Query 017891
Match_columns 364
No_of_seqs 142 out of 188
Neff 4.7
Searched_HMMs 46136
Date Fri Mar 29 04:19:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017891.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017891hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2656 DNA methyltransferase 100.0 3.6E-81 7.9E-86 614.3 21.9 326 1-364 93-445 (445)
2 PF05499 DMAP1: DNA methyltran 100.0 5E-35 1.1E-39 264.3 9.5 166 136-308 1-173 (176)
3 cd00167 SANT 'SWI3, ADA2, N-Co 97.7 2.8E-05 6.2E-10 53.1 2.4 43 43-86 1-44 (45)
4 PF00249 Myb_DNA-binding: Myb- 97.5 5.2E-05 1.1E-09 54.7 1.4 44 43-86 3-47 (48)
5 smart00717 SANT SANT SWI3, AD 97.4 9.1E-05 2E-09 51.2 2.5 45 42-87 2-47 (49)
6 PF13921 Myb_DNA-bind_6: Myb-l 97.1 0.00026 5.6E-09 52.8 1.5 41 44-85 1-41 (60)
7 PLN03212 Transcription repress 96.5 0.0062 1.3E-07 58.9 6.4 63 33-96 66-132 (249)
8 PLN03091 hypothetical protein; 96.3 0.0061 1.3E-07 63.2 5.7 64 33-97 55-122 (459)
9 PLN03212 Transcription repress 82.0 0.94 2E-05 44.1 2.3 51 38-88 22-73 (249)
10 PF05499 DMAP1: DNA methyltran 76.2 2.9 6.4E-05 38.9 3.5 56 198-253 76-138 (176)
11 PF13837 Myb_DNA-bind_4: Myb/S 75.8 0.91 2E-05 35.8 0.1 56 42-97 2-74 (90)
12 cd05560 Xcc1710_like Xcc1710_l 64.8 5 0.00011 34.0 2.2 32 242-274 69-100 (109)
13 cd05126 Mth938 Mth938 domain. 64.5 5.2 0.00011 34.5 2.3 32 242-274 76-107 (117)
14 cd00248 Mth938-like Mth938-lik 63.8 5.9 0.00013 33.5 2.5 32 242-274 69-100 (109)
15 PLN03091 hypothetical protein; 60.9 4.4 9.5E-05 42.6 1.4 51 37-87 10-61 (459)
16 PF04430 DUF498: Protein of un 59.5 5.2 0.00011 33.6 1.4 32 242-274 70-101 (110)
17 cd05125 Mth938_2P1-like Mth938 53.4 10 0.00022 32.7 2.2 31 242-273 71-101 (114)
18 PHA00649 hypothetical protein 50.9 42 0.0009 27.2 5.1 39 242-287 17-55 (83)
19 PF08963 DUF1878: Protein of u 50.6 8.1 0.00018 33.6 1.2 26 35-60 29-54 (113)
20 COG5114 Histone acetyltransfer 41.5 13 0.00029 37.9 1.2 46 40-86 62-108 (432)
21 COG1168 MalY Bifunctional PLP- 39.3 23 0.00049 36.8 2.5 26 43-70 174-199 (388)
22 KOG0048 Transcription factor, 35.4 43 0.00092 31.9 3.6 59 35-94 52-115 (238)
23 TIGR01557 myb_SHAQKYF myb-like 33.3 35 0.00076 25.9 2.2 41 43-83 5-50 (57)
24 PRK14841 undecaprenyl pyrophos 31.7 36 0.00079 32.8 2.5 79 24-119 50-139 (233)
25 PF03993 DUF349: Domain of Unk 31.6 91 0.002 23.8 4.3 19 77-95 1-19 (77)
26 KOG0457 Histone acetyltransfer 31.1 32 0.00069 36.3 2.1 47 39-86 70-117 (438)
27 cd03769 SR_IS607_transposase_l 29.5 60 0.0013 28.0 3.3 54 44-97 74-130 (134)
28 PRK14842 undecaprenyl pyrophos 29.0 43 0.00092 32.6 2.5 39 24-69 55-104 (241)
29 cd03007 PDI_a_ERp29_N PDIa fam 28.9 57 0.0012 28.2 3.0 35 46-81 62-110 (116)
30 PRK14838 undecaprenyl pyrophos 27.2 52 0.0011 32.0 2.7 39 24-69 57-104 (242)
31 KOG0048 Transcription factor, 26.7 48 0.001 31.6 2.4 36 42-77 10-46 (238)
32 TIGR00055 uppS undecaprenyl di 26.2 55 0.0012 31.5 2.7 39 24-69 46-95 (226)
33 KOG2656 DNA methyltransferase 25.9 15 0.00034 38.2 -1.2 66 216-290 374-440 (445)
34 COG0403 GcvP Glycine cleavage 24.9 32 0.00069 36.4 0.8 23 324-346 276-302 (450)
35 PF13873 Myb_DNA-bind_5: Myb/S 24.8 68 0.0015 24.7 2.5 49 41-92 2-50 (78)
36 PRK06620 hypothetical protein; 24.4 1.2E+02 0.0026 28.3 4.6 41 43-83 96-136 (214)
37 PRK08068 transaminase; Reviewe 24.3 69 0.0015 31.8 3.1 27 43-70 183-209 (389)
38 PF08986 DUF1889: Domain of un 23.3 40 0.00088 29.0 1.0 26 232-257 41-66 (119)
39 PF15058 Speriolin_N: Sperioli 23.3 2.2E+02 0.0049 27.2 6.0 81 266-353 5-89 (200)
40 cd00475 CIS_IPPS Cis (Z)-Isopr 23.1 69 0.0015 30.6 2.7 39 24-69 47-96 (221)
41 PRK14827 undecaprenyl pyrophos 23.0 67 0.0014 32.3 2.7 39 24-69 114-163 (296)
42 PF03776 MinE: Septum formatio 22.8 1.3E+02 0.0027 23.7 3.7 34 61-94 9-45 (70)
43 PRK14829 undecaprenyl pyrophos 22.6 71 0.0015 31.0 2.7 79 24-119 61-150 (243)
44 KOG1602 Cis-prenyltransferase 22.4 70 0.0015 31.8 2.6 78 24-118 83-174 (271)
45 COG1730 GIM5 Predicted prefold 22.4 1.5E+02 0.0033 26.8 4.6 66 266-331 20-90 (145)
46 cd01174 ribokinase Ribokinase 22.0 1.6E+02 0.0036 27.4 5.0 49 20-68 171-219 (292)
47 cd04765 HTH_MlrA-like_sg2 Heli 21.8 1.6E+02 0.0035 24.4 4.3 34 242-278 62-95 (99)
48 COG5259 RSC8 RSC chromatin rem 21.3 44 0.00096 35.7 1.1 46 40-86 278-323 (531)
49 PRK14840 undecaprenyl pyrophos 21.2 73 0.0016 31.2 2.5 39 24-69 69-118 (250)
50 PTZ00349 dehydrodolichyl dipho 21.2 78 0.0017 32.2 2.7 39 24-69 66-118 (322)
51 PHA02550 32 single-stranded DN 21.1 66 0.0014 32.4 2.2 62 16-95 188-249 (304)
52 PTZ00376 aspartate aminotransf 20.7 89 0.0019 31.3 3.1 28 43-71 192-219 (404)
53 cd01992 PP-ATPase N-terminal d 20.7 2.9E+02 0.0063 24.1 6.1 34 46-79 44-79 (185)
54 PRK06855 aminotransferase; Val 20.4 89 0.0019 31.9 3.0 25 43-69 187-211 (433)
55 PRK14837 undecaprenyl pyrophos 20.3 76 0.0016 30.7 2.3 39 24-69 53-102 (230)
56 PRK14833 undecaprenyl pyrophos 20.1 85 0.0018 30.4 2.6 39 24-69 51-100 (233)
No 1
>KOG2656 consensus DNA methyltransferase 1-associated protein-1 [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=3.6e-81 Score=614.28 Aligned_cols=326 Identities=40% Similarity=0.551 Sum_probs=250.2
Q ss_pred CCccccCCCCCCCCCCCccccccccccccCCHHHHHhhhCCCCCChHHHHHHHHHhhhcCcceeEEecCCC-----CCCC
Q 017891 1 MNWVRVVNGVPPTGDYSFAKYNKSVDVVKYTDEEYEKYLTDPMWTKEETDQLFELCERFDLRFIVIADRFP-----SSRT 75 (364)
Q Consensus 1 ~HWvr~~~~~~~~~~y~FaKfN~~v~ip~ytdeEY~~~L~d~~Wt~eETd~LfdLc~~fDLRw~VI~DRy~-----~~Rt 75 (364)
|||||+.|. .+||||||||++|+||.|||+||+.||.|+.||++|||||||||++||||||||+|||+ .+||
T Consensus 93 ~HWvr~~d~---~~dypfakfNk~vdipsYt~eEYe~~l~dn~WskeETD~LF~lck~fDLRf~VIaDRyd~qq~~~sRT 169 (445)
T KOG2656|consen 93 HHWVRVGDT---PKDYPFAKFNKHVDIPSYTDEEYEAHLNDNSWSKEETDYLFDLCKRFDLRFFVIADRYDNQQYKKSRT 169 (445)
T ss_pred EeeeeccCC---CCCCchhhhccccCccccchHHHHHhhccccccHHHHHHHHHHHHhcCeeEEEEeeccchhhcccccc
Confidence 799999554 78999999999999999999999999999999999999999999999999999999985 4799
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCCCCCccCCCCChHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017891 76 VEELKDRYYGVSRAILIARAPSPTDVSGHPLVKDPYNVSQEVERKRALSMVLSQTKHQERKDAEVLAEAKRITDSRMASR 155 (364)
Q Consensus 76 vEdLK~RyY~V~~~l~~~r~~~~~~~~~~~l~~~~fd~~~E~~RK~~L~~l~~RT~~q~~EEe~L~~E~krie~~R~~ek 155 (364)
|||||+|||+||++|+.+|++++.+. |-.++||++||++||+||++||+||++||+||++|++|+|+||+ |++++
T Consensus 170 vEdLKeRyY~v~r~l~kAr~~s~sdl----lk~~~yd~e~Er~RKk~L~~L~sRt~~qvaEEe~Ll~E~KkiEa-rkke~ 244 (445)
T KOG2656|consen 170 VEDLKERYYSVCRKLLKARAPSNSDL----LKSLVYDAEHERERKKYLERLLSRTPEQVAEEEALLVELKKIEA-RKKER 244 (445)
T ss_pred HHHHHHHHHHHHHHHHHccCCCchhh----hhccccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH-Hhhhh
Confidence 99999999999999999999875551 23479999999999999999999999999999999999999995 66777
Q ss_pred hccCCCCC-ccccCCCcccccccccCCC--------------CCCCCCCCCCCcccCCCcccchhhhhhhhhhhccceee
Q 017891 156 AAEEPEMP-VASHVGSESADRAVVLGDT--------------VSPSSNIQLPSATVVPSTSIIADSASTLASLRMLRVYL 220 (364)
Q Consensus 156 ~~~e~~l~-~~s~~~~~~~e~~~~p~~~--------------~~~~~~~~~P~a~~~~s~~~~~~~~~~~~~lr~~gvyL 220 (364)
..+.+++. .+++++.+..+...+|+.+ +.+...++.|.+...+|++.| ..++..++.|
T Consensus 245 ~~~~~~l~rlld~ad~~i~~~stS~~~~~~~~~~~a~kt~~k~~~a~v~a~~~~s~~ss~~~F-------~~~~~~l~tl 317 (445)
T KOG2656|consen 245 LAERQDLLRLLDSADGDITQYSTSPGMSSLENALLAKKTRQKKHEANVPASPRESWMSSGIKF-------ADLRVALVTL 317 (445)
T ss_pred hhhhHHHHHhhhcccccccccccChhHHHHHHHHhhhhhhcccccccCccccchhhhhhhhhc-------ccchhhhhcc
Confidence 77666642 3444432221111111000 011111112211222333323 3344455666
Q ss_pred ehHhHHHHHHhhhccchhhHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccc-
Q 017891 221 RTYALEQMVQAASSSAGLRTIKRVEQALQELGVNLKPKVPTKAVCAEHLELRKEILTLLNLQKQLQYKEAEGSSYRDGS- 299 (364)
Q Consensus 221 Rs~~l~~~~qa~~~~~G~k~~K~Ie~~L~ELgv~~kP~mPT~~Vc~~f~eLR~~Iv~LLeLKK~l~k~E~El~~lr~~~- 299 (364)
|++++ . .++++|++++|+++|+|++|||.+.| .||+.||..|||||++|++||+|++++..|++|++++||++
T Consensus 318 r~q~m---~--~panvgqrkiK~~EQ~lq~~~v~~sp-~pte~l~~~fnElrs~vvtl~eL~~~l~~~~~e~~s~k~~~~ 391 (445)
T KOG2656|consen 318 RSQRM---K--QPANVGQRKIKRLEQELQELGVRLSP-APTEQLCKSFNELRSDVVTLLELSPALYLCEYELSSLKHALN 391 (445)
T ss_pred chhhc---c--CccccchhhhHHHHHHHHHhccCCCC-CCHHHHHHHHHHHHHHHHHHhhccHhhhhhhhhhhhhhhhhh
Confidence 66655 3 67789999999999999999999999 99999999999999999999999999999999999999998
Q ss_pred ccCCCCCCccccccCCCCCcccccCcCCCcccccccccccc-----CCCCCCCCCCCCCCCCccc-ccCCC
Q 017891 300 YIDMPGTPKRSQRAGDQDRTFVPESINFGGERVGKRDQKRK-----GPGRLSEAPSSPAHKRPRK-KASDL 364 (364)
Q Consensus 300 ~a~~P~tp~~~~r~~~~~~~~~~~~~~~~~~r~~~~~~krk-----~~~~~~~~~~~~~~~~~~~-~~~~~ 364 (364)
++++++. +.++...++-+++.+-++|++ +| +.-||++|+|+|+ +||++
T Consensus 392 ~~~~~~~-------------~l~~P~~p~~~~~~~~e~~~~~~~~~~p----~g~~~~~h~~kr~~~as~~ 445 (445)
T KOG2656|consen 392 EALAILQ-------------ELSLPSRPVLPPFDVMERKESTLKKIGP----LGIPSKKHVRKREAGASIT 445 (445)
T ss_pred hhhhhhh-------------hcCCCCCCCCCCcchhhhhhhhcccCCC----CCCCcccccchhhcccccC
Confidence 5444332 333333333344444444433 44 2345999999999 99975
No 2
>PF05499 DMAP1: DNA methyltransferase 1-associated protein 1 (DMAP1); InterPro: IPR008468 DNA methylation can contribute to transcriptional silencing through several transcriptionally repressive complexes, which include methyl-CpG binding domain proteins (MBDs) and histone deacetylases (HDACs). The chief enzyme that maintains mammalian DNA methylation, DNMT1, can also establish a repressive transcription complex. The non-catalytic N terminus of DNMT1 binds to HDAC2 and DMAP1 (for DNMT1 associated protein), and can mediate transcriptional repression. DMAP1 has intrinsic transcription repressive activity, and binds to the transcriptional co-repressor TSG101. DMAP1 is targeted to replication foci through interaction with the far N terminus of DNMT1 throughout S phase, whereas HDAC2 joins DNMT1 and DMAP1 only during late S phase, providing a platform for how histones may become deacetylated in heterochromatin following replication [].; GO: 0045892 negative regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=100.00 E-value=5e-35 Score=264.33 Aligned_cols=166 Identities=28% Similarity=0.396 Sum_probs=120.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCCccccCCCcccccccccC---CCCCCCCCCCCCCcccC---CCcccchh-hhh
Q 017891 136 KDAEVLAEAKRITDSRMASRAAEEPEMPVASHVGSESADRAVVLG---DTVSPSSNIQLPSATVV---PSTSIIAD-SAS 208 (364)
Q Consensus 136 EEe~L~~E~krie~~R~~ek~~~e~~l~~~s~~~~~~~e~~~~p~---~~~~~~~~~~~P~a~~~---~s~~~~~~-~~~ 208 (364)
||++|++|||+||+ |+++|+++.+||+.+.++.........+.. ......+...+|.++.. ......+. +..
T Consensus 1 EEe~Li~ELrKIE~-RKkEREKK~qDLqkLit~ad~~~~~~~~~a~~rk~ekk~~kKk~~~~~~~~~~~~~~~v~~~agi 79 (176)
T PF05499_consen 1 EEEMLIAELRKIEA-RKKEREKKTQDLQKLITAADQQPTPATNTAEARKTEKKSSKKKLPQKARPSKKKESPAVPETAGI 79 (176)
T ss_pred CHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhccccCCCCCccHhhhhhhhccCCcccccCCCcccccccccchhhhcc
Confidence 79999999999995 889999999998765443221100000000 00000001111211100 00001111 123
Q ss_pred hhhhhhccceeeehHhHHHHHHhhhccchhhHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017891 209 TLASLRMLRVYLRTYALEQMVQAASSSAGLRTIKRVEQALQELGVNLKPKVPTKAVCAEHLELRKEILTLLNLQKQLQYK 288 (364)
Q Consensus 209 ~~~~lr~~gvyLRs~~l~~~~qa~~~~~G~k~~K~Ie~~L~ELgv~~kP~mPT~~Vc~~f~eLR~~Iv~LLeLKK~l~k~ 288 (364)
.+..++++||||||++| ++|+++|++++|+|+++|+||||+++| |||+.||+.||+||++||+|+|||+++++|
T Consensus 80 kFpd~k~~GV~LRSq~m-----klp~~vGqKk~K~iEq~L~elgv~~~P-mPTe~Ic~~fneLRsdivlL~eLk~a~~~~ 153 (176)
T PF05499_consen 80 KFPDFKSAGVHLRSQRM-----KLPSSVGQKKTKAIEQFLQELGVDLNP-MPTEEICQEFNELRSDIVLLYELKQALQNC 153 (176)
T ss_pred ccccccCCceEeeeccc-----ccCcchhhHHHHHHHHHHHHcCCCCCC-CChHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34456788999999988 489999999999999999999999999 999999999999999999999999999999
Q ss_pred HHhhhhhccccccCCCCCCc
Q 017891 289 EAEGSSYRDGSYIDMPGTPK 308 (364)
Q Consensus 289 E~El~~lr~~~~a~~P~tp~ 308 (364)
|+|+++|||++++++||.+.
T Consensus 154 E~El~~lr~r~eal~~gk~~ 173 (176)
T PF05499_consen 154 EYELQSLRHRYEALAPGKTL 173 (176)
T ss_pred HHHHHHHHHHHHhhCCCCCC
Confidence 99999999999999999875
No 3
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=97.67 E-value=2.8e-05 Score=53.07 Aligned_cols=43 Identities=28% Similarity=0.594 Sum_probs=40.0
Q ss_pred CCChHHHHHHHHHhhhcC-cceeEEecCCCCCCCHHHHHHHHHHH
Q 017891 43 MWTKEETDQLFELCERFD-LRFIVIADRFPSSRTVEELKDRYYGV 86 (364)
Q Consensus 43 ~Wt~eETd~LfdLc~~fD-LRw~VI~DRy~~~RtvEdLK~RyY~V 86 (364)
.||.+|...|+.+|+.|+ ..|-.|+..++. ||..+++.|||.+
T Consensus 1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~~~~~-rs~~~~~~~~~~~ 44 (45)
T cd00167 1 PWTEEEDELLLEAVKKYGKNNWEKIAKELPG-RTPKQCRERWRNL 44 (45)
T ss_pred CCCHHHHHHHHHHHHHHCcCCHHHHHhHcCC-CCHHHHHHHHHHh
Confidence 499999999999999999 999999998865 9999999999975
No 4
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=97.45 E-value=5.2e-05 Score=54.70 Aligned_cols=44 Identities=32% Similarity=0.669 Sum_probs=41.2
Q ss_pred CCChHHHHHHHHHhhhcCcc-eeEEecCCCCCCCHHHHHHHHHHH
Q 017891 43 MWTKEETDQLFELCERFDLR-FIVIADRFPSSRTVEELKDRYYGV 86 (364)
Q Consensus 43 ~Wt~eETd~LfdLc~~fDLR-w~VI~DRy~~~RtvEdLK~RyY~V 86 (364)
.||.+|.+.|.++++.|+-. |-.|++.++..||..+++.|||..
T Consensus 3 ~Wt~eE~~~l~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~~~~~~ 47 (48)
T PF00249_consen 3 PWTEEEDEKLLEAVKKYGKDNWKKIAKRMPGGRTAKQCRSRYQNL 47 (48)
T ss_dssp SS-HHHHHHHHHHHHHSTTTHHHHHHHHHSSSSTHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCcHHHHHHHHcCCCCCHHHHHHHHHhh
Confidence 69999999999999999999 999999999999999999999964
No 5
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=97.44 E-value=9.1e-05 Score=51.17 Aligned_cols=45 Identities=31% Similarity=0.609 Sum_probs=41.6
Q ss_pred CCCChHHHHHHHHHhhhcC-cceeEEecCCCCCCCHHHHHHHHHHHH
Q 017891 42 PMWTKEETDQLFELCERFD-LRFIVIADRFPSSRTVEELKDRYYGVS 87 (364)
Q Consensus 42 ~~Wt~eETd~LfdLc~~fD-LRw~VI~DRy~~~RtvEdLK~RyY~V~ 87 (364)
..||.+|...|..++..|+ .+|-.|+..++ .||..+++.|||.+-
T Consensus 2 ~~Wt~~E~~~l~~~~~~~g~~~w~~Ia~~~~-~rt~~~~~~~~~~~~ 47 (49)
T smart00717 2 GEWTEEEDELLIELVKKYGKNNWEKIAKELP-GRTAEQCRERWNNLL 47 (49)
T ss_pred CCCCHHHHHHHHHHHHHHCcCCHHHHHHHcC-CCCHHHHHHHHHHHc
Confidence 4799999999999999999 99999998886 899999999999864
No 6
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A ....
Probab=97.06 E-value=0.00026 Score=52.84 Aligned_cols=41 Identities=32% Similarity=0.647 Sum_probs=36.6
Q ss_pred CChHHHHHHHHHhhhcCcceeEEecCCCCCCCHHHHHHHHHH
Q 017891 44 WTKEETDQLFELCERFDLRFIVIADRFPSSRTVEELKDRYYG 85 (364)
Q Consensus 44 Wt~eETd~LfdLc~~fDLRw~VI~DRy~~~RtvEdLK~RyY~ 85 (364)
||.+|.+.|+.|+..|+-.|--|+..+ +.||..+++.||+.
T Consensus 1 WT~eEd~~L~~~~~~~g~~W~~Ia~~l-~~Rt~~~~~~r~~~ 41 (60)
T PF13921_consen 1 WTKEEDELLLELVKKYGNDWKKIAEHL-GNRTPKQCRNRWRN 41 (60)
T ss_dssp S-HHHHHHHHHHHHHHTS-HHHHHHHS-TTS-HHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCcCHHHHHHHH-CcCCHHHHHHHHHH
Confidence 999999999999999999999999998 48999999999999
No 7
>PLN03212 Transcription repressor MYB5; Provisional
Probab=96.48 E-value=0.0062 Score=58.90 Aligned_cols=63 Identities=25% Similarity=0.339 Sum_probs=54.1
Q ss_pred HHHHhhhC----CCCCChHHHHHHHHHhhhcCcceeEEecCCCCCCCHHHHHHHHHHHHHHHHHhcCC
Q 017891 33 EEYEKYLT----DPMWTKEETDQLFELCERFDLRFIVIADRFPSSRTVEELKDRYYGVSRAILIARAP 96 (364)
Q Consensus 33 eEY~~~L~----d~~Wt~eETd~LfdLc~~fDLRw~VI~DRy~~~RtvEdLK~RyY~V~~~l~~~r~~ 96 (364)
+=|..||. ...||.||-+.|+++...|+=+|..|+..+ ..||--++|.|||++.++.+..+.-
T Consensus 66 eRW~N~L~P~I~kgpWT~EED~lLlel~~~~GnKWs~IAk~L-pGRTDnqIKNRWns~LrK~l~r~~i 132 (249)
T PLN03212 66 LRWMNYLRPSVKRGGITSDEEDLILRLHRLLGNRWSLIAGRI-PGRTDNEIKNYWNTHLRKKLLRQGI 132 (249)
T ss_pred HHHHHhhchhcccCCCChHHHHHHHHHHHhccccHHHHHhhc-CCCCHHHHHHHHHHHHhHHHHhcCC
Confidence 33667764 468999999999999999999999999876 5699999999999999998776653
No 8
>PLN03091 hypothetical protein; Provisional
Probab=96.31 E-value=0.0061 Score=63.16 Aligned_cols=64 Identities=22% Similarity=0.337 Sum_probs=55.2
Q ss_pred HHHHhhhC----CCCCChHHHHHHHHHhhhcCcceeEEecCCCCCCCHHHHHHHHHHHHHHHHHhcCCC
Q 017891 33 EEYEKYLT----DPMWTKEETDQLFELCERFDLRFIVIADRFPSSRTVEELKDRYYGVSRAILIARAPS 97 (364)
Q Consensus 33 eEY~~~L~----d~~Wt~eETd~LfdLc~~fDLRw~VI~DRy~~~RtvEdLK~RyY~V~~~l~~~r~~~ 97 (364)
+=|..||. ...||+||-..|++|...|+=+|.-|+..+ ..||--++|.|||.+.++.++.+...
T Consensus 55 ERW~NyLdP~IkKgpWT~EED~lLLeL~k~~GnKWskIAk~L-PGRTDnqIKNRWnslLKKklr~~~I~ 122 (459)
T PLN03091 55 LRWINYLRPDLKRGTFSQQEENLIIELHAVLGNRWSQIAAQL-PGRTDNEIKNLWNSCLKKKLRQRGID 122 (459)
T ss_pred HHHHhccCCcccCCCCCHHHHHHHHHHHHHhCcchHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHcCCC
Confidence 44666664 458999999999999999999999999765 68999999999999999998877543
No 9
>PLN03212 Transcription repressor MYB5; Provisional
Probab=82.00 E-value=0.94 Score=44.15 Aligned_cols=51 Identities=20% Similarity=0.221 Sum_probs=44.8
Q ss_pred hhCCCCCChHHHHHHHHHhhhcC-cceeEEecCCCCCCCHHHHHHHHHHHHH
Q 017891 38 YLTDPMWTKEETDQLFELCERFD-LRFIVIADRFPSSRTVEELKDRYYGVSR 88 (364)
Q Consensus 38 ~L~d~~Wt~eETd~LfdLc~~fD-LRw~VI~DRy~~~RtvEdLK~RyY~V~~ 88 (364)
-|+-..||.||-..|..++++|+ -+|-.|+-+.+..||--..++||..+-+
T Consensus 22 glKRg~WT~EEDe~L~~lV~kyG~~nW~~IAk~~g~gRT~KQCReRW~N~L~ 73 (249)
T PLN03212 22 GMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLR 73 (249)
T ss_pred CCcCCCCCHHHHHHHHHHHHHhCcccHHHHHHhhhcCCCcchHHHHHHHhhc
Confidence 35556899999999999999998 5899999887778999999999998765
No 10
>PF05499 DMAP1: DNA methyltransferase 1-associated protein 1 (DMAP1); InterPro: IPR008468 DNA methylation can contribute to transcriptional silencing through several transcriptionally repressive complexes, which include methyl-CpG binding domain proteins (MBDs) and histone deacetylases (HDACs). The chief enzyme that maintains mammalian DNA methylation, DNMT1, can also establish a repressive transcription complex. The non-catalytic N terminus of DNMT1 binds to HDAC2 and DMAP1 (for DNMT1 associated protein), and can mediate transcriptional repression. DMAP1 has intrinsic transcription repressive activity, and binds to the transcriptional co-repressor TSG101. DMAP1 is targeted to replication foci through interaction with the far N terminus of DNMT1 throughout S phase, whereas HDAC2 joins DNMT1 and DMAP1 only during late S phase, providing a platform for how histones may become deacetylated in heterochromatin following replication [].; GO: 0045892 negative regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=76.25 E-value=2.9 Score=38.88 Aligned_cols=56 Identities=23% Similarity=0.201 Sum_probs=33.8
Q ss_pred CCcccchhhhhhhhhhhccceeeeh-------HhHHHHHHhhhccchhhHHHHHHHHHHHhCC
Q 017891 198 PSTSIIADSASTLASLRMLRVYLRT-------YALEQMVQAASSSAGLRTIKRVEQALQELGV 253 (364)
Q Consensus 198 ~s~~~~~~~~~~~~~lr~~gvyLRs-------~~l~~~~qa~~~~~G~k~~K~Ie~~L~ELgv 253 (364)
.++++|+++.+.++.||++.|.|=+ ..+.++++-+.-....=-...|-+..+||.-
T Consensus 76 ~agikFpd~k~~GV~LRSq~mklp~~vGqKk~K~iEq~L~elgv~~~PmPTe~Ic~~fneLRs 138 (176)
T PF05499_consen 76 TAGIKFPDFKSAGVHLRSQRMKLPSSVGQKKTKAIEQFLQELGVDLNPMPTEEICQEFNELRS 138 (176)
T ss_pred hhccccccccCCceEeeecccccCcchhhHHHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHH
Confidence 4567888988899999998887622 2334444333222222223567777777744
No 11
>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A.
Probab=75.80 E-value=0.91 Score=35.79 Aligned_cols=56 Identities=29% Similarity=0.482 Sum_probs=39.7
Q ss_pred CCCChHHHHHHHHHhhh--cCcce------------eEEecCC---CCCCCHHHHHHHHHHHHHHHHHhcCCC
Q 017891 42 PMWTKEETDQLFELCER--FDLRF------------IVIADRF---PSSRTVEELKDRYYGVSRAILIARAPS 97 (364)
Q Consensus 42 ~~Wt~eETd~LfdLc~~--fDLRw------------~VI~DRy---~~~RtvEdLK~RyY~V~~~l~~~r~~~ 97 (364)
..||.+||..|+++..+ ++++| -.|++.. +..||.++++.++=++.+.+-..+...
T Consensus 2 ~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L~~~Yk~~k~~~ 74 (90)
T PF13837_consen 2 RNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWKNLKKKYKKIKDRN 74 (90)
T ss_dssp -SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHHHHHHHHHCSSSSS
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHhcC
Confidence 36999999999999999 66554 3344333 358999999999999999998887643
No 12
>cd05560 Xcc1710_like Xcc1710_like family, specific to proteobacteria. Xcc1710 is a hypothetical protein from Xanthomonas campestris pv. campestris str. ATCC 33913, similar to Mth938, a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. Their three-dimensional structures have been determined, but their functions are unknown.
Probab=64.77 E-value=5 Score=34.03 Aligned_cols=32 Identities=22% Similarity=0.257 Sum_probs=27.1
Q ss_pred HHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHH
Q 017891 242 KRVEQALQELGVNLKPKVPTKAVCAEHLELRKE 274 (364)
Q Consensus 242 K~Ie~~L~ELgv~~kP~mPT~~Vc~~f~eLR~~ 274 (364)
..+-+.|.+.||.+-. |+|.+.|..||.|.++
T Consensus 69 ~~~~~~l~~~gi~vE~-m~T~~AcrTyN~L~~E 100 (109)
T cd05560 69 PALLAPLLARGIGVEV-MDTQAACRTYNILMGE 100 (109)
T ss_pred HHHHHHHHHcCCeEEE-ECHHHHHHHHHHHHhC
Confidence 4566789999999776 9999999999999753
No 13
>cd05126 Mth938 Mth938 domain. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. The function of the protein has not been determined.
Probab=64.48 E-value=5.2 Score=34.49 Aligned_cols=32 Identities=22% Similarity=0.291 Sum_probs=27.1
Q ss_pred HHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHH
Q 017891 242 KRVEQALQELGVNLKPKVPTKAVCAEHLELRKE 274 (364)
Q Consensus 242 K~Ie~~L~ELgv~~kP~mPT~~Vc~~f~eLR~~ 274 (364)
..+-+.|.+.||..-. |+|.+.|..||.|..+
T Consensus 76 ~~~~~~l~~~Gi~ve~-m~T~aAcrTYN~L~~E 107 (117)
T cd05126 76 PETVEKLEKRGVEVLV-LPTEEAVKRYNELAGK 107 (117)
T ss_pred HHHHHHHHhcCCEEEE-cChHHHHHHHHHHHhC
Confidence 3456699999999776 9999999999999864
No 14
>cd00248 Mth938-like Mth938-like domain. The members of this family include: Mth938, 2P1, Xcr35, Rpa2829, and several uncharacterized sequences. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. 2P1 is a partially characterized nuclear protein which is homologous to E3-3 from rat and known to be alternately spliced. Xcr35 and Rpa2829 are hypothetical proteins of unknown function from the Xanthomonas campestris and Rhodopseudomonas palustris genomes, respectively, for which the crystal structures have been determined.
Probab=63.76 E-value=5.9 Score=33.48 Aligned_cols=32 Identities=25% Similarity=0.389 Sum_probs=27.7
Q ss_pred HHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHH
Q 017891 242 KRVEQALQELGVNLKPKVPTKAVCAEHLELRKE 274 (364)
Q Consensus 242 K~Ie~~L~ELgv~~kP~mPT~~Vc~~f~eLR~~ 274 (364)
..+-..|.+.||..-. |+|.+.|..||.|..+
T Consensus 69 ~~~~~~l~~~gI~vE~-m~T~aAcrTyNiL~~E 100 (109)
T cd00248 69 RALRAALRAAGIGVEV-MSTGAACRTYNVLLSE 100 (109)
T ss_pred HHHHHHHHHcCCeEEE-eCcHHHHHHHHHHHhC
Confidence 4677889999999776 9999999999999854
No 15
>PLN03091 hypothetical protein; Provisional
Probab=60.90 E-value=4.4 Score=42.63 Aligned_cols=51 Identities=14% Similarity=0.287 Sum_probs=43.2
Q ss_pred hhhCCCCCChHHHHHHHHHhhhcCc-ceeEEecCCCCCCCHHHHHHHHHHHH
Q 017891 37 KYLTDPMWTKEETDQLFELCERFDL-RFIVIADRFPSSRTVEELKDRYYGVS 87 (364)
Q Consensus 37 ~~L~d~~Wt~eETd~LfdLc~~fDL-Rw~VI~DRy~~~RtvEdLK~RyY~V~ 87 (364)
+-|+-..||.||-..|..+..+|+- .|-.|+...+..||--+.++||+.+-
T Consensus 10 qklrKg~WTpEEDe~L~~~V~kyG~~nWs~IAk~~g~gRT~KQCRERW~NyL 61 (459)
T PLN03091 10 QKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYL 61 (459)
T ss_pred CCCcCCCCCHHHHHHHHHHHHHhCcCCHHHHhhhhccCcCcchHhHHHHhcc
Confidence 4456678999999999999999996 59999877666899999999998654
No 16
>PF04430 DUF498: Protein of unknown function (DUF498/DUF598); InterPro: IPR007523 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This is entry represents an essential factor for the assembly of mitochondrial NADH:ubiquinone oxidoreductase complex (complex I) []. The crystal structure of this protein revealed a 3-layer beta+alpha/beta/alpha topology [].; PDB: 2K2E_A 2Q4Q_B 2AB1_A 2FVT_A 2CYJ_A 1IHN_B 2GM2_A 3CPK_A 2FI9_A.
Probab=59.52 E-value=5.2 Score=33.65 Aligned_cols=32 Identities=22% Similarity=0.342 Sum_probs=25.9
Q ss_pred HHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHH
Q 017891 242 KRVEQALQELGVNLKPKVPTKAVCAEHLELRKE 274 (364)
Q Consensus 242 K~Ie~~L~ELgv~~kP~mPT~~Vc~~f~eLR~~ 274 (364)
..+...|++.||..-- |+|.+-|..||.|.++
T Consensus 70 ~~~~~~l~~~GI~ve~-m~T~~Ac~tyN~L~~E 101 (110)
T PF04430_consen 70 PELREYLRKKGIGVEV-MDTPAACRTYNILASE 101 (110)
T ss_dssp HHHHHHHHTTT-EEEE-E-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCeEEE-ECHHHHHHHHHHHHhC
Confidence 5678889999999664 9999999999999865
No 17
>cd05125 Mth938_2P1-like Mth938_2P1-like domain. This model contains sequences that are similar to 2P1, a partially characterized nuclear protein, which is homologous to E3-3 from rat and known to be alternatively spliced. Its function is unknown. This family is part of the Mth938 family, for which structures, but no functional data are available.
Probab=53.36 E-value=10 Score=32.69 Aligned_cols=31 Identities=23% Similarity=0.428 Sum_probs=26.3
Q ss_pred HHHHHHHHHhCCCCCCCCChHHHHHHHHHHHH
Q 017891 242 KRVEQALQELGVNLKPKVPTKAVCAEHLELRK 273 (364)
Q Consensus 242 K~Ie~~L~ELgv~~kP~mPT~~Vc~~f~eLR~ 273 (364)
..+-..|.+.||..-. |+|.+.|..||.|.+
T Consensus 71 ~~~~~~l~~~gi~vev-m~T~~AcrtyN~L~~ 101 (114)
T cd05125 71 PELRKYFKKLGIAVEV-VDTRNACATFNFLAE 101 (114)
T ss_pred HHHHHHHHHcCCEEEE-ECHHHHHHHHHHHHh
Confidence 3456788899999765 999999999999975
No 18
>PHA00649 hypothetical protein
Probab=50.94 E-value=42 Score=27.25 Aligned_cols=39 Identities=23% Similarity=0.384 Sum_probs=32.7
Q ss_pred HHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017891 242 KRVEQALQELGVNLKPKVPTKAVCAEHLELRKEILTLLNLQKQLQY 287 (364)
Q Consensus 242 K~Ie~~L~ELgv~~kP~mPT~~Vc~~f~eLR~~Iv~LLeLKK~l~k 287 (364)
+.|.++|.-|||+..- |-+ | +|+|.++.-+-..||+.|+
T Consensus 17 rAV~~~~~~LGVD~~~--P~~-V----EEFr~D~~~~Rr~RKA~D~ 55 (83)
T PHA00649 17 RAVKKVFAILGVDVDV--PEQ-V----EEFREDLRFGRRMRKAADH 55 (83)
T ss_pred HHHHHHHHHHcCCCCC--HHH-H----HHHHHHHHHHHHHHHHhhc
Confidence 7899999999999763 433 2 8999999999999999883
No 19
>PF08963 DUF1878: Protein of unknown function (DUF1878); InterPro: IPR015058 This family consist of hypothetical bacterial proteins. ; PDB: 1SED_B.
Probab=50.60 E-value=8.1 Score=33.64 Aligned_cols=26 Identities=27% Similarity=0.537 Sum_probs=18.5
Q ss_pred HHhhhCCCCCChHHHHHHHHHhhhcC
Q 017891 35 YEKYLTDPMWTKEETDQLFELCERFD 60 (364)
Q Consensus 35 Y~~~L~d~~Wt~eETd~LfdLc~~fD 60 (364)
|...+-..+||++|++-.++||++++
T Consensus 29 Fy~LvI~~~Ltkeevee~~~lce~l~ 54 (113)
T PF08963_consen 29 FYALVIRKGLTKEEVEEFLRLCEELS 54 (113)
T ss_dssp HHHHHHHTT--HHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 34444457999999999999999854
No 20
>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=41.51 E-value=13 Score=37.91 Aligned_cols=46 Identities=30% Similarity=0.439 Sum_probs=40.9
Q ss_pred CCCCCChHHHHHHHHHhhhcCc-ceeEEecCCCCCCCHHHHHHHHHHH
Q 017891 40 TDPMWTKEETDQLFELCERFDL-RFIVIADRFPSSRTVEELKDRYYGV 86 (364)
Q Consensus 40 ~d~~Wt~eETd~LfdLc~~fDL-Rw~VI~DRy~~~RtvEdLK~RyY~V 86 (364)
-+++|+-.|--.|.+-|...+| .|-=|+|-.+ .|+-||.|+.||..
T Consensus 62 ~~e~WgadEEllli~~~~TlGlGNW~dIadyiG-sr~kee~k~HylK~ 108 (432)
T COG5114 62 GEEGWGADEELLLIECLDTLGLGNWEDIADYIG-SRAKEEIKSHYLKM 108 (432)
T ss_pred cCCCcCchHHHHHHHHHHhcCCCcHHHHHHHHh-hhhhHHHHHHHHHH
Confidence 3789999999999999999998 6888887655 99999999999864
No 21
>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]
Probab=39.31 E-value=23 Score=36.84 Aligned_cols=26 Identities=50% Similarity=0.912 Sum_probs=23.1
Q ss_pred CCChHHHHHHHHHhhhcCcceeEEecCC
Q 017891 43 MWTKEETDQLFELCERFDLRFIVIADRF 70 (364)
Q Consensus 43 ~Wt~eETd~LfdLc~~fDLRw~VI~DRy 70 (364)
-||+||---|-+||.+||+| ||.|=.
T Consensus 174 vwt~eeL~~i~elc~kh~v~--VISDEI 199 (388)
T COG1168 174 VWTKEELRKIAELCLRHGVR--VISDEI 199 (388)
T ss_pred cccHHHHHHHHHHHHHcCCE--EEeecc
Confidence 59999999999999999997 677754
No 22
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]
Probab=35.38 E-value=43 Score=31.91 Aligned_cols=59 Identities=25% Similarity=0.410 Sum_probs=44.3
Q ss_pred HHhhhC----CCCCChHHHHHHHHHhhhcCcceeEEecCCCCCCCHHHHHHHHHHH-HHHHHHhc
Q 017891 35 YEKYLT----DPMWTKEETDQLFELCERFDLRFIVIADRFPSSRTVEELKDRYYGV-SRAILIAR 94 (364)
Q Consensus 35 Y~~~L~----d~~Wt~eETd~LfdLc~~fDLRw~VI~DRy~~~RtvEdLK~RyY~V-~~~l~~~r 94 (364)
|-.||. -..||.||.+-|+.|-..|+-||-+|+=+ -+.||--++|--.=+- +++|....
T Consensus 52 W~NyLrP~ikrg~fT~eEe~~Ii~lH~~~GNrWs~IA~~-LPGRTDNeIKN~Wnt~lkkkl~~~~ 115 (238)
T KOG0048|consen 52 WTNYLRPDLKRGNFSDEEEDLIIKLHALLGNRWSLIAGR-LPGRTDNEVKNHWNTHLKKKLLKMG 115 (238)
T ss_pred hhcccCCCccCCCCCHHHHHHHHHHHHHHCcHHHHHHhh-CCCcCHHHHHHHHHHHHHHHHHHcC
Confidence 444554 35899999999999999999999999855 4579999997765443 44554443
No 23
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=33.34 E-value=35 Score=25.95 Aligned_cols=41 Identities=12% Similarity=0.327 Sum_probs=34.5
Q ss_pred CCChHHHHHHHHHhhhcCc-ce---eEEecCCCCCC-CHHHHHHHH
Q 017891 43 MWTKEETDQLFELCERFDL-RF---IVIADRFPSSR-TVEELKDRY 83 (364)
Q Consensus 43 ~Wt~eETd~LfdLc~~fDL-Rw---~VI~DRy~~~R-tvEdLK~Ry 83 (364)
.||.||-....+-++.|+. -| --|.+-+...+ |.+.++..+
T Consensus 5 ~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~ 50 (57)
T TIGR01557 5 VWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHL 50 (57)
T ss_pred CCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHH
Confidence 5999999999999999998 89 66777777656 998887765
No 24
>PRK14841 undecaprenyl pyrophosphate synthase; Provisional
Probab=31.71 E-value=36 Score=32.84 Aligned_cols=79 Identities=14% Similarity=0.247 Sum_probs=46.6
Q ss_pred ccccccCCHHHHHhhhCCCCCChHHHHHHHHHhhh-----------cCcceeEEecCCCCCCCHHHHHHHHHHHHHHHHH
Q 017891 24 SVDVVKYTDEEYEKYLTDPMWTKEETDQLFELCER-----------FDLRFIVIADRFPSSRTVEELKDRYYGVSRAILI 92 (364)
Q Consensus 24 ~v~ip~ytdeEY~~~L~d~~Wt~eETd~LfdLc~~-----------fDLRw~VI~DRy~~~RtvEdLK~RyY~V~~~l~~ 92 (364)
.|+|+.||-|-|. =+.+|.++||+|+.+ .+.|.-||-|+ +.=-++|++..-.+...
T Consensus 50 ~lTvYaFS~eN~~-------R~~~Ev~~Lm~L~~~~l~~~~~~~~~~~irvr~iG~~---~~Lp~~~~~~i~~~e~~--- 116 (233)
T PRK14841 50 YLTAFSFSTENWK-------RPKEEVEFLMDLFVQMIDREMELLRRERVRVRILGRK---EGLPEKVLKKWQEVEEK--- 116 (233)
T ss_pred EEEEEeeeHhhcC-------CCHHHHHHHHHHHHHHHHHHHHHHHHcCcEEEEEeCh---hhCCHHHHHHHHHHHHH---
Confidence 4677788877664 367899999999864 47788888876 22224555544333332
Q ss_pred hcCCCCCCCCCCCccCCCCChHHHHHH
Q 017891 93 ARAPSPTDVSGHPLVKDPYNVSQEVER 119 (364)
Q Consensus 93 ~r~~~~~~~~~~~l~~~~fd~~~E~~R 119 (364)
-..+ +.. +-.+-.+|+...|+.+
T Consensus 117 -T~~~-~~~--~Lnia~~Yggr~EI~~ 139 (233)
T PRK14841 117 -TKEF-DRM--TLVIAFNYGGRREILD 139 (233)
T ss_pred -hcCC-CCc--EEEEEecCCCHHHHHH
Confidence 1111 110 1112378988877743
No 25
>PF03993 DUF349: Domain of Unknown Function (DUF349); InterPro: IPR007139 This motif is found singly or as up to five tandem repeats in a small set of bacterial proteins. There are two or three alpha-helices, and possibly a beta-strand.
Probab=31.59 E-value=91 Score=23.77 Aligned_cols=19 Identities=26% Similarity=0.370 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHhcC
Q 017891 77 EELKDRYYGVSRAILIARA 95 (364)
Q Consensus 77 EdLK~RyY~V~~~l~~~r~ 95 (364)
|+|..||..+|..+...+.
T Consensus 1 d~Lw~~F~~a~~~~~~~~~ 19 (77)
T PF03993_consen 1 DELWKRFRAACDAFFDRRK 19 (77)
T ss_pred CHHHHHHHHHHHHHHHHHH
Confidence 5789999999999887765
No 26
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=31.09 E-value=32 Score=36.27 Aligned_cols=47 Identities=34% Similarity=0.576 Sum_probs=41.3
Q ss_pred hCCCCCChHHHHHHHHHhhhcCc-ceeEEecCCCCCCCHHHHHHHHHHH
Q 017891 39 LTDPMWTKEETDQLFELCERFDL-RFIVIADRFPSSRTVEELKDRYYGV 86 (364)
Q Consensus 39 L~d~~Wt~eETd~LfdLc~~fDL-Rw~VI~DRy~~~RtvEdLK~RyY~V 86 (364)
+-+++||-+|--.|.+-|..|++ .|-=|+|-.+ .+|=||-|+-|+..
T Consensus 70 i~~~~WtadEEilLLea~~t~G~GNW~dIA~hIG-tKtkeeck~hy~k~ 117 (438)
T KOG0457|consen 70 ILDPSWTADEEILLLEAAETYGFGNWQDIADHIG-TKTKEECKEHYLKH 117 (438)
T ss_pred CCCCCCChHHHHHHHHHHHHhCCCcHHHHHHHHc-ccchHHHHHHHHHH
Confidence 44789999999999999999998 6888887665 89999999999864
No 27
>cd03769 SR_IS607_transposase_like Serine Recombinase (SR) family, IS607-like transposase subfamily, catalytic domain; members contain a DNA binding domain with homology to MerR/SoxR located N-terminal to the catalytic domain. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. This subfamily is composed of proteins that catalyze the transposition of insertion sequence (IS) elements such as IS607 from Helicobacter and IS1535 from Mycobacterium, and similar proteins from other bacteria and several archaeal species. IS elements are DNA segments that move to new sites in prokaryotic and eukaryotic genomes causing insertion mutations and gene rearrangements.
Probab=29.54 E-value=60 Score=28.05 Aligned_cols=54 Identities=19% Similarity=0.202 Sum_probs=43.8
Q ss_pred CChHHHHHHHHHhhhcCcceeEEecCCCC---CCCHHHHHHHHHHHHHHHHHhcCCC
Q 017891 44 WTKEETDQLFELCERFDLRFIVIADRFPS---SRTVEELKDRYYGVSRAILIARAPS 97 (364)
Q Consensus 44 Wt~eETd~LfdLc~~fDLRw~VI~DRy~~---~RtvEdLK~RyY~V~~~l~~~r~~~ 97 (364)
|++.--|++..+|+..+++++++.+-++. ..-+..|-.=.-+++++|+..|.+.
T Consensus 74 l~R~~~d~~~~~l~~~gv~l~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~r~~~ 130 (134)
T cd03769 74 LARFGFELLEELFKAYGVEIVVINQEENEELEQELVEDLIEIITSFSARLYGKRSHK 130 (134)
T ss_pred HHHhhHHHHHHHHHHCCCEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHHhcCccccc
Confidence 77777888888999999999999987752 3567888888888888888888764
No 28
>PRK14842 undecaprenyl pyrophosphate synthase; Provisional
Probab=28.99 E-value=43 Score=32.59 Aligned_cols=39 Identities=18% Similarity=0.392 Sum_probs=29.8
Q ss_pred ccccccCCHHHHHhhhCCCCCChHHHHHHHHHhhhc-----------CcceeEEecC
Q 017891 24 SVDVVKYTDEEYEKYLTDPMWTKEETDQLFELCERF-----------DLRFIVIADR 69 (364)
Q Consensus 24 ~v~ip~ytdeEY~~~L~d~~Wt~eETd~LfdLc~~f-----------DLRw~VI~DR 69 (364)
.|+|+.||-|-|. =+.+|.+.||+|+.+| +.|.-||-|+
T Consensus 55 ~vTvYaFS~eN~~-------R~~~EV~~Lm~L~~~~l~~~~~~~~~~~irv~~iG~~ 104 (241)
T PRK14842 55 NISLYAFSTENWK-------RPITEIRSIFGLLVEFIETRLDTIHARGIRIHHSGSR 104 (241)
T ss_pred EEEEEEeehhhcC-------CCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEeCh
Confidence 4677788877664 3678999999998775 6777777766
No 29
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=28.95 E-value=57 Score=28.19 Aligned_cols=35 Identities=34% Similarity=0.527 Sum_probs=25.4
Q ss_pred hHHHHHHHHHhhhcCcc---eeEE-----ec-----CCCCC-CCHHHHHH
Q 017891 46 KEETDQLFELCERFDLR---FIVI-----AD-----RFPSS-RTVEELKD 81 (364)
Q Consensus 46 ~eETd~LfdLc~~fDLR---w~VI-----~D-----Ry~~~-RtvEdLK~ 81 (364)
+.||.+ -+||.+|+++ |+.| .+ .|... ||.++|..
T Consensus 62 ~~~~~~-~~L~~~y~I~~~gyPTl~lF~~g~~~~~~~Y~G~~r~~~~lv~ 110 (116)
T cd03007 62 YGEKLN-MELGERYKLDKESYPVIYLFHGGDFENPVPYSGADVTVDALQR 110 (116)
T ss_pred ccchhh-HHHHHHhCCCcCCCCEEEEEeCCCcCCCccCCCCcccHHHHHH
Confidence 445555 6899999997 7755 22 37775 99999974
No 30
>PRK14838 undecaprenyl pyrophosphate synthase; Provisional
Probab=27.19 E-value=52 Score=32.02 Aligned_cols=39 Identities=21% Similarity=0.425 Sum_probs=30.2
Q ss_pred ccccccCCHHHHHhhhCCCCCChHHHHHHHHHhh---------hcCcceeEEecC
Q 017891 24 SVDVVKYTDEEYEKYLTDPMWTKEETDQLFELCE---------RFDLRFIVIADR 69 (364)
Q Consensus 24 ~v~ip~ytdeEY~~~L~d~~Wt~eETd~LfdLc~---------~fDLRw~VI~DR 69 (364)
.|+++.||-|-|. =+.+|.++||+|+. +++.|.-||-|+
T Consensus 57 ~lT~YaFS~EN~k-------R~~~Ev~~Lm~l~~~~l~~~~~~~~~irir~iG~~ 104 (242)
T PRK14838 57 FLTLYTFSTENWN-------RPSDEVAALMSLLLDSIEEETFMKNNIRFRIIGDI 104 (242)
T ss_pred EEEEEeechhhcC-------CCHHHHHHHHHHHHHHHHHHHHHHcCcEEEEEeCh
Confidence 4667777777664 36789999999976 468888888876
No 31
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]
Probab=26.74 E-value=48 Score=31.59 Aligned_cols=36 Identities=17% Similarity=0.115 Sum_probs=30.6
Q ss_pred CCCChHHHHHHHHHhhhcCcc-eeEEecCCCCCCCHH
Q 017891 42 PMWTKEETDQLFELCERFDLR-FIVIADRFPSSRTVE 77 (364)
Q Consensus 42 ~~Wt~eETd~LfdLc~~fDLR-w~VI~DRy~~~RtvE 77 (364)
..||.||-+-|.++.+.|+-+ |..|....+-.|+=-
T Consensus 10 GpWt~EED~~L~~~V~~~G~~~W~~i~k~~gl~R~GK 46 (238)
T KOG0048|consen 10 GPWTQEEDLTQIRSIKSFGKHNGTALPKLAGLRRCGK 46 (238)
T ss_pred CCCChHHHHHHHHHHHHhCCCCcchhhhhcCCCccch
Confidence 689999999999999999988 999998876444433
No 32
>TIGR00055 uppS undecaprenyl diphosphate synthase. Alternate name: undecaprenyl pyrophosphate synthetase. Activity has been demonstrated experimentally for members of this family from Micrococcus luteus, E. coli, Haemophilus influenzae, and Streptococcus pneumoniae.
Probab=26.20 E-value=55 Score=31.53 Aligned_cols=39 Identities=33% Similarity=0.623 Sum_probs=30.4
Q ss_pred ccccccCCHHHHHhhhCCCCCChHHHHHHHHHhh-----------hcCcceeEEecC
Q 017891 24 SVDVVKYTDEEYEKYLTDPMWTKEETDQLFELCE-----------RFDLRFIVIADR 69 (364)
Q Consensus 24 ~v~ip~ytdeEY~~~L~d~~Wt~eETd~LfdLc~-----------~fDLRw~VI~DR 69 (364)
.++++.||-|-|. =+.+|.+.||+|.+ +.+.|.-||-|+
T Consensus 46 ~lT~yaFStEN~~-------Rp~~EV~~Lm~L~~~~l~~~~~~~~~~~irvr~iGd~ 95 (226)
T TIGR00055 46 CLTLYAFSTENWK-------RPKEEVDFLMELFEKKLDREVKELHRYNVRIRIIGDL 95 (226)
T ss_pred EEEEEEeehhhcC-------cCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEeCh
Confidence 4667778877664 26789999999965 578899999887
No 33
>KOG2656 consensus DNA methyltransferase 1-associated protein-1 [Chromatin structure and dynamics; Transcription]
Probab=25.91 E-value=15 Score=38.19 Aligned_cols=66 Identities=27% Similarity=0.358 Sum_probs=47.5
Q ss_pred cceeeehHhHHHHHHhhhccchhhHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Q 017891 216 LRVYLRTYALEQMVQAASSSAGLRTIKRVEQALQELGVNLKPKVPTKAVCAEHLELRKEILTL-LNLQKQLQYKEA 290 (364)
Q Consensus 216 ~gvyLRs~~l~~~~qa~~~~~G~k~~K~Ie~~L~ELgv~~kP~mPT~~Vc~~f~eLR~~Iv~L-LeLKK~l~k~E~ 290 (364)
+++|++++.+..+.... ..+-..|++|++|..|+||...+++.=+++.+.+..+ .++++++.+.++
T Consensus 374 ~~l~~~~~e~~s~k~~~---------~~~~~~~~~l~~P~~p~~~~~~~~e~~~~~~~~~~p~g~~~~~h~~kr~~ 440 (445)
T KOG2656|consen 374 PALYLCEYELSSLKHAL---------NEALAILQELSLPSRPVLPPFDVMERKESTLKKIGPLGIPSKKHVRKREA 440 (445)
T ss_pred Hhhhhhhhhhhhhhhhh---------hhhhhhhhhcCCCCCCCCCCcchhhhhhhhcccCCCCCCCcccccchhhc
Confidence 57888888776554332 3456778999999999999999998888877777765 555555555443
No 34
>COG0403 GcvP Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain [Amino acid transport and metabolism]
Probab=24.92 E-value=32 Score=36.38 Aligned_cols=23 Identities=48% Similarity=0.885 Sum_probs=19.0
Q ss_pred CcCCCccccc----cccccccCCCCCC
Q 017891 324 SINFGGERVG----KRDQKRKGPGRLS 346 (364)
Q Consensus 324 ~~~~~~~r~~----~~~~krk~~~~~~ 346 (364)
.++|||-..| |.+++|++|||..
T Consensus 276 PmgfGGPhag~fA~~~~~~R~mPGRlV 302 (450)
T COG0403 276 PMGFGGPHAGYFAVKDEFKRQMPGRLV 302 (450)
T ss_pred CcCCCCcceeeeeEhHhHhhcCCCcee
Confidence 4678877766 8999999999974
No 35
>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain
Probab=24.78 E-value=68 Score=24.73 Aligned_cols=49 Identities=20% Similarity=0.401 Sum_probs=32.7
Q ss_pred CCCCChHHHHHHHHHhhhcCcceeEEecCCCCCCCHHHHHHHHHHHHHHHHH
Q 017891 41 DPMWTKEETDQLFELCERFDLRFIVIADRFPSSRTVEELKDRYYGVSRAILI 92 (364)
Q Consensus 41 d~~Wt~eETd~LfdLc~~fDLRw~VI~DRy~~~RtvEdLK~RyY~V~~~l~~ 92 (364)
.+.||.+|+..|.+|++++ ..||.++....-|..+-..-+-.|+..|..
T Consensus 2 ~~~fs~~E~~~Lv~~v~~~---~~il~~k~~~~~~~~~k~~~W~~I~~~lN~ 50 (78)
T PF13873_consen 2 KPNFSEEEKEILVELVEKH---KDILENKFSDSVSNKEKRKAWEEIAEELNA 50 (78)
T ss_pred CCCCCHHHHHHHHHHHHHh---HHHHhcccccHHHHHHHHHHHHHHHHHHHh
Confidence 4689999999999998874 445666555445555544445555555554
No 36
>PRK06620 hypothetical protein; Validated
Probab=24.41 E-value=1.2e+02 Score=28.25 Aligned_cols=41 Identities=12% Similarity=0.270 Sum_probs=34.4
Q ss_pred CCChHHHHHHHHHhhhcCcceeEEecCCCCCCCHHHHHHHH
Q 017891 43 MWTKEETDQLFELCERFDLRFIVIADRFPSSRTVEELKDRY 83 (364)
Q Consensus 43 ~Wt~eETd~LfdLc~~fDLRw~VI~DRy~~~RtvEdLK~Ry 83 (364)
.|+.++--|||+.|++=+-..++..|+.+..-++.||+.|.
T Consensus 96 ~~~~~~lf~l~N~~~e~g~~ilits~~~p~~l~l~~L~SRl 136 (214)
T PRK06620 96 NWQEPALLHIFNIINEKQKYLLLTSSDKSRNFTLPDLSSRI 136 (214)
T ss_pred cchHHHHHHHHHHHHhcCCEEEEEcCCCccccchHHHHHHH
Confidence 58777888999999999987777788887777789999887
No 37
>PRK08068 transaminase; Reviewed
Probab=24.29 E-value=69 Score=31.75 Aligned_cols=27 Identities=11% Similarity=0.137 Sum_probs=23.5
Q ss_pred CCChHHHHHHHHHhhhcCcceeEEecCC
Q 017891 43 MWTKEETDQLFELCERFDLRFIVIADRF 70 (364)
Q Consensus 43 ~Wt~eETd~LfdLc~~fDLRw~VI~DRy 70 (364)
.|+.+|-..|.++|+++|+ |+|+=|-|
T Consensus 183 ~~s~~~~~~l~~la~~~~~-~ii~Deay 209 (389)
T PRK08068 183 VATKAFFEETVAFAKKHNI-GVVHDFAY 209 (389)
T ss_pred cCCHHHHHHHHHHHHHcCe-EEEEehhh
Confidence 6999999999999999998 66666666
No 38
>PF08986 DUF1889: Domain of unknown function (DUF1889); InterPro: IPR015079 This family consist of hypothetical bacterial proteins. ; PDB: 2JN8_A 2ES9_A.
Probab=23.32 E-value=40 Score=29.00 Aligned_cols=26 Identities=31% Similarity=0.293 Sum_probs=16.8
Q ss_pred hhccchhhHHHHHHHHHHHhCCCCCC
Q 017891 232 ASSSAGLRTIKRVEQALQELGVNLKP 257 (364)
Q Consensus 232 ~~~~~G~k~~K~Ie~~L~ELgv~~kP 257 (364)
.|.+...+++|-|--.|.|||||..|
T Consensus 41 ~P~sMdESTAKGi~KyL~elGvPasa 66 (119)
T PF08986_consen 41 VPHSMDESTAKGIFKYLKELGVPASA 66 (119)
T ss_dssp S--HCCCHHHHHHHHHHHHCT----H
T ss_pred CCCccchHHHHHHHHHHHHcCCCCCH
Confidence 45556668999999999999998554
No 39
>PF15058 Speriolin_N: Speriolin N terminus
Probab=23.31 E-value=2.2e+02 Score=27.15 Aligned_cols=81 Identities=17% Similarity=0.155 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHhhhhhccccccCCCCCCccccccCCCCCcccccCcCCCccccccccccccC
Q 017891 266 AEHLELRKEILTLL----NLQKQLQYKEAEGSSYRDGSYIDMPGTPKRSQRAGDQDRTFVPESINFGGERVGKRDQKRKG 341 (364)
Q Consensus 266 ~~f~eLR~~Iv~LL----eLKK~l~k~E~El~~lr~~~~a~~P~tp~~~~r~~~~~~~~~~~~~~~~~~r~~~~~~krk~ 341 (364)
..|+.||+.|-.|+ ||||++.=+..+...-|-=.++.. +.. . |+++..|.|-.-.+--|-.- -+--=-+
T Consensus 5 ~~yeGlrhqierLv~ENeeLKKlVrLirEN~eLksaL~ea~~-~~~---~--r~~~~vf~pp~pA~a~Ep~~-~~~Gi~~ 77 (200)
T PF15058_consen 5 TNYEGLRHQIERLVRENEELKKLVRLIRENHELKSALGEACA-EPS---Q--RQGNDVFLPPSPAYANEPCL-PEVGIVA 77 (200)
T ss_pred cchHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhc-ccc---c--ccCCceecCCCCCCCCCCCC-Ccccccc
Confidence 46899999999987 688877655444433333122111 111 1 22344566644433222211 1111235
Q ss_pred CCCCCCCCCCCC
Q 017891 342 PGRLSEAPSSPA 353 (364)
Q Consensus 342 ~~~~~~~~~~~~ 353 (364)
-|||.|.|.+|.
T Consensus 78 lapla~~l~spq 89 (200)
T PF15058_consen 78 LAPLADMLDSPQ 89 (200)
T ss_pred ccccccCCCCCC
Confidence 688999886654
No 40
>cd00475 CIS_IPPS Cis (Z)-Isoprenyl Diphosphate Synthases (cis-IPPS); homodimers which catalyze the successive 1'-4 condensation of the isopentenyl diphosphate (IPP) molecule to trans,trans-farnesyl diphosphate (FPP) or to cis,trans-FPP to form long-chain polyprenyl diphosphates. A few can also catalyze the condensation of IPP to trans-geranyl diphosphate to form the short-chain cis,trans- FPP. In prokaryotes, the cis-IPPS, undecaprenyl diphosphate synthase (UPP synthase) catalyzes the formation of the carrier lipid UPP in bacterial cell wall peptidooglycan biosynthesis. Similarly, in eukaryotes, the cis-IPPS, dehydrodolichyl diphosphate (dedol-PP) synthase catalyzes the formation of the polyisoprenoid glycosyl carrier lipid dolichyl monophosphate. cis-IPPS are mechanistically and structurally distinct from trans-IPPS, lacking the DDXXD motifs, yet requiring Mg2+ for activity.
Probab=23.08 E-value=69 Score=30.65 Aligned_cols=39 Identities=31% Similarity=0.507 Sum_probs=30.2
Q ss_pred ccccccCCHHHHHhhhCCCCCChHHHHHHHHHhhhc-----------CcceeEEecC
Q 017891 24 SVDVVKYTDEEYEKYLTDPMWTKEETDQLFELCERF-----------DLRFIVIADR 69 (364)
Q Consensus 24 ~v~ip~ytdeEY~~~L~d~~Wt~eETd~LfdLc~~f-----------DLRw~VI~DR 69 (364)
.++++.||-|-|. =+.+|.+.||+|+..| +.|.-||-|+
T Consensus 47 ~lTvyaFS~eN~~-------R~~~EV~~Lm~l~~~~l~~~~~~~~~~~i~vr~iGd~ 96 (221)
T cd00475 47 EVTLYAFSTENWK-------RPKEEVDFLMELFRDVLRRILKELEKLGVRIRIIGDL 96 (221)
T ss_pred EEEEEeechhhhC-------cCHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEEEeCh
Confidence 4667777777654 2578999999998866 7888888877
No 41
>PRK14827 undecaprenyl pyrophosphate synthase; Provisional
Probab=23.02 E-value=67 Score=32.26 Aligned_cols=39 Identities=15% Similarity=0.347 Sum_probs=29.1
Q ss_pred ccccccCCHHHHHhhhCCCCCChHHHHHHHHHhh-----------hcCcceeEEecC
Q 017891 24 SVDVVKYTDEEYEKYLTDPMWTKEETDQLFELCE-----------RFDLRFIVIADR 69 (364)
Q Consensus 24 ~v~ip~ytdeEY~~~L~d~~Wt~eETd~LfdLc~-----------~fDLRw~VI~DR 69 (364)
.|+++.||-|-|. =+.+|.+.||+|++ +.+.|.-||-|+
T Consensus 114 ~lTvYaFStEN~k-------R~~~EV~~Lm~L~~~~l~~~~~~~~~~~irir~iG~~ 163 (296)
T PRK14827 114 WLSLYAFSTENWK-------RSPEEVRFLMGFNRDVVRRRRDNLNKMGVRIRWVGSR 163 (296)
T ss_pred EEEEeeecchhhc-------CCHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEEEech
Confidence 4567777776664 36789999999965 457888888876
No 42
>PF03776 MinE: Septum formation topological specificity factor MinE; InterPro: IPR005527 Cytokinesis needs to be regulated spatially in order to ensure that it occurs between the daughter genomes. In prokaryotes such as Escherichia coli, cytokinesis is initiated by FtsZ, a tubulin-like protein that assembles into a ring structure at the cell centre called the Z ring. A fundamental problem in prokaryotic cell biology is to understand how the midcell division site is identified. Two major negative regulatory systems are known to be involved in preventing Z-ring assembly at all sites except the midcell. One of these systems, called nucleoid occlusion, blocks Z-ring assembly in the area occupied by an unsegregated nucleoid until a critical stage in chromosome replication or segregation is reached. The other system consists of three proteins, MinC, MinD and MinE, which prevent assembly of Z rings in regions of the cell not covered by the nucleoid, such as the cell poles. MinC is an inhibitor of FtsZ polymerisation, resulting in the inhibition of Z ring assembly in the cell; MinD greatly enhances the inhibitory effects of MinC in vivo; and MinE antagonizes the effects of MinC and MinD []. MinE is a small bifunctional protein. The amino terminus of MinE is required to interact with MinD, while the carboxyl terminus is required for `topological specificity' - that is, the ability of MinE to antagonise MinCD inhibition of Z rings at the midcell position but not at the poles.; GO: 0032955 regulation of barrier septum formation, 0051301 cell division; PDB: 2KXO_A 3MCD_B 3KU7_A 3R9J_C 3R9I_E 1EV0_B.
Probab=22.78 E-value=1.3e+02 Score=23.71 Aligned_cols=34 Identities=24% Similarity=0.233 Sum_probs=27.8
Q ss_pred cceeEEecCCCC-C--CCHHHHHHHHHHHHHHHHHhc
Q 017891 61 LRFIVIADRFPS-S--RTVEELKDRYYGVSRAILIAR 94 (364)
Q Consensus 61 LRw~VI~DRy~~-~--RtvEdLK~RyY~V~~~l~~~r 94 (364)
|..++++||-+. + -.|+.||.=-..|..+++..-
T Consensus 9 Lk~iL~~dR~~~~~~~~~l~~lk~eil~viskYv~i~ 45 (70)
T PF03776_consen 9 LKLILAHDRGGLSPQPDYLEQLKKEILEVISKYVEID 45 (70)
T ss_dssp EEEEEEEECCSC-CTTSSHHHHHHHHHHHHHHHS---
T ss_pred HHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhheecC
Confidence 788999999963 4 699999999999999998763
No 43
>PRK14829 undecaprenyl pyrophosphate synthase; Provisional
Probab=22.55 E-value=71 Score=31.00 Aligned_cols=79 Identities=13% Similarity=0.179 Sum_probs=46.0
Q ss_pred ccccccCCHHHHHhhhCCCCCChHHHHHHHHHhh-----------hcCcceeEEecCCCCCCCHHHHHHHHHHHHHHHHH
Q 017891 24 SVDVVKYTDEEYEKYLTDPMWTKEETDQLFELCE-----------RFDLRFIVIADRFPSSRTVEELKDRYYGVSRAILI 92 (364)
Q Consensus 24 ~v~ip~ytdeEY~~~L~d~~Wt~eETd~LfdLc~-----------~fDLRw~VI~DRy~~~RtvEdLK~RyY~V~~~l~~ 92 (364)
.|+|+.||-|-|. =..+|.+.||+|++ +.+.|.-||.|+ ++--++|++..=. +.+
T Consensus 61 ~vTvYaFS~eN~k-------R~~~Ev~~lm~L~~~~l~~~~~~~~~~~iri~~iG~~---~~Lp~~~~~~i~~----~e~ 126 (243)
T PRK14829 61 YLSLYTFSTENWK-------RSPDEVRFLMGFSRDVIHRRREQMDEWGVRVRWSGRR---PRLWKSVIDELEA----AEE 126 (243)
T ss_pred EEEEeeecchhhC-------CCHHHHHHHHHHHHHHHHHHHHHHHHcCcEEEEEech---hhCCHHHHHHHHH----HHH
Confidence 3566777766654 25679999999965 568889999887 3444566554322 222
Q ss_pred hcCCCCCCCCCCCccCCCCChHHHHHH
Q 017891 93 ARAPSPTDVSGHPLVKDPYNVSQEVER 119 (364)
Q Consensus 93 ~r~~~~~~~~~~~l~~~~fd~~~E~~R 119 (364)
.-..+ +.+ .--+-.+|+-..|+.+
T Consensus 127 ~T~~~-~~~--~Lnia~~Y~gr~EI~~ 150 (243)
T PRK14829 127 LTKNN-TTM--DLVFCVNYGGRAEIAD 150 (243)
T ss_pred HhccC-Cce--EEEEEecCCCHHHHHH
Confidence 21111 111 1112268998887743
No 44
>KOG1602 consensus Cis-prenyltransferase [Lipid transport and metabolism]
Probab=22.42 E-value=70 Score=31.77 Aligned_cols=78 Identities=26% Similarity=0.259 Sum_probs=47.9
Q ss_pred ccccccCCHHHHHhhhCCCCCChHHHHHHHHHhh--------------hcCcceeEEecCCCCCCCHHHHHHHHHHHHHH
Q 017891 24 SVDVVKYTDEEYEKYLTDPMWTKEETDQLFELCE--------------RFDLRFIVIADRFPSSRTVEELKDRYYGVSRA 89 (364)
Q Consensus 24 ~v~ip~ytdeEY~~~L~d~~Wt~eETd~LfdLc~--------------~fDLRw~VI~DRy~~~RtvEdLK~RyY~V~~~ 89 (364)
.|+++.||-|-+. =+++|.|-||+|.+ +|+.|+.||-|.= .=-|+| -....+
T Consensus 83 ~vT~fAFSieNFk-------Rs~eEVd~LM~L~~~k~~~~~~~~~~~~~~gvririiGdls---lL~~~l----~k~i~~ 148 (271)
T KOG1602|consen 83 EVTVFAFSIENFK-------RSPEEVDGLMDLALEKIERLLEQGEKLDKYGVRIRVIGDLS---LLPESL----RKAIKK 148 (271)
T ss_pred EEEEEEEehhhhC-------CCHHHHHHHHHHHHHHHHHHHHHhhhhhhcCeEEEEEcchh---hCCHHH----HHHHHH
Confidence 3566677766664 47899999999976 4899999998862 211333 233444
Q ss_pred HHHhcCCCCCCCCCCCccCCCCChHHHHH
Q 017891 90 ILIARAPSPTDVSGHPLVKDPYNVSQEVE 118 (364)
Q Consensus 90 l~~~r~~~~~~~~~~~l~~~~fd~~~E~~ 118 (364)
+.++=..+ .. -+-.+-++|...+|+-
T Consensus 149 ieE~Tknn-~~--~~L~vcf~Ytsr~EI~ 174 (271)
T KOG1602|consen 149 IEEATKNN-TR--LILNVCFAYTSRDEIL 174 (271)
T ss_pred HHHHhhcC-Cc--eEEEEEeccCcHHHHH
Confidence 44442222 11 1122347899888875
No 45
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=22.40 E-value=1.5e+02 Score=26.77 Aligned_cols=66 Identities=17% Similarity=0.142 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccc---ccCCCCCCccccccC--CCCCcccccCcCCCccc
Q 017891 266 AEHLELRKEILTLLNLQKQLQYKEAEGSSYRDGS---YIDMPGTPKRSQRAG--DQDRTFVPESINFGGER 331 (364)
Q Consensus 266 ~~f~eLR~~Iv~LLeLKK~l~k~E~El~~lr~~~---~a~~P~tp~~~~r~~--~~~~~~~~~~~~~~~~r 331 (364)
..-+.|+.+|..|-.+..-++.|..-|+.++... +.+.|..+...-... |.|...|+-+.|+..|+
T Consensus 20 ~qie~L~~~i~~l~~~~~e~~~~~~tl~~lk~~~~g~E~LVpvGag~fv~~kv~~~~kviV~iGsg~~ae~ 90 (145)
T COG1730 20 SQIESLQAQIAALNAAISELQTAIETLENLKGAGEGKEVLVPVGAGLFVKAKVKDMDKVIVSIGSGYYAEK 90 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEcCCCceEEEEeccCceEEEEcCCceeeee
Confidence 3346788888888888888888888888888765 899999998776533 55788899888887665
No 46
>cd01174 ribokinase Ribokinase catalyses the phosphorylation of ribose to ribose-5-phosphate using ATP. This reaction is the first step in the ribose metabolism. It traps ribose within the cell after uptake and also prepares the sugar for use in the synthesis of nucleotides and histidine, and for entry into the pentose phosphate pathway. Ribokinase is dimeric in solution.
Probab=21.96 E-value=1.6e+02 Score=27.38 Aligned_cols=49 Identities=10% Similarity=0.071 Sum_probs=39.7
Q ss_pred ccccccccccCCHHHHHhhhCCCCCChHHHHHHHHHhhhcCcceeEEec
Q 017891 20 KYNKSVDVVKYTDEEYEKYLTDPMWTKEETDQLFELCERFDLRFIVIAD 68 (364)
Q Consensus 20 KfN~~v~ip~ytdeEY~~~L~d~~Wt~eETd~LfdLc~~fDLRw~VI~D 68 (364)
.+-..+++...+++|...++....++.++...+...+..++.+++||.+
T Consensus 171 ~~~~~~dil~~n~~E~~~l~~~~~~~~~~~~~~~~~l~~~g~~~vvvt~ 219 (292)
T cd01174 171 ELLALVDILVPNETEAALLTGIEVTDEEDAEKAARLLLAKGVKNVIVTL 219 (292)
T ss_pred HHHhhCCEEeeCHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCEEEEEe
Confidence 3445688899999999988877777777777778888888999999885
No 47
>cd04765 HTH_MlrA-like_sg2 Helix-Turn-Helix DNA binding domain of putative MlrA-like transcription regulators. Putative helix-turn-helix (HTH) MlrA-like transcription regulators (subgroup 2), N-terminal domain. The MlrA protein, also known as YehV, has been shown to control cell-cell aggregation by co-regulating the expression of curli and extracellular matrix production in Escherichia coli and Salmonella typhimurium. These proteins belong to the MerR superfamily of transcription regulators that promote expression of several stress regulon genes by reconfiguring the spacer between the -35 and -10 promoter elements. Their conserved N-terminal domains contain predicted HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=21.80 E-value=1.6e+02 Score=24.36 Aligned_cols=34 Identities=26% Similarity=0.355 Sum_probs=22.9
Q ss_pred HHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHHHHHH
Q 017891 242 KRVEQALQELGVNLKPKVPTKAVCAEHLELRKEILTL 278 (364)
Q Consensus 242 K~Ie~~L~ELgv~~kP~mPT~~Vc~~f~eLR~~Iv~L 278 (364)
+.|-.+|+..+ ....|++.+.+.+.+++.+++.|
T Consensus 62 ~~i~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~l 95 (99)
T cd04765 62 EGAKQALKEDG---AAAIREEEAEERLPSIRAELLDL 95 (99)
T ss_pred HHHHHHHHhcc---ccccchhhHHHHHHHHHHHHHHH
Confidence 44555555433 33457888888888888888766
No 48
>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]
Probab=21.26 E-value=44 Score=35.71 Aligned_cols=46 Identities=20% Similarity=0.270 Sum_probs=40.3
Q ss_pred CCCCCChHHHHHHHHHhhhcCcceeEEecCCCCCCCHHHHHHHHHHH
Q 017891 40 TDPMWTKEETDQLFELCERFDLRFIVIADRFPSSRTVEELKDRYYGV 86 (364)
Q Consensus 40 ~d~~Wt~eETd~LfdLc~~fDLRw~VI~DRy~~~RtvEdLK~RyY~V 86 (364)
.|.+||++|+-.|.+=.++|+=-|--|++--+ .+|+|+--.+|-.+
T Consensus 278 ~dk~WS~qE~~LLLEGIe~ygDdW~kVA~HVg-tKt~EqCIl~FL~L 323 (531)
T COG5259 278 RDKNWSRQELLLLLEGIEMYGDDWDKVARHVG-TKTKEQCILHFLQL 323 (531)
T ss_pred ccccccHHHHHHHHHHHHHhhhhHHHHHHHhC-CCCHHHHHHHHHcC
Confidence 46699999999999999999999988887766 89999998888764
No 49
>PRK14840 undecaprenyl pyrophosphate synthase; Provisional
Probab=21.25 E-value=73 Score=31.19 Aligned_cols=39 Identities=26% Similarity=0.511 Sum_probs=29.3
Q ss_pred ccccccCCHHHHHhhhCCCCCChHHHHHHHHHhhhc-----------CcceeEEecC
Q 017891 24 SVDVVKYTDEEYEKYLTDPMWTKEETDQLFELCERF-----------DLRFIVIADR 69 (364)
Q Consensus 24 ~v~ip~ytdeEY~~~L~d~~Wt~eETd~LfdLc~~f-----------DLRw~VI~DR 69 (364)
.|+++.||-|-|. =+++|.+.||+|.++| +.|.-||-|+
T Consensus 69 ~lTvYaFS~EN~~-------R~~~EV~~Lm~L~~~~l~~~~~~~~~~~irvr~iGd~ 118 (250)
T PRK14840 69 VLTLFAFSTENFS-------RSKEEVAELFSLFNSQLDSQLPYLHENEIRLRCIGDL 118 (250)
T ss_pred EEEEEEeehhhcC-------CCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEeCh
Confidence 4567777776664 3678999999887764 7888888876
No 50
>PTZ00349 dehydrodolichyl diphosphate synthetase; Provisional
Probab=21.19 E-value=78 Score=32.23 Aligned_cols=39 Identities=21% Similarity=0.326 Sum_probs=29.7
Q ss_pred ccccccCCHHHHHhhhCCCCCChHHHHHHHHHh--------------hhcCcceeEEecC
Q 017891 24 SVDVVKYTDEEYEKYLTDPMWTKEETDQLFELC--------------ERFDLRFIVIADR 69 (364)
Q Consensus 24 ~v~ip~ytdeEY~~~L~d~~Wt~eETd~LfdLc--------------~~fDLRw~VI~DR 69 (364)
.|+|+.||-|-|. =+.+|.++||+|. .+++.|.-||-|+
T Consensus 66 ~lTlYAFStENwk-------Rp~~EV~~Lm~L~~~~l~~~~~~~~~l~~~~irirviGd~ 118 (322)
T PTZ00349 66 ILSVFSFSLLNYN-------RSPEEIHFLFYLNLLILINEDFFFKFIKDNKIKIKIIGNL 118 (322)
T ss_pred EEEEEEeehhhhC-------CCHHHHHHHHHHHHHHHHHhhhhHHHHHHCCCEEEEEeCh
Confidence 4677888887775 3678999999876 3567888888876
No 51
>PHA02550 32 single-stranded DNA binding protein; Provisional
Probab=21.09 E-value=66 Score=32.41 Aligned_cols=62 Identities=26% Similarity=0.490 Sum_probs=45.7
Q ss_pred CCccccccccccccCCHHHHHhhhCCCCCChHHHHHHHHHhhhcCcceeEEecCCCCCCCHHHHHHHHHHHHHHHHHhcC
Q 017891 16 YSFAKYNKSVDVVKYTDEEYEKYLTDPMWTKEETDQLFELCERFDLRFIVIADRFPSSRTVEELKDRYYGVSRAILIARA 95 (364)
Q Consensus 16 y~FaKfN~~v~ip~ytdeEY~~~L~d~~Wt~eETd~LfdLc~~fDLRw~VI~DRy~~~RtvEdLK~RyY~V~~~l~~~r~ 95 (364)
|-=.+|-....|+.+.||+|...| |. +++||.=++..|-| .|.|+|+.||=.|...=+..++
T Consensus 188 YD~s~f~~~s~l~~i~De~~~~~i----we-----------~~hdL~e~~a~~~F---Ksye~L~~rf~kVmG~s~~~~a 249 (304)
T PHA02550 188 YDDSKFAAPSPLPNIDDEAFQKEI----WE-----------QMHDLSEFVAPDKF---KSYEELETKFNKVMGTSAVGGA 249 (304)
T ss_pred cccccccccccCCCCCcHHHHHHH----HH-----------hcccHHHHhCHHhc---CCHHHHHHHHHHHhcccccccc
Confidence 445566677788999999998776 22 56777777777766 7899999999999865443333
No 52
>PTZ00376 aspartate aminotransferase; Provisional
Probab=20.73 E-value=89 Score=31.34 Aligned_cols=28 Identities=14% Similarity=0.158 Sum_probs=24.0
Q ss_pred CCChHHHHHHHHHhhhcCcceeEEecCCC
Q 017891 43 MWTKEETDQLFELCERFDLRFIVIADRFP 71 (364)
Q Consensus 43 ~Wt~eETd~LfdLc~~fDLRw~VI~DRy~ 71 (364)
.||.++-..|.++|+++|+ |+|.-|-|.
T Consensus 192 ~~s~~~~~~l~~~a~~~~~-~ii~De~Y~ 219 (404)
T PTZ00376 192 DPTEEQWKEIADVMKRKNL-IPFFDMAYQ 219 (404)
T ss_pred CCCHHHHHHHHHHHHhCCc-EEEEehhhc
Confidence 6999999999999999998 666666665
No 53
>cd01992 PP-ATPase N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]. This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This domain has a strongly conserved motif SGGXD at the N terminus.
Probab=20.70 E-value=2.9e+02 Score=24.13 Aligned_cols=34 Identities=18% Similarity=0.344 Sum_probs=25.3
Q ss_pred hHHHHHHHHHhhhcCcceeEE--ecCCCCCCCHHHH
Q 017891 46 KEETDQLFELCERFDLRFIVI--ADRFPSSRTVEEL 79 (364)
Q Consensus 46 ~eETd~LfdLc~~fDLRw~VI--~DRy~~~RtvEdL 79 (364)
.++.+++-.+|..+++.+.|+ ..-.....+++++
T Consensus 44 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 79 (185)
T cd01992 44 DEEAAFVADLCAKLGIPLYILVVALAPKPGGNLEAA 79 (185)
T ss_pred HHHHHHHHHHHHHcCCcEEEEeeccccCCCCCHHHH
Confidence 479999999999999999998 3222234556654
No 54
>PRK06855 aminotransferase; Validated
Probab=20.39 E-value=89 Score=31.86 Aligned_cols=25 Identities=20% Similarity=0.603 Sum_probs=20.7
Q ss_pred CCChHHHHHHHHHhhhcCcceeEEecC
Q 017891 43 MWTKEETDQLFELCERFDLRFIVIADR 69 (364)
Q Consensus 43 ~Wt~eETd~LfdLc~~fDLRw~VI~DR 69 (364)
.||.++-..|.++|++|| ++||.|=
T Consensus 187 ~~s~~~~~~l~~~a~~~~--~~II~De 211 (433)
T PRK06855 187 VYPKEILREIVDIAREYD--LFIICDE 211 (433)
T ss_pred CCCHHHHHHHHHHHHHcC--CEEEEec
Confidence 699999999999999997 4555543
No 55
>PRK14837 undecaprenyl pyrophosphate synthase; Provisional
Probab=20.32 E-value=76 Score=30.73 Aligned_cols=39 Identities=21% Similarity=0.388 Sum_probs=29.1
Q ss_pred ccccccCCHHHHHhhhCCCCCChHHHHHHHHHhh-----------hcCcceeEEecC
Q 017891 24 SVDVVKYTDEEYEKYLTDPMWTKEETDQLFELCE-----------RFDLRFIVIADR 69 (364)
Q Consensus 24 ~v~ip~ytdeEY~~~L~d~~Wt~eETd~LfdLc~-----------~fDLRw~VI~DR 69 (364)
.++++.||-|-|. =+.+|.++||+|.. +.+.|.-||-|+
T Consensus 53 ~lT~YaFS~EN~~-------Rp~~EV~~Lm~L~~~~l~~~~~~~~~~~irvr~iGd~ 102 (230)
T PRK14837 53 YLSLYVFSTENWN-------RTDSEIEHLMFLIADYLSSEFNFYKKNNIKIIVSGDI 102 (230)
T ss_pred EEEEEEeehhhcC-------CCHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEEEcCh
Confidence 4667777777664 36789999999886 457888888776
No 56
>PRK14833 undecaprenyl pyrophosphate synthase; Provisional
Probab=20.13 E-value=85 Score=30.36 Aligned_cols=39 Identities=26% Similarity=0.566 Sum_probs=29.3
Q ss_pred ccccccCCHHHHHhhhCCCCCChHHHHHHHHHhhhc-----------CcceeEEecC
Q 017891 24 SVDVVKYTDEEYEKYLTDPMWTKEETDQLFELCERF-----------DLRFIVIADR 69 (364)
Q Consensus 24 ~v~ip~ytdeEY~~~L~d~~Wt~eETd~LfdLc~~f-----------DLRw~VI~DR 69 (364)
.|+|+.||-|-|. =+.+|.+.||+|+.+| +.|.-||-|+
T Consensus 51 ~lTvyaFS~eN~~-------R~~~Ev~~Lm~L~~~~l~~~~~~~~~~~irvr~iG~~ 100 (233)
T PRK14833 51 CLTLYAFSTENWK-------RPKSEVDFLMKLLKKYLKDERSTYLENNIRFKAIGDL 100 (233)
T ss_pred EEEEeecchhhcC-------cCHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEeCh
Confidence 4667777777664 3678999999998774 7777788765
Done!