Your job contains 1 sequence.
>017893
MIFNRFSRQKPSLRSQPFTLLTCCLSATAANTTNNSSKLYDHYSFKPPPSLSPKPENPNP
TLNPNKNFKKKSKPQYRPPSSLDAPKKKYTDLPFDFRYSYTETNQNVRPIGLREPKYSPF
GPGRLEREWTGVCAPAADPKVKSAEEGAEDPNLEEKRILVRERIQGEPLTNAERKALVEK
CHRNRTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFG
KIIFRHGGTLVLYRGRNYNPKKRPVIPLMLWRPHEPVYPKLIKTTIEGLSIEETKEMRKR
GLAVPVLTKLAKNGYYGSLVPMVRDAFLVSELVRIDCQGLERSDYKKIGCKLRSWFRISF
LASL
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 017893
(364 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2126694 - symbol:AT4G31010 species:3702 "Arabi... 1211 3.5e-123 1
TAIR|locus:2160195 - symbol:AT5G54890 species:3702 "Arabi... 790 1.4e-78 1
TAIR|locus:2061604 - symbol:CAF1 species:3702 "Arabidopsi... 662 5.2e-65 1
TAIR|locus:2028100 - symbol:CAF2 species:3702 "Arabidopsi... 641 8.8e-63 1
TAIR|locus:2096662 - symbol:CFM2 "CRM family member 2" sp... 152 4.2e-09 2
TAIR|locus:2094997 - symbol:EMB1865 "embryo defective 186... 140 5.7e-06 2
TAIR|locus:2094558 - symbol:CFM3A "CRM family member 3A" ... 124 2.3e-05 2
TAIR|locus:2091458 - symbol:AT3G27550 species:3702 "Arabi... 127 3.6e-05 1
>TAIR|locus:2126694 [details] [associations]
symbol:AT4G31010 species:3702 "Arabidopsis thaliana"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
[GO:0000956 "nuclear-transcribed mRNA catabolic process"
evidence=RCA] [GO:0010048 "vernalization response" evidence=RCA]
[GO:0048573 "photoperiodism, flowering" evidence=RCA]
InterPro:IPR001890 Pfam:PF01985 PROSITE:PS51295 SMART:SM01103
GO:GO:0005739 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0008380
GO:GO:0006397 GO:GO:0003723 GO:GO:0030529 EMBL:AL022198
EMBL:AL161578 EMBL:AY042864 EMBL:AY072146 EMBL:AY096489
IPI:IPI00527272 PIR:B85363 RefSeq:NP_194830.2 UniGene:At.31782
UniGene:At.71202 ProteinModelPortal:Q8VYD9 SMR:Q8VYD9 PaxDb:Q8VYD9
PRIDE:Q8VYD9 EnsemblPlants:AT4G31010.1 GeneID:829228
KEGG:ath:AT4G31010 TAIR:At4g31010 eggNOG:NOG290479
HOGENOM:HOG000242611 InParanoid:Q8VYD9 OMA:MVRDAFL PhylomeDB:Q8VYD9
ProtClustDB:CLSN2686958 Genevestigator:Q8VYD9 Gene3D:3.30.110.60
SUPFAM:SSF75471 Uniprot:Q8VYD9
Length = 405
Score = 1211 (431.4 bits), Expect = 3.5e-123, P = 3.5e-123
Identities = 223/279 (79%), Positives = 249/279 (89%)
Query: 75 QYRPPSSLDAPKKKYTDLPFDFRYSYTETNQNVRPIGLREPKYSPFGPGRLEREWTGVCA 134
QYRPPSSL+ K ++DLPFDFR+SYTE+ NVRPIGLREPKYSPFGP RL+REWTGVCA
Sbjct: 66 QYRPPSSLEGVKTVHSDLPFDFRFSYTESCSNVRPIGLREPKYSPFGPDRLDREWTGVCA 125
Query: 135 PAADPKVKSAEEGAEDPNLEEKRILVRERIQGEPLTNAERKALVEKCHRNRTKRQINLGR 194
PA +PKV+S + G EDP LEEKR VRE+IQG LT AERK LVE C RN+TKRQ+NLGR
Sbjct: 126 PAVNPKVESVD-GVEDPKLEEKRRKVREKIQGASLTEAERKFLVELCQRNKTKRQVNLGR 184
Query: 195 DGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIFRHGGTLVLYR 254
DGLTHNMLND++NHWKHAEAVR+KCLGVPT+DMKNV F LEDKTFG+++ +H GTLVLYR
Sbjct: 185 DGLTHNMLNDVYNHWKHAEAVRVKCLGVPTLDMKNVIFHLEDKTFGQVVSKHSGTLVLYR 244
Query: 255 GRNYNPKKRPVIPLMLWRPHEPVYPKLIKTTIEGLSIEETKEMRKRGLAVPVLTKLAKNG 314
GRNY+PKKRP IPLMLW+PHEPVYP+LIKTTI+GLSI+ETK MRK+GLAVP LTKLAKNG
Sbjct: 245 GRNYDPKKRPKIPLMLWKPHEPVYPRLIKTTIDGLSIDETKAMRKKGLAVPALTKLAKNG 304
Query: 315 YYGSLVPMVRDAFLVSELVRIDCQGLERSDYKKIGCKLR 353
YYGSLVPMVRDAFLVSELVRIDC GLER DYKKIG KLR
Sbjct: 305 YYGSLVPMVRDAFLVSELVRIDCLGLERKDYKKIGAKLR 343
>TAIR|locus:2160195 [details] [associations]
symbol:AT5G54890 species:3702 "Arabidopsis thaliana"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR001890 Pfam:PF01985 PROSITE:PS51295 SMART:SM01103
GO:GO:0005739 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0008380
GO:GO:0006397 GO:GO:0003723 GO:GO:0030529 HOGENOM:HOG000242611
ProtClustDB:CLSN2686958 Gene3D:3.30.110.60 SUPFAM:SSF75471
EMBL:AB005232 EMBL:BP797158 IPI:IPI00517289 RefSeq:NP_200300.1
UniGene:At.43134 ProteinModelPortal:Q9FFU1 PRIDE:Q9FFU1
EnsemblPlants:AT5G54890.1 GeneID:835580 KEGG:ath:AT5G54890
TAIR:At5g54890 eggNOG:NOG298573 InParanoid:Q9FFU1 OMA:FRYSYSE
PhylomeDB:Q9FFU1 Genevestigator:Q9FFU1 Uniprot:Q9FFU1
Length = 358
Score = 790 (283.2 bits), Expect = 1.4e-78, P = 1.4e-78
Identities = 150/265 (56%), Positives = 192/265 (72%)
Query: 90 TDLPFDFRYSYTETNQNVRPIGLREPK-YSPFGPGRLEREWTGVCAPAADPKVKSAEEGA 148
+DLPFDFRYSY+ETN + PIG REPK +SPFGPGRL+R+WTG A A P++ ++
Sbjct: 75 SDLPFDFRYSYSETNPEIEPIGFREPKRFSPFGPGRLDRKWTGTTA-LASPEIDQSQW-- 131
Query: 149 EDPNLEEKRILVRERIQGEPLTNAERKALVEKCHRNRTKRQINLGRDGLTHNMLNDIHNH 208
+EE R R+ GE LT E L+E+ + RQINLG+ G+THNM++DIHNH
Sbjct: 132 ----VEE-----RARVLGETLTEDEVTELIERYRHSDCTRQINLGKGGVTHNMIDDIHNH 182
Query: 209 WKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIFRHGGTLVLYRGRNYNPKKRPVIPL 268
WK AEAVRIKCLGVPT+DM N+CF LE+K+ GKI++R+ LVLYRGRNY+PK RP+IPL
Sbjct: 183 WKKAEAVRIKCLGVPTLDMDNICFHLEEKSGGKIVYRNINILVLYRGRNYDPKSRPIIPL 242
Query: 269 MLWRPHEPVYPKLIKTTIEGLSIEETKEMRKRGLAVPVLTKLAKNGYYGSLVPMVRDAFL 328
MLW+PH P+YP+L+K +GL EETKEMR RGL P L KL +NG Y ++V VR+ F
Sbjct: 243 MLWKPHPPIYPRLVKNVADGLEFEETKEMRNRGLHSPALMKLTRNGVYVNVVGRVREEFE 302
Query: 329 VSELVRIDCQGLERSDYKKIGCKLR 353
E+VR+DC + SD K+IG KL+
Sbjct: 303 TEEIVRLDCTHVGMSDCKRIGVKLK 327
>TAIR|locus:2061604 [details] [associations]
symbol:CAF1 species:3702 "Arabidopsis thaliana"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0009507 "chloroplast"
evidence=ISM] [GO:0000373 "Group II intron splicing" evidence=IDA]
[GO:0006364 "rRNA processing" evidence=RCA] [GO:0006399 "tRNA
metabolic process" evidence=RCA] [GO:0009658 "chloroplast
organization" evidence=RCA] InterPro:IPR001890 Pfam:PF01985
PROSITE:PS51295 SMART:SM01103 GO:GO:0009570 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0006397 GO:GO:0003723 GO:GO:0030529
EMBL:AC006081 HOGENOM:HOG000242611 ProtClustDB:CLSN2686958
Gene3D:3.30.110.60 SUPFAM:SSF75471 EMBL:AY045882 EMBL:BT004337
IPI:IPI00534960 PIR:A84584 RefSeq:NP_565462.1 UniGene:At.13487
ProteinModelPortal:Q9SL79 SMR:Q9SL79 STRING:Q9SL79 PaxDb:Q9SL79
PRIDE:Q9SL79 ProMEX:Q9SL79 EnsemblPlants:AT2G20020.1 GeneID:816521
KEGG:ath:AT2G20020 TAIR:At2g20020 eggNOG:NOG320222
InParanoid:Q9SL79 OMA:RRRVCKI PhylomeDB:Q9SL79
Genevestigator:Q9SL79 GO:GO:0000373 Uniprot:Q9SL79
Length = 701
Score = 662 (238.1 bits), Expect = 5.2e-65, P = 5.2e-65
Identities = 137/279 (49%), Positives = 179/279 (64%)
Query: 93 PFDFRYSYTETNQNVRPIGLREPKYSPFGPGRLEREWTGVCA-----------------P 135
PF+F+YSYTET + V+P+ LREP Y+PFGP + R WTG P
Sbjct: 150 PFEFKYSYTETPK-VKPLKLREPAYAPFGPTTMGRPWTGRAPLPQSQKTPREFDSFRLPP 208
Query: 136 AADPKVKSAEE-GAEDPNLEEKRILVRERIQGEPLTNAERKALVEKCHRNRTKRQINLGR 194
+K ++ G P + + + +E I GEPLT E + LV C + T RQ+N+GR
Sbjct: 209 VGKKGLKPVQKPGPFRPGVGPRYVYSKEEILGEPLTKEEVRELVTSCLK--TTRQLNMGR 266
Query: 195 DGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIFRHGGTLVLYR 254
DGLTHNMLN+IH+ WK +IKC GV TVDM NVC QLE+K GK+I+R GG L L+R
Sbjct: 267 DGLTHNMLNNIHDLWKRRRVCKIKCKGVCTVDMDNVCEQLEEKIGGKVIYRRGGVLFLFR 326
Query: 255 GRNYNPKKRPVIPLMLWRPHEPVYPKLIKTTIEGLSIEETKEMRKRGLAVPVLTKLAKNG 314
GRNYN + RP PLMLW+P PVYP+LI+ EGL+ +E MR++G + + KL KNG
Sbjct: 327 GRNYNHRTRPRFPLMLWKPVAPVYPRLIQQVPEGLTRQEATNMRRKGRELMPICKLGKNG 386
Query: 315 YYGSLVPMVRDAFLVSELVRIDCQGLERSDYKKIGCKLR 353
Y LV V++AF V ELVRIDCQG++ SD++KIG KL+
Sbjct: 387 VYCDLVKNVKEAFEVCELVRIDCQGMKGSDFRKIGAKLK 425
>TAIR|locus:2028100 [details] [associations]
symbol:CAF2 species:3702 "Arabidopsis thaliana"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0009507 "chloroplast"
evidence=ISM] [GO:0000373 "Group II intron splicing" evidence=IDA]
InterPro:IPR001890 Pfam:PF01985 PROSITE:PS51295 SMART:SM01103
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0009570 GO:GO:0006397
GO:GO:0003723 GO:GO:0030529 EMBL:AC007945 ProtClustDB:CLSN2686958
Gene3D:3.30.110.60 SUPFAM:SSF75471 GO:GO:0000373 EMBL:AC005292
EMBL:AY062732 EMBL:AY114649 IPI:IPI00545122 RefSeq:NP_173754.2
UniGene:At.26886 ProteinModelPortal:Q9LDA9 SMR:Q9LDA9 STRING:Q9LDA9
PRIDE:Q9LDA9 EnsemblPlants:AT1G23400.1 GeneID:838948
KEGG:ath:AT1G23400 TAIR:At1g23400 eggNOG:NOG328950
HOGENOM:HOG000237818 InParanoid:Q9LDA9 OMA:RRQEICK PhylomeDB:Q9LDA9
Genevestigator:Q9LDA9 Uniprot:Q9LDA9
Length = 564
Score = 641 (230.7 bits), Expect = 8.8e-63, P = 8.8e-63
Identities = 139/279 (49%), Positives = 177/279 (63%)
Query: 93 PFDFRYSYTETNQNVRPIGLREPKYSPFGPGRLEREWTGVCA--------PAAD-----P 139
PF+F++SY+ET + V+P+G+REP + PF P + R WTG P D P
Sbjct: 110 PFEFQFSYSETPK-VKPVGIREPAFMPFAPPTMPRPWTGKAPLKKSKKKIPLFDSFNPPP 168
Query: 140 KVKSAEEGAEDPN-LE----EKRILVRERIQGEPLTNAERKALVEKCHRNRTKRQINLGR 194
KS + E P L K + RE + GEPL E+ L+ K H + RQ+NLGR
Sbjct: 169 AGKSGVKYVEMPGPLPFGRYPKEGMNREEVLGEPLKRWEKGMLI-KPHMH-DNRQVNLGR 226
Query: 195 DGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIFRHGGTLVLYR 254
DG THNML IH+HWK +++C GVPTVDM NVC LE+KT G+II R GG + L+R
Sbjct: 227 DGFTHNMLELIHSHWKRRRVCKVRCKGVPTVDMNNVCRVLEEKTGGEIIHRVGGVVYLFR 286
Query: 255 GRNYNPKKRPVIPLMLWRPHEPVYPKLIKTTIEGLSIEETKEMRKRGLAVPVLTKLAKNG 314
GRNYN + RP PLMLW+P PVYPKLI+ EGL+ EE E R +G ++ + KL+KNG
Sbjct: 287 GRNYNYRTRPQYPLMLWKPAAPVYPKLIQEVPEGLTKEEAHEFRVKGKSLRPICKLSKNG 346
Query: 315 YYGSLVPMVRDAFLVSELVRIDCQGLERSDYKKIGCKLR 353
Y SLV VRDAF +S LV++DC GLE SDYKKIG KL+
Sbjct: 347 VYVSLVKDVRDAFELSSLVKVDCPGLEPSDYKKIGAKLK 385
>TAIR|locus:2096662 [details] [associations]
symbol:CFM2 "CRM family member 2" species:3702
"Arabidopsis thaliana" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0009507 "chloroplast" evidence=ISM;RCA] [GO:0000372 "Group I
intron splicing" evidence=IMP] [GO:0000373 "Group II intron
splicing" evidence=IMP] InterPro:IPR001890 Pfam:PF01985
PROSITE:PS51295 SMART:SM01103 EMBL:CP002686 GO:GO:0003723
Gene3D:3.30.110.60 SUPFAM:SSF75471 GO:GO:0000373 GO:GO:0000372
EMBL:AY136347 EMBL:BT010594 IPI:IPI00518423 RefSeq:NP_186786.2
UniGene:At.28082 ProteinModelPortal:Q8L7C2 SMR:Q8L7C2 IntAct:Q8L7C2
STRING:Q8L7C2 PaxDb:Q8L7C2 PRIDE:Q8L7C2 EnsemblPlants:AT3G01370.1
GeneID:821288 KEGG:ath:AT3G01370 TAIR:At3g01370 eggNOG:NOG300241
InParanoid:Q8L7C2 OMA:ASMIKLW PhylomeDB:Q8L7C2
ProtClustDB:CLSN2690653 ArrayExpress:Q8L7C2 Genevestigator:Q8L7C2
Uniprot:Q8L7C2
Length = 1011
Score = 152 (58.6 bits), Expect = 4.2e-09, Sum P(2) = 4.2e-09
Identities = 28/74 (37%), Positives = 45/74 (60%)
Query: 185 RTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIF 244
R +++ +G+ G+T ++N IH W+ E V+I C + ++MK LE KT G +I+
Sbjct: 180 RLTKKLKIGKAGITEGIVNGIHERWRTTEVVKIFCEDISRMNMKRTHDVLETKTGGLVIW 239
Query: 245 RHGGTLVLYRGRNY 258
R G ++LYRG NY
Sbjct: 240 RSGSKILLYRGVNY 253
Score = 59 (25.8 bits), Expect = 4.2e-09, Sum P(2) = 4.2e-09
Identities = 16/59 (27%), Positives = 28/59 (47%)
Query: 279 PKLIKTTIEGLSIEETKEMRKRGLAVPVLTKLAKNGYYGSLVPMVRDAFLVSELVRIDC 337
P+L EG++ +E +RK GL + L + G + + + + ELV+I C
Sbjct: 569 PQLSDIDKEGITNDEKYMLRKIGLKMKPFLLLGRRGVFDGTIENMHLHWKYRELVKIIC 627
>TAIR|locus:2094997 [details] [associations]
symbol:EMB1865 "embryo defective 1865" species:3702
"Arabidopsis thaliana" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009793 "embryo
development ending in seed dormancy" evidence=NAS] [GO:0009737
"response to abscisic acid stimulus" evidence=IDA] [GO:0006655
"phosphatidylglycerol biosynthetic process" evidence=RCA]
[GO:0009902 "chloroplast relocation" evidence=RCA] [GO:0010027
"thylakoid membrane organization" evidence=RCA] [GO:0016117
"carotenoid biosynthetic process" evidence=RCA] [GO:0019288
"isopentenyl diphosphate biosynthetic process,
mevalonate-independent pathway" evidence=RCA] [GO:0034660 "ncRNA
metabolic process" evidence=RCA] InterPro:IPR001890 Pfam:PF01985
PROSITE:PS51295 SMART:SM01103 GO:GO:0009737 GO:GO:0009507
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0003723 EMBL:AB026658
Gene3D:3.30.110.60 SUPFAM:SSF75471 HOGENOM:HOG000241574
EMBL:AY063908 IPI:IPI00520842 RefSeq:NP_188468.1 UniGene:At.20890
ProteinModelPortal:Q9LS51 SMR:Q9LS51 STRING:Q9LS51 PaxDb:Q9LS51
PRIDE:Q9LS51 EnsemblPlants:AT3G18390.1 GeneID:821368
KEGG:ath:AT3G18390 TAIR:At3g18390 eggNOG:NOG326934
InParanoid:Q9LS51 OMA:DMKTAHE PhylomeDB:Q9LS51
ProtClustDB:CLSN2684381 ArrayExpress:Q9LS51 Genevestigator:Q9LS51
Uniprot:Q9LS51
Length = 848
Score = 140 (54.3 bits), Expect = 5.7e-06, Sum P(2) = 5.7e-06
Identities = 45/147 (30%), Positives = 73/147 (49%)
Query: 139 PKVKSAEEGAEDPNLEEKRILVRERIQGEPLTNAERKALVEKCHRNRTKR-------QIN 191
P K+ EE A + + E + V ++ + + AE VE R +R +IN
Sbjct: 206 PWEKNEEEQAAERVVGEGGVAVMQKRRARAPSLAE--LTVEDSELRRLRRDGMYLRVRIN 263
Query: 192 LGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIFRHGGTLV 251
+ + GLT ++ I++ W+ E VR+K V DMK +E +T G +I+R G +V
Sbjct: 264 IPKAGLTQAVMEKIYDTWRKEELVRLKFHEVLARDMKTAHEIVERRTGGMVIWRAGSVMV 323
Query: 252 LYRGRNYNPKKRPVIPLMLWRPHEPVY 278
+YRG +Y K PVI + P E ++
Sbjct: 324 VYRGLDY--KGPPVISNQMAGPKETLF 348
Score = 40 (19.1 bits), Expect = 5.7e-06, Sum P(2) = 5.7e-06
Identities = 6/18 (33%), Positives = 14/18 (77%)
Query: 341 ERSDYKKIGCKLRSWFRI 358
ER+ ++K+G K++++ I
Sbjct: 657 ERAMFRKVGLKMKAYLPI 674
Score = 38 (18.4 bits), Expect = 9.2e-06, Sum P(2) = 9.2e-06
Identities = 12/49 (24%), Positives = 22/49 (44%)
Query: 287 EGLSIEETKEMRKRGLAVPVLTKLAKNGYYGSLVPMVRDAFLVSELVRI 335
E +S EE RK GL + + G + ++ + + ELV++
Sbjct: 651 EVISEEERAMFRKVGLKMKAYLPIGIRGVFDGVIENMHLHWKHRELVKL 699
>TAIR|locus:2094558 [details] [associations]
symbol:CFM3A "CRM family member 3A" species:3702
"Arabidopsis thaliana" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0000373 "Group II
intron splicing" evidence=IMP] [GO:0048316 "seed development"
evidence=IGI] InterPro:IPR001890 Pfam:PF01985 PROSITE:PS51295
SMART:SM01103 GO:GO:0009507 EMBL:CP002686 GO:GO:0003723
GO:GO:0048316 Gene3D:3.30.110.60 SUPFAM:SSF75471 GO:GO:0000373
IPI:IPI00537962 RefSeq:NP_188947.2 UniGene:At.6125 UniGene:At.71222
ProteinModelPortal:F4J2U9 SMR:F4J2U9 PRIDE:F4J2U9
EnsemblPlants:AT3G23070.1 GeneID:821881 KEGG:ath:AT3G23070
OMA:VEILRHE Uniprot:F4J2U9
Length = 881
Score = 124 (48.7 bits), Expect = 2.3e-05, Sum P(2) = 2.3e-05
Identities = 32/90 (35%), Positives = 49/90 (54%)
Query: 169 LTNAERKALVEKCHRNRTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMK 228
L +E + L R +K +I G G+T ++ I WK AE VR+K G ++M+
Sbjct: 221 LPESELRRLRNLTFRTASKMRIRGG--GVTQVAVDAIKEKWKSAEIVRLKIEGASALNMR 278
Query: 229 NVCFQLEDKTFGKIIFRHGGTLVLYRGRNY 258
+ LE KT G +I+R G ++ LYRG +Y
Sbjct: 279 KMHEILEKKTGGLVIWRSGTSISLYRGVSY 308
Score = 52 (23.4 bits), Expect = 2.3e-05, Sum P(2) = 2.3e-05
Identities = 17/68 (25%), Positives = 28/68 (41%)
Query: 287 EGLSIEETKEMRKRGLAVPVLTKLAKNGYYGSLVPMVRDAFLVSELVRIDCQGLERSDYK 346
E ++ EE RK GL + L + G + V + + ELV+I + K
Sbjct: 636 ESITDEERFMFRKLGLKMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKAKTFDGVK 695
Query: 347 KIGCKLRS 354
K+ L +
Sbjct: 696 KVALALEA 703
>TAIR|locus:2091458 [details] [associations]
symbol:AT3G27550 species:3702 "Arabidopsis thaliana"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0009507 "chloroplast"
evidence=ISM] InterPro:IPR001890 Pfam:PF01985 PROSITE:PS51295
SMART:SM01103 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0003723
Gene3D:3.30.110.60 SUPFAM:SSF75471 EMBL:AB025626 IPI:IPI00525575
RefSeq:NP_189392.1 UniGene:At.37034 ProteinModelPortal:Q9LT57
SMR:Q9LT57 EnsemblPlants:AT3G27550.1 GeneID:822377
KEGG:ath:AT3G27550 TAIR:At3g27550 eggNOG:NOG248894
HOGENOM:HOG000241218 InParanoid:Q9LT57 OMA:RMRKESG PhylomeDB:Q9LT57
ProtClustDB:CLSN2685015 Genevestigator:Q9LT57 Uniprot:Q9LT57
Length = 491
Score = 127 (49.8 bits), Expect = 3.6e-05, P = 3.6e-05
Identities = 30/122 (24%), Positives = 64/122 (52%)
Query: 185 RTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIF 244
+ K + +G G+ ++ ++H HWK E V++ C P +K + + + G +I
Sbjct: 106 KNKNYVPVGVRGVFGGVVQNMHMHWKFHETVQVCCDNFPKEKIKEMASMIARLSGGVVIN 165
Query: 245 RHG-GTLVLYRGRNYNPKKRPVIPLMLWRPHEPVYPKLIKTTIEG--LSIEETKE-MRKR 300
H T++++RGRNY K +IP+ + ++ + +E L+I++T++ +R+
Sbjct: 166 IHNVKTIIMFRGRNYRQPKN-LIPVNTLTKRKALFKARFEQALESQKLNIKKTEQQLRRM 224
Query: 301 GL 302
G+
Sbjct: 225 GV 226
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.321 0.139 0.426 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 364 318 0.00083 116 3 11 22 0.38 34
33 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 8
No. of states in DFA: 613 (65 KB)
Total size of DFA: 238 KB (2130 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 25.60u 0.11s 25.71t Elapsed: 00:00:01
Total cpu time: 25.60u 0.11s 25.71t Elapsed: 00:00:01
Start: Fri May 10 04:03:36 2013 End: Fri May 10 04:03:37 2013