Query 017890
Match_columns 364
No_of_seqs 318 out of 2438
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 06:34:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017890.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017890hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2bfd_A 2-oxoisovalerate dehydr 100.0 1E-66 3.5E-71 523.4 31.3 285 80-364 5-289 (400)
2 1qs0_A 2-oxoisovalerate dehydr 100.0 3.5E-59 1.2E-63 469.6 29.3 259 105-364 50-309 (407)
3 1w85_A Pyruvate dehydrogenase 100.0 2.6E-57 9E-62 450.7 27.5 252 104-364 18-269 (368)
4 1umd_A E1-alpha, 2-OXO acid de 100.0 8.6E-55 2.9E-59 432.1 29.4 260 104-364 11-271 (367)
5 2ozl_A PDHE1-A type I, pyruvat 100.0 5.2E-55 1.8E-59 433.8 25.9 239 122-364 26-265 (365)
6 2jgd_A 2-oxoglutarate dehydrog 100.0 9.5E-45 3.3E-49 395.1 16.5 256 106-364 170-458 (933)
7 2yic_A 2-oxoglutarate decarbox 100.0 6.1E-45 2.1E-49 394.4 14.4 255 106-364 90-386 (868)
8 2xt6_A 2-oxoglutarate decarbox 100.0 6.6E-44 2.3E-48 394.5 16.0 254 107-364 336-631 (1113)
9 2o1s_A 1-deoxy-D-xylulose-5-ph 100.0 1.3E-32 4.3E-37 289.3 15.3 226 118-363 14-285 (621)
10 2o1x_A 1-deoxy-D-xylulose-5-ph 100.0 2.5E-30 8.5E-35 272.4 12.7 222 121-363 19-290 (629)
11 3rim_A Transketolase, TK; TPP, 100.0 8.1E-28 2.8E-32 255.7 20.4 209 142-363 30-270 (700)
12 1r9j_A Transketolase; domains, 99.9 6.9E-27 2.3E-31 248.1 19.9 204 149-364 20-252 (673)
13 3mos_A Transketolase, TK; thia 99.9 1.2E-26 4E-31 244.1 20.8 224 126-363 4-243 (616)
14 3l84_A Transketolase; TKT, str 99.9 1.2E-26 3.9E-31 244.7 17.9 173 180-363 57-243 (632)
15 1itz_A Transketolase; calvin c 99.9 2.1E-26 7.3E-31 244.3 19.1 224 124-363 8-262 (675)
16 3kom_A Transketolase; rossmann 99.9 2.2E-26 7.6E-31 243.7 18.2 174 180-363 58-250 (663)
17 2e6k_A Transketolase; structur 99.9 2.5E-26 8.7E-31 242.9 18.3 172 182-364 62-252 (651)
18 1gpu_A Transketolase; transfer 99.9 4E-26 1.4E-30 242.4 19.0 174 181-364 60-252 (680)
19 3uk1_A Transketolase; structur 99.9 4.7E-26 1.6E-30 242.7 19.1 171 181-363 98-288 (711)
20 2r8o_A Transketolase 1, TK 1; 99.9 1.3E-25 4.5E-30 238.0 19.4 174 181-364 57-249 (669)
21 3m49_A Transketolase; alpha-be 99.9 1.6E-25 5.6E-30 237.9 18.7 173 180-363 82-274 (690)
22 2qtc_A Pyruvate dehydrogenase 99.9 2E-24 6.7E-29 234.7 18.5 224 131-364 76-394 (886)
23 3ahc_A Phosphoketolase, xylulo 99.8 3E-18 1E-22 184.4 13.9 138 221-362 159-320 (845)
24 4feg_A Pyruvate oxidase; carba 99.7 3.6E-17 1.2E-21 171.0 8.7 119 235-363 418-547 (603)
25 1v5e_A Pyruvate oxidase; oxido 99.7 1.1E-16 3.6E-21 167.0 11.2 119 235-362 411-539 (590)
26 2uz1_A Benzaldehyde lyase; thi 99.7 1.6E-16 5.5E-21 164.4 9.4 117 236-362 418-546 (563)
27 2pan_A Glyoxylate carboligase; 99.7 1E-16 3.5E-21 167.6 8.0 120 235-362 440-580 (616)
28 2vk8_A Pyruvate decarboxylase 99.6 8E-17 2.8E-21 166.5 5.8 121 235-362 411-542 (563)
29 1q6z_A BFD, BFDC, benzoylforma 99.6 1.7E-16 5.8E-21 162.9 7.8 114 237-362 401-525 (528)
30 1ozh_A ALS, acetolactate synth 99.6 2.4E-16 8.3E-21 163.4 7.7 116 235-362 418-543 (566)
31 2iht_A Carboxyethylarginine sy 99.6 3.9E-16 1.3E-20 162.0 8.1 116 235-362 434-561 (573)
32 1t9b_A Acetolactate synthase, 99.6 7.9E-16 2.7E-20 163.3 8.9 116 235-362 511-637 (677)
33 2pgn_A Cyclohexane-1,2-dione h 99.6 3.7E-16 1.3E-20 162.7 5.4 115 236-362 423-547 (589)
34 2vbi_A Pyruvate decarboxylase; 99.6 8.8E-16 3E-20 159.0 7.9 116 235-362 407-533 (566)
35 2vbf_A Branched-chain alpha-ke 99.6 1.1E-15 3.8E-20 158.3 8.6 117 235-362 423-551 (570)
36 1ybh_A Acetolactate synthase, 99.6 2.1E-15 7.2E-20 157.0 10.1 116 235-362 424-558 (590)
37 2wvg_A PDC, pyruvate decarboxy 99.6 1.9E-15 6.5E-20 156.5 8.9 117 235-362 411-541 (568)
38 1ovm_A Indole-3-pyruvate decar 99.6 9.7E-16 3.3E-20 157.9 6.6 116 235-362 406-532 (552)
39 2c31_A Oxalyl-COA decarboxylas 99.6 4.4E-15 1.5E-19 153.8 10.5 116 235-363 424-548 (568)
40 2nxw_A Phenyl-3-pyruvate decar 99.6 1.9E-15 6.4E-20 156.7 7.6 115 236-362 421-542 (565)
41 3eya_A Pyruvate dehydrogenase 99.6 3.7E-15 1.3E-19 153.8 9.6 116 235-362 404-529 (549)
42 2q28_A Oxalyl-COA decarboxylas 99.6 5.9E-15 2E-19 152.6 10.4 115 235-362 419-544 (564)
43 2x7j_A 2-succinyl-5-enolpyruvy 99.5 5.1E-15 1.7E-19 154.6 4.7 114 236-362 454-580 (604)
44 3hww_A 2-succinyl-5-enolpyruvy 99.5 1.3E-14 4.4E-19 150.2 6.4 113 236-362 416-539 (556)
45 3lq1_A 2-succinyl-5-enolpyruvy 99.4 5.4E-14 1.8E-18 146.1 5.9 110 239-362 438-560 (578)
46 2c42_A Pyruvate-ferredoxin oxi 98.8 1.7E-08 5.9E-13 113.4 11.4 97 259-361 953-1069(1231)
47 2iht_A Carboxyethylarginine sy 93.7 0.23 7.7E-06 51.0 9.7 106 245-359 63-169 (573)
48 2pgn_A Cyclohexane-1,2-dione h 93.7 0.36 1.2E-05 49.7 11.2 104 245-359 58-163 (589)
49 1ybh_A Acetolactate synthase, 93.6 0.23 7.7E-06 51.2 9.6 106 244-359 64-170 (590)
50 1ozh_A ALS, acetolactate synth 93.4 0.24 8.3E-06 50.8 9.3 105 245-359 63-168 (566)
51 2uz1_A Benzaldehyde lyase; thi 93.4 0.3 1E-05 50.0 9.9 105 245-359 56-162 (563)
52 2vbi_A Pyruvate decarboxylase; 92.4 0.45 1.5E-05 48.7 9.6 107 244-359 55-167 (566)
53 2wvg_A PDC, pyruvate decarboxy 92.4 0.52 1.8E-05 48.2 10.0 106 245-359 56-167 (568)
54 3eya_A Pyruvate dehydrogenase 92.3 0.36 1.2E-05 49.2 8.7 105 245-359 56-160 (549)
55 1t9b_A Acetolactate synthase, 92.1 0.45 1.6E-05 50.2 9.4 105 245-359 135-240 (677)
56 2q28_A Oxalyl-COA decarboxylas 92.1 0.34 1.2E-05 49.5 8.2 107 245-359 60-167 (564)
57 1yd7_A 2-keto acid:ferredoxin 91.6 0.16 5.3E-06 50.3 4.8 108 241-359 75-186 (395)
58 2c31_A Oxalyl-COA decarboxylas 91.5 0.38 1.3E-05 49.3 7.7 107 245-359 62-169 (568)
59 1v5e_A Pyruvate oxidase; oxido 91.4 0.36 1.2E-05 49.8 7.6 104 245-359 58-162 (590)
60 3mos_A Transketolase, TK; thia 91.3 1.1 3.7E-05 46.9 11.1 101 246-357 367-469 (616)
61 2nxw_A Phenyl-3-pyruvate decar 91.2 0.41 1.4E-05 49.0 7.7 107 245-359 74-184 (565)
62 4feg_A Pyruvate oxidase; carba 91.1 0.39 1.3E-05 49.7 7.4 105 245-359 65-169 (603)
63 2e6k_A Transketolase; structur 90.2 1.4 4.9E-05 46.2 10.8 101 243-357 410-512 (651)
64 2r8o_A Transketolase 1, TK 1; 90.1 1.7 5.7E-05 45.8 11.3 101 243-357 415-517 (669)
65 2x7j_A 2-succinyl-5-enolpyruvy 89.6 0.54 1.9E-05 48.6 7.0 107 245-359 84-196 (604)
66 2pan_A Glyoxylate carboligase; 89.3 1.4 4.6E-05 45.6 9.8 106 245-359 80-186 (616)
67 2o1s_A 1-deoxy-D-xylulose-5-ph 89.1 1.4 4.7E-05 45.9 9.7 101 243-357 374-475 (621)
68 1itz_A Transketolase; calvin c 88.9 2.1 7.1E-05 45.2 10.9 89 259-357 440-530 (675)
69 1gpu_A Transketolase; transfer 88.2 1.8 6.3E-05 45.6 10.0 100 244-357 423-525 (680)
70 3kom_A Transketolase; rossmann 88.1 2.1 7.2E-05 45.2 10.3 101 243-357 416-518 (663)
71 3l84_A Transketolase; TKT, str 88.0 2.4 8.3E-05 44.4 10.7 100 243-357 395-496 (632)
72 1q6z_A BFD, BFDC, benzoylforma 87.5 0.76 2.6E-05 46.5 6.3 107 244-359 52-159 (528)
73 2ozl_B PDHE1-B, pyruvate dehyd 86.8 1.9 6.5E-05 41.6 8.4 98 243-358 75-183 (341)
74 1r9j_A Transketolase; domains, 86.7 3.8 0.00013 43.2 11.3 100 244-357 416-517 (673)
75 2o1x_A 1-deoxy-D-xylulose-5-ph 86.6 1 3.6E-05 46.9 6.9 100 243-357 377-477 (629)
76 2vbf_A Branched-chain alpha-ke 86.4 1.4 5E-05 44.9 7.7 106 244-359 77-188 (570)
77 3lq1_A 2-succinyl-5-enolpyruvy 86.4 2.7 9.1E-05 43.1 9.7 107 245-359 64-176 (578)
78 3m49_A Transketolase; alpha-be 85.8 4.2 0.00014 43.1 11.1 101 243-357 440-542 (690)
79 1qs0_B 2-oxoisovalerate dehydr 85.4 1.9 6.4E-05 41.3 7.5 99 241-356 63-171 (338)
80 2vk8_A Pyruvate decarboxylase 84.7 1.6 5.6E-05 44.4 7.1 106 245-359 57-168 (563)
81 1ik6_A Pyruvate dehydrogenase; 83.1 5.4 0.00018 38.9 9.8 97 243-357 111-218 (369)
82 1umd_B E1-beta, 2-OXO acid deh 81.9 6.4 0.00022 37.3 9.6 97 242-356 63-170 (324)
83 3uk1_A Transketolase; structur 81.8 6.7 0.00023 41.7 10.6 100 243-357 461-562 (711)
84 1ovm_A Indole-3-pyruvate decar 81.2 2.4 8.3E-05 42.9 6.8 106 244-359 57-168 (552)
85 3rim_A Transketolase, TK; TPP, 80.1 7.6 0.00026 41.2 10.3 101 243-357 445-549 (700)
86 2bfd_B 2-oxoisovalerate dehydr 76.6 6.6 0.00023 37.7 7.9 97 243-356 80-187 (342)
87 3ibs_A Conserved hypothetical 76.5 13 0.00044 32.0 9.1 90 241-330 92-197 (218)
88 1w85_B Pyruvate dehydrogenase 75.8 6.8 0.00023 37.2 7.7 97 242-356 62-169 (324)
89 3hww_A 2-succinyl-5-enolpyruvy 74.7 11 0.00037 38.4 9.3 105 245-359 61-169 (556)
90 2c42_A Pyruvate-ferredoxin oxi 68.5 12 0.0004 42.4 8.4 107 242-363 66-175 (1231)
91 2yic_A 2-oxoglutarate decarbox 54.8 32 0.0011 37.4 8.5 105 243-356 597-707 (868)
92 2jgd_A 2-oxoglutarate dehydrog 54.6 24 0.00082 38.7 7.6 65 287-356 711-775 (933)
93 2xt6_A 2-oxoglutarate decarbox 53.6 32 0.0011 38.4 8.5 106 246-356 841-952 (1113)
94 4hhu_A OR280; engineered prote 50.7 19 0.00063 30.1 4.6 35 320-354 81-115 (170)
95 2pqm_A Cysteine synthase; OASS 41.2 2E+02 0.0069 26.9 11.1 66 274-353 87-153 (343)
96 2kl8_A OR15; structural genomi 36.1 47 0.0016 24.8 4.3 29 326-354 5-33 (85)
97 2fwh_A Thiol:disulfide interch 32.8 60 0.0021 25.5 5.0 37 102-138 88-125 (134)
98 1ydn_A Hydroxymethylglutaryl-C 32.1 2.2E+02 0.0075 26.0 9.5 44 316-359 86-141 (295)
99 1j0a_A 1-aminocyclopropane-1-c 32.1 1.5E+02 0.005 27.5 8.3 48 274-332 81-129 (325)
100 2x5n_A SPRPN10, 26S proteasome 32.0 49 0.0017 28.8 4.7 33 262-294 110-142 (192)
101 3f9u_A Putative exported cytoc 31.7 80 0.0027 25.8 5.8 36 103-139 128-164 (172)
102 1m3s_A Hypothetical protein YC 30.4 96 0.0033 25.9 6.2 40 257-298 78-117 (186)
103 3dwg_A Cysteine synthase B; su 30.2 2.1E+02 0.0073 26.5 9.2 62 274-350 82-145 (325)
104 3c5c_A RAS-like protein 12; GD 29.6 2E+02 0.0068 23.6 8.0 59 286-348 126-185 (187)
105 1jeo_A MJ1247, hypothetical pr 29.4 1.2E+02 0.0042 25.0 6.6 40 257-298 81-120 (180)
106 3ghf_A Septum site-determining 28.7 67 0.0023 26.1 4.6 45 316-360 10-56 (120)
107 1nw9_B Caspase 9, apoptosis-re 28.5 1.2E+02 0.0041 27.9 6.9 56 290-345 23-82 (277)
108 1pyo_A Caspase-2; apoptosis, c 28.2 1.3E+02 0.0043 25.8 6.6 34 312-345 61-94 (167)
109 1y7l_A O-acetylserine sulfhydr 28.2 1.4E+02 0.0049 27.4 7.5 66 274-353 71-137 (316)
110 3sho_A Transcriptional regulat 27.9 1.3E+02 0.0045 24.9 6.6 41 256-298 85-125 (187)
111 2xhz_A KDSD, YRBH, arabinose 5 26.1 1.3E+02 0.0044 24.9 6.2 40 257-298 95-134 (183)
112 3cf4_G Acetyl-COA decarboxylas 26.1 57 0.0019 27.6 3.9 34 259-292 34-67 (170)
113 1x0u_A Hypothetical methylmalo 25.8 69 0.0024 32.7 5.1 14 287-300 163-176 (522)
114 1zzo_A RV1677; thioredoxin fol 25.5 54 0.0019 24.8 3.4 35 103-139 99-133 (136)
115 1on3_A Methylmalonyl-COA carbo 25.4 79 0.0027 32.2 5.4 15 287-301 167-181 (523)
116 3hbm_A UDP-sugar hydrolase; PS 25.0 1.8E+02 0.0061 26.8 7.5 34 263-297 3-38 (282)
117 2h54_A Caspase-1; allosteric s 25.0 1.1E+02 0.0038 26.5 5.6 57 289-345 44-101 (178)
118 3etn_A Putative phosphosugar i 24.9 1.3E+02 0.0044 26.3 6.2 40 257-298 105-146 (220)
119 2lja_A Putative thiol-disulfid 24.6 76 0.0026 24.9 4.2 36 103-139 106-141 (152)
120 3tbh_A O-acetyl serine sulfhyd 24.6 1.6E+02 0.0054 27.7 7.1 63 274-350 81-144 (334)
121 3or5_A Thiol:disulfide interch 24.5 74 0.0025 25.3 4.2 37 103-140 114-150 (165)
122 4aec_A Cysteine synthase, mito 24.5 2.2E+02 0.0077 28.0 8.4 68 274-355 184-252 (430)
123 2khz_A C-MYC-responsive protei 24.5 72 0.0025 27.1 4.3 36 259-297 78-113 (165)
124 1lu4_A Soluble secreted antige 24.1 64 0.0022 24.6 3.6 35 103-139 97-134 (136)
125 3od5_A Caspase-6; caspase doma 23.9 1.3E+02 0.0044 27.9 6.2 56 289-344 22-81 (278)
126 4evm_A Thioredoxin family prot 23.9 53 0.0018 24.8 3.0 35 103-138 102-136 (138)
127 2d1f_A Threonine synthase; ami 23.5 1.6E+02 0.0055 27.8 7.0 48 273-331 93-141 (360)
128 3fxa_A SIS domain protein; str 23.5 1E+02 0.0034 26.2 5.0 40 257-298 91-130 (201)
129 3ss7_X D-serine dehydratase; t 23.4 2.1E+02 0.0071 28.1 8.0 20 124-143 41-60 (442)
130 3gxh_A Putative phosphatase (D 23.2 2.5E+02 0.0084 23.0 7.4 44 314-360 59-106 (157)
131 2dko_A Caspase-3; low barrier 22.9 1.2E+02 0.004 25.4 5.2 56 290-345 18-77 (146)
132 2q5c_A NTRC family transcripti 22.9 2.6E+02 0.009 24.1 7.8 83 262-349 96-186 (196)
133 1z7w_A Cysteine synthase; tran 22.8 1.8E+02 0.0062 26.8 7.1 68 273-355 75-144 (322)
134 3pc3_A CG1753, isoform A; CBS, 22.5 1.7E+02 0.0057 29.3 7.2 46 273-330 121-167 (527)
135 3t5g_A GTP-binding protein RHE 22.1 2.8E+02 0.0097 22.0 7.5 62 287-352 111-172 (181)
136 3fk8_A Disulphide isomerase; A 21.9 1E+02 0.0034 23.8 4.4 36 104-139 90-131 (133)
137 1sen_A Thioredoxin-like protei 21.8 1.3E+02 0.0046 24.6 5.4 37 104-140 102-147 (164)
138 2nn3_C Caspase-1; cysteine pro 21.8 1.4E+02 0.0047 28.3 6.0 57 289-345 61-120 (310)
139 2bzr_A Propionyl-COA carboxyla 21.8 92 0.0032 32.0 5.1 13 288-300 181-193 (548)
140 2q3b_A Cysteine synthase A; py 21.7 3.8E+02 0.013 24.4 9.1 47 273-331 75-122 (313)
141 1m72_A Caspase-1; caspase, cys 21.6 94 0.0032 28.7 4.7 56 290-345 34-92 (272)
142 1qtn_A Caspase-8; apoptosis, d 21.6 1.7E+02 0.0059 24.9 6.1 34 312-345 58-91 (164)
143 2ju5_A Thioredoxin disulfide i 21.3 92 0.0032 25.2 4.2 38 102-139 113-150 (154)
144 3fkf_A Thiol-disulfide oxidore 21.2 75 0.0026 24.6 3.5 35 102-140 111-145 (148)
145 3raz_A Thioredoxin-related pro 20.8 1.1E+02 0.0036 24.2 4.4 37 103-140 103-139 (151)
146 1vim_A Hypothetical protein AF 20.7 1.7E+02 0.0057 25.0 5.9 40 257-298 88-127 (200)
147 3ewl_A Uncharacterized conserv 20.2 88 0.003 24.2 3.7 33 103-139 107-139 (142)
No 1
>2bfd_A 2-oxoisovalerate dehydrogenase alpha subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.11 PDB: 1v16_A* 2bfc_A* 1v1r_A* 1olu_A* 2bfb_A* 1v1m_A* 2bew_A* 1dtw_A* 1olx_A* 1ols_A* 1wci_A* 1x80_A* 2beu_A* 1u5b_A* 2bev_A* 1v11_A* 1x7x_A* 1x7y_A* 1x7w_A* 1x7z_A* ...
Probab=100.00 E-value=1e-66 Score=523.37 Aligned_cols=285 Identities=48% Similarity=0.841 Sum_probs=274.5
Q ss_pred cccccCCCCccCccccccccCCCCCCCCeeEEecCCCCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc
Q 017890 80 QVLDFPGGKVGYTSEMRFIPESSEKRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFS 159 (364)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~~~~g~~~~~~~~~~~s~e~l~~ly~~M~~~R~~D~~~~~~~rqGri~ 159 (364)
..++|||++++||++|+|++|.....+|+|||||++|+++++...+.+++|+++++|+.|+++|.||+++.++++||||+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~e~~~~~y~~M~~~r~fe~~~~~~~~~gri~ 84 (400)
T 2bfd_A 5 DKPQFPGASAEFIDKLEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPKEKVLKLYKSMTLLNTMDRILYESQRQGRIS 84 (400)
T ss_dssp -CCCCTTCCCCCCSSCCCCCCCCSSCSCEECSBCTTSCBSCGGGCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSS
T ss_pred cCCCCCCCCcccccceeeccCcccCCCCeeEEECCCCCCCCccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Confidence 47899999999999999999988889999999999999998876789999999999999999999999999999999999
Q ss_pred ccccCCchhHHHHHHHhhcCCCcEEEccCCchhHHHhcCCCHHHHHHHHhcCCCCCCCCCCCccccCCCcccccccCCCc
Q 017890 160 FYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPI 239 (364)
Q Consensus 160 f~~~~~GqEa~~vg~a~aL~~~D~v~~~yR~~g~ll~rG~~~~~~l~~~~g~~~~~~~Gr~mp~H~~~~~~~~~~~sg~L 239 (364)
||+++.||||+++|++.+|+++|+|+++||+|++++++|++++++|.+++++.+++++|+++++|++.++.++.+.+|+|
T Consensus 85 ~~~~~~GqEa~~vg~~~al~~~D~v~~~yR~~~~~~~~G~~~~~~l~e~~g~~~g~~~G~~~~~H~~~~~~~~~~~~g~l 164 (400)
T 2bfd_A 85 FYMTNYGEEGTHVGSAAALDNTDLVFGQAREAGVLMYRDYPLELFMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPL 164 (400)
T ss_dssp CCCCCTTCHHHHHHHHHTSCTTSEEECCSCCHHHHHHTTCCHHHHHHHHHTCTTCTTTTCSCSSCCCBTTTTBCCCCSST
T ss_pred eeecCCChHHHHHHHHHhcCCCCEEEecCcCHHHHHHcCCCHHHHHHHhcCCCCCCCCCCCCCcCCcccccCccccCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999998888899999999
Q ss_pred ccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCccHHHHHh
Q 017890 240 ATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGR 319 (364)
Q Consensus 240 G~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~ 319 (364)
|+++|+|+|+|+|.|+++++++|||++|||+++||.+||+||+|+.++||+||||+||+|+++++...+....+++++++
T Consensus 165 G~~lp~AvG~AlA~~~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vv~NN~~~i~~~~~~~~~~~d~~~~a~ 244 (400)
T 2bfd_A 165 ATQIPQAVGAAYAAKRANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYRGDGIAARGP 244 (400)
T ss_dssp TTHHHHHHHHHHHHHHHTCCCCEEEEEETTGGGSHHHHHHHHHHHHTTCCEEEEEEECSEETTEEGGGTCSSSTTGGGTG
T ss_pred cccccHHHHHHHhhhhhCCCCeEEEEECchhhhcChHHHHHHHHHHHCcCEEEEEECCceeeeecccccCCCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999888888889999999
Q ss_pred hcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeeccC
Q 017890 320 AYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNFLW 364 (364)
Q Consensus 320 a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R~~ 364 (364)
+|||++++|||||+++|++|+++|++++|++++|+|||++|||++
T Consensus 245 a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~~P~lIe~~tyR~~ 289 (400)
T 2bfd_A 245 GYGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYRIG 289 (400)
T ss_dssp GGTCEEEEEETTCHHHHHHHHHHHHHHHHHHTCCEEEEEECCCCC
T ss_pred HcCCcEEEEeCCCHHHHHHHHHHHHHHHHhCCCCEEEEEEeeeeC
Confidence 999999999999999999999999999999899999999999974
No 2
>1qs0_A 2-oxoisovalerate dehydrogenase alpha-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.11 PDB: 2bp7_A
Probab=100.00 E-value=3.5e-59 Score=469.58 Aligned_cols=259 Identities=38% Similarity=0.530 Sum_probs=247.8
Q ss_pred CCCeeEEecCCCCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccCCchhHHHHHHHhhcCCCcEE
Q 017890 105 RVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALSADDFI 184 (364)
Q Consensus 105 ~~~~~rv~~~~g~~~~~~~~~~~s~e~l~~ly~~M~~~R~~D~~~~~~~rqGri~f~~~~~GqEa~~vg~a~aL~~~D~v 184 (364)
.+|+|||||++|+++++ ..+.+++|+++++|+.|+++|.||+++.++|+||||+||+++.||||+++|++.+|+++|+|
T Consensus 50 ~~~~~~~ld~~g~~~~~-~~~~~~~e~~~~~y~~M~~~R~fe~~~~~~~~qgr~~~~~~~~GqEA~~vg~~~al~~~D~v 128 (407)
T 1qs0_A 50 SYSLVRVLDEQGDAQGP-WAEDIDPQILRQGMRAMLKTRIFDSRMVVAQRQKKMSFYMQSLGEEAIGSGQALALNRTDMC 128 (407)
T ss_dssp HTSCBCCBCTTSCBCSG-GGSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSCCCCCTTTHHHHHHHHHHSCTTSEE
T ss_pred CCCeEEEECCCCCCCCc-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccCcCCCChHHHHHHHHHhcCCCCEE
Confidence 36889999999999875 35789999999999999999999999999999999999999999999999999999999999
Q ss_pred EccCCchhHHHhcCCCHHHHHHHHhcCCCCCCCCCCCccccCCCcccccccCCCcccchhHHHHHHHHhhhccCCCeEEE
Q 017890 185 LPQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAVA 264 (364)
Q Consensus 185 ~~~yR~~g~ll~rG~~~~~~l~~~~g~~~~~~~Gr~mp~H~~~~~~~~~~~sg~LG~~lp~AvG~A~A~k~~~~~~~vv~ 264 (364)
+++||+|++.+++|+++.++|.+++|+..|.++|+++++|++..+.++++.+|+||+++|+|+|+|+|.|+++++++|||
T Consensus 129 ~~~yR~~~~~l~~g~~~~~i~~el~g~~~~~~~G~g~~~h~~~~~~~~~~~~g~lG~~lp~AvGaA~A~k~~~~~~~vv~ 208 (407)
T 1qs0_A 129 FPTYRQQSILMARDVSLVEMICQLLSNERDPLKGRQLPIMYSVREAGFFTISGNLATQFVQAVGWAMASAIKGDTKIASA 208 (407)
T ss_dssp ECCSSCHHHHHHTTCCHHHHHHHHHTCTTCTTTTCSCTTCCCBGGGTBCCCCSSSSHHHHHHHHHHHHHHHTTCCCCEEE
T ss_pred EecccchHHHHhcCCCHHHHHHHHhCCCCCCCCCCCceeecchhccCccccccccccchhHHHHHHHHHHHhCCCCEEEE
Confidence 99999999999999999999999999999988999999999987789999999999999999999999999999999999
Q ss_pred EeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCccccccccccc-CCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHH
Q 017890 265 YTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQF-RSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAA 343 (364)
Q Consensus 265 ~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~~~-~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A 343 (364)
++|||+++||.+||+||+|+.|++|+||||+||+|+++++...+. ...+++++|++|||++++|||+|+++|++++++|
T Consensus 209 i~GDGa~~~G~~~Eal~~A~~~~lpvi~Vv~NN~~gi~~~~~~~~~~~~d~a~~a~a~G~~~~~VdG~D~~av~~a~~~A 288 (407)
T 1qs0_A 209 WIGDGATAESDFHTALTFAHVYRAPVILNVVNNQWAISTFQAIAGGESTTFAGRGVGCGIASLRVDGNDFVAVYAASRWA 288 (407)
T ss_dssp EEETGGGGSHHHHHHHHHHHHHTCCEEEEEEECSEETTEEGGGGTTTTCCSTHHHHHTTCEEEEEETTCHHHHHHHHHHH
T ss_pred EECCchhhcChHHHHHHHHHHHCcCEEEEEECCCcceeeccccccCCCCCHHHHHHHcCCeEEEEcCCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999887666 5679999999999999999999999999999999
Q ss_pred HHHhhcCCCcEEEEEEeeccC
Q 017890 344 REMAISEKRPVLVEVRLNFLW 364 (364)
Q Consensus 344 ~~~ar~~~~P~LIea~T~R~~ 364 (364)
++++|++++|+|||++|||.+
T Consensus 289 ~~~ar~~~gP~lIe~~t~R~~ 309 (407)
T 1qs0_A 289 AERARRGLGPSLIEWVTYRAG 309 (407)
T ss_dssp HHHHHTTSCCEEEEEECCCCS
T ss_pred HHHHHhcCCCEEEEEEeeccC
Confidence 999999999999999999974
No 3
>1w85_A Pyruvate dehydrogenase E1 component, alpha subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.11 PDB: 3duf_A* 3dv0_A* 3dva_A* 1w88_A*
Probab=100.00 E-value=2.6e-57 Score=450.68 Aligned_cols=252 Identities=39% Similarity=0.597 Sum_probs=238.1
Q ss_pred CCCCeeEEecCCCCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccCCchhHHHHHHHhhcCCCcE
Q 017890 104 KRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALSADDF 183 (364)
Q Consensus 104 ~~~~~~rv~~~~g~~~~~~~~~~~s~e~l~~ly~~M~~~R~~D~~~~~~~rqGri~f~~~~~GqEa~~vg~a~aL~~~D~ 183 (364)
..+|+|||||++|+++++...+.+++++++++|+.|+++|.||+++.++++||||+||+++.||||+++|++.+|+++|+
T Consensus 18 ~~~~~~~~l~~~g~~~~~~~~~~l~~e~l~~~y~~M~~~R~fe~~~~~~~~qgr~g~~~~~~G~Ea~~vg~~~~l~~~D~ 97 (368)
T 1w85_A 18 EQFPTFQILNEEGEVVNEEAMPELSDEQLKELMRRMVYTRILDQRSISLNRQGRLGFYAPTAGQEASQIASHFALEKEDF 97 (368)
T ss_dssp HTCCEECSBCTTSCBSCGGGCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCSCCCCTTCHHHHHHHHHTCCTTCE
T ss_pred CCCCeeEEECCCCCCCCccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccCCCCCCHHHHHHHHHHhcCCcCE
Confidence 46799999999999988766678999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCchhHHHhcCCCHHHHHHHHhcCCCCCCCCCCCccccCCCcccccccCCCcccchhHHHHHHHHhhhccCCCeEE
Q 017890 184 ILPQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAV 263 (364)
Q Consensus 184 v~~~yR~~g~ll~rG~~~~~~l~~~~g~~~~~~~Gr~mp~H~~~~~~~~~~~sg~LG~~lp~AvG~A~A~k~~~~~~~vv 263 (364)
|+++||+|++++.+|.++.++|.+++|+.+ |+.| | .+.++.+.+|+||+++|+|+|+|+|.|+++++++||
T Consensus 98 v~~~~R~~~~~~~~G~~~~~~~~el~G~~~----G~~~--h---~~~~~~~~~g~lG~~lp~AvG~A~A~~~~~~~~~vv 168 (368)
T 1w85_A 98 ILPGYRDVPQIIWHGLPLYQAFLFSRGHFH----GNQI--P---EGVNVLPPQIIIGAQYIQAAGVALGLKMRGKKAVAI 168 (368)
T ss_dssp EECCSSCHHHHHHTTCCHHHHHHHHHTCGG----GGCC--C---TTCCBCCCCCSTTHHHHHHHHHHHHHHHTTCSCCEE
T ss_pred EEecchhHHHHHhcCCCHHHHHHHHCCCCC----CCCC--C---cccccCCCccccCccccHHHHHHHHhHhhCCCCeEE
Confidence 999999999999999999999999999754 5555 4 346788899999999999999999999999999999
Q ss_pred EEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHH
Q 017890 264 AYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAA 343 (364)
Q Consensus 264 ~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A 343 (364)
|++|||++++|.+||+||+|+.+++|+||||+||+|+++++...+....+++++|++|||++++|||||+++|++|+++|
T Consensus 169 ~i~GDGa~~~G~~~Eal~~A~~~~lpvi~vv~NN~~gi~~~~~~~~~~~d~~~~a~a~G~~~~~VdG~D~~av~~a~~~A 248 (368)
T 1w85_A 169 TYTGDGGTSQGDFYEGINFAGAFKAPAIFVVQNNRFAISTPVEKQTVAKTLAQKAVAAGIPGIQVDGMDPLAVYAAVKAA 248 (368)
T ss_dssp EEEETGGGGSHHHHHHHHHHHHTTCCEEEEEEECSEETTEEGGGTCSCSCSGGGGGGTTCCEEEEETTCHHHHHHHHHHH
T ss_pred EEEchhhhhhcHHHHHHHHHHHHCcCEEEEEEcCCccceeccccccCCCCHHHHHHHCCCCEEEEcCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999888777789999999999999999999999999999999
Q ss_pred HHHhhcCCCcEEEEEEeeccC
Q 017890 344 REMAISEKRPVLVEVRLNFLW 364 (364)
Q Consensus 344 ~~~ar~~~~P~LIea~T~R~~ 364 (364)
++++|++++|+|||++|||.+
T Consensus 249 ~~~~r~~~gP~lIe~~t~r~~ 269 (368)
T 1w85_A 249 RERAINGEGPTLIETLCFRYG 269 (368)
T ss_dssp HHHHHTTSCCEEEEEECCCSS
T ss_pred HHHHHhcCCCEEEEEEeeccC
Confidence 999999999999999999974
No 4
>1umd_A E1-alpha, 2-OXO acid dehydrogenase alpha subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.11 PDB: 1um9_A* 1umc_A* 1umb_A*
Probab=100.00 E-value=8.6e-55 Score=432.07 Aligned_cols=260 Identities=39% Similarity=0.555 Sum_probs=249.0
Q ss_pred CCCCeeEEecCCCCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccCCchhHHHHHHHhhcCCC-c
Q 017890 104 KRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALSAD-D 182 (364)
Q Consensus 104 ~~~~~~rv~~~~g~~~~~~~~~~~s~e~l~~ly~~M~~~R~~D~~~~~~~rqGri~f~~~~~GqEa~~vg~a~aL~~~-D 182 (364)
..+|+|||||++|+++++ ..+.+++++++++|+.|+++|.||.++..++++|+++|++++.|+|+++++...+|+++ |
T Consensus 11 ~~~~~~~~l~~~g~~~~~-~~~~l~~~~l~~l~~~m~~~R~~~~~~~~~~~~G~~g~~~~~~G~ea~~~~~~~~l~~~rD 89 (367)
T 1umd_A 11 FTEEPIRLIGEEGEWLGD-FPLDLEGEKLRRLYRDMLAARMLDERYTILIRTGKTSFIAPAAGHEAAQVAIAHAIRPGFD 89 (367)
T ss_dssp SCSSCBCCBCTTSCBCCS-SCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSCCCCCTTCHHHHHHHHHHSCTTTS
T ss_pred CCCCeEEEECCCCCCCCc-cCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccCCCCCcCHHHHHHHHHHHcCCCCc
Confidence 467999999999999887 56789999999999999999999999999999999999999999999999999999998 9
Q ss_pred EEEccCCchhHHHhcCCCHHHHHHHHhcCCCCCCCCCCCccccCCCcccccccCCCcccchhHHHHHHHHhhhccCCCeE
Q 017890 183 FILPQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACA 262 (364)
Q Consensus 183 ~v~~~yR~~g~ll~rG~~~~~~l~~~~g~~~~~~~Gr~mp~H~~~~~~~~~~~sg~LG~~lp~AvG~A~A~k~~~~~~~v 262 (364)
+|+++||++++++.+|++++++|.+++++.+++++|+++++|+++++.++.+.+|++|+++|+|+|+|+|.|+.+++++|
T Consensus 90 ~i~~s~r~~~~~~~~G~~~~~~l~~~~g~~~g~~~G~~~~~h~~~~~~~~~~~~g~lG~~l~~a~G~A~a~k~~~~~~~v 169 (367)
T 1umd_A 90 WVFPYYRDHGLALALGIPLKELLGQMLATKADPNKGRQMPEHPGSKALNFFTVASPIASHVPPAAGAAISMKLLRTGQVA 169 (367)
T ss_dssp EEECCTTTHHHHHHHTCCHHHHHHHHHTBTTCTTTTCSCSSCCCBTTTTBCCCCSSTTTTHHHHHHHHHHHHHTTCCCCE
T ss_pred EEEeCcHHHHHHHHcCCCHHHHHHHHhCCCCCCCCCCCCCCCCcccccCcCCCCchhhhhhhHHHHHHHHHHHhCCCCeE
Confidence 99999999999999999999999999999999999999999998877888889999999999999999999999999999
Q ss_pred EEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHH
Q 017890 263 VAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQA 342 (364)
Q Consensus 263 v~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~ 342 (364)
||++|||++++|.+||||++|+.+++|+||||+||+|+++++...+....++++++++|||++++|||+|+++|++|+++
T Consensus 170 v~i~GDGa~~~G~~~Eal~~A~~~~lpvi~vv~NN~~gi~~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~d~~av~~a~~~ 249 (367)
T 1umd_A 170 VCTFGDGATSEGDWYAGINFAAVQGAPAVFIAENNFYAISVDYRHQTHSPTIADKAHAFGIPGYLVDGMDVLASYYVVKE 249 (367)
T ss_dssp EEEEETGGGGSHHHHHHHHHHHHTTCSEEEEEEECSEETTEEHHHHCSSSCSGGGGGGTTSCEEEEETTCHHHHHHHHHH
T ss_pred EEEEcccccccCcHHHHHHHHHHhCcCEEEEEecCCeeeccChhhccCCCCHHHHHHHcCCcEEEeCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999887777778999999999999999999999999999999
Q ss_pred HHHHhhcCCCcEEEEEEeeccC
Q 017890 343 AREMAISEKRPVLVEVRLNFLW 364 (364)
Q Consensus 343 A~~~ar~~~~P~LIea~T~R~~ 364 (364)
|++++++.++|+|||++|||.+
T Consensus 250 A~~~a~~~~gP~lIe~~t~r~~ 271 (367)
T 1umd_A 250 AVERARRGEGPSLVELRVYRYG 271 (367)
T ss_dssp HHHHHHTTCCCEEEEEECCCCS
T ss_pred HHHHHHhcCCCEEEEEEeecCC
Confidence 9999999999999999999963
No 5
>2ozl_A PDHE1-A type I, pyruvate dehydrogenase E1 component alpha subunit, somatic form; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.11 PDB: 1ni4_A* 3exe_A* 3exi_A 3exh_A* 3exg_A 3exf_A*
Probab=100.00 E-value=5.2e-55 Score=433.79 Aligned_cols=239 Identities=26% Similarity=0.403 Sum_probs=225.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc-cccccCCchhHHHHHHHhhcCCCcEEEccCCchhHHHhcCCC
Q 017890 122 SDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRF-SFYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYT 200 (364)
Q Consensus 122 ~~~~~~s~e~l~~ly~~M~~~R~~D~~~~~~~rqGri-~f~~~~~GqEa~~vg~a~aL~~~D~v~~~yR~~g~ll~rG~~ 200 (364)
...+.+++|+++++|+.|+++|.||+++.++||||+| +||+++.||||+++|+.++|+++|+|+++||+|++++++|++
T Consensus 26 ~~~~~l~~e~l~~~yr~M~~~R~~e~~~~~l~~~g~i~gf~~~~~GqEa~~vg~~~al~~~D~i~~~yR~~~~~~~~G~~ 105 (365)
T 2ozl_A 26 PVTTVLTREDGLKYYRMMQTVRRMELKADQLYKQKIIRGFCHLCDGQEACCVGLEAGINPTDHLITAYRAHGFTFTRGLS 105 (365)
T ss_dssp CSEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCSCCCCCTTCHHHHHHHHHTSCTTSEEECCSCCHHHHHHTTCC
T ss_pred cccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccCCCChHHHHHHHHHhhCCCCEEehHHHHHHHHHhcCCC
Confidence 3456799999999999999999999999999999999 799999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCCCCCCccccCCCcccccccCCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHH
Q 017890 201 LQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAAL 280 (364)
Q Consensus 201 ~~~~l~~~~g~~~~~~~Gr~mp~H~~~~~~~~~~~sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EAL 280 (364)
++++|.+++|+.+++++|++.++|+.+ .++.+.+|+||+++|+|+|+|+|.|+++++++|||++|||++++|.+||+|
T Consensus 106 ~~~i~~e~~g~~~g~~~g~gg~~H~~~--~~~~~~~g~~G~~lp~A~G~A~A~~~~~~~~~vv~~~GDGa~~~G~~~Eal 183 (365)
T 2ozl_A 106 VREILAELTGRKGGCAKGKGGSMHMYA--KNFYGGNGIVGAQVPLGAGIALACKYNGKDEVCLTLYGDGAANQGQIFEAY 183 (365)
T ss_dssp HHHHHHHHTTCTTSTTTTSSCTTCCCB--TTBCCCCCSTTTHHHHHHHHHHHHHHHTCCCCEEEEEETTGGGCHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCCCCCCCCCcCc--cccCCCcchhhhhhHHHHHHHHHHHhcCCCceEEEEECchhhhccHHHHHH
Confidence 999999999999998888888889854 578888899999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEe
Q 017890 281 NFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRL 360 (364)
Q Consensus 281 n~Aa~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T 360 (364)
|+|+.|++|+||||+||+|+++++...+....++++ ++||+++++|||||+++|++++++|++++|++++|+|||++|
T Consensus 184 n~A~~~~lpvi~vv~NN~~g~~t~~~~~~~~~~~~~--ra~g~p~~~VdG~D~~av~~a~~~A~~~~r~~~gP~lIe~~t 261 (365)
T 2ozl_A 184 NMAALWKLPCIFICENNRYGMGTSVERAAASTDYYK--RGDFIPGLRVDGMDILCVREATRFAAAYCRSGKGPILMELQT 261 (365)
T ss_dssp HHHHHTTCCEEEEEEECSEETTEEHHHHCSCCCGGG--TTTTSCEEEEETTCHHHHHHHHHHHHHHHHTTCCCEEEEEEC
T ss_pred HHHHHHCcCEEEEEECCCcccCCCcccccCCCCHHH--HhCCCCEEEEeCCCHHHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 999999999999999999999998777766777877 589999999999999999999999999999999999999999
Q ss_pred eccC
Q 017890 361 NFLW 364 (364)
Q Consensus 361 ~R~~ 364 (364)
||.+
T Consensus 262 ~R~~ 265 (365)
T 2ozl_A 262 YRYH 265 (365)
T ss_dssp CCSS
T ss_pred ecCC
Confidence 9974
No 6
>2jgd_A 2-oxoglutarate dehydrogenase E1 component; flavoprotein, oxidoreductase, thiamine diphosphate, thiamine pyrophosphate, adenosine monophosphate; HET: AMP; 2.6A {Escherichia coli} PDB: 2jgd_B*
Probab=100.00 E-value=9.5e-45 Score=395.06 Aligned_cols=256 Identities=14% Similarity=0.114 Sum_probs=213.0
Q ss_pred CCeeEEecCCCC-cccC---CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccCCchhHHHHHHHhhcC--
Q 017890 106 VPCFRVLDDNGE-LIKG---SDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALS-- 179 (364)
Q Consensus 106 ~~~~rv~~~~g~-~~~~---~~~~~~s~e~l~~ly~~M~~~R~~D~~~~~~~rqGri~f~~~~~GqEa~~vg~a~aL~-- 179 (364)
++..+|+|.+|+ .+.+ ...+.+++|+++++|+.|+++|.||+++.+++++|+. .+..|||++++|+..+++
T Consensus 170 ~e~~~i~~~~~~~w~~~~~e~~~~~~s~e~~~~~y~~m~~~r~fE~~l~~~~~~gkr---f~~~G~Ea~i~g~~~~~~~a 246 (933)
T 2jgd_A 170 AEYMHITSTEEKRWIQQRIESGRATFNSEEKKRFLSELTAAEGLERYLGAKFPGAKR---FSLEGGDALIPMLKEMIRHA 246 (933)
T ss_dssp EECSSCCCHHHHHHHHHHHCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC--C---CCCTTCTTHHHHHHHHHHHH
T ss_pred ceeeecCCHHHhHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc---ccCCCchHHHHHHHHHHHHH
Confidence 467899999998 3322 1146899999999999999999999999999999972 246899999999665554
Q ss_pred ----CCcEEEc-cCCchhHHHh--cCCCHHHHHHHHhcCCCCCCCCCCCccccCCCcc----------cccccCCCcccc
Q 017890 180 ----ADDFILP-QYREPGVLLW--RGYTLQQFANQVFANKADDGKGRQMPIHYGSKKL----------NYITISSPIATQ 242 (364)
Q Consensus 180 ----~~D~v~~-~yR~~g~ll~--rG~~~~~~l~~~~g~~~~~~~Gr~mp~H~~~~~~----------~~~~~sg~LG~~ 242 (364)
++|+|++ +||+|+++|+ +|++++++|++|+|+.++.+.|+++++|++.... ++.+++|++|++
T Consensus 247 ~~~g~~D~v~g~~hRg~~~~Lan~~G~~~~~i~~e~~G~~~g~~g~gdv~~Hlg~~~~~~~~gg~~~l~l~~~~shlg~~ 326 (933)
T 2jgd_A 247 GNSGTREVVLGMAHRGRLNVLVNVLGKKPQDLFDEFAGKHKEHLGTGDVKYHMGFSSDFQTDGGLVHLALAFNPSHLEIV 326 (933)
T ss_dssp HTTTCCEEEEECCSTTHHHHHHHTTCCCHHHHHHHHHTCC--CCSCCCCGGGCCEEEEEEETTEEEEEEECCCCSSTTCH
T ss_pred hhCCCCCEEecCCCcCHHHHHHHHhCCCHHHHHHHhcCCCCCCCCCCCccccCCcccccccCCCceEEeecccCcccccc
Confidence 7999996 8999999999 9999999999999998887778889999886442 235778999999
Q ss_pred hhHHHHHHHHhhhcc-----CCCeEEEEeCCCcc-ccccHHHHHHHHHHcCCC---EEEEEEcCCccccc-ccccccCCc
Q 017890 243 LPQAVGVAYSLKMEK-----KDACAVAYTGDGGT-SEGDFHAALNFAAVMEAP---VVFICRNNGWAIST-NISEQFRSD 312 (364)
Q Consensus 243 lp~AvG~A~A~k~~~-----~~~~vv~~~GDGa~-~eG~~~EALn~Aa~~~LP---vIfVV~NNg~ais~-~~~~~~~~~ 312 (364)
+|+|+|+|+|.|+++ .+.++||++|||++ ++|.+||+||+|+.+++| +||||+||+|+|++ ++.++....
T Consensus 327 ~p~A~G~A~A~~~~~~~~~~~~~~vv~v~GDGa~a~qG~~~Ealn~A~~~~lp~gg~I~vv~nN~~~ist~~~~~~~~~~ 406 (933)
T 2jgd_A 327 SPVVIGSVRARLDRLDEPSSNKVLPITIHGDAAVTGQGVVQETLNMSKARGYEVGGTVRIVINNQVGFTTSNPLDARSTP 406 (933)
T ss_dssp HHHHHHHHHHHHTTSSSCCGGGEEEEEEEEHHHHHHCTHHHHHHHHTTSTTTCCSCCEEEEEECC---------------
T ss_pred cCHHHHHHHHHHhhccccCCCCeEEEEEECCcccccCCHHHHHHHHhhccCCCCCceEEEEEeCCccccCCCHHhcccch
Confidence 999999999999874 67899999999998 899999999999999999 99999999999999 888777778
Q ss_pred cHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeeccC
Q 017890 313 GIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNFLW 364 (364)
Q Consensus 313 ~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R~~ 364 (364)
++++++++|||++++|||||+++|++++++|++++|++++|+|||++|||.+
T Consensus 407 ~~~~~a~a~g~p~~~VdG~D~~av~~a~~~A~e~~r~~~~P~lIe~~tyR~~ 458 (933)
T 2jgd_A 407 YCTDIGKMVQAPIFHVNADDPEAVAFVTRLALDFRNTFKRDVFIDLVCYRRH 458 (933)
T ss_dssp CGGGGGGTTTCCEEEEETTCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCC
T ss_pred hHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHHHHhcCCCEEEEEeeeeec
Confidence 8999999999999999999999999999999999999999999999999974
No 7
>2yic_A 2-oxoglutarate decarboxylase; lyase; HET: TPP; 1.96A {Mycobacterium smegmatis} PDB: 2xta_A* 2y0p_A* 2xt9_A* 2yid_A*
Probab=100.00 E-value=6.1e-45 Score=394.41 Aligned_cols=255 Identities=15% Similarity=0.140 Sum_probs=215.8
Q ss_pred CCeeEEecCCCC-cc----cCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccCCchhHHHHHHHhhc--
Q 017890 106 VPCFRVLDDNGE-LI----KGSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAAL-- 178 (364)
Q Consensus 106 ~~~~rv~~~~g~-~~----~~~~~~~~s~e~l~~ly~~M~~~R~~D~~~~~~~rqGri~f~~~~~GqEa~~vg~a~aL-- 178 (364)
++...|.|.+++ .+ +... +.+++|+++++|+.|+++|.||+++.+++++|++. +..||||+++|+..+|
T Consensus 90 ~e~~~i~~~~~~~w~~~~~e~~~-~~~s~e~~~~~y~~m~~~R~fE~~l~~~~~~~k~~---g~~G~Ea~~~g~~~~l~~ 165 (868)
T 2yic_A 90 VEYTHILEPEQQRWIQERVETKH-DKPTVAEQKYILSKLNAAEAFETFLQTKYVGQKRF---SLEGAETVIPMMDAVIDQ 165 (868)
T ss_dssp EECTTCSCHHHHHHHHHHHSSCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHCSSCGGG---CCTTCTTHHHHHHHHHHH
T ss_pred cceeccCChHHhHHHHHHhccCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc---cCCChHHHHHHHHHHHHH
Confidence 355567777776 22 2122 68999999999999999999999999999988752 3499999999998764
Q ss_pred ----CCCcEEEc-cCCchhHHHh--cCCCHHHHHHHHhcCCCCC-C-CCCCCccccCCCc------------ccccccCC
Q 017890 179 ----SADDFILP-QYREPGVLLW--RGYTLQQFANQVFANKADD-G-KGRQMPIHYGSKK------------LNYITISS 237 (364)
Q Consensus 179 ----~~~D~v~~-~yR~~g~ll~--rG~~~~~~l~~~~g~~~~~-~-~Gr~mp~H~~~~~------------~~~~~~sg 237 (364)
+++|+|++ +||+|++.|+ +|++++++|++++|+.+++ + .|+++++|++... .++.+++|
T Consensus 166 ~~~l~~~D~v~gm~hRg~~~~Lan~~G~~~~~i~ae~~G~~~g~~~~g~gdv~~Hlg~~~~~~~~~g~~~v~l~l~~n~s 245 (868)
T 2yic_A 166 CAEHGLDEVVIAMPHRGRLNVLANIVGKPYSQIFSEFEGNLNPSQAHGSGDVKYHLGATGTYIQMFGDNDIEVSLTANPS 245 (868)
T ss_dssp HHHTTCSEEEEECCSTTHHHHHHHTTCCCHHHHTTTCC------------CGGGTCCEEEEEECSSSSCEEEEEECCCCS
T ss_pred hhhCCCCCEEEeccccchHHHHHHHhCCCHHHHHHHhcCCCCCCccCCCCCccccCCccccccccCCCcceeeeecCCCc
Confidence 58999998 8999999999 9999999999999998876 2 4678899987532 34667889
Q ss_pred CcccchhHHHHHHHHhhhcc----------CCCeEEEEeCCCcc-ccccHHHHHHHHHHcCCC---EEEEEEcCCccccc
Q 017890 238 PIATQLPQAVGVAYSLKMEK----------KDACAVAYTGDGGT-SEGDFHAALNFAAVMEAP---VVFICRNNGWAIST 303 (364)
Q Consensus 238 ~LG~~lp~AvG~A~A~k~~~----------~~~~vv~~~GDGa~-~eG~~~EALn~Aa~~~LP---vIfVV~NNg~ais~ 303 (364)
+||+++|+|+|+|+|.|+++ .+.++||++|||++ +||.+||+||+|+.+++| +||||+||+|++++
T Consensus 246 ~Lg~~~P~A~G~A~A~k~~~~~~~~~~~~~~~~~vv~~~GDGa~~~eG~v~Ealn~A~~~~lp~g~vi~iv~NN~~g~st 325 (868)
T 2yic_A 246 HLEAVDPVLEGLVRAKQDLLDTGEEGSDNRFSVVPLMLHGDAAFAGQGVVAETLNLALLRGYRTGGTIHIVVNNQIGFTT 325 (868)
T ss_dssp STTTTHHHHHHHHHHHHHHHTCSTTSSSCSCCEEEEEEEEHHHHHHCHHHHHHHTTTTCTTTCCSCCEEEEEECSCBTTB
T ss_pred cccccccHHHHHHHHHHhhccCCcccccccCCceEEEEECCcccccccHHHHHHHHHHhcCCCCCCeEEEEEcCCccccc
Confidence 99999999999999999864 56799999999996 899999999999999998 99999999999999
Q ss_pred ccccccCCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeeccC
Q 017890 304 NISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNFLW 364 (364)
Q Consensus 304 ~~~~~~~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R~~ 364 (364)
+...+.+..++.+++++|||++++|||||+++|++|+++|++++|++++|+|||++|||.+
T Consensus 326 ~~~~~~s~~~~~~~a~a~G~p~~~VdG~D~~av~~a~~~A~~~ar~~~~PvlIe~~tyR~~ 386 (868)
T 2yic_A 326 APTDSRSSEYCTDVAKMIGAPIFHVNGDDPEACAWVARLAVDFRQAFKKDVVIDMLCYRRR 386 (868)
T ss_dssp CHHHHCSSSSTTGGGGGGTCCEEEEETTCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCS
T ss_pred CccccccccCHHHHHHhCCCcEEEEeCCCHHHHHHHHHHHHHHHHhCCCCEEEEEEeecCC
Confidence 8765656677889999999999999999999999999999999999999999999999974
No 8
>2xt6_A 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET: TPP; 2.74A {Mycobacterium smegmatis}
Probab=100.00 E-value=6.6e-44 Score=394.55 Aligned_cols=254 Identities=15% Similarity=0.130 Sum_probs=214.4
Q ss_pred CeeEEecCCCC-cc----cCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccCCchhHHHHHHHhh----
Q 017890 107 PCFRVLDDNGE-LI----KGSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAA---- 177 (364)
Q Consensus 107 ~~~rv~~~~g~-~~----~~~~~~~~s~e~l~~ly~~M~~~R~~D~~~~~~~rqGri~f~~~~~GqEa~~vg~a~a---- 177 (364)
+...|.|.+++ .+ +... +.+++|+++++|+.|+++|.||+++.+++++|++. +..||||+++|+..+
T Consensus 336 e~~~i~~~~~~~w~~~~~e~~~-~~~s~e~~~~~y~~m~~~r~fE~~l~~~~~~~k~~---g~~GqEa~~~g~~~~l~~~ 411 (1113)
T 2xt6_A 336 EYTHILEPEQQRWIQERVETKH-DKPTVAEQKYILSKLNAAEAFETFLQTKYVGQKRF---SLEGAETVIPMMDAVIDQC 411 (1113)
T ss_dssp ECTTCSCHHHHHHHHHHHHSCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHCSSCGGG---CCTTCTTHHHHHHHHHHHH
T ss_pred ceeccCCHHHhHHHHHHhhcCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc---cCCChHHHHHHHHHHHHHh
Confidence 44567787776 22 1122 68999999999999999999999999999988752 239999999999777
Q ss_pred --cCCCcEEEc-cCCchhHHHh--cCCCHHHHHHHHhcCCCCC-C-CCCCCccccCCCc------------ccccccCCC
Q 017890 178 --LSADDFILP-QYREPGVLLW--RGYTLQQFANQVFANKADD-G-KGRQMPIHYGSKK------------LNYITISSP 238 (364)
Q Consensus 178 --L~~~D~v~~-~yR~~g~ll~--rG~~~~~~l~~~~g~~~~~-~-~Gr~mp~H~~~~~------------~~~~~~sg~ 238 (364)
|+++|+|++ +||+|++.|+ +|++++++|++++|+.+++ + .|+++++|++... .++.+++|+
T Consensus 412 ~~l~~~D~v~gm~hRg~~~~La~~~G~~~~~i~ae~~G~~~g~~~~g~gdv~~Hlg~~~~~~~~~g~~~v~l~l~~n~s~ 491 (1113)
T 2xt6_A 412 AEHGLDEVVIAMPHRGRLNVLANIVGKPYSQIFSEFEGNLNPSQAHGSGDVKYHLGATGTYIQMFGDNDIEVSLTANPSH 491 (1113)
T ss_dssp HHTTCSEEEEECCSTTHHHHHHHTTCCCHHHHSTTC-------------CGGGTCCEEEEEECSSSSCEEEEEECCCCSS
T ss_pred hhCCCCCEEEeccccchHHHHHHHhCCCHHHHHHHhcCCCCCCccCCCCCccccCCccccccccCCCcceeeeecCCCcc
Confidence 558999998 7999999999 9999999999999998876 2 4678899987532 345678899
Q ss_pred cccchhHHHHHHHHhhhcc----------CCCeEEEEeCCCcc-ccccHHHHHHHHHHcCCC---EEEEEEcCCcccccc
Q 017890 239 IATQLPQAVGVAYSLKMEK----------KDACAVAYTGDGGT-SEGDFHAALNFAAVMEAP---VVFICRNNGWAISTN 304 (364)
Q Consensus 239 LG~~lp~AvG~A~A~k~~~----------~~~~vv~~~GDGa~-~eG~~~EALn~Aa~~~LP---vIfVV~NNg~ais~~ 304 (364)
||+++|+|+|+|+|.|+++ .+.++||++|||++ +||.+||+||+|+.+++| +||||+||+|+++++
T Consensus 492 Lg~~~p~A~G~A~A~k~~~~~~~~~~~~~~~~~~v~~~GDGa~~~eG~~~Ealn~A~~~~lp~g~vi~iv~NN~~gist~ 571 (1113)
T 2xt6_A 492 LEAVDPVLEGLVRAKQDLLDTGEEGSDNRFSVVPLMLHGDAAFAGQGVVAETLNLALLRGYRTGGTIHIVVNNQIGFTTA 571 (1113)
T ss_dssp TTTTHHHHHHHHHHHHHHTTBSTTSSBSCCCEEEEEEEEHHHHHHCTHHHHHHTTTTCTTTCCSCCEEEEEECSCBTTBC
T ss_pred ccccccHHHHHHHHHHHhccccCccccccCCcEEEEEECCcccccccHHHHHHHHHhhcCCCCCCeEEEEEeCCcccccC
Confidence 9999999999999999865 56899999999995 899999999999999998 999999999999998
Q ss_pred cccccCCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeeccC
Q 017890 305 ISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNFLW 364 (364)
Q Consensus 305 ~~~~~~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R~~ 364 (364)
...+.+..++.+++++|||++++|||||+++|++|+++|++++|++++|+|||++|||.+
T Consensus 572 ~~~~~s~~~~~~~a~a~G~p~~~VdG~D~~av~~a~~~A~~~~r~~~~PvlIe~~tyR~~ 631 (1113)
T 2xt6_A 572 PTDSRSSEYCTDVAKMIGAPIFHVNGDDPEACAWVARLAVDFRQAFKKDVVIDMLCYRRR 631 (1113)
T ss_dssp HHHHCSSSSTTGGGGGGTCCEEEEETTCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCS
T ss_pred ccccccccCHHHHHHhcCCcEEEEcCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEeEccC
Confidence 665555566789999999999999999999999999999999999999999999999974
No 9
>2o1s_A 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thiamine, isoprenoid, transferase; HET: TDP; 2.40A {Escherichia coli}
Probab=99.98 E-value=1.3e-32 Score=289.34 Aligned_cols=226 Identities=17% Similarity=0.193 Sum_probs=173.1
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccCCchhHHHHHHHhhcC-CCcEEE--ccCCchhHH
Q 017890 118 LIKGSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALS-ADDFIL--PQYREPGVL 194 (364)
Q Consensus 118 ~~~~~~~~~~s~e~l~~ly~~M~~~R~~D~~~~~~~rqGri~f~~~~~GqEa~~vg~a~aL~-~~D~v~--~~yR~~g~l 194 (364)
+-.+.+.++++.+++.++|+.| |.++..+. +++ .++++++.|+|++.+++..+++ ++|+++ ..||+++++
T Consensus 14 i~~p~d~~~l~~~~l~~l~~~i---R~~~~~~~--~~~--~Gh~~~~lg~~~~~~~l~~~~~~~~D~~v~~~gH~~y~~~ 86 (621)
T 2o1s_A 14 VDSTQELRLLPKESLPKLCDEL---RRYLLDSV--SRS--SGHFASGLGTVELTVALHYVYNTPFDQLIWDVGHQAYPHK 86 (621)
T ss_dssp CSSHHHHTTSCGGGHHHHHHHH---HHHHHHHS--CGG--GCTHHHHHTTHHHHHHHHHHSCTTTSEEEESSSTTCHHHH
T ss_pred cCChHHhhhCCHHHHHHHHHHH---HHHHHHHH--hhc--CCCcCCChhHHHHHHHHHhccCCCCCEEEEeCchHHHHHH
Confidence 3334455689999999999987 66554444 232 3688899999999999999999 899999 679999999
Q ss_pred HhcCCCHHHHHHHHhcCCCCCCCCCCCccccCCCc-ccccccCCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCcccc
Q 017890 195 LWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKK-LNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSE 273 (364)
Q Consensus 195 l~rG~~~~~~l~~~~g~~~~~~~Gr~mp~H~~~~~-~~~~~~sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~e 273 (364)
+.+|. .++ +..+.. .|+ ++.|+...+ .+....+|+||+++|+|+|+|+|.|+++++++|||++|||++++
T Consensus 87 ~l~G~-~~~-~~~~r~------~~g-~~g~~~~~~s~~~~~~~G~~G~gl~~A~G~AlA~~~~~~~~~Vv~v~GDG~~~~ 157 (621)
T 2o1s_A 87 ILTGR-RDK-IGTIRQ------KGG-LHPFPWRGESEYDVLSVGHSSTSISAGIGIAVAAEKEGKNRRTVCVIGDGAITA 157 (621)
T ss_dssp HTTTT-GGG-GGGTTS------TTS-CCSSCCTTTCTTCCSCCSSSSCHHHHHHHHHHHHHHHTSCCCEEEEEETTGGGS
T ss_pred HHhCC-Hhh-hhcccc------cCC-CCCCCCCCCCCCCccCCcccchHHHHHHHHHHHHHHhCCCCeEEEEEchhhhhc
Confidence 99998 222 222221 222 345655433 33445689999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCC----------------------------------ccH-----
Q 017890 274 GDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRS----------------------------------DGI----- 314 (364)
Q Consensus 274 G~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~~~~~----------------------------------~~i----- 314 (364)
|.+||+||+|+.+++|+||||+||+|++++++..+... .++
T Consensus 158 G~~~EaL~~A~~~~~pli~vvnnN~~~i~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~p~~~~~~~r~~~~~~~~~ 237 (621)
T 2o1s_A 158 GMAFEAMNHAGDIRPDMLVILNDNEMSISENVGALNNHLAQLLSGKLYSSLREGGKKVFSGVPPIKELLKRTEEHIKGMV 237 (621)
T ss_dssp HHHHHHHHHHHHHCCSEEEEEEECC-------------------------------------------------------
T ss_pred cHHHHHHHHHHhhCCCEEEEEeCCCcccCCCcchHHHHHHhhhcchhHHHHHHHHHHHHhccchHHHHHHHHHHHhhhcc
Confidence 99999999999999999999999999999876542210 011
Q ss_pred --HHHHhhcCeEEE-EEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeecc
Q 017890 315 --VVKGRAYGIRSI-RVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNFL 363 (364)
Q Consensus 315 --a~~a~a~G~~~~-~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R~ 363 (364)
..++++|||+++ +|||||++++++++++|++ .++|+|||++|+|-
T Consensus 238 ~p~~~~ea~G~~~~g~vdG~d~~~l~~al~~A~~----~~gP~lI~v~t~kg 285 (621)
T 2o1s_A 238 VPGTLFEELGFNYIGPVDGHDVLGLITTLKNMRD----LKGPQFLHIMTKKG 285 (621)
T ss_dssp -CHHHHHHTTCEEEEEEETTCHHHHHHHHHHHHH----SCSEEEEEEECCCT
T ss_pred ChhhHHHHCCCeEeeeeCCCCHHHHHHHHHHHHH----cCCCEEEEEEEecc
Confidence 478999999999 9999999999999998876 57999999999874
No 10
>2o1x_A 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, isoprenoid, DXS, transferase; HET: TDP; 2.90A {Deinococcus radiodurans}
Probab=99.96 E-value=2.5e-30 Score=272.36 Aligned_cols=222 Identities=18% Similarity=0.181 Sum_probs=168.4
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccCCchhHHHHHHHhhcC-CCcEEEccCCchh---HHHh
Q 017890 121 GSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALS-ADDFILPQYREPG---VLLW 196 (364)
Q Consensus 121 ~~~~~~~s~e~l~~ly~~M~~~R~~D~~~~~~~rqGri~f~~~~~GqEa~~vg~a~aL~-~~D~v~~~yR~~g---~ll~ 196 (364)
+.+.+.++.+++.++|+.| |.+...+.. + ..++++++.|+-.+.+++...++ ++|+++.. |+|+ +.++
T Consensus 19 p~d~~~l~~~~l~~l~~~i---R~~~~~~~~--~--~~Gh~~~~lg~v~l~~aL~~~~~~~~D~~v~~-~GH~~y~~~~l 90 (629)
T 2o1x_A 19 PKDLKRLSREQLPALTEEL---RGEIVRVCS--R--GGLHLASSLGAVDIITALHYVLDSPRDRILFD-VGHQAYAHKIL 90 (629)
T ss_dssp HHHHTTSCGGGHHHHHHHH---HHHHHHHHT--T--SSSCHHHHHHTHHHHHHHHHHSCTTTSEEEES-SSTTCHHHHHT
T ss_pred hhhhhhCCHHHHHHHHHHH---HHHHHHHHH--h--cCCcCCCchhHHHHHHHHHhhcCCCCCeEEec-CchHHHHHHHH
Confidence 3445679999999999998 655433332 2 24688889999555555444458 89999999 9996 5667
Q ss_pred cCCCHHHHHHHHhcCCCCCCCCCCCccccCCCc-ccccccCCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCcccccc
Q 017890 197 RGYTLQQFANQVFANKADDGKGRQMPIHYGSKK-LNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGD 275 (364)
Q Consensus 197 rG~~~~~~l~~~~g~~~~~~~Gr~mp~H~~~~~-~~~~~~sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~ 275 (364)
.|. .+.+..+ .+ .++ +++|+..++ .+..+.+|+||+++|+|+|+|+|.|+++++++|||++|||++++|.
T Consensus 91 ~G~--~~~~~~~-r~-----~~g-~~G~p~~~~s~~~~~~~G~~G~gl~~AvG~AlA~k~~~~~~~Vv~v~GDG~~~~G~ 161 (629)
T 2o1x_A 91 TGR--RDQMADI-KK-----EGG-ISGFTKVSESEHDAITVGHASTSLTNALGMALARDAQGKDFHVAAVIGDGSLTGGM 161 (629)
T ss_dssp TTT--GGGGGGT-TS-----TTS-CCSSCCGGGCTTCCSCCSSSSCHHHHHHHHHHHHHHHTCCCCEEEEEETTGGGSHH
T ss_pred hCc--HhHHhCc-cc-----CCC-CCCCCCCCCCCCCCcCCCcccccHhHHHHHHHHHHHhCCCCeEEEEEchhhhhccH
Confidence 776 1112221 11 111 234543322 3556778999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCEEEEEEcCCcccccccccccC--------------------------C---------cc-H-----
Q 017890 276 FHAALNFAAVMEAPVVFICRNNGWAISTNISEQFR--------------------------S---------DG-I----- 314 (364)
Q Consensus 276 ~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~~~~--------------------------~---------~~-i----- 314 (364)
+||+||+|+.+++|+||||+||+|+|++++..+.. . .+ +
T Consensus 162 ~~EaL~~A~~~~~pli~IvnnN~~~i~~~~~~~~~~~~~l~~~~~y~~~~~~~~~~~~~~g~~~~~~~~~~~d~~~~~~~ 241 (629)
T 2o1x_A 162 ALAALNTIGDMGRKMLIVLNDNEMSISENVGAMNKFMRGLQVQKWFQEGEGAGKKAVEAVSKPLADFMSRAKNSTRHFFD 241 (629)
T ss_dssp HHHHHHHHHHHCCSEEEEEEECSBSSSBCCSSHHHHC-------------------------------------------
T ss_pred HHHHHHHHHhhCCCEEEEEECCCCCCCCChhHHHHHHHHHhhchhHHHHHHHHHHHHhccchHHHHHHHHHHHHHHhhcC
Confidence 99999999999999999999999999887652210 0 02 3
Q ss_pred -H--HHHhhcCeEEE-EEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeecc
Q 017890 315 -V--VKGRAYGIRSI-RVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNFL 363 (364)
Q Consensus 315 -a--~~a~a~G~~~~-~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R~ 363 (364)
. +++++|||+++ +|||||++++++++++|++ .++|+|||++|++-
T Consensus 242 p~~~~~~ea~G~~~~g~vdG~d~~~l~~al~~A~~----~~~P~lI~v~t~kg 290 (629)
T 2o1x_A 242 PASVNPFAAMGVRYVGPVDGHNVQELVWLLERLVD----LDGPTILHIVTTKG 290 (629)
T ss_dssp --CCCTTGGGTCEEEEEEESSCHHHHHHHHHHHTT----SSSEEEEEEECCTT
T ss_pred cccchHHHhcCCeEEeeECCcCHHHHHHHHHHHHh----cCCCEEEEEEEecC
Confidence 3 78999999999 9999999999999988754 57999999999863
No 11
>3rim_A Transketolase, TK; TPP, transferase; HET: TPP; 2.49A {Mycobacterium tuberculosis}
Probab=99.95 E-value=8.1e-28 Score=255.75 Aligned_cols=209 Identities=18% Similarity=0.231 Sum_probs=160.5
Q ss_pred HHHHHHHHHHHHhcCcccccccCCchhHHHHHHHhhcC---------CCcEEEcc--CCc---hhHHHhcCC--CHHHHH
Q 017890 142 LQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALS---------ADDFILPQ--YRE---PGVLLWRGY--TLQQFA 205 (364)
Q Consensus 142 ~R~~D~~~~~~~rqGri~f~~~~~GqEa~~vg~a~aL~---------~~D~v~~~--yR~---~g~ll~rG~--~~~~~l 205 (364)
+|.+=-.+......|.++-.++. -|.+.+.....|+ +.|.++.+ |-. .+++...|+ +.++ |
T Consensus 30 iR~~~~~~v~~a~sGH~g~~ls~--a~i~~~L~~~~l~~~p~~p~~~~rDrfvls~GH~s~~lYa~l~l~G~~~~~~~-l 106 (700)
T 3rim_A 30 IRVLAADAVQKVGNGHPGTAMSL--APLAYTLFQRTMRHDPSDTHWLGRDRFVLSAGHSSLTLYIQLYLGGFGLELSD-I 106 (700)
T ss_dssp HHHHHHHHHHHHTCSCCHHHHHT--HHHHHHHHHTTCCCCTTCTTCTTCCEEEESSTTCHHHHHHHHHHTTSSCCHHH-H
T ss_pred HHHHHHHHHHHhCCCCCCccHHH--HHHHHHHHHHHhCCCCCCCCCCCCCeEEECCCchhHHHHHHHHHhCCCCCHHH-H
Confidence 44333223333345665533333 3344433334565 35866653 444 234555775 4444 5
Q ss_pred HHHhcCCCCCCCCCCCccccCCC-cccccccCCCcccchhHHHHHHHHhhhc-------------cCCCeEEEEeCCCcc
Q 017890 206 NQVFANKADDGKGRQMPIHYGSK-KLNYITISSPIATQLPQAVGVAYSLKME-------------KKDACAVAYTGDGGT 271 (364)
Q Consensus 206 ~~~~g~~~~~~~Gr~mp~H~~~~-~~~~~~~sg~LG~~lp~AvG~A~A~k~~-------------~~~~~vv~~~GDGa~ 271 (364)
..++. .|+.+|+|+... .+++...+|+||+++|+|+|+|+|.|+. +.+++|+|++|||++
T Consensus 107 ~~fr~------~gs~~~ghp~~~~~pgv~~~tG~lG~gl~~AvG~AlA~k~~~~~~~~~~~~~~~~~~~~v~~~~GDG~l 180 (700)
T 3rim_A 107 ESLRT------WGSKTPGHPEFRHTPGVEITTGPLGQGLASAVGMAMASRYERGLFDPDAEPGASPFDHYIYVIASDGDI 180 (700)
T ss_dssp TTTTS------TTCSCCSSCCBTTBTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCTTSCTTCSTTCCCEEEEEEHHHH
T ss_pred HHhhc------CCCCCCCCCCCCCCCCccccccccCCcchHHHHHHHHHHHHhhhccccccccccCCCCeEEEEECCccc
Confidence 55542 577889999864 4688888999999999999999999974 467899999999999
Q ss_pred ccccHHHHHHHHHHcCCC-EEEEEEcCCcccccccccccCCccHHHHHhhcCeEEEEE-eCCCHHHHHHHHHHHHHHhhc
Q 017890 272 SEGDFHAALNFAAVMEAP-VVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRV-DGNDALAVYTAVQAAREMAIS 349 (364)
Q Consensus 272 ~eG~~~EALn~Aa~~~LP-vIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~~~~V-DGnD~~av~~a~~~A~~~ar~ 349 (364)
+||.+|||+++|+.++|| +|+||+||+|+|++++.... .+++.+++++|||++++| ||||+++|++|+++|++ .
T Consensus 181 ~eG~~~EAl~~A~~~~L~nli~i~d~N~~si~~~~~~~~-~~~~~~~~~a~G~~~~~V~DG~D~~al~~Al~~A~~---~ 256 (700)
T 3rim_A 181 EEGVTSEASSLAAVQQLGNLIVFYDRNQISIEDDTNIAL-CEDTAARYRAYGWHVQEVEGGENVVGIEEAIANAQA---V 256 (700)
T ss_dssp HSHHHHHHHHHHHHTTCTTEEEEEEECSEETTEEGGGTC-CCCHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHH---C
T ss_pred ccChHHHHHHHHHHcCCCcEEEEEECCCcccccchhhcc-chhHHHHHHHcCCeEEEECCCCCHHHHHHHHHHHHH---c
Confidence 999999999999999995 99999999999999988654 688999999999999999 99999999999999875 3
Q ss_pred CCCcEEEEEEeecc
Q 017890 350 EKRPVLVEVRLNFL 363 (364)
Q Consensus 350 ~~~P~LIea~T~R~ 363 (364)
.++|+||+|+|+|-
T Consensus 257 ~~~P~lI~~~T~kG 270 (700)
T 3rim_A 257 TDRPSFIALRTVIG 270 (700)
T ss_dssp CSSCEEEEEECCTT
T ss_pred CCCCEEEEEEEEee
Confidence 68999999999974
No 12
>1r9j_A Transketolase; domains, EACH of the alpha/beta type, thiamine diphosphate binding domain, transferase; HET: TPP; 2.22A {Leishmania mexicana mexicana} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=99.95 E-value=6.9e-27 Score=248.05 Aligned_cols=204 Identities=18% Similarity=0.195 Sum_probs=158.7
Q ss_pred HHHHHhcCcccccccCCchhHHHHHHHhhcCC---------CcEEEcc--CCc---hhHHHhcCC-CHHHHHHHHhcCCC
Q 017890 149 LYEAQRQGRFSFYLTTIGEEAINIGSAAALSA---------DDFILPQ--YRE---PGVLLWRGY-TLQQFANQVFANKA 213 (364)
Q Consensus 149 ~~~~~rqGri~f~~~~~GqEa~~vg~a~aL~~---------~D~v~~~--yR~---~g~ll~rG~-~~~~~l~~~~g~~~ 213 (364)
+......|.++-.+++ -|.+.+.....|+. .|.++.+ |-. .+++...|+ ...+-|..+..
T Consensus 20 ~v~~a~~GH~g~~ls~--a~~~~~L~~~~l~~~p~~p~~~~rDrfvls~GH~~~~lYa~l~l~G~~~~~~~l~~~r~--- 94 (673)
T 1r9j_A 20 IVQGGKSGHPGTPMGM--APMSAVLWTEVMKYNSQDPDWVDRDRFVMSNGHGCALQYALLHMAGYNLTMDDLKGFRQ--- 94 (673)
T ss_dssp HHHHHTCSCCHHHHHT--HHHHHHHHHTTCCCCTTCTTCTTCCEEEESSGGGHHHHHHHHHHHTCSCCHHHHHTTTS---
T ss_pred HHHHcCCCCcchhHHH--HHHHHHHHHHhhCCCCCCCCCCCCCeEEEccccHHHHHHHHHHHcCCCCCHHHHHhhcc---
Confidence 3333356766544443 34444444434442 3655543 333 234455687 44455555542
Q ss_pred CCCCCCCCccccCCCc-ccccccCCCcccchhHHHHHHHHhhhcc----------CCCeEEEEeCCCccccccHHHHHHH
Q 017890 214 DDGKGRQMPIHYGSKK-LNYITISSPIATQLPQAVGVAYSLKMEK----------KDACAVAYTGDGGTSEGDFHAALNF 282 (364)
Q Consensus 214 ~~~~Gr~mp~H~~~~~-~~~~~~sg~LG~~lp~AvG~A~A~k~~~----------~~~~vv~~~GDGa~~eG~~~EALn~ 282 (364)
.|+.+|+|+.... +++...+|+||+++|.|+|+|+|.|+.+ .+++|+|++|||+++||.+|||+++
T Consensus 95 ---~~s~~~ghp~~~~~pgv~~~tG~lG~gl~~AvG~AlA~~~~~~~~n~~g~~~~d~~v~~~~GDG~~~eG~~~Eal~~ 171 (673)
T 1r9j_A 95 ---DGSRTPGHPERFVTPGVEVTTGPLGQGIANAVGLAIAEAHLAATFNRPGYNIVDHYTYVYCGDGCLMEGVCQEALSL 171 (673)
T ss_dssp ---TTCSCCSSCCTTTSTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHH
T ss_pred ---CCCCCCCCCCCCCCCCeeeccCCCCCcHHHHHHHHHHHHHhhhhccccccCCCCCEEEEEECcchhcccHHHHHHHH
Confidence 4778899998653 6788889999999999999999998765 5889999999999999999999999
Q ss_pred HHHcCCC-EEEEEEcCCcccccccccccCCccHHHHHhhcCeEEE-EEeC-CCHHHHHHHHHHHHHHhhcCCCcEEEEEE
Q 017890 283 AAVMEAP-VVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSI-RVDG-NDALAVYTAVQAAREMAISEKRPVLVEVR 359 (364)
Q Consensus 283 Aa~~~LP-vIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~~~-~VDG-nD~~av~~a~~~A~~~ar~~~~P~LIea~ 359 (364)
|++++|| +|+||+||+|+|++++..+. .+++.+++++|||+++ +||| ||++++++|+++|++ ..++|+||+++
T Consensus 172 A~~~~L~~li~i~d~N~~~i~~~~~~~~-~~d~~~~~~a~G~~~~~~vdG~~d~~~l~~Al~~A~~---~~~~P~lI~~~ 247 (673)
T 1r9j_A 172 AGHLALEKLIVIYDSNYISIDGSTSLSF-TEQCHQKYVAMGFHVIEVKNGDTDYEGLRKALAEAKA---TKGKPKMIVQT 247 (673)
T ss_dssp HHHHTCTTEEEEEEECSBCSSSBGGGTC-CCCHHHHHHHTTCEEEEESCTTTCHHHHHHHHHHHHH---CCSSCEEEEEE
T ss_pred HHHhCCCcEEEEEECCCCccccchhhcc-CHhHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHHHHH---cCCCCEEEEEe
Confidence 9999996 99999999999999988776 6899999999999999 8999 999999999998875 36799999999
Q ss_pred eeccC
Q 017890 360 LNFLW 364 (364)
Q Consensus 360 T~R~~ 364 (364)
|+|-+
T Consensus 248 T~kg~ 252 (673)
T 1r9j_A 248 TTIGF 252 (673)
T ss_dssp CCTTT
T ss_pred ccccc
Confidence 99853
No 13
>3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis sugar metaboli transferase; HET: TPP; 1.75A {Homo sapiens} PDB: 3ooy_A*
Probab=99.95 E-value=1.2e-26 Score=244.10 Aligned_cols=224 Identities=18% Similarity=0.139 Sum_probs=164.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccCCchhHHHHHHHhhcC---------CCcEEEcc--CCc---h
Q 017890 126 QVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALS---------ADDFILPQ--YRE---P 191 (364)
Q Consensus 126 ~~s~e~l~~ly~~M~~~R~~D~~~~~~~rqGri~f~~~~~GqEa~~vg~a~aL~---------~~D~v~~~--yR~---~ 191 (364)
.+++....+|=+....+|.+=-.+......|.++--++. -|.+.+.....|+ +.|.++.+ |-. .
T Consensus 4 ~~~~~~~~~l~~~a~~iR~~~i~~~~~~~~GH~g~~l~~--~e~~~~L~~~~~~~~~~~p~~~~rDr~v~s~GH~~~~ly 81 (616)
T 3mos_A 4 KPDQQKLQALKDTANRLRISSIQATTAAGSGHPTSCCSA--AEIMAVLFFHTMRYKSQDPRNPHNDRFVLSKGHAAPILY 81 (616)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCHHHHHTT--HHHHHHHHHTTCBCCTTCTTCTTSCEEEESSGGGHHHHH
T ss_pred cccccCHHHHHHHHHHHHHHHHHHHHhcCCCcCCcchhH--HHHHHHHHHHhhccCCCCCCCCCCCeEEEcCccHHHHHH
Confidence 566666666655555666544333333334554422222 3333322223342 25876654 333 1
Q ss_pred hHHHhcCCCHHHHHHHHhcCCCCCCCCCCCccccCCCcccccccCCCcccchhHHHHHHHHhhhccC-CCeEEEEeCCCc
Q 017890 192 GVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKK-DACAVAYTGDGG 270 (364)
Q Consensus 192 g~ll~rG~~~~~~l~~~~g~~~~~~~Gr~mp~H~~~~~~~~~~~sg~LG~~lp~AvG~A~A~k~~~~-~~~vv~~~GDGa 270 (364)
+++...|+...+.|..++ ..|+.+++|+....+++...+|+||+++|+|+|+|+|.|+.+. +++|||++|||+
T Consensus 82 ~~~~l~G~~~~~~l~~~r------~~~s~l~ghp~~~~~~~d~~~G~lG~gl~~A~G~AlA~~~~~~~~~~vv~v~GDG~ 155 (616)
T 3mos_A 82 AVWAEAGFLAEAELLNLR------KISSDLDGHPVPKQAFTDVATGSLGQGLGAACGMAYTGKYFDKASYRVYCLLGDGE 155 (616)
T ss_dssp HHHHHTTSSCGGGGGGTT------CTTCSCCSSCCTTSTTCSSCCCSTTCHHHHHHHHHHHHHHTSCCSCCEEEEEETGG
T ss_pred HHHHHcCCCCHHHHHHhc------cCCCCCCCCCCCCCCcccccccccCCccHHHHHHHHHHHHhCCCCCEEEEEECccc
Confidence 244557863334444543 2577899999876677777899999999999999999986554 589999999999
Q ss_pred cccccHHHHHHHHHHcCCC-EEEEEEcCCcccccccccccCCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhc
Q 017890 271 TSEGDFHAALNFAAVMEAP-VVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAIS 349 (364)
Q Consensus 271 ~~eG~~~EALn~Aa~~~LP-vIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~ 349 (364)
+++|.+||+|++|+.++|| +|+|++||+|++++++......+++.+++++|||++++|||||++++.++++++
T Consensus 156 ~~eG~~~Eal~~A~~~~l~~livi~nnN~~~i~~~~~~~~~~~~~~~~~~a~G~~~~~VdG~d~~~l~~al~~~------ 229 (616)
T 3mos_A 156 LSEGSVWEAMAFASIYKLDNLVAILDINRLGQSDPAPLQHQMDIYQKRCEAFGWHAIIVDGHSVEELCKAFGQA------ 229 (616)
T ss_dssp GGSHHHHHHHHHHHHTTCTTEEEEEEECSBCSSSBCTTTTCHHHHHHHHHHTTCEEEEEETTCHHHHHHHHHSC------
T ss_pred cccCcHHHHHHHHHHcCCCcEEEEEECCCCCCcCCcccccChHHHHHHHHHcCCeEEEEcCCCHHHHHHHHHhc------
Confidence 9999999999999999996 789999999999998877776678999999999999999999999999998543
Q ss_pred CCCcEEEEEEeecc
Q 017890 350 EKRPVLVEVRLNFL 363 (364)
Q Consensus 350 ~~~P~LIea~T~R~ 363 (364)
.++|+|||++|+|-
T Consensus 230 ~~~P~lI~v~T~kg 243 (616)
T 3mos_A 230 KHQPTAIIAKTFKG 243 (616)
T ss_dssp CSSCEEEEEECCTT
T ss_pred CCCCEEEEEEEecc
Confidence 47999999999985
No 14
>3l84_A Transketolase; TKT, structural genomics, center for structur genomics of infectious diseases, csgid, transferase; HET: MSE; 1.36A {Campylobacter jejuni} PDB: 3m6l_A* 3m34_A* 3m7i_A*
Probab=99.94 E-value=1.2e-26 Score=244.67 Aligned_cols=173 Identities=19% Similarity=0.277 Sum_probs=143.3
Q ss_pred CCcEEEcc--CCc---hhHHHhcCC-CHHHHHHHHhcCCCCCCCCCCCccccCCCcccccccCCCcccchhHHHHHHHHh
Q 017890 180 ADDFILPQ--YRE---PGVLLWRGY-TLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSL 253 (364)
Q Consensus 180 ~~D~v~~~--yR~---~g~ll~rG~-~~~~~l~~~~g~~~~~~~Gr~mp~H~~~~~~~~~~~sg~LG~~lp~AvG~A~A~ 253 (364)
+.|.++.+ |-. .++++..|+ ...+-|.+++. .|+..+.|+....+++...+|+||+++|.|+|+|+|.
T Consensus 57 ~rDrfvls~GH~~~~lYa~l~l~G~~~~~~~l~~~r~------~~s~~~ghp~~~~~g~~~~tG~lG~gl~~AvG~AlA~ 130 (632)
T 3l84_A 57 NRDRLVFSGGHASALLYSFLHLSGYDLSLEDLKNFRQ------LHSKTPGHPEISTLGVEIATGPLGQGVANAVGFAMAA 130 (632)
T ss_dssp TSCEEEESSGGGHHHHHHHHHHHTCSCCHHHHTTTTC------TTCSSCSSCCTTSTTCCSCCCSTTHHHHHHHHHHHHH
T ss_pred CCCEEEEcCCcccHHHHHHHHHhCCCCCHHHHHHHhc------CCCCCCCCCCCCCCCcccCCcchhhHHHHHHHHHHHH
Confidence 46877664 444 234555675 33333555542 4666788988745688888999999999999999999
Q ss_pred hhccC-------CCeEEEEeCCCccccccHHHHHHHHHHcCCC-EEEEEEcCCcccccccccccCCccHHHHHhhcCeEE
Q 017890 254 KMEKK-------DACAVAYTGDGGTSEGDFHAALNFAAVMEAP-VVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRS 325 (364)
Q Consensus 254 k~~~~-------~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LP-vIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~~ 325 (364)
|+++. +++|||++|||+++||.+||++++|++++|| +|+|++||+|+|++++.... .+++.+++++|||++
T Consensus 131 ~~~~~~~n~~~~d~~v~~v~GDG~~~eG~~~Eal~~A~~~~L~~livi~nnN~~~i~~~~~~~~-~~d~~~~~~a~G~~~ 209 (632)
T 3l84_A 131 KKAQNLLGSDLIDHKIYCLCGDGDLQEGISYEACSLAGLHKLDNFILIYDSNNISIEGDVGLAF-NENVKMRFEAQGFEV 209 (632)
T ss_dssp HHHHHHHCTTTCCCCEEEEEEHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSEETTEEGGGTC-CCCHHHHHHHTTCEE
T ss_pred HhhccccccCCCCCeEEEEECCcchhhccHHHHHHHHHHcCCCcEEEEEECCCcccccchhhhc-ChhHHHHHHHcCCeE
Confidence 97653 8899999999999999999999999999996 89999999999999887654 578999999999999
Q ss_pred EEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeecc
Q 017890 326 IRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNFL 363 (364)
Q Consensus 326 ~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R~ 363 (364)
++|||||++++.+|+++|++ .++|+||+++|++-
T Consensus 210 ~~vdGhd~~~l~~al~~A~~----~~~P~lI~v~T~kG 243 (632)
T 3l84_A 210 LSINGHDYEEINKALEQAKK----STKPCLIIAKTTIA 243 (632)
T ss_dssp EEEETTCHHHHHHHHHHHHT----CSSCEEEEEECCTT
T ss_pred EEEeeCCHHHHHHHHHHHHh----CCCCEEEEEeeEee
Confidence 99999999999999988764 68999999999873
No 15
>1itz_A Transketolase; calvin cycle, cofactor, thiamine pyrophosphate, plant, transferase; HET: TPP; 2.30A {Zea mays} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=99.94 E-value=2.1e-26 Score=244.34 Aligned_cols=224 Identities=18% Similarity=0.207 Sum_probs=164.4
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccCCchhHHHHHHH-hhcC---------CCcEEEcc--CCc-
Q 017890 124 FQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSA-AALS---------ADDFILPQ--YRE- 190 (364)
Q Consensus 124 ~~~~s~e~l~~ly~~M~~~R~~D~~~~~~~rqGri~f~~~~~GqEa~~vg~a-~aL~---------~~D~v~~~--yR~- 190 (364)
-..++.++|.++ ...+|.+--.+......|.++- +.|.--+.+..- ..|+ +.|.++.+ |-.
T Consensus 8 ~~~l~~~~l~~~---a~~iR~~~~~~v~~a~~GH~g~---~l~~~~i~~~L~~~~~~~~p~~p~~~~rDr~vls~GH~~~ 81 (675)
T 1itz_A 8 GKAATGELLEKS---VNTIRFLAIDAVEKANSGHPGL---PMGCAPMGHVLYDEVMRYNPKNPYWFNRDRFVLSAGHGCM 81 (675)
T ss_dssp --CCCHHHHHHH---HHHHHHHHHHHHHHHTCSCCHH---HHHHHHHHHHHHHHTCCCCTTCTTCTTCCEEEESSGGGHH
T ss_pred cCCCCHHHHHHH---HHHHHHHHHHHHHHcCCCccCc---cHhHHHHHHHHHHHHhcCCcCCCCCCCCCeEEEcCcchHH
Confidence 457888888764 2344543323333334555442 333322322222 1233 23765543 333
Q ss_pred --hhHHHhcCC--CHHHHHHHHhcCCCCCCCCCCCccccCCCc-ccccccCCCcccchhHHHHHHHHhhhcc--------
Q 017890 191 --PGVLLWRGY--TLQQFANQVFANKADDGKGRQMPIHYGSKK-LNYITISSPIATQLPQAVGVAYSLKMEK-------- 257 (364)
Q Consensus 191 --~g~ll~rG~--~~~~~l~~~~g~~~~~~~Gr~mp~H~~~~~-~~~~~~sg~LG~~lp~AvG~A~A~k~~~-------- 257 (364)
.+++...|+ ...+-|..++. .|+..+.|+...+ +++...+|+||+++|+|+|+|+|.|+.+
T Consensus 82 ~lYa~l~l~G~~~~~~~~l~~~r~------~~~~~~ghp~~~~~~~~~~~~G~lG~gl~~AvG~AlA~~~~~~~~n~~~~ 155 (675)
T 1itz_A 82 LQYALLHLAGYDSVKEEDLKQFRQ------WGSRTPGHPENFETPGVEVTTGPLGQGIANAVGLALAEKHLAARFNKPDS 155 (675)
T ss_dssp HHHHHHHHHTCTTCCHHHHTTTTS------TTCSSCSSCCTTTCTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTB
T ss_pred HHHHHHHHcCCCCCCHHHHHhccc------CCCCCCCCCCCCCCCCeeECCccHHhHHHHHHHHHHHhhhhccccccccc
Confidence 233445676 33344555432 4666789987643 6788889999999999999999998765
Q ss_pred --CCCeEEEEeCCCccccccHHHHHHHHHHcCC-CEEEEEEcCCcccccccccccCCccHHHHHhhcCeEEE-EEeCC-C
Q 017890 258 --KDACAVAYTGDGGTSEGDFHAALNFAAVMEA-PVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSI-RVDGN-D 332 (364)
Q Consensus 258 --~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~L-PvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~~~-~VDGn-D 332 (364)
++++|||++|||+++||.+||++++|+.++| |+|+||+||+|+|++++.... ..++.+++++|||+++ +|||| |
T Consensus 156 ~~~~~~v~~i~GDG~~~eG~~~Eal~~A~~~~L~~li~i~~nN~~~i~~~~~~~~-~~d~~~~~~a~G~~~~~~vdG~~d 234 (675)
T 1itz_A 156 EIVDHYTYVILGDGCQMEGIANEACSLAGHWGLGKLIAFYDDNHISIDGDTEIAF-TEDVSTRFEALGWHTIWVKNGNTG 234 (675)
T ss_dssp CCCCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSEETTEEGGGTC-CSCHHHHHHHTTCEEEEESCTTTC
T ss_pred CCCCCEEEEEECHhHhchhHHHHHHHHHHHhCCCcEEEEEECCCccCCCChhhhc-ChhHHHHHHhCCCEEEEEecCCCC
Confidence 6889999999999999999999999999999 799999999999999887765 7889999999999999 99999 9
Q ss_pred HHHHHHHHHHHHHHhhcCCCcEEEEEEeecc
Q 017890 333 ALAVYTAVQAAREMAISEKRPVLVEVRLNFL 363 (364)
Q Consensus 333 ~~av~~a~~~A~~~ar~~~~P~LIea~T~R~ 363 (364)
++++++|+++|++ ..++|+||+++|++-
T Consensus 235 ~~~l~~al~~a~~---~~~~P~lI~~~T~kg 262 (675)
T 1itz_A 235 YDDIRAAIKEAKA---VTDKPTLIKVTTTIG 262 (675)
T ss_dssp HHHHHHHHHHHHH---CCSSCEEEEEECCTT
T ss_pred HHHHHHHHHHHHH---CCCCeEEEEEeeecc
Confidence 9999999998875 257999999999974
No 16
>3kom_A Transketolase; rossmann fold, csgid, transferase, structural genomics, center for structural genomics of infectious DISE; HET: MSE; 1.60A {Francisella tularensis subsp}
Probab=99.94 E-value=2.2e-26 Score=243.71 Aligned_cols=174 Identities=24% Similarity=0.294 Sum_probs=137.7
Q ss_pred CCcEEEcc--CCc---hhHHHhcCC-CHHHHHHHHhcCCCCCCCCCCCccccCCC-cccccccCCCcccchhHHHHHHHH
Q 017890 180 ADDFILPQ--YRE---PGVLLWRGY-TLQQFANQVFANKADDGKGRQMPIHYGSK-KLNYITISSPIATQLPQAVGVAYS 252 (364)
Q Consensus 180 ~~D~v~~~--yR~---~g~ll~rG~-~~~~~l~~~~g~~~~~~~Gr~mp~H~~~~-~~~~~~~sg~LG~~lp~AvG~A~A 252 (364)
+.|.++.+ |-. .+++...|+ ...+.|.+++. .|+..|.|+... .+++...+|+||+++|+|+|+|+|
T Consensus 58 ~rDrfvls~GH~s~~lYa~l~l~G~~~~~~~l~~~r~------~~s~~~ghp~~~~~~gve~~tG~lG~gl~~AvG~AlA 131 (663)
T 3kom_A 58 NRDRFVLSNGHGSMLLYSLLHLTGYDLSIEDIKNFRQ------LHSKTPGHPEYGYTPGVETTTGPLGQGVANAVGMALG 131 (663)
T ss_dssp TSCEEEECSSSCHHHHHHHHHHHTCSCCHHHHTTTTS------TTCSCCSSCCTTTSTTCCSCCCSTTHHHHHHHHHHHH
T ss_pred CCCeEEEeCCcccHHHHHHHHHhCCCCCHHHHHhhcc------CCCCCCCCCCCCCCCCcccCCcchhhHHHHHHHHHHh
Confidence 35866654 433 223444675 33344555542 467778898764 367888899999999999999999
Q ss_pred hhhccC----------CCeEEEEeCCCccccccHHHHHHHHHHcCCC-EEEEEEcCCcccccccccccCCccHHHHHhhc
Q 017890 253 LKMEKK----------DACAVAYTGDGGTSEGDFHAALNFAAVMEAP-VVFICRNNGWAISTNISEQFRSDGIVVKGRAY 321 (364)
Q Consensus 253 ~k~~~~----------~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LP-vIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~ 321 (364)
.|+.+. +++|+|++|||+++||.+|||+++|++++|| +|+|++||+|+|++++.... .+++.+++++|
T Consensus 132 ~~~~~~~~~~~~~~~~d~~v~~i~GDG~l~eG~~~Eal~~A~~~~L~~livi~dnN~~~i~~~~~~~~-~~d~~~~~~a~ 210 (663)
T 3kom_A 132 EKLLSDRYNTPDLKVIDHHTYVFLGDGCLMEGVSHEACSLAGTLGLNKLVAFWDDNNISIDGDTKGWF-SDNTPERFRAY 210 (663)
T ss_dssp HHHHHHHHCBTTBCSCCCCEEEEECHHHHHSHHHHHHHHHHHHHTCTTEEEEEEECC-----CGGGTC-CCCHHHHHHHT
T ss_pred HHhhcccccccccccCCCeEEEEECchhhhhchHHHHHHHHHHhCCCeEEEEEECCCcccccchhhhc-chhHHHHHHHC
Confidence 987653 7899999999999999999999999999996 89999999999999887654 57899999999
Q ss_pred CeEEE-EEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeecc
Q 017890 322 GIRSI-RVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNFL 363 (364)
Q Consensus 322 G~~~~-~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R~ 363 (364)
||+++ +|||||++++++|+++|++. .++|+||+++|++-
T Consensus 211 G~~~~~~vdG~d~~~l~~al~~A~~~---~~~P~lI~~~T~kg 250 (663)
T 3kom_A 211 GWHVIENVDGHDFVAIEKAINEAHSQ---QQKPTLICCKTVIG 250 (663)
T ss_dssp TCEEEEEEETTCHHHHHHHHHHHHHC---SSSCEEEEEECCTT
T ss_pred CCeEEEEEcCCCHHHHHHHHHHHHhc---CCCCEEEEEecccc
Confidence 99999 99999999999999887651 57999999999874
No 17
>2e6k_A Transketolase; structural genomics, NPPSFA, national project protein structural and functional analyses; 2.09A {Thermus thermophilus}
Probab=99.94 E-value=2.5e-26 Score=242.85 Aligned_cols=172 Identities=22% Similarity=0.280 Sum_probs=142.2
Q ss_pred cEEEcc--CCc---hhHHHhcCC-CHHHHHHHHhcCCCCCCCCCCCccccCCCc-ccccccCCCcccchhHHHHHHHHhh
Q 017890 182 DFILPQ--YRE---PGVLLWRGY-TLQQFANQVFANKADDGKGRQMPIHYGSKK-LNYITISSPIATQLPQAVGVAYSLK 254 (364)
Q Consensus 182 D~v~~~--yR~---~g~ll~rG~-~~~~~l~~~~g~~~~~~~Gr~mp~H~~~~~-~~~~~~sg~LG~~lp~AvG~A~A~k 254 (364)
|.++.+ |-. .++++..|+ ...+-|..++. .|+..++|+...+ +++...+|+||+++|+|+|+|+|.|
T Consensus 62 Dr~vls~GH~~~~lYa~l~l~G~~~~~~~l~~~r~------~~~~~~ghp~~~~~~g~~~~~G~lG~gl~~AvG~A~A~~ 135 (651)
T 2e6k_A 62 DRFVLSAGHGSMLLYAVLHLTGYDLPLEELKSFRQ------WGSKTPGHPERGHTPGVEVTTGPLGQGISTAVGLALAER 135 (651)
T ss_dssp CEEEESSGGGHHHHHHHHHHTTCSCCHHHHTTTTS------TTCSCCSSCCBTTBTTCCSCCCSTTHHHHHHHHHHHHHH
T ss_pred CeEEEeCcchhHHHHHHHHHhCCCCCHHHHHHhhc------cCCCCCCCCCCCCCCCeeeccccccchHHHHHHHHHHHH
Confidence 765543 433 234445676 33334444432 3556688887543 6788899999999999999999998
Q ss_pred hcc----------CCCeEEEEeCCCccccccHHHHHHHHHHcCCC-EEEEEEcCCcccccccccccCCccHHHHHhhcCe
Q 017890 255 MEK----------KDACAVAYTGDGGTSEGDFHAALNFAAVMEAP-VVFICRNNGWAISTNISEQFRSDGIVVKGRAYGI 323 (364)
Q Consensus 255 ~~~----------~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LP-vIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~ 323 (364)
+.+ .+++|||++|||+++||.+||++++|+.++|| +|+||+||+|+|++++...+ ..++.+++++|||
T Consensus 136 ~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~Eal~~A~~~~L~~li~i~~nN~~~i~~~~~~~~-~~d~~~~~~a~G~ 214 (651)
T 2e6k_A 136 KLAAEFNRPGHVVVDHYTYVLASDGDLMEGVSGEAASLAGHWGLSKLIVFWDDNRISIDGPTDLAF-TEDVLARYRAYGW 214 (651)
T ss_dssp HHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECCEETTEEGGGTC-CSCHHHHHHHTTC
T ss_pred hhcccccccccCCCCCEEEEEEChhhhchhHHHHHHHHHHHcCCCeEEEEEECCCccccccccccc-CccHHHHHHhCCC
Confidence 765 68899999999999999999999999999996 99999999999999988776 6789999999999
Q ss_pred EEE-EEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeeccC
Q 017890 324 RSI-RVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNFLW 364 (364)
Q Consensus 324 ~~~-~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R~~ 364 (364)
+++ +|||||++++++|+++|++ .++|+||+++|+|-+
T Consensus 215 ~~~~~vdG~d~~~l~~al~~a~~----~~~P~lI~~~t~kg~ 252 (651)
T 2e6k_A 215 QTLRVEDVNDLEALRKAIKLAKL----DERPTLIAVRSHIGF 252 (651)
T ss_dssp EEEEESCTTCHHHHHHHHHHHHH----SSSCEEEEEECCTTT
T ss_pred eEEEEeCCCCHHHHHHHHHHHHH----CCCCEEEEEEeEecc
Confidence 999 9999999999999999876 579999999999853
No 18
>1gpu_A Transketolase; transferase(ketone residues); HET: THD; 1.86A {Saccharomyces cerevisiae} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 1ngs_A* 1trk_A* 1ay0_A* 1tkb_A* 1tka_A* 1tkc_A*
Probab=99.94 E-value=4e-26 Score=242.41 Aligned_cols=174 Identities=21% Similarity=0.276 Sum_probs=143.8
Q ss_pred CcEEEcc--CCc---hhHHHhcCC-CHHHHHHHHhcCCCCCCCCCCCccccCCCcccccccCCCcccchhHHHHHHHHhh
Q 017890 181 DDFILPQ--YRE---PGVLLWRGY-TLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLK 254 (364)
Q Consensus 181 ~D~v~~~--yR~---~g~ll~rG~-~~~~~l~~~~g~~~~~~~Gr~mp~H~~~~~~~~~~~sg~LG~~lp~AvG~A~A~k 254 (364)
.|.++.+ |-. .++++..|+ ...+-|..++. .|+.+++|+....+++...+|+||+++|+|+|+|+|.+
T Consensus 60 rDr~v~s~GH~~~~lYa~~~l~G~~~~~~~l~~~r~------~g~~~~ghp~~~~~g~~~~~G~lG~gl~~AvG~AlA~~ 133 (680)
T 1gpu_A 60 RDRFVLSNGHAVALLYSMLHLTGYDLSIEDLKQFRQ------LGSRTPGHPEFELPGVEVTTGPLGQGISNAVGMAMAQA 133 (680)
T ss_dssp CCEEEESSGGGHHHHHHHHHHTTCSCCHHHHTTTTC------TTCSCCSSCCTTSTTCCSCCCSTTHHHHHHHHHHHHHH
T ss_pred CCEEEEecchHHHHHHHHHHHhCCCCCHHHHHhhcc------cCCCCCCCCCccCCCeeeccccccchHHHHHHHHHHHH
Confidence 5766554 333 234455676 33334444432 46677899987557888999999999999999999998
Q ss_pred hcc----------CCCeEEEEeCCCccccccHHHHHHHHHHcCCC-EEEEEEcCCcccccccccccCCccHHHHHhhcCe
Q 017890 255 MEK----------KDACAVAYTGDGGTSEGDFHAALNFAAVMEAP-VVFICRNNGWAISTNISEQFRSDGIVVKGRAYGI 323 (364)
Q Consensus 255 ~~~----------~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LP-vIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~ 323 (364)
+.+ .+++|||++|||+++||.+||++++|+.++|| +|+||+||+|+|++++..+. .+++.+++++|||
T Consensus 134 ~~~~~~n~~~~~~~~~~vv~i~GDG~~~eG~~~Eal~~A~~~~L~~li~i~~nN~~~i~~~~~~~~-~~d~~~~~~a~G~ 212 (680)
T 1gpu_A 134 NLAATYNKPGFTLSDNYTYVFLGDGCLQEGISSEASSLAGHLKLGNLIAIYDDNKITIDGATSISF-DEDVAKRYEAYGW 212 (680)
T ss_dssp HHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSEETTEEGGGTC-CCCHHHHHHHHTC
T ss_pred HhccccccCccCCCCCeEEEEECCCccchhhHHHHHHHHHHhCCCcEEEEEECCCceEeccccccc-CccHHHHHHhcCC
Confidence 764 37899999999999999999999999999996 99999999999999887665 5789999999999
Q ss_pred EEE-EEeCC-CHHHHHHHHHHHHHHhhcCCCcEEEEEEeeccC
Q 017890 324 RSI-RVDGN-DALAVYTAVQAAREMAISEKRPVLVEVRLNFLW 364 (364)
Q Consensus 324 ~~~-~VDGn-D~~av~~a~~~A~~~ar~~~~P~LIea~T~R~~ 364 (364)
+++ +|||| |++++++|+++|++ ..++|+|||++|+|-+
T Consensus 213 ~~~~~vdG~~d~~~l~~al~~A~~---~~~~P~lI~~~T~kg~ 252 (680)
T 1gpu_A 213 EVLYVENGNEDLAGIAKAIAQAKL---SKDKPTLIKMTTTIGY 252 (680)
T ss_dssp EEEEESCTTTCHHHHHHHHHHHHH---CTTSCEEEEEECCTTT
T ss_pred eEEEEecCCCCHHHHHHHHHHHHH---CCCCCEEEEEEeeccc
Confidence 999 99999 99999999999876 3579999999999853
No 19
>3uk1_A Transketolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, thiamine pyrophosphate; 2.15A {Burkholderia thailandensis} PDB: 3upt_A*
Probab=99.94 E-value=4.7e-26 Score=242.70 Aligned_cols=171 Identities=23% Similarity=0.307 Sum_probs=140.1
Q ss_pred CcEEEccCCchhH------HHhcCC-CHHHHHHHHhcCCCCCCCCCCCccccCCCc-ccccccCCCcccchhHHHHHHHH
Q 017890 181 DDFILPQYREPGV------LLWRGY-TLQQFANQVFANKADDGKGRQMPIHYGSKK-LNYITISSPIATQLPQAVGVAYS 252 (364)
Q Consensus 181 ~D~v~~~yR~~g~------ll~rG~-~~~~~l~~~~g~~~~~~~Gr~mp~H~~~~~-~~~~~~sg~LG~~lp~AvG~A~A 252 (364)
.|.++.+ -+|+. +...|+ ...+-|..++. .|+.++.|+.... +++...+|+||+++|.|+|+|+|
T Consensus 98 rDrfvls-~GH~s~~lYa~l~l~G~~~~~~~l~~~r~------~~s~~~ghp~~~~~~gve~~tG~lG~gl~~AvG~AlA 170 (711)
T 3uk1_A 98 RDRFVLS-NGHGSMLLYSLLHLTGYDLPIEELKNFRQ------LHSKTPGHPEYGITPGVETTTGPLGQGLANAVGMALG 170 (711)
T ss_dssp CCEEEEC-SGGGHHHHHHHHHHHTCSCCHHHHHTTTS------TTCSCCSSCCTTTSTTCCSCCCSTTHHHHHHHHHHHH
T ss_pred CCeEEEe-CCcccHHHHHHHHHhCCCCCHHHHHhhcc------ccCCCCCCCCCCCCCCcccCccchhhHHHHHHHHHHH
Confidence 5866654 24443 445676 34444556542 4667788987543 67888899999999999999999
Q ss_pred hhhccC----------CCeEEEEeCCCccccccHHHHHHHHHHcCCC-EEEEEEcCCcccccccccccCCccHHHHHhhc
Q 017890 253 LKMEKK----------DACAVAYTGDGGTSEGDFHAALNFAAVMEAP-VVFICRNNGWAISTNISEQFRSDGIVVKGRAY 321 (364)
Q Consensus 253 ~k~~~~----------~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LP-vIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~ 321 (364)
.|+.+. +++|||++|||+++||.+||+|++|+.++|| +|+||+||+|+|++++..+. .+++.+++++|
T Consensus 171 ~~~~~~~~n~~~~~~~d~~vv~i~GDG~l~eG~~~Eal~~A~~~~L~~livI~dnN~~~i~~~~~~~~-~~d~~~~~~a~ 249 (711)
T 3uk1_A 171 EALLAAEFNRDDAKIVDHHTYVFLGDGCLMEGISHEACSLAGTLKLNKLIALYDDNGISIDGDVVNWF-HDDTPKRFEAY 249 (711)
T ss_dssp HHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSEETTEEGGGTC-CCCHHHHHHHT
T ss_pred HHhhcccccccccccCCCeEEEEECCcchhhccHHHHHHHHHHhCCCcEEEEEECCCcccccchhhhc-CCCHHHHHHHc
Confidence 987653 7899999999999999999999999999997 99999999999999887764 57899999999
Q ss_pred CeEEEE-EeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeecc
Q 017890 322 GIRSIR-VDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNFL 363 (364)
Q Consensus 322 G~~~~~-VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R~ 363 (364)
||++++ |||||++++++|+++|++ .++|+||+++|+|-
T Consensus 250 G~~~~~~vdG~d~~~l~~Al~~A~~----~~~P~lI~v~T~kG 288 (711)
T 3uk1_A 250 GWNVIPNVNGHDVDAIDAAIAKAKR----SDKPSLICCKTRIG 288 (711)
T ss_dssp TCEEEEEEETTCHHHHHHHHHHHTT----CSSCEEEEEEC---
T ss_pred CCcEEEEeCCCCHHHHHHHHHHHHh----CCCCEEEEEccccc
Confidence 999999 899999999999988754 68999999999874
No 20
>2r8o_A Transketolase 1, TK 1; reaction intermediate, calcium, metal-binding, thiamine pyrophosphate, transferase; HET: T5X; 1.47A {Escherichia coli K12} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2r5n_A* 2r8p_A* 1qgd_A*
Probab=99.93 E-value=1.3e-25 Score=238.05 Aligned_cols=174 Identities=24% Similarity=0.317 Sum_probs=141.3
Q ss_pred CcEEEcc--CCc---hhHHHhcCC-CHHHHHHHHhcCCCCCCCCCCCccccCCCc-ccccccCCCcccchhHHHHHHHHh
Q 017890 181 DDFILPQ--YRE---PGVLLWRGY-TLQQFANQVFANKADDGKGRQMPIHYGSKK-LNYITISSPIATQLPQAVGVAYSL 253 (364)
Q Consensus 181 ~D~v~~~--yR~---~g~ll~rG~-~~~~~l~~~~g~~~~~~~Gr~mp~H~~~~~-~~~~~~sg~LG~~lp~AvG~A~A~ 253 (364)
.|.++.+ |-. .+++...|+ ...+-|..++. .|+..+.|+...+ +++...+|+||+++|.|+|+|+|.
T Consensus 57 rDr~v~s~GH~~~~lYa~~~l~G~~~~~~~l~~~r~------~~~~~~ghp~~~~~~g~~~~~G~lG~gl~~AvG~AlA~ 130 (669)
T 2r8o_A 57 RDRFVLSNGHGSMLIYSLLHLTGYDLPMEELKNFRQ------LHSKTPGHPEVGYTAGVETTTGPLGQGIANAVGMAIAE 130 (669)
T ss_dssp CCEEEESSGGGHHHHHHHHHHHTCSCCHHHHTTTTS------TTCSCCSSCCTTTSTTCCSCCCSTTHHHHHHHHHHHHH
T ss_pred CCeEEEeCccHHHHHHHHHHHcCCCCCHHHHHHhhc------CCCCCCCCCCccCCCCcccccccccchHHHHHHHHHHH
Confidence 4655443 333 233444565 33344444432 3666688987543 688889999999999999999999
Q ss_pred hhcc----------CCCeEEEEeCCCccccccHHHHHHHHHHcCCC-EEEEEEcCCcccccccccccCCccHHHHHhhcC
Q 017890 254 KMEK----------KDACAVAYTGDGGTSEGDFHAALNFAAVMEAP-VVFICRNNGWAISTNISEQFRSDGIVVKGRAYG 322 (364)
Q Consensus 254 k~~~----------~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LP-vIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G 322 (364)
++.+ .+++|||++|||+++||.+||++++|+.++|| +|+||+||+|+|++++..+. .+++.+++++||
T Consensus 131 ~~~~~~~n~~~~~~~~~~v~~~~GDG~~~eG~~~Eal~~A~~~~L~~li~i~~nN~~~i~~~~~~~~-~~d~~~~~~a~G 209 (669)
T 2r8o_A 131 KTLAAQFNRPGHDIVDHYTYAFMGDGCMMEGISHEVCSLAGTLKLGKLIAFYDDNGISIDGHVEGWF-TDDTAMRFEAYG 209 (669)
T ss_dssp HHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSEETTEEGGGTC-CCCHHHHHHHTT
T ss_pred HHhccccccCccCCcCCeEEEEECHhHhcchHHHHHHHHHHHcCCCcEEEEEECCCcEecccccccc-CccHHHHHHHCC
Confidence 8654 37899999999999999999999999999996 99999999999999887654 578999999999
Q ss_pred eEEE-EEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeeccC
Q 017890 323 IRSI-RVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNFLW 364 (364)
Q Consensus 323 ~~~~-~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R~~ 364 (364)
|+++ +|||||++++++|+++|++ ..++|+||+++|+|-+
T Consensus 210 ~~~~~~vdG~d~~~l~~al~~a~~---~~~~P~lI~~~T~kg~ 249 (669)
T 2r8o_A 210 WHVIRDIDGHDAASIKRAVEEARA---VTDKPSLLMCKTIIGF 249 (669)
T ss_dssp CEEEEEEETTCHHHHHHHHHHHHH---CCSSCEEEEEECCTTT
T ss_pred CeEEeEECCCCHHHHHHHHHHHHh---cCCCCEEEEEEeEecc
Confidence 9999 9999999999999999876 3579999999999853
No 21
>3m49_A Transketolase; alpha-beta-alpha sandwich, csgid, transferase, structural genomics, center for structural genomics of infectious diseases; HET: MSE TDP PG5 TRS BTB; 2.00A {Bacillus anthracis} PDB: 3hyl_A*
Probab=99.93 E-value=1.6e-25 Score=237.90 Aligned_cols=173 Identities=28% Similarity=0.390 Sum_probs=141.9
Q ss_pred CCcEEEcc--CCc---hhHHHhcCC--CHHHHHHHHhcCCCCCCCCCCCccccCCC-cccccccCCCcccchhHHHHHHH
Q 017890 180 ADDFILPQ--YRE---PGVLLWRGY--TLQQFANQVFANKADDGKGRQMPIHYGSK-KLNYITISSPIATQLPQAVGVAY 251 (364)
Q Consensus 180 ~~D~v~~~--yR~---~g~ll~rG~--~~~~~l~~~~g~~~~~~~Gr~mp~H~~~~-~~~~~~~sg~LG~~lp~AvG~A~ 251 (364)
+.|.++.+ |-. .+++...|+ +.++ |..++. .|+..|+|+... .+++...+|+||+++|.|+|+|+
T Consensus 82 ~rDrfvls~GH~~~~lYa~l~l~G~~~~~~~-l~~~rq------~gs~~~Ghp~~~~~pgv~~~tG~lG~gl~~AvG~Al 154 (690)
T 3m49_A 82 NRDRFVLSAGHGSMLLYSLLHLSGYDVTMDD-LKNFRQ------WGSKTPGHPEYGHTAGVDATTGPLGQGIATAVGMAM 154 (690)
T ss_dssp TSCEEEESSGGGHHHHHHHHHHTTSSCCHHH-HTTTTC------TTCSSCSSCCTTTSTTCCSCCCSTTHHHHHHHHHHH
T ss_pred CCCeEEECCccHHHHHHHHHHHHCCCCCHHH-HHhhcc------CCCCCCCCCCCCCCCccccCCccccccHHHHHHHHH
Confidence 46866654 333 134445675 4544 555442 477788998764 46788889999999999999999
Q ss_pred HhhhccC----------CCeEEEEeCCCccccccHHHHHHHHHHcCCC-EEEEEEcCCcccccccccccCCccHHHHHhh
Q 017890 252 SLKMEKK----------DACAVAYTGDGGTSEGDFHAALNFAAVMEAP-VVFICRNNGWAISTNISEQFRSDGIVVKGRA 320 (364)
Q Consensus 252 A~k~~~~----------~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LP-vIfVV~NNg~ais~~~~~~~~~~~ia~~a~a 320 (364)
|.|+.+. +++|+|++|||+++||.+||++++|++++|| +|+|++||+|+|++++.... .+++.+++++
T Consensus 155 A~~~~~~~~n~~~~~~~d~~v~~i~GDG~l~eG~~~Eal~~A~~~~L~~livI~dnN~~~i~~~~~~~~-~~d~~~~~~a 233 (690)
T 3m49_A 155 AERHLAAKYNRDAYNIVDHYTYAICGDGDLMEGVSAEASSLAAHLQLGRLVVLYDSNDISLDGDLNRSF-SESVEDRYKA 233 (690)
T ss_dssp HHHHHHHHHCBTTBCCSCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSBCSSSBGGGTC-CCCHHHHHHH
T ss_pred HHHHhhccccccccccCCCeEEEEECchhhhhccHHHHHHHHHHhCCCeEEEEEECCCeecccchhhcc-chhHHHHHHH
Confidence 9987643 7899999999999999999999999999995 89999999999999886554 5789999999
Q ss_pred cCeEEEEE-eCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeecc
Q 017890 321 YGIRSIRV-DGNDALAVYTAVQAAREMAISEKRPVLVEVRLNFL 363 (364)
Q Consensus 321 ~G~~~~~V-DGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R~ 363 (364)
|||++++| ||||++++.+|+++|++ ..++|+||+++|++-
T Consensus 234 ~G~~~~~v~DG~d~~~l~~Al~~a~~---~~~~P~lI~v~T~kG 274 (690)
T 3m49_A 234 YGWQVIRVEDGNDIEAIAKAIEEAKA---DEKRPTLIEVRTTIG 274 (690)
T ss_dssp HTCEEEEESCTTCHHHHHHHHHHHHH---CCSSCEEEEEECCTT
T ss_pred cCCcEEEEecCCCHHHHHHHHHHHHh---cCCCCEEEEEEeecc
Confidence 99999999 99999999999887764 257999999999874
No 22
>2qtc_A Pyruvate dehydrogenase E1 component; thiamin diphosphate, glycolysis, MAG metal-binding, oxidoreductase, thiamine pyrophosphate; HET: TDK; 1.77A {Escherichia coli} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2qta_A* 1l8a_A* 1rp7_A* 2g25_A* 2g28_A* 2g67_A 2iea_A* 3lpl_A* 3lq2_A* 3lq4_A*
Probab=99.92 E-value=2e-24 Score=234.69 Aligned_cols=224 Identities=15% Similarity=0.139 Sum_probs=167.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-----cCcccccccCCchhHHHHHHHhhcC------CCcEEEcc-CCc---hhHHH
Q 017890 131 VAVKMYSHMVTLQVMDSVLYEAQR-----QGRFSFYLTTIGEEAINIGSAAALS------ADDFILPQ-YRE---PGVLL 195 (364)
Q Consensus 131 ~l~~ly~~M~~~R~~D~~~~~~~r-----qGri~f~~~~~GqEa~~vg~a~aL~------~~D~v~~~-yR~---~g~ll 195 (364)
++.+-+..-++...++.... ..+ .|.++-+++. -|...++....++ ++|+|+.. |-. .++++
T Consensus 76 ~l~~~la~~iR~~~i~~v~~-a~~~~~~~gGH~gs~ls~--ael~~~l~~~~~~~~~~~~~~D~V~~~GH~sp~~Ya~~~ 152 (886)
T 2qtc_A 76 ELERRIRSAIRWNAIMTVLR-ASKKDLELGGHMASFQSS--ATIYDVCFNHFFRARNEQDGGDLVYFQGHISPGVYARAF 152 (886)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-HHHTCSCCCCCSHHHHHH--HHHHHHHHHHTCCCCCSSSCCCEEECCGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-hcCCCCCCccCcCCcHHH--HHHHHHHHHHhcCCCCCCCCCCEEEEcchhHHHHHHHHH
Confidence 44434455445555554322 222 4666554444 2555555555577 57877775 333 23466
Q ss_pred hcCCCHHHHHHHHhcCCCCCCCCCCCccccCCCc-cc-ccccCCCcccchhHHHHHHHHhhh-------ccCCCeEEEEe
Q 017890 196 WRGYTLQQFANQVFANKADDGKGRQMPIHYGSKK-LN-YITISSPIATQLPQAVGVAYSLKM-------EKKDACAVAYT 266 (364)
Q Consensus 196 ~rG~~~~~~l~~~~g~~~~~~~Gr~mp~H~~~~~-~~-~~~~sg~LG~~lp~AvG~A~A~k~-------~~~~~~vv~~~ 266 (364)
..|+..++-|..|+. . ..+.+++.|+...+ ++ +...+|++|+++++|+|+|+|.|+ ++.+++|+|++
T Consensus 153 l~Gr~~~e~l~~fRq-~---~~~~gl~~~p~~~~~p~~~~~~tG~~G~g~s~AiG~A~a~~~l~~~~~~~~~~~~v~avi 228 (886)
T 2qtc_A 153 LEGRLTQEQLDNFRQ-E---VHGNGLSSYPHPKLMPEFWQFPTVSMGLGPIGAIYQAKFLKYLEHRGLKDTSKQTVYAFL 228 (886)
T ss_dssp HTTSSCHHHHTTBTC-C---TTSSCBCSSCCTTTSTTTCCCCCCSTTHHHHHHHHHHHHHHHHHHTTSCCCTTCCEEEEE
T ss_pred HhCCCCHHHHHhccC-C---CCCCCCCCCCCcccCCCcccccccccCccHHHHHHHHHHhhhhcccccccCCCCEEEEEE
Confidence 688755555666542 1 11456777776543 44 778899999999999999999998 77889999999
Q ss_pred CCCccccccHHHHHHHHHHcCC-CEEEEEEcCCccccccccccc-CCccHHHHHhhcCeEEEEE----------------
Q 017890 267 GDGGTSEGDFHAALNFAAVMEA-PVVFICRNNGWAISTNISEQF-RSDGIVVKGRAYGIRSIRV---------------- 328 (364)
Q Consensus 267 GDGa~~eG~~~EALn~Aa~~~L-PvIfVV~NNg~ais~~~~~~~-~~~~ia~~a~a~G~~~~~V---------------- 328 (364)
|||+++||.+|||+|+|+.++| ++||||+||+++|++++.... ...++.++++++||++++|
T Consensus 229 GDG~l~eG~~~EAl~~A~~~~L~nli~Vvn~N~~si~~~v~~~~~~~~~l~~~~~~~G~~~~~v~~g~~~~~ll~~~~~~ 308 (886)
T 2qtc_A 229 GDGEMDEPESKGAITIATREKLDNLVFVINCNLQRLDGPVTGNGKIINELEGIFEGAGWNVIKVMWGSRWDELLRKDTSG 308 (886)
T ss_dssp ETGGGGSHHHHTTHHHHHHTTCTTEEEEEEECSBCSSSBSCTTSCHHHHHHHHHHHTTCEEEEECBCTTHHHHHHHCSSC
T ss_pred CCccccccchHHHHHHHHHcCCCcEEEEEECCCcccCCCccccccccHHHHHHHHhCCCCEEEEecchhHHHHHccCCch
Confidence 9999999999999999999999 699999999999999987642 3567899999999999998
Q ss_pred -----------------------------------------------------eCCCHHHHHHHHHHHHHHhhcCCCcEE
Q 017890 329 -----------------------------------------------------DGNDALAVYTAVQAAREMAISEKRPVL 355 (364)
Q Consensus 329 -----------------------------------------------------DGnD~~av~~a~~~A~~~ar~~~~P~L 355 (364)
||||+.+|++|+++|+++ .++|+|
T Consensus 309 ~l~~~~~~~~d~~~q~~~~~~g~~~r~~~F~~~~~~~~l~~~~~d~~i~~l~~dGhD~~~l~~a~~~A~~~---~~~Ptl 385 (886)
T 2qtc_A 309 KLIQLMNETVDGDYQTFKSKDGAYVREHFFGKYPETAALVADWTDEQIWALNRGGHDPKKIYAAFKKAQET---KGKATV 385 (886)
T ss_dssp HHHHHHHHCCHHHHHHHTTSCHHHHHHHTSTTSHHHHTTTTTCCHHHHHTCCBGGGCHHHHHHHHHHHHHC---CSSCEE
T ss_pred HHHHHHHhccchhhhhhhhccchHHHHhhcccchHHHHHHhhcChhhHhhcccCCCCHHHHHHHHHHHHHc---CCCCEE
Confidence 799999999999999873 468999
Q ss_pred EEEEeeccC
Q 017890 356 VEVRLNFLW 364 (364)
Q Consensus 356 Iea~T~R~~ 364 (364)
|+++|++-|
T Consensus 386 I~~~T~KG~ 394 (886)
T 2qtc_A 386 ILAHTIKGY 394 (886)
T ss_dssp EEEECCTTT
T ss_pred EEEeeeecc
Confidence 999998743
No 23
>3ahc_A Phosphoketolase, xylulose 5-phosphate/fructose 6-phosphate phospho; thiamine diphosphate-dependent enzyme, alpha-beta fold; HET: TPP 2PE; 1.70A {Bifidobacterium breve} PDB: 3ahd_A* 3ahe_A* 3ahf_A* 3ahj_A* 3ahi_A* 3ahh_A* 3ahg_A* 3ai7_A*
Probab=99.76 E-value=3e-18 Score=184.45 Aligned_cols=138 Identities=18% Similarity=0.215 Sum_probs=121.1
Q ss_pred CccccCCCcccccccCCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCcccccc---HHHHHHHHHHcCC-CEEEEEEc
Q 017890 221 MPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGD---FHAALNFAAVMEA-PVVFICRN 296 (364)
Q Consensus 221 mp~H~~~~~~~~~~~sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~---~~EALn~Aa~~~L-PvIfVV~N 296 (364)
+|+|+....+++...+|+||+++++|+|+|+ ++++..|+|++|||+.++|. .||+.+++..+++ +||.|+++
T Consensus 159 ~pgHp~~~tpGve~~tG~LGqGls~AvG~A~----~~~~~~v~~~~GDGe~e~GsLAg~wea~~~~~~~~l~nl~~i~D~ 234 (845)
T 3ahc_A 159 IPSHFAPETPGSIHEGGELGYALSHAYGAVM----NNPSLFVPCIIGDGEAETGPLATGWQSNKLVNPRTDGIVLPILHL 234 (845)
T ss_dssp BCSSCCTTSTTCSCCCSSTTCHHHHHHHHHT----TCTTCEEEEEEETTGGGSHHHHHHGGGGGSCCTTTSCEEEEEEEE
T ss_pred CCCCCCCCCCCeecCCCCccchHhHHhhhhh----cCCCCeEEEEECCCchhhhcchhhhHHhhhhhhhcCCCEEEEEEC
Confidence 9999975557899999999999999999994 46788999999999999999 9999999999999 89999999
Q ss_pred CCcccccccccc-cCCccHHHHHhhcCeEEE-EEeC-C--CHHHHHHHHHHHHH-----------Hhhc--CCCc--EEE
Q 017890 297 NGWAISTNISEQ-FRSDGIVVKGRAYGIRSI-RVDG-N--DALAVYTAVQAARE-----------MAIS--EKRP--VLV 356 (364)
Q Consensus 297 Ng~ais~~~~~~-~~~~~ia~~a~a~G~~~~-~VDG-n--D~~av~~a~~~A~~-----------~ar~--~~~P--~LI 356 (364)
|+++|+.++... ...+++.+++++|||+++ .||| | |++++.+++.+|++ .+++ .++| ++|
T Consensus 235 N~~~i~g~t~l~~~~~e~l~~rf~a~Gw~v~~~vdG~~~~D~~~i~~a~~~al~~~~~~i~~i~~~A~~~~~~kP~w~~I 314 (845)
T 3ahc_A 235 NGYKIANPTILARISDEELHDFFRGMGYHPYEFVAGFDNEDHMSIHRRFAELFETIFDEICDIKAAAQTDDMTRPFYPML 314 (845)
T ss_dssp CSBSSSSBCHHHHSCHHHHHHHHHHTTEEEEEEECSSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCCEEEE
T ss_pred CCCcCCCCccccccCcHHHHHHHHHCCCEEeEEeCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCeEE
Confidence 999999998643 457889999999999999 9999 9 99999998876663 2444 3689 999
Q ss_pred EEEeec
Q 017890 357 EVRLNF 362 (364)
Q Consensus 357 ea~T~R 362 (364)
.++|..
T Consensus 315 i~rT~k 320 (845)
T 3ahc_A 315 IFRTPK 320 (845)
T ss_dssp EEECCT
T ss_pred EEECcc
Confidence 999964
No 24
>4feg_A Pyruvate oxidase; carbanion, structure activity relationship, oxidation-reduct umpolung, thiamine diphosphate, reaction intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A*
Probab=99.68 E-value=3.6e-17 Score=170.98 Aligned_cols=119 Identities=17% Similarity=0.274 Sum_probs=95.3
Q ss_pred cCCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcC-Cccccc----------
Q 017890 235 ISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNN-GWAIST---------- 303 (364)
Q Consensus 235 ~sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NN-g~ais~---------- 303 (364)
..++||+++|.|+|++++. ++++|||++|||+++++ +++|++|+.+++|+++||.|| +|++..
T Consensus 418 ~~g~~G~~l~~A~Gaala~----~~~~vv~~~GDG~~~~~--~~~l~~a~~~~lp~~~vv~nN~~~~~~~~~~~~~~~~~ 491 (603)
T 4feg_A 418 LFATMGVGIPGAIAAKLNY----PERQVFNLAGDGGASMT--MQDLATQVQYHLPVINVVFTNCQYGFIKDEQEDTNQND 491 (603)
T ss_dssp SSCCTTCHHHHHHHHHHHC----TTSCEEEEEEHHHHHHH--GGGHHHHHHTTCCCEEEEEECSBCHHHHHHHHHHCSSC
T ss_pred ccccccchhHHHhhHHHhC----CCCcEEEEeccHHHhhh--HHHHHHHHHHCcCeEEEEEECCchHHHHHHHHHhcCCC
Confidence 3589999999999999884 57899999999999986 556999999999988777777 588632
Q ss_pred ccccccCCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeecc
Q 017890 304 NISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNFL 363 (364)
Q Consensus 304 ~~~~~~~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R~ 363 (364)
.........++++++++||+++++|| +++++.+++++|++ .+.++|+|||++|.|-
T Consensus 492 ~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~~l~~al~~a~~--~~~~gP~lIev~~~~~ 547 (603)
T 4feg_A 492 FIGVEFNDIDFSKIADGVHMQAFRVN--KIEQLPDVFEQAKA--IAQHEPVLIDAVITGD 547 (603)
T ss_dssp CCSSBCCCCCHHHHHHHTTCEEEEEC--BGGGHHHHHHHHHH--HTTTSCEEEEEECCCC
T ss_pred cccCcCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHH--hcCCCcEEEEEEeCCC
Confidence 11222345689999999999999998 46678888877762 1468999999999664
No 25
>1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A {Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2dji_A* 1v5f_A* 1v5g_A*
Probab=99.67 E-value=1.1e-16 Score=166.97 Aligned_cols=119 Identities=16% Similarity=0.213 Sum_probs=99.7
Q ss_pred cCCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcC-Ccccccccccc-----
Q 017890 235 ISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNN-GWAISTNISEQ----- 308 (364)
Q Consensus 235 ~sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NN-g~ais~~~~~~----- 308 (364)
..|+||+++|.|+|+|+|. ++++|||++|||+++++ +++|++|+++++|+++||.|| +|++.......
T Consensus 411 ~~g~mG~~l~~AiGaala~----~~~~vv~i~GDG~~~~~--~~~L~ta~~~~l~~~ivv~NN~~~~~~~~~q~~~~~~~ 484 (590)
T 1v5e_A 411 LFATMGIAIPGGLGAKNTY----PDRQVWNIIGDGAFSMT--YPDVVTNVRYNMPVINVVFSNTEYAFIKNKYEDTNKNL 484 (590)
T ss_dssp SSCCTTCHHHHHHHHHHHC----TTSCEEEEEEHHHHHHH--GGGHHHHHHTTCCCEEEEEECSSCTTGGGTTSSSCCSC
T ss_pred CCCcccChHHHHHHHHHhC----CCCeEEEEEechHHhch--HHHHHHHHHhCCCCEEEEEECCchHHHHHHHHHhcCCC
Confidence 3689999999999999985 57889999999999986 477999999999987666555 79887643221
Q ss_pred ----cCCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q 017890 309 ----FRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNF 362 (364)
Q Consensus 309 ----~~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R 362 (364)
....++.+++++||+++++|+ +.+++.+++++|++.+|+ ++|+|||++|+|
T Consensus 485 ~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~~~~~-~gp~liev~~~~ 539 (590)
T 1v5e_A 485 FGVDFTDVDYAKIAEAQGAKGFTVS--RIEDMDRVMAEAVAANKA-GHTVVIDCKITQ 539 (590)
T ss_dssp CCCCCCCCCHHHHHHHTTSEEEEEC--BHHHHHHHHHHHHHHHHT-TCCEEEEEECCS
T ss_pred ccccCCCCCHHHHHHHcCCEEEEEC--CHHHHHHHHHHHHHhcCC-CCCEEEEEEecc
Confidence 234689999999999999998 689999999999886654 789999999986
No 26
>2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate, benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A* 3iaf_A* 3d7k_A*
Probab=99.65 E-value=1.6e-16 Score=164.38 Aligned_cols=117 Identities=16% Similarity=0.275 Sum_probs=96.9
Q ss_pred CCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEE-cCCcccccccc-------c
Q 017890 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICR-NNGWAISTNIS-------E 307 (364)
Q Consensus 236 sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~-NNg~ais~~~~-------~ 307 (364)
.|+||+++|.|+|+|+|.| +++++|||++|||+++++ +++|++|.++++|+++||. ||+|++....+ .
T Consensus 418 ~g~~G~~l~~AiGaa~a~~--~~~~~vv~i~GDG~~~~~--~~~L~ta~~~~l~~~ivv~nN~~~~~~~~~~~~~~~~~~ 493 (563)
T 2uz1_A 418 LGSMGVGFGTALGAQVADL--EAGRRTILVTGDGSVGYS--IGEFDTLVRKQLPLIVIIMNNQSWGATLHFQQLAVGPNR 493 (563)
T ss_dssp TCCTTTHHHHHHHHHHHHH--HHTCEEEEEEEHHHHGGG--TTHHHHHHHHTCCCEEEEEECSBCHHHHHHHHHHTCTTC
T ss_pred CccccChHHHHHHHHHHhh--CCCCeEEEEEccHHHhCC--HHHHHHHHHhCCCeEEEEEeCCcchHHHHHHHHhcCCCc
Confidence 5899999999999999986 567899999999999986 3579999999999866655 55788765421 1
Q ss_pred c----cCCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q 017890 308 Q----FRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNF 362 (364)
Q Consensus 308 ~----~~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R 362 (364)
. ....++.+++++||+++++|+ +.+++.+++++|++ .++|+|||++|++
T Consensus 494 ~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~~l~~al~~a~~----~~gp~liev~~~~ 546 (563)
T 2uz1_A 494 VTGTRLENGSYHGVAAAFGADGYHVD--SVESFSAALAQALA----HNRPACINVAVAL 546 (563)
T ss_dssp CCSCBCCCCCHHHHHHHTTCEEEEEC--SHHHHHHHHHHHHH----SSSCEEEEEECCS
T ss_pred ccCCcCCCCCHHHHHHHcCCeEEEeC--CHHHHHHHHHHHHH----CCCCEEEEEEecc
Confidence 1 134689999999999999997 68999999988876 5799999999974
No 27
>2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP), thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE; 2.70A {Escherichia coli}
Probab=99.65 E-value=1e-16 Score=167.63 Aligned_cols=120 Identities=23% Similarity=0.241 Sum_probs=98.2
Q ss_pred cCCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcC-Ccccccccc-------
Q 017890 235 ISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNN-GWAISTNIS------- 306 (364)
Q Consensus 235 ~sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NN-g~ais~~~~------- 306 (364)
.+|++|+++|.|+|+|+|. ++++|||++|||+++++ .++|++|+++++|+++||.|| +|++.....
T Consensus 440 ~~G~~G~~l~~AiGaala~----~~~~vv~i~GDGs~~~~--~~~L~ta~~~~l~~~ivv~NN~~~~~~~~~~~~~~~~~ 513 (616)
T 2pan_A 440 QAGPLGWTIPAALGVCAAD----PKRNVVAISGDFDFQFL--IEELAVGAQFNIPYIHVLVNNAYLGLIRQSQRAFDMDY 513 (616)
T ss_dssp TTCCTTCHHHHHHHHHHHC----TTCEEEEEEEHHHHHHT--GGGHHHHHHTTCCCEEEEEECSBCHHHHHHGGGGTCCC
T ss_pred CcccccchHHHHHHHHHhC----CCCcEEEEEcchhhhCC--HHHHHHHHHhCCCeEEEEEECCcchHHHHHHHHhcCCc
Confidence 3589999999999999985 57899999999999986 457999999999986666555 688753211
Q ss_pred -------c--ccC----CccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q 017890 307 -------E--QFR----SDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNF 362 (364)
Q Consensus 307 -------~--~~~----~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R 362 (364)
. ... ..++.+++++||+++++|+ +++++.+++++|++++++.++|+|||++|.|
T Consensus 514 ~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~~~~~~~gp~lIev~~~~ 580 (616)
T 2pan_A 514 CVQLAFENINSSEVNGYGVDHVKVAEGLGCKAIRVF--KPEDIAPAFEQAKALMAQYRVPVVVEVILER 580 (616)
T ss_dssp SCBCCCCCTTCGGGTTCCCCHHHHHHHTTCEEEEEC--SGGGHHHHHHHHHHHHHHHCSCEEEEEEBCS
T ss_pred cccccccccccccCCCCCCCHHHHHHHcCCeEEEEC--CHHHHHHHHHHHHhhcccCCCcEEEEEEecc
Confidence 0 111 2589999999999999997 5789999999999877666899999999987
No 28
>2vk8_A Pyruvate decarboxylase isozyme 1; asymmetric active sites, phenylalanine catabolism, tryptophan catabolism, thiamine pyrophosphate; HET: TPP; 1.42A {Saccharomyces cerevisiae} PDB: 1qpb_A* 2vk1_A* 2w93_A* 1pyd_A* 1pvd_A* 2vk4_A* 2vjy_A* 2g1i_A*
Probab=99.64 E-value=8e-17 Score=166.52 Aligned_cols=121 Identities=15% Similarity=0.173 Sum_probs=97.9
Q ss_pred cCCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcC-Ccccccccc------c
Q 017890 235 ISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNN-GWAISTNIS------E 307 (364)
Q Consensus 235 ~sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NN-g~ais~~~~------~ 307 (364)
..|+||+++|.|+|+|+|.+.++.+++|||++|||+++++ +++|++|.++++|+++||.|| +|++..... .
T Consensus 411 ~~g~mG~~l~~A~Gaala~~~~~~~~~vv~~~GDG~~~~~--~~el~ta~~~~l~~~ivv~nN~~~~~~~~~~~~~~~~~ 488 (563)
T 2vk8_A 411 LWGSIGFTTGATLGAAFAAEEIDPKKRVILFIGDGSLQLT--VQEISTMIRWGLKPYLFVLNNDGYTIQKLIHGPKAQYN 488 (563)
T ss_dssp TTCCTTHHHHHHHHHHHHHHHHCTTCCEEEEEEHHHHHHH--GGGHHHHHHTTCCCEEEEEESSSCHHHHHHSCTTCGGG
T ss_pred chhhhhhHHHHHHHHHHhCcccCCCCCEEEEEcchHhhcc--HHHHHHHHHcCCCcEEEEEECCcchhhhhhhCCCCCcc
Confidence 3689999999999999999888888999999999999884 566999999999987666555 698754321 1
Q ss_pred ccCCccHHHHHhhcCeE---EEEEeCCCHHHHHHHHH-HHHHHhhcCCCcEEEEEEeec
Q 017890 308 QFRSDGIVVKGRAYGIR---SIRVDGNDALAVYTAVQ-AAREMAISEKRPVLVEVRLNF 362 (364)
Q Consensus 308 ~~~~~~ia~~a~a~G~~---~~~VDGnD~~av~~a~~-~A~~~ar~~~~P~LIea~T~R 362 (364)
.....++.+++++||++ +++|+ +.+++.++++ ++++ ..++|+|||++|++
T Consensus 489 ~~~~~d~~~~a~a~G~~~~~~~~v~--~~~el~~al~~~a~~---~~~~p~liev~~~~ 542 (563)
T 2vk8_A 489 EIQGWDHLSLLPTFGAKDYETHRVA--TTGEWDKLTQDKSFN---DNSKIRMIEVMLPV 542 (563)
T ss_dssp CCCCCCGGGHHHHTTCSSEEEEEEC--BHHHHHHHHTCTTTT---SCSSEEEEEEECCT
T ss_pred cCCCCCHHHHHHHhCCCCCcEEEec--CHHHHHHHHHHHHHh---CCCCcEEEEEEeCc
Confidence 12346899999999999 99998 5788888887 6553 23579999999986
No 29
>1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon, mandelate catabolism, T thiazolone diphosphate, inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A* 1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A* 2v3w_A* 1yno_A* 3f6b_X* 3f6e_X*
Probab=99.64 E-value=1.7e-16 Score=162.89 Aligned_cols=114 Identities=25% Similarity=0.355 Sum_probs=94.4
Q ss_pred CCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcC-Cccccccccc--------
Q 017890 237 SPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNN-GWAISTNISE-------- 307 (364)
Q Consensus 237 g~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NN-g~ais~~~~~-------- 307 (364)
|+||+++|.|+|+|+|. ++++|||++|||+++++ +++|++|.++++|+++||.|| +|++.....+
T Consensus 401 g~~G~~l~~A~G~a~a~----~~~~vv~~~GDG~~~~~--~~~l~~a~~~~l~~~ivv~nN~~~~~~~~~~~~~~~~~~~ 474 (528)
T 1q6z_A 401 GGLGFALPAAIGVQLAE----PERQVIAVIGDGSANYS--ISALWTAAQYNIPTIFVIMNNGTYGALRWFAGVLEAENVP 474 (528)
T ss_dssp CCTTSHHHHHHHHHHHC----TTSCEEEEEEHHHHTTT--GGGHHHHHHHTCCCEEEEEECSBCHHHHHHHHHHTCCSCC
T ss_pred ccccchHHHHHHHHHhC----CCCcEEEEECCcHHHhh--HHHHHHHHHhCCCeEEEEEeCCcchHhHHHHHHhcCCCcc
Confidence 89999999999999985 46789999999999987 678999999999988777666 5888654211
Q ss_pred --ccCCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q 017890 308 --QFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNF 362 (364)
Q Consensus 308 --~~~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R 362 (364)
.....++.+++++||+++++|++ .+++.++++++++ .++|+|||++|.|
T Consensus 475 ~~~~~~~d~~~~a~a~G~~~~~v~~--~~~l~~al~~a~~----~~gp~liev~~~~ 525 (528)
T 1q6z_A 475 GLDVPGIDFRALAKGYGVQALKADN--LEQLKGSLQEALS----AKGPVLIEVSTVS 525 (528)
T ss_dssp SCBCCCCCHHHHHHHHTCEEEEESS--HHHHHHHHHHHHT----CSSCEEEEEEBCC
T ss_pred cCCCCCCCHHHHHHHcCCeEEEeCC--HHHHHHHHHHHHH----CCCcEEEEEEecC
Confidence 11346899999999999999984 6788887777654 6899999999986
No 30
>1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A*
Probab=99.63 E-value=2.4e-16 Score=163.42 Aligned_cols=116 Identities=20% Similarity=0.334 Sum_probs=95.6
Q ss_pred cCCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcC-Ccccccccc-------
Q 017890 235 ISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNN-GWAISTNIS------- 306 (364)
Q Consensus 235 ~sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NN-g~ais~~~~------- 306 (364)
..++||+++|.|+|+|+|. ++++|||++|||+++++ .++|++|.++++|+++||.|| +|++.....
T Consensus 418 g~g~mG~~l~~AiGaala~----~~~~vv~i~GDG~~~~~--~~~L~ta~~~~l~~~ivv~nN~~~~~~~~~~~~~~~~~ 491 (566)
T 1ozh_A 418 GQQTMGVALPWAIGAWLVN----PERKVVSVSGDGGFLQS--SMELETAVRLKANVLHLIWVDNGYNMVAIQEEKKYQRL 491 (566)
T ss_dssp TTCCTTCHHHHHHHHHHHS----TTSEEEEEEEHHHHHHH--TTHHHHHHHHTCCEEEEEEECSBCHHHHHHHHHHHSSC
T ss_pred CcccccchHHHHHHHHHhC----CCCCEEEEEcChHHhcc--HHHHHHHHHhCCCcEEEEEECCchhHHHHHHHHhcCCC
Confidence 3589999999999999985 47899999999999984 456999999999987666555 688765321
Q ss_pred --cccCCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q 017890 307 --EQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNF 362 (364)
Q Consensus 307 --~~~~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R 362 (364)
......++.+++++||+++++|+ +.+++.+++++|++ .++|+|||++|+|
T Consensus 492 ~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~----~~gp~liev~~~~ 543 (566)
T 1ozh_A 492 SGVEFGPMDFKAYAESFGAKGFAVE--SAEALEPTLRAAMD----VDGPAVVAIPVDY 543 (566)
T ss_dssp CSCBCCCCCHHHHHHTTTSEEEECC--SGGGHHHHHHHHHH----SSSCEEEEEEBCC
T ss_pred ccCcCCCCCHHHHHHHcCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEeCC
Confidence 12334689999999999999998 57789888888875 5799999999987
No 31
>2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex, transferase; HET: MSE TPP; 2.00A {Streptomyces clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A*
Probab=99.62 E-value=3.9e-16 Score=161.96 Aligned_cols=116 Identities=23% Similarity=0.355 Sum_probs=95.0
Q ss_pred cCCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEE-cCCccccccc--------
Q 017890 235 ISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICR-NNGWAISTNI-------- 305 (364)
Q Consensus 235 ~sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~-NNg~ais~~~-------- 305 (364)
..|+||+++|.|+|+|+|. ++++|||++|||+++++ +++|++|.++++|+++||. ||+|++....
T Consensus 434 g~g~mG~~l~~AiGaa~a~----~~~~vv~i~GDG~~~~~--~~~L~~a~~~~l~~~ivv~NN~~~~~~~~~~~~~~~~~ 507 (573)
T 2iht_A 434 GCSSFGYGIPAAIGAQMAR----PDQPTFLIAGDGGFHSN--SSDLETIARLNLPIVTVVVNNDTNGLIELYQNIGHHRS 507 (573)
T ss_dssp SSCCTTCHHHHHHHHHHHS----TTSCEEEEEEHHHHHHT--GGGHHHHHHHTCCCEEEEEECSBCHHHHHHHHHHHSSC
T ss_pred CCcccccHHHHHHHHHHhC----CCCcEEEEEccHHHHhH--HHHHHHHHHhCCCeEEEEEECCcchhhHHHHHHhcCCC
Confidence 3589999999999999985 46889999999999985 4679999999999865555 5568876542
Q ss_pred -c--cccCCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q 017890 306 -S--EQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNF 362 (364)
Q Consensus 306 -~--~~~~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R 362 (364)
. ......++.+++++||+++++|+ +.+++.+++++|++ .++|+|||++|.|
T Consensus 508 ~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~~l~~al~~a~~----~~gp~liev~~~~ 561 (573)
T 2iht_A 508 HDPAVKFGGVDFVALAEANGVDATRAT--NREELLAALRKGAE----LGRPFLIEVPVNY 561 (573)
T ss_dssp CGGGTBCCCCCHHHHHHHTTCEEEECC--SHHHHHHHHHHHHT----SSSCEEEEEEBCC
T ss_pred cCccccCCCCCHHHHHHHcCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEECCC
Confidence 1 22334689999999999999997 67888888887764 6899999999986
No 32
>1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A*
Probab=99.60 E-value=7.9e-16 Score=163.29 Aligned_cols=116 Identities=19% Similarity=0.271 Sum_probs=94.6
Q ss_pred cCCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEE-cCCcccccccc-----c-
Q 017890 235 ISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICR-NNGWAISTNIS-----E- 307 (364)
Q Consensus 235 ~sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~-NNg~ais~~~~-----~- 307 (364)
..|+||+++|.|+|+|+|. ++++|||++|||+++++ + ++|++|+++++|+++||. ||+|++..... .
T Consensus 511 ~~G~mG~~lpaAiGaalA~----p~~~Vv~i~GDGsf~~~-~-~eL~ta~~~~l~v~ivV~NN~~~g~~~~~~~~~~~~~ 584 (677)
T 1t9b_A 511 GLGTMGYGLPAAIGAQVAK----PESLVIDIDGDASFNMT-L-TELSSAVQAGTPVKILILNNEEQGMVTQWQSLFYEHR 584 (677)
T ss_dssp SSCCTTCHHHHHHHHHHHC----TTSEEEEEEEHHHHHHH-G-GGHHHHHHHTCCCEEEEEECSSCHHHHHHHHHHSTTC
T ss_pred CcchhhchHHHHHHHHHhC----CCCeEEEEEeehHHhcc-H-HHHHHHHHhCCCeEEEEEeCCCchhhhhhhhhhcCCC
Confidence 3589999999999999984 67899999999999884 4 459999999999865555 55688754321 1
Q ss_pred ----ccCCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q 017890 308 ----QFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNF 362 (364)
Q Consensus 308 ----~~~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R 362 (364)
.....++.+++++||+++++|+ +.+++.+++++|++ .++|+|||++|.|
T Consensus 585 ~~~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~al~~a~~----~~gp~lIev~~~~ 637 (677)
T 1t9b_A 585 YSHTHQLNPDFIKLAEAMGLKGLRVK--KQEELDAKLKEFVS----TKGPVLLEVEVDK 637 (677)
T ss_dssp CCSCCCCCCCHHHHHHHTTCEEEEEC--SHHHHHHHHHHHHH----CSSCEEEEEEBCS
T ss_pred cccCcCCCCCHHHHHHHcCCeEEEEC--CHHHHHHHHHHHHH----CCCcEEEEEEecC
Confidence 1234689999999999999997 68899999988875 5789999999986
No 33
>2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains; HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A*
Probab=99.60 E-value=3.7e-16 Score=162.74 Aligned_cols=115 Identities=19% Similarity=0.276 Sum_probs=94.9
Q ss_pred CCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcC-Ccccccccc--------
Q 017890 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNN-GWAISTNIS-------- 306 (364)
Q Consensus 236 sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NN-g~ais~~~~-------- 306 (364)
.|+||+++|.|+|+|+|. ++++|||++|||+++++ .++|++|.++++|+++||.|| +|++.....
T Consensus 423 ~g~mG~~l~~AiGaala~----~~~~vv~i~GDG~~~~~--~~~L~ta~~~~l~~~ivv~nN~~~~~~~~~~~~~~~~~~ 496 (589)
T 2pgn_A 423 EGILGCGFPMALGAQLAE----PNSRVFLGTGDGALYYH--FNEFRVAVEHKLPVITMVFTNESYGANWTLMNHQFGQNN 496 (589)
T ss_dssp TCCTTCHHHHHHHHHHHC----TTSCEEEEEEHHHHHHH--GGGHHHHHHTTCCCEEEEEECSBCHHHHHHHHHHHSSCC
T ss_pred cchhhhHHHHHHHHHHhC----CCCcEEEEEeeHHHHhh--HHHHHHHHHhCCCeEEEEEECCCcccchHHHHhhcCCCc
Confidence 489999999999999985 47889999999999985 478999999999986666555 588765421
Q ss_pred -cccCCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q 017890 307 -EQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNF 362 (364)
Q Consensus 307 -~~~~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R 362 (364)
......++.+++++||+++++|+ +.+++.+++++|++ .++|+|||++|+|
T Consensus 497 ~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~----~~gp~liev~~~~ 547 (589)
T 2pgn_A 497 WTEFMNPDWVGIAKAFGAYGESVR--ETGDIAGALQRAID----SGKPALIEIPVSK 547 (589)
T ss_dssp SCBCCCCCHHHHHHHHTCEEEECT--TTCCHHHHHHHHHH----HCSCEEEEEECCS
T ss_pred cccCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh----CCCCEEEEEEecC
Confidence 22335689999999999999998 45688888988875 4789999999986
No 34
>2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A {Acetobacter pasteurianus}
Probab=99.59 E-value=8.8e-16 Score=158.97 Aligned_cols=116 Identities=19% Similarity=0.280 Sum_probs=95.5
Q ss_pred cCCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEE-EcCCccccccccc----cc
Q 017890 235 ISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFIC-RNNGWAISTNISE----QF 309 (364)
Q Consensus 235 ~sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV-~NNg~ais~~~~~----~~ 309 (364)
..++||+++|.|+|+|+|. ++++|||++|||+++++ +++|++|+++++|+++|| +||+|++.....+ ..
T Consensus 407 ~~g~mG~~l~~A~G~ala~----~~~~vv~~~GDG~~~~~--~~eL~ta~~~~l~~~ivv~nN~~~~~~~~~~~~~~~~~ 480 (566)
T 2vbi_A 407 QWGHIGWSVPSAFGNAMGS----QDRQHVVMVGDGSFQLT--AQEVAQMVRYELPVIIFLINNRGYVIEIAIHDGPYNYI 480 (566)
T ss_dssp TTCCTTTHHHHHHHHHHTC----TTSEEEEEEEHHHHHHH--GGGHHHHHHTTCCCEEEEEECSSCHHHHTTSCCGGGCC
T ss_pred cccchhhHHHHHHHHHHhC----CCCcEEEEEcchHHHhh--HHHHHHHHHhCCCcEEEEEECCcceEEEeeccCCccCC
Confidence 3589999999999999985 57899999999999984 456999999999975555 5557988765432 22
Q ss_pred CCccHHHHHhhcCe-----EEEEEeCCCHHHHHHHHHHHHHHhhcC-CCcEEEEEEeec
Q 017890 310 RSDGIVVKGRAYGI-----RSIRVDGNDALAVYTAVQAAREMAISE-KRPVLVEVRLNF 362 (364)
Q Consensus 310 ~~~~ia~~a~a~G~-----~~~~VDGnD~~av~~a~~~A~~~ar~~-~~P~LIea~T~R 362 (364)
...++.+++++||+ ++++|+ +.+++.+++++|++ . ++|+|||++|.|
T Consensus 481 ~~~d~~~~a~a~G~~~~~~~~~~v~--~~~el~~al~~a~~----~~~gp~liev~~~~ 533 (566)
T 2vbi_A 481 KNWDYAGLMEVFNAGEGHGLGLKAT--TPKELTEAIARAKA----NTRGPTLIECQIDR 533 (566)
T ss_dssp CCCCTTTHHHHHHTTTCCCEEEEEC--SHHHHHHHHHHHHH----CCSSCEEEEEECCT
T ss_pred CCCCHHHHHHHcCCCCCCccEEEeC--CHHHHHHHHHHHHh----cCCCcEEEEEEeCc
Confidence 34689999999999 999998 68899999988875 4 789999999986
No 35
>2vbf_A Branched-chain alpha-ketoacid decarboxylase; KDCA, flavoprotein, THDP-dependent enzymes, thiamine pyrophosphate, lyase; HET: TPP; 1.60A {Lactococcus lactis} PDB: 2vbg_A*
Probab=99.59 E-value=1.1e-15 Score=158.33 Aligned_cols=117 Identities=16% Similarity=0.229 Sum_probs=93.8
Q ss_pred cCCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEE-EcCCcccccccc---c---
Q 017890 235 ISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFIC-RNNGWAISTNIS---E--- 307 (364)
Q Consensus 235 ~sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV-~NNg~ais~~~~---~--- 307 (364)
..++||+++|.|+|+|+|. ++++|||++|||+++++ +++|++|.++++|+++|| +||+|++..... .
T Consensus 423 ~~g~mG~~l~~A~Gaala~----~~~~vv~~~GDG~~~~~--~~eL~ta~~~~l~~~ivv~nN~~~~~~~~~~~~~~~~~ 496 (570)
T 2vbf_A 423 LWGSIGYTFPAALGSQIAD----KESRHLLFIGDGSLQLT--VQELGLSIREKLNPICFIINNDGYTVEREIHGPTQSYN 496 (570)
T ss_dssp TTCCTTTHHHHHHHHHHHC----TTSEEEEEEEHHHHHHH--GGGHHHHHHTTCCCEEEEEESSSCHHHHHHSCTTCGGG
T ss_pred cchhhhhhHHHHHHHHHhC----CCCcEEEEEcchhhhcC--HHHHHHHHHcCCCCEEEEEECCchHHHHHHhccCCCcc
Confidence 4589999999999999985 57899999999999984 456999999999976555 555798765321 1
Q ss_pred ccCCccHHHHHhhcCeE-----EEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q 017890 308 QFRSDGIVVKGRAYGIR-----SIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNF 362 (364)
Q Consensus 308 ~~~~~~ia~~a~a~G~~-----~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R 362 (364)
.....++.+++++||++ +++|+ +.+++.++++++. ++.++|+|||++|+|
T Consensus 497 ~~~~~d~~~~a~a~G~~~~~~~~~~v~--~~~el~~al~~a~---~~~~~p~liev~~~~ 551 (570)
T 2vbf_A 497 DIPMWNYSKLPETFGATEDRVVSKIVR--TENEFVSVMKEAQ---ADVNRMYWIELVLEK 551 (570)
T ss_dssp CCCCCCGGGHHHHTTCCTTTEEEEEEC--BHHHHHHHHHHHH---HCTTSEEEEEEECCT
T ss_pred CCCCCCHHHHHHHcCCCcCCcceEEec--CHHHHHHHHHHHH---hcCCCcEEEEEEcCc
Confidence 12346899999999998 89997 5888888888742 246789999999986
No 36
>1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A* 1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A*
Probab=99.59 E-value=2.1e-15 Score=156.97 Aligned_cols=116 Identities=22% Similarity=0.245 Sum_probs=94.4
Q ss_pred cCCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEE-EcCCcccccccc-------
Q 017890 235 ISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFIC-RNNGWAISTNIS------- 306 (364)
Q Consensus 235 ~sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV-~NNg~ais~~~~------- 306 (364)
..|+||+++|.|+|+|+|. ++++|||++|||+++++ .++|++|+++++|+++|| +||+|++.....
T Consensus 424 ~~G~~G~~l~~AiGaala~----~~~~vv~i~GDGs~~~~--~~~L~ta~~~~l~~~ivv~NN~~~~~~~~~~~~~~~~~ 497 (590)
T 1ybh_A 424 GLGAMGFGLPAAIGASVAN----PDAIVVDIDGDGSFIMN--VQELATIRVENLPVKVLLLNNQHLGMVMQWEDRFYKAN 497 (590)
T ss_dssp SSCCTTCHHHHHHHHHHHC----TTSCEEEEEEHHHHHHT--TTHHHHHHHTTCCEEEEEEECSBCHHHHHHHHHHSTTC
T ss_pred CcccccchHHHHHHHHHhC----CCCcEEEEEccchhhcc--HHHHHHHHHhCCCcEEEEEECCcchHHHHHHHHhcCCc
Confidence 3589999999999999985 47889999999999985 457999999999976555 555788754211
Q ss_pred ---ccc--------CCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q 017890 307 ---EQF--------RSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNF 362 (364)
Q Consensus 307 ---~~~--------~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R 362 (364)
... ...++.+++++||+++++|+ +.+++.+++++|++ .++|+|||++|+|
T Consensus 498 ~~~~~~~~p~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~----~~gp~liev~~~~ 558 (590)
T 1ybh_A 498 RAHTFLGDPAQEDEIFPNMLLFAAACGIPAARVT--KKADLREAIQTMLD----TPGPYLLDVICPH 558 (590)
T ss_dssp CCSCBCSCGGGTTSCSSCHHHHHHHTTCCEEEEC--BHHHHHHHHHHHHH----SSSCEEEEEECCT
T ss_pred cccccccccccccCCCCCHHHHHHHcCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEecC
Confidence 101 13589999999999999997 68899999988876 5799999999986
No 37
>2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase, flavoprotein, metal-binding, alcohol fermentation; HET: TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A 3oe1_A* 1zpd_A*
Probab=99.58 E-value=1.9e-15 Score=156.53 Aligned_cols=117 Identities=16% Similarity=0.225 Sum_probs=95.6
Q ss_pred cCCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEE-EEcCCccccccccc----cc
Q 017890 235 ISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFI-CRNNGWAISTNISE----QF 309 (364)
Q Consensus 235 ~sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfV-V~NNg~ais~~~~~----~~ 309 (364)
..++||+++|.|+|+|+|. ++++|||++|||+++++ +++|++|.++++|+++| ++||+|++.....+ ..
T Consensus 411 ~~g~~G~~l~~A~G~ala~----~~~~vv~i~GDGs~~~~--~~el~ta~~~~l~~~ivv~NN~~~~~~~~~~~~~~~~~ 484 (568)
T 2wvg_A 411 QWGHIGWSVPAAFGYAVGA----PERRNILMVGDGSFQLT--AQEVAQMVRLKLPVIIFLINNYGYTIEVMIHDGPYNNI 484 (568)
T ss_dssp TTCCTTTHHHHHHHHHHHC----TTSEEEEEEEHHHHHHH--GGGHHHHHHTTCCCEEEEEECSSCHHHHTTSCCGGGCC
T ss_pred CcchhhhHHHHHHHHHHhC----CCCcEEEEEcChhHhcc--HHHHHHHHHcCCCcEEEEEECCcceEeeeeccCCCcCC
Confidence 3589999999999999985 57899999999999884 45599999999997555 55667988765432 22
Q ss_pred CCccHHHHHhhcCe---------EEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q 017890 310 RSDGIVVKGRAYGI---------RSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNF 362 (364)
Q Consensus 310 ~~~~ia~~a~a~G~---------~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R 362 (364)
...++.+++++||+ ++++|+ +.+++.++++++++. .++|+|||++|+|
T Consensus 485 ~~~d~~~~a~a~G~~~~~~~~~~~~~~v~--~~~el~~al~~a~~~---~~gp~liev~~~~ 541 (568)
T 2wvg_A 485 KNWDYAGLMEVFNGNGGYDSGAGKGLKAK--TGGELAEAIKVALAN---TDGPTLIECFIGR 541 (568)
T ss_dssp CCCCHHHHHHHHHCTTSSSCCCCEEEEES--BHHHHHHHHHHHHHC---CSSCEEEEEECCT
T ss_pred CCCCHHHHHHHhCCCcccccCCcceEEeC--CHHHHHHHHHHHHhc---CCCcEEEEEEcCc
Confidence 34689999999999 999997 688999999888762 2789999999986
No 38
>1ovm_A Indole-3-pyruvate decarboxylase; thiamine diphosphate, indole-3-acetic acid, TDP dependent enzyme, lyase; HET: TPP; 2.65A {Enterobacter cloacae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9
Probab=99.58 E-value=9.7e-16 Score=157.93 Aligned_cols=116 Identities=18% Similarity=0.211 Sum_probs=93.2
Q ss_pred cCCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEc-CCcccccccc------c
Q 017890 235 ISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRN-NGWAISTNIS------E 307 (364)
Q Consensus 235 ~sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~N-Ng~ais~~~~------~ 307 (364)
..|+||+++|.|+|+|+|. ++++|||++|||+++++ +++|.+|.++++|+++||.| |+|++..... .
T Consensus 406 ~~g~mG~~l~~A~G~a~a~----~~~~vv~~~GDG~~~~~--~~el~ta~~~~l~~~ivv~nN~~~~~~~~~~~~~~~~~ 479 (552)
T 1ovm_A 406 LWGSIGYTLAAAFGAQTAC----PNRRVIVLTGDGAAQLT--IQELGSMLRDKQHPIILVLNNEGYTVERAIHGAEQRYN 479 (552)
T ss_dssp TTCCTTHHHHHHHHHHHHC----TTSCEEEEEEHHHHHHH--TTHHHHHHHTTCCCEEEEEESSSCHHHHHHSCTTCGGG
T ss_pred hhHhhhhHHHHHHHHHHhC----CCCcEEEEECchHHHhH--HHHHHHHHHhCCCCEEEEEECCCCeEEEeeccCCCCcc
Confidence 3589999999999999985 46889999999999874 56699999999997666554 4698864321 1
Q ss_pred ccCCccHHHHHhhcCe----EEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q 017890 308 QFRSDGIVVKGRAYGI----RSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNF 362 (364)
Q Consensus 308 ~~~~~~ia~~a~a~G~----~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R 362 (364)
.....++.+++++||+ ++++|+ +.+++.+++++|+ +.++|+|||++|.+
T Consensus 480 ~~~~~d~~~~a~a~G~~~~~~~~~v~--~~~~l~~al~~a~----~~~gp~liev~~~~ 532 (552)
T 1ovm_A 480 DIALWNWTHIPQALSLDPQSECWRVS--EAEQLADVLEKVA----HHERLSLIEVMLPK 532 (552)
T ss_dssp CCCCCCGGGSTTTSCSSCCEEEEEEC--BHHHHHHHHHHHT----TCSSEEEEEEECCT
T ss_pred cCCCCCHHHHHHHhCCCcCCCEEEeC--CHHHHHHHHHHHH----hCCCCEEEEEEcCc
Confidence 1234689999999999 999998 5788888887665 36889999999986
No 39
>2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A* 2jib_A*
Probab=99.57 E-value=4.4e-15 Score=153.76 Aligned_cols=116 Identities=16% Similarity=0.131 Sum_probs=94.1
Q ss_pred cCCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCC-c-cccccc--ccc--
Q 017890 235 ISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNG-W-AISTNI--SEQ-- 308 (364)
Q Consensus 235 ~sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg-~-ais~~~--~~~-- 308 (364)
..|+||+++|.|+|+++| ++++|||++|||++++. .++|++|.++++|+++||.||+ | ++.... ...
T Consensus 424 ~~g~~G~~l~~AiGaala-----~~~~vv~i~GDGsf~~~--~~el~ta~~~~l~~~ivv~NN~~~~~~~~~~~~~~~~~ 496 (568)
T 2c31_A 424 TWGVMGIGMGYCVAAAAV-----TGKPVIAVEGDSAFGFS--GMELETICRYNLPVTVIIMNNGGIYKGNEADPQPGVIS 496 (568)
T ss_dssp TTTCSSCHHHHHHHHHHH-----HCSCEEEEEEHHHHHTT--GGGHHHHHHTTCCEEEEEEESSBSSCSCCCCSBTTBCC
T ss_pred CCccccccHHHHHHHHhC-----CCCcEEEEEcchHhhcc--HHHHHHHHHhCCCeEEEEEeCchhHHHHHHHhhcCCcc
Confidence 458999999999999997 46789999999999874 4569999999999988877776 3 443211 000
Q ss_pred ---cCCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeecc
Q 017890 309 ---FRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNFL 363 (364)
Q Consensus 309 ---~~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R~ 363 (364)
....++.+++++||+++++|+ +.+++.+++++|++ .++|+|||++|.|-
T Consensus 497 ~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~liev~~~~~ 548 (568)
T 2c31_A 497 CTRLTRGRYDMMMEAFGGKGYVAN--TPAELKAALEEAVA----SGKPCLINAMIDPD 548 (568)
T ss_dssp TTBCCCCCHHHHHHTTTCEEEEES--SHHHHHHHHHHHHH----HTSCEEEEEEBCTT
T ss_pred cCcCCCCCHHHHHHHcCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEeccc
Confidence 335689999999999999997 68999999998875 47899999999863
No 40
>2nxw_A Phenyl-3-pyruvate decarboxylase; thiamine pyrophosphate, asymmetric dimer of dimers, open ACT loops, lyase; HET: TPP; 1.50A {Azospirillum brasilense} PDB: 2q5j_A* 2q5l_A* 2q5o_A* 2q5q_A*
Probab=99.57 E-value=1.9e-15 Score=156.71 Aligned_cols=115 Identities=14% Similarity=0.176 Sum_probs=94.0
Q ss_pred CCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEE-EcCCcccccccc-----ccc
Q 017890 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFIC-RNNGWAISTNIS-----EQF 309 (364)
Q Consensus 236 sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV-~NNg~ais~~~~-----~~~ 309 (364)
.|+||+++|.|+|+|+|. ++++|||++|||++++ .+++|++|.++++|+++|| +||+|++..... ...
T Consensus 421 ~g~mG~~l~~A~G~ala~----~~~~vv~i~GDG~~~~--~~~~l~ta~~~~l~~~ivv~nN~~~~~~~~~~~~~~~~~~ 494 (565)
T 2nxw_A 421 YAGMGFGVPAGIGAQCVS----GGKRILTVVGDGAFQM--TGWELGNCRRLGIDPIVILFNNASWEMLRTFQPESAFNDL 494 (565)
T ss_dssp TCCTTCHHHHHHHHHHHT----TTCCEEEEEEHHHHHH--HGGGGGGHHHHTCCCEEEEEECSBCHHHHHHCTTCGGGBC
T ss_pred cccccccchHHHHHHHhC----CCCcEEEEEechHHHh--hHHHHHHHHHhCCCCEEEEEECCCCcEEeeecccCCCCcC
Confidence 589999999999999985 4678999999999985 4677999999999976555 555688754321 123
Q ss_pred CCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcE-EEEEEeec
Q 017890 310 RSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPV-LVEVRLNF 362 (364)
Q Consensus 310 ~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~-LIea~T~R 362 (364)
...++.+++++||+++++|+ +.+++.+++++|++ .++|+ |||++|+|
T Consensus 495 ~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~----~~gp~~liev~~~~ 542 (565)
T 2nxw_A 495 DDWRFADMAAGMGGDGVRVR--TRAELKAALDKAFA----TRGRFQLIEAMIPR 542 (565)
T ss_dssp CCCCHHHHTGGGTSEEEEEC--BHHHHHHHHHHHHH----CCSSCEEEEEECCT
T ss_pred CCCCHHHHHHHcCCCEEEeC--CHHHHHHHHHHHHh----cCCCeEEEEEEccc
Confidence 45689999999999999998 57899999988875 46888 99999986
No 41
>3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A*
Probab=99.57 E-value=3.7e-15 Score=153.85 Aligned_cols=116 Identities=28% Similarity=0.302 Sum_probs=92.3
Q ss_pred cCCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEE-cCCcccccccc-------
Q 017890 235 ISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICR-NNGWAISTNIS------- 306 (364)
Q Consensus 235 ~sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~-NNg~ais~~~~------- 306 (364)
..|+||+++|.|+|+++|. ++++|||++|||+++++ .++|++|.++++|+++||. ||+|++.....
T Consensus 404 ~~g~mG~~l~~AiGaala~----~~~~vv~i~GDGs~~~~--~~~L~ta~~~~l~~~ivv~nN~~~g~~~~~~~~~~~~~ 477 (549)
T 3eya_A 404 NHGSMANAMPQALGAQATE----PERQVVAMCGDGGFSML--MGDFLSVVQMKLPVKIVVFNNSVLGFVAMEMKAGGYLT 477 (549)
T ss_dssp TTCCTTCHHHHHHHHHHHS----TTSCEEEEEEHHHHHHT--GGGHHHHHHTTCCCEEEEEECSBCCCC-----------
T ss_pred CCchhhhHHHHHHHHHHhC----CCCcEEEEEccchhhcc--HHHHHHHHHhCCCeEEEEEeCCccHHHHHHHHhcCCCC
Confidence 4589999999999999885 57889999999999875 4669999999999765554 55687643211
Q ss_pred --cccCCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q 017890 307 --EQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNF 362 (364)
Q Consensus 307 --~~~~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R 362 (364)
......++.+.+++||+++++|+ +++++.+++++|++ .++|+|||++|.+
T Consensus 478 ~~~~~~~~d~~~~a~a~G~~~~~v~--~~~~l~~al~~a~~----~~gp~liev~~~~ 529 (549)
T 3eya_A 478 DGTELHDTNFARIAEACGITGIRVE--KASEVDEALQRAFS----IDGPVLVDVVVAK 529 (549)
T ss_dssp -CCBCCCCCHHHHHHHTTSEEEEEC--SGGGHHHHHHHHHH----SSSCEEEEEEBCC
T ss_pred cCCcCCCCCHHHHHHHcCCcEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEecc
Confidence 11234689999999999999997 67788888888876 5899999999976
No 42
>2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia coli} PDB: 2q27_A* 2q29_A*
Probab=99.56 E-value=5.9e-15 Score=152.57 Aligned_cols=115 Identities=14% Similarity=0.119 Sum_probs=93.0
Q ss_pred cCCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCC-c-cccccc---c---
Q 017890 235 ISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNG-W-AISTNI---S--- 306 (364)
Q Consensus 235 ~sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg-~-ais~~~---~--- 306 (364)
..|+||+++|.|+|+++| ++++|||++|||++++. + ++|.+|.++++|+++||.||+ | ++.... .
T Consensus 419 ~~g~~G~~l~~AiGaa~a-----~~~~vv~i~GDGsf~~~-~-~el~ta~~~~l~~~ivv~NN~~~~~~~~~~~~~~~~~ 491 (564)
T 2q28_A 419 TWGVMGIGMGYAIGASVT-----SGSPVVAIEGDSAFGFS-G-MEIETICRYNLPVTIVIFNNGGIYRGDGVDLSGAGAP 491 (564)
T ss_dssp TTTCTTCHHHHHHHHHHH-----HCSCEEEEEEHHHHHTT-G-GGHHHHHHTTCCEEEEEEECSBSSCSCCCCTTSSCCC
T ss_pred CCCcccchHHHHHHHhhc-----CCCcEEEEEcchHhhcc-H-HHHHHHHHhCCCeEEEEEeCchhHHHHHHHHhccCCc
Confidence 458999999999999997 46789999999999874 4 559999999999987777775 4 553211 0
Q ss_pred c---ccCCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q 017890 307 E---QFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNF 362 (364)
Q Consensus 307 ~---~~~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R 362 (364)
. .....++.+++++||+++++|+ +++++.+++++|++ .++|+|||++|.|
T Consensus 492 ~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~liev~~~~ 544 (564)
T 2q28_A 492 SPTDLLHHARYDKLMDAFRGVGYNVT--TTDELRHALTTGIQ----SRKPTIINVVIDP 544 (564)
T ss_dssp CTTBCCTTCCGGGGGGGGTCEEEEEC--SHHHHHHHHHHHHH----HTSCEEEEEEBCT
T ss_pred cccccCCCCCHHHHHHHcCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEecc
Confidence 0 1124689999999999999997 68999999998875 4789999999986
No 43
>2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate synthase; transferase, metal-binding; HET: TPP; 2.35A {Bacillus subtilis}
Probab=99.51 E-value=5.1e-15 Score=154.60 Aligned_cols=114 Identities=18% Similarity=0.115 Sum_probs=90.7
Q ss_pred CCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEE-EcCCcccccccc--------
Q 017890 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFIC-RNNGWAISTNIS-------- 306 (364)
Q Consensus 236 sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV-~NNg~ais~~~~-------- 306 (364)
.++||+++|.|+|+|+|. +++|||++|||+++++ +. +|++|+++++|+++|| +||+|++.....
T Consensus 454 ~~~ig~~l~~AiGaala~-----~~~vv~i~GDGsf~~~-~~-eL~ta~~~~lp~~ivv~NN~~~~i~~~~~~~q~~~~~ 526 (604)
T 2x7j_A 454 ANGIDGVVSSAMGVCEGT-----KAPVTLVIGDLSFYHD-LN-GLLAAKKLGIPLTVILVNNDGGGIFSFLPQASEKTHF 526 (604)
T ss_dssp TCCSSSHHHHHHHHHHHH-----TSCEEEEEEHHHHHHT-GG-GGHHHHHHCCCEEEEEEECSSCGGGGGSGGGSCHHHH
T ss_pred cCCcCcHHHHHHHHHhcC-----CCcEEEEEccHHHHhH-HH-HHHHhhhcCCCeEEEEEeCCCCcccccCCCCccchhh
Confidence 368999999999999983 5789999999999985 44 5999999999986666 555788754221
Q ss_pred -cc---cCCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q 017890 307 -EQ---FRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNF 362 (364)
Q Consensus 307 -~~---~~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R 362 (364)
.. ....++.+++++||+++++|+ +.+++.+++++|+ +.++|+|||++|.|
T Consensus 527 ~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~----~~~gp~liev~~~~ 580 (604)
T 2x7j_A 527 EDLFGTPTGLDFKHAAALYGGTYSCPA--SWDEFKTAYAPQA----DKPGLHLIEIKTDR 580 (604)
T ss_dssp HHHTTCCCCCCTHHHHHHTTCEEECCS--SHHHHHHHCCCCC----SSCCEEEEEEECCH
T ss_pred HhhccCCCCCCHHHHHHHcCCeEEecC--CHHHHHHHHHHHH----hCCCCEEEEEECCc
Confidence 00 124589999999999999998 5788877777665 36899999999976
No 44
>3hww_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- carboxylate synthase; menaquinone, THDP, Mg, vitamin K2, carboxylase, magnesium; HET: AKG; 1.95A {Escherichia coli k-12} PDB: 3flm_A* 3hwx_A* 2jlc_A* 2jla_A*
Probab=99.50 E-value=1.3e-14 Score=150.16 Aligned_cols=113 Identities=20% Similarity=0.180 Sum_probs=85.7
Q ss_pred CCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCC-ccccccc-------cc
Q 017890 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNG-WAISTNI-------SE 307 (364)
Q Consensus 236 sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg-~ais~~~-------~~ 307 (364)
.|.+|+ +|.|+|+++| ++++|||++|||++++. +.| |++|.++++|+++||.||+ |++.... ..
T Consensus 416 ~g~~G~-l~~A~Gaa~a-----~~~~vv~i~GDGsf~~~-~~e-L~ta~~~~lpv~ivv~NN~~~~~~~~~~~~~~~~~~ 487 (556)
T 3hww_A 416 SGIDGL-LSTAAGVQRA-----SGKPTLAIVGDLSALYD-LNA-LALLRQVSAPLVLIVVNNNGGQIFSLLPTPQSERER 487 (556)
T ss_dssp CCSSSH-HHHHHHHHHH-----HCCCEEEEEEHHHHHHT-GGG-HHHHTTCSSCEEEEEEESCC----------------
T ss_pred cccccH-HHHHHHHHhc-----CCCcEEEEEccHHhhhc-chh-hHhhcccCCCcEEEEEECCCCCcccCCCCcchhHHH
Confidence 456677 9999999998 26789999999999874 444 9999999999988877776 5654321 11
Q ss_pred ---ccCCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q 017890 308 ---QFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNF 362 (364)
Q Consensus 308 ---~~~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R 362 (364)
.....++.+.|++||+++++|+ +.+++.+++++|++ .++|+|||++|.|
T Consensus 488 ~~~~~~~~d~~~~a~a~G~~~~~v~--~~~~l~~al~~a~~----~~gp~liev~~~~ 539 (556)
T 3hww_A 488 FYLMPQNVHFEHAAAMFELKYHRPQ--NWQELETAFADAWR----TPTTTVIEMVVND 539 (556)
T ss_dssp -CCCCCCCCSHHHHHHTTCEEECCS--SHHHHHHHHHHHTT----SSSEEEEEEECCS
T ss_pred hccCCCCCCHHHHHHHcCCcEEecC--CHHHHHHHHHHHHh----CCCCEEEEEECCc
Confidence 1235689999999999999997 57788777776654 6899999999986
No 45
>3lq1_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate synthase; menaquinone biosynthesis, sephchc synthase, structural genomics; 2.60A {Listeria monocytogenes}
Probab=99.44 E-value=5.4e-14 Score=146.13 Aligned_cols=110 Identities=17% Similarity=0.133 Sum_probs=78.8
Q ss_pred cccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcC-Cccccccc---c--c----c
Q 017890 239 IATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNN-GWAISTNI---S--E----Q 308 (364)
Q Consensus 239 LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NN-g~ais~~~---~--~----~ 308 (364)
+|+++|.|+|+|+ ++++|||++|||++++. + ++|++|.++++|+++||.|| +|++.... . . .
T Consensus 438 ~~g~l~~AiGaa~------~~~~vv~i~GDGsf~~~-~-~eL~ta~~~~l~~~ivv~NN~~~g~~~~~~~~~~~~~~~~~ 509 (578)
T 3lq1_A 438 IDGVVSSALGASV------VFQPMFLLIGDLSFYHD-M-NGLLMAKKYKMNLTIVIVNNDGGGIFSFLPQANEPKYFESL 509 (578)
T ss_dssp SSSHHHHHHHHTT------TSSSEEEEEEHHHHHHT-G-GGGHHHHHTTCCEEEEEECCC--------------------
T ss_pred cccHHHHHHHHhc------CCCCEEEEEchHHHHhh-H-HHHHhhccCCCCeEEEEEECCcCccccccccccccchhhhh
Confidence 3446999999863 37889999999999874 4 45999999999998777777 57765421 0 0 0
Q ss_pred c---CCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q 017890 309 F---RSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNF 362 (364)
Q Consensus 309 ~---~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R 362 (364)
+ ...++.+.|++||+++++|+ +.+++.+++++|++ .++|+|||++|.|
T Consensus 510 ~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~----~~gp~liev~~~~ 560 (578)
T 3lq1_A 510 FGTSTELDFRFAAAFYDADYHEAK--SVDELEEAIDKASY----HKGLDIIEVKTNR 560 (578)
T ss_dssp -----CCCTHHHHHHTTCEEEECC--SHHHHHHHHHHHTT----SSSEEEEEEC---
T ss_pred ccCCCCCCHHHHHHHcCCceEecC--CHHHHHHHHHHHHh----CCCCEEEEEECCc
Confidence 1 23589999999999999997 68888888877764 6899999999876
No 46
>2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur, iron-sulfur cluster, pyruvate catabolism, TPP-dependent enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP: c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB: 1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A* 2pda_A* 2uza_A*
Probab=98.78 E-value=1.7e-08 Score=113.43 Aligned_cols=97 Identities=13% Similarity=0.145 Sum_probs=75.0
Q ss_pred CCeEEEEeCCC-ccccccHHHHHHHHHHcCCCEEEEEEcCC-ccccccccc-------c---------cCCccHHHHHhh
Q 017890 259 DACAVAYTGDG-GTSEGDFHAALNFAAVMEAPVVFICRNNG-WAISTNISE-------Q---------FRSDGIVVKGRA 320 (364)
Q Consensus 259 ~~~vv~~~GDG-a~~eG~~~EALn~Aa~~~LPvIfVV~NNg-~ais~~~~~-------~---------~~~~~ia~~a~a 320 (364)
++.||++.||| ++++| +.| |.+|..+++||++||.||+ |+...-... . ....|+.+.|++
T Consensus 953 ~~~Vv~i~GDG~~~~mg-~~e-L~ta~~~~~~v~iiVlnN~~yg~tg~Q~s~~t~~~~~t~~~~~g~~~~~~D~~~iA~a 1030 (1231)
T 2c42_A 953 KKSVWIFGGDGWAYDIG-YGG-LDHVLASGEDVNVFVMDTEVYSNTGGQSSKATPTGAVAKFAAAGKRTGKKDLARMVMT 1030 (1231)
T ss_dssp CCEEEEEEEHHHHHTTT-HHH-HHHHHHTTCSCEEEEEECSSBTTTTCBCCTTSCTTCCBBTBTTCCSSCCCCHHHHHHT
T ss_pred CCcEEEEeCcHHHHHcc-hHH-HHHHHHhCCCeEEEEEECHHHHhHHhhhccCCCCCceeeecccCCCCCchhHHHHHHH
Confidence 47899999999 88987 554 9999999999988887776 554331110 0 112589999999
Q ss_pred cCeEEEEE-eC-CCHHHHHHHHHHHHHHhhcCCCcEEEEEEee
Q 017890 321 YGIRSIRV-DG-NDALAVYTAVQAAREMAISEKRPVLVEVRLN 361 (364)
Q Consensus 321 ~G~~~~~V-DG-nD~~av~~a~~~A~~~ar~~~~P~LIea~T~ 361 (364)
||++++++ .- .++.++.+++++|++ .++|+|||+.+-
T Consensus 1031 ~G~~~va~~~v~~~~~~l~~al~eAl~----~~GP~lI~v~~~ 1069 (1231)
T 2c42_A 1031 YGYVYVATVSMGYSKQQFLKVLKEAES----FPGPSLVIAYAT 1069 (1231)
T ss_dssp TSSSEEEEECTTTCHHHHHHHHHHHHH----SSSCEEEEEECC
T ss_pred CCCCEEEEEeccCCHHHHHHHHHHHHh----cCCCEEEEEeec
Confidence 99999964 33 489999999999987 589999999863
No 47
>2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex, transferase; HET: MSE TPP; 2.00A {Streptomyces clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A*
Probab=93.73 E-value=0.23 Score=51.05 Aligned_cols=106 Identities=13% Similarity=0.118 Sum_probs=72.2
Q ss_pred HHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhcCeE
Q 017890 245 QAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIR 324 (364)
Q Consensus 245 ~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~ 324 (364)
+|.|.|.+ .++-.+++|..|=|+++ ..-++.-|..-++|+|+|+-+-........ ......|....++.+--.
T Consensus 63 ~A~Gyar~---tg~p~v~~~TsGpG~~N---~~~~v~~A~~~~~Pll~itg~~~~~~~~~~-~~~Q~~d~~~~~~~~~k~ 135 (573)
T 2iht_A 63 AADVLARI---TGRPQACWATLGPGMTN---LSTGIATSVLDRSPVIALAAQSESHDIFPN-DTHQCLDSVAIVAPMSKY 135 (573)
T ss_dssp HHHHHHHH---HCSCEEEEECTTHHHHH---HHHHHHHHHHHTCCEEEEEEESCGGGCCTT-TSTTCCCHHHHHGGGSSE
T ss_pred HHHHHHHH---HCCCEEEEEccCchHHH---HHHHHHHHHhhCCCEEEEcccCcccccCCc-CccccCCHHHHHHhHhhE
Confidence 45566544 34445566666777665 556788888889999999877654322210 111223667777777767
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHhhcCC-CcEEEEEE
Q 017890 325 SIRVDGNDALAVYTAVQAAREMAISEK-RPVLVEVR 359 (364)
Q Consensus 325 ~~~VDGnD~~av~~a~~~A~~~ar~~~-~P~LIea~ 359 (364)
..++. +++++.+.+++|+..|..+. ||+.|++-
T Consensus 136 ~~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~iP 169 (573)
T 2iht_A 136 AVELQ--RPHEITDLVDSAVNAAMTEPVGPSFISLP 169 (573)
T ss_dssp EEECC--SGGGHHHHHHHHHHHHTBSSCCCEEEEEE
T ss_pred EEEcC--CHHHHHHHHHHHHHHHhcCCCceEEEEec
Confidence 77775 67788899999998888775 89999874
No 48
>2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains; HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A*
Probab=93.68 E-value=0.36 Score=49.73 Aligned_cols=104 Identities=21% Similarity=0.178 Sum_probs=72.3
Q ss_pred HHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCccccccc-ccccCCccHHHHHhhcCe
Q 017890 245 QAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNI-SEQFRSDGIVVKGRAYGI 323 (364)
Q Consensus 245 ~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~-~~~~~~~~ia~~a~a~G~ 323 (364)
+|.|.|.+ .++-.+++|..|=|+++ ..-++.-|..-++|+|+|+-+-........ .-| ..|... ++.+--
T Consensus 58 ~A~GyAr~---tg~p~v~~~TsGpG~~N---~~~gv~~A~~~~vPll~itg~~~~~~~~~~~~~Q--~~d~~~-~~~~tk 128 (589)
T 2pgn_A 58 MVNGYNYV---KDRSAAVGAWHCVGNLL---LHAAMQEARTGRIPAVHIGLNSDGRLAGRSEAAQ--QVPWQS-FTPIAR 128 (589)
T ss_dssp HHHHHHHH---HTSCCEEEEEEGGGGGG---CHHHHHHHHHTTCCEEEEEEESCGGGTTCTTCSS--CCCGGG-GTTTSS
T ss_pred HHHHHHHH---HCCCEEEEEecCchHHH---HHHHHHHHHhcCCCEEEEecCCcccccCCCCccc--ccChhh-ccccEE
Confidence 46666554 35567888889999887 356788888999999999876654322111 112 224555 666665
Q ss_pred EEEEEeCCCHHHHHHHHHHHHHHhhcCC-CcEEEEEE
Q 017890 324 RSIRVDGNDALAVYTAVQAAREMAISEK-RPVLVEVR 359 (364)
Q Consensus 324 ~~~~VDGnD~~av~~a~~~A~~~ar~~~-~P~LIea~ 359 (364)
...++. +++++.+.+.+|+..|..+. ||+.|++-
T Consensus 129 ~~~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~iP 163 (589)
T 2pgn_A 129 STQRVE--RLDKVGEAIHEAFRVAEGHPAGPAYVDIP 163 (589)
T ss_dssp EEEECC--SGGGHHHHHHHHHHHHTSSSCCEEEEEEE
T ss_pred EEeecC--CHHHHHHHHHHHHHHHhcCCCccEEEEeC
Confidence 666665 67788888999988888776 89999874
No 49
>1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A* 1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A*
Probab=93.64 E-value=0.23 Score=51.24 Aligned_cols=106 Identities=26% Similarity=0.252 Sum_probs=73.0
Q ss_pred hHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhcCe
Q 017890 244 PQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGI 323 (364)
Q Consensus 244 p~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~ 323 (364)
-+|.|.|.+. ++-.+++|..|=|+++ ..-++.-|..-++|+|+|+-+-....... ......|....++.+--
T Consensus 64 ~~A~Gyar~t---g~p~v~~~TsGpG~~N---~~~gv~~A~~~~vPll~itg~~~~~~~g~--~~~Q~~d~~~~~~~~~k 135 (590)
T 1ybh_A 64 FAAEGYARSS---GKPGICIATSGPGATN---LVSGLADALLDSVPLVAITGQVPRRMIGT--DAFQETPIVEVTRSITK 135 (590)
T ss_dssp HHHHHHHHHH---SSCEEEEECTTHHHHT---THHHHHHHHHHTCCEEEEEEECCGGGTTT--TCTTCCCHHHHHGGGSS
T ss_pred HHHHHHHHHH---CCCEEEEeccCchHHH---HHHHHHHHHhhCCCEEEEeCcCCccccCC--CcccccCHHHHHHHHhC
Confidence 3566666543 4455667777777776 45678888899999999987654322211 11222366777777766
Q ss_pred EEEEEeCCCHHHHHHHHHHHHHHhhcCC-CcEEEEEE
Q 017890 324 RSIRVDGNDALAVYTAVQAAREMAISEK-RPVLVEVR 359 (364)
Q Consensus 324 ~~~~VDGnD~~av~~a~~~A~~~ar~~~-~P~LIea~ 359 (364)
...+|. +++++.+++++|+..++.+. ||+.|++-
T Consensus 136 ~~~~v~--~~~~i~~~l~~A~~~a~~~~~GPV~l~iP 170 (590)
T 1ybh_A 136 HNYLVM--DVEDIPRIIEEAFFLATSGRPGPVLVDVP 170 (590)
T ss_dssp EEEECC--CGGGHHHHHHHHHHHHHSSSCCEEEEEEE
T ss_pred eEEecC--CHHHHHHHHHHHHHHHhhCCCceEEEEeC
Confidence 677775 78889999999998888764 89999864
No 50
>1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A*
Probab=93.42 E-value=0.24 Score=50.81 Aligned_cols=105 Identities=19% Similarity=0.105 Sum_probs=71.0
Q ss_pred HHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhcCeE
Q 017890 245 QAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIR 324 (364)
Q Consensus 245 ~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~ 324 (364)
+|.|.|.+ .++-.++++..|=|+++ ..-++.-|..-++|+|+|+-+-......... ....|....++.+--.
T Consensus 63 ~A~Gyar~---tg~p~v~~~TsGpG~~N---~~~~l~~A~~~~vPll~itg~~~~~~~~~~~--~Q~~d~~~~~~~~tk~ 134 (566)
T 1ozh_A 63 MAAAVGRI---TGKAGVALVTSGPGCSN---LITGMATANSEGDPVVALGGAVKRADKAKQV--HQSMDTVAMFSPVTKY 134 (566)
T ss_dssp HHHHHHHH---HSSCEEEEECSTHHHHT---THHHHHHHHHHTCCEEEEEEECCTTTC--------CCCHHHHHGGGCSE
T ss_pred HHHHHHHH---HCCCEEEEEccChHHHH---HHHHHHHHHhcCCCEEEEeCCCccccCCCCc--ccccCHHHHHHHHhhe
Confidence 46666554 34445666666777776 3566888888899999998766543221111 1224667777777777
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHhhcCC-CcEEEEEE
Q 017890 325 SIRVDGNDALAVYTAVQAAREMAISEK-RPVLVEVR 359 (364)
Q Consensus 325 ~~~VDGnD~~av~~a~~~A~~~ar~~~-~P~LIea~ 359 (364)
..+|. +++++.+.+++|+..|..+. ||+.|++-
T Consensus 135 ~~~v~--~~~~~~~~i~~A~~~A~~~r~GPV~l~iP 168 (566)
T 1ozh_A 135 AIEVT--APDALAEVVSNAFRAAEQGRPGSAFVSLP 168 (566)
T ss_dssp EEECC--SGGGHHHHHHHHHHHHHSSSCCEEEEEEE
T ss_pred EEEcC--CHHHHHHHHHHHHHHHhcCCCCeEEEEeC
Confidence 77775 67788888888888887774 89999874
No 51
>2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate, benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A* 3iaf_A* 3d7k_A*
Probab=93.41 E-value=0.3 Score=49.99 Aligned_cols=105 Identities=21% Similarity=0.167 Sum_probs=71.8
Q ss_pred HHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCC-ccHHHHHhhcCe
Q 017890 245 QAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRS-DGIVVKGRAYGI 323 (364)
Q Consensus 245 ~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~~~~~-~~ia~~a~a~G~ 323 (364)
+|.|.|.+. ++-.+++|..|=|+++ ..-++.-|..-++|+|+|+-+-......... ... .|....++.+--
T Consensus 56 ~A~Gyar~t---g~p~v~~~TsGpG~~N---~~~~l~~A~~~~~Pll~itg~~~~~~~~~~~--~Q~~~d~~~~~~~~tk 127 (563)
T 2uz1_A 56 AAEGYARAG---AKLGVALVTAGGGFTN---AVTPIANAWLDRTPVLFLTGSGALRDDETNT--LQAGIDQVAMAAPITK 127 (563)
T ss_dssp HHHHHHHHH---TSCEEEEECTTHHHHT---THHHHHHHHHHTCCEEEEEEECCGGGTTSCC--TTCCCCHHHHHGGGCS
T ss_pred HHHHHHHHh---CCCEEEEEccCccHHH---HHHHHHHHHhcCCCEEEEeCCCCcccCCchh--hhhhccHHHHhhhhhc
Confidence 566666543 4445566666767776 3456777888899999998776543222111 122 467777777777
Q ss_pred EEEEEeCCCHHHHHHHHHHHHHHhhcCC-CcEEEEEE
Q 017890 324 RSIRVDGNDALAVYTAVQAAREMAISEK-RPVLVEVR 359 (364)
Q Consensus 324 ~~~~VDGnD~~av~~a~~~A~~~ar~~~-~P~LIea~ 359 (364)
...++. +++++.+.+.+|+..+..+. ||+.|++-
T Consensus 128 ~~~~v~--~~~~~~~~l~~A~~~a~~~~~GPV~l~iP 162 (563)
T 2uz1_A 128 WAHRVM--ATEHIPRLVMQAIRAALSAPRGPVLLDLP 162 (563)
T ss_dssp EEEECC--CGGGHHHHHHHHHHHHHSSSCCCEEEEEE
T ss_pred eEEEcC--CHHHHHHHHHHHHHHhcCCCCceEEEEeC
Confidence 777775 67788888888888888765 89999874
No 52
>2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A {Acetobacter pasteurianus}
Probab=92.44 E-value=0.45 Score=48.65 Aligned_cols=107 Identities=20% Similarity=0.142 Sum_probs=66.4
Q ss_pred hHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCccccccc---cccc---CCccHHHH
Q 017890 244 PQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNI---SEQF---RSDGIVVK 317 (364)
Q Consensus 244 p~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~---~~~~---~~~~ia~~ 317 (364)
-+|.|.|.+ .+ -.++++..|=|+++ ..-++.-|...++|+|+|+-+-........ .... ...+....
T Consensus 55 ~~A~Gyar~---tg-~~v~~~TsGpG~~N---~~~gia~A~~~~vPll~itg~~~~~~~~~~~~~~~~~g~~~~~d~~~~ 127 (566)
T 2vbi_A 55 FSAEGYARS---NG-AAAAVVTFSVGAIS---AMNALGGAYAENLPVILISGAPNSNDQGTGHILHHTIGKTDYSYQLEM 127 (566)
T ss_dssp HHHHHHHHH---HS-CEEEEECTTTTHHH---HHHHHHHHHHTTCCEEEEEEECCGGGTTTTCBCTTSCSSSCCTHHHHH
T ss_pred HHHHHHHhh---cC-CeEEEEeCCCCHHH---HHHHHHHHHhhCCCEEEEECCCChHHhccCceeeeeccCcchHHHHHH
Confidence 356666654 34 44556666777775 456677888899999999976553221110 0000 11256677
Q ss_pred HhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEE
Q 017890 318 GRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVR 359 (364)
Q Consensus 318 a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~ 359 (364)
.+.+--...++. +++++.+.+++|+..|..+.+|+.|++-
T Consensus 128 ~~~~tk~~~~v~--~~~~~~~~l~~A~~~a~~~~GPV~l~iP 167 (566)
T 2vbi_A 128 ARQVTCAAESIT--DAHSAPAKIDHVIRTALRERKPAYLDIA 167 (566)
T ss_dssp HHTTCSEEEEEC--SSSSHHHHHHHHHHHHHHHTCCEEEEEE
T ss_pred HhhhEeEEEEeC--CHHHHHHHHHHHHHHHHhCCCCEEEEec
Confidence 777777777775 4445556666666666556799999874
No 53
>2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase, flavoprotein, metal-binding, alcohol fermentation; HET: TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A 3oe1_A* 1zpd_A*
Probab=92.38 E-value=0.52 Score=48.19 Aligned_cols=106 Identities=18% Similarity=0.119 Sum_probs=68.7
Q ss_pred HHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCccccccc---cccc---CCccHHHHH
Q 017890 245 QAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNI---SEQF---RSDGIVVKG 318 (364)
Q Consensus 245 ~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~---~~~~---~~~~ia~~a 318 (364)
+|.|.|.+. + ..++++..|=|+++ ..-++.-|..-++|+|+|+-+-........ .... ...+....+
T Consensus 56 ~A~Gyar~t---g-~~v~~~TsGpG~~N---~~~gia~A~~~~vPll~itg~~~~~~~~~~~~~~~~~g~~~~~d~~~~~ 128 (568)
T 2wvg_A 56 SAEGYARAK---G-AAAAVVTYSVGALS---AFDAIGGAYAENLPVILISGAPNNNDHAAGHVLHHALGKTDYHYQLEMA 128 (568)
T ss_dssp HHHHHHHHH---S-CEEEEECTTTTHHH---HHHHHHHHHHTTCCEEEEEEECCGGGTTTTCBCTTSCSSSCCCHHHHHH
T ss_pred HHHHHHHhh---C-CeEEEEeCCCCHHH---HHHHHHHHhhhCCCEEEEeCCCChhHhccCcceeeeccccchHHHHHHH
Confidence 566666543 4 45666667777775 456777888899999999976654221110 0000 112566777
Q ss_pred hhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEE
Q 017890 319 RAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVR 359 (364)
Q Consensus 319 ~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~ 359 (364)
+.+--...+|. +++++...+.+|+..|..+.||+.|++-
T Consensus 129 ~~~tk~~~~v~--~~~~~~~~l~~A~~~A~~~~GPV~l~iP 167 (568)
T 2wvg_A 129 KNITAAAEAIY--TPEEAPAKIDHVIKTALREKKPVYLEIA 167 (568)
T ss_dssp TTSCSCEEEEC--SGGGHHHHHHHHHHHHHHHTCCEEEEEE
T ss_pred HhhEeEEEEeC--CHHHHHHHHHHHHHHHHhCCCCEEEEec
Confidence 77766677775 5666777777777766666799999874
No 54
>3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A*
Probab=92.28 E-value=0.36 Score=49.22 Aligned_cols=105 Identities=14% Similarity=-0.002 Sum_probs=69.4
Q ss_pred HHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhcCeE
Q 017890 245 QAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIR 324 (364)
Q Consensus 245 ~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~ 324 (364)
+|.|.|.+ .++-.+++|..|=|+++ ..-++.-|..-++|+|+|+-+-....... ......+..+.++.+--.
T Consensus 56 ~A~GyAr~---tg~~~v~~~TsGpG~~N---~~~gi~~A~~~~vPvl~itg~~~~~~~~~--~~~Q~~d~~~~~~~~tk~ 127 (549)
T 3eya_A 56 AAGAEAQL---SGELAVCAGSCGPGNLH---LINGLFDCHRNHVPVLAIAAHIPSSEIGS--GYFQETHPQELFRECSHY 127 (549)
T ss_dssp HHHHHHHH---HSSCEEEEECTTHHHHT---THHHHHHHHHTTCCEEEEEEESCGGGTTS--CCTTCCCHHHHTSTTCSE
T ss_pred HHHHHHHH---hCCCEEEEeCCCCcHhh---hHHHHHHHHhhCCCEEEEeCCCchhhcCC--CCCCccCHHHHHhhhhhe
Confidence 46666554 34455667777888776 34678888899999999986543221111 111123566666666666
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEE
Q 017890 325 SIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVR 359 (364)
Q Consensus 325 ~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~ 359 (364)
..++. +++++.+.+.+|+..|....+|+.|++-
T Consensus 128 ~~~v~--~~~~~~~~i~~A~~~A~~~~GPV~l~iP 160 (549)
T 3eya_A 128 CELVS--SPEQIPQVLAIAMRKAVLNRGVSVVVLP 160 (549)
T ss_dssp EEECC--SGGGHHHHHHHHHHHHHHTTSEEEEEEE
T ss_pred EEEeC--CHHHHHHHHHHHHHHHhhCCCCEEEEeC
Confidence 66665 6777888888888777777899999863
No 55
>1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A*
Probab=92.15 E-value=0.45 Score=50.18 Aligned_cols=105 Identities=21% Similarity=0.222 Sum_probs=71.9
Q ss_pred HHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhcCeE
Q 017890 245 QAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIR 324 (364)
Q Consensus 245 ~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~ 324 (364)
+|.|.|.+ .++-.+++|..|=|+++ ..-++.-|..-++|+|+|+-+-....... ......|....++.+--.
T Consensus 135 aAdGyAr~---tGkpgvv~~TsGpG~~N---~~~gia~A~~d~vPllvItG~~~~~~~g~--~a~Q~~Dq~~i~~~~tk~ 206 (677)
T 1t9b_A 135 MAEGYARA---SGKPGVVLVTSGPGATN---VVTPMADAFADGIPMVVFTGQVPTSAIGT--DAFQEADVVGISRSCTKW 206 (677)
T ss_dssp HHHHHHHH---HSSCEEEEECSTHHHHT---THHHHHHHHHHTCCEEEEEEECCTTTTTS--CCTTCCCHHHHTGGGSSE
T ss_pred HHHHHHHH---HCCCEEEEECCChHHHH---HHHHHHHHHHcCCCEEEEeCCCChhhcCC--CCccccCHHHHhhhheeE
Confidence 56666654 34455677777777776 35568888888999999987654322111 111223556666666656
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHhhcC-CCcEEEEEE
Q 017890 325 SIRVDGNDALAVYTAVQAAREMAISE-KRPVLVEVR 359 (364)
Q Consensus 325 ~~~VDGnD~~av~~a~~~A~~~ar~~-~~P~LIea~ 359 (364)
..+|. +++++...+++|+..|..+ .||+.|++-
T Consensus 207 ~~~v~--~~~~i~~~i~~A~~~A~~grpGPV~l~lP 240 (677)
T 1t9b_A 207 NVMVK--SVEELPLRINEAFEIATSGRPGPVLVDLP 240 (677)
T ss_dssp EEECC--SGGGHHHHHHHHHHHHHSSSCCEEEEEEE
T ss_pred EEEcC--CHHHHHHHHHHHHHHHhhCCCceEEEEcC
Confidence 66775 7888999999999888876 589999875
No 56
>2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia coli} PDB: 2q27_A* 2q29_A*
Probab=92.06 E-value=0.34 Score=49.46 Aligned_cols=107 Identities=17% Similarity=0.191 Sum_probs=70.0
Q ss_pred HHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhcCeE
Q 017890 245 QAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIR 324 (364)
Q Consensus 245 ~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~ 324 (364)
+|.|.|.+. ++-.+++|..|=|+++ ..-++.-|..-++|+|+|+-+-...............+....++.+--.
T Consensus 60 ~A~Gyar~t---g~pgv~~~TsGpG~~N---~~~gi~~A~~~~vPll~itg~~~~~~~~~~~~~~Q~~dq~~~~~~~tk~ 133 (564)
T 2q28_A 60 AAAASGFLT---QKPGICLTVSAPGFLN---GLTALANATVNGFPMIMISGSSDRAIVDLQQGDYEELDQMNAAKPYAKA 133 (564)
T ss_dssp HHHHHHHHH---SSCEEEEECSHHHHHH---HHHHHHHHHHHTCCEEEEEEECCHHHHHTTSCCTTCCCHHHHHGGGSSE
T ss_pred HHHHHHHHh---CCCEEEEEccCchHHH---HHHHHHHHHhcCCCEEEEeCCCCccccCCCCCccccccHHHHHHHhhhe
Confidence 466666543 4445666666766665 5567888888999999998765432211000111223566677777666
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHhhcC-CCcEEEEEE
Q 017890 325 SIRVDGNDALAVYTAVQAAREMAISE-KRPVLVEVR 359 (364)
Q Consensus 325 ~~~VDGnD~~av~~a~~~A~~~ar~~-~~P~LIea~ 359 (364)
..+|. +++++.+.+++|+..|..+ .||+.|++-
T Consensus 134 ~~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~iP 167 (564)
T 2q28_A 134 AFRVN--QPQDLGIALARAIRVSVSGRPGGVYLDLP 167 (564)
T ss_dssp EEECC--SGGGHHHHHHHHHHHHHSSSCCEEEEEEE
T ss_pred eeecC--CHHHHHHHHHHHHHHHhcCCCceEEEEcC
Confidence 77775 6777888888888888774 589999864
No 57
>1yd7_A 2-keto acid:ferredoxin oxidoreductase subunit alpha; structural genomics, southeast collaboratory for structural genomics, secsg; 2.30A {Pyrococcus furiosus}
Probab=91.58 E-value=0.16 Score=50.26 Aligned_cols=108 Identities=13% Similarity=0.163 Sum_probs=59.9
Q ss_pred cchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCccc-ccccccccCCccHHHHHh
Q 017890 241 TQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAI-STNISEQFRSDGIVVKGR 319 (364)
Q Consensus 241 ~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ai-s~~~~~~~~~~~ia~~a~ 319 (364)
..+.+|+|+|++ ..+.++...|.|-... .+.|..++..++|+|+++-+..... ..+...+. .+.+..+..
T Consensus 75 ~a~~~a~Gaa~a-----G~r~~~~ts~~G~~~~---~d~l~~aa~~~~P~Vi~~~~~~~~~~g~~~~~~~-sd~~~~~~~ 145 (395)
T 1yd7_A 75 ASIAAAIGASWA-----GAKAMTATSGPGFSLM---QENIGYAVMTETPVVIVDVQRSGPSTGQPTLPAQ-GDIMQAIWG 145 (395)
T ss_dssp HHHHHHHHHHHT-----TCCEEEEEETTHHHHH---TTTCC----CCCCEEEEEEC------------------------
T ss_pred HHHHHHHHHHHh-----CCcEEEEeCchHHHHH---HHHHHHHHhcCCCEEEEEeeCCCCCCCCCcccch-hHHHHHHhc
Confidence 335567777665 2456777778887642 4456667788899998887765322 11111111 111222322
Q ss_pred ---hcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEE
Q 017890 320 ---AYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVR 359 (364)
Q Consensus 320 ---a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~ 359 (364)
.+|++++... ++.+.++.+..|.+.+++.+.|+++...
T Consensus 146 ~~g~~g~~vl~p~--~~qea~~l~~~A~~lA~~~~~PVi~~~~ 186 (395)
T 1yd7_A 146 THGDHSLIVLSPS--TVQEAFDFTIRAFNLSEKYRTPVILLTD 186 (395)
T ss_dssp ---CCCCEEECCC--SHHHHHHHHHHHHHHHHHHTSEEEEEEC
T ss_pred cCCCcceEEEeCC--CHHHHHHHHHHHHHHHHHHCCCEEEEcc
Confidence 2468777654 7999999999999888877899998753
No 58
>2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A* 2jib_A*
Probab=91.47 E-value=0.38 Score=49.26 Aligned_cols=107 Identities=16% Similarity=0.145 Sum_probs=69.2
Q ss_pred HHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhcCeE
Q 017890 245 QAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIR 324 (364)
Q Consensus 245 ~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~ 324 (364)
+|.|.|.+ .++-.+++|..|=|+++ ..-++..|..-++|+|+|+-+-...............|....++.+--.
T Consensus 62 ~A~GyAr~---tg~pgv~~~TsGpG~~N---~~~~i~~A~~~~vPll~itg~~~~~~~~~~~~~~Q~~dq~~~~~~~tk~ 135 (568)
T 2c31_A 62 AASIAGYI---EGKPGVCLTVSAPGFLN---GVTSLAHATTNCFPMILLSGSSEREIVDLQQGDYEEMDQMNVARPHCKA 135 (568)
T ss_dssp HHHHHHHH---HSSCEEEEECSHHHHHH---HHHHHHHHHHHTCCEEEEEEECCHHHHHTTCCCTTCCCHHHHSGGGSSE
T ss_pred HHHHHHHH---hCCCEEEEEcCCccHHH---HHHHHHHHHhcCCCEEEEccCCCccccCCCCCcccccCHHHHHHhhhhe
Confidence 46666654 34445666666767665 5567888888999999998765432211000111123556666666666
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHhhc-CCCcEEEEEE
Q 017890 325 SIRVDGNDALAVYTAVQAAREMAIS-EKRPVLVEVR 359 (364)
Q Consensus 325 ~~~VDGnD~~av~~a~~~A~~~ar~-~~~P~LIea~ 359 (364)
..+|. +++++...+.+|+..|.. ..||+.|++-
T Consensus 136 ~~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~iP 169 (568)
T 2c31_A 136 SFRIN--SIKDIPIGIARAVRTAVSGRPGGVYVDLP 169 (568)
T ss_dssp EEECC--SGGGHHHHHHHHHHHHHSSSCCEEEEEEE
T ss_pred eeecC--CHHHHHHHHHHHHHHhcCCCCceEEEeCC
Confidence 67775 677788888888888877 4589999864
No 59
>1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A {Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2dji_A* 1v5f_A* 1v5g_A*
Probab=91.42 E-value=0.36 Score=49.79 Aligned_cols=104 Identities=23% Similarity=0.077 Sum_probs=69.1
Q ss_pred HHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhcCeE
Q 017890 245 QAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIR 324 (364)
Q Consensus 245 ~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~ 324 (364)
+|.|.|.+ .++-.++++..|=|+++ ..-++.-|..-++|+|+|+-+-..........| ..+....++.+--.
T Consensus 58 ~A~GyAr~---tgk~~v~~~tsGpG~~N---~~~gl~~A~~~~vPll~Itg~~p~~~~g~~~~Q--~~d~~~~~~~~tk~ 129 (590)
T 1v5e_A 58 AAVMQSKF---GGNLGVTVGSGGPGASH---LINGLYDAAMDNIPVVAILGSRPQRELNMDAFQ--ELNQNPMYDHIAVY 129 (590)
T ss_dssp HHHHHHHT---TCCCCEEEECTTHHHHT---THHHHHHHHHHTCCEEEEEEECCGGGTTTTCTT--CCCCHHHHHTTCSE
T ss_pred HHHHHHHH---HCCCEEEEeCcChHHHH---HHHHHHHHHhcCCCEEEEcCCCCcccCCCCccc--ccCHHHHHHhhccE
Confidence 45555543 34445666666777776 355677788889999999877654322211111 23556667777656
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHhhcCC-CcEEEEEE
Q 017890 325 SIRVDGNDALAVYTAVQAAREMAISEK-RPVLVEVR 359 (364)
Q Consensus 325 ~~~VDGnD~~av~~a~~~A~~~ar~~~-~P~LIea~ 359 (364)
..++. +++++.+.+++|++.+..+. +|+.| +-
T Consensus 130 ~~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l-iP 162 (590)
T 1v5e_A 130 NRRVA--YAEQLPKLVDEAARMAIAKRGVAVLE-VP 162 (590)
T ss_dssp EEECC--SGGGHHHHHHHHHHHHHHTTSEEEEE-EE
T ss_pred EEEeC--CHHHHHHHHHHHHHHHhcCCCceEEE-Ec
Confidence 77775 67788888888888888777 89998 53
No 60
>3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis sugar metaboli transferase; HET: TPP; 1.75A {Homo sapiens} PDB: 3ooy_A*
Probab=91.30 E-value=1.1 Score=46.89 Aligned_cols=101 Identities=14% Similarity=0.081 Sum_probs=64.8
Q ss_pred HHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCccc--ccccccccCCccHHHHHhhcCe
Q 017890 246 AVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAI--STNISEQFRSDGIVVKGRAYGI 323 (364)
Q Consensus 246 AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ai--s~~~~~~~~~~~ia~~a~a~G~ 323 (364)
++|+|.++-+.+..+++++.++++.. -.++.+..++..++|+++++...+++. .++++ .+..+++-...--|+
T Consensus 367 ~v~~a~G~A~~G~~~~~~~~f~~Fl~---~a~dqi~~~a~~~~~v~~v~~~~g~~~G~dG~tH--~~~ed~a~l~~iP~l 441 (616)
T 3mos_A 367 MVSIAVGCATRNRTVPFCSTFAAFFT---RAFDQIRMAAISESNINLCGSHCGVSIGEDGPSQ--MALEDLAMFRSVPTS 441 (616)
T ss_dssp HHHHHHHHHGGGCCEEEEEEEGGGGG---GGHHHHHHHHHTTCCEEEEEESBSGGGCTTCGGG--CBSSHHHHHHTSTTE
T ss_pred HHHHHHHHHHcCCCCEEEEehHHHHH---HHHHHHHHHHHhCCCeEEEEECCCccccCCCCcc--cCHHHHHHhcCCCCC
Confidence 33333333334443566778999875 356778888899999999988777633 33433 234455544444477
Q ss_pred EEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEE
Q 017890 324 RSIRVDGNDALAVYTAVQAAREMAISEKRPVLVE 357 (364)
Q Consensus 324 ~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIe 357 (364)
.++.- .|+.+++.+++.|.+ .++|++|-
T Consensus 442 ~V~~P--~d~~e~~~~l~~a~~----~~gp~~ir 469 (616)
T 3mos_A 442 TVFYP--SDGVATEKAVELAAN----TKGICFIR 469 (616)
T ss_dssp EEECC--CSHHHHHHHHHHHHT----CCSEEEEE
T ss_pred EEEec--CCHHHHHHHHHHHHh----cCCCEEEE
Confidence 66543 478889888887775 46898764
No 61
>2nxw_A Phenyl-3-pyruvate decarboxylase; thiamine pyrophosphate, asymmetric dimer of dimers, open ACT loops, lyase; HET: TPP; 1.50A {Azospirillum brasilense} PDB: 2q5j_A* 2q5l_A* 2q5o_A* 2q5q_A*
Probab=91.23 E-value=0.41 Score=49.04 Aligned_cols=107 Identities=21% Similarity=0.139 Sum_probs=63.3
Q ss_pred HHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccccc---cccCCcc-HHHHHhh
Q 017890 245 QAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNIS---EQFRSDG-IVVKGRA 320 (364)
Q Consensus 245 ~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~---~~~~~~~-ia~~a~a 320 (364)
+|.|.|.+. ++-.+++|..|=|+++ ..-++.-|..-++|+|+|+-+-......... .+....+ ....++.
T Consensus 74 ~A~GyAr~t---gkp~v~~~TsGpG~~N---~~~gv~~A~~~~vPll~itg~~~~~~~~~~~~~~~~~q~~d~q~~~~~~ 147 (565)
T 2nxw_A 74 AADAAARYS---STLGVAAVTYGAGAFN---MVNAVAGAYAEKSPVVVISGAPGTTEGNAGLLLHHQGRTLDTQFQVFKE 147 (565)
T ss_dssp HHHHHHHHH---TSCEEEEECTTHHHHT---THHHHHHHHHTTCCEEEEEEECCTTCC--CCCC-------CHHHHHHTT
T ss_pred HHHHHHHHh---CCCeEEEECCCCCHHH---HHHHHHHHHhhCCCEEEEeCCCChhhhccCcceeeeccchhhHHHHHHh
Confidence 466666543 4445566666777766 4566888888999999998774332211100 0001112 4566666
Q ss_pred cCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEE
Q 017890 321 YGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVR 359 (364)
Q Consensus 321 ~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~ 359 (364)
+--...++. +++++.+.+.+|+..+....+|+.|++-
T Consensus 148 ~~k~~~~v~--~~~~~~~~i~~A~~~A~~~~GPV~l~iP 184 (565)
T 2nxw_A 148 ITVAQARLD--DPAKAPAEIARVLGAARAQSRPVYLEIP 184 (565)
T ss_dssp SCSCEEECC--CTTTHHHHHHHHHHHHHHHTCCEEEEEE
T ss_pred hheEEEEeC--CHHHHHHHHHHHHHHHHhCCCCEEEECC
Confidence 665666664 4555555666666555555789999875
No 62
>4feg_A Pyruvate oxidase; carbanion, structure activity relationship, oxidation-reduct umpolung, thiamine diphosphate, reaction intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A*
Probab=91.06 E-value=0.39 Score=49.72 Aligned_cols=105 Identities=16% Similarity=0.063 Sum_probs=64.1
Q ss_pred HHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhcCeE
Q 017890 245 QAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIR 324 (364)
Q Consensus 245 ~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~ 324 (364)
+|.|.|.+ .++-.++++..|=|+++ ..-++..|..-++|+|+|+-.-........ .....|....++.+--.
T Consensus 65 aA~GyAr~---tg~~gv~~~TsGpG~~N---~~~gia~A~~~~vPvl~itG~~~~~~~~~~--~~Q~~d~~~~~~~~tk~ 136 (603)
T 4feg_A 65 AAAADAKL---TGKIGVCFGSAGPGGTH---LMNGLYDAREDHVPVLALIGQFGTTGMNMD--TFQEMNENPIYADVADY 136 (603)
T ss_dssp HHHHHHHH---HSSCEEEEECTTHHHHT---THHHHHHHHHTTCCEEEEEEECCTTTTTSC--CTTCCCCGGGGTTTCSE
T ss_pred HHHHHHHH---hCCceEEEecCCchHHH---HHHHHHHHHHcCCCEEEEecCCcccccCCC--ccccccHHHHhhhhceE
Confidence 46666544 34455666777888876 345688888899999999865432111110 11112445556666556
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEE
Q 017890 325 SIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVR 359 (364)
Q Consensus 325 ~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~ 359 (364)
..+|. +++++.+.+.+|+..|....||+.|++-
T Consensus 137 ~~~v~--~~~~~~~~i~~A~~~A~~~~GPV~l~iP 169 (603)
T 4feg_A 137 NVTAV--NAATLPHVIDEAIRRAYAHQGVAVVQIP 169 (603)
T ss_dssp EEECC--CSTTHHHHHHHHHHHHHHHTSEEEEEEE
T ss_pred EEEcC--CHHHHHHHHHHHHHHHhcCCCCEEEEeC
Confidence 66664 4445666666666655555799999874
No 63
>2e6k_A Transketolase; structural genomics, NPPSFA, national project protein structural and functional analyses; 2.09A {Thermus thermophilus}
Probab=90.18 E-value=1.4 Score=46.19 Aligned_cols=101 Identities=16% Similarity=0.095 Sum_probs=66.0
Q ss_pred hhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCccc--ccccccccCCccHHHHHhh
Q 017890 243 LPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAI--STNISEQFRSDGIVVKGRA 320 (364)
Q Consensus 243 lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ai--s~~~~~~~~~~~ia~~a~a 320 (364)
+++|.|+|+. +.-++++..+.=.+. -.++++..++..++||++++.+.+++. ..+++ .+.++++-...-
T Consensus 410 ~~~a~GlA~~----Gg~~P~~~t~~~F~~---~~~~air~~a~~~lpvv~~~t~~g~g~G~dG~tH--q~~edla~lr~i 480 (651)
T 2e6k_A 410 GAILNGLNLH----GGYRAYGGTFLVFSD---YMRPAIRLAALMGVPTVFVFTHDSIALGEDGPTH--QPVEHLMSLRAM 480 (651)
T ss_dssp HHHHHHHHHH----SSCEEEEEEEGGGGG---GSHHHHHHHHHHTCCCEEEEECCSGGGCTTCTTT--CCSSHHHHHHTS
T ss_pred HHHHHHHHHc----CCCEEEEEeHHHHHH---HHHHHHHHHHhcCCCEEEEEECCccccCCCcCcc--ccHHHHHHhcCC
Confidence 3456666554 323566665533221 246778889999999999998888654 44554 234555544434
Q ss_pred cCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEE
Q 017890 321 YGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVE 357 (364)
Q Consensus 321 ~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIe 357 (364)
.|+.++.- -|..+++.+++.|++. .++|++|-
T Consensus 481 P~l~V~~P--ad~~E~~~~l~~A~~~---~~~Pv~i~ 512 (651)
T 2e6k_A 481 PNLFVIRP--ADAYETFYAWLVALRR---KEGPTALV 512 (651)
T ss_dssp TTCEEECC--SSHHHHHHHHHHHHHC---CSSCEEEE
T ss_pred CCcEEEec--CCHHHHHHHHHHHHHc---CCCCEEEE
Confidence 58877754 3789999999998872 26899874
No 64
>2r8o_A Transketolase 1, TK 1; reaction intermediate, calcium, metal-binding, thiamine pyrophosphate, transferase; HET: T5X; 1.47A {Escherichia coli K12} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2r5n_A* 2r8p_A* 1qgd_A*
Probab=90.10 E-value=1.7 Score=45.82 Aligned_cols=101 Identities=12% Similarity=0.008 Sum_probs=65.9
Q ss_pred hhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCccc--ccccccccCCccHHHHHhh
Q 017890 243 LPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAI--STNISEQFRSDGIVVKGRA 320 (364)
Q Consensus 243 lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ai--s~~~~~~~~~~~ia~~a~a 320 (364)
+++|.|+|+. +.-++++..+...+. -.++++..++..++||++++-..+++. .++++ .+.++++-...-
T Consensus 415 v~~a~GlA~~----gG~~P~~~tf~~F~~---~~~~~ir~~a~~~lpvv~~~t~~g~~~G~dG~tH--q~~edla~lr~i 485 (669)
T 2r8o_A 415 TAIANGISLH----GGFLPYTSTFLMFVE---YARNAVRMAALMKQRQVMVYTHDSIGLGEDGPTH--QPVEQVASLRVT 485 (669)
T ss_dssp HHHHHHHHHH----SSCEEEEEEEGGGGG---TTHHHHHHHHHTTCCCEEEEECCSGGGCTTCTTT--CCSSHHHHHHTS
T ss_pred HHHHHHHHHc----CCCeEEEeehHHHHH---HHHHHHHHHHhcCCCEEEEEeCCCcCcCCCCCcc--CCHHHHHHhcCC
Confidence 3455565543 333456666655443 246778889999999999998877653 44554 234455544444
Q ss_pred cCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEE
Q 017890 321 YGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVE 357 (364)
Q Consensus 321 ~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIe 357 (364)
.|+.++.- -|..++..+++.|++. .++|++|-
T Consensus 486 P~l~V~~P--ad~~E~~~~l~~a~~~---~~~Pv~i~ 517 (669)
T 2r8o_A 486 PNMSTWRP--CDQVESAVAWKYGVER---QDGPTALI 517 (669)
T ss_dssp TTCEEECC--SSHHHHHHHHHHHHHC---SSSCEEEE
T ss_pred CCCEEEec--CCHHHHHHHHHHHHHh---CCCcEEEE
Confidence 57776653 3788999999998862 36899874
No 65
>2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate synthase; transferase, metal-binding; HET: TPP; 2.35A {Bacillus subtilis}
Probab=89.59 E-value=0.54 Score=48.57 Aligned_cols=107 Identities=15% Similarity=0.110 Sum_probs=65.0
Q ss_pred HHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhcCeE
Q 017890 245 QAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIR 324 (364)
Q Consensus 245 ~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~ 324 (364)
+|.|.|.+ .++-.+++|..|=|+++ ..-++..|..-++|+|+|+-+-..........| ..|....++.+--.
T Consensus 84 aA~GyAr~---tgkpgv~~~TsGpG~~N---~~~gia~A~~~~vPlv~ItG~~~~~~~g~~~~Q--~~d~~~~~~~~tk~ 155 (604)
T 2x7j_A 84 FALGLAKA---KQRPVLLICTSGTAAAN---FYPAVVEAHYSRVPIIVLTADRPHELREVGAPQ--AINQHFLFGNFVKF 155 (604)
T ss_dssp HHHHHHHH---HTSCEEEEECSSHHHHT---THHHHHHHHHHTCCEEEEEEECCGGGSSSCCTT--CCCCTTTTGGGSSC
T ss_pred HHHHHHHh---hCCCEEEEECChhHHHH---HHHHHHHHhhcCCCEEEEeCCCCHHHhCCCCCC--cCcHHHHhhhheee
Confidence 46666654 34455677777877776 356688888889999999876543221111111 12344445555445
Q ss_pred EEEEe-CCCH----HHHHHHHHHHHHHhhcC-CCcEEEEEE
Q 017890 325 SIRVD-GNDA----LAVYTAVQAAREMAISE-KRPVLVEVR 359 (364)
Q Consensus 325 ~~~VD-GnD~----~av~~a~~~A~~~ar~~-~~P~LIea~ 359 (364)
..+|. ..+. ..+.+.+++|+..|..+ .||+.|++-
T Consensus 156 ~~~v~~~~~~~~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP 196 (604)
T 2x7j_A 156 FTDSALPEESPQMLRYIRTLASRAAGEAQKRPMGPVHVNVP 196 (604)
T ss_dssp EEECCCCCCSHHHHHHHHHHHHHHHHHHHSSSCCEEEEEEE
T ss_pred eeecCCCcccchhHHHHHHHHHHHHHHhhCCCCCcEEEEcc
Confidence 66664 2220 12777788888777764 589999875
No 66
>2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP), thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE; 2.70A {Escherichia coli}
Probab=89.33 E-value=1.4 Score=45.62 Aligned_cols=106 Identities=22% Similarity=0.222 Sum_probs=69.8
Q ss_pred HHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhcCeE
Q 017890 245 QAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIR 324 (364)
Q Consensus 245 ~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~ 324 (364)
+|.|.|.+. .++-.++++..|=|+++ ..-++..|..-++|+|+|+-+-........ .....|....++.+--.
T Consensus 80 ~A~GyAr~t--gg~~~v~~~TsGpG~~N---~~~~l~~A~~~~vPlvvItg~~p~~~~~~~--~~Q~~d~~~~~~~~tk~ 152 (616)
T 2pan_A 80 MAEGYTRAT--AGNIGVCLGTSGPAGTD---MITALYSASADSIPILCITGQAPRARLHKE--DFQAVDIEAIAKPVSKM 152 (616)
T ss_dssp HHHHHHHHS--TTCCEEEEECSTHHHHT---SHHHHHHHHHTTCCEEEEEEECCGGGTTTT--CTTCCCHHHHHGGGSSE
T ss_pred HHHHHHHhc--CCCceEEEeCCCchHHH---HHHHHHHHHhcCCCEEEEecCCcccccCcc--cccccCHHHHHHHHHHh
Confidence 466665542 02334455666777665 345688888889999999876643322111 11224566777777666
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHhhcC-CCcEEEEEE
Q 017890 325 SIRVDGNDALAVYTAVQAAREMAISE-KRPVLVEVR 359 (364)
Q Consensus 325 ~~~VDGnD~~av~~a~~~A~~~ar~~-~~P~LIea~ 359 (364)
..++. +++++...+++|+..+..+ .||+.|++-
T Consensus 153 ~~~v~--~~~~i~~~l~~A~~~A~~~r~GPV~l~iP 186 (616)
T 2pan_A 153 AVTVR--EAALVPRVLQQAFHLMRSGRPGPVLVDLP 186 (616)
T ss_dssp EEECC--SGGGHHHHHHHHHHHHHSSSCCCEEEEEE
T ss_pred hcccC--CHHHHHHHHHHHHHHHhcCCCceEEEEcc
Confidence 77774 6778889999999888765 489999874
No 67
>2o1s_A 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thiamine, isoprenoid, transferase; HET: TDP; 2.40A {Escherichia coli}
Probab=89.10 E-value=1.4 Score=45.91 Aligned_cols=101 Identities=14% Similarity=0.088 Sum_probs=66.1
Q ss_pred hhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcc-cccccccccCCccHHHHHhhc
Q 017890 243 LPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWA-ISTNISEQFRSDGIVVKGRAY 321 (364)
Q Consensus 243 lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~a-is~~~~~~~~~~~ia~~a~a~ 321 (364)
+++|+|+|++ .-++++..+++... . .+...++.++..++||++++.+.++. -..+++.+ ..+++-...--
T Consensus 374 ~~~a~G~A~~-----G~rp~~~~~~~F~~-~-a~dqi~~~~a~~~~pvv~~~~~~g~~g~~G~tH~~--~~d~~~~~~iP 444 (621)
T 2o1s_A 374 VTFAAGLAIG-----GYKPIVAIYSTFLQ-R-AYDQVLHDVAIQKLPVLFAIDRAGIVGADGQTHQG--AFDLSYLRCIP 444 (621)
T ss_dssp HHHHHHHHHT-----TCEEEEEEETTGGG-G-GHHHHHHTTTTTTCCCEEEEESCBCCCTTCGGGCB--CSHHHHTTTST
T ss_pred HHHHHHHHHC-----CCEEEEEehHhHHH-H-HHHHHHHHHHhcCCCEEEEEECCccCCCCCCccCc--hHHHHHHhcCC
Confidence 4456666553 24677788888753 2 23334677888999999999887762 23444433 24444433334
Q ss_pred CeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEE
Q 017890 322 GIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVE 357 (364)
Q Consensus 322 G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIe 357 (364)
|+.++.-- |+.+++..++.|++. .++|++|-
T Consensus 445 ~l~v~~P~--d~~e~~~~l~~a~~~---~~~Pv~i~ 475 (621)
T 2o1s_A 445 EMVIMTPS--DENECRQMLYTGYHY---NDGPSAVR 475 (621)
T ss_dssp TCEEECCS--SHHHHHHHHHHHHHC---CSSCEEEE
T ss_pred CCEEEecC--CHHHHHHHHHHHHHc---CCCCEEEE
Confidence 88887643 789999999998873 36899874
No 68
>1itz_A Transketolase; calvin cycle, cofactor, thiamine pyrophosphate, plant, transferase; HET: TPP; 2.30A {Zea mays} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=88.86 E-value=2.1 Score=45.17 Aligned_cols=89 Identities=17% Similarity=0.081 Sum_probs=59.9
Q ss_pred CCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCccc--ccccccccCCccHHHHHhhcCeEEEEEeCCCHHHH
Q 017890 259 DACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAI--STNISEQFRSDGIVVKGRAYGIRSIRVDGNDALAV 336 (364)
Q Consensus 259 ~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ai--s~~~~~~~~~~~ia~~a~a~G~~~~~VDGnD~~av 336 (364)
-++++.++...+. -.++++..++..++||++++-..+++. .++++ .+..+++-...--|+.++.= -|..++
T Consensus 440 ~~P~~~t~~~F~~---~~~~~ir~~a~~~lpvv~~~t~~g~g~G~dG~tH--q~~edla~lr~iP~l~V~~P--ad~~e~ 512 (675)
T 1itz_A 440 FVPYCATFFVFTD---YMRGAMRISALSEAGVIYVMTHDSIGLGEDGPTH--QPIEHLVSFRAMPNILMLRP--ADGNET 512 (675)
T ss_dssp CEEEEEEEGGGHH---HHHHHHHHHHHHTCCCEEEEECCSGGGCTTCTTT--CCSSHHHHHHSSSSCEEECC--CSHHHH
T ss_pred CEEEEEEHHHHHH---HHHHHHHHHHhcCCCEEEEEECCccccCCCCCCc--CcHHHHHHhccCCCeEEEEC--CCHHHH
Confidence 4566666655443 357788889999999999997776653 44554 23445554433346666543 478899
Q ss_pred HHHHHHHHHHhhcCCCcEEEE
Q 017890 337 YTAVQAAREMAISEKRPVLVE 357 (364)
Q Consensus 337 ~~a~~~A~~~ar~~~~P~LIe 357 (364)
..+++.|++. .++|++|-
T Consensus 513 ~~~l~~a~~~---~~~Pv~i~ 530 (675)
T 1itz_A 513 AGAYKVAVLN---RKRPSILA 530 (675)
T ss_dssp HHHHHHHHHC---TTSCEEEE
T ss_pred HHHHHHHHHh---CCCcEEEE
Confidence 9999988862 36899884
No 69
>1gpu_A Transketolase; transferase(ketone residues); HET: THD; 1.86A {Saccharomyces cerevisiae} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 1ngs_A* 1trk_A* 1ay0_A* 1tkb_A* 1tka_A* 1tkc_A*
Probab=88.20 E-value=1.8 Score=45.63 Aligned_cols=100 Identities=12% Similarity=0.077 Sum_probs=64.3
Q ss_pred hHHHHHHHHhhhccCCC-eEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCccc--ccccccccCCccHHHHHhh
Q 017890 244 PQAVGVAYSLKMEKKDA-CAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAI--STNISEQFRSDGIVVKGRA 320 (364)
Q Consensus 244 p~AvG~A~A~k~~~~~~-~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ai--s~~~~~~~~~~~ia~~a~a 320 (364)
++|+|+|+. +.-+ +++..+.+-+. -.++++..++..++||++++-..+++. .++++ .+.++++-...-
T Consensus 423 g~a~GlA~~----Gg~~~P~~~~f~~F~~---~~~~air~~a~~~lpvv~v~t~~g~g~G~dG~tH--q~~edla~lr~i 493 (680)
T 1gpu_A 423 AIMNGISAF----GANYKPYGGTFLNFVS---YAAGAVRLSALSGHPVIWVATHDSIGVGEDGPTH--QPIETLAHFRSL 493 (680)
T ss_dssp HHHHHHHHH----CTTCEEEEEEEHHHHG---GGHHHHHHHHHHTCCCEEEEECCSGGGCTTCTTT--CCSSHHHHHHTS
T ss_pred HHHHHHHhc----CCCceEEEeehHHHHH---HHHHHHHHHHhcCCCEEEEEeCCccccCCCCCcc--CCHHHHHHhcCC
Confidence 456665543 3235 55555533322 246778889999999999997777653 45555 234555544444
Q ss_pred cCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEE
Q 017890 321 YGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVE 357 (364)
Q Consensus 321 ~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIe 357 (364)
-|+.++.= -|..++..+++.|++. .++|++|-
T Consensus 494 P~l~V~~P--ad~~e~~~~l~~A~~~---~~~Pv~i~ 525 (680)
T 1gpu_A 494 PNIQVWRP--ADGNEVSAAYKNSLES---KHTPSIIA 525 (680)
T ss_dssp SSCEEECC--CSHHHHHHHHHHHHHC---SSCCEEEE
T ss_pred CCCEEEec--CCHHHHHHHHHHHHHh---CCCcEEEE
Confidence 57766643 3788999999998862 36899874
No 70
>3kom_A Transketolase; rossmann fold, csgid, transferase, structural genomics, center for structural genomics of infectious DISE; HET: MSE; 1.60A {Francisella tularensis subsp}
Probab=88.07 E-value=2.1 Score=45.15 Aligned_cols=101 Identities=13% Similarity=0.033 Sum_probs=66.0
Q ss_pred hhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcc--cccccccccCCccHHHHHhh
Q 017890 243 LPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWA--ISTNISEQFRSDGIVVKGRA 320 (364)
Q Consensus 243 lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~a--is~~~~~~~~~~~ia~~a~a 320 (364)
+++|+|+|+. +.-++++..+.+-.. ...+++..++..++||+++....+++ ...+++ .+..+++-...-
T Consensus 416 v~~a~GlA~~----gG~~P~~~tf~~F~~---~~~~~ir~~a~~~lpvv~~~t~~g~g~G~dG~TH--q~~ed~a~lr~i 486 (663)
T 3kom_A 416 AAIMNGLSLY----GGIKPYGGTFLVFSD---YSRNAIRMSALMKQPVVHVMSHDSIGLGEDGPTH--QPIEHVPSLRLI 486 (663)
T ss_dssp HHHHHHHHHH----SSCEEEEEEEGGGHH---HHHHHHHHHHHTTCCCEEEEECCSGGGCTTCTTT--CCSSHHHHHHTS
T ss_pred HHHHHHHHHc----CCCEEEEEehHHHHH---HHHHHHHHHHhcCCCEEEEEeCCccccCCCCCCc--CCHHHHHHHhcC
Confidence 4556666653 334567776665542 24567888899999999998777764 345554 233455544444
Q ss_pred cCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEE
Q 017890 321 YGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVE 357 (364)
Q Consensus 321 ~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIe 357 (364)
-|+.++.- -|..++..+++.|++ ..++|++|-
T Consensus 487 Pnl~V~~P--ad~~e~~~~l~~A~~---~~~~Pv~ir 518 (663)
T 3kom_A 487 PNLSVWRP--ADTIETMIAWKEAVK---SKDTPSVMV 518 (663)
T ss_dssp TTCEEECC--CSHHHHHHHHHHHHH---CSSCCEEEE
T ss_pred CCcEEEee--CCHHHHHHHHHHHHH---hCCCCEEEE
Confidence 57766653 378889999988886 247899873
No 71
>3l84_A Transketolase; TKT, structural genomics, center for structur genomics of infectious diseases, csgid, transferase; HET: MSE; 1.36A {Campylobacter jejuni} PDB: 3m6l_A* 3m34_A* 3m7i_A*
Probab=88.00 E-value=2.4 Score=44.45 Aligned_cols=100 Identities=14% Similarity=-0.050 Sum_probs=66.0
Q ss_pred hhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcc--cccccccccCCccHHHHHhh
Q 017890 243 LPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWA--ISTNISEQFRSDGIVVKGRA 320 (364)
Q Consensus 243 lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~a--is~~~~~~~~~~~ia~~a~a 320 (364)
+++|.|+|+. +.-++++..+.+-.. ...+.+..++..++||+++....+++ ..++++ .+..+++-...-
T Consensus 395 v~~a~GlA~~----gG~~P~~~~f~~F~~---~~~~~ir~~a~~~~pv~~~~t~~g~g~G~dG~TH--q~~ed~a~lr~i 465 (632)
T 3l84_A 395 AAINNAFARY----GIFLPFSATFFIFSE---YLKPAARIAALMKIKHFFIFTHDSIGVGEDGPTH--QPIEQLSTFRAM 465 (632)
T ss_dssp HHHHHHHHHH----SSCEEEEEEEGGGHH---HHHHHHHHHHHHTCCCEEEEECCSGGGCTTCGGG--SCSSHHHHHHHS
T ss_pred HHHHHHHHHc----CCCEEEEEecHHHHH---HHHHHHHHHhccCCCEEEEEECCCcCCCCCCCCC--CCHhHHHHHhcC
Confidence 4556666654 234566666654432 34567888889999999998777764 345554 234455544444
Q ss_pred cCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEE
Q 017890 321 YGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVE 357 (364)
Q Consensus 321 ~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIe 357 (364)
-|+.++.- -|..++..+++.|++ .++|++|-
T Consensus 466 P~l~V~~P--~d~~e~~~~l~~A~~----~~~Pv~ir 496 (632)
T 3l84_A 466 PNFLTFRP--ADGVENVKAWQIALN----ADIPSAFV 496 (632)
T ss_dssp SSCEEECC--SSHHHHHHHHHHHHH----CSSCEEEE
T ss_pred CCCEEEec--CCHHHHHHHHHHHHh----CCCCEEEE
Confidence 57777653 378899999998886 57899874
No 72
>1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon, mandelate catabolism, T thiazolone diphosphate, inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A* 1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A* 2v3w_A* 1yno_A* 3f6b_X* 3f6e_X*
Probab=87.53 E-value=0.76 Score=46.48 Aligned_cols=107 Identities=21% Similarity=0.066 Sum_probs=65.3
Q ss_pred hHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhcCe
Q 017890 244 PQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGI 323 (364)
Q Consensus 244 p~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~ 323 (364)
-+|.|.|.+. ++..++++..|=|.++ ..-++.-|...++|+|+|+-+-..........|. ..|....++.+--
T Consensus 52 ~~A~Gyar~t---g~~~v~~~tsGpG~~N---~~~~l~~A~~~~~Pll~itg~~~~~~~~~~~~q~-~~d~~~~~~~~~k 124 (528)
T 1q6z_A 52 GIADGYAQAS---RKPAFINLHSAAGTGN---AMGALSNAWNSHSPLIVTAGQQTRAMIGVEALLT-NVDAANLPRPLVK 124 (528)
T ss_dssp HHHHHHHHHH---TSCEEEEEEHHHHHHH---THHHHHHHHHTTCCEEEEEEECCHHHHTTTCTTC-CTTGGGSSTTSCS
T ss_pred HHHHHHHHHh---CCCEEEEEcCChHHHH---HHHHHHHHhhcCCCEEEEeCCCcccccCCCcccc-cccHHHHHHHhhH
Confidence 3566666543 4445666667777775 3456778888899999998765432111111111 0144444554444
Q ss_pred EEEEEeCCCHHHHHHHHHHHHHHhhcCC-CcEEEEEE
Q 017890 324 RSIRVDGNDALAVYTAVQAAREMAISEK-RPVLVEVR 359 (364)
Q Consensus 324 ~~~~VDGnD~~av~~a~~~A~~~ar~~~-~P~LIea~ 359 (364)
...++. +++++...+.+|+..+..+. ||+.|++-
T Consensus 125 ~~~~v~--~~~~~~~~i~~A~~~a~~~~~GPV~l~iP 159 (528)
T 1q6z_A 125 WSYEPA--SAAEVPHAMSRAIHMASMAPQGPVYLSVP 159 (528)
T ss_dssp CEECCS--SGGGHHHHHHHHHHHHHSSSCCCEEEEEE
T ss_pred hhhcCC--CHHHHHHHHHHHHHHHhcCCCCcEEEEec
Confidence 455554 56677778888887777665 69999874
No 73
>2ozl_B PDHE1-B, pyruvate dehydrogenase E1 component subunit beta; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1ni4_B* 3exe_B* 3exf_B* 3exg_B 3exh_B* 3exi_B
Probab=86.76 E-value=1.9 Score=41.59 Aligned_cols=98 Identities=19% Similarity=0.120 Sum_probs=59.0
Q ss_pred hhHHHHHHHHhhhccCCCeEEE-EeCCCccccccHHHHHHHH-H--------HcCCCEEEEEEcCCc-ccccccccccCC
Q 017890 243 LPQAVGVAYSLKMEKKDACAVA-YTGDGGTSEGDFHAALNFA-A--------VMEAPVVFICRNNGW-AISTNISEQFRS 311 (364)
Q Consensus 243 lp~AvG~A~A~k~~~~~~~vv~-~~GDGa~~eG~~~EALn~A-a--------~~~LPvIfVV~NNg~-ais~~~~~~~~~ 311 (364)
+++|.|+|++ + -++++. .+++... ..++.+... + ..++||++++.+ ++ +-..+++.+. .
T Consensus 75 v~~a~G~A~~----G-~rp~~~~~f~~F~~---~a~dqi~~~~a~~~y~~~g~~~~pvv~~~~~-G~~g~~G~tHs~~-~ 144 (341)
T 2ozl_B 75 AGIAVGAAMA----G-LRPICEFMTFNFSM---QAIDQVINSAAKTYYMSGGLQPVPIVFRGPN-GASAGVAAQHSQC-F 144 (341)
T ss_dssp HHHHHHHHHT----T-CEEEEECSSGGGGG---GGHHHHHTTTTTHHHHTTSSCCCCCEEEEEC-SCCSSCCGGGCCC-C
T ss_pred HHHHHHHHHC----C-CEEEEEeccHHHHH---HHHHHHHHHHHHHHhhccccCCCCEEEEEcC-cCCCCCCcchhhH-H
Confidence 4556666654 2 344554 3888872 244555543 3 278999999986 54 2244444221 1
Q ss_pred ccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEE
Q 017890 312 DGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEV 358 (364)
Q Consensus 312 ~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea 358 (364)
+ +-...--|+.++.- .|+.+.+..++.|++ .++|++|-.
T Consensus 145 -e-a~l~~iP~l~V~~P--sd~~e~~~~l~~a~~----~~~Pv~i~~ 183 (341)
T 2ozl_B 145 -A-AWYGHCPGLKVVSP--WNSEDAKGLIKSAIR----DNNPVVVLE 183 (341)
T ss_dssp -H-HHHHTSTTCEEECC--CSHHHHHHHHHHHHH----SSSCEEEEE
T ss_pred -H-HHhccCCCCEEEEe--CCHHHHHHHHHHHHh----cCCCEEEEE
Confidence 2 22222348877754 389999999999886 368998743
No 74
>1r9j_A Transketolase; domains, EACH of the alpha/beta type, thiamine diphosphate binding domain, transferase; HET: TPP; 2.22A {Leishmania mexicana mexicana} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=86.73 E-value=3.8 Score=43.19 Aligned_cols=100 Identities=11% Similarity=0.001 Sum_probs=64.4
Q ss_pred hHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCccc--ccccccccCCccHHHHHhhc
Q 017890 244 PQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAI--STNISEQFRSDGIVVKGRAY 321 (364)
Q Consensus 244 p~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ai--s~~~~~~~~~~~ia~~a~a~ 321 (364)
++|.|+|+. +.-++++.++..-+. -..+++..++..++||++++...+++. .++++ .+.++++-...--
T Consensus 416 ~~a~GlA~~----GG~~P~~~~~~~F~~---~~~~~ir~~a~~~~pvv~~~t~~g~g~G~dG~tH--q~~edla~lr~iP 486 (673)
T 1r9j_A 416 AILNGLDAH----DGIIPFGGTFLNFIG---YALGAVRLAAISHHRVIYVATHDSIGVGEDGPTH--QPVELVAALRAMP 486 (673)
T ss_dssp HHHHHHHHH----SSCEEEEEEEGGGGG---GGHHHHHHHHHHTCCCEEEEECCSGGGCTTCTTT--CCSSHHHHHHHST
T ss_pred HHHHHHHhc----CCCEEEEEehHHHHH---HHHHHHHHHHhcCCCEEEEEECCccCcCCCCccc--CCHHHHHHHcCCC
Confidence 355565543 323566666544332 345678889999999999987777643 45555 2345555444445
Q ss_pred CeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEE
Q 017890 322 GIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVE 357 (364)
Q Consensus 322 G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIe 357 (364)
|+.++.= -|..++..+++.|++. .++|++|-
T Consensus 487 ~l~V~~P--ad~~e~~~~l~~a~~~---~~~Pv~i~ 517 (673)
T 1r9j_A 487 NLQVIRP--SDQTETSGAWAVALSS---IHTPTVLC 517 (673)
T ss_dssp TCEEECC--SSHHHHHHHHHHHHHC---TTCCEEEE
T ss_pred CCEEEeC--CCHHHHHHHHHHHHHh---CCCeEEEE
Confidence 7766643 4788999999988862 36899874
No 75
>2o1x_A 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, isoprenoid, DXS, transferase; HET: TDP; 2.90A {Deinococcus radiodurans}
Probab=86.65 E-value=1 Score=46.94 Aligned_cols=100 Identities=16% Similarity=0.106 Sum_probs=64.2
Q ss_pred hhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcc-cccccccccCCccHHHHHhhc
Q 017890 243 LPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWA-ISTNISEQFRSDGIVVKGRAY 321 (364)
Q Consensus 243 lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~a-is~~~~~~~~~~~ia~~a~a~ 321 (364)
+++|+|+|++ .-++++.++.+... . .+...++.++..++||++++.+.+.. -..+++.+ ..+++-...--
T Consensus 377 ~~~a~G~A~~-----G~rp~~~~~~~F~~-~-a~dqi~~~~a~~~~pvv~~~~~~g~~g~dG~tH~~--~~d~a~~r~iP 447 (629)
T 2o1x_A 377 VTTAAGMALQ-----GMRPVVAIYSTFLQ-R-AYDQVLHDVAIEHLNVTFCIDRAGIVGADGATHNG--VFDLSFLRSIP 447 (629)
T ss_dssp HHHHHHHHHT-----TCEEEEEEEHHHHG-G-GHHHHHHTTTTTTCCCEEEEESBBCCCTTCTTTCB--CSHHHHTTTST
T ss_pred HHHHHHHHHc-----CCEEEEEecHHHHH-H-HHHHHHHHHhhcCCCEEEEEECCccCCCCCcccCc--cHHHHHHHccC
Confidence 4456666654 24567777776542 1 23334677888999999999887762 23444333 24444333334
Q ss_pred CeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEE
Q 017890 322 GIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVE 357 (364)
Q Consensus 322 G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIe 357 (364)
|+.++.- -|+.+++..++.|++. ++|++|-
T Consensus 448 ~l~v~~P--~d~~e~~~~~~~a~~~----~~Pv~i~ 477 (629)
T 2o1x_A 448 GVRIGLP--KDAAELRGMLKYAQTH----DGPFAIR 477 (629)
T ss_dssp TCEEECC--SSHHHHHHHHHHHHHS----SSCEEEE
T ss_pred CcEEEec--CCHHHHHHHHHHHHhC----CCCEEEE
Confidence 8877754 3789999999999873 6899874
No 76
>2vbf_A Branched-chain alpha-ketoacid decarboxylase; KDCA, flavoprotein, THDP-dependent enzymes, thiamine pyrophosphate, lyase; HET: TPP; 1.60A {Lactococcus lactis} PDB: 2vbg_A*
Probab=86.41 E-value=1.4 Score=44.90 Aligned_cols=106 Identities=15% Similarity=0.075 Sum_probs=63.3
Q ss_pred hHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCccccccc---cc--cc-CCccHHHH
Q 017890 244 PQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNI---SE--QF-RSDGIVVK 317 (364)
Q Consensus 244 p~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~---~~--~~-~~~~ia~~ 317 (364)
-+|.|.|.+ .+ -.++++..|=|+++ ..-++.-|..-++|+|+|+-+......... .. +. ...+....
T Consensus 77 ~~A~GyAr~---tG-~~v~~~tsGpG~~N---~~~gi~~A~~~~vPlv~itg~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (570)
T 2vbf_A 77 YMADGYART---KK-AAAFLTTFGVGELS---AINGLAGSYAENLPVVEIVGSPTSKVQNDGKFVHHTLADGDFKHFMKM 149 (570)
T ss_dssp HHHHHHHHH---HS-CEEEEEETTHHHHH---HHHHHHHHHHTTCCEEEEEEECCHHHHHHTCCCTTSCSSSCCCHHHHH
T ss_pred HHHHHHHHH---hC-CeEEEEcCCCCHHH---HHHHHHHHhhhCCCEEEEeCCCCHHHhhccccceeeccccchHHHHHH
Confidence 356676654 34 44666666777665 456788888889999999976553221100 00 00 11224556
Q ss_pred HhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEE
Q 017890 318 GRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVR 359 (364)
Q Consensus 318 a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~ 359 (364)
++.+--...+|. + +++...+++|+..|....+|+.|++-
T Consensus 150 ~~~~tk~~~~v~--~-~~~~~~l~~A~~~A~~~~GPV~l~iP 188 (570)
T 2vbf_A 150 HEPVTAARTLLT--A-ENATYEIDRVLSQLLKERKPVYINLP 188 (570)
T ss_dssp TGGGCSEEEECC--T-TTHHHHHHHHHHHHHHHCCCEEEEEE
T ss_pred hhhhEEEEEEEC--c-ccHHHHHHHHHHHHhhCCCCEEEEcc
Confidence 666766677775 3 44555555555555545689999874
No 77
>3lq1_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate synthase; menaquinone biosynthesis, sephchc synthase, structural genomics; 2.60A {Listeria monocytogenes}
Probab=86.38 E-value=2.7 Score=43.11 Aligned_cols=107 Identities=11% Similarity=0.127 Sum_probs=63.7
Q ss_pred HHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhcCeE
Q 017890 245 QAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIR 324 (364)
Q Consensus 245 ~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~ 324 (364)
+|.|.|.+ .++-.+++|..|=|+++ ..-++..|..-++|+|+|.-+-....... ......|....++.+--.
T Consensus 64 aAdGyAr~---tG~pgv~~~TsGpG~~N---~~~gia~A~~d~vPll~itG~~p~~~~g~--~~~Qe~d~~~~~~~~tk~ 135 (578)
T 3lq1_A 64 FALGLAKA---SKRPVVLLCTSGTAAAN---YFPAVAEANLSQIPLIVLTADRPHELRNV--GAPQAMDQLHLYGSHVKD 135 (578)
T ss_dssp HHHHHHHH---HCCCEEEEECSSHHHHT---THHHHHHHHHTTCCEEEEEEECCGGGTTS--SCTTCCCCTTTTGGGSSE
T ss_pred HHHHHHHh---hCCCEEEEECCchhhhh---hhHHHHHHHhcCCCeEEEeCCCCHHhhcC--CCCCCcCHhhHHhhheee
Confidence 46666654 35556677777888876 34568888899999999986543211111 111112344445555444
Q ss_pred EEEEe-CCCHHH----HHHHHHHHHHHhhcC-CCcEEEEEE
Q 017890 325 SIRVD-GNDALA----VYTAVQAAREMAISE-KRPVLVEVR 359 (364)
Q Consensus 325 ~~~VD-GnD~~a----v~~a~~~A~~~ar~~-~~P~LIea~ 359 (364)
..+|. ..++.+ +..++++|+..|..+ .||+.|++-
T Consensus 136 ~~~v~~~~~~~~~~~~i~~~l~~A~~~A~~gr~GPV~l~iP 176 (578)
T 3lq1_A 136 FTDMALPENSEEMLRYAKWHGSRAVDIAMKTPRGPVHLNFP 176 (578)
T ss_dssp EEECCCCCCSHHHHHHHHHHHHHHHHHHHSSSCCCEEEEEE
T ss_pred EeecCCCCCchHHHHHHHHHHHHHHHHhhCCCCCcEEEECc
Confidence 55553 344332 445677777776665 589999875
No 78
>3m49_A Transketolase; alpha-beta-alpha sandwich, csgid, transferase, structural genomics, center for structural genomics of infectious diseases; HET: MSE TDP PG5 TRS BTB; 2.00A {Bacillus anthracis} PDB: 3hyl_A*
Probab=85.83 E-value=4.2 Score=43.12 Aligned_cols=101 Identities=17% Similarity=0.108 Sum_probs=63.6
Q ss_pred hhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcc--cccccccccCCccHHHHHhh
Q 017890 243 LPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWA--ISTNISEQFRSDGIVVKGRA 320 (364)
Q Consensus 243 lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~a--is~~~~~~~~~~~ia~~a~a 320 (364)
+++|.|+|+. +.-++++..+.--+. -...++..++..++||+|++...+++ ...+++. +..+++-...-
T Consensus 440 v~~A~GlA~~----gG~~P~~~tf~~Fs~---f~~~air~~al~~lpVv~v~~~~gigvG~dG~THq--~ied~a~lr~i 510 (690)
T 3m49_A 440 GAAMNGIALH----GGLKTYGGTFFVFSD---YLRPAIRLAALMQLPVTYVFTHDSIAVGEDGPTHE--PIEQLAALRAM 510 (690)
T ss_dssp HHHHHHHHHH----SSCEEEEEEEGGGGG---GGHHHHHHHHHHTCCCEEEEECCSGGGCTTCGGGC--CSSHHHHHHTS
T ss_pred HHHHHHHHHc----CCCEEEEEecHHHHH---HHHHHHHHHHhcCCCcEEEEECCCcCCCCCCCccC--CHHHHHHHhcC
Confidence 4556666654 223455554422221 12446778899999999999988764 4455542 34455544444
Q ss_pred cCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEE
Q 017890 321 YGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVE 357 (364)
Q Consensus 321 ~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIe 357 (364)
-|+.+++- -|..++..+++.|++. .++|++|-
T Consensus 511 Pnl~V~~P--ad~~E~~~~l~~Ai~~---~~~Pv~ir 542 (690)
T 3m49_A 511 PNVSVIRP--ADGNESVAAWRLALES---TNKPTALV 542 (690)
T ss_dssp TTCEEECC--SSHHHHHHHHHHHHHC---SSSCEEEE
T ss_pred CCCEEEee--CCHHHHHHHHHHHHHc---CCCCEEEE
Confidence 57877653 3788999999988862 36899874
No 79
>1qs0_B 2-oxoisovalerate dehydrogenase beta-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.7 c.48.1.2 PDB: 2bp7_B
Probab=85.41 E-value=1.9 Score=41.34 Aligned_cols=99 Identities=16% Similarity=0.087 Sum_probs=60.9
Q ss_pred cchhHHHHHHHHhhhccCCCeEEEE-eCCCccccccHHHHHH-HHHH--------cCCCEEEEEEcCCcccccccccccC
Q 017890 241 TQLPQAVGVAYSLKMEKKDACAVAY-TGDGGTSEGDFHAALN-FAAV--------MEAPVVFICRNNGWAISTNISEQFR 310 (364)
Q Consensus 241 ~~lp~AvG~A~A~k~~~~~~~vv~~-~GDGa~~eG~~~EALn-~Aa~--------~~LPvIfVV~NNg~ais~~~~~~~~ 310 (364)
..+++|.|+|++ + -++++.+ ++++.. ..++.+. .++. +++|+++++.+.+ ....+++ .+
T Consensus 63 ~~~~~a~G~A~~----G-~rp~~~~t~~~F~~---~a~dqi~~~~a~~~~~~~~~~~~pvv~~~~~~g-~~~G~th--~s 131 (338)
T 1qs0_B 63 GIVGTAVGMGAY----G-LRPVVEIQFADYFY---PASDQIVSEMARLRYRSAGEFIAPLTLRMPCGG-GIYGGQT--HS 131 (338)
T ss_dssp HHHHHHHHHHHH----T-CEEEEECSCGGGCG---GGHHHHHTTTTTHHHHTTTSSCCCCEEEEEECC-SSSCCSS--SS
T ss_pred HHHHHHHHHHhC----C-CEEEEEeccHhHHH---HHHHHHHHHHHHHhhhcCCCCCCCEEEEEeCCC-CCCCccc--cc
Confidence 335567777665 2 2444434 888873 3455553 3432 3599999987655 3333332 22
Q ss_pred CccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEE
Q 017890 311 SDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLV 356 (364)
Q Consensus 311 ~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LI 356 (364)
..+++-...-.|+.++.-- |+.+.+..++.|++ .++|++|
T Consensus 132 ~~d~~~l~~iP~l~V~~Ps--d~~e~~~~l~~A~~----~~~Pv~i 171 (338)
T 1qs0_B 132 QSPEAMFTQVCGLRTVMPS--NPYDAKGLLIASIE----CDDPVIF 171 (338)
T ss_dssp CCCHHHHTTSTTCEEECCC--SHHHHHHHHHHHHH----SSSCEEE
T ss_pred ccHHHHHhcCCCCEEEeeC--CHHHHHHHHHHHHh----cCCcEEE
Confidence 3355433333488887654 89999999999886 3689988
No 80
>2vk8_A Pyruvate decarboxylase isozyme 1; asymmetric active sites, phenylalanine catabolism, tryptophan catabolism, thiamine pyrophosphate; HET: TPP; 1.42A {Saccharomyces cerevisiae} PDB: 1qpb_A* 2vk1_A* 2w93_A* 1pyd_A* 1pvd_A* 2vk4_A* 2vjy_A* 2g1i_A*
Probab=84.67 E-value=1.6 Score=44.38 Aligned_cols=106 Identities=11% Similarity=0.051 Sum_probs=63.4
Q ss_pred HHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCccccc---cccc---ccCCccHHHHH
Q 017890 245 QAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAIST---NISE---QFRSDGIVVKG 318 (364)
Q Consensus 245 ~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~---~~~~---~~~~~~ia~~a 318 (364)
+|.|.|.+. + ..+++|..|=|+++ ..-++..|..-++|+|+|+-+-...... .... .....+..+.+
T Consensus 57 ~A~Gyar~t---g-~~v~~~TsGpG~~N---~~~gia~A~~~~~Pll~itg~~~~~~~~~~~~~~~~~g~~~~q~~~~~~ 129 (563)
T 2vk8_A 57 AADGYARIK---G-MSCIITTFGVGELS---ALNGIAGSYAEHVGVLHVVGVPSISAQAKQLLLHHTLGNGDFTVFHRMS 129 (563)
T ss_dssp HHHHHHHHH---S-CEEEEEETTHHHHH---HHHHHHHHHHHTCCEEEEEEECCHHHHHTTCCCTTSCSSSCSSHHHHHH
T ss_pred HHHHHHHhh---C-CcEEEEcCCCcHHH---HHHHHHHHHhhCCCEEEEECCCChHHhhcccccccccCCcchHHHHHHh
Confidence 566766553 4 34666667888776 4556778888999999998764422110 0000 00112355667
Q ss_pred hhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEE
Q 017890 319 RAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVR 359 (364)
Q Consensus 319 ~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~ 359 (364)
+.+--...++. +++++.+.+.+|+..|....||+.|++-
T Consensus 130 ~~~~k~~~~v~--~~~~~~~~i~~A~~~A~~~~GPV~l~iP 168 (563)
T 2vk8_A 130 ANISETTAMIT--DIATAPAEIDRCIRTTYVTQRPVYLGLP 168 (563)
T ss_dssp HTTCSEEEECC--CTTTHHHHHHHHHHHHHHHTSCEEEEEE
T ss_pred hhhEEEEEEeC--CHHHHHHHHHHHHHHHHhCCCCEEEEec
Confidence 77776677775 4444555555555544444689999874
No 81
>1ik6_A Pyruvate dehydrogenase; E1BETA, tetramer, GXXXG, oxidoreductase; 2.00A {Pyrobaculum aerophilum} SCOP: c.36.1.7 c.48.1.2
Probab=83.11 E-value=5.4 Score=38.88 Aligned_cols=97 Identities=16% Similarity=-0.013 Sum_probs=53.2
Q ss_pred hhHHHHHHHHhhhccCCCeEEEE-eCCCccccccHHHHH-HHHHHc--------CCCEEEEEEcCCcccccccccccCCc
Q 017890 243 LPQAVGVAYSLKMEKKDACAVAY-TGDGGTSEGDFHAAL-NFAAVM--------EAPVVFICRNNGWAISTNISEQFRSD 312 (364)
Q Consensus 243 lp~AvG~A~A~k~~~~~~~vv~~-~GDGa~~eG~~~EAL-n~Aa~~--------~LPvIfVV~NNg~ais~~~~~~~~~~ 312 (364)
+++|.|+|++ + -++++.+ ++|... ..++.+ +-++.. ++||++++.+.+..-..+++. ..
T Consensus 111 v~~a~G~A~~----G-~rpv~~~tf~~Fl~---~a~Dqi~~~~a~~~~~~~g~~~~pvv~~~~~gg~~g~g~~hs---~~ 179 (369)
T 1ik6_A 111 LGFAMGMAMA----G-LKPVAEIQFVDFIW---LGADELLNHIAKLRYRSGGNYKAPLVVRTPVGSGTRGGLYHS---NS 179 (369)
T ss_dssp HHHHHHHHHT----T-CEEEEECCCC-------CCHHHHHHHHHHHHC------CCCCEEEEEECC--------------
T ss_pred HHHHHHHHHC----C-CeeEEEecchhHHH---HHHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCCCCCCcccc---cc
Confidence 4556666654 2 3445544 888763 234444 335544 999999998776332222222 22
Q ss_pred cHHHHHhh-cCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEE
Q 017890 313 GIVVKGRA-YGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVE 357 (364)
Q Consensus 313 ~ia~~a~a-~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIe 357 (364)
+. ..... -|+.++.- .|+.+.+..++.|++ .++|++|-
T Consensus 180 ~~-a~l~~iPnl~V~~P--sd~~e~~~ll~~A~~----~~~Pv~i~ 218 (369)
T 1ik6_A 180 PE-AIFVHTPGLVVVMP--STPYNAKGLLKAAIR----GDDPVVFL 218 (369)
T ss_dssp HH-HHHHTCTTCEEECC--CSHHHHHHHHHHHHH----SSSCEEEE
T ss_pred HH-HHHcCCCCcEEEec--CCHHHHHHHHHHHHh----CCCCEEEE
Confidence 22 33333 48877754 378999999999886 46899883
No 82
>1umd_B E1-beta, 2-OXO acid dehydrogenase beta subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1um9_B* 1umc_B* 1umb_B*
Probab=81.89 E-value=6.4 Score=37.30 Aligned_cols=97 Identities=16% Similarity=0.090 Sum_probs=58.4
Q ss_pred chhHHHHHHHHhhhccCCCeEEEE-eCCCccccccHHHHHH-HHHH--------cCCCEEEEEEcCCcccccccccccCC
Q 017890 242 QLPQAVGVAYSLKMEKKDACAVAY-TGDGGTSEGDFHAALN-FAAV--------MEAPVVFICRNNGWAISTNISEQFRS 311 (364)
Q Consensus 242 ~lp~AvG~A~A~k~~~~~~~vv~~-~GDGa~~eG~~~EALn-~Aa~--------~~LPvIfVV~NNg~ais~~~~~~~~~ 311 (364)
.+++|.|+|++ + -++++.+ ++++. + ..++.+. .++. .++|+|+++. .++....... ...
T Consensus 63 ~v~~a~G~A~~----G-~~p~~~~t~~~F~-~--~a~dqi~~~~a~~~~~~~g~~~~pvv~~~~-~g~~~~~g~~--hs~ 131 (324)
T 1umd_B 63 IVGAALGMAAH----G-LRPVAEIQFADYI-F--PGFDQLVSQVAKLRYRSGGQFTAPLVVRMP-SGGGVRGGHH--HSQ 131 (324)
T ss_dssp HHHHHHHHHHH----T-CEEEEECSSGGGC-G--GGHHHHHHTTTTHHHHTTTSSCCCCEEEEE-ECSSSSCGGG--SSC
T ss_pred HHHHHHHHHHC----C-CEEEEEeccHhHH-H--HHHHHHHHHHHHHHhhcCCCCcCCEEEEEc-CCCCCCCCCc--cch
Confidence 35567777665 2 2444444 88886 2 2455553 2333 6889999887 3443322222 222
Q ss_pred ccHHHHHhh-cCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEE
Q 017890 312 DGIVVKGRA-YGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLV 356 (364)
Q Consensus 312 ~~ia~~a~a-~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LI 356 (364)
.+. ...+. -|+.++.- .|+.+.+..++.|++ .++|++|
T Consensus 132 ~~~-a~~~~iP~~~V~~P--~d~~e~~~~l~~a~~----~~~Pv~i 170 (324)
T 1umd_B 132 SPE-AHFVHTAGLKVVAV--STPYDAKGLLKAAIR----DEDPVVF 170 (324)
T ss_dssp CCH-HHHHTSTTCEEEEC--CSHHHHHHHHHHHHH----CSSCEEE
T ss_pred hHH-HHHhcCCCCEEEEe--CCHHHHHHHHHHHHh----cCCCEEE
Confidence 344 33333 37777754 389999999999986 5789987
No 83
>3uk1_A Transketolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, thiamine pyrophosphate; 2.15A {Burkholderia thailandensis} PDB: 3upt_A*
Probab=81.79 E-value=6.7 Score=41.74 Aligned_cols=100 Identities=14% Similarity=0.058 Sum_probs=64.3
Q ss_pred hhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcc--cccccccccCCccHHHHHhh
Q 017890 243 LPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWA--ISTNISEQFRSDGIVVKGRA 320 (364)
Q Consensus 243 lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~a--is~~~~~~~~~~~ia~~a~a 320 (364)
+++|.|+|+. +.-++++.++.+ |.+ ....++..++..++||+++.-..+++ ..++++ .+..+++-...-
T Consensus 461 v~~AaGlA~~----~G~~Pv~~~f~~--F~~-~~~~~ir~~a~~~lpv~~v~thdg~gvG~dG~TH--q~~ed~a~lr~i 531 (711)
T 3uk1_A 461 SAAINGLVLH----GGYKPFGGTFLT--FSD-YSRNALRVAALMKVPSIFVFTHDSIGLGEDGPTH--QSVEHVASLRLI 531 (711)
T ss_dssp HHHHHHHHHH----SSCEEEEEEEGG--GHH-HHHHHHHHHHHHTCCCEEEEECCSGGGCTTCTTT--CCSSHHHHHHTS
T ss_pred HHHHHHHHHc----CCCEEEEEEhHH--HHH-HHHHHHHHhhhcCCCEEEEEECCCcCcCCCCCcc--CChhHHHHHhcC
Confidence 4566676652 233456665533 322 23566777888999999999777754 445554 234455544444
Q ss_pred cCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEE
Q 017890 321 YGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVE 357 (364)
Q Consensus 321 ~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIe 357 (364)
-|+.+++- -|..++..+++.|++ .++|++|-
T Consensus 532 Pnl~V~~P--ad~~E~~~~l~~Ai~----~~~Pv~ir 562 (711)
T 3uk1_A 532 PNLDVWRP--ADTVETAVAWTYAVA----HQHPSCLI 562 (711)
T ss_dssp TTCEEECC--SSHHHHHHHHHHHHH----SSSCEEEE
T ss_pred CCCEEEec--CCHHHHHHHHHHHHh----cCCCEEEE
Confidence 47777653 378899999998886 57899873
No 84
>1ovm_A Indole-3-pyruvate decarboxylase; thiamine diphosphate, indole-3-acetic acid, TDP dependent enzyme, lyase; HET: TPP; 2.65A {Enterobacter cloacae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9
Probab=81.22 E-value=2.4 Score=42.92 Aligned_cols=106 Identities=14% Similarity=0.067 Sum_probs=62.3
Q ss_pred hHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccc---cc---cccCCccHHHH
Q 017890 244 PQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTN---IS---EQFRSDGIVVK 317 (364)
Q Consensus 244 p~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~---~~---~~~~~~~ia~~ 317 (364)
-+|.|.|.+. + -.++++..|=|.++ ..-++.-|..-++|+|+|+-+-....... .. ......+..+.
T Consensus 57 ~~A~Gyar~t---g-~~v~~~tsGpG~~N---~~~gv~~A~~~~~Pll~itg~~p~~~~~~~~~~~~~~g~~~~q~~~~~ 129 (552)
T 1ovm_A 57 YAADGYARCK---G-FAALLTTFGVGELS---AMNGIAGSYAEHVPVLHIVGAPGTAAQQRGELLHHTLGDGEFRHFYHM 129 (552)
T ss_dssp HHHHHHHHHH---S-CEEEEEETTHHHHH---THHHHHHHHHTTCCEEEEEEECCHHHHHHTCCCTTSCSSSCCSHHHHH
T ss_pred HHHHHHHHhh---C-CcEEEEccCCcHHH---HHHHHHHHhhhcCCEEEEECCCCHHHHhcccccccccCCCcHHHHHHH
Confidence 3577777664 3 34677777877765 34568888889999999997644321100 00 00011134556
Q ss_pred HhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEE
Q 017890 318 GRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVR 359 (364)
Q Consensus 318 a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~ 359 (364)
++.+--...+|.- +++.+.+++|+..+....||+.|++-
T Consensus 130 ~~~~tk~~~~v~~---~~~~~~i~~A~~~a~~~~GPV~l~iP 168 (552)
T 1ovm_A 130 SEPITVAQAVLTE---QNACYEIDRVLTTMLRERRPGYLMLP 168 (552)
T ss_dssp TGGGCSEEEECCT---TTHHHHHHHHHHHHHHHTCCEEEEEE
T ss_pred HHhheeEEEEEcc---ccHHHHHHHHHHHHHhCCCCEEEEee
Confidence 6667666777752 34444455555444444589999874
No 85
>3rim_A Transketolase, TK; TPP, transferase; HET: TPP; 2.49A {Mycobacterium tuberculosis}
Probab=80.08 E-value=7.6 Score=41.23 Aligned_cols=101 Identities=11% Similarity=0.028 Sum_probs=62.8
Q ss_pred hhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcc--cccccccccCCccHHHHHhh
Q 017890 243 LPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWA--ISTNISEQFRSDGIVVKGRA 320 (364)
Q Consensus 243 lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~a--is~~~~~~~~~~~ia~~a~a 320 (364)
+++|.|+|+. +.-++++..+..=+. ....++..++..++||+|+....+++ ..++++ .+.++++-...-
T Consensus 445 v~~A~GlA~~----gG~~Pv~~tF~~F~d---~~~~~ir~~al~~lpvv~v~thdg~gvG~dG~TH--q~ied~a~lr~i 515 (700)
T 3rim_A 445 GAILSGIVLH----GPTRAYGGTFLQFSD---YMRPAVRLAALMDIDTIYVWTHDSIGLGEDGPTH--QPIEHLSALRAI 515 (700)
T ss_dssp HHHHHHHHHH----SSCEEEEEEEGGGGG---GGHHHHHHHHHHTCCCEEEEECCSGGGCTTCTTT--SCSSHHHHHHTS
T ss_pred HHHHHHHHHc----CCCEEEEEecHHHHH---HHHHHHHHhcCCCCCEEEEEeCCCcccCCCCCcc--CChhHHHHHhcC
Confidence 3455666554 233445543322221 12345778899999999999877764 445555 234556554444
Q ss_pred cCeEEEEEeCCCHHHHHHHHHHHHHHhhcCC--CcEEEE
Q 017890 321 YGIRSIRVDGNDALAVYTAVQAAREMAISEK--RPVLVE 357 (364)
Q Consensus 321 ~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~--~P~LIe 357 (364)
-|+.+++= -|..++..+++.|++. .+ +|++|-
T Consensus 516 Pnl~V~~P--ad~~e~~~~l~~Ai~~---~~~~~Pv~ir 549 (700)
T 3rim_A 516 PRLSVVRP--ADANETAYAWRTILAR---RNGSGPVGLI 549 (700)
T ss_dssp TTCEEECC--SSHHHHHHHHHHHHTT---TTCSSCEEEE
T ss_pred CCCEEEeC--CCHHHHHHHHHHHHHc---cCCCCCEEEE
Confidence 57777653 3788999999988863 34 699874
No 86
>2bfd_B 2-oxoisovalerate dehydrogenase beta subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1dtw_B* 1olu_B* 1ols_B* 1v11_B* 1v16_B* 1v1m_B* 1u5b_B* 1wci_B* 1v1r_B* 1x7x_B* 1x7w_B* 1x7z_B* 1x80_B* 2beu_B* 2bev_B* 2bew_B* 2bfb_B* 2bfc_B* 1x7y_B* 2bfe_B* ...
Probab=76.60 E-value=6.6 Score=37.66 Aligned_cols=97 Identities=10% Similarity=0.036 Sum_probs=58.6
Q ss_pred hhHHHHHHHHhhhccCCCeEEEE-eCCCccccccHHHHHH-HHHHc--------CC-CEEEEEEcCCcccccccccccCC
Q 017890 243 LPQAVGVAYSLKMEKKDACAVAY-TGDGGTSEGDFHAALN-FAAVM--------EA-PVVFICRNNGWAISTNISEQFRS 311 (364)
Q Consensus 243 lp~AvG~A~A~k~~~~~~~vv~~-~GDGa~~eG~~~EALn-~Aa~~--------~L-PvIfVV~NNg~ais~~~~~~~~~ 311 (364)
+++|.|+|++ + -++++.+ ++++.. -.++.+. .++.+ ++ ||++++...+. ...+++ .+.
T Consensus 80 v~~a~G~A~~----G-~rp~~~~tf~~F~~---~a~dqi~~~~a~~~~~~~g~~~~~pvv~~~~~~g~-~~G~th--~~~ 148 (342)
T 2bfd_B 80 VGFGIGIAVT----G-ATAIAEIQFADYIF---PAFDQIVNEAAKYRYRSGDLFNCGSLTIRSPWGCV-GHGALY--HSQ 148 (342)
T ss_dssp HHHHHHHHHT----T-CCEEEECSSGGGCG---GGHHHHHTTGGGHHHHTTTSSCCTTEEEEEEESCC-SSCGGG--SSC
T ss_pred HHHHHHHHHC----C-CeeEEEecchhHHH---HHHHHHHHHHHHHHhhhcCCccCCCEEEEEecCCC-CCCcch--hhH
Confidence 4566676664 2 3445544 888854 2445443 34432 44 99999876543 333433 223
Q ss_pred ccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEE
Q 017890 312 DGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLV 356 (364)
Q Consensus 312 ~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LI 356 (364)
.+++-...--|+.++.- .|+.+.+..++.|++ .++|++|
T Consensus 149 ~d~~~l~~iP~l~V~~P--sd~~e~~~~l~~a~~----~~~Pv~i 187 (342)
T 2bfd_B 149 SPEAFFAHCPGIKVVIP--RSPFQAKGLLLSCIE----DKNPCIF 187 (342)
T ss_dssp CCHHHHHTSTTCEEECC--SSHHHHHHHHHHHHH----SSSCEEE
T ss_pred hHHHHHhcCCCcEEEee--CCHHHHHHHHHHHHh----cCCcEEE
Confidence 45543333337777654 389999999999886 3689988
No 87
>3ibs_A Conserved hypothetical protein BATB; structural genomics, protein structure, midwest center for S genomics, MCSG, PSI-2; HET: MSE; 2.10A {Bacteroides thetaiotaomicron}
Probab=76.47 E-value=13 Score=32.01 Aligned_cols=90 Identities=17% Similarity=0.052 Sum_probs=51.1
Q ss_pred cchhHHHHHHHHhhhcc-CCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccccc------------c
Q 017890 241 TQLPQAVGVAYSLKMEK-KDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNIS------------E 307 (364)
Q Consensus 241 ~~lp~AvG~A~A~k~~~-~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~------------~ 307 (364)
+.+..|+-.|+..-... ....+|+++.||....++..+++..+...+++|..|-.-+.-+...|.. .
T Consensus 92 T~l~~al~~a~~~l~~~~~~~~~ivllTDG~~~~~~~~~~~~~~~~~~i~v~~igig~~~~~~~~~~g~~~~~~~~~g~~ 171 (218)
T 3ibs_A 92 TAIGEAINLATRSFTPQEGVGRAIIVITDGENHEGGAVEAAKAAAEKGIQVSVLGVGMPEGAPIPVEGTNDYRRDREGNV 171 (218)
T ss_dssp CCHHHHHHHHHTTSCSCSSCCEEEEEEECCTTCCSCHHHHHHHHHTTTEEEEEEEESCTTCEECBCTTSSCBCBCTTSCB
T ss_pred CcHHHHHHHHHHHHhhCCCCCcEEEEEcCCCCCCCcHHHHHHHHHhcCCEEEEEEecCCCCCcccccCCCceeEcCCCCE
Confidence 44444544444221111 3457999999999988878887887777777775554433111100000 0
Q ss_pred ---ccCCccHHHHHhhcCeEEEEEeC
Q 017890 308 ---QFRSDGIVVKGRAYGIRSIRVDG 330 (364)
Q Consensus 308 ---~~~~~~ia~~a~a~G~~~~~VDG 330 (364)
......+...|..-|...+.++.
T Consensus 172 ~~~~~~~~~L~~iA~~~gG~~~~~~~ 197 (218)
T 3ibs_A 172 IVTRLNEGMCQEIAKDGKGIYVRVDN 197 (218)
T ss_dssp CEECCCHHHHHHHHHHTEEEEEEECS
T ss_pred eEecCCHHHHHHHHHhcCCEEEECCC
Confidence 11122356677778888888863
No 88
>1w85_B Pyruvate dehydrogenase E1 component, beta subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1w88_B* 3dva_B* 3dv0_B* 3duf_B*
Probab=75.85 E-value=6.8 Score=37.15 Aligned_cols=97 Identities=11% Similarity=-0.026 Sum_probs=57.3
Q ss_pred chhHHHHHHHHhhhccCCCeEEEE-eCCCccccccHHHHHH-HHHH--------cCCCEEEEEEcCCcccccccccccCC
Q 017890 242 QLPQAVGVAYSLKMEKKDACAVAY-TGDGGTSEGDFHAALN-FAAV--------MEAPVVFICRNNGWAISTNISEQFRS 311 (364)
Q Consensus 242 ~lp~AvG~A~A~k~~~~~~~vv~~-~GDGa~~eG~~~EALn-~Aa~--------~~LPvIfVV~NNg~ais~~~~~~~~~ 311 (364)
.+++|+|+|++ + -++++.+ ++++.. ..++.+. -++. .++|+|+++. .++....... ...
T Consensus 62 ~v~~a~G~A~~----G-~rp~~~~t~~~F~~---~a~dqi~~~~a~~~~~~~g~~~~pvv~~~~-~g~~~~~g~~--hs~ 130 (324)
T 1w85_B 62 IGGLAIGLALQ----G-FRPVPEIQFFGFVY---EVMDSICGQMARIRYRTGGRYHMPITIRSP-FGGGVHTPEL--HSD 130 (324)
T ss_dssp HHHHHHHHHHT----T-CEEEEBCSSGGGGG---GTHHHHHTTGGGHHHHTTTSSCCCCEEEEE-ECSSSCCCTT--SSC
T ss_pred HHHHHHHHHhC----C-CEEEEEecchhHHH---HHHHHHHHHHHHHhhhccCCCcCCEEEEEe-ccCCCCCCCc--ccc
Confidence 35566676654 2 2344434 888862 2455553 2333 6899999887 3443322211 222
Q ss_pred ccHHHHHhh-cCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEE
Q 017890 312 DGIVVKGRA-YGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLV 356 (364)
Q Consensus 312 ~~ia~~a~a-~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LI 356 (364)
.+. ....+ .|+.++.- .|+.+.+..++.|++ .++|++|
T Consensus 131 ~~~-a~~~~iP~l~V~~P--sd~~e~~~~l~~a~~----~~~Pv~i 169 (324)
T 1w85_B 131 SLE-GLVAQQPGLKVVIP--STPYDAKGLLISAIR----DNDPVIF 169 (324)
T ss_dssp CCH-HHHTTSTTCEEECC--SSHHHHHHHHHHHHH----SSSCEEE
T ss_pred cHH-HHHccCCCCEEEee--CCHHHHHHHHHHHHH----cCCCEEE
Confidence 334 33333 37776653 489999999999886 4689987
No 89
>3hww_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- carboxylate synthase; menaquinone, THDP, Mg, vitamin K2, carboxylase, magnesium; HET: AKG; 1.95A {Escherichia coli k-12} PDB: 3flm_A* 3hwx_A* 2jlc_A* 2jla_A*
Probab=74.67 E-value=11 Score=38.35 Aligned_cols=105 Identities=13% Similarity=0.052 Sum_probs=63.0
Q ss_pred HHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhcCeE
Q 017890 245 QAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIR 324 (364)
Q Consensus 245 ~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~ 324 (364)
+|.|.|.+ .++-.+++|..|=|+++ ..-++..|..-++|+|+|.-+-.........-| ..|....++.+--.
T Consensus 61 ~AdGyAr~---tG~pgv~~~TsGpG~~N---~~~gia~A~~d~vPll~itG~~~~~~~g~~~~Q--~~d~~~~~~~~tk~ 132 (556)
T 3hww_A 61 LALGLAKV---SKQPVAVIVTSGTAVAN---LYPALIEAGLTGEKLILLTADRPPELIDCGANQ--AIRQPGMFASHPTH 132 (556)
T ss_dssp HHHHHHHH---HCSCEEEEECSSHHHHT---THHHHHHHHHHCCCEEEEEEECCGGGSSSSCTT--CCCCTTTTTTCSSE
T ss_pred HHHHHHHh---hCCCEEEEECCCcHHHh---hhHHHHHHHHhCCCeEEEeCCCCHHHhccCCCc--cccHHHHHhhheeE
Confidence 45566544 35556777777888886 346788888999999999865543221111111 12344444445444
Q ss_pred EEEEe-CC---CHHHHHHHHHHHHHHhhcCCCcEEEEEE
Q 017890 325 SIRVD-GN---DALAVYTAVQAAREMAISEKRPVLVEVR 359 (364)
Q Consensus 325 ~~~VD-Gn---D~~av~~a~~~A~~~ar~~~~P~LIea~ 359 (364)
..+|. .. ....+.+++++|+. ....||+.|++-
T Consensus 133 ~~~v~~~~~~~~~~~i~~~i~~A~~--~~r~GPV~i~iP 169 (556)
T 3hww_A 133 SISLPRPTQDIPARWLVSTIDHALG--TLHAGGVHINCP 169 (556)
T ss_dssp EEECCCCCTTSCHHHHHHHHHHHHH--SCCSSCEEEEEE
T ss_pred EEecCCCcccccHHHHHHHHHHHHh--cCCCCCEEEeCC
Confidence 55553 21 24567888888873 233589999975
No 90
>2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur, iron-sulfur cluster, pyruvate catabolism, TPP-dependent enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP: c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB: 1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A* 2pda_A* 2uza_A*
Probab=68.51 E-value=12 Score=42.39 Aligned_cols=107 Identities=15% Similarity=0.050 Sum_probs=67.9
Q ss_pred chhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcc---cccccccccCCccHHHHH
Q 017890 242 QLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWA---ISTNISEQFRSDGIVVKG 318 (364)
Q Consensus 242 ~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~a---is~~~~~~~~~~~ia~~a 318 (364)
.+.+++|++++ +.++++.+--.++. ...|.|..++-..+|+|+++-+.... ++...+ ..++. .+
T Consensus 66 A~~aaiGAa~a------GaR~~t~Ts~~Gl~--lm~e~l~~~ag~~~P~Vi~va~R~g~~~glsi~~~----hsd~~-~a 132 (1231)
T 2c42_A 66 AAGAVHGALAA------GALTTTFTASQGLL--LMIPNMYKISGELLPGVFHVTARAIAAHALSIFGD----HQDIY-AA 132 (1231)
T ss_dssp HHHHHHHHHHT------TCCEEEEECHHHHH--HHHHHHHHHHHTTCCCEEEEEECCCCSSSBCCSCC----SHHHH-TT
T ss_pred HHHHHHHHHHc------CChHhhhccHHHHH--HHHHHHHHHhCCCCCEEEEECCCCccCCCCcCCCc----hhhHH-HH
Confidence 35677787775 33555554333333 24577765555689999888877643 222111 11221 24
Q ss_pred hhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeecc
Q 017890 319 RAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNFL 363 (364)
Q Consensus 319 ~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R~ 363 (364)
+..||.++. -.++.+.++-+..|.+.+.+...|+++-..++|.
T Consensus 133 r~~G~~vl~--pss~QEa~dl~~~Af~lAek~~~PVi~~~Dg~~~ 175 (1231)
T 2c42_A 133 RQTGFAMLA--SSSVQEAHDMALVAHLAAIESNVPFMHFFDGFRT 175 (1231)
T ss_dssp TTSSCEEEE--CCSHHHHHHHHHHHHHHHHHHCCCEEEEEETTTT
T ss_pred hcCCcEEEE--CCCHHHHHHHHHHHHHHHHHcCCCEEEEecCccc
Confidence 556886664 3479999999999988887788999987777653
No 91
>2yic_A 2-oxoglutarate decarboxylase; lyase; HET: TPP; 1.96A {Mycobacterium smegmatis} PDB: 2xta_A* 2y0p_A* 2xt9_A* 2yid_A*
Probab=54.81 E-value=32 Score=37.42 Aligned_cols=105 Identities=10% Similarity=0.037 Sum_probs=56.1
Q ss_pred hhHHHHHHHHhhhccCCCeEEEEeCCCcccccc---HHHHHHHHH-Hc--CCCEEEEEEcCCcccccccccccCCccHHH
Q 017890 243 LPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGD---FHAALNFAA-VM--EAPVVFICRNNGWAISTNISEQFRSDGIVV 316 (364)
Q Consensus 243 lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~---~~EALn~Aa-~~--~LPvIfVV~NNg~ais~~~~~~~~~~~ia~ 316 (364)
++.|+|+|+ .+++.+++.-.-=|.|..+. +..=++-+. .| ++||++++...+.+ .+|.+.+...+++..
T Consensus 597 vG~a~G~A~----~G~~~~~i~eaqf~dF~~~AQ~~~DQ~i~~~~~k~~~~~~vvi~~p~G~~G-~Gp~Hs~~~~E~~l~ 671 (868)
T 2yic_A 597 VGFEYGYSV----GNPDAMVLWEAQFGDFVNGAQSIIDEFISSGEAKWGQLSDVVLLLPHGHEG-QGPDHTSGRIERFLQ 671 (868)
T ss_dssp HHHHHHHHH----HCTTSEEEEECSSGGGGGGGHHHHHHTTTTHHHHHCCCCCCEEEEECCCSS-SCTTSSCCCHHHHHH
T ss_pred HHHHHHHHc----cCCCCceEEEEehHHHHhhHHHHHHHHHHHHHHHhCCCCCEEEEecCCCCC-CChhhcCCcHHHHHh
Confidence 444555544 45555554443334444333 222112221 23 67999999865543 445443332334443
Q ss_pred HHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEE
Q 017890 317 KGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLV 356 (364)
Q Consensus 317 ~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LI 356 (364)
...--|+.++.- .|+.+.+..++.++. +..++|++|
T Consensus 672 l~~~pnm~V~~P--s~p~~~~~lLr~a~~--~~~~~Pvii 707 (868)
T 2yic_A 672 LWAEGSMTIAMP--STPANYFHLLRRHGK--DGIQRPLIV 707 (868)
T ss_dssp HCCTTSCEEECC--CSHHHHHHHHHHHHH--SSCCCCEEE
T ss_pred cCCCCCCEEEEe--CCHHHHHHHHHHHHh--cCCCCcEEE
Confidence 333346766643 478899999988765 223589876
No 92
>2jgd_A 2-oxoglutarate dehydrogenase E1 component; flavoprotein, oxidoreductase, thiamine diphosphate, thiamine pyrophosphate, adenosine monophosphate; HET: AMP; 2.6A {Escherichia coli} PDB: 2jgd_B*
Probab=54.64 E-value=24 Score=38.72 Aligned_cols=65 Identities=12% Similarity=0.146 Sum_probs=38.7
Q ss_pred CCCEEEEEEcCCcccccccccccCCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEE
Q 017890 287 EAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLV 356 (364)
Q Consensus 287 ~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LI 356 (364)
++||++++.. +|...++.+.....+++.....--|+.++.- .|+.+.+..++.+.. +..++|++|
T Consensus 711 ~~~vv~~l~~-G~~g~G~~Hss~~~E~~l~~~~~pnm~V~~P--st~~e~~~lLr~a~~--~~~~~Pvii 775 (933)
T 2jgd_A 711 MCGLVMLLPH-GYEGQGPEHSSARLERYLQLCAEQNMQVCVP--STPAQVYHMLRRQAL--RGMRRPLVV 775 (933)
T ss_dssp CCCCEEEEEC-CCSSSCTTSSCCCHHHHHHTCCTTCCEEECC--CSHHHHHHHHHHHHH--SSCCCCEEE
T ss_pred CCCEEEEEeC-CCCCCCcccccchHHHHHHHhCCCCeEEEec--CCHHHHHHHHHHHHH--hcCCCcEEE
Confidence 7899999986 5544455433222233332222236666543 488999998988742 223789988
No 93
>2xt6_A 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET: TPP; 2.74A {Mycobacterium smegmatis}
Probab=53.58 E-value=32 Score=38.44 Aligned_cols=106 Identities=13% Similarity=0.101 Sum_probs=56.4
Q ss_pred HHHHHHHhhhccCCCeEEEEeCCCcccccc---HHHHHHHHH-Hc--CCCEEEEEEcCCcccccccccccCCccHHHHHh
Q 017890 246 AVGVAYSLKMEKKDACAVAYTGDGGTSEGD---FHAALNFAA-VM--EAPVVFICRNNGWAISTNISEQFRSDGIVVKGR 319 (364)
Q Consensus 246 AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~---~~EALn~Aa-~~--~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~ 319 (364)
++|.|++.-+.+++.+++.-.-=|.|..+. +..=++-+. .| ++||++.+...+.+ .++.+.+...+++.....
T Consensus 841 ~vg~a~G~A~~G~~~~~i~Eaqf~dF~~~aQ~~~DQ~i~~~~~k~~~~~~vv~~lp~G~~G-~G~~Hs~~~~E~~l~l~~ 919 (1113)
T 2xt6_A 841 AVGFEYGYSVGNPDAMVLWEAQFGDFVNGAQSIIDEFISSGEAKWGQLSDVVLLLPHGHEG-QGPDHTSGRIERFLQLWA 919 (1113)
T ss_dssp HHHHHHHHHHHCTTSEEEEECSSGGGGGGGHHHHHHTTTTHHHHHCCCCCCEEEEECCCSS-SCTTSSCCCHHHHHHHCC
T ss_pred HHHHHHHHHhcCCCCceEEEEEEHHHHhhhHHHHHHHHHHHHHHhCCCCCEEEEeCCCCCC-CChhhhcccHHHHHhcCC
Confidence 333343333445555555443334444433 222122221 23 67999999865533 555544432333433332
Q ss_pred hcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEE
Q 017890 320 AYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLV 356 (364)
Q Consensus 320 a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LI 356 (364)
--|+.++.. .|+.+.+..++.++. +..++|++|
T Consensus 920 ~pnm~V~~P--s~~~~~~~lLr~a~~--~~~~~Pvii 952 (1113)
T 2xt6_A 920 EGSMTIAMP--STPANYFHLLRRHGK--DGIQRPLIV 952 (1113)
T ss_dssp TTSCEEECC--SSHHHHHHHHHHHHH--SSCCCCEEE
T ss_pred CCCcEEEec--CCHHHHHHHHHHHHh--ccCCCCEEE
Confidence 346766543 478999999988765 223589987
No 94
>4hhu_A OR280; engineered protein, PSI-biology, structural genomi unknown function; HET: AE4 PG4; 2.00A {Synthetic construct}
Probab=50.73 E-value=19 Score=30.12 Aligned_cols=35 Identities=23% Similarity=0.209 Sum_probs=29.8
Q ss_pred hcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcE
Q 017890 320 AYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPV 354 (364)
Q Consensus 320 a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~ 354 (364)
+-|.-.++..|.|.+++.+|+++.+..+|+.-+.+
T Consensus 81 gsgvm~i~f~gddlea~ekalkemirqarkfagtv 115 (170)
T 4hhu_A 81 GSGVMVIVFEGDDLEALEKALKEMIRQARKFAGTV 115 (170)
T ss_dssp TCCEEEEEEECSCHHHHHHHHHHHHHHHHHTTCEE
T ss_pred CceEEEEEEecCcHHHHHHHHHHHHHHHHhhcceE
Confidence 45778888999999999999999999998886643
No 95
>2pqm_A Cysteine synthase; OASS, PLP, lyase; HET: PLP; 1.86A {Entamoeba histolytica} PDB: 3bm5_A*
Probab=41.21 E-value=2e+02 Score=26.93 Aligned_cols=66 Identities=20% Similarity=0.168 Sum_probs=38.4
Q ss_pred ccHHHHHHHH-HHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCC
Q 017890 274 GDFHAALNFA-AVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKR 352 (364)
Q Consensus 274 G~~~EALn~A-a~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~ 352 (364)
|+.--|+..+ +..++++++|+..+- + ..-....+.||.+++.+++.+ ...++.+.+.+.+.+.+.
T Consensus 87 GN~g~alA~aa~~~G~~~~iv~p~~~-----~-------~~k~~~~~~~GA~V~~~~~~~--~~~~~~~~a~~~~~~~~~ 152 (343)
T 2pqm_A 87 GNTGIALCQAGAVFGYRVNIAMPSTM-----S-------VERQMIMKAFGAELILTEGKK--GMPGAIEEVNKMIKENPG 152 (343)
T ss_dssp SHHHHHHHHHHHHHTCCEEEEEETTS-----C-------HHHHHHHHHTTCEEEEECGGG--HHHHHHHHHHHHHHHSTT
T ss_pred cHHHHHHHHHHHHcCCCEEEEECCCC-----C-------HHHHHHHHHCCCEEEEECCCC--CHHHHHHHHHHHHHhCCC
Confidence 3443445544 568999998887651 1 112346778999999998742 122344445555444445
Q ss_pred c
Q 017890 353 P 353 (364)
Q Consensus 353 P 353 (364)
+
T Consensus 153 ~ 153 (343)
T 2pqm_A 153 K 153 (343)
T ss_dssp T
T ss_pred c
Confidence 5
No 96
>2kl8_A OR15; structural genomics, PSI-2, protein structure initiative, de novo protein, ferrodoxin fold; NMR {Artificial gene}
Probab=36.13 E-value=47 Score=24.75 Aligned_cols=29 Identities=28% Similarity=0.211 Sum_probs=22.6
Q ss_pred EEEeCCCHHHHHHHHHHHHHHhhcCCCcE
Q 017890 326 IRVDGNDALAVYTAVQAAREMAISEKRPV 354 (364)
Q Consensus 326 ~~VDGnD~~av~~a~~~A~~~ar~~~~P~ 354 (364)
++..|.|.++..+|+++.+..+|+..+.+
T Consensus 5 irfrgddleafekalkemirqarkfagtv 33 (85)
T 2kl8_A 5 IRFRGDDLEAFEKALKEMIRQARKFAGTV 33 (85)
T ss_dssp EEEECSSHHHHHHHHHHHHHHHTTTTCEE
T ss_pred eeecCCcHHHHHHHHHHHHHHHHhhcceE
Confidence 45678888888888888888888876643
No 97
>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A
Probab=32.84 E-value=60 Score=25.49 Aligned_cols=37 Identities=11% Similarity=0.056 Sum_probs=27.3
Q ss_pred CCCCCCeeEEecCCCCccc-CCCCCCCCHHHHHHHHHH
Q 017890 102 SEKRVPCFRVLDDNGELIK-GSDFQQVSKEVAVKMYSH 138 (364)
Q Consensus 102 ~~~~~~~~rv~~~~g~~~~-~~~~~~~s~e~l~~ly~~ 138 (364)
....+|++-++|.+|+++. ....-..+.++++++++.
T Consensus 88 ~v~~~Pt~~~~d~~G~~v~~~~~~G~~~~~~l~~~l~~ 125 (134)
T 2fwh_A 88 NVLGLPTILFFDGQGQEHPQARVTGFMDAETFSAHLRD 125 (134)
T ss_dssp TCCSSSEEEEECTTSCBCGGGCBCSCCCHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCEeeeeeeeeccCHHHHHHHHHh
Confidence 4567899999999999973 222335788888887664
No 98
>1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis}
Probab=32.14 E-value=2.2e+02 Score=26.02 Aligned_cols=44 Identities=14% Similarity=-0.031 Sum_probs=28.3
Q ss_pred HHHhhcCeEEEEEe------------CCCHHHHHHHHHHHHHHhhcCCCcEEEEEE
Q 017890 316 VKGRAYGIRSIRVD------------GNDALAVYTAVQAAREMAISEKRPVLVEVR 359 (364)
Q Consensus 316 ~~a~a~G~~~~~VD------------GnD~~av~~a~~~A~~~ar~~~~P~LIea~ 359 (364)
+++...|+..+.++ +.+.++..+.++++++++++.+.++-.++.
T Consensus 86 ~~a~~~G~~~V~i~~~~S~~h~~~~~~~~~~e~~~~~~~~v~~a~~~G~~V~~~l~ 141 (295)
T 1ydn_A 86 EAAAAAHADEIAVFISASEGFSKANINCTIAESIERLSPVIGAAINDGLAIRGYVS 141 (295)
T ss_dssp HHHHHTTCSEEEEEEESCHHHHHHHTSSCHHHHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred HHHHHCCCCEEEEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEEEE
Confidence 45555688777776 345666667777777777776666544443
No 99
>1j0a_A 1-aminocyclopropane-1-carboxylate deaminase; PLP dependent, lyase; HET: PLP; 2.50A {Pyrococcus horikoshii} SCOP: c.79.1.1 PDB: 1j0b_A*
Probab=32.10 E-value=1.5e+02 Score=27.52 Aligned_cols=48 Identities=15% Similarity=0.232 Sum_probs=30.6
Q ss_pred ccHHHHHHHH-HHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhcCeEEEEEeCCC
Q 017890 274 GDFHAALNFA-AVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGND 332 (364)
Q Consensus 274 G~~~EALn~A-a~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~~~~VDGnD 332 (364)
|..--++.++ +..++|+++|+..+- . ...-.+..++||.+++.+++..
T Consensus 81 GN~g~alA~~a~~~G~~~~iv~p~~~----~-------~~~k~~~~~~~GA~v~~~~~~~ 129 (325)
T 1j0a_A 81 SNHAFVTGLAAKKLGLDAILVLRGKE----E-------LKGNYLLDKIMGIETRVYDAKD 129 (325)
T ss_dssp CHHHHHHHHHHHHTTCEEEEEEESCC----C-------SCHHHHHHHHTTCEEEEESCCS
T ss_pred hHHHHHHHHHHHHhCCcEEEEECCCC----C-------CCchHHHHHHCCCEEEEeCcch
Confidence 3344455554 467899988887653 0 1223356778999999888754
No 100
>2x5n_A SPRPN10, 26S proteasome regulatory subunit RPN10; nuclear protein, nucleus, ubiquitin; 1.30A {Schizosaccharomyces pombe}
Probab=32.05 E-value=49 Score=28.77 Aligned_cols=33 Identities=6% Similarity=-0.125 Sum_probs=21.7
Q ss_pred EEEEeCCCccccccHHHHHHHHHHcCCCEEEEE
Q 017890 262 AVAYTGDGGTSEGDFHAALNFAAVMEAPVVFIC 294 (364)
Q Consensus 262 vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV 294 (364)
++.+.||+...+++..++...+...++.|.+|-
T Consensus 110 iil~~~~~~~~~~~~~~~a~~lk~~gi~v~~Ig 142 (192)
T 2x5n_A 110 VAFVGSPIVEDEKNLIRLAKRMKKNNVAIDIIH 142 (192)
T ss_dssp EEEECSCCSSCHHHHHHHHHHHHHTTEEEEEEE
T ss_pred EEEEECCCCCCchhHHHHHHHHHHCCCEEEEEE
Confidence 555556665456677777777777777765543
No 101
>3f9u_A Putative exported cytochrome C biogenesis-related; exported cytochrome C biogenesis-related protein, bacteroide fragilis; 2.20A {Bacteroides fragilis nctc 9343}
Probab=31.73 E-value=80 Score=25.76 Aligned_cols=36 Identities=11% Similarity=0.183 Sum_probs=27.2
Q ss_pred CCCCCeeEEecCCCCcccCCCCCCCC-HHHHHHHHHHH
Q 017890 103 EKRVPCFRVLDDNGELIKGSDFQQVS-KEVAVKMYSHM 139 (364)
Q Consensus 103 ~~~~~~~rv~~~~g~~~~~~~~~~~s-~e~l~~ly~~M 139 (364)
...+|++-++|.+|+++.... -..+ .+++++..+..
T Consensus 128 v~~~Pt~~lid~~G~~~~~~~-G~~~~~~~l~~~l~~~ 164 (172)
T 3f9u_A 128 ANAQPFYVLIDNEGNPLNKSY-AYDEDISKYINFLQTG 164 (172)
T ss_dssp CCCSSEEEEECTTSCBSSCCB-CSCCCHHHHHHHHHHH
T ss_pred CCCcceEEEECCCCCEEeecc-CCCCCHHHHHHHHHHH
Confidence 457899999999999987542 2345 88887777664
No 102
>1m3s_A Hypothetical protein YCKF; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: c.80.1.3 PDB: 1viv_A
Probab=30.43 E-value=96 Score=25.87 Aligned_cols=40 Identities=15% Similarity=0.128 Sum_probs=32.7
Q ss_pred cCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCC
Q 017890 257 KKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNG 298 (364)
Q Consensus 257 ~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg 298 (364)
+++.++|++..-|... +.-+++..|...+.++|.|..|..
T Consensus 78 ~~~d~vI~iS~sG~t~--~~~~~~~~ak~~g~~vi~IT~~~~ 117 (186)
T 1m3s_A 78 AEGDLVIIGSGSGETK--SLIHTAAKAKSLHGIVAALTINPE 117 (186)
T ss_dssp CTTCEEEEECSSSCCH--HHHHHHHHHHHTTCEEEEEESCTT
T ss_pred CCCCEEEEEcCCCCcH--HHHHHHHHHHHCCCEEEEEECCCC
Confidence 4567888888888886 477889999999999999887654
No 103
>3dwg_A Cysteine synthase B; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} SCOP: c.79.1.0 PDB: 3fgp_A* 3dki_A* 3dwi_A*
Probab=30.25 E-value=2.1e+02 Score=26.53 Aligned_cols=62 Identities=19% Similarity=0.200 Sum_probs=36.1
Q ss_pred ccHHHHHHHH-HHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhcCeEEEEEeCC-CHHHHHHHHHHHHHHhhcC
Q 017890 274 GDFHAALNFA-AVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGN-DALAVYTAVQAAREMAISE 350 (364)
Q Consensus 274 G~~~EALn~A-a~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~~~~VDGn-D~~av~~a~~~A~~~ar~~ 350 (364)
|..--++..+ +..++++++|+-.+- + ..-.+..+.||.+++.+++. +..+ +.+.+.+.+.+.
T Consensus 82 GN~g~alA~aa~~~G~~~~iv~p~~~-----~-------~~k~~~~~~~GA~V~~~~~~~~~~~---~~~~a~~l~~~~ 145 (325)
T 3dwg_A 82 GNTGISLAMAARLKGYRLICVMPENT-----S-------VERRQLLELYGAQIIFSAAEGGSNT---AVATAKELAATN 145 (325)
T ss_dssp SHHHHHHHHHHHHHTCEEEEEEESSS-----C-------HHHHHHHHHHTCEEEEECSTTTHHH---HHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHcCCcEEEEECCCC-----C-------HHHHHHHHHCCCEEEEECCCCCHHH---HHHHHHHHHHhC
Confidence 4444455544 467999988876541 1 11235667899999999874 3333 334444444443
No 104
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=29.55 E-value=2e+02 Score=23.55 Aligned_cols=59 Identities=15% Similarity=0.057 Sum_probs=34.2
Q ss_pred cCCCEEEEEEcCCcccccccccccCCccHHHHHhhcCeEEEEEeC-CCHHHHHHHHHHHHHHhh
Q 017890 286 MEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDG-NDALAVYTAVQAAREMAI 348 (364)
Q Consensus 286 ~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~~~~VDG-nD~~av~~a~~~A~~~ar 348 (364)
.+.|+|+|..--.. ....+.........++.+|++.+.+.. .+-..+.+.+....+.++
T Consensus 126 ~~~piilv~nK~Dl----~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~g~gv~~lf~~l~~~i~ 185 (187)
T 3c5c_A 126 RSIPALLLGNKLDM----AQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQHVFHEAVREAR 185 (187)
T ss_dssp CCCCEEEEEECGGG----GGGCSSCHHHHHHHHHHHTCEEEECCSSSCSHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEEECcch----hhcCccCHHHHHHHHHHcCCcEEEEeecCccccHHHHHHHHHHHHh
Confidence 36787766642211 111222223455667778999999887 565666666666655443
No 105
>1jeo_A MJ1247, hypothetical protein MJ1247; RUMP pathway, phosphosugar, 3-hexulose-6-phosphate isomerase structural genomics; HET: CME CIT; 2.00A {Methanocaldococcus jannaschii} SCOP: c.80.1.3
Probab=29.39 E-value=1.2e+02 Score=25.03 Aligned_cols=40 Identities=20% Similarity=0.277 Sum_probs=32.6
Q ss_pred cCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCC
Q 017890 257 KKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNG 298 (364)
Q Consensus 257 ~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg 298 (364)
+++.++|++.--|...+ ..+++..|...+.++|.|..|..
T Consensus 81 ~~~d~vi~iS~sG~t~~--~~~~~~~ak~~g~~vi~IT~~~~ 120 (180)
T 1jeo_A 81 EKDDLLILISGSGRTES--VLTVAKKAKNINNNIIAIVCECG 120 (180)
T ss_dssp CTTCEEEEEESSSCCHH--HHHHHHHHHTTCSCEEEEESSCC
T ss_pred CCCCEEEEEeCCCCcHH--HHHHHHHHHHCCCcEEEEeCCCC
Confidence 45678888888888864 77889999999999999887654
No 106
>3ghf_A Septum site-determining protein MINC; structural genomics, cell division, cell cycle, septation, PSI-2, protein structure initiative; HET: CIT; 2.20A {Salmonella typhimurium LT2}
Probab=28.73 E-value=67 Score=26.09 Aligned_cols=45 Identities=16% Similarity=0.327 Sum_probs=34.5
Q ss_pred HHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhc--CCCcEEEEEEe
Q 017890 316 VKGRAYGIRSIRVDGNDALAVYTAVQAAREMAIS--EKRPVLVEVRL 360 (364)
Q Consensus 316 ~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~--~~~P~LIea~T 360 (364)
=|+..|++-++.+...|+.++.+.+.+-++.+-. .+.|++|++-.
T Consensus 10 lKG~~~~l~vl~l~~~d~~~l~~~L~~ki~~aP~FF~~aPVVlDl~~ 56 (120)
T 3ghf_A 10 LKGSSFTLSVVHLHEAEPEVIRQALEDKIAQAPAFLKHAPVVINVSG 56 (120)
T ss_dssp CCCCCCCCEEEEEESCCHHHHHHHHHHHHHHSHHHHTTCEEEEEEEE
T ss_pred EEcCeeeEEEEEeCCCCHHHHHHHHHHHHHhChHhhCCCcEEEEccc
Confidence 3566789999999888999999988877665543 36799998754
No 107
>1nw9_B Caspase 9, apoptosis-related cysteine protease; XIAP, caspase inhibition, caspase activation, dimerization; 2.40A {Homo sapiens} SCOP: c.17.1.1 PDB: 1jxq_A* 2ar9_A
Probab=28.46 E-value=1.2e+02 Score=27.88 Aligned_cols=56 Identities=7% Similarity=-0.014 Sum_probs=37.1
Q ss_pred EEEEEEcCCccccc----ccccccCCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHH
Q 017890 290 VVFICRNNGWAIST----NISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAARE 345 (364)
Q Consensus 290 vIfVV~NNg~ais~----~~~~~~~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~ 345 (364)
+.+||.|..|.... +.........+.+.++.+|+.+...+--+..++.+++++..+
T Consensus 23 ~aLIInn~~f~~~~~l~~R~Gt~~D~~~L~~~f~~LgF~V~~~~dlt~~em~~~l~~~~~ 82 (277)
T 1nw9_B 23 HCLIINNVNFCRESGLRTRTGSNIDCEKLRRRFSSLHFMVEVKGDLTAKKMVLALLELAR 82 (277)
T ss_dssp EEEEEECCCCCGGGTCCCCTTHHHHHHHHHHHHHHTTEEEEEEESCCHHHHHHHHHHHHH
T ss_pred EEEEEeCcccCCCCCCCCCCCcHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHH
Confidence 45555555675321 111112234677888999999988877788999999987654
No 108
>1pyo_A Caspase-2; apoptosis, caspase, alpha-beta, thiol protease, hydrolase-HY inhibitor complex; 1.65A {Homo sapiens} SCOP: c.17.1.1 PDB: 3rjm_A* 2p2c_A 3r5j_A 3r6g_A 3r6l_A 3r7b_A 3r7n_A 3r7s_A
Probab=28.21 E-value=1.3e+02 Score=25.84 Aligned_cols=34 Identities=12% Similarity=0.030 Sum_probs=28.2
Q ss_pred ccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHH
Q 017890 312 DGIVVKGRAYGIRSIRVDGNDALAVYTAVQAARE 345 (364)
Q Consensus 312 ~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~ 345 (364)
..+.+.++.+|+.+...+--...++.+.+++..+
T Consensus 61 ~~L~~~f~~LgF~V~~~~dlt~~em~~~l~~~~~ 94 (167)
T 1pyo_A 61 STLVTLFKLLGYDVHVLCDQTAQEMQEKLQNFAQ 94 (167)
T ss_dssp HHHHHHHHHTTEEEEEEESCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCEEEEeeCCCHHHHHHHHHHhhh
Confidence 4577888999999988877788999999987754
No 109
>1y7l_A O-acetylserine sulfhydrylase, O-acetylserine (thiol)-lyase; X-RAY crystallography, sulfhydrylase; HET: LLP; 1.55A {Haemophilus influenzae} SCOP: c.79.1.1 PDB: 3iqg_X* 3iqh_X* 3iqi_X* 1fcj_A* 1oas_A* 1d6s_A*
Probab=28.21 E-value=1.4e+02 Score=27.44 Aligned_cols=66 Identities=15% Similarity=0.147 Sum_probs=38.0
Q ss_pred ccHHHHHHHH-HHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCC
Q 017890 274 GDFHAALNFA-AVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKR 352 (364)
Q Consensus 274 G~~~EALn~A-a~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~ 352 (364)
|+.--++..+ +..++++++++-.+- + ..-....+.||.+++.+++.. ...++.+.+.+.+.+.++
T Consensus 71 GN~g~a~A~~a~~~G~~~~iv~p~~~-----~-------~~k~~~~~~~GA~v~~~~~~~--~~~~~~~~a~~~~~~~~~ 136 (316)
T 1y7l_A 71 GNTGIALAYVAAARGYKITLTMPETM-----S-------LERKRLLCGLGVNLVLTEGAK--GMKGAIAKAEEIVASDPS 136 (316)
T ss_dssp SHHHHHHHHHHHHHTCCEEEEEETTS-----C-------HHHHHHHHHTTCEEEEECGGG--HHHHHHHHHHHHHHHCTT
T ss_pred cHHHHHHHHHHHHcCCcEEEEECCCC-----C-------HHHHHHHHHcCCEEEEeCCCC--CHHHHHHHHHHHHHhCCC
Confidence 4444455544 467899988887651 1 112345678999999988742 122344445555444444
Q ss_pred c
Q 017890 353 P 353 (364)
Q Consensus 353 P 353 (364)
+
T Consensus 137 ~ 137 (316)
T 1y7l_A 137 R 137 (316)
T ss_dssp T
T ss_pred C
Confidence 4
No 110
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=27.88 E-value=1.3e+02 Score=24.91 Aligned_cols=41 Identities=15% Similarity=-0.034 Sum_probs=31.9
Q ss_pred ccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCC
Q 017890 256 EKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNG 298 (364)
Q Consensus 256 ~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg 298 (364)
.+++.++|++.--|...+ ..+++..|...+.++|.|..|..
T Consensus 85 ~~~~d~~i~iS~sG~t~~--~~~~~~~ak~~g~~vi~IT~~~~ 125 (187)
T 3sho_A 85 LRPTDLMIGVSVWRYLRD--TVAALAGAAERGVPTMALTDSSV 125 (187)
T ss_dssp CCTTEEEEEECCSSCCHH--HHHHHHHHHHTTCCEEEEESCTT
T ss_pred CCCCCEEEEEeCCCCCHH--HHHHHHHHHHCCCCEEEEeCCCC
Confidence 345667788777777764 77889999999999999987654
No 111
>2xhz_A KDSD, YRBH, arabinose 5-phosphate isomerase; lipopolysaccharide biogenesis; 2.60A {Escherichia coli}
Probab=26.11 E-value=1.3e+02 Score=24.87 Aligned_cols=40 Identities=18% Similarity=0.309 Sum_probs=32.2
Q ss_pred cCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCC
Q 017890 257 KKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNG 298 (364)
Q Consensus 257 ~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg 298 (364)
+++.++|++.--|...+ ..+++..|...+.++|.|..|..
T Consensus 95 ~~~d~vI~iS~sG~t~~--~~~~~~~ak~~g~~vi~IT~~~~ 134 (183)
T 2xhz_A 95 TPQDVVIAISNSGESSE--ITALIPVLKRLHVPLICITGRPE 134 (183)
T ss_dssp CTTCEEEEECSSSCCHH--HHHHHHHHHTTTCCEEEEESCTT
T ss_pred CCCCEEEEEeCCCCCHH--HHHHHHHHHHCCCCEEEEECCCC
Confidence 46678888888887764 77889999999999999887654
No 112
>3cf4_G Acetyl-COA decarboxylase/synthase epsilon subunit; methanomicrobia, iron-nikel-sulfur, 4Fe-NI-4S, oxidoreductas; 2.00A {Methanosarcina barkeri}
Probab=26.07 E-value=57 Score=27.63 Aligned_cols=34 Identities=6% Similarity=0.087 Sum_probs=26.4
Q ss_pred CCeEEEEeCCCccccccHHHHHHHHHHcCCCEEE
Q 017890 259 DACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVF 292 (364)
Q Consensus 259 ~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIf 292 (364)
.++.+.++|.|....+...|...+|...++||+.
T Consensus 34 AkrPvil~G~g~~~~~a~~~l~~lae~~~iPV~~ 67 (170)
T 3cf4_G 34 AKRPLLMVGTLALDPELLDRVVKISKAANIPIAA 67 (170)
T ss_dssp CSSEEEEECSTTCCHHHHHHHHHHHHHHTCCEEE
T ss_pred CCCCEEEECCCccchhHHHHHHHHHHHhCCCEEE
Confidence 3457788898888766666777899999999853
No 113
>1x0u_A Hypothetical methylmalonyl-COA decarboxylase ALPH; lyase; 2.20A {Sulfolobus tokodaii}
Probab=25.82 E-value=69 Score=32.66 Aligned_cols=14 Identities=14% Similarity=0.090 Sum_probs=10.3
Q ss_pred CCCEEEEEEcCCcc
Q 017890 287 EAPVVFICRNNGWA 300 (364)
Q Consensus 287 ~LPvIfVV~NNg~a 300 (364)
.+|.|.++.+...+
T Consensus 163 ~iP~Isvv~gp~~G 176 (522)
T 1x0u_A 163 VIPQITIMAGPAAG 176 (522)
T ss_dssp TSCEEEEECSEEEG
T ss_pred CCcEEEEEcCCCch
Confidence 36888888877664
No 114
>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A
Probab=25.54 E-value=54 Score=24.83 Aligned_cols=35 Identities=11% Similarity=0.219 Sum_probs=26.0
Q ss_pred CCCCCeeEEecCCCCcccCCCCCCCCHHHHHHHHHHH
Q 017890 103 EKRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHM 139 (364)
Q Consensus 103 ~~~~~~~rv~~~~g~~~~~~~~~~~s~e~l~~ly~~M 139 (364)
...+|.+-++|.+|+++ . .....+.+++.+..+.+
T Consensus 99 i~~~P~~~~id~~g~i~-~-~~g~~~~~~l~~~l~~~ 133 (136)
T 1zzo_A 99 VTQQPAYAFVDPHGNVD-V-VRGRMSQDELTRRVTAL 133 (136)
T ss_dssp CCSSSEEEEECTTCCEE-E-EESCCCHHHHHHHHHHH
T ss_pred CCCCceEEEECCCCCEE-E-EecCCCHHHHHHHHHHH
Confidence 45789999999999996 2 23346788887777654
No 115
>1on3_A Methylmalonyl-COA carboxyltransferase 12S subunit; domain duplication, multienzyme complex, transcarboxylase; HET: MCA; 1.90A {Propionibacterium freudenreichii} SCOP: c.14.1.4 c.14.1.4 PDB: 1on9_A*
Probab=25.35 E-value=79 Score=32.24 Aligned_cols=15 Identities=13% Similarity=-0.057 Sum_probs=10.9
Q ss_pred CCCEEEEEEcCCccc
Q 017890 287 EAPVVFICRNNGWAI 301 (364)
Q Consensus 287 ~LPvIfVV~NNg~ai 301 (364)
.+|.|.++.+...+.
T Consensus 167 ~iP~Isvv~gp~~GG 181 (523)
T 1on3_A 167 VVPQIAIIAGPCAGG 181 (523)
T ss_dssp TSCEEEEEEEEEESG
T ss_pred CCCEEEEEcCCCchH
Confidence 368888888876653
No 116
>3hbm_A UDP-sugar hydrolase; PSEG; 1.80A {Campylobacter jejuni subsp} PDB: 3hbn_A*
Probab=25.05 E-value=1.8e+02 Score=26.79 Aligned_cols=34 Identities=24% Similarity=0.357 Sum_probs=27.1
Q ss_pred EEEeCCCcc--ccccHHHHHHHHHHcCCCEEEEEEcC
Q 017890 263 VAYTGDGGT--SEGDFHAALNFAAVMEAPVVFICRNN 297 (364)
Q Consensus 263 v~~~GDGa~--~eG~~~EALn~Aa~~~LPvIfVV~NN 297 (364)
|++--||+. ..|.+.-+|.+|..++ .|.|+|.+.
T Consensus 3 i~ir~Da~~~IG~GHvmRcl~LA~~l~-~v~F~~~~~ 38 (282)
T 3hbm_A 3 VLFRSDSSSQIGFGHIKRDLVLAKQYS-DVSFACLPL 38 (282)
T ss_dssp EEEEECCBTTTBSHHHHHHHHHHTTCS-SEEEEECCC
T ss_pred EEEEEecCCCccccHHHHHHHHHHHHH-hCEEEEecC
Confidence 456667776 5778889999999888 999999754
No 117
>2h54_A Caspase-1; allosteric site, dimer interface, hydrolase; HET: PHQ; 1.80A {Homo sapiens} PDB: 1rwm_A* 1rwk_A* 1rwo_A* 1rwp_A* 1rwv_A* 1rww_A* 1rwn_A* 2h48_A* 2h4w_A* 1rwx_A* 2hbq_A* 2hby_A* 1ibc_A 3d6m_A* 2h4y_A* 2h51_A* 3d6f_A* 3d6h_A* 2hbz_A* 2hbr_A* ...
Probab=25.04 E-value=1.1e+02 Score=26.48 Aligned_cols=57 Identities=12% Similarity=0.080 Sum_probs=37.0
Q ss_pred CEEEEEEcCCccccc-ccccccCCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHH
Q 017890 289 PVVFICRNNGWAIST-NISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAARE 345 (364)
Q Consensus 289 PvIfVV~NNg~ais~-~~~~~~~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~ 345 (364)
.+.+||.|..|.-.. ..........+.+..+.+|+.+.....-+..++.+++++..+
T Consensus 44 g~ALIInn~~f~~~~~R~G~~~Da~~L~~~f~~LgF~V~~~~dlt~~em~~~l~~f~~ 101 (178)
T 2h54_A 44 RLALIICNEEFDSIPRRTGAEVDITGMTMLLQNLGYSVDVKKNLTASDMTTELEAFAH 101 (178)
T ss_dssp CEEEEEECCCCSSSCCCTTHHHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHT
T ss_pred CEEEEEehhhcCCCccCCCCHHHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHHh
Confidence 356666666674211 111111234577788899999988777788999999987643
No 118
>3etn_A Putative phosphosugar isomerase involved in capsu formation; YP_209877.1; HET: MSE CMK; 1.70A {Bacteroides fragilis nctc 9343}
Probab=24.94 E-value=1.3e+02 Score=26.32 Aligned_cols=40 Identities=13% Similarity=0.145 Sum_probs=32.4
Q ss_pred cCCCeEEEEeCCCccccccHHHHHHHHHH--cCCCEEEEEEcCC
Q 017890 257 KKDACAVAYTGDGGTSEGDFHAALNFAAV--MEAPVVFICRNNG 298 (364)
Q Consensus 257 ~~~~~vv~~~GDGa~~eG~~~EALn~Aa~--~~LPvIfVV~NNg 298 (364)
+++.++|++..-|... +..+++..|.. .+.++|.|..|..
T Consensus 105 ~~~DlvI~iS~SG~t~--~~i~~~~~ak~~~~Ga~vI~IT~~~~ 146 (220)
T 3etn_A 105 QENDLLLLISNSGKTR--EIVELTQLAHNLNPGLKFIVITGNPD 146 (220)
T ss_dssp CTTCEEEEECSSSCCH--HHHHHHHHHHHHCTTCEEEEEESCTT
T ss_pred CCCCEEEEEcCCCCCH--HHHHHHHHHHhcCCCCeEEEEECCCC
Confidence 4567888888888875 47888999999 9999999987654
No 119
>2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus}
Probab=24.64 E-value=76 Score=24.85 Aligned_cols=36 Identities=19% Similarity=0.466 Sum_probs=27.0
Q ss_pred CCCCCeeEEecCCCCcccCCCCCCCCHHHHHHHHHHH
Q 017890 103 EKRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHM 139 (364)
Q Consensus 103 ~~~~~~~rv~~~~g~~~~~~~~~~~s~e~l~~ly~~M 139 (364)
...+|.+=|+|.+|+++... ....+.+++.++.+.+
T Consensus 106 v~~~P~~~lid~~G~i~~~~-~g~~~~~~l~~~l~~~ 141 (152)
T 2lja_A 106 INGIPRFILLDRDGKIISAN-MTRPSDPKTAEKFNEL 141 (152)
T ss_dssp CCSSCCEEEECTTSCEEESS-CCCTTCHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCeEEEcc-CCCCCHHHHHHHHHHH
Confidence 45789999999999998753 3356777877776654
No 120
>3tbh_A O-acetyl serine sulfhydrylase; cysteine synthase, type II PLP dependent enzyme, serine ACET transferase; HET: LLP; 1.68A {Leishmania donovani} PDB: 3spx_A* 3t4p_A* 4air_A*
Probab=24.62 E-value=1.6e+02 Score=27.66 Aligned_cols=63 Identities=16% Similarity=0.124 Sum_probs=36.5
Q ss_pred ccHHHHHHHH-HHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcC
Q 017890 274 GDFHAALNFA-AVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISE 350 (364)
Q Consensus 274 G~~~EALn~A-a~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~ 350 (364)
|+.--++..| +..++|+++|+-.+- + ..-....+.||.+++.+++.+ ...++.+.+.+.+.+.
T Consensus 81 GN~g~alA~aa~~~G~~~~iv~p~~~-----~-------~~k~~~~~~~GA~V~~~~~~~--~~~~~~~~a~~~~~~~ 144 (334)
T 3tbh_A 81 GNTGVSLAHLGAIRGYKVIITMPESM-----S-------LERRCLLRIFGAEVILTPAAL--GMKGAVAMAKKIVAAN 144 (334)
T ss_dssp SHHHHHHHHHHHHHTCEEEEEEETTS-----C-------HHHHHHHHHTTCEEEEECGGG--HHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHhCCCEEEEECCCC-----C-------HHHHHHHHHCCCEEEEECCCC--CchHHHHHHHHHHHhC
Confidence 4444455544 467899888876541 1 112345678999999998642 2334455555554444
No 121
>3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} SCOP: c.47.1.0
Probab=24.52 E-value=74 Score=25.26 Aligned_cols=37 Identities=16% Similarity=0.107 Sum_probs=28.1
Q ss_pred CCCCCeeEEecCCCCcccCCCCCCCCHHHHHHHHHHHH
Q 017890 103 EKRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMV 140 (364)
Q Consensus 103 ~~~~~~~rv~~~~g~~~~~~~~~~~s~e~l~~ly~~M~ 140 (364)
...+|.+=|+|.+|+++... ....+.+++.+..+.++
T Consensus 114 i~~~P~~~lid~~G~i~~~~-~g~~~~~~l~~~l~~~l 150 (165)
T 3or5_A 114 ITGIPTSFVIDASGNVSGVI-VGPRSKADFDRIVKMAL 150 (165)
T ss_dssp SCSSSEEEEECTTSBEEEEE-CSCCCHHHHHHHHHHHH
T ss_pred CCCCCeEEEECCCCcEEEEE-cCCCCHHHHHHHHHHHH
Confidence 56789999999999997542 33568888888777654
No 122
>4aec_A Cysteine synthase, mitochondrial; lyase, cysteine synthesis, assimilatory sulfate reduction, S plant inorganic sulfur uptake; HET: PLP; 2.40A {Arabidopsis thaliana}
Probab=24.52 E-value=2.2e+02 Score=28.04 Aligned_cols=68 Identities=19% Similarity=0.173 Sum_probs=38.4
Q ss_pred ccHHHHHHHH-HHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCC
Q 017890 274 GDFHAALNFA-AVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKR 352 (364)
Q Consensus 274 G~~~EALn~A-a~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~ 352 (364)
|..--++.+| +..++++++|+-.+- + ..-.+..+.||.+++.+++.+ ...++.+.|.+.+++.++
T Consensus 184 GNhG~AlA~aAa~~Gl~~~IvmP~~~-----s-------~~k~~~~r~~GAeVv~v~~~~--~~~~a~~~a~el~~~~~~ 249 (430)
T 4aec_A 184 GNTGIGLAFIAASRGYRLILTMPASM-----S-------MERRVLLKAFGAELVLTDPAK--GMTGAVQKAEEILKNTPD 249 (430)
T ss_dssp SHHHHHHHHHHHHHTCEEEEEEETTS-----C-------HHHHHHHHHTTCEEEEECGGG--HHHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHHhCCEEEEEEcCCC-----C-------HHHHHHHHHCCCEEEEECCCC--ChHHHHHHHHHHHHhcCC
Confidence 4433445544 567999988876541 1 122345678999999997432 233445555555554444
Q ss_pred cEE
Q 017890 353 PVL 355 (364)
Q Consensus 353 P~L 355 (364)
..+
T Consensus 250 ~~~ 252 (430)
T 4aec_A 250 AYM 252 (430)
T ss_dssp EEE
T ss_pred cEE
Confidence 443
No 123
>2khz_A C-MYC-responsive protein RCL; flexible loop, nucleus, phosphoprotein, nuclear protein; NMR {Rattus norvegicus} PDB: 2klh_A*
Probab=24.52 E-value=72 Score=27.07 Aligned_cols=36 Identities=22% Similarity=0.186 Sum_probs=28.5
Q ss_pred CCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcC
Q 017890 259 DACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNN 297 (364)
Q Consensus 259 ~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NN 297 (364)
...||+.++ ..+.|..+| +-+|...+.||+.+..++
T Consensus 78 aD~vva~~~--~~d~Gt~~E-iGyA~algKPVi~l~~~~ 113 (165)
T 2khz_A 78 ADVVVAEVT--QPSLGVGYE-LGRAVALGKPILCLFRPQ 113 (165)
T ss_dssp CSEEEEECS--SCCHHHHHH-HHHHHHTCSSEEEEECTT
T ss_pred CCEEEEECC--CCCCCHHHH-HHHHHHCCCEEEEEEcCC
Confidence 345666665 678888888 899999999999887655
No 124
>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10
Probab=24.05 E-value=64 Score=24.57 Aligned_cols=35 Identities=11% Similarity=0.045 Sum_probs=26.3
Q ss_pred CCCCCeeEEecCCCCcccCCCC---CCCCHHHHHHHHHHH
Q 017890 103 EKRVPCFRVLDDNGELIKGSDF---QQVSKEVAVKMYSHM 139 (364)
Q Consensus 103 ~~~~~~~rv~~~~g~~~~~~~~---~~~s~e~l~~ly~~M 139 (364)
...+|.+-++|.+|+++ . .. ...+.+++.+..+.+
T Consensus 97 i~~~P~~~lid~~G~i~-~-~~~~~g~~~~~~l~~~l~~l 134 (136)
T 1lu4_A 97 VPWQPAFVFYRADGTST-F-VNNPTAAMSQDELSGRVAAL 134 (136)
T ss_dssp CCSSSEEEEECTTSCEE-E-ECCSSSCCCHHHHHHHHHHC
T ss_pred CCCCCEEEEECCCCcEE-E-EEcCCCccCHHHHHHHHHHH
Confidence 46789999999999997 2 22 356788888777653
No 125
>3od5_A Caspase-6; caspase domain, apoptotic protease, hydrolase-hydrolase INHI complex; 1.60A {Homo sapiens} SCOP: c.17.1.0 PDB: 3k7e_A 3s70_A 3v6m_A 3v6l_A 3nr2_A 4fxo_A 2wdp_A 3nkf_A 3s8e_A 4ejf_A 3qnw_A* 3p4u_A* 3p45_B 3qnw_B* 3p4u_B*
Probab=23.92 E-value=1.3e+02 Score=27.87 Aligned_cols=56 Identities=7% Similarity=0.046 Sum_probs=38.0
Q ss_pred CEEEEEEcCCccccc--c--cccccCCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHH
Q 017890 289 PVVFICRNNGWAIST--N--ISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAR 344 (364)
Q Consensus 289 PvIfVV~NNg~ais~--~--~~~~~~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~ 344 (364)
.+.+||.|-.|.-.+ + .......+.+.+.++.+|+.+...+--+..++.++++++.
T Consensus 22 g~aLIInn~~F~~~~~l~~R~Gt~~D~~~L~~~f~~LGF~V~~~~dlt~~em~~~l~~~~ 81 (278)
T 3od5_A 22 GIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVKCFNDLKAEELLLKIHEVS 81 (278)
T ss_dssp CEEEEEECCCCCGGGCCCCCTTHHHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHH
T ss_pred CEEEEEeccccCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHH
Confidence 356666666675321 1 1111223457788899999999888788999999999864
No 126
>4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae}
Probab=23.89 E-value=53 Score=24.77 Aligned_cols=35 Identities=17% Similarity=0.306 Sum_probs=26.4
Q ss_pred CCCCCeeEEecCCCCcccCCCCCCCCHHHHHHHHHH
Q 017890 103 EKRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSH 138 (364)
Q Consensus 103 ~~~~~~~rv~~~~g~~~~~~~~~~~s~e~l~~ly~~ 138 (364)
...+|.+-|+|.+|+++... ....+.+++.+..+.
T Consensus 102 v~~~P~~~lid~~G~i~~~~-~g~~~~~~l~~~l~~ 136 (138)
T 4evm_A 102 VRSYPTQAFIDKEGKLVKTH-PGFMEKDAILQTLKE 136 (138)
T ss_dssp CCSSSEEEEECTTCCEEEEE-ESCCCHHHHHHHHHH
T ss_pred cccCCeEEEECCCCcEEEee-cCCCcHHHHHHHHHh
Confidence 46789999999999997542 335678888777654
No 127
>2d1f_A Threonine synthase; amino acid synthesis, pyridoxal-5'-phosphate, PLP, lyase; HET: PLP; 2.50A {Mycobacterium tuberculosis}
Probab=23.51 E-value=1.6e+02 Score=27.82 Aligned_cols=48 Identities=21% Similarity=0.315 Sum_probs=28.0
Q ss_pred cccHHHHHH-HHHHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhcCeEEEEEeCC
Q 017890 273 EGDFHAALN-FAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGN 331 (364)
Q Consensus 273 eG~~~EALn-~Aa~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~~~~VDGn 331 (364)
.|+.--++. .|+..++++++++-.+.. ...-....+.||.+++.|+++
T Consensus 93 sGN~g~alA~~a~~~G~~~~i~~p~~~~-----------~~~k~~~~~~~GA~v~~v~~~ 141 (360)
T 2d1f_A 93 TGNTSASAAAYAARAGITCAVLIPQGKI-----------AMGKLAQAVMHGAKIIQIDGN 141 (360)
T ss_dssp SSHHHHHHHHHHHHHTCEEEEEECSSCC-----------CHHHHHHHHHTTCEEEEBSSC
T ss_pred CcHHHHHHHHHHHHcCCcEEEEEcCCCC-----------CHHHHHHHHHcCCEEEEECCC
Confidence 344334444 345678888877765420 111224567788888888874
No 128
>3fxa_A SIS domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.60A {Listeria monocytogenes str}
Probab=23.46 E-value=1e+02 Score=26.22 Aligned_cols=40 Identities=13% Similarity=0.194 Sum_probs=32.5
Q ss_pred cCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCC
Q 017890 257 KKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNG 298 (364)
Q Consensus 257 ~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg 298 (364)
+++.++|++..-|...+ ..+++..|...+.++|.|..|..
T Consensus 91 ~~~dvvI~iS~sG~t~~--~~~~~~~ak~~g~~vi~IT~~~~ 130 (201)
T 3fxa_A 91 QKEDILILISKGGNTGE--LLNLIPACKTKGSTLIGVTENPD 130 (201)
T ss_dssp CTTCEEEEECSSSCCHH--HHTTHHHHHHHTCEEEEEESCTT
T ss_pred CCCCEEEEEeCCCCCHH--HHHHHHHHHHcCCeEEEEECCCC
Confidence 46678888888887764 77889999999999999987654
No 129
>3ss7_X D-serine dehydratase; type II fold, ALFA,beta-elimination, P 5'-phosphate, lyase; HET: PLP; 1.55A {Escherichia coli} PDB: 3ss9_X* 3r0x_A* 3r0z_A
Probab=23.43 E-value=2.1e+02 Score=28.09 Aligned_cols=20 Identities=0% Similarity=0.122 Sum_probs=13.7
Q ss_pred CCCCCHHHHHHHHHHHHHHH
Q 017890 124 FQQVSKEVAVKMYSHMVTLQ 143 (364)
Q Consensus 124 ~~~~s~e~l~~ly~~M~~~R 143 (364)
...++.+++.+.++.+..-.
T Consensus 41 ~~~~~~~di~~a~~~l~~~~ 60 (442)
T 3ss7_X 41 YVGLTEQDVQDAHARLSRFA 60 (442)
T ss_dssp GTSCCHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHhCH
Confidence 34678888888888655433
No 130
>3gxh_A Putative phosphatase (DUF442); YP_001181608.1, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.40A {Shewanella putrefaciens cn-32} PDB: 3gxg_A*
Probab=23.19 E-value=2.5e+02 Score=23.02 Aligned_cols=44 Identities=18% Similarity=0.066 Sum_probs=26.8
Q ss_pred HHHHHhhcCeEEEE--EeCCCH--HHHHHHHHHHHHHhhcCCCcEEEEEEe
Q 017890 314 IVVKGRAYGIRSIR--VDGNDA--LAVYTAVQAAREMAISEKRPVLVEVRL 360 (364)
Q Consensus 314 ia~~a~a~G~~~~~--VDGnD~--~av~~a~~~A~~~ar~~~~P~LIea~T 360 (364)
..+..+..|...+. +|-.|+ +++.++++.+.+ +.++|+||.+..
T Consensus 59 ~~~~~~~~G~~~~~i~~Dv~~~~~~~v~~~~~~i~~---~~G~dVLVnnAg 106 (157)
T 3gxh_A 59 EGKLVTQAGMDYVYIPVDWQNPKVEDVEAFFAAMDQ---HKGKDVLVHCLA 106 (157)
T ss_dssp HHHHHHHTTCEEEECCCCTTSCCHHHHHHHHHHHHH---TTTSCEEEECSB
T ss_pred HHHHHHHcCCeEEEecCCCCCCCHHHHHHHHHHHHh---cCCCCEEEECCC
Confidence 44455556665543 466666 777777766554 234489988743
No 131
>2dko_A Caspase-3; low barrier hydrogen bond, caspase, drug design, radiation D tetrahedral intermediate, protease; 1.06A {Homo sapiens} PDB: 1nme_A 2h5i_A 2h5j_A 2h65_A 2xyg_A* 2xyh_A 2xyp_A* 2xzd_A 2xzt_A 2y0b_A 3edq_A 1gfw_A 1re1_A* 1pau_A* 1rhk_A* 1rhm_A* 1rhq_A* 1rhr_A* 1rhu_A* 1rhj_A* ...
Probab=22.92 E-value=1.2e+02 Score=25.43 Aligned_cols=56 Identities=9% Similarity=0.086 Sum_probs=36.7
Q ss_pred EEEEEEcCCccccccc----ccccCCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHH
Q 017890 290 VVFICRNNGWAISTNI----SEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAARE 345 (364)
Q Consensus 290 vIfVV~NNg~ais~~~----~~~~~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~ 345 (364)
+.+|+.|..|.-.+.. ......+.+.+.++.+|+.+...+--...++.+.+++..+
T Consensus 18 ~alIinn~~F~~~~~l~~R~Gt~~D~~~L~~~f~~LgF~V~~~~dlt~~em~~~l~~~~~ 77 (146)
T 2dko_A 18 LCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLKYEVRNKNDLTREEIVELMRDVSK 77 (146)
T ss_dssp EEEEEECCCCCGGGTCCCCTTHHHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHH
T ss_pred EEEEEeccccCCCCCcccCCCCHHHHHHHHHHHHHCCCEEEEeeCCCHHHHHHHHHHHHH
Confidence 4555555556533211 1111234577888999999988877889999999988765
No 132
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=22.91 E-value=2.6e+02 Score=24.09 Aligned_cols=83 Identities=11% Similarity=0.061 Sum_probs=53.4
Q ss_pred EEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccccc-------cc-cCCccHHHHHhhcCeEEEEEeCCCH
Q 017890 262 AVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNIS-------EQ-FRSDGIVVKGRAYGIRSIRVDGNDA 333 (364)
Q Consensus 262 vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~-------~~-~~~~~ia~~a~a~G~~~~~VDGnD~ 333 (364)
-|.++|=+..-.+ .-.++...++++.++.-++...+..-.. +. ..+.-..+.|+.+|++++.+.. ..
T Consensus 96 kIavvg~~~~~~~----~~~~~~ll~~~i~~~~~~~~~e~~~~i~~l~~~G~~vvVG~~~~~~~A~~~Gl~~vli~s-g~ 170 (196)
T 2q5c_A 96 ELALIAYKHSIVD----KHEIEAMLGVKIKEFLFSSEDEITTLISKVKTENIKIVVSGKTVTDEAIKQGLYGETINS-GE 170 (196)
T ss_dssp EEEEEEESSCSSC----HHHHHHHHTCEEEEEEECSGGGHHHHHHHHHHTTCCEEEECHHHHHHHHHTTCEEEECCC-CH
T ss_pred cEEEEeCcchhhH----HHHHHHHhCCceEEEEeCCHHHHHHHHHHHHHCCCeEEECCHHHHHHHHHcCCcEEEEec-CH
Confidence 4555565666554 2347778889887776666543321110 01 1122345788999999999873 57
Q ss_pred HHHHHHHHHHHHHhhc
Q 017890 334 LAVYTAVQAAREMAIS 349 (364)
Q Consensus 334 ~av~~a~~~A~~~ar~ 349 (364)
+++.+|+.+|++.++.
T Consensus 171 eSI~~Ai~eA~~l~~~ 186 (196)
T 2q5c_A 171 ESLRRAIEEALNLIEV 186 (196)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8999999999876543
No 133
>1z7w_A Cysteine synthase; transferase; HET: PLP; 2.20A {Arabidopsis thaliana} SCOP: c.79.1.1 PDB: 1z7y_A* 2isq_A*
Probab=22.78 E-value=1.8e+02 Score=26.83 Aligned_cols=68 Identities=15% Similarity=0.163 Sum_probs=38.6
Q ss_pred cccHHHHHHHH-HHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhcCeEEEEEeCCC-HHHHHHHHHHHHHHhhcC
Q 017890 273 EGDFHAALNFA-AVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGND-ALAVYTAVQAAREMAISE 350 (364)
Q Consensus 273 eG~~~EALn~A-a~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~~~~VDGnD-~~av~~a~~~A~~~ar~~ 350 (364)
.|+.--++..+ +..++++++++-.+- + ..-....+.||.+++.+++.. .. ++.+.+.+.+.+.
T Consensus 75 sGN~g~alA~aa~~~G~~~~iv~p~~~-----~-------~~k~~~~~~~GA~V~~~~~~~~~~---~~~~~a~~~~~~~ 139 (322)
T 1z7w_A 75 SGNTGVGLAFTAAAKGYKLIITMPASM-----S-------TERRIILLAFGVELVLTDPAKGMK---GAIAKAEEILAKT 139 (322)
T ss_dssp SSHHHHHHHHHHHHHTCEEEEEEETTS-----C-------HHHHHHHHHTTCEEEEECGGGHHH---HHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHcCCCEEEEeCCCC-----C-------HHHHHHHHHcCCEEEEeCCCCCHH---HHHHHHHHHHHhC
Confidence 34444455554 467899988887651 1 112346678999999888642 22 3344444444444
Q ss_pred CCcEE
Q 017890 351 KRPVL 355 (364)
Q Consensus 351 ~~P~L 355 (364)
.+..+
T Consensus 140 ~~~~~ 144 (322)
T 1z7w_A 140 PNGYM 144 (322)
T ss_dssp TTEEE
T ss_pred CCeEe
Confidence 34443
No 134
>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*
Probab=22.52 E-value=1.7e+02 Score=29.27 Aligned_cols=46 Identities=22% Similarity=0.247 Sum_probs=25.4
Q ss_pred cccHHHHHHHH-HHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhcCeEEEEEeC
Q 017890 273 EGDFHAALNFA-AVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDG 330 (364)
Q Consensus 273 eG~~~EALn~A-a~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~~~~VDG 330 (364)
.|..--|+.+| +..++++++|+-.+- + ..-....++||.+++.+++
T Consensus 121 sGN~g~a~A~~a~~~G~~~~iv~p~~~-----~-------~~k~~~~~~~GA~v~~~~~ 167 (527)
T 3pc3_A 121 SGNTGIGLAMACAVKGYKCIIVMPEKM-----S-------NEKVSALRTLGAKIIRTPT 167 (527)
T ss_dssp SSHHHHHHHHHHHHHTCEEEEEEETTS-----C-------HHHHHHHHHTTCEEEEECT
T ss_pred CCHHHHHHHHHHHHhCCeEEEEEcCCC-----C-------HHHHHHHHHCCCEEEEeCC
Confidence 34444445444 456788777765431 0 1122455677888777764
No 135
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=22.13 E-value=2.8e+02 Score=21.99 Aligned_cols=62 Identities=3% Similarity=0.057 Sum_probs=36.0
Q ss_pred CCCEEEEEEcCCcccccccccccCCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCC
Q 017890 287 EAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKR 352 (364)
Q Consensus 287 ~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~ 352 (364)
+.|+|+|+.--.. ..............++.+|++.+.+...+-..+.+.+....+.+.+.++
T Consensus 111 ~~p~ilv~nK~Dl----~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~ 172 (181)
T 3t5g_A 111 QIPIMLVGNKKDL----HMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILEAEKMDG 172 (181)
T ss_dssp -CCEEEEEECTTC----TTTCCSCHHHHHHHHHHTTCEEEECCTTSHHHHHHHHHHHHHHHHTC--
T ss_pred CCCEEEEEECccc----hhcceecHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHHHHHHhcC
Confidence 5687766642221 1122222334556778889999999877766677777666665554443
No 136
>3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul structural genomics, PSI-2, protein structure initiative; 1.30A {Xylella fastidiosa}
Probab=21.86 E-value=1e+02 Score=23.82 Aligned_cols=36 Identities=11% Similarity=0.325 Sum_probs=26.8
Q ss_pred CCCCeeEEecCCCCcccCCCC------CCCCHHHHHHHHHHH
Q 017890 104 KRVPCFRVLDDNGELIKGSDF------QQVSKEVAVKMYSHM 139 (364)
Q Consensus 104 ~~~~~~rv~~~~g~~~~~~~~------~~~s~e~l~~ly~~M 139 (364)
..+|++-++|.+|+++..... ..++.+++.++.+.+
T Consensus 90 ~~~Pt~~~~d~~G~~~~~~~g~~~~~~~~~~~~~l~~~l~~l 131 (133)
T 3fk8_A 90 DGIPAVVVVNSDGKVRYTTKGGELANARKMSDQGIYDFFAKI 131 (133)
T ss_dssp GCSSEEEEECTTSCEEEECCSCTTTTGGGSCHHHHHHHHHHH
T ss_pred CccceEEEECCCCCEEEEecCCcccccccCCHHHHHHHHHHh
Confidence 678999999999998753211 146888888887754
No 137
>1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19, structural genomics, PSI, protein structure initiative; 1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A
Probab=21.78 E-value=1.3e+02 Score=24.60 Aligned_cols=37 Identities=22% Similarity=0.161 Sum_probs=26.0
Q ss_pred CCCCeeEEecCCCCcccCCCCC---------CCCHHHHHHHHHHHH
Q 017890 104 KRVPCFRVLDDNGELIKGSDFQ---------QVSKEVAVKMYSHMV 140 (364)
Q Consensus 104 ~~~~~~rv~~~~g~~~~~~~~~---------~~s~e~l~~ly~~M~ 140 (364)
..+|++-++|.+|+++....-. ..+.+++++..+.++
T Consensus 102 ~~~Pt~~~~d~~G~~~~~~~G~~~~~~~~~~~~~~~~l~~~l~~~l 147 (164)
T 1sen_A 102 GYIPRILFLDPSGKVHPEIINENGNPSYKYFYVSAEQVVQGMKEAQ 147 (164)
T ss_dssp SCSSEEEEECTTSCBCTTCCCTTSCTTSTTCCCSHHHHHHHHHHHH
T ss_pred CcCCeEEEECCCCCEEEEEeCCCCccchhcccCCHHHHHHHHHHHH
Confidence 4589999999999987643211 267788777776543
No 138
>2nn3_C Caspase-1; cysteine protease, hydrolase; 3.00A {Spodoptera frugiperda}
Probab=21.78 E-value=1.4e+02 Score=28.31 Aligned_cols=57 Identities=12% Similarity=0.177 Sum_probs=38.2
Q ss_pred CEEEEEEcCCcccc---cccccccCCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHH
Q 017890 289 PVVFICRNNGWAIS---TNISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAARE 345 (364)
Q Consensus 289 PvIfVV~NNg~ais---~~~~~~~~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~ 345 (364)
.+.+||.|..|... .+.........+.+.++.+|+.+....--+..++.+++++..+
T Consensus 61 g~aLIInN~~F~~~~l~~R~Gt~~Da~~L~~~f~~LGF~V~~~~dlt~~em~~~l~~f~~ 120 (310)
T 2nn3_C 61 GMAIIFNHEHFDIHSLKSRTGTNVDSDNLSKVLKTLGFKVTVFPNLKSEEINKFIQQTAE 120 (310)
T ss_dssp CEEEEEECCCCSSTTCCCCTTHHHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHS
T ss_pred CEEEEEechhcCCCCcccCCCCHHHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHHH
Confidence 35666666667532 1111112234677888999999998887889999999987654
No 139
>2bzr_A Propionyl-COA carboxylase beta chain 5; fatty acid biosynthesis, accase, ligase, transferase; 2.2A {Mycobacterium tuberculosis} PDB: 2a7s_A
Probab=21.77 E-value=92 Score=31.97 Aligned_cols=13 Identities=8% Similarity=0.082 Sum_probs=9.0
Q ss_pred CCEEEEEEcCCcc
Q 017890 288 APVVFICRNNGWA 300 (364)
Q Consensus 288 LPvIfVV~NNg~a 300 (364)
+|.|.++.+...+
T Consensus 181 iP~Isvv~gp~~G 193 (548)
T 2bzr_A 181 IPQISLIMGAAAG 193 (548)
T ss_dssp SCEEEEECSEEES
T ss_pred CcEEEEecCCCch
Confidence 5777777776654
No 140
>2q3b_A Cysteine synthase A; pyridoxal-5'-phosphate, sulphur metabolism, cysteine biosynthesis, transferase; HET: LLP; 1.80A {Mycobacterium tuberculosis} PDB: 2q3c_A* 2q3d_A* 3rr2_A
Probab=21.72 E-value=3.8e+02 Score=24.41 Aligned_cols=47 Identities=23% Similarity=0.168 Sum_probs=29.7
Q ss_pred cccHHHHHHHH-HHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhcCeEEEEEeCC
Q 017890 273 EGDFHAALNFA-AVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGN 331 (364)
Q Consensus 273 eG~~~EALn~A-a~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~~~~VDGn 331 (364)
.|+.--++..+ +..++++++++..+- + ..-....+.||.+++.+++.
T Consensus 75 sGN~g~alA~~a~~~G~~~~iv~p~~~-----~-------~~k~~~~~~~Ga~v~~~~~~ 122 (313)
T 2q3b_A 75 SGNTGIALAMVCAARGYRCVLTMPETM-----S-------LERRMLLRAYGAELILTPGA 122 (313)
T ss_dssp SSHHHHHHHHHHHHHTCEEEEEEETTS-----C-------HHHHHHHHHTTCEEEEECGG
T ss_pred CCHHHHHHHHHHHHcCCcEEEEECCCC-----C-------HHHHHHHHHCCCEEEEeCCC
Confidence 34444455544 467899988887651 1 11234567899999988864
No 141
>1m72_A Caspase-1; caspase, cysteine protease, hydrolase-hydrolase inhibitor CO; 2.30A {Spodoptera frugiperda} SCOP: c.17.1.1 PDB: 3sip_B
Probab=21.59 E-value=94 Score=28.70 Aligned_cols=56 Identities=13% Similarity=0.190 Sum_probs=37.2
Q ss_pred EEEEEEcCCcccc---cccccccCCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHH
Q 017890 290 VVFICRNNGWAIS---TNISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAARE 345 (364)
Q Consensus 290 vIfVV~NNg~ais---~~~~~~~~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~ 345 (364)
+.+||.|..|... ...........+.+..+.+|+.+....--+..++.+++++..+
T Consensus 34 ~aLIInn~~f~~~~l~~R~g~~~Da~~L~~~f~~LGF~V~~~~dlt~~em~~~l~~~~~ 92 (272)
T 1m72_A 34 MAIIFNHEHFDIHSLKSRTGTNVDSDNLSKVLKTLGFKVTVFPNLKSEEINKFIQQTAE 92 (272)
T ss_dssp EEEEEECCCCSSTTCCCCTTHHHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHT
T ss_pred EEEEEechhcCCCCcccCCCCHHHHHHHHHHHHHCCCEEEEecCcCHHHHHHHHHHHHH
Confidence 4555555567532 1111112234677888999999998887889999999987653
No 142
>1qtn_A Caspase-8; apoptosis, dithiane-DIOL, caspase, cysteine-protease, hydrol hydrolase inhibitor complex; 1.20A {Homo sapiens} SCOP: c.17.1.1 PDB: 3kjn_A* 3kjq_A* 2y1l_A 2c2z_A 1qdu_A* 1f9e_A*
Probab=21.58 E-value=1.7e+02 Score=24.88 Aligned_cols=34 Identities=6% Similarity=0.012 Sum_probs=28.1
Q ss_pred ccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHH
Q 017890 312 DGIVVKGRAYGIRSIRVDGNDALAVYTAVQAARE 345 (364)
Q Consensus 312 ~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~ 345 (364)
..+.+.++.+|+.+...+--...++.+.+++..+
T Consensus 58 ~~L~~~f~~LgF~V~~~~dlt~~em~~~l~~~~~ 91 (164)
T 1qtn_A 58 GALTTTFEELHFEIKPHDDCTVEQIYEILKIYQL 91 (164)
T ss_dssp HHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHHH
Confidence 4567788999999988887789999999988743
No 143
>2ju5_A Thioredoxin disulfide isomerase; protein, oxidoreductase; NMR {Chlamydophila pneumoniae}
Probab=21.30 E-value=92 Score=25.20 Aligned_cols=38 Identities=13% Similarity=0.170 Sum_probs=25.9
Q ss_pred CCCCCCeeEEecCCCCcccCCCCCCCCHHHHHHHHHHH
Q 017890 102 SEKRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHM 139 (364)
Q Consensus 102 ~~~~~~~~rv~~~~g~~~~~~~~~~~s~e~l~~ly~~M 139 (364)
....+|++-++|.+|+++.......-+.+++++..+.+
T Consensus 113 ~v~~~Pt~~~~d~~G~~~~~~G~~~~~~~~l~~~l~~~ 150 (154)
T 2ju5_A 113 KVTGFPELVFIDAEGKQLARMGFEPGGGAAYVSKVKSA 150 (154)
T ss_dssp TCCSSSEEEEECTTCCEEEEECCCTTCHHHHHHHHHHH
T ss_pred CCCCCCEEEEEcCCCCEEEEecCCCCCHHHHHHHHHHH
Confidence 34679999999999999764201122677777766654
No 144
>3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis}
Probab=21.20 E-value=75 Score=24.56 Aligned_cols=35 Identities=11% Similarity=0.244 Sum_probs=26.8
Q ss_pred CCCCCCeeEEecCCCCcccCCCCCCCCHHHHHHHHHHHH
Q 017890 102 SEKRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMV 140 (364)
Q Consensus 102 ~~~~~~~~rv~~~~g~~~~~~~~~~~s~e~l~~ly~~M~ 140 (364)
....+|.+-|+|.+|+++... .+.+++.+..+.++
T Consensus 111 ~v~~~P~~~lid~~G~i~~~~----~~~~~l~~~l~~ll 145 (148)
T 3fkf_A 111 AILTLPTNILLSPTGKILARD----IQGEALTGKLKELL 145 (148)
T ss_dssp TCCSSSEEEEECTTSBEEEES----CCHHHHHHHHHHHC
T ss_pred CCCCcCEEEEECCCCeEEEec----CCHHHHHHHHHHHH
Confidence 346789999999999998754 27888777776543
No 145
>3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B}
Probab=20.83 E-value=1.1e+02 Score=24.21 Aligned_cols=37 Identities=8% Similarity=-0.084 Sum_probs=27.7
Q ss_pred CCCCCeeEEecCCCCcccCCCCCCCCHHHHHHHHHHHH
Q 017890 103 EKRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMV 140 (364)
Q Consensus 103 ~~~~~~~rv~~~~g~~~~~~~~~~~s~e~l~~ly~~M~ 140 (364)
...+|.+=|+|.+|+++... .-..+.+++.+..+.+.
T Consensus 103 v~~~P~~~lid~~G~i~~~~-~g~~~~~~l~~~l~~l~ 139 (151)
T 3raz_A 103 VGVLPFTVVEAPKCGYRQTI-TGEVNEKSLTDAVKLAH 139 (151)
T ss_dssp SCCSSEEEEEETTTTEEEEC-CSCCCHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCcEEEEE-CCCCCHHHHHHHHHHHH
Confidence 46789999999999987643 34568888887776543
No 146
>1vim_A Hypothetical protein AF1796; structural genomics, unknown function; 1.36A {Archaeoglobus fulgidus} SCOP: c.80.1.3
Probab=20.68 E-value=1.7e+02 Score=24.99 Aligned_cols=40 Identities=15% Similarity=0.179 Sum_probs=32.3
Q ss_pred cCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCC
Q 017890 257 KKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNG 298 (364)
Q Consensus 257 ~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg 298 (364)
+++.++|++..-|...+ ..+++..|...+.|+|.|..|..
T Consensus 88 ~~~DvvI~iS~SG~t~~--~i~~~~~ak~~g~~vI~IT~~~~ 127 (200)
T 1vim_A 88 TDQDVLVGISGSGETTS--VVNISKKAKDIGSKLVAVTGKRD 127 (200)
T ss_dssp CTTCEEEEECSSSCCHH--HHHHHHHHHHHTCEEEEEESCTT
T ss_pred CCCCEEEEEeCCCCcHH--HHHHHHHHHHCCCeEEEEECCCC
Confidence 45668888888888764 77889999999999998887654
No 147
>3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Bacteroides fragilis}
Probab=20.22 E-value=88 Score=24.19 Aligned_cols=33 Identities=18% Similarity=0.247 Sum_probs=26.0
Q ss_pred CCCCCeeEEecCCCCcccCCCCCCCCHHHHHHHHHHH
Q 017890 103 EKRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHM 139 (364)
Q Consensus 103 ~~~~~~~rv~~~~g~~~~~~~~~~~s~e~l~~ly~~M 139 (364)
...+|.+=++|.+|+++.. .++.+++.++.+.+
T Consensus 107 v~~~P~~~lid~~G~i~~~----~~~~~~l~~~l~~~ 139 (142)
T 3ewl_A 107 IRATPTIYLLDGRKRVILK----DTSMEQLIDYLATQ 139 (142)
T ss_dssp CCSSSEEEEECTTCBEEEC----SCCHHHHHHHHHC-
T ss_pred CCCCCeEEEECCCCCEEec----CCCHHHHHHHHHHH
Confidence 4578999999999999874 47888888776653
Done!