BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017887
(364 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin
pdb|1GP6|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin (With 30 Min Exposure To O2)
Length = 356
Score = 183 bits (464), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 107/330 (32%), Positives = 172/330 (52%), Gaps = 18/330 (5%)
Query: 16 IIVPSVQELTNETIINVPPRYVRTDQDPPSVTADTWL-------PSVPLIDLQKLVDD-- 66
+ V V+ L II++P Y+R ++ S+ D +L P VP IDL+ + D
Sbjct: 2 VAVERVESLAKSGIISIPKEYIRPKEELESIN-DVFLEEKKEDGPQVPTIDLKNIESDDE 60
Query: 67 -VRADELERLHSSCREWGFFQVINHGVSSSLLEKLKFEIENFFKLPYEEKKKLW--QVAD 123
+R + +E L + +WG +INHG+ + L+E++K E FF L EEK+K Q
Sbjct: 61 KIRENCIEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATG 120
Query: 124 NHEGFGQLFVVSEEQKLDWSDMFYIATLPLHLRKTDLFHKLPPSLRETLESYSAEMKKLA 183
+G+G + +L+W D F+ P R ++ K P E Y+ ++ LA
Sbjct: 121 KIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLA 180
Query: 184 MTILGHMAKALRMDGEEMRDL---FSDGVQSMRMNYYPPCPQPDKVIGFSPHSDADALTI 240
+ ++ L ++ + + + + M++NYYP CPQP+ +G H+D ALT
Sbjct: 181 TKVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTF 240
Query: 241 LLQLDDTQGLQIRNQGRWVPVKPLPNAFVINIGDIMEIVSNGIYRSIEHRALVNSSKERL 300
+L + GLQ+ +G+WV K +P++ V++IGD +EI+SNG Y+SI HR LVN K R+
Sbjct: 241 ILH-NMVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRI 299
Query: 301 SIATFYSSRIDS-ELGPAPSLIGPSNPAIF 329
S A F D L P P ++ +PA F
Sbjct: 300 SWAVFCEPPKDKIVLKPLPEMVSVESPAKF 329
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Naringenin
Length = 355
Score = 183 bits (464), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 107/330 (32%), Positives = 172/330 (52%), Gaps = 18/330 (5%)
Query: 16 IIVPSVQELTNETIINVPPRYVRTDQDPPSVTADTWL-------PSVPLIDLQKLVDD-- 66
+ V V+ L II++P Y+R ++ S+ D +L P VP IDL+ + D
Sbjct: 1 VAVERVESLAKSGIISIPKEYIRPKEELESIN-DVFLEEKKEDGPQVPTIDLKNIESDDE 59
Query: 67 -VRADELERLHSSCREWGFFQVINHGVSSSLLEKLKFEIENFFKLPYEEKKKLW--QVAD 123
+R + +E L + +WG +INHG+ + L+E++K E FF L EEK+K Q
Sbjct: 60 KIRENCIEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATG 119
Query: 124 NHEGFGQLFVVSEEQKLDWSDMFYIATLPLHLRKTDLFHKLPPSLRETLESYSAEMKKLA 183
+G+G + +L+W D F+ P R ++ K P E Y+ ++ LA
Sbjct: 120 KIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLA 179
Query: 184 MTILGHMAKALRMDGEEMRDL---FSDGVQSMRMNYYPPCPQPDKVIGFSPHSDADALTI 240
+ ++ L ++ + + + + M++NYYP CPQP+ +G H+D ALT
Sbjct: 180 TKVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTF 239
Query: 241 LLQLDDTQGLQIRNQGRWVPVKPLPNAFVINIGDIMEIVSNGIYRSIEHRALVNSSKERL 300
+L + GLQ+ +G+WV K +P++ V++IGD +EI+SNG Y+SI HR LVN K R+
Sbjct: 240 ILH-NMVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRI 298
Query: 301 SIATFYSSRIDS-ELGPAPSLIGPSNPAIF 329
S A F D L P P ++ +PA F
Sbjct: 299 SWAVFCEPPKDKIVLKPLPEMVSVESPAKF 328
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana
(Selenomethionine Substituted)
Length = 356
Score = 178 bits (452), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 107/331 (32%), Positives = 170/331 (51%), Gaps = 20/331 (6%)
Query: 16 IIVPSVQELTNETIINVPPRYVRTDQDPPSVTADTWL-------PSVPLIDLQKLVDD-- 66
+ V V+ L II++P Y+R ++ S+ D +L P VP IDL+ + D
Sbjct: 2 VAVERVESLAKSGIISIPKEYIRPKEELESIN-DVFLEEKKEDGPQVPTIDLKNIESDDE 60
Query: 67 -VRADELERLHSSCREWGFFQVINHGVSSSLLEKLKFEIENFFKLPYEEKKKLW--QVAD 123
+R + +E L + +WG +INHG+ + L E++K E FF L EEK+K Q
Sbjct: 61 KIRENCIEELKKASLDWGVXHLINHGIPADLXERVKKAGEEFFSLSVEEKEKYANDQATG 120
Query: 124 NHEGFGQLFVVSEEQKLDWSDMFYIATLPLHLRKTDLFHKLPPSLRETLESYSAEMKKLA 183
+G+G + +L+W D F+ P R ++ K P E Y+ ++ LA
Sbjct: 121 KIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLA 180
Query: 184 MTILGHMAKALRMDGEEMRDLFSDGVQSM----RMNYYPPCPQPDKVIGFSPHSDADALT 239
+ ++ L ++ + + G++ + ++NYYP CPQP+ +G H+D ALT
Sbjct: 181 TKVFKALSVGLGLEPDRLEKEVG-GLEELLLQXKINYYPKCPQPELALGVEAHTDVSALT 239
Query: 240 ILLQLDDTQGLQIRNQGRWVPVKPLPNAFVINIGDIMEIVSNGIYRSIEHRALVNSSKER 299
+L + GLQ+ +G+WV K +P++ V +IGD +EI+SNG Y+SI HR LVN K R
Sbjct: 240 FILH-NXVPGLQLFYEGKWVTAKCVPDSIVXHIGDTLEILSNGKYKSILHRGLVNKEKVR 298
Query: 300 LSIATFYSSRIDS-ELGPAPSLIGPSNPAIF 329
+S A F D L P P + +PA F
Sbjct: 299 ISWAVFCEPPKDKIVLKPLPEXVSVESPAKF 329
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase
pdb|1WA6|X Chain X, The Structure Of Acc Oxidase
Length = 319
Score = 156 bits (394), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 84/300 (28%), Positives = 153/300 (51%), Gaps = 13/300 (4%)
Query: 56 PLIDLQKLVDDVRADELERLHSSCREWGFFQVINHGVSSSLLEKLKFEIENFFKLPYEEK 115
P+I L K+ RA E + +C WGFF+++NHG+ + + ++ + +K E++
Sbjct: 5 PIISLDKVNGVERAATXEXIKDACENWGFFELVNHGIPREVXDTVEKXTKGHYKKCXEQR 64
Query: 116 KKLWQVADNHEGFGQLFVVSEEQKLDWSDMFYIATLPLHLRKTDLFHKLPPSLRETLESY 175
K + EG V +E DW F++ LP+ L RE +
Sbjct: 65 FKELVASKALEG-----VQAEVTDXDWESTFFLKHLPI--SNISEVPDLDEEYREVXRDF 117
Query: 176 SAEMKKLAMTILGHMAKALRMDGEEMRDLF--SDGVQ-SMRMNYYPPCPQPDKVIGFSPH 232
+ ++KLA +L + + L ++ +++ F S G +++ YPPCP+PD + G H
Sbjct: 118 AKRLEKLAEELLDLLCENLGLEKGYLKNAFYGSKGPNFGTKVSNYPPCPKPDLIKGLRAH 177
Query: 233 SDADALTILLQLDDTQGLQIRNQGRWVPVKPLPNAFVINIGDIMEIVSNGIYRSIEHRAL 292
+DA + +L Q D GLQ+ G+W+ V P ++ V+N+GD +E+++NG Y+S+ HR +
Sbjct: 178 TDAGGIILLFQDDKVSGLQLLKDGQWIDVPPXRHSIVVNLGDQLEVITNGKYKSVXHRVI 237
Query: 293 VNSSKERLSIATFYSSRIDSELGPAPSLI---GPSNPAIFRRMPLEEYFKEFFARRLNGK 349
R S+A+FY+ D+ + PAP+L+ N ++ + ++Y K + + K
Sbjct: 238 AQKDGARXSLASFYNPGSDAVIYPAPALVEKEAEENKQVYPKFVFDDYXKLYAGLKFQAK 297
>pdb|3OOX|A Chain A, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
pdb|3OOX|B Chain B, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
Length = 312
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 69/289 (23%), Positives = 128/289 (44%), Gaps = 21/289 (7%)
Query: 73 ERLHSSCREWGFFQVINHGVSSSLLEKLKFEIENFFKLPYEEKKKLWQVADNHEGFGQLF 132
+ L +S +GF + ++ + + ++ + FF LP E KK+ V G+ F
Sbjct: 24 QELGASFERYGFAVLSDYDLDQARIDAAVDSAKAFFALPVETKKQYAGVKGGARGY-IPF 82
Query: 133 VVSEEQKLDWSDM--FYIAT--LPLHLR-----KTDLFHKLPPSLRETLESYSAEMKKLA 183
V + D D+ F+ LP R +++ P+ + + +
Sbjct: 83 GVETAKGADHYDLKEFWHXGRDLPPGHRFRAHXADNVWPAEIPAFKHDVSWLYNSLDGXG 142
Query: 184 MTILGHMAKALRMDGEEMRDLFSDGVQSMRMNYYPPCPQPDKVIGFSPHSDADALTILLQ 243
+L +A L+++ + + DG +R+ +YPP P+ + H D + +T+LL
Sbjct: 143 GKVLEAIATYLKLERDFFKPTVQDGNSVLRLLHYPPIPKDATGVRAGAHGDINTITLLLG 202
Query: 244 LDDTQGLQIRNQ-GRWVPVKPLPNAFVINIGDIMEIVSNGIYRSIEHRALVNSSKERLSI 302
++ GL++ ++ G+W+P+ P P VINIGD +E ++N + S HR +VN ER +
Sbjct: 203 AEEG-GLEVLDRDGQWLPINPPPGCLVINIGDXLERLTNNVLPSTVHR-VVNPPPERRGV 260
Query: 303 ATFYSSRI-----DSELGPAPSLIGPSNPAIFRRMPLEEYFKEFFARRL 346
+ + D E+ + + NP R P EF +RL
Sbjct: 261 PRYSTPFFLHFASDYEIKTLQNCVTAENP---DRYPESITADEFLQQRL 306
>pdb|3ON7|A Chain A, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|B Chain B, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|C Chain C, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|D Chain D, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
Length = 280
Score = 65.5 bits (158), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 68/275 (24%), Positives = 121/275 (44%), Gaps = 39/275 (14%)
Query: 64 VDDVRADELERLHSSCREWGFFQVINHGVSSSLLEKLKFEIENFFKLPYEEKKKLWQVAD 123
+D AD +R S RE GF + NH + L+E++ E + FF E K + +
Sbjct: 7 IDYRAADSAKRFVESLRETGFGVLSNHPIDKELVERIYTEWQAFFN--SEAKNEFXFNRE 64
Query: 124 NHEGFGQLFVVSEEQKLDWSDMF-YIATLPLHLRKTDLFHKLPPSLRETLESYSAEMKKL 182
H+GF + + D+ Y P + ++P SLR + +Y + L
Sbjct: 65 THDGFFPASISETAKGHTVKDIKEYYHVYP--------WGRIPDSLRANILAYYEKANTL 116
Query: 183 AMTILGHMAKALRMDGEEMRDLFSDGVQS---------MRMNYYPPCPQPDK--VIGFSP 231
A +L + +E++ FS + +R+ +YPP ++ I +
Sbjct: 117 ASELLEWIET---YSPDEIKAKFSIPLPEXIANSHKTLLRILHYPPXTGDEEXGAIRAAA 173
Query: 232 HSDADALTILLQLDDTQGLQIRNQ-GRWVPVKPLPNAFVINIGDIMEIVSNGIYRSIEHR 290
H D + +T+L ++ GLQ++ + G W+ V +INIGD ++ S+G + S HR
Sbjct: 174 HEDINLITVLPTANE-PGLQVKAKDGSWLDVPSDFGNIIINIGDXLQEASDGYFPSTSHR 232
Query: 291 AL----VNSSKERLSIATFYSSRIDSELGPAPSLI 321
+ + +K R+S+ F L P PS++
Sbjct: 233 VINPEGTDKTKSRISLPLF--------LHPHPSVV 259
>pdb|2BJS|A Chain A, Isopenicillin N Synthase C-Terminal Truncation Mutant
Length = 325
Score = 54.3 bits (129), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 72/294 (24%), Positives = 120/294 (40%), Gaps = 36/294 (12%)
Query: 54 SVPLIDLQKLVDDVRADEL---ERLHSSCREWGFFQVINHGVSSSLLEKLKFEIENFFKL 110
+VP ID+ L D +A ++ +++ ++ R+ GFF +NHG++ L + E +
Sbjct: 8 NVPKIDVSPLFGDDQAAKMRVAQQIDAASRDTGFFYAVNHGINVQRLSQKTKEFH--MSI 65
Query: 111 PYEEKKKLWQVADNHEGFGQL---FVVSEEQKLDWSDMFYI------------ATLPLHL 155
EEK L A N E Q+ + +S K Y+ A P H
Sbjct: 66 TPEEKWDLAIRAYNKEHQDQVRAGYYLSIPGKKAVESFCYLNPNFTPDHPRIQAKTPTHE 125
Query: 156 RKTDLFHKLPPSLRETLESYSAEMKKLAMTILGHMAKALRMDGEEMRDLFS--DGVQSMR 213
P ++ E Y ++ L+ +L A AL + F D + S+
Sbjct: 126 VNVWPDETKHPGFQDFAEQYYWDVFGLSSALLKGYALALGKEENFFARHFKPDDTLASVV 185
Query: 214 MNYYPPC-PQPDKVI---------GFSPHSDADALTILLQLDDTQGLQIRNQGRWVPVKP 263
+ YP P P+ I F H D +T+L Q + Q LQ+ + ++
Sbjct: 186 LIRYPYLDPYPEAAIKTAADGTKLSFEWHEDVSLITVLYQ-SNVQNLQVETAAGYQDIEA 244
Query: 264 LPNAFVINIGDIMEIVSNGIYRSIEHRA-LVNSSKERLSIATFYSSRIDSELGP 316
++IN G M ++N Y++ HR VN+ ER S+ F + DS + P
Sbjct: 245 DDTGYLINCGSYMAHLTNNYYKAPIHRVKWVNA--ERQSLPFFVNLGYDSVIDP 296
>pdb|1IPS|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1IPS|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1QJE|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Ip1 -
Fe Complex)
pdb|1QJF|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Monocyclic Sulfoxide - Fe Complex)
pdb|1QIQ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acmc
Fe Complex)
pdb|1HB4|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB3|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB2|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB1|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Acov Fe Complex)
pdb|1ODM|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-vinylglycine Fe Complex)
pdb|1ODN|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Oxygen-Exposed Product From Anaerobic Ac-Vinylglycine
Fe Complex)
pdb|1OBN|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe-no Complex
pdb|1OC1|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe Complex
pdb|1UZW|A Chain A, Isopenicillin N Synthase With
L-D-(A-Aminoadipoyl)-L-Cysteinyl-D-Isodehydrovaline
pdb|1W03|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Glycine-Fe
Complex
pdb|1W04|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-Cysteinyl-Glycine-Fe-No Complex
pdb|1W05|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
Complex
pdb|1W06|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
No Complex
pdb|2BU9|A Chain A, Isopenicillin N Synthase Complexed With L-Aminoadipoyl-L-
Cysteinyl-L-Hexafluorovaline
pdb|1W3V|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Anaerobic)
pdb|1W3X|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Oxygen Exposed 5
Minutes 20 Bar)
pdb|2IVI|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-methyl-cyclopropylglycine Fe Complex)
pdb|2IVJ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Ac-Cyclopropylglycine Fe Complex)
pdb|1BK0|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acv-Fe
Complex)
pdb|1BLZ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Acv-Fe- No Complex)
pdb|2JB4|A Chain A, Isopenicillin N Synthase With A 2-Thiabicycloheptan-6-One
Product Analogue
pdb|2VAU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
Unexposed)
pdb|2VBB|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
35minutes Oxygen Exposure)
pdb|2VBD|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,l,l-
Acomp (unexposed)
pdb|2VBP|A Chain A, Isopenicillin N Synthase With Substrate Analogue
L,L,L-Acab (Unexposed)
pdb|2VCM|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov
pdb|2VE1|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov (
Oxygen Exposed 1min 20bar)
pdb|2WO7|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,L,D-
Acd2ab (Unexposed)
pdb|2Y6F|A Chain A, Isopenicillin N Synthase With
Ac-D-S-Methyl-3r-Methylcysteine
pdb|2Y60|A Chain A, Isopenicillin N Synthase With Ac-D-Methionine
pdb|2Y86|A Chain A, Isopenicillin N Synthase With Ac-O-Methyl-D-Threonine
pdb|3ZKU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Ahcv
Length = 331
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 72/294 (24%), Positives = 120/294 (40%), Gaps = 36/294 (12%)
Query: 54 SVPLIDLQKLVDDVRADEL---ERLHSSCREWGFFQVINHGVSSSLLEKLKFEIENFFKL 110
+VP ID+ L D +A ++ +++ ++ R+ GFF +NHG++ L + E +
Sbjct: 8 NVPKIDVSPLFGDDQAAKMRVAQQIDAASRDTGFFYAVNHGINVQRLSQKTKEFH--MSI 65
Query: 111 PYEEKKKLWQVADNHEGFGQL---FVVSEEQKLDWSDMFYI------------ATLPLHL 155
EEK L A N E Q+ + +S K Y+ A P H
Sbjct: 66 TPEEKWDLAIRAYNKEHQDQVRAGYYLSIPGKKAVESFCYLNPNFTPDHPRIQAKTPTHE 125
Query: 156 RKTDLFHKLPPSLRETLESYSAEMKKLAMTILGHMAKALRMDGEEMRDLFS--DGVQSMR 213
P ++ E Y ++ L+ +L A AL + F D + S+
Sbjct: 126 VNVWPDETKHPGFQDFAEQYYWDVFGLSSALLKGYALALGKEENFFARHFKPDDTLASVV 185
Query: 214 MNYYPPC-PQPDKVI---------GFSPHSDADALTILLQLDDTQGLQIRNQGRWVPVKP 263
+ YP P P+ I F H D +T+L Q + Q LQ+ + ++
Sbjct: 186 LIRYPYLDPYPEAAIKTAADGTKLSFEWHEDVSLITVLYQ-SNVQNLQVETAAGYQDIEA 244
Query: 264 LPNAFVINIGDIMEIVSNGIYRSIEHRA-LVNSSKERLSIATFYSSRIDSELGP 316
++IN G M ++N Y++ HR VN+ ER S+ F + DS + P
Sbjct: 245 DDTGYLINCGSYMAHLTNNYYKAPIHRVKWVNA--ERQSLPFFVNLGYDSVIDP 296
>pdb|1T0B|A Chain A, Structure Of Thua-Like Protein From Bacillus
Stearothermophilus
pdb|1T0B|B Chain B, Structure Of Thua-Like Protein From Bacillus
Stearothermophilus
pdb|1T0B|C Chain C, Structure Of Thua-Like Protein From Bacillus
Stearothermophilus
pdb|1T0B|D Chain D, Structure Of Thua-Like Protein From Bacillus
Stearothermophilus
pdb|1T0B|E Chain E, Structure Of Thua-Like Protein From Bacillus
Stearothermophilus
pdb|1T0B|F Chain F, Structure Of Thua-Like Protein From Bacillus
Stearothermophilus
pdb|1T0B|G Chain G, Structure Of Thua-Like Protein From Bacillus
Stearothermophilus
pdb|1T0B|H Chain H, Structure Of Thua-Like Protein From Bacillus
Stearothermophilus
Length = 252
Score = 33.1 bits (74), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
Query: 65 DDVRADELERLHSSCREWGFFQVINHGVSSSLLEKLKFEIENFFKLPYEEKKKLWQVADN 124
D+V+ + +ER+H E V++ G S + +KL N +EK++LW VA
Sbjct: 80 DEVKDEVVERVHRRVLEGMGLIVLHSGHFSKIFKKLMGTTCNLKWREADEKERLWVVAPG 139
Query: 125 H---EGFGQLFVVSEEQ 138
H EG G + +E+
Sbjct: 140 HPIVEGIGPYIELEQEE 156
>pdb|1QB4|A Chain A, Crystal Structure Of Mn(2+)-Bound Phosphoenolpyruvate
Carboxylase
pdb|1JQN|A Chain A, Crystal Structure Of E.Coli Phosphoenolpyruvate
Carboxylase In Complex With Mn2+ And Dcdp
pdb|1FIY|A Chain A, Three-Dimensional Structure Of Phosphoenolpyruvate
Carboxylase From Escherichia Coli At 2.8 A Resolution
Length = 883
Score = 32.3 bits (72), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 70/156 (44%), Gaps = 27/156 (17%)
Query: 60 LQKLVDDVRADELERLHSSCREWGFFQVINHGVSSSLLEKLKFEIENFFKLPYEEK---K 116
LQK+V+D + ELE + CR+W FF +LE + + + + Y+++ K
Sbjct: 738 LQKVVEDGKQSELEAM---CRDWPFF-----STRLGMLEMVFAKADLWLAEYYDQRLVDK 789
Query: 117 KLWQVAD-----NHEGFGQLFVVSEEQKLDWSDMFYIA---------TLPLHLRKTDLFH 162
LW + E + ++ + L +D+ +IA T PL++ + +L H
Sbjct: 790 ALWPLGKELRNLQEEDIKVVLAIANDSHL-MADLPWIAESIQLRNIYTDPLNVLQAELLH 848
Query: 163 KLPPSLRETLESYSAEMKKLAMTILGHMAKALRMDG 198
+ + +E E + L +TI G +A +R G
Sbjct: 849 RSRQAEKEGQEPDPRVEQALMVTIAG-IAAGMRNTG 883
>pdb|2UY2|A Chain A, Sccts1_apo Crystal Structure
pdb|2UY3|A Chain A, Sccts1_8-Chlorotheophylline Crystal Structure
pdb|2UY4|A Chain A, Sccts1_acetazolamide Crystal Structure
pdb|2UY5|A Chain A, Sccts1_kinetin Crystal Structure
Length = 294
Score = 31.6 bits (70), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 5/42 (11%)
Query: 187 LGHMAKALRMDGEEMRDLFSDGVQSMRMNYYPPCPQPDKVIG 228
+G+ A A ++ R LF++G + ++ P CP PD +G
Sbjct: 141 VGYSALATKL-----RTLFAEGTKQYYLSAAPQCPYPDASVG 177
>pdb|2FBT|A Chain A, Wrn Exonuclease
pdb|2FBV|A Chain A, Wrn Exonuclease, Mn Complex
pdb|2FBX|A Chain A, Wrn Exonuclease, Mg Complex
pdb|2FBY|A Chain A, Wrn Exonuclease, Eu Complex
pdb|2FC0|A Chain A, Wrn Exonuclease, Mn Dgmp Complex
Length = 205
Score = 31.6 bits (70), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Query: 79 CRE-WGFFQVINHGVSSSLLEKLKFEIENFFKLPYEEKKKLWQVADNHEGF 128
C E W ++ H + LL+ N+ K P E +KL+ D + GF
Sbjct: 140 CTETWSLNSLVKHLLGKQLLKDKSIRCSNWSKFPLTEDQKLYAATDAYAGF 190
>pdb|3THO|B Chain B, Crystal Structure Of Mre11:rad50 In Its AtpADP BOUND STATE
Length = 379
Score = 31.2 bits (69), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 56/116 (48%), Gaps = 21/116 (18%)
Query: 33 PPRYVRTDQDPPSVTADTWLPSVPLIDLQKLVDDVRADELERLHSSCREW-GFFQVINHG 91
PPRY R D P +PL L D A L+ + SCR + G+ +V+ +
Sbjct: 253 PPRYERIDASP-----------LPLKTLYYKKIDTSA--LKSIRDSCRNFPGYVRVV-YE 298
Query: 92 VSSSLLEKLKFEIENFFKLPYEEKKKLWQV-ADNHEGFGQLFVVSEEQKLDWSDMF 146
S +L L EI+N K+ + ++++ +V ++ E F + E KLD+ ++F
Sbjct: 299 EDSGILPDLMGEIDNLVKIERKSRREIEEVLRESPEEFKE-----ELDKLDYFELF 349
>pdb|3QG5|C Chain C, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
pdb|3QG5|D Chain D, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
Length = 379
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 55/116 (47%), Gaps = 21/116 (18%)
Query: 33 PPRYVRTDQDPPSVTADTWLPSVPLIDLQKLVDDVRADELERLHSSCREW-GFFQVINHG 91
PPRY R D P +PL L D A L+ + CR + G+ +V+ +
Sbjct: 253 PPRYERIDASP-----------LPLKTLYYKKIDTSA--LKSIRDFCRNFPGYVRVV-YE 298
Query: 92 VSSSLLEKLKFEIENFFKLPYEEKKKLWQV-ADNHEGFGQLFVVSEEQKLDWSDMF 146
S +L L EI+N K+ + ++++ +V ++ E F + E KLD+ ++F
Sbjct: 299 EDSGILPDLXGEIDNLVKIERKSRREIEEVLRESPEEFKE-----ELDKLDYFELF 349
>pdb|3THN|A Chain A, Crystal Structure Of Mre11 Core With Manganese
Length = 319
Score = 28.1 bits (61), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 33/78 (42%), Gaps = 13/78 (16%)
Query: 33 PPRYVRTDQDPPSVTADTWLPSVPLIDLQKLVDDVRADELERLHSSCREWGFFQVINHGV 92
PPRY R D P +PL L D A L+ + SCR + + + +
Sbjct: 253 PPRYERIDASP-----------LPLKTLYYKKIDTSA--LKSIRDSCRNFPGYVRVVYEE 299
Query: 93 SSSLLEKLKFEIENFFKL 110
S +L L EI+N K+
Sbjct: 300 DSGILPDLMGEIDNLVKI 317
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,871,037
Number of Sequences: 62578
Number of extensions: 454965
Number of successful extensions: 1094
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1068
Number of HSP's gapped (non-prelim): 19
length of query: 364
length of database: 14,973,337
effective HSP length: 100
effective length of query: 264
effective length of database: 8,715,537
effective search space: 2300901768
effective search space used: 2300901768
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)