Query 017892
Match_columns 364
No_of_seqs 230 out of 1195
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 04:19:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017892.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017892hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03193 beta-1,3-galactosyltr 100.0 2.5E-83 5.4E-88 634.5 28.8 340 3-346 5-377 (408)
2 KOG2288 Galactosyltransferases 100.0 7.3E-66 1.6E-70 478.1 15.6 233 111-346 8-242 (274)
3 PLN03133 beta-1,3-galactosyltr 100.0 1.1E-48 2.3E-53 407.3 23.0 220 111-340 382-609 (636)
4 KOG2287 Galactosyltransferases 100.0 1.6E-46 3.5E-51 371.9 21.6 224 113-346 94-322 (349)
5 PF01762 Galactosyl_T: Galacto 100.0 1.1E-46 2.3E-51 343.4 16.4 191 128-326 1-195 (195)
6 PTZ00210 UDP-GlcNAc-dependent 100.0 2.7E-31 5.8E-36 260.7 16.9 190 111-319 77-307 (382)
7 PF02434 Fringe: Fringe-like; 99.8 9E-20 2E-24 173.5 10.8 195 114-334 6-211 (252)
8 PF13334 DUF4094: Domain of un 99.8 5.6E-20 1.2E-24 150.1 3.8 77 17-95 1-95 (95)
9 KOG2246 Galactosyltransferases 99.6 8.7E-15 1.9E-19 146.0 12.2 173 109-325 86-268 (364)
10 PLN03153 hypothetical protein; 99.3 1.1E-10 2.3E-15 119.8 17.5 190 111-333 119-320 (537)
11 KOG3708 Uncharacterized conser 96.9 0.0062 1.3E-07 63.0 10.3 150 114-316 26-182 (681)
12 PF13641 Glyco_tranf_2_3: Glyc 95.6 0.34 7.3E-06 43.9 13.5 118 203-323 77-200 (228)
13 TIGR03472 HpnI hopanoid biosyn 95.3 0.41 8.9E-06 47.9 14.1 158 153-322 71-242 (373)
14 PF01755 Glyco_transf_25: Glyc 95.3 0.37 8E-06 43.5 12.4 93 119-228 5-101 (200)
15 PF13506 Glyco_transf_21: Glyc 94.6 0.048 1E-06 49.1 4.5 129 195-326 14-147 (175)
16 TIGR03469 HonB hopene-associat 94.5 2.6 5.6E-05 42.4 17.2 114 202-319 122-248 (384)
17 cd02525 Succinoglycan_BP_ExoA 93.4 5 0.00011 36.2 15.6 161 151-323 30-198 (249)
18 cd02520 Glucosylceramide_synth 92.8 6.6 0.00014 34.9 16.4 135 153-323 31-167 (196)
19 cd04192 GT_2_like_e Subfamily 91.8 6.8 0.00015 34.9 14.1 123 203-326 73-204 (229)
20 cd06532 Glyco_transf_25 Glycos 91.8 2 4.3E-05 36.4 9.9 111 119-299 3-118 (128)
21 cd04186 GT_2_like_c Subfamily 90.5 9.3 0.0002 31.8 14.2 83 208-321 70-153 (166)
22 cd02510 pp-GalNAc-T pp-GalNAc- 90.3 12 0.00026 35.7 15.1 126 204-329 75-223 (299)
23 PF13632 Glyco_trans_2_3: Glyc 90.1 0.96 2.1E-05 40.0 6.8 115 215-333 1-126 (193)
24 cd04185 GT_2_like_b Subfamily 90.1 13 0.00028 32.8 14.6 107 197-331 65-173 (202)
25 cd06439 CESA_like_1 CESA_like_ 90.0 7.7 0.00017 35.5 12.9 114 203-322 100-218 (251)
26 PF00535 Glycos_transf_2: Glyc 89.9 4.8 0.0001 33.3 10.6 92 203-294 69-168 (169)
27 cd04196 GT_2_like_d Subfamily 89.5 8.2 0.00018 33.9 12.3 120 207-328 74-200 (214)
28 cd02526 GT2_RfbF_like RfbF is 89.0 12 0.00026 33.7 13.3 133 197-331 61-204 (237)
29 cd06423 CESA_like CESA_like is 87.0 9.7 0.00021 31.3 10.6 94 202-295 68-170 (180)
30 cd06421 CESA_CelA_like CESA_Ce 85.8 25 0.00055 31.4 16.6 123 204-331 76-211 (234)
31 cd06420 GT2_Chondriotin_Pol_N 85.7 5.5 0.00012 34.3 8.6 97 203-319 70-166 (182)
32 PRK11204 N-glycosyltransferase 85.7 42 0.00091 33.7 17.5 146 170-326 98-255 (420)
33 cd06433 GT_2_WfgS_like WfgS an 84.8 7.8 0.00017 33.4 9.2 113 202-319 65-180 (202)
34 cd04187 DPM1_like_bac Bacteria 83.8 7.6 0.00017 33.7 8.7 134 152-296 29-164 (181)
35 cd06434 GT2_HAS Hyaluronan syn 83.1 5.4 0.00012 36.0 7.7 155 153-321 29-201 (235)
36 cd06442 DPM1_like DPM1_like re 82.2 24 0.00052 31.4 11.6 90 205-295 71-167 (224)
37 cd06427 CESA_like_2 CESA_like_ 82.0 27 0.00058 32.0 12.1 118 202-322 74-201 (241)
38 PRK14583 hmsR N-glycosyltransf 80.4 59 0.0013 33.3 15.0 158 152-323 104-271 (444)
39 cd04195 GT2_AmsE_like GT2_AmsE 79.8 40 0.00087 29.4 12.0 116 203-326 71-196 (201)
40 PF04646 DUF604: Protein of un 79.5 3.1 6.7E-05 40.0 4.8 53 280-332 12-68 (255)
41 TIGR03111 glyc2_xrt_Gpos1 puta 78.4 42 0.00091 34.4 13.2 111 202-315 121-248 (439)
42 cd04184 GT2_RfbC_Mx_like Myxoc 78.0 46 0.001 29.0 17.0 114 203-322 74-190 (202)
43 COG1216 Predicted glycosyltran 75.9 17 0.00037 35.1 9.1 134 180-319 55-206 (305)
44 cd02514 GT13_GLCNAC-TI GT13_GL 73.5 12 0.00026 37.5 7.4 104 193-308 78-185 (334)
45 TIGR01556 rhamnosyltran L-rham 73.2 83 0.0018 29.5 13.5 127 202-331 64-201 (281)
46 COG1215 Glycosyltransferases, 72.1 1.1E+02 0.0024 30.5 14.6 164 153-326 85-260 (439)
47 cd02522 GT_2_like_a GT_2_like_ 66.1 64 0.0014 28.5 10.0 111 204-320 64-174 (221)
48 PRK10714 undecaprenyl phosphat 65.7 99 0.0021 30.4 12.0 134 152-296 38-174 (325)
49 cd06437 CESA_CaSu_A2 Cellulose 65.1 24 0.00052 32.0 7.1 121 203-329 78-211 (232)
50 PF10111 Glyco_tranf_2_2: Glyc 64.8 1.3E+02 0.0029 28.6 14.0 165 150-321 32-210 (281)
51 cd06435 CESA_NdvC_like NdvC_li 64.7 1.1E+02 0.0023 27.5 14.9 117 203-325 73-203 (236)
52 PLN02726 dolichyl-phosphate be 61.6 1.3E+02 0.0028 27.5 14.3 115 203-323 84-210 (243)
53 cd00761 Glyco_tranf_GTA_type G 60.7 82 0.0018 24.9 11.4 35 202-236 67-101 (156)
54 cd04190 Chitin_synth_C C-termi 59.3 16 0.00036 33.9 4.9 109 211-319 72-206 (244)
55 cd04179 DPM_DPG-synthase_like 58.2 93 0.002 26.5 9.3 92 202-295 69-167 (185)
56 TIGR03030 CelA cellulose synth 55.5 2.5E+02 0.0055 30.9 14.0 133 195-331 212-358 (713)
57 cd04188 DPG_synthase DPG_synth 51.3 1.4E+02 0.0031 26.4 9.6 89 152-248 30-119 (211)
58 cd06913 beta3GnTL1_like Beta 1 49.2 1.9E+02 0.0042 25.7 11.4 44 204-247 76-119 (219)
59 COG4092 Predicted glycosyltran 44.0 86 0.0019 30.9 7.1 163 147-315 33-214 (346)
60 cd06438 EpsO_like EpsO protein 41.4 2.3E+02 0.0051 24.4 10.5 89 201-293 69-169 (183)
61 PF09258 Glyco_transf_64: Glyc 32.1 50 0.0011 31.5 3.5 99 212-316 75-180 (247)
62 PF03071 GNT-I: GNT-I family; 32.1 2.7E+02 0.0059 29.1 9.0 90 200-297 175-272 (434)
63 PHA01631 hypothetical protein 30.0 1.3E+02 0.0028 27.4 5.5 91 180-296 39-132 (176)
64 PLN03181 glycosyltransferase; 29.9 2.3E+02 0.005 29.6 7.9 93 130-225 108-211 (453)
65 PRK14716 bacteriophage N4 adso 29.7 7E+02 0.015 26.4 13.2 107 212-322 158-278 (504)
66 PRK05454 glucosyltransferase M 28.2 6E+02 0.013 28.1 11.4 199 111-325 121-350 (691)
67 cd06436 GlcNAc-1-P_transferase 24.4 54 0.0012 29.0 2.2 77 213-294 90-178 (191)
68 PF04666 Glyco_transf_54: N-Ac 24.0 3E+02 0.0065 27.1 7.4 23 212-234 169-191 (297)
69 PRK11498 bcsA cellulose syntha 21.8 2.5E+02 0.0055 31.9 7.1 123 195-322 323-458 (852)
70 PHA02688 ORF059 IMV protein VP 21.3 3E+02 0.0066 27.5 6.8 96 197-296 97-199 (323)
71 PF06072 Herpes_US9: Alphaherp 20.6 93 0.002 23.5 2.4 15 22-36 43-57 (60)
No 1
>PLN03193 beta-1,3-galactosyltransferase; Provisional
Probab=100.00 E-value=2.5e-83 Score=634.52 Aligned_cols=340 Identities=42% Similarity=0.728 Sum_probs=296.2
Q ss_pred CCCCcCcccccccchhhHHHHHHHHHHHHHHHHhccccccchhhHHHH------HHhhhh-ccCCccc----c---cccC
Q 017892 3 SRGSSNKLSSMIARTRISSLLLSMFATFASIYVAGRLWQDAQTRVRLI------KELDRI-TGYGKSA----I---SVDD 68 (364)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~-~~~~~~~----~---~~~~ 68 (364)
+|| .+.++++..|++|+++||++||++|++|++|||..||.....+ ++++.. ++|+.+. . ...|
T Consensus 5 ~~~--~~~~~~~~~~~~~~~~~~~~~f~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~ 82 (408)
T PLN03193 5 SRG--EEYSSRSVVSRKWTLLLCLGCFCAGMLFTDRMWTIPESKGISRTTVTEAERLKLVSEGCDPKTLYQKEVKRDSKD 82 (408)
T ss_pred ccc--ccccccccccHHHHHHHHHHHHHHHHhhccccccCCccccccccccchhhhhhhhccccccccccccccccchhH
Confidence 567 6788999999999999999999999999999999998766543 233333 3554432 1 2234
Q ss_pred ch-hhh----hhhHHHHHHHHHhhhhhhhccccc--ccCCCCC----CCCCCCCCCceEEEEEeCCCCCHHHHHHHHHHH
Q 017892 69 TL-KII----ACREQRKKLLELEMQLAAAGQEGF--KSKGSTD----TDDKDPKKRPLVVIGILTRFGRKNNRDAIRKAW 137 (364)
Q Consensus 69 ~~-~~~----~~~~~~~~~~~~~~~l~~a~~~~~--~~~~~~~----~~~~~~~~~~~llI~V~S~~~~~~rR~aIR~TW 137 (364)
.| +|. |+++|+|+|+.||||||+|++.++ ..+.++. ..+...++++++||+|+|+|+|++||++||+||
T Consensus 83 ~~~~~~~t~~~~~~~~~~~~~le~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LvIgI~Sap~~~~RR~AIR~TW 162 (408)
T PLN03193 83 IIGEVSKTHNAIQTLDKTISNLEMELAAARAAQESILNGSPISEDLKKTQSSGKRRYLMVVGINTAFSSRKRRDSVRATW 162 (408)
T ss_pred HHHHHhhHHHHHHHHhhhhhHHhHHHHHHHhhhhhhccCCCccccccccCCCCcceEEEEEEEeCCCCCHHHHHHHHHHH
Confidence 44 554 889999999999999999999666 3332222 124566778999999999999999999999999
Q ss_pred hcCcchhhccccCCCeEEEEEeecCCCCCCcchhhhHHhhhhCCCeeeeCCCCCCCCCchHHHHHHHHHHHhCCCccEEE
Q 017892 138 MGTGAALKKRENEKGIITRFVIGRSANRGDSLDQDIDSENKQTNDFFILDHHVEAPKEFPNKAKLFFAYAVDKWDAEYYA 217 (364)
Q Consensus 138 ~~~~~~lk~Le~~~~i~v~FvvG~s~~~~~~~~~~I~~E~~~~~Dil~l~d~~Dsy~nLt~Kt~~~~~wa~~~~~a~f~l 217 (364)
|+++..+++++.+.+|+++||||++.++++.++++|++|+++|||||++ ||+|+|.|||.||+++|+|+.++|+++||+
T Consensus 163 g~~~~~~~kle~~~gv~vrFVIG~s~~~~~~ldr~Le~Ea~~ygDIL~l-DfvDsY~NLT~KTl~~f~wA~~~~dAkF~m 241 (408)
T PLN03193 163 MPQGEKRKKLEEEKGIIIRFVIGHSATSGGILDRAIEAEDRKHGDFLRL-DHVEGYLELSAKTKTYFATAVAMWDADFYV 241 (408)
T ss_pred cCCcccccccccCCcEEEEEEeecCCCcchHHHHHHHHHHHHhCCEEEE-ecccccccchHHHHHHHHHHHHcCCCeEEE
Confidence 9998777788888999999999999876568999999999999999998 699999999999999999999999999999
Q ss_pred EEcCeeeecHHHHHHHHhhcCCCCceEEEEeecCcccccCCCccccCCccccC-CCCCcCcCccCCeEeeCHHHHHHHHH
Q 017892 218 KVNDDVYVNIDSLGATLATHLDKPRVYIGCMKSGDVFSEPGHKWYEPDWWKFG-DKKLYFRHASGEMYVISRALAKFISI 296 (364)
Q Consensus 218 KvDDDvfVnl~~L~~~L~~~~~~~~lyiG~~~~~~v~r~~~~Kwy~p~~w~~y-~~~~Yp~y~~G~gYvlS~dla~~I~~ 296 (364)
|+|||+|||+++|+.+|..+..++++|+|||+.+|+..+++.|||+|+||+|+ +++.|||||+|++||||+|+|++|+.
T Consensus 242 K~DDDvfVnv~~L~~~L~~~~~~~rlYiG~m~~gPvr~~~~~ky~epe~w~~~~~~~~YPpyAsG~gYVlS~DLa~~I~~ 321 (408)
T PLN03193 242 KVDDDVHVNIATLGETLVRHRKKPRVYIGCMKSGPVLSQKGVRYHEPEYWKFGENGNKYFRHATGQLYAISKDLASYISI 321 (408)
T ss_pred EcCCCceEcHHHHHHHHHhcCCCCCEEEEecccCccccCCCCcCcCcccccccCccccCCCCCCcceEEehHHHHHHHHh
Confidence 99999999999999999988777889999999887666678889999999986 68999999999999999999999999
Q ss_pred hcccCCCCCcchHHHHHHHhcCCCeEecCCCcccCCCC-------CCCcccceeeee
Q 017892 297 NRSILRTYAHDDVSAGSWFLGLDVKYLNEGKFCCSSWS-------SGLSSLSLSFTH 346 (364)
Q Consensus 297 ~~~~l~~~~~EDV~vG~~l~~l~V~~i~~~~f~~~~~~-------~~~~C~~~sf~~ 346 (364)
+...+++|++|||++|+|+.+|+|+|+|+++|||++++ +|++|+ ++|++
T Consensus 322 n~~~L~~y~~EDV~vG~Wl~~L~V~~vdd~~fcc~~~~~C~~~~~~~~~c~-~~~~~ 377 (408)
T PLN03193 322 NQHVLHKYANEDVSLGSWFIGLDVEHIDDRRLCCGTPPDCEWKAQAGNICV-ASFDW 377 (408)
T ss_pred ChhhhcccCcchhhhhhHhccCCceeeecccccCCCCccccccccCCCeeE-EEecc
Confidence 99999999999999999999999999999999998764 499999 59998
No 2
>KOG2288 consensus Galactosyltransferases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=7.3e-66 Score=478.11 Aligned_cols=233 Identities=52% Similarity=0.978 Sum_probs=224.2
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHHHHhcCcchhhccccCCCeEEEEEeecCCCCCCcchhhhHHhhhhCCCeeeeCCCC
Q 017892 111 KKRPLVVIGILTRFGRKNNRDAIRKAWMGTGAALKKRENEKGIITRFVIGRSANRGDSLDQDIDSENKQTNDFFILDHHV 190 (364)
Q Consensus 111 ~~~~~llI~V~S~~~~~~rR~aIR~TW~~~~~~lk~Le~~~~i~v~FvvG~s~~~~~~~~~~I~~E~~~~~Dil~l~d~~ 190 (364)
+++++++|+|.|+|++.+||+++|+|||++++.|++||.++||.+|||||+ ++.+++++++|++|.++|+|+|+|++|+
T Consensus 8 ~~k~l~vigI~T~f~s~~RR~~vR~TWmp~~~~l~rle~e~gv~~RFvIG~-~~~g~~~~r~ie~E~~~~~DfllLd~h~ 86 (274)
T KOG2288|consen 8 RRKVLLVIGINTAFSSRKRRDSVRQTWMPSGEGLKRLEEEKGVIIRFVIGT-ATLGASLDRALEEENAQHGDFLLLDRHE 86 (274)
T ss_pred ccceEEEEEeecccchhhhHHHHHHhhcCCccchhhhccccceEEEEEecc-CCccHHHHHHHHHHHHhcCCeEeechhH
Confidence 778999999999999999999999999999999999999999999999999 5566899999999999999999997799
Q ss_pred CCCCCchHHHHHHHHHHHhCCCccEEEEEcCeeeecHHHHHHHHhhcCCCCceEEEEeecCcccccCCCccccCCccccC
Q 017892 191 EAPKEFPNKAKLFFAYAVDKWDAEYYAKVNDDVYVNIDSLGATLATHLDKPRVYIGCMKSGDVFSEPGHKWYEPDWWKFG 270 (364)
Q Consensus 191 Dsy~nLt~Kt~~~~~wa~~~~~a~f~lKvDDDvfVnl~~L~~~L~~~~~~~~lyiG~~~~~~v~r~~~~Kwy~p~~w~~y 270 (364)
|+|++|+.||+.+|.+|.++|+++||+|||||+|||++.|...|++++.++++|||||++|+|+.+|++|||||+ |+|+
T Consensus 87 E~Y~~Ls~Kt~~~f~~A~~~~daeFyvKvDDDv~v~l~~L~~~la~~r~~pr~YiGcmksg~v~~~~~~kw~Epe-Wkfg 165 (274)
T KOG2288|consen 87 EAYEELSAKTKAFFSAAVAHWDAEFYVKVDDDVYVRLARLGTLLARERSHPRLYIGCMKSGPVLTQPGGKWYEPE-WKFG 165 (274)
T ss_pred HHHHHHHHHHHHHHHHHHHhccceEEEEccccceecHHHHHHHHHhhccCCceEEEEecCCccccCCCCcccChh-hhcC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999 8998
Q ss_pred CCCCcCcCccCCeEeeCHHHHHHHHHhcccCCCCCcchHHHHHHHhcCCCeEecCCCcccCCC--CCCCcccceeeee
Q 017892 271 DKKLYFRHASGEMYVISRALAKFISINRSILRTYAHDDVSAGSWFLGLDVKYLNEGKFCCSSW--SSGLSSLSLSFTH 346 (364)
Q Consensus 271 ~~~~Yp~y~~G~gYvlS~dla~~I~~~~~~l~~~~~EDV~vG~~l~~l~V~~i~~~~f~~~~~--~~~~~C~~~sf~~ 346 (364)
+...|+||+.|++|+||++||.+|+.|+..++.|++|||++|.||.+|+|+|+||+++||+++ .++++|+ ++|++
T Consensus 166 ~~g~YfrhA~G~~YvlS~dLa~yi~in~~lL~~y~nEDVSlGaW~~gldV~h~dd~rlC~~~~~~~~~~~~~-~~~~~ 242 (274)
T KOG2288|consen 166 DNGNYFRHATGGGYVLSKDLATYISINRQLLHKYANEDVSLGAWMIGLDVEHVDDPRLCCSTPKALAGMVCA-ASFDW 242 (274)
T ss_pred cccccchhccCceEEeeHHHHHHHHHhHHHHHhhccCCcccceeeeeeeeeEecCCcccccchhhhccceee-eeecc
Confidence 843499999999999999999999999999999999999999999999999999999999998 7899999 59988
No 3
>PLN03133 beta-1,3-galactosyltransferase; Provisional
Probab=100.00 E-value=1.1e-48 Score=407.30 Aligned_cols=220 Identities=25% Similarity=0.420 Sum_probs=194.8
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHHHHhcCcchhhccccCCCeEEEEEeecCCCCCCcchhhhHHhhhhCCCeeeeCCCC
Q 017892 111 KKRPLVVIGILTRFGRKNNRDAIRKAWMGTGAALKKRENEKGIITRFVIGRSANRGDSLDQDIDSENKQTNDFFILDHHV 190 (364)
Q Consensus 111 ~~~~~llI~V~S~~~~~~rR~aIR~TW~~~~~~lk~Le~~~~i~v~FvvG~s~~~~~~~~~~I~~E~~~~~Dil~l~d~~ 190 (364)
.++++|||+|+|+|+|++||++||+|||+.... +..++.++|++|.+.+ +.++..|++|+++|+|||++ ||.
T Consensus 382 ~~~~~LlI~V~Sap~nf~rR~AIR~TWg~~~~~-----~~~~v~~rFvVG~s~n--~~l~~~L~~Ea~~ygDIIq~-dF~ 453 (636)
T PLN03133 382 KKPLDLFIGVFSTANNFKRRMAVRRTWMQYDAV-----RSGAVAVRFFVGLHKN--QMVNEELWNEARTYGDIQLM-PFV 453 (636)
T ss_pred CCceEEEEEEeCCcccHHHHHHHHHhhcccccc-----CCCceEEEEEEecCCc--HHHHHHHHHHHHHcCCeEEE-eee
Confidence 457899999999999999999999999986421 2456899999999875 46789999999999999997 699
Q ss_pred CCCCCchHHHHHHHHHHHhCCCccEEEEEcCeeeecHHHHHHHHhhcCCCCceEEEEeec-CcccccCCCccccCCcccc
Q 017892 191 EAPKEFPNKAKLFFAYAVDKWDAEYYAKVNDDVYVNIDSLGATLATHLDKPRVYIGCMKS-GDVFSEPGHKWYEPDWWKF 269 (364)
Q Consensus 191 Dsy~nLt~Kt~~~~~wa~~~~~a~f~lKvDDDvfVnl~~L~~~L~~~~~~~~lyiG~~~~-~~v~r~~~~Kwy~p~~w~~ 269 (364)
|+|+|||+||++++.|+..|++++|++|+|||+|||+++|+++|......+++|+|++.. ..|+|++.+|||+|. ..
T Consensus 454 DsY~NLTlKtl~~~~wa~~c~~akFilK~DDDvFVnv~~Ll~~L~~~~~~~~Ly~G~v~~~~~PiRd~~sKWYVs~--~e 531 (636)
T PLN03133 454 DYYSLITWKTLAICIFGTEVVSAKYVMKTDDDAFVRVDEVLASLKRTNVSHGLLYGLINSDSQPHRNPDSKWYISP--EE 531 (636)
T ss_pred chhhhhHHHHHHHHHHHHhCCCceEEEEcCCceEEcHHHHHHHHHhcCCCCceEEEEeccCCCcccCCCCCCCCCH--HH
Confidence 999999999999999999899999999999999999999999998877777899999874 579999999999997 35
Q ss_pred CCCCCcCcCccCCeEeeCHHHHHHHHHhc--ccCCCCCcchHHHHHHHh-----cCCCeEecCCCcccCCCCCCCccc
Q 017892 270 GDKKLYFRHASGEMYVISRALAKFISINR--SILRTYAHDDVSAGSWFL-----GLDVKYLNEGKFCCSSWSSGLSSL 340 (364)
Q Consensus 270 y~~~~Yp~y~~G~gYvlS~dla~~I~~~~--~~l~~~~~EDV~vG~~l~-----~l~V~~i~~~~f~~~~~~~~~~C~ 340 (364)
||++.|||||+|+|||||+++|++|+... ..++.|++||||+|+|+. ++.+.+.++.+||+..+..+.+++
T Consensus 532 yp~~~YPpYasG~gYVlS~Dla~~L~~~s~s~~l~~f~lEDVyvGi~l~~l~k~gl~v~~~~~~r~~~~~C~~~~i~~ 609 (636)
T PLN03133 532 WPEETYPPWAHGPGYVVSRDIAKEVYKRHKEGRLKMFKLEDVAMGIWIAEMKKEGLEVKYENDGRIYNEGCKDGYVVA 609 (636)
T ss_pred CCCCCCCCCCCcCEEEEcHHHHHHHHHhhhhcccCcCChhhHhHHHHHHHhcccCCCceeeCCCcccCCcCCCCeEEE
Confidence 78899999999999999999999998754 579999999999999985 566888999999987776554444
No 4
>KOG2287 consensus Galactosyltransferases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.6e-46 Score=371.88 Aligned_cols=224 Identities=22% Similarity=0.264 Sum_probs=199.0
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHHhcCcchhhccccCCCeEEEEEeecCCCCCCcchhhhHHhhhhCCCeeeeCCCCCC
Q 017892 113 RPLVVIGILTRFGRKNNRDAIRKAWMGTGAALKKRENEKGIITRFVIGRSANRGDSLDQDIDSENKQTNDFFILDHHVEA 192 (364)
Q Consensus 113 ~~~llI~V~S~~~~~~rR~aIR~TW~~~~~~lk~Le~~~~i~v~FvvG~s~~~~~~~~~~I~~E~~~~~Dil~l~d~~Ds 192 (364)
.++++++|.|++++++||++||+|||++... .+..++++|++|.+.+.+ .+++.+.+|++.|||||+. ||.|+
T Consensus 94 ~~~lLl~V~S~~~~farR~aiR~TW~~~~~v-----~~~~v~~~FLvG~~~~~~-~~~~~l~~Ea~~ygDIi~~-df~Dt 166 (349)
T KOG2287|consen 94 PPELLLLVKSAPDNFARRNAIRKTWGNENNV-----RGGRVRVLFLVGLPSNED-KLNKLLADEARLYGDIIQV-DFEDT 166 (349)
T ss_pred CceEEEEEecCCCCHHHHHHHHHHhcCcccc-----CCCcEEEEEEecCCCcHH-HHHHHHHHHHHHhCCEEEE-ecccc
Confidence 4899999999999999999999999998742 356789999999998643 5679999999999999997 79999
Q ss_pred CCCchHHHHHHHHHHHh-CCCccEEEEEcCeeeecHHHHHHHHhhc-CCCCceEEEEeec-CcccccCCCccccCCcccc
Q 017892 193 PKEFPNKAKLFFAYAVD-KWDAEYYAKVNDDVYVNIDSLGATLATH-LDKPRVYIGCMKS-GDVFSEPGHKWYEPDWWKF 269 (364)
Q Consensus 193 y~nLt~Kt~~~~~wa~~-~~~a~f~lKvDDDvfVnl~~L~~~L~~~-~~~~~lyiG~~~~-~~v~r~~~~Kwy~p~~w~~ 269 (364)
|.|||+||++++.|+.+ |++++|++|+|||+|||+++|+.+|..+ .+.+.+|+|.+.. .+|+|++.+|||+|+ .+
T Consensus 167 y~nltlKtl~~l~w~~~~cp~akfi~K~DDDvfv~~~~L~~~L~~~~~~~~~~~~G~v~~~~~p~R~~~~KwyVp~--~~ 244 (349)
T KOG2287|consen 167 YFNLTLKTLAILLWGVSKCPDAKFILKIDDDVFVNPDNLLEYLDKLNDPSSDLYYGRVIQNAPPIRDKTSKWYVPE--SE 244 (349)
T ss_pred hhchHHHHHHHHHHHHhcCCcceEEEeccCceEEcHHHHHHHHhccCCCCcceEEEeecccCCCCCCCCCCCccCH--HH
Confidence 99999999999999999 8999999999999999999999999999 7889999999764 589999999999998 57
Q ss_pred CCCCCcCcCccCCeEeeCHHHHHHHHHhcccCCCCCcchHHHHHHHhcC-CCeEecCCCcccCCCCCCCcccc-eeeee
Q 017892 270 GDKKLYFRHASGEMYVISRALAKFISINRSILRTYAHDDVSAGSWFLGL-DVKYLNEGKFCCSSWSSGLSSLS-LSFTH 346 (364)
Q Consensus 270 y~~~~Yp~y~~G~gYvlS~dla~~I~~~~~~l~~~~~EDV~vG~~l~~l-~V~~i~~~~f~~~~~~~~~~C~~-~sf~~ 346 (364)
|+.+.||+||+|+|||||+++|+.|+.++..++.++.|||++|+|+... +|.++++..+.... ..-+.|.. ..+++
T Consensus 245 y~~~~YP~Y~sG~gYvis~~~a~~l~~~s~~~~~~~iEDV~~g~~l~~~~gi~~~~~~~~~~~~-~~~~~~~~~~~~~~ 322 (349)
T KOG2287|consen 245 YPCSVYPPYASGPGYVISGDAARRLLKASKHLKFFPIEDVFVGGCLAEDLGIKPVNHPGFFEIP-LSFDPCCYRDLLAV 322 (349)
T ss_pred CCCCCCCCcCCCceeEecHHHHHHHHHHhcCCCccchHHHHHHHHHHHhcCCCcccCccccccc-ccCCCCcccceEEE
Confidence 8989999999999999999999999999999999999999999999877 99999988844332 33345554 33444
No 5
>PF01762 Galactosyl_T: Galactosyltransferase; InterPro: IPR002659 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 31 (GH31 from CAZY) comprises enzymes with a number of known activities; N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase (2.4.1.149 from EC); beta-1,3-galactosyltransferase (2.4.1 from EC); fucose-specific beta-1,3-N-acetylglucosaminyltransferase (2.4.1 from EC); globotriosylceramide beta-1,3-GalNAc transferase (2.4.1.79 from EC) [, ].; GO: 0008378 galactosyltransferase activity, 0006486 protein glycosylation, 0016020 membrane
Probab=100.00 E-value=1.1e-46 Score=343.41 Aligned_cols=191 Identities=27% Similarity=0.390 Sum_probs=171.0
Q ss_pred HHHHHHHHHHhcCcchhhccccCCCeEEEEEeecCCCCCCcchhhhHHhhhhCCCeeeeCCCCCCCCCchHHHHHHHHHH
Q 017892 128 NNRDAIRKAWMGTGAALKKRENEKGIITRFVIGRSANRGDSLDQDIDSENKQTNDFFILDHHVEAPKEFPNKAKLFFAYA 207 (364)
Q Consensus 128 ~rR~aIR~TW~~~~~~lk~Le~~~~i~v~FvvG~s~~~~~~~~~~I~~E~~~~~Dil~l~d~~Dsy~nLt~Kt~~~~~wa 207 (364)
+||++||+||++.... ...++.++||+|.+++.+..+++.|.+|+++|+|||++ ||.|+|.|||+||+++|+|+
T Consensus 1 ~rR~~IR~TW~~~~~~-----~~~~~~~~FvvG~~~~~~~~~~~~l~~E~~~y~Dil~~-d~~D~y~nlt~K~~~~~~w~ 74 (195)
T PF01762_consen 1 ERRQAIRETWGNQRNF-----KGVRVKVVFVVGESPNSDSDLQEALQEEAEKYGDILQG-DFVDSYRNLTLKTLAGLKWA 74 (195)
T ss_pred ChHHHHHHHHhccccc-----CCCcEEEEEEEecCCCCcHHHHHHhhhhhhhcCceEee-ecccccchhhHHHHHHHHHH
Confidence 5899999999998742 35789999999999854457788899999999999997 79999999999999999999
Q ss_pred Hh-CCCccEEEEEcCeeeecHHHHHHHHhhc--CC-CCceEEEEeecCcccccCCCccccCCccccCCCCCcCcCccCCe
Q 017892 208 VD-KWDAEYYAKVNDDVYVNIDSLGATLATH--LD-KPRVYIGCMKSGDVFSEPGHKWYEPDWWKFGDKKLYFRHASGEM 283 (364)
Q Consensus 208 ~~-~~~a~f~lKvDDDvfVnl~~L~~~L~~~--~~-~~~lyiG~~~~~~v~r~~~~Kwy~p~~w~~y~~~~Yp~y~~G~g 283 (364)
.+ |++++|++|+|||+|||+++|.+.|... .. ...+|.+++..++|+|++.+|||+|+ ..|+.+.|||||+|++
T Consensus 75 ~~~c~~~~~v~k~DDD~~vn~~~l~~~L~~~~~~~~~~~~~g~~~~~~~~~r~~~~kw~v~~--~~y~~~~yP~y~~G~~ 152 (195)
T PF01762_consen 75 SKHCPNAKYVLKVDDDVFVNPDRLVSFLKSLKQDPSKNSIYGGCIKNGPPIRDPSSKWYVSE--EEYPDDYYPPYCSGGG 152 (195)
T ss_pred HhhCCchhheeecCcEEEEehHHhhhhhhhcccCccccccccccccCCccccccccCceeee--eecccccCCCcCCCCe
Confidence 99 6679999999999999999999999988 33 34455555667789999999999998 3678889999999999
Q ss_pred EeeCHHHHHHHHHhcccCCCCCcchHHHHHHHhcCCCeEecCC
Q 017892 284 YVISRALAKFISINRSILRTYAHDDVSAGSWFLGLDVKYLNEG 326 (364)
Q Consensus 284 YvlS~dla~~I~~~~~~l~~~~~EDV~vG~~l~~l~V~~i~~~ 326 (364)
|+||+++|+.|+.++..++.+++|||++|+|+.++||+++|++
T Consensus 153 yvls~~~v~~i~~~~~~~~~~~~eDv~iGi~~~~~~i~~~~~~ 195 (195)
T PF01762_consen 153 YVLSSDVVKRIYKASSHTPFFPLEDVFIGILAEKLGIKPIHDP 195 (195)
T ss_pred EEecHHHHHHHHHHhhcCCCCCchHHHHHHHHHHCCCCccCCC
Confidence 9999999999999999999999999999999999999999875
No 6
>PTZ00210 UDP-GlcNAc-dependent glycosyltransferase; Provisional
Probab=99.97 E-value=2.7e-31 Score=260.68 Aligned_cols=190 Identities=18% Similarity=0.280 Sum_probs=156.7
Q ss_pred CCCceEEEEEeCCCCC--HHHHHHHHHHHhcCcchhhcccc-CCCeEEEEEeecCCCCCCcchhhhHHhhhhCCCeeeeC
Q 017892 111 KKRPLVVIGILTRFGR--KNNRDAIRKAWMGTGAALKKREN-EKGIITRFVIGRSANRGDSLDQDIDSENKQTNDFFILD 187 (364)
Q Consensus 111 ~~~~~llI~V~S~~~~--~~rR~aIR~TW~~~~~~lk~Le~-~~~i~v~FvvG~s~~~~~~~~~~I~~E~~~~~Dil~l~ 187 (364)
+++.++++||.|..++ +.||++.|+||++......+-++ ...+.++|++|+.++.+-..+.++.+|+++|+|||++
T Consensus 77 ~~~~lv~~Gi~S~d~~~r~~rR~lqr~t~w~y~~va~~~n~ftg~~lv~y~l~~H~~~~~~~~~~L~eEA~~~~DIVil- 155 (382)
T PTZ00210 77 AQRFLAVLGIPSVDNSERSRRRDLQRQTCWKYSGVATRSNNFSGSLLPLYLLAPHQSNSYLISHSLKEEAARTHDIITL- 155 (382)
T ss_pred cCCceEEEeccCCCchHHHHHHHHHHhhhhcchhhhhhccCCchhhhhhhhhccCCccchhhhHHHHHHHHHhCCEEEE-
Confidence 5678999999999988 88999999999997754222222 2345678999999987668999999999999999998
Q ss_pred CC------------------CCCCCCchHHHHHHHHHHHh-CCCccEEEEEcCeeeecHHHHHHHHhhcCCCCceEEEEe
Q 017892 188 HH------------------VEAPKEFPNKAKLFFAYAVD-KWDAEYYAKVNDDVYVNIDSLGATLATHLDKPRVYIGCM 248 (364)
Q Consensus 188 d~------------------~Dsy~nLt~Kt~~~~~wa~~-~~~a~f~lKvDDDvfVnl~~L~~~L~~~~~~~~lyiG~~ 248 (364)
+| .|++.++|+||+++++|+.. |++++|++|.|||+|||++++++.|+.. ++..+|+|.+
T Consensus 156 pf~d~~~tTnKkiG~~g~WG~e~e~~mT~KT~l~~~wA~~~cP~a~YImKgDDDvFVrVp~lL~~Lr~~-prr~LY~G~v 234 (382)
T PTZ00210 156 PTNDVSPSTRKKIGENGNWGIEAEVAMSRKTYLWLRFALHMFPNVSYIVKGDDDIFIRVPKYLADLRVM-PRHGLYMGRY 234 (382)
T ss_pred ecccCccccccccccCCcccchhhcchhHHHHHHHHHHHHhCCCCCeEEEcCCCeEeeHHHHHHHHhhC-CCCceEEEee
Confidence 59 67778899999999999999 7899999999999999999999999664 5667999987
Q ss_pred ecC-cccccCCCccccCCccccCCCCCcCcCccCCeEeeCHHHHHHHHHhccc--C---------------CCCCcchHH
Q 017892 249 KSG-DVFSEPGHKWYEPDWWKFGDKKLYFRHASGEMYVISRALAKFISINRSI--L---------------RTYAHDDVS 310 (364)
Q Consensus 249 ~~~-~v~r~~~~Kwy~p~~w~~y~~~~Yp~y~~G~gYvlS~dla~~I~~~~~~--l---------------~~~~~EDV~ 310 (364)
... .|.|+ .+||||+|++|+||+|+|+.|+...+. + -.+.+||+.
T Consensus 235 ~~~~~p~Rd-----------------~~PpY~~G~gYvLSrDVA~~Lvs~~pl~rL~~~pys~~~~~~y~~~~~~~EDiM 297 (382)
T PTZ00210 235 NYYNRIWRR-----------------NQLTYVNGYCITLSRDTAQAIISYKPLERLVNMPFSMWDYFDFLDLGMFYEDVM 297 (382)
T ss_pred CCCCccccC-----------------CCCCccccceeeccHHHHHHHHhhChHhHhhcCCCchHHHHHHHHhhcCchHHH
Confidence 532 23322 369999999999999999999876432 2 235799999
Q ss_pred HHHHH-hcCC
Q 017892 311 AGSWF-LGLD 319 (364)
Q Consensus 311 vG~~l-~~l~ 319 (364)
+|.|+ .++.
T Consensus 298 vG~vLr~~~k 307 (382)
T PTZ00210 298 VGMILREKVV 307 (382)
T ss_pred HHHHHHHhcC
Confidence 99999 4543
No 7
>PF02434 Fringe: Fringe-like; InterPro: IPR003378 The Notch receptor is a large, cell surface transmembrane protein involved in a wide variety of developmental processes in higher organisms []. It becomes activated when its extracellular region binds to ligands located on adjacent cells. Much of this extracellular region is composed of EGF-like repeats, many of which can be O-fucosylated. A number of these O-fucosylated repeats can in turn be further modified by the action of a beta-1,3-N-acetylglucosaminyltransferase enzyme known as Fringe []. Fringe potentiates the activation of Notch by Delta ligands, while inhibiting activation by Serrate/Jagged ligands. This regulation of Notch signalling by Fringe is important in many processes []. Four distinct Fringe proteins have so far been studied in detail; Drosophila Fringe (Dfng) and its three mammalian homologues Lunatic Fringe (Lfng), Radical Fringe (Rfng) and Manic Fringe (Mfng). Dfng, Lfng and Rfng have all been shown to play important roles in developmental processes within their host, though the phenotype of mutants can vary between species e.g. Rfng mutants are retarded in wing development in chickens, but have no obvious phenotype in mice [, , ]. Mfng mutants have not, so far, been charcterised. Biochemical studies indicate that the Fringe proteins are fucose-specific transferases requiring manganese for activity and utilising UDP-N-acetylglucosamine as a donor substrate []. The three mammalian proteins show distinct variations in their catalytic efficiencies with different substrates. Dfng is a glucosaminyltransferase that controls the response of the Notch receptor to specific ligands which is localised to the Golgi apparatus [] (not secreted as previously thought). Modification of Notch occurs through glycosylation by Dfng. This entry consists of Fringe proteins and related glycosyltransferase enzymes including: Beta-1,3-glucosyltransferase, which glucosylates O-linked fucosylglycan on thrombospondin type 1 repeat domains []. Core 1 beta1,3-galactosyltransferase 1, generates the core T antigen, which is a precursor for many extended O-glycans in glycoproteins and plays a central role in many processes, such as angiogenesis, thrombopoiesis and kidney homeostasis development []. ; GO: 0016757 transferase activity, transferring glycosyl groups, 0016020 membrane; PDB: 2J0B_A 2J0A_A.
Probab=99.81 E-value=9e-20 Score=173.54 Aligned_cols=195 Identities=21% Similarity=0.258 Sum_probs=102.6
Q ss_pred ceEEEEEeCCCCCHH-HHHHHHHHHhcCcchhhccccCCCeEEEEEeecCCCCCCcchhhhHHhhhhCCCeeeeCCCCCC
Q 017892 114 PLVVIGILTRFGRKN-NRDAIRKAWMGTGAALKKRENEKGIITRFVIGRSANRGDSLDQDIDSENKQTNDFFILDHHVEA 192 (364)
Q Consensus 114 ~~llI~V~S~~~~~~-rR~aIR~TW~~~~~~lk~Le~~~~i~v~FvvG~s~~~~~~~~~~I~~E~~~~~Dil~l~d~~Ds 192 (364)
-+++|+|+|++++++ |-.+|++||++.... . .|+.... .+..+..+ ...++ ..++...+
T Consensus 6 ~dI~i~V~T~~k~h~tR~~~I~~TW~~~~~~---------~--~~ifsd~------~d~~l~~~--~~~~l-~~~~~~~~ 65 (252)
T PF02434_consen 6 DDIFIAVKTTKKFHKTRAPAIKQTWAKRCNK---------Q--TFIFSDA------EDPSLPTV--TGVHL-VNPNCDAG 65 (252)
T ss_dssp GGEEEEEE--GGGTTTTHHHHHHTGGGGSGG---------G--EEEEESS--------HHHHHH--HGGGE-EE------
T ss_pred ccEEEEEEeCHHHHHHHHHHHHHHHHhhcCC---------c--eEEecCc------cccccccc--ccccc-ccCCCcch
Confidence 478999999998655 669999999999852 1 2432221 13445544 12233 34666666
Q ss_pred CCCchHHHHHHHHHHHh-CCCccEEEEEcCeeeecHHHHHHHHhhcCCCCceEEEEeecCcccccCCCccccCCccccCC
Q 017892 193 PKEFPNKAKLFFAYAVD-KWDAEYYAKVNDDVYVNIDSLGATLATHLDKPRVYIGCMKSGDVFSEPGHKWYEPDWWKFGD 271 (364)
Q Consensus 193 y~nLt~Kt~~~~~wa~~-~~~a~f~lKvDDDvfVnl~~L~~~L~~~~~~~~lyiG~~~~~~v~r~~~~Kwy~p~~w~~y~ 271 (364)
+....++.++.+.+... ..+++|++++|||+||++++|..+|...++..++|+|+.....+.... .+ ..+. ..
T Consensus 66 ~~~~~~~~~~~~~y~~~~~~~~~Wf~~~DDDtyv~~~~L~~~L~~~~~~~~~yiG~~~~~~~~~~~-~~-~~~~----~~ 139 (252)
T PF02434_consen 66 HCRKTLSCKMAYEYDHFLNSDKDWFCFADDDTYVNVENLRRLLSKYDPSEPIYIGRPSGDRPIEII-HR-FNPN----KS 139 (252)
T ss_dssp -------HHHHHHHHHHHHHT-SEEEEEETTEEE-HHHHHHHHTTS-TTS--EEE-EE----------------------
T ss_pred hhHHHHHHHHHHHHHhhhcCCceEEEEEeCCceecHHHHHHHHhhCCCccCEEeeeeccCccceee-cc-cccc----cc
Confidence 55555666655555333 367899999999999999999999999999999999997543332110 00 0000 01
Q ss_pred CCCcCcCc-cCCeEeeCHHHHHHHHHh---cccCCCC----CcchHHHHHHHhc-CCCeEecCCCcccCCCC
Q 017892 272 KKLYFRHA-SGEMYVISRALAKFISIN---RSILRTY----AHDDVSAGSWFLG-LDVKYLNEGKFCCSSWS 334 (364)
Q Consensus 272 ~~~Yp~y~-~G~gYvlS~dla~~I~~~---~~~l~~~----~~EDV~vG~~l~~-l~V~~i~~~~f~~~~~~ 334 (364)
...-..|+ +|+||+||+.++++|... ....... ..||+.+|.|+.. |||+.++.+.||.+.+.
T Consensus 140 ~~~~~~f~~GGaG~vlSr~~~~k~~~~~~~~~~~~~~~~~~~~dD~~lG~ci~~~lgv~lt~s~~fhs~~~~ 211 (252)
T PF02434_consen 140 KDSGFWFATGGAGYVLSRALLKKMSPWASGCKCPSTDEKIRLPDDMTLGYCIENLLGVPLTHSPLFHSHLEN 211 (252)
T ss_dssp ------EE-GGG-EEEEHHHHHHHHHHHTT-TTS--TTTTTS-HHHHHHHHHHHTT---EEE-TT---SSS-
T ss_pred CcCceEeeCCCeeHHHhHHHHHHHhhhcccccccCCcCCCCCcccChhhhhHHhcCCcceeechhhcccCcc
Confidence 12233455 458999999999999532 2222222 3899999999988 99999999999998875
No 8
>PF13334 DUF4094: Domain of unknown function (DUF4094)
Probab=99.79 E-value=5.6e-20 Score=150.08 Aligned_cols=77 Identities=26% Similarity=0.319 Sum_probs=56.7
Q ss_pred hhhHHHHHHHHHHHHHHHHhccccccchhhHHHH-------HHhhhh-ccCCccc----------ccccCchhhhhhhHH
Q 017892 17 TRISSLLLSMFATFASIYVAGRLWQDAQTRVRLI-------KELDRI-TGYGKSA----------ISVDDTLKIIACREQ 78 (364)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~-~~~~~~~----------~~~~~~~~~~~~~~~ 78 (364)
|++|+++|||+|||||+|||||||..||..+... +++... ++|+++. .+|.+|++ ++++|
T Consensus 1 S~kw~l~Lc~~SF~~G~lft~R~W~~pe~~~~~~~~~~~~~~~l~l~s~~c~~k~~~~~~~~di~~eV~kTh~--aIq~L 78 (95)
T PF13334_consen 1 SRKWVLLLCIASFCAGMLFTNRMWTVPESKEISRRSSQDAEERLQLVSEDCDPKKLKESDQRDIMGEVSKTHE--AIQSL 78 (95)
T ss_pred CchHHHHHHHHHHHHHHHHhcccccCCccccchhhhccccccccccccccccccccccCCccchhHHHHHHHH--HHHHH
Confidence 6899999999999999999999998887655432 122212 3443322 24555555 45799
Q ss_pred HHHHHHHhhhhhhhccc
Q 017892 79 RKKLLELEMQLAAAGQE 95 (364)
Q Consensus 79 ~~~~~~~~~~l~~a~~~ 95 (364)
||+|++||||||+||++
T Consensus 79 dKtIS~LEMELAaARa~ 95 (95)
T PF13334_consen 79 DKTISSLEMELAAARAE 95 (95)
T ss_pred HHHHHHHHHHHHHHhcC
Confidence 99999999999999963
No 9
>KOG2246 consensus Galactosyltransferases [Carbohydrate transport and metabolism]
Probab=99.59 E-value=8.7e-15 Score=145.96 Aligned_cols=173 Identities=20% Similarity=0.300 Sum_probs=130.3
Q ss_pred CCCCCceEEEEEeCCCCCHH-HHHHHHHHHhcCcchhhccccCCCeEEEEEeecCCCCCCcchhhhHHhhhhCCCeeeeC
Q 017892 109 DPKKRPLVVIGILTRFGRKN-NRDAIRKAWMGTGAALKKRENEKGIITRFVIGRSANRGDSLDQDIDSENKQTNDFFILD 187 (364)
Q Consensus 109 ~~~~~~~llI~V~S~~~~~~-rR~aIR~TW~~~~~~lk~Le~~~~i~v~FvvG~s~~~~~~~~~~I~~E~~~~~Dil~l~ 187 (364)
--.++..|++.|+|++.+.. |-+.+-+||++.++. ..|+--. +.++...+.-+ .+
T Consensus 86 ~l~r~~~v~cwv~t~~~~~~~~~~~v~~TW~~rc~~-----------~~f~s~~-----------~s~~~~~f~~v-~~- 141 (364)
T KOG2246|consen 86 WLSRSGRVLCWVLTSPMRHVTRADAVKETWLKRCDK-----------GIFFSPT-----------LSKDDSRFPTV-YY- 141 (364)
T ss_pred ccCCCceEEEEEEecCcCceeehhhhhcccccccCc-----------ceecCcc-----------CCCCCCcCcee-ec-
Confidence 34567899999999998766 557999999999853 2344311 11111123333 34
Q ss_pred CCCCCCCCchHHHHHHHHHHHh--CCCccEEEEEcCeeeecHHHHHHHHhhcCCCCceEEEEeecCcccccCCCccccCC
Q 017892 188 HHVEAPKEFPNKAKLFFAYAVD--KWDAEYYAKVNDDVYVNIDSLGATLATHLDKPRVYIGCMKSGDVFSEPGHKWYEPD 265 (364)
Q Consensus 188 d~~Dsy~nLt~Kt~~~~~wa~~--~~~a~f~lKvDDDvfVnl~~L~~~L~~~~~~~~lyiG~~~~~~v~r~~~~Kwy~p~ 265 (364)
+..|+|+++..||...|+++.+ ..+++|++|+|||||+.+++|..+|..++|.+++|+|+.... |
T Consensus 142 ~~~~g~~~~~~ktr~~~~yv~~~~~~~~dWf~~aDDDTy~i~eNLr~~L~~yDp~~p~YiG~~~~~----------~--- 208 (364)
T KOG2246|consen 142 NLPDGYRSLWRKTRIAFKYVYDHILKDYDWFLKADDDTYFIMENLRYVLSKYDPEKPVYLGYRSKS----------Y--- 208 (364)
T ss_pred cCCcchHHHHHHHHHHHHHHHHhccCCCCeEEeccCCeEEeHHHHHHHHhhcCCCCcEEecccccc----------c---
Confidence 5889999999999999999986 368999999999999999999999999999999999985320 0
Q ss_pred ccccCCCCCcCcCccCCeEeeCHHHHHHHHH----hc-ccCCCCC--cchHHHHHHHhcCCCeEecC
Q 017892 266 WWKFGDKKLYFRHASGEMYVISRALAKFISI----NR-SILRTYA--HDDVSAGSWFLGLDVKYLNE 325 (364)
Q Consensus 266 ~w~~y~~~~Yp~y~~G~gYvlS~dla~~I~~----~~-~~l~~~~--~EDV~vG~~l~~l~V~~i~~ 325 (364)
-.+.|- .+|++|++|+++...++. +. .+...+. .||+-+|.|+..+||...|.
T Consensus 209 -----~~~~y~--~g~ag~~ls~aa~~~la~~l~~~~~~C~~~~~~~~eD~~i~~Cl~~~GV~~~d~ 268 (364)
T KOG2246|consen 209 -----FQNGYS--SGGAGYVLSFAALRRLAERLLNNEDKCPQRYPSYGEDRRIGRCLAEVGVPATDE 268 (364)
T ss_pred -----cccccc--cCCCCcceeHHHHHHHHHHHhcchhhcccccCCchhHHHHHHHHHHhCCCccCc
Confidence 112211 367899999998887664 22 2444554 89999999999999999876
No 10
>PLN03153 hypothetical protein; Provisional
Probab=99.29 E-value=1.1e-10 Score=119.80 Aligned_cols=190 Identities=19% Similarity=0.200 Sum_probs=118.9
Q ss_pred CCCceEEEEEeCCCCCH-HHHHHHHHHHhcCcchhhccccCCCeEEEEEeecCCCCCCcchhhhHHhhhhCCCeeeeCCC
Q 017892 111 KKRPLVVIGILTRFGRK-NNRDAIRKAWMGTGAALKKRENEKGIITRFVIGRSANRGDSLDQDIDSENKQTNDFFILDHH 189 (364)
Q Consensus 111 ~~~~~llI~V~S~~~~~-~rR~aIR~TW~~~~~~lk~Le~~~~i~v~FvvG~s~~~~~~~~~~I~~E~~~~~Dil~l~d~ 189 (364)
..--.++++|.++.+.. +|+..|+.+|.+... +| ++|+.....+. ..+..+... ..-.|.=.++
T Consensus 119 t~~~hIvF~I~~s~~~w~~R~~yik~wW~p~~~--------rg--~v~ld~~~~~~--~~~~~~P~i-~is~d~s~f~-- 183 (537)
T PLN03153 119 LSLNHIMFGIAGSSQLWKRRKELVRLWWRPNQM--------RG--HVWLEEQVSPE--EGDDSLPPI-MVSEDTSRFR-- 183 (537)
T ss_pred CccccEEEEEEEchhhhhhhhhhhhhhcCcccc--------ee--EEEecccCCCC--CCcCCCCCE-EeCCCccccc--
Confidence 33457899999888766 566999999998642 11 33443322210 011111100 0000110000
Q ss_pred CCCCCCchHHHHH--HHHHHHh--CCCccEEEEEcCeeeecHHHHHHHHhhcCCCCceEEEEeecCcccccCCCccccCC
Q 017892 190 VEAPKEFPNKAKL--FFAYAVD--KWDAEYYAKVNDDVYVNIDSLGATLATHLDKPRVYIGCMKSGDVFSEPGHKWYEPD 265 (364)
Q Consensus 190 ~Dsy~nLt~Kt~~--~~~wa~~--~~~a~f~lKvDDDvfVnl~~L~~~L~~~~~~~~lyiG~~~~~~v~r~~~~Kwy~p~ 265 (364)
-++..+......+ +...+.. .++++||+++|||+|+.+++|+.+|..+++.++.|+|......
T Consensus 184 y~~~~Gh~sa~rI~rmv~et~~~~~pd~kWfVf~DDDTyf~~~NLv~~Ls~YDptkp~YIGs~Se~~------------- 250 (537)
T PLN03153 184 YTNPTGHPSGLRISRIVLESFRLGLPDVRWFVLGDDDTIFNADNLVAVLSKYDPSEMVYVGGPSESH------------- 250 (537)
T ss_pred ccCCCCcHHHHHHHHHHHHHHHhhCCCCCEEEEecCCccccHHHHHHHHhhcCCCCCEEeccccccc-------------
Confidence 0112233332211 3333333 5899999999999999999999999999999999999753210
Q ss_pred ccccCCCCCcC--cCc-cCCeEeeCHHHHHHHHHhc-ccCCCC---CcchHHHHHHHhcCCCeEecCCCcccCCC
Q 017892 266 WWKFGDKKLYF--RHA-SGEMYVISRALAKFISINR-SILRTY---AHDDVSAGSWFLGLDVKYLNEGKFCCSSW 333 (364)
Q Consensus 266 ~w~~y~~~~Yp--~y~-~G~gYvlS~dla~~I~~~~-~~l~~~---~~EDV~vG~~l~~l~V~~i~~~~f~~~~~ 333 (364)
+.+.++ -|+ +|+||+||+.+++.|.... .+...| .-+|.-+|.|+..+||...++++|+....
T Consensus 251 -----~qn~~f~~~fA~GGAG~~LSrPLae~L~~~~d~C~~rY~~~~~gD~rL~~CL~elGV~LT~~~gfhQ~D~ 320 (537)
T PLN03153 251 -----SANSYFSHNMAFGGGGIAISYPLAEALSRILDDCLDRYPKLYGSDDRLHACITELGVPLSREPGFHQWDI 320 (537)
T ss_pred -----ccccccccccccCCceEEEcHHHHHHHHHHhhhhhhhcccCCCcHHHHHHHHHHcCCCceecCCcccccc
Confidence 001111 234 6799999999999988642 233333 35888899999999999999999998865
No 11
>KOG3708 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.91 E-value=0.0062 Score=63.00 Aligned_cols=150 Identities=16% Similarity=0.137 Sum_probs=97.8
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHHhcCcchhhccccCCCeEEEEEeecCCCCCCcchhhhHHhhhhCCCeeeeCCCCCCC
Q 017892 114 PLVVIGILTRFGRKNNRDAIRKAWMGTGAALKKRENEKGIITRFVIGRSANRGDSLDQDIDSENKQTNDFFILDHHVEAP 193 (364)
Q Consensus 114 ~~llI~V~S~~~~~~rR~aIR~TW~~~~~~lk~Le~~~~i~v~FvvG~s~~~~~~~~~~I~~E~~~~~Dil~l~d~~Dsy 193 (364)
-+|+++|+|. ..---+|-.|=+..-. ++.|+++.+.-. +|.-++ +.+..|
T Consensus 26 Erl~~aVmte---~tlA~a~NrT~ahhvp-----------rv~~F~~~~~i~---------------~~~a~~-~~vs~~ 75 (681)
T KOG3708|consen 26 ERLMAAVMTE---STLALAINRTLAHHVP-----------RVHLFADSSRID---------------NDLAQL-TNVSPY 75 (681)
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHhhcc-----------eeEEeecccccc---------------ccHhhc-cccCcc
Confidence 3566777772 2455666667665442 356777665421 111122 233334
Q ss_pred CCchHHH-HHHHHHHHh--CCCccEEEEEcCeeeecHHHHHHHHhhcCCCCceEEEEeecCcccccCCCccccCCccccC
Q 017892 194 KEFPNKA-KLFFAYAVD--KWDAEYYAKVNDDVYVNIDSLGATLATHLDKPRVYIGCMKSGDVFSEPGHKWYEPDWWKFG 270 (364)
Q Consensus 194 ~nLt~Kt-~~~~~wa~~--~~~a~f~lKvDDDvfVnl~~L~~~L~~~~~~~~lyiG~~~~~~v~r~~~~Kwy~p~~w~~y 270 (364)
..-..|+ .+.++++.+ +.++||++-+-|++|||...|+.++....-..++|+|.-. .
T Consensus 76 d~r~~~~~s~vl~~l~~~~~~~YDwFll~~D~tYv~a~~L~~l~~hmsin~dlymGEe~------------------~-- 135 (681)
T KOG3708|consen 76 DLRGQKTHSMVLGLLFNMVHNNYDWFLLAKDSTYVNAFVLLRLIDHMSINEDLYMGEEA------------------E-- 135 (681)
T ss_pred ccCccccHHHHHHHHHHhhccccceEEEecCcceecHHHHHHHHhhcccccccccchhh------------------h--
Confidence 4444554 345666666 4589999999999999999999999998888899998210 0
Q ss_pred CCCCcCcCcc-CCeEeeCHHHHHHHHHhcc-cCCC--CCcchHHHHHHHh
Q 017892 271 DKKLYFRHAS-GEMYVISRALAKFISINRS-ILRT--YAHDDVSAGSWFL 316 (364)
Q Consensus 271 ~~~~Yp~y~~-G~gYvlS~dla~~I~~~~~-~l~~--~~~EDV~vG~~l~ 316 (364)
++.. + |. |.||+||+.++..+-.|-. +... -.-+|+.+|.|++
T Consensus 136 ~gs~--r-C~l~~G~LLS~s~l~~lrnnle~C~~~~lsad~d~~lgrCi~ 182 (681)
T KOG3708|consen 136 DGSG--R-CRLDTGMLLSQSLLHALRNNLEGCRNDILSADPDEWLGRCIQ 182 (681)
T ss_pred CccC--c-cccccceeecHHHHHHHHhhHHHhhcccccCCcHHHHHHHHH
Confidence 1111 1 75 5799999999999987643 2222 2467899999995
No 12
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=95.64 E-value=0.34 Score=43.86 Aligned_cols=118 Identities=13% Similarity=0.086 Sum_probs=58.6
Q ss_pred HHHHHHhCCCccEEEEEcCeeeecHHHHHHHHhhc-CCCCceEEEEeecC--cccccCCCccccCCcc-ccCC-CCCcC-
Q 017892 203 FFAYAVDKWDAEYYAKVNDDVYVNIDSLGATLATH-LDKPRVYIGCMKSG--DVFSEPGHKWYEPDWW-KFGD-KKLYF- 276 (364)
Q Consensus 203 ~~~wa~~~~~a~f~lKvDDDvfVnl~~L~~~L~~~-~~~~~lyiG~~~~~--~v~r~~~~Kwy~p~~w-~~y~-~~~Yp- 276 (364)
.+.++.+..+.+|++.+|||+.+.++.|..++... .+.-.+..|.+... ...-.....++...+. .+.. ...+.
T Consensus 77 a~n~~~~~~~~d~i~~lD~D~~~~p~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (228)
T PF13641_consen 77 ALNEALAAARGDYILFLDDDTVLDPDWLERLLAAFADPGVGAVGGPVFPDNDRNWLTRLQDLFFARWHLRFRSGRRALGV 156 (228)
T ss_dssp HHHHHHHH---SEEEEE-SSEEE-CHHHHHHHHHHHBSS--EEEEEEEETTCCCEEEE-TT--S-EETTTS-TT-B----
T ss_pred HHHHHHHhcCCCEEEEECCCcEECHHHHHHHHHHHHhCCCCeEeeeEeecCCCCHHHHHHHHHHhhhhhhhhhhhcccce
Confidence 45666665679999999999999999998888876 34434444443211 1000000111000000 0111 11111
Q ss_pred cCccCCeEeeCHHHHHHHHHhcccCCCCCcchHHHHHHHhcCCCeEe
Q 017892 277 RHASGEMYVISRALAKFISINRSILRTYAHDDVSAGSWFLGLDVKYL 323 (364)
Q Consensus 277 ~y~~G~gYvlS~dla~~I~~~~~~l~~~~~EDV~vG~~l~~l~V~~i 323 (364)
.++.|++.++.++++..+---.. ....||..++.-+...|.+.+
T Consensus 157 ~~~~G~~~~~rr~~~~~~g~fd~---~~~~eD~~l~~r~~~~G~~~~ 200 (228)
T PF13641_consen 157 AFLSGSGMLFRRSALEEVGGFDP---FILGEDFDLCLRLRAAGWRIV 200 (228)
T ss_dssp S-B--TEEEEEHHHHHHH-S--S---SSSSHHHHHHHHHHHTT--EE
T ss_pred eeccCcEEEEEHHHHHHhCCCCC---CCcccHHHHHHHHHHCCCcEE
Confidence 34579999999999998853222 444699999988876654443
No 13
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=95.34 E-value=0.41 Score=47.92 Aligned_cols=158 Identities=15% Similarity=0.093 Sum_probs=84.1
Q ss_pred eEEEEEeecCCCCCCcchhhhHHhhhhCCC--eeeeCCCCCCCCCchHHHHHHHHHHHhCCCccEEEEEcCeeeecHHHH
Q 017892 153 IITRFVIGRSANRGDSLDQDIDSENKQTND--FFILDHHVEAPKEFPNKAKLFFAYAVDKWDAEYYAKVNDDVYVNIDSL 230 (364)
Q Consensus 153 i~v~FvvG~s~~~~~~~~~~I~~E~~~~~D--il~l~d~~Dsy~nLt~Kt~~~~~wa~~~~~a~f~lKvDDDvfVnl~~L 230 (364)
+.++++...+.+ ...+.+++=.++|.+ +..+. ...-.....|.-...+ +.+..+.+|++..|+|+.+.++.|
T Consensus 71 ~EIivvdd~s~D---~t~~iv~~~~~~~p~~~i~~v~--~~~~~G~~~K~~~l~~-~~~~a~ge~i~~~DaD~~~~p~~L 144 (373)
T TIGR03472 71 FQMLFGVQDPDD---PALAVVRRLRADFPDADIDLVI--DARRHGPNRKVSNLIN-MLPHARHDILVIADSDISVGPDYL 144 (373)
T ss_pred eEEEEEeCCCCC---cHHHHHHHHHHhCCCCceEEEE--CCCCCCCChHHHHHHH-HHHhccCCEEEEECCCCCcChhHH
Confidence 667776655432 222223222345555 32221 1111233456655544 345567899999999999999999
Q ss_pred HHHHhhcCCCCce-EEEEeecCcccccCCCcccc----C-CccccCCC------CCcCcCccCCeEeeCHHHHHHHHHhc
Q 017892 231 GATLATHLDKPRV-YIGCMKSGDVFSEPGHKWYE----P-DWWKFGDK------KLYFRHASGEMYVISRALAKFISINR 298 (364)
Q Consensus 231 ~~~L~~~~~~~~l-yiG~~~~~~v~r~~~~Kwy~----p-~~w~~y~~------~~Yp~y~~G~gYvlS~dla~~I~~~~ 298 (364)
...+.... .+++ .+++.....+ ...|.. . ..+.+++. ..-+.++.|+.+++.+++...+---.
T Consensus 145 ~~lv~~~~-~~~v~~V~~~~~~~~----~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~a~RR~~l~~iGGf~ 219 (373)
T TIGR03472 145 RQVVAPLA-DPDVGLVTCLYRGRP----VPGFWSRLGAMGINHNFLPSVMVARALGRARFCFGATMALRRATLEAIGGLA 219 (373)
T ss_pred HHHHHHhc-CCCcceEeccccCCC----CCCHHHHHHHHHhhhhhhHHHHHHHhccCCccccChhhheeHHHHHHcCChH
Confidence 88887764 2222 2222211111 111110 0 00011110 01234588999999999999875322
Q ss_pred ccCCCCCcchHHHHHHHhcCCCeE
Q 017892 299 SILRTYAHDDVSAGSWFLGLDVKY 322 (364)
Q Consensus 299 ~~l~~~~~EDV~vG~~l~~l~V~~ 322 (364)
. ....-.||+.+|.-+...|.+.
T Consensus 220 ~-~~~~~~ED~~l~~~i~~~G~~v 242 (373)
T TIGR03472 220 A-LAHHLADDYWLGELVRALGLRV 242 (373)
T ss_pred H-hcccchHHHHHHHHHHHcCCeE
Confidence 1 1223369999998887666444
No 14
>PF01755 Glyco_transf_25: Glycosyltransferase family 25 (LPS biosynthesis protein); InterPro: IPR002654 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 25 GT25 from CAZY comprises enzymes with only one known activity; as a lipopolysaccharide biosynthesis protein. These enzymes catalyse the transfer of various sugars onto the growing lipopolysaccharide chain during its biosynthesis [].; GO: 0009103 lipopolysaccharide biosynthetic process
Probab=95.28 E-value=0.37 Score=43.49 Aligned_cols=93 Identities=16% Similarity=0.122 Sum_probs=53.9
Q ss_pred EEeCCCCCHHHHHHHHHHHhcCcchhhccccCCCeEEEEEeecCCCCCCcchhhhHHhhhhCCCeeeeC----CCCCCCC
Q 017892 119 GILTRFGRKNNRDAIRKAWMGTGAALKKRENEKGIITRFVIGRSANRGDSLDQDIDSENKQTNDFFILD----HHVEAPK 194 (364)
Q Consensus 119 ~V~S~~~~~~rR~aIR~TW~~~~~~lk~Le~~~~i~v~FvvG~s~~~~~~~~~~I~~E~~~~~Dil~l~----d~~Dsy~ 194 (364)
-|.|-+.+.+||+.+.+..... ++.+.|+-|..... ++. ......++.-.... ...-+--
T Consensus 5 ~vInL~~~~~Rr~~~~~~~~~~-----------~~~~e~~~Avdg~~---l~~--~~~~~~~~~~~~~~~~~~~lt~gEi 68 (200)
T PF01755_consen 5 YVINLDRSTERRERIQQQLAKL-----------GINFEFFDAVDGRD---LSE--DELFRRYDPELFKKRYGRPLTPGEI 68 (200)
T ss_pred EEEECCCCHHHHHHHHHHHHHc-----------CCceEEEEeecccc---cch--HHHHHHhhhhhhhccccccCCcceE
Confidence 4566788889999998876644 35567776665431 111 11111121111110 0111111
Q ss_pred CchHHHHHHHHHHHhCCCccEEEEEcCeeeecHH
Q 017892 195 EFPNKAKLFFAYAVDKWDAEYYAKVNDDVYVNID 228 (364)
Q Consensus 195 nLt~Kt~~~~~wa~~~~~a~f~lKvDDDvfVnl~ 228 (364)
.=.+-.+..++-+++ .+.+|.+-.-||+.++.+
T Consensus 69 GC~lSH~~~w~~~v~-~~~~~~lIlEDDv~~~~~ 101 (200)
T PF01755_consen 69 GCALSHIKAWQRIVD-SGLEYALILEDDVIFDPD 101 (200)
T ss_pred eehhhHHHHHHHHHH-cCCCeEEEEecccccccc
Confidence 226667778888877 357999999999999965
No 15
>PF13506 Glyco_transf_21: Glycosyl transferase family 21
Probab=94.57 E-value=0.048 Score=49.12 Aligned_cols=129 Identities=16% Similarity=0.050 Sum_probs=78.4
Q ss_pred CchHHHHHHHHHHHhCCCccEEEEEcCeeeecHHHHHHHHhhcCC-CCceEEEEeecCcccccCCCccccCCccccCC--
Q 017892 195 EFPNKAKLFFAYAVDKWDAEYYAKVNDDVYVNIDSLGATLATHLD-KPRVYIGCMKSGDVFSEPGHKWYEPDWWKFGD-- 271 (364)
Q Consensus 195 nLt~Kt~~~~~wa~~~~~a~f~lKvDDDvfVnl~~L~~~L~~~~~-~~~lyiG~~~~~~v~r~~~~Kwy~p~~w~~y~-- 271 (364)
....|+-............++++..|+|+.|+++.|..++..... +-.+ +.++..+.+.+. .....+..+..+.+
T Consensus 14 g~N~Kv~nL~~~~~~~a~~d~~~~~DsDi~v~p~~L~~lv~~l~~p~vgl-Vt~~~~~~~~~~-~~~~l~~~~~~~~~~~ 91 (175)
T PF13506_consen 14 GCNPKVNNLAQGLEAGAKYDYLVISDSDIRVPPDYLRELVAPLADPGVGL-VTGLPRGVPARG-FWSRLEAAFFNFLPGV 91 (175)
T ss_pred CCChHHHHHHHHHHhhCCCCEEEEECCCeeECHHHHHHHHHHHhCCCCcE-EEecccccCCcC-HHHHHHHHHHhHHHHH
Confidence 345666666555443367899999999999999999999887653 2222 222222111110 00001111000100
Q ss_pred --CCCcCcCccCCeEeeCHHHHHHHHHhcccCCCCCcchHHHHHHHhcCCCeEecCC
Q 017892 272 --KKLYFRHASGEMYVISRALAKFISINRSILRTYAHDDVSAGSWFLGLDVKYLNEG 326 (364)
Q Consensus 272 --~~~Yp~y~~G~gYvlS~dla~~I~~~~~~l~~~~~EDV~vG~~l~~l~V~~i~~~ 326 (364)
.-...+++.|+.+++.++++..+-- ...+..+--||..+|..+...|.+.+-.+
T Consensus 92 ~~a~~~~~~~~G~~m~~rr~~L~~~GG-~~~l~~~ladD~~l~~~~~~~G~~v~~~~ 147 (175)
T PF13506_consen 92 LQALGGAPFAWGGSMAFRREALEEIGG-FEALADYLADDYALGRRLRARGYRVVLSP 147 (175)
T ss_pred HHHhcCCCceecceeeeEHHHHHHccc-HHHHhhhhhHHHHHHHHHHHCCCeEEEcc
Confidence 0124678999999999999987631 12334466999999999988887766444
No 16
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=94.46 E-value=2.6 Score=42.41 Aligned_cols=114 Identities=18% Similarity=0.065 Sum_probs=63.1
Q ss_pred HHHHHHHh-CCCccEEEEEcCeeeecHHHHHHHHhhcCCCC-ceEEEEeecCcccccCCCcccc-----------CCccc
Q 017892 202 LFFAYAVD-KWDAEYYAKVNDDVYVNIDSLGATLATHLDKP-RVYIGCMKSGDVFSEPGHKWYE-----------PDWWK 268 (364)
Q Consensus 202 ~~~~wa~~-~~~a~f~lKvDDDvfVnl~~L~~~L~~~~~~~-~lyiG~~~~~~v~r~~~~Kwy~-----------p~~w~ 268 (364)
..++.+.+ ..+.+|++..|+|+.+.++.|.+.++.....+ .+..|...... .....+... |..|
T Consensus 122 ~g~~~A~~~~~~gd~llflDaD~~~~p~~l~~lv~~~~~~~~~~vs~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~- 198 (384)
T TIGR03469 122 QGIAAARTLAPPADYLLLTDADIAHGPDNLARLVARARAEGLDLVSLMVRLRC--ESFWEKLLIPAFVFFFQKLYPFRW- 198 (384)
T ss_pred HHHHHHhccCCCCCEEEEECCCCCCChhHHHHHHHHHHhCCCCEEEecccccC--CCHHHHHHHHHHHHHHHHhcchhh-
Confidence 35555544 33489999999999999999888887654322 23222221100 000000000 1000
Q ss_pred cCCCCCcCcCccCCeEeeCHHHHHHHHHhcccCCCCCcchHHHHHHHhcCC
Q 017892 269 FGDKKLYFRHASGEMYVISRALAKFISINRSILRTYAHDDVSAGSWFLGLD 319 (364)
Q Consensus 269 ~y~~~~Yp~y~~G~gYvlS~dla~~I~~~~~~l~~~~~EDV~vG~~l~~l~ 319 (364)
..........+.|++.++++++.+.+---...... ..||+.++.-+...|
T Consensus 199 ~~~~~~~~~~~~G~~~lirr~~~~~vGGf~~~~~~-~~ED~~L~~r~~~~G 248 (384)
T TIGR03469 199 VNDPRRRTAAAAGGCILIRREALERIGGIAAIRGA-LIDDCTLAAAVKRSG 248 (384)
T ss_pred hcCCCccceeecceEEEEEHHHHHHcCCHHHHhhC-cccHHHHHHHHHHcC
Confidence 00111223446899999999999987322112122 379999998886554
No 17
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=93.36 E-value=5 Score=36.23 Aligned_cols=161 Identities=9% Similarity=-0.044 Sum_probs=81.1
Q ss_pred CCeEEEEEeecCCCCCCcchhhhHHhhhhCCCeeeeCCCCCCCCCchHHHHHHHHHHHhCCCccEEEEEcCeeeecHHHH
Q 017892 151 KGIITRFVIGRSANRGDSLDQDIDSENKQTNDFFILDHHVEAPKEFPNKAKLFFAYAVDKWDAEYYAKVNDDVYVNIDSL 230 (364)
Q Consensus 151 ~~i~v~FvvG~s~~~~~~~~~~I~~E~~~~~Dil~l~d~~Dsy~nLt~Kt~~~~~wa~~~~~a~f~lKvDDDvfVnl~~L 230 (364)
..+.++.|-+.+.+ .....++...+++..+..+. . ++ .... ..+..+.+....+|++.+|||..+.++.|
T Consensus 30 ~~~evivvd~~s~d---~~~~~~~~~~~~~~~v~~i~-~-~~-~~~~----~a~N~g~~~a~~d~v~~lD~D~~~~~~~l 99 (249)
T cd02525 30 DLIEIIVVDGGSTD---GTREIVQEYAAKDPRIRLID-N-PK-RIQS----AGLNIGIRNSRGDIIIRVDAHAVYPKDYI 99 (249)
T ss_pred CccEEEEEeCCCCc---cHHHHHHHHHhcCCeEEEEe-C-CC-CCch----HHHHHHHHHhCCCEEEEECCCccCCHHHH
Confidence 34566666555443 33344444444433343331 1 11 1111 35666666557899999999999999888
Q ss_pred HHHHhhcCCC-CceEEEEeec--Cccccc----CCCccccCCc-cccCCCCCcCcCccCCeEeeCHHHHHHHHHhcccCC
Q 017892 231 GATLATHLDK-PRVYIGCMKS--GDVFSE----PGHKWYEPDW-WKFGDKKLYFRHASGEMYVISRALAKFISINRSILR 302 (364)
Q Consensus 231 ~~~L~~~~~~-~~lyiG~~~~--~~v~r~----~~~Kwy~p~~-w~~y~~~~Yp~y~~G~gYvlS~dla~~I~~~~~~l~ 302 (364)
...++..... ..+..|.... ..+... ....++.... +........-.++.|.+.++++++...+--....
T Consensus 100 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-- 177 (249)
T cd02525 100 LELVEALKRTGADNVGGPMETIGESKFQKAIAVAQSSPLGSGGSAYRGGAVKIGYVDTVHHGAYRREVFEKVGGFDES-- 177 (249)
T ss_pred HHHHHHHhcCCCCEEecceecCCCChHHHHHHHHhhchhccCCccccccccccccccccccceEEHHHHHHhCCCCcc--
Confidence 8888655432 2334444321 111100 0000000000 0000000101145678888999998877432221
Q ss_pred CCCcchHHHHHHHhcCCCeEe
Q 017892 303 TYAHDDVSAGSWFLGLDVKYL 323 (364)
Q Consensus 303 ~~~~EDV~vG~~l~~l~V~~i 323 (364)
....||..++.-+...|.+..
T Consensus 178 ~~~~eD~~l~~r~~~~G~~~~ 198 (249)
T cd02525 178 LVRNEDAELNYRLRKAGYKIW 198 (249)
T ss_pred cCccchhHHHHHHHHcCcEEE
Confidence 234799999876665554443
No 18
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=92.82 E-value=6.6 Score=34.87 Aligned_cols=135 Identities=15% Similarity=0.116 Sum_probs=78.3
Q ss_pred eEEEEEeecCCCCCCcchhhhHHhhhhCC--CeeeeCCCCCCCCCchHHHHHHHHHHHhCCCccEEEEEcCeeeecHHHH
Q 017892 153 IITRFVIGRSANRGDSLDQDIDSENKQTN--DFFILDHHVEAPKEFPNKAKLFFAYAVDKWDAEYYAKVNDDVYVNIDSL 230 (364)
Q Consensus 153 i~v~FvvG~s~~~~~~~~~~I~~E~~~~~--Dil~l~d~~Dsy~nLt~Kt~~~~~wa~~~~~a~f~lKvDDDvfVnl~~L 230 (364)
+.+++|...+.+ .....+++-...+. ++.++..... .....|... +..+.+....+|++..|+|+.+.++.|
T Consensus 31 ~eiivVdd~s~d---~t~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~~~~~-~n~g~~~a~~d~i~~~D~D~~~~~~~l 104 (196)
T cd02520 31 YEILFCVQDEDD---PAIPVVRKLIAKYPNVDARLLIGGEK--VGINPKVNN-LIKGYEEARYDILVISDSDISVPPDYL 104 (196)
T ss_pred eEEEEEeCCCcc---hHHHHHHHHHHHCCCCcEEEEecCCc--CCCCHhHHH-HHHHHHhCCCCEEEEECCCceEChhHH
Confidence 667777766543 22233444344454 3322211111 122344432 455556567899999999999999888
Q ss_pred HHHHhhcCCCCceEEEEeecCcccccCCCccccCCccccCCCCCcCcCccCCeEeeCHHHHHHHHHhcccCCCCCcchHH
Q 017892 231 GATLATHLDKPRVYIGCMKSGDVFSEPGHKWYEPDWWKFGDKKLYFRHASGEMYVISRALAKFISINRSILRTYAHDDVS 310 (364)
Q Consensus 231 ~~~L~~~~~~~~lyiG~~~~~~v~r~~~~Kwy~p~~w~~y~~~~Yp~y~~G~gYvlS~dla~~I~~~~~~l~~~~~EDV~ 310 (364)
...+.... .+.+ |.+.+ .++.|++.++.+++.+.+---. ....+..||..
T Consensus 105 ~~l~~~~~-~~~~--~~v~~--------------------------~~~~g~~~~~r~~~~~~~ggf~-~~~~~~~eD~~ 154 (196)
T cd02520 105 RRMVAPLM-DPGV--GLVTC--------------------------LCAFGKSMALRREVLDAIGGFE-AFADYLAEDYF 154 (196)
T ss_pred HHHHHHhh-CCCC--CeEEe--------------------------ecccCceeeeEHHHHHhccChH-HHhHHHHHHHH
Confidence 88877642 1211 21110 0467899999999998774321 12223479999
Q ss_pred HHHHHhcCCCeEe
Q 017892 311 AGSWFLGLDVKYL 323 (364)
Q Consensus 311 vG~~l~~l~V~~i 323 (364)
++.-+...|.+..
T Consensus 155 l~~rl~~~G~~i~ 167 (196)
T cd02520 155 LGKLIWRLGYRVV 167 (196)
T ss_pred HHHHHHHcCCeEE
Confidence 9988865554443
No 19
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=91.81 E-value=6.8 Score=34.87 Aligned_cols=123 Identities=11% Similarity=-0.066 Sum_probs=67.0
Q ss_pred HHHHHHhCCCccEEEEEcCeeeecHHHHHHHHhhcC-CCCceEEEEeecCcc---ccc-CCCccccCC-ccccCCCCCcC
Q 017892 203 FFAYAVDKWDAEYYAKVNDDVYVNIDSLGATLATHL-DKPRVYIGCMKSGDV---FSE-PGHKWYEPD-WWKFGDKKLYF 276 (364)
Q Consensus 203 ~~~wa~~~~~a~f~lKvDDDvfVnl~~L~~~L~~~~-~~~~lyiG~~~~~~v---~r~-~~~Kwy~p~-~w~~y~~~~Yp 276 (364)
.+.++.+....+|++.+|+|..+.++.|..++.... +....+.|.....++ ... ..-.+.... .........++
T Consensus 73 a~n~g~~~~~~d~i~~~D~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (229)
T cd04192 73 ALTTAIKAAKGDWIVTTDADCVVPSNWLLTFVAFIQKEQIGLVAGPVIYFKGKSLLAKFQRLDWLSLLGLIAGSFGLGKP 152 (229)
T ss_pred HHHHHHHHhcCCEEEEECCCcccCHHHHHHHHHHhhcCCCcEEeeeeeecCCccHHHHHHHHHHHHHHHHHhhHHHhcCc
Confidence 345666666789999999999999998888887553 233345554321110 000 000000000 00000123456
Q ss_pred cCccCCeEeeCHHHHHHHHHhcccCCCCCcchHHHHHH--HhcC-CCeEecCC
Q 017892 277 RHASGEMYVISRALAKFISINRSILRTYAHDDVSAGSW--FLGL-DVKYLNEG 326 (364)
Q Consensus 277 ~y~~G~gYvlS~dla~~I~~~~~~l~~~~~EDV~vG~~--l~~l-~V~~i~~~ 326 (364)
..+.|+++++++++...+---... .....||.-++.- ..+. .+..+.++
T Consensus 153 ~~~~g~~~~~rr~~~~~~ggf~~~-~~~~~eD~~~~~~~~~~g~~~~~~~~~~ 204 (229)
T cd04192 153 FMCNGANMAYRKEAFFEVGGFEGN-DHIASGDDELLLAKVASKYPKVAYLKNP 204 (229)
T ss_pred cccccceEEEEHHHHHHhcCCccc-cccccCCHHHHHHHHHhCCCCEEEeeCc
Confidence 667899999999999987543222 2234566655533 3455 45555443
No 20
>cd06532 Glyco_transf_25 Glycosyltransferase family 25 [lipooligosaccharide (LOS) biosynthesis protein] is a family of glycosyltransferases involved in LOS biosynthesis. The members include the beta(1,4) galactosyltransferases: Lgt2 of Moraxella catarrhalis, LgtB and LgtE of Neisseria gonorrhoeae and Lic2A of Haemophilus influenzae. M. catarrhalis Lgt2 catalyzes the addition of galactose (Gal) to the growing chain of LOS on the cell surface. N. gonorrhoeae LgtB and LgtE link Gal-beta(1,4) to GlcNAc (N-acetylglucosamine) and Glc (glucose), respectively. The genes encoding LgtB and LgtE are two genes of a five gene locus involved in the synthesis of gonococcal LOS. LgtE is believed to perform the first step in LOS biosynthesis.
Probab=91.76 E-value=2 Score=36.44 Aligned_cols=111 Identities=13% Similarity=0.096 Sum_probs=68.0
Q ss_pred EEeCCCCCHHHHHHHHHHHhcCcchhhccccCCCeEEEEEeecCCCCCCcchhhhHHhhh-----hCCCeeeeCCCCCCC
Q 017892 119 GILTRFGRKNNRDAIRKAWMGTGAALKKRENEKGIITRFVIGRSANRGDSLDQDIDSENK-----QTNDFFILDHHVEAP 193 (364)
Q Consensus 119 ~V~S~~~~~~rR~aIR~TW~~~~~~lk~Le~~~~i~v~FvvG~s~~~~~~~~~~I~~E~~-----~~~Dil~l~d~~Dsy 193 (364)
.|.+-+...+||+.+++..... ++.+.|+-|-.... .....+..... .++-- ..-+-
T Consensus 3 ~vInL~~~~~Rr~~~~~~~~~~-----------~~~~~~~~Avd~~~--~~~~~~~~~~~~~~~~~~~~~-----l~~gE 64 (128)
T cd06532 3 FVINLDRSTDRRERMEAQLAAL-----------GLDFEFFDAVDGKD--LSEEELAALYDALFLPRYGRP-----LTPGE 64 (128)
T ss_pred EEEECCCCHHHHHHHHHHHHHc-----------CCCeEEEecccccc--CCHHHHHHHhHHHhhhhcCCC-----CChhh
Confidence 3566778889999999855433 35577777665431 11112221111 11111 11121
Q ss_pred CCchHHHHHHHHHHHhCCCccEEEEEcCeeeecHHHHHHHHhhcCCCCceEEEEeecCcccccCCCccccCCccccCCCC
Q 017892 194 KEFPNKAKLFFAYAVDKWDAEYYAKVNDDVYVNIDSLGATLATHLDKPRVYIGCMKSGDVFSEPGHKWYEPDWWKFGDKK 273 (364)
Q Consensus 194 ~nLt~Kt~~~~~wa~~~~~a~f~lKvDDDvfVnl~~L~~~L~~~~~~~~lyiG~~~~~~v~r~~~~Kwy~p~~w~~y~~~ 273 (364)
-.-.+..+..++.+++ .+.++.+-..||+.+..+
T Consensus 65 iGC~lSH~~~w~~~~~-~~~~~alIlEDDv~~~~~--------------------------------------------- 98 (128)
T cd06532 65 IGCFLSHYKLWQKIVE-SNLEYALILEDDAILDPD--------------------------------------------- 98 (128)
T ss_pred HHHHHHHHHHHHHHHH-cCCCeEEEEccCcEECCC---------------------------------------------
Confidence 2224555666777666 356899999999999887
Q ss_pred CcCcCccCCeEeeCHHHHHHHHHhcc
Q 017892 274 LYFRHASGEMYVISRALAKFISINRS 299 (364)
Q Consensus 274 ~Yp~y~~G~gYvlS~dla~~I~~~~~ 299 (364)
+..+|+||+..|+++.....
T Consensus 99 ------~~~~Y~vs~~~A~~ll~~~~ 118 (128)
T cd06532 99 ------GTAGYLVSRKGAKKLLAALE 118 (128)
T ss_pred ------CceEEEeCHHHHHHHHHhCC
Confidence 34689999999999987543
No 21
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=90.47 E-value=9.3 Score=31.84 Aligned_cols=83 Identities=17% Similarity=0.132 Sum_probs=53.7
Q ss_pred HhCCCccEEEEEcCeeeecHHHHHHHHhhcCCCCce-EEEEeecCcccccCCCccccCCccccCCCCCcCcCccCCeEee
Q 017892 208 VDKWDAEYYAKVNDDVYVNIDSLGATLATHLDKPRV-YIGCMKSGDVFSEPGHKWYEPDWWKFGDKKLYFRHASGEMYVI 286 (364)
Q Consensus 208 ~~~~~a~f~lKvDDDvfVnl~~L~~~L~~~~~~~~l-yiG~~~~~~v~r~~~~Kwy~p~~w~~y~~~~Yp~y~~G~gYvl 286 (364)
.+..+.+|++..|||..+.++.+..++......+.+ .++.. +.|++.++
T Consensus 70 ~~~~~~~~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~~~~~------------------------------~~~~~~~~ 119 (166)
T cd04186 70 IREAKGDYVLLLNPDTVVEPGALLELLDAAEQDPDVGIVGPK------------------------------VSGAFLLV 119 (166)
T ss_pred HhhCCCCEEEEECCCcEECccHHHHHHHHHHhCCCceEEEcc------------------------------CceeeEee
Confidence 333479999999999999999888888754333222 11111 67889999
Q ss_pred CHHHHHHHHHhcccCCCCCcchHHHHHHHhcCCCe
Q 017892 287 SRALAKFISINRSILRTYAHDDVSAGSWFLGLDVK 321 (364)
Q Consensus 287 S~dla~~I~~~~~~l~~~~~EDV~vG~~l~~l~V~ 321 (364)
++++++.+---...... ..||..+..-+...|.+
T Consensus 120 ~~~~~~~~~~~~~~~~~-~~eD~~~~~~~~~~g~~ 153 (166)
T cd04186 120 RREVFEEVGGFDEDFFL-YYEDVDLCLRARLAGYR 153 (166)
T ss_pred eHHHHHHcCCCChhhhc-cccHHHHHHHHHHcCCe
Confidence 99988876422222212 56888877666544433
No 22
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=90.35 E-value=12 Score=35.74 Aligned_cols=126 Identities=11% Similarity=0.151 Sum_probs=69.1
Q ss_pred HHHHHhCCCccEEEEEcCeeeecHHHHHHHHhhcCCCCceEEE-Eeec--Ccccc--cCC------------CccccC-C
Q 017892 204 FAYAVDKWDAEYYAKVNDDVYVNIDSLGATLATHLDKPRVYIG-CMKS--GDVFS--EPG------------HKWYEP-D 265 (364)
Q Consensus 204 ~~wa~~~~~a~f~lKvDDDvfVnl~~L~~~L~~~~~~~~lyiG-~~~~--~~v~r--~~~------------~Kwy~p-~ 265 (364)
...+.+.-..+|++..|+|+.+.++-|..++......+...+| .+.. +.-.+ ... ..|... .
T Consensus 75 ~N~g~~~A~gd~i~fLD~D~~~~~~wL~~ll~~l~~~~~~~v~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (299)
T cd02510 75 RIAGARAATGDVLVFLDSHCEVNVGWLEPLLARIAENRKTVVCPIIDVIDADTFEYRGSSGDARGGFDWSLHFKWLPLPE 154 (299)
T ss_pred HHHHHHHccCCEEEEEeCCcccCccHHHHHHHHHHhCCCeEEEeeeccccCCCeeEecCCCceeEEecccceeccccCCH
Confidence 4444444568999999999999988887777765433333332 2211 10000 000 011100 0
Q ss_pred cc---ccCCCCCcCcCccCCeEeeCHHHHHHHHHhcccCCCCCcchHHHH--HHHhcCCCeEecCCCcc
Q 017892 266 WW---KFGDKKLYFRHASGEMYVISRALAKFISINRSILRTYAHDDVSAG--SWFLGLDVKYLNEGKFC 329 (364)
Q Consensus 266 ~w---~~y~~~~Yp~y~~G~gYvlS~dla~~I~~~~~~l~~~~~EDV~vG--~~l~~l~V~~i~~~~f~ 329 (364)
.+ ...+....-++++|+++++++++...+---...+..+..||+-+. .|..|..+..+.+....
T Consensus 155 ~~~~~~~~~~~~~~~~~~g~~~~irr~~~~~vGgfDe~~~~~~~ED~Dl~~R~~~~G~~i~~~p~a~v~ 223 (299)
T cd02510 155 EERRRESPTAPIRSPTMAGGLFAIDREWFLELGGYDEGMDIWGGENLELSFKVWQCGGSIEIVPCSRVG 223 (299)
T ss_pred HHhhhcCCCCCccCccccceeeEEEHHHHHHhCCCCCcccccCchhHHHHHHHHHcCCeEEEeeccEEE
Confidence 00 000012234567899999999999988644444555667998765 55556655555444333
No 23
>PF13632 Glyco_trans_2_3: Glycosyl transferase family group 2
Probab=90.13 E-value=0.96 Score=40.03 Aligned_cols=115 Identities=13% Similarity=0.031 Sum_probs=67.9
Q ss_pred EEEEEcCeeeecHHHHHHHHhhcCCCCceEE--EEeecCcccccCCCccccCCc-c---c---cCCCCCcCcCccCCeEe
Q 017892 215 YYAKVNDDVYVNIDSLGATLATHLDKPRVYI--GCMKSGDVFSEPGHKWYEPDW-W---K---FGDKKLYFRHASGEMYV 285 (364)
Q Consensus 215 f~lKvDDDvfVnl~~L~~~L~~~~~~~~lyi--G~~~~~~v~r~~~~Kwy~p~~-w---~---~y~~~~Yp~y~~G~gYv 285 (364)
|++-+|+|+.+..+-|...+.... .+++-+ |.... ......-.++...++ + . .......+.++.|++.+
T Consensus 1 ~v~~~DaDt~~~~d~l~~~~~~~~-~~~~~~vq~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~ 78 (193)
T PF13632_consen 1 YVLFLDADTRLPPDFLERLVAALE-DPKVDAVQGPIIF-RNRGSLLTRLQDFEYAISHGLSRLSQSSLGRPLFLSGSGML 78 (193)
T ss_pred CEEEEcCCCCCChHHHHHHHHHHh-CCCceEEEccEEe-cCCCChhheeehhhhhhhhhhhHHHHHhcCCCccccCccee
Confidence 689999999999999888887765 333222 22221 000011111221111 0 0 11123456778999999
Q ss_pred eCHHHHHHHHHhcccCCCCCcchHHHHHHHh--cCCCeEecCCCcccCCC
Q 017892 286 ISRALAKFISINRSILRTYAHDDVSAGSWFL--GLDVKYLNEGKFCCSSW 333 (364)
Q Consensus 286 lS~dla~~I~~~~~~l~~~~~EDV~vG~~l~--~l~V~~i~~~~f~~~~~ 333 (364)
+++++++.+.--. -..+..||..++.-+. |..+.++++....+..|
T Consensus 79 ~r~~~l~~vg~~~--~~~~~~ED~~l~~~l~~~G~~~~~~~~~~~~~~~p 126 (193)
T PF13632_consen 79 FRREALREVGGFD--DPFSIGEDMDLGFRLRRAGYRIVYVPDAIVYTEAP 126 (193)
T ss_pred eeHHHHHHhCccc--ccccccchHHHHHHHHHCCCEEEEecccceeeeCC
Confidence 9999999875322 2345579999986664 55566677765555544
No 24
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=90.06 E-value=13 Score=32.80 Aligned_cols=107 Identities=18% Similarity=0.092 Sum_probs=62.0
Q ss_pred hHHHHHHHHHHHhCCCccEEEEEcCeeeecHHHHHHHHhhcC-CCCceEEEEeecCcccccCCCccccCCccccCCCCCc
Q 017892 197 PNKAKLFFAYAVDKWDAEYYAKVNDDVYVNIDSLGATLATHL-DKPRVYIGCMKSGDVFSEPGHKWYEPDWWKFGDKKLY 275 (364)
Q Consensus 197 t~Kt~~~~~wa~~~~~a~f~lKvDDDvfVnl~~L~~~L~~~~-~~~~lyiG~~~~~~v~r~~~~Kwy~p~~w~~y~~~~Y 275 (364)
..-.-..++++. ..+.+|++..|||..+.++.|...+.... +.-.++.|... .. ++
T Consensus 65 ~~~~n~~~~~a~-~~~~d~v~~ld~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~-------------~~------~~--- 121 (202)
T cd04185 65 AGGFYEGVRRAY-ELGYDWIWLMDDDAIPDPDALEKLLAYADKDNPQFLAPLVL-------------DP------DG--- 121 (202)
T ss_pred hhHHHHHHHHHh-ccCCCEEEEeCCCCCcChHHHHHHHHHHhcCCceEecceeE-------------cC------CC---
Confidence 333445566665 45789999999999999888777776654 22222221110 00 01
Q ss_pred CcCccCCeEeeCHHHHHHHHHhcccCCCCCcchHHHHHHHhcCCCe-EecCCCcccC
Q 017892 276 FRHASGEMYVISRALAKFISINRSILRTYAHDDVSAGSWFLGLDVK-YLNEGKFCCS 331 (364)
Q Consensus 276 p~y~~G~gYvlS~dla~~I~~~~~~l~~~~~EDV~vG~~l~~l~V~-~i~~~~f~~~ 331 (364)
.+++.++.+++...+--..... ....||+.++.-+...|.. ...+..+.+.
T Consensus 122 ----~~~~~~~~~~~~~~~g~~~~~~-~~~~eD~~~~~r~~~~G~~i~~~~~~~~h~ 173 (202)
T cd04185 122 ----SFVGVLISRRVVEKIGLPDKEF-FIWGDDTEYTLRASKAGPGIYVPDAVVVHK 173 (202)
T ss_pred ----ceEEEEEeHHHHHHhCCCChhh-hccchHHHHHHHHHHcCCcEEecceEEEEc
Confidence 3456789999988774322222 2346999988777544422 4444333333
No 25
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=89.98 E-value=7.7 Score=35.49 Aligned_cols=114 Identities=17% Similarity=0.132 Sum_probs=60.4
Q ss_pred HHHHHHhCCCccEEEEEcCeeeecHHHHHHHHhhcC-CCCceEEEEeecCccc-ccCCCccc--cCCccc-cCCCCCcCc
Q 017892 203 FFAYAVDKWDAEYYAKVNDDVYVNIDSLGATLATHL-DKPRVYIGCMKSGDVF-SEPGHKWY--EPDWWK-FGDKKLYFR 277 (364)
Q Consensus 203 ~~~wa~~~~~a~f~lKvDDDvfVnl~~L~~~L~~~~-~~~~lyiG~~~~~~v~-r~~~~Kwy--~p~~w~-~y~~~~Yp~ 277 (364)
.+..+.+....+|++.+|+|+.+..+.|.++++... +...+..|....-.+. .......+ ....+. +......+.
T Consensus 100 a~n~gi~~a~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (251)
T cd06439 100 ALNRALALATGEIVVFTDANALLDPDALRLLVRHFADPSVGAVSGELVIVDGGGSGSGEGLYWKYENWLKRAESRLGSTV 179 (251)
T ss_pred HHHHHHHHcCCCEEEEEccccCcCHHHHHHHHHHhcCCCccEEEeEEEecCCcccchhHHHHHHHHHHHHHHHHhcCCee
Confidence 345555555679999999999999888888887764 2333444443211000 00000100 000000 000112234
Q ss_pred CccCCeEeeCHHHHHHHHHhcccCCCCCcchHHHHHHHhcCCCeE
Q 017892 278 HASGEMYVISRALAKFISINRSILRTYAHDDVSAGSWFLGLDVKY 322 (364)
Q Consensus 278 y~~G~gYvlS~dla~~I~~~~~~l~~~~~EDV~vG~~l~~l~V~~ 322 (364)
.+.|+++++.+++.. ........||..++..+...|...
T Consensus 180 ~~~g~~~~~rr~~~~------~~~~~~~~eD~~l~~~~~~~G~~~ 218 (251)
T cd06439 180 GANGAIYAIRRELFR------PLPADTINDDFVLPLRIARQGYRV 218 (251)
T ss_pred eecchHHHhHHHHhc------CCCcccchhHHHHHHHHHHcCCeE
Confidence 467777777777666 112223479999988886665433
No 26
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=89.90 E-value=4.8 Score=33.28 Aligned_cols=92 Identities=15% Similarity=0.135 Sum_probs=47.9
Q ss_pred HHHHHHhCCCccEEEEEcCeeeecHHHHHHHHhhcCC-CCceEEEEee-c-C-cccccCCC---ccccCCccc-cCCCCC
Q 017892 203 FFAYAVDKWDAEYYAKVNDDVYVNIDSLGATLATHLD-KPRVYIGCMK-S-G-DVFSEPGH---KWYEPDWWK-FGDKKL 274 (364)
Q Consensus 203 ~~~wa~~~~~a~f~lKvDDDvfVnl~~L~~~L~~~~~-~~~lyiG~~~-~-~-~v~r~~~~---Kwy~p~~w~-~y~~~~ 274 (364)
.+..+.+....+|++.+|||.++..+.|..++..... ...+.+|... . . ........ .+....... ......
T Consensus 69 ~~n~~~~~a~~~~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (169)
T PF00535_consen 69 ARNRGIKHAKGEYILFLDDDDIISPDWLEELVEALEKNPPDVVIGSVIYIDDDNRYPDRRLRFSFWNRFERKIFNNIRFW 148 (169)
T ss_dssp HHHHHHHH--SSEEEEEETTEEE-TTHHHHHHHHHHHCTTEEEEEEEEEEECTTETEECCCTSEEEECCHCHHHHTTHST
T ss_pred cccccccccceeEEEEeCCCceEcHHHHHHHHHHHHhCCCcEEEEEEEEecCCccccccccchhhhhhhhhHHHHhhhcC
Confidence 3333444445679999999999998877777666543 3445556542 1 1 11111111 111110000 111223
Q ss_pred cCcCccCCeEeeCHHHHHHH
Q 017892 275 YFRHASGEMYVISRALAKFI 294 (364)
Q Consensus 275 Yp~y~~G~gYvlS~dla~~I 294 (364)
-.+++.|++.++++++.+.+
T Consensus 149 ~~~~~~~~~~~~rr~~~~~~ 168 (169)
T PF00535_consen 149 KISFFIGSCALFRRSVFEEI 168 (169)
T ss_dssp TSSEESSSCEEEEEHHHHHC
T ss_pred CcccccccEEEEEHHHHHhh
Confidence 44567888999999988754
No 27
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=89.49 E-value=8.2 Score=33.93 Aligned_cols=120 Identities=16% Similarity=0.089 Sum_probs=65.5
Q ss_pred HHhCCCccEEEEEcCeeeecHHHHHHHHhh-cC-CCCceEEEEee----cCcccccCCCccccCCccccCCCCCcCcCcc
Q 017892 207 AVDKWDAEYYAKVNDDVYVNIDSLGATLAT-HL-DKPRVYIGCMK----SGDVFSEPGHKWYEPDWWKFGDKKLYFRHAS 280 (364)
Q Consensus 207 a~~~~~a~f~lKvDDDvfVnl~~L~~~L~~-~~-~~~~lyiG~~~----~~~v~r~~~~Kwy~p~~w~~y~~~~Yp~y~~ 280 (364)
+......+|++..|+|..+.++.|..++.. .. +...++.|.+. .+.+.....-..+......-+.......++.
T Consensus 74 g~~~~~g~~v~~ld~Dd~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (214)
T cd04196 74 LLQAADGDYVFFCDQDDIWLPDKLERLLKAFLKDDKPLLVYSDLELVDENGNPIGESFFEYQKIKPGTSFNNLLFQNVVT 153 (214)
T ss_pred HHHhCCCCEEEEECCCcccChhHHHHHHHHHhcCCCceEEecCcEEECCCCCCcccccccccccCCccCHHHHHHhCccC
Confidence 344567899999999999999888888886 22 33334444322 1111110000000000000000112234567
Q ss_pred CCeEeeCHHHHHHHHHhcccCCCCCcchHHHHHHHhcC-CCeEecCCCc
Q 017892 281 GEMYVISRALAKFISINRSILRTYAHDDVSAGSWFLGL-DVKYLNEGKF 328 (364)
Q Consensus 281 G~gYvlS~dla~~I~~~~~~l~~~~~EDV~vG~~l~~l-~V~~i~~~~f 328 (364)
|+++++.++++..+....... ...||..+...+... .+..++...+
T Consensus 154 ~~~~~~r~~~~~~~~~~~~~~--~~~~D~~~~~~~~~~~~~~~~~~~~~ 200 (214)
T cd04196 154 GCTMAFNRELLELALPFPDAD--VIMHDWWLALLASAFGKVVFLDEPLI 200 (214)
T ss_pred CceeeEEHHHHHhhccccccc--cccchHHHHHHHHHcCceEEcchhHH
Confidence 899999999999876432222 457888777655443 4555555444
No 28
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=89.00 E-value=12 Score=33.72 Aligned_cols=133 Identities=9% Similarity=-0.069 Sum_probs=67.5
Q ss_pred hHHHHHHHHHHHhCCCccEEEEEcCeeeecHHHHHHHH---hhcCCCCce-EEEEeecCcccccCCCccccCCcc-----
Q 017892 197 PNKAKLFFAYAVDKWDAEYYAKVNDDVYVNIDSLGATL---ATHLDKPRV-YIGCMKSGDVFSEPGHKWYEPDWW----- 267 (364)
Q Consensus 197 t~Kt~~~~~wa~~~~~a~f~lKvDDDvfVnl~~L~~~L---~~~~~~~~l-yiG~~~~~~v~r~~~~Kwy~p~~w----- 267 (364)
..=.-.+++.+... +++|++..|||+.+.++.|..++ ......+.+ .+|..............+....++
T Consensus 61 ~~a~N~g~~~a~~~-~~d~v~~lD~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (237)
T cd02526 61 AKALNIGIKAALEN-GADYVLLFDQDSVPPPDMVEKLLAYKILSDKNSNIGAVGPRIIDRRTGENSPGVRKSGYKLRIQK 139 (237)
T ss_pred HHhhhHHHHHHHhC-CCCEEEEECCCCCcCHhHHHHHHHHHHhhccCCCeEEEeeeEEcCCCCeeccceeccCccceecc
Confidence 33334455555442 68999999999999999988885 333223332 223321110000000001110000
Q ss_pred ccCCCCCcCcCccCCeEeeCHHHHHHHHHhcccCCCCCcchHHHHHHHhcCC--CeEecCCCcccC
Q 017892 268 KFGDKKLYFRHASGEMYVISRALAKFISINRSILRTYAHDDVSAGSWFLGLD--VKYLNEGKFCCS 331 (364)
Q Consensus 268 ~~y~~~~Yp~y~~G~gYvlS~dla~~I~~~~~~l~~~~~EDV~vG~~l~~l~--V~~i~~~~f~~~ 331 (364)
.......-..++.|++.++++++...+---...+ .+..||+-++.-+...| +..+.+....+.
T Consensus 140 ~~~~~~~~~~~~~~~~~~~rr~~~~~~ggfd~~~-~~~~eD~d~~~r~~~~G~~~~~~~~~~v~h~ 204 (237)
T cd02526 140 EGEEGLKEVDFLITSGSLISLEALEKVGGFDEDL-FIDYVDTEWCLRARSKGYKIYVVPDAVLKHE 204 (237)
T ss_pred cccCCceEeeeeeccceEEcHHHHHHhCCCCHHH-cCccchHHHHHHHHHcCCcEEEEcCeEEEec
Confidence 0001111123456778899999988874322222 23468998887775544 444444444433
No 29
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=87.02 E-value=9.7 Score=31.31 Aligned_cols=94 Identities=9% Similarity=0.070 Sum_probs=50.6
Q ss_pred HHHHHHHhCCCccEEEEEcCeeeecHHHHHHHHhhcCCCCc--eEEEEeecC----cccccCC-CccccCCcc--ccCCC
Q 017892 202 LFFAYAVDKWDAEYYAKVNDDVYVNIDSLGATLATHLDKPR--VYIGCMKSG----DVFSEPG-HKWYEPDWW--KFGDK 272 (364)
Q Consensus 202 ~~~~wa~~~~~a~f~lKvDDDvfVnl~~L~~~L~~~~~~~~--lyiG~~~~~----~v~r~~~-~Kwy~p~~w--~~y~~ 272 (364)
....++.+..+.+|++.+|||..+..+.|..++......+. +..|..... ..+.... .+++..... .....
T Consensus 68 ~~~n~~~~~~~~~~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (180)
T cd06423 68 GALNAGLRHAKGDIVVVLDADTILEPDALKRLVVPFFADPKVGAVQGRVRVRNGSENLLTRLQAIEYLSIFRLGRRAQSA 147 (180)
T ss_pred HHHHHHHHhcCCCEEEEECCCCCcChHHHHHHHHHhccCCCeeeEeeeEEEecCcCcceeccchheecceeeeeeehhhe
Confidence 44555555558999999999999998888887555433332 333332211 1111000 001000000 00001
Q ss_pred CCcCcCccCCeEeeCHHHHHHHH
Q 017892 273 KLYFRHASGEMYVISRALAKFIS 295 (364)
Q Consensus 273 ~~Yp~y~~G~gYvlS~dla~~I~ 295 (364)
..++.++.|.++++++++...+-
T Consensus 148 ~~~~~~~~g~~~~~~~~~~~~~g 170 (180)
T cd06423 148 LGGVLVLSGAFGAFRREALREVG 170 (180)
T ss_pred ecceeecCchHHHHHHHHHHHhC
Confidence 23446678899999999888764
No 30
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=85.83 E-value=25 Score=31.37 Aligned_cols=123 Identities=15% Similarity=0.064 Sum_probs=69.7
Q ss_pred HHHHHhCCCccEEEEEcCeeeecHHHHHHHHhhcCCCCce--EEEEee--cCcc----cccC--CCccccCC-ccccCCC
Q 017892 204 FAYAVDKWDAEYYAKVNDDVYVNIDSLGATLATHLDKPRV--YIGCMK--SGDV----FSEP--GHKWYEPD-WWKFGDK 272 (364)
Q Consensus 204 ~~wa~~~~~a~f~lKvDDDvfVnl~~L~~~L~~~~~~~~l--yiG~~~--~~~v----~r~~--~~Kwy~p~-~w~~y~~ 272 (364)
+..+.+..+.+|++.+|+|.++.++.|..++......+++ ..|... .... .+.. ....+... .+. ..
T Consensus 76 ~n~~~~~a~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 153 (234)
T cd06421 76 LNNALAHTTGDFVAILDADHVPTPDFLRRTLGYFLDDPKVALVQTPQFFYNPDPFDWLADGAPNEQELFYGVIQPG--RD 153 (234)
T ss_pred HHHHHHhCCCCEEEEEccccCcCccHHHHHHHHHhcCCCeEEEecceEEecCCcchhHHHHHHHHHHHHHHHHHHH--Hh
Confidence 4555555578999999999999999888888776543332 222211 1100 0000 00000000 000 00
Q ss_pred CCcCcCccCCeEeeCHHHHHHHHHhcccCCCCCcchHHHHHHHhcCC--CeEecCCCcccC
Q 017892 273 KLYFRHASGEMYVISRALAKFISINRSILRTYAHDDVSAGSWFLGLD--VKYLNEGKFCCS 331 (364)
Q Consensus 273 ~~Yp~y~~G~gYvlS~dla~~I~~~~~~l~~~~~EDV~vG~~l~~l~--V~~i~~~~f~~~ 331 (364)
.....++.|++.++++++.+.+---. ..+..||..++.-+...| +..+++....+.
T Consensus 154 ~~~~~~~~g~~~~~r~~~~~~ig~~~---~~~~~eD~~l~~r~~~~g~~i~~~~~~~~~~~ 211 (234)
T cd06421 154 RWGAAFCCGSGAVVRREALDEIGGFP---TDSVTEDLATSLRLHAKGWRSVYVPEPLAAGL 211 (234)
T ss_pred hcCCceecCceeeEeHHHHHHhCCCC---ccceeccHHHHHHHHHcCceEEEecCcccccc
Confidence 11245678999999999998874321 234579999998776554 555665554443
No 31
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=85.71 E-value=5.5 Score=34.32 Aligned_cols=97 Identities=11% Similarity=0.020 Sum_probs=58.0
Q ss_pred HHHHHHhCCCccEEEEEcCeeeecHHHHHHHHhhcCCCCceEEEEeecCcccccCCCccccCCccccCCCCCcCcCccCC
Q 017892 203 FFAYAVDKWDAEYYAKVNDDVYVNIDSLGATLATHLDKPRVYIGCMKSGDVFSEPGHKWYEPDWWKFGDKKLYFRHASGE 282 (364)
Q Consensus 203 ~~~wa~~~~~a~f~lKvDDDvfVnl~~L~~~L~~~~~~~~lyiG~~~~~~v~r~~~~Kwy~p~~w~~y~~~~Yp~y~~G~ 282 (364)
.+..+.+....+|++..|+|..+.++-|...++...+. ....|.... ... ..-.....|+
T Consensus 70 ~~n~g~~~a~g~~i~~lD~D~~~~~~~l~~~~~~~~~~-~~v~g~~~~------------~~~-------~~~~~~~~~~ 129 (182)
T cd06420 70 IRNKAIAAAKGDYLIFIDGDCIPHPDFIADHIELAEPG-VFLSGSRVL------------LNE-------KLTERGIRGC 129 (182)
T ss_pred HHHHHHHHhcCCEEEEEcCCcccCHHHHHHHHHHhCCC-cEEecceee------------ccc-------ccceeEeccc
Confidence 34455555678999999999999998888888766322 222232110 000 0001334577
Q ss_pred eEeeCHHHHHHHHHhcccCCCCCcchHHHHHHHhcCC
Q 017892 283 MYVISRALAKFISINRSILRTYAHDDVSAGSWFLGLD 319 (364)
Q Consensus 283 gYvlS~dla~~I~~~~~~l~~~~~EDV~vG~~l~~l~ 319 (364)
.+++.+.....+---......+..||+-++.-+...|
T Consensus 130 ~~~~~r~~~~~~ggf~~~~~~~~~eD~~l~~r~~~~g 166 (182)
T cd06420 130 NMSFWKKDLLAVNGFDEEFTGWGGEDSELVARLLNSG 166 (182)
T ss_pred eEEEEHHHHHHhCCCCcccccCCcchHHHHHHHHHcC
Confidence 7888888777544333333344589998887665554
No 32
>PRK11204 N-glycosyltransferase; Provisional
Probab=85.68 E-value=42 Score=33.71 Aligned_cols=146 Identities=12% Similarity=0.116 Sum_probs=78.1
Q ss_pred hhhhHHhhhhCCCeeeeCCCCCCCCCchHHHHHHHHHHHhCCCccEEEEEcCeeeecHHHHHHHHhhcCCCCceEEEEee
Q 017892 170 DQDIDSENKQTNDFFILDHHVEAPKEFPNKAKLFFAYAVDKWDAEYYAKVNDDVYVNIDSLGATLATHLDKPRVYIGCMK 249 (364)
Q Consensus 170 ~~~I~~E~~~~~Dil~l~d~~Dsy~nLt~Kt~~~~~wa~~~~~a~f~lKvDDDvfVnl~~L~~~L~~~~~~~~lyiG~~~ 249 (364)
.+.+++..+++..+..+. .. .|. .|. ..++.+.+..+.+|++..|+|..+.++.|...++.....+++ |.+.
T Consensus 98 ~~~l~~~~~~~~~v~~i~-~~---~n~-Gka-~aln~g~~~a~~d~i~~lDaD~~~~~d~L~~l~~~~~~~~~v--~~v~ 169 (420)
T PRK11204 98 GEILDRLAAQIPRLRVIH-LA---ENQ-GKA-NALNTGAAAARSEYLVCIDGDALLDPDAAAYMVEHFLHNPRV--GAVT 169 (420)
T ss_pred HHHHHHHHHhCCcEEEEE-cC---CCC-CHH-HHHHHHHHHcCCCEEEEECCCCCCChhHHHHHHHHHHhCCCe--EEEE
Confidence 344444455555565442 22 232 243 345666666688999999999999999998888776433332 3332
Q ss_pred cCcccccCCC---ccccCCccccC-------CCCCcCcCccCCeEeeCHHHHHHHHHhcccCCCCCcchHHHHHHHhcCC
Q 017892 250 SGDVFSEPGH---KWYEPDWWKFG-------DKKLYFRHASGEMYVISRALAKFISINRSILRTYAHDDVSAGSWFLGLD 319 (364)
Q Consensus 250 ~~~v~r~~~~---Kwy~p~~w~~y-------~~~~Yp~y~~G~gYvlS~dla~~I~~~~~~l~~~~~EDV~vG~~l~~l~ 319 (364)
..+.++++.. +....++.... .....+...+|.+.++.+++...+---. +....||+-++.-+...|
T Consensus 170 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~rr~~l~~vgg~~---~~~~~ED~~l~~rl~~~G 246 (420)
T PRK11204 170 GNPRIRNRSTLLGRIQVGEFSSIIGLIKRAQRVYGRVFTVSGVITAFRKSALHEVGYWS---TDMITEDIDISWKLQLRG 246 (420)
T ss_pred CCceeccchhHHHHHHHHHHHHhhhHHHHHHHHhCCceEecceeeeeeHHHHHHhCCCC---CCcccchHHHHHHHHHcC
Confidence 2111111110 00000000000 0001122357888999999998764221 223479999997775544
Q ss_pred --CeEecCC
Q 017892 320 --VKYLNEG 326 (364)
Q Consensus 320 --V~~i~~~ 326 (364)
+...++.
T Consensus 247 ~~i~~~p~~ 255 (420)
T PRK11204 247 WDIRYEPRA 255 (420)
T ss_pred CeEEecccc
Confidence 4444443
No 33
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=84.76 E-value=7.8 Score=33.39 Aligned_cols=113 Identities=13% Similarity=-0.055 Sum_probs=63.0
Q ss_pred HHHHHHHhCCCccEEEEEcCeeeecHHHHHHHHhhc--CCCCceEEEEeec-CcccccCCCccccCCccccCCCCCcCcC
Q 017892 202 LFFAYAVDKWDAEYYAKVNDDVYVNIDSLGATLATH--LDKPRVYIGCMKS-GDVFSEPGHKWYEPDWWKFGDKKLYFRH 278 (364)
Q Consensus 202 ~~~~wa~~~~~a~f~lKvDDDvfVnl~~L~~~L~~~--~~~~~lyiG~~~~-~~v~r~~~~Kwy~p~~w~~y~~~~Yp~y 278 (364)
..+..+.+..+.+|++..|||..+..+.+...+... .+...+..|.... .........+...+.. ........+
T Consensus 65 ~a~n~~~~~a~~~~v~~ld~D~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 141 (202)
T cd06433 65 DAMNKGIALATGDIIGFLNSDDTLLPGALLAVVAAFAEHPEVDVVYGDVLLVDENGRVIGRRRPPPFL---DKFLLYGMP 141 (202)
T ss_pred HHHHHHHHHcCCCEEEEeCCCcccCchHHHHHHHHHHhCCCccEEEeeeEEEcCCCCcccCCCCcchh---hhHHhhcCc
Confidence 445555665678999999999999999999887433 2344555565421 1100000111000110 011123445
Q ss_pred ccCCeEeeCHHHHHHHHHhcccCCCCCcchHHHHHHHhcCC
Q 017892 279 ASGEMYVISRALAKFISINRSILRTYAHDDVSAGSWFLGLD 319 (364)
Q Consensus 279 ~~G~gYvlS~dla~~I~~~~~~l~~~~~EDV~vG~~l~~l~ 319 (364)
..|++.++++++...+-.-...+ ...||.-+..-+...+
T Consensus 142 ~~~~~~~~~~~~~~~~~~f~~~~--~~~~D~~~~~r~~~~g 180 (202)
T cd06433 142 ICHQATFFRRSLFEKYGGFDESY--RIAADYDLLLRLLLAG 180 (202)
T ss_pred ccCcceEEEHHHHHHhCCCchhh--CchhhHHHHHHHHHcC
Confidence 67788899999998875321122 2357877765555444
No 34
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=83.76 E-value=7.6 Score=33.67 Aligned_cols=134 Identities=11% Similarity=0.088 Sum_probs=71.2
Q ss_pred CeEEEEEeecCCCCCCcchhhhHHhhhhCCCeeeeCCCCCCCCCchHHHHHHHHHHHhCCCccEEEEEcCeeeecHHHHH
Q 017892 152 GIITRFVIGRSANRGDSLDQDIDSENKQTNDFFILDHHVEAPKEFPNKAKLFFAYAVDKWDAEYYAKVNDDVYVNIDSLG 231 (364)
Q Consensus 152 ~i~v~FvvG~s~~~~~~~~~~I~~E~~~~~Dil~l~d~~Dsy~nLt~Kt~~~~~wa~~~~~a~f~lKvDDDvfVnl~~L~ 231 (364)
.+.++.|-+.+.+ .....++....++..+..+. +.. |. .|. .+++.+.+....+|++.+|+|....++.|.
T Consensus 29 ~~eiivvdd~s~d---~t~~~~~~~~~~~~~i~~i~-~~~---n~-G~~-~a~n~g~~~a~~d~i~~~D~D~~~~~~~l~ 99 (181)
T cd04187 29 DYEIIFVDDGSTD---RTLEILRELAARDPRVKVIR-LSR---NF-GQQ-AALLAGLDHARGDAVITMDADLQDPPELIP 99 (181)
T ss_pred CeEEEEEeCCCCc---cHHHHHHHHHhhCCCEEEEE-ecC---CC-CcH-HHHHHHHHhcCCCEEEEEeCCCCCCHHHHH
Confidence 3556666655543 22233343344455454442 322 21 122 344445554567999999999999988888
Q ss_pred HHHhhcCCCCceEEEEeecC--cccccCCCccccCCccccCCCCCcCcCccCCeEeeCHHHHHHHHH
Q 017892 232 ATLATHLDKPRVYIGCMKSG--DVFSEPGHKWYEPDWWKFGDKKLYFRHASGEMYVISRALAKFISI 296 (364)
Q Consensus 232 ~~L~~~~~~~~lyiG~~~~~--~v~r~~~~Kwy~p~~w~~y~~~~Yp~y~~G~gYvlS~dla~~I~~ 296 (364)
.+++...+...+.+|..... +..+.-..+.+......+ .....+...|+.++++++++..+..
T Consensus 100 ~l~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~r~~~~~i~~ 164 (181)
T cd04187 100 EMLAKWEEGYDVVYGVRKNRKESWLKRLTSKLFYRLINKL--SGVDIPDNGGDFRLMDRKVVDALLL 164 (181)
T ss_pred HHHHHHhCCCcEEEEEecCCcchHHHHHHHHHHHHHHHHH--cCCCCCCCCCCEEEEcHHHHHHHHh
Confidence 88877555556666664321 111000000000000001 1123345678889999999998764
No 35
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=83.06 E-value=5.4 Score=35.97 Aligned_cols=155 Identities=17% Similarity=0.166 Sum_probs=77.4
Q ss_pred eEEEEEeecCCCCCCcchhhhHHhhhhCCCeeeeCCCCCCCCCchHHHHHHHHHHHhCCCccEEEEEcCeeeecHHHHHH
Q 017892 153 IITRFVIGRSANRGDSLDQDIDSENKQTNDFFILDHHVEAPKEFPNKAKLFFAYAVDKWDAEYYAKVNDDVYVNIDSLGA 232 (364)
Q Consensus 153 i~v~FvvG~s~~~~~~~~~~I~~E~~~~~Dil~l~d~~Dsy~nLt~Kt~~~~~wa~~~~~a~f~lKvDDDvfVnl~~L~~ 232 (364)
..+++|...+.+ .....+ .+...+..+.++. .+. ..|.. .+..+.+..+.+|++.+|||+.+.++.|..
T Consensus 29 ~eiivvdd~s~d---~~~~~l-~~~~~~~~~~v~~--~~~----~g~~~-a~n~g~~~a~~d~v~~lD~D~~~~~~~l~~ 97 (235)
T cd06434 29 LEIIVVTDGDDE---PYLSIL-SQTVKYGGIFVIT--VPH----PGKRR-ALAEGIRHVTTDIVVLLDSDTVWPPNALPE 97 (235)
T ss_pred CEEEEEeCCCCh---HHHHHH-HhhccCCcEEEEe--cCC----CChHH-HHHHHHHHhCCCEEEEECCCceeChhHHHH
Confidence 455566554432 222223 2344566665541 221 22332 233444445799999999999999999999
Q ss_pred HHhhcCCCCceEEEEeecCcccccC-CCcc------ccCC-ccccCCC---CCcCcCccCCeEeeCHHHHHHHHHhcc--
Q 017892 233 TLATHLDKPRVYIGCMKSGDVFSEP-GHKW------YEPD-WWKFGDK---KLYFRHASGEMYVISRALAKFISINRS-- 299 (364)
Q Consensus 233 ~L~~~~~~~~lyiG~~~~~~v~r~~-~~Kw------y~p~-~w~~y~~---~~Yp~y~~G~gYvlS~dla~~I~~~~~-- 299 (364)
.+.... .+.+ |.+.......+. ...| +... .+..+.. ..-...+.|+..++.++++..+.-...
T Consensus 98 l~~~~~-~~~v--~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~rr~~l~~~~~~~~~~ 174 (235)
T cd06434 98 MLKPFE-DPKV--GGVGTNQRILRPRDSKWSFLAAEYLERRNEEIRAAMSYDGGVPCLSGRTAAYRTEILKDFLFLEEFT 174 (235)
T ss_pred HHHhcc-CCCE--eEEcCceEeecCcccHHHHHHHHHHHHHHHHHHHHHhhCCCEEEccCcHHHHHHHHHhhhhhHHHhh
Confidence 888775 3332 222111000011 1111 0000 0000000 001123567777888888776532211
Q ss_pred -----cCCCCCcchHHHHHHHhcCCCe
Q 017892 300 -----ILRTYAHDDVSAGSWFLGLDVK 321 (364)
Q Consensus 300 -----~l~~~~~EDV~vG~~l~~l~V~ 321 (364)
..+....||..++.-+...|.+
T Consensus 175 ~~~~~~~~~~~~eD~~l~~~~~~~g~~ 201 (235)
T cd06434 175 NETFMGRRLNAGDDRFLTRYVLSHGYK 201 (235)
T ss_pred hhhhcCCCCCcCchHHHHHHHHHCCCe
Confidence 1234567999998777655544
No 36
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=82.23 E-value=24 Score=31.38 Aligned_cols=90 Identities=8% Similarity=-0.066 Sum_probs=50.6
Q ss_pred HHHHhCCCccEEEEEcCeeeecHHHHHHHHhh-cCCCCceEEEEee-cCcccccCCCcc--ccC---CccccCCCCCcCc
Q 017892 205 AYAVDKWDAEYYAKVNDDVYVNIDSLGATLAT-HLDKPRVYIGCMK-SGDVFSEPGHKW--YEP---DWWKFGDKKLYFR 277 (364)
Q Consensus 205 ~wa~~~~~a~f~lKvDDDvfVnl~~L~~~L~~-~~~~~~lyiG~~~-~~~v~r~~~~Kw--y~p---~~w~~y~~~~Yp~ 277 (364)
....+....+|++.+|+|..+.++.|..++.. ..+...+..|... .+... .....+ +.+ ..+.-.....-.+
T Consensus 71 n~g~~~a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (224)
T cd06442 71 IEGFKAARGDVIVVMDADLSHPPEYIPELLEAQLEGGADLVIGSRYVEGGGV-EGWGLKRKLISRGANLLARLLLGRKVS 149 (224)
T ss_pred HHHHHHcCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCEEEEeeeecCCcc-CCCcHHHHHHHHHHHHHHHHHcCCCCC
Confidence 33333344599999999999999988888886 4455566666532 11111 000000 000 0000000011234
Q ss_pred CccCCeEeeCHHHHHHHH
Q 017892 278 HASGEMYVISRALAKFIS 295 (364)
Q Consensus 278 y~~G~gYvlS~dla~~I~ 295 (364)
.++|++.+++++++..+-
T Consensus 150 ~~~~~~~~~~r~~~~~ig 167 (224)
T cd06442 150 DPTSGFRAYRREVLEKLI 167 (224)
T ss_pred CCCCccchhhHHHHHHHh
Confidence 578888899999999886
No 37
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=82.00 E-value=27 Score=32.03 Aligned_cols=118 Identities=8% Similarity=0.006 Sum_probs=65.4
Q ss_pred HHHHHHHhCCCccEEEEEcCeeeecHHHHHHHHhhcCCC-Cce-EEEE-eecCcccccCCCccccCCccccC----C---
Q 017892 202 LFFAYAVDKWDAEYYAKVNDDVYVNIDSLGATLATHLDK-PRV-YIGC-MKSGDVFSEPGHKWYEPDWWKFG----D--- 271 (364)
Q Consensus 202 ~~~~wa~~~~~a~f~lKvDDDvfVnl~~L~~~L~~~~~~-~~l-yiG~-~~~~~v~r~~~~Kwy~p~~w~~y----~--- 271 (364)
..+..+.+....+|++..|+|..+.++.|.+.+...... +.+ ++|. +.....-.....+++..+++..+ +
T Consensus 74 ~a~n~g~~~a~gd~i~~~DaD~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (241)
T cd06427 74 KACNYALAFARGEYVVIYDAEDAPDPDQLKKAVAAFARLDDKLACVQAPLNYYNARENWLTRMFALEYAAWFDYLLPGLA 153 (241)
T ss_pred HHHHHHHHhcCCCEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEeCceEeeCCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566665678999999999999999999988876432 333 2222 11110000000011100000000 0
Q ss_pred CCCcCcCccCCeEeeCHHHHHHHHHhcccCCCCCcchHHHHHHHhcCCCeE
Q 017892 272 KKLYFRHASGEMYVISRALAKFISINRSILRTYAHDDVSAGSWFLGLDVKY 322 (364)
Q Consensus 272 ~~~Yp~y~~G~gYvlS~dla~~I~~~~~~l~~~~~EDV~vG~~l~~l~V~~ 322 (364)
....+..+.|++.++++++...+--... ....||..++.=+...|.+.
T Consensus 154 ~~~~~~~~~g~~~~~rr~~~~~vgg~~~---~~~~eD~~l~~rl~~~G~r~ 201 (241)
T cd06427 154 RLGLPIPLGGTSNHFRTDVLRELGGWDP---FNVTEDADLGLRLARAGYRT 201 (241)
T ss_pred hcCCeeecCCchHHhhHHHHHHcCCCCc---ccchhhHHHHHHHHHCCceE
Confidence 1123334678889999999988743221 23479999987765555443
No 38
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=80.38 E-value=59 Score=33.28 Aligned_cols=158 Identities=12% Similarity=0.118 Sum_probs=83.3
Q ss_pred CeEEEEEeecCCCCCCcchhhhHHhhhhCCCeeeeCCCCCCCCCchHHHHHHHHHHHhCCCccEEEEEcCeeeecHHHHH
Q 017892 152 GIITRFVIGRSANRGDSLDQDIDSENKQTNDFFILDHHVEAPKEFPNKAKLFFAYAVDKWDAEYYAKVNDDVYVNIDSLG 231 (364)
Q Consensus 152 ~i~v~FvvG~s~~~~~~~~~~I~~E~~~~~Dil~l~d~~Dsy~nLt~Kt~~~~~wa~~~~~a~f~lKvDDDvfVnl~~L~ 231 (364)
.+.+++|...+. |...+.+++..+++..+..+. ..+ |. .|. ..++.+....+.+|++..|+|..+.++.|.
T Consensus 104 ~~eIivVdDgs~---D~t~~~~~~~~~~~~~v~vv~-~~~---n~-Gka-~AlN~gl~~a~~d~iv~lDAD~~~~~d~L~ 174 (444)
T PRK14583 104 NIEVIAINDGSS---DDTAQVLDALLAEDPRLRVIH-LAH---NQ-GKA-IALRMGAAAARSEYLVCIDGDALLDKNAVP 174 (444)
T ss_pred CeEEEEEECCCC---ccHHHHHHHHHHhCCCEEEEE-eCC---CC-CHH-HHHHHHHHhCCCCEEEEECCCCCcCHHHHH
Confidence 355555544433 233344444445565554331 111 22 243 455666666689999999999999999998
Q ss_pred HHHhhcCCCCceEEEEeecCcccccCC---CccccCCcccc-C---C-CC--CcCcCccCCeEeeCHHHHHHHHHhcccC
Q 017892 232 ATLATHLDKPRVYIGCMKSGDVFSEPG---HKWYEPDWWKF-G---D-KK--LYFRHASGEMYVISRALAKFISINRSIL 301 (364)
Q Consensus 232 ~~L~~~~~~~~lyiG~~~~~~v~r~~~---~Kwy~p~~w~~-y---~-~~--~Yp~y~~G~gYvlS~dla~~I~~~~~~l 301 (364)
..+......+++ |.+...+..++.. .+....++... + + .. .-+..++|.+.++.++++..+--..
T Consensus 175 ~lv~~~~~~~~~--g~v~g~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~g~~~~~sG~~~~~rr~al~~vGg~~--- 249 (444)
T PRK14583 175 YLVAPLIANPRT--GAVTGNPRIRTRSTLIGRVQVGEFSSIIGLIKRTQRVYGQVFTVSGVVAAFRRRALADVGYWS--- 249 (444)
T ss_pred HHHHHHHhCCCe--EEEEccceecCCCcchhhHHHHHHHHHHHHHHHHHHHhCCceEecCceeEEEHHHHHHcCCCC---
Confidence 888765333332 3333222122111 11111111000 0 0 00 1122357888999999988774322
Q ss_pred CCCCcchHHHHHHHhcCCCeEe
Q 017892 302 RTYAHDDVSAGSWFLGLDVKYL 323 (364)
Q Consensus 302 ~~~~~EDV~vG~~l~~l~V~~i 323 (364)
+..-.||.-+|.-+...|.+..
T Consensus 250 ~~~i~ED~dl~~rl~~~G~~i~ 271 (444)
T PRK14583 250 PDMITEDIDISWKLQLKHWSVF 271 (444)
T ss_pred CCcccccHHHHHHHHHcCCeEE
Confidence 1234699999987765554433
No 39
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=79.84 E-value=40 Score=29.39 Aligned_cols=116 Identities=13% Similarity=0.060 Sum_probs=62.1
Q ss_pred HHHHHHhCCCccEEEEEcCeeeecHHHHHHHHhhcC--CCCceEEEEeec--CcccccCCCccccCCc----cccCCCCC
Q 017892 203 FFAYAVDKWDAEYYAKVNDDVYVNIDSLGATLATHL--DKPRVYIGCMKS--GDVFSEPGHKWYEPDW----WKFGDKKL 274 (364)
Q Consensus 203 ~~~wa~~~~~a~f~lKvDDDvfVnl~~L~~~L~~~~--~~~~lyiG~~~~--~~v~r~~~~Kwy~p~~----w~~y~~~~ 274 (364)
.+..+....+.+|++..|+|..+.++.|...+.... +.-.++.|.+.. ..... ...+. .|.. ..+.. ..
T Consensus 71 a~N~g~~~a~gd~i~~lD~Dd~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~-~~ 147 (201)
T cd04195 71 ALNEGLKHCTYDWVARMDTDDISLPDRFEKQLDFIEKNPEIDIVGGGVLEFDSDGND-IGKRR-LPTSHDDILKFAR-RR 147 (201)
T ss_pred HHHHHHHhcCCCEEEEeCCccccCcHHHHHHHHHHHhCCCeEEEcccEEEECCCCCe-ecccc-CCCCHHHHHHHhc-cC
Confidence 345555556789999999999999998888887653 233344444321 11000 00000 1110 01100 01
Q ss_pred cCcCccCCeEeeCHHHHHHHHHhcccCCCCCcchHHHHHHHh--cCCCeEecCC
Q 017892 275 YFRHASGEMYVISRALAKFISINRSILRTYAHDDVSAGSWFL--GLDVKYLNEG 326 (364)
Q Consensus 275 Yp~y~~G~gYvlS~dla~~I~~~~~~l~~~~~EDV~vG~~l~--~l~V~~i~~~ 326 (364)
- + ..|+..++.+.+...+---. +....||..+...+. +..+.++++.
T Consensus 148 ~-~-~~~~~~~~rr~~~~~~g~~~---~~~~~eD~~~~~r~~~~g~~~~~~~~~ 196 (201)
T cd04195 148 S-P-FNHPTVMFRKSKVLAVGGYQ---DLPLVEDYALWARMLANGARFANLPEI 196 (201)
T ss_pred C-C-CCChHHhhhHHHHHHcCCcC---CCCCchHHHHHHHHHHcCCceecccHH
Confidence 1 1 24556677777766543211 225689999887764 4456665544
No 40
>PF04646 DUF604: Protein of unknown function, DUF604; InterPro: IPR006740 This family includes a conserved region found in several uncharacterised plant proteins.
Probab=79.48 E-value=3.1 Score=40.04 Aligned_cols=53 Identities=21% Similarity=0.181 Sum_probs=42.1
Q ss_pred cCCeEeeCHHHHHHHHHhc-ccC---CCCCcchHHHHHHHhcCCCeEecCCCcccCC
Q 017892 280 SGEMYVISRALAKFISINR-SIL---RTYAHDDVSAGSWFLGLDVKYLNEGKFCCSS 332 (364)
Q Consensus 280 ~G~gYvlS~dla~~I~~~~-~~l---~~~~~EDV~vG~~l~~l~V~~i~~~~f~~~~ 332 (364)
+|+|++||..||+.|.... .++ +.+.--|--+..|+..++|....+++|+...
T Consensus 12 GGgG~~iS~pLa~~L~~~~d~C~~r~~~~~g~D~~i~~C~~~lgv~LT~e~g~hQ~D 68 (255)
T PF04646_consen 12 GGGGFAISYPLAKALAKMQDDCIERYPHLYGGDQRIQACIAELGVPLTKEPGFHQMD 68 (255)
T ss_pred cCceeEEcHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCceecCCceeEe
Confidence 7899999999999998742 233 3333478889999988998888889998765
No 41
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).
Probab=78.38 E-value=42 Score=34.40 Aligned_cols=111 Identities=10% Similarity=0.123 Sum_probs=60.4
Q ss_pred HHHHHHHhCCCccEEEEEcCeeeecHHHHHHHHhhcCCCCce--EEEEeecCc-ccccCCCc--cccCC--ccc----cC
Q 017892 202 LFFAYAVDKWDAEYYAKVNDDVYVNIDSLGATLATHLDKPRV--YIGCMKSGD-VFSEPGHK--WYEPD--WWK----FG 270 (364)
Q Consensus 202 ~~~~wa~~~~~a~f~lKvDDDvfVnl~~L~~~L~~~~~~~~l--yiG~~~~~~-v~r~~~~K--wy~p~--~w~----~y 270 (364)
..++++.+..+.+|++..|+|..+.++.|...+......+.+ ..|.....+ ........ +.... +.+ ++
T Consensus 121 ~AlN~gl~~s~g~~v~~~DaD~~~~~d~L~~l~~~f~~~~~v~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~l 200 (439)
T TIGR03111 121 KALNAAIYNSIGKYIIHIDSDGKLHKDAIKNMVTRFENNPDIHAMTGVILTDKELIEKTKGRFLKLIRRCEYFEYAQAFL 200 (439)
T ss_pred HHHHHHHHHccCCEEEEECCCCCcChHHHHHHHHHHHhCCCeEEEEeEEecCchhhhhhcchhhhHhHHhHHHHHHHHHH
Confidence 455666676778999999999999999999888776433333 223332211 11000110 01100 000 00
Q ss_pred C------CCCcCcCccCCeEeeCHHHHHHHHHhcccCCCCCcchHHHHHHH
Q 017892 271 D------KKLYFRHASGEMYVISRALAKFISINRSILRTYAHDDVSAGSWF 315 (364)
Q Consensus 271 ~------~~~Yp~y~~G~gYvlS~dla~~I~~~~~~l~~~~~EDV~vG~~l 315 (364)
. ....+..++|++.++.++++..+---. ...-.||.-++.-+
T Consensus 201 ~~r~~~s~~~~~~~~sGa~~~~Rr~~l~~vggf~---~~~i~ED~~l~~rl 248 (439)
T TIGR03111 201 AGRNFESQVNSLFTLSGAFSAFRRETILKTQLYN---SETVGEDTDMTFQI 248 (439)
T ss_pred hhhHHHHhcCCeEEEccHHHhhhHHHHHHhCCCC---CCCcCccHHHHHHH
Confidence 0 001222357888888888877653211 12238999998644
No 42
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=78.01 E-value=46 Score=28.96 Aligned_cols=114 Identities=14% Similarity=0.025 Sum_probs=61.3
Q ss_pred HHHHHHhCCCccEEEEEcCeeeecHHHHHHHHhhcC--CCCceEEEEeecCcccccCCCccccCCccccCCCCC-cCcCc
Q 017892 203 FFAYAVDKWDAEYYAKVNDDVYVNIDSLGATLATHL--DKPRVYIGCMKSGDVFSEPGHKWYEPDWWKFGDKKL-YFRHA 279 (364)
Q Consensus 203 ~~~wa~~~~~a~f~lKvDDDvfVnl~~L~~~L~~~~--~~~~lyiG~~~~~~v~r~~~~Kwy~p~~w~~y~~~~-Yp~y~ 279 (364)
.+.++.+....+|++..|+|..+.++.|...++... ++..+..+.... .+.....+.+.+...+.... +..-+
T Consensus 74 a~n~g~~~a~~d~i~~ld~D~~~~~~~l~~~~~~~~~~~~~~~v~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (202)
T cd04184 74 ATNSALELATGEFVALLDHDDELAPHALYEVVKALNEHPDADLIYSDEDK----IDEGGKRSEPFFKPDWSPDLLLSQNY 149 (202)
T ss_pred HHHHHHHhhcCCEEEEECCCCcCChHHHHHHHHHHHhCCCCCEEEccHHh----ccCCCCEeccccCCCCCHHHhhhcCC
Confidence 355555555689999999999999998888887752 333333332210 01111111111000001111 11123
Q ss_pred cCCeEeeCHHHHHHHHHhcccCCCCCcchHHHHHHHhcCCCeE
Q 017892 280 SGEMYVISRALAKFISINRSILRTYAHDDVSAGSWFLGLDVKY 322 (364)
Q Consensus 280 ~G~gYvlS~dla~~I~~~~~~l~~~~~EDV~vG~~l~~l~V~~ 322 (364)
.|++-+++++++..+---... ....||.-++.-+...|.+.
T Consensus 150 ~~~~~~~~r~~~~~iggf~~~--~~~~eD~~l~~rl~~~g~~~ 190 (202)
T cd04184 150 IGHLLVYRRSLVRQVGGFREG--FEGAQDYDLVLRVSEHTDRI 190 (202)
T ss_pred ccceEeEEHHHHHHhCCCCcC--cccchhHHHHHHHHhccceE
Confidence 456668899988877532111 23469988887776555443
No 43
>COG1216 Predicted glycosyltransferases [General function prediction only]
Probab=75.93 E-value=17 Score=35.11 Aligned_cols=134 Identities=16% Similarity=0.125 Sum_probs=73.7
Q ss_pred CCCeeeeCCCCCCCCCc--hHHHHHHHHHHHhCCCccEEEEEcCeeeecHHHHHHHHhhcCCCCceE-EEEeec--C-cc
Q 017892 180 TNDFFILDHHVEAPKEF--PNKAKLFFAYAVDKWDAEYYAKVNDDVYVNIDSLGATLATHLDKPRVY-IGCMKS--G-DV 253 (364)
Q Consensus 180 ~~Dil~l~d~~Dsy~nL--t~Kt~~~~~wa~~~~~a~f~lKvDDDvfVnl~~L~~~L~~~~~~~~ly-iG~~~~--~-~v 253 (364)
+.++.++. ..+ |+ ..=.-..++.|....+. |++-.++|+.+.++.|.++++.....+... .|.... + +.
T Consensus 55 ~~~v~~i~-~~~---NlG~agg~n~g~~~a~~~~~~-~~l~LN~D~~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~ 129 (305)
T COG1216 55 FPNVRLIE-NGE---NLGFAGGFNRGIKYALAKGDD-YVLLLNPDTVVEPDLLEELLKAAEEDPAAGVVGPLIRNYDESL 129 (305)
T ss_pred CCcEEEEE-cCC---CccchhhhhHHHHHHhcCCCc-EEEEEcCCeeeChhHHHHHHHHHHhCCCCeEeeeeEecCCCCc
Confidence 67777663 222 32 11111566666653222 999999999999999999998876444333 333211 1 11
Q ss_pred cccC--------CCcc-ccCCc--c-ccCCCCCcCcCccCCeEeeCHHHHHHHHHhcccCCCCCcchHHHHHHHhcCC
Q 017892 254 FSEP--------GHKW-YEPDW--W-KFGDKKLYFRHASGEMYVISRALAKFISINRSILRTYAHDDVSAGSWFLGLD 319 (364)
Q Consensus 254 ~r~~--------~~Kw-y~p~~--w-~~y~~~~Yp~y~~G~gYvlS~dla~~I~~~~~~l~~~~~EDV~vG~~l~~l~ 319 (364)
..+. ...| +.+.. + .+.+.....+++.|++.++++++.+.+---.. --.+..||+-++.=+...|
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~li~~~~~~~vG~~de-~~F~y~eD~D~~~R~~~~G 206 (305)
T COG1216 130 YIDRRGGESDGLTGGWRASPLLEIAPDLSSYLEVVASLSGACLLIRREAFEKVGGFDE-RFFIYYEDVDLCLRARKAG 206 (305)
T ss_pred chheeccccccccccceecccccccccccchhhhhhhcceeeeEEcHHHHHHhCCCCc-ccceeehHHHHHHHHHHcC
Confidence 0000 0111 11110 0 00111122225789999999999999876222 1234599999986665554
No 44
>cd02514 GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GLCNAC-T I , GNT-I) transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide, an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus. The catalytic domain is located at the C-terminus. These proteins are members of the glycosy transferase family 13.
Probab=73.55 E-value=12 Score=37.51 Aligned_cols=104 Identities=18% Similarity=0.200 Sum_probs=61.4
Q ss_pred CCCchHHHHHHHHHHHhCCCccEEEEEcCeeeecHH---HHHHHHhhcCCCCceEEEEeecCcccccCCCccccCCcccc
Q 017892 193 PKEFPNKAKLFFAYAVDKWDAEYYAKVNDDVYVNID---SLGATLATHLDKPRVYIGCMKSGDVFSEPGHKWYEPDWWKF 269 (364)
Q Consensus 193 y~nLt~Kt~~~~~wa~~~~~a~f~lKvDDDvfVnl~---~L~~~L~~~~~~~~lyiG~~~~~~v~r~~~~Kwy~p~~w~~ 269 (364)
|..+..=.+.++.|+.+..++++++.+|||..+.++ -+.+.|......++++ |+..-. + .++...+. .
T Consensus 78 y~~ia~hyk~aln~vF~~~~~~~vIILEDDl~~sPdFf~yf~~~l~~y~~D~~v~--~ISa~N---d-nG~~~~~~---~ 148 (334)
T cd02514 78 YYRIARHYKWALTQTFNLFGYSFVIILEDDLDIAPDFFSYFQATLPLLEEDPSLW--CISAWN---D-NGKEHFVD---D 148 (334)
T ss_pred hhHHHHHHHHHHHHHHHhcCCCEEEEECCCCccCHhHHHHHHHHHHHHhcCCCEE--EEEeec---c-CCcccccC---C
Confidence 333343334477777765579999999999999998 5567776666666654 433110 1 11111100 0
Q ss_pred CCCCCcC-cCccCCeEeeCHHHHHHHHHhcccCCCCCcch
Q 017892 270 GDKKLYF-RHASGEMYVISRALAKFISINRSILRTYAHDD 308 (364)
Q Consensus 270 y~~~~Yp-~y~~G~gYvlS~dla~~I~~~~~~l~~~~~ED 308 (364)
.+...|. .|+.|.|+++.+++-..+ ....+....||
T Consensus 149 ~~~~lyrs~ff~glGWml~r~~W~e~---~~~wp~~~WD~ 185 (334)
T cd02514 149 TPSLLYRTDFFPGLGWMLTRKLWKEL---EPKWPKAFWDD 185 (334)
T ss_pred CcceEEEecCCCchHHHHHHHHHHHh---CCCCCCCChHH
Confidence 0112233 567889999999998877 23555544444
No 45
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=73.18 E-value=83 Score=29.54 Aligned_cols=127 Identities=9% Similarity=-0.048 Sum_probs=63.2
Q ss_pred HHHHHHHhCCCccEEEEEcCeeeecHHHHHHHHhhcCCCC-c-eEEEEee-c-CcccccCC---CccccCCccccCCC--
Q 017892 202 LFFAYAVDKWDAEYYAKVNDDVYVNIDSLGATLATHLDKP-R-VYIGCMK-S-GDVFSEPG---HKWYEPDWWKFGDK-- 272 (364)
Q Consensus 202 ~~~~wa~~~~~a~f~lKvDDDvfVnl~~L~~~L~~~~~~~-~-lyiG~~~-~-~~v~r~~~---~Kwy~p~~w~~y~~-- 272 (364)
..+++|.+ .+++|++..|||..+..+.|..+++.....+ . ..+|... . ......+. ..+..+.. .....
T Consensus 64 ~Gi~~a~~-~~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 141 (281)
T TIGR01556 64 QGLDASFR-RGVQGVLLLDQDSRPGNAFLAAQWKLLSAENGQACALGPRFFDRGTSRRLPAIHLDGLLLRQI-SLDGLTT 141 (281)
T ss_pred HHHHHHHH-CCCCEEEEECCCCCCCHHHHHHHHHHHHhcCCceEEECCeEEcCCCcccCCceeecccceeee-cccccCC
Confidence 45666655 3789999999999999888888776653221 2 2233211 1 00000000 00000000 00000
Q ss_pred CCcCcCccCCeEeeCHHHHHHHHHhcccCCCCCcchHHHHHHHh--cCCCeEecCCCcccC
Q 017892 273 KLYFRHASGEMYVISRALAKFISINRSILRTYAHDDVSAGSWFL--GLDVKYLNEGKFCCS 331 (364)
Q Consensus 273 ~~Yp~y~~G~gYvlS~dla~~I~~~~~~l~~~~~EDV~vG~~l~--~l~V~~i~~~~f~~~ 331 (364)
..-..++.++|.++++++.+.+---...+ .+..||+-+..=+. |..+-.+.+..+.+.
T Consensus 142 ~~~~~~~~~sg~li~~~~~~~iG~fde~~-fi~~~D~e~~~R~~~~G~~i~~~~~~~~~H~ 201 (281)
T TIGR01556 142 PQKTSFLISSGCLITREVYQRLGMMDEEL-FIDHVDTEWSLRAQNYGIPLYIDPDIVLEHR 201 (281)
T ss_pred ceeccEEEcCcceeeHHHHHHhCCccHhh-cccchHHHHHHHHHHCCCEEEEeCCEEEEEe
Confidence 01113445556689999999874322222 23468886654444 443444444444443
No 46
>COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=72.06 E-value=1.1e+02 Score=30.47 Aligned_cols=164 Identities=12% Similarity=0.045 Sum_probs=94.0
Q ss_pred eEEEEEeecCCCCCCcchhhhHHhhhhCCCeeeeCCCCCCCCCchHHHHHHHHHHHhCCCccEEEEEcCeeeecHHHHHH
Q 017892 153 IITRFVIGRSANRGDSLDQDIDSENKQTNDFFILDHHVEAPKEFPNKAKLFFAYAVDKWDAEYYAKVNDDVYVNIDSLGA 232 (364)
Q Consensus 153 i~v~FvvG~s~~~~~~~~~~I~~E~~~~~Dil~l~d~~Dsy~nLt~Kt~~~~~wa~~~~~a~f~lKvDDDvfVnl~~L~~ 232 (364)
..+..|...+. |...+.+++-..++++.+.+ ... .+-...-...+.++....+.++++..|-|+.+..+.|..
T Consensus 85 ~evivv~d~~~---d~~~~~~~~~~~~~~~~~~~-~~~---~~~~~gK~~al~~~l~~~~~d~V~~~DaD~~~~~d~l~~ 157 (439)
T COG1215 85 YEVIVVDDGST---DETYEILEELGAEYGPNFRV-IYP---EKKNGGKAGALNNGLKRAKGDVVVILDADTVPEPDALRE 157 (439)
T ss_pred ceEEEECCCCC---hhHHHHHHHHHhhcCcceEE-Eec---cccCccchHHHHHHHhhcCCCEEEEEcCCCCCChhHHHH
Confidence 45666665333 33445555555566533333 111 111222245667777766799999999999999999999
Q ss_pred HHhhcCCCCce-EEEEeec-Cccc-ccCCCccccCCcc-------ccCCCCCcCcCccCCeEeeCHHHHHHHHHhcccCC
Q 017892 233 TLATHLDKPRV-YIGCMKS-GDVF-SEPGHKWYEPDWW-------KFGDKKLYFRHASGEMYVISRALAKFISINRSILR 302 (364)
Q Consensus 233 ~L~~~~~~~~l-yiG~~~~-~~v~-r~~~~Kwy~p~~w-------~~y~~~~Yp~y~~G~gYvlS~dla~~I~~~~~~l~ 302 (364)
.+......+.. +.|.... ..+. .+...+-..-++. ........+..+.|...++.++++..+- ....
T Consensus 158 ~~~~f~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~G~~~~~rr~aL~~~g---~~~~ 234 (439)
T COG1215 158 LVSPFEDPPVGAVVGTPRIRNRPDPSNLLGRIQAIEYLSAFYFRLRAASKGGLISFLSGSSSAFRRSALEEVG---GWLE 234 (439)
T ss_pred HHhhhcCCCeeEEeCCceeeecCChhhhcchhcchhhhhhHHHhhhhhhhcCCeEEEcceeeeEEHHHHHHhC---CCCC
Confidence 99887644333 3333210 0000 0111111111110 0011223578899999999999999887 2234
Q ss_pred CCCcchHHHHHHHhcCC--CeEecCC
Q 017892 303 TYAHDDVSAGSWFLGLD--VKYLNEG 326 (364)
Q Consensus 303 ~~~~EDV~vG~~l~~l~--V~~i~~~ 326 (364)
..--||..+|..+...| +.++++.
T Consensus 235 ~~i~ED~~lt~~l~~~G~~~~~~~~~ 260 (439)
T COG1215 235 DTITEDADLTLRLHLRGYRVVYVPEA 260 (439)
T ss_pred CceeccHHHHHHHHHCCCeEEEeecc
Confidence 45579999999887555 4455444
No 47
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=66.14 E-value=64 Score=28.49 Aligned_cols=111 Identities=11% Similarity=-0.046 Sum_probs=58.2
Q ss_pred HHHHHhCCCccEEEEEcCeeeecHHHHHHHHhhcCCCCceEEEEeecCcccccCCCccccCCccccCCCCCcCcCccCCe
Q 017892 204 FAYAVDKWDAEYYAKVNDDVYVNIDSLGATLATHLDKPRVYIGCMKSGDVFSEPGHKWYEPDWWKFGDKKLYFRHASGEM 283 (364)
Q Consensus 204 ~~wa~~~~~a~f~lKvDDDvfVnl~~L~~~L~~~~~~~~lyiG~~~~~~v~r~~~~Kwy~p~~w~~y~~~~Yp~y~~G~g 283 (364)
+..+.+....+|++.+|+|..+.++.|..++....... ..+|.......-......+..-.++..+.. ...+ ..+.+
T Consensus 64 ~n~g~~~a~~~~i~~~D~D~~~~~~~l~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~ 140 (221)
T cd02522 64 MNAGAAAARGDWLLFLHADTRLPPDWDAAIIETLRADG-AVAGAFRLRFDDPGPRLRLLELGANLRSRL-FGLP-YGDQG 140 (221)
T ss_pred HHHHHHhccCCEEEEEcCCCCCChhHHHHHHHHhhcCC-cEEEEEEeeecCCccchhhhhhcccceecc-cCCC-cCCce
Confidence 34444545589999999999999888888766554333 344442110000000000001111000000 1111 23568
Q ss_pred EeeCHHHHHHHHHhcccCCCCCcchHHHHHHHhcCCC
Q 017892 284 YVISRALAKFISINRSILRTYAHDDVSAGSWFLGLDV 320 (364)
Q Consensus 284 YvlS~dla~~I~~~~~~l~~~~~EDV~vG~~l~~l~V 320 (364)
.++++++...+---... +..||.-++.=+...|.
T Consensus 141 ~~~r~~~~~~~G~fd~~---~~~ED~d~~~r~~~~G~ 174 (221)
T cd02522 141 LFIRRELFEELGGFPEL---PLMEDVELVRRLRRRGR 174 (221)
T ss_pred EEEEHHHHHHhCCCCcc---ccccHHHHHHHHHhCCC
Confidence 89999988777533222 26899988766655543
No 48
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=65.74 E-value=99 Score=30.41 Aligned_cols=134 Identities=6% Similarity=-0.040 Sum_probs=69.2
Q ss_pred CeEEEEEeecCCCCCCcchhhhHHhhhhCCC-eeeeCCCCCCCCCchHHHHHHHHHHHhCCCccEEEEEcCeeeecHHHH
Q 017892 152 GIITRFVIGRSANRGDSLDQDIDSENKQTND-FFILDHHVEAPKEFPNKAKLFFAYAVDKWDAEYYAKVNDDVYVNIDSL 230 (364)
Q Consensus 152 ~i~v~FvvG~s~~~~~~~~~~I~~E~~~~~D-il~l~d~~Dsy~nLt~Kt~~~~~wa~~~~~a~f~lKvDDDvfVnl~~L 230 (364)
.+.+++|-..|.+. ..+.+++-.+++++ ++.+ ....++ .|. .++..+.++.+.+|++.+|+|.-.+++.+
T Consensus 38 ~~EIIvVDDgS~D~---T~~il~~~~~~~~~~v~~i-~~~~n~----G~~-~A~~~G~~~A~gd~vv~~DaD~q~~p~~i 108 (325)
T PRK10714 38 EYEILLIDDGSSDN---SAEMLVEAAQAPDSHIVAI-LLNRNY----GQH-SAIMAGFSHVTGDLIITLDADLQNPPEEI 108 (325)
T ss_pred CEEEEEEeCCCCCc---HHHHHHHHHhhcCCcEEEE-EeCCCC----CHH-HHHHHHHHhCCCCEEEEECCCCCCCHHHH
Confidence 46788887666542 22223322333444 3322 122221 121 12333444457899999999999999999
Q ss_pred HHHHhhcCCCCceEEEEeec--CcccccCCCccccCCccccCCCCCcCcCccCCeEeeCHHHHHHHHH
Q 017892 231 GATLATHLDKPRVYIGCMKS--GDVFSEPGHKWYEPDWWKFGDKKLYFRHASGEMYVISRALAKFISI 296 (364)
Q Consensus 231 ~~~L~~~~~~~~lyiG~~~~--~~v~r~~~~Kwy~p~~w~~y~~~~Yp~y~~G~gYvlS~dla~~I~~ 296 (364)
..+++......++..|.... .+++|.-.++.+.-....+ .+..++.+.+| .-++++++++.+..
T Consensus 109 ~~l~~~~~~~~DvV~~~r~~~~~~~~r~~~s~~~~~l~~~~-~g~~~~d~~~g-fr~~~r~~~~~l~~ 174 (325)
T PRK10714 109 PRLVAKADEGYDVVGTVRQNRQDSWFRKTASKMINRLIQRT-TGKAMGDYGCM-LRAYRRHIVDAMLH 174 (325)
T ss_pred HHHHHHHHhhCCEEEEEEcCCCCcHHHHHHHHHHHHHHHHH-cCCCCCCCCcC-eEEEcHHHHHHHHH
Confidence 98888764334454444321 2233222222211100011 13344444333 45899999999864
No 49
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=65.12 E-value=24 Score=31.97 Aligned_cols=121 Identities=13% Similarity=0.025 Sum_probs=62.9
Q ss_pred HHHHHHhCCCccEEEEEcCeeeecHHHHHHHHhhcCCCCceEEEEeecCcccccCCCcccc-----CCc--cc---cCC-
Q 017892 203 FFAYAVDKWDAEYYAKVNDDVYVNIDSLGATLATHLDKPRVYIGCMKSGDVFSEPGHKWYE-----PDW--WK---FGD- 271 (364)
Q Consensus 203 ~~~wa~~~~~a~f~lKvDDDvfVnl~~L~~~L~~~~~~~~lyiG~~~~~~v~r~~~~Kwy~-----p~~--w~---~y~- 271 (364)
.+..+.+....+|++.+|.|+.+.++.|...+... ..+. +|.+.......++...|.. +.. +. ...
T Consensus 78 a~n~g~~~a~~~~i~~~DaD~~~~~~~l~~~~~~~-~~~~--v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (232)
T cd06437 78 ALAEGMKVAKGEYVAIFDADFVPPPDFLQKTPPYF-ADPK--LGFVQTRWGHINANYSLLTRVQAMSLDYHFTIEQVARS 154 (232)
T ss_pred HHHHHHHhCCCCEEEEEcCCCCCChHHHHHhhhhh-cCCC--eEEEecceeeEcCCCchhhHhhhhhHHhhhhHhHhhHh
Confidence 35566665689999999999999999988855443 2233 2333211111111111210 000 00 000
Q ss_pred CCCcCcCccCCeEeeCHHHHHHHHHhcccCCCCCcchHHHHHHHhcCC--CeEecCCCcc
Q 017892 272 KKLYFRHASGEMYVISRALAKFISINRSILRTYAHDDVSAGSWFLGLD--VKYLNEGKFC 329 (364)
Q Consensus 272 ~~~Yp~y~~G~gYvlS~dla~~I~~~~~~l~~~~~EDV~vG~~l~~l~--V~~i~~~~f~ 329 (364)
.......+.|++-++.+++...+---.. ....||+.++.-+...| +.++.+....
T Consensus 155 ~~~~~~~~~g~~~~~rr~~~~~vgg~~~---~~~~ED~~l~~rl~~~G~~~~~~~~~~v~ 211 (232)
T cd06437 155 STGLFFNFNGTAGVWRKECIEDAGGWNH---DTLTEDLDLSYRAQLKGWKFVYLDDVVVP 211 (232)
T ss_pred hcCCeEEeccchhhhhHHHHHHhCCCCC---CcchhhHHHHHHHHHCCCeEEEeccceee
Confidence 0111112356666788888877632111 23479999987775444 4455444433
No 50
>PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ].
Probab=64.79 E-value=1.3e+02 Score=28.62 Aligned_cols=165 Identities=13% Similarity=0.073 Sum_probs=87.4
Q ss_pred CCCeEEEEEeecCCCCCCcchhhhHHhhhhCCCeeeeCCC-CCCCCCchHHHHHHHHHHHhCCCccEEEEEcCeeeecHH
Q 017892 150 EKGIITRFVIGRSANRGDSLDQDIDSENKQTNDFFILDHH-VEAPKEFPNKAKLFFAYAVDKWDAEYYAKVNDDVYVNID 228 (364)
Q Consensus 150 ~~~i~v~FvvG~s~~~~~~~~~~I~~E~~~~~Dil~l~d~-~Dsy~nLt~Kt~~~~~wa~~~~~a~f~lKvDDDvfVnl~ 228 (364)
...+.+++|-+.+.. ..+..|.+-.+.++-+..+... .....+.+ .+..-+++....+|++..|.|+.+.++
T Consensus 32 ~~~~eiIvvd~~s~~---~~~~~l~~~~~~~~~~~~i~~~~~~~~f~~a----~arN~g~~~A~~d~l~flD~D~i~~~~ 104 (281)
T PF10111_consen 32 DPDFEIIVVDDGSSD---EFDEELKKLCEKNGFIRYIRHEDNGEPFSRA----KARNIGAKYARGDYLIFLDADCIPSPD 104 (281)
T ss_pred CCCEEEEEEECCCch---hHHHHHHHHHhccCceEEEEcCCCCCCcCHH----HHHHHHHHHcCCCEEEEEcCCeeeCHH
Confidence 456677777665543 3345666666666655122111 11122322 233444444578999999999999999
Q ss_pred HHHHHHh---hcCC-CCceEEEE-eecCccc-----ccCCCccccCCccccCC--CCCc-CcCccCCeEeeCHHHHHHHH
Q 017892 229 SLGATLA---THLD-KPRVYIGC-MKSGDVF-----SEPGHKWYEPDWWKFGD--KKLY-FRHASGEMYVISRALAKFIS 295 (364)
Q Consensus 229 ~L~~~L~---~~~~-~~~lyiG~-~~~~~v~-----r~~~~Kwy~p~~w~~y~--~~~Y-p~y~~G~gYvlS~dla~~I~ 295 (364)
.|...+. .... ...++++- ....... ......|.....-.+.. .+.+ .....|++.+++++.-..|-
T Consensus 105 ~i~~~~~~~~~l~~~~~~~~~~p~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~i~r~~f~~iG 184 (281)
T PF10111_consen 105 FIEKLLNHVKKLDKNPNAFLVYPCLYLSEEGSEKFYSQFKNLWDHEFLESFISGKNSLWEFIAFASSCFLINREDFLEIG 184 (281)
T ss_pred HHHHHHHHHHHHhcCCCceEEEeeeeccchhhHHHhhcchhcchHHHHHHHhhccccccccccccceEEEEEHHHHHHhC
Confidence 9999988 3322 22333332 2111111 00000010000000111 1111 12345699999999988886
Q ss_pred HhcccCCCCCcchHHHHHHHhcCCCe
Q 017892 296 INRSILRTYAHDDVSAGSWFLGLDVK 321 (364)
Q Consensus 296 ~~~~~l~~~~~EDV~vG~~l~~l~V~ 321 (364)
--......+..||.=++.=+...+..
T Consensus 185 GfDE~f~G~G~ED~D~~~RL~~~~~~ 210 (281)
T PF10111_consen 185 GFDERFRGWGYEDIDFGYRLKKAGYK 210 (281)
T ss_pred CCCccccCCCcchHHHHHHHHHcCCc
Confidence 54455666789999888666555433
No 51
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=64.74 E-value=1.1e+02 Score=27.54 Aligned_cols=117 Identities=18% Similarity=0.196 Sum_probs=65.0
Q ss_pred HHHHHHhC--CCccEEEEEcCeeeecHHHHHHHHhhcCCCCceEEEEeecCcccccCCCccccCC-ccc---cC-C----
Q 017892 203 FFAYAVDK--WDAEYYAKVNDDVYVNIDSLGATLATHLDKPRVYIGCMKSGDVFSEPGHKWYEPD-WWK---FG-D---- 271 (364)
Q Consensus 203 ~~~wa~~~--~~a~f~lKvDDDvfVnl~~L~~~L~~~~~~~~lyiG~~~~~~v~r~~~~Kwy~p~-~w~---~y-~---- 271 (364)
.+.++.+. .+.+|++..|+|+.+.++.|..++.... .+. +|.+......++....++... +|. ++ .
T Consensus 73 a~n~g~~~a~~~~d~i~~lD~D~~~~~~~l~~l~~~~~-~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (236)
T cd06435 73 ALNYALERTAPDAEIIAVIDADYQVEPDWLKRLVPIFD-DPR--VGFVQAPQDYRDGEESLFKRMCYAEYKGFFDIGMVS 149 (236)
T ss_pred HHHHHHHhcCCCCCEEEEEcCCCCcCHHHHHHHHHHhc-CCC--eeEEecCccccCCCccHHHHHHhHHHHHHHHHHhcc
Confidence 46666663 3479999999999999999999887764 332 233221111111111111100 000 00 0
Q ss_pred -CCCcCcCccCCeEeeCHHHHHHHHHhcccCCCCCcchHHHHHHHhcCC--CeEecC
Q 017892 272 -KKLYFRHASGEMYVISRALAKFISINRSILRTYAHDDVSAGSWFLGLD--VKYLNE 325 (364)
Q Consensus 272 -~~~Yp~y~~G~gYvlS~dla~~I~~~~~~l~~~~~EDV~vG~~l~~l~--V~~i~~ 325 (364)
...--.++.|.+.++++++...+---.. .+..||+-++.=+...| +...++
T Consensus 150 ~~~~~~~~~~g~~~~~rr~~~~~iGgf~~---~~~~eD~dl~~r~~~~G~~~~~~~~ 203 (236)
T cd06435 150 RNERNAIIQHGTMCLIRRSALDDVGGWDE---WCITEDSELGLRMHEAGYIGVYVAQ 203 (236)
T ss_pred ccccCceEEecceEEEEHHHHHHhCCCCC---ccccchHHHHHHHHHCCcEEEEcch
Confidence 0000124678889999999998743221 23489999987665554 444443
No 52
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=61.61 E-value=1.3e+02 Score=27.53 Aligned_cols=115 Identities=9% Similarity=0.035 Sum_probs=61.4
Q ss_pred HHHHHHhCCCccEEEEEcCeeeecHHHHHHHHhhcC-CCCceEEEEeec--CcccccCCCcc---ccCCc--c--ccCCC
Q 017892 203 FFAYAVDKWDAEYYAKVNDDVYVNIDSLGATLATHL-DKPRVYIGCMKS--GDVFSEPGHKW---YEPDW--W--KFGDK 272 (364)
Q Consensus 203 ~~~wa~~~~~a~f~lKvDDDvfVnl~~L~~~L~~~~-~~~~lyiG~~~~--~~v~r~~~~Kw---y~p~~--w--~~y~~ 272 (364)
.+..+.+.-..+|++.+|+|..++++.|..++.... +...+.+|.... +.. ....| ..+.. + ....+
T Consensus 84 a~n~g~~~a~g~~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g~r~~~~~~~---~~~~~~r~~~~~~~~~~~~~~~~ 160 (243)
T PLN02726 84 AYIHGLKHASGDFVVIMDADLSHHPKYLPSFIKKQRETGADIVTGTRYVKGGGV---HGWDLRRKLTSRGANVLAQTLLW 160 (243)
T ss_pred HHHHHHHHcCCCEEEEEcCCCCCCHHHHHHHHHHHHhcCCcEEEEccccCCCCc---CCccHHHHHHHHHHHHHHHHHhC
Confidence 444555545689999999999999999888887653 344566665321 100 00001 01000 0 00001
Q ss_pred CCcCcCccCCeEeeCHHHHHHHHHhcccCCCCCcchHHHHHHHh--cCCCeEe
Q 017892 273 KLYFRHASGEMYVISRALAKFISINRSILRTYAHDDVSAGSWFL--GLDVKYL 323 (364)
Q Consensus 273 ~~Yp~y~~G~gYvlS~dla~~I~~~~~~l~~~~~EDV~vG~~l~--~l~V~~i 323 (364)
. .-....|++.+++++++..+...... ..| ..|+-+...+. +..+..+
T Consensus 161 ~-~~~d~~g~~~~~rr~~~~~i~~~~~~-~~~-~~~~el~~~~~~~g~~i~~v 210 (243)
T PLN02726 161 P-GVSDLTGSFRLYKRSALEDLVSSVVS-KGY-VFQMEIIVRASRKGYRIEEV 210 (243)
T ss_pred C-CCCcCCCcccceeHHHHHHHHhhccC-CCc-EEehHHHHHHHHcCCcEEEe
Confidence 1 11235788889999999998653222 122 23454554443 4444444
No 53
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=60.67 E-value=82 Score=24.87 Aligned_cols=35 Identities=17% Similarity=0.045 Sum_probs=26.0
Q ss_pred HHHHHHHhCCCccEEEEEcCeeeecHHHHHHHHhh
Q 017892 202 LFFAYAVDKWDAEYYAKVNDDVYVNIDSLGATLAT 236 (364)
Q Consensus 202 ~~~~wa~~~~~a~f~lKvDDDvfVnl~~L~~~L~~ 236 (364)
..+..+.+..+.+|++.+|+|..+.++.+...+..
T Consensus 67 ~~~~~~~~~~~~d~v~~~d~D~~~~~~~~~~~~~~ 101 (156)
T cd00761 67 AARNAGLKAARGEYILFLDADDLLLPDWLERLVAE 101 (156)
T ss_pred HHHHHHHHHhcCCEEEEECCCCccCccHHHHHHHH
Confidence 33444444447999999999999999888887443
No 54
>cd04190 Chitin_synth_C C-terminal domain of Chitin Synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin. Chitin synthase, also called UDP-N-acetyl-D-glucosamine:chitin 4-beta-N-acetylglucosaminyltransferase, catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of GlcNAc residues formed by covalent beta-1,4 linkages. Chitin is an important component of the cell wall of fungi and bacteria and it is synthesized on the cytoplasmic surface of the cell membrane by membrane bound chitin synthases. Studies with fungi have revealed that most of them contain more than one chitin synthase gene. At least five subclasses of chitin synthases have been identified.
Probab=59.30 E-value=16 Score=33.87 Aligned_cols=109 Identities=15% Similarity=0.106 Sum_probs=60.4
Q ss_pred CCccEEEEEcCeeeecHHHHHHHHhhcCCCCce--EEEEeec-C---ccccc-CCCccccCCc-cc-cCCCCCcCcCccC
Q 017892 211 WDAEYYAKVNDDVYVNIDSLGATLATHLDKPRV--YIGCMKS-G---DVFSE-PGHKWYEPDW-WK-FGDKKLYFRHASG 281 (364)
Q Consensus 211 ~~a~f~lKvDDDvfVnl~~L~~~L~~~~~~~~l--yiG~~~~-~---~v~r~-~~~Kwy~p~~-w~-~y~~~~Yp~y~~G 281 (364)
.+.+|++.+|.|+.+.++.|..++......+++ ..|.+.. + .++.. ..-.|....+ .. +...-.+...+.|
T Consensus 72 a~~e~i~~~DaD~~~~~~~l~~l~~~~~~~p~vg~v~g~~~~~~~~~~~~~~~q~~ey~~~~~~~~~~~s~~g~~~~~~G 151 (244)
T cd04190 72 DDPEFILLVDADTKFDPDSIVQLYKAMDKDPEIGGVCGEIHPMGKKQGPLVMYQVFEYAISHWLDKAFESVFGFVTCLPG 151 (244)
T ss_pred CCCCEEEEECCCCcCCHhHHHHHHHHHHhCCCEEEEEeeeEEcCCcchhHHHhHheehhhhhhhcccHHHcCCceEECCC
Confidence 478999999999999999988888766333432 2333221 1 01100 0000000000 00 0011235566789
Q ss_pred CeEeeCHHHHHHHHHhccc----------C-------CCCCcchHHHHHHHhcCC
Q 017892 282 EMYVISRALAKFISINRSI----------L-------RTYAHDDVSAGSWFLGLD 319 (364)
Q Consensus 282 ~gYvlS~dla~~I~~~~~~----------l-------~~~~~EDV~vG~~l~~l~ 319 (364)
+++++.+++...+...... + .....||..++..+...|
T Consensus 152 ~~~~~R~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ED~~l~~~l~~~G 206 (244)
T cd04190 152 CFSMYRIEALKGDNGGKGPLLDYAYLTNTVDSLHKKNNLDLGEDRILCTLLLKAG 206 (244)
T ss_pred ceEEEEehhhcCCccccccchhhccccCcccchHHHHHHhHhcccceeHHHhccC
Confidence 9999999988765322111 0 122479999988876554
No 55
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=58.24 E-value=93 Score=26.50 Aligned_cols=92 Identities=8% Similarity=-0.006 Sum_probs=52.0
Q ss_pred HHHHHHHhCCCccEEEEEcCeeeecHHHHHHHHhh-cCCCCceEEEEeec--C---c-ccccCCCccccCCccccCCCCC
Q 017892 202 LFFAYAVDKWDAEYYAKVNDDVYVNIDSLGATLAT-HLDKPRVYIGCMKS--G---D-VFSEPGHKWYEPDWWKFGDKKL 274 (364)
Q Consensus 202 ~~~~wa~~~~~a~f~lKvDDDvfVnl~~L~~~L~~-~~~~~~lyiG~~~~--~---~-v~r~~~~Kwy~p~~w~~y~~~~ 274 (364)
..+..+.+....+|++..|+|..+.++.|..++.. ..+...+..|.... + . ..+. ...+.....+... ...
T Consensus 69 ~a~n~g~~~a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~ 146 (185)
T cd04179 69 AAVRAGFKAARGDIVVTMDADLQHPPEDIPKLLEKLLEGGADVVIGSRFVRGGGAGMPLLRR-LGSRLFNFLIRLL-LGV 146 (185)
T ss_pred HHHHHHHHHhcCCEEEEEeCCCCCCHHHHHHHHHHHhccCCcEEEEEeecCCCcccchHHHH-HHHHHHHHHHHHH-cCC
Confidence 44445555445599999999999999999988886 44455566665321 1 1 0100 0000000000000 111
Q ss_pred cCcCccCCeEeeCHHHHHHHH
Q 017892 275 YFRHASGEMYVISRALAKFIS 295 (364)
Q Consensus 275 Yp~y~~G~gYvlS~dla~~I~ 295 (364)
-.....|+.++++++++..+-
T Consensus 147 ~~~~~~~~~~~~~r~~~~~i~ 167 (185)
T cd04179 147 RISDTQSGFRLFRREVLEALL 167 (185)
T ss_pred CCcCCCCceeeeHHHHHHHHH
Confidence 233356788899999999985
No 56
>TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming). Cellulose synthase catalyzes the beta-1,4 polymerization of glucose residues in the formation of cellulose. In bacteria, the substrate is UDP-glucose. The synthase consists of two subunits (or domains in the frequent cases where it is encoded as a single polypeptide), the catalytic domain modelled here and the regulatory domain (pfam03170). The regulatory domain binds the allosteric activator cyclic di-GMP. The protein is membrane-associated and probably assembles into multimers such that the individual cellulose strands can self-assemble into multi-strand fibrils.
Probab=55.48 E-value=2.5e+02 Score=30.89 Aligned_cols=133 Identities=17% Similarity=0.095 Sum_probs=73.4
Q ss_pred CchHHHHHHHHHHHhCCCccEEEEEcCeeeecHHHHHHHHhhcCCCCce-EEEEee---cCccc-ccCCCccccCCcc-c
Q 017892 195 EFPNKAKLFFAYAVDKWDAEYYAKVNDDVYVNIDSLGATLATHLDKPRV-YIGCMK---SGDVF-SEPGHKWYEPDWW-K 268 (364)
Q Consensus 195 nLt~Kt~~~~~wa~~~~~a~f~lKvDDDvfVnl~~L~~~L~~~~~~~~l-yiG~~~---~~~v~-r~~~~Kwy~p~~w-~ 268 (364)
|...|.- .++.+.+..+.+|++..|.|+.+.++.|...+......+++ .++... +..++ ++-......|.+. .
T Consensus 212 n~~~KAg-nLN~al~~a~gd~Il~lDAD~v~~pd~L~~~v~~f~~dp~v~~Vqtp~~f~~p~~~~~nl~~~~~~~~e~~~ 290 (713)
T TIGR03030 212 NVHAKAG-NINNALKHTDGELILIFDADHVPTRDFLQRTVGWFVEDPKLFLVQTPHFFVSPDPIERNLGTFRRMPNENEL 290 (713)
T ss_pred CCCCChH-HHHHHHHhcCCCEEEEECCCCCcChhHHHHHHHHHHhCCCEEEEeCCeeccCCCHHhhhhHHHHHhhhHHHH
Confidence 3345543 46777777788999999999999999988887765333333 122111 11111 1100000011000 0
Q ss_pred cC----CCC--CcCcCccCCeEeeCHHHHHHHHHhcccCCCCCcchHHHHHHHhcCCC--eEecCCCcccC
Q 017892 269 FG----DKK--LYFRHASGEMYVISRALAKFISINRSILRTYAHDDVSAGSWFLGLDV--KYLNEGKFCCS 331 (364)
Q Consensus 269 ~y----~~~--~Yp~y~~G~gYvlS~dla~~I~~~~~~l~~~~~EDV~vG~~l~~l~V--~~i~~~~f~~~ 331 (364)
|| ++. .-..++.|.+.++.+++...+---. ...-.||..++.-+...|. .+.++......
T Consensus 291 f~~~i~~g~~~~~~~~~~Gs~~~iRR~al~~iGGf~---~~~vtED~~l~~rL~~~G~~~~y~~~~~~~g~ 358 (713)
T TIGR03030 291 FYGLIQDGNDFWNAAFFCGSAAVLRREALDEIGGIA---GETVTEDAETALKLHRRGWNSAYLDRPLIAGL 358 (713)
T ss_pred HHHHHHHHHhhhCCeeecCceeEEEHHHHHHcCCCC---CCCcCcHHHHHHHHHHcCCeEEEecccccccc
Confidence 00 000 0124567999999999998774211 1223799999988866554 45555544433
No 57
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=51.31 E-value=1.4e+02 Score=26.36 Aligned_cols=89 Identities=9% Similarity=-0.015 Sum_probs=51.0
Q ss_pred CeEEEEEeecCCCCCCcchhhhHHhhhhCCCeeeeCCCCCCCCCchHHHHHHHHHHHhCCCccEEEEEcCeeeecHHHHH
Q 017892 152 GIITRFVIGRSANRGDSLDQDIDSENKQTNDFFILDHHVEAPKEFPNKAKLFFAYAVDKWDAEYYAKVNDDVYVNIDSLG 231 (364)
Q Consensus 152 ~i~v~FvvG~s~~~~~~~~~~I~~E~~~~~Dil~l~d~~Dsy~nLt~Kt~~~~~wa~~~~~a~f~lKvDDDvfVnl~~L~ 231 (364)
.+.++.|-+.|.+ .....+++..++++..+++-.... |. .+. ..+..+.+....+|++.+|+|....++.|.
T Consensus 30 ~~eiivvdd~S~D---~t~~~~~~~~~~~~~~i~~i~~~~---n~-G~~-~a~~~g~~~a~gd~i~~ld~D~~~~~~~l~ 101 (211)
T cd04188 30 SYEIIVVDDGSKD---GTAEVARKLARKNPALIRVLTLPK---NR-GKG-GAVRAGMLAARGDYILFADADLATPFEELE 101 (211)
T ss_pred CEEEEEEeCCCCC---chHHHHHHHHHhCCCcEEEEEccc---CC-CcH-HHHHHHHHHhcCCEEEEEeCCCCCCHHHHH
Confidence 4567666665543 233444444455555422101222 21 121 233334443456999999999999999999
Q ss_pred HHHhh-cCCCCceEEEEe
Q 017892 232 ATLAT-HLDKPRVYIGCM 248 (364)
Q Consensus 232 ~~L~~-~~~~~~lyiG~~ 248 (364)
.++.. ......+.+|..
T Consensus 102 ~l~~~~~~~~~~~v~g~r 119 (211)
T cd04188 102 KLEEALKTSGYDIAIGSR 119 (211)
T ss_pred HHHHHHhccCCcEEEEEe
Confidence 98887 344456677763
No 58
>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine . This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.
Probab=49.15 E-value=1.9e+02 Score=25.66 Aligned_cols=44 Identities=18% Similarity=0.315 Sum_probs=31.3
Q ss_pred HHHHHhCCCccEEEEEcCeeeecHHHHHHHHhhcCCCCceEEEE
Q 017892 204 FAYAVDKWDAEYYAKVNDDVYVNIDSLGATLATHLDKPRVYIGC 247 (364)
Q Consensus 204 ~~wa~~~~~a~f~lKvDDDvfVnl~~L~~~L~~~~~~~~lyiG~ 247 (364)
...+.+....+|++.+|+|..+.++.|...+......+...+|+
T Consensus 76 ~N~g~~~a~gd~i~~lD~D~~~~~~~l~~~~~~~~~~~~~~v~~ 119 (219)
T cd06913 76 KNQAIAQSSGRYLCFLDSDDVMMPQRIRLQYEAALQHPNSIIGC 119 (219)
T ss_pred HHHHHHhcCCCEEEEECCCccCChhHHHHHHHHHHhCCCcEEEE
Confidence 34455555789999999999999988877666554334445565
No 59
>COG4092 Predicted glycosyltransferase involved in capsule biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=44.01 E-value=86 Score=30.87 Aligned_cols=163 Identities=13% Similarity=0.102 Sum_probs=90.2
Q ss_pred cccCCCeEEEEEeecCCCCCCcchhhhHHhhhhCCCeeeeCCCC--CCCCCchHHHHHHHHHHHhCCCccEEEEEcCeee
Q 017892 147 RENEKGIITRFVIGRSANRGDSLDQDIDSENKQTNDFFILDHHV--EAPKEFPNKAKLFFAYAVDKWDAEYYAKVNDDVY 224 (364)
Q Consensus 147 Le~~~~i~v~FvvG~s~~~~~~~~~~I~~E~~~~~Dil~l~d~~--Dsy~nLt~Kt~~~~~wa~~~~~a~f~lKvDDDvf 224 (364)
.....++.+.|+-|.+ ..++.|..=.....-++.|. +. +.+..-+.-...+..|+.+.++..+++..|=|+|
T Consensus 33 fts~~~~~vi~~~~~~-----~~d~~i~~~i~~~~~~~yl~-~~s~~~F~s~~~c~n~ga~Ysh~~~~Sn~vlFlDvDc~ 106 (346)
T COG4092 33 FTSSDITMVICLRAHE-----VMDRLIRSYIDPMPRVLYLD-FGSPEPFASETICANNGADYSHEKCESNLVLFLDVDCF 106 (346)
T ss_pred ccccccEEEEEEecch-----hHHHHHHHHhccccceEEEe-cCCCccccchhhhhhccchhhhccccccEEEEEecccc
Confidence 3345677777777764 45677776666666666663 43 2333334445667888888889999999999999
Q ss_pred ecHHHHHHHHhhcC-------CCCceEEEE--ee--cCcccccCCC-cc----ccCCccccCCCCCcCcCccCCeEeeCH
Q 017892 225 VNIDSLGATLATHL-------DKPRVYIGC--MK--SGDVFSEPGH-KW----YEPDWWKFGDKKLYFRHASGEMYVISR 288 (364)
Q Consensus 225 Vnl~~L~~~L~~~~-------~~~~lyiG~--~~--~~~v~r~~~~-Kw----y~p~~w~~y~~~~Yp~y~~G~gYvlS~ 288 (364)
...++..+.|.-.. -...+..-- .. .+.+.-+-.+ +| .++.--.+..+..++.=..-+.+++.+
T Consensus 107 ~S~dnF~k~l~~~~ikk~~tnI~a~~vlPV~~LNk~~~~v~f~~~d~f~d~~i~es~~~~~~~~~~ff~~~~T~~~liN~ 186 (346)
T COG4092 107 GSSDNFAKMLSIATIKKMRTNIDAPLVLPVYHLNKADTQVFFDVEDMFLDAMIFESPLAEFRKEDNFFIAPYTNIFLINR 186 (346)
T ss_pred ccHHHHHHHHHHHHHHHHHhccCcceeeeeeecchhhhhHHHHHHHHhhhhHhhhhHHHHhCcccccccccccceEEEeh
Confidence 99999999884321 111111111 11 1112111111 11 011000011122332222345678888
Q ss_pred HHHHHHHHhcccCCCCCcchH-HHHHHH
Q 017892 289 ALAKFISINRSILRTYAHDDV-SAGSWF 315 (364)
Q Consensus 289 dla~~I~~~~~~l~~~~~EDV-~vG~~l 315 (364)
+.-....-......-+..||. ++....
T Consensus 187 ~~F~~tgGydE~F~GhG~EDfe~~~R~~ 214 (346)
T COG4092 187 RMFSLTGGYDERFRGHGSEDFEFLTRLG 214 (346)
T ss_pred hHHHHhcCCccccccCCchhHHHHHHHH
Confidence 876666655566777788886 444443
No 60
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=41.42 E-value=2.3e+02 Score=24.41 Aligned_cols=89 Identities=15% Similarity=0.079 Sum_probs=53.3
Q ss_pred HHHHHHHHh-CCCccEEEEEcCeeeecHHHHHHHHhhcCCCCceEEEEeecCcccccCCCccccC---CccccC----C-
Q 017892 201 KLFFAYAVD-KWDAEYYAKVNDDVYVNIDSLGATLATHLDKPRVYIGCMKSGDVFSEPGHKWYEP---DWWKFG----D- 271 (364)
Q Consensus 201 ~~~~~wa~~-~~~a~f~lKvDDDvfVnl~~L~~~L~~~~~~~~lyiG~~~~~~v~r~~~~Kwy~p---~~w~~y----~- 271 (364)
..+++++.+ ..+.+|++.+|.|+.+.++.|..++........+..|..... ++...|.-. .++.++ .
T Consensus 69 n~g~~~a~~~~~~~d~v~~~DaD~~~~p~~l~~l~~~~~~~~~~v~g~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 144 (183)
T cd06438 69 DFGFRHLLNLADDPDAVVVFDADNLVDPNALEELNARFAAGARVVQAYYNSK----NPDDSWITRLYAFAFLVFNRLRPL 144 (183)
T ss_pred HHHHHHHHhcCCCCCEEEEEcCCCCCChhHHHHHHHHHhhCCCeeEEEEeee----CCccCHHHHHHHHHHHHHHHHHHH
Confidence 344555542 246899999999999999888888877755555666654321 111122110 000000 0
Q ss_pred C---CCcCcCccCCeEeeCHHHHHH
Q 017892 272 K---KLYFRHASGEMYVISRALAKF 293 (364)
Q Consensus 272 ~---~~Yp~y~~G~gYvlS~dla~~ 293 (364)
+ -.-+.++.|.++++++++++.
T Consensus 145 ~~~~~~~~~~~~G~~~~~rr~~l~~ 169 (183)
T cd06438 145 GRSNLGLSCQLGGTGMCFPWAVLRQ 169 (183)
T ss_pred HHHHcCCCeeecCchhhhHHHHHHh
Confidence 0 122346789999999999988
No 61
>PF09258 Glyco_transf_64: Glycosyl transferase family 64 domain; InterPro: IPR015338 Members of this entry catalyse the transfer reaction of N-acetylglucosamine and N-acetylgalactosamine from the respective UDP-sugars to the non-reducing end of [glucuronic acid]beta 1-3[galactose]beta 1-O-naphthalenemethanol, an acceptor substrate analogue of the natural common linker of various glycosylaminoglycans. They are also required for the biosynthesis of heparan-sulphate []. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0031227 intrinsic to endoplasmic reticulum membrane; PDB: 1ON6_B 1OMZ_B 1OMX_B 1ON8_B.
Probab=32.11 E-value=50 Score=31.45 Aligned_cols=99 Identities=13% Similarity=0.273 Sum_probs=53.1
Q ss_pred CccEEEEEcCeeeecHHHHHHHHhhcCCCCceEEEEeecCcccccCCCcc-ccCCccccCCCCCcCcCccCCeEeeCHHH
Q 017892 212 DAEYYAKVNDDVYVNIDSLGATLATHLDKPRVYIGCMKSGDVFSEPGHKW-YEPDWWKFGDKKLYFRHASGEMYVISRAL 290 (364)
Q Consensus 212 ~a~f~lKvDDDvfVnl~~L~~~L~~~~~~~~lyiG~~~~~~v~r~~~~Kw-y~p~~w~~y~~~~Yp~y~~G~gYvlS~dl 290 (364)
..+-++-+|||+.++.+.|.-.....+..+.-.+|.....-......++| |.++| .+.|- ..-.++-++.+..
T Consensus 75 ~T~AVl~~DDDv~~~~~~l~faF~~W~~~pdrlVGf~~R~h~~~~~~~~~~Y~~~~-----~~~yS-mvLt~aaf~h~~y 148 (247)
T PF09258_consen 75 ETDAVLSLDDDVMLSCDELEFAFQVWREFPDRLVGFPPRSHSWDPSSGRWKYTSEW-----SNEYS-MVLTGAAFYHRYY 148 (247)
T ss_dssp -SSEEEEEETTEEE-HHHHHHHHHHHCCSTTSEEES-EEEEEEE-ETTEEEEE-SS-----S--BS-EE-TTEEEEETHH
T ss_pred CcceEEEecCCcccCHHHHHHHHHHHHhChhheeCCccceeecCCCccccccccCC-----CCcch-hhhhhhHhhcchH
Confidence 46889999999999999999888888776767788764221111134555 32222 11222 2334444555555
Q ss_pred HHHHHHhcc------cCCCCCcchHHHHHHHh
Q 017892 291 AKFISINRS------ILRTYAHDDVSAGSWFL 316 (364)
Q Consensus 291 a~~I~~~~~------~l~~~~~EDV~vG~~l~ 316 (364)
...-....+ .-...+=||+.+-.++.
T Consensus 149 l~~Y~~~~p~~~r~~Vd~~~NCEDI~mNflvs 180 (247)
T PF09258_consen 149 LELYTHWLPASIREYVDEHFNCEDIAMNFLVS 180 (247)
T ss_dssp HHHHHT-S-HHHHHHHHHHTS-HHHHHHHHHH
T ss_pred HHHHhcCcHHHHHHHHhccCCHHHHHHHHHHH
Confidence 442221100 11245789998876664
No 62
>PF03071 GNT-I: GNT-I family; InterPro: IPR004139 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GNT-I, GLCNAC-T I) 2.4.1.101 from EC transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide. This is an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus, and is probably distributed in all tissues. The catalytic domain is located at the C terminus []. These proteins are members of the glycosyl transferase family 13 (GH13 from CAZY); GO: 0003827 alpha-1,3-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity, 0006487 protein N-linked glycosylation, 0000139 Golgi membrane; PDB: 2APC_A 2AM4_A 1FO9_A 2AM3_A 1FOA_A 2AM5_A 1FO8_A.
Probab=32.10 E-value=2.7e+02 Score=29.05 Aligned_cols=90 Identities=17% Similarity=0.209 Sum_probs=42.7
Q ss_pred HHHHHHHHHh----CCCccEEEEEcCeeeecHHHHHHHHhhc---CCCCceEEEEeecCcccccCCCccccCCccccCCC
Q 017892 200 AKLFFAYAVD----KWDAEYYAKVNDDVYVNIDSLGATLATH---LDKPRVYIGCMKSGDVFSEPGHKWYEPDWWKFGDK 272 (364)
Q Consensus 200 t~~~~~wa~~----~~~a~f~lKvDDDvfVnl~~L~~~L~~~---~~~~~lyiG~~~~~~v~r~~~~Kwy~p~~w~~y~~ 272 (364)
.-.=++|+++ ..+++.++.+.||.-+-++=+.=+.... ...+.+++=.-.+.. +....+... .+.
T Consensus 175 IA~HYk~aL~~vF~~~~~~~vIIlEDDL~isPDFf~Yf~~~~~ll~~D~sl~ciSawNdn-----G~~~~~~~~---~~~ 246 (434)
T PF03071_consen 175 IARHYKWALSQVFNKFKYSSVIILEDDLEISPDFFEYFSATLPLLENDPSLWCISAWNDN-----GKEHFVDDS---RPS 246 (434)
T ss_dssp HHHHHHHHHHHHHHTS--SEEEEEETTEEE-TTHHHHHHHHHHHHHH-TTEEEEES--TT------BGGGS-TT----TT
T ss_pred HHHHHHHHHHHHHHhcCCceEEEEecCcccCccHHHHHHHHHHHHhcCCCeEEEEccccC-----CccccccCC---Ccc
Confidence 3444556655 3468899999999999886543332222 234556543322211 111111110 011
Q ss_pred CCc-CcCccCCeEeeCHHHHHHHHHh
Q 017892 273 KLY-FRHASGEMYVISRALAKFISIN 297 (364)
Q Consensus 273 ~~Y-p~y~~G~gYvlS~dla~~I~~~ 297 (364)
..| -.|.-|-|++|++++=..+...
T Consensus 247 ~lyRsdffpglGWml~r~~w~el~~~ 272 (434)
T PF03071_consen 247 LLYRSDFFPGLGWMLTRELWDELEPK 272 (434)
T ss_dssp -EEEESS---SSEEEEHHHHHHHGGG
T ss_pred ceEecccCCchHHHhhHHHHHhhccc
Confidence 111 1245689999999999876643
No 63
>PHA01631 hypothetical protein
Probab=30.00 E-value=1.3e+02 Score=27.40 Aligned_cols=91 Identities=13% Similarity=0.208 Sum_probs=53.2
Q ss_pred CCCeeeeCCCCCCCCCchHHHHHHHHHHHh---CCCccEEEEEcCeeeecHHHHHHHHhhcCCCCceEEEEeecCccccc
Q 017892 180 TNDFFILDHHVEAPKEFPNKAKLFFAYAVD---KWDAEYYAKVNDDVYVNIDSLGATLATHLDKPRVYIGCMKSGDVFSE 256 (364)
Q Consensus 180 ~~Dil~l~d~~Dsy~nLt~Kt~~~~~wa~~---~~~a~f~lKvDDDvfVnl~~L~~~L~~~~~~~~lyiG~~~~~~v~r~ 256 (364)
+.+|+....-+| ..-.....++..+++ .-+-+.++.+|.|++|+.-. .. .++..++.=|... +
T Consensus 39 ~~~Ii~~~t~~e---~Rr~RIAk~Ll~Iln~~s~i~DDi~~iIDSDV~ipn~~--~~----~~~~~v~t~CiPA----~- 104 (176)
T PHA01631 39 QEKIIWIMTNTE---IRWLRIAKQLLTIVNFAKNIEDDIIAIIDSDLIIPNLR--EI----IPNERVFTPCYWL----Y- 104 (176)
T ss_pred CCceEEecccch---hHHHHHHHHHHHHHHhhccCCccEEEEeccceEecCcc--cc----ccCCCccceeeee----e-
Confidence 566665421222 223333344445544 24568888999999998642 11 2333445444421 0
Q ss_pred CCCccccCCccccCCCCCcCcCccCCeEeeCHHHHHHHHH
Q 017892 257 PGHKWYEPDWWKFGDKKLYFRHASGEMYVISRALAKFISI 296 (364)
Q Consensus 257 ~~~Kwy~p~~w~~y~~~~Yp~y~~G~gYvlS~dla~~I~~ 296 (364)
.|| .+.+-+||.|--|++.+..+.++..
T Consensus 105 --~kp----------~~~v~~FC~sTNf~~pr~~l~~l~~ 132 (176)
T PHA01631 105 --YDW----------ANEIRPFCSGTNYIFRKSLLPYLEY 132 (176)
T ss_pred --ecC----------CCcEEEEEccccEEeeHHHhHHHHH
Confidence 111 2356689999999999999998875
No 64
>PLN03181 glycosyltransferase; Provisional
Probab=29.87 E-value=2.3e+02 Score=29.56 Aligned_cols=93 Identities=15% Similarity=0.106 Sum_probs=52.9
Q ss_pred HHHHHHHHhcCcchhhccccCCCeEEEEEeecCCC-----CCC-cchhhhHH---hhhhCCCeeeeCC-CCC-CCCCchH
Q 017892 130 RDAIRKAWMGTGAALKKRENEKGIITRFVIGRSAN-----RGD-SLDQDIDS---ENKQTNDFFILDH-HVE-APKEFPN 198 (364)
Q Consensus 130 R~aIR~TW~~~~~~lk~Le~~~~i~v~FvvG~s~~-----~~~-~~~~~I~~---E~~~~~Dil~l~d-~~D-sy~nLt~ 198 (364)
=|.-|+.|.+.... ......=+|+.|.|..+. .++ .+.+.+++ =+++||=-+.+.+ ..+ .+..-..
T Consensus 108 wD~kR~~Wl~~~p~---~~~~~~prVViVT~Sdp~~C~~~~gD~~LlriikNR~dYArrHGY~lf~~~a~Ld~~~p~~Wa 184 (453)
T PLN03181 108 WDEKRAEWLKLHPS---FAPGAEERVVMVTGSQPTPCKNPIGDHLLLRFFKNKVDYCRIHGYDIFYNNALLHPKMNSYWA 184 (453)
T ss_pred HHHHHHHHHHhCCC---CCCCCCCCEEEEECCCCCCCCCcccHHHHHHHHHHHHHHHHHhCCcEEEeccccCccCchhhh
Confidence 34556678765422 111222345555555421 122 22333332 1456663333222 222 5667788
Q ss_pred HHHHHHHHHHhCCCccEEEEEcCeeee
Q 017892 199 KAKLFFAYAVDKWDAEYYAKVNDDVYV 225 (364)
Q Consensus 199 Kt~~~~~wa~~~~~a~f~lKvDDDvfV 225 (364)
|...+-.-..++|+++|+.-+|-|+++
T Consensus 185 KipalRaAM~a~PeAEWfWWLDsDALI 211 (453)
T PLN03181 185 KLPVVRAAMLAHPEAEWIWWVDSDAVF 211 (453)
T ss_pred HHHHHHHHHHHCCCceEEEEecCCcee
Confidence 888888777889999999999999887
No 65
>PRK14716 bacteriophage N4 adsorption protein B; Provisional
Probab=29.69 E-value=7e+02 Score=26.44 Aligned_cols=107 Identities=10% Similarity=0.003 Sum_probs=58.7
Q ss_pred CccEEEEEcCeeeecHHHHHHHHhhcCCCCceEEEEeecCcccccCCCccccCCccc-cCC----------CCCcCcCcc
Q 017892 212 DAEYYAKVNDDVYVNIDSLGATLATHLDKPRVYIGCMKSGDVFSEPGHKWYEPDWWK-FGD----------KKLYFRHAS 280 (364)
Q Consensus 212 ~a~f~lKvDDDvfVnl~~L~~~L~~~~~~~~lyiG~~~~~~v~r~~~~Kwy~p~~w~-~y~----------~~~Yp~y~~ 280 (364)
++++++..|-|..+.++.|..+ ....++..+.-..+... ..+...|-...++. |+. .-.-+-.+.
T Consensus 158 ~~d~vvi~DAD~~v~Pd~Lr~~-~~~~~~~~~VQ~pv~~~---~~~~~~~~ag~y~~ef~~~~~~~l~~r~~LG~~~~~~ 233 (504)
T PRK14716 158 RFAIIVLHDAEDVIHPLELRLY-NYLLPRHDFVQLPVFSL---PRDWGEWVAGTYMDEFAESHLKDLPVREALGGLIPSA 233 (504)
T ss_pred CcCEEEEEcCCCCcCccHHHHH-HhhcCCCCEEecceecc---CCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCccccC
Confidence 4699999999999999998754 33333332211001110 01111110000000 000 001233468
Q ss_pred CCeEeeCHHHHHHHHHhc---ccCCCCCcchHHHHHHHhcCCCeE
Q 017892 281 GEMYVISRALAKFISINR---SILRTYAHDDVSAGSWFLGLDVKY 322 (364)
Q Consensus 281 G~gYvlS~dla~~I~~~~---~~l~~~~~EDV~vG~~l~~l~V~~ 322 (364)
|.+++++++++..+.... ..-...--||.-+|.-+...|.+.
T Consensus 234 Gtg~afRR~aLe~l~~~~GG~~fd~~sLTED~dLglRL~~~G~rv 278 (504)
T PRK14716 234 GVGTAFSRRALERLAAERGGQPFDSDSLTEDYDIGLRLKRAGFRQ 278 (504)
T ss_pred CeeEEeEHHHHHHHHhhcCCCCCCCCCcchHHHHHHHHHHCCCEE
Confidence 999999999999985422 122334589999998886555443
No 66
>PRK05454 glucosyltransferase MdoH; Provisional
Probab=28.25 E-value=6e+02 Score=28.14 Aligned_cols=199 Identities=13% Similarity=0.101 Sum_probs=99.2
Q ss_pred CCCceEEEEEeCCCCCHH-HHHHHHHHHhcCcchhhccccCCCeEEEEEeecCCCCCCcch--hhhHHhhhhCC---Cee
Q 017892 111 KKRPLVVIGILTRFGRKN-NRDAIRKAWMGTGAALKKRENEKGIITRFVIGRSANRGDSLD--QDIDSENKQTN---DFF 184 (364)
Q Consensus 111 ~~~~~llI~V~S~~~~~~-rR~aIR~TW~~~~~~lk~Le~~~~i~v~FvvG~s~~~~~~~~--~~I~~E~~~~~---Dil 184 (364)
+....+.|.|.+.-...+ -+..|+.++.+-.. ......+.+ |++..+.++.-... .++.+=.++++ .|.
T Consensus 121 ~~~~~VaVliP~yNEd~~~v~~~L~a~~~Sl~~----~~~~~~~e~-~vLdD~~d~~~~~~e~~~~~~L~~~~~~~~~i~ 195 (691)
T PRK05454 121 PPEARTAILMPIYNEDPARVFAGLRAMYESLAA----TGHGAHFDF-FILSDTRDPDIAAAEEAAWLELRAELGGEGRIF 195 (691)
T ss_pred CCCCceEEEEeCCCCChHHHHHHHHHHHHHHHh----cCCCCCEEE-EEEECCCChhHHHHHHHHHHHHHHhcCCCCcEE
Confidence 334556666665554443 34677777764221 001223444 88866554210000 01111123333 333
Q ss_pred eeCCCCCCCCCchHHHHHHHHHHHh-CCCccEEEEEcCeeeecHHHHHHHHhhcCCCCceEEEEeecCcccccCCCcc--
Q 017892 185 ILDHHVEAPKEFPNKAKLFFAYAVD-KWDAEYYAKVNDDVYVNIDSLGATLATHLDKPRVYIGCMKSGDVFSEPGHKW-- 261 (364)
Q Consensus 185 ~l~d~~Dsy~nLt~Kt~~~~~wa~~-~~~a~f~lKvDDDvfVnl~~L~~~L~~~~~~~~lyiG~~~~~~v~r~~~~Kw-- 261 (364)
.. ..-.|.-.|.-..-.+... ..+++|++-.|-|+.+..+.|..++.....+++ +|-+...+...+..+-+
T Consensus 196 yr----~R~~n~~~KaGNl~~~~~~~~~~~eyivvLDADs~m~~d~L~~lv~~m~~dP~--vGlVQt~~~~~n~~slfaR 269 (691)
T PRK05454 196 YR----RRRRNVGRKAGNIADFCRRWGGAYDYMVVLDADSLMSGDTLVRLVRLMEANPR--AGLIQTLPVAVGADTLFAR 269 (691)
T ss_pred EE----ECCcCCCccHHHHHHHHHhcCCCcCEEEEEcCCCCCCHHHHHHHHHHHhhCcC--EEEEeCCccCcCCCCHHHH
Confidence 22 2223444566655555443 246799999999999999999999876543444 35544222111111101
Q ss_pred --------ccC------CccccCCCCCcCcCccCCeEeeCHHHHHHHHH-----hccc-CCCCCcchHHHHHHHhcCC--
Q 017892 262 --------YEP------DWWKFGDKKLYFRHASGEMYVISRALAKFISI-----NRSI-LRTYAHDDVSAGSWFLGLD-- 319 (364)
Q Consensus 262 --------y~p------~~w~~y~~~~Yp~y~~G~gYvlS~dla~~I~~-----~~~~-l~~~~~EDV~vG~~l~~l~-- 319 (364)
|.+ .+|..+. -...|...|+.++....+-. ...- -...--||...|..+...|
T Consensus 270 ~qqf~~~~y~~~~~~G~~~w~~~~-----g~f~G~naIiR~~af~~~~glp~L~g~~p~~~~~LseD~~~a~~l~~~Gyr 344 (691)
T PRK05454 270 LQQFATRVYGPLFAAGLAWWQGGE-----GNYWGHNAIIRVKAFAEHCGLPPLPGRGPFGGHILSHDFVEAALMRRAGWG 344 (691)
T ss_pred HHHHHHHHHHHHHHhhhhhhccCc-----cccccceEEEEHHHHHHhcCCccccccCCCCCCcccHHHHHHHHHHHCCCE
Confidence 111 0111100 11246667888887665431 1111 1234578999999987665
Q ss_pred CeEecC
Q 017892 320 VKYLNE 325 (364)
Q Consensus 320 V~~i~~ 325 (364)
|.++++
T Consensus 345 V~~~pd 350 (691)
T PRK05454 345 VWLAPD 350 (691)
T ss_pred EEEcCc
Confidence 445544
No 67
>cd06436 GlcNAc-1-P_transferase N-acetyl-glucosamine transferase is involved in the synthesis of Poly-beta-1,6-N-acetyl-D-glucosamine. N-acetyl-glucosamine transferase is responsible for the synthesis of bacteria Poly-beta-1,6-N-acetyl-D-glucosamine (PGA). Poly-beta-1,6-N-acetyl-D-glucosamine is a homopolymer that serves as an adhesion for the maintenance of biofilm structural stability in diverse eubacteria. N-acetyl-glucosamine transferase is the product of gene pgaC. Genetic analysis indicated that all four genes of the pgaABCD locus were required for the PGA production, pgaC being a glycosyltransferase.
Probab=24.45 E-value=54 Score=28.96 Aligned_cols=77 Identities=10% Similarity=0.033 Sum_probs=43.6
Q ss_pred ccEEEEEcCeeeecHHHHHHHHhhcCCCCce--EEEEeecCcccccCCCccccC----Ccccc------CCCCCcCcCcc
Q 017892 213 AEYYAKVNDDVYVNIDSLGATLATHLDKPRV--YIGCMKSGDVFSEPGHKWYEP----DWWKF------GDKKLYFRHAS 280 (364)
Q Consensus 213 a~f~lKvDDDvfVnl~~L~~~L~~~~~~~~l--yiG~~~~~~v~r~~~~Kwy~p----~~w~~------y~~~~Yp~y~~ 280 (364)
.+|++.+|.|..+.++.|...+.... .+.+ ..|.+. ..+...+|+.. +++.. .....-.-+.+
T Consensus 90 ~d~v~~~DaD~~~~~~~l~~~~~~~~-~~~v~~v~~~~~----~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~ 164 (191)
T cd06436 90 RVIIAVIDADGRLDPNALEAVAPYFS-DPRVAGTQSRVR----MYNRHKNLLTILQDLEFFIIIAATQSLRALTGTVGLG 164 (191)
T ss_pred ccEEEEECCCCCcCHhHHHHHHHhhc-CCceEEEeeeEE----EecCCCCHHHHHHHHHHHHHHHHHHHHHHhcCcEEEC
Confidence 47999999999999999998655443 3332 222221 12223333211 11100 00000112357
Q ss_pred CCeEeeCHHHHHHH
Q 017892 281 GEMYVISRALAKFI 294 (364)
Q Consensus 281 G~gYvlS~dla~~I 294 (364)
|.+.++++.+++.+
T Consensus 165 G~~~~~r~~~l~~v 178 (191)
T cd06436 165 GNGQFMRLSALDGL 178 (191)
T ss_pred CeeEEEeHHHHHHh
Confidence 89999999999888
No 68
>PF04666 Glyco_transf_54: N-Acetylglucosaminyltransferase-IV (GnT-IV) conserved region; InterPro: IPR006759 The complex-type of oligosaccharides are synthesised through elongation by glycosyltransferases after trimming of the precursor oligosaccharides transferred to proteins in the endoplasmic reticulum. N-Acetylglucosaminyltransferases (GnTs) take part in the formation of branches in the biosynthesis of complex-type sugar chains. In vertebrates, six GnTs, designated as GnT-I to -VI, which catalyse the transfer of GlcNAc to the core mannose residues of Asn-linked sugar chains, have been identified. GnT-IV (2.4.1.145 from EC) catalyzes the transfer of GlcNAc from UDP-GlcNAc to the GlcNAc1-2Man1-3 arm of core oligosaccharide [Gn2(22)core oligosaccharide] and forms a GlcNAc1-4(GlcNAc1-2)Man1-3 structure on the core oligosaccharide (Gn3(2,4,2)core oligosaccharide). In some members the conserved region occupies all but the very N-terminal, where there is a signal sequence on all members. For other members the conserved region does not occupy the entire protein but is still to the N-terminal end of the protein [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0016020 membrane
Probab=23.99 E-value=3e+02 Score=27.13 Aligned_cols=23 Identities=26% Similarity=0.371 Sum_probs=17.8
Q ss_pred CccEEEEEcCeeeecHHHHHHHH
Q 017892 212 DAEYYAKVNDDVYVNIDSLGATL 234 (364)
Q Consensus 212 ~a~f~lKvDDDvfVnl~~L~~~L 234 (364)
.++||+-..||+.....-+..+.
T Consensus 169 ~~~YyL~LEDDVia~~~f~~~i~ 191 (297)
T PF04666_consen 169 LGDYYLQLEDDVIAAPGFLSRIK 191 (297)
T ss_pred cCCeEEEecCCeEechhHHHHHH
Confidence 57899999999999876444433
No 69
>PRK11498 bcsA cellulose synthase catalytic subunit; Provisional
Probab=21.81 E-value=2.5e+02 Score=31.86 Aligned_cols=123 Identities=15% Similarity=0.029 Sum_probs=68.6
Q ss_pred CchHHHHHHHHHHHhCCCccEEEEEcCeeeecHHHHHHHHhhcCCCCce-EEEEee---c-CcccccCCCcc-ccC-Ccc
Q 017892 195 EFPNKAKLFFAYAVDKWDAEYYAKVNDDVYVNIDSLGATLATHLDKPRV-YIGCMK---S-GDVFSEPGHKW-YEP-DWW 267 (364)
Q Consensus 195 nLt~Kt~~~~~wa~~~~~a~f~lKvDDDvfVnl~~L~~~L~~~~~~~~l-yiG~~~---~-~~v~r~~~~Kw-y~p-~~w 267 (364)
|...|.- .++.+.++.+.+|++..|.|..+..+-|...+......+++ .++... + ++..++- +.. ..| +.-
T Consensus 323 n~~gKAG-nLN~aL~~a~GEyIavlDAD~ip~pdfL~~~V~~f~~dP~VglVQtp~~f~n~dp~~rnl-~~~~~~~~e~~ 400 (852)
T PRK11498 323 HEHAKAG-NINNALKYAKGEFVAIFDCDHVPTRSFLQMTMGWFLKDKKLAMMQTPHHFFSPDPFERNL-GRFRKTPNEGT 400 (852)
T ss_pred CCcchHH-HHHHHHHhCCCCEEEEECCCCCCChHHHHHHHHHHHhCCCeEEEEcceeccCCchHHHhh-HHHhhcccchh
Confidence 3334443 56777777789999999999999999888877553222332 222111 1 1111110 000 001 100
Q ss_pred ccC----CCC--CcCcCccCCeEeeCHHHHHHHHHhcccCCCCCcchHHHHHHHhcCCCeE
Q 017892 268 KFG----DKK--LYFRHASGEMYVISRALAKFISINRSILRTYAHDDVSAGSWFLGLDVKY 322 (364)
Q Consensus 268 ~~y----~~~--~Yp~y~~G~gYvlS~dla~~I~~~~~~l~~~~~EDV~vG~~l~~l~V~~ 322 (364)
.|| ++. .-..++.|.+.++.+++...+---.. ....||.-++.-+...|-+.
T Consensus 401 ~fy~~iq~g~~~~~a~~~~Gs~aviRReaLeeVGGfd~---~titED~dlslRL~~~Gyrv 458 (852)
T PRK11498 401 LFYGLVQDGNDMWDATFFCGSCAVIRRKPLDEIGGIAV---ETVTEDAHTSLRLHRRGYTS 458 (852)
T ss_pred HHHHHHHhHHHhhcccccccceeeeEHHHHHHhcCCCC---CccCccHHHHHHHHHcCCEE
Confidence 011 000 01245789999999999998842211 12379999998887666443
No 70
>PHA02688 ORF059 IMV protein VP55; Provisional
Probab=21.35 E-value=3e+02 Score=27.53 Aligned_cols=96 Identities=15% Similarity=0.083 Sum_probs=47.6
Q ss_pred hHHHHHHHH--HHHh--CCCccEEEEEcCeeeecH-HHHHHHHhhcCCCCceEEEEeecCcccccCCCccccCCccccCC
Q 017892 197 PNKAKLFFA--YAVD--KWDAEYYAKVNDDVYVNI-DSLGATLATHLDKPRVYIGCMKSGDVFSEPGHKWYEPDWWKFGD 271 (364)
Q Consensus 197 t~Kt~~~~~--wa~~--~~~a~f~lKvDDDvfVnl-~~L~~~L~~~~~~~~lyiG~~~~~~v~r~~~~Kwy~p~~w~~y~ 271 (364)
..+.+..++ +..+ ..+.+|++-++||+.++. ..+...+..... ..+++=++.. .+.+...+-..+..-+ ..
T Consensus 97 ia~HlsLWes~~~~~~k~~~~~yivVlEDDnTi~~~~~~~~~I~~M~~-n~idilQLre--~~~~~~~~~~~~~~~~-~~ 172 (323)
T PHA02688 97 IARHLSLWESYANADIKDKEDEYIVVVEDDNTLRDITTLHPIIKAMKE-KNIDILQLRE--TLHNNNVRTLLNQEGN-PA 172 (323)
T ss_pred HHHHHHHHHhhccCCccccCCCeEEEEcCCCcccccHHHHHHHHHHHh-cCeEEEEeeh--hhhCCcccccccCCCC-cc
Confidence 344455555 3333 245899999999999983 333334444332 2355544321 0101111111111000 00
Q ss_pred CCCcCc--CccCCeEeeCHHHHHHHHH
Q 017892 272 KKLYFR--HASGEMYVISRALAKFISI 296 (364)
Q Consensus 272 ~~~Yp~--y~~G~gYvlS~dla~~I~~ 296 (364)
...|++ ..+=++|||+...|.+|+.
T Consensus 173 ~~~Y~ggydvSLsAYIIr~~~a~kl~~ 199 (323)
T PHA02688 173 LYSYTGGYDVSLSAYIIRVSTAKKLYD 199 (323)
T ss_pred eEEecCCcceeeEEEEEeHHHHHHHHH
Confidence 112322 1344799999999999986
No 71
>PF06072 Herpes_US9: Alphaherpesvirus tegument protein US9; InterPro: IPR009278 This family consists of several US9 and related proteins from the Alphaherpesviruses. The function of the US9 protein is unknown although in Bovine herpesvirus 5 Us9 is essential for the anterograde spread of the virus from the olfactory mucosa to the bulb [].; GO: 0019033 viral tegument
Probab=20.62 E-value=93 Score=23.45 Aligned_cols=15 Identities=20% Similarity=0.164 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHh
Q 017892 22 LLLSMFATFASIYVA 36 (364)
Q Consensus 22 ~~~~~~~~~~~~~~~ 36 (364)
+++|++|+.+|.+++
T Consensus 43 ~~~c~~S~~lG~~~~ 57 (60)
T PF06072_consen 43 VALCVLSGGLGALVA 57 (60)
T ss_pred HHHHHHHHHHHHHhh
Confidence 578888988888875
Done!