Query 017890
Match_columns 364
No_of_seqs 318 out of 2438
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 04:18:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017890.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017890hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1182 Branched chain alpha-k 100.0 2.8E-86 6E-91 631.1 18.4 283 81-363 37-320 (432)
2 COG1071 AcoA Pyruvate/2-oxoglu 100.0 6.8E-69 1.5E-73 528.3 26.7 257 107-363 2-263 (358)
3 PLN02269 Pyruvate dehydrogenas 100.0 2.5E-60 5.3E-65 472.4 26.3 237 125-364 25-262 (362)
4 CHL00149 odpA pyruvate dehydro 100.0 2.2E-59 4.9E-64 462.7 27.8 242 123-364 13-262 (341)
5 TIGR03182 PDH_E1_alph_y pyruva 100.0 2.6E-59 5.5E-64 457.9 25.5 236 129-364 1-237 (315)
6 PLN02374 pyruvate dehydrogenas 100.0 1E-57 2.2E-62 462.3 28.3 242 123-364 79-328 (433)
7 TIGR03181 PDH_E1_alph_x pyruva 100.0 3.4E-57 7.3E-62 447.3 28.1 249 107-364 1-249 (341)
8 cd02000 TPP_E1_PDC_ADC_BCADC T 100.0 1.8E-56 3.8E-61 433.3 25.3 230 135-364 1-231 (293)
9 PF00676 E1_dh: Dehydrogenase 100.0 1E-55 2.2E-60 429.8 23.5 228 136-364 1-228 (300)
10 KOG0225 Pyruvate dehydrogenase 100.0 8.9E-53 1.9E-57 404.3 19.0 237 124-364 53-290 (394)
11 cd02016 TPP_E1_OGDC_like Thiam 100.0 4.6E-44 1E-48 341.5 18.6 216 145-364 1-249 (265)
12 PRK09404 sucA 2-oxoglutarate d 100.0 2.7E-42 5.9E-47 374.2 25.1 236 126-364 185-451 (924)
13 TIGR00239 2oxo_dh_E1 2-oxoglut 100.0 2.9E-37 6.3E-42 334.1 23.6 237 124-364 183-452 (929)
14 PRK12315 1-deoxy-D-xylulose-5- 100.0 6.2E-33 1.3E-37 291.4 22.0 221 121-363 9-245 (581)
15 COG3959 Transketolase, N-termi 100.0 7.7E-32 1.7E-36 248.7 21.4 218 132-362 7-242 (243)
16 PRK12754 transketolase; Review 100.0 1.4E-27 3E-32 253.7 22.9 170 182-363 58-248 (663)
17 cd02007 TPP_DXS Thiamine pyrop 100.0 1.5E-27 3.2E-32 219.1 17.4 164 180-362 24-191 (195)
18 TIGR00232 tktlase_bact transke 100.0 3.2E-27 6.9E-32 251.2 22.3 171 182-363 54-244 (653)
19 cd02012 TPP_TK Thiamine pyroph 100.0 6.2E-27 1.3E-31 222.6 21.6 162 193-363 66-229 (255)
20 PRK12753 transketolase; Review 99.9 1.6E-26 3.5E-31 246.1 21.2 172 181-362 57-247 (663)
21 PF00456 Transketolase_N: Tran 99.9 5.9E-27 1.3E-31 231.0 16.3 171 181-362 54-244 (332)
22 PTZ00089 transketolase; Provis 99.9 8.9E-26 1.9E-30 240.5 22.2 174 180-363 58-251 (661)
23 PLN02790 transketolase 99.9 1.3E-25 2.8E-30 239.0 21.1 174 180-363 46-240 (654)
24 PRK05444 1-deoxy-D-xylulose-5- 99.9 1E-25 2.2E-30 236.9 19.9 234 107-363 2-244 (580)
25 cd02017 TPP_E1_EcPDC_like Thia 99.9 5.1E-25 1.1E-29 219.6 22.6 171 181-362 60-318 (386)
26 TIGR00204 dxs 1-deoxy-D-xylulo 99.9 5.1E-25 1.1E-29 233.1 20.2 222 121-362 7-275 (617)
27 PRK05899 transketolase; Review 99.9 1.8E-24 3.8E-29 229.3 23.4 173 181-364 61-251 (624)
28 cd02011 TPP_PK Thiamine pyroph 99.9 2.7E-25 5.9E-30 208.1 13.8 166 165-347 2-173 (227)
29 TIGR00759 aceE pyruvate dehydr 99.9 3E-23 6.5E-28 222.6 24.3 223 129-362 71-389 (885)
30 TIGR03186 AKGDH_not_PDH alpha- 99.9 1.2E-22 2.6E-27 219.7 25.1 222 131-362 73-389 (889)
31 PRK12571 1-deoxy-D-xylulose-5- 99.9 5.1E-23 1.1E-27 218.7 21.1 234 107-362 4-284 (641)
32 PLN02234 1-deoxy-D-xylulose-5- 99.9 1.5E-22 3.3E-27 214.0 20.6 224 121-362 73-322 (641)
33 PRK13012 2-oxoacid dehydrogena 99.9 8.6E-22 1.9E-26 213.8 24.4 222 130-362 86-403 (896)
34 COG0021 TktA Transketolase [Ca 99.9 8.1E-22 1.8E-26 204.4 21.3 169 181-361 59-248 (663)
35 PLN02582 1-deoxy-D-xylulose-5- 99.9 1.2E-21 2.5E-26 208.6 21.5 224 121-362 40-321 (677)
36 PRK12270 kgd alpha-ketoglutara 99.9 1.7E-21 3.6E-26 208.8 22.0 256 105-364 464-756 (1228)
37 PRK09405 aceE pyruvate dehydro 99.9 2.6E-21 5.6E-26 209.5 23.7 223 129-362 77-395 (891)
38 KOG0523 Transketolase [Carbohy 99.9 6.4E-21 1.4E-25 195.9 21.5 212 138-362 13-242 (632)
39 PRK05261 putative phosphoketol 99.8 3.1E-19 6.6E-24 191.5 17.6 198 158-362 49-284 (785)
40 cd00568 TPP_enzymes Thiamine p 99.8 2.6E-18 5.6E-23 151.2 11.9 116 233-360 42-168 (168)
41 cd02004 TPP_BZL_OCoD_HPCL Thia 99.8 5.2E-18 1.1E-22 151.7 13.2 114 235-360 46-171 (172)
42 cd02013 TPP_Xsc_like Thiamine 99.8 5.6E-18 1.2E-22 155.3 11.5 118 236-362 52-180 (196)
43 cd02006 TPP_Gcl Thiamine pyrop 99.7 1.1E-17 2.3E-22 153.9 11.4 120 235-362 55-195 (202)
44 cd02002 TPP_BFDC Thiamine pyro 99.7 1E-17 2.2E-22 150.2 10.6 112 237-360 49-178 (178)
45 PRK11864 2-ketoisovalerate fer 99.7 7.8E-17 1.7E-21 157.0 16.3 167 187-360 14-206 (300)
46 PF13292 DXP_synthase_N: 1-deo 99.7 1.8E-17 3.9E-22 157.7 10.6 220 121-360 7-270 (270)
47 cd02014 TPP_POX Thiamine pyrop 99.7 5.5E-17 1.2E-21 146.3 12.3 116 235-362 49-174 (178)
48 KOG0451 Predicted 2-oxoglutara 99.7 8.4E-17 1.8E-21 164.1 14.9 237 125-364 152-428 (913)
49 COG0567 SucA 2-oxoglutarate de 99.7 1.9E-16 4.1E-21 170.0 18.0 238 123-364 168-434 (906)
50 cd02015 TPP_AHAS Thiamine pyro 99.7 1.4E-16 3.1E-21 144.4 12.6 115 236-362 49-175 (186)
51 cd02010 TPP_ALS Thiamine pyrop 99.7 1.7E-16 3.7E-21 143.4 12.3 116 235-362 46-171 (177)
52 COG1154 Dxs Deoxyxylulose-5-ph 99.7 8.2E-16 1.8E-20 159.3 17.5 221 120-361 10-279 (627)
53 cd02003 TPP_IolD Thiamine pyro 99.7 2E-16 4.4E-21 146.0 11.7 116 235-362 46-185 (205)
54 cd02001 TPP_ComE_PpyrDC Thiami 99.7 3E-16 6.4E-21 139.5 11.4 114 236-362 41-156 (157)
55 cd03372 TPP_ComE Thiamine pyro 99.7 5.3E-16 1.1E-20 140.6 11.7 113 236-362 41-156 (179)
56 cd03371 TPP_PpyrDC Thiamine py 99.7 8.8E-16 1.9E-20 140.3 12.9 115 236-362 47-164 (188)
57 cd02005 TPP_PDC_IPDC Thiamine 99.7 8.9E-16 1.9E-20 139.4 12.5 117 235-362 48-175 (183)
58 cd02008 TPP_IOR_alpha Thiamine 99.7 2E-15 4.2E-20 136.3 14.4 117 235-360 49-176 (178)
59 PRK06163 hypothetical protein; 99.7 1.1E-15 2.3E-20 141.5 12.5 115 236-362 56-174 (202)
60 PLN02225 1-deoxy-D-xylulose-5- 99.6 2.6E-15 5.6E-20 160.0 16.9 226 117-361 81-364 (701)
61 PF02775 TPP_enzyme_C: Thiamin 99.6 6.1E-16 1.3E-20 135.7 9.6 114 235-358 26-153 (153)
62 TIGR03846 sulfopy_beta sulfopy 99.6 1.4E-15 3.1E-20 138.3 12.0 113 236-362 41-157 (181)
63 PRK07524 hypothetical protein; 99.6 1.2E-15 2.6E-20 158.9 12.5 116 236-363 406-531 (535)
64 cd02009 TPP_SHCHC_synthase Thi 99.6 8.8E-16 1.9E-20 138.3 9.3 111 237-360 51-174 (175)
65 PRK08327 acetolactate synthase 99.6 2.9E-15 6.2E-20 157.5 12.7 120 236-361 429-567 (569)
66 TIGR01504 glyox_carbo_lig glyo 99.6 2.2E-15 4.9E-20 159.0 11.3 119 236-362 417-556 (588)
67 PRK07092 benzoylformate decarb 99.6 4.2E-15 9.1E-20 154.7 12.8 114 235-360 405-529 (530)
68 PRK12474 hypothetical protein; 99.6 3.9E-15 8.5E-20 154.7 12.4 113 236-360 388-518 (518)
69 cd03375 TPP_OGFOR Thiamine pyr 99.6 8.5E-15 1.9E-19 134.2 12.7 114 237-360 51-183 (193)
70 COG0028 IlvB Thiamine pyrophos 99.6 4.1E-15 8.8E-20 156.0 12.0 116 235-362 406-532 (550)
71 PRK06154 hypothetical protein; 99.6 7.3E-15 1.6E-19 154.4 13.6 118 236-362 430-556 (565)
72 PRK06725 acetolactate synthase 99.6 6.3E-15 1.4E-19 155.0 12.5 115 236-362 421-546 (570)
73 PRK06546 pyruvate dehydrogenas 99.6 9.2E-15 2E-19 154.0 13.7 115 236-362 407-531 (578)
74 PRK05858 hypothetical protein; 99.6 7.7E-15 1.7E-19 153.3 12.4 115 236-362 406-531 (542)
75 KOG0450 2-oxoglutarate dehydro 99.6 2.3E-14 4.9E-19 149.3 15.4 236 124-364 243-510 (1017)
76 PRK09107 acetolactate synthase 99.6 7.2E-15 1.6E-19 155.3 11.7 115 236-362 429-555 (595)
77 PRK09124 pyruvate dehydrogenas 99.6 1.5E-14 3.1E-19 152.1 13.9 116 235-362 406-531 (574)
78 PRK11269 glyoxylate carboligas 99.6 7E-15 1.5E-19 155.1 11.5 120 235-362 417-557 (591)
79 PRK08266 hypothetical protein; 99.6 9.5E-15 2.1E-19 152.3 12.1 115 236-362 401-526 (542)
80 TIGR02418 acolac_catab acetola 99.6 1.2E-14 2.6E-19 151.6 12.6 115 236-362 407-531 (539)
81 cd03376 TPP_PFOR_porB_like Thi 99.6 1.2E-14 2.6E-19 137.3 11.2 118 233-360 58-199 (235)
82 PRK07586 hypothetical protein; 99.6 1.1E-14 2.3E-19 151.0 11.7 113 236-360 384-514 (514)
83 PRK07064 hypothetical protein; 99.6 1.7E-14 3.6E-19 150.4 12.4 115 235-361 403-528 (544)
84 TIGR03297 Ppyr-DeCO2ase phosph 99.6 9.2E-14 2E-18 139.0 16.9 161 167-362 174-337 (361)
85 TIGR02720 pyruv_oxi_spxB pyruv 99.6 2.1E-14 4.6E-19 151.1 13.0 116 236-361 407-532 (575)
86 PRK07418 acetolactate synthase 99.6 1.5E-14 3.2E-19 153.4 11.7 116 235-362 432-560 (616)
87 PRK06965 acetolactate synthase 99.6 1.9E-14 4E-19 151.9 11.7 116 236-362 436-563 (587)
88 PRK06457 pyruvate dehydrogenas 99.6 3.1E-14 6.8E-19 148.9 13.1 116 235-362 394-520 (549)
89 PRK08199 thiamine pyrophosphat 99.5 3.8E-14 8.2E-19 148.5 13.5 116 235-362 413-539 (557)
90 CHL00099 ilvB acetohydroxyacid 99.5 2.5E-14 5.4E-19 150.8 12.1 115 235-361 428-555 (585)
91 PRK07710 acetolactate synthase 99.5 4.2E-14 9.1E-19 148.6 13.6 115 236-362 423-549 (571)
92 PRK07979 acetolactate synthase 99.5 4.4E-14 9.6E-19 148.5 13.7 118 236-362 420-549 (574)
93 TIGR03457 sulphoacet_xsc sulfo 99.5 3.5E-14 7.6E-19 149.4 12.9 118 236-362 429-558 (579)
94 PRK08322 acetolactate synthase 99.5 4.5E-14 9.7E-19 147.3 13.4 115 236-362 405-529 (547)
95 PRK06456 acetolactate synthase 99.5 4E-14 8.6E-19 148.6 12.9 115 236-362 420-546 (572)
96 PLN02573 pyruvate decarboxylas 99.5 2.7E-14 6E-19 150.5 11.4 116 236-361 427-552 (578)
97 PRK06112 acetolactate synthase 99.5 5.1E-14 1.1E-18 148.1 13.4 115 236-362 436-561 (578)
98 TIGR03393 indolpyr_decarb indo 99.5 2.3E-14 5.1E-19 149.5 10.6 114 236-361 403-527 (539)
99 PRK08611 pyruvate oxidase; Pro 99.5 4.3E-14 9.4E-19 148.8 12.6 115 236-362 407-531 (576)
100 PRK06882 acetolactate synthase 99.5 6.1E-14 1.3E-18 147.3 13.5 117 235-362 419-547 (574)
101 PRK08617 acetolactate synthase 99.5 3.3E-14 7.2E-19 148.6 11.5 115 236-362 413-537 (552)
102 PLN02470 acetolactate synthase 99.5 5.4E-14 1.2E-18 148.3 12.9 115 236-362 425-558 (585)
103 PRK06048 acetolactate synthase 99.5 6.6E-14 1.4E-18 146.9 13.4 115 236-362 413-539 (561)
104 PRK08979 acetolactate synthase 99.5 7.1E-14 1.5E-18 147.0 13.6 116 236-362 420-547 (572)
105 PRK08155 acetolactate synthase 99.5 7.8E-14 1.7E-18 146.3 13.9 115 236-362 418-544 (564)
106 PRK08527 acetolactate synthase 99.5 9E-14 1.9E-18 145.9 14.3 115 236-362 413-539 (563)
107 TIGR03254 oxalate_oxc oxalyl-C 99.5 9.9E-14 2.1E-18 145.2 14.2 114 236-362 416-539 (554)
108 PRK06466 acetolactate synthase 99.5 8.9E-14 1.9E-18 146.2 13.9 116 236-362 422-549 (574)
109 PRK08273 thiamine pyrophosphat 99.5 9.9E-14 2.1E-18 146.7 13.9 116 236-362 414-547 (597)
110 PRK07525 sulfoacetaldehyde ace 99.5 4.6E-14 1E-18 148.8 11.3 118 235-361 433-562 (588)
111 TIGR00118 acolac_lg acetolacta 99.5 7.5E-14 1.6E-18 146.2 12.4 114 236-361 411-536 (558)
112 PRK08978 acetolactate synthase 99.5 9.1E-14 2E-18 145.2 12.8 115 236-362 400-526 (548)
113 cd02018 TPP_PFOR Thiamine pyro 99.5 7E-14 1.5E-18 132.3 9.9 119 235-360 62-202 (237)
114 PRK09259 putative oxalyl-CoA d 99.5 1.8E-13 3.9E-18 143.8 13.7 113 236-361 423-546 (569)
115 TIGR03394 indol_phenyl_DC indo 99.5 1.2E-13 2.5E-18 144.5 11.2 115 236-362 402-522 (535)
116 PRK09628 oorB 2-oxoglutarate-a 99.5 1.7E-13 3.6E-18 132.6 11.1 112 237-360 68-200 (277)
117 PRK07789 acetolactate synthase 99.5 1.5E-13 3.3E-18 145.6 10.8 116 236-362 446-577 (612)
118 PRK06276 acetolactate synthase 99.5 5.4E-13 1.2E-17 140.7 13.4 114 236-361 418-543 (586)
119 PRK07282 acetolactate synthase 99.4 3.9E-13 8.5E-18 141.3 11.8 114 236-362 417-542 (566)
120 PRK07449 2-succinyl-5-enolpyru 99.4 1.6E-13 3.5E-18 143.9 8.8 114 236-362 424-550 (568)
121 PRK05778 2-oxoglutarate ferred 99.4 8.2E-13 1.8E-17 129.2 12.5 114 237-360 70-202 (301)
122 PRK11869 2-oxoacid ferredoxin 99.4 1E-12 2.2E-17 127.3 11.9 166 155-360 3-192 (280)
123 PRK11867 2-oxoglutarate ferred 99.4 2.5E-12 5.5E-17 125.0 12.3 114 237-360 69-201 (286)
124 PRK11866 2-oxoacid ferredoxin 99.3 7.9E-12 1.7E-16 121.1 12.5 115 236-360 58-191 (279)
125 TIGR02177 PorB_KorB 2-oxoacid: 99.3 7.2E-12 1.6E-16 121.8 11.8 113 237-360 53-185 (287)
126 COG3961 Pyruvate decarboxylase 99.3 1.5E-11 3.3E-16 125.9 12.5 166 165-363 363-537 (557)
127 TIGR03336 IOR_alpha indolepyru 99.3 2.2E-11 4.7E-16 129.1 13.8 117 235-360 401-529 (595)
128 COG2609 AceE Pyruvate dehydrog 99.2 1.7E-09 3.6E-14 113.9 21.9 225 130-362 75-392 (887)
129 PLN02980 2-oxoglutarate decarb 99.2 3.9E-11 8.4E-16 139.7 9.8 116 234-362 756-890 (1655)
130 KOG1185 Thiamine pyrophosphate 99.1 5E-10 1.1E-14 113.9 12.3 117 235-362 428-561 (571)
131 PF09364 XFP_N: XFP N-terminal 99.1 2.2E-10 4.9E-15 113.4 8.2 170 158-344 47-248 (379)
132 COG3962 Acetolactate synthase 99.0 6.7E-09 1.4E-13 105.5 15.2 164 165-363 395-577 (617)
133 PRK11865 pyruvate ferredoxin o 99.0 1.4E-08 3.1E-13 99.3 14.8 125 230-360 62-210 (299)
134 KOG4166 Thiamine pyrophosphate 98.9 4.6E-09 9.9E-14 105.7 8.8 113 237-361 524-647 (675)
135 COG3960 Glyoxylate carboligase 98.8 7.9E-09 1.7E-13 101.6 7.5 154 201-363 375-558 (592)
136 KOG1184 Thiamine pyrophosphate 98.7 4.4E-08 9.6E-13 100.6 9.5 121 232-362 410-540 (561)
137 COG3957 Phosphoketolase [Carbo 98.3 3.4E-06 7.3E-11 89.6 10.2 171 158-340 60-257 (793)
138 COG1013 PorB Pyruvate:ferredox 98.1 3.6E-05 7.8E-10 75.5 12.8 115 236-360 69-203 (294)
139 COG1165 MenD 2-succinyl-6-hydr 97.8 0.00074 1.6E-08 70.8 17.0 107 243-362 428-547 (566)
140 COG4231 Indolepyruvate ferredo 97.7 0.00012 2.6E-09 77.5 9.3 116 233-359 424-552 (640)
141 cd03377 TPP_PFOR_PNO Thiamine 97.3 0.0023 4.9E-08 64.5 11.3 96 259-360 151-266 (365)
142 cd06586 TPP_enzyme_PYR Pyrimid 96.9 0.019 4E-07 49.5 12.2 104 243-358 48-152 (154)
143 cd07035 TPP_PYR_POX_like Pyrim 96.8 0.022 4.8E-07 49.6 11.8 106 243-358 47-153 (155)
144 cd07039 TPP_PYR_POX Pyrimidine 96.7 0.035 7.6E-07 49.6 12.2 105 245-359 53-157 (164)
145 PRK13030 2-oxoacid ferredoxin 96.4 0.018 3.8E-07 65.9 10.4 115 235-358 466-600 (1159)
146 PRK09193 indolepyruvate ferred 96.3 0.021 4.5E-07 65.3 10.5 115 235-358 479-614 (1165)
147 cd07034 TPP_PYR_PFOR_IOR-alpha 96.3 0.044 9.5E-07 48.0 10.2 105 243-358 54-158 (160)
148 cd07038 TPP_PYR_PDC_IPDC_like 96.2 0.077 1.7E-06 47.3 11.4 106 244-358 49-160 (162)
149 PF02776 TPP_enzyme_N: Thiamin 96.1 0.042 9.2E-07 49.1 9.3 108 243-359 52-160 (172)
150 TIGR03845 sulfopyru_alph sulfo 95.9 0.2 4.3E-06 44.7 12.5 106 240-358 44-152 (157)
151 TIGR02176 pyruv_ox_red pyruvat 95.7 0.059 1.3E-06 62.1 10.7 95 260-360 952-1066(1165)
152 PRK13029 2-oxoacid ferredoxin 95.4 0.06 1.3E-06 61.7 9.3 114 236-358 494-628 (1186)
153 cd07037 TPP_PYR_MenD Pyrimidin 94.6 0.25 5.4E-06 44.3 9.2 105 245-359 50-161 (162)
154 PRK08611 pyruvate oxidase; Pro 94.2 0.5 1.1E-05 50.3 11.9 105 245-359 58-162 (576)
155 TIGR03254 oxalate_oxc oxalyl-C 94.1 0.47 1E-05 50.1 11.5 107 245-359 55-162 (554)
156 PRK07525 sulfoacetaldehyde ace 93.9 0.62 1.3E-05 49.7 11.9 105 245-359 58-162 (588)
157 COG0028 IlvB Thiamine pyrophos 93.8 0.55 1.2E-05 50.1 11.3 104 245-358 54-158 (550)
158 PRK07119 2-ketoisovalerate fer 93.7 0.52 1.1E-05 47.4 10.4 108 241-360 59-171 (352)
159 PRK07524 hypothetical protein; 93.4 0.97 2.1E-05 47.5 12.3 108 244-359 53-162 (535)
160 PRK09259 putative oxalyl-CoA d 93.4 0.84 1.8E-05 48.5 11.8 107 245-359 62-169 (569)
161 PRK07064 hypothetical protein; 93.3 0.91 2E-05 47.7 11.9 107 245-359 56-164 (544)
162 TIGR03457 sulphoacet_xsc sulfo 93.2 0.85 1.8E-05 48.5 11.6 105 245-359 54-158 (579)
163 PRK08659 2-oxoglutarate ferred 93.2 0.74 1.6E-05 46.8 10.5 110 241-360 59-171 (376)
164 PRK06456 acetolactate synthase 93.1 0.89 1.9E-05 48.2 11.4 105 245-359 58-163 (572)
165 PRK06276 acetolactate synthase 93.1 0.95 2.1E-05 48.3 11.7 106 244-359 52-158 (586)
166 PRK06457 pyruvate dehydrogenas 93.1 1.1 2.3E-05 47.5 11.9 105 245-359 54-158 (549)
167 PRK07979 acetolactate synthase 93.0 0.86 1.9E-05 48.4 11.2 105 245-359 57-162 (574)
168 PRK07418 acetolactate synthase 93.0 1.1 2.3E-05 48.2 12.0 105 245-359 75-180 (616)
169 cd07033 TPP_PYR_DXS_TK_like Py 92.9 0.85 1.8E-05 40.2 9.3 100 243-358 52-154 (156)
170 PRK08266 hypothetical protein; 92.8 1.2 2.6E-05 46.8 11.8 107 245-359 58-166 (542)
171 PRK06112 acetolactate synthase 92.6 1.1 2.4E-05 47.6 11.4 105 245-359 64-169 (578)
172 TIGR03297 Ppyr-DeCO2ase phosph 92.6 0.57 1.2E-05 47.4 8.8 115 237-358 33-150 (361)
173 PLN02470 acetolactate synthase 92.6 1 2.2E-05 48.0 11.1 105 245-359 66-171 (585)
174 TIGR01504 glyox_carbo_lig glyo 92.6 1.6 3.4E-05 46.7 12.5 94 259-359 68-162 (588)
175 PRK08273 thiamine pyrophosphat 92.6 0.96 2.1E-05 48.4 10.9 105 245-359 57-162 (597)
176 TIGR00118 acolac_lg acetolacta 92.5 1.2 2.5E-05 47.2 11.3 105 245-359 54-159 (558)
177 PRK06466 acetolactate synthase 92.5 1.1 2.5E-05 47.5 11.3 105 245-359 57-162 (574)
178 PRK08322 acetolactate synthase 92.5 1.3 2.8E-05 46.6 11.6 105 245-359 53-158 (547)
179 PRK07586 hypothetical protein; 92.5 1 2.2E-05 47.0 10.8 105 245-359 54-159 (514)
180 PRK06725 acetolactate synthase 92.4 1.1 2.4E-05 47.7 11.1 105 245-359 67-172 (570)
181 PF01855 POR_N: Pyruvate flavo 92.4 0.38 8.1E-06 45.7 6.8 108 243-363 49-157 (230)
182 PRK11269 glyoxylate carboligas 92.4 1.4 3E-05 47.1 11.8 105 245-359 57-163 (591)
183 PRK07789 acetolactate synthase 92.3 1.3 2.8E-05 47.5 11.5 105 245-359 84-189 (612)
184 PRK08978 acetolactate synthase 92.3 1.1 2.4E-05 47.3 10.8 105 245-359 53-158 (548)
185 PRK08199 thiamine pyrophosphat 92.1 1.4 3E-05 46.6 11.3 105 245-359 61-166 (557)
186 PRK07710 acetolactate synthase 91.9 1.4 3.1E-05 46.8 11.2 106 244-359 67-173 (571)
187 PRK09107 acetolactate synthase 91.9 1.4 3E-05 47.2 11.2 105 245-359 64-169 (595)
188 PRK08155 acetolactate synthase 91.9 1.5 3.3E-05 46.5 11.3 105 245-359 66-171 (564)
189 PRK12474 hypothetical protein; 91.8 1.6 3.4E-05 45.9 11.2 105 245-359 58-163 (518)
190 TIGR02720 pyruv_oxi_spxB pyruv 91.8 1.8 3.9E-05 46.1 11.8 105 245-359 53-157 (575)
191 TIGR02418 acolac_catab acetola 91.5 1.9 4.1E-05 45.4 11.5 105 245-359 51-156 (539)
192 PRK08979 acetolactate synthase 91.4 1.7 3.8E-05 46.1 11.2 105 245-359 57-162 (572)
193 TIGR03394 indol_phenyl_DC indo 91.4 1.4 3.1E-05 46.5 10.5 107 245-359 53-163 (535)
194 PRK06965 acetolactate synthase 91.3 2.2 4.7E-05 45.6 11.8 105 245-359 74-179 (587)
195 PRK06882 acetolactate synthase 91.0 2.1 4.5E-05 45.4 11.3 105 245-359 57-162 (574)
196 PRK07282 acetolactate synthase 91.0 1.8 4E-05 45.9 10.9 105 245-359 63-168 (566)
197 PRK08366 vorA 2-ketoisovalerat 91.0 2.4 5.2E-05 43.4 11.2 109 242-363 61-169 (390)
198 PRK08617 acetolactate synthase 90.9 2.2 4.7E-05 45.1 11.2 105 245-359 57-162 (552)
199 PRK06048 acetolactate synthase 90.6 2.3 5.1E-05 45.0 11.2 106 244-359 59-165 (561)
200 PRK05858 hypothetical protein; 90.6 2.5 5.4E-05 44.6 11.4 105 245-359 57-162 (542)
201 PRK08527 acetolactate synthase 90.2 2.7 5.8E-05 44.6 11.3 105 245-359 56-161 (563)
202 CHL00099 ilvB acetohydroxyacid 90.0 2.6 5.7E-05 45.0 11.0 105 245-359 66-171 (585)
203 PLN02573 pyruvate decarboxylas 89.7 2.7 5.8E-05 44.9 10.8 106 245-359 69-180 (578)
204 PRK08327 acetolactate synthase 89.6 2 4.3E-05 45.7 9.7 107 245-359 65-179 (569)
205 cd01460 vWA_midasin VWA_Midasi 89.5 5.7 0.00012 38.7 11.9 84 261-345 166-257 (266)
206 PRK09124 pyruvate dehydrogenas 89.5 3.4 7.4E-05 43.9 11.4 104 245-358 56-159 (574)
207 PRK09627 oorA 2-oxoglutarate-a 89.5 2.4 5.3E-05 43.1 9.8 108 242-360 59-170 (375)
208 TIGR03710 OAFO_sf 2-oxoacid:ac 89.3 2 4.4E-05 45.9 9.5 109 242-361 249-361 (562)
209 cd07036 TPP_PYR_E1-PDHc-beta_l 89.0 3.7 8.1E-05 37.0 9.7 60 287-356 103-163 (167)
210 PRK06154 hypothetical protein; 88.4 4 8.7E-05 43.4 11.0 91 260-359 83-174 (565)
211 PF02779 Transket_pyr: Transke 88.4 6.7 0.00015 35.2 11.0 106 242-358 60-170 (178)
212 PRK06546 pyruvate dehydrogenas 88.3 4.3 9.2E-05 43.4 11.2 105 245-359 56-160 (578)
213 PRK08367 porA pyruvate ferredo 87.4 5.3 0.00012 40.9 10.8 109 242-363 62-172 (394)
214 PRK07092 benzoylformate decarb 87.4 4.9 0.00011 42.3 10.8 106 245-359 63-169 (530)
215 KOG4166 Thiamine pyrophosphate 87.3 4.1 8.8E-05 42.5 9.6 102 245-358 144-248 (675)
216 PRK09622 porA pyruvate flavodo 87.2 4.9 0.00011 41.3 10.4 108 242-362 68-177 (407)
217 TIGR00173 menD 2-succinyl-5-en 87.1 2.3 5.1E-05 43.6 8.0 107 245-359 53-164 (432)
218 TIGR03336 IOR_alpha indolepyru 87.0 3.8 8.3E-05 44.0 9.9 103 243-360 59-163 (595)
219 TIGR00204 dxs 1-deoxy-D-xylulo 86.5 5.2 0.00011 43.3 10.6 101 243-358 365-467 (617)
220 PRK11892 pyruvate dehydrogenas 86.2 5.3 0.00012 41.9 10.1 97 243-356 202-308 (464)
221 COG4032 Predicted thiamine-pyr 85.2 2.6 5.6E-05 37.6 6.1 106 241-356 53-159 (172)
222 TIGR00232 tktlase_bact transke 85.2 5.5 0.00012 43.4 10.0 80 270-357 430-511 (653)
223 COG0674 PorA Pyruvate:ferredox 84.9 6.2 0.00013 40.0 9.7 108 241-361 58-166 (365)
224 PTZ00089 transketolase; Provis 84.6 5.7 0.00012 43.4 9.9 101 244-358 417-519 (661)
225 PRK12571 1-deoxy-D-xylulose-5- 84.3 6.1 0.00013 43.0 9.9 101 243-358 374-476 (641)
226 PRK05899 transketolase; Review 82.5 9.6 0.00021 41.2 10.5 102 243-358 380-483 (624)
227 PLN02683 pyruvate dehydrogenas 82.2 12 0.00027 37.7 10.5 99 242-357 86-194 (356)
228 PRK12315 1-deoxy-D-xylulose-5- 81.8 9.1 0.0002 41.1 9.9 102 243-358 333-434 (581)
229 PRK05444 1-deoxy-D-xylulose-5- 81.5 10 0.00023 40.6 10.2 101 243-358 334-436 (580)
230 PLN02790 transketolase 79.1 11 0.00024 41.2 9.5 77 275-358 431-509 (654)
231 PLN02582 1-deoxy-D-xylulose-5- 78.9 15 0.00032 40.5 10.4 91 259-358 422-513 (677)
232 PLN02234 1-deoxy-D-xylulose-5- 78.8 13 0.00028 40.7 9.8 89 260-357 424-513 (641)
233 TIGR03393 indolpyr_decarb indo 78.1 17 0.00036 38.4 10.4 105 244-359 53-164 (539)
234 PRK12753 transketolase; Review 78.0 13 0.00027 40.8 9.6 102 243-358 415-518 (663)
235 PLN02980 2-oxoglutarate decarb 77.5 8.4 0.00018 46.5 8.7 106 244-359 353-465 (1655)
236 PLN02225 1-deoxy-D-xylulose-5- 75.8 23 0.00049 39.2 10.7 91 259-358 447-538 (701)
237 PTZ00182 3-methyl-2-oxobutanat 75.2 27 0.00058 35.3 10.5 60 287-356 141-201 (355)
238 PRK12754 transketolase; Review 72.4 21 0.00046 39.2 9.5 102 243-358 415-518 (663)
239 PRK09212 pyruvate dehydrogenas 71.1 41 0.0009 33.4 10.6 60 287-356 110-170 (327)
240 COG0021 TktA Transketolase [Ca 68.8 18 0.00039 39.4 7.8 76 276-358 441-518 (663)
241 smart00861 Transket_pyr Transk 68.5 36 0.00078 29.9 8.6 100 243-357 62-163 (168)
242 COG1107 Archaea-specific RecJ- 66.6 8.6 0.00019 41.4 4.8 55 274-337 402-458 (715)
243 CHL00144 odpB pyruvate dehydro 66.3 51 0.0011 32.8 10.1 60 287-356 110-170 (327)
244 PF13519 VWA_2: von Willebrand 64.3 31 0.00068 29.1 7.2 73 259-342 99-171 (172)
245 PF01380 SIS: SIS domain SIS d 62.0 26 0.00056 28.7 6.1 40 257-298 52-91 (131)
246 PF04273 DUF442: Putative phos 57.9 57 0.0012 27.4 7.5 50 310-362 45-97 (110)
247 cd01451 vWA_Magnesium_chelatas 56.8 1.4E+02 0.003 26.3 10.6 72 260-340 99-176 (178)
248 PRK13685 hypothetical protein; 54.5 1.7E+02 0.0037 28.8 11.4 82 260-343 194-286 (326)
249 COG1240 ChlD Mg-chelatase subu 54.4 87 0.0019 30.6 8.9 99 237-342 154-258 (261)
250 cd00640 Trp-synth-beta_II Tryp 53.4 1.7E+02 0.0037 27.0 10.8 67 274-356 59-126 (244)
251 PRK07449 2-succinyl-5-enolpyru 53.2 48 0.001 35.1 7.7 46 245-296 62-107 (568)
252 KOG3384 Selenoprotein [General 52.2 15 0.00032 32.6 3.0 46 82-137 103-148 (154)
253 cd01453 vWA_transcription_fact 50.8 1.4E+02 0.0031 26.8 9.4 71 259-343 107-178 (183)
254 COG2205 KdpD Osmosensitive K+ 50.7 50 0.0011 37.2 7.4 74 259-334 249-323 (890)
255 COG3958 Transketolase, C-termi 50.5 72 0.0016 31.8 7.8 100 242-357 61-164 (312)
256 cd01561 CBS_like CBS_like: Thi 48.7 1.7E+02 0.0036 28.1 10.1 48 273-332 61-109 (291)
257 cd05014 SIS_Kpsf KpsF-like pro 48.7 76 0.0016 26.1 6.8 41 257-299 46-86 (128)
258 COG2515 Acd 1-aminocyclopropan 48.6 1E+02 0.0022 30.9 8.6 86 261-357 65-152 (323)
259 PRK00278 trpC indole-3-glycero 44.8 1.7E+02 0.0038 28.0 9.5 94 250-361 74-170 (260)
260 COG1154 Dxs Deoxyxylulose-5-ph 43.4 1.7E+02 0.0036 32.0 9.8 105 240-357 366-472 (627)
261 COG1303 Uncharacterized protei 43.3 60 0.0013 29.6 5.5 46 312-360 21-66 (179)
262 PRK10490 sensor protein KdpD; 41.5 98 0.0021 35.1 8.3 91 259-357 251-342 (895)
263 PRK06381 threonine synthase; V 41.2 2.4E+02 0.0052 27.5 10.1 65 274-355 72-137 (319)
264 PF14399 Transpep_BrtH: NlpC/p 40.0 1.8E+02 0.0039 27.9 8.9 44 314-361 55-98 (317)
265 cd05009 SIS_GlmS_GlmD_2 SIS (S 39.9 79 0.0017 26.6 5.7 40 257-297 60-99 (153)
266 PRK13683 hypothetical protein; 39.7 33 0.00071 27.9 3.0 38 321-362 13-50 (87)
267 PLN03013 cysteine synthase 38.7 90 0.0019 32.6 6.8 14 317-330 216-229 (429)
268 PRK13406 bchD magnesium chelat 37.3 2.8E+02 0.006 30.1 10.5 92 241-343 474-582 (584)
269 TIGR02176 pyruv_ox_red pyruvat 36.3 2.1E+02 0.0046 33.7 10.1 108 243-362 64-171 (1165)
270 PF10566 Glyco_hydro_97: Glyco 36.3 1.3E+02 0.0028 29.5 7.2 55 273-329 72-126 (273)
271 TIGR01415 trpB_rel pyridoxal-p 35.6 4.9E+02 0.011 26.9 11.7 72 246-332 105-177 (419)
272 cd05710 SIS_1 A subgroup of th 33.8 90 0.0019 25.9 5.0 40 257-298 46-85 (120)
273 TIGR01139 cysK cysteine syntha 33.5 1.6E+02 0.0034 28.4 7.4 62 279-354 71-133 (298)
274 cd05008 SIS_GlmS_GlmD_1 SIS (S 32.5 98 0.0021 25.3 5.0 40 257-298 45-84 (126)
275 PRK11761 cysM cysteine synthas 32.2 3.7E+02 0.008 26.1 9.7 45 274-330 72-117 (296)
276 PRK07476 eutB threonine dehydr 30.7 2.2E+02 0.0047 28.0 7.9 46 274-331 76-122 (322)
277 smart00115 CASc Caspase, inter 30.5 1.9E+02 0.0041 27.3 7.2 57 289-345 9-66 (241)
278 cd05017 SIS_PGI_PMI_1 The memb 30.4 1E+02 0.0022 25.5 4.7 55 257-328 42-96 (119)
279 TIGR03590 PseG pseudaminic aci 30.0 2.9E+02 0.0063 26.4 8.5 35 263-297 2-41 (279)
280 PLN02569 threonine synthase 29.3 3.9E+02 0.0084 28.3 9.9 49 282-342 205-253 (484)
281 cd01987 USP_OKCHK USP domain i 29.0 2.7E+02 0.0059 22.3 7.1 57 275-333 15-73 (124)
282 PLN02522 ATP citrate (pro-S)-l 28.9 2.7E+02 0.0059 30.4 8.8 88 257-350 220-320 (608)
283 cd01450 vWFA_subfamily_ECM Von 28.5 2.5E+02 0.0054 23.2 7.0 39 258-296 102-141 (161)
284 PF03646 FlaG: FlaG protein; 28.4 59 0.0013 26.7 3.0 33 105-142 66-99 (107)
285 COG4231 Indolepyruvate ferredo 28.3 6.5E+02 0.014 27.8 11.3 156 164-360 16-175 (640)
286 PRK13938 phosphoheptose isomer 27.7 1.5E+02 0.0033 27.3 5.9 42 255-298 110-151 (196)
287 TIGR00441 gmhA phosphoheptose 27.6 1.1E+02 0.0023 26.7 4.6 40 257-298 78-117 (154)
288 cd06447 D-Ser-dehyd D-Serine d 27.6 2.1E+02 0.0046 29.5 7.4 40 279-330 148-188 (404)
289 PF05014 Nuc_deoxyrib_tr: Nucl 27.3 1E+02 0.0023 25.2 4.3 40 259-299 62-101 (113)
290 TIGR03127 RuMP_HxlB 6-phospho 27.1 2.3E+02 0.005 24.9 6.8 40 257-298 71-110 (179)
291 PRK12391 tryptophan synthase s 26.8 6E+02 0.013 26.4 10.6 71 246-331 114-185 (427)
292 COG0075 Serine-pyruvate aminot 26.6 1.7E+02 0.0037 30.1 6.4 29 313-341 94-127 (383)
293 TIGR01204 bioW 6-carboxyhexano 26.3 2E+02 0.0042 27.7 6.3 74 275-357 150-232 (232)
294 TIGR00315 cdhB CO dehydrogenas 26.2 1E+02 0.0023 27.8 4.3 39 258-296 26-64 (162)
295 TIGR01138 cysM cysteine syntha 26.0 5.1E+02 0.011 25.0 9.4 46 274-331 68-114 (290)
296 KOG1184 Thiamine pyrophosphate 25.8 2.1E+02 0.0045 30.8 6.9 95 259-360 67-169 (561)
297 cd01452 VWA_26S_proteasome_sub 25.7 2.4E+02 0.0052 25.9 6.7 34 261-294 109-143 (187)
298 PRK10717 cysteine synthase A; 25.6 3.3E+02 0.0072 26.7 8.2 47 273-331 72-119 (330)
299 PRK13936 phosphoheptose isomer 25.5 1.3E+02 0.0028 27.5 4.9 41 256-298 109-149 (197)
300 PRK07328 histidinol-phosphatas 25.1 1.7E+02 0.0037 27.9 5.9 76 276-355 179-255 (269)
301 TIGR00239 2oxo_dh_E1 2-oxoglut 25.1 5.9E+02 0.013 29.4 10.8 105 243-357 660-771 (929)
302 TIGR00260 thrC threonine synth 25.0 5.4E+02 0.012 25.0 9.6 58 274-343 80-138 (328)
303 cd01562 Thr-dehyd Threonine de 24.8 3.5E+02 0.0076 25.8 8.1 41 279-331 79-120 (304)
304 PRK05638 threonine synthase; V 24.7 2.9E+02 0.0063 28.5 7.9 47 273-331 120-167 (442)
305 TIGR01275 ACC_deam_rel pyridox 24.7 5.1E+02 0.011 25.0 9.2 45 275-330 68-113 (311)
306 PRK00414 gmhA phosphoheptose i 24.5 2.1E+02 0.0046 26.0 6.2 41 256-298 109-149 (192)
307 COG0498 ThrC Threonine synthas 24.3 2.6E+02 0.0057 29.0 7.4 69 259-345 127-195 (411)
308 cd01467 vWA_BatA_type VWA BatA 24.3 2.8E+02 0.0061 23.9 6.7 39 259-297 102-142 (180)
309 TIGR02442 Cob-chelat-sub cobal 24.0 3.2E+02 0.0069 29.8 8.3 62 258-328 563-632 (633)
310 cd00032 CASc Caspase, interleu 24.0 2.4E+02 0.0051 26.6 6.5 57 289-345 10-68 (243)
311 PF08806 Sep15_SelM: Sep15/Sel 23.9 50 0.0011 26.2 1.6 33 106-138 42-74 (78)
312 TIGR03186 AKGDH_not_PDH alpha- 23.7 6.2E+02 0.013 29.1 10.6 109 245-358 577-688 (889)
313 PF00205 TPP_enzyme_M: Thiamin 23.7 45 0.00097 28.2 1.4 34 259-292 11-44 (137)
314 cd00198 vWFA Von Willebrand fa 23.4 3.2E+02 0.007 21.9 6.6 37 258-294 100-138 (161)
315 PRK10886 DnaA initiator-associ 23.4 1.4E+02 0.0031 27.6 4.8 40 257-298 108-147 (196)
316 cd05007 SIS_Etherase N-acetylm 23.0 1.4E+02 0.0031 28.5 4.9 40 257-298 117-156 (257)
317 cd06445 ATase The DNA repair p 23.0 1.2E+02 0.0027 23.6 3.7 18 104-121 47-64 (79)
318 PRK08329 threonine synthase; V 22.8 3.1E+02 0.0068 27.3 7.5 38 282-331 122-159 (347)
319 PRK01322 6-carboxyhexanoate--C 22.7 2.9E+02 0.0062 26.8 6.8 76 275-359 157-241 (242)
320 cd05013 SIS_RpiR RpiR-like pro 22.4 3E+02 0.0066 22.2 6.2 40 257-298 59-98 (139)
321 PLN02618 tryptophan synthase, 22.1 4.1E+02 0.009 27.5 8.3 69 246-329 107-176 (410)
322 PF06506 PrpR_N: Propionate ca 22.0 1.8E+02 0.004 25.8 5.2 86 258-348 75-168 (176)
323 PRK06027 purU formyltetrahydro 22.0 5.3E+02 0.011 25.2 8.7 53 258-329 89-144 (286)
324 PLN02565 cysteine synthase 21.9 2.6E+02 0.0056 27.7 6.6 40 279-330 81-121 (322)
325 KOG0369 Pyruvate carboxylase [ 21.8 2.2E+02 0.0048 31.8 6.3 32 261-294 160-191 (1176)
326 PRK06110 hypothetical protein; 21.3 4.3E+02 0.0093 25.9 8.0 67 273-356 78-145 (322)
327 cd01822 Lysophospholipase_L1_l 20.9 3.8E+02 0.0083 22.7 6.8 15 314-328 93-107 (177)
328 PRK08197 threonine synthase; V 20.8 3.6E+02 0.0077 27.4 7.5 38 282-331 145-182 (394)
329 TIGR02482 PFKA_ATP 6-phosphofr 20.3 3.1E+02 0.0067 27.1 6.7 69 260-333 93-172 (301)
330 PRK05772 translation initiatio 20.2 2.9E+02 0.0063 28.2 6.6 61 235-298 175-238 (363)
331 PRK15482 transcriptional regul 20.1 3E+02 0.0065 26.3 6.5 41 256-298 180-220 (285)
332 COG1063 Tdh Threonine dehydrog 20.0 5.1E+02 0.011 25.7 8.3 51 244-298 152-203 (350)
No 1
>KOG1182 consensus Branched chain alpha-keto acid dehydrogenase complex, alpha subunit [Energy production and conversion]
Probab=100.00 E-value=2.8e-86 Score=631.08 Aligned_cols=283 Identities=65% Similarity=1.064 Sum_probs=278.6
Q ss_pred ccccCCCCccCccccccccCCCCCCCCeeEEecCCCCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccc
Q 017890 81 VLDFPGGKVGYTSEMRFIPESSEKRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSF 160 (364)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~~~~g~~~~~~~~~~~s~e~l~~ly~~M~~~R~~D~~~~~~~rqGri~f 160 (364)
..+|||+++.||++|+|++++..+.||||||||.+|++++++++|.++++..++||+.|+++++||+++|+.||||||+|
T Consensus 37 ~~~fpg~ka~ft~kl~fI~~~d~~~iPiYRV~d~~G~ii~~sqdp~~~ee~~~kmy~~M~~Ln~MD~IlYesQRQGRiSF 116 (432)
T KOG1182|consen 37 YKDFPGAKAAFTSKLEFIQPSDTPRIPIYRVMDADGQIIDKSQDPQLSEEVVLKMYKDMTLLNIMDRILYESQRQGRISF 116 (432)
T ss_pred hccCCCCccccccceeecCcccCCCCceEEEecCCCcccCcccCCCcCHHHHHHHHHHHHHHHHHHHHHHHHhhcceEEE
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCchhHHHHHHHhhcCCCcEEEccCCchhHHHhcCCCHHHHHHHHhcCCCCCCCCCCCccccCCCcccccccCCCcc
Q 017890 161 YLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIA 240 (364)
Q Consensus 161 ~~~~~GqEa~~vg~a~aL~~~D~v~~~yR~~g~ll~rG~~~~~~l~~~~g~~~~~~~Gr~mp~H~~~~~~~~~~~sg~LG 240 (364)
|||++||||+.||+++||.|+|+||+|||+.|||+|||++++++++||+||..+.++|||||+||++++.|++++++||.
T Consensus 117 YmT~~GEEa~higSAAAL~p~Dli~gQYREaGVLlwRgftle~f~~qCyGn~~d~gkGrQMPvHyGs~elnf~tisspla 196 (432)
T KOG1182|consen 117 YMTNFGEEAIHIGSAAALEPQDLIYGQYREAGVLLWRGFTLEEFMNQCYGNKSDLGKGRQMPVHYGSKELNFVTISSPLA 196 (432)
T ss_pred EEeccchhhhhhhhhhhCCcccccccccccCceEEEcCccHHHHHHHhcCCccccccccccccccCccccceEEecchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHHhhhccCC-CeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCccHHHHHh
Q 017890 241 TQLPQAVGVAYSLKMEKKD-ACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGR 319 (364)
Q Consensus 241 ~~lp~AvG~A~A~k~~~~~-~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~ 319 (364)
+|||+|+|+|||+|+..++ +++||++|||+++||++|.+||||+++++||||||+||||+||||+.+|+.+++|+.++.
T Consensus 197 tqlpqAvGaaYa~k~~~~nnac~V~yfGdG~aSEGD~HA~~NfAAtle~Pvif~CRNNG~AISTptseQyr~DGIa~kG~ 276 (432)
T KOG1182|consen 197 TQLPQAVGAAYALKMRKKNNACAVTYFGDGAASEGDAHAAFNFAATLECPVIFFCRNNGWAISTPTSEQYRGDGIAVKGP 276 (432)
T ss_pred hccchhhhhhhhhhhcccCCeEEEEEecCCcccccchhhhhhHHHHhCCCEEEEEcCCCeeeccccHHHhcCCceEEecc
Confidence 9999999999999976555 899999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeecc
Q 017890 320 AYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNFL 363 (364)
Q Consensus 320 a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R~ 363 (364)
+||+.++||||||+++||.|+++|+++|..+.+|+|||++|||.
T Consensus 277 aYGi~sIRVDGnD~lAvYnA~k~ARe~av~e~rPvliEamtYRv 320 (432)
T KOG1182|consen 277 AYGIRSIRVDGNDALAVYNAVKEAREMAVTEQRPVLIEAMTYRV 320 (432)
T ss_pred ccceEEEEecCcchHHHHHHHHHHHHHHHhccCchhhhhhhhhh
Confidence 99999999999999999999999999999999999999999995
No 2
>COG1071 AcoA Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion]
Probab=100.00 E-value=6.8e-69 Score=528.30 Aligned_cols=257 Identities=40% Similarity=0.630 Sum_probs=246.8
Q ss_pred CeeEEecCCCCcccCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc-ccccCCchhHHHHHHHhhcCCC-c
Q 017890 107 PCFRVLDDNGELIKGSDFQ--QVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFS-FYLTTIGEEAINIGSAAALSAD-D 182 (364)
Q Consensus 107 ~~~rv~~~~g~~~~~~~~~--~~s~e~l~~ly~~M~~~R~~D~~~~~~~rqGri~-f~~~~~GqEa~~vg~a~aL~~~-D 182 (364)
+.++|++.+|+.+.+.... .+++++++++|+.|+++|.||+++..++|||+|+ |||++.||||++||++.+|+++ |
T Consensus 2 ~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~y~~M~l~R~fd~k~~~l~r~G~i~gf~~~~~GqEA~~vg~~~aL~~~~D 81 (358)
T COG1071 2 SLIRVLDEDGRAVDELPGPNAALSKEELLELYRLMLLIRRFDEKMLQLQRQGKIGGFYHLYIGQEAVQVGAAAALRPGED 81 (358)
T ss_pred CceeccCcccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCcCCcccHHHHHHHHHHhcCCCCC
Confidence 5789999999999876444 7999999999999999999999999999999998 9999999999999999999976 9
Q ss_pred EEEccCCchhHHHhcCCCHHHHHHHHhcCCCCCCCCCCCccccCCCcccccccCCCcccchhHHHHHHHHhhhccCCC-e
Q 017890 183 FILPQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDA-C 261 (364)
Q Consensus 183 ~v~~~yR~~g~ll~rG~~~~~~l~~~~g~~~~~~~Gr~mp~H~~~~~~~~~~~sg~LG~~lp~AvG~A~A~k~~~~~~-~ 261 (364)
|++++||+|++++++|+++.++|.+++|+.+|+++|+++|+|+.+++.++++.++++|+|+|+|+|+|+|.|+++.+. +
T Consensus 82 ~i~~~YR~h~~~l~~G~~~~~~~a~~~G~~~g~~kGr~~~~h~~~~~~~~~~~~~iVg~Q~~~AaG~A~a~k~~~~~~~V 161 (358)
T COG1071 82 WIFPTYRDHGHLLARGVPLKEIMAELLGKATGPCKGRGGSMHYSDKEKGFLGGSGIVGTQIPLAAGAALALKYRGTKDGV 161 (358)
T ss_pred EeecccCccccceecCCCHHHHHHHHhccccCCCCCCCCcccccccccccCCCCceecccccHHHHHHHHHHHhCCCCcE
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999554 9
Q ss_pred EEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhcCeEEEEEeCCCHHHHHHHHH
Q 017890 262 AVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQ 341 (364)
Q Consensus 262 vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~ 341 (364)
++|++|||++++|+|||+||||+.|+|||||+|+||+|+||+|...+...+.++.|+.+||+++++|||||+.+||++++
T Consensus 162 a~~~~GDGat~qG~FhEalN~A~v~klPvvf~ieNN~yAiSvp~~~q~~~~~~~~ra~aygipgv~VDG~D~~avy~~~~ 241 (358)
T COG1071 162 AVAFFGDGATNQGDFHEALNFAAVWKLPVVFVIENNQYAISVPRSRQTAAEIIAARAAAYGIPGVRVDGNDVLAVYEAAK 241 (358)
T ss_pred EEEEecCCccccchHHHHHHHHHHhcCCEEEEEecCCceeecchhhcccchhHHhhhhccCCCeEEECCcCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998878777778889999999999999999999999999
Q ss_pred HHHHHhhcCCCcEEEEEEeecc
Q 017890 342 AAREMAISEKRPVLVEVRLNFL 363 (364)
Q Consensus 342 ~A~~~ar~~~~P~LIea~T~R~ 363 (364)
+|+++||++++|+|||++|||+
T Consensus 242 ~A~e~AR~g~GPtLIE~~tYR~ 263 (358)
T COG1071 242 EAVERARAGEGPTLIEAVTYRY 263 (358)
T ss_pred HHHHHHHcCCCCEEEEEEEeec
Confidence 9999999999999999999997
No 3
>PLN02269 Pyruvate dehydrogenase E1 component subunit alpha
Probab=100.00 E-value=2.5e-60 Score=472.35 Aligned_cols=237 Identities=27% Similarity=0.438 Sum_probs=229.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc-cccccCCchhHHHHHHHhhcCCCcEEEccCCchhHHHhcCCCHHH
Q 017890 125 QQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRF-SFYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQ 203 (364)
Q Consensus 125 ~~~s~e~l~~ly~~M~~~R~~D~~~~~~~rqGri-~f~~~~~GqEa~~vg~a~aL~~~D~v~~~yR~~g~ll~rG~~~~~ 203 (364)
+.+++++++++|+.|+++|.||+++.++++||+| +|||++.||||++||++++|+++||+|++||+|++++++|+++++
T Consensus 25 ~~~~~~~ll~~yr~M~~~R~~e~~~~~l~~~g~i~g~~~~~~GqEA~~vg~~~aL~~~D~~~~~yR~hg~~la~G~~~~~ 104 (362)
T PLN02269 25 VETSKQELVDFFRDMYLMRRMEIAADSLYKAKLIRGFCHLYDGQEAVAVGMEAAITKEDAIITAYRDHCTHLGRGGTVLE 104 (362)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCCCChHHHHHHHHHhcCCCCEEEechhhHHHHHHcCCCHHH
Confidence 4789999999999999999999999999999999 599999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCCCCCCCccccCCCcccccccCCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHH
Q 017890 204 FANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFA 283 (364)
Q Consensus 204 ~l~~~~g~~~~~~~Gr~mp~H~~~~~~~~~~~sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~A 283 (364)
+|.+++|+.+|+++|+++++|+.+++.|+++.++++|+|+|+|+|+|+|.|+++.+.+++|++|||+++||.|||+||+|
T Consensus 105 ~~ae~~g~~~g~~~GrggsmH~~~~~~~~~~~~~~vG~~~p~A~G~A~A~k~~~~~~v~v~~~GDGa~~eG~~~Ealn~A 184 (362)
T PLN02269 105 VFAELMGRKDGCSRGKGGSMHFYKKDANFYGGHGIVGAQVPLGAGLAFAQKYNKEENVAFALYGDGAANQGQLFEALNIA 184 (362)
T ss_pred HHHHHcCCCCCCCCCCCCcccccchhcCccccCchhhccccHHHHHHHHHHHhCCCCeEEEEECCCCcccCHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeecc
Q 017890 284 AVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNFL 363 (364)
Q Consensus 284 a~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R~ 363 (364)
+.|+||+||||+||+|+++++..++.....+++++ +++++++|||||+++|++++++|++++|+ ++|+|||++|||+
T Consensus 185 ~~~~lPvvfvveNN~~aist~~~~~~~~~~~~~~~--~~~p~~~VDG~D~~av~~a~~~A~~~aR~-~gP~lIe~~tyR~ 261 (362)
T PLN02269 185 ALWDLPVIFVCENNHYGMGTAEWRAAKSPAYYKRG--DYVPGLKVDGMDVLAVKQACKFAKEHALS-NGPIVLEMDTYRY 261 (362)
T ss_pred hccCcCEEEEEeCCCEeccCchhhhccchHHHHhh--cCCCeEEECCCCHHHHHHHHHHHHHHHHh-CCCEEEEEecCcC
Confidence 99999999999999999999988888878887655 68999999999999999999999999999 9999999999998
Q ss_pred C
Q 017890 364 W 364 (364)
Q Consensus 364 ~ 364 (364)
+
T Consensus 262 ~ 262 (362)
T PLN02269 262 H 262 (362)
T ss_pred C
Confidence 5
No 4
>CHL00149 odpA pyruvate dehydrogenase E1 component alpha subunit; Reviewed
Probab=100.00 E-value=2.2e-59 Score=462.74 Aligned_cols=242 Identities=24% Similarity=0.387 Sum_probs=233.1
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc-cccccCCchhHHHHHHHhhcCCCcEEEccCCchhHHHhcCCCH
Q 017890 123 DFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRF-SFYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTL 201 (364)
Q Consensus 123 ~~~~~s~e~l~~ly~~M~~~R~~D~~~~~~~rqGri-~f~~~~~GqEa~~vg~a~aL~~~D~v~~~yR~~g~ll~rG~~~ 201 (364)
+.+.+++|+++++|+.|+++|.||+++.++++||+| +|||++.||||++||++.+|+++||+|++||+|++++++|+++
T Consensus 13 ~~~~~~~~~ll~~y~~M~~~R~~e~~~~~~~~~g~i~g~~~~~~GqEa~~vg~~~al~~~D~~~~~yR~~~~~la~G~~~ 92 (341)
T CHL00149 13 NENNINSMWLLVLYEDMLLGRNFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGVIKLLAETDYVCSTYRDHVHALSKGVPP 92 (341)
T ss_pred cccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCCCChHHHHHHHHHhCCCCCEEEcccccHHHHHHcCCCH
Confidence 345799999999999999999999999999999999 6999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCCCCCCccccCCCcccccccCCCcccchhHHHHHHHHhhhcc-------CCCeEEEEeCCCccccc
Q 017890 202 QQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEK-------KDACAVAYTGDGGTSEG 274 (364)
Q Consensus 202 ~~~l~~~~g~~~~~~~Gr~mp~H~~~~~~~~~~~sg~LG~~lp~AvG~A~A~k~~~-------~~~~vv~~~GDGa~~eG 274 (364)
+++|.+++|+.+|+++|+++++|+.+++.++++.+++||+++|+|+|+|+|.|+++ ++++|||++|||++++|
T Consensus 93 ~~~~ae~~g~~~g~~~Gr~gs~H~~~~~~~~~~~~g~lG~~lp~AvGaa~A~k~~~~~~~~~~~~~vvv~~~GDGa~~~G 172 (341)
T CHL00149 93 KNVMAELFGKETGCSRGRGGSMHIFSAPHNFLGGFAFIGEGIPIALGAAFQSIYRQQVLKEVQPLRVTACFFGDGTTNNG 172 (341)
T ss_pred HHHHHHHcCCCCCCCCCCCCCccccchhcCccCCChhhhccHHHHHHHHHHHHHhccccccCCCCCEEEEEeCCchhhhc
Confidence 99999999999999999999999998888999999999999999999999999886 58999999999999999
Q ss_pred cHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcE
Q 017890 275 DFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPV 354 (364)
Q Consensus 275 ~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~ 354 (364)
.+||+||+|+.|+||+||||+||+|+++++...+....++++++++||+++++|||+|++++++++++|++++|++++|+
T Consensus 173 ~~~Ealn~A~~~~LPvifvv~NN~~~i~~~~~~~~~~~d~a~~a~a~G~~~~~Vdg~d~~av~~a~~~A~~~ar~~~gP~ 252 (341)
T CHL00149 173 QFFECLNMAVLWKLPIIFVVENNQWAIGMAHHRSTSIPEIHKKAEAFGLPGIEVDGMDVLAVREVAKEAVERARQGDGPT 252 (341)
T ss_pred HHHHHHHHHhhcCCCEEEEEEeCCeeeecchhheeCCccHHHHHHhCCCCEEEEeCCCHHHHHHHHHHHHHHHHhCCCCE
Confidence 99999999999999999999999999999988887788999999999999999999999999999999999999999999
Q ss_pred EEEEEeeccC
Q 017890 355 LVEVRLNFLW 364 (364)
Q Consensus 355 LIea~T~R~~ 364 (364)
|||++|||++
T Consensus 253 lIev~tyR~~ 262 (341)
T CHL00149 253 LIEALTYRFR 262 (341)
T ss_pred EEEEEEecCC
Confidence 9999999985
No 5
>TIGR03182 PDH_E1_alph_y pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=100.00 E-value=2.6e-59 Score=457.86 Aligned_cols=236 Identities=29% Similarity=0.485 Sum_probs=229.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCcc-cccccCCchhHHHHHHHhhcCCCcEEEccCCchhHHHhcCCCHHHHHHH
Q 017890 129 KEVAVKMYSHMVTLQVMDSVLYEAQRQGRF-SFYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQFANQ 207 (364)
Q Consensus 129 ~e~l~~ly~~M~~~R~~D~~~~~~~rqGri-~f~~~~~GqEa~~vg~a~aL~~~D~v~~~yR~~g~ll~rG~~~~~~l~~ 207 (364)
+|+++++|+.|+++|.||+++.+++|||+| +|+|++.||||++||++.+|+++||+|++||+|++++++|++++++|.+
T Consensus 1 ~~~l~~~y~~M~~~R~~d~~~~~l~~~g~~~~~~~~~~GqEa~~vg~~~al~~~D~~~~~yR~~~~~la~G~~~~~~~~~ 80 (315)
T TIGR03182 1 KEELLELYRDMLLIRRFEEKAGQLYGMGKIGGFCHLYIGQEAVAVGLIAALKPDDYVITSYRDHGHALARGVPPKEVMAE 80 (315)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHhCCccccccCCCCChHHHHHHHHHhCCCCCEEEechhhHHHHHHcCCCHHHHHHH
Confidence 478999999999999999999999999999 5899999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCCCCCCCCccccCCCcccccccCCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcC
Q 017890 208 VFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVME 287 (364)
Q Consensus 208 ~~g~~~~~~~Gr~mp~H~~~~~~~~~~~sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~ 287 (364)
++|+.+|+++||++++|+.+++.|+.+.+++||+++|+|+|+|+|.|+++++++|||++|||++++|.+||+||+|+.++
T Consensus 81 ~~g~~~g~~~Gr~g~~h~~~~~~~~~~~~g~~G~~lp~AiGaa~A~~~~~~~~~vv~~~GDGa~~~g~~~ealn~A~~~~ 160 (315)
T TIGR03182 81 LTGRATGCSKGKGGSMHMFDREKNFYGGHGIVGAQVPLATGLAFANKYRGNDNVTACFFGDGAANQGQFYESFNMAALWK 160 (315)
T ss_pred HcCCCCCCCCCCCCCCCcCchhhCcccCcCcccccccHHHHHHHHHHHhCCCCEEEEEeCCCcccccHHHHHHHHhhccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEEEcCCcccccccccccCCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeeccC
Q 017890 288 APVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNFLW 364 (364)
Q Consensus 288 LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R~~ 364 (364)
+|+||||.||+|+++++...+....++++++++||+++++|||+|++++++++++|++++|++++|+|||++|||++
T Consensus 161 lPvi~vv~NN~yg~s~~~~~~~~~~~~a~~A~a~G~~~~~Vdg~d~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~ 237 (315)
T TIGR03182 161 LPVIFVIENNLYAMGTSVERSSSVTDLYKRGESFGIPGERVDGMDVLAVREAAKEAVERARSGKGPILLEMKTYRFR 237 (315)
T ss_pred cCEEEEEEcCCccccCCHHHHhCCcCHHHHHHhCCCCEEEECCCCHHHHHHHHHHHHHHHHccCCCEEEEEeCCcCC
Confidence 99999999999999999888887889999999999999999999999999999999999999999999999999985
No 6
>PLN02374 pyruvate dehydrogenase (acetyl-transferring)
Probab=100.00 E-value=1e-57 Score=462.27 Aligned_cols=242 Identities=28% Similarity=0.414 Sum_probs=233.3
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc-cccccCCchhHHHHHHHhhcCCCcEEEccCCchhHHHhcCCCH
Q 017890 123 DFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRF-SFYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTL 201 (364)
Q Consensus 123 ~~~~~s~e~l~~ly~~M~~~R~~D~~~~~~~rqGri-~f~~~~~GqEa~~vg~a~aL~~~D~v~~~yR~~g~ll~rG~~~ 201 (364)
..+.+++|+++++|+.|+++|.||+++.++++||+| +|+|++.||||++||++++|+++||+|++||+|+++|++|+++
T Consensus 79 ~~~~ls~e~ll~lyr~M~~~R~fEe~~~~l~~~Gki~g~~h~~~GqEA~~vg~~~aL~~~D~v~~~yR~h~~~La~G~~~ 158 (433)
T PLN02374 79 SDLLVTREEGLELYEDMVLGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKDDSVVSTYRDHVHALSKGVPA 158 (433)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceeccCCCCCcHHHHHHHHHHcCCCCEEEccCcChHHhhhcCCCH
Confidence 345899999999999999999999999999999999 7999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCCCCCCccccCCCcccccccCCCcccchhHHHHHHHHhhhcc-------CCCeEEEEeCCCccccc
Q 017890 202 QQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEK-------KDACAVAYTGDGGTSEG 274 (364)
Q Consensus 202 ~~~l~~~~g~~~~~~~Gr~mp~H~~~~~~~~~~~sg~LG~~lp~AvG~A~A~k~~~-------~~~~vv~~~GDGa~~eG 274 (364)
+++|+|++|+.+++++|+++++|+.+++.++.+.+++||+++|+|+|+|+|.|+++ ++++|||++|||++++|
T Consensus 159 ~~~mael~Gk~~g~~~GrggsmH~~~~~~~~~g~~g~lG~~lP~AvGaA~A~k~~~~~~~~~~~~~vvv~~~GDGa~~eG 238 (433)
T PLN02374 159 RAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFSSKYRREVLKEESCDDVTLAFFGDGTCNNG 238 (433)
T ss_pred HHHHHHHcCCCCCCCCCCCCcCccCchhhCCCCCceeccCchhHHHHHHHHHHHhhccccccCCCCEEEEEECCCccccC
Confidence 99999999999999999999999999889999999999999999999999999875 48899999999999999
Q ss_pred cHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcE
Q 017890 275 DFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPV 354 (364)
Q Consensus 275 ~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~ 354 (364)
.|||+||+|+.|+|||||||+||+|+|+++...++..+++++++++||+++++|||+|+++|++++++|++++|++++|+
T Consensus 239 ~f~EaLn~A~~~~LPvIfVV~NN~yaig~~~~~~t~~~dia~~A~a~G~~~~~VDG~D~~av~~a~~~A~~~Ar~g~gP~ 318 (433)
T PLN02374 239 QFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPEIWKKGPAFGMPGVHVDGMDVLKVREVAKEAIERARRGEGPT 318 (433)
T ss_pred hHHHHHHHHHHhCCCEEEEEeCCCEeecceeeeccCCCCHHHHHHhcCCcEEEECCCCHHHHHHHHHHHHHHHHHcCCCE
Confidence 99999999999999999999999999999988887778999999999999999999999999999999999999999999
Q ss_pred EEEEEeeccC
Q 017890 355 LVEVRLNFLW 364 (364)
Q Consensus 355 LIea~T~R~~ 364 (364)
|||++|||++
T Consensus 319 LIe~~tyR~~ 328 (433)
T PLN02374 319 LVECETYRFR 328 (433)
T ss_pred EEEEEEEecC
Confidence 9999999985
No 7
>TIGR03181 PDH_E1_alph_x pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=100.00 E-value=3.4e-57 Score=447.27 Aligned_cols=249 Identities=41% Similarity=0.602 Sum_probs=235.0
Q ss_pred CeeEEecCCCCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccCCchhHHHHHHHhhcCCCcEEEc
Q 017890 107 PCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALSADDFILP 186 (364)
Q Consensus 107 ~~~rv~~~~g~~~~~~~~~~~s~e~l~~ly~~M~~~R~~D~~~~~~~rqGri~f~~~~~GqEa~~vg~a~aL~~~D~v~~ 186 (364)
|+||||+.+|...+++..+.+++++++++|+.|+++|.||+++.++++||+|+|||+++||||++||++.+|+++|++|+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~y~~m~~~R~~e~~~~~~~~~g~i~~~~~~~GqEa~~vg~~~al~~~D~~~~ 80 (341)
T TIGR03181 1 ELVQVLDEDGNVVDPEPAPDLSDEELVELYRDMVLTRRFDTKALALQRQGRLGTYAPNLGQEAAQVGSALALRKDDWVFP 80 (341)
T ss_pred CceEEECCCCCcCCccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCceecccCCCChHHHHHHHHHHcCCCCEEEc
Confidence 68999999999877665678999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCchhHHHhcCCCHHHHHHHHhcCCCCCCCCCCCccccCCCcccccccCCCcccchhHHHHHHHHhhhccCCCeEEEEe
Q 017890 187 QYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYT 266 (364)
Q Consensus 187 ~yR~~g~ll~rG~~~~~~l~~~~g~~~~~~~Gr~mp~H~~~~~~~~~~~sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~ 266 (364)
+||+|++++++|+++.++|++++|+.++ +.+ .++.|+++.+++||.++|+|+|+|+|.|+.+++++|||++
T Consensus 81 ~yR~h~~~l~~G~~~~~~~ae~~g~~~g----~~~-----~~~~~~~g~~~~vG~~lp~AiGaAla~k~~~~~~~vv~~~ 151 (341)
T TIGR03181 81 SYRDHAAMLARGVPLVEILLYWRGDERG----SWD-----PEGVNILPPNIPIGTQYLHAAGVAYALKLRGEDNVAVTYF 151 (341)
T ss_pred chhhHHHHHHcCCCHHHHHHHhcCcCcC----CCC-----chhcCccCCCchHhcchhHHHhHHHHHHhhCCCCEEEEEe
Confidence 9999999999999999999999998643 322 3568999999999999999999999999999999999999
Q ss_pred CCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHH
Q 017890 267 GDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREM 346 (364)
Q Consensus 267 GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ 346 (364)
|||++++|.+||+||+|+.++||+||||.||+|+++++...+....++++++++||+++++|||+|..+|++++++|+++
T Consensus 152 GDGa~~~g~~~EaL~tA~~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~d~~av~~a~~~A~~~ 231 (341)
T TIGR03181 152 GDGGTSEGDFYEALNFAGVFKAPVVFFVQNNQWAISVPRSKQTAAPTLAQKAIAYGIPGVQVDGNDVLAVYAVTKEAVER 231 (341)
T ss_pred cCCccccChHHHHHHHHhccCCCEEEEEECCCCccccchhhhhCCcCHHHHHhhCCCCEEEECCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998777777789999999999999999999999999999999999
Q ss_pred hhcCCCcEEEEEEeeccC
Q 017890 347 AISEKRPVLVEVRLNFLW 364 (364)
Q Consensus 347 ar~~~~P~LIea~T~R~~ 364 (364)
++++++|+|||++|||++
T Consensus 232 a~~~~gP~lIev~t~R~~ 249 (341)
T TIGR03181 232 ARSGGGPTLIEAVTYRLG 249 (341)
T ss_pred HHcCCCCEEEEEEeecCC
Confidence 999999999999999975
No 8
>cd02000 TPP_E1_PDC_ADC_BCADC Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC). PDC catalyzes the irreversible oxidative decarboxylation of pyruvate to produce acetyl-CoA in the bridging step between glycolysis and the citric acid cycle. ADC participates in the breakdown of acetoin while BCADC participates in the breakdown of branched chain amino acids. BCADC catalyzes the oxidative decarboxylation of 4-methyl-2-oxopentanoate, 3-methyl-2-oxopentanoate and 3-methyl-2-oxobutanoate (branched chain 2-oxo acids derived from the transamination of leucine, valine and isoleucine).
Probab=100.00 E-value=1.8e-56 Score=433.29 Aligned_cols=230 Identities=43% Similarity=0.669 Sum_probs=223.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCcccc-cccCCchhHHHHHHHhhcCCCcEEEccCCchhHHHhcCCCHHHHHHHHhcCCC
Q 017890 135 MYSHMVTLQVMDSVLYEAQRQGRFSF-YLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQFANQVFANKA 213 (364)
Q Consensus 135 ly~~M~~~R~~D~~~~~~~rqGri~f-~~~~~GqEa~~vg~a~aL~~~D~v~~~yR~~g~ll~rG~~~~~~l~~~~g~~~ 213 (364)
+|+.|+++|.||+++.+++|||+++| ||++.||||++||++.+|+++||++++||+|++++++|++++++|.+++|+.+
T Consensus 1 ~y~~m~~~R~~e~~~~~~~~~g~~~~~~~~~~GqEa~~vg~~~~l~~~D~~~~~yR~~~~~la~G~~~~~~~~e~~g~~~ 80 (293)
T cd02000 1 LYRTMVLIRRFDERLLELYRQGKIGGFYHLSIGQEAVAVGVAAALRPGDWVFPTYRDHGHALARGVDLKEMLAELFGKET 80 (293)
T ss_pred CHHHHHHHHHHHHHHHHHHHCCccccccCCCCChHHHHHHHHHHCCCCCEEEecchhHHHHHHcCCCHHHHHHHHcCCCC
Confidence 59999999999999999999999985 99999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCccccCCCcccccccCCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEE
Q 017890 214 DDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFI 293 (364)
Q Consensus 214 ~~~~Gr~mp~H~~~~~~~~~~~sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfV 293 (364)
|+++|+++++|+.+++.++++.+|+||+++|+|+|+|+|.|+.+++++|||++|||++++|.++|+|++|+.+++|+|||
T Consensus 81 g~~~G~~g~~h~~~~~~~~~~~~g~lG~~~p~a~G~a~a~k~~~~~~~vv~~~GDGa~~~g~~~E~l~~A~~~~lPvi~v 160 (293)
T cd02000 81 GPCKGRGGSMHIGDKEKNFFGGNGIVGGQVPLAAGAALALKYRGEDRVAVCFFGDGATNEGDFHEALNFAALWKLPVIFV 160 (293)
T ss_pred CCCCCCCCCCCCCchhcCccccccccccchhHHHHHHHHHHHhCCCCEEEEEeCCCccccchHHHHHHHHHhhCCCEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCcccccccccccCCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeeccC
Q 017890 294 CRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNFLW 364 (364)
Q Consensus 294 V~NNg~ais~~~~~~~~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R~~ 364 (364)
|+||+|+++++...+....++++++++||+++++|||+|++++++++++|++++|++++|+|||++|||.+
T Consensus 161 v~NN~~~i~~~~~~~~~~~~~~~~a~a~G~~~~~Vdg~d~~~v~~a~~~A~~~ar~~~~P~lIev~~~r~~ 231 (293)
T cd02000 161 CENNGYAISTPTSRQTAGTSIADRAAAYGIPGIRVDGNDVLAVYEAAKEAVERARAGGGPTLIEAVTYRLG 231 (293)
T ss_pred EeeCCeeccCCHHHHhCCccHHHHHHhCCCCEEEECCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEeccC
Confidence 99999999999887777789999999999999999999999999999999999999999999999999974
No 9
>PF00676 E1_dh: Dehydrogenase E1 component; InterPro: IPR001017 This entry includes a number of dehydrogenases all of which use thiamine pyrophosphate as a cofactor and are members of a multienzyme complex. Pyruvate dehydrogenase (1.2.4.1 from EC), a component of the multienzyme pyruvate dehydrogenase complex; 2-oxoglutarate dehydrogenase (1.2.4.2 from EC), a component of the multienzyme 2-oxoglutarate dehydrogenase which contains multiple copies of three enzymatic components: 2-oxoglutarate dehydrogenase (E1), dihydrolipoamide succinyltransferase (E2) and lipoamide dehydrogenase (E3); and 2-oxoisovalerate dehydrogenase (1.2.4.4 from EC), a component of the multienzyme branched-chain alpha-keto dehydrogenase complex all belong to this family.; GO: 0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor, 0008152 metabolic process; PDB: 1X7Y_A 1V1M_A 1X7W_A 1OLU_A 2J9F_A 2BEW_A 1V11_A 2BFE_A 1U5B_A 2BEU_A ....
Probab=100.00 E-value=1e-55 Score=429.83 Aligned_cols=228 Identities=43% Similarity=0.688 Sum_probs=214.4
Q ss_pred HHHHHHHHHHHHHHHHHHhcCcccccccCCchhHHHHHHHhhcCCCcEEEccCCchhHHHhcCCCHHHHHHHHhcCCCCC
Q 017890 136 YSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQFANQVFANKADD 215 (364)
Q Consensus 136 y~~M~~~R~~D~~~~~~~rqGri~f~~~~~GqEa~~vg~a~aL~~~D~v~~~yR~~g~ll~rG~~~~~~l~~~~g~~~~~ 215 (364)
|+.|+..|..|+++..+++||+.+|++++.||||++++++.+|+++||||++||+|+.+|++|++++++|.+++|+..+.
T Consensus 1 y~~m~~~r~~d~~~~~~~~~~~~g~~~~~~GqEa~~v~~~~~l~~~D~v~~~yR~~~~~la~g~~~~~~~~e~~g~~~g~ 80 (300)
T PF00676_consen 1 YRMMLIRRFEDERARKLQRQGRFGFYHLSAGQEAIQVAAAAALRPGDWVFPYYRDHGHALARGIDLEEIFAELLGKAKGH 80 (300)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSSSCTT-TTTCHHHHHHHHHHSCTTSEEEECSTTHHHHHHTTT-HHHHHHHHHTBTTST
T ss_pred CchHHHHHHHHHHHHHHhhCCCeEEecchHHHHHHHHHHHHhccCCCEEEecccchhhhhhccccccchhHHhcCcccCC
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999877
Q ss_pred CCCCCCccccCCCcccccccCCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEE
Q 017890 216 GKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICR 295 (364)
Q Consensus 216 ~~Gr~mp~H~~~~~~~~~~~sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~ 295 (364)
+.|++ +.|...++.++++.++++|.++|+|+|.|+|.|+++.+.+++|++|||++++|+|||+||+|+.|+|||||||+
T Consensus 81 ~g~~~-~~~~~~~~~~~~~~~~~vg~~~p~a~G~A~a~k~~~~~~v~v~~~GDga~~qG~~~EalN~A~~~~lPvifvve 159 (300)
T PF00676_consen 81 GGGRH-PLHFSDKGLNILGASSPVGAQVPIAAGVALAIKYRGKDGVVVCFFGDGATSQGDFHEALNLAALWKLPVIFVVE 159 (300)
T ss_dssp TTTGC-TTEEEBTTTTBEEEESSTTTHHHHHHHHHHHHHHTTSSEEEEEEEETGGGGSHHHHHHHHHHHHTTTSEEEEEE
T ss_pred CCCcc-ccccccccceeeeccccccccCccccchhHhhhhcCCceeEEEEecCcccccCccHHHHHHHhhccCCeEEEEe
Confidence 77777 88988888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcccccccccccCCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeeccC
Q 017890 296 NNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNFLW 364 (364)
Q Consensus 296 NNg~ais~~~~~~~~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R~~ 364 (364)
||+|+|||+..+++...+++++|++||+++++|||||+++|++++++|++++|++++|+|||++|||++
T Consensus 160 NN~~aist~~~~~~~~~~~~~~a~~~gip~~~VDG~D~~av~~a~~~A~~~~R~g~gP~lie~~tyR~~ 228 (300)
T PF00676_consen 160 NNQYAISTPTEEQTASPDIADRAKGYGIPGIRVDGNDVEAVYEAAKEAVEYARAGKGPVLIEAVTYRLR 228 (300)
T ss_dssp EESEETTEEHHHHCSSSTSGGGGGGTTSEEEEEETTSHHHHHHHHHHHHHHHHTTT--EEEEEEE--SS
T ss_pred cCCcccccCccccccccchhhhhhccCCcEEEECCEeHHHHHHHHHHHHHHHhcCCCCEEEEEeeccCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999985
No 10
>KOG0225 consensus Pyruvate dehydrogenase E1, alpha subunit [Energy production and conversion]
Probab=100.00 E-value=8.9e-53 Score=404.27 Aligned_cols=237 Identities=29% Similarity=0.489 Sum_probs=228.8
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc-cccccCCchhHHHHHHHhhcCCCcEEEccCCchhHHHhcCCCHH
Q 017890 124 FQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRF-SFYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQ 202 (364)
Q Consensus 124 ~~~~s~e~l~~ly~~M~~~R~~D~~~~~~~rqGri-~f~~~~~GqEa~~vg~a~aL~~~D~v~~~yR~~g~ll~rG~~~~ 202 (364)
...+++|+++++|++|+++|.||..+-.++.+++| +|+|.+.||||+.||+-+++++.|.|+.+||+|++.+.+|.++.
T Consensus 53 s~~~t~ee~L~~Y~~M~~~RrmE~aad~lYK~k~IRGFCHLy~GQEAvavGme~ait~~D~iItsYR~Hg~~~~~G~S~~ 132 (394)
T KOG0225|consen 53 SVELTKEEALKYYRDMQTIRRMELAADQLYKAKKIRGFCHLYDGQEAVAVGMEAAITKSDSIITSYRCHGWTYLRGVSVR 132 (394)
T ss_pred eEEecHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhceeeeecccHHHHHHHHHHhccCCCceEEEeeeeeEEeecCccHH
Confidence 44789999999999999999999999999999999 69999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCCCCCCCccccCCCcccccccCCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHH
Q 017890 203 QFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNF 282 (364)
Q Consensus 203 ~~l~~~~g~~~~~~~Gr~mp~H~~~~~~~~~~~sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~ 282 (364)
++|.+++|+..|+++|.+.++|...+ +|++..|.+|.|+|.++|+|+|.|+++++.+++++.|||+.++|+++|++|+
T Consensus 133 ~v~aEL~Gr~~Gc~kGKGGSMHmy~k--~FyGGnGIVGAQiPLGaGia~A~kY~~~~~v~~alYGDGAaNQGQ~fEa~NM 210 (394)
T KOG0225|consen 133 EVLAELMGRQAGCSKGKGGSMHMYAK--NFYGGNGIVGAQIPLGAGIAFAQKYNREDAVCFALYGDGAANQGQVFEAFNM 210 (394)
T ss_pred HHHHHHhccccccccCCCcceeeecc--cccCccceeccCCCccccHHHHHHhccCCceEEEEeccccccchhHHHHhhH
Confidence 99999999999999999999998865 4999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q 017890 283 AAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNF 362 (364)
Q Consensus 283 Aa~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R 362 (364)
|+.|+||+||||+||.|++.|+..+....+++.+|+ .| +|+++|||+|+++|++|.+.|+++++++++|+|+|+.|||
T Consensus 211 A~LW~LP~IFvCENN~yGMGTs~~Rasa~teyykRG-~y-iPGl~VdGmdvlaVr~a~KfA~~~~~~g~GPilmE~~TYR 288 (394)
T KOG0225|consen 211 AALWKLPVIFVCENNHYGMGTSAERASASTEYYKRG-DY-IPGLKVDGMDVLAVREATKFAKKYALEGKGPILMEMDTYR 288 (394)
T ss_pred HHHhCCCEEEEEccCCCccCcchhhhhcChHHHhcc-CC-CCceEECCcchhhHHHHHHHHHHHHhcCCCCEEEEEeeee
Confidence 999999999999999999999999888889999998 56 9999999999999999999999999999999999999999
Q ss_pred cC
Q 017890 363 LW 364 (364)
Q Consensus 363 ~~ 364 (364)
++
T Consensus 289 y~ 290 (394)
T KOG0225|consen 289 YH 290 (394)
T ss_pred ec
Confidence 75
No 11
>cd02016 TPP_E1_OGDC_like Thiamine pyrophosphate (TPP) family, E1 of OGDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the 2-oxoglutarate dehydrogenase multienzyme complex (OGDC). OGDC catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA and carbon dioxide, a key reaction of the tricarboxylic acid cycle.
Probab=100.00 E-value=4.6e-44 Score=341.52 Aligned_cols=216 Identities=19% Similarity=0.197 Sum_probs=196.0
Q ss_pred HHHHHHHHHh-cCcccccccCCchhHHHHHHHhhcCC------CcEEEcc-CCchhHHHh--cCCCHHHHHHHHhcCCC-
Q 017890 145 MDSVLYEAQR-QGRFSFYLTTIGEEAINIGSAAALSA------DDFILPQ-YREPGVLLW--RGYTLQQFANQVFANKA- 213 (364)
Q Consensus 145 ~D~~~~~~~r-qGri~f~~~~~GqEa~~vg~a~aL~~------~D~v~~~-yR~~g~ll~--rG~~~~~~l~~~~g~~~- 213 (364)
||+.+...+. ++|. ++.|+|++++++...+++ +|+|+++ ||++..+|. +|++++++|.++.|+.+
T Consensus 1 ~e~f~~~~f~~~krf----s~eG~Es~~~~l~~~~~~~~~~~~~d~v~gm~HRgrln~L~~~lg~~~~~if~ef~g~~~~ 76 (265)
T cd02016 1 FEQFLATKFPGQKRF----GLEGAESLIPALDELIDRAAELGVEEVVIGMAHRGRLNVLANVLGKPLEQIFSEFEGKSEF 76 (265)
T ss_pred ChhhHHHhcCCCeEE----EecCHHHHHHHHHHHHHHHHhcCCCeEEeccCcCCcHHHHHHHhCCCHHHHHHHhhCCCCC
Confidence 4556655553 4443 489999999999999987 7999998 999999999 99999999999999877
Q ss_pred --CCCCCCCCccccCCCc-----------ccccccCCCcccchhHHHHHHHHhhhcc-----CCCeEEEEeCCCcc-ccc
Q 017890 214 --DDGKGRQMPIHYGSKK-----------LNYITISSPIATQLPQAVGVAYSLKMEK-----KDACAVAYTGDGGT-SEG 274 (364)
Q Consensus 214 --~~~~Gr~mp~H~~~~~-----------~~~~~~sg~LG~~lp~AvG~A~A~k~~~-----~~~~vv~~~GDGa~-~eG 274 (364)
+...++++..|++... ..+.+++|+||.++|+|+|+|+|.|+++ .+.++||++|||++ +||
T Consensus 77 ~~~~~~~gdv~yHlg~~~~~~~~~~~~~~~~l~~npS~l~~~~pva~G~A~A~k~~~~~~~~~~~v~v~~~GDgA~~~qG 156 (265)
T cd02016 77 PEDDEGSGDVKYHLGYSSDRKTPSGKKVHLSLAPNPSHLEAVNPVVMGKTRAKQDYRGDGERDKVLPILIHGDAAFAGQG 156 (265)
T ss_pred CCCCCCCCCcCcCCccCcccccCCCCeeEEEecCCCcccccccCeehhHHHHHHHhcCCccCCCeEEEEEecCccccCCC
Confidence 4456889999997654 4578889999999999999999999987 47899999999996 699
Q ss_pred cHHHHHHHHHHcCCC---EEEEEEcCCcccccccccccCCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCC
Q 017890 275 DFHAALNFAAVMEAP---VVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEK 351 (364)
Q Consensus 275 ~~~EALn~Aa~~~LP---vIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~ 351 (364)
.|||+||+|+.+++| +||||+||+|+++|+..++.+...++++|++||+++++|||+|+++|++++++|++++|+++
T Consensus 157 ~~~EalNlA~l~~lp~gg~ifvveNNq~g~sT~~~~~~~~~~~~~~a~~~gip~~~VdG~D~~aV~~a~~~A~~~~r~g~ 236 (265)
T cd02016 157 VVYETLNLSNLPGYTTGGTIHIVVNNQIGFTTDPRDSRSSPYCTDVAKMIGAPIFHVNGDDPEAVVRATRLALEYRQKFK 236 (265)
T ss_pred hHHHHHHHHHhcCCCCCCEEEEEEeCCEEEEecHHHhcccccHHHHHeecCCCEEEEcCCCHHHHHHHHHHHHHHHHhcC
Confidence 999999999999998 99999999999999999898888999999999999999999999999999999999999999
Q ss_pred CcEEEEEEeeccC
Q 017890 352 RPVLVEVRLNFLW 364 (364)
Q Consensus 352 ~P~LIea~T~R~~ 364 (364)
+|+|||++|||+|
T Consensus 237 gp~lIe~~tYR~~ 249 (265)
T cd02016 237 KDVVIDLVCYRRH 249 (265)
T ss_pred CCEEEEEEEecCC
Confidence 9999999999986
No 12
>PRK09404 sucA 2-oxoglutarate dehydrogenase E1 component; Reviewed
Probab=100.00 E-value=2.7e-42 Score=374.16 Aligned_cols=236 Identities=14% Similarity=0.101 Sum_probs=210.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccCCchhHHHHHHHh------hcCCCcEEEc-cCCchhHHHh--
Q 017890 126 QVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAA------ALSADDFILP-QYREPGVLLW-- 196 (364)
Q Consensus 126 ~~s~e~l~~ly~~M~~~R~~D~~~~~~~rqGri~f~~~~~GqEa~~vg~a~------aL~~~D~v~~-~yR~~g~ll~-- 196 (364)
.+++++++++|+.|+++|.||+++.+.+..+++. +..|||++++|+.. +++++|+|++ .||+|+..|+
T Consensus 185 ~~s~e~~~~il~~m~~~r~fE~fl~~~f~~~Krf---~~eG~Ea~i~gl~~li~~a~~lg~~D~vigmaHRgrlnvLa~v 261 (924)
T PRK09404 185 SFSAEEKKAILERLTAAEGFERFLHTKFVGQKRF---SLEGGESLIPMLDEIIRRAGKLGVKEIVIGMAHRGRLNVLVNV 261 (924)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCcc---cccchhhHHHHHHHHHHHHHhCCCCCEEEecCcCchHHHHHHh
Confidence 7899999999999999999999999999888753 57999999999988 6668999999 6999999999
Q ss_pred cCCCHHHHHHHHhcCC--CCCCCCCCCccccCCCc-----cc-----ccccCCCcccchhHHHHHHHHhhhccCC-----
Q 017890 197 RGYTLQQFANQVFANK--ADDGKGRQMPIHYGSKK-----LN-----YITISSPIATQLPQAVGVAYSLKMEKKD----- 259 (364)
Q Consensus 197 rG~~~~~~l~~~~g~~--~~~~~Gr~mp~H~~~~~-----~~-----~~~~sg~LG~~lp~AvG~A~A~k~~~~~----- 259 (364)
+|++++++|++++|+. .+...++.+..|++... .+ ...+.|++|.+.|+|+|+|+|.|+++.+
T Consensus 262 ~G~~~~~ifaEf~Gk~~~~~~~~~GdvkyHlG~~~~~~g~gg~mhi~l~~npShleav~Pva~G~A~A~q~~~~~~~~~~ 341 (924)
T PRK09404 262 LGKPPRDLFAEFEGKHGPDEVLGSGDVKYHLGFSSDRETDGGEVHLSLAFNPSHLEIVNPVVEGSVRARQDRRGDGQDRK 341 (924)
T ss_pred cCCCHHHHHHHHcCCCCCCCCCCCCCcccccCccccccCCCCeeEeeccCCccccccccCeehhHHHHHHHhcCCccccc
Confidence 5999999999999986 33333455666665432 11 1234689999999999999999998777
Q ss_pred -CeEEEEeCCCcc-ccccHHHHHHHHHHcCCC---EEEEEEcCCcccccccccccCCccHHHHHhhcCeEEEEEeCCCHH
Q 017890 260 -ACAVAYTGDGGT-SEGDFHAALNFAAVMEAP---VVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGNDAL 334 (364)
Q Consensus 260 -~~vv~~~GDGa~-~eG~~~EALn~Aa~~~LP---vIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~~~~VDGnD~~ 334 (364)
.++||++|||++ ++|.|||+||+|+.|++| +||||+||+|+++|+..++.+...++++|++||+|+++|||+|++
T Consensus 342 ~~v~v~~~GDgA~agqG~v~EalNlA~l~~lp~ggvIfvveNNq~g~tT~~~~~~s~~~~sd~Ak~~giP~~~VDG~D~~ 421 (924)
T PRK09404 342 KVLPILIHGDAAFAGQGVVAETLNLSQLRGYRTGGTIHIVINNQIGFTTSPPDDRSTPYCTDVAKMVQAPIFHVNGDDPE 421 (924)
T ss_pred ceEEEEEecCccccCCChHHHHHHHHHhcCCCCCCEEEEEEeCCEEEeeCHHHhccchhHHHHHeecCCcEEEEcCCCHH
Confidence 799999999998 799999999999999997 999999999999999988877788999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCcEEEEEEeeccC
Q 017890 335 AVYTAVQAAREMAISEKRPVLVEVRLNFLW 364 (364)
Q Consensus 335 av~~a~~~A~~~ar~~~~P~LIea~T~R~~ 364 (364)
+|++|++.|++++|++++|+|||++|||+|
T Consensus 422 AV~~a~~~A~e~~r~g~gPvlIE~~tYR~~ 451 (924)
T PRK09404 422 AVVFATRLALEYRQKFKKDVVIDLVCYRRH 451 (924)
T ss_pred HHHHHHHHHHHHHHhcCcCEEEEEEEecCC
Confidence 999999999999999999999999999986
No 13
>TIGR00239 2oxo_dh_E1 2-oxoglutarate dehydrogenase, E1 component. The E1 ortholog from Corynebacterium glutamicum is unusual in having an N-terminal extension that resembles the dihydrolipoamide succinyltransferase (E2) component of 2-oxoglutarate dehydrogenase.
Probab=100.00 E-value=2.9e-37 Score=334.06 Aligned_cols=237 Identities=18% Similarity=0.130 Sum_probs=210.5
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccccccCCchhHHHHHHHhh------cCCCcEEEcc-CCchhHHH
Q 017890 124 FQQVSKEVAVKMYSHMVTLQVMDSVLYEAQR-QGRFSFYLTTIGEEAINIGSAAA------LSADDFILPQ-YREPGVLL 195 (364)
Q Consensus 124 ~~~~s~e~l~~ly~~M~~~R~~D~~~~~~~r-qGri~f~~~~~GqEa~~vg~a~a------L~~~D~v~~~-yR~~g~ll 195 (364)
...+++++.+++++.++.+..||+.+...+. |.|. +..|-|++..++-.. ...+|+|+++ ||++...|
T Consensus 183 ~~~~~~~~k~~il~~L~~ae~fE~fl~~kf~g~KRF----slEG~eslip~l~~~i~~~~~~gv~d~v~gmaHRGRlnvL 258 (929)
T TIGR00239 183 RAQFNSEEKKRFLSRLTAAEGFERFLGAKFPGAKRF----SLEGLDALVPMLKEIIRHSVNSGTRDVVLGMAHRGRLNVL 258 (929)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCcee----ecccHHHHHHHHHHHHHHHHHcCCCeEEeccccCCcHHHH
Confidence 4589999999999999999999999988774 6664 358999987766544 4578999998 99999999
Q ss_pred h--cCCCHHHHHHHHhcCCCCC-CCCCCCc-cccCC-----------CcccccccCCCcccchhHHHHHHHHhhhccC--
Q 017890 196 W--RGYTLQQFANQVFANKADD-GKGRQMP-IHYGS-----------KKLNYITISSPIATQLPQAVGVAYSLKMEKK-- 258 (364)
Q Consensus 196 ~--rG~~~~~~l~~~~g~~~~~-~~Gr~mp-~H~~~-----------~~~~~~~~sg~LG~~lp~AvG~A~A~k~~~~-- 258 (364)
+ +|++++++|+++.|+..+. +.|++.. .|++. ....+.++.|+|+.+.|+|+|.|+|.|+++.
T Consensus 259 ~nv~gkp~~~if~ef~g~~~~~~~~g~gdvKyHlg~~~~~~~~~~~~~~~~l~~npSHLeav~Pva~G~ArA~q~~~~~~ 338 (929)
T TIGR00239 259 VNVLGKPPEDIFSEFAGKHKSHLPDGTGDVKYHMGRFSSDFTTDGKLVHLALAFNPSHLEIVSPVVIGSTRARLDRLNDS 338 (929)
T ss_pred HHHhCCCHHHHHHHHcCCCCCcccCCCCCcCccCCCcccccccCCCcceeeecCCCcccccccchhhhHHHHHHHhcCCc
Confidence 9 9999999999999987653 3467665 88884 2345788899999999999999999998765
Q ss_pred ----CCeEEEEeCCCcc-ccccHHHHHHHHHHcCCCE---EEEEEcCCcccccccccccCCccHHHHHhhcCeEEEEEeC
Q 017890 259 ----DACAVAYTGDGGT-SEGDFHAALNFAAVMEAPV---VFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDG 330 (364)
Q Consensus 259 ----~~~vv~~~GDGa~-~eG~~~EALn~Aa~~~LPv---IfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~~~~VDG 330 (364)
+.++||++|||++ ++|.|||+||+|+.|++|+ ||||+||+|+++|+..++.+...++++|++||+|+++|||
T Consensus 339 ~~~~~~v~v~~~GDgA~agQG~v~EaLNlA~l~~lPvGGtIfvveNNqyg~tT~~~~~~s~~~~sd~Ak~ygiP~~~VDG 418 (929)
T TIGR00239 339 PESTKVLAILIHGDAAFAGQGVVQETLNMSKLRGYSVGGTIHIIINNQIGFTTNPLDARSTPYCSDLAKMIQAPIFHVNA 418 (929)
T ss_pred ccccceEEEEEeccccccCCChHHHHHHHHHhcCCCCCCEEEEEEeCCEEEEEcHHHhcCccCHHHHheecCCCEEEECC
Confidence 5799999999997 8999999999999999997 9999999999999887777777899999999999999999
Q ss_pred CCHHHHHHHHHHHHHHhhcCCCcEEEEEEeeccC
Q 017890 331 NDALAVYTAVQAAREMAISEKRPVLVEVRLNFLW 364 (364)
Q Consensus 331 nD~~av~~a~~~A~~~ar~~~~P~LIea~T~R~~ 364 (364)
+|+++|++|++.|++++|++++|+|||++|||+|
T Consensus 419 ~D~~AV~~a~~~Ave~~r~g~gPvlIE~~tYR~~ 452 (929)
T TIGR00239 419 DDPEAVAFATRLAVEYRNTFKRDVFIDLVGYRRH 452 (929)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCEEEEEEeccCC
Confidence 9999999999999999999999999999999986
No 14
>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=100.00 E-value=6.2e-33 Score=291.41 Aligned_cols=221 Identities=16% Similarity=0.197 Sum_probs=183.5
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc-ccccCCchhHHHHHHHhhcC---CCcEEE--ccCCchhHH
Q 017890 121 GSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFS-FYLTTIGEEAINIGSAAALS---ADDFIL--PQYREPGVL 194 (364)
Q Consensus 121 ~~~~~~~s~e~l~~ly~~M~~~R~~D~~~~~~~rqGri~-f~~~~~GqEa~~vg~a~aL~---~~D~v~--~~yR~~g~l 194 (364)
|.+...++.++|.++-.. +|.+ -++++++++ +++++.|+ +.++++.++. |+|+|+ +.||+|++.
T Consensus 9 p~d~~~l~~~~l~~l~~~---ir~~-----~~~~~~~~~Gh~~~~lg~--vel~~al~~~f~~~~D~ii~d~ghr~~~~~ 78 (581)
T PRK12315 9 PADLKKLSLDELEQLASE---IRTA-----LLEKDSAHGGHVGPNLGV--VELTIALHYVFNSPKDKIVWDVSHQSYPHK 78 (581)
T ss_pred HHHHhhCCHHHHHHHHHH---HHHH-----HHHHHHhcCCCcCcchhH--HHHHHHHHhhcCCCCCcEEEecCCchHHHH
Confidence 334556776666665442 4432 233445665 99999999 6666677777 899999 899999999
Q ss_pred HhcCCCHHHHHHHHhcCCCCCCCCCCCccccCCCcccccccCCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccc
Q 017890 195 LWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEG 274 (364)
Q Consensus 195 l~rG~~~~~~l~~~~g~~~~~~~Gr~mp~H~~~~~~~~~~~sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG 274 (364)
+.+|.+++.++.+++|+.+++.+++. +.|. + ...|+.|+++|+|+|+|+|.|+++.+.+|||++|||++++|
T Consensus 79 l~~G~~~~~~~~~~~g~~~G~~~~~~-s~~~------~-~~~g~~~~~ls~A~G~A~A~k~~~~~~~vv~~iGDG~~~eG 150 (581)
T PRK12315 79 MLTGRKEAFLDPDHYDDVTGYTNPEE-SEHD------F-FTVGHTSTSIALATGLAKARDLKGEKGNIIAVIGDGSLSGG 150 (581)
T ss_pred HHcCCccchhhHHHcCCCCCCCCCCC-CCCC------C-cCCCcHHHHHHHHHHHHHHHHhcCCCCeEEEEECchhhhcc
Confidence 99999999999999999988887766 2221 1 25688999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHcCCCEEEEEEcCCccccccccc---------ccCCccHHHHHhhcCeEEEEE-eCCCHHHHHHHHHHHH
Q 017890 275 DFHAALNFAAVMEAPVVFICRNNGWAISTNISE---------QFRSDGIVVKGRAYGIRSIRV-DGNDALAVYTAVQAAR 344 (364)
Q Consensus 275 ~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~---------~~~~~~ia~~a~a~G~~~~~V-DGnD~~av~~a~~~A~ 344 (364)
.+|||||+|+.|++|+||||+||+|++++++.. +....++.+++++|||++++| ||||++++++++++|+
T Consensus 151 ~~~EAln~A~~~k~~li~Ii~dN~~si~~~~~~~~~~l~~~~~~~~~~~~~~~~a~G~~~~~v~DG~D~~~l~~a~~~a~ 230 (581)
T PRK12315 151 LALEGLNNAAELKSNLIIIVNDNQMSIAENHGGLYKNLKELRDTNGQSENNLFKAMGLDYRYVEDGNDIESLIEAFKEVK 230 (581)
T ss_pred hHHHHHHHHHhhCCCEEEEEECCCCcCCCCCchhhhhhhhhhhcccccHHHHHHhcCCeEEEeeCCCCHHHHHHHHHHHH
Confidence 999999999999999999999999999988742 223446778999999999998 9999999999999876
Q ss_pred HHhhcCCCcEEEEEEeecc
Q 017890 345 EMAISEKRPVLVEVRLNFL 363 (364)
Q Consensus 345 ~~ar~~~~P~LIea~T~R~ 363 (364)
+ .++|++||++|+|-
T Consensus 231 ~----~~gP~~i~~~T~kG 245 (581)
T PRK12315 231 D----IDHPIVLHIHTLKG 245 (581)
T ss_pred h----CCCCEEEEEEeecC
Confidence 4 67999999999984
No 15
>COG3959 Transketolase, N-terminal subunit [Carbohydrate transport and metabolism]
Probab=100.00 E-value=7.7e-32 Score=248.70 Aligned_cols=218 Identities=18% Similarity=0.203 Sum_probs=178.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcccccccCCc-hhHHHHHHHhhcC---------CCcEEEccCCchh------HHH
Q 017890 132 AVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIG-EEAINIGSAAALS---------ADDFILPQYREPG------VLL 195 (364)
Q Consensus 132 l~~ly~~M~~~R~~D~~~~~~~rqGri~f~~~~~G-qEa~~vg~a~aL~---------~~D~v~~~yR~~g------~ll 195 (364)
..++-+....+|.-.-+|...+.+|.. ..+.. -|-+++.....|+ ..|+++.+ .+|+ +|.
T Consensus 7 ~~~L~~~A~~iRr~~v~m~~~~~~GH~---G~SLS~~eILa~LYf~~m~~~p~~p~~~~RDrfiLS-KGHaa~AlYa~La 82 (243)
T COG3959 7 VDELERIAREIRRNIVRMLANAGSGHV---GGSLSVVEILAVLYFKIMNIDPDDPKWPGRDRFILS-KGHAAPALYATLA 82 (243)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCCCc---CccchHHHHHHHHHHHHhccCCCCCCCCCCCeEEEe-cccchHHHHHHHH
Confidence 444555555677777666666666643 23332 2334444444432 24788876 4553 456
Q ss_pred hcCCCHHHHHHHHhcCCCCCCCCCCCccccCCCc-ccccccCCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccc
Q 017890 196 WRGYTLQQFANQVFANKADDGKGRQMPIHYGSKK-LNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEG 274 (364)
Q Consensus 196 ~rG~~~~~~l~~~~g~~~~~~~Gr~mp~H~~~~~-~~~~~~sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG 274 (364)
.+|+.+++.+..+.. .|+.+|+|+...+ +++..++|+||++|++|+|+|++.|+++.+..|++++|||+++||
T Consensus 83 e~G~~p~eeL~~~~~------~~srL~~Hp~~~~~pgve~stGSLGqGLsvavGmAlg~kl~~~~~~VyvilGDGEl~EG 156 (243)
T COG3959 83 EKGYFPEEELETFRR------IGSRLPGHPERNKTPGVEVSTGSLGQGLSVAVGMALGAKLKGSPYRVYVILGDGELDEG 156 (243)
T ss_pred HcCCCCHHHHHHhcc------CCCcCCCCCccCCCCceeecCCcccccchHHHHHHHHHhhcCCCceEEEEecCcccccc
Confidence 699988888887643 5889999999855 588889999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHcCC-CEEEEEEcCCcccccccccccCCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCc
Q 017890 275 DFHAALNFAAVMEA-PVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRP 353 (364)
Q Consensus 275 ~~~EALn~Aa~~~L-PvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P 353 (364)
++|||+.+|++++| ++|.||+-|+.|++..+++..+..++.+++++|||++++|||||++++++|+.++..- .++|
T Consensus 157 ~~WEAam~Aah~~L~NLiaivD~N~~QldG~t~~i~~~~pL~~k~eAFGw~V~evdG~d~~~i~~a~~~~~~~---~~rP 233 (243)
T COG3959 157 QVWEAAMTAAHYKLDNLIAIVDRNKLQLDGETEEIMPKEPLADKWEAFGWEVIEVDGHDIEEIVEALEKAKGS---KGRP 233 (243)
T ss_pred cHHHHHHHHHHhccCcEEEEEecCCcccCCchhhccCcchhHHHHHhcCceEEEEcCcCHHHHHHHHHhhhcc---CCCC
Confidence 99999999999999 9999999999999999999999999999999999999999999999999999887652 4499
Q ss_pred EEEEEEeec
Q 017890 354 VLVEVRLNF 362 (364)
Q Consensus 354 ~LIea~T~R 362 (364)
.+|.|.|.+
T Consensus 234 ~~IIa~Tvk 242 (243)
T COG3959 234 TVIIAKTVK 242 (243)
T ss_pred eEEEEeccc
Confidence 999999975
No 16
>PRK12754 transketolase; Reviewed
Probab=99.96 E-value=1.4e-27 Score=253.73 Aligned_cols=170 Identities=25% Similarity=0.372 Sum_probs=145.2
Q ss_pred cEEEccCCchhH------HHhcCC--CHHHHHHHHhcCCCCCCCCCCCccccCCC-cccccccCCCcccchhHHHHHHHH
Q 017890 182 DFILPQYREPGV------LLWRGY--TLQQFANQVFANKADDGKGRQMPIHYGSK-KLNYITISSPIATQLPQAVGVAYS 252 (364)
Q Consensus 182 D~v~~~yR~~g~------ll~rG~--~~~~~l~~~~g~~~~~~~Gr~mp~H~~~~-~~~~~~~sg~LG~~lp~AvG~A~A 252 (364)
|.++.+ .+|+. +...|+ +.++ |.+|.. .|+.+++|+... .+++...+|+||+|++.|+|+|+|
T Consensus 58 DRfvlS-~GH~~~~lYa~l~~~G~~~~~e~-L~~fr~------~gs~~~gHpe~~~~pgve~stG~LGqGl~~AvG~AlA 129 (663)
T PRK12754 58 DRFVLS-NGHGSMLIYSLLHLTGYDLPMEE-LKNFRQ------LHSKTPGHPEVGYTAGVETTTGPLGQGIANAVGMAIA 129 (663)
T ss_pred CeEEEe-CccHHHHHHHHHHHcCCCCCHHH-HHHhcc------CCCCCCCCCCCCCCCCccccCCcccchHHHHHHHHHH
Confidence 776655 34443 455786 5554 555542 477889999874 478888999999999999999999
Q ss_pred hhhcc----------CCCeEEEEeCCCccccccHHHHHHHHHHcCCC-EEEEEEcCCcccccccccccCCccHHHHHhhc
Q 017890 253 LKMEK----------KDACAVAYTGDGGTSEGDFHAALNFAAVMEAP-VVFICRNNGWAISTNISEQFRSDGIVVKGRAY 321 (364)
Q Consensus 253 ~k~~~----------~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LP-vIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~ 321 (364)
.|+.+ .+.+|+|++|||+++||.+|||+++|+.++|| +|+||+||+++|++++..+. .+++.+++++|
T Consensus 130 ~k~~~~~~~~~~~~~~~~~v~~~~GDGel~EG~~~EA~~~A~~~kL~nLi~ivD~N~~~idg~~~~~~-~~~~~~r~~a~ 208 (663)
T PRK12754 130 EKTLAAQFNRPGHDIVDHYTYAFMGDGCMMEGISHEVCSLAGTLKLGKLIAFYDDNGISIDGHVEGWF-TDDTAMRFEAY 208 (663)
T ss_pred HHHhhhccCcccccccCCEEEEEECcchhhchHHHHHHHHHHHhCCCCEEEEEEcCCCccCcchhhcc-CccHHHHHHhc
Confidence 99875 37899999999999999999999999999997 79999999999999999886 58999999999
Q ss_pred CeEEEE-EeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeecc
Q 017890 322 GIRSIR-VDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNFL 363 (364)
Q Consensus 322 G~~~~~-VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R~ 363 (364)
||++++ |||||+++|++|+++|++. .++|++|+++|++-
T Consensus 209 Gw~vi~vvDG~D~~ai~~A~~~a~~~---~~~Pt~I~~~T~~g 248 (663)
T PRK12754 209 GWHVIRGIDGHDADSIKRAVEEARAV---TDKPSLLMCKTIIG 248 (663)
T ss_pred CCeEEeeECCCCHHHHHHHHHHHHhc---CCCCEEEEEEeeec
Confidence 999999 8999999999999888752 57899999999974
No 17
>cd02007 TPP_DXS Thiamine pyrophosphate (TPP) family, DXS subfamily, TPP-binding module; 1-Deoxy-D-xylulose-5-phosphate synthase (DXS) is a regulatory enzyme of the mevalonate-independent pathway involved in terpenoid biosynthesis. Terpeniods are plant natural products with important pharmaceutical activity. DXS catalyzes a transketolase-type condensation of pyruvate with D-glyceraldehyde-3-phosphate to form 1-deoxy-D-xylulose-5-phosphate (DXP) and carbon dioxide. The formation of DXP leads to the formation of the terpene precursor IPP (isopentyl diphosphate) and to the formation of thiamine (vitamin B1) and pyridoxal (vitamin B6).
Probab=99.95 E-value=1.5e-27 Score=219.09 Aligned_cols=164 Identities=21% Similarity=0.221 Sum_probs=135.3
Q ss_pred CCcEEEcc--CCchhHHHhcCCCHHHHHHHHhcCCCCCCCCCCCccccCCCc-ccccccCCCcccchhHHHHHHHHhhhc
Q 017890 180 ADDFILPQ--YREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKK-LNYITISSPIATQLPQAVGVAYSLKME 256 (364)
Q Consensus 180 ~~D~v~~~--yR~~g~ll~rG~~~~~~l~~~~g~~~~~~~Gr~mp~H~~~~~-~~~~~~sg~LG~~lp~AvG~A~A~k~~ 256 (364)
+.|.++.+ |...+.+...|. ++.+.++.. .|+ ++.|+...+ +++...+|++|+++|+|+|+|+|.|++
T Consensus 24 ~rDr~ils~gH~~~~~~~~~g~--~~~l~~~~~------~~~-~~g~p~~~~~~~~~~~~G~lG~gl~~A~G~Ala~k~~ 94 (195)
T cd02007 24 PKDKIIWDVGHQAYPHKILTGR--RDQFHTLRQ------YGG-LSGFTKRSESEYDAFGTGHSSTSISAALGMAVARDLK 94 (195)
T ss_pred CCCeEEEecccHHHHHHHHHCC--HHHHhhhhc------CCC-CCCCCcCCCCCCceECCCchhhhHHHHHHHHHHHHHh
Confidence 46766665 333333444665 344555542 355 889987654 466778899999999999999999999
Q ss_pred cCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhcCeEEEE-EeCCCHHH
Q 017890 257 KKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIR-VDGNDALA 335 (364)
Q Consensus 257 ~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~~~~-VDGnD~~a 335 (364)
+.+++|+|++|||+++||.+||++++|+.+++|+|+||+||+|++++++. ++.++++++||.+.. |||||+++
T Consensus 95 ~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~~~li~vvdnN~~~~~~~~~------~~~~~~~a~G~~~~~~vdG~d~~~ 168 (195)
T cd02007 95 GKKRKVIAVIGDGALTGGMAFEALNNAGYLKSNMIVILNDNEMSISPNVG------TPGNLFEELGFRYIGPVDGHNIEA 168 (195)
T ss_pred CCCCeEEEEEcccccccChHHHHHHHHHHhCCCEEEEEECCCcccCCCCC------CHHHHHHhcCCCccceECCCCHHH
Confidence 99999999999999999999999999999988999999999999998765 477889999999996 99999999
Q ss_pred HHHHHHHHHHHhhcCCCcEEEEEEeec
Q 017890 336 VYTAVQAAREMAISEKRPVLVEVRLNF 362 (364)
Q Consensus 336 v~~a~~~A~~~ar~~~~P~LIea~T~R 362 (364)
+.+++++|++ .++|++|+++|++
T Consensus 169 l~~a~~~a~~----~~~P~~I~~~T~k 191 (195)
T cd02007 169 LIKVLKEVKD----LKGPVLLHVVTKK 191 (195)
T ss_pred HHHHHHHHHh----CCCCEEEEEEEec
Confidence 9999988764 5799999999975
No 18
>TIGR00232 tktlase_bact transketolase, bacterial and yeast. This model is designed to capture orthologs of bacterial transketolases. The group includes two from the yeast Saccharomyces cerevisiae but excludes dihydroxyactetone synthases (formaldehyde transketolases) from various yeasts and the even more distant mammalian transketolases. Among the family of thiamine diphosphate-dependent enzymes that includes transketolases, dihydroxyacetone synthases, pyruvate dehydrogenase E1-beta subunits, and deoxyxylulose-5-phosphate synthases, mammalian and bacterial transketolases seem not to be orthologous.
Probab=99.95 E-value=3.2e-27 Score=251.23 Aligned_cols=171 Identities=23% Similarity=0.332 Sum_probs=143.6
Q ss_pred cEEEccCCchh------HHHhcCCC-HHHHHHHHhcCCCCCCCCCCCccccCCC-cccccccCCCcccchhHHHHHHHHh
Q 017890 182 DFILPQYREPG------VLLWRGYT-LQQFANQVFANKADDGKGRQMPIHYGSK-KLNYITISSPIATQLPQAVGVAYSL 253 (364)
Q Consensus 182 D~v~~~yR~~g------~ll~rG~~-~~~~l~~~~g~~~~~~~Gr~mp~H~~~~-~~~~~~~sg~LG~~lp~AvG~A~A~ 253 (364)
|.++.+ .+|+ ++...|+. ..+-|.++.. .|+.+++||... .+++...+|+||+++++|+|+|+|.
T Consensus 54 DrfvlS-~GH~~~~lYa~l~~~G~~~~~e~L~~fr~------~~s~~~ghp~~~~~~gi~~~tG~lG~gl~~AvG~Ala~ 126 (653)
T TIGR00232 54 DRFVLS-NGHGSMLLYSLLHLTGYDLSIEDLKQFRQ------LHSKTPGHPEFGHTAGVEATTGPLGQGIANAVGMAIAQ 126 (653)
T ss_pred CeEEEE-CccHHHHHHHHHHHcCCCCCHHHHHhccc------CCCCCCCCCCCCCCCCeeeCCcchhccHHHHHHHHHHH
Confidence 765554 3443 35557963 4444556543 477889999873 4688888999999999999999999
Q ss_pred hhcc----------CCCeEEEEeCCCccccccHHHHHHHHHHcCCC-EEEEEEcCCcccccccccccCCccHHHHHhhcC
Q 017890 254 KMEK----------KDACAVAYTGDGGTSEGDFHAALNFAAVMEAP-VVFICRNNGWAISTNISEQFRSDGIVVKGRAYG 322 (364)
Q Consensus 254 k~~~----------~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LP-vIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G 322 (364)
|+.+ .+.+|+|++|||+++||.+|||+++|+.++|| +|+||+||+|+|++++.++. .+++++++++||
T Consensus 127 k~~~~~~~~~~~~~~~~~v~~~~GDG~l~EG~~~EA~~~A~~~~L~nLi~ivd~N~~~i~~~~~~~~-~~~~~~~~~a~G 205 (653)
T TIGR00232 127 KTLAATFNKPGFEIVDHYTYVFVGDGCLQEGISYEVASLAGHLKLGKLIVLYDSNRISIDGAVDGSF-TEDVAKRFEAYG 205 (653)
T ss_pred HHHhhhccCCccCCcCCEEEEEEccccccccHHHHHHHHHHHhCCCcEEEEEeCCCeeecccccccc-CccHHHHHHhcC
Confidence 9863 37789999999999999999999999999997 88999999999999998886 689999999999
Q ss_pred eEEEEE-eCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeecc
Q 017890 323 IRSIRV-DGNDALAVYTAVQAAREMAISEKRPVLVEVRLNFL 363 (364)
Q Consensus 323 ~~~~~V-DGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R~ 363 (364)
|++++| ||||++++++|+++|++ ..++|++|+++|+|-
T Consensus 206 w~~~~v~DG~D~~ai~~A~~~a~~---~~~~P~~I~~~T~~g 244 (653)
T TIGR00232 206 WEVLEVEDGHDLAAIDAAIEEAKA---SKDKPTLIEVTTTIG 244 (653)
T ss_pred CcEEEeCCCCCHHHHHHHHHHHHh---CCCCCEEEEEEeeec
Confidence 999999 99999999999987754 124899999999984
No 19
>cd02012 TPP_TK Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates. In heterotrophic organisms, TK provides a link between glycolysis and the pentose phosphate pathway and provides precursors for nucleotide, aromatic amino acid and vitamin biosynthesis. In addition, the enzyme plays a central role in the Calvin cycle in plants. Typically, TKs are homodimers. They require TPP and divalent cations, such as magnesium ions, for activity.
Probab=99.95 E-value=6.2e-27 Score=222.61 Aligned_cols=162 Identities=23% Similarity=0.283 Sum_probs=141.8
Q ss_pred HHHhcCCCHHHHHHHHhcCCCCCCCCCCCccccCCCcc-cccccCCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCcc
Q 017890 193 VLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKKL-NYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGT 271 (364)
Q Consensus 193 ~ll~rG~~~~~~l~~~~g~~~~~~~Gr~mp~H~~~~~~-~~~~~sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~ 271 (364)
++...|+..++.+..+.. .|+.++.|+....+ ++...+|+||+++|.|+|+|+|.|+.+++++|+|++|||++
T Consensus 66 ~l~~~g~~~~~~l~~~~~------~gs~l~gh~~~~~~~g~~~~~GslG~gl~~avG~Ala~~~~~~~~~v~~i~GDG~~ 139 (255)
T cd02012 66 VLALAGYLPEEDLKTFRQ------LGSRLPGHPEYGLTPGVEVTTGSLGQGLSVAVGMALAEKLLGFDYRVYVLLGDGEL 139 (255)
T ss_pred HHHHcCCCCHHHHHHhcc------cCCCCCCCCCCCCCCCeeeCCcchhhHHHHHHHHHHHHHHhCCCCEEEEEECcccc
Confidence 455678766666666542 46778999887554 77888899999999999999999999999999999999999
Q ss_pred ccccHHHHHHHHHHcCCC-EEEEEEcCCcccccccccccCCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcC
Q 017890 272 SEGDFHAALNFAAVMEAP-VVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISE 350 (364)
Q Consensus 272 ~eG~~~EALn~Aa~~~LP-vIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~ 350 (364)
+||.+||++++|+.++|| +|+|++||+|+++.++.......++++++++|||++++|||||++++++++++|++. .
T Consensus 140 ~~G~~~eal~~a~~~~l~~li~vvdnN~~~~~~~~~~~~~~~~~~~~~~a~G~~~~~v~G~d~~~l~~al~~a~~~---~ 216 (255)
T cd02012 140 QEGSVWEAASFAGHYKLDNLIAIVDSNRIQIDGPTDDILFTEDLAKKFEAFGWNVIEVDGHDVEEILAALEEAKKS---K 216 (255)
T ss_pred cccHHHHHHHHHHHcCCCcEEEEEECCCccccCcHhhccCchhHHHHHHHcCCeEEEECCCCHHHHHHHHHHHHHc---C
Confidence 999999999999999995 899999999999988777777789999999999999999999999999999988752 2
Q ss_pred CCcEEEEEEeecc
Q 017890 351 KRPVLVEVRLNFL 363 (364)
Q Consensus 351 ~~P~LIea~T~R~ 363 (364)
++|++|+++|.+-
T Consensus 217 ~~P~~I~~~t~kg 229 (255)
T cd02012 217 GKPTLIIAKTIKG 229 (255)
T ss_pred CCCEEEEEEeecc
Confidence 7899999999874
No 20
>PRK12753 transketolase; Reviewed
Probab=99.95 E-value=1.6e-26 Score=246.05 Aligned_cols=172 Identities=22% Similarity=0.275 Sum_probs=143.9
Q ss_pred CcEEEcc--CCc---hhHHHhcCC-CHHHHHHHHhcCCCCCCCCCCCccccCCC-cccccccCCCcccchhHHHHHHHHh
Q 017890 181 DDFILPQ--YRE---PGVLLWRGY-TLQQFANQVFANKADDGKGRQMPIHYGSK-KLNYITISSPIATQLPQAVGVAYSL 253 (364)
Q Consensus 181 ~D~v~~~--yR~---~g~ll~rG~-~~~~~l~~~~g~~~~~~~Gr~mp~H~~~~-~~~~~~~sg~LG~~lp~AvG~A~A~ 253 (364)
.|.++.+ |.. .+++...|+ ...+.|.+++. .|+.+++|+... .+++...+|++|++++.|+|+|+|.
T Consensus 57 rDrfvls~GH~~~~lYa~l~~~G~~~~~e~L~~fr~------~~s~~~ghp~~~~~pgve~~tG~lG~gl~~AvG~A~A~ 130 (663)
T PRK12753 57 RDRFILSNGHASMLLYSLLHLTGYDLPIEELKNFRQ------LHSKTPGHPEIGYTPGVETTTGPLGQGLANAVGLAIAE 130 (663)
T ss_pred CCcEEEecccHHHHHHHHHHHhCCCCCHHHHHHhcc------CCCCCCCCCCCCCCCCcccCCCcccccHHHHHHHHHHH
Confidence 3765554 333 234566785 34455666643 477789999764 4688889999999999999999999
Q ss_pred hhccC----------CCeEEEEeCCCccccccHHHHHHHHHHcCCC-EEEEEEcCCcccccccccccCCccHHHHHhhcC
Q 017890 254 KMEKK----------DACAVAYTGDGGTSEGDFHAALNFAAVMEAP-VVFICRNNGWAISTNISEQFRSDGIVVKGRAYG 322 (364)
Q Consensus 254 k~~~~----------~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LP-vIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G 322 (364)
|+.+. +.+|+|++|||+++||.+|||+++|+.++|| +|+||+||+++|++++.... .+++.+++++||
T Consensus 131 k~~~~~~~~~~~~~~~~~v~~~~GDGel~EG~~~EA~~~A~~~kL~nLi~ivd~N~~~i~~~~~~~~-~~~~~~~f~a~G 209 (663)
T PRK12753 131 RTLAAQFNRPGHEIVDHYTYVFMGDGCLMEGISHEVCSLAGTLGLGKLIGFYDHNGISIDGETEGWF-TDDTAKRFEAYH 209 (663)
T ss_pred HHhhhhcCCccccccCCEEEEEECcCccccHHHHHHHHHHHHHCCCCEEEEEECCCCcCCCChhhhc-ChhHHHHHHHcC
Confidence 98652 6899999999999999999999999999995 89999999999999998766 578999999999
Q ss_pred eEEEE-EeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q 017890 323 IRSIR-VDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNF 362 (364)
Q Consensus 323 ~~~~~-VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R 362 (364)
|+++. |||||+++|++|+++|.+ ..++|++|+++|++
T Consensus 210 w~~~~~vDGhD~~~i~~a~~~a~~---~~~~P~~I~~~T~k 247 (663)
T PRK12753 210 WHVIHEIDGHDPQAIKEAILEAQS---VKDKPSLIICRTII 247 (663)
T ss_pred CeEEceeCCCCHHHHHHHHHHHHH---CCCCeEEEEEEEee
Confidence 99995 999999999999998875 25789999999986
No 21
>PF00456 Transketolase_N: Transketolase, thiamine diphosphate binding domain; InterPro: IPR005474 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 3M49_B 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 3HYL_A 3RIM_A ....
Probab=99.95 E-value=5.9e-27 Score=231.02 Aligned_cols=171 Identities=27% Similarity=0.358 Sum_probs=135.0
Q ss_pred CcEEEccCCchh------HHHhcCC-CHHHHHHHHhcCCCCCCCCCCCccccCC-CcccccccCCCcccchhHHHHHHHH
Q 017890 181 DDFILPQYREPG------VLLWRGY-TLQQFANQVFANKADDGKGRQMPIHYGS-KKLNYITISSPIATQLPQAVGVAYS 252 (364)
Q Consensus 181 ~D~v~~~yR~~g------~ll~rG~-~~~~~l~~~~g~~~~~~~Gr~mp~H~~~-~~~~~~~~sg~LG~~lp~AvG~A~A 252 (364)
.|.++.+ .+|+ ++..+|+ ...+.|.++.. .|+.+++||.. ..+++...+||||++++.|+|+|+|
T Consensus 54 rDrfvlS-kGH~~~~lYa~l~~~G~~~~~~~L~~fr~------~~s~~~gHP~~~~~~gie~stGsLGqGl~~avG~Ala 126 (332)
T PF00456_consen 54 RDRFVLS-KGHASPALYAILALRGYDLSEEDLKTFRQ------LGSRLPGHPEYGKTPGIEASTGSLGQGLSIAVGMALA 126 (332)
T ss_dssp S-EEEES-SGGGHHHHHHHHHHTTSSS-HHHHTTTTS------TTSSSSSSTTTTTSTT-SS--SSTTHHHHHHHHHHHH
T ss_pred CCcEEEe-ccchhHHHHHHHHHhcCCCCHHHHHHhcc------CCCCCCCCCcccCCceeEeeccchhcchhhHHHHHHH
Confidence 4876666 4554 3444787 55566666552 58889999984 4578888999999999999999999
Q ss_pred hhhcc----------CCCeEEEEeCCCccccccHHHHHHHHHHcCC-CEEEEEEcCCcccccccccccCCccHHHHHhhc
Q 017890 253 LKMEK----------KDACAVAYTGDGGTSEGDFHAALNFAAVMEA-PVVFICRNNGWAISTNISEQFRSDGIVVKGRAY 321 (364)
Q Consensus 253 ~k~~~----------~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~L-PvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~ 321 (364)
.|+.+ -+.+|+|++|||+++||..|||+.+|+.++| ++|+|+++|+.++++++.... .+++.+++++|
T Consensus 127 ~k~~~~~~n~~~~~~~~~~vy~l~GDGel~EG~~~EA~~~A~~~~L~nLi~i~D~N~~q~dg~~~~~~-~~~~~~k~~a~ 205 (332)
T PF00456_consen 127 EKMLGARFNKPGFDIIDHRVYVLMGDGELQEGSVWEAASLAGHYKLDNLIVIYDSNGIQIDGPTDIVF-SEDIAKKFEAF 205 (332)
T ss_dssp HHHHHHHHHBTTBSTTT--EEEEEEHHHHHSHHHHHHHHHHHHTT-TTEEEEEEEESEETTEEGGGTH-HSHHHHHHHHT
T ss_pred HHHHHhhhcccccccccceEEEEecCccccchhhHHHHHHHHHhCCCCEEEEEecCCcccCCCccccc-chHHHHHHHHh
Confidence 98742 2578999999999999999999999999999 899999999999999987654 46899999999
Q ss_pred CeEEEEE-eCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q 017890 322 GIRSIRV-DGNDALAVYTAVQAAREMAISEKRPVLVEVRLNF 362 (364)
Q Consensus 322 G~~~~~V-DGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R 362 (364)
||.+++| ||||+++|++|+++|.. ..++|++|.++|..
T Consensus 206 Gw~v~~v~dGhd~~~i~~A~~~a~~---~~~kP~~Ii~~Tvk 244 (332)
T PF00456_consen 206 GWNVIEVCDGHDVEAIYAAIEEAKA---SKGKPTVIIARTVK 244 (332)
T ss_dssp T-EEEEEEETTBHHHHHHHHHHHHH---STSS-EEEEEEE-T
T ss_pred hhhhcccccCcHHHHHHHHHHHHHh---cCCCCceeecceEE
Confidence 9999998 99999999999999875 34799999999974
No 22
>PTZ00089 transketolase; Provisional
Probab=99.94 E-value=8.9e-26 Score=240.50 Aligned_cols=174 Identities=23% Similarity=0.299 Sum_probs=144.9
Q ss_pred CCcEEEcc--CCc---hhHHHhcCC-CHHHHHHHHhcCCCCCCCCCCCccccCCC-cccccccCCCcccchhHHHHHHHH
Q 017890 180 ADDFILPQ--YRE---PGVLLWRGY-TLQQFANQVFANKADDGKGRQMPIHYGSK-KLNYITISSPIATQLPQAVGVAYS 252 (364)
Q Consensus 180 ~~D~v~~~--yR~---~g~ll~rG~-~~~~~l~~~~g~~~~~~~Gr~mp~H~~~~-~~~~~~~sg~LG~~lp~AvG~A~A 252 (364)
+.|.++.+ |.. .+++...|+ ...+-+.++.. .|+.++.|+... .+++...+|++|++++.|+|+|+|
T Consensus 58 ~rDr~vls~GH~~~~lYa~l~l~G~~~~~~~l~~fr~------~~s~~~ghp~~~~~~gv~~~tG~lG~gls~AvG~A~a 131 (661)
T PTZ00089 58 NRDRFVLSNGHASALLYSMLHLTGYDLSMEDLKNFRQ------LGSRTPGHPERHITPGVEVTTGPLGQGIANAVGLAIA 131 (661)
T ss_pred CCCEEEEeCcchHHHHHHHHHHcCCCCCHHHHHhcCC------CCCCCCCCCCCCCCCCcccCCcchhhhHHHHHHHHHH
Confidence 34875554 444 344666785 44455666543 466778898764 367888899999999999999999
Q ss_pred hhhccC----------CCeEEEEeCCCccccccHHHHHHHHHHcCCC-EEEEEEcCCcccccccccccCCccHHHHHhhc
Q 017890 253 LKMEKK----------DACAVAYTGDGGTSEGDFHAALNFAAVMEAP-VVFICRNNGWAISTNISEQFRSDGIVVKGRAY 321 (364)
Q Consensus 253 ~k~~~~----------~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LP-vIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~ 321 (364)
.|+.+. +.+|+|++|||+++||.+|||+|+|+.++|| +|+||+||+++|++++..+. .+++.+++++|
T Consensus 132 ~k~~~~~~~~~~~~~~~~~v~~v~GDG~l~eG~~~EAl~~A~~~~L~nLi~i~d~N~~~i~~~~~~~~-~~~~~~~f~a~ 210 (661)
T PTZ00089 132 EKHLAAKFNRPGHPIFDNYVYVICGDGCLQEGVSQEALSLAGHLGLEKLIVLYDDNKITIDGNTDLSF-TEDVEKKYEAY 210 (661)
T ss_pred HHHHhhhccCccccCcCCEEEEEECccchhhHHHHHHHHHHHHhCCCCEEEEEECCCcccccCccccc-CccHHHHHHhc
Confidence 998653 7899999999999999999999999999995 89999999999999988654 57899999999
Q ss_pred CeEEEEE-eCC-CHHHHHHHHHHHHHHhhcCCCcEEEEEEeecc
Q 017890 322 GIRSIRV-DGN-DALAVYTAVQAAREMAISEKRPVLVEVRLNFL 363 (364)
Q Consensus 322 G~~~~~V-DGn-D~~av~~a~~~A~~~ar~~~~P~LIea~T~R~ 363 (364)
||+++.| ||| |++++++|+++|++. .++|++|+++|+|-
T Consensus 211 G~~~i~v~dG~~D~~~l~~a~~~a~~~---~~~P~~I~~~T~kG 251 (661)
T PTZ00089 211 GWHVIEVDNGNTDFDGLRKAIEEAKKS---KGKPKLIIVKTTIG 251 (661)
T ss_pred CCcEEEeCCCCCCHHHHHHHHHHHHhc---CCCcEEEEEEeeec
Confidence 9999999 999 999999999988763 36899999999974
No 23
>PLN02790 transketolase
Probab=99.94 E-value=1.3e-25 Score=238.98 Aligned_cols=174 Identities=21% Similarity=0.254 Sum_probs=144.3
Q ss_pred CCcEEEcc--CCc---hhHHHhcCC--CHHHHHHHHhcCCCCCCCCCCCccccCCC-cccccccCCCcccchhHHHHHHH
Q 017890 180 ADDFILPQ--YRE---PGVLLWRGY--TLQQFANQVFANKADDGKGRQMPIHYGSK-KLNYITISSPIATQLPQAVGVAY 251 (364)
Q Consensus 180 ~~D~v~~~--yR~---~g~ll~rG~--~~~~~l~~~~g~~~~~~~Gr~mp~H~~~~-~~~~~~~sg~LG~~lp~AvG~A~ 251 (364)
+.|.++.+ |-. .+++...|+ ...+-|..+.. .|+..|+|+... .+++...+|++|++++.|+|+|+
T Consensus 46 ~rDrfvls~GH~~~~lYa~l~~~G~~~~~~~~l~~~r~------~~s~~~ghp~~~~~pgi~~~tG~lG~gl~~A~G~A~ 119 (654)
T PLN02790 46 NRDRFVLSAGHGCMLQYALLHLAGYDSVQMEDLKQFRQ------WGSRTPGHPENFETPGIEVTTGPLGQGIANAVGLAL 119 (654)
T ss_pred CCCEEEEeCcchHHHHHHHHHHcCCCCCCHHHHHHhcc------CCCCCCCCCCCCCCCCccccCCchhchHHHHHHHHH
Confidence 45877764 444 344666887 23344556643 477788998764 37888899999999999999999
Q ss_pred Hhhh-----ccC-----CCeEEEEeCCCccccccHHHHHHHHHHcCCC-EEEEEEcCCcccccccccccCCccHHHHHhh
Q 017890 252 SLKM-----EKK-----DACAVAYTGDGGTSEGDFHAALNFAAVMEAP-VVFICRNNGWAISTNISEQFRSDGIVVKGRA 320 (364)
Q Consensus 252 A~k~-----~~~-----~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LP-vIfVV~NNg~ais~~~~~~~~~~~ia~~a~a 320 (364)
|.|+ +++ +.+|+|++|||+++||.+|||+|+|+.++|| +|+||+||+++|++++..+. .+++.+++++
T Consensus 120 A~k~~~~~~~~~~~~~~~~~v~~~~GDG~l~eG~~~EAl~~A~~~~L~nli~i~d~N~~~i~~~~~~~~-~~~~~~~f~a 198 (654)
T PLN02790 120 AEKHLAARFNKPDHKIVDHYTYCILGDGCQMEGISNEAASLAGHWGLGKLIVLYDDNHISIDGDTEIAF-TEDVDKRYEA 198 (654)
T ss_pred HHHHHHHHhCCCcccccCCEEEEEECcCcccchHHHHHHHHHHHhCCCCEEEEEecCCccccCCccccc-chhHHHHHHH
Confidence 9995 332 6899999999999999999999999999996 89999999999999988654 5789999999
Q ss_pred cCeEEEEEeC--CCHHHHHHHHHHHHHHhhcCCCcEEEEEEeecc
Q 017890 321 YGIRSIRVDG--NDALAVYTAVQAAREMAISEKRPVLVEVRLNFL 363 (364)
Q Consensus 321 ~G~~~~~VDG--nD~~av~~a~~~A~~~ar~~~~P~LIea~T~R~ 363 (364)
|||+++.||| ||++++++|+++|++. .++|++|+++|++-
T Consensus 199 ~G~~~~~vdgg~hd~~~l~~a~~~a~~~---~~~P~lI~~~T~kG 240 (654)
T PLN02790 199 LGWHTIWVKNGNTDYDEIRAAIKEAKAV---TDKPTLIKVTTTIG 240 (654)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHHhc---CCCeEEEEEEEeec
Confidence 9999999988 8999999999888752 57999999999873
No 24
>PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=99.94 E-value=1e-25 Score=236.93 Aligned_cols=234 Identities=20% Similarity=0.233 Sum_probs=170.3
Q ss_pred CeeEEecCCCCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccCCchhHHHHHHHhhcC-CCcEEE
Q 017890 107 PCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALS-ADDFIL 185 (364)
Q Consensus 107 ~~~rv~~~~g~~~~~~~~~~~s~e~l~~ly~~M~~~R~~D~~~~~~~rqGri~f~~~~~GqEa~~vg~a~aL~-~~D~v~ 185 (364)
|+|.+|+ ++-++.+..+++.+++.++-. -++...+|.. .. ..|.++- +.|-=-+.+..-..++ +.|.++
T Consensus 2 ~~~~~~~---~~~~~~~~~~~~~~~l~~~a~-~iR~~~~~~~--~~-~~gH~g~---~ls~~~i~~~L~~~~~~~rDr~i 71 (580)
T PRK05444 2 PKYPLLD---TINSPADLKKLSEEELPQLAD-EIREFLIDVV--SK-TGGHLGS---NLGVVELTVALHYVFDTPKDRII 71 (580)
T ss_pred CCCchhh---ccCCHHHHhcCCHHHHHHHHH-HHHHHHHHHH--Hh-cCCCcCC---CccHHHHHHHHHHhcCCCCccEE
Confidence 4455555 333455566888877766533 3444455543 22 3565543 3332222223333343 568766
Q ss_pred cc--CCchhHHHhcCCCHHHHHHHHhcCCCCCCCCCCCccccCCCc-ccccccCCCcccchhHHHHHHHHhhhc-cCCCe
Q 017890 186 PQ--YREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKK-LNYITISSPIATQLPQAVGVAYSLKME-KKDAC 261 (364)
Q Consensus 186 ~~--yR~~g~ll~rG~~~~~~l~~~~g~~~~~~~Gr~mp~H~~~~~-~~~~~~sg~LG~~lp~AvG~A~A~k~~-~~~~~ 261 (364)
.+ |...+++...|. . +.+..+.. .|+ +++|+...+ +++...+|++|+++|+|+|+|+|.|++ +++++
T Consensus 72 ls~GH~~y~~~~~~g~-~-~~l~~~~~------~~s-~~g~p~~~~~~~~~~~~G~lG~gl~~AvG~A~a~~~~~~~~~~ 142 (580)
T PRK05444 72 WDVGHQAYPHKILTGR-R-DRFDTLRQ------KGG-LSGFPKRSESEYDTFGAGHSSTSISAALGMAKARDLKGGEDRK 142 (580)
T ss_pred EeccHHHHHHHHHhCc-H-HHhcCccc------CCC-CCCCCCCCCCCCeeECCChHHHHHHHHHHHHHHHHhhCCCCCe
Confidence 65 333344555776 2 33444432 355 788988754 678888999999999999999999998 58899
Q ss_pred EEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccccccc---cCCccHHHHHhhcCeEEE-EEeCCCHHHHH
Q 017890 262 AVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQ---FRSDGIVVKGRAYGIRSI-RVDGNDALAVY 337 (364)
Q Consensus 262 vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~~---~~~~~ia~~a~a~G~~~~-~VDGnD~~av~ 337 (364)
|+|++|||+++||.+||++++|+.+++|+|+|++||+|++++++..+ ....++.+++++|||+++ .|||||+++++
T Consensus 143 v~~i~GDG~l~eG~~~Eal~~A~~~~~nli~IvdnN~~~i~~~~~~~~~~~~~~~~~~~~~a~G~~~~~~vdG~d~~~l~ 222 (580)
T PRK05444 143 VVAVIGDGALTGGMAFEALNNAGDLKSDLIVILNDNEMSISPNVGALSNYLARLRSSTLFEELGFNYIGPIDGHDLDALI 222 (580)
T ss_pred EEEEEcccccccCHHHHHHHHHHhhCCCEEEEEECCCCcCCCcchhhhhhhccccHHHHHHHcCCCeeeeeCCCCHHHHH
Confidence 99999999999999999999999999999999999999999887644 234667789999999999 58999999999
Q ss_pred HHHHHHHHHhhcCCCcEEEEEEeecc
Q 017890 338 TAVQAAREMAISEKRPVLVEVRLNFL 363 (364)
Q Consensus 338 ~a~~~A~~~ar~~~~P~LIea~T~R~ 363 (364)
++++++++ .++|++|++.|.+-
T Consensus 223 ~al~~a~~----~~~P~lI~~~T~kg 244 (580)
T PRK05444 223 ETLKNAKD----LKGPVLLHVVTKKG 244 (580)
T ss_pred HHHHHHHh----CCCCEEEEEEecCC
Confidence 99987764 57999999999873
No 25
>cd02017 TPP_E1_EcPDC_like Thiamine pyrophosphate (TPP) family, E1 of E. coli PDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the Escherichia coli pyruvate dehydrogenase multienzyme complex (PDC). PDC catalyzes the oxidative decarboxylation of pyruvate and the subsequent acetylation of coenzyme A to acetyl-CoA. The E1 component of PDC catalyzes the first step of the multistep process, using TPP and a divalent cation as cofactors. E. coli PDC is a homodimeric enzyme.
Probab=99.94 E-value=5.1e-25 Score=219.55 Aligned_cols=171 Identities=16% Similarity=0.115 Sum_probs=143.6
Q ss_pred CcEEEccCCchh------HHHhcCCCHHHHHHHHhcCCCCCCCCC--CCccccCCCc-c-cccccCCCcccchhHHHHHH
Q 017890 181 DDFILPQYREPG------VLLWRGYTLQQFANQVFANKADDGKGR--QMPIHYGSKK-L-NYITISSPIATQLPQAVGVA 250 (364)
Q Consensus 181 ~D~v~~~yR~~g------~ll~rG~~~~~~l~~~~g~~~~~~~Gr--~mp~H~~~~~-~-~~~~~sg~LG~~lp~AvG~A 250 (364)
.|.|+. .+|+ ++...|+.+.+-|..+.. .|+ .++.|+...+ + ++...+|+||+++++|+|+|
T Consensus 60 RDRvlS--kGHas~~lYA~L~l~G~~~~edL~~fr~------~gs~p~l~g~p~~~~~~~gve~sTGSLGqGLs~AvGmA 131 (386)
T cd02017 60 GDLVYF--QGHASPGIYARAFLEGRLTEEQLDNFRQ------EVGGGGLSSYPHPWLMPDFWEFPTVSMGLGPIQAIYQA 131 (386)
T ss_pred CCEEEe--CCcccHHHHHHHHHcCCCCHHHHHhhcc------CCCCCCCCCCCCCCCCCCCeeeCCchHHHHHHHHHHHH
Confidence 688664 4554 466689655556777653 344 5777775533 3 47888999999999999999
Q ss_pred HHhhh-------ccCCCeEEEEeCCCccccccHHHHHHHHHHcCC-CEEEEEEcCCcccccccccc-cCCccHHHHHhhc
Q 017890 251 YSLKM-------EKKDACAVAYTGDGGTSEGDFHAALNFAAVMEA-PVVFICRNNGWAISTNISEQ-FRSDGIVVKGRAY 321 (364)
Q Consensus 251 ~A~k~-------~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~L-PvIfVV~NNg~ais~~~~~~-~~~~~ia~~a~a~ 321 (364)
+|.|+ ++.+.+|+|++|||+++||.+|||+++|+.++| ++|+||++|+++++.++... ...+++.+++++|
T Consensus 132 la~r~l~a~~~~~~~~~rvyvllGDGEl~EG~vwEA~~~Ag~~kL~NLivIvD~N~~qidG~t~~v~~~~e~l~~kf~Af 211 (386)
T cd02017 132 RFNRYLEDRGLKDTSDQKVWAFLGDGEMDEPESLGAIGLAAREKLDNLIFVVNCNLQRLDGPVRGNGKIIQELEGIFRGA 211 (386)
T ss_pred HHHHHHHhhhccCCCCCeEEEEEcccccccHHHHHHHHHHHHhCCCCEEEEEECCCCccCCcccccccCchhHHHHHHhc
Confidence 99997 556789999999999999999999999999999 99999999999999999886 3668999999999
Q ss_pred CeEEEEEe---------------------------------------------------------------------CCC
Q 017890 322 GIRSIRVD---------------------------------------------------------------------GND 332 (364)
Q Consensus 322 G~~~~~VD---------------------------------------------------------------------GnD 332 (364)
||.+++|| |||
T Consensus 212 GW~vi~V~~g~~~~~~f~~~gg~~l~~~~~~~~~~~~~~l~~~~~~~~r~~l~~~~~~~~~~~~~~~d~~~~~~~~gGhD 291 (386)
T cd02017 212 GWNVIKVIWGSKWDELLAKDGGGALRQRMEETVDGDYQTLKAKDGAYVREHFFGKYPELKALVTDLSDEDLWALNRGGHD 291 (386)
T ss_pred CCEEEEEecCCcchhhhccCcchHHHHHHHhcccHHHHHHhhcchHHHHHHhccccHHHHHHhhcccHHhhhhhccCCCC
Confidence 99999998 999
Q ss_pred HHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q 017890 333 ALAVYTAVQAAREMAISEKRPVLVEVRLNF 362 (364)
Q Consensus 333 ~~av~~a~~~A~~~ar~~~~P~LIea~T~R 362 (364)
+.+|++|+.++.+. .++|++|.|.|..
T Consensus 292 ~~~i~~A~~~a~~~---~~kPt~Iia~Tik 318 (386)
T cd02017 292 PRKVYAAYKKAVEH---KGKPTVILAKTIK 318 (386)
T ss_pred HHHHHHHHHHHHhC---CCCCeEEEEeCee
Confidence 99999999988752 4689999999974
No 26
>TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP).
Probab=99.93 E-value=5.1e-25 Score=233.08 Aligned_cols=222 Identities=18% Similarity=0.244 Sum_probs=165.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccCCchhHHHHHHHhhcC-CCcEEEcc--CCchhHHHhc
Q 017890 121 GSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALS-ADDFILPQ--YREPGVLLWR 197 (364)
Q Consensus 121 ~~~~~~~s~e~l~~ly~~M~~~R~~D~~~~~~~rqGri~f~~~~~GqEa~~vg~a~aL~-~~D~v~~~--yR~~g~ll~r 197 (364)
|.+...++.+++.++-.. ++.+.++.. . ...|.+ .++.|-=-+.++....++ +.|.++.+ |...++++..
T Consensus 7 p~dl~~l~~~~l~~la~~-iR~~~i~~~--~-~~~GH~---g~~ls~vel~~aL~~~~~~~rDr~i~s~GH~~Y~~~~~~ 79 (617)
T TIGR00204 7 PQELRLLSIDELEKLCDE-LRRYLLESV--S-ASGGHL---ASGLGTVELTVALHYVFNTPKDQFIWDVGHQAYPHKLLT 79 (617)
T ss_pred HHHHhhCCHHHHHHHHHH-HHHHHHHHH--h-ccCCCc---CcchhHHHHHHHHHhhCCCCCCcEEEecchHHHHHHHHh
Confidence 344557777776665443 344444432 2 234443 345554444445555566 67877664 5555667778
Q ss_pred CCCHHHHHHHHhcCCCCCCCCCCCccccCCCccccc-ccCCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccH
Q 017890 198 GYTLQQFANQVFANKADDGKGRQMPIHYGSKKLNYI-TISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDF 276 (364)
Q Consensus 198 G~~~~~~l~~~~g~~~~~~~Gr~mp~H~~~~~~~~~-~~sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~ 276 (364)
|+ . +.|..+.. .|+ +++|+...+.++. ..+|++|+++++|+|+|+|.|+++.+.+|+|++|||+++||.+
T Consensus 80 G~-~-~~l~~~r~------~g~-l~g~p~~~e~~~d~~~~G~~g~~ls~a~G~A~a~~~~~~~~~v~~~~GDG~~~eG~~ 150 (617)
T TIGR00204 80 GR-R-EKFSTLRQ------KKG-LHGFPKRSESEYDVFSAGHSSTSISAGLGIAVAAEKKGADRKTVCVIGDGAITAGMA 150 (617)
T ss_pred Cc-H-HHhcchhh------cCC-cCCCCcCCCCCCCccCCCchHhHHHHHHHHHHHHHhhCCCCEEEEEECCcccccccH
Confidence 87 2 44555542 355 8899877666555 4789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCEEEEEEcCCcccccccccccC------------------------Cc---c-HHHH-----------
Q 017890 277 HAALNFAAVMEAPVVFICRNNGWAISTNISEQFR------------------------SD---G-IVVK----------- 317 (364)
Q Consensus 277 ~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~~~~------------------------~~---~-ia~~----------- 317 (364)
|||+|+|+.++||+|+||+||++++++++..+.. .+ + ++++
T Consensus 151 ~Ea~~~a~~~~l~~i~ii~~N~~~i~~~~~~~~~~l~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~ 230 (617)
T TIGR00204 151 FEALNHAGDLKTDMIVILNDNEMSISENVGALSNHLAQLRSGSLYQSLRDGLKKIFSKLPPIKNYLAKRTEESMKGLVVP 230 (617)
T ss_pred HHHHHHHHhcCCCEEEEEECCCcccCCCchHHHHHHHHhhccchHHHHHHHHHHHHhcCcchhHHHHHHHHHhhhhccCc
Confidence 9999999999999999999999999988753311 01 1 4444
Q ss_pred ---HhhcCeEEE-EEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q 017890 318 ---GRAYGIRSI-RVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNF 362 (364)
Q Consensus 318 ---a~a~G~~~~-~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R 362 (364)
+++|||.++ .|||||++++.++++.+++ .++|++|+++|.+
T Consensus 231 ~~~f~~~G~~~~~~vDGhd~~~l~~al~~ak~----~~~P~~i~~~T~K 275 (617)
T TIGR00204 231 GTFFEELGFNYIGPVDGHDLLELIETLKNAKK----LKGPVFLHIQTKK 275 (617)
T ss_pred cchHHHcCCcEEcccCCCCHHHHHHHHHHHhc----CCCCEEEEEEecC
Confidence 899999999 8999999999999987664 5789999999986
No 27
>PRK05899 transketolase; Reviewed
Probab=99.93 E-value=1.8e-24 Score=229.29 Aligned_cols=173 Identities=23% Similarity=0.269 Sum_probs=143.1
Q ss_pred CcEEEcc--CCc---hhHHHhcCC-CHHHHHHHHhcCCCCCCCCCCCccccCCCc-ccccccCCCcccchhHHHHHHHHh
Q 017890 181 DDFILPQ--YRE---PGVLLWRGY-TLQQFANQVFANKADDGKGRQMPIHYGSKK-LNYITISSPIATQLPQAVGVAYSL 253 (364)
Q Consensus 181 ~D~v~~~--yR~---~g~ll~rG~-~~~~~l~~~~g~~~~~~~Gr~mp~H~~~~~-~~~~~~sg~LG~~lp~AvG~A~A~ 253 (364)
.|.++.+ |-. .+++...|+ -.++-+..+.. .|..++.|+...+ +++...+|+||+++|.|+|+|+|.
T Consensus 61 ~Dr~i~s~GH~~~~~Ya~l~~~G~~~~~~~l~~~~~------~~~~~~~~p~~~~~~~~~~~~G~lG~gl~~AiG~Ala~ 134 (624)
T PRK05899 61 RDRFVLSAGHGSMLLYSLLHLAGYDLSIDDLKNFRQ------LGSKTPGHPEYGHTPGVETTTGPLGQGLANAVGMALAE 134 (624)
T ss_pred CCEEEEEChhHHHHHHHHHHHcCCCCCHHHHHHhcC------CCCCCCCCCCCCCCCCeeeCCcchhhhHHHHHHHHHHH
Confidence 4877654 333 234666897 44555555532 3556788887643 567778999999999999999999
Q ss_pred hhccC----------CCeEEEEeCCCccccccHHHHHHHHHHcCCC-EEEEEEcCCcccccccccccCCccHHHHHhhcC
Q 017890 254 KMEKK----------DACAVAYTGDGGTSEGDFHAALNFAAVMEAP-VVFICRNNGWAISTNISEQFRSDGIVVKGRAYG 322 (364)
Q Consensus 254 k~~~~----------~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LP-vIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G 322 (364)
++++. +++|+|++|||+++||.+|||+++|+.++|| +|+|++||+|++++++... ...++++++++||
T Consensus 135 ~~~~~~~~~~~~~~~~~~v~~v~GDG~~~~g~~~Eal~~A~~~~L~~li~v~dnN~~~~~~~~~~~-~~~~~~~~~~a~G 213 (624)
T PRK05899 135 KYLAALFNRPGLDIVDHYTYVLCGDGDLMEGISHEACSLAGHLKLGNLIVIYDDNRISIDGPTEGW-FTEDVKKRFEAYG 213 (624)
T ss_pred HHhhhhcCCccccCcCCeEEEEECcchhhchHHHHHHHHHHHhCCCCEEEEEECCCCccccccccc-ccccHHHHhccCC
Confidence 98776 7899999999999999999999999999996 8999999999999887743 3578999999999
Q ss_pred eEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeeccC
Q 017890 323 IRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNFLW 364 (364)
Q Consensus 323 ~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R~~ 364 (364)
|++++|||||++++.+++++|++ .++|++|+++|+|-+
T Consensus 214 ~~~~~VdG~d~~~l~~al~~a~~----~~~P~vI~v~t~kg~ 251 (624)
T PRK05899 214 WHVIEVDGHDVEAIDAAIEEAKA----STKPTLIIAKTIIGK 251 (624)
T ss_pred CeEEEECCCCHHHHHHHHHHHHh----cCCCEEEEEEeEecc
Confidence 99999999999999999998875 368999999998853
No 28
>cd02011 TPP_PK Thiamine pyrophosphate (TPP) family, Phosphoketolase (PK) subfamily, TPP-binding module; PK catalyzes the conversion of D-xylulose 5-phosphate and phosphate to acetyl phosphate, D-glyceraldehyde-3-phosphate and H2O. This enzyme requires divalent magnesium ions and TPP for activity.
Probab=99.93 E-value=2.7e-25 Score=208.09 Aligned_cols=166 Identities=20% Similarity=0.278 Sum_probs=143.8
Q ss_pred CchhHHHHHHHhhcCC-CcEEEccCCchhHHHhcCCCHHHHHHHHhcCCCCCCCCCCCccccCCCcccccccCCCcccch
Q 017890 165 IGEEAINIGSAAALSA-DDFILPQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQL 243 (364)
Q Consensus 165 ~GqEa~~vg~a~aL~~-~D~v~~~yR~~g~ll~rG~~~~~~l~~~~g~~~~~~~Gr~mp~H~~~~~~~~~~~sg~LG~~l 243 (364)
.||++.++.+..+|.. .|++|+.||... .| +++++.++. . .|. +++|+....+++...+|+||++|
T Consensus 2 ~GHg~~~l~a~l~l~G~~~~~~p~~~~~~----~g--l~~lf~qfs-~-----~gg-~psH~~~~tpGi~~~~G~LG~gL 68 (227)
T cd02011 2 PGHGGPAVLANLYLEGSYSEFYPEISQDE----EG--MRKLFKQFS-F-----PGG-IPSHAAPETPGSIHEGGELGYSL 68 (227)
T ss_pred CChHHHHHHHHHHhcCCCccccccccccH----HH--HHHHHHhcC-C-----CCC-CCCCCcccCCCeeecccchhhHH
Confidence 6999999999889987 599999999765 22 256777762 1 233 99999887789999999999999
Q ss_pred hHHHHHHHHhhhccCCCeEEEEeCCCccccccH---HHHHHHHHHcCC-CEEEEEEcCCcccccccccc-cCCccHHHHH
Q 017890 244 PQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDF---HAALNFAAVMEA-PVVFICRNNGWAISTNISEQ-FRSDGIVVKG 318 (364)
Q Consensus 244 p~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~---~EALn~Aa~~~L-PvIfVV~NNg~ais~~~~~~-~~~~~ia~~a 318 (364)
++|+|+|+ ++++.+|+|++|||++++|.+ |++.+++..+++ .|+.|++||+|+|++++... .+.+++++++
T Consensus 69 s~A~G~a~----d~~d~iv~~vvGDGE~eeG~lA~~W~a~~~~~~~~~~~vLpIld~Ng~~i~~pt~~~~~~~e~l~~~~ 144 (227)
T cd02011 69 SHAYGAVF----DNPDLIVACVVGDGEAETGPLATSWHSNKFLNPATDGAVLPILHLNGYKISNPTILARISHEELEALF 144 (227)
T ss_pred HHHHHhhh----cCCCcEEEEEECcCHHHHHhHHHHHHhhhhhcccccCCeEEEEEcCCCcccCCccccccCchhHHHHH
Confidence 99999974 578899999999999999996 898899999999 78999999999999999865 5578999999
Q ss_pred hhcCeEEEEEeCCCHHHHHHHHHHHHHHh
Q 017890 319 RAYGIRSIRVDGNDALAVYTAVQAAREMA 347 (364)
Q Consensus 319 ~a~G~~~~~VDGnD~~av~~a~~~A~~~a 347 (364)
++|||+++.|||||+++|++++++|+++|
T Consensus 145 ~~yG~~~~~VDG~D~~av~~~~a~a~~~~ 173 (227)
T cd02011 145 RGYGYEPYFVEGDDPETMHQAMAATLDWA 173 (227)
T ss_pred HhCCCceEEECCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999998887644
No 29
>TIGR00759 aceE pyruvate dehydrogenase E1 component, homodimeric type. WARNING: This family is classified as subfamily rather than equivalog because it includes a counterexample from Pseudomonas putida, MdeB, that is active as an E1 component of an alpha-ketoglutarate dehydrogenase complex rather than a pyruvate dehydrogase complex. The second pyruvate dehydrogenase complex E1 protein from Alcaligenes eutrophus, PdhE, complements an aceE mutant of E. coli but is not part of a pyruvate dehydrogenase complex operon, is more similar to the Pseudomonas putida MdeB than to E. coli AceE, and may have also have a different primary specificity.
Probab=99.91 E-value=3e-23 Score=222.55 Aligned_cols=223 Identities=17% Similarity=0.192 Sum_probs=167.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh----cCcccccccCCchhHHHHHHHhhcCC------CcEEEccCCchh------
Q 017890 129 KEVAVKMYSHMVTLQVMDSVLYEAQR----QGRFSFYLTTIGEEAINIGSAAALSA------DDFILPQYREPG------ 192 (364)
Q Consensus 129 ~e~l~~ly~~M~~~R~~D~~~~~~~r----qGri~f~~~~~GqEa~~vg~a~aL~~------~D~v~~~yR~~g------ 192 (364)
+.++.+..+..++-..++........ .|.++-++++ -|...++....|+. +|.|+.+ +|+
T Consensus 71 d~~~e~~i~~~iR~~ai~MV~~A~~~~~~vgGHigsslS~--adIl~vLy~~~lr~~~~~~~rD~VlSK--GHasp~lYA 146 (885)
T TIGR00759 71 DLELERRIRSIIRWNAIAMVLRANKKDLGLGGHISTYASA--ATLYEVGFNHFFRGHSEGGGGDLVFFQ--GHAAPGIYA 146 (885)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCcCCcHHH--HHHHHHHHHHhcCCCCCCCCCCEEEEC--CcHHHHHHH
Confidence 33455555555555565544222111 2444433333 23344444445653 6887774 443
Q ss_pred HHHhcCCCHHHHHHHHhcCCCCCCCCCCCccccCCCc-cc-ccccCCCcccchhHHHHHHHHhhh-------ccCCCeEE
Q 017890 193 VLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKK-LN-YITISSPIATQLPQAVGVAYSLKM-------EKKDACAV 263 (364)
Q Consensus 193 ~ll~rG~~~~~~l~~~~g~~~~~~~Gr~mp~H~~~~~-~~-~~~~sg~LG~~lp~AvG~A~A~k~-------~~~~~~vv 263 (364)
++...|+..++-|..|.. .. .|.+++.|+.... ++ +...+|+||.++++|+|.|++.|+ +..+.+|+
T Consensus 147 ~L~l~G~ls~e~L~~FRq-~~---~g~gL~shPhp~~~p~~ve~sTGSLG~Gls~AvG~Ala~Kyl~~rg~~~~~~~rVy 222 (885)
T TIGR00759 147 RAFLEGRLTEEQLDNFRQ-EV---QGDGLSSYPHPWLMPDFWQFPTVSMGLGPINAIYQARFMKYLENRGLKDTGDQKVW 222 (885)
T ss_pred HHHHcCCCCHHHHHHhcC-CC---CCCCCCCCCCcCcCCCCEEeCCCCccHHHHHHHHHHHHHHHHHhhccCCCCCceEE
Confidence 355589766777777653 21 2667888776533 44 778899999999999999999996 56778999
Q ss_pred EEeCCCccccccHHHHHHHHHHcCC-CEEEEEEcCCcccccccccccC-CccHHHHHhhcCeEEEEE-------------
Q 017890 264 AYTGDGGTSEGDFHAALNFAAVMEA-PVVFICRNNGWAISTNISEQFR-SDGIVVKGRAYGIRSIRV------------- 328 (364)
Q Consensus 264 ~~~GDGa~~eG~~~EALn~Aa~~~L-PvIfVV~NNg~ais~~~~~~~~-~~~ia~~a~a~G~~~~~V------------- 328 (364)
|++|||+++||..|||+.+|+.++| ++|+||++|+.++++++..... .+++.++++++||.+++|
T Consensus 223 vllGDGEldEG~swEA~~~Aa~~kLdNLi~IVD~N~~qlDG~v~~~~~i~e~le~~F~a~GW~Vi~V~wg~~wd~lf~~d 302 (885)
T TIGR00759 223 AFLGDGEMDEPESKGAITFAAREKLDNLTFVINCNLQRLDGPVRGNGKIIQELESLFRGAGWNVIKVLWGSEWDALLARD 302 (885)
T ss_pred EEEcchhhccHHHHHHHHHHHHhCCCCEEEEEeCCCCccCCccccccccchhHHHHHHhcCCEEEEEecCccchHhhcCC
Confidence 9999999999999999999999999 9999999999999999987644 578999999999999999
Q ss_pred --------------------------------------------------------eCCCHHHHHHHHHHHHHHhhcCCC
Q 017890 329 --------------------------------------------------------DGNDALAVYTAVQAAREMAISEKR 352 (364)
Q Consensus 329 --------------------------------------------------------DGnD~~av~~a~~~A~~~ar~~~~ 352 (364)
+|||+.+|++|+++|.+. .++
T Consensus 303 ~~g~L~~~m~~~~dg~yq~~~~~~Ga~~R~~ffg~~~~l~~lv~~~sD~~i~~l~rgGHD~~~I~~A~~~A~~~---~gr 379 (885)
T TIGR00759 303 TSGVLVKLMNETVDGDYQTYKAKDGAYVREHFFNRTPELKALVADMSDADIWALNRGGHDPRKVYAAYAAAQEH---KGQ 379 (885)
T ss_pred CccHHHHHHHhcccHHHHHHhhcchHHHHHHhccccHHHHHHhhccchhhhhhccCCCCCHHHHHHHHHHHHhC---CCC
Confidence 599999999999988763 458
Q ss_pred cEEEEEEeec
Q 017890 353 PVLVEVRLNF 362 (364)
Q Consensus 353 P~LIea~T~R 362 (364)
|++|.++|..
T Consensus 380 PTvIlA~TvK 389 (885)
T TIGR00759 380 PTVILAKTIK 389 (885)
T ss_pred CEEEEEeeee
Confidence 9999999975
No 30
>TIGR03186 AKGDH_not_PDH alpha-ketoglutarate dehydrogenase. Several bacterial species have a paralog to homodimeric form of the pyruvate dehydrogenase E1 component (see model TIGR00759), often encoded next to L-methionine gamma-lyase gene (mdeA). The member from a strain of Pseudomonas putida was shown to act on alpha-ketobutyrate, which is produced by MdeA.This model serves as an exception model to TIGR00759, as other proteins hitting TIGR00759 should be identified as the pyruvate dehydrogenase E1 component.
Probab=99.91 E-value=1.2e-22 Score=219.71 Aligned_cols=222 Identities=18% Similarity=0.184 Sum_probs=161.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh----cCcccccccCCchhHHHHHHHhhcCC------CcEEEccC-Cchh---HHHh
Q 017890 131 VAVKMYSHMVTLQVMDSVLYEAQR----QGRFSFYLTTIGEEAINIGSAAALSA------DDFILPQY-REPG---VLLW 196 (364)
Q Consensus 131 ~l~~ly~~M~~~R~~D~~~~~~~r----qGri~f~~~~~GqEa~~vg~a~aL~~------~D~v~~~y-R~~g---~ll~ 196 (364)
++.+-....++...++........ .|.++-++++ -|...+.....|+. +|.|+.+- -..+ ++..
T Consensus 73 ~~~~~~a~~iR~~a~~mv~~A~~~~~~~gGH~gs~lS~--a~i~~vLy~~~lr~~~~~~~rD~VlskGHasp~lYA~l~l 150 (889)
T TIGR03186 73 QLEERLAAILRWNALAMVVRANRAYGELGGHIASYASA--ADLFEVGFNHFFRAAGDASGGDLVYFQPHSAPGVYARAFL 150 (889)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCcCcHHH--HHHHHHHHHHhCCCCCCCCCCCEEEECCchHHHHHHHHHH
Confidence 344555555555666554222111 2444433333 33444455455663 68877763 2222 3445
Q ss_pred cCCCHHHHHHHHhcCCCCCCCCCCCcc--ccCCCcc-cccccCCCcccchhHHHHHHHHhhhc-------cCCCeEEEEe
Q 017890 197 RGYTLQQFANQVFANKADDGKGRQMPI--HYGSKKL-NYITISSPIATQLPQAVGVAYSLKME-------KKDACAVAYT 266 (364)
Q Consensus 197 rG~~~~~~l~~~~g~~~~~~~Gr~mp~--H~~~~~~-~~~~~sg~LG~~lp~AvG~A~A~k~~-------~~~~~vv~~~ 266 (364)
.|+..++-|.+|+... .|++++. |+.. .+ .+...+|+||.+++.|+|+|++.|+. ..+.+|+|++
T Consensus 151 ~G~l~~e~L~~fRq~~----~~~gl~~~phP~~-~p~~ve~sTGSLGqGl~~AvG~Ala~kyl~~r~~~~~~~~rVy~ll 225 (889)
T TIGR03186 151 EGFLSDAQLAHYRQEI----AGPGLCSYPHPWL-MPDFWQFPTGSMGIGPINAIYQARFMRYLQNRGLARTEGRKVWGFF 225 (889)
T ss_pred cCCCCHHHHHHhcCCC----CCCCCCCCCCccc-CCCCeEcCCCCchHHHHHHHHHHHHHHHHhhccccCCCCceEEEEE
Confidence 7976666677765321 1445555 4443 24 37778999999999999999998842 2368999999
Q ss_pred CCCccccccHHHHHHHHHHcCC-CEEEEEEcCCcccccccccccC-CccHHHHHhhcCeEEEEE----------------
Q 017890 267 GDGGTSEGDFHAALNFAAVMEA-PVVFICRNNGWAISTNISEQFR-SDGIVVKGRAYGIRSIRV---------------- 328 (364)
Q Consensus 267 GDGa~~eG~~~EALn~Aa~~~L-PvIfVV~NNg~ais~~~~~~~~-~~~ia~~a~a~G~~~~~V---------------- 328 (364)
|||+++||..|||+.+|+.++| ++|+||++|+.++++++..... .+++.+++++|||++++|
T Consensus 226 GDGEl~EG~~wEA~~~Aa~~kLdNLi~IvD~N~~qlDG~t~~~~~~~e~l~~kf~a~GW~vi~v~wG~~wd~l~~~d~~~ 305 (889)
T TIGR03186 226 GDGEMDEPESIGALSLAARERLDNLVFVINCNLQRLDGPVRGNGRIIDELESQFAGAGWNVIKVLWGSDWDALFARDATG 305 (889)
T ss_pred cchhhccHHHHHHHHHHHHhCCCCEEEEEeCCCCccCCccccccccchHHHHHHHhCCCEEEEEeecCchHHhhccccch
Confidence 9999999999999999999999 9999999999999999987444 578999999999999999
Q ss_pred -----------------------------------------------------eCCCHHHHHHHHHHHHHHhhcCCCcEE
Q 017890 329 -----------------------------------------------------DGNDALAVYTAVQAAREMAISEKRPVL 355 (364)
Q Consensus 329 -----------------------------------------------------DGnD~~av~~a~~~A~~~ar~~~~P~L 355 (364)
+|||+.+|++|+++|.+. .++|++
T Consensus 306 ~L~~~~~~~~dg~yq~~~~~~ga~~R~~ff~~~~~~~~lv~~~sD~~i~~l~rgGHD~~~i~~A~~~A~~~---~~~PTv 382 (889)
T TIGR03186 306 ALARAFAHTVDGQFQTFSANDGAYNRARFFGQDPALAALVAHLSDEDIDRLRRGGHDARKLYAAYDRAVRH---EGRPTV 382 (889)
T ss_pred HHHHHHHhcccHHHHHHhhcchHHHHHHhcCccHHHHHHhhcccHHhhhhhcCCCCCHHHHHHHHHHHHhC---CCCCEE
Confidence 699999999999998863 469999
Q ss_pred EEEEeec
Q 017890 356 VEVRLNF 362 (364)
Q Consensus 356 Iea~T~R 362 (364)
|.++|..
T Consensus 383 Ila~Tvk 389 (889)
T TIGR03186 383 ILAKTMK 389 (889)
T ss_pred EEEEeee
Confidence 9999974
No 31
>PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=99.91 E-value=5.1e-23 Score=218.73 Aligned_cols=234 Identities=20% Similarity=0.232 Sum_probs=163.8
Q ss_pred CeeEEecCCCCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccCCchhHHHHHHHhhcC-CCcEEE
Q 017890 107 PCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALS-ADDFIL 185 (364)
Q Consensus 107 ~~~rv~~~~g~~~~~~~~~~~s~e~l~~ly~~M~~~R~~D~~~~~~~rqGri~f~~~~~GqEa~~vg~a~aL~-~~D~v~ 185 (364)
|.|.+|+ ++-.|.+..+++.+++.++-.. ++.+.+|.... ..|.++ ++.|-=-+.++....++ |.|.++
T Consensus 4 ~~~~~l~---~i~~p~dl~~l~~~~l~~~a~~-iR~~ii~~~~~---~~GH~g---~~ls~vel~~aL~~~~~~prDr~i 73 (641)
T PRK12571 4 PKTPLLD---RIKGPADLRALSDAELEQLADE-LRAEVISAVSE---TGGHLG---SSLGVVELTVALHAVFNTPKDKLV 73 (641)
T ss_pred CCCChhh---hcCCHHHHHhCCHHHHHHHHHH-HHHHHHHHHHH---hCCCcC---CCchHHHHHHHHHHhcCCCCCcEE
Confidence 3344555 3444555668888777766333 44445554421 135543 44444334444444444 678776
Q ss_pred cc--CCchhHHHhcCCCHHHHHHHHhcCCCCCCCCCCCccccCCCcc-cccccCCCcccchhHHHHHHHHhhhccCCCeE
Q 017890 186 PQ--YREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKKL-NYITISSPIATQLPQAVGVAYSLKMEKKDACA 262 (364)
Q Consensus 186 ~~--yR~~g~ll~rG~~~~~~l~~~~g~~~~~~~Gr~mp~H~~~~~~-~~~~~sg~LG~~lp~AvG~A~A~k~~~~~~~v 262 (364)
.+ |-..++++..|. .+.|..++. .|+ ++.|+...+. +.....++-+++++.|+|+|+|.|+.++++.|
T Consensus 74 ~s~GH~~Y~~~~l~g~--~~~l~~~r~------~~~-l~g~p~~~e~~~~~~~~g~~~gslg~a~G~A~a~~~~~~~~~v 144 (641)
T PRK12571 74 WDVGHQCYPHKILTGR--RDRFRTLRQ------KGG-LSGFTKRSESEYDPFGAAHSSTSISAALGFAKARALGQPDGDV 144 (641)
T ss_pred EECchHHHHHHHHhCC--HHHHhhhhh------CCC-cCCCCCCCcCCCCCcccCCCcChHHHHHHHHHHHHHhCCCCeE
Confidence 64 444456666776 455556543 344 7778765442 21122344466789999999999999999999
Q ss_pred EEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccccc-------cccCCccH---------------------
Q 017890 263 VAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNIS-------EQFRSDGI--------------------- 314 (364)
Q Consensus 263 v~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~-------~~~~~~~i--------------------- 314 (364)
+|++|||++++|.+||++++|+.+++|+|+|++||++++++++. +.....++
T Consensus 145 ~~v~GDG~~~eG~~~Eal~~a~~~~~~li~I~dnN~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (641)
T PRK12571 145 VAVIGDGSLTAGMAYEALNNAGAADRRLIVILNDNEMSIAPPVGALAAYLSTLRSSDPFARLRAIAKGVEERLPGPLRDG 224 (641)
T ss_pred EEEEeCchhhcchHHHHHHHHHHhCCCEEEEEECCCeeecCCccHHHHHHHHHhcCcchHHHHHHHHHHHhhcchhHHHH
Confidence 99999999999999999999999999999999999999999875 21112111
Q ss_pred --------------HHHHhhcCeEEE-EEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q 017890 315 --------------VVKGRAYGIRSI-RVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNF 362 (364)
Q Consensus 315 --------------a~~a~a~G~~~~-~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R 362 (364)
.+++++|||.++ .|||||++++.+|++++.+. .++|++|+++|..
T Consensus 225 ~~~~~~~~~~~~~~~~~f~a~G~~~~~~vdGhd~~~l~~al~~ak~~---~~~P~~I~~~T~k 284 (641)
T PRK12571 225 ARRARELVTGMIGGGTLFEELGFTYVGPIDGHDMEALLSVLRAARAR---ADGPVLVHVVTEK 284 (641)
T ss_pred HHHHHHhhhhccchhhHHHHcCCEEECccCCCCHHHHHHHHHHHHhC---CCCCEEEEEEecC
Confidence 478999999999 79999999999999887752 3789999999964
No 32
>PLN02234 1-deoxy-D-xylulose-5-phosphate synthase
Probab=99.90 E-value=1.5e-22 Score=213.98 Aligned_cols=224 Identities=13% Similarity=0.136 Sum_probs=159.7
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccCCchhHHHHHHHhhcC-CCcEEEcc--CCchhHHHhc
Q 017890 121 GSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALS-ADDFILPQ--YREPGVLLWR 197 (364)
Q Consensus 121 ~~~~~~~s~e~l~~ly~~M~~~R~~D~~~~~~~rqGri~f~~~~~GqEa~~vg~a~aL~-~~D~v~~~--yR~~g~ll~r 197 (364)
|.+...++.++|.++-.. ++.+.++. ... ..|.+ .++.|-=-+.+++...++ |.|.++.. |-..++.+..
T Consensus 73 p~~~k~l~~~~L~~la~e-iR~~ii~~--~~~-~~GHl---gssLs~vEl~~aL~~vf~~p~DriI~s~GHqaya~~~lt 145 (641)
T PLN02234 73 PMHMKNLSIKELKVLSDE-LRSDVIFN--VSK-TGGHL---GSNLGVVELTVALHYIFNTPHDKILWDVGHQSYPHKILT 145 (641)
T ss_pred HHHHhhCCHHHHHHHHHH-HHHHHHHH--Hhh-cCCCc---cccchHHHHHHHHHHhcCCCCCeEEEecchhHHHHHHHH
Confidence 333456777777766443 22223332 221 24443 355655444455554554 78988775 4344444555
Q ss_pred CCCHHHHHHHHhcCCCCCCCCCCCccccCCCc-ccccccCCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccH
Q 017890 198 GYTLQQFANQVFANKADDGKGRQMPIHYGSKK-LNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDF 276 (364)
Q Consensus 198 G~~~~~~l~~~~g~~~~~~~Gr~mp~H~~~~~-~~~~~~sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~ 276 (364)
|.. +.|..++- .|+ +++|+...+ +++...+|++|++|++|+|+|+|.|+++.+..|||++|||+++||.+
T Consensus 146 gr~--~~l~t~r~------~gg-l~G~p~~~es~~d~~~tGslg~glS~a~GmA~a~~l~g~~~~v~~viGDGel~eG~~ 216 (641)
T PLN02234 146 GRR--GKMKTIRQ------TNG-LSGYTKRRESEHDSFGTGHSSTTLSAGLGMAVGRDLKGMNNSVVSVIGDGAMTAGQA 216 (641)
T ss_pred hhh--hhhccccc------CCC-cCCCCCCCCCCCcEECCCchHHHHHHHHHHHHHHHhCCCCCeEEEEEccchhhhHHH
Confidence 541 22334322 344 788987655 57778899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCEEEEEEcCCcc------cccccccccCC---------------ccHHHHHhhcCeEEE-EEeCCCHH
Q 017890 277 HAALNFAAVMEAPVVFICRNNGWA------ISTNISEQFRS---------------DGIVVKGRAYGIRSI-RVDGNDAL 334 (364)
Q Consensus 277 ~EALn~Aa~~~LPvIfVV~NNg~a------is~~~~~~~~~---------------~~ia~~a~a~G~~~~-~VDGnD~~ 334 (364)
|||+|.|+..+-++|+|+++|+.+ .+.++...... +++.+++++|||.++ .|||||++
T Consensus 217 wEAl~~a~~~~~nlivIlddN~~~~~~~~q~~g~~~~v~~l~~~l~~l~~~~~~~~~~~~~~fe~fG~~~~g~vDGHd~~ 296 (641)
T PLN02234 217 YEAMNNAGYLHSNMIVILNDNKQVSLPTANLDGPTQPVGALSCALSRLQSNCGMIRETSSTLFEELGFHYVGPVDGHNID 296 (641)
T ss_pred HHHHHHHhhhCCCEEEEEECCCCCcccccccCCCCCCcccHHHHHHHhhcccccccCCHHHHHHHcCCEEEeeECCCCHH
Confidence 999999997777999999999983 44444432211 356789999999999 99999999
Q ss_pred HHHHHHHHHHHHhhcCCCcEEEEEEeec
Q 017890 335 AVYTAVQAAREMAISEKRPVLVEVRLNF 362 (364)
Q Consensus 335 av~~a~~~A~~~ar~~~~P~LIea~T~R 362 (364)
++.++++++.+. +.++|++|.++|.+
T Consensus 297 ~l~~al~~~k~~--~~~~P~vI~~~T~K 322 (641)
T PLN02234 297 DLVSILETLKST--KTIGPVLIHVVTEK 322 (641)
T ss_pred HHHHHHHHHHhc--CCCCCEEEEEEEec
Confidence 999999887642 23589999999964
No 33
>PRK13012 2-oxoacid dehydrogenase subunit E1; Provisional
Probab=99.89 E-value=8.6e-22 Score=213.75 Aligned_cols=222 Identities=16% Similarity=0.175 Sum_probs=166.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc----CcccccccCCchhHHHHHHHhhcC------CCcEEEccCCchh------H
Q 017890 130 EVAVKMYSHMVTLQVMDSVLYEAQRQ----GRFSFYLTTIGEEAINIGSAAALS------ADDFILPQYREPG------V 193 (364)
Q Consensus 130 e~l~~ly~~M~~~R~~D~~~~~~~rq----Gri~f~~~~~GqEa~~vg~a~aL~------~~D~v~~~yR~~g------~ 193 (364)
.++.+-.+..++-..++......... |.++-++++ -+...++....|+ .+|.|+.+ +|+ .
T Consensus 86 ~~~e~~i~~~iR~~a~~mv~~A~~~~~~~GGH~~s~~S~--a~i~~vl~~~~~r~~~~~~~~D~V~sk--GHasp~lYA~ 161 (896)
T PRK13012 86 LALEERLAAIIRWNALAMVVRANRAYGELGGHIASYASA--ADLFEVGFNHFFRGRDDAGGGDLVYFQ--PHSAPGIYAR 161 (896)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCcccHHH--HHHHHHHHHhhcCCCCCCCCCCEEEEC--cchHHHHHHH
Confidence 34555455555556665443222111 444433333 2334445555566 56987775 443 2
Q ss_pred HHhcCCCHHHHHHHHhcCCCCCCCCCCCccccCCCc-cc-ccccCCCcccchhHHHHHHHHhh-------hccCCCeEEE
Q 017890 194 LLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKK-LN-YITISSPIATQLPQAVGVAYSLK-------MEKKDACAVA 264 (364)
Q Consensus 194 ll~rG~~~~~~l~~~~g~~~~~~~Gr~mp~H~~~~~-~~-~~~~sg~LG~~lp~AvG~A~A~k-------~~~~~~~vv~ 264 (364)
+...|+..++-|..|+. .. .|.+++.||.... ++ +...+|+||.++++|+|.|++.| .+..+++|+|
T Consensus 162 ~~l~G~l~~e~L~~fR~-~~---~~~gl~~~P~p~~~p~~~e~~TGSlG~G~~~ai~~A~~~ryl~~~g~~~~~~~~v~~ 237 (896)
T PRK13012 162 AFLEGRLSEEQLDHFRQ-EI---GGPGLSSYPHPWLMPDFWQFPTGSMGIGPINAIYQARFMRYLQHRGLKDTSGRKVWG 237 (896)
T ss_pred HHHcCCCCHHHHHHhcC-CC---CCCCCCCCCCcCCCCCCEecCCCCchHHHHHHHHHHHhcccccccccccCCCCeEEE
Confidence 44578656666777653 21 1566888876544 33 77789999999999999999998 3556789999
Q ss_pred EeCCCccccccHHHHHHHHHHcCC-CEEEEEEcCCcccccccccccC-CccHHHHHhhcCeEEEEE--------------
Q 017890 265 YTGDGGTSEGDFHAALNFAAVMEA-PVVFICRNNGWAISTNISEQFR-SDGIVVKGRAYGIRSIRV-------------- 328 (364)
Q Consensus 265 ~~GDGa~~eG~~~EALn~Aa~~~L-PvIfVV~NNg~ais~~~~~~~~-~~~ia~~a~a~G~~~~~V-------------- 328 (364)
++|||+++||..|||+.+|++++| ++||||++|..++++++..... ..++.++++++||.+++|
T Consensus 238 ~lGDGEl~Eg~~~eA~~~A~~~~LdNLi~ivD~N~~~lDG~v~~~~~~~~~l~~~f~a~GW~Vi~v~wg~~wd~l~~~d~ 317 (896)
T PRK13012 238 FFGDGEMDEPESIAALSLAAREGLDNLVFVINCNLQRLDGPVRGNGRIIQELEALFRGAGWNVIKVLWGSDWDALFARDT 317 (896)
T ss_pred EEchhhhccHHHHHHHHHHHHhCCCcEEEEEECCCccccCccccccccchHHHHHHHhCCCEEEEEecccchHHHhcCCC
Confidence 999999999999999999999999 9999999999999999887544 478999999999999999
Q ss_pred ------------e-------------------------------------------CCCHHHHHHHHHHHHHHhhcCCCc
Q 017890 329 ------------D-------------------------------------------GNDALAVYTAVQAAREMAISEKRP 353 (364)
Q Consensus 329 ------------D-------------------------------------------GnD~~av~~a~~~A~~~ar~~~~P 353 (364)
| |||+.+|++|+++|.+. .++|
T Consensus 318 ~~~l~~~~~~~~Dg~yq~~~~~~g~~~r~~ff~~~~~~~~lv~~~~d~~i~~l~rgGHD~~~i~~A~~~a~~~---~~~P 394 (896)
T PRK13012 318 TGALVRRFAETVDGQFQTFKANDGAYNREHFFGQDPELAALVAHLSDEDIDRLKRGGHDPRKVYAAYAAAVRH---KGQP 394 (896)
T ss_pred ccHHHHHHHhCCcHHHHHHhhcchHHHHHHhccccHHHHHHhhcccHHhhhhhcCCCCCHHHHHHHHHHHHhC---CCCC
Confidence 8 99999999999988763 4689
Q ss_pred EEEEEEeec
Q 017890 354 VLVEVRLNF 362 (364)
Q Consensus 354 ~LIea~T~R 362 (364)
++|.++|..
T Consensus 395 tvIla~Tvk 403 (896)
T PRK13012 395 TVILAKTKK 403 (896)
T ss_pred EEEEEEeee
Confidence 999999975
No 34
>COG0021 TktA Transketolase [Carbohydrate transport and metabolism]
Probab=99.89 E-value=8.1e-22 Score=204.41 Aligned_cols=169 Identities=25% Similarity=0.370 Sum_probs=141.1
Q ss_pred CcEEEccCCchhHHH------hcCC--CHHHHHHHHhcCCCCCCCCCCCccccCCC-cccccccCCCcccchhHHHHHHH
Q 017890 181 DDFILPQYREPGVLL------WRGY--TLQQFANQVFANKADDGKGRQMPIHYGSK-KLNYITISSPIATQLPQAVGVAY 251 (364)
Q Consensus 181 ~D~v~~~yR~~g~ll------~rG~--~~~~~l~~~~g~~~~~~~Gr~mp~H~~~~-~~~~~~~sg~LG~~lp~AvG~A~ 251 (364)
.|-++.+. +||-++ ..|+ ++++ |.+|+ +.|+.-|+||... ..++...+||||++++.|||+|+
T Consensus 59 RDRFVLSa-GHgSmllYsllhl~Gy~ls~ed-Lk~FR------Q~~SkTpGHPE~~~t~GVe~TTGPLGQGianAVGmAl 130 (663)
T COG0021 59 RDRFVLSA-GHGSMLLYSLLHLTGYDLSLED-LKNFR------QLGSKTPGHPEYGHTPGVEATTGPLGQGLANAVGMAL 130 (663)
T ss_pred CccEEecC-CchhHHHHHHHHHccCCCCHHH-HHhhc------cCCCCCCCCCCcCCCCCeEeccCccchhHHHHHHHHH
Confidence 47666552 555322 2465 5555 44554 2588899999854 46888899999999999999999
Q ss_pred Hhhhcc-----C-----CCeEEEEeCCCccccccHHHHHHHHHHcCC-CEEEEEEcCCcccccccccccCCccHHHHHhh
Q 017890 252 SLKMEK-----K-----DACAVAYTGDGGTSEGDFHAALNFAAVMEA-PVVFICRNNGWAISTNISEQFRSDGIVVKGRA 320 (364)
Q Consensus 252 A~k~~~-----~-----~~~vv~~~GDGa~~eG~~~EALn~Aa~~~L-PvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a 320 (364)
|.|... + |..++|++|||.++||..|||..+|++++| ++|++.++|..+|++.+...+ .+++.+|+++
T Consensus 131 Ae~~La~~fn~~g~~ivdh~tYvl~GDGclmEGvs~EA~slAG~l~L~kLIvlyD~N~IsiDG~~~~~f-~ed~~~RfeA 209 (663)
T COG0021 131 AEKHLAALFNRPGFDIVDHYTYVLVGDGCLMEGVSHEAASLAGHLKLGKLIVLYDSNDISIDGDTSLSF-TEDVAKRFEA 209 (663)
T ss_pred HHHHHHhhhCCCCCccccceEEEEecCchHhcccHHHHHHHHhhcCCCcEEEEEeCCCceeccCccccc-chhHHHHHHh
Confidence 988632 2 458999999999999999999999999999 899999999999999988877 6889999999
Q ss_pred cCeEEE-EEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEee
Q 017890 321 YGIRSI-RVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLN 361 (364)
Q Consensus 321 ~G~~~~-~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~ 361 (364)
|||+++ .+||||++++.+|+++|+. ..++|++|+|+|.
T Consensus 210 yGW~vi~~~DG~D~e~I~~Ai~~Ak~---~~dkPtlI~~kTi 248 (663)
T COG0021 210 YGWNVIRVIDGHDLEAIDKAIEEAKA---STDKPTLIIVKTI 248 (663)
T ss_pred cCCeEEEecCCCCHHHHHHHHHHHHh---cCCCCeEEEEEee
Confidence 999999 6799999999999999986 3779999999995
No 35
>PLN02582 1-deoxy-D-xylulose-5-phosphate synthase
Probab=99.88 E-value=1.2e-21 Score=208.60 Aligned_cols=224 Identities=15% Similarity=0.198 Sum_probs=156.6
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccCCchhHHHHHHHhhcC-CCcEEEcc--CCchhHHHhc
Q 017890 121 GSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALS-ADDFILPQ--YREPGVLLWR 197 (364)
Q Consensus 121 ~~~~~~~s~e~l~~ly~~M~~~R~~D~~~~~~~rqGri~f~~~~~GqEa~~vg~a~aL~-~~D~v~~~--yR~~g~ll~r 197 (364)
|.+...++.+++.++-.. ++-+.++.. . ...|.++ ++.|-=-+.++.-..++ |.|.++.. |-..++++..
T Consensus 40 p~dlk~l~~~~l~~la~~-iR~~ii~~~--~-~~~GH~g---~~Ls~vel~~aL~~~~~~p~Dr~i~s~GH~ay~~~~l~ 112 (677)
T PLN02582 40 PIHMKNLSVKELKQLADE-LRSDVIFNV--S-KTGGHLG---SSLGVVELTVALHYVFNAPQDKILWDVGHQSYPHKILT 112 (677)
T ss_pred HHHHhhCCHHHHHHHHHH-HHHHHHHHH--H-hcCCCcC---ccccHHHHHHHHHHhhCCCCCeEEEECcchHHHHHHHH
Confidence 444567888887766443 222333332 2 1234443 45554434444444454 78988874 4445566666
Q ss_pred CCCHHHHHHHHhcCCCCCCCCCCCccccCCCc-ccccccCCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccH
Q 017890 198 GYTLQQFANQVFANKADDGKGRQMPIHYGSKK-LNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDF 276 (364)
Q Consensus 198 G~~~~~~l~~~~g~~~~~~~Gr~mp~H~~~~~-~~~~~~sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~ 276 (364)
|. .+.|..+.. .|+ +++|+...+ ++....+|++|++++.|+|+|+|.|+++.+++|||++|||++++|.+
T Consensus 113 gr--~~~l~~~r~------~g~-l~g~p~~~e~~~~~~~~G~~g~~ls~a~G~A~a~~~~~~~~~v~~viGDG~~~~G~~ 183 (677)
T PLN02582 113 GR--RDKMHTMRQ------TNG-LSGFTKRAESEYDCFGTGHSSTTISAGLGMAVGRDLKGKKNNVVAVIGDGAMTAGQA 183 (677)
T ss_pred cc--HHHhccccc------CCC-cCCCCCCCCCCCceeccchhhhhHHHHHHHHHHHHhcCCCCEEEEEecccccchhhH
Confidence 76 233444432 354 888987655 56777899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCEEEEEEcCCc-cc--------ccccccc------------c--------------C--CccHH----
Q 017890 277 HAALNFAAVMEAPVVFICRNNGW-AI--------STNISEQ------------F--------------R--SDGIV---- 315 (364)
Q Consensus 277 ~EALn~Aa~~~LPvIfVV~NNg~-ai--------s~~~~~~------------~--------------~--~~~ia---- 315 (364)
|||+|+|+.+++|+|+||+||+. +| +..+... + + ...+.
T Consensus 184 ~Ealn~a~~~~~~li~iv~~N~~~s~~~~~~~s~~~~vg~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (677)
T PLN02582 184 YEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPAPPVGALSSALSRLQSSRPLRELREVAKGVTKQIGGPMHELAAKVD 263 (677)
T ss_pred HHHHHHHHhhCcCEEEEEECCCCccccccccCCCCCCccHHHHHHHHHhcchhHHHHHHHHHHHHHhCcHhHHHHHHHHH
Confidence 99999999999999999999996 22 1111000 0 0 01111
Q ss_pred ------------HHHhhcCeEEE-EEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q 017890 316 ------------VKGRAYGIRSI-RVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNF 362 (364)
Q Consensus 316 ------------~~a~a~G~~~~-~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R 362 (364)
..+++|||.++ .|||||++++.++++++++. ..++|++|+++|.+
T Consensus 264 ~~~k~~~~~~~~~~fe~~G~~y~g~iDGHd~~~L~~al~~~k~~--~~~~P~vihv~T~K 321 (677)
T PLN02582 264 EYARGMISGSGSTLFEELGLYYIGPVDGHNIDDLVTILREVKST--KTTGPVLIHVVTEK 321 (677)
T ss_pred HHhhhccCccccchHHHcCCeEEeeeCCCCHHHHHHHHHHHHhc--CCCCCEEEEEEecC
Confidence 23789999977 89999999999999988763 11689999999964
No 36
>PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed
Probab=99.88 E-value=1.7e-21 Score=208.76 Aligned_cols=256 Identities=16% Similarity=0.174 Sum_probs=205.4
Q ss_pred CCCeeEEecCCCCc-cc---CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcccccccCCchhHHHHHHHhhcC
Q 017890 105 RVPCFRVLDDNGEL-IK---GSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQ-RQGRFSFYLTTIGEEAINIGSAAALS 179 (364)
Q Consensus 105 ~~~~~rv~~~~g~~-~~---~~~~~~~s~e~l~~ly~~M~~~R~~D~~~~~~~-rqGri~f~~~~~GqEa~~vg~a~aL~ 179 (364)
.++.-.|.|++=+. +. +....+.+.++.+.+++++.....||.++...+ .|.|.| ..|-|.+...+-..|+
T Consensus 464 g~EymhI~dpeqr~W~Q~rvE~~~~kp~~~eq~~iL~~LnaaEaFEtFLqtkyvGqkRFs----lEG~Es~iplld~~~~ 539 (1228)
T PRK12270 464 GIEYMHIQDPEQRRWLQERVERPHEKPTREEQKRILSKLNAAEAFETFLQTKYVGQKRFS----LEGGESLIPLLDAVLD 539 (1228)
T ss_pred eeeeeecCCHHHHHHHHHHhhCCCCCCCHHHHHHHHHHhhhHHHHHHHHhhhcccceeee----ecchhhHHHHHHHHHH
Confidence 34556666665332 11 123568999999999999999999999987766 577744 5888887665544443
Q ss_pred ------CCcEEEc-cCCchhHHHh--cCCCHHHHHHHHhcCCCCC-CCCCC-CccccCCCc-----------ccccccCC
Q 017890 180 ------ADDFILP-QYREPGVLLW--RGYTLQQFANQVFANKADD-GKGRQ-MPIHYGSKK-----------LNYITISS 237 (364)
Q Consensus 180 ------~~D~v~~-~yR~~g~ll~--rG~~~~~~l~~~~g~~~~~-~~Gr~-mp~H~~~~~-----------~~~~~~sg 237 (364)
-+.++++ .||++...|+ .|.+..+++.+|-||.+.. ..|++ ...|.+... ..+..+.|
T Consensus 540 ~aa~~~l~evvigm~HRGRLNVLani~gK~y~qiF~EFegn~dp~~~~GsGDVKYHlG~eG~~~~~~g~~~~v~laaNPS 619 (1228)
T PRK12270 540 QAAEHGLDEVVIGMAHRGRLNVLANIVGKPYSQIFREFEGNLDPRSAQGSGDVKYHLGAEGTFTQMFGDEIKVSLAANPS 619 (1228)
T ss_pred HHHhcCCceEEecccccchHHHHHHHhcCCHHHHHHHhcCCCCccccCcCcceeeeccCceeeeccCCCeeEEEEecCch
Confidence 3568888 5999987777 5999999999999987643 24543 667776421 12345568
Q ss_pred CcccchhHHHHHHHHhhhc---c---CCCeEEEEeCCCcc-ccccHHHHHHHHHHcCCC---EEEEEEcCCccccccccc
Q 017890 238 PIATQLPQAVGVAYSLKME---K---KDACAVAYTGDGGT-SEGDFHAALNFAAVMEAP---VVFICRNNGWAISTNISE 307 (364)
Q Consensus 238 ~LG~~lp~AvG~A~A~k~~---~---~~~~vv~~~GDGa~-~eG~~~EALn~Aa~~~LP---vIfVV~NNg~ais~~~~~ 307 (364)
+|-.--|+.-|++.|.+.. + -....|++.||++| .+|.++|.||+|..+++| +|+||.||+++++|....
T Consensus 620 HLEavdpVleGivRakQd~l~~g~~~~~vlpi~~hGdaafagQGvV~Etlnla~l~~y~tGGtIhvivNNqiGftT~p~~ 699 (1228)
T PRK12270 620 HLEAVDPVLEGIVRAKQDRLDKGEEGFTVLPILLHGDAAFAGQGVVAETLNLSQLRGYRTGGTIHIVVNNQVGFTTAPES 699 (1228)
T ss_pred hhhhcchHhhhhhhhhhhhhcccccCCceeEEEEeccccccCCchHHHHHHHHhccCCCCCCeEEEEEecCcccccCccc
Confidence 9999999999999997642 1 24578999999996 899999999999999998 899999999999998776
Q ss_pred ccCCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeeccC
Q 017890 308 QFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNFLW 364 (364)
Q Consensus 308 ~~~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R~~ 364 (364)
..+.....+.++++++|++.|||+|++++.++.+.|+++++++++|++||++|||.+
T Consensus 700 ~Rss~y~td~ak~~~~PifhVNGdDpeAv~~va~lA~~yr~~f~~dVvIdlvcYRrr 756 (1228)
T PRK12270 700 SRSSEYATDVAKMIQAPIFHVNGDDPEAVVRVARLAFEYRQRFHKDVVIDLVCYRRR 756 (1228)
T ss_pred cccchhhHHHHhhcCCCEEeECCCCHHHHHHHHHHHHHHHHHcCCCeEEEEEEEeec
Confidence 666667778999999999999999999999999999999999999999999999975
No 37
>PRK09405 aceE pyruvate dehydrogenase subunit E1; Reviewed
Probab=99.88 E-value=2.6e-21 Score=209.49 Aligned_cols=223 Identities=17% Similarity=0.180 Sum_probs=169.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc----CcccccccCCchhHHHHHHHhhcCC------CcEEEccCCchh------
Q 017890 129 KEVAVKMYSHMVTLQVMDSVLYEAQRQ----GRFSFYLTTIGEEAINIGSAAALSA------DDFILPQYREPG------ 192 (364)
Q Consensus 129 ~e~l~~ly~~M~~~R~~D~~~~~~~rq----Gri~f~~~~~GqEa~~vg~a~aL~~------~D~v~~~yR~~g------ 192 (364)
+.++.+.....++...++........- |.++-++++ -+...++....|+. +|.|+.+ +|+
T Consensus 77 ~~~~e~~i~~~iR~~a~~mv~~An~~~~~~GGH~~s~~S~--a~i~~vl~~~~~r~~~~~~~~D~V~sk--GHasp~lYA 152 (891)
T PRK09405 77 DLELERRIRSYIRWNAAAMVLRANKKDLGLGGHISSFASS--ATLYEVGFNHFFRAPNEPHGGDLVFFQ--GHASPGIYA 152 (891)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCcccChHHH--HHHHHHHHHhhCCCCCCCCCCCEEEEC--chHHHHHHH
Confidence 445666667777777776554332211 444433332 33344555556664 6888865 443
Q ss_pred HHHhcCCCHHHHHHHHhcCCCCCCCCCCCccccCCCc-cc-ccccCCCcccchhHHHHHHHHhhh-------ccCCCeEE
Q 017890 193 VLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKK-LN-YITISSPIATQLPQAVGVAYSLKM-------EKKDACAV 263 (364)
Q Consensus 193 ~ll~rG~~~~~~l~~~~g~~~~~~~Gr~mp~H~~~~~-~~-~~~~sg~LG~~lp~AvG~A~A~k~-------~~~~~~vv 263 (364)
.+...|+..++-|..|+. . ..|.++++||.... ++ +.+.+++||.+++.|+|.|++.|+ ++.+++|+
T Consensus 153 ~~~l~G~l~~e~L~~fR~-~---~~g~gl~syPhp~~~p~~~~~~tgS~G~G~~~a~~~A~~~kyl~~~~~~~~~~~rv~ 228 (891)
T PRK09405 153 RAFLEGRLTEEQLDNFRQ-E---VDGKGLSSYPHPWLMPDFWQFPTVSMGLGPIMAIYQARFLKYLENRGLKDTSDQKVW 228 (891)
T ss_pred HHHHcCCCCHHHHHHhcC-C---CCCCCCCCCCCcCCCCCCeecCccccchhHHHHHHHHHhCccccccccccCCCceEE
Confidence 344578666666777653 2 23667888776543 33 567789999999999999999993 55678999
Q ss_pred EEeCCCccccccHHHHHHHHHHcCC-CEEEEEEcCCcccccccccccC-CccHHHHHhhcCeEEEEE-------------
Q 017890 264 AYTGDGGTSEGDFHAALNFAAVMEA-PVVFICRNNGWAISTNISEQFR-SDGIVVKGRAYGIRSIRV------------- 328 (364)
Q Consensus 264 ~~~GDGa~~eG~~~EALn~Aa~~~L-PvIfVV~NNg~ais~~~~~~~~-~~~ia~~a~a~G~~~~~V------------- 328 (364)
|++|||+++||..|||+.+|++++| ++||||++|..++++++..... .+++.++++++||.+++|
T Consensus 229 ~~~GDGEldEg~~~EA~~~A~~~~LdNLi~ivD~N~q~lDG~v~~~~~~~~~l~~~f~a~GW~Vi~v~wG~~wd~l~~~d 308 (891)
T PRK09405 229 AFLGDGEMDEPESLGAISLAAREKLDNLIFVINCNLQRLDGPVRGNGKIIQELEGIFRGAGWNVIKVIWGSRWDPLLAKD 308 (891)
T ss_pred EEEcchhhccHHHHHHHHHHHHhCCCCEEEEEECCCcccCCccccccccchhHHHHHhhCCCEEEEEeccccchhhhccC
Confidence 9999999999999999999999999 9999999999999999886433 578999999999999999
Q ss_pred -------------e-------------------------------------------CCCHHHHHHHHHHHHHHhhcCCC
Q 017890 329 -------------D-------------------------------------------GNDALAVYTAVQAAREMAISEKR 352 (364)
Q Consensus 329 -------------D-------------------------------------------GnD~~av~~a~~~A~~~ar~~~~ 352 (364)
| |||+.+|++|+++|.+. .++
T Consensus 309 ~~g~L~~~~~~~~Dg~yq~~~~~~ga~~R~~ffg~~~~~~~lv~~~sD~~i~~l~~gGHD~~~i~~A~~~A~~~---~~~ 385 (891)
T PRK09405 309 TSGKLVQLMNETVDGDYQTYKAKDGAYVREHFFGKYPETKALVADMSDDDIWALNRGGHDPRKVYAAYKAAVEH---KGQ 385 (891)
T ss_pred CccHHHHHHHhCCcHHHHHHHhcccHHHHHHhcCCCHHHHHHHhhCCHHHHHHhccCCCCHHHHHHHHHHHHhC---CCC
Confidence 4 99999999999988863 478
Q ss_pred cEEEEEEeec
Q 017890 353 PVLVEVRLNF 362 (364)
Q Consensus 353 P~LIea~T~R 362 (364)
|++|.++|..
T Consensus 386 PtvIia~Tvk 395 (891)
T PRK09405 386 PTVILAKTIK 395 (891)
T ss_pred CEEEEEecee
Confidence 9999999975
No 38
>KOG0523 consensus Transketolase [Carbohydrate transport and metabolism]
Probab=99.87 E-value=6.4e-21 Score=195.95 Aligned_cols=212 Identities=20% Similarity=0.244 Sum_probs=169.2
Q ss_pred HHHHHHHHHHHHHHHHhcCcccccccCCchhHHHHHHHhhcC---------CCcEEEccCCchh------HHHhcCCCHH
Q 017890 138 HMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALS---------ADDFILPQYREPG------VLLWRGYTLQ 202 (364)
Q Consensus 138 ~M~~~R~~D~~~~~~~rqGri~f~~~~~GqEa~~vg~a~aL~---------~~D~v~~~yR~~g------~ll~rG~~~~ 202 (364)
.|-.+|...-.+...-..|..++.++. -|...+-.-..++ ..|-++.+ .+|+ +....|+..+
T Consensus 13 ~~n~lri~si~~~~~a~sghp~s~~s~--A~~~~vlf~~~mr~~~~~p~~~n~Drfvls-~GHa~~llYa~~~l~G~~~~ 89 (632)
T KOG0523|consen 13 AVNNLRILSIDATSAAKSGHPGSPLSL--APIMHVLFFEVMRYNPADPYWFNRDRFVLS-NGHACPLLYAHWHLAGYDRE 89 (632)
T ss_pred HhhhhhhhhHHHHHhhhcCCCCCcccc--chhhhhhhhhheecccCCcCCCCCceEEEe-ccccchHHHHHHHHhccCcH
Confidence 455677777666666667766554443 3444444444443 24766665 3444 3444787777
Q ss_pred HHHHHHhcCCCCCCCCCCCccccCCCcccccccCCCcccchhHHHHHHHHhhhccC-CCeEEEEeCCCccccccHHHHHH
Q 017890 203 QFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKK-DACAVAYTGDGGTSEGDFHAALN 281 (364)
Q Consensus 203 ~~l~~~~g~~~~~~~Gr~mp~H~~~~~~~~~~~sg~LG~~lp~AvG~A~A~k~~~~-~~~vv~~~GDGa~~eG~~~EALn 281 (364)
+-|.+++- .|+..+.|+..+..++...+|++|++|+.|+|+|++.|+.+. +.+|+|++|||+++||..|||++
T Consensus 90 edl~~~Rq------~~s~t~ghp~~~~~~v~v~TG~lgQgis~a~GmA~~~k~~~k~~~rv~~vlGDG~~~eG~~~EA~s 163 (632)
T KOG0523|consen 90 EDLKNFRQ------IGSDTPGHPEPELPGVEVATGPLGQGISNAVGMAYAGKHLGKASNRVYCVLGDGCLTEGSVWEAMS 163 (632)
T ss_pred HHHHHHHh------hCCCCCCCCcccCCCceeccCCccchHHHHHHHHHHHHhhccccceEEEEEcCchhccchHHHHHh
Confidence 77878764 578889999876667777889999999999999999999887 89999999999999999999999
Q ss_pred HHHHcCC-CEEEEEEcCCcccccccccccCCccHHH-HHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEE
Q 017890 282 FAAVMEA-PVVFICRNNGWAISTNISEQFRSDGIVV-KGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVR 359 (364)
Q Consensus 282 ~Aa~~~L-PvIfVV~NNg~ais~~~~~~~~~~~ia~-~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~ 359 (364)
+|+.++| ++|+|.+||+..+++++...+. .++.+ +.++|||+++.|||+|++++.+++.+|+. ..++|++|-+.
T Consensus 164 ~Ag~l~ldnLVai~D~n~is~~g~t~~~~~-~dV~~~r~ea~g~~~~~V~~~d~d~i~ka~~~a~~---~k~kpt~i~~~ 239 (632)
T KOG0523|consen 164 LAGHLKLDNLVAIYDNNKISIDGATSLGFD-EDVYQLRFEAFGWNVIIVDGGDVDEIRKAIGKAKS---VKGKPTAIKAT 239 (632)
T ss_pred hhhhcccCCEEEEEccccccCCCCCccccc-ccHHHHHHHHhCceEEEEcCcCHHHHHHHHhhhhh---ccCCceeeeee
Confidence 9999999 8999999999999999887764 56666 99999999999999999999999999874 35799999999
Q ss_pred eec
Q 017890 360 LNF 362 (364)
Q Consensus 360 T~R 362 (364)
|+.
T Consensus 240 t~~ 242 (632)
T KOG0523|consen 240 TFI 242 (632)
T ss_pred eee
Confidence 863
No 39
>PRK05261 putative phosphoketolase; Provisional
Probab=99.81 E-value=3.1e-19 Score=191.45 Aligned_cols=198 Identities=20% Similarity=0.232 Sum_probs=153.9
Q ss_pred ccccccCCchhHHHHHHHhhcCCC--cEEEccCCchhH------HHhcC--------CCHHHH-HHHHhcCCCCCCCCCC
Q 017890 158 FSFYLTTIGEEAINIGSAAALSAD--DFILPQYREPGV------LLWRG--------YTLQQF-ANQVFANKADDGKGRQ 220 (364)
Q Consensus 158 i~f~~~~~GqEa~~vg~a~aL~~~--D~v~~~yR~~g~------ll~rG--------~~~~~~-l~~~~g~~~~~~~Gr~ 220 (364)
++.+-++.|+-.+.+.+....+.. |+++..--+||. +..-| ++.++. |..+|.+-. .-.+
T Consensus 49 ~GHwGt~pgln~vyahln~li~~~~~~~~~V~g~GHg~p~~~a~~~L~Gs~~~~yp~is~d~~gl~~lfrqfs---~pgg 125 (785)
T PRK05261 49 LGHWGTTPGLNFIYAHLNRLIRKYDLNMIYITGPGHGGPAMVANAYLEGTYSEIYPEITQDEEGMARLFKQFS---FPGG 125 (785)
T ss_pred CCCCCCcHHHHHHHHHHHHHHhhcCCceEEEeCCCccHHHHHHHHHHcCCCcccCCCCCccHHHHHHHHHhcc---CCCC
Confidence 478889999999988888888765 655554445542 22246 333332 443333221 1126
Q ss_pred CccccCCCcccccccCCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccH---HHHHHHHHHcCC-CEEEEEEc
Q 017890 221 MPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDF---HAALNFAAVMEA-PVVFICRN 296 (364)
Q Consensus 221 mp~H~~~~~~~~~~~sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~---~EALn~Aa~~~L-PvIfVV~N 296 (364)
+++|+....+|+...+|+||+++++|+|+|+. +++.+|+|++|||++++|.+ |++.+++..+++ .|+.|+++
T Consensus 126 ~~sH~~~~tPGi~~~~G~LG~gls~A~G~Al~----~~d~iv~~~vGDGE~EeG~lAa~W~~~~~~~~~~~g~vLPIld~ 201 (785)
T PRK05261 126 IPSHAAPETPGSIHEGGELGYSLSHAYGAAFD----NPDLIVACVVGDGEAETGPLATSWHSNKFLNPATDGAVLPILHL 201 (785)
T ss_pred cCCCCCCCCCCeeeCCCchhhHHHHHHHHHHc----CCCCEEEEEECcCchhhhhhHHHhhhhhhcccccCCCEEEEEEe
Confidence 89999876789999999999999999999964 57889999999999999984 888888888888 78999999
Q ss_pred CCcccccccccc-cCCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHH-----------HhhcC---CCcE--EEEEE
Q 017890 297 NGWAISTNISEQ-FRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAARE-----------MAISE---KRPV--LVEVR 359 (364)
Q Consensus 297 Ng~ais~~~~~~-~~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~-----------~ar~~---~~P~--LIea~ 359 (364)
|+|+|++++... ...+++.+++++|||+++.|||+|++++++++++|++ .||++ .+|. +|.++
T Consensus 202 Ng~~Is~pt~~~~~~~e~l~~rf~g~Gw~~i~VDG~D~~av~~a~a~al~~~i~~i~~iq~~Ar~~~~~~~P~wp~Ii~r 281 (785)
T PRK05261 202 NGYKIANPTILARISDEELEALFRGYGYEPYFVEGDDPADMHQEMAAALDTAIEEIRAIQKEAREGGDTTRPRWPMIVLR 281 (785)
T ss_pred cCCcCCCCccccccCcHhHHHHHHHCCCeeEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCceEEEEE
Confidence 999999999865 4457899999999999999999999999999776654 33434 5899 99999
Q ss_pred eec
Q 017890 360 LNF 362 (364)
Q Consensus 360 T~R 362 (364)
|..
T Consensus 282 T~k 284 (785)
T PRK05261 282 TPK 284 (785)
T ss_pred CCc
Confidence 864
No 40
>cd00568 TPP_enzymes Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. These enzymes include, among others, the E1 components of the pyruvate, the acetoin and the branched chain alpha-keto acid dehydrogenase complexes.
Probab=99.77 E-value=2.6e-18 Score=151.24 Aligned_cols=116 Identities=26% Similarity=0.342 Sum_probs=95.8
Q ss_pred cccCCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccccc------
Q 017890 233 ITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNIS------ 306 (364)
Q Consensus 233 ~~~sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~------ 306 (364)
....++||+++|.|+|++++. ++++|||++|||++.+ ..++|++|..+++|+++||.||++...+...
T Consensus 42 ~~~~g~~G~~~~~a~Gaa~a~----~~~~vv~~~GDG~~~~--~~~~l~ta~~~~~~~~~iv~nN~~~~~~~~~~~~~~~ 115 (168)
T cd00568 42 STGFGAMGYGLPAAIGAALAA----PDRPVVCIAGDGGFMM--TGQELATAVRYGLPVIVVVFNNGGYGTIRMHQEAFYG 115 (168)
T ss_pred CCCchhhhhhHHHHHHHHHhC----CCCcEEEEEcCcHHhc--cHHHHHHHHHcCCCcEEEEEECCccHHHHHHHHHHcC
Confidence 445689999999999999886 4789999999999998 4588999999999999999888865544322
Q ss_pred -----cccCCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEe
Q 017890 307 -----EQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRL 360 (364)
Q Consensus 307 -----~~~~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T 360 (364)
......++.+.+++||+++++|++ ++++.++++++++ .++|+|||++|
T Consensus 116 ~~~~~~~~~~~d~~~~a~~~G~~~~~v~~--~~~l~~a~~~a~~----~~~p~~i~v~~ 168 (168)
T cd00568 116 GRVSGTDLSNPDFAALAEAYGAKGVRVED--PEDLEAALAEALA----AGGPALIEVKT 168 (168)
T ss_pred CCcccccCCCCCHHHHHHHCCCeEEEECC--HHHHHHHHHHHHh----CCCCEEEEEEC
Confidence 223456899999999999999984 7888888887764 68999999986
No 41
>cd02004 TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) family, BZL_OCoD_HPCL subfamily, TPP-binding module; composed of proteins similar to benzaldehyde lyase (BZL), oxalyl-CoA decarboxylase (OCoD) and 2-hydroxyphytanoyl-CoA lyase (2-HPCL). Pseudomonas fluorescens biovar I BZL cleaves the acyloin linkage of benzoin producing 2 molecules of benzaldehyde and enabling the Pseudomonas to grow on benzoin as the sole carbon and energy source. OCoD has a role in the detoxification of oxalate, catalyzing the decarboxylation of oxalyl-CoA to formate. 2-HPCL is a peroxisomal enzyme which plays a role in the alpha-oxidation of 3-methyl-branched fatty acids, catalyzing the cleavage of 2-hydroxy-3-methylacyl-CoA into formyl-CoA and a 2-methyl-branched fatty aldehyde. All these enzymes depend on Mg2+ and TPP for activity.
Probab=99.76 E-value=5.2e-18 Score=151.69 Aligned_cols=114 Identities=21% Similarity=0.278 Sum_probs=93.3
Q ss_pred cCCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcC-Ccccccccccc-----
Q 017890 235 ISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNN-GWAISTNISEQ----- 308 (364)
Q Consensus 235 ~sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NN-g~ais~~~~~~----- 308 (364)
..|+||+++|.|+|+++|. ++++|||++|||++++. .++|.+|+++++|+++||.|| +|++.....+.
T Consensus 46 ~~g~mG~~lp~AiGa~la~----~~~~vv~i~GDG~f~~~--~~el~ta~~~~lpv~ivv~NN~~~~~~~~~~~~~~~~~ 119 (172)
T cd02004 46 TFGTLGVGLGYAIAAALAR----PDKRVVLVEGDGAFGFS--GMELETAVRYNLPIVVVVGNNGGWYQGLDGQQLSYGLG 119 (172)
T ss_pred CCCcccchHHHHHHHHHhC----CCCeEEEEEcchhhcCC--HHHHHHHHHcCCCEEEEEEECcccccchhhhhhhccCC
Confidence 3588999999999998874 67899999999999974 466999999999987776555 68876543221
Q ss_pred ------cCCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEe
Q 017890 309 ------FRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRL 360 (364)
Q Consensus 309 ------~~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T 360 (364)
....++++++++||+++.+|+ +++++.++++++++ .++|+|||+++
T Consensus 120 ~~~~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~liev~i 171 (172)
T cd02004 120 LPVTTLLPDTRYDLVAEAFGGKGELVT--TPEELKPALKRALA----SGKPALINVII 171 (172)
T ss_pred CceeccCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHH----cCCCEEEEEEc
Confidence 235689999999999999998 58899888888775 47999999986
No 42
>cd02013 TPP_Xsc_like Thiamine pyrophosphate (TPP) family, Xsc-like subfamily, TPP-binding module; composed of proteins similar to Alcaligenes defragrans sulfoacetaldehyde acetyltransferase (Xsc). Xsc plays a key role in the degradation of taurine, catalyzing the desulfonation of 2-sulfoacetaldehyde into sulfite and acetyl phosphate. This enzyme requires TPP and divalent metal ions for activity.
Probab=99.75 E-value=5.6e-18 Score=155.29 Aligned_cols=118 Identities=22% Similarity=0.279 Sum_probs=95.5
Q ss_pred CCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEE-cCCccccccccc-------
Q 017890 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICR-NNGWAISTNISE------- 307 (364)
Q Consensus 236 sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~-NNg~ais~~~~~------- 307 (364)
.++||+++|.|+|+++|. ++++|||++|||++++. ..| |.+|+++++|+++||. |++|++......
T Consensus 52 ~g~mG~~lpaaiGa~la~----p~r~vv~i~GDG~f~m~-~~e-L~Ta~~~~lpvi~vV~NN~~yg~~~~~q~~~~~~~~ 125 (196)
T cd02013 52 FGNCGYALPAIIGAKAAA----PDRPVVAIAGDGAWGMS-MME-IMTAVRHKLPVTAVVFRNRQWGAEKKNQVDFYNNRF 125 (196)
T ss_pred CcccccHHHHHHHHHHhC----CCCcEEEEEcchHHhcc-HHH-HHHHHHhCCCeEEEEEECchhHHHHHHHHHHcCCCc
Confidence 488999999999998874 68899999999999984 555 9999999999987775 556876432111
Q ss_pred ---ccCCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q 017890 308 ---QFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNF 362 (364)
Q Consensus 308 ---~~~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R 362 (364)
.....++++.|++||+++++|+ +++++.+++++|++.++. ++|+|||+++.+
T Consensus 126 ~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~~~~~-~~p~liev~v~~ 180 (196)
T cd02013 126 VGTELESESFAKIAEACGAKGITVD--KPEDVGPALQKAIAMMAE-GKTTVIEIVCDQ 180 (196)
T ss_pred ccccCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHhcCCC-CCeEEEEEEeCc
Confidence 1234689999999999999998 689999999999875443 789999999864
No 43
>cd02006 TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl subfamily, TPP-binding module; composed of proteins similar to Escherichia coli glyoxylate carboligase (Gcl). E. coli glyoxylate carboligase, plays a key role in glyoxylate metabolism where it catalyzes the condensation of two molecules of glyoxylate to give tartronic semialdehyde and carbon dioxide. This enzyme requires TPP, magnesium ion and FAD as cofactors.
Probab=99.74 E-value=1.1e-17 Score=153.86 Aligned_cols=120 Identities=23% Similarity=0.278 Sum_probs=96.6
Q ss_pred cCCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCC-ccccccccc------
Q 017890 235 ISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNG-WAISTNISE------ 307 (364)
Q Consensus 235 ~sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg-~ais~~~~~------ 307 (364)
..|+||+++|.|+|+++|. ++++|||++|||++++. ..| |.+|.++++|+++||.||+ |++.....+
T Consensus 55 ~~GsmG~~lpaaiGa~la~----p~~~vv~i~GDG~f~m~-~~e-L~Ta~~~~lpviivV~NN~~yg~~~~~q~~~~~~~ 128 (202)
T cd02006 55 QAGPLGWTVPAALGVAAAD----PDRQVVALSGDYDFQFM-IEE-LAVGAQHRIPYIHVLVNNAYLGLIRQAQRAFDMDY 128 (202)
T ss_pred CccchhhhhHHHHhHHhhC----CCCeEEEEEeChHhhcc-HHH-HHHHHHhCCCeEEEEEeCchHHHHHHHHHHhcCcc
Confidence 3589999999999998874 68899999999999985 455 9999999999988877775 765321110
Q ss_pred -------c-------cCCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q 017890 308 -------Q-------FRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNF 362 (364)
Q Consensus 308 -------~-------~~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R 362 (364)
. ....++++.|++||+++.+|+ +++++.+++++|++.+++.++|+|||+++-+
T Consensus 129 ~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~~~~~~~~p~liev~i~~ 195 (202)
T cd02006 129 QVNLAFENINSSELGGYGVDHVKVAEGLGCKAIRVT--KPEELAAAFEQAKKLMAEHRVPVVVEAILER 195 (202)
T ss_pred ccccccccccccccCCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHHhcccCCCcEEEEEEecc
Confidence 0 013689999999999999998 7899999999998655446799999999865
No 44
>cd02002 TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC subfamily, TPP-binding module; composed of proteins similar to Pseudomonas putida benzoylformate decarboxylase (BFDC). P. putida BFDC plays a role in the mandelate pathway, catalyzing the conversion of benzoylformate to benzaldehyde and carbon dioxide. This enzyme is dependent on TPP and a divalent metal cation as cofactors.
Probab=99.74 E-value=1e-17 Score=150.16 Aligned_cols=112 Identities=28% Similarity=0.295 Sum_probs=93.2
Q ss_pred CCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCC-ccccccccc--------
Q 017890 237 SPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNG-WAISTNISE-------- 307 (364)
Q Consensus 237 g~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg-~ais~~~~~-------- 307 (364)
|+||+++|.|+|+++|. ++++|||++|||+++++. .+|.+|.++++|+++||.||+ |++......
T Consensus 49 g~mG~~lp~aiGaala~----~~~~vv~i~GDG~f~~~~--~el~ta~~~~~p~~~iV~nN~~~~~~~~~~~~~~~~~~~ 122 (178)
T cd02002 49 GGLGWGLPAAVGAALAN----PDRKVVAIIGDGSFMYTI--QALWTAARYGLPVTVVILNNRGYGALRSFLKRVGPEGPG 122 (178)
T ss_pred ccccchHHHHHHHHhcC----CCCeEEEEEcCchhhccH--HHHHHHHHhCCCeEEEEEcCccHHHHHHHHHHHcCCCcc
Confidence 89999999999999885 578999999999999873 469999999999998888885 887542111
Q ss_pred ---------ccCCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEe
Q 017890 308 ---------QFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRL 360 (364)
Q Consensus 308 ---------~~~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T 360 (364)
.....++++.+++||+++++|++ ++++.+++++|++ .++|+|||+++
T Consensus 123 ~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~--~~el~~al~~a~~----~~~p~vi~v~v 178 (178)
T cd02002 123 ENAPDGLDLLDPGIDFAAIAKAFGVEAERVET--PEELDEALREALA----EGGPALIEVVV 178 (178)
T ss_pred cccccccccCCCCCCHHHHHHHcCCceEEeCC--HHHHHHHHHHHHh----CCCCEEEEEEC
Confidence 11246899999999999999985 8899999988875 57899999874
No 45
>PRK11864 2-ketoisovalerate ferredoxin oxidoreductase subunit beta; Provisional
Probab=99.73 E-value=7.8e-17 Score=156.98 Aligned_cols=167 Identities=17% Similarity=0.160 Sum_probs=134.5
Q ss_pred cCCchhHHHhcCCCHH-HHHHHHhcCCC------CCCCCCCCccccCCCcccccccCCCcccchhHHHHHHHHhhhccCC
Q 017890 187 QYREPGVLLWRGYTLQ-QFANQVFANKA------DDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKD 259 (364)
Q Consensus 187 ~yR~~g~ll~rG~~~~-~~l~~~~g~~~------~~~~Gr~mp~H~~~~~~~~~~~sg~LG~~lp~AvG~A~A~k~~~~~ 259 (364)
-||+|+.....|.++. ..+.+.+++.. |+..+.+...|+.. .++....+++|.++++|.|+++|.|..+++
T Consensus 14 ~~~gh~~C~GCG~~~~~~~l~~~lg~~~v~~~~iGC~~~~~g~~p~~~--~~~~~i~~~~G~~~~~A~G~a~A~~~~~~~ 91 (300)
T PRK11864 14 FYPGNAACPGCGAPLGLRYLLKALGEKTVLVIPASCSTVIQGDTPKSP--LTVPVLHTAFAATAAVASGIEEALKARGEK 91 (300)
T ss_pred ecCCCccCCCCCCHHHHHHHHHHhCCCeEEEeCCCccceecCCCCccc--ccccceeehhhChHHHHHHHHHHHHhhCCC
Confidence 5788999999998877 78888887766 66666666656554 366677899999999999999999887655
Q ss_pred -CeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccccc-----------------cccCCccHHHHHhhc
Q 017890 260 -ACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNIS-----------------EQFRSDGIVVKGRAY 321 (364)
Q Consensus 260 -~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~-----------------~~~~~~~ia~~a~a~ 321 (364)
..|++++|||++.++.+ |+|+.|+.+++|++|||.||.+.+.|-.+ .....-|+...+.++
T Consensus 92 ~~~Vva~~GDG~~~~~g~-~~l~~A~~~~~~v~~vv~dN~~~~~TGgQ~S~~Tp~ga~t~tsp~G~~~~kkdi~~i~~a~ 170 (300)
T PRK11864 92 GVIVVGWAGDGGTADIGF-QALSGAAERNHDILYIMYDNEAYMNTGIQRSSSTPYGAWTTTTPGGKREHKKPVPDIMAAH 170 (300)
T ss_pred CcEEEEEEccCccccccH-HHHHHHHHhCcCEEEEEECCeeeecCCCCCCCCCcCCCccccCCCCCcCCCCCHHHHHHHc
Confidence 45666999999988886 99999999999999999999986654221 111235788899999
Q ss_pred CeEEE-EEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEe
Q 017890 322 GIRSI-RVDGNDALAVYTAVQAAREMAISEKRPVLVEVRL 360 (364)
Q Consensus 322 G~~~~-~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T 360 (364)
|++.+ +++-.|+.++.+++++|.+ .++|.+|++.+
T Consensus 171 g~~yVA~~~~~~~~~~~~~i~~A~~----~~Gps~I~~~s 206 (300)
T PRK11864 171 KVPYVATASIAYPEDFIRKLKKAKE----IRGFKFIHLLA 206 (300)
T ss_pred CCCEEEEEeCCCHHHHHHHHHHHHh----CCCCEEEEEeC
Confidence 99666 7788899999999999987 57999999874
No 46
>PF13292 DXP_synthase_N: 1-deoxy-D-xylulose-5-phosphate synthase; PDB: 2O1X_C 2O1S_B.
Probab=99.72 E-value=1.8e-17 Score=157.70 Aligned_cols=220 Identities=18% Similarity=0.226 Sum_probs=142.2
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccCCchhHHHHHHHhhcC-CCcEEEc--cCCchhHHHhc
Q 017890 121 GSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALS-ADDFILP--QYREPGVLLWR 197 (364)
Q Consensus 121 ~~~~~~~s~e~l~~ly~~M~~~R~~D~~~~~~~rqGri~f~~~~~GqEa~~vg~a~aL~-~~D~v~~--~yR~~g~ll~r 197 (364)
|.+...++.++|.++-+. +|.+ ++....+.| +...++.|---..++....++ |.|.|+. .|....+-+..
T Consensus 7 p~dlk~ls~~eL~~La~e---iR~~--ii~~vs~~G--GHl~snLGvVELTiALH~vFd~p~DkivwDvGHQ~Y~HKiLT 79 (270)
T PF13292_consen 7 PEDLKKLSIEELEQLAQE---IREF--IIETVSKTG--GHLASNLGVVELTIALHYVFDSPKDKIVWDVGHQAYVHKILT 79 (270)
T ss_dssp HHHHTTS-GGGHHHHHHH---HHHH--HHHHCTCCC--STHHHHHCCHHHHHHHHHHS-TTTSEEEESSSTT-HHHHHCT
T ss_pred HHHHHcCCHHHHHHHHHH---HHHH--HHHHHhhcC--CCCCCCccHHHHHHHHHHHhCCCCCeEEEecccccchhhhcc
Confidence 334557888888877654 4432 222222333 466788888888888888887 7897776 57777777766
Q ss_pred CCCHHHHHHHHhcCCCCCCCCCCCccccCCCcc-cccccCCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccH
Q 017890 198 GYTLQQFANQVFANKADDGKGRQMPIHYGSKKL-NYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDF 276 (364)
Q Consensus 198 G~~~~~~l~~~~g~~~~~~~Gr~mp~H~~~~~~-~~~~~sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~ 276 (364)
|.. +.|..++ +-.++++.+...+. .-.+..|+-++.++.|+|+|.|.++++++..||+++|||++.-|..
T Consensus 80 GR~--~~f~TlR-------q~gGlSGF~~r~ES~~D~f~~GHsstsiSaa~Gma~ar~l~~~~~~vVaVIGDGalt~Gma 150 (270)
T PF13292_consen 80 GRR--DRFHTLR-------QYGGLSGFPKRSESEYDAFGAGHSSTSISAALGMAVARDLKGEDRKVVAVIGDGALTGGMA 150 (270)
T ss_dssp TTC--CCGGGTT-------STTS--SS--TTT-TT--S--SSSS-HHHHHHHHHHHHHHHTS---EEEEEETTGGGSHHH
T ss_pred CcH--HHhchhh-------hcCCcCCCCCcccCCCCcccCCccHhHHHHHHHHHHHHHhcCCCCcEEEEECCcchhHHHH
Confidence 642 2233332 12233443333332 2234679999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCEEEEEEcCCcccccccccc------------c---C--------------------CccH----HHH
Q 017890 277 HAALNFAAVMEAPVVFICRNNGWAISTNISEQ------------F---R--------------------SDGI----VVK 317 (364)
Q Consensus 277 ~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~~------------~---~--------------------~~~i----a~~ 317 (364)
+||||-|+..+-++|+|+++|+..|+..+... + . .+.+ ...
T Consensus 151 ~EALN~~g~~~~~liVILNDN~mSIs~nvGals~~L~~l~~~~~y~~~k~~~~~~l~~~~~~~~~~~r~~~s~K~~~~~l 230 (270)
T PF13292_consen 151 FEALNNAGHLKSNLIVILNDNEMSISPNVGALSKYLSKLRSSPTYNKLKEDVKSLLKKIPPIEEFAKRIKESLKGFSPNL 230 (270)
T ss_dssp HHHHHHHHHHT-SEEEEEEE-SBSSSB--SSHCCC-------------------------------------------CC
T ss_pred HHHHHHHHhcCCCEEEEEeCCCcccCCCcchHHHHHHhccchhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhhhHHH
Confidence 99999999999999999999999887543110 0 0 0001 123
Q ss_pred HhhcCeEEE-EEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEe
Q 017890 318 GRAYGIRSI-RVDGNDALAVYTAVQAAREMAISEKRPVLVEVRL 360 (364)
Q Consensus 318 a~a~G~~~~-~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T 360 (364)
++.+|+.++ .|||||++++.++++.+++ -++|+||+++|
T Consensus 231 Fe~LG~~Y~GPiDGHdl~~Li~~l~~~K~----~~gPvllHV~T 270 (270)
T PF13292_consen 231 FEELGFDYIGPIDGHDLEELIEVLENAKD----IDGPVLLHVIT 270 (270)
T ss_dssp CHHCT-EEEEEEETT-HHHHHHHHHHHCC----SSSEEEEEEE-
T ss_pred HHHcCCeEEeccCCCCHHHHHHHHHHHhc----CCCCEEEEEeC
Confidence 566799998 5899999999999988775 58999999987
No 47
>cd02014 TPP_POX Thiamine pyrophosphate (TPP) family, Pyruvate oxidase (POX) subfamily, TPP-binding module; composed of proteins similar to Lactobacillus plantarum POX, which plays a key role in controlling acetate production under aerobic conditions. POX decarboxylates pyruvate, producing hydrogen peroxide and the energy-storage metabolite acetylphosphate. It requires FAD in addition to TPP and a divalent cation as cofactors.
Probab=99.72 E-value=5.5e-17 Score=146.25 Aligned_cols=116 Identities=23% Similarity=0.327 Sum_probs=94.1
Q ss_pred cCCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCC-cccccccc-------
Q 017890 235 ISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNG-WAISTNIS------- 306 (364)
Q Consensus 235 ~sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg-~ais~~~~------- 306 (364)
..|+||+++|.|+|+++|. ++++||+++|||+++++ ..| |.+|..+++|+++||.||+ |++.....
T Consensus 49 ~~g~mG~~~~~aiGa~~a~----~~~~vv~i~GDG~f~~~-~~e-l~t~~~~~lp~~~iv~NN~~~~~~~~~~~~~~~~~ 122 (178)
T cd02014 49 LLATMGNGLPGAIAAKLAY----PDRQVIALSGDGGFAML-MGD-LITAVKYNLPVIVVVFNNSDLGFIKWEQEVMGQPE 122 (178)
T ss_pred CCchhhhHHHHHHHHHHhC----CCCcEEEEEcchHHHhh-HHH-HHHHHHhCCCcEEEEEECCchhHHHHHHHHhcCCc
Confidence 3489999999999998874 67899999999999987 666 8889999999988888885 77642111
Q ss_pred --cccCCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q 017890 307 --EQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNF 362 (364)
Q Consensus 307 --~~~~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R 362 (364)
......++.+.+++||+++++|+ +++++.++++++++ .++|+|||+++.+
T Consensus 123 ~~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~~l~~a~~----~~~p~liev~~~~ 174 (178)
T cd02014 123 FGVDLPNPDFAKIAEAMGIKGIRVE--DPDELEAALDEALA----ADGPVVIDVVTDP 174 (178)
T ss_pred eeccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEeCC
Confidence 01134689999999999999998 68888888887765 5799999999865
No 48
>KOG0451 consensus Predicted 2-oxoglutarate dehydrogenase, E1 subunit [Carbohydrate transport and metabolism]
Probab=99.72 E-value=8.4e-17 Score=164.05 Aligned_cols=237 Identities=19% Similarity=0.163 Sum_probs=183.6
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccCCchhHHHHHHH------hhcCCCcEEEc-cCCchhHHHh-
Q 017890 125 QQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSA------AALSADDFILP-QYREPGVLLW- 196 (364)
Q Consensus 125 ~~~s~e~l~~ly~~M~~~R~~D~~~~~~~rqGri~f~~~~~GqEa~~vg~a------~aL~~~D~v~~-~yR~~g~ll~- 196 (364)
.++.+|++.++-+.|+.+..||+++...+..-+ -| ...|.|.+..=.- +--+..|+|++ .||++..++.
T Consensus 152 e~l~keEr~~i~~Lmlksq~fD~FlatKFpTvK--RY-GgEGAESM~aFF~eLl~~sa~~~ie~viigmpHRGRlnLlt~ 228 (913)
T KOG0451|consen 152 EQLGKEERCEIAELMLKSQAFDNFLATKFPTVK--RY-GGEGAESMLAFFWELLRDSAQANIEHVIIGMPHRGRLNLLTA 228 (913)
T ss_pred HHhhHHHHHHHHHHHHhhhhHHHHHHhccchhh--hh-ccccHHHHHHHHHHHHHHHHhcCcceEEEeccccCcchHHHH
Confidence 368899999999999999999999988765422 11 2456665532111 11246799998 5999988776
Q ss_pred -cCCCHHHHHHHHhcCCCCCC---CCCCCccccCC--------Ccc--cccccCCCcccchhHHHHHHHHhhhc------
Q 017890 197 -RGYTLQQFANQVFANKADDG---KGRQMPIHYGS--------KKL--NYITISSPIATQLPQAVGVAYSLKME------ 256 (364)
Q Consensus 197 -rG~~~~~~l~~~~g~~~~~~---~Gr~mp~H~~~--------~~~--~~~~~sg~LG~~lp~AvG~A~A~k~~------ 256 (364)
..|++..++..+.|...-+. .-+..-.|..+ +++ ...++.++|....|+|+|-+.+.+..
T Consensus 229 Ll~fpP~~mFRK~~G~sEFpE~~~A~gDVlSHl~sS~dykg~~~~lhvtMlpNPSHLEAvNPVAmGKtR~rqqsr~~Gdy 308 (913)
T KOG0451|consen 229 LLNFPPAKMFRKLSGASEFPEDIEAMGDVLSHLHSSEDYKGLGKKLHVTMLPNPSHLEAVNPVAMGKTRSRQQSRGEGDY 308 (913)
T ss_pred HhcCCHHHHHHHhcCcccCchhhhHHHHHHHHhhhhhhhcccCCceEEEecCChhhhhccCchhhcchhHHHHhhcCCCC
Confidence 57999999999988765432 11222234322 111 24677899999999999999887542
Q ss_pred --------cCCCeEEEEeCCCcc-ccccHHHHHHHHHH--cCC-CEEEEEEcCCcccccccccccCCccHHHHHhhcCeE
Q 017890 257 --------KKDACAVAYTGDGGT-SEGDFHAALNFAAV--MEA-PVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIR 324 (364)
Q Consensus 257 --------~~~~~vv~~~GDGa~-~eG~~~EALn~Aa~--~~L-PvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~ 324 (364)
++....|.+.||+++ .+|.++|.++++-. +++ ..+.+|.||+.+..+|.+...+...-.+.|++++++
T Consensus 309 spd~sa~~Gd~Vlnv~vHGDaaF~GQGiv~E~~~ls~~PHFrvGGsvHLivNNQvgfTtp~~rGRSs~ycsDiaK~~~~p 388 (913)
T KOG0451|consen 309 SPDSSAPFGDHVLNVIVHGDAAFAGQGIVQECLNLSYVPHFRVGGSVHLIVNNQVGFTTPGDRGRSSAYCSDIAKSIQAP 388 (913)
T ss_pred CCCCcCCCCCceEEEEEecchhhccCcccHHHHhhccCCceeecceEEEEecccccccCcccccccchhhhHHHHHhCCC
Confidence 112256778999998 79999999999864 455 579999999999999988877777778899999999
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeeccC
Q 017890 325 SIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNFLW 364 (364)
Q Consensus 325 ~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R~~ 364 (364)
++.|+|.|+++|.+|.+-|++|.|+.++.++|+..+||.|
T Consensus 389 viHVNGD~PEevvraTrLAf~Yqr~FRKDvfIdL~CfRrw 428 (913)
T KOG0451|consen 389 VIHVNGDDPEEVVRATRLAFRYQREFRKDVFIDLNCFRRW 428 (913)
T ss_pred EEEeCCCCHHHHHHHHHHHHHHHHHhhhhheeehHHHHHh
Confidence 9999999999999999999999999999999999999988
No 49
>COG0567 SucA 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes [Energy production and conversion]
Probab=99.71 E-value=1.9e-16 Score=169.95 Aligned_cols=238 Identities=15% Similarity=0.107 Sum_probs=194.7
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcccccccCCchhHHHHHHHhhc------CCCcEEEc-cCCchhHH
Q 017890 123 DFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQ-RQGRFSFYLTTIGEEAINIGSAAAL------SADDFILP-QYREPGVL 194 (364)
Q Consensus 123 ~~~~~s~e~l~~ly~~M~~~R~~D~~~~~~~-rqGri~f~~~~~GqEa~~vg~a~aL------~~~D~v~~-~yR~~g~l 194 (364)
..+.+++|+.+.+++.+..+..||+.+-..+ .|.|.| ..|-|+...++-..+ ..+++|++ .||++...
T Consensus 168 ~~~~~~~e~k~~~l~~L~~ae~fE~fl~~kf~g~KRFs----lEG~eslip~l~~~i~~~~~~G~~~vviGMaHRGRLNv 243 (906)
T COG0567 168 GKPTFTAEEKKAILKRLTAAEGFERFLHTKFPGAKRFS----LEGGESLIPMLDELIDRAGKQGVKEVVIGMAHRGRLNV 243 (906)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHhhccCCCCcccc----ccchhhHHHHHHHHHHHHHhcCcceEEecccccchHHH
Confidence 4578999999999999999999999987766 366643 589999877665544 35699999 59999877
Q ss_pred Hh--cCCCHHHHHHHHhcCCCCCCCCCCCccccCCCc----------ccccccCCCcccchhHHHHHHHHhhhccC----
Q 017890 195 LW--RGYTLQQFANQVFANKADDGKGRQMPIHYGSKK----------LNYITISSPIATQLPQAVGVAYSLKMEKK---- 258 (364)
Q Consensus 195 l~--rG~~~~~~l~~~~g~~~~~~~Gr~mp~H~~~~~----------~~~~~~sg~LG~~lp~AvG~A~A~k~~~~---- 258 (364)
|. .|.+++.++++|.|+..-...-+....|.|... +.+.++.|+|-...|+..|.+.|.+-...
T Consensus 244 L~nvlgKp~~~if~eF~g~~~~~~~sGDVKYH~G~~~~~~~~~~~v~l~La~NPSHLE~v~PVV~G~vRa~Qd~~~d~~~ 323 (906)
T COG0567 244 LVNVLGKPYRDIFDEFEGKSAEPDLSGDVKYHLGFSSDRQTDGGKVHLSLAFNPSHLEIVNPVVEGSVRAKQDRLGDTER 323 (906)
T ss_pred HHHHhCCCHHHHHHHhCCCCCCCCcccccccccccccccccCCCeeEEEecCCcchhhhhchhhhcchHhhhhhhccCcc
Confidence 76 699999999999986543222334566765311 12456779999999999999999875422
Q ss_pred -CCeEEEEeCCCcc-ccccHHHHHHHHHHcCC---CEEEEEEcCCcccccccccccCCccHHHHHhhcCeEEEEEeCCCH
Q 017890 259 -DACAVAYTGDGGT-SEGDFHAALNFAAVMEA---PVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGNDA 333 (364)
Q Consensus 259 -~~~vv~~~GDGa~-~eG~~~EALn~Aa~~~L---PvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~~~~VDGnD~ 333 (364)
....|.++||.++ .+|.+.|.||+...-+. +.|.||.||+.+.+|......+.+.-.+.|+.+++|+++|+|.|+
T Consensus 324 ~k~lpiliHGDAAfaGQGVV~Etlnls~~~gysvgGtiHiviNNQiGFTTsp~~sRSt~Y~TDvAKm~~aPifHVN~DDP 403 (906)
T COG0567 324 DKVLPILIHGDAAFAGQGVVAETLNLSRLDGYSVGGTWHIVINNQIGFTTSPADARSTPYCTDVAKMIEAPIFHVNADDP 403 (906)
T ss_pred ceeEEEEEecChhcCCccHHHHHHHhhCCCCcccCCeEEEEEecCCCCCCCcccccCCCCCCChhhccCCceeecccCCc
Confidence 2456799999998 79999999999987654 889999999999998855555556666889999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCcEEEEEEeeccC
Q 017890 334 LAVYTAVQAAREMAISEKRPVLVEVRLNFLW 364 (364)
Q Consensus 334 ~av~~a~~~A~~~ar~~~~P~LIea~T~R~~ 364 (364)
+|+..+.+.|.+++.+.+++++|+..+||+|
T Consensus 404 EAv~~a~~~A~e~R~~F~kDvvIDlvcYRr~ 434 (906)
T COG0567 404 EAVLFAPALALEYRNGFKKDVVIDLVCYRRH 434 (906)
T ss_pred hhhhhhHHHHHHHHhhcCCCeeeecccCCCC
Confidence 9999999999999999999999999999986
No 50
>cd02015 TPP_AHAS Thiamine pyrophosphate (TPP) family, Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding module; composed of proteins similar to the large catalytic subunit of AHAS. AHAS catalyzes the condensation of two molecules of pyruvate to give the acetohydroxyacid, 2-acetolactate. 2-Acetolactate is the precursor of the branched chain amino acids, valine and leucine. AHAS also catalyzes the condensation of pyruvate and 2-ketobutyrate to form 2-aceto-2-hydroxybutyrate in isoleucine biosynthesis. In addition to requiring TPP and a divalent metal ion as cofactors, AHAS requires FAD.
Probab=99.70 E-value=1.4e-16 Score=144.40 Aligned_cols=115 Identities=25% Similarity=0.369 Sum_probs=91.5
Q ss_pred CCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCC-ccccccc------c--
Q 017890 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNG-WAISTNI------S-- 306 (364)
Q Consensus 236 sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg-~ais~~~------~-- 306 (364)
.++||+++|.|+|+++|. ++++||+++|||++++. ..| |.+|+++++|+++||.||+ |++.... .
T Consensus 49 ~g~mG~~lp~aiGa~la~----~~~~vv~i~GDG~f~~~-~~e-L~ta~~~~lpi~ivV~nN~~~~~~~~~~~~~~~~~~ 122 (186)
T cd02015 49 LGTMGFGLPAAIGAKVAR----PDKTVICIDGDGSFQMN-IQE-LATAAQYNLPVKIVILNNGSLGMVRQWQELFYEGRY 122 (186)
T ss_pred ccchhchHHHHHHHHHhC----CCCeEEEEEcccHHhcc-HHH-HHHHHHhCCCeEEEEEECCccHHHHHHHHHHcCCce
Confidence 489999999999998874 67899999999999974 555 9999999999987777776 5542210 0
Q ss_pred ---cccCCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q 017890 307 ---EQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNF 362 (364)
Q Consensus 307 ---~~~~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R 362 (364)
......++++.|++||+++++|++ .+++.+++++|++ .++|+|||+++.+
T Consensus 123 ~~~~~~~~~d~~~~a~a~G~~~~~v~~--~~el~~al~~a~~----~~~p~liev~~~~ 175 (186)
T cd02015 123 SHTTLDSNPDFVKLAEAYGIKGLRVEK--PEELEAALKEALA----SDGPVLLDVLVDP 175 (186)
T ss_pred eeccCCCCCCHHHHHHHCCCceEEeCC--HHHHHHHHHHHHh----CCCCEEEEEEeCC
Confidence 111346899999999999999984 7788888877765 6899999999864
No 51
>cd02010 TPP_ALS Thiamine pyrophosphate (TPP) family, Acetolactate synthase (ALS) subfamily, TPP-binding module; composed of proteins similar to Klebsiella pneumoniae ALS, a catabolic enzyme required for butanediol fermentation. ALS catalyzes the conversion of 2 molecules of pyruvate to acetolactate and carbon dioxide. ALS does not contain FAD, and requires TPP and a divalent metal cation for activity.
Probab=99.69 E-value=1.7e-16 Score=143.37 Aligned_cols=116 Identities=20% Similarity=0.354 Sum_probs=93.5
Q ss_pred cCCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcC-Cccccccc--------
Q 017890 235 ISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNN-GWAISTNI-------- 305 (364)
Q Consensus 235 ~sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NN-g~ais~~~-------- 305 (364)
..++||+++|.|+|+++|. ++++||+++|||++.+. .. .|.+|.++++|+++||.|| +|++....
T Consensus 46 ~~g~mG~~lp~aiGa~la~----~~~~vv~i~GDG~f~m~-~~-eL~ta~~~~l~vi~vV~NN~~~g~~~~~~~~~~~~~ 119 (177)
T cd02010 46 GLATMGVALPGAIGAKLVY----PDRKVVAVSGDGGFMMN-SQ-ELETAVRLKIPLVVLIWNDNGYGLIKWKQEKEYGRD 119 (177)
T ss_pred CChhhhhHHHHHHHHHHhC----CCCcEEEEEcchHHHhH-HH-HHHHHHHHCCCeEEEEEECCcchHHHHHHHHhcCCc
Confidence 4589999999999999884 67899999999999875 34 4999999999997776655 57764211
Q ss_pred -ccccCCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q 017890 306 -SEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNF 362 (364)
Q Consensus 306 -~~~~~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R 362 (364)
.......++++.|++||+++.+|+ +++++.+++++|++ .++|+|||+.+.+
T Consensus 120 ~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~liev~~~~ 171 (177)
T cd02010 120 SGVDFGNPDFVKYAESFGAKGYRIE--SADDLLPVLERALA----ADGVHVIDCPVDY 171 (177)
T ss_pred ccCcCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHh----CCCCEEEEEEecc
Confidence 011124589999999999999997 79999999998876 5799999999864
No 52
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]
Probab=99.68 E-value=8.2e-16 Score=159.27 Aligned_cols=221 Identities=19% Similarity=0.213 Sum_probs=160.6
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcccccccCCchhHHHHHHHhhcC-CCcEEEc--cCCchhHHH
Q 017890 120 KGSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQ-RQGRFSFYLTTIGEEAINIGSAAALS-ADDFILP--QYREPGVLL 195 (364)
Q Consensus 120 ~~~~~~~~s~e~l~~ly~~M~~~R~~D~~~~~~~-rqGri~f~~~~~GqEa~~vg~a~aL~-~~D~v~~--~yR~~g~ll 195 (364)
.|.+...+|.++|.++-.. +|. .+.+.. +.| +...++.|---+.|+....++ |.|.++. .|....+-+
T Consensus 10 ~P~dLk~ls~~eL~~La~E---iR~---~li~~vS~~G--GHlgsnLGvVELTiALH~VF~sP~D~~IwDVgHQaYpHKi 81 (627)
T COG1154 10 SPADLKKLSIEELPQLADE---IRE---FLLEVVSATG--GHLGSNLGVVELTIALHYVFDSPKDKLIWDVGHQAYPHKI 81 (627)
T ss_pred CHHHHhhCCHHHHHHHHHH---HHH---HHHHHhccCC--CccCCCcChhhhhHHHHHHhCCCCCCeEEecCcccchhHH
Confidence 3445668888888887654 342 233333 233 466688998888888888887 7887766 577777777
Q ss_pred hcCCCHHHHHHHHhcCCCCCCCCCCCccccCCCcc-cccccCCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccc
Q 017890 196 WRGYTLQQFANQVFANKADDGKGRQMPIHYGSKKL-NYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEG 274 (364)
Q Consensus 196 ~rG~~~~~~l~~~~g~~~~~~~Gr~mp~H~~~~~~-~~~~~sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG 274 (364)
..|.. +.|..++- -.+++..+...+. .-...+|+-++.|+.|+|+|.|..+++.++.||+++||||++-|
T Consensus 82 LTGR~--e~f~tlRq-------~~GlsGf~~r~ESe~D~f~~GHsSTSiSaalG~A~A~~~~g~~~~vvaVIGDGAlt~G 152 (627)
T COG1154 82 LTGRR--EQFDTLRQ-------KDGLSGFPKREESEHDWFGVGHSSTSISAALGMAKARDLKGEDRNVVAVIGDGALTGG 152 (627)
T ss_pred hcCch--hhcchhhh-------cCCCCCCCCcccCCCcccccCchHHHHHHHhhHHHHHHhcCCCCcEEEEECCccccch
Confidence 77752 44444432 1223333333332 22346799999999999999999999999999999999999999
Q ss_pred cHHHHHHHHH-HcCCCEEEEEEcCCccccccccccc-------C----------C--------c-----------cH---
Q 017890 275 DFHAALNFAA-VMEAPVVFICRNNGWAISTNISEQF-------R----------S--------D-----------GI--- 314 (364)
Q Consensus 275 ~~~EALn~Aa-~~~LPvIfVV~NNg~ais~~~~~~~-------~----------~--------~-----------~i--- 314 (364)
..+||||-|+ ..+-|+|+|+++|..+|+.++..-. . . + .+
T Consensus 153 mA~EALN~ag~~~~~~~iVILNDNeMSIs~nvGal~~~L~~l~~~~~y~~~~~~~kk~l~~~~~~~~~~~~r~e~~~K~l 232 (627)
T COG1154 153 MAFEALNNAGADLKSNLIVILNDNEMSISPNVGALSKHLARLRSGPFYQSLREGGKKVLSKVGPPLKRFAKRAEESIKGL 232 (627)
T ss_pred HHHHHHhhhhhccCCCEEEEEeCCCcccCCCccHHHHHHHHHhccchHHHHHHHHHHHHHhhchHHHHHHHHHHHhhhcc
Confidence 9999999998 4456999999999999987642100 0 0 0 00
Q ss_pred ---HHHHhhcCeEEE-EEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEee
Q 017890 315 ---VVKGRAYGIRSI-RVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLN 361 (364)
Q Consensus 315 ---a~~a~a~G~~~~-~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~ 361 (364)
...++.+|+..+ .|||||++++..+++.+++ -++|+||+++|-
T Consensus 233 ~~~~~lFeelGf~YiGPiDGHni~~Li~~Lk~~kd----~~gPvllHv~T~ 279 (627)
T COG1154 233 LVPGTLFEELGFNYIGPIDGHNLEELIPTLKNAKD----LKGPVLLHVVTK 279 (627)
T ss_pred cCchhhHHHhCCeeECCcCCCCHHHHHHHHHHHhc----CCCCEEEEEEec
Confidence 025678899998 5899999999999998877 589999999984
No 53
>cd02003 TPP_IolD Thiamine pyrophosphate (TPP) family, IolD subfamily, TPP-binding module; composed of proteins similar to Rhizobium leguminosarum bv. viciae IolD. IolD plays an important role in myo-inositol catabolism.
Probab=99.68 E-value=2e-16 Score=145.97 Aligned_cols=116 Identities=15% Similarity=0.202 Sum_probs=92.0
Q ss_pred cCCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcC-Ccccccccc-----c-
Q 017890 235 ISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNN-GWAISTNIS-----E- 307 (364)
Q Consensus 235 ~sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NN-g~ais~~~~-----~- 307 (364)
..|+||+++|.|+|+++|. ++++|||++|||++.++ .. +|.+|.++++|+++||.|| +|++..... .
T Consensus 46 ~~gsmG~~lpaAiGa~la~----p~~~vv~i~GDGsf~m~-~~-eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~ 119 (205)
T cd02003 46 GYSCMGYEIAAGLGAKLAK----PDREVYVLVGDGSYLML-HS-EIVTAVQEGLKIIIVLFDNHGFGCINNLQESTGSGS 119 (205)
T ss_pred CcchhhhHHHHHHHHHHhC----CCCeEEEEEccchhhcc-HH-HHHHHHHcCCCCEEEEEECCccHHHHHHHHHhcCcc
Confidence 3588999999999998874 68899999999999985 44 4999999999986655555 576532110 0
Q ss_pred -----------------ccCCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q 017890 308 -----------------QFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNF 362 (364)
Q Consensus 308 -----------------~~~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R 362 (364)
.....++.+.|++||+++++|+ +++++.+|+++|++ .++|+|||+++-+
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~d~~~~A~a~G~~~~~v~--~~~el~~al~~a~~----~~gp~lIeV~v~~ 185 (205)
T cd02003 120 FGTEFRDRDQESGQLDGALLPVDFAANARSLGARVEKVK--TIEELKAALAKAKA----SDRTTVIVIKTDP 185 (205)
T ss_pred ccchhcccccccccccCCCCCCCHHHHHHhCCCEEEEEC--CHHHHHHHHHHHHh----CCCCEEEEEEeec
Confidence 0124689999999999999996 79999999998875 5899999999854
No 54
>cd02001 TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) family, ComE and PpyrDC subfamily, TPP-binding module; composed of proteins similar to sulfopyruvate decarboxylase beta subunit (ComE) and phosphonopyruvate decarboxylase (Ppyr decarboxylase). Methanococcus jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits which, catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. Ppyr decarboxylase is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. Ppyr decarboxylase and ComDE require TPP and divalent metal cation cofactors.
Probab=99.68 E-value=3e-16 Score=139.50 Aligned_cols=114 Identities=11% Similarity=0.093 Sum_probs=91.7
Q ss_pred CCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHc-CCCEEEEEEcC-CcccccccccccCCcc
Q 017890 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVM-EAPVVFICRNN-GWAISTNISEQFRSDG 313 (364)
Q Consensus 236 sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~-~LPvIfVV~NN-g~ais~~~~~~~~~~~ 313 (364)
.|+||+++|.|+|+++|. + ++|||+.|||++++. ..| |.++.++ ++|+++||.|| +|++...........+
T Consensus 41 ~gsmG~~lp~AiGa~~a~----~-~~Vv~i~GDG~f~m~-~~e-l~t~~~~~~~~i~~vV~nN~~~g~~~~~~~~~~~~d 113 (157)
T cd02001 41 LGSMGLAGSIGLGLALGL----S-RKVIVVDGDGSLLMN-PGV-LLTAGEFTPLNLILVVLDNRAYGSTGGQPTPSSNVN 113 (157)
T ss_pred ecchhhHHHHHHHHHhcC----C-CcEEEEECchHHHhc-ccH-HHHHHHhcCCCEEEEEEeCccccccCCcCCCCCCCC
Confidence 799999999999999985 2 789999999999764 444 8899988 59998777555 5776432221222578
Q ss_pred HHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q 017890 314 IVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNF 362 (364)
Q Consensus 314 ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R 362 (364)
+++.|++||+++++|+ +++++.++++++++ .++|++||+.+.+
T Consensus 114 ~~~lA~a~G~~~~~v~--~~~el~~al~~a~~----~~gp~vi~v~i~~ 156 (157)
T cd02001 114 LEAWAAACGYLVLSAP--LLGGLGSEFAGLLA----TTGPTLLHAPIAP 156 (157)
T ss_pred HHHHHHHCCCceEEcC--CHHHHHHHHHHHHh----CCCCEEEEEEecC
Confidence 9999999999999996 79999999999886 5789999998753
No 55
>cd03372 TPP_ComE Thiamine pyrophosphate (TPP) family, ComE subfamily, TPP-binding module; composed of proteins similar to Methanococcus jannaschii sulfopyruvate decarboxylase beta subunit (ComE). M. jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits, which catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. ComDE requires TPP and divalent metal cation cofactors.
Probab=99.66 E-value=5.3e-16 Score=140.61 Aligned_cols=113 Identities=16% Similarity=0.250 Sum_probs=90.5
Q ss_pred CCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCC-CEEEE-EEcCCccccccccccc-CCc
Q 017890 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEA-PVVFI-CRNNGWAISTNISEQF-RSD 312 (364)
Q Consensus 236 sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~L-PvIfV-V~NNg~ais~~~~~~~-~~~ 312 (364)
.|+||+++|.|+|+++|.+ ++|||++|||++.++ . .+|.+|..+++ |+++| ++||+|++........ ...
T Consensus 41 ~g~mG~~lp~AiGaala~~-----~~vv~i~GDG~f~m~-~-~el~ta~~~~~~~l~vvV~NN~~~~~~~~~~~~~~~~~ 113 (179)
T cd03372 41 LGSMGLASSIGLGLALAQP-----RKVIVIDGDGSLLMN-L-GALATIAAEKPKNLIIVVLDNGAYGSTGNQPTHAGKKT 113 (179)
T ss_pred ccchhhHHHHHHHHHhcCC-----CcEEEEECCcHHHhC-H-HHHHHHHHcCCCCEEEEEEcCccccccCCCCCCCCCCC
Confidence 6999999999999999853 789999999999764 3 45888999996 67555 5666788764322222 246
Q ss_pred cHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q 017890 313 GIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNF 362 (364)
Q Consensus 313 ~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R 362 (364)
++++.|++||+++.+|+| +++++.+++++++ ++|+|||+.|.+
T Consensus 114 d~~~lA~a~G~~~~~v~~-~~~el~~al~~a~------~gp~lIev~~~~ 156 (179)
T cd03372 114 DLEAVAKACGLDNVATVA-SEEAFEKAVEQAL------DGPSFIHVKIKP 156 (179)
T ss_pred CHHHHHHHcCCCeEEecC-CHHHHHHHHHHhc------CCCEEEEEEEcC
Confidence 899999999999999997 7889888887775 589999999854
No 56
>cd03371 TPP_PpyrDC Thiamine pyrophosphate (TPP) family, PpyrDC subfamily, TPP-binding module; composed of proteins similar to phosphonopyruvate decarboxylase (PpyrDC) proteins. PpyrDC is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. These proteins require TPP and divalent metal cation cofactors.
Probab=99.66 E-value=8.8e-16 Score=140.33 Aligned_cols=115 Identities=19% Similarity=0.222 Sum_probs=91.2
Q ss_pred CCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCC-CEEEEEEcCC-cccccccccccCCcc
Q 017890 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEA-PVVFICRNNG-WAISTNISEQFRSDG 313 (364)
Q Consensus 236 sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~L-PvIfVV~NNg-~ais~~~~~~~~~~~ 313 (364)
+|+||+++|.|+|+++|. +++.|||++|||++.+. .++|.+++++++ |+++||.||+ |++...........+
T Consensus 47 ~g~mG~~lpaAiGaala~----p~~~Vv~i~GDG~f~m~--~~eL~ta~~~~l~~i~ivV~NN~~yg~~~~~~~~~~~~d 120 (188)
T cd03371 47 VGSMGHASQIALGIALAR----PDRKVVCIDGDGAALMH--MGGLATIGGLAPANLIHIVLNNGAHDSVGGQPTVSFDVS 120 (188)
T ss_pred cCccccHHHHHHHHHHhC----CCCcEEEEeCCcHHHhh--ccHHHHHHHcCCCCcEEEEEeCchhhccCCcCCCCCCCC
Confidence 499999999999999885 57899999999999863 355999999997 6776666664 665432111223468
Q ss_pred HHHHHhhcCeEE-EEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q 017890 314 IVVKGRAYGIRS-IRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNF 362 (364)
Q Consensus 314 ia~~a~a~G~~~-~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R 362 (364)
+++.|++||++. .+|+ +++++.+++++|++ .++|+|||+.+-+
T Consensus 121 ~~~~A~a~G~~~~~~v~--~~~el~~al~~a~~----~~~p~lIev~~~~ 164 (188)
T cd03371 121 LPAIAKACGYRAVYEVP--SLEELVAALAKALA----ADGPAFIEVKVRP 164 (188)
T ss_pred HHHHHHHcCCceEEecC--CHHHHHHHHHHHHh----CCCCEEEEEEecC
Confidence 999999999997 5787 79999999998875 5789999999854
No 57
>cd02005 TPP_PDC_IPDC Thiamine pyrophosphate (TPP) family, PDC_IPDC subfamily, TPP-binding module; composed of proteins similar to pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC). PDC, a key enzyme in alcoholic fermentation, catalyzes the conversion of pyruvate to acetaldehyde and CO2. It is able to utilize other 2-oxo acids as substrates. In plants and various plant-associated bacteria, IPDC plays a role in the indole-3-pyruvic acid (IPA) pathway, a tryptophan-dependent biosynthetic route to indole-3-acetaldehyde (IAA). IPDC catalyzes the decarboxylation of IPA to IAA. Both PDC and IPDC depend on TPP and Mg2+ as cofactors.
Probab=99.66 E-value=8.9e-16 Score=139.41 Aligned_cols=117 Identities=21% Similarity=0.265 Sum_probs=92.7
Q ss_pred cCCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEE-EEEEcCCccccccccc------
Q 017890 235 ISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVV-FICRNNGWAISTNISE------ 307 (364)
Q Consensus 235 ~sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvI-fVV~NNg~ais~~~~~------ 307 (364)
..++||+++|.|+|+++|. +++.||+++|||++.+ .++| |.+|+++++|++ +|++||+|++......
T Consensus 48 ~~g~mG~~l~~aiGaala~----~~~~vv~i~GDG~f~~-~~~e-l~ta~~~~~p~~ivV~nN~~~~~~~~~~~~~~~~~ 121 (183)
T cd02005 48 LWGSIGYSVPAALGAALAA----PDRRVILLVGDGSFQM-TVQE-LSTMIRYGLNPIIFLINNDGYTIERAIHGPEASYN 121 (183)
T ss_pred chhhHhhhHHHHHHHHHhC----CCCeEEEEECCchhhc-cHHH-HHHHHHhCCCCEEEEEECCCcEEEEEeccCCcCcc
Confidence 4589999999999999885 5689999999999977 5777 889999999875 5555666876432111
Q ss_pred ccCCccHHHHHhhcC----eEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q 017890 308 QFRSDGIVVKGRAYG----IRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNF 362 (364)
Q Consensus 308 ~~~~~~ia~~a~a~G----~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R 362 (364)
.....++.+.|++|| +++++|+ +++++.++++++++ ..++|+|||+++.|
T Consensus 122 ~~~~~d~~~ia~a~G~~~~~~~~~v~--~~~el~~al~~a~~---~~~~p~liev~~~~ 175 (183)
T cd02005 122 DIANWNYTKLPEVFGGGGGGLSFRVK--TEGELDEALKDALF---NRDKLSLIEVILPK 175 (183)
T ss_pred cCCCCCHHHHHHHhCCCccccEEEec--CHHHHHHHHHHHHh---cCCCcEEEEEEcCc
Confidence 122468999999999 7898886 79999999988876 24789999999876
No 58
>cd02008 TPP_IOR_alpha Thiamine pyrophosphate (TPP) family, IOR-alpha subfamily, TPP-binding module; composed of proteins similar to indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit. IOR catalyzes the oxidative decarboxylation of arylpyruvates, such as indolepyruvate or phenylpyruvate, which are generated by the transamination of aromatic amino acids, to the corresponding aryl acetyl-CoA.
Probab=99.65 E-value=2e-15 Score=136.29 Aligned_cols=117 Identities=19% Similarity=0.154 Sum_probs=92.4
Q ss_pred cCCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcC-Cccccccccc------
Q 017890 235 ISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNN-GWAISTNISE------ 307 (364)
Q Consensus 235 ~sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NN-g~ais~~~~~------ 307 (364)
..++||+++|.|+|+++|. ++++||+++|||++.+.. .++|.+|.++++|+++||.|| +|++......
T Consensus 49 ~~g~mG~gl~~AiGa~la~----p~~~Vv~i~GDG~f~~~g-~~eL~ta~~~~l~i~vvV~nN~~~g~~~~~~~~~~~~~ 123 (178)
T cd02008 49 TCTCMGASIGVAIGMAKAS----EDKKVVAVIGDSTFFHSG-ILGLINAVYNKANITVVILDNRTTAMTGGQPHPGTGKT 123 (178)
T ss_pred ccccCccHHHHHhhHHhhC----CCCCEEEEecChHHhhcc-HHHHHHHHHcCCCEEEEEECCcceeccCCCCCCCCccc
Confidence 4689999999999999885 578899999999997632 466999999999997666666 4654332111
Q ss_pred ---ccCCccHHHHHhhcCeEEEEE-eCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEe
Q 017890 308 ---QFRSDGIVVKGRAYGIRSIRV-DGNDALAVYTAVQAAREMAISEKRPVLVEVRL 360 (364)
Q Consensus 308 ---~~~~~~ia~~a~a~G~~~~~V-DGnD~~av~~a~~~A~~~ar~~~~P~LIea~T 360 (364)
.....++++.+++||+++++| +++|++++.+++++|++ .++|+||+++.
T Consensus 124 ~~~~~~~~d~~~~a~a~G~~~~~v~~~~~l~~~~~al~~a~~----~~gp~lI~v~~ 176 (178)
T cd02008 124 LTEPTTVIDIEALVRAIGVKRVVVVDPYDLKAIREELKEALA----VPGVSVIIAKR 176 (178)
T ss_pred ccCCCCccCHHHHHHHCCCCEEEecCccCHHHHHHHHHHHHh----CCCCEEEEEeC
Confidence 012368999999999999999 77888888888888875 57899999874
No 59
>PRK06163 hypothetical protein; Provisional
Probab=99.65 E-value=1.1e-15 Score=141.51 Aligned_cols=115 Identities=22% Similarity=0.282 Sum_probs=92.1
Q ss_pred CCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHc-CCCEEEEEEcC-Cccccccccc-ccCCc
Q 017890 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVM-EAPVVFICRNN-GWAISTNISE-QFRSD 312 (364)
Q Consensus 236 sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~-~LPvIfVV~NN-g~ais~~~~~-~~~~~ 312 (364)
.|+||+++|.|+|+++|. ++++|||++|||++++. .. +|.+|+++ ++|+++||.|| +|++...... .....
T Consensus 56 ~GsMG~glpaAiGaalA~----p~r~Vv~i~GDG~f~m~-~~-eL~Ta~~~~~lpi~ivV~NN~~yg~~~~~~~~~~~~~ 129 (202)
T PRK06163 56 LGSMGLAFPIALGVALAQ----PKRRVIALEGDGSLLMQ-LG-ALGTIAALAPKNLTIIVMDNGVYQITGGQPTLTSQTV 129 (202)
T ss_pred ecccccHHHHHHHHHHhC----CCCeEEEEEcchHHHHH-HH-HHHHHHHhcCCCeEEEEEcCCchhhcCCccCCCCCCC
Confidence 689999999999999884 67899999999999874 34 49999877 68998888777 5776322111 12346
Q ss_pred cHHHHHhhcCeE-EEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q 017890 313 GIVVKGRAYGIR-SIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNF 362 (364)
Q Consensus 313 ~ia~~a~a~G~~-~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R 362 (364)
|+++.|++||++ +++|+ +.+++..+++++++ .++|+|||+++.+
T Consensus 130 Df~~lA~a~G~~~~~~v~--~~~el~~al~~a~~----~~~p~lIeV~i~~ 174 (202)
T PRK06163 130 DVVAIARGAGLENSHWAA--DEAHFEALVDQALS----GPGPSFIAVRIDD 174 (202)
T ss_pred CHHHHHHHCCCceEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEecC
Confidence 899999999998 67887 78999999998875 5799999999864
No 60
>PLN02225 1-deoxy-D-xylulose-5-phosphate synthase
Probab=99.65 E-value=2.6e-15 Score=159.97 Aligned_cols=226 Identities=12% Similarity=0.072 Sum_probs=164.0
Q ss_pred CcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH-HhcCcccccccCCchhHHHHHHHhhcC-CCcEEEc--cCCchh
Q 017890 117 ELIKGSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEA-QRQGRFSFYLTTIGEEAINIGSAAALS-ADDFILP--QYREPG 192 (364)
Q Consensus 117 ~~~~~~~~~~~s~e~l~~ly~~M~~~R~~D~~~~~~-~rqGri~f~~~~~GqEa~~vg~a~aL~-~~D~v~~--~yR~~g 192 (364)
++-.|.+..+++.++|.+|-.. +|.+ ++... .+.| +...++.|-=-+.|+....++ |.|.|+. .|....
T Consensus 81 ~i~~P~dlk~L~~~eL~~La~E---iR~~--li~~v~s~~G--GHl~snLGvVELTvALH~VFd~p~DkiiwDvgHQ~Y~ 153 (701)
T PLN02225 81 SIETPLQLKNLSVKELKLLADE---IRTE--LHSVLWKKTQ--KSMNPSFAAIELTLALHYVFRAPVDNILWDAVEQTYA 153 (701)
T ss_pred hcCCHHHHhhCCHHHHHHHHHH---HHHH--HHHHhhcccC--CCcCCCccHHHHHHHHHHHhCCCCCceeeccccccch
Confidence 3444556678999999888664 4532 22333 2344 456689998888899999987 7897776 677777
Q ss_pred HHHhcCCCHHHHHHHHhcCCCCCCCCCCCccccCCCcc-cccccCCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCcc
Q 017890 193 VLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKKL-NYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGT 271 (364)
Q Consensus 193 ~ll~rG~~~~~~l~~~~g~~~~~~~Gr~mp~H~~~~~~-~~~~~sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~ 271 (364)
+-+..|.- +-|.. .+ -.+++..+...+. .-.+..|+-++.++.|+|+|.|..++++++.||+++|||++
T Consensus 154 HKiLTGR~--~~f~~--Rq------~~GlsGf~~r~ES~~D~f~~GHssTSiSaalG~a~ardl~g~~~~vvaVIGDGal 223 (701)
T PLN02225 154 HKVLTRRW--SAIPS--RQ------KNGISGVTSQLESEYDSFGTGHGCNSISAGLGLAVARDIKGKRDRVVAVIDNATI 223 (701)
T ss_pred hhHhcCCh--hhcCc--cc------cCCcCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhcCCCCcEEEEEcCcch
Confidence 77777752 22221 11 1123333333232 22346799999999999999999999999999999999999
Q ss_pred ccccHHHHHHHHHHcCCCEEEEEEcCCcccccc--------cccc--------------------------cCC--ccH-
Q 017890 272 SEGDFHAALNFAAVMEAPVVFICRNNGWAISTN--------ISEQ--------------------------FRS--DGI- 314 (364)
Q Consensus 272 ~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~--------~~~~--------------------------~~~--~~i- 314 (364)
.-|..+||||-|+..+-++|+|+++|+.+|+.+ +... .+. ..+
T Consensus 224 tgGma~EaLN~~g~~~~~livILNDN~mSi~~n~~~~~~~~vG~ls~~l~~l~~~~~y~~~~~~~~~~~~~~~~~~~~~~ 303 (701)
T PLN02225 224 TAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPNMEEGSKASISALSSIMSKIQSSKIFRKFRELAKAMTKRIGKGMYEWA 303 (701)
T ss_pred hhhhHHHHHhhhhccCCCEEEEEeCCCCCCCCCCCCccCCccchHHHHHHHHhccchHHHHHHHHHHHHHhCCHHHHHHH
Confidence 999999999999999999999999999999877 2100 000 000
Q ss_pred --------------H-HHHhhcCeEEE-EEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEee
Q 017890 315 --------------V-VKGRAYGIRSI-RVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLN 361 (364)
Q Consensus 315 --------------a-~~a~a~G~~~~-~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~ 361 (364)
. ..++.+|+.++ .|||||++++.++++++++. ..++|+||+++|-
T Consensus 304 ~~~~~~~k~~~~~~~~~lFe~lG~~Y~GpvDGHdi~~Li~~l~~~k~~--~~~~PvlvHv~T~ 364 (701)
T PLN02225 304 AKVDEYARGMVGPTGSTLFEELGLYYIGPVDGHNIEDLVCVLREVSSL--DSMGPVLVHVITE 364 (701)
T ss_pred HHHHHHhhhccCCCccCcHHHcCCeEECccCCCCHHHHHHHHHHHHcC--CCCCCEEEEEEec
Confidence 1 35678899998 58999999999999998763 1248999999985
No 61
>PF02775 TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; InterPro: IPR011766 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the C-terminal TPP binding domain of TPP enzymes.; GO: 0003824 catalytic activity, 0030976 thiamine pyrophosphate binding; PDB: 2WVA_V 1ZPD_F 2WVG_B 2WVH_B 3OE1_D 2NXW_A 2Q5L_B 2Q5Q_B 2Q5J_A 2Q5O_A ....
Probab=99.64 E-value=6.1e-16 Score=135.68 Aligned_cols=114 Identities=29% Similarity=0.425 Sum_probs=92.6
Q ss_pred cCCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCC-ccccccc----c---
Q 017890 235 ISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNG-WAISTNI----S--- 306 (364)
Q Consensus 235 ~sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg-~ais~~~----~--- 306 (364)
..++||+++|.|+|+++| .++++||+++|||++.+. ..| |.+|.++++|+++||.||+ |++.... .
T Consensus 26 ~~g~mG~~~~~aiGa~~a----~p~~~vv~i~GDG~f~~~-~~e-l~ta~~~~~~v~~vv~nN~~~~~~~~~~~~~~~~~ 99 (153)
T PF02775_consen 26 GFGSMGYALPAAIGAALA----RPDRPVVAITGDGSFLMS-LQE-LATAVRYGLPVVIVVLNNGGYGMTGGQQTPFGGGR 99 (153)
T ss_dssp TTT-TTTHHHHHHHHHHH----STTSEEEEEEEHHHHHHH-GGG-HHHHHHTTSSEEEEEEESSBSHHHHHHHHHTTSTC
T ss_pred CccccCCHHHhhhHHHhh----cCcceeEEecCCcceeec-cch-hHHHhhccceEEEEEEeCCcceEeccccccCcCcc
Confidence 468999999999999987 478999999999999875 444 9999999999977777665 6553211 1
Q ss_pred ---cc---cCCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEE
Q 017890 307 ---EQ---FRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEV 358 (364)
Q Consensus 307 ---~~---~~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea 358 (364)
.. ....++.+.+++||+++.+|+..|++++.+++++|++ .++|+|||+
T Consensus 100 ~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~~~~~el~~al~~a~~----~~gp~vIeV 153 (153)
T PF02775_consen 100 FSGVDGKTFPNPDFAALAEAFGIKGARVTTPDPEELEEALREALE----SGGPAVIEV 153 (153)
T ss_dssp HHSTBTTTSTTCGHHHHHHHTTSEEEEESCHSHHHHHHHHHHHHH----SSSEEEEEE
T ss_pred cccccccccccCCHHHHHHHcCCcEEEEccCCHHHHHHHHHHHHh----CCCcEEEEc
Confidence 11 3456899999999999999987777999999999985 689999996
No 62
>TIGR03846 sulfopy_beta sulfopyruvate decarboxylase, beta subunit. Nearly every member of this protein family is the beta subunit, or else the C-terminal region, of sulfopyruvate decarboxylase, in an archaeal species capable of coenzyme M biosynthesis. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=99.64 E-value=1.4e-15 Score=138.27 Aligned_cols=113 Identities=20% Similarity=0.331 Sum_probs=89.8
Q ss_pred CCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCC-CEEEEEEcCC-ccccccccccc-CCc
Q 017890 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEA-PVVFICRNNG-WAISTNISEQF-RSD 312 (364)
Q Consensus 236 sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~L-PvIfVV~NNg-~ais~~~~~~~-~~~ 312 (364)
.|+||+++|.|+|+++|. +++|||++|||+++++ . .+|.+|+.+++ |+++||.||+ |++........ ...
T Consensus 41 ~gsmG~~lpaAiGa~la~-----~~~Vv~i~GDG~f~m~-~-~el~ta~~~~~~pv~~vV~NN~~yg~~~~q~~~~~~~~ 113 (181)
T TIGR03846 41 LGSMGLASSIGLGLALAT-----DRTVIVIDGDGSLLMN-L-GVLPTIAAESPKNLILVILDNGAYGSTGNQPTPASRRT 113 (181)
T ss_pred ccccccHHHHHHHHHHcC-----CCcEEEEEcchHHHhh-h-hHHHHHHHhCCCCeEEEEEeCCccccccCcCCCCCCCC
Confidence 689999999999999884 6789999999999976 3 45999999995 9988887775 77644211111 246
Q ss_pred cHHHHHhhcCeEEEE-EeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q 017890 313 GIVVKGRAYGIRSIR-VDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNF 362 (364)
Q Consensus 313 ~ia~~a~a~G~~~~~-VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R 362 (364)
++++.|++||+++.+ |+ +++++.++++ +++ .++|+|||+.+.+
T Consensus 114 d~~~lA~a~G~~~~~~v~--~~~~l~~al~-a~~----~~~p~li~v~~~~ 157 (181)
T TIGR03846 114 DLELVAKAAGIRNVEKVA--DEEELRDALK-ALA----MKGPTFIHVKVKP 157 (181)
T ss_pred CHHHHHHHCCCCeEEEeC--CHHHHHHHHH-HHc----CCCCEEEEEEeCC
Confidence 899999999999998 75 7889988885 553 5789999999853
No 63
>PRK07524 hypothetical protein; Provisional
Probab=99.64 E-value=1.2e-15 Score=158.89 Aligned_cols=116 Identities=25% Similarity=0.354 Sum_probs=96.8
Q ss_pred CCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcC-Cccccc---------cc
Q 017890 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNN-GWAIST---------NI 305 (364)
Q Consensus 236 sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NN-g~ais~---------~~ 305 (364)
.|+||+++|.|+|+++|. ++++|||++|||++++. ..| |.+|+++++|+++||.|| +|++.. +.
T Consensus 406 ~g~mG~~lp~aiGa~lA~----p~~~vv~i~GDG~f~~~-~~e-l~ta~~~~lpi~~vV~NN~~~g~i~~~~~~~~~~~~ 479 (535)
T PRK07524 406 YGTLGYGLPAAIGAALGA----PERPVVCLVGDGGLQFT-LPE-LASAVEADLPLIVLLWNNDGYGEIRRYMVARDIEPV 479 (535)
T ss_pred cccccchHHHHHHHHHhC----CCCcEEEEEcchHHhhh-HHH-HHHHHHhCCCeEEEEEECCchHHHHHHHHHhcCCcc
Confidence 489999999999999884 78899999999999874 666 999999999998888777 686432 11
Q ss_pred ccccCCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeecc
Q 017890 306 SEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNFL 363 (364)
Q Consensus 306 ~~~~~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R~ 363 (364)
.......|+.+.|++||+++++|+ +++++.++++++++ .++|+|||+++.|+
T Consensus 480 ~~~~~~~d~~~~A~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~liev~~~~~ 531 (535)
T PRK07524 480 GVDPYTPDFIALARAFGCAAERVA--DLEQLQAALRAAFA----RPGPTLIEVDQACW 531 (535)
T ss_pred ccCCCCCCHHHHHHHCCCcEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEECCcc
Confidence 112234689999999999999997 89999999998876 58999999999986
No 64
>cd02009 TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) family, SHCHC synthase subfamily, TPP-binding module; composed of proteins similar to Escherichia coli 2-succinyl-6-hydroxyl-2,4-cyclohexadiene-1-carboxylic acid (SHCHC) synthase (also called MenD). SHCHC synthase plays a key role in the menaquinone biosynthetic pathway, converting isochorismate and 2-oxoglutarate to SHCHC, pyruvate and carbon dioxide. The enzyme requires TPP and a divalent metal cation for activity.
Probab=99.63 E-value=8.8e-16 Score=138.30 Aligned_cols=111 Identities=23% Similarity=0.282 Sum_probs=89.2
Q ss_pred CCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCC-cccccccc---------
Q 017890 237 SPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNG-WAISTNIS--------- 306 (364)
Q Consensus 237 g~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg-~ais~~~~--------- 306 (364)
+.||+++|.|+|+++|. +++|||++|||++.+. ..| |.+|.++++|+++||.||+ |++.....
T Consensus 51 g~mG~~l~~aiGa~la~-----~~~Vv~i~GDGsf~m~-~~e-L~ta~~~~l~v~ivVlNN~~~g~~~~~~~~~~~~~~~ 123 (175)
T cd02009 51 SGIDGTLSTALGIALAT-----DKPTVLLTGDLSFLHD-LNG-LLLGKQEPLNLTIVVINNNGGGIFSLLPQASFEDEFE 123 (175)
T ss_pred cchhhHHHHHHHHHhcC-----CCCEEEEEehHHHHHh-HHH-HHhccccCCCeEEEEEECCCCchheeccCCcccchhh
Confidence 78999999999999884 6789999999999975 444 9999999999977776665 66422111
Q ss_pred ccc---CCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEe
Q 017890 307 EQF---RSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRL 360 (364)
Q Consensus 307 ~~~---~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T 360 (364)
... ...++.+.|++||+++++|+ +++++.+++++|++ .++|+|||+++
T Consensus 124 ~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~lIev~v 174 (175)
T cd02009 124 RLFGTPQGLDFEHLAKAYGLEYRRVS--SLDELEQALESALA----QDGPHVIEVKT 174 (175)
T ss_pred hhhcCCCCCCHHHHHHHcCCCeeeCC--CHHHHHHHHHHHHh----CCCCEEEEEeC
Confidence 011 24689999999999999997 79999999998875 57999999986
No 65
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=99.61 E-value=2.9e-15 Score=157.47 Aligned_cols=120 Identities=23% Similarity=0.303 Sum_probs=99.6
Q ss_pred CCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcC-Cccccccc---------
Q 017890 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNN-GWAISTNI--------- 305 (364)
Q Consensus 236 sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NN-g~ais~~~--------- 305 (364)
.++||+++|.|+|+++| .++++|||++|||+++++...+++++|.++++|+++||.|| +|++....
T Consensus 429 ~gsmG~~lp~aiGa~la----~p~~~vv~i~GDG~f~~~~~e~~l~ta~~~~l~~~ivv~NN~~yg~~~~~~~~~~~~~~ 504 (569)
T PRK08327 429 AGGLGWALGAALGAKLA----TPDRLVIATVGDGSFIFGVPEAAHWVAERYGLPVLVVVFNNGGWLAVKEAVLEVYPEGY 504 (569)
T ss_pred CCCCCcchHHHHHHhhc----CCCCeEEEEecCcceeecCcHHHHHHHHHhCCCEEEEEEeCcccccchhHHhhhCcccc
Confidence 48999999999999876 47899999999999999765557999999999998888888 57753210
Q ss_pred --------cccc-CCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEee
Q 017890 306 --------SEQF-RSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLN 361 (364)
Q Consensus 306 --------~~~~-~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~ 361 (364)
.... ...++++.+++||+++.+|+ +.+++.+++++|++.++++++|+|||+.+-
T Consensus 505 ~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~al~~a~~~~~~~~gp~liev~v~ 567 (569)
T PRK08327 505 AARKGTFPGTDFDPRPDFAKIAEAFGGYGERVE--DPEELKGALRRALAAVRKGRRSAVLDVIVD 567 (569)
T ss_pred cccccccccccCCCCCCHHHHHHhCCCCceEeC--CHHHHHHHHHHHHHHHhcCCCcEEEEEEcc
Confidence 0111 34689999999999999998 899999999999987777778999999874
No 66
>TIGR01504 glyox_carbo_lig glyoxylate carboligase. Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.
Probab=99.61 E-value=2.2e-15 Score=158.96 Aligned_cols=119 Identities=24% Similarity=0.308 Sum_probs=95.6
Q ss_pred CCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCC-cccccccc-----c--
Q 017890 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNG-WAISTNIS-----E-- 307 (364)
Q Consensus 236 sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg-~ais~~~~-----~-- 307 (364)
.|+||+++|.|+|+++|. ++++||+++|||++++. ..| |.+|.++++|+++||.||+ |++..... .
T Consensus 417 ~gsmG~glpaaiGa~lA~----pdr~Vv~i~GDG~f~m~-~~E-L~Ta~r~~lpvv~iV~NN~~yg~i~~~q~~~~~~~~ 490 (588)
T TIGR01504 417 AGPLGWTIPAALGVCAAD----PKRNVVALSGDYDFQFM-IEE-LAVGAQHNIPYIHVLVNNAYLGLIRQAQRAFDMDYC 490 (588)
T ss_pred cccccchHhHHHhhhhhC----CCCcEEEEEcchHhhcc-HHH-HHHHHHhCCCeEEEEEeCCchHHHHHHHHHhccccc
Confidence 489999999999998884 78899999999999985 555 9999999999987777775 76532110 0
Q ss_pred ---cc----------CCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q 017890 308 ---QF----------RSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNF 362 (364)
Q Consensus 308 ---~~----------~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R 362 (364)
.. ...|+++.|++||+++.+|+ +++++.+++++|++.+.+.++|+|||+++-+
T Consensus 491 ~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~V~--~~~eL~~al~~a~~~~~~~~~p~lIeV~i~~ 556 (588)
T TIGR01504 491 VQLAFENINSSEVNGYGVDHVKVAEGLGCKAIRVF--KPEEIAPAFEQAKALMAEHRVPVVVEVILER 556 (588)
T ss_pred ceeeccccccccccCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHhhcccCCCcEEEEEEecc
Confidence 00 13689999999999999997 7999999999998654445899999999854
No 67
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=99.61 E-value=4.2e-15 Score=154.75 Aligned_cols=114 Identities=32% Similarity=0.438 Sum_probs=93.9
Q ss_pred cCCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCC-ccccccc--------
Q 017890 235 ISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNG-WAISTNI-------- 305 (364)
Q Consensus 235 ~sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg-~ais~~~-------- 305 (364)
.+|+||+++|.|+|+++|. ++++|||++|||+++++ . ++|.+|.++++|+++||.||+ |++....
T Consensus 405 ~~g~mG~~lp~aiGa~la~----p~~~vv~i~GDG~f~~~-~-~eL~ta~~~~lp~~~vv~NN~~~~~~~~~~~~~~~~~ 478 (530)
T PRK07092 405 ASGGLGYGLPAAVGVALAQ----PGRRVIGLIGDGSAMYS-I-QALWSAAQLKLPVTFVILNNGRYGALRWFAPVFGVRD 478 (530)
T ss_pred CCCcccchHHHHHHHHHhC----CCCeEEEEEeCchHhhh-H-HHHHHHHHhCCCcEEEEEeChHHHHHHHHHHhhCCCC
Confidence 3589999999999999884 57899999999999986 3 669999999999988888887 8764221
Q ss_pred --ccccCCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEe
Q 017890 306 --SEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRL 360 (364)
Q Consensus 306 --~~~~~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T 360 (364)
.......++++.+++||+++++|+ +..++.++++++++ .++|+|||+++
T Consensus 479 ~~~~~~~~~d~~~~a~~~G~~~~~v~--~~~~l~~al~~a~~----~~~p~liev~~ 529 (530)
T PRK07092 479 VPGLDLPGLDFVALARGYGCEAVRVS--DAAELADALARALA----ADGPVLVEVEV 529 (530)
T ss_pred CCCCCCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEc
Confidence 112245689999999999999998 57888888877764 68999999986
No 68
>PRK12474 hypothetical protein; Provisional
Probab=99.60 E-value=3.9e-15 Score=154.66 Aligned_cols=113 Identities=24% Similarity=0.279 Sum_probs=92.1
Q ss_pred CCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCC-ccccccc---------
Q 017890 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNG-WAISTNI--------- 305 (364)
Q Consensus 236 sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg-~ais~~~--------- 305 (364)
.|+||+++|.|+|+++|. ++++|||++|||++++. .+| |.+|.++++|+++||.||+ |++....
T Consensus 388 ~gsmG~glpaAiGa~lA~----p~r~vv~i~GDG~f~m~-~qE-L~Ta~r~~lpv~iiV~NN~~y~~i~~~~~~~~~~~~ 461 (518)
T PRK12474 388 GGSIGQGLPLAAGAAVAA----PDRKVVCPQGDGGAAYT-MQA-LWTMARENLDVTVVIFANRSYAILNGELQRVGAQGA 461 (518)
T ss_pred CCccCccHHHHHHHHHHC----CCCcEEEEEcCchhcch-HHH-HHHHHHHCCCcEEEEEcCCcchHHHHHHHhhcCCCC
Confidence 489999999999999885 78899999999999985 555 9999999999877777775 8653210
Q ss_pred cc------ccC--CccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEe
Q 017890 306 SE------QFR--SDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRL 360 (364)
Q Consensus 306 ~~------~~~--~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T 360 (364)
.. ... ..|+++.|++||+++.+|+ +++++.+++++|++ .++|+|||+++
T Consensus 462 ~~~~~~~~~~~~~~~d~~~lA~a~G~~~~rv~--~~~eL~~al~~a~~----~~~p~liev~~ 518 (518)
T PRK12474 462 GRNALSMLDLHNPELNWMKIAEGLGVEASRAT--TAEEFSAQYAAAMA----QRGPRLIEAMI 518 (518)
T ss_pred CccccccccCCCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHc----CCCCEEEEEEC
Confidence 00 011 2479999999999999998 68999999998875 57999999974
No 69
>cd03375 TPP_OGFOR Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor. In the TCA cycle, OGFOR catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA. In the reductive tricarboxylic acid cycle found in the anaerobic autotroph Hydrogenobacter thermophilus, OGFOR catalyzes the reductive carboxylation of succinyl-CoA to produce 2-oxoglutarate. Thauera aromatica OGFOR has been shown to provide reduced ferredoxin to benzoyl-CoA reductase, a key enzyme in the anaerobic metabolism of aromatic compounds. OGFOR is dependent on TPP and a divalent metal cation for activity.
Probab=99.60 E-value=8.5e-15 Score=134.21 Aligned_cols=114 Identities=20% Similarity=0.183 Sum_probs=88.2
Q ss_pred CCcccchhHHHHHHHHhhhccCCCeEEEEeCCCc-cccccHHHHHHHHHHcCCCEEEEEEcCC-ccccccccc-c-----
Q 017890 237 SPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGG-TSEGDFHAALNFAAVMEAPVVFICRNNG-WAISTNISE-Q----- 308 (364)
Q Consensus 237 g~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa-~~eG~~~EALn~Aa~~~LPvIfVV~NNg-~ais~~~~~-~----- 308 (364)
++||+++|.|+|+++|. ++++||++.|||+ ++++ ..| |.+|.++++|+++||.||+ |++...... .
T Consensus 51 g~mG~glpaAiGa~la~----p~r~Vv~i~GDGs~f~m~-~~e-L~ta~~~~lpv~iiVlnN~~yg~~~~~~~~~~~~~~ 124 (193)
T cd03375 51 TLHGRALAVATGVKLAN----PDLTVIVVSGDGDLAAIG-GNH-FIHAARRNIDITVIVHNNQIYGLTKGQASPTTPEGF 124 (193)
T ss_pred hhhccHHHHHHHHHHhC----CCCeEEEEeccchHhhcc-HHH-HHHHHHhCCCeEEEEEcCcccccCCCccCCCCCCCC
Confidence 78999999999998874 7899999999999 4664 444 9999999999987777775 665431110 0
Q ss_pred ----------cCCccHHHHHhhcCeEEE-EEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEe
Q 017890 309 ----------FRSDGIVVKGRAYGIRSI-RVDGNDALAVYTAVQAAREMAISEKRPVLVEVRL 360 (364)
Q Consensus 309 ----------~~~~~ia~~a~a~G~~~~-~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T 360 (364)
....++.+.+++||++.+ ++.-.++.++.+++++|++ .++|+|||+++
T Consensus 125 ~~~~~~~~~~~~~~d~~~iA~a~G~~~~~~~~v~~~~el~~al~~al~----~~gp~vIev~~ 183 (193)
T cd03375 125 KTKTTPYGNIEEPFNPLALALAAGATFVARGFSGDIKQLKEIIKKAIQ----HKGFSFVEVLS 183 (193)
T ss_pred cccCCCCCCCCCCCCHHHHHHHCCCCEEEEEecCCHHHHHHHHHHHHh----cCCCEEEEEEC
Confidence 012578999999999985 2233479999999999986 58899999975
No 70
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=99.60 E-value=4.1e-15 Score=156.03 Aligned_cols=116 Identities=28% Similarity=0.397 Sum_probs=95.5
Q ss_pred cCCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCC-ccccccccccc----
Q 017890 235 ISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNG-WAISTNISEQF---- 309 (364)
Q Consensus 235 ~sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg-~ais~~~~~~~---- 309 (364)
..|+||+++|.|+|+++|. +++.|||+.|||+|++. ..| |.+|.++++|+++||.||+ |++....++..
T Consensus 406 ~~GtMG~glPaAIGAkla~----P~r~Vv~i~GDG~F~m~-~qE-L~Ta~r~~lpv~ivv~nN~~~g~v~~~q~~~~~~~ 479 (550)
T COG0028 406 GLGTMGFGLPAAIGAKLAA----PDRKVVAIAGDGGFMMN-GQE-LETAVRYGLPVKIVVLNNGGYGMVRQWQELFYGGR 479 (550)
T ss_pred CCccccchHHHHHHHHhhC----CCCcEEEEEcccHHhcc-HHH-HHHHHHhCCCEEEEEEECCccccchHHHHHhcCCC
Confidence 4589999999999998774 78999999999999985 555 9999999999998888887 66543221111
Q ss_pred -----CCcc-HHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q 017890 310 -----RSDG-IVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNF 362 (364)
Q Consensus 310 -----~~~~-ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R 362 (364)
-... +.+.|++||+++++|+ +.+++.+++++|++ .++|+|||+.+.+
T Consensus 480 ~~~~~~~~~~f~klAea~G~~g~~v~--~~~el~~al~~al~----~~~p~lidv~id~ 532 (550)
T COG0028 480 YSGTDLGNPDFVKLAEAYGAKGIRVE--TPEELEEALEEALA----SDGPVLIDVVVDP 532 (550)
T ss_pred cceeecCCccHHHHHHHcCCeeEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEecC
Confidence 1223 9999999999999999 89999999999987 6899999999864
No 71
>PRK06154 hypothetical protein; Provisional
Probab=99.60 E-value=7.3e-15 Score=154.40 Aligned_cols=118 Identities=22% Similarity=0.149 Sum_probs=95.1
Q ss_pred CCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCC-ccccccccc-------
Q 017890 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNG-WAISTNISE------- 307 (364)
Q Consensus 236 sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg-~ais~~~~~------- 307 (364)
.|+||+++|.|+|+++|. ++++|||++|||++++. ..| |.+|.++++|+++||.||+ |++......
T Consensus 430 ~gsmG~glpaaiGa~la~----p~r~Vv~i~GDG~f~m~-~~E-L~Ta~r~~lpi~~vV~NN~~yg~~~~~~~~~~~~~~ 503 (565)
T PRK06154 430 TTQLGYGLGLAMGAKLAR----PDALVINLWGDAAFGMT-GMD-FETAVRERIPILTILLNNFSMGGYDKVMPVSTTKYR 503 (565)
T ss_pred CcccccHHHHHHHHHHhC----CCCcEEEEEcchHHhcc-HHH-HHHHHHhCCCeEEEEEECCccceeehhhhhhcCccc
Confidence 589999999999998884 68899999999999985 455 9999999999988877775 765321110
Q ss_pred -ccCCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q 017890 308 -QFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNF 362 (364)
Q Consensus 308 -~~~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R 362 (364)
.....|+++.|++||+++.+|+ +++++.+++++|++.++ .++|+|||+++.+
T Consensus 504 ~~~~~~df~~lA~a~G~~g~~V~--~~~el~~al~~a~~~~~-~~~p~lIev~v~~ 556 (565)
T PRK06154 504 ATDISGDYAAIARALGGYGERVE--DPEMLVPALLRALRKVK-EGTPALLEVITSE 556 (565)
T ss_pred ccCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhhcc-CCCeEEEEEEeCh
Confidence 0113589999999999999998 79999999999986432 4689999999754
No 72
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.59 E-value=6.3e-15 Score=155.02 Aligned_cols=115 Identities=18% Similarity=0.293 Sum_probs=93.9
Q ss_pred CCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCC-cccccccc--------
Q 017890 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNG-WAISTNIS-------- 306 (364)
Q Consensus 236 sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg-~ais~~~~-------- 306 (364)
.|+||+++|.|+|+++|. ++++||+++|||++++. .+| |.+|.++++|+++||.||+ |++.....
T Consensus 421 ~gsmG~~lp~aiGa~lA~----p~~~vv~i~GDG~f~~~-~~e-l~Ta~~~~lpi~~vV~NN~~~~~~~~~q~~~~~~~~ 494 (570)
T PRK06725 421 LGTMGFGFPAAIGAQLAK----EEELVICIAGDASFQMN-IQE-LQTIAENNIPVKVFIINNKFLGMVRQWQEMFYENRL 494 (570)
T ss_pred cccccchhhHHHhhHhhc----CCCeEEEEEecchhhcc-HHH-HHHHHHhCCCeEEEEEECCccHHHHHHHHHhcCCcc
Confidence 489999999999998874 68899999999999864 666 9999999999988888886 55432110
Q ss_pred --cccCCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q 017890 307 --EQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNF 362 (364)
Q Consensus 307 --~~~~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R 362 (364)
......++++.+++||+++.+|+ +++++.+++++|++ .++|+|||+++.+
T Consensus 495 ~~~~~~~~d~~~~a~a~G~~~~~v~--~~~~l~~al~~a~~----~~~p~liev~id~ 546 (570)
T PRK06725 495 SESKIGSPDFVKVAEAYGVKGLRAT--NSTEAKQVMLEAFA----HEGPVVVDFCVEE 546 (570)
T ss_pred ccCcCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEeCC
Confidence 11224689999999999999996 79999888888875 5899999999854
No 73
>PRK06546 pyruvate dehydrogenase; Provisional
Probab=99.59 E-value=9.2e-15 Score=154.00 Aligned_cols=115 Identities=24% Similarity=0.316 Sum_probs=94.6
Q ss_pred CCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCC-ccccc--------ccc
Q 017890 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNG-WAIST--------NIS 306 (364)
Q Consensus 236 sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg-~ais~--------~~~ 306 (364)
.|+||+++|.|+|+++|. ++++|||++|||+++++ ..| |.+|.++++|+++||.||+ |++.. +..
T Consensus 407 ~gsmG~~~paAiGa~la~----p~~~vv~i~GDGsf~~~-~~e-l~Ta~~~~lpv~~vV~NN~~~g~i~~~q~~~~~~~~ 480 (578)
T PRK06546 407 HGSMANALPHAIGAQLAD----PGRQVISMSGDGGLSML-LGE-LLTVKLYDLPVKVVVFNNSTLGMVKLEMLVDGLPDF 480 (578)
T ss_pred cccccchhHHHHHHHHhC----CCCcEEEEEcCchHhhh-HHH-HHHHHHhCCCeEEEEEECCccccHHHHHHhcCCCcc
Confidence 589999999999999885 67899999999999974 555 9999999999988888775 56531 100
Q ss_pred -cccCCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q 017890 307 -EQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNF 362 (364)
Q Consensus 307 -~~~~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R 362 (364)
......|+++.|++||+++.+|+ +++++.++++++++ .++|+|||+++-+
T Consensus 481 ~~~~~~~df~~lA~a~G~~~~~v~--~~~el~~al~~a~~----~~gp~lIev~~~~ 531 (578)
T PRK06546 481 GTDHPPVDYAAIAAALGIHAVRVE--DPKDVRGALREAFA----HPGPALVDVVTDP 531 (578)
T ss_pred cccCCCCCHHHHHHHCCCeeEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEeCC
Confidence 11235689999999999999998 79999999998876 5899999999853
No 74
>PRK05858 hypothetical protein; Provisional
Probab=99.59 E-value=7.7e-15 Score=153.28 Aligned_cols=115 Identities=19% Similarity=0.120 Sum_probs=94.3
Q ss_pred CCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcC-Ccccccccc--------
Q 017890 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNN-GWAISTNIS-------- 306 (364)
Q Consensus 236 sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NN-g~ais~~~~-------- 306 (364)
.|+||+++|.|+|+++|. ++++||+++|||++++. .+| |.+|.++++|+++||.|| +|++.....
T Consensus 406 ~gsmG~~lp~aiGa~la~----p~r~vv~i~GDG~f~~~-~~e-L~Ta~~~~lpi~ivV~NN~~y~~~~~~~~~~~~~~~ 479 (542)
T PRK05858 406 FGCLGTGPGYALAARLAR----PSRQVVLLQGDGAFGFS-LMD-VDTLVRHNLPVVSVIGNNGIWGLEKHPMEALYGYDV 479 (542)
T ss_pred ccccccchhHHHHHHHhC----CCCcEEEEEcCchhcCc-HHH-HHHHHHcCCCEEEEEEeCCchhhHHHHHHHhcCCcc
Confidence 489999999999998874 68899999999999985 566 999999999997777776 476532110
Q ss_pred --cccCCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q 017890 307 --EQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNF 362 (364)
Q Consensus 307 --~~~~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R 362 (364)
......|+++.|++||+++.+|+ +++++.+++++|++ .++|+|||+++-+
T Consensus 480 ~~~~~~~~d~~~lA~a~G~~~~~v~--~~~eL~~al~~a~~----~~~p~lIev~~~~ 531 (542)
T PRK05858 480 AADLRPGTRYDEVVRALGGHGELVT--VPAELGPALERAFA----SGVPYLVNVLTDP 531 (542)
T ss_pred ccccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh----CCCcEEEEEEECC
Confidence 11135689999999999999998 78999999999876 5899999999854
No 75
>KOG0450 consensus 2-oxoglutarate dehydrogenase, E1 subunit [Carbohydrate transport and metabolism]
Probab=99.58 E-value=2.3e-14 Score=149.31 Aligned_cols=236 Identities=16% Similarity=0.143 Sum_probs=189.5
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcccccccCCchhHHHHHHHhhc------CCCcEEEc-cCCchhHHH
Q 017890 124 FQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQ-GRFSFYLTTIGEEAINIGSAAAL------SADDFILP-QYREPGVLL 195 (364)
Q Consensus 124 ~~~~s~e~l~~ly~~M~~~R~~D~~~~~~~rq-Gri~f~~~~~GqEa~~vg~a~aL------~~~D~v~~-~yR~~g~ll 195 (364)
.-.++.|+-+-+|..+++.-.||+++...+.. .|. ...|.|.+.-|+...+ ..+++|++ .||++...|
T Consensus 243 ~~q~s~e~k~~il~RL~~st~FE~FLa~Kw~seKRF----GLEGcE~lIP~mK~iiDrS~elGVe~iviGMpHRGRLNvL 318 (1017)
T KOG0450|consen 243 PMQYSHEQKRVILDRLTRSTRFEEFLATKWPSEKRF----GLEGCEVLIPAMKTIIDRSSELGVESIVIGMPHRGRLNVL 318 (1017)
T ss_pred ccccCHHHHHHHHHHHHHhhHHHHHHhhhCCccccc----cccchhhhhhHHHHHhhhhhhcCchheEecCCccchhHHH
Confidence 34789999999999999999999999887753 332 2588999888876654 45789999 599998777
Q ss_pred hc--CCCHHHHHHHHhcCCCCCCCCC-CCccccCCC----------c--ccccccCCCcccchhHHHHHHHHhhhc----
Q 017890 196 WR--GYTLQQFANQVFANKADDGKGR-QMPIHYGSK----------K--LNYITISSPIATQLPQAVGVAYSLKME---- 256 (364)
Q Consensus 196 ~r--G~~~~~~l~~~~g~~~~~~~Gr-~mp~H~~~~----------~--~~~~~~sg~LG~~lp~AvG~A~A~k~~---- 256 (364)
+. -.++++++.+|-|.... -.|+ ....|.+.. . +.++.+.++|...-|+.+|-..|.+.-
T Consensus 319 ~NVvRKpl~qIfseF~g~~~~-DeGSGDVKYHLG~~~~R~~r~s~k~i~LslVANPSHLEA~DPVV~GKtrA~q~y~~D~ 397 (1017)
T KOG0450|consen 319 ANVVRKPLEQIFSEFSGLEAA-DEGSGDVKYHLGMYYERPNRVSGKNITLSLVANPSHLEAVDPVVMGKTRAEQFYTGDE 397 (1017)
T ss_pred HHHHhhHHHHHHHhccCCCCC-cCCCCceeeeeccccccccccCCceeEEEEecCchhhcccCceeechHHHHHHhcccc
Confidence 74 37899999999884432 2243 356666531 1 124667899999999999999998753
Q ss_pred -cCCCeEEEEeCCCcc-ccccHHHHHHHHHHcCC---CEEEEEEcCCcccccccccccCCccHHHHHhhcCeEEEEEeCC
Q 017890 257 -KKDACAVAYTGDGGT-SEGDFHAALNFAAVMEA---PVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGN 331 (364)
Q Consensus 257 -~~~~~vv~~~GDGa~-~eG~~~EALn~Aa~~~L---PvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~~~~VDGn 331 (364)
+.+...|.+.||++| .+|.++|.+.+...-+. ..|.||.||+.+..|-.....+.+...+.|++.++|.+.|+++
T Consensus 398 ~~~k~m~ILiHGDaaFAgQGVVyET~hls~LP~YtT~GTvHvVvNNQIgFTTDPR~aRSspYcTDvar~v~aPIFHVNaD 477 (1017)
T KOG0450|consen 398 EGKKVMGILIHGDAAFAGQGVVYETFHLSDLPSYTTGGTVHVVVNNQIGFTTDPRFARSSPYCTDVARVVNAPIFHVNAD 477 (1017)
T ss_pred ccceeEEEEEecchhhccCceEEEeeccccCCCcccCCeEEEEEccccccccCcccccCCCCchhHHHHhCCCeEeecCC
Confidence 344578999999998 79999998887665443 5799999999999886655556666778999999999999999
Q ss_pred CHHHHHHHHHHHHHHhhcCCCcEEEEEEeeccC
Q 017890 332 DALAVYTAVQAAREMAISEKRPVLVEVRLNFLW 364 (364)
Q Consensus 332 D~~av~~a~~~A~~~ar~~~~P~LIea~T~R~~ 364 (364)
|++||.-+.+-|.+.....++.++|++++||++
T Consensus 478 D~EAV~~vc~vAAeWR~tFh~DvVVDlVcyRR~ 510 (1017)
T KOG0450|consen 478 DPEAVMHVCKVAAEWRKTFHKDVVVDLVCYRRH 510 (1017)
T ss_pred ChHHHHHHHHHHHHHHHHhccCeEEEEEEEeec
Confidence 999999999999999888999999999999975
No 76
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.58 E-value=7.2e-15 Score=155.32 Aligned_cols=115 Identities=23% Similarity=0.329 Sum_probs=94.2
Q ss_pred CCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCC-ccccccc---------
Q 017890 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNG-WAISTNI--------- 305 (364)
Q Consensus 236 sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg-~ais~~~--------- 305 (364)
.|+||+++|.|+|+++|. ++++||+++|||++++. ..| |.+|.++++|+++||.||+ |++....
T Consensus 429 ~gsmG~glpaaiGa~lA~----p~r~Vv~i~GDG~f~m~-~~E-L~Ta~r~~lpvi~vV~NN~~y~~i~~~q~~~~~~~~ 502 (595)
T PRK09107 429 LGTMGYGLPAALGVQIAH----PDALVIDIAGDASIQMC-IQE-MSTAVQYNLPVKIFILNNQYMGMVRQWQQLLHGNRL 502 (595)
T ss_pred chhhhhhHHHHHHHHHhC----CCCeEEEEEcCchhhcc-HHH-HHHHHHhCCCeEEEEEeCCccHHHHHHHHHHhCCcc
Confidence 489999999999999874 78899999999999984 555 9999999999988888776 7653210
Q ss_pred cccc--CCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q 017890 306 SEQF--RSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNF 362 (364)
Q Consensus 306 ~~~~--~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R 362 (364)
.... ...|+++.|++||+++.+|+ +++++.+++++|.+ .++|+|||+.+.+
T Consensus 503 ~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~lIeV~i~~ 555 (595)
T PRK09107 503 SHSYTEAMPDFVKLAEAYGAVGIRCE--KPGDLDDAIQEMID----VDKPVIFDCRVAN 555 (595)
T ss_pred ccccCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh----CCCCEEEEEEecC
Confidence 1111 23589999999999999997 79999999998876 4789999999864
No 77
>PRK09124 pyruvate dehydrogenase; Provisional
Probab=99.58 E-value=1.5e-14 Score=152.08 Aligned_cols=116 Identities=26% Similarity=0.295 Sum_probs=93.7
Q ss_pred cCCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcC-Cccccccc--------
Q 017890 235 ISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNN-GWAISTNI-------- 305 (364)
Q Consensus 235 ~sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NN-g~ais~~~-------- 305 (364)
..|+||+++|.|+|+++|. ++++|||++|||++++. ..| |.+|.++++|+++||.|| +|++....
T Consensus 406 ~~G~mG~~lpaAiGa~la~----p~r~vv~i~GDGsf~m~-~~e-L~Ta~~~~lpv~ivV~NN~~~g~i~~~~~~~~~~~ 479 (574)
T PRK09124 406 NHGSMANAMPQALGAQAAH----PGRQVVALSGDGGFSML-MGD-FLSLVQLKLPVKIVVFNNSVLGFVAMEMKAGGYLT 479 (574)
T ss_pred CcccccchHHHHHHHHHhC----CCCeEEEEecCcHHhcc-HHH-HHHHHHhCCCeEEEEEeCCccccHHHHHHhcCCcc
Confidence 4589999999999998874 67899999999999984 566 999999999987776666 47763110
Q ss_pred -ccccCCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q 017890 306 -SEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNF 362 (364)
Q Consensus 306 -~~~~~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R 362 (364)
.......|+++.|++||+++.+|+ +++++.+++++|++ .++|+|||+++-+
T Consensus 480 ~~~~~~~~d~~~lA~a~G~~~~~v~--~~~eL~~al~~a~~----~~~p~lIev~i~~ 531 (574)
T PRK09124 480 DGTDLHNPDFAAIAEACGITGIRVE--KASELDGALQRAFA----HDGPALVDVVTAK 531 (574)
T ss_pred ccCcCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEecC
Confidence 001234589999999999999997 79999999998875 5789999999853
No 78
>PRK11269 glyoxylate carboligase; Provisional
Probab=99.58 E-value=7e-15 Score=155.11 Aligned_cols=120 Identities=24% Similarity=0.290 Sum_probs=96.7
Q ss_pred cCCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCC-cccccccc-------
Q 017890 235 ISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNG-WAISTNIS------- 306 (364)
Q Consensus 235 ~sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg-~ais~~~~------- 306 (364)
..|+||+++|.|+|+++|. +++.|||++|||++++. ..| |.+|.++++|+++||.||+ |++.....
T Consensus 417 ~~G~mG~glpaAiGa~la~----p~r~Vv~i~GDG~f~m~-~~e-L~Ta~~~~lpv~~vV~NN~~~g~i~~~~~~~~~~~ 490 (591)
T PRK11269 417 QAGPLGWTIPAALGVRAAD----PDRNVVALSGDYDFQFL-IEE-LAVGAQFNLPYIHVLVNNAYLGLIRQAQRAFDMDY 490 (591)
T ss_pred ccccccchhhhHHhhhhhC----CCCcEEEEEccchhhcC-HHH-HHHHHHhCCCeEEEEEeCCchhHHHHHHHHhccCc
Confidence 3589999999999998874 67899999999999984 555 9999999999988888776 76432110
Q ss_pred ---ccc----------CCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q 017890 307 ---EQF----------RSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNF 362 (364)
Q Consensus 307 ---~~~----------~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R 362 (364)
..+ ...|+++.|++||+++.+|+ +++++.+|+++|.+...+.++|+|||+++.+
T Consensus 491 ~~~~~~~~~~~~~~~~~~~df~~lA~a~G~~~~~v~--~~~eL~~al~~a~~~~~~~~gp~lieV~v~~ 557 (591)
T PRK11269 491 CVQLAFENINSPELNGYGVDHVKVAEGLGCKAIRVF--KPEDIAPALEQAKALMAEFRVPVVVEVILER 557 (591)
T ss_pred cceeeccccccccccCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhhcccCCCcEEEEEEecc
Confidence 000 13689999999999999996 7999999999998654446899999999853
No 79
>PRK08266 hypothetical protein; Provisional
Probab=99.58 E-value=9.5e-15 Score=152.28 Aligned_cols=115 Identities=26% Similarity=0.356 Sum_probs=93.5
Q ss_pred CCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcC-Ccccccccc--------
Q 017890 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNN-GWAISTNIS-------- 306 (364)
Q Consensus 236 sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NN-g~ais~~~~-------- 306 (364)
.|+||+++|.|+|++++ .++++|||++|||+++++ . ++|.+|.++++|+++||.|| +|++....+
T Consensus 401 ~GsmG~~lp~aiGa~la----~p~~~vv~v~GDG~f~~~-~-~eL~ta~~~~lpv~ivv~NN~~y~~~~~~~~~~~~~~~ 474 (542)
T PRK08266 401 QGTLGYGFPTALGAKVA----NPDRPVVSITGDGGFMFG-V-QELATAVQHNIGVVTVVFNNNAYGNVRRDQKRRFGGRV 474 (542)
T ss_pred CcccccHHHHHHHHHHh----CCCCcEEEEEcchhhhcc-H-HHHHHHHHhCCCeEEEEEeCCcchHHHHHHHHhcCCCc
Confidence 48999999999999877 468899999999999986 4 55999999999998877777 587532111
Q ss_pred --cccCCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q 017890 307 --EQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNF 362 (364)
Q Consensus 307 --~~~~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R 362 (364)
......++++.|++||+++.+|+ +.+++.++++++.+ .++|+|||++++|
T Consensus 475 ~~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~liev~i~~ 526 (542)
T PRK08266 475 VASDLVNPDFVKLAESFGVAAFRVD--SPEELRAALEAALA----HGGPVLIEVPVPR 526 (542)
T ss_pred ccCCCCCCCHHHHHHHcCCeEEEeC--CHHHHHHHHHHHHh----CCCcEEEEEEecC
Confidence 01123589999999999999998 58899998888875 5789999999975
No 80
>TIGR02418 acolac_catab acetolactate synthase, catabolic. Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family.
Probab=99.57 E-value=1.2e-14 Score=151.60 Aligned_cols=115 Identities=23% Similarity=0.383 Sum_probs=93.4
Q ss_pred CCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcC-Cccccccc-----cc--
Q 017890 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNN-GWAISTNI-----SE-- 307 (364)
Q Consensus 236 sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NN-g~ais~~~-----~~-- 307 (364)
.++||+++|.|+|+++|. ++++||+++|||++++. ..| |.+|.++++|+++||.|| +|++.... ..
T Consensus 407 ~g~mG~~lpaaiGa~la~----~~~~vv~i~GDGsf~m~-~~e-L~Ta~~~~lpi~ivV~NN~~y~~~~~~~~~~~~~~~ 480 (539)
T TIGR02418 407 MQTLGVALPWAIGAALVR----PNTKVVSVSGDGGFLFS-SME-LETAVRLKLNIVHIIWNDNGYNMVEFQEEMKYQRSS 480 (539)
T ss_pred ccccccHHHHHHHHHHhC----CCCcEEEEEcchhhhch-HHH-HHHHHHhCCCeEEEEEECCcchHHHHHHHHhcCCcc
Confidence 479999999999999884 67899999999999984 555 999999999997776666 57653211 10
Q ss_pred --ccCCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q 017890 308 --QFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNF 362 (364)
Q Consensus 308 --~~~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R 362 (364)
.....|+.+.|++||+++.+|+ +++++.+++++|++ .++|+|||+++.+
T Consensus 481 ~~~~~~~d~~~lA~a~G~~~~~V~--~~~eL~~al~~a~~----~~~p~lIev~v~~ 531 (539)
T TIGR02418 481 GVDFGPIDFVKYAESFGAKGLRVE--SPDQLEPTLRQAME----VEGPVVVDIPVDY 531 (539)
T ss_pred cccCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh----CCCCEEEEEEecC
Confidence 1234689999999999999998 78999999998876 5789999999864
No 81
>cd03376 TPP_PFOR_porB_like Thiamine pyrophosphate (TPP family), PFOR porB-like subfamily, TPP-binding module; composed of proteins similar to the beta subunit (porB) of the Helicobacter pylori four-subunit pyruvate ferredoxin oxidoreductase (PFOR), which are also found in archaea and some hyperthermophilic bacteria. PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The 36-kDa porB subunit contains the binding sites for the cofactors, TPP and a divalent metal cation, which are required for activity.
Probab=99.57 E-value=1.2e-14 Score=137.33 Aligned_cols=118 Identities=22% Similarity=0.291 Sum_probs=91.1
Q ss_pred cccCCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCcc-ccccHHHHHHHHHHcCCCEEEEEEcCC-ccccc----ccc
Q 017890 233 ITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGT-SEGDFHAALNFAAVMEAPVVFICRNNG-WAIST----NIS 306 (364)
Q Consensus 233 ~~~sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~-~eG~~~EALn~Aa~~~LPvIfVV~NNg-~ais~----~~~ 306 (364)
+...++||+++|.|+|++.+ .++++|||+.|||++ +++ +.| |.+|.++++|+++||.||+ |++.. +..
T Consensus 58 ~~~~gsmG~GlpaAiGa~~a----~p~r~VV~i~GDG~~~~m~-~~e-L~ta~~~~~pv~~vVlNN~~yg~tg~q~~~~~ 131 (235)
T cd03376 58 FENAAAVASGIEAALKALGR----GKDITVVAFAGDGGTADIG-FQA-LSGAAERGHDILYICYDNEAYMNTGIQRSGST 131 (235)
T ss_pred hcCHHHHHHHHHHHHHHhcc----CCCCeEEEEEcCchHHhhH-HHH-HHHHHHcCCCeEEEEECCcccccCCCCCCCCC
Confidence 33457999999999998554 478899999999995 665 444 9999999999998888886 66311 100
Q ss_pred ----c-------------ccCCccHHHHHhhcCeEEEE-EeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEe
Q 017890 307 ----E-------------QFRSDGIVVKGRAYGIRSIR-VDGNDALAVYTAVQAAREMAISEKRPVLVEVRL 360 (364)
Q Consensus 307 ----~-------------~~~~~~ia~~a~a~G~~~~~-VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T 360 (364)
. .....|+++.|++||++++. ++-.+++++.+++++|++ .++|+|||+.+
T Consensus 132 ~~~~~~~~~~~g~~~~~~~~~~~d~~~iA~a~G~~~~~~~~v~~~~el~~al~~a~~----~~gP~lIev~~ 199 (235)
T cd03376 132 PYGAWTTTTPVGKVSFGKKQPKKDLPLIMAAHNIPYVATASVAYPEDLYKKVKKALS----IEGPAYIHILS 199 (235)
T ss_pred CCCCEeecCCCCccccccccccCCHHHHHHHcCCcEEEEEcCCCHHHHHHHHHHHHh----CCCCEEEEEEC
Confidence 0 11335899999999999873 455689999999999886 47899999975
No 82
>PRK07586 hypothetical protein; Validated
Probab=99.57 E-value=1.1e-14 Score=150.95 Aligned_cols=113 Identities=27% Similarity=0.262 Sum_probs=90.5
Q ss_pred CCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcC-Cccccccc---------
Q 017890 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNN-GWAISTNI--------- 305 (364)
Q Consensus 236 sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NN-g~ais~~~--------- 305 (364)
.|+||+++|.|+|+++|. ++++|||++|||++++. ..| |.+|.++++|+++||.|| +|++....
T Consensus 384 ~g~mG~~lpaaiGa~lA~----p~r~Vv~i~GDGsf~m~-~~E-L~Ta~~~~lpv~ivV~NN~~y~~~~~~~~~~~~~~~ 457 (514)
T PRK07586 384 GGAIGQGLPLATGAAVAC----PDRKVLALQGDGSAMYT-IQA-LWTQARENLDVTTVIFANRAYAILRGELARVGAGNP 457 (514)
T ss_pred CcccccHHHHHHHHHHhC----CCCeEEEEEechHHHhH-HHH-HHHHHHcCCCCEEEEEeCchhHHHHHHHHHhcCCCC
Confidence 489999999999999884 68899999999999984 444 999999999987766655 58753210
Q ss_pred -c--c---cc--CCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEe
Q 017890 306 -S--E---QF--RSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRL 360 (364)
Q Consensus 306 -~--~---~~--~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T 360 (364)
. . .. ...|+++.|++||+++++|+ ++.++.+++++|++ .++|+|||+++
T Consensus 458 ~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~V~--~~~el~~al~~a~~----~~~p~liev~~ 514 (514)
T PRK07586 458 GPRALDMLDLDDPDLDWVALAEGMGVPARRVT--TAEEFADALAAALA----EPGPHLIEAVV 514 (514)
T ss_pred CccccccccCCCCCCCHHHHHHHCCCcEEEeC--CHHHHHHHHHHHHc----CCCCEEEEEEC
Confidence 0 0 01 23589999999999999997 68899999988875 57999999974
No 83
>PRK07064 hypothetical protein; Provisional
Probab=99.56 E-value=1.7e-14 Score=150.42 Aligned_cols=115 Identities=25% Similarity=0.349 Sum_probs=92.7
Q ss_pred cCCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcC-Cccccccc--------
Q 017890 235 ISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNN-GWAISTNI-------- 305 (364)
Q Consensus 235 ~sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NN-g~ais~~~-------- 305 (364)
..|+||+++|.|+|+++|. +++.||+++|||++++. ..| |.+|.++++|+++||.|| +|++....
T Consensus 403 ~~g~mG~~lpaAiGa~lA~----p~~~vv~i~GDGsf~m~-~~e-L~Ta~~~~lpv~ivV~NN~~yg~~~~~~~~~~~~~ 476 (544)
T PRK07064 403 LGGGIGQGLAMAIGAALAG----PGRKTVGLVGDGGLMLN-LGE-LATAVQENANMVIVLMNDGGYGVIRNIQDAQYGGR 476 (544)
T ss_pred CCCccccccchhhhhhhhC----cCCcEEEEEcchHhhhh-HHH-HHHHHHhCCCeEEEEEeCChhHHHHHHHHHhcCCc
Confidence 3478999999999999884 67899999999999984 454 999999999997776666 57753211
Q ss_pred --ccccCCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEee
Q 017890 306 --SEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLN 361 (364)
Q Consensus 306 --~~~~~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~ 361 (364)
.......++++.|++||+++.+|+ +++++.+++++|++ .++|+|||+.+.
T Consensus 477 ~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~eL~~al~~a~~----~~~p~lIeV~~~ 528 (544)
T PRK07064 477 RYYVELHTPDFALLAASLGLPHWRVT--SADDFEAVLREALA----KEGPVLVEVDML 528 (544)
T ss_pred cccccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHc----CCCCEEEEEEcc
Confidence 011234689999999999999997 68899999998875 578999999985
No 84
>TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase. This family consists of examples of phosphonopyruvate an decarboxylase enzyme that produces phosphonoacetaldehyde (Pald), the second step in the biosynthesis phosphonate-containing compounds. Since the preceding enzymate step, PEP phosphomutase (AepX, TIGR02320) favors the substrate PEP energetically, the decarboxylase is required to drive the reaction in the direction of phosphonate production. Pald is a precursor of natural products including antibiotics like bialaphos and phosphonothricin in Streptomyces species, phosphonate-modified molecules such as the polysaccharide B of Bacteroides fragilis, the phosphonolipids of Tetrahymena pyroformis, the glycosylinositolphospholipids of Trypanosoma cruzi. This gene generally occurs in prokaryotic organisms adjacent to the gene for AepX. Most often an aminotansferase (aepZ) is also present which leads to the production of the most common phosphonate compound, 2-aminoethylphosphonate (A
Probab=99.56 E-value=9.2e-14 Score=139.00 Aligned_cols=161 Identities=19% Similarity=0.203 Sum_probs=111.7
Q ss_pred hhHHHHHHHhhcCCCcEEEccCCchhHHHhcCCCHHHHHHHHhcCCCCCCCCCCCccccCCCcccccccCCCcccchhHH
Q 017890 167 EEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQA 246 (364)
Q Consensus 167 qEa~~vg~a~aL~~~D~v~~~yR~~g~ll~rG~~~~~~l~~~~g~~~~~~~Gr~mp~H~~~~~~~~~~~sg~LG~~lp~A 246 (364)
.|.+.-.+...+.++|.|+.. .|+...+++ .+. .+.++.|+ ..++ ..|+||+++|.|
T Consensus 174 r~~ai~~i~~~l~~~~iVV~~---------~G~~s~el~-~~~--------~~~~~~~~----~~f~-~~GsMG~a~p~A 230 (361)
T TIGR03297 174 REEAIAAILDHLPDNTVIVST---------TGKTSRELY-ELR--------DRIGQGHA----RDFL-TVGSMGHASQIA 230 (361)
T ss_pred HHHHHHHHHHhCCCCCEEEEC---------CCCCcHHHH-Hhh--------cccccCCC----CceE-eechhhhHHHHH
Confidence 344444566667777877765 233333332 221 23344443 2222 359999999999
Q ss_pred HHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCC-CEEEEEEcCC-cccccccccccCCccHHHHHhhcCe-
Q 017890 247 VGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEA-PVVFICRNNG-WAISTNISEQFRSDGIVVKGRAYGI- 323 (364)
Q Consensus 247 vG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~L-PvIfVV~NNg-~ais~~~~~~~~~~~ia~~a~a~G~- 323 (364)
+|+|+|. ++++|||+.|||++.+. ..+|.+++.+++ |+++||.||+ |+............++.+.|++||+
T Consensus 231 lG~ala~----p~r~Vv~i~GDGsflm~--~~eL~t~~~~~~~nli~VVlNNg~~~~~g~q~~~~~~~d~~~iA~a~G~~ 304 (361)
T TIGR03297 231 LGLALAR----PDQRVVCLDGDGAALMH--MGGLATIGTQGPANLIHVLFNNGAHDSVGGQPTVSQHLDFAQIAKACGYA 304 (361)
T ss_pred HHHHHHC----CCCCEEEEEChHHHHHH--HHHHHHHHHhCCCCeEEEEEcCccccccCCcCCCCCCCCHHHHHHHCCCc
Confidence 9999885 57899999999999863 345899999997 8988888776 5543221111234689999999997
Q ss_pred EEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q 017890 324 RSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNF 362 (364)
Q Consensus 324 ~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R 362 (364)
.+++|+ +.+++.++++++++ .++|+|||+++-+
T Consensus 305 ~~~~v~--~~~eL~~al~~a~~----~~gp~lIeV~v~~ 337 (361)
T TIGR03297 305 KVYEVS--TLEELETALTAASS----ANGPRLIEVKVRP 337 (361)
T ss_pred eEEEeC--CHHHHHHHHHHHHh----CCCcEEEEEEecC
Confidence 567765 89999999998865 5789999998743
No 85
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase. Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.
Probab=99.56 E-value=2.1e-14 Score=151.13 Aligned_cols=116 Identities=17% Similarity=0.295 Sum_probs=93.0
Q ss_pred CCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcC-Cccccccc-----c---
Q 017890 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNN-GWAISTNI-----S--- 306 (364)
Q Consensus 236 sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NN-g~ais~~~-----~--- 306 (364)
.|+||+++|.|+|+++|. ++++||+++|||++++. ..| |.+|.++++|+++||.|| +|++.... .
T Consensus 407 ~gsmG~glpaAiGa~la~----p~r~Vv~i~GDGsf~m~-~~e-L~Tavr~~lpi~~VV~NN~~yg~i~~~~~~~~~~~~ 480 (575)
T TIGR02720 407 FATMGVGVPGAIAAKLNY----PDRQVFNLAGDGAFSMT-MQD-LLTQVQYHLPVINIVFSNCTYGFIKDEQEDTNQPLI 480 (575)
T ss_pred cchhhchHHHHHHHHHhC----CCCcEEEEEcccHHHhh-HHH-HHHHHHhCCCeEEEEEeCCccHHHHHHHHHhCCCcc
Confidence 489999999999998874 68899999999999984 555 999999999987776555 58753210 0
Q ss_pred -cccCCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEee
Q 017890 307 -EQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLN 361 (364)
Q Consensus 307 -~~~~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~ 361 (364)
..+...|+++.|++||+++.+|+ +.+++.++++++++ . +.++|+|||+++.
T Consensus 481 ~~~~~~~df~~iA~a~G~~~~~v~--~~~el~~al~~a~~-~-~~~~p~liev~i~ 532 (575)
T TIGR02720 481 GVDFNDADFAKIAEGVGAVGFRVN--KIEQLPAVFEQAKA-I-KQGKPVLIDAKIT 532 (575)
T ss_pred cccCCCCCHHHHHHHCCCEEEEeC--CHHHHHHHHHHHHh-h-CCCCcEEEEEEeC
Confidence 01234689999999999999997 68899999999875 2 3579999999985
No 86
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=99.56 E-value=1.5e-14 Score=153.38 Aligned_cols=116 Identities=21% Similarity=0.292 Sum_probs=94.1
Q ss_pred cCCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCC-cccccccc-----c-
Q 017890 235 ISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNG-WAISTNIS-----E- 307 (364)
Q Consensus 235 ~sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg-~ais~~~~-----~- 307 (364)
..|+||+++|.|+|+++|. +++.||+++|||++++. ..| |.+|.++++|+++||.||+ |++..... .
T Consensus 432 ~~g~mG~glpaAiGA~lA~----p~r~Vv~i~GDG~f~m~-~~e-L~Ta~r~~lpvi~vV~NN~~~g~i~~~q~~~~~~~ 505 (616)
T PRK07418 432 GLGTMGFGMPAAMGVKVAL----PDEEVICIAGDASFLMN-IQE-LGTLAQYGINVKTVIINNGWQGMVRQWQESFYGER 505 (616)
T ss_pred CccccccHHHHHHHHHHhC----CCCcEEEEEcchHhhhh-HHH-HHHHHHhCCCeEEEEEECCcchHHHHHHHHhcCCC
Confidence 3589999999999998884 68899999999999974 555 9999999999988888776 55432110 0
Q ss_pred ----cc--CCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q 017890 308 ----QF--RSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNF 362 (364)
Q Consensus 308 ----~~--~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R 362 (364)
.. ...|+++.|++||+++++|+ +++++.+++++|++ .++|+|||+++.+
T Consensus 506 ~~~~~~~~~~~d~~~~A~a~G~~g~~V~--~~~el~~al~~a~~----~~~p~lIeV~i~~ 560 (616)
T PRK07418 506 YSASNMEPGMPDFVKLAEAFGVKGMVIS--ERDQLKDAIAEALA----HDGPVLIDVHVRR 560 (616)
T ss_pred ceeecCCCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEecC
Confidence 01 23689999999999999997 79999999988876 5789999999853
No 87
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.55 E-value=1.9e-14 Score=151.89 Aligned_cols=116 Identities=22% Similarity=0.343 Sum_probs=93.3
Q ss_pred CCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCC-cccccc---------c
Q 017890 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNG-WAISTN---------I 305 (364)
Q Consensus 236 sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg-~ais~~---------~ 305 (364)
.|+||+++|.|+|+++|. ++++||+++|||++++. ..| |.+|.++++|+++||.||+ |++... .
T Consensus 436 ~gsmG~glpaaiGa~lA~----p~r~Vv~i~GDGsf~m~-~~e-L~Ta~r~~lpviivV~NN~~~~~i~~~q~~~~~~~~ 509 (587)
T PRK06965 436 LGTMGVGLPYAMGIKMAH----PDDDVVCITGEGSIQMC-IQE-LSTCLQYDTPVKIISLNNRYLGMVRQWQEIEYSKRY 509 (587)
T ss_pred cccccchHHHHHHHHHhC----CCCcEEEEEcchhhhcC-HHH-HHHHHHcCCCeEEEEEECCcchHHHHHHHHhcCCCc
Confidence 479999999999999884 67899999999999985 445 9999999999988887776 554221 1
Q ss_pred ccc-c-CCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q 017890 306 SEQ-F-RSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNF 362 (364)
Q Consensus 306 ~~~-~-~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R 362 (364)
... . ...|+++.|++||+++.+|+ +.+++.+++++|++. .++|+|||+.+.+
T Consensus 510 ~~~~~~~~~d~~~iA~a~G~~~~~v~--~~~eL~~al~~a~~~---~~~p~lieV~i~~ 563 (587)
T PRK06965 510 SHSYMDALPDFVKLAEAYGHVGMRIE--KTSDVEPALREALRL---KDRTVFLDFQTDP 563 (587)
T ss_pred cccCCCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHhc---CCCcEEEEEEecc
Confidence 011 1 23589999999999999997 789999999998862 3689999999853
No 88
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=99.55 E-value=3.1e-14 Score=148.91 Aligned_cols=116 Identities=16% Similarity=0.293 Sum_probs=93.0
Q ss_pred cCCCcccchhHHHHHHHHhhhccC-CCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcC-Cccccccc-------
Q 017890 235 ISSPIATQLPQAVGVAYSLKMEKK-DACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNN-GWAISTNI------- 305 (364)
Q Consensus 235 ~sg~LG~~lp~AvG~A~A~k~~~~-~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NN-g~ais~~~------- 305 (364)
..|+||+++|.|+|+++|. + +++|||++|||++++. ..| |.+|.++++|+++||.|| +|++....
T Consensus 394 ~~g~mG~glpaaiGa~la~----p~~~~Vv~i~GDGsf~~~-~~e-L~Ta~~~~lpi~ivV~NN~~~g~i~~~q~~~~~~ 467 (549)
T PRK06457 394 WLGSMGIGVPGSVGASFAV----ENKRQVISFVGDGGFTMT-MME-LITAKKYDLPVKIIIYNNSKLGMIKFEQEVMGYP 467 (549)
T ss_pred CcchhhhhHHHHHHHHhcC----CCCCeEEEEEcccHHhhh-HHH-HHHHHHHCCCeEEEEEECCccchHHHHHHHhcCC
Confidence 3589999999999998874 4 7899999999999974 444 999999999987666665 57653210
Q ss_pred --ccccCCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q 017890 306 --SEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNF 362 (364)
Q Consensus 306 --~~~~~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R 362 (364)
.......|+.+.|++||+++.+|+ +++++..++++|++ .++|+|||+++.+
T Consensus 468 ~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~lIeV~i~~ 520 (549)
T PRK06457 468 EWGVDLYNPDFTKIAESIGFKGFRLE--EPKEAEEIIEEFLN----TKGPAVLDAIVDP 520 (549)
T ss_pred cccccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEeCc
Confidence 011224589999999999999998 79999999998875 5789999999853
No 89
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=99.55 E-value=3.8e-14 Score=148.46 Aligned_cols=116 Identities=23% Similarity=0.334 Sum_probs=93.2
Q ss_pred cCCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCC-ccccc-cccc-----
Q 017890 235 ISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNG-WAIST-NISE----- 307 (364)
Q Consensus 235 ~sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg-~ais~-~~~~----- 307 (364)
..|+||+++|.|+|++++ .++++|||++|||++++. . .+|.+|+++++|+++||.||+ |++.. ....
T Consensus 413 ~~g~mG~glpaaiGa~la----~p~~~vv~i~GDGsf~~~-~-~el~ta~~~~l~i~~vv~nN~~~~~~~~~~~~~~~~~ 486 (557)
T PRK08199 413 TSGSMGYGLPAAIAAKLL----FPERTVVAFAGDGCFLMN-G-QELATAVQYGLPIIVIVVNNGMYGTIRMHQEREYPGR 486 (557)
T ss_pred CCccccchHHHHHHHHHh----CCCCcEEEEEcchHhhcc-H-HHHHHHHHhCCCeEEEEEeCCcchHHHHHHHHhcCCc
Confidence 358999999999998877 468899999999999873 3 559999999999998888887 76432 1110
Q ss_pred ----ccCCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q 017890 308 ----QFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNF 362 (364)
Q Consensus 308 ----~~~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R 362 (364)
.....++++.+++||+++.+|+ +++++.++++++++ .++|+|||+++-+
T Consensus 487 ~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~----~~gp~li~v~~~~ 539 (557)
T PRK08199 487 VSGTDLTNPDFAALARAYGGHGETVE--RTEDFAPAFERALA----SGKPALIEIRIDP 539 (557)
T ss_pred cccccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEeCH
Confidence 1123589999999999999998 68888888888775 5789999999853
No 90
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=99.55 E-value=2.5e-14 Score=150.85 Aligned_cols=115 Identities=19% Similarity=0.313 Sum_probs=92.9
Q ss_pred cCCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCC-ccccccc------cc
Q 017890 235 ISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNG-WAISTNI------SE 307 (364)
Q Consensus 235 ~sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg-~ais~~~------~~ 307 (364)
..|+||+++|.|+|+++|. ++++||+++|||++++. ..| |.+|.++++|+++||.||+ |++.... ..
T Consensus 428 ~~g~mG~glpaaiGaala~----p~~~vv~i~GDG~f~m~-~~e-L~Ta~~~~l~~~~vV~NN~~y~~i~~~q~~~~~~~ 501 (585)
T CHL00099 428 GLGTMGYGLPAAIGAQIAH----PNELVICISGDASFQMN-LQE-LGTIAQYNLPIKIIIINNKWQGMVRQWQQAFYGER 501 (585)
T ss_pred cccchhhhHHHHHHHHHhC----CCCeEEEEEcchhhhhh-HHH-HHHHHHhCCCeEEEEEECCcchHHHHHHHHhcCCC
Confidence 3589999999999999885 57899999999999974 455 9999999999988888886 5542110 00
Q ss_pred ------ccCCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEee
Q 017890 308 ------QFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLN 361 (364)
Q Consensus 308 ------~~~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~ 361 (364)
.....++.+.+++||+++++|+ +.+++.+++++|++ .++|.|||+++-
T Consensus 502 ~~~~~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~liev~v~ 555 (585)
T CHL00099 502 YSHSNMEEGAPDFVKLAEAYGIKGLRIK--SRKDLKSSLKEALD----YDGPVLIDCQVI 555 (585)
T ss_pred cccccCCCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEEC
Confidence 1113589999999999999997 68899999988876 578999999985
No 91
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=99.54 E-value=4.2e-14 Score=148.60 Aligned_cols=115 Identities=27% Similarity=0.399 Sum_probs=92.7
Q ss_pred CCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCC-ccccccc-----c---
Q 017890 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNG-WAISTNI-----S--- 306 (364)
Q Consensus 236 sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg-~ais~~~-----~--- 306 (364)
.|+||+++|.|+|+++|. ++++||+++|||++++ .++| |.+|.++++|+++||.||+ |++.... .
T Consensus 423 ~g~mG~glpaAiGaala~----p~~~vv~i~GDGsf~m-~~~e-L~ta~r~~lpi~ivV~NN~~~~~i~~~~~~~~~~~~ 496 (571)
T PRK07710 423 LGTMGFGLPAAIGAQLAK----PDETVVAIVGDGGFQM-TLQE-LSVIKELSLPVKVVILNNEALGMVRQWQEEFYNQRY 496 (571)
T ss_pred cccccchHHHHHHHHHhC----CCCcEEEEEcchHHhh-hHHH-HHHHHHhCCCeEEEEEECchHHHHHHHHHHHhCCcc
Confidence 489999999999999884 6789999999999998 4666 9999999999877776664 7653211 0
Q ss_pred ---cccCCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q 017890 307 ---EQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNF 362 (364)
Q Consensus 307 ---~~~~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R 362 (364)
......++++.|++||+++.+|+ +.+++.+++++|++ .++|+|||+.+.+
T Consensus 497 ~~~~~~~~~d~~~~A~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~lieV~vd~ 549 (571)
T PRK07710 497 SHSLLSCQPDFVKLAEAYGIKGVRID--DELEAKEQLQHAIE----LQEPVVIDCRVLQ 549 (571)
T ss_pred eeccCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh----CCCCEEEEEEecC
Confidence 11134689999999999999997 57888888888775 5799999999863
No 92
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.54 E-value=4.4e-14 Score=148.51 Aligned_cols=118 Identities=25% Similarity=0.341 Sum_probs=94.7
Q ss_pred CCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCC-ccccccc---------
Q 017890 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNG-WAISTNI--------- 305 (364)
Q Consensus 236 sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg-~ais~~~--------- 305 (364)
.|+||+++|.|+|+++|. +++.||+++|||+|++. ..| |.+|.+++||+++||.||+ |++....
T Consensus 420 ~g~mG~glpaaiGa~la~----p~~~vv~i~GDG~f~m~-~~e-L~Ta~r~~l~v~ivV~NN~~yg~i~~~q~~~~~~~~ 493 (574)
T PRK07979 420 LGTMGFGLPAALGVKMAL----PEETVVCVTGDGSIQMN-IQE-LSTALQYELPVLVLNLNNRYLGMVKQWQDMIYSGRH 493 (574)
T ss_pred ccchhhHHHHHHHHHHhC----CCCeEEEEEcchhhhcc-HHH-HHHHHHhCCCeEEEEEeCchhhHHHHHHHHhcCCcc
Confidence 489999999999999884 67899999999999984 444 9999999999988877775 6653211
Q ss_pred ccc-c-CCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q 017890 306 SEQ-F-RSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNF 362 (364)
Q Consensus 306 ~~~-~-~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R 362 (364)
... . ...|+++.|++||+++++|+ +++++.+++++|.+.++ .++|+|||+++.+
T Consensus 494 ~~~~~~~~~d~~~iA~a~G~~g~~v~--~~~eL~~al~~a~~~~~-~~~p~lIeV~i~~ 549 (574)
T PRK07979 494 SQSYMQSLPDFVRLAEAYGHVGIQIS--HPDELESKLSEALEQVR-NNRLVFVDVTVDG 549 (574)
T ss_pred ccccCCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHhccC-CCCcEEEEEEECC
Confidence 011 1 23689999999999999997 79999999999987433 3789999999854
No 93
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=99.54 E-value=3.5e-14 Score=149.41 Aligned_cols=118 Identities=20% Similarity=0.282 Sum_probs=94.2
Q ss_pred CCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcC-Ccccccccc-----c--
Q 017890 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNN-GWAISTNIS-----E-- 307 (364)
Q Consensus 236 sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NN-g~ais~~~~-----~-- 307 (364)
.|+||+++|.|+|+++|. ++++|||++|||+|++. ..| |.+|.++++|+++||.|| +|++..... .
T Consensus 429 ~g~mG~~lpaaiGa~la~----p~~~Vv~i~GDG~f~m~-~~e-L~Tavr~~lpvi~vV~NN~~yg~i~~~~~~~~~~~~ 502 (579)
T TIGR03457 429 FGNCGYAFPTIIGAKIAA----PDRPVVAYAGDGAWGMS-MNE-IMTAVRHDIPVTAVVFRNRQWGAEKKNQVDFYNNRF 502 (579)
T ss_pred cccccchHHHHHhhhhhC----CCCcEEEEEcchHHhcc-HHH-HHHHHHhCCCeEEEEEECcchHHHHHHHHHhhCCcc
Confidence 489999999999998884 67899999999999985 555 999999999997777666 476532110 0
Q ss_pred ---ccCC-ccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q 017890 308 ---QFRS-DGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNF 362 (364)
Q Consensus 308 ---~~~~-~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R 362 (364)
.... .|+++.|++||+++.+|+ +++++.+++++|++.. +.++|+|||+++-+
T Consensus 503 ~~~~~~~~~d~~~lA~a~G~~g~~v~--~~~el~~al~~a~~~~-~~~~p~lieV~v~~ 558 (579)
T TIGR03457 503 VGTELESELSFAGIADAMGAKGVVVD--KPEDVGPALKKAIAAQ-AEGKTTVIEIVCTR 558 (579)
T ss_pred eeccCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhhC-CCCCcEEEEEEeCC
Confidence 1122 489999999999999997 7999999999998643 24689999999854
No 94
>PRK08322 acetolactate synthase; Reviewed
Probab=99.54 E-value=4.5e-14 Score=147.29 Aligned_cols=115 Identities=19% Similarity=0.313 Sum_probs=92.9
Q ss_pred CCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcC-Cccccccc-----c---
Q 017890 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNN-GWAISTNI-----S--- 306 (364)
Q Consensus 236 sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NN-g~ais~~~-----~--- 306 (364)
.|+||+++|.|+|+++|. ++++||+++|||++++. ..| |.+|.++++|+++||.|| +|++.... .
T Consensus 405 ~g~mG~~lpaaiGa~la~----p~~~vv~i~GDGsf~m~-~~e-L~Ta~~~~lpv~iiV~NN~~~g~~~~~~~~~~~~~~ 478 (547)
T PRK08322 405 LATMGAGLPSAIAAKLVH----PDRKVLAVCGDGGFMMN-SQE-LETAVRLGLPLVVLILNDNAYGMIRWKQENMGFEDF 478 (547)
T ss_pred cccccchhHHHHHHHHhC----CCCcEEEEEcchhHhcc-HHH-HHHHHHhCCCeEEEEEeCCCcchHHHHHHhhcCCcc
Confidence 479999999999998884 67899999999999975 455 999999999987666655 57753210 0
Q ss_pred -cccCCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q 017890 307 -EQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNF 362 (364)
Q Consensus 307 -~~~~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R 362 (364)
......|+++.|++||+++.+|+ +.+++.++++++.+ .++|+|||+.+.+
T Consensus 479 ~~~~~~~df~~lA~a~G~~~~~v~--~~~eL~~al~~a~~----~~~p~lIev~v~~ 529 (547)
T PRK08322 479 GLDFGNPDFVKYAESYGAKGYRVE--SADDLLPTLEEALA----QPGVHVIDCPVDY 529 (547)
T ss_pred cccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEecC
Confidence 11124689999999999999997 79999999998875 5799999999864
No 95
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=99.54 E-value=4e-14 Score=148.64 Aligned_cols=115 Identities=20% Similarity=0.280 Sum_probs=93.8
Q ss_pred CCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCC-cccccccc-----c--
Q 017890 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNG-WAISTNIS-----E-- 307 (364)
Q Consensus 236 sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg-~ais~~~~-----~-- 307 (364)
.|+||+++|.|+|+++|. ++++||+++|||+|++. ..| |.+|.++++|+++||.||+ |++....+ .
T Consensus 420 ~g~mG~glpaAiGa~la~----p~~~vv~i~GDG~f~m~-~~e-L~Ta~~~~l~i~ivV~NN~~yg~i~~~q~~~~~~~~ 493 (572)
T PRK06456 420 MGTMGFGLPAAMGAKLAR----PDKVVVDLDGDGSFLMT-GTN-LATAVDEHIPVISVIFDNRTLGLVRQVQDLFFGKRI 493 (572)
T ss_pred cccccchhHHHHHHHHhC----CCCeEEEEEccchHhcc-hHH-HHHHHHhCCCeEEEEEECCchHHHHHHHHHhhCCCc
Confidence 489999999999999884 67899999999999985 455 9999999999987777775 77543111 0
Q ss_pred ---cc-CCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q 017890 308 ---QF-RSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNF 362 (364)
Q Consensus 308 ---~~-~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R 362 (364)
.. ...|+++.|++||+++.+|+ +++++.+++++|.+ .++|+|||+.+.+
T Consensus 494 ~~~~~~~~~d~~~~A~a~G~~~~~v~--~~~eL~~al~~a~~----~~~p~lIev~v~~ 546 (572)
T PRK06456 494 VGVDYGPSPDFVKLAEAFGALGFNVT--TYEDIEKSLKSAIK----EDIPAVIRVPVDK 546 (572)
T ss_pred ccccCCCCCCHHHHHHHCCCeeEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEeCc
Confidence 11 23689999999999999997 79999999988875 5789999999864
No 96
>PLN02573 pyruvate decarboxylase
Probab=99.54 E-value=2.7e-14 Score=150.50 Aligned_cols=116 Identities=16% Similarity=0.163 Sum_probs=93.1
Q ss_pred CCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCC-cccccccc----cccC
Q 017890 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNG-WAISTNIS----EQFR 310 (364)
Q Consensus 236 sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg-~ais~~~~----~~~~ 310 (364)
.|+||+++|.|+|+++|. ++++|||++|||+|++. .+| |.+|.++++|+++||.||+ |++..... ....
T Consensus 427 ~gsmG~glpaaiGa~lA~----p~r~vv~i~GDG~f~m~-~~E-L~Ta~r~~lpvv~vV~NN~~yg~~~~~~~~~~~~~~ 500 (578)
T PLN02573 427 YGSIGWSVGATLGYAQAA----PDKRVIACIGDGSFQVT-AQD-VSTMIRCGQKSIIFLINNGGYTIEVEIHDGPYNVIK 500 (578)
T ss_pred hhhhhhhhhHHHHHHHhC----CCCceEEEEeccHHHhH-HHH-HHHHHHcCCCCEEEEEeCCceeEEEeecccCccccC
Confidence 589999999999999885 67899999999999984 455 9999999999877777665 77543211 1123
Q ss_pred CccHHHHHhhcC-----eEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEee
Q 017890 311 SDGIVVKGRAYG-----IRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLN 361 (364)
Q Consensus 311 ~~~ia~~a~a~G-----~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~ 361 (364)
..++++.|++|| +++.+|+ +.+++.+++++|++. +.++|+|||+++-
T Consensus 501 ~~d~~~lA~a~G~~~g~~~~~~V~--~~~eL~~al~~a~~~--~~~~p~lieV~v~ 552 (578)
T PLN02573 501 NWNYTGLVDAIHNGEGKCWTAKVR--TEEELIEAIATATGE--KKDCLCFIEVIVH 552 (578)
T ss_pred CCCHHHHHHHhcCcCCceeEEEec--CHHHHHHHHHHHHhh--CCCCcEEEEEEcC
Confidence 468999999985 8999998 689999999998742 2478999999874
No 97
>PRK06112 acetolactate synthase catalytic subunit; Validated
Probab=99.54 E-value=5.1e-14 Score=148.09 Aligned_cols=115 Identities=27% Similarity=0.394 Sum_probs=92.1
Q ss_pred CCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCC-ccccccccc-------
Q 017890 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNG-WAISTNISE------- 307 (364)
Q Consensus 236 sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg-~ais~~~~~------- 307 (364)
.++||+++|.|+|+++| +++++|||++|||++++ ..++|++|.++++|+++||.||+ |++....+.
T Consensus 436 ~gsmG~~l~~aiGa~la----~~~~~vv~i~GDGsf~~--~~~el~ta~~~~l~~~~vv~NN~~~g~~~~~~~~~~~~~~ 509 (578)
T PRK06112 436 LAGLGWGVPMAIGAKVA----RPGAPVICLVGDGGFAH--VWAELETARRMGVPVTIVVLNNGILGFQKHAETVKFGTHT 509 (578)
T ss_pred ccccccHHHHHHHHHhh----CCCCcEEEEEcchHHHh--HHHHHHHHHHhCCCeEEEEEeCCccCCEEeccccccCCcc
Confidence 47899999999999877 46789999999999986 35669999999999988888886 443211100
Q ss_pred ---ccCCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q 017890 308 ---QFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNF 362 (364)
Q Consensus 308 ---~~~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R 362 (364)
.....++++.|++||+++++|+ +++++.+++++|++ .++|+|||+++-+
T Consensus 510 ~~~~~~~~d~~~~A~a~G~~~~~v~--~~~el~~al~~a~~----~~gp~lIev~~~~ 561 (578)
T PRK06112 510 DACHFAAVDHAAIARACGCDGVRVE--DPAELAQALAAAMA----APGPTLIEVITDP 561 (578)
T ss_pred ccCcCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEcCc
Confidence 1124579999999999999998 68899888888875 5799999999854
No 98
>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria.
Probab=99.54 E-value=2.3e-14 Score=149.54 Aligned_cols=114 Identities=19% Similarity=0.244 Sum_probs=91.3
Q ss_pred CCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcC-Ccccccccc------cc
Q 017890 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNN-GWAISTNIS------EQ 308 (364)
Q Consensus 236 sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NN-g~ais~~~~------~~ 308 (364)
.|+||+++|.|+|+++|. ++++|||++|||++++. ..| |.+|.++++|+++||.|| +|++..... ..
T Consensus 403 ~g~mG~glpaaiGa~la~----p~~~vv~i~GDG~f~m~-~~E-L~Ta~~~~lpi~~vV~NN~~y~~i~~~~~~~~~~~~ 476 (539)
T TIGR03393 403 WGSIGYTLPAAFGAQTAC----PNRRVILLIGDGSAQLT-IQE-LGSMLRDKQHPIILVLNNEGYTVERAIHGAEQRYND 476 (539)
T ss_pred hhhhhhHHHHHHHHHhcC----CCCCeEEEEcCcHHHhH-HHH-HHHHHHcCCCCEEEEEeCCceEEEEeecCCCCCcCc
Confidence 489999999999998874 78899999999999984 444 999999999987666666 576532111 11
Q ss_pred cCCccHHHHHhhcCeE----EEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEee
Q 017890 309 FRSDGIVVKGRAYGIR----SIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLN 361 (364)
Q Consensus 309 ~~~~~ia~~a~a~G~~----~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~ 361 (364)
....++++.+++||++ +.+|+ +.+++.+++++|++ .++|+|||+++-
T Consensus 477 ~~~~df~~la~a~G~~~~~~~~~v~--~~~el~~al~~a~~----~~~p~liev~i~ 527 (539)
T TIGR03393 477 IALWNWTHLPQALSLDPQSECWRVS--EAEQLADVLEKVAA----HERLSLIEVVLP 527 (539)
T ss_pred CCCCCHHHHHHHcCCCCccceEEec--cHHHHHHHHHHHhc----cCCeEEEEEEcC
Confidence 2346899999999985 88997 78899999988875 578999999874
No 99
>PRK08611 pyruvate oxidase; Provisional
Probab=99.53 E-value=4.3e-14 Score=148.79 Aligned_cols=115 Identities=23% Similarity=0.309 Sum_probs=92.8
Q ss_pred CCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcC-Cccccccc---------
Q 017890 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNN-GWAISTNI--------- 305 (364)
Q Consensus 236 sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NN-g~ais~~~--------- 305 (364)
.|+||+++|.|+|+++|. +++.||+++|||++++. ..| |.+|.++++|+++||.|| +|++....
T Consensus 407 ~g~mG~glpaaiGa~la~----p~~~Vv~i~GDGsf~m~-~~e-L~Ta~r~~l~~iivV~NN~~~g~i~~~q~~~~~~~~ 480 (576)
T PRK08611 407 LGTMGCGLPGAIAAKIAF----PDRQAIAICGDGGFSMV-MQD-FVTAVKYKLPIVVVVLNNQQLAFIKYEQQAAGELEY 480 (576)
T ss_pred chhhhhhHHHHHHHHHhC----CCCcEEEEEcccHHhhh-HHH-HHHHHHhCCCeEEEEEeCCcchHHHHHHHHhcCCcc
Confidence 489999999999998874 67899999999999985 555 999999999987666666 57653210
Q ss_pred ccccCCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q 017890 306 SEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNF 362 (364)
Q Consensus 306 ~~~~~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R 362 (364)
.......|+++.|++||+++++|+ +++++.++++++++ .++|+|||+.+.+
T Consensus 481 ~~~~~~~d~~~lA~a~G~~~~~v~--~~~eL~~al~~a~~----~~~p~lIeV~vd~ 531 (576)
T PRK08611 481 AIDLSDMDYAKFAEACGGKGYRVE--KAEELDPAFEEALA----QDKPVIIDVYVDP 531 (576)
T ss_pred cccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEeCC
Confidence 011234689999999999999997 78999999988875 5899999999864
No 100
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.53 E-value=6.1e-14 Score=147.30 Aligned_cols=117 Identities=23% Similarity=0.324 Sum_probs=93.4
Q ss_pred cCCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCC-cccccc---------
Q 017890 235 ISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNG-WAISTN--------- 304 (364)
Q Consensus 235 ~sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg-~ais~~--------- 304 (364)
..|+||+++|.|+|+++|. ++++|||++|||++++. . ++|.+|.++++|+++||.||+ |++...
T Consensus 419 ~~g~mG~~lp~aiGa~la~----p~~~vv~i~GDG~f~~~-~-~eL~ta~~~~lpv~~vV~NN~~~~~i~~~q~~~~~~~ 492 (574)
T PRK06882 419 GAGTMGFGLPAAIGVKFAH----PEATVVCVTGDGSIQMN-I-QELSTAKQYDIPVVIVSLNNRFLGMVKQWQDLIYSGR 492 (574)
T ss_pred CcccccchhHHHHHHHhhc----CCCcEEEEEcchhhhcc-H-HHHHHHHHhCCCeEEEEEECchhHHHHHHHHHhcCCc
Confidence 3588999999999999884 57899999999999985 4 559999999999988888886 543211
Q ss_pred -cccc-cCCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q 017890 305 -ISEQ-FRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNF 362 (364)
Q Consensus 305 -~~~~-~~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R 362 (364)
.... ....++++.|++||+++++|+ +.+++..++++|++. .++|+|||+++-+
T Consensus 493 ~~~~~~~~~~d~~~la~a~G~~~~~v~--~~~eL~~al~~a~~~---~~~p~liev~i~~ 547 (574)
T PRK06882 493 HSQVYMNSLPDFAKLAEAYGHVGIQID--TPDELEEKLTQAFSI---KDKLVFVDVNVDE 547 (574)
T ss_pred ccccCCCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHhc---CCCcEEEEEEecC
Confidence 0011 123589999999999999997 688999999888762 3689999999864
No 101
>PRK08617 acetolactate synthase; Reviewed
Probab=99.53 E-value=3.3e-14 Score=148.63 Aligned_cols=115 Identities=19% Similarity=0.319 Sum_probs=92.5
Q ss_pred CCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcC-Ccccccccc-----c--
Q 017890 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNN-GWAISTNIS-----E-- 307 (364)
Q Consensus 236 sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NN-g~ais~~~~-----~-- 307 (364)
.++||+++|.|+|+++|. +++.|||++|||++++. ..| |.+|.++++|+++||.|| +|++..... .
T Consensus 413 ~g~mG~~lpaaiGa~la~----p~~~vv~i~GDGsf~m~-~~e-L~Ta~~~~lpv~~vV~NN~~~~~~~~~~~~~~~~~~ 486 (552)
T PRK08617 413 MQTLGVALPWAIAAALVR----PGKKVVSVSGDGGFLFS-AME-LETAVRLKLNIVHIIWNDGHYNMVEFQEEMKYGRSS 486 (552)
T ss_pred cccccccccHHHhhHhhc----CCCcEEEEEechHHhhh-HHH-HHHHHHhCCCeEEEEEECCccchHHHHHHhhcCCcc
Confidence 479999999999998874 67899999999999984 555 999999999997766666 476532110 0
Q ss_pred --ccCCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q 017890 308 --QFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNF 362 (364)
Q Consensus 308 --~~~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R 362 (364)
.....++++.|++||+++.+|. +++++.+++++|++ .++|+|||+++.+
T Consensus 487 ~~~~~~~d~~~lA~a~G~~~~~v~--~~~eL~~al~~a~~----~~~p~liev~~~~ 537 (552)
T PRK08617 487 GVDFGPVDFVKYAESFGAKGLRVT--SPDELEPVLREALA----TDGPVVIDIPVDY 537 (552)
T ss_pred cCCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh----CCCcEEEEEEecc
Confidence 1124689999999999999997 78999999988875 5789999999864
No 102
>PLN02470 acetolactate synthase
Probab=99.53 E-value=5.4e-14 Score=148.27 Aligned_cols=115 Identities=22% Similarity=0.258 Sum_probs=92.4
Q ss_pred CCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCC-cccccc---------c
Q 017890 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNG-WAISTN---------I 305 (364)
Q Consensus 236 sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg-~ais~~---------~ 305 (364)
.|+||+++|.|+|+++|. +++.|||++|||++++. ..| |.+|.++++|+++||.||+ |++... .
T Consensus 425 ~g~mG~glpaaiGa~la~----p~~~Vv~i~GDG~f~m~-~~e-L~Ta~~~~l~v~ivV~NN~~yg~i~~~~~~~~~~~~ 498 (585)
T PLN02470 425 LGAMGFGLPAAIGAAAAN----PDAIVVDIDGDGSFIMN-IQE-LATIHVENLPVKIMVLNNQHLGMVVQWEDRFYKANR 498 (585)
T ss_pred cccccchHHHHHHHHHhC----CCCcEEEEEccchhhcc-HHH-HHHHHHhCCCeEEEEEeCCcchHHHHHHHHHhCCce
Confidence 489999999999999884 67899999999999985 455 9999999999977777664 654311 0
Q ss_pred ccc-cC--------CccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q 017890 306 SEQ-FR--------SDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNF 362 (364)
Q Consensus 306 ~~~-~~--------~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R 362 (364)
... .. ..++++.|++||+++.+|+ +.+++.+++++|++ .++|+|||+++-+
T Consensus 499 ~~~~~~~~~~~~~~~~d~~~iA~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~lieV~i~~ 558 (585)
T PLN02470 499 AHTYLGDPDAEAEIFPDFLKFAEGCKIPAARVT--RKSDLREAIQKMLD----TPGPYLLDVIVPH 558 (585)
T ss_pred eeeecCccccccCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh----CCCCEEEEEEeCC
Confidence 000 00 1589999999999999997 78999999999876 4789999999853
No 103
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=99.53 E-value=6.6e-14 Score=146.85 Aligned_cols=115 Identities=24% Similarity=0.356 Sum_probs=92.9
Q ss_pred CCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCC-cccccc---------c
Q 017890 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNG-WAISTN---------I 305 (364)
Q Consensus 236 sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg-~ais~~---------~ 305 (364)
.|+||+++|.|+|+++|. ++++|||++|||++++. ..| |.+|.++++|+++||.||+ |++... .
T Consensus 413 ~g~mG~glpaaiGa~la~----p~~~Vv~i~GDG~f~m~-~~e-L~Ta~~~~l~i~~vV~NN~~y~~i~~~~~~~~~~~~ 486 (561)
T PRK06048 413 LGTMGYGFPAAIGAKVGK----PDKTVIDIAGDGSFQMN-SQE-LATAVQNDIPVIVAILNNGYLGMVRQWQELFYDKRY 486 (561)
T ss_pred ccccccHHHHHHHHHHhC----CCCcEEEEEeCchhhcc-HHH-HHHHHHcCCCeEEEEEECCccHHHHHHHHHHcCCcc
Confidence 379999999999999884 67899999999999985 555 9999999999977777665 664321 0
Q ss_pred ccc--cCCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q 017890 306 SEQ--FRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNF 362 (364)
Q Consensus 306 ~~~--~~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R 362 (364)
... ....|+++.|++||+++++|+ +++++.+++++|++ .++|+|||+++-+
T Consensus 487 ~~~~~~~~~d~~~lA~a~G~~~~~v~--t~~el~~al~~a~~----~~~p~liev~~~~ 539 (561)
T PRK06048 487 SHTCIKGSVDFVKLAEAYGALGLRVE--KPSEVRPAIEEAVA----SDRPVVIDFIVEC 539 (561)
T ss_pred cccCCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh----CCCCEEEEEEecC
Confidence 001 134689999999999999998 68899999998875 5799999999853
No 104
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.53 E-value=7.1e-14 Score=147.01 Aligned_cols=116 Identities=25% Similarity=0.379 Sum_probs=93.1
Q ss_pred CCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCC-ccccccc---------
Q 017890 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNG-WAISTNI--------- 305 (364)
Q Consensus 236 sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg-~ais~~~--------- 305 (364)
.|+||+++|.|+|+++|. +++.|||++|||++++. ..| |.+|.++++|+++||.||+ |++....
T Consensus 420 ~g~mG~glpaaiGa~la~----p~~~vv~i~GDG~f~m~-~~E-L~Ta~r~~lpv~~vV~NN~~y~~i~~~q~~~~~~~~ 493 (572)
T PRK08979 420 LGTMGFGLPAAMGVKFAM----PDETVVCVTGDGSIQMN-IQE-LSTALQYDIPVKIINLNNRFLGMVKQWQDMIYQGRH 493 (572)
T ss_pred cccccchhhHHHhhhhhC----CCCeEEEEEcchHhhcc-HHH-HHHHHHcCCCeEEEEEeCCccHHHHHHHHHHhCCcc
Confidence 479999999999998884 67899999999999985 455 9999999999987777775 6643211
Q ss_pred -cccc-CCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q 017890 306 -SEQF-RSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNF 362 (364)
Q Consensus 306 -~~~~-~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R 362 (364)
.... ...|+++.|++||+++.+|+ ++.++..++++|.+. .++|+|||+++-+
T Consensus 494 ~~~~~~~~~d~~~~A~a~G~~~~~v~--~~~eL~~al~~a~~~---~~~p~lIev~i~~ 547 (572)
T PRK08979 494 SHSYMDSVPDFAKIAEAYGHVGIRIS--DPDELESGLEKALAM---KDRLVFVDINVDE 547 (572)
T ss_pred cccCCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhc---CCCcEEEEEEeCC
Confidence 0111 23689999999999999998 789999999988752 3789999999853
No 105
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=99.53 E-value=7.8e-14 Score=146.28 Aligned_cols=115 Identities=19% Similarity=0.312 Sum_probs=94.6
Q ss_pred CCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCC-cccccccc--------
Q 017890 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNG-WAISTNIS-------- 306 (364)
Q Consensus 236 sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg-~ais~~~~-------- 306 (364)
.|+||+++|.|+|+++|. ++++||+++|||++++. .+| |.+|.++++|+++||.||+ |++....+
T Consensus 418 ~g~mG~~lpaaiGa~la~----~~~~vv~i~GDGsf~~~-~~e-L~ta~~~~lpvi~vV~NN~~~g~~~~~q~~~~~~~~ 491 (564)
T PRK08155 418 LGTMGFGLPAAIGAALAN----PERKVLCFSGDGSLMMN-IQE-MATAAENQLDVKIILMNNEALGLVHQQQSLFYGQRV 491 (564)
T ss_pred cccccchhHHHHHHHHhC----CCCcEEEEEccchhhcc-HHH-HHHHHHhCCCeEEEEEeCCcccccHHHHHHhcCCCe
Confidence 479999999999999885 67899999999999984 677 9999999999988888776 77643211
Q ss_pred --ccc-CCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q 017890 307 --EQF-RSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNF 362 (364)
Q Consensus 307 --~~~-~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R 362 (364)
..+ ...++++.|++||+++++|+ +.+++.+++++|++ .++|+|||+.+-+
T Consensus 492 ~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~lIeV~~~~ 544 (564)
T PRK08155 492 FAATYPGKINFMQIAAGFGLETCDLN--NEADPQAALQEAIN----RPGPALIHVRIDA 544 (564)
T ss_pred eeccCCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEeCC
Confidence 111 23689999999999999998 68899998888875 5789999999853
No 106
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.53 E-value=9e-14 Score=145.89 Aligned_cols=115 Identities=22% Similarity=0.338 Sum_probs=93.2
Q ss_pred CCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCC-cccccccc--------
Q 017890 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNG-WAISTNIS-------- 306 (364)
Q Consensus 236 sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg-~ais~~~~-------- 306 (364)
.|+||+++|.|+|+++|. ++++|||++|||++++. ..| |.+|.++++|+|+||.||+ |++.....
T Consensus 413 ~g~mG~~l~~aiGa~la~----p~~~vv~i~GDG~f~m~-~~e-L~Ta~~~~lpvi~vV~NN~~~~~i~~~~~~~~~~~~ 486 (563)
T PRK08527 413 LGTMGYGLPAALGAKLAV----PDKVVINFTGDGSILMN-IQE-LMTAVEYKIPVINIILNNNFLGMVRQWQTFFYEERY 486 (563)
T ss_pred cccccchHHHHHHHHHhC----CCCcEEEEecCchhccc-HHH-HHHHHHhCCCeEEEEEECCcchhHHHHHHhhcCCce
Confidence 489999999999999884 57889999999999984 666 9999999999987777775 65432110
Q ss_pred --ccc-CCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q 017890 307 --EQF-RSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNF 362 (364)
Q Consensus 307 --~~~-~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R 362 (364)
... ...++.+.+++||+++++|+ +++++.+++++|++ .++|+|||+++.+
T Consensus 487 ~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~lieV~v~~ 539 (563)
T PRK08527 487 SETDLSTQPDFVKLAESFGGIGFRVT--TKEEFDKALKEALE----SDKVALIDVKIDR 539 (563)
T ss_pred eeccCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh----CCCCEEEEEEECC
Confidence 011 23589999999999999997 78899999988875 5789999999874
No 107
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=99.52 E-value=9.9e-14 Score=145.23 Aligned_cols=114 Identities=16% Similarity=0.120 Sum_probs=92.1
Q ss_pred CCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCC-cccc------c--ccc
Q 017890 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNG-WAIS------T--NIS 306 (364)
Q Consensus 236 sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg-~ais------~--~~~ 306 (364)
.|+||+++|.|+|+++| ++++||+++|||++++. ..| |.+|+++++|+++||.||+ |... . +..
T Consensus 416 ~gsmG~~lpaaiGaala-----~~~~vv~i~GDGsf~m~-~~E-L~Ta~r~~l~v~~vV~NN~~~~~~~~~~~~~~~~~~ 488 (554)
T TIGR03254 416 WGVMGIGMGYAIAAAVE-----TGKPVVALEGDSAFGFS-GME-VETICRYNLPVCVVIFNNGGIYRGDDVNVVGADPAP 488 (554)
T ss_pred CCcCCchHHHHHHHHhc-----CCCcEEEEEcCchhccc-HHH-HHHHHHcCCCEEEEEEeChhhhhhhhhhhcCCCCCc
Confidence 48999999999999997 26789999999999985 556 9999999999988888886 4111 0 000
Q ss_pred cc-cCCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q 017890 307 EQ-FRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNF 362 (364)
Q Consensus 307 ~~-~~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R 362 (364)
.. ....++++.|++||+++.+|+ +++++.+++++|++ .++|+|||+++-+
T Consensus 489 ~~~~~~~df~~la~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~lIev~id~ 539 (554)
T TIGR03254 489 TVLVHGARYDKMMKAFGGVGYNVT--TPDELKAALNEALA----SGKPTLINAVIDP 539 (554)
T ss_pred cccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEECC
Confidence 11 134689999999999999997 79999999998875 5789999999864
No 108
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.52 E-value=8.9e-14 Score=146.24 Aligned_cols=116 Identities=23% Similarity=0.316 Sum_probs=92.9
Q ss_pred CCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcC-Cccccccc---------
Q 017890 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNN-GWAISTNI--------- 305 (364)
Q Consensus 236 sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NN-g~ais~~~--------- 305 (364)
.|+||+++|.|+|+++|. ++++||+++|||++++. ..| |.+|.++++|+++||.|| +|++....
T Consensus 422 ~gsmG~glpaAiGa~la~----p~r~Vv~i~GDG~f~m~-~~e-L~Ta~r~~lpv~ivV~NN~~y~~i~~~q~~~~~~~~ 495 (574)
T PRK06466 422 LGTMGFGLPAAMGVKLAF----PDQDVACVTGEGSIQMN-IQE-LSTCLQYGLPVKIINLNNGALGMVRQWQDMQYEGRH 495 (574)
T ss_pred cchhhchHHHHHHHHHhC----CCCeEEEEEcchhhhcc-HHH-HHHHHHhCCCeEEEEEeCCccHHHHHHHHHhcCCce
Confidence 489999999999999884 67899999999999984 555 999999999997777766 47653210
Q ss_pred ccc--cCCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q 017890 306 SEQ--FRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNF 362 (364)
Q Consensus 306 ~~~--~~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R 362 (364)
... ....++++.|++||+++.+|+ +++++.+++++|.+. .++|+|||+++-+
T Consensus 496 ~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~~---~~~p~lIev~i~~ 549 (574)
T PRK06466 496 SHSYMESLPDFVKLAEAYGHVGIRIT--DLKDLKPKLEEAFAM---KDRLVFIDIYVDR 549 (574)
T ss_pred eecCCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhc---CCCcEEEEEEeCC
Confidence 001 123589999999999999997 789999999988752 2789999999853
No 109
>PRK08273 thiamine pyrophosphate protein; Provisional
Probab=99.52 E-value=9.9e-14 Score=146.67 Aligned_cols=116 Identities=22% Similarity=0.281 Sum_probs=93.5
Q ss_pred CCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHc-----CCCEEEEEEcCC-ccccccc----
Q 017890 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVM-----EAPVVFICRNNG-WAISTNI---- 305 (364)
Q Consensus 236 sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~-----~LPvIfVV~NNg-~ais~~~---- 305 (364)
.|+||+++|.|+|+++|. ++++|||++|||++++....| |.+|.++ ++|+++||.||+ |++....
T Consensus 414 ~g~mG~glpaaiGa~la~----p~~~Vv~i~GDG~f~m~~~~E-L~Ta~r~~~~~~~lpviivV~NN~~~~~i~~~q~~~ 488 (597)
T PRK08273 414 LATMGPAVPYAIAAKFAH----PDRPVIALVGDGAMQMNGMAE-LITVAKYWRQWSDPRLIVLVLNNRDLNQVTWEQRVM 488 (597)
T ss_pred cccccchHHHHHHHHHhC----CCCcEEEEEcchhHhccchHH-HHHHHHHhhcccCCCEEEEEEeCCcchHHHHHHHHh
Confidence 489999999999999884 678999999999998753455 9999999 899988887775 7543211
Q ss_pred -----c---cccCCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q 017890 306 -----S---EQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNF 362 (364)
Q Consensus 306 -----~---~~~~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R 362 (364)
. ......|+++.|++||+++++|+ +.+++..++++|.+ .++|+|||+++.+
T Consensus 489 ~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~eL~~al~~a~~----~~~p~lIeV~~~~ 547 (597)
T PRK08273 489 EGDPKFEASQDLPDVPYARFAELLGLKGIRVD--DPEQLGAAWDEALA----ADRPVVLEVKTDP 547 (597)
T ss_pred cCCCcccccccCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHh----CCCCEEEEEEeCC
Confidence 0 01134679999999999999998 78999999998876 5899999999854
No 110
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=99.52 E-value=4.6e-14 Score=148.84 Aligned_cols=118 Identities=18% Similarity=0.251 Sum_probs=94.2
Q ss_pred cCCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcC-Ccccccccc-------
Q 017890 235 ISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNN-GWAISTNIS------- 306 (364)
Q Consensus 235 ~sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NN-g~ais~~~~------- 306 (364)
..|+||+++|.|+|+++|. ++++||+++|||+++++ ..| |.+|.++++|+++||.|| +|++.....
T Consensus 433 ~~g~mG~glp~aiGa~la~----p~r~vv~i~GDG~f~~~-~~e-l~Ta~~~~lpv~ivV~NN~~y~~~~~~~~~~~~~~ 506 (588)
T PRK07525 433 SFGNCGYAFPAIIGAKIAC----PDRPVVGFAGDGAWGIS-MNE-VMTAVRHNWPVTAVVFRNYQWGAEKKNQVDFYNNR 506 (588)
T ss_pred cccccccHHHHHHHHHHhC----CCCcEEEEEcCchHhcc-HHH-HHHHHHhCCCeEEEEEeCchhHHHHHHHHHHhCCC
Confidence 3489999999999998874 67899999999999986 556 889999999998777666 686532100
Q ss_pred ---ccc-CCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEee
Q 017890 307 ---EQF-RSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLN 361 (364)
Q Consensus 307 ---~~~-~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~ 361 (364)
... ...++.+.|++||+++++|+ +++++.++++++++.. +.++|+|||+.+-
T Consensus 507 ~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~~~-~~~~p~lIev~~~ 562 (588)
T PRK07525 507 FVGTELDNNVSYAGIAEAMGAEGVVVD--TQEELGPALKRAIDAQ-NEGKTTVIEIMCN 562 (588)
T ss_pred cccccCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhcC-CCCCcEEEEEEec
Confidence 011 23589999999999999997 7899999999998743 2368999999985
No 111
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=99.51 E-value=7.5e-14 Score=146.17 Aligned_cols=114 Identities=23% Similarity=0.363 Sum_probs=92.5
Q ss_pred CCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCC-cccccc------c---
Q 017890 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNG-WAISTN------I--- 305 (364)
Q Consensus 236 sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg-~ais~~------~--- 305 (364)
.|+||+++|.|+|+++|. ++++||+++|||++++. ..| |.+|.++++|+++||.||+ |++... .
T Consensus 411 ~g~mG~~l~aaiGa~la~----~~~~vv~~~GDG~f~~~-~~e-L~ta~~~~l~~~~vv~NN~~~~~~~~~q~~~~~~~~ 484 (558)
T TIGR00118 411 LGTMGFGLPAAIGAKVAK----PESTVICITGDGSFQMN-LQE-LSTAVQYDIPVKILILNNRYLGMVRQWQELFYEERY 484 (558)
T ss_pred cccccchhhHHHhhhhhC----CCCcEEEEEcchHHhcc-HHH-HHHHHHhCCCeEEEEEeCCchHHHHHHHHHhcCCce
Confidence 478999999999998874 67899999999999984 555 9999999999988888887 443210 0
Q ss_pred -c-cccCCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEee
Q 017890 306 -S-EQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLN 361 (364)
Q Consensus 306 -~-~~~~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~ 361 (364)
. ......++++.+++||+++++|+ +.+++.++++++++ .++|+|||+++.
T Consensus 485 ~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~~l~~al~~a~~----~~~p~liev~~~ 536 (558)
T TIGR00118 485 SHTHMGSLPDFVKLAEAYGIKGIRIE--KPEELDEKLKEALS----SNEPVLLDVVVD 536 (558)
T ss_pred eeccCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh----CCCCEEEEEEeC
Confidence 0 11124689999999999999998 58899999988876 479999999985
No 112
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=99.51 E-value=9.1e-14 Score=145.25 Aligned_cols=115 Identities=18% Similarity=0.283 Sum_probs=92.5
Q ss_pred CCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcC-Cccccccc-----c---
Q 017890 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNN-GWAISTNI-----S--- 306 (364)
Q Consensus 236 sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NN-g~ais~~~-----~--- 306 (364)
.|+||+++|.|+|+++|. ++++||+++|||+|++. ..| |.+|.++++|+++||.|| +|++.... .
T Consensus 400 ~g~mG~glpaAiGa~la~----p~~~vv~i~GDG~f~~~-~~e-L~ta~~~~l~v~ivV~NN~~~~~~~~~~~~~~~~~~ 473 (548)
T PRK08978 400 LGTMGFGLPAAIGAQVAR----PDDTVICVSGDGSFMMN-VQE-LGTIKRKQLPVKIVLLDNQRLGMVRQWQQLFFDERY 473 (548)
T ss_pred hhhhhchHHHHHHHHHhC----CCCcEEEEEccchhhcc-HHH-HHHHHHhCCCeEEEEEeCCccHHHHHHHHHHhCCcc
Confidence 389999999999998884 67899999999999984 455 999999999997766666 57653211 0
Q ss_pred --ccc-CCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q 017890 307 --EQF-RSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNF 362 (364)
Q Consensus 307 --~~~-~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R 362 (364)
... ...|+++.|++||+++.+|+ +++++.+++++|++ .++|.|||+++-+
T Consensus 474 ~~~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~lIeV~id~ 526 (548)
T PRK08978 474 SETDLSDNPDFVMLASAFGIPGQTIT--RKDQVEAALDTLLN----SEGPYLLHVSIDE 526 (548)
T ss_pred eecCCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh----CCCCEEEEEEecC
Confidence 001 23689999999999999997 78999999988875 5789999999864
No 113
>cd02018 TPP_PFOR Thiamine pyrophosphate (TPP family), Pyruvate ferredoxin/flavodoxin oxidoreductase (PFOR) subfamily, TPP-binding module; PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. PFORs can be homodimeric, heterodimeric, or heterotetrameric, depending on the organism. These enzymes are dependent on TPP and a divalent metal cation as cofactors.
Probab=99.50 E-value=7e-14 Score=132.26 Aligned_cols=119 Identities=16% Similarity=0.199 Sum_probs=89.8
Q ss_pred cCCCcccchhHHHHHHHHh-hhccCCCeEEEEeCCCccc-cccHHHHHHHHHHcCCCEEEEEEcCC-cccccccc-----
Q 017890 235 ISSPIATQLPQAVGVAYSL-KMEKKDACAVAYTGDGGTS-EGDFHAALNFAAVMEAPVVFICRNNG-WAISTNIS----- 306 (364)
Q Consensus 235 ~sg~LG~~lp~AvG~A~A~-k~~~~~~~vv~~~GDGa~~-eG~~~EALn~Aa~~~LPvIfVV~NNg-~ais~~~~----- 306 (364)
..++||+++|.|+|+++|. +...++++|||+.|||++. +| +.+ +..+..+++|+++||.||+ |+...-..
T Consensus 62 ~~g~mG~GlpaAiGA~~a~~~~~~p~~~Vv~i~GDG~~~~~g-~~~-l~ta~~~~l~i~ivVlNN~~yg~~~~q~~~~~~ 139 (237)
T cd02018 62 DANAVASGLKRGLKARFPKDRELDKKKDVVVIGGDGATYDIG-FGA-LSHSLFRGEDITVIVLDNEVYSNTGGQRSGATP 139 (237)
T ss_pred CHHHHHHHHHHHHHhhcccccccCCCCcEEEEeCchHHHhcc-HHH-HHHHHHcCCCeEEEEECCccccCCCCCCCCCCc
Confidence 3489999999999998771 1113678999999999985 44 555 6778889999988888886 55432111
Q ss_pred -----------cccCCccHHHHHhhcCeEEEE---EeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEe
Q 017890 307 -----------EQFRSDGIVVKGRAYGIRSIR---VDGNDALAVYTAVQAAREMAISEKRPVLVEVRL 360 (364)
Q Consensus 307 -----------~~~~~~~ia~~a~a~G~~~~~---VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T 360 (364)
......|+++.|++||+++++ |+ +++++.+++++|++ +.++|+|||+.+
T Consensus 140 ~g~~~~~~~~~~~~~~~D~~~iA~a~G~~~~~~~~v~--~~~~l~~al~~al~---~~~GP~lI~v~i 202 (237)
T cd02018 140 LGADSKMAPAGKKEDKKDLVLIAATHGCVYVARLSPA--LKKHFLKVVKEAIS---RTDGPTFIHAYT 202 (237)
T ss_pred CCCcccccCCCCcCCCCCHHHHHHHCCCCEEEEEccC--CHHHHHHHHHHHHh---cCCCCEEEEEeC
Confidence 012346899999999999986 65 68999999988875 257899999984
No 114
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=99.50 E-value=1.8e-13 Score=143.81 Aligned_cols=113 Identities=17% Similarity=0.128 Sum_probs=91.7
Q ss_pred CCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCC-c--ccc----c---cc
Q 017890 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNG-W--AIS----T---NI 305 (364)
Q Consensus 236 sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg-~--ais----~---~~ 305 (364)
.|+||+++|.|+|+++| ++++||+++|||++++. ..| |.+|.++++|+++||.||+ | ... . +.
T Consensus 423 ~gsmG~glpaaiGa~la-----~~~~vv~i~GDG~f~m~-~~E-L~Ta~r~~lpi~~vV~NN~~~~~~~~~~~~~~~~~~ 495 (569)
T PRK09259 423 WGVMGIGMGYAIAAAVE-----TGKPVVAIEGDSAFGFS-GME-VETICRYNLPVTVVIFNNGGIYRGDDVNLSGAGDPS 495 (569)
T ss_pred CccccccHHHHHHHHhc-----CCCcEEEEecCcccccc-HHH-HHHHHHcCCCEEEEEEeChhHHHHHHHHhhcCCCcc
Confidence 48999999999999987 26789999999999984 555 9999999999999988887 3 110 0 00
Q ss_pred ccc-cCCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEee
Q 017890 306 SEQ-FRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLN 361 (364)
Q Consensus 306 ~~~-~~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~ 361 (364)
... ....++++.|++||+++++|+ +++++.+++++|++ .++|+|||+++-
T Consensus 496 ~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~lIev~id 546 (569)
T PRK09259 496 PTVLVHHARYDKMMEAFGGVGYNVT--TPDELRHALTEAIA----SGKPTLINVVID 546 (569)
T ss_pred ccccCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh----CCCCEEEEEEEC
Confidence 011 135689999999999999997 78999999998875 578999999975
No 115
>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase.
Probab=99.49 E-value=1.2e-13 Score=144.49 Aligned_cols=115 Identities=17% Similarity=0.185 Sum_probs=91.2
Q ss_pred CCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcC-Ccccccccc-----ccc
Q 017890 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNN-GWAISTNIS-----EQF 309 (364)
Q Consensus 236 sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NN-g~ais~~~~-----~~~ 309 (364)
.++||+++|.|+|+++|. ++++|+++|||++++. .+| |.+|.++++|+++||.|| +|++....+ ...
T Consensus 402 ~g~mG~glpaaiGa~lA~-----~~r~v~i~GDG~f~m~-~~E-L~Ta~r~~lpv~~vV~NN~~y~~~~~~~~~~~~~~~ 474 (535)
T TIGR03394 402 YAGMGFGVPAGIGAQCTS-----GKRILTLVGDGAFQMT-GWE-LGNCRRLGIDPIVILFNNASWEMLRVFQPESAFNDL 474 (535)
T ss_pred cchhhhHHHHHHHHHhCC-----CCCeEEEEeChHHHhH-HHH-HHHHHHcCCCcEEEEEECCccceeehhccCCCcccC
Confidence 489999999999999884 3456889999999984 555 999999999987777766 577643211 112
Q ss_pred CCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q 017890 310 RSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNF 362 (364)
Q Consensus 310 ~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R 362 (364)
...++++.|++||+++.+|+ +.+++.+++++|++ ..++|+|||+++-+
T Consensus 475 ~~~d~~~lA~a~G~~~~~v~--~~~eL~~al~~a~~---~~~~p~lIev~i~~ 522 (535)
T TIGR03394 475 DDWRFADMAAGMGGDGVRVR--TRAELAAALDKAFA---TRGRFQLIEAMLPR 522 (535)
T ss_pred CCCCHHHHHHHcCCCceEeC--CHHHHHHHHHHHHh---cCCCeEEEEEECCc
Confidence 34689999999999999998 78999999998875 24568999998754
No 116
>PRK09628 oorB 2-oxoglutarate-acceptor oxidoreductase subunit OorB; Reviewed
Probab=99.48 E-value=1.7e-13 Score=132.61 Aligned_cols=112 Identities=16% Similarity=0.146 Sum_probs=86.2
Q ss_pred CCcccchhHHHHHHHHhhhccCCCeEEEEeCCCcccc-ccHHHHHHHHHHcCCCEEEEEEcCC-ccccccccc-------
Q 017890 237 SPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSE-GDFHAALNFAAVMEAPVVFICRNNG-WAISTNISE------- 307 (364)
Q Consensus 237 g~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~e-G~~~EALn~Aa~~~LPvIfVV~NNg-~ais~~~~~------- 307 (364)
+++|.++|.|+|+++|. +++.||++.|||++.+ | ..| +.+|+++++|+++||.||+ |++......
T Consensus 68 ~~~G~alPaAiGaklA~----Pdr~VV~i~GDG~f~~~g-~~e-l~ta~r~nlpi~iIV~NN~~yGmt~~Q~~~~t~~g~ 141 (277)
T PRK09628 68 TTHGRAVAYATGIKLAN----PDKHVIVVSGDGDGLAIG-GNH-TIHGCRRNIDLNFILINNFIYGLTNSQTSPTTPKGM 141 (277)
T ss_pred eccccHHHHHHHHHHHC----CCCeEEEEECchHHHHhh-HHH-HHHHHHhCcCeEEEEEEChHHhcceecccCCCCCCc
Confidence 47899999999998874 7899999999999853 3 223 6679999999988888775 665321000
Q ss_pred -----cc----CCccHHHHHhhcCeEEE---EEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEe
Q 017890 308 -----QF----RSDGIVVKGRAYGIRSI---RVDGNDALAVYTAVQAAREMAISEKRPVLVEVRL 360 (364)
Q Consensus 308 -----~~----~~~~ia~~a~a~G~~~~---~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T 360 (364)
.. ...|+++.|++||++++ +|+ +++++.+++++|++ .++|+|||+.+
T Consensus 142 ~~~~~~~g~~~~~~D~~~lA~a~G~~~va~~~v~--~~~el~~al~~Al~----~~Gp~lIeV~~ 200 (277)
T PRK09628 142 WTVTAQYGNIDPTFDACKLATAAGASFVARESVI--DPQKLEKLLVKGFS----HKGFSFFDVFS 200 (277)
T ss_pred eeeeccCCCcCCCCCHHHHHHHCCCceEEEEccC--CHHHHHHHHHHHHh----CCCCEEEEEcC
Confidence 01 12367999999999975 565 79999999999886 58999999976
No 117
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=99.47 E-value=1.5e-13 Score=145.63 Aligned_cols=116 Identities=22% Similarity=0.325 Sum_probs=92.1
Q ss_pred CCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCC-ccccccc---------
Q 017890 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNG-WAISTNI--------- 305 (364)
Q Consensus 236 sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg-~ais~~~--------- 305 (364)
.|+||+++|.|+|+++|. +++.|||++|||++++. .. +|.+|.++++|+++||.||+ |++....
T Consensus 446 ~G~mG~glpaaiGa~la~----p~~~Vv~i~GDG~f~m~-~~-eL~Ta~~~~lpv~ivV~NN~~~g~i~~~q~~~~~~~~ 519 (612)
T PRK07789 446 LGTMGYAVPAAMGAKVGR----PDKEVWAIDGDGCFQMT-NQ-ELATCAIEGIPIKVALINNGNLGMVRQWQTLFYEERY 519 (612)
T ss_pred cccccchhhhHHhhhccC----CCCcEEEEEcchhhhcc-HH-HHHHHHHcCCCeEEEEEECCchHHHHHHHHHhhCCCc
Confidence 478999999999998874 67899999999999984 44 49999999999877766664 7653210
Q ss_pred -cccc-----CCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q 017890 306 -SEQF-----RSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNF 362 (364)
Q Consensus 306 -~~~~-----~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R 362 (364)
.... ...|+++.|++||+++.+|+ +.+++.+++++|++. .++|+|||+++.+
T Consensus 520 ~~~~~~~~~~~~~d~~~lA~a~G~~~~~V~--~~~eL~~al~~a~~~---~~~p~lIev~i~~ 577 (612)
T PRK07789 520 SNTDLHTHSHRIPDFVKLAEAYGCVGLRCE--REEDVDAVIEKARAI---NDRPVVIDFVVGK 577 (612)
T ss_pred ceeecCcCCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhc---CCCcEEEEEEECC
Confidence 0011 12589999999999999997 789999999998863 3689999999854
No 118
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=99.45 E-value=5.4e-13 Score=140.72 Aligned_cols=114 Identities=24% Similarity=0.361 Sum_probs=92.1
Q ss_pred CCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCC-ccccccc---------
Q 017890 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNG-WAISTNI--------- 305 (364)
Q Consensus 236 sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg-~ais~~~--------- 305 (364)
.|+||+++|.|+|+++|. +++.|||++|||++++. ..| |.+|.++++|+++||.||+ |++....
T Consensus 418 ~gsmG~~lpaaiGa~la~----p~~~Vv~i~GDGsf~m~-~~e-L~Ta~~~~lpv~~vV~NN~~~g~~~~~~~~~~~~~~ 491 (586)
T PRK06276 418 LGTMGFGFPAAIGAKVAK----PDANVIAITGDGGFLMN-SQE-LATIAEYDIPVVICIFDNRTLGMVYQWQNLYYGKRQ 491 (586)
T ss_pred ccccccchhHHHhhhhhc----CCCcEEEEEcchHhhcc-HHH-HHHHHHhCCCeEEEEEeCCchHHHHHHHHHHhCCCc
Confidence 479999999999998884 67789999999999985 455 9999999999987777775 7653211
Q ss_pred c-ccc-CCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEee
Q 017890 306 S-EQF-RSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLN 361 (364)
Q Consensus 306 ~-~~~-~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~ 361 (364)
. ... ...++++.+++||+++.+|+ +++++.+++++|++ .++|+|||+.+-
T Consensus 492 ~~~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~lIeV~i~ 543 (586)
T PRK06276 492 SEVHLGETPDFVKLAESYGVKADRVE--KPDEIKEALKEAIK----SGEPYLLDIIID 543 (586)
T ss_pred ccccCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh----CCCCEEEEEEec
Confidence 0 011 23689999999999999997 78999999988875 578999999985
No 119
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=99.45 E-value=3.9e-13 Score=141.31 Aligned_cols=114 Identities=20% Similarity=0.378 Sum_probs=90.1
Q ss_pred CCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcC-Cccccccc---------
Q 017890 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNN-GWAISTNI--------- 305 (364)
Q Consensus 236 sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NN-g~ais~~~--------- 305 (364)
.|+||+++|.|+|+++|. +++.||+++|||++++. ..| |.+|.++++|+++||.|| +|++....
T Consensus 417 ~g~mG~glpaaiGa~lA~----p~~~Vv~i~GDG~f~m~-~~e-L~Ta~~~~l~i~~vV~NN~~y~~i~~~q~~~~~~~~ 490 (566)
T PRK07282 417 LGTMGFGIPAAIGAKIAN----PDKEVILFVGDGGFQMT-NQE-LAILNIYKVPIKVVMLNNHSLGMVRQWQESFYEGRT 490 (566)
T ss_pred cccccchhhHhheeheec----CCCcEEEEEcchhhhcc-HHH-HHHHHHhCCCeEEEEEeCCCchHHHHHHHHHhCCCc
Confidence 489999999999998874 68899999999999984 455 999999999987776666 47653211
Q ss_pred -cccc-CCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q 017890 306 -SEQF-RSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNF 362 (364)
Q Consensus 306 -~~~~-~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R 362 (364)
...+ ...++++.|++||+++.+|+ +++++.++++ +.+ .++|+|||+.+-+
T Consensus 491 ~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~-~~~----~~~p~lIeV~v~~ 542 (566)
T PRK07282 491 SESVFDTLPDFQLMAQAYGIKHYKFD--NPETLAQDLE-VIT----EDVPMLIEVDISR 542 (566)
T ss_pred ccccCCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHH-Hhc----CCCCEEEEEEeCC
Confidence 1112 24689999999999999997 6889988885 332 4799999998854
No 120
>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated
Probab=99.45 E-value=1.6e-13 Score=143.88 Aligned_cols=114 Identities=22% Similarity=0.209 Sum_probs=90.1
Q ss_pred CCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCC-ccccccc----c----
Q 017890 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNG-WAISTNI----S---- 306 (364)
Q Consensus 236 sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg-~ais~~~----~---- 306 (364)
.++||+++|.|+|+++| ++++|||++|||++++. ..| |.+|+++++|+++||.||+ |++..-. .
T Consensus 424 ~~~~G~~lpaaiGaala-----~~~~vv~i~GDGsf~~~-~~e-L~Ta~r~~l~i~ivVlNN~g~~~~~~~~~~~~~~~~ 496 (568)
T PRK07449 424 ASGIDGLLSTAAGVARA-----SAKPTVALIGDLSFLHD-LNG-LLLLKQVPAPLTIVVVNNNGGGIFSLLPQPEEEPVF 496 (568)
T ss_pred ccchhhHHHHHHHHHhc-----CCCCEEEEechHHhhcC-cHH-HHhhcccCCCeEEEEEECCCCccccCCCCCCCcchh
Confidence 36799999999999887 36789999999999975 445 9999999999877777665 6642110 0
Q ss_pred ----cccCCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q 017890 307 ----EQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNF 362 (364)
Q Consensus 307 ----~~~~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R 362 (364)
......++++.|++||+++.+|+ +.+++.+++++|++ .++|+|||+++-+
T Consensus 497 ~~~~~~~~~~df~~lA~a~G~~~~~V~--~~~eL~~al~~a~~----~~~p~lIev~id~ 550 (568)
T PRK07449 497 ERFFGTPHGVDFAHAAAMYGLEYHRPE--TWAELEEALADALP----TPGLTVIEVKTNR 550 (568)
T ss_pred hHhhcCCCCCCHHHHHHHcCCCccCCC--CHHHHHHHHHHHhc----CCCCEEEEEeCCh
Confidence 01124689999999999999997 78999999988864 5799999999853
No 121
>PRK05778 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Validated
Probab=99.44 E-value=8.2e-13 Score=129.18 Aligned_cols=114 Identities=18% Similarity=0.165 Sum_probs=88.8
Q ss_pred CCcccchhHHHHHHHHhhhccCCCeEEEEeCCCcc-ccccHHHHHHHHHHcCCCEEEEEEcCC-cccccccc--------
Q 017890 237 SPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGT-SEGDFHAALNFAAVMEAPVVFICRNNG-WAISTNIS-------- 306 (364)
Q Consensus 237 g~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~-~eG~~~EALn~Aa~~~LPvIfVV~NNg-~ais~~~~-------- 306 (364)
+++|.++|+|+|+++| ++++.||++.|||++ ++| ..| |.+|+++++|+++||.||+ |+......
T Consensus 70 g~mG~alpaAiGaklA----~pd~~VV~i~GDG~~~~mg-~~e-L~tA~r~nl~i~vIV~NN~~YG~t~gQ~s~t~~~g~ 143 (301)
T PRK05778 70 TLHGRAIAFATGAKLA----NPDLEVIVVGGDGDLASIG-GGH-FIHAGRRNIDITVIVENNGIYGLTKGQASPTTPEGS 143 (301)
T ss_pred hhhccHHHHHHHHHHH----CCCCcEEEEeCccHHHhcc-HHH-HHHHHHHCCCcEEEEEeCchhhcccCcccCCcCCCc
Confidence 7789999999999887 478899999999997 565 444 8999999999988888776 65432110
Q ss_pred --------cccCCccHHHHHhhcCeEEE-EEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEe
Q 017890 307 --------EQFRSDGIVVKGRAYGIRSI-RVDGNDALAVYTAVQAAREMAISEKRPVLVEVRL 360 (364)
Q Consensus 307 --------~~~~~~~ia~~a~a~G~~~~-~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T 360 (364)
......++...|+++|+..+ ++.-.++.++.+++++|++ .++|+|||+.+
T Consensus 144 ~~~~~~~g~~~~~~d~~~lA~a~G~~~va~~~v~~~~eL~~ai~~A~~----~~GpalIeV~~ 202 (301)
T PRK05778 144 KTKTAPYGNIEPPIDPCALALAAGATFVARSFAGDVKQLVELIKKAIS----HKGFAFIDVLS 202 (301)
T ss_pred ccccccCCCcCCCCCHHHHHHHCCCCEEEEeccCCHHHHHHHHHHHHh----CCCCEEEEEcC
Confidence 00123589999999999986 3344489999999999886 58899999864
No 122
>PRK11869 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=99.43 E-value=1e-12 Score=127.31 Aligned_cols=166 Identities=13% Similarity=0.091 Sum_probs=114.2
Q ss_pred cCccc-ccccCCchhHHHHHHHhhc-----CCCcEEEccCCchhHHHhcCCCHHHHHHHHhcCCCCCCCCCCCccccCCC
Q 017890 155 QGRFS-FYLTTIGEEAINIGSAAAL-----SADDFILPQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSK 228 (364)
Q Consensus 155 qGri~-f~~~~~GqEa~~vg~a~aL-----~~~D~v~~~yR~~g~ll~rG~~~~~~l~~~~g~~~~~~~Gr~mp~H~~~~ 228 (364)
.-|+. .|.+..|+=.+.-++..|+ .|+|.++.+ |-|..- .+..++.
T Consensus 3 ~~~~~~~~CpGCg~~~i~~~~~~a~~~l~~~p~d~ivvs--diG~~~--------~~~~~~~------------------ 54 (280)
T PRK11869 3 PEKYDIAWCPGCGNFGIRNALMKALSELNLKPRQVVIVS--GIGQAA--------KMPHYIN------------------ 54 (280)
T ss_pred cccCCCCCCcCCCCHHHHHHHHHHHHHcCCCCCCEEEEe--CchHhh--------hHHHHcc------------------
Confidence 34453 5777888888877776665 367777665 112100 0112211
Q ss_pred cccccccCCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCC-ccccc----
Q 017890 229 KLNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNG-WAIST---- 303 (364)
Q Consensus 229 ~~~~~~~sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg-~ais~---- 303 (364)
.....+.+|.++|.|+|+++| ++++.||++.|||++..--+.| |.+|+++++|+++||.||+ |++..
T Consensus 55 ---~~~~~~~mG~alp~AiGaklA----~pd~~VVai~GDG~~~~iG~~e-L~tA~r~nl~i~~IV~NN~~Yg~t~~Q~s 126 (280)
T PRK11869 55 ---VNGFHTLHGRAIPAATAVKAT----NPELTVIAEGGDGDMYAEGGNH-LIHAIRRNPDITVLVHNNQVYGLTKGQAS 126 (280)
T ss_pred ---CCCCCcccccHHHHHHHHHHH----CCCCcEEEEECchHHhhCcHHH-HHHHHHhCcCcEEEEEECHHHhhhcceec
Confidence 011225589999999999776 4788999999999986322444 9999999999998888886 65422
Q ss_pred ---cc---------ccccCCccHHHHHhhcCeEEEEE-eCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEe
Q 017890 304 ---NI---------SEQFRSDGIVVKGRAYGIRSIRV-DGNDALAVYTAVQAAREMAISEKRPVLVEVRL 360 (364)
Q Consensus 304 ---~~---------~~~~~~~~ia~~a~a~G~~~~~V-DGnD~~av~~a~~~A~~~ar~~~~P~LIea~T 360 (364)
+. .......|+.+.|+++|++.+.. +-.++.++.+++++|++ .++|+|||+.+
T Consensus 127 ~~t~~g~~~~~~p~g~~~~~~D~~~lA~a~G~~~va~~~~~~~~~l~~~i~~Al~----~~Gp~lIeV~~ 192 (280)
T PRK11869 127 PTTLKGFKTPTQPWGVFEEPFNPIALAIALDASFVARTFSGDIEETKEILKEAIK----HKGLAIVDIFQ 192 (280)
T ss_pred CCCCCCcccccCCCCccCCCCCHHHHHHHCCCCEEEEeCCCCHHHHHHHHHHHHh----CCCCEEEEEEC
Confidence 11 00112358999999999998873 24489999999999987 57999999875
No 123
>PRK11867 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Reviewed
Probab=99.39 E-value=2.5e-12 Score=124.96 Aligned_cols=114 Identities=18% Similarity=0.158 Sum_probs=87.7
Q ss_pred CCcccchhHHHHHHHHhhhccCCCeEEEEeCCCc-cccccHHHHHHHHHHcCCCEEEEEEcCC-cccccccc-------c
Q 017890 237 SPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGG-TSEGDFHAALNFAAVMEAPVVFICRNNG-WAISTNIS-------E 307 (364)
Q Consensus 237 g~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa-~~eG~~~EALn~Aa~~~LPvIfVV~NNg-~ais~~~~-------~ 307 (364)
+++|.++|.|+|+++| ++++.||++.|||+ +++| ..| |..|+++++|+++||.||+ |++..... .
T Consensus 69 g~mG~alpaAiGaklA----~Pd~~VV~i~GDG~~f~mg-~~e-L~tA~r~nl~i~vIV~NN~~yGmt~~q~s~tt~~g~ 142 (286)
T PRK11867 69 TIHGRALAIATGLKLA----NPDLTVIVVTGDGDALAIG-GNH-FIHALRRNIDITYILFNNQIYGLTKGQYSPTSPVGF 142 (286)
T ss_pred hhhhcHHHHHHHHHHh----CCCCcEEEEeCccHHHhCC-HHH-HHHHHHhCCCcEEEEEeCHHHhhhcCccCCCCCCCc
Confidence 6899999999999887 47899999999995 8876 444 8899999999988887775 66532110 0
Q ss_pred c-----c----CCccHHHHHhhcCeEEEE-EeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEe
Q 017890 308 Q-----F----RSDGIVVKGRAYGIRSIR-VDGNDALAVYTAVQAAREMAISEKRPVLVEVRL 360 (364)
Q Consensus 308 ~-----~----~~~~ia~~a~a~G~~~~~-VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T 360 (364)
. . ...++.+.|.++|...+. +.-.++.++.+++++|++ .++|+|||+.+
T Consensus 143 ~~~~~~~g~~~~~~d~~~lA~a~Ga~~va~~~~~~~~el~~al~~Al~----~~Gp~lIev~~ 201 (286)
T PRK11867 143 VTKTTPYGSIEPPFNPVELALGAGATFVARGFDSDVKQLTELIKAAIN----HKGFSFVEILQ 201 (286)
T ss_pred ccccccCCCCCCCCCHHHHHHHCCCcEEEEecCCCHHHHHHHHHHHHh----CCCCEEEEEeC
Confidence 0 0 124688899999998763 344579999999999886 57899999874
No 124
>PRK11866 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=99.35 E-value=7.9e-12 Score=121.08 Aligned_cols=115 Identities=21% Similarity=0.261 Sum_probs=89.9
Q ss_pred CCCcccchhHHHHHHHHhhhccCCCeEEEEeCCC-ccccccHHHHHHHHHHcCCCEEEEEEcCC-cccccccc-------
Q 017890 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDG-GTSEGDFHAALNFAAVMEAPVVFICRNNG-WAISTNIS------- 306 (364)
Q Consensus 236 sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDG-a~~eG~~~EALn~Aa~~~LPvIfVV~NNg-~ais~~~~------- 306 (364)
.+.+|.++|+|+|+++| .+++.||++.||| ++.+| ..| |..|+++++|+++||.||+ |+...-..
T Consensus 58 ~~~~G~alp~A~GaklA----~Pd~~VV~i~GDG~~f~ig-~~e-L~tA~rrn~~i~vIV~nN~~ygmtggQ~s~~t~~g 131 (279)
T PRK11866 58 HGIHGRVLPIATGVKWA----NPKLTVIGYGGDGDGYGIG-LGH-LPHAARRNVDITYIVSNNQVYGLTTGQASPTTPRG 131 (279)
T ss_pred ccccccHHHHHHHHHHH----CCCCcEEEEECChHHHHcc-HHH-HHHHHHHCcCcEEEEEEChhhhhhcccccCCCCCC
Confidence 47789999999999888 4788999999999 68887 444 9999999999988888886 55533111
Q ss_pred cc-----c----CCccHHHHHhhcCeEEEE-EeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEe
Q 017890 307 EQ-----F----RSDGIVVKGRAYGIRSIR-VDGNDALAVYTAVQAAREMAISEKRPVLVEVRL 360 (364)
Q Consensus 307 ~~-----~----~~~~ia~~a~a~G~~~~~-VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T 360 (364)
.. . ...++.+.|+++|+..+. ....++.++.+++++|++ .++|.+||+..
T Consensus 132 ~~t~~t~~g~~~~~~d~~~iA~a~G~~~Va~~~~~~~~~l~~~l~~Al~----~~Gps~I~v~~ 191 (279)
T PRK11866 132 VKTKTTPDGNIEEPFNPIALALAAGATFVARGFSGDVKHLKEIIKEAIK----HKGFSFIDVLS 191 (279)
T ss_pred ceeeccCCCCCCCCCCHHHHHHHCCCCEEEEEcCCCHHHHHHHHHHHHh----CCCCEEEEEeC
Confidence 00 0 012889999999997664 455789999999999886 58999999874
No 125
>TIGR02177 PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family. Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of beta subunits, representing mostly pyruvate and 2-ketoisovalerate specific enzymes.
Probab=99.34 E-value=7.2e-12 Score=121.82 Aligned_cols=113 Identities=15% Similarity=0.198 Sum_probs=84.1
Q ss_pred CCcccchhHHHHHHHHhhhccCCCeEEEEeCCCcc-ccccHHHHHHHHHHcCCCEEEEEEcCC-ccccccccc-------
Q 017890 237 SPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGT-SEGDFHAALNFAAVMEAPVVFICRNNG-WAISTNISE------- 307 (364)
Q Consensus 237 g~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~-~eG~~~EALn~Aa~~~LPvIfVV~NNg-~ais~~~~~------- 307 (364)
+.+|.++|+|+|+++| ++++.|||+.|||++ .+| .. .|.+|+++++|+++||.||+ |++..-...
T Consensus 53 t~mG~alPaAiGaklA----~Pd~~VVai~GDG~f~~mg-~~-eL~tA~r~nl~I~vIVlNN~~yGmt~gQ~sp~t~~G~ 126 (287)
T TIGR02177 53 GLHGRALPVATGIKLA----NPHLKVIVVGGDGDLYGIG-GN-HFVAAGRRNVDITVIVHDNQVYGLTKGQASPTLLKGV 126 (287)
T ss_pred cccccHHHHHHHHHHH----CCCCcEEEEeCchHHHhcc-HH-HHHHHHHhCcCeEEEEEECHHHHhhhcccccCccCCc
Confidence 5579999999999877 478999999999996 466 33 49999999999988888885 655331110
Q ss_pred cc-----------CCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEe
Q 017890 308 QF-----------RSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRL 360 (364)
Q Consensus 308 ~~-----------~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T 360 (364)
.. ...++...|.++|+.+...- .++.++.+++++|++ .++|+|||+.+
T Consensus 127 ~~~~~~~g~~~~~~np~~~a~A~g~g~va~~~~-~~~~eL~~ai~~Al~----~~GpslIeV~~ 185 (287)
T TIGR02177 127 KTKSLPYPNIQDPVNPLLLAIALGYTFVARGFS-GDVAHLKEIIKEAIN----HKGYALVDILQ 185 (287)
T ss_pred ceeecccCccCCCCCHHHHHHhCCCCeEEEEec-CCHHHHHHHHHHHHh----CCCCEEEEEeC
Confidence 00 01235567778887766522 489999999999986 58899999875
No 126
>COG3961 Pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzymes [Carbohydrate transport and metabolism / Coenzyme metabolism / General function prediction only]
Probab=99.31 E-value=1.5e-11 Score=125.93 Aligned_cols=166 Identities=20% Similarity=0.297 Sum_probs=113.6
Q ss_pred CchhHHHHHHHhhcCCCcEEEccCCchhHHHhcCCCHHHHHHHHhcCCCCCCCCCCCccccCCCcccccccCCCcccchh
Q 017890 165 IGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLP 244 (364)
Q Consensus 165 ~GqEa~~vg~a~aL~~~D~v~~~yR~~g~ll~rG~~~~~~l~~~~g~~~~~~~Gr~mp~H~~~~~~~~~~~sg~LG~~lp 244 (364)
+=||-.+--+...|+|+|+|+.- .| ..+|| +.++.. |.....-..+-+|++|+.+|
T Consensus 363 Ltq~~~w~~~~~fl~p~dviiae---tG-------------tS~FG-------~~~~~l-P~~~~~i~Q~lWGSIG~t~p 418 (557)
T COG3961 363 LTQEWLWNTVQNFLKPGDVIIAE---TG-------------TSFFG-------ALDIRL-PKGATFISQPLWGSIGYTLP 418 (557)
T ss_pred ccHHHHHHHHHhhCCCCCEEEEc---cc-------------ccccc-------ceeeec-CCCCeEEcccchhhcccccH
Confidence 44666666777889999999873 11 12343 112110 11111123556899999999
Q ss_pred HHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCC-CEEEEEEcCCcccccccccc------cCCccHHHH
Q 017890 245 QAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEA-PVVFICRNNGWAISTNISEQ------FRSDGIVVK 317 (364)
Q Consensus 245 ~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~L-PvIfVV~NNg~ais~~~~~~------~~~~~ia~~ 317 (364)
.|+|+++|. +++++|.++||||+|+ .++| +.+--+++| |+|||++|+||-|..-.+.. ...-++.+.
T Consensus 419 AalGa~~A~----~drR~IL~iGDGs~Ql-TvQE-iStmiR~gl~p~ifvlNN~GYTIEr~IHg~~~~YNdI~~Wd~~~l 492 (557)
T COG3961 419 AALGAALAA----PDRRVILFIGDGSLQL-TVQE-ISTMIRWGLKPIIFVLNNDGYTIERAIHGPTAPYNDIQSWDYTAL 492 (557)
T ss_pred hhhhhhhcC----CCccEEEEEcCchhhh-hHHH-HHHHHHcCCCcEEEEEcCCCcEEEehhcCCCcCcccccccchhhh
Confidence 999999996 5799999999999997 4666 888899999 89999999999876544331 123467778
Q ss_pred HhhcCeEEEEE--eCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeecc
Q 017890 318 GRAYGIRSIRV--DGNDALAVYTAVQAAREMAISEKRPVLVEVRLNFL 363 (364)
Q Consensus 318 a~a~G~~~~~V--DGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R~ 363 (364)
.++||..-... .-..-+++..+++.+.+ .++++.+|||++-++
T Consensus 493 ~~afg~~~~~~~~~~~~~~~l~~~~~~~~~---~~~~i~lIEv~lp~~ 537 (557)
T COG3961 493 PEAFGAKNGEAKFRATTGEELALALDVAFA---NNDRIRLIEVMLPVL 537 (557)
T ss_pred hhhcCCCCceEEEeecChHHHHHHHHHHhc---CCCceEEEEEecCcc
Confidence 88888643322 11245667777776665 367899999997653
No 127
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=99.30 E-value=2.2e-11 Score=129.12 Aligned_cols=117 Identities=15% Similarity=0.117 Sum_probs=91.0
Q ss_pred cCCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcC-Cccccccccc------
Q 017890 235 ISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNN-GWAISTNISE------ 307 (364)
Q Consensus 235 ~sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NN-g~ais~~~~~------ 307 (364)
..++||.++|.|+|+++| .++++||+++|||++.+....| |.+|..+++|+++||.|| +|++......
T Consensus 401 ~~~~mG~~~~~AiGa~~a----~p~~~Vv~i~GDG~f~~~g~~e-L~tav~~~~~i~~vVlnN~~~g~~~~q~~~~~~~~ 475 (595)
T TIGR03336 401 TTLCMGASIGVASGLSKA----GEKQRIVAFIGDSTFFHTGIPG-LINAVYNKANITVVILDNRITAMTGHQPNPGTGVT 475 (595)
T ss_pred eeeccCchHHHHhhhhhc----CCCCCEEEEeccchhhhcCHHH-HHHHHHcCCCeEEEEEcCcceeccCCCCCCCCCCC
Confidence 358999999999999877 4678999999999998643555 889999999998887777 5765432110
Q ss_pred ----ccCCccHHHHHhhcCeEEEEEeC-CCHHHHHHHHHHHHHHhhcCCCcEEEEEEe
Q 017890 308 ----QFRSDGIVVKGRAYGIRSIRVDG-NDALAVYTAVQAAREMAISEKRPVLVEVRL 360 (364)
Q Consensus 308 ----~~~~~~ia~~a~a~G~~~~~VDG-nD~~av~~a~~~A~~~ar~~~~P~LIea~T 360 (364)
.....++++.+++||++.++|+. .|++++.++++++++ .++|++|++..
T Consensus 476 ~~~~~~~~~d~~~ia~a~G~~~~~v~~~~~l~~l~~al~~a~~----~~gp~li~v~~ 529 (595)
T TIGR03336 476 GMGEATKEISIEELCRASGVEFVEVVDPLNVKETIEVFKAALA----AEGVSVIIAKQ 529 (595)
T ss_pred CCCCcCCCcCHHHHHHHcCCCEEEEeCcCCHHHHHHHHHHHHh----cCCCEEEEEcc
Confidence 11245799999999999999854 466778888888876 57899999853
No 128
>COG2609 AceE Pyruvate dehydrogenase complex, dehydrogenase (E1) component [Energy production and conversion]
Probab=99.21 E-value=1.7e-09 Score=113.89 Aligned_cols=225 Identities=18% Similarity=0.208 Sum_probs=142.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC-cccccccCCchhHH--HHHHHhhcCCC------cEEEcc-CCchhHH---Hh
Q 017890 130 EVAVKMYSHMVTLQVMDSVLYEAQRQG-RFSFYLTTIGEEAI--NIGSAAALSAD------DFILPQ-YREPGVL---LW 196 (364)
Q Consensus 130 e~l~~ly~~M~~~R~~D~~~~~~~rqG-ri~f~~~~~GqEa~--~vg~a~aL~~~------D~v~~~-yR~~g~l---l~ 196 (364)
.++.+-++..++=+..-. ....++.| .++-.+++.---|+ -|+....+++. |.||-+ |=..++. ..
T Consensus 75 ~~lErrir~~irWna~a~-vlRaskk~l~lGGH~aSfaSsatlyev~fnhffr~~~~~~ggDlV~~qgHaSPg~yArafL 153 (887)
T COG2609 75 LELERRIRSLIRWNAHAM-VLRASKKGLELGGHIASFASSATLYEVGFNHFFRAKSEKDGGDLVFFQGHASPGIYARAFL 153 (887)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHccCCCCCccchhhhhhhHHHHHHHHHHHHhcCcCCCCCCceEEEecCCCchHHHHHHH
Confidence 345555666555555522 23333333 23322222211122 24555566654 999987 3333332 22
Q ss_pred cCCCHHHHHHHHhcCCCCCCCCCCCccccCCCc-cc-ccccCCCcccchhHHHHHHHHhhhc-------cCCCeEEEEeC
Q 017890 197 RGYTLQQFANQVFANKADDGKGRQMPIHYGSKK-LN-YITISSPIATQLPQAVGVAYSLKME-------KKDACAVAYTG 267 (364)
Q Consensus 197 rG~~~~~~l~~~~g~~~~~~~Gr~mp~H~~~~~-~~-~~~~sg~LG~~lp~AvG~A~A~k~~-------~~~~~vv~~~G 267 (364)
-|...++-|+.|+.-. .|.++++.|..+. +. ..+.+.+||-+.-.|+=.|.-+|+- .++.+|+||+|
T Consensus 154 eGRlseeqLdnFRqev----~g~gl~SYPhp~lmpdfwqFpTvSmGLGp~~aiyqArf~kYL~~RGl~~~~~~~v~afLG 229 (887)
T COG2609 154 EGRLTEEQLDNFRQEV----DGKGLSSYPHPKLMPDFWQFPTVSMGLGPIQAIYQARFLKYLEARGLKDTSDQKVWAFLG 229 (887)
T ss_pred hccccHHHHHHHHHhc----cCCCCCCCCCCcCCccccccCcccccccHHHHHHHHHHHHHHHhcCCcCCCCCeEEEEec
Confidence 4655566677776533 2555655443332 23 3556789999999999888887762 46789999999
Q ss_pred CCccccccHHHHHHHHHHcCC-CEEEEEEcCCcccccccccccC-CccHHHHHhhcCeEEEEE-----------------
Q 017890 268 DGGTSEGDFHAALNFAAVMEA-PVVFICRNNGWAISTNISEQFR-SDGIVVKGRAYGIRSIRV----------------- 328 (364)
Q Consensus 268 DGa~~eG~~~EALn~Aa~~~L-PvIfVV~NNg~ais~~~~~~~~-~~~ia~~a~a~G~~~~~V----------------- 328 (364)
||++.|+...+|+.+|++++| ++||||+.|.-..+.|+...-. ...+...+++.||.++.|
T Consensus 230 DgEmDEpes~gAi~~A~re~LdNlifVincNlQrLDgpVrgngkiiqelE~~FrgAGW~VikviWg~~wd~ll~kd~~gk 309 (887)
T COG2609 230 DGEMDEPESRGAITEAAREKLDNLIFVINCNLQRLDGPVRGNGKIIQELEGIFRGAGWNVIKVIWGRRWDELLAKDTGGK 309 (887)
T ss_pred CcccCCchhhHHHHHHHHhcCCceEEEEecchhhcCCcccCCchhHHHHHHHhccCCceEEEEEecccHHHHhcccCcch
Confidence 999999999999999999999 9999999998777766532200 011222223333333322
Q ss_pred ----------------------------------------------------eCCCHHHHHHHHHHHHHHhhcCCCcEEE
Q 017890 329 ----------------------------------------------------DGNDALAVYTAVQAAREMAISEKRPVLV 356 (364)
Q Consensus 329 ----------------------------------------------------DGnD~~av~~a~~~A~~~ar~~~~P~LI 356 (364)
-|||+..|++|++.|.+. .++|++|
T Consensus 310 L~~~m~e~~dgdyqt~kakdGayvRehff~~~Pe~~aLVa~~tD~diw~L~rGGHD~~ki~aA~~~A~~~---kg~Ptvi 386 (887)
T COG2609 310 LRQLMNETVDGDYQTFKAKDGAYVREHFFGRYPETAALVADMTDDDIWALNRGGHDPEKVYAAFKKAQEH---KGRPTVI 386 (887)
T ss_pred HHHHHHhcccchhhhhcccccHHHHHHHhccChHHHHHHHhccHHHHHHHhcCCCCHHHHHHHHHHHhcC---CCCceEE
Confidence 378999999999999874 4589999
Q ss_pred EEEeec
Q 017890 357 EVRLNF 362 (364)
Q Consensus 357 ea~T~R 362 (364)
-++|++
T Consensus 387 lA~TIK 392 (887)
T COG2609 387 LAKTIK 392 (887)
T ss_pred EEeeec
Confidence 999974
No 129
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=99.20 E-value=3.9e-11 Score=139.70 Aligned_cols=116 Identities=20% Similarity=0.177 Sum_probs=91.0
Q ss_pred ccCCCccc--chhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHc--CCCEEEEEEcCC-ccccccc---
Q 017890 234 TISSPIAT--QLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVM--EAPVVFICRNNG-WAISTNI--- 305 (364)
Q Consensus 234 ~~sg~LG~--~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~--~LPvIfVV~NNg-~ais~~~--- 305 (364)
...|++|. ++|.|+|+++|. +++|||++|||++++. ..| |.+|.++ ++|+++||.||+ |++....
T Consensus 756 ~~~G~mG~~G~lpaAIGaala~-----~r~Vv~i~GDGsF~m~-~~E-L~Ta~r~~~~lpi~iVV~NN~gggi~~~l~~~ 828 (1655)
T PLN02980 756 GNRGASGIDGLLSTAIGFAVGC-----NKRVLCVVGDISFLHD-TNG-LSILSQRIARKPMTILVINNHGGAIFSLLPIA 828 (1655)
T ss_pred ecCCccchhhhHHHHHHHhhcC-----CCCEEEEEehHHHHhh-hhH-HHHhhcccCCCCEEEEEEeCCCcHhhhcCccC
Confidence 34588998 599999999873 6789999999999973 555 9999884 999977777665 5543210
Q ss_pred ---cc----c----cCCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q 017890 306 ---SE----Q----FRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNF 362 (364)
Q Consensus 306 ---~~----~----~~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R 362 (364)
.. . ....++.+.|++||+++.+|+ +++++.+++++|.+ .++|+|||+.|-|
T Consensus 829 ~~~~~~~~~~~~~~~~~~df~~lA~a~G~~~~rV~--~~~eL~~aL~~a~~----~~~p~lIEV~t~~ 890 (1655)
T PLN02980 829 KRTEPRVLNQYFYTSHDISIENLCLAHGVRHLHVG--TKSELEDALFTSQV----EQMDCVVEVESSI 890 (1655)
T ss_pred CCCcchhHHHHhcCCCCCCHHHHHHHcCCceeecC--CHHHHHHHHHHhhc----cCCCEEEEEecCh
Confidence 00 1 123689999999999999998 78999999988775 5889999999965
No 130
>KOG1185 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=99.12 E-value=5e-10 Score=113.95 Aligned_cols=117 Identities=20% Similarity=0.242 Sum_probs=91.0
Q ss_pred cCCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcC-C-cccccccccc----
Q 017890 235 ISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNN-G-WAISTNISEQ---- 308 (364)
Q Consensus 235 ~sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NN-g-~ais~~~~~~---- 308 (364)
..|+||-+++.|+++|++. +++.|+|+.||++|.. +.+| +.++.+++||||.||-|| | |+..+...++
T Consensus 428 tfgTMGVG~Gfalaaa~~~----P~~~V~~veGDsaFGf-SaME-~ET~vR~~Lpvv~vV~NN~Giyg~d~~~~~~I~e~ 501 (571)
T KOG1185|consen 428 TFGTMGVGLGFALAAALAA----PDRKVVCVEGDSAFGF-SAME-LETFVRYKLPVVIVVGNNNGIYGLDDDGWKQISEQ 501 (571)
T ss_pred cccccccchhHHHHHHhhC----CCCeEEEEecCcccCc-chhh-HHHHHHhcCCeEEEEecCCcccccCcccHHHHhhc
Confidence 4588888888777777664 9999999999999976 3566 999999999998777755 4 4433322111
Q ss_pred -----------cCCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q 017890 309 -----------FRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNF 362 (364)
Q Consensus 309 -----------~~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R 362 (364)
....++.+.+++||..++.|+ .++++..+++++.+ .+++|++|+++.-+
T Consensus 502 ~~~~~~p~~~l~~~~rY~~v~ka~G~kG~~v~--t~~el~~~l~~a~q---~~~~psvINVlI~p 561 (571)
T KOG1185|consen 502 DPTLDLPPTALLANTRYDKVAKAFGGKGYFVS--TVEELLAALQQACQ---DTDKPSVINVLIGP 561 (571)
T ss_pred CcccCCCcccccccccHHHHHHHcCCCceeeC--CHHHHHHHHHHHHh---cCCCCeEEEEEecc
Confidence 123567789999999999998 79999999998876 46799999998754
No 131
>PF09364 XFP_N: XFP N-terminal domain; InterPro: IPR018970 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria. PK activity has been sporadically reported in other microorganisms including eukaryotic yeasts. Xylulose-5-phosphate/fructose-6-phosphate phosphoketolase is a thiamine diphosphate (ThdP)-dependent enzyme found in bacteria such as Bifidobacterium sp [, ]. This enzyme has dual-specificity with the following catalytic activities: 4.1.2.9 from EC: xylose 5-P + Pi = acetyl-P + glyeraldehyde-3-P 4.1.2.22 from EC: fructose-6-P + Pi = acetyl-P + erythrose-4-P Phosphoketolases are distantly related to transketolases, e.g. IPR005475 from INTERPRO.; PDB: 3AI7_B 3AHC_A 3AHJ_A 3AHG_A 3AHE_A 3AHI_A 3AHD_A 3AHF_A 3AHH_A.
Probab=99.09 E-value=2.2e-10 Score=113.36 Aligned_cols=170 Identities=23% Similarity=0.281 Sum_probs=107.0
Q ss_pred ccccccCCchhHHHHHHHhhcCC--CcEEEccCCchhHHHh------cC----------CC---HHHHHHHHhcCCCCCC
Q 017890 158 FSFYLTTIGEEAINIGSAAALSA--DDFILPQYREPGVLLW------RG----------YT---LQQFANQVFANKADDG 216 (364)
Q Consensus 158 i~f~~~~~GqEa~~vg~a~aL~~--~D~v~~~yR~~g~ll~------rG----------~~---~~~~l~~~~g~~~~~~ 216 (364)
++.|-++.|+-.+.+.....++. .|+++..--+||.... -| .+ +..++.+| .
T Consensus 47 lGHWGt~PGlnfiyahlNrlI~~~~~~~~~v~GpGHg~pai~A~~~LeGs~se~yp~~~~d~~Gl~~L~~~F-S------ 119 (379)
T PF09364_consen 47 LGHWGTSPGLNFIYAHLNRLIRKYDLDMIYVMGPGHGGPAILANLYLEGSYSEFYPDISQDEEGLRRLFRQF-S------ 119 (379)
T ss_dssp -S-TTTHHHHHHHHHHHHHHHHHHTB-B--EESSGGGHHHHHHHHHHHSHHHHHSTTS-SSHHHHHHHHHHB-T------
T ss_pred ccccCCCccHHHHHHHHHHHHHhcCCceEEEecCCCCchhhhhhhhhcCccccccCCCCCCHHHHHHHHHhC-C------
Confidence 46778888888888877777653 4677776667764211 11 01 33444444 2
Q ss_pred CCCCCccccCCCcccccccCCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcC----C-C--
Q 017890 217 KGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVME----A-P-- 289 (364)
Q Consensus 217 ~Gr~mp~H~~~~~~~~~~~sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~----L-P-- 289 (364)
.-.++++|.....+|.+.--|-||+.+++|.|+++ +++|.+|+|++|||++.+|-. |+.|. + |
T Consensus 120 ~PgGipSH~~p~tPGsIhEGGELGYaLshA~GA~~----DnPdliv~~vvGDGEaETGpl------A~sWh~~kflnP~~ 189 (379)
T PF09364_consen 120 FPGGIPSHVSPETPGSIHEGGELGYALSHAFGAVF----DNPDLIVACVVGDGEAETGPL------AASWHSNKFLNPAT 189 (379)
T ss_dssp STTSB-SSS-TTSTT-S---SSTS-HHHHHHHHHT----T-TT-EEEEEEETTGGGSHHH------HHHGGGGGSS-TTT
T ss_pred CCCCCccccCcCCCCccCcCcchhhHHHHHhhccc----CCCCeEEEEEecCCcccCCcc------cccccccceeCccc
Confidence 22468889877667776677899999999998865 579999999999999999852 33331 1 3
Q ss_pred ---EEEEEEcCCccccccccc-ccCCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHH
Q 017890 290 ---VVFICRNNGWAISTNISE-QFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAR 344 (364)
Q Consensus 290 ---vIfVV~NNg~ais~~~~~-~~~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~ 344 (364)
|+-|+.=|||.|+.|+-- ..+.+.+.+.+++||+..+.|+|.|+.++...+..++
T Consensus 190 dGaVLPILhLNG~KI~~pTil~r~~~~eL~~lf~G~Gy~p~~Veg~dp~~~h~~ma~al 248 (379)
T PF09364_consen 190 DGAVLPILHLNGYKISNPTILARMSDEELEALFRGYGYEPIFVEGDDPADMHQAMAAAL 248 (379)
T ss_dssp S-EEEEEEEE-SBSSSSB-HHHHS-HHHHHHHHHHTTEEEEEEE---HHHHHHHHHHHH
T ss_pred CceeeceEEecCccccCCeEeeecCHHHHHHHHHhCCCeEEEEecCCHHHHHHHHHHHH
Confidence 778888899999988743 2345678899999999999999999988877664443
No 132
>COG3962 Acetolactate synthase [Amino acid transport and metabolism]
Probab=99.01 E-value=6.7e-09 Score=105.49 Aligned_cols=164 Identities=14% Similarity=0.197 Sum_probs=116.2
Q ss_pred CchhHHHHHHHhhcCCCcEEEccCCchhHHHhcCCCHHHHHHHHhcCCCCCCCCCCCccccCCCcccccccCCCcccchh
Q 017890 165 IGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLP 244 (364)
Q Consensus 165 ~GqEa~~vg~a~aL~~~D~v~~~yR~~g~ll~rG~~~~~~l~~~~g~~~~~~~Gr~mp~H~~~~~~~~~~~sg~LG~~lp 244 (364)
..|--+.-++.....++++|++. .|-.|.++-.-|.. +..+..|. ....|+||+-+.
T Consensus 395 ptq~~vigav~~~~~~~svvvcA---------AGsLPGdLhkLW~~-------~~p~~YH~-------EYgfSCMGYEia 451 (617)
T COG3962 395 PTQTQVIGAVQRTISDDSVVVCA---------AGSLPGDLHKLWRA-------GVPGTYHL-------EYGFSCMGYEIA 451 (617)
T ss_pred ccchhHHHHHHhhcCCCcEEEEe---------CCCCcHHHHHHhcc-------CCCCceee-------eecccccccccc
Confidence 33433433455556677777765 44445554433432 33344442 234589999999
Q ss_pred HHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEE-cCCccccccc-----------------c
Q 017890 245 QAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICR-NNGWAISTNI-----------------S 306 (364)
Q Consensus 245 ~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~-NNg~ais~~~-----------------~ 306 (364)
-++|+ |+..+++-|++++|||++.| .+..|.++..++..+++++. |-||+-.... .
T Consensus 452 G~lG~----K~a~pdreV~vmVGDGSymM--lnSEL~Tsv~~g~Ki~Vvl~DN~GyGCIn~LQm~~Gg~sf~~~~r~~~~ 525 (617)
T COG3962 452 GGLGA----KAAEPDREVYVMVGDGSYMM--LNSELATSVMLGKKIIVVLLDNRGYGCINRLQMATGGASFNNLLRDTDH 525 (617)
T ss_pred ccccc----ccCCCCCeEEEEEcccchhh--hhHHHHHHHHcCCeEEEEEECCCCcchhhhhhhhcCcchhhhhhhhhcc
Confidence 88887 45678999999999999986 67789999999998865554 5578532111 1
Q ss_pred -cccCCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeecc
Q 017890 307 -EQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNFL 363 (364)
Q Consensus 307 -~~~~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R~ 363 (364)
+.....|++..|++||+.+++|. +++++.+|+++|++ ..+++||++.|.++
T Consensus 526 e~~~~~vDfA~~A~s~Ga~~~kv~--~i~eL~aAL~~Ak~----~~~ttvi~I~t~P~ 577 (617)
T COG3962 526 EEEILQVDFAAHAESYGAKAYKVG--TIEELEAALADAKA----SDRTTVIVIDTDPK 577 (617)
T ss_pred cCCCCcccHHHHHhhcCceeEecC--CHHHHHHHHHHHHh----CCCCEEEEEecCCc
Confidence 23455789999999999999997 89999888887765 78999999998764
No 133
>PRK11865 pyruvate ferredoxin oxidoreductase subunit beta; Provisional
Probab=98.96 E-value=1.4e-08 Score=99.34 Aligned_cols=125 Identities=21% Similarity=0.232 Sum_probs=99.0
Q ss_pred ccccccCCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCcc-ccccHHHHHHHHHHcCCCEEEEEEcCC-ccccc----
Q 017890 230 LNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGT-SEGDFHAALNFAAVMEAPVVFICRNNG-WAIST---- 303 (364)
Q Consensus 230 ~~~~~~sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~-~eG~~~EALn~Aa~~~LPvIfVV~NNg-~ais~---- 303 (364)
.++....+.+|.+.++|.|++.|.+..+++..||++.|||++ ..| + ++|.-|...+.++++||.||. |+..+
T Consensus 62 ~~~~~~~~~fg~~~a~a~Gi~~a~~~~~~~~~Vv~~~GDG~~~dIG-~-~~L~~a~~r~~ni~~ivlDNe~Y~nTGgQ~S 139 (299)
T PRK11865 62 WNVPWIHVAFENAAAVASGIERAVKALGKKVNVVAIGGDGGTADIG-F-QSLSGAMERGHNILYLMYDNEAYMNTGIQRS 139 (299)
T ss_pred cccccchhhhcchHHHHHHHHHHHHHhcCCCeEEEEeCCchHhhcc-H-HHHHHHHHcCCCeEEEEECCccccCCCCCCC
Confidence 345566789999999999999998876777899999999998 454 4 779999999999999999997 44321
Q ss_pred ---cc---------cc-----ccCCccHHHHHhhcCeEEE-EEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEe
Q 017890 304 ---NI---------SE-----QFRSDGIVVKGRAYGIRSI-RVDGNDALAVYTAVQAAREMAISEKRPVLVEVRL 360 (364)
Q Consensus 304 ---~~---------~~-----~~~~~~ia~~a~a~G~~~~-~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T 360 (364)
|. .. .....|+...+.++|+..+ +++-.|+.++.+++++|.+ .++|.+|++.+
T Consensus 140 ~~Tp~Ga~t~tsp~Gk~~~G~~~~kkd~~~Ia~a~g~~YVA~~~~~~~~~l~~~i~~A~~----~~Gps~I~v~s 210 (299)
T PRK11865 140 GSTPFGASTTTSPAGKYSRGEDRPKKNMPLIMAAHGIPYVATASIGYPEDFMEKVKKAKE----VEGPAYIQVLQ 210 (299)
T ss_pred CCCCCCcccccCCCCcccCCCCCCCCCHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHh----CCCCEEEEEEC
Confidence 11 00 2224578889999999777 6677799999999999987 58999999864
No 134
>KOG4166 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=98.89 E-value=4.6e-09 Score=105.73 Aligned_cols=113 Identities=22% Similarity=0.294 Sum_probs=91.2
Q ss_pred CCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCc-ccccccc---------
Q 017890 237 SPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGW-AISTNIS--------- 306 (364)
Q Consensus 237 g~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~-ais~~~~--------- 306 (364)
|.||.+||+|+|+..| +++..||-+-||++|.+. ..| |.++.+.++||-+++.||.- ++.+..+
T Consensus 524 GtMGfGLPAAIGAsVA----~P~~iViDIDGDaSF~Mt-~~E-Lat~rq~~~PVKiLiLNNeeqGMVtQWq~lFYe~rys 597 (675)
T KOG4166|consen 524 GTMGFGLPAAIGASVA----NPDAIVIDIDGDASFIMT-VQE-LATIRQENLPVKILILNNEEQGMVTQWQDLFYEARYS 597 (675)
T ss_pred cccccCcchhhccccc----CcccEEEeccCCceeeee-hHh-hhhhhhcCCceEEEEecchhhhhHHHHHHHHHHhhhc
Confidence 7899999999999776 589999999999999874 566 99999999999888888864 3333211
Q ss_pred -cccCCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEee
Q 017890 307 -EQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLN 361 (364)
Q Consensus 307 -~~~~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~ 361 (364)
.....+++.+.|.++|++..||. .-+++.+.+++.+. .++|+|+|+.+-
T Consensus 598 HThQ~nPnf~klA~AmGikalRV~--K~edL~~k~kefls----TkGPvLleV~v~ 647 (675)
T KOG4166|consen 598 HTHQENPNFLKLAAAMGIKALRVT--KKEDLREKIKEFLS----TKGPVLLEVIVP 647 (675)
T ss_pred cccccCccHHHHHHhcCCchheee--hHHHHHHHHHHHhC----CCCCeEEEEEcc
Confidence 11124789999999999999997 46788888888775 789999999864
No 135
>COG3960 Glyoxylate carboligase [General function prediction only]
Probab=98.82 E-value=7.9e-09 Score=101.61 Aligned_cols=154 Identities=21% Similarity=0.256 Sum_probs=110.9
Q ss_pred HHHHHHHHhcCCCCC--C------CCCCCccccCCCcccc-cccCCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCcc
Q 017890 201 LQQFANQVFANKADD--G------KGRQMPIHYGSKKLNY-ITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGT 271 (364)
Q Consensus 201 ~~~~l~~~~g~~~~~--~------~Gr~mp~H~~~~~~~~-~~~sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~ 271 (364)
..+.|++.||+..-+ + .|.|+ .|...+.+-+ -+..||||+.+|.|+|+-. ..+++.+|++.||-.+
T Consensus 375 vyeemn~~fgrd~~yvstiglsqia~aqf-lhv~~pr~wincgqagplgwtipaalgv~~----adp~r~vvalsgdydf 449 (592)
T COG3960 375 VYEEMNKAFGRDVCYVTTIGLSQIAAAQF-LHVFKPRHWINCGQAGPLGWTIPAALGVCA----ADPKRNVVAISGDYDF 449 (592)
T ss_pred HHHHHHhhcCCceeEEEeccHHHHhhhhh-hhhcCCcceeecCccCCcccccchhhceee----cCCCCceEEeecCchH
Confidence 345677777765422 1 22332 2333222222 2346999999999999854 4688999999999999
Q ss_pred ccccHHHHHHHHHHcCCCEEEEEEcCCcc-cccccc--------ccc------------CCccHHHHHhhcCeEEEEEeC
Q 017890 272 SEGDFHAALNFAAVMEAPVVFICRNNGWA-ISTNIS--------EQF------------RSDGIVVKGRAYGIRSIRVDG 330 (364)
Q Consensus 272 ~eG~~~EALn~Aa~~~LPvIfVV~NNg~a-is~~~~--------~~~------------~~~~ia~~a~a~G~~~~~VDG 330 (364)
+. ..|.|...+++++|.|.|+.||.|- .....+ -+. -+.|-.+.+++.|++.+||-
T Consensus 450 qf--mieelavgaq~k~pyihv~vnnaylglirqaqr~f~mdy~v~laf~nin~~~~~gygvdhv~v~eglgckairv~- 526 (592)
T COG3960 450 QF--LIEELAVGAQFKIPYIHVLVNNAYLGLIRQAQRAFDMDYCVQLAFENINSSEVNGYGVDHVKVAEGLGCKAIRVF- 526 (592)
T ss_pred HH--HHHHHhhhhcccCceEEEEecchHHHHHHHHHhcCCccceeeehhhccCCccccccCccceeehhccCceeEEec-
Confidence 85 5688999999999999999999982 111100 011 12345567899999999996
Q ss_pred CCHHHHHHHHHHHHHHhhcCCCcEEEEEEeecc
Q 017890 331 NDALAVYTAVQAAREMAISEKRPVLVEVRLNFL 363 (364)
Q Consensus 331 nD~~av~~a~~~A~~~ar~~~~P~LIea~T~R~ 363 (364)
+++++..|+.+|.....+..-|++||+..-|.
T Consensus 527 -~p~e~a~af~~a~~lm~eh~vpvvve~ilerv 558 (592)
T COG3960 527 -KPEDIAPAFEQAKALMAQHRVPVVVEVILERV 558 (592)
T ss_pred -ChHHhhHHHHHHHHHHHhcCCCeeeehHHHHh
Confidence 78999999999998888888999999876653
No 136
>KOG1184 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=98.72 E-value=4.4e-08 Score=100.56 Aligned_cols=121 Identities=17% Similarity=0.247 Sum_probs=90.7
Q ss_pred ccccCCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCC-CEEEEEEcCCcccccccccc--
Q 017890 232 YITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEA-PVVFICRNNGWAISTNISEQ-- 308 (364)
Q Consensus 232 ~~~~sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~L-PvIfVV~NNg~ais~~~~~~-- 308 (364)
+...+|++|+.+|.++|++.|. ++++||.++|||++++ .++| +.++.+|++ |.||+++|+||-|....+..
T Consensus 410 ~q~~wgsIG~svga~lG~a~a~----~e~rvilfiGDGs~ql-TvQe-iStmir~gl~~~if~~NN~GYTIE~~IH~~~Y 483 (561)
T KOG1184|consen 410 SQMQWGSIGWSVGATLGYAQAA----PEKRVILFIGDGSFQL-TVQE-ISTMIRWGLKPIIFLINNGGYTIEVEIHDGPY 483 (561)
T ss_pred EEEEEeeccccchhhhhhhhcc----CCceEEEEecCcccee-eHHH-HHHHHhcCCCcEEEEEeCCceEEEEeecCCCc
Confidence 3455799999999999999986 5689999999999998 4677 888999999 66888899999886554431
Q ss_pred --cCCccHHHHHhhcCeE-----EEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q 017890 309 --FRSDGIVVKGRAYGIR-----SIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNF 362 (364)
Q Consensus 309 --~~~~~ia~~a~a~G~~-----~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R 362 (364)
...-++.++.++||.. ..+|- .-.+..++.+.+.. .+++++.||||+...
T Consensus 484 n~I~~Wd~~~l~~afg~~~gk~~~~~v~--~~~e~~~~~~~~~~--~~~~~i~liEv~l~~ 540 (561)
T KOG1184|consen 484 NDIQNWDYTALLEAFGAGEGKYETHKVR--TEEELVEAIKDATF--EKNDKIRLIEVILPV 540 (561)
T ss_pred cccccchHHHHHHhhcCccceeEEeeec--cchHHHHHHhhhhh--cccCceEEEEEecCc
Confidence 1234677888888753 33332 33567777777763 256789999998653
No 137
>COG3957 Phosphoketolase [Carbohydrate transport and metabolism]
Probab=98.29 E-value=3.4e-06 Score=89.61 Aligned_cols=171 Identities=17% Similarity=0.182 Sum_probs=113.9
Q ss_pred ccccccCCchhHHHHHHHhhcCCC--cEEEccCCchhHHHh------cCC-------------CHHHHHHHHhcCCCCCC
Q 017890 158 FSFYLTTIGEEAINIGSAAALSAD--DFILPQYREPGVLLW------RGY-------------TLQQFANQVFANKADDG 216 (364)
Q Consensus 158 i~f~~~~~GqEa~~vg~a~aL~~~--D~v~~~yR~~g~ll~------rG~-------------~~~~~l~~~~g~~~~~~ 216 (364)
++.+-++.|.--+.+......+.- ++++..-.+|+...- -|. -+.+++.+|.
T Consensus 60 lGHwGt~pg~s~~Y~H~nr~i~~~d~~~~yv~GpGHg~~~~~~~~yLeGtys~~yp~~s~d~~Gm~rL~~qFs------- 132 (793)
T COG3957 60 LGHWGTQPGLSFIYAHLNRLISKYDANMAYVMGPGHGGPAIVANTYLEGTYSEMYPDISQDEEGLNRLFKQFS------- 132 (793)
T ss_pred cccccCCCCchhhhhhhhHHHHhhCcceEEEecCCCCcceeeeccccCCccccccccccccHHHHHHHHHhcc-------
Confidence 456777778777776666655543 444444444442111 121 1345555553
Q ss_pred CCCCCccccCCCcccccccCCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHH-c---CC-CEE
Q 017890 217 KGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAV-M---EA-PVV 291 (364)
Q Consensus 217 ~Gr~mp~H~~~~~~~~~~~sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~-~---~L-PvI 291 (364)
.-.++++|.....+|.+.-.|.||+++.+|.|+|+ .+++.++.|++|||+..+|.... -..+.. + +. .|+
T Consensus 133 ~PgGi~SH~~petPGsIhEGGeLGy~l~ha~gAa~----d~Pdli~~~vvGDGeaetgplat-sWhs~kf~np~~dGavL 207 (793)
T COG3957 133 FPGGIGSHVAPETPGSIHEGGELGYALSHAYGAAF----DNPDLIVACVVGDGEAETGPLAT-SWHSNKFLNPARDGAVL 207 (793)
T ss_pred CCCCcccccCCCCCCccCcCcchhHHHHHHHHhhc----CCCCcEEEEEecccccccCcccc-ccccccccCccccCcee
Confidence 23348888877667877778999999999988875 57999999999999887774211 111111 1 11 478
Q ss_pred EEEEcCCcccccccccc-cCCccHHHHHhhcCeEEEEEeCCCHHHHHHHH
Q 017890 292 FICRNNGWAISTNISEQ-FRSDGIVVKGRAYGIRSIRVDGNDALAVYTAV 340 (364)
Q Consensus 292 fVV~NNg~ais~~~~~~-~~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~ 340 (364)
-|..=|||.|+-|+.-. .+.+.+.+.+++||++-+-|+|.|+.++.+.+
T Consensus 208 PIL~lNGykI~npT~lar~s~~el~~~f~G~Gy~p~~veg~d~~d~hq~m 257 (793)
T COG3957 208 PILHLNGYKIENPTVLARISDEELKALFEGYGYEPVFVEGADPADMHQLM 257 (793)
T ss_pred eEEEecceeccCceeeeecChHHHHHHHhhCCCceeEecCCChHHhhhhH
Confidence 88888999999886533 34556889999999999999998888744433
No 138
>COG1013 PorB Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit [Energy production and conversion]
Probab=98.12 E-value=3.6e-05 Score=75.47 Aligned_cols=115 Identities=18% Similarity=0.208 Sum_probs=85.6
Q ss_pred CCCcccchhHHHHHHHHhhhccCCCeEEEEeCCC-ccccccHHHHHHHHHHcCCCEEEEEEcCC-cccc-------cccc
Q 017890 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDG-GTSEGDFHAALNFAAVMEAPVVFICRNNG-WAIS-------TNIS 306 (364)
Q Consensus 236 sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDG-a~~eG~~~EALn~Aa~~~LPvIfVV~NNg-~ais-------~~~~ 306 (364)
.+.-|-++++|.|+.+|. ++..||++.||| ++..|- ..|--|...+..|++||-||. |+.+ ||..
T Consensus 69 hs~~gra~a~atGik~A~----~~l~Viv~gGDG~~~dIG~--~~l~h~~~Rn~dit~iv~DNevYgnTggQ~S~tTp~G 142 (294)
T COG1013 69 HSLHGRAAAVATGIKLAN----PALSVIVIGGDGDAYDIGG--NHLIHALRRNHDITYIVVDNEVYGNTGGQASPTTPKG 142 (294)
T ss_pred eeccCcchhhHHHHHHhc----cCCeEEEEecchhHhhhhh--HHHHHHHHcCCCeEEEEECCeecccCCCccCCCCCCC
Confidence 356788889999998876 556899999999 557774 337778889999998888886 5432 2221
Q ss_pred cc---------c-CCccHHHHHhhcCeEEE-EEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEe
Q 017890 307 EQ---------F-RSDGIVVKGRAYGIRSI-RVDGNDALAVYTAVQAAREMAISEKRPVLVEVRL 360 (364)
Q Consensus 307 ~~---------~-~~~~ia~~a~a~G~~~~-~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T 360 (364)
.+ . ..-++...+.++|...+ ++---++..+.+.+++|+++ +||.+|++.+
T Consensus 143 ~~t~t~p~Gk~~~~k~d~~~la~a~G~~yVAr~~~~~~~~l~~~i~kA~~~----~Gps~I~v~s 203 (294)
T COG1013 143 AKTKTTPYGKRSEKKKDPGLLAMAAGATYVARASVGDPKDLTEKIKKAAEH----KGPSFIDVLS 203 (294)
T ss_pred ceeeecCCCCCcCCCCCHHHHHHHCCCCeEEEecccCHHHHHHHHHHHHhc----cCCeEEEEec
Confidence 11 1 22378888999998666 66545799999999999884 6999999864
No 139
>COG1165 MenD 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase [Coenzyme metabolism]
Probab=97.84 E-value=0.00074 Score=70.77 Aligned_cols=107 Identities=21% Similarity=0.265 Sum_probs=75.7
Q ss_pred hhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCE-EEEEEcCCccccc--ccc-------ccc---
Q 017890 243 LPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPV-VFICRNNGWAIST--NIS-------EQF--- 309 (364)
Q Consensus 243 lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPv-IfVV~NNg~ais~--~~~-------~~~--- 309 (364)
++-|+|++.|. .+++|.++||=++-- |. -+|........|+ |+|++|||=+|-. |+. +.+
T Consensus 428 vSTA~Gi~~a~-----~~ptv~liGDLS~lh-D~-NgLl~~k~~~~~ltIvv~NNnGGgIF~~Lp~~~~~~~fe~~F~tP 500 (566)
T COG1165 428 VSTALGIARAT-----QKPTVALIGDLSFLH-DL-NGLLLLKKVPQPLTIVVVNNNGGGIFSLLPQAQSEPVFERLFGTP 500 (566)
T ss_pred HHHHhhhhhhc-----CCceEEEEechhhhh-cc-chHhhcCCCCCCeEEEEEeCCCceeeeeccCCCCcchHHHhcCCC
Confidence 56688888764 356999999999843 21 1244555556676 7777888877632 211 111
Q ss_pred CCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q 017890 310 RSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNF 362 (364)
Q Consensus 310 ~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R 362 (364)
.+-|++..++.||+...+++ .+.++.+++..+.. ..+-.|||++|.|
T Consensus 501 h~ldF~~la~~y~l~y~~~~--s~~~l~~~~~~~~~----~~g~~viEvkt~r 547 (566)
T COG1165 501 HGLDFAHLAATYGLEYHRPQ--SWDELGEALDQAWR----RSGTTVIEVKTDR 547 (566)
T ss_pred CCCCHHHHHHHhCccccccC--cHHHHHHHHhhhcc----CCCcEEEEEecCh
Confidence 24589999999999999987 57788888877764 3568999999987
No 140
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]
Probab=97.74 E-value=0.00012 Score=77.51 Aligned_cols=116 Identities=21% Similarity=0.223 Sum_probs=85.8
Q ss_pred cccCCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCcc-ccccHHHHHHHHHHcCCCEEEEEEcCCc-cccccccc---
Q 017890 233 ITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGT-SEGDFHAALNFAAVMEAPVVFICRNNGW-AISTNISE--- 307 (364)
Q Consensus 233 ~~~sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~-~eG~~~EALn~Aa~~~LPvIfVV~NNg~-ais~~~~~--- 307 (364)
...+-.+|.+++.|-|++++. .+++|+++|||.| ..|. .+|.-|...+.+++++|.+|.+ ++++.+..
T Consensus 424 ~d~t~~mGssig~a~g~~~~~-----~k~~va~iGDsTF~HsGi--~~l~nAV~n~~~~~~vvLdN~~tAMTGgQp~pg~ 496 (640)
T COG4231 424 VDTTTMMGSSIGIAGGLSFAS-----TKKIVAVIGDSTFFHSGI--LALINAVYNKANILVVVLDNRTTAMTGGQPHPGT 496 (640)
T ss_pred hhhhhhccchhhhcccccccc-----CCceEEEeccccccccCc--HHHHHHHhcCCCeEEEEEeccchhccCCCCCCCc
Confidence 334556788788888887764 3789999999998 4443 4588888889999999888887 44332211
Q ss_pred c-------cCCccHHHHHhhcCeEEEE-EeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEE
Q 017890 308 Q-------FRSDGIVVKGRAYGIRSIR-VDGNDALAVYTAVQAAREMAISEKRPVLVEVR 359 (364)
Q Consensus 308 ~-------~~~~~ia~~a~a~G~~~~~-VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~ 359 (364)
+ .....+.+..++.|+..++ ||=.|+.++.+++++|++ ..+|.+|.++
T Consensus 497 ~~~~~g~~~~~i~iee~~r~~Gv~~v~~vdp~~~~~~~~~~keale----~~gpsViiak 552 (640)
T COG4231 497 GVAAEGTKSTAIVIEEVVRAMGVEDVETVDPYDVKELSEAIKEALE----VPGPSVIIAK 552 (640)
T ss_pred ccccCCCccceeEhhHhhhhcCceeeeccCCcchHHHHHHHHHHhc----CCCceEEEEc
Confidence 1 1234677888999998886 566899999999999987 4779988653
No 141
>cd03377 TPP_PFOR_PNO Thiamine pyrophosphate (TPP family), PFOR_PNO subfamily, TPP-binding module; composed of proteins similar to the single subunit pyruvate ferredoxin oxidoreductase (PFOR) of Desulfovibrio Africanus, present in bacteria and amitochondriate eukaryotes. This subfamily also includes proteins characterized as pyruvate NADP+ oxidoreductase (PNO). These enzymes are dependent on TPP and a divalent metal cation as cofactors. PFOR and PNO catalyze the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The PFOR from cyanobacterium Anabaena (NifJ) is required for the transfer of electrons from pyruvate to flavodoxin, which reduces nitrogenase. The facultative anaerobic mitochondrion of the photosynthetic protist Euglena gra
Probab=97.29 E-value=0.0023 Score=64.52 Aligned_cols=96 Identities=15% Similarity=0.202 Sum_probs=69.3
Q ss_pred CCeEEEEeCCCcc-ccccHHHHHHHHHHcCCCEEEEEEcCC-cccc-------cccc---------cccCCccHHHHHhh
Q 017890 259 DACAVAYTGDGGT-SEGDFHAALNFAAVMEAPVVFICRNNG-WAIS-------TNIS---------EQFRSDGIVVKGRA 320 (364)
Q Consensus 259 ~~~vv~~~GDGa~-~eG~~~EALn~Aa~~~LPvIfVV~NNg-~ais-------~~~~---------~~~~~~~ia~~a~a 320 (364)
+..||++.|||.. ..|. ..|.-|...+.+|++||-||. |+.+ ||.. .....-++...+.+
T Consensus 151 ~~~v~v~gGDG~~ydIG~--~~l~ha~~r~~ni~~iv~DNe~Y~nTGgQ~S~tTp~Ga~t~tsp~Gk~~~kkd~~~ia~a 228 (365)
T cd03377 151 KKSVWIIGGDGWAYDIGY--GGLDHVLASGENVNILVLDTEVYSNTGGQASKATPLGAVAKFAAAGKRTGKKDLGMIAMS 228 (365)
T ss_pred ccceEEEecchhhhccch--hhHHHHHHcCCCeEEEEECCcccccCCCcCCCCCCCcCcCccCCCCCCCCCcCHHHHHHH
Confidence 3579999999955 6763 336667777889988887775 6542 2211 11223578888999
Q ss_pred cCeEEE-EEe-CCCHHHHHHHHHHHHHHhhcCCCcEEEEEEe
Q 017890 321 YGIRSI-RVD-GNDALAVYTAVQAAREMAISEKRPVLVEVRL 360 (364)
Q Consensus 321 ~G~~~~-~VD-GnD~~av~~a~~~A~~~ar~~~~P~LIea~T 360 (364)
+|...+ ++- |-++.++.+++++|.+ .+||.+|++.+
T Consensus 229 ~g~~YVA~~s~~~~~~~~~~~i~eA~~----~~Gps~I~v~s 266 (365)
T cd03377 229 YGNVYVAQIALGANDNQTLKAFREAEA----YDGPSLIIAYS 266 (365)
T ss_pred cCCCEEEEEecccCHHHHHHHHHHHhc----CCCCEEEEEEc
Confidence 998766 553 4589999999999987 48999999875
No 142
>cd06586 TPP_enzyme_PYR Pyrimidine (PYR) binding domain of thiamine pyrophosphate (TPP)-dependent enzymes. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this group. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. In the case of 2-oxoisovalerate dehydrogenase (2OXO), sulfopyruvate deca
Probab=96.92 E-value=0.019 Score=49.51 Aligned_cols=104 Identities=23% Similarity=0.195 Sum_probs=65.7
Q ss_pred hhHHHHHHHHhhhccCCCeEEEEe-CCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhc
Q 017890 243 LPQAVGVAYSLKMEKKDACAVAYT-GDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAY 321 (364)
Q Consensus 243 lp~AvG~A~A~k~~~~~~~vv~~~-GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~ 321 (364)
..+|.|.+.+ +. ..+++.. |.|..+ ..+++..|...++|+|+|+-..+..... .......+....++.+
T Consensus 48 ~~~A~G~a~~----~~-~~v~~~~~gpg~~~---~~~~l~~a~~~~~Pvl~i~~~~~~~~~~--~~~~q~~~~~~~~~~~ 117 (154)
T cd06586 48 AGAAAGYARA----GG-PPVVIVTSGTGLLN---AINGLADAAAEHLPVVFLIGARGISAQA--KQTFQSMFDLGMYRSI 117 (154)
T ss_pred HHHHHHHHHh----hC-CEEEEEcCCCcHHH---HHHHHHHHHhcCCCEEEEeCCCChhhhc--cCcccccCHHHHHHHh
Confidence 4456666654 23 3333333 888764 5577888888899999999766643211 1111223344556666
Q ss_pred CeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEE
Q 017890 322 GIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEV 358 (364)
Q Consensus 322 G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea 358 (364)
..-.+.+. +..++.+.+.+|...+....+|++|++
T Consensus 118 ~~~~~~~~--~~~~~~~~~~~a~~~a~~~~gPv~l~i 152 (154)
T cd06586 118 PEANISSP--SPAELPAGIDHAIRTAYASQGPVVVRL 152 (154)
T ss_pred hheEEEeC--CHHHHHHHHHHHHHHHhcCCCCEEEEc
Confidence 65555554 567777777888777777788999975
No 143
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=96.80 E-value=0.022 Score=49.57 Aligned_cols=106 Identities=22% Similarity=0.167 Sum_probs=67.1
Q ss_pred hhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhcC
Q 017890 243 LPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYG 322 (364)
Q Consensus 243 lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G 322 (364)
..+|.|.+++. ++-.++++..|=|..+ ..+++..|...++|+|+|+-+....-..... ....+..+..+.+-
T Consensus 47 ~~~A~g~~~~~---~~~~v~~~~~gpG~~n---~~~~l~~A~~~~~Pll~i~~~~~~~~~~~~~--~q~~d~~~~~~~~~ 118 (155)
T cd07035 47 VGMADGYARAT---GKPGVVLVTSGPGLTN---AVTGLANAYLDSIPLLVITGQRPTAGEGRGA--FQEIDQVALFRPIT 118 (155)
T ss_pred HHHHHHHHHHH---CCCEEEEEcCCCcHHH---HHHHHHHHHhhCCCEEEEeCCCccccccCCc--ccccCHHHHHHHHh
Confidence 34555665542 1222333333555554 5678888999999999998765532221111 11234445555554
Q ss_pred eEEEEEeCCCHHHHHHHHHHHHHHhhcC-CCcEEEEE
Q 017890 323 IRSIRVDGNDALAVYTAVQAAREMAISE-KRPVLVEV 358 (364)
Q Consensus 323 ~~~~~VDGnD~~av~~a~~~A~~~ar~~-~~P~LIea 358 (364)
-...+++ +++++.+.+.+|.+.+... .+|+.|++
T Consensus 119 ~~~~~i~--~~~~~~~~i~~A~~~a~~~~~gPv~l~i 153 (155)
T cd07035 119 KWAYRVT--SPEEIPEALRRAFRIALSGRPGPVALDL 153 (155)
T ss_pred ceEEEcC--CHHHHHHHHHHHHHHhcCCCCCcEEEEe
Confidence 4567775 7889999999999988877 68999986
No 144
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=96.66 E-value=0.035 Score=49.64 Aligned_cols=105 Identities=15% Similarity=0.092 Sum_probs=72.4
Q ss_pred HHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhcCeE
Q 017890 245 QAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIR 324 (364)
Q Consensus 245 ~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~ 324 (364)
+|-|.|.+ .++-.++++..|=|.++ ..-++.-|...++|+|+|.-+....... .......|..+.++.+--.
T Consensus 53 mA~gyar~---tg~~~v~~~t~GpG~~n---~~~~l~~A~~~~~Pvl~I~g~~~~~~~~--~~~~q~~d~~~~~~~~tk~ 124 (164)
T cd07039 53 AASAEAKL---TGKLGVCLGSSGPGAIH---LLNGLYDAKRDRAPVLAIAGQVPTDELG--TDYFQEVDLLALFKDVAVY 124 (164)
T ss_pred HHHHHHHH---hCCCEEEEECCCCcHHH---HHHHHHHHHhcCCCEEEEecCCcccccC--CCCCcccCHHHHHHHhhcE
Confidence 45555544 34445666666877776 4466888888999999999765532211 1112223566777777777
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEE
Q 017890 325 SIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVR 359 (364)
Q Consensus 325 ~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~ 359 (364)
..+|+ +++++.+++++|++.+....+|+.|++-
T Consensus 125 ~~~v~--~~~~~~~~i~~A~~~a~~~~GPV~l~iP 157 (164)
T cd07039 125 NETVT--SPEQLPELLDRAIRTAIAKRGVAVLILP 157 (164)
T ss_pred EEEeC--CHHHHHHHHHHHHHHHhcCCCCEEEEeC
Confidence 77887 7888999999998888877899999863
No 145
>PRK13030 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=96.39 E-value=0.018 Score=65.91 Aligned_cols=115 Identities=17% Similarity=0.093 Sum_probs=76.4
Q ss_pred cCCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCcc-ccccHHHHHHHHHHcCCCEEEEEEcCCc-ccccccc--cccC
Q 017890 235 ISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGT-SEGDFHAALNFAAVMEAPVVFICRNNGW-AISTNIS--EQFR 310 (364)
Q Consensus 235 ~sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~-~eG~~~EALn~Aa~~~LPvIfVV~NNg~-ais~~~~--~~~~ 310 (364)
....||.....++|.+.+. .++.||+.+|||.+ ..|. -+|.-|...+.|++++|.+|.. ++++... ...+
T Consensus 466 ~~~~MG~~g~~~~G~a~~~----~~~~v~a~iGDgTf~HSG~--~al~~AV~~~~nit~~IL~N~~tAMTGgQp~~g~i~ 539 (1159)
T PRK13030 466 GLTQMGGEGVDWIGHAPFT----ETKHVFQNLGDGTYFHSGS--LAIRQAVAAGANITYKILYNDAVAMTGGQPVDGSIS 539 (1159)
T ss_pred eeeccCccchhhceecccc----CCCCEEEEeccchhhhcCH--HHHHHHHhcCCCeEEEEEeCCcccccCCCCCCCCCC
Confidence 3468898899999988763 34579999999998 4553 2677777888999998888886 5544322 2222
Q ss_pred CccHHHHHhhcCeEEEEEeCCCHHH----------------HHHHHHHHHHHhhcCCCcEEEEE
Q 017890 311 SDGIVVKGRAYGIRSIRVDGNDALA----------------VYTAVQAAREMAISEKRPVLVEV 358 (364)
Q Consensus 311 ~~~ia~~a~a~G~~~~~VDGnD~~a----------------v~~a~~~A~~~ar~~~~P~LIea 358 (364)
.+.|+...++.|++-+.|-..|+.. ..+++++++ |+.+++++|..
T Consensus 540 v~~i~~~~~a~Gv~~v~vvsddp~~~~~~~~~~~~~v~~r~~l~~vq~~l---~~~~GvsViI~ 600 (1159)
T PRK13030 540 VPQIARQVEAEGVSRIVVVSDEPEKYRGHHLPAGVTVHHRDELDAVQREL---RETPGVTVLIY 600 (1159)
T ss_pred HHHHHHHHHhCCCcEEEEecCChhhccccccCCCcccccHHHHHHHHHHH---hcCCCcEEEEE
Confidence 3334447889999888764334433 334444444 24578888764
No 146
>PRK09193 indolepyruvate ferredoxin oxidoreductase; Validated
Probab=96.34 E-value=0.021 Score=65.33 Aligned_cols=115 Identities=16% Similarity=0.083 Sum_probs=79.4
Q ss_pred cCCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCcc-ccccHHHHHHHHHHcCCCEEEEEEcCCc-ccccccc--cccC
Q 017890 235 ISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGT-SEGDFHAALNFAAVMEAPVVFICRNNGW-AISTNIS--EQFR 310 (364)
Q Consensus 235 ~sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~-~eG~~~EALn~Aa~~~LPvIfVV~NNg~-ais~~~~--~~~~ 310 (364)
....||.....++|.+.+ ..++.||+.+|||.+ ..|. -+|.-|...+.+++++|.+|.. ++++... ...+
T Consensus 479 ~~~~MG~eg~~~~G~a~f----~~~~hv~a~iGDgTffHSG~--~al~~AV~~~~nit~~IL~N~~vAMTGgQ~~~g~~~ 552 (1165)
T PRK09193 479 TFTQMGGEGVPWIGQAPF----TDEKHVFQNLGDGTYFHSGL--LAIRAAVAAGVNITYKILYNDAVAMTGGQPVDGGLS 552 (1165)
T ss_pred eeeccCCcchhhceeccc----cCCCcEEEEeccccchhcCH--HHHHHHHhcCCCeEEEEEeCCcccccCCCCCCCCcc
Confidence 346889888999998765 234679999999998 4442 3577777888999888887775 5554322 2235
Q ss_pred CccHHHHHhhcCeEEEEEeCCCHHHH-----------------HHHHHHHHHHhhcCCCcEEEEE
Q 017890 311 SDGIVVKGRAYGIRSIRVDGNDALAV-----------------YTAVQAAREMAISEKRPVLVEV 358 (364)
Q Consensus 311 ~~~ia~~a~a~G~~~~~VDGnD~~av-----------------~~a~~~A~~~ar~~~~P~LIea 358 (364)
..+|....++.|++-+.|-..|+... .+++++++ |+..++++|..
T Consensus 553 ~~~i~~~~~a~GV~~v~vv~ddp~~~~~~~~~~~~v~~~~R~~l~~vq~~l---r~~~GvsViI~ 614 (1165)
T PRK09193 553 VPQITRQLAAEGVKRIVVVTDEPEKYDGVARLAPGVTVHHRDELDAVQREL---REIPGVTVLIY 614 (1165)
T ss_pred hhhHHHHHHhCCCCEEEEeCCChhhhhhccccCcCcccccHHHHHHHHHHH---hcCCCcEEEEE
Confidence 57788999999998876643445444 34444444 24678887764
No 147
>cd07034 TPP_PYR_PFOR_IOR-alpha_like Pyrimidine (PYR) binding domain of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase alpha subunit (IOR-alpha), and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain, of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit (IOR-alpha), and related proteins, subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. Th
Probab=96.27 E-value=0.044 Score=48.04 Aligned_cols=105 Identities=18% Similarity=0.119 Sum_probs=65.4
Q ss_pred hhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhcC
Q 017890 243 LPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYG 322 (364)
Q Consensus 243 lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G 322 (364)
..+|.|.+.+ +. +++++..|-|..+ ...+|..|...+.|+|+|+-+................+.....+. .
T Consensus 54 ~~~A~g~~r~----~~-~v~~~~~gpG~~n---~~~~l~~a~~~~~P~v~i~g~~~~~~~~~~~~~~~~~~~~~~~~~-~ 124 (160)
T cd07034 54 AEAAIGASAA----GA-RAMTATSGPGLNL---MAEALYLAAGAELPLVIVVAQRPGPSTGLPKPDQSDLMAARYGGH-P 124 (160)
T ss_pred HHHHHHHHhh----CC-cEEEeeCcchHHH---HHHHHHHHHhCCCCEEEEEeeCCCCCCCCCCcCcHHHHHHHhCCC-C
Confidence 3445555543 22 2666777888776 456788888888999999976543211100000000111222222 3
Q ss_pred eEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEE
Q 017890 323 IRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEV 358 (364)
Q Consensus 323 ~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea 358 (364)
+.+.++. +++++.+.+++|.+.++..++|++|..
T Consensus 125 ~~~~~~~--~~~~~~~~~~~A~~~a~~~~~Pv~l~~ 158 (160)
T cd07034 125 WPVLAPS--SVQEAFDLALEAFELAEKYRLPVIVLS 158 (160)
T ss_pred EEEEeCC--CHHHHHHHHHHHHHHHHHhCCCEEEEc
Confidence 6666665 799999999999999998889998864
No 148
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=96.16 E-value=0.077 Score=47.30 Aligned_cols=106 Identities=20% Similarity=0.124 Sum_probs=68.7
Q ss_pred hHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccccc--cc-c---CCccHHHH
Q 017890 244 PQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNIS--EQ-F---RSDGIVVK 317 (364)
Q Consensus 244 p~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~--~~-~---~~~~ia~~ 317 (364)
-+|-|.+.+. +-.++++..|=|.++ ..-++..|...+.|+|+|+-+.......... .+ . ..++..+.
T Consensus 49 ~mA~gyar~t----~~gv~~~t~GpG~~n---~~~gl~~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 121 (162)
T cd07038 49 YAADGYARVK----GLGALVTTYGVGELS---ALNGIAGAYAEHVPVVHIVGAPSTKAQASGLLLHHTLGDGDFDVFLKM 121 (162)
T ss_pred HHHHHHHHhh----CCEEEEEcCCccHHH---HHHHHHHHHHcCCCEEEEecCCCccccccccceeecccccchHHHHHH
Confidence 3555665543 233444444666665 4567888888899999999765432111100 00 0 01245567
Q ss_pred HhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEE
Q 017890 318 GRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEV 358 (364)
Q Consensus 318 a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea 358 (364)
++.+.-...+|. +++++.+++++|.+.+..+++|+.|++
T Consensus 122 ~~~~tk~~~~v~--~~~~i~~~v~~A~~~a~s~~gPV~l~i 160 (162)
T cd07038 122 FEEITCAAARLT--DPENAAEEIDRVLRTALRESRPVYIEI 160 (162)
T ss_pred HHhheeEEEEeC--CHHHHHHHHHHHHHHHHHCCCCEEEEc
Confidence 777777777886 788899999999988888889999986
No 149
>PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the N-terminal TPP binding domain of TPP enzymes.; GO: 0030976 thiamine pyrophosphate binding; PDB: 3HWX_1 3FLM_B 3HWW_A 2JLC_A 2JLA_A 2VBG_A 2VBF_B 2Q29_A 2Q27_B 2Q28_B ....
Probab=96.08 E-value=0.042 Score=49.06 Aligned_cols=108 Identities=21% Similarity=0.097 Sum_probs=69.5
Q ss_pred hhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhcC
Q 017890 243 LPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYG 322 (364)
Q Consensus 243 lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G 322 (364)
.-+|.|.+++. ++-.++++..|=|.++ ..-++..|...++|+|+|+-.-..........| ...+....++.+.
T Consensus 52 ~~~A~g~ar~~---g~~~v~~~~~GpG~~n---~~~~l~~A~~~~~Pvl~i~g~~~~~~~~~~~~q-~~~d~~~~~~~~~ 124 (172)
T PF02776_consen 52 AFMADGYARAT---GRPGVVIVTSGPGATN---ALTGLANAYADRIPVLVITGQRPSAGEGRGAFQ-QEIDQQSLFRPVT 124 (172)
T ss_dssp HHHHHHHHHHH---SSEEEEEEETTHHHHT---THHHHHHHHHTT-EEEEEEEESSGGGTTTTSTT-SSTHHHHHHGGGS
T ss_pred HHHHHHHHHhh---ccceEEEeecccchHH---HHHHHhhcccceeeEEEEecccchhhhcccccc-cchhhcchhcccc
Confidence 34566666543 2223344444455554 345677788889999999987765433311111 1235667788888
Q ss_pred eEEEEEeCCCHHHHHHHHHHHHHHh-hcCCCcEEEEEE
Q 017890 323 IRSIRVDGNDALAVYTAVQAAREMA-ISEKRPVLVEVR 359 (364)
Q Consensus 323 ~~~~~VDGnD~~av~~a~~~A~~~a-r~~~~P~LIea~ 359 (364)
-...+++ +++++.+++++|+..+ ....+|+.|++-
T Consensus 125 k~~~~v~--~~~~~~~~~~~A~~~a~~~~~gPv~l~ip 160 (172)
T PF02776_consen 125 KWSYRVT--SPDDLPEALDRAFRAATSGRPGPVYLEIP 160 (172)
T ss_dssp SEEEEEC--SGGGHHHHHHHHHHHHHHCSTSEEEEEEE
T ss_pred chhcccC--CHHHHHHHHHHHHHHhccCCCccEEEEcC
Confidence 7788886 6778888888888887 677899999874
No 150
>TIGR03845 sulfopyru_alph sulfopyruvate decarboxylase, alpha subunit. This model represents the alpha subunit, or the N-terminal region, of sulfopyruvate decarboxylase, an enzyme of coenzyme M biosynthesis. Coenzyme M is found almost exclusively in the methanogenic archaea. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=95.85 E-value=0.2 Score=44.72 Aligned_cols=106 Identities=15% Similarity=0.096 Sum_probs=67.6
Q ss_pred ccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHH-HcCCCEEEEEEcCCc-ccccccccccCCccHH-H
Q 017890 240 ATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAA-VMEAPVVFICRNNGW-AISTNISEQFRSDGIV-V 316 (364)
Q Consensus 240 G~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa-~~~LPvIfVV~NNg~-ais~~~~~~~~~~~ia-~ 316 (364)
+.+..+|.|..++ .++.++|+.+=|- |..-.+|..|. ..++|+++|+-.-+. +-..+ .|.....+- .
T Consensus 44 e~aa~~aAg~~~~-----~~~~~v~~~~sG~---gn~~~~l~~a~~~~~~Pvl~i~g~rg~~~~~~~--~q~~~g~~~~~ 113 (157)
T TIGR03845 44 EEGVGICAGAYLA-----GKKPAILMQSSGL---GNSINALASLNKTYGIPLPILASWRGVYKEKIP--AQIPMGRATPK 113 (157)
T ss_pred HHHHHHHHHHHHh-----cCCcEEEEeCCcH---HHHHHHHHHHHHcCCCCEEEEEeccCCCCCCCc--cccchhhhhHH
Confidence 3344555555533 3456788888773 34666788888 889999999955443 11111 111111111 1
Q ss_pred HHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEE
Q 017890 317 KGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEV 358 (364)
Q Consensus 317 ~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea 358 (364)
.....+++...++ +++++ .++.+|++.+.++++|+.|-+
T Consensus 114 ~l~~~~i~~~~i~--~~e~~-~~i~~A~~~a~~~~gPv~il~ 152 (157)
T TIGR03845 114 LLDTLGIPYTIPR--EPEEA-KLIEKAISDAYENSRPVAALL 152 (157)
T ss_pred HHHHcCCCeEEeC--CHHHH-HHHHHHHHHHHhCCCCEEEEE
Confidence 2245677788886 68899 999999999988999998854
No 151
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric. This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.
Probab=95.72 E-value=0.059 Score=62.07 Aligned_cols=95 Identities=16% Similarity=0.204 Sum_probs=69.0
Q ss_pred CeEEEEeCCCcc-ccccHHHHHHHHHHcCCCEEEEEEcCC-cccc-------cccc---------cccCCccHHHHHhhc
Q 017890 260 ACAVAYTGDGGT-SEGDFHAALNFAAVMEAPVVFICRNNG-WAIS-------TNIS---------EQFRSDGIVVKGRAY 321 (364)
Q Consensus 260 ~~vv~~~GDGa~-~eG~~~EALn~Aa~~~LPvIfVV~NNg-~ais-------~~~~---------~~~~~~~ia~~a~a~ 321 (364)
..||++.|||.+ ..|- .+|.-+...+.+|.+||-||. |+.+ ||.. .....-|+...+.++
T Consensus 952 ~sv~~~~GDG~~~diG~--~~l~~~~~r~~~v~~i~~dne~Y~nTggQ~S~~tp~g~~t~~~~~g~~~~kkd~~~~a~~~ 1029 (1165)
T TIGR02176 952 KSVWIIGGDGWAYDIGY--GGLDHVLASGKDVNVLVMDTEVYSNTGGQSSKATPTGAIAKFAAAGKRTSKKDLGMMAMTY 1029 (1165)
T ss_pred ceeEEEecchhhhccCc--cchHHHHHcCCCeEEEEECCcccccCCCcCCCCCCCcCccccCCCCCCCCCcCHHHHHHHC
Confidence 469999999955 6663 346677788899987877775 6432 2211 112345788889999
Q ss_pred CeEEE-EEe-CCCHHHHHHHHHHHHHHhhcCCCcEEEEEEe
Q 017890 322 GIRSI-RVD-GNDALAVYTAVQAAREMAISEKRPVLVEVRL 360 (364)
Q Consensus 322 G~~~~-~VD-GnD~~av~~a~~~A~~~ar~~~~P~LIea~T 360 (364)
|...+ ++- |-++.++.+++++|.+ .+||.+|++.+
T Consensus 1030 g~~yvA~~~~~~~~~~~~~~~~~A~~----~~G~s~i~~~~ 1066 (1165)
T TIGR02176 1030 GYVYVAQVSMGANMQQTLKAFREAEA----YDGPSIVIAYS 1066 (1165)
T ss_pred CCCEEEEEecccCHHHHHHHHHHHHc----CCCCEEEEEEC
Confidence 98666 665 6689999999999987 58999999875
No 152
>PRK13029 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=95.44 E-value=0.06 Score=61.66 Aligned_cols=114 Identities=17% Similarity=0.073 Sum_probs=74.6
Q ss_pred CCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCcc-ccccHHHHHHHHHHcCCCEEEEEEcCCc-cccccc--ccccCC
Q 017890 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGT-SEGDFHAALNFAAVMEAPVVFICRNNGW-AISTNI--SEQFRS 311 (364)
Q Consensus 236 sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~-~eG~~~EALn~Aa~~~LPvIfVV~NNg~-ais~~~--~~~~~~ 311 (364)
...||.....++|.+-+. .++.+|..+|||.+ ..|. -+|.-|...+.+++++|.+|.. ++++.. ....+.
T Consensus 494 ~~~MGgeg~~~~G~a~f~----~~~hv~aniGDgTffHSG~--~alr~AV~~~~nit~kIL~N~avAMTGgQp~~G~~~v 567 (1186)
T PRK13029 494 FSQMGGEGVAWIGQMPFS----RRRHVFQNLGDGTYFHSGL--LAIRQAIAAGVNITYKILYNDAVAMTGGQPVDGVLTV 567 (1186)
T ss_pred eeccCcchhhheeecccC----CCCCEEEEeccccchhcCH--HHHHHHHhcCCCEEEEEEeCcchhccCCCCCCCcCCH
Confidence 468888888888887652 34579999999998 3442 3577777888999888888875 555432 222333
Q ss_pred ccHHHHHhhcCeEEEEEeCCCHHHH-----------------HHHHHHHHHHhhcCCCcEEEEE
Q 017890 312 DGIVVKGRAYGIRSIRVDGNDALAV-----------------YTAVQAAREMAISEKRPVLVEV 358 (364)
Q Consensus 312 ~~ia~~a~a~G~~~~~VDGnD~~av-----------------~~a~~~A~~~ar~~~~P~LIea 358 (364)
+.|+...++.|++-+.|--.|+... .+++++++ |+..++++|..
T Consensus 568 ~~i~~~~~a~GV~~v~vv~d~p~~~~~~~~~~~gv~~~~R~~l~~vq~~l---r~~~GvsViI~ 628 (1186)
T PRK13029 568 PQIARQVHAEGVRRIVVVTDEPGKYRGVARLPAGVTVHHRDELDAVQREL---REVPGVSVLIY 628 (1186)
T ss_pred HHHHHHHHhCCccEEEEeCCCccccccccccCCccccccHHHHHHHHHHH---hcCCCcEEEEE
Confidence 4455577999998776632234333 33444443 24678887764
No 153
>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim
Probab=94.59 E-value=0.25 Score=44.34 Aligned_cols=105 Identities=15% Similarity=0.089 Sum_probs=61.4
Q ss_pred HHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhcCeE
Q 017890 245 QAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIR 324 (364)
Q Consensus 245 ~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~ 324 (364)
+|-|.|.+ .++-.++++..|=|.++ ..-++..|...+.|+|+|+-+-........ .+...|....++.+--.
T Consensus 50 mAdgyar~---sg~~gv~~~t~GpG~~n---~~~gl~~A~~~~~Pvl~i~g~~~~~~~~~~--~~q~~d~~~l~~~vtk~ 121 (162)
T cd07037 50 FALGLAKA---SGRPVAVVCTSGTAVAN---LLPAVVEAYYSGVPLLVLTADRPPELRGTG--ANQTIDQVGLFGDYVRW 121 (162)
T ss_pred HHHHHHHh---hCCCEEEEECCchHHHH---HhHHHHHHHhcCCCEEEEECCCCHHhcCCC--CCcccchhhhccceeeE
Confidence 45565544 34444555655777665 345677888889999999965433221111 11122344455555445
Q ss_pred EEEEeCCCHHH------HHHHHHHHHHHhhcCC-CcEEEEEE
Q 017890 325 SIRVDGNDALA------VYTAVQAAREMAISEK-RPVLVEVR 359 (364)
Q Consensus 325 ~~~VDGnD~~a------v~~a~~~A~~~ar~~~-~P~LIea~ 359 (364)
..+|. ++++ +.+.+++|+..++... ||++|++-
T Consensus 122 ~~~v~--~~~~~~~~~~~~~~i~~A~~~A~~~~~GPv~l~iP 161 (162)
T cd07037 122 SVDLP--PPEDDDDLWYLLRLANRAVLEALSAPPGPVHLNLP 161 (162)
T ss_pred EEecC--CcccchhHHHHHHHHHHHHHHHhCCCCCCEEEecc
Confidence 55553 3333 6667777777766654 89999863
No 154
>PRK08611 pyruvate oxidase; Provisional
Probab=94.18 E-value=0.5 Score=50.28 Aligned_cols=105 Identities=14% Similarity=0.095 Sum_probs=71.3
Q ss_pred HHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhcCeE
Q 017890 245 QAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIR 324 (364)
Q Consensus 245 ~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~ 324 (364)
+|.|.|.+ .++-.++++..|=|.++ .--++.-|...++|+|+|+-.-....... ......|..+.++.+--.
T Consensus 58 mAdgyar~---tg~~gv~~~t~GPG~~N---~l~gla~A~~~~~Pvl~ItG~~~~~~~~~--~~~q~~d~~~l~~~itk~ 129 (576)
T PRK08611 58 AAAAYAKL---TGKIGVCLSIGGPGAIH---LLNGLYDAKMDHVPVLALAGQVTSDLLGT--DFFQEVNLEKMFEDVAVY 129 (576)
T ss_pred HHHHHHHH---hCCceEEEECCCCcHHH---HHHHHHHHhhcCCCEEEEecCCcccccCC--CCccccCHHHHhhcccce
Confidence 45555543 34455666667888886 34567788889999999997654332211 111123556666666655
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEE
Q 017890 325 SIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVR 359 (364)
Q Consensus 325 ~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~ 359 (364)
..+|+ +++++.+++.+|+..+....||+.|++-
T Consensus 130 ~~~v~--~~~~~~~~l~~A~~~A~~~~GPV~l~iP 162 (576)
T PRK08611 130 NHQIM--SAENLPEIVNQAIRTAYEKKGVAVLTIP 162 (576)
T ss_pred eEEeC--CHHHHHHHHHHHHHHHhhCCCCEEEEeC
Confidence 66775 7888999999998888778899999863
No 155
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=94.13 E-value=0.47 Score=50.12 Aligned_cols=107 Identities=15% Similarity=0.158 Sum_probs=71.1
Q ss_pred HHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhcCeE
Q 017890 245 QAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIR 324 (364)
Q Consensus 245 ~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~ 324 (364)
+|-|.|.+ .++-.++++..|=|.++ .--++..|..-++|||+|+-.............+...|....++.+--.
T Consensus 55 mAdgyar~---tg~~gv~~~t~GPG~~N---~~~gia~A~~~~~Pvl~I~G~~~~~~~~~~~~~~q~~d~~~~~~~vtk~ 128 (554)
T TIGR03254 55 AAAAAGFL---TQKPGVCLTVSAPGFLN---GLTALANATTNCFPMIMISGSSERHIVDLQQGDYEEMDQLAAAKPFAKA 128 (554)
T ss_pred HHHHHHHH---hCCCEEEEEccCccHHh---HHHHHHHHHhcCCCEEEEEccCCccccccCCCCcchhhHHHHhhhhhee
Confidence 45555544 34445677777988887 3356778888999999998654432110001112223556677777777
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHhhcCC-CcEEEEEE
Q 017890 325 SIRVDGNDALAVYTAVQAAREMAISEK-RPVLVEVR 359 (364)
Q Consensus 325 ~~~VDGnD~~av~~a~~~A~~~ar~~~-~P~LIea~ 359 (364)
..+|+ +++++.+.+.+|++.+..+. ||+.|++-
T Consensus 129 ~~~v~--~~~~~~~~i~rA~~~A~~~~pGPV~l~iP 162 (554)
T TIGR03254 129 AYRVL--RAEDIGIGIARAIRTAVSGRPGGVYLDLP 162 (554)
T ss_pred EEEcC--CHHHHHHHHHHHHHHHhcCCCCcEEEEcC
Confidence 77887 78899999999988887653 78999863
No 156
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=93.90 E-value=0.62 Score=49.71 Aligned_cols=105 Identities=17% Similarity=0.151 Sum_probs=67.7
Q ss_pred HHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhcCeE
Q 017890 245 QAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIR 324 (364)
Q Consensus 245 ~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~ 324 (364)
+|-|.|.+ .++-.++++..|=|.++ ..-++..|...++|||+|+-.-...... ...+...+..+.++.+--.
T Consensus 58 ~Adgyar~---tg~~gv~~~t~GPG~~n---~~~gi~~A~~~~~Pvl~I~g~~~~~~~~--~~~~q~~d~~~l~~~~tk~ 129 (588)
T PRK07525 58 MADGYTRV---TGRMGMVIGQNGPGITN---FVTAVATAYWAHTPVVLVTPQAGTKTIG--QGGFQEAEQMPMFEDMTKY 129 (588)
T ss_pred HHHHHHHH---hCCCEEEEEcCCccHHH---HHHHHHHHhhcCCCEEEEeCCCCcccCC--CCCCcccchhhhhhhheeE
Confidence 45555443 24445677777888886 3456778888899999998322110000 0011112444566666555
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEE
Q 017890 325 SIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVR 359 (364)
Q Consensus 325 ~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~ 359 (364)
..+|+ +++++.+++++|+..|+...||+.|++-
T Consensus 130 ~~~i~--~~~~~~~~i~rA~~~A~~~~GPV~i~iP 162 (588)
T PRK07525 130 QEEVR--DPSRMAEVLNRVFDKAKRESGPAQINIP 162 (588)
T ss_pred EEECC--CHHHHHHHHHHHHHHHhcCCCCEEEEcC
Confidence 66664 7888999999999888888899999874
No 157
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=93.80 E-value=0.55 Score=50.07 Aligned_cols=104 Identities=21% Similarity=0.217 Sum_probs=74.5
Q ss_pred HHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhcCeE
Q 017890 245 QAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIR 324 (364)
Q Consensus 245 ~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~ 324 (364)
+|-|.| |..++-.++++..|=|+++ .-.+|..|..-+.|+|+|.-.=.... ...+.+...|....++.+=-.
T Consensus 54 mAdgya---r~TGkpgV~~~tsGPGatN---~~tgla~A~~d~~Pll~itGqv~~~~--~g~~afQe~D~~~l~~p~tk~ 125 (550)
T COG0028 54 AADGYA---RATGKPGVCLVTSGPGATN---LLTGLADAYMDSVPLLAITGQVPTSL--IGTDAFQEVDQVGLFRPITKY 125 (550)
T ss_pred HHHHHH---HHcCCCEEEEECCCCcHHH---HHHHHHHHHhcCCCEEEEeCCccccc--cCcchhhhcchhhHhhhhhee
Confidence 455554 4456778999999999997 45678888889999999985221111 111112223666677777667
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHhhcCC-CcEEEEE
Q 017890 325 SIRVDGNDALAVYTAVQAAREMAISEK-RPVLVEV 358 (364)
Q Consensus 325 ~~~VDGnD~~av~~a~~~A~~~ar~~~-~P~LIea 358 (364)
..+|. +++++.+.+++|++.|..++ ||++|++
T Consensus 126 ~~~v~--~~~~ip~~i~~Af~~A~sgrpGpv~i~i 158 (550)
T COG0028 126 NFEVR--SPEDIPEVVARAFRIALSGRPGPVVVDL 158 (550)
T ss_pred EEEeC--CHHHHHHHHHHHHHHHhcCCCceEEEEc
Confidence 77776 78999999999999998877 8999986
No 158
>PRK07119 2-ketoisovalerate ferredoxin reductase; Validated
Probab=93.72 E-value=0.52 Score=47.43 Aligned_cols=108 Identities=18% Similarity=0.158 Sum_probs=73.6
Q ss_pred cchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCccHH--HHH
Q 017890 241 TQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIV--VKG 318 (364)
Q Consensus 241 ~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia--~~a 318 (364)
..+.+|+|+++| +.++++.+-++.+. -.+|.+..|+-..+|+++++-+-. .-++-. -+....|+. .+.
T Consensus 59 aA~~~a~GAs~a------G~Ra~taTSg~Gl~--lm~E~l~~a~~~e~P~v~v~v~R~-~p~~g~-t~~eq~D~~~~~~~ 128 (352)
T PRK07119 59 AAINMVYGAAAT------GKRVMTSSSSPGIS--LKQEGISYLAGAELPCVIVNIMRG-GPGLGN-IQPSQGDYFQAVKG 128 (352)
T ss_pred HHHHHHHHHHhh------CCCEEeecCcchHH--HHHHHHHHHHHccCCEEEEEeccC-CCCCCC-CcchhHHHHHHHhc
Confidence 346788898887 35688888888876 378999999999999988877654 221111 111112221 111
Q ss_pred h---hcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEe
Q 017890 319 R---AYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRL 360 (364)
Q Consensus 319 ~---a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T 360 (364)
. -++|.++ +-.|+.+.++.+.+|.+.+.+-+-|+++-..+
T Consensus 129 ~ghgd~~~~vl--~p~~~qEa~d~~~~Af~lAE~~~~PViv~~D~ 171 (352)
T PRK07119 129 GGHGDYRLIVL--APSSVQEMVDLTMLAFDLADKYRNPVMVLGDG 171 (352)
T ss_pred CCCCCcceEEE--eCCCHHHHHHHHHHHHHHHHHhCCCEEEEcch
Confidence 1 1345554 55589999999999999998888999886554
No 159
>PRK07524 hypothetical protein; Provisional
Probab=93.43 E-value=0.97 Score=47.51 Aligned_cols=108 Identities=20% Similarity=0.083 Sum_probs=71.3
Q ss_pred hHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccccccc-cCCccHHHHHhhcC
Q 017890 244 PQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQ-FRSDGIVVKGRAYG 322 (364)
Q Consensus 244 p~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~~-~~~~~ia~~a~a~G 322 (364)
-+|-|.|.. .++-.++++..|=|.++ ..-++.-|..-++|||+|+-............. ....|....++.+-
T Consensus 53 ~mAdgyar~---tg~~gv~~~t~GpG~~n---~~~gi~~A~~~~~Pvl~i~G~~~~~~~~~~~~~~~~~~d~~~l~~~~t 126 (535)
T PRK07524 53 FMADGYARV---SGKPGVCFIITGPGMTN---IATAMGQAYADSIPMLVISSVNRRASLGKGRGKLHELPDQRAMVAGVA 126 (535)
T ss_pred HHHHHHHHH---hCCCeEEEECCCccHHH---HHHHHHHHHhcCCCEEEEeCCCChhhcCCCCccccccccHHHHhhhhc
Confidence 345555433 34445677777888886 345688888899999999864432111100000 11135667777777
Q ss_pred eEEEEEeCCCHHHHHHHHHHHHHHhhcC-CCcEEEEEE
Q 017890 323 IRSIRVDGNDALAVYTAVQAAREMAISE-KRPVLVEVR 359 (364)
Q Consensus 323 ~~~~~VDGnD~~av~~a~~~A~~~ar~~-~~P~LIea~ 359 (364)
-...+|+ +++++.+.+.+|+..|+.. .||+.|++-
T Consensus 127 k~~~~v~--~~~~~~~~l~~A~~~A~~~~~GPV~l~iP 162 (535)
T PRK07524 127 AFSHTLM--SAEDLPEVLARAFAVFDSARPRPVHIEIP 162 (535)
T ss_pred eeEEEeC--CHHHHHHHHHHHHHHHhcCCCCcEEEEeC
Confidence 7777776 7889999999999888866 589999864
No 160
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=93.38 E-value=0.84 Score=48.47 Aligned_cols=107 Identities=16% Similarity=0.158 Sum_probs=69.4
Q ss_pred HHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhcCeE
Q 017890 245 QAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIR 324 (364)
Q Consensus 245 ~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~ 324 (364)
+|-|.+.+ .++-.++++..|=|.++ .--++..|..-++|||+|+-.-...........+...|....++.+--.
T Consensus 62 mAdgyar~---tg~~gv~~~t~GPG~~N---~l~gl~~A~~~~~Pvl~I~G~~~~~~~~~~~~~~q~~d~~~~~~~~tk~ 135 (569)
T PRK09259 62 AAAAAGFL---TQKPGVCLTVSAPGFLN---GLTALANATTNCFPMIMISGSSEREIVDLQQGDYEELDQLNAAKPFCKA 135 (569)
T ss_pred HHHHHHHH---hCCCEEEEEcCCccHHH---HHHHHHHHHhcCCCEEEEEccCCcccccccCCCccccchhhhhhhheee
Confidence 34455443 34445667777888886 3456888888999999998653322100001111223555667766666
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHhhcC-CCcEEEEEE
Q 017890 325 SIRVDGNDALAVYTAVQAAREMAISE-KRPVLVEVR 359 (364)
Q Consensus 325 ~~~VDGnD~~av~~a~~~A~~~ar~~-~~P~LIea~ 359 (364)
..+|+ +++++.+.+.+|+..|..+ .||+.|++-
T Consensus 136 s~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~iP 169 (569)
T PRK09259 136 AFRVN--RAEDIGIGVARAIRTAVSGRPGGVYLDLP 169 (569)
T ss_pred eEEcC--CHHHHHHHHHHHHHHhhhCCCCcEEEEeC
Confidence 77776 7889999999998888775 479999864
No 161
>PRK07064 hypothetical protein; Provisional
Probab=93.34 E-value=0.91 Score=47.71 Aligned_cols=107 Identities=21% Similarity=0.147 Sum_probs=68.9
Q ss_pred HHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccccccc-cCCccHHHHHhhcCe
Q 017890 245 QAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQ-FRSDGIVVKGRAYGI 323 (364)
Q Consensus 245 ~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~~-~~~~~ia~~a~a~G~ 323 (364)
+|.|.|.+ .++-.++++..|=|.++ .--++.-|..-+.|||+|+-+-.-......... ....+..+.++.+--
T Consensus 56 ~A~gyar~---tg~~~v~~~t~GpG~~N---~~~~i~~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~d~~~~~~~~tk 129 (544)
T PRK07064 56 MADAHARV---SGGLGVALTSTGTGAGN---AAGALVEALTAGTPLLHITGQIETPYLDQDLGYIHEAPDQLTMLRAVSK 129 (544)
T ss_pred HHHHHHHh---cCCCeEEEeCCCCcHHH---HHHHHHHHHhcCCCEEEEeCCCCcccccCCCcccccccCHHHHhhhhcc
Confidence 45566544 34445677777888887 345677888889999999864221100000000 011255666666655
Q ss_pred EEEEEeCCCHHHHHHHHHHHHHHhhcC-CCcEEEEEE
Q 017890 324 RSIRVDGNDALAVYTAVQAAREMAISE-KRPVLVEVR 359 (364)
Q Consensus 324 ~~~~VDGnD~~av~~a~~~A~~~ar~~-~~P~LIea~ 359 (364)
...+|+ +++++.+++++|+..+... .||+.|++-
T Consensus 130 ~~~~v~--~~~~~~~~i~~A~~~a~~~~~GPV~l~iP 164 (544)
T PRK07064 130 AAFRVR--SAETALATIREAVRVALTAPTGPVSVEIP 164 (544)
T ss_pred eEEEeC--CHHHHHHHHHHHHHHhccCCCCcEEEEeC
Confidence 677775 6888888888888887776 699999874
No 162
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=93.25 E-value=0.85 Score=48.50 Aligned_cols=105 Identities=17% Similarity=0.135 Sum_probs=67.9
Q ss_pred HHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhcCeE
Q 017890 245 QAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIR 324 (364)
Q Consensus 245 ~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~ 324 (364)
+|.|.|.. .++-.++++..|=|.++ .--++..|..-+.|||+|.-.-...... ...+...+....++.+--.
T Consensus 54 ~Adgyar~---tg~~gv~~~t~GPG~~N---~~~gla~A~~~~~Pvl~I~g~~~~~~~~--~~~~Q~~d~~~l~~~vtk~ 125 (579)
T TIGR03457 54 MADGFARV---TGRMSMVIGQNGPGVTN---CVTAIAAAYWAHTPVVIVTPEAGTKTIG--LGGFQEADQLPMFQEFTKY 125 (579)
T ss_pred HHHHHHHH---hCCCEEEEECCCchHHH---HHHHHHHHhhcCCCEEEEeCCCccccCC--CCCCcccchhhhhhcceeE
Confidence 45555433 34455666777888886 3456778888899999997322111000 1111112455566666556
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEE
Q 017890 325 SIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVR 359 (364)
Q Consensus 325 ~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~ 359 (364)
..+|. +++++.+.+++|+..|..+.||+.|++-
T Consensus 126 ~~~v~--~~~~~~~~i~~A~~~A~~~~GPV~l~iP 158 (579)
T TIGR03457 126 QGHVR--HPSRMAEVLNRCFERAWREMGPAQLNIP 158 (579)
T ss_pred EEecC--CHHHHHHHHHHHHHHHhcCCCCEEEEeC
Confidence 66674 7888999999998888888899999874
No 163
>PRK08659 2-oxoglutarate ferredoxin oxidoreductase subunit alpha; Validated
Probab=93.17 E-value=0.74 Score=46.77 Aligned_cols=110 Identities=17% Similarity=0.228 Sum_probs=71.4
Q ss_pred cchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcc-cccccccccCCccH-HHHH
Q 017890 241 TQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWA-ISTNISEQFRSDGI-VVKG 318 (364)
Q Consensus 241 ~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~a-is~~~~~~~~~~~i-a~~a 318 (364)
..+.+|+|+++| +.++++.+-=++++ -.+|.+-+|+-.++|+|+++-+..-. ...|+. ....|+ ..+.
T Consensus 59 aA~~~a~GAs~a------G~Ra~TaTSg~Gl~--lm~E~~~~a~~~e~P~Viv~~~R~gp~tg~p~~--~~q~D~~~~~~ 128 (376)
T PRK08659 59 ASMAAVIGASWA------GAKAMTATSGPGFS--LMQENIGYAAMTETPCVIVNVQRGGPSTGQPTK--PAQGDMMQARW 128 (376)
T ss_pred HHHHHHHhHHhh------CCCeEeecCCCcHH--HHHHHHHHHHHcCCCEEEEEeecCCCCCCCCCC--cCcHHHHHHhc
Confidence 346788898887 33566655444444 35788999999999998888776431 111221 111222 2333
Q ss_pred hhcC-eEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEe
Q 017890 319 RAYG-IRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRL 360 (364)
Q Consensus 319 ~a~G-~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T 360 (364)
.++| .+.+.+.-.|+.+.++.+..|.+.+.+.+-|++|-..+
T Consensus 129 ~~hgd~~~ivl~p~~~QEa~d~~~~Af~lAE~~~~PViv~~D~ 171 (376)
T PRK08659 129 GTHGDHPIIALSPSSVQECFDLTIRAFNLAEKYRTPVIVLADE 171 (376)
T ss_pred ccCCCcCcEEEeCCCHHHHHHHHHHHHHHHHHHCCCEEEEech
Confidence 3333 23244456689999999999999998888999886654
No 164
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=93.07 E-value=0.89 Score=48.19 Aligned_cols=105 Identities=17% Similarity=0.146 Sum_probs=69.0
Q ss_pred HHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhcCeE
Q 017890 245 QAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIR 324 (364)
Q Consensus 245 ~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~ 324 (364)
+|-|.|.. .+.-.++++..|=|.++ .--++..|..-+.|||+|.-.-....... ..+...|....++.+--.
T Consensus 58 ~Adgyar~---tg~~gv~~~t~GpG~~N---~l~gi~~A~~~~~Pvl~i~G~~~~~~~~~--~~~q~~d~~~i~~~~tk~ 129 (572)
T PRK06456 58 AADGYARA---SGVPGVCTATSGPGTTN---LVTGLITAYWDSSPVIAITGQVPRSVMGK--MAFQEADAMGVFENVTKY 129 (572)
T ss_pred HHHHHHHh---hCCCEEEEeCCCCCHHH---HHHHHHHHHhhCCCEEEEecCCCccccCC--CCccccchhhhhhcccee
Confidence 45555543 33444555567888886 34567788888999999986443221111 111122455666666666
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHhhcCC-CcEEEEEE
Q 017890 325 SIRVDGNDALAVYTAVQAAREMAISEK-RPVLVEVR 359 (364)
Q Consensus 325 ~~~VDGnD~~av~~a~~~A~~~ar~~~-~P~LIea~ 359 (364)
..+|+ +++++.+++.+|++.|+.+. ||+.|++-
T Consensus 130 ~~~v~--~~~~~~~~l~~A~~~A~~~~~GPV~l~iP 163 (572)
T PRK06456 130 VIGIK--RIDEIPQWIKNAFYIATTGRPGPVVIDIP 163 (572)
T ss_pred EEEeC--CHHHHHHHHHHHHHHHhcCCCCcEEEecC
Confidence 77775 78899999999998888765 89999864
No 165
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=93.07 E-value=0.95 Score=48.25 Aligned_cols=106 Identities=18% Similarity=0.179 Sum_probs=69.5
Q ss_pred hHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhcCe
Q 017890 244 PQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGI 323 (364)
Q Consensus 244 p~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~ 323 (364)
-+|.|.|.+ .++-.++++..|=|.++ .--++.-|..-++|||+|+-.-..... ........|....++.+--
T Consensus 52 ~~Adgyar~---tg~~gv~~~t~GPG~~n---~l~~i~~A~~~~~Pvl~I~G~~~~~~~--~~~~~q~~d~~~l~~~~tk 123 (586)
T PRK06276 52 HAADGYARA---SGKVGVCVATSGPGATN---LVTGIATAYADSSPVIALTGQVPTKLI--GNDAFQEIDALGIFMPITK 123 (586)
T ss_pred HHHHHHHHH---hCCCEEEEECCCccHHH---HHHHHHHHHhcCCCEEEEeCCCCcccc--CCCCCccccHhhHHhhhcc
Confidence 345555543 34455667777888886 345677888889999999843222111 0111112345566776666
Q ss_pred EEEEEeCCCHHHHHHHHHHHHHHhhcCC-CcEEEEEE
Q 017890 324 RSIRVDGNDALAVYTAVQAAREMAISEK-RPVLVEVR 359 (364)
Q Consensus 324 ~~~~VDGnD~~av~~a~~~A~~~ar~~~-~P~LIea~ 359 (364)
...+|+ +++++..++.+|++.|.... ||+.|++-
T Consensus 124 ~s~~v~--~~~~i~~~i~~A~~~A~~~~~GPV~l~iP 158 (586)
T PRK06276 124 HNFQIK--KPEEIPEIFRAAFEIAKTGRPGPVHIDLP 158 (586)
T ss_pred eEEecC--CHHHHHHHHHHHHHHhcCCCCCcEEEEcC
Confidence 677775 78889999999998887764 89999874
No 166
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=93.06 E-value=1.1 Score=47.48 Aligned_cols=105 Identities=14% Similarity=0.078 Sum_probs=68.0
Q ss_pred HHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhcCeE
Q 017890 245 QAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIR 324 (364)
Q Consensus 245 ~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~ 324 (364)
+|.|.|.+ .++-.++++..|=|.++ ..-++..|..-+.|+|+|+-.-...... .......+..+.++.+--.
T Consensus 54 mAdgyar~---tgkpgv~~~t~GPG~~N---~l~~l~~A~~~~~Pvl~i~G~~~~~~~~--~~~~q~~d~~~l~~~vtk~ 125 (549)
T PRK06457 54 AASVEAKI---TGKPSACMGTSGPGSIH---LLNGLYDAKMDHAPVIALTGQVESDMIG--HDYFQEVNLTKLFDDVAVF 125 (549)
T ss_pred HHHHHHHH---hCCCeEEEeCCCCchhh---hHHHHHHHHhcCCCEEEEecCCCccccC--CCcccccchhhhhccceeE
Confidence 45555543 34455666667888886 4466888888899999998653321111 1111122445555555445
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEE
Q 017890 325 SIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVR 359 (364)
Q Consensus 325 ~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~ 359 (364)
..+|. +++++.+++++|+..|....||+.|++-
T Consensus 126 ~~~v~--~~~~~~~~i~~A~~~a~~~~GPV~l~iP 158 (549)
T PRK06457 126 NQILI--NPENAEYIIRRAIREAISKRGVAHINLP 158 (549)
T ss_pred EEEeC--CHHHHHHHHHHHHHHHhcCCCCEEEEeC
Confidence 55665 6788888899998888777899999874
No 167
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=93.01 E-value=0.86 Score=48.41 Aligned_cols=105 Identities=19% Similarity=0.209 Sum_probs=71.3
Q ss_pred HHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhcCeE
Q 017890 245 QAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIR 324 (364)
Q Consensus 245 ~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~ 324 (364)
+|-|.|.+ .++-.++++..|=|.++ .--++..|...++|||+|+-.-...... ...+...|....++.+--.
T Consensus 57 mAdgYar~---tg~~gv~~~t~GPG~~n---~l~gi~~A~~~~~Pvl~i~G~~~~~~~~--~~~~q~~d~~~l~~~~tk~ 128 (574)
T PRK07979 57 MADGLARA---TGEVGVVLVTSGPGATN---AITGIATAYMDSIPLVVLSGQVATSLIG--YDAFQECDMVGISRPVVKH 128 (574)
T ss_pred HHHHHHHH---hCCceEEEECCCccHhh---hHHHHHHHhhcCCCEEEEECCCChhccC--CCCCceecHHHHhhcccce
Confidence 45555543 34556777778988886 3456778888899999998654322111 1112223556667766666
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHhhcCC-CcEEEEEE
Q 017890 325 SIRVDGNDALAVYTAVQAAREMAISEK-RPVLVEVR 359 (364)
Q Consensus 325 ~~~VDGnD~~av~~a~~~A~~~ar~~~-~P~LIea~ 359 (364)
..+|. +++++..++++|+..|..+. ||+.|++-
T Consensus 129 ~~~v~--~~~~~~~~l~~A~~~A~~~~~GPv~l~iP 162 (574)
T PRK07979 129 SFLVK--QTEDIPQVLKKAFWLAASGRPGPVVVDLP 162 (574)
T ss_pred EEEeC--CHHHHHHHHHHHHHHHccCCCCcEEEEcC
Confidence 77775 78999999999998888775 89999863
No 168
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=92.98 E-value=1.1 Score=48.21 Aligned_cols=105 Identities=22% Similarity=0.212 Sum_probs=69.7
Q ss_pred HHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhcCeE
Q 017890 245 QAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIR 324 (364)
Q Consensus 245 ~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~ 324 (364)
+|.|.|. ..++-.++++..|=|.++ ..-++.-|..-+.|||+|+-+-..... ....+...|....++.+--.
T Consensus 75 aA~gyar---~tgk~gv~~~t~GPG~~n---~l~gl~~A~~d~~Pvl~i~G~~~~~~~--~~~~~Qe~d~~~~~~~vtk~ 146 (616)
T PRK07418 75 AADGYAR---ATGKVGVCFGTSGPGATN---LVTGIATAQMDSVPMVVITGQVPRPAI--GTDAFQETDIFGITLPIVKH 146 (616)
T ss_pred HHHHHHH---HhCCCeEEEECCCccHHH---HHHHHHHHHhcCCCEEEEecCCCcccc--CCCCcccccHHHHhhhccee
Confidence 4555543 334555667777888886 345677888889999999864322110 01111223555666666555
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHhhcCC-CcEEEEEE
Q 017890 325 SIRVDGNDALAVYTAVQAAREMAISEK-RPVLVEVR 359 (364)
Q Consensus 325 ~~~VDGnD~~av~~a~~~A~~~ar~~~-~P~LIea~ 359 (364)
..+|+ +++++..++.+|++.|.... ||+.|++-
T Consensus 147 ~~~v~--~~~~i~~~l~~A~~~A~~~~~GPv~l~iP 180 (616)
T PRK07418 147 SYVVR--DPSDMARIVAEAFHIASSGRPGPVLIDIP 180 (616)
T ss_pred EEEeC--CHHHHHHHHHHHHHHHhcCCCCcEEEecc
Confidence 66776 78899999999998888776 99999864
No 169
>cd07033 TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and the beta subunits of the E1 component of the human pyruvate dehydrogenase complex (E1- PDHc), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included
Probab=92.88 E-value=0.85 Score=40.24 Aligned_cols=100 Identities=19% Similarity=0.167 Sum_probs=60.0
Q ss_pred hhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHH-HHHHcCCCEEEEEEcCCccc--ccccccccCCccHHHHHh
Q 017890 243 LPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALN-FAAVMEAPVVFICRNNGWAI--STNISEQFRSDGIVVKGR 319 (364)
Q Consensus 243 lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn-~Aa~~~LPvIfVV~NNg~ai--s~~~~~~~~~~~ia~~a~ 319 (364)
+++|.|+|+. + .++++..+ ..+.. ..++.+. .++.+++|+++++...++.. ..+++.. .++++-...
T Consensus 52 vg~A~GlA~~----G-~~pi~~~~--~~f~~-ra~dqi~~~~a~~~~pv~~~~~~~g~~~~~~G~tH~~--~~~~a~~~~ 121 (156)
T cd07033 52 VGIAAGLALH----G-LKPFVSTF--SFFLQ-RAYDQIRHDVALQNLPVKFVGTHAGISVGEDGPTHQG--IEDIALLRA 121 (156)
T ss_pred HHHHHHHHHC----C-CeEEEEEC--HHHHH-HHHHHHHHHHhccCCCeEEEEECCcEecCCCCcccch--HHHHHHhcC
Confidence 4556666642 3 34455554 44433 3455565 88899999999998776643 4444322 223322221
Q ss_pred hcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEE
Q 017890 320 AYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEV 358 (364)
Q Consensus 320 a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea 358 (364)
--|+.++. --|+.+++..++.|++ .++|++|-.
T Consensus 122 iPg~~v~~--Ps~~~~~~~ll~~a~~----~~~P~~irl 154 (156)
T cd07033 122 IPNMTVLR--PADANETAAALEAALE----YDGPVYIRL 154 (156)
T ss_pred CCCCEEEe--cCCHHHHHHHHHHHHh----CCCCEEEEe
Confidence 12565554 3478899999998886 467998753
No 170
>PRK08266 hypothetical protein; Provisional
Probab=92.77 E-value=1.2 Score=46.85 Aligned_cols=107 Identities=21% Similarity=0.171 Sum_probs=68.6
Q ss_pred HHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccccccccC-CccHHHHHhhcCe
Q 017890 245 QAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFR-SDGIVVKGRAYGI 323 (364)
Q Consensus 245 ~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~~~~-~~~ia~~a~a~G~ 323 (364)
+|.|.|.. .++-.++++..|=|.++ ..-++.-|..-+.|+|+|+-.-..........+.. ..+....++.+--
T Consensus 58 ~A~gyar~---tg~~~v~~~t~GpG~~N---~~~gi~~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~d~~~~~~~~tk 131 (542)
T PRK08266 58 MAFGYARS---TGRPGVCSVVPGPGVLN---AGAALLTAYGCNSPVLCLTGQIPSALIGKGRGHLHEMPDQLATLRSFTK 131 (542)
T ss_pred HHHHHHHH---hCCCeEEEECCCCcHHH---HHHHHHHHHhhCCCEEEEecCCChhhccCCCCcceecccHhhHHhhhcc
Confidence 55565544 23344566667888886 34567788889999999985322111000001111 1356667777766
Q ss_pred EEEEEeCCCHHHHHHHHHHHHHHhhcC-CCcEEEEEE
Q 017890 324 RSIRVDGNDALAVYTAVQAAREMAISE-KRPVLVEVR 359 (364)
Q Consensus 324 ~~~~VDGnD~~av~~a~~~A~~~ar~~-~~P~LIea~ 359 (364)
...+|+ +++++.+.+++|+..|..+ .||+.|++-
T Consensus 132 ~~~~v~--~~~~~~~~l~~A~~~a~~~~~GPV~l~iP 166 (542)
T PRK08266 132 WAERIE--HPSEAPALVAEAFQQMLSGRPRPVALEMP 166 (542)
T ss_pred eEEEeC--CHHHHHHHHHHHHHHHhhCCCCcEEEEeC
Confidence 677776 6888888888888877764 589999874
No 171
>PRK06112 acetolactate synthase catalytic subunit; Validated
Probab=92.65 E-value=1.1 Score=47.63 Aligned_cols=105 Identities=22% Similarity=0.145 Sum_probs=68.8
Q ss_pred HHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhcCeE
Q 017890 245 QAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIR 324 (364)
Q Consensus 245 ~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~ 324 (364)
+|.|.|.+ .+.-.++++..|=|.++ ..-++.-|...++|||+|+-.-...... .......|....++.+--.
T Consensus 64 ~Adgyar~---tg~~gv~~~t~GpG~~N---~~~gl~~A~~~~~Pvl~I~G~~~~~~~~--~~~~Q~~d~~~l~~~vtk~ 135 (578)
T PRK06112 64 MADGYARV---SGKVAVVTAQNGPAATL---LVAPLAEALKASVPIVALVQDVNRDQTD--RNAFQELDHIALFQSCTKW 135 (578)
T ss_pred HHHHHHHH---hCCCEEEEeCCCCcHHH---HHHHHHHHhhcCCCEEEEecCCccccCC--CCCccccChhhhhccccce
Confidence 45555543 34455666677888776 3466778888999999998542221111 1111123555667777666
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHhhcCC-CcEEEEEE
Q 017890 325 SIRVDGNDALAVYTAVQAAREMAISEK-RPVLVEVR 359 (364)
Q Consensus 325 ~~~VDGnD~~av~~a~~~A~~~ar~~~-~P~LIea~ 359 (364)
..+|+ +++++.+.+.+|+..|+.+. ||+.|++-
T Consensus 136 ~~~v~--~~~~~~~~i~~A~~~A~~~~~GPv~l~iP 169 (578)
T PRK06112 136 VRRVT--VAERIDDYVDQAFTAATSGRPGPVVLLLP 169 (578)
T ss_pred EEEeC--CHHHHHHHHHHHHHHHhhCCCCcEEEEcC
Confidence 77775 68888888999988887764 89999864
No 172
>TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase. This family consists of examples of phosphonopyruvate an decarboxylase enzyme that produces phosphonoacetaldehyde (Pald), the second step in the biosynthesis phosphonate-containing compounds. Since the preceding enzymate step, PEP phosphomutase (AepX, TIGR02320) favors the substrate PEP energetically, the decarboxylase is required to drive the reaction in the direction of phosphonate production. Pald is a precursor of natural products including antibiotics like bialaphos and phosphonothricin in Streptomyces species, phosphonate-modified molecules such as the polysaccharide B of Bacteroides fragilis, the phosphonolipids of Tetrahymena pyroformis, the glycosylinositolphospholipids of Trypanosoma cruzi. This gene generally occurs in prokaryotic organisms adjacent to the gene for AepX. Most often an aminotansferase (aepZ) is also present which leads to the production of the most common phosphonate compound, 2-aminoethylphosphonate (A
Probab=92.64 E-value=0.57 Score=47.40 Aligned_cols=115 Identities=16% Similarity=0.120 Sum_probs=70.6
Q ss_pred CCcccchhHHHHHHHHhhhccCCCeEEEEeCCCcccc-ccHHHHHHHHHHcCCCEEEEEEcCCccc--ccccccccCCcc
Q 017890 237 SPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSE-GDFHAALNFAAVMEAPVVFICRNNGWAI--STNISEQFRSDG 313 (364)
Q Consensus 237 g~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~e-G~~~EALn~Aa~~~LPvIfVV~NNg~ai--s~~~~~~~~~~~ 313 (364)
..=|.++++|.|+.+|- +++.++++=-.++.. =..-.+|+-...+++|++++|-.-|.-- ..|.+.. .+.-
T Consensus 33 ~~E~~av~iaaG~~lat-----G~~~~v~mQnSGlGn~vN~l~SL~~~~~y~iP~l~~i~~RG~~g~~depqh~~-~G~~ 106 (361)
T TIGR03297 33 ANEGAAVGLAAGAYLAT-----GKRAAVYMQNSGLGNAVNPLTSLADTEVYDIPLLLIVGWRGEPGVHDEPQHVK-QGRI 106 (361)
T ss_pred CCchHHHHHHHHHHHhc-----CCccEEEEecCchhhhhhHHHhhccccccCcCeeEEEecCCCCCCCCCchhhH-HhHH
Confidence 44677788888888872 234445542222221 0111122224668999999998777521 1122111 1233
Q ss_pred HHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEE
Q 017890 314 IVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEV 358 (364)
Q Consensus 314 ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea 358 (364)
..+..+++|++...++ .|.++..+++.+|.+++.+.++|+.|-+
T Consensus 107 t~~lL~~~~i~~~~~~-~~~~~~~~~~~~a~~~~~~~~~p~a~l~ 150 (361)
T TIGR03297 107 TLSLLDALEIPWEVLS-TDNDEALAQIERALAHALATSRPYALVV 150 (361)
T ss_pred HHHHHHHcCCCEEECC-CChHHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 4567889999999995 3566788888888888888899987644
No 173
>PLN02470 acetolactate synthase
Probab=92.60 E-value=1 Score=48.00 Aligned_cols=105 Identities=25% Similarity=0.254 Sum_probs=70.3
Q ss_pred HHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhcCeE
Q 017890 245 QAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIR 324 (364)
Q Consensus 245 ~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~ 324 (364)
+|-|.|.+ .++-.++++..|=|.++ ..-++.-|..-+.|||+|.-.-..... ....+...|....++.+--.
T Consensus 66 ~Adgyar~---tg~~gv~~~t~GPG~~N---~l~gia~A~~~~~Pvl~I~G~~~~~~~--~~~~~q~~d~~~l~~~~tk~ 137 (585)
T PLN02470 66 AAEGYAKA---SGKVGVCIATSGPGATN---LVTGLADALLDSVPLVAITGQVPRRMI--GTDAFQETPIVEVTRSITKH 137 (585)
T ss_pred HHHHHHHH---hCCCEEEEECCCccHHH---HHHHHHHHHhcCCcEEEEecCCChhhc--CCCcCcccchhhhhhhheEE
Confidence 45565544 34445677777888886 345677788889999999854332111 01111223445566666666
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHhhcCC-CcEEEEEE
Q 017890 325 SIRVDGNDALAVYTAVQAAREMAISEK-RPVLVEVR 359 (364)
Q Consensus 325 ~~~VDGnD~~av~~a~~~A~~~ar~~~-~P~LIea~ 359 (364)
..+|+ +++++.+++++|+..|+.+. ||+.|++-
T Consensus 138 ~~~v~--~~~~i~~~l~~A~~~A~s~~~GPV~l~iP 171 (585)
T PLN02470 138 NYLVM--DVEDIPRVIREAFFLASSGRPGPVLVDIP 171 (585)
T ss_pred EEEcC--CHHHHHHHHHHHHHHhcCCCCCeEEEEec
Confidence 67775 78999999999998888775 89999874
No 174
>TIGR01504 glyox_carbo_lig glyoxylate carboligase. Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.
Probab=92.56 E-value=1.6 Score=46.74 Aligned_cols=94 Identities=21% Similarity=0.276 Sum_probs=64.3
Q ss_pred CCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhcCeEEEEEeCCCHHHHHH
Q 017890 259 DACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYT 338 (364)
Q Consensus 259 ~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~~~~VDGnD~~av~~ 338 (364)
-.++++..|=|.++ .--++.-|...++|||+|+-.-....... ..+...|....++.+--...+|. +++++.+
T Consensus 68 ~gv~~~t~GpG~~N---~~~gla~A~~~~~Pvl~I~G~~~~~~~~~--~~~q~~D~~~~~~~vtk~~~~v~--~~~~i~~ 140 (588)
T TIGR01504 68 IGVCIGTSGPAGTD---MITGLYSASADSIPILCITGQAPRARLHK--EDFQAVDIAAIAKPVSKMAVTVR--EAALVPR 140 (588)
T ss_pred eEEEEECCCccHHH---HHHHHHHHhhcCCCEEEEecCCCccccCC--CcccccCHHHHhhhhceEEEEcC--CHHHHHH
Confidence 34555556888776 34567788888999999985444322111 11222356667777766677775 7889999
Q ss_pred HHHHHHHHhhcCC-CcEEEEEE
Q 017890 339 AVQAAREMAISEK-RPVLVEVR 359 (364)
Q Consensus 339 a~~~A~~~ar~~~-~P~LIea~ 359 (364)
++++|+..|+.+. ||+.|++-
T Consensus 141 ~i~~A~~~A~~~~~GPV~l~iP 162 (588)
T TIGR01504 141 VLQQAFHLMRSGRPGPVLIDLP 162 (588)
T ss_pred HHHHHHHHHccCCCCeEEEEeC
Confidence 9999998887764 79999874
No 175
>PRK08273 thiamine pyrophosphate protein; Provisional
Probab=92.56 E-value=0.96 Score=48.40 Aligned_cols=105 Identities=18% Similarity=0.070 Sum_probs=66.3
Q ss_pred HHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhcC-e
Q 017890 245 QAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYG-I 323 (364)
Q Consensus 245 ~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G-~ 323 (364)
+|-|.|.+ .++-.++++..|=|+++ .--++.-|..-++|||+|+-.=...... .......+..+.++.+- -
T Consensus 57 ~Adgyar~---tg~~gv~~~t~GPG~~n---~~~gi~~A~~d~vPvl~I~G~~~~~~~~--~~~~q~~d~~~l~~~vt~k 128 (597)
T PRK08273 57 MAVAHAKF---TGEVGVCLATSGPGAIH---LLNGLYDAKLDHVPVVAIVGQQARAALG--GHYQQEVDLQSLFKDVAGA 128 (597)
T ss_pred HHHHHHHH---hCCCEEEEECCCccHHH---HHHHHHHHHhcCCCEEEEecCCchhhcC--CCCCCccCHHHHHHHHHHH
Confidence 45555543 34445666677888887 3456777888899999998532211110 11111224445555554 3
Q ss_pred EEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEE
Q 017890 324 RSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVR 359 (364)
Q Consensus 324 ~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~ 359 (364)
...+|+ +++++.+.+++|+..|....+|+.|++-
T Consensus 129 ~~~~v~--~~~~~~~~l~~A~~~A~~~~gPV~i~iP 162 (597)
T PRK08273 129 FVQMVT--VPEQLRHLVDRAVRTALAERTVTAVILP 162 (597)
T ss_pred HeeEeC--CHHHHHHHHHHHHHHHhhCCCCEEEEeC
Confidence 455665 6888888888888888888899999864
No 176
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=92.50 E-value=1.2 Score=47.19 Aligned_cols=105 Identities=21% Similarity=0.252 Sum_probs=69.9
Q ss_pred HHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhcCeE
Q 017890 245 QAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIR 324 (364)
Q Consensus 245 ~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~ 324 (364)
+|.|.|.. .++-.++++..|=|.++ .--++.-|..-++|||+|+-.-...... .......|....++.+--.
T Consensus 54 ~Adgyar~---tg~~gv~~~t~GpG~~n---~l~~i~~A~~~~~Pvl~i~g~~~~~~~~--~~~~q~~d~~~~~~~~tk~ 125 (558)
T TIGR00118 54 AADGYARA---SGKVGVVLVTSGPGATN---LVTGIATAYMDSIPMVVFTGQVPTSLIG--SDAFQEADILGITMPITKH 125 (558)
T ss_pred HHHHHHHH---hCCCEEEEECCCCcHHH---HHHHHHHHHhcCCCEEEEecCCCccccC--CCCCcccChhhhhcCccce
Confidence 45555543 34455677777888886 4466788888999999998643221111 1111122455666777667
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHhhcCC-CcEEEEEE
Q 017890 325 SIRVDGNDALAVYTAVQAAREMAISEK-RPVLVEVR 359 (364)
Q Consensus 325 ~~~VDGnD~~av~~a~~~A~~~ar~~~-~P~LIea~ 359 (364)
..+|+ +++++.+.+.+|++.+.... ||+.|++-
T Consensus 126 ~~~v~--~~~~~~~~v~~A~~~A~~~~~GPV~i~iP 159 (558)
T TIGR00118 126 SFQVK--SAEDIPRIIKEAFHIATTGRPGPVLVDLP 159 (558)
T ss_pred eEEeC--CHHHHHHHHHHHHHHHhcCCCCeEEEEcC
Confidence 77785 68889999999998887764 89999874
No 177
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=92.48 E-value=1.1 Score=47.51 Aligned_cols=105 Identities=21% Similarity=0.242 Sum_probs=70.7
Q ss_pred HHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhcCeE
Q 017890 245 QAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIR 324 (364)
Q Consensus 245 ~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~ 324 (364)
+|-|.|.+ .++-.++++..|=|.++ .--++..|..-+.|||+|+-.-....... ..+...|....++.+--.
T Consensus 57 mAdgyar~---tg~~gv~~vt~GPG~~N---~l~gl~~A~~~~~Pvl~i~G~~~~~~~~~--~~~q~~d~~~l~~~itk~ 128 (574)
T PRK06466 57 MADGYARA---TGKTGVVLVTSGPGATN---AITGIATAYMDSIPMVVLSGQVPSTLIGE--DAFQETDMVGISRPIVKH 128 (574)
T ss_pred HHHHHHHH---hCCCEEEEECCCccHHH---HHHHHHHHHhcCCCEEEEecCCCccccCC--Ccccccchhhhhhcccee
Confidence 45555543 34456677777888886 34567788888999999986544322111 112223555666666666
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHhhcCC-CcEEEEEE
Q 017890 325 SIRVDGNDALAVYTAVQAAREMAISEK-RPVLVEVR 359 (364)
Q Consensus 325 ~~~VDGnD~~av~~a~~~A~~~ar~~~-~P~LIea~ 359 (364)
..+|+ +++++..++++|+..|..+. ||+.|++-
T Consensus 129 s~~v~--~~~~~~~~~~rA~~~A~~~~~GPV~l~iP 162 (574)
T PRK06466 129 SFMVK--HASEIPEIIKKAFYIAQSGRPGPVVVDIP 162 (574)
T ss_pred EEEcC--CHHHHHHHHHHHHHHHhcCCCCcEEEEcC
Confidence 77776 78899999999998888774 89999863
No 178
>PRK08322 acetolactate synthase; Reviewed
Probab=92.48 E-value=1.3 Score=46.63 Aligned_cols=105 Identities=17% Similarity=0.160 Sum_probs=68.8
Q ss_pred HHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhcCeE
Q 017890 245 QAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIR 324 (364)
Q Consensus 245 ~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~ 324 (364)
+|.|.|.+ .++-.++++..|=|.++ ..-++.-|..-++|+|+|+-+-...... .+.....|....++.+--.
T Consensus 53 ~A~gyar~---tg~~gv~~~t~GpG~~N---~~~~i~~A~~~~~Pll~i~g~~~~~~~~--~~~~q~~d~~~~~~~~tk~ 124 (547)
T PRK08322 53 MAATYGRL---TGKAGVCLSTLGPGATN---LVTGVAYAQLGGMPMVAITGQKPIKRSK--QGSFQIVDVVAMMAPLTKW 124 (547)
T ss_pred HHHHHHHh---hCCCEEEEECCCccHhH---HHHHHHHHhhcCCCEEEEeccccccccC--CCccccccHHHHhhhheeE
Confidence 45555544 34445666666888886 3456778888899999998543321111 1112223555666666555
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHhhcCC-CcEEEEEE
Q 017890 325 SIRVDGNDALAVYTAVQAAREMAISEK-RPVLVEVR 359 (364)
Q Consensus 325 ~~~VDGnD~~av~~a~~~A~~~ar~~~-~P~LIea~ 359 (364)
..+|+ +++++.+.+.+|+..|.... ||+.|++-
T Consensus 125 ~~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~iP 158 (547)
T PRK08322 125 TRQIV--SPDNIPEVVREAFRLAEEERPGAVHLELP 158 (547)
T ss_pred EEEeC--CHHHHHHHHHHHHHHHccCCCCcEEEEcC
Confidence 66775 78899999999998887764 89999863
No 179
>PRK07586 hypothetical protein; Validated
Probab=92.46 E-value=1 Score=47.03 Aligned_cols=105 Identities=20% Similarity=0.078 Sum_probs=68.3
Q ss_pred HHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhcCeE
Q 017890 245 QAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIR 324 (364)
Q Consensus 245 ~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~ 324 (364)
+|-|.|.. .++-.++++..|=|.++ ...++..|..-+.|||+|+-.-...... .......|....++.+--.
T Consensus 54 mAdgyar~---tg~~gv~~~t~GPG~~N---~~~gl~~A~~~~~Pvl~i~G~~~~~~~~--~~~~q~~d~~~~~~~vtk~ 125 (514)
T PRK07586 54 AADGYARM---AGKPAATLLHLGPGLAN---GLANLHNARRARTPIVNIVGDHATYHRK--YDAPLTSDIEALARPVSGW 125 (514)
T ss_pred HHHHHHHH---HCCCEEEEecccHHHHH---HHHHHHHHHhcCCCEEEEecCCchhccC--CCcccccchhhhhccccce
Confidence 45555543 34445666777888775 3455667888899999998653321111 1111123555666666555
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHhhcC-CCcEEEEEE
Q 017890 325 SIRVDGNDALAVYTAVQAAREMAISE-KRPVLVEVR 359 (364)
Q Consensus 325 ~~~VDGnD~~av~~a~~~A~~~ar~~-~~P~LIea~ 359 (364)
..+|. +++++.+.+++|+..|+.+ .||+.|++-
T Consensus 126 ~~~v~--~~~~~~~~i~~A~~~a~~~~~GPV~l~iP 159 (514)
T PRK07586 126 VRRSE--SAADVAADAAAAVAAARGAPGQVATLILP 159 (514)
T ss_pred eeecC--CHHHHHHHHHHHHHHHhcCCCCcEEEEec
Confidence 66665 7888999999999888876 589999874
No 180
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=92.42 E-value=1.1 Score=47.68 Aligned_cols=105 Identities=24% Similarity=0.245 Sum_probs=70.8
Q ss_pred HHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhcCeE
Q 017890 245 QAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIR 324 (364)
Q Consensus 245 ~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~ 324 (364)
+|-|.|.. .++-.++++..|=|.++ .--++.-|...+.|||+|+-.-...... .+.....|....++.+--.
T Consensus 67 mAdgyar~---tg~~gv~~~t~GpG~~N---~~~gla~A~~~~~Pvl~I~G~~~~~~~~--~~~~q~~d~~~l~~~itk~ 138 (570)
T PRK06725 67 AAEGYARA---SGKVGVVFATSGPGATN---LVTGLADAYMDSIPLVVITGQVATPLIG--KDGFQEADVVGITVPVTKH 138 (570)
T ss_pred HHHHHHHH---hCCCeEEEECCCccHHH---HHHHHHHHhhcCcCEEEEecCCCccccc--CCCCcccchhhhhhcccee
Confidence 45555543 34445677777888876 3456777888899999998543322111 1112223566677777666
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHhhcCC-CcEEEEEE
Q 017890 325 SIRVDGNDALAVYTAVQAAREMAISEK-RPVLVEVR 359 (364)
Q Consensus 325 ~~~VDGnD~~av~~a~~~A~~~ar~~~-~P~LIea~ 359 (364)
..+|+ +++++.+.+++|+..|+... ||+.|++-
T Consensus 139 ~~~v~--~~~~i~~~l~~A~~~A~s~~~GPV~l~iP 172 (570)
T PRK06725 139 NYQVR--DVNQLSRIVQEAFYIAESGRPGPVLIDIP 172 (570)
T ss_pred EEEcC--CHHHHHHHHHHHHHHHhcCCCCcEEEccc
Confidence 77775 78899999999998888775 89999864
No 181
>PF01855 POR_N: Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg; InterPro: IPR002880 This family includes the N-terminal region of the pyruvate ferredoxin oxidoreductase, corresponding to the first two structural domains. This region is involved in inter subunit contacts []. Pyruvate oxidoreductase (POR) catalyses the final step in the fermentation of carbohydrates in anaerobic microorganisms []. This involves the oxidative decarboxylation of pyruvate with the participation of thiamine followed by the transfer of an acetyl moiety to coenzyme A for the synthesis of acetyl-CoA []. The family also includes pyruvate flavodoxin oxidoreductase as encoded by the nifJ gene in cyanobacterium which is required for growth on molecular nitrogen when iron is limited [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2PDA_B 2C3Y_A 2C3P_B 2UZA_A 2C3U_B 2C42_A 1B0P_B 2C3M_A 2C3O_B 1KEK_B ....
Probab=92.41 E-value=0.38 Score=45.69 Aligned_cols=108 Identities=19% Similarity=0.203 Sum_probs=64.9
Q ss_pred hhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccc-cccccccCCccHHHHHhhc
Q 017890 243 LPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAIS-TNISEQFRSDGIVVKGRAY 321 (364)
Q Consensus 243 lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais-~~~~~~~~~~~ia~~a~a~ 321 (364)
+.+++|++++- .++++.+-=.+++ -..|.|..|+..++|+++++-|-.-... .++.. ...|+. .++-+
T Consensus 49 ~~~~~GAs~aG------~ra~t~ts~~Gl~--lm~e~l~~a~~~~~P~V~~~~~R~g~~~g~~~~~--~q~D~~-~~~d~ 117 (230)
T PF01855_consen 49 MEAAIGASAAG------ARAMTATSGPGLN--LMAEPLYWAAGTELPIVIVVVQRAGPSPGLSTQP--EQDDLM-AARDS 117 (230)
T ss_dssp HHHHHHHHHTT--------EEEEEECCHHH--HHCCCHHHHHHTT--EEEEEEEB---SSSB--SB---SHHHH-HTTTS
T ss_pred HHHHHHHHhcC------CceEEeecCCccc--ccHhHHHHHHHcCCCEEEEEEECCCCCCCCcCcC--ChhHHH-HHHhc
Confidence 56778887762 3444444333333 2457788999999999888877543222 12111 111221 23367
Q ss_pred CeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeecc
Q 017890 322 GIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNFL 363 (364)
Q Consensus 322 G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R~ 363 (364)
||.++... |+.+.++.+..|.+.+.+-..|+++-..+++.
T Consensus 118 ~~~vl~p~--~~QEa~d~~~~A~~lAe~~~~PViv~~Dg~~~ 157 (230)
T PF01855_consen 118 GWIVLAPS--SPQEAYDMTLIAFNLAEKYQTPVIVLFDGFLC 157 (230)
T ss_dssp S-EEEE----SHHHHHHHHHHHHHHHHHHTSEEEEEEECCCC
T ss_pred CeEEEeCC--CHHHHHHHHHHHHHHHHHHCCCEEEEechhhh
Confidence 88877654 89999999999999999999999998776654
No 182
>PRK11269 glyoxylate carboligase; Provisional
Probab=92.40 E-value=1.4 Score=47.08 Aligned_cols=105 Identities=20% Similarity=0.235 Sum_probs=68.8
Q ss_pred HHHHHHHHhhhc-cCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhcCe
Q 017890 245 QAVGVAYSLKME-KKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGI 323 (364)
Q Consensus 245 ~AvG~A~A~k~~-~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~ 323 (364)
+|.|.|.+ . ++-.++++..|=|.++ .--++.-|..-+.|||+|+-.-....... ..+...|....++.+--
T Consensus 57 mAdGYar~---t~g~~gv~~~t~GPG~~N---~l~gl~~A~~~~~Pvl~I~G~~~~~~~~~--~~~q~~d~~~l~~~itk 128 (591)
T PRK11269 57 MAEGYTRA---TAGNIGVCIGTSGPAGTD---MITGLYSASADSIPILCITGQAPRARLHK--EDFQAVDIESIAKPVTK 128 (591)
T ss_pred HHHHHHHH---cCCCcEEEEECCCCcHHH---HHHHHHHHhhcCCCEEEEecCCCccccCC--CcccccChhhHhhccee
Confidence 45555443 3 3444566666888876 33567778888999999986544322111 11222345566666655
Q ss_pred EEEEEeCCCHHHHHHHHHHHHHHhhcCC-CcEEEEEE
Q 017890 324 RSIRVDGNDALAVYTAVQAAREMAISEK-RPVLVEVR 359 (364)
Q Consensus 324 ~~~~VDGnD~~av~~a~~~A~~~ar~~~-~P~LIea~ 359 (364)
...+|. +++++..++++|++.|+.+. ||+.|++-
T Consensus 129 ~s~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~iP 163 (591)
T PRK11269 129 WAVTVR--EPALVPRVFQQAFHLMRSGRPGPVLIDLP 163 (591)
T ss_pred EEEEcC--CHHHHHHHHHHHHHHHhhCCCCeEEEEeC
Confidence 666674 78899999999998887764 89999874
No 183
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=92.31 E-value=1.3 Score=47.53 Aligned_cols=105 Identities=24% Similarity=0.281 Sum_probs=69.5
Q ss_pred HHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhcCeE
Q 017890 245 QAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIR 324 (364)
Q Consensus 245 ~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~ 324 (364)
+|.|.|.+ .++-.++++..|=|.++ ..-++.-|..-++|+|+|+-.-...... ...+...|....++.+--.
T Consensus 84 ~Adgyar~---tg~~gv~~~t~GPG~~N---~l~gl~~A~~~~~PllvI~G~~~~~~~~--~~~~q~~d~~~l~~~~tk~ 155 (612)
T PRK07789 84 AAEGYAQA---TGRVGVCMATSGPGATN---LVTPIADANMDSVPVVAITGQVGRGLIG--TDAFQEADIVGITMPITKH 155 (612)
T ss_pred HHHHHHHH---hCCCEEEEECCCccHHH---HHHHHHHHhhcCCCEEEEecCCCccccC--CCcCcccchhhhhhcceeE
Confidence 45555443 34455666777888886 3456777888899999998643321111 1112223555666666666
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHhhcC-CCcEEEEEE
Q 017890 325 SIRVDGNDALAVYTAVQAAREMAISE-KRPVLVEVR 359 (364)
Q Consensus 325 ~~~VDGnD~~av~~a~~~A~~~ar~~-~~P~LIea~ 359 (364)
..+|+ +++++.+.+.+|+..++.+ .||+.|++-
T Consensus 156 s~~v~--~~~~i~~~l~~A~~~A~~~~~GPV~l~iP 189 (612)
T PRK07789 156 NFLVT--DADDIPRVIAEAFHIASTGRPGPVLVDIP 189 (612)
T ss_pred EEEcC--CHHHHHHHHHHHHHHHhcCCCceEEEEEc
Confidence 66775 7899999999999888876 489999874
No 184
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=92.26 E-value=1.1 Score=47.26 Aligned_cols=105 Identities=25% Similarity=0.266 Sum_probs=68.4
Q ss_pred HHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhcCeE
Q 017890 245 QAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIR 324 (364)
Q Consensus 245 ~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~ 324 (364)
+|.|.|.+ .++-.++++..|=|.++ ..-++.-|..-++|||+|+-.-....... ......|....++.+--.
T Consensus 53 ~Adgyar~---sg~~gv~~~t~GpG~~n---~~~~l~~A~~~~~Pvl~i~g~~~~~~~~~--~~~q~~d~~~~~~~~tk~ 124 (548)
T PRK08978 53 AAIGYARA---TGKVGVCIATSGPGATN---LITGLADALLDSVPVVAITGQVSSPLIGT--DAFQEIDVLGLSLACTKH 124 (548)
T ss_pred HHHHHHHH---hCCCEEEEECCCCcHHH---HHHHHHHHhhcCCCEEEEecCCCccccCC--CCCcccchhccccCceee
Confidence 45555544 34455667777888886 44667788888999999986433211111 111112444555555555
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHhhcCC-CcEEEEEE
Q 017890 325 SIRVDGNDALAVYTAVQAAREMAISEK-RPVLVEVR 359 (364)
Q Consensus 325 ~~~VDGnD~~av~~a~~~A~~~ar~~~-~P~LIea~ 359 (364)
..+|+ +++++...+++|++.|+... ||+.|++-
T Consensus 125 ~~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~iP 158 (548)
T PRK08978 125 SFLVQ--SLEELPEIMAEAFEIASSGRPGPVLVDIP 158 (548)
T ss_pred EEEEC--CHHHHHHHHHHHHHHHhcCCCCcEEEecC
Confidence 66775 78899999999998887764 89999864
No 185
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=92.07 E-value=1.4 Score=46.62 Aligned_cols=105 Identities=15% Similarity=0.136 Sum_probs=66.9
Q ss_pred HHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhcCeE
Q 017890 245 QAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIR 324 (364)
Q Consensus 245 ~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~ 324 (364)
+|.|.|.+ .++-.++++..|=|.++ ..-++.-|-.-+.|||+|.-.-...... .......|....++.+=-.
T Consensus 61 ~Adgyar~---tg~~gv~~~t~GpG~~N---~~~gi~~A~~~~~Pvl~i~g~~~~~~~~--~~~~q~~d~~~l~~~~tk~ 132 (557)
T PRK08199 61 MAEAYGKL---TGRPGICFVTRGPGATN---ASIGVHTAFQDSTPMILFVGQVARDFRE--REAFQEIDYRRMFGPMAKW 132 (557)
T ss_pred HHHHHHHh---cCCCEEEEeCCCccHHH---HHHHHHHHhhcCCCEEEEecCCccccCC--CCcccccCHHHhhhhhhce
Confidence 45555543 34445666777888886 4456778888899999998543221111 1111112444555555444
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHhhcCC-CcEEEEEE
Q 017890 325 SIRVDGNDALAVYTAVQAAREMAISEK-RPVLVEVR 359 (364)
Q Consensus 325 ~~~VDGnD~~av~~a~~~A~~~ar~~~-~P~LIea~ 359 (364)
..+| ++++++.+.+.+|+..|..+. ||+.|++-
T Consensus 133 ~~~v--~~~~~~~~~~~~A~~~A~~~~~GPV~l~iP 166 (557)
T PRK08199 133 VAEI--DDAARIPELVSRAFHVATSGRPGPVVLALP 166 (557)
T ss_pred eeec--CCHHHHHHHHHHHHHHHhcCCCCcEEEEcC
Confidence 5566 478899999999998887774 89999863
No 186
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=91.92 E-value=1.4 Score=46.76 Aligned_cols=106 Identities=20% Similarity=0.241 Sum_probs=67.8
Q ss_pred hHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhcCe
Q 017890 244 PQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGI 323 (364)
Q Consensus 244 p~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~ 323 (364)
-+|.|.|.+. ++-.++++..|=|.++ .--++.-|..-+.|||+|.-.-....... ......|....++.+--
T Consensus 67 ~~A~gyar~t---g~~gv~~~t~GPG~~N---~~~gl~~A~~~~~Pvl~ItG~~~~~~~~~--~~~q~~d~~~l~~~~tk 138 (571)
T PRK07710 67 HAAEGYARIS---GKPGVVIATSGPGATN---VVTGLADAMIDSLPLVVFTGQVATSVIGS--DAFQEADIMGITMPVTK 138 (571)
T ss_pred HHHHHHHHHh---CCCeEEEECCCccHHH---HHHHHHHHhhcCCCEEEEeccCCccccCC--CCccccchhhhhhcccc
Confidence 3455655442 3445666667888776 34567778888999999986544321111 11112245555555544
Q ss_pred EEEEEeCCCHHHHHHHHHHHHHHhhcCC-CcEEEEEE
Q 017890 324 RSIRVDGNDALAVYTAVQAAREMAISEK-RPVLVEVR 359 (364)
Q Consensus 324 ~~~~VDGnD~~av~~a~~~A~~~ar~~~-~P~LIea~ 359 (364)
...+|. +++++.+.+++|+..++.+. ||+.|++-
T Consensus 139 ~~~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~iP 173 (571)
T PRK07710 139 HNYQVR--KASDLPRIIKEAFHIATTGRPGPVLIDIP 173 (571)
T ss_pred eEEecC--CHHHHHHHHHHHHHHHhcCCCCcEEEEcC
Confidence 555664 78888899999998887764 89999874
No 187
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=91.91 E-value=1.4 Score=47.21 Aligned_cols=105 Identities=23% Similarity=0.230 Sum_probs=69.8
Q ss_pred HHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhcCeE
Q 017890 245 QAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIR 324 (364)
Q Consensus 245 ~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~ 324 (364)
+|-|.|.. .++-.++++..|=|.++ ..-++.-|...+.|||+|.-.-....... ..+...|....++.+--.
T Consensus 64 mAdgyar~---tg~~gv~~~t~GPG~~N---~l~gia~A~~~~~Pvl~i~G~~~~~~~~~--~~~q~~d~~~l~~~vtk~ 135 (595)
T PRK09107 64 AAEGYARS---TGKPGVVLVTSGPGATN---AVTPLQDALMDSIPLVCITGQVPTHLIGS--DAFQECDTVGITRPCTKH 135 (595)
T ss_pred HHHHHHHH---hCCCEEEEECCCccHhH---HHHHHHHHhhcCCCEEEEEcCCChhhcCC--CCCcccchhhhhhhheEE
Confidence 45555443 34456677777888886 34567788888999999986544321111 111123455566666555
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHhhcCC-CcEEEEEE
Q 017890 325 SIRVDGNDALAVYTAVQAAREMAISEK-RPVLVEVR 359 (364)
Q Consensus 325 ~~~VDGnD~~av~~a~~~A~~~ar~~~-~P~LIea~ 359 (364)
..+|+ +++++.+.+.+|++.|+.+. ||+.|++-
T Consensus 136 ~~~v~--~~~~i~~~l~~A~~~A~s~~~GPV~l~iP 169 (595)
T PRK09107 136 NWLVK--DVNDLARVIHEAFHVATSGRPGPVVVDIP 169 (595)
T ss_pred EEEeC--CHHHHHHHHHHHHHHhcCCCCceEEEecC
Confidence 66775 78999999999999888874 89999863
No 188
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=91.86 E-value=1.5 Score=46.46 Aligned_cols=105 Identities=21% Similarity=0.218 Sum_probs=66.9
Q ss_pred HHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhcCeE
Q 017890 245 QAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIR 324 (364)
Q Consensus 245 ~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~ 324 (364)
+|.|.|.+. +.-.++++..|=|.++ ..-++.-|...+.|||+|.-.-....... ..+...|....++.+--.
T Consensus 66 ~Adgyar~t---g~~gv~~~t~GpG~~N---~l~gl~~A~~~~~Pvl~i~G~~~~~~~~~--~~~q~~d~~~~~~~~tk~ 137 (564)
T PRK08155 66 IAQGMARTT---GKPAVCMACSGPGATN---LVTAIADARLDSIPLVCITGQVPASMIGT--DAFQEVDTYGISIPITKH 137 (564)
T ss_pred HHHHHHHHc---CCCeEEEECCCCcHHH---HHHHHHHHHhcCCCEEEEeccCCcccccC--CCccccchhhhhhccceE
Confidence 466665542 3334555566888876 34567778889999999985433221111 111112444555555555
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHhhcCC-CcEEEEEE
Q 017890 325 SIRVDGNDALAVYTAVQAAREMAISEK-RPVLVEVR 359 (364)
Q Consensus 325 ~~~VDGnD~~av~~a~~~A~~~ar~~~-~P~LIea~ 359 (364)
..+|+ +++++...+.+|++.|+... ||+.|++-
T Consensus 138 ~~~v~--~~~~~~~~i~~A~~~a~~~~~GPV~i~iP 171 (564)
T PRK08155 138 NYLVR--DIEELPQVISDAFRIAQSGRPGPVWIDIP 171 (564)
T ss_pred EEEcC--CHHHHHHHHHHHHHHHhcCCCCcEEEEcC
Confidence 66665 78899999999998887774 89999873
No 189
>PRK12474 hypothetical protein; Provisional
Probab=91.81 E-value=1.6 Score=45.86 Aligned_cols=105 Identities=21% Similarity=0.058 Sum_probs=67.5
Q ss_pred HHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhcCeE
Q 017890 245 QAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIR 324 (364)
Q Consensus 245 ~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~ 324 (364)
+|-|.|.+ .++-.++++..|=|.++ ..-++..|..-+.|||+|+-......... ......|....++.+--.
T Consensus 58 mAdgYaR~---tg~~gv~~~t~GpG~~N---~~~gl~~A~~d~~Pvl~i~G~~~~~~~~~--~~~q~~d~~~~~~~vtk~ 129 (518)
T PRK12474 58 AADGYGRI---AGKPAVTLLHLGPGLAN---GLANLHNARRAASPIVNIVGDHAVEHLQY--DAPLTSDIDGFARPVSRW 129 (518)
T ss_pred HHHHHHHH---hCCCEEEEEccchhHhH---hHHHHHHHhhcCCCEEEEeccCchhhcCC--CCccccCHHHhhhcccce
Confidence 45555443 35556677777888775 34556678888999999986433211111 111113555666665555
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHhhcCC-CcEEEEEE
Q 017890 325 SIRVDGNDALAVYTAVQAAREMAISEK-RPVLVEVR 359 (364)
Q Consensus 325 ~~~VDGnD~~av~~a~~~A~~~ar~~~-~P~LIea~ 359 (364)
..+|+ +++++.+++++|+..|..+. +|+.|++-
T Consensus 130 ~~~v~--~~~~~~~~i~rA~~~A~~~~~GPV~l~iP 163 (518)
T PRK12474 130 VHRSA--SAGAVDSDVARAVQAAQSAPGGIATLIMP 163 (518)
T ss_pred eeecC--CHHHHHHHHHHHHHHHhcCCCCcEEEEec
Confidence 55664 78899999999998877765 89999864
No 190
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase. Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.
Probab=91.77 E-value=1.8 Score=46.06 Aligned_cols=105 Identities=14% Similarity=0.047 Sum_probs=66.6
Q ss_pred HHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhcCeE
Q 017890 245 QAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIR 324 (364)
Q Consensus 245 ~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~ 324 (364)
+|-|.|. ..++-.++++..|=|.++ ..-++.-|...++|||+|+-.-...... .......+....++.+--.
T Consensus 53 ~Adgyar---~tgk~gv~~~t~GPG~~n---~~~~i~~A~~~~~Pvl~I~G~~~~~~~~--~~~~q~id~~~~~~~vtk~ 124 (575)
T TIGR02720 53 AAAADAK---LTGKIGVCFGSAGPGATH---LLNGLYDAKEDHVPVLALVGQVPTTGMN--MDTFQEMNENPIYADVAVY 124 (575)
T ss_pred HHHHHHH---hhCCceEEEeCCCCcHHH---HHHHHHHHhhcCCCEEEEecCCccccCC--CCCcceechhhhhhhcceE
Confidence 3445443 345556777777888886 4466778888899999998654321111 1111112344455555555
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEE
Q 017890 325 SIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVR 359 (364)
Q Consensus 325 ~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~ 359 (364)
..+|. +++.+.+.+.+|+..|....||+.|++-
T Consensus 125 ~~~v~--~~~~~~~~i~~A~~~A~~~~GPV~l~iP 157 (575)
T TIGR02720 125 NRTAM--TAESLPHVIDEAIRRAYAHNGVAVVTIP 157 (575)
T ss_pred EEEeC--CHHHHHHHHHHHHHHHhhCCCCEEEEEC
Confidence 55664 5777777788887777777899999874
No 191
>TIGR02418 acolac_catab acetolactate synthase, catabolic. Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family.
Probab=91.50 E-value=1.9 Score=45.40 Aligned_cols=105 Identities=25% Similarity=0.130 Sum_probs=66.8
Q ss_pred HHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhcCeE
Q 017890 245 QAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIR 324 (364)
Q Consensus 245 ~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~ 324 (364)
+|-|.|. ..++-.++++..|=|.++ ..-++.-|...+.|+|+|+-.-...... ...+...+....++.+--.
T Consensus 51 ~Adgyar---~tg~~gv~~~t~GpG~~n---~l~gl~~A~~~~~Pvl~I~G~~~~~~~~--~~~~q~~d~~~~~~~~tk~ 122 (539)
T TIGR02418 51 MAQAVGR---ITGKPGVALVTSGPGCSN---LVTGLATANSEGDPVVAIGGQVKRADLL--KLTHQSMDNVALFRPITKY 122 (539)
T ss_pred HHHHHHH---HhCCceEEEECCCCCHhH---HHHHHHHHhhcCCCEEEEeCCCcccccc--cCcccccchhhhhhcceee
Confidence 4445443 334445677777888876 3456777888899999998643321111 1111223445556665445
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHhhcCC-CcEEEEEE
Q 017890 325 SIRVDGNDALAVYTAVQAAREMAISEK-RPVLVEVR 359 (364)
Q Consensus 325 ~~~VDGnD~~av~~a~~~A~~~ar~~~-~P~LIea~ 359 (364)
..+++ +++++.+.+.+|++.+.... ||+.|++-
T Consensus 123 ~~~i~--~~~~~~~~~~~A~~~a~~~~~GPV~l~iP 156 (539)
T TIGR02418 123 SAEVQ--DPDALSEVVANAFRAAESGKPGAAFVSLP 156 (539)
T ss_pred eeecC--CHHHHHHHHHHHHHHHhcCCCCCEEEEcC
Confidence 55664 78889888999988877664 79999863
No 192
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=91.45 E-value=1.7 Score=46.14 Aligned_cols=105 Identities=19% Similarity=0.220 Sum_probs=68.8
Q ss_pred HHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhcCeE
Q 017890 245 QAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIR 324 (364)
Q Consensus 245 ~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~ 324 (364)
+|-|.|.+ .++-.++++..|=|.++ .--++.-|...++|||+|.-.-...... ...+...|....++.+--.
T Consensus 57 mAdgyar~---tg~~gv~~~t~GpG~~n---~l~gia~A~~~~~Pvl~i~G~~~~~~~~--~~~~q~~d~~~~~~~itk~ 128 (572)
T PRK08979 57 MADGYARA---TGKVGVVLVTSGPGATN---TITGIATAYMDSIPMVVLSGQVPSNLIG--NDAFQECDMIGISRPVVKH 128 (572)
T ss_pred HHHHHHHH---hCCCeEEEECCCchHhH---HHHHHHHHhhcCCCEEEEecCCCccccC--CCCCcccchhHHhhhceeE
Confidence 45555543 34445666667888876 3355777888899999998543321111 1112223555666666556
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHhhcCC-CcEEEEEE
Q 017890 325 SIRVDGNDALAVYTAVQAAREMAISEK-RPVLVEVR 359 (364)
Q Consensus 325 ~~~VDGnD~~av~~a~~~A~~~ar~~~-~P~LIea~ 359 (364)
..+|+ +++++.+.+++|+..|+.+. ||+.|++-
T Consensus 129 ~~~v~--~~~~~~~~l~~A~~~A~~~~~GPV~l~iP 162 (572)
T PRK08979 129 SFLVK--DAEDIPEIIKKAFYIASTGRPGPVVIDLP 162 (572)
T ss_pred EEecC--CHHHHHHHHHHHHHHHhCCCCCcEEEecC
Confidence 77776 78899999999998887765 89999863
No 193
>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase.
Probab=91.37 E-value=1.4 Score=46.46 Aligned_cols=107 Identities=21% Similarity=0.119 Sum_probs=64.4
Q ss_pred HHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCccccccc---ccccC-CccHHHHHhh
Q 017890 245 QAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNI---SEQFR-SDGIVVKGRA 320 (364)
Q Consensus 245 ~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~---~~~~~-~~~ia~~a~a 320 (364)
+|-|.|.+ .++-.++++..|=|.++ .--++.-|..-++|||+|.-.-........ +.+.. .++..+.++.
T Consensus 53 ~Adgyar~---tg~~gv~~~t~GpG~~n---~~~gia~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (535)
T TIGR03394 53 AADAAARY---RGTLGVAAVTYGAGAFN---MVNAIAGAYAEKSPVVVISGAPGTTEGNAGLLLHHQGRTLDSQFQVFKE 126 (535)
T ss_pred HHhHHHHh---hCCceEEEEecchHHHh---hhhHHHHHhhcCCCEEEEECCCCcccccCCceeEeeccchHHHHHhhhh
Confidence 35555543 34456777777888887 335677888889999999854332111100 00110 1123455555
Q ss_pred cCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEE
Q 017890 321 YGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVR 359 (364)
Q Consensus 321 ~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~ 359 (364)
.--...+|. +++.+.+++++|+..|....+|+.|++-
T Consensus 127 vtk~~~~v~--~~~~~~~~~~~A~~~a~~~~gPv~i~iP 163 (535)
T TIGR03394 127 VTCDQAVLD--DPATAPAEIARVLGSARELSRPVYLEIP 163 (535)
T ss_pred heEEEEEeC--ChHHhHHHHHHHHHHHHHCCCCEEEEec
Confidence 544455664 5667777777777766667789999874
No 194
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=91.30 E-value=2.2 Score=45.62 Aligned_cols=105 Identities=23% Similarity=0.191 Sum_probs=67.0
Q ss_pred HHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhcCeE
Q 017890 245 QAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIR 324 (364)
Q Consensus 245 ~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~ 324 (364)
+|-|.|.+ .++-.++++..|=|.++ ..-++.-|...++|||+|.-.-...... ...+...|....++.+--.
T Consensus 74 ~AdgYar~---tg~~gv~~~t~GpG~~N---~l~gl~~A~~~~~Pvl~i~G~~~~~~~~--~~~~q~~d~~~l~~~itk~ 145 (587)
T PRK06965 74 AADGYARA---TGKVGVALVTSGPGVTN---AVTGIATAYMDSIPMVVISGQVPTAAIG--QDAFQECDTVGITRPIVKH 145 (587)
T ss_pred HHHHHHHH---hCCCeEEEECCCccHHH---HHHHHHHHhhcCCCEEEEecCCCccccC--CCCcccccHHHHhcCCcce
Confidence 45565544 34445666666877776 3456777888899999997432211100 1111123455566666556
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHhhcC-CCcEEEEEE
Q 017890 325 SIRVDGNDALAVYTAVQAAREMAISE-KRPVLVEVR 359 (364)
Q Consensus 325 ~~~VDGnD~~av~~a~~~A~~~ar~~-~~P~LIea~ 359 (364)
..+|. +++++.+.+.+|+..|+.+ .||+.|++-
T Consensus 146 ~~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~iP 179 (587)
T PRK06965 146 NFLVK--DVRDLAETVKKAFYIARTGRPGPVVVDIP 179 (587)
T ss_pred eEEeC--CHHHHHHHHHHHHHHHhcCCCCeEEEEeC
Confidence 66776 7888888999999888876 489999863
No 195
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=91.02 E-value=2.1 Score=45.43 Aligned_cols=105 Identities=20% Similarity=0.250 Sum_probs=67.3
Q ss_pred HHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhcCeE
Q 017890 245 QAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIR 324 (364)
Q Consensus 245 ~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~ 324 (364)
+|-|.|.+ .++-.++++..|=|.++ .--++.-|...+.|||+|.-.-....... ......|....++.+--.
T Consensus 57 mAdgyar~---tg~~gv~~~t~GpG~~N---~l~~i~~A~~~~~Pvlvi~G~~~~~~~~~--~~~q~~d~~~l~~~vtk~ 128 (574)
T PRK06882 57 MADGYARS---TGKVGCVLVTSGPGATN---AITGIATAYTDSVPLVILSGQVPSNLIGT--DAFQECDMLGISRPVVKH 128 (574)
T ss_pred HHHHHHHh---hCCCeEEEECCCccHHH---HHHHHHHHhhcCCCEEEEecCCCccccCC--Ccccccchhhhhhcccce
Confidence 45555443 34445666667888876 33567778888999999985443221111 111123455666666556
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHhhcC-CCcEEEEEE
Q 017890 325 SIRVDGNDALAVYTAVQAAREMAISE-KRPVLVEVR 359 (364)
Q Consensus 325 ~~~VDGnD~~av~~a~~~A~~~ar~~-~~P~LIea~ 359 (364)
..+|. +++++...+.+|+..|... .||+.|++-
T Consensus 129 s~~v~--~~~~~~~~l~~A~~~A~~~~~GPV~l~iP 162 (574)
T PRK06882 129 SFIVK--NAEDIPSTIKKAFYIASTGRPGPVVIDIP 162 (574)
T ss_pred EEEeC--CHHHHHHHHHHHHHHHhcCCCCCEEEecC
Confidence 66775 7888888888888877765 489999864
No 196
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=91.00 E-value=1.8 Score=45.92 Aligned_cols=105 Identities=19% Similarity=0.214 Sum_probs=68.2
Q ss_pred HHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhcCeE
Q 017890 245 QAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIR 324 (364)
Q Consensus 245 ~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~ 324 (364)
+|-|.|.. .++-.++++..|=|.++ .--++.-|..-++|||+|.-.-...-.. ...+...+....++.+--.
T Consensus 63 ~Adgyar~---tg~~gv~~~t~GPG~~n---~~~gla~A~~~~~Pvl~i~G~~~~~~~~--~~~~q~~d~~~~~~~itk~ 134 (566)
T PRK07282 63 EAEGYAKS---TGKLGVAVVTSGPGATN---AITGIADAMSDSVPLLVFTGQVARAGIG--KDAFQEADIVGITMPITKY 134 (566)
T ss_pred HHHHHHHH---hCCCeEEEECCCccHHH---HHHHHHHHhhcCCCEEEEecccccccCC--CCCccccChhchhcCCCce
Confidence 45555443 34456677777888886 3456777888899999998653321111 1111112444556666555
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHhhcCC-CcEEEEEE
Q 017890 325 SIRVDGNDALAVYTAVQAAREMAISEK-RPVLVEVR 359 (364)
Q Consensus 325 ~~~VDGnD~~av~~a~~~A~~~ar~~~-~P~LIea~ 359 (364)
..+|+ +++++.+++.+|++.++.+. ||+.|++-
T Consensus 135 s~~v~--~~~~~~~~l~~A~~~A~~~~~GPV~l~iP 168 (566)
T PRK07282 135 NYQIR--ETADIPRIITEAVHIATTGRPGPVVIDLP 168 (566)
T ss_pred eEEcC--CHHHHHHHHHHHHHHHhcCCCCeEEEeCC
Confidence 66775 78889999999998888764 89999863
No 197
>PRK08366 vorA 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=90.96 E-value=2.4 Score=43.38 Aligned_cols=109 Identities=22% Similarity=0.224 Sum_probs=72.0
Q ss_pred chhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhc
Q 017890 242 QLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAY 321 (364)
Q Consensus 242 ~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~ 321 (364)
.+.+|+|+++| +.++++.+-=++++ -.+|.|.+|+-.++|+|+++.|-.-. ++..-.....|+. ..+--
T Consensus 61 A~~~aiGAs~a------GaRa~TaTSg~Gl~--lm~E~l~~aa~~~lPiVi~~~~R~~p--~~~~~~~~q~D~~-~~~d~ 129 (390)
T PRK08366 61 AMAACIGASAA------GARAFTATSAQGLA--LMHEMLHWAAGARLPIVMVDVNRAMA--PPWSVWDDQTDSL-AQRDT 129 (390)
T ss_pred HHHHHHHHHhh------CCCeEeeeCcccHH--HHhhHHHHHHhcCCCEEEEEeccCCC--CCCCCcchhhHHH-HHhhc
Confidence 46788899887 34566665555554 36899999999999988877655432 2222111112222 12223
Q ss_pred CeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeecc
Q 017890 322 GIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNFL 363 (364)
Q Consensus 322 G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R~ 363 (364)
||-++- ..|+.+.++.+..|.+.+.+-.-|++|-..++++
T Consensus 130 g~i~~~--~~~~QEa~d~t~~Af~lAE~~~~PViv~~Dg~~~ 169 (390)
T PRK08366 130 GWMQFY--AENNQEVYDGVLMAFKVAETVNLPAMVVESAFIL 169 (390)
T ss_pred CEEEEe--CCCHHHHHHHHHHHHHHHHHHCCCEEEEecCccc
Confidence 663333 3589999999999999998889999987766653
No 198
>PRK08617 acetolactate synthase; Reviewed
Probab=90.87 E-value=2.2 Score=45.11 Aligned_cols=105 Identities=20% Similarity=0.131 Sum_probs=67.0
Q ss_pred HHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhcCeE
Q 017890 245 QAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIR 324 (364)
Q Consensus 245 ~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~ 324 (364)
+|.|.|. ..++-.++++..|=|.++ .--++.-|..-+.|||+|.-......... ......|....++.+--.
T Consensus 57 ~A~gyar---~tg~~gv~~vt~GpG~~N---~l~gl~~A~~~~~PvlvisG~~~~~~~~~--~~~q~~d~~~l~~~~tk~ 128 (552)
T PRK08617 57 MAAAIGR---LTGKPGVVLVTSGPGVSN---LATGLVTATAEGDPVVAIGGQVKRADRLK--RTHQSMDNVALFRPITKY 128 (552)
T ss_pred HHHhHhh---hcCCCEEEEECCCCcHhH---hHHHHHHHhhcCCCEEEEecCCcccccCC--CCccccchhhhhhhhcce
Confidence 3444443 334445666666888886 34567778888999999985332211111 111122445566666556
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHhhcCC-CcEEEEEE
Q 017890 325 SIRVDGNDALAVYTAVQAAREMAISEK-RPVLVEVR 359 (364)
Q Consensus 325 ~~~VDGnD~~av~~a~~~A~~~ar~~~-~P~LIea~ 359 (364)
..+|+ +++++..++.+|++.+..+. ||+.|++-
T Consensus 129 ~~~v~--~~~~~~~~i~~A~~~a~~~~~GPV~l~iP 162 (552)
T PRK08617 129 SAEVQ--DPDNLSEVLANAFRAAESGRPGAAFVSLP 162 (552)
T ss_pred EEEeC--CHHHHHHHHHHHHHHHccCCCCcEEEeCh
Confidence 67775 78899999999998887764 79999864
No 199
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=90.57 E-value=2.3 Score=45.02 Aligned_cols=106 Identities=21% Similarity=0.236 Sum_probs=67.6
Q ss_pred hHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhcCe
Q 017890 244 PQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGI 323 (364)
Q Consensus 244 p~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~ 323 (364)
-+|-|.|.+ .++-.++++..|=|.++ .--++.-|..-+.|||+|.-.-...... .......|....++.+--
T Consensus 59 ~~Adgyar~---tg~~~v~~~t~GpG~~n---~~~gl~~A~~~~~Pvl~i~G~~~~~~~~--~~~~q~~d~~~~~~~itk 130 (561)
T PRK06048 59 HAADGYARA---TGKVGVCVATSGPGATN---LVTGIATAYMDSVPIVALTGQVPRSMIG--NDAFQEADITGITMPITK 130 (561)
T ss_pred HHHHHHHHH---hCCCeEEEECCCCcHHH---HHHHHHHHhhcCCCEEEEeccCCccccC--CCCccccchhhhccCcce
Confidence 345555543 34455677777888886 3456778888899999997432211110 111112345555555555
Q ss_pred EEEEEeCCCHHHHHHHHHHHHHHhhcC-CCcEEEEEE
Q 017890 324 RSIRVDGNDALAVYTAVQAAREMAISE-KRPVLVEVR 359 (364)
Q Consensus 324 ~~~~VDGnD~~av~~a~~~A~~~ar~~-~~P~LIea~ 359 (364)
...+|. +++++.+++++|++.++.. .||+.|++-
T Consensus 131 ~s~~v~--~~~~i~~~i~~A~~~A~~~~~GPV~l~iP 165 (561)
T PRK06048 131 HNYLVQ--DAKDLPRIIKEAFHIASTGRPGPVLIDLP 165 (561)
T ss_pred EEEEeC--CHHHHHHHHHHHHHHHhcCCCCeEEEecC
Confidence 566675 7888999999998888776 489999874
No 200
>PRK05858 hypothetical protein; Provisional
Probab=90.56 E-value=2.5 Score=44.59 Aligned_cols=105 Identities=20% Similarity=0.056 Sum_probs=66.9
Q ss_pred HHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhcCeE
Q 017890 245 QAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIR 324 (364)
Q Consensus 245 ~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~ 324 (364)
+|-|.|.+ .++-.++++..|=|.++ ..-++..|..-+.|||+|.-.-..........| ..|....++.+--.
T Consensus 57 ~AdGyar~---tg~~gv~~~t~GpG~~n---~~~~i~~A~~~~~Pvl~i~g~~~~~~~~~~~~q--~~d~~~l~~~~tk~ 128 (542)
T PRK05858 57 AAEAWAKL---TRVPGVAVLTAGPGVTN---GMSAMAAAQFNQSPLVVLGGRAPALRWGMGSLQ--EIDHVPFVAPVTKF 128 (542)
T ss_pred HHHHHHHh---cCCCeEEEEcCCchHHH---HHHHHHHHHhcCCCEEEEeCCCCcccCCCCCCc--ccchhhhhhhhhce
Confidence 45565544 34445556666777776 345677888899999999854332211111111 12445566666666
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHhhcC-CCcEEEEEE
Q 017890 325 SIRVDGNDALAVYTAVQAAREMAISE-KRPVLVEVR 359 (364)
Q Consensus 325 ~~~VDGnD~~av~~a~~~A~~~ar~~-~~P~LIea~ 359 (364)
..+|+ +++.+.+.+.+|+..+... .||+.|++-
T Consensus 129 ~~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~iP 162 (542)
T PRK05858 129 AATAQ--SAENAGRLVDQALQAAVTPHRGPVFVDFP 162 (542)
T ss_pred EEEeC--CHHHHHHHHHHHHHHHcCCCCCeEEEEcC
Confidence 77775 6888888888888877665 479999864
No 201
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=90.25 E-value=2.7 Score=44.62 Aligned_cols=105 Identities=21% Similarity=0.175 Sum_probs=66.9
Q ss_pred HHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhcCeE
Q 017890 245 QAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIR 324 (364)
Q Consensus 245 ~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~ 324 (364)
+|-|.|. ..++-.++++..|=|.++ .--++.-|...+.|||+|.-.-...... ...+...|....++.+--.
T Consensus 56 ~Adgyar---~tg~~gv~~~t~GpG~~n---~~~gla~A~~~~~Pvl~i~G~~~~~~~~--~~~~q~~d~~~~~~~~tk~ 127 (563)
T PRK08527 56 AADGYAR---ASGKVGVAIVTSGPGFTN---AVTGLATAYMDSIPLVLISGQVPNSLIG--TDAFQEIDAVGISRPCVKH 127 (563)
T ss_pred HHHHHHh---hhCCCEEEEECCCCcHHH---HHHHHHHHhhcCCCEEEEecCCCccccC--CCCCcccchhhhhhcccce
Confidence 4445443 334456677777888886 3456777888899999998532211100 1111112444455555555
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHhhcCC-CcEEEEEE
Q 017890 325 SIRVDGNDALAVYTAVQAAREMAISEK-RPVLVEVR 359 (364)
Q Consensus 325 ~~~VDGnD~~av~~a~~~A~~~ar~~~-~P~LIea~ 359 (364)
..+|+ +++++.+++++|++.++.+. ||+.|++-
T Consensus 128 s~~v~--~~~~i~~~l~~A~~~a~s~~~GPV~l~iP 161 (563)
T PRK08527 128 NYLVK--SIEELPRILKEAFYIARSGRPGPVHIDIP 161 (563)
T ss_pred EEEcC--CHHHHHHHHHHHHHHHhcCCCCcEEEEcC
Confidence 55664 79999999999998888765 79999864
No 202
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=90.01 E-value=2.6 Score=44.98 Aligned_cols=105 Identities=25% Similarity=0.256 Sum_probs=66.4
Q ss_pred HHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhcCeE
Q 017890 245 QAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIR 324 (364)
Q Consensus 245 ~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~ 324 (364)
+|.|.|.. .++-.++++..|=|.++ .--++.-|..-+.|||+|+-.-...... ...+...|....++.+--.
T Consensus 66 ~Adgyar~---tg~~gv~~~t~GPG~~N---~l~gl~~A~~~~~Pvl~I~G~~~~~~~~--~~~~q~~d~~~~~~~~tk~ 137 (585)
T CHL00099 66 AADGYARS---TGKVGVCFATSGPGATN---LVTGIATAQMDSVPLLVITGQVGRAFIG--TDAFQEVDIFGITLPIVKH 137 (585)
T ss_pred HHHHHHHh---cCCcEEEEECCCCcHHH---HHHHHHHHhhcCCCEEEEecCCCccccC--CCCccccchhhhhcCceeE
Confidence 34444433 34455667777888886 3456777888899999998543211100 0111122444555666555
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHhhcCC-CcEEEEEE
Q 017890 325 SIRVDGNDALAVYTAVQAAREMAISEK-RPVLVEVR 359 (364)
Q Consensus 325 ~~~VDGnD~~av~~a~~~A~~~ar~~~-~P~LIea~ 359 (364)
..+|+ +++++.+++++|++.++.+. ||+.|++-
T Consensus 138 ~~~v~--~~~~i~~~l~~A~~~A~~~~~GPV~l~iP 171 (585)
T CHL00099 138 SYVVR--DARDISRIVAEAFYIAKHGRPGPVLIDIP 171 (585)
T ss_pred EEEeC--CHHHHHHHHHHHHHHHccCCCCeEEEecC
Confidence 66776 78899999999988877654 79999864
No 203
>PLN02573 pyruvate decarboxylase
Probab=89.67 E-value=2.7 Score=44.93 Aligned_cols=106 Identities=17% Similarity=0.088 Sum_probs=65.2
Q ss_pred HHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccccc--cc-c---CCccHHHHH
Q 017890 245 QAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNIS--EQ-F---RSDGIVVKG 318 (364)
Q Consensus 245 ~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~--~~-~---~~~~ia~~a 318 (364)
+|-|.|.+ .+ -.++++..|=|+++ ..-++.-|..-+.|||+|+-.-......... .+ . ......+.+
T Consensus 69 mAdgyaR~---tg-~gv~~~t~GpG~~n---~~~gla~A~~d~~Pvl~I~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (578)
T PLN02573 69 AADGYARA---RG-VGACVVTFTVGGLS---VLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCF 141 (578)
T ss_pred HHHHHHHH---hC-CCeEEEecCccHHH---HHHHHHHHHHhCCCEEEEECCCChhhhhcCceeeeecCCCChHHHHHHh
Confidence 45555443 34 56777778888886 3356777888899999998643322111000 00 0 001112445
Q ss_pred hhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEE
Q 017890 319 RAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVR 359 (364)
Q Consensus 319 ~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~ 359 (364)
+.+--...+|. +++++.+.+++|+..|+...+|+.|++-
T Consensus 142 ~~itk~s~~v~--~~~~~~~~l~~A~~~A~~~~gPV~l~iP 180 (578)
T PLN02573 142 QTVTCYQAVIN--NLEDAHELIDTAISTALKESKPVYISVS 180 (578)
T ss_pred hceEEEEEEeC--CHHHHHHHHHHHHHHHHhcCCCEEEEee
Confidence 55555566665 6778888888888888778899999873
No 204
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=89.56 E-value=2 Score=45.71 Aligned_cols=107 Identities=18% Similarity=0.154 Sum_probs=68.1
Q ss_pred HHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCccccccc----c--cccCC-ccHHHH
Q 017890 245 QAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNI----S--EQFRS-DGIVVK 317 (364)
Q Consensus 245 ~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~----~--~~~~~-~~ia~~ 317 (364)
+|-|.|.. .++-.++++..|=|.++ ..-++..|..-+.|||+|+-.-........ . ..+.. .|....
T Consensus 65 ~Adgyar~---tgk~gv~~~t~GPG~~N---~~~gla~A~~d~~Pvl~I~G~~~~~~~~~~~~~~~~~~~~qe~~d~~~~ 138 (569)
T PRK08327 65 MAHGYALV---TGKPQAVMVHVDVGTAN---ALGGVHNAARSRIPVLVFAGRSPYTEEGELGSRNTRIHWTQEMRDQGGL 138 (569)
T ss_pred HHHHHHHh---hCCCeEEEEecCHHHHH---HHHHHHHHhhcCCCEEEEeccCCccccccccccccCcccchhhhhHHHH
Confidence 44555443 34445666667888876 446688888889999999875432211100 0 00111 245556
Q ss_pred HhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcC-CCcEEEEEE
Q 017890 318 GRAYGIRSIRVDGNDALAVYTAVQAAREMAISE-KRPVLVEVR 359 (364)
Q Consensus 318 a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~-~~P~LIea~ 359 (364)
++.+--...+|+ +++++..++.+|+..++.+ .||+.||+-
T Consensus 139 ~~~vtk~~~~v~--~~~~~~~~l~~A~~~a~~~~~GPV~i~iP 179 (569)
T PRK08327 139 VREYVKWDYEIR--RGDQIGEVVARAIQIAMSEPKGPVYLTLP 179 (569)
T ss_pred HhhhhhhhcccC--CHHHHHHHHHHHHHHHhcCCCCCEEEECc
Confidence 666555556676 6889999999999888775 589999864
No 205
>cd01460 vWA_midasin VWA_Midasin: Midasin is a member of the AAA ATPase family. The proteins of this family are unified by their common archetectural organization that is based upon a conserved ATPase domain. The AAA domain of midasin contains six tandem AAA protomers. The AAA domains in midasin is followed by a D/E rich domain that is following by a VWA domain. The members of this subgroup have a conserved MIDAS motif. The function of this domain is not exactly known although it has been speculated to play a crucial role in midasin function.
Probab=89.49 E-value=5.7 Score=38.69 Aligned_cols=84 Identities=19% Similarity=0.049 Sum_probs=57.8
Q ss_pred eEEEEeCCCc--cccccHHHHHHHHHHcCCCEEEEEEcCC-c--ccccccc--cccCCc-cHHHHHhhcCeEEEEEeCCC
Q 017890 261 CAVAYTGDGG--TSEGDFHAALNFAAVMEAPVVFICRNNG-W--AISTNIS--EQFRSD-GIVVKGRAYGIRSIRVDGND 332 (364)
Q Consensus 261 ~vv~~~GDGa--~~eG~~~EALn~Aa~~~LPvIfVV~NNg-~--ais~~~~--~~~~~~-~ia~~a~a~G~~~~~VDGnD 332 (364)
.++.++.||. .++|...+.+.-|...++-++||+.+|. - +|..... ...... .+......|++|.+.|- +|
T Consensus 166 qlilLISDG~~~~~e~~~~~~~r~a~e~~i~l~~I~ld~~~~~~SI~d~~~~~~~~~~~~~l~~Yl~~fpfpYy~~~-~~ 244 (266)
T cd01460 166 QLLLIISDGRGEFSEGAQKVRLREAREQNVFVVFIIIDNPDNKQSILDIKVVSFKNDKSGVITPYLDEFPFPYYVIV-RD 244 (266)
T ss_pred cEEEEEECCCcccCccHHHHHHHHHHHcCCeEEEEEEcCCCCCCCcccccccccCCCCccHHHHHHhcCCCCeEEEe-cC
Confidence 7999999999 8888877778888888996666655543 2 3321111 011111 45677889999998775 48
Q ss_pred HHHHHHHHHHHHH
Q 017890 333 ALAVYTAVQAARE 345 (364)
Q Consensus 333 ~~av~~a~~~A~~ 345 (364)
+.++-+++..++.
T Consensus 245 ~~~lp~~l~~~lr 257 (266)
T cd01460 245 LNQLPSVLSDALR 257 (266)
T ss_pred hhHhHHHHHHHHH
Confidence 9999988877753
No 206
>PRK09124 pyruvate dehydrogenase; Provisional
Probab=89.48 E-value=3.4 Score=43.87 Aligned_cols=104 Identities=15% Similarity=0.007 Sum_probs=61.6
Q ss_pred HHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhcCeE
Q 017890 245 QAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIR 324 (364)
Q Consensus 245 ~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~ 324 (364)
+|-|.|.+ .++-.++++..|=|.++ ..-++.-|..-++|+|+|.-+-....... ..+...+..+.++.+-..
T Consensus 56 ~Adgyar~---tg~~gv~~~t~GpG~~n---~~~gi~~A~~~~~Pvl~i~G~~~~~~~~~--~~~Q~~d~~~l~~~itk~ 127 (574)
T PRK09124 56 AAGAEAQL---TGELAVCAGSCGPGNLH---LINGLFDCHRNHVPVLAIAAHIPSSEIGS--GYFQETHPQELFRECSHY 127 (574)
T ss_pred HHHHHHHh---hCCcEEEEECCCCCHHH---HHHHHHHHhhcCCCEEEEecCCccccCCC--CCccccChhhhcccceee
Confidence 45555543 23333344445777765 23457778888999999986433211111 111112344455544445
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEE
Q 017890 325 SIRVDGNDALAVYTAVQAAREMAISEKRPVLVEV 358 (364)
Q Consensus 325 ~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea 358 (364)
..+|+ +++++.+.+++|+..|....+|+.|++
T Consensus 128 ~~~v~--~~~~~~~~i~~A~~~A~~~~gPV~l~i 159 (574)
T PRK09124 128 CELVS--NPEQLPRVLAIAMRKAILNRGVAVVVL 159 (574)
T ss_pred eEEeC--CHHHHHHHHHHHHHHHhcCCCCEEEEe
Confidence 55665 677888888888877777779999986
No 207
>PRK09627 oorA 2-oxoglutarate-acceptor oxidoreductase subunit OorA; Reviewed
Probab=89.45 E-value=2.4 Score=43.12 Aligned_cols=108 Identities=16% Similarity=0.141 Sum_probs=69.4
Q ss_pred chhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCC-cccccccccccCCccHHHHHhh
Q 017890 242 QLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNG-WAISTNISEQFRSDGIVVKGRA 320 (364)
Q Consensus 242 ~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg-~ais~~~~~~~~~~~ia~~a~a 320 (364)
.+.+|+|+++| +.++++.+-=++++ -.+|.+-+|+..++|+++++-+-+ =+...|+.-. ..+-...+..+
T Consensus 59 A~~~a~GAs~a------G~Ra~taTSg~G~~--lm~E~~~~a~~~e~P~V~~~~~R~GpstG~p~~~~-q~D~~~~~~~~ 129 (375)
T PRK09627 59 GISVALGASMS------GVKSMTASSGPGIS--LKAEQIGLGFIAEIPLVIVNVMRGGPSTGLPTRVA-QGDVNQAKNPT 129 (375)
T ss_pred HHHHHHHHHhh------CCCEEeecCCchHH--HHhhHHHHHHhccCCEEEEEeccCCCcCCCCCccc-hHHHHHHhcCC
Confidence 36778888887 23466665445554 257899999999999988776653 2222222110 01112223333
Q ss_pred ---cCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEe
Q 017890 321 ---YGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRL 360 (364)
Q Consensus 321 ---~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T 360 (364)
|+|- .+.-.|+.+.++.+.+|.+.+.+-.-|++|-..+
T Consensus 130 hgd~~~i--vl~p~~~qEa~d~t~~Af~lAE~~~~PViv~~D~ 170 (375)
T PRK09627 130 HGDFKSI--ALAPGSLEEAYTETVRAFNLAERFMTPVFLLLDE 170 (375)
T ss_pred CCCcCcE--EEeCCCHHHHHHHHHHHHHHHHHHcCceEEecch
Confidence 3443 4566689999999999999998888999886543
No 208
>TIGR03710 OAFO_sf 2-oxoacid:acceptor oxidoreductase, alpha subunit. The genes for this enzyme in Prevotella intermedia 17, Persephonella marina EX-H1 and Picrophilus torridus DSM 9790 are in close proximity to a variety of TCA cycle genes. Persephonella marina and P. torridus are believed to encode complete TCA cycles, and none of these contains the lipoate-based 2-oxoglutarate dehydrogenase (E1/E2/E3) system. That system is presumed to be replaced by this one. In fact, the lipoate system is absent in most organisms possessing a member of this family, providing additional circumstantial evidence that many of these enzymes are capable of acting as 2-oxoglutarate dehydrogenases and supporting flux through TCA cycles in either the forward or reverse directions.
Probab=89.33 E-value=2 Score=45.88 Aligned_cols=109 Identities=19% Similarity=0.212 Sum_probs=70.0
Q ss_pred chhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCccH-HHHHhh
Q 017890 242 QLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGI-VVKGRA 320 (364)
Q Consensus 242 ~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~~~~~~~i-a~~a~a 320 (364)
.+.+|+|+++|- .++++.+-=.+++ -.+|.|.+|+..++|+|+++-+..- .+++..-+....|+ ..+.-+
T Consensus 249 A~~~a~GAs~aG------~Ra~taTSg~Gl~--lm~E~l~~a~~~~~P~Vi~~~~R~g-pstg~~t~~eq~D~~~~~~~~ 319 (562)
T TIGR03710 249 AINMAIGASYAG------ARAMTATSGPGFA--LMTEALGLAGMTETPLVIVDVQRGG-PSTGLPTKTEQSDLLFALYGG 319 (562)
T ss_pred HHHHHHhHHhcC------CceeecCCCCChh--HhHHHHhHHHhccCCEEEEEcccCC-CCCCCCCCccHHHHHHHhcCC
Confidence 367788888872 3455555445554 3689999999999998777766542 22211111111222 222222
Q ss_pred ---cCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEee
Q 017890 321 ---YGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLN 361 (364)
Q Consensus 321 ---~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~ 361 (364)
++|.++ .-.|+.++++.+.+|.+.+.+-.-|++|-..++
T Consensus 320 hgd~~~ivl--~p~~~qEa~d~~~~Af~lAe~~~~PViv~~D~~ 361 (562)
T TIGR03710 320 HGEFPRIVL--APGSPEECFYLAIEAFNLAEKYQTPVIVLSDQY 361 (562)
T ss_pred CCCcCceEE--cCCCHHHHHHHHHHHHHHHHHhcCCEEEEechH
Confidence 345444 556899999999999999998899999866554
No 209
>cd07036 TPP_PYR_E1-PDHc-beta_like Pyrimidine (PYR) binding domain of the beta subunits of the E1 components of human pyruvate dehydrogenase complex (E1- PDHc) and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of the beta subunits of the E1 components of: human pyruvate dehydrogenase complex (E1- PDHc), the acetoin dehydrogenase complex (ADC), and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domain
Probab=88.99 E-value=3.7 Score=36.96 Aligned_cols=60 Identities=15% Similarity=0.133 Sum_probs=39.8
Q ss_pred CCCEEEEEEcCCcccccccccccCCccHHHHHhhc-CeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEE
Q 017890 287 EAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAY-GIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLV 356 (364)
Q Consensus 287 ~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~-G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LI 356 (364)
++||++++..-++....+++ ..+++ ...+++ |+.++.- -|..+...+++.+.+ .++|++|
T Consensus 103 ~~pv~i~~~~gg~~~~G~th---s~~~~-a~lr~iPg~~V~~P--sd~~e~~~~l~~~~~----~~~P~~~ 163 (167)
T cd07036 103 KVPIVIRGPNGGGIGGGAQH---SQSLE-AWFAHIPGLKVVAP--STPYDAKGLLKAAIR----DDDPVIF 163 (167)
T ss_pred cCCEEEEEeCCCCCCcChhh---hhhHH-HHHhcCCCCEEEee--CCHHHHHHHHHHHHh----CCCcEEE
Confidence 58999999776665444432 23344 334443 7766654 378889988988886 4689876
No 210
>PRK06154 hypothetical protein; Provisional
Probab=88.45 E-value=4 Score=43.44 Aligned_cols=91 Identities=14% Similarity=0.039 Sum_probs=59.2
Q ss_pred CeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhcCeEEEEEeCCCHHHHHHH
Q 017890 260 ACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTA 339 (364)
Q Consensus 260 ~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~~~~VDGnD~~av~~a 339 (364)
.++++..|=|.++ ..-++..|..-+.|||+|+-........ .. ..-+....++.+--...+|+ +++++.+.
T Consensus 83 gv~~~t~GPG~~N---~~~gla~A~~~~~Pvl~i~G~~~~~~~~--~~--~~~d~~~~~~~vtk~~~~v~--~~~~~~~~ 153 (565)
T PRK06154 83 GVFAVQYGPGAEN---AFGGVAQAYGDSVPVLFLPTGYPRGSTD--VA--PNFESLRNYRHITKWCEQVT--LPDEVPEL 153 (565)
T ss_pred EEEEECCCccHHH---HHHHHHHHhhcCCCEEEEeCCCCccccc--CC--CCcchhhhHhhcceeEEECC--CHHHHHHH
Confidence 3444556888876 3456778888899999998543321110 00 01123345555555566675 78899999
Q ss_pred HHHHHHHhhcC-CCcEEEEEE
Q 017890 340 VQAAREMAISE-KRPVLVEVR 359 (364)
Q Consensus 340 ~~~A~~~ar~~-~~P~LIea~ 359 (364)
+.+|++.|+.+ .||+.|++-
T Consensus 154 i~~A~~~A~s~~~GPV~l~iP 174 (565)
T PRK06154 154 MRRAFTRLRNGRPGPVVLELP 174 (565)
T ss_pred HHHHHHHHhcCCCceEEEecc
Confidence 99999888775 589999864
No 211
>PF02779 Transket_pyr: Transketolase, pyrimidine binding domain; InterPro: IPR005475 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 2BFF_B 2BEV_B 1OLS_B 1V16_B 2BFD_B 1V1M_B 2BFC_B 1X80_B 1X7W_B 1OLX_B ....
Probab=88.38 E-value=6.7 Score=35.19 Aligned_cols=106 Identities=14% Similarity=0.075 Sum_probs=59.7
Q ss_pred chhHHHHHHHHhhhccC-CCeEEEEeCCCccc-cccHHHHHH-HHHHcCCCEEEEEEcCCc--ccccccccccCCccHHH
Q 017890 242 QLPQAVGVAYSLKMEKK-DACAVAYTGDGGTS-EGDFHAALN-FAAVMEAPVVFICRNNGW--AISTNISEQFRSDGIVV 316 (364)
Q Consensus 242 ~lp~AvG~A~A~k~~~~-~~~vv~~~GDGa~~-eG~~~EALn-~Aa~~~LPvIfVV~NNg~--ais~~~~~~~~~~~ia~ 316 (364)
.+++|+|+|++ ++ ..+++..+++=... +-...+.+. ..+..++|+. |+..-++ +...+++ .+.++++-
T Consensus 60 ~vg~a~GlA~~----G~~~~~~~~~f~~F~~~~q~r~~~~~~~~~~~~~~~v~-v~~~~g~~~~~~G~tH--~s~~d~~~ 132 (178)
T PF02779_consen 60 MVGMAAGLALA----GGLRPPVESTFADFLTPAQIRAFDQIRNDMAYGQLPVP-VGTRAGLGYGGDGGTH--HSIEDEAI 132 (178)
T ss_dssp HHHHHHHHHHH----SSSEEEEEEEEGGGGGGGHHHHHHHHHHHHHHHTS-EE-EEEEESGGGSTTGTTT--SSSSHHHH
T ss_pred ccceeeeeeec----ccccceeEeeccccccccchhhhhhhhhhhhcccceec-ceeecCcccccccccc--cccccccc
Confidence 35667777765 32 33455555544330 023445554 6777889998 5554444 4444333 23344443
Q ss_pred HHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEE
Q 017890 317 KGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEV 358 (364)
Q Consensus 317 ~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea 358 (364)
...--|+.++.-- |+.++..+++.+++. +.++|++|-.
T Consensus 133 ~~~iPg~~v~~Ps--d~~e~~~~l~~a~~~--~~~~P~~ir~ 170 (178)
T PF02779_consen 133 LRSIPGMKVVVPS--DPAEAKGLLRAAIRR--ESDGPVYIRE 170 (178)
T ss_dssp HHTSTTEEEEE-S--SHHHHHHHHHHHHHS--SSSSEEEEEE
T ss_pred cccccccccccCC--CHHHHHHHHHHHHHh--CCCCeEEEEe
Confidence 3333488777543 788999999988862 2478998753
No 212
>PRK06546 pyruvate dehydrogenase; Provisional
Probab=88.33 E-value=4.3 Score=43.35 Aligned_cols=105 Identities=18% Similarity=0.013 Sum_probs=62.9
Q ss_pred HHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhcCeE
Q 017890 245 QAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIR 324 (364)
Q Consensus 245 ~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~ 324 (364)
+|-|.|.+ .++-.++++..|=|.++ ..-++..|..-+.|||+|.-.-....... ......+....++.+--.
T Consensus 56 mAdgyar~---tgk~~v~~v~~GpG~~N---~~~gl~~A~~~~~Pvl~I~G~~~~~~~~~--~~~Qe~d~~~l~~~~tk~ 127 (578)
T PRK06546 56 AAAAEAQL---TGKLAVCAGSCGPGNLH---LINGLYDAHRSGAPVLAIASHIPSAQIGS--GFFQETHPDRLFVECSGY 127 (578)
T ss_pred HHHhHHHh---hCCceEEEECCCCcHHH---HHHHHHHHHhcCCCEEEEeCCCCccccCC--CCccccChhhhcccceee
Confidence 44454443 23334555556777776 23457778888999999985322111100 011112333444444334
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEE
Q 017890 325 SIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVR 359 (364)
Q Consensus 325 ~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~ 359 (364)
..+|. +++++.+++.+|++.|....||+.|++-
T Consensus 128 ~~~v~--~~~~~~~~i~~A~~~A~~~~GPV~l~lP 160 (578)
T PRK06546 128 CEMVS--SAEQAPRVLHSAIQHAVAGGGVSVVTLP 160 (578)
T ss_pred EeEeC--CHHHHHHHHHHHHHHHhcCCCCEEEEcC
Confidence 55665 6888888899998888877799999864
No 213
>PRK08367 porA pyruvate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=87.42 E-value=5.3 Score=40.92 Aligned_cols=109 Identities=19% Similarity=0.208 Sum_probs=71.0
Q ss_pred chhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhc
Q 017890 242 QLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAY 321 (364)
Q Consensus 242 ~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~ 321 (364)
.+.+++|+++| +.++++.+-=.+++ -.+|.|.+|+-.++|+++++-|-..+. |..-.....|+- -.+..
T Consensus 62 A~~~~~GAs~a------GaRa~TaTS~~Gl~--lm~E~l~~aag~~lP~V~vv~~R~~~~--p~~i~~d~~D~~-~~rd~ 130 (394)
T PRK08367 62 AISACVGASAA------GVRTFTATASQGLA--LMHEVLFIAAGMRLPIVMAIGNRALSA--PINIWNDWQDTI-SQRDT 130 (394)
T ss_pred HHHHHHHHHhh------CCCeEeeeccchHH--HHhhHHHHHHHccCCEEEEECCCCCCC--CCCcCcchHHHH-hcccc
Confidence 46778888887 23455554434443 368999999999999999886654432 322111111221 22346
Q ss_pred CeEEEEEeCCCHHHHHHHHHHHHHHhhcCC--CcEEEEEEeecc
Q 017890 322 GIRSIRVDGNDALAVYTAVQAAREMAISEK--RPVLVEVRLNFL 363 (364)
Q Consensus 322 G~~~~~VDGnD~~av~~a~~~A~~~ar~~~--~P~LIea~T~R~ 363 (364)
||-.+-. .|+.+.++-+..|.+.+.+.+ -|+++-..+||+
T Consensus 131 g~~~~~a--~~~QEa~D~~~~Af~lAE~~~~~~Pviv~~Dgf~~ 172 (394)
T PRK08367 131 GWMQFYA--ENNQEALDLILIAFKVAEDERVLLPAMVGFDAFIL 172 (394)
T ss_pred CeEEEeC--CCHHHHHHHHHHHHHHHHHhCcCCCEEEEechhhh
Confidence 7766543 689999999999999888433 799998777654
No 214
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=87.38 E-value=4.9 Score=42.26 Aligned_cols=106 Identities=20% Similarity=0.103 Sum_probs=65.4
Q ss_pred HHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhcCeE
Q 017890 245 QAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIR 324 (364)
Q Consensus 245 ~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~ 324 (364)
+|.|.|.+ .++..++++..|=|.++ .--++..|..-+.|||+|+-.-.+.......-+ ...+..+.++.+--.
T Consensus 63 ~Adgyar~---tg~~~v~~vt~gpG~~N---~~~gia~A~~~~~Pvl~i~g~~~~~~~~~~~~~-~~~d~~~l~~~~tk~ 135 (530)
T PRK07092 63 MADGYAQA---TGNAAFVNLHSAAGVGN---AMGNLFTAFKNHTPLVITAGQQARSILPFEPFL-AAVQAAELPKPYVKW 135 (530)
T ss_pred HHHHHHHH---hCCceEEEeccCchHHH---HHHHHHHHhhcCCCEEEEecCCcccccCccchh-cccCHHHhhcccccc
Confidence 56666543 34555666667877774 445677888889999999864333211110000 112334445544434
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHhhcCC-CcEEEEEE
Q 017890 325 SIRVDGNDALAVYTAVQAAREMAISEK-RPVLVEVR 359 (364)
Q Consensus 325 ~~~VDGnD~~av~~a~~~A~~~ar~~~-~P~LIea~ 359 (364)
..+| .+++++.+.+.+|+..++... ||+.|++-
T Consensus 136 ~~~v--~~~~~~~~~i~~A~~~A~~~~~GPv~l~iP 169 (530)
T PRK07092 136 SIEP--ARAEDVPAAIARAYHIAMQPPRGPVFVSIP 169 (530)
T ss_pred eeec--CCHHHHHHHHHHHHHHHhcCCCCcEEEEcc
Confidence 4455 478888888999988887775 79999864
No 215
>KOG4166 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=87.27 E-value=4.1 Score=42.46 Aligned_cols=102 Identities=27% Similarity=0.303 Sum_probs=63.2
Q ss_pred HHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcC-CcccccccccccCCccHHHHHhhc-C
Q 017890 245 QAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNN-GWAISTNISEQFRSDGIVVKGRAY-G 322 (364)
Q Consensus 245 ~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NN-g~ais~~~~~~~~~~~ia~~a~a~-G 322 (364)
+|-|.|.+ .++..+|++..|-|+++- -.-+.-|-.-+.|+|++---= .-+|.+ +.+...++...-+++ -
T Consensus 144 aAegYaR~---sgKPGvvlvTSGPGATNv---vtp~ADAlaDg~PlVvftGQVptsaIGt---DAFQEadiVgisRScTK 214 (675)
T KOG4166|consen 144 AAEGYARS---SGKPGVVLVTSGPGATNV---VTPLADALADGVPLVVFTGQVPTSAIGT---DAFQEADIVGISRSCTK 214 (675)
T ss_pred hhhhhhhh---cCCCcEEEEecCCCcccc---cchhhHHhhcCCcEEEEecccchhhccc---chhccCCeeeeeeccce
Confidence 34565544 357789999999999972 233556666788987664210 112222 122223344333444 3
Q ss_pred eEEEEEeCCCHHHHHHHHHHHHHHhhcCC-CcEEEEE
Q 017890 323 IRSIRVDGNDALAVYTAVQAAREMAISEK-RPVLVEV 358 (364)
Q Consensus 323 ~~~~~VDGnD~~av~~a~~~A~~~ar~~~-~P~LIea 358 (364)
|.+.. .|++++-.-+.+|.+.|..++ +|+||++
T Consensus 215 wNvmV---kdVedlPrrI~EAFeiATSGRPGPVLVDl 248 (675)
T KOG4166|consen 215 WNVMV---KDVEDLPRRIEEAFEIATSGRPGPVLVDL 248 (675)
T ss_pred eheee---ecHHHhhHHHHHHhhhhccCCCCCeEeeC
Confidence 54443 379999999999999887765 7999985
No 216
>PRK09622 porA pyruvate flavodoxin oxidoreductase subunit alpha; Reviewed
Probab=87.22 E-value=4.9 Score=41.30 Aligned_cols=108 Identities=20% Similarity=0.188 Sum_probs=72.0
Q ss_pred chhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhc
Q 017890 242 QLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAY 321 (364)
Q Consensus 242 ~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~ 321 (364)
.+.+++|++++- .++++.+-=.+++ -.+|.|..|+-.++|+|+++-+-+.....++. ....|+.. ++.-
T Consensus 68 A~~~~~GAs~aG------aRa~TaTS~~Gl~--lm~E~l~~aa~~~~P~V~~~~~R~~~~~~~i~--~d~~D~~~-~r~~ 136 (407)
T PRK09622 68 AMSACVGAAAAG------GRVATATSSQGLA--LMVEVLYQASGMRLPIVLNLVNRALAAPLNVN--GDHSDMYL-SRDS 136 (407)
T ss_pred HHHHHHHHHhhC------cCEEeecCcchHH--HHhhHHHHHHHhhCCEEEEEeccccCCCcCCC--chHHHHHH-HhcC
Confidence 366788888872 3455555444444 36899999999999998888887753222221 11122322 2334
Q ss_pred CeEEEEEeCCCHHHHHHHHHHHHHHhhcC--CCcEEEEEEeec
Q 017890 322 GIRSIRVDGNDALAVYTAVQAAREMAISE--KRPVLVEVRLNF 362 (364)
Q Consensus 322 G~~~~~VDGnD~~av~~a~~~A~~~ar~~--~~P~LIea~T~R 362 (364)
||.++ .-.++.+.++.+..|.+.+.+- .-|++|-..+++
T Consensus 137 g~ivl--~p~s~QEa~d~~~~Af~lAE~~~~~~Pviv~~Dg~~ 177 (407)
T PRK09622 137 GWISL--CTCNPQEAYDFTLMAFKIAEDQKVRLPVIVNQDGFL 177 (407)
T ss_pred CeEEE--eCCCHHHHHHHHHHHHHHHHHhccCCCEEEEechhh
Confidence 55554 5568999999999999988776 789998776654
No 217
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase. 2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.
Probab=87.13 E-value=2.3 Score=43.55 Aligned_cols=107 Identities=15% Similarity=0.091 Sum_probs=61.1
Q ss_pred HHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhcCeE
Q 017890 245 QAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIR 324 (364)
Q Consensus 245 ~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~ 324 (364)
+|-|.|.+ .++-.++++..|=|.++ ..-++.-|..-+.|||+|+-.-....... ......+..+.++.+--.
T Consensus 53 mAdgyar~---tg~~gv~~~t~GpG~~N---~l~gl~~A~~~~~Pvl~i~g~~~~~~~~~--~~~q~~d~~~~~~~~tk~ 124 (432)
T TIGR00173 53 FALGLAKA---SGRPVAVVCTSGTAVAN---LLPAVIEASYSGVPLIVLTADRPPELRGC--GANQTIDQPGLFGSYVRW 124 (432)
T ss_pred HHHHHHhc---cCCCEEEEECCcchHhh---hhHHHHHhcccCCcEEEEeCCCCHHHhCC--CCCcccchhhHHhhccce
Confidence 45555543 34556677777888776 34567777788899999985432111100 011112444555555544
Q ss_pred EEEEeC-CC---HHHHHHHHHHHHHHhhcCC-CcEEEEEE
Q 017890 325 SIRVDG-ND---ALAVYTAVQAAREMAISEK-RPVLVEVR 359 (364)
Q Consensus 325 ~~~VDG-nD---~~av~~a~~~A~~~ar~~~-~P~LIea~ 359 (364)
..+|.- .+ +..+.+.+++|+..|..+. ||+.|++-
T Consensus 125 ~~~v~~~~~~~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP 164 (432)
T TIGR00173 125 SLDLPLPEADEPLAYLRSTVDRAVAQAQGPPPGPVHINVP 164 (432)
T ss_pred eeeCCCCCccccHHHHHHHHHHHHHHhhCCCCCCEEEeCC
Confidence 555542 11 1226666777776666644 89999864
No 218
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=87.02 E-value=3.8 Score=43.97 Aligned_cols=103 Identities=17% Similarity=0.090 Sum_probs=65.3
Q ss_pred hhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHc--CCCEEEEEEcCCcccccccccccCCccHHHHHhh
Q 017890 243 LPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVM--EAPVVFICRNNGWAISTNISEQFRSDGIVVKGRA 320 (364)
Q Consensus 243 lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~--~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a 320 (364)
+.+|+|+++| +.++++.+--.+++ -..|.|..++.. .+|+|+++.|..--.++ +...+|.. .++.
T Consensus 59 ~~~~~GAs~a------G~ra~t~ts~~Gl~--~~~e~l~~~~~~g~~~~iV~~~~~~~gp~~~----~~~q~d~~-~~~~ 125 (595)
T TIGR03336 59 VEVAAGAAWS------GLRAFCTMKHVGLN--VAADPLMTLAYTGVKGGLVVVVADDPSMHSS----QNEQDTRH-YAKF 125 (595)
T ss_pred HHHHHHHHhc------CcceEEEccCCchh--hhHHHhhhhhhhcCcCceEEEEccCCCCccc----hhhHhHHH-HHHh
Confidence 5578888886 23455555444443 245667666644 45787777765221221 21222322 3445
Q ss_pred cCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEe
Q 017890 321 YGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRL 360 (364)
Q Consensus 321 ~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T 360 (364)
.+|+++.. .|+.++++.+.+|.+.+++-+-|++|-..+
T Consensus 126 ~~~~vl~p--~~~qE~~d~~~~Af~lae~~~~PV~v~~d~ 163 (595)
T TIGR03336 126 AKIPCLEP--STPQEAKDMVKYAFELSEKFGLPVILRPTT 163 (595)
T ss_pred cCCeEECC--CCHHHHHHHHHHHHHHHHHHCCCEEEEEee
Confidence 68886644 479999999999999999999999987754
No 219
>TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP).
Probab=86.54 E-value=5.2 Score=43.33 Aligned_cols=101 Identities=13% Similarity=0.080 Sum_probs=59.1
Q ss_pred hhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHH-HHHHHHcCCCEEEEEEcCCcc-cccccccccCCccHHHHHhh
Q 017890 243 LPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAA-LNFAAVMEAPVVFICRNNGWA-ISTNISEQFRSDGIVVKGRA 320 (364)
Q Consensus 243 lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EA-Ln~Aa~~~LPvIfVV~NNg~a-is~~~~~~~~~~~ia~~a~a 320 (364)
++.|+|+|++ .-++++++ =+.|.+ -..+- .+-++..++||++++...|+. ...+++.+ ..+++-...-
T Consensus 365 vg~AaGlA~~-----G~~Pvv~~--~a~Fl~-ra~dQi~~~~a~~~lpV~i~~~~~G~~g~dG~tH~~--~~dia~lr~i 434 (617)
T TIGR00204 365 VTFAAGMAIE-----GYKPFVAI--YSTFLQ-RAYDQVVHDVCIQKLPVLFAIDRAGIVGADGETHQG--AFDISYLRCI 434 (617)
T ss_pred HHHHHHHHHC-----CCEEEEEe--cHHHHH-HHHHHHHHHHHhcCCCEEEEEECCCcCCCCCccccc--chHHHHHhcC
Confidence 3455555532 23444444 345544 33333 366788999999999888763 22333322 3444433333
Q ss_pred cCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEE
Q 017890 321 YGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEV 358 (364)
Q Consensus 321 ~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea 358 (364)
-|+.++.- -|+.+++.+++.|++. .++|++|-.
T Consensus 435 Pgl~V~~P--sd~~e~~~~l~~a~~~---~~~Pv~ir~ 467 (617)
T TIGR00204 435 PNMVIMAP--SDENELRQMLYTGYHY---DDGPIAVRY 467 (617)
T ss_pred CCcEEEee--CCHHHHHHHHHHHHhC---CCCCEEEEE
Confidence 46666654 3788899999888752 348988753
No 220
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=86.16 E-value=5.3 Score=41.86 Aligned_cols=97 Identities=22% Similarity=0.185 Sum_probs=58.2
Q ss_pred hhHHHHHHHHhhhccCCCeEEEEe-CCCccccccHHHHHHHHH--------HcCCCEEEEEEcCCcccccccccccCCcc
Q 017890 243 LPQAVGVAYSLKMEKKDACAVAYT-GDGGTSEGDFHAALNFAA--------VMEAPVVFICRNNGWAISTNISEQFRSDG 313 (364)
Q Consensus 243 lp~AvG~A~A~k~~~~~~~vv~~~-GDGa~~eG~~~EALn~Aa--------~~~LPvIfVV~NNg~ais~~~~~~~~~~~ 313 (364)
+++|+|+|++ .-++++.++ .+-... .+..-.|-++ .+++||+|+..|.+...... +.+.++
T Consensus 202 vg~AaGlA~~-----G~rPiv~~~~~~f~~r--a~dQI~n~~ak~~~~sgg~~~~pVv~~g~~G~~~~~G~---hhs~~d 271 (464)
T PRK11892 202 AGIGVGAAFA-----GLKPIVEFMTFNFAMQ--AIDQIINSAAKTLYMSGGQMGCPIVFRGPNGAAARVAA---QHSQDY 271 (464)
T ss_pred HHHHHHHHhC-----CCEEEEEEehHHHHHH--HHHHHHHHHhHHhhhcCCccCCCEEEEecCCCCCCCCC---ccccCH
Confidence 4566666653 234444443 222221 2334456677 78999999998887644333 333444
Q ss_pred HHHHHhh-cCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEE
Q 017890 314 IVVKGRA-YGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLV 356 (364)
Q Consensus 314 ia~~a~a-~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LI 356 (364)
++ ..+. -|+.++.- -|..+.+..++.|++ .++|++|
T Consensus 272 ~a-~~~~iPgl~V~~P--~d~~d~~~ll~~ai~----~~~Pv~i 308 (464)
T PRK11892 272 AA-WYSHIPGLKVVAP--YSAADAKGLLKAAIR----DPNPVIF 308 (464)
T ss_pred HH-HHhhCCCCEEEEe--CCHHHHHHHHHHHhh----CCCcEEE
Confidence 43 3333 37777653 378888888888875 4689986
No 221
>COG4032 Predicted thiamine-pyrophosphate-binding protein [General function prediction only]
Probab=85.24 E-value=2.6 Score=37.62 Aligned_cols=106 Identities=14% Similarity=0.160 Sum_probs=65.3
Q ss_pred cchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccccccccC-CccHHHHHh
Q 017890 241 TQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFR-SDGIVVKGR 319 (364)
Q Consensus 241 ~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~~~~-~~~ia~~a~ 319 (364)
.+++++.|+.+|-| +..+.+--- ++.. ++..--.+=.++++|++.++...|+-...- ..|.+ +.-+.+..+
T Consensus 53 eg~GIcAGa~lAGk-----k~ailmQns-GlGN-siNal~SL~~ty~iPl~ml~ShRG~~~E~i-~AQVpmGr~~~kiLe 124 (172)
T COG4032 53 EGVGICAGAYLAGK-----KPAILMQNS-GLGN-SINALASLYVTYKIPLLMLASHRGVLKEGI-EAQVPMGRALPKILE 124 (172)
T ss_pred cceeeehhhhhcCC-----CcEEEEecc-Ccch-HHHHHHHHHHHhccchhhhhhccchhhcCC-ccccccchhhHHHHh
Confidence 34567889888742 334433322 2211 122211223468899999888777632211 11222 234556778
Q ss_pred hcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEE
Q 017890 320 AYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLV 356 (364)
Q Consensus 320 a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LI 356 (364)
..+++.+++.+ +++-++.+..+...+-+..+|+.+
T Consensus 125 ~~~lpt~t~~~--p~Ea~~li~~~~~~a~~~s~pv~v 159 (172)
T COG4032 125 GLELPTYTIIG--PEEALPLIENAILDAFENSRPVAV 159 (172)
T ss_pred hcCCcccccCC--HHHHHHHHHHHHHHHHHcCCceEE
Confidence 89999999885 778788888888888888999865
No 222
>TIGR00232 tktlase_bact transketolase, bacterial and yeast. This model is designed to capture orthologs of bacterial transketolases. The group includes two from the yeast Saccharomyces cerevisiae but excludes dihydroxyactetone synthases (formaldehyde transketolases) from various yeasts and the even more distant mammalian transketolases. Among the family of thiamine diphosphate-dependent enzymes that includes transketolases, dihydroxyacetone synthases, pyruvate dehydrogenase E1-beta subunits, and deoxyxylulose-5-phosphate synthases, mammalian and bacterial transketolases seem not to be orthologous.
Probab=85.17 E-value=5.5 Score=43.42 Aligned_cols=80 Identities=16% Similarity=0.137 Sum_probs=53.4
Q ss_pred ccccccHHHHHHHHHHcCCCEEEEEEcCCcc--cccccccccCCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHh
Q 017890 270 GTSEGDFHAALNFAAVMEAPVVFICRNNGWA--ISTNISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMA 347 (364)
Q Consensus 270 a~~eG~~~EALn~Aa~~~LPvIfVV~NNg~a--is~~~~~~~~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~a 347 (364)
.|.+ -.++++..++..++||++|.-..+++ -.++++ .+.++++-.-.--|+.+++-- |..++..+++.|++
T Consensus 430 ~F~~-r~~~~ir~~a~~~lpV~~v~th~g~~~G~dG~TH--q~iedia~lr~iPn~~v~~Pa--D~~E~~~~~~~a~~-- 502 (653)
T TIGR00232 430 MFVD-YARPAIRLAALMKLPVIYVYTHDSIGVGEDGPTH--QPIEQLASLRAIPNLSVWRPC--DGNETAAAWKYALE-- 502 (653)
T ss_pred HHHH-HHHHHHHHHHhcCCCEEEEEeCCccCCCCCCccc--CCHHHHHHHhcCCCCEEEeeC--CHHHHHHHHHHHHh--
Confidence 4543 55778888999999999999877665 344544 233444433222367776643 78889999988874
Q ss_pred hcCCCcEEEE
Q 017890 348 ISEKRPVLVE 357 (364)
Q Consensus 348 r~~~~P~LIe 357 (364)
+.++|+.|-
T Consensus 503 -~~~gP~~ir 511 (653)
T TIGR00232 503 -SQDGPTALI 511 (653)
T ss_pred -cCCCcEEEE
Confidence 246898874
No 223
>COG0674 PorA Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit [Energy production and conversion]
Probab=84.94 E-value=6.2 Score=40.01 Aligned_cols=108 Identities=19% Similarity=0.211 Sum_probs=71.4
Q ss_pred cchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccc-cccccCCccHHHHHh
Q 017890 241 TQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTN-ISEQFRSDGIVVKGR 319 (364)
Q Consensus 241 ~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~-~~~~~~~~~ia~~a~ 319 (364)
..+.+++|+++|- .+..-...|.|-.- .+|++-+|+-..+|+++++-+........ +.. -..+-...+..
T Consensus 58 ~a~s~v~GA~~aG-----ar~~TaTSg~Gl~L---m~E~l~~a~~~~~P~Vi~~~~R~~ps~g~p~~~-dq~D~~~~r~~ 128 (365)
T COG0674 58 GAISAVIGASYAG-----ARAFTATSGQGLLL---MAEALGLAAGTETPLVIVVAQRPLPSTGLPIKG-DQSDLMAARDT 128 (365)
T ss_pred HHHHHHHHHHhhC-----cceEeecCCccHHH---HHHHHHHHHhccCCeEEEEeccCcCCCcccccc-cHHHHHHHHcc
Confidence 4577889998873 23444455655554 68999999999999999988887543322 111 11121222222
Q ss_pred hcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEee
Q 017890 320 AYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLN 361 (364)
Q Consensus 320 a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~ 361 (364)
||+.+-.. |+.+.++..-.|.+.|.+..-|+++-..-+
T Consensus 129 --g~~~~~~~--s~qEa~d~t~~Af~iAe~~~~Pvi~~~D~~ 166 (365)
T COG0674 129 --GFPILVSA--SVQEAFDLTLLAFNIAEKVLTPVIVLLDGF 166 (365)
T ss_pred --CceEEeec--cHHHHHHHHHHHHHHHHHhcCCEEEeeccc
Confidence 88877666 788888888888888887788988754433
No 224
>PTZ00089 transketolase; Provisional
Probab=84.65 E-value=5.7 Score=43.35 Aligned_cols=101 Identities=15% Similarity=0.107 Sum_probs=62.7
Q ss_pred hHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCccc--ccccccccCCccHHHHHhhc
Q 017890 244 PQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAI--STNISEQFRSDGIVVKGRAY 321 (364)
Q Consensus 244 p~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ai--s~~~~~~~~~~~ia~~a~a~ 321 (364)
.+|.|+|. .+.-+++++.+. .|.+ -.++.+..++..++||+|++...+.+. .++++. ..++++-.-.--
T Consensus 417 ~~AaGlA~----~~G~~P~~~tf~--~Fl~-Ra~dqir~~al~~lpV~~v~thdg~~~g~DG~THq--~iedia~lR~iP 487 (661)
T PTZ00089 417 AIMNGIAA----HGGFIPFGATFL--NFYG-YALGAVRLAALSHHPVIYVATHDSIGLGEDGPTHQ--PVETLALLRATP 487 (661)
T ss_pred HHHHHHHH----cCCCeEEEEehH--HHHH-HHHHHHHHHHhcCCCeEEEEeCCceecCCCCCCcc--cHHHHHHHhcCC
Confidence 45555554 122245555553 6665 677889999999999999997777553 344432 223443221112
Q ss_pred CeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEE
Q 017890 322 GIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEV 358 (364)
Q Consensus 322 G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea 358 (364)
++.+++- -|..++..+++.|++ ..++|+.|-.
T Consensus 488 n~~V~~P--aD~~E~~~~l~~al~---~~~gP~~irl 519 (661)
T PTZ00089 488 NLLVIRP--ADGTETSGAYALALA---NAKTPTILCL 519 (661)
T ss_pred CcEEEec--CCHHHHHHHHHHHHH---cCCCCEEEEe
Confidence 5555543 378889888888874 2468988754
No 225
>PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=84.30 E-value=6.1 Score=43.01 Aligned_cols=101 Identities=14% Similarity=0.098 Sum_probs=60.6
Q ss_pred hhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHH-HHHHHcCCCEEEEEEcCCcc-cccccccccCCccHHHHHhh
Q 017890 243 LPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAAL-NFAAVMEAPVVFICRNNGWA-ISTNISEQFRSDGIVVKGRA 320 (364)
Q Consensus 243 lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EAL-n~Aa~~~LPvIfVV~NNg~a-is~~~~~~~~~~~ia~~a~a 320 (364)
+++|.|+|++ .-++++..+. .|.+ ...+.+ +.++..++||+++++..|+. ..++++.+ ..+++-...-
T Consensus 374 vg~AaGlA~~-----G~~P~v~~f~--~Fl~-ra~dQI~~~~a~~~lpv~~v~~~~G~~g~dG~THq~--~~dia~lr~i 443 (641)
T PRK12571 374 VTFAAGLAAA-----GLKPFCAVYS--TFLQ-RGYDQLLHDVALQNLPVRFVLDRAGLVGADGATHAG--AFDLAFLTNL 443 (641)
T ss_pred HHHHHHHHHC-----CCEEEEEehH--HHHH-HHHHHHHHHHhhcCCCeEEEEECCCcCCCCCccccc--cHHHHHHhcC
Confidence 3455555542 2345555544 4544 345555 66888999999999777753 23344332 2344433333
Q ss_pred cCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEE
Q 017890 321 YGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEV 358 (364)
Q Consensus 321 ~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea 358 (364)
-|+.++.- -|..+++.+++.|++. .++|++|-.
T Consensus 444 Pnl~V~~P--sd~~e~~~~l~~a~~~---~~~P~~ir~ 476 (641)
T PRK12571 444 PNMTVMAP--RDEAELRHMLRTAAAH---DDGPIAVRF 476 (641)
T ss_pred CCCEEEee--CCHHHHHHHHHHHHhC---CCCcEEEEE
Confidence 46766653 3788899999888752 368998753
No 226
>PRK05899 transketolase; Reviewed
Probab=82.52 E-value=9.6 Score=41.19 Aligned_cols=102 Identities=19% Similarity=0.119 Sum_probs=62.8
Q ss_pred hhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCccc--ccccccccCCccHHHHHhh
Q 017890 243 LPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAI--STNISEQFRSDGIVVKGRA 320 (364)
Q Consensus 243 lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ai--s~~~~~~~~~~~ia~~a~a 320 (364)
+++|.|+|+. +.-+++++.+ ..|. .-.++++.+++..++||+++....++.. .++++ | ..++++-...-
T Consensus 380 vg~A~GlA~~----G~~~pv~~t~--~~F~-~r~~~qir~~~~~~~pv~~v~~~~G~~~g~~G~tH-q-~~edia~~r~i 450 (624)
T PRK05899 380 AAIANGLALH----GGFIPFGGTF--LVFS-DYARNAIRLAALMKLPVIYVFTHDSIGVGEDGPTH-Q-PVEQLASLRAI 450 (624)
T ss_pred HHHHHHHHHc----CCCeEEEEEc--HHHH-HHHHHHHHHHHhcCCCEEEEEECCCcCcCCCCCCc-c-cHHHHHHHHhC
Confidence 3455555532 3233444433 2443 4577888888889999999998888643 45555 2 23344433333
Q ss_pred cCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEE
Q 017890 321 YGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEV 358 (364)
Q Consensus 321 ~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea 358 (364)
-|+.++.- -|..++..+++.+++. .++|++|-.
T Consensus 451 P~~~V~~P--~d~~e~~~~l~~a~~~---~~~P~~ir~ 483 (624)
T PRK05899 451 PNLTVIRP--ADANETAAAWKYALER---KDGPSALVL 483 (624)
T ss_pred CCcEEEeC--CCHHHHHHHHHHHHHc---CCCCEEEEE
Confidence 46666653 3788899999888862 368988754
No 227
>PLN02683 pyruvate dehydrogenase E1 component subunit beta
Probab=82.19 E-value=12 Score=37.69 Aligned_cols=99 Identities=19% Similarity=0.103 Sum_probs=55.9
Q ss_pred chhHHHHHHHHhhhccCCCeEEEEe-CCCccccccHHHHHHHHHHcC--------CCEEEEEEcCCcccccccccccCCc
Q 017890 242 QLPQAVGVAYSLKMEKKDACAVAYT-GDGGTSEGDFHAALNFAAVME--------APVVFICRNNGWAISTNISEQFRSD 312 (364)
Q Consensus 242 ~lp~AvG~A~A~k~~~~~~~vv~~~-GDGa~~eG~~~EALn~Aa~~~--------LPvIfVV~NNg~ais~~~~~~~~~~ 312 (364)
.++.|+|+|++ | .++++++. .|=. +=.+..-.+-++.++ +||++++.+....-..+++.+.
T Consensus 86 ~vg~AaGlA~~----G-~~P~v~~~~~~f~--~ra~dQi~~dva~~~~~~~g~~~~pV~i~~~~G~~~g~G~tH~~~--- 155 (356)
T PLN02683 86 FTGIGVGAAYA----G-LKPVVEFMTFNFS--MQAIDHIINSAAKTNYMSAGQISVPIVFRGPNGAAAGVGAQHSQC--- 155 (356)
T ss_pred HHHHHHHHHHC----C-CEEEEEEehhhHH--HHHHHHHHHHHHHhccccCCCccCCEEEEEeCCCCCCCCCccccC---
Confidence 34566666653 2 24444443 2222 111233346666665 8999998874322234444222
Q ss_pred cHHHHHhhc-CeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEE
Q 017890 313 GIVVKGRAY-GIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVE 357 (364)
Q Consensus 313 ~ia~~a~a~-G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIe 357 (364)
.+ ...++. |+.++.-- |..+++.+++.|.+ .++|+.|-
T Consensus 156 ~~-a~lr~iPnl~V~~Pa--d~~e~~~~l~~a~~----~~gPv~ir 194 (356)
T PLN02683 156 FA-AWYSSVPGLKVLAPY--SSEDARGLLKAAIR----DPDPVVFL 194 (356)
T ss_pred HH-HHHhcCCCCEEEEeC--CHHHHHHHHHHHHh----CCCcEEEE
Confidence 23 344443 77777643 78889998988875 46899884
No 228
>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=81.80 E-value=9.1 Score=41.15 Aligned_cols=102 Identities=12% Similarity=0.057 Sum_probs=59.4
Q ss_pred hhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhcC
Q 017890 243 LPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYG 322 (364)
Q Consensus 243 lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G 322 (364)
++.|.|+|+ .+ -+++++.+.+ |.+-.+..-.+-++..++||+|++...++.-.++++.. ..|++-...--|
T Consensus 333 v~~AaGlA~----~G-~~Pvv~~fs~--Fl~ra~dQi~~d~a~~~lpv~~~~~~~g~~~dG~TH~~--~~Dia~lr~iPn 403 (581)
T PRK12315 333 VAFASGIAA----NG-ARPVIFVNST--FLQRAYDQLSHDLAINNNPAVMIVFGGSISGNDVTHLG--IFDIPMISNIPN 403 (581)
T ss_pred HHHHHHHHH----Cc-CeEEEEeeHH--HHHHHHHHHHHHHHhcCCCEEEEEECCcccCCCccccc--cHHHHHHhcCCC
Confidence 344555543 23 3555555544 32222222345567889999999997776545555432 234443332236
Q ss_pred eEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEE
Q 017890 323 IRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEV 358 (364)
Q Consensus 323 ~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea 358 (364)
+.++.= -|..++..+++.|++. .++|+.|-.
T Consensus 404 l~V~~P--~d~~e~~~~l~~a~~~---~~gP~~ir~ 434 (581)
T PRK12315 404 LVYLAP--TTKEELIAMLEWALTQ---HEHPVAIRV 434 (581)
T ss_pred CEEEec--CCHHHHHHHHHHHHhC---CCCcEEEEE
Confidence 666542 3788888889888752 368998753
No 229
>PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=81.52 E-value=10 Score=40.55 Aligned_cols=101 Identities=13% Similarity=0.067 Sum_probs=60.3
Q ss_pred hhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHH-HHHHHHHcCCCEEEEEEcCCccc-ccccccccCCccHHHHHhh
Q 017890 243 LPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHA-ALNFAAVMEAPVVFICRNNGWAI-STNISEQFRSDGIVVKGRA 320 (364)
Q Consensus 243 lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~E-ALn~Aa~~~LPvIfVV~NNg~ai-s~~~~~~~~~~~ia~~a~a 320 (364)
+++|.|+|+. + -++++..+ ..|.. ...+ -.+.++..++||++++...++.. ..+++. ..++++-...-
T Consensus 334 vg~A~GlA~~----G-~~p~~~~f--~~F~~-ra~dQi~~~~a~~~~pv~~v~~~~G~~g~dG~tH~--~~edia~lr~i 403 (580)
T PRK05444 334 VTFAAGLATE----G-LKPVVAIY--STFLQ-RAYDQVIHDVALQNLPVTFAIDRAGLVGADGPTHQ--GAFDLSYLRCI 403 (580)
T ss_pred HHHHHHHHHC----C-CeeEEEee--HHHHH-HHHHHHHHHhhhcCCCEEEEEeCCCcCCCCCcccc--ccHHHHHHhcC
Confidence 3455566552 2 34444444 34543 3444 45557889999999998776532 233332 23445443333
Q ss_pred cCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEE
Q 017890 321 YGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEV 358 (364)
Q Consensus 321 ~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea 358 (364)
-|+.++.- -|+.++..+++.|++. .++|++|-.
T Consensus 404 P~l~V~~P--sd~~e~~~~l~~a~~~---~~~P~~ir~ 436 (580)
T PRK05444 404 PNMVIMAP--SDENELRQMLYTALAY---DDGPIAIRY 436 (580)
T ss_pred CCCEEEee--CCHHHHHHHHHHHHhC---CCCcEEEEe
Confidence 47777764 3788999999988862 368988743
No 230
>PLN02790 transketolase
Probab=79.11 E-value=11 Score=41.17 Aligned_cols=77 Identities=18% Similarity=0.245 Sum_probs=49.5
Q ss_pred cHHHHHHHHHHcCCCEEEEEEcCCccc--ccccccccCCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCC
Q 017890 275 DFHAALNFAAVMEAPVVFICRNNGWAI--STNISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKR 352 (364)
Q Consensus 275 ~~~EALn~Aa~~~LPvIfVV~NNg~ai--s~~~~~~~~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~ 352 (364)
...+++..++..++||+||+...+.+. +++++. ..++++-.-.--++.+++- -|..++..+++.|++. .++
T Consensus 431 ~~~~~ir~~al~~lpV~~v~thdg~~~G~DG~THq--~iedla~lR~iPnl~V~~P--aD~~E~~~~l~~al~~---~~g 503 (654)
T PLN02790 431 YMRAAMRLSALSEAGVIYVMTHDSIGLGEDGPTHQ--PIEHLASLRAMPNILMLRP--ADGNETAGAYKVAVTN---RKR 503 (654)
T ss_pred HHHHHHHHHHhcCCCeEEEEECCceeecCCCCCcc--cHHHHHHhcCCCCcEEEeC--CCHHHHHHHHHHHHHc---CCC
Confidence 356788888999999999997777653 344432 2233433222235555543 3778888888888752 468
Q ss_pred cEEEEE
Q 017890 353 PVLVEV 358 (364)
Q Consensus 353 P~LIea 358 (364)
|+.|-.
T Consensus 504 P~~irl 509 (654)
T PLN02790 504 PTVLAL 509 (654)
T ss_pred CEEEEe
Confidence 988753
No 231
>PLN02582 1-deoxy-D-xylulose-5-phosphate synthase
Probab=78.88 E-value=15 Score=40.50 Aligned_cols=91 Identities=11% Similarity=0.087 Sum_probs=54.4
Q ss_pred CCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCccc-ccccccccCCccHHHHHhhcCeEEEEEeCCCHHHHH
Q 017890 259 DACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAI-STNISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVY 337 (364)
Q Consensus 259 ~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ai-s~~~~~~~~~~~ia~~a~a~G~~~~~VDGnD~~av~ 337 (364)
-+++++++. .|.+=.+-.-++-++..++||+|++...++.. .++++.+ ..|++-...--|+.++.- -|..+++
T Consensus 422 ~kPvv~~fs--~Fl~RA~DQI~~dval~~lpVv~v~~~aG~vg~dG~TH~~--~~Dia~lr~iPnl~V~~P--sd~~E~~ 495 (677)
T PLN02582 422 LKPFCAIYS--SFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCG--AFDVTYMACLPNMVVMAP--SDEAELF 495 (677)
T ss_pred CeEEEEecH--HHHHHHHHHHHHHHHhcCCCEEEEEECCCcccCCCCcccc--cHHHHHHhcCCCCEEEee--CCHHHHH
Confidence 455666554 44332233345677889999999999777632 2343322 233432222236666653 3788888
Q ss_pred HHHHHHHHHhhcCCCcEEEEE
Q 017890 338 TAVQAAREMAISEKRPVLVEV 358 (364)
Q Consensus 338 ~a~~~A~~~ar~~~~P~LIea 358 (364)
.+++.|.+. .++|++|..
T Consensus 496 ~~l~~al~~---~~gPv~IR~ 513 (677)
T PLN02582 496 HMVATAAAI---DDRPSCFRY 513 (677)
T ss_pred HHHHHHHhC---CCCCEEEEE
Confidence 889888752 358998853
No 232
>PLN02234 1-deoxy-D-xylulose-5-phosphate synthase
Probab=78.75 E-value=13 Score=40.68 Aligned_cols=89 Identities=10% Similarity=0.118 Sum_probs=51.1
Q ss_pred CeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcc-cccccccccCCccHHHHHhhcCeEEEEEeCCCHHHHHH
Q 017890 260 ACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWA-ISTNISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYT 338 (364)
Q Consensus 260 ~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~a-is~~~~~~~~~~~ia~~a~a~G~~~~~VDGnD~~av~~ 338 (364)
+++++++ +.|.+-.+.+-.+.++..++||+|+++..|+. ..++++.+ ..+++-...--|+.++.- -|+.+++.
T Consensus 424 rPvv~~f--s~Fl~RA~DQI~~dva~~~lpV~~v~~~aG~~g~dG~TH~~--~~Dia~lr~iPnl~V~~P--sd~~E~~~ 497 (641)
T PLN02234 424 KPFCTIY--SSFMQRAYDQVVHDVDLQKLPVRFAIDRAGLMGADGPTHCG--AFDVTFMACLPNMIVMAP--SDEAELFN 497 (641)
T ss_pred eEEEEeh--HHHHHHHHHHHHHHHhhcCCCEEEEEeCCccCCCCCccccc--cHHHHHHhcCCCCEEEee--CCHHHHHH
Confidence 4455544 33433222233356678999999999887753 23344322 233332222236666654 37888888
Q ss_pred HHHHHHHHhhcCCCcEEEE
Q 017890 339 AVQAAREMAISEKRPVLVE 357 (364)
Q Consensus 339 a~~~A~~~ar~~~~P~LIe 357 (364)
+++.|... .++|++|-
T Consensus 498 ~l~~a~~~---~~~Pv~ir 513 (641)
T PLN02234 498 MVATAAAI---DDRPSCFR 513 (641)
T ss_pred HHHHHHhC---CCCCEEEE
Confidence 88887652 45898773
No 233
>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria.
Probab=78.10 E-value=17 Score=38.40 Aligned_cols=105 Identities=15% Similarity=0.110 Sum_probs=55.7
Q ss_pred hHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccc-c--cccccc---CCccHHHH
Q 017890 244 PQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAIS-T--NISEQF---RSDGIVVK 317 (364)
Q Consensus 244 p~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais-~--~~~~~~---~~~~ia~~ 317 (364)
-+|-|.|.+. + ..++++..|=|+++ .--++..|..-+.|||+|+-.-...-. . ..+... ...++.+.
T Consensus 53 ~mAdgyar~t---g-~gv~~~t~GPG~~n---~~~gla~A~~d~~Pvl~I~G~~~~~~~~~~~~~~~~~~~~~~q~~~~~ 125 (539)
T TIGR03393 53 YAADGYARCK---G-AAALLTTFGVGELS---AINGIAGSYAEHLPVIHIVGAPGTAAQQRGELLHHTLGDGDFRHFYRM 125 (539)
T ss_pred HHhhhhhhhc---C-ceEEEEecCccHHH---HhhHHHHHhhccCCEEEEECCCCcchhhcCceeeeecCCCchHHHHHH
Confidence 3455655443 3 35666777988886 234577788889999999853322100 0 000000 01122233
Q ss_pred HhhcCeEEEEEeCCC-HHHHHHHHHHHHHHhhcCCCcEEEEEE
Q 017890 318 GRAYGIRSIRVDGND-ALAVYTAVQAAREMAISEKRPVLVEVR 359 (364)
Q Consensus 318 a~a~G~~~~~VDGnD-~~av~~a~~~A~~~ar~~~~P~LIea~ 359 (364)
++..--....++-.+ +..+.+|++.|+. ..+|+.|++-
T Consensus 126 ~~~itk~~~~~~~~~~~~~i~~a~~~A~~----~~gPv~l~iP 164 (539)
T TIGR03393 126 AAEVTVAQAVLTEQNATAEIDRVITTALR----ERRPGYLMLP 164 (539)
T ss_pred hhceEEEEEEeChhhhHHHHHHHHHHHHh----cCCCEEEEec
Confidence 333322223333334 5666666666664 5689999874
No 234
>PRK12753 transketolase; Reviewed
Probab=77.97 E-value=13 Score=40.80 Aligned_cols=102 Identities=16% Similarity=0.058 Sum_probs=63.3
Q ss_pred hhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCccc--ccccccccCCccHHHHHhh
Q 017890 243 LPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAI--STNISEQFRSDGIVVKGRA 320 (364)
Q Consensus 243 lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ai--s~~~~~~~~~~~ia~~a~a 320 (364)
..+|.|+|+ .+.-.++++.+. .|.+ -.++++..++..++||++|.-..+++. .++++. +.++++-.-.-
T Consensus 415 v~~aaGlA~----~~G~~P~~~tf~--~F~~-r~~~qir~~a~~~l~V~~v~thdg~~~G~DG~THq--~iedla~lR~i 485 (663)
T PRK12753 415 TAIANGIAH----HGGFVPYTATFL--MFVE-YARNAARMAALMKARQIMVYTHDSIGLGEDGPTHQ--PVEQLASLRLT 485 (663)
T ss_pred HHHHHHHHH----hCCCeEEEEehH--HHHH-HHHHHHHHHHhcCCCeEEEEeCCCcccCCCCcccc--cHHHHHHHhcC
Confidence 355556654 122234444443 5655 678889999999999999988888755 334432 23444332222
Q ss_pred cCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEE
Q 017890 321 YGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEV 358 (364)
Q Consensus 321 ~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea 358 (364)
-++.+++-- |..++..+++.|++. .++|+.|-.
T Consensus 486 Pn~~v~~Pa--D~~E~~~~~~~al~~---~~gP~~irl 518 (663)
T PRK12753 486 PNFSTWRPC--DQVEAAVAWKLAIER---HNGPTALIL 518 (663)
T ss_pred CCCEEEccC--CHHHHHHHHHHHHhc---CCCCEEEEe
Confidence 366666532 678888888888752 368987754
No 235
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=77.50 E-value=8.4 Score=46.46 Aligned_cols=106 Identities=17% Similarity=0.126 Sum_probs=64.6
Q ss_pred hHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhcCe
Q 017890 244 PQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGI 323 (364)
Q Consensus 244 p~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~ 323 (364)
-+|.|.|.+ .++-.+++|..|=|.++ ..-++.-|..-+.|+|+|+-+-.........-| ..|....++.+--
T Consensus 353 fmAdGyAR~---TgkpgV~i~TsGPG~tN---~l~av~eA~~d~vPlLvItgd~p~~~~~~ga~Q--~iDq~~lf~pvtK 424 (1655)
T PLN02980 353 FHALGYARG---SLKPAVVITSSGTAVSN---LLPAVVEASQDFVPLLLLTADRPPELQDAGANQ--AINQVNHFGSFVR 424 (1655)
T ss_pred HHHHHHHHH---hCCCEEEEEeCcHHHHH---HHHHHHHHhhcCCCEEEEeCCCCHHHhcCCCCc--ccchhhHHHhhhh
Confidence 356666654 34556667777877776 567788888899999999866443211111111 1244455555544
Q ss_pred EEEEEeCCCHHH------HHHHHHHHHHHhhcCC-CcEEEEEE
Q 017890 324 RSIRVDGNDALA------VYTAVQAAREMAISEK-RPVLVEVR 359 (364)
Q Consensus 324 ~~~~VDGnD~~a------v~~a~~~A~~~ar~~~-~P~LIea~ 359 (364)
...+|. ++++ +..++++|+..++.+. ||+.|++-
T Consensus 425 ~s~~v~--~p~~~~~~~~l~~~v~~A~~~A~s~rpGPVhL~iP 465 (1655)
T PLN02980 425 FFFNLP--PPTDLIPARMVLTTLDSAVHWATSSPCGPVHINCP 465 (1655)
T ss_pred eeecCC--CccchhhHHHHHHHHHHHHHHHhCCCCCCEEEECc
Confidence 455553 3333 3466777777776664 89999975
No 236
>PLN02225 1-deoxy-D-xylulose-5-phosphate synthase
Probab=75.81 E-value=23 Score=39.17 Aligned_cols=91 Identities=11% Similarity=0.046 Sum_probs=54.7
Q ss_pred CCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCccc-ccccccccCCccHHHHHhhcCeEEEEEeCCCHHHHH
Q 017890 259 DACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAI-STNISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVY 337 (364)
Q Consensus 259 ~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ai-s~~~~~~~~~~~ia~~a~a~G~~~~~VDGnD~~av~ 337 (364)
-++++++.. .|.+=.+..-.+-++..++||+|+++.-|+.. .++++. ...|++-...--|+.++.- -|..+++
T Consensus 447 ~kPvv~iys--tFlqRAyDQI~~Dval~~lpV~~vid~aGlvg~DG~TH~--g~~Dia~lr~IPnm~V~aP--sD~~El~ 520 (701)
T PLN02225 447 LKPFCIIPS--AFLQRAYDQVVHDVDRQRKAVRFVITSAGLVGSDGPVQC--GAFDIAFMSSLPNMIAMAP--ADEDELV 520 (701)
T ss_pred CEEEEEeeh--hHHHHHHHHHHHHHHhhcCCceEEEECCccCCCCCcccc--ccHHHHHHhcCCCCEEEee--CCHHHHH
Confidence 456767663 56442233344557888999999998766532 233332 2334443333336666543 3788899
Q ss_pred HHHHHHHHHhhcCCCcEEEEE
Q 017890 338 TAVQAAREMAISEKRPVLVEV 358 (364)
Q Consensus 338 ~a~~~A~~~ar~~~~P~LIea 358 (364)
..++.|.. ..++|+.|-.
T Consensus 521 ~mL~~A~~---~~~gPv~IR~ 538 (701)
T PLN02225 521 NMVATAAY---VTDRPVCFRF 538 (701)
T ss_pred HHHHHHHh---cCCCCEEEEe
Confidence 98888764 2468998743
No 237
>PTZ00182 3-methyl-2-oxobutanate dehydrogenase; Provisional
Probab=75.18 E-value=27 Score=35.27 Aligned_cols=60 Identities=17% Similarity=0.181 Sum_probs=38.3
Q ss_pred CCCEEEEEEcCCcccccccccccCCccHHHHHhhc-CeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEE
Q 017890 287 EAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAY-GIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLV 356 (364)
Q Consensus 287 ~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~-G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LI 356 (364)
++|+|++.....++..++++.+. +....+++ |+.++.-- |..+++.+++.+.+ .++|++|
T Consensus 141 ~v~vv~~~~~g~~g~~G~tHs~~----~ea~lr~iPn~~V~~Ps--d~~e~~~~l~~a~~----~~~P~~i 201 (355)
T PTZ00182 141 DCPIVIRGPNGAVGHGGAYHSQS----FEAYFAHVPGLKVVAPS--DPEDAKGLLKAAIR----DPNPVVF 201 (355)
T ss_pred cCCEEEEeCCCCCCCCCCcccch----HHHHHhcCCCCEEEeeC--CHHHHHHHHHHHHh----CCCcEEE
Confidence 56777776555566666665331 22334443 77766543 68888888888876 4689977
No 238
>PRK12754 transketolase; Reviewed
Probab=72.38 E-value=21 Score=39.17 Aligned_cols=102 Identities=14% Similarity=0.045 Sum_probs=62.7
Q ss_pred hhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCccc--ccccccccCCccHHHHHhh
Q 017890 243 LPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAI--STNISEQFRSDGIVVKGRA 320 (364)
Q Consensus 243 lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ai--s~~~~~~~~~~~ia~~a~a 320 (364)
..+|.|+|+- +.-.+.++.+ ..|.. ...+++.+++..++||++|....+++. +++++ .+.++++-.-.-
T Consensus 415 v~iaaGlA~~----~G~~Pf~~tf--~~F~~-r~~~qir~~a~~~l~V~~v~th~gi~~G~DG~TH--q~iEdla~lR~i 485 (663)
T PRK12754 415 TAIANGIALH----GGFLPYTSTF--LMFVE-YARNAVRMAALMKQRQVMVYTHDSIGLGEDGPTH--QPVEQVASLRVT 485 (663)
T ss_pred HHHHhhHHhc----CCCeEEEEee--HHHHH-HHHHHHHHHHHcCCCeEEEEECCccccCCCCCCc--ccHHHHHHHhcC
Confidence 3455566542 1223333333 25554 678889999999999999998888755 33433 233444432222
Q ss_pred cCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEE
Q 017890 321 YGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEV 358 (364)
Q Consensus 321 ~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea 358 (364)
-++.+++- -|..++..+++.|++. .++|+.|-.
T Consensus 486 Pn~~V~~P--aD~~E~~~~~~~a~~~---~~gP~yirl 518 (663)
T PRK12754 486 PNMSTWRP--CDQVESAVAWKYGVER---QDGPTALIL 518 (663)
T ss_pred CCcEEecC--CCHHHHHHHHHHHHhC---CCCCEEEEe
Confidence 36666653 3678888888888762 368987643
No 239
>PRK09212 pyruvate dehydrogenase subunit beta; Validated
Probab=71.06 E-value=41 Score=33.44 Aligned_cols=60 Identities=18% Similarity=0.175 Sum_probs=37.9
Q ss_pred CCCEEEEEEcCCcccccccccccCCccHHHHHhhc-CeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEE
Q 017890 287 EAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAY-GIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLV 356 (364)
Q Consensus 287 ~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~-G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LI 356 (364)
++|+++...+-.++...+++.+. +....++. |+.++.= -|..+++.+++.|.+ .++|++|
T Consensus 110 ~v~vv~~~~~g~~~~~G~tH~~~----~ea~~r~iP~l~V~~P--~d~~e~~~~l~~a~~----~~~Pv~i 170 (327)
T PRK09212 110 KCPIVFRGPNGAAARVAAQHSQC----YAAWYSHIPGLKVVAP--YFAADCKGLLKTAIR----DPNPVIF 170 (327)
T ss_pred CccEEEEeCCCCCCCCCcccccC----HHHHHhcCCCCEEEee--CCHHHHHHHHHHHHh----CCCcEEE
Confidence 56888877665555555554332 22334433 6666643 478889999988875 4789987
No 240
>COG0021 TktA Transketolase [Carbohydrate transport and metabolism]
Probab=68.80 E-value=18 Score=39.40 Aligned_cols=76 Identities=18% Similarity=0.242 Sum_probs=54.0
Q ss_pred HHHHHHHHHHcCCCEEEEEEcCCccc--ccccccccCCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCc
Q 017890 276 FHAALNFAAVMEAPVVFICRNNGWAI--STNISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRP 353 (364)
Q Consensus 276 ~~EALn~Aa~~~LPvIfVV~NNg~ai--s~~~~~~~~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P 353 (364)
..-|+.+|+..++|++||.--..++. ++|+++ +.+.++..=.-.++.++|=- |..+...|.+.|+++ .++|
T Consensus 441 ~r~AiRlaALm~l~~~~V~THDSIgvGEDGPTHq--PiEqLa~LRaiPN~~V~RPa--D~~Et~~aw~~Al~~---~~gP 513 (663)
T COG0021 441 ARPAVRLAALMGLPVIYVFTHDSIGVGEDGPTHQ--PVEQLASLRAIPNLSVIRPA--DANETAAAWKYALER---KDGP 513 (663)
T ss_pred hhHHHHHHHhcCCCeEEEEecCceecCCCCCCCC--cHHHHHHhhccCCceeEecC--ChHHHHHHHHHHHhc---CCCC
Confidence 45679999999999999999998765 556553 23444443334688888732 455788888888874 5789
Q ss_pred EEEEE
Q 017890 354 VLVEV 358 (364)
Q Consensus 354 ~LIea 358 (364)
++|..
T Consensus 514 t~Lil 518 (663)
T COG0021 514 TALIL 518 (663)
T ss_pred eEEEE
Confidence 98753
No 241
>smart00861 Transket_pyr Transketolase, pyrimidine binding domain. Transketolase (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Hansenula polymorpha, there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates.
Probab=68.45 E-value=36 Score=29.89 Aligned_cols=100 Identities=15% Similarity=0.135 Sum_probs=54.4
Q ss_pred hhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcC-CCEEEEEEc-CCcccccccccccCCccHHHHHhh
Q 017890 243 LPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVME-APVVFICRN-NGWAISTNISEQFRSDGIVVKGRA 320 (364)
Q Consensus 243 lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~-LPvIfVV~N-Ng~ais~~~~~~~~~~~ia~~a~a 320 (364)
+++|.|+|+. +. +++++.+.. +.. ...+.+..+..++ +|+|+.... ..++...+++. +.++++-...-
T Consensus 62 vg~a~GlA~~----G~-~pi~~~~~~--f~~-~a~~~~~~~~~~~~~~~v~~~~~g~~~g~~G~tH~--~~~~~~~~~~i 131 (168)
T smart00861 62 VGFAAGLALA----GL-RPVVAIFFT--FFD-RAKDQIRSDGAMGRVPVVVRHDSGGGVGEDGPTHH--SQEDEALLRAI 131 (168)
T ss_pred HHHHHHHHHc----CC-CcEEEeeHH--HHH-HHHHHHHHhCcccCCCEEEEecCccccCCCCcccc--chhHHHHHhcC
Confidence 3445555543 33 556665543 222 3566677777776 566665543 33444344332 22333332222
Q ss_pred cCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEE
Q 017890 321 YGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVE 357 (364)
Q Consensus 321 ~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIe 357 (364)
-|+.++. =.|..+++..++.+++ ..++|+.|-
T Consensus 132 P~~~v~~--P~~~~e~~~~l~~a~~---~~~~p~~i~ 163 (168)
T smart00861 132 PGLKVVA--PSDPAEAKGLLRAAIR---RDDGPPVIR 163 (168)
T ss_pred CCcEEEe--cCCHHHHHHHHHHHHh---CCCCCEEEE
Confidence 3555554 3478899999998884 246797664
No 242
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=66.64 E-value=8.6 Score=41.41 Aligned_cols=55 Identities=22% Similarity=0.225 Sum_probs=39.4
Q ss_pred ccHHHHHHHHHHc--CCCEEEEEEcCCcccccccccccCCccHHHHHhhcCeEEEEEeCCCHHHHH
Q 017890 274 GDFHAALNFAAVM--EAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVY 337 (364)
Q Consensus 274 G~~~EALn~Aa~~--~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~~~~VDGnD~~av~ 337 (364)
++...+|.-+.+| ++|++++++|..---++ +-.++++.||++++.||+|.+.+..
T Consensus 402 rDl~~aLED~~RhGqKlPL~VlvDnGsTeEDi---------pA~~~~k~Ygi~ivVVDHH~Pde~v 458 (715)
T COG1107 402 RDLNFALEDAHRHGQKLPLLVLVDNGSTEEDI---------PAIKQLKAYGIDIVVVDHHYPDEAV 458 (715)
T ss_pred hhHHHHHHHHHhcCCccceEEEEcCCCccccc---------HHHHHHHhcCCCEEEEcCCCCcchh
Confidence 3556667777776 57999999887422221 2346789999999999999876543
No 243
>CHL00144 odpB pyruvate dehydrogenase E1 component beta subunit; Validated
Probab=66.26 E-value=51 Score=32.85 Aligned_cols=60 Identities=12% Similarity=0.089 Sum_probs=34.4
Q ss_pred CCCEEEEEEcCCcccccccccccCCccHHHHHhh-cCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEE
Q 017890 287 EAPVVFICRNNGWAISTNISEQFRSDGIVVKGRA-YGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLV 356 (364)
Q Consensus 287 ~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a-~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LI 356 (364)
++|++++.-.-.+....+++.+ .+....+. -|+.++.- -|+.+.+..++.|.+ .++|++|
T Consensus 110 ~~~vv~~~~g~~~~~~G~tHs~----~~ea~~~~iPgl~V~~P--sd~~d~~~~l~~a~~----~~~Pv~i 170 (327)
T CHL00144 110 TIPIVIRGPGGVGRQLGAEHSQ----RLESYFQSVPGLQIVAC--STPYNAKGLLKSAIR----SNNPVIF 170 (327)
T ss_pred cCCEEEEecCCCCCCCCccccc----cHHHHHhcCCCCEEEEe--CCHHHHHHHHHHHHh----CCCcEEE
Confidence 5677776322222223343322 23234443 36766654 378888888888875 4689987
No 244
>PF13519 VWA_2: von Willebrand factor type A domain; PDB: 3IBS_B 3RAG_B 2X5N_A.
Probab=64.29 E-value=31 Score=29.05 Aligned_cols=73 Identities=18% Similarity=0.081 Sum_probs=43.5
Q ss_pred CCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhcCeEEEEEeCCCHHHHHH
Q 017890 259 DACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYT 338 (364)
Q Consensus 259 ~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~~~~VDGnD~~av~~ 338 (364)
.++.|+++.||.-. ++..+.+..+...++++.+|........ ...+...++.-|..++.++ ++..++.+
T Consensus 99 ~~~~iv~iTDG~~~-~~~~~~~~~~~~~~i~i~~v~~~~~~~~---------~~~l~~la~~tgG~~~~~~-~~~~~l~~ 167 (172)
T PF13519_consen 99 RRRAIVLITDGEDN-SSDIEAAKALKQQGITIYTVGIGSDSDA---------NEFLQRLAEATGGRYFHVD-NDPEDLDD 167 (172)
T ss_dssp EEEEEEEEES-TTH-CHHHHHHHHHHCTTEEEEEEEES-TT-E---------HHHHHHHHHHTEEEEEEE--SSSHHHHH
T ss_pred CceEEEEecCCCCC-cchhHHHHHHHHcCCeEEEEEECCCccH---------HHHHHHHHHhcCCEEEEec-CCHHHHHH
Confidence 56899999999876 4455666666655656544443322111 1235566777788888884 24577777
Q ss_pred HHHH
Q 017890 339 AVQA 342 (364)
Q Consensus 339 a~~~ 342 (364)
++++
T Consensus 168 ~~~~ 171 (172)
T PF13519_consen 168 AFQQ 171 (172)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 7764
No 245
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=61.97 E-value=26 Score=28.73 Aligned_cols=40 Identities=30% Similarity=0.396 Sum_probs=31.9
Q ss_pred cCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCC
Q 017890 257 KKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNG 298 (364)
Q Consensus 257 ~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg 298 (364)
.++.++|++.-.|...+ ..+.+..|...+.|+|.|..+..
T Consensus 52 ~~~d~vi~is~sg~~~~--~~~~~~~ak~~g~~vi~iT~~~~ 91 (131)
T PF01380_consen 52 DPDDLVIIISYSGETRE--LIELLRFAKERGAPVILITSNSE 91 (131)
T ss_dssp STTEEEEEEESSSTTHH--HHHHHHHHHHTTSEEEEEESSTT
T ss_pred cccceeEeeeccccchh--hhhhhHHHHhcCCeEEEEeCCCC
Confidence 35667888888888764 77889999999999988887654
No 246
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=57.95 E-value=57 Score=27.41 Aligned_cols=50 Identities=28% Similarity=0.309 Sum_probs=29.9
Q ss_pred CCccHHHHHhhcCeEEEE--EeCCC-HHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q 017890 310 RSDGIVVKGRAYGIRSIR--VDGND-ALAVYTAVQAAREMAISEKRPVLVEVRLNF 362 (364)
Q Consensus 310 ~~~~ia~~a~a~G~~~~~--VDGnD-~~av~~a~~~A~~~ar~~~~P~LIea~T~R 362 (364)
....+.+.+++.|+..+. |++.+ -.+-.+++.++++ +..+|+|+.|.|-+
T Consensus 45 ~~~~~~~~a~~~Gl~y~~iPv~~~~~~~~~v~~f~~~l~---~~~~Pvl~hC~sG~ 97 (110)
T PF04273_consen 45 SSAEEAAAAEALGLQYVHIPVDGGAITEEDVEAFADALE---SLPKPVLAHCRSGT 97 (110)
T ss_dssp -HHCHHHHHHHCT-EEEE----TTT--HHHHHHHHHHHH---TTTTSEEEE-SCSH
T ss_pred CHHHHHHHHHHcCCeEEEeecCCCCCCHHHHHHHHHHHH---hCCCCEEEECCCCh
Confidence 345677889999988876 45433 2444555556655 35789999998743
No 247
>cd01451 vWA_Magnesium_chelatase Magnesium chelatase: Mg-chelatase catalyses the insertion of Mg into protoporphyrin IX (Proto). In chlorophyll biosynthesis, insertion of Mg2+ into protoporphyrin IX is catalysed by magnesium chelatase in an ATP-dependent reaction. Magnesium chelatase is a three sub-unit (BchI, BchD and BchH) enzyme with a novel arrangement of domains: the C-terminal helical domain is located behind the nucleotide binding site. The BchD domain contains a AAA domain at its N-terminus and a VWA domain at its C-terminus. The VWA domain has been speculated to be involved in mediating protein-protein interactions.
Probab=56.83 E-value=1.4e+02 Score=26.31 Aligned_cols=72 Identities=22% Similarity=0.137 Sum_probs=43.0
Q ss_pred CeEEEEeCCCcccccc--H----HHHHHHHHHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhcCeEEEEEeCCCH
Q 017890 260 ACAVAYTGDGGTSEGD--F----HAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGNDA 333 (364)
Q Consensus 260 ~~vv~~~GDGa~~eG~--~----~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~~~~VDGnD~ 333 (364)
+.+|+++.||.-+.|. . .+....+...+++++.|... .. .....-+...|+.-|...+.++.-+-
T Consensus 99 ~~~ivliTDG~~~~g~~~~~~~~~~~~~~l~~~gi~v~~I~~~-~~--------~~~~~~l~~iA~~tgG~~~~~~d~~~ 169 (178)
T cd01451 99 RPLIVVITDGRANVGPDPTADRALAAARKLRARGISALVIDTE-GR--------PVRRGLAKDLARALGGQYVRLPDLSA 169 (178)
T ss_pred ceEEEEECCCCCCCCCCchhHHHHHHHHHHHhcCCcEEEEeCC-CC--------ccCccHHHHHHHHcCCeEEEcCcCCH
Confidence 5799999999987653 1 33334445566677554211 10 00112355677778888888876666
Q ss_pred HHHHHHH
Q 017890 334 LAVYTAV 340 (364)
Q Consensus 334 ~av~~a~ 340 (364)
.++..++
T Consensus 170 ~~~~~~~ 176 (178)
T cd01451 170 DAIASAV 176 (178)
T ss_pred HHHHHHh
Confidence 6665554
No 248
>PRK13685 hypothetical protein; Provisional
Probab=54.47 E-value=1.7e+02 Score=28.85 Aligned_cols=82 Identities=11% Similarity=0.064 Sum_probs=47.7
Q ss_pred CeEEEEeCCCcccccc-------HHHHHHHHHHcCCCEEEEEEcCCcc-cccccccc---cCCccHHHHHhhcCeEEEEE
Q 017890 260 ACAVAYTGDGGTSEGD-------FHAALNFAAVMEAPVVFICRNNGWA-ISTNISEQ---FRSDGIVVKGRAYGIRSIRV 328 (364)
Q Consensus 260 ~~vv~~~GDGa~~eG~-------~~EALn~Aa~~~LPvIfVV~NNg~a-is~~~~~~---~~~~~ia~~a~a~G~~~~~V 328 (364)
..+|+++-||.-..|. ..++.+.+...+++|-.|-.-+..+ +....+.+ .....+.+.|+.-|...+.+
T Consensus 194 ~~~IILlTDG~~~~~~~~~~~~~~~~aa~~a~~~gi~i~~Ig~G~~~g~~~~~g~~~~~~~d~~~L~~iA~~tgG~~~~~ 273 (326)
T PRK13685 194 PARIVLMSDGKETVPTNPDNPRGAYTAARTAKDQGVPISTISFGTPYGSVEINGQRQPVPVDDESLKKIAQLSGGEFYTA 273 (326)
T ss_pred CCEEEEEcCCCCCCCCCCCCcccHHHHHHHHHHcCCeEEEEEECCCCCCcCcCCceeeecCCHHHHHHHHHhcCCEEEEc
Confidence 4678899999876542 3456777788888874443332211 11100100 12234667788888888887
Q ss_pred eCCCHHHHHHHHHHH
Q 017890 329 DGNDALAVYTAVQAA 343 (364)
Q Consensus 329 DGnD~~av~~a~~~A 343 (364)
+ |..++.+++++.
T Consensus 274 ~--~~~~L~~if~~I 286 (326)
T PRK13685 274 A--SLEELRAVYATL 286 (326)
T ss_pred C--CHHHHHHHHHHH
Confidence 5 556666666554
No 249
>COG1240 ChlD Mg-chelatase subunit ChlD [Coenzyme metabolism]
Probab=54.39 E-value=87 Score=30.56 Aligned_cols=99 Identities=22% Similarity=0.172 Sum_probs=60.8
Q ss_pred CCcccchhHHHHHHHHhhhccCC-CeEEEEeCCCccc----cccHHHHHHHHHHcCC-CEEEEEEcCCcccccccccccC
Q 017890 237 SPIATQLPQAVGVAYSLKMEKKD-ACAVAYTGDGGTS----EGDFHAALNFAAVMEA-PVVFICRNNGWAISTNISEQFR 310 (364)
Q Consensus 237 g~LG~~lp~AvG~A~A~k~~~~~-~~vv~~~GDGa~~----eG~~~EALn~Aa~~~L-PvIfVV~NNg~ais~~~~~~~~ 310 (364)
.||+.+|-+|..+..=.+.++++ .++++++-||=.+ .+...|++..|..... ++-++|.|-. ... ..
T Consensus 154 TPL~~aL~~a~ev~~r~~r~~p~~~~~~vviTDGr~n~~~~~~~~~e~~~~a~~~~~~g~~~lvid~e------~~~-~~ 226 (261)
T COG1240 154 TPLADALRQAYEVLAREKRRGPDRRPVMVVITDGRANVPIPLGPKAETLEAASKLRLRGIQLLVIDTE------GSE-VR 226 (261)
T ss_pred CchHHHHHHHHHHHHHhhccCCCcceEEEEEeCCccCCCCCCchHHHHHHHHHHHhhcCCcEEEEecC------Ccc-cc
Confidence 46667676666665544555544 5788889999874 2335777887776654 4433332211 011 11
Q ss_pred CccHHHHHhhcCeEEEEEeCCCHHHHHHHHHH
Q 017890 311 SDGIVVKGRAYGIRSIRVDGNDALAVYTAVQA 342 (364)
Q Consensus 311 ~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~ 342 (364)
..-..+.|..+|.+++..+...-+.+..+.+.
T Consensus 227 ~g~~~~iA~~~Gg~~~~L~~l~~~~i~~~~r~ 258 (261)
T COG1240 227 LGLAEEIARASGGEYYHLDDLSDDSIVSAVRQ 258 (261)
T ss_pred ccHHHHHHHHhCCeEEecccccchHHHHHHHh
Confidence 12234678889999999998776777766654
No 250
>cd00640 Trp-synth-beta_II Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions. This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan synthase beta chain (Trp-synth_B), cystathionine beta-synthase (CBS), O-acetylserine sulfhydrylase (CS), serine dehydratase (Ser-dehyd), threonine dehydratase (Thr-dehyd), diaminopropionate ammonia lyase (DAL), and threonine synthase (Thr-synth). ACCD catalyzes the conversion of 1-aminocyclopropane-1-carboxylate to alpha-ketobutyrate and ammonia. Tryptophan synthase folds into a tetramer, where the beta chain is the catalytic PLP-binding subunit and catalyzes the formation of L-tryptophan from indole and L-serine. CBS is a tetrameric hemeprotein that catalyzes condensation of serine and homocysteine to cystathionine. CS is a homodimer that catalyzes the formation of L-cysteine from O-acetyl-L-serine. Ser-dehy
Probab=53.42 E-value=1.7e+02 Score=27.04 Aligned_cols=67 Identities=25% Similarity=0.264 Sum_probs=38.9
Q ss_pred ccHHHHHHH-HHHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCC
Q 017890 274 GDFHAALNF-AAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKR 352 (364)
Q Consensus 274 G~~~EALn~-Aa~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~ 352 (364)
|+.--|+.. |...++|+++++.++. ...-....+.+|.+++.+++. ..+ +.+.+.+.+.+..+
T Consensus 59 GN~g~alA~~a~~~g~~~~v~~p~~~------------~~~~~~~~~~~Ga~v~~~~~~-~~~---~~~~a~~~~~~~~~ 122 (244)
T cd00640 59 GNTGIALAAAAARLGLKCTIVMPEGA------------SPEKVAQMRALGAEVVLVPGD-FDD---AIALAKELAEEDPG 122 (244)
T ss_pred cHHHHHHHHHHHHcCCCEEEEECCCC------------CHHHHHHHHHCCCEEEEECCC-HHH---HHHHHHHHHHhCCC
Confidence 333334444 4467889998887763 112335677899999999875 333 33444444444344
Q ss_pred cEEE
Q 017890 353 PVLV 356 (364)
Q Consensus 353 P~LI 356 (364)
..++
T Consensus 123 ~~~~ 126 (244)
T cd00640 123 AYYV 126 (244)
T ss_pred CEec
Confidence 5544
No 251
>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated
Probab=53.25 E-value=48 Score=35.12 Aligned_cols=46 Identities=17% Similarity=0.321 Sum_probs=31.8
Q ss_pred HHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEc
Q 017890 245 QAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRN 296 (364)
Q Consensus 245 ~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~N 296 (364)
+|-|.|.+ .++-.++++..|=|.++ ..-++..|...++|||+|.-.
T Consensus 62 aAdgyar~---tg~~~v~~vt~GpG~~N---~l~~i~~A~~~~~Pvl~IsG~ 107 (568)
T PRK07449 62 LALGLAKA---SKRPVAVIVTSGTAVAN---LYPAVIEAGLTGVPLIVLTAD 107 (568)
T ss_pred HHHHHHHh---hCCCEEEEECCccHHHh---hhHHHHHHhhcCCcEEEEECC
Confidence 45565544 33445667777888886 345677888889999999754
No 252
>KOG3384 consensus Selenoprotein [General function prediction only]
Probab=52.19 E-value=15 Score=32.57 Aligned_cols=46 Identities=22% Similarity=0.445 Sum_probs=32.6
Q ss_pred cccCCCCccCccccccccCCCCCCCCeeEEecCCCCcccCCCCCCCCHHHHHHHHH
Q 017890 82 LDFPGGKVGYTSEMRFIPESSEKRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYS 137 (364)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~~~~g~~~~~~~~~~~s~e~l~~ly~ 137 (364)
-.|||.++.|+--. -|...++|+||+.-+.-...+.+.|.+.+.++
T Consensus 103 ~kFp~vkvkyVrg~----------~P~l~llDadgk~kE~lsI~kWntdtl~eff~ 148 (154)
T KOG3384|consen 103 EKFPGVKVKYVRGS----------DPVLKLLDADGKHKESLSIDKWNTDTLEEFFR 148 (154)
T ss_pred hhCCCceEEEecCC----------CCeeEeecCCCCccceeeecccChHHHHHHHH
Confidence 35666655544222 28899999999986655566778888888877
No 253
>cd01453 vWA_transcription_factor_IIH_type Transcription factors IIH type: TFIIH is a multiprotein complex that is one of the five general transcription factors that binds RNA polymerase II holoenzyme. Orthologues of these genes are found in all completed eukaryotic genomes and all these proteins contain a VWA domain. The p44 subunit of TFIIH functions as a DNA helicase in RNA polymerase II transcription initiation and DNA repair, and its transcriptional activity is dependent on its C-terminal Zn-binding domains. The function of the vWA domain is unclear, but may be involved in complex assembly. The MIDAS motif is not conserved in this sub-group.
Probab=50.82 E-value=1.4e+02 Score=26.82 Aligned_cols=71 Identities=8% Similarity=-0.100 Sum_probs=45.6
Q ss_pred CCeEEEEeCCCccc-cccHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhcCeEEEEEeCCCHHHHH
Q 017890 259 DACAVAYTGDGGTS-EGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVY 337 (364)
Q Consensus 259 ~~~vv~~~GDGa~~-eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~~~~VDGnD~~av~ 337 (364)
.+.++++++||+-. .++..+....++..+++|.+|-..+. ..-+.+.+++-|-..+.+. |.+++.
T Consensus 107 ~~~iiil~sd~~~~~~~~~~~~~~~l~~~~I~v~~IgiG~~------------~~~L~~ia~~tgG~~~~~~--~~~~l~ 172 (183)
T cd01453 107 SREVLIIFSSLSTCDPGNIYETIDKLKKENIRVSVIGLSAE------------MHICKEICKATNGTYKVIL--DETHLK 172 (183)
T ss_pred ceEEEEEEcCCCcCChhhHHHHHHHHHHcCcEEEEEEechH------------HHHHHHHHHHhCCeeEeeC--CHHHHH
Confidence 35578888898764 33455666677777776644433221 1136677888898888875 667777
Q ss_pred HHHHHH
Q 017890 338 TAVQAA 343 (364)
Q Consensus 338 ~a~~~A 343 (364)
+++.++
T Consensus 173 ~~~~~~ 178 (183)
T cd01453 173 ELLLEH 178 (183)
T ss_pred HHHHhc
Confidence 776653
No 254
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=50.69 E-value=50 Score=37.17 Aligned_cols=74 Identities=16% Similarity=0.161 Sum_probs=47.8
Q ss_pred CCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEE-EEcCCcccccccccccCCccHHHHHhhcCeEEEEEeCCCHH
Q 017890 259 DACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFI-CRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGNDAL 334 (364)
Q Consensus 259 ~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfV-V~NNg~ais~~~~~~~~~~~ia~~a~a~G~~~~~VDGnD~~ 334 (364)
+++.||+-|+... +.-+-+|..+|..++.|...| |++-... ..+..+.......-..|+.+|.+.+++.|.|+.
T Consensus 249 e~ilvcI~~~~~~-e~liR~a~RlA~~~~a~~~av~v~~~~~~-~~~~~~~~~l~~~~~Lae~lGae~~~l~~~dv~ 323 (890)
T COG2205 249 ERILVCISGSPGS-EKLIRRAARLASRLHAKWTAVYVETPELH-RLSEKEARRLHENLRLAEELGAEIVTLYGGDVA 323 (890)
T ss_pred ceEEEEECCCCch-HHHHHHHHHHHHHhCCCeEEEEEeccccc-cccHHHHHHHHHHHHHHHHhCCeEEEEeCCcHH
Confidence 5677777666544 457888999999999997655 4433221 111111112233456889999999999998853
No 255
>COG3958 Transketolase, C-terminal subunit [Carbohydrate transport and metabolism]
Probab=50.54 E-value=72 Score=31.80 Aligned_cols=100 Identities=16% Similarity=0.152 Sum_probs=58.8
Q ss_pred chhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHH-HHcCCCEEEEEEcCCccc--ccccccccCCccHHHHH
Q 017890 242 QLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFA-AVMEAPVVFICRNNGWAI--STNISEQFRSDGIVVKG 318 (364)
Q Consensus 242 ~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~A-a~~~LPvIfVV~NNg~ai--s~~~~~~~~~~~ia~~a 318 (364)
.++.|+|.|++-| .+.++-+ +.|.++..||=+..+ +..++||-+|+-+-|+.- .++++. ..+|+ |
T Consensus 61 mvg~AAGLA~~Gk-----~Pfv~tf--a~F~s~Ra~EQir~~iay~~lnVKiv~t~~G~t~g~dG~sHq--~~EDi---a 128 (312)
T COG3958 61 MVGTAAGLALAGK-----KPFVSTF--AAFLSRRAWEQIRNSIAYNNLNVKIVATHAGVTYGEDGSSHQ--ALEDI---A 128 (312)
T ss_pred HHHHHHHHHhcCC-----Cceeech--HHHHHHHHHHHHHHHhhhccCCeEEEEecCCcccCCCCccch--hHHHH---H
Confidence 3567777777632 3444433 577777777755544 566899999999998643 333332 22344 3
Q ss_pred hhcCeEEEEE-eCCCHHHHHHHHHHHHHHhhcCCCcEEEE
Q 017890 319 RAYGIRSIRV-DGNDALAVYTAVQAAREMAISEKRPVLVE 357 (364)
Q Consensus 319 ~a~G~~~~~V-DGnD~~av~~a~~~A~~~ar~~~~P~LIe 357 (364)
--=|+|=..| +=-|..+..+++..+.+ -+||+-+-
T Consensus 129 imR~lpn~~V~~P~D~v~~~~i~~~~~~----~~GP~Y~R 164 (312)
T COG3958 129 IMRGLPNMTVIAPADAVETRAILDQIAD----YKGPVYMR 164 (312)
T ss_pred HHhcCCCceEEccCcHHHHHHHHHHHHh----cCCCEEEE
Confidence 3334433332 33456677777766665 47887653
No 256
>cd01561 CBS_like CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase. CBS is a unique heme-containing enzyme that catalyzes a pyridoxal 5'-phosphate (PLP)-dependent condensation of serine and homocysteine to give cystathionine. Deficiency of CBS leads to homocystinuria, an inherited disease of sulfur metabolism characterized by increased levels of the toxic metabolite homocysteine. Cysteine synthase on the other hand catalyzes the last step of cysteine biosynthesis. This subgroup also includes an O-Phosphoserine sulfhydrylase found in hyperthermophilic archaea which produces L-cysteine from sulfide and the more thermostable O-phospho-L-serine.
Probab=48.73 E-value=1.7e+02 Score=28.14 Aligned_cols=48 Identities=17% Similarity=0.126 Sum_probs=30.9
Q ss_pred cccHHHHHHHH-HHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhcCeEEEEEeCCC
Q 017890 273 EGDFHAALNFA-AVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGND 332 (364)
Q Consensus 273 eG~~~EALn~A-a~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~~~~VDGnD 332 (364)
.|..--++..+ +.+++|+++|+..+- ...-....+.||.+++.+++..
T Consensus 61 sGN~g~alA~~a~~~G~~~~i~vp~~~------------~~~k~~~~~~~Ga~v~~~~~~~ 109 (291)
T cd01561 61 SGNTGIGLAMVAAAKGYRFIIVMPETM------------SEEKRKLLRALGAEVILTPEAE 109 (291)
T ss_pred CChHHHHHHHHHHHcCCeEEEEECCCC------------CHHHHHHHHHcCCEEEEeCCCC
Confidence 34444445544 578999988886541 1123356778999999998753
No 257
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=48.66 E-value=76 Score=26.07 Aligned_cols=41 Identities=22% Similarity=0.253 Sum_probs=32.8
Q ss_pred cCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCc
Q 017890 257 KKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGW 299 (364)
Q Consensus 257 ~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ 299 (364)
+++.+++++---|...+ .-+++..|...+.|+|.|..|..-
T Consensus 46 ~~~d~vi~iS~sG~t~~--~~~~~~~a~~~g~~vi~iT~~~~s 86 (128)
T cd05014 46 TPGDVVIAISNSGETDE--LLNLLPHLKRRGAPIIAITGNPNS 86 (128)
T ss_pred CCCCEEEEEeCCCCCHH--HHHHHHHHHHCCCeEEEEeCCCCC
Confidence 46677888877777764 788899999999999999987653
No 258
>COG2515 Acd 1-aminocyclopropane-1-carboxylate deaminase [Amino acid transport and metabolism]
Probab=48.63 E-value=1e+02 Score=30.92 Aligned_cols=86 Identities=17% Similarity=0.251 Sum_probs=51.5
Q ss_pred eEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhcCeEEEEEe-CCCHHHHHHH
Q 017890 261 CAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVD-GNDALAVYTA 339 (364)
Q Consensus 261 ~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~~~~VD-GnD~~av~~a 339 (364)
-+++.+ |+.+..........|+..++..|++++|-- . .+...+-.-+.+-+|....-|| |+|+. +..-
T Consensus 65 dTlvT~--GgiQSNh~r~tAavA~~lGl~~v~ile~~~-------~-~y~~ngn~Ll~~l~G~~~~~~~~~~d~~-~~~~ 133 (323)
T COG2515 65 DTLVTY--GGIQSNHVRQTAAVAAKLGLKCVLILENIE-------A-NYLLNGNLLLSKLMGAEVRAVDAGTDIG-INAS 133 (323)
T ss_pred cEEEEe--cccchhHHHHHHHHHHhcCCcEEEEEeccc-------c-ccccccchhhhhhcCceEEEecCCCChh-hchh
Confidence 344444 577666677777778889999999999854 1 1111122233445799998886 56763 2333
Q ss_pred HHHHHHHh-hcCCCcEEEE
Q 017890 340 VQAAREMA-ISEKRPVLVE 357 (364)
Q Consensus 340 ~~~A~~~a-r~~~~P~LIe 357 (364)
+++..+.+ +++++|.+|-
T Consensus 134 ~~~~~e~~~~~g~kpyvIp 152 (323)
T COG2515 134 AEELAEEVRKQGGKPYVIP 152 (323)
T ss_pred hHHHHHHHHhcCCCCcEec
Confidence 33333332 3467898774
No 259
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=44.77 E-value=1.7e+02 Score=28.02 Aligned_cols=94 Identities=21% Similarity=0.173 Sum_probs=57.1
Q ss_pred HHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHH-cCCCEEEEEEcCCcccccccccccCCccHHHHHhhcCeEEEEE
Q 017890 250 AYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAV-MEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRV 328 (364)
Q Consensus 250 A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~-~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~~~~V 328 (364)
.+|..+...+...+.+.-|-.+..|+. +-+..+.. -++||+. .| |-+. + .-...+..+|...+.+
T Consensus 74 ~~A~~~~~~GA~aisvlte~~~f~g~~-~~l~~v~~~v~iPvl~--kd--fi~~-~--------~qi~~a~~~GAD~VlL 139 (260)
T PRK00278 74 EIAKAYEAGGAACLSVLTDERFFQGSL-EYLRAARAAVSLPVLR--KD--FIID-P--------YQIYEARAAGADAILL 139 (260)
T ss_pred HHHHHHHhCCCeEEEEecccccCCCCH-HHHHHHHHhcCCCEEe--ee--ecCC-H--------HHHHHHHHcCCCEEEE
Confidence 455555556677888888888777764 33554443 5789883 21 2111 1 1235567789999988
Q ss_pred eCCC--HHHHHHHHHHHHHHhhcCCCcEEEEEEee
Q 017890 329 DGND--ALAVYTAVQAAREMAISEKRPVLVEVRLN 361 (364)
Q Consensus 329 DGnD--~~av~~a~~~A~~~ar~~~~P~LIea~T~ 361 (364)
++.+ ...+.+.++ +++.-+.-+++|+.+.
T Consensus 140 i~~~l~~~~l~~li~----~a~~lGl~~lvevh~~ 170 (260)
T PRK00278 140 IVAALDDEQLKELLD----YAHSLGLDVLVEVHDE 170 (260)
T ss_pred EeccCCHHHHHHHHH----HHHHcCCeEEEEeCCH
Confidence 8765 334444444 4444577888888764
No 260
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]
Probab=43.37 E-value=1.7e+02 Score=32.02 Aligned_cols=105 Identities=13% Similarity=0.114 Sum_probs=59.5
Q ss_pred ccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCc-ccccccccccCCccHHHHH
Q 017890 240 ATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGW-AISTNISEQFRSDGIVVKG 318 (364)
Q Consensus 240 G~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~-ais~~~~~~~~~~~ia~~a 318 (364)
+-|-.+..++++|.. .-++||++.. .|-+=....-+.=.+..+|||+|+|+-.|. +.+.+++.. +.+..
T Consensus 366 AEQHAVT~AAGlA~~---G~kPvvaIYS--TFLQRAYDQliHDvaiqnLPV~faIDRAGivG~DG~TH~G-----~fDls 435 (627)
T COG1154 366 AEQHAVTFAAGLAAE---GMKPVVAIYS--TFLQRAYDQLIHDVAIQNLPVTFAIDRAGIVGADGPTHQG-----LFDLS 435 (627)
T ss_pred hHHHHHHHHHHHHhC---CCCCEEEEec--HHHHHHHHHHHHHHHhccCCeEEEEecCcccCCCCCcccc-----HHHHH
Confidence 334444444444432 3345666652 232222233333456689999999997774 566665532 22222
Q ss_pred hhcCeEEEEE-eCCCHHHHHHHHHHHHHHhhcCCCcEEEE
Q 017890 319 RAYGIRSIRV-DGNDALAVYTAVQAAREMAISEKRPVLVE 357 (364)
Q Consensus 319 ~a~G~~~~~V-DGnD~~av~~a~~~A~~~ar~~~~P~LIe 357 (364)
----+|.+.| --.|.+++...+..|..+ .++|+.|-
T Consensus 436 ~l~~iPnmvi~aP~de~el~~ml~ta~~~---~~gP~AiR 472 (627)
T COG1154 436 FLRCIPNMVIMAPRDEEELRQMLYTALAQ---DDGPVAIR 472 (627)
T ss_pred HHhcCCCcEEecCCCHHHHHHHHHHHHhc---CCCCeEEE
Confidence 1113344433 235889999999999885 55899875
No 261
>COG1303 Uncharacterized protein conserved in archaea [Function unknown]
Probab=43.30 E-value=60 Score=29.56 Aligned_cols=46 Identities=24% Similarity=0.394 Sum_probs=35.8
Q ss_pred ccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEe
Q 017890 312 DGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRL 360 (364)
Q Consensus 312 ~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T 360 (364)
..++--|++||..++-++|.+-+.+.+.++...++ -+||..|+..+
T Consensus 21 THV~LtARAfGA~gil~~~e~De~v~esv~dVv~r---wGG~F~v~~~~ 66 (179)
T COG1303 21 THVALTARAFGADGILLDGEEDEKVVESVEDVVER---WGGPFFVKFGV 66 (179)
T ss_pred hhhhhhhHhhCCceEEEcCcccHHHHHHHHHHHHh---cCCCEEEEEcc
Confidence 34566789999999999998667787877776663 78998887643
No 262
>PRK10490 sensor protein KdpD; Provisional
Probab=41.53 E-value=98 Score=35.10 Aligned_cols=91 Identities=11% Similarity=0.000 Sum_probs=53.2
Q ss_pred CCeEEEEeCCCccccccHHHHHHHHHHcCCCEE-EEEEcCCcccccccccccCCccHHHHHhhcCeEEEEEeCCCHHHHH
Q 017890 259 DACAVAYTGDGGTSEGDFHAALNFAAVMEAPVV-FICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVY 337 (364)
Q Consensus 259 ~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvI-fVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~~~~VDGnD~~av~ 337 (364)
+++.||+-|+ ..++--+..+..+|...+.|++ +.|+............. ......+.|+.+|.++..+.|.|+.+
T Consensus 251 eriLV~v~~~-~~~~~lIr~~~rlA~~~~a~~~~l~V~~~~~~~~~~~~~~-~l~~~~~lA~~lGa~~~~~~~~dva~-- 326 (895)
T PRK10490 251 DAILLCIGHN-TGSEKLVRTAARLAARLGSVWHAVYVETPRLHRLPEKKRR-AILSALRLAQELGAETATLSDPAEEK-- 326 (895)
T ss_pred CeEEEEECCC-cchHHHHHHHHHHHHhcCCCEEEEEEecCCcCcCCHHHHH-HHHHHHHHHHHcCCEEEEEeCCCHHH--
Confidence 4456666555 5556677888899999999874 33444332211111111 11122358899999999999988643
Q ss_pred HHHHHHHHHhhcCCCcEEEE
Q 017890 338 TAVQAAREMAISEKRPVLVE 357 (364)
Q Consensus 338 ~a~~~A~~~ar~~~~P~LIe 357 (364)
.-.++|+..+-..+|-
T Consensus 327 ----~i~~~A~~~~vt~IVi 342 (895)
T PRK10490 327 ----AVLRYAREHNLGKIII 342 (895)
T ss_pred ----HHHHHHHHhCCCEEEE
Confidence 2234555555444443
No 263
>PRK06381 threonine synthase; Validated
Probab=41.23 E-value=2.4e+02 Score=27.48 Aligned_cols=65 Identities=23% Similarity=0.284 Sum_probs=37.8
Q ss_pred ccHHHHHHHH-HHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCC
Q 017890 274 GDFHAALNFA-AVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKR 352 (364)
Q Consensus 274 G~~~EALn~A-a~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~ 352 (364)
|..--++.++ +..++|+++|+..+- ...-.+..+.||.+++.+++. .. ++.+.+.+.+++ ++
T Consensus 72 GN~g~alA~~aa~~G~~~~ivvp~~~------------~~~~~~~l~~~GA~V~~~~~~-~~---~~~~~a~~~~~~-~~ 134 (319)
T PRK06381 72 GNYGASIAYFARLYGLKAVIFIPRSY------------SNSRVKEMEKYGAEIIYVDGK-YE---EAVERSRKFAKE-NG 134 (319)
T ss_pred cHHHHHHHHHHHHcCCcEEEEECCCC------------CHHHHHHHHHcCCEEEEcCCC-HH---HHHHHHHHHHHH-cC
Confidence 3333445444 568899988887542 112335678899999999874 32 233444444443 34
Q ss_pred cEE
Q 017890 353 PVL 355 (364)
Q Consensus 353 P~L 355 (364)
..+
T Consensus 135 ~~~ 137 (319)
T PRK06381 135 IYD 137 (319)
T ss_pred cEe
Confidence 444
No 264
>PF14399 Transpep_BrtH: NlpC/p60-like transpeptidase
Probab=39.96 E-value=1.8e+02 Score=27.89 Aligned_cols=44 Identities=18% Similarity=0.139 Sum_probs=36.3
Q ss_pred HHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEee
Q 017890 314 IVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLN 361 (364)
Q Consensus 314 ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~ 361 (364)
+...++.+|+++......|.++..+.++++++ .++|++|-+-+|
T Consensus 55 ~~~~~~~lG~~~~~~~~~~~~~~~~~l~~~l~----~g~pv~~~~D~~ 98 (317)
T PF14399_consen 55 EENLLERLGIKYEWREFSSPDEAWEELKEALD----AGRPVIVWVDMY 98 (317)
T ss_pred HHHHHHHCCceEEEEecCCHHHHHHHHHHHHh----CCCceEEEeccc
Confidence 44566778999998888899999999998887 578999988765
No 265
>cd05009 SIS_GlmS_GlmD_2 SIS (Sugar ISomerase) domain repeat 2 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=39.90 E-value=79 Score=26.60 Aligned_cols=40 Identities=10% Similarity=0.148 Sum_probs=29.5
Q ss_pred cCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcC
Q 017890 257 KKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNN 297 (364)
Q Consensus 257 ~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NN 297 (364)
+++.++|.+.++|+..+ ...+.+..+...+.|+|.|..+.
T Consensus 60 ~~~~~vi~is~~g~t~~-~~~~~~~~~~~~~~~vi~it~~~ 99 (153)
T cd05009 60 DEGTPVIFLAPEDRLEE-KLESLIKEVKARGAKVIVITDDG 99 (153)
T ss_pred cCCCcEEEEecCChhHH-HHHHHHHHHHHcCCEEEEEecCC
Confidence 34667888888886543 25667788888888999887765
No 266
>PRK13683 hypothetical protein; Provisional
Probab=39.70 E-value=33 Score=27.94 Aligned_cols=38 Identities=26% Similarity=0.351 Sum_probs=29.4
Q ss_pred cCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q 017890 321 YGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNF 362 (364)
Q Consensus 321 ~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R 362 (364)
+-+.+-|=+-.|.+++|.-++.|++ .+.|.|||..+-+
T Consensus 13 ~P~SVQRKe~edA~alYq~I~~am~----sg~P~llELtCek 50 (87)
T PRK13683 13 MPISVQRKEAEDAEALYQQIRQAMR----SGNPRLLELTCEK 50 (87)
T ss_pred cceEEEeccHHHHHHHHHHHHHHHh----cCCCcEEEEEecC
Confidence 3344555555689999999999986 5789999998865
No 267
>PLN03013 cysteine synthase
Probab=38.65 E-value=90 Score=32.56 Aligned_cols=14 Identities=21% Similarity=0.283 Sum_probs=6.9
Q ss_pred HHhhcCeEEEEEeC
Q 017890 317 KGRAYGIRSIRVDG 330 (364)
Q Consensus 317 ~a~a~G~~~~~VDG 330 (364)
..++||.+++.|++
T Consensus 216 ~ira~GAeVi~v~~ 229 (429)
T PLN03013 216 LLKAFGAELVLTDP 229 (429)
T ss_pred HHHHcCCEEEEECC
Confidence 34445555555543
No 268
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=37.28 E-value=2.8e+02 Score=30.13 Aligned_cols=92 Identities=23% Similarity=0.183 Sum_probs=54.8
Q ss_pred cchhHHHHHHHHhhh----c-cCCCeEEEEeCCCcccccc---------HHHHHHHHHH---cCCCEEEEEEcCCccccc
Q 017890 241 TQLPQAVGVAYSLKM----E-KKDACAVAYTGDGGTSEGD---------FHAALNFAAV---MEAPVVFICRNNGWAIST 303 (364)
Q Consensus 241 ~~lp~AvG~A~A~k~----~-~~~~~vv~~~GDGa~~eG~---------~~EALn~Aa~---~~LPvIfVV~NNg~ais~ 303 (364)
.+-|.+-|+..|.+. . +...++|+++-||..+.+. ..+++..|.. .++++++|-.-+.
T Consensus 474 GgTpL~~gL~~A~~~l~~~~~~~~~~~iVLlTDG~~n~~~~~~~~~~~~~~~~~~~a~~~~~~gi~~~vId~g~~----- 548 (584)
T PRK13406 474 GGTPLAAGLDAAAALALQVRRKGMTPTVVLLTDGRANIARDGTAGRAQAEEDALAAARALRAAGLPALVIDTSPR----- 548 (584)
T ss_pred CCChHHHHHHHHHHHHHHhccCCCceEEEEEeCCCCCCCccccccccchhhHHHHHHHHHHhcCCeEEEEecCCC-----
Confidence 344455555444432 1 2236899999999987542 2444555443 3455544422111
Q ss_pred ccccccCCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHH
Q 017890 304 NISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAA 343 (364)
Q Consensus 304 ~~~~~~~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A 343 (364)
......+.|+..|..++.++--|...|.++++.+
T Consensus 549 ------~~~~~~~LA~~~gg~y~~l~~~~a~~~~~~v~~~ 582 (584)
T PRK13406 549 ------PQPQARALAEAMGARYLPLPRADAGRLSQAVRAA 582 (584)
T ss_pred ------CcHHHHHHHHhcCCeEEECCCCCHHHHHHHHHhh
Confidence 1123557788899999999877888887777654
No 269
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric. This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.
Probab=36.34 E-value=2.1e+02 Score=33.65 Aligned_cols=108 Identities=15% Similarity=0.080 Sum_probs=65.1
Q ss_pred hhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhcC
Q 017890 243 LPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYG 322 (364)
Q Consensus 243 lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G 322 (364)
+.+++|++.+ +.++.+++--.++. -.+|.|-.++-..+|+|++|.+-.+.... ..-.-...|+ -.++.-|
T Consensus 64 ~~av~GA~~a------Gara~T~TSs~GL~--LM~e~l~~~ag~~~P~Vi~va~R~~~~~~-~~i~~dh~Dv-~~~R~~G 133 (1165)
T TIGR02176 64 AGAVHGALQT------GALTTTFTASQGLL--LMIPNMYKIAGELLPCVFHVSARAIAAHA-LSIFGDHQDV-MAARQTG 133 (1165)
T ss_pred HHHHHhHhhc------CCCEEEecChhHHH--HHHHHHHHHHhccCCEEEEEecCCCCCCC-CccCCCchHH-HHhhcCC
Confidence 4566676554 23455544333333 25787866666689999998876554221 0001111233 3446678
Q ss_pred eEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q 017890 323 IRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNF 362 (364)
Q Consensus 323 ~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R 362 (364)
|.++- ..++.++++-.-.|...|.+...|+++-...+|
T Consensus 134 ~ivl~--s~svQEa~D~al~A~~lAe~~~~Pvi~~~Dgf~ 171 (1165)
T TIGR02176 134 FAMLA--SSSVQEVMDLALVAHLATIEARVPFMHFFDGFR 171 (1165)
T ss_pred eEEEe--CCCHHHHHHHHHHHHHHHHhcCCCEEEEecCce
Confidence 74443 357888888888888888888889987665544
No 270
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=36.30 E-value=1.3e+02 Score=29.46 Aligned_cols=55 Identities=13% Similarity=0.243 Sum_probs=40.9
Q ss_pred cccHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhcCeEEEEEe
Q 017890 273 EGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVD 329 (364)
Q Consensus 273 eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~~~~VD 329 (364)
.-++.|-...|...++.|++.+..+...-..+.+.+. +...++.+..|+.++.||
T Consensus 72 ~~dl~elv~Ya~~KgVgi~lw~~~~~~~~~~~~~~~~--~~~f~~~~~~Gv~GvKid 126 (273)
T PF10566_consen 72 DFDLPELVDYAKEKGVGIWLWYHSETGGNVANLEKQL--DEAFKLYAKWGVKGVKID 126 (273)
T ss_dssp T--HHHHHHHHHHTT-EEEEEEECCHTTBHHHHHCCH--HHHHHHHHHCTEEEEEEE
T ss_pred ccCHHHHHHHHHHcCCCEEEEEeCCcchhhHhHHHHH--HHHHHHHHHcCCCEEeeC
Confidence 4568888999999999999988888754444445552 667788889999999987
No 271
>TIGR01415 trpB_rel pyridoxal-phosphate dependent TrpB-like enzyme. This model represents a family of pyridoxal-phosphate dependent enzyme (pfam00291) closely related to the beta subunit of tryptophan synthase (TIGR00263). However, the only case in which a member of this family replaces a member of TIGR00263 is in Sulfolobus species which contain two sequences which hit this model, one of which is proximal to the alpha subunit. In every other case so far, either the species appears not to make tryptophan (there is no trp synthase alpha subunit), or a trp synthase beta subunit matching TIGR00263 is also found.
Probab=35.64 E-value=4.9e+02 Score=26.89 Aligned_cols=72 Identities=22% Similarity=0.196 Sum_probs=38.6
Q ss_pred HHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHH-HHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhcCeE
Q 017890 246 AVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFA-AVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIR 324 (364)
Q Consensus 246 AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~A-a~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~ 324 (364)
|+..++..+..+.. .+++-.|.|- +--++.+| +..++++++++-...+..+ ..-....+.||.+
T Consensus 105 A~~~~~~a~~~G~~-~~vtetssGN-----~G~alA~aaa~~Gl~~~V~mp~~s~~~k---------~~k~~~m~~~GA~ 169 (419)
T TIGR01415 105 AIAQAYYAKIEGAK-RLVTETGAGQ-----WGSALSLAGALFGLECKVFMVRVSFNQK---------PYRKYLMELYGAE 169 (419)
T ss_pred HHHHHHHHHHcCCC-eEEEecCchH-----HHHHHHHHHHHcCCcEEEEEeCCCcccC---------HHHHHHHHHcCCE
Confidence 44444444444433 3443333332 33445554 5689998766654322111 0112457889999
Q ss_pred EEEEeCCC
Q 017890 325 SIRVDGND 332 (364)
Q Consensus 325 ~~~VDGnD 332 (364)
++.+++..
T Consensus 170 Vi~~~~~~ 177 (419)
T TIGR01415 170 VIPSPSEF 177 (419)
T ss_pred EEEECCch
Confidence 99998753
No 272
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=33.84 E-value=90 Score=25.93 Aligned_cols=40 Identities=23% Similarity=0.257 Sum_probs=33.4
Q ss_pred cCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCC
Q 017890 257 KKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNG 298 (364)
Q Consensus 257 ~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg 298 (364)
+++..+|++.--|...+ .-+++..|...+.|+|.|..+..
T Consensus 46 ~~~dl~I~iS~SG~t~~--~~~~~~~a~~~g~~vi~iT~~~~ 85 (120)
T cd05710 46 TEKSVVILASHSGNTKE--TVAAAKFAKEKGATVIGLTDDED 85 (120)
T ss_pred CCCcEEEEEeCCCCChH--HHHHHHHHHHcCCeEEEEECCCC
Confidence 45678888888888874 78899999999999999988654
No 273
>TIGR01139 cysK cysteine synthase A. This model distinguishes cysteine synthase A (CysK) from cysteine synthase B (CysM). CysM differs in having a broader specificity that also allows the use of thiosulfate to produce cysteine thiosulfonate.
Probab=33.54 E-value=1.6e+02 Score=28.43 Aligned_cols=62 Identities=21% Similarity=0.182 Sum_probs=35.0
Q ss_pred HHH-HHHHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcE
Q 017890 279 ALN-FAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPV 354 (364)
Q Consensus 279 ALn-~Aa~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~ 354 (364)
++. .|+.+++|+++++-.+- + ..-.+..+.||.+++.++++. ....+++.+.+.+.+.+++.
T Consensus 71 alA~~a~~~Gl~~~i~vp~~~-----~-------~~k~~~~~~~GA~v~~~~~~~--~~~~~~~~a~~~~~~~~~~~ 133 (298)
T TIGR01139 71 ALAMVAAARGYKLILTMPETM-----S-------IERRKLLKAYGAELVLTPGAE--GMKGAIAKAEEIAASTPNSY 133 (298)
T ss_pred HHHHHHHHcCCeEEEEeCCcc-----C-------HHHHHHHHHcCCEEEEECCCC--CHHHHHHHHHHHHHhCCCcE
Confidence 344 44568899877775441 0 112345678999999888752 12234445555444443334
No 274
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=32.50 E-value=98 Score=25.29 Aligned_cols=40 Identities=30% Similarity=0.312 Sum_probs=33.5
Q ss_pred cCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCC
Q 017890 257 KKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNG 298 (364)
Q Consensus 257 ~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg 298 (364)
+++.++|++.-.|...+ .-+++..|...+.|+|.|..|..
T Consensus 45 ~~~d~~I~iS~sG~t~e--~~~~~~~a~~~g~~vi~iT~~~~ 84 (126)
T cd05008 45 DEDTLVIAISQSGETAD--TLAALRLAKEKGAKTVAITNVVG 84 (126)
T ss_pred CCCcEEEEEeCCcCCHH--HHHHHHHHHHcCCeEEEEECCCC
Confidence 46678888888888875 77889999999999999998754
No 275
>PRK11761 cysM cysteine synthase B; Provisional
Probab=32.22 E-value=3.7e+02 Score=26.13 Aligned_cols=45 Identities=29% Similarity=0.248 Sum_probs=29.7
Q ss_pred ccHHHHHHHH-HHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhcCeEEEEEeC
Q 017890 274 GDFHAALNFA-AVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDG 330 (364)
Q Consensus 274 G~~~EALn~A-a~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~~~~VDG 330 (364)
|..--++..+ +.+++|+++|+-++- ...-.+..+.||.+++.+++
T Consensus 72 GN~g~alA~~a~~~G~~~~i~~p~~~------------~~~k~~~~~~~GA~v~~~~~ 117 (296)
T PRK11761 72 GNTGIALAMIAAIKGYRMKLIMPENM------------SQERRAAMRAYGAELILVPK 117 (296)
T ss_pred ChHHHHHHHHHHHcCCCEEEEECCCC------------CHHHHHHHHHcCCEEEEeCC
Confidence 4444445544 468899988886541 11234567789999999985
No 276
>PRK07476 eutB threonine dehydratase; Provisional
Probab=30.72 E-value=2.2e+02 Score=27.98 Aligned_cols=46 Identities=20% Similarity=0.132 Sum_probs=29.4
Q ss_pred ccHHHHHHHH-HHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhcCeEEEEEeCC
Q 017890 274 GDFHAALNFA-AVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGN 331 (364)
Q Consensus 274 G~~~EALn~A-a~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~~~~VDGn 331 (364)
|..--++.++ +..++|+++++..+- ...-....+.||.+++.+++.
T Consensus 76 GN~g~alA~~a~~~G~~~~i~vp~~~------------~~~k~~~~~~~GA~V~~~~~~ 122 (322)
T PRK07476 76 GNHGRALAYAARALGIRATICMSRLV------------PANKVDAIRALGAEVRIVGRS 122 (322)
T ss_pred ChHHHHHHHHHHHhCCCEEEEeCCCC------------CHHHHHHHHHcCCEEEEECCC
Confidence 4444445544 468899888875441 112335568899999998864
No 277
>smart00115 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues. Cysteine aspartases that mediate programmed cell death (apoptosis). Caspases are synthesised as zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologues.
Probab=30.48 E-value=1.9e+02 Score=27.29 Aligned_cols=57 Identities=9% Similarity=0.078 Sum_probs=38.4
Q ss_pred CEEEEEEcCCccccccc-ccccCCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHH
Q 017890 289 PVVFICRNNGWAISTNI-SEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAARE 345 (364)
Q Consensus 289 PvIfVV~NNg~ais~~~-~~~~~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~ 345 (364)
.+.+||.|..|.-..+. ........+++.++.+|+.+....--+..++.+++++..+
T Consensus 9 g~alII~n~~f~~~~~r~g~~~D~~~l~~~f~~lgF~V~~~~dlt~~em~~~l~~~~~ 66 (241)
T smart00115 9 GLALIINNENFHSLPRRNGTDVDAENLTELFQSLGYEVHVKNNLTAEEMLEELKEFAE 66 (241)
T ss_pred cEEEEEECccCCCCcCCCCcHHHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHHh
Confidence 46677777777521111 1111234577888999999998876788999999988655
No 278
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=30.39 E-value=1e+02 Score=25.50 Aligned_cols=55 Identities=22% Similarity=0.253 Sum_probs=40.8
Q ss_pred cCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhcCeEEEEE
Q 017890 257 KKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRV 328 (364)
Q Consensus 257 ~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~~~~V 328 (364)
+++.++|++.-.|...+ .-+++..|...+.|+|.|..|+ ++++.+...|.+.+.|
T Consensus 42 ~~~dl~I~iS~SG~t~e--~i~~~~~a~~~g~~iI~IT~~~---------------~l~~~~~~~~~~~~~~ 96 (119)
T cd05017 42 DRKTLVIAVSYSGNTEE--TLSAVEQAKERGAKIVAITSGG---------------KLLEMAREHGVPVIII 96 (119)
T ss_pred CCCCEEEEEECCCCCHH--HHHHHHHHHHCCCEEEEEeCCc---------------hHHHHHHHcCCcEEEC
Confidence 46678888888888874 7889999999999999888532 1445555557666665
No 279
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=30.00 E-value=2.9e+02 Score=26.42 Aligned_cols=35 Identities=23% Similarity=0.477 Sum_probs=21.5
Q ss_pred EEEeCCCcc--ccccHHHHHHHHHHc---CCCEEEEEEcC
Q 017890 263 VAYTGDGGT--SEGDFHAALNFAAVM---EAPVVFICRNN 297 (364)
Q Consensus 263 v~~~GDGa~--~eG~~~EALn~Aa~~---~LPvIfVV~NN 297 (364)
|.+--||+. ..|.+.-++.+|..+ +..++|+|.+.
T Consensus 2 i~ir~Da~~~iG~GHv~Rcl~LA~~l~~~g~~v~f~~~~~ 41 (279)
T TIGR03590 2 ILFRADASSEIGLGHVMRCLTLARALHAQGAEVAFACKPL 41 (279)
T ss_pred EEEEecCCccccccHHHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 344556665 456677777777654 34677777654
No 280
>PLN02569 threonine synthase
Probab=29.34 E-value=3.9e+02 Score=28.28 Aligned_cols=49 Identities=14% Similarity=0.183 Sum_probs=31.9
Q ss_pred HHHHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHH
Q 017890 282 FAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQA 342 (364)
Q Consensus 282 ~Aa~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~ 342 (364)
.|+..++++++++-.+... ..-....++||..++.|+| +.++..+..++
T Consensus 205 yaa~~Gl~~~I~vP~~~~~-----------~~k~~qi~a~GA~Vi~v~g-~~d~a~~~a~e 253 (484)
T PLN02569 205 YCAAAGIPSIVFLPADKIS-----------IAQLVQPIANGALVLSIDT-DFDGCMRLIRE 253 (484)
T ss_pred HHHhcCCeEEEEEcCCCCC-----------HHHHHHHHhcCCEEEEECC-CHHHHHHHHHH
Confidence 5667899998888654321 1123456789999999998 45555444444
No 281
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.
Probab=29.04 E-value=2.7e+02 Score=22.27 Aligned_cols=57 Identities=19% Similarity=0.243 Sum_probs=26.9
Q ss_pred cHHHHHHHHHHcCCCE--EEEEEcCCcccccccccccCCccHHHHHhhcCeEEEEEeCCCH
Q 017890 275 DFHAALNFAAVMEAPV--VFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGNDA 333 (364)
Q Consensus 275 ~~~EALn~Aa~~~LPv--IfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~~~~VDGnD~ 333 (364)
.+..+..+|..++.++ ++|+......... ..+...+.+.+.++..+.+...+.+.|+
T Consensus 15 al~~a~~la~~~~~~l~ll~v~~~~~~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 73 (124)
T cd01987 15 LIRRAARLADRLKAPWYVVYVETPRLNRLSE--AERRRLAEALRLAEELGAEVVTLPGDDV 73 (124)
T ss_pred HHHHHHHHHHHhCCCEEEEEEecCccccCCH--HHHHHHHHHHHHHHHcCCEEEEEeCCcH
Confidence 4555566666666665 3333322111100 0011112344556667887776666554
No 282
>PLN02522 ATP citrate (pro-S)-lyase
Probab=28.91 E-value=2.7e+02 Score=30.44 Aligned_cols=88 Identities=16% Similarity=0.077 Sum_probs=53.9
Q ss_pred cCCCeEEEEeCC-CccccccHHHHHHHHHHcCCCEEEEEEcCCcc------cccccccccCCcc------HHHHHhhcCe
Q 017890 257 KKDACAVAYTGD-GGTSEGDFHAALNFAAVMEAPVVFICRNNGWA------ISTNISEQFRSDG------IVVKGRAYGI 323 (364)
Q Consensus 257 ~~~~~vv~~~GD-Ga~~eG~~~EALn~Aa~~~LPvIfVV~NNg~a------is~~~~~~~~~~~------ia~~a~a~G~ 323 (364)
.++-.+|++.|+ |.-.+-.|.|++.-+. .+.|||.++---.-. ...++.. ..+.+ .....+.+|+
T Consensus 220 Dp~Tk~IvlygEiGg~~e~~f~ea~~~a~-~~KPVVa~kaGrsa~~~~~~aa~gHtGA-iag~~~~ta~~k~aAlr~aGv 297 (608)
T PLN02522 220 IPQIKMIVVLGELGGRDEYSLVEALKQGK-VSKPVVAWVSGTCARLFKSEVQFGHAGA-KSGGDMESAQAKNKALKDAGA 297 (608)
T ss_pred CCCCCEEEEEEecCchhHHHHHHHHHHhc-CCCCEEEEeccCCCccCccccccccccc-cccCCCccHHHHHHHHHHCCC
Confidence 466789999999 8888766766554433 567998887432210 0011111 11122 3345566787
Q ss_pred EEEEEeCCCHHHHHHHHHHHHHHhhcC
Q 017890 324 RSIRVDGNDALAVYTAVQAAREMAISE 350 (364)
Q Consensus 324 ~~~~VDGnD~~av~~a~~~A~~~ar~~ 350 (364)
... + +++++.++++++.+...+.
T Consensus 298 ~vv--~--s~~El~~~~~~~~~~~~~~ 320 (608)
T PLN02522 298 IVP--T--SFEALEAAIKETFEKLVEE 320 (608)
T ss_pred eEe--C--CHHHHHHHHHHHHHHHHhC
Confidence 554 4 8999999999988765543
No 283
>cd01450 vWFA_subfamily_ECM Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A
Probab=28.46 E-value=2.5e+02 Score=23.23 Aligned_cols=39 Identities=15% Similarity=0.083 Sum_probs=27.6
Q ss_pred CCCeEEEEeCCCccccc-cHHHHHHHHHHcCCCEEEEEEc
Q 017890 258 KDACAVAYTGDGGTSEG-DFHAALNFAAVMEAPVVFICRN 296 (364)
Q Consensus 258 ~~~~vv~~~GDGa~~eG-~~~EALn~Aa~~~LPvIfVV~N 296 (364)
..+.+++++.||.-..+ +..+.+......+++++.|...
T Consensus 102 ~~~~~iiliTDG~~~~~~~~~~~~~~~~~~~v~v~~i~~g 141 (161)
T cd01450 102 NVPKVIIVLTDGRSDDGGDPKEAAAKLKDEGIKVFVVGVG 141 (161)
T ss_pred CCCeEEEEECCCCCCCCcchHHHHHHHHHCCCEEEEEecc
Confidence 45679999999987654 3666676767777777666543
No 284
>PF03646 FlaG: FlaG protein; InterPro: IPR005186 Although these proteins are known to be important for flagellar their exact function is unknown.; PDB: 2HC5_A.
Probab=28.44 E-value=59 Score=26.69 Aligned_cols=33 Identities=24% Similarity=0.439 Sum_probs=24.5
Q ss_pred CCCeeEEecCC-CCcccCCCCCCCCHHHHHHHHHHHHHH
Q 017890 105 RVPCFRVLDDN-GELIKGSDFQQVSKEVAVKMYSHMVTL 142 (364)
Q Consensus 105 ~~~~~rv~~~~-g~~~~~~~~~~~s~e~l~~ly~~M~~~ 142 (364)
...+++|+|.+ |++|. .++.|++++|++.|.-+
T Consensus 66 ~~~vVkViD~~T~eVIR-----qIP~Ee~l~l~~~l~e~ 99 (107)
T PF03646_consen 66 GRVVVKVIDKETGEVIR-----QIPPEELLDLAKRLREL 99 (107)
T ss_dssp TEEEEEEEETTT-SEEE-----EE-HHHHHHHHHHHHHH
T ss_pred CcEEEEEEECCCCcEEE-----eCCcHHHHHHHHHHHHH
Confidence 45789999986 67665 59999999999887653
No 285
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]
Probab=28.35 E-value=6.5e+02 Score=27.78 Aligned_cols=156 Identities=22% Similarity=0.202 Sum_probs=81.9
Q ss_pred CCchhHHHHHHHhhcCCCcEEEccCCchhHHHhcCCCHHHHHHHHhcCCCCCCCCCCCccccCCCcccccccCC-Ccccc
Q 017890 164 TIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISS-PIATQ 242 (364)
Q Consensus 164 ~~GqEa~~vg~a~aL~~~D~v~~~yR~~g~ll~rG~~~~~~l~~~~g~~~~~~~Gr~mp~H~~~~~~~~~~~sg-~LG~~ 242 (364)
..|+||+.-| ||..+=-++..|| |-|..+++.++..- ...+. +++.-+| .=-..
T Consensus 16 llGneAi~r~---Ale~gV~~~aGYp--------GtPstei~e~la~~------~~~l~--------~vy~e~s~NEkvA 70 (640)
T COG4231 16 LLGNEAIARG---ALEAGVGVAAGYP--------GTPSTELIETLAKA------KKILG--------DVYFEWSLNEKVA 70 (640)
T ss_pred hccHHHHHHH---HHhcCceEEeccC--------CCCcHHHHHHHHHh------hhhcC--------cEEEEecccHHHH
Confidence 5899999754 4555555666675 56677888776532 11110 1221111 11122
Q ss_pred hhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCC--CEEEEEEcC-CcccccccccccCCccHHHHHh
Q 017890 243 LPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEA--PVVFICRNN-GWAISTNISEQFRSDGIVVKGR 319 (364)
Q Consensus 243 lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~L--PvIfVV~NN-g~ais~~~~~~~~~~~ia~~a~ 319 (364)
+-.|.|++++- .+.++++=-=.+ ......|..++..+. .+|+|+-++ +-..|.. +| |---.++
T Consensus 71 ~e~a~GA~~~G------~ral~~mKhVGl--NvAsDpl~s~ay~Gv~GGlviv~aDDpg~~SSqn--eq----dsr~y~~ 136 (640)
T COG4231 71 LETAAGASYAG------VRALVTMKHVGL--NVASDPLMSLAYAGVTGGLVIVVADDPGMHSSQN--EQ----DSRAYGK 136 (640)
T ss_pred HHHHHHhhhcC------ceeeEEeccccc--ccchhhhhhhhhcCccccEEEEEccCCCcccccc--hh----HhHHHHH
Confidence 34566666542 222332211111 111222334444444 344444333 3333322 11 1112344
Q ss_pred hcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEe
Q 017890 320 AYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRL 360 (364)
Q Consensus 320 a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T 360 (364)
...++++. =-|+.+.++.++.|.+.-++.+-|+++-+.|
T Consensus 137 ~a~iPvLe--P~d~Qea~d~~~~afelSe~~~~pVilr~tt 175 (640)
T COG4231 137 FALIPVLE--PSDPQEAYDYVKYAFELSEKSGLPVILRTTT 175 (640)
T ss_pred hcCceeec--CCChHHHHHHHHHHHHHHHHhCCCEEEEEEe
Confidence 45677764 4489999999999999999999999998766
No 286
>PRK13938 phosphoheptose isomerase; Provisional
Probab=27.68 E-value=1.5e+02 Score=27.28 Aligned_cols=42 Identities=17% Similarity=0.178 Sum_probs=35.6
Q ss_pred hccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCC
Q 017890 255 MEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNG 298 (364)
Q Consensus 255 ~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg 298 (364)
..+++.++|++..-|...+ .-+++..|...++|+|.|..|.+
T Consensus 110 ~~~~~DllI~iS~SG~t~~--vi~a~~~Ak~~G~~vI~iT~~~~ 151 (196)
T PRK13938 110 SARPGDTLFAISTSGNSMS--VLRAAKTARELGVTVVAMTGESG 151 (196)
T ss_pred cCCCCCEEEEEcCCCCCHH--HHHHHHHHHHCCCEEEEEeCCCC
Confidence 3467788999999898874 78999999999999999998765
No 287
>TIGR00441 gmhA phosphoheptose isomerase. Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.
Probab=27.64 E-value=1.1e+02 Score=26.73 Aligned_cols=40 Identities=13% Similarity=0.223 Sum_probs=34.1
Q ss_pred cCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCC
Q 017890 257 KKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNG 298 (364)
Q Consensus 257 ~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg 298 (364)
+++.+++++..-|... +..+++..|...+.|+|.|..|.+
T Consensus 78 ~~~D~~i~iS~sG~t~--~~~~~~~~a~~~g~~ii~iT~~~~ 117 (154)
T TIGR00441 78 QKGDVLLGISTSGNSK--NVLKAIEAAKDKGMKTITLAGKDG 117 (154)
T ss_pred CCCCEEEEEcCCCCCH--HHHHHHHHHHHCCCEEEEEeCCCC
Confidence 5677899999888876 488999999999999999998654
No 288
>cd06447 D-Ser-dehyd D-Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- or D-serine to pyruvate and ammonia. D-serine dehydratase serves as a detoxifying enzyme in most E. coli strains where D-serine is a competitive antagonist of beta-alanine in the biosynthetic pathway to pentothenate and coenzyme A. D-serine dehydratase is different from other pyridoxal-5'-phosphate-dependent enzymes in that it catalyzes alpha, beta-elimination reactions on amino acids.
Probab=27.59 E-value=2.1e+02 Score=29.52 Aligned_cols=40 Identities=13% Similarity=0.120 Sum_probs=22.1
Q ss_pred HHHHH-HHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhcCeEEEEEeC
Q 017890 279 ALNFA-AVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDG 330 (364)
Q Consensus 279 ALn~A-a~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~~~~VDG 330 (364)
++.++ +..++|+++++-.+- ...-.+..++||.+++.+++
T Consensus 148 alA~~a~~~G~~~~IvvP~~~------------~~~K~~~ira~GAeVv~v~~ 188 (404)
T cd06447 148 SIGIMAAALGFKVTVHMSADA------------KQWKKDKLRSKGVTVVEYET 188 (404)
T ss_pred HHHHHHHHcCCCEEEEECCCC------------cHHHHHHHHHCCCEEEEECC
Confidence 34433 356777776665431 11223455667777777765
No 289
>PF05014 Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransferase; InterPro: IPR007710 Nucleoside 2-deoxyribosyltransferase (2.4.2.6 from EC) catalyses the cleavage of the glycosidic bonds of 2-deoxyribonucleosides. Nucleoside 2-deoxyribosyltransferases can be divided into two groups based on their substrate specificity: class I enzymes are specific for the transfer of deoxyribose between two purines, while class II enzymes will transfer the deoxyribose between either purines or pyrimidines. The structure of the class I [] and class II [] enzymes are very similar. In class I enzymes, the purine base shields the active site from solvent, which the smaller pyrimidine base cannot do, while in class II enzymes the active site is shielded by a loop (residues 48-62). Both classes of enzymes are found in various Lactobacillus species and participate in nucleoside recycling in these microorganisms. This entry represents both classes of enzymes.; GO: 0050144 nucleoside deoxyribosyltransferase activity, 0070694 deoxyribonucleoside 5'-monophosphate N-glycosidase activity, 0009159 deoxyribonucleoside monophosphate catabolic process; PDB: 1S2L_A 1S2D_C 1S2I_A 1S3F_B 1S2G_C 2A0K_A 2F67_A 2F64_B 2F62_A 2F2T_A ....
Probab=27.31 E-value=1e+02 Score=25.20 Aligned_cols=40 Identities=15% Similarity=0.218 Sum_probs=28.7
Q ss_pred CCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCc
Q 017890 259 DACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGW 299 (364)
Q Consensus 259 ~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ 299 (364)
...+|+.+.+-....|..+| +-+|...+.||+.++.+...
T Consensus 62 ~D~via~l~~~~~d~Gt~~E-lG~A~algkpv~~~~~d~~~ 101 (113)
T PF05014_consen 62 CDIVIANLDGFRPDSGTAFE-LGYAYALGKPVILLTEDDRP 101 (113)
T ss_dssp SSEEEEEECSSS--HHHHHH-HHHHHHTTSEEEEEECCCCT
T ss_pred CCEEEEECCCCCCCCcHHHH-HHHHHHCCCEEEEEEcCCcc
Confidence 34566666554577788888 88999999999999887664
No 290
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=27.15 E-value=2.3e+02 Score=24.93 Aligned_cols=40 Identities=28% Similarity=0.283 Sum_probs=32.5
Q ss_pred cCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCC
Q 017890 257 KKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNG 298 (364)
Q Consensus 257 ~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg 298 (364)
+++.++|++.--|... +.-+++..|...+.|+|.|..|..
T Consensus 71 ~~~Dv~I~iS~sG~t~--~~i~~~~~ak~~g~~ii~IT~~~~ 110 (179)
T TIGR03127 71 KKGDLLIAISGSGETE--SLVTVAKKAKEIGATVAAITTNPE 110 (179)
T ss_pred CCCCEEEEEeCCCCcH--HHHHHHHHHHHCCCeEEEEECCCC
Confidence 4566788888777776 477889999999999999998765
No 291
>PRK12391 tryptophan synthase subunit beta; Reviewed
Probab=26.76 E-value=6e+02 Score=26.36 Aligned_cols=71 Identities=21% Similarity=0.190 Sum_probs=38.3
Q ss_pred HHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHH-HcCCCEEEEEEcCCcccccccccccCCccHHHHHhhcCeE
Q 017890 246 AVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAA-VMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIR 324 (364)
Q Consensus 246 AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa-~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~ 324 (364)
|+..++.++..+.. .+++-.|. |.+--++.+|+ ..++++++++-...+..+ +.-....+.||.+
T Consensus 114 A~~~a~~a~~~G~~-~~vtetgs-----GN~G~alA~aaa~~Gl~~~V~mp~~s~~~k---------~~r~~~mr~~GA~ 178 (427)
T PRK12391 114 AVAQAYYNKKEGIK-RLTTETGA-----GQWGSALALACALFGLECTVFMVRVSYEQK---------PYRRSLMETYGAE 178 (427)
T ss_pred HHHHHHHHHHCCCC-EEEEccCc-----hHHHHHHHHHHHHcCCcEEEEEecCCcccC---------HHHHHHHHHCCCE
Confidence 45555544544433 33332332 33444566554 678988666653222111 1122467889999
Q ss_pred EEEEeCC
Q 017890 325 SIRVDGN 331 (364)
Q Consensus 325 ~~~VDGn 331 (364)
++.+++.
T Consensus 179 Vi~~~~~ 185 (427)
T PRK12391 179 VIPSPSD 185 (427)
T ss_pred EEEECCc
Confidence 9999864
No 292
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=26.60 E-value=1.7e+02 Score=30.10 Aligned_cols=29 Identities=17% Similarity=0.202 Sum_probs=16.5
Q ss_pred cHHHHHhhcCeEEEEEeC-----CCHHHHHHHHH
Q 017890 313 GIVVKGRAYGIRSIRVDG-----NDALAVYTAVQ 341 (364)
Q Consensus 313 ~ia~~a~a~G~~~~~VDG-----nD~~av~~a~~ 341 (364)
.+++.++.||.++..++- -|+++|.++++
T Consensus 94 R~~~ia~~~g~~v~~~~~~wg~~v~p~~v~~~L~ 127 (383)
T COG0075 94 RFAEIAERYGAEVVVLEVEWGEAVDPEEVEEALD 127 (383)
T ss_pred HHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHh
Confidence 456666666666666542 25555555554
No 293
>TIGR01204 bioW 6-carboxyhexanoate--CoA ligase. Alternate name: pimeloyl-CoA synthase.
Probab=26.28 E-value=2e+02 Score=27.70 Aligned_cols=74 Identities=24% Similarity=0.331 Sum_probs=44.2
Q ss_pred cHHHHHHHHHH-cCCC-EE-EEEE--cCCcccc-cccc--cccCCccHHHHHhhcCeEEEEEeC-CCHHHHHHHHHHHHH
Q 017890 275 DFHAALNFAAV-MEAP-VV-FICR--NNGWAIS-TNIS--EQFRSDGIVVKGRAYGIRSIRVDG-NDALAVYTAVQAARE 345 (364)
Q Consensus 275 ~~~EALn~Aa~-~~LP-vI-fVV~--NNg~ais-~~~~--~~~~~~~ia~~a~a~G~~~~~VDG-nD~~av~~a~~~A~~ 345 (364)
.+.|||.+|.. ..+| || =+|. |-.|-.. +.+. ...+-..+...+.-.|.+++-|++ .|+.++++-+
T Consensus 150 r~~eAlaLAsKV~~~pgvvAElC~SDDP~YtTGYVA~~~~gY~RI~~lK~~G~~~GGRvffv~~~~~l~~~i~yL----- 224 (232)
T TIGR01204 150 RTVEALALAFKVLFCPAVVAELCWSDDPDYVTGYVSGKEIGYVRITPLKEKGDELGGRVFFVSRKNELSEYIHCL----- 224 (232)
T ss_pred HHHHHHHHHHHHhcCCCeEEEEEecCCCCCeeEEEEeCCCCeEeCccccccCCCCCCEEEEEeCCCCHHHHHHHH-----
Confidence 58999999985 4566 43 2343 4345211 0111 123344555566668999999998 4666655444
Q ss_pred HhhcCCCcEEEE
Q 017890 346 MAISEKRPVLVE 357 (364)
Q Consensus 346 ~ar~~~~P~LIe 357 (364)
.++|+||+
T Consensus 225 ----E~~pvLI~ 232 (232)
T TIGR01204 225 ----EQKPILIE 232 (232)
T ss_pred ----hcCcEEeC
Confidence 25799984
No 294
>TIGR00315 cdhB CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit. Nomenclature follows the description for Methanosarcina thermophila. The complex is also found in Archaeoglobus fulgidus, not considered a methanogen, but is otherwise generally associated with methanogenesis.
Probab=26.24 E-value=1e+02 Score=27.76 Aligned_cols=39 Identities=13% Similarity=0.228 Sum_probs=30.5
Q ss_pred CCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEc
Q 017890 258 KDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRN 296 (364)
Q Consensus 258 ~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~N 296 (364)
..++.+.++|-|+...+...+...+|...++||+.-...
T Consensus 26 ~AKRPvIivG~ga~~~~a~e~l~~laEklgiPVvtT~~~ 64 (162)
T TIGR00315 26 RAKRPLLIVGPENLEDEEKELIVKFIEKFDLPVVATADT 64 (162)
T ss_pred cCCCcEEEECCCcCcccHHHHHHHHHHHHCCCEEEcCcc
Confidence 345688889999987777778888999999999765543
No 295
>TIGR01138 cysM cysteine synthase B. Alternate name: O-acetylserine (thiol)-lyase
Probab=25.96 E-value=5.1e+02 Score=25.03 Aligned_cols=46 Identities=24% Similarity=0.208 Sum_probs=29.4
Q ss_pred ccHHHHHHHH-HHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhcCeEEEEEeCC
Q 017890 274 GDFHAALNFA-AVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGN 331 (364)
Q Consensus 274 G~~~EALn~A-a~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~~~~VDGn 331 (364)
|..--++.++ +.+++|+++++..+-- ..-.+..+.||.+++.|++.
T Consensus 68 GN~g~alA~~a~~~G~~~~i~~p~~~~------------~~k~~~~~~~GA~v~~v~~~ 114 (290)
T TIGR01138 68 GNTGIALAMIAALKGYRMKLLMPDNMS------------QERKAAMRAYGAELILVTKE 114 (290)
T ss_pred ChHHHHHHHHHHHcCCeEEEEECCCCC------------HHHHHHHHHcCCEEEEeCCC
Confidence 4444445544 4688999888865421 11234677899999999863
No 296
>KOG1184 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=25.79 E-value=2.1e+02 Score=30.80 Aligned_cols=95 Identities=17% Similarity=0.141 Sum_probs=47.8
Q ss_pred CCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEc--CCcccccc-cccccCCccHH---HHHhhcCeEEEEE-eCC
Q 017890 259 DACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRN--NGWAISTN-ISEQFRSDGIV---VKGRAYGIRSIRV-DGN 331 (364)
Q Consensus 259 ~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~N--Ng~ais~~-~~~~~~~~~ia---~~a~a~G~~~~~V-DGn 331 (364)
=.+.|+.+|=|+++- .-++.=|=..++|||.||-- -.-+.+.+ .+.-....|+. +.++..-+.+.-+ |++
T Consensus 67 i~a~VtTfgVGeLSA---lNGIAGsYAE~vpVihIVG~Pnt~~q~t~~LLHHTLG~gDF~vf~rm~k~vsc~~a~I~~~e 143 (561)
T KOG1184|consen 67 IGACVTTFGVGELSA---LNGIAGAYAENVPVIHIVGVPNTNDQGTQRLLHHTLGNGDFTVFHRMFKKVTCYTAMINDIE 143 (561)
T ss_pred ceEEEEEeccchhhh---hcccchhhhhcCCEEEEECCCCcccccccchheeecCCCchHHHHHHHHhhhhHHhhhcCHh
Confidence 357888899999872 12233333568999999841 11111111 01111223332 3333333333333 333
Q ss_pred C-HHHHHHHHHHHHHHhhcCCCcEEEEEEe
Q 017890 332 D-ALAVYTAVQAAREMAISEKRPVLVEVRL 360 (364)
Q Consensus 332 D-~~av~~a~~~A~~~ar~~~~P~LIea~T 360 (364)
| ++++.++++.+. +..||+-|++-+
T Consensus 144 ~A~~~ID~aI~~~~----~~~rPVYi~iP~ 169 (561)
T KOG1184|consen 144 DAPEQIDKAIRTAL----KESKPVYIGVPA 169 (561)
T ss_pred hhHHHHHHHHHHHH----HhcCCeEEEeec
Confidence 3 345555555555 468999998754
No 297
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=25.67 E-value=2.4e+02 Score=25.94 Aligned_cols=34 Identities=21% Similarity=0.145 Sum_probs=24.8
Q ss_pred eEEEEeCCC-ccccccHHHHHHHHHHcCCCEEEEE
Q 017890 261 CAVAYTGDG-GTSEGDFHAALNFAAVMEAPVVFIC 294 (364)
Q Consensus 261 ~vv~~~GDG-a~~eG~~~EALn~Aa~~~LPvIfVV 294 (364)
.+|+++|++ +..+|+++++..-++..++.|-+|.
T Consensus 109 rivi~v~S~~~~d~~~i~~~~~~lkk~~I~v~vI~ 143 (187)
T cd01452 109 RIVAFVGSPIEEDEKDLVKLAKRLKKNNVSVDIIN 143 (187)
T ss_pred eEEEEEecCCcCCHHHHHHHHHHHHHcCCeEEEEE
Confidence 666666666 7788888887777777777665544
No 298
>PRK10717 cysteine synthase A; Provisional
Probab=25.62 E-value=3.3e+02 Score=26.71 Aligned_cols=47 Identities=19% Similarity=0.130 Sum_probs=30.8
Q ss_pred cccHHHHHHHH-HHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhcCeEEEEEeCC
Q 017890 273 EGDFHAALNFA-AVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGN 331 (364)
Q Consensus 273 eG~~~EALn~A-a~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~~~~VDGn 331 (364)
.|..--++.++ +.+++|+++|+..+. ...-.++.+.||.+++.+++.
T Consensus 72 sGN~g~alA~~a~~~G~~~~vv~p~~~------------~~~k~~~~~~~GA~V~~~~~~ 119 (330)
T PRK10717 72 AGNTGIGLALVAAARGYKTVIVMPETQ------------SQEKKDLLRALGAELVLVPAA 119 (330)
T ss_pred CcHHHHHHHHHHHHcCCcEEEEeCCCC------------CHHHHHHHHHcCCEEEEeCCc
Confidence 34444455555 468999988886541 122346678899999999874
No 299
>PRK13936 phosphoheptose isomerase; Provisional
Probab=25.52 E-value=1.3e+02 Score=27.52 Aligned_cols=41 Identities=20% Similarity=0.253 Sum_probs=35.0
Q ss_pred ccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCC
Q 017890 256 EKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNG 298 (364)
Q Consensus 256 ~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg 298 (364)
.+++.+++++...|... +..+++..|...++|+|.|..+++
T Consensus 109 ~~~~Dv~i~iS~sG~t~--~~~~~~~~ak~~g~~iI~IT~~~~ 149 (197)
T PRK13936 109 GQPGDVLLAISTSGNSA--NVIQAIQAAHEREMHVVALTGRDG 149 (197)
T ss_pred CCCCCEEEEEeCCCCcH--HHHHHHHHHHHCCCeEEEEECCCC
Confidence 35778899999999876 488999999999999999998764
No 300
>PRK07328 histidinol-phosphatase; Provisional
Probab=25.15 E-value=1.7e+02 Score=27.92 Aligned_cols=76 Identities=16% Similarity=0.151 Sum_probs=50.5
Q ss_pred HHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhcCeEEEE-EeCCCHHHHHHHHHHHHHHhhcCCCcE
Q 017890 276 FHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIR-VDGNDALAVYTAVQAAREMAISEKRPV 354 (364)
Q Consensus 276 ~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~~~~-VDGnD~~av~~a~~~A~~~ar~~~~P~ 354 (364)
+.+.+..++..+..+ =|+.+++. .+..+.++...+.++++.+|++... -|.|++.+|-..+.+|.+.+++-+=+.
T Consensus 179 ~~~il~~~~~~g~~l--EiNt~~~r--~~~~~~yp~~~il~~~~~~g~~itigSDAH~~~~vg~~~~~a~~~l~~~G~~~ 254 (269)
T PRK07328 179 YEEALDVIAAAGLAL--EVNTAGLR--KPVGEIYPSPALLRACRERGIPVVLGSDAHRPEEVGFGFAEALALLKEVGYTE 254 (269)
T ss_pred HHHHHHHHHHcCCEE--EEEchhhc--CCCCCCCCCHHHHHHHHHcCCCEEEeCCCCCHHHHhccHHHHHHHHHHcCCcE
Confidence 456666666666432 23333332 2233456777899999999998442 388999999888888888887766444
Q ss_pred E
Q 017890 355 L 355 (364)
Q Consensus 355 L 355 (364)
+
T Consensus 255 ~ 255 (269)
T PRK07328 255 T 255 (269)
T ss_pred E
Confidence 3
No 301
>TIGR00239 2oxo_dh_E1 2-oxoglutarate dehydrogenase, E1 component. The E1 ortholog from Corynebacterium glutamicum is unusual in having an N-terminal extension that resembles the dihydrolipoamide succinyltransferase (E2) component of 2-oxoglutarate dehydrogenase.
Probab=25.08 E-value=5.9e+02 Score=29.45 Aligned_cols=105 Identities=13% Similarity=0.113 Sum_probs=56.0
Q ss_pred hhHHHHHHHHhhhccCCCeEE--EEeCCCccc-cccHHHHHHH-HHHcCC--CEEEEEEcCCcccccccccccCCccHHH
Q 017890 243 LPQAVGVAYSLKMEKKDACAV--AYTGDGGTS-EGDFHAALNF-AAVMEA--PVVFICRNNGWAISTNISEQFRSDGIVV 316 (364)
Q Consensus 243 lp~AvG~A~A~k~~~~~~~vv--~~~GDGa~~-eG~~~EALn~-Aa~~~L--PvIfVV~NNg~ais~~~~~~~~~~~ia~ 316 (364)
++.++|+|+ .+++.++| .-+||=+.. +=.+.+=++. ++.|+. ++|+. .-.||....+.+..-+.+.+..
T Consensus 660 ~G~~~G~a~----~g~~~l~i~E~qfgDF~~~AQv~~Dq~i~~~~~K~~~~sglv~~-~p~G~~g~g~~hsS~~~E~~lq 734 (929)
T TIGR00239 660 LGFEYGYAT----TSPRTLVIWEAQFGDFANGAQVVIDQFISSGEQKWGQMSGLVML-LPHGYEGQGPEHSSGRLERFLQ 734 (929)
T ss_pred HHHHHhHHh----cCCCCceEEEEeccchhcchHHHHHHHHHHHHHHhcCccCeEEE-ecCcCCCCCchhhccCHHHHHH
Confidence 455555555 45656534 445554431 1113333555 466654 65544 4445665555433323333333
Q ss_pred HHhhcCeEEEEEeCCCHHHHHHHHH-HHHHHhhcCCCcEEEE
Q 017890 317 KGRAYGIRSIRVDGNDALAVYTAVQ-AAREMAISEKRPVLVE 357 (364)
Q Consensus 317 ~a~a~G~~~~~VDGnD~~av~~a~~-~A~~~ar~~~~P~LIe 357 (364)
.+.--||.++... .+.+.+-.++ .|+. ..++|+++-
T Consensus 735 l~~~~gl~Vv~ps--tpad~~~lLrrqa~r---~~~~Pvi~~ 771 (929)
T TIGR00239 735 LAAEQNMQVCVPT--TPAQVFHILRRQALR---GMRRPLVVM 771 (929)
T ss_pred HhCCCCCEEEecC--CHHHHHHHHHHHHHh---CCCCCEEEe
Confidence 3344588877654 6778888887 4553 347898763
No 302
>TIGR00260 thrC threonine synthase. Involved in threonine biosynthesis it catalyses the reaction O-PHOSPHO-L-HOMOSERINE + H(2)O = L-THREONINE + ORTHOPHOSPHATE using pyridoxal phosphate as a cofactor. the enzyme is distantly related to the serine/threonine dehydratases which are also pyridoxal-phosphate dependent enzymes. the pyridoxal-phosphate binding site is a Lys (K) residues present at residue 70 of the model.
Probab=25.02 E-value=5.4e+02 Score=25.01 Aligned_cols=58 Identities=19% Similarity=0.248 Sum_probs=34.9
Q ss_pred ccHHHHHH-HHHHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHH
Q 017890 274 GDFHAALN-FAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAA 343 (364)
Q Consensus 274 G~~~EALn-~Aa~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A 343 (364)
|+.--|+. +|+..++++++++-.+... ..-....++||.+++.++| +.++..+..++.
T Consensus 80 GN~g~a~A~~a~~~g~~~~v~~p~~~~s-----------~~k~~~~~~~GA~Vi~~~~-~~~~~~~~~~~~ 138 (328)
T TIGR00260 80 GNTGAAAAAYAGKAGVKVVILYPAGKIS-----------LGKLAQALGYNAEVVAIDG-NFDDAQRLVKQL 138 (328)
T ss_pred cHHHHHHHHHhccCCCcEEEEECCCCCC-----------HHHHHHHHhcCcEEEEecC-CHHHHHHHHHHH
Confidence 33333444 5567889998888665321 1122445679999999997 455544444443
No 303
>cd01562 Thr-dehyd Threonine dehydratase: The first step in amino acid degradation is the removal of nitrogen. Although the nitrogen atoms of most amino acids are transferred to alpha-ketoglutarate before removal, the alpha-amino group of threonine can be directly converted into NH4+. The direct deamination is catalyzed by threonine dehydratase, in which pyridoxal phosphate (PLP) is the prosthetic group. Threonine dehydratase is widely distributed in all three major phylogenetic divisions.
Probab=24.80 E-value=3.5e+02 Score=25.84 Aligned_cols=41 Identities=17% Similarity=0.280 Sum_probs=27.3
Q ss_pred HHH-HHHHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhcCeEEEEEeCC
Q 017890 279 ALN-FAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGN 331 (364)
Q Consensus 279 ALn-~Aa~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~~~~VDGn 331 (364)
++. .|+..++++++++..+- + ..-.+..+.||.+++.|+++
T Consensus 79 alA~~a~~~G~~~~ivvp~~~-----~-------~~k~~~l~~~Ga~vi~~~~~ 120 (304)
T cd01562 79 GVAYAAKLLGIPATIVMPETA-----P-------AAKVDATRAYGAEVVLYGED 120 (304)
T ss_pred HHHHHHHHcCCCEEEEECCCC-----C-------HHHHHHHHHcCCEEEEeCCC
Confidence 344 44567889888885442 1 12345678899999999874
No 304
>PRK05638 threonine synthase; Validated
Probab=24.70 E-value=2.9e+02 Score=28.51 Aligned_cols=47 Identities=17% Similarity=0.327 Sum_probs=30.7
Q ss_pred cccHHHHHH-HHHHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhcCeEEEEEeCC
Q 017890 273 EGDFHAALN-FAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGN 331 (364)
Q Consensus 273 eG~~~EALn-~Aa~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~~~~VDGn 331 (364)
.|+.--++. .|+..++|+++++-.+- + ..-....++||.+++.|+|+
T Consensus 120 sGN~g~alA~~aa~~G~~~~i~vp~~~---~---------~~k~~~~~~~GA~vi~v~~~ 167 (442)
T PRK05638 120 DGNAAASVAAYSARAGKEAFVVVPRKV---D---------KGKLIQMIAFGAKIIRYGES 167 (442)
T ss_pred CChHHHHHHHHHHHcCCCEEEEEeCCC---C---------HHHHHHHHhcCcEEEEECCC
Confidence 344444554 45678999988886541 1 12234677899999999874
No 305
>TIGR01275 ACC_deam_rel pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family. This model represents a family of pyridoxal phosphate-dependent enzymes closely related to (and often designated as putative examples of) 1-aminocyclopropane-1-carboxylate deaminase. It appears that members of this family include both D-cysteine desulfhydrase (EC 4.4.1.15) and 1-aminocyclopropane-1-carboxylate deaminase (EC 3.5.99.7).
Probab=24.67 E-value=5.1e+02 Score=25.02 Aligned_cols=45 Identities=13% Similarity=0.167 Sum_probs=23.7
Q ss_pred cHHHHHHHH-HHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhcCeEEEEEeC
Q 017890 275 DFHAALNFA-AVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDG 330 (364)
Q Consensus 275 ~~~EALn~A-a~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~~~~VDG 330 (364)
..--++.++ +..++++++++..+.- ...-....++||.+++.|++
T Consensus 68 N~g~alA~~a~~~G~~~~ivvp~~~~-----------~~~~~~~~~~~Ga~v~~v~~ 113 (311)
T TIGR01275 68 NHARATALAAKKLGLDAVLVLREKEE-----------LNGNLLLDKLMGAETRVYSA 113 (311)
T ss_pred HHHHHHHHHHHHhCCceEEEecCCcc-----------CCCCHHHHHHcCCEEEEECc
Confidence 333445544 4577888877765310 00111223567777777764
No 306
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=24.52 E-value=2.1e+02 Score=26.02 Aligned_cols=41 Identities=12% Similarity=0.255 Sum_probs=35.1
Q ss_pred ccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCC
Q 017890 256 EKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNG 298 (364)
Q Consensus 256 ~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg 298 (364)
..++.+++++...|... +..+++..|...++|+|.|..|++
T Consensus 109 ~~~~Dv~I~iS~SG~t~--~~i~~~~~ak~~g~~iI~iT~~~~ 149 (192)
T PRK00414 109 GREGDVLLGISTSGNSG--NIIKAIEAARAKGMKVITLTGKDG 149 (192)
T ss_pred CCCCCEEEEEeCCCCCH--HHHHHHHHHHHCCCeEEEEeCCCC
Confidence 35778899999999887 478999999999999999998764
No 307
>COG0498 ThrC Threonine synthase [Amino acid transport and metabolism]
Probab=24.28 E-value=2.6e+02 Score=28.99 Aligned_cols=69 Identities=22% Similarity=0.221 Sum_probs=43.4
Q ss_pred CCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhcCeEEEEEeCCCHHHHHH
Q 017890 259 DACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYT 338 (364)
Q Consensus 259 ~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~~~~VDGnD~~av~~ 338 (364)
+.++.+..||-+. .+-.+|++.++.+++++=+++.+.. -...+..+|.+++.|+|+ .++..+
T Consensus 127 ~~I~~ASSGnTgA------s~aaya~rag~~v~Vl~P~g~vs~~-----------k~~q~~~~ga~~i~v~G~-fDda~~ 188 (411)
T COG0498 127 KTILCASSGNTGA------SAAAYAARAGLKVFVLYPKGKVSPG-----------KLAQMLTLGAHVIAVDGN-FDDAQE 188 (411)
T ss_pred CEEEEeCCchHHH------HHHHHhccCCCeEEEEecCCCCCHH-----------HHHHHHhcCCEEEEEcCc-HHHHHH
Confidence 4455555555442 2345778888888888766543221 113355688899999994 667777
Q ss_pred HHHHHHH
Q 017890 339 AVQAARE 345 (364)
Q Consensus 339 a~~~A~~ 345 (364)
.++++.+
T Consensus 189 ~vk~~~~ 195 (411)
T COG0498 189 LVKEAAN 195 (411)
T ss_pred HHHHHHh
Confidence 7777665
No 308
>cd01467 vWA_BatA_type VWA BatA type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses. In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=24.27 E-value=2.8e+02 Score=23.91 Aligned_cols=39 Identities=15% Similarity=0.158 Sum_probs=25.7
Q ss_pred CCeEEEEeCCCcccccc--HHHHHHHHHHcCCCEEEEEEcC
Q 017890 259 DACAVAYTGDGGTSEGD--FHAALNFAAVMEAPVVFICRNN 297 (364)
Q Consensus 259 ~~~vv~~~GDGa~~eG~--~~EALn~Aa~~~LPvIfVV~NN 297 (364)
.+.+|+++.||....|. ..++...+...+++|..|-.-+
T Consensus 102 ~~~~iiliTDG~~~~g~~~~~~~~~~~~~~gi~i~~i~ig~ 142 (180)
T cd01467 102 KERVIVLLTDGENNAGEIDPATAAELAKNKGVRIYTIGVGK 142 (180)
T ss_pred CCCEEEEEeCCCCCCCCCCHHHHHHHHHHCCCEEEEEEecC
Confidence 34789999999877663 3355556666777775554433
No 309
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=24.03 E-value=3.2e+02 Score=29.80 Aligned_cols=62 Identities=21% Similarity=0.110 Sum_probs=33.5
Q ss_pred CCCeEEEEeCCCccccc-----cHHHHHHHHHH---cCCCEEEEEEcCCcccccccccccCCccHHHHHhhcCeEEEEE
Q 017890 258 KDACAVAYTGDGGTSEG-----DFHAALNFAAV---MEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRV 328 (364)
Q Consensus 258 ~~~~vv~~~GDGa~~eG-----~~~EALn~Aa~---~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~~~~V 328 (364)
..+.+|+++.||..+.+ ...+++..|.. .++++++|-..++ .....-..+.|+..|..++.+
T Consensus 563 ~~~~~vvliTDG~~n~~~~~~~~~~~~~~~a~~l~~~~i~~~vIdt~~~---------~~~~~~~~~lA~~~gg~y~~l 632 (633)
T TIGR02442 563 DGRPLLVVITDGRANVADGGEPPTDDARTIAAKLAARGILFVVIDTESG---------FVRLGLAEDLARALGGEYVRL 632 (633)
T ss_pred CCceEEEEECCCCCCCCCCCCChHHHHHHHHHHHHhcCCeEEEEeCCCC---------CcchhHHHHHHHhhCCeEEec
Confidence 35688999999998653 23444444444 3445544421111 011122445677777777654
No 310
>cd00032 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues; Cysteine-dependent aspartate-directed proteases that mediate programmed cell death (apoptosis). Caspases are synthesized as inactive zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologs.
Probab=23.95 E-value=2.4e+02 Score=26.55 Aligned_cols=57 Identities=7% Similarity=0.058 Sum_probs=38.9
Q ss_pred CEEEEEEcCCcccccccc--cccCCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHH
Q 017890 289 PVVFICRNNGWAISTNIS--EQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAARE 345 (364)
Q Consensus 289 PvIfVV~NNg~ais~~~~--~~~~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~ 345 (364)
.+.+||.|..|.-..+.. .......+++..+.+|+.+....--+..++.+++++..+
T Consensus 10 g~aLII~n~~f~~~~~~r~g~~~D~~~l~~~f~~lgF~V~~~~nlt~~~~~~~l~~f~~ 68 (243)
T cd00032 10 GLALIINNENFDKGLKDRDGTDVDAENLTKLFESLGYEVEVKNNLTAEEILEELKEFAS 68 (243)
T ss_pred CEEEEEechhcCCCCCCCCChHHHHHHHHHHHHHCCCEEEEeCCCCHHHHHHHHHHHHh
Confidence 466777777775311111 112234677888999999998877788999999988764
No 311
>PF08806 Sep15_SelM: Sep15/SelM redox domain; InterPro: IPR014912 Sep15 and SelM are eukaryotic selenoproteins that have a thioredoxin-like domain and a surface accessible active site redox motif []. This suggests that they function as thiol-disulphide isomerases involved in disulphide bond formation in the endoplasmic reticulum []. ; PDB: 2A4H_A 2A2P_A.
Probab=23.89 E-value=50 Score=26.17 Aligned_cols=33 Identities=15% Similarity=0.338 Sum_probs=22.3
Q ss_pred CCeeEEecCCCCcccCCCCCCCCHHHHHHHHHH
Q 017890 106 VPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSH 138 (364)
Q Consensus 106 ~~~~rv~~~~g~~~~~~~~~~~s~e~l~~ly~~ 138 (364)
-|...++|.+|+.++.-...+.+.|++.+++..
T Consensus 42 ~P~L~l~d~~g~~~E~i~i~~w~~d~i~efL~~ 74 (78)
T PF08806_consen 42 PPELVLLDEDGEEVERINIEKWKTDEIEEFLNE 74 (78)
T ss_dssp --EEEEE-SSS--SEEEE-SSSSHCHHHHHHHH
T ss_pred CCEEEEEcCCCCEEEEEEcccCCHHHHHHHHHH
Confidence 489999999999877666678899998887753
No 312
>TIGR03186 AKGDH_not_PDH alpha-ketoglutarate dehydrogenase. Several bacterial species have a paralog to homodimeric form of the pyruvate dehydrogenase E1 component (see model TIGR00759), often encoded next to L-methionine gamma-lyase gene (mdeA). The member from a strain of Pseudomonas putida was shown to act on alpha-ketobutyrate, which is produced by MdeA.This model serves as an exception model to TIGR00759, as other proteins hitting TIGR00759 should be identified as the pyruvate dehydrogenase E1 component.
Probab=23.72 E-value=6.2e+02 Score=29.11 Aligned_cols=109 Identities=13% Similarity=-0.006 Sum_probs=62.3
Q ss_pred HHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCc-ccccccccccCCccHHHHHhhcCe
Q 017890 245 QAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGW-AISTNISEQFRSDGIVVKGRAYGI 323 (364)
Q Consensus 245 ~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~-ais~~~~~~~~~~~ia~~a~a~G~ 323 (364)
+|+|.|++.. +...++++ +.=..|...-.+|-+..++..++++.+|.-.-|. ............++++-...--|+
T Consensus 577 iAAGlA~a~~--G~g~iPf~-~tya~F~~~Ra~Dqir~a~~~~a~v~lvG~~aG~tTlg~eG~tHq~~eDial~r~iPn~ 653 (889)
T TIGR03186 577 IAAATSYSVH--DLPMLPFY-IYYSMFGFQRIGDLIWAAADQRARGFLIGATSGKTTLGGEGLQHQDGTSHLAASTVPNC 653 (889)
T ss_pred HHHHHhhhhc--CCCceEEE-EehHHhHhhhHHHHHHHHhhcCCCcEEEEECCCccCCCCCcccccchHhHHHHhhCCCC
Confidence 5777777642 22223332 2233454446778888888888999999887775 333222222233444332222344
Q ss_pred EEEEEeCCCHHHHHHHHHHHHHHhhcC--CCcEEEEE
Q 017890 324 RSIRVDGNDALAVYTAVQAAREMAISE--KRPVLVEV 358 (364)
Q Consensus 324 ~~~~VDGnD~~av~~a~~~A~~~ar~~--~~P~LIea 358 (364)
.++ +=-|..++..+++.+++++-.. ++|+.|-+
T Consensus 654 tv~--~PaDa~E~a~iv~~~~~rm~~~~~~gp~YlRl 688 (889)
T TIGR03186 654 RAW--DPAFAYEVAVIVDEGMREMLERQRDEFYYLTV 688 (889)
T ss_pred EEE--eCCCHHHHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 444 4447888888888887744443 47776654
No 313
>PF00205 TPP_enzyme_M: Thiamine pyrophosphate enzyme, central domain; InterPro: IPR012000 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This central domain of TPP enzymes contains a 2-fold Rossman fold. ; GO: 0000287 magnesium ion binding, 0030976 thiamine pyrophosphate binding; PDB: 1OZH_C 1OZF_B 1OZG_B 2Q29_B 2Q28_A 2Q27_B 1OVM_B 1PVD_A 1PYD_B 2VK1_C ....
Probab=23.67 E-value=45 Score=28.17 Aligned_cols=34 Identities=21% Similarity=0.281 Sum_probs=27.2
Q ss_pred CCeEEEEeCCCccccccHHHHHHHHHHcCCCEEE
Q 017890 259 DACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVF 292 (364)
Q Consensus 259 ~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIf 292 (364)
.++.+.++|.|....+...|...+|.++++||+-
T Consensus 11 A~rP~il~G~g~~~~~a~~~l~~lae~~~~Pv~~ 44 (137)
T PF00205_consen 11 AKRPVILAGRGARRSGAAEELRELAEKLGIPVAT 44 (137)
T ss_dssp -SSEEEEE-HHHHHTTCHHHHHHHHHHHTSEEEE
T ss_pred CCCEEEEEcCCcChhhHHHHHHHHHHHHCCCEEe
Confidence 3567888999999777888888999999999853
No 314
>cd00198 vWFA Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A domains.
Probab=23.41 E-value=3.2e+02 Score=21.91 Aligned_cols=37 Identities=16% Similarity=0.121 Sum_probs=26.1
Q ss_pred CCCeEEEEeCCCccccc--cHHHHHHHHHHcCCCEEEEE
Q 017890 258 KDACAVAYTGDGGTSEG--DFHAALNFAAVMEAPVVFIC 294 (364)
Q Consensus 258 ~~~~vv~~~GDGa~~eG--~~~EALn~Aa~~~LPvIfVV 294 (364)
.....+++++||....+ ...+.+..+...++.+.+|-
T Consensus 100 ~~~~~lvvitDg~~~~~~~~~~~~~~~~~~~~v~v~~v~ 138 (161)
T cd00198 100 NARRVIILLTDGEPNDGPELLAEAARELRKLGITVYTIG 138 (161)
T ss_pred CCceEEEEEeCCCCCCCcchhHHHHHHHHHcCCEEEEEE
Confidence 35678999999998765 46676777777666664443
No 315
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=23.37 E-value=1.4e+02 Score=27.57 Aligned_cols=40 Identities=15% Similarity=0.257 Sum_probs=34.3
Q ss_pred cCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCC
Q 017890 257 KKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNG 298 (364)
Q Consensus 257 ~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg 298 (364)
.++.+++++.+.|...+ ..+++..|...++|+|.|..+.+
T Consensus 108 ~~gDvli~iS~SG~s~~--v~~a~~~Ak~~G~~vI~IT~~~~ 147 (196)
T PRK10886 108 HAGDVLLAISTRGNSRD--IVKAVEAAVTRDMTIVALTGYDG 147 (196)
T ss_pred CCCCEEEEEeCCCCCHH--HHHHHHHHHHCCCEEEEEeCCCC
Confidence 56778999999999874 88999999999999999987654
No 316
>cd05007 SIS_Etherase N-acetylmuramic acid 6-phosphate etherase. Members of this family contain the SIS (Sugar ISomerase) domain. The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. The bacterial cell wall sugar N-acetylmuramic acid carries a unique D-lactyl ether substituent at the C3 position. The etherase catalyzes the cleavage of the lactyl ether bond of N-acetylmuramic acid 6-phosphate.
Probab=22.99 E-value=1.4e+02 Score=28.54 Aligned_cols=40 Identities=23% Similarity=0.258 Sum_probs=34.7
Q ss_pred cCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCC
Q 017890 257 KKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNG 298 (364)
Q Consensus 257 ~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg 298 (364)
+++.++|.+...|.+.+ +.+++..|...+.|+|.|+.|..
T Consensus 117 ~~~DvvI~IS~SG~T~~--vi~al~~Ak~~Ga~~I~It~~~~ 156 (257)
T cd05007 117 TERDVVIGIAASGRTPY--VLGALRYARARGALTIGIACNPG 156 (257)
T ss_pred CCCCEEEEEeCCCCCHH--HHHHHHHHHHCCCeEEEEECCCC
Confidence 56778999999999874 88999999999999999997764
No 317
>cd06445 ATase The DNA repair protein O6-alkylguanine-DNA alkyltransferase (ATase; also known as AGT, AGAT and MGMT) reverses O6-alkylation DNA damage by transferring O6-alkyl adducts to an active site cysteine irreversibly, without inducing DNA strand breaks. ATases are specific for repair of guanines with O6-alkyl adducts, however human ATase is not limited to O6-methylguanine, repairing many other adducts at the O6-position of guanine as well. ATase is widely distributed among species. Most ATases have N- and C-terminal domains. The C-terminal domain contains the conserved active-site cysteine motif (PCHR), the O6-alkylguanine binding channel, and the helix-turn-helix (HTH) DNA-binding motif. The active site is located near the recognition helix of the HTH motif. While the C-terminal domain of ATase contains residues that are necessary for DNA binding and alkyl transfer, the function of the N-terminal domain is still unknown. Removal of the N-terminal domain abolishes the activity of
Probab=22.96 E-value=1.2e+02 Score=23.57 Aligned_cols=18 Identities=33% Similarity=0.562 Sum_probs=14.9
Q ss_pred CCCCeeEEecCCCCcccC
Q 017890 104 KRVPCFRVLDDNGELIKG 121 (364)
Q Consensus 104 ~~~~~~rv~~~~g~~~~~ 121 (364)
..+||.||++.+|.+...
T Consensus 47 ~~vP~HRVv~~~g~~~~~ 64 (79)
T cd06445 47 ILIPCHRVVRSDGGLGGY 64 (79)
T ss_pred CCCCceeEECCCCCcCCC
Confidence 468999999999988643
No 318
>PRK08329 threonine synthase; Validated
Probab=22.81 E-value=3.1e+02 Score=27.29 Aligned_cols=38 Identities=16% Similarity=0.118 Sum_probs=25.8
Q ss_pred HHHHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhcCeEEEEEeCC
Q 017890 282 FAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGN 331 (364)
Q Consensus 282 ~Aa~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~~~~VDGn 331 (364)
.|+..++++++++-.+- ...-....+.||.+++.|+|.
T Consensus 122 ~aa~~G~~~~v~vp~~~------------~~~k~~~~~~~GA~v~~v~~~ 159 (347)
T PRK08329 122 YSLSEGIKVHVFVSYNA------------SKEKISLLSRLGAELHFVEGD 159 (347)
T ss_pred HHHHcCCcEEEEECCCC------------hHHHHHHHHHcCCEEEEECCC
Confidence 45577999988875431 011224567899999999985
No 319
>PRK01322 6-carboxyhexanoate--CoA ligase; Provisional
Probab=22.68 E-value=2.9e+02 Score=26.75 Aligned_cols=76 Identities=25% Similarity=0.379 Sum_probs=44.9
Q ss_pred cHHHHHHHHHHcC-CC-EE-EEE--EcCCccc---ccccccccCCccHHHHHhhcCeEEEEEeCC-CHHHHHHHHHHHHH
Q 017890 275 DFHAALNFAAVME-AP-VV-FIC--RNNGWAI---STNISEQFRSDGIVVKGRAYGIRSIRVDGN-DALAVYTAVQAARE 345 (364)
Q Consensus 275 ~~~EALn~Aa~~~-LP-vI-fVV--~NNg~ai---s~~~~~~~~~~~ia~~a~a~G~~~~~VDGn-D~~av~~a~~~A~~ 345 (364)
.+.|||.+|..-- .| || =+| +|-.|-. .+..-...+-..+...+.-.|.+++-|++. |++++.+-+
T Consensus 157 r~~eAlaLAsKV~~~pgivAElC~SDDP~YtTGYVA~~~~gY~RI~~mK~~G~~~GGRvffv~~~~~~~~~i~yL----- 231 (242)
T PRK01322 157 RTVDALALASKVIAHPGVIAELCWSDDPDYTTGYVATKKLGYHRITNLKEEGTPYGGRIFFVDDSIDLEELISYL----- 231 (242)
T ss_pred HHHHHHHHHHHHhcCCCeEEEEEecCCCCCeeEEEEeCCCCeEeCccccccCCCCCCEEEEEeCccCHHHHHHHH-----
Confidence 5899999998643 55 43 234 3444521 111101233445666666789999999985 554444333
Q ss_pred HhhcCCCcEEEEEE
Q 017890 346 MAISEKRPVLVEVR 359 (364)
Q Consensus 346 ~ar~~~~P~LIea~ 359 (364)
.++|+||+..
T Consensus 232 ----E~~pVLI~~~ 241 (242)
T PRK01322 232 ----ENKPVLIVYE 241 (242)
T ss_pred ----hcCcEEEEec
Confidence 2589999864
No 320
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=22.39 E-value=3e+02 Score=22.15 Aligned_cols=40 Identities=20% Similarity=0.159 Sum_probs=25.6
Q ss_pred cCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCC
Q 017890 257 KKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNG 298 (364)
Q Consensus 257 ~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg 298 (364)
.++.++|.+.-.|... ...+++..|...+.++|.|..|..
T Consensus 59 ~~~~~~i~iS~~g~~~--~~~~~~~~a~~~g~~iv~iT~~~~ 98 (139)
T cd05013 59 TPGDVVIAISFSGETK--ETVEAAEIAKERGAKVIAITDSAN 98 (139)
T ss_pred CCCCEEEEEeCCCCCH--HHHHHHHHHHHcCCeEEEEcCCCC
Confidence 3455666666666654 355667777777777777766543
No 321
>PLN02618 tryptophan synthase, beta chain
Probab=22.05 E-value=4.1e+02 Score=27.48 Aligned_cols=69 Identities=23% Similarity=0.143 Sum_probs=38.3
Q ss_pred HHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHH-HHHHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhcCeE
Q 017890 246 AVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALN-FAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIR 324 (364)
Q Consensus 246 AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn-~Aa~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~ 324 (364)
+++.++..+..++ ..+|+-.|-|-. --|+. .|+..++++++++-.+. +. .+ ..-..+.+.||.+
T Consensus 107 a~~~~l~A~~~g~-~~vIaesgaGNh-----G~AlA~aaa~~Gl~~~I~m~~~~--~~----~~---~~nv~~mr~lGA~ 171 (410)
T PLN02618 107 AVAQALLAKRLGK-KRIIAETGAGQH-----GVATATVCARFGLECIVYMGAQD--ME----RQ---ALNVFRMRLLGAE 171 (410)
T ss_pred HHHHHHHHHHcCC-CEEEEEcCcHHH-----HHHHHHHHHHcCCcEEEEEcCCc--hh----hh---hhhHHHHHHCCCE
Confidence 4555554454443 446655544432 22333 45678999887775432 11 01 1122467889999
Q ss_pred EEEEe
Q 017890 325 SIRVD 329 (364)
Q Consensus 325 ~~~VD 329 (364)
++.|+
T Consensus 172 Vi~v~ 176 (410)
T PLN02618 172 VRPVH 176 (410)
T ss_pred EEEEe
Confidence 99993
No 322
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=22.02 E-value=1.8e+02 Score=25.85 Aligned_cols=86 Identities=13% Similarity=0.163 Sum_probs=51.7
Q ss_pred CCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccccc-------cc-cCCccHHHHHhhcCeEEEEEe
Q 017890 258 KDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNIS-------EQ-FRSDGIVVKGRAYGIRSIRVD 329 (364)
Q Consensus 258 ~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~-------~~-~~~~~ia~~a~a~G~~~~~VD 329 (364)
....-+.++|-.....+ + -.+....++++.+++.+|...+..-.. +. ..+....+.|+.+|++++.++
T Consensus 75 ~~~~~Iavv~~~~~~~~-~---~~~~~ll~~~i~~~~~~~~~e~~~~i~~~~~~G~~viVGg~~~~~~A~~~gl~~v~i~ 150 (176)
T PF06506_consen 75 KYGPKIAVVGYPNIIPG-L---ESIEELLGVDIKIYPYDSEEEIEAAIKQAKAEGVDVIVGGGVVCRLARKLGLPGVLIE 150 (176)
T ss_dssp CCTSEEEEEEESS-SCC-H---HHHHHHHT-EEEEEEESSHHHHHHHHHHHHHTT--EEEESHHHHHHHHHTTSEEEESS
T ss_pred hcCCcEEEEecccccHH-H---HHHHHHhCCceEEEEECCHHHHHHHHHHHHHcCCcEEECCHHHHHHHHHcCCcEEEEE
Confidence 33355666666666543 2 335566788888777776543221111 01 122345678899999999987
Q ss_pred CCCHHHHHHHHHHHHHHhh
Q 017890 330 GNDALAVYTAVQAAREMAI 348 (364)
Q Consensus 330 GnD~~av~~a~~~A~~~ar 348 (364)
. ..++++.|+.+|++.++
T Consensus 151 s-g~esi~~Al~eA~~i~~ 168 (176)
T PF06506_consen 151 S-GEESIRRALEEALRIAR 168 (176)
T ss_dssp ---HHHHHHHHHHHHHHHH
T ss_pred e-cHHHHHHHHHHHHHHHH
Confidence 4 47899999999986553
No 323
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=21.95 E-value=5.3e+02 Score=25.20 Aligned_cols=53 Identities=11% Similarity=0.110 Sum_probs=33.7
Q ss_pred CCCeEEEEeCCCccccccHHHHHHHHHHc-CC--CEEEEEEcCCcccccccccccCCccHHHHHhhcCeEEEEEe
Q 017890 258 KDACAVAYTGDGGTSEGDFHAALNFAAVM-EA--PVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVD 329 (364)
Q Consensus 258 ~~~~vv~~~GDGa~~eG~~~EALn~Aa~~-~L--PvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~~~~VD 329 (364)
+.+.+|...|.|+. .+||--+... ++ -|+.|+-|+. +....|+.+|++++.++
T Consensus 89 ~~ri~vl~Sg~gsn-----l~al~~~~~~~~~~~~i~~visn~~--------------~~~~lA~~~gIp~~~~~ 144 (286)
T PRK06027 89 RKRVVILVSKEDHC-----LGDLLWRWRSGELPVEIAAVISNHD--------------DLRSLVERFGIPFHHVP 144 (286)
T ss_pred CcEEEEEEcCCCCC-----HHHHHHHHHcCCCCcEEEEEEEcCh--------------hHHHHHHHhCCCEEEec
Confidence 44566766676544 4566655544 23 4666666653 35556888999999875
No 324
>PLN02565 cysteine synthase
Probab=21.91 E-value=2.6e+02 Score=27.67 Aligned_cols=40 Identities=18% Similarity=0.099 Sum_probs=23.7
Q ss_pred HHHHH-HHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhcCeEEEEEeC
Q 017890 279 ALNFA-AVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDG 330 (364)
Q Consensus 279 ALn~A-a~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~~~~VDG 330 (364)
++.++ +..++|+++|+-.+- ...-.+..+.||.+++.++.
T Consensus 81 alA~~a~~~G~~~~ivvp~~~------------~~~k~~~i~~~GA~V~~~~~ 121 (322)
T PLN02565 81 GLAFMAAAKGYKLIITMPASM------------SLERRIILLAFGAELVLTDP 121 (322)
T ss_pred HHHHHHHHcCCeEEEEeCCCC------------cHHHHHHHHHcCCEEEEeCC
Confidence 34444 457788877775541 11223456778888887764
No 325
>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]
Probab=21.77 E-value=2.2e+02 Score=31.83 Aligned_cols=32 Identities=22% Similarity=0.289 Sum_probs=24.2
Q ss_pred eEEEEeCCCccccccHHHHHHHHHHcCCCEEEEE
Q 017890 261 CAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFIC 294 (364)
Q Consensus 261 ~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV 294 (364)
+.++=--||-.. ..+||+.|+..|++|||+=-
T Consensus 160 VpvVPGTpgPit--t~~EA~eF~k~yG~PvI~KA 191 (1176)
T KOG0369|consen 160 VPVVPGTPGPIT--TVEEALEFVKEYGLPVIIKA 191 (1176)
T ss_pred CCccCCCCCCcc--cHHHHHHHHHhcCCcEEEee
Confidence 444444567665 48999999999999998743
No 326
>PRK06110 hypothetical protein; Provisional
Probab=21.30 E-value=4.3e+02 Score=25.89 Aligned_cols=67 Identities=16% Similarity=0.132 Sum_probs=36.7
Q ss_pred cccHHHHHHHH-HHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCC
Q 017890 273 EGDFHAALNFA-AVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEK 351 (364)
Q Consensus 273 eG~~~EALn~A-a~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~ 351 (364)
.|..--++.++ +..++|+++++..|-- ..-.+.-++||.+++.++++ .. ++.+.+.+.+++.
T Consensus 78 sGN~g~alA~~a~~~G~~~~ivvp~~~~------------~~k~~~i~~~GA~V~~~~~~-~~---~~~~~a~~~~~~~- 140 (322)
T PRK06110 78 RGNHGQSVAFAARRHGLAATIVVPHGNS------------VEKNAAMRALGAELIEHGED-FQ---AAREEAARLAAER- 140 (322)
T ss_pred CCHHHHHHHHHHHHcCCCEEEEEcCCCC------------HHHHHHHHHcCCEEEEECCC-HH---HHHHHHHHHHHhc-
Confidence 34444445544 4678898887755421 01124567899999988753 32 2333444444443
Q ss_pred CcEEE
Q 017890 352 RPVLV 356 (364)
Q Consensus 352 ~P~LI 356 (364)
++.++
T Consensus 141 ~~~~~ 145 (322)
T PRK06110 141 GLHMV 145 (322)
T ss_pred CCEEc
Confidence 34444
No 327
>cd01822 Lysophospholipase_L1_like Lysophospholipase L1-like subgroup of SGNH-hydrolases. The best characterized member in this family is TesA, an E. coli periplasmic protein with thioesterase, esterase, arylesterase, protease and lysophospholipase activity.
Probab=20.89 E-value=3.8e+02 Score=22.70 Aligned_cols=15 Identities=20% Similarity=0.319 Sum_probs=7.8
Q ss_pred HHHHHhhcCeEEEEE
Q 017890 314 IVVKGRAYGIRSIRV 328 (364)
Q Consensus 314 ia~~a~a~G~~~~~V 328 (364)
+.++++..+.+++-+
T Consensus 93 li~~~~~~~~~vil~ 107 (177)
T cd01822 93 MIETAQARGAPVLLV 107 (177)
T ss_pred HHHHHHHCCCeEEEE
Confidence 344444456666654
No 328
>PRK08197 threonine synthase; Validated
Probab=20.79 E-value=3.6e+02 Score=27.36 Aligned_cols=38 Identities=16% Similarity=0.119 Sum_probs=26.8
Q ss_pred HHHHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhcCeEEEEEeCC
Q 017890 282 FAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGN 331 (364)
Q Consensus 282 ~Aa~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~~~~VDGn 331 (364)
.|+..++++++++-.+- ...-.+..++||.+++.|+|.
T Consensus 145 ~aa~~G~~~~v~vp~~~------------~~~k~~~~~~~GA~Vi~v~~~ 182 (394)
T PRK08197 145 YAARAGIRATIFMPADA------------PEITRLECALAGAELYLVDGL 182 (394)
T ss_pred HHHHcCCcEEEEEcCCC------------CHHHHHHHHHcCCEEEEECCC
Confidence 44578999988886542 112335678899999999974
No 329
>TIGR02482 PFKA_ATP 6-phosphofructokinase. 6-phosphofructokinase (EC 2.7.1.11) catalyzes the addition of phosphate from ATP to fructose 6-phosphate to give fructose 1,6-bisphosphate. This represents a key control step in glycolysis. This model hits bacterial ATP-dependent 6-phosphofructokinases which lack a beta-hairpin loop present in TIGR02483 family members. TIGR02483 contains members that are ATP-dependent as well as members that are pyrophosphate-dependent. TIGR02477 represents the pyrophosphate-dependent phosphofructokinase, diphosphate--fructose-6-phosphate 1-phosphotransferase (EC 2.7.1.90).
Probab=20.27 E-value=3.1e+02 Score=27.15 Aligned_cols=69 Identities=22% Similarity=0.118 Sum_probs=38.1
Q ss_pred CeEEEEeCCCccccccHHHHHHHHHHcCCCEEEE---EEcCCccccccccccc-------CCccHHHHHhhc-CeEEEEE
Q 017890 260 ACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFI---CRNNGWAISTNISEQF-------RSDGIVVKGRAY-GIRSIRV 328 (364)
Q Consensus 260 ~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfV---V~NNg~ais~~~~~~~-------~~~~ia~~a~a~-G~~~~~V 328 (364)
...|++-|||++.. +..++..+++|||-| |+||=...+....-.+ ..+.+.+-+.++ .+-.++|
T Consensus 93 d~Li~IGGdgs~~~-----a~~L~e~~~i~vigiPkTIDNDl~~td~s~GfdTA~~~~~~~i~~i~~ta~s~~rv~ivEv 167 (301)
T TIGR02482 93 EGLVVIGGDGSYTG-----AQKLYEEGGIPVIGLPGTIDNDIPGTDYTIGFDTALNTIIDAVDKIRDTATSHERAFVIEV 167 (301)
T ss_pred CEEEEeCCchHHHH-----HHHHHHhhCCCEEeecccccCCCcCcccCcChhHHHHHHHHHHHHHHHHhhcCCCEEEEEe
Confidence 46788889988753 334454578999877 7777654331111010 012232324443 4666677
Q ss_pred eCCCH
Q 017890 329 DGNDA 333 (364)
Q Consensus 329 DGnD~ 333 (364)
=|.+.
T Consensus 168 MGR~~ 172 (301)
T TIGR02482 168 MGRHA 172 (301)
T ss_pred CCCCH
Confidence 77664
No 330
>PRK05772 translation initiation factor IF-2B subunit alpha; Provisional
Probab=20.21 E-value=2.9e+02 Score=28.22 Aligned_cols=61 Identities=13% Similarity=-0.039 Sum_probs=33.3
Q ss_pred cCCCcc--cchhHHHHHHHHhhhccCCCeEEEEeCCCc-cccccHHHHHHHHHHcCCCEEEEEEcCC
Q 017890 235 ISSPIA--TQLPQAVGVAYSLKMEKKDACAVAYTGDGG-TSEGDFHAALNFAAVMEAPVVFICRNNG 298 (364)
Q Consensus 235 ~sg~LG--~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa-~~eG~~~EALn~Aa~~~LPvIfVV~NNg 298 (364)
++|.|. .+.+.|.|.-+..+.++.. .-+++-|.. ..||.-.- ..-....++|+.+|++|--
T Consensus 175 nsg~Lat~~g~gtal~~i~~a~~~gk~--f~V~v~EsRP~~qG~rlt-a~eL~~~GIpvtlI~Dsa~ 238 (363)
T PRK05772 175 NAGGLATGTGLGTALAPVKLAKALGMS--VSVIAPETRPWLQGSRLT-VYELMEEGIKVTLITDTAV 238 (363)
T ss_pred CCcchhhccccccHHHHHHHHHHCCCe--EEEEECCCCccchhHHHH-HHHHHHCCCCEEEEehhHH
Confidence 356665 3466677775555544443 333444544 25663111 1123457899999988764
No 331
>PRK15482 transcriptional regulator MurR; Provisional
Probab=20.10 E-value=3e+02 Score=26.28 Aligned_cols=41 Identities=22% Similarity=0.145 Sum_probs=34.1
Q ss_pred ccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCC
Q 017890 256 EKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNG 298 (364)
Q Consensus 256 ~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg 298 (364)
.+++.++|++.--|...+ ..+++..|...+.++|.|.++..
T Consensus 180 ~~~~Dv~i~iS~sg~t~~--~~~~~~~a~~~g~~iI~IT~~~~ 220 (285)
T PRK15482 180 LKKGDVQIAISYSGSKKE--IVLCAEAARKQGATVIAITSLAD 220 (285)
T ss_pred CCCCCEEEEEeCCCCCHH--HHHHHHHHHHCCCEEEEEeCCCC
Confidence 356678888888888874 78999999999999999998765
No 332
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=20.02 E-value=5.1e+02 Score=25.68 Aligned_cols=51 Identities=20% Similarity=0.229 Sum_probs=32.1
Q ss_pred hHHHHHHH-HhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCC
Q 017890 244 PQAVGVAY-SLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNG 298 (364)
Q Consensus 244 p~AvG~A~-A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg 298 (364)
|.++|... +.+......-+|+++|.|....- ++..|...+.-.|++++-+.
T Consensus 152 pla~~~~~~a~~~~~~~~~~V~V~GaGpIGLl----a~~~a~~~Ga~~Viv~d~~~ 203 (350)
T COG1063 152 PLATAYHGHAERAAVRPGGTVVVVGAGPIGLL----AIALAKLLGASVVIVVDRSP 203 (350)
T ss_pred hhhhhhhhhhhccCCCCCCEEEEECCCHHHHH----HHHHHHHcCCceEEEeCCCH
Confidence 66666333 33332222228999999999642 26677788887777776554
Done!