Query 017891
Match_columns 364
No_of_seqs 142 out of 188
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 06:35:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017891.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017891hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4iej_A DNA methyltransferase 1 100.0 1.5E-43 5E-48 290.0 5.6 86 13-98 2-91 (93)
2 3hm5_A DNA methyltransferase 1 100.0 3.4E-40 1.2E-44 270.6 5.5 85 13-97 2-90 (93)
3 1x58_A Hypothetical protein 49 97.5 3E-05 1E-09 59.1 2.2 48 42-89 9-58 (62)
4 3osg_A MYB21; transcription-DN 97.3 0.00016 5.6E-09 60.9 4.3 56 35-91 52-111 (126)
5 2cu7_A KIAA1915 protein; nucle 97.2 0.00018 6.2E-09 55.2 2.8 54 39-93 7-60 (72)
6 2k9n_A MYB24; R2R3 domain, DNA 96.9 0.00054 1.9E-08 56.1 3.4 58 35-93 43-104 (107)
7 2din_A Cell division cycle 5-l 96.9 0.00062 2.1E-08 51.2 3.3 54 40-95 8-61 (66)
8 1guu_A C-MYB, MYB proto-oncoge 96.8 0.00063 2.2E-08 48.7 3.0 47 40-87 2-49 (52)
9 1gv2_A C-MYB, MYB proto-oncoge 96.8 0.00053 1.8E-08 55.6 2.8 54 35-89 46-103 (105)
10 3sjm_A Telomeric repeat-bindin 96.8 0.00053 1.8E-08 51.9 2.5 47 42-88 12-60 (64)
11 1w0t_A Telomeric repeat bindin 96.7 0.00059 2E-08 49.3 2.1 47 42-88 3-51 (53)
12 2llk_A Cyclin-D-binding MYB-li 96.5 0.00057 2E-08 53.3 0.6 45 40-86 22-66 (73)
13 2ltp_A Nuclear receptor corepr 95.4 0.00048 1.7E-08 55.2 0.0 51 39-90 14-64 (89)
14 1x41_A Transcriptional adaptor 96.4 0.0012 4E-08 49.0 1.9 47 39-86 6-53 (60)
15 1gvd_A MYB proto-oncogene prot 96.4 0.0016 5.5E-08 46.6 2.6 47 39-86 1-48 (52)
16 1ity_A TRF1; helix-turn-helix, 96.4 0.0015 5.2E-08 49.5 2.6 48 41-88 10-59 (69)
17 2ckx_A NGTRF1, telomere bindin 96.4 0.0016 5.5E-08 52.0 2.7 48 43-90 2-53 (83)
18 2d9a_A B-MYB, MYB-related prot 96.4 0.0014 4.8E-08 48.2 2.1 47 39-86 6-53 (60)
19 2aje_A Telomere repeat-binding 96.3 0.002 6.7E-08 53.7 3.1 49 41-89 13-65 (105)
20 2elk_A SPCC24B10.08C protein; 96.3 0.0015 5.2E-08 48.2 2.2 47 40-86 8-55 (58)
21 3zqc_A MYB3; transcription-DNA 96.3 0.0021 7.2E-08 54.3 3.0 57 34-91 43-103 (131)
22 1h8a_C AMV V-MYB, MYB transfor 96.3 0.0012 4.1E-08 55.5 1.5 47 41-88 79-125 (128)
23 2cqr_A RSGI RUH-043, DNAJ homo 96.2 0.0025 8.7E-08 49.6 2.9 48 40-88 17-68 (73)
24 2yum_A ZZZ3 protein, zinc fing 96.2 0.0011 3.7E-08 51.0 0.7 53 40-93 7-65 (75)
25 2cjj_A Radialis; plant develop 95.8 0.0052 1.8E-07 50.0 3.2 52 41-93 8-63 (93)
26 2juh_A Telomere binding protei 95.8 0.0028 9.7E-08 54.0 1.5 49 41-89 17-69 (121)
27 2roh_A RTBP1, telomere binding 95.7 0.0031 1E-07 53.9 1.4 49 41-89 31-83 (122)
28 2dim_A Cell division cycle 5-l 95.7 0.0047 1.6E-07 46.8 2.2 48 39-87 7-55 (70)
29 2yus_A SWI/SNF-related matrix- 95.5 0.0042 1.4E-07 48.9 1.5 46 40-86 17-62 (79)
30 1h89_C C-MYB, MYB proto-oncoge 95.4 0.0042 1.4E-07 53.9 1.4 53 35-88 100-156 (159)
31 1wgx_A KIAA1903 protein; MYB D 95.0 0.0084 2.9E-07 46.9 1.9 45 41-86 8-56 (73)
32 2eqr_A N-COR1, N-COR, nuclear 94.9 0.0092 3.2E-07 44.4 1.8 43 42-85 13-55 (61)
33 2cqq_A RSGI RUH-037, DNAJ homo 94.2 0.013 4.6E-07 45.3 1.3 44 41-86 8-55 (72)
34 3osg_A MYB21; transcription-DN 93.9 0.028 9.4E-07 47.1 2.6 47 40-87 10-56 (126)
35 1gv2_A C-MYB, MYB proto-oncoge 93.4 0.039 1.3E-06 44.5 2.6 47 39-86 2-49 (105)
36 2k9n_A MYB24; R2R3 domain, DNA 92.3 0.053 1.8E-06 44.1 2.0 44 42-86 2-46 (107)
37 1h89_C C-MYB, MYB proto-oncoge 91.3 0.12 4.2E-06 44.6 3.3 52 34-86 47-103 (159)
38 1h8a_C AMV V-MYB, MYB transfor 91.2 0.086 2.9E-06 44.0 2.1 45 41-86 27-72 (128)
39 4eef_G F-HB80.4, designed hema 91.0 0.062 2.1E-06 42.2 1.0 41 42-83 21-65 (74)
40 3zqc_A MYB3; transcription-DNA 90.5 0.17 5.8E-06 42.5 3.3 45 42-87 3-48 (131)
41 1ug2_A 2610100B20RIK gene prod 88.6 0.29 9.9E-06 39.9 3.1 48 43-91 35-85 (95)
42 2yqk_A Arginine-glutamic acid 83.3 0.64 2.2E-05 34.6 2.5 45 40-84 8-52 (63)
43 2iw5_B Protein corest, REST co 80.5 0.57 1.9E-05 43.9 1.6 45 41-86 133-177 (235)
44 2lr8_A CAsp8-associated protei 81.1 0.35 1.2E-05 37.5 0.0 44 43-88 16-62 (70)
45 2crg_A Metastasis associated p 73.6 2.1 7E-05 32.6 2.7 47 42-89 9-55 (70)
46 1ign_A Protein (RAP1); RAP1,ye 67.6 2.9 0.0001 39.4 2.9 47 41-88 8-60 (246)
47 4b4c_A Chromodomain-helicase-D 64.1 4.5 0.00015 35.9 3.3 44 42-86 8-55 (211)
48 2ebi_A DNA binding protein GT- 61.6 2.4 8.1E-05 32.9 0.8 56 41-96 4-72 (86)
49 2gm2_A Conserved hypothetical 61.1 4.4 0.00015 34.4 2.5 32 242-274 81-112 (132)
50 2fvt_A Conserved hypothetical 59.1 4.4 0.00015 34.6 2.2 32 242-274 84-115 (135)
51 2ab1_A Hypothetical protein; H 57.5 4.5 0.00016 33.8 2.0 32 242-274 79-110 (122)
52 2fi9_A Outer membrane protein; 56.2 4.9 0.00017 33.7 2.0 32 242-274 85-116 (128)
53 4a69_C Nuclear receptor corepr 50.2 9.7 0.00033 30.4 2.7 53 32-85 34-86 (94)
54 3trt_A Vimentin; cytoskeleton, 49.3 29 0.00099 26.1 5.2 35 262-296 42-76 (77)
55 4dzn_A Coiled-coil peptide CC- 35.9 24 0.00082 23.0 2.3 28 270-300 6-33 (33)
56 2yf2_A C4B binding protein; im 35.5 71 0.0024 23.7 5.1 37 242-295 14-53 (65)
57 4d9a_A 2-pyrone-4,6-dicarbaxyl 35.2 58 0.002 30.1 6.0 64 14-79 39-112 (303)
58 3cpk_A Uncharacterized protein 32.4 17 0.00059 31.7 1.7 32 242-274 105-136 (150)
59 1ofc_X ISWI protein; nuclear p 32.4 37 0.0013 32.8 4.1 61 27-89 91-157 (304)
60 3sgv_B Undecaprenyl pyrophosph 30.4 19 0.00066 33.9 1.8 39 24-69 64-113 (253)
61 2es9_A Putative cytoplasmic pr 26.6 55 0.0019 26.9 3.6 25 232-256 29-53 (115)
62 3ugs_B Undecaprenyl pyrophosph 24.2 19 0.00064 33.4 0.4 38 25-69 54-102 (225)
63 2xag_B REST corepressor 1; ami 23.2 17 0.00059 37.3 -0.0 44 41-85 380-423 (482)
64 3ku7_A MINE, cell division top 22.5 1.1E+02 0.0038 23.8 4.6 32 61-92 23-54 (80)
65 2vg0_A Short-chain Z-isoprenyl 22.5 25 0.00085 32.4 0.9 39 25-70 51-98 (227)
66 1ihn_A Hypothetical protein MT 22.1 30 0.001 28.5 1.2 17 258-274 85-101 (113)
No 1
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=100.00 E-value=1.5e-43 Score=289.96 Aligned_cols=86 Identities=50% Similarity=0.914 Sum_probs=69.6
Q ss_pred CCCCCccccccccccccCCHHHHHhhhCCCCCChHHHHHHHHHhhhcCcceeEEecCCC----CCCCHHHHHHHHHHHHH
Q 017891 13 TGDYSFAKYNKSVDVVKYTDEEYEKYLTDPMWTKEETDQLFELCERFDLRFIVIADRFP----SSRTVEELKDRYYGVSR 88 (364)
Q Consensus 13 ~~~y~FaKfN~~v~ip~ytdeEY~~~L~d~~Wt~eETd~LfdLc~~fDLRw~VI~DRy~----~~RtvEdLK~RyY~V~~ 88 (364)
+++|||||||++|+||+||+|||++||+|++||+|||||||+||++|||||+||+|||. ..|||||||+|||+||+
T Consensus 2 ~~~y~FakfN~~v~ip~yt~eEY~~~L~~~~WT~eETd~LfdLc~~fdlRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~ 81 (93)
T 4iej_A 2 GKDYPFARFNKTVQVPVYSEQEYQLYLHDDAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICA 81 (93)
T ss_dssp ------------CCCCCCCHHHHHHHTCBTTBCHHHHHHHHHHHHHTTTCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHH
T ss_pred CCCCCccccCCcCCCcccCHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCeEEEeeccccCCCCCCCHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999997 37999999999999999
Q ss_pred HHHHhcCCCC
Q 017891 89 AILIARAPSP 98 (364)
Q Consensus 89 ~l~~~r~~~~ 98 (364)
+|+++|+++.
T Consensus 82 ~l~~~r~~~~ 91 (93)
T 4iej_A 82 KLANVRAVPG 91 (93)
T ss_dssp HHHHHTC---
T ss_pred HHHHhhCCCC
Confidence 9999998763
No 2
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=100.00 E-value=3.4e-40 Score=270.55 Aligned_cols=85 Identities=51% Similarity=0.931 Sum_probs=68.4
Q ss_pred CCCCCccccccccccccCCHHHHHhhhCCCCCChHHHHHHHHHhhhcCcceeEEecCCC----CCCCHHHHHHHHHHHHH
Q 017891 13 TGDYSFAKYNKSVDVVKYTDEEYEKYLTDPMWTKEETDQLFELCERFDLRFIVIADRFP----SSRTVEELKDRYYGVSR 88 (364)
Q Consensus 13 ~~~y~FaKfN~~v~ip~ytdeEY~~~L~d~~Wt~eETd~LfdLc~~fDLRw~VI~DRy~----~~RtvEdLK~RyY~V~~ 88 (364)
+++|||||||++++||+||+|||++||++++||+|||||||+||++|||||+||+|||+ ..|||||||+|||+||+
T Consensus 2 ~~~y~fakfN~~~~i~~yt~eeY~~~L~~~~WTkEETd~Lf~L~~~fdlRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~ 81 (93)
T 3hm5_A 2 GKDYPFARFNKTVQVPVYSEQEYQLYLHDDAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICA 81 (93)
T ss_dssp -------------CCCCCCHHHHHHHTCBTTBCHHHHHHHHHHHHHTTTCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHH
T ss_pred CCCCCchhccccCCCCccCHHHHHHHcCCCCCCHHHHHHHHHHHHHhCCCeeeehhhhccCCCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999996 47999999999999999
Q ss_pred HHHHhcCCC
Q 017891 89 AILIARAPS 97 (364)
Q Consensus 89 ~l~~~r~~~ 97 (364)
+|+++|+.+
T Consensus 82 ~l~~~r~~~ 90 (93)
T 3hm5_A 82 KLANVRAVP 90 (93)
T ss_dssp HHHHHTC--
T ss_pred HHHHhcCCC
Confidence 999999643
No 3
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=97.53 E-value=3e-05 Score=59.11 Aligned_cols=48 Identities=25% Similarity=0.349 Sum_probs=43.7
Q ss_pred CCCChHHHHHHHHHhhhcCcceeEEecCCC--CCCCHHHHHHHHHHHHHH
Q 017891 42 PMWTKEETDQLFELCERFDLRFIVIADRFP--SSRTVEELKDRYYGVSRA 89 (364)
Q Consensus 42 ~~Wt~eETd~LfdLc~~fDLRw~VI~DRy~--~~RtvEdLK~RyY~V~~~ 89 (364)
..||.||+.+|++++++|+-.|--|..-|+ ..||-=|||+||+.++++
T Consensus 9 ~~WT~EE~~~L~~gV~k~G~~W~~I~~~y~f~~~RT~VdLKdk~r~L~k~ 58 (62)
T 1x58_A 9 KDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRLISG 58 (62)
T ss_dssp SSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHHHHHHhHhHHHHHHhCCCccCcccchHHHHHHHHHhc
Confidence 479999999999999999999999998665 689999999999998763
No 4
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=97.31 E-value=0.00016 Score=60.91 Aligned_cols=56 Identities=29% Similarity=0.551 Sum_probs=48.4
Q ss_pred HHhhhC----CCCCChHHHHHHHHHhhhcCcceeEEecCCCCCCCHHHHHHHHHHHHHHHH
Q 017891 35 YEKYLT----DPMWTKEETDQLFELCERFDLRFIVIADRFPSSRTVEELKDRYYGVSRAIL 91 (364)
Q Consensus 35 Y~~~L~----d~~Wt~eETd~LfdLc~~fDLRw~VI~DRy~~~RtvEdLK~RyY~V~~~l~ 91 (364)
|..+|. ...||.||...|++++..|+-+|-.|+..++ .||-.++|.||+.+.+++-
T Consensus 52 w~~~l~p~~~~~~WT~eEd~~L~~~v~~~G~~W~~Ia~~l~-gRt~~~~k~rw~~l~~k~~ 111 (126)
T 3osg_A 52 WKNYLAPSISHTPWTAEEDALLVQKIQEYGRQWAIIAKFFP-GRTDIHIKNRWVTISNKLG 111 (126)
T ss_dssp HHHHTSTTSCCSCCCHHHHHHHHHHHHHHCSCHHHHHTTST-TCCHHHHHHHHHHHHHHTT
T ss_pred HhhhcccccccccCCHHHHHHHHHHHHHHCcCHHHHHHHcC-CCCHHHHHHHHHHHHHhcC
Confidence 555553 3579999999999999999999999998664 7999999999999999853
No 5
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=97.17 E-value=0.00018 Score=55.21 Aligned_cols=54 Identities=22% Similarity=0.207 Sum_probs=47.6
Q ss_pred hCCCCCChHHHHHHHHHhhhcCcceeEEecCCCCCCCHHHHHHHHHHHHHHHHHh
Q 017891 39 LTDPMWTKEETDQLFELCERFDLRFIVIADRFPSSRTVEELKDRYYGVSRAILIA 93 (364)
Q Consensus 39 L~d~~Wt~eETd~LfdLc~~fDLRw~VI~DRy~~~RtvEdLK~RyY~V~~~l~~~ 93 (364)
+....||.||-..|+++.+.|+-+|-.|+..+ +.||-.+.|.||+...++++..
T Consensus 7 ~~~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~-~~Rt~~q~k~r~~~~l~~~~~~ 60 (72)
T 2cu7_A 7 GYSVKWTIEEKELFEQGLAKFGRRWTKISKLI-GSRTVLQVKSYARQYFKNKVKC 60 (72)
T ss_dssp SCCCCCCHHHHHHHHHHHHHTCSCHHHHHHHH-SSSCHHHHHHHHHHHHHHHSCS
T ss_pred cCCCCCCHHHHHHHHHHHHHHCcCHHHHHHHc-CCCCHHHHHHHHHHHHHHHHhc
Confidence 34568999999999999999999999999865 4699999999999998887654
No 6
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=96.90 E-value=0.00054 Score=56.06 Aligned_cols=58 Identities=16% Similarity=0.347 Sum_probs=50.2
Q ss_pred HHhhhC----CCCCChHHHHHHHHHhhhcCcceeEEecCCCCCCCHHHHHHHHHHHHHHHHHh
Q 017891 35 YEKYLT----DPMWTKEETDQLFELCERFDLRFIVIADRFPSSRTVEELKDRYYGVSRAILIA 93 (364)
Q Consensus 35 Y~~~L~----d~~Wt~eETd~LfdLc~~fDLRw~VI~DRy~~~RtvEdLK~RyY~V~~~l~~~ 93 (364)
|..+|. ...||.||-..|++++..|+-+|-.|+..+ +.||-.++|.||+.+.+++...
T Consensus 43 w~~~L~p~i~~~~WT~eEd~~L~~~~~~~G~~W~~Ia~~l-~gRt~~~~k~rw~~l~r~~~~~ 104 (107)
T 2k9n_A 43 WNNYINPALRTDPWSPEEDMLLDQKYAEYGPKWNKISKFL-KNRSDNNIRNRWMMIARHRAKH 104 (107)
T ss_dssp HHHHSSSCCTTCCCCHHHHHHHHHHHHHTCSCHHHHHHHH-SSSCHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHcccccccccCHHHHHHHHHHHHHhCcCHHHHHHHC-CCCCHHHHHHHHHHHHhhHHHh
Confidence 566664 468999999999999999999999999765 5799999999999999987643
No 7
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.88 E-value=0.00062 Score=51.23 Aligned_cols=54 Identities=19% Similarity=0.304 Sum_probs=47.7
Q ss_pred CCCCCChHHHHHHHHHhhhcCcceeEEecCCCCCCCHHHHHHHHHHHHHHHHHhcC
Q 017891 40 TDPMWTKEETDQLFELCERFDLRFIVIADRFPSSRTVEELKDRYYGVSRAILIARA 95 (364)
Q Consensus 40 ~d~~Wt~eETd~LfdLc~~fDLRw~VI~DRy~~~RtvEdLK~RyY~V~~~l~~~r~ 95 (364)
....||.||-..|+++.+.|+-+|-.|+. +.. ||-.+.++||....+..+..-.
T Consensus 8 ~k~~WT~eED~~L~~~~~~~g~~W~~Ia~-~~g-Rt~~qcr~Rw~~~l~~~~~~~~ 61 (66)
T 2din_A 8 KKTEWSREEEEKLLHLAKLMPTQWRTIAP-IIG-RTAAQCLEHYEFLLDKAAQRDS 61 (66)
T ss_dssp SCCCCCHHHHHHHHHHHHHCTTCHHHHHH-HHS-SCHHHHHHHHHHHHHHHHHSSS
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCHHHHhc-ccC-cCHHHHHHHHHHHhChHhcCCC
Confidence 34689999999999999999999999999 764 9999999999999888776543
No 8
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=96.84 E-value=0.00063 Score=48.69 Aligned_cols=47 Identities=32% Similarity=0.490 Sum_probs=42.0
Q ss_pred CCCCCChHHHHHHHHHhhhcCc-ceeEEecCCCCCCCHHHHHHHHHHHH
Q 017891 40 TDPMWTKEETDQLFELCERFDL-RFIVIADRFPSSRTVEELKDRYYGVS 87 (364)
Q Consensus 40 ~d~~Wt~eETd~LfdLc~~fDL-Rw~VI~DRy~~~RtvEdLK~RyY~V~ 87 (364)
+...||.||-..|.+++..|+- +|-.|+..++ .||-.+.++||+.+-
T Consensus 2 ~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L 49 (52)
T 1guu_A 2 GKTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVL 49 (52)
T ss_dssp -CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTST-TCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcC-CCCHHHHHHHHHHHc
Confidence 4568999999999999999998 9999998875 699999999998764
No 9
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=96.83 E-value=0.00053 Score=55.57 Aligned_cols=54 Identities=24% Similarity=0.462 Sum_probs=46.2
Q ss_pred HHhhhC----CCCCChHHHHHHHHHhhhcCcceeEEecCCCCCCCHHHHHHHHHHHHHH
Q 017891 35 YEKYLT----DPMWTKEETDQLFELCERFDLRFIVIADRFPSSRTVEELKDRYYGVSRA 89 (364)
Q Consensus 35 Y~~~L~----d~~Wt~eETd~LfdLc~~fDLRw~VI~DRy~~~RtvEdLK~RyY~V~~~ 89 (364)
|..+|. ...||.||-..|++++..|+-+|-.|+..+ +.||-.++|.||+.+.++
T Consensus 46 w~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~Ia~~l-~gRt~~~~k~rw~~~~~~ 103 (105)
T 1gv2_A 46 WHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLL-PGRTDNAIKNHWNSTMRR 103 (105)
T ss_dssp HHHTTCCCCCCCCCCHHHHHHHHHHHHHHSSCHHHHHTTC-TTCCHHHHHHHHHHHTC-
T ss_pred HHhccCCcccccCCCHHHHHHHHHHHHHhCCCHHHHHHHc-CCCCHHHHHHHHHHHHhc
Confidence 566664 468999999999999999999999999766 469999999999987654
No 10
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=96.81 E-value=0.00053 Score=51.93 Aligned_cols=47 Identities=26% Similarity=0.505 Sum_probs=42.4
Q ss_pred CCCChHHHHHHHHHhhhcCc-ceeEEecCCC-CCCCHHHHHHHHHHHHH
Q 017891 42 PMWTKEETDQLFELCERFDL-RFIVIADRFP-SSRTVEELKDRYYGVSR 88 (364)
Q Consensus 42 ~~Wt~eETd~LfdLc~~fDL-Rw~VI~DRy~-~~RtvEdLK~RyY~V~~ 88 (364)
..||.||.+.|.+++.+|+- .|-.|+.-++ ..||--++++||..+.+
T Consensus 12 ~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k 60 (64)
T 3sjm_A 12 QKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKR 60 (64)
T ss_dssp CCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhc
Confidence 47999999999999999995 8999998876 57999999999988765
No 11
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=96.72 E-value=0.00059 Score=49.25 Aligned_cols=47 Identities=23% Similarity=0.327 Sum_probs=42.7
Q ss_pred CCCChHHHHHHHHHhhhcCc-ceeEEecCCCC-CCCHHHHHHHHHHHHH
Q 017891 42 PMWTKEETDQLFELCERFDL-RFIVIADRFPS-SRTVEELKDRYYGVSR 88 (364)
Q Consensus 42 ~~Wt~eETd~LfdLc~~fDL-Rw~VI~DRy~~-~RtvEdLK~RyY~V~~ 88 (364)
..||.||...|.+++..|+. .|-.|+.-++. .||--++++||..+.+
T Consensus 3 ~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k 51 (53)
T 1w0t_A 3 QAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK 51 (53)
T ss_dssp CCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHc
Confidence 47999999999999999995 99999998874 6999999999998865
No 12
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=96.47 E-value=0.00057 Score=53.35 Aligned_cols=45 Identities=24% Similarity=0.284 Sum_probs=41.9
Q ss_pred CCCCCChHHHHHHHHHhhhcCcceeEEecCCCCCCCHHHHHHHHHHH
Q 017891 40 TDPMWTKEETDQLFELCERFDLRFIVIADRFPSSRTVEELKDRYYGV 86 (364)
Q Consensus 40 ~d~~Wt~eETd~LfdLc~~fDLRw~VI~DRy~~~RtvEdLK~RyY~V 86 (364)
.-..||.||-..|++|...|+-+|-.|+..+ .||--++|+||+.+
T Consensus 22 ~k~~wT~EED~~L~~l~~~~G~kW~~IA~~l--gRt~~q~knRw~~L 66 (73)
T 2llk_A 22 HVGKYTPEEIEKLKELRIKHGNDWATIGAAL--GRSASSVKDRCRLM 66 (73)
T ss_dssp CCCSSCHHHHHHHHHHHHHHSSCHHHHHHHH--TSCHHHHHHHHHHC
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCHHHHHHHh--CCCHHHHHHHHHHH
Confidence 3468999999999999999999999999998 99999999999975
No 13
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=95.45 E-value=0.00048 Score=55.20 Aligned_cols=51 Identities=24% Similarity=0.235 Sum_probs=45.2
Q ss_pred hCCCCCChHHHHHHHHHhhhcCcceeEEecCCCCCCCHHHHHHHHHHHHHHH
Q 017891 39 LTDPMWTKEETDQLFELCERFDLRFIVIADRFPSSRTVEELKDRYYGVSRAI 90 (364)
Q Consensus 39 L~d~~Wt~eETd~LfdLc~~fDLRw~VI~DRy~~~RtvEdLK~RyY~V~~~l 90 (364)
+....||.||-..|+++...|+-+|-.|+..++ .||..+.|.|||...+++
T Consensus 14 ~~~~~WT~eEd~~l~~~~~~~G~~W~~IA~~l~-gRt~~q~k~r~~~~lrk~ 64 (89)
T 2ltp_A 14 LYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVG-SKTVSQCKNFYFNYKKRQ 64 (89)
Confidence 445689999999999999999999999997764 799999999999887764
No 14
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=96.40 E-value=0.0012 Score=49.02 Aligned_cols=47 Identities=26% Similarity=0.417 Sum_probs=41.3
Q ss_pred hCCCCCChHHHHHHHHHhhhcCc-ceeEEecCCCCCCCHHHHHHHHHHH
Q 017891 39 LTDPMWTKEETDQLFELCERFDL-RFIVIADRFPSSRTVEELKDRYYGV 86 (364)
Q Consensus 39 L~d~~Wt~eETd~LfdLc~~fDL-Rw~VI~DRy~~~RtvEdLK~RyY~V 86 (364)
|....||.||-..|.+++..|+. +|-.|+..++ .||-.+.++||..+
T Consensus 6 ~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~r~~~~ 53 (60)
T 1x41_A 6 SGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMC-TKTKEECEKHYMKY 53 (60)
T ss_dssp CCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHT-TSCHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 34568999999999999999994 9999998875 59999999999865
No 15
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=96.40 E-value=0.0016 Score=46.59 Aligned_cols=47 Identities=30% Similarity=0.564 Sum_probs=41.4
Q ss_pred hCCCCCChHHHHHHHHHhhhcCc-ceeEEecCCCCCCCHHHHHHHHHHH
Q 017891 39 LTDPMWTKEETDQLFELCERFDL-RFIVIADRFPSSRTVEELKDRYYGV 86 (364)
Q Consensus 39 L~d~~Wt~eETd~LfdLc~~fDL-Rw~VI~DRy~~~RtvEdLK~RyY~V 86 (364)
|....||.||...|.+++..|+- +|-.|+..+ ..||--+.++||+.+
T Consensus 1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~-~~Rt~~qcr~Rw~~~ 48 (52)
T 1gvd_A 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHL-KGRIGKQCRERWHNH 48 (52)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTS-TTCCHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHc-CCCCHHHHHHHHHHH
Confidence 34568999999999999999997 699999887 479999999999864
No 16
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=96.40 E-value=0.0015 Score=49.53 Aligned_cols=48 Identities=23% Similarity=0.318 Sum_probs=43.5
Q ss_pred CCCCChHHHHHHHHHhhhcCc-ceeEEecCCCC-CCCHHHHHHHHHHHHH
Q 017891 41 DPMWTKEETDQLFELCERFDL-RFIVIADRFPS-SRTVEELKDRYYGVSR 88 (364)
Q Consensus 41 d~~Wt~eETd~LfdLc~~fDL-Rw~VI~DRy~~-~RtvEdLK~RyY~V~~ 88 (364)
-..||.||...|.+++..|+. .|-.|+..++. .||--++++||..+.+
T Consensus 10 r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~ 59 (69)
T 1ity_A 10 RQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK 59 (69)
T ss_dssp CCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcC
Confidence 357999999999999999995 99999998874 7999999999998876
No 17
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=96.38 E-value=0.0016 Score=51.96 Aligned_cols=48 Identities=23% Similarity=0.306 Sum_probs=42.9
Q ss_pred CCChHHHHHHHHHhhhcCc-ceeEEecCCC---CCCCHHHHHHHHHHHHHHH
Q 017891 43 MWTKEETDQLFELCERFDL-RFIVIADRFP---SSRTVEELKDRYYGVSRAI 90 (364)
Q Consensus 43 ~Wt~eETd~LfdLc~~fDL-Rw~VI~DRy~---~~RtvEdLK~RyY~V~~~l 90 (364)
.||.||.+.|.+++++|+. +|-.|...|. ..||--|||+||.+.+++-
T Consensus 2 ~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~ 53 (83)
T 2ckx_A 2 PFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTA 53 (83)
T ss_dssp CCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhc
Confidence 5999999999999999999 9999997632 5899999999999988754
No 18
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=96.35 E-value=0.0014 Score=48.24 Aligned_cols=47 Identities=32% Similarity=0.535 Sum_probs=41.7
Q ss_pred hCCCCCChHHHHHHHHHhhhcCc-ceeEEecCCCCCCCHHHHHHHHHHH
Q 017891 39 LTDPMWTKEETDQLFELCERFDL-RFIVIADRFPSSRTVEELKDRYYGV 86 (364)
Q Consensus 39 L~d~~Wt~eETd~LfdLc~~fDL-Rw~VI~DRy~~~RtvEdLK~RyY~V 86 (364)
+....||.||...|.+++..|+. +|-.|+..++ .||--+.++||+.+
T Consensus 6 ~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~ 53 (60)
T 2d9a_A 6 SGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFP-NRTDQQCQYRWLRV 53 (60)
T ss_dssp CCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCS-SSCHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcc-CCCHHHHHHHHHHH
Confidence 34568999999999999999995 9999998875 59999999999865
No 19
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=96.34 E-value=0.002 Score=53.68 Aligned_cols=49 Identities=18% Similarity=0.245 Sum_probs=44.1
Q ss_pred CCCCChHHHHHHHHHhhhcCc-ceeEEecCCC---CCCCHHHHHHHHHHHHHH
Q 017891 41 DPMWTKEETDQLFELCERFDL-RFIVIADRFP---SSRTVEELKDRYYGVSRA 89 (364)
Q Consensus 41 d~~Wt~eETd~LfdLc~~fDL-Rw~VI~DRy~---~~RtvEdLK~RyY~V~~~ 89 (364)
-..||.||+..|.+.+++|+- +|--|...|. ..||--|||+||..+.+.
T Consensus 13 r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~ 65 (105)
T 2aje_A 13 RRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHT 65 (105)
T ss_dssp CCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhh
Confidence 457999999999999999998 9999998764 689999999999988774
No 20
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=96.33 E-value=0.0015 Score=48.16 Aligned_cols=47 Identities=32% Similarity=0.484 Sum_probs=42.2
Q ss_pred CCCCCChHHHHHHHHHhhhcC-cceeEEecCCCCCCCHHHHHHHHHHH
Q 017891 40 TDPMWTKEETDQLFELCERFD-LRFIVIADRFPSSRTVEELKDRYYGV 86 (364)
Q Consensus 40 ~d~~Wt~eETd~LfdLc~~fD-LRw~VI~DRy~~~RtvEdLK~RyY~V 86 (364)
....||.+|-..|+++++.|+ -+|-.|+...+..||-.+.++||..+
T Consensus 8 ~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~ 55 (58)
T 2elk_A 8 FDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKT 55 (58)
T ss_dssp CCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHH
Confidence 356899999999999999999 69999998877689999999999764
No 21
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=96.26 E-value=0.0021 Score=54.31 Aligned_cols=57 Identities=25% Similarity=0.436 Sum_probs=48.3
Q ss_pred HHHhhhC----CCCCChHHHHHHHHHhhhcCcceeEEecCCCCCCCHHHHHHHHHHHHHHHH
Q 017891 34 EYEKYLT----DPMWTKEETDQLFELCERFDLRFIVIADRFPSSRTVEELKDRYYGVSRAIL 91 (364)
Q Consensus 34 EY~~~L~----d~~Wt~eETd~LfdLc~~fDLRw~VI~DRy~~~RtvEdLK~RyY~V~~~l~ 91 (364)
-|..+|. ...||.||-..|++++..|+-+|-.|+..++ .||--++|.||++..++-+
T Consensus 43 Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~Ia~~l~-gRt~~~~k~rw~~~l~~~~ 103 (131)
T 3zqc_A 43 RWFNHLDPAVVKHAWTPEEDETIFRNYLKLGSKWSVIAKLIP-GRTDNAIKNRWNSSISKRI 103 (131)
T ss_dssp HHHHHTSTTCCCSCCCHHHHHHHHHHHHHSCSCHHHHTTTST-TCCHHHHHHHHHHTTGGGC
T ss_pred HHhhccCccccCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcC-CCCHHHHHHHHHHHHHHHh
Confidence 3666664 3579999999999999999999999997654 7999999999998876533
No 22
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=96.26 E-value=0.0012 Score=55.47 Aligned_cols=47 Identities=26% Similarity=0.474 Sum_probs=42.3
Q ss_pred CCCCChHHHHHHHHHhhhcCcceeEEecCCCCCCCHHHHHHHHHHHHH
Q 017891 41 DPMWTKEETDQLFELCERFDLRFIVIADRFPSSRTVEELKDRYYGVSR 88 (364)
Q Consensus 41 d~~Wt~eETd~LfdLc~~fDLRw~VI~DRy~~~RtvEdLK~RyY~V~~ 88 (364)
...||.||-..|+++...|+-+|-.|+..+ +.||-.++|.||+.+.+
T Consensus 79 ~~~WT~eEd~~L~~~~~~~G~~W~~Ia~~l-~gRt~~~~k~r~~~~~~ 125 (128)
T 1h8a_C 79 KTSWTEEEDRIIYQAHKRLGNRWAEIAKLL-PGRTDNAVKNHWNSTMR 125 (128)
T ss_dssp CSCCCHHHHHHHHHHHHHHCSCHHHHGGGS-TTCCHHHHHHHHHTTTT
T ss_pred cccCCHHHHHHHHHHHHHHCcCHHHHHHHC-CCCCHHHHHHHHHHHHh
Confidence 358999999999999999999999999766 47999999999997754
No 23
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=96.20 E-value=0.0025 Score=49.62 Aligned_cols=48 Identities=21% Similarity=0.276 Sum_probs=42.6
Q ss_pred CCCCCChHHHHHHHHHhhhcC----cceeEEecCCCCCCCHHHHHHHHHHHHH
Q 017891 40 TDPMWTKEETDQLFELCERFD----LRFIVIADRFPSSRTVEELKDRYYGVSR 88 (364)
Q Consensus 40 ~d~~Wt~eETd~LfdLc~~fD----LRw~VI~DRy~~~RtvEdLK~RyY~V~~ 88 (364)
....||.+|...|..+...|+ -||-.|+...+ .||.++.+.||..++.
T Consensus 17 ~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vp-GRT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 17 AEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVP-SKSKEDCIARYKLLVS 68 (73)
T ss_dssp SSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCS-SSCHHHHHHHHHHHHS
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 346899999999999999999 69999998876 5999999999987754
No 24
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.19 E-value=0.0011 Score=51.03 Aligned_cols=53 Identities=25% Similarity=0.358 Sum_probs=45.5
Q ss_pred CCCCCChHHHHHHHHHhhhcC------cceeEEecCCCCCCCHHHHHHHHHHHHHHHHHh
Q 017891 40 TDPMWTKEETDQLFELCERFD------LRFIVIADRFPSSRTVEELKDRYYGVSRAILIA 93 (364)
Q Consensus 40 ~d~~Wt~eETd~LfdLc~~fD------LRw~VI~DRy~~~RtvEdLK~RyY~V~~~l~~~ 93 (364)
....||.||-..|.++...|+ -+|-.|+.-++ .||..+.++||.....++++.
T Consensus 7 ~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~-~Rt~~qcr~r~~~~l~~~~k~ 65 (75)
T 2yum_A 7 GNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELG-NRTAKQVASQVQKYFIKLTKA 65 (75)
T ss_dssp CSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHS-SSCHHHHHHHHHHHHGGGSTT
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhc
Confidence 456899999999999999999 79999998765 599999999998777665543
No 25
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=95.80 E-value=0.0052 Score=49.98 Aligned_cols=52 Identities=23% Similarity=0.308 Sum_probs=45.4
Q ss_pred CCCCChHHHHHHHHHhhhcC----cceeEEecCCCCCCCHHHHHHHHHHHHHHHHHh
Q 017891 41 DPMWTKEETDQLFELCERFD----LRFIVIADRFPSSRTVEELKDRYYGVSRAILIA 93 (364)
Q Consensus 41 d~~Wt~eETd~LfdLc~~fD----LRw~VI~DRy~~~RtvEdLK~RyY~V~~~l~~~ 93 (364)
...||.||-..|..+...|+ -||-.|+...+ .||.++.+.||-.....+...
T Consensus 8 ~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vp-GRT~~q~k~ry~~l~~dv~~i 63 (93)
T 2cjj_A 8 GRPWSAKENKAFERALAVYDKDTPDRWANVARAVE-GRTPEEVKKHYEILVEDIKYI 63 (93)
T ss_dssp CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHST-TCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHh
Confidence 45799999999999999997 68999998887 499999999999998876443
No 26
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=95.76 E-value=0.0028 Score=53.99 Aligned_cols=49 Identities=22% Similarity=0.297 Sum_probs=44.4
Q ss_pred CCCCChHHHHHHHHHhhhcCc-ceeEEecCCC---CCCCHHHHHHHHHHHHHH
Q 017891 41 DPMWTKEETDQLFELCERFDL-RFIVIADRFP---SSRTVEELKDRYYGVSRA 89 (364)
Q Consensus 41 d~~Wt~eETd~LfdLc~~fDL-Rw~VI~DRy~---~~RtvEdLK~RyY~V~~~ 89 (364)
-..||.||.+.|.+++++|+- +|-.|...|. ..||--|||+||....+.
T Consensus 17 r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~ 69 (121)
T 2juh_A 17 RRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHT 69 (121)
T ss_dssp SCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhh
Confidence 357999999999999999998 9999998764 589999999999999886
No 27
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=95.69 E-value=0.0031 Score=53.85 Aligned_cols=49 Identities=24% Similarity=0.279 Sum_probs=43.7
Q ss_pred CCCCChHHHHHHHHHhhhcCc-ceeEEecCCC---CCCCHHHHHHHHHHHHHH
Q 017891 41 DPMWTKEETDQLFELCERFDL-RFIVIADRFP---SSRTVEELKDRYYGVSRA 89 (364)
Q Consensus 41 d~~Wt~eETd~LfdLc~~fDL-Rw~VI~DRy~---~~RtvEdLK~RyY~V~~~ 89 (364)
-..||.||.+.|.+++++|+- +|-.|...+. ..||--|||+||....+.
T Consensus 31 r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~ 83 (122)
T 2roh_A 31 RRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHT 83 (122)
T ss_dssp CCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhh
Confidence 458999999999999999998 9999987642 689999999999988875
No 28
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.66 E-value=0.0047 Score=46.84 Aligned_cols=48 Identities=17% Similarity=0.305 Sum_probs=42.8
Q ss_pred hCCCCCChHHHHHHHHHhhhcC-cceeEEecCCCCCCCHHHHHHHHHHHH
Q 017891 39 LTDPMWTKEETDQLFELCERFD-LRFIVIADRFPSSRTVEELKDRYYGVS 87 (364)
Q Consensus 39 L~d~~Wt~eETd~LfdLc~~fD-LRw~VI~DRy~~~RtvEdLK~RyY~V~ 87 (364)
++...||.||-..|.+++..|+ -+|-.|+..++ .||-.+.++||+.+-
T Consensus 7 ~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~L 55 (70)
T 2dim_A 7 GKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLH-RKSAKQCKARWYEWL 55 (70)
T ss_dssp STTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHST-TCCHHHHHHHHHHTS
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhc-CCCHHHHHHHHHHHc
Confidence 4556899999999999999999 79999998876 799999999998753
No 29
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=95.51 E-value=0.0042 Score=48.92 Aligned_cols=46 Identities=24% Similarity=0.336 Sum_probs=40.5
Q ss_pred CCCCCChHHHHHHHHHhhhcCcceeEEecCCCCCCCHHHHHHHHHHH
Q 017891 40 TDPMWTKEETDQLFELCERFDLRFIVIADRFPSSRTVEELKDRYYGV 86 (364)
Q Consensus 40 ~d~~Wt~eETd~LfdLc~~fDLRw~VI~DRy~~~RtvEdLK~RyY~V 86 (364)
....||.+|...|.++.+.|+-+|--|+...+ .||.++.++||..+
T Consensus 17 ~~~~WT~eEd~~Ll~~v~~~G~~W~~IA~~v~-~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 17 AGREWTEQETLLLLEALEMYKDDWNKVSEHVG-SRTQDECILHFLRL 62 (79)
T ss_dssp CSCCCCHHHHHHHHHHHHHSSSCHHHHHHHHS-SCCHHHHHHHHTTS
T ss_pred cCCCcCHHHHHHHHHHHHHhCCCHHHHHHHcC-CCCHHHHHHHHHHh
Confidence 35689999999999999999999999998765 59999999999643
No 30
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=95.43 E-value=0.0042 Score=53.88 Aligned_cols=53 Identities=25% Similarity=0.475 Sum_probs=45.2
Q ss_pred HHhhhC----CCCCChHHHHHHHHHhhhcCcceeEEecCCCCCCCHHHHHHHHHHHHH
Q 017891 35 YEKYLT----DPMWTKEETDQLFELCERFDLRFIVIADRFPSSRTVEELKDRYYGVSR 88 (364)
Q Consensus 35 Y~~~L~----d~~Wt~eETd~LfdLc~~fDLRw~VI~DRy~~~RtvEdLK~RyY~V~~ 88 (364)
|..+|. ...||.+|-..|+++...|+-+|-.|+..+ +.||-.++|.||+...+
T Consensus 100 w~~~l~p~~~~~~WT~eEd~~L~~~~~~~g~~W~~Ia~~l-~gRt~~~~knr~~~~~r 156 (159)
T 1h89_C 100 WHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLL-PGRTDNAIKNHWNSTMR 156 (159)
T ss_dssp HHHTTCTTSCCSCCCHHHHHHHHHHHHHHCSCHHHHHTTS-TTCCHHHHHHHHHTTTC
T ss_pred HHHHhCccccccCCChHHHHHHHHHHHHHCCCHHHHHHHC-CCCCHHHHHHHHHHHHh
Confidence 555553 358999999999999999999999999765 57999999999998654
No 31
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=95.04 E-value=0.0084 Score=46.91 Aligned_cols=45 Identities=22% Similarity=0.316 Sum_probs=39.4
Q ss_pred CCCCChHHHHHHHHHhhhcCc----ceeEEecCCCCCCCHHHHHHHHHHH
Q 017891 41 DPMWTKEETDQLFELCERFDL----RFIVIADRFPSSRTVEELKDRYYGV 86 (364)
Q Consensus 41 d~~Wt~eETd~LfdLc~~fDL----Rw~VI~DRy~~~RtvEdLK~RyY~V 86 (364)
+..||.+|-..|-.-+..||. ||-.|++-.+. ||+||.+.+|-..
T Consensus 8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~g-KT~eE~~~hY~~l 56 (73)
T 1wgx_A 8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGS-RSPEECQRKYMEN 56 (73)
T ss_dssp SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTT-SCHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCC-CCHHHHHHHHHHH
Confidence 468999999999999999996 88888887765 9999999999765
No 32
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.95 E-value=0.0092 Score=44.41 Aligned_cols=43 Identities=21% Similarity=0.333 Sum_probs=39.3
Q ss_pred CCCChHHHHHHHHHhhhcCcceeEEecCCCCCCCHHHHHHHHHH
Q 017891 42 PMWTKEETDQLFELCERFDLRFIVIADRFPSSRTVEELKDRYYG 85 (364)
Q Consensus 42 ~~Wt~eETd~LfdLc~~fDLRw~VI~DRy~~~RtvEdLK~RyY~ 85 (364)
..||.+|-..+.+....|+=+|-.|+ .+-+.||+.|+..+||.
T Consensus 13 ~~WT~eE~~~F~~~~~~~gk~w~~Ia-~~l~~rt~~~~v~~Yy~ 55 (61)
T 2eqr_A 13 NVWTDHEKEIFKDKFIQHPKNFGLIA-SYLERKSVPDCVLYYYL 55 (61)
T ss_dssp CSCCHHHHHHHHHHHHHSTTCHHHHH-HHCTTSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCCHHHHH-HHcCCCCHHHHHHHHHH
Confidence 57999999999999999999999999 55567999999999986
No 33
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=94.23 E-value=0.013 Score=45.34 Aligned_cols=44 Identities=27% Similarity=0.456 Sum_probs=38.2
Q ss_pred CCCCChHHHHHHHHHhhhcC----cceeEEecCCCCCCCHHHHHHHHHHH
Q 017891 41 DPMWTKEETDQLFELCERFD----LRFIVIADRFPSSRTVEELKDRYYGV 86 (364)
Q Consensus 41 d~~Wt~eETd~LfdLc~~fD----LRw~VI~DRy~~~RtvEdLK~RyY~V 86 (364)
...||.||-..|-.++..|+ =||-.|+.-. .||++|++.+|=..
T Consensus 8 ~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l--gRt~~eV~~~y~~L 55 (72)
T 2cqq_A 8 APEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL--GRSVTDVTTKAKQL 55 (72)
T ss_dssp CCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH--TSCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh--CCCHHHHHHHHHHH
Confidence 45799999999999999997 6999999875 59999999987544
No 34
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=93.87 E-value=0.028 Score=47.15 Aligned_cols=47 Identities=23% Similarity=0.385 Sum_probs=42.0
Q ss_pred CCCCCChHHHHHHHHHhhhcCcceeEEecCCCCCCCHHHHHHHHHHHH
Q 017891 40 TDPMWTKEETDQLFELCERFDLRFIVIADRFPSSRTVEELKDRYYGVS 87 (364)
Q Consensus 40 ~d~~Wt~eETd~LfdLc~~fDLRw~VI~DRy~~~RtvEdLK~RyY~V~ 87 (364)
+-..||.||.+.|..++..|+-.|-.|+..++ .||-.+..+||..+.
T Consensus 10 kk~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~-~Rt~~qcr~Rw~~~l 56 (126)
T 3osg_A 10 KKQKFTPEEDEMLKRAVAQHGSDWKMIAATFP-NRNARQCRDRWKNYL 56 (126)
T ss_dssp SSCCCCHHHHHHHHHHHHHHTTCHHHHHHTCT-TCCHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcC-CCCHHHHHHHHhhhc
Confidence 34579999999999999999999999998765 699999999999764
No 35
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=93.39 E-value=0.039 Score=44.46 Aligned_cols=47 Identities=28% Similarity=0.548 Sum_probs=41.3
Q ss_pred hCCCCCChHHHHHHHHHhhhcCc-ceeEEecCCCCCCCHHHHHHHHHHH
Q 017891 39 LTDPMWTKEETDQLFELCERFDL-RFIVIADRFPSSRTVEELKDRYYGV 86 (364)
Q Consensus 39 L~d~~Wt~eETd~LfdLc~~fDL-Rw~VI~DRy~~~RtvEdLK~RyY~V 86 (364)
|.-..||.||...|..++..|+- +|-.|+..+ +.||..+.++||..+
T Consensus 2 l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l-~~Rt~~qcr~Rw~~~ 49 (105)
T 1gv2_A 2 LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHL-KGRIGKQCRERWHNH 49 (105)
T ss_dssp CCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTS-TTCCHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhh-cCCCHHHHHHHHHhc
Confidence 34568999999999999999997 799999776 579999999999875
No 36
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=92.33 E-value=0.053 Score=44.07 Aligned_cols=44 Identities=23% Similarity=0.367 Sum_probs=39.3
Q ss_pred CCCChHHHHHHHHHhhhcCc-ceeEEecCCCCCCCHHHHHHHHHHH
Q 017891 42 PMWTKEETDQLFELCERFDL-RFIVIADRFPSSRTVEELKDRYYGV 86 (364)
Q Consensus 42 ~~Wt~eETd~LfdLc~~fDL-Rw~VI~DRy~~~RtvEdLK~RyY~V 86 (364)
..||.||-+.|..++..|+- +|..|+...+ .||-.+..+||..+
T Consensus 2 ~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~ 46 (107)
T 2k9n_A 2 VKFTEEEDLKLQQLVMRYGAKDWIRISQLMI-TRNPRQCRERWNNY 46 (107)
T ss_dssp CSSCHHHHHHHHHHHHHHCSSCHHHHHHHTT-TSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHhhhcC-CCCHHHHHHHHHHH
Confidence 36999999999999999996 8999998764 79999999999865
No 37
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=91.28 E-value=0.12 Score=44.56 Aligned_cols=52 Identities=27% Similarity=0.556 Sum_probs=44.0
Q ss_pred HHHhhhC----CCCCChHHHHHHHHHhhhcCc-ceeEEecCCCCCCCHHHHHHHHHHH
Q 017891 34 EYEKYLT----DPMWTKEETDQLFELCERFDL-RFIVIADRFPSSRTVEELKDRYYGV 86 (364)
Q Consensus 34 EY~~~L~----d~~Wt~eETd~LfdLc~~fDL-Rw~VI~DRy~~~RtvEdLK~RyY~V 86 (364)
-|..+|. ...||.||...|.+++..|+- +|-.|+.-+ +.||-.+.++||+..
T Consensus 47 Rw~~~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~l-~~Rt~~qcr~Rw~~~ 103 (159)
T 1h89_C 47 RWQKVLNPELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHL-KGRIGKQCRERWHNH 103 (159)
T ss_dssp HHHTTTCTTCCCSCCCHHHHHHHHHHHHHHCSCCHHHHHHTS-TTCCHHHHHHHHHHT
T ss_pred HHHHccCCCcCCCCCChHHHHHHHHHHHHhCcccHHHHHHHc-CCCCHHHHHHHHHHH
Confidence 3666664 358999999999999999996 799999766 579999999999875
No 38
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=91.23 E-value=0.086 Score=44.02 Aligned_cols=45 Identities=24% Similarity=0.475 Sum_probs=39.7
Q ss_pred CCCCChHHHHHHHHHhhhcCc-ceeEEecCCCCCCCHHHHHHHHHHH
Q 017891 41 DPMWTKEETDQLFELCERFDL-RFIVIADRFPSSRTVEELKDRYYGV 86 (364)
Q Consensus 41 d~~Wt~eETd~LfdLc~~fDL-Rw~VI~DRy~~~RtvEdLK~RyY~V 86 (364)
-..||.||...|.+++..|+- +|-.|+.-+ +.||-.+.++||..+
T Consensus 27 k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l-~~Rt~~qcr~Rw~~~ 72 (128)
T 1h8a_C 27 KGPWTKEEDQRVIEHVQKYGPKRWSDIAKHL-KGRIGKQCRERWHNH 72 (128)
T ss_dssp CSCCCHHHHHHHHHHHHHTCSCCHHHHHHHS-SSCCHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHh-cCCcHHHHHHHHHHh
Confidence 458999999999999999996 699999776 479999999999864
No 39
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=91.04 E-value=0.062 Score=42.20 Aligned_cols=41 Identities=24% Similarity=0.254 Sum_probs=34.4
Q ss_pred CCCChHHHHHHHHHhhhcCc----ceeEEecCCCCCCCHHHHHHHH
Q 017891 42 PMWTKEETDQLFELCERFDL----RFIVIADRFPSSRTVEELKDRY 83 (364)
Q Consensus 42 ~~Wt~eETd~LfdLc~~fDL----Rw~VI~DRy~~~RtvEdLK~Ry 83 (364)
..||++|-..|=.....|+- ||-.|+...+ .||+||++.+|
T Consensus 21 ~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~Vp-GKT~eEVk~hY 65 (74)
T 4eef_G 21 RPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVK-GRTPEEVKKHY 65 (74)
T ss_dssp -CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSC-SSCHHHHHGGG
T ss_pred CCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcC-CCCHHHHHHHH
Confidence 47999999998888899998 7777776665 49999999887
No 40
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=90.49 E-value=0.17 Score=42.51 Aligned_cols=45 Identities=16% Similarity=0.269 Sum_probs=39.8
Q ss_pred CCCChHHHHHHHHHhhhcC-cceeEEecCCCCCCCHHHHHHHHHHHH
Q 017891 42 PMWTKEETDQLFELCERFD-LRFIVIADRFPSSRTVEELKDRYYGVS 87 (364)
Q Consensus 42 ~~Wt~eETd~LfdLc~~fD-LRw~VI~DRy~~~RtvEdLK~RyY~V~ 87 (364)
..||.||-+.|..++..|+ -.|-.|+... +.||-.+..+||..+.
T Consensus 3 g~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~-~~Rt~~qcr~Rw~~~l 48 (131)
T 3zqc_A 3 GPFTEAEDDLIREYVKENGPQNWPRITSFL-PNRSPKQCRERWFNHL 48 (131)
T ss_dssp SSCCHHHHHHHHHHHHHHCSCCGGGGTTSC-TTSCHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHhCcCCHHHHHHHH-CCCCHHHHHHHHhhcc
Confidence 4699999999999999999 5799999776 4799999999998764
No 41
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=88.56 E-value=0.29 Score=39.95 Aligned_cols=48 Identities=21% Similarity=0.522 Sum_probs=38.2
Q ss_pred CCChHHHHHHHHHhhhcCc---ceeEEecCCCCCCCHHHHHHHHHHHHHHHH
Q 017891 43 MWTKEETDQLFELCERFDL---RFIVIADRFPSSRTVEELKDRYYGVSRAIL 91 (364)
Q Consensus 43 ~Wt~eETd~LfdLc~~fDL---Rw~VI~DRy~~~RtvEdLK~RyY~V~~~l~ 91 (364)
-||+||-.-++..|++=+- .|.+|+-.. .+||-+++++|||...+-+-
T Consensus 35 lWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L-~Nks~nqV~~RFq~Lm~Lf~ 85 (95)
T 1ug2_A 35 LWTREADRVILTMCQEQGAQPHTFSVISQQL-GNKTPVEVSHRFRELMQLFH 85 (95)
T ss_dssp SSCHHHHHHHHHHHHHTTSCTTTHHHHHHHH-SSCCHHHHHHHHHHHHHHHH
T ss_pred EeccccCHHHHHHHHhcCCChhHHHHHHHHH-ccCCHHHHHHHHHHHHHHHH
Confidence 5999999999999999765 666655332 36999999999999987433
No 42
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=83.25 E-value=0.64 Score=34.65 Aligned_cols=45 Identities=20% Similarity=0.449 Sum_probs=39.0
Q ss_pred CCCCCChHHHHHHHHHhhhcCcceeEEecCCCCCCCHHHHHHHHH
Q 017891 40 TDPMWTKEETDQLFELCERFDLRFIVIADRFPSSRTVEELKDRYY 84 (364)
Q Consensus 40 ~d~~Wt~eETd~LfdLc~~fDLRw~VI~DRy~~~RtvEdLK~RyY 84 (364)
..+.||.+|.....+-+..|+=-|.-|+--+-+.+|+.|+..=||
T Consensus 8 ~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY 52 (63)
T 2yqk_A 8 IEKCWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITFYY 52 (63)
T ss_dssp CCCSCCHHHHHHHHHHHHHTCSCHHHHHHHSCTTSCHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHHhCccHHHHHHHHcCCCcHHHHHHHHh
Confidence 457899999999889999999999999854556899999998777
No 43
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=80.47 E-value=0.57 Score=43.92 Aligned_cols=45 Identities=20% Similarity=0.369 Sum_probs=40.2
Q ss_pred CCCCChHHHHHHHHHhhhcCcceeEEecCCCCCCCHHHHHHHHHHH
Q 017891 41 DPMWTKEETDQLFELCERFDLRFIVIADRFPSSRTVEELKDRYYGV 86 (364)
Q Consensus 41 d~~Wt~eETd~LfdLc~~fDLRw~VI~DRy~~~RtvEdLK~RyY~V 86 (364)
...||.+|...+.+..+.|+=.|.-|++- -..||+.+.|..||.-
T Consensus 133 s~~WTeEE~~lFleAl~kYGKDW~~IAk~-VgTKT~~QcKnfY~~~ 177 (235)
T 2iw5_B 133 NARWTTEEQLLAVQAIRKYGRDFQAISDV-IGNKSVVQVKNFFVNY 177 (235)
T ss_dssp CSSCCHHHHHHHHHHHHHHSSCHHHHHHH-HSSCCHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHCcCHHHHHHH-cCCCCHHHHHHHHHHH
Confidence 45899999999999999999999999976 4579999999999843
No 44
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=81.13 E-value=0.35 Score=37.46 Aligned_cols=44 Identities=14% Similarity=0.512 Sum_probs=38.5
Q ss_pred CCChHHHHHHHHHhhhcCc---ceeEEecCCCCCCCHHHHHHHHHHHHH
Q 017891 43 MWTKEETDQLFELCERFDL---RFIVIADRFPSSRTVEELKDRYYGVSR 88 (364)
Q Consensus 43 ~Wt~eETd~LfdLc~~fDL---Rw~VI~DRy~~~RtvEdLK~RyY~V~~ 88 (364)
-||+||-.-++.-|++=+- .|.+|+-.. +||-+++++||-...+
T Consensus 16 lWTReeDR~IL~~cq~~G~s~~tfa~iA~~L--nks~~QV~~RF~~Lm~ 62 (70)
T 2lr8_A 16 LWTRNDDRVILLECQKRGPSSKTFAYLAAKL--DKNPNQVSERFQQLMK 62 (70)
Confidence 5999999999999999888 899999776 7999999999976544
No 45
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=73.57 E-value=2.1 Score=32.58 Aligned_cols=47 Identities=19% Similarity=0.373 Sum_probs=40.7
Q ss_pred CCCChHHHHHHHHHhhhcCcceeEEecCCCCCCCHHHHHHHHHHHHHH
Q 017891 42 PMWTKEETDQLFELCERFDLRFIVIADRFPSSRTVEELKDRYYGVSRA 89 (364)
Q Consensus 42 ~~Wt~eETd~LfdLc~~fDLRw~VI~DRy~~~RtvEdLK~RyY~V~~~ 89 (364)
+.||.+|.....+-...|+=-|.-|+--+-+.+|+.|+..=|| ..++
T Consensus 9 ~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY-~wKk 55 (70)
T 2crg_A 9 EEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYY-MWKT 55 (70)
T ss_dssp CCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHH-HHHT
T ss_pred CCCCHHHHHHHHHHHHHhCccHHHHHHHHcCCCCHHHHHHHHH-hhcC
Confidence 5799999998888899999999999954678899999998888 4554
No 46
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=67.58 E-value=2.9 Score=39.40 Aligned_cols=47 Identities=15% Similarity=0.307 Sum_probs=41.1
Q ss_pred CCCCChHHHHHHHHHhhhcCcc------eeEEecCCCCCCCHHHHHHHHHHHHH
Q 017891 41 DPMWTKEETDQLFELCERFDLR------FIVIADRFPSSRTVEELKDRYYGVSR 88 (364)
Q Consensus 41 d~~Wt~eETd~LfdLc~~fDLR------w~VI~DRy~~~RtvEdLK~RyY~V~~ 88 (364)
-..||.||-..|+++.++|+-+ |-.|+ .+-+.||--.+|+||..--+
T Consensus 8 k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IA-k~LpGRT~nsIRnRw~~~L~ 60 (246)
T 1ign_A 8 KASFTDEEDEFILDVVRKNPTRRTTHTLYDEIS-HYVPNHTGNSIRHRFRVYLS 60 (246)
T ss_dssp CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHT-TTSTTSCHHHHHHHHHHTTG
T ss_pred CCCCCHHHHHHHHHHHHHhCcCccccccHHHHH-HHcCCCCHHHHHHHHHHHHh
Confidence 3589999999999999999987 99999 46678999999999998433
No 47
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=64.08 E-value=4.5 Score=35.87 Aligned_cols=44 Identities=14% Similarity=0.224 Sum_probs=31.2
Q ss_pred CCCChHHHHHHHHHhhhcC---cceeEEecCCC-CCCCHHHHHHHHHHH
Q 017891 42 PMWTKEETDQLFELCERFD---LRFIVIADRFP-SSRTVEELKDRYYGV 86 (364)
Q Consensus 42 ~~Wt~eETd~LfdLc~~fD---LRw~VI~DRy~-~~RtvEdLK~RyY~V 86 (364)
.+||+.|+..|.--|.+|+ -||=.|..--. ..+|.+||++ ||.+
T Consensus 8 ~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~-y~~~ 55 (211)
T 4b4c_A 8 KGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRR-LGEL 55 (211)
T ss_dssp CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHH-HHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHH-HHHH
Confidence 4799999999999999998 24433331111 3689999996 5544
No 48
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=61.56 E-value=2.4 Score=32.89 Aligned_cols=56 Identities=18% Similarity=0.299 Sum_probs=43.2
Q ss_pred CCCCChHHHHHHHHHhhhcCcce----------eEEecCC---CCCCCHHHHHHHHHHHHHHHHHhcCC
Q 017891 41 DPMWTKEETDQLFELCERFDLRF----------IVIADRF---PSSRTVEELKDRYYGVSRAILIARAP 96 (364)
Q Consensus 41 d~~Wt~eETd~LfdLc~~fDLRw----------~VI~DRy---~~~RtvEdLK~RyY~V~~~l~~~r~~ 96 (364)
...||.+||..|+++....+.+| -.|++.. +..||.+..++++=++.+.+-..+..
T Consensus 4 ~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~Yk~~k~~ 72 (86)
T 2ebi_A 4 AETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKEFKKAKHH 72 (86)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCSCSSC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 36799999999999999877764 3444432 24799999999998888887777654
No 49
>2gm2_A Conserved hypothetical protein; MTH938-like fold, structural genomics, PSI, protein structure initiative; NMR {Xanthomonas campestris PV}
Probab=61.09 E-value=4.4 Score=34.38 Aligned_cols=32 Identities=22% Similarity=0.178 Sum_probs=27.8
Q ss_pred HHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHH
Q 017891 242 KRVEQALQELGVNLKPKVPTKAVCAEHLELRKE 274 (364)
Q Consensus 242 K~Ie~~L~ELgv~~kP~mPT~~Vc~~f~eLR~~ 274 (364)
..+...|.+.||..-. |+|.+-|..||.|..+
T Consensus 81 p~~~~~l~~~GI~vE~-m~T~aAcrTyNiL~~E 112 (132)
T 2gm2_A 81 TDVLAACLTRGIGLEA-MTNAAAARTYNVLASE 112 (132)
T ss_dssp HHHHHHHHHHTCEEEE-ECHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCEEEE-eCHHHHHHHHHHHHhC
Confidence 4577899999999776 9999999999999864
No 50
>2fvt_A Conserved hypothetical protein; MTH938-like fold, structural genomics, PSI, protein structure initiative; NMR {Rhodopseudomonas palustris} SCOP: c.103.1.1
Probab=59.11 E-value=4.4 Score=34.57 Aligned_cols=32 Identities=19% Similarity=0.206 Sum_probs=27.7
Q ss_pred HHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHH
Q 017891 242 KRVEQALQELGVNLKPKVPTKAVCAEHLELRKE 274 (364)
Q Consensus 242 K~Ie~~L~ELgv~~kP~mPT~~Vc~~f~eLR~~ 274 (364)
..+...|.+.||.+-. |+|.+-|..||.|..+
T Consensus 84 p~l~~~l~~~GI~vE~-M~T~aAcrTyNiL~~E 115 (135)
T 2fvt_A 84 RQLREALRGVNVVLDT-MQTGPAIRTYNIMIGE 115 (135)
T ss_dssp HHHHHHHHTTTCEEEE-ECHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCEEEE-eCHHHHHHHHHHHHhC
Confidence 4677889999999776 9999999999999864
No 51
>2ab1_A Hypothetical protein; HS.95870, DUF498, structural genomics, protein structure INI PSI, center for eukaryotic structural genomics, CESG; 2.59A {Homo sapiens} SCOP: c.103.1.1 PDB: 2q4q_A
Probab=57.52 E-value=4.5 Score=33.81 Aligned_cols=32 Identities=16% Similarity=0.245 Sum_probs=27.8
Q ss_pred HHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHH
Q 017891 242 KRVEQALQELGVNLKPKVPTKAVCAEHLELRKE 274 (364)
Q Consensus 242 K~Ie~~L~ELgv~~kP~mPT~~Vc~~f~eLR~~ 274 (364)
..+...|.+.||..-. |+|.+-|..||.|..+
T Consensus 79 ~~~~~~l~~~gI~ve~-m~T~~A~rtyN~L~~E 110 (122)
T 2ab1_A 79 SSTVEYLKKHGIDVRV-LQTEQAVKEYNALVAQ 110 (122)
T ss_dssp HHHHHHHHHTTCEEEE-ECHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCEEEE-eCHHHHHHHHHHHHhC
Confidence 5678899999999776 9999999999999764
No 52
>2fi9_A Outer membrane protein; bartonella hense protein structure initiative, midwest center for structural genomics, MCSG; 1.80A {Bartonella henselae} SCOP: c.103.1.1
Probab=56.20 E-value=4.9 Score=33.75 Aligned_cols=32 Identities=19% Similarity=0.113 Sum_probs=27.6
Q ss_pred HHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHH
Q 017891 242 KRVEQALQELGVNLKPKVPTKAVCAEHLELRKE 274 (364)
Q Consensus 242 K~Ie~~L~ELgv~~kP~mPT~~Vc~~f~eLR~~ 274 (364)
..+...|.+.||..-. |+|.+-|..||.|..+
T Consensus 85 p~~~~~l~~~GI~vE~-m~T~aAcrtyNiL~~E 116 (128)
T 2fi9_A 85 EELRVLLWEKRISSDT-MSTGAAVRTFNVLLAE 116 (128)
T ss_dssp HHHHHHHHHTTCEEEE-ECHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCEEEE-eCHHHHHHHHHHHHhC
Confidence 4577899999999776 9999999999999764
No 53
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=50.23 E-value=9.7 Score=30.45 Aligned_cols=53 Identities=26% Similarity=0.344 Sum_probs=42.7
Q ss_pred HHHHHhhhCCCCCChHHHHHHHHHhhhcCcceeEEecCCCCCCCHHHHHHHHHH
Q 017891 32 DEEYEKYLTDPMWTKEETDQLFELCERFDLRFIVIADRFPSSRTVEELKDRYYG 85 (364)
Q Consensus 32 deEY~~~L~d~~Wt~eETd~LfdLc~~fDLRw~VI~DRy~~~RtvEdLK~RyY~ 85 (364)
...|...-.-+.||.+|-....+-...|+=.|..|++ +-+.||+.|+-+=||.
T Consensus 34 ~~~~~~r~~~~~WT~eE~~~F~~~~~~~gK~F~~Ia~-~l~~Kt~~~cV~~YY~ 86 (94)
T 4a69_C 34 MKVYKDRQVMNMWSEQEKETFREKFMQHPKNFGLIAS-FLERKTVAECVLYYYL 86 (94)
T ss_dssp HHHHHHHHHTCCCCHHHHHHHHHHHHHSTTCHHHHHH-TCTTCCHHHHHHHHHH
T ss_pred HHHHhccCCCCCCCHHHHHHHHHHHHHcCCCHHHHHH-HcCCCCHHHHHHHHhc
Confidence 3445443234689999999999999999999999975 4578999999999985
No 54
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=49.27 E-value=29 Score=26.09 Aligned_cols=35 Identities=17% Similarity=0.140 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 017891 262 KAVCAEHLELRKEILTLLNLQKQLQYKEAEGSSYR 296 (364)
Q Consensus 262 ~~Vc~~f~eLR~~Iv~LLeLKK~l~k~E~El~~lr 296 (364)
..+...-++|+..=..+-+||+.++.++.||+++|
T Consensus 42 ~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~slk 76 (77)
T 3trt_A 42 EAANRNNDALRQAKQESTEYRRQVQSLTMEVDALK 76 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34555556788888889999999999999999886
No 55
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=35.93 E-value=24 Score=22.96 Aligned_cols=28 Identities=29% Similarity=0.479 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhccccc
Q 017891 270 ELRKEILTLLNLQKQLQYKEAEGSSYRDGSY 300 (364)
Q Consensus 270 eLR~~Iv~LLeLKK~l~k~E~El~~lr~~~~ 300 (364)
.|..+|.. |+|.+..+.+||..|++.|+
T Consensus 6 alkqeiaa---lkkeiaalkfeiaalkqgyy 33 (33)
T 4dzn_A 6 ALKQEIAA---LKKEIAALKFEIAALKQGYY 33 (33)
T ss_dssp HHHHHHHH---HHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHcccC
Confidence 35566654 68899999999999987653
No 56
>2yf2_A C4B binding protein; immune system, complement system; 2.24A {Gallus gallus}
Probab=35.48 E-value=71 Score=23.68 Aligned_cols=37 Identities=27% Similarity=0.363 Sum_probs=22.4
Q ss_pred HHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhhhhh
Q 017891 242 KRVEQALQELGVNLKPKVPTKAVCAEHLELRKEILTLLNLQKQ---LQYKEAEGSSY 295 (364)
Q Consensus 242 K~Ie~~L~ELgv~~kP~mPT~~Vc~~f~eLR~~Iv~LLeLKK~---l~k~E~El~~l 295 (364)
.-|..+..++|+ ||+++ -+||++||- ++|++-|+.-|
T Consensus 14 ayiqsvv~DC~~------P~~~~-----------rTLLEi~KL~LEIQKL~~EL~gl 53 (65)
T 2yf2_A 14 AYIQSVVSDCHV------PTEDV-----------KTLLEIRKLFLEIQKLKVELQGL 53 (65)
T ss_dssp HHHHHHHHHHTS------CHHHH-----------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCC------cHHHH-----------HHHHHHHHHHHHHHHHHHHHcch
Confidence 346778889998 46543 455555553 45666665543
No 57
>4d9a_A 2-pyrone-4,6-dicarbaxylate hydrolase; structural genomics, protein structure initiative; HET: 0GY; 1.35A {Sphingomonas paucimobilis} PDB: 4d95_A* 4di8_A* 4di9_A* 4d9d_A 4dia_A 2qah_A 4d8l_A
Probab=35.16 E-value=58 Score=30.14 Aligned_cols=64 Identities=9% Similarity=-0.012 Sum_probs=45.8
Q ss_pred CCCCccccccccccccCCHHHHHhhhC----------CCCCChHHHHHHHHHhhhcCcceeEEecCCCCCCCHHHH
Q 017891 14 GDYSFAKYNKSVDVVKYTDEEYEKYLT----------DPMWTKEETDQLFELCERFDLRFIVIADRFPSSRTVEEL 79 (364)
Q Consensus 14 ~~y~FaKfN~~v~ip~ytdeEY~~~L~----------d~~Wt~eETd~LfdLc~~fDLRw~VI~DRy~~~RtvEdL 79 (364)
..||+..- -...-..||-++|...|. ...|...++++|.+.|+++.=||.-|+ -.+...+.++|
T Consensus 39 ~~~p~~~~-~~~~~~~~~~e~l~~~m~~~GI~~~Vlvq~~~~~~dN~~ll~~l~~~~~r~~Gva-~vdp~~~~~eL 112 (303)
T 4d9a_A 39 AQFPFSPK-AKYLPRDAGPDMLFALRDHLGFARNVIVQASCHGTDNAATLDAIARAQGKARGIA-VVDPAIDEAEL 112 (303)
T ss_dssp TTSCCCTT-CSCCBCCBCHHHHHHHHHHHTCSEEEEECCGGGTTCCHHHHHHHHHTTTSEEEEE-CCCTTCCHHHH
T ss_pred ccCCCCCC-CCCcCCCCCHHHHHHHHHHcCCCeEEEeccccccccHHHHHHHHHhCCCcEEEEE-EeCCCCCHHHH
Confidence 46888742 222235899999988874 467888899999998889988887777 33344456666
No 58
>3cpk_A Uncharacterized protein Q7W7N7_borpa; BPP2477, BER31, NESG, structural genomics, PSI-2, protein structure initiative; 2.50A {Bordetella parapertussis 12822} PDB: 2k2e_A
Probab=32.36 E-value=17 Score=31.69 Aligned_cols=32 Identities=22% Similarity=0.230 Sum_probs=27.3
Q ss_pred HHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHH
Q 017891 242 KRVEQALQELGVNLKPKVPTKAVCAEHLELRKE 274 (364)
Q Consensus 242 K~Ie~~L~ELgv~~kP~mPT~~Vc~~f~eLR~~ 274 (364)
..+...|.+.||.+-. |.|.+-|..||.|..+
T Consensus 105 p~~~~~L~~~GIgvE~-M~T~aA~rTyNiL~~E 136 (150)
T 3cpk_A 105 PEQVRPLLAMGVGVEA-MDTQAAARTYNILMAE 136 (150)
T ss_dssp HHHHHHHHTTTCEEEE-ECHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCEEEE-eCHHHHHHHHHHHHhC
Confidence 4577889999998765 9999999999999764
No 59
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=32.36 E-value=37 Score=32.77 Aligned_cols=61 Identities=28% Similarity=0.390 Sum_probs=44.1
Q ss_pred cccCCHHH---HHhhhCC--CCCChHHHHHHHHHhhhcCc-ceeEEecCCCCCCCHHHHHHHHHHHHHH
Q 017891 27 VVKYTDEE---YEKYLTD--PMWTKEETDQLFELCERFDL-RFIVIADRFPSSRTVEELKDRYYGVSRA 89 (364)
Q Consensus 27 ip~ytdeE---Y~~~L~d--~~Wt~eETd~LfdLc~~fDL-Rw~VI~DRy~~~RtvEdLK~RyY~V~~~ 89 (364)
...+|+|| -+++|.. .+||+.+--....-|..|+- .|--|+.=+ ...|+||+ .+||.|.=.
T Consensus 91 ~~~LTeeE~~eKe~Ll~eGF~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev-~~Kt~eEV-~~Y~~vFw~ 157 (304)
T 1ofc_X 91 AEPLTEEEIQEKENLLSQGFTAWTKRDFNQFIKANEKYGRDDIDNIAKDV-EGKTPEEV-IEYNAVFWE 157 (304)
T ss_dssp CCCCCHHHHHHHHHHTTSSCTTCCHHHHHHHHHHHHHHCTTCHHHHTTSS-TTCCHHHH-HHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhhhcccCHHHHHHHHHHHHHhCHHHHHHHHHHh-cCCCHHHH-HHHHHHHHH
Confidence 34578776 4566664 48999999999999999985 233333322 36999999 889988653
No 60
>3sgv_B Undecaprenyl pyrophosphate synthase; alpha/beta, transferase; HET: 2BJ; 1.61A {Escherichia coli} PDB: 1jp3_A* 1v7u_A* 1x06_A* 1x07_A* 2e98_A* 2e99_A* 2e9a_A* 2e9c_A* 2e9d_A* 1ueh_A 3sgt_B* 3qas_B* 3sgx_A* 3sh0_B* 3th8_A* 4h2j_A* 4h2m_A* 4h2o_B* 4h38_A* 4h3a_A* ...
Probab=30.44 E-value=19 Score=33.89 Aligned_cols=39 Identities=21% Similarity=0.469 Sum_probs=22.1
Q ss_pred ccccccCCHHHHHhhhCCCCCChHHHHHHHHHhhhc-----------CcceeEEecC
Q 017891 24 SVDVVKYTDEEYEKYLTDPMWTKEETDQLFELCERF-----------DLRFIVIADR 69 (364)
Q Consensus 24 ~v~ip~ytdeEY~~~L~d~~Wt~eETd~LfdLc~~f-----------DLRw~VI~DR 69 (364)
.++++.||-|-|.+ ..+|.+.||+|+++| +.|.-||-|+
T Consensus 64 ~lTlYaFStENwkR-------p~~EV~~Lm~L~~~~l~~~~~~l~~~~vrvr~iGd~ 113 (253)
T 3sgv_B 64 ALTLYAFSSENWNR-------PAQEVSALMELFVWALDSEVKSLHRHNVRLRIIGDT 113 (253)
T ss_dssp EEEEECC------------------CHHHHHHHHTTHHHHHHHHHHTTCEEEEESCG
T ss_pred EEEEEEEchhccCC-------CHHHHHHHHHHHHHHHHHHHHHHHHCCeEEEEEeeh
Confidence 35677788776642 568999999998765 6788888776
No 61
>2es9_A Putative cytoplasmic protein; structural genomics, PSI, protein structure initiative, NORT structural genomics consortium, NESG; 2.00A {Salmonella typhimurium} SCOP: a.247.1.1 PDB: 2jn8_A
Probab=26.61 E-value=55 Score=26.87 Aligned_cols=25 Identities=28% Similarity=0.339 Sum_probs=19.9
Q ss_pred hhccchhhHHHHHHHHHHHhCCCCC
Q 017891 232 ASSSAGLRTIKRVEQALQELGVNLK 256 (364)
Q Consensus 232 ~~~~~G~k~~K~Ie~~L~ELgv~~k 256 (364)
.|.+...+++|-|=-.|.|||||..
T Consensus 29 ~P~sMdESTAKGifKyL~elGvPas 53 (115)
T 2es9_A 29 VPHSMDESTAKGILKYLHDLGVPVS 53 (115)
T ss_dssp SCCHHHHHHHHHHHHHHHHTTCCCC
T ss_pred CCCccchHHHHHHHHHHHHcCCCCC
Confidence 4455556789999999999999854
No 62
>3ugs_B Undecaprenyl pyrophosphate synthase; niaid, csgid, structural genomics, center for structural GEN infectious diseases; HET: FFT; 2.46A {Campylobacter jejuni} SCOP: c.101.1.0
Probab=24.19 E-value=19 Score=33.42 Aligned_cols=38 Identities=29% Similarity=0.631 Sum_probs=27.8
Q ss_pred cccccCCHHHHHhhhCCCCCChHHHHHHHHHhhhc-----------CcceeEEecC
Q 017891 25 VDVVKYTDEEYEKYLTDPMWTKEETDQLFELCERF-----------DLRFIVIADR 69 (364)
Q Consensus 25 v~ip~ytdeEY~~~L~d~~Wt~eETd~LfdLc~~f-----------DLRw~VI~DR 69 (364)
++++.||-|-|.+ +.+|.+.||+|+++| +.|.-||-|+
T Consensus 54 lTlYaFStENw~R-------p~~EV~~Lm~L~~~~l~~~~~~l~~~~vrvr~iGd~ 102 (225)
T 3ugs_B 54 LSLFAFSTENWKR-------PKDEIDFIFELLDRCLDEALEKFEKNNVRLRAIGDL 102 (225)
T ss_dssp EEEEEEESGGGGS-------CHHHHHHHHHHHHHHHHHHHHHSTTTTEEEEEESCG
T ss_pred EEEEEEcccccCC-------CHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEEEeCh
Confidence 4566666655542 578999999998754 6788888776
No 63
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=23.19 E-value=17 Score=37.27 Aligned_cols=44 Identities=20% Similarity=0.386 Sum_probs=38.5
Q ss_pred CCCCChHHHHHHHHHhhhcCcceeEEecCCCCCCCHHHHHHHHHH
Q 017891 41 DPMWTKEETDQLFELCERFDLRFIVIADRFPSSRTVEELKDRYYG 85 (364)
Q Consensus 41 d~~Wt~eETd~LfdLc~~fDLRw~VI~DRy~~~RtvEdLK~RyY~ 85 (364)
...||.+|...+....++|+=.|--|++- -..+|+...|.-||.
T Consensus 380 ~~~WT~eE~~~f~~al~~yGkdw~~IA~~-VgTKT~~Qvk~fy~~ 423 (482)
T 2xag_B 380 NARWTTEEQLLAVQAIRKYGRDFQAISDV-IGNKSVVQVKNFFVN 423 (482)
T ss_dssp CSCCCHHHHHHHHHHHHHHTTCHHHHHHH-HSSCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCcCHHHHHHH-hCCCCHHHHHHHHHH
Confidence 45899999999999999999999999976 457999999997763
No 64
>3ku7_A MINE, cell division topological specificity factor; cell cycle; 2.80A {Helicobacter pylori} PDB: 3mcd_A
Probab=22.52 E-value=1.1e+02 Score=23.84 Aligned_cols=32 Identities=19% Similarity=0.263 Sum_probs=28.6
Q ss_pred cceeEEecCCCCCCCHHHHHHHHHHHHHHHHH
Q 017891 61 LRFIVIADRFPSSRTVEELKDRYYGVSRAILI 92 (364)
Q Consensus 61 LRw~VI~DRy~~~RtvEdLK~RyY~V~~~l~~ 92 (364)
|+.+++|||-..+-.++.||.=-+.|..+++.
T Consensus 23 LqliLa~dR~~~p~~l~~lk~eil~VIskYv~ 54 (80)
T 3ku7_A 23 LKLILAKERTLNLPYMEEMRKEIIAVIQKYTK 54 (80)
T ss_dssp EEEEEEEESSCCCTTHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHcC
Confidence 78999999954577999999999999999996
No 65
>2vg0_A Short-chain Z-isoprenyl diphosphate synthetase; peptidoglycan synthesis, cell WALL biogenesis/degradation, secreted, cell shape; HET: GPP; 1.7A {Mycobacterium tuberculosis} PDB: 2vfw_A* 2vg1_A*
Probab=22.52 E-value=25 Score=32.36 Aligned_cols=39 Identities=15% Similarity=0.132 Sum_probs=27.2
Q ss_pred cccccCCHHHHHhhhCCCCCChHHHHHHHHHhhh---------cCcceeEEecCC
Q 017891 25 VDVVKYTDEEYEKYLTDPMWTKEETDQLFELCER---------FDLRFIVIADRF 70 (364)
Q Consensus 25 v~ip~ytdeEY~~~L~d~~Wt~eETd~LfdLc~~---------fDLRw~VI~DRy 70 (364)
++++.||.|-|. =..+|.+.||+|++. +++|+-+|.|+-
T Consensus 51 lTlYaFSteN~k-------Rp~~Ev~~Lm~l~~~~l~~~~~~~~~vrv~~iG~~~ 98 (227)
T 2vg0_A 51 ATVYLLSTENLQ-------RDPDELAALIEIITDVVEEICAPANHWSVRTVGDLG 98 (227)
T ss_dssp EEEEEEETGGGG-------SCHHHHHHHHHHHHHHHHHHTCTTTCCEEEEESCGG
T ss_pred EEEEeecccccC-------CCHHHHHHHHHHHHHHHHHHhccccCeEEEecCChh
Confidence 455566544332 145899999999865 578999998763
No 66
>1ihn_A Hypothetical protein MTH938; methanobacterium thermoautotrophicum, unknown function; 2.20A {Methanothermobacterthermautotrophicus} SCOP: c.103.1.1
Probab=22.09 E-value=30 Score=28.47 Aligned_cols=17 Identities=24% Similarity=0.135 Sum_probs=15.1
Q ss_pred CCChHHHHHHHHHHHHH
Q 017891 258 KVPTKAVCAEHLELRKE 274 (364)
Q Consensus 258 ~mPT~~Vc~~f~eLR~~ 274 (364)
+|+|.+.|..||.|..+
T Consensus 85 ~M~T~aAcrTYNiL~~E 101 (113)
T 1ihn_A 85 VLPTCEAIKRYNEERSA 101 (113)
T ss_dssp EECHHHHHHHHHHHHHT
T ss_pred EcChHHHHHHHHHHHhC
Confidence 49999999999999864
Done!