Query 017886
Match_columns 364
No_of_seqs 126 out of 1075
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 06:30:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017886.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017886hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dnf_A ISPH, LYTB, 4-hydroxy-3 100.0 6E-101 2E-105 741.8 28.1 270 24-364 1-274 (297)
2 3szu_A ISPH, 4-hydroxy-3-methy 100.0 2E-100 7E-105 746.2 28.1 277 22-364 10-290 (328)
3 3szu_A ISPH, 4-hydroxy-3-methy 94.4 0.53 1.8E-05 46.0 13.3 172 36-242 108-296 (328)
4 3dnf_A ISPH, LYTB, 4-hydroxy-3 94.4 0.96 3.3E-05 43.6 14.8 169 36-242 96-280 (297)
5 2xdq_A Light-independent proto 82.6 20 0.00068 35.4 13.9 104 24-130 128-275 (460)
6 3jx9_A Putative phosphoheptose 79.4 5.3 0.00018 35.2 7.5 68 39-115 24-97 (170)
7 3d8t_A Uroporphyrinogen-III sy 79.0 32 0.0011 31.5 13.1 117 6-127 44-187 (286)
8 3h75_A Periplasmic sugar-bindi 75.6 15 0.00053 33.8 10.0 91 218-318 4-97 (350)
9 3k4h_A Putative transcriptiona 74.9 43 0.0015 29.4 12.7 127 218-357 9-143 (292)
10 3aek_A Light-independent proto 74.7 22 0.00076 35.1 11.4 104 24-130 148-261 (437)
11 1s3l_A Hypothetical protein MJ 74.4 12 0.00041 32.5 8.4 63 17-84 17-83 (190)
12 1wcw_A Uroporphyrinogen III sy 73.9 44 0.0015 29.8 12.3 117 6-127 19-162 (261)
13 4eyg_A Twin-arginine transloca 73.5 15 0.00051 33.6 9.2 93 219-315 8-104 (368)
14 3o3m_B Beta subunit 2-hydroxya 72.7 3.8 0.00013 40.1 5.1 53 32-84 198-258 (385)
15 2k1g_A Lipoprotein SPR; soluti 72.6 3.1 0.00011 35.3 3.9 76 1-104 1-78 (135)
16 8abp_A L-arabinose-binding pro 71.9 22 0.00074 31.7 9.7 86 219-315 4-90 (306)
17 3ksm_A ABC-type sugar transpor 71.2 26 0.0009 30.4 9.9 128 219-355 2-137 (276)
18 3huu_A Transcription regulator 69.7 54 0.0019 29.3 11.9 127 218-357 23-156 (305)
19 3k9c_A Transcriptional regulat 69.6 19 0.00064 32.2 8.7 124 218-357 13-138 (289)
20 3jy6_A Transcriptional regulat 67.0 65 0.0022 28.2 12.8 124 218-356 8-134 (276)
21 2h3h_A Sugar ABC transporter, 66.4 32 0.0011 31.0 9.7 125 219-355 3-133 (313)
22 3qk7_A Transcriptional regulat 66.1 33 0.0011 30.7 9.6 126 218-357 7-138 (294)
23 3dbi_A Sugar-binding transcrip 65.2 59 0.002 29.6 11.4 127 218-356 62-192 (338)
24 3ipc_A ABC transporter, substr 63.4 30 0.001 31.5 8.9 58 255-315 44-101 (356)
25 3g1w_A Sugar ABC transporter; 63.3 50 0.0017 29.3 10.3 128 218-356 5-138 (305)
26 3o74_A Fructose transport syst 63.2 74 0.0025 27.5 11.5 126 218-356 3-131 (272)
27 3l6u_A ABC-type sugar transpor 63.0 76 0.0026 27.8 11.4 91 218-318 9-100 (293)
28 3uug_A Multiple sugar-binding 62.6 40 0.0014 30.3 9.6 90 218-317 4-94 (330)
29 3hut_A Putative branched-chain 62.1 25 0.00086 32.0 8.2 95 218-315 5-104 (358)
30 3gv0_A Transcriptional regulat 62.0 84 0.0029 27.7 11.8 127 218-357 9-139 (288)
31 3td9_A Branched chain amino ac 61.2 34 0.0012 31.3 8.9 134 218-355 17-159 (366)
32 2ioy_A Periplasmic sugar-bindi 61.2 66 0.0023 28.3 10.6 88 219-316 3-91 (283)
33 3m9w_A D-xylose-binding peripl 59.5 39 0.0014 30.2 8.9 128 218-357 3-135 (313)
34 3brq_A HTH-type transcriptiona 59.4 69 0.0024 28.0 10.4 126 218-356 20-150 (296)
35 3tb6_A Arabinose metabolism tr 58.6 68 0.0023 28.0 10.2 128 218-356 16-148 (298)
36 2dri_A D-ribose-binding protei 58.2 69 0.0024 28.0 10.1 90 218-317 2-92 (271)
37 3e3m_A Transcriptional regulat 57.8 81 0.0028 29.0 11.0 124 218-355 71-197 (355)
38 3trj_A Phosphoheptose isomeras 57.8 52 0.0018 28.7 9.1 23 94-116 112-135 (201)
39 3rot_A ABC sugar transporter, 57.5 89 0.003 27.7 10.9 132 218-359 4-144 (297)
40 3egc_A Putative ribose operon 57.0 57 0.002 28.7 9.5 125 218-356 9-136 (291)
41 3eag_A UDP-N-acetylmuramate:L- 56.7 24 0.00084 33.1 7.2 63 57-124 30-95 (326)
42 3l49_A ABC sugar (ribose) tran 56.4 1E+02 0.0035 26.9 11.0 126 218-355 6-135 (291)
43 1usg_A Leucine-specific bindin 56.0 63 0.0022 29.0 9.7 94 219-315 4-101 (346)
44 3p9z_A Uroporphyrinogen III co 55.9 21 0.00071 31.8 6.3 64 55-123 67-137 (229)
45 2fn9_A Ribose ABC transporter, 55.8 1.1E+02 0.0036 26.9 11.0 89 218-316 3-92 (290)
46 3d02_A Putative LACI-type tran 55.2 46 0.0016 29.4 8.5 89 218-316 5-95 (303)
47 2iks_A DNA-binding transcripti 55.0 68 0.0023 28.3 9.6 126 218-356 21-149 (293)
48 2yva_A DNAA initiator-associat 54.5 49 0.0017 28.0 8.2 22 94-115 107-129 (196)
49 3lop_A Substrate binding perip 54.3 38 0.0013 31.0 8.0 96 219-316 7-108 (364)
50 3i45_A Twin-arginine transloca 54.2 16 0.00055 34.0 5.5 57 255-314 47-104 (387)
51 4es6_A Uroporphyrinogen-III sy 53.5 22 0.00074 31.9 6.0 116 6-126 18-163 (254)
52 2kkn_A Uncharacterized protein 53.5 47 0.0016 28.4 8.0 83 56-159 52-143 (178)
53 3n0x_A Possible substrate bind 52.7 13 0.00044 34.7 4.5 55 255-312 47-102 (374)
54 4f06_A Extracellular ligand-bi 52.2 5.6 0.00019 37.3 1.9 66 255-321 45-111 (371)
55 2qh8_A Uncharacterized protein 52.1 61 0.0021 29.1 8.9 88 218-314 9-97 (302)
56 1jr2_A Uroporphyrinogen-III sy 51.7 67 0.0023 29.3 9.2 115 7-126 38-187 (286)
57 3re1_A Uroporphyrinogen-III sy 51.2 43 0.0015 30.4 7.7 116 6-126 26-171 (269)
58 4gnr_A ABC transporter substra 51.1 10 0.00036 34.7 3.5 65 255-321 49-114 (353)
59 3obb_A Probable 3-hydroxyisobu 50.9 90 0.0031 29.1 10.1 94 44-148 17-119 (300)
60 3mw8_A Uroporphyrinogen-III sy 50.7 37 0.0013 30.0 7.1 114 5-123 12-147 (240)
61 3o21_A Glutamate receptor 3; p 49.6 11 0.00038 35.8 3.5 53 256-311 44-97 (389)
62 1gud_A ALBP, D-allose-binding 49.5 76 0.0026 28.1 9.0 90 219-316 3-93 (288)
63 3h5o_A Transcriptional regulat 49.1 82 0.0028 28.7 9.4 124 218-356 63-189 (339)
64 2h1v_A Ferrochelatase; rossman 48.2 41 0.0014 31.8 7.3 91 36-143 119-210 (310)
65 3snr_A Extracellular ligand-bi 47.9 21 0.0007 32.4 5.0 58 256-316 44-102 (362)
66 3h5l_A Putative branched-chain 47.9 14 0.00047 35.0 3.9 59 255-315 56-115 (419)
67 2a22_A Vacuolar protein sortin 47.8 46 0.0016 29.1 7.1 65 16-84 17-86 (215)
68 3hsy_A Glutamate receptor 2; l 47.7 12 0.00042 35.0 3.5 57 256-314 35-91 (376)
69 2rgy_A Transcriptional regulat 47.7 1.1E+02 0.0039 26.9 9.9 125 218-356 9-139 (290)
70 3gbv_A Putative LACI-family tr 47.6 1.1E+02 0.0038 26.7 9.7 94 218-317 9-104 (304)
71 2rjo_A Twin-arginine transloca 47.5 92 0.0031 28.2 9.4 89 218-316 6-97 (332)
72 3sg0_A Extracellular ligand-bi 47.4 23 0.00077 32.5 5.2 58 256-316 64-122 (386)
73 2hsg_A Glucose-resistance amyl 47.3 1.1E+02 0.0038 27.6 9.9 124 218-355 61-187 (332)
74 3n0w_A ABC branched chain amin 46.5 22 0.00075 33.0 5.0 57 255-314 47-104 (379)
75 3j21_Z 50S ribosomal protein L 46.5 57 0.0019 25.5 6.8 41 280-321 30-72 (99)
76 4evq_A Putative ABC transporte 46.4 50 0.0017 30.2 7.4 95 218-315 17-114 (375)
77 1x92_A APC5045, phosphoheptose 46.2 1E+02 0.0035 26.1 9.0 35 94-128 111-149 (199)
78 1tjy_A Sugar transport protein 45.8 1.4E+02 0.0048 26.9 10.3 128 218-356 4-139 (316)
79 3brs_A Periplasmic binding pro 45.6 75 0.0026 27.8 8.3 92 218-316 6-99 (289)
80 1eiw_A Hypothetical protein MT 45.6 21 0.00073 29.2 4.2 45 275-321 34-83 (111)
81 3hcn_A Ferrochelatase, mitocho 45.5 1.7E+02 0.0056 28.5 11.3 91 36-143 132-226 (359)
82 2fqx_A Membrane lipoprotein TM 45.2 84 0.0029 28.8 8.8 130 218-358 5-142 (318)
83 3hcw_A Maltose operon transcri 44.5 1.5E+02 0.005 26.2 10.2 126 218-356 8-142 (295)
84 4gbj_A 6-phosphogluconate dehy 44.1 59 0.002 30.2 7.6 94 45-149 20-120 (297)
85 3i09_A Periplasmic branched-ch 44.0 19 0.00064 33.3 4.1 58 255-314 45-102 (375)
86 2fvy_A D-galactose-binding per 43.4 1.7E+02 0.0058 25.6 10.3 89 218-316 3-93 (309)
87 3qek_A NMDA glutamate receptor 43.3 77 0.0026 29.3 8.3 56 256-313 40-100 (384)
88 3d8u_A PURR transcriptional re 43.2 1.6E+02 0.0055 25.3 12.9 125 218-356 4-131 (275)
89 3cl6_A PUUE allantoinase; URIC 43.0 30 0.001 32.2 5.4 84 35-119 75-180 (308)
90 3hno_A Pyrophosphate-dependent 42.2 15 0.0005 36.8 3.2 52 268-321 91-145 (419)
91 1t1j_A Hypothetical protein; s 42.1 16 0.00056 30.6 3.0 39 275-314 77-118 (125)
92 3ff4_A Uncharacterized protein 42.0 36 0.0012 27.9 5.1 31 100-131 86-116 (122)
93 2vk2_A YTFQ, ABC transporter p 41.6 1.9E+02 0.0064 25.6 10.7 89 218-316 3-92 (306)
94 4f11_A Gamma-aminobutyric acid 41.3 13 0.00045 35.3 2.6 58 255-313 58-115 (433)
95 3s99_A Basic membrane lipoprot 40.9 78 0.0027 30.3 8.1 132 218-358 27-162 (356)
96 3dfz_A SIRC, precorrin-2 dehyd 40.8 94 0.0032 28.1 8.2 103 6-123 13-119 (223)
97 2vhw_A Alanine dehydrogenase; 40.8 1.4E+02 0.0048 28.6 9.9 44 90-133 81-133 (377)
98 3hn7_A UDP-N-acetylmuramate-L- 40.1 52 0.0018 33.2 7.0 92 20-123 15-108 (524)
99 3e61_A Putative transcriptiona 40.1 1.6E+02 0.0055 25.4 9.5 121 218-356 9-133 (277)
100 3bbl_A Regulatory protein of L 39.7 81 0.0028 27.8 7.6 126 218-356 5-136 (287)
101 2xvy_A Chelatase, putative; me 39.3 1.2E+02 0.0039 27.4 8.6 93 8-109 52-158 (269)
102 1dp4_A Atrial natriuretic pept 39.2 25 0.00084 33.2 4.2 63 256-320 47-115 (435)
103 3o1i_D Periplasmic protein TOR 38.9 1E+02 0.0035 27.0 8.1 91 218-317 6-97 (304)
104 2aif_A Ribosomal protein L7A; 38.8 32 0.0011 28.8 4.4 37 284-320 59-97 (135)
105 3lft_A Uncharacterized protein 38.7 1.3E+02 0.0044 26.7 8.8 87 218-315 3-91 (295)
106 1mio_A Nitrogenase molybdenum 38.6 1.2E+02 0.004 31.0 9.4 106 24-130 165-287 (533)
107 3jvd_A Transcriptional regulat 38.5 1.7E+02 0.0057 26.6 9.7 119 218-357 65-186 (333)
108 2hqb_A Transcriptional activat 38.1 81 0.0028 28.6 7.4 130 218-358 6-139 (296)
109 2x7x_A Sensor protein; transfe 38.0 1.8E+02 0.006 26.2 9.7 126 218-355 7-138 (325)
110 3lkb_A Probable branched-chain 38.0 30 0.001 32.1 4.5 60 255-318 49-109 (392)
111 1rlg_A 50S ribosomal protein L 37.8 56 0.0019 26.5 5.6 59 280-356 42-103 (119)
112 1jeo_A MJ1247, hypothetical pr 37.7 1.7E+02 0.0059 24.1 9.0 22 94-115 80-102 (180)
113 1vq8_F 50S ribosomal protein L 37.4 55 0.0019 26.5 5.5 59 280-356 44-105 (120)
114 4hwg_A UDP-N-acetylglucosamine 36.0 63 0.0022 31.1 6.6 53 261-316 73-126 (385)
115 3eaf_A ABC transporter, substr 35.0 37 0.0013 31.6 4.6 94 256-354 51-150 (391)
116 3kke_A LACI family transcripti 34.5 2.4E+02 0.0083 24.9 11.1 124 218-356 16-142 (303)
117 3c3k_A Alanine racemase; struc 34.3 2.3E+02 0.008 24.7 11.8 124 218-356 9-135 (285)
118 3om0_A Glutamate receptor, ion 34.2 25 0.00084 32.9 3.2 56 256-313 45-101 (393)
119 1w41_A 50S ribosomal protein L 34.1 56 0.0019 25.6 4.9 40 280-320 31-72 (101)
120 3saj_A Glutamate receptor 1; r 34.0 20 0.0007 33.5 2.6 55 256-313 42-97 (384)
121 2jyx_A Lipoprotein SPR; soluti 33.7 42 0.0014 27.8 4.3 76 1-104 1-78 (136)
122 1dbq_A Purine repressor; trans 33.4 2.4E+02 0.0081 24.4 10.5 87 218-316 8-96 (289)
123 2ale_A SNU13, NHP2/L7AE family 32.9 44 0.0015 28.0 4.3 66 280-363 47-116 (134)
124 1xbi_A 50S ribosomal protein L 32.8 76 0.0026 25.8 5.6 58 280-356 44-105 (120)
125 2j13_A Polysaccharide deacetyl 32.8 2.4E+02 0.0081 25.3 9.6 44 40-83 129-175 (247)
126 3v7e_A Ribosome-associated pro 32.6 36 0.0012 25.9 3.4 40 280-320 26-66 (82)
127 3mmz_A Putative HAD family hyd 32.0 1.1E+02 0.0037 25.5 6.7 67 70-155 47-113 (176)
128 3jyw_G 60S ribosomal protein L 31.9 42 0.0014 27.5 3.9 40 280-320 40-81 (113)
129 1lbq_A Ferrochelatase; rossman 31.7 80 0.0027 30.7 6.5 69 58-143 162-231 (362)
130 1k1e_A Deoxy-D-mannose-octulos 31.5 1.4E+02 0.0048 24.7 7.3 74 67-160 40-114 (180)
131 3kjx_A Transcriptional regulat 31.5 2.1E+02 0.0072 25.9 9.2 124 218-355 69-195 (344)
132 1ma3_A SIR2-AF2, transcription 31.3 45 0.0015 30.6 4.4 56 255-315 160-218 (253)
133 2f48_A Diphosphate--fructose-6 30.7 31 0.0011 35.7 3.6 54 267-320 152-206 (555)
134 2fep_A Catabolite control prot 30.5 2.8E+02 0.0094 24.3 11.0 124 218-355 17-143 (289)
135 2xbl_A Phosphoheptose isomeras 30.5 81 0.0028 26.5 5.7 39 280-318 115-154 (198)
136 2xzm_U Ribosomal protein L7AE 30.3 89 0.003 25.8 5.7 42 279-320 38-80 (126)
137 1jdp_A NPR-C, atrial natriuret 30.2 33 0.0011 32.6 3.4 56 256-312 57-113 (441)
138 1m2k_A Silent information regu 30.2 51 0.0017 30.1 4.6 34 280-315 176-212 (249)
139 4dll_A 2-hydroxy-3-oxopropiona 30.2 2.6E+02 0.0091 25.7 9.7 106 24-147 31-145 (320)
140 2y8u_A Chitin deacetylase; hyd 30.0 2.9E+02 0.0099 24.4 10.0 27 57-83 125-151 (230)
141 1vb5_A Translation initiation 30.0 61 0.0021 30.2 5.1 57 95-154 108-170 (276)
142 1tk9_A Phosphoheptose isomeras 29.9 2.3E+02 0.008 23.3 8.7 34 94-127 108-145 (188)
143 1yc5_A NAD-dependent deacetyla 29.7 52 0.0018 30.0 4.6 56 255-315 157-215 (246)
144 3hs3_A Ribose operon repressor 29.7 2.3E+02 0.008 24.6 8.8 119 218-356 11-133 (277)
145 3v7q_A Probable ribosomal prot 29.7 57 0.0019 25.7 4.2 41 280-320 34-74 (101)
146 1ny1_A Probable polysaccharide 29.6 2.5E+02 0.0086 24.9 9.1 27 57-83 137-163 (240)
147 4a3s_A 6-phosphofructokinase; 29.0 67 0.0023 30.7 5.4 47 269-320 81-127 (319)
148 1kyq_A Met8P, siroheme biosynt 28.9 62 0.0021 30.3 5.0 63 281-358 106-172 (274)
149 3on1_A BH2414 protein; structu 28.8 59 0.002 25.5 4.2 41 280-320 33-73 (101)
150 2o20_A Catabolite control prot 28.7 3.2E+02 0.011 24.5 12.4 124 218-355 64-190 (332)
151 3cpq_A 50S ribosomal protein L 28.4 55 0.0019 26.1 4.0 40 280-320 36-77 (110)
152 3kg2_A Glutamate receptor 2; I 28.3 36 0.0012 35.3 3.6 54 256-311 35-88 (823)
153 1jx6_A LUXP protein; protein-l 28.0 3.3E+02 0.011 24.4 10.1 90 218-315 44-137 (342)
154 3tqv_A Nicotinate-nucleotide p 27.9 1.5E+02 0.005 28.1 7.4 95 24-125 170-269 (287)
155 3clk_A Transcription regulator 27.9 1.2E+02 0.0042 26.6 6.7 123 218-355 9-135 (290)
156 3mq4_A Mglur7, metabotropic gl 27.9 40 0.0014 33.0 3.7 32 282-313 116-147 (481)
157 3qfa_C Thioredoxin; protein-pr 27.8 1.1E+02 0.0038 23.2 5.7 45 225-279 14-58 (116)
158 1wn2_A Peptidyl-tRNA hydrolase 27.3 42 0.0014 27.7 3.2 39 283-321 55-95 (121)
159 3bil_A Probable LACI-family tr 27.3 2.5E+02 0.0085 25.6 8.9 124 218-355 67-194 (348)
160 2yva_A DNAA initiator-associat 27.2 99 0.0034 26.0 5.7 38 280-317 108-146 (196)
161 3pdu_A 3-hydroxyisobutyrate de 27.0 1.5E+02 0.0052 26.6 7.3 83 56-148 25-117 (287)
162 1mio_B Nitrogenase molybdenum 26.9 3.3E+02 0.011 26.7 10.2 105 24-130 131-269 (458)
163 3k35_A NAD-dependent deacetyla 26.9 82 0.0028 30.3 5.5 58 255-315 183-241 (318)
164 2k6g_A Replication factor C su 26.6 1.8E+02 0.0062 23.3 6.8 60 55-124 35-97 (109)
165 3ij5_A 3-deoxy-D-manno-octulos 26.6 1.9E+02 0.0065 25.2 7.6 68 70-156 84-152 (211)
166 1s5p_A NAD-dependent deacetyla 26.6 56 0.0019 29.6 4.1 56 255-315 146-202 (235)
167 2lbw_A H/ACA ribonucleoprotein 26.5 75 0.0026 25.9 4.5 41 280-320 35-76 (121)
168 1tk9_A Phosphoheptose isomeras 26.2 1E+02 0.0034 25.7 5.5 38 280-317 109-147 (188)
169 1pea_A Amidase operon; gene re 26.1 69 0.0024 29.6 4.8 96 218-316 8-108 (385)
170 1x92_A APC5045, phosphoheptose 26.0 1E+02 0.0034 26.1 5.5 38 280-317 112-150 (199)
171 3u7q_B Nitrogenase molybdenum- 25.4 2.6E+02 0.0091 28.3 9.4 105 26-130 180-321 (523)
172 2bon_A Lipid kinase; DAG kinas 25.2 1.2E+02 0.0042 28.3 6.4 17 280-296 81-97 (332)
173 2e4u_A Metabotropic glutamate 25.2 68 0.0023 31.9 4.8 31 282-312 116-146 (555)
174 3trj_A Phosphoheptose isomeras 25.0 93 0.0032 27.0 5.2 38 280-317 113-151 (201)
175 2cc0_A Acetyl-xylan esterase; 24.9 3.2E+02 0.011 23.2 11.8 95 39-153 77-185 (195)
176 2xhz_A KDSD, YRBH, arabinose 5 24.9 85 0.0029 26.1 4.8 38 280-317 95-133 (183)
177 3lk7_A UDP-N-acetylmuramoylala 24.9 74 0.0025 31.2 5.0 123 22-156 7-150 (451)
178 1c9k_A COBU, adenosylcobinamid 24.5 58 0.002 28.6 3.7 36 285-321 2-37 (180)
179 2i2w_A Phosphoheptose isomeras 24.4 95 0.0033 26.9 5.1 38 280-317 130-168 (212)
180 3g85_A Transcriptional regulat 24.3 65 0.0022 28.3 4.1 124 218-356 12-138 (289)
181 2i5i_A UPF0249 protein EF_3048 24.2 37 0.0013 31.4 2.5 25 24-48 4-29 (263)
182 3fwz_A Inner membrane protein 24.2 1.2E+02 0.0042 24.1 5.5 72 97-176 8-82 (140)
183 3f4w_A Putative hexulose 6 pho 23.9 3.3E+02 0.011 23.0 9.9 40 109-150 93-133 (211)
184 3u31_A SIR2A, transcriptional 23.9 1.2E+02 0.0041 28.6 6.0 58 255-315 193-251 (290)
185 2fc3_A 50S ribosomal protein L 23.5 75 0.0026 25.9 4.0 57 280-354 43-102 (124)
186 4hv4_A UDP-N-acetylmuramate--L 23.4 1.2E+02 0.0041 30.2 6.2 60 57-123 48-109 (494)
187 1pfk_A Phosphofructokinase; tr 23.3 64 0.0022 31.0 4.0 42 268-313 81-123 (320)
188 3iz5_f 60S ribosomal protein L 23.0 1.1E+02 0.0036 24.8 4.8 43 277-320 38-82 (112)
189 3qbu_A Putative uncharacterize 22.9 58 0.002 30.6 3.6 90 38-128 71-183 (326)
190 2qv7_A Diacylglycerol kinase D 22.9 1.3E+02 0.0044 28.1 6.1 19 275-293 74-92 (337)
191 1m3s_A Hypothetical protein YC 22.6 87 0.003 26.2 4.4 38 280-317 78-116 (186)
192 4g85_A Histidine-tRNA ligase, 22.4 3.7E+02 0.013 26.7 9.7 41 110-153 437-480 (517)
193 1jeo_A MJ1247, hypothetical pr 22.3 99 0.0034 25.6 4.7 38 280-317 81-119 (180)
194 3sho_A Transcriptional regulat 22.3 97 0.0033 25.8 4.6 39 280-318 86-125 (187)
195 1pg5_A Aspartate carbamoyltran 22.1 1E+02 0.0035 29.2 5.2 58 97-155 95-160 (299)
196 2h78_A Hibadh, 3-hydroxyisobut 22.0 4.3E+02 0.015 23.6 10.0 81 57-147 28-118 (302)
197 1zxx_A 6-phosphofructokinase; 22.0 70 0.0024 30.7 4.0 42 268-313 80-122 (319)
198 2qu7_A Putative transcriptiona 21.8 3.8E+02 0.013 23.2 8.7 122 218-356 9-133 (288)
199 1vim_A Hypothetical protein AF 21.8 3.7E+02 0.013 22.8 9.2 34 94-127 87-124 (200)
200 2h4a_A YRAM (HI1655); perplasm 21.8 32 0.0011 32.3 1.6 94 254-352 32-129 (325)
201 1jye_A Lactose operon represso 21.8 4.5E+02 0.015 23.8 10.0 126 218-356 62-190 (349)
202 1vim_A Hypothetical protein AF 21.8 89 0.003 26.9 4.4 38 280-317 88-126 (200)
203 3mvn_A UDP-N-acetylmuramate:L- 21.5 75 0.0026 26.7 3.7 78 229-319 46-128 (163)
204 3gnh_A L-lysine, L-arginine ca 21.5 3.3E+02 0.011 24.9 8.5 94 34-129 161-270 (403)
205 3sm9_A Mglur3, metabotropic gl 21.3 93 0.0032 30.5 4.9 30 283-312 116-145 (479)
206 1y81_A Conserved hypothetical 20.8 86 0.0029 25.8 3.9 27 106-132 103-129 (138)
207 3pef_A 6-phosphogluconate dehy 20.8 2.5E+02 0.0085 25.2 7.4 91 45-147 16-116 (287)
208 1pjq_A CYSG, siroheme synthase 20.7 52 0.0018 32.7 2.9 55 283-357 72-133 (457)
209 3ckm_A YRAM (HI1655), LPOA; pe 20.7 42 0.0014 30.7 2.1 62 253-319 33-95 (327)
210 1uf3_A Hypothetical protein TT 20.7 1.4E+02 0.0047 25.0 5.3 57 23-82 4-67 (228)
211 3ks9_A Mglur1, metabotropic gl 20.5 99 0.0034 30.4 4.9 32 282-313 127-158 (496)
212 3roj_A D-fructose 1,6-bisphosp 20.3 31 0.0011 34.0 1.1 43 66-111 293-335 (379)
213 3miz_A Putative transcriptiona 20.2 88 0.003 27.7 4.1 126 218-358 14-144 (301)
214 1z0s_A Probable inorganic poly 20.2 1.4E+02 0.0048 27.9 5.7 66 219-314 31-98 (278)
215 1vpq_A Hypothetical protein TM 20.1 74 0.0025 29.7 3.7 48 61-109 157-209 (273)
216 3h6g_A Glutamate receptor, ion 20.1 43 0.0015 31.2 2.0 47 273-321 63-110 (395)
217 4ekn_B Aspartate carbamoyltran 20.0 2E+02 0.007 27.2 6.8 59 97-156 97-163 (306)
No 1
>3dnf_A ISPH, LYTB, 4-hydroxy-3-methylbut-2-ENYL diphosphate reductas; trilobal strucure, open alpha/beta, iron, iron-sulfur, isopr biosynthesis; 1.65A {Aquifex aeolicus}
Probab=100.00 E-value=6e-101 Score=741.80 Aligned_cols=270 Identities=31% Similarity=0.543 Sum_probs=254.1
Q ss_pred ceEEEEeCCCCCcccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHHcCcEEecCCccccccccccCCCEEEEc
Q 017886 24 NVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLP 103 (364)
Q Consensus 24 ~mkI~lA~~~GFC~GV~RAi~~a~~~~~~~~~~~vy~lG~iIHN~~Vv~~L~~~Gv~~v~~~~~~~~~~~l~~g~~VIIr 103 (364)
.|+|+||+++||||||+|||++|+++++++ +++||++|||||||+|+++|+++|+.++++ +++|+|++||||
T Consensus 1 ~m~I~lA~~~GFC~GV~RAI~~a~~al~~~-~~~iy~~g~IVHN~~Vv~~L~~~Gv~~v~~-------~ev~~g~~VIir 72 (297)
T 3dnf_A 1 MVDIIIAEHAGFCFGVKRAVKLAEESLKES-QGKVYTLGPIIHNPQEVNRLKNLGVFPSQG-------EEFKEGDTVIIR 72 (297)
T ss_dssp CCEEEECTTCSSCHHHHHHHHHHHHHTTTC-CSCEEESSCSSSCHHHHHHHHHHTEEECCS-------SCCCTTCEEEEC
T ss_pred CeEEEEeCCCCCCccHHHHHHHHHHHHHhc-CCCEEEeCCcccCHHHHHHHHhCCCEEech-------hhCCCCCEEEEE
Confidence 399999999999999999999999999876 478999999999999999999999999973 678889999999
Q ss_pred CCCCCHHHHHHHHhcCCcEEeccCchhHHHHHHHHHHhhCCCeEEEEecCCCceeeeecccC---C-cEEEEcChhhHHH
Q 017886 104 AFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFA---G-KYIIVKNMKEAEY 179 (364)
Q Consensus 104 AHGv~~~v~~~l~~~g~~iiDaTCP~V~kv~~~v~~~~~~Gy~iIIiG~~~HpEv~gi~g~~---~-~~~vv~~~~e~~~ 179 (364)
|||+||+++++|++||++|||||||||+|+|++|++++++||+|||+|+++||||+|++||+ + .++||++++|++.
T Consensus 73 AHGv~~~v~~~a~~rgl~iiDATCP~V~Kvh~~v~~~~~~Gy~iiiiG~~~HpEV~G~~g~~~~~~~~~~vV~~~ed~~~ 152 (297)
T 3dnf_A 73 SHGIPPEKEEALRKKGLKVIDATCPYVKAVHEAVCQLTREGYFVVLVGEKNHPEVIGTLGYLRACNGKGIVVETLEDIGE 152 (297)
T ss_dssp TTCCCHHHHHHHHHTTCEEEECCCHHHHHHHHHHHHHHHTTCEEEEESCTTCHHHHHHHHHHHHTTCCEEEESSGGGGGG
T ss_pred CCCCCHHHHHHHHHCCCEEEeCCCcchHHHHHHHHHHHhCCCEEEEEecCCCceEEeeccccccCCCcEEEEcCHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999 4 6899999999876
Q ss_pred hhhhhcCCCCCCCCChHHHHHHHHHhhhcCCCCCCCCCceEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccc
Q 017886 180 VCDYILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFIS 259 (364)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~v 259 (364)
+. .++|+++++||||+.++|.+|++.|+++ | +++.+
T Consensus 153 l~----------------------------------~~~kv~~vsQTT~s~~~~~~iv~~L~~r----~------p~~~~ 188 (297)
T 3dnf_A 153 AL----------------------------------KHERVGIVAQTTQNEEFFKEVVGEIALW----V------KEVKV 188 (297)
T ss_dssp GG----------------------------------GCSEEEEEECTTCCHHHHHHHHHHHHHH----S------SEEEE
T ss_pred cC----------------------------------CCCcEEEEEecCCcHHHHHHHHHHHHHh----C------CCCCC
Confidence 51 1259999999999999999999999874 2 34778
Q ss_pred cccccHHHHHHHHHHHHhhhhCCCEEEEEcCCCCchhHHHHHHHHhhCCCeEEeCCCCccCCCCcchhhhccchhhhhcc
Q 017886 260 FNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKEN 339 (364)
Q Consensus 260 ~nTIC~AT~~RQ~a~~eLa~~~vD~miVVGGknSSNT~rL~eia~~~~~~t~~Ie~~~eL~~~~~~~~~~~~~~~~~~~~ 339 (364)
+||||+||++||+|+++|| +++|+||||||+|||||+||+|||++.|+|+||||+++||++ +
T Consensus 189 ~~tIC~AT~~RQ~av~~la-~~~D~miVVGg~nSSNT~rL~eia~~~~~~ty~Ie~~~el~~-----------------~ 250 (297)
T 3dnf_A 189 INTICNATSLRQESVKKLA-PEVDVMIIIGGKNSGNTRRLYYISKELNPNTYHIETAEELQP-----------------E 250 (297)
T ss_dssp ECCCCSHHHHHHHHHHHHG-GGSSEEEEESCTTCHHHHHHHHHHHHHCSSEEEESSGGGCCG-----------------G
T ss_pred CCCccHHHHHHHHHHHHHH-hhCCEEEEECCCCCchhHHHHHHHHhcCCCEEEeCChHHCCH-----------------H
Confidence 9999999999999999999 689999999999999999999999999999999999999999 9
Q ss_pred cCCCCCCEEEEEeCCCCCHHHHhcC
Q 017886 340 WLPKGQITIGITSGASTPDKVISSA 364 (364)
Q Consensus 340 wl~~~~~~VGITAGASTP~~lI~e~ 364 (364)
|| .++.+||||||||||+|||++|
T Consensus 251 wl-~~~~~VGITAGASTP~~li~eV 274 (297)
T 3dnf_A 251 WF-RGVKRVGISAGASTPDWIIEQV 274 (297)
T ss_dssp GG-TTCSEEEEEECTTCCHHHHHHH
T ss_pred Hh-CCCCEEEEeecCCCCHHHHHHH
Confidence 99 6999999999999999999985
No 2
>3szu_A ISPH, 4-hydroxy-3-methylbut-2-ENYL diphosphate reductas; 3Fe-4S iron-sulfur cluster, conserved cysteine, IPP and DMAP production final STEP; HET: H6P; 1.40A {Escherichia coli} PDB: 3szl_A* 3f7t_A* 3szo_A* 3t0f_A* 3t0g_A* 3urk_A* 3utc_A* 3utd_A* 3uv3_A* 3uv6_A* 3uv7_A* 3uwm_A* 3ke8_A* 3ke9_A* 3kef_A* 3kel_A 3kem_A*
Probab=100.00 E-value=2e-100 Score=746.23 Aligned_cols=277 Identities=28% Similarity=0.449 Sum_probs=255.5
Q ss_pred ccceEEEEeCCCCCcccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHHcCcEEecCCccccccccccCCCEEE
Q 017886 22 WGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVV 101 (364)
Q Consensus 22 ~~~mkI~lA~~~GFC~GV~RAi~~a~~~~~~~~~~~vy~lG~iIHN~~Vv~~L~~~Gv~~v~~~~~~~~~~~l~~g~~VI 101 (364)
-|.|.|++|+++||||||+|||++|++++++++ ++||++|||||||+|+++|+++|+.+++ +++++|+|++||
T Consensus 10 ~~~~~i~lA~~~GFC~GV~RAI~~ae~al~~~~-~~iy~~g~IVHN~~Vv~~L~~~Gv~~ve------~l~ev~~g~~VI 82 (328)
T 3szu_A 10 HGSMQILLANPRGFCAGVDRAISIVENALAIYG-APIYVRHEVVHNRYVVDSLRERGAIFIE------QISEVPDGAILI 82 (328)
T ss_dssp ---CEEEECSSCSCCHHHHHHHHHHHHHHHHHC-SCEEEESCSSSCHHHHHHHHHTTEEEES------SGGGSCTTCEEE
T ss_pred CCceEEEEeCCCCcCccHHHHHHHHHHHHHhcC-CCEEEeCCCccCHHHHHHHHHCCCEEec------chhhCCCCCEEE
Confidence 478999999999999999999999999998763 5899999999999999999999999997 478999999999
Q ss_pred EcCCCCCHHHHHHHHhcCCcEEeccCchhHHHHHHHHHHhhCCCeEEEEecCCCceeeeecccC--C--cEEEEcChhhH
Q 017886 102 LPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFA--G--KYIIVKNMKEA 177 (364)
Q Consensus 102 IrAHGv~~~v~~~l~~~g~~iiDaTCP~V~kv~~~v~~~~~~Gy~iIIiG~~~HpEv~gi~g~~--~--~~~vv~~~~e~ 177 (364)
|||||+||+++++|++||++|||||||||+|+|++|++++++||+|||||+++||||+|++||+ + .++||++++|+
T Consensus 83 irAHGv~~~v~~~a~~rgl~iiDATCP~V~Kvh~~v~~~~~~Gy~iiiiG~~~HpEV~G~~G~~~~~~g~~~vV~~~edv 162 (328)
T 3szu_A 83 FSAHGVSQAVRNEAKSRDLTVFDATCPLVTKVHMEVARASRRGEESILIGHAGHPQVEGTMGQYSNPEGGMYLVESPDDV 162 (328)
T ss_dssp ECTTCCCHHHHHHHHHTTCEEEECCCHHHHHHHHHHHHHHHHTCEEEEESCTTCHHHHHHHTTCCCTTSCEEEECSHHHH
T ss_pred EECCCCCHHHHHHHHHCCCEEEECCCcchHHHHHHHHHHHhCCCEEEEEccCCCceEEeecccccCCCCcEEEECCHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999 3 58999999999
Q ss_pred HHhhhhhcCCCCCCCCChHHHHHHHHHhhhcCCCCCCCCCceEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccc
Q 017886 178 EYVCDYILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHF 257 (364)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~ 257 (364)
+.+. + .+++|+++++||||+.++|.+|+++|+++|+... +
T Consensus 163 ~~l~-------------------------------~-~~~~kv~~vsQTT~s~~~~~~iv~~L~~r~p~i~--------~ 202 (328)
T 3szu_A 163 WKLT-------------------------------V-KNEEKLSFMTQTTLSVDDTSDVIDALRKRFPKIV--------G 202 (328)
T ss_dssp HHCC-------------------------------C-SCTTSEEEEECTTSCHHHHHHHHHHHHHHCTTCB--------C
T ss_pred HhCC-------------------------------c-CCCCeEEEEEecCCcHHHHHHHHHHHHHhCcccc--------c
Confidence 7751 1 1236899999999999999999999998655442 2
Q ss_pred cccccccHHHHHHHHHHHHhhhhCCCEEEEEcCCCCchhHHHHHHHHhhCCCeEEeCCCCccCCCCcchhhhccchhhhh
Q 017886 258 ISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEK 337 (364)
Q Consensus 258 ~v~nTIC~AT~~RQ~a~~eLa~~~vD~miVVGGknSSNT~rL~eia~~~~~~t~~Ie~~~eL~~~~~~~~~~~~~~~~~~ 337 (364)
..+||||+||++||+|+++|| +++|+||||||+|||||+||+|||++.|+++||||+++||++
T Consensus 203 ~~~ntIC~AT~~RQ~av~~lA-~~vD~miVVGg~nSSNT~rL~eia~~~g~~ty~Ie~~~el~~---------------- 265 (328)
T 3szu_A 203 PRKDDICYATTNRQEAVRALA-EQAEVVLVVGSKNSSNSNRLAELAQRMGKRAFLIDDAKDIQE---------------- 265 (328)
T ss_dssp CSSCSCCHHHHHHHHHHHHHH-HHCSEEEEECCTTCHHHHHHHHHHHHTTCEEEEESSGGGCCH----------------
T ss_pred CCCCCcCHHHHHHHHHHHHHH-HhCCEEEEeCCCCCchHHHHHHHHHHhCCCEEEeCChHHCCH----------------
Confidence 348999999999999999999 689999999999999999999999999999999999999999
Q ss_pred cccCCCCCCEEEEEeCCCCCHHHHhcC
Q 017886 338 ENWLPKGQITIGITSGASTPDKVISSA 364 (364)
Q Consensus 338 ~~wl~~~~~~VGITAGASTP~~lI~e~ 364 (364)
+|| .++.+||||||||||+|||++|
T Consensus 266 -~wl-~g~~~VGITAGASTP~~lieeV 290 (328)
T 3szu_A 266 -EWV-KEVKCVGVTAGASAPDILVQNV 290 (328)
T ss_dssp -HHH-TTCSEEEEEECTTCCHHHHHHH
T ss_pred -HHh-CCCCEEEEeecCCCCHHHHHHH
Confidence 999 7999999999999999999985
No 3
>3szu_A ISPH, 4-hydroxy-3-methylbut-2-ENYL diphosphate reductas; 3Fe-4S iron-sulfur cluster, conserved cysteine, IPP and DMAP production final STEP; HET: H6P; 1.40A {Escherichia coli} PDB: 3szl_A* 3f7t_A* 3szo_A* 3t0f_A* 3t0g_A* 3urk_A* 3utc_A* 3utd_A* 3uv3_A* 3uv6_A* 3uv7_A* 3uwm_A* 3ke8_A* 3ke9_A* 3kef_A* 3kel_A 3kem_A*
Probab=94.43 E-value=0.53 Score=45.99 Aligned_cols=172 Identities=13% Similarity=0.178 Sum_probs=125.7
Q ss_pred cccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHHc-----CcEEecCCccccccccccCCCEEEEcCCCCCHH
Q 017886 36 CWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEM-----AVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVE 110 (364)
Q Consensus 36 C~GV~RAi~~a~~~~~~~~~~~vy~lG~iIHN~~Vv~~L~~~-----Gv~~v~~~~~~~~~~~l~~g~~VIIrAHGv~~~ 110 (364)
|.=|.++=+.+.+..++ +..|...|.==| |+|..-+-.- ++.+|++.++.+.|+.-.+....++.=-=.+.+
T Consensus 108 CP~V~Kvh~~v~~~~~~--Gy~iiiiG~~~H-pEV~G~~G~~~~~~g~~~vV~~~edv~~l~~~~~~kv~~vsQTT~s~~ 184 (328)
T 3szu_A 108 CPLVTKVHMEVARASRR--GEESILIGHAGH-PQVEGTMGQYSNPEGGMYLVESPDDVWKLTVKNEEKLSFMTQTTLSVD 184 (328)
T ss_dssp CHHHHHHHHHHHHHHHH--TCEEEEESCTTC-HHHHHHHTTCCCTTSCEEEECSHHHHHHCCCSCTTSEEEEECTTSCHH
T ss_pred CcchHHHHHHHHHHHhC--CCEEEEEccCCC-ceEEeecccccCCCCcEEEECCHHHHHhCCcCCCCeEEEEEecCCcHH
Confidence 66677777777777766 457999999888 8888877544 477777654332232111134556666555554
Q ss_pred ----HHHHHHhcCCcE----EeccCchhHHHHHHHHHHhhCCCeEEEEecCCCceeeeecccC----CcEEEEcChhhHH
Q 017886 111 ----EMVTLNNKNVQI----VDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFA----GKYIIVKNMKEAE 178 (364)
Q Consensus 111 ----v~~~l~~~g~~i----iDaTCP~V~kv~~~v~~~~~~Gy~iIIiG~~~HpEv~gi~g~~----~~~~vv~~~~e~~ 178 (364)
+.+.|+++.-.+ .|+-|.-...=|..+++++++-.-+|++|.++-.-+.=+...| ..++.|++.+|++
T Consensus 185 ~~~~iv~~L~~r~p~i~~~~~ntIC~AT~~RQ~av~~lA~~vD~miVVGg~nSSNT~rL~eia~~~g~~ty~Ie~~~el~ 264 (328)
T 3szu_A 185 DTSDVIDALRKRFPKIVGPRKDDICYATTNRQEAVRALAEQAEVVLVVGSKNSSNSNRLAELAQRMGKRAFLIDDAKDIQ 264 (328)
T ss_dssp HHHHHHHHHHHHCTTCBCCSSCSCCHHHHHHHHHHHHHHHHCSEEEEECCTTCHHHHHHHHHHHHTTCEEEEESSGGGCC
T ss_pred HHHHHHHHHHHhCcccccCCCCCcCHHHHHHHHHHHHHHHhCCEEEEeCCCCCchHHHHHHHHHHhCCCEEEeCChHHCC
Confidence 566778877655 4999999999999999999999999999999877776555433 3579999999875
Q ss_pred HhhhhhcCCCCCCCCChHHHHHHHHHhhhcCCCCCCCCCceEEEEEcCCCChHHHHHHHHHHHH
Q 017886 179 YVCDYILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLVEK 242 (364)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kv~vvsQTT~~~~~~~~i~~~l~~ 242 (364)
. ++ |+ ..++||+.+=+.-+....++++++|+.
T Consensus 265 ~------------------~w---l~-----------g~~~VGITAGASTP~~lieeVi~~l~~ 296 (328)
T 3szu_A 265 E------------------EW---VK-----------EVKCVGVTAGASAPDILVQNVVARLQQ 296 (328)
T ss_dssp H------------------HH---HT-----------TCSEEEEEECTTCCHHHHHHHHHHHHH
T ss_pred H------------------HH---hC-----------CCCEEEEeecCCCCHHHHHHHHHHHHH
Confidence 3 11 11 125899999999999999999999976
No 4
>3dnf_A ISPH, LYTB, 4-hydroxy-3-methylbut-2-ENYL diphosphate reductas; trilobal strucure, open alpha/beta, iron, iron-sulfur, isopr biosynthesis; 1.65A {Aquifex aeolicus}
Probab=94.39 E-value=0.96 Score=43.60 Aligned_cols=169 Identities=16% Similarity=0.106 Sum_probs=125.9
Q ss_pred cccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHHc-----CcEEecCCccccccccccCCC-EEEEcCCCCCH
Q 017886 36 CWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEM-----AVQNIPVEEGKKQFDVVNKGD-VVVLPAFGAAV 109 (364)
Q Consensus 36 C~GV~RAi~~a~~~~~~~~~~~vy~lG~iIHN~~Vv~~L~~~-----Gv~~v~~~~~~~~~~~l~~g~-~VIIrAHGv~~ 109 (364)
|.=|.+.=+.+.+..++ +..|...|.==| |+|..-+-.- ++.+|++.++ ++.++..+ ..++.=--.+.
T Consensus 96 CP~V~Kvh~~v~~~~~~--Gy~iiiiG~~~H-pEV~G~~g~~~~~~~~~~vV~~~ed---~~~l~~~~kv~~vsQTT~s~ 169 (297)
T 3dnf_A 96 CPYVKAVHEAVCQLTRE--GYFVVLVGEKNH-PEVIGTLGYLRACNGKGIVVETLED---IGEALKHERVGIVAQTTQNE 169 (297)
T ss_dssp CHHHHHHHHHHHHHHHT--TCEEEEESCTTC-HHHHHHHHHHHHTTCCEEEESSGGG---GGGGGGCSEEEEEECTTCCH
T ss_pred CcchHHHHHHHHHHHhC--CCEEEEEecCCC-ceEEeeccccccCCCcEEEEcCHHH---HHhcCCCCcEEEEEecCCcH
Confidence 67777777777777765 457999999888 8888776443 5777876543 34444333 44566555555
Q ss_pred H----HHHHHHhcC--CcEEeccCchhHHHHHHHHHHhhCCCeEEEEecCCCceeeeecccC----CcEEEEcChhhHHH
Q 017886 110 E----EMVTLNNKN--VQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFA----GKYIIVKNMKEAEY 179 (364)
Q Consensus 110 ~----v~~~l~~~g--~~iiDaTCP~V~kv~~~v~~~~~~Gy~iIIiG~~~HpEv~gi~g~~----~~~~vv~~~~e~~~ 179 (364)
+ +.+.|++|. +.+.|+-|.-...=|..+++++++-.-+|++|.++-.-+.=+...| ..++.|++.+|++.
T Consensus 170 ~~~~~iv~~L~~r~p~~~~~~tIC~AT~~RQ~av~~la~~~D~miVVGg~nSSNT~rL~eia~~~~~~ty~Ie~~~el~~ 249 (297)
T 3dnf_A 170 EFFKEVVGEIALWVKEVKVINTICNATSLRQESVKKLAPEVDVMIIIGGKNSGNTRRLYYISKELNPNTYHIETAEELQP 249 (297)
T ss_dssp HHHHHHHHHHHHHSSEEEEECCCCSHHHHHHHHHHHHGGGSSEEEEESCTTCHHHHHHHHHHHHHCSSEEEESSGGGCCG
T ss_pred HHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHhhCCEEEEECCCCCchhHHHHHHHHhcCCCEEEeCChHHCCH
Confidence 4 456677764 5578999999999999999999999999999999887766665443 35899999998753
Q ss_pred hhhhhcCCCCCCCCChHHHHHHHHHhhhcCCCCCCCCCceEEEEEcCCCChHHHHHHHHHHHH
Q 017886 180 VCDYILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLVEK 242 (364)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kv~vvsQTT~~~~~~~~i~~~l~~ 242 (364)
+|+ + ..++||+.+=+.-+....++++++|+.
T Consensus 250 -------------------------~wl----~---~~~~VGITAGASTP~~li~eVi~~l~~ 280 (297)
T 3dnf_A 250 -------------------------EWF----R---GVKRVGISAGASTPDWIIEQVKSRIQE 280 (297)
T ss_dssp -------------------------GGG----T---TCSEEEEEECTTCCHHHHHHHHHHHHH
T ss_pred -------------------------HHh----C---CCCEEEEeecCCCCHHHHHHHHHHHHH
Confidence 111 1 125899999999999999999999875
No 5
>2xdq_A Light-independent protochlorophyllide reductase S; oxidoreductase, DPOR, (bacterio)chlorophyll biosynthesis, photosynthesis; 2.40A {Thermosynechococcus elongatus}
Probab=82.64 E-value=20 Score=35.43 Aligned_cols=104 Identities=13% Similarity=0.172 Sum_probs=64.4
Q ss_pred ceEEEEeCCCCCcccHHHHHHHHHHHHhhC-------------------------------------CCCceEEeccccc
Q 017886 24 NVKVKLAESYGFCWGVERAVQIAYEARKQF-------------------------------------PEEKIWITNEIIH 66 (364)
Q Consensus 24 ~mkI~lA~~~GFC~GV~RAi~~a~~~~~~~-------------------------------------~~~~vy~lG~iIH 66 (364)
+..|+.+...||..+...+.+.|.+++-++ ..+.|-.+|.+
T Consensus 128 ~ipVi~v~~~Gf~~~~~~G~~~a~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vnilG~~-- 205 (460)
T 2xdq_A 128 GIPIVVARANGLDYAFTQGEDTVLAAMAARCPTSTAISDPEERNPIQRLLNFGKKKEEVQAQSSQYHPHPPLVLFGSL-- 205 (460)
T ss_dssp SSCEEEEECCTTTCCTTHHHHHHHHHHHTTCCCCC-----------------------------CCCSCCCEEEESCC--
T ss_pred CCcEEEEecCCccccHHHHHHHHHHHHHHHhhccccccccccccccccccccccccccccccccccCCCCcEEEEEec--
Confidence 357888899999866666666655544221 12368899987
Q ss_pred CHHH----HHHHHHcCcEEecC--CccccccccccCCCEEEEcCCCCCHHHHHHH-HhcCCcEEeccCchh
Q 017886 67 NPTV----NKRLEEMAVQNIPV--EEGKKQFDVVNKGDVVVLPAFGAAVEEMVTL-NNKNVQIVDTTCPWV 130 (364)
Q Consensus 67 N~~V----v~~L~~~Gv~~v~~--~~~~~~~~~l~~g~~VIIrAHGv~~~v~~~l-~~~g~~iiDaTCP~V 130 (364)
|+.. ..-|++.|+.++.- ....+++..++.....+.-.+-.. ..-+.| ++.|+..+....|+-
T Consensus 206 ~~~~~~ei~~lL~~~Gi~v~~~~~~~~~~el~~~~~A~~ni~~~~~~~-~~A~~Le~~~giP~~~~~~P~G 275 (460)
T 2xdq_A 206 PDPVVTQLTLELKKQGIKVSGWLPAKRYTELPVIDEGYYVAGVNPFLS-RTATTLIRRRKCQLITAPFPIG 275 (460)
T ss_dssp CHHHHHHHHHHHGGGTCCEEEEESCSSGGGCCCCCTTCEEEESSTTCH-HHHHHHHHTTCCEEECCCCSBH
T ss_pred CccHHHHHHHHHHHcCCeEEEEeCCCCHHHHHccccCcEEEEcCHhHH-HHHHHHHHHcCCCceecCcCcc
Confidence 7763 55678999987641 122234444444444444333333 445555 667899999988985
No 6
>3jx9_A Putative phosphoheptose isomerase; YP_001815198.1, structura genomics, joint center for structural genomics, JCSG; HET: MSE; 1.95A {Exiguobacterium sibiricum 255-15}
Probab=79.41 E-value=5.3 Score=35.18 Aligned_cols=68 Identities=13% Similarity=0.126 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHHc-----CcEEecCCccccccccccCCCEE-EEcCCCCCHHHH
Q 017886 39 VERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEM-----AVQNIPVEEGKKQFDVVNKGDVV-VLPAFGAAVEEM 112 (364)
Q Consensus 39 V~RAi~~a~~~~~~~~~~~vy~lG~iIHN~~Vv~~L~~~-----Gv~~v~~~~~~~~~~~l~~g~~V-IIrAHGv~~~v~ 112 (364)
+++|.++.-+++.. ++.||++|- =|-.-+.+..-.+ |+..+. +..++.++|+| ||+..|..+...
T Consensus 24 I~~AA~llaqai~~--~g~IyvfG~-Ghs~~~~~e~~~~~e~l~~~~~~~------~~~~i~~~D~vii~S~Sg~n~~~i 94 (170)
T 3jx9_A 24 LFDVVRLLAQALVG--QGKVYLDAY-GEFEGLYPMLSDGPDQMKRVTKIK------DHKTLHAVDRVLIFTPDTERSDLL 94 (170)
T ss_dssp HHHHHHHHHHHHHT--TCCEEEEEC-GGGGGGTHHHHTSTTCCTTEEECC------TTCCCCTTCEEEEEESCSCCHHHH
T ss_pred HHHHHHHHHHHHhC--CCEEEEECC-CcHHHHHHHHHcccCCccchhhhh------hcCCCCCCCEEEEEeCCCCCHHHH
Confidence 45666666666654 468999983 4544443333222 222221 12366778875 799999998766
Q ss_pred HHH
Q 017886 113 VTL 115 (364)
Q Consensus 113 ~~l 115 (364)
+.+
T Consensus 95 e~A 97 (170)
T 3jx9_A 95 ASL 97 (170)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 7
>3d8t_A Uroporphyrinogen-III synthase; heme biosynthesis, lyase; 1.60A {Thermus thermophilus} PDB: 3d8r_A 3d8s_A 3d8n_A
Probab=79.02 E-value=32 Score=31.54 Aligned_cols=117 Identities=11% Similarity=0.006 Sum_probs=69.5
Q ss_pred cchHHHHHHHcCCccccc-ceEEEEeC--------------CCCCcccHHHHHHHHHHHHhhC--------CCCceEEec
Q 017886 6 TSDIIKKLKENGFEYTWG-NVKVKLAE--------------SYGFCWGVERAVQIAYEARKQF--------PEEKIWITN 62 (364)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~-~mkI~lA~--------------~~GFC~GV~RAi~~a~~~~~~~--------~~~~vy~lG 62 (364)
.+.+.+.|++.|+....- .+++.-.. ..+.-|==.+||+...+.+.+. .+.++|+.|
T Consensus 44 ~~~l~~~L~~~G~~v~~~P~i~i~~~~~~~l~~~l~~l~~~~d~lifTS~naV~~~~~~l~~~~~~~~~~l~~~~i~aVG 123 (286)
T 3d8t_A 44 KEEFKALAEKLGFTPLLFPVQATEKVPVPEYRDQVRELAQGVDLFLATTGVGVRDLLEAGKALGLDLEGPLAKAFRLARG 123 (286)
T ss_dssp HHHHHHHHHHHTCEEEECCCEEEEEEECTTHHHHHHHHTTCCSEEEECCHHHHHHHHHHHHHTTCCCHHHHHHSEEEESS
T ss_pred hHHHHHHHHHCCCeEEEeeeEEEecCCHHHHHHHHHhhccCCCEEEEECHHHHHHHHHHHHHcCchHHHHhcCCeEEEEC
Confidence 577899999999765543 34554211 1222222244444443333211 024799998
Q ss_pred ccccCHHHHHHHHHcCcEE--ecCCccccccccccCCC-E-EEEcCCCCCHHHHHHHHhcCCcEEeccC
Q 017886 63 EIIHNPTVNKRLEEMAVQN--IPVEEGKKQFDVVNKGD-V-VVLPAFGAAVEEMVTLNNKNVQIVDTTC 127 (364)
Q Consensus 63 ~iIHN~~Vv~~L~~~Gv~~--v~~~~~~~~~~~l~~g~-~-VIIrAHGv~~~v~~~l~~~g~~iiDaTC 127 (364)
+ ..-+.|++.|+.. +...+...-++.+.+|. . ++.|+-+-.+...+.|+++|..|....|
T Consensus 124 ~-----~Ta~aL~~~G~~~~~~p~~~~e~L~~~l~~g~~~vLi~r~~~~~~~L~~~L~~~G~~v~~~~~ 187 (286)
T 3d8t_A 124 A-----KAARALKEAGLPPHAVGDGTSKSLLPLLPQGRGVAALQLYGKPLPLLENALAERGYRVLPLMP 187 (286)
T ss_dssp H-----HHHHHHHHTTCCCSEECSSSGGGGGGGCCCCCSEEEEECSSSCCHHHHHHHHHTTCEEEEECS
T ss_pred H-----HHHHHHHHcCCCccccccccHHHHHHHHHcCCceEEEEccCcccHHHHHHHHHCCCEEEEEEE
Confidence 4 5568999999863 32111112233344465 4 5678888888999999999999866554
No 8
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=75.64 E-value=15 Score=33.75 Aligned_cols=91 Identities=10% Similarity=0.172 Sum_probs=58.9
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHH-HHHHHhhh--hCCCEEEEEcCCCCc
Q 017886 218 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVE--EKVDLILVVGGWNSS 294 (364)
Q Consensus 218 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ-~a~~eLa~--~~vD~miVVGGknSS 294 (364)
.+|+++.-...+-.-|..+.+-+++...+. + -++.+.++ .....+| +.+..|.+ +.+|.+|+++ .++
T Consensus 4 ~~Ig~i~p~~~~~~f~~~~~~g~~~~a~~~-g-----~~~~~~~~--~~~~~~~~~~i~~~i~~~~~vDgiIi~~--~~~ 73 (350)
T 3h75_A 4 TSVVFLNPGNSTETFWVSYSQFMQAAARDL-G-----LDLRILYA--ERDPQNTLQQARELFQGRDKPDYLMLVN--EQY 73 (350)
T ss_dssp CEEEEEECSCTTCHHHHHHHHHHHHHHHHH-T-----CEEEEEEC--TTCHHHHHHHHHHHHHSSSCCSEEEEEC--CSS
T ss_pred CEEEEECCCCCCChHHHHHHHHHHHHHHHc-C-----CeEEEEEC--CCCHHHHHHHHHHHHhcCCCCCEEEEeC--chh
Confidence 479998877655466788888777643332 2 23444432 2233444 34555654 3899999986 334
Q ss_pred hhHHHHHHHHhhCCCeEEeCCCCc
Q 017886 295 NTSHLQEIAEDRGIPSYWIDSEKR 318 (364)
Q Consensus 295 NT~rL~eia~~~~~~t~~Ie~~~e 318 (364)
....+++.+.+.|.|...+.+..+
T Consensus 74 ~~~~~~~~~~~~giPvV~~~~~~~ 97 (350)
T 3h75_A 74 VAPQILRLSQGSGIKLFIVNSPLT 97 (350)
T ss_dssp HHHHHHHHHTTSCCEEEEEESCCC
T ss_pred hHHHHHHHHHhCCCcEEEEcCCCC
Confidence 566777888889999999987543
No 9
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=74.92 E-value=43 Score=29.40 Aligned_cols=127 Identities=10% Similarity=0.091 Sum_probs=71.1
Q ss_pred ceEEEEEcCC----CChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHHHHHHH-hhhhCCCEEEEEcCCC
Q 017886 218 VKVGIANQTT----MLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYK-MVEEKVDLILVVGGWN 292 (364)
Q Consensus 218 ~kv~vvsQTT----~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ~a~~e-La~~~vD~miVVGGkn 292 (364)
..|+++...+ ++-.-|..+.+-+.+...+. + -++.++++- ...++|..+.+ |....+|.+|+++...
T Consensus 9 ~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~-g-----~~~~~~~~~--~~~~~~~~~~~~~~~~~vdgiIi~~~~~ 80 (292)
T 3k4h_A 9 KTLGLVMPSSASKAFQNPFFPEVIRGISSFAHVE-G-----YALYMSTGE--TEEEIFNGVVKMVQGRQIGGIILLYSRE 80 (292)
T ss_dssp CEEEEECSSCHHHHTTSTHHHHHHHHHHHHHHHT-T-----CEEEECCCC--SHHHHHHHHHHHHHTTCCCEEEESCCBT
T ss_pred CEEEEEecCCccccccCHHHHHHHHHHHHHHHHc-C-----CEEEEEeCC--CCHHHHHHHHHHHHcCCCCEEEEeCCCC
Confidence 5799987763 44456777877776643332 2 234444433 23344444433 4346899999987654
Q ss_pred CchhHHHHHHHHhhCCCeEEeCCCCccCC-CCcchhhh-ccchhhhhcccC-CCCCCEEEEEeCCCCC
Q 017886 293 SSNTSHLQEIAEDRGIPSYWIDSEKRIGP-GNKIAYKL-MHGELVEKENWL-PKGQITIGITSGASTP 357 (364)
Q Consensus 293 SSNT~rL~eia~~~~~~t~~Ie~~~eL~~-~~~~~~~~-~~~~~~~~~~wl-~~~~~~VGITAGASTP 357 (364)
+. .+++.+++.+.|...+.+..+-.. -..+.... ..|.. -.++| ..|.++|++..|....
T Consensus 81 ~~---~~~~~l~~~~iPvV~~~~~~~~~~~~~~V~~D~~~~g~~--a~~~L~~~G~~~i~~i~~~~~~ 143 (292)
T 3k4h_A 81 ND---RIIQYLHEQNFPFVLIGKPYDRKDEITYVDNDNYTAARE--VAEYLISLGHKQIAFIGGGSDL 143 (292)
T ss_dssp TC---HHHHHHHHTTCCEEEESCCSSCTTTSCEEECCHHHHHHH--HHHHHHHTTCCCEEEEESCTTB
T ss_pred Ch---HHHHHHHHCCCCEEEECCCCCCCCCCCEEEECcHHHHHH--HHHHHHHCCCceEEEEeCcccc
Confidence 32 466677788999999987643221 11111110 11111 11222 1478899999887543
No 10
>3aek_A Light-independent protochlorophyllide reductase S; iron/sulfur cluster, oxidoreductase, bacteriochlorophyll biosynthesis; HET: PMR; 2.30A {Rhodobacter capsulatus} PDB: 3aeq_A* 3aes_A* 3aer_A* 3aet_A 3aeu_A
Probab=74.68 E-value=22 Score=35.12 Aligned_cols=104 Identities=11% Similarity=0.124 Sum_probs=63.3
Q ss_pred ceEEEEeCCCCCcccHHHHHHHHHHHHhhC----CCCceEEecccccC--HHHHHHHHHcCcEEecCCcccccccccc--
Q 017886 24 NVKVKLAESYGFCWGVERAVQIAYEARKQF----PEEKIWITNEIIHN--PTVNKRLEEMAVQNIPVEEGKKQFDVVN-- 95 (364)
Q Consensus 24 ~mkI~lA~~~GFC~GV~RAi~~a~~~~~~~----~~~~vy~lG~iIHN--~~Vv~~L~~~Gv~~v~~~~~~~~~~~l~-- 95 (364)
+..|+-+...||-.--....+.|.+++-+. +...|-.+|++--+ .++..-|+++|+.++.-.+.. .++++.
T Consensus 148 ~~pVi~v~t~gf~g~~~~G~~~a~~al~~~~~~~~~~~VNilG~~~~~~~~eik~lL~~~Gi~v~~~~~~~-~~~ei~~~ 226 (437)
T 3aek_A 148 HVRVYSYTGSGLDTTFTQGEDTCLAAMVPTLDTTEAAELIVVGALPDVVEDQCLSLLTQLGVGPVRMLPAR-RSDIEPAV 226 (437)
T ss_dssp TCEEEEEECCTTTCCTTHHHHHHHHHHGGGSCBCCCCCEEEESCCCHHHHHHHHHHHHHTTCCCEEEESCS-SGGGCCCB
T ss_pred CCeEEEeECCCCCCcHHHHHHHHHHHHHHHhcccCCCcEEEEeCCChhHHHHHHHHHHHcCCceEEEcCCC-CHHHHHhh
Confidence 467888888888643344445554443321 23579999996444 255666799999876432222 455554
Q ss_pred -CCC-EEEEcCCCCCHHHHHHHHhcCCcEEeccCchh
Q 017886 96 -KGD-VVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWV 130 (364)
Q Consensus 96 -~g~-~VIIrAHGv~~~v~~~l~~~g~~iiDaTCP~V 130 (364)
+.. ++++...+ ...-+.|++.|+..+..+.|+-
T Consensus 227 ~~A~~niv~~~~~--~~~A~~Le~~GiP~i~~~~P~G 261 (437)
T 3aek_A 227 GPNTRFILAQPFL--GETTGALERRGAKRIAAPFPFG 261 (437)
T ss_dssp CTTCEEEESSTTC--HHHHHHHHHTTCEECCCCCSCH
T ss_pred hcCcEEEEECccH--HHHHHHHHHcCCCeEecCCCcC
Confidence 333 34444433 4444555888999999989873
No 11
>1s3l_A Hypothetical protein MJ0936; phosphodiesterase, nuclease, structural genomics, BSGC struc funded by NIH; 2.40A {Methanocaldococcus jannaschii} SCOP: d.159.1.7 PDB: 1s3m_A 1s3n_A 2ahd_A
Probab=74.42 E-value=12 Score=32.50 Aligned_cols=63 Identities=11% Similarity=0.080 Sum_probs=34.7
Q ss_pred CCcccccc-eEEEEe-CCCCCcccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHHcC--cEEecC
Q 017886 17 GFEYTWGN-VKVKLA-ESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMA--VQNIPV 84 (364)
Q Consensus 17 ~~~~~~~~-mkI~lA-~~~GFC~GV~RAi~~a~~~~~~~~~~~vy~lG~iIHN~~Vv~~L~~~G--v~~v~~ 84 (364)
+.+.++.+ |+|.+. ..-|- ..+++.+.+.+++.....|+.+|+|+. |.+++.|++.+ +.+|..
T Consensus 17 ~~~~~~~g~m~i~~iSD~Hg~----~~~l~~~l~~~~~~~~D~ii~~GDl~~-~~~~~~l~~l~~~~~~V~G 83 (190)
T 1s3l_A 17 TENLYFQGHMKIGIMSDTHDH----LPNIRKAIEIFNDENVETVIHCGDFVS-LFVIKEFENLNANIIATYG 83 (190)
T ss_dssp ---------CEEEEECCCTTC----HHHHHHHHHHHHHSCCSEEEECSCCCS-THHHHHGGGCSSEEEEECC
T ss_pred ccChhhcCCeEEEEEeeCCCC----HHHHHHHHHHHhhcCCCEEEECCCCCC-HHHHHHHHhcCCCEEEEeC
Confidence 35666776 887655 44442 345555544444322357999999985 67899998654 455554
No 12
>1wcw_A Uroporphyrinogen III synthase; congenital erythropoietic porph structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} PDB: 1wd7_A 1wcx_A
Probab=73.92 E-value=44 Score=29.81 Aligned_cols=117 Identities=11% Similarity=-0.003 Sum_probs=69.2
Q ss_pred cchHHHHHHHcCCccccc-ceEEEEe--------------CCCCCcccHHHHHHHHHHHHhhC--------CCCceEEec
Q 017886 6 TSDIIKKLKENGFEYTWG-NVKVKLA--------------ESYGFCWGVERAVQIAYEARKQF--------PEEKIWITN 62 (364)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~-~mkI~lA--------------~~~GFC~GV~RAi~~a~~~~~~~--------~~~~vy~lG 62 (364)
.+.+.+.|++.|+....- .+++.-. ...+.-|==.+||+...+.+.+. .+.++|+.|
T Consensus 19 ~~~l~~~L~~~G~~~~~~P~i~i~~~~~~~l~~~~~~l~~~~d~iiftS~~aV~~~~~~l~~~~~~~~~~l~~~~i~avG 98 (261)
T 1wcw_A 19 KEAFKALAEKLGFTPLLFPVQATEKVPVPEYRDQVRALAQGVDLFLATTGVGVRDLLEAGKALGLDLEGPLAKAFRLARG 98 (261)
T ss_dssp HHHHHHHHHHTTCEEEECCCEEEEECCGGGGHHHHHHHHTCCSEEEECCHHHHHHHHHHHHHTTCCCHHHHHHSEEEESS
T ss_pred hHHHHHHHHHCCCcEEEeccEEEecCCHHHHHHHHHhhccCCCEEEEeCHHHHHHHHHHHHHhCchHHHHhcCCeEEEEC
Confidence 567889999998765443 3455421 11222333344555444433221 024799988
Q ss_pred ccccCHHHHHHHHHcCcEE--ecCCccccccccccCCC-E-EEEcCCCCCHHHHHHHHhcCCcEEeccC
Q 017886 63 EIIHNPTVNKRLEEMAVQN--IPVEEGKKQFDVVNKGD-V-VVLPAFGAAVEEMVTLNNKNVQIVDTTC 127 (364)
Q Consensus 63 ~iIHN~~Vv~~L~~~Gv~~--v~~~~~~~~~~~l~~g~-~-VIIrAHGv~~~v~~~l~~~g~~iiDaTC 127 (364)
+ ..-+.|++.|+.. +...+...-++.+.+|. . ++.|+-+-.+...+.|+++|..|....|
T Consensus 99 ~-----~Ta~~l~~~G~~~~~~p~~~~e~L~~~l~~g~~~vL~~r~~~~~~~L~~~L~~~G~~v~~~~~ 162 (261)
T 1wcw_A 99 A-----KAARALKEAGLPPHAVGDGTSKSLLPLLPQGRGVAALQLYGKPLPLLENALAERGYRVLPLMP 162 (261)
T ss_dssp H-----HHHHHHHHTTCCCSEECSSSHHHHGGGSCCCCEEEEEECCSSCCHHHHHHHHHTTEEEEEECS
T ss_pred H-----HHHHHHHHcCCCCCcccCccHHHHHHHHHcCCceEEEEccCcccHHHHHHHHHCCCEEEEEee
Confidence 5 5568899999863 22111111223333365 4 5678888889999999999988865554
No 13
>4eyg_A Twin-arginine translocation pathway signal; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: VNL; 1.86A {Rhodopseudomonas palustris} PDB: 4ey3_A* 3t0n_A* 4eyk_A*
Probab=73.46 E-value=15 Score=33.65 Aligned_cols=93 Identities=13% Similarity=0.173 Sum_probs=58.1
Q ss_pred eEEEEEcCC-CChHHHHHHHHHHHHHHhhhccc--ccccccccccccccHHHHHHHHHHHHhhh-hCCCEEEEEcCCCCc
Q 017886 219 KVGIANQTT-MLKGETEEIGKLVEKTMMRKFGV--ENVNEHFISFNTICDATQERQDAMYKMVE-EKVDLILVVGGWNSS 294 (364)
Q Consensus 219 kv~vvsQTT-~~~~~~~~i~~~l~~~~~~~~~~--~~~~~~~~v~nTIC~AT~~RQ~a~~eLa~-~~vD~miVVGGknSS 294 (364)
+|+++.-.| -...-...+.+.++..+.+. +. ....-++.+.|+-|.....++ ++++|.. ..||+ |||...|+
T Consensus 8 ~IG~~~p~sg~~~~~g~~~~~g~~~a~~~~-~~~i~G~~i~l~~~D~~~~~~~~~~-~~~~li~~~~v~~--iiG~~~s~ 83 (368)
T 4eyg_A 8 KVGLIVPMTGGQASTGKQIDNAIKLYIKKH-GDTVAGKKIEVILKDDAAIPDNTKR-LAQELIVNDKVNV--IAGFGITP 83 (368)
T ss_dssp EEEEEECSSSTTHHHHHHHHHHHHHHHHHH-CSEETTEEEEEEEEECTTCHHHHHH-HHHHHHHTSCCSE--EEECSSHH
T ss_pred EEEEEeCCcCcchhccHHHHHHHHHHHHHc-CCCCCCeEEEEEEeCCCCCHHHHHH-HHHHHHhcCCcEE--EECCCccH
Confidence 788776544 33333445555554433322 11 001125778899887766544 4466653 46766 55888899
Q ss_pred hhHHHHHHHHhhCCCeEEeCC
Q 017886 295 NTSHLQEIAEDRGIPSYWIDS 315 (364)
Q Consensus 295 NT~rL~eia~~~~~~t~~Ie~ 315 (364)
.+..+.+++.+.+.|.+....
T Consensus 84 ~~~~~~~~~~~~~ip~i~~~~ 104 (368)
T 4eyg_A 84 AALAAAPLATQAKVPEIVMAA 104 (368)
T ss_dssp HHHHHHHHHHHHTCCEEESSC
T ss_pred HHHHHHHHHHhCCceEEeccC
Confidence 999999999999999877654
No 14
>3o3m_B Beta subunit 2-hydroxyacyl-COA dehydratase; atypical dehydratase, lyase; 1.82A {Clostridium difficile} PDB: 3o3n_B* 3o3o_B
Probab=72.67 E-value=3.8 Score=40.08 Aligned_cols=53 Identities=15% Similarity=0.264 Sum_probs=42.9
Q ss_pred CCCCcccHHHHHHHHHHHHhh---CC-----CCceEEecccccCHHHHHHHHHcCcEEecC
Q 017886 32 SYGFCWGVERAVQIAYEARKQ---FP-----EEKIWITNEIIHNPTVNKRLEEMAVQNIPV 84 (364)
Q Consensus 32 ~~GFC~GV~RAi~~a~~~~~~---~~-----~~~vy~lG~iIHN~~Vv~~L~~~Gv~~v~~ 84 (364)
..+||+|.+++.+..++.+++ .+ +.+|+..|-.+.|+.+.+.|++.|+.+|-+
T Consensus 198 ~~~~~~~~~~~~~~~~~l~~el~~~~~~~~~~~RI~~~G~~~~~~~l~~~le~~Ga~VV~~ 258 (385)
T 3o3m_B 198 KSGFFMRKEEHTELVKDLIAKLNAMPEEVCSGKKVLLTGILADSKDILDILEDNNISVVAD 258 (385)
T ss_dssp HGGGGSCHHHHHHHHHHHHHHHHHSCCCCCSSEEEEEEESCCCCHHHHHHHHHTTEEEEEE
T ss_pred HhheeCCHHHHHHHHHHHHHHHHhhhhcCCCCceEEEECCCCCcHHHHHHHHHCCCEEEEE
Confidence 457999999999988765432 11 237999999999999999999999999864
No 15
>2k1g_A Lipoprotein SPR; solution structure, bacterial lipoprotein, cysteine PEPT NPLC/P60 family, construct optimized, membrane, palmitate; NMR {Escherichia coli}
Probab=72.61 E-value=3.1 Score=35.33 Aligned_cols=76 Identities=24% Similarity=0.472 Sum_probs=49.9
Q ss_pred CCccccchHHHHHHH-cCCcccccceEEEEeCCCCC-cccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHHcC
Q 017886 1 MNQEYTSDIIKKLKE-NGFEYTWGNVKVKLAESYGF-CWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMA 78 (364)
Q Consensus 1 ~~~~y~~~~~~~~~~-~~~~~~~~~mkI~lA~~~GF-C~GV~RAi~~a~~~~~~~~~~~vy~lG~iIHN~~Vv~~L~~~G 78 (364)
|+.+-++.|++..++ .|.|+.||+. .+.|| |.|.-+ .+++.. .+ |--|..-....+.|
T Consensus 1 mn~~~~~~ii~~a~~~lG~PY~wGG~-----~~~G~DCSGlv~---~vy~~~--~G----------i~lPr~s~~q~~~g 60 (135)
T 2k1g_A 1 MNVDVKSRIMDQYADWKGVRYRLGGS-----TKKGIDCSGFVQ---RTFREQ--FG----------LELPRSTYEQQEMG 60 (135)
T ss_dssp CCCCHHHHHHHHHHHHTTCCCCSSCC-----BTTBCCHHHHHH---HHHHHT--TC----------CCCCSSHHHHGGGS
T ss_pred CCHhHHHHHHHHHHHHCCCCccCCCc-----CCCCceeHHHHH---HHHHHc--CC----------CCCCCCHHHHhhCC
Confidence 677778889888776 4999999984 57899 999644 333221 11 22244445556666
Q ss_pred cEEecCCccccccccccCCCEEEEcC
Q 017886 79 VQNIPVEEGKKQFDVVNKGDVVVLPA 104 (364)
Q Consensus 79 v~~v~~~~~~~~~~~l~~g~~VIIrA 104 (364)
-. |+ .+++.+||.|+++.
T Consensus 61 ~~-V~-------~~~l~pGDLvFf~~ 78 (135)
T 2k1g_A 61 KS-VS-------RSNLRTGDLVLFRA 78 (135)
T ss_dssp EE-EC-------GGGCCTTEEEEEEE
T ss_pred cE-ec-------HHHccCCcEEEECC
Confidence 44 32 46778899998874
No 16
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=71.85 E-value=22 Score=31.66 Aligned_cols=86 Identities=13% Similarity=0.058 Sum_probs=54.8
Q ss_pred eEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHH-HHHHHhhhhCCCEEEEEcCCCCchhH
Q 017886 219 KVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSNTS 297 (364)
Q Consensus 219 kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ-~a~~eLa~~~vD~miVVGGknSSNT~ 297 (364)
+|+++..+ ++-.-|..+.+-+.+...+. + -++.+.++ + ...+| +.++.|.+..+|.+|+.+.. ++...
T Consensus 4 ~Ig~i~~~-~~~~~~~~~~~gi~~~a~~~-g-----~~~~~~~~--~-~~~~~~~~i~~l~~~~vdgiii~~~~-~~~~~ 72 (306)
T 8abp_A 4 KLGFLVKQ-PEEPWFQTEWKFADKAGKDL-G-----FEVIKIAV--P-DGEKTLNAIDSLAASGAKGFVICTPD-PKLGS 72 (306)
T ss_dssp EEEEEESC-TTSHHHHHHHHHHHHHHHHH-T-----EEEEEEEC--C-SHHHHHHHHHHHHHTTCCEEEEECSC-GGGHH
T ss_pred EEEEEeCC-CCchHHHHHHHHHHHHHHHc-C-----CEEEEeCC--C-CHHHHHHHHHHHHHcCCCEEEEeCCC-chhhH
Confidence 78888764 44456777877776643332 2 23444554 2 33344 44555555789999988743 33455
Q ss_pred HHHHHHHhhCCCeEEeCC
Q 017886 298 HLQEIAEDRGIPSYWIDS 315 (364)
Q Consensus 298 rL~eia~~~~~~t~~Ie~ 315 (364)
.+.+.+++.+.|...+.+
T Consensus 73 ~~~~~~~~~~iPvV~~~~ 90 (306)
T 8abp_A 73 AIVAKARGYDMKVIAVDD 90 (306)
T ss_dssp HHHHHHHHTTCEEEEESS
T ss_pred HHHHHHHHCCCcEEEeCC
Confidence 666777788999999985
No 17
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=71.20 E-value=26 Score=30.40 Aligned_cols=128 Identities=13% Similarity=0.077 Sum_probs=69.0
Q ss_pred eEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHH-HHHHHhhhhC-CCEEEEEcCCCCchh
Q 017886 219 KVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEK-VDLILVVGGWNSSNT 296 (364)
Q Consensus 219 kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ-~a~~eLa~~~-vD~miVVGGknSSNT 296 (364)
+|+++.-.. +-.-|..+.+-+++...+. + -++.+.++-......+| +.++.|.+.. +|.+|+.+. .+..+
T Consensus 2 ~Ig~i~~~~-~~~~~~~~~~gi~~~~~~~-g-----~~~~~~~~~~~~~~~~~~~~i~~l~~~~~vdgii~~~~-~~~~~ 73 (276)
T 3ksm_A 2 KLLLVLKGD-SNAYWRQVYLGAQKAADEA-G-----VTLLHRSTKDDGDIAGQIQILSYHLSQAPPDALILAPN-SAEDL 73 (276)
T ss_dssp EEEEECSCS-SSTHHHHHHHHHHHHHHHH-T-----CEEEECCCSSTTCHHHHHHHHHHHHHHSCCSEEEECCS-STTTT
T ss_pred eEEEEeCCC-CChHHHHHHHHHHHHHHHc-C-----CEEEEECCCCCCCHHHHHHHHHHHHHhCCCCEEEEeCC-CHHHH
Confidence 567776543 3345677777776643332 2 23444443223344444 4555665567 999998875 33445
Q ss_pred HHHHHHHHhhCCCeEEeCCCCccCCC-Ccchhhh-ccchh-h-hhcccCCC--CCCEEEEEeCCC
Q 017886 297 SHLQEIAEDRGIPSYWIDSEKRIGPG-NKIAYKL-MHGEL-V-EKENWLPK--GQITIGITSGAS 355 (364)
Q Consensus 297 ~rL~eia~~~~~~t~~Ie~~~eL~~~-~~~~~~~-~~~~~-~-~~~~wl~~--~~~~VGITAGAS 355 (364)
...++.+.+.+.|...+.+..+-... ..+.... ..|.. . .-.+.+ . |.++||+..|..
T Consensus 74 ~~~~~~~~~~~ipvV~~~~~~~~~~~~~~V~~d~~~~g~~~~~~l~~~~-~~~G~~~i~~i~~~~ 137 (276)
T 3ksm_A 74 TPSVAQYRARNIPVLVVDSDLAGDAHQGLVATDNYAAGQLAARALLATL-DLSKERNIALLRLRA 137 (276)
T ss_dssp HHHHHHHHHTTCCEEEESSCCSSSCSSEEEECCHHHHHHHHHHHHHHHS-CTTSCEEEEECBCCT
T ss_pred HHHHHHHHHCCCcEEEEecCCCCCCcceEEccCHHHHHHHHHHHHHHhc-CcCCCceEEEEEcCC
Confidence 56667777889999999865432210 0111110 11211 1 011112 3 789999998864
No 18
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=69.71 E-value=54 Score=29.26 Aligned_cols=127 Identities=7% Similarity=0.054 Sum_probs=70.3
Q ss_pred ceEEEEEcCC----CChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHHHHH-HHhhhhCCCEEEEEcCCC
Q 017886 218 VKVGIANQTT----MLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAM-YKMVEEKVDLILVVGGWN 292 (364)
Q Consensus 218 ~kv~vvsQTT----~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ~a~-~eLa~~~vD~miVVGGkn 292 (364)
..|+++.... ++-.-|.++.+-+.+...+. + -++.++++- ...++|..+ +.|....+|.+|+.+...
T Consensus 23 ~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~-g-----~~~~~~~~~--~~~~~~~~~~~~l~~~~vdgiIi~~~~~ 94 (305)
T 3huu_A 23 LTIGLIQKSSAPEIRQNPFNSDVLNGINQACNVR-G-----YSTRMTVSE--NSGDLYHEVKTMIQSKSVDGFILLYSLK 94 (305)
T ss_dssp CEEEEECSCCSHHHHTSHHHHHHHHHHHHHHHHH-T-----CEEEECCCS--SHHHHHHHHHHHHHTTCCSEEEESSCBT
T ss_pred CEEEEEeCCCccccccCcHHHHHHHHHHHHHHHC-C-----CEEEEEeCC--CChHHHHHHHHHHHhCCCCEEEEeCCcC
Confidence 5789887652 44455777777776643332 2 234444332 233444443 344446899999987654
Q ss_pred CchhHHHHHHHHhhCCCeEEeCCCCccCCCCcchhhh-ccchhhhhcccC-CCCCCEEEEEeCCCCC
Q 017886 293 SSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKL-MHGELVEKENWL-PKGQITIGITSGASTP 357 (364)
Q Consensus 293 SSNT~rL~eia~~~~~~t~~Ie~~~eL~~~~~~~~~~-~~~~~~~~~~wl-~~~~~~VGITAGASTP 357 (364)
+. .+++.+++.+.|...+++..+-+....+.... ..|..- -++| ..|.++||+-+|....
T Consensus 95 ~~---~~~~~l~~~~iPvV~i~~~~~~~~~~~V~~D~~~~g~~a--~~~L~~~G~~~I~~i~~~~~~ 156 (305)
T 3huu_A 95 DD---PIEHLLNEFKVPYLIVGKSLNYENIIHIDNDNIDAAYQL--TQYLYHLGHRHILFLQESGHY 156 (305)
T ss_dssp TC---HHHHHHHHTTCCEEEESCCCSSTTCCEEECCHHHHHHHH--HHHHHHTTCCSEEEEEESSCB
T ss_pred Cc---HHHHHHHHcCCCEEEECCCCcccCCcEEEeCHHHHHHHH--HHHHHHCCCCeEEEEcCCccc
Confidence 43 45666667899999998865322111111110 112111 1222 2478999999886543
No 19
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=69.60 E-value=19 Score=32.18 Aligned_cols=124 Identities=12% Similarity=0.141 Sum_probs=68.8
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHHHHHHHhhhhCCCEEEEEcCCCCchhH
Q 017886 218 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTS 297 (364)
Q Consensus 218 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ~a~~eLa~~~vD~miVVGGknSSNT~ 297 (364)
..|+++. .++-.-|.++.+-+.+...+. + -++.++++--... -.+.+..|.+..+|.+|+.+...+.
T Consensus 13 ~~Igvi~--~~~~~~~~~~~~gi~~~a~~~-g-----~~~~~~~~~~~~~--~~~~~~~l~~~~vdgiIi~~~~~~~--- 79 (289)
T 3k9c_A 13 RLLGVVF--ELQQPFHGDLVEQIYAAATRR-G-----YDVMLSAVAPSRA--EKVAVQALMRERCEAAILLGTRFDT--- 79 (289)
T ss_dssp CEEEEEE--ETTCHHHHHHHHHHHHHHHHT-T-----CEEEEEEEBTTBC--HHHHHHHHTTTTEEEEEEETCCCCH---
T ss_pred CEEEEEE--ecCCchHHHHHHHHHHHHHHC-C-----CEEEEEeCCCCHH--HHHHHHHHHhCCCCEEEEECCCCCH---
Confidence 5799998 556667888888887643332 2 2334433322221 2244555555789999999876544
Q ss_pred HHHHHHHhhCCCeEEeCCCCccCCCCcchhhh-ccchhhhhcccC-CCCCCEEEEEeCCCCC
Q 017886 298 HLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKL-MHGELVEKENWL-PKGQITIGITSGASTP 357 (364)
Q Consensus 298 rL~eia~~~~~~t~~Ie~~~eL~~~~~~~~~~-~~~~~~~~~~wl-~~~~~~VGITAGASTP 357 (364)
..++...+ +.|...+++..+-+.-..+.... ..|.. --++| ..|.++||+..|...+
T Consensus 80 ~~~~~~~~-~iPvV~i~~~~~~~~~~~V~~D~~~~~~~--a~~~L~~~G~~~I~~i~~~~~~ 138 (289)
T 3k9c_A 80 DELGALAD-RVPALVVARASGLPGVGAVRGDDVAGITL--AVDHLTELGHRNIAHIDGADAP 138 (289)
T ss_dssp HHHHHHHT-TSCEEEESSCCSSTTSEEEEECHHHHHHH--HHHHHHHTTCCSEEEECCTTST
T ss_pred HHHHHHHc-CCCEEEEcCCCCCCCCCEEEeChHHHHHH--HHHHHHHCCCCcEEEEeCCCCc
Confidence 33444445 89999998754322111011000 11211 11222 2478999999987654
No 20
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=66.99 E-value=65 Score=28.17 Aligned_cols=124 Identities=10% Similarity=0.059 Sum_probs=70.5
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHHH-HHHHhhhhCCCEEEEEcCCCCchh
Q 017886 218 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQD-AMYKMVEEKVDLILVVGGWNSSNT 296 (364)
Q Consensus 218 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ~-a~~eLa~~~vD~miVVGGknSSNT 296 (364)
..|+++.... +-.-|..+.+.+.+...+. +-++.++++ .....+|. .++.|.+..+|.+|+.+...
T Consensus 8 ~~Igvi~~~~-~~~~~~~~~~gi~~~~~~~------g~~~~~~~~--~~~~~~~~~~~~~l~~~~vdgiIi~~~~~---- 74 (276)
T 3jy6_A 8 KLIAVIVANI-DDYFSTELFKGISSILESR------GYIGVLFDA--NADIEREKTLLRAIGSRGFDGLILQSFSN---- 74 (276)
T ss_dssp CEEEEEESCT-TSHHHHHHHHHHHHHHHTT------TCEEEEEEC--TTCHHHHHHHHHHHHTTTCSEEEEESSCC----
T ss_pred cEEEEEeCCC-CchHHHHHHHHHHHHHHHC------CCEEEEEeC--CCCHHHHHHHHHHHHhCCCCEEEEecCCc----
Confidence 5788887654 5556788888777643332 223443332 22234443 34445456899999998765
Q ss_pred HHHHHHHHhhCCCeEEeCCCCccCCCCcchhhh-ccchhhhhcccC-CCCCCEEEEEeCCCC
Q 017886 297 SHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKL-MHGELVEKENWL-PKGQITIGITSGAST 356 (364)
Q Consensus 297 ~rL~eia~~~~~~t~~Ie~~~eL~~~~~~~~~~-~~~~~~~~~~wl-~~~~~~VGITAGAST 356 (364)
..+++.+++.+.|...+++..+-..-..+.... ..|.. .-++| ..|.++||+-+|...
T Consensus 75 ~~~~~~l~~~~iPvV~i~~~~~~~~~~~V~~D~~~~g~~--a~~~L~~~G~~~I~~i~~~~~ 134 (276)
T 3jy6_A 75 PQTVQEILHQQMPVVSVDREMDACPWPQVVTDNFEAAKA--ATTAFRQQGYQHVVVLTSELE 134 (276)
T ss_dssp HHHHHHHHTTSSCEEEESCCCTTCSSCEEECCHHHHHHH--HHHHHHTTTCCEEEEEEECST
T ss_pred HHHHHHHHHCCCCEEEEecccCCCCCCEEEEChHHHHHH--HHHHHHHcCCCeEEEEecCCC
Confidence 566667778899999998754322111111110 11111 11222 247899999988654
No 21
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=66.38 E-value=32 Score=30.96 Aligned_cols=125 Identities=15% Similarity=0.100 Sum_probs=66.1
Q ss_pred eEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHH-HHHHHhhhhCCCEEEEEcCCCCchhH
Q 017886 219 KVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSNTS 297 (364)
Q Consensus 219 kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ-~a~~eLa~~~vD~miVVGGknSSNT~ 297 (364)
+|+++..++-+ -|..+.+-+++...+. + -++.+.+. ......+| +.++.|....+|.+|+.+.. ++...
T Consensus 3 ~Ig~i~~~~~~--~~~~~~~gi~~~~~~~-g-----~~~~~~~~-~~~~~~~~~~~i~~l~~~~vdgiIi~~~~-~~~~~ 72 (313)
T 2h3h_A 3 TIGVIGKSVHP--YWSQVEQGVKAAGKAL-G-----VDTKFFVP-QKEDINAQLQMLESFIAEGVNGIAIAPSD-PTAVI 72 (313)
T ss_dssp EEEEECSCSSH--HHHHHHHHHHHHHHHH-T-----CEEEEECC-SSSCHHHHHHHHHHHHHTTCSEEEECCSS-TTTTH
T ss_pred EEEEEeCCCcH--HHHHHHHHHHHHHHHc-C-----CEEEEECC-CCCCHHHHHHHHHHHHHcCCCEEEEeCCC-hHHHH
Confidence 68888765543 6777777776643322 2 22333221 02223444 34555555689999987654 33334
Q ss_pred HHHHHHHhhCCCeEEeCCCCcc-CCCCcchhhh-ccchhhhhcccCC---CCCCEEEEEeCCC
Q 017886 298 HLQEIAEDRGIPSYWIDSEKRI-GPGNKIAYKL-MHGELVEKENWLP---KGQITIGITSGAS 355 (364)
Q Consensus 298 rL~eia~~~~~~t~~Ie~~~eL-~~~~~~~~~~-~~~~~~~~~~wl~---~~~~~VGITAGAS 355 (364)
..++.+.+.+.|...+.+..+- +....+.... ..|+. .-+||- .|.++|++..|..
T Consensus 73 ~~~~~~~~~~iPvV~~~~~~~~~~~~~~V~~d~~~~g~~--a~~~L~~~~~G~~~I~~i~~~~ 133 (313)
T 2h3h_A 73 PTIKKALEMGIPVVTLDTDSPDSGRYVYIGTDNYQAGYT--AGLIMKELLGGKGKVVIGTGSL 133 (313)
T ss_dssp HHHHHHHHTTCCEEEESSCCTTSCCSCEEECCHHHHHHH--HHHHHHHHHTSCSEEEEEESCS
T ss_pred HHHHHHHHCCCeEEEeCCCCCCcceeEEECcCHHHHHHH--HHHHHHHHcCCCCEEEEEECCC
Confidence 4556666788999988875321 1100111110 12221 112221 2789999998863
No 22
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=66.13 E-value=33 Score=30.65 Aligned_cols=126 Identities=10% Similarity=0.127 Sum_probs=69.7
Q ss_pred ceEEEEEcC---CCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHHHHHHH-hhhhCCCEEEEEcCCCC
Q 017886 218 VKVGIANQT---TMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYK-MVEEKVDLILVVGGWNS 293 (364)
Q Consensus 218 ~kv~vvsQT---T~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ~a~~e-La~~~vD~miVVGGknS 293 (364)
..|+++.-. .++-.-|.++.+-+.+...+. +-++.++++ .. ..+|..+.+ |.+..+|.+|+.+...+
T Consensus 7 ~~Igvi~~~~~~~~~~~~~~~~~~gi~~~a~~~------g~~~~~~~~--~~-~~~~~~~~~~l~~~~vdGiIi~~~~~~ 77 (294)
T 3qk7_A 7 DAIALAYPSRPRVLNNSTFLEMISWIGIELGKR------GLDLLLIPD--EP-GEKYQSLIHLVETRRVDALIVAHTQPE 77 (294)
T ss_dssp CEEEEEEESCSGGGSCHHHHHHHHHHHHHHHHT------TCEEEEEEE--CT-TCCCHHHHHHHHHTCCSEEEECSCCSS
T ss_pred ceEEEEecCCCccccChhHHHHHHHHHHHHHHC------CCEEEEEeC--CC-hhhHHHHHHHHHcCCCCEEEEeCCCCC
Confidence 578888752 445566788888777643332 223444433 11 334444444 43458999999887654
Q ss_pred chhHHHHHHHHhhCCCeEEeCCCCccCCCCcchhhh-ccchhhhhcccC-CCCCCEEEEEeCCCCC
Q 017886 294 SNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKL-MHGELVEKENWL-PKGQITIGITSGASTP 357 (364)
Q Consensus 294 SNT~rL~eia~~~~~~t~~Ie~~~eL~~~~~~~~~~-~~~~~~~~~~wl-~~~~~~VGITAGASTP 357 (364)
. ..++.+.+.+.|...+....+-..-..+.... ..|..- -++| ..|.++||+-+|....
T Consensus 78 ~---~~~~~l~~~~iPvV~~~~~~~~~~~~~V~~D~~~~~~~a--~~~L~~~G~~~I~~i~~~~~~ 138 (294)
T 3qk7_A 78 D---FRLQYLQKQNFPFLALGRSHLPKPYAWFDFDNHAGASLA--VKRLLELGHQRIAFVSTDARI 138 (294)
T ss_dssp C---HHHHHHHHTTCCEEEESCCCCSSCCEEEEECHHHHHHHH--HHHHHHTTCCCEEEEEESSCC
T ss_pred h---HHHHHHHhCCCCEEEECCCCCCCCCCEEEcChHHHHHHH--HHHHHHCCCceEEEEeCCccc
Confidence 4 45556667889999998753222211111100 112111 1222 2478999999887543
No 23
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=65.18 E-value=59 Score=29.56 Aligned_cols=127 Identities=13% Similarity=0.148 Sum_probs=71.1
Q ss_pred ceEEEEEcCC-CChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHHH-HHHHhhhhCCCEEEEEcCCCCch
Q 017886 218 VKVGIANQTT-MLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQD-AMYKMVEEKVDLILVVGGWNSSN 295 (364)
Q Consensus 218 ~kv~vvsQTT-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ~-a~~eLa~~~vD~miVVGGknSSN 295 (364)
..|+++...+ ++-.-|.++.+-+.+...+. +-++.++++ ....++|. .+..|....+|.+|+.+...+
T Consensus 62 ~~Igvi~~~~~~~~~~~~~~~~gi~~~a~~~------g~~~~~~~~--~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~-- 131 (338)
T 3dbi_A 62 QTLGLVVTNTLYHGIYFSELLFHAARMAEEK------GRQLLLADG--KHSAEEERQAIQYLLDLRCDAIMIYPRFLS-- 131 (338)
T ss_dssp SEEEEEECTTTTSTTHHHHHHHHHHHHHHHT------TCEEEEEEC--TTSHHHHHHHHHHHHHTTCSEEEECCSSSC--
T ss_pred CEEEEEecCCcccChhHHHHHHHHHHHHHHC------CCEEEEEeC--CCChHHHHHHHHHHHhCCCCEEEEeCCCCC--
Confidence 5788887652 34455777777776643322 223444442 22334443 445555568999999876444
Q ss_pred hHHHHHHHHhhCCCeEEeCCCCccCCCCcchhhh-ccchhhhhcccC-CCCCCEEEEEeCCCC
Q 017886 296 TSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKL-MHGELVEKENWL-PKGQITIGITSGAST 356 (364)
Q Consensus 296 T~rL~eia~~~~~~t~~Ie~~~eL~~~~~~~~~~-~~~~~~~~~~wl-~~~~~~VGITAGAST 356 (364)
...+.+.+++.+.|...+....+-.....+.... ..|.. --++| ..|.++||+-+|...
T Consensus 132 ~~~~~~~~~~~~iPvV~~~~~~~~~~~~~V~~D~~~~~~~--a~~~L~~~G~~~I~~i~~~~~ 192 (338)
T 3dbi_A 132 VDEIDDIIDAHSQPIMVLNRRLRKNSSHSVWCDHKQTSFN--AVAELINAGHQEIAFLTGSMD 192 (338)
T ss_dssp HHHHHHHHHHCSSCEEEESSCCSSSGGGEECBCHHHHHHH--HHHHHHHTTCCSEEEECCCTT
T ss_pred hHHHHHHHHcCCCCEEEEcCCCCCCCCCEEEEChHHHHHH--HHHHHHHCCCCEEEEEeCCCC
Confidence 3568888888889998887643221100011000 11111 11222 248899999988643
No 24
>3ipc_A ABC transporter, substrate binding protein (amino; venus flytrap domain, transport protein; 1.30A {Agrobacterium tumefaciens} PDB: 3ip5_A 3ip6_A 3ip7_A 3ip9_A 3ipa_A
Probab=63.37 E-value=30 Score=31.49 Aligned_cols=58 Identities=22% Similarity=0.225 Sum_probs=42.7
Q ss_pred ccccccccccHHHHHHHHHHHHhhhhCCCEEEEEcCCCCchhHHHHHHHHhhCCCeEEeCC
Q 017886 255 EHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDS 315 (364)
Q Consensus 255 ~~~~v~nTIC~AT~~RQ~a~~eLa~~~vD~miVVGGknSSNT~rL~eia~~~~~~t~~Ie~ 315 (364)
-++.+.|+-|.....++ ++++|....||+ |||...|+.+..+.+++.+.+.|.+...+
T Consensus 44 ~~l~~~d~~~~~~~~~~-~~~~l~~~~v~~--iig~~~s~~~~~~~~~~~~~~ip~v~~~~ 101 (356)
T 3ipc_A 44 IKIVLGDDVSDPKQGIS-VANKFVADGVKF--VVGHANSGVSIPASEVYAENGILEITPAA 101 (356)
T ss_dssp EEEEEEECTTCHHHHHH-HHHHHHHTTCCE--EEECSSHHHHHHHHHHHHTTTCEEEESSC
T ss_pred EEEEEecCCCCHHHHHH-HHHHHHHCCCcE--EEcCCCcHHHHHHHHHHHhCCCeEEecCC
Confidence 35667888887766544 445555466776 78888999999999999999988776443
No 25
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=63.31 E-value=50 Score=29.28 Aligned_cols=128 Identities=11% Similarity=-0.026 Sum_probs=69.3
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccc-cccccHHHHHHH-HHHHHhhhhCCCEEEEEcCCCCch
Q 017886 218 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFIS-FNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSN 295 (364)
Q Consensus 218 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~v-~nTIC~AT~~RQ-~a~~eLa~~~vD~miVVGGknSSN 295 (364)
++++++....-+ .-|..+.+-+++...+. + -++.+ .++ .....+| +.+..|.+..+|.+|+.+...+..
T Consensus 5 ~~I~~i~~~~~~-~~~~~~~~gi~~~a~~~-g-----~~~~~~~~~--~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~ 75 (305)
T 3g1w_A 5 ETYMMITFQSGM-DYWKRCLKGFEDAAQAL-N-----VTVEYRGAA--QYDIQEQITVLEQAIAKNPAGIAISAIDPVEL 75 (305)
T ss_dssp CEEEEEESSTTS-THHHHHHHHHHHHHHHH-T-----CEEEEEECS--SSCHHHHHHHHHHHHHHCCSEEEECCSSTTTT
T ss_pred ceEEEEEccCCC-hHHHHHHHHHHHHHHHc-C-----CEEEEeCCC--cCCHHHHHHHHHHHHHhCCCEEEEcCCCHHHH
Confidence 578888876544 45777777776643332 2 22333 222 2233444 344555457899999987654433
Q ss_pred hHHHHHHHHhhCCCeEEeCCCCccCC-CCcchhhh-ccchh-h-hhcccCCCCCCEEEEEeCCCC
Q 017886 296 TSHLQEIAEDRGIPSYWIDSEKRIGP-GNKIAYKL-MHGEL-V-EKENWLPKGQITIGITSGAST 356 (364)
Q Consensus 296 T~rL~eia~~~~~~t~~Ie~~~eL~~-~~~~~~~~-~~~~~-~-~~~~wl~~~~~~VGITAGAST 356 (364)
..+++-+.+.+.|...+++..+-.. ...+.... ..|.. . .-.+.+ .|.++||+-.|...
T Consensus 76 -~~~~~~~~~~~iPvV~~~~~~~~~~~~~~V~~d~~~~g~~~~~~l~~~~-~g~~~i~~i~~~~~ 138 (305)
T 3g1w_A 76 -TDTINKAVDAGIPIVLFDSGAPDSHAHSFLGTNNYNAGMNAAYKMAELL-DGEGEVAVITLPNQ 138 (305)
T ss_dssp -HHHHHHHHHTTCCEEEESSCCTTSCCSCEEECCHHHHHHHHHHHHHHHT-TTCEEEEEEECTTC
T ss_pred -HHHHHHHHHCCCcEEEECCCCCCCceeEEECcCHHHHHHHHHHHHHHHh-CCCcEEEEEeCCCc
Confidence 4455566678899999987543211 11111111 11211 1 111122 37899999988654
No 26
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=63.18 E-value=74 Score=27.45 Aligned_cols=126 Identities=12% Similarity=0.112 Sum_probs=68.9
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHHHH-HHHhhhhCCCEEEEEcCCCCchh
Q 017886 218 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDA-MYKMVEEKVDLILVVGGWNSSNT 296 (364)
Q Consensus 218 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ~a-~~eLa~~~vD~miVVGGknSSNT 296 (364)
..|+++..+. +-.-|..+.+-+.+...+. + -++.++++ ....++|.. ++.|.+..+|.+|+.+.... +
T Consensus 3 ~~Igvi~~~~-~~~~~~~~~~gi~~~a~~~-g-----~~~~~~~~--~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~-~- 71 (272)
T 3o74_A 3 RTLGFILPDL-ENPSYARIAKQLEQGARAR-G-----YQLLIASS--DDQPDSERQLQQLFRARRCDALFVASCLPP-E- 71 (272)
T ss_dssp CEEEEEESCT-TCHHHHHHHHHHHHHHHHT-T-----CEEEEEEC--TTCHHHHHHHHHHHHHTTCSEEEECCCCCS-S-
T ss_pred eEEEEEeCCC-cChhHHHHHHHHHHHHHHC-C-----CEEEEEeC--CCCHHHHHHHHHHHHHcCCCEEEEecCccc-c-
Confidence 4788887664 4455777887777643332 2 23444332 223345533 44454568999998876422 2
Q ss_pred HHHHHHHHhhCCCeEEeCCCCccCCCCcchhhh-ccchhhhhcccC-CCCCCEEEEEeCCCC
Q 017886 297 SHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKL-MHGELVEKENWL-PKGQITIGITSGAST 356 (364)
Q Consensus 297 ~rL~eia~~~~~~t~~Ie~~~eL~~~~~~~~~~-~~~~~~~~~~wl-~~~~~~VGITAGAST 356 (364)
...++.+++.+.|...+.+..+-..-..+.... ..|.. .-++| ..|.++|++.+|...
T Consensus 72 ~~~~~~~~~~~iPvV~~~~~~~~~~~~~V~~d~~~~~~~--a~~~L~~~G~~~i~~i~~~~~ 131 (272)
T 3o74_A 72 DDSYRELQDKGLPVIAIDRRLDPAHFCSVISDDRDASRQ--LAASLLSSAPRSIALIGARPE 131 (272)
T ss_dssp CCHHHHHHHTTCCEEEESSCCCTTTCEEEEECHHHHHHH--HHHHHHTTCCSEEEEEEECTT
T ss_pred HHHHHHHHHcCCCEEEEccCCCccccCEEEEchHHHHHH--HHHHHHHCCCcEEEEEecCCC
Confidence 445566677899999998754321100011000 11111 11222 247899999988654
No 27
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=63.01 E-value=76 Score=27.78 Aligned_cols=91 Identities=16% Similarity=0.145 Sum_probs=56.9
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHH-HHHHHhhhhCCCEEEEEcCCCCchh
Q 017886 218 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSNT 296 (364)
Q Consensus 218 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ-~a~~eLa~~~vD~miVVGGknSSNT 296 (364)
..|+++.... +-.-|..+.+-+.+...+. + -++.++++ .....+| +.+..|.+..+|.+|+.+.. ++..
T Consensus 9 ~~Ig~i~~~~-~~~~~~~~~~gi~~~a~~~-g-----~~~~~~~~--~~~~~~~~~~~~~l~~~~vdgiI~~~~~-~~~~ 78 (293)
T 3l6u_A 9 NIVGFTIVND-KHEFAQRLINAFKAEAKAN-K-----YEALVATS--QNSRISEREQILEFVHLKVDAIFITTLD-DVYI 78 (293)
T ss_dssp CEEEEEESCS-CSHHHHHHHHHHHHHHHHT-T-----CEEEEEEC--SSCHHHHHHHHHHHHHTTCSEEEEECSC-TTTT
T ss_pred cEEEEEEecC-CcHHHHHHHHHHHHHHHHc-C-----CEEEEECC--CCCHHHHHHHHHHHHHcCCCEEEEecCC-hHHH
Confidence 5799988654 4456777777776643322 2 23444433 2233455 44555555789999998754 3444
Q ss_pred HHHHHHHHhhCCCeEEeCCCCc
Q 017886 297 SHLQEIAEDRGIPSYWIDSEKR 318 (364)
Q Consensus 297 ~rL~eia~~~~~~t~~Ie~~~e 318 (364)
..+++.+.+.+.|...+.+..+
T Consensus 79 ~~~~~~~~~~~iPvV~~~~~~~ 100 (293)
T 3l6u_A 79 GSAIEEAKKAGIPVFAIDRMIR 100 (293)
T ss_dssp HHHHHHHHHTTCCEEEESSCCC
T ss_pred HHHHHHHHHcCCCEEEecCCCC
Confidence 4666677788999999987544
No 28
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=62.59 E-value=40 Score=30.29 Aligned_cols=90 Identities=19% Similarity=0.123 Sum_probs=56.4
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHH-HHHHHhhhhCCCEEEEEcCCCCchh
Q 017886 218 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSNT 296 (364)
Q Consensus 218 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ-~a~~eLa~~~vD~miVVGGknSSNT 296 (364)
.+|+++..+. +-.-|.++.+-+.+...+. +-++.+++ +.....+| +.+..|...++|.+|+.+.. +...
T Consensus 4 ~~Igvi~~~~-~~~~~~~~~~gi~~~a~~~------g~~~~~~~--~~~~~~~~~~~i~~~~~~~vdgiIi~~~~-~~~~ 73 (330)
T 3uug_A 4 GSVGIAMPTK-SSARWIDDGNNIVKQLQEA------GYKTDLQY--ADDDIPNQLSQIENMVTKGVKVLVIASID-GTTL 73 (330)
T ss_dssp CEEEEEECCS-SSTHHHHHHHHHHHHHHHT------TCEEEEEE--CTTCHHHHHHHHHHHHHHTCSEEEECCSS-GGGG
T ss_pred cEEEEEeCCC-cchHHHHHHHHHHHHHHHc------CCEEEEee--CCCCHHHHHHHHHHHHHcCCCEEEEEcCC-chhH
Confidence 4788887654 3345777877777643332 22344444 33344455 34455545789999987654 3444
Q ss_pred HHHHHHHHhhCCCeEEeCCCC
Q 017886 297 SHLQEIAEDRGIPSYWIDSEK 317 (364)
Q Consensus 297 ~rL~eia~~~~~~t~~Ie~~~ 317 (364)
...++.+.+.|.|...+.+..
T Consensus 74 ~~~~~~~~~~giPvV~~~~~~ 94 (330)
T 3uug_A 74 SDVLKQAGEQGIKVIAYDRLI 94 (330)
T ss_dssp HHHHHHHHHTTCEEEEESSCC
T ss_pred HHHHHHHHHCCCCEEEECCCC
Confidence 566677778899999998754
No 29
>3hut_A Putative branched-chain amino acid ABC transporter; extracellular ligand-binding receptor,transport protein; 1.93A {Rhodospirillum rubrum atcc 11170}
Probab=62.10 E-value=25 Score=32.03 Aligned_cols=95 Identities=18% Similarity=0.149 Sum_probs=56.5
Q ss_pred ceEEEEEcCC-CChHHHHHHHHHHHHHHhhhc--c-cccccccccccccccHHHHHHHHHHHHhh-hhCCCEEEEEcCCC
Q 017886 218 VKVGIANQTT-MLKGETEEIGKLVEKTMMRKF--G-VENVNEHFISFNTICDATQERQDAMYKMV-EEKVDLILVVGGWN 292 (364)
Q Consensus 218 ~kv~vvsQTT-~~~~~~~~i~~~l~~~~~~~~--~-~~~~~~~~~v~nTIC~AT~~RQ~a~~eLa-~~~vD~miVVGGkn 292 (364)
-+|+++.-.| ....-+.++...++..+.+.- + .....-++.+.||-|.....+ +++++|. ...|| .|||...
T Consensus 5 i~IG~i~p~sg~~~~~~~~~~~g~~~a~~~~n~~ggi~G~~~~l~~~d~~~~~~~~~-~~~~~l~~~~~v~--~iig~~~ 81 (358)
T 3hut_A 5 LLLGYELPLTGANAAYGRVFQEAARLQLDRFNAAGGVGGRPVDILYADSRDDADQAR-TIARAFVDDPRVV--GVLGDFS 81 (358)
T ss_dssp EEEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHTTTBTTBCEEEEEEECTTCHHHHH-HHHHHHHHCTTEE--EEEECSS
T ss_pred EEEEEEeccCCchhhcCHHHHHHHHHHHHHHHhhCCCCCeEEEEEEecCCCCHHHHH-HHHHHHhccCCcE--EEEcCCC
Confidence 3788776544 333334555555543222210 0 000113566778888765554 4455665 34454 4568888
Q ss_pred CchhHHHHHHHHhhCCCeEEeCC
Q 017886 293 SSNTSHLQEIAEDRGIPSYWIDS 315 (364)
Q Consensus 293 SSNT~rL~eia~~~~~~t~~Ie~ 315 (364)
|+.+..+.+++.+.+.|.+....
T Consensus 82 s~~~~~~~~~~~~~~iP~v~~~~ 104 (358)
T 3hut_A 82 STVSMAAGSIYGKEGMPQLSPTA 104 (358)
T ss_dssp HHHHHHHHHHHHHHTCCEEESSC
T ss_pred cHHHHHHHHHHHHCCCcEEecCC
Confidence 88899999999999999887644
No 30
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=62.02 E-value=84 Score=27.71 Aligned_cols=127 Identities=9% Similarity=-0.014 Sum_probs=68.0
Q ss_pred ceEEEEEcCCCC-hHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHHHHHHHhh-hhCCCEEEEEcCCCCch
Q 017886 218 VKVGIANQTTML-KGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMV-EEKVDLILVVGGWNSSN 295 (364)
Q Consensus 218 ~kv~vvsQTT~~-~~~~~~i~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ~a~~eLa-~~~vD~miVVGGknSSN 295 (364)
..|+++.-..-. -.-|.++++-+.+...+. +-++.++++--. .+.+..+.++. +..+|.+|+.+...+.
T Consensus 9 ~~Igvv~~~~~~~~~~~~~~~~gi~~~a~~~------g~~~~~~~~~~~--~~~~~~~~~~l~~~~vdgiIi~~~~~~~- 79 (288)
T 3gv0_A 9 NVIALVLSVDEELMGFTSQMVFGITEVLSTT------QYHLVVTPHIHA--KDSMVPIRYILETGSADGVIISKIEPND- 79 (288)
T ss_dssp CEEEEECBCCCCSSCHHHHHHHHHHHHHTTS------SCEEEECCBSSG--GGTTHHHHHHHHHTCCSEEEEESCCTTC-
T ss_pred CEEEEEecCCccccHHHHHHHHHHHHHHHHc------CCEEEEecCCcc--hhHHHHHHHHHHcCCccEEEEecCCCCc-
Confidence 578888764321 145778877776643222 223444433222 23444444432 3689999998754332
Q ss_pred hHHHHHHHHhhCCCeEEeCCCCccCCCCcchhhh-ccchhhhhcccC-CCCCCEEEEEeCCCCC
Q 017886 296 TSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKL-MHGELVEKENWL-PKGQITIGITSGASTP 357 (364)
Q Consensus 296 T~rL~eia~~~~~~t~~Ie~~~eL~~~~~~~~~~-~~~~~~~~~~wl-~~~~~~VGITAGASTP 357 (364)
..++.+++.+.|...+.+..+-.....+.... ..|.. .-++| ..|.++||+.+|....
T Consensus 80 --~~~~~l~~~~iPvV~i~~~~~~~~~~~V~~D~~~~g~~--a~~~L~~~G~~~I~~i~~~~~~ 139 (288)
T 3gv0_A 80 --PRVRFMTERNMPFVTHGRSDMGIEHAFHDFDNEAYAYE--AVERLAQCGRKRIAVIVPPSRF 139 (288)
T ss_dssp --HHHHHHHHTTCCEEEESCCCSSCCCEEEEECHHHHHHH--HHHHHHHTTCCEEEEECCCTTS
T ss_pred --HHHHHHhhCCCCEEEECCcCCCCCCcEEEeCcHHHHHH--HHHHHHHCCCCeEEEEcCCccc
Confidence 45566677899999998754322211111110 11111 11222 2478999999887543
No 31
>3td9_A Branched chain amino acid ABC transporter, peripl amino acid-binding protein; leucine binding, structural genomics; HET: MSE PHE; 1.90A {Thermotoga maritima}
Probab=61.24 E-value=34 Score=31.33 Aligned_cols=134 Identities=13% Similarity=0.146 Sum_probs=73.3
Q ss_pred ceEEEEEcCCCCh-HHHHHHHHHHHHHHhhhccc-ccccccccccccccHHHHHHHHHHHHhhhhC-CCEEEEEcCCCCc
Q 017886 218 VKVGIANQTTMLK-GETEEIGKLVEKTMMRKFGV-ENVNEHFISFNTICDATQERQDAMYKMVEEK-VDLILVVGGWNSS 294 (364)
Q Consensus 218 ~kv~vvsQTT~~~-~~~~~i~~~l~~~~~~~~~~-~~~~~~~~v~nTIC~AT~~RQ~a~~eLa~~~-vD~miVVGGknSS 294 (364)
.+|+++.-.|=.. ..-.++.+.++..+.+. .. ....-++.+.||-|.....+ +++++|..+. ||+ |||...|+
T Consensus 17 ~~iG~~~plsG~~a~~g~~~~~g~~~a~~~i-n~i~G~~i~l~~~D~~~~~~~~~-~~~~~l~~~~~v~~--iiG~~~s~ 92 (366)
T 3td9_A 17 VKIAVILPMTGGISAFGRMVWEGIQIAHEEK-PTVLGEEVELVLLDTRSEKTEAA-NAAARAIDKEKVLA--IIGEVASA 92 (366)
T ss_dssp EEEEEEECCSSTTHHHHHHHHHHHHHHHHHC-CEETTEEEEEEEEECTTCHHHHH-HHHHHHHHTSCCSE--EEECSSHH
T ss_pred EEEEEEECCcCcchhcCHHHHHHHHHHHHHh-hhcCCeEEEEEEecCCCCHHHHH-HHHHHHhccCCeEE--EEccCCch
Confidence 5898776555443 33345555444322221 00 00113567888888776554 4555665332 554 56888899
Q ss_pred hhHHHHHHHHhhCCCeEEeCC-CCccCCCCcchhhh-ccc--hhhhhcccC-CC-CCCEEEEEeCCC
Q 017886 295 NTSHLQEIAEDRGIPSYWIDS-EKRIGPGNKIAYKL-MHG--ELVEKENWL-PK-GQITIGITSGAS 355 (364)
Q Consensus 295 NT~rL~eia~~~~~~t~~Ie~-~~eL~~~~~~~~~~-~~~--~~~~~~~wl-~~-~~~~VGITAGAS 355 (364)
.+..+.+++++.+.|.+.... ..++.......|.. ... +.....+|+ .. +.++|++-.+.+
T Consensus 93 ~~~~~~~~~~~~~iP~i~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~~g~~~iaii~~~~ 159 (366)
T 3td9_A 93 HSLAIAPIAEENKVPMVTPASTNPLVTQGRKFVSRVCFIDPFQGAAMAVFAYKNLGAKRVVVFTDVE 159 (366)
T ss_dssp HHHHHHHHHHHTTCCEEESSCCCGGGTTTCSSEEESSCCHHHHHHHHHHHHHHTSCCCEEEEEEETT
T ss_pred hHHHHHHHHHhCCCeEEecCCCCccccCCCCCEEEEeCCcHHHHHHHHHHHHHhcCCcEEEEEEeCC
Confidence 999999999999999887754 33332211122221 000 111112333 12 778999986533
No 32
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=61.18 E-value=66 Score=28.33 Aligned_cols=88 Identities=17% Similarity=0.237 Sum_probs=51.0
Q ss_pred eEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHH-HHHHHhhhhCCCEEEEEcCCCCchhH
Q 017886 219 KVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSNTS 297 (364)
Q Consensus 219 kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ-~a~~eLa~~~vD~miVVGGknSSNT~ 297 (364)
.|+++... ++-.-|.++.+-+.+...+. + -++.+.++ .....+| +.++.|...++|.+|+.+. .++...
T Consensus 3 ~Igvi~~~-~~~~f~~~~~~gi~~~~~~~-g-----~~~~~~~~--~~~~~~~~~~i~~l~~~~vdgiIi~~~-~~~~~~ 72 (283)
T 2ioy_A 3 TIGLVIST-LNNPFFVTLKNGAEEKAKEL-G-----YKIIVEDS--QNDSSKELSNVEDLIQQKVDVLLINPV-DSDAVV 72 (283)
T ss_dssp EEEEEESC-SSSHHHHHHHHHHHHHHHHH-T-----CEEEEEEC--TTCHHHHHHHHHHHHHTTCSEEEECCS-STTTTH
T ss_pred EEEEEecC-CCCHHHHHHHHHHHHHHHhc-C-----cEEEEecC--CCCHHHHHHHHHHHHHcCCCEEEEeCC-chhhhH
Confidence 57777654 44455777777776543322 2 12333322 1223444 3455555578999998764 333333
Q ss_pred HHHHHHHhhCCCeEEeCCC
Q 017886 298 HLQEIAEDRGIPSYWIDSE 316 (364)
Q Consensus 298 rL~eia~~~~~~t~~Ie~~ 316 (364)
.+++.+.+.+.|...+++.
T Consensus 73 ~~~~~~~~~~iPvV~~~~~ 91 (283)
T 2ioy_A 73 TAIKEANSKNIPVITIDRS 91 (283)
T ss_dssp HHHHHHHHTTCCEEEESSC
T ss_pred HHHHHHHHCCCeEEEecCC
Confidence 4556667788999999864
No 33
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=59.51 E-value=39 Score=30.25 Aligned_cols=128 Identities=17% Similarity=0.155 Sum_probs=69.3
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHH-HHHHHhhhhCCCEEEEEcCCCCchh
Q 017886 218 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSNT 296 (364)
Q Consensus 218 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ-~a~~eLa~~~vD~miVVGGknSSNT 296 (364)
..|+++.-. ++-.-|.++.+-+++...+. +-++.+.++ .....+| +.++.|.+..+|.+|+.+...+. .
T Consensus 3 ~~Igvi~~~-~~~~~~~~~~~gi~~~a~~~------g~~~~~~~~--~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~-~ 72 (313)
T 3m9w_A 3 VKIGMAIDD-LRLERWQKDRDIFVKKAESL------GAKVFVQSA--NGNEETQMSQIENMINRGVDVLVIIPYNGQV-L 72 (313)
T ss_dssp CEEEEEESC-CSSSTTHHHHHHHHHHHHHT------SCEEEEEEC--TTCHHHHHHHHHHHHHTTCSEEEEECSSTTS-C
T ss_pred cEEEEEeCC-CCChHHHHHHHHHHHHHHHc------CCEEEEECC--CCCHHHHHHHHHHHHHcCCCEEEEeCCChhh-h
Confidence 368887654 33344666666666543322 223444443 3333444 44555555789999998865443 3
Q ss_pred HHHHHHHHhhCCCeEEeCCCCccCCC-Ccchhhh-ccchhhhhcccCC--CCCCEEEEEeCCCCC
Q 017886 297 SHLQEIAEDRGIPSYWIDSEKRIGPG-NKIAYKL-MHGELVEKENWLP--KGQITIGITSGASTP 357 (364)
Q Consensus 297 ~rL~eia~~~~~~t~~Ie~~~eL~~~-~~~~~~~-~~~~~~~~~~wl~--~~~~~VGITAGASTP 357 (364)
..+++.+++.+.|...+.+..+-..- ..+.... ..|.. .-++|- .|.++|++-.|.+.-
T Consensus 73 ~~~~~~~~~~~iPvV~~~~~~~~~~~~~~V~~D~~~~g~~--a~~~L~~~~G~~~i~~i~g~~~~ 135 (313)
T 3m9w_A 73 SNVVKEAKQEGIKVLAYDRMINDADIDFYISFDNEKVGEL--QAKALVDIVPQGNYFLMGGSPVD 135 (313)
T ss_dssp HHHHHHHHTTTCEEEEESSCCTTSCCSEEEEECHHHHHHH--HHHHHHHHCSSEEEEEEESCTTC
T ss_pred HHHHHHHHHCCCeEEEECCcCCCCCceEEEecCHHHHHHH--HHHHHHHhCCCCcEEEEECCCCC
Confidence 45666677889999999875432221 0111110 12222 112221 378899999886543
No 34
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=59.42 E-value=69 Score=27.97 Aligned_cols=126 Identities=13% Similarity=0.104 Sum_probs=65.3
Q ss_pred ceEEEEEcCC-CChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHH-HHHHHhhhhCCCEEEEEcCCCCch
Q 017886 218 VKVGIANQTT-MLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSN 295 (364)
Q Consensus 218 ~kv~vvsQTT-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ-~a~~eLa~~~vD~miVVGGknSSN 295 (364)
.+|+++...+ ++-.-|.++.+-+.+...+. +-++.++++ .....+| +.++.|.+..+|.+|+.+...+.
T Consensus 20 ~~Ig~i~~~~~~~~~~~~~~~~gi~~~~~~~------g~~~~~~~~--~~~~~~~~~~~~~l~~~~vdgii~~~~~~~~- 90 (296)
T 3brq_A 20 QTLGLVVTNTLYHGIYFSELLFHAARMAEEK------GRQLLLADG--KHSAEEERQAIQYLLDLRCDAIMIYPRFLSV- 90 (296)
T ss_dssp CEEEEEECGGGCC--CHHHHHHHHHHHHHHT------TCEEEEECC--TTSHHHHHHHHHHHHHTTCSEEEEECSSSCH-
T ss_pred ceEEEEeCCcccCCchHHHHHHHHHHHHHHC------CCEEEEEeC--CCCHHHHHHHHHHHHhcCCCEEEEecCCCCh-
Confidence 5799987653 44455677777776543322 123433332 2233444 34555555689999998764332
Q ss_pred hHHHHHHHHh-hCCCeEEeCCCCccCCCCcchhhh-ccchhhhhcccC-CCCCCEEEEEeCCCC
Q 017886 296 TSHLQEIAED-RGIPSYWIDSEKRIGPGNKIAYKL-MHGELVEKENWL-PKGQITIGITSGAST 356 (364)
Q Consensus 296 T~rL~eia~~-~~~~t~~Ie~~~eL~~~~~~~~~~-~~~~~~~~~~wl-~~~~~~VGITAGAST 356 (364)
..++.+.+ .+.|...+.+..+=..-..+.... ..|.. .-+|| ..|.++||+-.|...
T Consensus 91 --~~~~~l~~~~~iPvV~~~~~~~~~~~~~V~~d~~~~~~~--a~~~l~~~G~~~I~~i~~~~~ 150 (296)
T 3brq_A 91 --DEIDDIIDAHSQPIMVLNRRLRKNSSHSVWCDHKQTSFN--AVAELINAGHQEIAFLTGSMD 150 (296)
T ss_dssp --HHHHHHHHTCSSCEEEESCCCSSSGGGEECCCHHHHHHH--HHHHHHHTTCCSEEEECCCTT
T ss_pred --HHHHHHHhcCCCCEEEEccccCCCCCCEEEEchHHHHHH--HHHHHHHCCCceEEEEcCCCC
Confidence 33344556 789998887643211100011000 11111 11333 137889999988643
No 35
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=58.62 E-value=68 Score=28.03 Aligned_cols=128 Identities=13% Similarity=0.097 Sum_probs=70.7
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHHH-HHHHhhhhCCCEEEEEcCCCCc--
Q 017886 218 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQD-AMYKMVEEKVDLILVVGGWNSS-- 294 (364)
Q Consensus 218 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ~-a~~eLa~~~vD~miVVGGknSS-- 294 (364)
..|+++.... +-.-|.++.+-+++...+. + -++.++++ ....++|. .+..|.+..+|.+|+.+...+.
T Consensus 16 ~~Igvi~~~~-~~~~~~~~~~gi~~~a~~~-g-----~~~~~~~~--~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~ 86 (298)
T 3tb6_A 16 KTIGVLTTYI-SDYIFPSIIRGIESYLSEQ-G-----YSMLLTST--NNNPDNERRGLENLLSQHIDGLIVEPTKSALQT 86 (298)
T ss_dssp CEEEEEESCS-SSTTHHHHHHHHHHHHHHT-T-----CEEEEEEC--TTCHHHHHHHHHHHHHTCCSEEEECCSSTTSCC
T ss_pred ceEEEEeCCC-CchHHHHHHHHHHHHHHHC-C-----CEEEEEeC--CCChHHHHHHHHHHHHCCCCEEEEecccccccC
Confidence 5788887653 4445777777777643332 2 23444332 23345553 3444545789999998865441
Q ss_pred hhHHHHHHHHhhCCCeEEeCCCCccCCCCcchhhh-ccchhhhhcccC-CCCCCEEEEEeCCCC
Q 017886 295 NTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKL-MHGELVEKENWL-PKGQITIGITSGAST 356 (364)
Q Consensus 295 NT~rL~eia~~~~~~t~~Ie~~~eL~~~~~~~~~~-~~~~~~~~~~wl-~~~~~~VGITAGAST 356 (364)
....+++-+++.+.|...+.+..+-..-..+.... ..|.. --++| ..|.++||+-.|...
T Consensus 87 ~~~~~~~~~~~~~iPvV~~~~~~~~~~~~~V~~d~~~~~~~--a~~~L~~~G~~~i~~i~~~~~ 148 (298)
T 3tb6_A 87 PNIGYYLNLEKNGIPFAMINASYAELAAPSFTLDDVKGGMM--AAEHLLSLGHTHMMGIFKADD 148 (298)
T ss_dssp TTHHHHHHHHHTTCCEEEESSCCTTCSSCEEEECHHHHHHH--HHHHHHHTTCCSEEEEEESSS
T ss_pred CcHHHHHHHHhcCCCEEEEecCcCCCCCCEEEeCcHHHHHH--HHHHHHHCCCCcEEEEcCCCC
Confidence 34456666778899999998753322101111110 11111 11222 147889998887654
No 36
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=58.17 E-value=69 Score=28.00 Aligned_cols=90 Identities=10% Similarity=0.159 Sum_probs=52.2
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHH-HHHHHhhhhCCCEEEEEcCCCCchh
Q 017886 218 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSNT 296 (364)
Q Consensus 218 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ-~a~~eLa~~~vD~miVVGGknSSNT 296 (364)
+.|+++... ++-.-|.++++-+.+...+. + -++.+.++ .....+| +.++.|.+.++|.+|+.+.. +...
T Consensus 2 ~~Igvi~~~-~~~~f~~~~~~gi~~~~~~~-g-----~~~~~~~~--~~~~~~~~~~i~~l~~~~vdgiIi~~~~-~~~~ 71 (271)
T 2dri_A 2 DTIALVVST-LNNPFFVSLKDGAQKEADKL-G-----YNLVVLDS--QNNPAKELANVQDLTVRGTKILLINPTD-SDAV 71 (271)
T ss_dssp CEEEEEESC-SSSHHHHHHHHHHHHHHHHH-T-----CEEEEEEC--TTCHHHHHHHHHHHTTTTEEEEEECCSS-TTTT
T ss_pred cEEEEEecC-CCCHHHHHHHHHHHHHHHHc-C-----cEEEEeCC--CCCHHHHHHHHHHHHHcCCCEEEEeCCC-hHHH
Confidence 367887754 44456777877776643332 1 12333322 1222334 34555555689999986543 3333
Q ss_pred HHHHHHHHhhCCCeEEeCCCC
Q 017886 297 SHLQEIAEDRGIPSYWIDSEK 317 (364)
Q Consensus 297 ~rL~eia~~~~~~t~~Ie~~~ 317 (364)
..+.+.+++.+.|...+++..
T Consensus 72 ~~~~~~~~~~~iPvV~i~~~~ 92 (271)
T 2dri_A 72 GNAVKMANQANIPVITLDRQA 92 (271)
T ss_dssp HHHHHHHHHTTCCEEEESSCC
T ss_pred HHHHHHHHHCCCcEEEecCCC
Confidence 445566667889999998753
No 37
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=57.81 E-value=81 Score=28.97 Aligned_cols=124 Identities=11% Similarity=0.074 Sum_probs=67.6
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHH-HHHHHhhhhCCCEEEEEcCCCCchh
Q 017886 218 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSNT 296 (364)
Q Consensus 218 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ-~a~~eLa~~~vD~miVVGGknSSNT 296 (364)
..|+++.-. ++-.-|.++++-+.+...+. +-++.++++- ...++| +.+..|....+|.+|+.+...+
T Consensus 71 ~~Igvi~~~-~~~~~~~~~~~gi~~~a~~~------g~~~~~~~~~--~~~~~~~~~~~~l~~~~vdGiI~~~~~~~--- 138 (355)
T 3e3m_A 71 GFVGLLLPS-LNNLHFAQTAQSLTDVLEQG------GLQLLLGYTA--YSPEREEQLVETMLRRRPEAMVLSYDGHT--- 138 (355)
T ss_dssp CEEEEEESC-SBCHHHHHHHHHHHHHHHHT------TCEEEEEECT--TCHHHHHHHHHHHHHTCCSEEEEECSCCC---
T ss_pred CEEEEEeCC-CCchHHHHHHHHHHHHHHHC------CCEEEEEeCC--CChHHHHHHHHHHHhCCCCEEEEeCCCCC---
Confidence 478888754 44456777877776643332 2233333322 233444 3344454578999999986554
Q ss_pred HHHHHHHHhhCCCeEEeCCCCccCCCCcchhhh-ccchhhhhcccC-CCCCCEEEEEeCCC
Q 017886 297 SHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKL-MHGELVEKENWL-PKGQITIGITSGAS 355 (364)
Q Consensus 297 ~rL~eia~~~~~~t~~Ie~~~eL~~~~~~~~~~-~~~~~~~~~~wl-~~~~~~VGITAGAS 355 (364)
..+.+.+.+.+.|...|.+..+-+....+.... ..|.. .-++| ..|.++||+..|..
T Consensus 139 ~~~~~~l~~~~iPvV~i~~~~~~~~~~~V~~D~~~~~~~--a~~~L~~~G~r~I~~i~~~~ 197 (355)
T 3e3m_A 139 EQTIRLLQRASIPIVEIWEKPAHPIGHTVGFSNERAAYD--MTNALLARGFRKIVFLGEKD 197 (355)
T ss_dssp HHHHHHHHHCCSCEEEESSCCSSCSSEEEECCHHHHHHH--HHHHHHHTTCCSEEEEEESS
T ss_pred HHHHHHHHhCCCCEEEECCccCCCCCCEEEeChHHHHHH--HHHHHHHCCCCeEEEEccCc
Confidence 355666778899999996543222111111110 11111 11222 24889999998854
No 38
>3trj_A Phosphoheptose isomerase; lipopolysaccharide biosynthesis; 2.80A {Francisella tularensis subsp}
Probab=57.80 E-value=52 Score=28.70 Aligned_cols=23 Identities=17% Similarity=0.354 Sum_probs=17.7
Q ss_pred ccCCCEE-EEcCCCCCHHHHHHHH
Q 017886 94 VNKGDVV-VLPAFGAAVEEMVTLN 116 (364)
Q Consensus 94 l~~g~~V-IIrAHGv~~~v~~~l~ 116 (364)
+.++|.| +|+.-|-++++.+.++
T Consensus 112 ~~~~Dvvi~iS~SG~t~~~~~~~~ 135 (201)
T 3trj_A 112 GNEDDILLVITTSGDSENILSAVE 135 (201)
T ss_dssp CCTTCEEEEECSSSCCHHHHHHHH
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHH
Confidence 4568875 5888999999887664
No 39
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=57.53 E-value=89 Score=27.69 Aligned_cols=132 Identities=8% Similarity=-0.120 Sum_probs=72.0
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHH-HHHHHhhhhCCCEEEEEcCCCCchh
Q 017886 218 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSNT 296 (364)
Q Consensus 218 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ-~a~~eLa~~~vD~miVVGGknSSNT 296 (364)
.+|+++.... +-.-|..+.+-+++...+. + -++.+.++-=....++| +.+..|....+|.+|+.+. .+...
T Consensus 4 ~~Igvi~~~~-~~~~~~~~~~gi~~~a~~~-g-----~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~-~~~~~ 75 (297)
T 3rot_A 4 DKYYLITHGS-QDPYWTSLFQGAKKAAEEL-K-----VDLQILAPPGANDVPKQVQFIESALATYPSGIATTIP-SDTAF 75 (297)
T ss_dssp CEEEEECSCC-CSHHHHHHHHHHHHHHHHH-T-----CEEEEECCSSSCCHHHHHHHHHHHHHTCCSEEEECCC-CSSTT
T ss_pred EEEEEEecCC-CCchHHHHHHHHHHHHHHh-C-----cEEEEECCCCcCCHHHHHHHHHHHHHcCCCEEEEeCC-CHHHH
Confidence 3788887766 4456777877776643332 2 23444432200123344 4455555578999887654 44444
Q ss_pred HHHHHHHHhhCCCeEEeCCCCcc----CCCCcchhhh-ccchhhhhcccCC-CC--CCEEEEEeCCCCCHH
Q 017886 297 SHLQEIAEDRGIPSYWIDSEKRI----GPGNKIAYKL-MHGELVEKENWLP-KG--QITIGITSGASTPDK 359 (364)
Q Consensus 297 ~rL~eia~~~~~~t~~Ie~~~eL----~~~~~~~~~~-~~~~~~~~~~wl~-~~--~~~VGITAGASTP~~ 359 (364)
..+++.+++.|.|...+.+..+- .....+.... ..|.. .-+||- .+ .++|++..|.+.-.+
T Consensus 76 ~~~~~~~~~~giPvV~~~~~~~~~~~~~~~~~V~~D~~~~g~~--a~~~l~~~g~~~~~i~~i~g~~~~~~ 144 (297)
T 3rot_A 76 SKSLQRANKLNIPVIAVDTRPKDKTKNPYLVFLGSDNLLAGKK--LGEKALELTPSAKRALVLNPQPGHIG 144 (297)
T ss_dssp HHHHHHHHHHTCCEEEESCCCSCTTTSCCSCEEECCHHHHHHH--HHHHHHHHCTTCCEEEEEESCTTCHH
T ss_pred HHHHHHHHHCCCCEEEEcCCCccccccCcceEEccChHHHHHH--HHHHHHHhcCCCceEEEEeCCCCcHH
Confidence 66677777889999999876543 1111111110 11221 112221 24 889999988765433
No 40
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=56.98 E-value=57 Score=28.72 Aligned_cols=125 Identities=18% Similarity=0.173 Sum_probs=69.5
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHHH-HHHHhhhhCCCEEEEEcCCCCchh
Q 017886 218 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQD-AMYKMVEEKVDLILVVGGWNSSNT 296 (364)
Q Consensus 218 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ~-a~~eLa~~~vD~miVVGGknSSNT 296 (364)
..|+++.-. ++-.-|.++.+-+++...+. +-++.++++- ....+|. .++.|.+..+|.+|+.+... .
T Consensus 9 ~~Igvv~~~-~~~~~~~~~~~gi~~~a~~~------g~~~~~~~~~--~~~~~~~~~~~~l~~~~vdgiIi~~~~~---~ 76 (291)
T 3egc_A 9 NVVGLIVSD-IENVFFAEVASGVESEARHK------GYSVLLANTA--EDIVREREAVGQFFERRVDGLILAPSEG---E 76 (291)
T ss_dssp CEEEEEESC-TTSHHHHHHHHHHHHHHHHT------TCEEEEEECT--TCHHHHHHHHHHHHHTTCSEEEECCCSS---C
T ss_pred cEEEEEECC-CcchHHHHHHHHHHHHHHHC------CCEEEEEeCC--CCHHHHHHHHHHHHHCCCCEEEEeCCCC---C
Confidence 578988865 34455777777776643332 2234444332 2234443 34444456899999987654 3
Q ss_pred HHHHHHHHhhCCCeEEeCCCCccCCCCcchhhh-ccchhhhhcccC-CCCCCEEEEEeCCCC
Q 017886 297 SHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKL-MHGELVEKENWL-PKGQITIGITSGAST 356 (364)
Q Consensus 297 ~rL~eia~~~~~~t~~Ie~~~eL~~~~~~~~~~-~~~~~~~~~~wl-~~~~~~VGITAGAST 356 (364)
..+++.+.+.+.|...+.+..+-..-..+.... ..|.. .-++| ..|.++|++-.|.+.
T Consensus 77 ~~~~~~~~~~~iPvV~~~~~~~~~~~~~V~~D~~~~g~~--a~~~L~~~G~~~i~~i~~~~~ 136 (291)
T 3egc_A 77 HDYLRTELPKTFPIVAVNRELRIPGCGAVLSENVRGART--AVEYLIARGHTRIGAIVGSAG 136 (291)
T ss_dssp CHHHHHSSCTTSCEEEESSCCCCTTCEEEEECHHHHHHH--HHHHHHHTTCCSEEEECSCTT
T ss_pred hHHHHHhhccCCCEEEEecccCCCCCCEEEECcHHHHHH--HHHHHHHcCCCEEEEEeCCCC
Confidence 345666677899999998765422211111110 11111 11222 247899999988753
No 41
>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}
Probab=56.75 E-value=24 Score=33.10 Aligned_cols=63 Identities=10% Similarity=0.013 Sum_probs=40.5
Q ss_pred ceEEecccccCHHHHHHHHHcCcEEecCCcccccccccc-CCCEEEEcCCCCCHH--HHHHHHhcCCcEEe
Q 017886 57 KIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVN-KGDVVVLPAFGAAVE--EMVTLNNKNVQIVD 124 (364)
Q Consensus 57 ~vy~lG~iIHN~~Vv~~L~~~Gv~~v~~~~~~~~~~~l~-~g~~VIIrAHGv~~~--v~~~l~~~g~~iiD 124 (364)
.|+.. +.--++...+.|++.|+.+.... +.+.+. .+.-+||.+=|+|++ .+++++++|+.|+-
T Consensus 30 ~V~~~-D~~~~~~~~~~L~~~gi~v~~g~----~~~~l~~~~~d~vV~Spgi~~~~p~~~~a~~~gi~v~~ 95 (326)
T 3eag_A 30 EVSGC-DAKMYPPMSTQLEALGIDVYEGF----DAAQLDEFKADVYVIGNVAKRGMDVVEAILNLGLPYIS 95 (326)
T ss_dssp EEEEE-ESSCCTTHHHHHHHTTCEEEESC----CGGGGGSCCCSEEEECTTCCTTCHHHHHHHHTTCCEEE
T ss_pred EEEEE-cCCCCcHHHHHHHhCCCEEECCC----CHHHcCCCCCCEEEECCCcCCCCHHHHHHHHcCCcEEe
Confidence 44443 33333556789999999987532 123443 232366667799874 67889999999873
No 42
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=56.39 E-value=1e+02 Score=26.90 Aligned_cols=126 Identities=16% Similarity=0.124 Sum_probs=69.8
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHH-HHHHHhhhhCCCEEEEEcCCCCchh
Q 017886 218 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSNT 296 (364)
Q Consensus 218 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ-~a~~eLa~~~vD~miVVGGknSSNT 296 (364)
.+|+++.-.. +-.-|.++.+-+.+...+. +-++.++++ .....+| +.++.|....+|.+|+.+.. ++..
T Consensus 6 ~~Ig~i~~~~-~~~~~~~~~~gi~~~a~~~------g~~~~~~~~--~~~~~~~~~~~~~l~~~~vdgiIi~~~~-~~~~ 75 (291)
T 3l49_A 6 KTIGITAIGT-DHDWDLKAYQAQIAEIERL------GGTAIALDA--GRNDQTQVSQIQTLIAQKPDAIIEQLGN-LDVL 75 (291)
T ss_dssp CEEEEEESCC-SSHHHHHHHHHHHHHHHHT------TCEEEEEEC--TTCHHHHHHHHHHHHHHCCSEEEEESSC-HHHH
T ss_pred cEEEEEeCCC-CChHHHHHHHHHHHHHHHc------CCEEEEEcC--CCCHHHHHHHHHHHHHcCCCEEEEeCCC-hhhh
Confidence 5789887654 3455667777776643322 223444433 2233444 34455555789999988653 3445
Q ss_pred HHHHHHHHhhCCCeEEeCCCCccCCCCcchhhh-ccchh-h-hhcccCCCCCCEEEEEeCCC
Q 017886 297 SHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKL-MHGEL-V-EKENWLPKGQITIGITSGAS 355 (364)
Q Consensus 297 ~rL~eia~~~~~~t~~Ie~~~eL~~~~~~~~~~-~~~~~-~-~~~~wl~~~~~~VGITAGAS 355 (364)
..+++.+.+.+.|...+++..+-.. ..+.... ..|.. . --.+++ .|.++|++..|..
T Consensus 76 ~~~~~~~~~~~iPvV~~~~~~~~~~-~~V~~D~~~~g~~~~~~l~~~~-~g~~~i~~i~~~~ 135 (291)
T 3l49_A 76 NPWLQKINDAGIPLFTVDTATPHAI-NNTTSNNYSIGAELALQMVADL-GGKGNVLVFNGFY 135 (291)
T ss_dssp HHHHHHHHHTTCCEEEESCCCTTCS-EEEEECHHHHHHHHHHHHHHHH-TTCEEEEEECSCT
T ss_pred HHHHHHHHHCCCcEEEecCCCCCcC-ceEecChHHHHHHHHHHHHHHc-CCCceEEEEeCCC
Confidence 5667777788999999987543110 0111100 11211 1 111122 4789999998754
No 43
>1usg_A Leucine-specific binding protein; leucine-binding protein, X-RAY crystallography, protein structure, ABC transport systems, transport protein; 1.53A {Escherichia coli} SCOP: c.93.1.1 PDB: 1usi_A* 1usk_A 2lbp_A 1z15_A 1z16_A 1z17_A 1z18_A 2liv_A
Probab=56.01 E-value=63 Score=28.98 Aligned_cols=94 Identities=18% Similarity=0.173 Sum_probs=54.9
Q ss_pred eEEEEEcCCCC-hHHHHHHHHHHHHHHhhh--ccc-ccccccccccccccHHHHHHHHHHHHhhhhCCCEEEEEcCCCCc
Q 017886 219 KVGIANQTTML-KGETEEIGKLVEKTMMRK--FGV-ENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSS 294 (364)
Q Consensus 219 kv~vvsQTT~~-~~~~~~i~~~l~~~~~~~--~~~-~~~~~~~~v~nTIC~AT~~RQ~a~~eLa~~~vD~miVVGGknSS 294 (364)
+|+++.-.|-. ..-+..+...++..+.+. .+. ....-++.+.||-|.....+ +.+++|...++|++ ||...|+
T Consensus 4 ~IG~~~p~~g~~~~~~~~~~~g~~~a~~~iN~~ggi~G~~l~l~~~d~~~~~~~~~-~~~~~l~~~~v~~i--ig~~~s~ 80 (346)
T 1usg_A 4 KVAVVGAMSGPIAQWGDMEFNGARQAIKDINAKGGIKGDKLVGVEYDDACDPKQAV-AVANKIVNDGIKYV--IGHLCSS 80 (346)
T ss_dssp EEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHTTTBTTBCEEEEEEECTTCHHHHH-HHHHHHHHTTCCEE--ECCSSHH
T ss_pred EEEEEeCCCCcchhcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEeCCCCCHHHHH-HHHHHHHhCCCCEE--EcCCCcH
Confidence 67777654432 223344544444332220 000 00111456778877765554 44555654678875 5777788
Q ss_pred hhHHHHHHHHhhCCCeEEeCC
Q 017886 295 NTSHLQEIAEDRGIPSYWIDS 315 (364)
Q Consensus 295 NT~rL~eia~~~~~~t~~Ie~ 315 (364)
++..+.+++++.+.|.+.+.+
T Consensus 81 ~~~~~~~~~~~~~ip~v~~~~ 101 (346)
T 1usg_A 81 STQPASDIYEDEGILMISPGA 101 (346)
T ss_dssp HHHHHHHHHHHHTCEEEECCC
T ss_pred HHHHHHHHHHHCCCeEEeeCC
Confidence 888899999999998877754
No 44
>3p9z_A Uroporphyrinogen III cosynthase (HEMD); MCSG, PSI2, structural genomics, protein structure initiativ midwest center for structural genomics; HET: MSE; 2.10A {Helicobacter pylori}
Probab=55.91 E-value=21 Score=31.82 Aligned_cols=64 Identities=17% Similarity=0.174 Sum_probs=42.8
Q ss_pred CCceEEecccccCHHHHHHHHHcCcEEecCCcc--cccc-c----cccCCCEEEEcCCCCCHHHHHHHHhcCCcEE
Q 017886 55 EEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEG--KKQF-D----VVNKGDVVVLPAFGAAVEEMVTLNNKNVQIV 123 (364)
Q Consensus 55 ~~~vy~lG~iIHN~~Vv~~L~~~Gv~~v~~~~~--~~~~-~----~l~~g~~VIIrAHGv~~~v~~~l~~~g~~ii 123 (364)
+.++|+.|+ ..-+.|++.|+...--++. .+.| + .++...++++|+-+-.+...+.|+++|..+.
T Consensus 67 ~~~i~aVG~-----~Ta~aL~~~G~~~~~~p~~~~~e~L~~~l~~~~~~~~vL~~rg~~~~~~L~~~L~~~G~~v~ 137 (229)
T 3p9z_A 67 NIPAYALSE-----PTAKTLQDHHFKVAFMGEKAHGKEFVQEIFPLLEKKSVLYLRAKEIVSSLDTILLEHGIDFK 137 (229)
T ss_dssp TSCEEESSH-----HHHHHHHHTTCCBCCCCC---------CCHHHHTTCEEEEEEESSCSSCHHHHHHHTTCEEE
T ss_pred CCcEEEECH-----HHHHHHHHcCCCeeecCCcccHHHHHHHHHhhCCCCEEEEECCccchHHHHHHHHHCCCeEE
Confidence 357999995 5668999999975422211 1111 1 1232345789999889999999999998873
No 45
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=55.75 E-value=1.1e+02 Score=26.87 Aligned_cols=89 Identities=12% Similarity=0.107 Sum_probs=52.1
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHH-HHHHHhhhhCCCEEEEEcCCCCchh
Q 017886 218 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSNT 296 (364)
Q Consensus 218 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ-~a~~eLa~~~vD~miVVGGknSSNT 296 (364)
.+|+++.... +-.-|.++.+-+.+...+. +-++.++++- ....+| +.++.|.+..+|.+|+.+... +..
T Consensus 3 ~~Ig~i~~~~-~~~~~~~~~~gi~~~~~~~------g~~~~~~~~~--~~~~~~~~~~~~l~~~~vdgiI~~~~~~-~~~ 72 (290)
T 2fn9_A 3 GKMAIVISTL-NNPWFVVLAETAKQRAEQL------GYEATIFDSQ--NDTAKESAHFDAIIAAGYDAIIFNPTDA-DGS 72 (290)
T ss_dssp CEEEEEESCS-SSHHHHHHHHHHHHHHHHT------TCEEEEEECT--TCHHHHHHHHHHHHHTTCSEEEECCSCT-TTT
T ss_pred eEEEEEeCCC-CChHHHHHHHHHHHHHHHc------CCEEEEeCCC--CCHHHHHHHHHHHHHcCCCEEEEecCCh-HHH
Confidence 3688887543 3455677777776543322 2234444332 223344 345555556899999887543 333
Q ss_pred HHHHHHHHhhCCCeEEeCCC
Q 017886 297 SHLQEIAEDRGIPSYWIDSE 316 (364)
Q Consensus 297 ~rL~eia~~~~~~t~~Ie~~ 316 (364)
..+++.+.+.+.|...+.+.
T Consensus 73 ~~~~~~~~~~~iPvV~~~~~ 92 (290)
T 2fn9_A 73 IANVKRAKEAGIPVFCVDRG 92 (290)
T ss_dssp HHHHHHHHHTTCCEEEESSC
T ss_pred HHHHHHHHHCCCeEEEEecC
Confidence 34555666788999988864
No 46
>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structura genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp}
Probab=55.22 E-value=46 Score=29.39 Aligned_cols=89 Identities=16% Similarity=0.065 Sum_probs=52.1
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccc-cccccHHHHHHH-HHHHHhhhhCCCEEEEEcCCCCch
Q 017886 218 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFIS-FNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSN 295 (364)
Q Consensus 218 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~v-~nTIC~AT~~RQ-~a~~eLa~~~vD~miVVGGknSSN 295 (364)
.+|+++...+ .-.-|..+.+-++....+. + -++.+ .++ .....+| +.++.|....+|.+|+.+. .++.
T Consensus 5 ~~Ig~i~~~~-~~~~~~~~~~g~~~~~~~~-g-----~~~~~~~~~--~~~~~~~~~~~~~l~~~~vdgiii~~~-~~~~ 74 (303)
T 3d02_A 5 KTVVNISKVD-GMPWFNRMGEGVVQAGKEF-N-----LNASQVGPS--STDAPQQVKIIEDLIARKVDAITIVPN-DANV 74 (303)
T ss_dssp EEEEEECSCS-SCHHHHHHHHHHHHHHHHT-T-----EEEEEECCS--SSCHHHHHHHHHHHHHTTCSEEEECCS-CHHH
T ss_pred eEEEEEeccC-CChHHHHHHHHHHHHHHHc-C-----CEEEEECCC--CCCHHHHHHHHHHHHHcCCCEEEEecC-ChHH
Confidence 4788887553 3355677777776543322 2 22322 112 2233444 3455555568999988775 3333
Q ss_pred hHHHHHHHHhhCCCeEEeCCC
Q 017886 296 TSHLQEIAEDRGIPSYWIDSE 316 (364)
Q Consensus 296 T~rL~eia~~~~~~t~~Ie~~ 316 (364)
...+++.+.+.+.|...+.+.
T Consensus 75 ~~~~~~~~~~~~ipvV~~~~~ 95 (303)
T 3d02_A 75 LEPVFKKARDAGIVVLTNESP 95 (303)
T ss_dssp HHHHHHHHHHTTCEEEEESCT
T ss_pred HHHHHHHHHHCCCeEEEEecC
Confidence 345566677788999989875
No 47
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=54.99 E-value=68 Score=28.32 Aligned_cols=126 Identities=10% Similarity=0.104 Sum_probs=66.3
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHH-HHHHHhhhhCCCEEEEEcCCCCchh
Q 017886 218 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSNT 296 (364)
Q Consensus 218 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ-~a~~eLa~~~vD~miVVGGknSSNT 296 (364)
..|+++... ++-.-|..+.+-+.+...+. + -++.++++ .....+| +.++.|....+|.+|+.+...+.
T Consensus 21 ~~Ig~i~~~-~~~~~~~~~~~gi~~~~~~~-g-----~~~~~~~~--~~~~~~~~~~~~~l~~~~vdgii~~~~~~~~-- 89 (293)
T 2iks_A 21 RSIGLVIPD-LENTSYTRIANYLERQARQR-G-----YQLLIACS--EDQPDNEMRCIEHLLQRQVDAIIVSTSLPPE-- 89 (293)
T ss_dssp CEEEEEESC-SCSHHHHHHHHHHHHHHHHT-T-----CEEEEEEC--TTCHHHHHHHHHHHHHTTCSEEEECCSSCTT--
T ss_pred cEEEEEeCC-CcCcHHHHHHHHHHHHHHHC-C-----CEEEEEcC--CCCHHHHHHHHHHHHHcCCCEEEEeCCCCCc--
Confidence 579998764 44456777777776643322 1 22333332 1223344 34555555689999998764332
Q ss_pred HHHHHHHHhhCCCeEEeCCCCccCCCCcchhhh-ccchhhhhcccC-CCCCCEEEEEeCCCC
Q 017886 297 SHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKL-MHGELVEKENWL-PKGQITIGITSGAST 356 (364)
Q Consensus 297 ~rL~eia~~~~~~t~~Ie~~~eL~~~~~~~~~~-~~~~~~~~~~wl-~~~~~~VGITAGAST 356 (364)
..+++.+++.+.|...+.+..+-+.-..+.... ..|.. .-+|| ..|.++||+-.|...
T Consensus 90 ~~~~~~~~~~~iPvV~~~~~~~~~~~~~V~~d~~~~~~~--a~~~L~~~G~~~I~~i~~~~~ 149 (293)
T 2iks_A 90 HPFYQRWANDPFPIVALDRALDREHFTSVVGADQDDAEM--LAEELRKFPAETVLYLGALPE 149 (293)
T ss_dssp CHHHHTTTTSSSCEEEEESCCCTTTCEEEEECHHHHHHH--HHHHHHTSCCSSEEEEEECTT
T ss_pred HHHHHHHHhCCCCEEEECCccCcCCCCEEEecCHHHHHH--HHHHHHHCCCCEEEEEecCcc
Confidence 234455556788998887643211100111110 11111 11333 237889999988643
No 48
>2yva_A DNAA initiator-associating protein DIAA; intermolecular disulfide bonding, putative phosphosugar BIND protein, DNAA binding protein; 1.85A {Escherichia coli}
Probab=54.46 E-value=49 Score=28.03 Aligned_cols=22 Identities=18% Similarity=0.341 Sum_probs=16.8
Q ss_pred ccCCCEE-EEcCCCCCHHHHHHH
Q 017886 94 VNKGDVV-VLPAFGAAVEEMVTL 115 (364)
Q Consensus 94 l~~g~~V-IIrAHGv~~~v~~~l 115 (364)
+.++|.| +|+.-|-++++.+.+
T Consensus 107 ~~~~DvvI~iS~SG~t~~~i~~~ 129 (196)
T 2yva_A 107 GHAGDVLLAISTRGNSRDIVKAV 129 (196)
T ss_dssp CCTTCEEEEECSSSCCHHHHHHH
T ss_pred CCCCCEEEEEeCCCCCHHHHHHH
Confidence 4568865 688899999987665
No 49
>3lop_A Substrate binding periplasmic protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.55A {Ralstonia solanacearum}
Probab=54.31 E-value=38 Score=31.04 Aligned_cols=96 Identities=7% Similarity=-0.017 Sum_probs=58.4
Q ss_pred eEEEEEc-CCCChHHHHHHHHHHHHHHhhhc--c-cccccccccccccccHHHHHHHHHHHHhhhhCCCEEEEEcCCCCc
Q 017886 219 KVGIANQ-TTMLKGETEEIGKLVEKTMMRKF--G-VENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSS 294 (364)
Q Consensus 219 kv~vvsQ-TT~~~~~~~~i~~~l~~~~~~~~--~-~~~~~~~~~v~nTIC~AT~~RQ~a~~eLa~~~vD~miVVGGknSS 294 (364)
+|+++.= |......+.++..-++..+.+.- + .....-++.+.|+-|...... +++++|.. +-.+..|||...|+
T Consensus 7 ~IG~~~p~sG~~~~~g~~~~~g~~~a~~~~N~~ggi~G~~i~l~~~D~~~~~~~~~-~~~~~l~~-~~~v~~iig~~~s~ 84 (364)
T 3lop_A 7 SVIQSLPLSGSQAVTGRALNAGARLYFDWLNLNGGINGETIRLVARDDEQKIEQTV-RNVRDMAR-VDNPVALLTVVGTA 84 (364)
T ss_dssp EEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHTTTBTTBCEEEEEEECTTCHHHHH-HHHHHHHH-HSCEEEEECCCCHH
T ss_pred EEEEEecCCCcchhccHHHHHHHHHHHHHHHhcCCcCCeEEEEEEeCCCCCHHHHH-HHHHHHHh-hcCcEEEEecCCCH
Confidence 7887664 43434444445444443222210 0 001123566788888776554 45566653 23456678999999
Q ss_pred hhHHHHH--HHHhhCCCeEEeCCC
Q 017886 295 NTSHLQE--IAEDRGIPSYWIDSE 316 (364)
Q Consensus 295 NT~rL~e--ia~~~~~~t~~Ie~~ 316 (364)
++..+.+ ++.+.+.|.+.....
T Consensus 85 ~~~~~~~~~~~~~~~iP~v~~~~~ 108 (364)
T 3lop_A 85 NVEALMREGVLAEARLPLVGPATG 108 (364)
T ss_dssp HHHHHHHTTHHHHHTCCEESCSCC
T ss_pred HHHhhCchhhHHhcCCcEEEcccC
Confidence 9999999 999999998766543
No 50
>3i45_A Twin-arginine translocation pathway signal protei; structural genomics; 1.36A {Rhodospirillum rubrum}
Probab=54.25 E-value=16 Score=34.01 Aligned_cols=57 Identities=16% Similarity=0.115 Sum_probs=42.9
Q ss_pred ccccccccccHHHHHHHHHHHHhhh-hCCCEEEEEcCCCCchhHHHHHHHHhhCCCeEEeC
Q 017886 255 EHFISFNTICDATQERQDAMYKMVE-EKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWID 314 (364)
Q Consensus 255 ~~~~v~nTIC~AT~~RQ~a~~eLa~-~~vD~miVVGGknSSNT~rL~eia~~~~~~t~~Ie 314 (364)
-++.+.|+-|......+ ++++|.. ..||+ |||...|+.+..+..+|.+.+.|.+...
T Consensus 47 i~l~~~D~~~~~~~~~~-~~~~li~~~~v~a--iiG~~~s~~~~a~~~~~~~~~ip~i~~~ 104 (387)
T 3i45_A 47 LEVISRDDGGDPGKAVT-AAQELLTRHGVHA--LAGTFLSHVGLAVSDFARQRKVLFMASE 104 (387)
T ss_dssp EEEEEEECTTCHHHHHH-HHHHHHHHHCCSE--EEECCSHHHHHHHHHHHHHHTCCEEECS
T ss_pred eEEEEecCCCCHHHHHH-HHHHHHHhcCCEE--EECCcchHHHHHHHHHHHHcCceEEecC
Confidence 35667888887766554 4455543 36776 7899999999999999999999977654
No 51
>4es6_A Uroporphyrinogen-III synthase; heme-biosynthesis, cytoplasmi; 2.22A {Pseudomonas aeruginosa}
Probab=53.51 E-value=22 Score=31.93 Aligned_cols=116 Identities=14% Similarity=0.111 Sum_probs=70.4
Q ss_pred cchHHHHHHHcCCccccc-ceEEEEe--------------CCCCCcccHHHHHHHHHHHHhh-C---CCCceEEeccccc
Q 017886 6 TSDIIKKLKENGFEYTWG-NVKVKLA--------------ESYGFCWGVERAVQIAYEARKQ-F---PEEKIWITNEIIH 66 (364)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~-~mkI~lA--------------~~~GFC~GV~RAi~~a~~~~~~-~---~~~~vy~lG~iIH 66 (364)
.+++.+.|++.|+....- .+++.-. ......|==.+|++...+.+.+ + ++.++|+.|+
T Consensus 18 ~~~l~~~L~~~G~~~~~~P~i~i~~~~~~~~l~~~l~~l~~~d~vifTS~~aV~~~~~~l~~~~~~~~~~~i~aVG~--- 94 (254)
T 4es6_A 18 CAALAASLGEAGVHSSSLPLLAIDPLEETPEQRTLMLDLDRYCAVVVVSKPAARLGLERLDRYWPQPPQQTWCSVGA--- 94 (254)
T ss_dssp HHHHHHHHHHTTCEEEECCSCEEEECCCCHHHHHHHHTGGGCSEEEECSHHHHHHHHHHHHHHCSSCCSCEEEESSH---
T ss_pred hHHHHHHHHHCCCcEEEeCCEEEeeCcChHHHHHHHHhccCCCEEEEECHHHHHHHHHHHHHhCCCcccCEEEEECH---
Confidence 467889999998655443 2444322 1223344345555555444432 1 1247999986
Q ss_pred CHHHHHHHHHcCcEEecCCccc------cccc-----cccCCCEEEEcCCCCCHHHHHHHHhcCCcEEecc
Q 017886 67 NPTVNKRLEEMAVQNIPVEEGK------KQFD-----VVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTT 126 (364)
Q Consensus 67 N~~Vv~~L~~~Gv~~v~~~~~~------~~~~-----~l~~g~~VIIrAHGv~~~v~~~l~~~g~~iiDaT 126 (364)
..-+.|++.|+.+.-.+++. +.+. ..+...++++|+-+-.+...+.|+++|..|....
T Consensus 95 --~Ta~~L~~~G~~~~~~~~~~~~e~L~~~l~~~~~~~~~~~~vL~~rg~~~r~~L~~~L~~~G~~v~~~~ 163 (254)
T 4es6_A 95 --ATAAILEAYGLDVTYPEQGDDSEALLALPAFQDSLRVHDPKVLIMRGEGGREFLAERLRGQGVQVDYLP 163 (254)
T ss_dssp --HHHHHHHHHTCCEECCSSCCSHHHHHTCHHHHHHTCSSSCEEEEEECSSCCCHHHHHHHHTTCEEEEEE
T ss_pred --HHHHHHHHcCCCcccCCCCCCHHHHHHhHhhcccccCCCCEEEEEcCCccHHHHHHHHHHCCCEEEEEe
Confidence 45588999999764322211 1121 2333445789999999999999999999885443
No 52
>2kkn_A Uncharacterized protein; protein phosphatase 2A homologue, structural genomics, PSI- 2, protein structure initiative; NMR {Thermotoga maritima}
Probab=53.48 E-value=47 Score=28.37 Aligned_cols=83 Identities=10% Similarity=0.001 Sum_probs=48.9
Q ss_pred CceEEecccccCHHHHHHHHHc--CcEEecCCccccc-cccccC------CCEEEEcCCCCCHHHHHHHHhcCCcEEecc
Q 017886 56 EKIWITNEIIHNPTVNKRLEEM--AVQNIPVEEGKKQ-FDVVNK------GDVVVLPAFGAAVEEMVTLNNKNVQIVDTT 126 (364)
Q Consensus 56 ~~vy~lG~iIHN~~Vv~~L~~~--Gv~~v~~~~~~~~-~~~l~~------g~~VIIrAHGv~~~v~~~l~~~g~~iiDaT 126 (364)
..|+.+|+++. +.+++.|++. .+.+|..+-+... +..+|. +..-|+=.||-++..
T Consensus 52 D~ii~~GD~~~-~~~~~~l~~~~~~v~~V~GNhD~~~~~~~lp~~~~~~~~g~~i~l~HG~~~~~--------------- 115 (178)
T 2kkn_A 52 DGVIGLGDYVD-LDTVILLEKFSKEFYGVHGNMDYPDVKEHLPFSKVLLVEGVTIGMCHGWGAPW--------------- 115 (178)
T ss_dssp SEEEESSCBSC-HHHHHHHHHHTSSEEECCCSSSCGGGGGTSCSCEEEEETTEEEEECCSCCCHH---------------
T ss_pred CEEEECCCCCC-HHHHHHHHhcCCCEEEEECCCCcHHHHhhCCcceEEEECCEEEEEECCCCCCC---------------
Confidence 57999999987 5788999887 4666764322111 223332 223355678864210
Q ss_pred CchhHHHHHHHHHHhhCCCeEEEEecCCCceee
Q 017886 127 CPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETV 159 (364)
Q Consensus 127 CP~V~kv~~~v~~~~~~Gy~iIIiG~~~HpEv~ 159 (364)
.....+.+..+.+..+++.|+--.|.+.
T Consensus 116 -----~~~~~~~~~~~~~~d~vi~GHtH~~~~~ 143 (178)
T 2kkn_A 116 -----DLKDRLLKVFNEKPQVILFGHTHEPEDT 143 (178)
T ss_dssp -----HHHHHHHHHSSSCCSEEECCSCSSCCEE
T ss_pred -----CHHHHHHHHhccCCCEEEECccCCCCeE
Confidence 0112222223378899999987777654
No 53
>3n0x_A Possible substrate binding protein of ABC transpo system; receptor family ligand binding region, structural genomics; HET: MSE; 1.50A {Rhodopseudomonas palustris} PDB: 3nnd_B
Probab=52.75 E-value=13 Score=34.68 Aligned_cols=55 Identities=13% Similarity=0.093 Sum_probs=40.9
Q ss_pred ccccccccccHHHHHHHHHHHHhhh-hCCCEEEEEcCCCCchhHHHHHHHHhhCCCeEE
Q 017886 255 EHFISFNTICDATQERQDAMYKMVE-EKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYW 312 (364)
Q Consensus 255 ~~~~v~nTIC~AT~~RQ~a~~eLa~-~~vD~miVVGGknSSNT~rL~eia~~~~~~t~~ 312 (364)
-++.+.|+-|....-.+ ++++|.. ..|++ |||+..|+.+..+..++.+.+.|.+.
T Consensus 47 i~l~~~D~~~~~~~a~~-~~~~li~~~~v~a--iiG~~~s~~~~a~~~~~~~~~ip~i~ 102 (374)
T 3n0x_A 47 IVVITKDDQSKPDLSKA-ALAEAYQDDGADI--AIGTSSSAAALADLPVAEENKKILIV 102 (374)
T ss_dssp EEEEEEECTTCHHHHHH-HHHHHHHTSCCSE--EEECSSHHHHHHHHHHHHHHTCCEEE
T ss_pred EEEEEecCCCCHHHHHH-HHHHHHHhCCceE--EEcCCCcHHHHHHHHHHHHcCccEEE
Confidence 36678899888766554 4566652 24554 66999999999999999999877653
No 54
>4f06_A Extracellular ligand-binding receptor; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: MSE PHB; 1.30A {Rhodopseudomonas palustris} PDB: 4evs_A*
Probab=52.22 E-value=5.6 Score=37.31 Aligned_cols=66 Identities=9% Similarity=0.213 Sum_probs=44.8
Q ss_pred ccccccccccHHHHHHHHHHHHhhhhCCCEEEEEcCCCCchhHHHHHHHHhhCCCeEEeC-CCCccCC
Q 017886 255 EHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWID-SEKRIGP 321 (364)
Q Consensus 255 ~~~~v~nTIC~AT~~RQ~a~~eLa~~~vD~miVVGGknSSNT~rL~eia~~~~~~t~~Ie-~~~eL~~ 321 (364)
-++.+.|+-|.....=..++++|. .+=.+..|||+..|+.+.-+..++++.+.|.+.-. +..+|..
T Consensus 45 ielv~~D~~~~~p~~a~~~a~~Li-~~d~V~aiiG~~~S~~~~a~~~~~~~~~vp~i~~~a~~~~~~~ 111 (371)
T 4f06_A 45 VEFVYRDEVSPNPAQSKALAQELI-VKEKVQYLAGLYFTPNAMAVAPLLQEAKVPMVVMNAATSSITE 111 (371)
T ss_dssp EEEEEEECCSSCHHHHHHHHHHHH-HTSCCSEEEECCSHHHHHHHGGGHHHHTCCEEESSCCCGGGGG
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHH-hcCCCEEEEecccccchHHHHHHHHhhcCCccccccccchhcc
Confidence 356688888743333345567776 22234457899999999999999999998876543 3444533
No 55
>2qh8_A Uncharacterized protein; conserved domain protein, structural genomics, PSI-2, MCSG, BIG_563.1, protein structure initiative; HET: HIS; 2.20A {Vibrio cholerae o1 biovar eltor str} PDB: 3lkv_A*
Probab=52.14 E-value=61 Score=29.15 Aligned_cols=88 Identities=16% Similarity=0.180 Sum_probs=50.0
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHHHhhhccc-ccccccccccccccHHHHHHHHHHHHhhhhCCCEEEEEcCCCCchh
Q 017886 218 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGV-ENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNT 296 (364)
Q Consensus 218 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~-~~~~~~~~v~nTIC~AT~~RQ~a~~eLa~~~vD~miVVGGknSSNT 296 (364)
..|+++ + +++-.-|.++++-+++.+.+. +. ....-.+.+.||--+...++ +.++.|.+.++|.+|++|. ..+
T Consensus 9 ~~IGvi-~-~~~~p~~~~~~~gi~~~l~~~-Gy~~g~~v~l~~~~~~~~~~~~~-~~~~~l~~~~vDgII~~~~---~~~ 81 (302)
T 2qh8_A 9 AKVAVS-Q-IVEHPALDATRQGLLDGLKAK-GYEEGKNLEFDYKTAQGNPAIAV-QIARQFVGENPDVLVGIAT---PTA 81 (302)
T ss_dssp EEEEEE-E-SSCCHHHHHHHHHHHHHHHHT-TCCBTTTEEEEEEECTTCHHHHH-HHHHHHHHTCCSEEEEESH---HHH
T ss_pred cEEEEE-E-eccChhHHHHHHHHHHHHHHc-CCCCCCceEEEEecCCCCHHHHH-HHHHHHHhCCCCEEEECCh---HHH
Confidence 589998 5 466667888888887754443 21 00000222334433333222 3456666678999999873 223
Q ss_pred HHHHHHHHhhCCCeEEeC
Q 017886 297 SHLQEIAEDRGIPSYWID 314 (364)
Q Consensus 297 ~rL~eia~~~~~~t~~Ie 314 (364)
..+.+ ...+.|..++.
T Consensus 82 ~~~~~--~~~~iPvV~~~ 97 (302)
T 2qh8_A 82 QALVS--ATKTIPIVFTA 97 (302)
T ss_dssp HHHHH--HCSSSCEEEEE
T ss_pred HHHHh--cCCCcCEEEEe
Confidence 33433 25678988775
No 56
>1jr2_A Uroporphyrinogen-III synthase; heme biosynthesis, HEAM biosynthesis, lyase; 1.84A {Homo sapiens} SCOP: c.113.1.1
Probab=51.66 E-value=67 Score=29.28 Aligned_cols=115 Identities=12% Similarity=0.117 Sum_probs=66.9
Q ss_pred chHHHHHHHcCCccccc-ceEEEEe-------------CCCCCcccHHHHHHHHHHHHhh--------------CCCCce
Q 017886 7 SDIIKKLKENGFEYTWG-NVKVKLA-------------ESYGFCWGVERAVQIAYEARKQ--------------FPEEKI 58 (364)
Q Consensus 7 ~~~~~~~~~~~~~~~~~-~mkI~lA-------------~~~GFC~GV~RAi~~a~~~~~~--------------~~~~~v 58 (364)
+++.+.|++.|+....- .++|.-. ......|==.+||+...+.+.+ .++.++
T Consensus 38 ~~l~~~L~~~G~~~~~~P~i~i~~~~~~~l~~~l~~~~~~d~lifTS~naV~~~~~~l~~~~~~~~~~~d~~~~l~~~~i 117 (286)
T 1jr2_A 38 DPYIRELGLYGLEATLIPVLSFEFLSLPSFSEKLSHPEDYGGLIFTSPRAVEAAELCLEQNNKTEVWERSLKEKWNAKSV 117 (286)
T ss_dssp CHHHHHHHTTTCEEEEEECEEEEECCHHHHHHHHTCGGGCSEEEECCHHHHHHHHHHHHHTTCHHHHHHHTHHHHHHSEE
T ss_pred cHHHHHHHHCCCceEEEeeEEEecCCHHHHHHHHhCcccccEEEEeCHHHHHHHHHHHHhccccccchhhHHHHhccCcE
Confidence 78999999999765443 2444321 1112233223444443333221 112479
Q ss_pred EEecccccCHHHHHHHHHcCcEEe-cCCccccccc-----c-ccCCCEEEEcCCCCCHHHHHHHHhcCCcEEecc
Q 017886 59 WITNEIIHNPTVNKRLEEMAVQNI-PVEEGKKQFD-----V-VNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTT 126 (364)
Q Consensus 59 y~lG~iIHN~~Vv~~L~~~Gv~~v-~~~~~~~~~~-----~-l~~g~~VIIrAHGv~~~v~~~l~~~g~~iiDaT 126 (364)
|+.|+ ..-+.|++.|+..+ ......+.|- . .+...++++|+-+-.+...+.|+++|..|....
T Consensus 118 ~aVG~-----~Ta~aL~~~G~~~~~p~~~~ae~L~~~l~~~~~~g~~vLi~rg~~~r~~L~~~L~~~G~~v~~~~ 187 (286)
T 1jr2_A 118 YVVGN-----ATASLVSKIGLDTEGETCGNAEKLAEYICSRESSALPLLFPCGNLKREILPKALKDKGIAMESIT 187 (286)
T ss_dssp EECSH-----HHHHHHHHTTCCCSCCSCSSHHHHHHHHHTSCCCSSCEEEEESCGGGCCHHHHHHTTTCCEEEEE
T ss_pred EEECH-----HHHHHHHHcCCCcCCCCccCHHHHHHHHHhcccCCCeEEEECChhhHHHHHHHHHHCCCeeEEEE
Confidence 99994 56688999998853 2111111111 1 122356788888888889999999999875443
No 57
>3re1_A Uroporphyrinogen-III synthetase; HEMD-like family, uroporphyrinogen III synthase, HMB, lyase; 2.50A {Pseudomonas syringae PV}
Probab=51.21 E-value=43 Score=30.42 Aligned_cols=116 Identities=11% Similarity=0.090 Sum_probs=70.0
Q ss_pred cchHHHHHHHcCCccccc-ceEEEEe--------------CCCCCcccHHHHHHHHHHHHhh-C---CCCceEEeccccc
Q 017886 6 TSDIIKKLKENGFEYTWG-NVKVKLA--------------ESYGFCWGVERAVQIAYEARKQ-F---PEEKIWITNEIIH 66 (364)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~-~mkI~lA--------------~~~GFC~GV~RAi~~a~~~~~~-~---~~~~vy~lG~iIH 66 (364)
.+++++.|++.|+....- .+++.-. ......|==.+||+...+.+++ + +..++|+.|+
T Consensus 26 a~~l~~~L~~~G~~~~~~P~i~i~~~~~~~~l~~~l~~l~~~d~vifTS~naV~~~~~~l~~~~~~~~~~~i~aVG~--- 102 (269)
T 3re1_A 26 SAALARVLADAGIFSSSLPLLETEPLPLTPAQRSIIFELLNYSAVIVVSKPAARLAIELIDEVWPQPPMQPWFSVGS--- 102 (269)
T ss_dssp HHHHHHHHHTTTCEEEECCCCEEEECCCHHHHHHHHHTGGGSSEEEECSHHHHHHHHHHHHHHCSSCCCSCEEESSH---
T ss_pred HHHHHHHHHHCCCCEEEcCCEEEecCCCcHHHHHHHHhccCCCEEEEECHHHHHHHHHHHHHhCCCcccCEEEEECH---
Confidence 467889999998655443 2344321 1223344445555555554432 1 1247999995
Q ss_pred CHHHHHHHHHcCcEEecCCcc--ccccc---------cccCCCEEEEcCCCCCHHHHHHHHhcCCcEEecc
Q 017886 67 NPTVNKRLEEMAVQNIPVEEG--KKQFD---------VVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTT 126 (364)
Q Consensus 67 N~~Vv~~L~~~Gv~~v~~~~~--~~~~~---------~l~~g~~VIIrAHGv~~~v~~~l~~~g~~iiDaT 126 (364)
..-+.|++.|+...-.+++ .+.|- ..+...++++|+-+-.+...+.|+++|..|....
T Consensus 103 --~Ta~aL~~~G~~~~~~~~~~~~e~L~~~l~l~~~~~~~g~~vLi~rg~~~r~~L~~~L~~~G~~v~~~~ 171 (269)
T 3re1_A 103 --ATGQILLDYGLDASWPEQGDDSEALLDHPRLKQAIAVPGSRVLIMRGNEGRELLAEQLRERGVGVDYLP 171 (269)
T ss_dssp --HHHHHHHHTTCCEECC-------CGGGCHHHHHHHCSSSCEEEEEECSSCCCHHHHHHHHTTCEEEEEE
T ss_pred --HHHHHHHHcCCCcccCCCCCCHHHHHHhhhhcccccCCCCEEEEEccCccHHHHHHHHHHCCCEEEEEe
Confidence 5668999999976432221 11111 2222345789999999999999999999885543
No 58
>4gnr_A ABC transporter substrate-binding protein-branche amino acid transport; amino acid-binding protein, surface-exposed protein; HET: MLY; 1.00A {Streptococcus pneumoniae}
Probab=51.15 E-value=10 Score=34.75 Aligned_cols=65 Identities=14% Similarity=0.145 Sum_probs=47.1
Q ss_pred ccccccccccHHHHHHHHHHHHhhhhCCCEEEEEcCCCCchhHHHHHHHHhhCCCeEEe-CCCCccCC
Q 017886 255 EHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWI-DSEKRIGP 321 (364)
Q Consensus 255 ~~~~v~nTIC~AT~~RQ~a~~eLa~~~vD~miVVGGknSSNT~rL~eia~~~~~~t~~I-e~~~eL~~ 321 (364)
-++.+.||-|++..-.+. +++|. .+-.+++|+|+..|+.+.....++.+.+.|.+.- -+...|..
T Consensus 49 ielv~~D~~~~p~~a~~~-a~~li-~~~~v~~i~g~~~s~~~~a~~~~~~~~~vp~i~~~~~~~~l~~ 114 (353)
T 4gnr_A 49 IEVVDKDNKSETAEAASV-TTNLV-TQSKVSAVVGPATSGATAAAVANATKAGVPLISPSATQDGLTK 114 (353)
T ss_dssp EEEEEEECTTCHHHHHHH-HHHHH-HTSCCSEEECCCSHHHHHHHHHHHHHTTCCEEESSCCCTTTTT
T ss_pred EEEEEecCCCCHHHHHHH-HHHHH-hhCCceEEeccccCcccceehhhhhccCcceEeeccccccccc
Confidence 356788999998877665 55665 3344567788899999999999999998886643 34444543
No 59
>3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A*
Probab=50.85 E-value=90 Score=29.10 Aligned_cols=94 Identities=7% Similarity=-0.024 Sum_probs=66.6
Q ss_pred HHHHHHHhhCCCCceEEecccccCHHHHHHHHHcCcEEecCCccccccccccCCCEEEEcCCCCCHHHHHHHHh------
Q 017886 44 QIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNN------ 117 (364)
Q Consensus 44 ~~a~~~~~~~~~~~vy~lG~iIHN~~Vv~~L~~~Gv~~v~~~~~~~~~~~l~~g~~VIIrAHGv~~~v~~~l~~------ 117 (364)
-||...++. +-+|+++- .|+.-.+.|.+.|....++ +.++-.+.-|||..=.-++.+.+.+..
T Consensus 17 ~mA~~L~~~--G~~v~v~d---r~~~~~~~l~~~Ga~~a~s------~~e~~~~~dvv~~~l~~~~~v~~V~~~~~g~~~ 85 (300)
T 3obb_A 17 PMATNLLKA--GYLLNVFD---LVQSAVDGLVAAGASAARS------ARDAVQGADVVISMLPASQHVEGLYLDDDGLLA 85 (300)
T ss_dssp HHHHHHHHT--TCEEEEEC---SSHHHHHHHHHTTCEECSS------HHHHHTTCSEEEECCSCHHHHHHHHHSSSSSTT
T ss_pred HHHHHHHhC--CCeEEEEc---CCHHHHHHHHHcCCEEcCC------HHHHHhcCCceeecCCchHHHHHHHhchhhhhh
Confidence 356666664 23576653 4788999999999999875 344434444666666667777766542
Q ss_pred ---cCCcEEeccCchhHHHHHHHHHHhhCCCeEE
Q 017886 118 ---KNVQIVDTTCPWVSKVWTSVEKHKKGDYTSI 148 (364)
Q Consensus 118 ---~g~~iiDaTCP~V~kv~~~v~~~~~~Gy~iI 148 (364)
.|-.|||.|=-.....++.++.+.+.|-..+
T Consensus 86 ~~~~g~iiId~sT~~p~~~~~~a~~~~~~G~~~l 119 (300)
T 3obb_A 86 HIAPGTLVLECSTIAPTSARKIHAAARERGLAML 119 (300)
T ss_dssp SCCC-CEEEECSCCCHHHHHHHHHHHHTTTCEEE
T ss_pred cCCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEE
Confidence 4677899988888888999999988886655
No 60
>3mw8_A Uroporphyrinogen-III synthase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, lyase; 1.65A {Shewanella amazonensis}
Probab=50.69 E-value=37 Score=29.98 Aligned_cols=114 Identities=13% Similarity=0.126 Sum_probs=71.0
Q ss_pred ccchHHHHHHHcCCccccc-ceEEEEe-----------CCCCCcccHHHHHHHHHHHHh-hCCCCceEEecccccCHHHH
Q 017886 5 YTSDIIKKLKENGFEYTWG-NVKVKLA-----------ESYGFCWGVERAVQIAYEARK-QFPEEKIWITNEIIHNPTVN 71 (364)
Q Consensus 5 y~~~~~~~~~~~~~~~~~~-~mkI~lA-----------~~~GFC~GV~RAi~~a~~~~~-~~~~~~vy~lG~iIHN~~Vv 71 (364)
..+++.+.|++.|+....- .+++.-. ......|==.+|++...+.+. ..++.++|+.|+ ..-
T Consensus 12 ~~~~l~~~L~~~G~~~~~~P~i~i~~~~~~~~~~~~l~~~d~viftS~~aV~~~~~~l~~~l~~~~~~aVG~-----~Ta 86 (240)
T 3mw8_A 12 KNAAMASALDALAIPYLVEPLLSVEAAAVTQAQLDELSRADILIFISTSAVSFATPWLKDQWPKATYYAVGD-----ATA 86 (240)
T ss_dssp SCHHHHHHHHHHTCCEEECCSCEEEECCCCHHHHHHHTTCSEEEECSHHHHHHHHHHHTTCCCSSEEEESSH-----HHH
T ss_pred HhHHHHHHHHHCCCcEEEeCcEEEeccccHHHHHHHhcCCCEEEEECHHHHHHHHHHHHhhCcCCeEEEECH-----HHH
Confidence 3578899999998655443 3444322 223344444566666655553 233457999986 456
Q ss_pred HHHHHcCcEEecCCc---ccccccc------ccCCCEEEEcCCCCCHHHHHHHHhcCCcEE
Q 017886 72 KRLEEMAVQNIPVEE---GKKQFDV------VNKGDVVVLPAFGAAVEEMVTLNNKNVQIV 123 (364)
Q Consensus 72 ~~L~~~Gv~~v~~~~---~~~~~~~------l~~g~~VIIrAHGv~~~v~~~l~~~g~~ii 123 (364)
+.|++.|+..+-.++ ..+.|-+ ++...++++|+-+-.+...+.|+++|..|.
T Consensus 87 ~~L~~~G~~~~~~p~~~~~~e~L~~~~~~~~~~g~~vL~~rg~~~r~~l~~~L~~~G~~v~ 147 (240)
T 3mw8_A 87 DALALQGITAERSPADSQATEGLLTLPSLEQVSGKQIVIVRGKGGREAMADGLRLRGANVS 147 (240)
T ss_dssp HHHHHTTCCCEECC---CCGGGGGGCGGGTCCTTCEEEEEEESSSCCHHHHHHHHTTCEEE
T ss_pred HHHHHcCCCCccCCCCcCCHHHHHHhhhhccCCCCEEEEEeCCCcHHHHHHHHHHCCCEEE
Confidence 899999996532221 1122222 222345688999889999999999998763
No 61
>3o21_A Glutamate receptor 3; periplasmatic binding protein, oligomerization, membrane, TR protein; HET: NAG; 2.20A {Rattus norvegicus} PDB: 3p3w_A
Probab=49.60 E-value=11 Score=35.76 Aligned_cols=53 Identities=6% Similarity=0.051 Sum_probs=40.9
Q ss_pred ccccccccc-HHHHHHHHHHHHhhhhCCCEEEEEcCCCCchhHHHHHHHHhhCCCeE
Q 017886 256 HFISFNTIC-DATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSY 311 (364)
Q Consensus 256 ~~~v~nTIC-~AT~~RQ~a~~eLa~~~vD~miVVGGknSSNT~rL~eia~~~~~~t~ 311 (364)
++.+.|+-| ....-.+ ++.+|.. + .++.|||...|+.+.-...++.+.+.|.+
T Consensus 44 ~~~~~D~~~~d~~~a~~-~a~~li~-~-~V~aiiG~~~S~~~~a~~~i~~~~~iP~I 97 (389)
T 3o21_A 44 NYHVDHLDSSNSFSVTN-AFCSQFS-R-GVYAIFGFYDQMSMNTLTSFCGALHTSFV 97 (389)
T ss_dssp EEEEEECCTTCHHHHHH-HHHHHHT-T-TCSCEEECCCTTTHHHHHHHHHHHTCCEE
T ss_pred EEEEEecCCCChHHHHH-HHHHHHh-c-CcEEEEeCCChhHHHHHHHHhccCCCcee
Confidence 566788889 5554444 4556653 3 67789999999999999999999998865
No 62
>1gud_A ALBP, D-allose-binding periplasmic protein; periplasmic binding protein, X-RAY crystallography, hinge bending, conformational change; 1.7A {Escherichia coli} SCOP: c.93.1.1 PDB: 1gub_A 1rpj_A*
Probab=49.46 E-value=76 Score=28.08 Aligned_cols=90 Identities=14% Similarity=0.018 Sum_probs=50.6
Q ss_pred eEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHHH-HHHHhhhhCCCEEEEEcCCCCchhH
Q 017886 219 KVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQD-AMYKMVEEKVDLILVVGGWNSSNTS 297 (364)
Q Consensus 219 kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ~-a~~eLa~~~vD~miVVGGknSSNT~ 297 (364)
.|+++... ++-.-|.++.+-+.+...+. + -++.+.++-.....++|. .+..|...++|.+|+.+.. +....
T Consensus 3 ~Igvi~~~-~~~~f~~~~~~gi~~~a~~~-g-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiIi~~~~-~~~~~ 74 (288)
T 1gud_A 3 EYAVVLKT-LSNPFWVDMKKGIEDEAKTL-G-----VSVDIFASPSEGDFQSQLQLFEDLSNKNYKGIAFAPLS-SVNLV 74 (288)
T ss_dssp EEEEEESC-SSSHHHHHHHHHHHHHHHHH-T-----CCEEEEECSSTTCHHHHHHHHHHHHTSSEEEEEECCSS-SSTTH
T ss_pred EEEEEeCC-CCchHHHHHHHHHHHHHHHc-C-----CEEEEeCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCC-hHHHH
Confidence 57777654 44456777777776543322 1 223333311122334443 3455544689999998654 33333
Q ss_pred HHHHHHHhhCCCeEEeCCC
Q 017886 298 HLQEIAEDRGIPSYWIDSE 316 (364)
Q Consensus 298 rL~eia~~~~~~t~~Ie~~ 316 (364)
.+.+-+.+.+.|...+.+.
T Consensus 75 ~~~~~~~~~~iPvV~~~~~ 93 (288)
T 1gud_A 75 MPVARAWKKGIYLVNLDEK 93 (288)
T ss_dssp HHHHHHHHTTCEEEEESSC
T ss_pred HHHHHHHHCCCeEEEECCC
Confidence 3445556788999999874
No 63
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=49.08 E-value=82 Score=28.67 Aligned_cols=124 Identities=13% Similarity=0.152 Sum_probs=66.6
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHHHH-HHHhhhhCCCEEEEEcCCCCchh
Q 017886 218 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDA-MYKMVEEKVDLILVVGGWNSSNT 296 (364)
Q Consensus 218 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ~a-~~eLa~~~vD~miVVGGknSSNT 296 (364)
..|+++.... +-.-|.++++-+.+...+. + -++.++++ .....+|.. ++.|.+..+|.+|+.+...+.
T Consensus 63 ~~Igvi~~~~-~~~~~~~~~~gi~~~a~~~-g-----~~~~~~~~--~~~~~~~~~~~~~l~~~~vdGiIi~~~~~~~-- 131 (339)
T 3h5o_A 63 RTVLVLIPSL-ANTVFLETLTGIETVLDAA-G-----YQMLIGNS--HYDAGQELQLLRAYLQHRPDGVLITGLSHAE-- 131 (339)
T ss_dssp CEEEEEESCS-TTCTTHHHHHHHHHHHHHT-T-----CEEEEEEC--TTCHHHHHHHHHHHHTTCCSEEEEECSCCCT--
T ss_pred CEEEEEeCCC-CCHHHHHHHHHHHHHHHHC-C-----CEEEEEeC--CCChHHHHHHHHHHHcCCCCEEEEeCCCCCH--
Confidence 4788887653 3334666766666543322 2 22333322 223345543 444444689999999865443
Q ss_pred HHHHHHHHhhCCCeEEeCCCCccCCCCcchhhh-ccchhhhhcccC-CCCCCEEEEEeCCCC
Q 017886 297 SHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKL-MHGELVEKENWL-PKGQITIGITSGAST 356 (364)
Q Consensus 297 ~rL~eia~~~~~~t~~Ie~~~eL~~~~~~~~~~-~~~~~~~~~~wl-~~~~~~VGITAGAST 356 (364)
.+.+.+.+.+.|...+.+..+-+.. .+.... ..|... -++| ..|.++||+..|...
T Consensus 132 -~~~~~l~~~~iPvV~~~~~~~~~~~-~V~~D~~~~~~~a--~~~L~~~G~~~I~~i~~~~~ 189 (339)
T 3h5o_A 132 -PFERILSQHALPVVYMMDLADDGRC-CVGFSQEDAGAAI--TRHLLSRGKRRIGFLGAQLD 189 (339)
T ss_dssp -THHHHHHHTTCCEEEEESCCSSSCC-EEECCHHHHHHHH--HHHHHHTTCCSEEEEEESCC
T ss_pred -HHHHHHhcCCCCEEEEeecCCCCCe-EEEECHHHHHHHH--HHHHHHCCCCeEEEEeCCCC
Confidence 4566677888999988654332221 111111 111111 1222 248899999988653
No 64
>2h1v_A Ferrochelatase; rossman fold, PI-helix, lyase; 1.20A {Bacillus subtilis} PDB: 2hk6_A 1c1h_A* 1ld3_A 1n0i_A 1ak1_A 3goq_A 1doz_A 2q2n_A* 3m4z_A 2h1w_A 2ac2_A 2q3j_A* 2ac4_A 2q2o_A* 1c9e_A* 2c8j_A
Probab=48.16 E-value=41 Score=31.76 Aligned_cols=91 Identities=10% Similarity=0.073 Sum_probs=52.7
Q ss_pred cccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHHcCcEEecCCccccccc-cccCCCEEEEcCCCCCHHHHHH
Q 017886 36 CWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFD-VVNKGDVVVLPAFGAAVEEMVT 114 (364)
Q Consensus 36 C~GV~RAi~~a~~~~~~~~~~~vy~lG~iIHN~~Vv~~L~~~Gv~~v~~~~~~~~~~-~l~~g~~VIIrAHGv~~~v~~~ 114 (364)
|....-+.+.+.+++++.+.-.+-..-++=-+|..++.|.++=-..+.. +. ..++++.||+.+||+|....+
T Consensus 119 ~st~g~~~~~i~~~l~~~~~~~i~~i~~~~~~p~~i~a~a~~i~~~l~~------~~~~~~~~~~llfs~HG~P~~~~~- 191 (310)
T 2h1v_A 119 TFSVQSYNKRAKEEAEKLGGLTITSVESWYDEPKFVTYWVDRVKETYAS------MPEDERENAMLIVSAHSLPEKIKE- 191 (310)
T ss_dssp TTTHHHHHHHHHHHHHHHCSCEEEECCCCTTCHHHHHHHHHHHHHHHHH------SCHHHHTSEEEEEEEECCBGGGGG-
T ss_pred hhhHHHHHHHHHHHHHhCCCCeEEEeCCCCCCHHHHHHHHHHHHHHHHh------cccccCCCceEEEecCCCchhhcc-
Confidence 3444455555555555433334666666666777777765541111110 00 112456899999999977542
Q ss_pred HHhcCCcEEeccCchhHHHHHHHHHHhhC
Q 017886 115 LNNKNVQIVDTTCPWVSKVWTSVEKHKKG 143 (364)
Q Consensus 115 l~~~g~~iiDaTCP~V~kv~~~v~~~~~~ 143 (364)
+ .-|+-..+++.++.+.+.
T Consensus 192 ---~-------gDpY~~~~~~t~~~l~e~ 210 (310)
T 2h1v_A 192 ---F-------GDPYPDQLHESAKLIAEG 210 (310)
T ss_dssp ---G-------TCCHHHHHHHHHHHHHHH
T ss_pred ---C-------CCChHHHHHHHHHHHHHH
Confidence 2 356888888888776553
No 65
>3snr_A Extracellular ligand-binding receptor; structural genomics, APC102214, PSI-biology, midwest center structural genomics, MCSG; HET: MSE TYR PHE; 1.49A {Rhodopseudomonas palustris} PDB: 3uk0_A* 3t23_A* 3ukj_A* 4eyo_A* 4eyq_A* 3tx6_A* 4f8j_A* 4fb4_A*
Probab=47.88 E-value=21 Score=32.37 Aligned_cols=58 Identities=21% Similarity=0.312 Sum_probs=42.3
Q ss_pred cccccccccHHHHHHHHHHHHhhhh-CCCEEEEEcCCCCchhHHHHHHHHhhCCCeEEeCCC
Q 017886 256 HFISFNTICDATQERQDAMYKMVEE-KVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSE 316 (364)
Q Consensus 256 ~~~v~nTIC~AT~~RQ~a~~eLa~~-~vD~miVVGGknSSNT~rL~eia~~~~~~t~~Ie~~ 316 (364)
++.+.|+-|......+ ++++|... +||++ ||...|+.+..+.+++++.+.|.+.....
T Consensus 44 ~l~~~d~~~~~~~~~~-~~~~l~~~~~v~~i--ig~~~s~~~~~~~~~~~~~~ip~v~~~~~ 102 (362)
T 3snr_A 44 KIIVLDDGGDPTAATT-NARRFVTESKADVI--MGSSVTPPSVAISNVANEAQIPHIALAPL 102 (362)
T ss_dssp EEEEEECTTCHHHHHH-HHHHHHHTSCCSEE--EECSSHHHHHHHHHHHHHHTCCEEESSCC
T ss_pred EEEEecCCCCHHHHHH-HHHHHHhccCceEE--EcCCCcHHHHHHHHHHHHcCccEEEecCC
Confidence 4567788887765544 45556534 57764 57788888889999999999998877654
No 66
>3h5l_A Putative branched-chain amino acid ABC transporter; structural genomics, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi}
Probab=47.86 E-value=14 Score=34.97 Aligned_cols=59 Identities=15% Similarity=0.293 Sum_probs=42.5
Q ss_pred ccccccccc-cHHHHHHHHHHHHhhhhCCCEEEEEcCCCCchhHHHHHHHHhhCCCeEEeCC
Q 017886 255 EHFISFNTI-CDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDS 315 (364)
Q Consensus 255 ~~~~v~nTI-C~AT~~RQ~a~~eLa~~~vD~miVVGGknSSNT~rL~eia~~~~~~t~~Ie~ 315 (364)
-++.+.||- |+.+.-.+ ++++|.. +-.+..|||+..|+++..+..++.+.+.|.+...+
T Consensus 56 i~l~~~D~~~~~~~~a~~-~a~~li~-~~~v~aiiG~~~s~~~~a~~~~~~~~~ip~i~~~~ 115 (419)
T 3h5l_A 56 IELVFADTQSKGVDVVIQ-SAQRLID-RDNASALIAGYNLENGTALHDVAADAGVIAMHANT 115 (419)
T ss_dssp EEEEEEECTTCCHHHHHH-HHHHHHH-TTCCSEEECSCCSSCSCHHHHHHHHHTCEEEECCC
T ss_pred EEEEEccCCCCCHHHHHH-HHHHHhh-hcCCeEEEccccchhHHHhHHHHHHcCCeEEEcCc
Confidence 356788886 77765544 4556653 23445567999999999999999999988776433
No 67
>2a22_A Vacuolar protein sorting 29; alpha-beta-BETA-alpha sandwich, structural genomics, structural genomics consortium, SGC, protein transport; 2.20A {Cryptosporidium parvum} SCOP: d.159.1.7
Probab=47.77 E-value=46 Score=29.11 Aligned_cols=65 Identities=14% Similarity=0.016 Sum_probs=35.1
Q ss_pred cCCcccccceEEEEeCCCCCccc---HHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHHcC--cEEecC
Q 017886 16 NGFEYTWGNVKVKLAESYGFCWG---VERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMA--VQNIPV 84 (364)
Q Consensus 16 ~~~~~~~~~mkI~lA~~~GFC~G---V~RAi~~a~~~~~~~~~~~vy~lG~iIHN~~Vv~~L~~~G--v~~v~~ 84 (364)
++.+..-++|+|.+..-.=.+.. ..+++ .+.+++.+...|+.+|+|++ +.+++.|++.+ +.+|..
T Consensus 17 ~~~~~~~m~m~i~~iSD~H~~~~~~~l~~~l---~~~~~~~~~D~vi~~GDl~~-~~~l~~l~~~~~~v~~V~G 86 (215)
T 2a22_A 17 RGSSSTDFGDLVLLIGDLKIPYGAKELPSNF---RELLATDKINYVLCTGNVCS-QEYVEMLKNITKNVYIVSG 86 (215)
T ss_dssp ------CCCEEEEEECCCCTTTTCSSCCGGG---HHHHHCTTCCEEEECSCCCC-HHHHHHHHHHCSCEEECCC
T ss_pred CCCCccccCcEEEEEecCCCCCChHHHHHHH---HHHHhcCCCCEEEECCCCCC-HHHHHHHHHcCCCEEEecC
Confidence 44444445788766543322332 12222 22222222346999999996 78899999987 556654
No 68
>3hsy_A Glutamate receptor 2; ligand-gated ION channel, synapse, cell CELL membrane, endoplasmic reticulum, glycoprotein, ION TRA ionic channel; HET: NAG BMA; 1.75A {Rattus norvegicus} PDB: 3h5v_A* 3h5w_A 3o2j_A* 2wjw_A* 2wjx_A 3n6v_A
Probab=47.74 E-value=12 Score=35.04 Aligned_cols=57 Identities=5% Similarity=-0.020 Sum_probs=40.6
Q ss_pred cccccccccHHHHHHHHHHHHhhhhCCCEEEEEcCCCCchhHHHHHHHHhhCCCeEEeC
Q 017886 256 HFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWID 314 (364)
Q Consensus 256 ~~~v~nTIC~AT~~RQ~a~~eLa~~~vD~miVVGGknSSNT~rL~eia~~~~~~t~~Ie 314 (364)
++.+.|+-|.....-.+++.+|... .+..|||+..|+.+.-+..++.+.+.|-+--.
T Consensus 35 ~~~~~d~~~~d~~~a~~~~~~li~~--~V~aiiG~~~S~~~~av~~~~~~~~ip~is~~ 91 (376)
T 3hsy_A 35 TPHIDNLEVANSFAVTNAFCSQFSR--GVYAIFGFYDKKSVNTITSFCGTLHVSFITPS 91 (376)
T ss_dssp EEEEEEECTTCHHHHHHHHHHHHHT--TCSEEEECCCTTTHHHHHHHHHHHTCEEEECS
T ss_pred EEEEeecCCCChHHHHHHHHHHHhc--CcEEEECCCchhHHHHHHHHhccCcCceeecC
Confidence 3456677784444444556666533 56679999999999999999999988755433
No 69
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=47.73 E-value=1.1e+02 Score=26.86 Aligned_cols=125 Identities=14% Similarity=0.103 Sum_probs=65.5
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHHH----HHHHhhhhCCCEEEEEcCCCC
Q 017886 218 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQD----AMYKMVEEKVDLILVVGGWNS 293 (364)
Q Consensus 218 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ~----a~~eLa~~~vD~miVVGGknS 293 (364)
..|+++.-. ++-.-|.++.+-+.+...+. + -++.++++- ...++|. .++.|.+..+|.+|+.+...+
T Consensus 9 ~~Ig~i~~~-~~~~~~~~~~~gi~~~a~~~-g-----~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~ 79 (290)
T 2rgy_A 9 GIIGLFVPT-FFGSYYGTILKQTDLELRAV-H-----RHVVVATGC--GESTPREQALEAVRFLIGRDCDGVVVISHDLH 79 (290)
T ss_dssp CEEEEECSC-SCSHHHHHHHHHHHHHHHHT-T-----CEEEEECCC--SSSCHHHHHHHHHHHHHHTTCSEEEECCSSSC
T ss_pred CeEEEEeCC-CCCchHHHHHHHHHHHHHHC-C-----CEEEEEeCC--CchhhhhhHHHHHHHHHhcCccEEEEecCCCC
Confidence 478888754 34455777777776643322 2 223333321 1123333 455565568999999876543
Q ss_pred chhHHHHHHHHhhCCCeEEeCCCCccCCCCcchhhh-ccchhhhhcccC-CCCCCEEEEEeCCCC
Q 017886 294 SNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKL-MHGELVEKENWL-PKGQITIGITSGAST 356 (364)
Q Consensus 294 SNT~rL~eia~~~~~~t~~Ie~~~eL~~~~~~~~~~-~~~~~~~~~~wl-~~~~~~VGITAGAST 356 (364)
...++.+++.+.|...+.+..+-..-..+.... ..|.. .-+|| ..|.++||+-.|...
T Consensus 80 ---~~~~~~l~~~~iPvV~~~~~~~~~~~~~V~~D~~~~g~~--a~~~L~~~G~~~I~~i~~~~~ 139 (290)
T 2rgy_A 80 ---DEDLDELHRMHPKMVFLNRAFDALPDASFCPDHRRGGEL--AAATLIEHGHRKLAVISGPFT 139 (290)
T ss_dssp ---HHHHHHHHHHCSSEEEESSCCTTSGGGEECCCHHHHHHH--HHHHHHHTTCCSEEEEESCTT
T ss_pred ---HHHHHHHhhcCCCEEEEccccCCCCCCEEEeCcHHHHHH--HHHHHHHCCCceEEEEeCCCC
Confidence 234445556789999887643211100011000 11111 11222 137899999988743
No 70
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=47.55 E-value=1.1e+02 Score=26.71 Aligned_cols=94 Identities=13% Similarity=0.075 Sum_probs=55.2
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHHHhhhccccccccccccccccc-HHHHHHH-HHHHHhhhhCCCEEEEEcCCCCch
Q 017886 218 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTIC-DATQERQ-DAMYKMVEEKVDLILVVGGWNSSN 295 (364)
Q Consensus 218 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~v~nTIC-~AT~~RQ-~a~~eLa~~~vD~miVVGGknSSN 295 (364)
.+|+++.-...+-.-|..+.+-+.+...+.. +-.+.+..+-. .....+| +.+..|...++|.+|+.+...+ .
T Consensus 9 ~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~~-----g~~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~-~ 82 (304)
T 3gbv_A 9 YTFACLLPKHLEGEYWTDVQKGIREAVTTYS-----DFNISANITHYDPYDYNSFVATSQAVIEEQPDGVMFAPTVPQ-Y 82 (304)
T ss_dssp EEEEEEEECCCTTSHHHHHHHHHHHHHHHTG-----GGCEEEEEEEECSSCHHHHHHHHHHHHTTCCSEEEECCSSGG-G
T ss_pred ceEEEEecCCCCchHHHHHHHHHHHHHHHHH-----hCCeEEEEEcCCCCCHHHHHHHHHHHHhcCCCEEEECCCChH-H
Confidence 5788887665344567778777776433320 11233322211 1233444 3345554578999999876433 3
Q ss_pred hHHHHHHHHhhCCCeEEeCCCC
Q 017886 296 TSHLQEIAEDRGIPSYWIDSEK 317 (364)
Q Consensus 296 T~rL~eia~~~~~~t~~Ie~~~ 317 (364)
...+++.+.+.+.|...+.+..
T Consensus 83 ~~~~~~~~~~~~iPvV~~~~~~ 104 (304)
T 3gbv_A 83 TKGFTDALNELGIPYIYIDSQI 104 (304)
T ss_dssp THHHHHHHHHHTCCEEEESSCC
T ss_pred HHHHHHHHHHCCCeEEEEeCCC
Confidence 3555666777899999998743
No 71
>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans}
Probab=47.47 E-value=92 Score=28.17 Aligned_cols=89 Identities=9% Similarity=0.085 Sum_probs=52.9
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHH-HHHHHhhhhC--CCEEEEEcCCCCc
Q 017886 218 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEK--VDLILVVGGWNSS 294 (364)
Q Consensus 218 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ-~a~~eLa~~~--vD~miVVGGknSS 294 (364)
..|+++... ++-.-|.++.+-+.+...+. + -++.++++ .....+| +.++.|.+.. +|.+|+.+... +
T Consensus 6 ~~Igvi~~~-~~~~~~~~~~~gi~~~a~~~-g-----~~l~~~~~--~~~~~~~~~~i~~l~~~~~~vdgiIi~~~~~-~ 75 (332)
T 2rjo_A 6 TTLACSFRS-LTNPYYTAFNKGAQSFAKSV-G-----LPYVPLTT--EGSSEKGIADIRALLQKTGGNLVLNVDPNDS-A 75 (332)
T ss_dssp CEEEEEESC-TTSHHHHHHHHHHHHHHHHH-T-----CCEEEEEC--TTCHHHHHHHHHHHHHHTTTCEEEEECCSSH-H
T ss_pred cEEEEEecC-CCcHHHHHHHHHHHHHHHHc-C-----CEEEEecC--CCCHHHHHHHHHHHHHCCCCCCEEEEeCCCH-H
Confidence 478988865 34456677777776543332 2 23333332 2223444 3455555567 99999876532 2
Q ss_pred hhHHHHHHHHhhCCCeEEeCCC
Q 017886 295 NTSHLQEIAEDRGIPSYWIDSE 316 (364)
Q Consensus 295 NT~rL~eia~~~~~~t~~Ie~~ 316 (364)
....+++.+.+.+.|...+.+.
T Consensus 76 ~~~~~~~~~~~~~iPvV~~~~~ 97 (332)
T 2rjo_A 76 DARVIVEACSKAGAYVTTIWNK 97 (332)
T ss_dssp HHHHHHHHHHHHTCEEEEESCC
T ss_pred HHHHHHHHHHHCCCeEEEECCC
Confidence 2335566666788999988874
No 72
>3sg0_A Extracellular ligand-binding receptor; structural genomics, PSI-biology; HET: 173; 1.20A {Rhodopseudomonas palustris} PDB: 4dqd_A*
Probab=47.38 E-value=23 Score=32.49 Aligned_cols=58 Identities=22% Similarity=0.356 Sum_probs=42.2
Q ss_pred cccccccccHHHHHHHHHHHHhhhh-CCCEEEEEcCCCCchhHHHHHHHHhhCCCeEEeCCC
Q 017886 256 HFISFNTICDATQERQDAMYKMVEE-KVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSE 316 (364)
Q Consensus 256 ~~~v~nTIC~AT~~RQ~a~~eLa~~-~vD~miVVGGknSSNT~rL~eia~~~~~~t~~Ie~~ 316 (364)
++.+.|+-|.....++ .+++|... .||+ |||...|+.+..+.+++++.+.|.+.....
T Consensus 64 ~l~~~d~~~~~~~~~~-~~~~l~~~~~v~~--iig~~~s~~~~~~~~~~~~~~ip~v~~~~~ 122 (386)
T 3sg0_A 64 TYFALDDESDPTKAAQ-NARKLLSEEKVDV--LIGSSLTPVSLPLIDIAAEAKTPLMTMAAA 122 (386)
T ss_dssp EEEEEECTTCHHHHHH-HHHHHHHTSCCSE--EECCSSHHHHHHHHHHHHHTTCCEEECCCC
T ss_pred EEEEecCCCCHHHHHH-HHHHHHhhcCceE--EECCCCchhHHHHHHHHHhcCCeEEEecCC
Confidence 4667788887765544 45566533 4665 558888889999999999999998877653
No 73
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=47.34 E-value=1.1e+02 Score=27.60 Aligned_cols=124 Identities=17% Similarity=0.141 Sum_probs=64.5
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHHH-HHHHhhhhCCCEEEEEcCCCCchh
Q 017886 218 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQD-AMYKMVEEKVDLILVVGGWNSSNT 296 (364)
Q Consensus 218 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ~-a~~eLa~~~vD~miVVGGknSSNT 296 (364)
..|+++.... +-.-|.++.+-+.+...+. + -++.++++ ....++|. .++.|....+|.+|+.+...+.
T Consensus 61 ~~Ig~i~~~~-~~~~~~~~~~gi~~~a~~~-g-----~~~~~~~~--~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~-- 129 (332)
T 2hsg_A 61 TTVGVIIPDI-SNIFYAELARGIEDIATMY-K-----YNIILSNS--DQNQDKELHLLNNMLGKQVDGIIFMSGNVTE-- 129 (332)
T ss_dssp CEEEEEEC---CCSHHHHHHHHHHHHHHHH-T-----CEEEEEEC--CSHHHHHHHHHHHTSCCSSCCEEECCSSCCH--
T ss_pred CEEEEEeCCC-CCcHHHHHHHHHHHHHHHc-C-----CEEEEEeC--CCChHHHHHHHHHHHhCCCcEEEEecCCCCH--
Confidence 5799887543 3345667777776543322 2 22333332 22334443 4555554689999998754432
Q ss_pred HHHHHHHHhhCCCeEEeCCCCccCCCCcchhhh-ccchhhhhcccC-CCCCCEEEEEeCCC
Q 017886 297 SHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKL-MHGELVEKENWL-PKGQITIGITSGAS 355 (364)
Q Consensus 297 ~rL~eia~~~~~~t~~Ie~~~eL~~~~~~~~~~-~~~~~~~~~~wl-~~~~~~VGITAGAS 355 (364)
..++.+.+.+.|...+.+..+-+.-..+.... ..|.. --+|| ..|.++||+-+|..
T Consensus 130 -~~~~~l~~~~iPvV~~~~~~~~~~~~~V~~D~~~~~~~--a~~~L~~~G~~~I~~i~~~~ 187 (332)
T 2hsg_A 130 -EHVEELKKSPVPVVLAASIESTNQIPSVTIDYEQAAFD--AVQSLIDSGHKNIAFVSGTL 187 (332)
T ss_dssp -HHHHHHTTSSSCEEEESCCCSCTTSCEEEECHHHHHHH--HHHHHHTTTCSCEEEEESCT
T ss_pred -HHHHHHHhCCCCEEEEccccCCCCCCEEEEChHHHHHH--HHHHHHHCCCCEEEEEeCCc
Confidence 34444556789999898743211101111110 11111 11222 24789999998864
No 74
>3n0w_A ABC branched chain amino acid family transporter, periplasmic ligand binding protein...; receptor family ligand binding region; HET: MSE; 1.88A {Burkholderia xenovorans}
Probab=46.52 E-value=22 Score=32.98 Aligned_cols=57 Identities=11% Similarity=0.136 Sum_probs=42.6
Q ss_pred ccccccccccHHHHHHHHHHHHhhh-hCCCEEEEEcCCCCchhHHHHHHHHhhCCCeEEeC
Q 017886 255 EHFISFNTICDATQERQDAMYKMVE-EKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWID 314 (364)
Q Consensus 255 ~~~~v~nTIC~AT~~RQ~a~~eLa~-~~vD~miVVGGknSSNT~rL~eia~~~~~~t~~Ie 314 (364)
-++.+.|+-|.....++ ++++|.. ..||+ |||...|+.+..+.+++++.+.|.+...
T Consensus 47 i~l~~~D~~~~~~~a~~-~~~~li~~~~v~~--iiG~~~s~~~~a~~~~~~~~~ip~i~~~ 104 (379)
T 3n0w_A 47 VKLVSADYQMKTDVALS-IAREWFDRDGVDA--IFDVVNSGTALAINNLVKDKKKLAFITA 104 (379)
T ss_dssp CEEEEEECTTCHHHHHH-HHHHHHHHSCCCE--EEECCCHHHHHHHHHHHHHHTCEEEECS
T ss_pred EEEEEeCCCCCHHHHHH-HHHHHHHhCCceE--EEcCCCcHHHHHHHHHHHHcCceEEEcC
Confidence 45678899888766655 4455553 45555 5899999999999999999998877653
No 75
>3j21_Z 50S ribosomal protein L30E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=46.46 E-value=57 Score=25.48 Aligned_cols=41 Identities=20% Similarity=0.291 Sum_probs=32.2
Q ss_pred hCCCEEEEEcCCCCchhH-HHHHHHHhhCCCeEEe-CCCCccCC
Q 017886 280 EKVDLILVVGGWNSSNTS-HLQEIAEDRGIPSYWI-DSEKRIGP 321 (364)
Q Consensus 280 ~~vD~miVVGGknSSNT~-rL~eia~~~~~~t~~I-e~~~eL~~ 321 (364)
+++-++|+-.+ -|.|+. +|-..|++.+.|.|.. .|-.||-.
T Consensus 30 gka~lViiA~D-~~~~~~~~i~~~c~~~~ip~~~~~~s~~eLG~ 72 (99)
T 3j21_Z 30 GGAKLIIVAKN-APKEIKDDIYYYAKLSDIPVYEFEGTSVELGT 72 (99)
T ss_dssp TCCSEEEEECC-CCHHHHHHHHHHHHHTTCCEEEECCCSCGGGG
T ss_pred CCccEEEEeCC-CCHHHHHHHHHHHHHcCCCEEEeCCCHHHHHH
Confidence 56777777777 778877 6667899999998766 99998863
No 76
>4evq_A Putative ABC transporter subunit, substrate-bindi component; structural genomics, PSI-biology, midwest center for structu genomics; HET: MSE PHB; 1.40A {Rhodopseudomonas palustris} PDB: 4evr_A
Probab=46.36 E-value=50 Score=30.15 Aligned_cols=95 Identities=20% Similarity=0.298 Sum_probs=57.8
Q ss_pred ceEEEEEcCC-CChHHHHHHHHHHHHHHhhhcc-cccccccccccccccHHHHHHHHHHHHhhh-hCCCEEEEEcCCCCc
Q 017886 218 VKVGIANQTT-MLKGETEEIGKLVEKTMMRKFG-VENVNEHFISFNTICDATQERQDAMYKMVE-EKVDLILVVGGWNSS 294 (364)
Q Consensus 218 ~kv~vvsQTT-~~~~~~~~i~~~l~~~~~~~~~-~~~~~~~~~v~nTIC~AT~~RQ~a~~eLa~-~~vD~miVVGGknSS 294 (364)
-+|+++.-.| ....-+.++..-++..+.+.-+ .....-++.+.|+-|...... +.+++|.. ..+|+ |||...|+
T Consensus 17 i~IG~~~p~sg~~~~~~~~~~~g~~~a~~~~ng~~~g~~~~l~~~d~~~~~~~~~-~~~~~l~~~~~v~~--iig~~~s~ 93 (375)
T 4evq_A 17 LKVGLLLPYSGTYAPLGEAITRGLELYVQSQGGKLGGRSISFVKVDDESAPPKAT-ELTTKLIQSEKADV--LIGTVHSG 93 (375)
T ss_dssp EEEEEEECSSSTTHHHHHHHHHHHHHHHHHTTTEETTEEEEEEEEECTTCHHHHH-HHHHCCCCCSCCSE--EEECSSHH
T ss_pred eEEEEEeCCCCcchhcCHHHHHHHHHHHHHhCCCcCCEEEEEEEecCCCCHHHHH-HHHHHHHhcCCceE--EEcCCccH
Confidence 4788876443 3334445565555543332210 000113566778877765443 45566653 25655 67888889
Q ss_pred hhHHHHHHHHhhCCCeEEeCC
Q 017886 295 NTSHLQEIAEDRGIPSYWIDS 315 (364)
Q Consensus 295 NT~rL~eia~~~~~~t~~Ie~ 315 (364)
.+..+.+++.+.+.|.+....
T Consensus 94 ~~~~~~~~~~~~~iP~v~~~~ 114 (375)
T 4evq_A 94 VAMAMVKIAREDGIPTIVPNA 114 (375)
T ss_dssp HHHHHHHHHHHHCCCEEESSC
T ss_pred HHHHHHHHHHHcCceEEecCC
Confidence 999999999999999876653
No 77
>1x92_A APC5045, phosphoheptose isomerase; midwest centre for structural genomics, SIS domain, A/B protein, lipopolysaccharide biosynthesis, PSI; HET: M7P; 2.30A {Pseudomonas aeruginosa} SCOP: c.80.1.3 PDB: 3bjz_A
Probab=46.20 E-value=1e+02 Score=26.12 Aligned_cols=35 Identities=17% Similarity=0.352 Sum_probs=23.4
Q ss_pred ccCCCEE-EEcCCCCCHHHHHHH---HhcCCcEEeccCc
Q 017886 94 VNKGDVV-VLPAFGAAVEEMVTL---NNKNVQIVDTTCP 128 (364)
Q Consensus 94 l~~g~~V-IIrAHGv~~~v~~~l---~~~g~~iiDaTCP 128 (364)
+.++|.| +|+.-|-++++.+.+ +++|..+|=-|+.
T Consensus 111 ~~~~DvvI~iS~SG~t~~~i~~~~~ak~~g~~vI~IT~~ 149 (199)
T 1x92_A 111 GQPGDVLLAISTSGNSANVIQAIQAAHDREMLVVALTGR 149 (199)
T ss_dssp CCTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEECT
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence 4568864 689999999876554 4556655544544
No 78
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*
Probab=45.77 E-value=1.4e+02 Score=26.88 Aligned_cols=128 Identities=13% Similarity=0.067 Sum_probs=67.5
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHH-HHHHHhhhhCCCEEEEEcCCCCchh
Q 017886 218 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSNT 296 (364)
Q Consensus 218 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ-~a~~eLa~~~vD~miVVGGknSSNT 296 (364)
++|+++..++ +-.-|..+.+-+++...+. + -++.+.+ .......+| +.+..|..+.+|.+||.+. .++..
T Consensus 4 ~~Igvi~~~~-~~~~~~~~~~g~~~~~~~~-g-----~~~~~~~-~~~~d~~~q~~~i~~li~~~vdgiii~~~-~~~~~ 74 (316)
T 1tjy_A 4 ERIAFIPKLV-GVGFFTSGGNGAQEAGKAL-G-----IDVTYDG-PTEPSVSGQVQLVNNFVNQGYDAIIVSAV-SPDGL 74 (316)
T ss_dssp CEEEEECSSS-SSHHHHHHHHHHHHHHHHH-T-----CEEEECC-CSSCCHHHHHHHHHHHHHTTCSEEEECCS-SSSTT
T ss_pred CEEEEEeCCC-CChHHHHHHHHHHHHHHHh-C-----CEEEEEC-CCCCCHHHHHHHHHHHHHcCCCEEEEeCC-CHHHH
Confidence 4788887654 3456777777776543322 2 2233321 012333444 3355555578999887654 33333
Q ss_pred HHHHHHHHhhCCCeEEeCCCCccC-CCCcc-hhhh-ccchhhhhcccCC----CCCCEEEEEeCCCC
Q 017886 297 SHLQEIAEDRGIPSYWIDSEKRIG-PGNKI-AYKL-MHGELVEKENWLP----KGQITIGITSGAST 356 (364)
Q Consensus 297 ~rL~eia~~~~~~t~~Ie~~~eL~-~~~~~-~~~~-~~~~~~~~~~wl~----~~~~~VGITAGAST 356 (364)
....+.+++.+.|...+++.-+-. ...-+ .+.. ..|+. .-++|- .+..+|++-.|..+
T Consensus 75 ~~~~~~a~~~gipvV~~d~~~~~~~~~~~v~~~D~~~~g~~--~~~~L~~~~~~g~~~i~~i~g~~~ 139 (316)
T 1tjy_A 75 CPALKRAMQRGVKILTWDSDTKPECRSYYINQGTPKQLGSM--LVEMAAHQVDKEKAKVAFFYSSPT 139 (316)
T ss_dssp HHHHHHHHHTTCEEEEESSCCCGGGCSEEEESCCHHHHHHH--HHHHHHHHHCSSSEEEEEEESCSS
T ss_pred HHHHHHHHHCcCEEEEecCCCCCCCceEEEecCCHHHHHHH--HHHHHHHHcCCCCCEEEEEEcCCC
Confidence 455667778899998887642211 11111 1111 22222 112221 26889999998654
No 79
>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}
Probab=45.65 E-value=75 Score=27.75 Aligned_cols=92 Identities=13% Similarity=-0.018 Sum_probs=51.9
Q ss_pred ceEEEEEcCCCC-hHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHH-HHHHHhhhhCCCEEEEEcCCCCch
Q 017886 218 VKVGIANQTTML-KGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSN 295 (364)
Q Consensus 218 ~kv~vvsQTT~~-~~~~~~i~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ-~a~~eLa~~~vD~miVVGGknSSN 295 (364)
..|+++....-. -.-|..+.+-+++...+. + -++.+.++--.....+| +.++.|.+..+|.+|+.+... ++
T Consensus 6 ~~Ig~v~~~~~~~~~~~~~~~~gi~~~a~~~-g-----~~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~~-~~ 78 (289)
T 3brs_A 6 YYMICIPKVLDDSSDFWSVLVEGAQMAAKEY-E-----IKLEFMAPEKEEDYLVQNELIEEAIKRKPDVILLAAADY-EK 78 (289)
T ss_dssp CEEEEECSCCCSSSHHHHHHHHHHHHHHHHH-T-----CEEEECCCSSTTCHHHHHHHHHHHHHTCCSEEEECCSCT-TT
T ss_pred cEEEEEeCCCCCCchHHHHHHHHHHHHHHHc-C-----CEEEEecCCCCCCHHHHHHHHHHHHHhCCCEEEEeCCCh-HH
Confidence 478888764320 455677777776543322 2 22333322101233444 345555557899999887543 33
Q ss_pred hHHHHHHHHhhCCCeEEeCCC
Q 017886 296 TSHLQEIAEDRGIPSYWIDSE 316 (364)
Q Consensus 296 T~rL~eia~~~~~~t~~Ie~~ 316 (364)
....++.+.+.+.|...+.+.
T Consensus 79 ~~~~~~~~~~~~iPvV~~~~~ 99 (289)
T 3brs_A 79 TYDAAKEIKDAGIKLIVIDSG 99 (289)
T ss_dssp THHHHTTTGGGTCEEEEESSC
T ss_pred hHHHHHHHHHCCCcEEEECCC
Confidence 334455556778999888864
No 80
>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1
Probab=45.56 E-value=21 Score=29.15 Aligned_cols=45 Identities=16% Similarity=0.261 Sum_probs=33.8
Q ss_pred HHhhhhCCCEEEEEcCCCCchhH---HHHHHHHhhCCCeEEeCC--CCccCC
Q 017886 275 YKMVEEKVDLILVVGGWNSSNTS---HLQEIAEDRGIPSYWIDS--EKRIGP 321 (364)
Q Consensus 275 ~eLa~~~vD~miVVGGknSSNT~---rL~eia~~~~~~t~~Ie~--~~eL~~ 321 (364)
..| ..+|++||+-|.+|+|+. .-.+.|++.|+|.+-|.- .++++.
T Consensus 34 ~~I--~~~~~vIvL~G~~t~~s~wv~~EI~~A~~~gkpIigV~~~g~~~~P~ 83 (111)
T 1eiw_A 34 ATP--EDADAVIVLAGLWGTRRDEILGAVDLARKSSKPIITVRPYGLENVPP 83 (111)
T ss_dssp CCS--SSCSEEEEEGGGTTTSHHHHHHHHHHHTTTTCCEEEECCSSSSCCCT
T ss_pred Ccc--ccCCEEEEEeCCCcCCChHHHHHHHHHHHcCCCEEEEEcCCCCcCCH
Confidence 556 379999999999998876 666788889999765544 445544
No 81
>3hcn_A Ferrochelatase, mitochondrial; metal selectivity, disease mutation, heme biosynthesis, iron, iron-sulfur, lyase, membrane, metal-BIN mitochondrion; HET: CHD HEM GOL; 1.60A {Homo sapiens} SCOP: c.92.1.1 PDB: 2qd3_A* 2qd5_A* 2qd4_A* 3hco_A* 3hcr_A* 2qd1_A* 2hre_A* 3hcp_A* 2qd2_A* 2hrc_A* 1hrk_A* 4f4d_A* 3aqi_A* 2pnj_A* 2po5_A* 2po7_A*
Probab=45.48 E-value=1.7e+02 Score=28.50 Aligned_cols=91 Identities=13% Similarity=0.173 Sum_probs=55.8
Q ss_pred cccHHHHHHHHHHHHhhCC---CCceEEecccccCHHHHHHHHHcCcEEecCCccccccc-cccCCCEEEEcCCCCCHHH
Q 017886 36 CWGVERAVQIAYEARKQFP---EEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFD-VVNKGDVVVLPAFGAAVEE 111 (364)
Q Consensus 36 C~GV~RAi~~a~~~~~~~~---~~~vy~lG~iIHN~~Vv~~L~~~Gv~~v~~~~~~~~~~-~l~~g~~VIIrAHGv~~~v 111 (364)
|..+.-+++.+.+++++.. .-++-+.-..=-+|.-++.|.+.=-..++. +. +..+...+||+|||+|...
T Consensus 132 ~~Ttgs~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~yI~a~a~~I~~~l~~------~~~~~~~~~~LlfSaHgiP~~~ 205 (359)
T 3hcn_A 132 CSTTGSSLNAIYRYYNQVGRKPTMKWSTIDRWPTHHLLIQCFADHILKELDH------FPLEKRSEVVILFSAHSLPMSV 205 (359)
T ss_dssp TTTHHHHHHHHHHHHHHTTCCCSSEEEEECCCTTCHHHHHHHHHHHHHHHTT------SCTTTGGGCEEEEEEECCBHHH
T ss_pred ccchhhHHHHHHHHHHHhccCCCCceEEeCCccCCHHHHHHHHHHHHHHHHh------CCccccCCcEEEEEcCCChHhh
Confidence 4455666676666655421 113566666667777777776552222221 11 1112347999999999986
Q ss_pred HHHHHhcCCcEEeccCchhHHHHHHHHHHhhC
Q 017886 112 MVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKG 143 (364)
Q Consensus 112 ~~~l~~~g~~iiDaTCP~V~kv~~~v~~~~~~ 143 (364)
. ++| -|+...+++.++.+.+.
T Consensus 206 ~----~~G-------DpY~~q~~~t~~lv~e~ 226 (359)
T 3hcn_A 206 V----NRG-------DPYPQEVSATVQKVMER 226 (359)
T ss_dssp H----TTT-------CSHHHHHHHHHHHHHHH
T ss_pred c----ccC-------CCHHHHHHHHHHHHHHH
Confidence 5 345 48989998888877664
No 82
>2fqx_A Membrane lipoprotein TMPC; ABC transport system, ligand-binding protein, guanosine, TP0319, transport protein; HET: GMP; 1.70A {Treponema pallidum} PDB: 2fqw_A* 2fqy_A*
Probab=45.15 E-value=84 Score=28.85 Aligned_cols=130 Identities=10% Similarity=0.074 Sum_probs=67.3
Q ss_pred ceEEEEEc-CCCCh-HHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHHHHHHHhhhhCCCEEEEEcCCCCch
Q 017886 218 VKVGIANQ-TTMLK-GETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSN 295 (364)
Q Consensus 218 ~kv~vvsQ-TT~~~-~~~~~i~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ~a~~eLa~~~vD~miVVGGknSSN 295 (364)
.+|+++.. ..+.- .-|..+.+-+.+. .+.++ -++.+.++- .. .+..+.++.|++..+|.+|++|...+
T Consensus 5 ~~Ig~v~~~g~~~d~~f~~~~~~Gi~~~-~~~~g-----~~~~~~~~~-~~-~~~~~~l~~l~~~~~dgIi~~~~~~~-- 74 (318)
T 2fqx_A 5 FVVGMVTDSGDIDDKSFNQQVWEGISRF-AQENN-----AKCKYVTAS-TD-AEYVPSLSAFADENMGLVVACGSFLV-- 74 (318)
T ss_dssp CEEEEEESSSCTTSSSHHHHHHHHHHHH-HHHTT-----CEEEEEECC-SG-GGHHHHHHHHHHTTCSEEEEESTTTH--
T ss_pred cEEEEEEcCCCCCCccHHHHHHHHHHHH-HHHhC-----CeEEEEeCC-CH-HHHHHHHHHHHHcCCCEEEECChhHH--
Confidence 47999885 23332 4466666666542 22222 223333331 22 23445678887678999999985433
Q ss_pred hHHHHHHHHhh-CCCeEEeCCCCc-cCCCCcchhhhccc-hh-hhhcccC-CCCC-CEEEEEeCCCCCH
Q 017886 296 TSHLQEIAEDR-GIPSYWIDSEKR-IGPGNKIAYKLMHG-EL-VEKENWL-PKGQ-ITIGITSGASTPD 358 (364)
Q Consensus 296 T~rL~eia~~~-~~~t~~Ie~~~e-L~~~~~~~~~~~~~-~~-~~~~~wl-~~~~-~~VGITAGASTP~ 358 (364)
..+.+++++. +.|..+|++..+ .+.-..+.+....+ .+ +.-...| ..|. ++||..+|-..|.
T Consensus 75 -~~~~~~a~~~p~~p~v~id~~~~~~~~~~~v~~d~~~~~~lag~~a~~l~~~Gh~r~Ig~i~g~~~~~ 142 (318)
T 2fqx_A 75 -EAVIETSARFPKQKFLVIDAVVQDRDNVVSAVFGQNEGSFLVGVAAALKAKEAGKSAVGFIVGMELGM 142 (318)
T ss_dssp -HHHHHHHHHCTTSCEEEESSCCCSCTTEEEEEECHHHHHHHHHHHHHHHHHHTTCCEEEEEESCCSTT
T ss_pred -HHHHHHHHHCCCCEEEEEcCccCCCCCEEEEEechHHHHHHHHHHHHHHhccCCCcEEEEEeCcccHH
Confidence 2366677654 678888987533 22101122211111 11 1001122 1254 7999999876553
No 83
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=44.51 E-value=1.5e+02 Score=26.22 Aligned_cols=126 Identities=10% Similarity=0.065 Sum_probs=67.8
Q ss_pred ceEEEEEc----CCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHHHHH-HHhhhhCCCEEEEEcCCC
Q 017886 218 VKVGIANQ----TTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAM-YKMVEEKVDLILVVGGWN 292 (364)
Q Consensus 218 ~kv~vvsQ----TT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ~a~-~eLa~~~vD~miVVGGkn 292 (364)
..|+++.- ..++-.-|.++++-+.+...+. +-++.++++- ...++|..+ +.|.+..+|.+|+.+...
T Consensus 8 ~~Igvi~~~~~~~~~~~~f~~~~~~gi~~~a~~~------g~~~~~~~~~--~~~~~~~~~~~~l~~~~vdGiI~~~~~~ 79 (295)
T 3hcw_A 8 YKIGLVLKGSEEPIRLNPFYINVLLGISETCNQH------GYGTQTTVSN--NMNDLMDEVYKMIKQRMVDAFILLYSKE 79 (295)
T ss_dssp CEEEEECSCCCHHHHSCHHHHHHHHHHHHHHHTT------TCEEEECCCC--SHHHHHHHHHHHHHTTCCSEEEESCCCT
T ss_pred cEEEEEeecCCcccccChHHHHHHHHHHHHHHHC------CCEEEEEcCC--CChHHHHHHHHHHHhCCcCEEEEcCccc
Confidence 57888862 2234455777777776643322 2234444432 233455444 344446899999987654
Q ss_pred CchhHHHHHHHHhhCCCeEEeCCCCccC--CCCcchhh-hccchhhhhcccC-CCCCCEEEEEeCCCC
Q 017886 293 SSNTSHLQEIAEDRGIPSYWIDSEKRIG--PGNKIAYK-LMHGELVEKENWL-PKGQITIGITSGAST 356 (364)
Q Consensus 293 SSNT~rL~eia~~~~~~t~~Ie~~~eL~--~~~~~~~~-~~~~~~~~~~~wl-~~~~~~VGITAGAST 356 (364)
+. .+.+.+++.+.|...+++..+-. ....+... ...|..- -++| ..|.++||+-.|...
T Consensus 80 ~~---~~~~~l~~~~iPvV~i~~~~~~~~~~~~~V~~D~~~~~~~a--~~~L~~~G~~~I~~i~~~~~ 142 (295)
T 3hcw_A 80 ND---PIKQMLIDESMPFIVIGKPTSDIDHQFTHIDNDNILASENL--TRHVIEQGVDELIFITEKGN 142 (295)
T ss_dssp TC---HHHHHHHHTTCCEEEESCCCSSGGGGSCEEEECHHHHHHHH--HHHHHHHCCSEEEEEEESSC
T ss_pred Ch---HHHHHHHhCCCCEEEECCCCccccCCceEEecCcHHHHHHH--HHHHHHcCCccEEEEcCCcc
Confidence 32 45566667889999998753221 10011100 0111111 1222 137899999988644
No 84
>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}
Probab=44.07 E-value=59 Score=30.17 Aligned_cols=94 Identities=9% Similarity=-0.077 Sum_probs=58.0
Q ss_pred HHHHHHhhCCCCceEEecccccCHHHHHHHHHcCcEEecCCccccccccccCCCEEEEcCCCCCHHHHHH-------HHh
Q 017886 45 IAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVT-------LNN 117 (364)
Q Consensus 45 ~a~~~~~~~~~~~vy~lG~iIHN~~Vv~~L~~~Gv~~v~~~~~~~~~~~l~~g~~VIIrAHGv~~~v~~~-------l~~ 117 (364)
+|...++. +-+|+.+- -|+..++.|.+.|+...+++ .++-..+-|||..=.-++.+.+. ...
T Consensus 20 mA~~L~~~--G~~V~v~d---r~~~~~~~l~~~G~~~~~s~------~e~~~~~dvvi~~l~~~~~~~~v~~~~~~~~~~ 88 (297)
T 4gbj_A 20 IAEILLEA--GYELVVWN---RTASKAEPLTKLGATVVENA------IDAITPGGIVFSVLADDAAVEELFSMELVEKLG 88 (297)
T ss_dssp HHHHHHHT--TCEEEEC----------CTTTTTTCEECSSG------GGGCCTTCEEEECCSSHHHHHHHSCHHHHHHHC
T ss_pred HHHHHHHC--CCeEEEEe---CCHHHHHHHHHcCCeEeCCH------HHHHhcCCceeeeccchhhHHHHHHHHHHhhcC
Confidence 55555654 23576653 36778899999999998753 44434434556555444444332 234
Q ss_pred cCCcEEeccCchhHHHHHHHHHHhhCCCeEEE
Q 017886 118 KNVQIVDTTCPWVSKVWTSVEKHKKGDYTSII 149 (364)
Q Consensus 118 ~g~~iiDaTCP~V~kv~~~v~~~~~~Gy~iII 149 (364)
+|-.+||.+=-.....++.++.+.++|...+=
T Consensus 89 ~~~iiid~sT~~p~~~~~~~~~~~~~g~~~ld 120 (297)
T 4gbj_A 89 KDGVHVSMSTISPETSRQLAQVHEWYGAHYVG 120 (297)
T ss_dssp TTCEEEECSCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred CCeEEEECCCCChHHHHHHHHHHHhcCCceec
Confidence 67788998887888888899999898876553
No 85
>3i09_A Periplasmic branched-chain amino acid-binding Pro; type I periplasmic binding protein, structural genomics, JOI for structural genomics; HET: MSE CIT; 1.80A {Burkholderia mallei}
Probab=43.96 E-value=19 Score=33.31 Aligned_cols=58 Identities=17% Similarity=0.178 Sum_probs=43.4
Q ss_pred ccccccccccHHHHHHHHHHHHhhhhCCCEEEEEcCCCCchhHHHHHHHHhhCCCeEEeC
Q 017886 255 EHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWID 314 (364)
Q Consensus 255 ~~~~v~nTIC~AT~~RQ~a~~eLa~~~vD~miVVGGknSSNT~rL~eia~~~~~~t~~Ie 314 (364)
-++.+.|+-|.....++ ++++|.. +-.+..|||...|+.+..+.+++.+.+.|.+...
T Consensus 45 i~l~~~D~~~~~~~a~~-~~~~li~-~~~v~~iiG~~~s~~~~a~~~~~~~~~ip~i~~~ 102 (375)
T 3i09_A 45 IEVVYADHQNKADIAAS-KAREWMD-RGGLDLLVGGTNSATALSMNQVAAEKKKVYINIG 102 (375)
T ss_dssp EEEEEEECTTCHHHHHH-HHHHHHH-HSCEEEEEECSCHHHHHHHHHHHHHHTCEEEECS
T ss_pred EEEEEecCCCCHHHHHH-HHHHHHh-hCCCEEEECCCCcHHHHHHHHHHHHcCceEEEeC
Confidence 35678899887766654 4555653 2356667899999999999999999998877663
No 86
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=43.35 E-value=1.7e+02 Score=25.64 Aligned_cols=89 Identities=11% Similarity=0.184 Sum_probs=51.8
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccc-cccccccccHHHHHHHH-HHHHhhhhCCCEEEEEcCCCCch
Q 017886 218 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNE-HFISFNTICDATQERQD-AMYKMVEEKVDLILVVGGWNSSN 295 (364)
Q Consensus 218 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~-~~~v~nTIC~AT~~RQ~-a~~eLa~~~vD~miVVGGknSSN 295 (364)
..|+++.... +-.-|..+.+-+.+...+. +- ++.++++ .....+|. .++.|.+..+|.+|+.+...+ .
T Consensus 3 ~~Igvi~~~~-~~~~~~~~~~gi~~~a~~~------g~~~~~~~~~--~~~~~~~~~~~~~~~~~~vdgiii~~~~~~-~ 72 (309)
T 2fvy_A 3 TRIGVTIYKY-DDNFMSVVRKAIEQDAKAA------PDVQLLMNDS--QNDQSKQNDQIDVLLAKGVKALAINLVDPA-A 72 (309)
T ss_dssp EEEEEEESCT-TSHHHHHHHHHHHHHHHTC------TTEEEEEEEC--TTCHHHHHHHHHHHHHTTCSEEEECCSSGG-G
T ss_pred cEEEEEeccC-CcHHHHHHHHHHHHHHHhc------CCeEEEEecC--CCCHHHHHHHHHHHHHcCCCEEEEeCCCcc-h
Confidence 4788887653 3455777777776542222 11 3333332 22234443 345555568999998764332 2
Q ss_pred hHHHHHHHHhhCCCeEEeCCC
Q 017886 296 TSHLQEIAEDRGIPSYWIDSE 316 (364)
Q Consensus 296 T~rL~eia~~~~~~t~~Ie~~ 316 (364)
....++.+++.+.|...+.+.
T Consensus 73 ~~~~~~~~~~~~iPvV~~~~~ 93 (309)
T 2fvy_A 73 AGTVIEKARGQNVPVVFFNKE 93 (309)
T ss_dssp HHHHHHHHHTTTCCEEEESSC
T ss_pred hHHHHHHHHHCCCcEEEecCC
Confidence 344556666788999999875
No 87
>3qek_A NMDA glutamate receptor subunit; amino terminal domain, ION channel, NMDA receptor, allosteri modulation, phenylethanolamine, polyamine; HET: NAG BMA; 2.00A {Xenopus laevis} PDB: 3qel_A* 3qem_A* 3q41_A*
Probab=43.34 E-value=77 Score=29.35 Aligned_cols=56 Identities=11% Similarity=0.029 Sum_probs=41.2
Q ss_pred cccccccccHHHHHHHHHHHHhhhhCCCEEEEEcC-----CCCchhHHHHHHHHhhCCCeEEe
Q 017886 256 HFISFNTICDATQERQDAMYKMVEEKVDLILVVGG-----WNSSNTSHLQEIAEDRGIPSYWI 313 (364)
Q Consensus 256 ~~~v~nTIC~AT~~RQ~a~~eLa~~~vD~miVVGG-----knSSNT~rL~eia~~~~~~t~~I 313 (364)
++...|+-|++.+-.+.++++|. .+ .+..|||+ ..|+.+.....++...+.|..--
T Consensus 40 ~~~~~d~~~d~~~a~~~~~~~Li-~~-~V~aiiG~~~~~~~~s~~~~a~~~~~~~~~iP~is~ 100 (384)
T 3qek_A 40 QATSVTHRPNAIQMALSVCEDLI-SS-QVYAILVSHPPAPTDHLTPTPISYTAGFYRIPVIGL 100 (384)
T ss_dssp EEEEEECCSSHHHHHHHHHHHTG-GG-TEEEEEECC--------CCHHHHHHHHTTTCCEEES
T ss_pred EEEEecccCCHHHHHHHHHHHHH-Hc-CceEEEEecCCCCccchhHHHHHHHHhcCCCCEEec
Confidence 34567889998888888888887 45 78899995 45566778889999998886543
No 88
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=43.20 E-value=1.6e+02 Score=25.34 Aligned_cols=125 Identities=11% Similarity=0.167 Sum_probs=66.6
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHHH-HHHHhhhhCCCEEEEEcCCCCchh
Q 017886 218 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQD-AMYKMVEEKVDLILVVGGWNSSNT 296 (364)
Q Consensus 218 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ~-a~~eLa~~~vD~miVVGGknSSNT 296 (364)
..|+++... ++-.-|.++.+-+.+...+. + -++.++++ ....++|. .+..|....+|.+|+.+...+
T Consensus 4 ~~Ig~i~~~-~~~~~~~~~~~gi~~~~~~~-g-----~~~~~~~~--~~~~~~~~~~~~~l~~~~vdgii~~~~~~~--- 71 (275)
T 3d8u_A 4 YSIALIIPS-LFEKACAHFLPSFQQALNKA-G-----YQLLLGYS--DYSIEQEEKLLSTFLESRPAGVVLFGSEHS--- 71 (275)
T ss_dssp CEEEEEESC-SSCHHHHHHHHHHHHHHHHT-S-----CEECCEEC--TTCHHHHHHHHHHHHTSCCCCEEEESSCCC---
T ss_pred eEEEEEeCC-CccccHHHHHHHHHHHHHHC-C-----CEEEEEcC--CCCHHHHHHHHHHHHhcCCCEEEEeCCCCC---
Confidence 478888765 34456677777776643322 2 22333322 22334443 345555568999999876433
Q ss_pred HHHHHHHHhhCCCeEEeCCCCccCCCCcchhhh-ccchhhhhcccC-CCCCCEEEEEeCCCC
Q 017886 297 SHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKL-MHGELVEKENWL-PKGQITIGITSGAST 356 (364)
Q Consensus 297 ~rL~eia~~~~~~t~~Ie~~~eL~~~~~~~~~~-~~~~~~~~~~wl-~~~~~~VGITAGAST 356 (364)
..+++.+++.+.|...+++..+-+.-..+.... ..|.. .-+|| ..|.++||+-+|...
T Consensus 72 ~~~~~~l~~~~iPvV~~~~~~~~~~~~~V~~d~~~~~~~--a~~~L~~~G~~~i~~i~~~~~ 131 (275)
T 3d8u_A 72 QRTHQLLEASNTPVLEIAELSSKASYLNIGVDHFEVGKA--CTRHLIEQGFKNVGFIGARGN 131 (275)
T ss_dssp HHHHHHHHHHTCCEEEESSSCSSSSSEEECBCHHHHHHH--HHHHHHTTTCCCEEEEECSCS
T ss_pred HHHHHHHHhCCCCEEEEeeccCCCCCCEEEEChHHHHHH--HHHHHHHCCCCeEEEEcCCCC
Confidence 244555667889999997643211100011100 11111 11233 237889999988643
No 89
>3cl6_A PUUE allantoinase; URIC acid, nitrogen fixation, hydrolase; 1.58A {Pseudomonas fluorescens} PDB: 3cl7_A 3cl8_A 1z7a_A
Probab=43.00 E-value=30 Score=32.24 Aligned_cols=84 Identities=10% Similarity=0.058 Sum_probs=53.4
Q ss_pred CcccHHHHHHHHHHHHhhCC-CCceEEecccc-cCHHHHHHHHHcCcEEecC----Cc--cc-------------ccccc
Q 017886 35 FCWGVERAVQIAYEARKQFP-EEKIWITNEII-HNPTVNKRLEEMAVQNIPV----EE--GK-------------KQFDV 93 (364)
Q Consensus 35 FC~GV~RAi~~a~~~~~~~~-~~~vy~lG~iI-HN~~Vv~~L~~~Gv~~v~~----~~--~~-------------~~~~~ 93 (364)
|-.|-+.....+.+++++++ ..-.|+.|..+ .||.+++++.+.|-.+-.. .. .. +.+.+
T Consensus 75 fDdG~~~~~~~ll~iL~~~~v~aTfFv~g~~~~~~p~~v~~i~~~GheIg~Ht~~H~~~~~~s~~~~~~ei~~~~~~l~~ 154 (308)
T 3cl6_A 75 YEYGSRAGVWRILKLFKAFDIPLTIFAVAMAAQRHPDVIRAMVAAGHEICSHGYRWIDYQYMDEAQEREHMLEAIRILTE 154 (308)
T ss_dssp HHHHHHTHHHHHHHHHHHTTCCCEEEECHHHHHHCHHHHHHHHHTTCEEEECCSSSSCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred EecCchhhHHHHHHHHHHcCCCEEEEeEHHHHHHCHHHHHHHHHcCCEEEeCCCCCcccccCCHHHHHHHHHHHHHHHHH
Confidence 34455555556666666653 34688998865 7999999999999766442 10 00 01122
Q ss_pred ccCCC-EEEEcCCCCCHHHHHHHHhcC
Q 017886 94 VNKGD-VVVLPAFGAAVEEMVTLNNKN 119 (364)
Q Consensus 94 l~~g~-~VIIrAHGv~~~v~~~l~~~g 119 (364)
+. |. ...+|+-..++.+.+.|++.|
T Consensus 155 ~~-G~~p~g~r~~~~~~~~~~~l~~~G 180 (308)
T 3cl6_A 155 LT-GERPLGWYTGRTGPNTRRLVMEEG 180 (308)
T ss_dssp HH-SSCCSEECCSSCCTTHHHHHHHHC
T ss_pred Hh-CCCcceEECCCCCHHHHHHHHHCC
Confidence 21 32 245777666788999999988
No 90
>3hno_A Pyrophosphate-dependent phosphofructokinase; structural genomics, PSI-2, protein structure initiative; 2.00A {Nitrosospira multiformis atcc 25196} PDB: 3k2q_A
Probab=42.23 E-value=15 Score=36.82 Aligned_cols=52 Identities=15% Similarity=0.294 Sum_probs=36.5
Q ss_pred HHHHHHHHHhhhhCCCEEEEEcCCCCchh-HHHHHHHHhhC--CCeEEeCCCCccCC
Q 017886 268 QERQDAMYKMVEEKVDLILVVGGWNSSNT-SHLQEIAEDRG--IPSYWIDSEKRIGP 321 (364)
Q Consensus 268 ~~RQ~a~~eLa~~~vD~miVVGGknSSNT-~rL~eia~~~~--~~t~~Ie~~~eL~~ 321 (364)
..|+++++.|-...+|++|+|||-.|-.+ .+|.+.+++.| .+...| +.-||.
T Consensus 91 ~~~~~~~~~l~~~~Id~Lv~IGGdgS~~~A~~L~~~~~~~g~~i~vIGi--PkTIDN 145 (419)
T 3hno_A 91 REYERLIEVFKAHDIGYFFYNGGGDSADTCLKVSQLSGTLGYPIQAIHV--PKTVDN 145 (419)
T ss_dssp HHHHHHHHHHHHTTEEEEEEEESHHHHHHHHHHHHHHHHTTCCCEEEEE--ECCTTC
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHHhCCCccEEEe--cccccC
Confidence 46667777776567999999999888655 58888887766 444444 444443
No 91
>1t1j_A Hypothetical protein; structural genomics, PSI, protein structure initiative, MIDW center for structural genomics, MCSG; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.14.2
Probab=42.10 E-value=16 Score=30.61 Aligned_cols=39 Identities=15% Similarity=0.157 Sum_probs=32.6
Q ss_pred HHhhhhCCCEEEEE---cCCCCchhHHHHHHHHhhCCCeEEeC
Q 017886 275 YKMVEEKVDLILVV---GGWNSSNTSHLQEIAEDRGIPSYWID 314 (364)
Q Consensus 275 ~eLa~~~vD~miVV---GGknSSNT~rL~eia~~~~~~t~~Ie 314 (364)
..|. .+||.|+|. |...|.=-+.=+++|++.|.|.++..
T Consensus 77 ~~lL-~~CdevwV~~L~Gw~~S~Gm~~Ei~~A~~~g~pV~~~~ 118 (125)
T 1t1j_A 77 AFYM-DHLEELIVLDLPGWRDSAGIRREMEFFEAGGQRVSLWS 118 (125)
T ss_dssp HHHH-HHCSEEEECCCTTGGGCHHHHHHHHHHHHTTCEEEEHH
T ss_pred HHHH-HhCCeeEEEecCCCCCChhHHHHHHHHHHCCCcEEEEc
Confidence 4465 579999988 88889999999999999999987543
No 92
>3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406}
Probab=42.04 E-value=36 Score=27.94 Aligned_cols=31 Identities=19% Similarity=0.177 Sum_probs=21.0
Q ss_pred EEEcCCCCCHHHHHHHHhcCCcEEeccCchhH
Q 017886 100 VVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVS 131 (364)
Q Consensus 100 VIIrAHGv~~~v~~~l~~~g~~iiDaTCP~V~ 131 (364)
|++.+--..++..+.+++.|++++. -|..|.
T Consensus 86 v~~~~G~~~~e~~~~a~~~Girvv~-nC~gv~ 116 (122)
T 3ff4_A 86 VIFNPGTENEELEEILSENGIEPVI-GCTLVM 116 (122)
T ss_dssp EEECTTCCCHHHHHHHHHTTCEEEE-SCHHHH
T ss_pred EEECCCCChHHHHHHHHHcCCeEEC-CcCeEE
Confidence 3344333467788888888888886 787664
No 93
>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli}
Probab=41.64 E-value=1.9e+02 Score=25.63 Aligned_cols=89 Identities=19% Similarity=0.259 Sum_probs=51.1
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHH-HHHHHhhhhCCCEEEEEcCCCCchh
Q 017886 218 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSNT 296 (364)
Q Consensus 218 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ-~a~~eLa~~~vD~miVVGGknSSNT 296 (364)
.+|+++..++ +..-|..+.+-+++...+. + -++.++++ .....+| +.++.|.+..+|.+|+.+...++ .
T Consensus 3 ~~Ig~i~~~~-~~~~~~~~~~gi~~~a~~~-g-----~~l~~~~~--~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~-~ 72 (306)
T 2vk2_A 3 LTVGFSQVGS-ESGWRAAETNVAKSEAEKR-G-----ITLKIADG--QQKQENQIKAVRSFVAQGVDAIFIAPVVATG-W 72 (306)
T ss_dssp CEEEEEECCC-CSHHHHHHHHHHHHHHHHH-T-----CEEEEEEC--TTCHHHHHHHHHHHHHHTCSEEEECCSSSSS-C
T ss_pred eEEEEEeCCC-CCHHHHHHHHHHHHHHHHc-C-----CEEEEeCC--CCCHHHHHHHHHHHHHcCCCEEEEeCCChhh-H
Confidence 3788888764 3344566666665533222 2 23444332 2223444 34455545689999988754332 2
Q ss_pred HHHHHHHHhhCCCeEEeCCC
Q 017886 297 SHLQEIAEDRGIPSYWIDSE 316 (364)
Q Consensus 297 ~rL~eia~~~~~~t~~Ie~~ 316 (364)
..+.+.+.+.+.|...+.+.
T Consensus 73 ~~~~~~~~~~~iPvV~~~~~ 92 (306)
T 2vk2_A 73 EPVLKEAKDAEIPVFLLDRS 92 (306)
T ss_dssp HHHHHHHHHTTCCEEEESSC
T ss_pred HHHHHHHHHCCCCEEEecCC
Confidence 34455566788999988864
No 94
>4f11_A Gamma-aminobutyric acid type B receptor subunit 2; venus flytrap module, G-protein coupled receptor, signaling; 2.38A {Homo sapiens} PDB: 4f12_A*
Probab=41.31 E-value=13 Score=35.29 Aligned_cols=58 Identities=17% Similarity=0.184 Sum_probs=42.7
Q ss_pred ccccccccccHHHHHHHHHHHHhhhhCCCEEEEEcCCCCchhHHHHHHHHhhCCCeEEe
Q 017886 255 EHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWI 313 (364)
Q Consensus 255 ~~~~v~nTIC~AT~~RQ~a~~eLa~~~vD~miVVGGknSSNT~rL~eia~~~~~~t~~I 313 (364)
-++.+.|+-|....-.+.+.+-+. ..-.+..|||+..|+.+.-.+.++...+.|.+--
T Consensus 58 l~l~~~D~~~~~~~a~~~a~~li~-~~~~v~aviG~~~S~~~~a~~~~~~~~~ip~is~ 115 (433)
T 4f11_A 58 LDLRLYDTECDNAKGLKAFYDAIK-YGPNHLMVFGGVCPSVTSIIAESLQGWNLVQLSF 115 (433)
T ss_dssp EEEEEEECTTCHHHHHHHHHHHHH-HSCCCSEEEECCSHHHHHHHHHTHHHHTCEEEES
T ss_pred EEEEEecCCCCHHHHHHHHHHHHh-cCCceEEEECCCcchHHHHHHHHHHhcCceEEEc
Confidence 456788999988766555544443 3224557889999999999999999998876543
No 95
>3s99_A Basic membrane lipoprotein; ssgcid, structural genomics, SEA structural genomics center for infectious disease, adenine; HET: ADE; 2.05A {Brucella melitensis biovar abortus}
Probab=40.88 E-value=78 Score=30.34 Aligned_cols=132 Identities=10% Similarity=0.063 Sum_probs=67.2
Q ss_pred ceEEEEEcCCCCh-HHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHHHHHHHhhhhCCCEEEEEcCCCCchh
Q 017886 218 VKVGIANQTTMLK-GETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNT 296 (364)
Q Consensus 218 ~kv~vvsQTT~~~-~~~~~i~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ~a~~eLa~~~vD~miVVGGknSSNT 296 (364)
.+|++|.-.+..- .-+..+.+-+++ +.+.++.. -++.+.++ .....+.++.++.|+++.+|++|..|.. -.
T Consensus 27 ~kIglv~~g~i~D~~f~~~~~~G~~~-~~~~~G~~---~~~~~~e~-~~~~~d~~~~l~~l~~~g~d~Ii~~g~~---~~ 98 (356)
T 3s99_A 27 LKVGFIYIGPPGDFGWTYQHDQARKE-LVEALGDK---VETTFLEN-VAEGADAERSIKRIARAGNKLIFTTSFG---YM 98 (356)
T ss_dssp EEEEEECSSCGGGSSHHHHHHHHHHH-HHHHHTTT---EEEEEECS-CCTTHHHHHHHHHHHHTTCSEEEECSGG---GH
T ss_pred CEEEEEEccCCCchhHHHHHHHHHHH-HHHHhCCc---eEEEEEec-CCCHHHHHHHHHHHHHCCCCEEEECCHH---HH
Confidence 4899998544432 233334444433 23333210 11222221 1223466788999987789988877643 34
Q ss_pred HHHHHHHHhh-CCCeEEeCCCCccCCCCcchhhhccc-hh-hhhcccCCCCCCEEEEEeCCCCCH
Q 017886 297 SHLQEIAEDR-GIPSYWIDSEKRIGPGNKIAYKLMHG-EL-VEKENWLPKGQITIGITSGASTPD 358 (364)
Q Consensus 297 ~rL~eia~~~-~~~t~~Ie~~~eL~~~~~~~~~~~~~-~~-~~~~~wl~~~~~~VGITAGASTP~ 358 (364)
..+.++|+++ ..+-.+|++..+.+.-..+.|+...+ -+ +.-...+ ...++||..+|--.|.
T Consensus 99 ~~~~~vA~~~Pdv~fv~id~~~~~~Nv~sv~~~~~eg~ylaG~~A~~~-tk~~kIGfVgg~~~p~ 162 (356)
T 3s99_A 99 DPTVKVAKKFPDVKFEHATGYKTADNMSAYNARFYEGRYVQGVIAAKM-SKKGIAGYIGSVPVPE 162 (356)
T ss_dssp HHHHHHHTTCTTSEEEEESCCCCBTTEEEEEECHHHHHHHHHHHHHHH-CSSCEEEEEECCCCHH
T ss_pred HHHHHHHHHCCCCEEEEEeccccCCcEEEEEechhHHHHHHHHHHHHh-cCCCEEEEECCCccHH
Confidence 5677888775 34556676644322211121211111 11 1111123 3468999999976665
No 96
>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}
Probab=40.80 E-value=94 Score=28.09 Aligned_cols=103 Identities=8% Similarity=-0.054 Sum_probs=59.0
Q ss_pred cchHHHHHHHcCCcccccceEEEEeCCCCCcccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHHc-CcEEecC
Q 017886 6 TSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEM-AVQNIPV 84 (364)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~mkI~lA~~~GFC~GV~RAi~~a~~~~~~~~~~~vy~lG~iIHN~~Vv~~L~~~-Gv~~v~~ 84 (364)
.|+-|+-++--|..+.+.+++|++. .|-+-|...+...++. +..|.+..|=++ +. ++.|.+. ++..+..
T Consensus 13 ~~~~~~~~~~~Pifl~L~gk~VLVV------GgG~va~~ka~~Ll~~--GA~VtVvap~~~-~~-l~~l~~~~~i~~i~~ 82 (223)
T 3dfz_A 13 SSGHIEGRHMYTVMLDLKGRSVLVV------GGGTIATRRIKGFLQE--GAAITVVAPTVS-AE-INEWEAKGQLRVKRK 82 (223)
T ss_dssp ---------CCEEEECCTTCCEEEE------CCSHHHHHHHHHHGGG--CCCEEEECSSCC-HH-HHHHHHTTSCEEECS
T ss_pred ccCcccccCccccEEEcCCCEEEEE------CCCHHHHHHHHHHHHC--CCEEEEECCCCC-HH-HHHHHHcCCcEEEEC
Confidence 4566777777677777889999988 4447788888888876 346888877544 43 4555544 5777754
Q ss_pred CccccccccccCCCEEEEcCCCCCHH---HHHHHHhcCCcEE
Q 017886 85 EEGKKQFDVVNKGDVVVLPAFGAAVE---EMVTLNNKNVQIV 123 (364)
Q Consensus 85 ~~~~~~~~~l~~g~~VIIrAHGv~~~---v~~~l~~~g~~ii 123 (364)
.- ..+++. |..+||-|-|.+.- +.+.++ +|+.|-
T Consensus 83 ~~---~~~dL~-~adLVIaAT~d~~~N~~I~~~ak-~gi~VN 119 (223)
T 3dfz_A 83 KV---GEEDLL-NVFFIVVATNDQAVNKFVKQHIK-NDQLVN 119 (223)
T ss_dssp CC---CGGGSS-SCSEEEECCCCTHHHHHHHHHSC-TTCEEE
T ss_pred CC---CHhHhC-CCCEEEECCCCHHHHHHHHHHHh-CCCEEE
Confidence 21 123343 44577888887743 343433 555553
No 97
>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*
Probab=40.79 E-value=1.4e+02 Score=28.61 Aligned_cols=44 Identities=9% Similarity=0.172 Sum_probs=34.7
Q ss_pred ccccccCCCEEEEcCC-CCCHHHHHHHHhcCCcEEec--------cCchhHHH
Q 017886 90 QFDVVNKGDVVVLPAF-GAAVEEMVTLNNKNVQIVDT--------TCPWVSKV 133 (364)
Q Consensus 90 ~~~~l~~g~~VIIrAH-Gv~~~v~~~l~~~g~~iiDa--------TCP~V~kv 133 (364)
++..+.+|++++...| ++++++.+.+.++|+++|+. ..|.+...
T Consensus 81 e~~~l~~~~~l~~~~~~~~~~~~l~~l~~~gi~~ia~e~v~~~~~~~p~~s~~ 133 (377)
T 2vhw_A 81 EYGRLRHGQILFTFLHLAASRACTDALLDSGTTSIAYETVQTADGALPLLAPM 133 (377)
T ss_dssp GGGGCCTTCEEEECCCGGGCHHHHHHHHHHTCEEEEGGGCCCTTSCCTTTHHH
T ss_pred HHhhcCCCCEEEEEecccCCHHHHHHHHHcCCeEEEeeeccccCCCccccCch
Confidence 4556667888888888 58899999999999999955 56766533
No 98
>3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4}
Probab=40.11 E-value=52 Score=33.17 Aligned_cols=92 Identities=12% Similarity=0.140 Sum_probs=49.8
Q ss_pred ccccceEEEEeCCCCCcccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHHcCcEEecCCccccccccccCCCE
Q 017886 20 YTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDV 99 (364)
Q Consensus 20 ~~~~~mkI~lA~~~GFC~GV~RAi~~a~~~~~~~~~~~vy~lG~iIHN~~Vv~~L~~~Gv~~v~~~~~~~~~~~l~~g~~ 99 (364)
+.+..++|.+. |.| |.=++ -+|+-+.+. +-.|... +.--++...+.|++.|+.+...- ..+.+..+.-
T Consensus 15 ~~~~~~~i~~i---GiG-g~Gms-~lA~~l~~~--G~~V~~s-D~~~~~~~~~~L~~~gi~~~~G~----~~~~~~~~~d 82 (524)
T 3hn7_A 15 LYFQGMHIHIL---GIC-GTFMG-SLALLARAL--GHTVTGS-DANIYPPMSTQLEQAGVTIEEGY----LIAHLQPAPD 82 (524)
T ss_dssp ----CCEEEEE---TTT-SHHHH-HHHHHHHHT--TCEEEEE-ESCCCTTHHHHHHHTTCEEEESC----CGGGGCSCCS
T ss_pred eeecCCEEEEE---Eec-HhhHH-HHHHHHHhC--CCEEEEE-CCCCCcHHHHHHHHCCCEEECCC----CHHHcCCCCC
Confidence 55677787766 333 22221 023223332 2334432 33223556789999999987542 1233433323
Q ss_pred EEEcCCCCCHH--HHHHHHhcCCcEE
Q 017886 100 VVLPAFGAAVE--EMVTLNNKNVQIV 123 (364)
Q Consensus 100 VIIrAHGv~~~--v~~~l~~~g~~ii 123 (364)
+||.+=|+|+. ++++++++|+.|+
T Consensus 83 ~vV~Spgi~~~~p~l~~a~~~gi~v~ 108 (524)
T 3hn7_A 83 LVVVGNAMKRGMDVIEYMLDTGLRYT 108 (524)
T ss_dssp EEEECTTCCTTSHHHHHHHHHTCCEE
T ss_pred EEEECCCcCCCCHHHHHHHHCCCcEE
Confidence 55666789864 6788899999997
No 99
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=40.07 E-value=1.6e+02 Score=25.41 Aligned_cols=121 Identities=17% Similarity=0.160 Sum_probs=64.0
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHHHH-HHHhhhhCCCEEEEEcCCCCchh
Q 017886 218 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDA-MYKMVEEKVDLILVVGGWNSSNT 296 (364)
Q Consensus 218 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ~a-~~eLa~~~vD~miVVGGknSSNT 296 (364)
..|+++... ++-.-|.++.+-+.+...+. + -++.++++ .....+|.. ++.|....+|.+|+.+ .+
T Consensus 9 ~~Ig~i~~~-~~~~~~~~~~~gi~~~~~~~-g-----~~~~~~~~--~~~~~~~~~~~~~l~~~~~dgiIi~~----~~- 74 (277)
T 3e61_A 9 KLIGLLLPD-MSNPFFTLIARGVEDVALAH-G-----YQVLIGNS--DNDIKKAQGYLATFVSHNCTGMISTA----FN- 74 (277)
T ss_dssp -CEEEEESC-TTSHHHHHHHHHHHHHHHHT-T-----CCEEEEEC--TTCHHHHHHHHHHHHHTTCSEEEECG----GG-
T ss_pred CEEEEEECC-CCCHHHHHHHHHHHHHHHHC-C-----CEEEEEeC--CCCHHHHHHHHHHHHhCCCCEEEEec----CC-
Confidence 478888765 44556788888777643332 2 23333322 223344533 3444446899999987 22
Q ss_pred HHHHH-HHHhhCCCeEEeCCCCccCCCCcchhhh-ccchhhhhcccC-CCCCCEEEEEeCCCC
Q 017886 297 SHLQE-IAEDRGIPSYWIDSEKRIGPGNKIAYKL-MHGELVEKENWL-PKGQITIGITSGAST 356 (364)
Q Consensus 297 ~rL~e-ia~~~~~~t~~Ie~~~eL~~~~~~~~~~-~~~~~~~~~~wl-~~~~~~VGITAGAST 356 (364)
...++ .+++.+.|...+.+..+-.. .+.... ..|+. .-++| ..|.++||+..|...
T Consensus 75 ~~~~~~~l~~~~iPvV~~~~~~~~~~--~V~~D~~~~g~~--a~~~L~~~G~~~i~~i~~~~~ 133 (277)
T 3e61_A 75 ENIIENTLTDHHIPFVFIDRINNEHN--GISTNHFKGGQL--QAEVVRKGKGKNVLIVHENLL 133 (277)
T ss_dssp HHHHHHHHHHC-CCEEEGGGCC-----------HHHHHHH--HHHHHHHTTCCSEEEEESCTT
T ss_pred hHHHHHHHHcCCCCEEEEeccCCCCC--eEEechHHHHHH--HHHHHHHCCCCeEEEEeCCCC
Confidence 33455 66678999999987543221 111111 11221 11222 137889999988643
No 100
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=39.74 E-value=81 Score=27.78 Aligned_cols=126 Identities=8% Similarity=-0.045 Sum_probs=64.5
Q ss_pred ceEEEEEcCCC---ChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHH-HHHHHhhhhCCCEEEEEcCCCC
Q 017886 218 VKVGIANQTTM---LKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNS 293 (364)
Q Consensus 218 ~kv~vvsQTT~---~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ-~a~~eLa~~~vD~miVVGGknS 293 (364)
..|+++..+.+ +-.-|.++.+-+.+...+. + -++.++++ ....++| +.++.|.+..+|.+|+.+...+
T Consensus 5 ~~Ig~i~~~~~~~~~~~~~~~~~~gi~~~a~~~-g-----~~~~~~~~--~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~ 76 (287)
T 3bbl_A 5 FMIGYSWTQTEPGQVNHILDQFLSSMVREAGAV-N-----YFVLPFPF--SEDRSQIDIYRDLIRSGNVDGFVLSSINYN 76 (287)
T ss_dssp CEEEECCCCCCTTCSCCTHHHHHHHHHHHHHHT-T-----CEEEECCC--CSSTTCCHHHHHHHHTTCCSEEEECSCCTT
T ss_pred eEEEEEecccccccCChhHHHHHHHHHHHHHHc-C-----CEEEEEeC--CCchHHHHHHHHHHHcCCCCEEEEeecCCC
Confidence 47888865412 3345677777766543322 2 22333332 1122233 3345554468999999875443
Q ss_pred chhHHHHHHHHhhCCCeEEeCCCCccCCCCcchhhh-ccchhhhhcccCC-CCCCEEEEEeCCCC
Q 017886 294 SNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKL-MHGELVEKENWLP-KGQITIGITSGAST 356 (364)
Q Consensus 294 SNT~rL~eia~~~~~~t~~Ie~~~eL~~~~~~~~~~-~~~~~~~~~~wl~-~~~~~VGITAGAST 356 (364)
. .+++.+.+.+.|...+.+..+-+.-..+.... ..|.. --+||- .|.++||+-.|...
T Consensus 77 ~---~~~~~l~~~~iPvV~~~~~~~~~~~~~V~~D~~~~g~~--a~~~L~~~G~~~I~~i~~~~~ 136 (287)
T 3bbl_A 77 D---PRVQFLLKQKFPFVAFGRSNPDWDFAWVDIDGTAGTRQ--AVEYLIGRGHRRIAILAWPED 136 (287)
T ss_dssp C---HHHHHHHHTTCCEEEESCCSTTCCCCEEEECHHHHHHH--HHHHHHHHTCCCEEEEECCTT
T ss_pred c---HHHHHHHhcCCCEEEECCcCCCCCCCEEEeccHHHHHH--HHHHHHHCCCCeEEEEeCCcc
Confidence 2 34455566789999998743211101111110 11111 112221 37889999988644
No 101
>2xvy_A Chelatase, putative; metal binding protein; HET: HEM; 1.70A {Desulfovibrio vulgaris} PDB: 2xvx_A* 2xvz_A*
Probab=39.29 E-value=1.2e+02 Score=27.43 Aligned_cols=93 Identities=16% Similarity=0.147 Sum_probs=49.5
Q ss_pred hHHHHHHHcCCc-ccc----------cceEEEEeCCCCCcccHHHHHHHHHHHHhhCCC--CceEEecccccCHHHHHHH
Q 017886 8 DIIKKLKENGFE-YTW----------GNVKVKLAESYGFCWGVERAVQIAYEARKQFPE--EKIWITNEIIHNPTVNKRL 74 (364)
Q Consensus 8 ~~~~~~~~~~~~-~~~----------~~mkI~lA~~~GFC~GV~RAi~~a~~~~~~~~~--~~vy~lG~iIHN~~Vv~~L 74 (364)
-|+++|+++|+. +.. |.-+|++..-+=++..+.+.|..+...+++... .++.+..|+--+|..++.|
T Consensus 52 ~i~~~l~~~~~~~P~i~~al~~l~~~G~~~ivV~Pl~l~~G~~~~di~~~~~~l~~~~~~~~~i~~~~pl~~~p~~i~~l 131 (269)
T 2xvy_A 52 MIRAKLRAEGIAAPSPAEALAGMAEEGFTHVAVQSLHTIPGEEFHGLLETAHAFQGLPKGLTRVSVGLPLIGTTADAEAV 131 (269)
T ss_dssp HHHHHHHHTTCCCCCHHHHHHHHHHTTCCEEEEEECCSSSSHHHHHHHHHHHHHTTCTTSCSEEEEECCSSCSHHHHHHH
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHCCCCEEEEEeceeeccHhHHHHHHHHHHHHHhhccCCeEEEeCCCCCCHHHHHHH
Confidence 466777777532 111 224665554444433344433322111443221 3577777888888887776
Q ss_pred HHcCcEEecCCcccccccc-ccCCCEEEEcCCCCCH
Q 017886 75 EEMAVQNIPVEEGKKQFDV-VNKGDVVVLPAFGAAV 109 (364)
Q Consensus 75 ~~~Gv~~v~~~~~~~~~~~-l~~g~~VIIrAHGv~~ 109 (364)
.++=-.. +.. .++++.||+.+||.|.
T Consensus 132 a~~i~~~---------~~~~~~~~~~lll~~HGs~~ 158 (269)
T 2xvy_A 132 AEALVAS---------LPADRKPGEPVVFMGHGTPH 158 (269)
T ss_dssp HHHHHHH---------SCTTCCTTCCEEEEECCCSS
T ss_pred HHHHHHh---------chhhccCCceEEEEECCCCh
Confidence 5541111 111 1235679999999996
No 102
>1dp4_A Atrial natriuretic peptide receptor A; periplasmic binding protein fold, dimer, hormone/growth FACT receptor, lyase complex; HET: NAG; 2.00A {Rattus norvegicus} SCOP: c.93.1.1 PDB: 1t34_A* 3a3k_A*
Probab=39.21 E-value=25 Score=33.23 Aligned_cols=63 Identities=13% Similarity=0.138 Sum_probs=44.1
Q ss_pred ccccccc-----ccHHHHHHHHHHHHhhhhCCCEEEEEcCCCCchhHHHHHHHHhhCCCeEEeC-CCCccC
Q 017886 256 HFISFNT-----ICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWID-SEKRIG 320 (364)
Q Consensus 256 ~~~v~nT-----IC~AT~~RQ~a~~eLa~~~vD~miVVGGknSSNT~rL~eia~~~~~~t~~Ie-~~~eL~ 320 (364)
++.+.|| -|.....-+.+.+.|...++ ..|||+..|+.|..++.++...+.|.+--. +...|.
T Consensus 47 ~~~~~D~~~~p~~c~~~~a~~~a~~~l~~~~v--~aviG~~~S~~~~av~~~~~~~~ip~is~~~~~~~ls 115 (435)
T 1dp4_A 47 RMVLGSSENAAGVCSDTAAPLAAVDLKWEHSP--AVFLGPGCVYSAAPVGRFTAHWRVPLLTAGAPALGIG 115 (435)
T ss_dssp EEEEEECBCTTSSBCTTHHHHHHHHHHHHHCC--SEEECCCSHHHHHHHHHHHHHHTCCEEESCCCCGGGG
T ss_pred EEEEecCcCcccccchhhHHHHHHHHHHhcCc--eEEECCCChHHHHHHHHHHHhcCCcEEcccccccccC
Confidence 5667888 67766555555555643445 468899999999999999999998865433 333443
No 103
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=38.94 E-value=1e+02 Score=27.02 Aligned_cols=91 Identities=8% Similarity=-0.057 Sum_probs=52.3
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHHH-HHHHhhhhCCCEEEEEcCCCCchh
Q 017886 218 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQD-AMYKMVEEKVDLILVVGGWNSSNT 296 (364)
Q Consensus 218 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ~-a~~eLa~~~vD~miVVGGknSSNT 296 (364)
.+|+++.... +-.-|..+.+-+.+...+. + -++.++++-=.....+|. .++.|....+|.+|+.+...+ ..
T Consensus 6 ~~Igvi~~~~-~~~~~~~~~~g~~~~a~~~-g-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~~~-~~ 77 (304)
T 3o1i_D 6 EKICAIYPHL-KDSYWLSVNYGMVSEAEKQ-G-----VNLRVLEAGGYPNKSRQEQQLALCTQWGANAIILGTVDPH-AY 77 (304)
T ss_dssp CEEEEEESCS-CSHHHHHHHHHHHHHHHHH-T-----CEEEEEECSSTTCHHHHHHHHHHHHHHTCSEEEECCSSTT-SS
T ss_pred cEEEEEeCCC-CCcHHHHHHHHHHHHHHHc-C-----CeEEEEcCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChh-HH
Confidence 4799888754 4456777777776643332 2 234444332211333443 344454568999998865443 22
Q ss_pred HHHHHHHHhhCCCeEEeCCCC
Q 017886 297 SHLQEIAEDRGIPSYWIDSEK 317 (364)
Q Consensus 297 ~rL~eia~~~~~~t~~Ie~~~ 317 (364)
...++-+. .+.|...+++..
T Consensus 78 ~~~~~~~~-~~iPvV~~~~~~ 97 (304)
T 3o1i_D 78 EHNLKSWV-GNTPVFATVNQL 97 (304)
T ss_dssp TTTHHHHT-TTSCEEECSSCC
T ss_pred HHHHHHHc-CCCCEEEecCCC
Confidence 23344555 789999996543
No 104
>2aif_A Ribosomal protein L7A; high-mobility like protein, transcription factor, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum} SCOP: d.79.3.1
Probab=38.85 E-value=32 Score=28.81 Aligned_cols=37 Identities=22% Similarity=0.365 Sum_probs=30.0
Q ss_pred EEEEEcCCCCchh--HHHHHHHHhhCCCeEEeCCCCccC
Q 017886 284 LILVVGGWNSSNT--SHLQEIAEDRGIPSYWIDSEKRIG 320 (364)
Q Consensus 284 ~miVVGGknSSNT--~rL~eia~~~~~~t~~Ie~~~eL~ 320 (364)
-++|+..--|.|+ ++|-.+|++++.|.+++.+-.||-
T Consensus 59 klViiA~D~~~~~~~~~l~~lc~~~~IP~~~v~sk~eLG 97 (135)
T 2aif_A 59 EIVLLAADAEPLEILLHLPLVCEDKNTPYVFVRSKVALG 97 (135)
T ss_dssp EEEEEETTCSCHHHHHHHHHHHHHTTCCEEEESCHHHHH
T ss_pred eEEEEecCCChHHHHhHHHHHHHhcCCcEEEECCHHHHH
Confidence 4566666677774 789999999999999999988875
No 105
>3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG, structural genomics center for structural genomics; HET: MSE TRP; 1.35A {Streptococcus pneumoniae}
Probab=38.71 E-value=1.3e+02 Score=26.73 Aligned_cols=87 Identities=15% Similarity=0.229 Sum_probs=49.0
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHHHhhhccccccccc--ccccccccHHHHHHHHHHHHhhhhCCCEEEEEcCCCCch
Q 017886 218 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEH--FISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSN 295 (364)
Q Consensus 218 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~--~~v~nTIC~AT~~RQ~a~~eLa~~~vD~miVVGGknSSN 295 (364)
..|+++ |. ++-.-|.++++-+++.+.+. +.+ +.+ +.+.|+-.+...+ ++.++.|.+.++|.+|++|. ..
T Consensus 3 ~~Igvi-~~-~~~p~~~~i~~gi~~~l~~~-gy~--g~~v~l~~~~~~~~~~~~-~~~~~~l~~~~vDgII~~~~---~~ 73 (295)
T 3lft_A 3 AKIGVL-QF-VSHPSLDLIYKGIQDGLAEE-GYK--DDQVKIDFMNSEGDQSKV-ATMSKQLVANGNDLVVGIAT---PA 73 (295)
T ss_dssp EEEEEE-EC-SCCHHHHHHHHHHHHHHHHT-TCC--GGGEEEEEEECTTCHHHH-HHHHHHHTTSSCSEEEEESH---HH
T ss_pred eEEEEE-Ec-cCChhHHHHHHHHHHHHHHc-CCC--CCceEEEEecCCCCHHHH-HHHHHHHHhcCCCEEEECCc---HH
Confidence 479988 64 55566888888877654443 210 012 2223443333322 23455565578999999873 22
Q ss_pred hHHHHHHHHhhCCCeEEeCC
Q 017886 296 TSHLQEIAEDRGIPSYWIDS 315 (364)
Q Consensus 296 T~rL~eia~~~~~~t~~Ie~ 315 (364)
+..+.+ ...+.|..++..
T Consensus 74 ~~~~~~--~~~~iPvV~~~~ 91 (295)
T 3lft_A 74 AQGLAS--ATKDLPVIMAAI 91 (295)
T ss_dssp HHHHHH--HCSSSCEEEESC
T ss_pred HHHHHH--cCCCCCEEEEec
Confidence 333332 246789888864
No 106
>1mio_A Nitrogenase molybdenum iron protein (alpha chain); HET: HCA CFM CLP; 3.00A {Clostridium pasteurianum} SCOP: c.92.2.3
Probab=38.57 E-value=1.2e+02 Score=30.99 Aligned_cols=106 Identities=11% Similarity=0.036 Sum_probs=65.0
Q ss_pred ceEEEEeCCCCCcc-----cHHHHHHHHHHHHhh-C---C-CCceEEecc--cccC-HHHHHHHHHcCcEEecCCc---c
Q 017886 24 NVKVKLAESYGFCW-----GVERAVQIAYEARKQ-F---P-EEKIWITNE--IIHN-PTVNKRLEEMAVQNIPVEE---G 87 (364)
Q Consensus 24 ~mkI~lA~~~GFC~-----GV~RAi~~a~~~~~~-~---~-~~~vy~lG~--iIHN-~~Vv~~L~~~Gv~~v~~~~---~ 87 (364)
+..|+.+..-||-. |-..|++...+.+-. . + ...|=++|+ +-++ .++..-|+++|+.++-... .
T Consensus 165 ~~pVi~v~tpGf~g~s~~~G~~~a~~al~~~~~~~~~~~~~~~~VNIlG~~~~~gD~~eikrlL~~~Gi~v~~~~~gg~t 244 (533)
T 1mio_A 165 GIPVHAFSCEGYKGVSQSAGHHIANNTVMTDIIGKGNKEQKKYSINVLGEYNIGGDAWEMDRVLEKIGYHVNATLTGDAT 244 (533)
T ss_dssp SSCEEECCCCTTSSSSTHHHHHHHHHHHHHHTTBCCCCCCCTTEEEEEEECCBTSHHHHHHHHHHHHTCEEEEEEETTCC
T ss_pred CCcEEEEeCCCCcCcchhHHHHHHHHHHHHHhcccccCCCCCCeEEEEcCCCChhhHHHHHHHHHHCCCeEEEEeCCCCC
Confidence 46789999999985 777777666554421 1 1 235889987 3444 4566667999998764222 2
Q ss_pred ccccccccCCCEEEEcCCCCCHHHHHHHHhc-CCcEEeccCchh
Q 017886 88 KKQFDVVNKGDVVVLPAFGAAVEEMVTLNNK-NVQIVDTTCPWV 130 (364)
Q Consensus 88 ~~~~~~l~~g~~VIIrAHGv~~~v~~~l~~~-g~~iiDaTCP~V 130 (364)
.+++..++.....|+-.|-.....-+.|+++ |+..+... |+-
T Consensus 245 ~~ei~~~~~A~~niv~~~~~~~~~A~~Leer~GiP~i~~~-piG 287 (533)
T 1mio_A 245 YEKVQNADKADLNLVQCHRSINYIAEMMETKYGIPWIKCN-FIG 287 (533)
T ss_dssp HHHHHBTTSCSEEEESCHHHHHHHHHHHHHHHCCCEEECC-CSS
T ss_pred HHHHHhhhcCCEEEEECHHHHHHHHHHHHHHhCCCeEEec-CCC
Confidence 2334444444434443333345566777665 89999874 763
No 107
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=38.55 E-value=1.7e+02 Score=26.64 Aligned_cols=119 Identities=11% Similarity=0.017 Sum_probs=63.4
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHH-HHHHHhhhhCCCEEEEEcCCCCchh
Q 017886 218 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSNT 296 (364)
Q Consensus 218 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ-~a~~eLa~~~vD~miVVGGknSSNT 296 (364)
..|+++... ++-.-|.++.+-+.+...+. + -++.++++-= .++| +.+..|....+|.+|+.+.
T Consensus 65 ~~Igvi~~~-~~~~~~~~~~~gi~~~a~~~-g-----~~~~~~~~~~---~~~~~~~~~~l~~~~vdGiIi~~~------ 128 (333)
T 3jvd_A 65 ALVGVIVPD-LSNEYYSESLQTIQQDLKAA-G-----YQMLVAEANS---VQAQDVVMESLISIQAAGIIHVPV------ 128 (333)
T ss_dssp CEEEEEESC-SSSHHHHHHHHHHHHHHHHH-T-----CEEEEEECCS---HHHHHHHHHHHHHHTCSEEEECCC------
T ss_pred CEEEEEeCC-CcChHHHHHHHHHHHHHHHC-C-----CEEEEECCCC---hHHHHHHHHHHHhCCCCEEEEcch------
Confidence 478888765 44456777777776643333 2 2334333321 3444 3344454578999999876
Q ss_pred HHHHHHHHhhCCCeEEeCCCCccCCCCcchhhh-ccchhhhhcccC-CCCCCEEEEEeCCCCC
Q 017886 297 SHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKL-MHGELVEKENWL-PKGQITIGITSGASTP 357 (364)
Q Consensus 297 ~rL~eia~~~~~~t~~Ie~~~eL~~~~~~~~~~-~~~~~~~~~~wl-~~~~~~VGITAGASTP 357 (364)
++.+.+.+.|...++...+-+....+.... ..|.. --++| ..|.++||+-+|....
T Consensus 129 ---~~~~~~~~iPvV~~~~~~~~~~~~~V~~D~~~~~~~--a~~~L~~~G~~~I~~i~~~~~~ 186 (333)
T 3jvd_A 129 ---VGSIAPEGIPMVQLTRGELGPGFPRVLCDDEAGFFQ--LTESVLGGSGMNIAALVGEESL 186 (333)
T ss_dssp ---TTCCC-CCSCEEEECC----CCSCEEEECHHHHHHH--HHHHHCCSSSCEEEEEESCTTS
T ss_pred ---HHHHhhCCCCEEEECccCCCCCCCEEEEChHHHHHH--HHHHHHHCCCCeEEEEeCCCCC
Confidence 334456789999998754322111111111 11221 11233 2488999999987443
No 108
>2hqb_A Transcriptional activator of COMK gene; berkeley structure genomics center target 1957B, structural genomics, PSI; 2.70A {Bacillus halodurans}
Probab=38.07 E-value=81 Score=28.56 Aligned_cols=130 Identities=10% Similarity=0.042 Sum_probs=62.3
Q ss_pred ceEEEEEcCCCCh-HHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHHHHHHHhhhhCCCEEEEEcCCCCchh
Q 017886 218 VKVGIANQTTMLK-GETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNT 296 (364)
Q Consensus 218 ~kv~vvsQTT~~~-~~~~~i~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ~a~~eLa~~~vD~miVVGGknSSNT 296 (364)
.+|+++.-..+.- .-|..+.+-+.+. .+.++ -++.+.++.-. ....++.++.|++..+|.+|++|... +
T Consensus 6 ~~Ig~v~~~~~~d~~f~~~~~~gi~~~-~~~~g-----~~~~~~~~~~~-~~~~~~~l~~l~~~~vdgIi~~~~~~---~ 75 (296)
T 2hqb_A 6 GMVGLLVEDTIDDQGWNRKAYEGLLNI-HSNLD-----VDVVLEEGVNS-EQKAHRRIKELVDGGVNLIFGHGHAF---A 75 (296)
T ss_dssp CEEEEECCCC----CCTHHHHHHHHHH-HHHSC-----CEEEEECCCCS-HHHHHHHHHHHHHTTCCEEEECSTHH---H
T ss_pred cEEEEEECCCCCCCcHHHHHHHHHHHH-HHHhC-----CeEEEEeCCCC-HHHHHHHHHHHHHCCCCEEEEcCHhH---H
Confidence 4788876422222 2345555555432 11222 12332222211 22334567778767899999986432 2
Q ss_pred HHHHHHHHhh-CCCeEEeCCCCccCCCCcchhhhccc-hh-hhhcccCCCCCCEEEEEeCCCCCH
Q 017886 297 SHLQEIAEDR-GIPSYWIDSEKRIGPGNKIAYKLMHG-EL-VEKENWLPKGQITIGITSGASTPD 358 (364)
Q Consensus 297 ~rL~eia~~~-~~~t~~Ie~~~eL~~~~~~~~~~~~~-~~-~~~~~wl~~~~~~VGITAGASTP~ 358 (364)
..+.+++++. +.|..+|+...+-+.-..+.+....+ .+ +.-...+ .+.++||.-+|-..|.
T Consensus 76 ~~~~~~~~~~p~~p~v~id~~~~~~~~~~v~~d~~~g~~lag~la~~l-~~~~~Ig~i~g~~~~~ 139 (296)
T 2hqb_A 76 EYFSTIHNQYPDVHFVSFNGEVKGENITSLHFEGYAMGYFGGMVAASM-SETHKVGVIAAFPWQP 139 (296)
T ss_dssp HHHHTTTTSCTTSEEEEESCCCCSSSEEEEEECCHHHHHHHHHHHHHT-CSSSEEEEEESCTTCH
T ss_pred HHHHHHHHHCCCCEEEEEecCcCCCCEEEEEechHHHHHHHHHHHHhh-ccCCeEEEEcCcCchh
Confidence 3355666543 56778887643221100121111111 11 1111234 3578999999976653
No 109
>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU; 2.64A {Bacteroides thetaiotaomicron}
Probab=38.03 E-value=1.8e+02 Score=26.20 Aligned_cols=126 Identities=17% Similarity=0.204 Sum_probs=65.2
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHH-HHHHHhhhhCCCEEEEEcCCCCchh
Q 017886 218 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSNT 296 (364)
Q Consensus 218 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ-~a~~eLa~~~vD~miVVGGknSSNT 296 (364)
..|+++.-+ +-.-|.++.+-+.+...+.. +-++.++++ .....+| +.++.|.+..+|.+|+.+.. +...
T Consensus 7 ~~Igvi~~~--~~~~~~~~~~gi~~~a~~~~-----g~~l~i~~~--~~~~~~~~~~i~~l~~~~vdgiIi~~~~-~~~~ 76 (325)
T 2x7x_A 7 FRIGVAQCS--DDSWRHKMNDEILREAMFYN-----GVSVEIRSA--GDDNSKQAEDVHYFMDEGVDLLIISANE-AAPM 76 (325)
T ss_dssp CEEEEEESC--CSHHHHHHHHHHHHHHTTSS-----SCEEEEEEC--TTCHHHHHHHHHHHHHTTCSEEEECCSS-HHHH
T ss_pred eEEEEEecC--CCHHHHHHHHHHHHHHHHcC-----CcEEEEeCC--CCCHHHHHHHHHHHHHcCCCEEEEeCCC-HHHH
Confidence 478888755 44556677776665322110 123333332 2223344 34555555689999988642 2222
Q ss_pred HHHHHHHHhhCCCeEEeCCCCccCC-CCcchhhh-ccchhhhhcccCC---CCCCEEEEEeCCC
Q 017886 297 SHLQEIAEDRGIPSYWIDSEKRIGP-GNKIAYKL-MHGELVEKENWLP---KGQITIGITSGAS 355 (364)
Q Consensus 297 ~rL~eia~~~~~~t~~Ie~~~eL~~-~~~~~~~~-~~~~~~~~~~wl~---~~~~~VGITAGAS 355 (364)
..+++.+.+.+.|...+.+..+-.+ ...+.... ..|+. --+||- .|.++||+..|..
T Consensus 77 ~~~~~~~~~~~iPvV~~~~~~~~~~~~~~V~~D~~~~g~~--a~~~L~~~~~G~~~I~~i~~~~ 138 (325)
T 2x7x_A 77 TPIVEEAYQKGIPVILVDRKILSDKYTAYIGADNYEIGRS--VGNYIASSLKGKGNIVELTGLS 138 (325)
T ss_dssp HHHHHHHHHTTCCEEEESSCCSSSCSSEEEEECHHHHHHH--HHHHHHHHTTTEEEEEEEESCT
T ss_pred HHHHHHHHHCCCeEEEeCCCCCCcceeEEEecCHHHHHHH--HHHHHHHHcCCCceEEEEECCC
Confidence 3455666678899998886432111 00011100 11211 113332 2789999998863
No 110
>3lkb_A Probable branched-chain amino acid ABC transporter, amino acid binding protein; branched amino acid, PSI-II, NYSGXRC, structural genomics; 2.40A {Thermus thermophilus}
Probab=38.01 E-value=30 Score=32.07 Aligned_cols=60 Identities=10% Similarity=0.188 Sum_probs=42.5
Q ss_pred ccccccccccHHHHHHHHHHHHhhhh-CCCEEEEEcCCCCchhHHHHHHHHhhCCCeEEeCCCCc
Q 017886 255 EHFISFNTICDATQERQDAMYKMVEE-KVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKR 318 (364)
Q Consensus 255 ~~~~v~nTIC~AT~~RQ~a~~eLa~~-~vD~miVVGGknSSNT~rL~eia~~~~~~t~~Ie~~~e 318 (364)
-++.+.|+-|.....+ +++++|..+ +||++| | ..|+.+..+.+++.+.+.|.+......+
T Consensus 49 i~l~~~D~~~~~~~~~-~~~~~li~~~~V~~ii--g-~~s~~~~~~~~~~~~~~iP~i~~~~~~~ 109 (392)
T 3lkb_A 49 FNCVVRDDQYNNANTQ-RFFEEAVDRFKIPVFL--S-YATGANLQLKPLIQELRIPTIPASMHIE 109 (392)
T ss_dssp EEEEEEECTTCHHHHH-HHHHHHHHTTCCSCEE--E-CCHHHHHHHHHHHHHHTCCEEESCCCGG
T ss_pred eEEEEecCCCCHHHHH-HHHHHHHhhcCcEEEE--e-CCcHHHHHHHHHHHhCCceEEecccChh
Confidence 3566788888776654 455566543 677765 5 6788888999999999999877554333
No 111
>1rlg_A 50S ribosomal protein L7AE; protein-RNA, structural protein/RNA complex; HET: 5BU; 2.70A {Archaeoglobus fulgidus} SCOP: d.79.3.1
Probab=37.85 E-value=56 Score=26.45 Aligned_cols=59 Identities=14% Similarity=0.311 Sum_probs=41.3
Q ss_pred hCCCEEEEEcCCCCch-hHHHHHHHHhhCCCeEEeCCCCccCCCCcchhhhccchhhhhcccCC-C-CCCEEEEEeCCCC
Q 017886 280 EKVDLILVVGGWNSSN-TSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLP-K-GQITIGITSGAST 356 (364)
Q Consensus 280 ~~vD~miVVGGknSSN-T~rL~eia~~~~~~t~~Ie~~~eL~~~~~~~~~~~~~~~~~~~~wl~-~-~~~~VGITAGAST 356 (364)
+++-++|+-.+-.... .++|-.+|++.+.|.+++.|-.||-. |+- . ++..++||.+...
T Consensus 42 gka~lViiA~D~~~~~~~~~l~~lc~~~~Vp~~~~~sk~eLG~------------------a~G~~~~~~~vaI~d~g~a 103 (119)
T 1rlg_A 42 GLAKLVYIAEDVDPPEIVAHLPLLCEEKNVPYIYVKSKNDLGR------------------AVGIEVPCASAAIINEGEL 103 (119)
T ss_dssp TCCSEEEEESCCSCSTTTTHHHHHHHHHTCCEEEESCHHHHHH------------------HTTCSSCCSEEEEEECGGG
T ss_pred CCCcEEEEeCCCChHHHHHHHHHHHHHcCCCEEEeCCHHHHHH------------------HhCCCCCeEEEEEecCchH
Confidence 4566665555544433 68999999999999888998888742 331 1 4678999976543
No 112
>1jeo_A MJ1247, hypothetical protein MJ1247; RUMP pathway, phosphosugar, 3-hexulose-6-phosphate isomerase structural genomics; HET: CME CIT; 2.00A {Methanocaldococcus jannaschii} SCOP: c.80.1.3
Probab=37.70 E-value=1.7e+02 Score=24.12 Aligned_cols=22 Identities=14% Similarity=0.305 Sum_probs=16.2
Q ss_pred ccCCCE-EEEcCCCCCHHHHHHH
Q 017886 94 VNKGDV-VVLPAFGAAVEEMVTL 115 (364)
Q Consensus 94 l~~g~~-VIIrAHGv~~~v~~~l 115 (364)
+.++|. ++|+.-|-++++.+.+
T Consensus 80 ~~~~d~vi~iS~sG~t~~~~~~~ 102 (180)
T 1jeo_A 80 YEKDDLLILISGSGRTESVLTVA 102 (180)
T ss_dssp CCTTCEEEEEESSSCCHHHHHHH
T ss_pred CCCCCEEEEEeCCCCcHHHHHHH
Confidence 446776 4689999999877655
No 113
>1vq8_F 50S ribosomal protein L7AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.79.3.1 PDB: 1vq4_F* 1vq5_F* 1vq6_F* 1vq7_F* 1s72_F* 1vq9_F* 1vqk_F* 1vql_F* 1vqm_F* 1vqn_F* 1vqo_F* 1vqp_F* 1yhq_F* 1yi2_F* 1yij_F* 1yit_F* 1yj9_F* 1yjn_F* 1yjw_F* 2otj_F* ...
Probab=37.43 E-value=55 Score=26.53 Aligned_cols=59 Identities=17% Similarity=0.455 Sum_probs=40.7
Q ss_pred hCCCEEEEEcCCCCch-hHHHHHHHHhhCCCeEEeCCCCccCCCCcchhhhccchhhhhcccCC-C-CCCEEEEEeCCCC
Q 017886 280 EKVDLILVVGGWNSSN-TSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLP-K-GQITIGITSGAST 356 (364)
Q Consensus 280 ~~vD~miVVGGknSSN-T~rL~eia~~~~~~t~~Ie~~~eL~~~~~~~~~~~~~~~~~~~~wl~-~-~~~~VGITAGAST 356 (364)
+++-++|+-.+-.... .++|-.+|++.+.|.+++.|-.||-. |+- . ++..++||.+.-.
T Consensus 44 gka~lViiA~D~~~~~~~~~l~~lc~~~~Vp~~~~~sk~eLG~------------------a~G~~~~~~~vaI~d~g~a 105 (120)
T 1vq8_F 44 GSAELVFVAEDVQPEEIVMHIPELADEKGVPFIFVEQQDDLGH------------------AAGLEVGSAAAAVTDAGEA 105 (120)
T ss_dssp TCCSEEEEESCCSSGGGTTTHHHHHHTTCCCEEEESCHHHHHH------------------HTTCSSCCSEEEESSCSSC
T ss_pred CCceEEEEeCCCChHHHHHHHHHHHHhcCCCEEEECCHHHHHH------------------HhCCCCCeEEEEEecCchH
Confidence 4566665555544433 58999999999999888999888742 331 1 4678999866543
No 114
>4hwg_A UDP-N-acetylglucosamine 2-epimerase; ssgcid, structural genomics, seattle structural genomics center for infectious disease, isomerase; 2.00A {Rickettsia bellii}
Probab=36.02 E-value=63 Score=31.08 Aligned_cols=53 Identities=21% Similarity=0.303 Sum_probs=37.8
Q ss_pred ccccHHHHHHHHHHHHhh-hhCCCEEEEEcCCCCchhHHHHHHHHhhCCCeEEeCCC
Q 017886 261 NTICDATQERQDAMYKMV-EEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSE 316 (364)
Q Consensus 261 nTIC~AT~~RQ~a~~eLa-~~~vD~miVVGGknSSNT~rL~eia~~~~~~t~~Ie~~ 316 (364)
.|....|..-...+.++. ..+-|+++|.|+++|.-. +-.|+..+.|.+|++.-
T Consensus 73 ~~~~~~~~~~~~~l~~~l~~~kPD~Vlv~gd~~~~~a---alaA~~~~IPv~h~eag 126 (385)
T 4hwg_A 73 DNTAKSIGLVIEKVDEVLEKEKPDAVLFYGDTNSCLS---AIAAKRRKIPIFHMEAG 126 (385)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHCCSEEEEESCSGGGGG---HHHHHHTTCCEEEESCC
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCcEEEEECCchHHHH---HHHHHHhCCCEEEEeCC
Confidence 456666665555555543 457899999999998766 33577889999999853
No 115
>3eaf_A ABC transporter, substrate binding protein; PSI2, NYSGXRC, substrate binding P structural genomics, protein structure initiative; 2.00A {Aeropyrum pernix}
Probab=35.05 E-value=37 Score=31.63 Aligned_cols=94 Identities=13% Similarity=0.201 Sum_probs=57.1
Q ss_pred cccccccccHHHHHHHHHHHHhh-hhCCCEEEEEcCCCCchhHHHHHHHHhhCCCeEEeCCCCccCCCCcchhhh-c--c
Q 017886 256 HFISFNTICDATQERQDAMYKMV-EEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKL-M--H 331 (364)
Q Consensus 256 ~~~v~nTIC~AT~~RQ~a~~eLa-~~~vD~miVVGGknSSNT~rL~eia~~~~~~t~~Ie~~~eL~~~~~~~~~~-~--~ 331 (364)
++.+.|+-|......+ ++++|. ..+||++ || ..|+.+..+.+++.+.+.|.+......++.. ....|.. . .
T Consensus 51 ~l~~~D~~~~~~~a~~-~~~~li~~~~V~~i--iG-~~s~~~~a~~~~~~~~~iP~i~~~~~~~~~~-~~~~f~~~~~~~ 125 (391)
T 3eaf_A 51 NYIKRDYAYNPTTAEE-YYREFRDRYGVIAI--IG-WGTADTEKLSDQVDTDKITYISASYSAKLLV-KPFNFYPAPDYS 125 (391)
T ss_dssp EEEEEECTTCHHHHHH-HHHHHHHTTCCSEE--EE-CCHHHHHHHHHHHHHHTCEEEESCCCGGGTT-STTEECSSCCHH
T ss_pred EEEEeCCCCCHHHHHH-HHHHHHhhcCcEEE--EE-cCcHHHHHHHHHHhhcCCeEEecccchhhcC-CCcEEEeCCCHH
Confidence 5678888888766544 455565 4567765 56 6788899999999999988877665554421 1122221 0 0
Q ss_pred chhhhhcccCCC--CCCEEEEEeCC
Q 017886 332 GELVEKENWLPK--GQITIGITSGA 354 (364)
Q Consensus 332 ~~~~~~~~wl~~--~~~~VGITAGA 354 (364)
.+.....+|+.. +.++|+|-.+.
T Consensus 126 ~~~~~~~~~l~~~~g~~~iaii~~~ 150 (391)
T 3eaf_A 126 TQACSGLAFLASEFGQGKLALAYDS 150 (391)
T ss_dssp HHHHHHHHHHHHHHCSEEEEEEECT
T ss_pred HHHHHHHHHHHHhcCCCEEEEEEec
Confidence 111112234311 67899998873
No 116
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=34.47 E-value=2.4e+02 Score=24.87 Aligned_cols=124 Identities=13% Similarity=0.103 Sum_probs=65.8
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHHH-HHHHhhhhCCCEEEEEcCCCCchh
Q 017886 218 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQD-AMYKMVEEKVDLILVVGGWNSSNT 296 (364)
Q Consensus 218 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ~-a~~eLa~~~vD~miVVGGknSSNT 296 (364)
..|+++.... +-.-|.++.+-+.+...+. + -++.++++-- ..++|. .++.|.+..+|.+|+.+...+..
T Consensus 16 ~~Igvi~~~~-~~~~~~~~~~gi~~~a~~~-g-----~~~~~~~~~~--~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~- 85 (303)
T 3kke_A 16 GTIGLIVPDV-NNAVFADMFSGVQMAASGH-S-----TDVLLGQIDA--PPRGTQQLSRLVSEGRVDGVLLQRREDFDD- 85 (303)
T ss_dssp -CEEEEESCT-TSTTHHHHHHHHHHHHHHT-T-----CCEEEEECCS--TTHHHHHHHHHHHSCSSSEEEECCCTTCCH-
T ss_pred CEEEEEeCCC-cChHHHHHHHHHHHHHHHC-C-----CEEEEEeCCC--ChHHHHHHHHHHHhCCCcEEEEecCCCCcH-
Confidence 4788887653 3345677777776643332 2 2344443322 223443 34445446899999998765532
Q ss_pred HHHHHHHHhhCCCeEEeCCCCccCCCCcchhhh-ccchhhhhcccC-CCCCCEEEEEeCCCC
Q 017886 297 SHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKL-MHGELVEKENWL-PKGQITIGITSGAST 356 (364)
Q Consensus 297 ~rL~eia~~~~~~t~~Ie~~~eL~~~~~~~~~~-~~~~~~~~~~wl-~~~~~~VGITAGAST 356 (364)
. .++.+.+ +.|...++...+- .-..+.... ..|..- -++| ..|.++||+-+|...
T Consensus 86 ~-~~~~l~~-~iPvV~i~~~~~~-~~~~V~~D~~~~g~~a--~~~L~~~G~~~I~~i~~~~~ 142 (303)
T 3kke_A 86 D-MLAAVLE-GVPAVTINSRVPG-RVGSVILDDQKGGGIA--TEHLITLGHSRIAFISGTAI 142 (303)
T ss_dssp H-HHHHHHT-TSCEEEESCCCTT-CCCEEEECHHHHHHHH--HHHHHHTTCCSEEEEESCSS
T ss_pred H-HHHHHhC-CCCEEEECCcCCC-CCCEEEECcHHHHHHH--HHHHHHCCCCeEEEEeCCCc
Confidence 1 3444445 8999999875432 111111110 112111 1222 248899999988654
No 117
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=34.34 E-value=2.3e+02 Score=24.65 Aligned_cols=124 Identities=12% Similarity=0.085 Sum_probs=64.2
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHHH-HHHHhhhhCCCEEEEEcCCCCchh
Q 017886 218 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQD-AMYKMVEEKVDLILVVGGWNSSNT 296 (364)
Q Consensus 218 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ~-a~~eLa~~~vD~miVVGGknSSNT 296 (364)
..|+++... ++-.-|..+.+-+.+...+. + -++.++++ ....++|. .++.|.+..+|.+|+.+...+ .
T Consensus 9 ~~Igvi~~~-~~~~~~~~~~~gi~~~~~~~-g-----~~~~~~~~--~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~--~ 77 (285)
T 3c3k_A 9 GMLLVMVSN-IANPFCAAVVKGIEKTAEKN-G-----YRILLCNT--ESDLARSRSCLTLLSGKMVDGVITMDALSE--L 77 (285)
T ss_dssp CEEEEEESC-TTSHHHHHHHHHHHHHHHHT-T-----CEEEEEEC--TTCHHHHHHHTHHHHTTCCSEEEECCCGGG--H
T ss_pred CEEEEEeCC-CCCchHHHHHHHHHHHHHHc-C-----CEEEEEeC--CCCHHHHHHHHHHHHhCCCCEEEEeCCCCC--h
Confidence 579988865 34456777777776543322 2 22333332 22234443 345554468999999875322 2
Q ss_pred HHHHHHHHhhCCCeEEeCCCCccCCCCcchhhh-ccchhhhhcccC-CCCCCEEEEEeCCCC
Q 017886 297 SHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKL-MHGELVEKENWL-PKGQITIGITSGAST 356 (364)
Q Consensus 297 ~rL~eia~~~~~~t~~Ie~~~eL~~~~~~~~~~-~~~~~~~~~~wl-~~~~~~VGITAGAST 356 (364)
..++.++ .+.|...+++..+-+.-..+.... ..|.. --+|| ..|.++||+-.|...
T Consensus 78 -~~~~~l~-~~iPvV~~~~~~~~~~~~~V~~D~~~~g~~--a~~~L~~~G~~~I~~i~~~~~ 135 (285)
T 3c3k_A 78 -PELQNII-GAFPWVQCAEYDPLSTVSSVSIDDVAASEY--VVDQLVKSGKKRIALINHDLA 135 (285)
T ss_dssp -HHHHHHH-TTSSEEEESSCCTTSSSCEEECCHHHHHHH--HHHHHHHTTCCCEEEEECCTT
T ss_pred -HHHHHHh-cCCCEEEEccccCCCCCCEEEEChHHHHHH--HHHHHHHcCCCeEEEEeCCCc
Confidence 3333445 789999998643211101111110 11211 11222 137899999988643
No 118
>3om0_A Glutamate receptor, ionotropic kainate 5; membrane protein, ION channel; HET: NAG BMA GOL; 1.40A {Rattus norvegicus} PDB: 3om1_A* 3qlu_A* 3qlv_A
Probab=34.20 E-value=25 Score=32.95 Aligned_cols=56 Identities=21% Similarity=0.346 Sum_probs=39.9
Q ss_pred cccccccccHHHHHHHHHHHHhhhhCCCEEEEEcCCCCchh-HHHHHHHHhhCCCeEEe
Q 017886 256 HFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNT-SHLQEIAEDRGIPSYWI 313 (364)
Q Consensus 256 ~~~v~nTIC~AT~~RQ~a~~eLa~~~vD~miVVGGknSSNT-~rL~eia~~~~~~t~~I 313 (364)
++.+.|+-|.....-..++.+|..+ .+..|||+..|+.| .-+..++.+.+.|..--
T Consensus 45 ~~~~~D~~~~~~~~~~~~~~~l~~~--~V~aiiG~~~S~~~~~a~~~i~~~~~ip~is~ 101 (393)
T 3om0_A 45 EVDIFELQRDSQYETTDTMCQILPK--GVVSVLGPSSSPASASTVSHICGEKEIPHIKV 101 (393)
T ss_dssp EEEEEECCSSCHHHHHHHHHHHGGG--CCSCEECCSSCHHHHHHHHHHHHHHTCCEEEC
T ss_pred EEEEEecCCCchhHHHHHHHHHHhc--CcEEEECCCCchhHHHHHHHHHhccCCCeEec
Confidence 5667888886554445566666533 35567899999776 59999999999886543
No 119
>1w41_A 50S ribosomal protein L30E; electrostatic interactions, thermostability, protein engineering; 1.7A {Thermococcus celer} SCOP: d.79.3.1 PDB: 3n4y_A 3lfo_A 1w40_A 1go0_A 1go1_A 1h7m_A 1w42_A 1w3e_X 3ra6_A 3ra5_A 3n4z_A 2bo1_A
Probab=34.09 E-value=56 Score=25.59 Aligned_cols=40 Identities=23% Similarity=0.382 Sum_probs=31.7
Q ss_pred hCCCEEEEEcCCCCchhH-HHHHHHHhhCCCeEEe-CCCCccC
Q 017886 280 EKVDLILVVGGWNSSNTS-HLQEIAEDRGIPSYWI-DSEKRIG 320 (364)
Q Consensus 280 ~~vD~miVVGGknSSNT~-rL~eia~~~~~~t~~I-e~~~eL~ 320 (364)
+++-++|+-.+ -|.|+. +|-..|++++.|.|.+ .|-.||-
T Consensus 31 gka~lViiA~D-~~~~~~~~l~~~c~~~~vp~~~~~~s~~eLG 72 (101)
T 1w41_A 31 GGAKLIIVARN-ARPDIKEDIEYYARLSGIPVYEFEGTSVELG 72 (101)
T ss_dssp TCCSEEEEETT-SCHHHHHHHHHHHHHHTCCEEEESSCHHHHH
T ss_pred CCCcEEEEeCC-CCHHHHHHHHHHHHhcCCCEEEecCCHHHHH
Confidence 56777777777 788887 5778899999998875 8888875
No 120
>3saj_A Glutamate receptor 1; rossman fold, ION channel, membrane, transport protein; HET: NAG BMA MAN; 2.50A {Rattus norvegicus}
Probab=34.00 E-value=20 Score=33.55 Aligned_cols=55 Identities=5% Similarity=-0.109 Sum_probs=40.4
Q ss_pred ccccccccc-HHHHHHHHHHHHhhhhCCCEEEEEcCCCCchhHHHHHHHHhhCCCeEEe
Q 017886 256 HFISFNTIC-DATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWI 313 (364)
Q Consensus 256 ~~~v~nTIC-~AT~~RQ~a~~eLa~~~vD~miVVGGknSSNT~rL~eia~~~~~~t~~I 313 (364)
++.+.|+-| ....-. .++.+|..+ .+..|||+..|+.+.-+..++.+.+.|.+--
T Consensus 42 ~~~~~D~~~~d~~~a~-~~~~~l~~~--~V~aiiG~~~S~~~~a~~~~~~~~~iP~is~ 97 (384)
T 3saj_A 42 LPQIDIVNISDSFEMT-YRFCSQFSK--GVYAIFGFYERRTVNMLTSFCGALHVCFITP 97 (384)
T ss_dssp EEEEEECCTTCHHHHH-HHHHHHHHT--TCSCEEECCCHHHHHHHHHHHHHHTCCEEEC
T ss_pred ceeeEecccCchhhHH-HHHHHHHhc--CeEEEECCCCHHHHHHHHHHhccCCCCeEec
Confidence 456778888 554433 455666533 5667899999999999999999999886544
No 121
>2jyx_A Lipoprotein SPR; solution structure, construct optimized, membrane, palmitate, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli K12} PDB: 2k1g_A
Probab=33.71 E-value=42 Score=27.83 Aligned_cols=76 Identities=24% Similarity=0.454 Sum_probs=46.5
Q ss_pred CCccccchHHHHHHHc-CCcccccceEEEEeCCCCC-cccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHHcC
Q 017886 1 MNQEYTSDIIKKLKEN-GFEYTWGNVKVKLAESYGF-CWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMA 78 (364)
Q Consensus 1 ~~~~y~~~~~~~~~~~-~~~~~~~~mkI~lA~~~GF-C~GV~RAi~~a~~~~~~~~~~~vy~lG~iIHN~~Vv~~L~~~G 78 (364)
|+++-+..|++..+.. |.++.||+.. +.|| |.|.-+ .++... ++ |.-|..-....+.|
T Consensus 1 m~~~~r~~i~~~A~~~lG~pY~~Gg~~-----~~g~DCSGlv~---~~~~~~--~G----------i~lpr~s~~q~~~g 60 (136)
T 2jyx_A 1 MNVDVKSRIMDQYADWKGVRYRLGGST-----KKGIDCSGFVQ---RTFREQ--FG----------LELPRSTYEQQEMG 60 (136)
T ss_dssp CCCCHHHHHHHHHHHHSSCCBCTTCEE-----TTEECHHHHHH---HHHHHH--TC----------CCCCSSHHHHGGGS
T ss_pred CCHHHHHHHHHHHHHhCCCCccCCCCC-----CCCeEHHHHHH---HHHHHh--cC----------CCCCCCHHHHHhcC
Confidence 5666677777766554 8999999864 6788 999755 333211 21 11233334455555
Q ss_pred cEEecCCccccccccccCCCEEEEcC
Q 017886 79 VQNIPVEEGKKQFDVVNKGDVVVLPA 104 (364)
Q Consensus 79 v~~v~~~~~~~~~~~l~~g~~VIIrA 104 (364)
-. ++ .+++.+||.|+++.
T Consensus 61 ~~-v~-------~~~l~pGDLvff~~ 78 (136)
T 2jyx_A 61 KS-VS-------RSNLRTGDLVLFRA 78 (136)
T ss_dssp EE-CC-------TTTCCTTEEEEEEC
T ss_pred eE-cc-------hHhCCCCCEEEECC
Confidence 33 32 35677899998874
No 122
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=33.37 E-value=2.4e+02 Score=24.42 Aligned_cols=87 Identities=26% Similarity=0.273 Sum_probs=50.4
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHH-HHHHHhhhhCCCEEEEEcCCCCchh
Q 017886 218 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSNT 296 (364)
Q Consensus 218 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ-~a~~eLa~~~vD~miVVGGknSSNT 296 (364)
..|+++.-.. +-.-|.++.+-+.+...+. + -++.++++ ....++| +.++.|.+..+|.+|+.+...+.
T Consensus 8 ~~Ig~i~~~~-~~~~~~~~~~gi~~~~~~~-g-----~~~~~~~~--~~~~~~~~~~~~~l~~~~vdgii~~~~~~~~-- 76 (289)
T 1dbq_A 8 KSIGLLATSS-EAAYFAEIIEAVEKNCFQK-G-----YTLILGNA--WNNLEKQRAYLSMMAQKRVDGLLVMCSEYPE-- 76 (289)
T ss_dssp CEEEEEESCT-TSHHHHHHHHHHHHHHHHH-T-----CEEEEEEC--TTCHHHHHHHHHHHHHTTCSEEEEECSCCCH--
T ss_pred CEEEEEeCCC-CChHHHHHHHHHHHHHHHc-C-----CeEEEEcC--CCChHHHHHHHHHHHhCCCCEEEEEeccCCH--
Confidence 4788887543 4455677777776543322 2 22333322 2333444 33555555689999998865432
Q ss_pred HHHHHHHHh-hCCCeEEeCCC
Q 017886 297 SHLQEIAED-RGIPSYWIDSE 316 (364)
Q Consensus 297 ~rL~eia~~-~~~~t~~Ie~~ 316 (364)
.+.+..++ .+.|...+.+.
T Consensus 77 -~~~~~l~~~~~iPvV~~~~~ 96 (289)
T 1dbq_A 77 -PLLAMLEEYRHIPMVVMDWG 96 (289)
T ss_dssp -HHHHHHHHTTTSCEEEEECS
T ss_pred -HHHHHHHhccCCCEEEEccC
Confidence 34444444 68899888764
No 123
>2ale_A SNU13, NHP2/L7AE family protein YEL026W; splicing, RNA, yeast, His-TAG, RNA binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: d.79.3.1 PDB: 1zwz_A 2ozb_A 3siu_A 3siv_A 1e7k_A
Probab=32.89 E-value=44 Score=28.04 Aligned_cols=66 Identities=21% Similarity=0.287 Sum_probs=42.5
Q ss_pred hCCCEEEEEcCCCCc-hhHHHHHHHHhhCCCeEEeCCCCccCCCCcchhhhccchhhhhcccCC--CCCCEEEEEe-CCC
Q 017886 280 EKVDLILVVGGWNSS-NTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLP--KGQITIGITS-GAS 355 (364)
Q Consensus 280 ~~vD~miVVGGknSS-NT~rL~eia~~~~~~t~~Ie~~~eL~~~~~~~~~~~~~~~~~~~~wl~--~~~~~VGITA-GAS 355 (364)
+++-++|+-++-... -..+|-.+|++.+.|.+++.+-.||-. |.- .++..++||- |.|
T Consensus 47 gkakLViiA~D~~p~~~~~~l~~lc~~~~VP~~~v~sk~eLG~------------------a~G~~~~~s~vaI~d~~~s 108 (134)
T 2ale_A 47 GISEFIIMAADCEPIEILLHLPLLCEDKNVPYVFVPSRVALGR------------------ACGVSRPVIAASITTNDAS 108 (134)
T ss_dssp TCEEEEEEETTCSSGGGGTHHHHHHHHHTCCEEEESCHHHHHH------------------HTTCSSCCSEEEEECCTTC
T ss_pred CCCeEEEEeCCCCHHHHHHHHHHHHHhcCCCEEEECCHHHHHH------------------HhCCCCCeEEEEEEcCChH
Confidence 345555555554443 267899999999999999988887742 331 1345789885 455
Q ss_pred CCHHHHhc
Q 017886 356 TPDKVISS 363 (364)
Q Consensus 356 TP~~lI~e 363 (364)
.=..++++
T Consensus 109 ~~~~l~~~ 116 (134)
T 2ale_A 109 AIKTQIYA 116 (134)
T ss_dssp TTHHHHHH
T ss_pred HHHHHHHH
Confidence 55555543
No 124
>1xbi_A 50S ribosomal protein L7AE; alpha-beta-alpha sandwich fold, RNA binding protein/structural protein complex; HET: EPE; 1.45A {Methanocaldococcus jannaschii} SCOP: d.79.3.1 PDB: 1ra4_A* 1sds_A 3paf_A
Probab=32.76 E-value=76 Score=25.81 Aligned_cols=58 Identities=17% Similarity=0.390 Sum_probs=40.7
Q ss_pred hCCCEEEEEcCCCCch--hHHHHHHHHhhCCCeEEeCCCCccCCCCcchhhhccchhhhhcccCC-C-CCCEEEEEeCCC
Q 017886 280 EKVDLILVVGGWNSSN--TSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLP-K-GQITIGITSGAS 355 (364)
Q Consensus 280 ~~vD~miVVGGknSSN--T~rL~eia~~~~~~t~~Ie~~~eL~~~~~~~~~~~~~~~~~~~~wl~-~-~~~~VGITAGAS 355 (364)
+++-++|+-.+ -|.| .++|-.+|++.+.|.+++.|-.||-. |+- . ++..|+||-...
T Consensus 44 gka~lViiA~D-~~p~~~~~~l~~lc~~~~VP~~~v~sk~eLG~------------------a~G~~~~~s~vaI~d~g~ 104 (120)
T 1xbi_A 44 GIAKLVIIAED-VKPEEVVAHLPYLCEEKGIPYAYVASKQDLGK------------------AAGLEVAASSVAIINEGD 104 (120)
T ss_dssp TCCSEEEEESC-CSSGGGTTTHHHHHHHHTCCEEEESCHHHHHH------------------HTTCSSCCSEEEEEECSC
T ss_pred CCceEEEEcCC-CChHHHHHHHHHHHHhcCCCEEEeCCHHHHHH------------------HhCCCCCEEEEEEeccch
Confidence 45666555554 4455 58999999999999888999888752 331 1 467899997654
Q ss_pred C
Q 017886 356 T 356 (364)
Q Consensus 356 T 356 (364)
.
T Consensus 105 a 105 (120)
T 1xbi_A 105 A 105 (120)
T ss_dssp H
T ss_pred H
Confidence 3
No 125
>2j13_A Polysaccharide deacetylase; family 4, peptidoglycan, hydrolase, bacterial cell WALL, carbohydrate esterase; 1.7A {Bacillus anthracis} SCOP: c.6.2.3
Probab=32.75 E-value=2.4e+02 Score=25.33 Aligned_cols=44 Identities=14% Similarity=0.041 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHhhC-CCC--ceEEecccccCHHHHHHHHHcCcEEec
Q 017886 40 ERAVQIAYEARKQF-PEE--KIWITNEIIHNPTVNKRLEEMAVQNIP 83 (364)
Q Consensus 40 ~RAi~~a~~~~~~~-~~~--~vy~lG~iIHN~~Vv~~L~~~Gv~~v~ 83 (364)
++=|..+.+++++. +.. +.|..----.|+.+.+.|+++|..++.
T Consensus 129 ~~ei~~~~~~l~~~~G~~~~~~fr~P~G~~~~~~~~~l~~~G~~~v~ 175 (247)
T 2j13_A 129 REELTSVTEEIKKVTGQKEVKYVRPPRGVFSERTLALTKEMGYYNVF 175 (247)
T ss_dssp HHHHHHHHHHHHHHHCCSCCCEECCGGGEECHHHHHHHHHTTCEEEC
T ss_pred HHHHHHHHHHHHHHhCCCCCcEEeCCCCCCCHHHHHHHHHCCCEEEe
Confidence 34444455555431 112 244443345699999999999999764
No 126
>3v7e_A Ribosome-associated protein L7AE-like; RNA-protein complex, K-turn, L7AE-like, A member L7AE/L30E superfamily; HET: SAM; 2.80A {Bacillus subtilis}
Probab=32.62 E-value=36 Score=25.93 Aligned_cols=40 Identities=25% Similarity=0.400 Sum_probs=29.6
Q ss_pred hCCCEEEEEcCCCCchhH-HHHHHHHhhCCCeEEeCCCCccC
Q 017886 280 EKVDLILVVGGWNSSNTS-HLQEIAEDRGIPSYWIDSEKRIG 320 (364)
Q Consensus 280 ~~vD~miVVGGknSSNT~-rL~eia~~~~~~t~~Ie~~~eL~ 320 (364)
+++-++|+-.+-.. |+. +|-.+|++.+.|.+++.+-.||-
T Consensus 26 gkaklViiA~D~~~-~~~~~i~~lc~~~~Ip~~~v~sk~eLG 66 (82)
T 3v7e_A 26 GSVKEVVVAKDADP-ILTSSVVSLAEDQGISVSMVESMKKLG 66 (82)
T ss_dssp TCEEEEEEETTSCH-HHHHHHHHHHHHHTCCEEEESCHHHHH
T ss_pred CCeeEEEEeCCCCH-HHHHHHHHHHHHcCCCEEEECCHHHHH
Confidence 45555555555554 655 77789999999999999988874
No 127
>3mmz_A Putative HAD family hydrolase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.84A {Streptomyces avermitilis}
Probab=32.01 E-value=1.1e+02 Score=25.49 Aligned_cols=67 Identities=6% Similarity=-0.055 Sum_probs=51.6
Q ss_pred HHHHHHHcCcEEecCCccccccccccCCCEEEEcCCCCCHHHHHHHHhcCCcEEeccCchhHHHHHHHHHHhhCCCeEEE
Q 017886 70 VNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSII 149 (364)
Q Consensus 70 Vv~~L~~~Gv~~v~~~~~~~~~~~l~~g~~VIIrAHGv~~~v~~~l~~~g~~iiDaTCP~V~kv~~~v~~~~~~Gy~iII 149 (364)
.++.|+++|+.+. |++ -+-...+...++..|+.+++...|...-++...+++.-+...++.
T Consensus 47 ~l~~L~~~g~~~~------------------i~T-~~~~~~~~~~~~~lgi~~~~~~~~k~~~l~~~~~~~~~~~~~~~~ 107 (176)
T 3mmz_A 47 GIAALRKSGLTML------------------ILS-TEQNPVVAARARKLKIPVLHGIDRKDLALKQWCEEQGIAPERVLY 107 (176)
T ss_dssp HHHHHHHTTCEEE------------------EEE-SSCCHHHHHHHHHHTCCEEESCSCHHHHHHHHHHHHTCCGGGEEE
T ss_pred HHHHHHHCCCeEE------------------EEE-CcChHHHHHHHHHcCCeeEeCCCChHHHHHHHHHHcCCCHHHEEE
Confidence 6788888887643 111 123456777888889889999999999999999888777788999
Q ss_pred EecCCC
Q 017886 150 HGKYSH 155 (364)
Q Consensus 150 iG~~~H 155 (364)
+||..+
T Consensus 108 vGD~~n 113 (176)
T 3mmz_A 108 VGNDVN 113 (176)
T ss_dssp EECSGG
T ss_pred EcCCHH
Confidence 999864
No 128
>3jyw_G 60S ribosomal protein L8(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 1s1i_G
Probab=31.87 E-value=42 Score=27.53 Aligned_cols=40 Identities=18% Similarity=0.364 Sum_probs=29.9
Q ss_pred hCCCEEEEEcCCCCchh--HHHHHHHHhhCCCeEEeCCCCccC
Q 017886 280 EKVDLILVVGGWNSSNT--SHLQEIAEDRGIPSYWIDSEKRIG 320 (364)
Q Consensus 280 ~~vD~miVVGGknSSNT--~rL~eia~~~~~~t~~Ie~~~eL~ 320 (364)
++.-+ +||.+--|.|+ .+|-.+|++++.|.+++.+-.+|-
T Consensus 40 gka~L-VvIA~D~~p~~i~~~l~~lC~~~~VP~~~v~sk~~LG 81 (113)
T 3jyw_G 40 KKAKL-VLIANDVDPIELVVFLPALCKKMGVPYAIVKGKARLG 81 (113)
T ss_dssp TCCSE-EEECSCCSSHHHHTTHHHHHHHTTCCCEECSCSTTTH
T ss_pred CCceE-EEEeCCCCHHHHHHHHHHHHHHcCCCEEEECCHHHHH
Confidence 34444 45555555654 568899999999999999998885
No 129
>1lbq_A Ferrochelatase; rossmann fold, PI-helix, lyase; 2.40A {Saccharomyces cerevisiae} SCOP: c.92.1.1 PDB: 1l8x_A
Probab=31.70 E-value=80 Score=30.69 Aligned_cols=69 Identities=13% Similarity=0.123 Sum_probs=42.6
Q ss_pred eEEecccccCHHHHHHHHHcCcEEecCCccccccc-cccCCCEEEEcCCCCCHHHHHHHHhcCCcEEeccCchhHHHHHH
Q 017886 58 IWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFD-VVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTS 136 (364)
Q Consensus 58 vy~lG~iIHN~~Vv~~L~~~Gv~~v~~~~~~~~~~-~l~~g~~VIIrAHGv~~~v~~~l~~~g~~iiDaTCP~V~kv~~~ 136 (364)
+-..-+.=.+|..++.|.++=-..+.. +. +.+++..|||++||+|....+ +| -|+...+++.
T Consensus 162 i~~i~~~~~~p~~I~ala~~I~~~l~~------~~~~~~~~~~llfSaHglP~~~~~----~G-------DpY~~q~~~t 224 (362)
T 1lbq_A 162 WSVIDRWPTNEGLIKAFSENITKKLQE------FPQPVRDKVVLLFSAHSLPMDVVN----TG-------DAYPAEVAAT 224 (362)
T ss_dssp EEEECCCTTCHHHHHHHHHHHHHHHHT------SCSTTGGGCEEEEEEECCBHHHHT----TT-------CSHHHHHHHH
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHHHh------cCcccCCCeEEEEecCCCcccccc----CC-------CcHHHHHHHH
Confidence 346666666777777665541111111 10 011234899999999988753 34 6788898888
Q ss_pred HHHHhhC
Q 017886 137 VEKHKKG 143 (364)
Q Consensus 137 v~~~~~~ 143 (364)
++.+.++
T Consensus 225 a~ll~e~ 231 (362)
T 1lbq_A 225 VYNIMQK 231 (362)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8877664
No 130
>1k1e_A Deoxy-D-mannose-octulosonate 8-phosphate phosphat; structural genomics, KDO 8-P phosphatase, structure function project, S2F; HET: MES; 1.67A {Haemophilus influenzae RD} SCOP: c.108.1.5 PDB: 1j8d_A*
Probab=31.48 E-value=1.4e+02 Score=24.71 Aligned_cols=74 Identities=9% Similarity=-0.035 Sum_probs=50.8
Q ss_pred CHHHHHHHHHcCcEEecCCccccccccccCCCEEEEcCCCCCHHHHHHHHhcCCc-EEeccCchhHHHHHHHHHHhhCCC
Q 017886 67 NPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQ-IVDTTCPWVSKVWTSVEKHKKGDY 145 (364)
Q Consensus 67 N~~Vv~~L~~~Gv~~v~~~~~~~~~~~l~~g~~VIIrAHGv~~~v~~~l~~~g~~-iiDaTCP~V~kv~~~v~~~~~~Gy 145 (364)
+.+.++.|+++|+.++= -.| +-.......++..|+. +++..+|.-.-+....+++.-.-.
T Consensus 40 ~~~~l~~L~~~G~~~~i-----------~Tg--------~~~~~~~~~~~~lgl~~~~~~~k~k~~~~~~~~~~~~~~~~ 100 (180)
T 1k1e_A 40 DGLGIKMLMDADIQVAV-----------LSG--------RDSPILRRRIADLGIKLFFLGKLEKETACFDLMKQAGVTAE 100 (180)
T ss_dssp HHHHHHHHHHTTCEEEE-----------EES--------CCCHHHHHHHHHHTCCEEEESCSCHHHHHHHHHHHHTCCGG
T ss_pred hHHHHHHHHHCCCeEEE-----------EeC--------CCcHHHHHHHHHcCCceeecCCCCcHHHHHHHHHHcCCCHH
Confidence 55788899888876551 012 1234566677777875 678889988888888777755557
Q ss_pred eEEEEecCCCceeee
Q 017886 146 TSIIHGKYSHEETVA 160 (364)
Q Consensus 146 ~iIIiG~~~HpEv~g 160 (364)
.++.|||.. --+.+
T Consensus 101 ~~~~vGD~~-~Di~~ 114 (180)
T 1k1e_A 101 QTAYIGDDS-VDLPA 114 (180)
T ss_dssp GEEEEECSG-GGHHH
T ss_pred HEEEECCCH-HHHHH
Confidence 899999886 34443
No 131
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=31.48 E-value=2.1e+02 Score=25.89 Aligned_cols=124 Identities=13% Similarity=0.084 Sum_probs=65.4
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHHHH-HHHhhhhCCCEEEEEcCCCCchh
Q 017886 218 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDA-MYKMVEEKVDLILVVGGWNSSNT 296 (364)
Q Consensus 218 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ~a-~~eLa~~~vD~miVVGGknSSNT 296 (364)
..|+++.... +-.-|.++.+-+.+...+. +-++.+.++- ...++|.. ++.|....+|.+|+.+...+.
T Consensus 69 ~~Ig~i~~~~-~~~~~~~~~~gi~~~a~~~------g~~~~~~~~~--~~~~~~~~~i~~l~~~~vdGiIi~~~~~~~-- 137 (344)
T 3kjx_A 69 NLVAVIIPSL-SNMVFPEVLTGINQVLEDT------ELQPVVGVTD--YLPEKEEKVLYEMLSWRPSGVIIAGLEHSE-- 137 (344)
T ss_dssp SEEEEEESCS-SSSSHHHHHHHHHHHHTSS------SSEEEEEECT--TCHHHHHHHHHHHHTTCCSEEEEECSCCCH--
T ss_pred CEEEEEeCCC-CcHHHHHHHHHHHHHHHHC------CCEEEEEeCC--CCHHHHHHHHHHHHhCCCCEEEEECCCCCH--
Confidence 4788887543 3345777777776632222 2223333221 23344433 444544689999999755443
Q ss_pred HHHHHHHHhhCCCeEEeCCCCccCCCCcchhhh-ccchhhhhcccC-CCCCCEEEEEeCCC
Q 017886 297 SHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKL-MHGELVEKENWL-PKGQITIGITSGAS 355 (364)
Q Consensus 297 ~rL~eia~~~~~~t~~Ie~~~eL~~~~~~~~~~-~~~~~~~~~~wl-~~~~~~VGITAGAS 355 (364)
.+.+.+.+.+.|...+.+...-+....+.... ..|.. --++| ..|+++||+..|..
T Consensus 138 -~~~~~l~~~~iPvV~i~~~~~~~~~~~V~~D~~~~~~~--a~~~L~~~G~~~I~~i~~~~ 195 (344)
T 3kjx_A 138 -AARAMLDAAGIPVVEIMDSDGKPVDAMVGISHRRAGRE--MAQAILKAGYRRIGFMGTKM 195 (344)
T ss_dssp -HHHHHHHHCSSCEEEEEECSSCCSSEEEEECHHHHHHH--HHHHHHHHTCCSCCEEESST
T ss_pred -HHHHHHHhCCCCEEEEeCCCCCCCCCEEEECcHHHHHH--HHHHHHHCCCCeEEEEecCc
Confidence 56667778899998884322211111111100 11111 11222 13788999988864
No 132
>1ma3_A SIR2-AF2, transcriptional regulatory protein, SIR2 family; enzyme-substrate complex, protein binding, transcription; HET: ALY MES; 2.00A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1s7g_A* 1yc2_A*
Probab=31.32 E-value=45 Score=30.59 Aligned_cols=56 Identities=20% Similarity=0.274 Sum_probs=34.2
Q ss_pred ccccccccccHHHHHHHHHHHHhhhhCCCEEEEEcCCCCc---hhHHHHHHHHhhCCCeEEeCC
Q 017886 255 EHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSS---NTSHLQEIAEDRGIPSYWIDS 315 (364)
Q Consensus 255 ~~~~v~nTIC~AT~~RQ~a~~eLa~~~vD~miVVGGknSS---NT~rL~eia~~~~~~t~~Ie~ 315 (364)
+++..|+.-=... .-+.+. +.. .++|++||||- |- -..+|...++..|.+.+.|.-
T Consensus 160 P~Vv~FgE~lp~~-~~~~a~-~~~-~~adl~lviGT--Sl~V~P~~~l~~~a~~~g~~~i~iN~ 218 (253)
T 1ma3_A 160 PRVVLFGEPLPQR-TLFEAI-EEA-KHCDAFMVVGS--SLVVYPAAELPYIAKKAGAKMIIVNA 218 (253)
T ss_dssp EEECCBTSBCCHH-HHHHHH-HHH-HHCSEEEEESC--CSCEETGGGHHHHHHHHTCEEEEEES
T ss_pred ceEEEeCCCCCHH-HHHHHH-HHH-HhCCEEEEECC--CceeccHHHHHHHHHHcCCeEEEEeC
Confidence 3455555532211 112333 444 36899999994 42 345788889888888777754
No 133
>2f48_A Diphosphate--fructose-6-phosphate 1-phosphotransf; phosphotransfer, transferase; HET: FBP; 2.11A {Borrelia burgdorferi} SCOP: c.89.1.1 PDB: 1kzh_A*
Probab=30.73 E-value=31 Score=35.73 Aligned_cols=54 Identities=22% Similarity=0.341 Sum_probs=36.3
Q ss_pred HHHHHHHHHHhhhhCCCEEEEEcCCCCch-hHHHHHHHHhhCCCeEEeCCCCccC
Q 017886 267 TQERQDAMYKMVEEKVDLILVVGGWNSSN-TSHLQEIAEDRGIPSYWIDSEKRIG 320 (364)
Q Consensus 267 T~~RQ~a~~eLa~~~vD~miVVGGknSSN-T~rL~eia~~~~~~t~~Ie~~~eL~ 320 (364)
...|+++++.|-.-.+|.+|||||-.|-. ..+|.+.+++.+...-.|.=+.-||
T Consensus 152 ~e~~~~~~~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~~~~i~vIGiPkTID 206 (555)
T 2f48_A 152 EEHYNKALFVAKENNLNAIIIIGGDDSNTNAAILAEYFKKNGENIQVIGVPKTID 206 (555)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEEESHHHHHHHHHHHHHHHHTTCCCEEEEEEEETT
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCcHHHHHHHHHHHHHHhCCCCcEEEeccccC
Confidence 34677777777545799999999998844 5588888877664333333334343
No 134
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=30.50 E-value=2.8e+02 Score=24.30 Aligned_cols=124 Identities=19% Similarity=0.166 Sum_probs=65.6
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHH-HHHHHhhhhCCCEEEEEcCCCCchh
Q 017886 218 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSNT 296 (364)
Q Consensus 218 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ-~a~~eLa~~~vD~miVVGGknSSNT 296 (364)
..|+++... ++-.-|..+.+-+.+...+. + -++.++++ .....+| +.++.|.+..+|.+|+.+...+
T Consensus 17 ~~Igvi~~~-~~~~~~~~~~~gi~~~a~~~-g-----~~~~~~~~--~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~--- 84 (289)
T 2fep_A 17 TTVGVIIPD-ISSIFYSELARGIEDIATMY-K-----YNIILSNS--DQNMEKELHLLNTMLGKQVDGIVFMGGNIT--- 84 (289)
T ss_dssp CEEEEEESC-TTSHHHHHHHHHHHHHHHHT-T-----CEEEEEEC--TTCHHHHHHHHHHHHHTTCSEEEECCSCCC---
T ss_pred CeEEEEeCC-CCCchHHHHHHHHHHHHHHc-C-----CEEEEEeC--CCCHHHHHHHHHHHHhCCCCEEEEecCCCC---
Confidence 579988864 34456777777776643322 2 22333332 2223344 3445555568999999886433
Q ss_pred HHHHHHHHhhCCCeEEeCCCCccCCCCcchhhh-ccchhhhhcccC-CCCCCEEEEEeCCC
Q 017886 297 SHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKL-MHGELVEKENWL-PKGQITIGITSGAS 355 (364)
Q Consensus 297 ~rL~eia~~~~~~t~~Ie~~~eL~~~~~~~~~~-~~~~~~~~~~wl-~~~~~~VGITAGAS 355 (364)
...++.+.+.+.|...+.+..+-+....+.... ..|.. --++| ..|.++||+-.|..
T Consensus 85 ~~~~~~l~~~~iPvV~~~~~~~~~~~~~V~~D~~~~g~~--a~~~L~~~G~~~I~~i~~~~ 143 (289)
T 2fep_A 85 DEHVAEFKRSPVPIVLAASVEEQEETPSVAIDYEQAIYD--AVKLLVDKGHTDIAFVSGPM 143 (289)
T ss_dssp HHHHHHHHHSSSCEEEESCCCTTCCSCEEECCHHHHHHH--HHHHHHHTTCSSEEEEESCT
T ss_pred HHHHHHHHhcCCCEEEEccccCCCCCCEEEECcHHHHHH--HHHHHHHCCCCeEEEEeCCc
Confidence 233444457789999998753211101111110 11111 11222 13789999998864
No 135
>2xbl_A Phosphoheptose isomerase; capsule; HET: M7P PGE PG4; 1.62A {Burkholderia pseudomallei} PDB: 2x3y_A
Probab=30.48 E-value=81 Score=26.52 Aligned_cols=39 Identities=13% Similarity=0.118 Sum_probs=32.1
Q ss_pred hCCCEEEEEcC-CCCchhHHHHHHHHhhCCCeEEeCCCCc
Q 017886 280 EKVDLILVVGG-WNSSNTSHLQEIAEDRGIPSYWIDSEKR 318 (364)
Q Consensus 280 ~~vD~miVVGG-knSSNT~rL~eia~~~~~~t~~Ie~~~e 318 (364)
.+-|++|+|.- -+|.++..+++.|++.|.++..|.+..+
T Consensus 115 ~~~d~vI~iS~SG~t~~~~~~~~~ak~~g~~vI~IT~~~~ 154 (198)
T 2xbl_A 115 NEGDVLIGYSTSGKSPNILAAFREAKAKGMTCVGFTGNRG 154 (198)
T ss_dssp CTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEECSCC
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEECCCC
Confidence 46799988864 6778999999999999999998887543
No 136
>2xzm_U Ribosomal protein L7AE containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_U
Probab=30.29 E-value=89 Score=25.84 Aligned_cols=42 Identities=10% Similarity=0.172 Sum_probs=33.5
Q ss_pred hhCCCEEEEEcCCCCchhH-HHHHHHHhhCCCeEEeCCCCccC
Q 017886 279 EEKVDLILVVGGWNSSNTS-HLQEIAEDRGIPSYWIDSEKRIG 320 (364)
Q Consensus 279 ~~~vD~miVVGGknSSNT~-rL~eia~~~~~~t~~Ie~~~eL~ 320 (364)
.+++-++|+-.+-.-.|+. +|-.+|++++.|.+++.+-.+|-
T Consensus 38 ~gka~LViiA~D~~p~~~~~~i~~lc~~~~Ip~~~v~sk~~LG 80 (126)
T 2xzm_U 38 AKQALFVCVAEDCDQGNYVKLVKALCAKNEIKYVSVPKRASLG 80 (126)
T ss_dssp HTCCSEEEEESSCCSTTHHHHHHHHHHHTTCCEEEESCSHHHH
T ss_pred cCCceEEEEeCCCChHHHHHHHHHHHHHhCCCEEEECCHHHHH
Confidence 3567787777777666885 56789999999999999988874
No 137
>1jdp_A NPR-C, atrial natriuretic peptide clearance receptor; hormone-receptor complex, natriuretic peptide receptor, ALLO activation, signaling protein; HET: NDG NAG; 2.00A {Homo sapiens} SCOP: c.93.1.1 PDB: 1jdn_A* 1yk0_A* 1yk1_A*
Probab=30.23 E-value=33 Score=32.64 Aligned_cols=56 Identities=9% Similarity=0.103 Sum_probs=38.5
Q ss_pred cccccccccHHHHHHHHHHHHhhhh-CCCEEEEEcCCCCchhHHHHHHHHhhCCCeEE
Q 017886 256 HFISFNTICDATQERQDAMYKMVEE-KVDLILVVGGWNSSNTSHLQEIAEDRGIPSYW 312 (364)
Q Consensus 256 ~~~v~nTIC~AT~~RQ~a~~eLa~~-~vD~miVVGGknSSNT~rL~eia~~~~~~t~~ 312 (364)
++.+.|+-|... --+..+..++.. +-.+..|||+..|+.+..++.++...+.|.+-
T Consensus 57 ~~~~~D~~~~~~-a~~~~~~~~~~~~~~~v~aiiG~~~S~~~~~v~~~~~~~~ip~is 113 (441)
T 1jdp_A 57 QVAYEDSDCGNR-ALFSLVDRVAAARGAKPDLILGPVCEYAAAPVARLASHWDLPMLS 113 (441)
T ss_dssp EEEEEECTTSTH-HHHHHHHHHHHTTTCCCSEEECCCSHHHHHHHHHHHHHHTCCEEE
T ss_pred EEEEecCCCchh-HHHHHHHHHHhhccCCceEEECCCchhhHHHHHHHHhhcCCcEEc
Confidence 456789999875 222333333311 11466788999999999999999999988653
No 138
>1m2k_A Silent information regulator 2; protein-ligand complex, gene regulation; HET: APR; 1.47A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1m2g_A* 1m2h_A* 1m2j_A* 1m2n_A* 1ici_A*
Probab=30.21 E-value=51 Score=30.14 Aligned_cols=34 Identities=32% Similarity=0.459 Sum_probs=25.4
Q ss_pred hCCCEEEEEcCCCCc---hhHHHHHHHHhhCCCeEEeCC
Q 017886 280 EKVDLILVVGGWNSS---NTSHLQEIAEDRGIPSYWIDS 315 (364)
Q Consensus 280 ~~vD~miVVGGknSS---NT~rL~eia~~~~~~t~~Ie~ 315 (364)
.++|++||||- |- -..+|...++..|.+.+.|.-
T Consensus 176 ~~adlllviGT--Sl~V~P~~~l~~~a~~~g~~~i~IN~ 212 (249)
T 1m2k_A 176 ERADVIIVAGT--SAVVQPAASLPLIVKQRGGAIIEINP 212 (249)
T ss_dssp HHCSEEEEESC--CSCSTTGGGHHHHHHHTTCEEEEECS
T ss_pred hcCCEEEEEcc--CCCccchHHHHHHHHHcCCeEEEEeC
Confidence 36899999994 32 235788889888888877764
No 139
>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}
Probab=30.20 E-value=2.6e+02 Score=25.66 Aligned_cols=106 Identities=10% Similarity=0.065 Sum_probs=63.5
Q ss_pred ceEEEEeCCCCCcccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHHcCcEEecCCccccccccc-cCCCEEEE
Q 017886 24 NVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVV-NKGDVVVL 102 (364)
Q Consensus 24 ~mkI~lA~~~GFC~GV~RAi~~a~~~~~~~~~~~vy~lG~iIHN~~Vv~~L~~~Gv~~v~~~~~~~~~~~l-~~g~~VII 102 (364)
.|+|-+. ..|. +|- -+|...++. +-+|+.+. .|+...+.|.+.|+.+.++ ++++ ..-| +||
T Consensus 31 ~~~I~iI-G~G~-mG~----~~a~~l~~~--G~~V~~~d---r~~~~~~~l~~~g~~~~~~------~~e~~~~aD-vVi 92 (320)
T 4dll_A 31 ARKITFL-GTGS-MGL----PMARRLCEA--GYALQVWN---RTPARAASLAALGATIHEQ------ARAAARDAD-IVV 92 (320)
T ss_dssp CSEEEEE-CCTT-THH----HHHHHHHHT--TCEEEEEC---SCHHHHHHHHTTTCEEESS------HHHHHTTCS-EEE
T ss_pred CCEEEEE-CccH-HHH----HHHHHHHhC--CCeEEEEc---CCHHHHHHHHHCCCEeeCC------HHHHHhcCC-EEE
Confidence 3677655 2232 332 244444443 23577664 5888999999999988764 3333 3345 444
Q ss_pred cCCCCCHHHHHHHH--------hcCCcEEeccCchhHHHHHHHHHHhhCCCeE
Q 017886 103 PAFGAAVEEMVTLN--------NKNVQIVDTTCPWVSKVWTSVEKHKKGDYTS 147 (364)
Q Consensus 103 rAHGv~~~v~~~l~--------~~g~~iiDaTCP~V~kv~~~v~~~~~~Gy~i 147 (364)
-+=..+..+.+.+. ..|..|||.+=-.........+.+.+.|-..
T Consensus 93 ~~vp~~~~~~~v~~~~~~~~~l~~~~~vi~~st~~~~~~~~~~~~~~~~g~~~ 145 (320)
T 4dll_A 93 SMLENGAVVQDVLFAQGVAAAMKPGSLFLDMASITPREARDHAARLGALGIAH 145 (320)
T ss_dssp ECCSSHHHHHHHHTTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEE
T ss_pred EECCCHHHHHHHHcchhHHhhCCCCCEEEecCCCCHHHHHHHHHHHHHcCCEE
Confidence 44444444444442 4678899988766676777777777777553
No 140
>2y8u_A Chitin deacetylase; hydrolase; 1.99A {Emericella nidulans}
Probab=30.02 E-value=2.9e+02 Score=24.42 Aligned_cols=27 Identities=11% Similarity=0.060 Sum_probs=21.1
Q ss_pred ceEEecccccCHHHHHHHHHcCcEEec
Q 017886 57 KIWITNEIIHNPTVNKRLEEMAVQNIP 83 (364)
Q Consensus 57 ~vy~lG~iIHN~~Vv~~L~~~Gv~~v~ 83 (364)
..|..----.|+.+.+.|++.|..++.
T Consensus 125 ~~fr~P~G~~~~~~~~~l~~~G~~~~~ 151 (230)
T 2y8u_A 125 AYMRPPYLETNELVLQVMRDLDYRVIS 151 (230)
T ss_dssp SEECCGGGCCCHHHHHHHHHTTCEEEC
T ss_pred cEEECCCCCCCHHHHHHHHHcCCEEEE
Confidence 345544446799999999999999885
No 141
>1vb5_A Translation initiation factor EIF-2B; 2.20A {Pyrococcus horikoshii} SCOP: c.124.1.5
Probab=29.98 E-value=61 Score=30.21 Aligned_cols=57 Identities=11% Similarity=0.152 Sum_probs=40.3
Q ss_pred cCCCEEEEcCCCCCH---HHHHHHHhcC--CcE-EeccCchhHHHHHHHHHHhhCCCeEEEEecCC
Q 017886 95 NKGDVVVLPAFGAAV---EEMVTLNNKN--VQI-VDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYS 154 (364)
Q Consensus 95 ~~g~~VIIrAHGv~~---~v~~~l~~~g--~~i-iDaTCP~V~kv~~~v~~~~~~Gy~iIIiG~~~ 154 (364)
++|++|+ .||-+. .+...+.++| ++| ++=|-|+-.- +..+.+|.+.|-.+.+++|.-
T Consensus 108 ~~g~~Il--T~~~s~Tv~~~l~~a~~~~~~~~V~v~etrP~~qG-~~~a~~L~~~gI~vtli~dsa 170 (276)
T 1vb5_A 108 DDGDVII--THSFSSTVLEIIRTAKERKKRFKVILTESSPDYEG-LHLARELEFSGIEFEVITDAQ 170 (276)
T ss_dssp CTTEEEE--CCSCCHHHHHHHHHHHHTTCCEEEEEECCTTTTHH-HHHHHHHHHTTCCEEEECGGG
T ss_pred cCCCEEE--EeCCChHHHHHHHHHHHcCCeEEEEEeCCCcchhh-HHHHHHHHHCCCCEEEEcHHH
Confidence 4576554 255554 4555554434 444 7789999877 889999999999999999643
No 142
>1tk9_A Phosphoheptose isomerase 1; lipopolysaccharide biosynthesis, structural genomics, NYSGXRC, LPC1_camje, PSI, protein structure initiative; 2.10A {Campylobacter jejuni} SCOP: c.80.1.3
Probab=29.90 E-value=2.3e+02 Score=23.31 Aligned_cols=34 Identities=18% Similarity=0.204 Sum_probs=21.7
Q ss_pred ccCCCEE-EEcCCCCCHHHHHHH---HhcCCcEEeccC
Q 017886 94 VNKGDVV-VLPAFGAAVEEMVTL---NNKNVQIVDTTC 127 (364)
Q Consensus 94 l~~g~~V-IIrAHGv~~~v~~~l---~~~g~~iiDaTC 127 (364)
+.++|.| +|+.-|-++++.+.+ +++|.++|=-|+
T Consensus 108 ~~~~Dvvi~iS~sG~t~~~~~~~~~ak~~g~~vi~iT~ 145 (188)
T 1tk9_A 108 GNEKDVLIGISTSGKSPNVLEALKKAKELNMLCLGLSG 145 (188)
T ss_dssp CCTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEEE
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeC
Confidence 4567875 578889999876655 445554443343
No 143
>1yc5_A NAD-dependent deacetylase; SIR2, sirtuin, SIR2TM, SIRT1, nicotinamide, hydrolase; HET: ALY; 1.40A {Thermotoga maritima} SCOP: c.31.1.5 PDB: 2h2d_A* 2h2f_A 2h2g_A* 2h2h_A* 2h2i_A* 2h4f_A* 2h4j_A* 3d4b_A* 3d81_A* 3pdh_A* 2h4h_A* 3jr3_A* 2h59_A*
Probab=29.70 E-value=52 Score=29.98 Aligned_cols=56 Identities=16% Similarity=0.197 Sum_probs=34.4
Q ss_pred ccccccccccHHHHHHHHHHHHhhhhCCCEEEEEcCCCCc---hhHHHHHHHHhhCCCeEEeCC
Q 017886 255 EHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSS---NTSHLQEIAEDRGIPSYWIDS 315 (364)
Q Consensus 255 ~~~~v~nTIC~AT~~RQ~a~~eLa~~~vD~miVVGGknSS---NT~rL~eia~~~~~~t~~Ie~ 315 (364)
+++..|+.-=... .-+.+...+ .++|++||||- |- -..+|...++..|.+.+.|.-
T Consensus 157 P~vv~FgE~lp~~-~~~~a~~~~--~~adl~lviGT--Sl~V~P~~~l~~~a~~~g~~~i~IN~ 215 (246)
T 1yc5_A 157 PNIVFFGENLPQD-ALREAIGLS--SRASLMIVLGS--SLVVYPAAELPLITVRSGGKLVIVNL 215 (246)
T ss_dssp EEECCBTSBCCHH-HHHHHHHHH--HHCSEEEEESC--CSCEETGGGHHHHHHHHTCEEEEECS
T ss_pred cceEECCCCCCHH-HHHHHHHHH--hcCCEEEEECC--CCcchhHHHHHHHHHHcCCeEEEEeC
Confidence 3555555532211 123344444 36899999994 42 345788889888888887764
No 144
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=29.66 E-value=2.3e+02 Score=24.62 Aligned_cols=119 Identities=15% Similarity=0.064 Sum_probs=64.3
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHHHhhhccccccccc-ccccccccHHHHHHHHH-HHHhhhhCCCEEEEEcCCCCch
Q 017886 218 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEH-FISFNTICDATQERQDA-MYKMVEEKVDLILVVGGWNSSN 295 (364)
Q Consensus 218 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~-~~v~nTIC~AT~~RQ~a-~~eLa~~~vD~miVVGGknSSN 295 (364)
..|+++.... +-.-|.++.+-+.+...+. +-+ +.++++- ...++|.. +..|.+..+|.+|+.+ +.
T Consensus 11 ~~Igvi~~~~-~~~~~~~~~~gi~~~a~~~------g~~~~~~~~~~--~~~~~~~~~~~~l~~~~vdgiIi~~----~~ 77 (277)
T 3hs3_A 11 KMIGIIIPDL-NNRFYAQIIDGIQEVIQKE------GYTALISFSTN--SDVKKYQNAIINFENNNVDGIITSA----FT 77 (277)
T ss_dssp CEEEEEESCT-TSHHHHHHHHHHHHHHHHT------TCEEEEEECSS--CCHHHHHHHHHHHHHTTCSEEEEEC----CC
T ss_pred CEEEEEeCCC-CChhHHHHHHHHHHHHHHC------CCCEEEEEeCC--CChHHHHHHHHHHHhCCCCEEEEcc----hH
Confidence 5799988654 4456777777776643332 223 3333222 22344433 4445456899999998 11
Q ss_pred hHHHHHHHHhhCCCeEEeCCC-CccCCCCcchhhh-ccchhhhhcccCCCCCCEEEEEeCCCC
Q 017886 296 TSHLQEIAEDRGIPSYWIDSE-KRIGPGNKIAYKL-MHGELVEKENWLPKGQITIGITSGAST 356 (364)
Q Consensus 296 T~rL~eia~~~~~~t~~Ie~~-~eL~~~~~~~~~~-~~~~~~~~~~wl~~~~~~VGITAGAST 356 (364)
++-+.+.+.|...+++. -+-..- .+.... ..|..-- ++|-.|.++||+-.|...
T Consensus 78 ----~~~~~~~~iPvV~~~~~~~~~~~~-~V~~D~~~~g~~a~--~~L~~G~~~I~~i~~~~~ 133 (277)
T 3hs3_A 78 ----IPPNFHLNTPLVMYDSANINDDIV-RIVSNNTKGGKESI--KLLSKKIEKVLIQHWPLS 133 (277)
T ss_dssp ----CCTTCCCSSCEEEESCCCCCSSSE-EEEECHHHHHHHHH--HTSCTTCCEEEEEESCTT
T ss_pred ----HHHHHhCCCCEEEEcccccCCCCE-EEEEChHHHHHHHH--HHHHhCCCEEEEEeCCCc
Confidence 22345678999999876 221110 011110 2222211 222158999999988754
No 145
>3v7q_A Probable ribosomal protein YLXQ; L7AE superfamily, K-turn binding, K-turn RNA, hypothetical R protein, RNA binding protein; HET: CIT; 1.55A {Bacillus subtilis}
Probab=29.66 E-value=57 Score=25.67 Aligned_cols=41 Identities=15% Similarity=0.281 Sum_probs=30.1
Q ss_pred hCCCEEEEEcCCCCchhHHHHHHHHhhCCCeEEeCCCCccC
Q 017886 280 EKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIG 320 (364)
Q Consensus 280 ~~vD~miVVGGknSSNT~rL~eia~~~~~~t~~Ie~~~eL~ 320 (364)
+++-++|+-.+-...-.++|-..|+..+.|.+++.|-.||-
T Consensus 34 gka~lViiA~D~~~~~~~~i~~~c~~~~vp~~~~~s~~eLG 74 (101)
T 3v7q_A 34 ARAKLVLLTEDASSNTAKKVTDKCNYYKVPYKKVESRAVLG 74 (101)
T ss_dssp TCCSEEEEETTSCHHHHHHHHHHHHHTTCCEEEESCHHHHH
T ss_pred CceeEEEEeccccccchhhhcccccccCCCeeeechHHHHH
Confidence 56666665555544444477788999999999999988885
No 146
>1ny1_A Probable polysaccharide deacetylase PDAA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium; 1.80A {Bacillus subtilis} SCOP: c.6.2.3 PDB: 1w17_A 1w1b_1 1w1a_1
Probab=29.61 E-value=2.5e+02 Score=24.88 Aligned_cols=27 Identities=11% Similarity=-0.001 Sum_probs=21.0
Q ss_pred ceEEecccccCHHHHHHHHHcCcEEec
Q 017886 57 KIWITNEIIHNPTVNKRLEEMAVQNIP 83 (364)
Q Consensus 57 ~vy~lG~iIHN~~Vv~~L~~~Gv~~v~ 83 (364)
+.|..----.|+.+.+.|+++|..++.
T Consensus 137 ~~fr~P~G~~~~~~~~~l~~~G~~~v~ 163 (240)
T 1ny1_A 137 LYLRPPRGVFSEYVLKETKRLGYQTVF 163 (240)
T ss_dssp CEECCGGGEECHHHHHHHHHTTCEEBC
T ss_pred cEEeCCCCCCCHHHHHHHHHcCCEEEE
Confidence 345554456799999999999999875
No 147
>4a3s_A 6-phosphofructokinase; transferase, glycolysis, degradosome; 2.30A {Bacillus subtilis} PDB: 6pfk_A 3u39_A 3pfk_A 4pfk_A* 1mto_A*
Probab=29.01 E-value=67 Score=30.71 Aligned_cols=47 Identities=17% Similarity=0.322 Sum_probs=32.4
Q ss_pred HHHHHHHHhhhhCCCEEEEEcCCCCchhHHHHHHHHhhCCCeEEeCCCCccC
Q 017886 269 ERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIG 320 (364)
Q Consensus 269 ~RQ~a~~eLa~~~vD~miVVGGknSSNT~rL~eia~~~~~~t~~Ie~~~eL~ 320 (364)
.|++++..|-....|.+++|||-.|-.+... + .+.+.+...| |+-||
T Consensus 81 ~~~~~~~~l~~~~Id~L~~IGGdgS~~~a~~--l-~~~~i~vigi--PkTID 127 (319)
T 4a3s_A 81 GREKGIANLKKLGIEGLVVIGGDGSYMGAKK--L-TEHGFPCVGV--PGTID 127 (319)
T ss_dssp HHHHHHHHHHHHTCCEEEEEECTTHHHHHHH--H-HHTTCCEEEE--EEETT
T ss_pred HHHHHHHHHHHcCCCEEEEeCCcHHHHHHHH--H-hccCCcEEEe--ecccc
Confidence 5666666676567999999999888766543 2 3577787665 34444
No 148
>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1
Probab=28.94 E-value=62 Score=30.29 Aligned_cols=63 Identities=13% Similarity=0.121 Sum_probs=37.2
Q ss_pred CCCEEEEEcCCCCchhHHHHHHHHhh---CCCeEEeCCCCccCCCCcchhhhccchhhhhcccCCCCC-CEEEEEeCCCC
Q 017886 281 KVDLILVVGGWNSSNTSHLQEIAEDR---GIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPKGQ-ITIGITSGAST 356 (364)
Q Consensus 281 ~vD~miVVGGknSSNT~rL~eia~~~---~~~t~~Ie~~~eL~~~~~~~~~~~~~~~~~~~~wl~~~~-~~VGITAGAST 356 (364)
.+|++|+.-|-.. -..++++.|++. +.+.-.+++++.-+. -+ -+.+..+. -.||||+|..+
T Consensus 106 ~adlViaat~d~~-~n~~I~~~Ar~~f~~~i~VNvvd~pel~~f----~~----------Pa~~~~g~~l~IaIST~Gks 170 (274)
T 1kyq_A 106 AWYIIMTCIPDHP-ESARIYHLCKERFGKQQLVNVADKPDLCDF----YF----------GANLEIGDRLQILISTNGLS 170 (274)
T ss_dssp CEEEEEECCSCHH-HHHHHHHHHHHHHCTTSEEEETTCGGGBSE----EC----------CEEEEETTTEEEEEEESSSC
T ss_pred CeEEEEEcCCChH-HHHHHHHHHHHhcCCCcEEEECCCcccCee----Ee----------eeEEEeCCCEEEEEECCCCC
Confidence 4566665555332 346899999998 766655666543321 00 01221345 59999999888
Q ss_pred CH
Q 017886 357 PD 358 (364)
Q Consensus 357 P~ 358 (364)
|-
T Consensus 171 p~ 172 (274)
T 1kyq_A 171 PR 172 (274)
T ss_dssp HH
T ss_pred cH
Confidence 74
No 149
>3on1_A BH2414 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; HET: MSE; 1.65A {Bacillus halodurans}
Probab=28.85 E-value=59 Score=25.48 Aligned_cols=41 Identities=15% Similarity=0.257 Sum_probs=30.0
Q ss_pred hCCCEEEEEcCCCCchhHHHHHHHHhhCCCeEEeCCCCccC
Q 017886 280 EKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIG 320 (364)
Q Consensus 280 ~~vD~miVVGGknSSNT~rL~eia~~~~~~t~~Ie~~~eL~ 320 (364)
+++-++|+-.+-...-.++|-..|+..+.|.+++.|-.||-
T Consensus 33 gka~lViiA~D~~~~~~~~i~~~c~~~~ip~~~~~s~~eLG 73 (101)
T 3on1_A 33 GQVTLVILSSDAGIHTKKKLLDKCGSYQIPVKVVGNRQMLG 73 (101)
T ss_dssp TCCSEEEEETTSCHHHHHHHHHHHHHHTCCEEEESCHHHHH
T ss_pred CCCcEEEEeCCCCHHHHHHHHHHHHHcCCCEEEeCCHHHHH
Confidence 46666666555544444467788999999999999888885
No 150
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=28.70 E-value=3.2e+02 Score=24.48 Aligned_cols=124 Identities=15% Similarity=0.147 Sum_probs=65.0
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHH-HHHHHhhhhCCCEEEEEcCCCCchh
Q 017886 218 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSNT 296 (364)
Q Consensus 218 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ-~a~~eLa~~~vD~miVVGGknSSNT 296 (364)
..|+++.-. +.-.-|.++.+-+.+...+. + -++.+.++ ....++| +.++.|....+|.+|+.+...+ .
T Consensus 64 ~~Ig~i~~~-~~~~~~~~~~~gi~~~~~~~-g-----~~~~~~~~--~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~--~ 132 (332)
T 2o20_A 64 TTVGVILPT-ITSTYFAAITRGVDDIASMY-K-----YNMILANS--DNDVEKEEKVLETFLSKQVDGIVYMGSSLD--E 132 (332)
T ss_dssp CEEEEEESC-TTCHHHHHHHHHHHHHHHHT-T-----CEEEEEEC--TTCHHHHHHHHHHHHHTTCSEEEECSSCCC--H
T ss_pred CEEEEEeCC-CCCcHHHHHHHHHHHHHHHc-C-----CEEEEEEC--CCChHHHHHHHHHHHhCCCCEEEEeCCCCC--H
Confidence 578888754 34456777777776643322 1 22333322 2223444 3455555568999999886433 2
Q ss_pred HHHHHHHHhhCCCeEEeCCCCccCCCCcchhhh-ccchhhhhcccC-CCCCCEEEEEeCCC
Q 017886 297 SHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKL-MHGELVEKENWL-PKGQITIGITSGAS 355 (364)
Q Consensus 297 ~rL~eia~~~~~~t~~Ie~~~eL~~~~~~~~~~-~~~~~~~~~~wl-~~~~~~VGITAGAS 355 (364)
. .++.+.+.+.|...+++..+-+.-..+.... ..|.. --++| ..|.++||+-+|..
T Consensus 133 ~-~~~~l~~~~iPvV~~~~~~~~~~~~~V~~D~~~~~~~--a~~~L~~~G~~~I~~i~~~~ 190 (332)
T 2o20_A 133 K-IRTSLKNSRTPVVLVGTIDGDKEIPSVNIDYHLAAYQ--STKKLIDSGNKKIAYIMGSL 190 (332)
T ss_dssp H-HHHHHHHHCCCEEEESCCCTTSCSCEEECCHHHHHHH--HHHHHHHTTCSSEEEECSCT
T ss_pred H-HHHHHHhCCCCEEEEccccCCCCCCEEEeChHHHHHH--HHHHHHHCCCCeEEEEeCCc
Confidence 2 3344456789999998743211100111111 11111 11222 13789999998864
No 151
>3cpq_A 50S ribosomal protein L30E; RNA-protein, elongation factor, ribonucleoprotein, structural genomics, NPPSFA; 1.90A {Methanocaldococcus jannaschii}
Probab=28.40 E-value=55 Score=26.15 Aligned_cols=40 Identities=18% Similarity=0.288 Sum_probs=31.9
Q ss_pred hCCCEEEEEcCCCCchhH-HHHHHHHhhCCCeEEe-CCCCccC
Q 017886 280 EKVDLILVVGGWNSSNTS-HLQEIAEDRGIPSYWI-DSEKRIG 320 (364)
Q Consensus 280 ~~vD~miVVGGknSSNT~-rL~eia~~~~~~t~~I-e~~~eL~ 320 (364)
+++-++|+-.+- |.|+. +|-..|++++.|.|.+ .|-.||-
T Consensus 36 gka~lViiA~D~-~~~~~~~l~~~c~~~~Vp~~~~~~sk~eLG 77 (110)
T 3cpq_A 36 GEGKLVVLAGNI-PKDLEEDVKYYAKLSNIPVYQHKITSLELG 77 (110)
T ss_dssp TCCSEEEECTTC-BHHHHHHHHHHHHHTTCCEEECCSCHHHHH
T ss_pred CCceEEEEeCCC-CHHHHHHHHHHHHHcCCCEEEEcCCHHHHH
Confidence 567777777777 88887 5678899999998887 8888874
No 152
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}
Probab=28.28 E-value=36 Score=35.27 Aligned_cols=54 Identities=6% Similarity=0.013 Sum_probs=40.2
Q ss_pred cccccccccHHHHHHHHHHHHhhhhCCCEEEEEcCCCCchhHHHHHHHHhhCCCeE
Q 017886 256 HFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSY 311 (364)
Q Consensus 256 ~~~v~nTIC~AT~~RQ~a~~eLa~~~vD~miVVGGknSSNT~rL~eia~~~~~~t~ 311 (364)
++.+.|+-|.....-.+++.+|..+ ++..|||+..|+.+.-...++...+.|-+
T Consensus 35 ~~~~~D~~~~~~~~a~~~~~~l~~~--~V~aiiG~~~S~~~~a~~~i~~~~~iP~i 88 (823)
T 3kg2_A 35 TPHIDNLEVANSFAVTNAFCSQFSR--GVYAIFGFYDKKSVNTITSFCGTLHVSFI 88 (823)
T ss_dssp EEEEEEECTTCHHHHHHHHHHHHHT--TCSEEEECCCTTTHHHHHHHHHHTTCEEE
T ss_pred EEEEEEcCCCChHHHHHHHHHHHhc--CcEEEEcCCChhHHHHHHHHhhcCCCcee
Confidence 4557788884334444566666533 67778999999999999999999887754
No 153
>1jx6_A LUXP protein; protein-ligand complex, signaling protein; HET: AI2; 1.50A {Vibrio harveyi} SCOP: c.93.1.1 PDB: 1zhh_A* 2hj9_A*
Probab=28.03 E-value=3.3e+02 Score=24.36 Aligned_cols=90 Identities=11% Similarity=0.049 Sum_probs=47.4
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHHHhhhccccccccccccc--ccccHHHHHHH-HHHHHhhhhCCCEEEEEcCCCCc
Q 017886 218 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISF--NTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSS 294 (364)
Q Consensus 218 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~v~--nTIC~AT~~RQ-~a~~eLa~~~vD~miVVGGknSS 294 (364)
..|+++..+.+.-.-|.++.+-+.+...+. + -++.+. ++-......+| +.+..|.+..+|.+|+ .+. +.
T Consensus 44 ~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~-g-----~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi-~~~-~~ 115 (342)
T 1jx6_A 44 IKISVVYPGQQVSDYWVRNIASFEKRLYKL-N-----INYQLNQVFTRPNADIKQQSLSLMEALKSKSDYLIF-TLD-TT 115 (342)
T ss_dssp EEEEEEECCCSSCCHHHHHHHHHHHHHHHT-T-----CCEEEEEEECCTTCCHHHHHHHHHHHHHTTCSEEEE-CCS-SS
T ss_pred eEEEEEecCCcccHHHHHHHHHHHHHHHHc-C-----CeEEEEecCCCCccCHHHHHHHHHHHHhcCCCEEEE-eCC-hH
Confidence 478888765233445677777776543222 1 122222 11100123444 3455555568999999 432 22
Q ss_pred hhHHHHHHHHhhCCCeEEe-CC
Q 017886 295 NTSHLQEIAEDRGIPSYWI-DS 315 (364)
Q Consensus 295 NT~rL~eia~~~~~~t~~I-e~ 315 (364)
....+++.+.+.+.|...+ +.
T Consensus 116 ~~~~~~~~~~~~~ip~V~~~~~ 137 (342)
T 1jx6_A 116 RHRKFVEHVLDSTNTKLILQNI 137 (342)
T ss_dssp TTHHHHHHHHHHCSCEEEEETC
T ss_pred hHHHHHHHHHHcCCCEEEEecC
Confidence 2334455556678887666 55
No 154
>3tqv_A Nicotinate-nucleotide pyrophosphorylase; glycosyltransferase, transferase; 2.62A {Francisella tularensis subsp}
Probab=27.93 E-value=1.5e+02 Score=28.14 Aligned_cols=95 Identities=11% Similarity=0.093 Sum_probs=57.9
Q ss_pred ceEEEEeCCCCCcccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHHcCcEEec--CCccccccccc---cCCC
Q 017886 24 NVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIP--VEEGKKQFDVV---NKGD 98 (364)
Q Consensus 24 ~mkI~lA~~~GFC~GV~RAi~~a~~~~~~~~~~~vy~lG~iIHN~~Vv~~L~~~Gv~~v~--~~~~~~~~~~l---~~g~ 98 (364)
.|-.+...|.-||.|+..|++.+.+. .+..+|-+ -++|....+...+.|+..|. .- ..+++.+. ..+.
T Consensus 170 d~vlikdNHi~~~G~i~~Av~~ar~~---~~~~~IeV---Ev~tl~ea~eAl~aGaD~I~LDn~-~~~~l~~av~~~~~~ 242 (287)
T 3tqv_A 170 DAYLIKENHIRSAGGIAKAVTKAKKL---DSNKVVEV---EVTNLDELNQAIAAKADIVMLDNF-SGEDIDIAVSIARGK 242 (287)
T ss_dssp SSEEECTTTC----CHHHHHHHHHHH---CTTSCEEE---EESSHHHHHHHHHTTCSEEEEESC-CHHHHHHHHHHHTTT
T ss_pred cEEEEeHHHHHHhCCHHHHHHHHHhh---CCCCcEEE---EeCCHHHHHHHHHcCCCEEEEcCC-CHHHHHHHHHhhcCC
Confidence 46556678899999999999988654 23456666 57887766666667877664 11 00011110 1255
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCcEEec
Q 017886 99 VVVLPAFGAAVEEMVTLNNKNVQIVDT 125 (364)
Q Consensus 99 ~VIIrAHGv~~~v~~~l~~~g~~iiDa 125 (364)
..+.-|=|++++....+.+-|+.+|-.
T Consensus 243 v~ieaSGGIt~~~i~~~a~tGVD~Isv 269 (287)
T 3tqv_A 243 VALEVSGNIDRNSIVAIAKTGVDFISV 269 (287)
T ss_dssp CEEEEESSCCTTTHHHHHTTTCSEEEC
T ss_pred ceEEEECCCCHHHHHHHHHcCCCEEEE
Confidence 667777888888888887777777643
No 155
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=27.89 E-value=1.2e+02 Score=26.55 Aligned_cols=123 Identities=16% Similarity=0.144 Sum_probs=57.7
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHHHhhhccccccccccccc-ccccHHHHHHH-HHHHHhhhhCCCEEEEEcCCCCch
Q 017886 218 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISF-NTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSN 295 (364)
Q Consensus 218 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~v~-nTIC~AT~~RQ-~a~~eLa~~~vD~miVVGGknSSN 295 (364)
..|+++.-. ++-.-|..+.+-+.+...+. + -++.+. ++ ....++| +.++.|....+|.+|+.+...+.
T Consensus 9 ~~Ig~i~~~-~~~~~~~~~~~gi~~~a~~~-g-----~~~~~~~~~--~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~- 78 (290)
T 3clk_A 9 NVIAAVVSS-VRTNFAQQILDGIQEEAHKN-G-----YNLIIVYSG--SADPEEQKHALLTAIERPVMGILLLSIALTD- 78 (290)
T ss_dssp CEEEEECCC-CSSSHHHHHHHHHHHHHHTT-T-----CEEEEEC------------CHHHHHHSSCCSEEEEESCC----
T ss_pred CEEEEEeCC-CCChHHHHHHHHHHHHHHHc-C-----CeEEEEeCC--CCCHHHHHHHHHHHHhcCCCEEEEecccCCH-
Confidence 578888753 34445777777776543222 1 123222 22 1222333 34555555689999998764332
Q ss_pred hHHHHHHHHhhCCCeEEeCCCCccCCCCcchhhh-ccchhhhhcccC-CCCCCEEEEEeCCC
Q 017886 296 TSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKL-MHGELVEKENWL-PKGQITIGITSGAS 355 (364)
Q Consensus 296 T~rL~eia~~~~~~t~~Ie~~~eL~~~~~~~~~~-~~~~~~~~~~wl-~~~~~~VGITAGAS 355 (364)
.+++.+++.+.|...+.+..+-+ ...+.... ..|.. .-+|| ..|.++||+-.|.+
T Consensus 79 --~~~~~l~~~~iPvV~~~~~~~~~-~~~V~~D~~~~g~~--a~~~L~~~G~~~i~~i~~~~ 135 (290)
T 3clk_A 79 --DNLQLLQSSDVPYCFLSMGFDDD-RPFISSDDEDIGYQ--ATNLLINEGHRQIGIAGIDQ 135 (290)
T ss_dssp ---CHHHHHCC--CEEEESCC--CC-SCEEECCHHHHHHH--HHHHHHTTTCCSEEEESCCC
T ss_pred --HHHHHHHhCCCCEEEEcCCCCCC-CCEEEeChHHHHHH--HHHHHHHcCCCEEEEEeCCC
Confidence 33445556788999888743211 11111110 11111 11232 13788999988763
No 156
>3mq4_A Mglur7, metabotropic glutamate receptor 7; glutamate receptors, dimerization, glutamic acid BIN structural genomics, structural genomics consortium; HET: Z99; 2.80A {Homo sapiens} SCOP: c.93.1.0 PDB: 2e4z_A*
Probab=27.88 E-value=40 Score=32.97 Aligned_cols=32 Identities=22% Similarity=0.158 Sum_probs=27.3
Q ss_pred CCEEEEEcCCCCchhHHHHHHHHhhCCCeEEe
Q 017886 282 VDLILVVGGWNSSNTSHLQEIAEDRGIPSYWI 313 (364)
Q Consensus 282 vD~miVVGGknSSNT~rL~eia~~~~~~t~~I 313 (364)
-.++.|||+..|+.|..++.++...+.|..--
T Consensus 116 ~~v~aiiG~~~S~~s~ava~~~~~~~iP~Is~ 147 (481)
T 3mq4_A 116 EKVVGVIGASGSSVSIMVANILRLFQIPQISY 147 (481)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHTTTTCCEEES
T ss_pred CCcEEEEcCCCcHHHHHHHHHHHhCCCCEEcc
Confidence 35888999999999999999999998886543
No 157
>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C*
Probab=27.78 E-value=1.1e+02 Score=23.25 Aligned_cols=45 Identities=13% Similarity=-0.018 Sum_probs=29.6
Q ss_pred cCCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHHHHHHHhhh
Q 017886 225 QTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVE 279 (364)
Q Consensus 225 QTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ~a~~eLa~ 279 (364)
.+..+.++|+++++..+. + .-=+.++.+.|..-..=...+.+|+.
T Consensus 14 ~~~~t~~~f~~~l~~~~~----k------~vlv~F~a~wC~~C~~~~p~l~~l~~ 58 (116)
T 3qfa_C 14 KQIESKTAFQEALDAAGD----K------LVVVDFSATWCGPSKMIKPFFHSLSE 58 (116)
T ss_dssp BCCCCHHHHHHHHHHHTT----S------CEEEEEECTTCHHHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHHhcCC----C------EEEEEEECCCCHHHHHHHHHHHHHHH
Confidence 566677888877543211 1 11134789999998877788888873
No 158
>1wn2_A Peptidyl-tRNA hydrolase; riken structural genomics/proteomics initiative, structural genomics; 1.20A {Pyrococcus horikoshii} PDB: 2d3k_A
Probab=27.32 E-value=42 Score=27.68 Aligned_cols=39 Identities=26% Similarity=0.276 Sum_probs=30.2
Q ss_pred CEEEEEcCCCCchhHHHHHHHHhhCCCeEEeCCC--CccCC
Q 017886 283 DLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSE--KRIGP 321 (364)
Q Consensus 283 D~miVVGGknSSNT~rL~eia~~~~~~t~~Ie~~--~eL~~ 321 (364)
-.-+|+..+++.--..|.+-|++.|.+++.|.|+ -|+++
T Consensus 55 ~~Kvvlk~~~e~el~~l~~~a~~~gl~~~~i~DAG~Tei~~ 95 (121)
T 1wn2_A 55 QKKVVVKVESEEELFKLKAEAEKLGLPNALIRDAGLTEIPP 95 (121)
T ss_dssp CCEEEEEESSHHHHHHHHHHHHHTTCCEEEEECTTCTTSCT
T ss_pred CcEEEEecCCHHHHHHHHHHHHHCCCCEEEEEcCCccccCC
Confidence 3456677777777778888888999999999988 45555
No 159
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=27.29 E-value=2.5e+02 Score=25.62 Aligned_cols=124 Identities=15% Similarity=0.144 Sum_probs=63.7
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHHH-HHHHhhhhCCCEEEEEcCCCCchh
Q 017886 218 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQD-AMYKMVEEKVDLILVVGGWNSSNT 296 (364)
Q Consensus 218 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ~-a~~eLa~~~vD~miVVGGknSSNT 296 (364)
..|+++... ++-.-|.++.+-+.+...+. + -++.++++ ....++|. .+..|....+|.+|+.+...+
T Consensus 67 ~~Igvi~~~-~~~~~~~~~~~gi~~~a~~~-g-----~~~~~~~~--~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~--- 134 (348)
T 3bil_A 67 NTIGVIVPS-LINHYFAAMVTEIQSTASKA-G-----LATIITNS--NEDATTMSGSLEFLTSHGVDGIICVPNEEC--- 134 (348)
T ss_dssp -CEEEEESC-SSSHHHHHHHHHHHHHHHHT-T-----CCEEEEEC--TTCHHHHHHHHHHHHHTTCSCEEECCCGGG---
T ss_pred CEEEEEeCC-CCCcHHHHHHHHHHHHHHHc-C-----CEEEEEeC--CCCHHHHHHHHHHHHhCCCCEEEEeCCCCC---
Confidence 478888754 34456777777776643322 1 22333322 22234443 445555568999999875332
Q ss_pred HHHHHHHHhhCCCeEEeCCCCcc-CCCCcchhhh-ccchhhhhcccC-CCCCCEEEEEeCCC
Q 017886 297 SHLQEIAEDRGIPSYWIDSEKRI-GPGNKIAYKL-MHGELVEKENWL-PKGQITIGITSGAS 355 (364)
Q Consensus 297 ~rL~eia~~~~~~t~~Ie~~~eL-~~~~~~~~~~-~~~~~~~~~~wl-~~~~~~VGITAGAS 355 (364)
...++.+.+.+.|...++...+- ..-..+.... ..|..- -++| ..|.++||+-+|..
T Consensus 135 ~~~~~~l~~~~iPvV~i~~~~~~~~~~~~V~~D~~~~~~~a--~~~L~~~G~~~I~~i~~~~ 194 (348)
T 3bil_A 135 ANQLEDLQKQGMPVVLVDRELPGDSTIPTATSNPQPGIAAA--VELLAHNNALPIGYLSGPM 194 (348)
T ss_dssp HHHHHHHHHC-CCEEEESSCCSCC-CCCEEEEECHHHHHHH--HHHHHHTTCCSEEEECCCT
T ss_pred hHHHHHHHhCCCCEEEEcccCCCCCCCCEEEeChHHHHHHH--HHHHHHCCCCeEEEEeCCC
Confidence 24455556678999999874321 1100111110 111111 1222 13789999998864
No 160
>2yva_A DNAA initiator-associating protein DIAA; intermolecular disulfide bonding, putative phosphosugar BIND protein, DNAA binding protein; 1.85A {Escherichia coli}
Probab=27.23 E-value=99 Score=26.03 Aligned_cols=38 Identities=18% Similarity=0.160 Sum_probs=32.0
Q ss_pred hCCCEEEEEcC-CCCchhHHHHHHHHhhCCCeEEeCCCC
Q 017886 280 EKVDLILVVGG-WNSSNTSHLQEIAEDRGIPSYWIDSEK 317 (364)
Q Consensus 280 ~~vD~miVVGG-knSSNT~rL~eia~~~~~~t~~Ie~~~ 317 (364)
.+-|++|+|.- -+|.++.++++.|++.|.++..|.+..
T Consensus 108 ~~~DvvI~iS~SG~t~~~i~~~~~ak~~g~~vI~IT~~~ 146 (196)
T 2yva_A 108 HAGDVLLAISTRGNSRDIVKAVEAAVTRDMTIVALTGYD 146 (196)
T ss_dssp CTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEECTT
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 46799998854 778899999999999999999887754
No 161
>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}
Probab=26.96 E-value=1.5e+02 Score=26.60 Aligned_cols=83 Identities=8% Similarity=-0.033 Sum_probs=52.7
Q ss_pred CceEEecccccCHHHHHHHHHcCcEEecCCccccccccc-cCCCEEEEcCCCCCHHHHHHH---------HhcCCcEEec
Q 017886 56 EKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVV-NKGDVVVLPAFGAAVEEMVTL---------NNKNVQIVDT 125 (364)
Q Consensus 56 ~~vy~lG~iIHN~~Vv~~L~~~Gv~~v~~~~~~~~~~~l-~~g~~VIIrAHGv~~~v~~~l---------~~~g~~iiDa 125 (364)
-+|+.+. .|+...+.|.+.|+.+.++ ++++ ..-| |||-+=..++.+.+.+ -..|..|||.
T Consensus 25 ~~V~~~d---r~~~~~~~~~~~g~~~~~~------~~~~~~~ad-vvi~~v~~~~~~~~v~~~~~~l~~~l~~g~~vv~~ 94 (287)
T 3pdu_A 25 FDVTVWN---RNPAKCAPLVALGARQASS------PAEVCAACD-ITIAMLADPAAAREVCFGANGVLEGIGGGRGYIDM 94 (287)
T ss_dssp CCEEEEC---SSGGGGHHHHHHTCEECSC------HHHHHHHCS-EEEECCSSHHHHHHHHHSTTCGGGTCCTTCEEEEC
T ss_pred CeEEEEc---CCHHHHHHHHHCCCeecCC------HHHHHHcCC-EEEEEcCCHHHHHHHHcCchhhhhcccCCCEEEEC
Confidence 3577664 5888889999999988764 3333 2345 4444444444555444 1357788998
Q ss_pred cCchhHHHHHHHHHHhhCCCeEE
Q 017886 126 TCPWVSKVWTSVEKHKKGDYTSI 148 (364)
Q Consensus 126 TCP~V~kv~~~v~~~~~~Gy~iI 148 (364)
+--......+..+.+.+.|...+
T Consensus 95 st~~~~~~~~~~~~~~~~g~~~~ 117 (287)
T 3pdu_A 95 STVDDETSTAIGAAVTARGGRFL 117 (287)
T ss_dssp SCCCHHHHHHHHHHHHHTTCEEE
T ss_pred CCCCHHHHHHHHHHHHHcCCEEE
Confidence 87666666666666666776543
No 162
>1mio_B Nitrogenase molybdenum iron protein (beta chain); HET: HCA CFM CLP; 3.00A {Clostridium pasteurianum} SCOP: c.92.2.3
Probab=26.94 E-value=3.3e+02 Score=26.74 Aligned_cols=105 Identities=17% Similarity=0.133 Sum_probs=58.7
Q ss_pred ceEEEEeCCCCCcc----cHHHHHHHHHHHHhh---CCCCceEEecccccCH----HHHHHHHHcCcEEecC--------
Q 017886 24 NVKVKLAESYGFCW----GVERAVQIAYEARKQ---FPEEKIWITNEIIHNP----TVNKRLEEMAVQNIPV-------- 84 (364)
Q Consensus 24 ~mkI~lA~~~GFC~----GV~RAi~~a~~~~~~---~~~~~vy~lG~iIHN~----~Vv~~L~~~Gv~~v~~-------- 84 (364)
+..|+.+..-||.. |...|++...+.+.. .....|=++|.. +++ ++..-|+++|+.++-=
T Consensus 131 ~~pvi~v~tpgf~gs~~~G~~~a~~al~~~l~~~~~~~~~~VNilg~~-~~~~d~~eik~lL~~~Gi~v~~l~d~s~~ld 209 (458)
T 1mio_B 131 GKLVIHTNTPSYVGSHVTGFANMVQGIVNYLSENTGAKNGKINVIPGF-VGPADMREIKRLFEAMDIPYIMFPDTSGVLD 209 (458)
T ss_dssp TCEEEEECCCTTSSCHHHHHHHHHHHHHHHHCCCCSCCCSCEEEECCS-CCHHHHHHHHHHHHHHTCCEEESSCCTTTSS
T ss_pred CCeEEEEECCCCcccHHHHHHHHHHHHHHHHccccCCCCCcEEEECCC-CCHHHHHHHHHHHHHcCCcEEEecccccccc
Confidence 57888999999984 444555444333321 112468889876 333 4556678999998740
Q ss_pred ---------C----ccccccccccCCCE-EEEcCCCCCHHHHHHHHhc-CCcEEeccCchh
Q 017886 85 ---------E----EGKKQFDVVNKGDV-VVLPAFGAAVEEMVTLNNK-NVQIVDTTCPWV 130 (364)
Q Consensus 85 ---------~----~~~~~~~~l~~g~~-VIIrAHGv~~~v~~~l~~~-g~~iiDaTCP~V 130 (364)
. ...+++..++.... +++.. -.....-+.|+++ |+..+-...|+-
T Consensus 210 ~~~~~~~~~~~~gg~~~~ei~~~~~A~~niv~~~-~~~~~~A~~Le~~~GiP~~~~~~p~G 269 (458)
T 1mio_B 210 GPTTGEYKMYPEGGTKIEDLKDTGNSDLTLSLGS-YASDLGAKTLEKKCKVPFKTLRTPIG 269 (458)
T ss_dssp CCCCSSCCSSCSCSBCHHHHHTTSSCSEEEEESH-HHHHHHHHHHHHHSCCCEEEECCCBH
T ss_pred CcccCccceeCCCCCcHHHHHhhccCCEEEEEch-hhHHHHHHHHHHHhCCCEEecCCCcC
Confidence 1 11222333333222 33322 1224555666665 788888777874
No 163
>3k35_A NAD-dependent deacetylase sirtuin-6; rossmann fold, Zn-binding domain, structural genomics, struc genomics consortium, SGC, ADP-ribosylation; HET: APR; 2.00A {Homo sapiens}
Probab=26.92 E-value=82 Score=30.33 Aligned_cols=58 Identities=10% Similarity=0.117 Sum_probs=36.4
Q ss_pred ccccccccccHHHHHHHHHHHHhhhhCCCEEEEEcCCCC-chhHHHHHHHHhhCCCeEEeCC
Q 017886 255 EHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNS-SNTSHLQEIAEDRGIPSYWIDS 315 (364)
Q Consensus 255 ~~~~v~nTIC~AT~~RQ~a~~eLa~~~vD~miVVGGknS-SNT~rL~eia~~~~~~t~~Ie~ 315 (364)
+++.+|+.-=.. .+-+.+.+.+ .++|++||||..-. .=...|...+...|.+.+.|.-
T Consensus 183 PdVV~FGE~lP~--~~~~~a~~~~-~~aDllLViGTSL~V~Paa~l~~~a~~~G~~vviIN~ 241 (318)
T 3k35_A 183 DTILDWEDSLPD--RDLALADEAS-RNADLSITLGTSLQIRPSGNLPLATKRRGGRLVIVNL 241 (318)
T ss_dssp ECCCCTTCCCCH--HHHHHHHHHH-HTCSEEEEESCCCCSTTGGGHHHHHHHTTCEEEEECS
T ss_pred CCEEEccCcCCH--HHHHHHHHHH-hcCCEEEEEccCCCchhhhhhHHHHHhcCCEEEEECC
Confidence 455556554222 1223344455 47999999998432 2235788889889988887754
No 164
>2k6g_A Replication factor C subunit 1; protein, BRCT, DNA binding, activator, alternative splicing, ATP-binding, DNA replication, DNA- binding; NMR {Homo sapiens} PDB: 2k7f_A
Probab=26.64 E-value=1.8e+02 Score=23.30 Aligned_cols=60 Identities=12% Similarity=0.049 Sum_probs=41.1
Q ss_pred CCceEEeccccc-CHHH-HHHHHHcCcEEecCCccccccccccCC-CEEEEcCCCCCHHHHHHHHhcCCcEEe
Q 017886 55 EEKIWITNEIIH-NPTV-NKRLEEMAVQNIPVEEGKKQFDVVNKG-DVVVLPAFGAAVEEMVTLNNKNVQIVD 124 (364)
Q Consensus 55 ~~~vy~lG~iIH-N~~V-v~~L~~~Gv~~v~~~~~~~~~~~l~~g-~~VIIrAHGv~~~v~~~l~~~g~~iiD 124 (364)
+..+...|.|-+ ++.. .+.+++.|-.+.... ... +.||.-. ...+.-++.|++.|+.|||
T Consensus 35 G~~~v~TG~l~~~~R~e~~~~i~~~Gg~v~~sV---------SkkTd~LV~G~-~~g~sK~~kA~~lgI~Ii~ 97 (109)
T 2k6g_A 35 GLIFVITGVLESIERDEAKSLIERYGGKVTGNV---------SKKTNYLVMGR-DSGQSKSDKAAALGTKIID 97 (109)
T ss_dssp TCEEEEESBCSSCCHHHHHHHHHHTTCEEESSC---------CTTCCEEEECB-CCCHHHHHHHHHHTCEEEC
T ss_pred CCEEEEeeeCCCCCHHHHHHHHHHcCCEeeCcc---------cCCceEEEECC-CCChHHHHHHHHcCCeEEe
Confidence 457888899954 5544 455688899988753 222 3455443 3456778889999999997
No 165
>3ij5_A 3-deoxy-D-manno-octulosonate 8-phosphate phosphat; IDP022 hydrolase, lipopolysaccharide biosynthesis, magnesium, STRU genomics; 1.95A {Yersinia pestis}
Probab=26.62 E-value=1.9e+02 Score=25.16 Aligned_cols=68 Identities=7% Similarity=-0.087 Sum_probs=50.4
Q ss_pred HHHHHHHcCcEEecCCccccccccccCCCEEEEcCCCCCHHHHHHHHhcCCc-EEeccCchhHHHHHHHHHHhhCCCeEE
Q 017886 70 VNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQ-IVDTTCPWVSKVWTSVEKHKKGDYTSI 148 (364)
Q Consensus 70 Vv~~L~~~Gv~~v~~~~~~~~~~~l~~g~~VIIrAHGv~~~v~~~l~~~g~~-iiDaTCP~V~kv~~~v~~~~~~Gy~iI 148 (364)
.++.|+++|+.+.= + .|+ -.+.+...+++.|+. +++...|...-++...+++.-....++
T Consensus 84 ~L~~L~~~G~~l~I----------~-T~~--------~~~~~~~~l~~lgi~~~f~~~k~K~~~l~~~~~~lg~~~~~~~ 144 (211)
T 3ij5_A 84 GIRCLITSDIDVAI----------I-TGR--------RAKLLEDRANTLGITHLYQGQSDKLVAYHELLATLQCQPEQVA 144 (211)
T ss_dssp HHHHHHHTTCEEEE----------E-CSS--------CCHHHHHHHHHHTCCEEECSCSSHHHHHHHHHHHHTCCGGGEE
T ss_pred HHHHHHHCCCEEEE----------E-eCC--------CHHHHHHHHHHcCCchhhcccCChHHHHHHHHHHcCcCcceEE
Confidence 78889988886541 1 121 344567778888885 688888888888888888877788999
Q ss_pred EEecCCCc
Q 017886 149 IHGKYSHE 156 (364)
Q Consensus 149 IiG~~~Hp 156 (364)
.+||..+-
T Consensus 145 ~vGDs~nD 152 (211)
T 3ij5_A 145 YIGDDLID 152 (211)
T ss_dssp EEECSGGG
T ss_pred EEcCCHHH
Confidence 99998653
No 166
>1s5p_A NAD-dependent deacetylase; protein deacetylase, SIR2 homologue, hydrolase; HET: ALY; 1.96A {Escherichia coli} SCOP: c.31.1.5
Probab=26.56 E-value=56 Score=29.60 Aligned_cols=56 Identities=14% Similarity=0.243 Sum_probs=37.3
Q ss_pred ccccccccccHHHHHHHHHHHHhhhhCCCEEEEEcCCC-CchhHHHHHHHHhhCCCeEEeCC
Q 017886 255 EHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWN-SSNTSHLQEIAEDRGIPSYWIDS 315 (364)
Q Consensus 255 ~~~~v~nTIC~AT~~RQ~a~~eLa~~~vD~miVVGGkn-SSNT~rL~eia~~~~~~t~~Ie~ 315 (364)
+++..|+.- .. +.+.+.+.+ .++|++||||.-- -.-..+|...++..|.+...|.-
T Consensus 146 P~vv~FGE~-p~---~~~~a~~~~-~~adl~lviGTSl~V~Pa~~l~~~a~~~g~~~i~iN~ 202 (235)
T 1s5p_A 146 PHVVWFGEM-PL---GMDEIYMAL-SMADIFIAIGTSGHVYPAAGFVHEAKLHGAHTVELNL 202 (235)
T ss_dssp EEECCTTSC-CS---SHHHHHHHH-HHCSEEEEESCCTTEETGGGHHHHHHHTTCEEEEEES
T ss_pred CcEEEeCCC-HH---HHHHHHHHH-hcCCEEEEECcCCchhhHHHHHHHHHHcCCeEEEEEC
Confidence 456667665 32 233444454 4699999999742 22457899999888888877754
No 167
>2lbw_A H/ACA ribonucleoprotein complex subunit 2; L7AE, snoRNP, scaRNP, RNA binding protein; NMR {Saccharomyces cerevisiae} PDB: 2lbx_A
Probab=26.52 E-value=75 Score=25.88 Aligned_cols=41 Identities=24% Similarity=0.536 Sum_probs=30.4
Q ss_pred hCCCEEEEEcCCCCch-hHHHHHHHHhhCCCeEEeCCCCccC
Q 017886 280 EKVDLILVVGGWNSSN-TSHLQEIAEDRGIPSYWIDSEKRIG 320 (364)
Q Consensus 280 ~~vD~miVVGGknSSN-T~rL~eia~~~~~~t~~Ie~~~eL~ 320 (364)
+++-++|+-++-.... ..+|-.+|++++.|.+++.+-.+|-
T Consensus 35 gkakLViiA~D~~~~~~~~~l~~lc~~~~VP~~~v~sk~eLG 76 (121)
T 2lbw_A 35 GEKGLVVIAGDIWPADVISHIPVLCEDHSVPYIFIPSKQDLG 76 (121)
T ss_dssp SCCCEEEECTTCSCTTHHHHHHHHHHHTCCCEEECCCHHHHH
T ss_pred CCceEEEEeCCCCHHHHHHHHHHHHHhcCCcEEEECCHHHHH
Confidence 4566655555544433 6789999999999999999888774
No 168
>1tk9_A Phosphoheptose isomerase 1; lipopolysaccharide biosynthesis, structural genomics, NYSGXRC, LPC1_camje, PSI, protein structure initiative; 2.10A {Campylobacter jejuni} SCOP: c.80.1.3
Probab=26.21 E-value=1e+02 Score=25.71 Aligned_cols=38 Identities=11% Similarity=0.125 Sum_probs=31.4
Q ss_pred hCCCEEEEEcC-CCCchhHHHHHHHHhhCCCeEEeCCCC
Q 017886 280 EKVDLILVVGG-WNSSNTSHLQEIAEDRGIPSYWIDSEK 317 (364)
Q Consensus 280 ~~vD~miVVGG-knSSNT~rL~eia~~~~~~t~~Ie~~~ 317 (364)
.+-|++|+|.- -+|.++.++++.|++.|.++..|.+..
T Consensus 109 ~~~Dvvi~iS~sG~t~~~~~~~~~ak~~g~~vi~iT~~~ 147 (188)
T 1tk9_A 109 NEKDVLIGISTSGKSPNVLEALKKAKELNMLCLGLSGKG 147 (188)
T ss_dssp CTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEEEGG
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 46799999864 678899999999999998888887653
No 169
>1pea_A Amidase operon; gene regulator, receptor, binding protein; 2.10A {Pseudomonas aeruginosa} SCOP: c.93.1.1 PDB: 1qo0_A 1qnl_A
Probab=26.11 E-value=69 Score=29.63 Aligned_cols=96 Identities=11% Similarity=0.007 Sum_probs=55.7
Q ss_pred ceEEEEEcCCC-ChHHHHHHHHHHHHHHhhhc--cc-ccccccccccccccHHHHHHHHHHHHhhh-hCCCEEEEEcCCC
Q 017886 218 VKVGIANQTTM-LKGETEEIGKLVEKTMMRKF--GV-ENVNEHFISFNTICDATQERQDAMYKMVE-EKVDLILVVGGWN 292 (364)
Q Consensus 218 ~kv~vvsQTT~-~~~~~~~i~~~l~~~~~~~~--~~-~~~~~~~~v~nTIC~AT~~RQ~a~~eLa~-~~vD~miVVGGkn 292 (364)
.+|+++.-.|- ...-+..+..-+...+.+.- +. ....-++.+.|+-|...... +++++|.. .+||++ ||...
T Consensus 8 ~~IG~~~p~sg~~~~~~~~~~~g~~~a~~~~N~~ggi~G~~l~l~~~d~~~~~~~~~-~~~~~l~~~~~v~~i--ig~~~ 84 (385)
T 1pea_A 8 PLIGLLFSETGVTADIERSQRYGALLAVEQLNREGGVGGRPIETLSQDPGGDPDRYR-LCAEDFIRNRGVRFL--VGCYM 84 (385)
T ss_dssp CEEEEECCSSSTTHHHHHHHHHHHHHHHHHHHTTTTBTTBCCEEEEECCTTCHHHHH-HHHHHHHHTTCCCEE--EECCS
T ss_pred eEEEEEECCCCcchhcCHHHHHHHHHHHHHhccccCCCCeEEEEEEeCCCCCHHHHH-HHHHHHHhhCCcEEE--ECCCc
Confidence 47888765442 22334555555544332210 00 00112455677766654443 45566653 568876 56667
Q ss_pred CchhHHHHHHHHhhCCCeEEeCCC
Q 017886 293 SSNTSHLQEIAEDRGIPSYWIDSE 316 (364)
Q Consensus 293 SSNT~rL~eia~~~~~~t~~Ie~~ 316 (364)
|+.+..+.+++.+.+.|.+.+...
T Consensus 85 s~~~~~~~~~~~~~~iP~v~~~~~ 108 (385)
T 1pea_A 85 SHTRKAVMPVVERADALLCYPTPY 108 (385)
T ss_dssp HHHHHHHHHHHHHTTCEEEECSCC
T ss_pred hHHHHHHHHHHHhcCceEEECCcc
Confidence 777888899998888888777654
No 170
>1x92_A APC5045, phosphoheptose isomerase; midwest centre for structural genomics, SIS domain, A/B protein, lipopolysaccharide biosynthesis, PSI; HET: M7P; 2.30A {Pseudomonas aeruginosa} SCOP: c.80.1.3 PDB: 3bjz_A
Probab=26.03 E-value=1e+02 Score=26.13 Aligned_cols=38 Identities=21% Similarity=0.258 Sum_probs=31.7
Q ss_pred hCCCEEEEEc-CCCCchhHHHHHHHHhhCCCeEEeCCCC
Q 017886 280 EKVDLILVVG-GWNSSNTSHLQEIAEDRGIPSYWIDSEK 317 (364)
Q Consensus 280 ~~vD~miVVG-GknSSNT~rL~eia~~~~~~t~~Ie~~~ 317 (364)
.+-|++|+|- +-+|.++.++++.|++.|.++..|.+..
T Consensus 112 ~~~DvvI~iS~SG~t~~~i~~~~~ak~~g~~vI~IT~~~ 150 (199)
T 1x92_A 112 QPGDVLLAISTSGNSANVIQAIQAAHDREMLVVALTGRD 150 (199)
T ss_dssp CTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEECTT
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEECCC
Confidence 4679999885 4778999999999999999998887753
No 171
>3u7q_B Nitrogenase molybdenum-iron protein beta chain; multiple rossmann fold domains, reductase, nitrogen fixing, oxidoreductase; HET: HCA ICS 1CL CLF; 1.00A {Azotobacter vinelandii} SCOP: c.92.2.3 PDB: 1fp4_B* 1g21_B* 1g20_B* 1m1n_B* 1l5h_B* 1m1y_B* 1m34_B* 1n2c_B* 2afh_B* 2afi_B* 2afk_B* 2min_B* 3k1a_B* 3min_B*
Probab=25.45 E-value=2.6e+02 Score=28.27 Aligned_cols=105 Identities=14% Similarity=0.064 Sum_probs=58.4
Q ss_pred EEEEeCCCCC----cccHHHHHHHHHHHHhh--------CCCCceEEeccccc---C-HHHHHHHHHcCcEEecCCc---
Q 017886 26 KVKLAESYGF----CWGVERAVQIAYEARKQ--------FPEEKIWITNEIIH---N-PTVNKRLEEMAVQNIPVEE--- 86 (364)
Q Consensus 26 kI~lA~~~GF----C~GV~RAi~~a~~~~~~--------~~~~~vy~lG~iIH---N-~~Vv~~L~~~Gv~~v~~~~--- 86 (364)
.|..+..-|| ..|..+|++...+.+.. .....|-++|..-. | .++..-|+++|+.++--++
T Consensus 180 ~Vv~v~tpgf~Gs~~~G~~~a~~alv~~l~~~~~~~~~~~~~~~VNIig~~~~~~gD~~elkrlL~~~Gi~v~~lpd~s~ 259 (523)
T 3u7q_B 180 PVPFAHTPSFVGSHVTGWDNMFEGIARYFTLKSMDDKVVGSNKKINIVPGFETYLGNFRVIKRMLSEMGVGYSLLSDPEE 259 (523)
T ss_dssp CCCBCCCCTTSSCHHHHHHHHHHHHHHHHHGGGGGGCCTTTTCCEEEECCSCCCHHHHHHHHHHHHHTTCCEEESSCCTT
T ss_pred eEEEeeCCCCCCChhHHHHHHHHHHHHHhcccccccccCCCCCeEEEECCCCCChhHHHHHHHHHHHcCCeEEEecCchh
Confidence 4566777777 57888888766543321 11346999987522 1 3556667899998764110
Q ss_pred -----------------cccccccccCCCEEEEcCCCCCHHHHHHHHhc-CCcEEeccCchh
Q 017886 87 -----------------GKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNK-NVQIVDTTCPWV 130 (364)
Q Consensus 87 -----------------~~~~~~~l~~g~~VIIrAHGv~~~v~~~l~~~-g~~iiDaTCP~V 130 (364)
..+++..++.....|.-.+-.....-+.|+++ |+..+....|+-
T Consensus 260 ~ld~p~~~~~~~~~ggtt~~ei~~~~~A~~niv~~~~~~~~~A~~Le~~~GiP~i~~~~PiG 321 (523)
T 3u7q_B 260 VLDTPADGQFRMYAGGTTQEEMKDAPNALNTVLLQPWHLEKTKKFVEGTWKHEVPKLNIPMG 321 (523)
T ss_dssp TTSCCCSSCCCSCCCCBCHHHHHHGGGSSEEEESSGGGCHHHHHHHHHTSCCCCCCCCCSCH
T ss_pred cccccccccccccCCCCCHHHHHHhhcCcEEEEEccchHHHHHHHHHHHhCCCeeecCCcCC
Confidence 11122233322222222222234556666655 888887777773
No 172
>2bon_A Lipid kinase; DAG kinase, transferase; 1.90A {Escherichia coli} SCOP: e.52.1.2 PDB: 2jgr_A 2p1r_A
Probab=25.25 E-value=1.2e+02 Score=28.30 Aligned_cols=17 Identities=24% Similarity=0.224 Sum_probs=13.4
Q ss_pred hCCCEEEEEcCCCCchh
Q 017886 280 EKVDLILVVGGWNSSNT 296 (364)
Q Consensus 280 ~~vD~miVVGGknSSNT 296 (364)
..+|++||+||-.+=|.
T Consensus 81 ~~~d~vvv~GGDGTl~~ 97 (332)
T 2bon_A 81 FGVATVIAGGGDGTINE 97 (332)
T ss_dssp HTCSEEEEEESHHHHHH
T ss_pred cCCCEEEEEccchHHHH
Confidence 56899999999766443
No 173
>2e4u_A Metabotropic glutamate receptor 3; G-protein-coupled receptor, neuron, central nerve system, SI protein; HET: NAG GLU; 2.35A {Rattus norvegicus} PDB: 2e4v_A* 2e4w_A* 2e4x_A* 2e4y_A*
Probab=25.23 E-value=68 Score=31.93 Aligned_cols=31 Identities=23% Similarity=0.191 Sum_probs=27.1
Q ss_pred CCEEEEEcCCCCchhHHHHHHHHhhCCCeEE
Q 017886 282 VDLILVVGGWNSSNTSHLQEIAEDRGIPSYW 312 (364)
Q Consensus 282 vD~miVVGGknSSNT~rL~eia~~~~~~t~~ 312 (364)
-.++.|||+..|+.|..++.++...+.|.+-
T Consensus 116 ~~v~aviG~~~S~~s~~va~~~~~~~iP~Is 146 (555)
T 2e4u_A 116 LLIAGVIGGSYSSVSIQVANLLRLFQIPQIS 146 (555)
T ss_dssp CCEEEEEECSSHHHHHHHHHHHGGGTCCEEE
T ss_pred CceEEEECCCCcHHHHHHHHHHhCcCCceEe
Confidence 3588999999999999999999999888653
No 174
>3trj_A Phosphoheptose isomerase; lipopolysaccharide biosynthesis; 2.80A {Francisella tularensis subsp}
Probab=24.98 E-value=93 Score=27.00 Aligned_cols=38 Identities=21% Similarity=0.200 Sum_probs=31.6
Q ss_pred hCCCEEEEEc-CCCCchhHHHHHHHHhhCCCeEEeCCCC
Q 017886 280 EKVDLILVVG-GWNSSNTSHLQEIAEDRGIPSYWIDSEK 317 (364)
Q Consensus 280 ~~vD~miVVG-GknSSNT~rL~eia~~~~~~t~~Ie~~~ 317 (364)
.+-|++|+|. +-+|.++..+++.|++.|.++..|.+..
T Consensus 113 ~~~Dvvi~iS~SG~t~~~~~~~~~ak~~g~~vi~iT~~~ 151 (201)
T 3trj_A 113 NEDDILLVITTSGDSENILSAVEEAHDLEMKVIALTGGS 151 (201)
T ss_dssp CTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEEETT
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHCCCcEEEEECCC
Confidence 4679999995 4678888999999999999998887643
No 175
>2cc0_A Acetyl-xylan esterase; hydrolase, carbohydrate esterase; 1.6A {Streptomyces lividans} SCOP: c.6.2.3
Probab=24.92 E-value=3.2e+02 Score=23.17 Aligned_cols=95 Identities=7% Similarity=0.054 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHhhCCC-C-ceEEecccccCHHHHHHHHHcCcEEecCCcccccc------------ccccCCCEEEEcC
Q 017886 39 VERAVQIAYEARKQFPE-E-KIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQF------------DVVNKGDVVVLPA 104 (364)
Q Consensus 39 V~RAi~~a~~~~~~~~~-~-~vy~lG~iIHN~~Vv~~L~~~Gv~~v~~~~~~~~~------------~~l~~g~~VIIrA 104 (364)
+++=|..+.+++++..+ . +.|..----.|+.+.+.|++.|..++.-.-...++ ..+.+|++|++
T Consensus 77 ~~~ei~~~~~~l~~~~G~~~~~fr~P~G~~~~~~~~~~~~~G~~~v~w~~d~~Dw~~~~~~~i~~~~~~~~~g~IiL~-- 154 (195)
T 2cc0_A 77 MDSEISRTQQAIAGAGGGTPKLFRPPYGETNATLRSVEAKYGLTEVIWDVDSQDWNNASTDAIVQAVSRLGNGQVILM-- 154 (195)
T ss_dssp HHHHHHHHHHHHHHTTSCCCSEECCGGGCCCHHHHHHHHHTTCEECCCSEECCGGGTCCHHHHHHHHHTCCTTCEEEE--
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEECCCCCcCHHHHHHHHHCCCeEEEeccCCCccCCCCHHHHHHHHhCcCcCeEEEE--
Confidence 45555666666665322 2 35554445679999999999999987521000011 11223433332
Q ss_pred CCCCHHHHHHHHhcCCcEEeccCchhHHHHHHHHHHhhCCCeEEEEecC
Q 017886 105 FGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKY 153 (364)
Q Consensus 105 HGv~~~v~~~l~~~g~~iiDaTCP~V~kv~~~v~~~~~~Gy~iIIiG~~ 153 (364)
|..++. -+..+-.++..+.++||..+-+.+.
T Consensus 155 Hd~~~~------------------t~~al~~ii~~l~~~Gy~~v~l~~~ 185 (195)
T 2cc0_A 155 HDWPAN------------------TLAAIPRIAQTLAGKGLCSGMISPQ 185 (195)
T ss_dssp ESSCHH------------------HHHHHHHHHHHHHHTTEEECEECTT
T ss_pred CCCchh------------------HHHHHHHHHHHHHHCCCEEEEeCcc
Confidence 333221 3456777888899999999877654
No 176
>2xhz_A KDSD, YRBH, arabinose 5-phosphate isomerase; lipopolysaccharide biogenesis; 2.60A {Escherichia coli}
Probab=24.86 E-value=85 Score=26.09 Aligned_cols=38 Identities=16% Similarity=0.251 Sum_probs=30.9
Q ss_pred hCCCEEEEEcC-CCCchhHHHHHHHHhhCCCeEEeCCCC
Q 017886 280 EKVDLILVVGG-WNSSNTSHLQEIAEDRGIPSYWIDSEK 317 (364)
Q Consensus 280 ~~vD~miVVGG-knSSNT~rL~eia~~~~~~t~~Ie~~~ 317 (364)
.+-|++|+|.- -+|.++..+++.|++.|.++..|.+..
T Consensus 95 ~~~d~vI~iS~sG~t~~~~~~~~~ak~~g~~vi~IT~~~ 133 (183)
T 2xhz_A 95 TPQDVVIAISNSGESSEITALIPVLKRLHVPLICITGRP 133 (183)
T ss_dssp CTTCEEEEECSSSCCHHHHHHHHHHHTTTCCEEEEESCT
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHCCCCEEEEECCC
Confidence 35799888875 567788899999999999999998754
No 177
>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}
Probab=24.86 E-value=74 Score=31.18 Aligned_cols=123 Identities=11% Similarity=0.054 Sum_probs=66.9
Q ss_pred ccceEEEEeCCCCCcccHHHHHHHHHHHHhhCCCCceEEecc-cccCHHHHHHHHHcCcEEecCCccccccccccCC-CE
Q 017886 22 WGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNE-IIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKG-DV 99 (364)
Q Consensus 22 ~~~mkI~lA~~~GFC~GV~RAi~~a~~~~~~~~~~~vy~lG~-iIHN~~Vv~~L~~~Gv~~v~~~~~~~~~~~l~~g-~~ 99 (364)
+.+.+|.+..--| .|. | .|+-+.+. +-.|...-. -...+...+.|++.|+.+..... .+++.++ .-
T Consensus 7 ~~~k~v~viG~G~--sG~--s--~A~~l~~~--G~~V~~~D~~~~~~~~~~~~L~~~gi~~~~g~~----~~~~~~~~~d 74 (451)
T 3lk7_A 7 FENKKVLVLGLAR--SGE--A--AARLLAKL--GAIVTVNDGKPFDENPTAQSLLEEGIKVVCGSH----PLELLDEDFC 74 (451)
T ss_dssp TTTCEEEEECCTT--THH--H--HHHHHHHT--TCEEEEEESSCGGGCHHHHHHHHTTCEEEESCC----CGGGGGSCEE
T ss_pred cCCCEEEEEeeCH--HHH--H--HHHHHHhC--CCEEEEEeCCcccCChHHHHHHhCCCEEEECCC----hHHhhcCCCC
Confidence 3456777653322 232 2 24444443 234554322 01124466899999999875421 1222223 34
Q ss_pred EEEcCCCCCHH--HHHHHHhcCCcEEec--------cCchh---------HHHHHHHHHHhhCCCeEEEEecCCCc
Q 017886 100 VVLPAFGAAVE--EMVTLNNKNVQIVDT--------TCPWV---------SKVWTSVEKHKKGDYTSIIHGKYSHE 156 (364)
Q Consensus 100 VIIrAHGv~~~--v~~~l~~~g~~iiDa--------TCP~V---------~kv~~~v~~~~~~Gy~iIIiG~~~Hp 156 (364)
+||-+=|+|+. ..+.++++|+.|+.- ..|.+ +-..=++.-+...|+.+.+.|+-+-|
T Consensus 75 ~vv~spgi~~~~p~~~~a~~~gi~v~~~~e~~~~~~~~~~IaVTGTnGKTTTt~ml~~iL~~~g~~~~~~Gnig~~ 150 (451)
T 3lk7_A 75 YMIKNPGIPYNNPMVKKALEKQIPVLTEVELAYLVSESQLIGITGSNGKTTTTTMIAEVLNAGGQRGLLAGNIGFP 150 (451)
T ss_dssp EEEECTTSCTTSHHHHHHHHTTCCEECHHHHHHHHCCSEEEEEECSSCHHHHHHHHHHHHHHTTCCEEEEETSSSC
T ss_pred EEEECCcCCCCChhHHHHHHCCCcEEeHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHHhcCCCEEEeeecChh
Confidence 66677789864 677889999988721 12332 11222233355678888888876544
No 178
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=24.49 E-value=58 Score=28.57 Aligned_cols=36 Identities=25% Similarity=0.426 Sum_probs=27.5
Q ss_pred EEEEcCCCCchhHHHHHHHHhhCCCeEEeCCCCccCC
Q 017886 285 ILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGP 321 (364)
Q Consensus 285 miVVGGknSSNT~rL~eia~~~~~~t~~Ie~~~eL~~ 321 (364)
++|+||..|.=|.-=-+++.. |.+.++|.++.-.++
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT~~~~d~ 37 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQVLYIATSQILDD 37 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSSEEEEECCCC---
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCCeEEEecCCCCCH
Confidence 789999999998766667777 888888999765544
No 179
>2i2w_A Phosphoheptose isomerase; lipopolysaccharide biosynthesis; 1.95A {Escherichia coli} PDB: 2i22_A 1x94_A
Probab=24.41 E-value=95 Score=26.86 Aligned_cols=38 Identities=18% Similarity=0.268 Sum_probs=32.0
Q ss_pred hCCCEEEEEc-CCCCchhHHHHHHHHhhCCCeEEeCCCC
Q 017886 280 EKVDLILVVG-GWNSSNTSHLQEIAEDRGIPSYWIDSEK 317 (364)
Q Consensus 280 ~~vD~miVVG-GknSSNT~rL~eia~~~~~~t~~Ie~~~ 317 (364)
.+-|++|+|. +-+|.++..+++.|++.|.++.-|.+..
T Consensus 130 ~~~DvvI~iS~SG~t~~~i~~~~~ak~~G~~vIaIT~~~ 168 (212)
T 2i2w_A 130 REGDVLLGISTSGNSANVIKAIAAAREKGMKVITLTGKD 168 (212)
T ss_dssp CTTCEEEEECSSSCCHHHHHHHHHHHHHTCEEEEEEETT
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHCCCeEEEEECCC
Confidence 4679999886 4678999999999999999999997753
No 180
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=24.30 E-value=65 Score=28.27 Aligned_cols=124 Identities=6% Similarity=-0.038 Sum_probs=66.7
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHHH-HHHHhhhhCCCEEEEEcCCCCchh
Q 017886 218 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQD-AMYKMVEEKVDLILVVGGWNSSNT 296 (364)
Q Consensus 218 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ~-a~~eLa~~~vD~miVVGGknSSNT 296 (364)
..|+++....++-.-|.++.+-+.+...+. + -++.++++-- ..++|. .++.|.+..+|.+|+.+.. .+.
T Consensus 12 ~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~-g-----~~~~~~~~~~--~~~~~~~~~~~l~~~~vdgiIi~~~~--~~~ 81 (289)
T 3g85_A 12 PTIALYWSSDISVNIISRFLRGLQSKLAKQ-N-----YNYNVVICPY--KTDCLHLEKGISKENSFDAAIIANIS--NYD 81 (289)
T ss_dssp CEEEEEEETTSCGGGHHHHHHHHHHHHHHT-T-----TCSEEEEEEE--CTTCGGGCGGGSTTTCCSEEEESSCC--HHH
T ss_pred ceEEEEeccccchHHHHHHHHHHHHHHHHc-C-----CeEEEEecCC--CchhHHHHHHHHhccCCCEEEEecCC--ccc
Confidence 579999875566677888888887643332 2 2233332211 123333 3344445689999998653 222
Q ss_pred HHHHHHHHhhCCCeEEeCCCCccCCCCcchhhh-ccchhhhhcccC-CCCCCEEEEEeCCCC
Q 017886 297 SHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKL-MHGELVEKENWL-PKGQITIGITSGAST 356 (364)
Q Consensus 297 ~rL~eia~~~~~~t~~Ie~~~eL~~~~~~~~~~-~~~~~~~~~~wl-~~~~~~VGITAGAST 356 (364)
..+.+. .+.+.|...+++..+ .-.-+.... ..|.. .-++| ..|.++||+-.|.+.
T Consensus 82 ~~~~~~-~~~~iPvV~~~~~~~--~~~~V~~D~~~~~~~--a~~~L~~~G~~~i~~i~~~~~ 138 (289)
T 3g85_A 82 LEYLNK-ASLTLPIILFNRLSN--KYSSVNVDNYKMGEK--ASLLFAKKRYKSAAAILTESL 138 (289)
T ss_dssp HHHHHH-CCCSSCEEEESCCCS--SSEEEEECHHHHHHH--HHHHHHHTTCCBCEEEECCCS
T ss_pred HHHHHh-ccCCCCEEEECCCCC--CCCEEEeCHHHHHHH--HHHHHHHcCCCEEEEEeCCcc
Confidence 344443 356889999987532 211111100 11111 11222 247899999988654
No 181
>2i5i_A UPF0249 protein EF_3048; putative cellobiose-phosphate cleavage protein, structural G joint center for structural genomics, JCSG; HET: MSE; 1.70A {Enterococcus faecalis} SCOP: c.6.2.8
Probab=24.19 E-value=37 Score=31.36 Aligned_cols=25 Identities=24% Similarity=0.347 Sum_probs=20.6
Q ss_pred ceE-EEEeCCCCCcccHHHHHHHHHH
Q 017886 24 NVK-VKLAESYGFCWGVERAVQIAYE 48 (364)
Q Consensus 24 ~mk-I~lA~~~GFC~GV~RAi~~a~~ 48 (364)
+|+ |+-|.-+|+|.||-+||-.+.+
T Consensus 4 ~~~LIvnADDfGls~~vN~gI~~~~~ 29 (263)
T 2i5i_A 4 NKKLIINADDFGYTPAVTQGIIEAHK 29 (263)
T ss_dssp CCEEEEEEEEETSSHHHHHHHHHHHH
T ss_pred ccEEEEEcccCCCChhHHHHHHHHHH
Confidence 566 4668999999999999987754
No 182
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=24.19 E-value=1.2e+02 Score=24.13 Aligned_cols=72 Identities=14% Similarity=0.191 Sum_probs=47.9
Q ss_pred CCEEEEcCCCCCHHHHHHHHhcCCcE--EeccCchhHHHHHHHHHHhhCCCeEEEEecCCCceeeeecccCC-cEEEEcC
Q 017886 97 GDVVVLPAFGAAVEEMVTLNNKNVQI--VDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAG-KYIIVKN 173 (364)
Q Consensus 97 g~~VIIrAHGv~~~v~~~l~~~g~~i--iDaTCP~V~kv~~~v~~~~~~Gy~iIIiG~~~HpEv~gi~g~~~-~~~vv~~ 173 (364)
+.++|+-+=-+...+.+.|.+.|..| ||.. ...++++.+.|+.+ +.||...+++---.+... +.+|+..
T Consensus 8 ~~viIiG~G~~G~~la~~L~~~g~~v~vid~~-------~~~~~~~~~~g~~~-i~gd~~~~~~l~~a~i~~ad~vi~~~ 79 (140)
T 3fwz_A 8 NHALLVGYGRVGSLLGEKLLASDIPLVVIETS-------RTRVDELRERGVRA-VLGNAANEEIMQLAHLECAKWLILTI 79 (140)
T ss_dssp SCEEEECCSHHHHHHHHHHHHTTCCEEEEESC-------HHHHHHHHHTTCEE-EESCTTSHHHHHHTTGGGCSEEEECC
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCCEEEEECC-------HHHHHHHHHcCCCE-EECCCCCHHHHHhcCcccCCEEEEEC
Confidence 56778876556788999999998776 6664 33455566678874 889999998753333222 4566554
Q ss_pred hhh
Q 017886 174 MKE 176 (364)
Q Consensus 174 ~~e 176 (364)
.++
T Consensus 80 ~~~ 82 (140)
T 3fwz_A 80 PNG 82 (140)
T ss_dssp SCH
T ss_pred CCh
Confidence 444
No 183
>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0
Probab=23.93 E-value=3.3e+02 Score=23.04 Aligned_cols=40 Identities=13% Similarity=0.083 Sum_probs=24.5
Q ss_pred HHHHHHHHhcCCcE-EeccCchhHHHHHHHHHHhhCCCeEEEE
Q 017886 109 VEEMVTLNNKNVQI-VDTTCPWVSKVWTSVEKHKKGDYTSIIH 150 (364)
Q Consensus 109 ~~v~~~l~~~g~~i-iDaTCP~V~kv~~~v~~~~~~Gy~iIIi 150 (364)
.+..+.+++.|+.+ +|..+|. ..-..++++.+.|-..|.+
T Consensus 93 ~~~~~~~~~~g~~~~v~~~~~~--t~~~~~~~~~~~g~d~i~v 133 (211)
T 3f4w_A 93 QSCIRAAKEAGKQVVVDMICVD--DLPARVRLLEEAGADMLAV 133 (211)
T ss_dssp HHHHHHHHHHTCEEEEECTTCS--SHHHHHHHHHHHTCCEEEE
T ss_pred HHHHHHHHHcCCeEEEEecCCC--CHHHHHHHHHHcCCCEEEE
Confidence 45677788889876 5655553 1234456666666665544
No 184
>3u31_A SIR2A, transcriptional regulatory protein SIR2 homologue; Zn-binding domain, rossmann fold domain; HET: MYK NAD; 2.20A {Plasmodium falciparum} PDB: 3u3d_A* 3jwp_A*
Probab=23.87 E-value=1.2e+02 Score=28.61 Aligned_cols=58 Identities=22% Similarity=0.300 Sum_probs=34.7
Q ss_pred ccccccccccHHHHHHHHHHHHhhhhCCCEEEEEcCCCC-chhHHHHHHHHhhCCCeEEeCC
Q 017886 255 EHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNS-SNTSHLQEIAEDRGIPSYWIDS 315 (364)
Q Consensus 255 ~~~~v~nTIC~AT~~RQ~a~~eLa~~~vD~miVVGGknS-SNT~rL~eia~~~~~~t~~Ie~ 315 (364)
+++..|+.-=.. ..-+.+.+.+ .++|++||||-.-. .-..+|.+.+++.|.+.+.|.-
T Consensus 193 PdVV~FGE~lp~-~~~~~a~~~~--~~aDllLviGTSl~V~Paa~l~~~a~~~g~~~v~IN~ 251 (290)
T 3u31_A 193 PNIILFGEVVSS-DLLKEAEEEI--AKCDLLLVIGTSSTVSTATNLCHFACKKKKKIVEINI 251 (290)
T ss_dssp EEECCBTSBCCH-HHHHHHHHHH--HHCSEEEEESCCSCSHHHHHHHHHHHHTTCCEEEEES
T ss_pred CeEEEcCCCCCH-HHHHHHHHHH--hcCCEEEEECcCCcchhHHHHHHHHHHcCCEEEEECC
Confidence 345555543211 1123333444 36999999996332 2345788888888888887753
No 185
>2fc3_A 50S ribosomal protein L7AE; alpha-beta-alpha sandwich, ribosome, RNA binding protein; 1.56A {Aeropyrum pernix} SCOP: d.79.3.1 PDB: 3pla_C* 3id5_C* 3hax_D* 2hvy_D* 3hay_D* 3nvi_B 3nmu_C 3nvk_E* 3lwr_C 3lwo_C* 3lwq_C* 3lwp_C 3lwv_C 3hjw_C* 2czw_A 1pxw_A
Probab=23.51 E-value=75 Score=25.90 Aligned_cols=57 Identities=18% Similarity=0.373 Sum_probs=40.2
Q ss_pred hCCCEEEEEcCCCCch-hHHHHHHHHhhCCCeEEeCCCCccCCCCcchhhhccchhhhhcccCC-C-CCCEEEEEeCC
Q 017886 280 EKVDLILVVGGWNSSN-TSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLP-K-GQITIGITSGA 354 (364)
Q Consensus 280 ~~vD~miVVGGknSSN-T~rL~eia~~~~~~t~~Ie~~~eL~~~~~~~~~~~~~~~~~~~~wl~-~-~~~~VGITAGA 354 (364)
+++-++|+-.+-.... .++|-.+|++.+.|.+++.|-.||-. |+- . ++..++||.+.
T Consensus 43 gka~lViiA~D~~~~~~~~~l~~lc~~~~Vp~~~v~sk~eLG~------------------a~G~~~~~~~vaI~d~g 102 (124)
T 2fc3_A 43 GLAKLVVIAEDVDPPEIVMHLPLLCDEKKIPYVYVPSKKRLGE------------------AAGIEVAAASVAIIEPG 102 (124)
T ss_dssp TCCSEEEEETTCSSGGGTTTHHHHHHHTTCCEEEESCHHHHHH------------------HTTCSSCCSEEEEEECG
T ss_pred CCceEEEEcCCCChHHHHHHHHHHHHHcCCCEEEECCHHHHHH------------------HhCCCCCEEEEEEECcc
Confidence 4566665555544433 58999999999999988999888742 331 1 46789998764
No 186
>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A
Probab=23.40 E-value=1.2e+02 Score=30.21 Aligned_cols=60 Identities=17% Similarity=0.221 Sum_probs=38.9
Q ss_pred ceEEecccccCHHHHHHHHHcCcEEecCCccccccccccCCCEEEEcCCCCCH--HHHHHHHhcCCcEE
Q 017886 57 KIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAV--EEMVTLNNKNVQIV 123 (364)
Q Consensus 57 ~vy~lG~iIHN~~Vv~~L~~~Gv~~v~~~~~~~~~~~l~~g~~VIIrAHGv~~--~v~~~l~~~g~~ii 123 (364)
.|... +.--++ ..+.|++.|+.+...- +.+.+..-| +||-+=|+|+ ..++.++++|+.|+
T Consensus 48 ~V~~~-D~~~~~-~~~~l~~~gi~~~~g~----~~~~~~~~d-~vV~Spgi~~~~p~~~~a~~~gi~v~ 109 (494)
T 4hv4_A 48 QISGS-DLAPNS-VTQHLTALGAQIYFHH----RPENVLDAS-VVVVSTAISADNPEIVAAREARIPVI 109 (494)
T ss_dssp EEEEE-CSSCCH-HHHHHHHTTCEEESSC----CGGGGTTCS-EEEECTTSCTTCHHHHHHHHTTCCEE
T ss_pred eEEEE-ECCCCH-HHHHHHHCCCEEECCC----CHHHcCCCC-EEEECCCCCCCCHHHHHHHHCCCCEE
Confidence 44433 443344 5688999999987542 122343335 5566679987 47788899999886
No 187
>1pfk_A Phosphofructokinase; transferase(phosphotransferase); HET: FBP ADP; 2.40A {Escherichia coli} SCOP: c.89.1.1 PDB: 2pfk_A
Probab=23.31 E-value=64 Score=31.02 Aligned_cols=42 Identities=26% Similarity=0.385 Sum_probs=30.4
Q ss_pred HHHHHHHHHhhhhCCCEEEEEcCCCCchhH-HHHHHHHhhCCCeEEe
Q 017886 268 QERQDAMYKMVEEKVDLILVVGGWNSSNTS-HLQEIAEDRGIPSYWI 313 (364)
Q Consensus 268 ~~RQ~a~~eLa~~~vD~miVVGGknSSNT~-rL~eia~~~~~~t~~I 313 (364)
..|+++++.|-....|.++||||-.|-.+- +|.+ .+.+...|
T Consensus 81 ~~~~~~~~~l~~~~Id~LvvIGGdgS~~~a~~L~~----~~i~vvgi 123 (320)
T 1pfk_A 81 NIRAVAIENLKKRGIDALVVIGGDGSYMGAMRLTE----MGFPCIGL 123 (320)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEECHHHHHHHHHHHH----TTCCEEEE
T ss_pred HHHHHHHHHHHHcCCCEEEEECCCchHHHHHHHHh----hCCCEEEE
Confidence 367777777765689999999999886554 4443 46777665
No 188
>3iz5_f 60S ribosomal protein L30 (L30E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_f
Probab=23.04 E-value=1.1e+02 Score=24.85 Aligned_cols=43 Identities=12% Similarity=0.126 Sum_probs=31.1
Q ss_pred hhhhCCCEEEEEcCCCCchhH-HHHHHHHhhCCCeEEe-CCCCccC
Q 017886 277 MVEEKVDLILVVGGWNSSNTS-HLQEIAEDRGIPSYWI-DSEKRIG 320 (364)
Q Consensus 277 La~~~vD~miVVGGknSSNT~-rL~eia~~~~~~t~~I-e~~~eL~ 320 (364)
|-++++-++|+-.+- |.|++ ++-..|..++.|.+++ .|-.||-
T Consensus 38 i~~gkakLVilA~D~-~~~~~~~i~~~c~~~~ipv~~~~~s~~eLG 82 (112)
T 3iz5_f 38 LRSSLGKLIILANNC-PPLRKSEIETYAMLAKISVHHFHGNNVDLG 82 (112)
T ss_dssp HHTTCCSEEEECSCC-CHHHHHHHHHHHHHTTCCEECCCCTTCTHH
T ss_pred HHcCCceEEEEeCCC-CHHHHHHHHHHHHHcCCcEEEeCCCHHHHH
Confidence 333566666666655 56666 5667899999999999 8888884
No 189
>3qbu_A Putative uncharacterized protein; metallo enzyme, peptidoglycan, TIM barrel, deacetylase, HYDR; 2.57A {Helicobacter pylori}
Probab=22.93 E-value=58 Score=30.63 Aligned_cols=90 Identities=9% Similarity=-0.033 Sum_probs=57.9
Q ss_pred cHHHHHHHHHHHHhhCC-CCceEEecccc-cCHHHHHHHHHcCcEEecCC----c--cc-------------cccccccC
Q 017886 38 GVERAVQIAYEARKQFP-EEKIWITNEII-HNPTVNKRLEEMAVQNIPVE----E--GK-------------KQFDVVNK 96 (364)
Q Consensus 38 GV~RAi~~a~~~~~~~~-~~~vy~lG~iI-HN~~Vv~~L~~~Gv~~v~~~----~--~~-------------~~~~~l~~ 96 (364)
|-+..+....+++++++ ..-.|+.|..+ .||.+++++.+.|-.+-..- . .. +.+.++..
T Consensus 71 G~~~~~~rlL~lL~~~~v~aTfFv~g~~~~~~p~~v~~i~~~GhEIg~H~~~H~~~~~~s~~~~~~ei~~~~~~l~~~~G 150 (326)
T 3qbu_A 71 AGEVGIPRLLKLFKKYHLPATWFVPGHSIETFPEQMKMIVDAGHEVGAHGYSHENPIAMSTKQEEDVLLKSVELIKDLTG 150 (326)
T ss_dssp HHHTHHHHHHHHHHHTTCCCEEECCHHHHHHCHHHHHHHHTTTCEEEBCCSSCCCGGGSCHHHHHHHHHHHHHHHHHHHS
T ss_pred CcHHhHHHHHHHHHHcCCCEEEEEEhHHhhhCHHHHHHHHHcCCEEEeCCCCCcChhhCCHHHHHHHHHHHHHHHHHHHC
Confidence 55566666667777653 24588888877 68999999999998765431 0 00 01222211
Q ss_pred CCEEEEcCC--CCCHHHHHHHHhcCCcEEeccCc
Q 017886 97 GDVVVLPAF--GAAVEEMVTLNNKNVQIVDTTCP 128 (364)
Q Consensus 97 g~~VIIrAH--Gv~~~v~~~l~~~g~~iiDaTCP 128 (364)
-....+|+. ..++.+.+.|++.|+.. |.++.
T Consensus 151 ~~p~~fr~P~g~~~~~~~~~l~e~G~~y-dss~~ 183 (326)
T 3qbu_A 151 KAPTGYVAPWWEFSNITNELLLKHGFKY-DHSLM 183 (326)
T ss_dssp SCCCEECCGGGCCSSHHHHHHHTTTCCE-ECCCC
T ss_pred CCCcEEECCCCCCCHHHHHHHHHcCCEE-Eeecc
Confidence 123467775 56788888999998875 67653
No 190
>2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich domain 2, protein-ADP COM transferase; HET: ADP; 2.30A {Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A
Probab=22.85 E-value=1.3e+02 Score=28.13 Aligned_cols=19 Identities=21% Similarity=0.471 Sum_probs=13.5
Q ss_pred HHhhhhCCCEEEEEcCCCC
Q 017886 275 YKMVEEKVDLILVVGGWNS 293 (364)
Q Consensus 275 ~eLa~~~vD~miVVGGknS 293 (364)
++++...+|++||+||--.
T Consensus 74 ~~~~~~~~d~vvv~GGDGT 92 (337)
T 2qv7_A 74 ERAMHENYDVLIAAGGDGT 92 (337)
T ss_dssp HHHTTTTCSEEEEEECHHH
T ss_pred HHHhhcCCCEEEEEcCchH
Confidence 3333356899999999654
No 191
>1m3s_A Hypothetical protein YCKF; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: c.80.1.3 PDB: 1viv_A
Probab=22.64 E-value=87 Score=26.16 Aligned_cols=38 Identities=13% Similarity=0.054 Sum_probs=31.0
Q ss_pred hCCCEEEEEcC-CCCchhHHHHHHHHhhCCCeEEeCCCC
Q 017886 280 EKVDLILVVGG-WNSSNTSHLQEIAEDRGIPSYWIDSEK 317 (364)
Q Consensus 280 ~~vD~miVVGG-knSSNT~rL~eia~~~~~~t~~Ie~~~ 317 (364)
.+-|++|+|.. -+|.++.++++.|++.|.++..|.+..
T Consensus 78 ~~~d~vI~iS~sG~t~~~~~~~~~ak~~g~~vi~IT~~~ 116 (186)
T 1m3s_A 78 AEGDLVIIGSGSGETKSLIHTAAKAKSLHGIVAALTINP 116 (186)
T ss_dssp CTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEESCT
T ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHCCCEEEEEECCC
Confidence 45798888875 556788899999999999999998754
No 192
>4g85_A Histidine-tRNA ligase, cytoplasmic; synthetase; 3.11A {Homo sapiens}
Probab=22.44 E-value=3.7e+02 Score=26.71 Aligned_cols=41 Identities=10% Similarity=0.062 Sum_probs=24.5
Q ss_pred HHHHHHHhcCCcE-Eec-cCchhHHHHHHHHHHhhCCC-eEEEEecC
Q 017886 110 EEMVTLNNKNVQI-VDT-TCPWVSKVWTSVEKHKKGDY-TSIIHGKY 153 (364)
Q Consensus 110 ~v~~~l~~~g~~i-iDa-TCP~V~kv~~~v~~~~~~Gy-~iIIiG~~ 153 (364)
++.+.|++.|+.+ +|- .-+-.++-- +...+.|. .+||+|+.
T Consensus 437 ~l~~~Lr~~Gi~ve~~~~~~~~l~~q~---k~A~~~g~~~~viiG~~ 480 (517)
T 4g85_A 437 KLVSELWDAGIKAELLYKKNPKLLNQL---QYCEEAGIPLVAIIGEQ 480 (517)
T ss_dssp HHHHHHHHTTCCEEECSSSSCCHHHHH---HHHHHHCCCEEEEECHH
T ss_pred HHHHHHHHCCCcEEEEeCCCCCHHHHH---HHHHHCCCCEEEEECCh
Confidence 5778889999887 553 334444433 44444565 45667753
No 193
>1jeo_A MJ1247, hypothetical protein MJ1247; RUMP pathway, phosphosugar, 3-hexulose-6-phosphate isomerase structural genomics; HET: CME CIT; 2.00A {Methanocaldococcus jannaschii} SCOP: c.80.1.3
Probab=22.28 E-value=99 Score=25.64 Aligned_cols=38 Identities=21% Similarity=0.206 Sum_probs=31.3
Q ss_pred hCCCEEEEEcC-CCCchhHHHHHHHHhhCCCeEEeCCCC
Q 017886 280 EKVDLILVVGG-WNSSNTSHLQEIAEDRGIPSYWIDSEK 317 (364)
Q Consensus 280 ~~vD~miVVGG-knSSNT~rL~eia~~~~~~t~~Ie~~~ 317 (364)
.+-|++|+|.- -+|.++.++++.|++.|.++..|.+..
T Consensus 81 ~~~d~vi~iS~sG~t~~~~~~~~~ak~~g~~vi~IT~~~ 119 (180)
T 1jeo_A 81 EKDDLLILISGSGRTESVLTVAKKAKNINNNIIAIVCEC 119 (180)
T ss_dssp CTTCEEEEEESSSCCHHHHHHHHHHHTTCSCEEEEESSC
T ss_pred CCCCEEEEEeCCCCcHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 35798888874 667889999999999999999998753
No 194
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=22.26 E-value=97 Score=25.83 Aligned_cols=39 Identities=21% Similarity=0.239 Sum_probs=31.2
Q ss_pred hCCCEEEEEcC-CCCchhHHHHHHHHhhCCCeEEeCCCCc
Q 017886 280 EKVDLILVVGG-WNSSNTSHLQEIAEDRGIPSYWIDSEKR 318 (364)
Q Consensus 280 ~~vD~miVVGG-knSSNT~rL~eia~~~~~~t~~Ie~~~e 318 (364)
.+-|++|+|.- -+|.++..+++.|++.|.++..|.+..+
T Consensus 86 ~~~d~~i~iS~sG~t~~~~~~~~~ak~~g~~vi~IT~~~~ 125 (187)
T 3sho_A 86 RPTDLMIGVSVWRYLRDTVAALAGAAERGVPTMALTDSSV 125 (187)
T ss_dssp CTTEEEEEECCSSCCHHHHHHHHHHHHTTCCEEEEESCTT
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence 35699888854 5677888999999999999999987543
No 195
>1pg5_A Aspartate carbamoyltransferase; 2.60A {Sulfolobus acidocaldarius} SCOP: c.78.1.1 c.78.1.1 PDB: 2be9_A*
Probab=22.15 E-value=1e+02 Score=29.22 Aligned_cols=58 Identities=5% Similarity=0.012 Sum_probs=39.5
Q ss_pred CCEEEEcCCCCCHHHHHHHHhcCCcEEec-cCchhHHHHHH------HHHHhh-CCCeEEEEecCCC
Q 017886 97 GDVVVLPAFGAAVEEMVTLNNKNVQIVDT-TCPWVSKVWTS------VEKHKK-GDYTSIIHGKYSH 155 (364)
Q Consensus 97 g~~VIIrAHGv~~~v~~~l~~~g~~iiDa-TCP~V~kv~~~------v~~~~~-~Gy~iIIiG~~~H 155 (364)
.|.++||..+ .....+.++-.++.||.| -+..-.=.|.+ -+.+.. +|.+|.++||-.|
T Consensus 95 ~D~iviR~~~-~~~~~~la~~~~vPVINaG~g~~~HPtQ~LaDl~Ti~e~~g~l~gl~va~vGD~~~ 160 (299)
T 1pg5_A 95 SDGIVMRHKY-DGASRFASEISDIPVINAGDGKHEHPTQAVIDIYTINKHFNTIDGLVFALLGDLKY 160 (299)
T ss_dssp CSEEEEEESS-BTHHHHHHHHCSSCEEEEEETTTBCHHHHHHHHHHHHHHHSCSTTCEEEEEECCSS
T ss_pred CCEEEEeCCC-hhHHHHHHHhCCCCEEeCCCCCCcCcHHHHHHHHHHHHHhCCcCCcEEEEECCCCC
Confidence 5789999544 334555666778999999 65554444443 333433 7999999999877
No 196
>2h78_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC6014, pseudomonas aeruginosa PA01, PSI-2, structural genomics; HET: PG4; 2.20A {Pseudomonas aeruginosa} PDB: 3cum_A 3obb_A* 3q3c_A*
Probab=22.03 E-value=4.3e+02 Score=23.63 Aligned_cols=81 Identities=6% Similarity=-0.065 Sum_probs=49.0
Q ss_pred ceEEecccccCHHHHHHHHHcCcEEecCCccccccccc-cCCCEEEEcCCCCCHHHHHHHH---------hcCCcEEecc
Q 017886 57 KIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVV-NKGDVVVLPAFGAAVEEMVTLN---------NKNVQIVDTT 126 (364)
Q Consensus 57 ~vy~lG~iIHN~~Vv~~L~~~Gv~~v~~~~~~~~~~~l-~~g~~VIIrAHGv~~~v~~~l~---------~~g~~iiDaT 126 (364)
+|+.+ -.|+...+.|.+.|+.+.++ ++++ .+-|.| |-+=..+..+.+.+. ..|..|||.+
T Consensus 28 ~V~~~---d~~~~~~~~~~~~g~~~~~~------~~~~~~~aDvv-i~~vp~~~~~~~v~~~~~~~~~~l~~~~~vi~~s 97 (302)
T 2h78_A 28 LLNVF---DLVQSAVDGLVAAGASAARS------ARDAVQGADVV-ISMLPASQHVEGLYLDDDGLLAHIAPGTLVLECS 97 (302)
T ss_dssp EEEEE---CSSHHHHHHHHHTTCEECSS------HHHHHTTCSEE-EECCSCHHHHHHHHHSSSCGGGSSCSSCEEEECS
T ss_pred eEEEE---cCCHHHHHHHHHCCCeEcCC------HHHHHhCCCeE-EEECCCHHHHHHHHcCchhHHhcCCCCcEEEECC
Confidence 57666 35888999999999988764 3333 334544 444444444555443 3577889965
Q ss_pred CchhHHHHHHHHHHhhCCCeE
Q 017886 127 CPWVSKVWTSVEKHKKGDYTS 147 (364)
Q Consensus 127 CP~V~kv~~~v~~~~~~Gy~i 147 (364)
=-.........+.+.+.|..+
T Consensus 98 t~~~~~~~~l~~~~~~~g~~~ 118 (302)
T 2h78_A 98 TIAPTSARKIHAAARERGLAM 118 (302)
T ss_dssp CCCHHHHHHHHHHHHHTTCCE
T ss_pred CCCHHHHHHHHHHHHHcCCEE
Confidence 444444455555555667654
No 197
>1zxx_A 6-phosphofructokinase; allosteric regulation, lactobacillus BU transferase; 1.85A {Lactobacillus delbrueckii subsp}
Probab=22.00 E-value=70 Score=30.71 Aligned_cols=42 Identities=19% Similarity=0.359 Sum_probs=30.0
Q ss_pred HHHHHHHHHhhhhCCCEEEEEcCCCCchhH-HHHHHHHhhCCCeEEe
Q 017886 268 QERQDAMYKMVEEKVDLILVVGGWNSSNTS-HLQEIAEDRGIPSYWI 313 (364)
Q Consensus 268 ~~RQ~a~~eLa~~~vD~miVVGGknSSNT~-rL~eia~~~~~~t~~I 313 (364)
..|+++++.|-....|.++||||-.|-.+- +|.+ .+.+...|
T Consensus 80 ~~~~~~~~~l~~~~Id~LvvIGGdgS~~~a~~L~~----~~i~vvgi 122 (319)
T 1zxx_A 80 EGQLAGIEQLKKHGIDAVVVIGGDGSYHGALQLTR----HGFNSIGL 122 (319)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEECHHHHHHHHHHHH----TTCCEEEE
T ss_pred HHHHHHHHHHHHhCCCEEEEECCchHHHHHHHHHH----hCCCEEEE
Confidence 467777777765689999999999886554 4443 46676654
No 198
>2qu7_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus saprophyticus subsp}
Probab=21.85 E-value=3.8e+02 Score=23.16 Aligned_cols=122 Identities=12% Similarity=0.092 Sum_probs=64.4
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHH-HHHHHhhhhCCCEEEEEcCCCCchh
Q 017886 218 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSNT 296 (364)
Q Consensus 218 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ-~a~~eLa~~~vD~miVVGGknSSNT 296 (364)
..|+++... +-.-|.++.+-+.+...+. +-++.++++ ....++| +.++.|.+..+|.+|+.+...+..
T Consensus 9 ~~Igvi~~~--~~~~~~~~~~gi~~~~~~~------g~~~~~~~~--~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~- 77 (288)
T 2qu7_A 9 NIIAFIVPD--QNPFFTEVLTEISHECQKH------HLHVAVASS--EENEDKQQDLIETFVSQNVSAIILVPVKSKFQ- 77 (288)
T ss_dssp EEEEEEESS--CCHHHHHHHHHHHHHHGGG------TCEEEEEEC--TTCHHHHHHHHHHHHHTTEEEEEECCSSSCCC-
T ss_pred CEEEEEECC--CCchHHHHHHHHHHHHHHC------CCEEEEEeC--CCCHHHHHHHHHHHHHcCccEEEEecCCCChH-
Confidence 479998876 5566778877776643322 223443332 2233444 345555556899999987654432
Q ss_pred HHHHHHHHhhCCCeEEeCCCCccCCCCcchhhh-ccchhhhhcccC-CCCCCEEEEEeCCCC
Q 017886 297 SHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKL-MHGELVEKENWL-PKGQITIGITSGAST 356 (364)
Q Consensus 297 ~rL~eia~~~~~~t~~Ie~~~eL~~~~~~~~~~-~~~~~~~~~~wl-~~~~~~VGITAGAST 356 (364)
.+.++ .+.|...+.+..+-+.-..+.... ..|.. .-+|| ..|.++||+-.|...
T Consensus 78 -~~~~l---~~iPvV~~~~~~~~~~~~~V~~d~~~~g~~--a~~~L~~~G~~~I~~i~~~~~ 133 (288)
T 2qu7_A 78 -MKREW---LKIPIMTLDRELESTSLPSITVDNEEAAYI--ATKRVLESTCKEVGLLLANPN 133 (288)
T ss_dssp -CCGGG---GGSCEEEESCCCSSCCCCEEEECHHHHHHH--HHHHHHTSSCCCEEEEECCTT
T ss_pred -HHHHh---cCCCEEEEecccCCCCCCEEEECcHHHHHH--HHHHHHHcCCCcEEEEecCCC
Confidence 22222 578998888753211100111100 11211 11233 137899999988643
No 199
>1vim_A Hypothetical protein AF1796; structural genomics, unknown function; 1.36A {Archaeoglobus fulgidus} SCOP: c.80.1.3
Probab=21.84 E-value=3.7e+02 Score=22.80 Aligned_cols=34 Identities=18% Similarity=0.223 Sum_probs=21.6
Q ss_pred ccCCCE-EEEcCCCCCHHHHHHH---HhcCCcEEeccC
Q 017886 94 VNKGDV-VVLPAFGAAVEEMVTL---NNKNVQIVDTTC 127 (364)
Q Consensus 94 l~~g~~-VIIrAHGv~~~v~~~l---~~~g~~iiDaTC 127 (364)
+.++|. ++|+.-|-++++.+.+ +++|..+|=-|+
T Consensus 87 ~~~~DvvI~iS~SG~t~~~i~~~~~ak~~g~~vI~IT~ 124 (200)
T 1vim_A 87 ITDQDVLVGISGSGETTSVVNISKKAKDIGSKLVAVTG 124 (200)
T ss_dssp CCTTCEEEEECSSSCCHHHHHHHHHHHHHTCEEEEEES
T ss_pred CCCCCEEEEEeCCCCcHHHHHHHHHHHHCCCeEEEEEC
Confidence 456776 4689999999976655 344444443333
No 200
>2h4a_A YRAM (HI1655); perplasmic binding protein, lipoprotein; 1.35A {Haemophilus influenzae} PDB: 3ckm_A
Probab=21.83 E-value=32 Score=32.35 Aligned_cols=94 Identities=14% Similarity=0.096 Sum_probs=56.8
Q ss_pred cccccccccccHHHHHHHHHHHHhhhhCCCEEEEEcCCCCchhHHHHHHH-HhhCCCeEEeCCCCccC-CCCcchhhh-c
Q 017886 254 NEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIA-EDRGIPSYWIDSEKRIG-PGNKIAYKL-M 330 (364)
Q Consensus 254 ~~~~~v~nTIC~AT~~RQ~a~~eLa~~~vD~miVVGGknSSNT~rL~eia-~~~~~~t~~Ie~~~eL~-~~~~~~~~~-~ 330 (364)
..++.++||-|..+ .+++++|.+. .+.+|||.-.|+++..+.+++ .+.+.|..-....+.+. ..+.+.|.. -
T Consensus 32 ~i~l~~~D~~~~~a---~~~~~~l~~~--~v~~IiGp~~s~~~~a~~~~~~~~~~vp~i~~~~~~~~~~~~~~~~f~~~~ 106 (325)
T 2h4a_A 32 TIPVQVFDTSMNSV---QDIIAQAKQA--GIKTLVGPLLKQNLDVILADPAQIQGMDVLALNATPNSRAIPQLCYYGLSP 106 (325)
T ss_dssp CSCEEEEETTTSCH---HHHHHHHHHT--TCCEEECCCSHHHHHHHHHCGGGGTTCEEEESCCCSSCCCCTTEEECCCCH
T ss_pred CceEEEEECCCChH---HHHHHHHHHC--CCCEEEeeCCHHHHHHHHhhhhccCCCcEEECCCCccccCCCCeEEEECCH
Confidence 45788999999652 4555566433 466789999999999999998 67788877655544442 223333332 1
Q ss_pred cchhhhhcccC-CCCCCEEEEEe
Q 017886 331 HGELVEKENWL-PKGQITIGITS 352 (364)
Q Consensus 331 ~~~~~~~~~wl-~~~~~~VGITA 352 (364)
..+.....+|+ ..+.++++|-.
T Consensus 107 ~~~~~~~a~~a~~~g~k~vail~ 129 (325)
T 2h4a_A 107 EDEAESAANKMWNDGVRNPLVAM 129 (325)
T ss_dssp HHHHHHHHHHHHHTTCCSCEEEE
T ss_pred HHHHHHHHHHHHHcCCCeEEEEE
Confidence 11121111222 13667777765
No 201
>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ...
Probab=21.80 E-value=4.5e+02 Score=23.78 Aligned_cols=126 Identities=13% Similarity=0.182 Sum_probs=63.5
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHH-HHHHHhhhhCCCEEEEEcCCCCchh
Q 017886 218 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSNT 296 (364)
Q Consensus 218 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ-~a~~eLa~~~vD~miVVGGknSSNT 296 (364)
..|+++.-. +.-.-|.++++-+.+...+. + -++.+.++- ....++| +.+..|....+|.+|+.+...+ .
T Consensus 62 ~~Igvi~~~-~~~~~~~~~~~gi~~~a~~~-g-----~~~~~~~~~-~~~~~~~~~~l~~l~~~~vdGiIi~~~~~~--~ 131 (349)
T 1jye_A 62 LLIGVATSS-LALHAPSQIVAAILSRADQL-G-----ASVVVSMVE-RSGVEACKTAVHNLLAQRVSGLIINYPLDD--Q 131 (349)
T ss_dssp CEEEEEESC-TTSHHHHHHHHHHHHHHHHT-T-----CEEEEEECC-SSSHHHHHHHHHHHHTTTCSCEEEESCCCH--H
T ss_pred CEEEEEeCC-CCcccHHHHHHHHHHHHHHc-C-----CEEEEEeCC-CCcHHHHHHHHHHHHHCCCCEEEEecCCCC--h
Confidence 478888754 33445677777776543322 1 123322211 1112333 3455555568999999875322 2
Q ss_pred HHHHHHHHhhCCCeEEeCCCCccCCCCcchhhh-ccchhhhhcccC-CCCCCEEEEEeCCCC
Q 017886 297 SHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKL-MHGELVEKENWL-PKGQITIGITSGAST 356 (364)
Q Consensus 297 ~rL~eia~~~~~~t~~Ie~~~eL~~~~~~~~~~-~~~~~~~~~~wl-~~~~~~VGITAGAST 356 (364)
..+...+...+.|...++...+-+. ..+.+.. ..+... -++| ..|.++||+-+|...
T Consensus 132 ~~~~~~~~~~~iPvV~i~~~~~~~~-~~V~~d~~~~~~~a--~~~L~~~G~~~I~~i~g~~~ 190 (349)
T 1jye_A 132 DAIAVEAACTNVPALFLDVSDQTPI-NSIIFSHEDGTRLG--VEHLVALGHQQIALLAGPLS 190 (349)
T ss_dssp HHHHHHHHTTTSCEEESSSCTTSSS-CEEEECHHHHHHHH--HHHHHHHTCCSEEEEECCTT
T ss_pred hHHHHHHhhCCCCEEEEcccCCCCC-CEEEEchHHHHHHH--HHHHHHCCCCEEEEEeCCCC
Confidence 2344445567889999976432111 1111111 111111 1223 137899999988643
No 202
>1vim_A Hypothetical protein AF1796; structural genomics, unknown function; 1.36A {Archaeoglobus fulgidus} SCOP: c.80.1.3
Probab=21.78 E-value=89 Score=26.85 Aligned_cols=38 Identities=13% Similarity=0.270 Sum_probs=31.5
Q ss_pred hCCCEEEEEcC-CCCchhHHHHHHHHhhCCCeEEeCCCC
Q 017886 280 EKVDLILVVGG-WNSSNTSHLQEIAEDRGIPSYWIDSEK 317 (364)
Q Consensus 280 ~~vD~miVVGG-knSSNT~rL~eia~~~~~~t~~Ie~~~ 317 (364)
.+-|++|+|-- -+|.++.++++.|++.|.++..|.+..
T Consensus 88 ~~~DvvI~iS~SG~t~~~i~~~~~ak~~g~~vI~IT~~~ 126 (200)
T 1vim_A 88 TDQDVLVGISGSGETTSVVNISKKAKDIGSKLVAVTGKR 126 (200)
T ss_dssp CTTCEEEEECSSSCCHHHHHHHHHHHHHTCEEEEEESCT
T ss_pred CCCCEEEEEeCCCCcHHHHHHHHHHHHCCCeEEEEECCC
Confidence 35799888875 667888899999999999999998754
No 203
>3mvn_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamayl-M diaminopimelate ligase; structural genomics, MCSG, PSI-2; 1.90A {Haemophilus ducreyi}
Probab=21.53 E-value=75 Score=26.66 Aligned_cols=78 Identities=5% Similarity=0.033 Sum_probs=44.2
Q ss_pred ChHHHHHHHHHHHHHHhhhcccccccccc-cccccccH----HHHHHHHHHHHhhhhCCCEEEEEcCCCCchhHHHHHHH
Q 017886 229 LKGETEEIGKLVEKTMMRKFGVENVNEHF-ISFNTICD----ATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIA 303 (364)
Q Consensus 229 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~-~v~nTIC~----AT~~RQ~a~~eLa~~~vD~miVVGGknSSNT~rL~eia 303 (364)
+.+..+..++.|++.++.+ ++ .++ =|. .+......+.+.+ ..+|.+|++|-. .. ...+.+++
T Consensus 46 nP~si~a~l~al~~~~~~~--------riivvf--~~g~~s~r~k~~~~~~~~~~-~~aD~vi~~~~~-~~-~~~~~~~~ 112 (163)
T 3mvn_A 46 HPTAITATIDALRAKVGQQ--------RILAVL--EPRSNTMKMGVHKHELATSL-QDADSVFIYQPP-TI-EWQVSEVL 112 (163)
T ss_dssp SHHHHHHHHHHHHHHHTTS--------CEEEEE--CCC---------CHHHHHHH-TTCSEEEEECC------CCHHHHH
T ss_pred CHHHHHHHHHHHHHhcCCC--------cEEEEE--CCCCcchhhHHHHHHHHHHH-hcCCEEEEECCC-Cc-ccCHHHHH
Confidence 6778888888887644321 12 233 121 2233335555555 469999999843 11 12367787
Q ss_pred HhhCCCeEEeCCCCcc
Q 017886 304 EDRGIPSYWIDSEKRI 319 (364)
Q Consensus 304 ~~~~~~t~~Ie~~~eL 319 (364)
+..+.+.+++++.+|+
T Consensus 113 ~~~~~~~~~~~d~~ea 128 (163)
T 3mvn_A 113 ANLAQPAISADDVDEL 128 (163)
T ss_dssp TTCCSCEEEESSHHHH
T ss_pred hhCCCCeEEECCHHHH
Confidence 7766678888877665
No 204
>3gnh_A L-lysine, L-arginine carboxypeptidase CC2672; N-methyl phosphonate derivative of L- arginine, hydrolase; HET: KCX M3R; 1.70A {Caulobacter crescentus CB15} PDB: 3mtw_A*
Probab=21.50 E-value=3.3e+02 Score=24.91 Aligned_cols=94 Identities=12% Similarity=-0.055 Sum_probs=54.2
Q ss_pred CCcccHHHHHHHHHHHHhhCCC-CceEEeccc----------ccCHH----HHHHHHHcCcEEecCCccccccccc-cCC
Q 017886 34 GFCWGVERAVQIAYEARKQFPE-EKIWITNEI----------IHNPT----VNKRLEEMAVQNIPVEEGKKQFDVV-NKG 97 (364)
Q Consensus 34 GFC~GV~RAi~~a~~~~~~~~~-~~vy~lG~i----------IHN~~----Vv~~L~~~Gv~~v~~~~~~~~~~~l-~~g 97 (364)
+++.+.+.+.+.+.+.++...+ -++|.-|.+ --.+. +++...+.|+.+.-...+...+... ..|
T Consensus 161 ~~~~~~~~~~~~~~~~~~~g~~~ik~~~~G~~~~~~~~~~~~~~~~e~l~~~~~~A~~~g~~v~~H~~~~~~i~~~~~~g 240 (403)
T 3gnh_A 161 FNSDSPDEARKAVRTLKKYGAQVIKICATGGVFSRGNEPGQQQLTYEEMKAVVDEAHMAGIKVAAHAHGASGIREAVRAG 240 (403)
T ss_dssp TCCCSHHHHHHHHHHHHHTTCSEEEEECBCCSSSSSCCTTCBCSCHHHHHHHHHHHHHTTCEEEEEECSHHHHHHHHHTT
T ss_pred cccCCHHHHHHHHHHHHHcCCCEEEEeecCCcCCCCCCCccccCCHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhC
Confidence 4567888888888887765321 146655432 33443 4455567798875432111111111 124
Q ss_pred CEEEEcCCCCCHHHHHHHHhcCCcEEeccCch
Q 017886 98 DVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPW 129 (364)
Q Consensus 98 ~~VIIrAHGv~~~v~~~l~~~g~~iiDaTCP~ 129 (364)
-..|.=..-++++..+.++++|+.++ +||+
T Consensus 241 ~~~i~H~~~~~~~~~~~~~~~g~~~~--~~~~ 270 (403)
T 3gnh_A 241 VDTIEHASLVDDEGIKLAVQKGAYFS--MDIY 270 (403)
T ss_dssp CSEEEECTTCCHHHHHHHHHHTCEEE--CCCS
T ss_pred CCEEecCCcCCHHHHHHHHHCCCEEE--eeec
Confidence 33444333458999999999999886 4543
No 205
>3sm9_A Mglur3, metabotropic glutamate receptor 3; structural genomics, structural genomics consortium, SGC, CE membrane, G-protein coupled receptor; HET: Z99; 2.26A {Homo sapiens}
Probab=21.27 E-value=93 Score=30.47 Aligned_cols=30 Identities=23% Similarity=0.177 Sum_probs=26.5
Q ss_pred CEEEEEcCCCCchhHHHHHHHHhhCCCeEE
Q 017886 283 DLILVVGGWNSSNTSHLQEIAEDRGIPSYW 312 (364)
Q Consensus 283 D~miVVGGknSSNT~rL~eia~~~~~~t~~ 312 (364)
.++.|||+..|+-|..++.++...+.|..-
T Consensus 116 ~v~aviG~~~S~~s~ava~i~~~~~iP~Is 145 (479)
T 3sm9_A 116 LIAGVIGGSYSSVSIQVANLLRLFQIPQIS 145 (479)
T ss_dssp CEEEEECCSSHHHHHHHHHHHGGGTCCEEE
T ss_pred ceEEEECCCCcHHHHHHHHHHhcCCccEEC
Confidence 478899999999999999999999988544
No 206
>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8
Probab=20.80 E-value=86 Score=25.82 Aligned_cols=27 Identities=19% Similarity=0.121 Sum_probs=16.5
Q ss_pred CCCHHHHHHHHhcCCcEEeccCchhHH
Q 017886 106 GAAVEEMVTLNNKNVQIVDTTCPWVSK 132 (364)
Q Consensus 106 Gv~~~v~~~l~~~g~~iiDaTCP~V~k 132 (364)
+...+..+.++++|+.++|--|+-+..
T Consensus 103 ~~~~~l~~~a~~~Gi~~igpnc~g~~~ 129 (138)
T 1y81_A 103 AESEEIRRFLEKAGVEYSFGRCIMVET 129 (138)
T ss_dssp SCCHHHHHHHHHHTCEEECSCCHHHHC
T ss_pred cHHHHHHHHHHHCCCEEEcCCcceEEc
Confidence 445666666666666666666665543
No 207
>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}
Probab=20.77 E-value=2.5e+02 Score=25.16 Aligned_cols=91 Identities=11% Similarity=-0.049 Sum_probs=56.6
Q ss_pred HHHHHHhhCCCCceEEecccccCHHHHHHHHHcCcEEecCCccccccccc-cCCCEEEEcCCCCCHHHHHHH--------
Q 017886 45 IAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVV-NKGDVVVLPAFGAAVEEMVTL-------- 115 (364)
Q Consensus 45 ~a~~~~~~~~~~~vy~lG~iIHN~~Vv~~L~~~Gv~~v~~~~~~~~~~~l-~~g~~VIIrAHGv~~~v~~~l-------- 115 (364)
++...++. +-+|+.+. .|+...+.|.+.|+.+.++ ++++ ..-|.||+ +=..+..+.+.+
T Consensus 16 ~a~~l~~~--G~~V~~~d---r~~~~~~~~~~~g~~~~~~------~~~~~~~aDvvi~-~vp~~~~~~~v~~~~~~l~~ 83 (287)
T 3pef_A 16 MAKNLVKA--GCSVTIWN---RSPEKAEELAALGAERAAT------PCEVVESCPVTFA-MLADPAAAEEVCFGKHGVLE 83 (287)
T ss_dssp HHHHHHHT--TCEEEEEC---SSGGGGHHHHHTTCEECSS------HHHHHHHCSEEEE-CCSSHHHHHHHHHSTTCHHH
T ss_pred HHHHHHHC--CCeEEEEc---CCHHHHHHHHHCCCeecCC------HHHHHhcCCEEEE-EcCCHHHHHHHHcCcchHhh
Confidence 44444443 23576553 5888899999999988764 3333 33455544 433333444443
Q ss_pred -HhcCCcEEeccCchhHHHHHHHHHHhhCCCeE
Q 017886 116 -NNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTS 147 (364)
Q Consensus 116 -~~~g~~iiDaTCP~V~kv~~~v~~~~~~Gy~i 147 (364)
...|..|||.+--.........+.+.+.|...
T Consensus 84 ~l~~~~~vi~~st~~~~~~~~~~~~~~~~g~~~ 116 (287)
T 3pef_A 84 GIGEGRGYVDMSTVDPATSQRIGVAVVAKGGRF 116 (287)
T ss_dssp HCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEE
T ss_pred cCCCCCEEEeCCCCCHHHHHHHHHHHHHhCCEE
Confidence 24678899998777777777777777777553
No 208
>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*
Probab=20.74 E-value=52 Score=32.67 Aligned_cols=55 Identities=15% Similarity=0.274 Sum_probs=0.0
Q ss_pred CEEEEEcCCCCch-hHHHHHHHHhhCCCeEEeCCCCccCCCCcchhhhccchhhhhcccCC------CCCCEEEEEeCCC
Q 017886 283 DLILVVGGWNSSN-TSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLP------KGQITIGITSGAS 355 (364)
Q Consensus 283 D~miVVGGknSSN-T~rL~eia~~~~~~t~~Ie~~~eL~~~~~~~~~~~~~~~~~~~~wl~------~~~~~VGITAGAS 355 (364)
++-+||-..+... ...+++.|++.|.+ |..++|.+. .+|. .+.-.||||++..
T Consensus 72 ~~~lVi~at~~~~~n~~i~~~a~~~~i~---vn~~d~~e~-----------------~~~~~pa~~~~~~l~iaIsT~Gk 131 (457)
T 1pjq_A 72 SCWLAIAATDDDTVNQRVSDAAESRRIF---CNVVDAPKA-----------------ASFIMPSIIDRSPLMVAVSSGGT 131 (457)
T ss_dssp TCSEEEECCSCHHHHHHHHHHHHHTTCE---EEETTCTTS-----------------SSEECCEEEEETTEEEEEECTTS
T ss_pred CccEEEEcCCCHHHHHHHHHHHHHcCCE---EEECCCccc-----------------CceEeeeEEEeCCeEEEEECCCC
Q ss_pred CC
Q 017886 356 TP 357 (364)
Q Consensus 356 TP 357 (364)
||
T Consensus 132 sp 133 (457)
T 1pjq_A 132 SP 133 (457)
T ss_dssp CH
T ss_pred Ch
No 209
>3ckm_A YRAM (HI1655), LPOA; periplasmic-binding protein, lipoprotein, unliganded, biosynthetic protein; 1.35A {Haemophilus influenzae} SCOP: c.93.1.1
Probab=20.69 E-value=42 Score=30.69 Aligned_cols=62 Identities=11% Similarity=0.090 Sum_probs=39.1
Q ss_pred ccccccccccccHHHHHHHHHHHHhhhhCCCEEEEEcCCCCchhHHHHHHHHhhC-CCeEEeCCCCcc
Q 017886 253 VNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRG-IPSYWIDSEKRI 319 (364)
Q Consensus 253 ~~~~~~v~nTIC~AT~~RQ~a~~eLa~~~vD~miVVGGknSSNT~rL~eia~~~~-~~t~~Ie~~~eL 319 (364)
..-++.++||-+..+. .+.+.+. +-.+.+|||...|+++..+.....+.+ ++...-.+.+.+
T Consensus 33 ~~i~l~~~D~~~~~~~---aa~~~~~--~~~v~~iiGp~~s~~~~a~~~~~~~~~~v~~~~~~~~~~~ 95 (327)
T 3ckm_A 33 STIPVQVFDTSMNSVQ---DIIAQAK--QAGIKTLVGPLLKQNLDVILADPAQIQGMDVLALNATPNS 95 (327)
T ss_dssp CCSCEEEEETTTSCHH---HHHHHHH--HTTCCEEECCCSHHHHHHHHHCGGGGTTCEEEESCCCTTC
T ss_pred CCceEEEEeCCCCHHH---HHHHHHH--HcCCeEEEEccccccchhhHHHHHhccCceEeccCcCccc
Confidence 3467889999888743 2333333 335667899999999998877665554 444433333333
No 210
>1uf3_A Hypothetical protein TT1561; metallo-dependent phosphatases, structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.10A {Thermus thermophilus} SCOP: d.159.1.6
Probab=20.68 E-value=1.4e+02 Score=25.03 Aligned_cols=57 Identities=7% Similarity=-0.044 Sum_probs=0.0
Q ss_pred cceEEEEeCCCCCcccHHHHHHHHHHHHhhCCCCceEEecccccCH-------HHHHHHHHcCcEEe
Q 017886 23 GNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNP-------TVNKRLEEMAVQNI 82 (364)
Q Consensus 23 ~~mkI~lA~~~GFC~GV~RAi~~a~~~~~~~~~~~vy~lG~iIHN~-------~Vv~~L~~~Gv~~v 82 (364)
+.|||....--=.++ .+++.+.+.+++.+..-|+..|+|++.. .+++.|++.++.++
T Consensus 4 ~~mri~~iSD~H~~~---~~~~~~~~~~~~~~~D~vi~~GDl~~~~~~~~~~~~~~~~l~~~~~pv~ 67 (228)
T 1uf3_A 4 TVRYILATSNPMGDL---EALEKFVKLAPDTGADAIALIGNLMPKAAKSRDYAAFFRILSEAHLPTA 67 (228)
T ss_dssp CCCEEEEEECCTTCH---HHHHHHHTHHHHHTCSEEEEESCSSCTTCCHHHHHHHHHHHGGGCSCEE
T ss_pred ceEEEEEEeeccCCH---HHHHHHHHHHhhcCCCEEEECCCCCCCCCCHHHHHHHHHHHHhcCCcEE
No 211
>3ks9_A Mglur1, metabotropic glutamate receptor 1; glutamate receptors, dimerization, glutamic acid BIN structural genomics, structural genomics consortium; HET: Z99 NAG; 1.90A {Homo sapiens} SCOP: c.93.1.1 PDB: 1ewk_A* 1ewt_A* 1ewv_A 1isr_A* 1iss_A* 3lmk_A*
Probab=20.45 E-value=99 Score=30.42 Aligned_cols=32 Identities=22% Similarity=0.150 Sum_probs=27.5
Q ss_pred CCEEEEEcCCCCchhHHHHHHHHhhCCCeEEe
Q 017886 282 VDLILVVGGWNSSNTSHLQEIAEDRGIPSYWI 313 (364)
Q Consensus 282 vD~miVVGGknSSNT~rL~eia~~~~~~t~~I 313 (364)
-.++.|||+..|+.|..++.++...+.|..--
T Consensus 127 ~~v~aviG~~~S~~s~ava~i~~~~~iP~Is~ 158 (496)
T 3ks9_A 127 KPIAGVIGPGSSSVAIQVQNLLQLFDIPQIAY 158 (496)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHGGGTCCEEES
T ss_pred CceEEEECCCccHHHHHHHHHHhhcceeEECC
Confidence 35888999999999999999999998886543
No 212
>3roj_A D-fructose 1,6-bisphosphatase class 2/sedoheptulo bisphosphatase; fructose-1,6-/sedoheptulose-1,7-bisphosphatase, hydrolase; HET: AMP GOL; 2.30A {Synechocystis} PDB: 3rpl_A*
Probab=20.34 E-value=31 Score=34.04 Aligned_cols=43 Identities=19% Similarity=0.261 Sum_probs=33.5
Q ss_pred cCHHHHHHHHHcCcEEecCCccccccccccCCCEEEEcCCCCCHHH
Q 017886 66 HNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEE 111 (364)
Q Consensus 66 HN~~Vv~~L~~~Gv~~v~~~~~~~~~~~l~~g~~VIIrAHGv~~~v 111 (364)
.|++..++.+++|+.-+ ++.-.++|+-.|+-|||-|-||+...
T Consensus 293 ~~e~e~~r~~~mGI~D~---~rvl~~dDLv~gddviFaATGITdG~ 335 (379)
T 3roj_A 293 SREGNLERLASMGIKNP---DQVYNCEELACGETVLFAACGITPGT 335 (379)
T ss_dssp CHHHHHHHHHHTTCCCT---TCEEEHHHHTCSSSEEEEEEESSCCS
T ss_pred CCHHHHHHHHHcCCCCh---hheeEHHHccCCCCEEEEEeCccCCC
Confidence 99999999999998322 22335677777878999999998764
No 213
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=20.25 E-value=88 Score=27.71 Aligned_cols=126 Identities=15% Similarity=0.129 Sum_probs=65.2
Q ss_pred ceEEEEEcCCCChHHHH-HHHHHHHHHHhhhcccccccccccccccccHHHHHHHHH-HHHhhhhCCCEEEEEcCCCCch
Q 017886 218 VKVGIANQTTMLKGETE-EIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDA-MYKMVEEKVDLILVVGGWNSSN 295 (364)
Q Consensus 218 ~kv~vvsQTT~~~~~~~-~i~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ~a-~~eLa~~~vD~miVVGGknSSN 295 (364)
..|+++.....+ .-|. ++.+-+.+...+. +-++.++++ ....++|.. ++.|.+..+|.+|+.+...+.
T Consensus 14 ~~Igvi~~~~~~-~~~~~~~~~gi~~~a~~~------g~~~~~~~~--~~~~~~~~~~~~~l~~~~vdGiIi~~~~~~~- 83 (301)
T 3miz_A 14 NTFGIITDYVST-TPYSVDIVRGIQDWANAN------GKTILIANT--GGSSEREVEIWKMFQSHRIDGVLYVTMYRRI- 83 (301)
T ss_dssp CEEEEEESSTTT-CCSCHHHHHHHHHHHHHT------TCEEEEEEC--TTCHHHHHHHHHHHHHTTCSEEEEEEEEEEE-
T ss_pred CEEEEEeCCCcC-cccHHHHHHHHHHHHHHC------CCEEEEEeC--CCChHHHHHHHHHHHhCCCCEEEEecCCccH-
Confidence 579988765432 2244 5555555432222 223444432 223345533 444445689999999865433
Q ss_pred hHHHHHHHHhhCCCeEEeCCCCccC-CCCcchhhh-ccchhhhhcccC-CCCCCEEEEEeCCCCCH
Q 017886 296 TSHLQEIAEDRGIPSYWIDSEKRIG-PGNKIAYKL-MHGELVEKENWL-PKGQITIGITSGASTPD 358 (364)
Q Consensus 296 T~rL~eia~~~~~~t~~Ie~~~eL~-~~~~~~~~~-~~~~~~~~~~wl-~~~~~~VGITAGASTP~ 358 (364)
+++.+.+.+.|...+.+..+-. ....+.... ..|..- -++| ..|.++||+-.|.....
T Consensus 84 ---~~~~~~~~~iPvV~~~~~~~~~~~~~~V~~D~~~~g~~a--~~~L~~~G~~~I~~i~~~~~~~ 144 (301)
T 3miz_A 84 ---VDPESGDVSIPTVMINCRPQTRELLPSIEPDDYQGARDL--TRYLLERGHRRIGYIRLNPILL 144 (301)
T ss_dssp ---CCCCCTTCCCCEEEEEEECSSTTSSCEEEECHHHHHHHH--HHHHHTTTCCSEEEEECCTTSH
T ss_pred ---HHHHHHhCCCCEEEECCCCCCCCCCCEEeeChHHHHHHH--HHHHHHcCCCeEEEEecCccch
Confidence 4455567789998887643322 101111110 112111 1222 24789999999876543
No 214
>1z0s_A Probable inorganic polyphosphate/ATP-NAD kinase; ATP-binding, structural genomics, NADP, PSI, protein structure initiative; HET: ATP; 1.70A {Archaeoglobus fulgidus} SCOP: e.52.1.1 PDB: 1z0u_A* 1z0z_A* 1suw_A*
Probab=20.17 E-value=1.4e+02 Score=27.95 Aligned_cols=66 Identities=20% Similarity=0.292 Sum_probs=37.2
Q ss_pred eEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHHHHHHHhhhhCCCEEEEEcCCCCchhHH
Q 017886 219 KVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSH 298 (364)
Q Consensus 219 kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ~a~~eLa~~~vD~miVVGGknSSNT~r 298 (364)
|++++...+.. .+++.++|++ + + -++.+..... +.. +.+|++||+||-..
T Consensus 31 ki~iv~~~~~~---~~~l~~~L~~----~-g-----~~v~~~~~~~-----------~~~-~~~DlvIvlGGDGT----- 80 (278)
T 1z0s_A 31 RAAVVYKTDGH---VKRIEEALKR----L-E-----VEVELFNQPS-----------EEL-ENFDFIVSVGGDGT----- 80 (278)
T ss_dssp EEEEEESSSTT---HHHHHHHHHH----T-T-----CEEEEESSCC-----------GGG-GGSSEEEEEECHHH-----
T ss_pred EEEEEeCCcHH---HHHHHHHHHH----C-C-----CEEEEccccc-----------ccc-CCCCEEEEECCCHH-----
Confidence 68999987765 6667777765 1 1 1121111110 122 36899999999643
Q ss_pred HHHHHHhhC--CCeEEeC
Q 017886 299 LQEIAEDRG--IPSYWID 314 (364)
Q Consensus 299 L~eia~~~~--~~t~~Ie 314 (364)
+...++... +|.+=|.
T Consensus 81 ~L~aa~~~~~~~PilGIN 98 (278)
T 1z0s_A 81 ILRILQKLKRCPPIFGIN 98 (278)
T ss_dssp HHHHHTTCSSCCCEEEEE
T ss_pred HHHHHHHhCCCCcEEEEC
Confidence 444554432 5666553
No 215
>1vpq_A Hypothetical protein TM1631; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.1.32.1
Probab=20.12 E-value=74 Score=29.65 Aligned_cols=48 Identities=8% Similarity=-0.039 Sum_probs=30.8
Q ss_pred ecccccCHHHHHHHHHcCcEEec-CCcc----ccccccccCCCEEEEcCCCCCH
Q 017886 61 TNEIIHNPTVNKRLEEMAVQNIP-VEEG----KKQFDVVNKGDVVVLPAFGAAV 109 (364)
Q Consensus 61 lG~iIHN~~Vv~~L~~~Gv~~v~-~~~~----~~~~~~l~~g~~VIIrAHGv~~ 109 (364)
.++=-.++.+.+-|++.|+..|- +... ......+ .++.+.+|-||-+.
T Consensus 157 Rh~sW~~~~~~~lL~~~~v~~V~~D~~~~~~~~P~~~~~-t~~~~yvRlHG~~~ 209 (273)
T 1vpq_A 157 RHYSWDREETYEFLRNHGITFVVVDEPKLPGLFPYRPIT-TTDYAYFRFHGRNE 209 (273)
T ss_dssp CBGGGCSHHHHHHHHHHTCEEEEEECCCCTTBCCCCCCC-SSSEEEEEECCCCT
T ss_pred cCchhccHHHHHHHHHcCcEEEEeCCCCCCCCCCccccc-CCCceEEEEeCCCc
Confidence 34434568999999999998663 2111 1111112 36789999999764
No 216
>3h6g_A Glutamate receptor, ionotropic kainate 2; membrane protein glycoprotein, cell junction, cell membrane, glycoprotein, ION transport; HET: NAG TLA; 2.70A {Rattus norvegicus} PDB: 3h6h_A* 3qlv_C 3qlu_C* 3qlt_A* 3olz_A*
Probab=20.07 E-value=43 Score=31.22 Aligned_cols=47 Identities=15% Similarity=0.184 Sum_probs=32.9
Q ss_pred HHHHhhhhCCCEEEEEcCCCCchhHHHHHHHHhhCCCeEEeC-CCCccCC
Q 017886 273 AMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWID-SEKRIGP 321 (364)
Q Consensus 273 a~~eLa~~~vD~miVVGGknSSNT~rL~eia~~~~~~t~~Ie-~~~eL~~ 321 (364)
++.+|..+. +..|||+..|+.+.-+..++.+.+.|..--. +...|..
T Consensus 63 ~a~~l~~~~--V~aiiG~~~S~~~~a~~~~~~~~~ip~is~~~~~~~l~~ 110 (395)
T 3h6g_A 63 KACDQLSLG--VAAIFGPSHSSSANAVQSICNALGVPHIQTRWKHQVSDN 110 (395)
T ss_dssp HHHHHHHHC--CSCEECCSSHHHHHHHHHHHHHTTCCEEECSCCCCCTTC
T ss_pred HHHHhhhcC--cEEEECCCChhHHHHHHHHHhcCCCCeEeeccCcccccc
Confidence 344554344 4567899999999999999999998876443 3334543
No 217
>4ekn_B Aspartate carbamoyltransferase; atcase, aspartate transcarbamoylase, pyrimidine biosynthesis thermostability, substrate channeling; 2.50A {Methanocaldococcus jannaschii} PDB: 3e2p_A 2rgw_A
Probab=20.02 E-value=2e+02 Score=27.22 Aligned_cols=59 Identities=12% Similarity=0.064 Sum_probs=38.6
Q ss_pred CCEEEEcCCCCCHHHHHHHHhcCCcEEec-cCchhHHHHH------HHHHHh-hCCCeEEEEecCCCc
Q 017886 97 GDVVVLPAFGAAVEEMVTLNNKNVQIVDT-TCPWVSKVWT------SVEKHK-KGDYTSIIHGKYSHE 156 (364)
Q Consensus 97 g~~VIIrAHGv~~~v~~~l~~~g~~iiDa-TCP~V~kv~~------~v~~~~-~~Gy~iIIiG~~~Hp 156 (364)
.|.++||...- ..+.+.++..++.||.| ++-.=.=.|. +-+.+. -+|-+|.++||-.|-
T Consensus 97 ~D~iviR~~~~-~~~~~lA~~~~vPVINag~g~~~HPtQ~LaDl~Ti~e~~g~l~glkva~vGD~~~~ 163 (306)
T 4ekn_B 97 ADIIVLRHPSE-GAARLASEYSQVPIINAGDGSNQHPTQTLLDLYTIMREIGRIDGIKIAFVGDLKYG 163 (306)
T ss_dssp CSEEEEECSST-THHHHHHHHCSSCEEESCSSSSCCHHHHHHHHHHHHHHHSCSTTCEEEEESCTTTC
T ss_pred CcEEEEEcCCh-HHHHHHHHhCCCCEEeCCCCCCcCcHHHHHHHHHHHHHhCCcCCCEEEEEcCCCCC
Confidence 57899996543 34555666678999999 5443333333 223332 379999999998763
Done!