred EcCCCCCHHHHHHHHhcCCcEEeccCchhHHHHHHHHHHhhCCCeE
Q 017886 102 LPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTS 147 (364)
Q Consensus 102 IrAHGv~~~v~~~l~~~g~~iiDaTCP~V~kv~~~v~~~~~~Gy~i 147 (364)
+..||.||.+.+.++.-|+. -...||...+.|.++||--
T Consensus 19 ~~~~G~~Pt~rEIa~~~g~~-------S~~tv~~~L~~Le~kG~I~ 57 (65)
T PF01726_consen 19 IEENGYPPTVREIAEALGLK-------STSTVQRHLKALERKGYIR 57 (65)
T ss_dssp HHHHSS---HHHHHHHHTSS-------SHHHHHHHHHHHHHTTSEE
T ss_pred HHHcCCCCCHHHHHHHhCCC-------ChHHHHHHHHHHHHCcCcc
Confidence 34689999999999998874 3588999999999999853
No 135
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=45.41 E-value=1.6e+02 Score=26.07 Aligned_cols=23 Identities=13% Similarity=0.335 Sum_probs=16.3
Q ss_pred ccCCCEE-EEcCCCCCHHHHHHHH
Q 017886 94 VNKGDVV-VLPAFGAAVEEMVTLN 116 (364)
Q Consensus 94 l~~g~~V-IIrAHGv~~~v~~~l~ 116 (364)
+.++|.| +|+--|-++++.+.++
T Consensus 73 ~~~~D~vI~iS~sG~t~~~i~~~~ 96 (179)
T cd05005 73 IGPGDLLIAISGSGETSSVVNAAE 96 (179)
T ss_pred CCCCCEEEEEcCCCCcHHHHHHHH
Confidence 3456664 6888899998776653
No 136
>TIGR03669 urea_ABC_arch urea ABC transporter, substrate-binding protein, archaeal type. Members of this protein family are identified as the substrate-binding protein of a urea ABC transport system by similarity to a known urea transporter from Corynebacterium glutamicum, operon structure, proximity of its operons to urease (urea-utilization protein) operons, and by Partial Phylogenetic Profiling vs. urea utilization.
Probab=45.18 E-value=26 Score=35.12 Aligned_cols=55 Identities=9% Similarity=0.190 Sum_probs=41.3
Q ss_pred ccccccccccHHHHHHHHHHHHhhhhCCCEEEEEcCCCCchhHHHHHHHHhhCCCeE
Q 017886 255 EHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSY 311 (364)
Q Consensus 255 ~~~~v~nTIC~AT~~RQ~a~~eLa~~~vD~miVVGGknSSNT~rL~eia~~~~~~t~ 311 (364)
-++.+.|+-++...-++ ++++|.. +=.+.+|||+..|+.+..+..++++.+.+.+
T Consensus 42 ielv~~D~~~~p~~a~~-~a~~li~-~d~v~~viG~~~S~~~~A~~~~~~~~~~~~i 96 (374)
T TIGR03669 42 IELIDPDPQSDNERYQE-LTRRLLN-RDKVDALWAGYSSATREAIRPIIDRNEQLYF 96 (374)
T ss_pred eEEEEeCCCCCHHHHHH-HHHHHHH-hCCCCEEEcCCchHHHHHHHHHHHhcCceEE
Confidence 36678899998776664 4555652 2246668999999999999999998877655
No 137
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=45.16 E-value=1.5e+02 Score=26.23 Aligned_cols=76 Identities=18% Similarity=0.238 Sum_probs=40.9
Q ss_pred cHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHH----------HcCcEEecCCccc---------ccc-------
Q 017886 38 GVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLE----------EMAVQNIPVEEGK---------KQF------- 91 (364)
Q Consensus 38 GV~RAi~~a~~~~~~~~~~~vy~lG~iIHN~~Vv~~L~----------~~Gv~~v~~~~~~---------~~~------- 91 (364)
.+++|+++..+++.+ .++||++|.= ++-.+-..|. +.|+.++--.+.. ..+
T Consensus 18 ~i~~a~~~i~~~i~~--~~~I~i~G~G-~S~~~A~~~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (177)
T cd05006 18 AIEQAAQLLAEALLN--GGKILICGNG-GSAADAQHFAAELVKRFEKERPGLPAIALTTDTSILTAIANDYGYEEVFSRQ 94 (177)
T ss_pred HHHHHHHHHHHHHHC--CCEEEEEeCc-HHHHHHHHHHHHHhchhccCCCCCceEeccCCHHHHHHHhccCCHHHHHHHH
Confidence 356667766666654 3568888865 5555543322 1244443210000 000
Q ss_pred --ccccCCCEE-EEcCCCCCHHHHHHHH
Q 017886 92 --DVVNKGDVV-VLPAFGAAVEEMVTLN 116 (364)
Q Consensus 92 --~~l~~g~~V-IIrAHGv~~~v~~~l~ 116 (364)
..+.++|.+ +|+.-|-++++.+.++
T Consensus 95 ~~~~~~~~Dv~I~iS~SG~t~~~i~~~~ 122 (177)
T cd05006 95 VEALGQPGDVLIGISTSGNSPNVLKALE 122 (177)
T ss_pred HHHhCCCCCEEEEEeCCCCCHHHHHHHH
Confidence 124567875 5788899998776553
No 138
>PRK09701 D-allose transporter subunit; Provisional
Probab=45.11 E-value=1.7e+02 Score=27.98 Aligned_cols=92 Identities=10% Similarity=-0.012 Sum_probs=55.0
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHHHH-HHHhhhhCCCEEEEEcCCCCchh
Q 017886 218 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDA-MYKMVEEKVDLILVVGGWNSSNT 296 (364)
Q Consensus 218 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ~a-~~eLa~~~vD~miVVGGknSSNT 296 (364)
..|+++.-+ ++-.-|..+.+-+.+...+. +-.+.+.++-+..-..+|.+ ++.+....+|.+|+.+...+.+.
T Consensus 25 ~~Igvi~~~-~~~~f~~~~~~gi~~~a~~~------g~~v~~~~~~~~~~~~~~~~~i~~l~~~~vDgiIi~~~~~~~~~ 97 (311)
T PRK09701 25 AEYAVVLKT-LSNPFWVDMKKGIEDEAKTL------GVSVDIFASPSEGDFQSQLQLFEDLSNKNYKGIAFAPLSSVNLV 97 (311)
T ss_pred CeEEEEeCC-CCCHHHHHHHHHHHHHHHHc------CCeEEEecCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChHHHH
Confidence 478888755 34556777777776643222 12233333333334456644 44554467999999986544444
Q ss_pred HHHHHHHHhhCCCeEEeCCCC
Q 017886 297 SHLQEIAEDRGIPSYWIDSEK 317 (364)
Q Consensus 297 ~rL~eia~~~~~~t~~Ie~~~ 317 (364)
..|.++ .+.+.|.+.+.+..
T Consensus 98 ~~l~~~-~~~giPvV~~~~~~ 117 (311)
T PRK09701 98 MPVARA-WKKGIYLVNLDEKI 117 (311)
T ss_pred HHHHHH-HHCCCcEEEeCCCC
Confidence 555444 56889999888653
No 139
>cd06296 PBP1_CatR_like Ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group includes the ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=45.08 E-value=1.4e+02 Score=27.02 Aligned_cols=85 Identities=14% Similarity=0.157 Sum_probs=46.4
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHH-HHHHHhhhhCCCEEEEEcCCCCchhHH
Q 017886 220 VGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSNTSH 298 (364)
Q Consensus 220 v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ-~a~~eLa~~~vD~miVVGGknSSNT~r 298 (364)
++++..+ ++-.-|..+..-+++... .++ -++.++++ +.....| +.++.|.+..+|.+|+.+...++ .
T Consensus 2 i~vi~~~-~~~~~~~~~~~gi~~~~~-~~g-----~~~~~~~~--~~~~~~~~~~i~~l~~~~~dgiii~~~~~~~---~ 69 (270)
T cd06296 2 IGLVFPD-LDSPWASEVLRGVEEAAA-AAG-----YDVVLSES--GRRTSPERQWVERLSARRTDGVILVTPELTS---A 69 (270)
T ss_pred eEEEECC-CCCccHHHHHHHHHHHHH-HcC-----CeEEEecC--CCchHHHHHHHHHHHHcCCCEEEEecCCCCh---H
Confidence 3444432 233446666666655322 222 22333322 2222344 45666655679999998764333 2
Q ss_pred HHHHHHhhCCCeEEeCCC
Q 017886 299 LQEIAEDRGIPSYWIDSE 316 (364)
Q Consensus 299 L~eia~~~~~~t~~Ie~~ 316 (364)
.++.+++.+.|.+.+++.
T Consensus 70 ~~~~~~~~~ipvV~i~~~ 87 (270)
T cd06296 70 QRAALRRTGIPFVVVDPA 87 (270)
T ss_pred HHHHHhcCCCCEEEEecc
Confidence 355667788999999864
No 140
>cd01409 SIRT4 SIRT4: Eukaryotic and prokaryotic group (class2) which includes human sirtuin SIRT4 and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=45.07 E-value=40 Score=32.63 Aligned_cols=58 Identities=16% Similarity=0.196 Sum_probs=39.7
Q ss_pred ccccccccccHHHHHHHHHHHHhhhhCCCEEEEEcCCCCch-hHHHHHHHHhhCCCeEEeCC
Q 017886 255 EHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSN-TSHLQEIAEDRGIPSYWIDS 315 (364)
Q Consensus 255 ~~~~v~nTIC~AT~~RQ~a~~eLa~~~vD~miVVGGknSSN-T~rL~eia~~~~~~t~~Ie~ 315 (364)
+.+..|+.-=.. ...+.+.+.+ .++|++||||-.-+-. ...|.+.+++.|.+.+.|.-
T Consensus 181 P~VV~FGE~lp~-~~~~~a~~~~--~~aDlllviGTSl~V~pa~~l~~~a~~~g~~viiIN~ 239 (260)
T cd01409 181 PDVVFFGENVPR-DRVVTAAARL--AEADALLVLGSSLMVYSGYRFVLAAAEAGLPIAIVNI 239 (260)
T ss_pred CCEEECCCCCCH-HHHHHHHHHH--hcCCEEEEeCcCceecchhhHHHHHHHCCCcEEEEcC
Confidence 455556553222 2344555555 3699999999876665 46899999999999988865
No 141
>cd01575 PBP1_GntR Ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. This group represents the ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of GntR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding,
Probab=44.93 E-value=1.7e+02 Score=26.29 Aligned_cols=85 Identities=13% Similarity=0.195 Sum_probs=46.5
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHH-HHHHHhhhhCCCEEEEEcCCCCchhHH
Q 017886 220 VGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSNTSH 298 (364)
Q Consensus 220 v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ-~a~~eLa~~~vD~miVVGGknSSNT~r 298 (364)
|+++... +...-|..+.+-+.+...+. + -++.++++ .....+| +.++.|.+.++|.+|+.+...+ ..
T Consensus 2 Ig~i~~~-~~~~~~~~~~~gi~~~~~~~-g-----~~~~~~~~--~~~~~~~~~~~~~l~~~~vdgiii~~~~~~---~~ 69 (268)
T cd01575 2 VAVLVPS-LSNSVFADVLQGISDVLEAA-G-----YQLLLGNT--GYSPEREEELLRTLLSRRPAGLILTGLEHT---ER 69 (268)
T ss_pred EEEEeCC-CcchhHHHHHHHHHHHHHHc-C-----CEEEEecC--CCCchhHHHHHHHHHHcCCCEEEEeCCCCC---HH
Confidence 3444433 33344566666665432221 1 22333332 2223444 4455555568999999975433 34
Q ss_pred HHHHHHhhCCCeEEeCCC
Q 017886 299 LQEIAEDRGIPSYWIDSE 316 (364)
Q Consensus 299 L~eia~~~~~~t~~Ie~~ 316 (364)
..+.+.+.+.|...+.+.
T Consensus 70 ~~~~~~~~~ipvv~~~~~ 87 (268)
T cd01575 70 TRQLLRAAGIPVVEIMDL 87 (268)
T ss_pred HHHHHHhcCCCEEEEecC
Confidence 555666778899888654
No 142
>cd06330 PBP1_Arsenic_SBP_like Periplasmic solute-binding domain of active transport proteins. Periplasmic solute-binding domain of active transport proteins found in bacteria and Archaea that is predicted to be involved in the efflux of toxic compounds. Members of this subgroup include proteins from Herminiimonas arsenicoxydans, which is resistant to arsenic and various heavy metals such as cadmium and zinc. Moreover, they show significant sequence similarity to the cluster of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa.
Probab=44.93 E-value=42 Score=32.24 Aligned_cols=59 Identities=12% Similarity=0.107 Sum_probs=40.5
Q ss_pred cccccccccHHHHHHHHHHHHhhhhCCCEEEEEcCCCCchhHHHHHHHHhhCCCeEEeCCC
Q 017886 256 HFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSE 316 (364)
Q Consensus 256 ~~~v~nTIC~AT~~RQ~a~~eLa~~~vD~miVVGGknSSNT~rL~eia~~~~~~t~~Ie~~ 316 (364)
++.+.|+-|...... +++++|... -.+..|||...|+.+..+.+++++.+.|.+...+.
T Consensus 42 ~~~~~D~~~~~~~a~-~~a~~li~~-~~v~aiig~~~s~~~~~~~~~~~~~~ip~i~~~s~ 100 (346)
T cd06330 42 ELVVRDEAGKPDEAI-REARELVEN-EGVDMLIGLISSGVALAVAPVAEELKVFFIATDPG 100 (346)
T ss_pred EEEEecCCCCHHHHH-HHHHHHHhc-cCCcEEEcccchHHHHHHHHHHHHcCCeEEEcCCC
Confidence 456778766654444 445555522 23445568899999999999999999888765543
No 143
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=44.82 E-value=1.3e+02 Score=24.65 Aligned_cols=64 Identities=16% Similarity=0.232 Sum_probs=46.3
Q ss_pred HHHHHhhhhCCCEEEEEcCCCCchhHHHHHHHHhhCCCeEEeCCCCccCCCCcchhhhccchhhhhcccCCCCCCEEEEE
Q 017886 272 DAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPKGQITIGIT 351 (364)
Q Consensus 272 ~a~~eLa~~~vD~miVVGGknSSNT~rL~eia~~~~~~t~~Ie~~~eL~~~~~~~~~~~~~~~~~~~~wl~~~~~~VGIT 351 (364)
+++.++. .+ ..+++....+|+....|.+...-.+.|++.+=++. ....|...
T Consensus 43 ~~v~~~l-~~-~~v~~~~d~~~~e~~~~~~~~~~~~~P~~~~i~~~--------------------------~g~~l~~~ 94 (114)
T cd02958 43 ESVKEFI-RE-NFIFWQCDIDSSEGQRFLQSYKVDKYPHIAIIDPR--------------------------TGEVLKVW 94 (114)
T ss_pred HHHHHHH-Hh-CEEEEEecCCCccHHHHHHHhCccCCCeEEEEeCc--------------------------cCcEeEEE
Confidence 6777776 33 78889999999888888887777777876553321 23567778
Q ss_pred eCCCCCHHHHhc
Q 017886 352 SGASTPDKVISS 363 (364)
Q Consensus 352 AGASTP~~lI~e 363 (364)
.|..+|+.++..
T Consensus 95 ~G~~~~~~f~~~ 106 (114)
T cd02958 95 SGNITPEDLLSQ 106 (114)
T ss_pred cCCCCHHHHHHH
Confidence 888999887653
No 144
>cd06321 PBP1_ABC_sugar_binding_like_11 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=44.35 E-value=1.6e+02 Score=26.95 Aligned_cols=125 Identities=18% Similarity=0.203 Sum_probs=63.6
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHHHHH-HHhhhhCCCEEEEEcCCCCchhHH
Q 017886 220 VGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAM-YKMVEEKVDLILVVGGWNSSNTSH 298 (364)
Q Consensus 220 v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ~a~-~eLa~~~vD~miVVGGknSSNT~r 298 (364)
|+++..+ ++-.-|.++...+.+...+. +. +-.+.++ .+....++|.+. +.+....+|.+|+.+...+.+...
T Consensus 2 Ig~v~~~-~~~~~~~~~~~gi~~~~~~~-~~---~~~~~~~--~~~~~~~~~~~~i~~~~~~~~dgiIi~~~~~~~~~~~ 74 (271)
T cd06321 2 IGVSVGD-LGNPFFVALAKGAEAAAKKL-NP---GVKVTVV--SADYDLNKQVSQIDNFIAAKVDLILLNAVDSKGIAPA 74 (271)
T ss_pred eEEEecc-cCCHHHHHHHHHHHHHHHHh-CC---CeEEEEc--cCCCCHHHHHHHHHHHHHhCCCEEEEeCCChhHhHHH
Confidence 4555543 44566777777776643331 10 1122222 233445566443 444446899999876443334444
Q ss_pred HHHHHHhhCCCeEEeCCCCccCCCCcchhhh-ccchhhhhcccCC---CCCCEEEEEeCCC
Q 017886 299 LQEIAEDRGIPSYWIDSEKRIGPGNKIAYKL-MHGELVEKENWLP---KGQITIGITSGAS 355 (364)
Q Consensus 299 L~eia~~~~~~t~~Ie~~~eL~~~~~~~~~~-~~~~~~~~~~wl~---~~~~~VGITAGAS 355 (364)
+ +.+++.+.|...+....+ +...-+.+.. ..|+. ..+||- .|..+|++-+|..
T Consensus 75 i-~~~~~~~ipvv~~~~~~~-~~~~~V~~d~~~~g~~--~~~~l~~~~~g~~~i~~i~g~~ 131 (271)
T cd06321 75 V-KRAQAAGIVVVAVDVAAE-GADATVTTDNVQAGEI--SCQYLADRLGGKGNVAILNGPP 131 (271)
T ss_pred H-HHHHHCCCeEEEecCCCC-CccceeeechHHHHHH--HHHHHHHHhCCCceEEEEeCCC
Confidence 4 445577899999976432 1110011110 11111 112332 2788999998853
No 145
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=44.33 E-value=2.9e+02 Score=26.41 Aligned_cols=26 Identities=8% Similarity=0.224 Sum_probs=21.2
Q ss_pred CCceEEecccccCHHHHHHHHHcCcEEecC
Q 017886 55 EEKIWITNEIIHNPTVNKRLEEMAVQNIPV 84 (364)
Q Consensus 55 ~~~vy~lG~iIHN~~Vv~~L~~~Gv~~v~~ 84 (364)
+++||.+|+ +...+.|++.|+..+++
T Consensus 85 ~~~v~~iG~----~~~~~~l~~~g~~~~~~ 110 (279)
T TIGR01452 85 PKAVYVIGE----EGLRAELDAAGIRLAGD 110 (279)
T ss_pred CCEEEEEcC----HHHHHHHHHCCCEEecC
Confidence 457999997 46778999999998764
No 146
>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.
Probab=44.12 E-value=2.1e+02 Score=25.99 Aligned_cols=87 Identities=16% Similarity=0.152 Sum_probs=47.9
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHH-HHHHHhhhhCCCEEEEEcCCCCchhHH
Q 017886 220 VGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSNTSH 298 (364)
Q Consensus 220 v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ-~a~~eLa~~~vD~miVVGGknSSNT~r 298 (364)
|+++..+ ++-.-|..+.+-+.+...+. +-.+.++++--+. ..| +.++.+...++|.+|+..+..+.+...
T Consensus 2 Ig~i~~~-~~~~~~~~~~~gi~~~~~~~------g~~~~~~~~~~~~--~~~~~~l~~~~~~~vdgii~~~~~~~~~~~~ 72 (273)
T cd06305 2 IAVVRYG-GSGDFDQAYLAGTKAEAEAL------GGDLRVYDAGGDD--AKQADQIDQAIAQKVDAIIIQHGRAEVLKPW 72 (273)
T ss_pred eEEEeec-CCCcHHHHHHHHHHHHHHHc------CCEEEEECCCCCH--HHHHHHHHHHHHcCCCEEEEecCChhhhHHH
Confidence 4555443 33334556666665532222 2234444433222 333 455555556899999987644434443
Q ss_pred HHHHHHhhCCCeEEeCCC
Q 017886 299 LQEIAEDRGIPSYWIDSE 316 (364)
Q Consensus 299 L~eia~~~~~~t~~Ie~~ 316 (364)
.+-+++.+.|...+.+.
T Consensus 73 -i~~~~~~~ipvV~~~~~ 89 (273)
T cd06305 73 -VKRALDAGIPVVAFDVD 89 (273)
T ss_pred -HHHHHHcCCCEEEecCC
Confidence 44566788999888874
No 147
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=44.07 E-value=62 Score=36.90 Aligned_cols=99 Identities=17% Similarity=0.166 Sum_probs=74.9
Q ss_pred ecccccCHHHHHHHHHcCcEEecCCccccccccccCCCEEEEcCCCCCHHHHHHHHhcCCcEEeccCchhHHHHHHHHHH
Q 017886 61 TNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKH 140 (364)
Q Consensus 61 lG~iIHN~~Vv~~L~~~Gv~~v~~~~~~~~~~~l~~g~~VIIrAHGv~~~v~~~l~~~g~~iiDaTCP~V~kv~~~v~~~ 140 (364)
+|=|--|++..++-.+.|+.||-.. .+. ++..|=--.-+..+.+.|+.+|=+|=|.+.-+....+-.
T Consensus 88 YGfLSEn~efA~~c~eaGI~FIGP~-----~e~--------ld~~GdKv~Ar~~A~~agvPvipgt~~~~~~~ee~~~fa 154 (1149)
T COG1038 88 YGFLSENPEFARACAEAGITFIGPK-----PEV--------LDMLGDKVKARNAAIKAGVPVIPGTDGPIETIEEALEFA 154 (1149)
T ss_pred cccccCCHHHHHHHHHcCCEEeCCC-----HHH--------HHHhccHHHHHHHHHHcCCCccCCCCCCcccHHHHHHHH
Confidence 7888899999999999999999632 111 223333337788899999999999999999888776666
Q ss_pred hhCCCeEEEEecCCCceeeeecccCC-cEEEEcChhhHHHhh
Q 017886 141 KKGDYTSIIHGKYSHEETVATASFAG-KYIIVKNMKEAEYVC 181 (364)
Q Consensus 141 ~~~Gy~iIIiG~~~HpEv~gi~g~~~-~~~vv~~~~e~~~~~ 181 (364)
.+.||.++| ++..|=.+ ..-+|.+.+|+...+
T Consensus 155 ~~~gyPvmi---------KA~~GGGGRGMR~vr~~~~l~~~~ 187 (1149)
T COG1038 155 EEYGYPVMI---------KAAAGGGGRGMRVVRSEADLAEAF 187 (1149)
T ss_pred HhcCCcEEE---------EEccCCCccceeeecCHHHHHHHH
Confidence 678999986 55555444 457889988876543
No 148
>cd06327 PBP1_SBP_like_1 Periplasmic solute-binding domain of active transport proteins that belong to the type I periplasmic binding fold protein family. Periplasmic solute-binding domain of active transport proteins that belong to the type I periplasmic binding fold protein family. Solute binding proteins are the primary specific receptors that initiate uptake of a broad range of solutes, including amino acids, peptides and inorganic ions. The members are predicted to have a similar function to an active transport system for short chain amides and urea by sequence comparison and phylogenetic analysis. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus may also be involved in transport of amino acids.
Probab=44.05 E-value=37 Score=32.60 Aligned_cols=63 Identities=14% Similarity=0.173 Sum_probs=45.0
Q ss_pred cccccccccHHHHHHHHHHHHhhhhCCCEEEEEcCCCCchhHHHHHHHHhhCCCeEEeC-CCCccC
Q 017886 256 HFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWID-SEKRIG 320 (364)
Q Consensus 256 ~~~v~nTIC~AT~~RQ~a~~eLa~~~vD~miVVGGknSSNT~rL~eia~~~~~~t~~Ie-~~~eL~ 320 (364)
++.+.|+-|....-. +++++|. .+-.+.+|||+..|+.+..+..++++.+.|.+.-. +..++.
T Consensus 41 ~l~~~D~~~~p~~a~-~~~~~l~-~~~~V~aviG~~~s~~~~a~~~~~~~~~vp~i~~~s~~~~~~ 104 (334)
T cd06327 41 ELVVADHQNKADVAA-AKAREWI-DRDGVDMIVGGPNSAVALAVQEVAREKKKIYIVTGAGSDDLT 104 (334)
T ss_pred EEEEecCCCCchHHH-HHHHHHH-hhcCceEEECCccHHHHHHHHHHHHHhCceEEecCCCccccc
Confidence 566789888765555 4566676 33456778899999999999999999988776433 333443
No 149
>PRK06683 hypothetical protein; Provisional
Probab=43.83 E-value=35 Score=27.45 Aligned_cols=42 Identities=17% Similarity=0.215 Sum_probs=30.0
Q ss_pred hCCCEEEEEcCCCCchhHHHHHHHHhhCCCeEEeCCCCccCC
Q 017886 280 EKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGP 321 (364)
Q Consensus 280 ~~vD~miVVGGknSSNT~rL~eia~~~~~~t~~Ie~~~eL~~ 321 (364)
+++-++||-.+-...-++++.+.|+.++.|.+++.|-.||-.
T Consensus 26 gkaklViiA~Da~~~~~~~i~~~~~~~~Vpv~~~~t~~eLG~ 67 (82)
T PRK06683 26 GIVKEVVIAEDADMRLTHVIIRTALQHNIPITKVESVRKLGK 67 (82)
T ss_pred CCeeEEEEECCCCHHHHHHHHHHHHhcCCCEEEECCHHHHHH
Confidence 455555555554444444668999999999999999888853
No 150
>TIGR00274 N-acetylmuramic acid 6-phosphate etherase. This protein, MurQ, is involved in recycling components of the bacterial murein sacculus turned over during cell growth. The cell wall metabolite anhydro-N-acetylmuramic acid (anhMurNAc) is converted by a kinase, AnmK, to MurNAc-phosphate, then converted to N-acetylglucosamine-phosphate by this etherase, called MurQ. This family of proteins is similar to the C-terminal half of a number of vertebrate glucokinase regulator proteins and contains a Prosite pattern which is shared by this group of proteins in a region of local similarity.
Probab=43.76 E-value=49 Score=32.68 Aligned_cols=35 Identities=20% Similarity=0.254 Sum_probs=24.8
Q ss_pred ccCCCEE-EEcCCCCCHHHH---HHHHhcCCcEEeccCc
Q 017886 94 VNKGDVV-VLPAFGAAVEEM---VTLNNKNVQIVDTTCP 128 (364)
Q Consensus 94 l~~g~~V-IIrAHGv~~~v~---~~l~~~g~~iiDaTCP 128 (364)
+.++|.| +|+.-|-+|.+. +.++++|..+|=-||.
T Consensus 124 l~~~DvvI~IS~SG~T~~vi~al~~Ak~~Ga~tIaIT~~ 162 (291)
T TIGR00274 124 LTKNDVVVGIAASGRTPYVIAGLQYARSLGALTISIACN 162 (291)
T ss_pred CCCCCEEEEEeCCCCcHHHHHHHHHHHHCCCeEEEEECC
Confidence 4567775 589999999865 4556677777766663
No 151
>PTZ00409 Sir2 (Silent Information Regulator) protein; Provisional
Probab=43.69 E-value=47 Score=32.48 Aligned_cols=58 Identities=22% Similarity=0.235 Sum_probs=38.6
Q ss_pred ccccccccccHHHHHHHHHHHHhhhhCCCEEEEEcCCCCch-hHHHHHHHHhhCCCeEEeCC
Q 017886 255 EHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSN-TSHLQEIAEDRGIPSYWIDS 315 (364)
Q Consensus 255 ~~~~v~nTIC~AT~~RQ~a~~eLa~~~vD~miVVGGknSSN-T~rL~eia~~~~~~t~~Ie~ 315 (364)
+++..|+.--... .-+ .+.+.+ .++|++||||..-.-. ...|...+++.|.+.+.|.-
T Consensus 176 P~VV~FGE~lp~~-~~~-~a~~~~-~~aDlllviGTSl~V~pa~~l~~~a~~~g~~vi~IN~ 234 (271)
T PTZ00409 176 PNVILFGEVIPKS-LLK-QAEKEI-DKCDLLLVVGTSSSVSTATNLCYRAHRKKKKIVEVNI 234 (271)
T ss_pred CcEEEeCCcCCHH-HHH-HHHHHH-HcCCEEEEECCCCcccCHHHHHHHHHHcCCCEEEECC
Confidence 4566676654432 223 334455 4799999999854433 34788889999999887764
No 152
>cd01542 PBP1_TreR_like Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of TreR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding wh
Probab=43.63 E-value=1.8e+02 Score=26.17 Aligned_cols=85 Identities=18% Similarity=0.252 Sum_probs=48.1
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHH-HHHHHhhhhCCCEEEEEcCCCCchhHH
Q 017886 220 VGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSNTSH 298 (364)
Q Consensus 220 v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ-~a~~eLa~~~vD~miVVGGknSSNT~r 298 (364)
|+++.-. ++..-|..+.+-+++...+. + -++.+.++ .....+| +.+++|....+|.+|+.+... +..
T Consensus 2 igvv~~~-~~~~~~~~~~~gi~~~~~~~-g-----~~~~~~~~--~~~~~~~~~~i~~l~~~~~dgii~~~~~~---~~~ 69 (259)
T cd01542 2 IGVIVPR-LDSFSTSRTVKGILAALYEN-G-----YQMLLMNT--NFSIEKEIEALELLARQKVDGIILLATTI---TDE 69 (259)
T ss_pred eEEEecC-CccchHHHHHHHHHHHHHHC-C-----CEEEEEeC--CCCHHHHHHHHHHHHhcCCCEEEEeCCCC---CHH
Confidence 3444432 34445566776666533222 2 22333322 1123444 555667667899999997543 345
Q ss_pred HHHHHHhhCCCeEEeCCC
Q 017886 299 LQEIAEDRGIPSYWIDSE 316 (364)
Q Consensus 299 L~eia~~~~~~t~~Ie~~ 316 (364)
+.+.+++.+.|...++..
T Consensus 70 ~~~~~~~~~ipvv~~~~~ 87 (259)
T cd01542 70 HREAIKKLNVPVVVVGQD 87 (259)
T ss_pred HHHHHhcCCCCEEEEecc
Confidence 556666778999989764
No 153
>cd06298 PBP1_CcpA_like Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation. Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. In gram-positive bacteria, CCR is controlled by HPr, a phosphoenolpyruvate:sugar phsophotrasnferase system (PTS) and a transcriptional regulator CcpA. Moreover, CcpA can regulate sporulation and antibiotic resistance as well as play a role in virulence development of certain pathogens such as the group A streptococcus. The ligand binding domain of CcpA is a member of the LacI-GalR family of bacterial transcription regulators.
Probab=43.28 E-value=1.9e+02 Score=26.16 Aligned_cols=85 Identities=18% Similarity=0.238 Sum_probs=45.9
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHH-HHHHHhhhhCCCEEEEEcCCCCchhHH
Q 017886 220 VGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSNTSH 298 (364)
Q Consensus 220 v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ-~a~~eLa~~~vD~miVVGGknSSNT~r 298 (364)
++++... ++-.-|..+.+.+++...+. + -.+.+.. +.-...+| +.+..|....+|.+|+.+... +..
T Consensus 2 i~vi~~~-~~~~~~~~~~~~~~~~~~~~-g-----~~~~~~~--~~~~~~~~~~~i~~l~~~~vdgiii~~~~~---~~~ 69 (268)
T cd06298 2 VGVIIPD-ITNSYFAELARGIDDIATMY-K-----YNIILSN--SDNDKEKELKVLNNLLAKQVDGIIFMGGKI---SEE 69 (268)
T ss_pred EEEEECC-CcchHHHHHHHHHHHHHHHc-C-----CeEEEEe--CCCCHHHHHHHHHHHHHhcCCEEEEeCCCC---cHH
Confidence 4455433 23445666776666533222 1 1233222 12223445 334455446899999987432 234
Q ss_pred HHHHHHhhCCCeEEeCCC
Q 017886 299 LQEIAEDRGIPSYWIDSE 316 (364)
Q Consensus 299 L~eia~~~~~~t~~Ie~~ 316 (364)
..+.+++.+.|...++..
T Consensus 70 ~~~~l~~~~ipvV~~~~~ 87 (268)
T cd06298 70 HREEFKRSPTPVVLAGSV 87 (268)
T ss_pred HHHHHhcCCCCEEEEccc
Confidence 555566678899988764
No 154
>cd06336 PBP1_ABC_ligand_binding_like_3 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This group includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=43.18 E-value=37 Score=33.03 Aligned_cols=59 Identities=15% Similarity=0.235 Sum_probs=43.4
Q ss_pred cccccccccHHHHHHHHHHHHhhhhCCCEEEEEcCCCCchhHHHHHHHHhhCCCeEEeCCCC
Q 017886 256 HFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEK 317 (364)
Q Consensus 256 ~~~v~nTIC~AT~~RQ~a~~eLa~~~vD~miVVGGknSSNT~rL~eia~~~~~~t~~Ie~~~ 317 (364)
++.+.||=|.+..-+ +++++|. .+-++.+|+|+..|+-+.. .+++++.+.|.+..-+.+
T Consensus 46 el~~~D~~~~p~~a~-~~~~~li-~~~~v~~iiG~~~s~~~~~-~~~~~~~~ip~i~~~~~~ 104 (347)
T cd06336 46 EIVSYDDKYDPAEAA-ANARRLV-QQDGVKFILGPIGGGITAA-QQITERNKVLLLTAYSSD 104 (347)
T ss_pred EEEEecCCCCHHHHH-HHHHHHH-hhcCceEEEeCCCCchhhh-hhhhhhcCceEEeccCCc
Confidence 566889999887776 4556676 3346677889888887777 899999988777655543
No 155
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=43.01 E-value=57 Score=30.35 Aligned_cols=47 Identities=17% Similarity=0.145 Sum_probs=37.3
Q ss_pred HHHHHHHHhhhhCCCEEEEEcCC-CCchhHHHHHHHHhhCCCeEEeCCCCc
Q 017886 269 ERQDAMYKMVEEKVDLILVVGGW-NSSNTSHLQEIAEDRGIPSYWIDSEKR 318 (364)
Q Consensus 269 ~RQ~a~~eLa~~~vD~miVVGGk-nSSNT~rL~eia~~~~~~t~~Ie~~~e 318 (364)
.||=++ ++ .+-|++|+|-+. +|.|..+.++.|++.|.++..|.+..+
T Consensus 100 ~~ql~~--~~-~~gDvli~iS~SG~s~~v~~a~~~Ak~~G~~vI~IT~~~~ 147 (196)
T PRK10886 100 AKQVRA--LG-HAGDVLLAISTRGNSRDIVKAVEAAVTRDMTIVALTGYDG 147 (196)
T ss_pred HHHHHH--cC-CCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 455443 55 578999998775 788899999999999999999988643
No 156
>TIGR00732 dprA DNA protecting protein DprA. Disruption of this gene in both Haemophilus influenzae and Helicobacter pylori drastically reduces the efficiency of transformation with exogenous DNA, but with different levels of effect on chromosomal (linear) and plasmid (circular) DNA. This difference suggests the DprA is not active in recombination, and it has been shown not to affect DNA binding, leaving the intermediate step in natural transformation, DNA processing. In Strep. pneumoniae, inactivation of dprA had no effect on the uptake of DNA. All of these data indicated that DprA is required at a later stage in transformation. Subsequently DprA and RecA were both shown in S. pneumoniae to be required to protect incoming ssDNA from immediate degradation. Role of DprA in non-transformable species is not known. The gene symbol smf was assigned in E. coli, but without assignment of function.
Probab=42.72 E-value=65 Score=30.45 Aligned_cols=44 Identities=16% Similarity=0.137 Sum_probs=35.7
Q ss_pred HHHHHHHHhhhhCCCEEEEEcCCCCchhHHHHHHHHhhCCCeEEeCCC
Q 017886 269 ERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSE 316 (364)
Q Consensus 269 ~RQ~a~~eLa~~~vD~miVVGGknSSNT~rL~eia~~~~~~t~~Ie~~ 316 (364)
.|..-+..| .|++||+++...|-|...+..|.+.|.+.|-+...
T Consensus 147 ~RNriia~l----s~~vivve~~~~sGtl~ta~~A~~~gr~v~~~pg~ 190 (220)
T TIGR00732 147 KRNRIISGL----SRAVLVVEAPLKSGALITARYALEQGREVFAYPGD 190 (220)
T ss_pred HHHHHHHHh----cCEEEEEECCCCCchHHHHHHHHHhCCcEEEEcCC
Confidence 444444445 48999999999999999999999999999998653
No 157
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=42.71 E-value=26 Score=33.27 Aligned_cols=31 Identities=16% Similarity=0.192 Sum_probs=27.7
Q ss_pred cEEeccCchhHHHHHHHHHHhhCCCeEEEEe
Q 017886 121 QIVDTTCPWVSKVWTSVEKHKKGDYTSIIHG 151 (364)
Q Consensus 121 ~iiDaTCP~V~kv~~~v~~~~~~Gy~iIIiG 151 (364)
...|-.|||=+|.|+.+.++.+.|++|.++-
T Consensus 113 vFtDp~CpyCkkl~~~l~~~~~~~v~v~~~~ 143 (232)
T PRK10877 113 VFTDITCGYCHKLHEQMKDYNALGITVRYLA 143 (232)
T ss_pred EEECCCChHHHHHHHHHHHHhcCCeEEEEEe
Confidence 3589999999999999999999999988864
No 158
>cd06363 PBP1_Taste_receptor Ligand-binding domain of the T1R taste receptor. Ligand-binding domain of the T1R taste receptor. The T1R is a member of the family C receptors within the G-protein coupled receptor superfamily, which also includes the metabotropic glutamate receptors, GABAb receptors, the calcium-sensing receptor (CaSR), the V2R pheromone receptors, and a small group of uncharacterized orphan receptors.
Probab=42.39 E-value=30 Score=34.73 Aligned_cols=32 Identities=16% Similarity=0.049 Sum_probs=27.7
Q ss_pred CCEEEEEcCCCCchhHHHHHHHHhhCCCeEEe
Q 017886 282 VDLILVVGGWNSSNTSHLQEIAEDRGIPSYWI 313 (364)
Q Consensus 282 vD~miVVGGknSSNT~rL~eia~~~~~~t~~I 313 (364)
-.+..|||+..|+-+..+..+|.+.+.|.+-.
T Consensus 106 ~~V~aIiGp~~S~~~~av~~i~~~~~vp~is~ 137 (410)
T cd06363 106 PRVVAVIGPDSSTLALTVAPLFSFFLIPQISY 137 (410)
T ss_pred CCeEEEECCCccHHHHHHHHHhcccccccccc
Confidence 46888999999999999999999998876543
No 159
>TIGR02417 fruct_sucro_rep D-fructose-responsive transcription factor. Members of this family belong the lacI helix-turn-helix family (pfam00356) of DNA-binding transcriptional regulators. All members are from the proteobacteria. Characterized members act as positive and negative transcriptional regulators of fructose and sucrose transport and metabolism. Sucrose is a disaccharide composed of fructose and glucose; D-fructose-1-phosphate rather than an intact sucrose moiety has been shown to act as the inducer.
Probab=42.38 E-value=3.1e+02 Score=26.04 Aligned_cols=125 Identities=10% Similarity=0.077 Sum_probs=63.5
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHH-HHHHHhhhhCCCEEEEEcCCCCchh
Q 017886 218 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSNT 296 (364)
Q Consensus 218 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ-~a~~eLa~~~vD~miVVGGknSSNT 296 (364)
..|+++... +.-.-|.++...+.+...+. +-.+.+.++-- ..+++ +.+..|....+|.+|+.+.... +.
T Consensus 61 ~~Igvi~~~-~~~~~~~~~~~~i~~~~~~~------gy~~~i~~~~~--~~~~~~~~~~~l~~~~vdgiIi~~~~~~-~~ 130 (327)
T TIGR02417 61 RTIGLVIPD-LENYSYARIAKELEQQCREA------GYQLLIACSDD--NPDQEKVVIENLLARQVDALIVASCMPP-ED 130 (327)
T ss_pred ceEEEEeCC-CCCccHHHHHHHHHHHHHHC------CCEEEEEeCCC--CHHHHHHHHHHHHHcCCCEEEEeCCCCC-Ch
Confidence 478888753 33345677777776543322 12233333322 23344 3444555568999999875331 33
Q ss_pred HHHHHHHHhhCCCeEEeCCCC-ccCCCCcchhhh-ccchhhhhcccCCCCCCEEEEEeCCC
Q 017886 297 SHLQEIAEDRGIPSYWIDSEK-RIGPGNKIAYKL-MHGELVEKENWLPKGQITIGITSGAS 355 (364)
Q Consensus 297 ~rL~eia~~~~~~t~~Ie~~~-eL~~~~~~~~~~-~~~~~~~~~~wl~~~~~~VGITAGAS 355 (364)
. .++...+.+.|..+++... +.... -+.... ..+..- ...++..|.++||+.+|..
T Consensus 131 ~-~~~~l~~~~iPvV~~~~~~~~~~~~-~V~~dn~~~~~~~-~~~L~~~G~~~I~~i~~~~ 188 (327)
T TIGR02417 131 A-YYQKLQNEGLPVVALDRSLDDEHFC-SVISDDVDAAAEL-IERLLSQHADEFWYLGAQP 188 (327)
T ss_pred H-HHHHHHhcCCCEEEEccccCCCCCC-EEEeCcHHHHHHH-HHHHHHCCCCeEEEEeCcc
Confidence 3 3444556788999998642 21110 010000 111111 1122324789999987754
No 160
>cd06366 PBP1_GABAb_receptor Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). GABA is the major inhibitory neurotransmitter in the mammalian CNS and, like glutamate and other transmitters, acts via both ligand gated ion channels (GABAa receptors) and G-protein coupled receptors (GABAb). GABAa receptors are members of the ionotropic receptor superfamily which includes alpha-adrenergic and glycine receptors. The GABAb receptor is a member of a receptor superfamily which includes the mGlu receptors. The GABAb receptor is coupled to G alpha_i proteins, and activation causes a decrease in calcium, an increase in potassium membrane conductance, and inhibition of cAMP formation. The response is thus inhibitory and leads to hyperpolarization and decreased neurotransmitter release, for example.
Probab=42.33 E-value=48 Score=32.02 Aligned_cols=58 Identities=19% Similarity=0.309 Sum_probs=42.9
Q ss_pred ccccccccccHHHHHHHHHHHHhhhhCCCEEEEEcCCCCchhHHHHHHHHhhCCCeEEeC
Q 017886 255 EHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWID 314 (364)
Q Consensus 255 ~~~~v~nTIC~AT~~RQ~a~~eLa~~~vD~miVVGGknSSNT~rL~eia~~~~~~t~~Ie 314 (364)
-++.+.||-|+...-.+ ++++|. .+-.+..|||+..|+.+..+..++.+.+.|.+-..
T Consensus 40 i~~~~~D~~~~~~~a~~-~a~~l~-~~~~v~~viG~~~s~~~~a~~~~~~~~~ip~i~~~ 97 (350)
T cd06366 40 LVLHVRDSKCDPVQAAS-AALDLL-ENKPVVAIIGPQCSSVAEFVAEVANEWNVPVLSFA 97 (350)
T ss_pred EEEEecCCCCCHHHHHH-HHHHHh-ccCCceEEECCCcHHHHHHHHHHhhcCCeeEEecc
Confidence 35678899888865554 455565 33457778899999999999999999888755433
No 161
>cd06313 PBP1_ABC_sugar_binding_like_5 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=42.05 E-value=1.9e+02 Score=26.75 Aligned_cols=87 Identities=14% Similarity=0.038 Sum_probs=50.3
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHH-HHHHHhhhhCCCEEEEEcCCCCchhHH
Q 017886 220 VGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSNTSH 298 (364)
Q Consensus 220 v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ-~a~~eLa~~~vD~miVVGGknSSNT~r 298 (364)
+++++++ ++-.-|..+.+.+.+...+. +-++.+.+ +....++| +.++.+.+.++|.+|+.+.. +.-...
T Consensus 2 ~~~~~~~-~~~~f~~~~~~gi~~~~~~~------G~~~~~~~--~~~d~~~~~~~i~~~~~~~vdgiii~~~~-~~~~~~ 71 (272)
T cd06313 2 AAFSNIG-LQATWCAQGKQAADEAGKLL------GVDVTWYG--GALDAVKQVAAIENMASQGWDFIAVDPLG-IGTLTE 71 (272)
T ss_pred cceeecc-cCChHHHHHHHHHHHHHHHc------CCEEEEec--CCCCHHHHHHHHHHHHHcCCCEEEEcCCC-hHHhHH
Confidence 5666665 45556777777776542221 22233332 23344566 34555555789999997532 222344
Q ss_pred HHHHHHhhCCCeEEeCCC
Q 017886 299 LQEIAEDRGIPSYWIDSE 316 (364)
Q Consensus 299 L~eia~~~~~~t~~Ie~~ 316 (364)
+++-+.+.+.|...+++.
T Consensus 72 ~i~~~~~~~iPvV~~~~~ 89 (272)
T cd06313 72 AVQKAIARGIPVIDMGTL 89 (272)
T ss_pred HHHHHHHCCCcEEEeCCC
Confidence 555666778999999874
No 162
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=42.01 E-value=41 Score=26.94 Aligned_cols=45 Identities=20% Similarity=0.395 Sum_probs=30.8
Q ss_pred HHhhhhCCCEEEEEcCCCCchhH-HHHHHHHhhCCCeEEeCCCCccC
Q 017886 275 YKMVEEKVDLILVVGGWNSSNTS-HLQEIAEDRGIPSYWIDSEKRIG 320 (364)
Q Consensus 275 ~eLa~~~vD~miVVGGknSSNT~-rL~eia~~~~~~t~~Ie~~~eL~ 320 (364)
+.|-++++-++|+ ..--|.||+ ++-..|++++.|.+.+.|-.||-
T Consensus 21 kai~~gkaklVii-A~D~~~~~~~~i~~~c~~~~Vp~~~~~s~~eLG 66 (82)
T PRK13602 21 KALKRGSVKEVVV-AEDADPRLTEKVEALANEKGVPVSKVDSMKKLG 66 (82)
T ss_pred HHHHcCCeeEEEE-ECCCCHHHHHHHHHHHHHcCCCEEEECCHHHHH
Confidence 3343345555544 444455665 67789999999999999988885
No 163
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=41.66 E-value=43 Score=30.39 Aligned_cols=75 Identities=12% Similarity=0.055 Sum_probs=41.3
Q ss_pred CCceEEecccc-cCHHHHHHHHHcCcE--EecCCccccccccccCCCEEEEcCCCCCHHHHHHHHhcCCcEEeccCchhH
Q 017886 55 EEKIWITNEII-HNPTVNKRLEEMAVQ--NIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVS 131 (364)
Q Consensus 55 ~~~vy~lG~iI-HN~~Vv~~L~~~Gv~--~v~~~~~~~~~~~l~~g~~VIIrAHGv~~~v~~~l~~~g~~iiDaTCP~V~ 131 (364)
+++|.++|-=- =-.-+...|.++|.. +++.. .+++.+.-...-|||.|-|.+.-+....-+.+.-+||...|..-
T Consensus 44 gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~--~~~l~~~l~~aDiVIsat~~~~ii~~~~~~~~~viIDla~prdv 121 (168)
T cd01080 44 GKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSK--TKNLKEHTKQADIVIVAVGKPGLVKGDMVKPGAVVIDVGINRVP 121 (168)
T ss_pred CCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECC--chhHHHHHhhCCEEEEcCCCCceecHHHccCCeEEEEccCCCcc
Confidence 45677776510 012256677777743 23221 11222211233488999998764333444567888998888743
No 164
>cd01412 SIRT5_Af1_CobB SIRT5_Af1_CobB: Eukaryotic, archaeal and prokaryotic group (class3) which includes human sirtuin SIRT5, Archaeoglobus fulgidus Sir2-Af1, and E. coli CobB; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. CobB is a bacterial sirtuin that deacetylates acetyl-CoA synthetase at an active site lysine to stimulate its enzymatic activity.
Probab=41.65 E-value=59 Score=30.33 Aligned_cols=58 Identities=24% Similarity=0.227 Sum_probs=34.4
Q ss_pred ccccccccccHHHHHHHHHHHHhhhhCCCEEEEEcCC-CCchhHHHHHHHHhhCCCeEEeCCC
Q 017886 255 EHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGW-NSSNTSHLQEIAEDRGIPSYWIDSE 316 (364)
Q Consensus 255 ~~~~v~nTIC~AT~~RQ~a~~eLa~~~vD~miVVGGk-nSSNT~rL~eia~~~~~~t~~Ie~~ 316 (364)
+++..|+.-=.. +.+.+.+.. .+.|++||||-. .-.-+.+|.+.++..+.+.+.|.--
T Consensus 142 p~Vv~fge~~p~---~~~~~~~~~-~~~dl~lvlGTsl~v~p~~~l~~~~~~~~~~~i~iN~~ 200 (224)
T cd01412 142 PGVVWFGESLPL---ALLEAVEAL-AKADLFLVIGTSGVVYPAAGLPEEAKERGARVIEINPE 200 (224)
T ss_pred CceEECCCCCHH---HHHHHHHHH-HcCCEEEEECcCccchhHHHHHHHHHHCCCeEEEECCC
Confidence 445555543222 333333333 479999999921 1134558888888888777777543
No 165
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=41.31 E-value=56 Score=31.25 Aligned_cols=59 Identities=10% Similarity=0.148 Sum_probs=39.7
Q ss_pred CCCEEEEEcCCCCchhHHHHHHHHhhCCCeEEeCCCCccCCCCcchhhhccchhhhhcccCC----CCCCEEEEEeCCCC
Q 017886 281 KVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLP----KGQITIGITSGAST 356 (364)
Q Consensus 281 ~vD~miVVGGknSSNT~rL~eia~~~~~~t~~Ie~~~eL~~~~~~~~~~~~~~~~~~~~wl~----~~~~~VGITAGAST 356 (364)
..+++|.-- -+-.--.++++.|++.+.....+++++. .. -++| .+.-+|+|++|...
T Consensus 85 g~~LViaAT-dD~~vN~~I~~~a~~~~~lvn~vd~p~~-~d-----------------Fi~PAiv~rg~l~IaIST~G~s 145 (223)
T PRK05562 85 DKHLIVIAT-DDEKLNNKIRKHCDRLYKLYIDCSDYKK-GL-----------------CIIPYQRSTKNFVFALNTKGGS 145 (223)
T ss_pred CCcEEEECC-CCHHHHHHHHHHHHHcCCeEEEcCCccc-Ce-----------------EEeeeEEecCCEEEEEECCCcC
Confidence 355444443 3444557899999998887777777643 32 3343 36789999999888
Q ss_pred CH
Q 017886 357 PD 358 (364)
Q Consensus 357 P~ 358 (364)
|-
T Consensus 146 P~ 147 (223)
T PRK05562 146 PK 147 (223)
T ss_pred cH
Confidence 84
No 166
>cd06292 PBP1_LacI_like_10 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=41.28 E-value=1.8e+02 Score=26.44 Aligned_cols=80 Identities=11% Similarity=0.177 Sum_probs=44.2
Q ss_pred ChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHH-HHHHHhhhhCCCEEEEEcCCCCchh--HHHHHHHHh
Q 017886 229 LKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSNT--SHLQEIAED 305 (364)
Q Consensus 229 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ-~a~~eLa~~~vD~miVVGGknSSNT--~rL~eia~~ 305 (364)
.-.-|..+..-+.+...+. + -++.+.+ .+...++| +.++.|.+..+|.+|+.+.-++..+ ..+++-+.+
T Consensus 10 ~~~~~~~~~~gi~~~~~~~-g-----~~~~~~~--~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~i~~~~~ 81 (273)
T cd06292 10 SNPIFPAFAEAIEAALAQY-G-----YTVLLCN--TYRGGVSEADYVEDLLARGVRGVVFISSLHADTHADHSHYERLAE 81 (273)
T ss_pred cCchHHHHHHHHHHHHHHC-C-----CEEEEEe--CCCChHHHHHHHHHHHHcCCCEEEEeCCCCCcccchhHHHHHHHh
Confidence 3345666666666543332 1 1222221 11223445 4456666678999999985433222 233344557
Q ss_pred hCCCeEEeCCC
Q 017886 306 RGIPSYWIDSE 316 (364)
Q Consensus 306 ~~~~t~~Ie~~ 316 (364)
.+.|...|.+.
T Consensus 82 ~~ipvV~i~~~ 92 (273)
T cd06292 82 RGLPVVLVNGR 92 (273)
T ss_pred CCCCEEEEcCC
Confidence 78999999864
No 167
>PRK02842 light-independent protochlorophyllide reductase subunit N; Provisional
Probab=41.16 E-value=4.2e+02 Score=27.29 Aligned_cols=105 Identities=10% Similarity=0.140 Sum_probs=58.0
Q ss_pred ceEEEEeCCCCCcc----cHHHHHHHHHHHHhh--CCCCceEEecccccC--HHHHHHHHHcCcEEecCCc--ccccccc
Q 017886 24 NVKVKLAESYGFCW----GVERAVQIAYEARKQ--FPEEKIWITNEIIHN--PTVNKRLEEMAVQNIPVEE--GKKQFDV 93 (364)
Q Consensus 24 ~mkI~lA~~~GFC~----GV~RAi~~a~~~~~~--~~~~~vy~lG~iIHN--~~Vv~~L~~~Gv~~v~~~~--~~~~~~~ 93 (364)
+..|+-+...||.. |...|++...+.+.+ ...+.|-.+|++--. .++..-|+++|+.++.-.+ ...++..
T Consensus 129 ~~pvv~v~t~Gf~g~~~~G~~~~~~alv~~~~~~~~~~~~VniiG~~~~~d~~el~~lL~~~Gi~v~~~lp~~~~~d~~~ 208 (427)
T PRK02842 129 GVPVLNYSGSGLETTFTQGEDAVLAALVPFCPEAPADHPSLVLVGSLADVVEDQLTLEFKKLGIGVVGFLPARRFTELPA 208 (427)
T ss_pred CCeEEEeeCCCccccHHHHHHHHHHHHhhhcccccCCCCcEEEEEeCCcchHHHHHHHHHHcCCeeEEEeCCccHHHHhh
Confidence 45677888999953 344444433333321 113468889984322 3466777999999752111 1122333
Q ss_pred ccCCCEEEEcCCCCCHHHHHHHHhcCCcEEeccCch
Q 017886 94 VNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPW 129 (364)
Q Consensus 94 l~~g~~VIIrAHGv~~~v~~~l~~~g~~iiDaTCP~ 129 (364)
.+.+..++. .+......-+.|+++|+..+-..-|+
T Consensus 209 ~~~~~~~~~-~~~~~~~~A~~L~~~GiP~~~~~~P~ 243 (427)
T PRK02842 209 IGPGTVVAL-AQPFLSDTARALRERGAKVLTAPFPL 243 (427)
T ss_pred cCcCcEEEE-eCHHHHHHHHHHHHcCCccccCCCCc
Confidence 334544432 22222245667788899887776665
No 168
>PRK10838 spr outer membrane lipoprotein; Provisional
Probab=40.96 E-value=57 Score=30.46 Aligned_cols=72 Identities=21% Similarity=0.410 Sum_probs=40.5
Q ss_pred cchHHHHHHH-cCCcccccceEEEEeCCCCC-cccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHHcCcEEec
Q 017886 6 TSDIIKKLKE-NGFEYTWGNVKVKLAESYGF-CWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIP 83 (364)
Q Consensus 6 ~~~~~~~~~~-~~~~~~~~~mkI~lA~~~GF-C~GV~RAi~~a~~~~~~~~~~~vy~lG~iIHN~~Vv~~L~~~Gv~~v~ 83 (364)
.+.|++.-+. .|.++.||+. .+.|| |.|.-+ .+++.. ++ |.-|..-......|-. |+
T Consensus 67 ~~~il~~a~~~~G~pY~~GG~-----s~~G~DCSGfv~---~vy~~~--~G----------i~LPr~t~~Q~~~g~~-V~ 125 (190)
T PRK10838 67 KSRIMDQYADWKGVRYRLGGS-----TKKGIDCSAFVQ---RTFREQ--FG----------LELPRSTYEQQEMGKS-VS 125 (190)
T ss_pred HHHHHHHHHHHCCCCccCCCC-----CCCCeEcHHHHH---HHHHHh--CC----------CCCCCCHHHHHhcCcC-cc
Confidence 4445544333 4899999984 46799 999855 444321 11 1112222233445532 22
Q ss_pred CCccccccccccCCCEEEEcCC
Q 017886 84 VEEGKKQFDVVNKGDVVVLPAF 105 (364)
Q Consensus 84 ~~~~~~~~~~l~~g~~VIIrAH 105 (364)
.+++.+||.|+|+..
T Consensus 126 -------~~~lqpGDLVfF~~~ 140 (190)
T PRK10838 126 -------RSKLRTGDLVLFRAG 140 (190)
T ss_pred -------cCCCCCCcEEEECCC
Confidence 356778999989753
No 169
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=40.94 E-value=89 Score=31.53 Aligned_cols=78 Identities=15% Similarity=0.312 Sum_probs=45.7
Q ss_pred ceEEEEEcCCCCh-HHHHHHHHHHHHHHhhhccccccccccccccccc-HHHHHHHHHHHHhh-hhCCCEEEEEcCCCCc
Q 017886 218 VKVGIANQTTMLK-GETEEIGKLVEKTMMRKFGVENVNEHFISFNTIC-DATQERQDAMYKMV-EEKVDLILVVGGWNSS 294 (364)
Q Consensus 218 ~kv~vvsQTT~~~-~~~~~i~~~l~~~~~~~~~~~~~~~~~~v~nTIC-~AT~~RQ~a~~eLa-~~~vD~miVVGGknSS 294 (364)
+++.+|+-..+.. .-++++.+.|++ . +.++.+|+.+- +.|.+-=+.+.+++ ...+|++|-|||=.+-
T Consensus 29 ~~~lvv~~~~~~~~~~~~~v~~~L~~----~------~~~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGGGS~i 98 (377)
T cd08176 29 KKALIVTDKGLVKIGVVEKVTDVLDE----A------GIDYVIYDGVKPNPTITNVKDGLAVFKKEGCDFIISIGGGSPH 98 (377)
T ss_pred CeEEEECCchHhhcCcHHHHHHHHHH----c------CCeEEEeCCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCCcHHH
Confidence 4788887655543 456677776653 1 12244554432 22222222222222 2469999999999999
Q ss_pred hhHHHHHHHHh
Q 017886 295 NTSHLQEIAED 305 (364)
Q Consensus 295 NT~rL~eia~~ 305 (364)
.+-|..-+.-.
T Consensus 99 D~aK~ia~~~~ 109 (377)
T cd08176 99 DCAKAIGIVAT 109 (377)
T ss_pred HHHHHHHHHHh
Confidence 99998776543
No 170
>cd06324 PBP1_ABC_sugar_binding_like_13 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=40.91 E-value=1.6e+02 Score=27.99 Aligned_cols=77 Identities=10% Similarity=0.157 Sum_probs=45.0
Q ss_pred hHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHHHH-HHHhhhh--CCCEEEEEcCCCCchhHHHHHHHHhh
Q 017886 230 KGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDA-MYKMVEE--KVDLILVVGGWNSSNTSHLQEIAEDR 306 (364)
Q Consensus 230 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ~a-~~eLa~~--~vD~miVVGGknSSNT~rL~eia~~~ 306 (364)
-.-|..+...+.....+. + -.+.+. .+....++|.+ ++.|... .+|.+|+.+... ...++.+.+++.
T Consensus 12 ~~~~~~~~~gi~~~~~~~-g-----~~v~~~--~~~~~~~~~~~~i~~~~~~~~~vdgiIi~~~~~--~~~~~~~~~~~~ 81 (305)
T cd06324 12 EPFWNSVARFMQAAADDL-G-----IELEVL--YAERDRFLMLQQARTILQRPDKPDALIFTNEKS--VAPELLRLAEGA 81 (305)
T ss_pred CcHHHHHHHHHHHHHHhc-C-----CeEEEE--eCCCCHHHHHHHHHHHHHhccCCCEEEEcCCcc--chHHHHHHHHhC
Confidence 344666766666543222 1 122222 23345566644 4455445 799999976432 344556677788
Q ss_pred CCCeEEeCCC
Q 017886 307 GIPSYWIDSE 316 (364)
Q Consensus 307 ~~~t~~Ie~~ 316 (364)
|.|.+.+++.
T Consensus 82 giPvV~~~~~ 91 (305)
T cd06324 82 GVKLFLVNSG 91 (305)
T ss_pred CCeEEEEecC
Confidence 9999989864
No 171
>TIGR02263 benz_CoA_red_C benzoyl-CoA reductase, subunit C. This model describes C subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This enzyme acts under anaerobic conditions.
Probab=40.77 E-value=80 Score=32.13 Aligned_cols=117 Identities=12% Similarity=0.027 Sum_probs=68.3
Q ss_pred HcCCcccccceEEEEeCCCCCcccHHHHHHHHHHHHhh--------CCCCceEEecccccCH--HHHHHHHHcCcEEecC
Q 017886 15 ENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQ--------FPEEKIWITNEIIHNP--TVNKRLEEMAVQNIPV 84 (364)
Q Consensus 15 ~~~~~~~~~~mkI~lA~~~GFC~GV~RAi~~a~~~~~~--------~~~~~vy~lG~iIHN~--~Vv~~L~~~Gv~~v~~ 84 (364)
..+.++....|- +--..+|+++....+++.++.+++ ..+.+|+..|+..=++ .+++.+++.|..+|-+
T Consensus 187 ~~p~pitg~e~~--~~~~~~~~~~~~e~~~~L~~~l~el~~~~~~~~~~~RIl~tG~~~~~~~~k~~~~iE~~G~~VV~d 264 (380)
T TIGR02263 187 DEPWKVPSADLY--LLLRAGLVIPVEEHNQMLADYLAAARKQEAPIKDNCRVIICGMFCEQPPLNLIKSIELSGCYIVDD 264 (380)
T ss_pred hCCCCCCHHHHH--HHHHhhccCCHHHHHHHHHHHHHHHHhccccCCCCCEEEEECcCCCCchHHHHHHHHHCCCEEEEe
Confidence 345555543333 234568999999999887665531 1124799999776665 7889999999998853
Q ss_pred CccccccccccCCCE---EEEcCCCCCHHHHHHHHhcCCcE-EeccCc-------hhHHHHHHHHHHhhCC
Q 017886 85 EEGKKQFDVVNKGDV---VVLPAFGAAVEEMVTLNNKNVQI-VDTTCP-------WVSKVWTSVEKHKKGD 144 (364)
Q Consensus 85 ~~~~~~~~~l~~g~~---VIIrAHGv~~~v~~~l~~~g~~i-iDaTCP-------~V~kv~~~v~~~~~~G 144 (364)
+...|.. .-+. .+.+-++.+.++-+.+ ..++|+ .+..+.+.++++.-+|
T Consensus 265 --------d~c~g~r~~~~~v~---e~~dp~~aLA~~Yl~~~~~c~~~~~~~~~~R~~~i~~lvke~~aDG 324 (380)
T TIGR02263 265 --------DFIIVHRFENNDVA---LAGDPLQNLALAFLHDSISTAAKYDDDEADKGKYLLDQVRKNAAEG 324 (380)
T ss_pred --------cCCccchhhhccCC---CCCCHHHHHHHHHhhCCCCCccccCCChhhHHHHHHHHHHHhCCCE
Confidence 2222211 1111 1234456666665543 333442 3344556666665565
No 172
>TIGR02638 lactal_redase lactaldehyde reductase. This clade of genes encoding iron-containing alcohol dehydrogenase (pfam00465) proteins is generally found in apparent operons for the catabolism of rhamnose or fucose. Catabolism of both of these monosaccharides results in lactaldehyde which is reduced by this enzyme to 1,2 propanediol. This protein is alternatively known by the name 1,2 propanediol oxidoreductase. This enzyme is active under anaerobic conditions in E. coli while being inactivated by reactive oxygen species under aerobic conditions. Under aerobic conditions the lactaldehyde product of rhamnose and fucose catabolism is believed to be oxidized to lactate by a separate enzyme, lactaldehyde dehydrogenase.
Probab=40.67 E-value=1.1e+02 Score=30.91 Aligned_cols=79 Identities=14% Similarity=0.226 Sum_probs=49.1
Q ss_pred ceEEEEEcCCCChH-HHHHHHHHHHHHHhhhccccccccccccccccc-HHHHHHHHHHHHhh-hhCCCEEEEEcCCCCc
Q 017886 218 VKVGIANQTTMLKG-ETEEIGKLVEKTMMRKFGVENVNEHFISFNTIC-DATQERQDAMYKMV-EEKVDLILVVGGWNSS 294 (364)
Q Consensus 218 ~kv~vvsQTT~~~~-~~~~i~~~l~~~~~~~~~~~~~~~~~~v~nTIC-~AT~~RQ~a~~eLa-~~~vD~miVVGGknSS 294 (364)
+++.||....+... -++.+.+.|++ . +.++.+|+.++ +.|.+-=+.+.+++ ..++|++|-|||=..-
T Consensus 30 ~r~lvvt~~~~~~~g~~~~v~~~L~~----~------~i~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IiaiGGGSvi 99 (379)
T TIGR02638 30 KKALVVTDKDLIKFGVADKVTDLLDE----A------GIAYELFDEVKPNPTITVVKAGVAAFKASGADYLIAIGGGSPI 99 (379)
T ss_pred CEEEEEcCcchhhccchHHHHHHHHH----C------CCeEEEECCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCChHHH
Confidence 58888887665443 45666666653 1 12345566554 33333333333333 3579999999999999
Q ss_pred hhHHHHHHHHhh
Q 017886 295 NTSHLQEIAEDR 306 (364)
Q Consensus 295 NT~rL~eia~~~ 306 (364)
.+-|...+....
T Consensus 100 D~aKaia~~~~~ 111 (379)
T TIGR02638 100 DTAKAIGIISNN 111 (379)
T ss_pred HHHHHHHHHHhC
Confidence 999887776443
No 173
>cd06322 PBP1_ABC_sugar_binding_like_12 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=40.64 E-value=2.2e+02 Score=25.77 Aligned_cols=81 Identities=17% Similarity=0.167 Sum_probs=46.7
Q ss_pred CCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHH-HHHHHhhhhCCCEEEEEcCCCCchhHHHHHHHHh
Q 017886 227 TMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAED 305 (364)
Q Consensus 227 T~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ-~a~~eLa~~~vD~miVVGGknSSNT~rL~eia~~ 305 (364)
+.+-.-|.++.+.+++..... +-++.+.+ +.....+| +.++.|....+|.+|+.+.. +.-+...++.+++
T Consensus 8 ~~~~~~~~~~~~~i~~~~~~~------g~~~~i~~--~~~~~~~~~~~~~~~~~~~vdgiii~~~~-~~~~~~~~~~~~~ 78 (267)
T cd06322 8 TQQHPFYIELANAMKEEAKKQ------KVNLIVSI--ANQDLNKQLSDVEDFITKKVDAIVLSPVD-SKGIRAAIAKAKK 78 (267)
T ss_pred CcccHHHHHHHHHHHHHHHhc------CCEEEEec--CCCCHHHHHHHHHHHHHcCCCEEEEcCCC-hhhhHHHHHHHHH
Confidence 344455677777776543322 12333332 33345566 44555555689999997642 2223445566778
Q ss_pred hCCCeEEeCCC
Q 017886 306 RGIPSYWIDSE 316 (364)
Q Consensus 306 ~~~~t~~Ie~~ 316 (364)
.+.|...++..
T Consensus 79 ~~ipvV~~~~~ 89 (267)
T cd06322 79 AGIPVITVDIA 89 (267)
T ss_pred CCCCEEEEccc
Confidence 88999988764
No 174
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=40.60 E-value=72 Score=29.26 Aligned_cols=55 Identities=18% Similarity=0.136 Sum_probs=41.2
Q ss_pred ccccHHHH-HHHHHHHHhhhhCCCEEEEEcCC-CCchhHHHHHHHHhhCCCeEEeCCCCc
Q 017886 261 NTICDATQ-ERQDAMYKMVEEKVDLILVVGGW-NSSNTSHLQEIAEDRGIPSYWIDSEKR 318 (364)
Q Consensus 261 nTIC~AT~-~RQ~a~~eLa~~~vD~miVVGGk-nSSNT~rL~eia~~~~~~t~~Ie~~~e 318 (364)
|..++.+. .||-+. ++ .+-|++|+|-.. +|.|+...++.|++.|.+++.|.+..+
T Consensus 93 ~d~~~~~~~~~~~~~--~~-~~~Dv~I~iS~SG~t~~~i~~~~~ak~~g~~iI~iT~~~~ 149 (192)
T PRK00414 93 NDFGYDYVFSRYVEA--VG-REGDVLLGISTSGNSGNIIKAIEAARAKGMKVITLTGKDG 149 (192)
T ss_pred ccCCHHHHHHHHHHH--hC-CCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 44556554 444443 45 468999988764 788999999999999999999988643
No 175
>cd06357 PBP1_AmiC Periplasmic binding domain of amidase (AmiC) that belongs to the type I periplasmic binding fold protein family. This group includes the periplasmic binding domain of amidase (AmiC) that belongs to the type I periplasmic binding fold protein family. AmiC controls expression of the amidase operon by the ligand-triggered conformational switch. In the absence of ligand or presence of butyramide (repressor), AmiC (the ligand sensor and negative regulator) adopts an open conformation and inhibits the transcription antitermination function of AmiR by direct protein-protein interaction. In the presence of inducing ligands such as acetamide, AmiC adopts a closed conformation which disrupts a silencing AmiC-AmiR complex and the expression of amidase and other genes of the operon are induced.
Probab=40.57 E-value=37 Score=33.36 Aligned_cols=54 Identities=11% Similarity=0.203 Sum_probs=40.8
Q ss_pred cccccccccHHHHHHHHHHHHhhhhCCCEEEEEcCCCCchhHHHHHHHHhhCCCeE
Q 017886 256 HFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSY 311 (364)
Q Consensus 256 ~~~v~nTIC~AT~~RQ~a~~eLa~~~vD~miVVGGknSSNT~rL~eia~~~~~~t~ 311 (364)
++.+.||-+..+.-+ .++++|. .+=++..|||+..|+++..+..++.+.+.+.+
T Consensus 42 elv~~D~~~~p~~a~-~~a~~li-~~~~V~aiiG~~~s~~~~a~~~~~~~~~~~~~ 95 (360)
T cd06357 42 EPVEYDPGGDPDAYR-ALAERLL-REDGVRVIFGCYTSSSRKAVLPVVERHDALLW 95 (360)
T ss_pred EEEEECCCCCHHHHH-HHHHHHH-hhCCCcEEEeCccHHHHHHHHHHHHhcCceEE
Confidence 567889998887776 5566676 33346666899999999999999988876554
No 176
>PF13458 Peripla_BP_6: Periplasmic binding protein; PDB: 4EVS_A 4EY3_A 4EYG_B 4EYK_A 3H5L_B 3TD9_A 3EAF_A 1Z18_A 1Z17_A 2LIV_A ....
Probab=40.39 E-value=34 Score=32.53 Aligned_cols=98 Identities=18% Similarity=0.218 Sum_probs=58.0
Q ss_pred ccccccccccHHHHHHHHHHHHhhhhCCCEEEEEcCCCCchhHHHHHHHHhhCCCeEEeCCCCcc-CCCCcchhhh-ccc
Q 017886 255 EHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRI-GPGNKIAYKL-MHG 332 (364)
Q Consensus 255 ~~~~v~nTIC~AT~~RQ~a~~eLa~~~vD~miVVGGknSSNT~rL~eia~~~~~~t~~Ie~~~eL-~~~~~~~~~~-~~~ 332 (364)
-++.+.|+-.+++.- ++++++|. ..-.+.+|||+-.|..+..+.+++.+.+.|.+.--+..+- +.+|.|...- ...
T Consensus 43 i~l~~~D~~~~~~~a-~~~~~~l~-~~~~v~~vvg~~~s~~~~~~~~~~~~~~ip~i~~~~~~~~~~~~~~f~~~~~~~~ 120 (343)
T PF13458_consen 43 IELVVYDDGGDPAQA-VQAARKLI-DDDGVDAVVGPLSSAQAEAVAPIAEEAGIPYISPSASSPSPDSPNVFRLSPSDSQ 120 (343)
T ss_dssp EEEEEEE-TT-HHHH-HHHHHHHH-HTSTESEEEESSSHHHHHHHHHHHHHHT-EEEESSGGGGTTTHTTEEESS--HHH
T ss_pred ceeeeccCCCChHHH-HHHHHHhh-hhcCcEEEEecCCcHHHHHHHHHHHhcCcEEEEeeccCCCCCCCcEEEEeccccH
Confidence 356678888877766 46677776 3467888999999999999999999999887763322221 1223222211 111
Q ss_pred hhhhhcccCC--CCCCEEEEEeCC
Q 017886 333 ELVEKENWLP--KGQITIGITSGA 354 (364)
Q Consensus 333 ~~~~~~~wl~--~~~~~VGITAGA 354 (364)
+......|+. .+.++|+|.+..
T Consensus 121 ~~~~~~~~~~~~~g~~~v~iv~~~ 144 (343)
T PF13458_consen 121 QAAALAEYLAKKLGAKKVAIVYPD 144 (343)
T ss_dssp HHHHHHHHHHHTTTTSEEEEEEES
T ss_pred HHHHHHHHHHHHcCCcEEEEEecC
Confidence 1222223321 257899988754
No 177
>cd08187 BDH Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. The butanol dehydrogenase (BDH) is involved in the final step of the butanol formation pathway in anaerobic micro-organism. Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. Activity in the reverse direction was 50-fold lower than that in the forward direction. The NADH-BDH had higher activity with longer chained aldehydes and was inhibited by metabolites containing an adenine moiety. This protein family belongs to the so-called iron-containing alcohol dehydrogenase superfamily. Since members of this superfamily use different divalent ions, preferentially iron or zinc, it has been suggested to be renamed to family III metal-dependent polyol dehydrogenases.
Probab=40.37 E-value=99 Score=31.23 Aligned_cols=77 Identities=19% Similarity=0.229 Sum_probs=45.4
Q ss_pred ceEEEEE-cCCCCh-HHHHHHHHHHHHHHhhhcccccccccccccccccH-HHHHHH-HHHHHhhhhCCCEEEEEcCCCC
Q 017886 218 VKVGIAN-QTTMLK-GETEEIGKLVEKTMMRKFGVENVNEHFISFNTICD-ATQERQ-DAMYKMVEEKVDLILVVGGWNS 293 (364)
Q Consensus 218 ~kv~vvs-QTT~~~-~~~~~i~~~l~~~~~~~~~~~~~~~~~~v~nTIC~-AT~~RQ-~a~~eLa~~~vD~miVVGGknS 293 (364)
+|+.+|+ ++++.. ..++.+.+.|+. .+.++.+|+.++. .|...= ++++.+-...+|++|-|||=..
T Consensus 29 ~r~livt~~~~~~~~~~~~~v~~~L~~----------~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGS~ 98 (382)
T cd08187 29 KKVLLVYGGGSIKKNGLYDRVIASLKE----------AGIEVVELGGVEPNPRLETVREGIELCKEEKVDFILAVGGGSV 98 (382)
T ss_pred CEEEEEeCCcHHHhcCcHHHHHHHHHH----------cCCeEEEECCccCCCCHHHHHHHHHHHHHcCCCEEEEeCChHH
Confidence 4677775 444432 345666666653 1123456776663 222222 2233332357999999999999
Q ss_pred chhHHHHHHHH
Q 017886 294 SNTSHLQEIAE 304 (364)
Q Consensus 294 SNT~rL~eia~ 304 (364)
-.+-|.+-+..
T Consensus 99 iD~aK~ia~~~ 109 (382)
T cd08187 99 IDSAKAIAAGA 109 (382)
T ss_pred HHHHHHHHhHh
Confidence 99999876653
No 178
>cd06372 PBP1_GC_G_like Ligand-binding domain of membrane guanylyl cyclase G. This group includes the ligand-binding domain of membrane guanylyl cyclase G (GC-G) which is a sperm surface receptor and might function, similar to its sea urchin counterpart, in the early signaling event that regulates the Ca2+ influx/efflux and subsequent motility response in sperm. GC-G appears to be a pseudogene in human. Furthermore, in contrast to the other orphan receptor GCs, GC-G has a broad tissue distribution in rat, including lung, intestine, kidney, and skeletal muscle.
Probab=40.31 E-value=42 Score=33.20 Aligned_cols=63 Identities=14% Similarity=0.226 Sum_probs=46.3
Q ss_pred cccccccccHHHHHHHHHHHHhhhhCCCEEEEEcCCCCchhHHHHHHHHhhCCCeEE-eCCCCccC
Q 017886 256 HFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYW-IDSEKRIG 320 (364)
Q Consensus 256 ~~~v~nTIC~AT~~RQ~a~~eLa~~~vD~miVVGGknSSNT~rL~eia~~~~~~t~~-Ie~~~eL~ 320 (364)
++.+.||-|.....-+.+.+-+. +-.+..|||+..|+-+.-...+|...+.|-+- --+..+|.
T Consensus 43 ~~~~~D~~~~~~~a~~~~~~l~~--~~~v~aiiGp~~S~~~~av~~va~~~~iP~is~~s~s~~ls 106 (391)
T cd06372 43 EFTYTNSTCSAKESLAGFIDQVQ--KEHISALFGPACPEAAEVTGLLASQWNIPMFGFVGQTAKLD 106 (391)
T ss_pred EEEEecCCCCccHHHHHHHHHHH--hcCceEEECCCCCcHHHHHHHHHhccCccEEEeecCCcccc
Confidence 45578999988776665555443 23567799999999999999999999988653 33455564
No 179
>TIGR02764 spore_ybaN_pdaB polysaccharide deacetylase family sporulation protein PdaB. This model describes the YbaN protein family, also called PdaB and SpoVIE, of Gram-positive bacteria. Although ybaN null mutants have only a mild sporulation defect, ybaN/ytrI double mutants show drastically reducted sporulation efficiencies. This synthetic defect suggests the role of this sigmaE-controlled gene in sporulation had been masked by functional redundancy. Members of this family are homologous to a characterized polysaccharide deacetylase; the exact function this protein family is unknown.
Probab=40.10 E-value=94 Score=27.82 Aligned_cols=45 Identities=13% Similarity=0.164 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHhhCC--CCceEEecccccCHHHHHHHHHcCcEEec
Q 017886 39 VERAVQIAYEARKQFP--EEKIWITNEIIHNPTVNKRLEEMAVQNIP 83 (364)
Q Consensus 39 V~RAi~~a~~~~~~~~--~~~vy~lG~iIHN~~Vv~~L~~~Gv~~v~ 83 (364)
+++-|..+.+++++.. ..+.|..----.|+.+++.|++.|..++.
T Consensus 79 ~~~ei~~~~~~l~~~~g~~~~~fr~P~G~~~~~~~~~l~~~G~~~v~ 125 (191)
T TIGR02764 79 IKKDILRAQEIIEKLTGKKPTLFRPPSGAFNKAVLKAAESLGYTVVH 125 (191)
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEECCCcCCCHHHHHHHHHcCCeEEE
Confidence 3444455555554311 12355554556789999999999998765
No 180
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=40.01 E-value=61 Score=30.56 Aligned_cols=53 Identities=17% Similarity=0.292 Sum_probs=37.8
Q ss_pred CCchhHHHHHHHHhhCCCeEEeCCCCccCCCCcchhhhccchhhhhcccCCCCCCEEEEEeCCCCCH
Q 017886 292 NSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPKGQITIGITSGASTPD 358 (364)
Q Consensus 292 nSSNT~rL~eia~~~~~~t~~Ie~~~eL~~~~~~~~~~~~~~~~~~~~wl~~~~~~VGITAGASTP~ 358 (364)
++.=-.++++.|++++.+..-+++++. +. +. .-+++..+.-.|+||+|+-.|-
T Consensus 82 d~~ln~~i~~~a~~~~i~vNv~D~p~~-~~---f~----------~Pa~~~r~~l~iaIsT~G~sP~ 134 (210)
T COG1648 82 DEELNERIAKAARERRILVNVVDDPEL-CD---FI----------FPAIVDRGPLQIAISTGGKSPV 134 (210)
T ss_pred CHHHHHHHHHHHHHhCCceeccCCccc-Cc---ee----------cceeeccCCeEEEEECCCCChH
Confidence 334446899999999999998888874 21 00 0044545788999999998773
No 181
>PF01904 DUF72: Protein of unknown function DUF72; InterPro: IPR002763 The function of this family is unknown. Aquifex aeolicus has two copies of this protein. A probable aspartyl-tRNA synthetase from Escherichia coli [] belongs to this group.; PDB: 1VPY_A 1ZTV_A 1VPQ_A.
Probab=39.98 E-value=89 Score=29.47 Aligned_cols=77 Identities=9% Similarity=-0.037 Sum_probs=42.4
Q ss_pred cccccCHHHHHHHHHcCcEEecCC-cc---ccccccccCCCEEEEcCCCCCHHH-----HHHHHhcCCcEEeccCchhHH
Q 017886 62 NEIIHNPTVNKRLEEMAVQNIPVE-EG---KKQFDVVNKGDVVVLPAFGAAVEE-----MVTLNNKNVQIVDTTCPWVSK 132 (364)
Q Consensus 62 G~iIHN~~Vv~~L~~~Gv~~v~~~-~~---~~~~~~l~~g~~VIIrAHGv~~~v-----~~~l~~~g~~iiDaTCP~V~k 132 (364)
++=-.++++.+.|++.|+..+-.. .. .....+...++.+.+|-||-+... |.. +--..
T Consensus 126 ~~sW~~~~~~~~l~~~~~~~v~~d~~~~~~~p~~~~~~~~~~~y~RlhG~~~~~~~~~~Ys~-------------~eL~~ 192 (230)
T PF01904_consen 126 HPSWFTEEVFELLREHGVALVIADSPRLPSLPPPEPQTTPDFAYVRLHGRNGEGWYDYRYSD-------------EELEE 192 (230)
T ss_dssp BGGGGCHHHHHHHHHTT-EEEEEE---BTTC------SSTTEEEEEE--S-TTTTTB----H-------------HHHHH
T ss_pred CcchhhHHHHHHHHHcCCEEEEeCCcccCCCCCcccccCCCCeEEeeccCcccccccccCCH-------------HHHHH
Confidence 432338999999999999977431 11 111111112478999999998651 111 22355
Q ss_pred HHHHHHHHhhCCCeEEEEe
Q 017886 133 VWTSVEKHKKGDYTSIIHG 151 (364)
Q Consensus 133 v~~~v~~~~~~Gy~iIIiG 151 (364)
+-+.++++.++|..|.++=
T Consensus 193 ~a~~i~~~~~~~~~v~v~f 211 (230)
T PF01904_consen 193 WAERIRAWAAQGKEVYVFF 211 (230)
T ss_dssp HHHHHHHHHTCSSEEEEEE
T ss_pred HHHHHHHHHHcCCCEEEEE
Confidence 6667777888887776654
No 182
>PRK15404 leucine ABC transporter subunit substrate-binding protein LivK; Provisional
Probab=39.92 E-value=47 Score=33.03 Aligned_cols=62 Identities=24% Similarity=0.323 Sum_probs=46.1
Q ss_pred ccccccccccHHHHHHHHHHHHhhhhCCCEEEEEcCCCCchhHHHHHHHHhhCCCeEEeC-CCCcc
Q 017886 255 EHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWID-SEKRI 319 (364)
Q Consensus 255 ~~~~v~nTIC~AT~~RQ~a~~eLa~~~vD~miVVGGknSSNT~rL~eia~~~~~~t~~Ie-~~~eL 319 (364)
-++.+.||-.++..-+ +++++|. .+ ++..|||+..|+.+.-+.+++.+.+.|.+.-. +..+|
T Consensus 67 ielv~~D~~~~p~~a~-~~~~~Li-~~-~V~~iiG~~~s~~~~a~~~~~~~~~ip~i~~~s~~~~l 129 (369)
T PRK15404 67 LEGVEYDDACDPKQAV-AVANKVV-ND-GIKYVIGHLCSSSTQPASDIYEDEGILMITPAATAPEL 129 (369)
T ss_pred EEEEeecCCCCHHHHH-HHHHHHH-hC-CceEEEcCCCchhHHHhHHHHHHCCCeEEecCCCCHHH
Confidence 3667888888776655 4668887 43 67778999999999999999999988766533 34444
No 183
>PRK02287 hypothetical protein; Provisional
Probab=39.70 E-value=65 Score=29.78 Aligned_cols=50 Identities=12% Similarity=0.323 Sum_probs=36.4
Q ss_pred HHHHHHcCcEEecCCccccccccccCCCEEEEcCCC---CCHHHHHHHHhcCCcEEecc
Q 017886 71 NKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFG---AAVEEMVTLNNKNVQIVDTT 126 (364)
Q Consensus 71 v~~L~~~Gv~~v~~~~~~~~~~~l~~g~~VIIrAHG---v~~~v~~~l~~~g~~iiDaT 126 (364)
..+|.+.|....-.. ...++.| .||+..+| ++|+..+.+++.|+.+||++
T Consensus 19 g~KL~r~g~~~~~~~-----~~~~~~g-~IvL~P~a~~~lSp~D~~~~~~~Gi~vlDcS 71 (171)
T PRK02287 19 ARKLVRFGLARLVRS-----IRKIPRG-SIVLNPFAEKALSPADRDIVEKRGIVALDCS 71 (171)
T ss_pred HHHHHhCCceeEecc-----cccCCCC-eEEECCCCCcCcCHHHHHhhhhCCEEEEECC
Confidence 367888887754321 2333444 37777776 57999999999999999998
No 184
>PRK04175 rpl7ae 50S ribosomal protein L7Ae; Validated
Probab=39.43 E-value=68 Score=27.68 Aligned_cols=41 Identities=22% Similarity=0.486 Sum_probs=29.6
Q ss_pred hCCCEEEEEcCCCCchh-HHHHHHHHhhCCCeEEeCCCCccC
Q 017886 280 EKVDLILVVGGWNSSNT-SHLQEIAEDRGIPSYWIDSEKRIG 320 (364)
Q Consensus 280 ~~vD~miVVGGknSSNT-~rL~eia~~~~~~t~~Ie~~~eL~ 320 (364)
+++-++|+-++-...++ .++-.+|++.+.|.+++.+-.||-
T Consensus 45 gkakLVilA~D~s~~~i~~~~~~lc~~~~Vp~~~~~tk~eLG 86 (122)
T PRK04175 45 GIAKLVVIAEDVDPEEIVAHLPLLCEEKKIPYVYVPSKKDLG 86 (122)
T ss_pred CCccEEEEeCCCChHHHHHHHHHHHHHcCCCEEEECCHHHHH
Confidence 34455554444444443 799999999999999999988885
No 185
>PF12850 Metallophos_2: Calcineurin-like phosphoesterase superfamily domain; InterPro: IPR024654 Domains in this entry are members of the calcineurin-like phosphoesterase domain superfamily [].; PDB: 2GJU_A 1Z2W_A 1Z2X_B 3PSO_B 3PSN_B 1W24_A 2R17_B 3QFN_B 3QFO_A 3QFM_A ....
Probab=39.41 E-value=1.2e+02 Score=25.31 Aligned_cols=98 Identities=12% Similarity=0.135 Sum_probs=56.8
Q ss_pred HHHHHHHHhhCCCCceEEecccccCHHHHHHHHHcCcEEecCCcccccccc------c------cCCCEEEEcCCCCCHH
Q 017886 43 VQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDV------V------NKGDVVVLPAFGAAVE 110 (364)
Q Consensus 43 i~~a~~~~~~~~~~~vy~lG~iIHN~~Vv~~L~~~Gv~~v~~~~~~~~~~~------l------~~g~~VIIrAHGv~~~ 110 (364)
++.+.+.+++ ..-|+.+|+|+...++++.|++..+.+|...-+...+.+ + .-+..-++=.||-+..
T Consensus 16 ~~~~~~~~~~--~d~vi~~GDi~~~~~~~~~~~~~~~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~i~~~H~~~~~ 93 (156)
T PF12850_consen 16 LEAVLEYINE--PDFVIILGDIFDPEEVLELLRDIPVYVVRGNHDNWAFPNENDEEYLLDALRLTIDGFKILLSHGHPYD 93 (156)
T ss_dssp HHHHHHHHTT--ESEEEEES-SCSHHHHHHHHHHHEEEEE--CCHSTHHHSEECTCSSHSEEEEEETTEEEEEESSTSSS
T ss_pred HHHHHHHhcC--CCEEEECCCchhHHHHHHHHhcCCEEEEeCCcccccchhhhhccccccceeeeecCCeEEEECCCCcc
Confidence 4444444432 357999999999999999999988888875321100000 0 0022334555654333
Q ss_pred HHHHHHhcCCcEEeccCchhHHHHHHHHHHhhCCCeEEEEecCCCceeee
Q 017886 111 EMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVA 160 (364)
Q Consensus 111 v~~~l~~~g~~iiDaTCP~V~kv~~~v~~~~~~Gy~iIIiG~~~HpEv~g 160 (364)
+. .......+.+...++..++.|+.-.|.+.-
T Consensus 94 -----------------~~-~~~~~~~~~~~~~~~~~~~~GH~H~~~~~~ 125 (156)
T PF12850_consen 94 -----------------VQ-WDPAELREILSRENVDLVLHGHTHRPQVFK 125 (156)
T ss_dssp -----------------ST-TTHHHHHHHHHHTTSSEEEESSSSSEEEEE
T ss_pred -----------------cc-cChhhhhhhhcccCCCEEEcCCcccceEEE
Confidence 10 112223355668899999999998888854
No 186
>cd06270 PBP1_GalS_like Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalS is a dimeric protein like GalR,and its major role is in regulating expression of the high-affinity galactose transporter encoded by the mgl operon, whereas GalR is the exclusive regulator of galactose permease, the low-affinity galactose transporter. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are homologous to the periplasmic sugar bindi
Probab=39.40 E-value=2.1e+02 Score=26.01 Aligned_cols=76 Identities=14% Similarity=0.098 Sum_probs=43.1
Q ss_pred hHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHHHH-HHHhhhhCCCEEEEEcCCCCchhHHHHHHHHhhCC
Q 017886 230 KGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDA-MYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGI 308 (364)
Q Consensus 230 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ~a-~~eLa~~~vD~miVVGGknSSNT~rL~eia~~~~~ 308 (364)
-.-|.++.+-+.+...+. + -.+.+++ ++.-.++|.. +..|.+..+|.+|+.+...+.. +++-+.+.|.
T Consensus 11 ~~~~~~~~~g~~~~a~~~-g-----~~~~~~~--~~~~~~~~~~~i~~~~~~~vdgii~~~~~~~~~---~~~~~~~~~i 79 (268)
T cd06270 11 GPFFGPLLSGVESVARKA-G-----KHLIITA--GHHSAEKEREAIEFLLERRCDALILHSKALSDD---ELIELAAQVP 79 (268)
T ss_pred CcchHHHHHHHHHHHHHC-C-----CEEEEEe--CCCchHHHHHHHHHHHHcCCCEEEEecCCCCHH---HHHHHhhCCC
Confidence 345666666665543332 2 2233322 2222345533 4445457899999998654432 2445567889
Q ss_pred CeEEeCCC
Q 017886 309 PSYWIDSE 316 (364)
Q Consensus 309 ~t~~Ie~~ 316 (364)
|...+++.
T Consensus 80 pvV~~~~~ 87 (268)
T cd06270 80 PLVLINRH 87 (268)
T ss_pred CEEEEecc
Confidence 99888874
No 187
>COG4822 CbiK Cobalamin biosynthesis protein CbiK, Co2+ chelatase [Coenzyme metabolism]
Probab=39.17 E-value=1.1e+02 Score=29.82 Aligned_cols=44 Identities=23% Similarity=0.282 Sum_probs=34.7
Q ss_pred EEEcCCCCCHHHHHHHHhcCCcEEeccCchhHHHHHHHHHHhhCCCeEEEEe
Q 017886 100 VVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHG 151 (364)
Q Consensus 100 VIIrAHGv~~~v~~~l~~~g~~iiDaTCP~V~kv~~~v~~~~~~Gy~iIIiG 151 (364)
=++||+ .|..+.+.|++|.-.++|+. ++.-.++.++||+=|||-
T Consensus 37 dvfrAf-TS~kIIkkLK~rdgi~~dTP-------~~aL~klk~~gy~eviiQ 80 (265)
T COG4822 37 DVFRAF-TSRKIIKKLKERDGIDFDTP-------IQALNKLKDQGYEEVIIQ 80 (265)
T ss_pred HHHHHH-hHHHHHHHHHhhcCcccCCH-------HHHHHHHHHccchheeee
Confidence 357887 57789999999987888885 455577889999987764
No 188
>PF13986 DUF4224: Domain of unknown function (DUF4224)
Probab=39.16 E-value=28 Score=25.25 Aligned_cols=26 Identities=12% Similarity=0.118 Sum_probs=20.9
Q ss_pred HHHHHHHcCcEEecCCccccccccccCCCEEEEcCC
Q 017886 70 VNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAF 105 (364)
Q Consensus 70 Vv~~L~~~Gv~~v~~~~~~~~~~~l~~g~~VIIrAH 105 (364)
.++.|+++|+.++.. ++|..+|-|+|
T Consensus 20 Q~~~L~~~Gi~~~~~----------~~G~p~V~r~~ 45 (47)
T PF13986_consen 20 QIRWLRRNGIPFVVR----------ADGRPIVTRSH 45 (47)
T ss_pred HHHHHHHCCCeeEEC----------CCCCEEeeHHH
Confidence 468999999999975 46878888876
No 189
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=39.14 E-value=2.4e+02 Score=23.86 Aligned_cols=85 Identities=12% Similarity=0.086 Sum_probs=48.7
Q ss_pred ceEEecccccCHHHHHHHHHcCcEEecCCccccccccccCCCEEEEcCCCCCHHHHHHHHhcCCcEEe----ccCchhHH
Q 017886 57 KIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVD----TTCPWVSK 132 (364)
Q Consensus 57 ~vy~lG~iIHN~~Vv~~L~~~Gv~~v~~~~~~~~~~~l~~g~~VIIrAHGv~~~v~~~l~~~g~~iiD----aTCP~V~k 132 (364)
.+++-|.| +|.-++.|.+.|+++|=.. =|+|.. ...+-..++.+.+++.|+..+. ..=+--..
T Consensus 8 ~~~vs~Q~--~~~d~~~la~~GfktVInl--------Rpd~E~---~~qp~~~~~~~~a~~~Gl~y~~iPv~~~~~~~~~ 74 (110)
T PF04273_consen 8 DLSVSGQP--SPEDLAQLAAQGFKTVINL--------RPDGEE---PGQPSSAEEAAAAEALGLQYVHIPVDGGAITEED 74 (110)
T ss_dssp TEEEECS----HHHHHHHHHCT--EEEE---------S-TTST---TT-T-HHCHHHHHHHCT-EEEE----TTT--HHH
T ss_pred CeEECCCC--CHHHHHHHHHCCCcEEEEC--------CCCCCC---CCCCCHHHHHHHHHHcCCeEEEeecCCCCCCHHH
Confidence 57888877 8889999999999987321 012210 1112233467889999999854 33355566
Q ss_pred HHHHHHHHhhCCCeEEEEecCC
Q 017886 133 VWTSVEKHKKGDYTSIIHGKYS 154 (364)
Q Consensus 133 v~~~v~~~~~~Gy~iIIiG~~~ 154 (364)
+....+-+....+.|+++...+
T Consensus 75 v~~f~~~l~~~~~Pvl~hC~sG 96 (110)
T PF04273_consen 75 VEAFADALESLPKPVLAHCRSG 96 (110)
T ss_dssp HHHHHHHHHTTTTSEEEE-SCS
T ss_pred HHHHHHHHHhCCCCEEEECCCC
Confidence 6666666766677888887543
No 190
>cd06347 PBP1_ABC_ligand_binding_like_12 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=38.93 E-value=57 Score=30.82 Aligned_cols=58 Identities=17% Similarity=0.279 Sum_probs=41.9
Q ss_pred cccccccccHHHHHHHHHHHHhhhhCCCEEEEEcCCCCchhHHHHHHHHhhCCCeEEeCC
Q 017886 256 HFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDS 315 (364)
Q Consensus 256 ~~~v~nTIC~AT~~RQ~a~~eLa~~~vD~miVVGGknSSNT~rL~eia~~~~~~t~~Ie~ 315 (364)
++.+.|+-|+..... +++++|..+ -.+..|||+..|.-+..+.+++++.+.|.+....
T Consensus 42 ~~~~~D~~~~~~~~~-~~~~~li~~-~~v~aiiG~~~s~~~~~v~~~~~~~~ip~i~~~~ 99 (334)
T cd06347 42 ELVVEDNKSDKEEAA-NAATRLIDQ-DKVVAIIGPVTSGATLAAGPIAEDAKVPMITPSA 99 (334)
T ss_pred EEEEecCCCChHHHH-HHHHHHhcc-cCeEEEEcCCccHhHHHhHHHHHHCCCeEEcCCC
Confidence 566789988876665 455666532 2444458888888888999999999988776543
No 191
>TIGR03407 urea_ABC_UrtA urea ABC transporter, urea binding protein. Members of this protein family are ABC transporter substrate-binding proteins associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. Members of this protein family tend to have the twin-arginine signal for Sec-independent transport across the plasma membrane.
Probab=38.82 E-value=40 Score=33.12 Aligned_cols=54 Identities=13% Similarity=0.135 Sum_probs=40.5
Q ss_pred ccccccccccHHHHHHHHHHHHhhhhCCCEEEEEcCCCCchhHHHHHHHHhhCCCe
Q 017886 255 EHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPS 310 (364)
Q Consensus 255 ~~~~v~nTIC~AT~~RQ~a~~eLa~~~vD~miVVGGknSSNT~rL~eia~~~~~~t 310 (364)
-++.+.||=|+++.-. .++++|. .+=.+.+|||+..|+.+..+..++.+.+.+.
T Consensus 42 i~l~~~Dd~~~p~~a~-~~a~~Lv-~~~~V~~iiG~~~S~~~~a~~~~~~~~~~~~ 95 (359)
T TIGR03407 42 IEPVVEDGASDWPTFA-EKARKLI-TQDKVAAVFGCWTSASRKAVLPVFEENNGLL 95 (359)
T ss_pred EEEEEeCCCCCHHHHH-HHHHHHH-hhCCCcEEEcCCcHHHHHHHHHHHhccCCce
Confidence 3567889999887766 4566676 2334667789999999999999998876543
No 192
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=38.76 E-value=2.3e+02 Score=30.06 Aligned_cols=73 Identities=18% Similarity=0.213 Sum_probs=39.7
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHHHHHHHhh--------hhCCCEEEE
Q 017886 216 DLVKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMV--------EEKVDLILV 287 (364)
Q Consensus 216 ~~~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ~a~~eLa--------~~~vD~miV 287 (364)
.+++||||+ .-+-.-+.+|+..++.+||. -++.++.| +-+-.+|..+++ .+++|++||
T Consensus 134 ~p~~IGVIT--S~tgAairDIl~~~~rR~P~--------~~viv~pt----~VQG~~A~~eIv~aI~~an~~~~~DvlIV 199 (440)
T COG1570 134 FPKKIGVIT--SPTGAALRDILHTLSRRFPS--------VEVIVYPT----LVQGEGAAEEIVEAIERANQRGDVDVLIV 199 (440)
T ss_pred CCCeEEEEc--CCchHHHHHHHHHHHhhCCC--------CeEEEEec----cccCCCcHHHHHHHHHHhhccCCCCEEEE
Confidence 447899974 44456677888777765332 12333333 222222222211 235999999
Q ss_pred EcCCCC------chhHHHHHH
Q 017886 288 VGGWNS------SNTSHLQEI 302 (364)
Q Consensus 288 VGGknS------SNT~rL~ei 302 (364)
.=|=.| =|--.|+.-
T Consensus 200 aRGGGSiEDLW~FNdE~vaRA 220 (440)
T COG1570 200 ARGGGSIEDLWAFNDEIVARA 220 (440)
T ss_pred ecCcchHHHHhccChHHHHHH
Confidence 966554 355555443
No 193
>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily. Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.
Probab=38.68 E-value=2.8e+02 Score=25.25 Aligned_cols=93 Identities=17% Similarity=0.201 Sum_probs=48.6
Q ss_pred eEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHH-HHHHHhhhhCCCEEEEEcCCCCchhH
Q 017886 219 KVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSNTS 297 (364)
Q Consensus 219 kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ-~a~~eLa~~~vD~miVVGGknSSNT~ 297 (364)
||+++... ++-.-|..+.+.+.....+. +......++.++++ .....+| +.++.|...++|.+|+.+... ....
T Consensus 1 ~Ig~i~~~-~~~~~~~~~~~~i~~~~~~~-~~~g~~~~l~i~~~--~~~~~~~~~~~~~~~~~~vdgiIi~~~~~-~~~~ 75 (272)
T cd06300 1 KIGLSNSY-AGNTWRAQMLDEFKAQAKEL-KKAGLISEFIVTSA--DGDVAQQIADIRNLIAQGVDAIIINPASP-TALN 75 (272)
T ss_pred CeEEeccc-cCChHHHHHHHHHHHHHHhh-hccCCeeEEEEecC--CCCHHHHHHHHHHHHHcCCCEEEEeCCCh-hhhH
Confidence 35555532 34455666776665532222 00000002333322 2233444 444455456899999987432 2234
Q ss_pred HHHHHHHhhCCCeEEeCCC
Q 017886 298 HLQEIAEDRGIPSYWIDSE 316 (364)
Q Consensus 298 rL~eia~~~~~~t~~Ie~~ 316 (364)
.+++.+++.+.|...+.+.
T Consensus 76 ~~l~~~~~~~iPvv~~~~~ 94 (272)
T cd06300 76 PVIEEACEAGIPVVSFDGT 94 (272)
T ss_pred HHHHHHHHCCCeEEEEecC
Confidence 4666777888999888764
No 194
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=38.63 E-value=4.4e+02 Score=26.77 Aligned_cols=51 Identities=24% Similarity=0.302 Sum_probs=34.8
Q ss_pred ccccccccHHHHHHHHHHHHhhhhCCCEEEEEcCCCCchhHHHHHHHHhhCCCeEEeCC
Q 017886 257 FISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDS 315 (364)
Q Consensus 257 ~~v~nTIC~AT~~RQ~a~~eLa~~~vD~miVVGGknSSNT~rL~eia~~~~~~t~~Ie~ 315 (364)
+.+.-++.+.. .+..++ +-+| ++=||+++..|+.-|-+++ +.+.|..+=..
T Consensus 158 l~v~tev~d~~-----~~~~l~-~~vd-~lqIgAr~~~N~~LL~~va-~~~kPViLk~G 208 (335)
T PRK08673 158 LPIVTEVMDPR-----DVELVA-EYVD-ILQIGARNMQNFDLLKEVG-KTNKPVLLKRG 208 (335)
T ss_pred CcEEEeeCCHH-----HHHHHH-HhCC-eEEECcccccCHHHHHHHH-cCCCcEEEeCC
Confidence 45666666653 233344 3467 8899999999999888888 46677764333
No 195
>COG0205 PfkA 6-phosphofructokinase [Carbohydrate transport and metabolism]
Probab=38.53 E-value=61 Score=33.06 Aligned_cols=43 Identities=30% Similarity=0.439 Sum_probs=30.3
Q ss_pred HHHHHHHHhhhhCCCEEEEEcCCCCchhHHHHHHHHhhCCCeEEe
Q 017886 269 ERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWI 313 (364)
Q Consensus 269 ~RQ~a~~eLa~~~vD~miVVGGknSSNT~rL~eia~~~~~~t~~I 313 (364)
.|..+++.|.+...|.+|||||-.|.=+.++ +++..+.+.+.|
T Consensus 82 ~~~~~~~~l~~~gId~LvvIGGDgS~~gA~~--Lae~~~i~vVGv 124 (347)
T COG0205 82 GRKVAAENLKKLGIDALVVIGGDGSYTGAAL--LAEEGGIPVVGV 124 (347)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCChHHHHHH--HHHhcCCcEEec
Confidence 5567888887678999999999998755543 444444566554
No 196
>cd00419 Ferrochelatase_C Ferrochelatase, C-terminal domain: Ferrochelatase (protoheme ferrolyase or HemH) is the terminal enzyme of the heme biosynthetic pathway. It catalyzes the insertion of ferrous iron into the protoporphyrin IX ring yielding protoheme. This enzyme is ubiquitous in nature and widely distributed in bacteria and eukaryotes. Recently, some archaeal members have been identified. The oligomeric state of these enzymes varies depending on the presence of a dimerization motif at the C-terminus.
Probab=38.20 E-value=54 Score=28.55 Aligned_cols=37 Identities=16% Similarity=0.256 Sum_probs=27.9
Q ss_pred CCCEEEEcCCCCCHHHHHHHHhcCCcEEeccCchhHHHHHHHHHHhhC
Q 017886 96 KGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKG 143 (364)
Q Consensus 96 ~g~~VIIrAHGv~~~v~~~l~~~g~~iiDaTCP~V~kv~~~v~~~~~~ 143 (364)
+.+.+||+|||+|....+ + --|+...+...++...+.
T Consensus 17 ~~~~llfsaHgiP~~~~~----~-------gd~Y~~~~~~~~~~v~~~ 53 (135)
T cd00419 17 EKDRLLFSAHGLPVRDIK----K-------GDPYPDQCEETARLVAER 53 (135)
T ss_pred CCCEEEEEcCCCHHHHhh----C-------CCCHHHHHHHHHHHHHHH
Confidence 356799999999987665 2 247888888887777653
No 197
>PRK11303 DNA-binding transcriptional regulator FruR; Provisional
Probab=38.19 E-value=3.5e+02 Score=25.56 Aligned_cols=89 Identities=13% Similarity=0.277 Sum_probs=48.9
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHH-HHHHHhhhhCCCEEEEEcCCCCchh
Q 017886 218 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSNT 296 (364)
Q Consensus 218 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ-~a~~eLa~~~vD~miVVGGknSSNT 296 (364)
..|+++.-. ++-.-|..+.+.+.+...+. + -++.++++ ..-.++| +.+..|....+|.+|+.+.... +.
T Consensus 62 ~~Igvv~~~-~~~~~~~~l~~gi~~~~~~~-g-----~~~~~~~~--~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~-~~ 131 (328)
T PRK11303 62 RSIGLIIPD-LENTSYARIAKYLERQARQR-G-----YQLLIACS--DDQPDNEMRCAEHLLQRQVDALIVSTSLPP-EH 131 (328)
T ss_pred ceEEEEeCC-CCCchHHHHHHHHHHHHHHc-C-----CEEEEEeC--CCCHHHHHHHHHHHHHcCCCEEEEcCCCCC-Ch
Confidence 468887643 34445777777776543322 1 22333222 1122344 3444454568999999875332 23
Q ss_pred HHHHHHHHhhCCCeEEeCCCC
Q 017886 297 SHLQEIAEDRGIPSYWIDSEK 317 (364)
Q Consensus 297 ~rL~eia~~~~~~t~~Ie~~~ 317 (364)
.+++...+.+.|..+|+...
T Consensus 132 -~~~~~l~~~~iPvV~v~~~~ 151 (328)
T PRK11303 132 -PFYQRLQNDGLPIIALDRAL 151 (328)
T ss_pred -HHHHHHHhcCCCEEEECCCC
Confidence 33344456789999998753
No 198
>PF14359 DUF4406: Domain of unknown function (DUF4406)
Probab=38.00 E-value=42 Score=27.55 Aligned_cols=31 Identities=32% Similarity=0.692 Sum_probs=26.6
Q ss_pred CCCEEEEEcCCCCchhHHH-HHHHHhhCCCeE
Q 017886 281 KVDLILVVGGWNSSNTSHL-QEIAEDRGIPSY 311 (364)
Q Consensus 281 ~vD~miVVGGknSSNT~rL-~eia~~~~~~t~ 311 (364)
.||.|+..+|...|..-+| +.+|++.|.+.+
T Consensus 59 ~cD~i~~l~gWe~S~GA~~E~~~A~~lGl~V~ 90 (92)
T PF14359_consen 59 DCDAIYMLPGWENSRGARLEHELAKKLGLPVI 90 (92)
T ss_pred hCCEEEEcCCcccCcchHHHHHHHHHCCCeEe
Confidence 7999999999888888776 778888888765
No 199
>cd06359 PBP1_Nba_like Type I periplasmic binding component of active transport systems that are predicted to be involved in 2-nitrobenzoic acid degradation pathway. This group includes the type I periplasmic binding component of active transport systems that are predicted to be involved in 2-nitrobenzoic acid degradation pathway; their substrate specificities are not well characterized.
Probab=37.85 E-value=52 Score=31.66 Aligned_cols=57 Identities=9% Similarity=-0.000 Sum_probs=42.0
Q ss_pred cccccccccHHHHHHHHHHHHhhhhCCCEEEEEcCCCCchhHHHHHHHHhhCCCeEEeC
Q 017886 256 HFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWID 314 (364)
Q Consensus 256 ~~~v~nTIC~AT~~RQ~a~~eLa~~~vD~miVVGGknSSNT~rL~eia~~~~~~t~~Ie 314 (364)
++.+.||=+..+.-. +++++|. .+-.+..|||+..|+.+..+.+++.+.+.|.+...
T Consensus 40 ~l~~~D~~~~p~~a~-~~~~~lv-~~~~v~~viG~~~s~~~~a~~~~~~~~~ip~i~~~ 96 (333)
T cd06359 40 EVVVEDDGLKPDVAK-QAAERLI-KRDKVDFVTGVVFSNVLLAVVPPVLESGTFYISTN 96 (333)
T ss_pred EEEecCCCCChHHHH-HHHHHHH-hhcCCcEEEccCCcHHHHHHHHHHHHcCCeEEecC
Confidence 566778888776655 4557776 33345567798889999999999999998876553
No 200
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=37.82 E-value=1.7e+02 Score=32.26 Aligned_cols=117 Identities=9% Similarity=0.029 Sum_probs=66.8
Q ss_pred ccchHHHHHHHcCCccccc-ceEEEE--------------eCCCCCcccHHHHHHHHHHHHhh-C-CCCceEEecccccC
Q 017886 5 YTSDIIKKLKENGFEYTWG-NVKVKL--------------AESYGFCWGVERAVQIAYEARKQ-F-PEEKIWITNEIIHN 67 (364)
Q Consensus 5 y~~~~~~~~~~~~~~~~~~-~mkI~l--------------A~~~GFC~GV~RAi~~a~~~~~~-~-~~~~vy~lG~iIHN 67 (364)
....+.+.|++.|+....- .++|.- ....+..|==.+||+.+.+.+.. . .+-++|+.|+=-+
T Consensus 14 qa~~la~~L~~~G~~vi~~Pli~i~p~~~~~~l~~~l~~L~~yd~iIFTS~nAV~~~~~~l~~~~~~~~~i~AVG~~Ta- 92 (656)
T PRK06975 14 QSAALAAQLAAAGLDVLDFPLLDIAPVADDAPLRAALARLSDYALVVFVSPNAVDRALARLDAIWPHALPVAVVGPGSV- 92 (656)
T ss_pred HHHHHHHHHHHcCCCEEEcccEEeeCCCChHHHHHHHHhCCCCCEEEEECHHHHHHHHHHHHhhCccCCeEEEECHHHH-
Confidence 3467888899888654443 234321 12223333334555544443322 1 1347999997544
Q ss_pred HHHHHHHHHcCcEEecC-----------Ccc------c-cccc--c--ccCCCEEEEcCCCCCHHHHHHHHhcCCcEEec
Q 017886 68 PTVNKRLEEMAVQNIPV-----------EEG------K-KQFD--V--VNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDT 125 (364)
Q Consensus 68 ~~Vv~~L~~~Gv~~v~~-----------~~~------~-~~~~--~--l~~g~~VIIrAHGv~~~v~~~l~~~g~~iiDa 125 (364)
+.|++.|+...-. ++. . +.+. . ++...++|+|+.|-.+...+.|+++|..|.-.
T Consensus 93 ----~aL~~~Gi~~~~~~~~~P~~~~~~p~~~~~se~Ll~~l~~~~~~~~g~rVLi~rG~~gr~~L~~~L~~~Ga~V~~v 168 (656)
T PRK06975 93 ----AALARHGIAAPAHRVIAPDAPADGGEARYDSEALFAEIDAAFGALAGKRVLIVRGDGGREWLAERLREAGAEVELV 168 (656)
T ss_pred ----HHHHHcCCCCceeeccccccccCCCCCccchHHHHHhHHHhccCCCCCEEEEEcCCCCcHHHHHHHHHCCCEEEEE
Confidence 7899999863311 010 0 0111 1 22234678999999999999999999877443
Q ss_pred c
Q 017886 126 T 126 (364)
Q Consensus 126 T 126 (364)
.
T Consensus 169 ~ 169 (656)
T PRK06975 169 E 169 (656)
T ss_pred e
Confidence 3
No 201
>cd06578 HemD Uroporphyrinogen-III synthase (HemD) catalyzes the asymmetrical cyclization of tetrapyrrole (linear) to uroporphyrinogen-III, the fourth step in the biosynthesis of heme. This ubiquitous enzyme is present in eukaryotes, bacteria and archaea. Mutations in the human uroporphyrinogen-III synthase gene cause congenital erythropoietic porphyria, a recessive inborn error of metabolism also known as Gunther disease.
Probab=37.82 E-value=1.7e+02 Score=26.25 Aligned_cols=66 Identities=12% Similarity=0.050 Sum_probs=40.6
Q ss_pred CCceEEecccccCHHHHHHHHHcCcEEecCCccc--c----cccc--ccCCCEEEEcCCCCCHHHHHHHHhcCCcEEec
Q 017886 55 EEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGK--K----QFDV--VNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDT 125 (364)
Q Consensus 55 ~~~vy~lG~iIHN~~Vv~~L~~~Gv~~v~~~~~~--~----~~~~--l~~g~~VIIrAHGv~~~v~~~l~~~g~~iiDa 125 (364)
+.++|+.|+= .-+.|++.|+...-.++.. + .+.. .....++++|+-+......+.|++.|..++-.
T Consensus 78 ~~~~~avG~~-----Ta~~l~~~g~~~~~~~~~~~~~~L~~~i~~~~~~~~~il~~~g~~~~~~l~~~L~~~g~~v~~~ 151 (239)
T cd06578 78 GLKIAAVGPK-----TAEALREAGLTADFVPEEGDSEGLLELLELQDGKGKRILRPRGGRAREDLAEALRERGAEVDEV 151 (239)
T ss_pred CCEEEEECHH-----HHHHHHHcCCCceeCCCccCHHHHHHHHHhcCCCCCEEEEEcCcchhHHHHHHHHHCCCEEEEE
Confidence 4578888764 5588999998766421110 0 1111 22233455666666688899999999887543
No 202
>COG2861 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.81 E-value=48 Score=32.35 Aligned_cols=73 Identities=23% Similarity=0.182 Sum_probs=0.0
Q ss_pred HHHHHHHcCcEEecCCccccccccccCCCEEEEcCCCCCHHHHHHHHhcCCcEEec--------cCchhHHHHHHHHHHh
Q 017886 70 VNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDT--------TCPWVSKVWTSVEKHK 141 (364)
Q Consensus 70 Vv~~L~~~Gv~~v~~~~~~~~~~~l~~g~~VIIrAHGv~~~v~~~l~~~g~~iiDa--------TCP~V~kv~~~v~~~~ 141 (364)
+++.|+++|+-|+| +| -.++-+++..-+++ |+..+++ |=-.|.|=-+.+.+++
T Consensus 143 ~m~~Lk~r~l~flD------------s~----T~a~S~a~~iAk~~---gVp~~~rdvfLD~e~~~~~V~kql~~~~~~A 203 (250)
T COG2861 143 LMEALKERGLYFLD------------SG----TIANSLAGKIAKEI---GVPVIKRDVFLDDEDTEAAVLKQLDAAEKLA 203 (250)
T ss_pred HHHHHHHCCeEEEc------------cc----ccccchhhhhHhhc---CCceeeeeeeecCcCCHHHHHHHHHHHHHHH
Q ss_pred hCCCeEEEEecCCCceeeeec
Q 017886 142 KGDYTSIIHGKYSHEETVATA 162 (364)
Q Consensus 142 ~~Gy~iIIiG~~~HpEv~gi~ 162 (364)
++.-+.|-||+. ||++...+
T Consensus 204 rk~G~ai~IGh~-~~~Tv~vl 223 (250)
T COG2861 204 RKNGSAIGIGHP-HKNTVAVL 223 (250)
T ss_pred HhcCceEEecCC-chhHHHHH
No 203
>cd06350 PBP1_GPCR_family_C_like Ligand-binding domain of membrane-bound glutamate receptors that mediate excitatory transmission on the cellular surface through initial binding of glutamate and are categorized into ionotropic glutamate receptors (iGluRs) and metabotropic glutamate receptors (mGluRs). Ligand-binding domain of membrane-bound glutamate receptors that mediate excitatory transmission on the cellular surface through initial binding of glutamate and are categorized into ionotropic glutamate receptors (iGluRs) and metabotropic glutamate receptors (mGluRs). The metabotropic glutamate receptors (mGluR) are key receptors in the modulation of excitatory synaptic transmission in the central nervous system. The mGluRs are coupled to G proteins and are thus distinct from the iGluRs which internally contain ligand-gated ion channels. The mGluR structure is divided into three regions: the extracellular region, the seven-spanning transmembrane region and the cytoplasmic region. The extr
Probab=37.61 E-value=58 Score=31.20 Aligned_cols=56 Identities=16% Similarity=0.225 Sum_probs=41.4
Q ss_pred cccccccccHHHHHHHHHHHHhhhhC-------------CCEEEEEcCCCCchhHHHHHHHHhhCCCeEEe
Q 017886 256 HFISFNTICDATQERQDAMYKMVEEK-------------VDLILVVGGWNSSNTSHLQEIAEDRGIPSYWI 313 (364)
Q Consensus 256 ~~~v~nTIC~AT~~RQ~a~~eLa~~~-------------vD~miVVGGknSSNT~rL~eia~~~~~~t~~I 313 (364)
++.+.||=|....-. .++.+|. .+ -.+..|||+..|+.+..+++++.+.+.|..-.
T Consensus 53 ~l~~~D~~~~~~~a~-~~a~~li-~~~~~~~~~~~~~~~~~v~aiiG~~~S~~~~a~~~~~~~~~vp~is~ 121 (348)
T cd06350 53 GYHIYDSCCSPAVAL-RAALDLL-LSGEGTTPPYSCRKQPKVVAVIGPGSSSVSMAVAELLGLFKIPQISY 121 (348)
T ss_pred eEEEEecCCcchHHH-HHHHHHH-hcCCCCCCCCcCCCCCceEEEECCCccHHHHHHHHHHhcCcCceecc
Confidence 556788888665443 4445555 34 57888999999999999999999988876543
No 204
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=37.53 E-value=1.6e+02 Score=28.28 Aligned_cols=49 Identities=20% Similarity=0.256 Sum_probs=35.2
Q ss_pred HHHHhhhhCCCEEEEEcCC--CCchhHHHHHHHHhhCCCeE-EeCCCCccCC
Q 017886 273 AMYKMVEEKVDLILVVGGW--NSSNTSHLQEIAEDRGIPSY-WIDSEKRIGP 321 (364)
Q Consensus 273 a~~eLa~~~vD~miVVGGk--nSSNT~rL~eia~~~~~~t~-~Ie~~~eL~~ 321 (364)
.++.++..-.|+++|=|.. ...|+..|++..++...|.+ +..+.+-+.+
T Consensus 19 ~~~~~~~~gtdai~vGGS~~vt~~~~~~~v~~ik~~~lPvilfp~~~~~i~~ 70 (223)
T TIGR01768 19 IAKAAAESGTDAILIGGSQGVTYEKTDTLIEALRRYGLPIILFPSNPTNVSR 70 (223)
T ss_pred HHHHHHhcCCCEEEEcCCCcccHHHHHHHHHHHhccCCCEEEeCCCccccCc
Confidence 4455553347998766654 44699999999999888875 7777776665
No 205
>PRK09190 hypothetical protein; Provisional
Probab=37.32 E-value=55 Score=31.28 Aligned_cols=84 Identities=11% Similarity=0.166 Sum_probs=48.1
Q ss_pred CChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHHHHHHHhhhhCCCEEEEEcCCCCchhH-HHHHHHHh-
Q 017886 228 MLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTS-HLQEIAED- 305 (364)
Q Consensus 228 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ~a~~eLa~~~vD~miVVGGknSSNT~-rL~eia~~- 305 (364)
.+.+.++++-+.|.+.+....+-..+. -+.++.....+ ++ |-.+++ .+|++..--|.||+ +|...|+.
T Consensus 83 v~~~l~~~l~~~l~~ril~lLGLArRA-----GklVsG~~~V~-~a---lk~gk~-~Lvi~A~DaS~~t~kKl~~~~~~~ 152 (220)
T PRK09190 83 VPPDLADLVEALLARRALDALGLARKA-----GQVVSGFEKVD-AA---LRSGEA-AALIHASDGAADGKRKLDQARRAL 152 (220)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhhh-----CCEeecHHHHH-HH---HHcCCc-eEEEEeccCChhHHHHHHHHHHhh
Confidence 455556666666665444443321111 13333332222 22 222445 66677777777776 77778987
Q ss_pred -----hCCCeEEeCCCCccCC
Q 017886 306 -----RGIPSYWIDSEKRIGP 321 (364)
Q Consensus 306 -----~~~~t~~Ie~~~eL~~ 321 (364)
++.|.+..-+.+||..
T Consensus 153 ~~~~~~~Vp~v~~~tk~eLg~ 173 (220)
T PRK09190 153 VHETGREIPVIGLFTAAELGL 173 (220)
T ss_pred cccccCCccEEEecCHHHHHH
Confidence 7788888888888854
No 206
>cd07394 MPP_Vps29 Homo sapiens Vps29 and related proteins, metallophosphatase domain. Vps29 (vacuolar sorting protein 29), also known as vacuolar membrane protein Pep11, is a subunit of the retromer complex which is responsible for the retrieval of mannose-6-phosphate receptors (MPRs) from the endosomes for retrograde transport back to the Golgi. Vps29 has a phosphoesterase fold that acts as a protein interaction scaffold for retromer complex assembly as well as a phosphatase with specificity for the cytoplasmic tail of the MPR. The retromer includes the following 5 subunits: Vps35, Vps26, Vps29, and a dimer of the sorting nexins Vps5 (Snx1), and Vps17 (Snx2). Vps29 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily incl
Probab=37.05 E-value=2.4e+02 Score=25.38 Aligned_cols=94 Identities=14% Similarity=0.096 Sum_probs=52.5
Q ss_pred HHHHHhhCCCCceEEecccccCHHHHHHHHHcC--cEEecCCccccccccccC------CCEEEEcCCCCCHHHHHHHHh
Q 017886 46 AYEARKQFPEEKIWITNEIIHNPTVNKRLEEMA--VQNIPVEEGKKQFDVVNK------GDVVVLPAFGAAVEEMVTLNN 117 (364)
Q Consensus 46 a~~~~~~~~~~~vy~lG~iIHN~~Vv~~L~~~G--v~~v~~~~~~~~~~~l~~------g~~VIIrAHGv~~~v~~~l~~ 117 (364)
+.+.+++.+-..|+.+|+++. +++.+.|++.+ +..|..+.+.. ..+|. +..=|.=.||-+..
T Consensus 21 ~~~~~~~~~~d~iih~GDi~~-~~~~~~l~~~~~~~~~V~GN~D~~--~~lp~~~~~~~~g~~i~l~HG~~~~------- 90 (178)
T cd07394 21 FKKLLVPGKIQHVLCTGNLCS-KETYDYLKTIAPDVHIVRGDFDEN--LNYPETKVITVGQFKIGLIHGHQVV------- 90 (178)
T ss_pred HHHHhccCCCCEEEECCCCCC-HHHHHHHHhhCCceEEEECCCCcc--ccCCCcEEEEECCEEEEEEECCcCC-------
Confidence 344444311247999999976 88889998854 77777642210 02332 22233456774310
Q ss_pred cCCcEEeccCchhHHHHHHHHHHhhCCCeEEEEecCCCceeee
Q 017886 118 KNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVA 160 (364)
Q Consensus 118 ~g~~iiDaTCP~V~kv~~~v~~~~~~Gy~iIIiG~~~HpEv~g 160 (364)
|+- ......+...+.++.+++.|+.-.|.+.=
T Consensus 91 ----------~~~-~~~~~~~~~~~~~~dvii~GHTH~p~~~~ 122 (178)
T cd07394 91 ----------PWG-DPDSLAALQRQLDVDILISGHTHKFEAFE 122 (178)
T ss_pred ----------CCC-CHHHHHHHHHhcCCCEEEECCCCcceEEE
Confidence 000 01112222335688999999888897753
No 207
>cd06299 PBP1_LacI_like_13 Ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This group includes the ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This regulatory protein is a member of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial trans
Probab=37.03 E-value=2.3e+02 Score=25.53 Aligned_cols=85 Identities=22% Similarity=0.289 Sum_probs=47.3
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHHHH-HHHhhhhCCCEEEEEcCCCCchhHH
Q 017886 220 VGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDA-MYKMVEEKVDLILVVGGWNSSNTSH 298 (364)
Q Consensus 220 v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ~a-~~eLa~~~vD~miVVGGknSSNT~r 298 (364)
|+++...+ +-.-|.++.+-+.+... +.+ -++..+++ ....++|.. ++.|....+|.+|+.+...+. .
T Consensus 2 igvv~~~~-~~~~~~~~~~gi~~~~~-~~g-----~~~~~~~~--~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~---~ 69 (265)
T cd06299 2 IGVIVPDI-RNPYFASLATAIQDAAS-AAG-----YSTIIGNS--DENPETENRYLDNLLSQRVDGIIVVPHEQSA---E 69 (265)
T ss_pred EEEEecCC-CCccHHHHHHHHHHHHH-HcC-----CEEEEEeC--CCCHHHHHHHHHHHHhcCCCEEEEcCCCCCh---H
Confidence 45554332 23445666666655322 222 22333333 223455533 445555689999999865432 2
Q ss_pred HHHHHHhhCCCeEEeCCC
Q 017886 299 LQEIAEDRGIPSYWIDSE 316 (364)
Q Consensus 299 L~eia~~~~~~t~~Ie~~ 316 (364)
.++-+++.+.|...+.+.
T Consensus 70 ~~~~l~~~~ipvV~~~~~ 87 (265)
T cd06299 70 QLEDLLKRGIPVVFVDRE 87 (265)
T ss_pred HHHHHHhCCCCEEEEecc
Confidence 356666788999988874
No 208
>PRK12435 ferrochelatase; Provisional
Probab=37.01 E-value=1.2e+02 Score=30.23 Aligned_cols=82 Identities=10% Similarity=0.116 Sum_probs=51.4
Q ss_pred HHHHHHHHHhhCCCCceEEecccccCHHHHHHHHHcCcEEecCCcccccccccc----CCCEEEEcCCCCCHHHHHHHHh
Q 017886 42 AVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVN----KGDVVVLPAFGAAVEEMVTLNN 117 (364)
Q Consensus 42 Ai~~a~~~~~~~~~~~vy~lG~iIHN~~Vv~~L~~~Gv~~v~~~~~~~~~~~l~----~g~~VIIrAHGv~~~v~~~l~~ 117 (364)
..+.+.++++..+..++.++.+-=-+|.-++.|.++=-.. ++..+ +...+||+|||+|....+
T Consensus 124 ~~~~~~~~~~~~~~~~~~~i~~~~~~p~yi~a~a~~I~~~---------l~~~~~~~~~~~~llfSaHslP~~~i~---- 190 (311)
T PRK12435 124 YNKRAKEEAEKLGGPTITSIESWYDEPKFIQYWADQIKET---------FAQIPEEEREKAVLIVSAHSLPEKIIA---- 190 (311)
T ss_pred HHHHHHHHhcccCCCeEEEeCCccCChHHHHHHHHHHHHH---------HHHcCcccccceEEEEecCCCchhHhh----
Confidence 4455554444322235666666667777777776541111 22221 234799999999988765
Q ss_pred cCCcEEeccCchhHHHHHHHHHHhhC
Q 017886 118 KNVQIVDTTCPWVSKVWTSVEKHKKG 143 (364)
Q Consensus 118 ~g~~iiDaTCP~V~kv~~~v~~~~~~ 143 (364)
+| .||-..++..++...+.
T Consensus 191 ~G-------DpY~~q~~~t~~~v~~~ 209 (311)
T PRK12435 191 AG-------DPYPDQLEETADLIAEQ 209 (311)
T ss_pred CC-------CCHHHHHHHHHHHHHHH
Confidence 23 59999998888887654
No 209
>cd06294 PBP1_ycjW_transcription_regulator_like Ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors. This group includes the ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=36.92 E-value=2.9e+02 Score=24.96 Aligned_cols=81 Identities=17% Similarity=0.242 Sum_probs=44.4
Q ss_pred HHHHHHHHhh-hhCCCEEEEEcCCCCchhHHHHHHHHhhCCCeEEeCCCCccCCCCcchhh--h--ccchhhhhcccC-C
Q 017886 269 ERQDAMYKMV-EEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYK--L--MHGELVEKENWL-P 342 (364)
Q Consensus 269 ~RQ~a~~eLa-~~~vD~miVVGGknSSNT~rL~eia~~~~~~t~~Ie~~~eL~~~~~~~~~--~--~~~~~~~~~~wl-~ 342 (364)
..++.+.++. +..+|.+|+.+...+ ...++.+.+.+.|...+++..+-.. .+.|- . ..|+. .-.+| .
T Consensus 47 ~~~~~~~~~~~~~~~dgiii~~~~~~---~~~~~~~~~~~ipvV~~~~~~~~~~--~~~~v~~d~~~~g~~--~~~~l~~ 119 (270)
T cd06294 47 ELLEEVKKMIQQKRVDGFILLYSRED---DPIIDYLKEEKFPFVVIGKPEDDKE--NITYVDNDNIQAGYD--ATEYLIK 119 (270)
T ss_pred HHHHHHHHHHHHcCcCEEEEecCcCC---cHHHHHHHhcCCCEEEECCCCCCCC--CCCeEEECcHHHHHH--HHHHHHH
Confidence 3445666643 346999999875333 2445566778899999987543211 01111 0 11211 11222 1
Q ss_pred CCCCEEEEEeCCCC
Q 017886 343 KGQITIGITSGAST 356 (364)
Q Consensus 343 ~~~~~VGITAGAST 356 (364)
.|.++|++-+|.+.
T Consensus 120 ~g~~~i~~i~~~~~ 133 (270)
T cd06294 120 LGHKKIAFVGGDLD 133 (270)
T ss_pred cCCccEEEecCCcc
Confidence 36789999887554
No 210
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=36.87 E-value=45 Score=28.69 Aligned_cols=31 Identities=16% Similarity=0.423 Sum_probs=0.0
Q ss_pred cccCCCE-EEEcCCCCCHHHH---HHHHhcCCcEE
Q 017886 93 VVNKGDV-VVLPAFGAAVEEM---VTLNNKNVQIV 123 (364)
Q Consensus 93 ~l~~g~~-VIIrAHGv~~~v~---~~l~~~g~~ii 123 (364)
.+.+||+ |+|++.|-+|-+. +.++++|+.+|
T Consensus 100 ~~~~gDvli~iS~SG~s~~vi~a~~~Ak~~G~~vI 134 (138)
T PF13580_consen 100 DIRPGDVLIVISNSGNSPNVIEAAEEAKERGMKVI 134 (138)
T ss_dssp T--TT-EEEEEESSS-SHHHHHHHHHHHHTT-EEE
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEE
No 211
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=36.84 E-value=47 Score=31.49 Aligned_cols=33 Identities=24% Similarity=0.431 Sum_probs=26.5
Q ss_pred CEEEEEcCCCCchhHHHHHHHHhhCCCeEEeCCC
Q 017886 283 DLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSE 316 (364)
Q Consensus 283 D~miVVGGknSSNT~rL~eia~~~~~~t~~Ie~~ 316 (364)
|.+++-||+.+.. +-+.++|++.|.+.+++|.-
T Consensus 1 d~v~~wg~~~~~~-~~~~~~a~~~~i~~~~~E~G 33 (269)
T PF05159_consen 1 DAVVVWGDKRPYH-RAAIEVAKELGIPVIFFEDG 33 (269)
T ss_pred CEEEEECCCccHH-HHHHHHHHHhCCCEEEEecC
Confidence 7889998866544 44578999999999999964
No 212
>cd01541 PBP1_AraR Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of AraR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which i
Probab=36.35 E-value=2.9e+02 Score=25.13 Aligned_cols=85 Identities=18% Similarity=0.295 Sum_probs=49.0
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHH--HHHHH-HHHHHhhhhCCCEEEEEcCCCC---
Q 017886 220 VGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDA--TQERQ-DAMYKMVEEKVDLILVVGGWNS--- 293 (364)
Q Consensus 220 v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~v~nTIC~A--T~~RQ-~a~~eLa~~~vD~miVVGGknS--- 293 (364)
|+++..+ ++-.-|..+.+-+.+...+. + -.+. +|.+ ...+| +++++|.+..+|.+|+.++..+
T Consensus 2 igvv~~~-~~~~~~~~~~~gi~~~~~~~-g-----~~~~----~~~~~~~~~~~~~~i~~l~~~~vdgii~~~~~~~~~~ 70 (273)
T cd01541 2 IGVITTY-ISDYIFPSIIRGIESVLSEK-G-----YSLL----LASTNNDPERERKCLENMLSQGIDGLIIEPTKSALPN 70 (273)
T ss_pred eEEEeCC-ccchhHHHHHHHHHHHHHHc-C-----CEEE----EEeCCCCHHHHHHHHHHHHHcCCCEEEEecccccccc
Confidence 4555543 44555777777776643332 1 1122 2322 23445 4555666678999999876432
Q ss_pred chhHHHHHHHHhhCCCeEEeCCC
Q 017886 294 SNTSHLQEIAEDRGIPSYWIDSE 316 (364)
Q Consensus 294 SNT~rL~eia~~~~~~t~~Ie~~ 316 (364)
.+...+. -+++.+.|...+.+.
T Consensus 71 ~~~~~~~-~~~~~~ipvV~~~~~ 92 (273)
T cd01541 71 PNIDLYL-KLEKLGIPYVFINAS 92 (273)
T ss_pred ccHHHHH-HHHHCCCCEEEEecC
Confidence 2334443 456778999999865
No 213
>TIGR00441 gmhA phosphoheptose isomerase. Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.
Probab=35.94 E-value=96 Score=27.16 Aligned_cols=39 Identities=26% Similarity=0.337 Sum_probs=32.5
Q ss_pred hCCCEEEEEcCC-CCchhHHHHHHHHhhCCCeEEeCCCCc
Q 017886 280 EKVDLILVVGGW-NSSNTSHLQEIAEDRGIPSYWIDSEKR 318 (364)
Q Consensus 280 ~~vD~miVVGGk-nSSNT~rL~eia~~~~~~t~~Ie~~~e 318 (364)
.+-|++|+|... +|.++...++.|++.|.++..|.+..+
T Consensus 78 ~~~D~~i~iS~sG~t~~~~~~~~~a~~~g~~ii~iT~~~~ 117 (154)
T TIGR00441 78 QKGDVLLGISTSGNSKNVLKAIEAAKDKGMKTITLAGKDG 117 (154)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 467999999764 678888999999999999999988543
No 214
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=35.86 E-value=3.6e+02 Score=24.99 Aligned_cols=96 Identities=15% Similarity=0.088 Sum_probs=63.3
Q ss_pred cccccceEEEEeCCCCCcccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHHc-CcEEecCCccccccccccCC
Q 017886 19 EYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEM-AVQNIPVEEGKKQFDVVNKG 97 (364)
Q Consensus 19 ~~~~~~mkI~lA~~~GFC~GV~RAi~~a~~~~~~~~~~~vy~lG~iIHN~~Vv~~L~~~-Gv~~v~~~~~~~~~~~l~~g 97 (364)
.+.+.+.+|.+. .|-+=|...+...++. +..|.+..|=+| ..+..|.+. .+..+...- ..+++ .|
T Consensus 4 ~l~l~gk~vlVv------GgG~va~rk~~~Ll~~--ga~VtVvsp~~~--~~l~~l~~~~~i~~~~~~~---~~~dl-~~ 69 (205)
T TIGR01470 4 FANLEGRAVLVV------GGGDVALRKARLLLKA--GAQLRVIAEELE--SELTLLAEQGGITWLARCF---DADIL-EG 69 (205)
T ss_pred EEEcCCCeEEEE------CcCHHHHHHHHHHHHC--CCEEEEEcCCCC--HHHHHHHHcCCEEEEeCCC---CHHHh-CC
Confidence 344556677776 5667777888777774 357888888776 344556555 466665321 11233 36
Q ss_pred CEEEEcCCCCC---HHHHHHHHhcCCcEEeccCc
Q 017886 98 DVVVLPAFGAA---VEEMVTLNNKNVQIVDTTCP 128 (364)
Q Consensus 98 ~~VIIrAHGv~---~~v~~~l~~~g~~iiDaTCP 128 (364)
..+||-|-|.+ ..++..++++|+-|-.+..|
T Consensus 70 ~~lVi~at~d~~ln~~i~~~a~~~~ilvn~~d~~ 103 (205)
T TIGR01470 70 AFLVIAATDDEELNRRVAHAARARGVPVNVVDDP 103 (205)
T ss_pred cEEEEECCCCHHHHHHHHHHHHHcCCEEEECCCc
Confidence 66888888887 46788888888888666554
No 215
>cd00738 HGTP_anticodon HGTP anticodon binding domain, as found at the C-terminus of histidyl, glycyl, threonyl and prolyl tRNA synthetases, which are classified as a group of class II aminoacyl-tRNA synthetases (aaRS). In aaRSs, the anticodon binding domain is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only. This domain is also found in the accessory subunit of mitochondrial polymerase gamma (Pol gamma b).
Probab=35.84 E-value=68 Score=24.65 Aligned_cols=41 Identities=10% Similarity=0.153 Sum_probs=29.3
Q ss_pred HHHHHHhcCCcE-EeccCchhHHHHHHHHHHhhCCCe-EEEEecCC
Q 017886 111 EMVTLNNKNVQI-VDTTCPWVSKVWTSVEKHKKGDYT-SIIHGKYS 154 (364)
Q Consensus 111 v~~~l~~~g~~i-iDaTCP~V~kv~~~v~~~~~~Gy~-iIIiG~~~ 154 (364)
+.+.|+..|+.+ +|-.. .++.+..+...+.||. ++++|+..
T Consensus 23 ~~~~Lr~~g~~v~~~~~~---~~~~k~~~~a~~~g~~~~iiig~~e 65 (94)
T cd00738 23 LLNALLANGIRVLYDDRE---RKIGKKFREADLRGVPFAVVVGEDE 65 (94)
T ss_pred HHHHHHHCCCEEEecCCC---cCHhHHHHHHHhCCCCEEEEECCCh
Confidence 567788888876 55443 5777777777888965 77888643
No 216
>PRK14071 6-phosphofructokinase; Provisional
Probab=35.76 E-value=57 Score=33.22 Aligned_cols=45 Identities=20% Similarity=0.211 Sum_probs=32.1
Q ss_pred HHHHHHHHHhhhhCCCEEEEEcCCCCchhHHHHHHHHhhCCCeEEeC
Q 017886 268 QERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWID 314 (364)
Q Consensus 268 ~~RQ~a~~eLa~~~vD~miVVGGknSSNT~rL~eia~~~~~~t~~Ie 314 (364)
..+++.+..|-+..+|.+|+|||-.|-.+-+ ++++..+.+.+.|-
T Consensus 94 ~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~--~L~~~~~i~vIgiP 138 (360)
T PRK14071 94 DRSQEIIDGYHSLGLDALIGIGGDGSLAILR--RLAQQGGINLVGIP 138 (360)
T ss_pred HHHHHHHHHHHHcCCCEEEEECChhHHHHHH--HHHHhcCCcEEEec
Confidence 3567777777667899999999999987652 23333467777663
No 217
>TIGR01081 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase. Alternate name: murein tripeptide ligase
Probab=35.71 E-value=2.9e+02 Score=28.27 Aligned_cols=60 Identities=12% Similarity=0.052 Sum_probs=38.9
Q ss_pred EecccccCHHHHHHHHHcCcEEecCCccccccccccCCCEEEEcCCCCCHH--HHHHHHhcCCcEE
Q 017886 60 ITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVE--EMVTLNNKNVQIV 123 (364)
Q Consensus 60 ~lG~iIHN~~Vv~~L~~~Gv~~v~~~~~~~~~~~l~~g~~VIIrAHGv~~~--v~~~l~~~g~~ii 123 (364)
+.-+.-.++...+.|+++|+.+..... -+.+.++.-+||.+=||+|. .++.++++|+.|+
T Consensus 27 ~~~D~~~~~~~~~~l~~~gi~~~~~~~----~~~~~~~~d~vV~SpgI~~~~~~~~~a~~~~i~v~ 88 (448)
T TIGR01081 27 TGSDANVYPPMSTQLEAQGIEIIEGFD----AAQLEPKPDLVVIGNAMKRGNPCVEAVLNLNLPYT 88 (448)
T ss_pred EEECCCCCcHHHHHHHHCCCEEeCCCC----HHHCCCCCCEEEECCCCCCCCHHHHHHHHCCCCEE
Confidence 344555566566679999998875321 12222222367778899875 6788888998885
No 218
>PRK13601 putative L7Ae-like ribosomal protein; Provisional
Probab=35.68 E-value=55 Score=26.49 Aligned_cols=42 Identities=21% Similarity=0.349 Sum_probs=31.5
Q ss_pred hCCCEEEEEcCCCCchhHHHHHHHHhhCCCeEEeCCCCccCC
Q 017886 280 EKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGP 321 (364)
Q Consensus 280 ~~vD~miVVGGknSSNT~rL~eia~~~~~~t~~Ie~~~eL~~ 321 (364)
+++-++|+-.+-..+-.++|.+.|+.++.|.+++.|-.||-.
T Consensus 23 gkakLViiA~Da~~~~~k~i~~~c~~~~Vpv~~~~t~~eLG~ 64 (82)
T PRK13601 23 CNVLQVYIAKDAEEHVTKKIKELCEEKSIKIVYIDTMKELGV 64 (82)
T ss_pred CCeeEEEEeCCCCHHHHHHHHHHHHhCCCCEEEeCCHHHHHH
Confidence 456666666665554455888999999999999999888853
No 219
>cd00363 PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to PFK family that includes ATP- and pyrophosphate (PPi)- dependent phosphofructokinases. Some members evolved by gene duplication and thus have a large C-terminal/N-terminal extension comprising a second PFK domain. Generally, ATP-PFKs are allosteric homotetramers, and PPi-PFKs are dimeric and nonallosteric except for plant PPi-PFKs which are allosteric heterotetramers.
Probab=35.63 E-value=54 Score=33.02 Aligned_cols=47 Identities=19% Similarity=0.210 Sum_probs=35.8
Q ss_pred HHHHHHHHHHhhhhCCCEEEEEcCCCCchhH-HHHHHHHhhC--CCeEEe
Q 017886 267 TQERQDAMYKMVEEKVDLILVVGGWNSSNTS-HLQEIAEDRG--IPSYWI 313 (364)
Q Consensus 267 T~~RQ~a~~eLa~~~vD~miVVGGknSSNT~-rL~eia~~~~--~~t~~I 313 (364)
...++.+++.|-+..+|.+++|||-.|-.+- +|.|.+++.+ .+...|
T Consensus 78 ~~~~~~~~~~l~~~~I~~Lv~IGGd~s~~~a~~L~e~~~~~~~~i~vigi 127 (338)
T cd00363 78 EEGRAKAAENLKKHGIDALVVIGGDGSYTGADLLTEEWPSKYQGFNVIGL 127 (338)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCHHHHHHHHHHHHHHHhcCCCccEEEe
Confidence 4456777777766789999999999998665 8899887764 455555
No 220
>cd08173 Gro1PDH Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH, EC 1.1.1.261) plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids. It catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. The activity is zinc-dependent. One characteristic feature of archaea is that their cellular membrane has an ether linkage between the glycerol backbone and the hydrocarbon residues. The polar lipids of the members of Archaea consist of di- and tetraethers of glycerol with isoprenoid alcohols bound at the sn-2 and sn-3 positions of the glycerol moiety. The archaeal polar lipids have the enantiomeric configuration of a glycerophosph
Probab=35.36 E-value=1.7e+02 Score=29.01 Aligned_cols=87 Identities=16% Similarity=0.203 Sum_probs=50.7
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHHHHHHHhhhhCCCEEEEEcCCCCchhH
Q 017886 218 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTS 297 (364)
Q Consensus 218 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ~a~~eLa~~~vD~miVVGGknSSNT~ 297 (364)
+++.+|.-.+....-++.+.+.|++ . + + ...+ +...=+..+-+|-- ..+...++|++|-|||=..-.+-
T Consensus 26 ~~~liv~d~~~~~~~~~~v~~~l~~----~-~-~--~~~~-~~~~~~~~~v~~~~--~~~~~~~~d~iIaiGGGs~~D~a 94 (339)
T cd08173 26 GRVLVVTGPTTKSIAGKKVEALLED----E-G-E--VDVV-IVEDATYEEVEKVE--SSARDIGADFVIGVGGGRVIDVA 94 (339)
T ss_pred CeEEEEECCchHHHHHHHHHHHHHh----c-C-C--eEEE-EeCCCCHHHHHHHH--HHhhhcCCCEEEEeCCchHHHHH
Confidence 4788888766655445555555543 1 1 0 0111 11112334433332 22222469999999999999999
Q ss_pred HHHHHHHhhCCCeEEeCCCC
Q 017886 298 HLQEIAEDRGIPSYWIDSEK 317 (364)
Q Consensus 298 rL~eia~~~~~~t~~Ie~~~ 317 (364)
|.+-. ..+.|-+.|-|..
T Consensus 95 K~~a~--~~~~p~i~iPTT~ 112 (339)
T cd08173 95 KVAAY--KLGIPFISVPTAA 112 (339)
T ss_pred HHHHH--hcCCCEEEecCcc
Confidence 98764 3567888887653
No 221
>PRK00002 aroB 3-dehydroquinate synthase; Reviewed
Probab=35.06 E-value=1.6e+02 Score=29.45 Aligned_cols=92 Identities=17% Similarity=0.191 Sum_probs=55.7
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHHHHHHHhhh-h---CCCEEEEEcCCCC
Q 017886 218 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVE-E---KVDLILVVGGWNS 293 (364)
Q Consensus 218 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ~a~~eLa~-~---~vD~miVVGGknS 293 (364)
+++.+|+..+....-.+.+.+.|+. . +.+ ...+.+.+.-++.|.+-=+.+.+.+. . +.|++|-|||=..
T Consensus 32 ~~~livtd~~~~~~~~~~v~~~L~~----~-gi~--~~~~~~~~~e~~~~~~~v~~~~~~~~~~~~~r~d~IIavGGGsv 104 (358)
T PRK00002 32 KKVAIVTDETVAPLYLEKLRASLEA----A-GFE--VDVVVLPDGEQYKSLETLEKIYDALLEAGLDRSDTLIALGGGVI 104 (358)
T ss_pred CeEEEEECCchHHHHHHHHHHHHHh----c-CCc--eEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCCEEEEEcCcHH
Confidence 5788888777755555555555543 1 100 01112334445555444444433331 1 3499999999999
Q ss_pred chhHHHHHHHHhhCCCeEEeCCC
Q 017886 294 SNTSHLQEIAEDRGIPSYWIDSE 316 (364)
Q Consensus 294 SNT~rL~eia~~~~~~t~~Ie~~ 316 (364)
-.+.|.+...-..+.|-+.|-|-
T Consensus 105 ~D~aK~iA~~~~~gip~i~IPTT 127 (358)
T PRK00002 105 GDLAGFAAATYMRGIRFIQVPTT 127 (358)
T ss_pred HHHHHHHHHHhcCCCCEEEcCch
Confidence 99999887655678888888874
No 222
>cd01917 ACS_2 Acetyl-CoA synthase (ACS), also known as acetyl-CoA decarbonylase, is found in acetogenic and methanogenic organisms and is responsible for the synthesis and breakdown of acetyl-CoA. ACS forms a heterotetramer with carbon monoxide dehydrogenase (CODH) consisting of two ACS and two CODH subunits. CODH reduces carbon dioxide to carbon monoxide and ACS then synthesizes acetyl-CoA from carbon monoxide, CoA, and a methyl group donated by another protein (CoFeSP). ACS has three structural domains, an N-terminal rossman fold domain with a helical region at its N-terminus which interacts with CODH, and two alpha + beta fold domains. A Ni-Fe-S center referred to as the A-cluster is located in the C-terminal domain. A large cavity exists between the three domains which may bind CoA.
Probab=35.02 E-value=61 Score=32.31 Aligned_cols=39 Identities=10% Similarity=0.079 Sum_probs=32.8
Q ss_pred HHHHhcCCcEEecc----------CchhHHHHHHHHHHhhCCCeEEEEe
Q 017886 113 VTLNNKNVQIVDTT----------CPWVSKVWTSVEKHKKGDYTSIIHG 151 (364)
Q Consensus 113 ~~l~~~g~~iiDaT----------CP~V~kv~~~v~~~~~~Gy~iIIiG 151 (364)
-.+|+.|+.+||.| ||-.+.+.+++++|.++||-+++.|
T Consensus 113 ~iiR~~GvplV~G~IPGva~ivG~a~~~e~~~~I~~e~q~r~~lv~l~G 161 (287)
T cd01917 113 PIVRGLGIKMVDWTIPGEAVILGRAKDSKALKKIVDDLMGRGFMLFLCD 161 (287)
T ss_pred HHHHHcCCceecCCCCeEEEEEecCCChHHHHHHHHHHHHCCcEEEEec
Confidence 34567788888876 4577899999999999999999999
No 223
>cd06371 PBP1_sensory_GC_DEF_like Ligand-binding domain of membrane guanylyl cyclases (GC-D, GC-E, and GC-F) that are specifically expressed in sensory tissues. This group includes the ligand-binding domain of membrane guanylyl cyclases (GC-D, GC-E, and GC-F) that are specifically expressed in sensory tissues. They share a similar topology with an N-terminal extracellular ligand-binding domain, a single transmembrane domain, and a C-terminal cytosolic region that contains kinase-like and catalytic domains. GC-D is specifically expressed in a subpopulation of olfactory sensory neurons. GC-E and GC-F are colocalized within the same photoreceptor cells of the retina and have important roles in phototransduction. Unlike the other family members, GC-E and GC-F have no known extracellular ligands. Instead, they are activated under low calcium conditions by guanylyl cyclase activating proteins called GCAPs. GC-D expressing neurons have been implicated in pheromone detection and GC-D is phyloge
Probab=34.75 E-value=56 Score=32.63 Aligned_cols=52 Identities=10% Similarity=0.171 Sum_probs=37.5
Q ss_pred cccccccccHHHHHHHHHHHHhhhhCCCEEEEEcCCCCchhHHHHHHHHhhCCCeE
Q 017886 256 HFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSY 311 (364)
Q Consensus 256 ~~~v~nTIC~AT~~RQ~a~~eLa~~~vD~miVVGGknSSNT~rL~eia~~~~~~t~ 311 (364)
++.+.|+-|..+.. +..+...+-.+..|||+.+|+-+.-++.+|.+.+.|.+
T Consensus 43 ~~~~~d~~~~~~~a----~~~~~~~~~~V~aviGp~~S~~~~a~a~va~~~~iP~I 94 (382)
T cd06371 43 DYVLLPEPCETSRA----LAAFLGYEGYASAFVGPVNPGYCEAAALLAKEWDKALF 94 (382)
T ss_pred EEEEecCCCChhHH----HHHHHcccCCceEEECCCCchHHHHHHHHHHhcCceEE
Confidence 46678899986532 22222111257788999999999999999999988865
No 224
>PLN02564 6-phosphofructokinase
Probab=34.73 E-value=72 Score=34.05 Aligned_cols=53 Identities=13% Similarity=0.243 Sum_probs=40.6
Q ss_pred HHHHHHHHhhhhCCCEEEEEcCCCCchhH-HHHHHHHhhCCCeEEeCCCCccCC
Q 017886 269 ERQDAMYKMVEEKVDLILVVGGWNSSNTS-HLQEIAEDRGIPSYWIDSEKRIGP 321 (364)
Q Consensus 269 ~RQ~a~~eLa~~~vD~miVVGGknSSNT~-rL~eia~~~~~~t~~Ie~~~eL~~ 321 (364)
.+++++..|-+-.+|.++||||-.|-.+- +|++-+++.|.+.-.|-=++=||.
T Consensus 164 ~~~~iv~~L~~~~Id~LivIGGDGS~~gA~~L~e~~~~~g~~i~VIGIPKTIDN 217 (484)
T PLN02564 164 DTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEIRRRGLKVAVAGIPKTIDN 217 (484)
T ss_pred hHHHHHHHHHHhCCCEEEEECCchHHHHHHHHHHHHHHcCCCceEEEecccccC
Confidence 67788888866789999999999998665 888888888877444555555554
No 225
>cd06352 PBP1_NPR_GC_like Ligand-binding domain of membrane guanylyl-cyclase receptors. Ligand-binding domain of membrane guanylyl-cyclase receptors. Membrane guanylyl cyclases (GC) have a single membrane-spanning region and are activated by endogenous and exogenous peptides. This family can be divided into three major subfamilies: the natriuretic peptide receptors (NPRs), sensory organ-specific membrane GCs, and the enterotoxin/guanylin receptors. The binding of peptide ligands to the receptor results in the activation of the cytosolic catalytic domain. Three types of NPRs have been cloned from mammalian tissues: NPR-A/GC-A, NPR-B/ GC-B, and NPR-C. In addition, two of the GCs, GC-D and GC-G, appear to be pseudogenes in humans. Atrial natriuretic peptide (ANP) and brain natriuretic peptide (BNP) are produced in the heart, and both bind to the NPR-A. NPR-C, also termed the clearance receptor, binds each of the natriuretic peptides and can alter circulating levels of these peptides. The l
Probab=34.70 E-value=56 Score=32.06 Aligned_cols=63 Identities=16% Similarity=0.209 Sum_probs=46.1
Q ss_pred cccccccccHHHHHHHHHHHHhhhhCCCEEEEEcCCCCchhHHHHHHHHhhCCCeE-EeCCCCccC
Q 017886 256 HFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSY-WIDSEKRIG 320 (364)
Q Consensus 256 ~~~v~nTIC~AT~~RQ~a~~eLa~~~vD~miVVGGknSSNT~rL~eia~~~~~~t~-~Ie~~~eL~ 320 (364)
++.+.||=|......+.+.+-+.. -.+..|||+..|+-+.....++.+.+.|.. ..-+...+.
T Consensus 43 ~~~~~D~~~~~~~a~~~a~~l~~~--~~v~aiiG~~~s~~~~a~~~~~~~~~ip~Is~~~~~~~~~ 106 (389)
T cd06352 43 TFVYLDTECSESVALLAAVDLYWE--HNVDAFIGPGCPYACAPVARLAAHWNIPMISWGCVALSLS 106 (389)
T ss_pred EEEEecCCCchhhhHHHHHHHHhh--cCCcEEECCCChhHHHHHHHHHhcCCCCEecccccccccC
Confidence 567889999887777777666542 345678899999999999999998888764 233444443
No 226
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=34.54 E-value=75 Score=26.76 Aligned_cols=56 Identities=13% Similarity=0.151 Sum_probs=34.9
Q ss_pred eEEecccccCHHHHHHHHHcCcEEecCCccccccccccCCCEEEEcCCCCCHHHHHHHHhcCCcEEeccCchhH
Q 017886 58 IWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVS 131 (364)
Q Consensus 58 vy~lG~iIHN~~Vv~~L~~~Gv~~v~~~~~~~~~~~l~~g~~VIIrAHGv~~~v~~~l~~~g~~iiDaTCP~V~ 131 (364)
+.+.-+--|-+.+++++.++|+.. |++-+....++..+.+++.|++++---|+.|.
T Consensus 59 avv~~~~~~~~~~v~~~~~~g~~~------------------v~~~~g~~~~~~~~~a~~~gi~vigp~C~gv~ 114 (116)
T PF13380_consen 59 AVVCVPPDKVPEIVDEAAALGVKA------------------VWLQPGAESEELIEAAREAGIRVIGPNCLGVV 114 (116)
T ss_dssp EEE-S-HHHHHHHHHHHHHHT-SE------------------EEE-TTS--HHHHHHHHHTT-EEEESS-HHHH
T ss_pred EEEEcCHHHHHHHHHHHHHcCCCE------------------EEEEcchHHHHHHHHHHHcCCEEEeCCcceEE
Confidence 555666667777777777777433 33333378888999999999999988888664
No 227
>cd06334 PBP1_ABC_ligand_binding_like_1 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=34.41 E-value=48 Score=32.68 Aligned_cols=57 Identities=14% Similarity=0.153 Sum_probs=41.2
Q ss_pred ccccccccccHHHHHHHHHHHHhhhhCCCEEEEEcCCCCchhHHHHHHHHhhCCCeEEeC
Q 017886 255 EHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWID 314 (364)
Q Consensus 255 ~~~~v~nTIC~AT~~RQ~a~~eLa~~~vD~miVVGGknSSNT~rL~eia~~~~~~t~~Ie 314 (364)
-++.+.||-|+...-+ +++++|. .+ |-+.+|+|..|+.+..+..++.+.+.|.+...
T Consensus 41 ielv~~D~~~~p~~a~-~~a~~Li-~~-~~V~~i~~~~S~~~~a~~~~~~~~~vp~i~~~ 97 (351)
T cd06334 41 LEWEECDTGYEVPRGV-ECYERLK-GE-DGAVAFQGWSTGITEALIPKIAADKIPLMSGS 97 (351)
T ss_pred EEEEEecCCCCcHHHH-HHHHHHh-cc-CCcEEEecCcHHHHHHhhHHHhhcCCcEEecc
Confidence 3567888888765554 4677786 33 44445667889999999999999988866544
No 228
>cd06332 PBP1_aromatic_compounds_like Type I periplasmic binding proteins of active transport systems that are predicted to be involved in transport of aromatic compounds such as 2-nitrobenzoic acid and alkylbenzenes. This group includes the type I periplasmic binding proteins of active transport systems that are predicted to be involved in transport of aromatic compounds such as 2-nitrobenzoic acid and alkylbenzenes; their substrate specificities are not well characterized, however. Members also exhibit close similarity to active transport systems for short chain amides and/or urea found in bacteria and archaea.
Probab=34.30 E-value=72 Score=30.14 Aligned_cols=58 Identities=19% Similarity=0.130 Sum_probs=42.0
Q ss_pred cccccccccHHHHHHHHHHHHhhhh-CCCEEEEEcCCCCchhHHHHHHHHhhCCCeEEeCCC
Q 017886 256 HFISFNTICDATQERQDAMYKMVEE-KVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSE 316 (364)
Q Consensus 256 ~~~v~nTIC~AT~~RQ~a~~eLa~~-~vD~miVVGGknSSNT~rL~eia~~~~~~t~~Ie~~ 316 (364)
++.+.||=++....+ +++++|... .||+ |||+..|+.+..+.+.+++.+.|.....+.
T Consensus 40 ~l~~~d~~~~~~~~~-~~~~~l~~~~~v~~--iig~~~s~~~~~~~~~~~~~~ip~v~~~~~ 98 (333)
T cd06332 40 EVVVEDDELKPDVAV-QAARKLIEQDKVDV--VVGPVFSNVALAVVPSLTESGTFLISPNAG 98 (333)
T ss_pred EEEEecCCCCHHHHH-HHHHHHHHHcCCcE--EEcCCccHHHHHHHHHHhhcCCeEEecCCC
Confidence 567788888766555 466667633 5665 568877878888999998988887776544
No 229
>COG1832 Predicted CoA-binding protein [General function prediction only]
Probab=34.24 E-value=95 Score=27.87 Aligned_cols=67 Identities=24% Similarity=0.273 Sum_probs=47.8
Q ss_pred CceEEecccccCH-----HHHHHHHHcCcEEecCCcc-----------ccccccccCC-CEE-EEcCCCCCHHHHHHHHh
Q 017886 56 EKIWITNEIIHNP-----TVNKRLEEMAVQNIPVEEG-----------KKQFDVVNKG-DVV-VLPAFGAAVEEMVTLNN 117 (364)
Q Consensus 56 ~~vy~lG~iIHN~-----~Vv~~L~~~Gv~~v~~~~~-----------~~~~~~l~~g-~~V-IIrAHGv~~~v~~~l~~ 117 (364)
+.|.+.| +-+|| .|.+.|.++|-.++.-.++ ..+|.++|.. |+| |||.--.-|++.+++-+
T Consensus 17 K~IAvVG-~S~~P~r~sy~V~kyL~~~GY~ViPVNP~~~~~eiLG~k~y~sL~dIpe~IDiVdvFR~~e~~~~i~~eal~ 95 (140)
T COG1832 17 KTIAVVG-ASDKPDRPSYRVAKYLQQKGYRVIPVNPKLAGEEILGEKVYPSLADIPEPIDIVDVFRRSEAAPEVAREALE 95 (140)
T ss_pred ceEEEEe-cCCCCCccHHHHHHHHHHCCCEEEeeCcccchHHhcCchhhhcHHhCCCCCcEEEEecChhhhHHHHHHHHh
Confidence 4566666 45565 5889999999888764332 1367777753 454 89998888888888888
Q ss_pred cCCcEE
Q 017886 118 KNVQIV 123 (364)
Q Consensus 118 ~g~~ii 123 (364)
+|.+++
T Consensus 96 ~~~kv~ 101 (140)
T COG1832 96 KGAKVV 101 (140)
T ss_pred hCCCeE
Confidence 886665
No 230
>PTZ00468 phosphofructokinase family protein; Provisional
Probab=33.96 E-value=66 Score=38.24 Aligned_cols=53 Identities=19% Similarity=0.246 Sum_probs=35.9
Q ss_pred HHHHHHHHHhhhhCCCEEEEEcCCCCc-hhHHHHHHHHhhCCCeEEeCCCCccC
Q 017886 268 QERQDAMYKMVEEKVDLILVVGGWNSS-NTSHLQEIAEDRGIPSYWIDSEKRIG 320 (364)
Q Consensus 268 ~~RQ~a~~eLa~~~vD~miVVGGknSS-NT~rL~eia~~~~~~t~~Ie~~~eL~ 320 (364)
..++++++-|-+-..|.+|||||-.|. +..+|+|-+++.|.+.-.|.=+.=||
T Consensus 183 e~~~~~le~lkkl~Id~LVvIGGDgS~t~A~~LaEy~~~~g~~I~VIGIPKTID 236 (1328)
T PTZ00468 183 EQMRASLEICEKLKLHGLVVIGGDDSNTNAAVLAEYFKRNSSSTVVVGCPKTID 236 (1328)
T ss_pred HHHHHHHHHHHHhCCCEEEEECCchHHHHHHHHHHHHHhcCCCeeEEEEeEEEc
Confidence 345555555544579999999999987 55699998888874443344344444
No 231
>cd06341 PBP1_ABC_ligand_binding_like_7 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=33.88 E-value=2.4e+02 Score=26.96 Aligned_cols=58 Identities=21% Similarity=0.262 Sum_probs=38.7
Q ss_pred cccccccccHHHHHHHHHHHHhhhhCCCEEEEEcCCCCchhHHHHHHHHhhCCCeEEeCCC
Q 017886 256 HFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSE 316 (364)
Q Consensus 256 ~~~v~nTIC~AT~~RQ~a~~eLa~~~vD~miVVGGknSSNT~rL~eia~~~~~~t~~Ie~~ 316 (364)
++.+.||-+++...++. +++|... -.+..|||...|++...+ +++.+.+.|.+...+.
T Consensus 42 ~lv~~D~~~~~~~~~~~-~~~li~~-~~V~~iig~~~s~~~~~~-~~~~~~~ip~v~~~~~ 99 (341)
T cd06341 42 EYVWCDDQGDPASAAAC-ARDLVED-DKVVAVVGGSSGAGGSAL-PYLAGAGIPVIGGAGT 99 (341)
T ss_pred EEEEecCCCChhHHHHH-HHHHHHh-cCceEEEecccccchhHH-HHHhhcCCceecCCCC
Confidence 57788999988777654 5666633 234445666556655444 8888888888777654
No 232
>PRK15395 methyl-galactoside ABC transporter galactose-binding periplasmic protein MglB; Provisional
Probab=33.80 E-value=3e+02 Score=26.66 Aligned_cols=91 Identities=12% Similarity=0.179 Sum_probs=51.4
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHHH-HHHHhhhhCCCEEEEEcCCCCchh
Q 017886 218 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQD-AMYKMVEEKVDLILVVGGWNSSNT 296 (364)
Q Consensus 218 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ~-a~~eLa~~~vD~miVVGGknSSNT 296 (364)
..|+++... ++-.-|.++.+-+.+...+. + ...+.+.++ .....+|. .+..|.+..+|.+|+.+......
T Consensus 25 ~~Igvv~~~-~~~~f~~~~~~gi~~~a~~~-g----~~~~~~~~~--~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~- 95 (330)
T PRK15395 25 TRIGVTIYK-YDDNFMSVVRKAIEKDAKAA-P----DVQLLMNDS--QNDQSKQNDQIDVLLAKGVKALAINLVDPAAA- 95 (330)
T ss_pred ceEEEEEec-CcchHHHHHHHHHHHHHHhc-C----CeEEEEecC--CCCHHHHHHHHHHHHHcCCCEEEEeccCHHHH-
Confidence 478887754 34455677776666532221 1 112222221 12344553 45556546899999987543223
Q ss_pred HHHHHHHHhhCCCeEEeCCCC
Q 017886 297 SHLQEIAEDRGIPSYWIDSEK 317 (364)
Q Consensus 297 ~rL~eia~~~~~~t~~Ie~~~ 317 (364)
....+.+++.+.|...+++..
T Consensus 96 ~~~l~~l~~~giPvV~vd~~~ 116 (330)
T PRK15395 96 PTVIEKARGQDVPVVFFNKEP 116 (330)
T ss_pred HHHHHHHHHCCCcEEEEcCCc
Confidence 334455667889999998753
No 233
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=33.77 E-value=1.7e+02 Score=29.25 Aligned_cols=101 Identities=6% Similarity=0.006 Sum_probs=68.8
Q ss_pred cceEEEEeCCCCCcccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHHcCcEEecCCccccccccc------cC
Q 017886 23 GNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVV------NK 96 (364)
Q Consensus 23 ~~mkI~lA~~~GFC~GV~RAi~~a~~~~~~~~~~~vy~lG~iIHN~~Vv~~L~~~Gv~~v~~~~~~~~~~~l------~~ 96 (364)
..|-.+...|.-||.|+..||+.+.+.... ..+|-+=- .|.+.....-+.|+.+|.=.+ . +.+++ -+
T Consensus 167 sD~iLIkdNHi~~~g~i~~av~~~r~~~~~--~~kIeVEv---~tleea~~a~~agaDiImLDn-m-spe~l~~av~~~~ 239 (290)
T PRK06559 167 SDAIMLKDNHIAAVGSVQKAIAQARAYAPF--VKMVEVEV---ESLAAAEEAAAAGADIIMLDN-M-SLEQIEQAITLIA 239 (290)
T ss_pred cceEEEcHHHHHhhccHHHHHHHHHHhCCC--CCeEEEEC---CCHHHHHHHHHcCCCEEEECC-C-CHHHHHHHHHHhc
Confidence 357778889999998999999998776531 24565553 566666666677877765100 0 11111 13
Q ss_pred CCEEEEcCCCCCHHHHHHHHhcCCcEEeccCchh
Q 017886 97 GDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWV 130 (364)
Q Consensus 97 g~~VIIrAHGv~~~v~~~l~~~g~~iiDaTCP~V 130 (364)
+..++--|=|++++-.....+-|+.+|...+|+-
T Consensus 240 ~~~~leaSGGI~~~ni~~yA~tGVD~Is~galth 273 (290)
T PRK06559 240 GRSRIECSGNIDMTTISRFRGLAIDYVSSGSLTH 273 (290)
T ss_pred CceEEEEECCCCHHHHHHHHhcCCCEEEeCcccc
Confidence 4556777779999999888888999998888763
No 234
>TIGR03677 rpl7ae 50S ribosomal protein L7Ae. Multifunctional RNA-binding protein that recognizes the K-turn motif in ribosomal RNA, box H/ACA, box C/D and box C'/D' sRNAs. Interacts with protein L15e.
Probab=33.74 E-value=76 Score=27.11 Aligned_cols=41 Identities=20% Similarity=0.539 Sum_probs=31.5
Q ss_pred hCCCEEEEEcCCCCchh-HHHHHHHHhhCCCeEEeCCCCccC
Q 017886 280 EKVDLILVVGGWNSSNT-SHLQEIAEDRGIPSYWIDSEKRIG 320 (364)
Q Consensus 280 ~~vD~miVVGGknSSNT-~rL~eia~~~~~~t~~Ie~~~eL~ 320 (364)
+++-++|+-++-...++ .++-.+|+..+.|-+++.|-.||-
T Consensus 41 gka~LVilA~D~s~~~~~~~i~~lc~~~~Ip~~~~~sk~eLG 82 (117)
T TIGR03677 41 GIAKLVVIAEDVEPPEIVAHLPALCEEKGIPYVYVKKKEDLG 82 (117)
T ss_pred CCccEEEEeCCCCcHHHHHHHHHHHHHcCCCEEEeCCHHHHH
Confidence 45666666555555555 899999999999999999988885
No 235
>PF03575 Peptidase_S51: Peptidase family S51; InterPro: IPR005320 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S51 (clan PC(S)). The type example being dipeptidase E (alpha-aspartyl dipeptidase) from Escherichia coli. The family contains alpha-aspartyl dipeptidases (dipeptidase E) and cyanophycinases. The three-dimensional structure of Salmonella typhimurium aspartyl dipeptidase, peptidase E has been determine at 1.2-A resolution. The structure of this 25kDa enzyme consists of two mixed beta-sheets forming a V, flanked by six alpha-helices. The active site contains a Ser-His-Glu catalytic triad and is the first example of a serine peptidase/protease with a glutamate in the catalytic triad. The active site Ser is located on a strand-helix motif reminiscent of that found in alpha/beta-hydrolases, but the polypeptide fold and the organisation of the catalytic triad differ from those of the known serine proteases. This enzyme appears to represent a new example of convergent evolution of peptidase activity []. Alpha-aspartyl dipeptidase hydrolyses dipeptides containing N-terminal aspartate residues, asp-|-xaa. It does not act on peptides with N-terminal Glu, Asn or Gln, nor does it cleave isoaspartyl peptides. In the cyanobacteria, cyanophycinase is an exopeptidase that catalyses the hydrolytic cleavage of multi-l-arginyl-poly-l-aspartic acid (cyanophycin; a water- insoluble reserve polymer) into aspartate-arginine dipeptides.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3EN0_B 1FYE_A 1FY2_A 3L4E_A.
Probab=33.74 E-value=18 Score=31.66 Aligned_cols=63 Identities=24% Similarity=0.374 Sum_probs=37.0
Q ss_pred ccHHHHHHHHHHHHhhhhCCCEEEEEcCCCCchhHHHHHHHHhhCCCeEEeCCCCccCCCCcchhhhccchhhhhcccCC
Q 017886 263 ICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLP 342 (364)
Q Consensus 263 IC~AT~~RQ~a~~eLa~~~vD~miVVGGknSSNT~rL~eia~~~~~~t~~Ie~~~eL~~~~~~~~~~~~~~~~~~~~wl~ 342 (364)
++..+.+.++....|. .+|++++-|| ||.+|+..=++.+. +. .++ +.+.
T Consensus 19 l~~~~~~~~~~~~~i~--~ad~I~~~GG----~~~~l~~~l~~t~l-----------~~--~i~------------~~~~ 67 (154)
T PF03575_consen 19 LDLSDRNDADILEAIR--EADAIFLGGG----DTFRLLRQLKETGL-----------DE--AIR------------EAYR 67 (154)
T ss_dssp CCCTSCGHHHHHHHHH--HSSEEEE--S-----HHHHHHHHHHTTH-----------HH--HHH------------HHHH
T ss_pred EeccCCChHHHHHHHH--hCCEEEECCC----CHHHHHHHHHhCCH-----------HH--HHH------------HHHH
Confidence 3434434445555553 6999999997 88898888877641 11 111 2222
Q ss_pred CCCCEEEEEeCCCC
Q 017886 343 KGQITIGITSGAST 356 (364)
Q Consensus 343 ~~~~~VGITAGAST 356 (364)
+|...+|.+|||..
T Consensus 68 ~G~vi~G~SAGA~i 81 (154)
T PF03575_consen 68 KGGVIIGTSAGAMI 81 (154)
T ss_dssp TTSEEEEETHHHHC
T ss_pred CCCEEEEEChHHhh
Confidence 56788999999843
No 236
>TIGR02483 PFK_mixed phosphofructokinase. Members of this family that are characterized, save one, are phosphofructokinases dependent on pyrophosphate (EC 2.7.1.90) rather than ATP (EC 2.7.1.11). The exception is one of three phosphofructokinases from Streptomyces coelicolor. Family members are both bacterial and archaeal.
Probab=33.70 E-value=76 Score=31.88 Aligned_cols=44 Identities=18% Similarity=0.369 Sum_probs=33.2
Q ss_pred HHHHHHHHHhhhhCCCEEEEEcCCCCchhHHHHHHHHhhCCCeEEeC
Q 017886 268 QERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWID 314 (364)
Q Consensus 268 ~~RQ~a~~eLa~~~vD~miVVGGknSSNT~rL~eia~~~~~~t~~Ie 314 (364)
..|+++++.|-+-.+|.+|||||-.|-.+-+. ++ +.+.+...|-
T Consensus 81 ~~~~~~~~~l~~~~Id~LivIGGdgS~~~a~~--L~-~~gi~vigiP 124 (324)
T TIGR02483 81 DGDDKIVANLKELGLDALIAIGGDGTLGIARR--LA-DKGLPVVGVP 124 (324)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCchHHHHHHH--HH-hcCCCEEeec
Confidence 57888888886678999999999999876642 22 2567777664
No 237
>cd02201 FtsZ_type1 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=33.60 E-value=1.1e+02 Score=29.98 Aligned_cols=44 Identities=16% Similarity=0.382 Sum_probs=34.8
Q ss_pred HHHHHHhhhhCCCEEEEE----cCCCCchhHHHHHHHHhhCCCeEEeCC
Q 017886 271 QDAMYKMVEEKVDLILVV----GGWNSSNTSHLQEIAEDRGIPSYWIDS 315 (364)
Q Consensus 271 Q~a~~eLa~~~vD~miVV----GGknSSNT~rL~eia~~~~~~t~~Ie~ 315 (364)
++.++++. ..+|.++|+ ||..|.=+..+++++++.+..+|-|-+
T Consensus 75 ~~~I~~~l-~~~d~v~i~aglGGGTGSG~ap~ia~~a~e~g~~~~~vvt 122 (304)
T cd02201 75 REEIKEAL-EGADMVFITAGMGGGTGTGAAPVIAKIAKEMGALTVAVVT 122 (304)
T ss_pred HHHHHHHH-hCCCEEEEeeccCCCcchhHHHHHHHHHHHcCCCEEEEEe
Confidence 34567777 579999998 457787788899999999988877654
No 238
>cd06280 PBP1_LacI_like_4 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=33.42 E-value=3.4e+02 Score=24.64 Aligned_cols=85 Identities=20% Similarity=0.180 Sum_probs=44.9
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHH-HHHHHhhhhCCCEEEEEcCCCCchhHH
Q 017886 220 VGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSNTSH 298 (364)
Q Consensus 220 v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ-~a~~eLa~~~vD~miVVGGknSSNT~r 298 (364)
|+++... ++-.-|..+.+.+.+...+. + -.+.++++ .+. .+.| +.+..|.+.++|.+|+.+-..+..
T Consensus 2 Ig~i~p~-~~~~~~~~~~~~i~~~~~~~-g-----~~~~~~~~-~~~-~~~~~~~i~~l~~~~~dgiii~~~~~~~~--- 69 (263)
T cd06280 2 VGLIVAD-IRNPFFTAVSRAVEDAAYRA-G-----LRVILCNT-DED-PEKEAMYLELMEEERVTGVIFAPTRATLR--- 69 (263)
T ss_pred EEEEecc-cccccHHHHHHHHHHHHHHC-C-----CEEEEEeC-CCC-HHHHHHHHHHHHhCCCCEEEEeCCCCCch---
Confidence 3455433 33445666776666532222 2 22333221 112 2334 344556556799999987543332
Q ss_pred HHHHHHhhCCCeEEeCCCC
Q 017886 299 LQEIAEDRGIPSYWIDSEK 317 (364)
Q Consensus 299 L~eia~~~~~~t~~Ie~~~ 317 (364)
+.+. ...+.|..++++..
T Consensus 70 ~~~~-~~~~iPvV~~~~~~ 87 (263)
T cd06280 70 RLAE-LRLSFPVVLIDRAG 87 (263)
T ss_pred HHHH-HhcCCCEEEECCCC
Confidence 2233 35678999998754
No 239
>cd02518 GT2_SpsF SpsF is a glycosyltrnasferase implicated in the synthesis of the spore coat. Spore coat polysaccharide biosynthesis protein F (spsF) is a glycosyltransferase implicated in the synthesis of the spore coat in a variety of bacteria challenged by stress as starvation. The spsF gene is expressed in the late stage of coat development responsible for a terminal step in coat formation that involves the glycosylation of the coat. SpsF gene mutation resulted in spores that appeared normal. But, the spores tended to aggregate and had abnormal adsorption properties, indicating a surface alteration.
Probab=33.19 E-value=1.2e+02 Score=27.91 Aligned_cols=43 Identities=9% Similarity=0.079 Sum_probs=31.1
Q ss_pred cCCcEEeccCchhH--HHHHHHHHHhhCCCeEEEE-ecCCCceeee
Q 017886 118 KNVQIVDTTCPWVS--KVWTSVEKHKKGDYTSIIH-GKYSHEETVA 160 (364)
Q Consensus 118 ~g~~iiDaTCP~V~--kv~~~v~~~~~~Gy~iIIi-G~~~HpEv~g 160 (364)
.++-++++.+||+. -+.+.+..+...++.+++. |.++||-..|
T Consensus 89 d~vli~~~D~P~i~~~~i~~li~~~~~~~~~~~~~~~~~g~Pv~~~ 134 (233)
T cd02518 89 DVVVRITGDCPLIDPEIIDAVIRLFLKSGADYTSNTLPRTYPDGLD 134 (233)
T ss_pred CEEEEeCCCCCCCCHHHHHHHHHHHHhCCCCEEecCCCCCCCCceE
Confidence 46788999999997 4566776666667766664 4568888555
No 240
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=33.03 E-value=86 Score=31.06 Aligned_cols=49 Identities=16% Similarity=0.211 Sum_probs=37.2
Q ss_pred CCEEEEcCCCCCHHHHHHHHhcCCcEEeccCchhHHHHHHHHHHhhCCCeEEEE
Q 017886 97 GDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIH 150 (364)
Q Consensus 97 g~~VIIrAHGv~~~v~~~l~~~g~~iiDaTCP~V~kv~~~v~~~~~~Gy~iIIi 150 (364)
+-.+|.-++|.|.+..+.+++.|+.|+ ++|+-+. .++++.+.|-..|++
T Consensus 87 ~v~~v~~~~g~p~~~i~~lk~~g~~v~-~~v~s~~----~a~~a~~~GaD~Ivv 135 (307)
T TIGR03151 87 KVPVVTTGAGNPGKYIPRLKENGVKVI-PVVASVA----LAKRMEKAGADAVIA 135 (307)
T ss_pred CCCEEEEcCCCcHHHHHHHHHcCCEEE-EEcCCHH----HHHHHHHcCCCEEEE
Confidence 444555578999899999999999988 5666664 456666778888776
No 241
>PTZ00408 NAD-dependent deacetylase; Provisional
Probab=32.81 E-value=86 Score=30.11 Aligned_cols=58 Identities=19% Similarity=0.256 Sum_probs=38.0
Q ss_pred ccccccccccHHHHHHHHHHHHhhhhCCCEEEEEcCCCCch-hHHHHHHHHhhCCCeEEeCCCC
Q 017886 255 EHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSN-TSHLQEIAEDRGIPSYWIDSEK 317 (364)
Q Consensus 255 ~~~~v~nTIC~AT~~RQ~a~~eLa~~~vD~miVVGGknSSN-T~rL~eia~~~~~~t~~Ie~~~ 317 (364)
+++..|+.. . ...+++.+.+ .++|++||||-.-+-. ...|...|++.|.+...|.--.
T Consensus 151 P~vV~FGE~--~--~~~~~~~~~~-~~~DlllviGTSl~V~pa~~l~~~a~~~g~~vi~IN~~~ 209 (242)
T PTZ00408 151 PHIVWFGEM--P--LYMDEIESVM-SKTDLFVAVGTSGNVYPAAGFVGRAQFYGATTLELNLEE 209 (242)
T ss_pred CCEEEcCCC--C--CcHHHHHHHH-HhCCEEEEEccCCccccHHHHHHHHHHcCCeEEEECCCC
Confidence 455666662 1 1223344445 5799999999854433 3478889999999888887543
No 242
>cd06358 PBP1_NHase Type I periplasmic-binding protein of the nitrile hydratase (NHase) system that selectively converts nitriles to corresponding amides. This group includes the type I periplasmic-binding protein of the nitrile hydratase (NHase) system that selectively converts nitriles to corresponding amides, which are subsequently converted by amidases to yield free carboxylic acids and ammonia. NHases from bacteria and fungi have been purified and characterized. In Rhodococcus sp., the nitrile hydratase operon consists of six genes encoding NHase regulator 2, NHase regulator 1, amidase, NHase alpha subunit, NHase beta subunit, and NHase activator. The operon produces a constitutive hydratase that has a broad substrate spectrum: aliphatic and aromatic nitriles, mononitriles and dinitriles, hydroxynitriles and amino-nitriles, and a constitutive amidase of equally low substrate specificity. NHases are metalloenzymes containing either cobalt or iron, and therefore can be classified int
Probab=32.80 E-value=52 Score=31.67 Aligned_cols=56 Identities=9% Similarity=0.178 Sum_probs=42.3
Q ss_pred ccccccccccHHHHHHHHHHHHhhhhCCCEEEEEcCCCCchhHHHHHHHHhhCCCeEEe
Q 017886 255 EHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWI 313 (364)
Q Consensus 255 ~~~~v~nTIC~AT~~RQ~a~~eLa~~~vD~miVVGGknSSNT~rL~eia~~~~~~t~~I 313 (364)
-++.+.||-|....-. +++++|. .+-++..|||+..|..+..+..++. .+.|....
T Consensus 41 i~l~~~D~~~~p~~a~-~~a~~Li-~~~~v~aviG~~~s~~a~a~~~~~~-~~vp~i~~ 96 (333)
T cd06358 41 VELVIVDDGSPPAEAA-AAAARLV-DEGGVDAIIGWHTSAVRNAVAPVVA-GRVPYVYT 96 (333)
T ss_pred EEEEEECCCCChHHHH-HHHHHHH-HhCCCcEEEecCcHHHHHHHHHHHh-cCceEEeC
Confidence 3567889999876655 5668887 4557888899999999999999997 66665443
No 243
>PRK10329 glutaredoxin-like protein; Provisional
Probab=32.62 E-value=2.1e+02 Score=22.49 Aligned_cols=71 Identities=17% Similarity=0.223 Sum_probs=48.6
Q ss_pred eEEEEeCCCCCcccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHHcCcEEecCCccccccccccCCCEEEEcC
Q 017886 25 VKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPA 104 (364)
Q Consensus 25 mkI~lA~~~GFC~GV~RAi~~a~~~~~~~~~~~vy~lG~iIHN~~Vv~~L~~~Gv~~v~~~~~~~~~~~l~~g~~VIIrA 104 (364)
++++-....+||..+++.++. . +-=|..=++=.+|...+.|+..|...+.- +--|+..+.
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~~-------~--gI~~~~idi~~~~~~~~~~~~~g~~~vPv---------v~i~~~~~~-- 62 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAMES-------R--GFDFEMINVDRVPEAAETLRAQGFRQLPV---------VIAGDLSWS-- 62 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHHH-------C--CCceEEEECCCCHHHHHHHHHcCCCCcCE---------EEECCEEEe--
Confidence 567777899999999888742 1 23466667778898888898877655531 112444433
Q ss_pred CCCCHHHHHHHH
Q 017886 105 FGAAVEEMVTLN 116 (364)
Q Consensus 105 HGv~~~v~~~l~ 116 (364)
|-.++.+++|.
T Consensus 63 -Gf~~~~l~~~~ 73 (81)
T PRK10329 63 -GFRPDMINRLH 73 (81)
T ss_pred -cCCHHHHHHHH
Confidence 88888888775
No 244
>cd06284 PBP1_LacI_like_6 Ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group includes the ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors and are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=32.62 E-value=3.4e+02 Score=24.39 Aligned_cols=84 Identities=15% Similarity=0.039 Sum_probs=44.6
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHHHHH-HHhhhhCCCEEEEEcCCCCchhHH
Q 017886 220 VGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAM-YKMVEEKVDLILVVGGWNSSNTSH 298 (364)
Q Consensus 220 v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ~a~-~eLa~~~vD~miVVGGknSSNT~r 298 (364)
|+++.++ ++-.-|..+.+.+++...+. + -.+.+.++- + ....|.++ ..+.+.++|.+|+.++.. .++
T Consensus 2 i~~v~~~-~~~~~~~~~~~~i~~~~~~~-g-----~~~~~~~~~-~-~~~~~~~~~~~~~~~~vdgiii~~~~~-~~~-- 69 (267)
T cd06284 2 ILVLVPD-IANPFFSEILKGIEDEAREA-G-----YGVLLGDTR-S-DPEREQEYLDLLRRKQADGIILLDGSL-PPT-- 69 (267)
T ss_pred EEEEECC-CCCccHHHHHHHHHHHHHHc-C-----CeEEEecCC-C-ChHHHHHHHHHHHHcCCCEEEEecCCC-CHH--
Confidence 4555554 44566777777776643332 1 223333321 1 23345444 344346799999977542 222
Q ss_pred HHHHHHhhCCCeEEeCCC
Q 017886 299 LQEIAEDRGIPSYWIDSE 316 (364)
Q Consensus 299 L~eia~~~~~~t~~Ie~~ 316 (364)
+.+.. ..|.|...+.+.
T Consensus 70 ~~~~~-~~~ipvv~~~~~ 86 (267)
T cd06284 70 ALTAL-AKLPPIVQACEY 86 (267)
T ss_pred HHHHH-hcCCCEEEEecc
Confidence 32333 458898888653
No 245
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=32.60 E-value=2.2e+02 Score=29.90 Aligned_cols=51 Identities=10% Similarity=-0.002 Sum_probs=32.9
Q ss_pred eEEEEeCCCCCcccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHHcCcEEe
Q 017886 25 VKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNI 82 (364)
Q Consensus 25 mkI~lA~~~GFC~GV~RAi~~a~~~~~~~~~~~vy~lG~iIHN~~Vv~~L~~~Gv~~v 82 (364)
+++.+..+..||..|.+|.+.. ...++.=..-+. +.-|+|+..+++ ++..|
T Consensus 120 i~~fv~~~Cp~Cp~~v~~~~~~---a~~~~~i~~~~i-d~~~~~~~~~~~---~v~~V 170 (517)
T PRK15317 120 FETYVSLSCHNCPDVVQALNLM---AVLNPNITHTMI-DGALFQDEVEAR---NIMAV 170 (517)
T ss_pred EEEEEcCCCCCcHHHHHHHHHH---HHhCCCceEEEE-EchhCHhHHHhc---CCccc
Confidence 7889999999999877776543 333332223333 677888777655 55444
No 246
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=32.53 E-value=2.3e+02 Score=27.55 Aligned_cols=138 Identities=9% Similarity=0.040 Sum_probs=68.6
Q ss_pred HHHHHHHhhCCCeEEEEecCCCceeeeecccCCcEEEEcChh-hHHHhhhhhcCCCCCCCCChHHHHHHHHHhhhcCCCC
Q 017886 134 WTSVEKHKKGDYTSIIHGKYSHEETVATASFAGKYIIVKNMK-EAEYVCDYILGGELNGSSSTKEAFLEKFKKAVSKGFD 212 (364)
Q Consensus 134 ~~~v~~~~~~Gy~iIIiG~~~HpEv~gi~g~~~~~~vv~~~~-e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (364)
+..++.+.+.||.|.+++...-+........ .+.+++.-+. .++. .++++... ..+
T Consensus 17 ~~lA~~l~~~G~~V~~~~r~~~~~~~~~~~~-advvi~~vp~~~~~~-------------------v~~~l~~~---~~~ 73 (308)
T PRK14619 17 STLAGLASANGHRVRVWSRRSGLSLAAVLAD-ADVIVSAVSMKGVRP-------------------VAEQVQAL---NLP 73 (308)
T ss_pred HHHHHHHHHCCCEEEEEeCCCCCCHHHHHhc-CCEEEEECChHHHHH-------------------HHHHHHHh---cCC
Confidence 4567888899999998886543332222211 1344443332 2322 23333210 011
Q ss_pred CCCCCceEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHHHHHHHhhhhCCCEEEEEcCCC
Q 017886 213 PDVDLVKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWN 292 (364)
Q Consensus 213 ~~~~~~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ~a~~eLa~~~vD~miVVGGkn 292 (364)
+ ..+.+-+.+.+..+....+.+.+..+ +. + ..+..+..-+ .+.+++ .......+++|.+
T Consensus 74 ~----~~ivi~~s~gi~~~~~~~~s~~~~~~----~~-~---~~v~~i~gp~--------~a~ei~-~~~~~~~~~ag~~ 132 (308)
T PRK14619 74 P----ETIIVTATKGLDPETTRTPSQIWQAA----FP-N---HPVVVLSGPN--------LSKEIQ-QGLPAATVVASRD 132 (308)
T ss_pred C----CcEEEEeCCcccCCCCcCHHHHHHHH----cC-C---CceEEEECCC--------cHHHHh-cCCCeEEEEEeCC
Confidence 1 24444444447666555555555432 21 1 1111111111 455565 3455566677777
Q ss_pred CchhHHHHHHHHhhCCCeEEeCC
Q 017886 293 SSNTSHLQEIAEDRGIPSYWIDS 315 (364)
Q Consensus 293 SSNT~rL~eia~~~~~~t~~Ie~ 315 (364)
-....++.++....+.++|+.++
T Consensus 133 ~~~~~~v~~ll~~~~~~~~~~~d 155 (308)
T PRK14619 133 LAAAETVQQIFSSERFRVYTNSD 155 (308)
T ss_pred HHHHHHHHHHhCCCcEEEEecCC
Confidence 77788888888766656664333
No 247
>PF00465 Fe-ADH: Iron-containing alcohol dehydrogenase ; InterPro: IPR001670 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of ethanol to acetaldehyde with the concomitant reduction of NAD. Currently three, structurally and catalytically, different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Iron-containing ADH's have been found in yeast (gene ADH4) [], as well as in Zymomonas mobilis (gene adhB) []. These two iron-containing ADH's are closely related to the following enzymes: Escherichia coli propanediol oxidoreductase (1.1.1.77 from EC) (gene fucO) [], an enzyme involved in the metabolism of fucose and which also seems to contain ferrous ion(s). Clostridium acetobutylicum NADPH- and NADH-dependent butanol dehydrogenases (1.1.1 from EC) (genes adh1, bdhA and bdhB) [], an enzyme which has activity using butanol and ethanol as substrates. E. coli adhE [], an iron-dependent enzyme which harbor three different activities: alcohol dehydrogenase, acetaldehyde dehydrogenase (acetylating) (1.2.1.10 from EC) and pyruvate-formate-lyase deactivase. Bacterial glycerol dehydrogenase (1.1.1.6 from EC) (gene gldA or dhaD) []. Clostridium kluyveri NAD-dependent 4-hydroxybutyrate dehydrogenase (4hbd) (1.1.1.61 from EC). Citrobacter freundii and Klebsiella pneumoniae 1,3-propanediol dehydrogenase (1.1.1.202 from EC) (gene dhaT). Bacillus methanolicus NAD-dependent methanol dehydrogenase (1.1.1.244 from EC) []. E. coli and Salmonella typhimurium ethanolamine utilization protein eutG. E. coli hypothetical protein yiaY. ; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1RRM_A 2BL4_A 2BI4_A 3BFJ_R 1KQ3_A 1JQ5_A 1JPU_A 1JQA_A 3JZD_A 3UHJ_A ....
Probab=32.52 E-value=1.3e+02 Score=30.04 Aligned_cols=78 Identities=14% Similarity=0.167 Sum_probs=45.5
Q ss_pred eEEEEEcCCCChH-HHHHHHHHHHHHHhhhcccccccccccccc-cccHHHHHHHHHHHHhh-hhCCCEEEEEcCCCCch
Q 017886 219 KVGIANQTTMLKG-ETEEIGKLVEKTMMRKFGVENVNEHFISFN-TICDATQERQDAMYKMV-EEKVDLILVVGGWNSSN 295 (364)
Q Consensus 219 kv~vvsQTT~~~~-~~~~i~~~l~~~~~~~~~~~~~~~~~~v~n-TIC~AT~~RQ~a~~eLa-~~~vD~miVVGGknSSN 295 (364)
|+.+|+-..+... -++.+.+.|++ . ..++.+|+ .--++|..-=+++.+++ ...+|++|-|||-..-.
T Consensus 23 r~lvVt~~~~~~~~~~~~v~~~L~~----~------~i~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGS~~D 92 (366)
T PF00465_consen 23 RVLVVTDPSLSKSGLVDRVLDALEE----A------GIEVQVFDGVGPNPTLEDVDEAAEQARKFGADCIIAIGGGSVMD 92 (366)
T ss_dssp EEEEEEEHHHHHHTHHHHHHHHHHH----T------TCEEEEEEEESSS-BHHHHHHHHHHHHHTTSSEEEEEESHHHHH
T ss_pred CEEEEECchHHhCccHHHHHHHHhh----C------ceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCc
Confidence 6777765544433 45666666643 1 12333333 22223322222333333 35799999999999999
Q ss_pred hHHHHHHHHhh
Q 017886 296 TSHLQEIAEDR 306 (364)
Q Consensus 296 T~rL~eia~~~ 306 (364)
+-|.+.+....
T Consensus 93 ~aK~va~~~~~ 103 (366)
T PF00465_consen 93 AAKAVALLLAN 103 (366)
T ss_dssp HHHHHHHHHTS
T ss_pred HHHHHHhhccC
Confidence 99998888664
No 248
>PRK00481 NAD-dependent deacetylase; Provisional
Probab=32.40 E-value=88 Score=29.65 Aligned_cols=44 Identities=23% Similarity=0.252 Sum_probs=29.9
Q ss_pred HHHHHHhhhhCCCEEEEEcCCCC-chhHHHHHHHHhhCCCeEEeCCC
Q 017886 271 QDAMYKMVEEKVDLILVVGGWNS-SNTSHLQEIAEDRGIPSYWIDSE 316 (364)
Q Consensus 271 Q~a~~eLa~~~vD~miVVGGknS-SNT~rL~eia~~~~~~t~~Ie~~ 316 (364)
+.+...+. ++|++||||-.-. .-..+|.+.++..|.+...|.-.
T Consensus 169 ~~a~~~~~--~~dl~lviGTsl~V~p~~~l~~~~~~~~~~~i~iN~~ 213 (242)
T PRK00481 169 DEAYEALE--EADLFIVIGTSLVVYPAAGLPYEAREHGAKTVEINLE 213 (242)
T ss_pred HHHHHHHh--cCCEEEEECCCceEcCHhHHHHHHHHCCCeEEEECCC
Confidence 34444553 6899999993322 24568888888888887766543
No 249
>cd06269 PBP1_glutamate_receptors_like Family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases such as the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domain of the ionotropic glutamate receptors. This CD represents the ligand-binding domain of the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases such as the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domain of the ionotropic glutamate receptors, all of which are structurally similar and related to the periplasmic-binding fold type I family. The family C GPCRs consist of metabotropic glutamate receptor (mGluR) receptors, a calcium-sensing receptor (CaSR), gamma-aminobutyric receptors (GABAb), the promiscuous L-alpha-amino acid receptor GPR6A, families of taste and pheromone receptors, and orphan receptors. Truncated splicing va
Probab=32.39 E-value=1.1e+02 Score=27.57 Aligned_cols=60 Identities=13% Similarity=0.261 Sum_probs=43.2
Q ss_pred cccccccccHHHHHHHHHHHHhhhh---CCCEEEEEcCCCCchhHHHHHHHHhhCCCeEEeCCC
Q 017886 256 HFISFNTICDATQERQDAMYKMVEE---KVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSE 316 (364)
Q Consensus 256 ~~~v~nTIC~AT~~RQ~a~~eLa~~---~vD~miVVGGknSSNT~rL~eia~~~~~~t~~Ie~~ 316 (364)
++.+.|+-|... .=..++.+++.. ...+..|+|...|+.+.-+..+|...+.|.+-....
T Consensus 42 ~~~~~d~~~~~~-~~~~~~~~~~~~~~~~~~v~aiiG~~~s~~~~~v~~~~~~~~iP~is~~~~ 104 (298)
T cd06269 42 GYEIYDSCCSPS-DAFSAALDLCSLLEKSRGVVAVIGPSSSSSAEAVASLLGALHIPQISYSAT 104 (298)
T ss_pred eeEEEecCCChH-HHHHHHHHHHhcCCCCCceEEEECCCCchHHHHHHHHhccCCCcEEecccC
Confidence 455677777444 334555666632 258999999999999999999999999888655443
No 250
>COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only]
Probab=32.31 E-value=56 Score=32.61 Aligned_cols=87 Identities=20% Similarity=0.252 Sum_probs=49.2
Q ss_pred ccHHHHHHHHHHHHhhCCCCceEEecc--cccCHHHHHHHHHcCcEEecCCccccccccccCCCE-EEEcCCC-CC----
Q 017886 37 WGVERAVQIAYEARKQFPEEKIWITNE--IIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDV-VVLPAFG-AA---- 108 (364)
Q Consensus 37 ~GV~RAi~~a~~~~~~~~~~~vy~lG~--iIHN~~Vv~~L~~~Gv~~v~~~~~~~~~~~l~~g~~-VIIrAHG-v~---- 108 (364)
.|-+.||+-|+. ++ .|..--| =+-.+.-.++++..||.++++ +.+....|.+ |+|..+| .+
T Consensus 32 GGa~mAiefAeA-----GH-DVVLaePn~d~~dd~~w~~vedAGV~vv~d-----D~eaa~~~Ei~VLFTPFGk~T~~Ia 100 (340)
T COG4007 32 GGARMAIEFAEA-----GH-DVVLAEPNRDIMDDEHWKRVEDAGVEVVSD-----DAEAAEHGEIHVLFTPFGKATFGIA 100 (340)
T ss_pred CchHHHHHHHHc-----CC-cEEeecCCccccCHHHHHHHHhcCcEEecC-----chhhhhcceEEEEecccchhhHHHH
Confidence 467777777643 11 1211111 145677789999999999986 3344445554 7899999 44
Q ss_pred HHHHHHHHhcCCcEEeccCchhHHHH
Q 017886 109 VEEMVTLNNKNVQIVDTTCPWVSKVW 134 (364)
Q Consensus 109 ~~v~~~l~~~g~~iiDaTCP~V~kv~ 134 (364)
++..+-+.+.-+..=-+|||-|.--+
T Consensus 101 rei~~hvpEgAVicnTCT~sp~vLy~ 126 (340)
T COG4007 101 REILEHVPEGAVICNTCTVSPVVLYY 126 (340)
T ss_pred HHHHhhCcCCcEecccccCchhHHHH
Confidence 44444444432222335555544333
No 251
>cd08189 Fe-ADH5 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=32.24 E-value=2.5e+02 Score=28.26 Aligned_cols=78 Identities=21% Similarity=0.231 Sum_probs=46.0
Q ss_pred ceEEEEEcCCCChH-HHHHHHHHHHHHHhhhcccccccccccccccc-cHHHHHHHHHHHHhh-hhCCCEEEEEcCCCCc
Q 017886 218 VKVGIANQTTMLKG-ETEEIGKLVEKTMMRKFGVENVNEHFISFNTI-CDATQERQDAMYKMV-EEKVDLILVVGGWNSS 294 (364)
Q Consensus 218 ~kv~vvsQTT~~~~-~~~~i~~~l~~~~~~~~~~~~~~~~~~v~nTI-C~AT~~RQ~a~~eLa-~~~vD~miVVGGknSS 294 (364)
+++.+|....+... -++++.+.|++ . +.++.+|+.+ -+.|.+-=+.+.+++ ..++|++|-|||=.+-
T Consensus 27 ~~~lvvt~~~~~~~g~~~~v~~~L~~----~------g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~d~IIaiGGGS~~ 96 (374)
T cd08189 27 KKVLIVTDKGLVKLGLLDKVLEALEG----A------GIEYAVYDGVPPDPTIENVEAGLALYRENGCDAILAVGGGSVI 96 (374)
T ss_pred CeEEEEeCcchhhcccHHHHHHHHHh----c------CCeEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCccHH
Confidence 58888876654332 35666666653 1 1234445544 123322222222222 3579999999999999
Q ss_pred hhHHHHHHHHh
Q 017886 295 NTSHLQEIAED 305 (364)
Q Consensus 295 NT~rL~eia~~ 305 (364)
.+-|..-+.-.
T Consensus 97 D~aK~ia~~~~ 107 (374)
T cd08189 97 DCAKAIAARAA 107 (374)
T ss_pred HHHHHHHHHHh
Confidence 99998766544
No 252
>TIGR02482 PFKA_ATP 6-phosphofructokinase. 6-phosphofructokinase (EC 2.7.1.11) catalyzes the addition of phosphate from ATP to fructose 6-phosphate to give fructose 1,6-bisphosphate. This represents a key control step in glycolysis. This model hits bacterial ATP-dependent 6-phosphofructokinases which lack a beta-hairpin loop present in TIGR02483 family members. TIGR02483 contains members that are ATP-dependent as well as members that are pyrophosphate-dependent. TIGR02477 represents the pyrophosphate-dependent phosphofructokinase, diphosphate--fructose-6-phosphate 1-phosphotransferase (EC 2.7.1.90).
Probab=32.04 E-value=83 Score=31.31 Aligned_cols=43 Identities=28% Similarity=0.424 Sum_probs=31.4
Q ss_pred HHHHHHHHHhhhhCCCEEEEEcCCCCchhH-HHHHHHHhhCCCeEEe
Q 017886 268 QERQDAMYKMVEEKVDLILVVGGWNSSNTS-HLQEIAEDRGIPSYWI 313 (364)
Q Consensus 268 ~~RQ~a~~eLa~~~vD~miVVGGknSSNT~-rL~eia~~~~~~t~~I 313 (364)
..++++++.|-+..+|.+|+|||-.|-.+- +|+ +..+.+...|
T Consensus 78 ~~~~~~~~~l~~~~Id~Li~IGGdgs~~~a~~L~---e~~~i~vigi 121 (301)
T TIGR02482 78 EGRQKAVENLKKLGIEGLVVIGGDGSYTGAQKLY---EEGGIPVIGL 121 (301)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHH---HhhCCCEEee
Confidence 467778888866789999999999887665 443 3356666655
No 253
>cd00858 GlyRS_anticodon GlyRS Glycyl-anticodon binding domain. GlyRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=31.93 E-value=72 Score=26.75 Aligned_cols=42 Identities=7% Similarity=0.014 Sum_probs=30.8
Q ss_pred HHHHHHHHhcCCcE-EeccCchhHHHHHHHHHHhhCCCe-EEEEecCC
Q 017886 109 VEEMVTLNNKNVQI-VDTTCPWVSKVWTSVEKHKKGDYT-SIIHGKYS 154 (364)
Q Consensus 109 ~~v~~~l~~~g~~i-iDaTCP~V~kv~~~v~~~~~~Gy~-iIIiG~~~ 154 (364)
-++.+.|++.|+.+ +|-. +++.+..+...+.|+. ++|+|+..
T Consensus 45 ~~la~~LR~~gi~v~~d~~----~sl~kqlk~A~k~g~~~~iiiG~~e 88 (121)
T cd00858 45 KEISEELRELGFSVKYDDS----GSIGRRYARQDEIGTPFCVTVDFDT 88 (121)
T ss_pred HHHHHHHHHCCCEEEEeCC----CCHHHHHHHhHhcCCCEEEEECcCc
Confidence 34678888889887 5644 5777777887888988 66778553
No 254
>TIGR03006 pepcterm_polyde polysaccharide deactylase family protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide deacetylases (pfam01522). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene. The highest scoring homologs below the trusted cutoff for this model are found in several species of Methanosarcina, an archaeal genus.
Probab=31.75 E-value=1.8e+02 Score=28.28 Aligned_cols=94 Identities=12% Similarity=0.108 Sum_probs=58.6
Q ss_pred CcccHHHHHHHHHHHHhhCC-CCceEEecccc-cCHHHHHHHHHcCcEEecCCcc---c----------------ccccc
Q 017886 35 FCWGVERAVQIAYEARKQFP-EEKIWITNEII-HNPTVNKRLEEMAVQNIPVEEG---K----------------KQFDV 93 (364)
Q Consensus 35 FC~GV~RAi~~a~~~~~~~~-~~~vy~lG~iI-HN~~Vv~~L~~~Gv~~v~~~~~---~----------------~~~~~ 93 (364)
+-.+|+.-+..+.+++++++ +.-.|++|.++ ++|++++++.+.|-.+-..--. . +.+++
T Consensus 22 ~~~rv~~nt~riL~lL~~~gikATFFv~g~~~e~~p~lir~i~~~GhEIgsHg~sH~~l~~ls~ee~~~eI~~s~~~Le~ 101 (265)
T TIGR03006 22 LPCRVERNTDRILDLLDRHGVKATFFTLGWVAERYPELVRRIVAAGHELASHGYGHERVTTQTPEAFRADIRRSKALLED 101 (265)
T ss_pred ccchHHHhHHHHHHHHHHcCCcEEEEEeccchhhCHHHHHHHHHcCCEeeeccccCcCchhCCHHHHHHHHHHHHHHHHH
Confidence 33455555666666666643 24689999988 8999999999999877553100 0 01222
Q ss_pred ccCCC-EEEEcCCCCC-----HHHHHHHHhcCCcEEeccCch
Q 017886 94 VNKGD-VVVLPAFGAA-----VEEMVTLNNKNVQIVDTTCPW 129 (364)
Q Consensus 94 l~~g~-~VIIrAHGv~-----~~v~~~l~~~g~~iiDaTCP~ 129 (364)
+. |. ..-+|+-+-+ +...+.|++.|+...=..+|.
T Consensus 102 it-G~~~~gfRaP~~s~~~~t~~a~~iL~e~Gy~YdsS~~p~ 142 (265)
T TIGR03006 102 LS-GQPVRGYRAPSFSIGKKNLWALDVLAEAGYRYSSSIYPV 142 (265)
T ss_pred Hh-CCCceEEECCCCCCCCCcHHHHHHHHHCCCEEEEeeccC
Confidence 22 33 3468877632 334688888888875455565
No 255
>TIGR03863 PQQ_ABC_bind ABC transporter, substrate binding protein, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are putative substrate-binding proteins of an ABC transporter family that associates, in gene neighborhood and phylogenomic profile, with pyrroloquinoline-quinone (PQQ)-dependent degradation of certain alcohols, such as 2-phenylethanol in Pseudomonas putida U.
Probab=31.72 E-value=59 Score=32.43 Aligned_cols=59 Identities=8% Similarity=0.103 Sum_probs=39.7
Q ss_pred ccccccccHHHHHHHHHHHHhhhhCCCEEEEEcCCCCchhHHHHHHHHhhCCCeEEeC-CCCcc
Q 017886 257 FISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWID-SEKRI 319 (364)
Q Consensus 257 ~~v~nTIC~AT~~RQ~a~~eLa~~~vD~miVVGGknSSNT~rL~eia~~~~~~t~~Ie-~~~eL 319 (364)
+...|+ +++..- .+++++|. .+ ++.+|+|+..|+.+..+.+++++.+.+.+... +..+|
T Consensus 37 lv~~D~-~~p~~a-~~~a~~Li-~~-~V~~vvG~~~S~~~~Av~~~a~~~~vp~i~~~a~~~~l 96 (347)
T TIGR03863 37 LDEVAV-RTPEDL-VAALKALL-AQ-GVRFFVLDLPAAALLALADAAKAKGALLFNAGAPDDAL 96 (347)
T ss_pred EEEccC-CCHHHH-HHHHHHHH-HC-CCCEEEecCChHHHHHHHHHHHhCCcEEEeCCCCChHH
Confidence 344454 554444 45566776 33 57778999999999999999999887655433 23445
No 256
>cd00763 Bacterial_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include bacterial ATP-dependent phosphofructokinases. These are allosrterically regulated homotetramers; the subunits are of about 320 amino acids.
Probab=31.70 E-value=77 Score=31.76 Aligned_cols=43 Identities=23% Similarity=0.419 Sum_probs=32.0
Q ss_pred HHHHHHHHHHhhhhCCCEEEEEcCCCCchhH-HHHHHHHhhCCCeEEe
Q 017886 267 TQERQDAMYKMVEEKVDLILVVGGWNSSNTS-HLQEIAEDRGIPSYWI 313 (364)
Q Consensus 267 T~~RQ~a~~eLa~~~vD~miVVGGknSSNT~-rL~eia~~~~~~t~~I 313 (364)
...|+++++.|-+..+|.+++|||-.|-.+- +|.| .+.+...|
T Consensus 78 ~~~~~~~~~~l~~~~Id~Li~IGGdgs~~~a~~L~e----~~i~vigi 121 (317)
T cd00763 78 EEGQAKAIEQLKKHGIDALVVIGGDGSYMGAMRLTE----HGFPCVGL 121 (317)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCchHHHHHHHHHH----cCCCEEEe
Confidence 4578888888876789999999998776665 4443 36777655
No 257
>cd00296 SIR2 SIR2 superfamily of proteins includes silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation, where the acetyl group from the lysine epsilon-amino group is transferred to the ADP-ribose moiety of NAD+, producing nicotinamide and the novel metabolite O-acetyl-ADP-ribose. Sir2 proteins, also known as sirtuins, are found in all eukaryotes and many archaea and prokaryotes and have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The oligomerization state of Sir2 appears to be organism-dependent, sometimes occurring as a monomer and sometimes as a multimer. Also included in this superfamily is a group of uncharacterized Sir2-like proteins which lack certain key catalytic
Probab=31.39 E-value=1.1e+02 Score=27.91 Aligned_cols=47 Identities=28% Similarity=0.372 Sum_probs=36.8
Q ss_pred HHHHHHHHhhhhCCCEEEEEcC-CCCchhHHHHHHHHhhCCCeEEeCCCC
Q 017886 269 ERQDAMYKMVEEKVDLILVVGG-WNSSNTSHLQEIAEDRGIPSYWIDSEK 317 (364)
Q Consensus 269 ~RQ~a~~eLa~~~vD~miVVGG-knSSNT~rL~eia~~~~~~t~~Ie~~~ 317 (364)
...++++.+. ++|++||||= -.-.+...|.+.+++.+.+.+.|.-..
T Consensus 159 ~~~~~~~~~~--~~d~llviGtSl~v~~~~~l~~~~~~~~~~~~~in~~~ 206 (222)
T cd00296 159 WFDRALEALL--EADLVLVIGTSLTVYPAARLLLRAPERGAPVVIINREP 206 (222)
T ss_pred HHHHHHHHHh--cCCEEEEECCCccccCHHHHHHHHHHCCCcEEEECCCC
Confidence 3556666664 5899999996 566788999999988888888887543
No 258
>cd06277 PBP1_LacI_like_1 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=31.34 E-value=3.4e+02 Score=24.62 Aligned_cols=85 Identities=20% Similarity=0.253 Sum_probs=45.4
Q ss_pred EEEEEcCC--CChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHHHHHHH-hhhhCCCEEEEEcCCCCchh
Q 017886 220 VGIANQTT--MLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYK-MVEEKVDLILVVGGWNSSNT 296 (364)
Q Consensus 220 v~vvsQTT--~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ~a~~e-La~~~vD~miVVGGknSSNT 296 (364)
|+++--++ ++-.-|..+.+-+++...+. + -++...++=... +.|..+.+ |....+|.+|+.+...+
T Consensus 2 vgv~~~~~~~~~~~~~~~~~~~i~~~~~~~-g-----~~~~~~~~~~~~--~~~~~~~~~l~~~~vdgiii~~~~~~--- 70 (268)
T cd06277 2 IGLIASKRILNSPAFYSEIYRAIEEEAKKY-G-----YNLILKFVSDED--EEEFELPSFLEDGKVDGIILLGGIST--- 70 (268)
T ss_pred eEEEEeccccccCCcHHHHHHHHHHHHHHc-C-----CEEEEEeCCCCh--HHHHHHHHHHHHCCCCEEEEeCCCCh---
Confidence 44444332 44555677776666543322 2 123322222333 34444433 43468999999874322
Q ss_pred HHHHHHHHhhCCCeEEeCCC
Q 017886 297 SHLQEIAEDRGIPSYWIDSE 316 (364)
Q Consensus 297 ~rL~eia~~~~~~t~~Ie~~ 316 (364)
. .++.+++.+.|..+++..
T Consensus 71 ~-~~~~l~~~~ipvV~~~~~ 89 (268)
T cd06277 71 E-YIKEIKELGIPFVLVDHY 89 (268)
T ss_pred H-HHHHHhhcCCCEEEEccC
Confidence 2 244556778999888764
No 259
>PLN02449 ferrochelatase
Probab=31.34 E-value=3.1e+02 Score=29.34 Aligned_cols=37 Identities=14% Similarity=0.175 Sum_probs=26.5
Q ss_pred CCCEEEEcCCCCCHHHHHHHHhcCCcEEeccCchhHHHHHHHHHHhh
Q 017886 96 KGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKK 142 (364)
Q Consensus 96 ~g~~VIIrAHGv~~~v~~~l~~~g~~iiDaTCP~V~kv~~~v~~~~~ 142 (364)
++..++|+|||+|....++ +| .||-..++..++...+
T Consensus 275 ~~~~LlFSAHGlP~~~v~~---~G-------DpY~~q~~~ta~lI~~ 311 (485)
T PLN02449 275 EEVHIFFSAHGVPVSYVEE---AG-------DPYKAQMEECVDLIME 311 (485)
T ss_pred CCcEEEEecCCChhhhhhh---cC-------CChHHHHHHHHHHHHH
Confidence 4567999999999876532 23 4787777777766654
No 260
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=31.01 E-value=93 Score=25.58 Aligned_cols=39 Identities=15% Similarity=0.227 Sum_probs=31.8
Q ss_pred hCCCEEEEEcC-CCCchhHHHHHHHHhhCCCeEEeCCCCc
Q 017886 280 EKVDLILVVGG-WNSSNTSHLQEIAEDRGIPSYWIDSEKR 318 (364)
Q Consensus 280 ~~vD~miVVGG-knSSNT~rL~eia~~~~~~t~~Ie~~~e 318 (364)
.+-|++|++.- .+|.++..+++.|+++|.+++-|.+..+
T Consensus 46 ~~~d~vi~iS~sG~t~~~~~~~~~a~~~g~~vi~iT~~~~ 85 (128)
T cd05014 46 TPGDVVIAISNSGETDELLNLLPHLKRRGAPIIAITGNPN 85 (128)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 35699999975 5777788999999999999999888654
No 261
>PLN02424 ketopantoate hydroxymethyltransferase
Probab=30.90 E-value=1.7e+02 Score=29.74 Aligned_cols=99 Identities=14% Similarity=0.136 Sum_probs=64.5
Q ss_pred EEE-eCCCC-CcccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHHcCcEEecCCccccccccccCCCEEE--E
Q 017886 27 VKL-AESYG-FCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVV--L 102 (364)
Q Consensus 27 I~l-A~~~G-FC~GV~RAi~~a~~~~~~~~~~~vy~lG~iIHN~~Vv~~L~~~Gv~~v~~~~~~~~~~~l~~g~~VI--I 102 (364)
+.+ .=|+| |.-..+.|++-|.+.+++.+-.-|.+=|-..+.-..++.|-+.||.++-... |. |+-.... +
T Consensus 98 ~vVaDmPfgSY~~s~e~av~nA~rl~~eaGa~aVKlEGg~~~~~~~I~~l~~~GIPV~gHiG----Lt--PQs~~~lGGy 171 (332)
T PLN02424 98 LLVGDLPFGSYESSTDQAVESAVRMLKEGGMDAVKLEGGSPSRVTAAKAIVEAGIAVMGHVG----LT--PQAISVLGGF 171 (332)
T ss_pred EEEeCCCCCCCCCCHHHHHHHHHHHHHHhCCcEEEECCCcHHHHHHHHHHHHcCCCEEEeec----cc--ceeehhhcCc
Confidence 444 45777 7778999999999997754334588887766666889999999999985421 10 2211111 5
Q ss_pred cCCCCCHHH-------HHHHHhcCCcEEeccCchhH
Q 017886 103 PAFGAAVEE-------MVTLNNKNVQIVDTTCPWVS 131 (364)
Q Consensus 103 rAHGv~~~v-------~~~l~~~g~~iiDaTCP~V~ 131 (364)
|..|-+.+. -..+++.|..-|=-.|---.
T Consensus 172 kvqGr~~~~a~~li~dA~ale~AGAf~ivLE~Vp~~ 207 (332)
T PLN02424 172 RPQGRTAESAVKVVETALALQEAGCFAVVLECVPAP 207 (332)
T ss_pred cccCCCHHHHHHHHHHHHHHHHcCCcEEEEcCCcHH
Confidence 667777663 34455667666666665544
No 262
>PRK13938 phosphoheptose isomerase; Provisional
Probab=30.84 E-value=1.1e+02 Score=28.30 Aligned_cols=56 Identities=14% Similarity=0.052 Sum_probs=40.2
Q ss_pred ccccHHHHHHHHHHHHhhhhCCCEEEEEcC-CCCchhHHHHHHHHhhCCCeEEeCCCCc
Q 017886 261 NTICDATQERQDAMYKMVEEKVDLILVVGG-WNSSNTSHLQEIAEDRGIPSYWIDSEKR 318 (364)
Q Consensus 261 nTIC~AT~~RQ~a~~eLa~~~vD~miVVGG-knSSNT~rL~eia~~~~~~t~~Ie~~~e 318 (364)
|...+++.-...-. ..+ .+-|++|++-. -+|.|+..+++.|++.|.++..|.+..+
T Consensus 95 nd~~~~~~~~~~~~-~~~-~~~DllI~iS~SG~t~~vi~a~~~Ak~~G~~vI~iT~~~~ 151 (196)
T PRK13938 95 NDYDYDTVFARALE-GSA-RPGDTLFAISTSGNSMSVLRAAKTARELGVTVVAMTGESG 151 (196)
T ss_pred ccccHHHHHHHHHH-hcC-CCCCEEEEEcCCCCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 44555554333333 344 46799999876 4788999999999999999999887543
No 263
>cd06333 PBP1_ABC-type_HAAT_like Type I periplasmic binding component of ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in uptake of amino acids. This subgroup includes the type I periplasmic binding component of ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in uptake of amino acids. Members of this subgroup are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); their ligand specificity has not been determined experimentally, however.
Probab=30.84 E-value=1.3e+02 Score=28.39 Aligned_cols=61 Identities=16% Similarity=0.238 Sum_probs=40.6
Q ss_pred cccccccccHHHHHHHHHHHHhhhhCCCEEEEEcCCCCchhHHHHHHHHhhCCCeEEeCCCCc
Q 017886 256 HFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKR 318 (364)
Q Consensus 256 ~~~v~nTIC~AT~~RQ~a~~eLa~~~vD~miVVGGknSSNT~rL~eia~~~~~~t~~Ie~~~e 318 (364)
++.+.|+-|..... ++.+++|.. +-.+..|||...|+++..+++++++.+.|.+.+....+
T Consensus 41 ~l~~~d~~~~~~~a-~~~~~~li~-~~~v~~vig~~~s~~~~~~~~~~~~~~vP~v~~~~~~~ 101 (312)
T cd06333 41 ELIVLDDGSDPTKA-VTNARKLIE-EDKVDAIIGPSTTPATMAVAPVAEEAKTPMISLAPAAA 101 (312)
T ss_pred EEEEecCCCCHHHH-HHHHHHHHh-hCCeEEEECCCCCHHHHHHHHHHHhcCCCEEEccCCcc
Confidence 45566777765433 245666652 22344456777788888888999889999888776443
No 264
>TIGR02764 spore_ybaN_pdaB polysaccharide deacetylase family sporulation protein PdaB. This model describes the YbaN protein family, also called PdaB and SpoVIE, of Gram-positive bacteria. Although ybaN null mutants have only a mild sporulation defect, ybaN/ytrI double mutants show drastically reducted sporulation efficiencies. This synthetic defect suggests the role of this sigmaE-controlled gene in sporulation had been masked by functional redundancy. Members of this family are homologous to a characterized polysaccharide deacetylase; the exact function this protein family is unknown.
Probab=30.83 E-value=3e+02 Score=24.51 Aligned_cols=44 Identities=16% Similarity=0.129 Sum_probs=32.3
Q ss_pred CCHHHHHHHHhcCCcEEec-------cCchhHHHHHHHHHHhhCCCeEEEE
Q 017886 107 AAVEEMVTLNNKNVQIVDT-------TCPWVSKVWTSVEKHKKGDYTSIIH 150 (364)
Q Consensus 107 v~~~v~~~l~~~g~~iiDa-------TCP~V~kv~~~v~~~~~~Gy~iIIi 150 (364)
.++..++.+++.|+.+++- ..|-+.++.+.+.+..+.|.-|+++
T Consensus 108 ~~~~~~~~l~~~G~~~v~w~~~~~D~~~~~~~~i~~~~~~~~~~g~Iil~H 158 (191)
T TIGR02764 108 FNKAVLKAAESLGYTVVHWSVDSRDWKNPGVESIVDRVVKNTKPGDIILLH 158 (191)
T ss_pred CCHHHHHHHHHcCCeEEEecCCCCccCCCCHHHHHHHHHhcCCCCCEEEEe
Confidence 5688899999999998653 3566777777777777778655555
No 265
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=30.66 E-value=2.1e+02 Score=28.94 Aligned_cols=78 Identities=14% Similarity=0.235 Sum_probs=47.0
Q ss_pred ceEEEEEcCCCChH-HHHHHHHHHHHHHhhhccccccccccccccccc-HHHHHHHH-HHHHhhhhCCCEEEEEcCCCCc
Q 017886 218 VKVGIANQTTMLKG-ETEEIGKLVEKTMMRKFGVENVNEHFISFNTIC-DATQERQD-AMYKMVEEKVDLILVVGGWNSS 294 (364)
Q Consensus 218 ~kv~vvsQTT~~~~-~~~~i~~~l~~~~~~~~~~~~~~~~~~v~nTIC-~AT~~RQ~-a~~eLa~~~vD~miVVGGknSS 294 (364)
+++.||.-..+... -++++.+.|++ .+.++.+|+.++ +.|.+-=+ ++..+-...+|++|=|||=.+-
T Consensus 31 ~~~lvvtd~~~~~~g~~~~v~~~L~~----------~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGS~i 100 (382)
T PRK10624 31 KKALIVTDKTLVKCGVVAKVTDVLDA----------AGLAYEIYDGVKPNPTIEVVKEGVEVFKASGADYLIAIGGGSPQ 100 (382)
T ss_pred CEEEEEeCcchhhCcchHHHHHHHHH----------CCCeEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCChHHH
Confidence 57888876544332 56667666654 122345565554 33332222 3333323479999999999999
Q ss_pred hhHHHHHHHHh
Q 017886 295 NTSHLQEIAED 305 (364)
Q Consensus 295 NT~rL~eia~~ 305 (364)
.+-|..-+...
T Consensus 101 D~aK~ia~~~~ 111 (382)
T PRK10624 101 DTCKAIGIISN 111 (382)
T ss_pred HHHHHHHHHHH
Confidence 99988776543
No 266
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=30.60 E-value=79 Score=25.80 Aligned_cols=43 Identities=12% Similarity=0.129 Sum_probs=30.7
Q ss_pred cCCCE-EEEcCCCCCHHH---HHHHHhcCCcEEeccCchhHHHHHHH
Q 017886 95 NKGDV-VVLPAFGAAVEE---MVTLNNKNVQIVDTTCPWVSKVWTSV 137 (364)
Q Consensus 95 ~~g~~-VIIrAHGv~~~v---~~~l~~~g~~iiDaTCP~V~kv~~~v 137 (364)
.++|. ++|+..|-+++. .+.|+++|..+|--||.--..+.+.+
T Consensus 52 ~~~d~vi~is~sg~~~~~~~~~~~ak~~g~~vi~iT~~~~~~l~~~a 98 (131)
T PF01380_consen 52 DPDDLVIIISYSGETRELIELLRFAKERGAPVILITSNSESPLARLA 98 (131)
T ss_dssp STTEEEEEEESSSTTHHHHHHHHHHHHTTSEEEEEESSTTSHHHHHS
T ss_pred cccceeEeeeccccchhhhhhhHHHHhcCCeEEEEeCCCCCchhhhC
Confidence 34564 568889999885 45677788888888877766665444
No 267
>cd02191 FtsZ FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=30.59 E-value=1.3e+02 Score=29.72 Aligned_cols=44 Identities=18% Similarity=0.310 Sum_probs=36.2
Q ss_pred HHHHHHhhhhCCCEEEEE----cCCCCchhHHHHHHHHhhCCCeEEeCC
Q 017886 271 QDAMYKMVEEKVDLILVV----GGWNSSNTSHLQEIAEDRGIPSYWIDS 315 (364)
Q Consensus 271 Q~a~~eLa~~~vD~miVV----GGknSSNT~rL~eia~~~~~~t~~Ie~ 315 (364)
++.++++. ..+|.++|+ ||..|.=+..|++++++.+..+|-|=+
T Consensus 75 ~~~I~~~l-e~~D~v~i~aglGGGTGSG~ap~ia~~~ke~~~~~~~vvt 122 (303)
T cd02191 75 QEAIDNIP-VHVDMVFITAGLGGGTGTGGAPVVAEHLKRIGTLTVAVVT 122 (303)
T ss_pred HHHHHHHH-cCCCEEEEEeccCCccchhHHHHHHHHHHHhCCCEEEEEe
Confidence 44567776 579999988 678999999999999999988877755
No 268
>PTZ00286 6-phospho-1-fructokinase; Provisional
Probab=30.40 E-value=83 Score=33.29 Aligned_cols=54 Identities=9% Similarity=0.189 Sum_probs=38.7
Q ss_pred HHHHHHHHHhhhhCCCEEEEEcCCCCchhH-HHHHHHHhhCCCeEEeCCCCccCC
Q 017886 268 QERQDAMYKMVEEKVDLILVVGGWNSSNTS-HLQEIAEDRGIPSYWIDSEKRIGP 321 (364)
Q Consensus 268 ~~RQ~a~~eLa~~~vD~miVVGGknSSNT~-rL~eia~~~~~~t~~Ie~~~eL~~ 321 (364)
.++++.+..|-+..+|.+++|||-.|-.+. +|++-++++|.+.=.|-=++=||.
T Consensus 163 ~~~~~iv~~L~~~~I~~L~vIGGdgT~~~A~~L~ee~~~~g~~I~VIGIPKTIDN 217 (459)
T PTZ00286 163 FDPKVMVDTLIRHGINILFTLGGDGTHRGALAIYKELRRRKLNISVVGIPKTIDN 217 (459)
T ss_pred hhHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHHhCCCceEEEeccccCC
Confidence 367777777766789999999999998776 789888888743323333444443
No 269
>COG1609 PurR Transcriptional regulators [Transcription]
Probab=30.40 E-value=5.4e+02 Score=25.36 Aligned_cols=124 Identities=22% Similarity=0.292 Sum_probs=67.5
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHHHHH-HHhhhhCCCEEEEEcCCCCchh
Q 017886 218 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAM-YKMVEEKVDLILVVGGWNSSNT 296 (364)
Q Consensus 218 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ~a~-~eLa~~~vD~miVVGGknSSNT 296 (364)
.-|+++.-...+ .-|.+++.-+.+...+. +-++.+.++ .-..++++.+ ..|.+.++|.+|+.| .++|
T Consensus 59 ~~Ig~i~p~~~~-~~~~~i~~gi~~~~~~~------gy~~~l~~~--~~~~~~e~~~~~~l~~~~vdGiIi~~--~~~~- 126 (333)
T COG1609 59 KTIGLVVPDITN-PFFAEILKGIEEAAREA------GYSLLLANT--DDDPEKEREYLETLLQKRVDGLILLG--ERPN- 126 (333)
T ss_pred CEEEEEeCCCCC-chHHHHHHHHHHHHHHc------CCEEEEECC--CCCHHHHHHHHHHHHHcCCCEEEEec--CCCC-
Confidence 467777664444 77888888887643322 122332222 2233444444 334457899999999 4444
Q ss_pred HHHHHHHHhhCCCeEEeCCCCccCCCC-cchhhhccchhhhhcccC-CCCCCEEEEEeCCC
Q 017886 297 SHLQEIAEDRGIPSYWIDSEKRIGPGN-KIAYKLMHGELVEKENWL-PKGQITIGITSGAS 355 (364)
Q Consensus 297 ~rL~eia~~~~~~t~~Ie~~~eL~~~~-~~~~~~~~~~~~~~~~wl-~~~~~~VGITAGAS 355 (364)
..+.+...+.+.|...|..... ++.. -+......| ....-++| ..|+++||+-+|..
T Consensus 127 ~~~~~~l~~~~~P~V~i~~~~~-~~~~~~V~~Dn~~~-~~~a~~~L~~~G~~~i~~i~~~~ 185 (333)
T COG1609 127 DSLLELLAAAGIPVVVIDRSPP-GLGVPSVGIDNFAG-AYLATEHLIELGHRRIAFIGGPL 185 (333)
T ss_pred HHHHHHHHhcCCCEEEEeCCCc-cCCCCEEEEChHHH-HHHHHHHHHHCCCceEEEEeCCC
Confidence 4455556677899999998655 2210 011101111 00111223 24789999999874
No 270
>smart00852 MoCF_biosynth Probable molybdopterin binding domain. This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor. The domain is presumed to bind molybdopterin. The structure of this domain is known, and it forms an alpha/beta structure. In the known structure of Gephyrin this domain mediates trimerisation.
Probab=30.36 E-value=34 Score=29.18 Aligned_cols=66 Identities=26% Similarity=0.298 Sum_probs=0.0
Q ss_pred EEEEEcC----C---CCchhHHHHHHHHhhCCCeEEe----CCCCccCCCCcchhhhccchhhhhcccCCCCCCEEEEEe
Q 017886 284 LILVVGG----W---NSSNTSHLQEIAEDRGIPSYWI----DSEKRIGPGNKIAYKLMHGELVEKENWLPKGQITIGITS 352 (364)
Q Consensus 284 ~miVVGG----k---nSSNT~rL~eia~~~~~~t~~I----e~~~eL~~~~~~~~~~~~~~~~~~~~wl~~~~~~VGITA 352 (364)
.++.+|+ . ..+|..-|.+.+++.|...... ++.++|.. .+. .|+ +.+..|=+|.
T Consensus 1 ~vi~~GdEi~~~~~~~d~~~~~l~~~l~~~G~~~~~~~~v~Dd~~~I~~--~l~------------~~~-~~~dliittG 65 (135)
T smart00852 1 AIISTGDELLSGGQIYDSNGPALAELLTELGIEVTRYVIVPDDKEAIKE--ALR------------EAL-ERADLVITTG 65 (135)
T ss_pred CEEEEechhhcCCCcccCcHHHHHHHHHHCCCeEEEEEEeCCCHHHHHH--HHH------------HHH-hCCCEEEEcC
Q ss_pred CCC-CCHHHHhcC
Q 017886 353 GAS-TPDKVISSA 364 (364)
Q Consensus 353 GAS-TP~~lI~e~ 364 (364)
|+| +|+.++.++
T Consensus 66 G~g~g~~D~t~~~ 78 (135)
T smart00852 66 GTGPGPDDVTPEA 78 (135)
T ss_pred CCCCCCCcCcHHH
No 271
>TIGR03310 matur_ygfJ molybdenum hydroxylase accessory protein, YgfJ family. Members of this protein family are probable accessory proteins for the biosynthesis of enzymes related to xanthine dehydrogenase. Comparative genomics suggests a role in the maturation of selenium-dependent molybdenum hydroxylases, although a tenuous alternative hypothesis is a role for this protein (with a requirement for SelD, the selenium donor protein in the selenocysteine and selenouridine biosynthesis pathways) metabolizing a selenium-containing substrate such as selenate.
Probab=30.30 E-value=1.6e+02 Score=25.59 Aligned_cols=39 Identities=15% Similarity=0.172 Sum_probs=27.0
Q ss_pred CCcEEeccCchhH--HHHHHHHHHhhCCCeEEEE---ecCCCce
Q 017886 119 NVQIVDTTCPWVS--KVWTSVEKHKKGDYTSIIH---GKYSHEE 157 (364)
Q Consensus 119 g~~iiDaTCP~V~--kv~~~v~~~~~~Gy~iIIi---G~~~HpE 157 (364)
.+-|+++..|++. -+.+.++.+.+.+..+++. |.+.||=
T Consensus 92 ~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~Pl 135 (188)
T TIGR03310 92 GYLFLLGDQPFVTPDIIQLLLEAFALKNDEIVVPLYKGKRGHPV 135 (188)
T ss_pred EEEEEeCCcCCCCHHHHHHHHHHHHhCCCcEEEeecCCccCCCE
Confidence 4778999999985 5666666666666666654 3566773
No 272
>cd08182 HEPD Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP). Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP) with either NADH or NADPH as a cofactor. NADH is the preferred cofactor. PnAA is a biosynthetic intermediate for several phosphonates such as the antibiotic fosfomycin, phosphinothricin tripeptide (PTT), and 2-aminoethylphosphonate (AEP). This enzyme is named PhpC in PTT biosynthesis pathway in Streptomyces hygroscopicus and S. viridochromogenes. Members of this family are only found in bacteria.
Probab=30.27 E-value=2.5e+02 Score=28.12 Aligned_cols=76 Identities=14% Similarity=0.163 Sum_probs=46.7
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccccc-cHHHHHHHHHHHHhh-hhCCCEEEEEcCCCCch
Q 017886 218 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTI-CDATQERQDAMYKMV-EEKVDLILVVGGWNSSN 295 (364)
Q Consensus 218 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~v~nTI-C~AT~~RQ~a~~eLa-~~~vD~miVVGGknSSN 295 (364)
+|+.+|+-.+.. ....+.+.|++ . +.++.+|+.+ .+.|.+.=+++.+++ ...+|++|-|||=.+-.
T Consensus 24 ~~~livtd~~~~--~~~~~~~~l~~----~------~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGGs~~D 91 (367)
T cd08182 24 KRVLLVTGPRSA--IASGLTDILKP----L------GTLVVVFDDVQPNPDLEDLAAGIRLLREFGPDAVLAVGGGSVLD 91 (367)
T ss_pred CeEEEEeCchHH--HHHHHHHHHHH----c------CCeEEEEcCcCCCcCHHHHHHHHHHHHhcCcCEEEEeCCcHHHH
Confidence 478888755443 34455555543 1 1234445444 455555544555554 23689999999999999
Q ss_pred hHHHHHHHHh
Q 017886 296 TSHLQEIAED 305 (364)
Q Consensus 296 T~rL~eia~~ 305 (364)
+-|.+-+.-.
T Consensus 92 ~aK~ia~~~~ 101 (367)
T cd08182 92 TAKALAALLG 101 (367)
T ss_pred HHHHHHHHHh
Confidence 9998776543
No 273
>PRK13936 phosphoheptose isomerase; Provisional
Probab=30.25 E-value=1.2e+02 Score=27.82 Aligned_cols=38 Identities=18% Similarity=0.244 Sum_probs=32.7
Q ss_pred hCCCEEEEEcCC-CCchhHHHHHHHHhhCCCeEEeCCCC
Q 017886 280 EKVDLILVVGGW-NSSNTSHLQEIAEDRGIPSYWIDSEK 317 (364)
Q Consensus 280 ~~vD~miVVGGk-nSSNT~rL~eia~~~~~~t~~Ie~~~ 317 (364)
.+-|++|+|... +|.++..+++.|++.|.++.-|.+..
T Consensus 110 ~~~Dv~i~iS~sG~t~~~~~~~~~ak~~g~~iI~IT~~~ 148 (197)
T PRK13936 110 QPGDVLLAISTSGNSANVIQAIQAAHEREMHVVALTGRD 148 (197)
T ss_pred CCCCEEEEEeCCCCcHHHHHHHHHHHHCCCeEEEEECCC
Confidence 467999999874 77889999999999999999998854
No 274
>PRK13937 phosphoheptose isomerase; Provisional
Probab=30.05 E-value=1.3e+02 Score=27.22 Aligned_cols=38 Identities=18% Similarity=0.198 Sum_probs=31.8
Q ss_pred hCCCEEEEEcC-CCCchhHHHHHHHHhhCCCeEEeCCCC
Q 017886 280 EKVDLILVVGG-WNSSNTSHLQEIAEDRGIPSYWIDSEK 317 (364)
Q Consensus 280 ~~vD~miVVGG-knSSNT~rL~eia~~~~~~t~~Ie~~~ 317 (364)
.+-|++|+|.. -+|.++...++.|++.|.+++.|.+..
T Consensus 105 ~~~Dl~i~iS~sG~t~~~~~~~~~ak~~g~~~I~iT~~~ 143 (188)
T PRK13937 105 RPGDVLIGISTSGNSPNVLAALEKARELGMKTIGLTGRD 143 (188)
T ss_pred CCCCEEEEEeCCCCcHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 46799999974 578888899999999999999998754
No 275
>cd06297 PBP1_LacI_like_12 Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs. Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=29.96 E-value=4.1e+02 Score=24.32 Aligned_cols=45 Identities=16% Similarity=0.053 Sum_probs=30.1
Q ss_pred HHHHHHHH-hhhhCCCEEEEEcCCCCchhHHHHHHHHhhCCCeEEeCCC
Q 017886 269 ERQDAMYK-MVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSE 316 (364)
Q Consensus 269 ~RQ~a~~e-La~~~vD~miVVGGknSSNT~rL~eia~~~~~~t~~Ie~~ 316 (364)
..++.+.+ |.+.++|.+|+.+... |. ..++.+++.+.|...+.+.
T Consensus 42 ~~~~~~~~~l~~~~vdgvi~~~~~~--~~-~~~~~l~~~~iPvv~~~~~ 87 (269)
T cd06297 42 RLKRYLESTTLAYLTDGLLLASYDL--TE-RLAERRLPTERPVVLVDAE 87 (269)
T ss_pred HHHHHHHHHHHhcCCCEEEEecCcc--Ch-HHHHHHhhcCCCEEEEccC
Confidence 33455543 5446899999997543 33 4455566788999999874
No 276
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=29.86 E-value=1.3e+02 Score=24.50 Aligned_cols=20 Identities=25% Similarity=0.331 Sum_probs=13.8
Q ss_pred EEEEcCCCCCHH-HHHHHHhc
Q 017886 99 VVVLPAFGAAVE-EMVTLNNK 118 (364)
Q Consensus 99 ~VIIrAHGv~~~-v~~~l~~~ 118 (364)
..||.|+|-+++ +.+.+++|
T Consensus 58 ~pVInA~G~T~eEI~~~v~~r 78 (80)
T PF03698_consen 58 VPVINASGLTAEEIVQEVEER 78 (80)
T ss_pred ceEEecCCCCHHHHHHHHHHh
Confidence 367899998876 45555543
No 277
>KOG3043 consensus Predicted hydrolase related to dienelactone hydrolase [General function prediction only]
Probab=29.72 E-value=12 Score=36.19 Aligned_cols=33 Identities=30% Similarity=0.647 Sum_probs=22.2
Q ss_pred cchHHHHHHHcCCcccccceEEEEeCCCCCcccHHHHHHHH
Q 017886 6 TSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIA 46 (364)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~mkI~lA~~~GFC~GV~RAi~~a 46 (364)
++.+++.||+.|-.... .-.|||||-+++|+.-
T Consensus 106 i~~v~k~lk~~g~~kkI--------Gv~GfCwGak~vv~~~ 138 (242)
T KOG3043|consen 106 ITAVVKWLKNHGDSKKI--------GVVGFCWGAKVVVTLS 138 (242)
T ss_pred HHHHHHHHHHcCCccee--------eEEEEeecceEEEEee
Confidence 34567777755544333 3469999999988764
No 278
>cd06283 PBP1_RegR_EndR_KdgR_like Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR. Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR, all of which are members of the LacI-GalR family of bacterial transcription regulators. RegR regulates bacterial competence and the expression of virulence factors, including hyaluronidase. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=29.59 E-value=4.2e+02 Score=23.78 Aligned_cols=42 Identities=19% Similarity=0.247 Sum_probs=28.2
Q ss_pred HHHHHhhhhCCCEEEEEcCCCCchhHHHHHHHHhhCCCeEEeCCC
Q 017886 272 DAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSE 316 (364)
Q Consensus 272 ~a~~eLa~~~vD~miVVGGknSSNT~rL~eia~~~~~~t~~Ie~~ 316 (364)
+.++.|....+|.+|+.+... |...| +.+++.+.|...+++.
T Consensus 46 ~~~~~l~~~~~dgiii~~~~~--~~~~l-~~~~~~~ipvV~~~~~ 87 (267)
T cd06283 46 EYLESLLAYQVDGLIVNPTGN--NKELY-QRLAKNGKPVVLVDRK 87 (267)
T ss_pred HHHHHHHHcCcCEEEEeCCCC--ChHHH-HHHhcCCCCEEEEcCC
Confidence 344555556899999987643 33334 5566788999999874
No 279
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=29.59 E-value=2.3e+02 Score=28.53 Aligned_cols=78 Identities=17% Similarity=0.210 Sum_probs=46.7
Q ss_pred ceEEEEEcCCC--ChHHHHHHHHHHHHHHhhhccccccccccccccccc-HHHHHHHHHHHHhh-hhCCCEEEEEcCCCC
Q 017886 218 VKVGIANQTTM--LKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTIC-DATQERQDAMYKMV-EEKVDLILVVGGWNS 293 (364)
Q Consensus 218 ~kv~vvsQTT~--~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~v~nTIC-~AT~~RQ~a~~eLa-~~~vD~miVVGGknS 293 (364)
+|+.+|.-... ....++++.+.|++ .+.++.+|+.+. +.|.+-=+++.+++ ...+|++|=|||=.+
T Consensus 26 ~r~livt~~~~~~~~g~~~~v~~~L~~----------~~~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IiavGGGS~ 95 (380)
T cd08185 26 KKALIVTGNGSSKKTGYLDRVIELLKQ----------AGVEVVVFDKVEPNPTTTTVMEGAALAREEGCDFVVGLGGGSS 95 (380)
T ss_pred CeEEEEeCCCchhhccHHHHHHHHHHH----------cCCeEEEeCCccCCCCHHHHHHHHHHHHHcCCCEEEEeCCccH
Confidence 47888886543 34556667766654 112344555443 22322222222222 247999999999999
Q ss_pred chhHHHHHHHHh
Q 017886 294 SNTSHLQEIAED 305 (364)
Q Consensus 294 SNT~rL~eia~~ 305 (364)
-.+-|.+-+...
T Consensus 96 iD~aK~ia~~~~ 107 (380)
T cd08185 96 MDTAKAIAFMAA 107 (380)
T ss_pred HHHHHHHHHHhh
Confidence 999998877643
No 280
>TIGR01279 DPOR_bchN light-independent protochlorophyllide reductase, N subunit. This enzyme describes the N subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme involved in bacteriochlorophyll biosynthesis. This subunit shows homology to the nitrogenase molybdenum-iron protein NifN.
Probab=29.43 E-value=6.3e+02 Score=25.84 Aligned_cols=103 Identities=14% Similarity=0.217 Sum_probs=56.2
Q ss_pred ceEEEEeCCCCCcccHHHHHHHHHHHH----h-hCC--CCceEEecccccCHH----HHHHHHHcCcEEecCCccccccc
Q 017886 24 NVKVKLAESYGFCWGVERAVQIAYEAR----K-QFP--EEKIWITNEIIHNPT----VNKRLEEMAVQNIPVEEGKKQFD 92 (364)
Q Consensus 24 ~mkI~lA~~~GFC~GV~RAi~~a~~~~----~-~~~--~~~vy~lG~iIHN~~----Vv~~L~~~Gv~~v~~~~~~~~~~ 92 (364)
+..|+.+..-||..+...+.+.+.+++ . ..+ +..+-.+|+ +|+. +..-|+++|+.++.-.+.. +++
T Consensus 115 ~~pVi~v~tpgf~g~~~~G~~~~~~alv~~~~~~~~~~~~~vniiG~--~~~~d~~elk~lL~~~Gi~v~~~lpd~-~~~ 191 (407)
T TIGR01279 115 GVPVLFAPASGLDYTFTQGEDTVLAALVPFCPEAPASEQRALVLVGS--VNDIVADQLRLELKQLGIPVVGFLPAS-HFT 191 (407)
T ss_pred CCCEEEeeCCCccccHHHHHHHHHHHHHHhhccccCCCCCcEEEEec--cChhhHHHHHHHHHHcCCeEEEEeCCC-Ccc
Confidence 456788888899755445544444322 1 111 246888997 5663 4455688899886211111 233
Q ss_pred ccc--CCCEEEEcCCCCCHHHHHHHHh-cCCcEEeccCch
Q 017886 93 VVN--KGDVVVLPAFGAAVEEMVTLNN-KNVQIVDTTCPW 129 (364)
Q Consensus 93 ~l~--~g~~VIIrAHGv~~~v~~~l~~-~g~~iiDaTCP~ 129 (364)
+++ .+.+.++.-+......-+.|++ .|+..+...-|+
T Consensus 192 e~~~~~~~~~~~~~~~~~~~~A~~Le~~~GiP~~~~~~Pi 231 (407)
T TIGR01279 192 ELPVIGPGTVVAPLQPYLSDTATTLRRERGAKVLSAPFPF 231 (407)
T ss_pred hhhhcCCCeEEEEechHHHHHHHHHHHHhCCccccCCCCc
Confidence 443 2333333222222245566655 688887776665
No 281
>TIGR01417 PTS_I_fam phosphoenolpyruvate-protein phosphotransferase. This model recognizes a distinct clade of phophoenolpyruvate (PEP)-dependent enzymes. Most members are known or deduced to function as the phosphoenolpyruvate-protein phosphotransferase (or enzyme I) of PTS sugar transport systems. However, some species with both a member of this family and a homolog of the phosphocarrier protein HPr lack a IIC component able to serve as a permease. An HPr homolog designated NPr has been implicated in the regulation of nitrogen assimilation, which demonstrates that not all phosphotransferase system components are associated directly with PTS transport.
Probab=29.39 E-value=95 Score=33.58 Aligned_cols=50 Identities=12% Similarity=0.106 Sum_probs=44.1
Q ss_pred CCCcccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHHcCcEEec
Q 017886 33 YGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIP 83 (364)
Q Consensus 33 ~GFC~GV~RAi~~a~~~~~~~~~~~vy~lG~iIHN~~Vv~~L~~~Gv~~v~ 83 (364)
..+-..|.++|+.+.++.++. +.++.+.|++.-+|..+..|-.+|+..+.
T Consensus 474 ~~~hPaV~~~i~~vi~~a~~~-g~~v~vCGe~a~~p~~~~~l~~~G~~~ls 523 (565)
T TIGR01417 474 QPYNPAVLRLIKLVIDAAKAE-GIWVGMCGEMAGDERAIPLLLGLGLRELS 523 (565)
T ss_pred CCCCHHHHHHHHHHHHHHHHc-CCeEEEeCCcCCCHHHHHHHHHCCCCEEE
Confidence 446789999999998888765 47899999999999999999999999885
No 282
>cd06360 PBP1_alkylbenzenes_like Type I periplasmic binding component of active transport systems that are predicted be involved in anaerobic biodegradation of alkylbenzenes such as toluene and ethylbenzene. This group includes the type I periplasmic binding component of active transport systems that are predicted be involved in anaerobic biodegradation of alkylbenzenes such as toluene and ethylbenzene; their substrate specificity is not well characterized, however.
Probab=29.36 E-value=1.2e+02 Score=28.87 Aligned_cols=59 Identities=20% Similarity=0.318 Sum_probs=42.6
Q ss_pred cccccccccHHHHHHHHHHHHhhh-hCCCEEEEEcCCCCchhHHHHHHHHhhCCCeEEeCCCC
Q 017886 256 HFISFNTICDATQERQDAMYKMVE-EKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEK 317 (364)
Q Consensus 256 ~~~v~nTIC~AT~~RQ~a~~eLa~-~~vD~miVVGGknSSNT~rL~eia~~~~~~t~~Ie~~~ 317 (364)
++.+.||-+.....+ +++++|.. ..+|+ |||+..|+.+..+.+++++.+.|.....+..
T Consensus 40 ~l~~~D~~~~~~~~~-~~~~~lv~~~~v~~--iig~~~s~~~~~~~~~~~~~~ip~v~~~~~~ 99 (336)
T cd06360 40 EFVVEDDEAKPDVAV-EKARKLIEQDKVDV--VVGPVHSGEALAMVKVLREPGTPLINPNAGA 99 (336)
T ss_pred EEEEcCCCCChHHHH-HHHHHHHHHhCCcE--EEccCccHhHHHHHHHHHhcCceEEecCCCC
Confidence 456778888765444 66777752 35666 6788888888889999988888887776543
No 283
>cd03130 GATase1_CobB Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. CobB plays a role in cobalamin biosythesis catalyzing the conversion of cobyrinic acid to cobyrinic acid a,c-diamide. CobB belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobB.
Probab=29.35 E-value=3.4e+02 Score=24.85 Aligned_cols=44 Identities=11% Similarity=0.045 Sum_probs=28.5
Q ss_pred ccCCCEEEEcCCCCCHHHHHHHHhcCCcEEeccCchhHHHHHHHHHHhhCCCeEEEE
Q 017886 94 VNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIH 150 (364)
Q Consensus 94 l~~g~~VIIrAHGv~~~v~~~l~~~g~~iiDaTCP~V~kv~~~v~~~~~~Gy~iIIi 150 (364)
+++=|.|||+- |-+....+.|+++ ..+.+.++++.++|..|+-+
T Consensus 38 l~~~D~lilPG-G~~~~~~~~L~~~------------~~~~~~i~~~~~~g~pilgI 81 (198)
T cd03130 38 LPDADGLYLGG-GYPELFAEELSAN------------QSMRESIRAFAESGGPIYAE 81 (198)
T ss_pred CCCCCEEEECC-CchHHHHHHHHhh------------HHHHHHHHHHHHcCCCEEEE
Confidence 34346799998 8766555666442 34677778888888655433
No 284
>TIGR02637 RhaS rhamnose ABC transporter, rhamnose-binding protein. This sugar-binding component of ABC transporter complexes is found in rhamnose catabolism operon contexts. Mutation of this gene in Rhizobium leguminosarum abolishes rhamnose transport and prevents growth on rhamnose as a carbon source.
Probab=29.34 E-value=4.5e+02 Score=24.63 Aligned_cols=48 Identities=25% Similarity=0.291 Sum_probs=30.5
Q ss_pred HHHH-HHHHHhhhhCCCEEEEEcCCCCchhHHHHHHHHhhCCCeEEeCCC
Q 017886 268 QERQ-DAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSE 316 (364)
Q Consensus 268 ~~RQ-~a~~eLa~~~vD~miVVGGknSSNT~rL~eia~~~~~~t~~Ie~~ 316 (364)
..+| +.++.|.++.+|.+|+.+- .+.=....++-+++.|.|...+++.
T Consensus 42 ~~~q~~~i~~l~~~~vdgiIi~~~-~~~~~~~~l~~~~~~giPvV~~~~~ 90 (302)
T TIGR02637 42 AEGQIEVVNSLIAQKVDAIAISAN-DPDALVPALKKAMKRGIKVVTWDSG 90 (302)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCC-ChHHHHHHHHHHHHCCCEEEEeCCC
Confidence 4555 3455554568999999863 2221234455677788999888864
No 285
>cd03145 GAT1_cyanophycinase Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. This group contains proteins similar to the extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Cyanophycinase is believed to be a serine-type exopeptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow.
Probab=29.17 E-value=75 Score=29.65 Aligned_cols=74 Identities=11% Similarity=0.180 Sum_probs=38.5
Q ss_pred ceEEEEEcCCCCh-HHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHHHHHHHhhhhCCCEEEEEcCCCCchh
Q 017886 218 VKVGIANQTTMLK-GETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNT 296 (364)
Q Consensus 218 ~kv~vvsQTT~~~-~~~~~i~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ~a~~eLa~~~vD~miVVGGknSSNT 296 (364)
.+++++.=..... +.+++..+.+.+ ++. .++.+...-+.+...-.+.++.|. .+|+++|-|| ||
T Consensus 30 ~~i~~iptA~~~~~~~~~~~~~~~~~-----lG~----~~v~~~~~~~~~~a~~~~~~~~l~--~ad~I~~~GG----~~ 94 (217)
T cd03145 30 ARIVVIPAASEEPAEVGEEYRDVFER-----LGA----REVEVLVIDSREAANDPEVVARLR--DADGIFFTGG----DQ 94 (217)
T ss_pred CcEEEEeCCCcChhHHHHHHHHHHHH-----cCC----ceeEEeccCChHHcCCHHHHHHHH--hCCEEEEeCC----cH
Confidence 4788876444332 223334444432 221 122333333333333334445553 6999999998 67
Q ss_pred HHHHHHHHhh
Q 017886 297 SHLQEIAEDR 306 (364)
Q Consensus 297 ~rL~eia~~~ 306 (364)
.+|.+.-++.
T Consensus 95 ~~~~~~l~~t 104 (217)
T cd03145 95 LRITSALGGT 104 (217)
T ss_pred HHHHHHHcCC
Confidence 7777766543
No 286
>PF00919 UPF0004: Uncharacterized protein family UPF0004; InterPro: IPR013848 The methylthiotransferase (MTTase) or miaB-like family is named after the (dimethylallyl)adenosine tRNA MTTase miaB protein, which catalyses a C-H to C-S bond conversion in the methylthiolation of tRNA. A related bacterial enzyme rimO performs a similar methylthiolation, but on a protein substrate. RimO acts on the ribosomal protein S12 and forms a separate MTTase subfamily. The miaB-subfamily includes mammalian CDK5 regulatory subunit-associated proteins and similar proteins in other eukaryotes. Two other subfamilies, yqeV and CDKAL1, are named after a Bacillus subtilis and a human protein, respectively. While yqeV-like proteins are found in bacteria, CDKAL1 subfamily members occur in eukaryotes and in archaebacteria. The likely MTTases from these 4 subfamilies contain an N-terminal MTTase domain, a central radical generating fold and a C-terminal TRAM domain (see PDOC50926 from PROSITEDOC). The core forms a radical SAM fold (or AdoMet radical), containing a cysteine motif CxxxCxxC that binds a [4Fe-4S] cluster [, , ]. A reducing equivalent from the [4Fe-4S]+ cluster is used to cleave S-adenosylmethionine (SAM) to generate methionine and a 5'-deoxyadenosyl radical. The latter is thought to produce a reactive substrate radical that is amenable to sulphur insertion [, ]. The N-terminal MTTase domain contains 3 cysteines that bind a second [4Fe-4S] cluster, in addition to the radical-generating [4Fe-4S] cluster, which could be involved in the thiolation reaction. The C-terminal TRAM domain is not shared with other radical SAM proteins outside the MTTase family. The TRAM domain can bind to RNA substrate and seems to be important for substrate recognition. The tertiary structure of the central radical SAM fold has six beta/alpha motifs resembling a three-quarter TIM barrel core (see PDOC00155 from PROSITEDOC) []. The N-terminal MTTase domain might form an additional [beta/alpha]2 TIM barrel unit []. ; GO: 0003824 catalytic activity, 0051539 4 iron, 4 sulfur cluster binding, 0009451 RNA modification
Probab=29.12 E-value=3.3e+02 Score=22.45 Aligned_cols=39 Identities=8% Similarity=0.104 Sum_probs=28.8
Q ss_pred HHHHHHHHHcCcEEecCCccccccccccCCCEEEEcCCCCCHHHHHHH
Q 017886 68 PTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTL 115 (364)
Q Consensus 68 ~~Vv~~L~~~Gv~~v~~~~~~~~~~~l~~g~~VIIrAHGv~~~v~~~l 115 (364)
..+...|.+.|...++++ .+-|.+||.+=+|..+-.+++
T Consensus 17 e~i~~~l~~~G~~~~~~~---------e~AD~iiiNTC~V~~~Ae~k~ 55 (98)
T PF00919_consen 17 ERIASILQAAGYEIVDDP---------EEADVIIINTCTVRESAEQKS 55 (98)
T ss_pred HHHHHHHHhcCCeeeccc---------ccCCEEEEEcCCCCcHHHHHH
Confidence 356678999999998752 245789999988877655444
No 287
>cd06289 PBP1_MalI_like Ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. This group includes the ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. They are members of the LacI-GalR family of repressor proteins which are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=29.12 E-value=4.2e+02 Score=23.74 Aligned_cols=86 Identities=20% Similarity=0.274 Sum_probs=45.9
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHHH-HHHHhhhhCCCEEEEEcCCCCchhHH
Q 017886 220 VGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQD-AMYKMVEEKVDLILVVGGWNSSNTSH 298 (364)
Q Consensus 220 v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ~-a~~eLa~~~vD~miVVGGknSSNT~r 298 (364)
|+++... ++..-|..+.+-+++... +++ -++.++++ ......|. .++.+.+..+|.+|+.+...+ +. .
T Consensus 2 I~vi~~~-~~~~~~~~~~~g~~~~a~-~~g-----~~~~~~~~--~~~~~~~~~~i~~~~~~~vdgiii~~~~~~-~~-~ 70 (268)
T cd06289 2 IGLVIND-LTNPFFAELAAGLEEVLE-EAG-----YTVFLANS--GEDVERQEQLLSTMLEHGVAGIILCPAAGT-SP-D 70 (268)
T ss_pred EEEEecC-CCcchHHHHHHHHHHHHH-HcC-----CeEEEecC--CCChHHHHHHHHHHHHcCCCEEEEeCCCCc-cH-H
Confidence 4455533 233446666666665322 222 12222211 11223443 344454467999999975322 22 3
Q ss_pred HHHHHHhhCCCeEEeCCC
Q 017886 299 LQEIAEDRGIPSYWIDSE 316 (364)
Q Consensus 299 L~eia~~~~~~t~~Ie~~ 316 (364)
.++.+++.|.|...+++.
T Consensus 71 ~~~~~~~~~ipvV~~~~~ 88 (268)
T cd06289 71 LLKRLAESGIPVVLVARE 88 (268)
T ss_pred HHHHHHhcCCCEEEEecc
Confidence 556677888999988765
No 288
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=28.95 E-value=1.4e+02 Score=26.36 Aligned_cols=38 Identities=21% Similarity=0.317 Sum_probs=32.1
Q ss_pred hCCCEEEEEc-CCCCchhHHHHHHHHhhCCCeEEeCCCC
Q 017886 280 EKVDLILVVG-GWNSSNTSHLQEIAEDRGIPSYWIDSEK 317 (364)
Q Consensus 280 ~~vD~miVVG-GknSSNT~rL~eia~~~~~~t~~Ie~~~ 317 (364)
.+-|++|++- +-+|.++..+++.|++.|.++.-|.+..
T Consensus 100 ~~~Dv~I~iS~SG~t~~~i~~~~~ak~~Ga~vI~IT~~~ 138 (177)
T cd05006 100 QPGDVLIGISTSGNSPNVLKALEAAKERGMKTIALTGRD 138 (177)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 3579999987 4677899999999999999999998753
No 289
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=28.90 E-value=57 Score=31.33 Aligned_cols=29 Identities=14% Similarity=0.393 Sum_probs=24.3
Q ss_pred EEeccCchhHHHHHHHHHHhhCC-CeEEEE
Q 017886 122 IVDTTCPWVSKVWTSVEKHKKGD-YTSIIH 150 (364)
Q Consensus 122 iiDaTCP~V~kv~~~v~~~~~~G-y~iIIi 150 (364)
..|-+|||=+|.|..++.+.+.| .++.++
T Consensus 124 FtDp~CpyC~kl~~~l~~~~~~g~V~v~~i 153 (251)
T PRK11657 124 FADPNCPYCKQFWQQARPWVDSGKVQLRHI 153 (251)
T ss_pred EECCCChhHHHHHHHHHHHhhcCceEEEEE
Confidence 47999999999999999998887 555544
No 290
>cd08186 Fe-ADH8 Iron-containing alcohol dehydrogenase. Type III Iron-containing alcohol dehydrogenases (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. The ADH of hyperthermophilic archaeon Thermococcus hydrothermalis oxidizes a series of primary aliphatic and aromatic alcohols preferentially from C2 to C8 but is also active towards methanol and glycerol and stereospecific for monoterpenes. It was suggested that the type III ADHs in microorganisms are involved in acetaldehyde detoxication rather than in alcohol turnover.
Probab=28.88 E-value=2.7e+02 Score=28.13 Aligned_cols=78 Identities=13% Similarity=0.225 Sum_probs=46.7
Q ss_pred ceEEEEEc-CCCC-hHHHHHHHHHHHHHHhhhccccccccccccccccc-HHHHH-HHHHHHHhhhhCCCEEEEEcCCCC
Q 017886 218 VKVGIANQ-TTML-KGETEEIGKLVEKTMMRKFGVENVNEHFISFNTIC-DATQE-RQDAMYKMVEEKVDLILVVGGWNS 293 (364)
Q Consensus 218 ~kv~vvsQ-TT~~-~~~~~~i~~~l~~~~~~~~~~~~~~~~~~v~nTIC-~AT~~-RQ~a~~eLa~~~vD~miVVGGknS 293 (364)
+|+.+|.- .++. ...++++.+.|++ .+.++.+|+.++ +.|.+ =++.++.+....+|++|-|||=..
T Consensus 27 kr~livtd~~~~~~~g~~~~v~~~L~~----------~gi~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGS~ 96 (383)
T cd08186 27 SKVLLVTGKSAYKKSGAWDKVEPALDE----------HGIEYVLYNKVTPNPTVDQVDEAAKLGREFGAQAVIAIGGGSP 96 (383)
T ss_pred CEEEEEcCccHHhhcChHHHHHHHHHH----------cCCeEEEeCCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCccH
Confidence 47777774 3332 2335677777654 112345666554 22222 223333333346999999999999
Q ss_pred chhHHHHHHHHh
Q 017886 294 SNTSHLQEIAED 305 (364)
Q Consensus 294 SNT~rL~eia~~ 305 (364)
-.+-|.+-+...
T Consensus 97 iD~aK~ia~~~~ 108 (383)
T cd08186 97 IDSAKSAAILLE 108 (383)
T ss_pred HHHHHHHHHHHh
Confidence 999999877643
No 291
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=28.82 E-value=1.1e+02 Score=28.36 Aligned_cols=58 Identities=17% Similarity=0.287 Sum_probs=35.0
Q ss_pred CCCEEEEEcCCCCchhHHHHHHHHhhCCCeEEeCCCCccCCCCcchhhhccchhhhhcccCC----CCCCEEEEEeCCCC
Q 017886 281 KVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLP----KGQITIGITSGAST 356 (364)
Q Consensus 281 ~vD~miVVGGknSSNT~rL~eia~~~~~~t~~Ie~~~eL~~~~~~~~~~~~~~~~~~~~wl~----~~~~~VGITAGAST 356 (364)
..|++|..-+...-| .++++.|+ .+.....+++++. .. -+|| .+.-+||||+|...
T Consensus 70 ~adlViaaT~d~elN-~~i~~~a~-~~~lvn~~d~~~~-~~-----------------f~~Pa~~~~g~l~iaIsT~G~s 129 (202)
T PRK06718 70 DAFLVIAATNDPRVN-EQVKEDLP-ENALFNVITDAES-GN-----------------VVFPSALHRGKLTISVSTDGAS 129 (202)
T ss_pred CceEEEEcCCCHHHH-HHHHHHHH-hCCcEEECCCCcc-Ce-----------------EEEeeEEEcCCeEEEEECCCCC
Confidence 477666554544445 67888884 4554444444332 22 2233 46789999998888
Q ss_pred CH
Q 017886 357 PD 358 (364)
Q Consensus 357 P~ 358 (364)
|-
T Consensus 130 P~ 131 (202)
T PRK06718 130 PK 131 (202)
T ss_pred hH
Confidence 84
No 292
>TIGR02873 spore_ylxY probable sporulation protein, polysaccharide deacetylase family. Members of this protein family are most closely related to TIGR02764, a subset of polysaccharide deacetylase family proteins found in a species if and only if the species forms endospores like those of Bacillus subtilis or Clostridium tetani. This family is likewise restricted to spore-formers, but is not universal among them in having sequences with full-length matches to the model.
Probab=28.55 E-value=1.7e+02 Score=28.47 Aligned_cols=81 Identities=10% Similarity=-0.020 Sum_probs=42.7
Q ss_pred eEEecccccCHHHHHHHHHcCcEEecCCccccccccccCCCEEEEcCCCCCHHHHHHHHh---cC-CcEEeccCchhHHH
Q 017886 58 IWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNN---KN-VQIVDTTCPWVSKV 133 (364)
Q Consensus 58 vy~lG~iIHN~~Vv~~L~~~Gv~~v~~~~~~~~~~~l~~g~~VIIrAHGv~~~v~~~l~~---~g-~~iiDaTCP~V~kv 133 (364)
.|..--=-.|+.+++.++++|..++.= +++ ..|.. +.-+..+.+.+.+ .| +.+.=.+-.-+.-+
T Consensus 179 ~fRpP~G~~n~~~~~~l~~~G~~~v~W-----svd---~~Dw~----~~~~~~i~~~v~~~~~~G~IILmHd~~~T~~aL 246 (268)
T TIGR02873 179 WFAPPSGSFNDNVVQIAADLQMGTIMW-----TVD---TIDWK----NPSPSVMVNRVLSKIHPGAMVLMHPTASSTEGL 246 (268)
T ss_pred EEECCCCCCCHHHHHHHHHCCCeEEEe-----ccC---CCCCC----CCCHHHHHHHHHhcCCCCcEEEEcCCccHHHHH
Confidence 444434467999999999999998751 011 11110 0011122222211 12 22222223345677
Q ss_pred HHHHHHHhhCCCeEEEE
Q 017886 134 WTSVEKHKKGDYTSIIH 150 (364)
Q Consensus 134 ~~~v~~~~~~Gy~iIIi 150 (364)
-.++..+.++||+.+-+
T Consensus 247 ~~iI~~Lk~kGy~fvtl 263 (268)
T TIGR02873 247 EEMITIIKEKGYKIGTI 263 (268)
T ss_pred HHHHHHHHHCCCEEEeH
Confidence 78888888889887643
No 293
>cd06274 PBP1_FruR Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs. Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to members of the type I periplasmic binding protein superfamily. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor
Probab=28.51 E-value=4.5e+02 Score=23.79 Aligned_cols=46 Identities=17% Similarity=0.429 Sum_probs=30.4
Q ss_pred HHH-HHHHHhhhhCCCEEEEEcCCCCchhHHHHHHHHhhCCCeEEeCCCC
Q 017886 269 ERQ-DAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEK 317 (364)
Q Consensus 269 ~RQ-~a~~eLa~~~vD~miVVGGknSSNT~rL~eia~~~~~~t~~Ie~~~ 317 (364)
.+| +.+..|....+|.+++.+...+++. + +.+++.+.|.+.++...
T Consensus 42 ~~~~~~i~~l~~~~vdgiii~~~~~~~~~--~-~~~~~~~ipvV~~~~~~ 88 (264)
T cd06274 42 ETERETVETLIARQVDALIVAGSLPPDDP--Y-YLCQKAGLPVVALDRPG 88 (264)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCCCchHH--H-HHHHhcCCCEEEecCcc
Confidence 444 3444554578999999887544432 3 34567889999997764
No 294
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=28.37 E-value=5.5e+02 Score=24.80 Aligned_cols=123 Identities=13% Similarity=0.111 Sum_probs=69.3
Q ss_pred hHHHHHHHcCCcccccceEEEEeCCCCCcccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHHcCcEEecCCcc
Q 017886 8 DIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEG 87 (364)
Q Consensus 8 ~~~~~~~~~~~~~~~~~mkI~lA~~~GFC~GV~RAi~~a~~~~~~~~~~~vy~lG~iIHN~~Vv~~L~~~Gv~~v~~~~~ 87 (364)
.|++.|.+.|++... +.. -....+...+++..... .....+ ++.+..|+.-+++..+.|+..+.-
T Consensus 26 ~i~~~L~~~Gv~~IE------vG~-P~~~~~~~~~~~~l~~~---~~~~~v--~~~~r~~~~di~~a~~~g~~~i~i--- 90 (262)
T cd07948 26 EIAKALDAFGVDYIE------LTS-PAASPQSRADCEAIAKL---GLKAKI--LTHIRCHMDDARIAVETGVDGVDL--- 90 (262)
T ss_pred HHHHHHHHcCCCEEE------EEC-CCCCHHHHHHHHHHHhC---CCCCcE--EEEecCCHHHHHHHHHcCcCEEEE---
Confidence 577777777764421 111 23344555555554321 112234 555789999999998888876631
Q ss_pred ccccccccCCCEEEEcCCCCCHHH--------HHHHHhcCCcE----Eecc-CchhHHHHHHHHHHhhCCCeEEEEe
Q 017886 88 KKQFDVVNKGDVVVLPAFGAAVEE--------MVTLNNKNVQI----VDTT-CPWVSKVWTSVEKHKKGDYTSIIHG 151 (364)
Q Consensus 88 ~~~~~~l~~g~~VIIrAHGv~~~v--------~~~l~~~g~~i----iDaT-CP~V~kv~~~v~~~~~~Gy~iIIiG 151 (364)
+ ++-.+.-.-..+|-+++. .+.++++|+.| .|++ || ...+.+.++++.+-|-..|.+.
T Consensus 91 ---~--~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~eda~r~~-~~~l~~~~~~~~~~g~~~i~l~ 161 (262)
T cd07948 91 ---V--FGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFSSEDSFRSD-LVDLLRVYRAVDKLGVNRVGIA 161 (262)
T ss_pred ---E--EecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeeCCCC-HHHHHHHHHHHHHcCCCEEEEC
Confidence 0 011111112235655443 35667888877 5666 88 5667788888777665554444
No 295
>PF15608 PELOTA_1: PELOTA RNA binding domain
Probab=28.27 E-value=1.1e+02 Score=25.92 Aligned_cols=38 Identities=24% Similarity=0.400 Sum_probs=31.3
Q ss_pred HHHHhhhhCCCEEEEEcCCCCchhHHHHHHHHhhCCCeE
Q 017886 273 AMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSY 311 (364)
Q Consensus 273 a~~eLa~~~vD~miVVGGknSSNT~rL~eia~~~~~~t~ 311 (364)
+.+-|. .++=-.|.|-.....++.+|..+|++.|.|.-
T Consensus 47 aTRvLL-RRvP~~vLVr~~~~pd~~Hl~~LA~ekgVpVe 84 (100)
T PF15608_consen 47 ATRVLL-RRVPWKVLVRDPDDPDLAHLLLLAEEKGVPVE 84 (100)
T ss_pred HHHHHH-hcCCCEEEECCCCCccHHHHHHHHHHcCCcEE
Confidence 345577 47878888899999999999999999998753
No 296
>TIGR01357 aroB 3-dehydroquinate synthase. This model represents 3-dehydroquinate synthase, the enzyme catalyzing the second of seven steps in the shikimate pathway of chorismate biosynthesis. Chorismate is the last common intermediate in the biosynthesis of all three aromatic amino acids.
Probab=28.26 E-value=2.5e+02 Score=27.83 Aligned_cols=91 Identities=14% Similarity=0.177 Sum_probs=51.2
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHHHHHH-Hhhh---hCCCEEEEEcCCCC
Q 017886 218 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMY-KMVE---EKVDLILVVGGWNS 293 (364)
Q Consensus 218 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ~a~~-eLa~---~~vD~miVVGGknS 293 (364)
+++.+|.-.+......+.+.+.|++ . +.+ ...+.+.+.-++.|.+-=+++. .+.. .+.|++|.|||=..
T Consensus 21 ~~~livtd~~~~~~~~~~v~~~L~~----~-g~~--~~~~~~~~~e~~~~~~~v~~~~~~~~~~~~~r~d~IIavGGGsv 93 (344)
T TIGR01357 21 SKLVIITDETVADLYADKLLEALQA----L-GYN--VLKLTVPDGEESKSLETVQRLYDQLLEAGLDRSSTIIALGGGVV 93 (344)
T ss_pred CeEEEEECCchHHHHHHHHHHHHHh----c-CCc--eeEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCCEEEEEcChHH
Confidence 4677776555444344455555443 1 100 0011233444444433332222 2221 13499999999999
Q ss_pred chhHHHHHHHHhhCCCeEEeCC
Q 017886 294 SNTSHLQEIAEDRGIPSYWIDS 315 (364)
Q Consensus 294 SNT~rL~eia~~~~~~t~~Ie~ 315 (364)
-.+.|.+......+.|-+.|-|
T Consensus 94 ~D~aK~iA~~~~~~~p~i~VPT 115 (344)
T TIGR01357 94 GDLAGFVAATYMRGIRFIQVPT 115 (344)
T ss_pred HHHHHHHHHHHccCCCEEEecC
Confidence 9999988765567888888887
No 297
>cd06307 PBP1_uncharacterized_sugar_binding Periplasmic sugar-binding domain of uncharacterized transport systems. Periplasmic sugar-binding domain of uncharacterized transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. The members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes.
Probab=27.85 E-value=3.2e+02 Score=25.00 Aligned_cols=87 Identities=11% Similarity=0.043 Sum_probs=45.6
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccccc--cHHHHHHH-HHHHHhhhhCCCEEEEEcCCCCchh
Q 017886 220 VGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTI--CDATQERQ-DAMYKMVEEKVDLILVVGGWNSSNT 296 (364)
Q Consensus 220 v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~v~nTI--C~AT~~RQ-~a~~eLa~~~vD~miVVGGknSSNT 296 (364)
++++.-. ++-.-|..+.+.+.+...+. +. .....++. ...-..+| +.+..|.. ++|.+|+++. +++-+
T Consensus 2 ig~v~~~-~~~~~~~~~~~~i~~~~~~~-g~-----~~~~~~~~~~~~~~~~~~~~~i~~~~~-~vdgiii~~~-~~~~~ 72 (275)
T cd06307 2 LGFLLPK-GSNAFYRELAAALEAAAAAF-PD-----ARIRVRIHFVESFDPAALAAALLRLGA-RSDGVALVAP-DHPQV 72 (275)
T ss_pred eEEEeCC-CCChHHHHHHHHHHHHHhhh-hc-----cCceEEEEEccCCCHHHHHHHHHHHHh-cCCEEEEeCC-CcHHH
Confidence 5555433 44566777777776532222 10 01111221 11123445 33344544 8999998753 33333
Q ss_pred HHHHHHHHhhCCCeEEeCC
Q 017886 297 SHLQEIAEDRGIPSYWIDS 315 (364)
Q Consensus 297 ~rL~eia~~~~~~t~~Ie~ 315 (364)
....+-+.+.+.|...+..
T Consensus 73 ~~~i~~~~~~~ipvV~~~~ 91 (275)
T cd06307 73 RAAVARLAAAGVPVVTLVS 91 (275)
T ss_pred HHHHHHHHHCCCcEEEEeC
Confidence 4556666678889887765
No 298
>PRK13914 invasion associated secreted endopeptidase; Provisional
Probab=27.77 E-value=1.3e+02 Score=32.26 Aligned_cols=69 Identities=23% Similarity=0.351 Sum_probs=43.7
Q ss_pred chHHH-HHHHcCCcccccceEEEEeCCCCC-cccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHHcCcEEecC
Q 017886 7 SDIIK-KLKENGFEYTWGNVKVKLAESYGF-CWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPV 84 (364)
Q Consensus 7 ~~~~~-~~~~~~~~~~~~~mkI~lA~~~GF-C~GV~RAi~~a~~~~~~~~~~~vy~lG~iIHN~~Vv~~L~~~Gv~~v~~ 84 (364)
..||+ .++-.|.++.||+. .+.|| |.|.-+ .++.. ++ |+-|..-......|..+ +
T Consensus 367 ~~iv~~A~~~lG~PY~wGG~-----sp~gfDCSGlV~---~vy~~---~G----------I~LPR~s~~Q~~~G~~V-s- 423 (481)
T PRK13914 367 SAIIAEAQKHLGKAYSWGGN-----GPTTFDCSGYTK---YVFAK---AG----------ISLPRTSGAQYASTTRI-S- 423 (481)
T ss_pred HHHHHHHHHHcCCcccCCCC-----CCCCcccHHHHH---HHHHH---cC----------CCCCCChHHHHhcCccc-c-
Confidence 34555 44445999999984 56799 999854 55543 22 44454445555666543 2
Q ss_pred CccccccccccCCCEEEEcC
Q 017886 85 EEGKKQFDVVNKGDVVVLPA 104 (364)
Q Consensus 85 ~~~~~~~~~l~~g~~VIIrA 104 (364)
.+++.+||.|+|..
T Consensus 424 ------~selqpGDLVFF~~ 437 (481)
T PRK13914 424 ------ESQAKPGDLVFFDY 437 (481)
T ss_pred ------cccCCCCCEEEeCC
Confidence 35678899888863
No 299
>COG2454 Uncharacterized conserved protein [Function unknown]
Probab=27.76 E-value=2.9e+02 Score=26.42 Aligned_cols=66 Identities=12% Similarity=0.290 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHhhCC-CCceEEecccc-cCHHHH----HHHHHcCcE----EecCCcc-ccccccccCCCEEEEcC
Q 017886 39 VERAVQIAYEARKQFP-EEKIWITNEII-HNPTVN----KRLEEMAVQ----NIPVEEG-KKQFDVVNKGDVVVLPA 104 (364)
Q Consensus 39 V~RAi~~a~~~~~~~~-~~~vy~lG~iI-HN~~Vv----~~L~~~Gv~----~v~~~~~-~~~~~~l~~g~~VIIrA 104 (364)
+.+|+++..+.+++.. +.-+|.++..+ |.-.+- +.|++.||. .++..+. +..++-+-.+|.+||.+
T Consensus 112 t~~Al~lil~~lk~~~~k~vi~L~d~~vs~SGel~~~i~~~mK~~~I~g~~~lvk~~D~eLk~~e~VaTsD~~IIds 188 (211)
T COG2454 112 TDKALDLLLEFLKDVEPKSVIFLFDAPVSKSGELAGRIEEKMKSLGIPGEASLVKNADFELKELEVVATSDSGIIDS 188 (211)
T ss_pred HHHHHHHHHHHHHHcCCceEEEEeCCCCCccHHHHHHHHHHHHhcCCCceeEeccCcCHHHHhcCceeecCeeeeee
Confidence 5789999999888743 44689999999 655444 344556766 5655431 11222233455555544
No 300
>PF00455 DeoRC: DeoR C terminal sensor domain; InterPro: IPR014036 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism. This family of prokaryotic regulators is named after Escherichia coli deoR, a repressor of the deo operon, which encodes nucleotide and deoxyribonucleotide catabolic enzymes. DeoR also negatively regulates the expression of nupG and tsx, a nucleoside-specific transport protein and a channel-forming protein, respectively. DeoR-like transcription repressors occur in diverse bacteria as regulators of sugar and nucleoside metabolic systems. The effector molecules for deoR-like regulators are generally phosphorylated intermediates of the relevant metabolic pathway. The DNA-binding deoR-type HTH domain occurs usually in the N-terminal part. The C-terminal part can contain an effector-binding domain and/or an oligomerization domain. DeoR occurs as an octamer, whilst glpR and agaR are tetramers. Several operators may be bound simultaneously, which could facilitate DNA looping [, ].
Probab=27.74 E-value=61 Score=28.86 Aligned_cols=63 Identities=17% Similarity=0.269 Sum_probs=47.5
Q ss_pred ccCCCEEEEcCCCCCHHHHHHHHhc-CCcEEeccCchhHHHHHHHHHHhhC-CCeEEEEecCCCceeeeecc
Q 017886 94 VNKGDVVVLPAFGAAVEEMVTLNNK-NVQIVDTTCPWVSKVWTSVEKHKKG-DYTSIIHGKYSHEETVATAS 163 (364)
Q Consensus 94 l~~g~~VIIrAHGv~~~v~~~l~~~-g~~iiDaTCP~V~kv~~~v~~~~~~-Gy~iIIiG~~~HpEv~gi~g 163 (364)
+++|++|+|-+-=....+.+.|..+ ++.|| +. --..+..+.+. +.+|++.|=.-+|+..++.|
T Consensus 17 I~~~~~Ifld~GtT~~~la~~L~~~~~ltVv-Tn------sl~ia~~l~~~~~~~vi~~GG~~~~~~~~~~G 81 (161)
T PF00455_consen 17 IEDGDTIFLDSGTTTLELAKYLPDKKNLTVV-TN------SLPIANELSENPNIEVILLGGEVNPKSLSFVG 81 (161)
T ss_pred CCCCCEEEEECchHHHHHHHHhhcCCceEEE-EC------CHHHHHHHHhcCceEEEEeCCEEEcCCCcEEC
Confidence 3578989888888888889999888 88887 33 33444555554 89999999777777777766
No 301
>PF10096 DUF2334: Uncharacterized protein conserved in bacteria (DUF2334); InterPro: IPR018763 This group of proteins has no known function.
Probab=27.70 E-value=1.2e+02 Score=29.08 Aligned_cols=63 Identities=11% Similarity=0.104 Sum_probs=45.1
Q ss_pred EEEcCCCCCH--------HHHHHHHhcCCcEEeccCch--------------hHHHHHHHHHHhhCCCeEEEEecCCCce
Q 017886 100 VVLPAFGAAV--------EEMVTLNNKNVQIVDTTCPW--------------VSKVWTSVEKHKKGDYTSIIHGKYSHEE 157 (364)
Q Consensus 100 VIIrAHGv~~--------~v~~~l~~~g~~iiDaTCP~--------------V~kv~~~v~~~~~~Gy~iIIiG~~~HpE 157 (364)
-+||-|.|+| ++.+.|.+.|+...=+.=|. -.+..+..+.+..+|+.|+++| ..|.-
T Consensus 2 ~lirleDVsP~~~~~~l~~i~d~l~~~~ipf~v~vIP~~~d~~~~~~~~l~~~~~f~~~L~~~~~~Gg~I~lHG-YtHq~ 80 (243)
T PF10096_consen 2 ALIRLEDVSPFSDLEKLKEIADYLYKYGIPFSVAVIPVYVDPNGGITVNLSDNPEFVEYLRYLQARGGEIVLHG-YTHQY 80 (243)
T ss_pred cEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEecccCCCCcccccchhhHHHHHHHHHHHhcCCEEEEEe-cceec
Confidence 3677788887 56677778887764444443 4577778888889999999999 66766
Q ss_pred eeeecc
Q 017886 158 TVATAS 163 (364)
Q Consensus 158 v~gi~g 163 (364)
..+..|
T Consensus 81 ~~~~sg 86 (243)
T PF10096_consen 81 GNSVSG 86 (243)
T ss_pred CCCccc
Confidence 444443
No 302
>cd08175 G1PDH Glycerol-1-phosphate dehydrogenase (G1PDH) catalyzes the reversible reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in an NADH-dependent manner. Glycerol-1-phosphate dehydrogenase (G1PDH) plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires a Ni++ ion. In Bacillus subtilis, it has been described as AraM gene in L-arabinose (ara) operon. AraM protein forms homodimer. This family is bacteria specific.
Probab=27.60 E-value=2.3e+02 Score=28.15 Aligned_cols=35 Identities=23% Similarity=0.380 Sum_probs=28.8
Q ss_pred hCCCEEEEEcCCCCchhHHHHHHHHhhCCCeEEeCCC
Q 017886 280 EKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSE 316 (364)
Q Consensus 280 ~~vD~miVVGGknSSNT~rL~eia~~~~~~t~~Ie~~ 316 (364)
+++|++|-|||=.+-.+-|.+-.. .+.|-+.|-|-
T Consensus 79 ~~~d~IIaIGGGs~~D~aK~vA~~--~~~p~i~IPTT 113 (348)
T cd08175 79 RDTDLIIAVGSGTINDITKYVSYK--TGIPYISVPTA 113 (348)
T ss_pred ccCCEEEEECCcHHHHHHHHHHHh--cCCCEEEecCc
Confidence 379999999999999999987643 46788888775
No 303
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=27.59 E-value=99 Score=25.20 Aligned_cols=55 Identities=20% Similarity=0.348 Sum_probs=37.5
Q ss_pred cccHHHHH-HHHHHHHhhhhCCCEEEEEc-CCCCchhHHHHHHHHhhCCCeEEeCCCCc
Q 017886 262 TICDATQE-RQDAMYKMVEEKVDLILVVG-GWNSSNTSHLQEIAEDRGIPSYWIDSEKR 318 (364)
Q Consensus 262 TIC~AT~~-RQ~a~~eLa~~~vD~miVVG-GknSSNT~rL~eia~~~~~~t~~Ie~~~e 318 (364)
.....+.. +...+..+ .+-|++|++. +.++..+..+++.+++.|.++..|.+..+
T Consensus 35 ~~~~~~~~~~~~~~~~~--~~~d~vi~is~sg~~~~~~~~~~~ak~~g~~vi~iT~~~~ 91 (131)
T PF01380_consen 35 VISYEAGEFFHGPLENL--DPDDLVIIISYSGETRELIELLRFAKERGAPVILITSNSE 91 (131)
T ss_dssp EEEEEHHHHHTTGGGGC--STTEEEEEEESSSTTHHHHHHHHHHHHTTSEEEEEESSTT
T ss_pred eeccchHHHhhhhcccc--cccceeEeeeccccchhhhhhhHHHHhcCCeEEEEeCCCC
Confidence 34444444 44445555 3579999988 56777777888888888888888876554
No 304
>cd06836 PLPDE_III_ODC_DapDC_like_1 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Uncharacterized Proteins with similarity to Ornithine and Diaminopimelate Decarboxylases. This subfamily contains uncharacterized proteins with similarity to ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC). ODC and DapDC are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. ODC participates in the formation of putrescine by catalyzing the decarboxylation of ornithine, the first step in polyamine biosynthesis. DapDC participates in the last step of lysine biosynthesis, the conversion of meso-2,6-diaminoheptanedioate to L-lysine. Proteins in this subfamily may function as PLP-dependent decarbo
Probab=27.43 E-value=1.6e+02 Score=29.77 Aligned_cols=68 Identities=15% Similarity=0.065 Sum_probs=45.3
Q ss_pred cCHHHHHHHHHcCcEEecCCccccccccc-------cCCCEEEEcCCCCCHHHHHHHHhcCCcE-EeccCchhHHHHHHH
Q 017886 66 HNPTVNKRLEEMAVQNIPVEEGKKQFDVV-------NKGDVVVLPAFGAAVEEMVTLNNKNVQI-VDTTCPWVSKVWTSV 137 (364)
Q Consensus 66 HN~~Vv~~L~~~Gv~~v~~~~~~~~~~~l-------~~g~~VIIrAHGv~~~v~~~l~~~g~~i-iDaTCP~V~kv~~~v 137 (364)
-||.+++.|.+.|..+ |-. +..|+ -+++.+++...+-+++.++.+.+.|+.| +|.-.-+ .++++.+
T Consensus 38 ~~~~il~~l~~~G~g~-Dva----S~~El~~al~~G~~~~~Ii~~gp~K~~~~L~~ai~~gv~i~iDS~~El-~~i~~~a 111 (379)
T cd06836 38 PLVPVLRLLAEAGAGA-EVA----SPGELELALAAGFPPERIVFDSPAKTRAELREALELGVAINIDNFQEL-ERIDALV 111 (379)
T ss_pred CCHHHHHHHHHcCCcE-EEc----CHHHHHHHHHcCCChhhEEEeCCCCCHHHHHHHHHCCCEEEECCHHHH-HHHHHHH
Confidence 4677999999988764 210 11111 1366799999999999999999999855 5554333 3444444
Q ss_pred HH
Q 017886 138 EK 139 (364)
Q Consensus 138 ~~ 139 (364)
++
T Consensus 112 ~~ 113 (379)
T cd06836 112 AE 113 (379)
T ss_pred HH
Confidence 43
No 305
>cd01407 SIR2-fam SIR2 family of proteins includes silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation, where the acetyl group from the lysine epsilon-amino group is transferred to the ADP-ribose moiety of NAD+, producing nicotinamide and the novel metabolite O-acetyl-ADP-ribose. Sir2 proteins, also known as sirtuins, are found in all eukaryotes and many archaea and prokaryotes and have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The oligomerization state of Sir2 appears to be organism-dependent, sometimes occurring as a monomer and sometimes as a multimer.
Probab=27.35 E-value=1.7e+02 Score=27.18 Aligned_cols=57 Identities=25% Similarity=0.304 Sum_probs=35.1
Q ss_pred ccccccccccHHHHHHHHHHHHhhhhCCCEEEEEcCCCC-chhHHHHHHHHhhCCCeEEeCC
Q 017886 255 EHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNS-SNTSHLQEIAEDRGIPSYWIDS 315 (364)
Q Consensus 255 ~~~~v~nTIC~AT~~RQ~a~~eLa~~~vD~miVVGGknS-SNT~rL~eia~~~~~~t~~Ie~ 315 (364)
+++..|+.-=... -+++.+.+. ++|++||||-.-+ .-..+|.+.+++.|.+...|.-
T Consensus 145 P~Vv~fgE~~p~~--~~~a~~~~~--~~Dl~lvlGTSl~V~p~~~l~~~~~~~~~~~i~iN~ 202 (218)
T cd01407 145 PDVVFFGESLPEE--LDEAAEALA--KADLLLVIGTSLQVYPAAGLPLYAPERGAPVVIINL 202 (218)
T ss_pred CCeEECCCCCcHH--HHHHHHHHh--cCCEEEEeCCCcccccHHHHHHHHHHCCCeEEEECC
Confidence 4556565542222 555666664 5899999993211 2234777777777777777754
No 306
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=27.21 E-value=4e+02 Score=25.81 Aligned_cols=93 Identities=10% Similarity=0.088 Sum_probs=58.0
Q ss_pred HHHHHHHHhhCCCCceEEecccccCHHHHHHHHHcCcEEecCCccccccccc-cCCCEEEEcCCCCCHHHHHHH------
Q 017886 43 VQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVV-NKGDVVVLPAFGAAVEEMVTL------ 115 (364)
Q Consensus 43 i~~a~~~~~~~~~~~vy~lG~iIHN~~Vv~~L~~~Gv~~v~~~~~~~~~~~l-~~g~~VIIrAHGv~~~v~~~l------ 115 (364)
-.++...++. +-.|+.+. .|+...+.|.+.|+....+. .++ ...|.||+ +---+..+...+
T Consensus 14 ~~mA~~l~~~--G~~V~v~d---~~~~~~~~~~~~g~~~~~s~------~~~~~~aDvVi~-~vp~~~~~~~vl~~~~~i 81 (296)
T PRK15461 14 SPMASNLLKQ--GHQLQVFD---VNPQAVDALVDKGATPAASP------AQAAAGAEFVIT-MLPNGDLVRSVLFGENGV 81 (296)
T ss_pred HHHHHHHHHC--CCeEEEEc---CCHHHHHHHHHcCCcccCCH------HHHHhcCCEEEE-ecCCHHHHHHHHcCcccH
Confidence 3455555543 23566654 48888999999998766542 222 33454443 322222233222
Q ss_pred ---HhcCCcEEeccCchhHHHHHHHHHHhhCCCeE
Q 017886 116 ---NNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTS 147 (364)
Q Consensus 116 ---~~~g~~iiDaTCP~V~kv~~~v~~~~~~Gy~i 147 (364)
..+|..+||.+--.....++.++.+.+.|...
T Consensus 82 ~~~l~~g~lvid~sT~~p~~~~~l~~~l~~~g~~~ 116 (296)
T PRK15461 82 CEGLSRDALVIDMSTIHPLQTDKLIADMQAKGFSM 116 (296)
T ss_pred hhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCcE
Confidence 13577789999999999999999998888663
No 307
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=27.10 E-value=2.3e+02 Score=28.59 Aligned_cols=101 Identities=19% Similarity=0.227 Sum_probs=60.3
Q ss_pred eEEEEeCCCCCccc---HHHHHHHHHHHHhhCCCCceEEecccccCHHHHHH-HHHcCcEEecCCccccccccccCCCEE
Q 017886 25 VKVKLAESYGFCWG---VERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKR-LEEMAVQNIPVEEGKKQFDVVNKGDVV 100 (364)
Q Consensus 25 mkI~lA~~~GFC~G---V~RAi~~a~~~~~~~~~~~vy~lG~iIHN~~Vv~~-L~~~Gv~~v~~~~~~~~~~~l~~g~~V 100 (364)
|+|.+-.-.|.-.| |.|-..+|.+..+. +-.-+|.-++.+-+ ++-. ++--++...... +.+.+. +.|.|
T Consensus 1 M~V~i~~Dgg~~iGmGHV~R~l~LA~~l~k~-~~~~~fl~k~~~e~--~~~~~~~~f~~~~~~~~---n~ik~~-k~d~l 73 (318)
T COG3980 1 MKVLIRCDGGLEIGMGHVMRTLTLARELEKR-GFACLFLTKQDIEA--IIHKVYEGFKVLEGRGN---NLIKEE-KFDLL 73 (318)
T ss_pred CcEEEEecCCcccCcchhhhHHHHHHHHHhc-CceEEEecccchhh--hhhhhhhhccceeeecc---cccccc-cCCEE
Confidence 55555444555544 88999999877664 23456666655433 1111 111122222211 122233 47899
Q ss_pred EEcCCCCCHHHHHHHH-hcCC--cEEeccCchhHH
Q 017886 101 VLPAFGAAVEEMVTLN-NKNV--QIVDTTCPWVSK 132 (364)
Q Consensus 101 IIrAHGv~~~v~~~l~-~~g~--~iiDaTCP~V~k 132 (364)
||-+-|++.+..+.++ +.|. -++|.-|+.-.+
T Consensus 74 I~Dsygl~~dd~k~ik~e~~~k~l~fDd~~~~~~~ 108 (318)
T COG3980 74 IFDSYGLNADDFKLIKEEAGSKILIFDDENAKSFK 108 (318)
T ss_pred EEeccCCCHHHHHHHHHHhCCcEEEecCCCccchh
Confidence 9999999999999998 5554 458999986443
No 308
>cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=27.09 E-value=4e+02 Score=25.70 Aligned_cols=93 Identities=14% Similarity=0.119 Sum_probs=50.8
Q ss_pred ccHHHHHHHHHHHHhhCCCC-ceEEecccc----------cCH----HHHHHHHHcCcEEecCCccccccccc-cCCCEE
Q 017886 37 WGVERAVQIAYEARKQFPEE-KIWITNEII----------HNP----TVNKRLEEMAVQNIPVEEGKKQFDVV-NKGDVV 100 (364)
Q Consensus 37 ~GV~RAi~~a~~~~~~~~~~-~vy~lG~iI----------HN~----~Vv~~L~~~Gv~~v~~~~~~~~~~~l-~~g~~V 100 (364)
-+.+-+.+.+.+.++.+.+. ++|..|... -.+ .+++..++.|+.+.-...+...+... ..|...
T Consensus 117 ~~~~~~~~~v~~~~~~G~~~iK~~~~g~~~~~~~~~~~~~~~~e~l~~~~~~A~~~g~~v~~H~~~~~~i~~~l~~G~~~ 196 (342)
T cd01299 117 DGVEEVRAAVREQLRRGADQIKIMATGGVLSPGDPPPDTQFSEEELRAIVDEAHKAGLYVAAHAYGAEAIRRAIRAGVDT 196 (342)
T ss_pred cCHHHHHHHHHHHHHhCCCEEEEeccCCcCCCCCCCcccCcCHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCE
Confidence 34455566666666542211 577766321 122 34556677787766432211111111 124333
Q ss_pred EEcCCCCCHHHHHHHHhcCCcEEeccCchhH
Q 017886 101 VLPAFGAAVEEMVTLNNKNVQIVDTTCPWVS 131 (364)
Q Consensus 101 IIrAHGv~~~v~~~l~~~g~~iiDaTCP~V~ 131 (364)
|.=+-.++++.++.++++|+.++ +||.+.
T Consensus 197 i~H~~~~~~~~~~~l~~~g~~~~--~t~~~~ 225 (342)
T cd01299 197 IEHGFLIDDETIELMKEKGIFLV--PTLATY 225 (342)
T ss_pred EeecCCCCHHHHHHHHHCCcEEe--CcHHHH
Confidence 43333368999999999999885 888763
No 309
>COG1737 RpiR Transcriptional regulators [Transcription]
Probab=26.93 E-value=3.2e+02 Score=26.47 Aligned_cols=76 Identities=16% Similarity=0.250 Sum_probs=41.3
Q ss_pred CceEEecccccCHHHH----HHHHHcCcEEecCCcc--c-cccccccCCCEE-EEcCCCCCHHHHHHH---HhcCCcEEe
Q 017886 56 EKIWITNEIIHNPTVN----KRLEEMAVQNIPVEEG--K-KQFDVVNKGDVV-VLPAFGAAVEEMVTL---NNKNVQIVD 124 (364)
Q Consensus 56 ~~vy~lG~iIHN~~Vv----~~L~~~Gv~~v~~~~~--~-~~~~~l~~g~~V-IIrAHGv~~~v~~~l---~~~g~~iiD 124 (364)
++||.+| +=..--|- .+|...|+.+.--.+. . ..+..+.++|.| +|+--|-++++.+.+ +++|.+||=
T Consensus 131 ~rI~~~G-~g~S~~vA~~~~~~l~~ig~~~~~~~d~~~~~~~~~~~~~~Dv~i~iS~sG~t~e~i~~a~~ak~~ga~vIa 209 (281)
T COG1737 131 RRIYFFG-LGSSGLVASDLAYKLMRIGLNVVALSDTHGQLMQLALLTPGDVVIAISFSGYTREIVEAAELAKERGAKVIA 209 (281)
T ss_pred CeEEEEE-echhHHHHHHHHHHHHHcCCceeEecchHHHHHHHHhCCCCCEEEEEeCCCCcHHHHHHHHHHHHCCCcEEE
Confidence 5688888 43333333 3455667665542111 0 123345678875 588889999876554 445555544
Q ss_pred ccCchhHH
Q 017886 125 TTCPWVSK 132 (364)
Q Consensus 125 aTCP~V~k 132 (364)
-|.....-
T Consensus 210 iT~~~~sp 217 (281)
T COG1737 210 ITDSADSP 217 (281)
T ss_pred EcCCCCCc
Confidence 44443333
No 310
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=26.68 E-value=1.2e+02 Score=25.33 Aligned_cols=39 Identities=10% Similarity=0.244 Sum_probs=32.0
Q ss_pred hCCCEEEEEcC-CCCchhHHHHHHHHhhCCCeEEeCCCCc
Q 017886 280 EKVDLILVVGG-WNSSNTSHLQEIAEDRGIPSYWIDSEKR 318 (364)
Q Consensus 280 ~~vD~miVVGG-knSSNT~rL~eia~~~~~~t~~Ie~~~e 318 (364)
.+-|++|+|-- -+|.++...++.|++.|.+++-|.+..+
T Consensus 46 ~~~dl~I~iS~SG~t~~~~~~~~~a~~~g~~vi~iT~~~~ 85 (120)
T cd05710 46 TEKSVVILASHSGNTKETVAAAKFAKEKGATVIGLTDDED 85 (120)
T ss_pred CCCcEEEEEeCCCCChHHHHHHHHHHHcCCeEEEEECCCC
Confidence 35699888875 5788899999999999999998887544
No 311
>TIGR02884 spore_pdaA delta-lactam-biosynthetic de-N-acetylase. Muramic delta-lactam is an unusual constituent of peptidoglycan, found only in bacterial spores in the peptidoglycan wall, or spore cortex. The proteins in this family are PdaA (yfjS), a member of a larger family of polysaccharide deacetylases, and are specificially involved in delta-lactam biosynthesis. PdaA acts immediately after CwlD, an N-acetylmuramoyl-L-alanine amidase and performs a de-N-acetylation. PdaA may also perform the following transpeptidation for lactam ring formation, as heterologous expression in E. coli of CwlD and PdaA together is sufficient for delta-lactam production.
Probab=26.67 E-value=1.4e+02 Score=27.81 Aligned_cols=76 Identities=13% Similarity=0.079 Sum_probs=0.0
Q ss_pred cccchHHHHHHHcCCcccccceEEEEeCCCCCc----ccHHHHHHHHHHHHhhCCCCceEEecc-----cccCHHHHHHH
Q 017886 4 EYTSDIIKKLKENGFEYTWGNVKVKLAESYGFC----WGVERAVQIAYEARKQFPEEKIWITNE-----IIHNPTVNKRL 74 (364)
Q Consensus 4 ~y~~~~~~~~~~~~~~~~~~~mkI~lA~~~GFC----~GV~RAi~~a~~~~~~~~~~~vy~lG~-----iIHN~~Vv~~L 74 (364)
.|...+.+.+++.|+....-++ .+..|. .|...+++.+.+.+. .+.|..+++ +=.-|.+++.|
T Consensus 139 ~~~~~~~~~l~~~Gy~~v~w~v-----~~~Dw~~~~~~~~~~~~~~v~~~~~---~g~IiLlHd~~~~t~~aL~~ii~~l 210 (224)
T TIGR02884 139 VFSERTLAYTKELGYYTVFWSL-----AFKDWKVDEQPGWQYAYKQIMKKIH---PGAILLLHAVSKDNAEALDKIIKDL 210 (224)
T ss_pred CcCHHHHHHHHHcCCcEEeccc-----cCcccCCCCCCCHHHHHHHHHhcCC---CCcEEEEECCCCCHHHHHHHHHHHH
Q ss_pred HHcCcEEecCCccccccccc
Q 017886 75 EEMAVQNIPVEEGKKQFDVV 94 (364)
Q Consensus 75 ~~~Gv~~v~~~~~~~~~~~l 94 (364)
+++|..|+ .++++
T Consensus 211 k~~Gy~fv-------tl~el 223 (224)
T TIGR02884 211 KEQGYTFK-------SLDDL 223 (224)
T ss_pred HHCCCEEE-------EhHHc
No 312
>COG2984 ABC-type uncharacterized transport system, periplasmic component [General function prediction only]
Probab=26.66 E-value=7e+02 Score=25.43 Aligned_cols=179 Identities=15% Similarity=0.125 Sum_probs=94.8
Q ss_pred HHHHHHhcCC---cE-EeccCchhHHHHHHHHHHhhCCCeEEEEecCCCceeeeecccCCc-EEEE---cChhhHHHhhh
Q 017886 111 EMVTLNNKNV---QI-VDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAGK-YIIV---KNMKEAEYVCD 182 (364)
Q Consensus 111 v~~~l~~~g~---~i-iDaTCP~V~kv~~~v~~~~~~Gy~iIIiG~~~HpEv~gi~g~~~~-~~vv---~~~~e~~~~~~ 182 (364)
+.+.|++.|. ++ +...=-...++.+++|++..++-.+|+.. .-|+.+++.++..+ -+|+ .|+.-+..+.+
T Consensus 51 ~~~aLk~~G~~n~~i~~~na~~~~~~a~~iarql~~~~~dviv~i--~tp~Aq~~~s~~~~iPVV~aavtd~v~a~Lv~~ 128 (322)
T COG2984 51 VKEALKDAGYKNVKIDYQNAQGDLGTAAQIARQLVGDKPDVIVAI--ATPAAQALVSATKTIPVVFAAVTDPVGAKLVKS 128 (322)
T ss_pred HHHHHHhcCccCeEEEeecCCCChHHHHHHHHHhhcCCCcEEEec--CCHHHHHHHHhcCCCCEEEEccCchhhccCCcc
Confidence 5666777776 44 44555666777778888877777665544 23444444443321 1111 22222221110
Q ss_pred hh-cCCCCCC--CCChHHHHHHHHHhhhcCCCCCCCCCceEEEEEcCCC--ChHHHHHHHHHHHHHHhhhcccccccccc
Q 017886 183 YI-LGGELNG--SSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTM--LKGETEEIGKLVEKTMMRKFGVENVNEHF 257 (364)
Q Consensus 183 ~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~kv~vvsQTT~--~~~~~~~i~~~l~~~~~~~~~~~~~~~~~ 257 (364)
.- .++..-| +..+.++-.+-++... ++-++++++-+.-. +....+++.+.+++ .+ +
T Consensus 129 ~~~pg~NvTGvsD~~~v~q~i~lik~~~-------Pnak~Igv~Y~p~E~ns~~l~eelk~~A~~-----~G-------l 189 (322)
T COG2984 129 LEQPGGNVTGVSDLLPVAQQIELIKALL-------PNAKSIGVLYNPGEANSVSLVEELKKEARK-----AG-------L 189 (322)
T ss_pred ccCCCCceeecCCcchHHHHHHHHHHhC-------CCCeeEEEEeCCCCcccHHHHHHHHHHHHH-----CC-------C
Confidence 00 0000011 1112222233232211 24478999888764 55556666555543 12 2
Q ss_pred cccccccHHHHHHHHHHHHhhhhCCCEEEEEcCCCCchh-HHHHHHHHhhCCCeE
Q 017886 258 ISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNT-SHLQEIAEDRGIPSY 311 (364)
Q Consensus 258 ~v~nTIC~AT~~RQ~a~~eLa~~~vD~miVVGGknSSNT-~rL~eia~~~~~~t~ 311 (364)
.+.----..+.+=|.+++.|. +++|++++.-+..+-+. .-|.+.+.+.+.|.|
T Consensus 190 ~vve~~v~~~ndi~~a~~~l~-g~~d~i~~p~dn~i~s~~~~l~~~a~~~kiPli 243 (322)
T COG2984 190 EVVEAAVTSVNDIPRAVQALL-GKVDVIYIPTDNLIVSAIESLLQVANKAKIPLI 243 (322)
T ss_pred EEEEEecCcccccHHHHHHhc-CCCcEEEEecchHHHHHHHHHHHHHHHhCCCee
Confidence 222222234456678888897 79999999988766543 467788888888876
No 313
>PRK06830 diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=26.64 E-value=1e+02 Score=32.48 Aligned_cols=50 Identities=22% Similarity=0.386 Sum_probs=36.8
Q ss_pred HHHHHHHHhhhhCCCEEEEEcCCCCchhH-HHHHHHHhhC--CCeEEeCCCCccC
Q 017886 269 ERQDAMYKMVEEKVDLILVVGGWNSSNTS-HLQEIAEDRG--IPSYWIDSEKRIG 320 (364)
Q Consensus 269 ~RQ~a~~eLa~~~vD~miVVGGknSSNT~-rL~eia~~~~--~~t~~Ie~~~eL~ 320 (364)
.+++.+..|-+..+|.+++|||-.|--+- +|.|-+++.| .+...| ++=||
T Consensus 160 ~~~~iv~~L~~~~I~~L~vIGGdgT~~gA~~l~ee~~~~g~~I~VIGI--PKTID 212 (443)
T PRK06830 160 DPEEIVDTLERMNINILFVIGGDGTLRGASAIAEEIERRGLKISVIGI--PKTID 212 (443)
T ss_pred hHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHHhCCCceEEEe--ccccC
Confidence 56677777766689999999999998766 8888887777 444444 44444
No 314
>PRK09526 lacI lac repressor; Reviewed
Probab=26.62 E-value=4.2e+02 Score=25.20 Aligned_cols=126 Identities=11% Similarity=0.211 Sum_probs=60.7
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHHHHHHHhhhhCCCEEEEEcCCCCchhH
Q 017886 218 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTS 297 (364)
Q Consensus 218 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ~a~~eLa~~~vD~miVVGGknSSNT~ 297 (364)
..|+++..+ ++-..|..+...+.+...+. +-++.++++--+....-++.+..|....+|.+|+.+..++....
T Consensus 64 ~~Igvv~~~-~~~~~~~~~~~gi~~~a~~~------g~~~~i~~~~~~~~~~~~~~l~~l~~~~vdGiii~~~~~~~~~~ 136 (342)
T PRK09526 64 LTIGLATTS-LALHAPSQIAAAIKSRADQL------GYSVVISMVERSGVEACQAAVNELLAQRVSGVIINVPLEDADAE 136 (342)
T ss_pred ceEEEEeCC-CCcccHHHHHHHHHHHHHHC------CCEEEEEeCCCChHHHHHHHHHHHHhcCCCEEEEecCCCcchHH
Confidence 468888654 33334556666665532222 12233332222221222345666665789999997554443333
Q ss_pred HHHHHHHhhCCCeEEeCCCCccCCCCcchhhh-ccchhhhhcccC-CCCCCEEEEEeCCC
Q 017886 298 HLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKL-MHGELVEKENWL-PKGQITIGITSGAS 355 (364)
Q Consensus 298 rL~eia~~~~~~t~~Ie~~~eL~~~~~~~~~~-~~~~~~~~~~wl-~~~~~~VGITAGAS 355 (364)
.|.+ +..+.|..+++.....+. ..+.... ..+.. .-++| ..|.++|++-+|..
T Consensus 137 ~~~~--~~~~iPvV~~d~~~~~~~-~~V~~d~~~~~~~--a~~~L~~~G~~~I~~l~g~~ 191 (342)
T PRK09526 137 KIVA--DCADVPCLFLDVSPQSPV-NSVSFDPEDGTRL--GVEHLVELGHQRIALLAGPE 191 (342)
T ss_pred HHHh--hcCCCCEEEEeccCCCCC-CEEEECcHHHHHH--HHHHHHHCCCCeEEEEeCCC
Confidence 3332 234789888876422111 0011111 11111 11222 13788999988743
No 315
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=26.54 E-value=1.1e+02 Score=24.77 Aligned_cols=19 Identities=21% Similarity=0.501 Sum_probs=13.1
Q ss_pred CEEEEEcCCC-CchhHHHHH
Q 017886 283 DLILVVGGWN-SSNTSHLQE 301 (364)
Q Consensus 283 D~miVVGGkn-SSNT~rL~e 301 (364)
+..+|+||.+ |.+-..+.+
T Consensus 81 ~~~iv~GG~~~t~~~~~~l~ 100 (121)
T PF02310_consen 81 NIPIVVGGPHATADPEEILR 100 (121)
T ss_dssp TSEEEEEESSSGHHHHHHHH
T ss_pred CCEEEEECCchhcChHHHhc
Confidence 7788888877 656555443
No 316
>COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism]
Probab=26.53 E-value=6e+02 Score=26.06 Aligned_cols=65 Identities=14% Similarity=-0.009 Sum_probs=42.8
Q ss_pred ceEEEEEcCC-----CChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHHHHHHHhhhhCCCEEEEEcCCC
Q 017886 218 VKVGIANQTT-----MLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWN 292 (364)
Q Consensus 218 ~kv~vvsQTT-----~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ~a~~eLa~~~vD~miVVGGkn 292 (364)
..+++.+|.| .+.+++++|.+..++. .. + --.+--+++|-.+ -=+.++++++ .-||.+-|=|.|+
T Consensus 132 ~~~~~e~~~te~GtVy~l~el~~i~~~~k~~---~l-~-LHmDGAR~~nA~v----alg~~~~~~~-~~~D~v~~~~tK~ 201 (342)
T COG2008 132 PLAVLENTATEGGTVYPLDELEAISAVCKEH---GL-P-LHMDGARLANALV----ALGVALKTIK-SYVDSVSFCLTKG 201 (342)
T ss_pred ceEEEeeccCCCceecCHHHHHHHHHHHHHh---CC-c-eeechHHHHHHHH----HcCCCHHHHH-hhCCEEEEecccC
Confidence 4789999999 8899999999988762 11 1 0011234444332 2237888887 5799987766665
No 317
>cd06325 PBP1_ABC_uncharacterized_transporter Type I periplasmic ligand-binding domain of uncharacterized ABC-type transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This group includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); its ligand specificity has not been determined experimentally.
Probab=26.36 E-value=3.8e+02 Score=24.39 Aligned_cols=88 Identities=18% Similarity=0.203 Sum_probs=46.4
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHHHhhhccccc-ccccccccccccHHHHHHHHHHHHhhhhCCCEEEEEcCCCCchhHH
Q 017886 220 VGIANQTTMLKGETEEIGKLVEKTMMRKFGVEN-VNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSH 298 (364)
Q Consensus 220 v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~-~~~~~~v~nTIC~AT~~RQ~a~~eLa~~~vD~miVVGGknSSNT~r 298 (364)
|+++.- ++-.-|..+++-+.+.+.+. +... ..-++.+.|+--..+.. ++.++.|....+|.+|+.+. +++..
T Consensus 2 igv~~~--~~~~~~~~~~~gi~~~~~~~-g~~~g~~v~l~~~~~~~~~~~~-~~~~~~l~~~~vd~iI~~~~---~~~~~ 74 (281)
T cd06325 2 VGILQL--VEHPALDAARKGFKDGLKEA-GYKEGKNVKIDYQNAQGDQSNL-PTIARKFVADKPDLIVAIAT---PAAQA 74 (281)
T ss_pred eEEecC--CCCcchHHHHHHHHHHHHHh-CccCCceEEEEEecCCCCHHHH-HHHHHHHHhcCCCEEEEcCc---HHHHH
Confidence 555552 55556777777776654433 1100 00123344443333333 34455565578999999864 23333
Q ss_pred HHHHHHhhCCCeEEeCCC
Q 017886 299 LQEIAEDRGIPSYWIDSE 316 (364)
Q Consensus 299 L~eia~~~~~~t~~Ie~~ 316 (364)
+. .+..+.|..++...
T Consensus 75 ~~--~~~~~iPvV~~~~~ 90 (281)
T cd06325 75 AA--NATKDIPIVFTAVT 90 (281)
T ss_pred HH--HcCCCCCEEEEecC
Confidence 32 44567888888643
No 318
>PF01513 NAD_kinase: ATP-NAD kinase; InterPro: IPR002504 Members of this family are ATP-NAD kinases 2.7.1.23 from EC. The enzymes catalyse the phosphorylation of NAD to NADP utilizing ATP and other nucleoside triphosphates as well as inorganic polyphosphate as a source of phosphorus.; GO: 0003951 NAD+ kinase activity, 0008152 metabolic process; PDB: 1U0T_B 1U0R_D 1Y3H_A 1Y3I_A 3AFO_B 1YT5_B 2AN1_A 2I2A_A 3V8P_A 2I1W_A ....
Probab=26.35 E-value=62 Score=31.39 Aligned_cols=31 Identities=39% Similarity=0.473 Sum_probs=19.0
Q ss_pred hCCCEEEEEcCCCCchhHHHHHHHHhh---CCCeEEeCC
Q 017886 280 EKVDLILVVGGWNSSNTSHLQEIAEDR---GIPSYWIDS 315 (364)
Q Consensus 280 ~~vD~miVVGGknSSNT~rL~eia~~~---~~~t~~Ie~ 315 (364)
..+|++|++||-. -+...++.. ++|.+-|..
T Consensus 75 ~~~D~ii~lGGDG-----T~L~~~~~~~~~~~Pilgin~ 108 (285)
T PF01513_consen 75 EGVDLIIVLGGDG-----TFLRAARLFGDYDIPILGINT 108 (285)
T ss_dssp CCSSEEEEEESHH-----HHHHHHHHCTTST-EEEEEES
T ss_pred cCCCEEEEECCCH-----HHHHHHHHhccCCCcEEeecC
Confidence 6899999999963 234455443 345554443
No 319
>cd06373 PBP1_NPR_like Ligand binding domain of natriuretic peptide receptor (NPR) family. Ligand binding domain of natriuretic peptide receptor (NPR) family which consists of three different subtypes: type A natriuretic peptide receptor (NPR-A, or GC-A), type B natriuretic peptide receptors (NPR-B, or GC-B), and type C natriuretic peptide receptor (NPR-C). There are three types of natriuretic peptide (NP) ligands specific to the receptors: atrial NP (ANP), brain or B-type NP (BNP), and C-type NP (CNP). The NP family is thought to have arisen through gene duplication during evolution and plays an essential role in cardiovascular and body fluid homeostasis. ANP and BNP bind mainly to NPR-A, while CNP binds specifically to NPR-B. Both NPR-A and NPR-B have guanylyl cyclase catalytic activity and produces intracellular secondary messenger cGMP in response to peptide-ligand binding. Consequently, the NPR-A activation results in vasodilation and inhibition of vascular smooth muscle cell proli
Probab=26.21 E-value=1e+02 Score=30.58 Aligned_cols=54 Identities=9% Similarity=0.094 Sum_probs=37.3
Q ss_pred ccccccccc----HHHHHHHHHHHHhhhhCCCEEEEEcCCCCchhHHHHHHHHhhCCCeE
Q 017886 256 HFISFNTIC----DATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSY 311 (364)
Q Consensus 256 ~~~v~nTIC----~AT~~RQ~a~~eLa~~~vD~miVVGGknSSNT~rL~eia~~~~~~t~ 311 (364)
++.+.||-| .....=+.+.+.+.+ -.+..|||...|+-+.-...+|...+.|.+
T Consensus 44 ~~~~~D~~~~~~~~~~~a~~~a~~~~~~--~~v~aiiGp~~S~~~~av~~~~~~~~ip~I 101 (396)
T cd06373 44 TLVFEDSECKCGCSESEAPLVAVDLYFQ--HKPDAFLGPGCEYAAAPVARFAAHWNVPVL 101 (396)
T ss_pred EEEEecCccccccchhhhHHHHHHHHhc--cCCeEEECCCccchhHHHHHHHhcCCCceE
Confidence 455778877 333322334444432 257778999999999999999999888754
No 320
>TIGR03882 cyclo_dehyd_2 bacteriocin biosynthesis cyclodehydratase domain. This model describes a ThiF-like domain of a fusion protein found in clusters associated with the production of TOMMs (thiazole/oxazole-modified microcins), small bacteriocins with characteristic heterocycle modifications. This domain is presumed to act as a cyclodehydratase, as do members of the SagC family modeled by TIGR03603.
Probab=26.03 E-value=2.1e+02 Score=26.39 Aligned_cols=77 Identities=18% Similarity=0.227 Sum_probs=51.8
Q ss_pred HHHHHHHHcCcEEecCCcccc----------------ccccccCCCEEEEcCCCC-CHH-HHHHHHhcCCcEEeccCchh
Q 017886 69 TVNKRLEEMAVQNIPVEEGKK----------------QFDVVNKGDVVVLPAFGA-AVE-EMVTLNNKNVQIVDTTCPWV 130 (364)
Q Consensus 69 ~Vv~~L~~~Gv~~v~~~~~~~----------------~~~~l~~g~~VIIrAHGv-~~~-v~~~l~~~g~~iiDaTCP~V 130 (364)
+++.+|.++|+..-.... .. ....+ ...+|-|+.||. +.+ ....|...|+.++.
T Consensus 63 ~~L~~L~~~G~l~~~~~~-~~~~~~~f~~~~g~~~~~a~~~l-~~~~V~V~~~G~~~~~~l~~aLaa~Gv~~~~------ 134 (193)
T TIGR03882 63 YALDRLERRGYLVEDAPE-LPPAAAAFWSGLGVDPAAALERL-RQLTVTVLSFGEGGAAALAAALAAAGIRIAP------ 134 (193)
T ss_pred HHHHHHHHCCCEeccCCC-CCHHHHHHHHHcCCCHHHHHHHH-hcCcEEEEecCCCcHHHHHHHHHHcCCCccC------
Confidence 678889999987643210 00 01111 134788999995 556 88889999999986
Q ss_pred HHHHHHHHHHhhCCCeEEEEecCCCceeeeecc
Q 017886 131 SKVWTSVEKHKKGDYTSIIHGKYSHEETVATAS 163 (364)
Q Consensus 131 ~kv~~~v~~~~~~Gy~iIIiG~~~HpEv~gi~g 163 (364)
.+.+-+||+.=|..+||...++.
T Consensus 135 ----------~~a~l~vVl~~Dyl~p~L~~~n~ 157 (193)
T TIGR03882 135 ----------SEADLTVVLTDDYLDPELAAINQ 157 (193)
T ss_pred ----------CCCCEEEEEeCCCCChHHHHHHH
Confidence 23456777777888888877754
No 321
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=25.92 E-value=70 Score=33.01 Aligned_cols=41 Identities=12% Similarity=0.269 Sum_probs=30.5
Q ss_pred hCCCEEEEEcC-CCCchhHHHHHHHHhhCCCeEEeCCCCccC
Q 017886 280 EKVDLILVVGG-WNSSNTSHLQEIAEDRGIPSYWIDSEKRIG 320 (364)
Q Consensus 280 ~~vD~miVVGG-knSSNT~rL~eia~~~~~~t~~Ie~~~eL~ 320 (364)
.+.|++|||.+ +-+.|-..|+.-+++.|++.|+|-|--|.|
T Consensus 113 ~~yD~fiii~s~rf~~ndv~La~~i~~~gK~fyfVRTKvD~D 154 (376)
T PF05049_consen 113 YRYDFFIIISSERFTENDVQLAKEIQRMGKKFYFVRTKVDSD 154 (376)
T ss_dssp GG-SEEEEEESSS--HHHHHHHHHHHHTT-EEEEEE--HHHH
T ss_pred cccCEEEEEeCCCCchhhHHHHHHHHHcCCcEEEEEeccccc
Confidence 47999987766 899999999999999999999999877653
No 322
>cd06381 PBP1_iGluR_delta_like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of an orphan family of delta receptors, GluRdelta1 and GluRdelta2. This CD represents the N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of an orphan family of delta receptors, GluRdelta1 and GluRdelta2. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Although the delta receptors are a member of the ionotropic glutamate receptor family, they cannot be activated by AMPA, kainate, NMDA, glutamate, or any other ligands. Phylogenetic analysis shows that both GluRdelta1 and GluRalpha2 are more homologous to non-NMDA receptors. G
Probab=25.86 E-value=79 Score=31.73 Aligned_cols=55 Identities=18% Similarity=0.311 Sum_probs=42.0
Q ss_pred ccccccccHHHHHHHHHHHHhhhhCCCEEEEEcCCCCchhHHHHHHHHhhCCCeEEeC
Q 017886 257 FISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWID 314 (364)
Q Consensus 257 ~~v~nTIC~AT~~RQ~a~~eLa~~~vD~miVVGGknSSNT~rL~eia~~~~~~t~~Ie 314 (364)
+..+++.++..+-=+ ++.+|. .+ .+.-|+|...|+++..+..+|.+.+.|-+...
T Consensus 39 ~v~~dd~~d~~~a~~-~~c~Li-~~-gV~AI~G~~~s~~~~av~~i~~~~~IP~Is~~ 93 (363)
T cd06381 39 SISFIDLNNHFDAVQ-EACDLM-NQ-GILALVTSTGCASAIALQSLTDAMHIPHLFIQ 93 (363)
T ss_pred eeEeecCCChHHHHH-HHHHHH-hc-CcEEEEecCChhHHHHHHHHhhCCCCCEEEee
Confidence 345677777765544 444555 45 89999999999999999999999988876543
No 323
>cd06368 PBP1_iGluR_non_NMDA_like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the non-NMDA (N-methyl-d-asparate) subtypes of ionotropic glutamate receptors. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the non-NMDA (N-methyl-d-asparate) subtypes of ionotropic glutamate receptors. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Glutamate mediates the majority of excitatory synaptic transmission in the central nervous system via two broad classes of ionotropic receptors, characterized by their response to glutamate agonists: N-methyl-d -aspartate (NMDA) and non-NMDA receptors. NMDA receptors
Probab=25.81 E-value=1.2e+02 Score=28.64 Aligned_cols=49 Identities=16% Similarity=0.203 Sum_probs=35.5
Q ss_pred cHHHHHHHHHHHHhhhhCCCEEEEEcCCCCchhHHHHHHHHhhCCCeEEeCC
Q 017886 264 CDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDS 315 (364)
Q Consensus 264 C~AT~~RQ~a~~eLa~~~vD~miVVGGknSSNT~rL~eia~~~~~~t~~Ie~ 315 (364)
|.+..-. .++.+|. . -.+..|||+..|+.+.-+..++.+.+.|-+....
T Consensus 46 ~~~~~a~-~~a~~li-~-~~V~aiiG~~~S~~~~av~~i~~~~~ip~is~~~ 94 (324)
T cd06368 46 NDSFELT-NKACDLL-S-QGVAAIFGPSSSSSANTVQSICDALEIPHITTSW 94 (324)
T ss_pred CChHHHH-HHHHHHH-h-cCcEEEECCCCHHHHHHHHHHHhccCCCcEEecC
Confidence 5554443 4455565 3 3677889999999999999999999988765433
No 324
>cd08193 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. 5-hydroxyvalerate dehydrogenase (HVD) is an iron-containing (type III) NAD-dependent alcohol dehydrogenase. It plays a role in the cyclopentanol metabolism biochemical pathway. It catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. This cyclopentanol (cpn) degradation pathway is present in some bacteria which can use cyclopentanol as sole carbon source. In Comamonas sp. strain NCIMB 9872, this enzyme is encoded by the CpnD gene.
Probab=25.80 E-value=3.1e+02 Score=27.52 Aligned_cols=77 Identities=16% Similarity=0.184 Sum_probs=45.0
Q ss_pred ceEEEEEcCCCChH-HHHHHHHHHHHHHhhhccccccccccccccc-ccHHHHHHHH-HHHHhhhhCCCEEEEEcCCCCc
Q 017886 218 VKVGIANQTTMLKG-ETEEIGKLVEKTMMRKFGVENVNEHFISFNT-ICDATQERQD-AMYKMVEEKVDLILVVGGWNSS 294 (364)
Q Consensus 218 ~kv~vvsQTT~~~~-~~~~i~~~l~~~~~~~~~~~~~~~~~~v~nT-IC~AT~~RQ~-a~~eLa~~~vD~miVVGGknSS 294 (364)
+++.+|...++... .++++.+.|++ . +.++.+|+. --+.|.+-=+ +++.+...++|++|=|||=..-
T Consensus 27 ~~~livt~~~~~~~~~~~~v~~~L~~----~------~~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGs~i 96 (376)
T cd08193 27 KRVLVVTDPGILKAGLIDPLLASLEA----A------GIEVTVFDDVEADPPEAVVEAAVEAARAAGADGVIGFGGGSSM 96 (376)
T ss_pred CeEEEEcCcchhhCccHHHHHHHHHH----c------CCeEEEECCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCchHH
Confidence 58888887664333 46777666653 1 112333332 1223333222 2222223579999999999999
Q ss_pred hhHHHHHHHH
Q 017886 295 NTSHLQEIAE 304 (364)
Q Consensus 295 NT~rL~eia~ 304 (364)
.+-|.+-+.-
T Consensus 97 D~aK~ia~~~ 106 (376)
T cd08193 97 DVAKLVAVLA 106 (376)
T ss_pred HHHHHHHHHH
Confidence 9999876654
No 325
>cd06290 PBP1_LacI_like_9 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=25.74 E-value=4.9e+02 Score=23.46 Aligned_cols=84 Identities=18% Similarity=0.211 Sum_probs=45.2
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHHHH-HHHhhhhCCCEEEEEcCCCCchhHH
Q 017886 220 VGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDA-MYKMVEEKVDLILVVGGWNSSNTSH 298 (364)
Q Consensus 220 v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ~a-~~eLa~~~vD~miVVGGknSSNT~r 298 (364)
++++... ++-.-|.++..-+.....+. + -.+.++++ .....+|.. +..|....+|.+|+.+...++..
T Consensus 2 i~vi~~~-~~~~~~~~~~~gi~~~~~~~-g-----y~~~~~~~--~~~~~~~~~~i~~l~~~~~dgiii~~~~~~~~~-- 70 (265)
T cd06290 2 IGVLTQD-FASPFYGRILKGMERGLNGS-G-----YSPIIATG--HWNQSRELEALELLKSRRVDALILLGGDLPEEE-- 70 (265)
T ss_pred EEEEECC-CCCchHHHHHHHHHHHHHHC-C-----CEEEEEeC--CCCHHHHHHHHHHHHHCCCCEEEEeCCCCChHH--
Confidence 4455443 23345666666665432222 1 22333333 233456644 44455567999999987655433
Q ss_pred HHHHHHhhCCCeEEeCCC
Q 017886 299 LQEIAEDRGIPSYWIDSE 316 (364)
Q Consensus 299 L~eia~~~~~~t~~Ie~~ 316 (364)
+..+ ..+.|...|...
T Consensus 71 ~~~~--~~~iPvV~i~~~ 86 (265)
T cd06290 71 ILAL--AEEIPVLAVGRR 86 (265)
T ss_pred HHHH--hcCCCEEEECCC
Confidence 3233 247899999874
No 326
>PF04392 ABC_sub_bind: ABC transporter substrate binding protein; InterPro: IPR007487 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. This family contains many hypothetical proteins and some ABC transporter substrate binding proteins.; PDB: 3LFT_A 3LKV_A.
Probab=25.62 E-value=79 Score=30.40 Aligned_cols=47 Identities=21% Similarity=0.348 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHhhhhCCCEEEEEcCC-CCchhHHHHHHHHhhCCCeEEe
Q 017886 266 ATQERQDAMYKMVEEKVDLILVVGGW-NSSNTSHLQEIAEDRGIPSYWI 313 (364)
Q Consensus 266 AT~~RQ~a~~eLa~~~vD~miVVGGk-nSSNT~rL~eia~~~~~~t~~I 313 (364)
.+.+=+.++..|. +++|++++..+. -.+|...+.+.+.+.+.|+|-.
T Consensus 170 ~~~~~~~~~~~l~-~~~da~~~~~~~~~~~~~~~i~~~~~~~~iPv~~~ 217 (294)
T PF04392_consen 170 SSEDLEQALEALA-EKVDALYLLPDNLVDSNFEAILQLANEAKIPVFGS 217 (294)
T ss_dssp SGGGHHHHHHHHC-TT-SEEEE-S-HHHHHTHHHHHHHCCCTT--EEES
T ss_pred cHhHHHHHHHHhh-ccCCEEEEECCcchHhHHHHHHHHHHhcCCCEEEC
Confidence 3455567888887 689999887652 2344556888888888888853
No 327
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=25.48 E-value=92 Score=33.10 Aligned_cols=68 Identities=12% Similarity=0.199 Sum_probs=48.5
Q ss_pred CCEEEEcCCCCCHHHHHHHHhcCCcE--EeccCchhHHHHHHHHHHhhCCCeEEEEecCCCceeeeecccCC-cEEEEc
Q 017886 97 GDVVVLPAFGAAVEEMVTLNNKNVQI--VDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAG-KYIIVK 172 (364)
Q Consensus 97 g~~VIIrAHGv~~~v~~~l~~~g~~i--iDaTCP~V~kv~~~v~~~~~~Gy~iIIiG~~~HpEv~gi~g~~~-~~~vv~ 172 (364)
+.++|+-.--+...+.+.|+++|..+ ||.- .+.++++.+.|+. +++||..+||+---.|... +++++.
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d-------~~~~~~~~~~g~~-~i~GD~~~~~~L~~a~i~~a~~viv~ 488 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIETS-------RTRVDELRERGIR-AVLGNAANEEIMQLAHLDCARWLLLT 488 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCCCCEEEEECC-------HHHHHHHHHCCCe-EEEcCCCCHHHHHhcCccccCEEEEE
Confidence 56788888888999999999988655 6643 3445666667876 6799999999864444332 445554
No 328
>TIGR00290 MJ0570_dom MJ0570-related uncharacterized domain. Proteins with this uncharacterized domain include two apparent ortholog families in the Archaea, one of which is universal among the first four completed archaeal genomes, and YLR143W, a much longer protein from Saccharomyces cerevisiae. The domain comprises the full length of the archaeal proteins and the first third of the yeast protein.
Probab=25.47 E-value=1.9e+02 Score=27.69 Aligned_cols=52 Identities=10% Similarity=0.051 Sum_probs=39.0
Q ss_pred EcCCCCCHHHH-HHHHhcCCcEEe--ccCchhHHHHHHHHHHhhCCCeEEEEecC
Q 017886 102 LPAFGAAVEEM-VTLNNKNVQIVD--TTCPWVSKVWTSVEKHKKGDYTSIIHGKY 153 (364)
Q Consensus 102 IrAHGv~~~v~-~~l~~~g~~iiD--aTCP~V~kv~~~v~~~~~~Gy~iIIiG~~ 153 (364)
...|+++.+.. .+++..|+.++- ..|+.-..+.+..+.+.+-|...++.|+-
T Consensus 40 ~~~H~~~~~~~~~qA~algipl~~~~~~~~~e~~~e~l~~~l~~~gv~~vv~GdI 94 (223)
T TIGR00290 40 YMFHGVNAHLTDLQAESIGIPLIKLYTEGTEEDEVEELKGILHTLDVEAVVFGAI 94 (223)
T ss_pred ccccccCHHHHHHHHHHcCCCeEEeecCCCccHHHHHHHHHHHHcCCCEEEECCc
Confidence 47799999866 567779998765 77776666666666666668888888864
No 329
>PRK11337 DNA-binding transcriptional repressor RpiR; Provisional
Probab=25.37 E-value=1.6e+02 Score=28.26 Aligned_cols=55 Identities=16% Similarity=0.132 Sum_probs=39.0
Q ss_pred ccHHHHHHHHHHHHhhhhCCCEEEEEcC-CCCchhHHHHHHHHhhCCCeEEeCCCCc
Q 017886 263 ICDATQERQDAMYKMVEEKVDLILVVGG-WNSSNTSHLQEIAEDRGIPSYWIDSEKR 318 (364)
Q Consensus 263 IC~AT~~RQ~a~~eLa~~~vD~miVVGG-knSSNT~rL~eia~~~~~~t~~Ie~~~e 318 (364)
.|.....-+.....+. .+-|++|++.- .++.++..+++.|++.|.++..|.+-.+
T Consensus 170 ~~~~d~~~~~~~~~~~-~~~Dl~I~iS~sG~t~~~~~~~~~ak~~g~~ii~IT~~~~ 225 (292)
T PRK11337 170 QAYDDAHIMLMSAALL-QEGDVVLVVSHSGRTSDVIEAVELAKKNGAKIICITNSYH 225 (292)
T ss_pred EEcCCHHHHHHHHhcC-CCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 3443333343333455 46799888875 4677899999999999999999988654
No 330
>KOG2947 consensus Carbohydrate kinase [Carbohydrate transport and metabolism]
Probab=25.24 E-value=84 Score=31.11 Aligned_cols=64 Identities=13% Similarity=0.198 Sum_probs=40.0
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHHHHHHHhhhhCCCEEEEE
Q 017886 216 DLVKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVV 288 (364)
Q Consensus 216 ~~~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ~a~~eLa~~~vD~miVV 288 (364)
++.+++++.=---+..+.-+++..+... ..+.+++ ..+++ --.-.++-+++.+|+ ..||.++|=
T Consensus 129 dl~qy~WihfE~Rnp~etlkM~~~I~~~-N~r~pe~---qrI~v----Svd~en~req~~~l~-am~DyVf~s 192 (308)
T KOG2947|consen 129 DLTQYGWIHFEARNPSETLKMLQRIDAH-NTRQPEE---QRIRV----SVDVENPREQLFQLF-AMCDYVFVS 192 (308)
T ss_pred ccceeeeEEEecCChHHHHHHHHHHHHh-hcCCCcc---ceEEE----EEEecCcHHHHHHHh-hcccEEEEE
Confidence 3467888887777777777887777641 2221110 11111 112456788899998 699999984
No 331
>TIGR02144 LysX_arch Lysine biosynthesis enzyme LysX. The family of proteins found in this equivalog include the characterized LysX from Thermus thermophilus which is part of a well-organized lysine biosynthesis gene cluster. LysX is believed to carry out an ATP-dependent acylation of the amino group of alpha-aminoadipate in the prokaryotic version of the fungal AAA lysine biosynthesis pathway. No species having a sequence in this equivalog contains the elements of the more common diaminopimelate lysine biosythesis pathway, and none has been shown to be a lysine auxotroph. These sequences have mainly recieved the name of the related enzyme, "ribosomal protein S6 modification protein RimK". RimK has been characterized in E. coli, and acts by ATP-dependent condensation of S6 with glutamate residues.
Probab=25.22 E-value=1.9e+02 Score=27.08 Aligned_cols=59 Identities=15% Similarity=0.196 Sum_probs=36.5
Q ss_pred cCHHHHHHHHHcCcEEec--CCccccccc----cccCCCEEEEc--CCCCCHHHHHHHHhcCCcEEe
Q 017886 66 HNPTVNKRLEEMAVQNIP--VEEGKKQFD----VVNKGDVVVLP--AFGAAVEEMVTLNNKNVQIVD 124 (364)
Q Consensus 66 HN~~Vv~~L~~~Gv~~v~--~~~~~~~~~----~l~~g~~VIIr--AHGv~~~v~~~l~~~g~~iiD 124 (364)
+.+.+.+.|+++|+.+.- ..+..-.++ ++.+-|.|++| .|+........++..|+.++.
T Consensus 11 ~~~~l~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~r~~~~~~~~~~~~~le~~g~~~~n 77 (280)
T TIGR02144 11 DEKMLIEELEKLGLPYRKIYVPALPLPFGERPKELEDVDVAIIRCVSQSRALYSARLLEALGVPVIN 77 (280)
T ss_pred HHHHHHHHHHHcCCceEEEEhhheEEEcCCCccccCCCCEEEEcCcchhhHHHHHHHHHHCCCcEEC
Confidence 457888999999988642 000000111 22234778888 666555566677888998885
No 332
>PRK03202 6-phosphofructokinase; Provisional
Probab=25.22 E-value=1.1e+02 Score=30.76 Aligned_cols=44 Identities=27% Similarity=0.416 Sum_probs=33.3
Q ss_pred HHHHHHHHHHhhhhCCCEEEEEcCCCCchhH-HHHHHHHhhCCCeEEeC
Q 017886 267 TQERQDAMYKMVEEKVDLILVVGGWNSSNTS-HLQEIAEDRGIPSYWID 314 (364)
Q Consensus 267 T~~RQ~a~~eLa~~~vD~miVVGGknSSNT~-rL~eia~~~~~~t~~Ie 314 (364)
...++.+++.|-+...|.+|+|||-.|-.+. +|+| .+.+...|-
T Consensus 79 ~~~~~~~~~~l~~~~Id~Li~IGGd~s~~~a~~L~e----~~i~vigiP 123 (320)
T PRK03202 79 EEGRAKAIENLKKLGIDALVVIGGDGSYMGAKRLTE----HGIPVIGLP 123 (320)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCChHHHHHHHHHHh----cCCcEEEec
Confidence 4678888888876789999999999887665 5554 466766653
No 333
>cd08180 PDD 1,3-propanediol dehydrogenase (PPD) catalyzes the reduction of 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol in glycerol metabolism. 1,3-propanediol dehydrogenase (PPD) plays a role in glycerol metabolism of some bacteria in anaerobic conditions. In this degradation pathway, glycerol is converted in a two-step process to 1,3-propanediol (1,3-PD) which is then excreted into the extracellular medium. The first reaction involves the transformation of glycerol into 3-hydroxypropionaldehyde (3-HPA) by a coenzyme B-12-dependent dehydratase. The second reaction involves the dismutation of the 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol by the NADH-linked 1,3-propanediol dehydrogenase (PPD). The enzyme require iron ion for its function. Because many genes in this pathway are present in the pdu (propanediol utilisation) operon, they are also named pdu genes. PPD is a member of the iron-containing alcohol dehydrogenase superfamily. The PPD structure has a dehydroquinat
Probab=25.16 E-value=3.6e+02 Score=26.60 Aligned_cols=88 Identities=15% Similarity=0.194 Sum_probs=50.7
Q ss_pred ceEEEEEcCCCChH-HHHHHHHHHHHHHhhhccccccccccccccccc-HHHHHHHH-HHHHhhhhCCCEEEEEcCCCCc
Q 017886 218 VKVGIANQTTMLKG-ETEEIGKLVEKTMMRKFGVENVNEHFISFNTIC-DATQERQD-AMYKMVEEKVDLILVVGGWNSS 294 (364)
Q Consensus 218 ~kv~vvsQTT~~~~-~~~~i~~~l~~~~~~~~~~~~~~~~~~v~nTIC-~AT~~RQ~-a~~eLa~~~vD~miVVGGknSS 294 (364)
+++.+|........ .++++.+.|+.. .++.+|+.++ +.|.+-=+ ++..+....+|++|-|||=..-
T Consensus 23 ~~~lvv~~~~~~~~g~~~~v~~~l~~~-----------~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~d~IiaiGGGs~~ 91 (332)
T cd08180 23 KRVLIVTDPFMVKSGMLDKVTDHLDSS-----------IEVEIFSDVVPDPPIEVVAKGIKKFLDFKPDIVIALGGGSAI 91 (332)
T ss_pred CeEEEEeCchhhhCccHHHHHHHHHhc-----------CcEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEECCchHH
Confidence 47777775544332 456666666431 1244566665 33333222 2222323569999999999999
Q ss_pred hhHHHHHHHHh-----hCCCeEEeCCC
Q 017886 295 NTSHLQEIAED-----RGIPSYWIDSE 316 (364)
Q Consensus 295 NT~rL~eia~~-----~~~~t~~Ie~~ 316 (364)
.+-|.+.+... .+.|-+.|-|-
T Consensus 92 D~aKa~a~~~~~~~~~~~~p~i~VPTt 118 (332)
T cd08180 92 DAAKAIIYFAKKLGKKKKPLFIAIPTT 118 (332)
T ss_pred HHHHHHHHHHhCCCCCCCCCEEEeCCC
Confidence 99987655322 23566777654
No 334
>cd06293 PBP1_LacI_like_11 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=25.05 E-value=5.2e+02 Score=23.41 Aligned_cols=121 Identities=15% Similarity=0.162 Sum_probs=57.8
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHHH-HHHHhhhhCCCEEEEEcCCCCchhHH
Q 017886 220 VGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQD-AMYKMVEEKVDLILVVGGWNSSNTSH 298 (364)
Q Consensus 220 v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ~-a~~eLa~~~vD~miVVGGknSSNT~r 298 (364)
|+++.+..- -.-|..+.+-+.+...+. + -++.+++ ++....+|. .++.|.+..+|.+|+.+... |-..
T Consensus 2 Ig~i~~~~~-~~~~~~~~~gi~~~~~~~-g-----y~v~~~~--~~~~~~~~~~~i~~~~~~~~dgiii~~~~~--~~~~ 70 (269)
T cd06293 2 IGLVVPDIA-NPFFAELADAVEEEADAR-G-----LSLVLCA--TRNRPERELTYLRWLDTNHVDGLIFVTNRP--DDGA 70 (269)
T ss_pred EEEEeCCCC-CCcHHHHHHHHHHHHHHC-C-----CEEEEEe--CCCCHHHHHHHHHHHHHCCCCEEEEeCCCC--CHHH
Confidence 556665432 234556666555432222 1 1232221 122234443 34445456899999997432 2234
Q ss_pred HHHHHHhhCCCeEEeCCCC-ccCCCCcchhhh-ccchhhhhcccCCCCCCEEEEEeCC
Q 017886 299 LQEIAEDRGIPSYWIDSEK-RIGPGNKIAYKL-MHGELVEKENWLPKGQITIGITSGA 354 (364)
Q Consensus 299 L~eia~~~~~~t~~Ie~~~-eL~~~~~~~~~~-~~~~~~~~~~wl~~~~~~VGITAGA 354 (364)
+.++. +.+.|.+.|.+.. +..- ..+.... ..|+. -....+..|.++||+..|.
T Consensus 71 ~~~~~-~~~~pvV~i~~~~~~~~~-~~V~~d~~~~~~~-~~~~L~~~G~~~i~~i~~~ 125 (269)
T cd06293 71 LAKLI-NSYGNIVLVDEDVPGAKV-PKVFCDNEQGGRL-ATRHLARAGHRRIAFVGGP 125 (269)
T ss_pred HHHHH-hcCCCEEEECCCCCCCCC-CEEEECCHHHHHH-HHHHHHHCCCceEEEEecC
Confidence 44444 4578999998642 2211 1111111 11111 1112233478999988764
No 335
>COG2388 Predicted acetyltransferase [General function prediction only]
Probab=25.03 E-value=61 Score=27.25 Aligned_cols=19 Identities=11% Similarity=0.450 Sum_probs=15.7
Q ss_pred HHHHHHhcCCcEEeccCchh
Q 017886 111 EMVTLNNKNVQIVDTTCPWV 130 (364)
Q Consensus 111 v~~~l~~~g~~iiDaTCP~V 130 (364)
..+.+++.|++|| .+|||-
T Consensus 64 al~~ar~~g~kii-P~Csf~ 82 (99)
T COG2388 64 ALEEAREAGLKII-PLCSFA 82 (99)
T ss_pred HHHHHHHcCCeEc-ccchHH
Confidence 3678899999999 899943
No 336
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=24.95 E-value=4.9e+02 Score=26.56 Aligned_cols=94 Identities=10% Similarity=0.115 Sum_probs=54.6
Q ss_pred EecccccCHHHHHHHHH--cCcEEecCCccccccccccCCCEEEEcCCCCCHH--HHHHHHhcCCcEEe---c-----cC
Q 017886 60 ITNEIIHNPTVNKRLEE--MAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVE--EMVTLNNKNVQIVD---T-----TC 127 (364)
Q Consensus 60 ~lG~iIHN~~Vv~~L~~--~Gv~~v~~~~~~~~~~~l~~g~~VIIrAHGv~~~--v~~~l~~~g~~iiD---a-----TC 127 (364)
+.-+.-.++...+.|++ .|+.+..... +.+.+.+-|.||++. |+|+. .++.++++|+.|+. . .+
T Consensus 33 ~~~D~~~~~~~~~~l~~~~~g~~~~~~~~---~~~~~~~~d~vV~sp-~i~~~~p~~~~a~~~~i~i~~~~el~~~~~~~ 108 (448)
T PRK03803 33 AVMDSREQPPGLDTLAREFPDVELRCGGF---DCELLVQASEIIISP-GLALDTPALRAAAAMGIEVIGDIELFAREAKA 108 (448)
T ss_pred EEEeCCCCchhHHHHHhhcCCcEEEeCCC---ChHHhcCCCEEEECC-CCCCCCHHHHHHHHCCCcEEEHHHHHHHhcCC
Confidence 33444445555567887 4988864211 122233446565555 99864 78888999999874 0 12
Q ss_pred chh---------HHHHHHHHHHhhCCCeEEEEecCCCce
Q 017886 128 PWV---------SKVWTSVEKHKKGDYTSIIHGKYSHEE 157 (364)
Q Consensus 128 P~V---------~kv~~~v~~~~~~Gy~iIIiG~~~HpE 157 (364)
|.| +-..=+..-|...|+.+.+-|.-+.|-
T Consensus 109 ~~I~VTGT~GKTTTt~li~~iL~~~g~~~~~ggnig~p~ 147 (448)
T PRK03803 109 PVIAITGSNGKSTVTTLVGEMAKAAGKRVAVGGNIGTPA 147 (448)
T ss_pred CEEEEECCCcHHHHHHHHHHHHHhcCCCeEEecCcCHHH
Confidence 322 112223333556788888888766664
No 337
>TIGR02955 TMAO_TorT TMAO reductase system periplasmic protein TorT. Members of this family are the periplasmic protein TorT which, together with the the TorS/TorR histidine kinase/response regulator system, regulates expression of the torCAD operon for trimethylamine N-oxide reductase (TMAO reductase). It appears to bind an inducer for TMAO reductase, and shows homology to a periplasmic D-ribose binding protein.
Probab=24.94 E-value=4.8e+02 Score=24.51 Aligned_cols=87 Identities=10% Similarity=0.014 Sum_probs=43.1
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHH-HHHHHhhhhCCCEEEEEcCCCCchhHH
Q 017886 220 VGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSNTSH 298 (364)
Q Consensus 220 v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ-~a~~eLa~~~vD~miVVGGknSSNT~r 298 (364)
++++..+ ++-.-|..+...+.+..... + -++.++++-=..-.+.| +.+..|.+..+|.+|+.+...++-...
T Consensus 2 igvvvp~-~~n~f~~~~~~gi~~~a~~~-g-----~~v~~~~~~~~~~~~~~~~~i~~l~~~~vDgiIi~~~~~~~~~~~ 74 (295)
T TIGR02955 2 LCALYPH-LKDSYWLSINYGMVEQAKHL-G-----VELKVLEAGGYPNLDKQLAQIEQCKSWGADAILLGTVSPEALNHD 74 (295)
T ss_pred eeEEecC-CCcHHHHHHHHHHHHHHHHh-C-----CEEEEEcCCCCCCHHHHHHHHHHHHHcCCCEEEEecCChhhhhHH
Confidence 5555543 44556777777666532221 1 22333221000022445 344444457899999986432211233
Q ss_pred HHHHHHhhCCCeEEeCC
Q 017886 299 LQEIAEDRGIPSYWIDS 315 (364)
Q Consensus 299 L~eia~~~~~~t~~Ie~ 315 (364)
|.+ .. .+.|...+.+
T Consensus 75 l~~-~~-~~iPvV~~~~ 89 (295)
T TIGR02955 75 LAQ-LT-KSIPVFALVN 89 (295)
T ss_pred HHH-Hh-cCCCEEEEec
Confidence 333 33 4788877744
No 338
>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. Note that SP|P53981 from S. cerevisiae, a member of this family, is annotated as a "probable membrane protein" due to a predicted transmembrane helix. The region in question contains the second of the three conserved HAD superfamily catalytic motifs and thus, considering the fold of the HAD catalytic domain, is unlikely to be a transmembrane region in fact.
Probab=24.81 E-value=3.5e+02 Score=23.22 Aligned_cols=20 Identities=15% Similarity=0.006 Sum_probs=12.0
Q ss_pred HHHHHHhhC-CCeEEEEecCC
Q 017886 135 TSVEKHKKG-DYTSIIHGKYS 154 (364)
Q Consensus 135 ~~v~~~~~~-Gy~iIIiG~~~ 154 (364)
..++++.++ ...++.+||.-
T Consensus 152 ~~~~~~~~~~~~~~i~iGD~~ 172 (188)
T TIGR01489 152 KVIHKLSEPKYQHIIYIGDGV 172 (188)
T ss_pred HHHHHHHhhcCceEEEECCCc
Confidence 344444444 67788888653
No 339
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=24.57 E-value=1.4e+02 Score=22.43 Aligned_cols=35 Identities=26% Similarity=0.302 Sum_probs=27.3
Q ss_pred hCCCEEEEEcC-CCCchhHHHHHHHHhhCCCeEEeC
Q 017886 280 EKVDLILVVGG-WNSSNTSHLQEIAEDRGIPSYWID 314 (364)
Q Consensus 280 ~~vD~miVVGG-knSSNT~rL~eia~~~~~~t~~Ie 314 (364)
.+-|+++++.- .+|..+..+++.+++.|.+++-|-
T Consensus 46 ~~~d~~i~iS~sg~t~~~~~~~~~a~~~g~~ii~it 81 (87)
T cd04795 46 RKGDVVIALSYSGRTEELLAALEIAKELGIPVIAIT 81 (87)
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHcCCeEEEEe
Confidence 35799988874 457889999999999887776654
No 340
>PF00365 PFK: Phosphofructokinase; InterPro: IPR000023 The enzyme-catalysed transfer of a phosphoryl group from ATP is an important reaction in a wide variety of biological processes []. One enzyme that utilises this reaction is phosphofructokinase (PFK), which catalyses the phosphorylation of fructose-6-phosphate to fructose-1,6- bisphosphate, a key regulatory step in the glycolytic pathway [, ]. PFK exists as a homotetramer in bacteria and mammals (where each monomer possesses 2 similar domains), and as an octomer in yeast (where there are 4 alpha- (PFK1) and 4 beta-chains (PFK2), the latter, like the mammalian monomers, possessing 2 similar domains []). PFK is ~300 amino acids in length, and structural studies of the bacterial enzyme have shown it comprises two similar (alpha/beta) lobes: one involved in ATP binding and the other housing both the substrate-binding site and the allosteric site (a regulatory binding site distinct from the active site, but that affects enzyme activity). The identical tetramer subunits adopt 2 different conformations: in a 'closed' state, the bound magnesium ion bridges the phosphoryl groups of the enzyme products (ADP and fructose-1,6- bisphosphate); and in an 'open' state, the magnesium ion binds only the ADP [], as the 2 products are now further apart. These conformations are thought to be successive stages of a reaction pathway that requires subunit closure to bring the 2 molecules sufficiently close to react []. Deficiency in PFK leads to glycogenosis type VII (Tauri's disease), an autosomal recessive disorder characterised by severe nausea, vomiting, muscle cramps and myoglobinuria in response to bursts of intense or vigorous exercise []. Sufferers are usually able to lead a reasonably ordinary life by learning to adjust activity levels [].; GO: 0003872 6-phosphofructokinase activity, 0006096 glycolysis, 0005945 6-phosphofructokinase complex; PDB: 3O8O_E 3OPY_H 1PFK_A 2PFK_D 1MTO_F 3U39_C 6PFK_A 4PFK_A 3PFK_A 3HNO_B ....
Probab=24.56 E-value=55 Score=32.14 Aligned_cols=43 Identities=28% Similarity=0.427 Sum_probs=30.0
Q ss_pred HHHHHHHHhhhhCCCEEEEEcCCCCchhHHHHHHHHhhCCCeEEe
Q 017886 269 ERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWI 313 (364)
Q Consensus 269 ~RQ~a~~eLa~~~vD~miVVGGknSSNT~rL~eia~~~~~~t~~I 313 (364)
.|++.++.|-...+|.+|+|||-.|-.+-++. +++.+.+...|
T Consensus 80 ~~~~~~~~l~~~~Id~Li~IGG~gs~~~a~~L--~~~~~i~vigi 122 (282)
T PF00365_consen 80 GRKKIVENLKKLGIDALIVIGGDGSMKGAHKL--SEEFGIPVIGI 122 (282)
T ss_dssp HHHHHHHHHHHTTESEEEEEESHHHHHHHHHH--HHHHHSEEEEE
T ss_pred hhhhHHHHHHHhCCCEEEEecCCCHHHHHHHH--HhcCceEEEEE
Confidence 45566777765689999999999998776543 33444666655
No 341
>cd06276 PBP1_FucR_like Ligand-binding domain of a transcription repressor, FucR, which functions as a molecular sensor of L-fucose availability. Ligand-binding domain of a transcription repressor, FucR, which functions as a molecular sensor of L-fucose availability. FcuR acts as an inducer of fucRRIAK and as a corepressor of another locus that regulates production of fucosylated glycans. FcuR and its close homologs in this group are a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes t
Probab=24.46 E-value=1.5e+02 Score=27.28 Aligned_cols=45 Identities=7% Similarity=-0.055 Sum_probs=29.6
Q ss_pred HHHHHHHhhhhCCCEEEEEcCCCCchhHHHHHHHHhhCCCeEEeCCC
Q 017886 270 RQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSE 316 (364)
Q Consensus 270 RQ~a~~eLa~~~vD~miVVGGknSSNT~rL~eia~~~~~~t~~Ie~~ 316 (364)
..+++..+...++|.+|+++...+.++ +....++.+.|...+...
T Consensus 41 ~~~~~~~~~~~~vdGvIi~~~~~~~~~--~~~~~~~~~~PvV~i~~~ 85 (247)
T cd06276 41 LFKNIISNTKGKYSGYVVMPHFKNEIQ--YFLLKKIPKEKLLILDHS 85 (247)
T ss_pred HHHHHHHHHhcCCCEEEEecCCCCcHH--HHHHhccCCCCEEEEcCc
Confidence 333444333478999999986545443 445555567899999875
No 342
>PF15088 NADH_dh_m_C1: NADH dehydrogenase [ubiquinone] 1 subunit C1, mitochondrial
Probab=24.43 E-value=39 Score=24.91 Aligned_cols=17 Identities=41% Similarity=0.710 Sum_probs=14.9
Q ss_pred ccCCCCCCEEEEEeCCCCCHHH
Q 017886 339 NWLPKGQITIGITSGASTPDKV 360 (364)
Q Consensus 339 ~wl~~~~~~VGITAGASTP~~l 360 (364)
+|+ +||+|-|+|.--|.
T Consensus 13 nWl-----kVGLtlGts~flW~ 29 (49)
T PF15088_consen 13 NWL-----KVGLTLGTSVFLWI 29 (49)
T ss_pred Chh-----heeeecchHHHHHH
Confidence 888 89999999987774
No 343
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=24.42 E-value=2.4e+02 Score=20.30 Aligned_cols=46 Identities=17% Similarity=0.204 Sum_probs=24.8
Q ss_pred eEEEEeCCCCCcccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHH
Q 017886 25 VKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRL 74 (364)
Q Consensus 25 mkI~lA~~~GFC~GV~RAi~~a~~~~~~~~~~~vy~lG~iIHN~~Vv~~L 74 (364)
+.+.-+...++| +++..+..+....++ +--|..=++-.|+...+++
T Consensus 3 v~~f~~~~C~~C---~~~~~~l~~l~~~~~-~i~~~~id~~~~~~l~~~~ 48 (67)
T cd02973 3 IEVFVSPTCPYC---PDAVQAANRIAALNP-NISAEMIDAAEFPDLADEY 48 (67)
T ss_pred EEEEECCCCCCc---HHHHHHHHHHHHhCC-ceEEEEEEcccCHhHHHHc
Confidence 456678999999 444444444433332 2223333556666555443
No 344
>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase. One member from Halobacterium is annotated as "molybdenum-binding protein" although no evidence can be found for this classification.
Probab=24.30 E-value=2.7e+02 Score=29.81 Aligned_cols=44 Identities=7% Similarity=0.001 Sum_probs=30.0
Q ss_pred HHHHHHHHhcCCcEEeccCchhHHHHHHHHHHhhCCCeEEEEecCC
Q 017886 109 VEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYS 154 (364)
Q Consensus 109 ~~v~~~l~~~g~~iiDaTCP~V~kv~~~v~~~~~~Gy~iIIiG~~~ 154 (364)
......+++.|+.+.....|.- | .+.++++.++|+.++.+||.-
T Consensus 433 ~~a~~ia~~lgi~~~~~~~p~~-K-~~~v~~l~~~~~~v~~VGDg~ 476 (562)
T TIGR01511 433 KTAKAVAKELGINVRAEVLPDD-K-AALIKELQEKGRVVAMVGDGI 476 (562)
T ss_pred HHHHHHHHHcCCcEEccCChHH-H-HHHHHHHHHcCCEEEEEeCCC
Confidence 3455566667777665555542 2 356777778899999999874
No 345
>cd06362 PBP1_mGluR Ligand binding domain of the metabotropic glutamate receptors (mGluR). Ligand binding domain of the metabotropic glutamate receptors (mGluR), which are members of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into cellular responses. mGluRs bind to glutamate and function as an excitatory neurotransmitter; they are involved in learning, memory, anxiety, and the perception of pain. Eight subtypes of mGluRs have been cloned so far, and are classified into three groups according to their sequence similarities, transduction mechanisms, and pharmacological profiles. Group I is composed of mGlu1R and mGlu5R that both stimulate PLC hydrolysis. Group II includes mGlu2R and mGlu3R, which inhibit adenylyl cyclase, as do mGlu4R, mGlu6R, mGlu7R, and mGlu8R, which form group III.
Probab=24.23 E-value=89 Score=31.64 Aligned_cols=30 Identities=20% Similarity=0.152 Sum_probs=26.3
Q ss_pred CCEEEEEcCCCCchhHHHHHHHHhhCCCeE
Q 017886 282 VDLILVVGGWNSSNTSHLQEIAEDRGIPSY 311 (364)
Q Consensus 282 vD~miVVGGknSSNT~rL~eia~~~~~~t~ 311 (364)
-.++.|||+..|+-|..+..+|...+.|-+
T Consensus 102 ~~v~aviG~~~S~~~~av~~~~~~~~ip~I 131 (452)
T cd06362 102 KPVAGVIGASYSSVSIQVANLLRLFKIPQI 131 (452)
T ss_pred CCeEEEECCCCCchHHHHHHHhccccCccc
Confidence 468899999999999999999999887754
No 346
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=23.94 E-value=1.5e+02 Score=24.33 Aligned_cols=38 Identities=13% Similarity=0.243 Sum_probs=30.6
Q ss_pred hCCCEEEEEcC-CCCchhHHHHHHHHhhCCCeEEeCCCC
Q 017886 280 EKVDLILVVGG-WNSSNTSHLQEIAEDRGIPSYWIDSEK 317 (364)
Q Consensus 280 ~~vD~miVVGG-knSSNT~rL~eia~~~~~~t~~Ie~~~ 317 (364)
.+-|++|+|.- -+|.++.+.++.|++.|.++.-|.+..
T Consensus 45 ~~~d~~I~iS~sG~t~e~~~~~~~a~~~g~~vi~iT~~~ 83 (126)
T cd05008 45 DEDTLVIAISQSGETADTLAALRLAKEKGAKTVAITNVV 83 (126)
T ss_pred CCCcEEEEEeCCcCCHHHHHHHHHHHHcCCeEEEEECCC
Confidence 46798888864 566778899999999999999888764
No 347
>PTZ00365 60S ribosomal protein L7Ae-like; Provisional
Probab=23.64 E-value=68 Score=31.64 Aligned_cols=39 Identities=13% Similarity=0.194 Sum_probs=33.7
Q ss_pred CEEEEEcCCCCchhHHHH--HHHHhhCCCeEEeCCCCccCC
Q 017886 283 DLILVVGGWNSSNTSHLQ--EIAEDRGIPSYWIDSEKRIGP 321 (364)
Q Consensus 283 D~miVVGGknSSNT~rL~--eia~~~~~~t~~Ie~~~eL~~ 321 (364)
=-+|||.+--|.||.+.+ .+|+.++.|-+.+.+-++|-.
T Consensus 149 AkLVIIA~DVsP~t~kk~LP~LC~k~~VPY~iv~sK~eLG~ 189 (266)
T PTZ00365 149 AKLVVIAHDVDPIELVCFLPALCRKKEVPYCIIKGKSRLGK 189 (266)
T ss_pred ccEEEEeCCCCHHHHHHHHHHHHhccCCCEEEECCHHHHHH
Confidence 457788888899999875 999999999999999999854
No 348
>PTZ00287 6-phosphofructokinase; Provisional
Probab=23.63 E-value=1.1e+02 Score=36.82 Aligned_cols=53 Identities=23% Similarity=0.295 Sum_probs=37.4
Q ss_pred HHHHHHHHHhhhhCCCEEEEEcCCCCc-hhHHHHHHHHhhCCCeEEeCCCCccC
Q 017886 268 QERQDAMYKMVEEKVDLILVVGGWNSS-NTSHLQEIAEDRGIPSYWIDSEKRIG 320 (364)
Q Consensus 268 ~~RQ~a~~eLa~~~vD~miVVGGknSS-NT~rL~eia~~~~~~t~~Ie~~~eL~ 320 (364)
.+++.+++-|.+-..|.+|||||-.|- +..+|++-+++.|.+.-.|-=+.=||
T Consensus 258 e~~~ki~e~lkkl~Id~LViIGGddS~~~A~~Lae~~~~~gi~i~VIGIPKTID 311 (1419)
T PTZ00287 258 DDLIAIENIVAKLKLNGLVIIGGDGSNSNAALISEYFAERQIPISIIGIPKTID 311 (1419)
T ss_pred HHHHHHHHHHHHcCCCEEEEECChhHHHHHHHHHHHHHhcCCCeeEEEEeeeec
Confidence 345555555554579999999999987 55589998888887754454444444
No 349
>PRK14987 gluconate operon transcriptional regulator; Provisional
Probab=23.48 E-value=6.4e+02 Score=23.92 Aligned_cols=85 Identities=12% Similarity=0.120 Sum_probs=46.4
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHH-HHHHHhhhhCCCEEEEEcCCCCchh
Q 017886 218 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSNT 296 (364)
Q Consensus 218 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ-~a~~eLa~~~vD~miVVGGknSSNT 296 (364)
..|+++.-+ ++-.-|.++.+-+.+...+. +-++.+.++ ....+.| +.+..|....+|.+|+.+...+
T Consensus 64 ~~Igvi~~~-~~~~~~~~~~~gi~~~~~~~------g~~~~~~~~--~~~~~~~~~~~~~~~~~~vdgiI~~~~~~~--- 131 (331)
T PRK14987 64 RAIGVLLPS-LTNQVFAEVLRGIESVTDAH------GYQTMLAHY--GYKPEMEQERLESMLSWNIDGLILTERTHT--- 131 (331)
T ss_pred CEEEEEeCC-CcchhHHHHHHHHHHHHHHC------CCEEEEecC--CCCHHHHHHHHHHHHhcCCCEEEEcCCCCC---
Confidence 467877643 44456777777776543222 112323221 1112233 3444454568999999864322
Q ss_pred HHHHHHHHhhCCCeEEeC
Q 017886 297 SHLQEIAEDRGIPSYWID 314 (364)
Q Consensus 297 ~rL~eia~~~~~~t~~Ie 314 (364)
....+.+.+.+.|...+.
T Consensus 132 ~~~~~~l~~~~iPvV~~~ 149 (331)
T PRK14987 132 PRTLKMIEVAGIPVVELM 149 (331)
T ss_pred HHHHHHHHhCCCCEEEEe
Confidence 334455567788988763
No 350
>cd08190 HOT Hydroxyacid-oxoacid transhydrogenase (HOT) involved in gamma-hydroxybutyrate metabolism. Hydroxyacid-oxoacid transhydrogenase (HOT), also known as D-2-hydroxyglutarate transhydrogenase. It catalyzes the conversion of gamma-hydroxybutyrate (GHB) to succinic semialdehyde (SSA), coupled to the stoichiometric conversion of alpha-ketoglutarate to D-2-hydroxyglutarate in gamma-Hydroxybutyrate catabolism. Unlike many other alcohols, which are oxidized by NAD-linked dehydrogenases, gamma-hydroxybutyrate is metabolized to succinate semialdehyde by hydroxyacid-oxoacid transhydrogenase which does not require free NAD or NADP, but instead using alpha -ketoglutarate as an acceptor, converting it to d-2-hydroxyglutarate. Alpha-ketoglutarate serves as an intermediate acceptor to regenerate NAD(P) required for the oxidation of GHB. HOT also catalyzes the reversible oxidation of a hydroxyacid obligatorily coupled to the reduction of an oxoacid, and requires no cofactor. In mammals, the HOT
Probab=23.39 E-value=2.6e+02 Score=28.76 Aligned_cols=79 Identities=13% Similarity=0.206 Sum_probs=47.9
Q ss_pred ceEEEEEcCCCChH-HHHHHHHHHHHHHhhhccccccccccccccc-ccHHHHHHHHHHHHhh-hhCCCEEEEEcCCCCc
Q 017886 218 VKVGIANQTTMLKG-ETEEIGKLVEKTMMRKFGVENVNEHFISFNT-ICDATQERQDAMYKMV-EEKVDLILVVGGWNSS 294 (364)
Q Consensus 218 ~kv~vvsQTT~~~~-~~~~i~~~l~~~~~~~~~~~~~~~~~~v~nT-IC~AT~~RQ~a~~eLa-~~~vD~miVVGGknSS 294 (364)
+++.||...++... .++++.+.|++. +.++.+|+. -.+.|.+-=..+.+++ ..++|++|-|||=..-
T Consensus 24 ~~vlivt~~~~~~~g~~~~v~~~L~~~----------gi~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGSvi 93 (414)
T cd08190 24 RRVCLVTDPNLAQLPPVKVVLDSLEAA----------GINFEVYDDVRVEPTDESFKDAIAFAKKGQFDAFVAVGGGSVI 93 (414)
T ss_pred CeEEEEECcchhhcchHHHHHHHHHHc----------CCcEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCccHH
Confidence 57888887665443 467777777541 122334432 2233333223333333 3579999999999999
Q ss_pred hhHHHHHHHHhh
Q 017886 295 NTSHLQEIAEDR 306 (364)
Q Consensus 295 NT~rL~eia~~~ 306 (364)
.+-|..-+....
T Consensus 94 D~AKaia~~~~~ 105 (414)
T cd08190 94 DTAKAANLYASH 105 (414)
T ss_pred HHHHHHHHHHhC
Confidence 998888776543
No 351
>COG2087 CobU Adenosyl cobinamide kinase/adenosyl cobinamide phosphate guanylyltransferase [Coenzyme metabolism]
Probab=23.29 E-value=1.1e+02 Score=28.44 Aligned_cols=39 Identities=23% Similarity=0.417 Sum_probs=33.1
Q ss_pred EEEEEcCCCCchhHHHHHHHHhhCCCeEEeCCCCccCCC
Q 017886 284 LILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPG 322 (364)
Q Consensus 284 ~miVVGGknSSNT~rL~eia~~~~~~t~~Ie~~~eL~~~ 322 (364)
.++|.||..|.-++.==.++.+.+.+.++|-|....|.+
T Consensus 2 ~ilvtGgaRSGKS~~AE~la~~~~~~v~YvAT~~a~D~E 40 (175)
T COG2087 2 MILVTGGARSGKSSFAEALAGESGGQVLYVATGRAFDDE 40 (175)
T ss_pred eEEEecCccCCchHHHHHHHHhhCCceEEEEecCCCCHH
Confidence 479999999998887777788878889999999988763
No 352
>PRK06464 phosphoenolpyruvate synthase; Validated
Probab=23.27 E-value=1.3e+02 Score=33.93 Aligned_cols=48 Identities=19% Similarity=0.221 Sum_probs=42.6
Q ss_pred CcccHHHHHHHHHHHHhhCCCCceEEecccccC-HHHHHHHHHcCcEEec
Q 017886 35 FCWGVERAVQIAYEARKQFPEEKIWITNEIIHN-PTVNKRLEEMAVQNIP 83 (364)
Q Consensus 35 FC~GV~RAi~~a~~~~~~~~~~~vy~lG~iIHN-~~Vv~~L~~~Gv~~v~ 83 (364)
+-..|.+||+.+.++.++. +.++-+.|++..+ |.....|-.+|+.++.
T Consensus 723 ~hPav~~ai~~vi~aa~~~-g~~vgicge~a~~~p~~~~~l~~~G~~~ls 771 (795)
T PRK06464 723 RNPAVKKLISMAIKAAKKA-GKYVGICGQAPSDHPDFAEWLVEEGIDSIS 771 (795)
T ss_pred CCHHHHHHHHHHHHHHHHc-CCEEEEcCCCCCCcHHHHHHHHHCCCCEEE
Confidence 4569999999998888775 4789999999998 9999999999999886
No 353
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=23.26 E-value=47 Score=26.19 Aligned_cols=49 Identities=12% Similarity=0.094 Sum_probs=37.9
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCcEEeccCchhHHHHHHHHHHhhCCCeEEEEecCCCceeeeecccCC
Q 017886 99 VVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAG 166 (364)
Q Consensus 99 ~VIIrAHGv~~~v~~~l~~~g~~iiDaTCP~V~kv~~~v~~~~~~Gy~iIIiG~~~HpEv~gi~g~~~ 166 (364)
.+|+=.||...-. .+-+..++.++++||.|+.+=.++|-...|..|+.+
T Consensus 17 ~~v~i~HG~~eh~-------------------~ry~~~a~~L~~~G~~V~~~D~rGhG~S~g~rg~~~ 65 (79)
T PF12146_consen 17 AVVVIVHGFGEHS-------------------GRYAHLAEFLAEQGYAVFAYDHRGHGRSEGKRGHID 65 (79)
T ss_pred EEEEEeCCcHHHH-------------------HHHHHHHHHHHhCCCEEEEECCCcCCCCCCcccccC
Confidence 4667789985433 233456789999999999999999999998777653
No 354
>KOG2900 consensus Biotin synthase [Coenzyme transport and metabolism]
Probab=23.20 E-value=2.1e+02 Score=28.57 Aligned_cols=84 Identities=14% Similarity=0.289 Sum_probs=49.4
Q ss_pred CCCCCcccH--------HHHH----HHHHHHHhhCCCCceEEecccccCHHHHHHHHHcCcEEecCCccccccccccC--
Q 017886 31 ESYGFCWGV--------ERAV----QIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNK-- 96 (364)
Q Consensus 31 ~~~GFC~GV--------~RAi----~~a~~~~~~~~~~~vy~lG~iIHN~~Vv~~L~~~Gv~~v~~~~~~~~~~~l~~-- 96 (364)
.+--||+|- ++|. ++..+.... +=+-..|||.+ |.|--..|+..|+..-+. .+|.-.+
T Consensus 133 GSTRFCmGaAWRD~~GRk~~fk~IlE~ikevr~M-gmEvCvTLGMv--~~qQAkeLKdAGLTAYNH-----NlDTSREyY 204 (380)
T KOG2900|consen 133 GSTRFCMGAAWRDMKGRKSAFKRILEMIKEVRDM-GMEVCVTLGMV--DQQQAKELKDAGLTAYNH-----NLDTSREYY 204 (380)
T ss_pred CCceeecchhhhhhccchhHHHHHHHHHHHHHcC-Cceeeeeeccc--cHHHHHHHHhccceeccc-----Cccchhhhh
Confidence 444588874 3444 444444332 22468899987 788889999999998875 2333222
Q ss_pred CCEEEEcCCCCCHHHHHHHHhcCCcE
Q 017886 97 GDVVVLPAFGAAVEEMVTLNNKNVQI 122 (364)
Q Consensus 97 g~~VIIrAHGv~~~v~~~l~~~g~~i 122 (364)
..++--|...---+..+.+++.|+++
T Consensus 205 skvItTRtYDdRL~Ti~nvr~aGikv 230 (380)
T KOG2900|consen 205 SKVITTRTYDDRLQTIKNVREAGIKV 230 (380)
T ss_pred cccceecchHHHHHHHHHHHHhccee
Confidence 12222444444445566666666665
No 355
>cd06272 PBP1_hexuronate_repressor_like Ligand-binding domain of DNA transcription repressor for the hexuronate utilization operon from Bacillus species and its close homologs from other bacteria, all of which are a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor for the hexuronate utilization operon from Bacillus species and its close homologs from other bacteria, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor
Probab=23.19 E-value=5.5e+02 Score=23.13 Aligned_cols=83 Identities=12% Similarity=0.087 Sum_probs=45.0
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHHHHHHHhhhhCCCEEEEEcCCCCchhHHH
Q 017886 220 VGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHL 299 (364)
Q Consensus 220 v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ~a~~eLa~~~vD~miVVGGknSSNT~rL 299 (364)
++++.- +++-.-|.++..-+.+...+. + -++.+.++- +-++....|.+..+|.+|+.+... +.. .
T Consensus 2 igvv~~-~~~~~~~~~~~~gi~~~~~~~-g-----~~~~~~~~~-----~~~~~~~~l~~~~vdgii~~~~~~--~~~-~ 66 (261)
T cd06272 2 IGLIWP-SVSRVALTELVTGINQAISKN-G-----YNMNVSITP-----SLAEAEDLFKENRFDGVIIFGESA--SDV-E 66 (261)
T ss_pred EEEEec-CCCchhHHHHHHHHHHHHHHc-C-----CEEEEEecc-----cHHHHHHHHHHcCcCEEEEeCCCC--ChH-H
Confidence 345443 345566777777776643322 1 122222221 112334445446899999987532 222 2
Q ss_pred HHHHHhhCCCeEEeCCCC
Q 017886 300 QEIAEDRGIPSYWIDSEK 317 (364)
Q Consensus 300 ~eia~~~~~~t~~Ie~~~ 317 (364)
++...+.+.|...+++..
T Consensus 67 ~~~~~~~~ipvV~~~~~~ 84 (261)
T cd06272 67 YLYKIKLAIPVVSYGVDY 84 (261)
T ss_pred HHHHHHcCCCEEEEcccC
Confidence 344457889999998754
No 356
>COG0104 PurA Adenylosuccinate synthase [Nucleotide transport and metabolism]
Probab=23.19 E-value=1.2e+02 Score=31.76 Aligned_cols=50 Identities=12% Similarity=0.171 Sum_probs=43.3
Q ss_pred EcCCCCCHHHHHHHHhcCCcEEeccC---------------------------------------------chhHHHHHH
Q 017886 102 LPAFGAAVEEMVTLNNKNVQIVDTTC---------------------------------------------PWVSKVWTS 136 (364)
Q Consensus 102 IrAHGv~~~v~~~l~~~g~~iiDaTC---------------------------------------------P~V~kv~~~ 136 (364)
-..-|+.|.-.+++.++|+++.|--= |||.-+...
T Consensus 129 TTgrGIGPaY~DKv~R~giRv~DL~d~~~l~~kle~~~~~~n~~l~~~y~~~~~~~~~~~~~~~~~~~~l~~~v~D~~~~ 208 (430)
T COG0104 129 TTGRGIGPAYEDKVARRGIRVGDLLDPETLREKLERLLEYKNFQLVKYYGAEAVDFEDILDEYYEYAERLKPYVTDVSVL 208 (430)
T ss_pred CCCCccChhhhhhHhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHhcCcccccHHHHHHHHHHHHHhhcchhhhhHHH
Confidence 34568999999999999999977654 999999999
Q ss_pred HHHHhhCCCeEEEEe
Q 017886 137 VEKHKKGDYTSIIHG 151 (364)
Q Consensus 137 v~~~~~~Gy~iIIiG 151 (364)
+.++.++|.+|++=|
T Consensus 209 l~~a~~~g~~VLfEG 223 (430)
T COG0104 209 LNDALDAGKRVLFEG 223 (430)
T ss_pred HHHHHHcCCeEEEEc
Confidence 999999999999877
No 357
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=23.00 E-value=1.1e+02 Score=27.69 Aligned_cols=37 Identities=27% Similarity=0.448 Sum_probs=31.0
Q ss_pred EEEEcCCCCchhHHHHHHHHhhCCCeEEeCCCCccCC
Q 017886 285 ILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGP 321 (364)
Q Consensus 285 miVVGGknSSNT~rL~eia~~~~~~t~~Ie~~~eL~~ 321 (364)
++|+||..|.=|.-=.+++.+.+.+.+++.+..-++.
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~~~~~~y~at~~~~d~ 38 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELGGPVTYIATAEAFDD 38 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCeEEEEccCcCCH
Confidence 6899999999988777777777788999999887765
No 358
>PF04914 DltD_C: DltD C-terminal region; InterPro: IPR006998 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the C-terminal region of DltD.; PDB: 3BMA_C.
Probab=22.95 E-value=50 Score=28.99 Aligned_cols=58 Identities=16% Similarity=0.247 Sum_probs=31.9
Q ss_pred HHHHHHHcCcEEecCCccccccccccCCCEEEEcCCC-------CCHHH--------HHHHHhcCCcEEeccCchhHHHH
Q 017886 70 VNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFG-------AAVEE--------MVTLNNKNVQIVDTTCPWVSKVW 134 (364)
Q Consensus 70 Vv~~L~~~Gv~~v~~~~~~~~~~~l~~g~~VIIrAHG-------v~~~v--------~~~l~~~g~~iiDaTCP~V~kv~ 134 (364)
+++-|++.|+.++ .||++.+| +|++. ...+++.|..|+|-+
T Consensus 41 ~L~~~k~~g~~~l----------------fVi~PvNg~wydytG~~~~~r~~~y~kI~~~~~~~gf~v~D~s-------- 96 (130)
T PF04914_consen 41 LLDVCKELGIDVL----------------FVIQPVNGKWYDYTGLSKEMRQEYYKKIKYQLKSQGFNVADFS-------- 96 (130)
T ss_dssp HHHHHHHTT-EEE----------------EEE----HHHHHHTT--HHHHHHHHHHHHHHHHTTT--EEE-T--------
T ss_pred HHHHHHHcCCceE----------------EEecCCcHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEecc--------
Confidence 5666777777665 47778776 66664 455667777777754
Q ss_pred HHHHHHhhCCCeEEEEecCCCcee
Q 017886 135 TSVEKHKKGDYTSIIHGKYSHEET 158 (364)
Q Consensus 135 ~~v~~~~~~Gy~iIIiG~~~HpEv 158 (364)
+.+|.--.+.|.-|+=-
T Consensus 97 -------~~~y~~yfm~D~iHlgw 113 (130)
T PF04914_consen 97 -------DDEYEPYFMQDTIHLGW 113 (130)
T ss_dssp -------TGTTSTTSBSSSSSB-T
T ss_pred -------cCCCCCceeeecccCch
Confidence 66666667788888733
No 359
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=22.79 E-value=1.2e+02 Score=22.34 Aligned_cols=48 Identities=13% Similarity=0.129 Sum_probs=26.3
Q ss_pred HHHHHHHHcCcEEecCCccccccccccCCCEEEEcCCCCCH-HHHHHHHhcCCcEE
Q 017886 69 TVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAV-EEMVTLNNKNVQIV 123 (364)
Q Consensus 69 ~Vv~~L~~~Gv~~v~~~~~~~~~~~l~~g~~VIIrAHGv~~-~v~~~l~~~g~~ii 123 (364)
++.+-|.+.|+.+..-- .... .+...+.++. -.+ ...+.|+++|++|.
T Consensus 17 ~v~~~l~~~~inI~~i~----~~~~-~~~~~~rl~~--~~~~~~~~~L~~~G~~v~ 65 (66)
T cd04908 17 AVTEILSEAGINIRALS----IADT-SEFGILRLIV--SDPDKAKEALKEAGFAVK 65 (66)
T ss_pred HHHHHHHHCCCCEEEEE----EEec-CCCCEEEEEE--CCHHHHHHHHHHCCCEEE
Confidence 45667778888765310 0000 0112344444 445 77888888887763
No 360
>PRK10537 voltage-gated potassium channel; Provisional
Probab=22.79 E-value=1.6e+02 Score=30.40 Aligned_cols=74 Identities=16% Similarity=0.225 Sum_probs=49.9
Q ss_pred CCCEEEEcCCCCCHHHHHHHHhcCCc--EEeccCchhHHHHHHHHHHhhCCCeEEEEecCCCceeeeecccCC-cEEEEc
Q 017886 96 KGDVVVLPAFGAAVEEMVTLNNKNVQ--IVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAG-KYIIVK 172 (364)
Q Consensus 96 ~g~~VIIrAHGv~~~v~~~l~~~g~~--iiDaTCP~V~kv~~~v~~~~~~Gy~iIIiG~~~HpEv~gi~g~~~-~~~vv~ 172 (364)
++-+||+-.--+...+.++|+++|.. |||.- ..++..++|+. ++.||..++|+---.|-.. +++++.
T Consensus 240 k~HvII~G~g~lg~~v~~~L~~~g~~vvVId~d---------~~~~~~~~g~~-vI~GD~td~e~L~~AgI~~A~aVI~~ 309 (393)
T PRK10537 240 KDHFIICGHSPLAINTYLGLRQRGQAVTVIVPL---------GLEHRLPDDAD-LIPGDSSDSAVLKKAGAARARAILAL 309 (393)
T ss_pred CCeEEEECCChHHHHHHHHHHHCCCCEEEEECc---------hhhhhccCCCc-EEEeCCCCHHHHHhcCcccCCEEEEc
Confidence 35577888888888999999988865 46632 23445567776 6899999998864444332 456665
Q ss_pred ChhhHHH
Q 017886 173 NMKEAEY 179 (364)
Q Consensus 173 ~~~e~~~ 179 (364)
..+|.++
T Consensus 310 t~dD~~N 316 (393)
T PRK10537 310 RDNDADN 316 (393)
T ss_pred CCChHHH
Confidence 5555544
No 361
>cd01408 SIRT1 SIRT1: Eukaryotic group (class1) which includes human sirtuins SIRT1-3 and yeast Hst1-4; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The nuclear SIRT1 has been shown to target the p53 tumor suppressor protein for deacetylation to suppress DNA damage, and the cytoplasmic SIRT2 homolog has been shown to target alpha-tubulin for deacetylation for the maintenance of cell integrity.
Probab=22.76 E-value=1.9e+02 Score=27.38 Aligned_cols=56 Identities=18% Similarity=0.213 Sum_probs=34.3
Q ss_pred ccccccccccHHHHHHHHHHHHhhhhCCCEEEEEcCCCCch-hHHHHHHHHhhCCCeEEeC
Q 017886 255 EHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSN-TSHLQEIAEDRGIPSYWID 314 (364)
Q Consensus 255 ~~~~v~nTIC~AT~~RQ~a~~eLa~~~vD~miVVGGknSSN-T~rL~eia~~~~~~t~~Ie 314 (364)
+++..|+.-=.. ...+++.+.+ .++|++||||-.-.-. ...|.+.++ .+.+.+.|.
T Consensus 152 P~Vv~FGE~lp~--~~~~~~~~~~-~~aDlllvvGTSl~V~pa~~l~~~~~-~~~~~v~iN 208 (235)
T cd01408 152 PDIVFFGESLPS--RFFSHMEEDK-EEADLLIVIGTSLKVAPFASLPSRVP-SEVPRVLIN 208 (235)
T ss_pred CcEEECCCCCCH--HHHHHHHHHH-hcCCEEEEECCCCeeccHHHHHHHHh-CCCcEEEEe
Confidence 456666653222 2334455555 5799999999863333 345777776 567777665
No 362
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=22.68 E-value=3.7e+02 Score=21.55 Aligned_cols=72 Identities=17% Similarity=0.207 Sum_probs=44.4
Q ss_pred HHHHHHHHHcCcEEecC--Ccccc--c--cc-cccCCCEEEEc----CCCCCHHHHHHHHhcCCcEEeccCchhHHHHHH
Q 017886 68 PTVNKRLEEMAVQNIPV--EEGKK--Q--FD-VVNKGDVVVLP----AFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTS 136 (364)
Q Consensus 68 ~~Vv~~L~~~Gv~~v~~--~~~~~--~--~~-~l~~g~~VIIr----AHGv~~~v~~~l~~~g~~iiDaTCP~V~kv~~~ 136 (364)
++..+.+++.|..++-. ..+.. . ++ .+..-|.||+. +|+....+.+.+++.|+.++=+-..=+..+.+.
T Consensus 13 ~~~~~~~~~~G~~~~~hg~~~~~~~~~~~l~~~i~~aD~VIv~t~~vsH~~~~~vk~~akk~~ip~~~~~~~~~~~l~~~ 92 (97)
T PF10087_consen 13 RRYKRILEKYGGKLIHHGRDGGDEKKASRLPSKIKKADLVIVFTDYVSHNAMWKVKKAAKKYGIPIIYSRSRGVSSLERA 92 (97)
T ss_pred HHHHHHHHHcCCEEEEEecCCCCccchhHHHHhcCCCCEEEEEeCCcChHHHHHHHHHHHHcCCcEEEECCCCHHHHHHH
Confidence 44556667777776543 11110 1 22 23345666654 788889999999999999986665555555555
Q ss_pred HHH
Q 017886 137 VEK 139 (364)
Q Consensus 137 v~~ 139 (364)
..+
T Consensus 93 l~~ 95 (97)
T PF10087_consen 93 LER 95 (97)
T ss_pred HHh
Confidence 443
No 363
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=22.59 E-value=4.4e+02 Score=24.95 Aligned_cols=82 Identities=7% Similarity=0.099 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhCCCCceEEecccc---cCHHHHHHHHHcCcEEecCCccccccc---cccCCCEEE-EcCCCCCH---
Q 017886 40 ERAVQIAYEARKQFPEEKIWITNEII---HNPTVNKRLEEMAVQNIPVEEGKKQFD---VVNKGDVVV-LPAFGAAV--- 109 (364)
Q Consensus 40 ~RAi~~a~~~~~~~~~~~vy~lG~iI---HN~~Vv~~L~~~Gv~~v~~~~~~~~~~---~l~~g~~VI-IrAHGv~~--- 109 (364)
...++.+-+.+.+ .++||++|-=. =-.+...+|...|..+....+...... .+.++|.+| |+--|-++
T Consensus 115 ~~~l~~~~~~i~~--a~~I~i~G~G~s~~~A~~~~~~l~~~g~~~~~~~d~~~~~~~~~~~~~~Dv~I~iS~sg~~~~~~ 192 (278)
T PRK11557 115 EEKLHECVTMLRS--ARRIILTGIGASGLVAQNFAWKLMKIGINAVAERDMHALLATVQALSPDDLLLAISYSGERRELN 192 (278)
T ss_pred HHHHHHHHHHHhc--CCeEEEEecChhHHHHHHHHHHHhhCCCeEEEcCChHHHHHHHHhCCCCCEEEEEcCCCCCHHHH
Q ss_pred HHHHHHHhcCCcEE
Q 017886 110 EEMVTLNNKNVQIV 123 (364)
Q Consensus 110 ~v~~~l~~~g~~ii 123 (364)
+..+.++++|++||
T Consensus 193 ~~~~~ak~~ga~iI 206 (278)
T PRK11557 193 LAADEALRVGAKVL 206 (278)
T ss_pred HHHHHHHHcCCCEE
No 364
>PF14258 DUF4350: Domain of unknown function (DUF4350)
Probab=22.59 E-value=3.3e+02 Score=20.29 Aligned_cols=41 Identities=22% Similarity=0.293 Sum_probs=20.5
Q ss_pred HHHHHcCcEEecCCcccccccccc--CCCEEEEcCC-CCC-HHHHHHH
Q 017886 72 KRLEEMAVQNIPVEEGKKQFDVVN--KGDVVVLPAF-GAA-VEEMVTL 115 (364)
Q Consensus 72 ~~L~~~Gv~~v~~~~~~~~~~~l~--~g~~VIIrAH-Gv~-~~v~~~l 115 (364)
+.|+++|+.+..... .++.++ ++..|+|... -.+ |+..+.|
T Consensus 12 ~~L~~~g~~v~~~~~---~~~~l~~~~~tll~i~~~~~~~~~~~~~~l 56 (70)
T PF14258_consen 12 QLLEEQGVKVERWRK---PYEALEADDGTLLVIGPDLRLSEPEEAEAL 56 (70)
T ss_pred HHHHHCCCeeEEecc---cHHHhCCCCCEEEEEeCCCCCCchHHHHHH
Confidence 467778888763221 123332 2334566666 333 3544444
No 365
>TIGR00762 DegV EDD domain protein, DegV family. This family of proteins is related to DegV of Bacillus subtilis and includes paralogous sets in several species (B. subtilis, Deinococcus radiodurans, Mycoplasma pneumoniae) that are closer in percent identity to each than to most homologs from other species. This suggests both recent paralogy and diversity of function. DegV itself is encoded immediately downstream of DegU, a transcriptional regulator of degradation, but is itself uncharacterized. Crystallography suggested a lipid-binding site, while comparison of the crystal structure to dihydroxyacetone kinase and to a mannose transporter EIIA domain suggests a conserved domain, EDD, with phosphotransferase activity.
Probab=22.53 E-value=3.5e+02 Score=26.02 Aligned_cols=43 Identities=14% Similarity=-0.009 Sum_probs=34.9
Q ss_pred HHHHHHHHhcCCcEEeccCchhHHHHHHHHHHhhCCCeEEEEec
Q 017886 109 VEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGK 152 (364)
Q Consensus 109 ~~v~~~l~~~g~~iiDaTCP~V~kv~~~v~~~~~~Gy~iIIiG~ 152 (364)
.+.|+.+++.+. +.=+.||-+..+.+..+++.++|+.||.+.=
T Consensus 44 ~~~y~~~~~~~~-~p~TS~ps~~~~~~~~~~l~~~~~~vi~i~i 86 (275)
T TIGR00762 44 EEFYEKLKESKE-LPKTSQPSPGEFLELYEKLLEEGDEVLSIHL 86 (275)
T ss_pred HHHHHHHHhcCC-CCCcCCCCHHHHHHHHHHHHhCCCeEEEEEc
Confidence 457777765443 4569999999999999999999999998863
No 366
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=22.51 E-value=2.9e+02 Score=28.51 Aligned_cols=88 Identities=11% Similarity=0.117 Sum_probs=47.6
Q ss_pred cceEEEEeCCCCCcccHHHHHHHHHHHHhhCCCCceEEec--ccccCHHHHHHHHHcCcEEecCCccccccccccCCCEE
Q 017886 23 GNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITN--EIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVV 100 (364)
Q Consensus 23 ~~mkI~lA~~~GFC~GV~RAi~~a~~~~~~~~~~~vy~lG--~iIHN~~Vv~~L~~~Gv~~v~~~~~~~~~~~l~~g~~V 100 (364)
.+.+|.+.. .|+ -| +..|+.+.+. +..|.... +--.-+...+.|+++||.+..... .....+-| +
T Consensus 15 ~~~~v~viG-~G~-~G----~~~A~~L~~~--G~~V~~~d~~~~~~~~~~~~~l~~~gv~~~~~~~----~~~~~~~D-~ 81 (480)
T PRK01438 15 QGLRVVVAG-LGV-SG----FAAADALLEL--GARVTVVDDGDDERHRALAAILEALGATVRLGPG----PTLPEDTD-L 81 (480)
T ss_pred CCCEEEEEC-CCH-HH----HHHHHHHHHC--CCEEEEEeCCchhhhHHHHHHHHHcCCEEEECCC----ccccCCCC-E
Confidence 345666553 233 33 3445444442 23455432 111122456779999999875321 11111234 6
Q ss_pred EEcCCCCCHH--HHHHHHhcCCcEE
Q 017886 101 VLPAFGAAVE--EMVTLNNKNVQIV 123 (364)
Q Consensus 101 IIrAHGv~~~--v~~~l~~~g~~ii 123 (364)
||-|-|++|. .+..++++|+.|+
T Consensus 82 Vv~s~Gi~~~~~~~~~a~~~gi~v~ 106 (480)
T PRK01438 82 VVTSPGWRPDAPLLAAAADAGIPVW 106 (480)
T ss_pred EEECCCcCCCCHHHHHHHHCCCeec
Confidence 6778899876 4557788888885
No 367
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=22.46 E-value=5.4e+02 Score=24.21 Aligned_cols=48 Identities=15% Similarity=0.172 Sum_probs=32.7
Q ss_pred HHHhhhhCCCEEEEEcCC--CCchhHHHHHHHHhh-CCCeE-EeCCCCccCC
Q 017886 274 MYKMVEEKVDLILVVGGW--NSSNTSHLQEIAEDR-GIPSY-WIDSEKRIGP 321 (364)
Q Consensus 274 ~~eLa~~~vD~miVVGGk--nSSNT~rL~eia~~~-~~~t~-~Ie~~~eL~~ 321 (364)
++.++..-.|+++|=|.- ...|+..|++..++. ..|.+ +..+.+-+.+
T Consensus 17 a~~v~~~gtDaI~VGGS~gvt~~~~~~~v~~ik~~~~lPvilfp~~~~~i~~ 68 (205)
T TIGR01769 17 AKNAKDAGTDAIMVGGSLGIVESNLDQTVKKIKKITNLPVILFPGNVNGLSR 68 (205)
T ss_pred HHHHHhcCCCEEEEcCcCCCCHHHHHHHHHHHHhhcCCCEEEECCCccccCc
Confidence 334543237998766663 668999999999984 46776 6666666655
No 368
>COG2871 NqrF Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF [Energy production and conversion]
Probab=22.34 E-value=60 Score=32.90 Aligned_cols=24 Identities=21% Similarity=0.409 Sum_probs=22.7
Q ss_pred ceEEecccccCHHHHHHHHHcCcE
Q 017886 57 KIWITNEIIHNPTVNKRLEEMAVQ 80 (364)
Q Consensus 57 ~vy~lG~iIHN~~Vv~~L~~~Gv~ 80 (364)
.-|+-||-+||..|++.|+..||.
T Consensus 376 eyYmCGPp~mNasvikmL~dlGVE 399 (410)
T COG2871 376 EYYMCGPPLMNASVIKMLKDLGVE 399 (410)
T ss_pred eEEeeCcchhhHHHHHHHHhcCcc
Confidence 489999999999999999999986
No 369
>PF01248 Ribosomal_L7Ae: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family; InterPro: IPR004038 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, ribosomal protein L30 from eukaryotes and archaebacteria, Gadd45 and MyD118 [].; PDB: 2CZW_A 3V7E_B 2QEX_F 1YJ9_F 1VQ8_F 1YJN_F 3I56_F 1VQ6_F 2OTJ_F 1YIJ_F ....
Probab=22.31 E-value=82 Score=25.11 Aligned_cols=41 Identities=20% Similarity=0.500 Sum_probs=32.1
Q ss_pred hCCCEEEEEcCCCCchhHH-HHHHHHhhCCCeEEeCCCCccC
Q 017886 280 EKVDLILVVGGWNSSNTSH-LQEIAEDRGIPSYWIDSEKRIG 320 (364)
Q Consensus 280 ~~vD~miVVGGknSSNT~r-L~eia~~~~~~t~~Ie~~~eL~ 320 (364)
++.-++|+-.+-+.....+ |-.+|++++.|.+++.|..||-
T Consensus 30 ~~~~lvilA~d~~~~~~~~~l~~~c~~~~Ip~~~~~s~~eLG 71 (95)
T PF01248_consen 30 GKAKLVILAEDCSPDSIKKHLPALCEEKNIPYVFVPSKEELG 71 (95)
T ss_dssp TCESEEEEETTSSSGHHHHHHHHHHHHTTEEEEEESHHHHHH
T ss_pred CCCcEEEEcCCCChhhhcccchhheeccceeEEEECCHHHHH
Confidence 4566777766666666667 7789999999999999888874
No 370
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=22.25 E-value=2.1e+02 Score=26.61 Aligned_cols=59 Identities=20% Similarity=0.357 Sum_probs=36.2
Q ss_pred CCCEEEEEcCCCCchhHHHHHHHHhhCCCeEEeCCCCccCCCCcchhhhccchhhhhcccCC----CCCCEEEEEeCCCC
Q 017886 281 KVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLP----KGQITIGITSGAST 356 (364)
Q Consensus 281 ~vD~miVVGGknSSNT~rL~eia~~~~~~t~~Ie~~~eL~~~~~~~~~~~~~~~~~~~~wl~----~~~~~VGITAGAST 356 (364)
..|++|.--|-..-| .++++.|++.+.+..-+++++. .. -.|| .+.-+|+|++|...
T Consensus 69 ~~~lVi~at~d~~ln-~~i~~~a~~~~ilvn~~d~~e~-~~-----------------f~~pa~~~~g~l~iaisT~G~s 129 (205)
T TIGR01470 69 GAFLVIAATDDEELN-RRVAHAARARGVPVNVVDDPEL-CS-----------------FIFPSIVDRSPVVVAISSGGAA 129 (205)
T ss_pred CcEEEEECCCCHHHH-HHHHHHHHHcCCEEEECCCccc-Ce-----------------EEEeeEEEcCCEEEEEECCCCC
Confidence 356544433332233 6899999988876655554432 21 1222 46789999999888
Q ss_pred CH
Q 017886 357 PD 358 (364)
Q Consensus 357 P~ 358 (364)
|-
T Consensus 130 P~ 131 (205)
T TIGR01470 130 PV 131 (205)
T ss_pred cH
Confidence 84
No 371
>cd08177 MAR Maleylacetate reductase is involved in many aromatic compounds degradation pathways of aerobic microbes. Maleylacetate reductases (MAR) play an important role in the degradation of aromatic compounds in aerobic microbes. In fungi and yeasts, the enzymes are involved in the catabolism of compounds such as phenol, tyrosine, benzoate, 4-hydroxybenzoate and resorcinol. In bacteria, the enzymes contribute to the degradation of resorcinol, 2,4-dihydroxybenzoate ([beta]-resorcylate) and 2,6-dihydroxybenzoate ([gamma]-resorcylate) via hydroxyquinol and maleylacetate. Maleylacetate reductases catalyze NADH- or NADPH-dependent reduction, at the carbon-carbon double bond, of maleylacetate or 2-chloromaleylacetate to 3-oxoadipate. In the case of 2-chloromaleylacetate, Maleylacetate reductases initially catalyses the NAD(P)H-dependent dechlorination to maleylacetate, which is then reduced to 3-oxoadipate. This enzyme is a homodimer. It is inhibited by thiol-blocking reagents such as p-
Probab=22.19 E-value=2.3e+02 Score=28.03 Aligned_cols=36 Identities=19% Similarity=0.308 Sum_probs=28.3
Q ss_pred hCCCEEEEEcCCCCchhHHHHHHHHhhCCCeEEeCCCC
Q 017886 280 EKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEK 317 (364)
Q Consensus 280 ~~vD~miVVGGknSSNT~rL~eia~~~~~~t~~Ie~~~ 317 (364)
..+|++|-|||=..-.+-|.+-.. .+.|-..|-|..
T Consensus 76 ~~~d~IIaiGGGs~iD~aK~ia~~--~~~p~i~IPTta 111 (337)
T cd08177 76 AGADGIVAIGGGSTIDLAKAIALR--TGLPIIAIPTTL 111 (337)
T ss_pred cCCCEEEEeCCcHHHHHHHHHHHH--hcCCEEEEcCCc
Confidence 579999999999999999977654 367777777653
No 372
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=22.15 E-value=1.1e+02 Score=26.11 Aligned_cols=23 Identities=26% Similarity=0.476 Sum_probs=18.3
Q ss_pred EEEEEcCC-CCchhHHHHHHHHhh
Q 017886 284 LILVVGGW-NSSNTSHLQEIAEDR 306 (364)
Q Consensus 284 ~miVVGGk-nSSNT~rL~eia~~~ 306 (364)
++++.|+. ..|||.+|++.+.+.
T Consensus 3 ilii~gS~r~~~~t~~l~~~~~~~ 26 (152)
T PF03358_consen 3 ILIINGSPRKNSNTRKLAEAVAEQ 26 (152)
T ss_dssp EEEEESSSSTTSHHHHHHHHHHHH
T ss_pred EEEEECcCCCCCHHHHHHHHHHHH
Confidence 57788885 689999999887663
No 373
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=22.08 E-value=1.4e+02 Score=24.69 Aligned_cols=41 Identities=24% Similarity=0.247 Sum_probs=30.8
Q ss_pred hCCCEEEEEcC-CCCchhHHHHHHHHhhCCCeEEeCCCCccC
Q 017886 280 EKVDLILVVGG-WNSSNTSHLQEIAEDRGIPSYWIDSEKRIG 320 (364)
Q Consensus 280 ~~vD~miVVGG-knSSNT~rL~eia~~~~~~t~~Ie~~~eL~ 320 (364)
.+-|++|+|-- -+|..+.+.++.|++.|.++.-|.+..+|.
T Consensus 42 ~~~dl~I~iS~SG~t~e~i~~~~~a~~~g~~iI~IT~~~~l~ 83 (119)
T cd05017 42 DRKTLVIAVSYSGNTEETLSAVEQAKERGAKIVAITSGGKLL 83 (119)
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEeCCchHH
Confidence 45688888875 466777888888888888888887655543
No 374
>PRK05333 NAD-dependent deacetylase; Provisional
Probab=22.04 E-value=1.9e+02 Score=28.26 Aligned_cols=58 Identities=17% Similarity=0.184 Sum_probs=38.1
Q ss_pred ccccccccccHHHHHHHHHHHHhhhhCCCEEEEEcCCCCchhH-HHHHHHHhhCCCeEEeCC
Q 017886 255 EHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTS-HLQEIAEDRGIPSYWIDS 315 (364)
Q Consensus 255 ~~~~v~nTIC~AT~~RQ~a~~eLa~~~vD~miVVGGknSSNT~-rL~eia~~~~~~t~~Ie~ 315 (364)
+++..|+.-=. ....+.+.+.+ .++|++||||-..+-... .|.+.+.+.|.+.+.|.-
T Consensus 191 P~Vv~FgE~lp-~~~~~~a~~~~--~~~DlllvvGTSl~V~p~~~~~~~a~~~g~~~i~IN~ 249 (285)
T PRK05333 191 PDVVFFGENVP-RERVAAARAAL--DAADAVLVVGSSLMVYSGYRFCVWAAQQGKPIAALNL 249 (285)
T ss_pred CCEEEcCCCCC-HHHHHHHHHHH--hcCCEEEEECcCceecchhhhHHHHHHCCCeEEEECC
Confidence 34555555322 22344455555 369999999987777655 678888888887776664
No 375
>cd06317 PBP1_ABC_sugar_binding_like_8 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Pperiplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=22.02 E-value=5.9e+02 Score=22.95 Aligned_cols=87 Identities=17% Similarity=0.203 Sum_probs=47.6
Q ss_pred EEEEEcCCC-ChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHHHH-HHHhhhhCCCEEEEEcCCCCchhH
Q 017886 220 VGIANQTTM-LKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDA-MYKMVEEKVDLILVVGGWNSSNTS 297 (364)
Q Consensus 220 v~vvsQTT~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ~a-~~eLa~~~vD~miVVGGknSSNT~ 297 (364)
|+++.-+ + +-.-|..+.+-+.....+. +-++.++++ ..-.++|.+ ++.+.+..+|.+|+.+...+. ..
T Consensus 2 i~vi~p~-~~~~~~~~~~~~g~~~~~~~~------g~~~~~~~~--~~~~~~~~~~~~~l~~~~vdgiii~~~~~~~-~~ 71 (275)
T cd06317 2 IGYTQNN-VGSHSYQTTYNKAFQAAAEED------GVEVIVLDA--NGDVARQAAQVEDLIAQKVDGIILWPTDGQA-YI 71 (275)
T ss_pred eEEEecc-cCCCHHHHHHHHHHHHHHHhc------CCEEEEEcC--CcCHHHHHHHHHHHHHcCCCEEEEecCCccc-cH
Confidence 3444433 3 4556777777776543332 223444433 223334433 444444689999997754322 23
Q ss_pred HHHHHHHhhCCCeEEeCCC
Q 017886 298 HLQEIAEDRGIPSYWIDSE 316 (364)
Q Consensus 298 rL~eia~~~~~~t~~Ie~~ 316 (364)
...+.+++.+.|...+...
T Consensus 72 ~~l~~~~~~~iPvV~~~~~ 90 (275)
T cd06317 72 PGLRKAKQAGIPVVITNSN 90 (275)
T ss_pred HHHHHHHHCCCcEEEeCCC
Confidence 3345566788998888764
No 376
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=22.00 E-value=2.7e+02 Score=20.81 Aligned_cols=71 Identities=17% Similarity=0.241 Sum_probs=45.0
Q ss_pred eEEEEeCCCCCcccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHHcCcEEecCCccccccccccCCCEEEEcC
Q 017886 25 VKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPA 104 (364)
Q Consensus 25 mkI~lA~~~GFC~GV~RAi~~a~~~~~~~~~~~vy~lG~iIHN~~Vv~~L~~~Gv~~v~~~~~~~~~~~l~~g~~VIIrA 104 (364)
|+++-....++|.-++++++. . +-=|..-+|-=++...+.|++.|...+.- + +-+|+. .-
T Consensus 1 v~ly~~~~Cp~C~~ak~~L~~-------~--~i~~~~~di~~~~~~~~~~~~~g~~~vP~------v--~~~g~~---~~ 60 (72)
T TIGR02194 1 ITVYSKNNCVQCKMTKKALEE-------H--GIAFEEINIDEQPEAIDYVKAQGFRQVPV------I--VADGDL---SW 60 (72)
T ss_pred CEEEeCCCCHHHHHHHHHHHH-------C--CCceEEEECCCCHHHHHHHHHcCCcccCE------E--EECCCc---EE
Confidence 467777888999888887752 1 23456667767888889998888755531 0 112331 23
Q ss_pred CCCCHHHHHHH
Q 017886 105 FGAAVEEMVTL 115 (364)
Q Consensus 105 HGv~~~v~~~l 115 (364)
-|..|+.+++|
T Consensus 61 ~G~~~~~~~~~ 71 (72)
T TIGR02194 61 SGFRPDKLKAL 71 (72)
T ss_pred eccCHHHHHhc
Confidence 46777766654
No 377
>PRK10423 transcriptional repressor RbsR; Provisional
Probab=21.68 E-value=6.3e+02 Score=23.75 Aligned_cols=88 Identities=14% Similarity=0.251 Sum_probs=48.6
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHH-HHHHHhhhhCCCEEEEEcCCCCchh
Q 017886 218 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSNT 296 (364)
Q Consensus 218 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ-~a~~eLa~~~vD~miVVGGknSSNT 296 (364)
..|+++..+ ++-.-|..+.+-+.+...+. + -++.+++ +.-..++| +.+..|.+..+|.+|+.+...+...
T Consensus 57 ~~Igvi~~~-~~~~~~~~~~~gi~~~~~~~-g-----~~~~~~~--~~~~~~~~~~~~~~l~~~~vdGiI~~~~~~~~~~ 127 (327)
T PRK10423 57 RTIGMLITA-STNPFYSELVRGVERSCFER-G-----YSLVLCN--TEGDEQRMNRNLETLMQKRVDGLLLLCTETHQPS 127 (327)
T ss_pred CeEEEEeCC-CCCCcHHHHHHHHHHHHHHc-C-----CEEEEEe--CCCCHHHHHHHHHHHHHcCCCEEEEeCCCcchhh
Confidence 468887753 33445666776665543322 1 1222222 22233455 4455565568999999987655444
Q ss_pred HHHHHHHHhhCCCeEEeCCC
Q 017886 297 SHLQEIAEDRGIPSYWIDSE 316 (364)
Q Consensus 297 ~rL~eia~~~~~~t~~Ie~~ 316 (364)
..+++ +..+.|...++..
T Consensus 128 ~~~l~--~~~~iPvV~i~~~ 145 (327)
T PRK10423 128 REIMQ--RYPSVPTVMMDWA 145 (327)
T ss_pred HHHHH--hcCCCCEEEECCc
Confidence 33332 2247899888763
No 378
>PLN02621 nicotinamidase
Probab=21.68 E-value=6.1e+02 Score=22.98 Aligned_cols=119 Identities=13% Similarity=0.043 Sum_probs=58.8
Q ss_pred EEEEeCCCCCcccHHHHHHHHHHHHhhC--CCCc-eEEecccccC-HHHHHHHHHc--CcEEecCCcccc---ccccccC
Q 017886 26 KVKLAESYGFCWGVERAVQIAYEARKQF--PEEK-IWITNEIIHN-PTVNKRLEEM--AVQNIPVEEGKK---QFDVVNK 96 (364)
Q Consensus 26 kI~lA~~~GFC~GV~RAi~~a~~~~~~~--~~~~-vy~lG~iIHN-~~Vv~~L~~~--Gv~~v~~~~~~~---~~~~l~~ 96 (364)
=|++--..|||.+....++-+.+.++.+ .+-+ ||+. -.|- |.-...|... +-.++.+..+.+ +|..+.+
T Consensus 23 LlvID~Q~~f~~~~~~~v~~i~~Ll~~ar~~~~pVi~t~--~~~~~~~~~~~~~~~~~~~~~~~gs~g~~i~~~L~~~~~ 100 (197)
T PLN02621 23 LLVIDMQNYFSSMAEPILPALLTTIDLCRRASIPVFFTR--HSHKSPSDYGMLGEWWDGDLILDGTTEAELMPEIGRVTG 100 (197)
T ss_pred EEEEeChhhhhhhHHHHHHHHHHHHHHHHHCCCcEEEEe--ccCCCcchhhhhhhhcCCccccCCCCccccchhccCCCC
Confidence 3566667799977766665555544331 1234 4443 2331 1111222110 001222211111 2333223
Q ss_pred CCEEEEcCCCCC----HHHHHHHHhcCCcE-----Eecc-CchhHHHHHHHHHHhhCCCeEEEEec
Q 017886 97 GDVVVLPAFGAA----VEEMVTLNNKNVQI-----VDTT-CPWVSKVWTSVEKHKKGDYTSIIHGK 152 (364)
Q Consensus 97 g~~VIIrAHGv~----~~v~~~l~~~g~~i-----iDaT-CP~V~kv~~~v~~~~~~Gy~iIIiG~ 152 (364)
++.+| .-+..+ .+..+.|+++|+.- +.+. | |...++.+.+.||+++++-|
T Consensus 101 ~~~vi-~K~~~saf~~t~L~~~L~~~gi~~lvi~Gv~T~~C-----V~~Ta~~a~~~gy~v~v~~D 160 (197)
T PLN02621 101 PDEVV-EKSTYSAFYNTRLEERLRKIGVKEVIVTGVMTNLC-----CETTAREAFVRGFRVFFSTD 160 (197)
T ss_pred CCEEE-ECCCcCCCCCCcHHHHHHHCCCCEEEEEecccchh-----HHHHHHHHHHCCCEEEEecc
Confidence 55554 333332 36677888888762 2222 3 44457888899999999874
No 379
>PRK10703 DNA-binding transcriptional repressor PurR; Provisional
Probab=21.67 E-value=7e+02 Score=23.70 Aligned_cols=87 Identities=25% Similarity=0.257 Sum_probs=48.1
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHH-HHHHHhhhhCCCEEEEEcCCCCchh
Q 017886 218 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSNT 296 (364)
Q Consensus 218 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ-~a~~eLa~~~vD~miVVGGknSSNT 296 (364)
..++++.- .++-.-|..+.+-+.+...+. + -++.++. +....++| +.+..|....+|.+|+.++..+
T Consensus 60 ~~i~vi~~-~~~~~~~~~~~~gi~~~~~~~-g-----~~~~~~~--~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~--- 127 (341)
T PRK10703 60 KSIGLLAT-SSEAPYFAEIIEAVEKNCYQK-G-----YTLILCN--AWNNLEKQRAYLSMLAQKRVDGLLVMCSEYP--- 127 (341)
T ss_pred CeEEEEeC-CCCCchHHHHHHHHHHHHHHC-C-----CEEEEEe--CCCCHHHHHHHHHHHHHcCCCEEEEecCCCC---
Confidence 46777763 344455677777666532222 1 1222222 12223445 3344455567999999986432
Q ss_pred HHHHHHHHh-hCCCeEEeCCC
Q 017886 297 SHLQEIAED-RGIPSYWIDSE 316 (364)
Q Consensus 297 ~rL~eia~~-~~~~t~~Ie~~ 316 (364)
....+.+++ .+.|.+.++..
T Consensus 128 ~~~~~~l~~~~~iPvV~~d~~ 148 (341)
T PRK10703 128 EPLLAMLEEYRHIPMVVMDWG 148 (341)
T ss_pred HHHHHHHHhcCCCCEEEEecc
Confidence 233444556 68899999764
No 380
>PF09152 DUF1937: Domain of unknown function (DUF1937); InterPro: IPR015235 This entry is represented by Bacteriophage N15, Gp57. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry represents a set of hypothetical bacterial and phage proteins whose exact function has not, as yet, been described. ; PDB: 1T1J_A.
Probab=21.58 E-value=87 Score=27.22 Aligned_cols=36 Identities=25% Similarity=0.368 Sum_probs=28.1
Q ss_pred hhhhCCCEEEEE---cCCCCchhHHHHHHHHhhCCCeEEe
Q 017886 277 MVEEKVDLILVV---GGWNSSNTSHLQEIAEDRGIPSYWI 313 (364)
Q Consensus 277 La~~~vD~miVV---GGknSSNT~rL~eia~~~~~~t~~I 313 (364)
+. ..||.+||. |=..|+=.++=.+.+++.|.|.|+.
T Consensus 76 ~L-~~c~~lvV~~i~GW~~S~Gi~~Ei~~a~~~~~~V~~~ 114 (116)
T PF09152_consen 76 FL-DACDELVVLDIPGWDDSEGIWAEIEAAEEMGMPVFLY 114 (116)
T ss_dssp HH-HH-SEEEE---TTGGG-HHHHHHHHHHHHTT-EEEEH
T ss_pred HH-HhcceeEEecCCCccccccHHHHHHHHHHcCCeEEEe
Confidence 55 479999999 7799999999999999999999864
No 381
>KOG2244 consensus Highly conserved protein containing a thioredoxin domain [General function prediction only]
Probab=21.55 E-value=93 Score=34.04 Aligned_cols=42 Identities=17% Similarity=0.261 Sum_probs=33.7
Q ss_pred hCCCEEEEEcCCCCchhHHHHHHHHhh---CCCeEEeC--CCCccCC
Q 017886 280 EKVDLILVVGGWNSSNTSHLQEIAEDR---GIPSYWID--SEKRIGP 321 (364)
Q Consensus 280 ~~vD~miVVGGknSSNT~rL~eia~~~---~~~t~~Ie--~~~eL~~ 321 (364)
...+.+++||++.|.-|+++.+.|.+. +.-..||+ +++|+-.
T Consensus 698 ~glk~vvlvGd~~s~d~~~~vs~~~s~yipn~~vihidpsd~ee~s~ 744 (786)
T KOG2244|consen 698 PGLKQVVLVGDKSSPDLTNMVSAAHSVYIPNKTVIHIDPSDEEEFSE 744 (786)
T ss_pred cCcceEEEECCCCChHHHHHHHHHHHhcCCcceEEEeCCCCHHHHHh
Confidence 346899999999999999999999984 34468999 6665543
No 382
>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]
Probab=21.33 E-value=1.2e+02 Score=33.15 Aligned_cols=154 Identities=16% Similarity=0.171 Sum_probs=103.4
Q ss_pred ccchHHHHHHHcCCc-------ccccceEEEEeCCCCCcccHHHH------HHHHHHHHhhCCCCceE-EecccccCHHH
Q 017886 5 YTSDIIKKLKENGFE-------YTWGNVKVKLAESYGFCWGVERA------VQIAYEARKQFPEEKIW-ITNEIIHNPTV 70 (364)
Q Consensus 5 y~~~~~~~~~~~~~~-------~~~~~mkI~lA~~~GFC~GV~RA------i~~a~~~~~~~~~~~vy-~lG~iIHN~~V 70 (364)
--|++|.+.|..|.. .+...|-|..|.- -|+-|=-.| ++....+.++-+..-|+ =||=|--|+..
T Consensus 13 IAcRVIRtar~lGi~tVAVYSdaDa~A~hV~~ADE-Av~iGpapaaeSYL~~dkIi~Aa~~tGA~AIHPGYGFLSENa~F 91 (645)
T COG4770 13 IACRVIRTARDLGIRTVAVYSDADADALHVRMADE-AVHIGPAPAAESYLDIDKIIDAARRTGAQAIHPGYGFLSENADF 91 (645)
T ss_pred hhHHHHHHHHHcCCceEEEEecCCCCchhhhhcch-hhhcCCCchhhhhccHHHHHHHHHHhCcccccCCccccccCHHH
Confidence 357899999998832 2334466666643 244442222 11122222221111122 26888899999
Q ss_pred HHHHHHcCcEEecCCccccccccccCCCEEEEcCCCCCHHHHHHHHhcCCcEEeccCchhHHHHHHHHHHhhCCCeEEEE
Q 017886 71 NKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIH 150 (364)
Q Consensus 71 v~~L~~~Gv~~v~~~~~~~~~~~l~~g~~VIIrAHGv~~~v~~~l~~~g~~iiDaTCP~V~kv~~~v~~~~~~Gy~iIIi 150 (364)
.+.+++.|+.+|-. +.++ ||+-|--..-+..+.+.|+.+|=.+=--+...-..++...+=||.|.|
T Consensus 92 A~a~~~aGlvfIGP----------~~~a---I~aMGdK~~AK~l~~~AgVp~VPG~~g~~qd~~~~~~~A~eiGyPVlI- 157 (645)
T COG4770 92 AQAVEDAGLVFIGP----------SAGA---IRAMGDKIAAKKLAAEAGVPTVPGYHGPIQDAAELVAIAEEIGYPVLI- 157 (645)
T ss_pred HHHHHHCCcEEECC----------CHHH---HHHhccHHHHHHHHHHcCCCccCCCCCcccCHHHHHHHHHhcCCcEEE-
Confidence 99999999999963 2233 888888888889999999999988888888888888888888999987
Q ss_pred ecCCCceeeeecccCCc-EEEEcChhhHHHhh
Q 017886 151 GKYSHEETVATASFAGK-YIIVKNMKEAEYVC 181 (364)
Q Consensus 151 G~~~HpEv~gi~g~~~~-~~vv~~~~e~~~~~ 181 (364)
++-.|=.++ .-++.+++|+....
T Consensus 158 --------KAsaGGGGKGMRvv~~~~e~~e~l 181 (645)
T COG4770 158 --------KASAGGGGKGMRVVETPEEFAEAL 181 (645)
T ss_pred --------EeccCCCCCceEeecCHHHHHHHH
Confidence 344443343 46888888876543
No 383
>TIGR00824 EIIA-man PTS system, mannose/fructose/sorbose family, IIA component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IIA components.
Probab=21.22 E-value=74 Score=26.86 Aligned_cols=33 Identities=0% Similarity=0.097 Sum_probs=26.6
Q ss_pred eEEEEeCCCCCcccHHHHHHHHHHHHhhCCCCceEEec
Q 017886 25 VKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITN 62 (364)
Q Consensus 25 mkI~lA~~~GFC~GV~RAi~~a~~~~~~~~~~~vy~lG 62 (364)
++|++|.|-+||-|...|+++..- +...|++++
T Consensus 2 ~~ili~sHG~~A~gl~~s~~~i~G-----~~~~i~~i~ 34 (116)
T TIGR00824 2 IAIIISGHGQAAIALLKSAEMIFG-----EQNNVGAVP 34 (116)
T ss_pred cEEEEEecHHHHHHHHHHHHHHcC-----CcCCeEEEE
Confidence 479999999999999999998732 123588888
No 384
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=21.20 E-value=1.6e+02 Score=26.10 Aligned_cols=39 Identities=23% Similarity=0.290 Sum_probs=32.8
Q ss_pred hCCCEEEEEcC-CCCchhHHHHHHHHhhCCCeEEeCCCCc
Q 017886 280 EKVDLILVVGG-WNSSNTSHLQEIAEDRGIPSYWIDSEKR 318 (364)
Q Consensus 280 ~~vD~miVVGG-knSSNT~rL~eia~~~~~~t~~Ie~~~e 318 (364)
.+-|++|+|.- .+|.++..+++.|++.|.+++.|.+..+
T Consensus 74 ~~~D~vI~iS~sG~t~~~i~~~~~ak~~g~~iI~IT~~~~ 113 (179)
T cd05005 74 GPGDLLIAISGSGETSSVVNAAEKAKKAGAKVVLITSNPD 113 (179)
T ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHCCCeEEEEECCCC
Confidence 46799999875 6788899999999999999999987543
No 385
>PF08485 Polysacc_syn_2C: Polysaccharide biosynthesis protein C-terminal; InterPro: IPR013692 This domain is found to the C terminus of the IPR003869 from INTERPRO domain in bacterial polysaccharide biosynthesis enzymes including the capsule protein CapD [] and several putative epimerases/dehydratases. ; GO: 0003978 UDP-glucose 4-epimerase activity, 0009103 lipopolysaccharide biosynthetic process
Probab=21.17 E-value=29 Score=25.64 Aligned_cols=12 Identities=50% Similarity=0.659 Sum_probs=10.0
Q ss_pred EcCCCCchhHHH
Q 017886 288 VGGWNSSNTSHL 299 (364)
Q Consensus 288 VGGknSSNT~rL 299 (364)
+-..||.||.+|
T Consensus 21 ~~dYnShNT~rL 32 (48)
T PF08485_consen 21 VEDYNSHNTERL 32 (48)
T ss_pred ccccCCCCcccc
Confidence 457899999987
No 386
>cd01465 vWA_subgroup VWA subgroup: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if n
Probab=21.16 E-value=1.2e+02 Score=25.80 Aligned_cols=30 Identities=17% Similarity=0.209 Sum_probs=26.3
Q ss_pred CCchhHHHHHHHHhhCCCeEEeCCCCccCC
Q 017886 292 NSSNTSHLQEIAEDRGIPSYWIDSEKRIGP 321 (364)
Q Consensus 292 nSSNT~rL~eia~~~~~~t~~Ie~~~eL~~ 321 (364)
...|...|-++|+..+-..|+|++++||+.
T Consensus 139 ~~~~~~~l~~ia~~~~g~~~~~~~~~~~~~ 168 (170)
T cd01465 139 DNYNEDLMEAIADAGNGNTAYIDNLAEARK 168 (170)
T ss_pred CCcCHHHHHHHHhcCCceEEEeCCHHHHHh
Confidence 678999999999887778999999999874
No 387
>COG2515 Acd 1-aminocyclopropane-1-carboxylate deaminase [Amino acid transport and metabolism]
Probab=21.03 E-value=2.4e+02 Score=28.64 Aligned_cols=40 Identities=15% Similarity=0.331 Sum_probs=34.7
Q ss_pred hhhhCCCEEEEEcCCCCchhHHHHHHHHhhCCCe-EEeCCCC
Q 017886 277 MVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPS-YWIDSEK 317 (364)
Q Consensus 277 La~~~vD~miVVGGknSSNT~rL~eia~~~~~~t-~~Ie~~~ 317 (364)
+. +-.|-+|-+||-.|+-++..+-+|+..|-.+ +.+|+..
T Consensus 60 l~-~g~dTlvT~GgiQSNh~r~tAavA~~lGl~~v~ile~~~ 100 (323)
T COG2515 60 LR-KGADTLVTYGGIQSNHVRQTAAVAAKLGLKCVLILENIE 100 (323)
T ss_pred hh-cCCcEEEEecccchhHHHHHHHHHHhcCCcEEEEEeccc
Confidence 54 6789999999999999999999999999764 6677777
No 388
>COG0773 MurC UDP-N-acetylmuramate-alanine ligase [Cell envelope biogenesis, outer membrane]
Probab=20.94 E-value=4.4e+02 Score=28.07 Aligned_cols=91 Identities=16% Similarity=0.264 Sum_probs=57.1
Q ss_pred ecccccCHHHHHHHHHcCcEEecCCccccccccccCCCEEEEcC-CCCCHHHHHHHHhcCCcEEeccCchhHHHHHHHHH
Q 017886 61 TNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPA-FGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEK 139 (364)
Q Consensus 61 lG~iIHN~~Vv~~L~~~Gv~~v~~~~~~~~~~~l~~g~~VIIrA-HGv~~~v~~~l~~~g~~iiDaTCP~V~kv~~~v~~ 139 (364)
=.++-=++ +.++|+++|+.+...- +-+.+.+++.||+++ -=-.-.++..++++|+ |++.+.+=++.-
T Consensus 36 GSD~~~~~-~t~~L~~~G~~i~~gh----~~~ni~~~~~VV~s~Ai~~~NpEi~~A~e~~i-------pi~~r~e~Lael 103 (459)
T COG0773 36 GSDLAESP-MTQRLEALGIEIFIGH----DAENILDADVVVVSNAIKEDNPEIVAALERGI-------PVISRAEMLAEL 103 (459)
T ss_pred CccccccH-HHHHHHHCCCeEeCCC----CHHHcCCCceEEEecccCCCCHHHHHHHHcCC-------CeEcHHHHHHHH
Confidence 34555566 8999999999998752 122345566565543 2233347778888875 555777777665
Q ss_pred HhhCCCeEEEEecCCCceeeeeccc
Q 017886 140 HKKGDYTSIIHGKYSHEETVATASF 164 (364)
Q Consensus 140 ~~~~Gy~iIIiG~~~HpEv~gi~g~ 164 (364)
+ +.-+.|-|-|-++-=-+-++.+|
T Consensus 104 m-~~~~~iaVaGTHGKTTTTsmla~ 127 (459)
T COG0773 104 M-RFRTSIAVAGTHGKTTTTSMLAW 127 (459)
T ss_pred H-hCCeeEEEeCCCCchhHHHHHHH
Confidence 5 34566667776665555555554
No 389
>PRK09330 cell division protein FtsZ; Validated
Probab=20.93 E-value=2.3e+02 Score=29.32 Aligned_cols=43 Identities=21% Similarity=0.426 Sum_probs=34.2
Q ss_pred HHHHHhhhhCCCEEEEE----cCCCCchhHHHHHHHHhhCCCeEEeCC
Q 017886 272 DAMYKMVEEKVDLILVV----GGWNSSNTSHLQEIAEDRGIPSYWIDS 315 (364)
Q Consensus 272 ~a~~eLa~~~vD~miVV----GGknSSNT~rL~eia~~~~~~t~~Ie~ 315 (364)
+.++++. ..+|.++|+ ||..|.=+--++++|++.+..++-|=+
T Consensus 89 e~I~~~l-~~~D~vfI~AGmGGGTGTGaapvIA~iake~g~ltvaVvt 135 (384)
T PRK09330 89 EEIREAL-EGADMVFITAGMGGGTGTGAAPVVAEIAKELGILTVAVVT 135 (384)
T ss_pred HHHHHHH-cCCCEEEEEecCCCcccHHHHHHHHHHHHHcCCcEEEEEe
Confidence 4556666 579999998 567788888999999999988876655
No 390
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=20.86 E-value=2.9e+02 Score=28.15 Aligned_cols=79 Identities=18% Similarity=0.316 Sum_probs=57.4
Q ss_pred CCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHH--HHHHHHhhhhCCCEEEEEcCCCCchhHHHHHHHH
Q 017886 227 TMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQER--QDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAE 304 (364)
Q Consensus 227 T~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~R--Q~a~~eLa~~~vD~miVVGGknSSNT~rL~eia~ 304 (364)
.|+.+++.+.++++.++ + ..-+...||+|...... ++.++.|..-.+|++|| ++ --|..+++
T Consensus 45 nfs~~~l~e~i~~ah~~-----g----kk~~V~~N~~~~~~~~~~~~~~l~~l~e~GvDaviv-~D------pg~i~l~~ 108 (347)
T COG0826 45 NFSVEDLAEAVELAHSA-----G----KKVYVAVNTLLHNDELETLERYLDRLVELGVDAVIV-AD------PGLIMLAR 108 (347)
T ss_pred cCCHHHHHHHHHHHHHc-----C----CeEEEEeccccccchhhHHHHHHHHHHHcCCCEEEE-cC------HHHHHHHH
Confidence 68999999999988652 1 12345779999888777 78888888667898775 33 45788888
Q ss_pred hhCCC-eEEeCCCCccCC
Q 017886 305 DRGIP-SYWIDSEKRIGP 321 (364)
Q Consensus 305 ~~~~~-t~~Ie~~~eL~~ 321 (364)
+.+|+ .+|+.+...+..
T Consensus 109 e~~p~l~ih~S~q~~v~N 126 (347)
T COG0826 109 ERGPDLPIHVSTQANVTN 126 (347)
T ss_pred HhCCCCcEEEeeeEecCC
Confidence 88754 466766665554
No 391
>cd06351 PBP1_iGluR_N_LIVBP_like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NMDA, AMPA, and kainate receptor subtypes of ionotropic glutamate receptors (iGluRs). N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NMDA, AMPA, and kainate receptor subtypes of ionotropic glutamate receptors (iGluRs). While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Glutamate mediates the majority of excitatory synaptic transmission in the central nervous system via two broad classes of ionotropic receptors characterized by their response to glutamate agonists: N-methyl-aspartate (NMDA) and non-NMDA receptors
Probab=20.81 E-value=1.7e+02 Score=27.29 Aligned_cols=38 Identities=21% Similarity=0.265 Sum_probs=31.2
Q ss_pred CCCEEEEEcCCCCchhHHHHHHHHhhCCCeEEeCCCCc
Q 017886 281 KVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKR 318 (364)
Q Consensus 281 ~vD~miVVGGknSSNT~rL~eia~~~~~~t~~Ie~~~e 318 (364)
.-.++.|+|+..|+.+.-+..+|...+.|.+-......
T Consensus 61 ~~~v~ai~G~~~s~~~~~v~~~~~~~~iP~is~~~~~~ 98 (328)
T cd06351 61 SQGVAAIFGPTSSESASAVQSICDALEIPHISISGGSE 98 (328)
T ss_pred ccCcEEEECCCCHHHHHHHHHHhccCCCCeEEeecCcc
Confidence 34688899999999999999999999999876655444
No 392
>cd01544 PBP1_GalR Ligand-binding domain of DNA transcription repressor GalR which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand-binding domain of DNA transcription repressor GalR which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalR is a dimeric protein like GalS and is exclusively involved in the regulation of galactose permease, the low-affinity galactose transporter. GalS is involved in regulating expression of the high-affinity galactose transporter encoded by the mgl operon. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are structurally homologous to the periplasmic sugar bindi
Probab=20.80 E-value=5.4e+02 Score=23.51 Aligned_cols=70 Identities=21% Similarity=0.294 Sum_probs=37.1
Q ss_pred hhhhCCCEEEEEcCCCCchhHHHHHHHHhhCCCeEEeCCCC-ccCCCCcchhhh-ccchhhhhcccC-CCCCCEEEEEeC
Q 017886 277 MVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEK-RIGPGNKIAYKL-MHGELVEKENWL-PKGQITIGITSG 353 (364)
Q Consensus 277 La~~~vD~miVVGGknSSNT~rL~eia~~~~~~t~~Ie~~~-eL~~~~~~~~~~-~~~~~~~~~~wl-~~~~~~VGITAG 353 (364)
+. ..+|.+|+.+.. ++ .+++..++.+.|...+.... +..-.+ +.... ..+.. .-++| ..|.++|++.+|
T Consensus 49 ~~-~~vdgii~~~~~--~~--~~~~~~~~~~~pvV~~~~~~~~~~~~~-v~~D~~~a~~~--~~~~l~~~g~~~i~~i~~ 120 (270)
T cd01544 49 IL-EDVDGIIAIGKF--SQ--EQLAKLAKLNPNLVFVDSNPAPDGFDS-VVPDFEQAVEK--ALDYLLELGHTRIGFIGG 120 (270)
T ss_pred hc-cCcCEEEEecCC--CH--HHHHHHHhhCCCEEEECCCCCCCCCCE-EEECHHHHHHH--HHHHHHHcCCCcEEEECC
Confidence 54 689999998632 22 44444556788998887642 211100 11000 11111 11233 257899999877
Q ss_pred C
Q 017886 354 A 354 (364)
Q Consensus 354 A 354 (364)
.
T Consensus 121 ~ 121 (270)
T cd01544 121 E 121 (270)
T ss_pred C
Confidence 4
No 393
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=20.61 E-value=88 Score=29.33 Aligned_cols=122 Identities=11% Similarity=0.140 Sum_probs=74.2
Q ss_pred chHHHHHHHcCCccccc------ceEEEEe--CCCCCcccHHH---HHHHHHHHHhhCCCCceEEecccccCHHHHHHHH
Q 017886 7 SDIIKKLKENGFEYTWG------NVKVKLA--ESYGFCWGVER---AVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLE 75 (364)
Q Consensus 7 ~~~~~~~~~~~~~~~~~------~mkI~lA--~~~GFC~GV~R---Ai~~a~~~~~~~~~~~vy~lG~iIHN~~Vv~~L~ 75 (364)
.-.+++|+=++....|. .+.|..| .+.|.-+.++| |+++.++-++.++ +
T Consensus 24 al~ls~L~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg----------~---------- 83 (187)
T COG2242 24 ALTLSKLRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFG----------V---------- 83 (187)
T ss_pred HHHHHhhCCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhC----------C----------
Confidence 33566676666666552 2333333 66666666666 5555554444332 2
Q ss_pred HcCcEEecCCccccccccccCCCEEEEcCCCCCHHHHHHHHh---cCCcEEeccCchhHHHHHHHHHHhhCCC-eEEEEe
Q 017886 76 EMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNN---KNVQIVDTTCPWVSKVWTSVEKHKKGDY-TSIIHG 151 (364)
Q Consensus 76 ~~Gv~~v~~~~~~~~~~~l~~g~~VIIrAHGv~~~v~~~l~~---~g~~iiDaTCP~V~kv~~~v~~~~~~Gy-~iIIiG 151 (364)
.++.++...-. +.|.++++-|.+.|--=|--+++++.+.+ .|=.|| +++-......+....+.+.|+ .|+=+.
T Consensus 84 -~n~~vv~g~Ap-~~L~~~~~~daiFIGGg~~i~~ile~~~~~l~~ggrlV-~naitlE~~~~a~~~~~~~g~~ei~~v~ 160 (187)
T COG2242 84 -DNLEVVEGDAP-EALPDLPSPDAIFIGGGGNIEEILEAAWERLKPGGRLV-ANAITLETLAKALEALEQLGGREIVQVQ 160 (187)
T ss_pred -CcEEEEeccch-HhhcCCCCCCEEEECCCCCHHHHHHHHHHHcCcCCeEE-EEeecHHHHHHHHHHHHHcCCceEEEEE
Confidence 23344443111 13445555567777666666777777766 466676 788889999999999999999 555444
No 394
>PRK10936 TMAO reductase system periplasmic protein TorT; Provisional
Probab=20.50 E-value=6.6e+02 Score=24.43 Aligned_cols=87 Identities=13% Similarity=-0.006 Sum_probs=48.5
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHH-HHHHHhhhhCCCEEEEEcCCCCchh
Q 017886 218 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSNT 296 (364)
Q Consensus 218 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ-~a~~eLa~~~vD~miVVGGknSSNT 296 (364)
.+|+++..++ ...-|..+.+-+.+...+. + -++.++++-=+...++| +.+..+....+|.+|+++.. ++.
T Consensus 47 ~~Igvv~p~~-~~~f~~~~~~gi~~aa~~~-G-----~~l~i~~~~~~~~~~~q~~~i~~l~~~~vdgIIl~~~~--~~~ 117 (343)
T PRK10936 47 WKLCALYPHL-KDSYWLSVNYGMVEEAKRL-G-----VDLKVLEAGGYYNLAKQQQQLEQCVAWGADAILLGAVT--PDG 117 (343)
T ss_pred eEEEEEecCC-CchHHHHHHHHHHHHHHHh-C-----CEEEEEcCCCCCCHHHHHHHHHHHHHhCCCEEEEeCCC--hHH
Confidence 5899888653 4456777777776643222 1 12333322101123455 34455545789999998633 232
Q ss_pred --HHHHHHHHhhCCCeEEeCC
Q 017886 297 --SHLQEIAEDRGIPSYWIDS 315 (364)
Q Consensus 297 --~rL~eia~~~~~~t~~Ie~ 315 (364)
..| .+++.+.|...+.+
T Consensus 118 ~~~~l--~~~~~giPvV~~~~ 136 (343)
T PRK10936 118 LNPDL--ELQAANIPVIALVN 136 (343)
T ss_pred hHHHH--HHHHCCCCEEEecC
Confidence 344 45577889886643
No 395
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=20.47 E-value=2.8e+02 Score=26.49 Aligned_cols=17 Identities=29% Similarity=0.321 Sum_probs=14.6
Q ss_pred hCCCEEEEEcCCCCchh
Q 017886 280 EKVDLILVVGGWNSSNT 296 (364)
Q Consensus 280 ~~vD~miVVGGknSSNT 296 (364)
...|++|++||-.+=|.
T Consensus 56 ~~~d~ivv~GGDGTl~~ 72 (293)
T TIGR00147 56 FGVDTVIAGGGDGTINE 72 (293)
T ss_pred cCCCEEEEECCCChHHH
Confidence 46899999999998765
No 396
>TIGR01418 PEP_synth phosphoenolpyruvate synthase. Also called pyruvate,water dikinase and PEP synthase. The member from Methanococcus jannaschii contains a large intein. This enzyme generates phosphoenolpyruvate (PEP) from pyruvate, hydrolyzing ATP to AMP and releasing inorganic phosphate in the process. The enzyme shows extensive homology to other enzymes that use PEP as substrate or product. This enzyme may provide PEP for gluconeogenesis, for PTS-type carbohydrate transport systems, or for other processes.
Probab=20.46 E-value=1.7e+02 Score=32.91 Aligned_cols=48 Identities=25% Similarity=0.244 Sum_probs=42.7
Q ss_pred CcccHHHHHHHHHHHHhhCCCCceEEeccccc-CHHHHHHHHHcCcEEec
Q 017886 35 FCWGVERAVQIAYEARKQFPEEKIWITNEIIH-NPTVNKRLEEMAVQNIP 83 (364)
Q Consensus 35 FC~GV~RAi~~a~~~~~~~~~~~vy~lG~iIH-N~~Vv~~L~~~Gv~~v~ 83 (364)
+-..|.+||+.+.++.++. +.++-+.|++-. +|.....|-.+|+.++.
T Consensus 716 ~hPaV~~~i~~vi~~a~~~-g~~vgicge~~~~~p~~~~~l~~~G~~~ls 764 (782)
T TIGR01418 716 RNPAVLRLIEMAIKAAKEH-GKKVGICGQAPSDYPEVVEFLVEEGIDSIS 764 (782)
T ss_pred CCHHHHHHHHHHHHHHHhc-CCeEEEeCCCCCCCHHHHHHHHHcCCCEEE
Confidence 5578999999999988875 578999999998 89999999999999886
No 397
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=20.39 E-value=2.9e+02 Score=25.46 Aligned_cols=50 Identities=10% Similarity=0.122 Sum_probs=37.5
Q ss_pred CCCCCHHH-HHHHHhcCCcE--EeccCc---hhHHHHHHHHHHhhCCCeEEEEecC
Q 017886 104 AFGAAVEE-MVTLNNKNVQI--VDTTCP---WVSKVWTSVEKHKKGDYTSIIHGKY 153 (364)
Q Consensus 104 AHGv~~~v-~~~l~~~g~~i--iDaTCP---~V~kv~~~v~~~~~~Gy~iIIiG~~ 153 (364)
.|+++.+. ...++..|+.+ +|..|. +++.+.+..+++.++|+..|+.|+-
T Consensus 42 ~h~~~~e~~~~~A~~lgipl~~i~~~~~~e~~~~~l~~~l~~~~~~g~~~vv~G~i 97 (194)
T cd01994 42 YHTVNHELLELQAEAMGIPLIRIEISGEEEDEVEDLKELLRKLKEEGVDAVVFGAI 97 (194)
T ss_pred ccccCHHHHHHHHHHcCCcEEEEeCCCCchHHHHHHHHHHHHHHHcCCCEEEECcc
Confidence 58777664 45667788764 666664 7788888888888889999999954
No 398
>cd06384 PBP1_NPR_B Ligand-binding domain of type B natriuretic peptide receptor. Ligand-binding domain of type B natriuretic peptide receptor (NPR-B). NPR-B is one of three known single membrane-spanning natriuretic peptide receptors that have been identified. Natriuretic peptides are family of structurally related but genetically distinct hormones/paracrine factors that regulate blood volume, blood pressure, ventricular hypertrophy, pulmonary hypertension, fat metabolism, and long bone growth. In mammals there are three natriuretic peptides: ANP, BNP, and CNP. Like NPR-A (or GC-A), NPR-B (or GC-B) is a transmembrane guanylyl cyclase, an enzyme that catalyzes the synthesis of cGMP. NPR-B is the predominant natriuretic peptide receptor in the brain. The rank of order activation of NPR-B by natriuretic peptides is CNPANPBNP. Homozygous inactivating mutations in human NPR-B cause a form of short-limbed dwarfism known as acromesomelic dysplasia type Maroteaux.
Probab=20.39 E-value=1.7e+02 Score=29.22 Aligned_cols=54 Identities=15% Similarity=0.189 Sum_probs=36.2
Q ss_pred ccccccc----ccHHHHHHHHHH-HHhhhhCCCEEEEEcCCCCchhHHHHHHHHhhCCCeEE
Q 017886 256 HFISFNT----ICDATQERQDAM-YKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYW 312 (364)
Q Consensus 256 ~~~v~nT----IC~AT~~RQ~a~-~eLa~~~vD~miVVGGknSSNT~rL~eia~~~~~~t~~ 312 (364)
++.+.|| .|....--..++ ..+. ..++ +|||+..|+-+.-+..+|...+.|..-
T Consensus 44 ~~~~~D~~~~~~~~~~~~~~~~~~~~~~-~~v~--aviGp~~S~~~~av~~i~~~~~iP~Is 102 (399)
T cd06384 44 TLLNKSSELNGGCSESLAPLHAVDLKLY-SDPD--VFFGPGCVYPTASVARFATHWRLPLIT 102 (399)
T ss_pred EEEEeccCCccccchhhhHHHHHHHHhh-cCCC--EEECCCCchHHHHHHHHHhhcCCcEEe
Confidence 4456665 565443322222 2344 4566 488999999999999999999988653
No 399
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=20.28 E-value=2e+02 Score=23.24 Aligned_cols=40 Identities=20% Similarity=0.235 Sum_probs=31.7
Q ss_pred hCCCEEEEEcC-CCCchhHHHHHHHHhhCCCeEEeCCCCcc
Q 017886 280 EKVDLILVVGG-WNSSNTSHLQEIAEDRGIPSYWIDSEKRI 319 (364)
Q Consensus 280 ~~vD~miVVGG-knSSNT~rL~eia~~~~~~t~~Ie~~~eL 319 (364)
.+-|++|++.- .++..+.++++.|++.|.+++.|.+-.+-
T Consensus 59 ~~~~~~i~iS~~g~~~~~~~~~~~a~~~g~~iv~iT~~~~~ 99 (139)
T cd05013 59 TPGDVVIAISFSGETKETVEAAEIAKERGAKVIAITDSANS 99 (139)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHcCCeEEEEcCCCCC
Confidence 35688888875 45677889999999999999999887654
No 400
>COG0683 LivK ABC-type branched-chain amino acid transport systems, periplasmic component [Amino acid transport and metabolism]
Probab=20.13 E-value=1e+02 Score=30.57 Aligned_cols=58 Identities=17% Similarity=0.161 Sum_probs=45.8
Q ss_pred ccccccccccHHHHHHHHHHHHhhhhCCCEEEEEcCCCCchhHHHHHHHHhhCCCeEEeC
Q 017886 255 EHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWID 314 (364)
Q Consensus 255 ~~~~v~nTIC~AT~~RQ~a~~eLa~~~vD~miVVGGknSSNT~rL~eia~~~~~~t~~Ie 314 (364)
-++.+.|+-|....--+.+-+ |. ..-.+.+|||...|+.+.-..+++.+.+.+-+--.
T Consensus 52 velv~~D~~~dp~~a~~~A~~-li-~~~~V~~vvG~~~S~~~~a~~~v~~~~~i~~i~p~ 109 (366)
T COG0683 52 VELVVEDDASDPATAAAVARK-LI-TQDGVDAVVGPTTSGVALAASPVAEEAGVPLISPS 109 (366)
T ss_pred EEEEEecCCCChHHHHHHHHH-HH-hhcCceEEEEeccCcccccchhhHhhcCceEEeec
Confidence 456788999998877766655 55 34568889999999999999999999887765553
No 401
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=20.07 E-value=1.9e+02 Score=28.43 Aligned_cols=100 Identities=9% Similarity=0.091 Sum_probs=62.1
Q ss_pred ceEEEEeCCCCCcccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHHcCcEEecCC-ccccccccc---cCCCE
Q 017886 24 NVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVE-EGKKQFDVV---NKGDV 99 (364)
Q Consensus 24 ~mkI~lA~~~GFC~GV~RAi~~a~~~~~~~~~~~vy~lG~iIHN~~Vv~~L~~~Gv~~v~~~-~~~~~~~~l---~~g~~ 99 (364)
++-.+...|.-||.|+..|+..+.+.. ++.+ .|==+||...+....+.|+-+|.-. -+.+.+.++ .++.+
T Consensus 161 d~ilikdnHi~~~g~v~~av~~~r~~~---~~~~---I~VEv~tleea~eA~~~gaD~I~LD~~~~e~l~~~v~~~~~~i 234 (277)
T PRK05742 161 DAFLIKENHIAACGGIAQAVAAAHRIA---PGKP---VEVEVESLDELRQALAAGADIVMLDELSLDDMREAVRLTAGRA 234 (277)
T ss_pred ccEEecHHHHHHhCCHHHHHHHHHHhC---CCCe---EEEEeCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHhCCCC
Confidence 466778899999999999987776542 2222 4555899988888778887776421 011111110 11334
Q ss_pred EEEcCCCCCHHHHHHHHhcCCcEEeccCch
Q 017886 100 VVLPAFGAAVEEMVTLNNKNVQIVDTTCPW 129 (364)
Q Consensus 100 VIIrAHGv~~~v~~~l~~~g~~iiDaTCP~ 129 (364)
.++=+=|++++-...+.+-|+.+|-..+++
T Consensus 235 ~leAsGGIt~~ni~~~a~tGvD~Isvg~lt 264 (277)
T PRK05742 235 KLEASGGINESTLRVIAETGVDYISIGAMT 264 (277)
T ss_pred cEEEECCCCHHHHHHHHHcCCCEEEEChhh
Confidence 455555777777777777777777665543
Done!