Query 017888
Match_columns 364
No_of_seqs 188 out of 1539
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 04:17:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017888.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017888hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd07587 ML_beta-AS mammalian-l 100.0 6.2E-52 1.3E-56 402.5 30.4 275 71-355 52-359 (363)
2 TIGR03381 agmatine_aguB N-carb 100.0 3.3E-51 7.1E-56 385.3 30.9 266 83-355 1-278 (279)
3 PLN02798 nitrilase 100.0 2.2E-50 4.7E-55 381.5 30.4 270 79-353 7-282 (286)
4 PRK10438 C-N hydrolase family 100.0 4.7E-50 1E-54 373.3 29.9 251 82-353 3-255 (256)
5 cd07568 ML_beta-AS_like mammal 100.0 6.6E-50 1.4E-54 378.2 31.4 266 81-356 2-284 (287)
6 PLN00202 beta-ureidopropionase 100.0 3.6E-50 7.8E-55 394.2 30.2 267 80-357 84-382 (405)
7 cd07572 nit Nit1, Nit 2, and r 100.0 5E-50 1.1E-54 374.4 28.4 263 84-349 1-265 (265)
8 cd07564 nitrilases_CHs Nitrila 100.0 1.1E-49 2.4E-54 378.5 28.1 265 83-357 1-295 (297)
9 PLN02504 nitrilase 100.0 9.8E-49 2.1E-53 378.3 31.4 266 80-359 22-325 (346)
10 PLN02747 N-carbamolyputrescine 100.0 1.2E-48 2.7E-53 371.2 31.4 273 79-358 3-291 (296)
11 cd07573 CPA N-carbamoylputresc 100.0 1.4E-48 3E-53 368.5 30.6 267 83-356 1-282 (284)
12 cd07583 nitrilase_5 Uncharacte 100.0 1.1E-48 2.5E-53 363.1 28.8 252 84-349 1-253 (253)
13 cd07576 R-amidase_like Pseudom 100.0 4.2E-48 9.1E-53 359.2 29.6 252 84-351 1-254 (254)
14 cd07580 nitrilase_2 Uncharacte 100.0 3.1E-48 6.8E-53 363.3 28.1 257 84-353 1-268 (268)
15 KOG0807 Carbon-nitrogen hydrol 100.0 1.6E-49 3.4E-54 348.5 17.6 270 83-357 16-292 (295)
16 cd07579 nitrilase_1_R2 Second 100.0 2.3E-48 5E-53 366.1 25.1 245 84-353 1-268 (279)
17 cd07569 DCase N-carbamyl-D-ami 100.0 2.7E-47 5.9E-52 363.0 29.5 273 82-357 3-301 (302)
18 cd07585 nitrilase_7 Uncharacte 100.0 6.2E-47 1.3E-51 353.0 29.1 254 84-353 1-261 (261)
19 cd07565 aliphatic_amidase alip 100.0 2E-46 4.4E-51 354.9 30.8 254 83-358 1-269 (291)
20 cd07584 nitrilase_6 Uncharacte 100.0 2.1E-46 4.5E-51 348.9 29.7 253 84-349 1-257 (258)
21 cd07581 nitrilase_3 Uncharacte 100.0 2E-46 4.3E-51 348.3 28.9 249 85-349 1-255 (255)
22 cd07574 nitrilase_Rim1_like Un 100.0 1.4E-46 3E-51 354.3 27.1 260 83-352 1-280 (280)
23 cd07577 Ph0642_like Pyrococcus 100.0 1.7E-46 3.7E-51 349.9 27.4 251 84-353 1-259 (259)
24 COG0388 Predicted amidohydrola 100.0 9.5E-46 2.1E-50 347.6 30.3 262 82-353 2-267 (274)
25 cd07578 nitrilase_1_R1 First n 100.0 4.6E-46 1E-50 346.8 27.9 252 83-352 1-258 (258)
26 cd07575 Xc-1258_like Xanthomon 100.0 1E-45 2.3E-50 343.3 28.9 249 83-350 1-250 (252)
27 cd07586 nitrilase_8 Uncharacte 100.0 1.8E-45 3.8E-50 344.7 28.0 256 84-354 1-266 (269)
28 cd07570 GAT_Gln-NAD-synth Glut 100.0 1.4E-45 3E-50 343.9 24.4 255 84-350 1-258 (261)
29 KOG0806 Carbon-nitrogen hydrol 100.0 1.8E-46 3.8E-51 344.6 17.6 280 79-358 10-296 (298)
30 PRK13287 amiF formamidase; Pro 100.0 4E-44 8.6E-49 344.5 30.6 263 79-359 10-312 (333)
31 cd07567 biotinidase_like bioti 100.0 8.8E-45 1.9E-49 343.5 25.2 239 84-337 2-280 (299)
32 PRK13286 amiE acylamide amidoh 100.0 8.5E-44 1.8E-48 342.8 29.4 257 81-354 11-285 (345)
33 cd07582 nitrilase_4 Uncharacte 100.0 3.2E-43 7E-48 333.8 29.7 261 84-346 2-287 (294)
34 cd07197 nitrilase Nitrilase su 100.0 4.8E-43 1.1E-47 324.3 29.5 251 85-348 1-252 (253)
35 PRK02628 nadE NAD synthetase; 100.0 8.9E-42 1.9E-46 355.5 29.9 259 80-349 10-295 (679)
36 PRK13981 NAD synthetase; Provi 100.0 5.1E-41 1.1E-45 343.2 28.2 238 83-334 1-243 (540)
37 cd07571 ALP_N-acyl_transferase 100.0 3.4E-41 7.4E-46 316.1 23.9 227 83-334 1-251 (270)
38 PLN02339 NAD+ synthase (glutam 100.0 1.1E-39 2.4E-44 339.3 27.8 256 81-348 2-290 (700)
39 cd07566 ScNTA1_like Saccharomy 100.0 1.3E-37 2.8E-42 294.7 22.6 219 84-310 1-265 (295)
40 PRK00302 lnt apolipoprotein N- 100.0 3.9E-35 8.5E-40 297.8 21.4 228 81-333 218-470 (505)
41 TIGR00546 lnt apolipoprotein N 100.0 1.1E-34 2.5E-39 285.7 19.0 211 81-315 158-391 (391)
42 KOG0805 Carbon-nitrogen hydrol 100.0 6.1E-34 1.3E-38 251.0 21.1 267 79-359 14-318 (337)
43 PF00795 CN_hydrolase: Carbon- 100.0 5.4E-32 1.2E-36 239.3 15.8 168 84-262 1-186 (186)
44 PRK12291 apolipoprotein N-acyl 100.0 4E-30 8.6E-35 254.1 20.8 198 83-313 195-413 (418)
45 KOG0808 Carbon-nitrogen hydrol 100.0 2.1E-28 4.4E-33 217.5 19.2 264 82-355 73-369 (387)
46 COG0815 Lnt Apolipoprotein N-a 100.0 1.8E-28 3.9E-33 246.9 21.3 232 78-334 223-482 (518)
47 PRK13825 conjugal transfer pro 99.9 6.8E-24 1.5E-28 207.1 19.2 190 83-293 186-388 (388)
48 KOG2303 Predicted NAD synthase 99.8 2.3E-20 4.9E-25 179.2 10.0 248 80-342 2-285 (706)
49 PLN02798 nitrilase 84.3 6.3 0.00014 37.0 8.9 74 244-317 33-118 (286)
50 cd07581 nitrilase_3 Uncharacte 81.7 9.4 0.0002 34.9 8.9 74 243-318 20-106 (255)
51 PLN00202 beta-ureidopropionase 79.7 9.9 0.00021 37.9 8.7 75 244-318 117-206 (405)
52 cd07572 nit Nit1, Nit 2, and r 78.7 13 0.00029 34.0 8.9 74 244-317 22-108 (265)
53 cd07587 ML_beta-AS mammalian-l 78.2 12 0.00026 36.7 8.7 75 244-318 94-185 (363)
54 cd07565 aliphatic_amidase alip 78.1 17 0.00038 34.2 9.6 69 108-193 163-232 (291)
55 cd07584 nitrilase_6 Uncharacte 77.7 16 0.00036 33.3 9.1 74 244-318 23-111 (258)
56 cd07576 R-amidase_like Pseudom 76.4 20 0.00044 32.6 9.3 72 244-318 23-106 (254)
57 cd07582 nitrilase_4 Uncharacte 75.6 19 0.0004 33.9 9.0 67 252-318 41-124 (294)
58 cd07564 nitrilases_CHs Nitrila 73.9 20 0.00044 33.7 8.9 72 244-318 24-120 (297)
59 cd07568 ML_beta-AS_like mammal 73.7 17 0.00037 33.9 8.3 73 244-318 34-122 (287)
60 cd07566 ScNTA1_like Saccharomy 73.6 21 0.00045 33.9 8.8 74 245-318 24-116 (295)
61 cd07583 nitrilase_5 Uncharacte 73.6 21 0.00046 32.5 8.7 73 244-318 23-106 (253)
62 cd07580 nitrilase_2 Uncharacte 73.1 27 0.00058 32.2 9.3 74 108-192 154-228 (268)
63 PLN02747 N-carbamolyputrescine 73.0 18 0.00038 34.1 8.2 72 244-318 29-116 (296)
64 cd07197 nitrilase Nitrilase su 72.1 24 0.00053 31.8 8.7 71 244-317 22-106 (253)
65 cd07585 nitrilase_7 Uncharacte 71.4 21 0.00045 32.8 8.1 73 108-193 150-223 (261)
66 PF00795 CN_hydrolase: Carbon- 70.5 21 0.00046 30.6 7.6 70 245-317 26-114 (186)
67 cd07577 Ph0642_like Pyrococcus 68.8 29 0.00064 31.7 8.5 66 108-193 151-221 (259)
68 cd07567 biotinidase_like bioti 67.8 23 0.0005 33.7 7.7 67 110-194 192-260 (299)
69 TIGR03381 agmatine_aguB N-carb 67.6 46 0.001 30.7 9.7 75 108-192 160-239 (279)
70 cd07586 nitrilase_8 Uncharacte 67.6 39 0.00085 31.0 9.1 73 110-192 155-228 (269)
71 cd07573 CPA N-carbamoylputresc 67.0 35 0.00076 31.6 8.8 73 244-318 23-111 (284)
72 cd07570 GAT_Gln-NAD-synth Glut 67.0 23 0.00051 32.4 7.5 69 110-193 158-227 (261)
73 PRK13286 amiE acylamide amidoh 66.7 43 0.00093 32.6 9.4 71 106-193 174-245 (345)
74 cd07571 ALP_N-acyl_transferase 65.4 24 0.00053 32.7 7.3 72 245-317 31-104 (270)
75 PRK09856 fructoselysine 3-epim 64.9 25 0.00054 32.5 7.3 64 96-167 85-148 (275)
76 PLN02504 nitrilase 62.1 52 0.0011 31.9 9.1 71 245-318 49-149 (346)
77 cd07569 DCase N-carbamyl-D-ami 61.0 53 0.0011 31.0 8.8 75 244-318 29-123 (302)
78 TIGR00530 AGP_acyltrn 1-acyl-s 60.2 34 0.00074 27.2 6.5 52 100-166 75-126 (130)
79 cd07578 nitrilase_1_R1 First n 59.5 52 0.0011 30.1 8.3 70 244-314 24-107 (258)
80 PRK13981 NAD synthetase; Provi 59.1 41 0.00089 34.7 8.3 71 108-193 155-226 (540)
81 PRK15018 1-acyl-sn-glycerol-3- 58.5 34 0.00073 31.5 6.8 58 94-166 119-176 (245)
82 PRK13210 putative L-xylulose 5 57.5 42 0.00091 31.0 7.4 64 96-167 89-152 (284)
83 smart00563 PlsC Phosphate acyl 56.9 39 0.00084 26.1 6.2 53 98-166 60-112 (118)
84 COG0388 Predicted amidohydrola 55.7 72 0.0016 29.4 8.7 66 111-192 163-230 (274)
85 cd07579 nitrilase_1_R2 Second 55.2 83 0.0018 29.4 9.0 68 244-314 22-98 (279)
86 PF01553 Acyltransferase: Acyl 54.9 27 0.00059 27.9 5.0 51 100-165 77-127 (132)
87 PF09587 PGA_cap: Bacterial ca 54.0 1.4E+02 0.0031 27.2 10.3 73 220-292 119-224 (250)
88 PRK13287 amiF formamidase; Pro 50.9 91 0.002 30.1 8.7 66 252-318 51-129 (333)
89 TIGR00542 hxl6Piso_put hexulos 50.6 51 0.0011 30.6 6.8 64 96-167 89-152 (279)
90 PRK13209 L-xylulose 5-phosphat 49.6 61 0.0013 30.0 7.1 64 96-167 94-157 (283)
91 cd07575 Xc-1258_like Xanthomon 46.7 1.1E+02 0.0023 27.9 8.2 68 245-316 25-102 (252)
92 cd00019 AP2Ec AP endonuclease 46.1 44 0.00096 31.0 5.6 63 96-167 80-142 (279)
93 PRK10438 C-N hydrolase family 43.8 1E+02 0.0022 28.3 7.5 64 113-193 154-219 (256)
94 PLN02274 inosine-5'-monophosph 43.0 1.5E+02 0.0032 30.6 9.1 59 230-290 237-295 (505)
95 KOG0806 Carbon-nitrogen hydrol 42.7 17 0.00038 34.4 2.2 42 158-201 110-151 (298)
96 KOG2792 Putative cytochrome C 42.3 56 0.0012 30.4 5.3 98 98-198 157-262 (280)
97 COG0252 AnsB L-asparaginase/ar 41.8 1.3E+02 0.0028 29.4 8.1 63 230-294 230-293 (351)
98 PF01784 NIF3: NIF3 (NGG1p int 40.6 92 0.002 28.5 6.6 58 233-291 34-95 (241)
99 KOG0807 Carbon-nitrogen hydrol 40.2 73 0.0016 29.4 5.6 76 243-318 37-125 (295)
100 cd01821 Rhamnogalacturan_acety 39.4 1.3E+02 0.0028 26.0 7.2 63 95-165 88-150 (198)
101 cd07990 LPLAT_LCLAT1-like Lyso 39.3 1.5E+02 0.0031 25.8 7.5 49 99-166 87-137 (193)
102 cd07986 LPLAT_ACT14924-like Ly 39.2 70 0.0015 28.4 5.5 59 98-166 83-141 (210)
103 PF01261 AP_endonuc_2: Xylose 39.2 59 0.0013 28.0 5.0 66 96-167 66-131 (213)
104 TIGR00546 lnt apolipoprotein N 35.7 1.1E+02 0.0024 30.1 6.7 66 253-318 197-265 (391)
105 PF09587 PGA_cap: Bacterial ca 34.8 1.9E+02 0.0041 26.4 7.8 55 101-170 171-225 (250)
106 PF08821 CGGC: CGGC domain; I 34.3 1.4E+02 0.003 23.8 5.9 55 100-168 51-106 (107)
107 smart00870 Asparaginase Aspara 34.2 1.9E+02 0.0042 27.7 8.0 63 230-294 212-274 (323)
108 PRK09461 ansA cytoplasmic aspa 33.8 2E+02 0.0044 27.7 8.1 66 230-295 210-275 (335)
109 cd03012 TlpA_like_DipZ_like Tl 33.0 2.4E+02 0.0052 22.4 7.4 91 84-193 24-121 (126)
110 COG1131 CcmA ABC-type multidru 32.4 1.3E+02 0.0029 28.3 6.5 73 107-194 147-219 (293)
111 smart00481 POLIIIAc DNA polyme 32.2 1.5E+02 0.0034 20.7 5.4 45 102-167 16-60 (67)
112 cd02968 SCO SCO (an acronym fo 32.0 1.4E+02 0.003 24.0 5.9 41 153-195 98-141 (142)
113 cd07988 LPLAT_ABO13168-like Ly 31.7 1.1E+02 0.0024 26.0 5.3 35 114-166 95-129 (163)
114 cd07993 LPLAT_DHAPAT-like Lyso 31.1 1.7E+02 0.0036 25.8 6.6 27 101-127 88-114 (205)
115 PF07355 GRDB: Glycine/sarcosi 30.7 1.5E+02 0.0032 28.9 6.4 62 229-290 48-117 (349)
116 PRK09437 bcp thioredoxin-depen 30.1 2.4E+02 0.0053 23.2 7.2 38 84-121 31-71 (154)
117 COG4586 ABC-type uncharacteriz 30.0 1.9E+02 0.004 27.6 6.7 72 107-193 167-238 (325)
118 PRK09997 hydroxypyruvate isome 29.3 1.8E+02 0.0039 26.5 6.7 61 96-166 80-142 (258)
119 cd03293 ABC_NrtD_SsuB_transpor 28.7 2.8E+02 0.006 24.5 7.7 73 107-193 142-215 (220)
120 PTZ00261 acyltransferase; Prov 27.9 1.8E+02 0.0039 28.5 6.5 52 100-165 201-252 (355)
121 PF09142 TruB_C: tRNA Pseudour 27.9 66 0.0014 22.4 2.6 35 276-320 9-43 (56)
122 COG1120 FepC ABC-type cobalami 27.7 1.7E+02 0.0038 27.2 6.2 76 101-192 143-219 (258)
123 PF02630 SCO1-SenC: SCO1/SenC; 27.3 1.3E+02 0.0029 25.8 5.2 46 150-195 124-172 (174)
124 cd06551 LPLAT Lysophospholipid 27.2 3.6E+02 0.0078 22.7 8.0 49 105-167 91-140 (187)
125 PF14488 DUF4434: Domain of un 26.8 2.5E+02 0.0055 24.1 6.7 67 100-168 19-85 (166)
126 cd07574 nitrilase_Rim1_like Un 26.7 2.3E+02 0.0049 26.1 7.0 64 108-187 163-231 (280)
127 PRK10528 multifunctional acyl- 26.6 1.9E+02 0.0042 25.0 6.1 69 84-165 73-146 (191)
128 cd03017 PRX_BCP Peroxiredoxin 26.4 2.6E+02 0.0057 22.3 6.6 16 180-195 112-127 (140)
129 PF13342 Toprim_Crpt: C-termin 26.1 1.4E+02 0.0031 21.2 4.2 40 150-191 18-57 (62)
130 cd01828 sialate_O-acetylestera 25.7 3.9E+02 0.0084 22.1 7.7 72 84-165 50-128 (169)
131 CHL00200 trpA tryptophan synth 25.6 1.6E+02 0.0034 27.5 5.6 30 234-263 205-234 (263)
132 PF02126 PTE: Phosphotriestera 25.5 1.6E+02 0.0036 28.1 5.8 53 96-168 33-85 (308)
133 cd03297 ABC_ModC_molybdenum_tr 25.4 2.6E+02 0.0056 24.5 6.9 70 107-191 142-211 (214)
134 cd03018 PRX_AhpE_like Peroxire 25.2 2.8E+02 0.006 22.5 6.6 28 94-121 42-69 (149)
135 TIGR00486 YbgI_SA1388 dinuclea 24.5 2.5E+02 0.0054 25.8 6.6 56 233-290 38-97 (249)
136 PLN02901 1-acyl-sn-glycerol-3- 24.2 2.4E+02 0.0052 25.0 6.4 55 97-167 106-160 (214)
137 PRK10799 metal-binding protein 23.9 2.8E+02 0.006 25.5 6.8 57 233-290 37-96 (247)
138 TIGR01917 gly_red_sel_B glycin 23.0 2.5E+02 0.0055 28.1 6.5 64 228-291 43-114 (431)
139 cd07992 LPLAT_AAK14816-like Ly 22.9 1.1E+02 0.0024 26.8 3.9 26 101-126 97-122 (203)
140 TIGR01918 various_sel_PB selen 22.8 2.5E+02 0.0054 28.2 6.5 64 228-291 43-114 (431)
141 COG1504 Uncharacterized conser 22.3 2.6E+02 0.0056 22.6 5.2 83 172-262 13-98 (121)
142 PF05221 AdoHcyase: S-adenosyl 22.3 2.5E+02 0.0055 26.3 6.1 58 227-290 41-98 (268)
143 cd03265 ABC_DrrA DrrA is the A 21.8 3.3E+02 0.0072 24.0 6.8 71 107-192 142-212 (220)
144 TIGR02314 ABC_MetN D-methionin 21.8 2.9E+02 0.0062 26.8 6.8 72 106-192 150-221 (343)
145 PF01081 Aldolase: KDPG and KH 21.8 1.7E+02 0.0036 26.1 4.7 37 106-168 72-108 (196)
146 PF10087 DUF2325: Uncharacteri 21.6 3.7E+02 0.008 20.5 7.2 53 237-293 30-84 (97)
147 KOG1274 WD40 repeat protein [G 20.9 46 0.00099 36.1 1.1 61 33-93 649-712 (933)
148 cd00984 DnaB_C DnaB helicase C 20.9 2.9E+02 0.0062 24.7 6.3 61 101-168 109-170 (242)
149 cd03298 ABC_ThiQ_thiamine_tran 20.8 3.8E+02 0.0083 23.3 7.0 70 107-191 139-208 (211)
150 COG2100 Predicted Fe-S oxidore 20.8 1.9E+02 0.0041 28.1 5.0 47 97-161 238-284 (414)
151 cd03256 ABC_PhnC_transporter A 20.8 3.6E+02 0.0077 24.0 6.9 70 107-191 155-224 (241)
152 PTZ00314 inosine-5'-monophosph 20.8 6.5E+02 0.014 25.8 9.4 58 230-289 230-287 (495)
153 cd01832 SGNH_hydrolase_like_1 20.7 3.9E+02 0.0085 22.3 6.9 63 95-165 86-149 (185)
154 TIGR00262 trpA tryptophan synt 20.4 2.5E+02 0.0054 26.0 5.8 30 234-263 201-230 (256)
155 COG1121 ZnuC ABC-type Mn/Zn tr 20.1 3.2E+02 0.0069 25.4 6.3 65 106-185 149-213 (254)
No 1
>cd07587 ML_beta-AS mammalian-like beta-alanine synthase (beta-AS) and similar proteins (class 5 nitrilases). This subgroup includes mammalian-like beta-AS (EC 3.5.1.6, also known as beta-ureidopropionase or N-carbamoyl-beta-alanine amidohydrolase). This enzyme catalyzes the third and final step in the catabolic pyrimidine catabolic pathway responsible for the degradation of uracil and thymine, the hydrolysis of N-carbamyl-beta-alanine and N-carbamyl-beta-aminoisobutyrate to the beta-amino acids, beta-alanine and beta-aminoisobutyrate respectively. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 5. Members of this superfamily generally form homomeric
Probab=100.00 E-value=6.2e-52 Score=402.47 Aligned_cols=275 Identities=25% Similarity=0.407 Sum_probs=237.1
Q ss_pred CCCCCCCCCCCceEEEEEecccc--------cCHHHHHHHHHHHHHHHHHCCCcEEEcCCCCCCCCCCCCc-----cchh
Q 017888 71 PALPLPTPPVAKFKVGLCQLSVT--------ADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSF-----PVYA 137 (364)
Q Consensus 71 ~~~~~~~~~~~~~kIA~vQ~~v~--------~d~~~n~~~i~~~i~~A~~~gadLvVfPE~~l~gy~~~~~-----~~~~ 137 (364)
++.++.+...+.||||++|+++. +|+++|++++.+++++|+++|+|||||||++++||.+... ..++
T Consensus 52 ~~~~~~~~~~~~~rIAlvQ~~~~~~~~~p~~~d~~~nl~ki~~~i~~Aa~~gadLivfPE~~l~g~~~~~~~~~~~~~~a 131 (363)
T cd07587 52 EAAPEQTRPPRIVRVGLIQNKIVLPTTAPIAEQREAIHDRIKKIIEAAAMAGVNIICFQEAWTMPFAFCTREKLPWCEFA 131 (363)
T ss_pred CCChhhcCCCceEEEEEEeccccccccCccccCHHHHHHHHHHHHHHHHHcCCCEEEccccccCCccccccccchHHHHh
Confidence 44556666666799999998753 4899999999999999999999999999999999864321 2233
Q ss_pred hhhccCCCCchHHHHHHHHHHHcCcEEEEeeeeeec---CCeeEEEEEEEcCCCcEEEEeeccccCCCCCCCcccccccc
Q 017888 138 EDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERS---GDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESK 214 (364)
Q Consensus 138 ~~~~~~~~~~~~~~~l~~lA~~~~i~Iv~Gs~~~~~---~~~~yNsa~vi~~~G~i~~~y~K~~L~~~~~P~~~~~~E~~ 214 (364)
+.. ..++.++.++++|++++|+|++| +.+++ ++++||++++|+++|+++++|+|+||+.. ..|.|+.
T Consensus 132 e~~----~~g~~~~~l~~lAk~~~i~Iv~g-i~e~~~~~~~~~yNta~vi~~~G~ilg~yrK~hL~~~-----~~~~E~~ 201 (363)
T cd07587 132 ESA----EDGPTTKFCQELAKKYNMVIVSP-ILERDEEHGDTIWNTAVVISNSGNVLGKSRKNHIPRV-----GDFNEST 201 (363)
T ss_pred hcc----CCChHHHHHHHHHHHcCcEEEEe-eeeeecCCCCcEEEEEEEECCCCCEEeeeeeEecCCC-----CCcccee
Confidence 322 13679999999999999999988 56665 36899999999999999999999999653 2568999
Q ss_pred cccCCCC-CeEEecCCeeEEEEEeccCcccHHHHHHHhCCceEEEEeCCCCCCCChhHHHHHHHHHHHhcCcEEEEecCC
Q 017888 215 SLTAGET-PTIVDTDVGRIGIGICYDIRFQELAMIYGARGAHLICYPGAFNMTTGPLHWELLQRARATDNQLYVATCSPA 293 (364)
Q Consensus 215 ~~~~G~~-~~vf~~~~~rigv~IC~D~~fpe~~r~~~~~Gadlil~ps~~~~~~~~~~~~~~~~~rA~en~~~vv~~n~~ 293 (364)
+|.+|+. +.+|+++++|||++||||.+|||++|.++++|||+|++|++|+......+|..++++||+||++||+.+|.+
T Consensus 202 ~f~~G~~~~~vf~t~~griG~~ICyD~~fPe~~r~la~~GAdiil~Psa~~~~~~~~~w~~~~rarAieN~~fVv~~Nrv 281 (363)
T cd07587 202 YYMEGNTGHPVFETQFGKIAVNICYGRHHPLNWLMYGLNGAEIVFNPSATVGALSEPMWPIEARNAAIANSYFTVGINRV 281 (363)
T ss_pred EEecCCCCCceEEcCCceEEEEEecccCCcHHHHHHHHcCCcEEEECCCcCCCCchHHHHHHHHHHHHhcCcEEEEeccc
Confidence 9999985 789999999999999999999999999999999999999999765555789999999999999999999998
Q ss_pred CCCC---------------CCeeeeeEeEEECCCCCEeEeCC-CCCcEEEEEEchhhHHHHHhcCCCccccccccchh
Q 017888 294 RDEG---------------AGYVAWGHSTLVGPFGEVLATTE-HAEDIIIAEIDYSILELRRTSLPLSKQRRGDLYQL 355 (364)
Q Consensus 294 g~~~---------------~~~~~~G~S~Ii~p~G~il~~~~-~~e~vl~~~ldl~~~~~~r~~~~~~~~~r~~ly~~ 355 (364)
|... +...|+|+|+|++|+|++++.+. .+|+++++++|++.+++.|.++|++.+|||++|+.
T Consensus 282 G~e~~~~~~~~~~g~~~~~~~~~f~G~S~Ii~P~G~il~~~~~~~E~ll~adiDl~~i~~~R~~~~~~~~~r~~~y~~ 359 (363)
T cd07587 282 GTEVFPNEFTSGDGKPAHKDFGHFYGSSYVAAPDGSRTPGLSRTRDGLLVAELDLNLCRQVKDKWGFRMTARYEMYAD 359 (363)
T ss_pred cccccccccccccccccccccccccceeEEECCCCCCccCCCCCCCcEEEEEecHHHHHHHHhcCCCCccCCHHHHHH
Confidence 8531 12468999999999999998875 78999999999999999999999999999999964
No 2
>TIGR03381 agmatine_aguB N-carbamoylputrescine amidase. Members of this family are N-carbamoylputrescine amidase (3.5.1.53). Bacterial genes are designated AguB. The AguAB pathway replaces SpeB for conversion of agmatine to putrescine in two steps rather than one.
Probab=100.00 E-value=3.3e-51 Score=385.34 Aligned_cols=266 Identities=29% Similarity=0.469 Sum_probs=230.3
Q ss_pred eEEEEEecccccCHHHHHHHHHHHHHHHHHCCCcEEEcCCCCCCCCCCCCccc-hhhhhccCCCCchHHHHHHHHHHHcC
Q 017888 83 FKVGLCQLSVTADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPV-YAEDIDAGGDASPSTAMLSEVARLLK 161 (364)
Q Consensus 83 ~kIA~vQ~~v~~d~~~n~~~i~~~i~~A~~~gadLvVfPE~~l~gy~~~~~~~-~~~~~~~~~~~~~~~~~l~~lA~~~~ 161 (364)
||||++|+++.+|+++|++++.+++++|+++|+|||||||++++||...+... +.+. ......++.++.++++|++++
T Consensus 1 ~~ia~~Q~~~~~d~~~Nl~~~~~~i~~A~~~gadlivfPE~~~~gy~~~~~~~~~~~~-a~~~~~~~~~~~l~~~a~~~~ 79 (279)
T TIGR03381 1 VTVAALQMACSDDVETNIARAERLVREAAARGAQIILLPELFEGPYFCKDQDEDYFAL-AQPVEGHPAIKRFQALAKELG 79 (279)
T ss_pred CEEEEEEeeccCCHHHHHHHHHHHHHHHHHCCCCEEEcccccCCCCcCCccccchHhh-cCcCCCChHHHHHHHHHHHcC
Confidence 69999999987999999999999999999999999999999999997543211 1111 000112468899999999999
Q ss_pred cEEEEeeeeeecCCeeEEEEEEEcCCCcEEEEeeccccCCCCCCCcccccccccccCCC-CCeEEecCCeeEEEEEeccC
Q 017888 162 ITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGE-TPTIVDTDVGRIGIGICYDI 240 (364)
Q Consensus 162 i~Iv~Gs~~~~~~~~~yNsa~vi~~~G~i~~~y~K~~L~~~~~P~~~~~~E~~~~~~G~-~~~vf~~~~~rigv~IC~D~ 240 (364)
++|++| +++++++++||++++|+++|+++++|+|+||+. ...+.|..+|++|+ .+.+|+++++|+|++||||.
T Consensus 80 i~i~~g-~~~~~~~~~yNs~~~i~~~G~i~~~y~K~hL~~-----~~~~~E~~~f~~G~~~~~~f~~~~~~ig~~IC~D~ 153 (279)
T TIGR03381 80 VVIPVS-FFEKAGNAYYNSLAMIDADGSVLGVYRKSHIPD-----GPGYQEKFYFRPGDTGFKVWDTRYGRIGVGICWDQ 153 (279)
T ss_pred cEEEEe-eeecCCCceEEeEEEECCCCCEEEEEEeeecCC-----CCCcccceeEccCCCCCceEecCCceEEEEEEcCC
Confidence 999999 677777899999999999999999999999953 22456888999998 48999999999999999999
Q ss_pred cccHHHHHHHhCCceEEEEeCCCCCC------CChhHHHHHHHHHHHhcCcEEEEecCCCCC---CCCeeeeeEeEEECC
Q 017888 241 RFQELAMIYGARGAHLICYPGAFNMT------TGPLHWELLQRARATDNQLYVATCSPARDE---GAGYVAWGHSTLVGP 311 (364)
Q Consensus 241 ~fpe~~r~~~~~Gadlil~ps~~~~~------~~~~~~~~~~~~rA~en~~~vv~~n~~g~~---~~~~~~~G~S~Ii~p 311 (364)
+|||++|.++++|||+|++|++|... ....+|..+.++||+||++|++++|+.|.. +.+..|+|.|+|++|
T Consensus 154 ~fpe~~r~~a~~ga~lil~ps~~~~~~~~~~~~~~~~~~~~~~~rA~en~~~vv~an~~G~~~~~~~~~~~~G~S~i~~p 233 (279)
T TIGR03381 154 WFPETARAMALMGAEVLFYPTAIGSEPHDPDLDSRDHWQRVMQGHAAANLVPVVAANRIGTEVGDGGEQTFYGSSFIADH 233 (279)
T ss_pred cChHHHHHHHHcCCCEEEecCccCCCCcccccccHHHHHHHHHHHHHhCCCeEEEEecccccCCCCCcceEeeeEEEECC
Confidence 99999999999999999999997542 234578888999999999999999998865 256789999999999
Q ss_pred CCCEeEeCC-CCCcEEEEEEchhhHHHHHhcCCCccccccccchh
Q 017888 312 FGEVLATTE-HAEDIIIAEIDYSILELRRTSLPLSKQRRGDLYQL 355 (364)
Q Consensus 312 ~G~il~~~~-~~e~vl~~~ldl~~~~~~r~~~~~~~~~r~~ly~~ 355 (364)
+|+++++++ ++++++++++|++.++.+|..++++++|||++|+.
T Consensus 234 ~G~il~~~~~~~e~~~~~~id~~~~~~~r~~~~~~~~~r~~~y~~ 278 (279)
T TIGR03381 234 TGELVAEAGRSEEAVLVATFDLDEIAKQRAAWGFFRDRRPELYGP 278 (279)
T ss_pred CCcEeecCCCCCCceEEEEeCHHHHHHHHhcCchhhhCChhhccC
Confidence 999999986 68999999999999999999999999999999963
No 3
>PLN02798 nitrilase
Probab=100.00 E-value=2.2e-50 Score=381.47 Aligned_cols=270 Identities=34% Similarity=0.556 Sum_probs=238.0
Q ss_pred CCCceEEEEEecccccCHHHHHHHHHHHHHHHHHCCCcEEEcCCC-CCCCCCCCCccchhhhhccCCCCchHHHHHHHHH
Q 017888 79 PVAKFKVGLCQLSVTADKERNIAHARRAIEEAAEKGAKLILLPEI-WNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVA 157 (364)
Q Consensus 79 ~~~~~kIA~vQ~~v~~d~~~n~~~i~~~i~~A~~~gadLvVfPE~-~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~lA 157 (364)
+.++||||++|+++.+|++.|++++++++++|+++|+|||||||+ .++||...+...+.+.+ .++..+.++++|
T Consensus 7 ~~~~~ria~~Q~~~~~d~~~N~~~~~~~i~~A~~~gadlvvfPE~~~~~g~~~~~~~~~~~~~-----~~~~~~~l~~~A 81 (286)
T PLN02798 7 AGSSVRVAVAQMTSTNDLAANFATCSRLAKEAAAAGAKLLFLPECFSFIGDKDGESLAIAEPL-----DGPIMQRYRSLA 81 (286)
T ss_pred ccCccEEEEEEccCCCCHHHHHHHHHHHHHHHHHCCCCEEEcCCCccccCcCchhhhhhcccC-----CCHHHHHHHHHH
Confidence 345699999999977999999999999999999999999999998 45777644332222221 246899999999
Q ss_pred HHcCcEEEEeeeeee--cCCeeEEEEEEEcCCCcEEEEeeccccCCCCCCCcccccccccccCCCCCeEEecCCeeEEEE
Q 017888 158 RLLKITIVGGSIPER--SGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETPTIVDTDVGRIGIG 235 (364)
Q Consensus 158 ~~~~i~Iv~Gs~~~~--~~~~~yNsa~vi~~~G~i~~~y~K~~L~~~~~P~~~~~~E~~~~~~G~~~~vf~~~~~rigv~ 235 (364)
++++++|++|.++++ +++++||++++|+++|+++++|+|+||++.++|....+.|..+|.+|+.+.+|+++++|+|++
T Consensus 82 ~~~~i~iv~G~~~~~~~~~~~~yNs~~vi~~~G~i~~~y~K~~L~~~~~p~~~~~~e~~~~~~G~~~~v~~~~~~k~g~~ 161 (286)
T PLN02798 82 RESGLWLSLGGFQEKGPDDSHLYNTHVLIDDSGEIRSSYRKIHLFDVDVPGGPVLKESSFTAPGKTIVAVDSPVGRLGLT 161 (286)
T ss_pred HHcCeEEEEeeeEcccCCCCceEEEEEEECCCCCEEEEEEEEEeccccCCCCCcccccccccCCCeeeEEecCCceEEEE
Confidence 999999998866655 467899999999999999999999999876667666667888999999999999999999999
Q ss_pred EeccCcccHHHHHHH-hCCceEEEEeCCCCCCCChhHHHHHHHHHHHhcCcEEEEecCCCCCCCCeeeeeEeEEECCCCC
Q 017888 236 ICYDIRFQELAMIYG-ARGAHLICYPGAFNMTTGPLHWELLQRARATDNQLYVATCSPARDEGAGYVAWGHSTLVGPFGE 314 (364)
Q Consensus 236 IC~D~~fpe~~r~~~-~~Gadlil~ps~~~~~~~~~~~~~~~~~rA~en~~~vv~~n~~g~~~~~~~~~G~S~Ii~p~G~ 314 (364)
||||.+||+++|.++ ++|||+|++|++|+...+..+|..+.++||+||++||+.+|+.|..+.+..++|.|+|++|+|+
T Consensus 162 IC~D~~fpe~~r~~a~~~Gadlil~ps~~~~~~~~~~~~~~~~~rAien~~~vv~an~~G~~~~~~~~~G~S~ii~p~G~ 241 (286)
T PLN02798 162 VCYDLRFPELYQQLRFEHGAQVLLVPSAFTKPTGEAHWEVLLRARAIETQCYVIAAAQAGKHNEKRESYGHALIIDPWGT 241 (286)
T ss_pred EEEcccChHHHHHHHHhCCCcEEEECCcCCCCCcHHHHHHHHHHHHHHhCCEEEEecccCcCCCCceeeeeeEEECCCcc
Confidence 999999999999998 9999999999998876666789999999999999999999999876667889999999999999
Q ss_pred EeEeCC--CCCcEEEEEEchhhHHHHHhcCCCccccccccc
Q 017888 315 VLATTE--HAEDIIIAEIDYSILELRRTSLPLSKQRRGDLY 353 (364)
Q Consensus 315 il~~~~--~~e~vl~~~ldl~~~~~~r~~~~~~~~~r~~ly 353 (364)
++++++ ++++++++++|++.++..|..+|++.++||++|
T Consensus 242 il~~~~~~~~e~~~~a~id~~~~~~~r~~~~~~~~~~~~~~ 282 (286)
T PLN02798 242 VVARLPDRLSTGIAVADIDLSLLDSVRTKMPIAEHRRSLEF 282 (286)
T ss_pred chhhcCCCCCCCEEEEEecHHHHHHHHHhCcchhccchhhh
Confidence 998885 478999999999999999999999999999886
No 4
>PRK10438 C-N hydrolase family amidase; Provisional
Probab=100.00 E-value=4.7e-50 Score=373.34 Aligned_cols=251 Identities=27% Similarity=0.402 Sum_probs=218.4
Q ss_pred ceEEEEEecccc-cCHHHHHHHHHHHHHHHHHCCCcEEEcCCCCCCCCCCCCccchhhhhccCCCCchHHHHHHHHHHHc
Q 017888 82 KFKVGLCQLSVT-ADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLL 160 (364)
Q Consensus 82 ~~kIA~vQ~~v~-~d~~~n~~~i~~~i~~A~~~gadLvVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~~ 160 (364)
+||||++|+++. +|++.|++++.+++++| +|+|||||||++++||...+.. +.+. .+++.+.++++|+++
T Consensus 3 ~mkia~~Q~~~~~~d~~~Nl~~~~~~i~~a--~gadLivfPE~~~~Gy~~~~~~---~~~~----~~~~~~~l~~~A~~~ 73 (256)
T PRK10438 3 GLKITLLQQPLVWMDGPANLRHFDRQLEGI--TGRDVIVLPEMFTTGFAMEAAA---SSLP----QDDVVAWMTAKAQQT 73 (256)
T ss_pred CCEEEEEEecCccCCHHHHHHHHHHHHHhc--cCCCEEEeCCcccCCCcccchh---hccc----cchHHHHHHHHHHHc
Confidence 499999999976 89999999999999875 7999999999999999764321 1111 235788999999999
Q ss_pred CcEEEEeeeeeecCCeeEEEEEEEcCCCcEEEEeeccccCCCCCCCcccccccccccCCCCCeEEecCCeeEEEEEeccC
Q 017888 161 KITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETPTIVDTDVGRIGIGICYDI 240 (364)
Q Consensus 161 ~i~Iv~Gs~~~~~~~~~yNsa~vi~~~G~i~~~y~K~~L~~~~~P~~~~~~E~~~~~~G~~~~vf~~~~~rigv~IC~D~ 240 (364)
++.| +|++.+..++++||++++|+++|. +..|+|+||+++ +.|..+|++|+++.+|+++++|+|++||||.
T Consensus 74 ~~~i-~g~~~~~~~~~~~Nsa~vi~~~G~-~~~y~K~hL~~~-------~~E~~~f~~G~~~~v~~~~~~~iG~~ICyD~ 144 (256)
T PRK10438 74 NALI-AGSVALQTESGAVNRFLLVEPGGT-VHFYDKRHLFRM-------ADEHLHYKAGNARVIVEWRGWRILPLVCYDL 144 (256)
T ss_pred CeEE-EEEEEEecCCCeEEEEEEEcCCCC-EEEEeeeecCCC-------CCccceecCCCCceEEEECCEEEEEEEEeec
Confidence 9755 564555556789999999999997 579999999763 3688899999999999999999999999999
Q ss_pred cccHHHHHHHhCCceEEEEeCCCCCCCChhHHHHHHHHHHHhcCcEEEEecCCCCCCCCeeeeeEeEEECCCCCEeEeCC
Q 017888 241 RFQELAMIYGARGAHLICYPGAFNMTTGPLHWELLQRARATDNQLYVATCSPARDEGAGYVAWGHSTLVGPFGEVLATTE 320 (364)
Q Consensus 241 ~fpe~~r~~~~~Gadlil~ps~~~~~~~~~~~~~~~~~rA~en~~~vv~~n~~g~~~~~~~~~G~S~Ii~p~G~il~~~~ 320 (364)
+|||++|.+ +|+|++++|++|+.. ...+|+.+.++||+||++||++||.+|..+++..|+|+|+|++|+|+++++++
T Consensus 145 ~fPe~~r~l--~gad~i~~~s~~~~~-~~~~~~~~~~aRA~En~~~vv~~n~~G~~~~~~~~~G~S~ivdP~G~vl~~~~ 221 (256)
T PRK10438 145 RFPVWSRNR--NDYDLALYVANWPAP-RSLHWQTLLTARAIENQAYVAGCNRVGSDGNGHHYRGDSRIINPQGEIIATAE 221 (256)
T ss_pred CCHHHHHhh--cCCCEEEEecCCCCC-chHHHHHHHHHHHHhcCcEEEEecccccCCCCCEEcCceEEECCCCcEEEEcC
Confidence 999999986 789999999998764 34589999999999999999999999877667889999999999999999985
Q ss_pred -CCCcEEEEEEchhhHHHHHhcCCCccccccccc
Q 017888 321 -HAEDIIIAEIDYSILELRRTSLPLSKQRRGDLY 353 (364)
Q Consensus 321 -~~e~vl~~~ldl~~~~~~r~~~~~~~~~r~~ly 353 (364)
++++++++++|++.++..|..+|++++|++..|
T Consensus 222 ~~~e~~i~~~idl~~~~~~R~~~~~l~~r~~~~~ 255 (256)
T PRK10438 222 PHQATRIDAELSLEALQEYREKFPAWRDADEFTL 255 (256)
T ss_pred CCCcEEEEEEECHHHHHHHHHhCCccccCChhhc
Confidence 689999999999999999999999999987665
No 5
>cd07568 ML_beta-AS_like mammalian-like beta-alanine synthase (beta-AS) and similar proteins (class 5 nitrilases). This family includes mammalian-like beta-AS (EC 3.5.1.6, also known as beta-ureidopropionase or N-carbamoyl-beta-alanine amidohydrolase). This enzyme catalyzes the third and final step in the catabolic pyrimidine catabolic pathway responsible for the degradation of uracil and thymine, the hydrolysis of N-carbamyl-beta-alanine and N-carbamyl-beta-aminoisobutyrate to the beta-amino acids, beta-alanine and beta-aminoisobutyrate respectively. This family belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 5. Members of this superfamily generally form homomeric
Probab=100.00 E-value=6.6e-50 Score=378.23 Aligned_cols=266 Identities=30% Similarity=0.467 Sum_probs=230.2
Q ss_pred CceEEEEEecccc--------cCHHHHHHHHHHHHHHHHHCCCcEEEcCCCCCCCCCCCCcc----chhhhhccCCCCch
Q 017888 81 AKFKVGLCQLSVT--------ADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFP----VYAEDIDAGGDASP 148 (364)
Q Consensus 81 ~~~kIA~vQ~~v~--------~d~~~n~~~i~~~i~~A~~~gadLvVfPE~~l~gy~~~~~~----~~~~~~~~~~~~~~ 148 (364)
++||||++|+++. ++.++|++++.+++++|+++|||||||||++++||...+.. +.++.. ..++
T Consensus 2 ~~~rva~vQ~~~~~~~~~~~~~~~~~nl~~~~~~i~~A~~~gadlvvfPE~~~~g~~~~~~~~~~~~~~~~~----~~~~ 77 (287)
T cd07568 2 RIVRVGLIQASNVIPTDAPIEKQKEAMIQKHVTMIREAAEAGAQIVCLQEIFYGPYFCAEQDTKWYEFAEEI----PNGP 77 (287)
T ss_pred ceEEEEEEEeecccccccccccCHHHHHHHHHHHHHHHHHcCCcEEEcccccCCCCCccccccchhhhcccC----CCCh
Confidence 4599999999865 78899999999999999999999999999999998643311 111111 1356
Q ss_pred HHHHHHHHHHHcCcEEEEeeeeeec-CCeeEEEEEEEcCCCcEEEEeeccccCCCCCCCcccccccccccCCC-CCeEEe
Q 017888 149 STAMLSEVARLLKITIVGGSIPERS-GDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGE-TPTIVD 226 (364)
Q Consensus 149 ~~~~l~~lA~~~~i~Iv~Gs~~~~~-~~~~yNsa~vi~~~G~i~~~y~K~~L~~~~~P~~~~~~E~~~~~~G~-~~~vf~ 226 (364)
.++.|+++|++++++|++| +.+++ ++++||++++|+|+|+++++|+|+||++++ .+.|..+|.+|+ ...+|+
T Consensus 78 ~~~~l~~~a~~~~i~ii~g-~~~~~~~~~~yNs~~~i~~~G~i~~~y~K~hL~~~~-----~~~e~~~f~~G~~~~~~f~ 151 (287)
T cd07568 78 TTKRFAALAKEYNMVLILP-IYEKEQGGTLYNTAAVIDADGTYLGKYRKNHIPHVG-----GFWEKFYFRPGNLGYPVFD 151 (287)
T ss_pred HHHHHHHHHHHCCEEEEEE-eEEEcCCCcEEEEEEEECCCCcEeeEEeeeecCCCC-----ccceeeeecCCCCCCceEE
Confidence 8999999999999999998 45543 578999999999999999999999997643 467888999998 589999
Q ss_pred cCCeeEEEEEeccCcccHHHHHHHhCCceEEEEeCCCCCCCChhHHHHHHHHHHHhcCcEEEEecCCCCCCC--Ceeeee
Q 017888 227 TDVGRIGIGICYDIRFQELAMIYGARGAHLICYPGAFNMTTGPLHWELLQRARATDNQLYVATCSPARDEGA--GYVAWG 304 (364)
Q Consensus 227 ~~~~rigv~IC~D~~fpe~~r~~~~~Gadlil~ps~~~~~~~~~~~~~~~~~rA~en~~~vv~~n~~g~~~~--~~~~~G 304 (364)
++++|+|++||||.+||+++|.++++|||+|++|+++.......+|....++||+||++|++.+|..|.... ...+.|
T Consensus 152 ~~~~~iG~~ICyD~~fpe~~r~la~~Ga~li~~ps~~~~~~~~~~~~~~~~~rA~en~~~vv~~N~~G~~~~~~~~~~~G 231 (287)
T cd07568 152 TAFGKIGVYICYDRHFPEGWRALGLNGAEIVFNPSATVAGLSEYLWKLEQPAAAVANGYFVGAINRVGTEAPWNIGEFYG 231 (287)
T ss_pred cCCceEEEEEEecccCchHHHHHHHCCCeEEEECCcCCCCCchhhhHHHHHHHHHHCCcEEEEeccccccCCCccceEec
Confidence 999999999999999999999999999999999999875444567888889999999999999998875432 257899
Q ss_pred EeEEECCCCCEeEeCC-CCCcEEEEEEchhhHHHHHhcCCCccccccccchhh
Q 017888 305 HSTLVGPFGEVLATTE-HAEDIIIAEIDYSILELRRTSLPLSKQRRGDLYQLV 356 (364)
Q Consensus 305 ~S~Ii~p~G~il~~~~-~~e~vl~~~ldl~~~~~~r~~~~~~~~~r~~ly~~~ 356 (364)
.|+|++|+|+++++++ ++++++++++|++.++.+|..+|++++|||++|+.+
T Consensus 232 ~S~ii~p~G~il~~~~~~~~~~l~a~id~~~~~~~R~~~~~~~~~r~~~y~~~ 284 (287)
T cd07568 232 SSYFVDPRGQFVASASRDKDELLVAELDLDLIREVRDTWQFYRDRRPETYGEL 284 (287)
T ss_pred eeEEECCCceEEEecCCCCCeEEEEEecHHHHHHHHhhCchhhhcCHHHhHHh
Confidence 9999999999999986 789999999999999999999999999999999754
No 6
>PLN00202 beta-ureidopropionase
Probab=100.00 E-value=3.6e-50 Score=394.16 Aligned_cols=267 Identities=26% Similarity=0.437 Sum_probs=232.9
Q ss_pred CCceEEEEEecccc--------cCHHHHHHHHHHHHHHHHHCCCcEEEcCCCCCCCCCCC----CccchhhhhccCCCCc
Q 017888 80 VAKFKVGLCQLSVT--------ADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHD----SFPVYAEDIDAGGDAS 147 (364)
Q Consensus 80 ~~~~kIA~vQ~~v~--------~d~~~n~~~i~~~i~~A~~~gadLvVfPE~~l~gy~~~----~~~~~~~~~~~~~~~~ 147 (364)
.+.||||++|+++. .++++|++++.+++++|+++|||||||||++++||... .+.++++.+ .+
T Consensus 84 ~~~~rValiQ~~i~~~~~~~~~~~~~~nl~~~~~li~~Aa~~gadLVvfPE~~~~g~~~~~~~~~~~~~ae~~-----~g 158 (405)
T PLN00202 84 PRVVRVGLIQNSIALPTTAPFADQKRAIMDKVKPMIDAAGAAGVNILCLQEAWTMPFAFCTREKRWCEFAEPV-----DG 158 (405)
T ss_pred CCeEEEEEEecccccCCCCcccCCHHHHHHHHHHHHHHHHHCCCCEEEecchhccccccccccchHHHHhhhC-----CC
Confidence 45599999999863 48999999999999999999999999999999998542 122333332 25
Q ss_pred hHHHHHHHHHHHcCcEEEEeeeeeec---CCeeEEEEEEEcCCCcEEEEeeccccCCCCCCCcccccccccccCCCC-Ce
Q 017888 148 PSTAMLSEVARLLKITIVGGSIPERS---GDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGET-PT 223 (364)
Q Consensus 148 ~~~~~l~~lA~~~~i~Iv~Gs~~~~~---~~~~yNsa~vi~~~G~i~~~y~K~~L~~~~~P~~~~~~E~~~~~~G~~-~~ 223 (364)
+..+.++++|++++++|++| +.+++ ++++||++++|+++|+++++|+|+||++++ .|.|+.+|.+|+. ..
T Consensus 159 ~~~~~l~~lA~~~~i~Iv~G-~~e~~~~~~~~~yNSa~vI~~~G~iig~YrKiHL~~~g-----~~~E~~~f~~G~~g~~ 232 (405)
T PLN00202 159 ESTKFLQELARKYNMVIVSP-ILERDVNHGETLWNTAVVIGNNGNIIGKHRKNHIPRVG-----DFNESTYYMEGNTGHP 232 (405)
T ss_pred HHHHHHHHHHHHCCeEEEEE-eeeeecCCCCcEEEEEEEECCCCcEEEEEecccCCCCC-----CccccceeecCCCCce
Confidence 78999999999999999999 55653 357999999999999999999999998753 5678899999986 68
Q ss_pred EEecCCeeEEEEEeccCcccHHHHHHHhCCceEEEEeCCCCCCCChhHHHHHHHHHHHhcCcEEEEecCCCCCC------
Q 017888 224 IVDTDVGRIGIGICYDIRFQELAMIYGARGAHLICYPGAFNMTTGPLHWELLQRARATDNQLYVATCSPARDEG------ 297 (364)
Q Consensus 224 vf~~~~~rigv~IC~D~~fpe~~r~~~~~Gadlil~ps~~~~~~~~~~~~~~~~~rA~en~~~vv~~n~~g~~~------ 297 (364)
+|+++++|||++||||.+|||++|.++.+|||+|++|++|.......+|..++++||+||++||+++|.+|...
T Consensus 233 vf~t~~gkiGv~ICYD~~FPE~~r~la~~GAdiIl~Psa~~~~~~~~~w~~~~raRAiEN~~fvv~aNrvG~~~~~~~~~ 312 (405)
T PLN00202 233 VFETAFGKIAVNICYGRHHPLNWLAFGLNGAEIVFNPSATVGDLSEPMWPIEARNAAIANSYFVGSINRVGTEVFPNPFT 312 (405)
T ss_pred EEEeCCCeEEEEEccccccHHHHHHHHHCCCcEEEECCCCCCccCHHHHHHHHHHHHHhcCCEEEEeccccccccccccc
Confidence 99999999999999999999999999999999999999987655557899999999999999999999998632
Q ss_pred --CC-------eeeeeEeEEECCCCCEeEeCC-CCCcEEEEEEchhhHHHHHhcCCCccccccccchhhh
Q 017888 298 --AG-------YVAWGHSTLVGPFGEVLATTE-HAEDIIIAEIDYSILELRRTSLPLSKQRRGDLYQLVD 357 (364)
Q Consensus 298 --~~-------~~~~G~S~Ii~p~G~il~~~~-~~e~vl~~~ldl~~~~~~r~~~~~~~~~r~~ly~~~~ 357 (364)
++ ..|+|+|+|++|+|++++.+. .+|+++++++|++.++++|.++|++++||+++|+..-
T Consensus 313 ~~~g~~~~~~~~~f~G~S~Iv~P~G~vla~~~~~~E~llvadIDl~~v~~~R~~~~~~~~rR~~ly~~~~ 382 (405)
T PLN00202 313 SGDGKPQHKDFGHFYGSSHFSAPDASCTPSLSRYKDGLLISDMDLNLCRQLKDKWGFRMTARYEMYADFF 382 (405)
T ss_pred cccccccccccccccceeEEEcCCCCEeccCCCCCCcEEEEEeCHHHHHHHHHhCCcccccCHhHHHHHH
Confidence 12 568999999999999999886 7899999999999999999999999999999997644
No 7
>cd07572 nit Nit1, Nit 2, and related proteins, and the Nit1-like domain of NitFhit (class 10 nitrilases). This subgroup includes mammalian Nit1 and Nit2, the Nit1-like domain of the invertebrate NitFhit, and various uncharacterized bacterial and archaeal Nit-like proteins. Nit1 and Nit2 are candidate tumor suppressor proteins. In NitFhit, the Nit1-like domain is encoded as a fusion protein with the non-homologous tumor suppressor, fragile histidine triad (Fhit). Mammalian Nit1 and Fhit may affect distinct signal pathways, and both may participate in DNA damage-induced apoptosis. Nit1 is a negative regulator in T cells. Overexpression of Nit2 in HeLa cells leads to a suppression of cell growth through cell cycle arrest in G2. These Nit proteins and the Nit1-like domain of NitFhit belong to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in t
Probab=100.00 E-value=5e-50 Score=374.40 Aligned_cols=263 Identities=50% Similarity=0.827 Sum_probs=235.9
Q ss_pred EEEEEecccccCHHHHHHHHHHHHHHHHHCCCcEEEcCCCCCCCCCCCCccchhhhhccCCCCchHHHHHHHHHHHcCcE
Q 017888 84 KVGLCQLSVTADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKIT 163 (364)
Q Consensus 84 kIA~vQ~~v~~d~~~n~~~i~~~i~~A~~~gadLvVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~~~i~ 163 (364)
|||++|+++.+|+++|++++.+++++|+++|+|||||||++++||...+...... .....++..+.++++|++++++
T Consensus 1 kia~~Q~~~~~d~~~n~~~~~~~i~~A~~~g~dlivfPE~~l~g~~~~~~~~~~~---~~~~~~~~~~~l~~~a~~~~i~ 77 (265)
T cd07572 1 RVALIQMTSTADKEANLARAKELIEEAAAQGAKLVVLPECFNYPGGTDAFKLALA---EEEGDGPTLQALSELAKEHGIW 77 (265)
T ss_pred CEEEEEeeCCCCHHHHHHHHHHHHHHHHHCCCCEEECCccccCcCcchhhhhhhh---ccccCChHHHHHHHHHHHCCeE
Confidence 6999999988999999999999999999999999999999999997654332200 0112356889999999999999
Q ss_pred EEEeeeeeecC--CeeEEEEEEEcCCCcEEEEeeccccCCCCCCCcccccccccccCCCCCeEEecCCeeEEEEEeccCc
Q 017888 164 IVGGSIPERSG--DRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETPTIVDTDVGRIGIGICYDIR 241 (364)
Q Consensus 164 Iv~Gs~~~~~~--~~~yNsa~vi~~~G~i~~~y~K~~L~~~~~P~~~~~~E~~~~~~G~~~~vf~~~~~rigv~IC~D~~ 241 (364)
|++|+++++.+ +++||++++++++|+++.+|+|+||++.++|....|.|..+|++|+...+|+++++|+|++||||.+
T Consensus 78 i~~G~~~~~~~~~~~~yNs~~~i~~~G~i~~~y~K~~l~~~~~p~~~~~~e~~~~~~G~~~~~~~~~~~~ig~~IC~D~~ 157 (265)
T cd07572 78 LVGGSIPERDDDDGKVYNTSLVFDPDGELVARYRKIHLFDVDVPGGISYRESDTLTPGDEVVVVDTPFGKIGLGICYDLR 157 (265)
T ss_pred EEEeeeccccCCCCcEEEEEEEECCCCeEEeEEeeEEeecccCCCCcccccccccCCCCcceEEecCCceEEEEEEeccC
Confidence 99997777665 8999999999999999999999999877778766788999999999999999999999999999999
Q ss_pred ccHHHHHHHhCCceEEEEeCCCCCCCChhHHHHHHHHHHHhcCcEEEEecCCCCCCCCeeeeeEeEEECCCCCEeEeCCC
Q 017888 242 FQELAMIYGARGAHLICYPGAFNMTTGPLHWELLQRARATDNQLYVATCSPARDEGAGYVAWGHSTLVGPFGEVLATTEH 321 (364)
Q Consensus 242 fpe~~r~~~~~Gadlil~ps~~~~~~~~~~~~~~~~~rA~en~~~vv~~n~~g~~~~~~~~~G~S~Ii~p~G~il~~~~~ 321 (364)
||++++.++++|||+|++|++|+...+..+|..+.++||+||++||+++|++|...++..++|.|+|++|+|+++++++.
T Consensus 158 ~pe~~r~~~~~gadli~~p~~~~~~~~~~~~~~~~~~rA~e~~~~vv~~n~~G~~~~~~~~~G~S~i~~p~G~il~~~~~ 237 (265)
T cd07572 158 FPELARALARQGADILTVPAAFTMTTGPAHWELLLRARAIENQCYVVAAAQAGDHEAGRETYGHSMIVDPWGEVLAEAGE 237 (265)
T ss_pred cHHHHHHHHHCCCCEEEECCCCCCCcchHHHHHHHHHHHHhcCCEEEEEcccccCCCCCeecceeEEECCCcHHHhhcCC
Confidence 99999999999999999999988776777899899999999999999999998777778899999999999999999875
Q ss_pred CCcEEEEEEchhhHHHHHhcCCCccccc
Q 017888 322 AEDIIIAEIDYSILELRRTSLPLSKQRR 349 (364)
Q Consensus 322 ~e~vl~~~ldl~~~~~~r~~~~~~~~~r 349 (364)
.++++++++|++.+++.|..+++++|+|
T Consensus 238 ~~~~~~~~id~~~~~~~r~~~~~~~~~~ 265 (265)
T cd07572 238 GEGVVVAEIDLDRLEEVRRQIPVLKHRR 265 (265)
T ss_pred CCcEEEEEeCHHHHHHHHHhCcchhhcC
Confidence 5999999999999999999999999885
No 8
>cd07564 nitrilases_CHs Nitrilases, cyanide hydratase (CH)s, and similar proteins (class 1 nitrilases). Nitrilases (nitrile aminohydrolases, EC:3.5.5.1) hydrolyze nitriles (RCN) to ammonia and the corresponding carboxylic acid. Most nitrilases prefer aromatic nitriles, some prefer arylacetonitriles and others aliphatic nitriles. This group includes the nitrilase cyanide dihydratase (CDH), which hydrolyzes inorganic cyanide (HCN) to produce formate. It also includes cyanide hydratase (CH), which hydrolyzes HCN to formamide. This group includes four Arabidopsis thaliana nitrilases (Ath)NIT1-4. AthNIT1-3 have a strong substrate preference for phenylpropionitrile (PPN) and other nitriles which may originate from the breakdown of glucosinolates. The product of PPN hydrolysis, phenylacetic acid has auxin activity. AthNIT1-3 can also convert indoacetonitrile to indole-3-acetic acid (IAA, auxin), but with a lower affinity and velocity. From their expression patterns, it has been speculated that
Probab=100.00 E-value=1.1e-49 Score=378.53 Aligned_cols=265 Identities=29% Similarity=0.383 Sum_probs=226.8
Q ss_pred eEEEEEecccc-cCHHHHHHHHHHHHHHHHHCCCcEEEcCCCCCCCCCCCCcc--------chhhhhc-cCCCCchHHHH
Q 017888 83 FKVGLCQLSVT-ADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFP--------VYAEDID-AGGDASPSTAM 152 (364)
Q Consensus 83 ~kIA~vQ~~v~-~d~~~n~~~i~~~i~~A~~~gadLvVfPE~~l~gy~~~~~~--------~~~~~~~-~~~~~~~~~~~ 152 (364)
||||++|+++. +|+++|++++.+++++|+++|+|||||||++++||...++. .+....+ .....++.++.
T Consensus 1 ~kia~~Q~~~~~~d~~~nl~~~~~~i~~A~~~ga~lvvfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (297)
T cd07564 1 VKVAAVQAAPVFLDLAATVEKACRLIEEAAANGAQLVVFPEAFIPGYPYWIWFGAPAEGRELFARYYENSVEVDGPELER 80 (297)
T ss_pred CEEEEEecCcccCCHHHHHHHHHHHHHHHHHCCCCEEEeccccccCCCchhhcCCcccchHHHHHHHHhCcCCCCHHHHH
Confidence 69999999865 89999999999999999999999999999999999753321 1111100 01123578999
Q ss_pred HHHHHHHcCcEEEEeeeeeecCCeeEEEEEEEcCCCcEEEEeeccccCCCCCCCcccccccccccCCC--CCeEEecCCe
Q 017888 153 LSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGE--TPTIVDTDVG 230 (364)
Q Consensus 153 l~~lA~~~~i~Iv~Gs~~~~~~~~~yNsa~vi~~~G~i~~~y~K~~L~~~~~P~~~~~~E~~~~~~G~--~~~vf~~~~~ 230 (364)
|+++|++++++|++| +++++++++||++++|+++|+++++|+|+||+ +.|..+|.+|+ ++.+|+++++
T Consensus 81 l~~~a~~~~i~iv~G-~~~~~~~~~yNs~~vi~~~G~i~~~y~K~~l~---------~~E~~~~~~g~~~~~~v~~~~~~ 150 (297)
T cd07564 81 LAEAARENGIYVVLG-VSERDGGTLYNTQLLIDPDGELLGKHRKLKPT---------HAERLVWGQGDGSGLRVVDTPIG 150 (297)
T ss_pred HHHHHHHcCcEEEEe-eEeccCCceEEEEEEEcCCCCEeeeeeccCCC---------chhhhhcccCCCCCceEEecCCc
Confidence 999999999999999 56777789999999999999999999999974 35777888876 5789999999
Q ss_pred eEEEEEeccCcccHHHHHHHhCCceEEEEeCC--CCCCCChhHHHHHHHHHHHhcCcEEEEecCCCCC------------
Q 017888 231 RIGIGICYDIRFQELAMIYGARGAHLICYPGA--FNMTTGPLHWELLQRARATDNQLYVATCSPARDE------------ 296 (364)
Q Consensus 231 rigv~IC~D~~fpe~~r~~~~~Gadlil~ps~--~~~~~~~~~~~~~~~~rA~en~~~vv~~n~~g~~------------ 296 (364)
|+|++||||.+|||+++.++++|||+++++++ |....+..+|+.++++||+||++||+.||.+|..
T Consensus 151 kig~~ICyD~~fPe~~r~~a~~ga~ii~~~~~~~~~~~~~~~~~~~~~~arAien~~~vv~~N~vG~~~~~~~~~~~~~~ 230 (297)
T cd07564 151 RLGALICWENYMPLARYALYAQGEQIHVAPWPDFSPYYLSREAWLAASRHYALEGRCFVLSACQVVTEEDIPADCEDDEE 230 (297)
T ss_pred eEEEEEEhhcCCHHHHHHHHHCCCeEEEECCCCcccccccHHHHHHHHHHHHHhcCCEEEEcccccChhHcccccccccc
Confidence 99999999999999999999999999998765 3334466799999999999999999999988742
Q ss_pred --CCCeeeeeEeEEECCCCCEeEeCC-CCCcEEEEEEchhhHHHHHhcCCCccc-cccccchhhh
Q 017888 297 --GAGYVAWGHSTLVGPFGEVLATTE-HAEDIIIAEIDYSILELRRTSLPLSKQ-RRGDLYQLVD 357 (364)
Q Consensus 297 --~~~~~~~G~S~Ii~p~G~il~~~~-~~e~vl~~~ldl~~~~~~r~~~~~~~~-~r~~ly~~~~ 357 (364)
.++..+.|.|+|++|+|+++++++ ++++++++++|++.+++.|..+|++.+ ||||+|++..
T Consensus 231 ~~~~~~~~~G~S~iv~P~G~il~~~~~~~e~~l~a~id~~~~~~~r~~~~~~~~~~r~~~~~~~~ 295 (297)
T cd07564 231 ADPLEVLGGGGSAIVGPDGEVLAGPLPDEEGILYADIDLDDIVEAKLDFDPVGHYSRPDVFSLTV 295 (297)
T ss_pred cccccccCCCceEEECCCCCeecCCCCCCceEEEEEecHHHHHHHHhcCCCCCCCCCchhhceee
Confidence 234678999999999999999985 899999999999999999999999999 6999998754
No 9
>PLN02504 nitrilase
Probab=100.00 E-value=9.8e-49 Score=378.25 Aligned_cols=266 Identities=26% Similarity=0.386 Sum_probs=227.1
Q ss_pred CCceEEEEEecccc-cCHHHHHHHHHHHHHHHHHCCCcEEEcCCCCCCCCCCCCcc-------------chhhhh-ccCC
Q 017888 80 VAKFKVGLCQLSVT-ADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFP-------------VYAEDI-DAGG 144 (364)
Q Consensus 80 ~~~~kIA~vQ~~v~-~d~~~n~~~i~~~i~~A~~~gadLvVfPE~~l~gy~~~~~~-------------~~~~~~-~~~~ 144 (364)
.++||||++|+++. .|.++|++++.+++++|+++|+|||||||++++||+..... .+.... ....
T Consensus 22 ~~~~kiAlvQ~~~~~~d~~~nl~~~~~li~eAa~~gadLIVfPE~~ltGyp~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 101 (346)
T PLN02504 22 SSTVRATVVQASTVFYDTPATLDKAERLIAEAAAYGSQLVVFPEAFIGGYPRGSTFGLAIGDRSPKGREDFRKYHASAID 101 (346)
T ss_pred CCceEEEEEEcCcccCCHHHHHHHHHHHHHHHHHCCCeEEEeCccccccCCcchhhccccccccchhHHHHHHHHHhccc
Confidence 34699999999976 89999999999999999999999999999999999752111 111111 1112
Q ss_pred CCchHHHHHHHHHHHcCcEEEEeeeeeecCCeeEEEEEEEcCCCcEEEEeeccccCCCCCCCcccccccccccCCC--CC
Q 017888 145 DASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGE--TP 222 (364)
Q Consensus 145 ~~~~~~~~l~~lA~~~~i~Iv~Gs~~~~~~~~~yNsa~vi~~~G~i~~~y~K~~L~~~~~P~~~~~~E~~~~~~G~--~~ 222 (364)
..++.++.|+++|++++++|++| +.+++++++||++++|+++|+++++|+|.|+++ .|+.+|.+|. .+
T Consensus 102 ~~g~~i~~l~~~A~~~~i~iv~G-~~e~~~~~~yNsa~~i~~~G~i~~~yrK~~p~~---------~E~~~f~~G~g~~~ 171 (346)
T PLN02504 102 VPGPEVDRLAAMAGKYKVYLVMG-VIERDGYTLYCTVLFFDPQGQYLGKHRKLMPTA---------LERLIWGFGDGSTI 171 (346)
T ss_pred CCCHHHHHHHHHHHHcCCEEEEe-eeecCCCceEEEEEEECCCCCEEeEEeeccCCc---------ccceeeecCCCCCC
Confidence 34678999999999999999999 567778899999999999999999999998743 5777888876 58
Q ss_pred eEEecCCeeEEEEEeccCcccHHHHHHHhCCceEEEEeCCCCCCCChhHHHHHHHHHHHhcCcEEEEecCCCC-------
Q 017888 223 TIVDTDVGRIGIGICYDIRFQELAMIYGARGAHLICYPGAFNMTTGPLHWELLQRARATDNQLYVATCSPARD------- 295 (364)
Q Consensus 223 ~vf~~~~~rigv~IC~D~~fpe~~r~~~~~Gadlil~ps~~~~~~~~~~~~~~~~~rA~en~~~vv~~n~~g~------- 295 (364)
.+|+++++|||++||||.+||+++|.++++|||++++|+++. ..+|+.++++||+||++||+.+|.+|.
T Consensus 172 ~vf~~~~griG~lICyD~~fPe~~r~la~~Gadii~~p~~~~----~~~w~~~~rarA~En~~~Vv~aN~vg~~~~~~~~ 247 (346)
T PLN02504 172 PVYDTPIGKIGAVICWENRMPLLRTAMYAKGIEIYCAPTADS----RETWQASMRHIALEGGCFVLSANQFCRRKDYPPP 247 (346)
T ss_pred ceEEcCCceEEEEEeccchhHHHHHHHHHCCCeEEEECCCCC----chhHHHHHHHHHHccCcEEEEecccccccccCcc
Confidence 899999999999999999999999999999999999999873 368999999999999999999999851
Q ss_pred -------CC-----CCeeeeeEeEEECCCCCEeEeCC-CCCcEEEEEEchhhHHHHHhcCCCcccc-ccccchhhhhh
Q 017888 296 -------EG-----AGYVAWGHSTLVGPFGEVLATTE-HAEDIIIAEIDYSILELRRTSLPLSKQR-RGDLYQLVDIQ 359 (364)
Q Consensus 296 -------~~-----~~~~~~G~S~Ii~p~G~il~~~~-~~e~vl~~~ldl~~~~~~r~~~~~~~~~-r~~ly~~~~~~ 359 (364)
.+ ++..+.|+|+|++|+|+++++.. .++++++++||++.++..|..++++.++ |||+|+|...+
T Consensus 248 ~~~~~~G~~~~~~~~~~~~~G~S~IvdP~G~vla~~~~~~e~il~adiDl~~i~~~R~~~~~~~~~~r~d~~~l~~~~ 325 (346)
T PLN02504 248 PEYLFSGTEEDLTPDSIVCAGGSVIISPSGTVLAGPNYEGEGLITADLDLGEIARAKFDFDVVGHYSRPDVLSLTVNE 325 (346)
T ss_pred cccccccccccccccccccCcceEEECCCCCEecCCCCCCCcEEEEEEcHHHHHHHHhhCCccccCCCCcceEEEEcC
Confidence 11 34678999999999999998875 6799999999999999999999887775 99999997653
No 10
>PLN02747 N-carbamolyputrescine amidase
Probab=100.00 E-value=1.2e-48 Score=371.25 Aligned_cols=273 Identities=26% Similarity=0.427 Sum_probs=232.4
Q ss_pred CCCceEEEEEecccccCHHHHHHHHHHHHHHHHHCCCcEEEcCCCCCCCCCCCCcc-chhhhhccCCCCchHHHHHHHHH
Q 017888 79 PVAKFKVGLCQLSVTADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFP-VYAEDIDAGGDASPSTAMLSEVA 157 (364)
Q Consensus 79 ~~~~~kIA~vQ~~v~~d~~~n~~~i~~~i~~A~~~gadLvVfPE~~l~gy~~~~~~-~~~~~~~~~~~~~~~~~~l~~lA 157 (364)
+.++||||++|+++.+|++.|++++.+++++|+++|||||||||++++||.+.... ...+. ......++.++.++++|
T Consensus 3 ~~~~~~va~~Q~~~~~d~~~N~~~i~~~i~~A~~~gadlvvfPE~~l~g~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~a 81 (296)
T PLN02747 3 MGRKVVVAALQFACSDDRAANVDKAERLVREAHAKGANIILIQELFEGYYFCQAQREDFFQR-AKPYEGHPTIARMQKLA 81 (296)
T ss_pred CCcceEEEEEEecCCCCHHHHHHHHHHHHHHHHHCCCcEEEcccccCCCCCccccccchhhh-cccCCCChHHHHHHHHH
Confidence 34569999999998899999999999999999999999999999999999754211 11110 00011236889999999
Q ss_pred HHcCcEEEEeeeeeecCCeeEEEEEEEcCCCcEEEEeeccccCCCCCCCcccccccccccCCC-CCeEEecCCeeEEEEE
Q 017888 158 RLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGE-TPTIVDTDVGRIGIGI 236 (364)
Q Consensus 158 ~~~~i~Iv~Gs~~~~~~~~~yNsa~vi~~~G~i~~~y~K~~L~~~~~P~~~~~~E~~~~~~G~-~~~vf~~~~~rigv~I 236 (364)
++++++|++| ++++.++++||++++|+++|+++++|+|.||+. ...+.|..+|.+|+ .+.+|+++++|+|++|
T Consensus 82 ~~~~i~i~~g-~~~~~~~~~yNs~~~i~~~G~i~~~y~K~hL~~-----~~~~~e~~~~~~G~~~~~~~~~~~~rig~~I 155 (296)
T PLN02747 82 KELGVVIPVS-FFEEANNAHYNSIAIIDADGTDLGLYRKSHIPD-----GPGYQEKFYFNPGDTGFKVFDTKFAKIGVAI 155 (296)
T ss_pred HHcCeEEEee-eeecCCCceEEEEEEECCCCCCcceEEEEecCC-----CCCccceeeecCCCCCCeeEEcCCccEEEEE
Confidence 9999999998 567778899999999999999999999999843 22456777899997 4899999999999999
Q ss_pred eccCcccHHHHHHHhCCceEEEEeCCCCCCC------ChhHHHHHHHHHHHhcCcEEEEecCCCCC-------CCCeeee
Q 017888 237 CYDIRFQELAMIYGARGAHLICYPGAFNMTT------GPLHWELLQRARATDNQLYVATCSPARDE-------GAGYVAW 303 (364)
Q Consensus 237 C~D~~fpe~~r~~~~~Gadlil~ps~~~~~~------~~~~~~~~~~~rA~en~~~vv~~n~~g~~-------~~~~~~~ 303 (364)
|||.+||++++.++++|||+|++|++|+... ...+|..+.++||+||++||+.+|..|.. ..+..|.
T Consensus 156 C~D~~fpe~~r~~~~~Ga~lil~ps~~~~~~~~~~~~~~~~~~~~~~~rA~en~~~vv~~N~~G~~~~~~~~g~~~~~~~ 235 (296)
T PLN02747 156 CWDQWFPEAARAMVLQGAEVLLYPTAIGSEPQDPGLDSRDHWKRVMQGHAGANLVPLVASNRIGTEILETEHGPSKITFY 235 (296)
T ss_pred EccccchHHHHHHHHCCCCEEEEeCccCCCCcccccchHHHHHHHHHHHHHHcCCeEEEEecccccccccccCCcCceEe
Confidence 9999999999999999999999999975421 23579989999999999999999988742 1257889
Q ss_pred eEeEEECCCCCEeEeCC-CCCcEEEEEEchhhHHHHHhcCCCccccccccchhhhh
Q 017888 304 GHSTLVGPFGEVLATTE-HAEDIIIAEIDYSILELRRTSLPLSKQRRGDLYQLVDI 358 (364)
Q Consensus 304 G~S~Ii~p~G~il~~~~-~~e~vl~~~ldl~~~~~~r~~~~~~~~~r~~ly~~~~~ 358 (364)
|.|+|++|+|+++++++ ++++++++++|++.++..|..+++++++||++|+.++.
T Consensus 236 G~S~i~~p~G~vl~~~~~~~e~~~~adid~~~~~~~r~~~~~~~~~r~~~~~~~~~ 291 (296)
T PLN02747 236 GGSFIAGPTGEIVAEADDKAEAVLVAEFDLDQIKSKRASWGVFRDRRPDLYKVLLT 291 (296)
T ss_pred eeeEEECCCCCEeecCCCCCCcEEEEEEcHHHHHHHHHhCCchhhcChhHHHHHHh
Confidence 99999999999999985 67899999999999999999999999999999987665
No 11
>cd07573 CPA N-carbamoylputrescine amidohydrolase (CPA) (class 11 nitrilases). CPA (EC 3.5.1.53, also known as N-carbamoylputrescine amidase and carbamoylputrescine hydrolase) converts N-carbamoylputrescine to putrescine, a step in polyamine biosynthesis in plants and bacteria. This subgroup includes Arabidopsis thaliana CPA, also known as nitrilase-like 1 (NLP1), and Pseudomonas aeruginosa AguB. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 11. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer; P. aeruginosa AugB is a homohexamer, Arabidopsis thaliana NLP1 is a homooctomer.
Probab=100.00 E-value=1.4e-48 Score=368.48 Aligned_cols=267 Identities=32% Similarity=0.520 Sum_probs=230.2
Q ss_pred eEEEEEecccccCHHHHHHHHHHHHHHHHHCCCcEEEcCCCCCCCCCCCCcc-chhhhhccCCCCchHHHHHHHHHHHcC
Q 017888 83 FKVGLCQLSVTADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFP-VYAEDIDAGGDASPSTAMLSEVARLLK 161 (364)
Q Consensus 83 ~kIA~vQ~~v~~d~~~n~~~i~~~i~~A~~~gadLvVfPE~~l~gy~~~~~~-~~~~~~~~~~~~~~~~~~l~~lA~~~~ 161 (364)
||||++|+++.+|++.|++++.+.+++|+++|+|||||||++++||...+.. ...+. .......+.++.++++|++++
T Consensus 1 ~~ia~~Q~~~~~d~~~n~~~~~~~i~~A~~~gadlivfPE~~l~g~~~~~~~~~~~~~-~~~~~~~~~~~~l~~la~~~~ 79 (284)
T cd07573 1 VTVALVQMACSEDPEANLAKAEELVREAAAQGAQIVCLQELFETPYFCQEEDEDYFDL-AEPPIPGPTTARFQALAKELG 79 (284)
T ss_pred CEEEEEEeeccCCHHHHHHHHHHHHHHHHHCCCcEEEccccccCCCCcccccchhHHh-ccccCCCHHHHHHHHHHHHCC
Confidence 6999999999899999999999999999999999999999999999765421 11110 000123468899999999999
Q ss_pred cEEEEeeeeee-cCCeeEEEEEEEcCCCcEEEEeeccccCCCCCCCcccccccccccCCC-CCeEEecCCeeEEEEEecc
Q 017888 162 ITIVGGSIPER-SGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGE-TPTIVDTDVGRIGIGICYD 239 (364)
Q Consensus 162 i~Iv~Gs~~~~-~~~~~yNsa~vi~~~G~i~~~y~K~~L~~~~~P~~~~~~E~~~~~~G~-~~~vf~~~~~rigv~IC~D 239 (364)
++|++|. .++ +++++||++++|+++|+++.+|+|.||+. ...+.|..+|.+|+ .+.+|+++++|+|++||||
T Consensus 80 i~iv~g~-~~~~~~~~~yNs~~v~~~~G~i~~~y~K~~l~~-----~~~~~e~~~~~~G~~~~~~~~~~~~~ig~~IC~D 153 (284)
T cd07573 80 VVIPVSL-FEKRGNGLYYNSAVVIDADGSLLGVYRKMHIPD-----DPGYYEKFYFTPGDTGFKVFDTRYGRIGVLICWD 153 (284)
T ss_pred EEEEecc-eeeCCCCcEEEEEEEECCCCCEEeEEeeeccCC-----CCcccccceecCCCCCCceEecCCceEEEEEecc
Confidence 9999995 444 45689999999999999999999999843 22456888899999 7999999999999999999
Q ss_pred CcccHHHHHHHhCCceEEEEeCCCCCC--------CChhHHHHHHHHHHHhcCcEEEEecCCCCCC---CCeeeeeEeEE
Q 017888 240 IRFQELAMIYGARGAHLICYPGAFNMT--------TGPLHWELLQRARATDNQLYVATCSPARDEG---AGYVAWGHSTL 308 (364)
Q Consensus 240 ~~fpe~~r~~~~~Gadlil~ps~~~~~--------~~~~~~~~~~~~rA~en~~~vv~~n~~g~~~---~~~~~~G~S~I 308 (364)
.+||++++.++++|||++++|++|++. ....+|..+.++||+||++|++.+|+.|..+ .+..|.|+|+|
T Consensus 154 ~~fpe~~r~~~~~gadlil~ps~~~~~~~~~~~~~~~~~~~~~~~~~rA~e~~~~vv~an~~G~~~~~~~~~~~~G~S~i 233 (284)
T cd07573 154 QWFPEAARLMALQGAEILFYPTAIGSEPQEPPEGLDQRDAWQRVQRGHAIANGVPVAAVNRVGVEGDPGSGITFYGSSFI 233 (284)
T ss_pred ccchHHHHHHHHCCCCEEEecCcccCCCCCccccCCchHHHHHHHHHHHHHcCceEEEeccccccCCCCCCceeeceeEE
Confidence 999999999999999999999997543 1235788888999999999999999988644 36899999999
Q ss_pred ECCCCCEeEeCC-CCCcEEEEEEchhhHHHHHhcCCCccccccccchhh
Q 017888 309 VGPFGEVLATTE-HAEDIIIAEIDYSILELRRTSLPLSKQRRGDLYQLV 356 (364)
Q Consensus 309 i~p~G~il~~~~-~~e~vl~~~ldl~~~~~~r~~~~~~~~~r~~ly~~~ 356 (364)
++|+|+++++++ ++++++++++|++.++.+|..+|++++||+++|+.+
T Consensus 234 ~~p~G~i~~~~~~~~~~v~~a~id~~~~~~~r~~~~~~~~~~~~~~~~~ 282 (284)
T cd07573 234 ADPFGEILAQASRDEEEILVAEFDLDEIEEVRRAWPFFRDRRPDLYGAL 282 (284)
T ss_pred ECCCCCeeeccCCCCCcEEEEEecHHHHHHHHhhChhhhhcChhhhhhh
Confidence 999999999986 689999999999999999999999999999999864
No 12
>cd07583 nitrilase_5 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=100.00 E-value=1.1e-48 Score=363.11 Aligned_cols=252 Identities=42% Similarity=0.696 Sum_probs=225.9
Q ss_pred EEEEEecccc-cCHHHHHHHHHHHHHHHHHCCCcEEEcCCCCCCCCCCCCccchhhhhccCCCCchHHHHHHHHHHHcCc
Q 017888 84 KVGLCQLSVT-ADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKI 162 (364)
Q Consensus 84 kIA~vQ~~v~-~d~~~n~~~i~~~i~~A~~~gadLvVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~~~i 162 (364)
|||++|+++. .|++.|++++.+++++|+++|+|||||||++++||...+....++. ..++.++.++++|+++++
T Consensus 1 rva~~Q~~~~~~d~~~n~~~i~~~i~~A~~~g~dlvv~PE~~l~g~~~~~~~~~~~~-----~~~~~~~~l~~~a~~~~~ 75 (253)
T cd07583 1 KIALIQLDIVWGDPEANIERVESLIEEAAAAGADLIVLPEMWNTGYFLDDLYELADE-----DGGETVSFLSELAKKHGV 75 (253)
T ss_pred CEEEEEeecCcCCHHHHHHHHHHHHHHHHHCCCCEEEcCCccCCCCChhhHHhhhcc-----cCchHHHHHHHHHHHcCc
Confidence 6999999987 8999999999999999999999999999999999976543322121 235789999999999999
Q ss_pred EEEEeeeeeecCCeeEEEEEEEcCCCcEEEEeeccccCCCCCCCcccccccccccCCCCCeEEecCCeeEEEEEeccCcc
Q 017888 163 TIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETPTIVDTDVGRIGIGICYDIRF 242 (364)
Q Consensus 163 ~Iv~Gs~~~~~~~~~yNsa~vi~~~G~i~~~y~K~~L~~~~~P~~~~~~E~~~~~~G~~~~vf~~~~~rigv~IC~D~~f 242 (364)
+|++|+.++.+++++||++++|+|+|+++.+|+|+||+++ +.|..+|.+|+++.+|+++++|+|++||||.+|
T Consensus 76 ~iv~G~~~~~~~~~~yNs~~~i~~~G~i~~~y~K~~l~~~-------~~e~~~~~~G~~~~v~~~~~~rig~~IC~D~~~ 148 (253)
T cd07583 76 NIVAGSVAEKEGGKLYNTAYVIDPDGELIATYRKIHLFGL-------MGEDKYLTAGDELEVFELDGGKVGLFICYDLRF 148 (253)
T ss_pred EEEeceEEecCCCcEEEEEEEECCCCcEEEEEeeeeCCCC-------cCchhhccCCCCceEEEeCCeEEEEEEEecccc
Confidence 9999976677778999999999999999999999999763 257788999999999999999999999999999
Q ss_pred cHHHHHHHhCCceEEEEeCCCCCCCChhHHHHHHHHHHHhcCcEEEEecCCCCCCCCeeeeeEeEEECCCCCEeEeCCCC
Q 017888 243 QELAMIYGARGAHLICYPGAFNMTTGPLHWELLQRARATDNQLYVATCSPARDEGAGYVAWGHSTLVGPFGEVLATTEHA 322 (364)
Q Consensus 243 pe~~r~~~~~Gadlil~ps~~~~~~~~~~~~~~~~~rA~en~~~vv~~n~~g~~~~~~~~~G~S~Ii~p~G~il~~~~~~ 322 (364)
||+.+.++++|||+|++|++|... ...+|..+.++||+||++|++++|++|..+ +..|.|.|+|++|+|+++++++.+
T Consensus 149 pe~~r~~~~~ga~ll~~ps~~~~~-~~~~~~~~~~~rA~en~~~vv~~n~~G~~~-~~~~~G~S~ii~p~G~il~~~~~~ 226 (253)
T cd07583 149 PELFRKLALEGAEILFVPAEWPAA-RIEHWRTLLRARAIENQAFVVACNRVGTDG-GNEFGGHSMVIDPWGEVLAEAGEE 226 (253)
T ss_pred HHHHHHHHHcCCcEEEECCCCCCC-chHHHHHHHHHHHHHhCCEEEEEcCcccCC-CceecceeEEECCCchhheecCCC
Confidence 999999999999999999998754 346788889999999999999999988654 567899999999999999998778
Q ss_pred CcEEEEEEchhhHHHHHhcCCCccccc
Q 017888 323 EDIIIAEIDYSILELRRTSLPLSKQRR 349 (364)
Q Consensus 323 e~vl~~~ldl~~~~~~r~~~~~~~~~r 349 (364)
++++++++|++.++.+|..+++++|||
T Consensus 227 ~~~~~~~i~l~~~~~~r~~~~~~~~~~ 253 (253)
T cd07583 227 EEILTAEIDLEEVAEVRKKIPVFKDRR 253 (253)
T ss_pred ceEEEEEecHHHHHHHHHhCCchhhcC
Confidence 999999999999999999999999986
No 13
>cd07576 R-amidase_like Pseudomonas sp. MCI3434 R-amidase and related proteins (putative class 13 nitrilases). Pseudomonas sp. MCI3434 R-amidase hydrolyzes (R,S)-piperazine-2-tert-butylcarboxamide to form (R)-piperazine-2-carboxylic acid. It does so with strict R-stereoselectively. Its preferred substrates are carboxamide compounds which have the amino or imino group connected to their beta- or gamma-carbon. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), class 13 represents proteins that at the time were difficult to place in a distinct similarity group. It has been suggested that this subgroup represents a new class. Members of the nitrilase superfamily generally form homomeric compl
Probab=100.00 E-value=4.2e-48 Score=359.24 Aligned_cols=252 Identities=33% Similarity=0.502 Sum_probs=223.3
Q ss_pred EEEEEecccc-cCHHHHHHHHHHHHHHHHHCCCcEEEcCCCCCCCCCCCCccc-hhhhhccCCCCchHHHHHHHHHHHcC
Q 017888 84 KVGLCQLSVT-ADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPV-YAEDIDAGGDASPSTAMLSEVARLLK 161 (364)
Q Consensus 84 kIA~vQ~~v~-~d~~~n~~~i~~~i~~A~~~gadLvVfPE~~l~gy~~~~~~~-~~~~~~~~~~~~~~~~~l~~lA~~~~ 161 (364)
|||++|+++. +|+++|++++.+++++|+++|+|||||||++++||...+... .... ...++.+.++++|++++
T Consensus 1 kva~~Q~~~~~~d~~~n~~~i~~~i~~a~~~ga~lvv~PE~~l~g~~~~~~~~~~~~~-----~~~~~~~~l~~~a~~~~ 75 (254)
T cd07576 1 RLALYQGPARDGDVAANLARLDEAAARAAAAGADLLVFPELFLTGYNIGDAVARLAEP-----ADGPALQALRAIARRHG 75 (254)
T ss_pred CEEEEecCCCCCCHHHHHHHHHHHHHHHHHcCCCEEEccCccccCCCCcchhhhhhcc-----cCChHHHHHHHHHHHcC
Confidence 7999999985 899999999999999999999999999999999997644221 1111 23568999999999999
Q ss_pred cEEEEeeeeeecCCeeEEEEEEEcCCCcEEEEeeccccCCCCCCCcccccccccccCCCCCeEEecCCeeEEEEEeccCc
Q 017888 162 ITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETPTIVDTDVGRIGIGICYDIR 241 (364)
Q Consensus 162 i~Iv~Gs~~~~~~~~~yNsa~vi~~~G~i~~~y~K~~L~~~~~P~~~~~~E~~~~~~G~~~~vf~~~~~rigv~IC~D~~ 241 (364)
++|++| +++..++++||++++|+++|+++.+|+|.||+++ .|..+|.+|+++.+|+++++|+|++||||.+
T Consensus 76 ~~ii~G-~~~~~~~~~yNs~~~i~~~G~i~~~y~K~~l~~~--------~E~~~~~~G~~~~v~~~~~~kig~~IC~D~~ 146 (254)
T cd07576 76 IAIVVG-YPERAGGAVYNAAVLIDEDGTVLANYRKTHLFGD--------SERAAFTPGDRFPVVELRGLRVGLLICYDVE 146 (254)
T ss_pred CEEEEe-ccccCCCceEEEEEEECCCCCEeeEEEeeccCCc--------chhhhccCCCCceEEEECCeEEEEEEeecCC
Confidence 999999 7777788999999999999999999999999652 4777899999999999999999999999999
Q ss_pred ccHHHHHHHhCCceEEEEeCCCCCCCChhHHHHHHHHHHHhcCcEEEEecCCCCCCCCeeeeeEeEEECCCCCEeEeCCC
Q 017888 242 FQELAMIYGARGAHLICYPGAFNMTTGPLHWELLQRARATDNQLYVATCSPARDEGAGYVAWGHSTLVGPFGEVLATTEH 321 (364)
Q Consensus 242 fpe~~r~~~~~Gadlil~ps~~~~~~~~~~~~~~~~~rA~en~~~vv~~n~~g~~~~~~~~~G~S~Ii~p~G~il~~~~~ 321 (364)
||++++.++++|||+|++|++++...+ .+|..+.++||+||++|++++|.+|.. ++..+.|.|+|++|+|+++++++.
T Consensus 147 fpe~~~~~~~~gadii~~p~~~~~~~~-~~~~~~~~~rA~en~~~vv~an~~G~~-~~~~~~G~S~i~~p~G~il~~~~~ 224 (254)
T cd07576 147 FPELVRALALAGADLVLVPTALMEPYG-FVARTLVPARAFENQIFVAYANRCGAE-DGLTYVGLSSIAGPDGTVLARAGR 224 (254)
T ss_pred CCHHHHHHHHCCCCEEEECCccCCCcc-hhhhhhhHHHHHhCCCEEEEEcccCCC-CCceeeeeeEEECCCCCEeEecCC
Confidence 999999999999999999998765433 467788899999999999999998764 356789999999999999999875
Q ss_pred CCcEEEEEEchhhHHHHHhcCCCccccccc
Q 017888 322 AEDIIIAEIDYSILELRRTSLPLSKQRRGD 351 (364)
Q Consensus 322 ~e~vl~~~ldl~~~~~~r~~~~~~~~~r~~ 351 (364)
.++++++++|++.++..|..+|++++||++
T Consensus 225 ~e~~~~~~id~~~~~~~R~~~~~~~~~~~~ 254 (254)
T cd07576 225 GEALLVADLDPAALAAARRENPYLADRRPE 254 (254)
T ss_pred CCeEEEEEcCHHHHHhhhhcCchhhhcCCC
Confidence 599999999999999999999999999975
No 14
>cd07580 nitrilase_2 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=100.00 E-value=3.1e-48 Score=363.31 Aligned_cols=257 Identities=34% Similarity=0.515 Sum_probs=224.2
Q ss_pred EEEEEecccc-cCHHHHHHHHHHHHHHHHHCCCcEEEcCCCCCCCCCCCCccchhhhhccCCCCchHHHHHHHHHHHcCc
Q 017888 84 KVGLCQLSVT-ADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKI 162 (364)
Q Consensus 84 kIA~vQ~~v~-~d~~~n~~~i~~~i~~A~~~gadLvVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~~~i 162 (364)
|||++|+++. +++++|++++.+++++|+++|+|||||||++++||...+.....+... ....++..+.++++|+++++
T Consensus 1 ria~~Q~~~~~~~~~~n~~~~~~~i~~a~~~g~dlvvfPE~~l~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~~~~~ 79 (268)
T cd07580 1 RVACVQFDPRVGDLDANLARSIELIREAADAGANLVVLPELANTGYVFESRDEAFALAE-EVPDGASTRAWAELAAELGL 79 (268)
T ss_pred CEEEEEccCccCcHHHHHHHHHHHHHHHHHcCCCEEEcCCcccccCCCCCHHHHHHhhc-cCCCCchHHHHHHHHHHcCc
Confidence 6999999987 899999999999999999999999999999999997755332211110 11124578899999999999
Q ss_pred EEEEeeeeeecCCeeEEEEEEEcCCCcEEEEeeccccCCCCCCCcccccccccccCCCC-CeEEecCCeeEEEEEeccCc
Q 017888 163 TIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGET-PTIVDTDVGRIGIGICYDIR 241 (364)
Q Consensus 163 ~Iv~Gs~~~~~~~~~yNsa~vi~~~G~i~~~y~K~~L~~~~~P~~~~~~E~~~~~~G~~-~~vf~~~~~rigv~IC~D~~ 241 (364)
+|++| +++++++++||++++|+++|. +.+|+|+||++ .|..+|++|+. +.+|+++++|+|++||||++
T Consensus 80 ~i~~G-~~~~~~~~~yNs~~vi~~~g~-~~~y~K~~l~~---------~e~~~f~~G~~~~~v~~~~~~~ig~~IC~D~~ 148 (268)
T cd07580 80 YIVAG-FAERDGDRLYNSAVLVGPDGV-IGTYRKAHLWN---------EEKLLFEPGDLGLPVFDTPFGRIGVAICYDGW 148 (268)
T ss_pred EEEee-cccccCCceEEEEEEECCCCc-EEEEEEecCCc---------hhcceecCCCCCCceEEcCCCcEEEEEECccc
Confidence 99999 677777899999999999995 78999999964 47788999998 99999999999999999999
Q ss_pred ccHHHHHHHhCCceEEEEeCCCCCCCCh-----hHHHHHHHHHHHhcCcEEEEecCCCCCCCCeeeeeEeEEECCCCCEe
Q 017888 242 FQELAMIYGARGAHLICYPGAFNMTTGP-----LHWELLQRARATDNQLYVATCSPARDEGAGYVAWGHSTLVGPFGEVL 316 (364)
Q Consensus 242 fpe~~r~~~~~Gadlil~ps~~~~~~~~-----~~~~~~~~~rA~en~~~vv~~n~~g~~~~~~~~~G~S~Ii~p~G~il 316 (364)
||++++.++.+|||+|++|++|++..+. .+|..+.++||+||++||++||.+|.. .+..++|+|+|++|+|+++
T Consensus 149 fpe~~r~~~~~ga~li~~ps~~~~~~~~~~~~~~~~~~~~~arA~en~~~vv~~n~~G~~-~~~~~~G~S~ii~p~G~~~ 227 (268)
T cd07580 149 FPETFRLLALQGADIVCVPTNWVPMPRPPEGGPPMANILAMAAAHSNGLFIACADRVGTE-RGQPFIGQSLIVGPDGWPL 227 (268)
T ss_pred chHHHHHHHHcCCCEEEEcCcccccCCcccccCcHHHHhhHHHHhhCCcEEEEEeeeeec-cCceEeeeeEEECCCCCee
Confidence 9999999999999999999998765432 578888899999999999999998765 4577999999999999999
Q ss_pred EeCC--CCCcEEEEEEchhhHHHHHhc--CCCccccccccc
Q 017888 317 ATTE--HAEDIIIAEIDYSILELRRTS--LPLSKQRRGDLY 353 (364)
Q Consensus 317 ~~~~--~~e~vl~~~ldl~~~~~~r~~--~~~~~~~r~~ly 353 (364)
++++ .+++++++++|++.++.+|.. +|++++||+++|
T Consensus 228 ~~~~~~~~~~~~~~~id~~~~~~~r~~~~~~~~~~~r~~~y 268 (268)
T cd07580 228 AGPASGDEEEILLADIDLTAARRKRIWNSNDVLRDRRPDLY 268 (268)
T ss_pred eecCCCCCCeEEEEEecHHHHHHhhcCCcchhhhhcCcccC
Confidence 9875 489999999999999999988 599999999998
No 15
>KOG0807 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism]
Probab=100.00 E-value=1.6e-49 Score=348.45 Aligned_cols=270 Identities=38% Similarity=0.626 Sum_probs=243.9
Q ss_pred eEEEEEecccccCHHHHHHHHHHHHHHHHHCCCcEEEcCCCCCC-CCCCCCccchhhhhccCCCCchHHHHHHHHHHHcC
Q 017888 83 FKVGLCQLSVTADKERNIAHARRAIEEAAEKGAKLILLPEIWNS-PYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLK 161 (364)
Q Consensus 83 ~kIA~vQ~~v~~d~~~n~~~i~~~i~~A~~~gadLvVfPE~~l~-gy~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~~~ 161 (364)
.+||++|+....|+..|++...++|++|++.||++|.|||.+-- |-....-.++++.+ .+++++..+++|++++
T Consensus 16 ~~vAv~Qm~S~~Dl~kNl~~~keLi~eA~~k~A~~iflPE~~dFi~~n~~esi~Lae~l-----~~k~m~~y~elar~~n 90 (295)
T KOG0807|consen 16 KRVAVAQMTSSNDLTKNLATCKELISEAAQKGAKLIFLPEAFDFIGQNPLESIELAEPL-----DGKFMEQYRELARSHN 90 (295)
T ss_pred ceeEEEeeccchHHHHHHHHHHHHHHHHHHcCCCEEEcchhhhhhcCCcccceeccccc-----ChHHHHHHHHHHHhcC
Confidence 69999999999999999999999999999999999999999621 22111222344443 3689999999999999
Q ss_pred cEEEEeeeeeecC---CeeEEEEEEEcCCCcEEEEeeccccCCCCCCCcccccccccccCCCC-CeEEecCCeeEEEEEe
Q 017888 162 ITIVGGSIPERSG---DRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGET-PTIVDTDVGRIGIGIC 237 (364)
Q Consensus 162 i~Iv~Gs~~~~~~---~~~yNsa~vi~~~G~i~~~y~K~~L~~~~~P~~~~~~E~~~~~~G~~-~~vf~~~~~rigv~IC 237 (364)
|++..|.+.++.+ .+++|+-++++.+|+++..|+|.|||+.++||.....|.....||.. ...++++-||+|..||
T Consensus 91 IwlSlgg~~~r~~~~~~k~~N~hl~id~~G~i~a~Y~KlHLFDVeipg~~~lkES~~t~pG~~i~~pv~tP~GklGlaIC 170 (295)
T KOG0807|consen 91 IWLSLGGHHERSDDGNQKLRNTHLLIDSKGEIRAEYQKLHLFDVEIPGGPRLKESNTTQPGTAIESPVDTPLGKLGLAIC 170 (295)
T ss_pred eeEEeccccCCCccccceeeeeEEEEcCCchHHHHHhhhceeEeecCCCcccccccCcCCCcccCCccCCcccccceeee
Confidence 9998886666543 68999999999999999999999999999999999999999999987 5679999999999999
Q ss_pred ccCcccHHHHHHHhCCceEEEEeCCCCCCCChhHHHHHHHHHHHhcCcEEEEecCCCCCCCCeeeeeEeEEECCCCCEeE
Q 017888 238 YDIRFQELAMIYGARGAHLICYPGAFNMTTGPLHWELLQRARATDNQLYVATCSPARDEGAGYVAWGHSTLVGPFGEVLA 317 (364)
Q Consensus 238 ~D~~fpe~~r~~~~~Gadlil~ps~~~~~~~~~~~~~~~~~rA~en~~~vv~~n~~g~~~~~~~~~G~S~Ii~p~G~il~ 317 (364)
||++|||+...+.+.||+++.+||+|...+|..||+.+.++||+|++|||++++.+|..+.....+|+|+|+||+|.+++
T Consensus 171 YDiRFpE~sl~LR~~gA~iLtyPSAFT~~TG~AHWEiLlRARAietQCYVvaaaQ~G~HneKR~SyGhSMiVDPWGtVva 250 (295)
T KOG0807|consen 171 YDIRFPELSLKLRKMGAQILTYPSAFTIKTGEAHWEILLRARAIETQCYVVAAAQVGKHNEKRESYGHSMIVDPWGTVVA 250 (295)
T ss_pred eeccCchHHHHHHHcCCcEEeccchhhhcccHHHHHHHHHHHHhhcceEEEehhhcccccchhhccCcceEEcchhhhhe
Confidence 99999999999999999999999999998999999999999999999999999999988888889999999999999999
Q ss_pred eCCC--CCcEEEEEEchhhHHHHHhcCCCccccccccchhhh
Q 017888 318 TTEH--AEDIIIAEIDYSILELRRTSLPLSKQRRGDLYQLVD 357 (364)
Q Consensus 318 ~~~~--~e~vl~~~ldl~~~~~~r~~~~~~~~~r~~ly~~~~ 357 (364)
.+.. ..+++++++|++.++..|.+.|++.+||+|+|.+..
T Consensus 251 ~~se~~~~~l~~AdiDlslld~lr~~mP~~~hRr~dly~~~~ 292 (295)
T KOG0807|consen 251 RCSERTGPGLILADIDLSLLDSLRTKMPLFNHRRNDLYTLFS 292 (295)
T ss_pred ecCCCCCCceEEEEccHHHHHHHHHhCchhhhcccchhhhhc
Confidence 9953 489999999999999999999999999999998764
No 16
>cd07579 nitrilase_1_R2 Second nitrilase domain of an uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). Members of this subgroup have two nitrilase domains. This is the second of those two domains. The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=100.00 E-value=2.3e-48 Score=366.15 Aligned_cols=245 Identities=33% Similarity=0.508 Sum_probs=206.2
Q ss_pred EEEEEecccccCHHHHHHHHHHHHHHHHHCCCcEEEcCCCCCCCCCCCCccchhhhhccCCCCchHHHHHHHHHHHcCcE
Q 017888 84 KVGLCQLSVTADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKIT 163 (364)
Q Consensus 84 kIA~vQ~~v~~d~~~n~~~i~~~i~~A~~~gadLvVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~~~i~ 163 (364)
|||++|+++..|+++|++++.+++++|+++|+|||||||++++||.... ..++. ..++.++.++++|++++++
T Consensus 1 ria~~Q~~~~~d~~~Nl~~~~~~i~~A~~~gadlvvfPE~~ltG~~~~~--~~~~~-----~~~~~~~~l~~lA~~~~i~ 73 (279)
T cd07579 1 RIAVAQFAPTPDIAGNLATIDRLAAEAKATGAELVVFPELALTGLDDPA--SEAES-----DTGPAVSALRRLARRLRLY 73 (279)
T ss_pred CEEEEeccCccCHHHHHHHHHHHHHHHHHCCCCEEEeCCccccCCCChH--Hhccc-----CCCHHHHHHHHHHHHcCeE
Confidence 6999999987899999999999999999999999999999999996421 11111 1247899999999999999
Q ss_pred EEEeeeeeecCCeeEEEEEEEcCCCcEEEEeeccccCCCCCCCcccccccccccCCCCCeEEecCCeeEEEEEeccCccc
Q 017888 164 IVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETPTIVDTDVGRIGIGICYDIRFQ 243 (364)
Q Consensus 164 Iv~Gs~~~~~~~~~yNsa~vi~~~G~i~~~y~K~~L~~~~~P~~~~~~E~~~~~~G~~~~vf~~~~~rigv~IC~D~~fp 243 (364)
|++| ++++.++++||++++|+++| ++++|+|.||++ .|..+|++|+++.+|+++++|+|++||||.+||
T Consensus 74 iv~G-~~~~~~~~~yNs~~vi~~~G-~i~~Y~K~hL~~---------~E~~~f~~G~~~~v~~~~~~kiG~~ICyD~~fP 142 (279)
T cd07579 74 LVAG-FAEADGDGLYNSAVLVGPEG-LVGTYRKTHLIE---------PERSWATPGDTWPVYDLPLGRVGLLIGHDALFP 142 (279)
T ss_pred EEEe-ceEccCCcEEEEEEEEeCCe-eEEEEecccCCC---------cchhhccCCCCCeeEEcCceeEEEEEeccccCc
Confidence 9999 56777788999999999999 679999999964 477889999999999999999999999999999
Q ss_pred HHHHHHHhCCceEEEEeCCCCC-----------------CCC--hhHHHHHHHHHHHhcCcEEEEecCCCCCCCCeeeee
Q 017888 244 ELAMIYGARGAHLICYPGAFNM-----------------TTG--PLHWELLQRARATDNQLYVATCSPARDEGAGYVAWG 304 (364)
Q Consensus 244 e~~r~~~~~Gadlil~ps~~~~-----------------~~~--~~~~~~~~~~rA~en~~~vv~~n~~g~~~~~~~~~G 304 (364)
|++|.++++|||+|++|++|.. ..+ ..+|. ++++||+||++||++||.+|.. ..+.|
T Consensus 143 e~~r~~a~~Ga~ii~~psa~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~-~~~aRA~EN~~~vv~aN~~g~~---~~~~G 218 (279)
T cd07579 143 EAGRVLALRGCDLLACPAAIAIPFVGAHAGTSVPQPYPIPTGADPTHWH-LARVRAGENNVYFAFANVPDPA---RGYTG 218 (279)
T ss_pred HHHHHHHHCCCCEEEECCCcCCccccccccccccCCCCCcCccchhHHH-HhHhHHhhCCeEEEEeeccCCc---ccccc
Confidence 9999999999999999998743 111 14787 5899999999999999998753 23689
Q ss_pred EeEEECCCCCEeE----eCCCCCcEEEEEEchhhHHHHHhcCCCccccccccc
Q 017888 305 HSTLVGPFGEVLA----TTEHAEDIIIAEIDYSILELRRTSLPLSKQRRGDLY 353 (364)
Q Consensus 305 ~S~Ii~p~G~il~----~~~~~e~vl~~~ldl~~~~~~r~~~~~~~~~r~~ly 353 (364)
.|+|++|+|+++. .++.+|++++++||++.++. .+|++.+||+|||
T Consensus 219 ~S~ii~P~G~v~~~~~~~~~~~e~~l~a~id~~~~~~---~~~~~~~rr~~~~ 268 (279)
T cd07579 219 WSGVFGPDTFAFPRQEAAIGDEEGIAWALIDTSNLDS---RYPTNVVRRKDLV 268 (279)
T ss_pred ccEEECCCeEEcchhhcccCCCCcEEEEEecchhhcc---cCCchhhhhHHHH
Confidence 9999999999983 34577899999999998877 3444444444444
No 17
>cd07569 DCase N-carbamyl-D-amino acid amidohydrolase (DCase, class 6 nitrilases). DCase hydrolyses N-carbamyl-D-amino acids to produce D-amino acids. It is an important biocatalyst in the pharmaceutical industry, producing useful D-amino acids for example in the preparation of beta-lactam antibiotics. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 6. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. Agrobacterium radiobacter DCase forms a tetramer (dimer of dimers). Some DCases may form trimers.
Probab=100.00 E-value=2.7e-47 Score=363.01 Aligned_cols=273 Identities=25% Similarity=0.358 Sum_probs=226.1
Q ss_pred ceEEEEEecccc-c--CHHHHHHHHHHHHHHHHHCCCcEEEcCCCCCCCCCCCCcc----chhhhhccCCCCchHHHHHH
Q 017888 82 KFKVGLCQLSVT-A--DKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFP----VYAEDIDAGGDASPSTAMLS 154 (364)
Q Consensus 82 ~~kIA~vQ~~v~-~--d~~~n~~~i~~~i~~A~~~gadLvVfPE~~l~gy~~~~~~----~~~~~~~~~~~~~~~~~~l~ 154 (364)
+||||++|+++. + +.++|++++.+++++|+++|||||||||++++||...... ...... .....++..+.+.
T Consensus 3 ~~rva~~Q~~~~~~~~~~~~n~~~i~~~i~~A~~~gadlivfPE~~l~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~ 81 (302)
T cd07569 3 QVILAAAQMGPIARAETRESVVARLIALLEEAASRGAQLVVFPELALTTFFPRWYFPDEAELDSFF-ETEMPNPETQPLF 81 (302)
T ss_pred eEEEEEEeeccccccCCHHHHHHHHHHHHHHHHhCCCcEEEcccccccCcccccccCChHHhhhhh-hhcCCChhHHHHH
Confidence 599999999864 3 8899999999999999999999999999999998643211 011000 0112356888999
Q ss_pred HHHHHcCcEEEEeeeeee-cCC---eeEEEEEEEcCCCcEEEEeeccccCCCC--CCCc-ccccccccccCCC-CCeEEe
Q 017888 155 EVARLLKITIVGGSIPER-SGD---RLYNTCCVFGSDGKLIAKHRKIHLFDID--IPGK-ITFIESKSLTAGE-TPTIVD 226 (364)
Q Consensus 155 ~lA~~~~i~Iv~Gs~~~~-~~~---~~yNsa~vi~~~G~i~~~y~K~~L~~~~--~P~~-~~~~E~~~~~~G~-~~~vf~ 226 (364)
++|++++++|++| +++. .++ ++||++++|+++|+++++|+|+||++++ +|.. ..+.|+.+|.+|+ .+.+|+
T Consensus 82 ~~a~~~~i~iv~G-~~~~~~~~~~~~~yNsa~~i~~~G~i~~~y~K~~l~~~~e~~p~~~~~~~e~~~~~~G~~~~~v~~ 160 (302)
T cd07569 82 DRAKELGIGFYLG-YAELTEDGGVKRRFNTSILVDKSGKIVGKYRKVHLPGHKEPEPYRPFQHLEKRYFEPGDLGFPVFR 160 (302)
T ss_pred HHHHHhCeEEEEe-ceeecCCCCcceeeeEEEEECCCCCEeeeeeEEecCCCcccCcccccccccccccCCCCCCCceEe
Confidence 9999999999999 5654 344 8999999999999999999999998764 2321 1234778899999 899999
Q ss_pred cCCeeEEEEEeccCcccHHHHHHHhCCceEEEEeCCCCCC---C------ChhHHHHHHHHHHHhcCcEEEEecCCCCCC
Q 017888 227 TDVGRIGIGICYDIRFQELAMIYGARGAHLICYPGAFNMT---T------GPLHWELLQRARATDNQLYVATCSPARDEG 297 (364)
Q Consensus 227 ~~~~rigv~IC~D~~fpe~~r~~~~~Gadlil~ps~~~~~---~------~~~~~~~~~~~rA~en~~~vv~~n~~g~~~ 297 (364)
++++|||++||||.+|||++|.++.+|||+|++|+++... . ...+|....++||+||++||+.+|++|..
T Consensus 161 ~~~~rig~~IC~D~~fpe~~r~~a~~Ga~lll~~~~~~~~~~~~~~~~~~~~~~~~~~~~arA~en~~~vv~~n~~G~~- 239 (302)
T cd07569 161 VPGGIMGMCICNDRRWPETWRVMGLQGVELVLLGYNTPTHNPPAPEHDHLRLFHNLLSMQAGAYQNGTWVVAAAKAGME- 239 (302)
T ss_pred cCCceEEEEEeeccccchHHHHHHHCCCcEEEeecCCcccCCCccccchhhHHHHHHHHhhhhhcccceEEEeeccccC-
Confidence 9999999999999999999999999999999998664221 0 12357777899999999999999999865
Q ss_pred CCeeeeeEeEEECCCCCEeEeCC-CCCcEEEEEEchhhHHHHHhc-CCCccccccccchhhh
Q 017888 298 AGYVAWGHSTLVGPFGEVLATTE-HAEDIIIAEIDYSILELRRTS-LPLSKQRRGDLYQLVD 357 (364)
Q Consensus 298 ~~~~~~G~S~Ii~p~G~il~~~~-~~e~vl~~~ldl~~~~~~r~~-~~~~~~~r~~ly~~~~ 357 (364)
++..+.|+|.|++|+|+++++++ ++++++++++|++.++..|.. +|++.+|||++|..+.
T Consensus 240 ~~~~~~G~S~ii~p~G~vla~~~~~~e~~~~a~id~~~~~~~r~~~~~~~~~~r~~~y~~~~ 301 (302)
T cd07569 240 DGCDLIGGSCIVAPTGEIVAQATTLEDEVIVADCDLDLCREGRETVFNFARHRRPEHYGLIA 301 (302)
T ss_pred CCceEecceEEECCCCCEEEecCCCCCcEEEEEecHHHhhhcccccCcchhhcCHHHHhhhh
Confidence 46789999999999999999986 579999999999999999985 8999999999998654
No 18
>cd07585 nitrilase_7 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=100.00 E-value=6.2e-47 Score=353.03 Aligned_cols=254 Identities=35% Similarity=0.535 Sum_probs=223.1
Q ss_pred EEEEEecccc-cCHHHHHHHHHHHHHHHHHCCCcEEEcCCCCCCCCCCCCccchhhhhccCCCCchHHHHHHHHHHHcCc
Q 017888 84 KVGLCQLSVT-ADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKI 162 (364)
Q Consensus 84 kIA~vQ~~v~-~d~~~n~~~i~~~i~~A~~~gadLvVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~~~i 162 (364)
|||++|+++. +|++.|++++.+++++|+++|+|||||||++++||...+.....+ ....++.++.++++|+++++
T Consensus 1 ~ia~~Q~~~~~~~~~~n~~~i~~~i~~a~~~gadliv~PE~~l~g~~~~~~~~~~~----~~~~~~~~~~l~~~a~~~~~ 76 (261)
T cd07585 1 RIALVQFEARVGDKARNLAVIARWTRKAAAQGAELVCFPEMCITGYTHVRALSREA----EVPDGPSTQALSDLARRYGL 76 (261)
T ss_pred CEEEEEeecCCCCHHHHHHHHHHHHHHHHHcCCCEEEecccccccccCCcccchhc----ccCCChHHHHHHHHHHHcCc
Confidence 6999999986 899999999999999999999999999999999998754322111 11235688999999999999
Q ss_pred EEEEeeeeeecCCeeEEEEEEEcCCCcEEEEeeccccCCCCCCCcccccccccccCCCCCeEEecCCeeEEEEEeccCcc
Q 017888 163 TIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETPTIVDTDVGRIGIGICYDIRF 242 (364)
Q Consensus 163 ~Iv~Gs~~~~~~~~~yNsa~vi~~~G~i~~~y~K~~L~~~~~P~~~~~~E~~~~~~G~~~~vf~~~~~rigv~IC~D~~f 242 (364)
+|++| +++++++++||++++|+++|. +.+|+|.||++ .|..+|++|+.+.+|+++++|+|++||||.+|
T Consensus 77 ~i~~G-~~~~~~~~~yNs~~vi~~~g~-i~~y~K~~l~~---------~E~~~~~~G~~~~v~~~~~~rig~~IC~D~~~ 145 (261)
T cd07585 77 TILAG-LIEKAGDRPYNTYLVCLPDGL-VHRYRKLHLFR---------REHPYIAAGDEYPVFATPGVRFGILICYDNHF 145 (261)
T ss_pred EEEEe-ccccCCCceeEEEEEECCCCc-EeEEeeecCCc---------cccceEcCCCCCceEEcCCceEEEEEEcCCcC
Confidence 99999 567777899999999999997 58999999965 46778999999999999999999999999999
Q ss_pred cHHHHHHHhCCceEEEEeCCCCCCC---ChhHHHHHHHHHHHhcCcEEEEecCCCCCCCCeeeeeEeEEECCCCCEeEeC
Q 017888 243 QELAMIYGARGAHLICYPGAFNMTT---GPLHWELLQRARATDNQLYVATCSPARDEGAGYVAWGHSTLVGPFGEVLATT 319 (364)
Q Consensus 243 pe~~r~~~~~Gadlil~ps~~~~~~---~~~~~~~~~~~rA~en~~~vv~~n~~g~~~~~~~~~G~S~Ii~p~G~il~~~ 319 (364)
|++++.++++|||+|++|++++... ....|...+++||+||++|++++|..|..+ +..+.|.|+|++|+|++++++
T Consensus 146 pe~~r~l~~~gadlil~p~~~~~~~~~~~~~~~~~~~~~rA~e~~~~vv~~n~~g~~~-~~~~~G~S~i~~p~G~v~~~~ 224 (261)
T cd07585 146 PENVRATALLGAEILFAPHATPGTTSPKGREWWMRWLPARAYDNGVFVAACNGVGRDG-GEVFPGGAMILDPYGRVLAET 224 (261)
T ss_pred cHHHHHHHHCCCCEEEECCccCCCCCcchHHHHHHHhHHHHhhcCeEEEEecccccCC-CceecceEEEECCCCCEEecc
Confidence 9999999999999999999876543 234677788999999999999999888654 677899999999999999998
Q ss_pred C-CCCcEEEEEEchhhHHHHHhc--CCCccccccccc
Q 017888 320 E-HAEDIIIAEIDYSILELRRTS--LPLSKQRRGDLY 353 (364)
Q Consensus 320 ~-~~e~vl~~~ldl~~~~~~r~~--~~~~~~~r~~ly 353 (364)
+ ++++++++++|++.++..|.. .|++.+||+++|
T Consensus 225 ~~~~e~~l~~~id~~~~~~~r~~~~~~~~~~~~~~~~ 261 (261)
T cd07585 225 TSGGDGMVVADLDLDLINTVRGRRWISFLRARRPELY 261 (261)
T ss_pred CCCCCcEEEEEecHHHHHHhhccccCccccccCccCC
Confidence 5 789999999999999998876 689999999987
No 19
>cd07565 aliphatic_amidase aliphatic amidases (class 2 nitrilases). Aliphatic amidases catalyze the hydrolysis of short-chain aliphatic amides to form ammonia and the corresponding organic acid. This group includes Pseudomonas aeruginosa (Pa) AmiE, the amidase from Geobacillus pallidus RAPc8 (RAPc8 amidase), and Helicobacter pylori (Hp) AmiE and AmiF. PaAimE and HpAmiE hydrolyze various very short aliphatic amides, including propionamide, acetamide and acrylamide. HpAmiF is a formamidase which specifically hydrolyzes formamide. These proteins belong to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 2. Members of this superfamily generally form homomeric complexes, the basic
Probab=100.00 E-value=2e-46 Score=354.90 Aligned_cols=254 Identities=23% Similarity=0.317 Sum_probs=217.9
Q ss_pred eEEEEEeccc-----ccCHHHHHHHHHHHHHHHHH--CCCcEEEcCCCCCCCCCCCC--ccchhhhhccCCCCchHHHHH
Q 017888 83 FKVGLCQLSV-----TADKERNIAHARRAIEEAAE--KGAKLILLPEIWNSPYSHDS--FPVYAEDIDAGGDASPSTAML 153 (364)
Q Consensus 83 ~kIA~vQ~~v-----~~d~~~n~~~i~~~i~~A~~--~gadLvVfPE~~l~gy~~~~--~~~~~~~~~~~~~~~~~~~~l 153 (364)
++||++|+++ .+|+++|++++.+++++|++ +|+|||||||++++||..+. ..++++. ..++..+.+
T Consensus 1 ~~Ia~~Q~~~~~~~~~~d~~~Nl~~~~~~i~~A~~~~~gadLvvfPE~~ltGy~~~~~~~~~~a~~-----~~~~~~~~l 75 (291)
T cd07565 1 VGVAVVQYKVPVLHTKEEVLENAERIADMVEGTKRGLPGMDLIVFPEYSTQGLMYDKWTMDETACT-----VPGPETDIF 75 (291)
T ss_pred CeEEEEecccccccccccHHHHHHHHHHHHHHHHhhCCCCeEEEeCCcccccCCCCcchhhhhccC-----CCChhHHHH
Confidence 4899999997 37999999999999999987 59999999999999997532 2222222 235789999
Q ss_pred HHHHHHcCcEEEEeeeeeec-C--CeeEEEEEEEcCCCcEEEEeeccccCCCCCCCcccccccccccCCCC-CeEEecC-
Q 017888 154 SEVARLLKITIVGGSIPERS-G--DRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGET-PTIVDTD- 228 (364)
Q Consensus 154 ~~lA~~~~i~Iv~Gs~~~~~-~--~~~yNsa~vi~~~G~i~~~y~K~~L~~~~~P~~~~~~E~~~~~~G~~-~~vf~~~- 228 (364)
+++|++++++|++| +.++. + +++||++++|+++|+++.+|+|+||+. +...|.+|+. +.+|++.
T Consensus 76 ~~lA~~~~i~i~~g-~~e~~~~~~~~~yNsa~~i~~~G~i~~~YrK~hl~~----------~~e~~~~G~~~~~v~~~~~ 144 (291)
T cd07565 76 AEACKEAKVWGVFS-IMERNPDHGKNPYNTAIIIDDQGEIVLKYRKLHPWV----------PIEPWYPGDLGTPVCEGPK 144 (291)
T ss_pred HHHHHHCCeEEEEE-eeeecCCCCCceEEEEEEECCCCcEEEEEEecccCC----------CcccccCCCCCceeeECCC
Confidence 99999999999998 55654 3 689999999999999999999999853 1224789987 8899985
Q ss_pred CeeEEEEEeccCcccHHHHHHHhCCceEEEEeCCCCCCCChhHHHHHHHHHHHhcCcEEEEecCCCCCCCCeeeeeEeEE
Q 017888 229 VGRIGIGICYDIRFQELAMIYGARGAHLICYPGAFNMTTGPLHWELLQRARATDNQLYVATCSPARDEGAGYVAWGHSTL 308 (364)
Q Consensus 229 ~~rigv~IC~D~~fpe~~r~~~~~Gadlil~ps~~~~~~~~~~~~~~~~~rA~en~~~vv~~n~~g~~~~~~~~~G~S~I 308 (364)
++|||++||||.+|||++|.++++|||+|++|++|+... ..+|..+.++||+||++||+.||+.|.. ++..++|+|+|
T Consensus 145 g~riG~~ICyD~~fPe~~r~la~~GAdill~ps~~~~~~-~~~w~~~~~aRA~En~~~vv~aN~~G~~-~~~~~~G~S~i 222 (291)
T cd07565 145 GSKIALIICHDGMYPEIARECAYKGAELIIRIQGYMYPA-KDQWIITNKANAWCNLMYTASVNLAGFD-GVFSYFGESMI 222 (291)
T ss_pred CCEEEEEEEcCCCCcHHHHHHHHCCCeEEEECCcCCCCc-chHHHHHHHHHHHhcCcEEEEecccccC-CCceeeeeeEE
Confidence 669999999999999999999999999999999987643 4689999999999999999999999864 46789999999
Q ss_pred ECCCCCEeEeCC-CCCcEEEEEEchhhHHHHHhcCCCccccccccchhhhh
Q 017888 309 VGPFGEVLATTE-HAEDIIIAEIDYSILELRRTSLPLSKQRRGDLYQLVDI 358 (364)
Q Consensus 309 i~p~G~il~~~~-~~e~vl~~~ldl~~~~~~r~~~~~~~~~r~~ly~~~~~ 358 (364)
++|+|+++++++ ++++++++++|++.++..|..+|+ +.+||++-++
T Consensus 223 vdP~G~ila~~~~~~e~i~~adid~~~~~~~R~~~~~----~~~~~~~~~~ 269 (291)
T cd07565 223 VNFDGRTLGEGGREPDEIVTAELSPSLVRDARKNWGS----ENNLYKLGHR 269 (291)
T ss_pred ECCCCCEEEeCCCCCCcEEEEEEcHHHHHHHHhcCCC----CCcHHHhhhh
Confidence 999999999986 578999999999999999999988 3388887665
No 20
>cd07584 nitrilase_6 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=100.00 E-value=2.1e-46 Score=348.93 Aligned_cols=253 Identities=34% Similarity=0.556 Sum_probs=220.1
Q ss_pred EEEEEecccc-cCHHHHHHHHHHHHHHHHHCCCcEEEcCCCCCCCCCCCCccchhhhhccCCCCchHHHHHHHHHHHcCc
Q 017888 84 KVGLCQLSVT-ADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKI 162 (364)
Q Consensus 84 kIA~vQ~~v~-~d~~~n~~~i~~~i~~A~~~gadLvVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~~~i 162 (364)
|||++|+++. +|+++|++++++++++|+++|+|||||||++++||...++......+. .....+..+.++++|+++++
T Consensus 1 ria~~q~~~~~~d~~~n~~~~~~~i~~a~~~ga~liv~PE~~l~g~~~~~~~~~~~~~~-~~~~~~~~~~l~~~a~~~~i 79 (258)
T cd07584 1 KVALIQMDSVLGDVKANLKKAAELCKEAAAEGADLICFPELATTGYRPDLLGPKLWELS-EPIDGPTVRLFSELAKELGV 79 (258)
T ss_pred CEEEEEecCccCCHHHHHHHHHHHHHHHHHcCCCEEEcccccccCCCccccchhhHhhc-cCCCCcHHHHHHHHHHHcCe
Confidence 6999999975 899999999999999999999999999999999997654322111110 01224688999999999999
Q ss_pred EEEEeeeeeec--CCeeEEEEEEEcCCCcEEEEeeccccCCCCCCCcccccccccccCCCCCeEEecCCeeEEEEEeccC
Q 017888 163 TIVGGSIPERS--GDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETPTIVDTDVGRIGIGICYDI 240 (364)
Q Consensus 163 ~Iv~Gs~~~~~--~~~~yNsa~vi~~~G~i~~~y~K~~L~~~~~P~~~~~~E~~~~~~G~~~~vf~~~~~rigv~IC~D~ 240 (364)
+|++| .++.. ++++||++++|+|+|+++..|+|.||++ .|..+|++|+.+.+|+++++|+|++||||+
T Consensus 80 ~i~~G-~~~~~~~~~~~~Ns~~~i~~~G~i~~~y~K~~l~~---------~e~~~~~~G~~~~~~~~~~~~~g~~IC~D~ 149 (258)
T cd07584 80 YIVCG-FVEKGGVPGKVYNSAVVIDPEGESLGVYRKIHLWG---------LEKQYFREGEQYPVFDTPFGKIGVMICYDM 149 (258)
T ss_pred EEEEe-ehcccCCCCceEEEEEEECCCCCEEeEEEeecCCc---------hhhhhccCCCCCeeEEcCCceEEEEEEcCc
Confidence 99999 45543 2689999999999999999999999964 466789999999999999999999999999
Q ss_pred cccHHHHHHHhCCceEEEEeCCCCCCCChhHHHHHHHHHHHhcCcEEEEecCCCCCCCCeeeeeEeEEECCCCCEeEeCC
Q 017888 241 RFQELAMIYGARGAHLICYPGAFNMTTGPLHWELLQRARATDNQLYVATCSPARDEGAGYVAWGHSTLVGPFGEVLATTE 320 (364)
Q Consensus 241 ~fpe~~r~~~~~Gadlil~ps~~~~~~~~~~~~~~~~~rA~en~~~vv~~n~~g~~~~~~~~~G~S~Ii~p~G~il~~~~ 320 (364)
+||++.+.++++|+|++++|++|... ...+|+...++||+||++||+.+|..|.. ++..+.|+|+|++|+|+++++++
T Consensus 150 ~fpe~~r~~~~~gadll~~ps~~~~~-~~~~~~~~~~~rA~En~~~vv~~n~~g~~-~~~~~~G~S~ii~p~G~il~~~~ 227 (258)
T cd07584 150 GFPEVARILTLKGAEVIFCPSAWREQ-DADIWDINLPARALENTVFVAAVNRVGNE-GDLVLFGKSKILNPRGQVLAEAS 227 (258)
T ss_pred cChHHHHHHHHCCCcEEEECCccCCC-CchHHHHHHHHHHHhCCcEEEEECccccC-CCceecceeEEECCCCceeeecC
Confidence 99999999999999999999998764 45688888999999999999999887654 45678999999999999999986
Q ss_pred -CCCcEEEEEEchhhHHHHHhcCCCccccc
Q 017888 321 -HAEDIIIAEIDYSILELRRTSLPLSKQRR 349 (364)
Q Consensus 321 -~~e~vl~~~ldl~~~~~~r~~~~~~~~~r 349 (364)
++++++++++|++.++..|...|++.++|
T Consensus 228 ~~~~~~~~~~id~~~~~~~r~~~p~~~~~~ 257 (258)
T cd07584 228 EEAEEILYAEIDLDAIADYRMTLPYLKDRK 257 (258)
T ss_pred CCCCcEEEEEeCHHHHHHHHhhCchhhhcC
Confidence 67999999999999999999999999987
No 21
>cd07581 nitrilase_3 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=100.00 E-value=2e-46 Score=348.35 Aligned_cols=249 Identities=39% Similarity=0.618 Sum_probs=219.7
Q ss_pred EEEEecccccCHHHHHHHHHHHHHHHHHCCCcEEEcCCCCCCCCCCCCc--cchhhhhccCCCCchHHHHHHHHHHHcCc
Q 017888 85 VGLCQLSVTADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSF--PVYAEDIDAGGDASPSTAMLSEVARLLKI 162 (364)
Q Consensus 85 IA~vQ~~v~~d~~~n~~~i~~~i~~A~~~gadLvVfPE~~l~gy~~~~~--~~~~~~~~~~~~~~~~~~~l~~lA~~~~i 162 (364)
||++|++..+|+++|++++.+.+++|+++|+|||||||++++||...+. ....+.+ .+++++.++++|+++++
T Consensus 1 ia~~Q~~~~~d~~~n~~~~~~~i~~a~~~g~dlivfPE~~l~g~~~~~~~~~~~~~~~-----~~~~~~~l~~~a~~~~i 75 (255)
T cd07581 1 VALAQFASSGDKEENLEKVRRLLAEAAAAGADLVVFPEYTMARFGDGLDDYARVAEPL-----DGPFVSALARLARELGI 75 (255)
T ss_pred CEEEEeeCCCCHHHHHHHHHHHHHHHHHcCCCEEECcchhcCCCCcchhhHHhhhccC-----CCHHHHHHHHHHHHcCe
Confidence 6899999889999999999999999999999999999999999976542 1222221 24688999999999999
Q ss_pred EEEEeeeeeecC-CeeEEEEEEEcCCCcEEEEeeccccCCCCCCCcccccccccccCCCC--CeEEecCCeeEEEEEecc
Q 017888 163 TIVGGSIPERSG-DRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGET--PTIVDTDVGRIGIGICYD 239 (364)
Q Consensus 163 ~Iv~Gs~~~~~~-~~~yNsa~vi~~~G~i~~~y~K~~L~~~~~P~~~~~~E~~~~~~G~~--~~vf~~~~~rigv~IC~D 239 (364)
+|++| ++++.+ +++||++++|+++|+++.+|+|.||++. ..+.|..+|.+|+. ..+++++++|+|++||||
T Consensus 76 ~iv~G-~~~~~~~~~~yNs~~~i~~~G~i~~~y~K~~L~~~-----~~~~e~~~~~~G~~~~~~~~~~~~~kig~~IC~D 149 (255)
T cd07581 76 TVVAG-MFEPAGDGRVYNTLVVVGPDGEIIAVYRKIHLYDA-----FGFRESDTVAPGDELPPVVFVVGGVKVGLATCYD 149 (255)
T ss_pred EEEEE-eeeeCCCCcEEEeEEEECCCCcEEEEEeeeccCCC-----CCcCcccccCCCCCCCceEEecCCceEEEEEEec
Confidence 99999 556654 4899999999999999999999999652 13568889999998 788999999999999999
Q ss_pred CcccHHHHHHHhCCceEEEEeCCCCCCC-ChhHHHHHHHHHHHhcCcEEEEecCCCCCCCCeeeeeEeEEECCCCCEeEe
Q 017888 240 IRFQELAMIYGARGAHLICYPGAFNMTT-GPLHWELLQRARATDNQLYVATCSPARDEGAGYVAWGHSTLVGPFGEVLAT 318 (364)
Q Consensus 240 ~~fpe~~r~~~~~Gadlil~ps~~~~~~-~~~~~~~~~~~rA~en~~~vv~~n~~g~~~~~~~~~G~S~Ii~p~G~il~~ 318 (364)
.+||++.+.++++|||+|++|++|.... ...+|..+.++||+||++|++.+|.+|. .+.|.|+|++|+|+++++
T Consensus 150 ~~~pe~~~~~~~~ga~lil~ps~~~~~~~~~~~~~~~~~~rA~en~~~vv~~n~~g~-----~~~G~S~i~~p~G~i~~~ 224 (255)
T cd07581 150 LRFPELARALALAGADVIVVPAAWVAGPGKEEHWETLLRARALENTVYVAAAGQAGP-----RGIGRSMVVDPLGVVLAD 224 (255)
T ss_pred ccCHHHHHHHHHCCCcEEEECCcccCCCCchHHHHHHHHHHHHHhCCEEEEEcCcCC-----CcccceEEECCCcceeee
Confidence 9999999999999999999999987543 3568888999999999999999998864 578999999999999999
Q ss_pred CCCCCcEEEEEEchhhHHHHHhcCCCccccc
Q 017888 319 TEHAEDIIIAEIDYSILELRRTSLPLSKQRR 349 (364)
Q Consensus 319 ~~~~e~vl~~~ldl~~~~~~r~~~~~~~~~r 349 (364)
.+.+++++++++|++.++..|..+|++.|||
T Consensus 225 ~~~~~~~l~~~id~~~~~~~r~~~~~~~~~~ 255 (255)
T cd07581 225 LGEREGLLVADIDPERVEEAREALPVLENRR 255 (255)
T ss_pred cCCCCcEEEEEeCHHHHHHHHHhCcchhcCC
Confidence 8777999999999999999999999999987
No 22
>cd07574 nitrilase_Rim1_like Uncharacterized subgroup of the nitrilase superfamily; some members of this subgroup have an N-terminal RimI domain (class 12 nitrilases). Some members of this subgroup are implicated in post-translational modification, as they contain an N-terminal GCN5-related N-acetyltransferase (GNAT) protein RimI family domain. The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 12. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=100.00 E-value=1.4e-46 Score=354.26 Aligned_cols=260 Identities=30% Similarity=0.475 Sum_probs=220.7
Q ss_pred eEEEEEecccc--cCHHHHHHHHHHHHHHHHHCCCcEEEcCCCCCCCCC---CCCcc---chhhhhccCCCCchHHHHHH
Q 017888 83 FKVGLCQLSVT--ADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYS---HDSFP---VYAEDIDAGGDASPSTAMLS 154 (364)
Q Consensus 83 ~kIA~vQ~~v~--~d~~~n~~~i~~~i~~A~~~gadLvVfPE~~l~gy~---~~~~~---~~~~~~~~~~~~~~~~~~l~ 154 (364)
||||++|+++. .|+++|++++++++++|+++|+|||||||++++||. ..+.. ....... ...+++.+.++
T Consensus 1 m~va~~Q~~~~~~~~~~~n~~~i~~~i~~A~~~gadlivfPE~~~~g~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~ 78 (280)
T cd07574 1 VRVAAAQYPLRRYASFEEFAAKVEYWVAEAAGYGADLLVFPEYFTMELLSLLPEAIDGLDEAIRALA--ALTPDYVALFS 78 (280)
T ss_pred CeeEEEEccCcCCCCHHHHHHHHHHHHHHHHHcCCCEEECchHhHHHHHHhCCcccccHHHHHHHHH--HHHHHHHHHHH
Confidence 79999999975 799999999999999999999999999999998742 22211 1111110 01246889999
Q ss_pred HHHHHcCcEEEEeeeeeecCCeeEEEEEEEcCCCcEEEEeeccccCCCCCCCcccccccccccCCCCCeEEecCCeeEEE
Q 017888 155 EVARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETPTIVDTDVGRIGI 234 (364)
Q Consensus 155 ~lA~~~~i~Iv~Gs~~~~~~~~~yNsa~vi~~~G~i~~~y~K~~L~~~~~P~~~~~~E~~~~~~G~~~~vf~~~~~rigv 234 (364)
++|++++++|++|+++++.++++||++++++++|++ .+|+|.||++++ .|..+|.+|+++.+|+++++|+|+
T Consensus 79 ~~a~~~~i~iv~G~~~~~~~~~~yNs~~~i~~~G~v-~~y~K~~l~~~e-------~~~~~~~~G~~~~v~~~~~~~ig~ 150 (280)
T cd07574 79 ELARKYGINIIAGSMPVREDGRLYNRAYLFGPDGTI-GHQDKLHMTPFE-------REEWGISGGDKLKVFDTDLGKIGI 150 (280)
T ss_pred HHHHHhCCEEEecceEEcCCCCeEEEEEEECCCCCE-EEEeeeccCchh-------hhcccccCCCCceEEecCCccEEE
Confidence 999999999999976666788999999999999987 999999997642 344568999999999999999999
Q ss_pred EEeccCcccHHHHHHHhCCceEEEEeCCCCCCCChhHHHHHHHHHHHhcCcEEEEecCCCCCC---CCeeeeeEeEEECC
Q 017888 235 GICYDIRFQELAMIYGARGAHLICYPGAFNMTTGPLHWELLQRARATDNQLYVATCSPARDEG---AGYVAWGHSTLVGP 311 (364)
Q Consensus 235 ~IC~D~~fpe~~r~~~~~Gadlil~ps~~~~~~~~~~~~~~~~~rA~en~~~vv~~n~~g~~~---~~~~~~G~S~Ii~p 311 (364)
+||||++||+++|.++++|||+|++|++++...+..+|...+++||+||++||+++|++|... .+..++|+|+|++|
T Consensus 151 ~IC~D~~fpe~~r~l~~~ga~ii~~ps~~~~~~~~~~~~~~~~arA~en~~~vv~an~~G~~~~~~~~~~~~G~S~i~~P 230 (280)
T cd07574 151 LICYDSEFPELARALAEAGADLLLVPSCTDTRAGYWRVRIGAQARALENQCYVVQSGTVGNAPWSPAVDVNYGQAAVYTP 230 (280)
T ss_pred EEecccccHHHHHHHHHcCCCEEEECCcCCccccHHHHHHHHHHHHHhhCceEEEeCCCCCCCCccccccccccceeecC
Confidence 999999999999999999999999999887655556777778999999999999999988654 35778999999999
Q ss_pred C------CCEeEeCC-CCCcEEEEEEchhhHHHHHhcCCC--cccccccc
Q 017888 312 F------GEVLATTE-HAEDIIIAEIDYSILELRRTSLPL--SKQRRGDL 352 (364)
Q Consensus 312 ~------G~il~~~~-~~e~vl~~~ldl~~~~~~r~~~~~--~~~~r~~l 352 (364)
. |++++++. ++|+++++++|++.++..|..+|+ ++++|+||
T Consensus 231 ~~~~~~~g~~l~~~~~~~e~~~~a~iD~~~~~~~R~~~~~~~~~~~~~~~ 280 (280)
T cd07574 231 CDFGFPEDGILAEGEPNTEGWLIADLDLEALRRLREEGSVRNLRDWREDL 280 (280)
T ss_pred CCCCCCCCCeEeecCCCCCceEEEecCHHHHHHHhhcCCccCcccCcccC
Confidence 6 88998875 679999999999999999999764 78899876
No 23
>cd07577 Ph0642_like Pyrococcus horikoshii Ph0642 and related proteins, members of the nitrilase superfamily (putative class 13 nitrilases). Uncharacterized subgroup of the nitrilase superfamily. This superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. Pyrococcus horikoshii Ph0642 is a hypothetical protein belonging to this subgroup. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). This subgroup was classified as belonging to class 13, which represents proteins that at the time were difficult to place in a distinct similarity group. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=100.00 E-value=1.7e-46 Score=349.86 Aligned_cols=251 Identities=32% Similarity=0.492 Sum_probs=216.6
Q ss_pred EEEEEecccc-cCHHHHHHHHHHHHHHHHHCCCcEEEcCCCCCCCCCCCCccchhhhhccCCCCchHHHHHHHHHHHcCc
Q 017888 84 KVGLCQLSVT-ADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKI 162 (364)
Q Consensus 84 kIA~vQ~~v~-~d~~~n~~~i~~~i~~A~~~gadLvVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~~~i 162 (364)
|||++|+++. +|++.|++++.+++++|. +|||||||++++||.........+... ....++.++.++++|+++++
T Consensus 1 kia~~Q~~~~~~d~~~N~~~~~~~i~~a~---adlvvfPE~~l~gy~~~~~~~~~~~~~-~~~~~~~~~~l~~~a~~~~i 76 (259)
T cd07577 1 KVGYVQFNPKFGEVEKNLKKVESLIKGVE---ADLIVLPELFNTGYAFTSKEEVASLAE-SIPDGPTTRFLQELARETGA 76 (259)
T ss_pred CEEEEEccCccCCHHHHHHHHHHHHHHhC---CCEEEcccccccCCCcCCHHHHHHhhc-ccCCChHHHHHHHHHHHhCc
Confidence 6999999976 899999999999998884 999999999999997643221111110 01135689999999999999
Q ss_pred EEEEeeeeeecCCeeEEEEEEEcCCCcEEEEeeccccCCCCCCCcccccccccccCCC-CCeEEecCCeeEEEEEeccCc
Q 017888 163 TIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGE-TPTIVDTDVGRIGIGICYDIR 241 (364)
Q Consensus 163 ~Iv~Gs~~~~~~~~~yNsa~vi~~~G~i~~~y~K~~L~~~~~P~~~~~~E~~~~~~G~-~~~vf~~~~~rigv~IC~D~~ 241 (364)
+|++| ++++.++++||++++|+++| ++++|+|+||++ .|..+|++|+ .+.+|+++++|+|++||||.+
T Consensus 77 ~ii~G-~~~~~~~~~yNs~~vi~~~G-i~~~y~K~~l~~---------~e~~~~~~G~~~~~~~~~~~~~ig~~IC~D~~ 145 (259)
T cd07577 77 YIVAG-LPERDGDKFYNSAVVVGPEG-YIGIYRKTHLFY---------EEKLFFEPGDTGFRVFDIGDIRIGVMICFDWY 145 (259)
T ss_pred EEEec-ceeccCCceEEEEEEECCCc-cEeeEeeccCCh---------hhhccccCCCCCCceEEeCCcEEEEEEEcCcc
Confidence 99999 67777889999999999999 899999999964 5778899999 799999999999999999999
Q ss_pred ccHHHHHHHhCCceEEEEeCCCCCCCChhHHHHHHHHHHHhcCcEEEEecCCCCCC---CCeeeeeEeEEECCCCCEeEe
Q 017888 242 FQELAMIYGARGAHLICYPGAFNMTTGPLHWELLQRARATDNQLYVATCSPARDEG---AGYVAWGHSTLVGPFGEVLAT 318 (364)
Q Consensus 242 fpe~~r~~~~~Gadlil~ps~~~~~~~~~~~~~~~~~rA~en~~~vv~~n~~g~~~---~~~~~~G~S~Ii~p~G~il~~ 318 (364)
|||+++.++++|||+|++|++|.. .+|..++++||+||++|++++|++|... ++..+.|.|+|++|+|+++++
T Consensus 146 fpe~~r~~~~~Gadli~~ps~~~~----~~~~~~~~~rA~en~~~vv~~n~~G~~~~~~~~~~~~G~S~i~~p~G~i~~~ 221 (259)
T cd07577 146 FPEAARTLALKGADIIAHPANLVL----PYCPKAMPIRALENRVFTITANRIGTEERGGETLRFIGKSQITSPKGEVLAR 221 (259)
T ss_pred cchHHHHHHHcCCCEEEECCccCC----chhhhhhhHhhhhcCceEEEEecCcccCCCCCCceEeeeeEEECCCCCEEee
Confidence 999999999999999999999753 2677788999999999999999988652 467789999999999999999
Q ss_pred CC-CCCcEEEEEEchhhHHHHH--hcCCCccccccccc
Q 017888 319 TE-HAEDIIIAEIDYSILELRR--TSLPLSKQRRGDLY 353 (364)
Q Consensus 319 ~~-~~e~vl~~~ldl~~~~~~r--~~~~~~~~~r~~ly 353 (364)
++ ++++++++++|++.++.+| ..+|++.+|||++|
T Consensus 222 ~~~~~e~~~~~~id~~~~~~~~~~~~~~~~~~~r~~~~ 259 (259)
T cd07577 222 APEDGEEVLVAEIDPRLARDKRINEENDIFKDRRPEFY 259 (259)
T ss_pred cCCCCCcEEEEEEchHHhhcccccccCchhhhcCcccC
Confidence 86 6889999999999988644 77899999999987
No 24
>COG0388 Predicted amidohydrolase [General function prediction only]
Probab=100.00 E-value=9.5e-46 Score=347.63 Aligned_cols=262 Identities=37% Similarity=0.629 Sum_probs=227.4
Q ss_pred ceEEEEEecccc-cCHHHHHHHHHHHHHHHHHCCCcEEEcCCCCCCCCCCCCccchhhhhccCCCCchHHHHHHHHHHHc
Q 017888 82 KFKVGLCQLSVT-ADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLL 160 (364)
Q Consensus 82 ~~kIA~vQ~~v~-~d~~~n~~~i~~~i~~A~~~gadLvVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~~ 160 (364)
.||||++|+++. .|.+.|++++.+++++|+++|||||||||++++||.+.+ ..+.+... ....++..+.++++|+++
T Consensus 2 ~~rvA~~Q~~~~~~d~~~N~~~~~~~i~~a~~~ga~LvvfPEl~~tgy~~~~-~~~~~~~~-~~~~~~~~~~l~~~a~~~ 79 (274)
T COG0388 2 MMRVAAAQMAPKAGDPAENLARILRLIREAAARGADLVVFPELFLTGYPCED-DLFLEEAA-AEAGEETLEFLAALAEEG 79 (274)
T ss_pred ceEEEEEEecCCCCCHHHHHHHHHHHHHHHHHcCCCEEECCcccccCCCccc-HHHHHhhh-hccCChHHHHHHHHHHhC
Confidence 489999999974 999999999999999999999999999999999998875 11111110 112357899999999988
Q ss_pred CcEEEEeeeeeecCCeeEEEEEEEcCCCcEEEEeeccccCCCCCCCcccccccccccCCCCC-eEEecCCeeEEEEEecc
Q 017888 161 KITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETP-TIVDTDVGRIGIGICYD 239 (364)
Q Consensus 161 ~i~Iv~Gs~~~~~~~~~yNsa~vi~~~G~i~~~y~K~~L~~~~~P~~~~~~E~~~~~~G~~~-~vf~~~~~rigv~IC~D 239 (364)
+++|++|+.+++. ..||++++++++|+++++|+|+||++. .+.|+.+|.+|+.. .+|+++++|+|++||||
T Consensus 80 ~~~ivg~~~~~~~--~~~~~~~~i~~~G~ii~~y~K~hl~~~------~~~e~~~~~~G~~~~~v~~~~~~kig~~IC~D 151 (274)
T COG0388 80 GVIIVGGPLPERE--KLYNNAALIDPDGEILGKYRKLHLFDA------FYEERRFFTPGDEGVVVFETDGGKIGLLICYD 151 (274)
T ss_pred CeEEEEeeeeccc--cceeeEEEEcCCCcEEeEEeeecCCCC------ccchhhhccCCCccceeEEeCCceEEEEEEee
Confidence 8888888665544 889999999999999999999999752 35789999999988 59999999999999999
Q ss_pred CcccHHHHHH-HhCCceEEEEeCCCCCCCChhHHHHHHHHHHHhcCcEEEEecCCCCCCCCeeeeeEeEEECCCCCEeEe
Q 017888 240 IRFQELAMIY-GARGAHLICYPGAFNMTTGPLHWELLQRARATDNQLYVATCSPARDEGAGYVAWGHSTLVGPFGEVLAT 318 (364)
Q Consensus 240 ~~fpe~~r~~-~~~Gadlil~ps~~~~~~~~~~~~~~~~~rA~en~~~vv~~n~~g~~~~~~~~~G~S~Ii~p~G~il~~ 318 (364)
++|||+.+.+ +..||++|++|++|....+..+|..+.++||+||++||+.+|..|..+.+..++|+|+|++|+|+++++
T Consensus 152 ~~fPe~~~~~~a~~Gaeii~~p~a~~~~~~~~~w~~l~~arA~en~~~vv~~n~~g~~~~~~~~~G~S~i~~p~G~v~~~ 231 (274)
T COG0388 152 LRFPELARRLLALGGAELLLVPAAWPAERGLDHWEVLLRARAIENQVYVLAANRAGFDGAGLEFCGHSAIIDPDGEVLAE 231 (274)
T ss_pred ccCHHHHHHHHHhcCCeEEEEcCCCCCcccHHHHHHHHHHHhhhcCceEEEecccCCCCCccEEecceEEECCCccEEee
Confidence 9999988887 788999999999999887778999999999999999999999998766668899999999999999999
Q ss_pred CCC-CCcEEEEEEchhhHHHHHhcCCCccccccccc
Q 017888 319 TEH-AEDIIIAEIDYSILELRRTSLPLSKQRRGDLY 353 (364)
Q Consensus 319 ~~~-~e~vl~~~ldl~~~~~~r~~~~~~~~~r~~ly 353 (364)
+.. +|+++++++|++.++..|..+|...+++...+
T Consensus 232 ~~~~~e~~~~~~id~~~~~~~r~~~~~~~~~~~~~~ 267 (274)
T COG0388 232 AGEEEEGVLLADIDLAELAEVRRKIPVLKDRRRFDL 267 (274)
T ss_pred cCCCCCcEEEEEECHHHHHHHHhhCcchhhcccchh
Confidence 875 79999999999999999999998776544443
No 25
>cd07578 nitrilase_1_R1 First nitrilase domain of an uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). Members of this subgroup have two nitrilase domains. This is the first of those two domains. The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=100.00 E-value=4.6e-46 Score=346.79 Aligned_cols=252 Identities=31% Similarity=0.456 Sum_probs=215.5
Q ss_pred eEEEEEecccc-cCHHHHHHHHHHHHHHHHHCCCcEEEcCCCCCCCCCCCCccchhhhhccCCCCchHHHHHHHHHHHcC
Q 017888 83 FKVGLCQLSVT-ADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLK 161 (364)
Q Consensus 83 ~kIA~vQ~~v~-~d~~~n~~~i~~~i~~A~~~gadLvVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~~~ 161 (364)
+|||++|++.. +|++.|++++.+++++|+++|+|||||||++++||...+.......... ..++..+.++++|++++
T Consensus 1 ~ria~~Q~~~~~~d~~~n~~~~~~~i~~A~~~gadlivfPE~~l~gy~~~~~~~~~~~~~~--~~~~~~~~l~~~a~~~~ 78 (258)
T cd07578 1 YKAAAIQFEPEMGEKERNIERLLALCEEAARAGARLIVTPEMATTGYCWYDRAEIAPFVEP--IPGPTTARFAELAREHD 78 (258)
T ss_pred CeEEEEEecCccccHHHHHHHHHHHHHHHHhCCCCEEEcccccccCCCcCCHHHhhhhccc--CCCHHHHHHHHHHHHcC
Confidence 58999999976 8999999999999999999999999999999999986554322221111 12468899999999999
Q ss_pred cEEEEeeeeeec--CCeeEEEEEEEcCCCcEEEEeeccccCCCCCCCcccccccccccCCC-CCeEEecCCeeEEEEEec
Q 017888 162 ITIVGGSIPERS--GDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGE-TPTIVDTDVGRIGIGICY 238 (364)
Q Consensus 162 i~Iv~Gs~~~~~--~~~~yNsa~vi~~~G~i~~~y~K~~L~~~~~P~~~~~~E~~~~~~G~-~~~vf~~~~~rigv~IC~ 238 (364)
++|++| ++++. ++++||++++|+++| ++..|+|.|++. .|..+|++|+ ...+|+++++|+|++|||
T Consensus 79 i~ii~G-~~~~~~~~~~~yNs~~vi~~~g-~~~~y~K~h~~~---------~e~~~~~~g~~~~~v~~~~~~rig~~IC~ 147 (258)
T cd07578 79 CYIVVG-LPEVDSRSGIYYNSAVLIGPSG-VIGRHRKTHPYI---------SEPKWAADGDLGHQVFDTEIGRIALLICM 147 (258)
T ss_pred cEEEEe-cceecCCCCCeeEEEEEECCCC-cEEeEeeecCCc---------ccccccCCCCCCceEEECCCccEEEEEee
Confidence 999999 45553 468999999999998 789999999853 4677899998 578999999999999999
Q ss_pred cCcccHHHHHHHhCCceEEEEeCCCCCCCCh-hHHHHHHHHHHHhcCcEEEEecCCCCCCCCeeeeeEeEEECCCCCEeE
Q 017888 239 DIRFQELAMIYGARGAHLICYPGAFNMTTGP-LHWELLQRARATDNQLYVATCSPARDEGAGYVAWGHSTLVGPFGEVLA 317 (364)
Q Consensus 239 D~~fpe~~r~~~~~Gadlil~ps~~~~~~~~-~~~~~~~~~rA~en~~~vv~~n~~g~~~~~~~~~G~S~Ii~p~G~il~ 317 (364)
|.+|||++|.++++||+++++|++|...... .+| .+||+||++|++.+|+.|.. ++..+.|+|++++|+|++++
T Consensus 148 D~~fpe~~r~~~~~ga~ll~~ps~~~~~~~~~~~~----~~rA~en~~~vv~an~~G~~-~~~~~~G~S~ii~p~G~il~ 222 (258)
T cd07578 148 DIHFFETARLLALGGADVICHISNWLAERTPAPYW----INRAFENGCYLIESNRWGLE-RGVQFSGGSCIIEPDGTIQA 222 (258)
T ss_pred CCCchHHHHHHHHcCCCEEEEcCCCCCCCCcchHH----HHhhhcCCeEEEEecceecc-CCcceeeEEEEECCCCcEee
Confidence 9999999999999999999999998654332 233 58999999999999998764 46789999999999999999
Q ss_pred eCCCCCcEEEEEEchhhHHHHHhc-CCCcccccccc
Q 017888 318 TTEHAEDIIIAEIDYSILELRRTS-LPLSKQRRGDL 352 (364)
Q Consensus 318 ~~~~~e~vl~~~ldl~~~~~~r~~-~~~~~~~r~~l 352 (364)
+.+.+++++++++|++.++.+|.. .|++.+|||++
T Consensus 223 ~~~~~e~~~~a~id~~~~~~~r~~~~~~~~~~~~~~ 258 (258)
T cd07578 223 SIDSGDGVALGEIDLDRARHRQFPGELVFTARRPEL 258 (258)
T ss_pred ccCCCCceEEEEecchHhhhhhcccchhhhhhccCC
Confidence 887778999999999999999875 79999999975
No 26
>cd07575 Xc-1258_like Xanthomonas campestris XC1258 and related proteins, members of the nitrilase superfamily (putative class 13 nitrilases). Uncharacterized subgroup belonging to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup either represents a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. XC1258 is a homotetramer.
Probab=100.00 E-value=1e-45 Score=343.32 Aligned_cols=249 Identities=29% Similarity=0.461 Sum_probs=219.3
Q ss_pred eEEEEEecccc-cCHHHHHHHHHHHHHHHHHCCCcEEEcCCCCCCCCCCCCccchhhhhccCCCCchHHHHHHHHHHHcC
Q 017888 83 FKVGLCQLSVT-ADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLK 161 (364)
Q Consensus 83 ~kIA~vQ~~v~-~d~~~n~~~i~~~i~~A~~~gadLvVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~~~ 161 (364)
||||++|+++. +|++.|++++.+++++|++ |+|||||||++++||...+. ..++. ..++.++.++++|++++
T Consensus 1 mkia~~Q~~~~~~d~~~N~~~~~~~i~~a~~-gadlvvfPE~~l~g~~~~~~-~~~~~-----~~~~~~~~l~~la~~~~ 73 (252)
T cd07575 1 LKIALIQTDLVWEDPEANLAHFEEKIEQLKE-KTDLIVLPEMFTTGFSMNAE-ALAEP-----MNGPTLQWMKAQAKKKG 73 (252)
T ss_pred CEEEEEEeecCcCCHHHHHHHHHHHHHHhhc-CCCEEEeCCcCcCCCCccHH-Hhhcc-----cCChHHHHHHHHHHHCC
Confidence 79999999987 8999999999999999997 99999999999999975432 12222 13568999999999999
Q ss_pred cEEEEeeeeeecCCeeEEEEEEEcCCCcEEEEeeccccCCCCCCCcccccccccccCCCCCeEEecCCeeEEEEEeccCc
Q 017888 162 ITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETPTIVDTDVGRIGIGICYDIR 241 (364)
Q Consensus 162 i~Iv~Gs~~~~~~~~~yNsa~vi~~~G~i~~~y~K~~L~~~~~P~~~~~~E~~~~~~G~~~~vf~~~~~rigv~IC~D~~ 241 (364)
+.|++| +++++++++||++++++++|++. .|+|+||+++ +.|..+|++|++..+|+++++|+|++||||.+
T Consensus 74 i~i~~~-~~~~~~~~~yNs~~~i~~~G~i~-~y~K~~l~~~-------~~e~~~~~~G~~~~~~~~~~~~ig~~IC~D~~ 144 (252)
T cd07575 74 AAITGS-LIIKEGGKYYNRLYFVTPDGEVY-HYDKRHLFRM-------AGEHKVYTAGNERVIVEYKGWKILLQVCYDLR 144 (252)
T ss_pred eEEEEE-EEEccCCceEEEEEEECCCCCEE-EEeeeecCCC-------CCccceecCCCCceEEEECCEEEEEEEEeccC
Confidence 988876 67777889999999999999864 9999999763 25778899999999999999999999999999
Q ss_pred ccHHHHHHHhCCceEEEEeCCCCCCCChhHHHHHHHHHHHhcCcEEEEecCCCCCCCCeeeeeEeEEECCCCCEeEeCCC
Q 017888 242 FQELAMIYGARGAHLICYPGAFNMTTGPLHWELLQRARATDNQLYVATCSPARDEGAGYVAWGHSTLVGPFGEVLATTEH 321 (364)
Q Consensus 242 fpe~~r~~~~~Gadlil~ps~~~~~~~~~~~~~~~~~rA~en~~~vv~~n~~g~~~~~~~~~G~S~Ii~p~G~il~~~~~ 321 (364)
|||+++.++. ||+|++|++|+.. ...+|..+.++||+||++||+.||..|..+.+..+.|.|+|++|+|+++++++.
T Consensus 145 ~pe~~r~~~~--a~lil~~s~~~~~-~~~~~~~~~~arA~en~~~vv~~n~~G~~~~~~~~~G~S~i~~p~G~~l~~~~~ 221 (252)
T cd07575 145 FPVWSRNTND--YDLLLYVANWPAP-RRAAWDTLLKARAIENQAYVIGVNRVGTDGNGLEYSGDSAVIDPLGEPLAEAEE 221 (252)
T ss_pred ChHHHHhhcC--CCEEEEeCCCCCC-chHHHHHHhHHHHhhccceEEEecccccCCCCceEcceeEEECCCCceeeEcCC
Confidence 9999998765 9999999998654 346888888999999999999999998877678899999999999999999864
Q ss_pred CCcEEEEEEchhhHHHHHhcCCCcccccc
Q 017888 322 AEDIIIAEIDYSILELRRTSLPLSKQRRG 350 (364)
Q Consensus 322 ~e~vl~~~ldl~~~~~~r~~~~~~~~~r~ 350 (364)
.++++++++|++.++..|..+|++++||.
T Consensus 222 ~e~~i~~~id~~~~~~~r~~~~~~~~~~~ 250 (252)
T cd07575 222 DEGVLTATLDKEALQEFREKFPFLKDADS 250 (252)
T ss_pred CceEEEEEECHHHHHHHHhhCCcccccCc
Confidence 49999999999999999999999999863
No 27
>cd07586 nitrilase_8 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=100.00 E-value=1.8e-45 Score=344.69 Aligned_cols=256 Identities=29% Similarity=0.426 Sum_probs=219.2
Q ss_pred EEEEEecccc-cCHHHHHHHHHHHHHHHHHCCCcEEEcCCCCCCCCCCCCc-cchhhhhccCCCCchHHHHHHHHHHHcC
Q 017888 84 KVGLCQLSVT-ADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSF-PVYAEDIDAGGDASPSTAMLSEVARLLK 161 (364)
Q Consensus 84 kIA~vQ~~v~-~d~~~n~~~i~~~i~~A~~~gadLvVfPE~~l~gy~~~~~-~~~~~~~~~~~~~~~~~~~l~~lA~~~~ 161 (364)
|||++|+++. +|++.|++++.+++++|+++|+|||||||++++||...+. .+.+.. ..++.++.|+++++ +
T Consensus 1 kia~~q~~~~~~~~~~n~~~~~~~i~~A~~~ga~liv~PE~~~~g~~~~~~~~~~~~~-----~~~~~~~~l~~~a~--~ 73 (269)
T cd07586 1 RVAIAQIDPVLGDVEENLEKHLEIIETARERGADLVVFPELSLTGYNLGDLVYEVAMH-----ADDPRLQALAEASG--G 73 (269)
T ss_pred CEEEEecCCccCcHHHHHHHHHHHHHHHHHcCCCEEEecchhccCCCchhhhhhhhcc-----cchHHHHHHHHHcC--C
Confidence 6999999976 8999999999999999999999999999999999986542 111111 12345666665552 7
Q ss_pred cEEEEeeeeeec-CCeeEEEEEEEcCCCcEEEEeeccccCCCCCCCcccccccccccCCCCCeEEecCCeeEEEEEeccC
Q 017888 162 ITIVGGSIPERS-GDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETPTIVDTDVGRIGIGICYDI 240 (364)
Q Consensus 162 i~Iv~Gs~~~~~-~~~~yNsa~vi~~~G~i~~~y~K~~L~~~~~P~~~~~~E~~~~~~G~~~~vf~~~~~rigv~IC~D~ 240 (364)
++|++|+ ++.. ++++||++++| ++|+++++|+|+||. .+..|.|..+|++|+++.+|+++++|+|++||||.
T Consensus 74 ~~ii~G~-~~~~~~~~~yNt~~vi-~~G~i~~~y~K~~lp-----~~~~~~e~~~~~~G~~~~vf~~~~~~ig~~IC~D~ 146 (269)
T cd07586 74 ICVVFGF-VEEGRDGRFYNSAAYL-EDGRVVHVHRKVYLP-----TYGLFEEGRYFAPGSHLRAFDTRFGRAGVLICEDA 146 (269)
T ss_pred CEEEEeC-eEEcCCCcEEEEEEEe-cCCEEEEEEEeEeCC-----CCCccceeeeecCCCcceEEEeCCeEEEEEEEecc
Confidence 9999995 4554 58999999999 899999999999983 33346788899999999999999999999999999
Q ss_pred cccHHHHHHHhCCceEEEEeCCCCCCC------ChhHHHHHHHHHHHhcCcEEEEecCCCCCCCCeeeeeEeEEECCCCC
Q 017888 241 RFQELAMIYGARGAHLICYPGAFNMTT------GPLHWELLQRARATDNQLYVATCSPARDEGAGYVAWGHSTLVGPFGE 314 (364)
Q Consensus 241 ~fpe~~r~~~~~Gadlil~ps~~~~~~------~~~~~~~~~~~rA~en~~~vv~~n~~g~~~~~~~~~G~S~Ii~p~G~ 314 (364)
+||++.+.++.+|||+|++|+++++.. ...+|..+.++||+||++||++||+.|.. ++..++|+|+|++|+|+
T Consensus 147 ~fp~~~~~~~~~ga~lil~ps~~~~~~~~~~~~~~~~~~~~~~~rA~e~~~~vv~an~~G~~-~~~~~~G~S~ii~p~G~ 225 (269)
T cd07586 147 WHPSLPYLLALDGADVIFIPANSPARGVGGDFDNEENWETLLKFYAMMNGVYVVFANRVGVE-DGVYFWGGSRVVDPDGE 225 (269)
T ss_pred CCcHHHHHHHHCCCCEEEEeCCCccccCccccchhHHHHHHHHHHHHHhCCeEEEEeeecCc-CCceEeCCcEEECCCCC
Confidence 999999999999999999999976532 12478889999999999999999998764 45678999999999999
Q ss_pred EeEeCC-CCCcEEEEEEchhhHHHHHhcCCCccccccccch
Q 017888 315 VLATTE-HAEDIIIAEIDYSILELRRTSLPLSKQRRGDLYQ 354 (364)
Q Consensus 315 il~~~~-~~e~vl~~~ldl~~~~~~r~~~~~~~~~r~~ly~ 354 (364)
++++.+ ++++++++++|++.++..|..+|++.+++++||+
T Consensus 226 il~~~~~~~~~~~~~~id~~~~~~~r~~~~~~~~~~~~~~~ 266 (269)
T cd07586 226 VVAEAPLFEEDLLVAELDRSAIRRARFFSPTFRDEDIRLVL 266 (269)
T ss_pred EEEecCCccccEEEEEecHHHHHHHHhhCccccccChhhhh
Confidence 999885 6889999999999999999999999999999996
No 28
>cd07570 GAT_Gln-NAD-synth Glutamine aminotransferase (GAT, glutaminase) domain of glutamine-dependent NAD synthetases (class 7 and 8 nitrilases). Glutamine-dependent NAD synthetases are bifunctional enzymes, which have an N-terminal GAT domain and a C-terminal NAD+ synthetase domain. The GAT domain is a glutaminase (EC 3.5.1.2) which hydrolyses L-glutamine to L-glutamate and ammonia. The ammonia is used by the NAD+ synthetase domain in the ATP-dependent amidation of nicotinic acid adenine dinucleotide. Glutamine aminotransferases are categorized depending on their active site residues into different unrelated classes. This class of GAT domain belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this sub
Probab=100.00 E-value=1.4e-45 Score=343.94 Aligned_cols=255 Identities=25% Similarity=0.329 Sum_probs=213.3
Q ss_pred EEEEEecccc-cCHHHHHHHHHHHHHHHHHCCCcEEEcCCCCCCCCCCCCccchhhhhccCCCCchHHHHHHHHHHHcCc
Q 017888 84 KVGLCQLSVT-ADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKI 162 (364)
Q Consensus 84 kIA~vQ~~v~-~d~~~n~~~i~~~i~~A~~~gadLvVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~~~i 162 (364)
|||++|+++. +|+++|++++.+++++|+++|+|||||||++++||...+.......... ..+.++.+.+.++++++
T Consensus 1 ria~~Q~~~~~~d~~~N~~~~~~~i~~A~~~gadlvvfPE~~l~gy~~~~~~~~~~~~~~---~~~~~~~la~~~~~~~i 77 (261)
T cd07570 1 RIALAQLNPTVGDLEGNAEKILEAIREAKAQGADLVVFPELSLTGYPPEDLLLRPDFLEA---AEEALEELAAATADLDI 77 (261)
T ss_pred CEEEEeCCCcCCCHHHHHHHHHHHHHHHHHcCCCEEEccchhccCCChHHHhhCHHHHHH---HHHHHHHHHHhcccCCc
Confidence 6999999976 8999999999999999999999999999999999976432211111110 01344555555555699
Q ss_pred EEEEeeeeeecCCeeEEEEEEEcCCCcEEEEeeccccCCCCCCCcccccccccccCCCCCeEEecCCeeEEEEEeccCcc
Q 017888 163 TIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETPTIVDTDVGRIGIGICYDIRF 242 (364)
Q Consensus 163 ~Iv~Gs~~~~~~~~~yNsa~vi~~~G~i~~~y~K~~L~~~~~P~~~~~~E~~~~~~G~~~~vf~~~~~rigv~IC~D~~f 242 (364)
+|++| .++++++++||++++| ++|+++.+|+|+||++++ .+.|..+|.+|+...+|+++++|||++||||.+|
T Consensus 78 ~ii~G-~~~~~~~~~yNs~~~i-~~G~i~~~y~K~~l~~~~-----~~~e~~~~~~G~~~~~~~~~~~~ig~~IC~D~~f 150 (261)
T cd07570 78 AVVVG-LPLRHDGKLYNAAAVL-QNGKILGVVPKQLLPNYG-----VFDEKRYFTPGDKPDVLFFKGLRIGVEICEDLWV 150 (261)
T ss_pred EEEEe-ceEecCCCEEEEEEEE-eCCEEEEEEECccCcCCc-----cccccccCccCCCCCeEEECCEEEEEEeecccCC
Confidence 99999 5677778999999999 699999999999996643 5578889999999999999999999999999999
Q ss_pred cHH-HHHHHhCCceEEEEeCCCCCCCCh-hHHHHHHHHHHHhcCcEEEEecCCCCCCCCeeeeeEeEEECCCCCEeEeCC
Q 017888 243 QEL-AMIYGARGAHLICYPGAFNMTTGP-LHWELLQRARATDNQLYVATCSPARDEGAGYVAWGHSTLVGPFGEVLATTE 320 (364)
Q Consensus 243 pe~-~r~~~~~Gadlil~ps~~~~~~~~-~~~~~~~~~rA~en~~~vv~~n~~g~~~~~~~~~G~S~Ii~p~G~il~~~~ 320 (364)
|++ .+.++++|||++++|++|++..+. .+|..+.++||+||++||+.+|..|.. ++..+.|.|+|++|+|+++++++
T Consensus 151 pe~~~r~~~~~ga~ll~~ps~~~~~~~~~~~~~~~~~~rA~en~~~vv~~n~~g~~-~~~~~~G~S~ii~p~G~vl~~~~ 229 (261)
T cd07570 151 PDPPSAELALAGADLILNLSASPFHLGKQDYRRELVSSRSARTGLPYVYVNQVGGQ-DDLVFDGGSFIADNDGELLAEAP 229 (261)
T ss_pred CCchHHHHHHcCCcEEEEeCCCccccCcHHHHHHHHHHHHHHhCCcEEEEeCCCCC-ceEEEECceEEEcCCCCEEEecC
Confidence 999 999999999999999998765443 467778999999999999999997654 56789999999999999999986
Q ss_pred CCCcEEEEEEchhhHHHHHhcCCCcccccc
Q 017888 321 HAEDIIIAEIDYSILELRRTSLPLSKQRRG 350 (364)
Q Consensus 321 ~~e~vl~~~ldl~~~~~~r~~~~~~~~~r~ 350 (364)
.. +.+++++|++.++..|..+|..++.--
T Consensus 230 ~~-~~~~~~id~~~~~~~r~~~~~~~~~~~ 258 (261)
T cd07570 230 RF-EEDLADVDLDRLRSERRRNSSFLDEEA 258 (261)
T ss_pred cc-eEEEEEEEEecCcccccccCCCccchh
Confidence 54 789999999999999998887765443
No 29
>KOG0806 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism]
Probab=100.00 E-value=1.8e-46 Score=344.58 Aligned_cols=280 Identities=45% Similarity=0.656 Sum_probs=260.9
Q ss_pred CCCceEEEEEecccc-cCHHHHHHHHHHHHHHHHHCCCcEEEcCCCCCCCCCC-CCccchhhhhccCCCCchHHHHHHHH
Q 017888 79 PVAKFKVGLCQLSVT-ADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSH-DSFPVYAEDIDAGGDASPSTAMLSEV 156 (364)
Q Consensus 79 ~~~~~kIA~vQ~~v~-~d~~~n~~~i~~~i~~A~~~gadLvVfPE~~l~gy~~-~~~~~~~~~~~~~~~~~~~~~~l~~l 156 (364)
...++++|++|..+. .+..+|++.++..+++|+++|++||||||.++.||.. +.+..++|.+.+....++..+.++++
T Consensus 10 ~~~~~~~a~vq~~~~l~~~~~Ni~~~~~~i~~aa~~g~~iIv~PE~~~~gy~~~~sf~py~E~i~~~~~~~ps~~~ls~v 89 (298)
T KOG0806|consen 10 ILPNATEALVSLEEALLLMNENIDILEKAVKEAAKQGAKIIVFPEDGLYGYNFTESFYPYLEDIPDPGCRDPSRQGLSEV 89 (298)
T ss_pred cccccceeeeecccchhhhhhhHHHHHHHHHHHHhcCCeEEEChhhccccccccccccchhhhCCCcccCChhHHHhHHH
Confidence 345689999999988 6999999999999999999999999999999999999 78888888877655668999999999
Q ss_pred HHHcCcEEEEeeeeeec-CCeeEEEEEEEcCCCcEEEEeeccccCCCCCCCcccccccccccCCCCCeEEecCCeeEEEE
Q 017888 157 ARLLKITIVGGSIPERS-GDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETPTIVDTDVGRIGIG 235 (364)
Q Consensus 157 A~~~~i~Iv~Gs~~~~~-~~~~yNsa~vi~~~G~i~~~y~K~~L~~~~~P~~~~~~E~~~~~~G~~~~vf~~~~~rigv~ 235 (364)
|++++++++.|++++.. +++.||++.+++++|+.+..|||.|||+.++|+...|.|...|.+|..+.++++..||||+.
T Consensus 90 a~~~~~~~i~g~i~~~~~~~k~yns~~~~~~~g~l~~~yrk~hlFD~d~~~~~ry~e~~~~~~g~~f~~~~~~~gkfGi~ 169 (298)
T KOG0806|consen 90 AERLSCYIIGGSIEEEALGDKLYNSCADSSCPGDGLAKYRKNHLFDTDGPGVIRYRESHLLSPGDQFTVVDTSYGKFGIF 169 (298)
T ss_pred HhhceEEEecCcchhhcccccccCcccccCCCcchhheeeeeEEeccCCccceeeeeeeccCCCcCCCcccCCCCceEEE
Confidence 99999999999877766 68999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeccCcccHHHHHHHhCCceEEEEeCCCC---CCCChhHHHHHHHHHHHhcCcEEEEecCCCCCCCCeeeee-EeEEECC
Q 017888 236 ICYDIRFQELAMIYGARGAHLICYPGAFN---MTTGPLHWELLQRARATDNQLYVATCSPARDEGAGYVAWG-HSTLVGP 311 (364)
Q Consensus 236 IC~D~~fpe~~r~~~~~Gadlil~ps~~~---~~~~~~~~~~~~~~rA~en~~~vv~~n~~g~~~~~~~~~G-~S~Ii~p 311 (364)
||||++|+|+++.+++.||++|++|++|. .+.++.||..++++||..|.++|+.++..+.....+...| +|.+++|
T Consensus 170 IC~Di~F~d~A~~~~~~g~~~ivyPtaw~~~~l~~~~~hw~~~~~~~a~~n~~~v~~~s~~~~~s~~y~~~gshs~~~~p 249 (298)
T KOG0806|consen 170 ICFDIRFYDPAMILVKDGADLIVYPTAWNNELLSAVPLHWALLMRARANDNAANVHAPSPARTGSGIYAPRGSHSIMVNP 249 (298)
T ss_pred EEecccccchHHHHHHcCCcEEEecchHhhhcccccchHHHHHHhCCcccceeeeeccCcCcCCceeeecCCcceeecCC
Confidence 99999999999999999999999999999 6778899999999999999999999999888777888999 9999999
Q ss_pred CCCEeEeCCCCCcEEEEEEchhhHHHHHhcCCCccccccccchhhhh
Q 017888 312 FGEVLATTEHAEDIIIAEIDYSILELRRTSLPLSKQRRGDLYQLVDI 358 (364)
Q Consensus 312 ~G~il~~~~~~e~vl~~~ldl~~~~~~r~~~~~~~~~r~~ly~~~~~ 358 (364)
.|++++....++.++++++|++.+.+.|+.+|.+++||+|+|.++..
T Consensus 250 ~gkvl~a~~~~~e~~~a~~d~~~~~~~rq~~~~~~~r~~d~y~~~~~ 296 (298)
T KOG0806|consen 250 TGKVLAAAVEKEEIIYADVDPSAIASRRQGLPVFRQRRLDLYSLDLF 296 (298)
T ss_pred cceEeeeccCCCccccccCCHHHHHHHhcccchhhccchhhhhhhcc
Confidence 99999998766669999999999999999999999999999987543
No 30
>PRK13287 amiF formamidase; Provisional
Probab=100.00 E-value=4e-44 Score=344.47 Aligned_cols=263 Identities=22% Similarity=0.321 Sum_probs=220.7
Q ss_pred CCCceEEEEEecccc-----cCHHHHHHHHHHHHHHHHHC--CCcEEEcCCCCCCCCCCCCcc--chhhhhccCCCCchH
Q 017888 79 PVAKFKVGLCQLSVT-----ADKERNIAHARRAIEEAAEK--GAKLILLPEIWNSPYSHDSFP--VYAEDIDAGGDASPS 149 (364)
Q Consensus 79 ~~~~~kIA~vQ~~v~-----~d~~~n~~~i~~~i~~A~~~--gadLvVfPE~~l~gy~~~~~~--~~~~~~~~~~~~~~~ 149 (364)
+..+||||++|+++. +|+++|++++.+++++|++. |+|||||||++++||..+.+. +.+.. ..++.
T Consensus 10 ~~~~l~VAlvQ~~~~~~~~~~d~~~Nl~~i~~~i~~A~~~~~gadLVVfPE~~l~G~~~~~~~~~~~a~~-----~~g~~ 84 (333)
T PRK13287 10 PIEGVLVALIQYPVPVVESRADIDKQIEQIIKTVHKTKAGYPGLDLIVFPEYSTQGLNTKKWTTEEFLCT-----VDGPE 84 (333)
T ss_pred CCCceEEEEEEcccccCCchhhHHHHHHHHHHHHHHHHhcCCCCcEEEcCCcccccCCccccchhhhccc-----CCCHH
Confidence 345699999999962 79999999999999999874 899999999999999765321 22222 23578
Q ss_pred HHHHHHHHHHcCcEEEEeeeeeec-CC-eeEEEEEEEcCCCcEEEEeeccccCCCCCCCcccccccccccCCC-CCeEEe
Q 017888 150 TAMLSEVARLLKITIVGGSIPERS-GD-RLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGE-TPTIVD 226 (364)
Q Consensus 150 ~~~l~~lA~~~~i~Iv~Gs~~~~~-~~-~~yNsa~vi~~~G~i~~~y~K~~L~~~~~P~~~~~~E~~~~~~G~-~~~vf~ 226 (364)
++.++++|+++++++++|. .++. ++ ++||++++|+++|+++.+|+|+|++. | ...|++|+ ...+|+
T Consensus 85 ~~~l~~~a~~~~i~~~~g~-~e~~~~~~~~yNsa~vi~~~G~i~~~YrK~h~~~---p-------~~~~~pG~~~~~v~~ 153 (333)
T PRK13287 85 VDAFAQACKENKVWGVFSI-MERNPDGNEPYNTAIIIDDQGEIILKYRKLHPWV---P-------VEPWEPGDLGIPVCD 153 (333)
T ss_pred HHHHHHHHHHcCeEEEEee-EEEcCCCCceEEEEEEECCCCcEEEEEeecccCC---c-------cccccCCCCCCceEE
Confidence 9999999999999999884 4543 33 39999999999999999999999742 2 13478998 688999
Q ss_pred cC-CeeEEEEEeccCcccHHHHHHHhCCceEEEEeCCCCCCCChhHHHHHHHHHHHhcCcEEEEecCCCCCCCCeeeeeE
Q 017888 227 TD-VGRIGIGICYDIRFQELAMIYGARGAHLICYPGAFNMTTGPLHWELLQRARATDNQLYVATCSPARDEGAGYVAWGH 305 (364)
Q Consensus 227 ~~-~~rigv~IC~D~~fpe~~r~~~~~Gadlil~ps~~~~~~~~~~~~~~~~~rA~en~~~vv~~n~~g~~~~~~~~~G~ 305 (364)
++ +.|+|++||||.+|||++|.++++|||+|++|++|... ...+|....++||+||++|++.+|++|.. ....++|+
T Consensus 154 ~~~g~kiG~~ICyD~~fPe~~R~~a~~GAeill~~s~~~~~-~~~~w~~~~~arA~en~~~vv~an~~G~~-~~~~~~G~ 231 (333)
T PRK13287 154 GPGGSKLAVCICHDGMFPEMAREAAYKGANVMIRISGYSTQ-VREQWILTNRSNAWQNLMYTASVNLAGYD-GVFYYFGE 231 (333)
T ss_pred CCCCceEEEEEEecccchHHHHHHHHCCCeEEEECCccCCc-chhHHHHHHHHHHHhCCcEEEEEeccccC-CCeeeeee
Confidence 86 55999999999999999999999999999999998764 35688888999999999999999999865 45788999
Q ss_pred eEEECCCCCEeEeCC-CCCcEEEEEEchhhHHHHHhcCCC--------------------------ccccccccchhhhh
Q 017888 306 STLVGPFGEVLATTE-HAEDIIIAEIDYSILELRRTSLPL--------------------------SKQRRGDLYQLVDI 358 (364)
Q Consensus 306 S~Ii~p~G~il~~~~-~~e~vl~~~ldl~~~~~~r~~~~~--------------------------~~~~r~~ly~~~~~ 358 (364)
|+|++|+|+++++++ ++++++++++|++.++++|..+++ ++|.+.+-|++.|+
T Consensus 232 S~Iidp~G~vl~~~~~~~~~ii~aeid~~~~~~~R~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (333)
T PRK13287 232 GQVCNFDGTTLVQGHRNPWEIVTAEVRPDLADEARLGWGLENNIYNLGHRGYVAVPGGAKDCPYTYMKDLAAGKYKLPWE 311 (333)
T ss_pred eEEECCCCcEEEeCCCCCCeEEEEEEeHHHHHHHHHhcCccccchhhcccceecccCccccCchHHHHHHHhhhhcCccc
Confidence 999999999999986 678999999999999999998776 45666677777776
Q ss_pred h
Q 017888 359 Q 359 (364)
Q Consensus 359 ~ 359 (364)
+
T Consensus 312 ~ 312 (333)
T PRK13287 312 D 312 (333)
T ss_pred c
Confidence 4
No 31
>cd07567 biotinidase_like biotinidase and vanins (class 4 nitrilases). These secondary amidases participate in vitamin recycling. Biotinidase (EC 3.5.1.12) has both a hydrolase and a transferase activity. It hydrolyzes free biocytin or small biotinyl-peptides produced during the proteolytic degradation of biotin-dependent carboxylases, to release free biotin (vitamin H), and it can transfer biotin to acceptor molecules such as histones. Biotinidase deficiency in humans is an autosomal recessive disorder characterized by neurological and cutaneous symptoms. This subgroup includes the three human vanins, vanin1-3. Vanins are ectoenzymes, Vanin-1, and -2 are membrane associated, vanin-3 is secreted. They are pantotheinases (EC 3.5.1.92, pantetheine hydrolase), which convert pantetheine, to pantothenic acid (vitamin B5) and cysteamine (2-aminoethanethiol, a potent anti-oxidant). They are potential targets for therapeutic intervention in inflammatory disorders. Vanin-1 deficient mice lacking
Probab=100.00 E-value=8.8e-45 Score=343.47 Aligned_cols=239 Identities=26% Similarity=0.309 Sum_probs=200.4
Q ss_pred EEEEEecccc-cCH-------HHHHHHHHHHHHHHHHCCCcEEEcCCCCCCCCCCCCccc--hhhhhc------------
Q 017888 84 KVGLCQLSVT-ADK-------ERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPV--YAEDID------------ 141 (364)
Q Consensus 84 kIA~vQ~~v~-~d~-------~~n~~~i~~~i~~A~~~gadLvVfPE~~l~gy~~~~~~~--~~~~~~------------ 141 (364)
|+|++|..+. .+. ++|++++.+++++|+++|+|||||||++++||...++.. +++.+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~Nl~~i~~~i~~A~~~gadLIVfPE~~ltGy~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (299)
T cd07567 2 IAAVVEHHPILSPDPDALQIMEKNLDIYEEIIKSAAKQGADIIVFPEDGLTGFIFTRFVIYPFLEDVPDPEVNWNPCLDP 81 (299)
T ss_pred EEEEEEEEeeccCCccHHHHHHHHHHHHHHHHHHHHHcCCCEEEccccccCCCCCCccccCchhcccccccccccccccc
Confidence 7899999864 444 999999999999999999999999999999998654321 111110
Q ss_pred cCCCCchHHHHHHHHHHHcCcEEEEeeeeeec-----------C-CeeEEEEEEEcCCCcEEEEeeccccCCCCCCCccc
Q 017888 142 AGGDASPSTAMLSEVARLLKITIVGGSIPERS-----------G-DRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKIT 209 (364)
Q Consensus 142 ~~~~~~~~~~~l~~lA~~~~i~Iv~Gs~~~~~-----------~-~~~yNsa~vi~~~G~i~~~y~K~~L~~~~~P~~~~ 209 (364)
.....++.++.|+++|++++++|++| +.++. + +++||++++|+++|+++++|+|+|||
T Consensus 82 ~~~~~~~~~~~l~~lAr~~~i~Iv~G-~~e~~~~~~~~~~~~~~~~~~yNsa~vi~~~G~iv~~YrK~hLf--------- 151 (299)
T cd07567 82 DRFDYTEVLQRLSCAARENSIYVVAN-LGEKQPCDSSDPHCPPDGRYQYNTNVVFDRDGTLIARYRKYNLF--------- 151 (299)
T ss_pred cccCchHHHHHHHHHHHHhCeEEEec-cccccccccccccCCCCCCceeEEEEEEcCCCCccceEeecccc---------
Confidence 00123578999999999999999999 44542 2 36999999999999999999999995
Q ss_pred ccccccccCCC-CCeEEecCCe-eEEEEEeccCcccHHHHHHHhC-CceEEEEeCCCCCCCChhHHHHHHHHHHHhcCcE
Q 017888 210 FIESKSLTAGE-TPTIVDTDVG-RIGIGICYDIRFQELAMIYGAR-GAHLICYPGAFNMTTGPLHWELLQRARATDNQLY 286 (364)
Q Consensus 210 ~~E~~~~~~G~-~~~vf~~~~~-rigv~IC~D~~fpe~~r~~~~~-Gadlil~ps~~~~~~~~~~~~~~~~~rA~en~~~ 286 (364)
.|..+|.+|+ ++.+|+++++ |||++||||++|||++|.++++ |||+|++|++|....+..+|..+.++||+||++|
T Consensus 152 -~E~~~~~~G~~~~~vf~t~~g~kiGvlICyD~~FPE~~r~la~~~GAdlil~paaw~~~~~~~~w~~l~~arA~eN~~~ 230 (299)
T cd07567 152 -GEPGFDVPPEPEIVTFDTDFGVTFGIFTCFDILFKEPALELVKKLGVDDIVFPTAWFSELPFLTAVQIQQAWAYANGVN 230 (299)
T ss_pred -ccccccCCCCCCceEEECCCCCEEEEEEEeeccchHHHHHHHHhCCCCEEEECCccCCCCCchhHHHHHHHHHHHcCce
Confidence 3677888996 5899999986 9999999999999999999999 9999999999976544568999999999999999
Q ss_pred EEEecCCCCCCCCeeeeeEeEEECCC-CCEeEeCC--CCCcEEEEEEchhhHHH
Q 017888 287 VATCSPARDEGAGYVAWGHSTLVGPF-GEVLATTE--HAEDIIIAEIDYSILEL 337 (364)
Q Consensus 287 vv~~n~~g~~~~~~~~~G~S~Ii~p~-G~il~~~~--~~e~vl~~~ldl~~~~~ 337 (364)
|+.||..|.. .+.|+|+|++|+ |+++++++ .++++++++||++..+.
T Consensus 231 vi~~N~~g~~----~~~G~S~iv~P~~G~v~a~~~~~~~e~~l~~~id~~~~~~ 280 (299)
T cd07567 231 LLAANYNNPS----AGMTGSGIYAGRSGALVYHYDNEPGGKLLVAEVPKLPSRR 280 (299)
T ss_pred EEEecCCCCc----CccccceEEcCCCCcEEEEecCCCCceEEEEEccCCcccc
Confidence 9999998742 357999999999 99999974 47889999999987664
No 32
>PRK13286 amiE acylamide amidohydrolase; Provisional
Probab=100.00 E-value=8.5e-44 Score=342.85 Aligned_cols=257 Identities=22% Similarity=0.235 Sum_probs=213.2
Q ss_pred CceEEEEEeccc-----ccCHHHHHHHHHHHHHHHH--HCCCcEEEcCCCCCCCCCCCC--ccchhhhhccCCCCchHHH
Q 017888 81 AKFKVGLCQLSV-----TADKERNIAHARRAIEEAA--EKGAKLILLPEIWNSPYSHDS--FPVYAEDIDAGGDASPSTA 151 (364)
Q Consensus 81 ~~~kIA~vQ~~v-----~~d~~~n~~~i~~~i~~A~--~~gadLvVfPE~~l~gy~~~~--~~~~~~~~~~~~~~~~~~~ 151 (364)
..|+||++|+++ ..|+.+|++++.+.+++|+ ..|+|||||||++++||.+.. +.+.+.. ..++..+
T Consensus 11 ~~l~va~vQ~~~p~~~~~~di~~Nl~~i~~~i~~a~~~~~gadLVVfPE~~l~G~~y~~~~~~~~a~~-----i~g~~~~ 85 (345)
T PRK13286 11 DTVGVAVVNYKMPRLHTKAEVLENARKIADMIVGMKQGLPGMDLVIFPEYSTHGIMYDRQEMYETAST-----IPGEETA 85 (345)
T ss_pred CceEEEEEEcCCCccCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEcCCccccCCCcChHHHHHhccc-----CCCHHHH
Confidence 459999999984 2689999999999999987 458999999999999976543 2222222 2357889
Q ss_pred HHHHHHHHcCcEEEEeeeeee----cCCeeEEEEEEEcCCCcEEEEeeccccCCCCCCCcccccccccccCCCCCeEEec
Q 017888 152 MLSEVARLLKITIVGGSIPER----SGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETPTIVDT 227 (364)
Q Consensus 152 ~l~~lA~~~~i~Iv~Gs~~~~----~~~~~yNsa~vi~~~G~i~~~y~K~~L~~~~~P~~~~~~E~~~~~~G~~~~vf~~ 227 (364)
.++++|+++++++++|...++ .++.+||++++|+++|+++.+|+|+|++. +...|.+|+...+|++
T Consensus 86 ~l~~~A~~~~i~~v~~i~ge~~~~~~~~~~yNta~vi~~~G~i~~~YrK~~p~~----------~~e~~~pG~~~~v~~~ 155 (345)
T PRK13286 86 IFAEACRKAKVWGVFSLTGERHEEHPRKAPYNTLILINDKGEIVQKYRKIMPWC----------PIEGWYPGDCTYVSEG 155 (345)
T ss_pred HHHHHHHHcCEEEEEeccccccccCCCCceeEEEEEECCCCeEEEEEEeecCCc----------hhhceecCCCCEEEeC
Confidence 999999999999888743232 24569999999999999999999999753 2345789999999998
Q ss_pred CC-eeEEEEEeccCcccHHHHHHHhCCceEEEEeCCCCCCCChhHHHHHHHHHHHhcCcEEEEecCCCCCCCCeeeeeEe
Q 017888 228 DV-GRIGIGICYDIRFQELAMIYGARGAHLICYPGAFNMTTGPLHWELLQRARATDNQLYVATCSPARDEGAGYVAWGHS 306 (364)
Q Consensus 228 ~~-~rigv~IC~D~~fpe~~r~~~~~Gadlil~ps~~~~~~~~~~~~~~~~~rA~en~~~vv~~n~~g~~~~~~~~~G~S 306 (364)
+. .|||++||||.+|||++|.++++|||+|++|++|... ...+|..++++||+||++||+.||.+|..+ ++.+.|+|
T Consensus 156 ~~G~kiG~lIC~D~~fPE~~R~la~~GAelii~psa~~~~-~~~~~~~~~rarA~eN~~yVv~aN~~G~~~-~~~~~G~S 233 (345)
T PRK13286 156 PKGLKISLIICDDGNYPEIWRDCAMKGAELIVRCQGYMYP-AKEQQVLVAKAMAWANNCYVAVANAAGFDG-VYSYFGHS 233 (345)
T ss_pred CCCcEEEEEEEecccChHHHHHHHHcCCeEEEEccccCCC-chHHHHHHHHHHHHHCCCEEEEEecccccC-CceeeeeE
Confidence 65 4999999999999999999999999999999998653 456899999999999999999999998653 56899999
Q ss_pred EEECCCCCEeEeCC-CCCcEEEEEEchhhHHHHHhcCCCcc---ccccccch
Q 017888 307 TLVGPFGEVLATTE-HAEDIIIAEIDYSILELRRTSLPLSK---QRRGDLYQ 354 (364)
Q Consensus 307 ~Ii~p~G~il~~~~-~~e~vl~~~ldl~~~~~~r~~~~~~~---~~r~~ly~ 354 (364)
+|++|+|+++++++ +++++++++||++.++++|..++... +.+.+-|.
T Consensus 234 ~Ivdp~G~vla~~~~~~e~ii~adld~~~i~~~R~~~~~~n~~~~~~~~~y~ 285 (345)
T PRK13286 234 AIIGFDGRTLGECGEEEMGIQYAQLSVSQIRDARRNDQSQNHLFKLLHRGYT 285 (345)
T ss_pred EEECCCCcEEEecCCCCCeEEEEEEeHHHHHHHHHhCCcccchhhhccceEE
Confidence 99999999999986 67899999999999999999986633 34444443
No 33
>cd07582 nitrilase_4 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=100.00 E-value=3.2e-43 Score=333.80 Aligned_cols=261 Identities=24% Similarity=0.263 Sum_probs=209.6
Q ss_pred EEEEEeccc-----ccCHHHHHHHHHHHHHHHHH-----CCCcEEEcCCCCCCCCCCCCccchhhhhc-cCCCCchHHHH
Q 017888 84 KVGLCQLSV-----TADKERNIAHARRAIEEAAE-----KGAKLILLPEIWNSPYSHDSFPVYAEDID-AGGDASPSTAM 152 (364)
Q Consensus 84 kIA~vQ~~v-----~~d~~~n~~~i~~~i~~A~~-----~gadLvVfPE~~l~gy~~~~~~~~~~~~~-~~~~~~~~~~~ 152 (364)
.++.+|+.+ .+|++.|++++.+++++|++ +|+|||||||++++||...+........+ .....++.++.
T Consensus 2 ~~~~~~~~~~~~~~~~d~~~Nl~~~~~~i~~A~~~~~~~~gadlivfPE~~ltGy~~~~~~~~~~~~~~a~~~~~~~~~~ 81 (294)
T cd07582 2 TALALQPTCEAAEDRADILANIDRINEQIDAAVGFSGPGLPVRLVVLPEYALQGFPMGEPREVWQFDKAAIDIPGPETEA 81 (294)
T ss_pred eeEEEecccccccChhhHHHHHHHHHHHHHHHHHhcccCCCceEEEcCccccccCCcccchhhhhhhhccccCCCHHHHH
Confidence 467788864 27999999999999999987 47999999999999998754321100000 01124679999
Q ss_pred HHHHHHHcCcEEEEeeeeeecC---CeeEEEEEEEcCCCcEEEEeeccccCCCC---CCCcccccc-cccccCC-C-CCe
Q 017888 153 LSEVARLLKITIVGGSIPERSG---DRLYNTCCVFGSDGKLIAKHRKIHLFDID---IPGKITFIE-SKSLTAG-E-TPT 223 (364)
Q Consensus 153 l~~lA~~~~i~Iv~Gs~~~~~~---~~~yNsa~vi~~~G~i~~~y~K~~L~~~~---~P~~~~~~E-~~~~~~G-~-~~~ 223 (364)
|+++|++++++|++|++ ++++ +++||++++|+++|+++++|+|+||+..+ .|. ..+.| ..++.+| + .+.
T Consensus 82 l~~~A~~~~i~iv~G~~-e~~~~~~~~~yNsa~~i~~~G~i~~~yrK~hl~~~~~e~~p~-~~~~~~~~~~g~g~~~~~~ 159 (294)
T cd07582 82 LGEKAKELNVYIAANAY-ERDPDFPGLYFNTAFIIDPSGEIILRYRKMNSLAAEGSPSPH-DVWDEYIEVYGYGLDALFP 159 (294)
T ss_pred HHHHHHHcCEEEEEeee-eecCCCCCcEEEEEEEECCCCcEEEEEeeeccCccccccCcc-chhhhhcccCCCcccccce
Confidence 99999999999999954 5543 68999999999999999999999996521 111 11122 1234454 3 368
Q ss_pred EEecCCeeEEEEEeccCcccHHHHHHHhCCceEEEEeCCCCCCCChhHHHHHHHHHHHhcCcEEEEecCCCCCCC---Ce
Q 017888 224 IVDTDVGRIGIGICYDIRFQELAMIYGARGAHLICYPGAFNMTTGPLHWELLQRARATDNQLYVATCSPARDEGA---GY 300 (364)
Q Consensus 224 vf~~~~~rigv~IC~D~~fpe~~r~~~~~Gadlil~ps~~~~~~~~~~~~~~~~~rA~en~~~vv~~n~~g~~~~---~~ 300 (364)
+|+++++|||++||||.+|||++|.++++|||+|++|++|.......+|+.+.++||+||++||+.+|+.|..+. +.
T Consensus 160 v~~~~~~~iG~~ICyD~~fpe~~r~la~~Gadlil~psa~~~~~~~~~~~~~~~arA~en~~~vv~aN~~G~~~~~~~~~ 239 (294)
T cd07582 160 VADTEIGNLGCLACEEGLYPEVARGLAMNGAEVLLRSSSEVPSVELDPWEIANRARALENLAYVVSANSGGIYGSPYPAD 239 (294)
T ss_pred eecCCCceEEEEEeecccChHHHHHHHHCCCcEEEEcCCCCCCcchhhHHHHHHHHHHhcCCEEEEecccccCcccccCc
Confidence 999999999999999999999999999999999999999876544567888899999999999999998875443 46
Q ss_pred eeeeEeEEECCCCCEeEeCC-C-CCcEEEEEEchhhHHHHHhcCCCcc
Q 017888 301 VAWGHSTLVGPFGEVLATTE-H-AEDIIIAEIDYSILELRRTSLPLSK 346 (364)
Q Consensus 301 ~~~G~S~Ii~p~G~il~~~~-~-~e~vl~~~ldl~~~~~~r~~~~~~~ 346 (364)
.+.|.|+|++|+|+++++++ + +++++++++|++.++..|..+++.+
T Consensus 240 ~~~G~S~ivdp~G~vla~~~~~~~e~il~~~id~~~~~~~R~~~~~~~ 287 (294)
T cd07582 240 SFGGGSMIVDYKGRVLAEAGYGPGSMVAGAEIDIEALRRARARPGMHN 287 (294)
T ss_pred eecceeEEECCCCCEEEeCCCCCCCeEEEEEEcHHHHHHHHHhcCccc
Confidence 78999999999999999986 5 7899999999999999999987744
No 34
>cd07197 nitrilase Nitrilase superfamily, including nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes. This superfamily (also known as the C-N hydrolase superfamily) contains hydrolases that break carbon-nitrogen bonds; it includes nitrilases, cyanide dihydratases, aliphatic amidases, N-terminal amidases, beta-ureidopropionases, biotinidases, pantotheinase, N-carbamyl-D-amino acid amidohydrolases, the glutaminase domain of glutamine-dependent NAD+ synthetase, apolipoprotein N-acyltransferases, and N-carbamoylputrescine amidohydrolases, among others. These enzymes depend on a Glu-Lys-Cys catalytic triad, and work through a thiol acylenzyme intermediate. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. These oligomers include dimers, tetramers, hexamers, octamers, tetradecamers, octadecamers, as well as variable length helical arrangements and homo-oligomeric spirals. These proteins have roles in vitamin and
Probab=100.00 E-value=4.8e-43 Score=324.29 Aligned_cols=251 Identities=42% Similarity=0.640 Sum_probs=218.4
Q ss_pred EEEEecccc-cCHHHHHHHHHHHHHHHHHCCCcEEEcCCCCCCCCCCCCccchhhhhccCCCCchHHHHHHHHHHHcCcE
Q 017888 85 VGLCQLSVT-ADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKIT 163 (364)
Q Consensus 85 IA~vQ~~v~-~d~~~n~~~i~~~i~~A~~~gadLvVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~~~i~ 163 (364)
||++|+++. +++++|++++.+.+++|.++|+|||||||++++||...+........ .....+..+.++++|++++++
T Consensus 1 ia~~Q~~~~~~~~~~n~~~~~~~i~~a~~~g~dlvvfPE~~l~g~~~~~~~~~~~~~--~~~~~~~~~~l~~~a~~~~i~ 78 (253)
T cd07197 1 IAAVQLAPKIGDVEANLAKALRLIKEAAEQGADLIVLPELFLTGYSFESAKEDLDLA--EELDGPTLEALAELAKELGIY 78 (253)
T ss_pred CEEEEccCCCCCHHHHHHHHHHHHHHHHHCCCCEEEcCCccccCCccccchhhhhhc--ccCCchHHHHHHHHHHHhCeE
Confidence 689999987 99999999999999999999999999999999999775432210000 011246889999999999999
Q ss_pred EEEeeeeeecCCeeEEEEEEEcCCCcEEEEeeccccCCCCCCCcccccccccccCCCCCeEEecCCeeEEEEEeccCccc
Q 017888 164 IVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETPTIVDTDVGRIGIGICYDIRFQ 243 (364)
Q Consensus 164 Iv~Gs~~~~~~~~~yNsa~vi~~~G~i~~~y~K~~L~~~~~P~~~~~~E~~~~~~G~~~~vf~~~~~rigv~IC~D~~fp 243 (364)
|++|+ ++++++++||++++++++|+++.+|+|.||++ |.|..+|++|+...+|+++++|+|++||||.+||
T Consensus 79 ii~G~-~~~~~~~~~N~~~~i~~~G~i~~~~~K~~l~~--------~~E~~~~~~g~~~~~f~~~~~~ig~~IC~d~~~~ 149 (253)
T cd07197 79 IVAGI-AEKDGDKLYNTAVVIDPDGEIIGKYRKIHLFD--------FGERRYFSPGDEFPVFDTPGGKIGLLICYDLRFP 149 (253)
T ss_pred EEeee-EEccCCceEEEEEEECCCCeEEEEEEEeecCC--------CcccceecCCCCCceEEcCCceEEEEEEecCCCc
Confidence 99995 57777899999999999999999999999975 3577889999999999999999999999999999
Q ss_pred HHHHHHHhCCceEEEEeCCCCCCCChhHHHHHHHHHHHhcCcEEEEecCCCCCCCCeeeeeEeEEECCCCCEeEeCCCCC
Q 017888 244 ELAMIYGARGAHLICYPGAFNMTTGPLHWELLQRARATDNQLYVATCSPARDEGAGYVAWGHSTLVGPFGEVLATTEHAE 323 (364)
Q Consensus 244 e~~r~~~~~Gadlil~ps~~~~~~~~~~~~~~~~~rA~en~~~vv~~n~~g~~~~~~~~~G~S~Ii~p~G~il~~~~~~e 323 (364)
+..+.+.++|+|+|++|+++.... ..+|..+++.||+||++|+++||+.|..+ +..+.|.|+|++|+|+++++.+..+
T Consensus 150 ~~~~~~~~~g~dli~~ps~~~~~~-~~~~~~~~~~~A~e~~~~vv~~n~~G~~~-~~~~~G~S~i~~p~G~~~~~~~~~~ 227 (253)
T cd07197 150 ELARELALKGADIILVPAAWPTAR-REHWELLLRARAIENGVYVVAANRVGEEG-GLEFAGGSMIVDPDGEVLAEASEEE 227 (253)
T ss_pred HHHHHHHHCCCcEEEECCcCCCcc-hHHHHHHHHHHHHHhCCeEEEecCCCCCC-CccccceeEEECCCCceeeecCCCC
Confidence 999999999999999999987653 56888899999999999999999987644 7789999999999999999886339
Q ss_pred cEEEEEEchhhHHHHHhcCCCcccc
Q 017888 324 DIIIAEIDYSILELRRTSLPLSKQR 348 (364)
Q Consensus 324 ~vl~~~ldl~~~~~~r~~~~~~~~~ 348 (364)
+++++++|++.++..|..++...++
T Consensus 228 ~~~~~~id~~~~~~~r~~~~~~~~~ 252 (253)
T cd07197 228 GILVAELDLDELREARKRWSYLRDR 252 (253)
T ss_pred cEEEEEeCHHHHHHHHhhCCccccc
Confidence 9999999999999999988555443
No 35
>PRK02628 nadE NAD synthetase; Reviewed
Probab=100.00 E-value=8.9e-42 Score=355.54 Aligned_cols=259 Identities=24% Similarity=0.273 Sum_probs=219.2
Q ss_pred CCceEEEEEecccc-cCHHHHHHHHHHHHHHHHHCCCcEEEcCCCCCCCCCCCCccchhhhhccCCCCchHHHHHHHHHH
Q 017888 80 VAKFKVGLCQLSVT-ADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVAR 158 (364)
Q Consensus 80 ~~~~kIA~vQ~~v~-~d~~~n~~~i~~~i~~A~~~gadLvVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~ 158 (364)
.+.||||++|+++. +|++.|++++.+++++|+++|||||||||++++||.+.++......... ..+.++.|+++|+
T Consensus 10 ~~~mrIAlaQ~~~~~gD~~~Nl~~i~~~i~~A~~~gadLvVfPEL~ltGY~~~dl~~~~~~~~~---~~~~l~~L~~~a~ 86 (679)
T PRK02628 10 HGFVRVAAATPKVRVADPAFNAARILALARRAADDGVALAVFPELSLSGYSCDDLFLQDTLLDA---VEDALATLVEASA 86 (679)
T ss_pred CCcEEEEEEeCCcccCCHHHHHHHHHHHHHHHHHCCCeEEEcccccccCCCcchhhccHHHHHh---hHHHHHHHHHHHh
Confidence 45799999999987 9999999999999999999999999999999999987664321111111 1358888999999
Q ss_pred HcCcEEEEeeeeeecCCeeEEEEEEEcCCCcEEEEeeccccCCCCCCCcccccccccccCCCCC----------------
Q 017888 159 LLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETP---------------- 222 (364)
Q Consensus 159 ~~~i~Iv~Gs~~~~~~~~~yNsa~vi~~~G~i~~~y~K~~L~~~~~P~~~~~~E~~~~~~G~~~---------------- 222 (364)
++++.|++| +++..++++||++++|+ +|++++.|+|+||+ ++..|+|+++|++|+..
T Consensus 87 ~~~i~ivvG-~p~~~~~~lyNsa~vi~-~G~il~~y~K~hLp-----~~~~f~E~r~F~~G~~~~~~~~~~~g~~vpfG~ 159 (679)
T PRK02628 87 DLDPLLVVG-APLRVRHRLYNCAVVIH-RGRILGVVPKSYLP-----NYREFYEKRWFAPGDGARGETIRLCGQEVPFGT 159 (679)
T ss_pred hcCEEEEEe-eEEEECCEEEEEEEEEc-CCEEEEEeccccCC-----CCCcccccccccCCCCCCCceEeecCeeeccCC
Confidence 999999999 67777889999999997 79999999999984 44578999999999863
Q ss_pred -eEEec---CCeeEEEEEeccCcccHHH-HHHHhCCceEEEEeCCCCCCCChhHHH-HHHHHHHHhcCcEEEEecCCCC-
Q 017888 223 -TIVDT---DVGRIGIGICYDIRFQELA-MIYGARGAHLICYPGAFNMTTGPLHWE-LLQRARATDNQLYVATCSPARD- 295 (364)
Q Consensus 223 -~vf~~---~~~rigv~IC~D~~fpe~~-r~~~~~Gadlil~ps~~~~~~~~~~~~-~~~~~rA~en~~~vv~~n~~g~- 295 (364)
.+|++ +++|||+.||||+||||.. +.++++|||+|++|++|+...++.+|+ .+.+.+|.+++.+++++|+.++
T Consensus 160 ~~vf~~~~~~g~kiGv~IC~DlwfPe~~~~~la~~GAdIil~psAsp~~~gk~~~r~~l~~~~aar~~~~~v~~n~~~G~ 239 (679)
T PRK02628 160 DLLFEAEDLPGFVFGVEICEDLWVPIPPSSYAALAGATVLANLSASNITVGKADYRRLLVASQSARCLAAYVYAAAGVGE 239 (679)
T ss_pred ceeEEecccCCcEEEEEEeccccccCchhhHHhcCCCEEEEeCCCCCcccCcHHHHHHHHHHHHHHhCcEEEEEeccccc
Confidence 24655 6889999999999999984 889999999999999999887776665 5677888888777777765443
Q ss_pred CCCCeeeeeEeEEECCCCCEeEeCC---CCCcEEEEEEchhhHHHHHhcCCCccccc
Q 017888 296 EGAGYVAWGHSTLVGPFGEVLATTE---HAEDIIIAEIDYSILELRRTSLPLSKQRR 349 (364)
Q Consensus 296 ~~~~~~~~G~S~Ii~p~G~il~~~~---~~e~vl~~~ldl~~~~~~r~~~~~~~~~r 349 (364)
..++..|+|+|+|++ +|+++++++ .+++++++++|++.++..|..+|++.+++
T Consensus 240 ~~~~~vf~G~S~I~~-~G~vla~a~~f~~~e~l~~adiDl~~v~~~R~~~~~~~d~~ 295 (679)
T PRK02628 240 STTDLAWDGQTLIYE-NGELLAESERFPREEQLIVADVDLERLRQERLRNGSFDDNA 295 (679)
T ss_pred CCCCeEEeCeEEEEc-CCeEEEecCCCCCCCcEEEEEEcHHHHHHHHhhcCCcccch
Confidence 456789999999998 999999985 45679999999999999999999988887
No 36
>PRK13981 NAD synthetase; Provisional
Probab=100.00 E-value=5.1e-41 Score=343.18 Aligned_cols=238 Identities=29% Similarity=0.385 Sum_probs=206.9
Q ss_pred eEEEEEecccc-cCHHHHHHHHHHHHHHHHHCCCcEEEcCCCCCCCCCCCCccchhhhhccCCCCchHHHHHHHHHHH--
Q 017888 83 FKVGLCQLSVT-ADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARL-- 159 (364)
Q Consensus 83 ~kIA~vQ~~v~-~d~~~n~~~i~~~i~~A~~~gadLvVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~-- 159 (364)
||||++|+++. +|++.|++++.+.+++|+++|||||||||++++||.+.++....+.. ....+.+.++|++
T Consensus 1 mkIAl~Q~~~~~gd~~~N~~~i~~~i~~A~~~gadLIVfPEl~ltGy~~~d~~~~~~~~------~~~~~~l~~La~~~~ 74 (540)
T PRK13981 1 LRIALAQLNPTVGDIAGNAAKILAAAAEAADAGADLLLFPELFLSGYPPEDLLLRPAFL------AACEAALERLAAATA 74 (540)
T ss_pred CEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECcchhhcCCChhhhhcCHHHH------HHHHHHHHHHHHhcC
Confidence 79999999986 89999999999999999999999999999999999875542211111 1245667777776
Q ss_pred cCcEEEEeeeeeecCCeeEEEEEEEcCCCcEEEEeeccccCCCCCCCcccccccccccCCCCCeEEecCCeeEEEEEecc
Q 017888 160 LKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETPTIVDTDVGRIGIGICYD 239 (364)
Q Consensus 160 ~~i~Iv~Gs~~~~~~~~~yNsa~vi~~~G~i~~~y~K~~L~~~~~P~~~~~~E~~~~~~G~~~~vf~~~~~rigv~IC~D 239 (364)
++++|++| .+++.++++||++++|+ +|+++++|+|+||++++ .|.|..+|++|+...+|+++++|+|++||||
T Consensus 75 ~~i~ii~G-~~~~~~~~~yNsa~vi~-~G~i~~~y~K~~L~~~~-----~~~E~~~f~~G~~~~~~~~~g~rigv~IC~D 147 (540)
T PRK13981 75 GGPAVLVG-HPWREGGKLYNAAALLD-GGEVLATYRKQDLPNYG-----VFDEKRYFAPGPEPGVVELKGVRIGVPICED 147 (540)
T ss_pred CCCEEEEe-CcEeeCCcEEEEEEEEE-CCeEEEEEeeeeCCCCC-----CcCccccccCCCCceEEEECCEEEEEEEehh
Confidence 79999999 56777889999999997 89999999999996543 6789999999999999999999999999999
Q ss_pred CcccHHHHHHHhCCceEEEEeCCCCCCCCh-hHHHHHHHHHHHhcCcEEEEecCCCCCCCCeeeeeEeEEECCCCCEeEe
Q 017888 240 IRFQELAMIYGARGAHLICYPGAFNMTTGP-LHWELLQRARATDNQLYVATCSPARDEGAGYVAWGHSTLVGPFGEVLAT 318 (364)
Q Consensus 240 ~~fpe~~r~~~~~Gadlil~ps~~~~~~~~-~~~~~~~~~rA~en~~~vv~~n~~g~~~~~~~~~G~S~Ii~p~G~il~~ 318 (364)
.|||++.+.++.+|||+|++|++|++..+. .+|..+.+.||+||++|+++||++|.. ++..|.|+|+|++|+|+++++
T Consensus 148 ~~~pe~~r~la~~Gadlil~psa~~~~~~~~~~~~~~~~~rA~En~~~vv~aN~vG~~-~~~~f~G~S~i~dp~G~il~~ 226 (540)
T PRK13981 148 IWNPEPAETLAEAGAELLLVPNASPYHRGKPDLREAVLRARVRETGLPLVYLNQVGGQ-DELVFDGASFVLNADGELAAR 226 (540)
T ss_pred hcCCcHHHHHHHCCCcEEEEcCCCcccCCcHHHHHHHHHHHHHHhCCeEEEEecccCC-CceEEeCceEEECCCCCEeee
Confidence 999999999999999999999998765443 456778999999999999999998864 577899999999999999999
Q ss_pred CC-CCCcEEEEEEchhh
Q 017888 319 TE-HAEDIIIAEIDYSI 334 (364)
Q Consensus 319 ~~-~~e~vl~~~ldl~~ 334 (364)
++ ++++++++++|++.
T Consensus 227 ~~~~~e~~l~~did~~~ 243 (540)
T PRK13981 227 LPAFEEQIAVVDFDRGE 243 (540)
T ss_pred cCCCCCcEEEEEEeecC
Confidence 86 78999999999953
No 37
>cd07571 ALP_N-acyl_transferase Apolipoprotein N-acyl transferase (class 9 nitrilases). ALP N-acyl transferase (Lnt), is an essential membrane-bound enzyme in gram-negative bacteria, which catalyzes the N-acylation of apolipoproteins, the final step in lipoprotein maturation. This is a reverse amidase (i.e. condensation) reaction. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 9.
Probab=100.00 E-value=3.4e-41 Score=316.13 Aligned_cols=227 Identities=21% Similarity=0.325 Sum_probs=195.1
Q ss_pred eEEEEEecccc-c------CHHHHHHHHHHHHHHHHHCCCcEEEcCCCCCCCCCCCCccchhhhhccCCCCchHHHHHHH
Q 017888 83 FKVGLCQLSVT-A------DKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSE 155 (364)
Q Consensus 83 ~kIA~vQ~~v~-~------d~~~n~~~i~~~i~~A~~~gadLvVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~ 155 (364)
+|||++|+++. + |+++|++++.+++++|+++|+|||||||++++||.. ..++.++.+++
T Consensus 1 ~~ia~~Q~~~~~~~~~~~~d~~~nl~~~~~~i~~a~~~ga~lvvfPE~~l~g~~~--------------~~~~~~~~l~~ 66 (270)
T cd07571 1 LRVALVQGNIPQDEKWDPEQRQATLDRYLDLTRELADEKPDLVVWPETALPFDLQ--------------RDPDALARLAR 66 (270)
T ss_pred CeEEEEeCCCCcccccCHHHHHHHHHHHHHHHhhcccCCCCEEEecCCcCCcccc--------------cCHHHHHHHHH
Confidence 58999999975 3 789999999999999999999999999999999851 12468899999
Q ss_pred HHHHcCcEEEEeeeeeecC--CeeEEEEEEEcCCCcEEEEeeccccCCCC--CCCccc--------ccccccccCCCCCe
Q 017888 156 VARLLKITIVGGSIPERSG--DRLYNTCCVFGSDGKLIAKHRKIHLFDID--IPGKIT--------FIESKSLTAGETPT 223 (364)
Q Consensus 156 lA~~~~i~Iv~Gs~~~~~~--~~~yNsa~vi~~~G~i~~~y~K~~L~~~~--~P~~~~--------~~E~~~~~~G~~~~ 223 (364)
+|++++++|++|+ .++.+ +++||++++|+++|+++.+|+|+||++++ .|.... ..|..+|.+|++..
T Consensus 67 ~ak~~~i~ii~G~-~~~~~~~~~~~Ns~~~i~~~G~i~~~y~K~~L~p~~e~~p~~~~~~~~~~~~~~e~~~~~~G~~~~ 145 (270)
T cd07571 67 AARAVGAPLLTGA-PRREPGGGRYYNSALLLDPGGGILGRYDKHHLVPFGEYVPLRDLLRFLGLLFDLPMGDFSPGTGPQ 145 (270)
T ss_pred HHHhcCCeEEEee-eeeccCCCceEEEEEEECCCCCCcCcEeeeeccCCCCCcCcHHHHHHHHHhcccccCCCCCCCCCC
Confidence 9999999999994 45444 48999999999999999999999998754 121111 13677899999999
Q ss_pred EEecCC-eeEEEEEeccCcccHHHHHHHhCCceEEEEeCCCCC---CCChhHHHHHHHHHHHhcCcEEEEecCCCCCCCC
Q 017888 224 IVDTDV-GRIGIGICYDIRFQELAMIYGARGAHLICYPGAFNM---TTGPLHWELLQRARATDNQLYVATCSPARDEGAG 299 (364)
Q Consensus 224 vf~~~~-~rigv~IC~D~~fpe~~r~~~~~Gadlil~ps~~~~---~~~~~~~~~~~~~rA~en~~~vv~~n~~g~~~~~ 299 (364)
+|++++ +|+|++||||.+|||.++.++++|||++++|+++.+ .....+|..++++||+||+++|++||+.
T Consensus 146 vf~~~~~~r~g~~IC~D~~fpe~~r~~~~~ga~iil~ps~~~~~~~~~~~~~~~~~~~arA~en~~~vv~~n~~------ 219 (270)
T cd07571 146 PLLLGGGVRVGPLICYESIFPELVRDAVRQGADLLVNITNDAWFGDSAGPYQHLAMARLRAIETGRPLVRAANT------ 219 (270)
T ss_pred ccccCCCceEEEEEEeeeeChHHHHhhcccCCCEEEEcCcccccCCCcchHHHHHHHHHHHHHhCCCEEEEcCC------
Confidence 999999 999999999999999999999999999999997332 2244567778899999999999999875
Q ss_pred eeeeeEeEEECCCCCEeEeCC-CCCcEEEEEEchhh
Q 017888 300 YVAWGHSTLVGPFGEVLATTE-HAEDIIIAEIDYSI 334 (364)
Q Consensus 300 ~~~~G~S~Ii~p~G~il~~~~-~~e~vl~~~ldl~~ 334 (364)
|.|+|++|+|+++++++ ++++++++++|++.
T Consensus 220 ----G~S~ivdp~G~ii~~~~~~~e~~~~~~i~~~~ 251 (270)
T cd07571 220 ----GISAVIDPDGRIVARLPLFEAGVLVAEVPLRT 251 (270)
T ss_pred ----eeeEEECCCCcEEeecCCCcceEEEEEeccCC
Confidence 78999999999999986 68999999999876
No 38
>PLN02339 NAD+ synthase (glutamine-hydrolysing)
Probab=100.00 E-value=1.1e-39 Score=339.27 Aligned_cols=256 Identities=17% Similarity=0.166 Sum_probs=203.5
Q ss_pred CceEEEEEecccc-cCHHHHHHHHHHHHHHHHHCCCcEEEcCCCCCCCCCCCCccchhhhhccCCCCchHHHHHHHHHHH
Q 017888 81 AKFKVGLCQLSVT-ADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARL 159 (364)
Q Consensus 81 ~~~kIA~vQ~~v~-~d~~~n~~~i~~~i~~A~~~gadLvVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~ 159 (364)
+.||||++|+++. +|++.|++++.+.+++|+++|||||||||++++||.+.++....+.+.. ..+.++.+.+.+++
T Consensus 2 ~~mrIAlaQl~~~~gD~~~N~~~I~~~I~~A~~~gAdLvVfPEL~lTGY~~~Dl~~~~~~~~~---~~~~L~~La~~a~~ 78 (700)
T PLN02339 2 RLLKVATCNLNQWAMDFDGNLKRIKESIAEAKAAGAVYRVGPELEITGYGCEDHFLELDTVTH---SWECLAEILVGDLT 78 (700)
T ss_pred ceEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEcCCCccCCCChHHHhhChhHHHH---HHHHHHHHHhhccc
Confidence 3699999999987 8999999999999999999999999999999999987654322222210 01344444444456
Q ss_pred cCcEEEEeeeeeecCCeeEEEEEEEcCCCcEEEEeeccccCCCCCCCcccccccccccCCCC------------------
Q 017888 160 LKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGET------------------ 221 (364)
Q Consensus 160 ~~i~Iv~Gs~~~~~~~~~yNsa~vi~~~G~i~~~y~K~~L~~~~~P~~~~~~E~~~~~~G~~------------------ 221 (364)
+++.|++| +++..++++||+++++. +|++++.|+|.||+. +..|.|+++|++|+.
T Consensus 79 ~~i~vvvG-~p~~~~~~lYN~a~vi~-~GkIlg~y~K~hLpn-----y~~f~E~r~F~pG~~~~~~~~~~l~~~~~~~~g 151 (700)
T PLN02339 79 DGILCDIG-MPVIHGGVRYNCRVFCL-NRKILLIRPKMWLAN-----DGNYRELRWFTAWKHKKKVEDFQLPEEIAEATS 151 (700)
T ss_pred CCeEEEEe-eeEEECCeEEEEEEEEe-CCEEEEEEecccCCC-----CCccccccccccCccCCcceeeccccchhhccC
Confidence 89999999 67777788999999995 899999999999954 447899999999852
Q ss_pred -------CeEEecCCeeEEEEEeccCcccHHHHH-HHhCCceEEEEeCCCCCCCCh--hHHHHHHHHHHHhcCcEEEEec
Q 017888 222 -------PTIVDTDVGRIGIGICYDIRFQELAMI-YGARGAHLICYPGAFNMTTGP--LHWELLQRARATDNQLYVATCS 291 (364)
Q Consensus 222 -------~~vf~~~~~rigv~IC~D~~fpe~~r~-~~~~Gadlil~ps~~~~~~~~--~~~~~~~~~rA~en~~~vv~~n 291 (364)
..+|++++.+||+.||||+|||+..+. +++.|||+|++|+++++..++ .+++.+....+..++.| ++||
T Consensus 152 ~~~vpfg~~~~~~~g~~iGv~ICeDlwfPe~p~~~lAl~GAdII~n~sas~~~~gK~~~R~rai~n~sa~~~~~y-vyaN 230 (700)
T PLN02339 152 QKSVPFGDGYLQFLDTAVAAETCEELFTPQAPHIDLALNGVEIISNGSGSHHQLRKLNTRLDLIRSATHKCGGVY-LYAN 230 (700)
T ss_pred CceeccCcceeecCCeEEEEEEecccCCChHHHHHHHHcCCeEEEECCCChhhcCCHHHHHHHHHHHHHHhCCcE-EEEc
Confidence 124456678999999999999999995 999999999999987665442 34555555666666888 5788
Q ss_pred CCCCCCCCeeeeeEeEEECCCCCEeEeCC-C---CCcEEEEEEchhhHHHHHhcCCCcccc
Q 017888 292 PARDEGAGYVAWGHSTLVGPFGEVLATTE-H---AEDIIIAEIDYSILELRRTSLPLSKQR 348 (364)
Q Consensus 292 ~~g~~~~~~~~~G~S~Ii~p~G~il~~~~-~---~e~vl~~~ldl~~~~~~r~~~~~~~~~ 348 (364)
.+|...+...|+|+|+| .|+|+++++++ + ++.++++++|++.++..|...|.+.++
T Consensus 231 ~~Ge~~~~lvf~G~S~I-~~~G~ilaea~~F~~~~~~vi~adIDl~~l~~~R~~~~~~~~~ 290 (700)
T PLN02339 231 QRGCDGGRLYYDGCACI-VVNGEVVAQGSQFSLQDVEVVTACVDLDAVVSFRGSISSFREQ 290 (700)
T ss_pred CCccCCCceEEcCceEE-eCCCcEeEecCCcccCCceEEEEEEehHHhhhHhhcCCchhhh
Confidence 88755556888899988 57999999985 3 567999999999999888888777654
No 39
>cd07566 ScNTA1_like Saccharomyces cerevisiae N-terminal amidase NTA1, and related proteins (class 3 nitrilases). Saccharomyces cerevisiae NTA1 functions in the N-end rule protein degradation pathway. It specifically deaminates the N-terminal asparagine and glutamine residues of substrates of this pathway, to aspartate and glutamate respectively, these latter are the destabilizing residues. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 3.
Probab=100.00 E-value=1.3e-37 Score=294.74 Aligned_cols=219 Identities=25% Similarity=0.327 Sum_probs=170.4
Q ss_pred EEEEEecccc-cCHHHHHHHHHHHHHHHHH----CCCcEEEcCCCCCCCCCCCCccc---hhhhhccCCCCchHHHHHHH
Q 017888 84 KVGLCQLSVT-ADKERNIAHARRAIEEAAE----KGAKLILLPEIWNSPYSHDSFPV---YAEDIDAGGDASPSTAMLSE 155 (364)
Q Consensus 84 kIA~vQ~~v~-~d~~~n~~~i~~~i~~A~~----~gadLvVfPE~~l~gy~~~~~~~---~~~~~~~~~~~~~~~~~l~~ 155 (364)
|||++|+++. +|+++|++++.+++++|++ +|+|||||||++++||...+... +++.. ..++..+.+++
T Consensus 1 rIA~vQ~~~~~~d~~~Nl~~~~~~i~~A~~~~~~~gadLIVfPEl~ltGY~~~~~~~~~~~ae~~----~~g~~~~~l~~ 76 (295)
T cd07566 1 RIACLQLNPQIGQVEENLSRAWELLDKTKKRAKLKKPDILVLPELALTGYNFHSLEHIKPYLEPT----TSGPSFEWARE 76 (295)
T ss_pred CEEEEECCCccCCHHHHHHHHHHHHHHHHhhccCCCCcEEEcCCCCcccCCcccHHHHHHHHHhc----CCCHHHHHHHH
Confidence 6999999976 8999999999999999998 89999999999999997654322 22211 13578899999
Q ss_pred HHHHcCcEEEEeeeeeecC---CeeEEEEEEEcCCCcEEEEeeccccCCCCCCCccccccc-cccc------CCCCCeE-
Q 017888 156 VARLLKITIVGGSIPERSG---DRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIES-KSLT------AGETPTI- 224 (364)
Q Consensus 156 lA~~~~i~Iv~Gs~~~~~~---~~~yNsa~vi~~~G~i~~~y~K~~L~~~~~P~~~~~~E~-~~~~------~G~~~~v- 224 (364)
+|++++++|++| ++++.+ +++|||+++|+++|+++++|+|+||++.+.+ +. +.|. .++. +|++...
T Consensus 77 lAk~~~i~Iv~G-~~e~~~~~~~~~yNta~vi~~~G~ii~~YrK~HL~~~~~~-~~-~~e~~~~~~~~~~~~~G~~~~~~ 153 (295)
T cd07566 77 VAKKFNCHVVIG-YPEKVDESSPKLYNSALVVDPEGEVVFNYRKSFLYYTDEE-WG-CEENPGGFQTFPLPFAKDDDFDG 153 (295)
T ss_pred HHHhcCCEEEEe-eeEecCCCCCceEEEEEEEcCCCeEEEEEeccccCCCCcc-cc-cCCCCCccccccccccccccccc
Confidence 999999999999 555543 4899999999999999999999999875411 10 1122 1222 7776442
Q ss_pred -EecCCeeEEEEEeccCc---c--c----HHHHHHHhCCceEEEEeCCCCCCCCh--------hHH---HHHHHHHHH--
Q 017888 225 -VDTDVGRIGIGICYDIR---F--Q----ELAMIYGARGAHLICYPGAFNMTTGP--------LHW---ELLQRARAT-- 281 (364)
Q Consensus 225 -f~~~~~rigv~IC~D~~---f--p----e~~r~~~~~Gadlil~ps~~~~~~~~--------~~~---~~~~~~rA~-- 281 (364)
+.+.++|||++||||++ | | |++|.++++|||+|++|++|+...+. .+| ....++||+
T Consensus 154 ~~~~~~~kiG~~ICyDl~~~rF~~P~~~~E~~r~la~~Gadii~~paaw~~~~~~~~~~~~~~~~~~~~~~~~~~ra~~~ 233 (295)
T cd07566 154 GSVDVTLKTSIGICMDLNPYKFEAPFTDFEFATHVLDNGTELIICPMAWLHSLSPTELTVLPQEPDTETVSYWLQRFEPL 233 (295)
T ss_pred cccCCcceeEEEEEecCCcccccCCcchHHHHHHHHHCCCCEEEEechhcCCCCcccccccCCCcchhHHHHHHHhhccc
Confidence 33458899999999996 7 5 99999999999999999999754321 133 233455554
Q ss_pred ----hcCcEEEEecCCCCCCCCeeeeeEeEEEC
Q 017888 282 ----DNQLYVATCSPARDEGAGYVAWGHSTLVG 310 (364)
Q Consensus 282 ----en~~~vv~~n~~g~~~~~~~~~G~S~Ii~ 310 (364)
||++||+.||.+|.. .+..|.|+|+|+.
T Consensus 234 ~a~~eN~~~vv~~Nr~G~~-~~~~f~G~S~i~~ 265 (295)
T cd07566 234 RAEPLEGTQVVFCNRIGTE-NDTLYAGSSAVIG 265 (295)
T ss_pred ccCCCCceEEEEEeccCcc-CCceecCccceee
Confidence 999999999999865 5788999999886
No 40
>PRK00302 lnt apolipoprotein N-acyltransferase; Reviewed
Probab=100.00 E-value=3.9e-35 Score=297.84 Aligned_cols=228 Identities=20% Similarity=0.272 Sum_probs=186.6
Q ss_pred CceEEEEEeccccc-------CHHHHHHHHHHHHHHHHHCCCcEEEcCCCCCCCCCCCCccchhhhhccCCCCchHHHHH
Q 017888 81 AKFKVGLCQLSVTA-------DKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAML 153 (364)
Q Consensus 81 ~~~kIA~vQ~~v~~-------d~~~n~~~i~~~i~~A~~~gadLvVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l 153 (364)
+++|||++|.++.. +.++|++++.+.+++ +++|+|||||||.+++++..+. ..+..+.+
T Consensus 218 ~~~~ValvQ~ni~~~~k~~~~~~~~~l~~~~~~~~~-~~~~~dlvV~PE~a~p~~~~~~-------------~~~~~~~l 283 (505)
T PRK00302 218 PALKVALVQGNIPQSLKWDPAGLEATLQKYLDLSRP-ALGPADLIIWPETAIPFLLEDL-------------PQAFLKAL 283 (505)
T ss_pred CCcEEEEECCCCChhcccCHHHHHHHHHHHHHHHhc-ccCCCCEEEeCCcccccccccc-------------cHHHHHHH
Confidence 35899999999753 467889999998884 4679999999999987762110 12466789
Q ss_pred HHHHHHcCcEEEEeeeeeec--CC-eeEEEEEEEcCCCcEEEEeeccccCCCC--CCCcccc--------cccccccCCC
Q 017888 154 SEVARLLKITIVGGSIPERS--GD-RLYNTCCVFGSDGKLIAKHRKIHLFDID--IPGKITF--------IESKSLTAGE 220 (364)
Q Consensus 154 ~~lA~~~~i~Iv~Gs~~~~~--~~-~~yNsa~vi~~~G~i~~~y~K~~L~~~~--~P~~~~~--------~E~~~~~~G~ 220 (364)
+++|+++++.+++|.....+ ++ ++||+++++++ |+++.+|+|+||+||+ +|.+..+ .+..+|++|+
T Consensus 284 ~~~a~~~~~~il~G~~~~~~~~~~~~~yNsa~~i~~-g~~~~~Y~K~~LvPfgE~~P~~~~~~~~~~~~~~~~~~~~~G~ 362 (505)
T PRK00302 284 DDLAREKGSALITGAPRAENKQGRYDYYNSIYVLGP-YGILNRYDKHHLVPFGEYVPLESLLRPLAPFFNLPMGDFSRGP 362 (505)
T ss_pred HHHHHhCCCEEEEecccccCCCCCCceeeEEEEECC-CCCcCcccccccCCCcCCCChHHHHHHHHHhcCCCcCCCCCCC
Confidence 99999999999999543222 23 69999999998 7899999999998876 4533111 1123689998
Q ss_pred -CCeEEecCCeeEEEEEeccCcccHHHHHHHhCCceEEEEeCC--C-CCCCChhHHHHHHHHHHHhcCcEEEEecCCCCC
Q 017888 221 -TPTIVDTDVGRIGIGICYDIRFQELAMIYGARGAHLICYPGA--F-NMTTGPLHWELLQRARATDNQLYVATCSPARDE 296 (364)
Q Consensus 221 -~~~vf~~~~~rigv~IC~D~~fpe~~r~~~~~Gadlil~ps~--~-~~~~~~~~~~~~~~~rA~en~~~vv~~n~~g~~ 296 (364)
+..+++++++|+|++||||..|||..|.++++|+|+++++++ | ..+.++.+|..+++.||+||++++++++++
T Consensus 363 ~~~~v~~~~~~~ig~~ICyE~~fpe~~r~~~~~ga~~lv~~snd~Wf~~~~~~~qh~~~~~~RAiEng~~vvra~n~--- 439 (505)
T PRK00302 363 YVQPPLLAKGLKLAPLICYEIIFPEEVRANVRQGADLLLNISNDAWFGDSIGPYQHFQMARMRALELGRPLIRATNT--- 439 (505)
T ss_pred CCCCCcccCCceEEEEEeehhcChHHHHhhccCCCCEEEEccchhhcCCCCchHHHHHHHHHHHHHhCCceEEecCc---
Confidence 788999999999999999999999999999999999999998 3 233446678888999999999999999876
Q ss_pred CCCeeeeeEeEEECCCCCEeEeCC-CCCcEEEEEEchh
Q 017888 297 GAGYVAWGHSTLVGPFGEVLATTE-HAEDIIIAEIDYS 333 (364)
Q Consensus 297 ~~~~~~~G~S~Ii~p~G~il~~~~-~~e~vl~~~ldl~ 333 (364)
|.|+++||+|+++++.+ ++++++++++|+.
T Consensus 440 -------G~Saiidp~G~i~~~~~~~~~~~l~~~i~~~ 470 (505)
T PRK00302 440 -------GITAVIDPLGRIIAQLPQFTEGVLDGTVPPT 470 (505)
T ss_pred -------eeeEEECCCCCEeeecCCCceeEEEEEeccC
Confidence 78999999999999986 7899999999985
No 41
>TIGR00546 lnt apolipoprotein N-acyltransferase. This enzyme transfers the acyl group to lipoproteins in the lgt/lsp/lnt system which is found broadly in bacteria but not in archaea. This model represents one component of the "lipoprotein lgt/lsp/lnt system" genome property.
Probab=100.00 E-value=1.1e-34 Score=285.66 Aligned_cols=211 Identities=22% Similarity=0.316 Sum_probs=174.3
Q ss_pred CceEEEEEeccccc-------CHHHHHHHHHHHHHHHHHCCCcEEEcCCCCCCCCCCCCccchhhhhccCCCCchHHHHH
Q 017888 81 AKFKVGLCQLSVTA-------DKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAML 153 (364)
Q Consensus 81 ~~~kIA~vQ~~v~~-------d~~~n~~~i~~~i~~A~~~gadLvVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l 153 (364)
+++|||++|.++.. +.++|++++.+++++|.+ ++|||||||.++++|..+. ..+..+.+
T Consensus 158 ~~~~ValvQ~n~~~~~k~~~~~~~~~~~~~~~~~~~a~~-~~dlVv~PE~a~~~~~~~~-------------~~~~~~~l 223 (391)
T TIGR00546 158 PTLNVALVQPNIPQDLKFDSEGLEAILEILTSLTKQAVE-KPDLVVWPETAFPFDLENS-------------PQKLADRL 223 (391)
T ss_pred CcceEEEEcCCCCcccccChhhHHHHHHHHHHHHhccCC-CCCEEEcCccccccchhhC-------------cHHHHHHH
Confidence 35899999999763 467899999999998877 9999999999999874221 01267789
Q ss_pred HHHHHHcCcEEEEeeeeeecCC--eeEEEEEEEcCCCcEEEEeeccccCCCC--CCCcccc------cc---cccccCCC
Q 017888 154 SEVARLLKITIVGGSIPERSGD--RLYNTCCVFGSDGKLIAKHRKIHLFDID--IPGKITF------IE---SKSLTAGE 220 (364)
Q Consensus 154 ~~lA~~~~i~Iv~Gs~~~~~~~--~~yNsa~vi~~~G~i~~~y~K~~L~~~~--~P~~~~~------~E---~~~~~~G~ 220 (364)
+++|+++++.|++|.....+++ ++||++++++++|+++.+|+|+||+||+ +|-...+ .+ ..+|++|+
T Consensus 224 ~~~a~~~~~~ii~G~~~~~~~~~~~~yNsa~~~~~~G~~~~~Y~K~~LvPfgEyiP~~~~~~~~~~~~~~~~~~~~~~G~ 303 (391)
T TIGR00546 224 KLLVLSKGIPILIGAPDAVPGGPYHYYNSAYLVDPGGEVVQRYDKVKLVPFGEYIPLGFLFKWLSKLFFLLSQEDFSRGP 303 (391)
T ss_pred HHHHHhCCCEEEEecccccCCCCCceeeEEEEECCCCCccccccceeccCCcCCCChHHHHHHHHHHhccCCccCCCCCC
Confidence 9999999999999954332233 7999999999999999999999999876 4522111 01 24689999
Q ss_pred CCeEEecCCeeEEEEEeccCcccHHHHHHHhCCceEEEEeCCCCC---CCChhHHHHHHHHHHHhcCcEEEEecCCCCCC
Q 017888 221 TPTIVDTDVGRIGIGICYDIRFQELAMIYGARGAHLICYPGAFNM---TTGPLHWELLQRARATDNQLYVATCSPARDEG 297 (364)
Q Consensus 221 ~~~vf~~~~~rigv~IC~D~~fpe~~r~~~~~Gadlil~ps~~~~---~~~~~~~~~~~~~rA~en~~~vv~~n~~g~~~ 297 (364)
+..+++++++|+|++||||..|||+.|.++++|||+++++++..+ +.+..+|..+.+.||+||+++++++|++
T Consensus 304 ~~~~~~~~~~~~g~~ICyE~~fp~~~r~~~~~Ga~~lv~~snd~wf~~s~~~~qh~~~~~~RAiEn~~~vvra~n~---- 379 (391)
T TIGR00546 304 GPQVLKLPGGKIAPLICYESIFPDLVRASARQGAELLVNLTNDAWFGDSSGPWQHFALARFRAIENGRPLVRATNT---- 379 (391)
T ss_pred CCCCCcCCCceeeeeEEeehhchHHHHhhccCCCCEEEEecchhhcCCCCChHHHHHHHHHHHHHhCCcEEEecCC----
Confidence 999999999999999999999999999999999999999998432 2356678889999999999999999987
Q ss_pred CCeeeeeEeEEECCCCCE
Q 017888 298 AGYVAWGHSTLVGPFGEV 315 (364)
Q Consensus 298 ~~~~~~G~S~Ii~p~G~i 315 (364)
|.|+++||+|++
T Consensus 380 ------G~S~vidp~G~i 391 (391)
T TIGR00546 380 ------GISAVIDPRGRT 391 (391)
T ss_pred ------ceeEEECCCCCC
Confidence 789999999985
No 42
>KOG0805 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism]
Probab=100.00 E-value=6.1e-34 Score=250.95 Aligned_cols=267 Identities=27% Similarity=0.413 Sum_probs=224.3
Q ss_pred CCCceEEEEEecccc-cCHHHHHHHHHHHHHHHHHCCCcEEEcCCCCCCCCCCCCc-------------cchhhhh-ccC
Q 017888 79 PVAKFKVGLCQLSVT-ADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSF-------------PVYAEDI-DAG 143 (364)
Q Consensus 79 ~~~~~kIA~vQ~~v~-~d~~~n~~~i~~~i~~A~~~gadLvVfPE~~l~gy~~~~~-------------~~~~~~~-~~~ 143 (364)
++...||+++|.... .|....++++++.+.+|+..|+.||||||.++.||+-..- .++.... .+-
T Consensus 14 ~~s~~~v~ivQ~~t~~~dtpaTL~K~~~~~~Eaa~~Ga~LV~fPEAfiGGYPrg~~Fg~~~G~r~~eGR~ef~kY~a~AI 93 (337)
T KOG0805|consen 14 SSSIVRVTIVQASTVYNDTPATLDKAEKYIVEAASKGAELVLFPEAFIGGYPRGFRFGLAVGVRNEEGRDEFRKYHASAI 93 (337)
T ss_pred cccceEEEEEEcccCCCCCHHHHHHHHHHHHHHhcCCceEEEeehHhccCCCCcceeeEEEeecchhhhHHHHHHHHHhh
Confidence 334589999999865 8888999999999999999999999999999999985321 1111111 112
Q ss_pred CCCchHHHHHHHHHHHcCcEEEEeeeeeecCCeeEEEEEEEcCCCcEEEEeeccccCCCCCCCccccccccccc--CCCC
Q 017888 144 GDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLT--AGET 221 (364)
Q Consensus 144 ~~~~~~~~~l~~lA~~~~i~Iv~Gs~~~~~~~~~yNsa~vi~~~G~i~~~y~K~~L~~~~~P~~~~~~E~~~~~--~G~~ 221 (364)
...++..++|..+|++++++++.| ..++++-.+|-++++|+|.|..+++|||..+.. .|+-.+- .|++
T Consensus 94 ev~gpEv~~l~~la~~~~v~lv~G-~iEreg~TLYCt~~f~~p~g~~lGKHRKlmPTa---------lERciWGqGDGST 163 (337)
T KOG0805|consen 94 EVPGPEVERLAELAKKNNVYLVMG-AIEREGYTLYCTVLFFSPQGQFLGKHRKLMPTA---------LERCIWGQGDGST 163 (337)
T ss_pred cCCChHHHHHHHHhhcCCeEEEEE-EEeccccEEEEEEEEECCCccccccccccccch---------hhheeeccCCCcc
Confidence 356899999999999999999999 679999999999999999999999999987533 4554444 4567
Q ss_pred CeEEecCCeeEEEEEeccCcccHHHHHHHhCCceEEEEeCCCCCCCChhHHHHHHHHHHHhcCcEEEEecCCC-------
Q 017888 222 PTIVDTDVGRIGIGICYDIRFQELAMIYGARGAHLICYPGAFNMTTGPLHWELLQRARATDNQLYVATCSPAR------- 294 (364)
Q Consensus 222 ~~vf~~~~~rigv~IC~D~~fpe~~r~~~~~Gadlil~ps~~~~~~~~~~~~~~~~~rA~en~~~vv~~n~~g------- 294 (364)
++||+++.||||-+||||.+.|-+...+..+|.+|.+.|++- ....|..-++..|.|.+|||+.++..-
T Consensus 164 iPV~dT~iGKIG~AICWEN~MPl~R~alY~KgieIycAPT~D----~r~~w~~sM~~IAlEG~cFvlSA~QF~k~~d~p~ 239 (337)
T KOG0805|consen 164 IPVYDTPIGKIGAAICWENRMPLYRTALYAKGIEIYCAPTAD----GRKEWQSSMLHIALEGGCFVLSACQFCKRKDFPD 239 (337)
T ss_pred cceeecccchhceeeecccccHHHHHHHHhcCcEEEeccCCC----CcHHHHHhhhheeecCceEEEEhhhhcccccCCC
Confidence 999999999999999999999999999999999999999973 446799999999999999999886321
Q ss_pred ------------CCCCCeeeeeEeEEECCCCCEeEeCC-CCCcEEEEEEchhhHHHHHhcC-CCccccccccchhhhhh
Q 017888 295 ------------DEGAGYVAWGHSTLVGPFGEVLATTE-HAEDIIIAEIDYSILELRRTSL-PLSKQRRGDLYQLVDIQ 359 (364)
Q Consensus 295 ------------~~~~~~~~~G~S~Ii~p~G~il~~~~-~~e~vl~~~ldl~~~~~~r~~~-~~~~~~r~~ly~~~~~~ 359 (364)
...+.....|+|.|++|-|.+++.-. ..|+++++++|+..+..+|-.+ +++++.|||+|+|....
T Consensus 240 ~peyl~~~~~~~k~pD~vv~~GGSviI~PlG~VlagP~~~~EgL~tadldl~dIA~ak~d~DvVGHYsRpDVFqLtVnE 318 (337)
T KOG0805|consen 240 HPDYLFTDWYDDKEPDSVVSQGGSVIISPLGQVLAGPNFESEGLITADLDLGDIARAKLDFDVVGHYSRPDVFQLTVNE 318 (337)
T ss_pred CchhhcccchhccCCCcceecCCcEEEccccceecCCCcCccceEEEeccchhhhhhccccccccccCCCceEEEEecc
Confidence 12345678899999999999999875 7899999999999999998776 77999999999997663
No 43
>PF00795 CN_hydrolase: Carbon-nitrogen hydrolase The Prosite family is specific to nitrilases The Prosite family is specific to UPF0012; InterPro: IPR003010 This family contains nitrilases that break carbon-nitrogen bonds and appear to be involved in the reduction of organic nitrogen compounds and ammonia production []. They all have distinct substrate specificity and include cyanide hydratases, aliphatic amidases, beta-alanine synthase, and a few other proteins with unknown molecular function. Sequence conservation over the entire length, as well as the similarity in the reactions catalyzed by the known enzymes in this family, points to a common catalytic mechanism. They have an invariant cysteine that is part of the catalytic site in nitrilases. Another highly conserved motif includes an invariant glutamic acid that might also be involved in catalysis [].; GO: 0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, 0006807 nitrogen compound metabolic process; PDB: 2E2L_D 2E2K_D 2DYV_A 2DYU_B 3KLC_B 3IW3_A 3KI8_A 3IVZ_A 1EMS_A 2GGK_B ....
Probab=99.98 E-value=5.4e-32 Score=239.34 Aligned_cols=168 Identities=39% Similarity=0.675 Sum_probs=141.9
Q ss_pred EEEEEeccc---ccCHHHHHHHHHHHHHHHHHCCCcEEEcCCCCCCCCCC-----CCcc---chhhhhccCCCCchHHHH
Q 017888 84 KVGLCQLSV---TADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSH-----DSFP---VYAEDIDAGGDASPSTAM 152 (364)
Q Consensus 84 kIA~vQ~~v---~~d~~~n~~~i~~~i~~A~~~gadLvVfPE~~l~gy~~-----~~~~---~~~~~~~~~~~~~~~~~~ 152 (364)
|||++|+++ ..|.++|++++.+++++|+++|+|||||||++++||.. .... .+.+.+ .++.++.
T Consensus 1 ~VA~~Q~~~~~~~~~~~~n~~~i~~~~~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~ 75 (186)
T PF00795_consen 1 RVALVQLNIDQSWGDPEENLKKILSLIEEAARQGADLVVFPEMALPGYPNPGWCEDDFADLDEFAEPL-----DGPYLER 75 (186)
T ss_dssp EEEEEEB-B-SSTTHHHHHHHHHHHHHHHHHHTTESEEEEETTTTTCS-GGGSGHSSHHHHHHHHBHS-----TSHHHHH
T ss_pred CEEEEECCccCccCCHHHHHHHHHHHHHHHHHCCCCEEEcCcchhcccccccccccccchhhhhcccc-----ccHHHHH
Confidence 799999995 48999999999999999999999999999999999932 2211 122221 1579999
Q ss_pred HHHHHHHcCcEEEEeeeeeecCCeeEEEEEEEcCCCcEEEEeeccccCCCCCCCccccc-ccccccCC-CCCeEEecC--
Q 017888 153 LSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFI-ESKSLTAG-ETPTIVDTD-- 228 (364)
Q Consensus 153 l~~lA~~~~i~Iv~Gs~~~~~~~~~yNsa~vi~~~G~i~~~y~K~~L~~~~~P~~~~~~-E~~~~~~G-~~~~vf~~~-- 228 (364)
+.++|+++++++++| +++.+++++||++++|+++|+++++|+|+||+|++ .+. |..+|.+| ....+|+++
T Consensus 76 l~~~a~~~~~~i~~G-~~~~~~~~~~N~~~~~~~~g~~~~~y~K~~lvpf~-----~~~P~~~~~~~g~~~~~~~~~~~~ 149 (186)
T PF00795_consen 76 LAELAKENGITIVAG-IPERDDGGLYNSAVVIDPDGEILGRYRKIHLVPFG-----EYIPERRYFSPGGDPFPVFETPVF 149 (186)
T ss_dssp HHHHHHHHTSEEEEE-EEEEETTEEEEEEEEEETTSEEEEEEEGSSTCSTT-----TTTTHHHHSBEESSESEEEEETET
T ss_pred HHHHHHhcCCccccc-ccccccccccceeEEEEeeecccccccceeeeccc-----cccccceeeeeccceeeeeeccee
Confidence 999999999999999 77888899999999999999999999999998765 344 77788887 456676664
Q ss_pred ---CeeEEEEEeccCcccHHHHHHHhCCceEEEEeCC
Q 017888 229 ---VGRIGIGICYDIRFQELAMIYGARGAHLICYPGA 262 (364)
Q Consensus 229 ---~~rigv~IC~D~~fpe~~r~~~~~Gadlil~ps~ 262 (364)
++|+|++||||.+||++++.++++|||++++|+|
T Consensus 150 ~~~g~~ig~~ICyd~~fp~~~~~~~~~ga~il~~~sa 186 (186)
T PF00795_consen 150 DFGGGRIGVLICYDLRFPELVRELAKQGADILINPSA 186 (186)
T ss_dssp EETTEEEEEEEGGGGGSHHHHHHHHHTTESEEEEEE-
T ss_pred eeccceEEEEEEcccCChHHHHHHHHCCCCEEEeCCC
Confidence 6999999999999999999999999999999985
No 44
>PRK12291 apolipoprotein N-acyltransferase; Reviewed
Probab=99.97 E-value=4e-30 Score=254.12 Aligned_cols=198 Identities=20% Similarity=0.241 Sum_probs=160.2
Q ss_pred eEEEEEecccccC-------HHHHHHHHHHHHHHHHHCCCcEEEcCCCCCCCCCCCCccchhhhhccCCCCchHHHHHHH
Q 017888 83 FKVGLCQLSVTAD-------KERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSE 155 (364)
Q Consensus 83 ~kIA~vQ~~v~~d-------~~~n~~~i~~~i~~A~~~gadLvVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~ 155 (364)
.+|+++|+|+..+ .++|++++.+.+++|.+.++|+|||||.+++.+.... .+..+.+++
T Consensus 195 ~~V~lVQ~ni~q~~Kw~~~~~~~~l~~~~~l~~~a~~~~~dLVVwPEta~p~~~~~~--------------~~~~~~l~~ 260 (418)
T PRK12291 195 VNIELVNTNIPQDLKWDKENLKSIINENLKEIDKAIDEKKDLIVLPETAFPLALNNS--------------PILLDKLKE 260 (418)
T ss_pred CEEEEEeCCCCcccccChhhHHHHHHHHHHHHHHHhccCCCEEEeCCcccccchhhC--------------HHHHHHHHH
Confidence 4999999998643 3678899999999998999999999999987652111 135566766
Q ss_pred HHHHcCcEEEEeeeeeecCCeeEEEEEEEcCCCcEEEEeeccccCCCC--CCCcc---------cccccccccCCCCCeE
Q 017888 156 VARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDID--IPGKI---------TFIESKSLTAGETPTI 224 (364)
Q Consensus 156 lA~~~~i~Iv~Gs~~~~~~~~~yNsa~vi~~~G~i~~~y~K~~L~~~~--~P~~~---------~~~E~~~~~~G~~~~v 224 (364)
++ .++.+++|+ ...+++++|||++++++ |+ +..|+|+||+||+ +|-.. .+.|..+|++|++..+
T Consensus 261 ~~--~~~~ii~G~-~~~~~~~~yNS~~vi~~-G~-~~~Y~K~hLVPFGEyiP~~~~l~~~~~~~~~~~~~~f~~G~~~~~ 335 (418)
T PRK12291 261 LS--HKITIITGA-LRVEDGHIYNSTYIFSK-GN-VQIADKVILVPFGEEIPLPKFFKKPINKLFFGGASDFSKASKFSD 335 (418)
T ss_pred hc--cCCcEEEee-eeccCCceEEEEEEECC-CC-cceecccCCCCCcccCccHHHHHhhhHHHhccCcccCCCCCCCcc
Confidence 64 578999994 45555689999999974 87 6899999999886 55211 1345668999999999
Q ss_pred EecCCeeEEEEEeccCcccHHHHHHHhCCceEEEEeCCCCC---CCChhHHHHHHHHHHHhcCcEEEEecCCCCCCCCee
Q 017888 225 VDTDVGRIGIGICYDIRFQELAMIYGARGAHLICYPGAFNM---TTGPLHWELLQRARATDNQLYVATCSPARDEGAGYV 301 (364)
Q Consensus 225 f~~~~~rigv~IC~D~~fpe~~r~~~~~Gadlil~ps~~~~---~~~~~~~~~~~~~rA~en~~~vv~~n~~g~~~~~~~ 301 (364)
+++++.|+|++||||.+|||..+ +|+|++++++|..+ +.++.+|..+++.||+|+|+++++++|+
T Consensus 336 ~~~~g~~ig~lICYE~~Fpel~r----~ga~~Lv~iSNdaWfg~s~~p~~~~~~~r~RAiE~g~pvvratNt-------- 403 (418)
T PRK12291 336 FTLDGVKFRNAICYEATSEELYE----GNPKIVIAISNNAWFVPSIEPTLQKLLLKYYARKYGKTIYHSANG-------- 403 (418)
T ss_pred eeeCCeEEEEEEeeeecchHhhc----cCCCEEEEecccccCCCChhHHHHHHHHHHHHHHhCCcEEEEcCC--------
Confidence 99999999999999999999987 88999999998433 3355678888999999999999999987
Q ss_pred eeeEeEEECCCC
Q 017888 302 AWGHSTLVGPFG 313 (364)
Q Consensus 302 ~~G~S~Ii~p~G 313 (364)
|.|+++||+-
T Consensus 404 --GiSavIdp~~ 413 (418)
T PRK12291 404 --SPSYIITPKL 413 (418)
T ss_pred --ceeEEECcch
Confidence 7899999873
No 45
>KOG0808 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism]
Probab=99.96 E-value=2.1e-28 Score=217.51 Aligned_cols=264 Identities=28% Similarity=0.469 Sum_probs=221.9
Q ss_pred ceEEEEEecccc----c----CHHHHHHHHHHHHHHHHHCCCcEEEcCCCCCCCCCCCC-----ccchhhhhccCCCCch
Q 017888 82 KFKVGLCQLSVT----A----DKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDS-----FPVYAEDIDAGGDASP 148 (364)
Q Consensus 82 ~~kIA~vQ~~v~----~----d~~~n~~~i~~~i~~A~~~gadLvVfPE~~l~gy~~~~-----~~~~~~~~~~~~~~~~ 148 (364)
-+||+++|-.+. . ....--+++...|+.|+..|+++|+|.|.|..+|.+-. +.++++..+ .++
T Consensus 73 ~vrvgliqn~i~lpttapv~eq~~aih~r~kaiieaaa~agvniiclqeawtmpfafctrerlpwtefaesv~----~gp 148 (387)
T KOG0808|consen 73 VVRVGLIQNSIALPTTAPVSEQTRAIHDRLKAIIEAAAVAGVNIICLQEAWTMPFAFCTRERLPWTEFAESVD----TGP 148 (387)
T ss_pred EEEEeeecccccCCCCCcHHHHHHHHHHHHHHHHHHHHhcCccEEEeehhhcCchhhhccccCchhhhccccc----cCc
Confidence 489999998753 2 23455677888899999999999999999998876522 345666654 368
Q ss_pred HHHHHHHHHHHcCcEEEEeeeeeec---CCeeEEEEEEEcCCCcEEEEeeccccCCCCCCCcccccccccccCCC-CCeE
Q 017888 149 STAMLSEVARLLKITIVGGSIPERS---GDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGE-TPTI 224 (364)
Q Consensus 149 ~~~~l~~lA~~~~i~Iv~Gs~~~~~---~~~~yNsa~vi~~~G~i~~~y~K~~L~~~~~P~~~~~~E~~~~~~G~-~~~v 224 (364)
+.+.++++|+++++.||.. +.+++ ++-+.|++++|+.+|.+++++||.|. |-...|.|..++..|+ .-+|
T Consensus 149 tt~flqklakkhdmvivsp-ilerd~ehgdvlwntavvisn~g~vigk~rknhi-----prvgdfnestyymeg~lghpv 222 (387)
T KOG0808|consen 149 TTKFLQKLAKKHDMVIVSP-ILERDIEHGDVLWNTAVVISNNGNVIGKHRKNHI-----PRVGDFNESTYYMEGDLGHPV 222 (387)
T ss_pred hHHHHHHHHhhCCeEEEeh-hhhcccccCceeeeeeEEEccCCceecccccccC-----CcccccCcceeEeecCCCCce
Confidence 9999999999999988877 66765 45699999999999999999999996 6666899999999987 4899
Q ss_pred EecCCeeEEEEEeccCcccHHHHHHHhCCceEEEEeCCCCCCCChhHHHHHHHHHHHhcCcEEEEecCCCCC--------
Q 017888 225 VDTDVGRIGIGICYDIRFQELAMIYGARGAHLICYPGAFNMTTGPLHWELLQRARATDNQLYVATCSPARDE-------- 296 (364)
Q Consensus 225 f~~~~~rigv~IC~D~~fpe~~r~~~~~Gadlil~ps~~~~~~~~~~~~~~~~~rA~en~~~vv~~n~~g~~-------- 296 (364)
|++.+||||+-|||--.+|.-|..+...||+||++|++.-.......|-..++-.|+.|.+|++..|.+|..
T Consensus 223 fet~fgriavnicygrhhplnwlmy~lngaeiifnpsatvgalseplwpiearnaaianh~ft~~inrvgtevfpnefts 302 (387)
T KOG0808|consen 223 FETVFGRIAVNICYGRHHPLNWLMYGLNGAEIIFNPSATVGALSEPLWPIEARNAAIANHYFTGSINRVGTEVFPNEFTS 302 (387)
T ss_pred eeeecceEEEEeeccCCCchhhhhhhccCceEEECCccccccccCccCchhhhhhhhhhceEEEeecccccccCCCcccC
Confidence 999999999999999999999999999999999999985433344578888999999999999999987631
Q ss_pred CCC-------eeeeeEeEEECCCCCEeEeC-CCCCcEEEEEEchhhHHHHHhcCCCccccccccchh
Q 017888 297 GAG-------YVAWGHSTLVGPFGEVLATT-EHAEDIIIAEIDYSILELRRTSLPLSKQRRGDLYQL 355 (364)
Q Consensus 297 ~~~-------~~~~G~S~Ii~p~G~il~~~-~~~e~vl~~~ldl~~~~~~r~~~~~~~~~r~~ly~~ 355 (364)
++| -.|+|.|.+..|++..--.+ ...+|++++++|++..++....|.|....|-|+|.-
T Consensus 303 gdgkpah~dfghfygssy~aapd~srtp~lsr~rdgllia~ldlnlcrq~kd~wgfrmt~ryemya~ 369 (387)
T KOG0808|consen 303 GDGKPAHNDFGHFYGSSYFAAPDASRTPSLSRYRDGLLIADLDLNLCRQYKDKWGFRMTARYEMYAD 369 (387)
T ss_pred CCCCcccccccccccceeeecCCCCCCccccccccceEEeecchHHHHHhhhhhcceehhhHHHHHH
Confidence 111 36899999999999876554 488999999999999999999999999888888854
No 46
>COG0815 Lnt Apolipoprotein N-acyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.96 E-value=1.8e-28 Score=246.86 Aligned_cols=232 Identities=21% Similarity=0.252 Sum_probs=178.9
Q ss_pred CCCCceEEEEEecccccCHHHHHHHH-------HHHHHHHH--HCCCcEEEcCCCCCCCCCCCCccchhhhhccCCCCch
Q 017888 78 PPVAKFKVGLCQLSVTADKERNIAHA-------RRAIEEAA--EKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASP 148 (364)
Q Consensus 78 ~~~~~~kIA~vQ~~v~~d~~~n~~~i-------~~~i~~A~--~~gadLvVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~ 148 (364)
...+.++|+++|.|++.+.+.+.+.. ......+. .+++|+|||||.+++-...+. .+
T Consensus 223 ~~~~~~~V~lvQ~nI~q~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~dlVIwPEtA~p~~~~~~--------------~~ 288 (518)
T COG0815 223 VGEPTLTVALVQGNIPQDLKWDADALARLIAGYLEEEFLAAVDKQKPDLVVWPETALPFDLTRH--------------PD 288 (518)
T ss_pred CCCCceEEEEecCCCcccccCCHHHHHHHHHhhhhccccccccCCCCCEEEccccccccchhhc--------------ch
Confidence 34455999999999874433222222 22222222 389999999999987332110 12
Q ss_pred HHHHHHHHHHHcCcEEEEeeeeee--cCC--eeEEEEEEEcCCCcEEEEeeccccCCCC--CCCccccc--------ccc
Q 017888 149 STAMLSEVARLLKITIVGGSIPER--SGD--RLYNTCCVFGSDGKLIAKHRKIHLFDID--IPGKITFI--------ESK 214 (364)
Q Consensus 149 ~~~~l~~lA~~~~i~Iv~Gs~~~~--~~~--~~yNsa~vi~~~G~i~~~y~K~~L~~~~--~P~~~~~~--------E~~ 214 (364)
...++.+.+++.++.+++| ..+. .++ .+|||+++++++|+++.+|+|+||+||| +|-+.-+. ...
T Consensus 289 ~~~~~~~~~~~~~~~~iiG-~~~~~~~~~~~~yyNSv~~~~~~~~~~~~ydK~~LVPFGEYiP~~~~l~~~~~~~~~~~~ 367 (518)
T COG0815 289 ALARLAEALQRVGAPLLIG-TDVDGPAPGGGIYYNSVLVLDPGGEGVYRYDKVHLVPFGEYIPFPELLRPLYFFLNLPMS 367 (518)
T ss_pred HHHHHHHHHHhcCCcEEEe-ccccccCCCCcceeeEEEEecCCCCccccccceeeeCCccccchHHHHHHHhhhhccccc
Confidence 3566888888888999998 3332 233 4899999999999999999999999998 66432111 133
Q ss_pred cccCCCCCeEEecCCe-eEEEEEeccCcccHHHHHHHhCCceEEEEeCC---CCCCCChhHHHHHHHHHHHhcCcEEEEe
Q 017888 215 SLTAGETPTIVDTDVG-RIGIGICYDIRFQELAMIYGARGAHLICYPGA---FNMTTGPLHWELLQRARATDNQLYVATC 290 (364)
Q Consensus 215 ~~~~G~~~~vf~~~~~-rigv~IC~D~~fpe~~r~~~~~Gadlil~ps~---~~~~~~~~~~~~~~~~rA~en~~~vv~~ 290 (364)
.|.+|+...++.++++ |+++.||||..||+..|....+|+|+++++|| ++.+.++.+|..+++.||+|++++++++
T Consensus 368 ~f~~G~~~~v~~~~~~~~~~~~ICYE~~F~~~~r~~~~qga~~Lin~SNDAWf~~s~~p~QH~~~a~~RAiE~grp~iRA 447 (518)
T COG0815 368 DFSRGPGPQVLLLAGGPKIAPLICYEAIFPELVRASARQGAELLLNLSNDAWFGGSWGPYQHFQQARVRAVELGRPLVRA 447 (518)
T ss_pred cccCCCCCcceecCCCceeeceeeehhhchHHHHHhhcCCCcEEEEcccccccCCCcchHHHHHHHHHHHHhcCCcEEEE
Confidence 5778999999988765 69999999999999999999999999999998 3344677888888999999999999999
Q ss_pred cCCCCCCCCeeeeeEeEEECCCCCEeEeCC-CCCcEEEEEEchhh
Q 017888 291 SPARDEGAGYVAWGHSTLVGPFGEVLATTE-HAEDIIIAEIDYSI 334 (364)
Q Consensus 291 n~~g~~~~~~~~~G~S~Ii~p~G~il~~~~-~~e~vl~~~ldl~~ 334 (364)
+|+ |.|+++||+|++++..+ ++.+++..++.+..
T Consensus 448 tNt----------GiSavIdp~Gri~~~l~~~~~~~l~~~v~~~~ 482 (518)
T COG0815 448 TNT----------GISAVIDPRGRILAQLPYFTRGVLDATVPLKT 482 (518)
T ss_pred cCC----------cceEEECCCCCEEeecCCCCcceeeeeecccC
Confidence 988 67999999999999986 89999999887653
No 47
>PRK13825 conjugal transfer protein TraB; Provisional
Probab=99.92 E-value=6.8e-24 Score=207.10 Aligned_cols=190 Identities=15% Similarity=0.046 Sum_probs=142.1
Q ss_pred eEEEEEecccccCH-----HHHHHHHHHHHHHHHHCCCcEEEcCCCCCCCCCCCCccchhhhhccCCCCchHHHHHHHHH
Q 017888 83 FKVGLCQLSVTADK-----ERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVA 157 (364)
Q Consensus 83 ~kIA~vQ~~v~~d~-----~~n~~~i~~~i~~A~~~gadLvVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~lA 157 (364)
.++-.++++...+. -+...++.+.+++|.++|+|+|||||.++++|.... .+.+.+.+
T Consensus 186 ~~w~~v~t~~~~~~~~~~~~~~~~~~~~~v~~A~~~g~dlIVlPEta~~~~~~~~-----------------~~~~~~~l 248 (388)
T PRK13825 186 AGWVGVDTQLGRSLGRDASLERRRELIATVRAAAAAGARVVVLPESALGFWTPTT-----------------ERLWRESL 248 (388)
T ss_pred CCeEEEECCcccccCchhhHHHHHHHHHHHHhhcccCCCEEEccCcccccccccc-----------------cHHHHHHH
Confidence 37788888765221 133445667788888899999999999999874210 11235556
Q ss_pred HHcCcEEEEeeeeeecCCeeEEEEEEEcCCCcEEEEeeccccCCCC--CCCcccccccccccCCC-CCeEEecCCeeEEE
Q 017888 158 RLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDID--IPGKITFIESKSLTAGE-TPTIVDTDVGRIGI 234 (364)
Q Consensus 158 ~~~~i~Iv~Gs~~~~~~~~~yNsa~vi~~~G~i~~~y~K~~L~~~~--~P~~~~~~E~~~~~~G~-~~~vf~~~~~rigv 234 (364)
+++++.|++|+. +++++++||++++++++|.. ..|+|+||++++ +|-..-+.|..++.+|. ...+|++++.|+|+
T Consensus 249 ~~~~i~II~G~~-~~~~~~~yNsa~v~~~~G~~-~~Y~K~~LvPfgE~~P~~~~~~e~~~~~~g~~~~~vf~l~g~rvg~ 326 (388)
T PRK13825 249 RGSDVTVIAGAA-VVDPGGYDNVLVAISAGGGR-ILYRERMPVPVSMWQPWRPWTGQGGGARAHFFANPVVEIDGRRAAP 326 (388)
T ss_pred HhCCCeEEEEee-ecCCCCceEEEEEEeCCCCe-eeEeeeeCcCccccCchHHhhccccCCCCCCCCCCceeeCCeEEEE
Confidence 889999999954 55677899999999998875 499999998875 45332234666777773 34689999999999
Q ss_pred EEeccCcc--cHHHHHHHhCCceEEEEeCCCCCC---CChhHHHHHHHHHHHhcCcEEEEecCC
Q 017888 235 GICYDIRF--QELAMIYGARGAHLICYPGAFNMT---TGPLHWELLQRARATDNQLYVATCSPA 293 (364)
Q Consensus 235 ~IC~D~~f--pe~~r~~~~~Gadlil~ps~~~~~---~~~~~~~~~~~~rA~en~~~vv~~n~~ 293 (364)
+||||..| |+..+ ..+|+|+|++++|..+. ..+.++..+.+.||+|++++++++.|+
T Consensus 327 lICYE~~F~~pel~~--~~~GadlLv~~SNd~Wf~~s~~p~~q~~~~~~rA~e~g~plvrA~N~ 388 (388)
T PRK13825 327 LICYEQLLVWPVLQS--MLHSPDVIVAVGNGWWTKGTSIVAIQRASAEAWARLFGVPLVRAFNR 388 (388)
T ss_pred EEeeeecCcHHHHHh--hccCCCEEEEecCchhcCCCcHHHHHHHHHHHHHHHhCCCEEEecCC
Confidence 99999988 55533 37999999999983332 234567788999999999999998763
No 48
>KOG2303 consensus Predicted NAD synthase, contains CN hydrolase domain [Coenzyme transport and metabolism; General function prediction only]
Probab=99.82 E-value=2.3e-20 Score=179.22 Aligned_cols=248 Identities=22% Similarity=0.259 Sum_probs=191.4
Q ss_pred CCceEEEEEecccc-cCHHHHHHHHHHHHHHHHHCCCcEEEcCCCCCCCCCCCCccchhhhhccCCCCchHHHHHHHHHH
Q 017888 80 VAKFKVGLCQLSVT-ADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVAR 158 (364)
Q Consensus 80 ~~~~kIA~vQ~~v~-~d~~~n~~~i~~~i~~A~~~gadLvVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~ 158 (364)
.+.++||.++.|.+ -|++.|.++|.+.|++|+.+||.+-+=||+-++||.+.+...-.+... ...+.+.++-.
T Consensus 2 ~r~vtvAtc~lNqWAlDFegN~~rI~~Si~eAk~~gA~~RlGPELEi~GYgC~DHf~E~Dt~~------HswE~l~~l~~ 75 (706)
T KOG2303|consen 2 GRKVTVATCTLNQWALDFEGNMQRILKSIEEAKARGARYRLGPELEITGYGCEDHFLESDTLL------HSWEMLAELVE 75 (706)
T ss_pred CceEEEEEechhhhhhhccccHHHHHHHHHHHHhcCCeeecCCceeecCCChHHhhccchHHH------HHHHHHHHHHc
Confidence 45799999999998 799999999999999999999999999999999999877433222211 23444555543
Q ss_pred H---cCcEEEEeeeeeecCCeeEEEEEEEcCCCcEEEEeeccccCCCCCCCcccccccccccCCCCCe------------
Q 017888 159 L---LKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETPT------------ 223 (364)
Q Consensus 159 ~---~~i~Iv~Gs~~~~~~~~~yNsa~vi~~~G~i~~~y~K~~L~~~~~P~~~~~~E~~~~~~G~~~~------------ 223 (364)
. .++.+.+| +|....+-.||+.+++- +|+++.+..|+-|..-+ .+.|.+||+++....
T Consensus 76 ~~~~~~il~diG-mPv~hr~~ryNCrv~~~-n~kil~IRpKm~lanDg-----nyRE~RwFt~W~~~~~~e~y~lP~~i~ 148 (706)
T KOG2303|consen 76 SPVTQDILCDIG-MPVMHRNVRYNCRVLFL-NRKILLIRPKMWLANDG-----NYRESRWFTPWTRPRVTEEYQLPRMIQ 148 (706)
T ss_pred CCCCCCeeEecC-Cchhhhhhhhccceeec-CCeEEEEcccceeccCC-----CchhhccccccccccccceeeccHHHH
Confidence 2 47888899 89988899999999985 99999999999996543 788999999876432
Q ss_pred -------------EEecCCeeEEEEEeccCcccHHHH-HHHhCCceEEEEeCCCCCCCChh--HHHHHHHHHHHhcCcEE
Q 017888 224 -------------IVDTDVGRIGIGICYDIRFQELAM-IYGARGAHLICYPGAFNMTTGPL--HWELLQRARATDNQLYV 287 (364)
Q Consensus 224 -------------vf~~~~~rigv~IC~D~~fpe~~r-~~~~~Gadlil~ps~~~~~~~~~--~~~~~~~~rA~en~~~v 287 (364)
++.+-.--||.-||.|+|.|...+ .++..|++|+.+.+......++. +...+..+-+.-.|+|+
T Consensus 149 ~~~~Q~tVPfGdavl~~~dt~ig~EiCEEL~tp~sphi~mal~GVei~~NaSGShh~LrK~~~r~~li~~at~k~GGvYl 228 (706)
T KOG2303|consen 149 KHTGQETVPFGDAVLQTWDTCIGSEICEELWTPRSPHIDMALDGVEIITNASGSHHELRKLNTRVDLILNATSKCGGVYL 228 (706)
T ss_pred HHhCCeeecccceeeeecccchhHHHHHHHcCCCCcchhhhhCceEEEecCCccHHHHhhhhhhhHHHhcchhhcceEEE
Confidence 333333458999999999987665 58899999999988754433332 22333334444456665
Q ss_pred EEecCCCCCCCCeeeeeEeEEECCCCCEeEeCC----CCCcEEEEEEchhhHHHHHhcC
Q 017888 288 ATCSPARDEGAGYVAWGHSTLVGPFGEVLATTE----HAEDIIIAEIDYSILELRRTSL 342 (364)
Q Consensus 288 v~~n~~g~~~~~~~~~G~S~Ii~p~G~il~~~~----~~e~vl~~~ldl~~~~~~r~~~ 342 (364)
++|..|.+++.+.|+|.|+|.- +|.++++.. ..-+++++++|++.++..|...
T Consensus 229 -yaNqrGCDG~RlYydGca~Ia~-NG~vlAqg~QFsl~DveVv~atvDle~vrsyR~~~ 285 (706)
T KOG2303|consen 229 -YANQRGCDGDRLYYDGCAMIAM-NGSVLAQGSQFSLDDVEVVTATVDLEDVRSYRASI 285 (706)
T ss_pred -eeccCCCCCceeEecchhheee-cceeeeecccccccceEEEEEEecHHHHHHHHhhh
Confidence 5788888888888999887765 999999873 5678999999999999888543
No 49
>PLN02798 nitrilase
Probab=84.26 E-value=6.3 Score=36.98 Aligned_cols=74 Identities=19% Similarity=0.203 Sum_probs=43.3
Q ss_pred HHHHHHHhCCceEEEEeCCCCC--CCCh----------hHHHHHHHHHHHhcCcEEEEecCCCCCCCCeeeeeEeEEECC
Q 017888 244 ELAMIYGARGAHLICYPGAFNM--TTGP----------LHWELLQRARATDNQLYVATCSPARDEGAGYVAWGHSTLVGP 311 (364)
Q Consensus 244 e~~r~~~~~Gadlil~ps~~~~--~~~~----------~~~~~~~~~rA~en~~~vv~~n~~g~~~~~~~~~G~S~Ii~p 311 (364)
++.+.++.+|+|||+.|-.+.. .... ..+....+..|.+++++++..........+-..+-...+++|
T Consensus 33 ~~i~~A~~~gadlvvfPE~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~A~~~~i~iv~G~~~~~~~~~~~~yNs~~vi~~ 112 (286)
T PLN02798 33 RLAKEAAAAGAKLLFLPECFSFIGDKDGESLAIAEPLDGPIMQRYRSLARESGLWLSLGGFQEKGPDDSHLYNTHVLIDD 112 (286)
T ss_pred HHHHHHHHCCCCEEEcCCCccccCcCchhhhhhcccCCCHHHHHHHHHHHHcCeEEEEeeeEcccCCCCceEEEEEEECC
Confidence 3455667789999999986321 1100 012334567788999998753211110011124456678899
Q ss_pred CCCEeE
Q 017888 312 FGEVLA 317 (364)
Q Consensus 312 ~G~il~ 317 (364)
+|+++.
T Consensus 113 ~G~i~~ 118 (286)
T PLN02798 113 SGEIRS 118 (286)
T ss_pred CCCEEE
Confidence 999875
No 50
>cd07581 nitrilase_3 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=81.69 E-value=9.4 Score=34.85 Aligned_cols=74 Identities=23% Similarity=0.261 Sum_probs=45.7
Q ss_pred cHHHHHHHhCCceEEEEeCCCCC--CCCh-----------hHHHHHHHHHHHhcCcEEEEecCCCCCCCCeeeeeEeEEE
Q 017888 243 QELAMIYGARGAHLICYPGAFNM--TTGP-----------LHWELLQRARATDNQLYVATCSPARDEGAGYVAWGHSTLV 309 (364)
Q Consensus 243 pe~~r~~~~~Gadlil~ps~~~~--~~~~-----------~~~~~~~~~rA~en~~~vv~~n~~g~~~~~~~~~G~S~Ii 309 (364)
-+..+.++++|+|+|+.|-.+.. .... ..+....+..|.+++++++.....-. .++ ..+=...++
T Consensus 20 ~~~i~~a~~~g~dlivfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~iv~G~~~~~-~~~-~~yNs~~~i 97 (255)
T cd07581 20 RRLLAEAAAAGADLVVFPEYTMARFGDGLDDYARVAEPLDGPFVSALARLARELGITVVAGMFEPA-GDG-RVYNTLVVV 97 (255)
T ss_pred HHHHHHHHHcCCCEEECcchhcCCCCcchhhHHhhhccCCCHHHHHHHHHHHHcCeEEEEEeeeeC-CCC-cEEEeEEEE
Confidence 34566677899999999876422 1111 12334456778889999886543221 111 234566778
Q ss_pred CCCCCEeEe
Q 017888 310 GPFGEVLAT 318 (364)
Q Consensus 310 ~p~G~il~~ 318 (364)
+|+|+++..
T Consensus 98 ~~~G~i~~~ 106 (255)
T cd07581 98 GPDGEIIAV 106 (255)
T ss_pred CCCCcEEEE
Confidence 899997754
No 51
>PLN00202 beta-ureidopropionase
Probab=79.73 E-value=9.9 Score=37.89 Aligned_cols=75 Identities=19% Similarity=0.407 Sum_probs=44.7
Q ss_pred HHHHHHHhCCceEEEEeCCCCCCCCh----hHH-----------HHHHHHHHHhcCcEEEEecCCCCCCCCeeeeeEeEE
Q 017888 244 ELAMIYGARGAHLICYPGAFNMTTGP----LHW-----------ELLQRARATDNQLYVATCSPARDEGAGYVAWGHSTL 308 (364)
Q Consensus 244 e~~r~~~~~Gadlil~ps~~~~~~~~----~~~-----------~~~~~~rA~en~~~vv~~n~~g~~~~~~~~~G~S~I 308 (364)
++.+.++.+|||+|+.|-.|...... ..| ....+..|.+++++++..-...+...+-.++-...+
T Consensus 117 ~li~~Aa~~gadLVvfPE~~~~g~~~~~~~~~~~~~ae~~~g~~~~~l~~lA~~~~i~Iv~G~~e~~~~~~~~~yNSa~v 196 (405)
T PLN00202 117 PMIDAAGAAGVNILCLQEAWTMPFAFCTREKRWCEFAEPVDGESTKFLQELARKYNMVIVSPILERDVNHGETLWNTAVV 196 (405)
T ss_pred HHHHHHHHCCCCEEEecchhccccccccccchHHHHhhhCCCHHHHHHHHHHHHCCeEEEEEeeeeecCCCCcEEEEEEE
Confidence 45556677899999998865321100 112 234567788999998853211111111234566778
Q ss_pred ECCCCCEeEe
Q 017888 309 VGPFGEVLAT 318 (364)
Q Consensus 309 i~p~G~il~~ 318 (364)
++|+|+++..
T Consensus 197 I~~~G~iig~ 206 (405)
T PLN00202 197 IGNNGNIIGK 206 (405)
T ss_pred ECCCCcEEEE
Confidence 8999998754
No 52
>cd07572 nit Nit1, Nit 2, and related proteins, and the Nit1-like domain of NitFhit (class 10 nitrilases). This subgroup includes mammalian Nit1 and Nit2, the Nit1-like domain of the invertebrate NitFhit, and various uncharacterized bacterial and archaeal Nit-like proteins. Nit1 and Nit2 are candidate tumor suppressor proteins. In NitFhit, the Nit1-like domain is encoded as a fusion protein with the non-homologous tumor suppressor, fragile histidine triad (Fhit). Mammalian Nit1 and Fhit may affect distinct signal pathways, and both may participate in DNA damage-induced apoptosis. Nit1 is a negative regulator in T cells. Overexpression of Nit2 in HeLa cells leads to a suppression of cell growth through cell cycle arrest in G2. These Nit proteins and the Nit1-like domain of NitFhit belong to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in t
Probab=78.74 E-value=13 Score=34.01 Aligned_cols=74 Identities=23% Similarity=0.271 Sum_probs=43.6
Q ss_pred HHHHHHHhCCceEEEEeCCCCCCCC-------------hhHHHHHHHHHHHhcCcEEEEecCCCCCCCCeeeeeEeEEEC
Q 017888 244 ELAMIYGARGAHLICYPGAFNMTTG-------------PLHWELLQRARATDNQLYVATCSPARDEGAGYVAWGHSTLVG 310 (364)
Q Consensus 244 e~~r~~~~~Gadlil~ps~~~~~~~-------------~~~~~~~~~~rA~en~~~vv~~n~~g~~~~~~~~~G~S~Ii~ 310 (364)
++.+.++++|+|+|+.|-.+..... ........+..|.+++++++..........+-.++-...+++
T Consensus 22 ~~i~~A~~~g~dlivfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~G~~~~~~~~~~~~yNs~~~i~ 101 (265)
T cd07572 22 ELIEEAAAQGAKLVVLPECFNYPGGTDAFKLALAEEEGDGPTLQALSELAKEHGIWLVGGSIPERDDDDGKVYNTSLVFD 101 (265)
T ss_pred HHHHHHHHCCCCEEECCccccCcCcchhhhhhhhccccCChHHHHHHHHHHHCCeEEEEeeeccccCCCCcEEEEEEEEC
Confidence 4556677889999999886432100 012233456778889998875432111110122455667889
Q ss_pred CCCCEeE
Q 017888 311 PFGEVLA 317 (364)
Q Consensus 311 p~G~il~ 317 (364)
|+|+++.
T Consensus 102 ~~G~i~~ 108 (265)
T cd07572 102 PDGELVA 108 (265)
T ss_pred CCCeEEe
Confidence 9999864
No 53
>cd07587 ML_beta-AS mammalian-like beta-alanine synthase (beta-AS) and similar proteins (class 5 nitrilases). This subgroup includes mammalian-like beta-AS (EC 3.5.1.6, also known as beta-ureidopropionase or N-carbamoyl-beta-alanine amidohydrolase). This enzyme catalyzes the third and final step in the catabolic pyrimidine catabolic pathway responsible for the degradation of uracil and thymine, the hydrolysis of N-carbamyl-beta-alanine and N-carbamyl-beta-aminoisobutyrate to the beta-amino acids, beta-alanine and beta-aminoisobutyrate respectively. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 5. Members of this superfamily generally form homomeric
Probab=78.18 E-value=12 Score=36.72 Aligned_cols=75 Identities=19% Similarity=0.317 Sum_probs=44.4
Q ss_pred HHHHHHHhCCceEEEEeCCCCCCC----C-h------------hHHHHHHHHHHHhcCcEEEEecCCCCCCCCeeeeeEe
Q 017888 244 ELAMIYGARGAHLICYPGAFNMTT----G-P------------LHWELLQRARATDNQLYVATCSPARDEGAGYVAWGHS 306 (364)
Q Consensus 244 e~~r~~~~~Gadlil~ps~~~~~~----~-~------------~~~~~~~~~rA~en~~~vv~~n~~g~~~~~~~~~G~S 306 (364)
++.+.++++|||||+.|-.|...- . . ..+....+..|.+++++|+..-...+...+-..+-.+
T Consensus 94 ~~i~~Aa~~gadLivfPE~~l~g~~~~~~~~~~~~~~ae~~~~g~~~~~l~~lAk~~~i~Iv~gi~e~~~~~~~~~yNta 173 (363)
T cd07587 94 KIIEAAAMAGVNIICFQEAWTMPFAFCTREKLPWCEFAESAEDGPTTKFCQELAKKYNMVIVSPILERDEEHGDTIWNTA 173 (363)
T ss_pred HHHHHHHHcCCCEEEccccccCCccccccccchHHHHhhccCCChHHHHHHHHHHHcCcEEEEeeeeeecCCCCcEEEEE
Confidence 345566778999999988653210 0 0 0122245678889999997532111110012345667
Q ss_pred EEECCCCCEeEe
Q 017888 307 TLVGPFGEVLAT 318 (364)
Q Consensus 307 ~Ii~p~G~il~~ 318 (364)
.+++|+|+++..
T Consensus 174 ~vi~~~G~ilg~ 185 (363)
T cd07587 174 VVISNSGNVLGK 185 (363)
T ss_pred EEECCCCCEEee
Confidence 888999998754
No 54
>cd07565 aliphatic_amidase aliphatic amidases (class 2 nitrilases). Aliphatic amidases catalyze the hydrolysis of short-chain aliphatic amides to form ammonia and the corresponding organic acid. This group includes Pseudomonas aeruginosa (Pa) AmiE, the amidase from Geobacillus pallidus RAPc8 (RAPc8 amidase), and Helicobacter pylori (Hp) AmiE and AmiF. PaAimE and HpAmiE hydrolyze various very short aliphatic amides, including propionamide, acetamide and acrylamide. HpAmiF is a formamidase which specifically hydrolyzes formamide. These proteins belong to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 2. Members of this superfamily generally form homomeric complexes, the basic
Probab=78.08 E-value=17 Score=34.23 Aligned_cols=69 Identities=17% Similarity=0.165 Sum_probs=42.3
Q ss_pred HHHHHCCCcEEEcCCCCCCCCCCCCccchhhhhccCCCCchHHHHHHHHHHHcCcEEEEeeeeeecC-CeeEEEEEEEcC
Q 017888 108 EEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERSG-DRLYNTCCVFGS 186 (364)
Q Consensus 108 ~~A~~~gadLvVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~~~i~Iv~Gs~~~~~~-~~~yNsa~vi~~ 186 (364)
+..+.+|||||+.|-.+.... . ......++.-|.+++++++.-+..-.++ ..++=.+.+++|
T Consensus 163 r~la~~GAdill~ps~~~~~~---------~--------~~w~~~~~aRA~En~~~vv~aN~~G~~~~~~~~G~S~ivdP 225 (291)
T cd07565 163 RECAYKGAELIIRIQGYMYPA---------K--------DQWIITNKANAWCNLMYTASVNLAGFDGVFSYFGESMIVNF 225 (291)
T ss_pred HHHHHCCCeEEEECCcCCCCc---------c--------hHHHHHHHHHHHhcCcEEEEecccccCCCceeeeeeEEECC
Confidence 334578999999997542211 0 1133445677789999988543221122 234556778899
Q ss_pred CCcEEEE
Q 017888 187 DGKLIAK 193 (364)
Q Consensus 187 ~G~i~~~ 193 (364)
+|+++..
T Consensus 226 ~G~ila~ 232 (291)
T cd07565 226 DGRTLGE 232 (291)
T ss_pred CCCEEEe
Confidence 9998743
No 55
>cd07584 nitrilase_6 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=77.70 E-value=16 Score=33.34 Aligned_cols=74 Identities=24% Similarity=0.319 Sum_probs=43.8
Q ss_pred HHHHHHHhCCceEEEEeCCCCCCCCh---------------hHHHHHHHHHHHhcCcEEEEecCCCCCCCCeeeeeEeEE
Q 017888 244 ELAMIYGARGAHLICYPGAFNMTTGP---------------LHWELLQRARATDNQLYVATCSPARDEGAGYVAWGHSTL 308 (364)
Q Consensus 244 e~~r~~~~~Gadlil~ps~~~~~~~~---------------~~~~~~~~~rA~en~~~vv~~n~~g~~~~~~~~~G~S~I 308 (364)
++.+.++++|+|+|+.|-.+...... .......+..|.+++++++..........+ .++-...+
T Consensus 23 ~~i~~a~~~ga~liv~PE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~G~~~~~~~~~-~~~Ns~~~ 101 (258)
T cd07584 23 ELCKEAAAEGADLICFPELATTGYRPDLLGPKLWELSEPIDGPTVRLFSELAKELGVYIVCGFVEKGGVPG-KVYNSAVV 101 (258)
T ss_pred HHHHHHHHcCCCEEEcccccccCCCccccchhhHhhccCCCCcHHHHHHHHHHHcCeEEEEeehcccCCCC-ceEEEEEE
Confidence 34455667899999998764221000 012334567788899998875432211111 24556678
Q ss_pred ECCCCCEeEe
Q 017888 309 VGPFGEVLAT 318 (364)
Q Consensus 309 i~p~G~il~~ 318 (364)
++|+|+++..
T Consensus 102 i~~~G~i~~~ 111 (258)
T cd07584 102 IDPEGESLGV 111 (258)
T ss_pred ECCCCCEEeE
Confidence 8999998643
No 56
>cd07576 R-amidase_like Pseudomonas sp. MCI3434 R-amidase and related proteins (putative class 13 nitrilases). Pseudomonas sp. MCI3434 R-amidase hydrolyzes (R,S)-piperazine-2-tert-butylcarboxamide to form (R)-piperazine-2-carboxylic acid. It does so with strict R-stereoselectively. Its preferred substrates are carboxamide compounds which have the amino or imino group connected to their beta- or gamma-carbon. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), class 13 represents proteins that at the time were difficult to place in a distinct similarity group. It has been suggested that this subgroup represents a new class. Members of the nitrilase superfamily generally form homomeric compl
Probab=76.44 E-value=20 Score=32.59 Aligned_cols=72 Identities=28% Similarity=0.325 Sum_probs=44.1
Q ss_pred HHHHHHHhCCceEEEEeCCCCCC--CC----------hhHHHHHHHHHHHhcCcEEEEecCCCCCCCCeeeeeEeEEECC
Q 017888 244 ELAMIYGARGAHLICYPGAFNMT--TG----------PLHWELLQRARATDNQLYVATCSPARDEGAGYVAWGHSTLVGP 311 (364)
Q Consensus 244 e~~r~~~~~Gadlil~ps~~~~~--~~----------~~~~~~~~~~rA~en~~~vv~~n~~g~~~~~~~~~G~S~Ii~p 311 (364)
++.+.++++|+|+++.|-.+... .. ...+....+..|.+++++++....... .+ ..+=...+++|
T Consensus 23 ~~i~~a~~~ga~lvv~PE~~l~g~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii~G~~~~~--~~-~~yNs~~~i~~ 99 (254)
T cd07576 23 EAAARAAAAGADLLVFPELFLTGYNIGDAVARLAEPADGPALQALRAIARRHGIAIVVGYPERA--GG-AVYNAAVLIDE 99 (254)
T ss_pred HHHHHHHHcCCCEEEccCccccCCCCcchhhhhhcccCChHHHHHHHHHHHcCCEEEEeccccC--CC-ceEEEEEEECC
Confidence 45666778999999998864321 11 012333456678889999886533211 11 23445667899
Q ss_pred CCCEeEe
Q 017888 312 FGEVLAT 318 (364)
Q Consensus 312 ~G~il~~ 318 (364)
+|+++..
T Consensus 100 ~G~i~~~ 106 (254)
T cd07576 100 DGTVLAN 106 (254)
T ss_pred CCCEeeE
Confidence 9997643
No 57
>cd07582 nitrilase_4 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=75.56 E-value=19 Score=33.94 Aligned_cols=67 Identities=16% Similarity=0.191 Sum_probs=39.2
Q ss_pred CCceEEEEeCCCCC--CCC--hhH-------------HHHHHHHHHHhcCcEEEEecCCCCCCCCeeeeeEeEEECCCCC
Q 017888 252 RGAHLICYPGAFNM--TTG--PLH-------------WELLQRARATDNQLYVATCSPARDEGAGYVAWGHSTLVGPFGE 314 (364)
Q Consensus 252 ~Gadlil~ps~~~~--~~~--~~~-------------~~~~~~~rA~en~~~vv~~n~~g~~~~~~~~~G~S~Ii~p~G~ 314 (364)
+|||+|+.|-.+.. ..+ ... +....+..|.+++++++..........+-.++-...+++|+|+
T Consensus 41 ~gadlivfPE~~ltGy~~~~~~~~~~~~~~a~~~~~~~~~~l~~~A~~~~i~iv~G~~e~~~~~~~~~yNsa~~i~~~G~ 120 (294)
T cd07582 41 LPVRLVVLPEYALQGFPMGEPREVWQFDKAAIDIPGPETEALGEKAKELNVYIAANAYERDPDFPGLYFNTAFIIDPSGE 120 (294)
T ss_pred CCceEEEcCccccccCCcccchhhhhhhhccccCCCHHHHHHHHHHHHcCEEEEEeeeeecCCCCCcEEEEEEEECCCCc
Confidence 47999998876431 111 001 2234567788899998864321111111224556788899999
Q ss_pred EeEe
Q 017888 315 VLAT 318 (364)
Q Consensus 315 il~~ 318 (364)
++..
T Consensus 121 i~~~ 124 (294)
T cd07582 121 IILR 124 (294)
T ss_pred EEEE
Confidence 8865
No 58
>cd07564 nitrilases_CHs Nitrilases, cyanide hydratase (CH)s, and similar proteins (class 1 nitrilases). Nitrilases (nitrile aminohydrolases, EC:3.5.5.1) hydrolyze nitriles (RCN) to ammonia and the corresponding carboxylic acid. Most nitrilases prefer aromatic nitriles, some prefer arylacetonitriles and others aliphatic nitriles. This group includes the nitrilase cyanide dihydratase (CDH), which hydrolyzes inorganic cyanide (HCN) to produce formate. It also includes cyanide hydratase (CH), which hydrolyzes HCN to formamide. This group includes four Arabidopsis thaliana nitrilases (Ath)NIT1-4. AthNIT1-3 have a strong substrate preference for phenylpropionitrile (PPN) and other nitriles which may originate from the breakdown of glucosinolates. The product of PPN hydrolysis, phenylacetic acid has auxin activity. AthNIT1-3 can also convert indoacetonitrile to indole-3-acetic acid (IAA, auxin), but with a lower affinity and velocity. From their expression patterns, it has been speculated that
Probab=73.94 E-value=20 Score=33.74 Aligned_cols=72 Identities=28% Similarity=0.368 Sum_probs=44.0
Q ss_pred HHHHHHHhCCceEEEEeCCCCCCCC-----------hhHH--------------HHHHHHHHHhcCcEEEEecCCCCCCC
Q 017888 244 ELAMIYGARGAHLICYPGAFNMTTG-----------PLHW--------------ELLQRARATDNQLYVATCSPARDEGA 298 (364)
Q Consensus 244 e~~r~~~~~Gadlil~ps~~~~~~~-----------~~~~--------------~~~~~~rA~en~~~vv~~n~~g~~~~ 298 (364)
++.+.++.+|+|+|+.|-.+..... ...+ ....+..|.+++++++....... .
T Consensus 24 ~~i~~A~~~ga~lvvfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~iv~G~~~~~--~ 101 (297)
T cd07564 24 RLIEEAAANGAQLVVFPEAFIPGYPYWIWFGAPAEGRELFARYYENSVEVDGPELERLAEAARENGIYVVLGVSERD--G 101 (297)
T ss_pred HHHHHHHHCCCCEEEeccccccCCCchhhcCCcccchHHHHHHHHhCcCCCCHHHHHHHHHHHHcCcEEEEeeEecc--C
Confidence 4666777899999999986432100 1111 12235667789999886532211 1
Q ss_pred CeeeeeEeEEECCCCCEeEe
Q 017888 299 GYVAWGHSTLVGPFGEVLAT 318 (364)
Q Consensus 299 ~~~~~G~S~Ii~p~G~il~~ 318 (364)
+ .++-...+++|+|+++..
T Consensus 102 ~-~~yNs~~vi~~~G~i~~~ 120 (297)
T cd07564 102 G-TLYNTQLLIDPDGELLGK 120 (297)
T ss_pred C-ceEEEEEEEcCCCCEeee
Confidence 2 244566788999998754
No 59
>cd07568 ML_beta-AS_like mammalian-like beta-alanine synthase (beta-AS) and similar proteins (class 5 nitrilases). This family includes mammalian-like beta-AS (EC 3.5.1.6, also known as beta-ureidopropionase or N-carbamoyl-beta-alanine amidohydrolase). This enzyme catalyzes the third and final step in the catabolic pyrimidine catabolic pathway responsible for the degradation of uracil and thymine, the hydrolysis of N-carbamyl-beta-alanine and N-carbamyl-beta-aminoisobutyrate to the beta-amino acids, beta-alanine and beta-aminoisobutyrate respectively. This family belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 5. Members of this superfamily generally form homomeric
Probab=73.73 E-value=17 Score=33.88 Aligned_cols=73 Identities=14% Similarity=0.137 Sum_probs=42.5
Q ss_pred HHHHHHHhCCceEEEEeCCCC--CC--CCh------------hHHHHHHHHHHHhcCcEEEEecCCCCCCCCeeeeeEeE
Q 017888 244 ELAMIYGARGAHLICYPGAFN--MT--TGP------------LHWELLQRARATDNQLYVATCSPARDEGAGYVAWGHST 307 (364)
Q Consensus 244 e~~r~~~~~Gadlil~ps~~~--~~--~~~------------~~~~~~~~~rA~en~~~vv~~n~~g~~~~~~~~~G~S~ 307 (364)
++.+.++++|||+|+.|-.+. +. ... ..+....+..|.+++++++..... ...++ .++=...
T Consensus 34 ~~i~~A~~~gadlvvfPE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~ii~g~~~-~~~~~-~~yNs~~ 111 (287)
T cd07568 34 TMIREAAEAGAQIVCLQEIFYGPYFCAEQDTKWYEFAEEIPNGPTTKRFAALAKEYNMVLILPIYE-KEQGG-TLYNTAA 111 (287)
T ss_pred HHHHHHHHcCCcEEEcccccCCCCCccccccchhhhcccCCCChHHHHHHHHHHHCCEEEEEEeEE-EcCCC-cEEEEEE
Confidence 355566778999999987532 11 000 012233567788999998863211 11112 2345567
Q ss_pred EECCCCCEeEe
Q 017888 308 LVGPFGEVLAT 318 (364)
Q Consensus 308 Ii~p~G~il~~ 318 (364)
+++|+|+++..
T Consensus 112 ~i~~~G~i~~~ 122 (287)
T cd07568 112 VIDADGTYLGK 122 (287)
T ss_pred EECCCCcEeeE
Confidence 88999997643
No 60
>cd07566 ScNTA1_like Saccharomyces cerevisiae N-terminal amidase NTA1, and related proteins (class 3 nitrilases). Saccharomyces cerevisiae NTA1 functions in the N-end rule protein degradation pathway. It specifically deaminates the N-terminal asparagine and glutamine residues of substrates of this pathway, to aspartate and glutamate respectively, these latter are the destabilizing residues. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 3.
Probab=73.64 E-value=21 Score=33.87 Aligned_cols=74 Identities=16% Similarity=0.087 Sum_probs=42.3
Q ss_pred HHHHHHh----CCceEEEEeCCCCC--CCC-hhH------------HHHHHHHHHHhcCcEEEEecCCCCCCCCeeeeeE
Q 017888 245 LAMIYGA----RGAHLICYPGAFNM--TTG-PLH------------WELLQRARATDNQLYVATCSPARDEGAGYVAWGH 305 (364)
Q Consensus 245 ~~r~~~~----~Gadlil~ps~~~~--~~~-~~~------------~~~~~~~rA~en~~~vv~~n~~g~~~~~~~~~G~ 305 (364)
+...++. +|+|||+.|-.+.. ... ... .....+..|.+++++++........+.+-.++-.
T Consensus 24 ~i~~A~~~~~~~gadLIVfPEl~ltGY~~~~~~~~~~~ae~~~~g~~~~~l~~lAk~~~i~Iv~G~~e~~~~~~~~~yNt 103 (295)
T cd07566 24 LLDKTKKRAKLKKPDILVLPELALTGYNFHSLEHIKPYLEPTTSGPSFEWAREVAKKFNCHVVIGYPEKVDESSPKLYNS 103 (295)
T ss_pred HHHHHHhhccCCCCcEEEcCCCCcccCCcccHHHHHHHHHhcCCCHHHHHHHHHHHhcCCEEEEeeeEecCCCCCceEEE
Confidence 3344455 79999999886432 110 000 1122355678899998864322111100135567
Q ss_pred eEEECCCCCEeEe
Q 017888 306 STLVGPFGEVLAT 318 (364)
Q Consensus 306 S~Ii~p~G~il~~ 318 (364)
+.+++|+|++++.
T Consensus 104 a~vi~~~G~ii~~ 116 (295)
T cd07566 104 ALVVDPEGEVVFN 116 (295)
T ss_pred EEEEcCCCeEEEE
Confidence 7889999998754
No 61
>cd07583 nitrilase_5 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=73.60 E-value=21 Score=32.48 Aligned_cols=73 Identities=25% Similarity=0.224 Sum_probs=43.0
Q ss_pred HHHHHHHhCCceEEEEeCCCCCCCCh-----------hHHHHHHHHHHHhcCcEEEEecCCCCCCCCeeeeeEeEEECCC
Q 017888 244 ELAMIYGARGAHLICYPGAFNMTTGP-----------LHWELLQRARATDNQLYVATCSPARDEGAGYVAWGHSTLVGPF 312 (364)
Q Consensus 244 e~~r~~~~~Gadlil~ps~~~~~~~~-----------~~~~~~~~~rA~en~~~vv~~n~~g~~~~~~~~~G~S~Ii~p~ 312 (364)
++...++++|+|+|+.|-.+...... ..+....+..|.+++++++.....-.. +..++=...+++|+
T Consensus 23 ~~i~~A~~~g~dlvv~PE~~l~g~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~iv~G~~~~~~--~~~~yNs~~~i~~~ 100 (253)
T cd07583 23 SLIEEAAAAGADLIVLPEMWNTGYFLDDLYELADEDGGETVSFLSELAKKHGVNIVAGSVAEKE--GGKLYNTAYVIDPD 100 (253)
T ss_pred HHHHHHHHCCCCEEEcCCccCCCCChhhHHhhhcccCchHHHHHHHHHHHcCcEEEeceEEecC--CCcEEEEEEEECCC
Confidence 44555677899999998864221100 122334566778889988853211111 11244556788999
Q ss_pred CCEeEe
Q 017888 313 GEVLAT 318 (364)
Q Consensus 313 G~il~~ 318 (364)
|+++..
T Consensus 101 G~i~~~ 106 (253)
T cd07583 101 GELIAT 106 (253)
T ss_pred CcEEEE
Confidence 987653
No 62
>cd07580 nitrilase_2 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=73.13 E-value=27 Score=32.21 Aligned_cols=74 Identities=15% Similarity=0.161 Sum_probs=41.3
Q ss_pred HHHHHCCCcEEEcCCCCCCCCCCCCccchhhhhccCCCCchHHHHHHHHHHHcCcEEEEeeeeeecCCe-eEEEEEEEcC
Q 017888 108 EEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDR-LYNTCCVFGS 186 (364)
Q Consensus 108 ~~A~~~gadLvVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~~~i~Iv~Gs~~~~~~~~-~yNsa~vi~~ 186 (364)
+..+.+|||||+.|=.+........ ... .......+..|.+++++++.-+..-.+++. .+=.+.+++|
T Consensus 154 r~~~~~ga~li~~ps~~~~~~~~~~---~~~--------~~~~~~~~arA~en~~~vv~~n~~G~~~~~~~~G~S~ii~p 222 (268)
T cd07580 154 RLLALQGADIVCVPTNWVPMPRPPE---GGP--------PMANILAMAAAHSNGLFIACADRVGTERGQPFIGQSLIVGP 222 (268)
T ss_pred HHHHHcCCCEEEEcCcccccCCccc---ccC--------cHHHHhhHHHHhhCCcEEEEEeeeeeccCceEeeeeEEECC
Confidence 3446789999999976533221000 000 012223455677899998764332222333 3346688999
Q ss_pred CCcEEE
Q 017888 187 DGKLIA 192 (364)
Q Consensus 187 ~G~i~~ 192 (364)
+|+++.
T Consensus 223 ~G~~~~ 228 (268)
T cd07580 223 DGWPLA 228 (268)
T ss_pred CCCeee
Confidence 999863
No 63
>PLN02747 N-carbamolyputrescine amidase
Probab=72.95 E-value=18 Score=34.07 Aligned_cols=72 Identities=13% Similarity=0.037 Sum_probs=42.4
Q ss_pred HHHHHHHhCCceEEEEeCCCCCC--CC-----h---------hHHHHHHHHHHHhcCcEEEEecCCCCCCCCeeeeeEeE
Q 017888 244 ELAMIYGARGAHLICYPGAFNMT--TG-----P---------LHWELLQRARATDNQLYVATCSPARDEGAGYVAWGHST 307 (364)
Q Consensus 244 e~~r~~~~~Gadlil~ps~~~~~--~~-----~---------~~~~~~~~~rA~en~~~vv~~n~~g~~~~~~~~~G~S~ 307 (364)
++.+.+++.|||+|+.|-.+... .. . ..........|.+++++++...... .++ ..+-...
T Consensus 29 ~~i~~A~~~gadlvvfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~g~~~~--~~~-~~yNs~~ 105 (296)
T PLN02747 29 RLVREAHAKGANIILIQELFEGYYFCQAQREDFFQRAKPYEGHPTIARMQKLAKELGVVIPVSFFEE--ANN-AHYNSIA 105 (296)
T ss_pred HHHHHHHHCCCcEEEcccccCCCCCccccccchhhhcccCCCChHHHHHHHHHHHcCeEEEeeeeec--CCC-ceEEEEE
Confidence 56667778999999998864211 00 0 0122234667788899887643211 112 2334556
Q ss_pred EECCCCCEeEe
Q 017888 308 LVGPFGEVLAT 318 (364)
Q Consensus 308 Ii~p~G~il~~ 318 (364)
+++|+|++++.
T Consensus 106 ~i~~~G~i~~~ 116 (296)
T PLN02747 106 IIDADGTDLGL 116 (296)
T ss_pred EECCCCCCcce
Confidence 78999987643
No 64
>cd07197 nitrilase Nitrilase superfamily, including nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes. This superfamily (also known as the C-N hydrolase superfamily) contains hydrolases that break carbon-nitrogen bonds; it includes nitrilases, cyanide dihydratases, aliphatic amidases, N-terminal amidases, beta-ureidopropionases, biotinidases, pantotheinase, N-carbamyl-D-amino acid amidohydrolases, the glutaminase domain of glutamine-dependent NAD+ synthetase, apolipoprotein N-acyltransferases, and N-carbamoylputrescine amidohydrolases, among others. These enzymes depend on a Glu-Lys-Cys catalytic triad, and work through a thiol acylenzyme intermediate. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. These oligomers include dimers, tetramers, hexamers, octamers, tetradecamers, octadecamers, as well as variable length helical arrangements and homo-oligomeric spirals. These proteins have roles in vitamin and
Probab=72.06 E-value=24 Score=31.80 Aligned_cols=71 Identities=17% Similarity=0.205 Sum_probs=43.6
Q ss_pred HHHHHHHhCCceEEEEeCCCCCC--CC------------hhHHHHHHHHHHHhcCcEEEEecCCCCCCCCeeeeeEeEEE
Q 017888 244 ELAMIYGARGAHLICYPGAFNMT--TG------------PLHWELLQRARATDNQLYVATCSPARDEGAGYVAWGHSTLV 309 (364)
Q Consensus 244 e~~r~~~~~Gadlil~ps~~~~~--~~------------~~~~~~~~~~rA~en~~~vv~~n~~g~~~~~~~~~G~S~Ii 309 (364)
...+.+.++|+|+++.|-.+... .. ...+....+..|.+++++++...... .++ .++=...++
T Consensus 22 ~~i~~a~~~g~dlvvfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~ii~G~~~~--~~~-~~~N~~~~i 98 (253)
T cd07197 22 RLIKEAAEQGADLIVLPELFLTGYSFESAKEDLDLAEELDGPTLEALAELAKELGIYIVAGIAEK--DGD-KLYNTAVVI 98 (253)
T ss_pred HHHHHHHHCCCCEEEcCCccccCCccccchhhhhhcccCCchHHHHHHHHHHHhCeEEEeeeEEc--cCC-ceEEEEEEE
Confidence 45556677899999998853221 00 11334456677888899888654321 111 244566788
Q ss_pred CCCCCEeE
Q 017888 310 GPFGEVLA 317 (364)
Q Consensus 310 ~p~G~il~ 317 (364)
+|+|+++.
T Consensus 99 ~~~G~i~~ 106 (253)
T cd07197 99 DPDGEIIG 106 (253)
T ss_pred CCCCeEEE
Confidence 99999664
No 65
>cd07585 nitrilase_7 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=71.38 E-value=21 Score=32.75 Aligned_cols=73 Identities=15% Similarity=0.106 Sum_probs=40.7
Q ss_pred HHHHHCCCcEEEcCCCCCCCCCCCCccchhhhhccCCCCchHHHHHHHHHHHcCcEEEEeeeeeecCCe-eEEEEEEEcC
Q 017888 108 EEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDR-LYNTCCVFGS 186 (364)
Q Consensus 108 ~~A~~~gadLvVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~~~i~Iv~Gs~~~~~~~~-~yNsa~vi~~ 186 (364)
+..+.+|+|||+.|=.+...... ... ......++..|.+++++++..+..-..++. ..=.+.+++|
T Consensus 150 r~l~~~gadlil~p~~~~~~~~~----~~~---------~~~~~~~~~rA~e~~~~vv~~n~~g~~~~~~~~G~S~i~~p 216 (261)
T cd07585 150 RATALLGAEILFAPHATPGTTSP----KGR---------EWWMRWLPARAYDNGVFVAACNGVGRDGGEVFPGGAMILDP 216 (261)
T ss_pred HHHHHCCCCEEEECCccCCCCCc----chH---------HHHHHHhHHHHhhcCeEEEEecccccCCCceecceEEEECC
Confidence 44567899999999543221100 000 113334566778899998754222112222 2335677899
Q ss_pred CCcEEEE
Q 017888 187 DGKLIAK 193 (364)
Q Consensus 187 ~G~i~~~ 193 (364)
+|+++..
T Consensus 217 ~G~v~~~ 223 (261)
T cd07585 217 YGRVLAE 223 (261)
T ss_pred CCCEEec
Confidence 9998643
No 66
>PF00795 CN_hydrolase: Carbon-nitrogen hydrolase The Prosite family is specific to nitrilases The Prosite family is specific to UPF0012; InterPro: IPR003010 This family contains nitrilases that break carbon-nitrogen bonds and appear to be involved in the reduction of organic nitrogen compounds and ammonia production []. They all have distinct substrate specificity and include cyanide hydratases, aliphatic amidases, beta-alanine synthase, and a few other proteins with unknown molecular function. Sequence conservation over the entire length, as well as the similarity in the reactions catalyzed by the known enzymes in this family, points to a common catalytic mechanism. They have an invariant cysteine that is part of the catalytic site in nitrilases. Another highly conserved motif includes an invariant glutamic acid that might also be involved in catalysis [].; GO: 0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, 0006807 nitrogen compound metabolic process; PDB: 2E2L_D 2E2K_D 2DYV_A 2DYU_B 3KLC_B 3IW3_A 3KI8_A 3IVZ_A 1EMS_A 2GGK_B ....
Probab=70.52 E-value=21 Score=30.60 Aligned_cols=70 Identities=20% Similarity=0.222 Sum_probs=44.1
Q ss_pred HHHHHHhCCceEEEEeCCCCCCC--------Ch-----------hHHHHHHHHHHHhcCcEEEEecCCCCCCCCeeeeeE
Q 017888 245 LAMIYGARGAHLICYPGAFNMTT--------GP-----------LHWELLQRARATDNQLYVATCSPARDEGAGYVAWGH 305 (364)
Q Consensus 245 ~~r~~~~~Gadlil~ps~~~~~~--------~~-----------~~~~~~~~~rA~en~~~vv~~n~~g~~~~~~~~~G~ 305 (364)
+.+.++..|+|+|+.|-.+...- .. ..+.......|.+++++++....... +-.++-.
T Consensus 26 ~~~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~i~~G~~~~~---~~~~~N~ 102 (186)
T PF00795_consen 26 LIEEAARQGADLVVFPEMALPGYPNPGWCEDDFADLDEFAEPLDGPYLERLAELAKENGITIVAGIPERD---DGGLYNS 102 (186)
T ss_dssp HHHHHHHTTESEEEEETTTTTCS-GGGSGHSSHHHHHHHHBHSTSHHHHHHHHHHHHHTSEEEEEEEEEE---TTEEEEE
T ss_pred HHHHHHHCCCCEEEcCcchhcccccccccccccchhhhhccccccHHHHHHHHHHHhcCCcccccccccc---cccccce
Confidence 44556678999999998754321 01 12233456778899999886533221 1124566
Q ss_pred eEEECCCCCEeE
Q 017888 306 STLVGPFGEVLA 317 (364)
Q Consensus 306 S~Ii~p~G~il~ 317 (364)
..+++|+|+++.
T Consensus 103 ~~~~~~~g~~~~ 114 (186)
T PF00795_consen 103 AVVIDPDGEILG 114 (186)
T ss_dssp EEEEETTSEEEE
T ss_pred eEEEEeeecccc
Confidence 778899999884
No 67
>cd07577 Ph0642_like Pyrococcus horikoshii Ph0642 and related proteins, members of the nitrilase superfamily (putative class 13 nitrilases). Uncharacterized subgroup of the nitrilase superfamily. This superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. Pyrococcus horikoshii Ph0642 is a hypothetical protein belonging to this subgroup. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). This subgroup was classified as belonging to class 13, which represents proteins that at the time were difficult to place in a distinct similarity group. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=68.78 E-value=29 Score=31.74 Aligned_cols=66 Identities=18% Similarity=0.234 Sum_probs=38.9
Q ss_pred HHHHHCCCcEEEcCCCCCCCCCCCCccchhhhhccCCCCchHHHHHHHHHHHcCcEEEEeeeeeec----CC-eeEEEEE
Q 017888 108 EEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERS----GD-RLYNTCC 182 (364)
Q Consensus 108 ~~A~~~gadLvVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~~~i~Iv~Gs~~~~~----~~-~~yNsa~ 182 (364)
+..+.+|||||+.|-.+...+ ....++.-|.+++++++.-+..-.. ++ ...=.+.
T Consensus 151 r~~~~~Gadli~~ps~~~~~~--------------------~~~~~~~rA~en~~~vv~~n~~G~~~~~~~~~~~~G~S~ 210 (259)
T cd07577 151 RTLALKGADIIAHPANLVLPY--------------------CPKAMPIRALENRVFTITANRIGTEERGGETLRFIGKSQ 210 (259)
T ss_pred HHHHHcCCCEEEECCccCCch--------------------hhhhhhHhhhhcCceEEEEecCcccCCCCCCceEeeeeE
Confidence 344578999999996532110 1122455677889998753211111 12 2345678
Q ss_pred EEcCCCcEEEE
Q 017888 183 VFGSDGKLIAK 193 (364)
Q Consensus 183 vi~~~G~i~~~ 193 (364)
+++|+|+++..
T Consensus 211 i~~p~G~i~~~ 221 (259)
T cd07577 211 ITSPKGEVLAR 221 (259)
T ss_pred EECCCCCEEee
Confidence 89999998643
No 68
>cd07567 biotinidase_like biotinidase and vanins (class 4 nitrilases). These secondary amidases participate in vitamin recycling. Biotinidase (EC 3.5.1.12) has both a hydrolase and a transferase activity. It hydrolyzes free biocytin or small biotinyl-peptides produced during the proteolytic degradation of biotin-dependent carboxylases, to release free biotin (vitamin H), and it can transfer biotin to acceptor molecules such as histones. Biotinidase deficiency in humans is an autosomal recessive disorder characterized by neurological and cutaneous symptoms. This subgroup includes the three human vanins, vanin1-3. Vanins are ectoenzymes, Vanin-1, and -2 are membrane associated, vanin-3 is secreted. They are pantotheinases (EC 3.5.1.92, pantetheine hydrolase), which convert pantetheine, to pantothenic acid (vitamin B5) and cysteamine (2-aminoethanethiol, a potent anti-oxidant). They are potential targets for therapeutic intervention in inflammatory disorders. Vanin-1 deficient mice lacking
Probab=67.80 E-value=23 Score=33.71 Aligned_cols=67 Identities=13% Similarity=0.236 Sum_probs=41.0
Q ss_pred HHHC-CCcEEEcCCCCCCCCCCCCccchhhhhccCCCCchHHHHHHHHHHHcCcEEEEeeeeeecCCeeEEEEEEEcCC-
Q 017888 110 AAEK-GAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSD- 187 (364)
Q Consensus 110 A~~~-gadLvVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~~~i~Iv~Gs~~~~~~~~~yNsa~vi~~~- 187 (364)
.+.+ |+|+++.|=.|...... ..+...++.-|.+++++|+.-+.. .. ...+-.+.+++|+
T Consensus 192 la~~~GAdlil~paaw~~~~~~----------------~~w~~l~~arA~eN~~~vi~~N~~-g~-~~~~G~S~iv~P~~ 253 (299)
T cd07567 192 LVKKLGVDDIVFPTAWFSELPF----------------LTAVQIQQAWAYANGVNLLAANYN-NP-SAGMTGSGIYAGRS 253 (299)
T ss_pred HHHhCCCCEEEECCccCCCCCc----------------hhHHHHHHHHHHHcCceEEEecCC-CC-cCccccceEEcCCC
Confidence 3456 99999999654321110 013334567788999999865321 11 1223556778999
Q ss_pred CcEEEEe
Q 017888 188 GKLIAKH 194 (364)
Q Consensus 188 G~i~~~y 194 (364)
|+++...
T Consensus 254 G~v~a~~ 260 (299)
T cd07567 254 GALVYHY 260 (299)
T ss_pred CcEEEEe
Confidence 9998654
No 69
>TIGR03381 agmatine_aguB N-carbamoylputrescine amidase. Members of this family are N-carbamoylputrescine amidase (3.5.1.53). Bacterial genes are designated AguB. The AguAB pathway replaces SpeB for conversion of agmatine to putrescine in two steps rather than one.
Probab=67.64 E-value=46 Score=30.67 Aligned_cols=75 Identities=17% Similarity=0.247 Sum_probs=42.1
Q ss_pred HHHHHCCCcEEEcCCCCCCCCCCCCccchhhhhccCCCCchHHHHHHHHHHHcCcEEEEeeeeeec-----CCeeEEEEE
Q 017888 108 EEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERS-----GDRLYNTCC 182 (364)
Q Consensus 108 ~~A~~~gadLvVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~~~i~Iv~Gs~~~~~-----~~~~yNsa~ 182 (364)
+..+.+|||||+.|=.+.... .+.. . .. ...+...++..|.+++++++.-+..-.+ +..++=.+.
T Consensus 160 r~~a~~ga~lil~ps~~~~~~-~~~~--~-~~------~~~~~~~~~~rA~en~~~vv~an~~G~~~~~~~~~~~~G~S~ 229 (279)
T TIGR03381 160 RAMALMGAEVLFYPTAIGSEP-HDPD--L-DS------RDHWQRVMQGHAAANLVPVVAANRIGTEVGDGGEQTFYGSSF 229 (279)
T ss_pred HHHHHcCCCEEEecCccCCCC-cccc--c-cc------HHHHHHHHHHHHHhCCCeEEEEecccccCCCCCcceEeeeEE
Confidence 445678999999986542211 0000 0 00 0123344555678899998764321111 223456678
Q ss_pred EEcCCCcEEE
Q 017888 183 VFGSDGKLIA 192 (364)
Q Consensus 183 vi~~~G~i~~ 192 (364)
+++|+|+++.
T Consensus 230 i~~p~G~il~ 239 (279)
T TIGR03381 230 IADHTGELVA 239 (279)
T ss_pred EECCCCcEee
Confidence 8999999874
No 70
>cd07586 nitrilase_8 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=67.56 E-value=39 Score=31.03 Aligned_cols=73 Identities=18% Similarity=0.201 Sum_probs=42.0
Q ss_pred HHHCCCcEEEcCCCCCCCCCCCCccchhhhhccCCCCchHHHHHHHHHHHcCcEEEEeeeeeec-CCeeEEEEEEEcCCC
Q 017888 110 AAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERS-GDRLYNTCCVFGSDG 188 (364)
Q Consensus 110 A~~~gadLvVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~~~i~Iv~Gs~~~~~-~~~~yNsa~vi~~~G 188 (364)
...+|||+|+.|=.+........ ... ........+..|.+++++++.-+..-.+ +..++-.+.+++|+|
T Consensus 155 ~~~~ga~lil~ps~~~~~~~~~~---~~~-------~~~~~~~~~~rA~e~~~~vv~an~~G~~~~~~~~G~S~ii~p~G 224 (269)
T cd07586 155 LALDGADVIFIPANSPARGVGGD---FDN-------EENWETLLKFYAMMNGVYVVFANRVGVEDGVYFWGGSRVVDPDG 224 (269)
T ss_pred HHHCCCCEEEEeCCCccccCccc---cch-------hHHHHHHHHHHHHHhCCeEEEEeeecCcCCceEeCCcEEECCCC
Confidence 45789999999966422110000 000 0123445666788999998765332222 223445567889999
Q ss_pred cEEE
Q 017888 189 KLIA 192 (364)
Q Consensus 189 ~i~~ 192 (364)
+++.
T Consensus 225 ~il~ 228 (269)
T cd07586 225 EVVA 228 (269)
T ss_pred CEEE
Confidence 9874
No 71
>cd07573 CPA N-carbamoylputrescine amidohydrolase (CPA) (class 11 nitrilases). CPA (EC 3.5.1.53, also known as N-carbamoylputrescine amidase and carbamoylputrescine hydrolase) converts N-carbamoylputrescine to putrescine, a step in polyamine biosynthesis in plants and bacteria. This subgroup includes Arabidopsis thaliana CPA, also known as nitrilase-like 1 (NLP1), and Pseudomonas aeruginosa AguB. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 11. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer; P. aeruginosa AugB is a homohexamer, Arabidopsis thaliana NLP1 is a homooctomer.
Probab=67.03 E-value=35 Score=31.64 Aligned_cols=73 Identities=18% Similarity=0.252 Sum_probs=43.2
Q ss_pred HHHHHHHhCCceEEEEeCCCCCC--CC--------------hhHHHHHHHHHHHhcCcEEEEecCCCCCCCCeeeeeEeE
Q 017888 244 ELAMIYGARGAHLICYPGAFNMT--TG--------------PLHWELLQRARATDNQLYVATCSPARDEGAGYVAWGHST 307 (364)
Q Consensus 244 e~~r~~~~~Gadlil~ps~~~~~--~~--------------~~~~~~~~~~rA~en~~~vv~~n~~g~~~~~~~~~G~S~ 307 (364)
++.+.++++|+|+++.|-.+... .. ...+.......|.+++++++....... . +-.++=...
T Consensus 23 ~~i~~A~~~gadlivfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~i~iv~g~~~~~-~-~~~~yNs~~ 100 (284)
T cd07573 23 ELVREAAAQGAQIVCLQELFETPYFCQEEDEDYFDLAEPPIPGPTTARFQALAKELGVVIPVSLFEKR-G-NGLYYNSAV 100 (284)
T ss_pred HHHHHHHHCCCcEEEccccccCCCCcccccchhHHhccccCCCHHHHHHHHHHHHCCEEEEecceeeC-C-CCcEEEEEE
Confidence 56666778999999998863211 00 001223456678889998876432111 1 112345566
Q ss_pred EECCCCCEeEe
Q 017888 308 LVGPFGEVLAT 318 (364)
Q Consensus 308 Ii~p~G~il~~ 318 (364)
+++|+|+++..
T Consensus 101 v~~~~G~i~~~ 111 (284)
T cd07573 101 VIDADGSLLGV 111 (284)
T ss_pred EECCCCCEEeE
Confidence 78999998644
No 72
>cd07570 GAT_Gln-NAD-synth Glutamine aminotransferase (GAT, glutaminase) domain of glutamine-dependent NAD synthetases (class 7 and 8 nitrilases). Glutamine-dependent NAD synthetases are bifunctional enzymes, which have an N-terminal GAT domain and a C-terminal NAD+ synthetase domain. The GAT domain is a glutaminase (EC 3.5.1.2) which hydrolyses L-glutamine to L-glutamate and ammonia. The ammonia is used by the NAD+ synthetase domain in the ATP-dependent amidation of nicotinic acid adenine dinucleotide. Glutamine aminotransferases are categorized depending on their active site residues into different unrelated classes. This class of GAT domain belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this sub
Probab=67.01 E-value=23 Score=32.36 Aligned_cols=69 Identities=19% Similarity=0.144 Sum_probs=41.0
Q ss_pred HHHCCCcEEEcCCCCCCCCCCCCccchhhhhccCCCCchHHHHHHHHHHHcCcEEEEeeeeeecCCe-eEEEEEEEcCCC
Q 017888 110 AAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDR-LYNTCCVFGSDG 188 (364)
Q Consensus 110 A~~~gadLvVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~~~i~Iv~Gs~~~~~~~~-~yNsa~vi~~~G 188 (364)
.+.+|||||+.|=.+. +.... . ......++..|.+++++++.-+.....++. ..=.+.+++|+|
T Consensus 158 ~~~~ga~ll~~ps~~~--~~~~~----~---------~~~~~~~~~rA~en~~~vv~~n~~g~~~~~~~~G~S~ii~p~G 222 (261)
T cd07570 158 LALAGADLILNLSASP--FHLGK----Q---------DYRRELVSSRSARTGLPYVYVNQVGGQDDLVFDGGSFIADNDG 222 (261)
T ss_pred HHHcCCcEEEEeCCCc--cccCc----H---------HHHHHHHHHHHHHhCCcEEEEeCCCCCceEEEECceEEEcCCC
Confidence 4578999999996532 11100 0 012344677888999998865332222222 234467889999
Q ss_pred cEEEE
Q 017888 189 KLIAK 193 (364)
Q Consensus 189 ~i~~~ 193 (364)
+++..
T Consensus 223 ~vl~~ 227 (261)
T cd07570 223 ELLAE 227 (261)
T ss_pred CEEEe
Confidence 98753
No 73
>PRK13286 amiE acylamide amidohydrolase; Provisional
Probab=66.68 E-value=43 Score=32.59 Aligned_cols=71 Identities=17% Similarity=0.223 Sum_probs=43.1
Q ss_pred HHHHHHHCCCcEEEcCCCCCCCCCCCCccchhhhhccCCCCchHHHHHHHHHHHcCcEEEEeeeeeecCC-eeEEEEEEE
Q 017888 106 AIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGD-RLYNTCCVF 184 (364)
Q Consensus 106 ~i~~A~~~gadLvVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~~~i~Iv~Gs~~~~~~~-~~yNsa~vi 184 (364)
..+.++.+|||||+-|-.+.. .. .+ .....++..|.+++++++.-+..-.+++ .++=.+.++
T Consensus 174 ~~R~la~~GAelii~psa~~~----~~----~~---------~~~~~~rarA~eN~~yVv~aN~~G~~~~~~~~G~S~Iv 236 (345)
T PRK13286 174 IWRDCAMKGAELIVRCQGYMY----PA----KE---------QQVLVAKAMAWANNCYVAVANAAGFDGVYSYFGHSAII 236 (345)
T ss_pred HHHHHHHcCCeEEEEccccCC----Cc----hH---------HHHHHHHHHHHHCCCEEEEEecccccCCceeeeeEEEE
Confidence 334456889999998854321 10 00 1334466678899999876533222222 344567889
Q ss_pred cCCCcEEEE
Q 017888 185 GSDGKLIAK 193 (364)
Q Consensus 185 ~~~G~i~~~ 193 (364)
+|+|+++..
T Consensus 237 dp~G~vla~ 245 (345)
T PRK13286 237 GFDGRTLGE 245 (345)
T ss_pred CCCCcEEEe
Confidence 999998754
No 74
>cd07571 ALP_N-acyl_transferase Apolipoprotein N-acyl transferase (class 9 nitrilases). ALP N-acyl transferase (Lnt), is an essential membrane-bound enzyme in gram-negative bacteria, which catalyzes the N-acylation of apolipoproteins, the final step in lipoprotein maturation. This is a reverse amidase (i.e. condensation) reaction. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 9.
Probab=65.41 E-value=24 Score=32.72 Aligned_cols=72 Identities=18% Similarity=0.158 Sum_probs=42.1
Q ss_pred HHHHHHhCCceEEEEeCCCCCC--CChhHHHHHHHHHHHhcCcEEEEecCCCCCCCCeeeeeEeEEECCCCCEeE
Q 017888 245 LAMIYGARGAHLICYPGAFNMT--TGPLHWELLQRARATDNQLYVATCSPARDEGAGYVAWGHSTLVGPFGEVLA 317 (364)
Q Consensus 245 ~~r~~~~~Gadlil~ps~~~~~--~~~~~~~~~~~~rA~en~~~vv~~n~~g~~~~~~~~~G~S~Ii~p~G~il~ 317 (364)
+.+.++++|+|+++.|-.+... ..........+..|.+++++++........+ +..++-...+++|+|+++.
T Consensus 31 ~i~~a~~~ga~lvvfPE~~l~g~~~~~~~~~~~l~~~ak~~~i~ii~G~~~~~~~-~~~~~Ns~~~i~~~G~i~~ 104 (270)
T cd07571 31 LTRELADEKPDLVVWPETALPFDLQRDPDALARLARAARAVGAPLLTGAPRREPG-GGRYYNSALLLDPGGGILG 104 (270)
T ss_pred HHhhcccCCCCEEEecCCcCCcccccCHHHHHHHHHHHHhcCCeEEEeeeeeccC-CCceEEEEEEECCCCCCcC
Confidence 4444556799999998864321 1111223344566788999988754322111 1123455678899998653
No 75
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=64.89 E-value=25 Score=32.46 Aligned_cols=64 Identities=16% Similarity=0.172 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHCCCcEEEcCCCCCCCCCCCCccchhhhhccCCCCchHHHHHHHHHHHcCcEEEEe
Q 017888 96 KERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGG 167 (364)
Q Consensus 96 ~~~n~~~i~~~i~~A~~~gadLvVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~~~i~Iv~G 167 (364)
.++.++.+.+.++.|+..|++.|+++-.. .++... ..+..+.. ...++.+.+.|+++||.|.+=
T Consensus 85 r~~~~~~~~~~i~~a~~lGa~~i~~~~~~-~~~~~~-~~~~~~~~------~~~l~~l~~~a~~~gv~l~iE 148 (275)
T PRK09856 85 RRESLDMIKLAMDMAKEMNAGYTLISAAH-AGYLTP-PNVIWGRL------AENLSELCEYAENIGMDLILE 148 (275)
T ss_pred HHHHHHHHHHHHHHHHHhCCCEEEEcCCC-CCCCCC-HHHHHHHH------HHHHHHHHHHHHHcCCEEEEe
Confidence 45778899999999999999998886442 233211 11111111 247788889999999988654
No 76
>PLN02504 nitrilase
Probab=62.12 E-value=52 Score=31.94 Aligned_cols=71 Identities=21% Similarity=0.207 Sum_probs=42.1
Q ss_pred HHHHHHhCCceEEEEeCCCCCC--C----C----------hhH--------------HHHHHHHHHHhcCcEEEEecCCC
Q 017888 245 LAMIYGARGAHLICYPGAFNMT--T----G----------PLH--------------WELLQRARATDNQLYVATCSPAR 294 (364)
Q Consensus 245 ~~r~~~~~Gadlil~ps~~~~~--~----~----------~~~--------------~~~~~~~rA~en~~~vv~~n~~g 294 (364)
+...++++|||||+.|-.|... . . ... .....+..|.+++++++......
T Consensus 49 li~eAa~~gadLIVfPE~~ltGyp~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~i~~l~~~A~~~~i~iv~G~~e~ 128 (346)
T PLN02504 49 LIAEAAAYGSQLVVFPEAFIGGYPRGSTFGLAIGDRSPKGREDFRKYHASAIDVPGPEVDRLAAMAGKYKVYLVMGVIER 128 (346)
T ss_pred HHHHHHHCCCeEEEeCccccccCCcchhhccccccccchhHHHHHHHHHhcccCCCHHHHHHHHHHHHcCCEEEEeeeec
Confidence 4555667899999998864211 0 0 000 11223456788999987653221
Q ss_pred CCCCCeeeeeEeEEECCCCCEeEe
Q 017888 295 DEGAGYVAWGHSTLVGPFGEVLAT 318 (364)
Q Consensus 295 ~~~~~~~~~G~S~Ii~p~G~il~~ 318 (364)
.++ .++-...+++|+|+++..
T Consensus 129 --~~~-~~yNsa~~i~~~G~i~~~ 149 (346)
T PLN02504 129 --DGY-TLYCTVLFFDPQGQYLGK 149 (346)
T ss_pred --CCC-ceEEEEEEECCCCCEEeE
Confidence 112 245667788999998754
No 77
>cd07569 DCase N-carbamyl-D-amino acid amidohydrolase (DCase, class 6 nitrilases). DCase hydrolyses N-carbamyl-D-amino acids to produce D-amino acids. It is an important biocatalyst in the pharmaceutical industry, producing useful D-amino acids for example in the preparation of beta-lactam antibiotics. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 6. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. Agrobacterium radiobacter DCase forms a tetramer (dimer of dimers). Some DCases may form trimers.
Probab=60.98 E-value=53 Score=30.97 Aligned_cols=75 Identities=20% Similarity=0.150 Sum_probs=42.5
Q ss_pred HHHHHHHhCCceEEEEeCCCCCC--C-----Ch---hH---------HHHHHHHHHHhcCcEEEEecCCCCCCCC-eeee
Q 017888 244 ELAMIYGARGAHLICYPGAFNMT--T-----GP---LH---------WELLQRARATDNQLYVATCSPARDEGAG-YVAW 303 (364)
Q Consensus 244 e~~r~~~~~Gadlil~ps~~~~~--~-----~~---~~---------~~~~~~~rA~en~~~vv~~n~~g~~~~~-~~~~ 303 (364)
++.+.++.+|||||+.|-.+... . .. .. ........|.+++++++.....-..+++ ..++
T Consensus 29 ~~i~~A~~~gadlivfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~iv~G~~~~~~~~~~~~~y 108 (302)
T cd07569 29 ALLEEAASRGAQLVVFPELALTTFFPRWYFPDEAELDSFFETEMPNPETQPLFDRAKELGIGFYLGYAELTEDGGVKRRF 108 (302)
T ss_pred HHHHHHHhCCCcEEEcccccccCcccccccCChHHhhhhhhhcCCChhHHHHHHHHHHhCeEEEEeceeecCCCCcceee
Confidence 45566778999999998864221 0 00 01 1112345677899998865321111111 1234
Q ss_pred eEeEEECCCCCEeEe
Q 017888 304 GHSTLVGPFGEVLAT 318 (364)
Q Consensus 304 G~S~Ii~p~G~il~~ 318 (364)
=...+++|+|+++..
T Consensus 109 Nsa~~i~~~G~i~~~ 123 (302)
T cd07569 109 NTSILVDKSGKIVGK 123 (302)
T ss_pred eEEEEECCCCCEeee
Confidence 456788999998754
No 78
>TIGR00530 AGP_acyltrn 1-acyl-sn-glycerol-3-phosphate acyltransferases. 1-acyl-sn-glycerol-3-phosphate acyltransferase is also called 1-AGP acyltransferase, lysophosphatidic acid acyltransferase, and LPA acyltransferase.
Probab=60.16 E-value=34 Score=27.19 Aligned_cols=52 Identities=23% Similarity=0.159 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHCCCcEEEcCCCCCCCCCCCCccchhhhhccCCCCchHHHHHHHHHHHcCcEEEE
Q 017888 100 IAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVG 166 (364)
Q Consensus 100 ~~~i~~~i~~A~~~gadLvVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~~~i~Iv~ 166 (364)
.....+.+.++.++|..+++|||...... ..+. ++..-...+|++.++.|+.
T Consensus 75 ~~~~~~~~~~~l~~g~~v~ifPeG~~~~~--~~~~-------------~f~~g~~~la~~~~~pvvp 126 (130)
T TIGR00530 75 IATALKAAIEVLKQGRSIGVFPEGTRSRG--RDIL-------------PFKKGAFHIAIKAGVPILP 126 (130)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCC--CCCC-------------CcchhHHHHHHHcCCCEEe
Confidence 34445566667788999999999975421 1111 2334466688888888774
No 79
>cd07578 nitrilase_1_R1 First nitrilase domain of an uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). Members of this subgroup have two nitrilase domains. This is the first of those two domains. The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=59.53 E-value=52 Score=30.10 Aligned_cols=70 Identities=21% Similarity=0.273 Sum_probs=39.0
Q ss_pred HHHHHHHhCCceEEEEeCCCCCCC---Chh-----------HHHHHHHHHHHhcCcEEEEecCCCCCCCCeeeeeEeEEE
Q 017888 244 ELAMIYGARGAHLICYPGAFNMTT---GPL-----------HWELLQRARATDNQLYVATCSPARDEGAGYVAWGHSTLV 309 (364)
Q Consensus 244 e~~r~~~~~Gadlil~ps~~~~~~---~~~-----------~~~~~~~~rA~en~~~vv~~n~~g~~~~~~~~~G~S~Ii 309 (364)
++.+.++++|+|+|+.|-.+...- ... ......+..|.+++++++.........++ .++=...++
T Consensus 24 ~~i~~A~~~gadlivfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~ii~G~~~~~~~~~-~~yNs~~vi 102 (258)
T cd07578 24 ALCEEAARAGARLIVTPEMATTGYCWYDRAEIAPFVEPIPGPTTARFAELAREHDCYIVVGLPEVDSRSG-IYYNSAVLI 102 (258)
T ss_pred HHHHHHHhCCCCEEEcccccccCCCcCCHHHhhhhcccCCCHHHHHHHHHHHHcCcEEEEecceecCCCC-CeeEEEEEE
Confidence 345556678999999988642110 000 01223455677899988865432111112 233455688
Q ss_pred CCCCC
Q 017888 310 GPFGE 314 (364)
Q Consensus 310 ~p~G~ 314 (364)
+|+|.
T Consensus 103 ~~~g~ 107 (258)
T cd07578 103 GPSGV 107 (258)
T ss_pred CCCCc
Confidence 99984
No 80
>PRK13981 NAD synthetase; Provisional
Probab=59.05 E-value=41 Score=34.74 Aligned_cols=71 Identities=27% Similarity=0.403 Sum_probs=41.9
Q ss_pred HHHHHCCCcEEEcCCCCCCCCCCCCccchhhhhccCCCCchHHHHHHHHHHHcCcEEEEeeeeeecCCeeE-EEEEEEcC
Q 017888 108 EEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLY-NTCCVFGS 186 (364)
Q Consensus 108 ~~A~~~gadLvVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~~~i~Iv~Gs~~~~~~~~~y-Nsa~vi~~ 186 (364)
+..+.+|||||+.|=.+ +|.... . ......++..|.+++++++.-+..-..++..| -.+.+++|
T Consensus 155 r~la~~Gadlil~psa~--~~~~~~-----~--------~~~~~~~~~rA~En~~~vv~aN~vG~~~~~~f~G~S~i~dp 219 (540)
T PRK13981 155 ETLAEAGAELLLVPNAS--PYHRGK-----P--------DLREAVLRARVRETGLPLVYLNQVGGQDELVFDGASFVLNA 219 (540)
T ss_pred HHHHHCCCcEEEEcCCC--cccCCc-----H--------HHHHHHHHHHHHHhCCeEEEEecccCCCceEEeCceEEECC
Confidence 44567899999999432 221111 0 01234577788999998876432212222333 45677889
Q ss_pred CCcEEEE
Q 017888 187 DGKLIAK 193 (364)
Q Consensus 187 ~G~i~~~ 193 (364)
+|+++..
T Consensus 220 ~G~il~~ 226 (540)
T PRK13981 220 DGELAAR 226 (540)
T ss_pred CCCEeee
Confidence 9988643
No 81
>PRK15018 1-acyl-sn-glycerol-3-phosphate acyltransferase; Provisional
Probab=58.54 E-value=34 Score=31.53 Aligned_cols=58 Identities=10% Similarity=0.107 Sum_probs=39.1
Q ss_pred cCHHHHHHHHHHHHHHHHHCCCcEEEcCCCCCCCCCCCCccchhhhhccCCCCchHHHHHHHHHHHcCcEEEE
Q 017888 94 ADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVG 166 (364)
Q Consensus 94 ~d~~~n~~~i~~~i~~A~~~gadLvVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~~~i~Iv~ 166 (364)
.+.....+.+.+.++...+.|..++||||..-+... .+ .++-.-...+|.+.++.|+.
T Consensus 119 ~~~~~~~~~l~~~~~~l~~~g~sv~IFPEGTRs~~g--~l-------------~~Fk~Ga~~lA~~~~~PIvP 176 (245)
T PRK15018 119 NNRTKAHGTIAEVVNHFKKRRISIWMFPEGTRSRGR--GL-------------LPFKTGAFHAAIAAGVPIIP 176 (245)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCEEEEECCccCCCCC--CC-------------CCccHHHHHHHHHcCCCEEE
Confidence 455566666777777777789999999999765321 11 12334466788888988765
No 82
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=57.46 E-value=42 Score=31.04 Aligned_cols=64 Identities=20% Similarity=0.183 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHCCCcEEEcCCCCCCCCCCCCccchhhhhccCCCCchHHHHHHHHHHHcCcEEEEe
Q 017888 96 KERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGG 167 (364)
Q Consensus 96 ~~~n~~~i~~~i~~A~~~gadLvVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~~~i~Iv~G 167 (364)
.++.++.+.+.++.|...|++.|++|-.. ..+.... ....+.. ...++.+.++|+++||.|.+=
T Consensus 89 r~~~~~~~~~~i~~a~~lG~~~v~~~~~~-~~~~~~~-~~~~~~~------~~~l~~l~~~a~~~gv~l~lE 152 (284)
T PRK13210 89 RERALEIMKKAIRLAQDLGIRTIQLAGYD-VYYEEKS-EETRQRF------IEGLAWAVEQAAAAQVMLAVE 152 (284)
T ss_pred HHHHHHHHHHHHHHHHHhCCCEEEECCcc-ccccccc-HHHHHHH------HHHHHHHHHHHHHhCCEEEEE
Confidence 35678888999999999999999986221 1111111 1111111 136677888889999988763
No 83
>smart00563 PlsC Phosphate acyltransferases. Function in phospholipid biosynthesis and have either glycerolphosphate, 1-acylglycerolphosphate, or 2-acylglycerolphosphoethanolamine acyltransferase activities. Tafazzin, the product of the gene mutated in patients with Barth syndrome, is a member of this family.
Probab=56.93 E-value=39 Score=26.07 Aligned_cols=53 Identities=23% Similarity=0.186 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHCCCcEEEcCCCCCCCCCCCCccchhhhhccCCCCchHHHHHHHHHHHcCcEEEE
Q 017888 98 RNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVG 166 (364)
Q Consensus 98 ~n~~~i~~~i~~A~~~gadLvVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~~~i~Iv~ 166 (364)
.+.+.+.+.++ +.+.|..+++|||....... ... +...-...+|++.+..|+.
T Consensus 60 ~~~~~~~~~~~-~l~~~~~~~ifPeG~~~~~~--~~~-------------~~~~g~~~la~~~~~~v~P 112 (118)
T smart00563 60 LARAALREAVR-LLRDGGWLLIFPEGTRSRPG--KLL-------------PFKKGAARLALEAGVPIVP 112 (118)
T ss_pred HHHHHHHHHHH-HHhCCCEEEEeCCcccCCCC--CcC-------------CCcccHHHHHHHcCCCEEe
Confidence 34444544443 56779999999999754321 000 1223356677887766553
No 84
>COG0388 Predicted amidohydrolase [General function prediction only]
Probab=55.68 E-value=72 Score=29.41 Aligned_cols=66 Identities=20% Similarity=0.353 Sum_probs=43.7
Q ss_pred HHCCCcEEEcCCCCCCCCCCCCccchhhhhccCCCCchHHHHHHHHHHHcCcEEEEeeeeeecC--CeeEEEEEEEcCCC
Q 017888 111 AEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERSG--DRLYNTCCVFGSDG 188 (364)
Q Consensus 111 ~~~gadLvVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~~~i~Iv~Gs~~~~~~--~~~yNsa~vi~~~G 188 (364)
+..|+++|+.|-.+..... .+ .+...++.-|-+++++++..+....++ ...+-.+++++|+|
T Consensus 163 a~~Gaeii~~p~a~~~~~~-------~~---------~w~~l~~arA~en~~~vv~~n~~g~~~~~~~~~G~S~i~~p~G 226 (274)
T COG0388 163 ALGGAELLLVPAAWPAERG-------LD---------HWEVLLRARAIENQVYVLAANRAGFDGAGLEFCGHSAIIDPDG 226 (274)
T ss_pred HhcCCeEEEEcCCCCCccc-------HH---------HHHHHHHHHhhhcCceEEEecccCCCCCccEEecceEEECCCc
Confidence 4559999999998765432 01 133335666778999988763322222 35777889999999
Q ss_pred cEEE
Q 017888 189 KLIA 192 (364)
Q Consensus 189 ~i~~ 192 (364)
+++.
T Consensus 227 ~v~~ 230 (274)
T COG0388 227 EVLA 230 (274)
T ss_pred cEEe
Confidence 8654
No 85
>cd07579 nitrilase_1_R2 Second nitrilase domain of an uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). Members of this subgroup have two nitrilase domains. This is the second of those two domains. The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=55.25 E-value=83 Score=29.37 Aligned_cols=68 Identities=25% Similarity=0.244 Sum_probs=40.2
Q ss_pred HHHHHHHhCCceEEEEeCCCCC--CCC-------hhHHHHHHHHHHHhcCcEEEEecCCCCCCCCeeeeeEeEEECCCCC
Q 017888 244 ELAMIYGARGAHLICYPGAFNM--TTG-------PLHWELLQRARATDNQLYVATCSPARDEGAGYVAWGHSTLVGPFGE 314 (364)
Q Consensus 244 e~~r~~~~~Gadlil~ps~~~~--~~~-------~~~~~~~~~~rA~en~~~vv~~n~~g~~~~~~~~~G~S~Ii~p~G~ 314 (364)
++.+.++++|+|+|+.|-.+.. ... ...+....+..|.+++++++...... .+ + .++=...+++|+|.
T Consensus 22 ~~i~~A~~~gadlvvfPE~~ltG~~~~~~~~~~~~~~~~~~l~~lA~~~~i~iv~G~~~~-~~-~-~~yNs~~vi~~~G~ 98 (279)
T cd07579 22 RLAAEAKATGAELVVFPELALTGLDDPASEAESDTGPAVSALRRLARRLRLYLVAGFAEA-DG-D-GLYNSAVLVGPEGL 98 (279)
T ss_pred HHHHHHHHCCCCEEEeCCccccCCCChHHhcccCCCHHHHHHHHHHHHcCeEEEEeceEc-cC-C-cEEEEEEEEeCCee
Confidence 3455566789999999876422 110 01233345677889999988653221 11 1 23455678899984
No 86
>PF01553 Acyltransferase: Acyltransferase; InterPro: IPR002123 This family contains acyltransferases involved in phospholipid biosynthesis and other proteins of unknown function []. This domain is found in tafazzins, defects in which are the cause of Barth syndrome; a severe inherited disorder which is often fatal in childhood and is characterised by cardiac and skeletal abnormalities. Phospholipid/glycerol acyltransferase is not found in the viruses or the archaea and is under represented in the bacteria. Bacterial glycerol-phosphate acyltransferases are involved in membrane biogenesis since they use fatty acid chains to form the first membrane phospholipids [].; GO: 0016746 transferase activity, transferring acyl groups, 0008152 metabolic process; PDB: 1IUQ_A 1K30_A.
Probab=54.87 E-value=27 Score=27.90 Aligned_cols=51 Identities=25% Similarity=0.266 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHCCCcEEEcCCCCCCCCCCCCccchhhhhccCCCCchHHHHHHHHHHHcCcEEE
Q 017888 100 IAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIV 165 (364)
Q Consensus 100 ~~~i~~~i~~A~~~gadLvVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~~~i~Iv 165 (364)
.....+.+.+..++|--+++|||...... .. . .+.-.-...++.+.+++|+
T Consensus 77 ~~~~~~~~~~~l~~~~~i~ifPEG~~~~~--~~---~----------~~~~~G~~~~a~~~~~~iv 127 (132)
T PF01553_consen 77 NRKALKDIKEILRKGGSIVIFPEGTRSRS--GE---L----------LPFKKGAFHIALKAKVPIV 127 (132)
T ss_dssp HHHHHHHHHHHHHC---EEE-TT-S---B-------B--------------HHHHHHHHHH-----
T ss_pred cchhHHHHHHHhhhcceeeecCCccCcCC--Cc---c----------CCccHHHHHHHHHcCCccc
Confidence 44444555556677666999999954322 00 1 1233446667777777765
No 87
>PF09587 PGA_cap: Bacterial capsule synthesis protein PGA_cap; InterPro: IPR019079 CapA is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein [].
Probab=53.96 E-value=1.4e+02 Score=27.17 Aligned_cols=73 Identities=10% Similarity=0.000 Sum_probs=47.9
Q ss_pred CCCeEEecCCeeEEEEEeccCcc-----------------------------cHHHHH--HHhCCceEEEEeCCCCCC--
Q 017888 220 ETPTIVDTDVGRIGIGICYDIRF-----------------------------QELAMI--YGARGAHLICYPGAFNMT-- 266 (364)
Q Consensus 220 ~~~~vf~~~~~rigv~IC~D~~f-----------------------------pe~~r~--~~~~Gadlil~ps~~~~~-- 266 (364)
..+.++++++.|||++-|.+... ..+.+. .+++++|++|+..-|...
T Consensus 119 ~~p~i~~~~g~kia~l~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~r~~~D~vIv~~HwG~e~~ 198 (250)
T PF09587_consen 119 RRPAIIEVNGVKIAFLGYTDGENGYSSANGNRPYGFSYRPDKAGLNPNRPGIERIKEDIREARKKADVVIVSLHWGIEYE 198 (250)
T ss_pred cCeEEEEECCEEEEEEEEEcCCCCCccccccccccccccccccccccccchHHHHHHHHHHHhcCCCEEEEEeccCCCCC
Confidence 34688889999999998886641 112222 123679999998887643
Q ss_pred CChhHHHHHHHHHHHhcCcEEEEecC
Q 017888 267 TGPLHWELLQRARATDNQLYVATCSP 292 (364)
Q Consensus 267 ~~~~~~~~~~~~rA~en~~~vv~~n~ 292 (364)
..+..++.......++.|.-+|....
T Consensus 199 ~~p~~~q~~~a~~lidaGaDiIiG~H 224 (250)
T PF09587_consen 199 NYPTPEQRELARALIDAGADIIIGHH 224 (250)
T ss_pred CCCCHHHHHHHHHHHHcCCCEEEeCC
Confidence 23344555556667788888887653
No 88
>PRK13287 amiF formamidase; Provisional
Probab=50.92 E-value=91 Score=30.10 Aligned_cols=66 Identities=14% Similarity=0.142 Sum_probs=36.8
Q ss_pred CCceEEEEeCCCCCC--CC-----------hhHHHHHHHHHHHhcCcEEEEecCCCCCCCCeeeeeEeEEECCCCCEeEe
Q 017888 252 RGAHLICYPGAFNMT--TG-----------PLHWELLQRARATDNQLYVATCSPARDEGAGYVAWGHSTLVGPFGEVLAT 318 (364)
Q Consensus 252 ~Gadlil~ps~~~~~--~~-----------~~~~~~~~~~rA~en~~~vv~~n~~g~~~~~~~~~G~S~Ii~p~G~il~~ 318 (364)
.|+|||+.|-.+... .. ...........|.+++++++..-.. ...++..++=...+++|+|+++..
T Consensus 51 ~gadLVVfPE~~l~G~~~~~~~~~~~a~~~~g~~~~~l~~~a~~~~i~~~~g~~e-~~~~~~~~yNsa~vi~~~G~i~~~ 129 (333)
T PRK13287 51 PGLDLIVFPEYSTQGLNTKKWTTEEFLCTVDGPEVDAFAQACKENKVWGVFSIME-RNPDGNEPYNTAIIIDDQGEIILK 129 (333)
T ss_pred CCCcEEEcCCcccccCCccccchhhhcccCCCHHHHHHHHHHHHcCeEEEEeeEE-EcCCCCceEEEEEEECCCCcEEEE
Confidence 489999998764321 00 0012233456667889988753211 111111134466788999998755
No 89
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=50.61 E-value=51 Score=30.55 Aligned_cols=64 Identities=16% Similarity=0.154 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHCCCcEEEcCCCCCCCCCCCCccchhhhhccCCCCchHHHHHHHHHHHcCcEEEEe
Q 017888 96 KERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGG 167 (364)
Q Consensus 96 ~~~n~~~i~~~i~~A~~~gadLvVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~~~i~Iv~G 167 (364)
.+..++.+.+.++.|...|++.|+++..... +.... ....+.. .+.++.+.++|+++|+.+..=
T Consensus 89 r~~~~~~~~~~i~~a~~lG~~~v~~~~~~~~-~~~~~-~~~~~~~------~~~l~~l~~~A~~~Gv~l~lE 152 (279)
T TIGR00542 89 RQQGLEIMEKAIQLARDLGIRTIQLAGYDVY-YEEHD-EETRRRF------REGLKEAVELAARAQVTLAVE 152 (279)
T ss_pred HHHHHHHHHHHHHHHHHhCCCEEEecCcccc-cCcCC-HHHHHHH------HHHHHHHHHHHHHcCCEEEEe
Confidence 3466788899999999999999998743211 11111 1111111 136677888889999988763
No 90
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=49.60 E-value=61 Score=30.02 Aligned_cols=64 Identities=17% Similarity=0.178 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHCCCcEEEcCCCCCCCCCCCCccchhhhhccCCCCchHHHHHHHHHHHcCcEEEEe
Q 017888 96 KERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGG 167 (364)
Q Consensus 96 ~~~n~~~i~~~i~~A~~~gadLvVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~~~i~Iv~G 167 (364)
.+..++.+++.++.|+..|+..|+++-. ..++.. ......+.. -+.++.+.++|+++||.|.+=
T Consensus 94 r~~~~~~~~~~i~~a~~lG~~~i~~~~~-~~~~~~-~~~~~~~~~------~~~l~~l~~~A~~~GV~i~iE 157 (283)
T PRK13209 94 RAQALEIMRKAIQLAQDLGIRVIQLAGY-DVYYEQ-ANNETRRRF------IDGLKESVELASRASVTLAFE 157 (283)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEECCc-cccccc-cHHHHHHHH------HHHHHHHHHHHHHhCCEEEEe
Confidence 3566888999999999999999998521 111111 111111111 136677888889999877653
No 91
>cd07575 Xc-1258_like Xanthomonas campestris XC1258 and related proteins, members of the nitrilase superfamily (putative class 13 nitrilases). Uncharacterized subgroup belonging to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup either represents a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. XC1258 is a homotetramer.
Probab=46.68 E-value=1.1e+02 Score=27.90 Aligned_cols=68 Identities=19% Similarity=0.167 Sum_probs=38.7
Q ss_pred HHHHHHhCCceEEEEeCCCCC--CCChh--------HHHHHHHHHHHhcCcEEEEecCCCCCCCCeeeeeEeEEECCCCC
Q 017888 245 LAMIYGARGAHLICYPGAFNM--TTGPL--------HWELLQRARATDNQLYVATCSPARDEGAGYVAWGHSTLVGPFGE 314 (364)
Q Consensus 245 ~~r~~~~~Gadlil~ps~~~~--~~~~~--------~~~~~~~~rA~en~~~vv~~n~~g~~~~~~~~~G~S~Ii~p~G~ 314 (364)
+.+.++. |+|+++.|-.+.. ..... ......+..|.++++.++..-.. ..++ .++-...+++|+|+
T Consensus 25 ~i~~a~~-gadlvvfPE~~l~g~~~~~~~~~~~~~~~~~~~l~~la~~~~i~i~~~~~~-~~~~--~~yNs~~~i~~~G~ 100 (252)
T cd07575 25 KIEQLKE-KTDLIVLPEMFTTGFSMNAEALAEPMNGPTLQWMKAQAKKKGAAITGSLII-KEGG--KYYNRLYFVTPDGE 100 (252)
T ss_pred HHHHhhc-CCCEEEeCCcCcCCCCccHHHhhcccCChHHHHHHHHHHHCCeEEEEEEEE-ccCC--ceEEEEEEECCCCC
Confidence 4444555 9999999886422 11101 12223567788899877643211 1111 24556678899998
Q ss_pred Ee
Q 017888 315 VL 316 (364)
Q Consensus 315 il 316 (364)
+.
T Consensus 101 i~ 102 (252)
T cd07575 101 VY 102 (252)
T ss_pred EE
Confidence 75
No 92
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=46.05 E-value=44 Score=30.95 Aligned_cols=63 Identities=17% Similarity=0.135 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHCCCcEEEcCCCCCCCCCCCCccchhhhhccCCCCchHHHHHHHHHHHcCcEEEEe
Q 017888 96 KERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGG 167 (364)
Q Consensus 96 ~~~n~~~i~~~i~~A~~~gadLvVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~~~i~Iv~G 167 (364)
.+..++.+.+.++.|...|++.+++.-....+ .......+.. .+.++.+.+.|++++|.+.+=
T Consensus 80 r~~~~~~~~~~i~~A~~lG~~~v~~~~g~~~~---~~~~~~~~~~------~~~l~~l~~~a~~~gi~l~lE 142 (279)
T cd00019 80 REKSIERLKDEIERCEELGIRLLVFHPGSYLG---QSKEEGLKRV------IEALNELIDKAETKGVVIALE 142 (279)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEECCCCCCC---CCHHHHHHHH------HHHHHHHHHhccCCCCEEEEe
Confidence 57778999999999999999998874332221 1111111110 135566666777889887754
No 93
>PRK10438 C-N hydrolase family amidase; Provisional
Probab=43.76 E-value=1e+02 Score=28.27 Aligned_cols=64 Identities=17% Similarity=0.249 Sum_probs=38.7
Q ss_pred CCCcEEEcCCCCCCCCCCCCccchhhhhccCCCCchHHHHHHHHHHHcCcEEEEeeeeeecC--CeeEEEEEEEcCCCcE
Q 017888 113 KGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERSG--DRLYNTCCVFGSDGKL 190 (364)
Q Consensus 113 ~gadLvVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~~~i~Iv~Gs~~~~~~--~~~yNsa~vi~~~G~i 190 (364)
+|+|+|+.|=.+.... . ..+...++.-|.+++++++.-+..-.++ ..++=.+.+++|+|++
T Consensus 154 ~gad~i~~~s~~~~~~--------~---------~~~~~~~~aRA~En~~~vv~~n~~G~~~~~~~~~G~S~ivdP~G~v 216 (256)
T PRK10438 154 NDYDLALYVANWPAPR--------S---------LHWQTLLTARAIENQAYVAGCNRVGSDGNGHHYRGDSRIINPQGEI 216 (256)
T ss_pred cCCCEEEEecCCCCCc--------h---------HHHHHHHHHHHHhcCcEEEEecccccCCCCCEEcCceEEECCCCcE
Confidence 5899999986643110 0 0133345667889999987653222221 1234466789999998
Q ss_pred EEE
Q 017888 191 IAK 193 (364)
Q Consensus 191 ~~~ 193 (364)
+..
T Consensus 217 l~~ 219 (256)
T PRK10438 217 IAT 219 (256)
T ss_pred EEE
Confidence 754
No 94
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=43.03 E-value=1.5e+02 Score=30.57 Aligned_cols=59 Identities=14% Similarity=0.036 Sum_probs=41.7
Q ss_pred eeEEEEEeccCcccHHHHHHHhCCceEEEEeCCCCCCCChhHHHHHHHHHHHhcCcEEEEe
Q 017888 230 GRIGIGICYDIRFQELAMIYGARGAHLICYPGAFNMTTGPLHWELLQRARATDNQLYVATC 290 (364)
Q Consensus 230 ~rigv~IC~D~~fpe~~r~~~~~Gadlil~ps~~~~~~~~~~~~~~~~~rA~en~~~vv~~ 290 (364)
.++|.+|+-.-...|-++.+.+.|+|+|++-++-.. ....|..+...++.--+..++..
T Consensus 237 l~vgaavg~~~~~~~r~~~l~~ag~d~i~iD~~~g~--~~~~~~~i~~ik~~~p~~~vi~g 295 (505)
T PLN02274 237 LLVGAAIGTRESDKERLEHLVKAGVDVVVLDSSQGD--SIYQLEMIKYIKKTYPELDVIGG 295 (505)
T ss_pred EEEEEEEcCCccHHHHHHHHHHcCCCEEEEeCCCCC--cHHHHHHHHHHHHhCCCCcEEEe
Confidence 478889987655668888899999999998775332 33567777666665545666543
No 95
>KOG0806 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism]
Probab=42.73 E-value=17 Score=34.42 Aligned_cols=42 Identities=21% Similarity=0.313 Sum_probs=32.0
Q ss_pred HHcCcEEEEeeeeeecCCeeEEEEEEEcCCCcEEEEeeccccCC
Q 017888 158 RLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFD 201 (364)
Q Consensus 158 ~~~~i~Iv~Gs~~~~~~~~~yNsa~vi~~~G~i~~~y~K~~L~~ 201 (364)
+.++...+.+ +..++...||+.++||-+|..+.+|+|.+++.
T Consensus 110 k~yns~~~~~--~~g~l~~~yrk~hlFD~d~~~~~ry~e~~~~~ 151 (298)
T KOG0806|consen 110 KLYNSCADSS--CPGDGLAKYRKNHLFDTDGPGVIRYRESHLLS 151 (298)
T ss_pred cccCcccccC--CCcchhheeeeeEEeccCCccceeeeeeeccC
Confidence 4455555544 33455678999999999999999999999875
No 96
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=42.28 E-value=56 Score=30.39 Aligned_cols=98 Identities=14% Similarity=0.167 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHHHCCCcEEEcCCCCCCCCCCCCccchhhhhccC----CCCchHHHHHHHHHHHcCcEEEEeeeeeec
Q 017888 98 RNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAG----GDASPSTAMLSEVARLLKITIVGGSIPERS 173 (364)
Q Consensus 98 ~n~~~i~~~i~~A~~~gadLvVfPE~~l~gy~~~~~~~~~~~~~~~----~~~~~~~~~l~~lA~~~~i~Iv~Gs~~~~~ 173 (364)
+-++++.+.+++..+ ...+-+.|=+......-+.....++.+..- .---=+.++++++|+++.+|...| ++.+
T Consensus 157 dELeKm~~~Vd~i~~-~~~~~~~PlFIsvDPeRD~~~~~~eY~~eF~pkllGLTGT~eqvk~vak~yRVYfs~g--p~d~ 233 (280)
T KOG2792|consen 157 DELEKMSAVVDEIEA-KPGLPPVPLFISVDPERDSVEVVAEYVSEFHPKLLGLTGTTEQVKQVAKKYRVYFSTG--PKDE 233 (280)
T ss_pred HHHHHHHHHHHHHhc-cCCCCccceEEEeCcccCCHHHHHHHHHhcChhhhcccCCHHHHHHHHHHhEEeeccC--CCCC
Confidence 447888888876543 333333354433222222222222221110 000125688999999999999887 4332
Q ss_pred CCe----eEEEEEEEcCCCcEEEEeeccc
Q 017888 174 GDR----LYNTCCVFGSDGKLIAKHRKIH 198 (364)
Q Consensus 174 ~~~----~yNsa~vi~~~G~i~~~y~K~~ 198 (364)
+.. --.-+++++|+|+.+.-|-+.+
T Consensus 234 ~~DYlVDHSi~mYLidPeg~Fvd~~GrN~ 262 (280)
T KOG2792|consen 234 DQDYLVDHSIFMYLIDPEGEFVDYYGRNY 262 (280)
T ss_pred CCCeeeeeeEEEEEECCCcceehhhcccC
Confidence 221 1245688999999876555544
No 97
>COG0252 AnsB L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D [Amino acid transport and metabolism / Translation, ribosomal structure and biogenesis]
Probab=41.83 E-value=1.3e+02 Score=29.44 Aligned_cols=63 Identities=19% Similarity=0.058 Sum_probs=46.0
Q ss_pred eeEEEEEeccCcccHHHHH-HHhCCceEEEEeCCCCCCCChhHHHHHHHHHHHhcCcEEEEecCCC
Q 017888 230 GRIGIGICYDIRFQELAMI-YGARGAHLICYPGAFNMTTGPLHWELLQRARATDNQLYVATCSPAR 294 (364)
Q Consensus 230 ~rigv~IC~D~~fpe~~r~-~~~~Gadlil~ps~~~~~~~~~~~~~~~~~rA~en~~~vv~~n~~g 294 (364)
.|++++.+|-...+++.+. +...|++-|+.-+...-......+. .-.++.+.|++||++..+.
T Consensus 230 ~~V~ii~~ypG~~~~~i~~a~~~~g~~GiVie~~G~G~~~~~~~~--~i~~~~~~gi~VV~sSr~~ 293 (351)
T COG0252 230 PKVVIIKYYPGLSSSLIDSALLSSGAKGLVLEGTGSGNVTPALIE--SIERASKRGIPVVYSSRCL 293 (351)
T ss_pred CcEEEEEeCCCCCHHHHHHHHHhcCCCEEEEEEECCCCCChHHHH--HHHHHHHCCCeEEEEeccC
Confidence 6999999999999988884 6689998887755322122233333 3467888899999998764
No 98
>PF01784 NIF3: NIF3 (NGG1p interacting factor 3); InterPro: IPR002678 This family contains several NIF3 (NGG1p interacting factor 3) protein homologues. NIF3 interacts with the yeast transcriptional coactivator NGG1p which is part of the ADA complex, the exact function of this interaction is unknown [][].; PDB: 1NMO_F 1NMP_B 2GX8_C 2FYW_B 2NYD_A 3LNL_A 2YYB_A 3RXY_F.
Probab=40.65 E-value=92 Score=28.49 Aligned_cols=58 Identities=17% Similarity=0.101 Sum_probs=35.5
Q ss_pred EEEEeccCcccHHHHHHHhCCceEEEE--eCCCCCCCCh--hHHHHHHHHHHHhcCcEEEEec
Q 017888 233 GIGICYDIRFQELAMIYGARGAHLICY--PGAFNMTTGP--LHWELLQRARATDNQLYVATCS 291 (364)
Q Consensus 233 gv~IC~D~~fpe~~r~~~~~Gadlil~--ps~~~~~~~~--~~~~~~~~~rA~en~~~vv~~n 291 (364)
++++|-|.. ++..+++.+.|+|+||. |.-|...... .....-....+++|++.|.++-
T Consensus 34 ~V~~~ld~t-~~vi~~A~~~~~dlIItHHP~~f~~~~~~~~~~~~~~~~~~li~~~I~vy~~H 95 (241)
T PF01784_consen 34 KVLVALDAT-PEVIEEAIEKGADLIITHHPLFFKPLKSLTGDDYKGKIIEKLIKNGISVYSAH 95 (241)
T ss_dssp EEEEESS-S-HHHHHHHHHTT-SEEEESS-SSSSTSSHCHCHSHHHHHHHHHHHTT-EEEEES
T ss_pred EEEEEEeCC-HHHHHHHHHcCCCEEEEcCchhhcCCccccccchhhHHHHHHHHCCCEEEEec
Confidence 678888874 67778888899999996 5544322111 1123334577788999988763
No 99
>KOG0807 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism]
Probab=40.17 E-value=73 Score=29.42 Aligned_cols=76 Identities=22% Similarity=0.310 Sum_probs=47.8
Q ss_pred cHHHHHHHhCCceEEEEeCCCCCCCC-hh-----------HHHHHHHHHHHhcCcEEEEecCCCCCC-CCeeeeeEeEEE
Q 017888 243 QELAMIYGARGAHLICYPGAFNMTTG-PL-----------HWELLQRARATDNQLYVATCSPARDEG-AGYVAWGHSTLV 309 (364)
Q Consensus 243 pe~~r~~~~~Gadlil~ps~~~~~~~-~~-----------~~~~~~~~rA~en~~~vv~~n~~g~~~-~~~~~~G~S~Ii 309 (364)
.|+.++++.+||++++.|-++++-.. +. .+-.-.+..|.++++|+-...--...+ .....+-...++
T Consensus 37 keLi~eA~~k~A~~iflPE~~dFi~~n~~esi~Lae~l~~k~m~~y~elar~~nIwlSlgg~~~r~~~~~~k~~N~hl~i 116 (295)
T KOG0807|consen 37 KELISEAAQKGAKLIFLPEAFDFIGQNPLESIELAEPLDGKFMEQYRELARSHNIWLSLGGHHERSDDGNQKLRNTHLLI 116 (295)
T ss_pred HHHHHHHHHcCCCEEEcchhhhhhcCCcccceecccccChHHHHHHHHHHHhcCeeEEeccccCCCccccceeeeeEEEE
Confidence 46888899999999999999765311 00 111223566678999987654222111 112344567788
Q ss_pred CCCCCEeEe
Q 017888 310 GPFGEVLAT 318 (364)
Q Consensus 310 ~p~G~il~~ 318 (364)
|..|+++++
T Consensus 117 d~~G~i~a~ 125 (295)
T KOG0807|consen 117 DSKGEIRAE 125 (295)
T ss_pred cCCchHHHH
Confidence 888988765
No 100
>cd01821 Rhamnogalacturan_acetylesterase_like Rhamnogalacturan_acetylesterase_like subgroup of SGNH-hydrolases. Rhamnogalacturan acetylesterase removes acetyl esters from rhamnogalacturonan substrates, and renders them susceptible to degradation by rhamnogalacturonases. Rhamnogalacturonans are highly branched regions in pectic polysaccharides, consisting of repeating -(1,2)-L-Rha-(1,4)-D-GalUA disaccharide units, with many rhamnose residues substituted by neutral oligosaccharides such as arabinans, galactans and arabinogalactans. Extracellular enzymes participating in the degradation of plant cell wall polymers, such as Rhamnogalacturonan acetylesterase, would typically be found in saprophytic and plant pathogenic fungi and bacteria.
Probab=39.43 E-value=1.3e+02 Score=26.03 Aligned_cols=63 Identities=21% Similarity=0.228 Sum_probs=35.2
Q ss_pred CHHHHHHHHHHHHHHHHHCCCcEEEcCCCCCCCCCCCCccchhhhhccCCCCchHHHHHHHHHHHcCcEEE
Q 017888 95 DKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIV 165 (364)
Q Consensus 95 d~~~n~~~i~~~i~~A~~~gadLvVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~~~i~Iv 165 (364)
+.++-.+.+.++++.+.+.++.+|++-=.....+.... ...+. ...+.+.++++|+++++.++
T Consensus 88 ~~~~~~~nl~~ii~~~~~~~~~~il~tp~~~~~~~~~~--~~~~~------~~~~~~~~~~~a~~~~~~~v 150 (198)
T cd01821 88 PYTTYKEYLRRYIAEARAKGATPILVTPVTRRTFDEGG--KVEDT------LGDYPAAMRELAAEEGVPLI 150 (198)
T ss_pred cHHHHHHHHHHHHHHHHHCCCeEEEECCccccccCCCC--ccccc------chhHHHHHHHHHHHhCCCEE
Confidence 44555555666666667778888875211111111110 01111 13477889999999998775
No 101
>cd07990 LPLAT_LCLAT1-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: LCLAT1-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are such LPLATs as Lysocardiolipin acyltransferase 1 (LCLAT1) or 1-acyl-sn-glycerol-3-phosphate acyltransferase and similar proteins.
Probab=39.32 E-value=1.5e+02 Score=25.84 Aligned_cols=49 Identities=14% Similarity=0.116 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHC--CCcEEEcCCCCCCCCCCCCccchhhhhccCCCCchHHHHHHHHHHHcCcEEEE
Q 017888 99 NIAHARRAIEEAAEK--GAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVG 166 (364)
Q Consensus 99 n~~~i~~~i~~A~~~--gadLvVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~~~i~Iv~ 166 (364)
..+.+.+.++...+. +..+++|||..-.. + ...+...++|++.++.++-
T Consensus 87 d~~~i~~~~~~l~~~~~~~~lviFPEGTr~~----------~---------~~~~~~~~~a~k~~~p~l~ 137 (193)
T cd07990 87 DEKTIKRQLKRLKDSPEPFWLLIFPEGTRFT----------E---------EKKERSQEFAEKNGLPPLK 137 (193)
T ss_pred hHHHHHHHHHHHhcCCCCcEEEEeCcccCCC----------H---------HHHHHHHHHHHHcCCCCcc
Confidence 344555666555554 78899999996421 1 1334455788888876654
No 102
>cd07986 LPLAT_ACT14924-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: Unknown ACT14924. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are uncharacterized phospholipid/glycerol acyltransferases such as the Pectobacterium carotovorum subsp. carotovorum PC1 locus ACT14924 putative acyltransferase, and similar proteins.
Probab=39.21 E-value=70 Score=28.39 Aligned_cols=59 Identities=24% Similarity=0.281 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHCCCcEEEcCCCCCCCCCCCCccchhhhhccCCCCchHHHHHHHHHHHcCcEEEE
Q 017888 98 RNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVG 166 (364)
Q Consensus 98 ~n~~~i~~~i~~A~~~gadLvVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~~~i~Iv~ 166 (364)
.+.+.+. .+.++.++|-.++||||...+-.... +.+.. ..++-.-...+|.+.++.|+.
T Consensus 83 ~~~~~~~-~~~~~L~~G~~l~IFPEGtrs~~~~~-~g~~~--------~~~fk~G~~~lA~~~~~pIvP 141 (210)
T cd07986 83 KNRESLR-EALRHLKNGGALIIFPAGRVSTASPP-FGRVS--------DRPWNPFVARLARKAKAPVVP 141 (210)
T ss_pred hhHHHHH-HHHHHHhCCCEEEEECCccccccccc-CCccc--------cCCccHHHHHHHHHHCCCEEE
Confidence 4444343 44455677889999999976533210 00000 012334567788888988874
No 103
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=39.21 E-value=59 Score=28.05 Aligned_cols=66 Identities=21% Similarity=0.197 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHCCCcEEEcCCCCCCCCCCCCccchhhhhccCCCCchHHHHHHHHHHHcCcEEEEe
Q 017888 96 KERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGG 167 (364)
Q Consensus 96 ~~~n~~~i~~~i~~A~~~gadLvVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~~~i~Iv~G 167 (364)
.++.++.+.+.++.|+..|++.++++=...............+.+ .+.++.+.+.|+++|+.+.+=
T Consensus 66 r~~~~~~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~~~~~~~------~~~l~~l~~~a~~~gv~i~lE 131 (213)
T PF01261_consen 66 REEALEYLKKAIDLAKRLGAKYIVVHSGRYPSGPEDDTEENWERL------AENLRELAEIAEEYGVRIALE 131 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHTBSEEEEECTTESSSTTSSHHHHHHHH------HHHHHHHHHHHHHHTSEEEEE
T ss_pred hHHHHHHHHHHHHHHHHhCCCceeecCcccccccCCCHHHHHHHH------HHHHHHHHhhhhhhcceEEEe
Confidence 345588899999999999999999883310001111111111111 247778888888999887754
No 104
>TIGR00546 lnt apolipoprotein N-acyltransferase. This enzyme transfers the acyl group to lipoproteins in the lgt/lsp/lnt system which is found broadly in bacteria but not in archaea. This model represents one component of the "lipoprotein lgt/lsp/lnt system" genome property.
Probab=35.68 E-value=1.1e+02 Score=30.07 Aligned_cols=66 Identities=18% Similarity=0.237 Sum_probs=37.3
Q ss_pred CceEEEEeCCCCCC---CChhHHHHHHHHHHHhcCcEEEEecCCCCCCCCeeeeeEeEEECCCCCEeEe
Q 017888 253 GAHLICYPGAFNMT---TGPLHWELLQRARATDNQLYVATCSPARDEGAGYVAWGHSTLVGPFGEVLAT 318 (364)
Q Consensus 253 Gadlil~ps~~~~~---~~~~~~~~~~~~rA~en~~~vv~~n~~g~~~~~~~~~G~S~Ii~p~G~il~~ 318 (364)
|+|+|+.|-..-.. ..........+..|.+++++++........+....++-...+++|+|+++..
T Consensus 197 ~~dlVv~PE~a~~~~~~~~~~~~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~yNsa~~~~~~G~~~~~ 265 (391)
T TIGR00546 197 KPDLVVWPETAFPFDLENSPQKLADRLKLLVLSKGIPILIGAPDAVPGGPYHYYNSAYLVDPGGEVVQR 265 (391)
T ss_pred CCCEEEcCccccccchhhCcHHHHHHHHHHHHhCCCEEEEecccccCCCCCceeeEEEEECCCCCcccc
Confidence 79999998763221 1111122334566778899888654322111111345566788999987653
No 105
>PF09587 PGA_cap: Bacterial capsule synthesis protein PGA_cap; InterPro: IPR019079 CapA is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein [].
Probab=34.76 E-value=1.9e+02 Score=26.36 Aligned_cols=55 Identities=20% Similarity=0.348 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHCCCcEEEcCCCCCCCCCCCCccchhhhhccCCCCchHHHHHHHHHHHcCcEEEEeeee
Q 017888 101 AHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIP 170 (364)
Q Consensus 101 ~~i~~~i~~A~~~gadLvVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~~~i~Iv~Gs~~ 170 (364)
+.+.+.+++++ +++|+||.==-| |..+... +.+..+.+.+.+-+.|+.+|+|..+
T Consensus 171 ~~i~~~i~~~r-~~~D~vIv~~Hw--G~e~~~~------------p~~~q~~~a~~lidaGaDiIiG~Hp 225 (250)
T PF09587_consen 171 ERIKEDIREAR-KKADVVIVSLHW--GIEYENY------------PTPEQRELARALIDAGADIIIGHHP 225 (250)
T ss_pred HHHHHHHHHHh-cCCCEEEEEecc--CCCCCCC------------CCHHHHHHHHHHHHcCCCEEEeCCC
Confidence 77888898887 789987653333 3222111 1245566666666689999998544
No 106
>PF08821 CGGC: CGGC domain; InterPro: IPR014925 Proteins in this entry are a quite highly conserved sequence of CGGC in its central region. The region has many conserved cysteines and histidines suggestive of a zinc binding function.
Probab=34.33 E-value=1.4e+02 Score=23.80 Aligned_cols=55 Identities=20% Similarity=0.297 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHCCCcEEEcCCCCCCCCCCCCccchhhhhccCCCCchHHHHHHHHHH-HcCcEEEEee
Q 017888 100 IAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVAR-LLKITIVGGS 168 (364)
Q Consensus 100 ~~~i~~~i~~A~~~gadLvVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~-~~~i~Iv~Gs 168 (364)
-+++...+++..+.|+|.|.|.=....+..... -|..+.+.+.-+ ++|+.||.|+
T Consensus 51 g~~~~~~~~~l~~~~~d~IHlssC~~~~~~~~~--------------CP~~~~~~~~I~~~~gi~VV~GT 106 (107)
T PF08821_consen 51 GRKLVRRIKKLKKNGADVIHLSSCMVKGNPHGP--------------CPHIDEIKKIIEEKFGIEVVEGT 106 (107)
T ss_pred hhHHHHHHHHHHHCCCCEEEEcCCEecCCCCCC--------------CCCHHHHHHHHHHHhCCCEeeec
Confidence 344555666667999999999877655432110 123444544444 4499999884
No 107
>smart00870 Asparaginase Asparaginase, which is found in various plant, animal and bacterial cells, catalyses the deamination of asparagine to yield aspartic acid and an ammonium ion, resulting in a depletion of free circulatory asparagine in plasma PUBMED:3026924. The enzyme is effective in the treatment of human malignant lymphomas, which have a diminished capacity to produce asparagine synthetase: in order to survive, such cells absorb asparagine from blood plasma PUBMED:2407723, PUBMED:3379033 - if Asn levels have been depleted by injection of asparaginase, the lymphoma cells die.
Probab=34.20 E-value=1.9e+02 Score=27.69 Aligned_cols=63 Identities=17% Similarity=0.017 Sum_probs=45.1
Q ss_pred eeEEEEEeccCcccHHHHHHHhCCceEEEEeCCCCCCCChhHHHHHHHHHHHhcCcEEEEecCCC
Q 017888 230 GRIGIGICYDIRFQELAMIYGARGAHLICYPGAFNMTTGPLHWELLQRARATDNQLYVATCSPAR 294 (364)
Q Consensus 230 ~rigv~IC~D~~fpe~~r~~~~~Gadlil~ps~~~~~~~~~~~~~~~~~rA~en~~~vv~~n~~g 294 (364)
-|+.++-+|-...+++.+.+...|++-|+.-+.-.-. -+..|.. .-.++.+.+++||.++.+.
T Consensus 212 ~~V~il~~~pG~~~~~l~~~~~~~~~GlVl~~~G~Gn-~p~~~~~-~l~~a~~~gipVV~~sq~~ 274 (323)
T smart00870 212 PKVAIVKAYPGMDAELLDALLDSGAKGLVLEGTGAGN-VPPDLLE-ALKEALERGIPVVRTSRCL 274 (323)
T ss_pred CcEEEEEeCCCCCHHHHHHHHhCCCCEEEEEeeCCCC-CCHHHHH-HHHHHHHCCCEEEEeccCC
Confidence 4899999999889999988888888887765532111 1223332 3457788999999998764
No 108
>PRK09461 ansA cytoplasmic asparaginase I; Provisional
Probab=33.84 E-value=2e+02 Score=27.75 Aligned_cols=66 Identities=11% Similarity=-0.028 Sum_probs=45.5
Q ss_pred eeEEEEEeccCcccHHHHHHHhCCceEEEEeCCCCCCCChhHHHHHHHHHHHhcCcEEEEecCCCC
Q 017888 230 GRIGIGICYDIRFQELAMIYGARGAHLICYPGAFNMTTGPLHWELLQRARATDNQLYVATCSPARD 295 (364)
Q Consensus 230 ~rigv~IC~D~~fpe~~r~~~~~Gadlil~ps~~~~~~~~~~~~~~~~~rA~en~~~vv~~n~~g~ 295 (364)
.++.++-||=...+++.+.+...|++-|+.-+.-.-......+..-...++.+.|++||.++.+..
T Consensus 210 ~~V~ii~~~pG~~~~~l~~~~~~~~~GiVl~~~G~Gn~p~~~~~~~~l~~~~~~Gi~VV~~Sr~~~ 275 (335)
T PRK09461 210 QPIGVVTIYPGISAEVVRNFLRQPVKALILRSYGVGNAPQNPALLQELKEASERGIVVVNLTQCMS 275 (335)
T ss_pred CcEEEEEecCCCCHHHHHHHHhCCCCEEEEccCCCCCCCCCHHHHHHHHHHHHCCCEEEEeCCCCC
Confidence 479999999888899999888889887776553211111112222335678899999999987753
No 109
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=33.00 E-value=2.4e+02 Score=22.35 Aligned_cols=91 Identities=11% Similarity=0.087 Sum_probs=47.7
Q ss_pred EEEEEecc-cc-cCHHHHHHHHHHHHHHHHHCCCcEEEcCCCCCCCCCCCCccchhhhhccCCCCchHHHHHHHHHHHcC
Q 017888 84 KVGLCQLS-VT-ADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLK 161 (364)
Q Consensus 84 kIA~vQ~~-v~-~d~~~n~~~i~~~i~~A~~~gadLvVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~~~ 161 (364)
|+.++.+- .+ ......+..+.++.++..++++.+|...- ..+.. ....+.+++.+++++
T Consensus 24 k~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~---~~~~~----------------~~~~~~~~~~~~~~~ 84 (126)
T cd03012 24 KVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHS---PEFAF----------------ERDLANVKSAVLRYG 84 (126)
T ss_pred CEEEEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEecc---Ccccc----------------ccCHHHHHHHHHHcC
Confidence 45555553 22 45566677777777766666777665421 00000 012345666777776
Q ss_pred cEEEEeeeeee-----cCCeeEEEEEEEcCCCcEEEE
Q 017888 162 ITIVGGSIPER-----SGDRLYNTCCVFGSDGKLIAK 193 (364)
Q Consensus 162 i~Iv~Gs~~~~-----~~~~~yNsa~vi~~~G~i~~~ 193 (364)
+..-...-+.. -+-.-.-+.++|+++|+++.+
T Consensus 85 ~~~p~~~D~~~~~~~~~~v~~~P~~~vid~~G~v~~~ 121 (126)
T cd03012 85 ITYPVANDNDYATWRAYGNQYWPALYLIDPTGNVRHV 121 (126)
T ss_pred CCCCEEECCchHHHHHhCCCcCCeEEEECCCCcEEEE
Confidence 64322111110 011234578999999998654
No 110
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=32.45 E-value=1.3e+02 Score=28.31 Aligned_cols=73 Identities=22% Similarity=0.228 Sum_probs=46.7
Q ss_pred HHHHHHCCCcEEEcCCCCCCCCCCCCccchhhhhccCCCCchHHHHHHHHHHHcCcEEEEeeeeeecCCeeEEEEEEEcC
Q 017888 107 IEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGS 186 (364)
Q Consensus 107 i~~A~~~gadLvVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~~~i~Iv~Gs~~~~~~~~~yNsa~vi~~ 186 (364)
+..|...+++|+++=|-.. |. ..... ....+.+++++++.+..|++.+....+-..+....+++.
T Consensus 147 ia~aL~~~P~lliLDEPt~-GL-----Dp~~~--------~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~- 211 (293)
T COG1131 147 IALALLHDPELLILDEPTS-GL-----DPESR--------REIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILN- 211 (293)
T ss_pred HHHHHhcCCCEEEECCCCc-CC-----CHHHH--------HHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEe-
Confidence 4455667889999988753 22 11111 247788999999887777776544333334566677774
Q ss_pred CCcEEEEe
Q 017888 187 DGKLIAKH 194 (364)
Q Consensus 187 ~G~i~~~y 194 (364)
+|+++..-
T Consensus 212 ~G~~~~~g 219 (293)
T COG1131 212 DGKIIAEG 219 (293)
T ss_pred CCEEEEeC
Confidence 89887554
No 111
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=32.24 E-value=1.5e+02 Score=20.68 Aligned_cols=45 Identities=20% Similarity=0.175 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHCCCcEEEcCCCCCCCCCCCCccchhhhhccCCCCchHHHHHHHHHHHcCcEEEEe
Q 017888 102 HARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGG 167 (364)
Q Consensus 102 ~i~~~i~~A~~~gadLvVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~~~i~Iv~G 167 (364)
...++++.|+++|.+.+.+=+..... ....+.++++++++.++.|
T Consensus 16 ~~~~~~~~a~~~g~~~v~iTDh~~~~---------------------~~~~~~~~~~~~gi~~i~G 60 (67)
T smart00481 16 SPEELVKRAKELGLKAIAITDHGNLF---------------------GAVEFYKAAKKAGIKPIIG 60 (67)
T ss_pred CHHHHHHHHHHcCCCEEEEeeCCccc---------------------CHHHHHHHHHHcCCeEEEE
Confidence 36678889999999999988885211 1123556677889999998
No 112
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=31.99 E-value=1.4e+02 Score=24.02 Aligned_cols=41 Identities=22% Similarity=0.304 Sum_probs=23.6
Q ss_pred HHHHHHHcCcEEEEeeeeeecCCeeE---EEEEEEcCCCcEEEEee
Q 017888 153 LSEVARLLKITIVGGSIPERSGDRLY---NTCCVFGSDGKLIAKHR 195 (364)
Q Consensus 153 l~~lA~~~~i~Iv~Gs~~~~~~~~~y---Nsa~vi~~~G~i~~~y~ 195 (364)
...+++.+++...-.. ...++..+ .+.++|+++|+++..|+
T Consensus 98 ~~~~~~~~g~~~~~~~--~~~~~~~~~~~~~~~lid~~G~i~~~~~ 141 (142)
T cd02968 98 IEALAKAFGVYYEKVP--EDDGDYLVDHSAAIYLVDPDGKLVRYYG 141 (142)
T ss_pred HHHHHHHhcEEEEecC--CCCCceeEeccceEEEECCCCCEEEeec
Confidence 4566677776544320 00011112 26899999999987775
No 113
>cd07988 LPLAT_ABO13168-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: Unknown ABO13168. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are uncharacterized phospholipid/glycerol acyltransferases such as the Acinetobacter baumannii ATCC 17978 locus ABO13168 putative acyltransferase, and similar proteins.
Probab=31.68 E-value=1.1e+02 Score=26.01 Aligned_cols=35 Identities=20% Similarity=0.063 Sum_probs=24.1
Q ss_pred CCcEEEcCCCCCCCCCCCCccchhhhhccCCCCchHHHHHHHHHHHcCcEEEE
Q 017888 114 GAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVG 166 (364)
Q Consensus 114 gadLvVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~~~i~Iv~ 166 (364)
+-.++||||..-+.- +++-.-...+|.+.++.|+.
T Consensus 95 ~~~l~IFPEGtR~~~------------------~~fk~G~~~lA~~~~~PIvP 129 (163)
T cd07988 95 EFVLAIAPEGTRSKV------------------DKWKTGFYHIARGAGVPILL 129 (163)
T ss_pred CcEEEEeCCCCCCCC------------------cChhhHHHHHHHHcCCCEEE
Confidence 457999999976531 12334467788888988874
No 114
>cd07993 LPLAT_DHAPAT-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: GPAT-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are such LPLATs as dihydroxyacetone phosphate acyltransferase (DHAPAT, also known as 1 glycerol-3-phosphate O-acyltransferase 1) and similar proteins.
Probab=31.08 E-value=1.7e+02 Score=25.80 Aligned_cols=27 Identities=22% Similarity=0.158 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHCCCcEEEcCCCCCCC
Q 017888 101 AHARRAIEEAAEKGAKLILLPEIWNSP 127 (364)
Q Consensus 101 ~~i~~~i~~A~~~gadLvVfPE~~l~g 127 (364)
..+.+.+.++.++|-.++||||..-+.
T Consensus 88 ~~~~~~~~~~l~~g~~l~iFPEGtrs~ 114 (205)
T cd07993 88 AVLQEYVQELLKNGQPLEFFIEGTRSR 114 (205)
T ss_pred HHHHHHHHHHHhCCceEEEEcCCCCCC
Confidence 445566777788899999999997653
No 115
>PF07355 GRDB: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); InterPro: IPR022787 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon. ; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=30.70 E-value=1.5e+02 Score=28.89 Aligned_cols=62 Identities=18% Similarity=0.103 Sum_probs=39.2
Q ss_pred CeeEEEEEeccCcccH----H----HHHHHhCCceEEEEeCCCCCCCChhHHHHHHHHHHHhcCcEEEEe
Q 017888 229 VGRIGIGICYDIRFQE----L----AMIYGARGAHLICYPGAFNMTTGPLHWELLQRARATDNQLYVATC 290 (364)
Q Consensus 229 ~~rigv~IC~D~~fpe----~----~r~~~~~Gadlil~ps~~~~~~~~~~~~~~~~~rA~en~~~vv~~ 290 (364)
+--++.+||-|..|-| . ...+.+..+|++|.--+|+...=...--.++.+..-+.+++++.+
T Consensus 48 ~eIv~TiiCGDnyf~en~eea~~~i~~mv~~~~pD~viaGPaFnagrYG~acg~v~~aV~e~~~IP~vta 117 (349)
T PF07355_consen 48 AEIVATIICGDNYFNENKEEALKKILEMVKKLKPDVVIAGPAFNAGRYGVACGEVAKAVQEKLGIPVVTA 117 (349)
T ss_pred CEEEEEEEECcchhhhCHHHHHHHHHHHHHhcCCCEEEEcCCcCCchHHHHHHHHHHHHHHhhCCCEEEE
Confidence 4468999999998853 2 223445789999976666653111122334555556788888765
No 116
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=30.12 E-value=2.4e+02 Score=23.17 Aligned_cols=38 Identities=13% Similarity=0.117 Sum_probs=23.7
Q ss_pred EEEEEeccc---ccCHHHHHHHHHHHHHHHHHCCCcEEEcC
Q 017888 84 KVGLCQLSV---TADKERNIAHARRAIEEAAEKGAKLILLP 121 (364)
Q Consensus 84 kIA~vQ~~v---~~d~~~n~~~i~~~i~~A~~~gadLvVfP 121 (364)
|+.++.+-. ...+......+.+..++..+.|+.+|-+.
T Consensus 31 k~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is 71 (154)
T PRK09437 31 QRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGIS 71 (154)
T ss_pred CCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEc
Confidence 344555432 13455556667777777777888887774
No 117
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=29.97 E-value=1.9e+02 Score=27.57 Aligned_cols=72 Identities=17% Similarity=0.141 Sum_probs=46.9
Q ss_pred HHHHHHCCCcEEEcCCCCCCCCCCCCccchhhhhccCCCCchHHHHHHHHHHHcCcEEEEeeeeeecCCeeEEEEEEEcC
Q 017888 107 IEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGS 186 (364)
Q Consensus 107 i~~A~~~gadLvVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~~~i~Iv~Gs~~~~~~~~~yNsa~vi~~ 186 (364)
+..|.-..++++.+=|-.+. +.-.+. ....+.+++...+++++|+..+..-.+=..+.+..+.|+
T Consensus 167 LaaaLLh~p~VLfLDEpTvg------LDV~aq--------~~ir~Flke~n~~~~aTVllTTH~~~di~~lc~rv~~I~- 231 (325)
T COG4586 167 LAAALLHPPKVLFLDEPTVG------LDVNAQ--------ANIREFLKEYNEERQATVLLTTHIFDDIATLCDRVLLID- 231 (325)
T ss_pred HHHHhcCCCcEEEecCCccC------cchhHH--------HHHHHHHHHHHHhhCceEEEEecchhhHHHhhhheEEee-
Confidence 33344457788888887642 111111 136677888888999999887654333356888999997
Q ss_pred CCcEEEE
Q 017888 187 DGKLIAK 193 (364)
Q Consensus 187 ~G~i~~~ 193 (364)
.|+++..
T Consensus 232 ~Gqlv~d 238 (325)
T COG4586 232 QGQLVFD 238 (325)
T ss_pred CCcEeec
Confidence 8988753
No 118
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=29.27 E-value=1.8e+02 Score=26.52 Aligned_cols=61 Identities=15% Similarity=0.012 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHCCCcEEEcCCCCCCCCCCCCc--cchhhhhccCCCCchHHHHHHHHHHHcCcEEEE
Q 017888 96 KERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSF--PVYAEDIDAGGDASPSTAMLSEVARLLKITIVG 166 (364)
Q Consensus 96 ~~~n~~~i~~~i~~A~~~gadLvVfPE~~l~gy~~~~~--~~~~~~~~~~~~~~~~~~~l~~lA~~~~i~Iv~ 166 (364)
.+...+.+.+.++.|...|+..|+.+= |...... .+..+.. ...+..+.+.|+++|+.+..
T Consensus 80 ~~~~~~~~~~~i~~a~~lga~~i~~~~----g~~~~~~~~~~~~~~~------~~~l~~l~~~a~~~Gv~l~l 142 (258)
T PRK09997 80 EEEFRDGVAAAIRYARALGNKKINCLV----GKTPAGFSSEQIHATL------VENLRYAANMLMKEDILLLI 142 (258)
T ss_pred HHHHHHHHHHHHHHHHHhCCCEEEECC----CCCCCCCCHHHHHHHH------HHHHHHHHHHHHHcCCEEEE
Confidence 455667788999999999999887642 2211111 1111111 13567777788888987765
No 119
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=28.74 E-value=2.8e+02 Score=24.47 Aligned_cols=73 Identities=15% Similarity=0.178 Sum_probs=39.4
Q ss_pred HHHHHHCCCcEEEcCCCCCCCCCCCCccchhhhhccCCCCchHHHHHHHHHHHcCcEEEEeeeeeecCCeeEEEEEEEcC
Q 017888 107 IEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGS 186 (364)
Q Consensus 107 i~~A~~~gadLvVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~~~i~Iv~Gs~~~~~~~~~yNsa~vi~~ 186 (364)
+..|...+++++++=|-... . ..... ....+.+.++.++.+..|++-+.....-..+.+..+++..
T Consensus 142 la~al~~~p~lllLDEPt~~-L-----D~~~~--------~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~ 207 (220)
T cd03293 142 LARALAVDPDVLLLDEPFSA-L-----DALTR--------EQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSA 207 (220)
T ss_pred HHHHHHcCCCEEEECCCCCC-C-----CHHHH--------HHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEEC
Confidence 34455668888888886432 1 11111 1355667777666565555443322211244566777754
Q ss_pred -CCcEEEE
Q 017888 187 -DGKLIAK 193 (364)
Q Consensus 187 -~G~i~~~ 193 (364)
+|+++..
T Consensus 208 ~~G~i~~~ 215 (220)
T cd03293 208 RPGRIVAE 215 (220)
T ss_pred CCCEEEEE
Confidence 6887654
No 120
>PTZ00261 acyltransferase; Provisional
Probab=27.89 E-value=1.8e+02 Score=28.47 Aligned_cols=52 Identities=13% Similarity=0.081 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHCCCcEEEcCCCCCCCCCCCCccchhhhhccCCCCchHHHHHHHHHHHcCcEEE
Q 017888 100 IAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIV 165 (364)
Q Consensus 100 ~~~i~~~i~~A~~~gadLvVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~~~i~Iv 165 (364)
.+.+.+.+++..++|-.|+||||..-+--. ..+. ++-.-...+|.+.++.|+
T Consensus 201 ~~~v~~~~~e~Lk~G~sLvIFPEGTRS~~g-g~L~-------------pFK~GaF~LAieagvPIV 252 (355)
T PTZ00261 201 QAQVQQAIDAHLRLGGSLAFFPEGAINKHP-QVLQ-------------TFRYGTFATIIKHRMEVY 252 (355)
T ss_pred HHHHHHHHHHHHHCCCEEEEECCcCCcCCC-CcCC-------------CCcHHHHHHHHHcCCCEE
Confidence 334555566677889999999999754211 0011 223335667888888874
No 121
>PF09142 TruB_C: tRNA Pseudouridine synthase II, C terminal; InterPro: IPR015225 Pseudouridine synthases catalyse the isomerisation of uridine to pseudouridine (Psi) in a variety of RNA molecules, and may function as RNA chaperones. Pseudouridine is the most abundant modified nucleotide found in all cellular RNAs. There are four distinct families of pseudouridine synthases that share no global sequence similarity, but which do share the same fold of their catalytic domain(s) and uracil-binding site and are descended from a common molecular ancestor. The catalytic domain consists of two subdomains, each of which has an alpha+beta structure that has some similarity to the ferredoxin-like fold (note: some pseudouridine synthases contain additional domains). The active site is the most conserved structural region of the superfamily and is located between the two homologous domains. These families are []: Pseudouridine synthase I, TruA. Pseudouridine synthase II, TruB, which contains and additional C-terminal PUA domain. Pseudouridine synthase RsuA (ribosomal small subunit) and RluC/RluD (ribosomal large subunits), both of which contain an additional N-terminal alpha-L RNA-binding motif. Pseudouridine synthase TruD, which has a natural circular permutation in the catalytic domain, as well as an insertion of a family-specific alpha+beta subdomain. TruB is responsible for the pseudouridine residue present in the T loops of virtually all tRNAs. TruB recognises the preformed 3-D structure of the T loop primarily through shape complementarity. It accesses its substrate uridyl residue by flipping out the nucleotide and disrupts the tertiary structure of tRNA []. The C-terminal domain adopts a secondary structure consisting of a four-stranded beta sheet and one alpha helix, similar to that found in PUA domains. It is predominantly involved in RNA-binding, being mostly found in tRNA pseudouridine synthase B (TruB) []. ; GO: 0003723 RNA binding, 0009982 pseudouridine synthase activity, 0001522 pseudouridine synthesis, 0009451 RNA modification; PDB: 1SGV_B.
Probab=27.86 E-value=66 Score=22.39 Aligned_cols=35 Identities=23% Similarity=0.300 Sum_probs=19.1
Q ss_pred HHHHHHhcCcEEEEecCCCCCCCCeeeeeEeEEECCCCCEeEeCC
Q 017888 276 QRARATDNQLYVATCSPARDEGAGYVAWGHSTLVGPFGEVLATTE 320 (364)
Q Consensus 276 ~~~rA~en~~~vv~~n~~g~~~~~~~~~G~S~Ii~p~G~il~~~~ 320 (364)
..++++.+|..+-.... .|...+++|+|++++-..
T Consensus 9 ~ea~~l~~Gr~l~~~~~----------~g~~aa~~pdG~lvAL~~ 43 (56)
T PF09142_consen 9 EEARDLRHGRRLPAAGP----------PGPVAAFAPDGRLVALLE 43 (56)
T ss_dssp HHHHHHHTT---B---------------S-EEEE-TTS-EEEEEE
T ss_pred HHHHHHhCCCccCCCCC----------CceEEEECCCCcEEEEEE
Confidence 45777888888766532 267899999999998763
No 122
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=27.65 E-value=1.7e+02 Score=27.20 Aligned_cols=76 Identities=21% Similarity=0.253 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHCCCcEEEcCCCCCCCCCCCCccchhhhhccCCCCchHHHHHHHHHHHcCcEEEEeeeeeecC-CeeEE
Q 017888 101 AHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERSG-DRLYN 179 (364)
Q Consensus 101 ~~i~~~i~~A~~~gadLvVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~~~i~Iv~Gs~~~~~~-~~~yN 179 (364)
++-+-+|..|..++++++++=|-... -|+ ..- -+.++.+++++++.++.||.- ...-.- -++-.
T Consensus 143 erQrv~iArALaQ~~~iLLLDEPTs~----LDi---~~Q-------~evl~ll~~l~~~~~~tvv~v-lHDlN~A~ryad 207 (258)
T COG1120 143 ERQRVLIARALAQETPILLLDEPTSH----LDI---AHQ-------IEVLELLRDLNREKGLTVVMV-LHDLNLAARYAD 207 (258)
T ss_pred HHHHHHHHHHHhcCCCEEEeCCCccc----cCH---HHH-------HHHHHHHHHHHHhcCCEEEEE-ecCHHHHHHhCC
Confidence 34455788899999999999997532 111 111 247888999999999988775 333211 23334
Q ss_pred EEEEEcCCCcEEE
Q 017888 180 TCCVFGSDGKLIA 192 (364)
Q Consensus 180 sa~vi~~~G~i~~ 192 (364)
..+++ .+|+++.
T Consensus 208 ~~i~l-k~G~i~a 219 (258)
T COG1120 208 HLILL-KDGKIVA 219 (258)
T ss_pred EEEEE-ECCeEEe
Confidence 44555 5787754
No 123
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=27.34 E-value=1.3e+02 Score=25.82 Aligned_cols=46 Identities=15% Similarity=0.158 Sum_probs=27.2
Q ss_pred HHHHHHHHHHcCcEEEEeeeeeecCCeeE---EEEEEEcCCCcEEEEee
Q 017888 150 TAMLSEVARLLKITIVGGSIPERSGDRLY---NTCCVFGSDGKLIAKHR 195 (364)
Q Consensus 150 ~~~l~~lA~~~~i~Iv~Gs~~~~~~~~~y---Nsa~vi~~~G~i~~~y~ 195 (364)
.+.+.++++.+++...-.......++..+ +..++++|+|++...|.
T Consensus 124 ~~~i~~l~~~~~v~~~~~~~~~~~~~~~i~Hs~~~~Lidp~G~i~~~y~ 172 (174)
T PF02630_consen 124 REEIEELAKQFGVYYEKVPEDKPEGDYQIDHSAFIYLIDPDGRIRAIYN 172 (174)
T ss_dssp HHHHHHHHHHCTHCEEEEESSSTTSCEEEEESSEEEEE-TTSEEEEEEC
T ss_pred HHHHHHHHHHHHhhhcccccccCCCCceEecccEEEEEcCCCcEEEEEc
Confidence 35678888888876543311111122222 46789999999987774
No 124
>cd06551 LPLAT Lysophospholipid acyltransferases (LPLATs) of glycerophospholipid biosynthesis. Lysophospholipid acyltransferase (LPLAT) superfamily members are acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis. These proteins catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this superfamily are LPLATs such as glycerol-3-phosphate 1-acyltransferase (GPAT, PlsB), 1-acyl-sn-glycerol-3-phosphate acyltransferase (AGPAT, PlsC), lysophosphatidylcholine acyltransferase 1 (LPCAT-1), lysophosphatidylethanolamine acyltransferase (LPEAT, also known as, MBOAT2, membrane-bound O-acyltransferase domain-containing protein 2), lipid A biosynthesis lauroyl/myristoyl acyltransferase, 2-acylglycerol O-acyltransferase (MGAT), dihydroxyacetone phosphate acyltransferase (DHAPAT, also known as 1 glycerol-3-p
Probab=27.24 E-value=3.6e+02 Score=22.68 Aligned_cols=49 Identities=14% Similarity=0.129 Sum_probs=30.8
Q ss_pred HHHHHHHHC-CCcEEEcCCCCCCCCCCCCccchhhhhccCCCCchHHHHHHHHHHHcCcEEEEe
Q 017888 105 RAIEEAAEK-GAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGG 167 (364)
Q Consensus 105 ~~i~~A~~~-gadLvVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~~~i~Iv~G 167 (364)
+.+.++.++ |..+++|||....... . . ..+...-...+|++.++.|+.-
T Consensus 91 ~~~~~~l~~~g~~v~ifPeG~~~~~~-~----~---------~~~~~~g~~~la~~~~~~IvPv 140 (187)
T cd06551 91 KYVARLLSKPGSVVWIFPEGTRTRRD-K----R---------PLQFKPGVAHLAEKAGVPIVPV 140 (187)
T ss_pred HHHHHHHhcCCcEEEEeCCcccCCCC-C----C---------cccccchHHHHHHHcCCcEEEE
Confidence 334445566 8999999999754221 0 0 0123344677888888888765
No 125
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=26.78 E-value=2.5e+02 Score=24.10 Aligned_cols=67 Identities=10% Similarity=0.028 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHCCCcEEEcCCCCCCCCCCCCccchhhhhccCCCCchHHHHHHHHHHHcCcEEEEee
Q 017888 100 IAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGS 168 (364)
Q Consensus 100 ~~~i~~~i~~A~~~gadLvVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~~~i~Iv~Gs 168 (364)
.++-.+.++..++.|.|-||+--....+.......-..... .....+.++.+.++|.++|+-|.+|.
T Consensus 19 ~~~W~~~~~~m~~~GidtlIlq~~~~~~~~~yps~~~~~~~--~~~~~d~l~~~L~~A~~~Gmkv~~Gl 85 (166)
T PF14488_consen 19 PAQWREEFRAMKAIGIDTLILQWTGYGGFAFYPSKLSPGGF--YMPPVDLLEMILDAADKYGMKVFVGL 85 (166)
T ss_pred HHHHHHHHHHHHHcCCcEEEEEEeecCCcccCCccccCccc--cCCcccHHHHHHHHHHHcCCEEEEeC
Confidence 44455667777889999999987665553321110001110 01234688999999999999999994
No 126
>cd07574 nitrilase_Rim1_like Uncharacterized subgroup of the nitrilase superfamily; some members of this subgroup have an N-terminal RimI domain (class 12 nitrilases). Some members of this subgroup are implicated in post-translational modification, as they contain an N-terminal GCN5-related N-acetyltransferase (GNAT) protein RimI family domain. The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 12. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=26.74 E-value=2.3e+02 Score=26.08 Aligned_cols=64 Identities=20% Similarity=0.157 Sum_probs=34.1
Q ss_pred HHHHHCCCcEEEcCCCCCCCCCCCCccchhhhhccCCCCchHHHHHHHHHHHcCcEEEEeeeeeec-----CCeeEEEEE
Q 017888 108 EEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERS-----GDRLYNTCC 182 (364)
Q Consensus 108 ~~A~~~gadLvVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~~~i~Iv~Gs~~~~~-----~~~~yNsa~ 182 (364)
+....+|+|+|+.|-.+.... ... .....++.-|-+++++++..+..-.. +...+-.+.
T Consensus 163 r~l~~~ga~ii~~ps~~~~~~------~~~----------~~~~~~~arA~en~~~vv~an~~G~~~~~~~~~~~~G~S~ 226 (280)
T cd07574 163 RALAEAGADLLLVPSCTDTRA------GYW----------RVRIGAQARALENQCYVVQSGTVGNAPWSPAVDVNYGQAA 226 (280)
T ss_pred HHHHHcCCCEEEECCcCCccc------cHH----------HHHHHHHHHHHhhCceEEEeCCCCCCCCccccccccccce
Confidence 445678999999985432111 000 12223455677889998764321111 123344456
Q ss_pred EEcCC
Q 017888 183 VFGSD 187 (364)
Q Consensus 183 vi~~~ 187 (364)
+++|.
T Consensus 227 i~~P~ 231 (280)
T cd07574 227 VYTPC 231 (280)
T ss_pred eecCC
Confidence 67775
No 127
>PRK10528 multifunctional acyl-CoA thioesterase I and protease I and lysophospholipase L1; Provisional
Probab=26.58 E-value=1.9e+02 Score=24.98 Aligned_cols=69 Identities=16% Similarity=0.183 Sum_probs=38.2
Q ss_pred EEEEEecccc-----cCHHHHHHHHHHHHHHHHHCCCcEEEcCCCCCCCCCCCCccchhhhhccCCCCchHHHHHHHHHH
Q 017888 84 KVGLCQLSVT-----ADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVAR 158 (364)
Q Consensus 84 kIA~vQ~~v~-----~d~~~n~~~i~~~i~~A~~~gadLvVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~ 158 (364)
.+.++++... .+.++..+.+.+.++++.+.+++++++.-. ++.. ......+ ...+.++++|+
T Consensus 73 d~Vii~~GtND~~~~~~~~~~~~~l~~li~~~~~~~~~~ill~~~-~P~~---~~~~~~~---------~~~~~~~~~a~ 139 (191)
T PRK10528 73 RWVLVELGGNDGLRGFPPQQTEQTLRQIIQDVKAANAQPLLMQIR-LPAN---YGRRYNE---------AFSAIYPKLAK 139 (191)
T ss_pred CEEEEEeccCcCccCCCHHHHHHHHHHHHHHHHHcCCCEEEEEee-cCCc---ccHHHHH---------HHHHHHHHHHH
Confidence 4566665432 245555666667777777778888776311 1111 0001111 24456788999
Q ss_pred HcCcEEE
Q 017888 159 LLKITIV 165 (364)
Q Consensus 159 ~~~i~Iv 165 (364)
++++..+
T Consensus 140 ~~~v~~i 146 (191)
T PRK10528 140 EFDIPLL 146 (191)
T ss_pred HhCCCcc
Confidence 9987654
No 128
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=26.39 E-value=2.6e+02 Score=22.28 Aligned_cols=16 Identities=25% Similarity=0.536 Sum_probs=12.8
Q ss_pred EEEEEcCCCcEEEEee
Q 017888 180 TCCVFGSDGKLIAKHR 195 (364)
Q Consensus 180 sa~vi~~~G~i~~~y~ 195 (364)
+.++++++|+++..|.
T Consensus 112 ~~~lid~~G~v~~~~~ 127 (140)
T cd03017 112 STFLIDPDGKIVKVWR 127 (140)
T ss_pred eEEEECCCCEEEEEEe
Confidence 6799999999876653
No 129
>PF13342 Toprim_Crpt: C-terminal repeat of topoisomerase
Probab=26.13 E-value=1.4e+02 Score=21.20 Aligned_cols=40 Identities=15% Similarity=0.243 Sum_probs=30.4
Q ss_pred HHHHHHHHHHcCcEEEEeeeeeecCCeeEEEEEEEcCCCcEE
Q 017888 150 TAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLI 191 (364)
Q Consensus 150 ~~~l~~lA~~~~i~Iv~Gs~~~~~~~~~yNsa~vi~~~G~i~ 191 (364)
.+.+.+|..+..+.++-| +- ...|+.|++.++++.++++.
T Consensus 18 ~~~~~~Ll~~gkT~~ikG-F~-SK~Gk~F~A~L~l~~~~~v~ 57 (62)
T PF13342_consen 18 DEEVKELLEKGKTGLIKG-FK-SKKGKPFDAYLVLDDDKKVK 57 (62)
T ss_pred HHHHHHHHHcCCccCccC-cc-cCCCCEEeEEEEEcCCCeEE
Confidence 356777888888888888 43 35788999999998777653
No 130
>cd01828 sialate_O-acetylesterase_like2 sialate_O-acetylesterase_like subfamily of the SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=25.66 E-value=3.9e+02 Score=22.13 Aligned_cols=72 Identities=15% Similarity=0.194 Sum_probs=38.8
Q ss_pred EEEEEecccc-----cCHHHHHHHHHHHHHHHHH--CCCcEEEcCCCCCCCCCCCCccchhhhhccCCCCchHHHHHHHH
Q 017888 84 KVGLCQLSVT-----ADKERNIAHARRAIEEAAE--KGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEV 156 (364)
Q Consensus 84 kIA~vQ~~v~-----~d~~~n~~~i~~~i~~A~~--~gadLvVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~l 156 (364)
.+.+++.... .+.+.-.+.+.++++.+.+ .++.+++..=.-..+. .....+.+ ..+.+.++++
T Consensus 50 d~vvl~~G~ND~~~~~~~~~~~~~l~~li~~~~~~~~~~~vi~~~~~p~~~~----~~~~~~~~------~~~n~~l~~~ 119 (169)
T cd01828 50 KAIFIMIGINDLAQGTSDEDIVANYRTILEKLRKHFPNIKIVVQSILPVGEL----KSIPNEQI------EELNRQLAQL 119 (169)
T ss_pred CEEEEEeeccCCCCCCCHHHHHHHHHHHHHHHHHHCCCCeEEEEecCCcCcc----CcCCHHHH------HHHHHHHHHH
Confidence 4555555421 2445555556666666655 7889888632211111 01111111 1366778889
Q ss_pred HHHcCcEEE
Q 017888 157 ARLLKITIV 165 (364)
Q Consensus 157 A~~~~i~Iv 165 (364)
|++.++.++
T Consensus 120 a~~~~~~~i 128 (169)
T cd01828 120 AQQEGVTFL 128 (169)
T ss_pred HHHCCCEEE
Confidence 998888766
No 131
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=25.63 E-value=1.6e+02 Score=27.50 Aligned_cols=30 Identities=17% Similarity=0.029 Sum_probs=24.3
Q ss_pred EEEeccCcccHHHHHHHhCCceEEEEeCCC
Q 017888 234 IGICYDIRFQELAMIYGARGAHLICYPGAF 263 (364)
Q Consensus 234 v~IC~D~~fpe~~r~~~~~Gadlil~ps~~ 263 (364)
+.+.+-+..+|-++.+...|||.+++-|+.
T Consensus 205 i~vGFGI~~~e~~~~~~~~GADGvVVGSal 234 (263)
T CHL00200 205 IILGFGISTSEQIKQIKGWNINGIVIGSAC 234 (263)
T ss_pred EEEECCcCCHHHHHHHHhcCCCEEEECHHH
Confidence 344666778999999999999999988764
No 132
>PF02126 PTE: Phosphotriesterase family; InterPro: IPR001559 Synonym(s): Paraoxonase, A-esterase, Aryltriphosphatase, Phosphotriesterase, Paraoxon hydrolase Bacteria such as Brevundimonas diminuta (Pseudomonas diminuta) harbour a plasmid that carries the gene for Aryldialkylphosphatase (3.1.8.1 from EC) (PTE) (also known as parathion hydrolase). This enzyme has attracted interest because of its potential use in the detoxification of chemical waste and warfare agents and its ability to degrade agricultural pesticides such as parathion. It acts specifically on synthetic organophosphate triesters and phosphorofluoridates. It does not seem to have a natural occuring substrate and may thus have optimally evolved for utilizing paraoxon. Aryldialkylphosphatase belongs to a family [, ] of enzymes that possess a binuclear zinc metal centre at their active site. The two zinc ions are coordinated by six different residues, six of which being histidines. This family so far includes, in addition to the parathion hydrolase, the following proteins: Escherichia coli protein Php, the substrate of which is not yet known. Mycobacterium tuberculosis phosphotriesterase homology protein Rv0230C. Mammalian phosphotriesterase related protein (PTER) (RPR-1). ; GO: 0008270 zinc ion binding, 0016788 hydrolase activity, acting on ester bonds, 0009056 catabolic process; PDB: 3MSR_A 3OVG_D 3K2G_C 1BF6_B 3OQE_A 3C86_A 3SO7_A 2D2G_A 2R1P_A 2D2H_A ....
Probab=25.47 E-value=1.6e+02 Score=28.08 Aligned_cols=53 Identities=15% Similarity=0.298 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHCCCcEEEcCCCCCCCCCCCCccchhhhhccCCCCchHHHHHHHHHHHcCcEEEEee
Q 017888 96 KERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGS 168 (364)
Q Consensus 96 ~~~n~~~i~~~i~~A~~~gadLvVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~~~i~Iv~Gs 168 (364)
.+...+.+.+.++..++.|...|| |....|+. .-.+.+++++++.|+.||.++
T Consensus 33 ~~~~~~~~~~El~~~k~~Gg~tiV--d~T~~g~G------------------Rd~~~l~~is~~tGv~II~~T 85 (308)
T PF02126_consen 33 RDEDVEAAVAELKEFKAAGGRTIV--DATPIGLG------------------RDVEALREISRRTGVNIIAST 85 (308)
T ss_dssp HHHHHHHHHHHHHHHHHTTEEEEE--E--SGGGT------------------B-HHHHHHHHHHHT-EEEEEE
T ss_pred hhhhHHHHHHHHHHHHHcCCCEEE--ecCCcccC------------------cCHHHHHHHHHHhCCeEEEeC
Confidence 445778888888888999999999 77665542 234668999999999999874
No 133
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=25.42 E-value=2.6e+02 Score=24.53 Aligned_cols=70 Identities=19% Similarity=0.226 Sum_probs=38.0
Q ss_pred HHHHHHCCCcEEEcCCCCCCCCCCCCccchhhhhccCCCCchHHHHHHHHHHHcCcEEEEeeeeeecCCeeEEEEEEEcC
Q 017888 107 IEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGS 186 (364)
Q Consensus 107 i~~A~~~gadLvVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~~~i~Iv~Gs~~~~~~~~~yNsa~vi~~ 186 (364)
+..|...+++++++=|-+.. . ..... ....+.+.+++++.+..|++-+.....-..+.+..++++
T Consensus 142 la~al~~~p~llllDEPt~~-L-----D~~~~--------~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~- 206 (214)
T cd03297 142 LARALAAQPELLLLDEPFSA-L-----DRALR--------LQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVME- 206 (214)
T ss_pred HHHHHhcCCCEEEEcCCccc-C-----CHHHH--------HHHHHHHHHHHHHcCcEEEEEecCHHHHHHhcCEEEEEE-
Confidence 44455678888888886532 1 11111 135566777777656655554332211123455667775
Q ss_pred CCcEE
Q 017888 187 DGKLI 191 (364)
Q Consensus 187 ~G~i~ 191 (364)
+|+++
T Consensus 207 ~G~i~ 211 (214)
T cd03297 207 DGRLQ 211 (214)
T ss_pred CCEEE
Confidence 78764
No 134
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=25.20 E-value=2.8e+02 Score=22.48 Aligned_cols=28 Identities=14% Similarity=0.233 Sum_probs=19.8
Q ss_pred cCHHHHHHHHHHHHHHHHHCCCcEEEcC
Q 017888 94 ADKERNIAHARRAIEEAAEKGAKLILLP 121 (364)
Q Consensus 94 ~d~~~n~~~i~~~i~~A~~~gadLvVfP 121 (364)
..+...+..+.+..++..+.++++|.+.
T Consensus 42 ~~C~~~~~~l~~~~~~~~~~~v~vi~vs 69 (149)
T cd03018 42 PVCTKELCALRDSLELFEAAGAEVLGIS 69 (149)
T ss_pred ccHHHHHHHHHHHHHHHHhCCCEEEEec
Confidence 4455667777777777777788887765
No 135
>TIGR00486 YbgI_SA1388 dinuclear metal center protein, YbgI/SA1388 family. The characterization of this family of uncharacterized proteins as orthologous is tentative. Members are found in all three domains of life. Several members (from Bacillus subtilis, Listeria monocytogenes, and Mycobacterium tuberculosis - all classified as Firmicutes within the Eubacteria) share a long insert relative to other members.
Probab=24.47 E-value=2.5e+02 Score=25.81 Aligned_cols=56 Identities=14% Similarity=-0.021 Sum_probs=35.4
Q ss_pred EEEEeccCcccHHHHHHHhCCceEEEE--eCCCCCCCC--hhHHHHHHHHHHHhcCcEEEEe
Q 017888 233 GIGICYDIRFQELAMIYGARGAHLICY--PGAFNMTTG--PLHWELLQRARATDNQLYVATC 290 (364)
Q Consensus 233 gv~IC~D~~fpe~~r~~~~~Gadlil~--ps~~~~~~~--~~~~~~~~~~rA~en~~~vv~~ 290 (364)
++++|-|.. ++..+++.+.|||+||. |--|..... ......- ...++++++.|.++
T Consensus 38 ~I~~alD~t-~~vi~~Ai~~~~dlIitHHP~~f~~~~~~~~~~~~~~-~~~li~~~I~vy~~ 97 (249)
T TIGR00486 38 KVVVAVDAS-ESVADEAVRLGADLIITHHPLIWKPLKRLIRGIKPGR-LKILLQNDISLYSA 97 (249)
T ss_pred EEEEEecCC-HHHHHHHHHCCCCEEEEcCccccCCcccccCCCHHHH-HHHHHHCCCeEEEe
Confidence 578888874 56778888899999996 444432111 0112212 44588899888765
No 136
>PLN02901 1-acyl-sn-glycerol-3-phosphate acyltransferase
Probab=24.25 E-value=2.4e+02 Score=25.04 Aligned_cols=55 Identities=18% Similarity=0.132 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHCCCcEEEcCCCCCCCCCCCCccchhhhhccCCCCchHHHHHHHHHHHcCcEEEEe
Q 017888 97 ERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGG 167 (364)
Q Consensus 97 ~~n~~~i~~~i~~A~~~gadLvVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~~~i~Iv~G 167 (364)
....+.+ +.+.++.++|-.+++|||..-+.. ... .++..-...+|.+.++.|+.-
T Consensus 106 ~~~~~~~-~~~~~~l~~g~~v~IfPEGtr~~~--~~~-------------~~f~~G~~~lA~~~~~pIvPv 160 (214)
T PLN02901 106 RSQLECL-KRCMELLKKGASVFFFPEGTRSKD--GKL-------------AAFKKGAFSVAAKTGVPVVPI 160 (214)
T ss_pred HHHHHHH-HHHHHHHhCCCEEEEeCCCCCCCC--Ccc-------------cCchhhHHHHHHHcCCCEEEE
Confidence 3334433 334455567889999999964311 110 123334556888889887754
No 137
>PRK10799 metal-binding protein; Provisional
Probab=23.85 E-value=2.8e+02 Score=25.46 Aligned_cols=57 Identities=9% Similarity=-0.144 Sum_probs=35.9
Q ss_pred EEEEeccCcccHHHHHHHhCCceEEEE--eCCCCCCCChh-HHHHHHHHHHHhcCcEEEEe
Q 017888 233 GIGICYDIRFQELAMIYGARGAHLICY--PGAFNMTTGPL-HWELLQRARATDNQLYVATC 290 (364)
Q Consensus 233 gv~IC~D~~fpe~~r~~~~~Gadlil~--ps~~~~~~~~~-~~~~~~~~rA~en~~~vv~~ 290 (364)
++++|-|.. ++..+++.+.|||+||. |--|....... ....-....++++++.|+++
T Consensus 37 ~I~~alD~t-~~vi~~A~~~~~dlIitHHP~~~~~~~~~~~~~~~~~~~~li~~~i~vy~~ 96 (247)
T PRK10799 37 KIVTGVTAS-QALLDEAVRLQADAVIVHHGYFWKGESPVIRGMKRNRLKTLLANDINLYGW 96 (247)
T ss_pred EEEEEeCCC-HHHHHHHHHCCCCEEEECCchhccCCCccccchHHHHHHHHHHCCCeEEEE
Confidence 678888874 57778889999999995 43343221110 11222345778888877655
No 138
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=22.95 E-value=2.5e+02 Score=28.15 Aligned_cols=64 Identities=16% Similarity=0.134 Sum_probs=39.4
Q ss_pred CCeeEEEEEeccCcccH--------HHHHHHhCCceEEEEeCCCCCCCChhHHHHHHHHHHHhcCcEEEEec
Q 017888 228 DVGRIGIGICYDIRFQE--------LAMIYGARGAHLICYPGAFNMTTGPLHWELLQRARATDNQLYVATCS 291 (364)
Q Consensus 228 ~~~rigv~IC~D~~fpe--------~~r~~~~~Gadlil~ps~~~~~~~~~~~~~~~~~rA~en~~~vv~~n 291 (364)
++--++.+||-|.+|-| +...+.+..+|+++.--+|+...=...--.++.+..-+.+++++.+=
T Consensus 43 ~~eVvaTiiCGDnYf~en~eea~~~i~~mv~k~~pDv~iaGPaFNagrYG~acg~va~aV~e~~~IP~vtaM 114 (431)
T TIGR01917 43 DAEIVATVVCGDSFFGENLEEAKAKVLEMIKGANPDIFIAGPAFNAGRYGMAAGAITKAVQDELGIKAFTAM 114 (431)
T ss_pred CCEEEEEEEECchhhhhCHHHHHHHHHHHHHhcCCCEEEEcCccCCccHHHHHHHHHHHHHHhhCCCeEEEe
Confidence 34468999999998854 22234567899999766666532111223344444456788887653
No 139
>cd07992 LPLAT_AAK14816-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: Unknown AAK14816-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are uncharacterized glycerol-3-phosphate acyltransferases such as the Plasmodium falciparum locus AAK14816 putative acyltransferase, and similar proteins.
Probab=22.88 E-value=1.1e+02 Score=26.82 Aligned_cols=26 Identities=27% Similarity=0.280 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHCCCcEEEcCCCCCC
Q 017888 101 AHARRAIEEAAEKGAKLILLPEIWNS 126 (364)
Q Consensus 101 ~~i~~~i~~A~~~gadLvVfPE~~l~ 126 (364)
....+.+.++.++|-.++||||...+
T Consensus 97 ~~~~~~~~~~l~~G~~l~IFPEGtr~ 122 (203)
T cd07992 97 AAVFDAVGEALKAGGAIGIFPEGGSH 122 (203)
T ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCC
Confidence 34455666677889999999999754
No 140
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=22.76 E-value=2.5e+02 Score=28.15 Aligned_cols=64 Identities=14% Similarity=0.109 Sum_probs=39.4
Q ss_pred CCeeEEEEEeccCcccH--------HHHHHHhCCceEEEEeCCCCCCCChhHHHHHHHHHHHhcCcEEEEec
Q 017888 228 DVGRIGIGICYDIRFQE--------LAMIYGARGAHLICYPGAFNMTTGPLHWELLQRARATDNQLYVATCS 291 (364)
Q Consensus 228 ~~~rigv~IC~D~~fpe--------~~r~~~~~Gadlil~ps~~~~~~~~~~~~~~~~~rA~en~~~vv~~n 291 (364)
++--++.+||-|.+|-| +...+.+..+|+++.--+|+...=...--.++.+..-+.+++++.+=
T Consensus 43 ~~eVvaTiiCGDnYf~en~eea~~~i~~mv~k~~pDv~iaGPaFNagrYG~acg~va~aV~e~~~IP~vt~M 114 (431)
T TIGR01918 43 DAEVVHTVVCGDSFFGENLEEAVARVLEMLKDKEPDIFIAGPAFNAGRYGVACGEICKVVQDKLNVPAVTSM 114 (431)
T ss_pred CCEEEEEEEECchhhhhCHHHHHHHHHHHHHhcCCCEEEEcCccCCccHHHHHHHHHHHHHHhhCCCeEEEe
Confidence 34468999999998855 22234567899999766666532111223344444456788877653
No 141
>COG1504 Uncharacterized conserved protein [Function unknown]
Probab=22.30 E-value=2.6e+02 Score=22.60 Aligned_cols=83 Identities=18% Similarity=0.267 Sum_probs=46.2
Q ss_pred ecCCeeEEEEEEEcCCCcEEEEeeccccCC-CCCCCcc-cccc-cccccCCCCCeEEecCCeeEEEEEeccCcccHHHHH
Q 017888 172 RSGDRLYNTCCVFGSDGKLIAKHRKIHLFD-IDIPGKI-TFIE-SKSLTAGETPTIVDTDVGRIGIGICYDIRFQELAMI 248 (364)
Q Consensus 172 ~~~~~~yNsa~vi~~~G~i~~~y~K~~L~~-~~~P~~~-~~~E-~~~~~~G~~~~vf~~~~~rigv~IC~D~~fpe~~r~ 248 (364)
+-+|+-|+.-+++.++|++ .+..|..-.. +| -.+. ..+| ...+..|.+ ++-++-|-.|.+-- .++....
T Consensus 13 ~i~Gk~f~~DIvi~~dG~v-~rr~K~lskrK~G-TSHkl~~eEle~~lee~~E--~ivvGTG~~G~l~l----~~ea~e~ 84 (121)
T COG1504 13 TIGGKDFEHDIVIRPDGKV-ERREKELSKRKYG-TSHKLALEELEELLEEGPE--VIVVGTGQSGMLEL----SEEAREF 84 (121)
T ss_pred EECCEeccccEEEecCCce-ehhhhhhhhhhcC-cccccCHHHHHHHHhcCCc--EEEEecCceeEEEe----CHHHHHH
Confidence 4578999999999999987 4545432110 00 0000 0111 123444444 34344444444432 3455556
Q ss_pred HHhCCceEEEEeCC
Q 017888 249 YGARGAHLICYPGA 262 (364)
Q Consensus 249 ~~~~Gadlil~ps~ 262 (364)
+.++|+.++..|+.
T Consensus 85 ~r~k~~~vi~~pT~ 98 (121)
T COG1504 85 FRKKGCEVIELPTP 98 (121)
T ss_pred HHhcCCeEEEeCCH
Confidence 77899999999885
No 142
>PF05221 AdoHcyase: S-adenosyl-L-homocysteine hydrolase; InterPro: IPR000043 Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase, 3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. This enzyme is ubiquitous, highly conserved, and may play a key role in the regulation of the intracellular concentration of adenosylhomocysteine. AdoHcyase requires NAD+ as a cofactor and contains a central glycine-rich region which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity, 0006730 one-carbon metabolic process; PDB: 3N58_B 3H9U_C 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 1K0U_F 1B3R_A 1XWF_D ....
Probab=22.29 E-value=2.5e+02 Score=26.30 Aligned_cols=58 Identities=19% Similarity=0.032 Sum_probs=38.6
Q ss_pred cCCeeEEEEEeccCcccHHHHHHHhCCceEEEEeCCCCCCCChhHHHHHHHHHHHhcCcEEEEe
Q 017888 227 TDVGRIGIGICYDIRFQELAMIYGARGAHLICYPGAFNMTTGPLHWELLQRARATDNQLYVATC 290 (364)
Q Consensus 227 ~~~~rigv~IC~D~~fpe~~r~~~~~Gadlil~ps~~~~~~~~~~~~~~~~~rA~en~~~vv~~ 290 (364)
++|.||+..+=-+.----+.+.+...||++.+..+|-.++ ....+.+.+ +.|+.|.+.
T Consensus 41 l~G~rIa~cLHle~kTA~L~~tL~a~GAeV~~~~sNplST-----QDdvaAAL~-~~Gi~V~A~ 98 (268)
T PF05221_consen 41 LKGARIAGCLHLEAKTAVLAETLKALGAEVRWTGSNPLST-----QDDVAAALA-EEGIPVFAW 98 (268)
T ss_dssp TTTEEEEEES--SHHHHHHHHHHHHTTEEEEEEESSTTT-------HHHHHHHH-HTTEEEEE-
T ss_pred CCCCEEEEEEechHHHHHHHHHHHHcCCeEEEecCCCccc-----chHHHHHhc-cCCceEEEe
Confidence 4577888866666666778888999999999988874433 233444444 568888754
No 143
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=21.78 E-value=3.3e+02 Score=23.95 Aligned_cols=71 Identities=13% Similarity=0.193 Sum_probs=39.2
Q ss_pred HHHHHHCCCcEEEcCCCCCCCCCCCCccchhhhhccCCCCchHHHHHHHHHHHcCcEEEEeeeeeecCCeeEEEEEEEcC
Q 017888 107 IEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGS 186 (364)
Q Consensus 107 i~~A~~~gadLvVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~~~i~Iv~Gs~~~~~~~~~yNsa~vi~~ 186 (364)
+..|...+++++++=|-+.. +..... ....+.+.+++++++..|++-+.....-..+.+..+++.
T Consensus 142 la~al~~~p~llllDEPt~~------LD~~~~--------~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~- 206 (220)
T cd03265 142 IARSLVHRPEVLFLDEPTIG------LDPQTR--------AHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIID- 206 (220)
T ss_pred HHHHHhcCCCEEEEcCCccC------CCHHHH--------HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEe-
Confidence 44556678888888887532 111111 135566777777656655554332211123456667774
Q ss_pred CCcEEE
Q 017888 187 DGKLIA 192 (364)
Q Consensus 187 ~G~i~~ 192 (364)
+|+++.
T Consensus 207 ~G~i~~ 212 (220)
T cd03265 207 HGRIIA 212 (220)
T ss_pred CCEEEE
Confidence 788753
No 144
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=21.77 E-value=2.9e+02 Score=26.80 Aligned_cols=72 Identities=24% Similarity=0.273 Sum_probs=43.4
Q ss_pred HHHHHHHCCCcEEEcCCCCCCCCCCCCccchhhhhccCCCCchHHHHHHHHHHHcCcEEEEeeeeeecCCeeEEEEEEEc
Q 017888 106 AIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFG 185 (364)
Q Consensus 106 ~i~~A~~~gadLvVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~~~i~Iv~Gs~~~~~~~~~yNsa~vi~ 185 (364)
.|..|...+++++++=|-+.. . ..... ....+.++++.++.++.|++-+.....-..+.+..++++
T Consensus 150 ~IARAL~~~P~iLLlDEPts~-L-----D~~t~--------~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~ 215 (343)
T TIGR02314 150 AIARALASNPKVLLCDEATSA-L-----DPATT--------QSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVIS 215 (343)
T ss_pred HHHHHHHhCCCEEEEeCCccc-C-----CHHHH--------HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 345566678899998887532 1 11111 236677888888778777765332111124566777785
Q ss_pred CCCcEEE
Q 017888 186 SDGKLIA 192 (364)
Q Consensus 186 ~~G~i~~ 192 (364)
+|+++.
T Consensus 216 -~G~iv~ 221 (343)
T TIGR02314 216 -NGELIE 221 (343)
T ss_pred -CCEEEE
Confidence 898864
No 145
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=21.75 E-value=1.7e+02 Score=26.11 Aligned_cols=37 Identities=30% Similarity=0.382 Sum_probs=27.9
Q ss_pred HHHHHHHCCCcEEEcCCCCCCCCCCCCccchhhhhccCCCCchHHHHHHHHHHHcCcEEEEee
Q 017888 106 AIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGS 168 (364)
Q Consensus 106 ~i~~A~~~gadLvVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~~~i~Iv~Gs 168 (364)
.+++|.+.||+++|-|=+ ...+.+.|+++++.++.|.
T Consensus 72 ~a~~a~~aGA~FivSP~~--------------------------~~~v~~~~~~~~i~~iPG~ 108 (196)
T PF01081_consen 72 QAEAAIAAGAQFIVSPGF--------------------------DPEVIEYAREYGIPYIPGV 108 (196)
T ss_dssp HHHHHHHHT-SEEEESS----------------------------HHHHHHHHHHTSEEEEEE
T ss_pred HHHHHHHcCCCEEECCCC--------------------------CHHHHHHHHHcCCcccCCc
Confidence 467788889999998843 1347788999999999983
No 146
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=21.62 E-value=3.7e+02 Score=20.47 Aligned_cols=53 Identities=9% Similarity=-0.100 Sum_probs=33.0
Q ss_pred eccCcccHHHHH--HHhCCceEEEEeCCCCCCCChhHHHHHHHHHHHhcCcEEEEecCC
Q 017888 237 CYDIRFQELAMI--YGARGAHLICYPGAFNMTTGPLHWELLQRARATDNQLYVATCSPA 293 (364)
Q Consensus 237 C~D~~fpe~~r~--~~~~Gadlil~ps~~~~~~~~~~~~~~~~~rA~en~~~vv~~n~~ 293 (364)
+.|..+...... -....||+||+++.+-. ......++..|.+++++++++...
T Consensus 30 g~~~~~~~~~~~l~~~i~~aD~VIv~t~~vs----H~~~~~vk~~akk~~ip~~~~~~~ 84 (97)
T PF10087_consen 30 GRDGGDEKKASRLPSKIKKADLVIVFTDYVS----HNAMWKVKKAAKKYGIPIIYSRSR 84 (97)
T ss_pred ecCCCCccchhHHHHhcCCCCEEEEEeCCcC----hHHHHHHHHHHHHcCCcEEEECCC
Confidence 445544444322 22356899999987422 112234678888999999998755
No 147
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=20.89 E-value=46 Score=36.09 Aligned_cols=61 Identities=26% Similarity=0.454 Sum_probs=50.5
Q ss_pred ccCCCccCCcceeeeccCCCCCCCCCCCCCC---ccccCCCCCCCCCCCCCCceEEEEEecccc
Q 017888 33 GKAKPVFQSPPLIRTHSSNPNPNPIMASSSK---PEQARAPPALPLPTPPVAKFKVGLCQLSVT 93 (364)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~kIA~vQ~~v~ 93 (364)
++--|+||+.-.+|.-|.|=||-...-+.++ =...+.||..|.|.+..-.|||=++|.+..
T Consensus 649 ~~WiPI~dt~~~~~~~S~~ywpVgl~~~~l~cIlcKGs~~pp~~PrP~~tel~friP~c~~~~~ 712 (933)
T KOG1274|consen 649 NKWIPILDTNKEIRKKSDHYWPVGLAYQQLRCILCKGSRFPPVFPRPAPTELEFRIPLCQKEKE 712 (933)
T ss_pred CceeEeecchhhhcccccceEEEEEecceEEEEEEcCcccCCcCCCCcceeEEEeccccccccc
Confidence 5667999999999999999999777666666 456688888888888777899999999875
No 148
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=20.87 E-value=2.9e+02 Score=24.66 Aligned_cols=61 Identities=16% Similarity=0.168 Sum_probs=33.5
Q ss_pred HHHHHHHHHH-HHCCCcEEEcCCCCCCCCCCCCccchhhhhccCCCCchHHHHHHHHHHHcCcEEEEee
Q 017888 101 AHARRAIEEA-AEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGS 168 (364)
Q Consensus 101 ~~i~~~i~~A-~~~gadLvVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~~~i~Iv~Gs 168 (364)
+.+...++.+ .+.++++||+==+..--... ......+.+ ..+...|+.+|+++++.+++-+
T Consensus 109 ~~l~~~i~~~~~~~~~~~vvID~l~~l~~~~-~~~~~~~~~------~~~~~~L~~la~~~~~~ii~~~ 170 (242)
T cd00984 109 SDIRSRARRLKKEHGLGLIVIDYLQLMSGSK-KKGNRQQEV------AEISRSLKLLAKELNVPVIALS 170 (242)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCchhcCCCC-CCCCHHHHH------HHHHHHHHHHHHHhCCeEEEec
Confidence 3344444433 34499999986543221110 000011111 2477889999999999988754
No 149
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=20.84 E-value=3.8e+02 Score=23.33 Aligned_cols=70 Identities=11% Similarity=0.204 Sum_probs=38.2
Q ss_pred HHHHHHCCCcEEEcCCCCCCCCCCCCccchhhhhccCCCCchHHHHHHHHHHHcCcEEEEeeeeeecCCeeEEEEEEEcC
Q 017888 107 IEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGS 186 (364)
Q Consensus 107 i~~A~~~gadLvVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~~~i~Iv~Gs~~~~~~~~~yNsa~vi~~ 186 (364)
+..|...+++++++=|-... . ..... ....+.+.+++++.+..|++-+.....-..+.+..+++.
T Consensus 139 ia~al~~~p~llllDEP~~~-L-----D~~~~--------~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~- 203 (211)
T cd03298 139 LARVLVRDKPVLLLDEPFAA-L-----DPALR--------AEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLD- 203 (211)
T ss_pred HHHHHhcCCCEEEEcCCccc-C-----CHHHH--------HHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEE-
Confidence 34455568888888887532 1 11111 135566777776666666554332221124456667775
Q ss_pred CCcEE
Q 017888 187 DGKLI 191 (364)
Q Consensus 187 ~G~i~ 191 (364)
+|+++
T Consensus 204 ~G~i~ 208 (211)
T cd03298 204 NGRIA 208 (211)
T ss_pred CCEEe
Confidence 78764
No 150
>COG2100 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=20.79 E-value=1.9e+02 Score=28.11 Aligned_cols=47 Identities=17% Similarity=0.329 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHCCCcEEEcCCCCCCCCCCCCccchhhhhccCCCCchHHHHHHHHHHHcC
Q 017888 97 ERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLK 161 (364)
Q Consensus 97 ~~n~~~i~~~i~~A~~~gadLvVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~~~ 161 (364)
+.+++++++.++.+++.+.|+++-| .+++|+.. .....+-+.|++.|
T Consensus 238 dYdv~kvle~aE~i~~a~idvlIaP-v~lPG~ND-----------------~E~~~iIe~A~~iG 284 (414)
T COG2100 238 DYDVKKVLEVAEYIANAGIDVLIAP-VWLPGVND-----------------DEMPKIIEWAREIG 284 (414)
T ss_pred ccCHHHHHHHHHHHHhCCCCEEEee-eecCCcCh-----------------HHHHHHHHHHHHhC
Confidence 5668888888888899999999999 56788742 25566777888855
No 151
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=20.78 E-value=3.6e+02 Score=24.05 Aligned_cols=70 Identities=20% Similarity=0.193 Sum_probs=39.4
Q ss_pred HHHHHHCCCcEEEcCCCCCCCCCCCCccchhhhhccCCCCchHHHHHHHHHHHcCcEEEEeeeeeecCCeeEEEEEEEcC
Q 017888 107 IEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGS 186 (364)
Q Consensus 107 i~~A~~~gadLvVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~~~i~Iv~Gs~~~~~~~~~yNsa~vi~~ 186 (364)
+..|...+++++++=|-+.. +..... ....+.+.+++++.+..|++-+.....-..+.+..+++.
T Consensus 155 la~al~~~p~llllDEPt~~------LD~~~~--------~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~- 219 (241)
T cd03256 155 IARALMQQPKLILADEPVAS------LDPASS--------RQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLK- 219 (241)
T ss_pred HHHHHhcCCCEEEEeCcccc------CCHHHH--------HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEE-
Confidence 44556678888888887532 111111 135667777776656665554332221123556777775
Q ss_pred CCcEE
Q 017888 187 DGKLI 191 (364)
Q Consensus 187 ~G~i~ 191 (364)
+|+++
T Consensus 220 ~G~i~ 224 (241)
T cd03256 220 DGRIV 224 (241)
T ss_pred CCEEE
Confidence 78875
No 152
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=20.76 E-value=6.5e+02 Score=25.80 Aligned_cols=58 Identities=9% Similarity=0.080 Sum_probs=36.2
Q ss_pred eeEEEEEeccCcccHHHHHHHhCCceEEEEeCCCCCCCChhHHHHHHHHHHHhcCcEEEE
Q 017888 230 GRIGIGICYDIRFQELAMIYGARGAHLICYPGAFNMTTGPLHWELLQRARATDNQLYVAT 289 (364)
Q Consensus 230 ~rigv~IC~D~~fpe~~r~~~~~Gadlil~ps~~~~~~~~~~~~~~~~~rA~en~~~vv~ 289 (364)
.++|.+++..-...+....+.+.|+|+|.+..+-..+ ...|+.+...+..-..+.|+.
T Consensus 230 L~Vgaavg~~~~~~~~~~~l~~ag~d~i~id~a~G~s--~~~~~~i~~ik~~~~~~~v~a 287 (495)
T PTZ00314 230 LLVGAAISTRPEDIERAAALIEAGVDVLVVDSSQGNS--IYQIDMIKKLKSNYPHVDIIA 287 (495)
T ss_pred EEEEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCc--hHHHHHHHHHHhhCCCceEEE
Confidence 4788888864444677778899999999987653322 234555544444333455544
No 153
>cd01832 SGNH_hydrolase_like_1 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid. Myxobacterial members of this subfamily have been reported to be involved in adventurous gliding motility.
Probab=20.74 E-value=3.9e+02 Score=22.35 Aligned_cols=63 Identities=16% Similarity=0.185 Sum_probs=34.5
Q ss_pred CHHHHHHHHHHHHHHHHHCCCcEEEcCCCCCCCCCCCCcc-chhhhhccCCCCchHHHHHHHHHHHcCcEEE
Q 017888 95 DKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFP-VYAEDIDAGGDASPSTAMLSEVARLLKITIV 165 (364)
Q Consensus 95 d~~~n~~~i~~~i~~A~~~gadLvVfPE~~l~gy~~~~~~-~~~~~~~~~~~~~~~~~~l~~lA~~~~i~Iv 165 (364)
+.++-.+.+.++++++...+++++++.-....+. .... ...+.. ....+.++++|+++++.++
T Consensus 86 ~~~~~~~~~~~~i~~i~~~~~~vil~~~~~~~~~--~~~~~~~~~~~------~~~n~~l~~~a~~~~v~~v 149 (185)
T cd01832 86 DPDTYRADLEEAVRRLRAAGARVVVFTIPDPAVL--EPFRRRVRARL------AAYNAVIRAVAARYGAVHV 149 (185)
T ss_pred CHHHHHHHHHHHHHHHHhCCCEEEEecCCCcccc--chhHHHHHHHH------HHHHHHHHHHHHHcCCEEE
Confidence 4445555666666666677889888743222011 1110 111111 2366778999999887655
No 154
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=20.44 E-value=2.5e+02 Score=26.00 Aligned_cols=30 Identities=17% Similarity=0.053 Sum_probs=23.2
Q ss_pred EEEeccCcccHHHHHHHhCCceEEEEeCCC
Q 017888 234 IGICYDIRFQELAMIYGARGAHLICYPGAF 263 (364)
Q Consensus 234 v~IC~D~~fpe~~r~~~~~Gadlil~ps~~ 263 (364)
+.+..-+..+|-++.+...|||.+++-|+.
T Consensus 201 i~vgfGI~~~e~~~~~~~~GADgvVvGSai 230 (256)
T TIGR00262 201 VLVGFGISKPEQVKQAIDAGADGVIVGSAI 230 (256)
T ss_pred EEEeCCCCCHHHHHHHHHcCCCEEEECHHH
Confidence 344445567899999999999999987763
No 155
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=20.09 E-value=3.2e+02 Score=25.44 Aligned_cols=65 Identities=14% Similarity=0.135 Sum_probs=40.2
Q ss_pred HHHHHHHCCCcEEEcCCCCCCCCCCCCccchhhhhccCCCCchHHHHHHHHHHHcCcEEEEeeeeeecCCeeEEEEEEEc
Q 017888 106 AIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFG 185 (364)
Q Consensus 106 ~i~~A~~~gadLvVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~~~i~Iv~Gs~~~~~~~~~yNsa~vi~ 185 (364)
++.+|..+++||+++=|-+.. . | .-.+ ....+.|.++.++ |+.|+.-+.....-..+++..++++
T Consensus 149 ~lARAL~~~p~lllLDEP~~g-v---D--~~~~--------~~i~~lL~~l~~e-g~tIl~vtHDL~~v~~~~D~vi~Ln 213 (254)
T COG1121 149 LLARALAQNPDLLLLDEPFTG-V---D--VAGQ--------KEIYDLLKELRQE-GKTVLMVTHDLGLVMAYFDRVICLN 213 (254)
T ss_pred HHHHHhccCCCEEEecCCccc-C---C--HHHH--------HHHHHHHHHHHHC-CCEEEEEeCCcHHhHhhCCEEEEEc
Confidence 577888899999999998643 1 1 1111 2467778888888 8877764322111224455555553
Done!