BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017893
(364 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|317106625|dbj|BAJ53131.1| JHL05D22.2 [Jatropha curcas]
Length = 415
Score = 550 bits (1416), Expect = e-154, Method: Compositional matrix adjust.
Identities = 272/356 (76%), Positives = 305/356 (85%), Gaps = 14/356 (3%)
Query: 2 IFNRFSRQKPSLRSQPFTLLTCCLSATAANTTNNSSKLYDHYSFKPPPSLSPK-PENPNP 60
+ R SRQKP P + L L A ++ + SSKL+DHY+F+PPPSLSP+ P+NPNP
Sbjct: 3 LLARLSRQKPP----PPSSLCLTLLARHLSSASTSSKLHDHYAFRPPPSLSPQEPDNPNP 58
Query: 61 TLNPNKNFKKKSKPQYRPPSSLDAPKKK--YTDLPFDFRYSYTETNQNVRPIGLREPKYS 118
T +KK KP YRPPS+LD KK ++DLPFDFRYSYTE++Q+VRPIGLREPKYS
Sbjct: 59 TT------RKKQKPLYRPPSTLDRTGKKPTHSDLPFDFRYSYTESSQSVRPIGLREPKYS 112
Query: 119 PFGPGRLEREWTGVCAPAADPKVKSAEEGAEDPNLEEKRILVRERIQGEPLTNAERKALV 178
PFGP RL+R WTGVCAPA DPKVKS + G +DPNLEEKR L+RE+IQG+PLTNAERK LV
Sbjct: 113 PFGPDRLDRSWTGVCAPAVDPKVKSLD-GTDDPNLEEKRKLMREKIQGDPLTNAERKILV 171
Query: 179 EKCHRNRTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKT 238
+C RN+TKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVC QLEDKT
Sbjct: 172 AQCQRNKTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCSQLEDKT 231
Query: 239 FGKIIFRHGGTLVLYRGRNYNPKKRPVIPLMLWRPHEPVYPKLIKTTIEGLSIEETKEMR 298
FGKII RH G+LVLYRGRNYNPKKRPVIPLM+WRPHEP+YP+LIKTTI+GLSI+ETKEMR
Sbjct: 232 FGKIIHRHCGSLVLYRGRNYNPKKRPVIPLMMWRPHEPIYPRLIKTTIDGLSIDETKEMR 291
Query: 299 KRGLAVPVLTKLAKNGYYGSLVPMVRDAFLVSELVRIDCQGLERSDYKKIGCKLRS 354
KRGLAVP LTKLAKNGYY SLVPMVRDAFL +ELVRIDCQGLE+SDYKKIGCKLR
Sbjct: 292 KRGLAVPALTKLAKNGYYASLVPMVRDAFLTNELVRIDCQGLEKSDYKKIGCKLRD 347
>gi|255541412|ref|XP_002511770.1| conserved hypothetical protein [Ricinus communis]
gi|223548950|gb|EEF50439.1| conserved hypothetical protein [Ricinus communis]
Length = 411
Score = 520 bits (1338), Expect = e-145, Method: Compositional matrix adjust.
Identities = 268/357 (75%), Positives = 300/357 (84%), Gaps = 19/357 (5%)
Query: 1 MIFNRFSRQKPSLRSQPF-TLLTCCLSATAANTTNNSSKLYDHYSFKPPPSLSPKPENPN 59
++ NR SR+KP P+ TLL+ LS+ +A SSKL+D YSF PPPSLSP+
Sbjct: 2 LLLNRLSREKP-----PYPTLLSRYLSSASA-----SSKLHDQYSFMPPPSLSPQNHQ-- 49
Query: 60 PTLNPNKNFKKKSKPQYRPPSSLDAPKKK--YTDLPFDFRYSYTETNQNVRPIGLREPKY 117
NPN KKK KP YRPPSSLD KK ++DLPFDFRYSYTE++Q+VRPIGLREPKY
Sbjct: 50 ---NPNSTPKKKRKPLYRPPSSLDRTGKKPTHSDLPFDFRYSYTESSQSVRPIGLREPKY 106
Query: 118 SPFGPGRLEREWTGVCAPAADPKVKSAEEGAEDPNLEEKRILVRERIQGEPLTNAERKAL 177
SPFGP RL+R WTGVCAP +PK+K + G+E+PNLEEKR RE+IQG+PLTNAERK L
Sbjct: 107 SPFGPDRLDRAWTGVCAPVVEPKLKFVD-GSENPNLEEKRRWWREQIQGQPLTNAERKIL 165
Query: 178 VEKCHRNRTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDK 237
VE C R++TK+QINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVC QLEDK
Sbjct: 166 VESCQRHKTKKQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCTQLEDK 225
Query: 238 TFGKIIFRHGGTLVLYRGRNYNPKKRPVIPLMLWRPHEPVYPKLIKTTIEGLSIEETKEM 297
TFGKII RH G LVLYRGRNY+PKKRPVIPLM+WRPHEP+YPKLIKTTIEGLSIEETKEM
Sbjct: 226 TFGKIIHRHCGLLVLYRGRNYHPKKRPVIPLMMWRPHEPIYPKLIKTTIEGLSIEETKEM 285
Query: 298 RKRGLAVPVLTKLAKNGYYGSLVPMVRDAFLVSELVRIDCQGLERSDYKKIGCKLRS 354
RK+GLA+P LTKLAKNGYY SLVPMVRDAFLV+ELVRIDCQGL +SDYKKIGCKLR
Sbjct: 286 RKKGLALPALTKLAKNGYYASLVPMVRDAFLVNELVRIDCQGLPKSDYKKIGCKLRD 342
>gi|225453847|ref|XP_002272563.1| PREDICTED: CRS2-associated factor 1, mitochondrial [Vitis vinifera]
gi|296089125|emb|CBI38828.3| unnamed protein product [Vitis vinifera]
Length = 418
Score = 515 bits (1326), Expect = e-143, Method: Compositional matrix adjust.
Identities = 269/357 (75%), Positives = 293/357 (82%), Gaps = 10/357 (2%)
Query: 1 MIFNRFSRQKPSLRSQPFTLLTCCLSATAANTTNNSSKLYDHYSFKPPPSLSPKPENPNP 60
I RFSRQ S TL T LS++A + SS+L DHYSFK P +SP +NPNP
Sbjct: 2 FIVTRFSRQIRQSHSAAVTLSTRRLSSSAPPSP--SSRLLDHYSFKSP--VSPF-QNPNP 56
Query: 61 TLNPNKNFKKKSKPQYRPPSSLDAPKKK--YTDLPFDFRYSYTETNQNVRPIGLREPKYS 118
NP + KKK KP YRPPSSLD KK +DLPFDFRYSYTE++ VRPIGLREPKYS
Sbjct: 57 --NPEPSTKKKQKPPYRPPSSLDRTGKKPLRSDLPFDFRYSYTESSPAVRPIGLREPKYS 114
Query: 119 PFGPGRLEREWTGVCAPAADPKVKSAEEGAEDPNLEEKRILVRERIQGEPLTNAERKALV 178
PFGPG L+REWTGVCAPA DPKV+S + G EDP LEEKR +RE+ GEPLT AERK LV
Sbjct: 115 PFGPGLLDREWTGVCAPAVDPKVRSVD-GKEDPKLEEKRRRMREKTLGEPLTAAERKILV 173
Query: 179 EKCHRNRTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKT 238
EKC R+RTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKC+GVPTVDMKNVC QLEDKT
Sbjct: 174 EKCQRHRTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCMGVPTVDMKNVCTQLEDKT 233
Query: 239 FGKIIFRHGGTLVLYRGRNYNPKKRPVIPLMLWRPHEPVYPKLIKTTIEGLSIEETKEMR 298
GK+I R GG LVLYRGRNY+PKKRPVIPLMLWRPHEP+YP+LIKT I+GLSIEETKEMR
Sbjct: 234 SGKVIHRQGGLLVLYRGRNYHPKKRPVIPLMLWRPHEPIYPRLIKTVIDGLSIEETKEMR 293
Query: 299 KRGLAVPVLTKLAKNGYYGSLVPMVRDAFLVSELVRIDCQGLERSDYKKIGCKLRSW 355
KRGLAVP LTKLAKNGYYGSLVPMVRDAFL EL+RIDCQGLER DYKKIGCKLR +
Sbjct: 294 KRGLAVPALTKLAKNGYYGSLVPMVRDAFLTDELIRIDCQGLERRDYKKIGCKLRDF 350
>gi|224130086|ref|XP_002320749.1| predicted protein [Populus trichocarpa]
gi|222861522|gb|EEE99064.1| predicted protein [Populus trichocarpa]
Length = 405
Score = 497 bits (1279), Expect = e-138, Method: Compositional matrix adjust.
Identities = 254/345 (73%), Positives = 287/345 (83%), Gaps = 12/345 (3%)
Query: 13 LRSQPFTLLTCCLSATAANTTNNSSKLYDHYSFKPPPSLSPKPENPNPTLNPNKNFKKKS 72
L Q LT LS++ A SSKL+D Y FKPPPSLSP+ P + N N KKK
Sbjct: 7 LSGQKHFFLTRHLSSSTA-----SSKLHDIYCFKPPPSLSPE----KPQTSNNNNNKKKQ 57
Query: 73 KPQYRPPSSLDAPKKKY-TDLPFDFRYSYTETNQNVRPIGLREPKYSPFGPGRLEREWTG 131
KP+YRPPSSL+ KK +DLPFDFR+SYTE+ +VRPIGLREPKYSPFGPGRL+R WTG
Sbjct: 58 KPEYRPPSSLETNKKPLRSDLPFDFRFSYTESCPDVRPIGLREPKYSPFGPGRLDRTWTG 117
Query: 132 VCAPAADPKVKSAEEGA--EDPNLEEKRILVRERIQGEPLTNAERKALVEKCHRNRTKRQ 189
VCAPA D KVKS ++G E +LEEKR ++RE+IQG+PLT AE K LV+KC RN+TK+Q
Sbjct: 118 VCAPAVDLKVKSVDDGVGEEGLDLEEKRTVMREKIQGKPLTKAEGKILVDKCQRNKTKKQ 177
Query: 190 INLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIFRHGGT 249
INLG DGLTHNMLNDIHNHWKH EAVR+KC+GVPTVDMKNVC QLEDKTFGKII RH G
Sbjct: 178 INLGIDGLTHNMLNDIHNHWKHDEAVRVKCMGVPTVDMKNVCTQLEDKTFGKIIHRHCGL 237
Query: 250 LVLYRGRNYNPKKRPVIPLMLWRPHEPVYPKLIKTTIEGLSIEETKEMRKRGLAVPVLTK 309
LVLYRGRNY+P+ RPVIPLMLW+PHEPVYP+LIKTTI+GLSIEETKEMRKRGLAVP LTK
Sbjct: 238 LVLYRGRNYHPRNRPVIPLMLWKPHEPVYPRLIKTTIDGLSIEETKEMRKRGLAVPALTK 297
Query: 310 LAKNGYYGSLVPMVRDAFLVSELVRIDCQGLERSDYKKIGCKLRS 354
L++NGY+GSLVPMVRDAFLVSELVRIDCQGL+RSD KKIGCKLR
Sbjct: 298 LSRNGYFGSLVPMVRDAFLVSELVRIDCQGLDRSDSKKIGCKLRD 342
>gi|356560247|ref|XP_003548405.1| PREDICTED: CRS2-associated factor 1, mitochondrial-like [Glycine
max]
Length = 396
Score = 494 bits (1272), Expect = e-137, Method: Compositional matrix adjust.
Identities = 248/357 (69%), Positives = 288/357 (80%), Gaps = 17/357 (4%)
Query: 1 MIFNRFSRQKPSLRSQPFTLLTCCLSATAANTTNNSSKLYDHYSFKPPPSLSPKPENPNP 60
+ R +RQ PS TLLT LS+ A SKL+ +Y+FKPP SL+P+P+ N
Sbjct: 2 FLLTRLTRQNPSRA----TLLTRHLSSAA-------SKLHSNYTFKPPSSLAPQPQCSN- 49
Query: 61 TLNPNKNFKKKSKPQYRPPSSLDAPKKK---YTDLPFDFRYSYTETNQNVRPIGLREPKY 117
P+K +KK KP+YRPPSSLD +K DLPFDFR+SYTE++ VRPIGLREPKY
Sbjct: 50 -FPPSKPNQKKPKPRYRPPSSLDQAGRKPVRSNDLPFDFRFSYTESSAKVRPIGLREPKY 108
Query: 118 SPFGPGRLEREWTGVCAPAADPKVKSAEEGAEDPNLEEKRILVRERIQGEPLTNAERKAL 177
SPFGPGR++R+WTGVCAPA DP V+S E G EDP LEE+R RE IQG+PL++ ERKAL
Sbjct: 109 SPFGPGRVDRKWTGVCAPAVDPTVESLE-GPEDPKLEEQRKKKREMIQGKPLSSEERKAL 167
Query: 178 VEKCHRNRTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDK 237
V + R++T R +NLGRDGLTHNMLN IHNHWK AEAVRIKC+GVPT+DM N+C QLEDK
Sbjct: 168 VSQFERSKTNRHVNLGRDGLTHNMLNVIHNHWKFAEAVRIKCMGVPTMDMNNICTQLEDK 227
Query: 238 TFGKIIFRHGGTLVLYRGRNYNPKKRPVIPLMLWRPHEPVYPKLIKTTIEGLSIEETKEM 297
TFGK+IFRHGGTL+LYRGRNYNPKKRPVIP+MLW+PHEPVYP+LIKTTI+GLSI+ETKEM
Sbjct: 228 TFGKVIFRHGGTLILYRGRNYNPKKRPVIPVMLWKPHEPVYPRLIKTTIDGLSIKETKEM 287
Query: 298 RKRGLAVPVLTKLAKNGYYGSLVPMVRDAFLVSELVRIDCQGLERSDYKKIGCKLRS 354
RKRGL+VP LTKLAKNGYY LVPMVRDAFL ELVRIDC+GLER DYKKIGCKLR
Sbjct: 288 RKRGLSVPALTKLAKNGYYAFLVPMVRDAFLSCELVRIDCEGLERKDYKKIGCKLRD 344
>gi|297802930|ref|XP_002869349.1| DNA binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297315185|gb|EFH45608.1| DNA binding protein [Arabidopsis lyrata subsp. lyrata]
Length = 408
Score = 489 bits (1258), Expect = e-135, Method: Compositional matrix adjust.
Identities = 254/354 (71%), Positives = 286/354 (80%), Gaps = 9/354 (2%)
Query: 1 MIFNRFSRQKPSLRSQPFTLLTCCLSATAANTTNNSSKLYDHYSFKPPPSLSPKPENPNP 60
M R SR PS FTLLT L + T +SS+L D Y+F+ PP + NP
Sbjct: 1 MFLIRLSRHNPS----SFTLLTRRLH----DQTISSSRLRDLYNFQSPPPPLSSSASENP 52
Query: 61 TLNPNKNFKKKSKPQYRPPSSLDAPKKKYTDLPFDFRYSYTETNQNVRPIGLREPKYSPF 120
N N KKK KPQYRPPSSL+ K ++DLPFDFR+SYTE++ NVRPIGLREPKYSPF
Sbjct: 53 DFNQKNNNKKKPKPQYRPPSSLEGVKTVHSDLPFDFRFSYTESSSNVRPIGLREPKYSPF 112
Query: 121 GPGRLEREWTGVCAPAADPKVKSAEEGAEDPNLEEKRILVRERIQGEPLTNAERKALVEK 180
GP RL+REWTGVCAPA DPKV+S + G EDP LEEKR VRE+IQG LT AERK LVE
Sbjct: 113 GPDRLDREWTGVCAPAVDPKVESVD-GVEDPKLEEKRRKVREKIQGASLTEAERKFLVEL 171
Query: 181 CHRNRTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFG 240
C RN+TKRQ+NLGRDGLTHNMLNDI+NHWKHAEAVR+KCLGVPT+DMKNV F LEDKTFG
Sbjct: 172 CQRNKTKRQVNLGRDGLTHNMLNDIYNHWKHAEAVRVKCLGVPTLDMKNVIFHLEDKTFG 231
Query: 241 KIIFRHGGTLVLYRGRNYNPKKRPVIPLMLWRPHEPVYPKLIKTTIEGLSIEETKEMRKR 300
+++ +H GTLVLYRGRNY+PKKRP IPLMLW+PHEPVYP+LIKTTI+GLSI+ETK MRK+
Sbjct: 232 QVVSKHCGTLVLYRGRNYDPKKRPKIPLMLWKPHEPVYPRLIKTTIDGLSIDETKAMRKK 291
Query: 301 GLAVPVLTKLAKNGYYGSLVPMVRDAFLVSELVRIDCQGLERSDYKKIGCKLRS 354
GLAVP LTKLAKNGYYGSLVPMVRDAFLVSELVRIDC GL+R DYKKIG KLR
Sbjct: 292 GLAVPALTKLAKNGYYGSLVPMVRDAFLVSELVRIDCLGLDRKDYKKIGAKLRD 345
>gi|22329043|ref|NP_194830.2| CRS2-associated factor 1 [Arabidopsis thaliana]
gi|75161464|sp|Q8VYD9.1|CAF1M_ARATH RecName: Full=CRS2-associated factor 1, mitochondrial; Flags:
Precursor
gi|18176015|gb|AAL59968.1| unknown protein [Arabidopsis thaliana]
gi|20465409|gb|AAM20129.1| unknown protein [Arabidopsis thaliana]
gi|332660446|gb|AEE85846.1| CRS2-associated factor 1 [Arabidopsis thaliana]
Length = 405
Score = 483 bits (1244), Expect = e-134, Method: Compositional matrix adjust.
Identities = 255/354 (72%), Positives = 286/354 (80%), Gaps = 10/354 (2%)
Query: 1 MIFNRFSRQKPSLRSQPFTLLTCCLSATAANTTNNSSKLYDHYSFKPPPSLSPKPENPNP 60
M R SR PS FTLLT L + T +SS+L D Y+F+ PP LS NP
Sbjct: 1 MFLIRLSRHNPS----SFTLLTRRLH----DQTISSSRLRDLYNFQSPPPLSSSASE-NP 51
Query: 61 TLNPNKNFKKKSKPQYRPPSSLDAPKKKYTDLPFDFRYSYTETNQNVRPIGLREPKYSPF 120
N N KKK KPQYRPPSSL+ K ++DLPFDFR+SYTE+ NVRPIGLREPKYSPF
Sbjct: 52 DFNQKNNNKKKPKPQYRPPSSLEGVKTVHSDLPFDFRFSYTESCSNVRPIGLREPKYSPF 111
Query: 121 GPGRLEREWTGVCAPAADPKVKSAEEGAEDPNLEEKRILVRERIQGEPLTNAERKALVEK 180
GP RL+REWTGVCAPA +PKV+S + G EDP LEEKR VRE+IQG LT AERK LVE
Sbjct: 112 GPDRLDREWTGVCAPAVNPKVESVD-GVEDPKLEEKRRKVREKIQGASLTEAERKFLVEL 170
Query: 181 CHRNRTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFG 240
C RN+TKRQ+NLGRDGLTHNMLND++NHWKHAEAVR+KCLGVPT+DMKNV F LEDKTFG
Sbjct: 171 CQRNKTKRQVNLGRDGLTHNMLNDVYNHWKHAEAVRVKCLGVPTLDMKNVIFHLEDKTFG 230
Query: 241 KIIFRHGGTLVLYRGRNYNPKKRPVIPLMLWRPHEPVYPKLIKTTIEGLSIEETKEMRKR 300
+++ +H GTLVLYRGRNY+PKKRP IPLMLW+PHEPVYP+LIKTTI+GLSI+ETK MRK+
Sbjct: 231 QVVSKHSGTLVLYRGRNYDPKKRPKIPLMLWKPHEPVYPRLIKTTIDGLSIDETKAMRKK 290
Query: 301 GLAVPVLTKLAKNGYYGSLVPMVRDAFLVSELVRIDCQGLERSDYKKIGCKLRS 354
GLAVP LTKLAKNGYYGSLVPMVRDAFLVSELVRIDC GLER DYKKIG KLR
Sbjct: 291 GLAVPALTKLAKNGYYGSLVPMVRDAFLVSELVRIDCLGLERKDYKKIGAKLRD 344
>gi|449432211|ref|XP_004133893.1| PREDICTED: CRS2-associated factor 1, mitochondrial-like [Cucumis
sativus]
gi|449480099|ref|XP_004155799.1| PREDICTED: LOW QUALITY PROTEIN: CRS2-associated factor 1,
mitochondrial-like [Cucumis sativus]
Length = 392
Score = 474 bits (1221), Expect = e-131, Method: Compositional matrix adjust.
Identities = 231/277 (83%), Positives = 249/277 (89%), Gaps = 3/277 (1%)
Query: 80 SSLDAPKKK--YTDLPFDFRYSYTETNQNVRPIGLREPKYSPFGPGRLEREWTGVCAPAA 137
SSLD KK ++LPFDF+YSYTET+ +VRPIGLREPKYSPFGPGRL+REWTGVCAPAA
Sbjct: 63 SSLDLGGKKPRRSNLPFDFQYSYTETSPSVRPIGLREPKYSPFGPGRLDREWTGVCAPAA 122
Query: 138 DPKVKSAEEGAEDPNLEEKRILVRERIQGEPLTNAERKALVEKCHRNRTKRQINLGRDGL 197
+PK S E G EDP LE KR ++RE IQGEPL AERKALVEKC +N+TKRQINLGRDGL
Sbjct: 123 NPKATSVE-GMEDPRLEGKRRVMREAIQGEPLPGAERKALVEKCQKNKTKRQINLGRDGL 181
Query: 198 THNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIFRHGGTLVLYRGRN 257
THNMLNDIHNHW+H EAVRIKCLGVPTVDMKNVC QLEDKTFGKII RHGG LVLYRGRN
Sbjct: 182 THNMLNDIHNHWRHGEAVRIKCLGVPTVDMKNVCTQLEDKTFGKIIHRHGGFLVLYRGRN 241
Query: 258 YNPKKRPVIPLMLWRPHEPVYPKLIKTTIEGLSIEETKEMRKRGLAVPVLTKLAKNGYYG 317
YNPKKRP IPLMLWRPHEP+YP+LIKTTI+GLSI+ETKEMRK+GLAVP LTKLAKNGYYG
Sbjct: 242 YNPKKRPFIPLMLWRPHEPIYPRLIKTTIDGLSIDETKEMRKKGLAVPALTKLAKNGYYG 301
Query: 318 SLVPMVRDAFLVSELVRIDCQGLERSDYKKIGCKLRS 354
SLVPMVRDAFL ELVRIDC+GLERSDYKKIGCKLR
Sbjct: 302 SLVPMVRDAFLSCELVRIDCKGLERSDYKKIGCKLRD 338
>gi|2980765|emb|CAA18192.1| hypothetical protein [Arabidopsis thaliana]
gi|7270003|emb|CAB79819.1| hypothetical protein [Arabidopsis thaliana]
Length = 392
Score = 472 bits (1215), Expect = e-130, Method: Compositional matrix adjust.
Identities = 255/366 (69%), Positives = 286/366 (78%), Gaps = 23/366 (6%)
Query: 1 MIFNRFSRQKPSLRSQPFTLLTCCLSATAANTTNNSSKLYDHYSFKPPPSLSPKPENPNP 60
M R SR PS FTLLT L + T +SS+L D Y+F+ PP LS NP
Sbjct: 1 MFLIRLSRHNPS----SFTLLTRRLH----DQTISSSRLRDLYNFQSPPPLSSSASE-NP 51
Query: 61 TLNPNKNFKKKSKPQYRPPSSLDAPKKKYTDLPFDFRYSYTETNQNVRPIGLREPKYSPF 120
N N KKK KPQYRPPSSL+ K ++DLPFDFR+SYTE+ NVRPIGLREPKYSPF
Sbjct: 52 DFNQKNNNKKKPKPQYRPPSSLEGVKTVHSDLPFDFRFSYTESCSNVRPIGLREPKYSPF 111
Query: 121 GPGRLEREWTGVCAPAADPKVKSAEEGAEDPNLEEKRILVRERIQGEPLTNAERKALVEK 180
GP RL+REWTGVCAPA +PKV+S + G EDP LEEKR VRE+IQG LT AERK LVE
Sbjct: 112 GPDRLDREWTGVCAPAVNPKVESVD-GVEDPKLEEKRRKVREKIQGASLTEAERKFLVEL 170
Query: 181 CHRNRTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFG 240
C RN+TKRQ+NLGRDGLTHNMLND++NHWKHAEAVR+KCLGVPT+DMKNV F LEDKTFG
Sbjct: 171 CQRNKTKRQVNLGRDGLTHNMLNDVYNHWKHAEAVRVKCLGVPTLDMKNVIFHLEDKTFG 230
Query: 241 KIIFRHGGTLVLYRGRNYNPKKRPVIPLMLWRPHEPVYPKLIKTTIEGLSIEETKEMRKR 300
+++ +H GTLVLYRGRNY+PKKRP IPLMLW+PHEPVYP+LIKTTI+GLSI+ETK MRK+
Sbjct: 231 QVVSKHSGTLVLYRGRNYDPKKRPKIPLMLWKPHEPVYPRLIKTTIDGLSIDETKAMRKK 290
Query: 301 GLAVPVLTKL-------------AKNGYYGSLVPMVRDAFLVSELVRIDCQGLERSDYKK 347
GLAVP LTKL AKNGYYGSLVPMVRDAFLVSELVRIDC GLER DYKK
Sbjct: 291 GLAVPALTKLGPYLFHAFLFLNSAKNGYYGSLVPMVRDAFLVSELVRIDCLGLERKDYKK 350
Query: 348 IGCKLR 353
IG KLR
Sbjct: 351 IGAKLR 356
>gi|357144801|ref|XP_003573418.1| PREDICTED: CRS2-associated factor 1, mitochondrial-like
[Brachypodium distachyon]
Length = 437
Score = 446 bits (1148), Expect = e-123, Method: Compositional matrix adjust.
Identities = 224/329 (68%), Positives = 260/329 (79%), Gaps = 18/329 (5%)
Query: 37 SKLYDHYSFKPPPSLSPKPENPNPTLNPNKNFKKK---SKPQYRPPSSLDAPKK--KYTD 91
S+L DHY F PP SL+P NP P+ +KK KP YRPPSSLD + ++D
Sbjct: 22 SRLLDHYGFAPPASLTP-----NPREAPHAAAEKKRRTKKPPYRPPSSLDRGGRPASHSD 76
Query: 92 LPFDFRYSYTETNQNVRPIGLREPKYSPFGPGRLEREWTGVCAPAADPKVKSAEEGAEDP 151
LPFDFR+SYTE+ + +PIGLREPKYSPFGPGRL+R WTG+CAPA D ++ AEDP
Sbjct: 77 LPFDFRFSYTESTPDAKPIGLREPKYSPFGPGRLDRPWTGLCAPAVDTTIRDVH--AEDP 134
Query: 152 ------NLEEKRILVRERIQGEPLTNAERKALVEKCHRNRTKRQINLGRDGLTHNMLNDI 205
+L+E R RER+ GEPLT AER +V+KC RNRTKRQ+NLGRDGLTHNMLNDI
Sbjct: 135 APAAEKDLQEARRRERERVLGEPLTPAERTFVVDKCQRNRTKRQVNLGRDGLTHNMLNDI 194
Query: 206 HNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIFRHGGTLVLYRGRNYNPKKRPV 265
HNHWKH EAVR+KCLGVPTVDM+NVC +LEDKT G II RHGG L+LYRGR+Y+PKKRPV
Sbjct: 195 HNHWKHGEAVRVKCLGVPTVDMQNVCHELEDKTGGLIIHRHGGQLILYRGRHYHPKKRPV 254
Query: 266 IPLMLWRPHEPVYPKLIKTTIEGLSIEETKEMRKRGLAVPVLTKLAKNGYYGSLVPMVRD 325
IPLMLW+P EP+YP+LIKTTIEGL++ ETK MRK+GL VPVLTKLAKNGYY SLVPMVRD
Sbjct: 255 IPLMLWKPAEPIYPRLIKTTIEGLTVVETKAMRKKGLHVPVLTKLAKNGYYASLVPMVRD 314
Query: 326 AFLVSELVRIDCQGLERSDYKKIGCKLRS 354
AFL ELVRIDC+GL +SDY+KIG KLR
Sbjct: 315 AFLTDELVRIDCKGLPKSDYRKIGVKLRD 343
>gi|326525102|dbj|BAK07821.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 443
Score = 437 bits (1124), Expect = e-120, Method: Compositional matrix adjust.
Identities = 220/327 (67%), Positives = 259/327 (79%), Gaps = 11/327 (3%)
Query: 37 SKLYDHYSFKPPPSLSPKPENPNPTLNPNKNFKKKSK-PQYRPPSSLDAPKK--KYTDLP 93
S+L D Y F PP SL+P + + K+++K P YRPPSSLD + ++DLP
Sbjct: 24 SRLLDLYGFVPPASLTPTAKEISHGTGAAAGQKRRTKKPPYRPPSSLDRGDRPASHSDLP 83
Query: 94 FDFRYSYTETNQNVRPIGLREPKYSPFGPGRLEREWTGVCAPAADPKVKSAEEGAEDP-- 151
FDFR+SYTE++ + +PIGLREPKYSPFGPGRL+R W+G+CAPA D ++S + AEDP
Sbjct: 84 FDFRFSYTESSLDAKPIGLREPKYSPFGPGRLDRPWSGLCAPAVDTTLRSVD--AEDPAP 141
Query: 152 ----NLEEKRILVRERIQGEPLTNAERKALVEKCHRNRTKRQINLGRDGLTHNMLNDIHN 207
+LEE R RER+ GEPLT AER LVEKC +NRTKRQINLGRDGLTHNMLNDIHN
Sbjct: 142 AAEKDLEEARRRERERVLGEPLTPAERSFLVEKCQKNRTKRQINLGRDGLTHNMLNDIHN 201
Query: 208 HWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIFRHGGTLVLYRGRNYNPKKRPVIP 267
HWKH E VR+KCLGVPTVDM+NVC +LEDKT G II RHGG L+LYRGR+Y+PKKRPVIP
Sbjct: 202 HWKHGEGVRVKCLGVPTVDMQNVCHELEDKTGGLIIHRHGGQLILYRGRHYHPKKRPVIP 261
Query: 268 LMLWRPHEPVYPKLIKTTIEGLSIEETKEMRKRGLAVPVLTKLAKNGYYGSLVPMVRDAF 327
LMLW+P EP+YP+LIKTTIEGL++EETKEMRK+GL VLTKLAKNGYY SLVPMVRD F
Sbjct: 262 LMLWKPAEPIYPRLIKTTIEGLTVEETKEMRKKGLHASVLTKLAKNGYYASLVPMVRDGF 321
Query: 328 LVSELVRIDCQGLERSDYKKIGCKLRS 354
L ELVRIDC+GL +SDY+KIG KLR
Sbjct: 322 LTDELVRIDCKGLPKSDYRKIGVKLRD 348
>gi|242078343|ref|XP_002443940.1| hypothetical protein SORBIDRAFT_07g004760 [Sorghum bicolor]
gi|241940290|gb|EES13435.1| hypothetical protein SORBIDRAFT_07g004760 [Sorghum bicolor]
Length = 437
Score = 436 bits (1122), Expect = e-120, Method: Compositional matrix adjust.
Identities = 222/326 (68%), Positives = 259/326 (79%), Gaps = 11/326 (3%)
Query: 37 SKLYDHYSFKPPPSLSPKPENPNPTLNPNKNFKKKSK-PQYRPPSSLD--APKKKYTDLP 93
S+L D Y F+ P SL+P + P+ + K+++K P YRPPSSLD + ++DLP
Sbjct: 25 SRLIDRYGFEAPDSLAPAAQREPPSDTASSTKKRRAKKPPYRPPSSLDRGGRPRAHSDLP 84
Query: 94 FDFRYSYTETNQNVRPIGLREPKYSPFGPGRLEREWTGVCAPAADPKVKSAEEGAEDP-- 151
FDFR+SYTE+ +PIGLREP+YSPFGPGRL+R WTG+CAPA D ++ E AEDP
Sbjct: 85 FDFRFSYTESTPASKPIGLREPRYSPFGPGRLDRPWTGLCAPAVDATLRDVE--AEDPLP 142
Query: 152 ----NLEEKRILVRERIQGEPLTNAERKALVEKCHRNRTKRQINLGRDGLTHNMLNDIHN 207
LEE R RER+ GEPLT AER LV+KC +NRTKRQINLGRDGLTHNMLNDIHN
Sbjct: 143 DAEKGLEEARRRERERVLGEPLTPAERAFLVDKCQKNRTKRQINLGRDGLTHNMLNDIHN 202
Query: 208 HWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIFRHGGTLVLYRGRNYNPKKRPVIP 267
+WK EAVRIKCLGVPTVDM+NVC QLEDKT G II RHG L+LYRGR+YNPKKRPVIP
Sbjct: 203 NWKTCEAVRIKCLGVPTVDMQNVCHQLEDKTGGVIIHRHGSLLILYRGRHYNPKKRPVIP 262
Query: 268 LMLWRPHEPVYPKLIKTTIEGLSIEETKEMRKRGLAVPVLTKLAKNGYYGSLVPMVRDAF 327
LMLW+P EPVYP+LIKTTIEGL++EETK+MRK+GL PVLTKLAKNGYY S+VPMVRDAF
Sbjct: 263 LMLWKPAEPVYPRLIKTTIEGLTVEETKQMRKKGLHAPVLTKLAKNGYYASIVPMVRDAF 322
Query: 328 LVSELVRIDCQGLERSDYKKIGCKLR 353
L+ ELVRIDC+GL +SDYKKIG KLR
Sbjct: 323 LMDELVRIDCKGLPKSDYKKIGVKLR 348
>gi|226508160|ref|NP_001140244.1| uncharacterized protein LOC100272285 [Zea mays]
gi|194698680|gb|ACF83424.1| unknown [Zea mays]
gi|413917198|gb|AFW57130.1| hypothetical protein ZEAMMB73_054545 [Zea mays]
Length = 424
Score = 415 bits (1067), Expect = e-113, Method: Compositional matrix adjust.
Identities = 220/329 (66%), Positives = 255/329 (77%), Gaps = 13/329 (3%)
Query: 37 SKLYDHYSFKPPPSLSPKPENPNPTLNPNKNFKKKSK---PQYRPPSSLDAPKK--KYTD 91
S+L D Y F P SL+P P P+ + KK + P YRPPSSLD + ++D
Sbjct: 24 SRLLDRYGFVAPDSLTPAPREPHSDTADSAAAAKKRRAKKPPYRPPSSLDRGGRPPAHSD 83
Query: 92 LPFDFRYSYTETNQNVRPIGLREPKYSPFGPGRLEREWTGVCAPAADPKVKSAEEGAEDP 151
LPFDFR+SYTE+ +PIGLREP+YSPFGPGRL+R WTG+CAPA D ++ E AEDP
Sbjct: 84 LPFDFRFSYTESTPASKPIGLREPRYSPFGPGRLDRPWTGLCAPAVDATLRDVE--AEDP 141
Query: 152 ------NLEEKRILVRERIQGEPLTNAERKALVEKCHRNRTKRQINLGRDGLTHNMLNDI 205
LEE R RER+ GEPLT AER LV++C +NRTKRQINLGRDG THNML+D+
Sbjct: 142 LPDAERGLEEARRRERERVLGEPLTPAERAFLVDRCQKNRTKRQINLGRDGFTHNMLSDV 201
Query: 206 HNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIFRHGGTLVLYRGRNYNPKKRPV 265
HN+WK EAVRIKCLGVPTVDM+NVC QLEDKT G II RHG L+LYRGR+YNPKKRPV
Sbjct: 202 HNNWKTCEAVRIKCLGVPTVDMQNVCHQLEDKTGGLIIHRHGSLLILYRGRHYNPKKRPV 261
Query: 266 IPLMLWRPHEPVYPKLIKTTIEGLSIEETKEMRKRGLAVPVLTKLAKNGYYGSLVPMVRD 325
+PLMLW+P EPVYP+LIKTTIEGL++EETK+MRK+GL VPVLTKLAKNGYY SLVPMVRD
Sbjct: 262 VPLMLWKPAEPVYPRLIKTTIEGLTVEETKQMRKKGLHVPVLTKLAKNGYYASLVPMVRD 321
Query: 326 AFLVSELVRIDCQGLERSDYKKIGCKLRS 354
AFL ELVRIDC+GL +SDYKKIG KLR
Sbjct: 322 AFLTDELVRIDCKGLPKSDYKKIGVKLRD 350
>gi|115475027|ref|NP_001061110.1| Os08g0174900 [Oryza sativa Japonica Group]
gi|75133775|sp|Q6Z4U2.1|CAF1M_ORYSJ RecName: Full=CRS2-associated factor 1, mitochondrial; Flags:
Precursor
gi|40253285|dbj|BAD05220.1| putative CRS2-associated factor 1 [Oryza sativa Japonica Group]
gi|40253602|dbj|BAD05547.1| putative CRS2-associated factor 1 [Oryza sativa Japonica Group]
gi|113623079|dbj|BAF23024.1| Os08g0174900 [Oryza sativa Japonica Group]
gi|125560323|gb|EAZ05771.1| hypothetical protein OsI_28005 [Oryza sativa Indica Group]
Length = 428
Score = 404 bits (1039), Expect = e-110, Method: Compositional matrix adjust.
Identities = 215/323 (66%), Positives = 249/323 (77%), Gaps = 10/323 (3%)
Query: 37 SKLYDHYSFKPPPSLSPKPENPNPTLNPNKNFKKKSKPQYRPPSSLDAPKK--KYTDLPF 94
S L D Y F PP SL+P + + + ++ KP YRPPSSLD + +DLPF
Sbjct: 23 SGLLDRYGFVPPASLTPH----SASDDGGAKKRRPKKPPYRPPSSLDRGGRPAARSDLPF 78
Query: 95 DFRYSYTETNQNVRPIGLREPKYSPFGPGRLEREWTGVCAPAADPKVKSAEEGAEDPNLE 154
DFR+SYTE++ +PIGLREPKYSPFGPGRL+R WTG+CAPA D ++ A P E
Sbjct: 79 DFRFSYTESSPGDKPIGLREPKYSPFGPGRLDRPWTGLCAPAVDTTLRDAHADDPAPAAE 138
Query: 155 EKRILVRER----IQGEPLTNAERKALVEKCHRNRTKRQINLGRDGLTHNMLNDIHNHWK 210
+ R R + GEPLT AER LV KC ++RTK+QINLGRDGLTHNMLNDIHNHWK
Sbjct: 139 RELEEARRRERERVLGEPLTPAERAFLVSKCQKSRTKKQINLGRDGLTHNMLNDIHNHWK 198
Query: 211 HAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIFRHGGTLVLYRGRNYNPKKRPVIPLML 270
+ EAVR+KCLGVPTVDM+NVC QLEDKT G II RHGG L+LYRGR+YNPKKRPVIPLML
Sbjct: 199 NDEAVRVKCLGVPTVDMQNVCHQLEDKTGGLIIHRHGGQLILYRGRHYNPKKRPVIPLML 258
Query: 271 WRPHEPVYPKLIKTTIEGLSIEETKEMRKRGLAVPVLTKLAKNGYYGSLVPMVRDAFLVS 330
W+P EPVYP+LIKTTIEGL++EETKEMRK+GL VPVLTKLAKNGYY SLVPMVRDAFL
Sbjct: 259 WKPAEPVYPRLIKTTIEGLTVEETKEMRKKGLYVPVLTKLAKNGYYASLVPMVRDAFLTD 318
Query: 331 ELVRIDCQGLERSDYKKIGCKLR 353
ELVRID +GL +SDY+KIG KLR
Sbjct: 319 ELVRIDSKGLPKSDYRKIGVKLR 341
>gi|42573097|ref|NP_974645.1| CRS2-associated factor 1 [Arabidopsis thaliana]
gi|332660445|gb|AEE85845.1| CRS2-associated factor 1 [Arabidopsis thaliana]
Length = 341
Score = 401 bits (1030), Expect = e-109, Method: Compositional matrix adjust.
Identities = 216/319 (67%), Positives = 249/319 (78%), Gaps = 10/319 (3%)
Query: 1 MIFNRFSRQKPSLRSQPFTLLTCCLSATAANTTNNSSKLYDHYSFKPPPSLSPKPENPNP 60
M R SR PS FTLLT L + T +SS+L D Y+F+ PP LS NP
Sbjct: 1 MFLIRLSRHNPS----SFTLLTRRLH----DQTISSSRLRDLYNFQSPPPLSSSASE-NP 51
Query: 61 TLNPNKNFKKKSKPQYRPPSSLDAPKKKYTDLPFDFRYSYTETNQNVRPIGLREPKYSPF 120
N N KKK KPQYRPPSSL+ K ++DLPFDFR+SYTE+ NVRPIGLREPKYSPF
Sbjct: 52 DFNQKNNNKKKPKPQYRPPSSLEGVKTVHSDLPFDFRFSYTESCSNVRPIGLREPKYSPF 111
Query: 121 GPGRLEREWTGVCAPAADPKVKSAEEGAEDPNLEEKRILVRERIQGEPLTNAERKALVEK 180
GP RL+REWTGVCAPA +PKV+S + G EDP LEEKR VRE+IQG LT AERK LVE
Sbjct: 112 GPDRLDREWTGVCAPAVNPKVESVD-GVEDPKLEEKRRKVREKIQGASLTEAERKFLVEL 170
Query: 181 CHRNRTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFG 240
C RN+TKRQ+NLGRDGLTHNMLND++NHWKHAEAVR+KCLGVPT+DMKNV F LEDKTFG
Sbjct: 171 CQRNKTKRQVNLGRDGLTHNMLNDVYNHWKHAEAVRVKCLGVPTLDMKNVIFHLEDKTFG 230
Query: 241 KIIFRHGGTLVLYRGRNYNPKKRPVIPLMLWRPHEPVYPKLIKTTIEGLSIEETKEMRKR 300
+++ +H GTLVLYRGRNY+PKKRP IPLMLW+PHEPVYP+LIKTTI+GLSI+ETK MRK+
Sbjct: 231 QVVSKHSGTLVLYRGRNYDPKKRPKIPLMLWKPHEPVYPRLIKTTIDGLSIDETKAMRKK 290
Query: 301 GLAVPVLTKLAKNGYYGSL 319
GLAVP LTKL ++ L
Sbjct: 291 GLAVPALTKLGPYLFHAFL 309
>gi|14596153|gb|AAK68804.1| Unknown protein [Arabidopsis thaliana]
Length = 284
Score = 376 bits (965), Expect = e-101, Method: Compositional matrix adjust.
Identities = 202/294 (68%), Positives = 232/294 (78%), Gaps = 10/294 (3%)
Query: 1 MIFNRFSRQKPSLRSQPFTLLTCCLSATAANTTNNSSKLYDHYSFKPPPSLSPKPENPNP 60
M R SR PS FTLLT L + T +SS+L D Y+F+ PP LS NP
Sbjct: 1 MFLIRLSRHNPS----SFTLLTRRLH----DQTISSSRLRDLYNFQSPPPLSSSASE-NP 51
Query: 61 TLNPNKNFKKKSKPQYRPPSSLDAPKKKYTDLPFDFRYSYTETNQNVRPIGLREPKYSPF 120
N N KKK KPQYRPPSSL+ K ++DLPFDFR+SYTE+ NVRPIGLREPKYSPF
Sbjct: 52 DFNQKNNNKKKPKPQYRPPSSLEGVKTVHSDLPFDFRFSYTESCSNVRPIGLREPKYSPF 111
Query: 121 GPGRLEREWTGVCAPAADPKVKSAEEGAEDPNLEEKRILVRERIQGEPLTNAERKALVEK 180
GP RL+REWTGVCAPA +PKV+S + G EDP LEEKR VRE+IQG LT AERK LVE
Sbjct: 112 GPDRLDREWTGVCAPAVNPKVESVD-GVEDPKLEEKRRKVREKIQGASLTEAERKFLVEL 170
Query: 181 CHRNRTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFG 240
C RN+TKRQ+NLGRDGLTHNMLND++NHWKHAEAVR+KCLGVPT+DMKNV F LEDKTFG
Sbjct: 171 CQRNKTKRQVNLGRDGLTHNMLNDVYNHWKHAEAVRVKCLGVPTLDMKNVIFHLEDKTFG 230
Query: 241 KIIFRHGGTLVLYRGRNYNPKKRPVIPLMLWRPHEPVYPKLIKTTIEGLSIEET 294
+++ +H GTLVLYRGRNY+PKKRP IPLMLW+PHEPVYP+LIKTTI+GLSI+ET
Sbjct: 231 QVVSKHSGTLVLYRGRNYDPKKRPKIPLMLWKPHEPVYPRLIKTTIDGLSIDET 284
>gi|125602364|gb|EAZ41689.1| hypothetical protein OsJ_26223 [Oryza sativa Japonica Group]
Length = 615
Score = 361 bits (926), Expect = 4e-97, Method: Compositional matrix adjust.
Identities = 201/320 (62%), Positives = 232/320 (72%), Gaps = 26/320 (8%)
Query: 37 SKLYDHYSFKPPPSLSPKPENPNPTLNPNKNFKKKSKPQYRPPSSLDAPKK--KYTDLPF 94
S L D Y F PP SL+P + + + ++ KP YRPPSSLD + +DLPF
Sbjct: 23 SGLLDRYGFVPPASLTPH----SASDDGGAKKRRPKKPPYRPPSSLDRGGRPAARSDLPF 78
Query: 95 DFRYSYTETNQNVRPIGLREPKYSPFGPGRLEREWTGVCAPAADPKVKSAEEGAEDPNLE 154
DFR+SYTE++ +PIGLREPK A A DP + E E E
Sbjct: 79 DFRFSYTESSPGEKPIGLREPKVRD--------------AQAEDPAPAAKRELEEARRRE 124
Query: 155 EKRILVRERIQGEPLTNAERKALVEKCHRNRTKRQINLGRDGLTHNMLNDIHNHWKHAEA 214
+R+L GEPLT AER LV KC ++RTK+QINLGRDGLTHNMLNDIHNHWK+ EA
Sbjct: 125 RERVL------GEPLTPAERAFLVSKCQKSRTKKQINLGRDGLTHNMLNDIHNHWKNDEA 178
Query: 215 VRIKCLGVPTVDMKNVCFQLEDKTFGKIIFRHGGTLVLYRGRNYNPKKRPVIPLMLWRPH 274
VR+KCLGVPTVDM+NVC QLEDKT G II RHGG L+LYRGR+YNPKKRPVIPLMLW+P
Sbjct: 179 VRVKCLGVPTVDMQNVCHQLEDKTGGLIIHRHGGQLILYRGRHYNPKKRPVIPLMLWKPA 238
Query: 275 EPVYPKLIKTTIEGLSIEETKEMRKRGLAVPVLTKLAKNGYYGSLVPMVRDAFLVSELVR 334
EPVYP+LIKTTIEGL++EETKEMRK+GL VPVLTKLAKNGYY SLVPMVRDAFL ELVR
Sbjct: 239 EPVYPRLIKTTIEGLTVEETKEMRKKGLYVPVLTKLAKNGYYASLVPMVRDAFLTDELVR 298
Query: 335 IDCQGLERSDYKKIGCKLRS 354
ID +GL +SDY+KIG KLR
Sbjct: 299 IDSKGLPKSDYRKIGVKLRD 318
Score = 288 bits (736), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 134/162 (82%), Positives = 147/162 (90%)
Query: 193 GRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIFRHGGTLVL 252
GRDGLTHNMLNDIHNHWK+ EAVR+KCLGVPTVDM+NVC QLEDKT G II RHGG L+L
Sbjct: 368 GRDGLTHNMLNDIHNHWKNDEAVRVKCLGVPTVDMQNVCHQLEDKTGGLIIHRHGGQLIL 427
Query: 253 YRGRNYNPKKRPVIPLMLWRPHEPVYPKLIKTTIEGLSIEETKEMRKRGLAVPVLTKLAK 312
YRGR+YNPKKRPVIPLMLW+P EPVYP+LIKTTIEGL++EETKEMRK+GL VPVLTKLAK
Sbjct: 428 YRGRHYNPKKRPVIPLMLWKPAEPVYPRLIKTTIEGLTVEETKEMRKKGLYVPVLTKLAK 487
Query: 313 NGYYGSLVPMVRDAFLVSELVRIDCQGLERSDYKKIGCKLRS 354
NGYY SLVPMVRDAFL ELVRID +GL +SDY+KIG KLR
Sbjct: 488 NGYYASLVPMVRDAFLTDELVRIDSKGLPKSDYRKIGVKLRD 529
>gi|225461009|ref|XP_002278505.1| PREDICTED: CRS2-associated factor 2, mitochondrial-like [Vitis
vinifera]
Length = 452
Score = 316 bits (809), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 154/268 (57%), Positives = 193/268 (72%), Gaps = 19/268 (7%)
Query: 90 TDLPFDFRYSYTETNQNVRPIGLREP-KYSPFGPGRLEREWTGVCAPA---ADPKVKSAE 145
+DLPFDFRYSY+E N +V PIG REP ++SPFGP RL+R+WTG APA DP V S +
Sbjct: 80 SDLPFDFRYSYSEANPSVHPIGFREPPRFSPFGPARLDRKWTGTAAPAEEVVDPAVVSEQ 139
Query: 146 EGAEDPNLEEKRILVRERIQGEPLTNAERKALVEKCHRNRTKRQINLGRDGLTHNMLNDI 205
R+ + GEPL+ E LVE+ + RQINLG+ G+THNML+DI
Sbjct: 140 ---------------RKAVLGEPLSEDEIAELVERYRHSDCSRQINLGKGGVTHNMLDDI 184
Query: 206 HNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIFRHGGTLVLYRGRNYNPKKRPV 265
HNHWK AEAVRIKCLGVPT+DM+NVCF LEDK GKII+R+ ++LYRGRNY+PK RPV
Sbjct: 185 HNHWKRAEAVRIKCLGVPTLDMENVCFHLEDKCGGKIIYRNINIILLYRGRNYDPKNRPV 244
Query: 266 IPLMLWRPHEPVYPKLIKTTIEGLSIEETKEMRKRGLAVPVLTKLAKNGYYGSLVPMVRD 325
+PLMLW+P+ P+YPKL+K +GL+ EETKEMR RGL +P + KL KNG Y ++V VR+
Sbjct: 245 VPLMLWKPYAPIYPKLVKPVADGLTFEETKEMRNRGLNLPPVMKLTKNGVYVNVVERVRE 304
Query: 326 AFLVSELVRIDCQGLERSDYKKIGCKLR 353
AF E+VR+DC + SD K+IG KLR
Sbjct: 305 AFRSEEVVRLDCTHVGSSDCKRIGVKLR 332
>gi|224124340|ref|XP_002319307.1| predicted protein [Populus trichocarpa]
gi|222857683|gb|EEE95230.1| predicted protein [Populus trichocarpa]
Length = 354
Score = 314 bits (804), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 167/317 (52%), Positives = 211/317 (66%), Gaps = 34/317 (10%)
Query: 44 SFKPPPSLS--PKPEN---PNPTLNPNKNFKKKSKPQYRPPSSLDAPKKKYTDLPFDFRY 98
+ PP SL+ PKP+N P T +PN + K K +DL FDFRY
Sbjct: 36 QYDPPFSLTKKPKPKNTTEPKETPDPNNHPKLPVK----------------SDLAFDFRY 79
Query: 99 SYTETNQNVRPIGLREPK-YSPFGPGRLEREWTGVCAPAADPKVKSAEEGAEDPNLEEKR 157
SY+E+N + PIG REPK +SPFGPGRL+R+WTG AP + E D +EE
Sbjct: 80 SYSESNPAIEPIGYREPKRFSPFGPGRLDRKWTGTAAP-------TQLETDMDKLMEE-- 130
Query: 158 ILVRERIQGEPLTNAERKALVEKCHRNRTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRI 217
R R+ G+PLT E LVE+ + RQINLG+ G+THNML+DIHNHWK AEAVRI
Sbjct: 131 ---RNRVLGDPLTEEEVAELVERYRHSDCSRQINLGKGGVTHNMLDDIHNHWKRAEAVRI 187
Query: 218 KCLGVPTVDMKNVCFQLEDKTFGKIIFRHGGTLVLYRGRNYNPKKRPVIPLMLWRPHEPV 277
KCLGVPT+DM NVCF LEDK+ GK+++R+ L+LYRGRNY+P+ RPVIPLMLW+P+ P+
Sbjct: 188 KCLGVPTLDMDNVCFHLEDKSGGKVVYRNINILLLYRGRNYDPENRPVIPLMLWKPYAPI 247
Query: 278 YPKLIKTTIEGLSIEETKEMRKRGLAVPVLTKLAKNGYYGSLVPMVRDAFLVSELVRIDC 337
YPKL+K +GL+ EETKEMR RGL L KL +NG Y ++V VRDAF E+VR+DC
Sbjct: 248 YPKLVKNVADGLTFEETKEMRNRGLNSLPLMKLTRNGVYVNVVDRVRDAFETEEVVRLDC 307
Query: 338 QGLERSDYKKIGCKLRS 354
+ + SD KKIG KL+
Sbjct: 308 KHVGMSDCKKIGVKLKD 324
>gi|297737420|emb|CBI26621.3| unnamed protein product [Vitis vinifera]
Length = 343
Score = 313 bits (802), Expect = 8e-83, Method: Compositional matrix adjust.
Identities = 154/269 (57%), Positives = 193/269 (71%), Gaps = 19/269 (7%)
Query: 90 TDLPFDFRYSYTETNQNVRPIGLREP-KYSPFGPGRLEREWTGVCAPA---ADPKVKSAE 145
+DLPFDFRYSY+E N +V PIG REP ++SPFGP RL+R+WTG APA DP V S +
Sbjct: 61 SDLPFDFRYSYSEANPSVHPIGFREPPRFSPFGPARLDRKWTGTAAPAEEVVDPAVVSEQ 120
Query: 146 EGAEDPNLEEKRILVRERIQGEPLTNAERKALVEKCHRNRTKRQINLGRDGLTHNMLNDI 205
R+ + GEPL+ E LVE+ + RQINLG+ G+THNML+DI
Sbjct: 121 ---------------RKAVLGEPLSEDEIAELVERYRHSDCSRQINLGKGGVTHNMLDDI 165
Query: 206 HNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIFRHGGTLVLYRGRNYNPKKRPV 265
HNHWK AEAVRIKCLGVPT+DM+NVCF LEDK GKII+R+ ++LYRGRNY+PK RPV
Sbjct: 166 HNHWKRAEAVRIKCLGVPTLDMENVCFHLEDKCGGKIIYRNINIILLYRGRNYDPKNRPV 225
Query: 266 IPLMLWRPHEPVYPKLIKTTIEGLSIEETKEMRKRGLAVPVLTKLAKNGYYGSLVPMVRD 325
+PLMLW+P+ P+YPKL+K +GL+ EETKEMR RGL +P + KL KNG Y ++V VR+
Sbjct: 226 VPLMLWKPYAPIYPKLVKPVADGLTFEETKEMRNRGLNLPPVMKLTKNGVYVNVVERVRE 285
Query: 326 AFLVSELVRIDCQGLERSDYKKIGCKLRS 354
AF E+VR+DC + SD K+IG KLR
Sbjct: 286 AFRSEEVVRLDCTHVGSSDCKRIGVKLRD 314
>gi|242080803|ref|XP_002445170.1| hypothetical protein SORBIDRAFT_07g005220 [Sorghum bicolor]
gi|241941520|gb|EES14665.1| hypothetical protein SORBIDRAFT_07g005220 [Sorghum bicolor]
Length = 353
Score = 313 bits (801), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 154/267 (57%), Positives = 191/267 (71%), Gaps = 14/267 (5%)
Query: 89 YTDLPFDFRYSYTETNQNVRPIGLREP-KYSPFGPGRLEREWTGVCAPAADPKVKSAEEG 147
++DLPFDFRYSY+ET+ RPIG REP ++SPFGPGRL+R W G A
Sbjct: 77 HSDLPFDFRYSYSETDPAWRPIGFREPTRFSPFGPGRLDRPWDGAAAARV---------- 126
Query: 148 AEDPNLEEKRILVRERIQGEPLTNAERKALVEKCHRNRTKRQINLGRDGLTHNMLNDIHN 207
ED + +E+ RE + GEPL+ E ALVEK + RQINLG+ G+THNML+DIHN
Sbjct: 127 GEDASGDERS---REEVLGEPLSEEEVAALVEKYRHSDCSRQINLGKGGVTHNMLDDIHN 183
Query: 208 HWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIFRHGGTLVLYRGRNYNPKKRPVIP 267
HWK AEAVRIKCLGVPT+DM N+CF LEDKT GK+I+R ++LYRGRNY+PK+RP IP
Sbjct: 184 HWKRAEAVRIKCLGVPTLDMDNICFHLEDKTGGKVIYRSINIIILYRGRNYDPKRRPGIP 243
Query: 268 LMLWRPHEPVYPKLIKTTIEGLSIEETKEMRKRGLAVPVLTKLAKNGYYGSLVPMVRDAF 327
LMLW+P P+YPKL++ EGL+ EETKE+R RGL P LTKL +NG Y ++V VR+AF
Sbjct: 244 LMLWKPLAPIYPKLVQNVAEGLTFEETKELRNRGLNSPALTKLTRNGVYVNVVDKVREAF 303
Query: 328 LVSELVRIDCQGLERSDYKKIGCKLRS 354
E+VR+DC + SD KKIG KLR
Sbjct: 304 KTVEVVRLDCTHVGTSDCKKIGVKLRD 330
>gi|449468496|ref|XP_004151957.1| PREDICTED: CRS2-associated factor 2, mitochondrial-like [Cucumis
sativus]
gi|449489970|ref|XP_004158472.1| PREDICTED: CRS2-associated factor 2, mitochondrial-like [Cucumis
sativus]
Length = 358
Score = 312 bits (799), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 160/271 (59%), Positives = 193/271 (71%), Gaps = 15/271 (5%)
Query: 85 PKKKYTDLPFDFRYSYTETNQNVRPIGLRE-PKYSPFGPGRLEREWTGVCAPAADPKVKS 143
P K Y LPFDF YSY+ETN V PIG RE PK+SPFGPGRL+R+WTG AP S
Sbjct: 73 PLKSY--LPFDFFYSYSETNPLVSPIGYRESPKFSPFGPGRLDRKWTGTSAP-------S 123
Query: 144 AEEGAEDPNLEEKRILVRERIQGEPLTNAERKALVEKCHRNRTKRQINLGRDGLTHNMLN 203
A E + LEE R+RI G+PL + E LVE+ + RQINLG+ G+THNML+
Sbjct: 124 AVEVNINEVLEE-----RKRILGDPLLDEEVAELVEQYRHSDCSRQINLGKGGVTHNMLD 178
Query: 204 DIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIFRHGGTLVLYRGRNYNPKKR 263
DIHNHWK AEAVRIKCLGVPT+DM N+CF LEDK+ GKII+RH L+LYRGRNY+PK R
Sbjct: 179 DIHNHWKRAEAVRIKCLGVPTLDMDNICFHLEDKSGGKIIYRHINILLLYRGRNYDPKNR 238
Query: 264 PVIPLMLWRPHEPVYPKLIKTTIEGLSIEETKEMRKRGLAVPVLTKLAKNGYYGSLVPMV 323
P IPLMLW+P+ P+YPKL+K + LS +ETKEMR RGL P L KL +NG Y ++V V
Sbjct: 239 PAIPLMLWKPYAPIYPKLVKNVADDLSFDETKEMRSRGLNSPPLMKLTRNGVYVNVVDRV 298
Query: 324 RDAFLVSELVRIDCQGLERSDYKKIGCKLRS 354
R+AF E+VR+DC + SD K+IG KLR
Sbjct: 299 REAFKFEEVVRLDCTHVGSSDCKQIGVKLRD 329
>gi|15240416|ref|NP_200300.1| CRS2-associated factor 2 [Arabidopsis thaliana]
gi|75170294|sp|Q9FFU1.1|CAF2M_ARATH RecName: Full=CRS2-associated factor 2, mitochondrial; Flags:
Precursor
gi|9758269|dbj|BAB08768.1| unnamed protein product [Arabidopsis thaliana]
gi|332009170|gb|AED96553.1| CRS2-associated factor 2 [Arabidopsis thaliana]
Length = 358
Score = 310 bits (793), Expect = 8e-82, Method: Compositional matrix adjust.
Identities = 149/265 (56%), Positives = 191/265 (72%), Gaps = 13/265 (4%)
Query: 90 TDLPFDFRYSYTETNQNVRPIGLREPK-YSPFGPGRLEREWTGVCAPAADPKVKSAEEGA 148
+DLPFDFRYSY+ETN + PIG REPK +SPFGPGRL+R+WTG A A+ P++ ++
Sbjct: 75 SDLPFDFRYSYSETNPEIEPIGFREPKRFSPFGPGRLDRKWTGTTALAS-PEIDQSQWVE 133
Query: 149 EDPNLEEKRILVRERIQGEPLTNAERKALVEKCHRNRTKRQINLGRDGLTHNMLNDIHNH 208
E R R+ GE LT E L+E+ + RQINLG+ G+THNM++DIHNH
Sbjct: 134 E-----------RARVLGETLTEDEVTELIERYRHSDCTRQINLGKGGVTHNMIDDIHNH 182
Query: 209 WKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIFRHGGTLVLYRGRNYNPKKRPVIPL 268
WK AEAVRIKCLGVPT+DM N+CF LE+K+ GKI++R+ LVLYRGRNY+PK RP+IPL
Sbjct: 183 WKKAEAVRIKCLGVPTLDMDNICFHLEEKSGGKIVYRNINILVLYRGRNYDPKSRPIIPL 242
Query: 269 MLWRPHEPVYPKLIKTTIEGLSIEETKEMRKRGLAVPVLTKLAKNGYYGSLVPMVRDAFL 328
MLW+PH P+YP+L+K +GL EETKEMR RGL P L KL +NG Y ++V VR+ F
Sbjct: 243 MLWKPHPPIYPRLVKNVADGLEFEETKEMRNRGLHSPALMKLTRNGVYVNVVGRVREEFE 302
Query: 329 VSELVRIDCQGLERSDYKKIGCKLR 353
E+VR+DC + SD K+IG KL+
Sbjct: 303 TEEIVRLDCTHVGMSDCKRIGVKLK 327
>gi|255563935|ref|XP_002522967.1| conserved hypothetical protein [Ricinus communis]
gi|223537779|gb|EEF39397.1| conserved hypothetical protein [Ricinus communis]
Length = 409
Score = 309 bits (791), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 179/341 (52%), Positives = 222/341 (65%), Gaps = 35/341 (10%)
Query: 15 SQPFTLLTCCLSATAANTTNNSSKLYDHYSFKPPPSLSPKPENPN-PTLNPNKNFKKKSK 73
S PF T LS T S LYD PP +L+ KP+ PT P N
Sbjct: 62 SYPFNYFTYFLSHTL------SEDLYD-----PPFTLASKPKAKKAPTNQPGSNENPNKD 110
Query: 74 PQYRPPSSLDAPKKKYTDLPFDFRYSYTETNQNVRPIGLREPK-YSPFGPGRLEREWTGV 132
P+ P K +DLPFDFRYSY+E++ ++PIG REPK +SPFGPGRL+R+WTGV
Sbjct: 111 PK--------LPLK--SDLPFDFRYSYSESDSAIQPIGYREPKRFSPFGPGRLDRKWTGV 160
Query: 133 CAPAADPKVKSAEEGAEDPNLEEKRILVRERIQGEPLTNAERKALVEKCHRNRTKRQINL 192
AP E + +EE+R R+ G+PLT E + LVE+ + RQINL
Sbjct: 161 AAPVQ-------SEVDMEIVMEERR-----RVLGDPLTEEEVEELVERYRHSDCSRQINL 208
Query: 193 GRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIFRHGGTLVL 252
G+ G+THNML+DIHNHWK AEAVRIKCLGVPT+DM NVCF LEDK+ GKII+RH L+L
Sbjct: 209 GKGGVTHNMLDDIHNHWKKAEAVRIKCLGVPTLDMDNVCFHLEDKSGGKIIYRHINILLL 268
Query: 253 YRGRNYNPKKRPVIPLMLWRPHEPVYPKLIKTTIEGLSIEETKEMRKRGLAVPVLTKLAK 312
YRGRNY+PK RPVIP+MLW+P+ P++PKL+K +GLS EETKE+R RGL P L KL +
Sbjct: 269 YRGRNYDPKNRPVIPIMLWKPYAPIFPKLVKNVADGLSFEETKEIRNRGLNSPALMKLTR 328
Query: 313 NGYYGSLVPMVRDAFLVSELVRIDCQGLERSDYKKIGCKLR 353
NG Y +V VR+AF E+VR+DC + SD KKIG KLR
Sbjct: 329 NGVYVYVVERVREAFQTEEVVRLDCTHVGSSDCKKIGVKLR 369
>gi|226530577|ref|NP_001147995.1| LOC100281604 [Zea mays]
gi|195615022|gb|ACG29341.1| CRS2-associated factor 1 [Zea mays]
Length = 362
Score = 307 bits (787), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 150/267 (56%), Positives = 190/267 (71%), Gaps = 14/267 (5%)
Query: 89 YTDLPFDFRYSYTETNQNVRPIGLREP-KYSPFGPGRLEREWTGVCAPAADPKVKSAEEG 147
++DLPFDFRYSY+ET+ RPIG REP ++SPFGPGRL+R W G A
Sbjct: 73 HSDLPFDFRYSYSETDPTWRPIGFREPTRFSPFGPGRLDRPWDGTAAARV---------- 122
Query: 148 AEDPNLEEKRILVRERIQGEPLTNAERKALVEKCHRNRTKRQINLGRDGLTHNMLNDIHN 207
+D + +E+ RE + GEPL+ E ALVEK + RQINLG+ G+THNML+DIHN
Sbjct: 123 GDDASGDERS---REEVLGEPLSEEEVAALVEKYRHSDCSRQINLGKGGVTHNMLDDIHN 179
Query: 208 HWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIFRHGGTLVLYRGRNYNPKKRPVIP 267
HWK AEAVRIKCLGVPT+DM N+CF LEDKT GK++ R ++LYRGRNY+P+KRP +P
Sbjct: 180 HWKRAEAVRIKCLGVPTLDMDNICFHLEDKTGGKVVSRSINIIILYRGRNYDPQKRPGVP 239
Query: 268 LMLWRPHEPVYPKLIKTTIEGLSIEETKEMRKRGLAVPVLTKLAKNGYYGSLVPMVRDAF 327
LMLW+P P+YPKL++ EGL+ EETKE+R RGL P LTKL +NG Y ++V VR+AF
Sbjct: 240 LMLWKPLAPIYPKLVQNVAEGLTFEETKELRNRGLNSPPLTKLTRNGVYVNVVDKVREAF 299
Query: 328 LVSELVRIDCQGLERSDYKKIGCKLRS 354
E+VR+DC + +D KKIG KLR
Sbjct: 300 KTVEVVRLDCTHVGTTDCKKIGVKLRD 326
>gi|238014734|gb|ACR38402.1| unknown [Zea mays]
gi|413921148|gb|AFW61080.1| CRS2-associated factor 1 [Zea mays]
Length = 362
Score = 306 bits (785), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 150/267 (56%), Positives = 189/267 (70%), Gaps = 14/267 (5%)
Query: 89 YTDLPFDFRYSYTETNQNVRPIGLREP-KYSPFGPGRLEREWTGVCAPAADPKVKSAEEG 147
++DLPFDFRYSY+ET+ RPIG REP ++SPFGPGRL+R W G A +V G
Sbjct: 73 HSDLPFDFRYSYSETDPTWRPIGFREPTRFSPFGPGRLDRPWDGTAAA----RVGDYASG 128
Query: 148 AEDPNLEEKRILVRERIQGEPLTNAERKALVEKCHRNRTKRQINLGRDGLTHNMLNDIHN 207
E +RE + GEPL+ E ALVE+ + RQINLG+ G+THNML+DIHN
Sbjct: 129 DER---------IREEVLGEPLSEEEVAALVERYRHSDCSRQINLGKGGVTHNMLDDIHN 179
Query: 208 HWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIFRHGGTLVLYRGRNYNPKKRPVIP 267
HWK AEAVRIKCLGVPT+DM N+CF LEDKT GK++ R ++LYRGRNY+P+KRP +P
Sbjct: 180 HWKRAEAVRIKCLGVPTLDMDNICFHLEDKTGGKVVSRSINIIILYRGRNYDPQKRPGVP 239
Query: 268 LMLWRPHEPVYPKLIKTTIEGLSIEETKEMRKRGLAVPVLTKLAKNGYYGSLVPMVRDAF 327
LMLW+P P+YPKL++ EGL+ EETKE+R RGL P LTKL +NG Y ++V VR+AF
Sbjct: 240 LMLWKPLAPIYPKLVQNVAEGLTFEETKELRNRGLNSPPLTKLTRNGVYVNVVDKVREAF 299
Query: 328 LVSELVRIDCQGLERSDYKKIGCKLRS 354
E+VR+DC + +D KKIG KLR
Sbjct: 300 KTVEVVRLDCTHVGTTDCKKIGVKLRD 326
>gi|297792957|ref|XP_002864363.1| hypothetical protein ARALYDRAFT_331830 [Arabidopsis lyrata subsp.
lyrata]
gi|297310198|gb|EFH40622.1| hypothetical protein ARALYDRAFT_331830 [Arabidopsis lyrata subsp.
lyrata]
Length = 362
Score = 300 bits (768), Expect = 7e-79, Method: Compositional matrix adjust.
Identities = 149/266 (56%), Positives = 191/266 (71%), Gaps = 13/266 (4%)
Query: 90 TDLPFDFRYSYTETNQNVRPIGLREPK-YSPFGPGRLEREWTGVCAPAADPKVKSAEEGA 148
+DLPFDFRYSY+ETN + PIG REPK +SPFGPGRL+R+WTG A P++ ++
Sbjct: 71 SDLPFDFRYSYSETNPEIEPIGFREPKRFSPFGPGRLDRKWTGTSA-LVSPEIDQSQWVE 129
Query: 149 EDPNLEEKRILVRERIQGEPLTNAERKALVEKCHRNRTKRQINLGRDGLTHNMLNDIHNH 208
E R R+ GEPLT E LVE+ + RQINLG+ G+THNM++DIHNH
Sbjct: 130 E-----------RARVLGEPLTEEEVTELVERYRHSDCSRQINLGKGGVTHNMIDDIHNH 178
Query: 209 WKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIFRHGGTLVLYRGRNYNPKKRPVIPL 268
WK AEAVRIKCLGVPT+DM N+CF LE+K+ GKI++RH LVLYRGRNY+PK RP+IPL
Sbjct: 179 WKKAEAVRIKCLGVPTLDMDNICFHLEEKSGGKIVYRHINILVLYRGRNYDPKSRPIIPL 238
Query: 269 MLWRPHEPVYPKLIKTTIEGLSIEETKEMRKRGLAVPVLTKLAKNGYYGSLVPMVRDAFL 328
MLW+P+ P+YP+L+K +GL+ EETKEMR RG+ P L KL +NG Y ++V VR+ F
Sbjct: 239 MLWKPYPPIYPRLVKNVADGLTFEETKEMRNRGIHSPALMKLTRNGVYVNVVGRVREEFE 298
Query: 329 VSELVRIDCQGLERSDYKKIGCKLRS 354
E+VR+DC + SD K+IG KL+
Sbjct: 299 TEEIVRLDCTHVGMSDCKRIGVKLKD 324
>gi|356496030|ref|XP_003516873.1| PREDICTED: CRS2-associated factor 2, mitochondrial-like [Glycine
max]
Length = 358
Score = 298 bits (762), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 167/316 (52%), Positives = 212/316 (67%), Gaps = 17/316 (5%)
Query: 41 DHYSFKPPPSLSPKPENPNPTLNPNKNFKKKSKPQYRPPSSLDAPKKKY-TDLPFDFRYS 99
DH + PP S SPKP + + K K S + P+ APK + ++LPFDFRYS
Sbjct: 27 DH-QYDPPFSPSPKPYYKSKKNHAEKKKKNNS--ENGDPNKNGAPKLPFKSNLPFDFRYS 83
Query: 100 YTETNQNVRPIGLRE-PKYSPFGPGRLEREWTGVCAPAADPKVKSAEEGAEDPNLEEKRI 158
Y+E++ +V PI RE PK+SPFGPGR++R+WTGV AP +G D E+
Sbjct: 84 YSESDPSVGPISFRESPKFSPFGPGRIDRKWTGVSAPV---------QGEPD---RERVE 131
Query: 159 LVRERIQGEPLTNAERKALVEKCHRNRTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIK 218
R RI GEPL+ E L+E+ + RQINLG+ G+THNML DIHNHWK AEAVRIK
Sbjct: 132 EERNRILGEPLSEVEVAELIERYRHSDCARQINLGKGGVTHNMLGDIHNHWKKAEAVRIK 191
Query: 219 CLGVPTVDMKNVCFQLEDKTFGKIIFRHGGTLVLYRGRNYNPKKRPVIPLMLWRPHEPVY 278
CLGVPT+DM NVCF LEDK+ GK+I+R+ L+LYRGRNY+ K PVIPLMLW+P+ P+Y
Sbjct: 192 CLGVPTLDMDNVCFHLEDKSGGKVIYRNINILLLYRGRNYDTKNCPVIPLMLWKPYAPIY 251
Query: 279 PKLIKTTIEGLSIEETKEMRKRGLAVPVLTKLAKNGYYGSLVPMVRDAFLVSELVRIDCQ 338
P+L+K IEGL+ EETKEMRK GL L KL +NG Y ++V VR+AF E+V++DC
Sbjct: 252 PRLVKNVIEGLTYEETKEMRKSGLNSDPLLKLTRNGVYVNVVERVREAFKTQEVVKLDCI 311
Query: 339 GLERSDYKKIGCKLRS 354
+ SD KKIG KLR
Sbjct: 312 HVGTSDCKKIGVKLRD 327
>gi|356530475|ref|XP_003533806.1| PREDICTED: CRS2-associated factor 2, mitochondrial-like [Glycine
max]
Length = 388
Score = 296 bits (758), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 166/316 (52%), Positives = 211/316 (66%), Gaps = 17/316 (5%)
Query: 41 DHYSFKPPPSLSPKPENPNPTLNPNKNFKKKSKPQYRPPSSLDAPKKKY-TDLPFDFRYS 99
DH + PP S SPKP + + K K S + P+ APK + ++LPFDFRYS
Sbjct: 27 DH-QYDPPFSPSPKPYYKSKKNHAEKKKKNNS--ENGDPNKNGAPKLPFKSNLPFDFRYS 83
Query: 100 YTETNQNVRPIGLRE-PKYSPFGPGRLEREWTGVCAPAADPKVKSAEEGAEDPNLEEKRI 158
Y+E++ +V PI RE PK+SPFGPGR++R+WTGV AP +G D E+
Sbjct: 84 YSESDPSVGPISFRESPKFSPFGPGRIDRKWTGVSAPV---------QGEPD---RERVE 131
Query: 159 LVRERIQGEPLTNAERKALVEKCHRNRTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIK 218
R RI GEPL+ E L+E+ + RQINLG+ G+THNML DIHNHWK AE VRIK
Sbjct: 132 EERNRILGEPLSEVEVAELIERYRHSDCARQINLGKGGVTHNMLGDIHNHWKKAEVVRIK 191
Query: 219 CLGVPTVDMKNVCFQLEDKTFGKIIFRHGGTLVLYRGRNYNPKKRPVIPLMLWRPHEPVY 278
CLGVPT+DM NVCF LEDK+ GK+I+R+ L+LYRGRNY+ K PVIPLMLW+P+ P+Y
Sbjct: 192 CLGVPTLDMDNVCFHLEDKSGGKVIYRNINILLLYRGRNYDTKNCPVIPLMLWKPYAPIY 251
Query: 279 PKLIKTTIEGLSIEETKEMRKRGLAVPVLTKLAKNGYYGSLVPMVRDAFLVSELVRIDCQ 338
P+L+K IEGL+ EETKEMRK GL L KL +NG Y ++V VR+AF E+V++DC
Sbjct: 252 PRLVKNVIEGLTYEETKEMRKSGLNSDPLLKLTRNGVYVNVVERVREAFKTQEVVKLDCI 311
Query: 339 GLERSDYKKIGCKLRS 354
+ SD KKIG KLR
Sbjct: 312 HVGTSDCKKIGVKLRD 327
>gi|357144748|ref|XP_003573400.1| PREDICTED: CRS2-associated factor 2, mitochondrial-like
[Brachypodium distachyon]
Length = 365
Score = 296 bits (757), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 152/267 (56%), Positives = 187/267 (70%), Gaps = 9/267 (3%)
Query: 89 YTDLPFDFRYSYTETNQNVRPIGLREP-KYSPFGPGRLEREWTGVCAPAADPKVKSAEEG 147
++DLPFDFRYSY+ET+ RPIG REP ++SPFGPGRL+R W G A AA S
Sbjct: 71 HSDLPFDFRYSYSETDPAWRPIGFREPTRFSPFGPGRLDRPWDGAAAAAARVYGDSEGGD 130
Query: 148 AEDPNLEEKRILVRERIQGEPLTNAERKALVEKCHRNRTKRQINLGRDGLTHNMLNDIHN 207
+ RE + GE L+ AE LVE+ + RQINLG+ G+THNML+DIHN
Sbjct: 131 GGGTS--------REDLLGEALSEAEVSELVERYRHSDCSRQINLGKGGVTHNMLDDIHN 182
Query: 208 HWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIFRHGGTLVLYRGRNYNPKKRPVIP 267
HWK AEAVRIKCLGV T+DM N+CF LEDKT GKII R L+LYRGRNY+PK+RPVIP
Sbjct: 183 HWKRAEAVRIKCLGVATLDMDNICFHLEDKTGGKIIHRSINILILYRGRNYDPKQRPVIP 242
Query: 268 LMLWRPHEPVYPKLIKTTIEGLSIEETKEMRKRGLAVPVLTKLAKNGYYGSLVPMVRDAF 327
LMLW+P P+YPKL+++ EG++ EETKE+R RGL P L KL +NG Y ++V VR+AF
Sbjct: 243 LMLWKPLAPIYPKLVQSVAEGMTFEETKELRNRGLNSPPLMKLTRNGVYVNVVDRVREAF 302
Query: 328 LVSELVRIDCQGLERSDYKKIGCKLRS 354
E+VR+DC + SD KKIG KLR
Sbjct: 303 QTVEVVRLDCTHVGTSDCKKIGVKLRD 329
>gi|143955290|sp|Q0J7J7.2|CAF2M_ORYSJ RecName: Full=CRS2-associated factor 2, mitochondrial; Flags:
Precursor
gi|222640037|gb|EEE68169.1| hypothetical protein OsJ_26288 [Oryza sativa Japonica Group]
Length = 366
Score = 288 bits (737), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 148/271 (54%), Positives = 188/271 (69%), Gaps = 13/271 (4%)
Query: 85 PKKKYTDLPFDFRYSYTETNQNVRPIGLREP-KYSPFGPGRLEREWTGVCAPAADPKVKS 143
P+ +DLPFDFRYSY+ET+ RPIG REP ++SPFGPGRL+R W GV A AA +
Sbjct: 72 PEPASSDLPFDFRYSYSETDPAWRPIGFREPTRFSPFGPGRLDRPWDGVAAAAARGEGAG 131
Query: 144 AEEGAEDPNLEEKRILVRERIQGEPLTNAERKALVEKCHRNRTKRQINLGRDGLTHNMLN 203
A + RE + GEPL E LVE+ + RQINLG+ G+THNM++
Sbjct: 132 AAATS------------REEVLGEPLAEEEVAQLVERYRHSDCSRQINLGKGGVTHNMID 179
Query: 204 DIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIFRHGGTLVLYRGRNYNPKKR 263
DIHNHWK AEAVRIKCLGVPT+DM N+CF LEDKT GK+I+R+ L+LYRGRNY+PK+R
Sbjct: 180 DIHNHWKRAEAVRIKCLGVPTLDMDNICFHLEDKTGGKVIYRNINILILYRGRNYDPKQR 239
Query: 264 PVIPLMLWRPHEPVYPKLIKTTIEGLSIEETKEMRKRGLAVPVLTKLAKNGYYGSLVPMV 323
P IPLMLW+P P+YP+L++ +GL+ E+TKE+R GL L KL +NG Y ++V V
Sbjct: 240 PQIPLMLWKPLAPIYPRLVQNVADGLTFEKTKELRNTGLNSSPLMKLTRNGVYVNVVDRV 299
Query: 324 RDAFLVSELVRIDCQGLERSDYKKIGCKLRS 354
R+AF E+VR+DC + SD KKIG KLR
Sbjct: 300 REAFKTVEVVRLDCSHVGSSDCKKIGVKLRD 330
>gi|115475115|ref|NP_001061154.1| Os08g0188000 [Oryza sativa Japonica Group]
gi|113623123|dbj|BAF23068.1| Os08g0188000, partial [Oryza sativa Japonica Group]
Length = 361
Score = 288 bits (737), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 148/271 (54%), Positives = 188/271 (69%), Gaps = 13/271 (4%)
Query: 85 PKKKYTDLPFDFRYSYTETNQNVRPIGLREP-KYSPFGPGRLEREWTGVCAPAADPKVKS 143
P+ +DLPFDFRYSY+ET+ RPIG REP ++SPFGPGRL+R W GV A AA +
Sbjct: 67 PEPASSDLPFDFRYSYSETDPAWRPIGFREPTRFSPFGPGRLDRPWDGVAAAAARGEGAG 126
Query: 144 AEEGAEDPNLEEKRILVRERIQGEPLTNAERKALVEKCHRNRTKRQINLGRDGLTHNMLN 203
A + RE + GEPL E LVE+ + RQINLG+ G+THNM++
Sbjct: 127 AAATS------------REEVLGEPLAEEEVAQLVERYRHSDCSRQINLGKGGVTHNMID 174
Query: 204 DIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIFRHGGTLVLYRGRNYNPKKR 263
DIHNHWK AEAVRIKCLGVPT+DM N+CF LEDKT GK+I+R+ L+LYRGRNY+PK+R
Sbjct: 175 DIHNHWKRAEAVRIKCLGVPTLDMDNICFHLEDKTGGKVIYRNINILILYRGRNYDPKQR 234
Query: 264 PVIPLMLWRPHEPVYPKLIKTTIEGLSIEETKEMRKRGLAVPVLTKLAKNGYYGSLVPMV 323
P IPLMLW+P P+YP+L++ +GL+ E+TKE+R GL L KL +NG Y ++V V
Sbjct: 235 PQIPLMLWKPLAPIYPRLVQNVADGLTFEKTKELRNTGLNSSPLMKLTRNGVYVNVVDRV 294
Query: 324 RDAFLVSELVRIDCQGLERSDYKKIGCKLRS 354
R+AF E+VR+DC + SD KKIG KLR
Sbjct: 295 REAFKTVEVVRLDCSHVGSSDCKKIGVKLRD 325
>gi|218200589|gb|EEC83016.1| hypothetical protein OsI_28075 [Oryza sativa Indica Group]
Length = 365
Score = 288 bits (737), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 148/271 (54%), Positives = 188/271 (69%), Gaps = 13/271 (4%)
Query: 85 PKKKYTDLPFDFRYSYTETNQNVRPIGLREP-KYSPFGPGRLEREWTGVCAPAADPKVKS 143
P+ +DLPFDFRYSY+ET+ RPIG REP ++SPFGPGRL+R W GV A AA +
Sbjct: 71 PEPASSDLPFDFRYSYSETDPAWRPIGFREPTRFSPFGPGRLDRPWDGVAAAAARGEGAG 130
Query: 144 AEEGAEDPNLEEKRILVRERIQGEPLTNAERKALVEKCHRNRTKRQINLGRDGLTHNMLN 203
A + RE + GEPL E LVE+ + RQINLG+ G+THNM++
Sbjct: 131 AAATS------------REEVLGEPLAEEEVAQLVERYRHSDCSRQINLGKGGVTHNMID 178
Query: 204 DIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIFRHGGTLVLYRGRNYNPKKR 263
DIHNHWK AEAVRIKCLGVPT+DM N+CF LEDKT GK+I+R+ L+LYRGRNY+PK+R
Sbjct: 179 DIHNHWKRAEAVRIKCLGVPTLDMDNICFHLEDKTGGKVIYRNINILILYRGRNYDPKQR 238
Query: 264 PVIPLMLWRPHEPVYPKLIKTTIEGLSIEETKEMRKRGLAVPVLTKLAKNGYYGSLVPMV 323
P IPLMLW+P P+YP+L++ +GL+ E+TKE+R GL L KL +NG Y ++V V
Sbjct: 239 PQIPLMLWKPLAPIYPRLVQNVADGLTFEKTKELRNTGLNSSPLMKLTRNGVYVNVVDRV 298
Query: 324 RDAFLVSELVRIDCQGLERSDYKKIGCKLRS 354
R+AF E+VR+DC + SD KKIG KLR
Sbjct: 299 REAFKTVEVVRLDCSHVGSSDCKKIGVKLRD 329
>gi|255589857|ref|XP_002535109.1| conserved hypothetical protein [Ricinus communis]
gi|223524018|gb|EEF27274.1| conserved hypothetical protein [Ricinus communis]
Length = 748
Score = 273 bits (698), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 144/279 (51%), Positives = 184/279 (65%), Gaps = 21/279 (7%)
Query: 93 PFDFRYSYTETNQNVRPIGLREPKYSPFGPGRLEREWTGVC----------------APA 136
PF+F+YSYTET + +PI LRE +SPFGP + R WTG P
Sbjct: 159 PFEFKYSYTETPK-AKPIKLREAPFSPFGPTTMGRPWTGRAPLPPSKKKLREFDSFKLPP 217
Query: 137 ADPK-VKSAEE-GAEDPNLEEKRILVRERIQGEPLTNAERKALVEKCHRNRTKRQINLGR 194
D K VK ++ G P + + RE I GEPLT E K L+E C + T+RQ+N+GR
Sbjct: 218 PDKKGVKPVQKPGPFLPGAGPRYVYSREEILGEPLTTEEVKILIEGCLK--TRRQLNMGR 275
Query: 195 DGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIFRHGGTLVLYR 254
DGLTHNML++IH HWK +IKC+GV TVDM NVC QLE++T GK+I+R GG + L+R
Sbjct: 276 DGLTHNMLDNIHAHWKRRRVCKIKCMGVCTVDMDNVCQQLEERTGGKVIYRKGGVVYLFR 335
Query: 255 GRNYNPKKRPVIPLMLWRPHEPVYPKLIKTTIEGLSIEETKEMRKRGLAVPVLTKLAKNG 314
GRNYN + RP PLMLW+P PVYP+LIK EGL++EE EMR++G + + KLAKNG
Sbjct: 336 GRNYNYRTRPRFPLMLWKPVTPVYPRLIKRAPEGLTLEEASEMRRKGRKLIPICKLAKNG 395
Query: 315 YYGSLVPMVRDAFLVSELVRIDCQGLERSDYKKIGCKLR 353
Y +LV VR+AF ELVRIDCQG+ SDY+K+G KL+
Sbjct: 396 VYCNLVKEVREAFEECELVRIDCQGVNGSDYRKVGAKLK 434
>gi|297836246|ref|XP_002886005.1| hypothetical protein ARALYDRAFT_480467 [Arabidopsis lyrata subsp.
lyrata]
gi|297331845|gb|EFH62264.1| hypothetical protein ARALYDRAFT_480467 [Arabidopsis lyrata subsp.
lyrata]
Length = 700
Score = 268 bits (686), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 151/322 (46%), Positives = 195/322 (60%), Gaps = 33/322 (10%)
Query: 60 PTLNPNKNFKKKSKPQYRPPSSLDA-PKKKYTD---------LPFDFRYSYTETNQNVRP 109
P PNK K P P LDA P+ K ++ PF+F+YSYTET + V+P
Sbjct: 109 PDSGPNKPKNKPRVPDS--PPQLDAKPEVKLSEDGLSYVINGAPFEFKYSYTETPK-VKP 165
Query: 110 IGLREPKYSPFGPGRLEREWTGVCA-----------------PAADPKVKSAEE-GAEDP 151
+ LREP Y+PFGP + R WTG P VK ++ G P
Sbjct: 166 LKLREPAYAPFGPTTMGRPWTGRAPLPQSQKTPREFDSFRLPPDGKKGVKPVQKPGPFRP 225
Query: 152 NLEEKRILVRERIQGEPLTNAERKALVEKCHRNRTKRQINLGRDGLTHNMLNDIHNHWKH 211
L + + +E I GEPLT E + LV C + T RQ+N+GRDGLTHNMLN+IH+ WK
Sbjct: 226 GLGPRYVYTKEEILGEPLTKEEIRELVTSCLK--TTRQLNMGRDGLTHNMLNNIHDLWKR 283
Query: 212 AEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIFRHGGTLVLYRGRNYNPKKRPVIPLMLW 271
+IKC GV TVDM VC QLE+K GK+I+R GG L L+RGRNYN + RP PLMLW
Sbjct: 284 RRVCKIKCKGVCTVDMDKVCEQLEEKIGGKVIYRRGGVLFLFRGRNYNHRTRPRFPLMLW 343
Query: 272 RPHEPVYPKLIKTTIEGLSIEETKEMRKRGLAVPVLTKLAKNGYYGSLVPMVRDAFLVSE 331
+P PVYP+LI+ EGL+++E EMR++G + + KL KNG Y LV V++AF V E
Sbjct: 344 KPVAPVYPRLIQQVPEGLTLQEATEMRRKGRELMPICKLGKNGVYCDLVKNVKEAFEVCE 403
Query: 332 LVRIDCQGLERSDYKKIGCKLR 353
LVRIDCQG++ SD++KIG KL+
Sbjct: 404 LVRIDCQGMKGSDFRKIGAKLK 425
>gi|413921149|gb|AFW61081.1| hypothetical protein ZEAMMB73_173916 [Zea mays]
Length = 291
Score = 268 bits (686), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 130/225 (57%), Positives = 162/225 (72%), Gaps = 14/225 (6%)
Query: 89 YTDLPFDFRYSYTETNQNVRPIGLREP-KYSPFGPGRLEREWTGVCAPAADPKVKSAEEG 147
++DLPFDFRYSY+ET+ RPIG REP ++SPFGPGRL+R W G A +V G
Sbjct: 73 HSDLPFDFRYSYSETDPTWRPIGFREPTRFSPFGPGRLDRPWDGTAAA----RVGDYASG 128
Query: 148 AEDPNLEEKRILVRERIQGEPLTNAERKALVEKCHRNRTKRQINLGRDGLTHNMLNDIHN 207
E +RE + GEPL+ E ALVE+ + RQINLG+ G+THNML+DIHN
Sbjct: 129 DER---------IREEVLGEPLSEEEVAALVERYRHSDCSRQINLGKGGVTHNMLDDIHN 179
Query: 208 HWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIFRHGGTLVLYRGRNYNPKKRPVIP 267
HWK AEAVRIKCLGVPT+DM N+CF LEDKT GK++ R ++LYRGRNY+P+KRP +P
Sbjct: 180 HWKRAEAVRIKCLGVPTLDMDNICFHLEDKTGGKVVSRSINIIILYRGRNYDPQKRPGVP 239
Query: 268 LMLWRPHEPVYPKLIKTTIEGLSIEETKEMRKRGLAVPVLTKLAK 312
LMLW+P P+YPKL++ EGL+ EETKE+R RGL P LTKL+K
Sbjct: 240 LMLWKPLAPIYPKLVQNVAEGLTFEETKELRNRGLNSPPLTKLSK 284
>gi|356527769|ref|XP_003532480.1| PREDICTED: CRS2-associated factor 1, chloroplastic-like [Glycine
max]
Length = 723
Score = 268 bits (685), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 141/288 (48%), Positives = 185/288 (64%), Gaps = 21/288 (7%)
Query: 93 PFDFRYSYTETNQNVRPIGLREPKYSPFGPGRLEREWTGVCA-PAADPKVKSAEEGAEDP 151
PF+F+YSYTET + V+PI +RE + PFGP + R WTG PA+ K+K + P
Sbjct: 108 PFEFKYSYTETPK-VKPIKMREAPFVPFGPDTMPRPWTGRAPLPASKKKLKEFDSFVLPP 166
Query: 152 NLEE-----------------KRILVRERIQGEPLTNAERKALVEKCHRNRTKRQINLGR 194
++ + + RE I GEPLT E + LV+ C + +RQ+N+GR
Sbjct: 167 PHKKGVKPVQSPGPYLAGTGPRYVKSREEILGEPLTQEEIRDLVKSCMK--AQRQLNIGR 224
Query: 195 DGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIFRHGGTLVLYR 254
DGLTHNML++IH HWK A +I+C GV TVDM NVC QLE++T GKII R GG L L+R
Sbjct: 225 DGLTHNMLDNIHAHWKRRRACKIRCKGVCTVDMDNVCHQLEERTGGKIIHRKGGVLYLFR 284
Query: 255 GRNYNPKKRPVIPLMLWRPHEPVYPKLIKTTIEGLSIEETKEMRKRGLAVPVLTKLAKNG 314
GRNYN K RP PLMLW+P PVYP+L++ EGL++EE +MR++G + + KL KNG
Sbjct: 285 GRNYNYKTRPHFPLMLWKPVPPVYPRLVQRVPEGLTLEEATKMRQKGSTLIPICKLGKNG 344
Query: 315 YYGSLVPMVRDAFLVSELVRIDCQGLERSDYKKIGCKLRSWFRISFLA 362
Y LV VR+AF ELVRI+CQGL +SDY+KIG KLR + L+
Sbjct: 345 VYCDLVKTVREAFEECELVRINCQGLNKSDYRKIGAKLRDLVPCTLLS 392
>gi|357520913|ref|XP_003630745.1| CRS2-associated factor [Medicago truncatula]
gi|355524767|gb|AET05221.1| CRS2-associated factor [Medicago truncatula]
Length = 698
Score = 267 bits (682), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 144/316 (45%), Positives = 191/316 (60%), Gaps = 25/316 (7%)
Query: 69 KKKSKPQYRPPSSL----DAPKKKYTDLPFDFRYSYTETNQNVRPIGLREPKYSPFGPGR 124
K+K KP + P ++ D PF+F+YSYTET ++ +P+ +REP + PFGP
Sbjct: 51 KQKLKPVNKTPENVKISEDGVSYVIEGAPFEFKYSYTETPKS-KPVQMREPPFVPFGPVT 109
Query: 125 LEREWTG-----------------VCAPAADPKVKSAEE-GAEDPNLEEKRILVRERIQG 166
+ R WTG V P VK + G P + ++ RE + G
Sbjct: 110 MPRPWTGRPPLPPSKKKLKEFDSFVLPPPHKKGVKPVQSPGPFLPGTSPRYVMSREEVLG 169
Query: 167 EPLTNAERKALVEKCHRNRTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVD 226
EPLT E LV + + RQ+NLGRDG HNML++IH HWK +IKC+GV TVD
Sbjct: 170 EPLTKEEINELVRSTLK--SSRQLNLGRDGFIHNMLDNIHAHWKRRRVCKIKCIGVCTVD 227
Query: 227 MKNVCFQLEDKTFGKIIFRHGGTLVLYRGRNYNPKKRPVIPLMLWRPHEPVYPKLIKTTI 286
M NVC QLE+KT GK+I+R GG + L+RGRNYN K RP PLMLW+P PVYP+LI+
Sbjct: 228 MDNVCQQLEEKTGGKVIYRRGGVIYLFRGRNYNHKTRPRFPLMLWKPVPPVYPRLIQQVP 287
Query: 287 EGLSIEETKEMRKRGLAVPVLTKLAKNGYYGSLVPMVRDAFLVSELVRIDCQGLERSDYK 346
EGL++EE EMR++G + + KL KNG Y +LV VR+AF ELVR++CQGL +SDY+
Sbjct: 288 EGLTLEEATEMRQKGRTLTPICKLGKNGVYYNLVNNVREAFEECELVRVNCQGLNKSDYR 347
Query: 347 KIGCKLRSWFRISFLA 362
KIG KLR + L+
Sbjct: 348 KIGAKLRDLVPCTLLS 363
Score = 44.3 bits (103), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 39/67 (58%)
Query: 192 LGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIFRHGGTLV 251
LG++G+ +N++N++ ++ E VR+ C G+ D + + +L D ++ ++
Sbjct: 311 LGKNGVYYNLVNNVREAFEECELVRVNCQGLNKSDYRKIGAKLRDLVPCTLLSYENEHIL 370
Query: 252 LYRGRNY 258
++RGRN+
Sbjct: 371 MWRGRNW 377
>gi|449443167|ref|XP_004139352.1| PREDICTED: CRS2-associated factor 1, chloroplastic-like [Cucumis
sativus]
gi|449521361|ref|XP_004167698.1| PREDICTED: CRS2-associated factor 1, chloroplastic-like [Cucumis
sativus]
Length = 745
Score = 265 bits (676), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 155/329 (47%), Positives = 196/329 (59%), Gaps = 29/329 (8%)
Query: 50 SLSPKPENPNPTLNPNKNFKKKSKPQYRPPS-------SLDAPKKKYTDLPFDFRYSYTE 102
S +P P++P+P +K K + P+ R S D PF+F+YSYTE
Sbjct: 110 SKNPNPDSPSPFRQVSKTKKTMNAPEERHIGVEANVSLSEDGVSYVIDGAPFEFKYSYTE 169
Query: 103 TNQNVRPIGLREPKYSPFGPGRLEREWTGVC--------APAAD-----PKVKSAEEGAE 149
T + V+PI LREP Y+PFGP + R WTG P D PK K + +
Sbjct: 170 TPK-VKPIKLREP-YAPFGPTTMSRPWTGRAPLPPSKKKLPEFDSFQLPPKNKKGVKPVQ 227
Query: 150 DPN-----LEEKRILVRERIQGEPLTNAERKALVEKCHRNRTKRQINLGRDGLTHNMLND 204
P K ++ RE I GEPLT E KAL+ C + RQ+N+GRDGLTHNML +
Sbjct: 228 APGPFLAGSGPKYVMSREEILGEPLTKEEIKALIRGCIN--SNRQLNIGRDGLTHNMLEN 285
Query: 205 IHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIFRHGGTLVLYRGRNYNPKKRP 264
IH WK +IKC GV TVDM NV QLE++T GKII+ GG L LYRGRNYN K RP
Sbjct: 286 IHALWKRRRVCKIKCKGVCTVDMDNVKQQLEERTGGKIIYSRGGALYLYRGRNYNYKTRP 345
Query: 265 VIPLMLWRPHEPVYPKLIKTTIEGLSIEETKEMRKRGLAVPVLTKLAKNGYYGSLVPMVR 324
PLMLW+P PVYP+L+K +GL++EE EMRK+G + + KL KNG Y +LV VR
Sbjct: 346 RFPLMLWKPAAPVYPRLVKHIPDGLTLEEVTEMRKKGRKLIPICKLGKNGVYSALVKHVR 405
Query: 325 DAFLVSELVRIDCQGLERSDYKKIGCKLR 353
+AF ELVRI+CQGL SD++KIG KL+
Sbjct: 406 EAFEECELVRINCQGLNGSDFRKIGAKLK 434
>gi|18399222|ref|NP_565462.1| CRS2-associated factor 1 [Arabidopsis thaliana]
gi|75266026|sp|Q9SL79.2|CAF1P_ARATH RecName: Full=CRS2-associated factor 1, chloroplastic; AltName:
Full=Chloroplastic group IIA intron splicing facilitator
CRS2-associated factor 1; Flags: Precursor
gi|15028051|gb|AAK76556.1| unknown protein [Arabidopsis thaliana]
gi|20197570|gb|AAD24394.2| expressed protein [Arabidopsis thaliana]
gi|28393847|gb|AAO42331.1| unknown protein [Arabidopsis thaliana]
gi|330251862|gb|AEC06956.1| CRS2-associated factor 1 [Arabidopsis thaliana]
Length = 701
Score = 264 bits (675), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 137/279 (49%), Positives = 179/279 (64%), Gaps = 21/279 (7%)
Query: 93 PFDFRYSYTETNQNVRPIGLREPKYSPFGPGRLEREWTGVCA-----------------P 135
PF+F+YSYTET + V+P+ LREP Y+PFGP + R WTG P
Sbjct: 150 PFEFKYSYTETPK-VKPLKLREPAYAPFGPTTMGRPWTGRAPLPQSQKTPREFDSFRLPP 208
Query: 136 AADPKVKSAEE-GAEDPNLEEKRILVRERIQGEPLTNAERKALVEKCHRNRTKRQINLGR 194
+K ++ G P + + + +E I GEPLT E + LV C + T RQ+N+GR
Sbjct: 209 VGKKGLKPVQKPGPFRPGVGPRYVYSKEEILGEPLTKEEVRELVTSCLK--TTRQLNMGR 266
Query: 195 DGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIFRHGGTLVLYR 254
DGLTHNMLN+IH+ WK +IKC GV TVDM NVC QLE+K GK+I+R GG L L+R
Sbjct: 267 DGLTHNMLNNIHDLWKRRRVCKIKCKGVCTVDMDNVCEQLEEKIGGKVIYRRGGVLFLFR 326
Query: 255 GRNYNPKKRPVIPLMLWRPHEPVYPKLIKTTIEGLSIEETKEMRKRGLAVPVLTKLAKNG 314
GRNYN + RP PLMLW+P PVYP+LI+ EGL+ +E MR++G + + KL KNG
Sbjct: 327 GRNYNHRTRPRFPLMLWKPVAPVYPRLIQQVPEGLTRQEATNMRRKGRELMPICKLGKNG 386
Query: 315 YYGSLVPMVRDAFLVSELVRIDCQGLERSDYKKIGCKLR 353
Y LV V++AF V ELVRIDCQG++ SD++KIG KL+
Sbjct: 387 VYCDLVKNVKEAFEVCELVRIDCQGMKGSDFRKIGAKLK 425
>gi|297738777|emb|CBI28022.3| unnamed protein product [Vitis vinifera]
Length = 723
Score = 262 bits (669), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 142/281 (50%), Positives = 178/281 (63%), Gaps = 21/281 (7%)
Query: 92 LPFDFRYSYTETNQNVRPIGLREPKYSPFGPGRLEREWTGVCA----------------- 134
+PF+ RYSYTET + V+PI LREP + PFGP + R WTG
Sbjct: 150 VPFELRYSYTETPK-VKPIALREPPFLPFGPDTMPRPWTGRAPLPPSKKKLKEFDSFQLP 208
Query: 135 PAADPKVKSAEE-GAEDPNLEEKRILVRERIQGEPLTNAERKALVEKCHRNRTKRQINLG 193
P +VK + G P + + RE I GEPLT E K LV+ C + +KRQ+N+G
Sbjct: 209 PPGKKRVKPVQAPGPFLPGSGPRYVRSREEILGEPLTEEEIKELVQGCVK--SKRQLNMG 266
Query: 194 RDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIFRHGGTLVLY 253
RDGLTHNML++IH HWK +IKC GV TVDM NV QLE+KT GK+I+ GG L L+
Sbjct: 267 RDGLTHNMLDNIHAHWKRRRVCKIKCKGVCTVDMDNVRQQLEEKTGGKVIYGKGGVLFLF 326
Query: 254 RGRNYNPKKRPVIPLMLWRPHEPVYPKLIKTTIEGLSIEETKEMRKRGLAVPVLTKLAKN 313
RGRNYN + RP PLMLW+P PVYP+L++ EGL++EE MRK+G + + KLAKN
Sbjct: 327 RGRNYNYRNRPRFPLMLWKPVTPVYPRLVQRAPEGLTLEEAGAMRKKGRKLIPICKLAKN 386
Query: 314 GYYGSLVPMVRDAFLVSELVRIDCQGLERSDYKKIGCKLRS 354
G Y LV VR+AF ELVRI+CQGL SDY+KIG KL+
Sbjct: 387 GVYTDLVNNVREAFEECELVRINCQGLNASDYRKIGAKLKD 427
>gi|225445140|ref|XP_002280611.1| PREDICTED: CRS2-associated factor 1, chloroplastic [Vitis vinifera]
Length = 752
Score = 261 bits (668), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 142/281 (50%), Positives = 178/281 (63%), Gaps = 21/281 (7%)
Query: 92 LPFDFRYSYTETNQNVRPIGLREPKYSPFGPGRLEREWTGVCA----------------- 134
+PF+ RYSYTET + V+PI LREP + PFGP + R WTG
Sbjct: 150 VPFELRYSYTETPK-VKPIALREPPFLPFGPDTMPRPWTGRAPLPPSKKKLKEFDSFQLP 208
Query: 135 PAADPKVKSAEE-GAEDPNLEEKRILVRERIQGEPLTNAERKALVEKCHRNRTKRQINLG 193
P +VK + G P + + RE I GEPLT E K LV+ C + +KRQ+N+G
Sbjct: 209 PPGKKRVKPVQAPGPFLPGSGPRYVRSREEILGEPLTEEEIKELVQGCVK--SKRQLNMG 266
Query: 194 RDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIFRHGGTLVLY 253
RDGLTHNML++IH HWK +IKC GV TVDM NV QLE+KT GK+I+ GG L L+
Sbjct: 267 RDGLTHNMLDNIHAHWKRRRVCKIKCKGVCTVDMDNVRQQLEEKTGGKVIYGKGGVLFLF 326
Query: 254 RGRNYNPKKRPVIPLMLWRPHEPVYPKLIKTTIEGLSIEETKEMRKRGLAVPVLTKLAKN 313
RGRNYN + RP PLMLW+P PVYP+L++ EGL++EE MRK+G + + KLAKN
Sbjct: 327 RGRNYNYRNRPRFPLMLWKPVTPVYPRLVQRAPEGLTLEEAGAMRKKGRKLIPICKLAKN 386
Query: 314 GYYGSLVPMVRDAFLVSELVRIDCQGLERSDYKKIGCKLRS 354
G Y LV VR+AF ELVRI+CQGL SDY+KIG KL+
Sbjct: 387 GVYTDLVNNVREAFEECELVRINCQGLNASDYRKIGAKLKD 427
>gi|224113759|ref|XP_002332503.1| predicted protein [Populus trichocarpa]
gi|222832483|gb|EEE70960.1| predicted protein [Populus trichocarpa]
Length = 699
Score = 259 bits (661), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 139/279 (49%), Positives = 176/279 (63%), Gaps = 21/279 (7%)
Query: 93 PFDFRYSYTETNQNVRPIGLREPKYSPFGPGRLEREWTG-----------------VCAP 135
PF+F+YSYTET + V+P+ LRE Y+PFGP + R WTG V P
Sbjct: 155 PFEFKYSYTETPK-VKPLKLREAPYAPFGPITMPRPWTGRAPLPPSKKKLREFDSFVLPP 213
Query: 136 AADPKVKSAEE-GAEDPNLEEKRILVRERIQGEPLTNAERKALVEKCHRNRTKRQINLGR 194
VK + G P + RE I G+PLT E + LV+ C + KRQ+N+GR
Sbjct: 214 PDKKGVKPVQAPGPFLPGAGPRYAKTREEILGDPLTQEEIQELVDGCLK--AKRQLNMGR 271
Query: 195 DGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIFRHGGTLVLYR 254
DGLTHNML++IH HWK +IKC GV TVDM NVC QLE++T GKII+R GG L L+R
Sbjct: 272 DGLTHNMLDNIHAHWKRRRVCKIKCKGVCTVDMDNVCQQLEERTGGKIIYRKGGVLYLFR 331
Query: 255 GRNYNPKKRPVIPLMLWRPHEPVYPKLIKTTIEGLSIEETKEMRKRGLAVPVLTKLAKNG 314
GRNYN + RP PLMLW+P PVYP+LI+ EGL+++E MR +G + + KL KNG
Sbjct: 332 GRNYNYRFRPRFPLMLWKPVTPVYPRLIQRAPEGLTLQEASGMRNKGRKLIPICKLGKNG 391
Query: 315 YYGSLVPMVRDAFLVSELVRIDCQGLERSDYKKIGCKLR 353
Y LV VR+AF ELVRI+CQG+ SD++KIG KLR
Sbjct: 392 VYRDLVRNVREAFEECELVRINCQGMNGSDFRKIGAKLR 430
>gi|357132021|ref|XP_003567631.1| PREDICTED: CRS2-associated factor 2, chloroplastic-like
[Brachypodium distachyon]
Length = 607
Score = 258 bits (658), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 142/290 (48%), Positives = 182/290 (62%), Gaps = 33/290 (11%)
Query: 93 PFDFRYSYTETNQNVRPIGLREPKYSPFGPGRLEREWTGVCAPAADPKVKSAEEGA---- 148
PFDF++SY+E + P+ +REP + PF P + R WTG AP + K+ +G
Sbjct: 130 PFDFQFSYSEAPRAA-PLAIREPPFLPFAPPTMPRPWTG-KAPLLTKEEKARRKGVRLHT 187
Query: 149 ----EDPNLEEKRILV---------------------RERIQGEPLTNAERKALVEKCHR 183
E P ++ RE + GEPLT AE +ALV K H
Sbjct: 188 PLGQESPQTVSPHGIMMEVRGRRQLDLGRVSPGDGRRREEVLGEPLTPAEVRALV-KPHM 246
Query: 184 NRTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKII 243
+ RQ+N+GRDGLTHNML IH HW+ E +++C GVPTVDMKN+C+ LE+K+ GK+I
Sbjct: 247 SHN-RQLNIGRDGLTHNMLEMIHCHWRRQEICKVRCRGVPTVDMKNLCYHLEEKSGGKVI 305
Query: 244 FRHGGTLVLYRGRNYNPKKRPVIPLMLWRPHEPVYPKLIKTTIEGLSIEETKEMRKRGLA 303
R GG + LYRGRNYNP+ RP PLMLW+P PVYPKLI+ EGL+IEE EMR RG
Sbjct: 306 HRVGGVVFLYRGRNYNPRTRPRYPLMLWKPATPVYPKLIQLAPEGLTIEEAAEMRIRGQN 365
Query: 304 VPVLTKLAKNGYYGSLVPMVRDAFLVSELVRIDCQGLERSDYKKIGCKLR 353
+ + KLAKNG Y +LV VRDAF ++LV+I+C+GLE SDYKKIG KLR
Sbjct: 366 LLPIFKLAKNGIYLNLVKDVRDAFEGNDLVKINCEGLEPSDYKKIGAKLR 415
>gi|326525845|dbj|BAJ93099.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 607
Score = 257 bits (657), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 141/299 (47%), Positives = 187/299 (62%), Gaps = 33/299 (11%)
Query: 93 PFDFRYSYTETNQNVRPIGLREPKYSPFGPGRLEREWTGVCAPAADPKVKSAEEG----- 147
PFDF++SY+E + P+ +REP + PF P + R WTG AP + K+ G
Sbjct: 129 PFDFQFSYSEVPRAA-PLAIREPPFLPFAPPTMPRPWTGK-APLLTKEEKARRRGVRLHT 186
Query: 148 --AEDP-----------------NLEEKRILV-----RERIQGEPLTNAERKALVEKCHR 183
++P L+ R+ + RE + GEPLT+AE + LV K H
Sbjct: 187 PLGQEPPRTASPHGVMMEVRGRRQLDFARVSLGDGRSREEVLGEPLTSAETRELV-KPHM 245
Query: 184 NRTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKII 243
+ RQ+N+GRDGLTHNML IH HW+ E +++C GVPTVDM N+C+ LE+K+ GK+I
Sbjct: 246 SHN-RQLNIGRDGLTHNMLEMIHCHWRRQEVCKVRCRGVPTVDMNNLCYHLEEKSGGKVI 304
Query: 244 FRHGGTLVLYRGRNYNPKKRPVIPLMLWRPHEPVYPKLIKTTIEGLSIEETKEMRKRGLA 303
R GG + LYRGRNYNP+ RP PLMLW+P PVYPKLI+ EGL++EE EMR+RG
Sbjct: 305 KRVGGVVFLYRGRNYNPRTRPRYPLMLWKPATPVYPKLIQQAPEGLTVEEAAEMRRRGQI 364
Query: 304 VPVLTKLAKNGYYGSLVPMVRDAFLVSELVRIDCQGLERSDYKKIGCKLRSWFRISFLA 362
+ + KLAKNG Y +LV V+DAF ++LV+IDC+GLE SDYKKIG KLR L+
Sbjct: 365 LLPILKLAKNGIYINLVKDVQDAFEGNDLVKIDCKGLEPSDYKKIGAKLRDLVPCVLLS 423
>gi|168040806|ref|XP_001772884.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162675795|gb|EDQ62286.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 463
Score = 256 bits (654), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 143/286 (50%), Positives = 176/286 (61%), Gaps = 23/286 (8%)
Query: 96 FRYSYTETNQNVRPIGLREPKYSPFGPGRLEREWTGVCAPAADPKVKSAE-EGAEDPNLE 154
++YSYTET + V P+G REP YSPFGP + R WTG P A K K E + P +
Sbjct: 1 YQYSYTETPK-VAPVGFREPVYSPFGPEGVNRPWTGR-PPLAKSKKKPREFDSFNPPPIG 58
Query: 155 EKRI------------------LVRERIQGEPLTNAERKALVEKCHRNRTKRQINLGRDG 196
K + RE I G PLT+AE + LV K + RQINLGRDG
Sbjct: 59 RKGVKPVQAPGPYPEGQGPKLGRSREEILGAPLTSAEVRELVTKARKE--PRQINLGRDG 116
Query: 197 LTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIFRHGGTLVLYRGR 256
LTHNMLN +H HWK ++KC GVPTVDM NVC LE+KT GKII R GG + L+RGR
Sbjct: 117 LTHNMLNLVHEHWKRRRVCKVKCKGVPTVDMDNVCRVLEEKTGGKIILRQGGAVYLFRGR 176
Query: 257 NYNPKKRPVIPLMLWRPHEPVYPKLIKTTIEGLSIEETKEMRKRGLAVPVLTKLAKNGYY 316
NYN K RPVIPLMLW+P P+YPKLI+ GL+IEE +RK G +P + L KNG Y
Sbjct: 177 NYNYKTRPVIPLMLWKPPAPIYPKLIEKAPAGLTIEEANNLRKLGRELPPVCHLGKNGVY 236
Query: 317 GSLVPMVRDAFLVSELVRIDCQGLERSDYKKIGCKLRSWFRISFLA 362
+LV VR+AF V +LV++DC+ + SDYKKIG KL+ L+
Sbjct: 237 VNLVRDVRNAFKVDDLVKVDCKNMNPSDYKKIGAKLKDLVPCVLLS 282
>gi|302763677|ref|XP_002965260.1| hypothetical protein SELMODRAFT_62891 [Selaginella moellendorffii]
gi|302809791|ref|XP_002986588.1| hypothetical protein SELMODRAFT_42935 [Selaginella moellendorffii]
gi|300145771|gb|EFJ12445.1| hypothetical protein SELMODRAFT_42935 [Selaginella moellendorffii]
gi|300167493|gb|EFJ34098.1| hypothetical protein SELMODRAFT_62891 [Selaginella moellendorffii]
Length = 366
Score = 255 bits (651), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 136/290 (46%), Positives = 183/290 (63%), Gaps = 25/290 (8%)
Query: 93 PFDFRYSYTETNQNVRPIGLREPKYSPFGPGRLEREWTG----------------VCAPA 136
PF+F+Y+Y+E + PI R P++SPFGP + R WTG P
Sbjct: 1 PFEFQYTYSEMPKE-EPIAERGPQFSPFGPDTMPRPWTGRKPLPPSKKKRHEIDSFNPPP 59
Query: 137 ADPK-VKSAEEGAEDPNLEEKRILV---RERIQGEPLTNAERKALVEKCHRNRTKRQINL 192
+ K VK E P LE +R ++ RE + GEPLT E LV C N+ RQ+N+
Sbjct: 60 PNLKGVKPVEPAG--PFLEGQRPILATTREEVMGEPLTPDEIGDLVLAC--NKEHRQVNI 115
Query: 193 GRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIFRHGGTLVL 252
G+DGLTHNML+ IH HWK ++++C GVPT+DM NVCF +EDKT GKII RHGG++ L
Sbjct: 116 GKDGLTHNMLDLIHCHWKRRRVIKLRCKGVPTIDMDNVCFHIEDKTGGKIIQRHGGSIYL 175
Query: 253 YRGRNYNPKKRPVIPLMLWRPHEPVYPKLIKTTIEGLSIEETKEMRKRGLAVPVLTKLAK 312
+RGRNYNP+ RP IPLM+W+P P+YP+LI+ GLS+E +R+RG V LTKL++
Sbjct: 176 FRGRNYNPRYRPEIPLMMWKPPVPIYPRLIQQAPAGLSVEHADYLRRRGRRVKPLTKLSR 235
Query: 313 NGYYGSLVPMVRDAFLVSELVRIDCQGLERSDYKKIGCKLRSWFRISFLA 362
NG Y LV V+ AF V ELV++DC+G+ +D +KIG KL+ I L+
Sbjct: 236 NGVYLHLVNEVKSAFEVDELVKLDCRGMNIADVRKIGAKLKELLGIVLLS 285
>gi|115436276|ref|NP_001042896.1| Os01g0323300 [Oryza sativa Japonica Group]
gi|75115027|sp|Q657G7.1|CAF2P_ORYSJ RecName: Full=CRS2-associated factor 2, chloroplastic; AltName:
Full=Chloroplastic group IIA intron splicing facilitator
CRS2-associated factor 2; Flags: Precursor
gi|52075771|dbj|BAD44991.1| putative CRS2-associated factor 2 [Oryza sativa Japonica Group]
gi|52076260|dbj|BAD45045.1| putative CRS2-associated factor 2 [Oryza sativa Japonica Group]
gi|113532427|dbj|BAF04810.1| Os01g0323300 [Oryza sativa Japonica Group]
Length = 607
Score = 253 bits (647), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 145/299 (48%), Positives = 182/299 (60%), Gaps = 33/299 (11%)
Query: 93 PFDFRYSYTETNQNVRPIGLREPKYSPFGPGRLEREWTGVCAPAADPKVKSAEEGA---- 148
PFDFR+SY+E + P+ +REP + PF P + R WTG AP + K+ G
Sbjct: 127 PFDFRFSYSECPR-APPVAIREPAFLPFAPPTMPRPWTGK-APLLTKEEKARRRGVRLHT 184
Query: 149 ----EDP----------------NLEEKRIL-----VRERIQGEPLTNAERKALVEKCHR 183
E P L+ R+ RE + GEPLT AE + LV K H
Sbjct: 185 PLGEEAPRTVSAHGIMMEVRGRRKLDLARVSPGDGRSREEVLGEPLTAAEVRDLV-KPHI 243
Query: 184 NRTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKII 243
+ RQ+N+GRDGLTHNML IH HW+ E +++C GVPTVDMKN+C+ LE+K+ GK+I
Sbjct: 244 SHN-RQLNIGRDGLTHNMLEMIHCHWRRQEICKVRCRGVPTVDMKNLCYHLEEKSGGKVI 302
Query: 244 FRHGGTLVLYRGRNYNPKKRPVIPLMLWRPHEPVYPKLIKTTIEGLSIEETKEMRKRGLA 303
R GG + LYRGRNYNP+ RP PLMLW+P PVYPKLI+ EGL+ EE EMR+RG
Sbjct: 303 HRVGGVVFLYRGRNYNPRTRPRYPLMLWKPATPVYPKLIQEAPEGLTKEEADEMRRRGKD 362
Query: 304 VPVLTKLAKNGYYGSLVPMVRDAFLVSELVRIDCQGLERSDYKKIGCKLRSWFRISFLA 362
+ + KLAKNG Y LV VRDAF S+LV+IDC+GL SDYKKIG KLR L+
Sbjct: 363 LLPICKLAKNGIYIYLVRDVRDAFEGSDLVKIDCEGLNPSDYKKIGAKLRDLVPCVLLS 421
>gi|125525663|gb|EAY73777.1| hypothetical protein OsI_01650 [Oryza sativa Indica Group]
Length = 609
Score = 253 bits (647), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 145/299 (48%), Positives = 182/299 (60%), Gaps = 33/299 (11%)
Query: 93 PFDFRYSYTETNQNVRPIGLREPKYSPFGPGRLEREWTGVCAPAADPKVKSAEEGA---- 148
PFDFR+SY+E + P+ +REP + PF P + R WTG AP + K+ G
Sbjct: 129 PFDFRFSYSECPR-APPVAIREPAFLPFAPPTMPRPWTGK-APLLTKEEKARRRGVRLHT 186
Query: 149 ----EDP----------------NLEEKRIL-----VRERIQGEPLTNAERKALVEKCHR 183
E P L+ R+ RE + GEPLT AE + LV K H
Sbjct: 187 PLGEEAPRTVSAHGIMMEVRGRRKLDLARVSPGDGRSREEVLGEPLTAAEVRDLV-KPHI 245
Query: 184 NRTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKII 243
+ RQ+N+GRDGLTHNML IH HW+ E +++C GVPTVDMKN+C+ LE+K+ GK+I
Sbjct: 246 SHN-RQLNIGRDGLTHNMLEMIHCHWRRQEICKVRCRGVPTVDMKNLCYHLEEKSGGKVI 304
Query: 244 FRHGGTLVLYRGRNYNPKKRPVIPLMLWRPHEPVYPKLIKTTIEGLSIEETKEMRKRGLA 303
R GG + LYRGRNYNP+ RP PLMLW+P PVYPKLI+ EGL+ EE EMR+RG
Sbjct: 305 HRVGGVVFLYRGRNYNPRTRPRYPLMLWKPATPVYPKLIQEAPEGLTKEEADEMRRRGKD 364
Query: 304 VPVLTKLAKNGYYGSLVPMVRDAFLVSELVRIDCQGLERSDYKKIGCKLRSWFRISFLA 362
+ + KLAKNG Y LV VRDAF S+LV+IDC+GL SDYKKIG KLR L+
Sbjct: 365 LLPICKLAKNGIYIYLVRDVRDAFEGSDLVKIDCEGLNPSDYKKIGAKLRDLVPCVLLS 423
>gi|162464008|ref|NP_001105669.1| CRS2-associated factor 2, chloroplastic precursor [Zea mays]
gi|75147311|sp|Q84N48.1|CAF2P_MAIZE RecName: Full=CRS2-associated factor 2, chloroplastic; AltName:
Full=Chloroplastic group IIA intron splicing facilitator
CRS2-associated factor 2; Flags: Precursor
gi|30349369|gb|AAP22136.1| CRS2-associated factor 2 [Zea mays]
gi|414877310|tpg|DAA54441.1| TPA: crs2 associated factor2 [Zea mays]
Length = 611
Score = 253 bits (646), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 141/299 (47%), Positives = 184/299 (61%), Gaps = 33/299 (11%)
Query: 93 PFDFRYSYTETNQNVRPIGLREPKYSPFGPGRLEREWTGVCAPAADPKVKSAEEGA---- 148
PFDF++SY+E + P+ +REP + PF P + R WTG AP + K+ G
Sbjct: 131 PFDFQFSYSEAPR-APPLAIREPAFLPFAPPTMPRPWTGK-APLLTKEEKARRRGVRLHT 188
Query: 149 ----EDPN----------LEEKRIL-----------VRERIQGEPLTNAERKALVEKCHR 183
E P + E+R + RE + GEPLT +E +ALV K H
Sbjct: 189 PLGQETPQTVSAHGIMMEVRERRKMDLARVSPGDGRSREEVLGEPLTPSEVRALV-KPHI 247
Query: 184 NRTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKII 243
+ RQ+N+GRDGLTHNML IH HW+ E +++C GVPTVDMKN+C+ LE+K+ GK+I
Sbjct: 248 SHN-RQLNIGRDGLTHNMLEMIHCHWRRQEICKVRCRGVPTVDMKNLCYHLEEKSGGKVI 306
Query: 244 FRHGGTLVLYRGRNYNPKKRPVIPLMLWRPHEPVYPKLIKTTIEGLSIEETKEMRKRGLA 303
R GG + LYRGR+Y+PK RP PLMLW+P PVYPKLIK +G + EE EMR++G
Sbjct: 307 HRVGGVVFLYRGRHYDPKTRPRYPLMLWKPATPVYPKLIKEAPDGFTKEEADEMRRKGRD 366
Query: 304 VPVLTKLAKNGYYGSLVPMVRDAFLVSELVRIDCQGLERSDYKKIGCKLRSWFRISFLA 362
+ + KLAKNG Y +LV VRDAF S+LV+IDC+GL SDYKKIG KLR L+
Sbjct: 367 LLPICKLAKNGIYITLVKDVRDAFEGSDLVKIDCEGLNPSDYKKIGAKLRDLVPCVLLS 425
>gi|356495236|ref|XP_003516485.1| PREDICTED: CRS2-associated factor 1, chloroplastic-like [Glycine
max]
Length = 705
Score = 253 bits (646), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 134/280 (47%), Positives = 177/280 (63%), Gaps = 13/280 (4%)
Query: 93 PFDFRYSYTETNQNVRPIGLREPKYSPFGPGRLEREWTGVC-APAADPKVKSAEEGAEDP 151
PF+FR+SYTET N +P+ LREP ++PFGP L R WTG P + VK A P
Sbjct: 154 PFEFRFSYTET-PNAKPVKLREPPFAPFGPASLPRPWTGRNPVPPSKTTVKDFHALALPP 212
Query: 152 NLEEKRILVR---------ERIQGEPLTNAERKALVEKCHRNRTKRQINLGRDGLTHNML 202
EE+ VR + + GEPLT E L++ + + RQ+N+GRDGLTHNML
Sbjct: 213 PDEEEVQPVRLAGPVWESRDEVLGEPLTKDEINRLIKATEK--SSRQLNIGRDGLTHNML 270
Query: 203 NDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIFRHGGTLVLYRGRNYNPKK 262
+IH +W A +IKC GV TVDM NVC QLE++T GKII+R GT+ L+RG+NYN +
Sbjct: 271 ENIHTYWMRRSACKIKCRGVCTVDMDNVCQQLEERTGGKIIYRQAGTVYLFRGKNYNYET 330
Query: 263 RPVIPLMLWRPHEPVYPKLIKTTIEGLSIEETKEMRKRGLAVPVLTKLAKNGYYGSLVPM 322
RP P M W+P PVYP+LIK EGL++E+ EMR++G + + KL KNG Y LV
Sbjct: 331 RPRFPFMRWKPVSPVYPRLIKRVPEGLTLEKATEMRQKGRDLMPICKLGKNGVYWDLVTN 390
Query: 323 VRDAFLVSELVRIDCQGLERSDYKKIGCKLRSWFRISFLA 362
+R+AF ELVRI+CQ L SDY++IG KL+ + L+
Sbjct: 391 IREAFEECELVRINCQELNTSDYRRIGAKLKDLVPCALLS 430
Score = 41.2 bits (95), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 39/69 (56%)
Query: 192 LGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIFRHGGTLV 251
LG++G+ +++ +I ++ E VRI C + T D + + +L+D ++ ++
Sbjct: 378 LGKNGVYWDLVTNIREAFEECELVRINCQELNTSDYRRIGAKLKDLVPCALLSFENDHIL 437
Query: 252 LYRGRNYNP 260
++RG+N+ P
Sbjct: 438 MWRGQNWRP 446
>gi|218188278|gb|EEC70705.1| hypothetical protein OsI_02075 [Oryza sativa Indica Group]
Length = 701
Score = 253 bits (646), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 134/292 (45%), Positives = 176/292 (60%), Gaps = 28/292 (9%)
Query: 93 PFDFRYSYTETNQNVRPIGLREPKYSPFGPGRLEREWTG-----------------VCAP 135
PF+F+YSYTET + RP+ LRE + PFGP R WTG + P
Sbjct: 91 PFEFQYSYTETPR-ARPVALREAPFLPFGPEVTPRPWTGRKPLPKSRKELPEFDSFMLPP 149
Query: 136 AADPKVKSAEE-----GAEDPNLEEKRILVRERIQGEPLTNAERKALVEKCHRNRTKRQI 190
VK + +P + RE + GEPLT E LV+ +TKRQ+
Sbjct: 150 PGKKGVKPVQSPGPFLAGTEPRYQAAS---REEVLGEPLTKEEVDELVKATL--KTKRQL 204
Query: 191 NLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIFRHGGTL 250
N+GRDGLTHNML +IH+HWK +IKC GV TVDM NVC QLE+K GK+I GG +
Sbjct: 205 NIGRDGLTHNMLENIHSHWKRKRVCKIKCKGVCTVDMDNVCQQLEEKVGGKVIHHQGGVI 264
Query: 251 VLYRGRNYNPKKRPVIPLMLWRPHEPVYPKLIKTTIEGLSIEETKEMRKRGLAVPVLTKL 310
L+RGRNYN + RP+ PLMLW+P PVYP+L+K +GL+ +E ++MRKRG +P + KL
Sbjct: 265 FLFRGRNYNYRTRPIYPLMLWKPAAPVYPRLVKKIPDGLTPDEAEDMRKRGRQLPPICKL 324
Query: 311 AKNGYYGSLVPMVRDAFLVSELVRIDCQGLERSDYKKIGCKLRSWFRISFLA 362
KNG Y +LV VR+AF +LVR+DC GL +SD +KIG KL+ + L+
Sbjct: 325 GKNGVYLNLVKQVREAFEACDLVRVDCSGLNKSDCRKIGAKLKDLVPCTLLS 376
>gi|115436730|ref|NP_001043122.1| Os01g0495900 [Oryza sativa Japonica Group]
gi|75109409|sp|Q5VMQ5.1|CAF1P_ORYSJ RecName: Full=CRS2-associated factor 1, chloroplastic; AltName:
Full=Chloroplastic group IIA intron splicing facilitator
CRS2-associated factor 1; Flags: Precursor
gi|55297418|dbj|BAD69270.1| putative CRS2-associated factor 1 [Oryza sativa Japonica Group]
gi|55297612|dbj|BAD68987.1| putative CRS2-associated factor 1 [Oryza sativa Japonica Group]
gi|113532653|dbj|BAF05036.1| Os01g0495900 [Oryza sativa Japonica Group]
gi|215694476|dbj|BAG89423.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222618506|gb|EEE54638.1| hypothetical protein OsJ_01906 [Oryza sativa Japonica Group]
Length = 701
Score = 253 bits (646), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 134/292 (45%), Positives = 176/292 (60%), Gaps = 28/292 (9%)
Query: 93 PFDFRYSYTETNQNVRPIGLREPKYSPFGPGRLEREWTG-----------------VCAP 135
PF+F+YSYTET + RP+ LRE + PFGP R WTG + P
Sbjct: 91 PFEFQYSYTETPR-ARPVALREAPFLPFGPEVTPRPWTGRKPLPKSRKELPEFDSFMLPP 149
Query: 136 AADPKVKSAEE-----GAEDPNLEEKRILVRERIQGEPLTNAERKALVEKCHRNRTKRQI 190
VK + +P + RE + GEPLT E LV+ +TKRQ+
Sbjct: 150 PGKKGVKPVQSPGPFLAGTEPRYQAAS---REEVLGEPLTKEEVDELVKATL--KTKRQL 204
Query: 191 NLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIFRHGGTL 250
N+GRDGLTHNML +IH+HWK +IKC GV TVDM NVC QLE+K GK+I GG +
Sbjct: 205 NIGRDGLTHNMLENIHSHWKRKRVCKIKCKGVCTVDMDNVCQQLEEKVGGKVIHHQGGVI 264
Query: 251 VLYRGRNYNPKKRPVIPLMLWRPHEPVYPKLIKTTIEGLSIEETKEMRKRGLAVPVLTKL 310
L+RGRNYN + RP+ PLMLW+P PVYP+L+K +GL+ +E ++MRKRG +P + KL
Sbjct: 265 FLFRGRNYNYRTRPIYPLMLWKPAAPVYPRLVKKIPDGLTPDEAEDMRKRGRQLPPICKL 324
Query: 311 AKNGYYGSLVPMVRDAFLVSELVRIDCQGLERSDYKKIGCKLRSWFRISFLA 362
KNG Y +LV VR+AF +LVR+DC GL +SD +KIG KL+ + L+
Sbjct: 325 GKNGVYLNLVKQVREAFEACDLVRVDCSGLNKSDCRKIGAKLKDLVPCTLLS 376
>gi|242052829|ref|XP_002455560.1| hypothetical protein SORBIDRAFT_03g013160 [Sorghum bicolor]
gi|241927535|gb|EES00680.1| hypothetical protein SORBIDRAFT_03g013160 [Sorghum bicolor]
Length = 614
Score = 251 bits (641), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 139/299 (46%), Positives = 185/299 (61%), Gaps = 33/299 (11%)
Query: 93 PFDFRYSYTETNQNVRPIGLREPKYSPFGPGRLEREWTGVCAPAADPKVKSAEEG----- 147
PFDF++SY+E P+ +REP + PF P + R WTG AP + K+ G
Sbjct: 133 PFDFQFSYSE-GPRAPPLAIREPAFVPFAPPTMPRPWTGK-APLLTKEEKARRRGVRLHT 190
Query: 148 --AEDP-----------NLEEKRIL-----------VRERIQGEPLTNAERKALVEKCHR 183
++P + ++R + RE + GEPLT +E +ALV K H
Sbjct: 191 PLGQEPPQTVSAHGIMMEVRDRRQMDLARVSPGDGRSREEVLGEPLTPSEVRALV-KPHI 249
Query: 184 NRTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKII 243
+ RQ+N+GRDGLTHNML IH HW+ E +++C GVPTVDMKN+C+ LE+K+ GK+I
Sbjct: 250 SHN-RQLNIGRDGLTHNMLEMIHCHWRRQEICKVRCRGVPTVDMKNLCYHLEEKSGGKVI 308
Query: 244 FRHGGTLVLYRGRNYNPKKRPVIPLMLWRPHEPVYPKLIKTTIEGLSIEETKEMRKRGLA 303
R GG + +YRGR+Y+PK RP PLMLW+P PVYPKLIK EGL+ EE EMR++G
Sbjct: 309 HRVGGVVFVYRGRHYDPKTRPHYPLMLWKPATPVYPKLIKEVPEGLTKEEADEMRRKGRD 368
Query: 304 VPVLTKLAKNGYYGSLVPMVRDAFLVSELVRIDCQGLERSDYKKIGCKLRSWFRISFLA 362
+ + KLAKNG Y +LV VRDAF ++LV+IDC+GL SDYKKIG KLR L+
Sbjct: 369 LLPICKLAKNGIYITLVKDVRDAFEGNDLVKIDCEGLNPSDYKKIGAKLRDLVPCVLLS 427
>gi|22329751|ref|NP_173754.2| CRS2-associated factor 2 [Arabidopsis thaliana]
gi|75173812|sp|Q9LDA9.1|CAF2P_ARATH RecName: Full=CRS2-associated factor 2, chloroplastic; AltName:
Full=Chloroplastic group IIA intron splicing facilitator
CRS2-associated factor 2; Flags: Precursor
gi|8778588|gb|AAF79596.1|AC007945_16 F28C11.4 [Arabidopsis thaliana]
gi|9295699|gb|AAF87005.1|AC005292_14 F26F24.27 [Arabidopsis thaliana]
gi|17065312|gb|AAL32810.1| Unknown protein [Arabidopsis thaliana]
gi|21387129|gb|AAM47968.1| unknown protein [Arabidopsis thaliana]
gi|332192262|gb|AEE30383.1| CRS2-associated factor 2 [Arabidopsis thaliana]
Length = 564
Score = 251 bits (640), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 137/280 (48%), Positives = 174/280 (62%), Gaps = 23/280 (8%)
Query: 93 PFDFRYSYTETNQNVRPIGLREPKYSPFGPGRLEREWTGVCA-----------------P 135
PF+F++SY+ET + V+P+G+REP + PF P + R WTG P
Sbjct: 110 PFEFQFSYSETPK-VKPVGIREPAFMPFAPPTMPRPWTGKAPLKKSKKKIPLFDSFNPPP 168
Query: 136 AADPKVKSAEEGAEDP-NLEEKRILVRERIQGEPLTNAERKALVE-KCHRNRTKRQINLG 193
A VK E P K + RE + GEPL E+ L++ H NR Q+NLG
Sbjct: 169 AGKSGVKYVEMPGPLPFGRYPKEGMNREEVLGEPLKRWEKGMLIKPHMHDNR---QVNLG 225
Query: 194 RDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIFRHGGTLVLY 253
RDG THNML IH+HWK +++C GVPTVDM NVC LE+KT G+II R GG + L+
Sbjct: 226 RDGFTHNMLELIHSHWKRRRVCKVRCKGVPTVDMNNVCRVLEEKTGGEIIHRVGGVVYLF 285
Query: 254 RGRNYNPKKRPVIPLMLWRPHEPVYPKLIKTTIEGLSIEETKEMRKRGLAVPVLTKLAKN 313
RGRNYN + RP PLMLW+P PVYPKLI+ EGL+ EE E R +G ++ + KL+KN
Sbjct: 286 RGRNYNYRTRPQYPLMLWKPAAPVYPKLIQEVPEGLTKEEAHEFRVKGKSLRPICKLSKN 345
Query: 314 GYYGSLVPMVRDAFLVSELVRIDCQGLERSDYKKIGCKLR 353
G Y SLV VRDAF +S LV++DC GLE SDYKKIG KL+
Sbjct: 346 GVYVSLVKDVRDAFELSSLVKVDCPGLEPSDYKKIGAKLK 385
>gi|242082009|ref|XP_002445773.1| hypothetical protein SORBIDRAFT_07g025550 [Sorghum bicolor]
gi|241942123|gb|EES15268.1| hypothetical protein SORBIDRAFT_07g025550 [Sorghum bicolor]
Length = 674
Score = 250 bits (638), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 135/289 (46%), Positives = 173/289 (59%), Gaps = 22/289 (7%)
Query: 93 PFDFRYSYTETNQNVRPIGLREPKYSPFGPGRLEREWTG-----------------VCAP 135
PF+F+YSYTE + RP+ LRE + PFGP R WTG V P
Sbjct: 91 PFEFQYSYTEAPR-ARPVALREAPFLPFGPEATPRPWTGRKPLPKSRKELPEFDSFVLPP 149
Query: 136 AADPKVKSAEE-GAEDPNLEEK-RILVRERIQGEPLTNAERKALVEKCHRNRTKRQINLG 193
VK + G +E + + + RE I GEPLT E LV+ + TKRQ+N+G
Sbjct: 150 PGKKGVKPVQSPGPFLAGMEPRYQSVSREDILGEPLTKEEVFELVKGSLK--TKRQLNMG 207
Query: 194 RDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIFRHGGTLVLY 253
RDGLTHNML +IH+HWK +IKC GV TVDM N+C QLE+K GK+I R GG + L+
Sbjct: 208 RDGLTHNMLENIHSHWKRKRVCKIKCKGVCTVDMDNICQQLEEKVGGKVIHRQGGVIFLF 267
Query: 254 RGRNYNPKKRPVIPLMLWRPHEPVYPKLIKTTIEGLSIEETKEMRKRGLAVPVLTKLAKN 313
RGRNYN + RP PLMLW+P PVYP+L+ GL+ +E EMR RG +P + KL KN
Sbjct: 268 RGRNYNYRTRPCFPLMLWKPVAPVYPRLVTKVPGGLTPDEATEMRARGRQLPPICKLGKN 327
Query: 314 GYYGSLVPMVRDAFLVSELVRIDCQGLERSDYKKIGCKLRSWFRISFLA 362
G Y +LV VR+AF +LVR+DC GL +SD +KIG KL+ L+
Sbjct: 328 GVYANLVKQVREAFEACDLVRVDCSGLNKSDCRKIGAKLKDLVPCILLS 376
>gi|357132246|ref|XP_003567742.1| PREDICTED: CRS2-associated factor 1, chloroplastic-like
[Brachypodium distachyon]
Length = 702
Score = 249 bits (636), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 132/283 (46%), Positives = 171/283 (60%), Gaps = 28/283 (9%)
Query: 93 PFDFRYSYTETNQNVRPIGLREPKYSPFGPGRLEREWTG-----------------VCAP 135
PF+F+YSYTE + RP+ LRE + PFGP R WTG V P
Sbjct: 89 PFEFQYSYTEAPR-ARPVALREAPFLPFGPEATPRPWTGRKPLPKSRKELPEFDSFVLPP 147
Query: 136 AADPKVKSAEE-----GAEDPNLEEKRILVRERIQGEPLTNAERKALVEKCHRNRTKRQI 190
VK + +P + + RE + GEPL+ E LV+ + KRQ+
Sbjct: 148 HGKKGVKPVQSPGPFLAGMEPRYQAQS---REEVLGEPLSKEEVAELVKG--NLKAKRQL 202
Query: 191 NLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIFRHGGTL 250
N+GRDGLTHNML +IH HWK +IKC GV TVDM NVC QLE++ GK+I R GG +
Sbjct: 203 NIGRDGLTHNMLENIHAHWKRKRVCKIKCKGVCTVDMDNVCQQLEERVGGKVIHRQGGVV 262
Query: 251 VLYRGRNYNPKKRPVIPLMLWRPHEPVYPKLIKTTIEGLSIEETKEMRKRGLAVPVLTKL 310
L+RGRNYN + RPV PLMLW+P PVYP+L+KT +GL+ +E EMRK+G + + KL
Sbjct: 263 FLFRGRNYNYRTRPVFPLMLWKPAAPVYPRLVKTVPDGLTSDEATEMRKKGRQLTPVCKL 322
Query: 311 AKNGYYGSLVPMVRDAFLVSELVRIDCQGLERSDYKKIGCKLR 353
KNG Y +LV VR+AF +LVR+DC GL +SD +KIG KL+
Sbjct: 323 GKNGVYANLVNEVREAFEACDLVRVDCSGLNKSDCRKIGAKLK 365
>gi|307135966|gb|ADN33825.1| RNA splicing factor [Cucumis melo subsp. melo]
Length = 603
Score = 248 bits (634), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 140/280 (50%), Positives = 173/280 (61%), Gaps = 23/280 (8%)
Query: 93 PFDFRYSYTETNQNVRPIGLREPKYSPFGPGRLEREWTGVCAPAADPKVK---------- 142
PF+F+YSY+ET NV+PI +REP + PF P + R WTG AP K K
Sbjct: 149 PFEFQYSYSET-PNVKPIAIREPAFLPFAPPTMPRPWTG-KAPLKSSKKKIPLFDSFNPP 206
Query: 143 -SAEEGAEDPNLEE--------KRILVRERIQGEPLTNAERKALVEKCHRNRTKRQINLG 193
+G + L K RE I GEPL N E + LV K H + RQ+NLG
Sbjct: 207 PPGTKGVKQVQLPGPFPLGQYPKEGKSREEILGEPLKNWEIRMLV-KPHLSHN-RQVNLG 264
Query: 194 RDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIFRHGGTLVLY 253
RDGLTHNML IH+HWK +++C GVPTVDM N+C +E+KT GKII R GG L L+
Sbjct: 265 RDGLTHNMLELIHSHWKRQRVCKVRCKGVPTVDMDNICHHIEEKTGGKIIHRVGGVLYLF 324
Query: 254 RGRNYNPKKRPVIPLMLWRPHEPVYPKLIKTTIEGLSIEETKEMRKRGLAVPVLTKLAKN 313
RGRNYN + RP P+MLW+P PVYPKLI+ EGL+ EE E+R +G + + KLAKN
Sbjct: 325 RGRNYNYRTRPQYPVMLWKPAAPVYPKLIQEAPEGLTKEEANELRMKGKNLLPICKLAKN 384
Query: 314 GYYGSLVPMVRDAFLVSELVRIDCQGLERSDYKKIGCKLR 353
G Y SLV VR AF S LV+IDC G+ SDYKK+G KL+
Sbjct: 385 GVYISLVDDVRHAFEGSILVKIDCTGMHESDYKKLGAKLK 424
>gi|297850808|ref|XP_002893285.1| hypothetical protein ARALYDRAFT_335585 [Arabidopsis lyrata subsp.
lyrata]
gi|297339127|gb|EFH69544.1| hypothetical protein ARALYDRAFT_335585 [Arabidopsis lyrata subsp.
lyrata]
Length = 565
Score = 248 bits (634), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 137/280 (48%), Positives = 173/280 (61%), Gaps = 23/280 (8%)
Query: 93 PFDFRYSYTETNQNVRPIGLREPKYSPFGPGRLEREWTGVCA-----------------P 135
PF+F++SY+ET + +P+G+REP + PF P + R WTG P
Sbjct: 112 PFEFQFSYSETPK-AKPVGIREPAFMPFAPPTMPRPWTGKAPLKKSKKKIPLFDSFNPPP 170
Query: 136 AADPKVKSAEEGAEDP-NLEEKRILVRERIQGEPLTNAERKALVE-KCHRNRTKRQINLG 193
A VK E P K + RE I GEPL E+ L++ H NR Q+NLG
Sbjct: 171 AGKSGVKYVEMPGPLPFGRYPKEGMNREEILGEPLKKWEKGMLIKPHMHDNR---QVNLG 227
Query: 194 RDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIFRHGGTLVLY 253
RDG THNML IH+HWK +++C GVPTVDM NVC LE+KT G+II R GG + L+
Sbjct: 228 RDGFTHNMLELIHSHWKRRRVCKVRCKGVPTVDMDNVCRVLEEKTGGEIIHRVGGVVYLF 287
Query: 254 RGRNYNPKKRPVIPLMLWRPHEPVYPKLIKTTIEGLSIEETKEMRKRGLAVPVLTKLAKN 313
RGRNYN + RP PLMLW+P PVYPKLI+ EGL+ EE E R +G ++ + KL+KN
Sbjct: 288 RGRNYNYRTRPQYPLMLWKPAAPVYPKLIQEVPEGLTKEEALEFRVKGKSLRPICKLSKN 347
Query: 314 GYYGSLVPMVRDAFLVSELVRIDCQGLERSDYKKIGCKLR 353
G Y SLV VRDAF +S LV++DC GLE SDYKKIG KL+
Sbjct: 348 GVYVSLVKDVRDAFELSPLVKVDCPGLEPSDYKKIGAKLK 387
>gi|194697426|gb|ACF82797.1| unknown [Zea mays]
Length = 611
Score = 248 bits (632), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 140/299 (46%), Positives = 183/299 (61%), Gaps = 33/299 (11%)
Query: 93 PFDFRYSYTETNQNVRPIGLREPKYSPFGPGRLEREWTGVCAPAADPKVKSAEEGA---- 148
PFDF++SY+E + P+ +REP + PF P + R WTG AP + K+ G
Sbjct: 131 PFDFQFSYSEAPR-APPLAIREPAFLPFAPPTMPRPWTGK-APLLTKEEKARRRGVRLHT 188
Query: 149 ----EDPN----------LEEKRIL-----------VRERIQGEPLTNAERKALVEKCHR 183
E P + E+R + RE + GEPLT +E +ALV K H
Sbjct: 189 PLGQETPQTVSAHGIMMEVRERRKMDLARVSPGDGRSREEVLGEPLTPSEVRALV-KPHI 247
Query: 184 NRTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKII 243
+ RQ+N+GRDGLTHNML IH HW+ E +++C GVPTVDMKN+C+ LE+K+ GK+I
Sbjct: 248 SHN-RQLNIGRDGLTHNMLEMIHCHWRRQEICKVRCRGVPTVDMKNLCYHLEEKSGGKVI 306
Query: 244 FRHGGTLVLYRGRNYNPKKRPVIPLMLWRPHEPVYPKLIKTTIEGLSIEETKEMRKRGLA 303
R GG + LYRGR+Y+PK RP PLML +P PVYPKLIK +G + EE EMR++G
Sbjct: 307 HRVGGVVFLYRGRHYDPKTRPRYPLMLRKPATPVYPKLIKEAPDGFTKEEADEMRRKGRD 366
Query: 304 VPVLTKLAKNGYYGSLVPMVRDAFLVSELVRIDCQGLERSDYKKIGCKLRSWFRISFLA 362
+ + KLAKNG Y +LV VRDAF S+LV+IDC+GL SDYKKIG KLR L+
Sbjct: 367 LLPICKLAKNGIYITLVKDVRDAFEGSDLVKIDCEGLNPSDYKKIGAKLRDLVPCVLLS 425
>gi|162462028|ref|NP_001105220.1| CRS2-associated factor 1, chloroplastic precursor [Zea mays]
gi|75147312|sp|Q84N49.1|CAF1P_MAIZE RecName: Full=CRS2-associated factor 1, chloroplastic; AltName:
Full=Chloroplastic group IIA intron splicing facilitator
CRS2-associated factor 1; Flags: Precursor
gi|30349367|gb|AAP22135.1| CRS2-associated factor 1 [Zea mays]
Length = 674
Score = 247 bits (630), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 133/280 (47%), Positives = 172/280 (61%), Gaps = 22/280 (7%)
Query: 93 PFDFRYSYTETNQNVRPIGLREPKYSPFGPGRLEREWTG----------------VCAPA 136
PF+F+YSYTE + RP+ LRE + PFGP R WTG PA
Sbjct: 91 PFEFQYSYTEAPR-ARPVALREAPFMPFGPEATPRPWTGRKPLPKSRKELPEFDSFVLPA 149
Query: 137 ADPK-VKSAEE-GAEDPNLEEK-RILVRERIQGEPLTNAERKALVEKCHRNRTKRQINLG 193
K VK + G +E + + + RE I GEPLT E LV+ + +KRQ+N+G
Sbjct: 150 PGKKGVKPVQSPGPFLAGMEPRYQSVSREDILGEPLTKEEVSELVKGSLK--SKRQLNMG 207
Query: 194 RDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIFRHGGTLVLY 253
RDGLTHNML +IH+HWK +IKC GV T+DM N+C QLE+K GK+I R GG + L+
Sbjct: 208 RDGLTHNMLENIHSHWKRKRVCKIKCKGVCTIDMDNICHQLEEKVGGKVIHRQGGVIFLF 267
Query: 254 RGRNYNPKKRPVIPLMLWRPHEPVYPKLIKTTIEGLSIEETKEMRKRGLAVPVLTKLAKN 313
RGRNYN + RP PLMLW+P PVYP+L+ GL+ +E EMR RG +P + KL KN
Sbjct: 268 RGRNYNYRTRPCFPLMLWKPVAPVYPRLVTKVPGGLTPDEATEMRTRGHQLPPICKLGKN 327
Query: 314 GYYGSLVPMVRDAFLVSELVRIDCQGLERSDYKKIGCKLR 353
G Y +LV VR+AF +LVR+DC GL +SD +KIG KL+
Sbjct: 328 GVYANLVNQVREAFEACDLVRVDCSGLNKSDCRKIGAKLK 367
>gi|356524038|ref|XP_003530640.1| PREDICTED: CRS2-associated factor 2, chloroplastic-like [Glycine
max]
Length = 593
Score = 244 bits (622), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 138/283 (48%), Positives = 171/283 (60%), Gaps = 28/283 (9%)
Query: 93 PFDFRYSYTETNQNVRPIGLREPKYSPFGPGRLEREWTGVCA------------------ 134
PF+F++SY+ET + +PI +REP + PF P + R WTG
Sbjct: 103 PFEFQFSYSETPK-AKPIAIREPAFLPFAPPTMPRPWTGKAPLKGKKSKKVPLFDSFNPP 161
Query: 135 PAADPKVKSAEEGAEDPN----LEEKRILVRERIQGEPLTNAERKALVEKCHRNRTKRQI 190
PA VK E P LE K RE I GEPL E LV+ RQ+
Sbjct: 162 PAGTKGVKLVEMPGPFPMGQFPLEGKS---REEILGEPLKKWEIHMLVKPMMS--YNRQV 216
Query: 191 NLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIFRHGGTL 250
NLGRDGLTHNML IH+HWK +I+CLGVPTVDM NVC +E+KT GKII R GG +
Sbjct: 217 NLGRDGLTHNMLELIHSHWKRRRVCKIRCLGVPTVDMDNVCHHIEEKTGGKIIHRVGGVV 276
Query: 251 VLYRGRNYNPKKRPVIPLMLWRPHEPVYPKLIKTTIEGLSIEETKEMRKRGLAVPVLTKL 310
L+RGRNYN RP P+MLW+P PVYPKLI+ GL+ +E E+R +G ++ + KL
Sbjct: 277 YLFRGRNYNYSTRPQYPVMLWKPAAPVYPKLIQDAPGGLTKDEADELRMKGKSLLPICKL 336
Query: 311 AKNGYYGSLVPMVRDAFLVSELVRIDCQGLERSDYKKIGCKLR 353
AKNG Y SLV VRDAF S LV+I+C+GL+ SDYKKIG KL+
Sbjct: 337 AKNGVYTSLVKDVRDAFEGSILVKINCKGLDPSDYKKIGAKLK 379
>gi|449434945|ref|XP_004135256.1| PREDICTED: LOW QUALITY PROTEIN: CRS2-associated factor 2,
chloroplastic-like [Cucumis sativus]
Length = 602
Score = 240 bits (613), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 136/280 (48%), Positives = 171/280 (61%), Gaps = 23/280 (8%)
Query: 93 PFDFRYSYTETNQNVRPIGLREPKYSPFGPGRLEREWTGVCAPAADPKVKSAEEGAEDP- 151
PF+F+YSY+ET + V+PI +REP + PF P + R WTG AP K K + +P
Sbjct: 148 PFEFQYSYSETPK-VKPIAIREPAFLPFAPPTMPRPWTG-KAPLKSSKKKIPLFDSFNPP 205
Query: 152 ------------------NLEEKRILVRERIQGEPLTNAERKALVEKCHRNRTKRQINLG 193
K RE I GEPL N E + LV K H + RQ+NLG
Sbjct: 206 PPGTKGVKLVQLPGPFPLGQHPKEGKSREEILGEPLKNWEIRMLV-KPHLSHN-RQVNLG 263
Query: 194 RDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIFRHGGTLVLY 253
RDGLTHNML IH+HWK +++C GVPTVDM N+C +E+KT GKII R GG L L+
Sbjct: 264 RDGLTHNMLELIHSHWKRQRVCKVRCKGVPTVDMDNICHHIEEKTGGKIIHRVGGVLYLF 323
Query: 254 RGRNYNPKKRPVIPLMLWRPHEPVYPKLIKTTIEGLSIEETKEMRKRGLAVPVLTKLAKN 313
RGRNYN + RP P+MLW+P PVYPKLI+ EGL+ +E +R +G + + KLAKN
Sbjct: 324 RGRNYNYRTRPQYPVMLWKPAAPVYPKLIQEAPEGLTKKEANVLRMKGKNLLPICKLAKN 383
Query: 314 GYYGSLVPMVRDAFLVSELVRIDCQGLERSDYKKIGCKLR 353
G Y SLV VR AF S LV+IDC G+ SDYKK+G KL+
Sbjct: 384 GVYISLVNDVRHAFEGSILVKIDCTGMHESDYKKLGAKLK 423
>gi|225425575|ref|XP_002267079.1| PREDICTED: CRS2-associated factor 2, chloroplastic [Vitis vinifera]
gi|297739063|emb|CBI28552.3| unnamed protein product [Vitis vinifera]
Length = 561
Score = 240 bits (612), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 133/281 (47%), Positives = 171/281 (60%), Gaps = 25/281 (8%)
Query: 93 PFDFRYSYTETNQNVRPIGLREPKYSPFGPGRLEREWTGVC-----------------AP 135
PF+F++SY+ET + +P+ +REP + PF P + R WTG P
Sbjct: 103 PFEFQFSYSETPK-AKPLAIREPAFLPFAPPTMPRPWTGKAPLKKSKKKIPLFDSFNPPP 161
Query: 136 AADPKVKSAEEGAEDPNLE---EKRILVRERIQGEPLTNAERKALVEKCHRNRTKRQINL 192
VK E P + E R RE I GEPL+ AE + LV+ + RQ+NL
Sbjct: 162 PGTKGVKRVEMPGPFPLGKFPVEGR--TREEILGEPLSKAEIRMLVKPYLSHN--RQVNL 217
Query: 193 GRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIFRHGGTLVL 252
GRDGLTHNML IH+HWK +++C GVPT+DM NVC LE+KT GKII R GG + L
Sbjct: 218 GRDGLTHNMLELIHSHWKRQRVCKVRCKGVPTIDMDNVCHHLEEKTGGKIIHRVGGVVYL 277
Query: 253 YRGRNYNPKKRPVIPLMLWRPHEPVYPKLIKTTIEGLSIEETKEMRKRGLAVPVLTKLAK 312
+RGRNYN + RP P+MLW+P PVYPKLI+ EGL+ E E+R +G + + +L K
Sbjct: 278 FRGRNYNYRTRPQYPVMLWKPAAPVYPKLIQEAPEGLTKFEADELRMKGKNLIPICRLVK 337
Query: 313 NGYYGSLVPMVRDAFLVSELVRIDCQGLERSDYKKIGCKLR 353
NG Y SLV VRDAF S LV+IDC+G+ SDYKKIG KL+
Sbjct: 338 NGVYISLVKDVRDAFEGSPLVKIDCKGMHASDYKKIGAKLK 378
>gi|449478585|ref|XP_004155360.1| PREDICTED: LOW QUALITY PROTEIN: CRS2-associated factor 2,
chloroplastic-like [Cucumis sativus]
Length = 603
Score = 240 bits (612), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 136/280 (48%), Positives = 171/280 (61%), Gaps = 23/280 (8%)
Query: 93 PFDFRYSYTETNQNVRPIGLREPKYSPFGPGRLEREWTGVCAPAADPKVKSAEEGAEDP- 151
PF+F+YSY+ET + V+PI +REP + PF P + R WTG AP K K + +P
Sbjct: 149 PFEFQYSYSETPK-VKPIAIREPAFLPFAPPTMPRPWTGK-APLKSSKKKIPLFDSFNPP 206
Query: 152 ------------------NLEEKRILVRERIQGEPLTNAERKALVEKCHRNRTKRQINLG 193
K RE I GEPL N E + LV K H + RQ+NLG
Sbjct: 207 PPGTKGVKLVQLPGPFPLGQHPKEGKSREEILGEPLKNWEIRMLV-KPHLSHN-RQVNLG 264
Query: 194 RDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIFRHGGTLVLY 253
RDGLTHNML IH+HWK +++C GVPTVDM N+C +E+KT GKII R GG L L+
Sbjct: 265 RDGLTHNMLELIHSHWKRQRVCKVRCKGVPTVDMDNICHHIEEKTGGKIIHRVGGVLYLF 324
Query: 254 RGRNYNPKKRPVIPLMLWRPHEPVYPKLIKTTIEGLSIEETKEMRKRGLAVPVLTKLAKN 313
RGRNYN + RP P+MLW+P PVYPKLI+ EGL+ +E +R +G + + KLAKN
Sbjct: 325 RGRNYNYRTRPQYPVMLWKPAAPVYPKLIQEAPEGLTKKEANVLRMKGKNLLPICKLAKN 384
Query: 314 GYYGSLVPMVRDAFLVSELVRIDCQGLERSDYKKIGCKLR 353
G Y SLV VR AF S LV+IDC G+ SDYKK+G KL+
Sbjct: 385 GVYISLVNDVRHAFEGSILVKIDCTGMHESDYKKLGAKLK 424
>gi|222618317|gb|EEE54449.1| hypothetical protein OsJ_01538 [Oryza sativa Japonica Group]
Length = 587
Score = 240 bits (612), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 137/283 (48%), Positives = 171/283 (60%), Gaps = 32/283 (11%)
Query: 109 PIGLREPKYSPFGPGRLEREWTGVCAPAADPKVKSAEEGA--------EDP--------- 151
P+ +REP + PF P + R WTG AP + K+ G E P
Sbjct: 122 PVAIREPAFLPFAPPTMPRPWTGK-APLLTKEEKARRRGVRLHTPLGEEAPRTVSAHGIM 180
Query: 152 -------NLEEKRIL-----VRERIQGEPLTNAERKALVEKCHRNRTKRQINLGRDGLTH 199
L+ R+ RE + GEPLT AE + LV K H + RQ+N+GRDGLTH
Sbjct: 181 MEVRGRRKLDLARVSPGDGRSREEVLGEPLTAAEVRDLV-KPHISHN-RQLNIGRDGLTH 238
Query: 200 NMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIFRHGGTLVLYRGRNYN 259
NML IH HW+ E +++C GVPTVDMKN+C+ LE+K+ GK+I R GG + LYRGRNYN
Sbjct: 239 NMLEMIHCHWRRQEICKVRCRGVPTVDMKNLCYHLEEKSGGKVIHRVGGVVFLYRGRNYN 298
Query: 260 PKKRPVIPLMLWRPHEPVYPKLIKTTIEGLSIEETKEMRKRGLAVPVLTKLAKNGYYGSL 319
P+ RP PLMLW+P PVYPKLI+ EGL+ EE EMR+RG + + KLAKNG Y L
Sbjct: 299 PRTRPRYPLMLWKPATPVYPKLIQEAPEGLTKEEADEMRRRGKDLLPICKLAKNGIYIYL 358
Query: 320 VPMVRDAFLVSELVRIDCQGLERSDYKKIGCKLRSWFRISFLA 362
V VRDAF S+LV+IDC+GL SDYKKIG KLR L+
Sbjct: 359 VRDVRDAFEGSDLVKIDCEGLNPSDYKKIGAKLRDLVPCVLLS 401
>gi|359473240|ref|XP_003631275.1| PREDICTED: LOW QUALITY PROTEIN: CRS2-associated factor 2,
chloroplastic-like [Vitis vinifera]
Length = 560
Score = 239 bits (609), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 133/281 (47%), Positives = 170/281 (60%), Gaps = 25/281 (8%)
Query: 93 PFDFRYSYTETNQNVRPIGLREPKYSPFGPGRLEREWTGVC-----------------AP 135
PF+F++SY+ET + +P+ +REP + PF P + R WTG P
Sbjct: 103 PFEFQFSYSETPK-AKPLAIREPAFLPFAPPTMPRPWTGKAPLKKSKKKIPLFDSFNPPP 161
Query: 136 AADPKVKSAEEGAEDPNLE---EKRILVRERIQGEPLTNAERKALVEKCHRNRTKRQINL 192
VK E P + E R RE I GEPL+ AE + LV+ + RQ+NL
Sbjct: 162 PGTKGVKRVEMPGPFPLGKFPVEGR--TREEILGEPLSKAEIRMLVKPYLSHN--RQVNL 217
Query: 193 GRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIFRHGGTLVL 252
GRDGLTHNML IH+HWK ++ C GVPT+DM NVC LE+KT GKII R GG + L
Sbjct: 218 GRDGLTHNMLELIHSHWKRQRVCKVWCKGVPTIDMDNVCHHLEEKTGGKIIHRVGGVVYL 277
Query: 253 YRGRNYNPKKRPVIPLMLWRPHEPVYPKLIKTTIEGLSIEETKEMRKRGLAVPVLTKLAK 312
+RGRNYN + RP P+MLW+P PVYPKLI+ EGL+ E E+R +G + + +L K
Sbjct: 278 FRGRNYNYRTRPQYPVMLWKPAAPVYPKLIQEAPEGLTKFEADELRMKGXNLIPICRLVK 337
Query: 313 NGYYGSLVPMVRDAFLVSELVRIDCQGLERSDYKKIGCKLR 353
NG Y SLV VRDAF S LV+IDC+G+ SDYKKIG KL+
Sbjct: 338 NGVYISLVKDVRDAFEGSPLVKIDCKGMHASDYKKIGAKLK 378
>gi|168045030|ref|XP_001774982.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162673729|gb|EDQ60248.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 295
Score = 237 bits (605), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 131/286 (45%), Positives = 170/286 (59%), Gaps = 23/286 (8%)
Query: 96 FRYSYTETNQNVRPIGLREPKYSPFG-----------PGRLER-------EWTGVCAPAA 137
+++SY+ET + P+G REP YSPFG P ++++ W +P A
Sbjct: 1 YQFSYSETPKET-PLGYREPLYSPFGHEGVTRPYLGRPSKMKKTKKIRAESWGSFDSPRA 59
Query: 138 DPK-VKSAEEGAEDPNLEEKRILVRERIQGEPLTNAERKALVEKCHRNRTKRQINLGRDG 196
D VK P + R +I G PLT AE + LV +C + RQ+NLGRDG
Sbjct: 60 DKNDVKPIHRSGSHPE-PQPLGKSRAKILGAPLTTAEVEELVMQCQKE--DRQLNLGRDG 116
Query: 197 LTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIFRHGGTLVLYRGR 256
THNML +H++WK + VRIKC GVPTVDM NVC LEDKT GKII R GG + L+RGR
Sbjct: 117 FTHNMLASVHDYWKRRQVVRIKCKGVPTVDMDNVCTVLEDKTGGKIISRAGGVVYLFRGR 176
Query: 257 NYNPKKRPVIPLMLWRPHEPVYPKLIKTTIEGLSIEETKEMRKRGLAVPVLTKLAKNGYY 316
NYN RP IPLMLWRP PVYPKLI+ EGL++EE +R+RG +P + L KNG Y
Sbjct: 177 NYNYNTRPKIPLMLWRPPAPVYPKLIQRAPEGLTVEEADSLRRRGRKIPAICHLGKNGVY 236
Query: 317 GSLVPMVRDAFLVSELVRIDCQGLERSDYKKIGCKLRSWFRISFLA 362
+LV VR+AF LV++DC+ + D +KIG KL+ L+
Sbjct: 237 LNLVRDVRNAFQADNLVKVDCEKMNTHDLRKIGAKLKDLVPCVLLS 282
>gi|224110940|ref|XP_002315689.1| predicted protein [Populus trichocarpa]
gi|222864729|gb|EEF01860.1| predicted protein [Populus trichocarpa]
Length = 506
Score = 235 bits (600), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 133/290 (45%), Positives = 170/290 (58%), Gaps = 43/290 (14%)
Query: 93 PFDFRYSYTETNQNVRPIGLREPKYSPFGPGRLEREWTG--------------------- 131
PF+F++SY+ET + V+P+ +REP + PF P + R WTG
Sbjct: 49 PFEFQFSYSETPK-VKPLAIREPAFLPFAPPTMPRPWTGKPPLKTSKKKIPVFDSFNPPP 107
Query: 132 --------VCAPAADPKVKSAEEGAEDPNLEEKRILVRERIQGEPLTNAERKALVEKCHR 183
V P P K EEG RE I GEPL E K L+ K H
Sbjct: 108 AGKKGVKYVEMPGPYPFGKFPEEGKS-----------REEILGEPLKTWEIKLLI-KPHL 155
Query: 184 NRTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKII 243
+ RQ+NLG DGLTHNML +H+HWK +++C GVPTVDM NVC LE+KT GKII
Sbjct: 156 S-DNRQVNLGEDGLTHNMLELVHSHWKRRRVCKVRCKGVPTVDMDNVCRHLEEKTGGKII 214
Query: 244 FRHGGTLVLYRGRNYNPKKRPVIPLMLWRPHEPVYPKLIKTTIEGLSIEETKEMRKRGLA 303
R GG + L+RGRNYN + RP P+MLW+P PVYPKLI+ EGL+ + E RK+G
Sbjct: 215 HRVGGVVYLFRGRNYNYRTRPQYPVMLWKPATPVYPKLIQEAPEGLTKAQADEFRKKGKN 274
Query: 304 VPVLTKLAKNGYYGSLVPMVRDAFLVSELVRIDCQGLERSDYKKIGCKLR 353
+ + KLAKNG Y +LV VR AF S LV++DC+G+E SDYKK+G KL+
Sbjct: 275 LLPICKLAKNGVYITLVRDVRAAFEGSPLVKVDCKGMEPSDYKKLGAKLK 324
>gi|168014860|ref|XP_001759969.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162688719|gb|EDQ75094.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 297
Score = 231 bits (588), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 123/264 (46%), Positives = 162/264 (61%), Gaps = 21/264 (7%)
Query: 91 DLPFDFRYSYTETNQNVRPIGLREPKYSPFGPGRLEREWTGVCAPAADPKVKSAEEGAED 150
+LP F YS + N+ P+G REP YSPFGP + R WTG PK+ +
Sbjct: 30 ELPCQFSYS---EHPNIPPLGFREPVYSPFGPEGMARPWTGKQPNVEGPKLGRS------ 80
Query: 151 PNLEEKRILVRERIQGEPLTNAERKALVEKCHRNRTKRQINLGRDGLTHNMLNDIHNHWK 210
RE I GEPLT E + LV + R R+++LG+DGLTHNML +H HWK
Sbjct: 81 ----------REEILGEPLTKDEVRELVGRACAER--RRLDLGKDGLTHNMLELLHRHWK 128
Query: 211 HAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIFRHGGTLVLYRGRNYNPKKRPVIPLML 270
RIKC GVPTVDM N+C +E+K+ GKII R G L ++RGRNYN RP IP+ML
Sbjct: 129 RRRVCRIKCYGVPTVDMDNLCRVIEEKSGGKIIRRSQGMLYVFRGRNYNWNTRPQIPIML 188
Query: 271 WRPHEPVYPKLIKTTIEGLSIEETKEMRKRGLAVPVLTKLAKNGYYGSLVPMVRDAFLVS 330
W+P P+YP ++++ EGLS +E +R G + L +L + G Y +LV MV+DAF +
Sbjct: 189 WKPPAPIYPSVVQSVPEGLSEKEADNLRALGRRIHCLCRLERAGVYINLVKMVKDAFEID 248
Query: 331 ELVRIDCQGLERSDYKKIGCKLRS 354
ELV+IDC+ L+RSD KK+G KLR
Sbjct: 249 ELVKIDCRELDRSDMKKVGAKLRD 272
>gi|255568848|ref|XP_002525395.1| conserved hypothetical protein [Ricinus communis]
gi|223535358|gb|EEF37033.1| conserved hypothetical protein [Ricinus communis]
Length = 561
Score = 229 bits (584), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 127/280 (45%), Positives = 177/280 (63%), Gaps = 23/280 (8%)
Query: 93 PFDFRYSYTETNQNVRPIGLREPKYSPFGPGRLEREWTGVCAPA-----------ADPKV 141
PF+F++SY+ET + V+P+ +REP + PFGP + R WTG AP ++
Sbjct: 99 PFEFQFSYSETPK-VKPLAIREPAFLPFGPPTMPRPWTGK-APLKKSKKKKIPLFSNSIP 156
Query: 142 KSAEEGA---EDPNLEE-----KRILVRERIQGEPLTNAERKALVEKCHRNRTKRQINLG 193
A+EG E P + + + R I G+PLT E K LV+ + RQ+NLG
Sbjct: 157 NDAKEGVKYFEMPGDLQFGKFPEEVKSRREILGKPLTRWEIKQLVKPLLSD--NRQVNLG 214
Query: 194 RDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIFRHGGTLVLY 253
RDGLTHNML IH+HW+ + +++C G+PTVDM N+C LE++T GKII+R GG + L+
Sbjct: 215 RDGLTHNMLELIHSHWRRSPVCKVRCKGIPTVDMNNICRHLEERTGGKIIYRIGGVVYLF 274
Query: 254 RGRNYNPKKRPVIPLMLWRPHEPVYPKLIKTTIEGLSIEETKEMRKRGLAVPVLTKLAKN 313
GRNY+ + R P+MLW+P PVYPKLI+ EGL+ E E R++G + + KLAKN
Sbjct: 275 CGRNYDYRSRVRYPVMLWKPAAPVYPKLIQDAPEGLTKAEADEFREKGKNLLPICKLAKN 334
Query: 314 GYYGSLVPMVRDAFLVSELVRIDCQGLERSDYKKIGCKLR 353
G Y +LV VR+AF S LV+IDC+G+ SDYKK+G KL+
Sbjct: 335 GVYITLVRDVRNAFEGSPLVKIDCKGMNPSDYKKLGAKLK 374
>gi|194688996|gb|ACF78582.1| unknown [Zea mays]
gi|194700546|gb|ACF84357.1| unknown [Zea mays]
gi|223974875|gb|ACN31625.1| unknown [Zea mays]
Length = 560
Score = 221 bits (564), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 105/193 (54%), Positives = 134/193 (69%), Gaps = 2/193 (1%)
Query: 161 RERIQGEPLTNAERKALVEKCHRNRTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCL 220
RE I GEPLT E LV+ + +KRQ+N+GRDGLTHNML +IH+HWK +IKC
Sbjct: 63 REDILGEPLTKEEVSELVKGSLK--SKRQLNMGRDGLTHNMLENIHSHWKRKRVCKIKCK 120
Query: 221 GVPTVDMKNVCFQLEDKTFGKIIFRHGGTLVLYRGRNYNPKKRPVIPLMLWRPHEPVYPK 280
GV T+DM N+C QLE+K GK+I R GG + L+RGRNYN + RP PLMLW+P PVYP+
Sbjct: 121 GVCTIDMDNICHQLEEKVGGKVIHRQGGVIFLFRGRNYNYRTRPCFPLMLWKPVAPVYPR 180
Query: 281 LIKTTIEGLSIEETKEMRKRGLAVPVLTKLAKNGYYGSLVPMVRDAFLVSELVRIDCQGL 340
L+ GL+ +E EMR RG +P + KL KNG Y +LV VR+AF +LVR+DC GL
Sbjct: 181 LVTKVPGGLTPDEATEMRTRGHQLPPICKLGKNGVYANLVNQVREAFEACDLVRVDCSGL 240
Query: 341 ERSDYKKIGCKLR 353
+SD +KIG KL+
Sbjct: 241 NKSDCRKIGAKLK 253
>gi|147799432|emb|CAN76866.1| hypothetical protein VITISV_012308 [Vitis vinifera]
Length = 393
Score = 209 bits (532), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 114/238 (47%), Positives = 146/238 (61%), Gaps = 21/238 (8%)
Query: 92 LPFDFRYSYTETNQNVRPIGLREPKYSPFGPGRLEREWTGVCA----------------- 134
+PF+ RYSYTET + V+PI LREP + PFGP + R WTG
Sbjct: 150 VPFELRYSYTETPK-VKPIALREPPFLPFGPDTMPRPWTGRAPLPPSKKKLKEFDSFQLP 208
Query: 135 PAADPKVKSAEE-GAEDPNLEEKRILVRERIQGEPLTNAERKALVEKCHRNRTKRQINLG 193
P +VK + G P + + RE I GEPLT E K LV+ C + +KRQ+N+G
Sbjct: 209 PPGKKRVKPVQAPGPFLPGSGPRYVRSREEILGEPLTEEEIKELVQGCVK--SKRQLNMG 266
Query: 194 RDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIFRHGGTLVLY 253
RDGLTHNML++IH HWK +IKC GV TVDM NV QLE+KT GK+I+ GG L L+
Sbjct: 267 RDGLTHNMLDNIHAHWKRRRVCKIKCKGVCTVDMDNVRQQLEEKTGGKVIYGKGGVLFLF 326
Query: 254 RGRNYNPKKRPVIPLMLWRPHEPVYPKLIKTTIEGLSIEETKEMRKRGLAVPVLTKLA 311
RGRNYN + RP PLMLW+P PVYP+L++ EGL++EE MRK+G + + KL
Sbjct: 327 RGRNYNYRNRPRFPLMLWKPVTPVYPRLVQRAPEGLTLEEAGAMRKKGRKLIPICKLG 384
>gi|413921150|gb|AFW61082.1| hypothetical protein ZEAMMB73_173916 [Zea mays]
Length = 222
Score = 171 bits (434), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 84/148 (56%), Positives = 102/148 (68%), Gaps = 14/148 (9%)
Query: 89 YTDLPFDFRYSYTETNQNVRPIGLREP-KYSPFGPGRLEREWTGVCAPAADPKVKSAEEG 147
++DLPFDFRYSY+ET+ RPIG REP ++SPFGPGRL+R W G A +V G
Sbjct: 73 HSDLPFDFRYSYSETDPTWRPIGFREPTRFSPFGPGRLDRPWDGTAAA----RVGDYASG 128
Query: 148 AEDPNLEEKRILVRERIQGEPLTNAERKALVEKCHRNRTKRQINLGRDGLTHNMLNDIHN 207
E +RE + GEPL+ E ALVE+ + RQINLG+ G+THNML+DIHN
Sbjct: 129 DE---------RIREEVLGEPLSEEEVAALVERYRHSDCSRQINLGKGGVTHNMLDDIHN 179
Query: 208 HWKHAEAVRIKCLGVPTVDMKNVCFQLE 235
HWK AEAVRIKCLGVPT+DM N+CF LE
Sbjct: 180 HWKRAEAVRIKCLGVPTLDMDNICFHLE 207
>gi|297739073|emb|CBI28562.3| unnamed protein product [Vitis vinifera]
Length = 422
Score = 155 bits (392), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 90/193 (46%), Positives = 109/193 (56%), Gaps = 38/193 (19%)
Query: 161 RERIQGEPLTNAERKALVEKCHRNRTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCL 220
RE I GEPL+ AE + LV+ + RQ+NLGRDGLTHNML IH+HWK ++ C
Sbjct: 55 REEILGEPLSKAEIRMLVKPYLSHN--RQVNLGRDGLTHNMLELIHSHWKRQRVCKVWCK 112
Query: 221 GVPTVDMKNVCFQLEDKTFGKIIFRHGGTLVLYRGRNYNPKKRPVIPLMLWRPHEPVYPK 280
GVPT+DM NVC LE+KT GKII R GG + L+RGRNYN L E + P
Sbjct: 113 GVPTIDMDNVCHHLEEKTGGKIIHRVGGVVYLFRGRNYN---------YLANEGENLIP- 162
Query: 281 LIKTTIEGLSIEETKEMRKRGLAVPVLTKLAKNGYYGSLVPMVRDAFLVSELVRIDCQGL 340
+ +L KNG Y SLV VRDAF S LV+IDC+G+
Sbjct: 163 --------------------------ICRLVKNGVYISLVKDVRDAFEGSPLVKIDCKGM 196
Query: 341 ERSDYKKIGCKLR 353
SDYKKIG KL+
Sbjct: 197 HASDYKKIGAKLK 209
>gi|147771140|emb|CAN74182.1| hypothetical protein VITISV_034260 [Vitis vinifera]
Length = 306
Score = 130 bits (328), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 67/127 (52%), Positives = 86/127 (67%)
Query: 227 MKNVCFQLEDKTFGKIIFRHGGTLVLYRGRNYNPKKRPVIPLMLWRPHEPVYPKLIKTTI 286
+K+ +KT GKII R GG + L+RGRNYN + RP P+MLW+P PVYPKLI+
Sbjct: 10 LKDQLIMHMEKTGGKIIHRVGGVVYLFRGRNYNYRTRPQYPVMLWKPAAPVYPKLIQEAP 69
Query: 287 EGLSIEETKEMRKRGLAVPVLTKLAKNGYYGSLVPMVRDAFLVSELVRIDCQGLERSDYK 346
EGL+ E E+R +G + + +L KNG Y SLV VRDAF S LV+IDC+G+ SDYK
Sbjct: 70 EGLTKFEADELRMKGKNLIPICRLVKNGVYISLVKDVRDAFEGSPLVKIDCKGMHASDYK 129
Query: 347 KIGCKLR 353
KIG KL+
Sbjct: 130 KIGAKLK 136
>gi|147780327|emb|CAN67999.1| hypothetical protein VITISV_025803 [Vitis vinifera]
Length = 331
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 68/167 (40%), Positives = 90/167 (53%), Gaps = 25/167 (14%)
Query: 93 PFDFRYSYTETNQNVRPIGLREPKYSPFGPGRLEREWTGVC-----------------AP 135
PF+F++SY+ET + +P+ +REP + PF P + R WTG P
Sbjct: 103 PFEFQFSYSETPK-AKPLAIREPAFLPFAPPTMPRPWTGKAPLKKSKKKIPLFDSFNPPP 161
Query: 136 AADPKVKSAEEGAEDPNLE---EKRILVRERIQGEPLTNAERKALVEKCHRNRTKRQINL 192
VK E P + E R RE I GEPL+ AE + LV+ + RQ+NL
Sbjct: 162 PGTKGVKRVEMPGPFPLGKFPVEGR--TREEILGEPLSKAEIRMLVKPYLSH--NRQVNL 217
Query: 193 GRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTF 239
GRDGLTHNML IH+HWK +++C GVPT+DM NVC LE T+
Sbjct: 218 GRDGLTHNMLELIHSHWKRQRVCKVRCKGVPTIDMDNVCHHLEHHTY 264
>gi|414884471|tpg|DAA60485.1| TPA: hypothetical protein ZEAMMB73_919812, partial [Zea mays]
Length = 250
Score = 117 bits (293), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 71/162 (43%), Positives = 91/162 (56%), Gaps = 22/162 (13%)
Query: 93 PFDFRYSYTETNQNVRPIGLREPKYSPFGPGRLEREWTG----------------VCAPA 136
PF+F+YSYTE + RP+ LRE + PFGP R WTG PA
Sbjct: 91 PFEFQYSYTEAPR-ARPVALREAPFMPFGPEATPRPWTGRKPLPKSRKELPEFDSFVLPA 149
Query: 137 ADPK-VKSAEE-GAEDPNLEEK-RILVRERIQGEPLTNAERKALVEKCHRNRTKRQINLG 193
K VK + G +E + + + RE I GEPLT E LV+ ++KRQ+N+G
Sbjct: 150 PGKKGVKPVQSPGPFLAGMEPRYQSVSREDILGEPLTKEEVSELVKGS--LKSKRQLNMG 207
Query: 194 RDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLE 235
RDGLTHNML +IH+HWK +IKC GV T+DM N+C QLE
Sbjct: 208 RDGLTHNMLENIHSHWKRKRVCKIKCKGVCTIDMDNICHQLE 249
>gi|414884469|tpg|DAA60483.1| TPA: CRS2-associated factor 1, Precursor [Zea mays]
Length = 392
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 44/85 (51%), Positives = 58/85 (68%)
Query: 269 MLWRPHEPVYPKLIKTTIEGLSIEETKEMRKRGLAVPVLTKLAKNGYYGSLVPMVRDAFL 328
MLW+P PVYP+L+ GL+ +E EMR RG +P + KL KNG Y +LV VR+AF
Sbjct: 1 MLWKPVAPVYPRLVTKVPGGLTPDEATEMRTRGHQLPPICKLGKNGVYANLVNQVREAFE 60
Query: 329 VSELVRIDCQGLERSDYKKIGCKLR 353
+LVR+DC GL +SD +KIG KL+
Sbjct: 61 ACDLVRVDCSGLNKSDCRKIGAKLK 85
>gi|413918579|gb|AFW58511.1| CFM2 [Zea mays]
Length = 1039
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 50/75 (66%)
Query: 185 RTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIF 244
R ++++ +G+ G+T ++N IH W++AE V+++C V ++M+ LE KT G +I+
Sbjct: 157 RVRKRLKVGKAGITEGIVNGIHERWRNAEVVKLRCEDVWAMNMRRTHEILERKTGGLVIW 216
Query: 245 RHGGTLVLYRGRNYN 259
R G T++LYRG NY
Sbjct: 217 RSGSTIILYRGTNYT 231
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 68/140 (48%), Gaps = 17/140 (12%)
Query: 136 AADPKVKSAEEGAEDPNLEEKRILVRERIQGEPLTNAERKALVEKCHRN-------RTKR 188
A D + + ++ AE E+ L+ E + PL+ AE + + + R + K+
Sbjct: 589 AKDVETRLSQAIAEKAKAEK---LIEELEKASPLSKAEVRETISEDERYMLRKVGLKMKQ 645
Query: 189 QINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKII----F 244
+ LGR G+ + ++H HWK+ E V+I C D++ LE ++ G ++
Sbjct: 646 FLLLGRRGVFDGTIENMHLHWKYRELVKIICKEHRLEDVEYAARTLEAESGGILVAVEKV 705
Query: 245 RHGGTLVLYRGRNYNPKKRP 264
G +++YRG+NY KRP
Sbjct: 706 SKGHAIIVYRGKNY---KRP 722
>gi|154986383|gb|ABS89145.1| CFM2 [Zea mays]
Length = 942
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 50/74 (67%)
Query: 185 RTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIF 244
R ++++ +G+ G+T ++N IH W++AE V+++C V ++M+ LE KT G +I+
Sbjct: 60 RVRKRLKVGKAGITEGIVNGIHERWRNAEVVKLRCEDVWAMNMRRTHEILERKTGGLVIW 119
Query: 245 RHGGTLVLYRGRNY 258
R G T++LYRG NY
Sbjct: 120 RSGSTIILYRGTNY 133
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 68/140 (48%), Gaps = 17/140 (12%)
Query: 136 AADPKVKSAEEGAEDPNLEEKRILVRERIQGEPLTNAERKALVEKCHRN-------RTKR 188
A D + + ++ AE E+ L+ E + PL+ AE + + + R + K+
Sbjct: 492 AKDVETRLSQAIAEKAKAEK---LIEELEKASPLSKAEVRETISEDERYMLRKVGLKMKQ 548
Query: 189 QINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKII----F 244
+ LGR G+ + ++H HWK+ E V+I C D++ LE ++ G ++
Sbjct: 549 FLLLGRRGVFDGTIENMHLHWKYRELVKIICKEHRLEDVEYAARTLEAESGGILVAVEKV 608
Query: 245 RHGGTLVLYRGRNYNPKKRP 264
G +++YRG+NY KRP
Sbjct: 609 SKGHAIIVYRGKNY---KRP 625
>gi|154986385|gb|ABS89146.1| CFM2 alternative polyadenylation form 1 [Zea mays]
Length = 668
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 50/74 (67%)
Query: 185 RTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIF 244
R ++++ +G+ G+T ++N IH W++AE V+++C V ++M+ LE KT G +I+
Sbjct: 144 RVRKRLKVGKAGITEGIVNGIHERWRNAEVVKLRCEDVWAMNMRRTHEILERKTGGLVIW 203
Query: 245 RHGGTLVLYRGRNY 258
R G T++LYRG NY
Sbjct: 204 RSGSTIILYRGTNY 217
>gi|413918578|gb|AFW58510.1| CFM2 alternative polyadenylation form 1 [Zea mays]
Length = 681
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 50/75 (66%)
Query: 185 RTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIF 244
R ++++ +G+ G+T ++N IH W++AE V+++C V ++M+ LE KT G +I+
Sbjct: 157 RVRKRLKVGKAGITEGIVNGIHERWRNAEVVKLRCEDVWAMNMRRTHEILERKTGGLVIW 216
Query: 245 RHGGTLVLYRGRNYN 259
R G T++LYRG NY
Sbjct: 217 RSGSTIILYRGTNYT 231
>gi|154986387|gb|ABS89147.1| CFM2 alternative polyadenylation form 2 [Zea mays]
Length = 783
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 50/75 (66%)
Query: 185 RTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIF 244
R ++++ +G+ G+T ++N IH W++AE V+++C V ++M+ LE KT G +I+
Sbjct: 150 RVRKRLKVGKAGITEGIVNGIHERWRNAEVVKLRCEDVWAMNMRRTHEILERKTGGLVIW 209
Query: 245 RHGGTLVLYRGRNYN 259
R G T++LYRG NY
Sbjct: 210 RSGSTIILYRGTNYT 224
Score = 50.8 bits (120), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 68/140 (48%), Gaps = 17/140 (12%)
Query: 136 AADPKVKSAEEGAEDPNLEEKRILVRERIQGEPLTNAERKALVEKCHRN-------RTKR 188
A D + + ++ AE E+ L+ E + PL+ AE + + + R + K+
Sbjct: 582 AKDVETRLSQAIAEKAKAEK---LIEELEKASPLSKAEVRETISEDERYMLRKVGLKMKQ 638
Query: 189 QINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKII----F 244
+ LGR G+ + ++H HWK+ E V+I C D++ LE ++ G ++
Sbjct: 639 FLLLGRRGVFDGTIENMHLHWKYRELVKIICKEHRLEDVEYAARTLEAESGGILVAVEKV 698
Query: 245 RHGGTLVLYRGRNYNPKKRP 264
G +++YRG+NY KRP
Sbjct: 699 SKGHAIIVYRGKNY---KRP 715
>gi|242076096|ref|XP_002447984.1| hypothetical protein SORBIDRAFT_06g019250 [Sorghum bicolor]
gi|241939167|gb|EES12312.1| hypothetical protein SORBIDRAFT_06g019250 [Sorghum bicolor]
Length = 800
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 50/74 (67%)
Query: 185 RTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIF 244
R ++++ +G+ G+T ++N IH W++AE V+++C V ++M+ LE KT G +I+
Sbjct: 159 RVRKRLKVGKAGITEGIVNGIHERWRNAEVVKLRCEDVWAMNMRRTHEILERKTGGLVIW 218
Query: 245 RHGGTLVLYRGRNY 258
R G T++LYRG NY
Sbjct: 219 RSGSTIILYRGTNY 232
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 55/112 (49%), Gaps = 11/112 (9%)
Query: 159 LVRERIQGEPLTNAERKALVEKCHRN-------RTKRQINLGRDGLTHNMLNDIHNHWKH 211
L+ E + PL+ AE + + + R + K+ + LGR G+ + ++H HWK+
Sbjct: 614 LLEELEKASPLSKAEVRETISEDERYMLRKVGLKMKQFLLLGRRGVFDGTIENMHLHWKY 673
Query: 212 AEAVRIKCLGVPTVDMKNVCFQLEDKTFGKII----FRHGGTLVLYRGRNYN 259
E V+I C D++ LE ++ G ++ G +++YRG+NY
Sbjct: 674 RELVKIICKEHRLEDVEYAARTLEAESGGILVAVEKVSKGHAIIVYRGKNYQ 725
>gi|326497411|dbj|BAK05795.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 1070
Score = 71.6 bits (174), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 50/74 (67%)
Query: 185 RTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIF 244
R ++++ +G+ G+T ++N IH W++AE V+I+C + ++M+ LE KT G +I+
Sbjct: 156 RLRKRLKVGKPGVTEGIVNGIHERWRNAELVKIRCDDISAMNMRRTHEVLERKTGGLVIW 215
Query: 245 RHGGTLVLYRGRNY 258
R G T++LYRG NY
Sbjct: 216 RSGSTIILYRGTNY 229
Score = 45.4 bits (106), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 4/72 (5%)
Query: 192 LGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKII----FRHG 247
LGR G+ + ++H HWK+ E V+I C D+ LE ++ G ++ G
Sbjct: 671 LGRRGVFDGTIENMHLHWKYRELVKIICKEHSMEDVTYAARTLEAESGGILVAVERVSKG 730
Query: 248 GTLVLYRGRNYN 259
+++YRG+NY
Sbjct: 731 HAIIMYRGKNYQ 742
>gi|116310121|emb|CAH67138.1| OSIGBa0130P02.2 [Oryza sativa Indica Group]
Length = 1048
Score = 70.9 bits (172), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 49/74 (66%)
Query: 185 RTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIF 244
R + ++ +G+ G+T ++N IH W++AE V+I+C V ++MK LE KT G +I+
Sbjct: 155 RLRNRLKVGKAGVTEGIVNGIHERWRNAELVKIRCDDVSAMNMKRTHEILERKTGGLVIW 214
Query: 245 RHGGTLVLYRGRNY 258
R G T++LYRG +Y
Sbjct: 215 RSGSTIILYRGTDY 228
Score = 42.7 bits (99), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 48/206 (23%), Positives = 85/206 (41%), Gaps = 24/206 (11%)
Query: 59 NPTL-NPNKNFKKKSKPQYRPPSSLDAPKKKYTDLPFDFRYSYTETNQNVRPIGL-REPK 116
N T+ NP NF K S PQ + K TD+ D Y + +++ + R
Sbjct: 520 NSTISNPKLNFDK-STPQN------SSKLKMATDVSLDGHECYEKKHKDETAVSDNRAES 572
Query: 117 YSPFGPGRLEREWTGVCAPAADPKVKSAEEGAEDPNLEEKRILVRERIQGEPLTNAERKA 176
+ F R + K+ E + +P+ E R ++ E E +
Sbjct: 573 LNVFTQNVEARLSQAIAEKEKTEKLIEELEMSSEPSRAETREVISE----------EERY 622
Query: 177 LVEKCHRNRTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLED 236
++ K + K + LGR G+ + ++H HWK+ E V+I C D++ LE
Sbjct: 623 MLRKVGL-KMKSFLLLGRRGVFDGTVENMHLHWKYRELVKIICKEHNIKDVEYAARTLEA 681
Query: 237 KTFGKII----FRHGGTLVLYRGRNY 258
++ G ++ +++YRG+NY
Sbjct: 682 ESGGILVAVERVSKAHAIIIYRGKNY 707
>gi|21741981|emb|CAD41031.1| OSJNBa0060P14.12 [Oryza sativa Japonica Group]
gi|32492164|emb|CAE04823.1| OSJNBb0048E02.3 [Oryza sativa Japonica Group]
Length = 1012
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 49/74 (66%)
Query: 185 RTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIF 244
R + ++ +G+ G+T ++N IH W++AE V+I+C V ++MK LE KT G +I+
Sbjct: 155 RLRNRLKVGKAGVTEGIVNGIHERWRNAELVKIRCDDVSAMNMKRTHEILERKTGGLVIW 214
Query: 245 RHGGTLVLYRGRNY 258
R G T++LYRG +Y
Sbjct: 215 RSGSTIILYRGTDY 228
Score = 43.5 bits (101), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 48/206 (23%), Positives = 85/206 (41%), Gaps = 24/206 (11%)
Query: 59 NPTL-NPNKNFKKKSKPQYRPPSSLDAPKKKYTDLPFDFRYSYTETNQNVRPIGL-REPK 116
N T+ NP NF K S PQ + K TD+ D Y + +++ + R
Sbjct: 484 NSTISNPKLNFDK-STPQN------SSKLKMATDVSLDGHECYEKKHKDETAVSDNRAES 536
Query: 117 YSPFGPGRLEREWTGVCAPAADPKVKSAEEGAEDPNLEEKRILVRERIQGEPLTNAERKA 176
+ F R + K+ E + +P+ E R ++ E E +
Sbjct: 537 LNVFAQNVEARLSQAIAEKEKTEKLIEELEMSSEPSRAETREVISE----------EERY 586
Query: 177 LVEKCHRNRTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLED 236
++ K + K + LGR G+ + ++H HWK+ E V+I C D++ LE
Sbjct: 587 MLRKVGL-KMKSFLLLGRRGVFDGTVENMHLHWKYRELVKIICKEHNIKDVEYAARTLEA 645
Query: 237 KTFGKII----FRHGGTLVLYRGRNY 258
++ G ++ +++YRG+NY
Sbjct: 646 ESGGILVAVERVSKAHAIIIYRGKNY 671
>gi|242044486|ref|XP_002460114.1| hypothetical protein SORBIDRAFT_02g022940 [Sorghum bicolor]
gi|241923491|gb|EER96635.1| hypothetical protein SORBIDRAFT_02g022940 [Sorghum bicolor]
Length = 962
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 49/75 (65%)
Query: 185 RTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIF 244
R K +I +G G+T +++ IH WK E V+++ G P+++MK LED+T G +I+
Sbjct: 367 RMKERIKVGPGGVTQDIVESIHRKWKVDEVVKMRFEGPPSLNMKRTHDLLEDRTGGVVIW 426
Query: 245 RHGGTLVLYRGRNYN 259
R G ++VLYRG NYN
Sbjct: 427 RSGRSVVLYRGMNYN 441
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 7/81 (8%)
Query: 190 INLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKII----FR 245
+ LGR + + ++H HWKH E V+I G +K++ LE ++ G +I
Sbjct: 783 LMLGRREVFDGTVQNMHLHWKHRELVKIIVRGKSFAQVKHIAISLEAESEGVLISLDKTS 842
Query: 246 HGGTLVLYRGRNYNPKKRPVI 266
G ++ YRG+NY +RP I
Sbjct: 843 KGYAIIFYRGKNY---RRPQI 860
>gi|297602873|ref|NP_001053020.2| Os04g0464800 [Oryza sativa Japonica Group]
gi|255675534|dbj|BAF14934.2| Os04g0464800 [Oryza sativa Japonica Group]
Length = 1042
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 49/74 (66%)
Query: 185 RTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIF 244
R + ++ +G+ G+T ++N IH W++AE V+I+C V ++MK LE KT G +I+
Sbjct: 155 RLRNRLKVGKAGVTEGIVNGIHERWRNAELVKIRCDDVSAMNMKRTHEILERKTGGLVIW 214
Query: 245 RHGGTLVLYRGRNY 258
R G T++LYRG +Y
Sbjct: 215 RSGSTIILYRGTDY 228
Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 48/206 (23%), Positives = 85/206 (41%), Gaps = 24/206 (11%)
Query: 59 NPTL-NPNKNFKKKSKPQYRPPSSLDAPKKKYTDLPFDFRYSYTETNQNVRPIGL-REPK 116
N T+ NP NF K S PQ + K TD+ D Y + +++ + R
Sbjct: 484 NSTISNPKLNFDK-STPQN------SSKLKMATDVSLDGHECYEKKHKDETAVSDNRAES 536
Query: 117 YSPFGPGRLEREWTGVCAPAADPKVKSAEEGAEDPNLEEKRILVRERIQGEPLTNAERKA 176
+ F R + K+ E + +P+ E R ++ E E +
Sbjct: 537 LNVFAQNVEARLSQAIAEKEKTEKLIEELEMSSEPSRAETREVISE----------EERY 586
Query: 177 LVEKCHRNRTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLED 236
++ K + K + LGR G+ + ++H HWK+ E V+I C D++ LE
Sbjct: 587 MLRKVGL-KMKSFLLLGRRGVFDGTVENMHLHWKYRELVKIICKEHNIKDVEYAARTLEA 645
Query: 237 KTFGKII----FRHGGTLVLYRGRNY 258
++ G ++ +++YRG+NY
Sbjct: 646 ESGGILVAVERVSKAHAIIIYRGKNY 671
>gi|357167767|ref|XP_003581323.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Brachypodium distachyon]
Length = 1053
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 49/74 (66%)
Query: 185 RTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIF 244
R ++++ +G+ G+T ++N IH W++ E V+I+C V ++M+ LE KT G +I+
Sbjct: 154 RLRKRLKVGKPGVTEGIVNGIHERWRNVELVKIRCDDVSAMNMRRTHEILERKTGGLVIW 213
Query: 245 RHGGTLVLYRGRNY 258
R G T++LYRG NY
Sbjct: 214 RSGSTIILYRGTNY 227
Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 4/72 (5%)
Query: 192 LGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKII----FRHG 247
LGR G+ + ++H HWK+ E V+I C D++ LE ++ G ++ G
Sbjct: 657 LGRRGVFDGTIENMHLHWKYRELVKIICKEHSMKDVEYAARTLESQSGGILVAVERVSKG 716
Query: 248 GTLVLYRGRNYN 259
+++YRG+NY+
Sbjct: 717 HAIIMYRGKNYH 728
>gi|449459492|ref|XP_004147480.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Cucumis sativus]
Length = 1032
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 49/74 (66%)
Query: 185 RTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIF 244
R K+++N+G+ G+T ++N IH +W+ +E V+I C + ++MK LE KT G +++
Sbjct: 178 RLKKKLNVGKAGITEGIVNTIHEYWRRSEVVKIACEDLCRLNMKRTHDLLERKTGGIVVW 237
Query: 245 RHGGTLVLYRGRNY 258
R G ++LYRG NY
Sbjct: 238 RSGSKIILYRGPNY 251
Score = 42.4 bits (98), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 57/116 (49%), Gaps = 9/116 (7%)
Query: 153 LEEKRILVRERIQGEPLTNAERKALVEKCHRNRTKRQINLGRDGLTHNMLNDIHNHWKHA 212
LEE+ L + I E +T ER L K R K + LGR G+ + ++H HWK+
Sbjct: 564 LEEEEKLQQPEIDKEGITVEERYML--KKVGLRMKPFLLLGRRGVFDGTVENMHLHWKYR 621
Query: 213 EAVRIKCLGVPTVDMKNVCFQLEDKTFGKII----FRHGGTLVLYRGRNYNPKKRP 264
E V+I + +V LE ++ G ++ + ++++RG+NY KRP
Sbjct: 622 ELVKIITNERSFKTVHDVARTLEAESGGILVAVERVKRSFAIIIFRGKNY---KRP 674
>gi|414885161|tpg|DAA61175.1| TPA: hypothetical protein ZEAMMB73_652631 [Zea mays]
Length = 964
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 49/75 (65%)
Query: 185 RTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIF 244
R K +I +G G+T +++ IH WK E V+++ G P+++MK LED+T G +I+
Sbjct: 371 RMKERIKVGPGGVTQDIVESIHRKWKVDEVVKMRFEGPPSLNMKRTHDLLEDRTGGVVIW 430
Query: 245 RHGGTLVLYRGRNYN 259
R G ++VLYRG NYN
Sbjct: 431 RSGRSVVLYRGMNYN 445
Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 7/81 (8%)
Query: 190 INLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKII----FR 245
+ LGR + + ++H HWKH E V+I G K++ LE ++ G +I
Sbjct: 787 LMLGRREVFDGTVQNMHLHWKHRELVKIVVRGKSFAQAKHIAISLEAESEGVLISLDKTT 846
Query: 246 HGGTLVLYRGRNYNPKKRPVI 266
G ++ YRG+NY +RP I
Sbjct: 847 KGYVIIFYRGKNY---RRPQI 864
>gi|356527819|ref|XP_003532504.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Glycine max]
Length = 719
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/140 (34%), Positives = 73/140 (52%), Gaps = 8/140 (5%)
Query: 125 LEREWTGVCAPAADPKVKSAEEGAEDPNLEEKRILVRERIQGEPLTNAERKALVEKCHRN 184
L REW A P K EE AE+P ++K +L ++ + L AE+ + E+ R
Sbjct: 96 LRREWLR-PDQALFPWDKGQEEDAEEPGEQQKEMLKKKNVNASTL--AEQTLVEEELRRL 152
Query: 185 RT-----KRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTF 239
RT K +I + + GLT +L+ IH HW + E VR+K +MK +E +T
Sbjct: 153 RTLGMSLKEKITIPKAGLTRAVLDRIHRHWSNCELVRLKFHEFLAQNMKLAHQIVEHRTR 212
Query: 240 GKIIFRHGGTLVLYRGRNYN 259
G +I+R G + +YRG+NY
Sbjct: 213 GLVIWRSGSYMWVYRGKNYQ 232
Score = 38.9 bits (89), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 76/156 (48%), Gaps = 18/156 (11%)
Query: 167 EPLTNAERKALVEKCHRNRTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVD 226
E +T+ ER ++ + R K + LG G+ ++ ++H HWKH E V++
Sbjct: 520 ETITDEER--VMFRSVGLRMKAYLPLGIRGVFDGVIENMHLHWKHRELVKLITKQKTLAF 577
Query: 227 MKNVCFQLEDKTFGKII----FRHGGTLVLYRGRNYNPKKRPVI--PLMLWRPHEPVYPK 280
+++ LE ++ G ++ G +L+ YRG+NY +RP+ P L + +
Sbjct: 578 VEDTARLLEYESGGILVAIDKVPKGFSLIYYRGKNY---RRPMTLRPRNLLTKAKALQRS 634
Query: 281 LIKTTIEGLSI------EETKEMRKR-GLAVPVLTK 309
++ E LS E+ +EM+K+ GL+ + TK
Sbjct: 635 VVMQRHEALSQHVTELGEKIEEMKKKLGLSQDLGTK 670
>gi|449515235|ref|XP_004164655.1| PREDICTED: LOW QUALITY PROTEIN: chloroplastic group IIA intron
splicing facilitator CRS1, chloroplastic-like [Cucumis
sativus]
Length = 1053
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 48/74 (64%)
Query: 185 RTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIF 244
R K+++N+G+ G+T ++N IH W+ +E V+I C + ++MK LE KT G +++
Sbjct: 198 RLKKKLNVGKAGITEGIVNTIHEFWRRSEVVKIACEDLCRLNMKRTHDLLERKTGGIVVW 257
Query: 245 RHGGTLVLYRGRNY 258
R G ++LYRG NY
Sbjct: 258 RSGSKIILYRGPNY 271
Score = 42.4 bits (98), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 57/116 (49%), Gaps = 9/116 (7%)
Query: 153 LEEKRILVRERIQGEPLTNAERKALVEKCHRNRTKRQINLGRDGLTHNMLNDIHNHWKHA 212
LEE+ L + I E +T ER L K R K + LGR G+ + ++H HWK+
Sbjct: 585 LEEEEKLQQPEIDKEGITVEERYML--KKVGLRMKPFLLLGRRGVFDGTVENMHLHWKYR 642
Query: 213 EAVRIKCLGVPTVDMKNVCFQLEDKTFGKII----FRHGGTLVLYRGRNYNPKKRP 264
E V+I + +V LE ++ G ++ + ++++RG+NY KRP
Sbjct: 643 ELVKIITNERSFKTVHDVARTLEAESGGILVAVERVKRSFAIIIFRGKNY---KRP 695
>gi|302761182|ref|XP_002964013.1| hypothetical protein SELMODRAFT_20706 [Selaginella moellendorffii]
gi|300167742|gb|EFJ34346.1| hypothetical protein SELMODRAFT_20706 [Selaginella moellendorffii]
Length = 555
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 56/94 (59%), Gaps = 9/94 (9%)
Query: 186 TKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIFR 245
TK +I + + G+T N++ IH W+ +E V++KC ++M+ V +LE +T G +I+R
Sbjct: 49 TKERIKVKKLGITRNVVQAIHQKWRTSEIVKLKCDQEVAMNMRKVHEELEKRTGGLVIWR 108
Query: 246 HGGTLVLYRGRNYN--PKKRPVIPLMLWRPHEPV 277
G LV+YRG++Y PK+R W P E V
Sbjct: 109 AGAALVIYRGKDYAGPPKER-------WIPTESV 135
Score = 43.9 bits (102), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 38/70 (54%), Gaps = 4/70 (5%)
Query: 193 GRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKII----FRHGG 248
GR G+ ++ ++H HWK+ E V++ G +D+++ +E ++ G +I G
Sbjct: 458 GRRGVYSGIIENMHLHWKYRELVKVVYKGKDRMDIEDTAKMIECESGGILIGIYPVSKGQ 517
Query: 249 TLVLYRGRNY 258
+ YRG+NY
Sbjct: 518 VFLYYRGKNY 527
>gi|225452572|ref|XP_002275511.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Vitis vinifera]
Length = 1044
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 48/74 (64%)
Query: 185 RTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIF 244
+ ++++ +G+ G+T ++N IH W+ AE V+I+C + ++MK LE KT G +I+
Sbjct: 200 QIRKKLKVGKAGITEGIVNGIHERWRRAEVVKIRCEDICKLNMKRTHDILERKTGGLVIW 259
Query: 245 RHGGTLVLYRGRNY 258
R G ++LYRG NY
Sbjct: 260 RSGSYIILYRGANY 273
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 58/117 (49%), Gaps = 9/117 (7%)
Query: 153 LEEKRILVRERIQGEPLTNAERKALVEKCHRNRTKRQINLGRDGLTHNMLNDIHNHWKHA 212
LEE +I + I E +T ER L + R K + LGR G+ + ++H HWK+
Sbjct: 590 LEEAQIPQQPEIDKEGITEEERYMLRKVGLR--MKPFLLLGRRGIFDGTVENMHLHWKYR 647
Query: 213 EAVRIKCLGVPTVDMKNVCFQLEDKTFGKII----FRHGGTLVLYRGRNYNPKKRPV 265
E V+I G D+ V LE ++ G ++ G +++YRG+NY KRP
Sbjct: 648 ELVKIISNGRSIEDIHGVARTLEAESGGILVAVERVSKGYAIIMYRGKNY---KRPA 701
>gi|296087726|emb|CBI34982.3| unnamed protein product [Vitis vinifera]
Length = 1028
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 48/74 (64%)
Query: 185 RTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIF 244
+ ++++ +G+ G+T ++N IH W+ AE V+I+C + ++MK LE KT G +I+
Sbjct: 200 QIRKKLKVGKAGITEGIVNGIHERWRRAEVVKIRCEDICKLNMKRTHDILERKTGGLVIW 259
Query: 245 RHGGTLVLYRGRNY 258
R G ++LYRG NY
Sbjct: 260 RSGSYIILYRGANY 273
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 58/117 (49%), Gaps = 9/117 (7%)
Query: 153 LEEKRILVRERIQGEPLTNAERKALVEKCHRNRTKRQINLGRDGLTHNMLNDIHNHWKHA 212
LEE +I + I E +T ER L + R K + LGR G+ + ++H HWK+
Sbjct: 590 LEEAQIPQQPEIDKEGITEEERYMLRKVGLR--MKPFLLLGRRGIFDGTVENMHLHWKYR 647
Query: 213 EAVRIKCLGVPTVDMKNVCFQLEDKTFGKII----FRHGGTLVLYRGRNYNPKKRPV 265
E V+I G D+ V LE ++ G ++ G +++YRG+NY KRP
Sbjct: 648 ELVKIISNGRSIEDIHGVARTLEAESGGILVAVERVSKGYAIIMYRGKNY---KRPA 701
>gi|147852955|emb|CAN81271.1| hypothetical protein VITISV_006146 [Vitis vinifera]
Length = 1399
Score = 67.8 bits (164), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 48/74 (64%)
Query: 185 RTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIF 244
+ ++++ +G+ G+T ++N IH W+ AE V+I+C + ++MK LE KT G +I+
Sbjct: 392 QIRKKLKVGKAGITEGIVNGIHERWRRAEVVKIRCEDICKLNMKRTHDILERKTGGLVIW 451
Query: 245 RHGGTLVLYRGRNY 258
R G ++LYRG NY
Sbjct: 452 RSGSYIILYRGANY 465
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 58/117 (49%), Gaps = 9/117 (7%)
Query: 153 LEEKRILVRERIQGEPLTNAERKALVEKCHRNRTKRQINLGRDGLTHNMLNDIHNHWKHA 212
LEE +I + I E +T ER L + R K + LGR G+ + ++H HWK+
Sbjct: 965 LEEAQIPQQPEIDKEGITEEERYMLRKVGLR--MKPFLLLGRRGIFDGTVENMHLHWKYR 1022
Query: 213 EAVRIKCLGVPTVDMKNVCFQLEDKTFGKII----FRHGGTLVLYRGRNYNPKKRPV 265
E V+I G D+ V LE ++ G ++ G +++YRG+NY KRP
Sbjct: 1023 ELVKIISNGRSIEDIHGVARTLEAESGGILVAVERVSKGYAIIMYRGKNY---KRPA 1076
>gi|302768979|ref|XP_002967909.1| hypothetical protein SELMODRAFT_61058 [Selaginella moellendorffii]
gi|300164647|gb|EFJ31256.1| hypothetical protein SELMODRAFT_61058 [Selaginella moellendorffii]
Length = 557
Score = 67.8 bits (164), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 56/94 (59%), Gaps = 9/94 (9%)
Query: 186 TKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIFR 245
TK +I + + G+T N++ IH W+ +E V++KC ++M+ V +LE +T G +I+R
Sbjct: 48 TKERIKVKKLGITRNVVQAIHQKWRTSEIVKLKCDQEVAMNMRKVHEELEKRTGGLVIWR 107
Query: 246 HGGTLVLYRGRNYN--PKKRPVIPLMLWRPHEPV 277
G LV+YRG++Y PK+R W P E V
Sbjct: 108 AGTALVIYRGKDYAGPPKER-------WIPTESV 134
Score = 45.4 bits (106), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 39/71 (54%), Gaps = 4/71 (5%)
Query: 192 LGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKII----FRHG 247
LGR G+ ++ ++H HWK+ E V++ G +D+++ +E ++ G +I G
Sbjct: 459 LGRRGVYSGIIENMHLHWKYRELVKVVYKGKDRMDIEDTAKMIECESGGILIGIYPVSKG 518
Query: 248 GTLVLYRGRNY 258
+ YRG+NY
Sbjct: 519 QVFLYYRGKNY 529
>gi|224111046|ref|XP_002315729.1| predicted protein [Populus trichocarpa]
gi|222864769|gb|EEF01900.1| predicted protein [Populus trichocarpa]
Length = 894
Score = 67.8 bits (164), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 47/73 (64%)
Query: 186 TKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIFR 245
TK + +G G+T +++ IH+ WK +E R+K G P ++MK + LE+KT G +I+R
Sbjct: 227 TKSKTRVGGRGVTQEVVDAIHDKWKTSEIARVKVEGAPALNMKRMHEILENKTGGLVIWR 286
Query: 246 HGGTLVLYRGRNY 258
G T+ LYRG +Y
Sbjct: 287 SGATVSLYRGVSY 299
Score = 44.7 bits (104), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 40/79 (50%), Gaps = 4/79 (5%)
Query: 185 RTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKII- 243
R K + LGR G+ + ++H HWK+ E V+I +K + LE ++ G ++
Sbjct: 648 RMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIILKAKSFEQVKKIALALEAESGGVLVS 707
Query: 244 ---FRHGGTLVLYRGRNYN 259
G +++YRG++Y
Sbjct: 708 VDKISKGYAIIVYRGKDYQ 726
>gi|302805129|ref|XP_002984316.1| hypothetical protein SELMODRAFT_120007 [Selaginella moellendorffii]
gi|300148165|gb|EFJ14826.1| hypothetical protein SELMODRAFT_120007 [Selaginella moellendorffii]
Length = 692
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 43/69 (62%)
Query: 190 INLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIFRHGGT 249
I +G G+T ++ DIH W+ E V+I+C G ++MK +LE KT G +++R GG
Sbjct: 99 IKVGYLGVTKAVVQDIHRRWQKCEVVKIQCDGPAAINMKQTHDELETKTGGLVVWRTGGM 158
Query: 250 LVLYRGRNY 258
+LYRG+ Y
Sbjct: 159 AILYRGKGY 167
Score = 40.8 bits (94), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
Query: 192 LGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKT----FGKIIFRHG 247
+GR G+ ++ ++H HWKH E V++ V LE ++ G + G
Sbjct: 508 IGRRGVFDGVIENMHLHWKHRELVKLILKEKDKAIALEVAKMLEIESGGILVGVVTTSKG 567
Query: 248 GTLVLYRGRNYN 259
+++YRG+NY
Sbjct: 568 QAIIVYRGKNYQ 579
>gi|357158137|ref|XP_003578028.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Brachypodium distachyon]
Length = 962
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 48/75 (64%)
Query: 185 RTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIF 244
R K ++ +G G+T ++ IH+ W E V+++ G P+++MK LED+T G +I+
Sbjct: 369 RMKERMRIGPGGVTQAIVKSIHSKWSVDEVVKMRFEGPPSLNMKRTHEILEDRTGGTVIW 428
Query: 245 RHGGTLVLYRGRNYN 259
R G ++VLYRG NYN
Sbjct: 429 RSGRSIVLYRGMNYN 443
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 43/79 (54%), Gaps = 7/79 (8%)
Query: 192 LGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKII----FRHG 247
LGR + + ++H HWKH E V+I G +K++ LE ++ G +I G
Sbjct: 787 LGRREVFAGTVQNMHLHWKHRELVKIIVKGKSFAQVKHIAISLEAESGGVLISLDKTTKG 846
Query: 248 GTLVLYRGRNYNPKKRPVI 266
++++YRG+NY KRP I
Sbjct: 847 YSIIVYRGKNY---KRPQI 862
>gi|255552728|ref|XP_002517407.1| conserved hypothetical protein [Ricinus communis]
gi|223543418|gb|EEF44949.1| conserved hypothetical protein [Ricinus communis]
Length = 1009
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 46/72 (63%)
Query: 187 KRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIFRH 246
KR++ +G+ G+T ++N IH W+ +E V+I C + ++MK LE KT G +++R
Sbjct: 174 KRKLKVGKAGITEGIVNGIHERWRRSEVVKIVCEDLCRMNMKRTHDLLERKTGGLVVWRA 233
Query: 247 GGTLVLYRGRNY 258
G +VLYRG NY
Sbjct: 234 GSKIVLYRGVNY 245
Score = 44.3 bits (103), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 41/79 (51%), Gaps = 7/79 (8%)
Query: 192 LGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKII----FRHG 247
+GR G+ + ++H HWK+ E V+I C + V LE ++ G ++ G
Sbjct: 600 IGRRGVFDGTIENMHLHWKYRELVKIICKERSLNAVHEVAQSLEAESGGILVAVERVSKG 659
Query: 248 GTLVLYRGRNYNPKKRPVI 266
+V+YRG+NY +RP +
Sbjct: 660 YAIVVYRGKNY---QRPAL 675
>gi|449432614|ref|XP_004134094.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Cucumis sativus]
gi|449504099|ref|XP_004162252.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Cucumis sativus]
Length = 874
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 59/101 (58%), Gaps = 1/101 (0%)
Query: 187 KRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIFRH 246
+ ++ +G G+T +++ IH WK +E VR+K LG P ++MK + LE KT G +I+R
Sbjct: 253 RHKMKIGGGGVTQAVVDVIHEKWKSSEIVRLKILGPPALNMKRMHEILERKTGGLVIWRS 312
Query: 247 GGTLVLYRGRNYNPKKRPVIPLMLWRPHE-PVYPKLIKTTI 286
G +L LYRG +Y + P +++ +E PK +TI
Sbjct: 313 GTSLSLYRGVSYELPEAPQFNKRIYKRNEITALPKTGASTI 353
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 53/106 (50%), Gaps = 7/106 (6%)
Query: 165 QGEPLTNAERKALVEKCHRNRTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPT 224
Q EP + E + + + R K + LGR + + ++H HWK+ E V+I
Sbjct: 651 QAEPDSITEEERFMFRKLGLRMKAFLLLGRREVFDGTVENMHLHWKYRELVKIMIKANSF 710
Query: 225 VDMKNVCFQLEDKTFGKII----FRHGGTLVLYRGRNYNPKKRPVI 266
+KN+ QLE ++ G ++ G +++YRG++Y KRP +
Sbjct: 711 DHVKNIALQLEAESGGVLVSIDKVSKGYAIIVYRGKDY---KRPSL 753
>gi|30678323|ref|NP_186786.2| CRM family member 2 [Arabidopsis thaliana]
gi|22531018|gb|AAM97013.1| unknown protein [Arabidopsis thaliana]
gi|37202002|gb|AAQ89616.1| At3g01370 [Arabidopsis thaliana]
gi|332640136|gb|AEE73657.1| CRM family member 2 [Arabidopsis thaliana]
Length = 1011
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 45/75 (60%)
Query: 185 RTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIF 244
R +++ +G+ G+T ++N IH W+ E V+I C + ++MK LE KT G +I+
Sbjct: 180 RLTKKLKIGKAGITEGIVNGIHERWRTTEVVKIFCEDISRMNMKRTHDVLETKTGGLVIW 239
Query: 245 RHGGTLVLYRGRNYN 259
R G ++LYRG NY
Sbjct: 240 RSGSKILLYRGVNYQ 254
Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 4/71 (5%)
Query: 192 LGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKII----FRHG 247
LGR G+ + ++H HWK+ E V+I C V LE ++ G ++ G
Sbjct: 600 LGRRGVFDGTIENMHLHWKYRELVKIICNEYSIEAAHKVAEILEAESGGILVAVEMVSKG 659
Query: 248 GTLVLYRGRNY 258
+++YRG+NY
Sbjct: 660 YAIIVYRGKNY 670
>gi|6692258|gb|AAF24608.1|AC010870_1 unknown protein [Arabidopsis thaliana]
Length = 1020
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 45/75 (60%)
Query: 185 RTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIF 244
R +++ +G+ G+T ++N IH W+ E V+I C + ++MK LE KT G +I+
Sbjct: 180 RLTKKLKIGKAGITEGIVNGIHERWRTTEVVKIFCEDISRMNMKRTHDVLETKTGGLVIW 239
Query: 245 RHGGTLVLYRGRNYN 259
R G ++LYRG NY
Sbjct: 240 RSGSKILLYRGVNYQ 254
Score = 43.5 bits (101), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 4/71 (5%)
Query: 192 LGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKII----FRHG 247
LGR G+ + ++H HWK+ E V+I C V LE ++ G ++ G
Sbjct: 609 LGRRGVFDGTIENMHLHWKYRELVKIICNEYSIEAAHKVAEILEAESGGILVAVEMVSKG 668
Query: 248 GTLVLYRGRNY 258
+++YRG+NY
Sbjct: 669 YAIIVYRGKNY 679
>gi|449529423|ref|XP_004171699.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like, partial [Cucumis sativus]
Length = 789
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 46/75 (61%)
Query: 185 RTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIF 244
R +I +G G+T +L+ IH WK E V++K G TV+MK +LE++T G +I+
Sbjct: 235 RMVERIEVGVKGITQELLDSIHEKWKVDEVVKLKFEGPLTVNMKRAHEKLENRTGGLVIW 294
Query: 245 RHGGTLVLYRGRNYN 259
R G +VLYRG Y+
Sbjct: 295 RSGSLIVLYRGMTYH 309
Score = 47.0 bits (110), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 4/71 (5%)
Query: 192 LGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKII----FRHG 247
LGR G+ + ++H HWK E V+I G +K+V LE ++ G +I G
Sbjct: 659 LGRRGVYDGTVENMHLHWKFRELVKIIVRGKTLQQVKHVAISLEAESNGVVISLDKTTKG 718
Query: 248 GTLVLYRGRNY 258
+++YRG+NY
Sbjct: 719 YEVIVYRGKNY 729
>gi|449452735|ref|XP_004144114.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Cucumis sativus]
Length = 846
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 46/75 (61%)
Query: 185 RTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIF 244
R +I +G G+T +L+ IH WK E V++K G TV+MK +LE++T G +I+
Sbjct: 292 RMVERIEVGVKGITQELLDSIHEKWKVDEVVKLKFEGPLTVNMKRAHEKLENRTGGLVIW 351
Query: 245 RHGGTLVLYRGRNYN 259
R G +VLYRG Y+
Sbjct: 352 RSGSLIVLYRGMTYH 366
Score = 46.6 bits (109), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 4/71 (5%)
Query: 192 LGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKII----FRHG 247
LGR G+ + ++H HWK E V+I G +K+V LE ++ G +I G
Sbjct: 716 LGRRGVYDGTVENMHLHWKFRELVKIIVRGKTLQQVKHVAISLEAESNGVVISLDKTTKG 775
Query: 248 GTLVLYRGRNY 258
+++YRG+NY
Sbjct: 776 YEVIVYRGKNY 786
>gi|224059986|ref|XP_002300024.1| predicted protein [Populus trichocarpa]
gi|222847282|gb|EEE84829.1| predicted protein [Populus trichocarpa]
Length = 1012
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 46/72 (63%)
Query: 187 KRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIFRH 246
KR++ +G+ G+T ++N IH W+ +E V+I C + ++MK LE KT G +++R
Sbjct: 178 KRKLKVGKAGITEGIVNGIHERWRRSEVVKIVCEDLCRMNMKRTHDLLERKTGGLVVWRV 237
Query: 247 GGTLVLYRGRNY 258
G +VLYRG +Y
Sbjct: 238 GSKIVLYRGADY 249
Score = 42.7 bits (99), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 4/72 (5%)
Query: 192 LGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKII----FRHG 247
+G G+ + ++H HWK+ E V+I C ++ V LE ++ G ++ G
Sbjct: 604 MGERGVFDGTIENMHLHWKYRELVKIICKEKSFQAVQAVARTLEAESGGILVAVEGVSKG 663
Query: 248 GTLVLYRGRNYN 259
++LYRG+NY
Sbjct: 664 YAIILYRGKNYT 675
>gi|225432918|ref|XP_002280226.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic [Vitis vinifera]
gi|297737163|emb|CBI26364.3| unnamed protein product [Vitis vinifera]
Length = 902
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 60/110 (54%)
Query: 149 EDPNLEEKRILVRERIQGEPLTNAERKALVEKCHRNRTKRQINLGRDGLTHNMLNDIHNH 208
E P +EE + ++ R LT E + + RTK + +G G+T +++ I
Sbjct: 198 ERPKVEEGSVRIKSRTSLAELTLPESELRRLRNLTMRTKNKTKIGGGGVTQAVVDMIREK 257
Query: 209 WKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIFRHGGTLVLYRGRNY 258
WK +E V++KC G ++M+ + LE KT G +I+R G ++ LYRG +Y
Sbjct: 258 WKTSEIVKLKCEGAAALNMRRIHEILERKTGGLVIWRSGTSVSLYRGVSY 307
Score = 41.6 bits (96), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 4/78 (5%)
Query: 185 RTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKII- 243
R K + LGR G+ + ++H HWK+ E V+I +K LE ++ G ++
Sbjct: 659 RMKAFLLLGRRGVFSGTVENMHLHWKYRELVKIIVKAKTFDQVKKTALALESESGGVLVS 718
Query: 244 ---FRHGGTLVLYRGRNY 258
G +V++RG++Y
Sbjct: 719 VDKVSKGFAIVVFRGKDY 736
>gi|357496109|ref|XP_003618343.1| Chloroplastic group IIA intron splicing facilitator CRS1 [Medicago
truncatula]
gi|355493358|gb|AES74561.1| Chloroplastic group IIA intron splicing facilitator CRS1 [Medicago
truncatula]
Length = 1096
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 47/74 (63%)
Query: 185 RTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIF 244
+ K++I +G+ G+T ++N IH W+ +E VR+ C + ++MK LE KT G +++
Sbjct: 165 QMKQKIKVGKAGVTEGIVNGIHERWRRSEVVRVVCEDLCRINMKRTHDILERKTGGLVVW 224
Query: 245 RHGGTLVLYRGRNY 258
R G ++LYRG +Y
Sbjct: 225 RSGSKIILYRGIDY 238
Score = 44.3 bits (103), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 53/112 (47%), Gaps = 6/112 (5%)
Query: 152 NLEEKRILVRERIQGEPLTNAERKALVEKCHRNRTKRQINLGRDGLTHNMLNDIHNHWKH 211
+LE+ L E I E +T ER L + + K + LGR G+ + ++H HWK+
Sbjct: 540 SLEKDESLQEEEIDKESITEEERYML--RRIGLKMKPFLLLGRRGVFDGTVENMHLHWKY 597
Query: 212 AEAVRIKCLGVPTVDMKNVCFQLEDKTFGKII----FRHGGTLVLYRGRNYN 259
E V+I C LE ++ G ++ G +++YRG+NY+
Sbjct: 598 RELVKIICNQESVEYAHQTARTLEAESGGILVAVERVNKGYAIIVYRGKNYS 649
>gi|147852748|emb|CAN79523.1| hypothetical protein VITISV_010525 [Vitis vinifera]
Length = 902
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 60/110 (54%)
Query: 149 EDPNLEEKRILVRERIQGEPLTNAERKALVEKCHRNRTKRQINLGRDGLTHNMLNDIHNH 208
E P +EE + ++ R LT E + + RTK + +G G+T +++ I
Sbjct: 198 ERPKVEEGSVRIKSRTSLAELTLPESELRRLRNLTMRTKNKTKIGGGGVTQAVVDMIREK 257
Query: 209 WKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIFRHGGTLVLYRGRNY 258
WK +E V++KC G ++M+ + LE KT G +I+R G ++ LYRG +Y
Sbjct: 258 WKTSEIVKLKCEGAAALNMRRIHEILERKTGGLVIWRSGTSVSLYRGVSY 307
Score = 41.6 bits (96), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 4/79 (5%)
Query: 185 RTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKII- 243
R K + LGR G+ + ++H HWK+ E V+I +K LE ++ G ++
Sbjct: 659 RMKAFLLLGRRGVFSGTVENMHLHWKYRELVKIIVKAKTFDQVKKTALALESESGGVLVS 718
Query: 244 ---FRHGGTLVLYRGRNYN 259
G +V++RG++Y
Sbjct: 719 VDKVSKGFAIVVFRGKDYQ 737
>gi|125549065|gb|EAY94887.1| hypothetical protein OsI_16687 [Oryza sativa Indica Group]
Length = 893
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 48/75 (64%)
Query: 185 RTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIF 244
R K ++ +G G+T ++ IH W+ E V+++ G P+++MK LE++T G +I+
Sbjct: 354 RMKERMRVGPGGVTQLIVESIHQKWRVEEVVKLRFEGPPSLNMKRTHDILEERTGGIVIW 413
Query: 245 RHGGTLVLYRGRNYN 259
R G ++VLYRG NYN
Sbjct: 414 RSGRSVVLYRGMNYN 428
Score = 47.0 bits (110), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 4/73 (5%)
Query: 190 INLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKII----FR 245
+ LGR + + ++H HWKH E V++ G +K++ LE ++ G +I
Sbjct: 715 LMLGRREVFDGTVQNMHLHWKHRELVKVLVKGKSFPQVKHIAISLEAESGGVLISVDKTT 774
Query: 246 HGGTLVLYRGRNY 258
G ++LYRG+NY
Sbjct: 775 KGYAIILYRGKNY 787
>gi|115478793|ref|NP_001062990.1| Os09g0363100 [Oryza sativa Japonica Group]
gi|48716728|dbj|BAD23409.1| putative CRS1 [Oryza sativa Japonica Group]
gi|50726191|dbj|BAD33710.1| putative CRS1 [Oryza sativa Japonica Group]
gi|113631223|dbj|BAF24904.1| Os09g0363100 [Oryza sativa Japonica Group]
gi|125591023|gb|EAZ31373.1| hypothetical protein OsJ_15500 [Oryza sativa Japonica Group]
Length = 947
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 48/75 (64%)
Query: 185 RTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIF 244
R K ++ +G G+T ++ IH W+ E V+++ G P+++MK LE++T G +I+
Sbjct: 355 RMKERMRVGPGGVTQLIVESIHQKWRVEEVVKLRFEGPPSLNMKRTHDILEERTGGIVIW 414
Query: 245 RHGGTLVLYRGRNYN 259
R G ++VLYRG NYN
Sbjct: 415 RSGRSVVLYRGMNYN 429
Score = 47.0 bits (110), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 4/73 (5%)
Query: 190 INLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKII----FR 245
+ LGR + + ++H HWKH E V++ G +K++ LE ++ G +I
Sbjct: 770 LMLGRREVFDGTVQNMHLHWKHRELVKVLVKGKSFPQVKHIAISLEAESGGVLISVDKTT 829
Query: 246 HGGTLVLYRGRNY 258
G ++LYRG+NY
Sbjct: 830 KGYAIILYRGKNY 842
>gi|356576487|ref|XP_003556362.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Glycine max]
Length = 835
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/147 (33%), Positives = 71/147 (48%), Gaps = 20/147 (13%)
Query: 118 SPFGPGRLEREWTGVCAPAADPKVKSAEEGAEDPNLEEKRILVRERIQGEPLT--NAERK 175
SP G G + V P P V+ EE K + R + LT +E K
Sbjct: 166 SPLGFGSFGSDDREVRFPWEKPVVEELEE--------RKSMRSRSKTSLAELTLPESELK 217
Query: 176 ALV----EKCHRNRTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVC 231
L+ EK H+ R +GR G+T +++ IH WK +E VR+K G ++MK +
Sbjct: 218 RLLKLTFEKKHKTR------IGRSGVTQAVVDKIHERWKTSEIVRLKFEGEAALNMKRMH 271
Query: 232 FQLEDKTFGKIIFRHGGTLVLYRGRNY 258
LE KT G +I+R G ++ LYRG +Y
Sbjct: 272 EILERKTGGLVIWRSGNSVSLYRGVSY 298
Score = 44.7 bits (104), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 41/79 (51%), Gaps = 4/79 (5%)
Query: 185 RTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKII- 243
R K + LGR G+ + ++H HWK+ E V+I +K + LE ++ G ++
Sbjct: 644 RMKAFLLLGRRGVFDGTIENMHLHWKYRELVKIIVKAKTFEQVKKIALALEAESGGVLVS 703
Query: 244 ---FRHGGTLVLYRGRNYN 259
G ++++YRG++Y
Sbjct: 704 VDKVSKGYSVIVYRGKDYQ 722
>gi|356573410|ref|XP_003554854.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Glycine max]
Length = 1028
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 45/73 (61%)
Query: 186 TKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIFR 245
TK+++ L + G+T +++ IH WK +E VR+ C + DM+ LE KT G +++R
Sbjct: 164 TKKKVRLAKAGITEQIVDVIHERWKRSEVVRVFCEELSRDDMRRTHDLLERKTGGLVVWR 223
Query: 246 HGGTLVLYRGRNY 258
G ++LYRG +Y
Sbjct: 224 SGTKIILYRGADY 236
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 41/72 (56%), Gaps = 5/72 (6%)
Query: 192 LGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKII----FRHG 247
LGR G+ + ++H HWK+ E V+I C G ++ + LE ++ G ++ R G
Sbjct: 584 LGRRGVFDGTVENMHLHWKYRELVKIICNG-SLEEVHQIALTLEAESGGILVAVERVRKG 642
Query: 248 GTLVLYRGRNYN 259
+++YRG+NY+
Sbjct: 643 FAIIVYRGKNYS 654
>gi|356573408|ref|XP_003554853.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Glycine max]
Length = 1027
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 50/90 (55%), Gaps = 2/90 (2%)
Query: 169 LTNAERKALVEKCHRNRTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMK 228
L++AE + L R K + +G+ GLT ++N IH W+ E VRI C + +MK
Sbjct: 130 LSDAEIRRLTTAGLAMRQK--LRVGKAGLTEGIVNGIHERWRSFEVVRIVCEDLSRFNMK 187
Query: 229 NVCFQLEDKTFGKIIFRHGGTLVLYRGRNY 258
LE KT G +++R G ++LYRG +Y
Sbjct: 188 RTHDLLERKTGGLVVWRSGSKIILYRGTDY 217
Score = 42.7 bits (99), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 41/73 (56%), Gaps = 5/73 (6%)
Query: 192 LGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTV-DMKNVCFQLEDKTFGKII----FRH 246
LGR G+ + ++H HWK+ E V+I C ++ D++ + LE ++ G +I
Sbjct: 564 LGRRGVFDGTVENMHLHWKYRELVKIICNKQMSLEDVQQIAQTLEAESGGILIAVERVNK 623
Query: 247 GGTLVLYRGRNYN 259
+++YRG+NY+
Sbjct: 624 SYAIIVYRGKNYS 636
>gi|255551945|ref|XP_002517017.1| conserved hypothetical protein [Ricinus communis]
gi|223543652|gb|EEF45180.1| conserved hypothetical protein [Ricinus communis]
Length = 773
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 47/75 (62%)
Query: 185 RTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIF 244
+ K ++ + G+T +++ IH+ WK +E VR+K G P ++M+ + LE KT G +I+
Sbjct: 119 QIKSKVRVKGAGVTQEVVDSIHDRWKTSEIVRVKVEGAPALNMRRMHEILERKTGGLVIW 178
Query: 245 RHGGTLVLYRGRNYN 259
R G ++ LYRG +Y
Sbjct: 179 RSGTSVSLYRGVSYE 193
Score = 42.4 bits (98), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 43/86 (50%), Gaps = 6/86 (6%)
Query: 185 RTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKII- 243
R K + LGR G+ + ++H HWK+ E V+I +K + LE ++ G ++
Sbjct: 540 RMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIILKAKNIEQVKKIALALEAESGGILVS 599
Query: 244 ---FRHGGTLVLYRGRNYN--PKKRP 264
G ++++RG++Y K RP
Sbjct: 600 VDRVSKGYAIIVFRGKDYQRPSKLRP 625
>gi|222616258|gb|EEE52390.1| hypothetical protein OsJ_34482 [Oryza sativa Japonica Group]
Length = 560
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 45/75 (60%)
Query: 185 RTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIF 244
R K +I +G G+T ++ I + W++ E VRIK G P ++M+ LE KT G +I+
Sbjct: 36 RLKSRIKVGGAGVTREIVERIRDRWRNDEVVRIKVTGTPALNMRLFHEILERKTGGLVIW 95
Query: 245 RHGGTLVLYRGRNYN 259
R G ++ LYRG Y+
Sbjct: 96 RSGTSVSLYRGVAYD 110
Score = 46.6 bits (109), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 41/78 (52%), Gaps = 4/78 (5%)
Query: 185 RTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKII- 243
R K + LGR G+ + ++H HWK+ E V+I D+K + LE ++ G ++
Sbjct: 452 RMKAFLLLGRRGVFDGTIENMHLHWKYRELVKILVKAKSFGDVKKIALSLEAESGGILVS 511
Query: 244 ---FRHGGTLVLYRGRNY 258
G +V++RG++Y
Sbjct: 512 VDKVSKGYAIVVFRGKDY 529
>gi|77551737|gb|ABA94534.1| CRS1/YhbY domain containing protein, expressed [Oryza sativa
Japonica Group]
Length = 886
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 45/75 (60%)
Query: 185 RTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIF 244
R K +I +G G+T ++ I + W++ E VRIK G P ++M+ LE KT G +I+
Sbjct: 190 RLKSRIKVGGAGVTREIVERIRDRWRNDEVVRIKVTGTPALNMRLFHEILERKTGGLVIW 249
Query: 245 RHGGTLVLYRGRNYN 259
R G ++ LYRG Y+
Sbjct: 250 RSGTSVSLYRGVAYD 264
Score = 46.6 bits (109), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 41/78 (52%), Gaps = 4/78 (5%)
Query: 185 RTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKII- 243
R K + LGR G+ + ++H HWK+ E V+I D+K + LE ++ G ++
Sbjct: 606 RMKAFLLLGRRGVFDGTIENMHLHWKYRELVKILVKAKSFGDVKKIALSLEAESGGILVS 665
Query: 244 ---FRHGGTLVLYRGRNY 258
G +V++RG++Y
Sbjct: 666 VDKVSKGYAIVVFRGKDY 683
>gi|242071513|ref|XP_002451033.1| hypothetical protein SORBIDRAFT_05g022980 [Sorghum bicolor]
gi|241936876|gb|EES10021.1| hypothetical protein SORBIDRAFT_05g022980 [Sorghum bicolor]
Length = 895
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 43/75 (57%)
Query: 185 RTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIF 244
R K + +G G+T ++ I WK E VR+K G P ++M+ LE KT G +I+
Sbjct: 188 RIKSRTKVGGAGVTREIVEKIKEKWKTEEVVRVKVSGTPALNMRLFHEILERKTGGLVIW 247
Query: 245 RHGGTLVLYRGRNYN 259
R G ++ LYRG +Y+
Sbjct: 248 RSGTSVSLYRGVDYD 262
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 41/78 (52%), Gaps = 4/78 (5%)
Query: 185 RTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKII- 243
R K + LGR G+ + ++H HWK+ E V+I D+K + LE ++ G ++
Sbjct: 603 RMKAFLLLGRRGVFDGTIENMHLHWKYRELVKILVKAKSFADVKRIALSLEAESGGILVS 662
Query: 244 ---FRHGGTLVLYRGRNY 258
G +V++RG+NY
Sbjct: 663 VDKVSKGYAIVVFRGKNY 680
>gi|357156286|ref|XP_003577404.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Brachypodium distachyon]
Length = 881
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 43/75 (57%)
Query: 185 RTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIF 244
R K +I +G G+T ++ I WK E VR+K G P ++M+ LE KT G +I+
Sbjct: 184 RIKSRIQVGGAGVTREIVAKIKEKWKTDEVVRVKVSGTPALNMRLFHEILERKTGGLVIW 243
Query: 245 RHGGTLVLYRGRNYN 259
R G ++ LYRG Y+
Sbjct: 244 RSGTSVSLYRGVAYD 258
Score = 44.7 bits (104), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 58/126 (46%), Gaps = 21/126 (16%)
Query: 152 NLEEKRILVRERIQG---------------EPLTNAERKALVEKCHRNRTKRQINLGRDG 196
+L EKRI ER+ G E +T ER + + R K + LGR G
Sbjct: 554 SLAEKRIAKAERVLGKVETALKPSEDTNPHETITEEER--FMFRKLGLRMKAFLLLGRRG 611
Query: 197 LTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKII----FRHGGTLVL 252
+ + ++H HWK+ E V+I ++K + LE ++ G ++ G +V+
Sbjct: 612 VFDGTIENMHLHWKYRELVKILVKVKSFTEVKRIALSLEVESGGILVSVDKVSKGYAIVV 671
Query: 253 YRGRNY 258
+RG++Y
Sbjct: 672 FRGKDY 677
>gi|162459980|ref|NP_001106061.1| CRM family member 3 [Zea mays]
gi|156789080|gb|ABU96081.1| CRM family member 3 [Zea mays]
Length = 842
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 43/75 (57%)
Query: 185 RTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIF 244
R K + +G G+T ++ I WK E VR+K G P ++M+ LE KT G +I+
Sbjct: 183 RIKSRTKVGGAGVTREIVEKIKEKWKTEEVVRVKVSGTPALNMRLFHEILERKTGGLVIW 242
Query: 245 RHGGTLVLYRGRNYN 259
R G ++ LYRG +Y+
Sbjct: 243 RSGTSVSLYRGVDYD 257
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 41/78 (52%), Gaps = 4/78 (5%)
Query: 185 RTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKII- 243
R K + LGR G+ + ++H HWK+ E V+I D+K + LE ++ G ++
Sbjct: 598 RMKAFLLLGRRGVFDGTIENMHLHWKYRELVKILVKAKSFADVKRIALSLEAESGGILVS 657
Query: 244 ---FRHGGTLVLYRGRNY 258
G +V++RG+NY
Sbjct: 658 VDKVSKGYAIVVFRGKNY 675
>gi|357441009|ref|XP_003590782.1| Chloroplastic group IIA intron splicing facilitator CRS1 [Medicago
truncatula]
gi|355479830|gb|AES61033.1| Chloroplastic group IIA intron splicing facilitator CRS1 [Medicago
truncatula]
Length = 838
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 43/72 (59%)
Query: 187 KRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIFRH 246
K + +G G+T ++ IH WK +E VR+K G ++MK + LE KT G +I+R
Sbjct: 227 KHKTRIGGGGVTQAAVDKIHERWKTSEIVRLKFEGDAALNMKRMHEILEKKTGGLVIWRS 286
Query: 247 GGTLVLYRGRNY 258
G ++ LYRG +Y
Sbjct: 287 GNSVSLYRGVSY 298
Score = 43.1 bits (100), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 41/79 (51%), Gaps = 4/79 (5%)
Query: 185 RTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKII- 243
R K + LGR G+ + ++H HWK+ E V+I +K + LE ++ G ++
Sbjct: 644 RMKAFLLLGRRGVFDGTIENMHLHWKYRELVKIIVKANNFEHVKKIALALEAESGGVLVS 703
Query: 244 ---FRHGGTLVLYRGRNYN 259
G ++++YRG++Y
Sbjct: 704 VDKVSKGYSILVYRGKDYQ 722
>gi|15229636|ref|NP_188468.1| CRS1 / YhbY (CRM) domain-containing protein [Arabidopsis thaliana]
gi|11994102|dbj|BAB01105.1| unnamed protein product [Arabidopsis thaliana]
gi|17380904|gb|AAL36264.1| unknown protein [Arabidopsis thaliana]
gi|332642570|gb|AEE76091.1| CRS1 / YhbY (CRM) domain-containing protein [Arabidopsis thaliana]
Length = 848
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 73/147 (49%), Gaps = 11/147 (7%)
Query: 139 PKVKSAEEGAEDPNLEEKRILVRERIQGEPLTNAERKALVEKCHRNRTKR-------QIN 191
P K+ EE A + + E + V ++ + + AE VE R +R +IN
Sbjct: 206 PWEKNEEEQAAERVVGEGGVAVMQKRRARAPSLAE--LTVEDSELRRLRRDGMYLRVRIN 263
Query: 192 LGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIFRHGGTLV 251
+ + GLT ++ I++ W+ E VR+K V DMK +E +T G +I+R G +V
Sbjct: 264 IPKAGLTQAVMEKIYDTWRKEELVRLKFHEVLARDMKTAHEIVERRTGGMVIWRAGSVMV 323
Query: 252 LYRGRNYNPKKRPVIPLMLWRPHEPVY 278
+YRG +Y K PVI + P E ++
Sbjct: 324 VYRGLDY--KGPPVISNQMAGPKETLF 348
>gi|297830494|ref|XP_002883129.1| EMB1865 [Arabidopsis lyrata subsp. lyrata]
gi|297328969|gb|EFH59388.1| EMB1865 [Arabidopsis lyrata subsp. lyrata]
Length = 846
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 64/134 (47%), Gaps = 19/134 (14%)
Query: 162 ERIQGEPLTNAERKA----------LVEKCHRNRTKR-------QINLGRDGLTHNMLND 204
ER++GE +K VE R +R +IN+ + GLT ++
Sbjct: 217 ERVEGEGGVAVMKKGRARAPSLAELTVEDSELRRLRRDGMYLRVRINIPKAGLTQAVMEK 276
Query: 205 IHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIFRHGGTLVLYRGRNYNPKKRP 264
I++ W+ E VR+K V DMK +E +T G +I+R G +V+YRG +Y K P
Sbjct: 277 IYDTWRKEELVRLKFHEVLARDMKTAHEIVERRTGGMVIWRAGSVMVVYRGLDY--KGPP 334
Query: 265 VIPLMLWRPHEPVY 278
VI + P E ++
Sbjct: 335 VISNQMAGPKETLF 348
Score = 38.1 bits (87), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 51/103 (49%), Gaps = 8/103 (7%)
Query: 167 EPLTNAERKALVEKCHRNRTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVD 226
+ + + E +A+ K + K + LG G+ ++ ++H HWKH E V++
Sbjct: 650 QEVISEEERAMFRKVGL-KMKAYLPLGIRGVFDGVIENMHLHWKHRELVKLISKQKNLAF 708
Query: 227 MKNVCFQLEDKTFGKIIFRH----GGTLVLYRGRNYNPKKRPV 265
+++ LE ++ G ++ G L+ YRG+NY +RP+
Sbjct: 709 VEDTARLLEYESGGVLVAIEKVPKGFALIYYRGKNY---RRPI 748
>gi|414591664|tpg|DAA42235.1| TPA: CRM family member 3 [Zea mays]
Length = 1523
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 43/75 (57%)
Query: 185 RTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIF 244
R K + +G G+T ++ I WK E VR+K G P ++M+ LE KT G +I+
Sbjct: 864 RIKSRTKVGGAGVTREIVEKIKEKWKTEEVVRVKVSGTPALNMRLFHEILERKTGGLVIW 923
Query: 245 RHGGTLVLYRGRNYN 259
R G ++ LYRG +Y+
Sbjct: 924 RSGTSVSLYRGVDYD 938
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 41/78 (52%), Gaps = 4/78 (5%)
Query: 185 RTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKII- 243
R K + LGR G+ + ++H HWK+ E V+I D+K + LE ++ G ++
Sbjct: 1279 RMKAFLLLGRRGVFDGTIENMHLHWKYRELVKILVKAKSFADVKRIALSLEAESGGILVS 1338
Query: 244 ---FRHGGTLVLYRGRNY 258
G +V++RG+NY
Sbjct: 1339 VDKVSKGYAIVVFRGKNY 1356
>gi|224118814|ref|XP_002317913.1| predicted protein [Populus trichocarpa]
gi|222858586|gb|EEE96133.1| predicted protein [Populus trichocarpa]
Length = 806
Score = 57.8 bits (138), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 45/73 (61%)
Query: 187 KRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIFRH 246
+ +I++ + G+T+ +L +IH+ W+ E VR+K V DMK +E +T G +I+R
Sbjct: 217 RERISIPKAGITNAVLENIHDRWRKEELVRLKFHEVLAHDMKTAHEIVERRTGGLVIWRA 276
Query: 247 GGTLVLYRGRNYN 259
G +V++RG NY
Sbjct: 277 GSVMVVFRGTNYQ 289
Score = 39.3 bits (90), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 43/85 (50%), Gaps = 7/85 (8%)
Query: 185 RTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIF 244
R K + LG G+ ++ ++H HWKH E V++ +++ LE ++ G ++
Sbjct: 625 RMKAYLPLGIRGVFDGVIENMHLHWKHRELVKLISKQKTLAFVEDTAKLLEYESGGVLVA 684
Query: 245 RH----GGTLVLYRGRNYNPKKRPV 265
G L+ YRG+NY +RP+
Sbjct: 685 IERVPKGFALIYYRGKNY---RRPI 706
>gi|297738658|emb|CBI27903.3| unnamed protein product [Vitis vinifera]
Length = 881
Score = 57.8 bits (138), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 44/74 (59%)
Query: 185 RTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIF 244
R +I +G G+T ++++ IH W+ E V++K G + +MK LE +T G +I+
Sbjct: 278 RMLERIKVGAAGVTQSLVDAIHEKWRKDEVVKLKFEGPSSCNMKRTHEILETRTGGLVIW 337
Query: 245 RHGGTLVLYRGRNY 258
R G ++VLYRG Y
Sbjct: 338 RTGSSVVLYRGMAY 351
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 4/72 (5%)
Query: 192 LGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIFRH----G 247
LG G+ + ++H HWK+ E V+I G +K++ LE ++ G ++ G
Sbjct: 701 LGTRGIFDGTVENMHLHWKYRELVKIIVKGKNFAQVKHIAISLEAESGGVLVSVDRTPKG 760
Query: 248 GTLVLYRGRNYN 259
+++YRG+NY
Sbjct: 761 YAIIVYRGKNYQ 772
>gi|359484307|ref|XP_002279505.2| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Vitis vinifera]
Length = 884
Score = 57.8 bits (138), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 44/74 (59%)
Query: 185 RTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIF 244
R +I +G G+T ++++ IH W+ E V++K G + +MK LE +T G +I+
Sbjct: 281 RMLERIKVGAAGVTQSLVDAIHEKWRKDEVVKLKFEGPSSCNMKRTHEILETRTGGLVIW 340
Query: 245 RHGGTLVLYRGRNY 258
R G ++VLYRG Y
Sbjct: 341 RTGSSVVLYRGMAY 354
Score = 44.3 bits (103), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 4/72 (5%)
Query: 192 LGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIFRH----G 247
LG G+ + ++H HWK+ E V+I G +K++ LE ++ G ++ G
Sbjct: 704 LGTRGIFDGTVENMHLHWKYRELVKIIVKGKNFAQVKHIAISLEAESGGVLVSVDRTPKG 763
Query: 248 GTLVLYRGRNYN 259
+++YRG+NY
Sbjct: 764 YAIIVYRGKNYQ 775
>gi|168020023|ref|XP_001762543.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162686276|gb|EDQ72666.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 548
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 47/85 (55%), Gaps = 4/85 (4%)
Query: 185 RTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIF 244
+ K + +GR G+ + ++H HWK E VRI C P +K + LE + G +I
Sbjct: 239 KNKNYVPVGRRGIYGGTIQNMHMHWKKHETVRIDCDNFPKEKIKEMGETLERLSGGIVID 298
Query: 245 RH-GGTLVLYRGRNYNPKKRPVIPL 268
H G T++++RGRNY KRP + +
Sbjct: 299 IHQGTTIIMWRGRNY---KRPKVDI 320
>gi|159469243|ref|XP_001692777.1| predicted protein [Chlamydomonas reinhardtii]
gi|158278030|gb|EDP03796.1| predicted protein [Chlamydomonas reinhardtii]
Length = 321
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 47/84 (55%), Gaps = 6/84 (7%)
Query: 190 INLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDM---KNVCFQLEDKTFGKIIFRH 246
+ LG GL ++L + + W+++E V+++ + M VC LE +T G +++R
Sbjct: 139 VRLGPSGLNASVLTSVASAWRNSELVKLRIVSRANKYMPYITQVCAALEQRTGGLVVWRA 198
Query: 247 GGTLVLYRGRNYN---PKKRPVIP 267
GG++ L+RG Y+ P RP +P
Sbjct: 199 GGSIWLFRGAGYDAASPSGRPGLP 222
>gi|168038664|ref|XP_001771820.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162676951|gb|EDQ63428.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 1106
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 43/70 (61%)
Query: 189 QINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIFRHGG 248
++ +GR G+T ++ IH+ W+ +E ++KC +++MK LE T G +I+R G
Sbjct: 343 RLKIGRLGVTPGIVEAIHDRWRTSELAKVKCDAPLSMNMKKAHEDLERLTGGLVIWRAGS 402
Query: 249 TLVLYRGRNY 258
V+YRG++Y
Sbjct: 403 AAVVYRGKDY 412
Score = 45.4 bits (106), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 5/72 (6%)
Query: 192 LGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKII----FRHG 247
LGR G+ + ++H HWKH E V+I + P + + LE ++ G ++ G
Sbjct: 774 LGRRGVFGGTVENMHLHWKHRELVKI-LVKAPIAEAQQTAKMLERESGGILVDIVNTSKG 832
Query: 248 GTLVLYRGRNYN 259
+++YRG+NY
Sbjct: 833 QAIIVYRGKNYQ 844
>gi|326492672|dbj|BAJ90192.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 879
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 42/75 (56%)
Query: 185 RTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIF 244
R K + +G G+T ++ I W+ E VR+K G P ++M+ LE KT G +I+
Sbjct: 199 RIKSKTQVGGAGVTREIVAKIKEKWRTDEVVRVKVNGTPALNMRLFHEILERKTGGLVIW 258
Query: 245 RHGGTLVLYRGRNYN 259
R G ++ LYRG Y+
Sbjct: 259 RSGTSVSLYRGVAYD 273
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 61/133 (45%), Gaps = 24/133 (18%)
Query: 153 LEEKRILVRERIQG---------------EPLTNAERKALVEKCHRNRTKRQINLGRDGL 197
L EKRI ER+ G E +T+ ER + + R K + LGR G+
Sbjct: 570 LAEKRIAKAERVLGKVETALKPTEDTKPPETITDEER--FMFRKLGLRMKAFLLLGRRGV 627
Query: 198 THNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKII----FRHGGTLVLY 253
+ ++H HWK+ E V+I D+K LE ++ G ++ G +V++
Sbjct: 628 FDGTIENMHLHWKYRELVKILVKAKSFADVKRTALSLEVESGGVLVSVDKVSKGYAIVVF 687
Query: 254 RGRNYNPKKRPVI 266
RG++Y KRP +
Sbjct: 688 RGKDY---KRPSM 697
>gi|110742047|dbj|BAE98956.1| hypothetical protein [Arabidopsis thaliana]
Length = 717
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 43/74 (58%)
Query: 185 RTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIF 244
RT ++ + G+T ++ I WK AE VR+K G ++M+ + LE KT G +I+
Sbjct: 235 RTASKMRIRGGGVTQVAVDAIKEKWKSAEIVRLKIEGASALNMRKMHEILEKKTGGLVIW 294
Query: 245 RHGGTLVLYRGRNY 258
R G ++ LYRG +Y
Sbjct: 295 RSGTSISLYRGVSY 308
>gi|297734212|emb|CBI15459.3| unnamed protein product [Vitis vinifera]
Length = 830
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Query: 187 KRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIFRH 246
+ +IN+ + G+T +L IH W+ E VR+K DMK +E +T G + +R
Sbjct: 230 RERINVPKAGITQAVLGKIHEKWRKEELVRLKFHEALAHDMKTAHEIVERRTGGLVTWRS 289
Query: 247 GGTLVLYRGRNYN--PKKRPV 265
G +V++RG NY PK +PV
Sbjct: 290 GSVMVVFRGTNYEGPPKPQPV 310
Score = 39.3 bits (90), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 7/85 (8%)
Query: 185 RTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIF 244
R K + LG G+ ++ ++H HWKH E V++ +++ LE ++ G ++
Sbjct: 638 RMKAYLLLGVRGVFDGVIENMHLHWKHRELVKLISKQKTLAFVEDTARLLEYESGGILVA 697
Query: 245 RH----GGTLVLYRGRNYNPKKRPV 265
G L+ YRG+NY +RPV
Sbjct: 698 IERVPKGYALIYYRGKNY---RRPV 719
>gi|255582755|ref|XP_002532154.1| conserved hypothetical protein [Ricinus communis]
gi|223528164|gb|EEF30228.1| conserved hypothetical protein [Ricinus communis]
Length = 745
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 42/72 (58%)
Query: 187 KRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIFRH 246
+ ++N+ + GLT ++ IH+ W+ E VR+K V DMK E +T G +I+R
Sbjct: 226 RERVNVPKAGLTKEVVEKIHDKWRKNELVRLKFHEVLAHDMKTAHEITERRTGGLVIWRA 285
Query: 247 GGTLVLYRGRNY 258
G +V+YRG +Y
Sbjct: 286 GSVMVVYRGSSY 297
Score = 39.3 bits (90), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 7/85 (8%)
Query: 185 RTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIF 244
R K + LG G+ ++ ++H HWKH E V++ ++ LE ++ G ++
Sbjct: 634 RMKAYLPLGIRGVFDGVIENMHLHWKHRELVKLISKQKTLAFAEDTARLLEYESGGILVA 693
Query: 245 RH----GGTLVLYRGRNYNPKKRPV 265
G L+ YRG+NY +RP+
Sbjct: 694 IERVPKGFALIYYRGKNY---RRPI 715
>gi|147815878|emb|CAN72582.1| hypothetical protein VITISV_035294 [Vitis vinifera]
Length = 850
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Query: 187 KRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIFRH 246
+ +IN+ + G+T +L IH W+ E VR+K DMK +E +T G + +R
Sbjct: 230 RERINVPKAGITQAVLGKIHEKWRKEELVRLKFHEALAHDMKTAHEIVERRTGGLVTWRS 289
Query: 247 GGTLVLYRGRNYN--PKKRPV 265
G +V++RG NY PK +PV
Sbjct: 290 GSVMVVFRGTNYEGPPKPQPV 310
Score = 39.7 bits (91), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 7/85 (8%)
Query: 185 RTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIF 244
R K + LG G+ ++ ++H HWKH E V++ +++ LE ++ G ++
Sbjct: 638 RMKAYLLLGVRGVFDGVIENMHLHWKHRELVKLISKQKTLAFVEDTARLLEYESGGILVA 697
Query: 245 RH----GGTLVLYRGRNYNPKKRPV 265
G L+ YRG+NY +RPV
Sbjct: 698 IERVPKGYALIYYRGKNY---RRPV 719
>gi|9294196|dbj|BAB02098.1| unnamed protein product [Arabidopsis thaliana]
Length = 850
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 43/74 (58%)
Query: 185 RTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIF 244
RT ++ + G+T ++ I WK AE VR+K G ++M+ + LE KT G +I+
Sbjct: 204 RTASKMRIRGGGVTQVAVDAIKEKWKSAEIVRLKIEGASALNMRKMHEILEKKTGGLVIW 263
Query: 245 RHGGTLVLYRGRNY 258
R G ++ LYRG +Y
Sbjct: 264 RSGTSISLYRGVSY 277
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 41/79 (51%), Gaps = 7/79 (8%)
Query: 192 LGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKII----FRHG 247
LGR G+ + ++H HWK+ E V+I +K V LE ++ G ++ G
Sbjct: 628 LGRRGVFDGTVENMHLHWKYRELVKIIVKAKTFDGVKKVALALEAESGGILVSIDKVTKG 687
Query: 248 GTLVLYRGRNYNPKKRPVI 266
+++YRG++Y KRP +
Sbjct: 688 YAIIVYRGQDY---KRPTM 703
>gi|30686898|ref|NP_188947.2| CRM family member 3A [Arabidopsis thaliana]
gi|332643191|gb|AEE76712.1| CRM family member 3A [Arabidopsis thaliana]
Length = 881
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 43/74 (58%)
Query: 185 RTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIF 244
RT ++ + G+T ++ I WK AE VR+K G ++M+ + LE KT G +I+
Sbjct: 235 RTASKMRIRGGGVTQVAVDAIKEKWKSAEIVRLKIEGASALNMRKMHEILEKKTGGLVIW 294
Query: 245 RHGGTLVLYRGRNY 258
R G ++ LYRG +Y
Sbjct: 295 RSGTSISLYRGVSY 308
Score = 44.3 bits (103), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 41/79 (51%), Gaps = 7/79 (8%)
Query: 192 LGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKII----FRHG 247
LGR G+ + ++H HWK+ E V+I +K V LE ++ G ++ G
Sbjct: 659 LGRRGVFDGTVENMHLHWKYRELVKIIVKAKTFDGVKKVALALEAESGGILVSIDKVTKG 718
Query: 248 GTLVLYRGRNYNPKKRPVI 266
+++YRG++Y KRP +
Sbjct: 719 YAIIVYRGQDY---KRPTM 734
>gi|356564786|ref|XP_003550629.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Glycine max]
Length = 794
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 52/109 (47%), Gaps = 13/109 (11%)
Query: 162 ERIQGEPLTNAERKALVEKC---HRNRTKRQINL--------GRDGLTHNMLNDIHNHWK 210
ER+ GE L E+ H R R+I L G G+T ++ +H W+
Sbjct: 181 ERVNGERKKRRSNTELAERTIPEHELRRLRKIALRMMERFDVGVKGITQELVASVHQKWR 240
Query: 211 HAEAVRIKCLGVP-TVDMKNVCFQLEDKTFGKIIFRHGGTLVLYRGRNY 258
AE V+ K G+P + MK LE K G +I+R G ++VLYRG Y
Sbjct: 241 DAEVVKFK-FGIPLSAHMKKAHQILESKIGGIVIWRSGSSIVLYRGMAY 288
Score = 45.1 bits (105), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 51/97 (52%), Gaps = 7/97 (7%)
Query: 167 EPLTNAERKALVEKCHRNRTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVD 226
E LTN ER L K + K + LGR + + ++H HWK+ E V++ G +
Sbjct: 615 ETLTNEER-FLFRKIGLS-MKPYLLLGRRDVYAGTIENMHLHWKYRELVKLIVKGRNSAQ 672
Query: 227 MKNVCFQLEDKTFGKII-----FRHGGTLVLYRGRNY 258
+K++ LE ++ G ++ R T+++YRG+NY
Sbjct: 673 VKHISISLEAESGGVLVSVDKDTRGHHTIIVYRGKNY 709
>gi|224091282|ref|XP_002309217.1| predicted protein [Populus trichocarpa]
gi|222855193|gb|EEE92740.1| predicted protein [Populus trichocarpa]
Length = 977
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 43/74 (58%)
Query: 185 RTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIF 244
R +I +G G+T ++++ IH WK E V++K + +MK LE +T G II+
Sbjct: 378 RMLERIKVGATGITQDLVDAIHEKWKLDEVVKLKFEWPLSCNMKRTHEILESRTGGLIIW 437
Query: 245 RHGGTLVLYRGRNY 258
R G ++V+YRG Y
Sbjct: 438 RSGSSVVMYRGTTY 451
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 4/71 (5%)
Query: 192 LGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKII----FRHG 247
LGR G+ + ++H HWK+ E V+I +K++ LE ++ G ++ G
Sbjct: 801 LGRRGVFDGTIENMHLHWKYRELVKIIVERKGIAQVKHIAISLEAESGGVLVSVDRTTKG 860
Query: 248 GTLVLYRGRNY 258
+++YRG+NY
Sbjct: 861 YAIIVYRGKNY 871
>gi|297831030|ref|XP_002883397.1| hypothetical protein ARALYDRAFT_898801 [Arabidopsis lyrata subsp.
lyrata]
gi|297329237|gb|EFH59656.1| hypothetical protein ARALYDRAFT_898801 [Arabidopsis lyrata subsp.
lyrata]
Length = 873
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 43/74 (58%)
Query: 185 RTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIF 244
RT ++ + G+T ++ I WK AE VR+K G ++M+ + LE KT G +I+
Sbjct: 233 RTASKMRIRGAGVTQVAVDAIKEKWKSAEIVRLKIEGASALNMRKMHEILEKKTGGLVIW 292
Query: 245 RHGGTLVLYRGRNY 258
R G ++ LYRG +Y
Sbjct: 293 RSGTSISLYRGVSY 306
Score = 44.3 bits (103), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 41/79 (51%), Gaps = 7/79 (8%)
Query: 192 LGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKII----FRHG 247
LGR G+ + ++H HWK+ E V+I +K V LE ++ G ++ G
Sbjct: 654 LGRRGVFDGTVENMHLHWKYRELVKIIVKAKTFDGVKKVALALEAESGGILVSIDKVTKG 713
Query: 248 GTLVLYRGRNYNPKKRPVI 266
+++YRG++Y KRP +
Sbjct: 714 YAIIVYRGKDY---KRPTM 729
>gi|168024308|ref|XP_001764678.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162683972|gb|EDQ70377.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 625
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 41/70 (58%)
Query: 189 QINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIFRHGG 248
++ +GR G+T ++ IH W+ E ++KC +++MK LE T G +I+R G
Sbjct: 51 RLKIGRLGVTPGIVEAIHERWRTCEIAKVKCDAPLSMNMKKAHEDLERLTGGLVIWRSGS 110
Query: 249 TLVLYRGRNY 258
V+YRG++Y
Sbjct: 111 AAVVYRGKDY 120
Score = 40.0 bits (92), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 5/72 (6%)
Query: 192 LGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKII----FRHG 247
LGR G+ + ++H HWK+ E V+I + + + + LE+++ G ++ G
Sbjct: 463 LGRRGVFSGTVENMHLHWKYRELVKI-LVKTSLPEAERIAKILENESGGILVDIITTSKG 521
Query: 248 GTLVLYRGRNYN 259
+V+YRG+NY
Sbjct: 522 QAIVMYRGKNYQ 533
>gi|334187011|ref|NP_194704.2| CRS1 / YhbY (CRM) domain-containing protein [Arabidopsis thaliana]
gi|332660271|gb|AEE85671.1| CRS1 / YhbY (CRM) domain-containing protein [Arabidopsis thaliana]
Length = 841
Score = 54.3 bits (129), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 44/77 (57%)
Query: 185 RTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIF 244
R ++ +G G+T ++ IH W+ E V++K +++MK LE KT G +I+
Sbjct: 258 RMVERVKVGSAGITQALVEAIHEKWEVDEVVKLKFSEPYSLNMKRTHEVLEKKTGGLVIW 317
Query: 245 RHGGTLVLYRGRNYNPK 261
R G ++VLYRG +Y K
Sbjct: 318 RSGSSVVLYRGISYKLK 334
Score = 47.0 bits (110), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 4/72 (5%)
Query: 192 LGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKII----FRHG 247
LGR + + ++H HWKH E V++ G +K++ LE ++ G ++ G
Sbjct: 668 LGRREVYDGTIENMHLHWKHRELVKVIVRGKSLPQVKHIAISLEAESGGVLVSVDKTMKG 727
Query: 248 GTLVLYRGRNYN 259
++LYRG+NY
Sbjct: 728 YAIILYRGKNYQ 739
>gi|125553229|gb|EAY98938.1| hypothetical protein OsI_20893 [Oryza sativa Indica Group]
Length = 801
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 44/77 (57%), Gaps = 3/77 (3%)
Query: 189 QINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIFRHGG 248
+I + + G+T + IH+ W+ +E VR+K DMK +E +T G II+R G
Sbjct: 206 RITVPKAGVTQAVTEKIHDAWRKSELVRLKFHEDLAHDMKTAHELVERRTGGLIIWRSGS 265
Query: 249 TLVLYRGRNYNPKKRPV 265
+V+YRG NY KRP+
Sbjct: 266 VMVVYRGSNY---KRPL 279
Score = 38.1 bits (87), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 7/85 (8%)
Query: 185 RTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRI--KCLGVPTVDMKNVCFQLEDKTFGKI 242
R K + +G G+ ++ ++H HWKH E V++ K +P V+ + E
Sbjct: 615 RLKAYLPVGIRGVFDGVIENMHLHWKHREVVKLITKQKTLPFVEETARLLEYESGGILVA 674
Query: 243 IFR--HGGTLVLYRGRNYNPKKRPV 265
I R G L+ YRG+NY +RP+
Sbjct: 675 IERVPKGYALIFYRGKNY---RRPI 696
>gi|47900539|gb|AAT39274.1| unknown protein [Oryza sativa Japonica Group]
gi|50878415|gb|AAT85189.1| hypothetical protein [Oryza sativa Japonica Group]
Length = 798
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 44/77 (57%), Gaps = 3/77 (3%)
Query: 189 QINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIFRHGG 248
+I + + G+T + IH+ W+ +E VR+K DMK +E +T G II+R G
Sbjct: 203 RITVPKAGVTQAVTEKIHDAWRKSELVRLKFHEDLAHDMKTAHELVERRTGGLIIWRSGS 262
Query: 249 TLVLYRGRNYNPKKRPV 265
+V+YRG NY KRP+
Sbjct: 263 VMVVYRGSNY---KRPL 276
Score = 38.1 bits (87), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 7/85 (8%)
Query: 185 RTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRI--KCLGVPTVDMKNVCFQLEDKTFGKI 242
R K + +G G+ ++ ++H HWKH E V++ K +P V+ + E
Sbjct: 612 RLKAYLPVGIRGVFDGVIENMHLHWKHREVVKLITKQKTLPFVEETARLLEYESGGILVA 671
Query: 243 IFR--HGGTLVLYRGRNYNPKKRPV 265
I R G L+ YRG+NY +RP+
Sbjct: 672 IERVTKGYALIFYRGKNY---RRPI 693
>gi|356567264|ref|XP_003551841.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Glycine max]
Length = 712
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 55/109 (50%), Gaps = 15/109 (13%)
Query: 167 EPLTNAERKALVEKCHRN---RTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVP 223
E +T+ ER+ C R + + + LGR G+ +L +H HWKH E V++ +
Sbjct: 555 EIMTDEERE-----CFRKIGLKMQSSLLLGRRGIFDGVLEGLHQHWKHREVVKVITMQKL 609
Query: 224 TVDMKNVCFQLEDKTFGKII----FRHGGTLVLYRGRNYNPKKRPVIPL 268
+ N LE ++ G ++ + G +++YRG+NY KRP I L
Sbjct: 610 FSQVINTAKVLETESGGILVSVDKLKEGHAIIIYRGKNY---KRPSIKL 655
>gi|326507446|dbj|BAK03116.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 775
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 41/72 (56%)
Query: 187 KRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIFRH 246
K +I + + G+T + IH+ W+ +E VR+K DMK +E +T G II+R
Sbjct: 193 KDRITVPKAGVTQAITEKIHDAWRKSELVRLKFHEDHANDMKTAHELVERRTGGLIIWRA 252
Query: 247 GGTLVLYRGRNY 258
G +V+YRG NY
Sbjct: 253 GSVMVVYRGSNY 264
>gi|222632479|gb|EEE64611.1| hypothetical protein OsJ_19463 [Oryza sativa Japonica Group]
Length = 601
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 44/77 (57%), Gaps = 3/77 (3%)
Query: 189 QINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIFRHGG 248
+I + + G+T + IH+ W+ +E VR+K DMK +E +T G II+R G
Sbjct: 6 RITVPKAGVTQAVTEKIHDAWRKSELVRLKFHEDLAHDMKTAHELVERRTGGLIIWRSGS 65
Query: 249 TLVLYRGRNYNPKKRPV 265
+V+YRG NY KRP+
Sbjct: 66 VMVVYRGSNY---KRPL 79
Score = 37.7 bits (86), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 7/85 (8%)
Query: 185 RTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRI--KCLGVPTVDMKNVCFQLEDKTFGKI 242
R K + +G G+ ++ ++H HWKH E V++ K +P V+ + E
Sbjct: 415 RLKAYLPVGIRGVFDGVIENMHLHWKHREVVKLITKQKTLPFVEETARLLEYESGGILVA 474
Query: 243 IFR--HGGTLVLYRGRNYNPKKRPV 265
I R G L+ YRG+NY +RP+
Sbjct: 475 IERVTKGYALIFYRGKNY---RRPI 496
>gi|357516865|ref|XP_003628721.1| Chloroplastic group IIA intron splicing facilitator CRS1 [Medicago
truncatula]
gi|355522743|gb|AET03197.1| Chloroplastic group IIA intron splicing facilitator CRS1 [Medicago
truncatula]
Length = 387
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 40/70 (57%)
Query: 189 QINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIFRHGG 248
+ +G G+TH +++ IH W E V+ K + +MK LE KT G +++R G
Sbjct: 8 RFGVGVAGITHELVDAIHEKWMVDEVVKFKFDSPLSANMKRANQILESKTGGIVVWRLGS 67
Query: 249 TLVLYRGRNY 258
++VLYRG +Y
Sbjct: 68 SIVLYRGMSY 77
>gi|357128578|ref|XP_003565949.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Brachypodium distachyon]
Length = 782
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 40/70 (57%)
Query: 189 QINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIFRHGG 248
+I + + G+T + IH+ W+ +E VR+K DMK +E +T G II+R G
Sbjct: 198 RITVPKAGVTQAVTEKIHDAWRKSELVRLKFHEDLANDMKTAHELVERRTGGLIIWRAGS 257
Query: 249 TLVLYRGRNY 258
+V+YRG NY
Sbjct: 258 VMVVYRGNNY 267
>gi|297800788|ref|XP_002868278.1| hypothetical protein ARALYDRAFT_330061 [Arabidopsis lyrata subsp.
lyrata]
gi|297314114|gb|EFH44537.1| hypothetical protein ARALYDRAFT_330061 [Arabidopsis lyrata subsp.
lyrata]
Length = 919
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 52/105 (49%), Gaps = 6/105 (5%)
Query: 155 EKRILVRERIQGEPLTNAERKALVEKCHRNRTKRQINLGRDGLTHNMLNDIHNHWKHAEA 214
E R + ER E N R + RTK ++ + G+T +++ I WK +E
Sbjct: 202 ESRYSLAERTLSESELNRLRNVMF------RTKSKMRVTGAGVTQAVVDAIQEKWKSSEI 255
Query: 215 VRIKCLGVPTVDMKNVCFQLEDKTFGKIIFRHGGTLVLYRGRNYN 259
VR+K G ++M+ + LE KT G +I+R G ++ LY + N
Sbjct: 256 VRLKIEGASALNMRRMHEILERKTGGLVIWRSGTSIALYNYKGGN 300
Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 7/84 (8%)
Query: 185 RTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKII- 243
R K + LGR G+ + ++H HWK+ E ++I K V LE ++ G ++
Sbjct: 684 RMKAFLLLGRRGVFDGTVENMHLHWKYRELIKILVKAKSLEGAKKVAMALEAESGGILVS 743
Query: 244 ---FRHGGTLVLYRGRNYNPKKRP 264
G +++YRG++Y KRP
Sbjct: 744 VDKISKGYAVIVYRGKDY---KRP 764
>gi|255546121|ref|XP_002514120.1| conserved hypothetical protein [Ricinus communis]
gi|223546576|gb|EEF48074.1| conserved hypothetical protein [Ricinus communis]
Length = 930
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 44/74 (59%)
Query: 185 RTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIF 244
R +I +G G+ ++++ +H W+ E V++K + +M+ LE++T G +I+
Sbjct: 340 RMYERIKVGAAGINQDLVDAVHEKWRLDEVVKLKFEEPLSFNMRRTHEILENRTGGLVIW 399
Query: 245 RHGGTLVLYRGRNY 258
R G ++VLYRG +Y
Sbjct: 400 RSGSSVVLYRGISY 413
Score = 45.8 bits (107), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 39/71 (54%), Gaps = 4/71 (5%)
Query: 192 LGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKII----FRHG 247
LG+ G+ + ++H HWK+ E V++ G +K++ LE ++ G ++ G
Sbjct: 763 LGKRGVYDGTIENMHLHWKYRELVKVIVRGKSFAQVKHIAISLEAESGGVLVSIERTTKG 822
Query: 248 GTLVLYRGRNY 258
+++YRG+NY
Sbjct: 823 YAIIVYRGKNY 833
>gi|357145812|ref|XP_003573775.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Brachypodium distachyon]
Length = 730
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 5/81 (6%)
Query: 189 QINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKII----F 244
+ LGR G+ ++ +IH HWKH E V++ + + LE +T G +I
Sbjct: 598 HVLLGRRGVFDGVIEEIHQHWKHKEIVKVITKQNQSYQITYTSMLLEVETGGVLIATQKL 657
Query: 245 RHGGTLVLYRGRNY-NPKKRP 264
H ++LYRG+NY P+K P
Sbjct: 658 PHSHAIILYRGKNYRRPEKSP 678
>gi|334186525|ref|NP_193187.3| CRM family member 3B [Arabidopsis thaliana]
gi|332658053|gb|AEE83453.1| CRM family member 3B [Arabidopsis thaliana]
Length = 907
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 41/69 (59%)
Query: 185 RTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIF 244
RTK ++ + G+T +++ I WK +E VR+K G ++M+ + LE KT G +I+
Sbjct: 236 RTKSKMRVTGAGVTQAVVDAIQEKWKGSEIVRLKIEGSSALNMRRMHEILERKTGGLVIW 295
Query: 245 RHGGTLVLY 253
R G ++ LY
Sbjct: 296 RSGTSIALY 304
Score = 42.4 bits (98), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 7/77 (9%)
Query: 192 LGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKII----FRHG 247
LGR G+ + ++H HWK+ E ++I + V LE ++ G ++ G
Sbjct: 686 LGRRGVFDGTVENMHLHWKYRELIKILVKAKTLEGAQKVAMALEAESGGILVSVDKISKG 745
Query: 248 GTLVLYRGRNYNPKKRP 264
+++YRG++Y KRP
Sbjct: 746 YAVIVYRGKDY---KRP 759
>gi|115476078|ref|NP_001061635.1| Os08g0360100 [Oryza sativa Japonica Group]
gi|75132343|sp|Q6YYA3.1|CRS1_ORYSJ RecName: Full=Chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic; AltName: Full=Chloroplastic RNA
splicing factor 1; AltName: Full=Protein CHLOROPLAST RNA
SPLICING 1; Flags: Precursor
gi|38637564|dbj|BAD03815.1| putative CRS1 [Oryza sativa Japonica Group]
gi|113623604|dbj|BAF23549.1| Os08g0360100 [Oryza sativa Japonica Group]
Length = 725
Score = 50.8 bits (120), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Query: 189 QINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKII----F 244
+ LGR G+ ++ +IH HWKH E V++ + LE +T G +I F
Sbjct: 584 HVLLGRRGVFEGVIEEIHQHWKHKEVVKVITKQNQASQITYTSMMLEVETGGTLIAIERF 643
Query: 245 RHGGTLVLYRGRNY 258
++LYRG+NY
Sbjct: 644 TTSHAIILYRGKNY 657
>gi|222640429|gb|EEE68561.1| hypothetical protein OsJ_27045 [Oryza sativa Japonica Group]
Length = 725
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Query: 189 QINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKII----F 244
+ LGR G+ ++ +IH HWKH E V++ + LE +T G +I F
Sbjct: 584 HVLLGRRGVFEGVIEEIHQHWKHKEVVKVITKQNQASQITYTSMMLEVETGGTLIAIERF 643
Query: 245 RHGGTLVLYRGRNY 258
++LYRG+NY
Sbjct: 644 TTSHAIILYRGKNY 657
>gi|2244807|emb|CAB10230.1| hypothetical protein [Arabidopsis thaliana]
gi|7268157|emb|CAB78493.1| hypothetical protein [Arabidopsis thaliana]
Length = 918
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 41/69 (59%)
Query: 185 RTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIF 244
RTK ++ + G+T +++ I WK +E VR+K G ++M+ + LE KT G +I+
Sbjct: 222 RTKSKMRVTGAGVTQAVVDAIQEKWKGSEIVRLKIEGSSALNMRRMHEILERKTGGLVIW 281
Query: 245 RHGGTLVLY 253
R G ++ LY
Sbjct: 282 RSGTSIALY 290
Score = 42.0 bits (97), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 7/77 (9%)
Query: 192 LGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKII----FRHG 247
LGR G+ + ++H HWK+ E ++I + V LE ++ G ++ G
Sbjct: 697 LGRRGVFDGTVENMHLHWKYRELIKILVKAKTLEGAQKVAMALEAESGGILVSVDKISKG 756
Query: 248 GTLVLYRGRNYNPKKRP 264
+++YRG++Y KRP
Sbjct: 757 YAVIVYRGKDY---KRP 770
>gi|356522763|ref|XP_003530015.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Glycine max]
Length = 734
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 41/75 (54%)
Query: 185 RTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIF 244
R + ++++ + GLT ++ IH W+ E VR+K DM+ +E +T G + +
Sbjct: 198 RVRERVSVPKAGLTQEVMEKIHKRWRKEELVRLKFHEELAKDMRKAHEIVERRTGGLVTW 257
Query: 245 RHGGTLVLYRGRNYN 259
R G +++YRG +Y
Sbjct: 258 RSGSVMMVYRGIDYQ 272
Score = 38.1 bits (87), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 7/85 (8%)
Query: 185 RTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKII- 243
R K + LG G+ ++ ++H HWKH E V++ +++ LE ++ G ++
Sbjct: 603 RMKPYLPLGIRGVFDGVVENMHLHWKHRELVKLMTKQKTVAFVEDTARLLEYESGGILVA 662
Query: 244 ---FRHGGTLVLYRGRNYNPKKRPV 265
L+ YRG+NY KRP+
Sbjct: 663 IEKVSKEFALIYYRGKNY---KRPI 684
>gi|356529577|ref|XP_003533366.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Glycine max]
Length = 791
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 41/75 (54%)
Query: 185 RTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIF 244
R + ++++ + GLT ++ IH W+ E VR+K DM+ +E +T G + +
Sbjct: 199 RVRERVSVPKAGLTEEVMEKIHKRWRKEELVRLKFHEELAKDMRKAHEIVERRTGGLVTW 258
Query: 245 RHGGTLVLYRGRNYN 259
R G +++YRG +Y
Sbjct: 259 RSGSVMMVYRGIDYQ 273
Score = 37.7 bits (86), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 7/85 (8%)
Query: 185 RTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKII- 243
R K + LG G+ ++ ++H HWKH E V++ +++ LE ++ G ++
Sbjct: 603 RMKPYLPLGIRGVFDGVVENMHLHWKHRELVKLMTKQKTLAFVEDTARLLEYESGGILVA 662
Query: 244 ---FRHGGTLVLYRGRNYNPKKRPV 265
L+ YRG+NY KRP+
Sbjct: 663 IEKVSKEFALIYYRGKNY---KRPI 684
>gi|255551422|ref|XP_002516757.1| conserved hypothetical protein [Ricinus communis]
gi|223544130|gb|EEF45655.1| conserved hypothetical protein [Ricinus communis]
Length = 742
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 54/107 (50%), Gaps = 6/107 (5%)
Query: 167 EPLTNAERKALVEKCHRNRTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVD 226
E +T ER+ L + + R+ + LGR G+ ++ +H HWKH E V++ L
Sbjct: 592 EMMTEEERECLRKIGLKMRS--SLLLGRRGVFDGVIEGLHQHWKHREVVKVISLQRMFAQ 649
Query: 227 MKNVCFQLEDKTFGKII----FRHGGTLVLYRGRNYNPKKRPVIPLM 269
+ LE +T G ++ + G +++YRG+NY +R + L+
Sbjct: 650 VIRTAKFLEAETGGILVSIDKLKEGHAIIIYRGKNYRRPQRLLNNLL 696
>gi|218201029|gb|EEC83456.1| hypothetical protein OsI_28955 [Oryza sativa Indica Group]
Length = 514
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 4/71 (5%)
Query: 192 LGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKII----FRHG 247
LGR G+ ++ +IH HWKH E V++ + LE +T G +I F
Sbjct: 376 LGRRGVFEGVIEEIHQHWKHKEVVKVITKQNQANQITYTSMMLEVETGGTLIAIERFTTS 435
Query: 248 GTLVLYRGRNY 258
++LYRG+NY
Sbjct: 436 HAIILYRGKNY 446
>gi|357500379|ref|XP_003620478.1| Chloroplastic group IIA intron splicing facilitator CRS1 [Medicago
truncatula]
gi|355495493|gb|AES76696.1| Chloroplastic group IIA intron splicing facilitator CRS1 [Medicago
truncatula]
Length = 820
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 41/73 (56%)
Query: 187 KRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIFRH 246
+ ++++ + GLT ++ IH W+ E VR+K +M+ +E +T G + +R
Sbjct: 229 RERVSVPKAGLTQEVMEKIHESWRKKELVRLKFHEELAKNMRIAHQIVERRTGGLVTWRA 288
Query: 247 GGTLVLYRGRNYN 259
G +++YRG+NY
Sbjct: 289 GSVMIVYRGKNYQ 301
Score = 38.9 bits (89), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 52/111 (46%), Gaps = 25/111 (22%)
Query: 167 EPLTNAERKALVEKCHRNRTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVD 226
E +T+ ER +V + R K + LG G+ ++ ++H HWKH E V++
Sbjct: 619 ETITDEER--VVFRQIGLRMKAYLQLGIRGVFDGVIENMHLHWKHRELVKL------VTK 670
Query: 227 MKNVCFQLEDKTFGKIIFRHGGTLVL------------YRGRNYNPKKRPV 265
KN F +ED T + + GG LV YRG+NY KRP+
Sbjct: 671 QKNRAF-VED-TARLLEYESGGILVAIEKVSKEFAIIYYRGKNY---KRPL 716
>gi|186523322|ref|NP_197122.2| ortholog of maize chloroplast splicing factor CRS1 [Arabidopsis
thaliana]
gi|374095377|sp|Q9LF10.2|CRS1_ARATH RecName: Full=Chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic; AltName: Full=Chloroplastic RNA
splicing factor 1; AltName: Full=Protein CHLOROPLAST RNA
SPLICING 1; Flags: Precursor
gi|332004875|gb|AED92258.1| ortholog of maize chloroplast splicing factor CRS1 [Arabidopsis
thaliana]
Length = 720
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 52/110 (47%), Gaps = 15/110 (13%)
Query: 167 EPLTNAERKALVEKCHRN---RTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVP 223
E LTN ER+ C R + + LGR G+ ++ +H HWKH E ++ +
Sbjct: 570 EILTNEERE-----CLRRIGLKMNSSLVLGRRGVFFGVMEGLHQHWKHREVAKVITMQKL 624
Query: 224 TVDMKNVCFQLEDKTFGKII----FRHGGTLVLYRGRNYNPKKRPVIPLM 269
+ LE ++ G +I + G +++YRG+NY KRP LM
Sbjct: 625 FSRVVYTAKALETESNGVLISIEKLKEGHAILIYRGKNY---KRPSSKLM 671
>gi|9755828|emb|CAC01859.1| putative protein [Arabidopsis thaliana]
Length = 718
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 52/110 (47%), Gaps = 15/110 (13%)
Query: 167 EPLTNAERKALVEKCHRN---RTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVP 223
E LTN ER+ C R + + LGR G+ ++ +H HWKH E ++ +
Sbjct: 568 EILTNEERE-----CLRRIGLKMNSSLVLGRRGVFFGVMEGLHQHWKHREVAKVITMQKL 622
Query: 224 TVDMKNVCFQLEDKTFGKII----FRHGGTLVLYRGRNYNPKKRPVIPLM 269
+ LE ++ G +I + G +++YRG+NY KRP LM
Sbjct: 623 FSRVVYTAKALETESNGVLISIEKLKEGHAILIYRGKNY---KRPSSKLM 669
>gi|307106930|gb|EFN55174.1| hypothetical protein CHLNCDRAFT_52520 [Chlorella variabilis]
Length = 187
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 9/76 (11%)
Query: 190 INLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIFRHGGT 249
I LGR G + N + R+ C G +MK + QLE T G ++ + GGT
Sbjct: 82 IKLGRRGPAEGLANQV---------ARVYCHGKHAANMKVLVQQLEAATGGMVVHKAGGT 132
Query: 250 LVLYRGRNYNPKKRPV 265
++LYRG + +P+
Sbjct: 133 VLLYRGDGWQGGAQPL 148
>gi|162463484|ref|NP_001105008.1| chloroplastic group IIA intron splicing facilitator CRS1,
chloroplastic precursor [Zea mays]
gi|75173308|sp|Q9FYT6.1|CRS1_MAIZE RecName: Full=Chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic; AltName: Full=Chloroplastic RNA
splicing factor 1; AltName: Full=Protein CHLOROPLAST RNA
SPLICING 1; Flags: Precursor
gi|9837550|gb|AAG00595.1|AF290414_1 CRS1 [Zea mays]
Length = 715
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 49/98 (50%), Gaps = 10/98 (10%)
Query: 171 NAERKALVE--KCHRNRTKRQIN----LGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPT 224
+A+R+ L E K R R+++ LGR G+ ++ +IH HWKH E V++ T
Sbjct: 558 SADREHLTEEEKIMFRRIGRKMDGLVLLGRRGIFDGVIEEIHQHWKHKEVVKVITKQNQT 617
Query: 225 VDMKNVCFQLEDKTFGKII----FRHGGTLVLYRGRNY 258
+ LE +T G +I ++LYRG+NY
Sbjct: 618 RQIMYAASLLEVETGGILIAVEKLTTSHAIILYRGKNY 655
>gi|414870652|tpg|DAA49209.1| TPA: chloroplast RNA splicing1 [Zea mays]
Length = 715
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 49/98 (50%), Gaps = 10/98 (10%)
Query: 171 NAERKALVE--KCHRNRTKRQIN----LGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPT 224
+A+R+ L E K R R+++ LGR G+ ++ +IH HWKH E V++ T
Sbjct: 558 SADREHLTEEEKIMFRRIGRKMDGLVLLGRRGIFDGVIEEIHQHWKHKEVVKVITKQNQT 617
Query: 225 VDMKNVCFQLEDKTFGKII----FRHGGTLVLYRGRNY 258
+ LE +T G +I ++LYRG+NY
Sbjct: 618 RQIMYAASLLEVETGGILIAVEKLTTSHAIILYRGKNY 655
>gi|326499694|dbj|BAJ86158.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 730
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Query: 189 QINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKII----F 244
+ LGR G+ ++ +IH HWKH E V++ + LE +T G +I
Sbjct: 597 HVLLGRRGIFDGVIEEIHQHWKHKEIVKVITKQNQAYQITYTSMLLEVETGGMLIATQKL 656
Query: 245 RHGGTLVLYRGRNYN 259
+ ++LYRG+NY+
Sbjct: 657 TNSHAIILYRGKNYH 671
>gi|326492786|dbj|BAJ90249.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 730
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Query: 189 QINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKII----F 244
+ LGR G+ ++ +IH HWKH E V++ + LE +T G +I
Sbjct: 597 HVLLGRRGIFDGVIEEIHQHWKHKEIVKVITKQNQAYQITYTSMLLEVETGGMLIATQKL 656
Query: 245 RHGGTLVLYRGRNYN 259
+ ++LYRG+NY+
Sbjct: 657 TNSHAIILYRGKNYH 671
>gi|224127512|ref|XP_002329296.1| predicted protein [Populus trichocarpa]
gi|222870750|gb|EEF07881.1| predicted protein [Populus trichocarpa]
Length = 687
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 42/78 (53%), Gaps = 7/78 (8%)
Query: 192 LGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKII----FRHG 247
LGR G+ ++ +H HWKH E V++ + + + LE ++ G ++ + G
Sbjct: 549 LGRRGVFEGVMEGLHQHWKHREVVKVITMQRVFSQVIHTATLLEAESDGILVSVDKLKEG 608
Query: 248 GTLVLYRGRNYNPKKRPV 265
+++YRG+NY KRP+
Sbjct: 609 HAIIIYRGKNY---KRPL 623
>gi|310779504|ref|YP_003967837.1| hypothetical protein [Ilyobacter polytropus DSM 2926]
gi|309748827|gb|ADO83489.1| protein of unknown function UPF0044 [Ilyobacter polytropus DSM
2926]
Length = 101
Score = 47.8 bits (112), Expect = 0.009, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 40/71 (56%)
Query: 190 INLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIFRHGGT 249
+ +G+DG++HN++ + E +++K L VD K V F+L +KT +++ G T
Sbjct: 22 VRIGKDGMSHNLVESFLQAIESRELIKVKILQNSEVDKKEVAFELAEKTGSELVGIIGKT 81
Query: 250 LVLYRGRNYNP 260
L+ Y+ NP
Sbjct: 82 LIFYKENKDNP 92
>gi|407716712|ref|YP_006837992.1| 23S rRNA methyltransferase J [Cycloclasticus sp. P1]
gi|407257048|gb|AFT67489.1| 23S rRNA methyltransferase J [Cycloclasticus sp. P1]
Length = 95
Score = 47.4 bits (111), Expect = 0.011, Method: Composition-based stats.
Identities = 28/86 (32%), Positives = 46/86 (53%), Gaps = 2/86 (2%)
Query: 169 LTNAERKALVEKCHRNRTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMK 228
L+N ++K L K H + K + LG+ GLT N+L++I + H E +++K D K
Sbjct: 3 LSNQQKKKL--KAHAHSLKPVVRLGQSGLTSNVLDEIESAITHHELIKVKVSADDRDDKK 60
Query: 229 NVCFQLEDKTFGKIIFRHGGTLVLYR 254
+ ++ DKT ++I G V YR
Sbjct: 61 AIIQEIADKTASELIQSIGFMAVFYR 86
>gi|225452088|ref|XP_002280704.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Vitis vinifera]
Length = 1184
Score = 47.4 bits (111), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 53/105 (50%), Gaps = 13/105 (12%)
Query: 171 NAERKALVEK---CHR---NRTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPT 224
+A+++ + E+ C R + + LGR G+ ++ +H HWKH E V++ +
Sbjct: 629 DADKEMITEEERECFRKIGQKMDSSLLLGRRGVFDGVIEGLHQHWKHREIVKVITMQRSF 688
Query: 225 VDMKNVCFQLEDKTFGKII----FRHGGTLVLYRGRNYNPKKRPV 265
+ LE ++ G ++ + G +++YRG+NY +RP+
Sbjct: 689 SQVLYTAKLLESESGGVLVSIDKLKEGHAIIIYRGKNY---RRPI 730
Score = 45.1 bits (105), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 58/118 (49%), Gaps = 5/118 (4%)
Query: 147 GAEDPNLEEKRILVRERIQGEPLTNAERK---ALVEKCHRNRTK--RQINLGRDGLTHNM 201
G + P L+ ++++ R + + +T AE L+E+ K + + + + G+T ++
Sbjct: 173 GGKMPWLKTEKVVFRRTKKEKVVTAAELTLDPMLLERLRGEAVKMRKWVKVKKAGVTESV 232
Query: 202 LNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIFRHGGTLVLYRGRNYN 259
++ IH WK E +K +M LE KT G +I+ TLV+YRG NY
Sbjct: 233 VDQIHMVWKSDELAMVKFDMPLCRNMDRAREILEIKTRGLVIWSKKDTLVVYRGSNYQ 290
>gi|297803062|ref|XP_002869415.1| hypothetical protein ARALYDRAFT_328739 [Arabidopsis lyrata subsp.
lyrata]
gi|297315251|gb|EFH45674.1| hypothetical protein ARALYDRAFT_328739 [Arabidopsis lyrata subsp.
lyrata]
Length = 775
Score = 47.4 bits (111), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 4/72 (5%)
Query: 192 LGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKII----FRHG 247
LGR + + ++H HWKH E V++ G +K++ LE ++ G ++ G
Sbjct: 625 LGRREVYDGTIENMHLHWKHRELVKVIVRGKSLPQVKHIAISLEAESGGVLVSVDKTMKG 684
Query: 248 GTLVLYRGRNYN 259
+++LYRG+NY
Sbjct: 685 YSIILYRGKNYQ 696
>gi|296087258|emb|CBI33632.3| unnamed protein product [Vitis vinifera]
Length = 529
Score = 47.0 bits (110), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 51/106 (48%), Gaps = 15/106 (14%)
Query: 167 EPLTNAERKALVEKCHR---NRTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVP 223
E +T ER+ C R + + LGR G+ ++ +H HWKH E V++ +
Sbjct: 334 EMITEEERE-----CFRKIGQKMDSSLLLGRRGVFDGVIEGLHQHWKHREIVKVITMQRS 388
Query: 224 TVDMKNVCFQLEDKTFGKII----FRHGGTLVLYRGRNYNPKKRPV 265
+ LE ++ G ++ + G +++YRG+NY +RP+
Sbjct: 389 FSQVLYTAKLLESESGGVLVSIDKLKEGHAIIIYRGKNY---RRPI 431
>gi|5123569|emb|CAB45335.1| putative protein [Arabidopsis thaliana]
gi|7269874|emb|CAB79733.1| putative protein [Arabidopsis thaliana]
Length = 776
Score = 46.6 bits (109), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 4/72 (5%)
Query: 192 LGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKII----FRHG 247
LGR + + ++H HWKH E V++ G +K++ LE ++ G ++ G
Sbjct: 626 LGRREVYDGTIENMHLHWKHRELVKVIVRGKSLPQVKHIAISLEAESGGVLVSVDKTMKG 685
Query: 248 GTLVLYRGRNYN 259
++LYRG+NY
Sbjct: 686 YAIILYRGKNYQ 697
>gi|242078893|ref|XP_002444215.1| hypothetical protein SORBIDRAFT_07g015120 [Sorghum bicolor]
gi|241940565|gb|EES13710.1| hypothetical protein SORBIDRAFT_07g015120 [Sorghum bicolor]
Length = 728
Score = 46.2 bits (108), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 48/98 (48%), Gaps = 10/98 (10%)
Query: 171 NAERKALVE--KCHRNRTKRQIN----LGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPT 224
+A+R+ L E K R R+++ LGR G+ ++ +IH HWKH E V++
Sbjct: 571 SADRELLTEEEKIMFRRIGRKMDGLVLLGRRGIFDGVIEEIHQHWKHKEVVKVITKQNQA 630
Query: 225 VDMKNVCFQLEDKTFGKII----FRHGGTLVLYRGRNY 258
+ LE +T G +I ++LYRG+NY
Sbjct: 631 RQIMYTANLLEVETGGILIAVEKLTTSHAIILYRGKNY 668
>gi|357473479|ref|XP_003607024.1| CRS1 / YhbY domain containing protein [Medicago truncatula]
gi|355508079|gb|AES89221.1| CRS1 / YhbY domain containing protein [Medicago truncatula]
Length = 285
Score = 45.8 bits (107), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 58/120 (48%), Gaps = 6/120 (5%)
Query: 138 DPKVKSAEEGAEDPNLEEKRILVRERIQGE--PLTNAERKALVEKCHRNRTKRQINL-GR 194
D KV E G L KR ER++ E L+ ERK L H K L G+
Sbjct: 115 DTKVVVDEIGTTSSPLVSKR---EERLKLEVPSLSVKERKELGSYAHSLGKKLSTQLVGK 171
Query: 195 DGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIFRHGGTLVLYR 254
G+T N++ ++ + E ++IK G ++++V QLE+ T + + G TL+LYR
Sbjct: 172 SGVTPNLVTAFSDNLEANELLKIKIHGSCPGELEDVVKQLEESTGSVTVGQIGRTLILYR 231
>gi|297807647|ref|XP_002871707.1| ATCRS1/CRS1 [Arabidopsis lyrata subsp. lyrata]
gi|297317544|gb|EFH47966.1| ATCRS1/CRS1 [Arabidopsis lyrata subsp. lyrata]
Length = 727
Score = 45.4 bits (106), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 7/82 (8%)
Query: 192 LGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKII----FRHG 247
LGR G+ ++ +H HWKH E ++ + + LE ++ G +I + G
Sbjct: 600 LGRRGVFVGIMEGLHQHWKHREVAKVITMQKIFSRVVYTAKSLEAESNGVLISIEKLKEG 659
Query: 248 GTLVLYRGRNYNPKKRPVIPLM 269
+++YRG+NY KRP LM
Sbjct: 660 HAILIYRGKNY---KRPSSKLM 678
>gi|9279724|dbj|BAB01314.1| unnamed protein product [Arabidopsis thaliana]
Length = 1115
Score = 45.4 bits (106), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Query: 185 RTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIF 244
+ K + +GR G+ ++ ++H HWK + +++ ++K + +L T G ++
Sbjct: 862 KCKNYVPVGRRGIYQGVILNMHLHWKKHQTLQVVIKTFTPDEVKEIAVELARLTGGIVLD 921
Query: 245 RH-GGTLVLYRGRNY 258
H G T+++YRG+NY
Sbjct: 922 VHEGNTIIMYRGKNY 936
>gi|449490080|ref|XP_004158502.1| PREDICTED: LOW QUALITY PROTEIN: chloroplastic group IIA intron
splicing facilitator CRS1, chloroplastic-like [Cucumis
sativus]
Length = 760
Score = 45.4 bits (106), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 51/106 (48%), Gaps = 15/106 (14%)
Query: 167 EPLTNAERKALVEKCHRNRTKRQ---INLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVP 223
E +TN ER C R + + LGR G+ ++ +H HWKH E V++ +
Sbjct: 611 ELITNEERI-----CFRKMGLKMDSCLTLGRRGVFDGVIEGLHQHWKHREVVKVITMQRA 665
Query: 224 TVDMKNVCFQLEDKTFGKII----FRHGGTLVLYRGRNYNPKKRPV 265
+ LE ++ G ++ + G ++++RG+NY KRP+
Sbjct: 666 FNQVNYTAKLLEAESGGILVSVDKLKEGYAIIIFRGKNY---KRPL 708
Score = 39.7 bits (91), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 57/106 (53%), Gaps = 7/106 (6%)
Query: 159 LVRERIQGEPLTNAE---RKALVE--KCHRNRTKRQINLGRDGLTHNMLNDIHNHWKHAE 213
+V R++ + +T+AE + L+E K ++ ++ + + + G+T +++N I W+ E
Sbjct: 172 IVLRRMKKKTVTSAELNLDRVLLERLKGEASKMEKWVKVNKVGVTQDVVNQIQFMWERNE 231
Query: 214 AVRIKCLGVP-TVDMKNVCFQLEDKTFGKIIFRHGGTLVLYRGRNY 258
+K VP + +M +E KT G +++ LV+YRG NY
Sbjct: 232 LAMLK-FDVPLSRNMDRAREIVEMKTGGMVVWSKKNALVIYRGCNY 276
>gi|449441730|ref|XP_004138635.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Cucumis sativus]
Length = 760
Score = 45.4 bits (106), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 51/106 (48%), Gaps = 15/106 (14%)
Query: 167 EPLTNAERKALVEKCHRNRTKRQ---INLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVP 223
E +TN ER C R + + LGR G+ ++ +H HWKH E V++ +
Sbjct: 611 ELITNEERI-----CFRKMGLKMDSCLTLGRRGVFDGVIEGLHQHWKHREVVKVITMQRA 665
Query: 224 TVDMKNVCFQLEDKTFGKII----FRHGGTLVLYRGRNYNPKKRPV 265
+ LE ++ G ++ + G ++++RG+NY KRP+
Sbjct: 666 FNQVNYTAKLLEAESGGILVSVDKLKEGYAIIIFRGKNY---KRPL 708
Score = 39.7 bits (91), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 57/106 (53%), Gaps = 7/106 (6%)
Query: 159 LVRERIQGEPLTNAE---RKALVE--KCHRNRTKRQINLGRDGLTHNMLNDIHNHWKHAE 213
+V R++ + +T+AE + L+E K ++ ++ + + + G+T +++N I W+ E
Sbjct: 172 IVLRRMKKKTVTSAELNLDRVLLERLKGEASKMEKWVKVNKVGVTQDVVNQIQFMWERNE 231
Query: 214 AVRIKCLGVP-TVDMKNVCFQLEDKTFGKIIFRHGGTLVLYRGRNY 258
+K VP + +M +E KT G +++ LV+YRG NY
Sbjct: 232 LAMLK-FDVPLSRNMDRAREIVEMKTGGMVVWSKKNALVVYRGCNY 276
>gi|79417439|ref|NP_189171.2| uncharacterized CRM domain-containing protein [Arabidopsis
thaliana]
gi|75116513|sp|Q67XL4.1|Y3544_ARATH RecName: Full=Uncharacterized CRM domain-containing protein
At3g25440, chloroplastic; Flags: Precursor
gi|51971805|dbj|BAD44567.1| unknown protein [Arabidopsis thaliana]
gi|332643490|gb|AEE77011.1| uncharacterized CRM domain-containing protein [Arabidopsis
thaliana]
Length = 444
Score = 45.1 bits (105), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Query: 185 RTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIF 244
+ K + +GR G+ ++ ++H HWK + +++ ++K + +L T G ++
Sbjct: 191 KCKNYVPVGRRGIYQGVILNMHLHWKKHQTLQVVIKTFTPDEVKEIAVELARLTGGIVLD 250
Query: 245 RH-GGTLVLYRGRNY 258
H G T+++YRG+NY
Sbjct: 251 VHEGNTIIMYRGKNY 265
>gi|145332683|ref|NP_001078207.1| uncharacterized CRM domain-containing protein [Arabidopsis
thaliana]
gi|332643491|gb|AEE77012.1| uncharacterized CRM domain-containing protein [Arabidopsis
thaliana]
Length = 380
Score = 44.7 bits (104), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Query: 185 RTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIF 244
+ K + +GR G+ ++ ++H HWK + +++ ++K + +L T G ++
Sbjct: 127 KCKNYVPVGRRGIYQGVILNMHLHWKKHQTLQVVIKTFTPDEVKEIAVELARLTGGIVLD 186
Query: 245 RH-GGTLVLYRGRNY 258
H G T+++YRG+NY
Sbjct: 187 VHEGNTIIMYRGKNY 201
>gi|115459160|ref|NP_001053180.1| Os04g0492900 [Oryza sativa Japonica Group]
gi|21740788|emb|CAD41533.1| OSJNBb0091E11.2 [Oryza sativa Japonica Group]
gi|38346227|emb|CAE02049.2| OJ990528_30.7 [Oryza sativa Japonica Group]
gi|90265163|emb|CAH67731.1| H0522A01.2 [Oryza sativa Indica Group]
gi|113564751|dbj|BAF15094.1| Os04g0492900 [Oryza sativa Japonica Group]
gi|116310744|emb|CAH67539.1| H0425E08.7 [Oryza sativa Indica Group]
gi|125548841|gb|EAY94663.1| hypothetical protein OsI_16441 [Oryza sativa Indica Group]
Length = 479
Score = 44.7 bits (104), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 184 NRTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKII 243
++K + +GR G+ ++ ++H HWK + +++ ++K + +L + G ++
Sbjct: 192 QKSKNYVPVGRRGIYQGVILNMHLHWKKHQTLQVIVKTFTPDEVKEIASELARLSGGIVL 251
Query: 244 -FRHGGTLVLYRGRNY 258
+ G T+++YRG+NY
Sbjct: 252 DIQEGNTIIMYRGKNY 267
>gi|125590852|gb|EAZ31202.1| hypothetical protein OsJ_15301 [Oryza sativa Japonica Group]
Length = 484
Score = 44.7 bits (104), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 184 NRTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKII 243
++K + +GR G+ ++ ++H HWK + +++ ++K + +L + G ++
Sbjct: 192 QKSKNYVPVGRRGIYQGVILNMHLHWKKHQTLQVIVKTFTPDEVKEIASELARLSGGIVL 251
Query: 244 -FRHGGTLVLYRGRNY 258
+ G T+++YRG+NY
Sbjct: 252 DIQEGNTIIMYRGKNY 267
>gi|212723506|ref|NP_001132081.1| uncharacterized protein LOC100193495 [Zea mays]
gi|194693368|gb|ACF80768.1| unknown [Zea mays]
gi|414586598|tpg|DAA37169.1| TPA: hypothetical protein ZEAMMB73_229116 [Zea mays]
gi|414586599|tpg|DAA37170.1| TPA: hypothetical protein ZEAMMB73_229116 [Zea mays]
Length = 485
Score = 44.7 bits (104), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 184 NRTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKII 243
+ K + +GR G+ ++ ++H HWK + +++ ++K + +L + G ++
Sbjct: 199 QKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLQVIVKTFTPEEVKEIAIELATLSGGIVL 258
Query: 244 -FRHGGTLVLYRGRNY 258
+ G T+++YRG+NY
Sbjct: 259 DIQDGNTIIMYRGKNY 274
>gi|357488365|ref|XP_003614470.1| CRS2-associated factor [Medicago truncatula]
gi|355515805|gb|AES97428.1| CRS2-associated factor [Medicago truncatula]
Length = 248
Score = 44.3 bits (103), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Query: 311 AKNGYYGSLVPMVRDAFLVSELVRIDCQGLERSDYKKIGCKLR---SWFR 357
KNG Y LV DAF S V+IDC+GL+ DYKK+G K + W R
Sbjct: 119 VKNGVYIMLVKDAGDAFGRSRFVKIDCKGLDPGDYKKLGSKHKVCACWLR 168
>gi|238007578|gb|ACR34824.1| unknown [Zea mays]
gi|414586597|tpg|DAA37168.1| TPA: hypothetical protein ZEAMMB73_229116 [Zea mays]
Length = 342
Score = 44.3 bits (103), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 184 NRTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKII 243
+ K + +GR G+ ++ ++H HWK + +++ ++K + +L + G ++
Sbjct: 56 QKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLQVIVKTFTPEEVKEIAIELATLSGGIVL 115
Query: 244 -FRHGGTLVLYRGRNY 258
+ G T+++YRG+NY
Sbjct: 116 DIQDGNTIIMYRGKNY 131
>gi|413918581|gb|AFW58513.1| hypothetical protein ZEAMMB73_947708, partial [Zea mays]
Length = 208
Score = 44.3 bits (103), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 33/51 (64%)
Query: 185 RTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLE 235
R ++++ +G+ G+T ++N IH W++AE V+++C V ++M+ LE
Sbjct: 157 RVRKRLKVGKAGITEGIVNGIHERWRNAEVVKLRCEDVWAMNMRRTHEILE 207
>gi|357167884|ref|XP_003581379.1| PREDICTED: uncharacterized CRM domain-containing protein At3g25440,
chloroplastic-like [Brachypodium distachyon]
Length = 485
Score = 44.3 bits (103), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 184 NRTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKII 243
++K + +GR G+ ++ ++H HWK + +++ ++K + +L + G ++
Sbjct: 199 QKSKNYVPVGRRGIYQGVILNMHLHWKKHQTLQVIVKTFTPEEVKEIASELAILSGGIVL 258
Query: 244 -FRHGGTLVLYRGRNY 258
+ G T+++YRG+NY
Sbjct: 259 SIQEGNTIIMYRGKNY 274
>gi|147838476|emb|CAN69859.1| hypothetical protein VITISV_037991 [Vitis vinifera]
Length = 371
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 40/78 (51%), Gaps = 7/78 (8%)
Query: 192 LGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKII----FRHG 247
GR G+ ++ +H HWKH E V++ + + LE ++ G ++ + G
Sbjct: 118 FGRRGVFDGVIEGLHQHWKHREIVKVITMQRSFSQVLYTAKLLESESGGVLVSIDKLKEG 177
Query: 248 GTLVLYRGRNYNPKKRPV 265
+++YRG+NY +RP+
Sbjct: 178 HAIIIYRGKNY---RRPI 192
>gi|302759655|ref|XP_002963250.1| hypothetical protein SELMODRAFT_404989 [Selaginella moellendorffii]
gi|300168518|gb|EFJ35121.1| hypothetical protein SELMODRAFT_404989 [Selaginella moellendorffii]
Length = 274
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 42/77 (54%), Gaps = 2/77 (2%)
Query: 190 INLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIFRHGGT 249
+ +G+ G+ + DI++HW + E +RI C G P ++ + ++ + +I T
Sbjct: 119 LTIGKRGVWEGFIRDIYSHWINHETLRIYCEGYPLRKLRPMAEKVARMSGAVVIAVTEET 178
Query: 250 L--VLYRGRNYNPKKRP 264
+ +LYRGRN++ +P
Sbjct: 179 MSFILYRGRNFSHGYQP 195
>gi|125550822|gb|EAY96531.1| hypothetical protein OsI_18436 [Oryza sativa Indica Group]
Length = 560
Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 55/103 (53%), Gaps = 5/103 (4%)
Query: 204 DIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIFRHGG-TLVLYRGRNYNPKK 262
++H HWK E V++ C P +K + L + G +I H T++++RGRNY K
Sbjct: 177 NMHMHWKFHETVQVCCDNFPKEKIKEMAAMLTRLSGGIVINIHNTKTIIMFRGRNYRQPK 236
Query: 263 RPVIPLMLWRPHEPVYPKLIKTTIEG--LSIEETK-EMRKRGL 302
+IPL + ++ + +E L+I++ + ++R++G+
Sbjct: 237 N-LIPLNTLTKRKALFKARFEQALESQKLNIKKIETQLRRKGI 278
>gi|51038196|gb|AAT93999.1| unknow protein [Oryza sativa Japonica Group]
gi|222630175|gb|EEE62307.1| hypothetical protein OsJ_17096 [Oryza sativa Japonica Group]
Length = 560
Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 55/103 (53%), Gaps = 5/103 (4%)
Query: 204 DIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIFRHGG-TLVLYRGRNYNPKK 262
++H HWK E V++ C P +K + L + G +I H T++++RGRNY K
Sbjct: 177 NMHMHWKFHETVQVCCDNFPKEKIKEMAAMLTRLSGGIVINIHNTKTIIMFRGRNYRQPK 236
Query: 263 RPVIPLMLWRPHEPVYPKLIKTTIEG--LSIEETK-EMRKRGL 302
+IPL + ++ + +E L+I++ + ++R++G+
Sbjct: 237 N-LIPLNTLTKRKALFKARFEQALESQKLNIKKIETQLRRKGI 278
>gi|255572670|ref|XP_002527268.1| conserved hypothetical protein [Ricinus communis]
gi|223533361|gb|EEF35112.1| conserved hypothetical protein [Ricinus communis]
Length = 458
Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 185 RTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIF 244
+ K + +GR G+ ++ ++H HWK + V++ ++K + +L T G ++
Sbjct: 185 KCKNYVPVGRRGIYQGVILNMHLHWKKHQTVQVVVKTFSPEEVKEIAAELARLTGGIVLD 244
Query: 245 RH-GGTLVLYRGRNYN 259
H T+++YRG+NY+
Sbjct: 245 IHEENTIIMYRGKNYS 260
>gi|357439975|ref|XP_003590265.1| CRM domain-containing protein, putative [Medicago truncatula]
gi|355479313|gb|AES60516.1| CRM domain-containing protein, putative [Medicago truncatula]
Length = 443
Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 185 RTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIF 244
++K + +GR G+ ++ ++H HWK + +++ ++K + +L T G ++
Sbjct: 172 KSKNYVPVGRRGIYQGVILNMHLHWKKHQTLQVVVKTFSAEEVKEIATELARLTGGIVLG 231
Query: 245 RH-GGTLVLYRGRNYN 259
H T+++YRG+NY+
Sbjct: 232 IHEEDTIIMYRGKNYS 247
>gi|297831446|ref|XP_002883605.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297329445|gb|EFH59864.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 1055
Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 185 RTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIF 244
+ K + +GR G+ ++ ++H HWK + +++ ++ + +L T G ++
Sbjct: 805 KCKNYVPVGRRGIYQGVILNMHLHWKKHQTLQVVIKTFTPDEVNEIAVELARLTGGIVLD 864
Query: 245 RH-GGTLVLYRGRNY 258
H G T+++YRG+NY
Sbjct: 865 VHEGNTIIMYRGKNY 879
>gi|357439925|ref|XP_003590240.1| CRM domain-containing protein, putative [Medicago truncatula]
gi|355479288|gb|AES60491.1| CRM domain-containing protein, putative [Medicago truncatula]
Length = 472
Score = 43.5 bits (101), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 185 RTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIF 244
++K + +GR G+ ++ ++H HWK + +++ ++K + +L T G ++
Sbjct: 172 KSKNYVPVGRRGIYQGVILNMHLHWKKHQTLQVVVKTFSAEEVKEIATELARLTGGIVLG 231
Query: 245 RH-GGTLVLYRGRNYN 259
H T+++YRG+NY+
Sbjct: 232 IHEEDTIIMYRGKNYS 247
>gi|125590660|gb|EAZ31010.1| hypothetical protein OsJ_15093 [Oryza sativa Japonica Group]
Length = 818
Score = 43.5 bits (101), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 48/206 (23%), Positives = 85/206 (41%), Gaps = 24/206 (11%)
Query: 59 NPTL-NPNKNFKKKSKPQYRPPSSLDAPKKKYTDLPFDFRYSYTETNQNVRPIGL-REPK 116
N T+ NP NF K S PQ + K TD+ D Y + +++ + R
Sbjct: 290 NSTISNPKLNFDK-STPQN------SSKLKMATDVSLDGHECYEKKHKDETAVSDNRAES 342
Query: 117 YSPFGPGRLEREWTGVCAPAADPKVKSAEEGAEDPNLEEKRILVRERIQGEPLTNAERKA 176
+ F R + K+ E + +P+ E R ++ E E +
Sbjct: 343 LNVFAQNVEARLSQAIAEKEKTEKLIEELEMSSEPSRAETREVISE----------EERY 392
Query: 177 LVEKCHRNRTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLED 236
++ K + K + LGR G+ + ++H HWK+ E V+I C D++ LE
Sbjct: 393 MLRKVGL-KMKSFLLLGRRGVFDGTVENMHLHWKYRELVKIICKEHNIKDVEYAARTLEA 451
Query: 237 KTFGKII----FRHGGTLVLYRGRNY 258
++ G ++ +++YRG+NY
Sbjct: 452 ESGGILVAVERVSKAHAIIIYRGKNY 477
>gi|167998334|ref|XP_001751873.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162696971|gb|EDQ83308.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 590
Score = 43.1 bits (100), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 51/100 (51%), Gaps = 8/100 (8%)
Query: 167 EPLTNAERKALVEKCHRNRTK---RQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVP 223
E +++ ER ++ R R + +++ GR G+ ++ ++H HWKH E V++ G P
Sbjct: 145 EQISDEERYMFMKLGLRMRARLLMGKLSSGRRGVFDGVVENMHLHWKHRELVKVIFKG-P 203
Query: 224 TVDMKNVCFQLEDKTFGKII----FRHGGTLVLYRGRNYN 259
+ + LE ++ G ++ G ++ YRG+NY
Sbjct: 204 IFEAEQTAKILEMESGGVLVGIVTTTKGQAIIFYRGKNYQ 243
>gi|297818350|ref|XP_002877058.1| hypothetical protein ARALYDRAFT_484545 [Arabidopsis lyrata subsp.
lyrata]
gi|297322896|gb|EFH53317.1| hypothetical protein ARALYDRAFT_484545 [Arabidopsis lyrata subsp.
lyrata]
Length = 488
Score = 43.1 bits (100), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 55/103 (53%), Gaps = 5/103 (4%)
Query: 204 DIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIFRHG-GTLVLYRGRNYNPKK 262
++H HWK E V++ C P +K + + + G +I H T++++RGRNY K
Sbjct: 125 NMHMHWKFHETVQVCCDNFPKEKIKEMASMIARLSGGVVINIHNVKTIIMFRGRNYRQPK 184
Query: 263 RPVIPLMLWRPHEPVYPKLIKTTIEG--LSIEET-KEMRKRGL 302
+IP+ + ++ + +E L+I++T +++R+ G+
Sbjct: 185 N-LIPVNTLTKRKALFKARFEQALESQKLNIKKTEQQLRRMGV 226
>gi|449458069|ref|XP_004146770.1| PREDICTED: uncharacterized CRM domain-containing protein At3g25440,
chloroplastic-like [Cucumis sativus]
gi|449516505|ref|XP_004165287.1| PREDICTED: uncharacterized CRM domain-containing protein At3g25440,
chloroplastic-like [Cucumis sativus]
Length = 500
Score = 43.1 bits (100), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 185 RTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIF 244
+ K + +GR G+ ++ ++H HWK + V++ ++K + +L T G ++
Sbjct: 225 KGKNYVPVGRRGIYQGVILNMHLHWKKHQTVKVVVKTFSPEEVKEIAAELARLTGGLVLD 284
Query: 245 RH-GGTLVLYRGRNYN 259
H T+++YRG+NY+
Sbjct: 285 IHEEDTIIMYRGKNYS 300
>gi|15232195|ref|NP_189392.1| RNA-binding CRS1 / YhbY (CRM) domain protein [Arabidopsis thaliana]
gi|11994182|dbj|BAB01285.1| unnamed protein product [Arabidopsis thaliana]
gi|332643815|gb|AEE77336.1| RNA-binding CRS1 / YhbY (CRM) domain protein [Arabidopsis thaliana]
Length = 491
Score = 43.1 bits (100), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 55/103 (53%), Gaps = 5/103 (4%)
Query: 204 DIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIFRHG-GTLVLYRGRNYNPKK 262
++H HWK E V++ C P +K + + + G +I H T++++RGRNY K
Sbjct: 125 NMHMHWKFHETVQVCCDNFPKEKIKEMASMIARLSGGVVINIHNVKTIIMFRGRNYRQPK 184
Query: 263 RPVIPLMLWRPHEPVYPKLIKTTIEG--LSIEET-KEMRKRGL 302
+IP+ + ++ + +E L+I++T +++R+ G+
Sbjct: 185 N-LIPVNTLTKRKALFKARFEQALESQKLNIKKTEQQLRRMGV 226
>gi|242073570|ref|XP_002446721.1| hypothetical protein SORBIDRAFT_06g021160 [Sorghum bicolor]
gi|241937904|gb|EES11049.1| hypothetical protein SORBIDRAFT_06g021160 [Sorghum bicolor]
Length = 484
Score = 42.7 bits (99), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 184 NRTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKII 243
+ K + +GR G+ ++ ++H HWK + +++ ++K + +L + G ++
Sbjct: 198 QKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLQVIVKTFTPEEVKEIATELARLSGGIVL 257
Query: 244 -FRHGGTLVLYRGRNY 258
+ G T+++YRG+NY
Sbjct: 258 DIQDGNTIIMYRGKNY 273
>gi|225448146|ref|XP_002263852.1| PREDICTED: uncharacterized CRM domain-containing protein At3g25440,
chloroplastic-like [Vitis vinifera]
Length = 401
Score = 42.7 bits (99), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 185 RTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIF 244
+ K + +GR G+ ++ ++H HWK + +++ ++K + +L T G ++
Sbjct: 127 KCKNYVPIGRRGIYQGVILNMHLHWKKHQTLQVVVKTFSPEEVKEIAVELARLTGGIVLD 186
Query: 245 RH-GGTLVLYRGRNYN 259
H T+++YRG+NY+
Sbjct: 187 IHEENTIIMYRGKNYS 202
>gi|224055583|ref|XP_002298551.1| predicted protein [Populus trichocarpa]
gi|222845809|gb|EEE83356.1| predicted protein [Populus trichocarpa]
Length = 496
Score = 42.7 bits (99), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 54/103 (52%), Gaps = 5/103 (4%)
Query: 204 DIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIFRHG-GTLVLYRGRNYNPKK 262
++H HWK E V++ C P +K + + + G ++ H T++++RGRNY K
Sbjct: 114 NMHMHWKFHETVQVSCDNFPKEKIKEMATMIARLSGGIVVNVHNVKTIIMFRGRNYRQPK 173
Query: 263 RPVIPLMLWRPHEPVYPKLIKTTIEG--LSIEET-KEMRKRGL 302
+IPL + ++ + +E L+I++ +++R+ G+
Sbjct: 174 -DLIPLNTLTKRKALFKARFEQALESQKLNIKQIEQQLRRMGV 215
>gi|356501797|ref|XP_003519710.1| PREDICTED: uncharacterized CRM domain-containing protein At3g25440,
chloroplastic-like [Glycine max]
Length = 382
Score = 42.7 bits (99), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 185 RTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIF 244
++K + +GR G+ ++ ++H HWK + +++ ++K + +L + G ++
Sbjct: 132 KSKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVVVKTFSAEEVKEIATELARLSGGIVLD 191
Query: 245 RH-GGTLVLYRGRNYN 259
H T+++YRG+NY+
Sbjct: 192 IHEDNTIIMYRGKNYS 207
>gi|297739537|emb|CBI29719.3| unnamed protein product [Vitis vinifera]
Length = 331
Score = 42.7 bits (99), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Query: 192 LGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIFRH-GGTL 250
+GR G+ ++ ++H HWK + +++ ++K + +L T G ++ H T+
Sbjct: 64 IGRRGIYQGVILNMHLHWKKHQTLQVVVKTFSPEEVKEIAVELARLTGGIVLDIHEENTI 123
Query: 251 VLYRGRNYN 259
++YRG+NY+
Sbjct: 124 IMYRGKNYS 132
>gi|356498434|ref|XP_003518057.1| PREDICTED: uncharacterized CRM domain-containing protein At3g25440,
chloroplastic-like, partial [Glycine max]
Length = 383
Score = 42.7 bits (99), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 185 RTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIF 244
++K + +GR G+ ++ ++H HWK + +++ ++K + +L + G ++
Sbjct: 112 KSKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVVVKTFSAEEVKEIAAELARLSGGIVLD 171
Query: 245 RH-GGTLVLYRGRNYN 259
H T+++YRG+NY+
Sbjct: 172 IHEDNTIIMYRGKNYS 187
>gi|413917671|gb|AFW57603.1| hypothetical protein ZEAMMB73_144408 [Zea mays]
Length = 520
Score = 42.4 bits (98), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 54/103 (52%), Gaps = 5/103 (4%)
Query: 204 DIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIFRHGG-TLVLYRGRNYNPKK 262
++H HWK E V++ C P +K + L + G +I H T++++RGRNY K
Sbjct: 169 NMHMHWKFHETVQVCCDNFPKEKIKEMAAMLTRLSGGIVINIHNTKTIIMFRGRNYRQPK 228
Query: 263 RPVIPLMLWRPHEPVYPKLIKTTIEG--LSIEETK-EMRKRGL 302
+IP + ++ + +E L+I++ + ++R++G+
Sbjct: 229 N-LIPFNTLTKRKALFKARFEQALESQKLNIKKIETQLRRKGI 270
>gi|218194999|gb|EEC77426.1| hypothetical protein OsI_16218 [Oryza sativa Indica Group]
Length = 818
Score = 42.4 bits (98), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 48/206 (23%), Positives = 85/206 (41%), Gaps = 24/206 (11%)
Query: 59 NPTL-NPNKNFKKKSKPQYRPPSSLDAPKKKYTDLPFDFRYSYTETNQNVRPIGL-REPK 116
N T+ NP NF K S PQ + K TD+ D Y + +++ + R
Sbjct: 290 NSTISNPKLNFDK-STPQN------SSKLKMATDVSLDGHECYEKKHKDETAVSDNRAES 342
Query: 117 YSPFGPGRLEREWTGVCAPAADPKVKSAEEGAEDPNLEEKRILVRERIQGEPLTNAERKA 176
+ F R + K+ E + +P+ E R ++ E E +
Sbjct: 343 LNVFTQNVEARLSQAIAEKEKTEKLIEELEMSSEPSRAETREVISE----------EERY 392
Query: 177 LVEKCHRNRTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLED 236
++ K + K + LGR G+ + ++H HWK+ E V+I C D++ LE
Sbjct: 393 MLRKVGL-KMKSFLLLGRRGVFDGTVENMHLHWKYRELVKIICKEHNIKDVEYAARTLEA 451
Query: 237 KTFGKII----FRHGGTLVLYRGRNY 258
++ G ++ +++YRG+NY
Sbjct: 452 ESGGILVAVERVSKAHAIIIYRGKNY 477
>gi|320528084|ref|ZP_08029249.1| conserved hypothetical protein TIGR00253 [Solobacterium moorei
F0204]
gi|320131432|gb|EFW23997.1| conserved hypothetical protein TIGR00253 [Solobacterium moorei
F0204]
Length = 96
Score = 42.4 bits (98), Expect = 0.33, Method: Composition-based stats.
Identities = 24/78 (30%), Positives = 45/78 (57%), Gaps = 2/78 (2%)
Query: 185 RTKRQI-NLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKII 243
+T+R I +G+DGL+ N++ ++N + E ++I L T D+K + F L T +++
Sbjct: 16 QTERAIFQIGKDGLSDNLVETVNNGLRTRELIKISVLKTVTTDLKELAFDLSMHTKSELV 75
Query: 244 FRHGGTLVLYRGRNYNPK 261
G +VLY+ + +PK
Sbjct: 76 QVIGRQIVLYK-KAKDPK 92
>gi|388504790|gb|AFK40461.1| unknown [Medicago truncatula]
Length = 190
Score = 42.4 bits (98), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 39/69 (56%)
Query: 187 KRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIFRH 246
K++I++ + GLT ++L IH+ W E V++K +M ++ +T G +I+R
Sbjct: 122 KQKISIPKSGLTRSVLQRIHHQWNTNELVKLKFHQQLVQNMNLAHNIVQRRTGGLVIWRS 181
Query: 247 GGTLVLYRG 255
G + +YRG
Sbjct: 182 GSVMWVYRG 190
>gi|356511313|ref|XP_003524371.1| PREDICTED: uncharacterized CRM domain-containing protein At3g25440,
chloroplastic-like [Glycine max]
Length = 282
Score = 42.0 bits (97), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 46/93 (49%), Gaps = 3/93 (3%)
Query: 167 EPLTNAERKALVEKCHRNRTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVD 226
E LT ER L K R K + +GR G+ ++ ++H HWK+ E V++ C
Sbjct: 123 EILTEEERHYL--KRTGERKKHYVPVGRRGVFGGVVLNMHLHWKNHETVKVICKPCKPGQ 180
Query: 227 MKNVCFQLEDKTFGKII-FRHGGTLVLYRGRNY 258
+ +L + G +I + T++ YRG+NY
Sbjct: 181 VHEYAEELARLSKGIVIDIKPNNTIIFYRGKNY 213
>gi|413950005|gb|AFW82654.1| hypothetical protein ZEAMMB73_283519 [Zea mays]
Length = 645
Score = 42.0 bits (97), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 54/103 (52%), Gaps = 5/103 (4%)
Query: 204 DIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIFRHGG-TLVLYRGRNYNPKK 262
++H HWK E V++ C P +K + L + G +I H T++++RGRNY K
Sbjct: 166 NMHMHWKFHETVQVCCDNFPKEKIKEMAAMLTRLSGGIVINIHNTKTIIMFRGRNYRQPK 225
Query: 263 RPVIPLMLWRPHEPVYPKLIKTTIEG--LSIEETK-EMRKRGL 302
+IP + ++ + +E L+I++ + ++R++G+
Sbjct: 226 -NLIPFNTLTKRKALFKARFEQALESQKLNIKKIETQLRRKGI 267
>gi|449450187|ref|XP_004142845.1| PREDICTED: uncharacterized protein LOC101215761 [Cucumis sativus]
Length = 619
Score = 41.6 bits (96), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 55/103 (53%), Gaps = 5/103 (4%)
Query: 204 DIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIFRHG-GTLVLYRGRNYNPKK 262
++H HWK E V++ C P +K + L + G ++ H T++++RGRNY K
Sbjct: 182 NMHLHWKFHETVQVCCDNFPKEKIKEMATMLARLSGGIVVNIHDVKTIIMFRGRNYRQPK 241
Query: 263 RPVIPLMLWRPHEPVYPKLIKTTIEG--LSIEE-TKEMRKRGL 302
+IP+ + ++ + ++ L+I++ +E+R++G+
Sbjct: 242 N-LIPINTLTKRKALFKARFEQALDSQKLNIKKIEQELRRKGI 283
>gi|449483922|ref|XP_004156733.1| PREDICTED: uncharacterized protein LOC101226279 [Cucumis sativus]
Length = 619
Score = 41.6 bits (96), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 55/103 (53%), Gaps = 5/103 (4%)
Query: 204 DIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIFRHG-GTLVLYRGRNYNPKK 262
++H HWK E V++ C P +K + L + G ++ H T++++RGRNY K
Sbjct: 182 NMHLHWKFHETVQVCCDNFPKEKIKEMATMLARLSGGIVVNIHDVKTIIMFRGRNYRQPK 241
Query: 263 RPVIPLMLWRPHEPVYPKLIKTTIEG--LSIEE-TKEMRKRGL 302
+IP+ + ++ + ++ L+I++ +E+R++G+
Sbjct: 242 N-LIPINTLTKRKALFKARFEQALDSQKLNIKKIEQELRRKGI 283
>gi|242086871|ref|XP_002439268.1| hypothetical protein SORBIDRAFT_09g003490 [Sorghum bicolor]
gi|241944553|gb|EES17698.1| hypothetical protein SORBIDRAFT_09g003490 [Sorghum bicolor]
Length = 652
Score = 41.6 bits (96), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 54/103 (52%), Gaps = 5/103 (4%)
Query: 204 DIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIFRHGG-TLVLYRGRNYNPKK 262
++H HWK E V++ C P +K + L + G +I H T++++RGRNY K
Sbjct: 167 NMHMHWKFHETVQVCCDNFPKEKIKEMAAMLTRLSGGIVINIHNTKTIIMFRGRNYRQPK 226
Query: 263 RPVIPLMLWRPHEPVYPKLIKTTIEG--LSIEETK-EMRKRGL 302
+IP + ++ + +E L+I++ + ++R++G+
Sbjct: 227 -NLIPFNTLTKRKALFKARFEQALESQKLNIKKIETQLRRKGI 268
>gi|115467732|ref|NP_001057465.1| Os06g0304500 [Oryza sativa Japonica Group]
gi|113595505|dbj|BAF19379.1| Os06g0304500 [Oryza sativa Japonica Group]
gi|125596971|gb|EAZ36751.1| hypothetical protein OsJ_21087 [Oryza sativa Japonica Group]
Length = 348
Score = 41.6 bits (96), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 47/97 (48%), Gaps = 5/97 (5%)
Query: 167 EPLTNAERKALVEKCHRNRT----KRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGV 222
EP+ + E EK + RT K + +GR G+ ++ ++H HWK E V++ C
Sbjct: 174 EPVHDPEILTEEEKFYLKRTGEKKKNYVPVGRRGVFGGVVLNMHLHWKKHETVKVICKPC 233
Query: 223 PTVDMKNVCFQLEDKTFGKII-FRHGGTLVLYRGRNY 258
+ +L + G +I + T++ YRG+NY
Sbjct: 234 RPGQVYEYAEELTRLSKGTVIDIKPNNTIIFYRGKNY 270
>gi|356513969|ref|XP_003525680.1| PREDICTED: uncharacterized protein LOC100780131 [Glycine max]
Length = 653
Score = 41.6 bits (96), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 54/103 (52%), Gaps = 5/103 (4%)
Query: 204 DIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIFRHG-GTLVLYRGRNYNPKK 262
++H HWK E V++ C P +K + L + G +I H T++++RGRNY K
Sbjct: 184 NMHLHWKFHETVQVCCDNFPKEKIKEMASMLARLSGGIVINVHNVKTIIMFRGRNYRQPK 243
Query: 263 RPVIPLMLWRPHEPVYPKLIKTTIEG--LSIEET-KEMRKRGL 302
+IP+ + ++ + +E L+I++ +++R+ G+
Sbjct: 244 N-LIPINTLTKRKALFKARFEQALESQKLNIKKIEQQLRRMGV 285
>gi|224132018|ref|XP_002321235.1| predicted protein [Populus trichocarpa]
gi|222862008|gb|EEE99550.1| predicted protein [Populus trichocarpa]
Length = 413
Score = 41.2 bits (95), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 185 RTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIF 244
+ K + +GR G+ ++ ++H HWK + +++ ++K + +L T G ++
Sbjct: 144 KCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVVVKTFTPEEVKEIAAELARFTGGIVLD 203
Query: 245 RH-GGTLVLYRGRNYN 259
H T+++YRG+NY+
Sbjct: 204 IHEENTIIMYRGKNYS 219
>gi|125555042|gb|EAZ00648.1| hypothetical protein OsI_22670 [Oryza sativa Indica Group]
Length = 304
Score = 41.2 bits (95), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 47/97 (48%), Gaps = 5/97 (5%)
Query: 167 EPLTNAERKALVEKCHRNRT----KRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGV 222
EP+ + E EK + RT K + +GR G+ ++ ++H HWK E V++ C
Sbjct: 150 EPVHDPEILTEEEKFYLKRTGEKKKNYVPVGRRGVFGGVVLNMHLHWKKHETVKVICKPC 209
Query: 223 PTVDMKNVCFQLEDKTFGKII-FRHGGTLVLYRGRNY 258
+ +L + G +I + T++ YRG+NY
Sbjct: 210 RPGQVYEYAEELTRLSKGTVIDIKPNNTIIFYRGKNY 246
>gi|296087592|emb|CBI34848.3| unnamed protein product [Vitis vinifera]
Length = 545
Score = 41.2 bits (95), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Query: 204 DIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIFRHG-GTLVLYRGRNYNPKK 262
++H HWK E V++ C P +K + L + G +I H T++++RGRNY K
Sbjct: 182 NMHLHWKFHETVQVCCDNFPKEKIKEMATMLARLSGGIVINVHDVKTIIMFRGRNYRQPK 241
Query: 263 RPVIPL 268
+IP+
Sbjct: 242 N-LIPI 246
>gi|356573355|ref|XP_003554827.1| PREDICTED: uncharacterized protein LOC100782246 [Glycine max]
Length = 653
Score = 41.2 bits (95), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 54/103 (52%), Gaps = 5/103 (4%)
Query: 204 DIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIFRHG-GTLVLYRGRNYNPKK 262
++H HWK E V++ C P +K + L + G +I H T++++RGRNY K
Sbjct: 184 NMHLHWKFHETVQVCCDNFPKEKIKEMASMLARLSGGIVINVHNVKTIIMFRGRNYRQPK 243
Query: 263 RPVIPLMLWRPHEPVYPKLIKTTIEG--LSIEET-KEMRKRGL 302
+IP+ + ++ + +E L+I++ +++R+ G+
Sbjct: 244 N-LIPINTLTKRKALFKARFEQALESQKLNIKKIEQQLRRMGV 285
>gi|308501885|ref|XP_003113127.1| CRE-GRL-11 protein [Caenorhabditis remanei]
gi|308265428|gb|EFP09381.1| CRE-GRL-11 protein [Caenorhabditis remanei]
Length = 154
Score = 41.2 bits (95), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 53/128 (41%), Gaps = 20/128 (15%)
Query: 26 SATAANTTNNSSKLYDHYSFKPPPSLSPKPENPNPTLNPNKNFKKKSKPQYRPPSSLDAP 85
+ T TNNSS++ D + PP S +NPN ++KP RP D
Sbjct: 23 NTTIEGNTNNSSRVRD---YIDPPYASSLIQNPNV----------RTKPLVRPRKDDDCS 69
Query: 86 KKKYTDLPFDFRYSYTET-----NQNVRPIGLREPKYSPFGPGR--LEREWTGVCAPAAD 138
+ + + R S + T Q++ G+ E K + R E W+ +CAP A
Sbjct: 70 DEILRKVMNEVRLSVSSTLEYSYFQHISDEGMTESKRAIHAAARRDFEGTWSVICAPCAF 129
Query: 139 PKVKSAEE 146
+ A+E
Sbjct: 130 SYLAHAQE 137
>gi|357521229|ref|XP_003630903.1| CRM domain-containing protein, putative [Medicago truncatula]
gi|355524925|gb|AET05379.1| CRM domain-containing protein, putative [Medicago truncatula]
Length = 318
Score = 41.2 bits (95), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 44/98 (44%), Gaps = 3/98 (3%)
Query: 162 ERIQGEPLTNAERKALVEKCHRNRTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLG 221
E E LT ER L K + K + +GR G+ ++ ++H HWK E V++ C
Sbjct: 180 ETFDPEILTEEERHYL--KRTGEKKKHYVPVGRRGVFGEVVLNMHLHWKKHETVKVICKP 237
Query: 222 VPTVDMKNVCFQLEDKTFGKII-FRHGGTLVLYRGRNY 258
+L + G +I + ++ YRGRNY
Sbjct: 238 CKPGQAHEYTEELTRPSKGIVIDIKPNNIIIFYRGRNY 275
>gi|242076260|ref|XP_002448066.1| hypothetical protein SORBIDRAFT_06g020410 [Sorghum bicolor]
gi|241939249|gb|EES12394.1| hypothetical protein SORBIDRAFT_06g020410 [Sorghum bicolor]
Length = 338
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 48/97 (49%), Gaps = 5/97 (5%)
Query: 167 EPLTNAERKALVEKCHRNRT----KRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGV 222
EP+ + E EK + RT K + +GR G+ ++ ++H HWK+ E V++ C
Sbjct: 163 EPVHDPEILTEEEKFYLKRTGEKKKNYVPVGRRGVFGGVVLNMHLHWKNHETVKVVCKPC 222
Query: 223 PTVDMKNVCFQLEDKTFGKII-FRHGGTLVLYRGRNY 258
+ +L + G II + T++ YRG+NY
Sbjct: 223 RPGQVYEYAEELTRLSKGTIIDIKPNNTIMFYRGKNY 259
>gi|255567361|ref|XP_002524660.1| conserved hypothetical protein [Ricinus communis]
gi|223536021|gb|EEF37679.1| conserved hypothetical protein [Ricinus communis]
Length = 260
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 3/93 (3%)
Query: 167 EPLTNAERKALVEKCHRNRTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVD 226
E LT E+ L K + K I +GR G+ ++ ++H HWK E V+I C
Sbjct: 104 EMLTEEEKHYL--KRTGEKKKNFILVGRRGVFGGVVLNMHLHWKKHETVKIICKPCKPGQ 161
Query: 227 MKNVCFQLEDKTFGKII-FRHGGTLVLYRGRNY 258
+ +L + G +I R +++ YRG+NY
Sbjct: 162 IHQYAEELARLSKGIVIDIRPNNSIIFYRGKNY 194
>gi|357134703|ref|XP_003568955.1| PREDICTED: uncharacterized protein LOC100832553 [Brachypodium
distachyon]
Length = 562
Score = 40.8 bits (94), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 54/103 (52%), Gaps = 5/103 (4%)
Query: 204 DIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIFRHGG-TLVLYRGRNYNPKK 262
++H HWK E V++ C P +K + L + G ++ H T++++RGRNY K
Sbjct: 181 NMHMHWKFHETVQVCCDNFPKEKIKEMAAMLTRLSGGIVVNIHNTKTIIMFRGRNYRQPK 240
Query: 263 RPVIPLMLWRPHEPVYPKLIKTTIEG--LSIEETK-EMRKRGL 302
+IP + ++ + +E L+I++ + ++R++G+
Sbjct: 241 N-LIPFNTLTKRKALFKARYEQALESQKLNIKKIETQLRRKGI 282
>gi|326525483|dbj|BAJ88788.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 340
Score = 40.8 bits (94), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 47/97 (48%), Gaps = 5/97 (5%)
Query: 167 EPLTNAERKALVEKCHRNRT----KRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGV 222
EP+ + E EK + RT K + +GR G+ ++ ++H HWK E +++ C
Sbjct: 165 EPVHDPEILTEEEKFYLKRTGEKKKNYVPVGRRGVFGGVVLNMHLHWKKHETMKVVCKPC 224
Query: 223 PTVDMKNVCFQLEDKTFGKII-FRHGGTLVLYRGRNY 258
+ +L + G +I + T++ YRG+NY
Sbjct: 225 RPGQVYEYAEELARLSKGTVIDIKPNNTIIFYRGKNY 261
>gi|255560940|ref|XP_002521483.1| conserved hypothetical protein [Ricinus communis]
gi|223539382|gb|EEF40973.1| conserved hypothetical protein [Ricinus communis]
Length = 745
Score = 40.8 bits (94), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 54/103 (52%), Gaps = 5/103 (4%)
Query: 204 DIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIFRHG-GTLVLYRGRNYNPKK 262
++H HWK E V++ C P +K + L + G +I H T++++RGRNY K
Sbjct: 185 NMHLHWKFHETVQVCCDNFPKEKIKEMATMLARLSGGIVINIHNVKTIIMFRGRNYRQPK 244
Query: 263 RPVIPLMLWRPHEPVYPKLIKTTIEG--LSIEET-KEMRKRGL 302
+IP+ + ++ + +E L+I++ +++R+ G+
Sbjct: 245 N-LIPINTLTKRKALFKARFEQALESQKLNIKKIEQQLRRMGV 286
>gi|359488800|ref|XP_002272412.2| PREDICTED: uncharacterized protein LOC100254349 [Vitis vinifera]
Length = 666
Score = 40.4 bits (93), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 205 IHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIFRHG-GTLVLYRGRNYNPKKR 263
+H HWK E V++ C P +K + L + G +I H T++++RGRNY K
Sbjct: 168 MHLHWKFHETVQVCCDNFPKEKIKEMATMLARLSGGIVINVHDVKTIIMFRGRNYRQPKN 227
Query: 264 PVIPL 268
+IP+
Sbjct: 228 -LIPI 231
>gi|225427732|ref|XP_002265886.1| PREDICTED: uncharacterized protein LOC100243481 [Vitis vinifera]
gi|297744749|emb|CBI38011.3| unnamed protein product [Vitis vinifera]
Length = 287
Score = 40.4 bits (93), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 56/114 (49%), Gaps = 1/114 (0%)
Query: 142 KSAEEGAEDPNLEEKRILVRERIQGEPLTNAERKALVEKCHRNRTKRQINL-GRDGLTHN 200
+S E A+ L E V+E + LT E+K L H K + L G+ G+T +
Sbjct: 118 ESGGEIAKQEELYESEETVKETSRPVNLTIKEKKELASYAHSLGKKLKCQLVGKQGVTAS 177
Query: 201 MLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIFRHGGTLVLYR 254
+ + + + E ++IK G ++ +V QLE+ T ++ + G +++LYR
Sbjct: 178 VASAFIENLESNELLKIKIHGTCPGELPDVVKQLEESTGSVVVGQIGRSVILYR 231
>gi|356524301|ref|XP_003530768.1| PREDICTED: uncharacterized CRM domain-containing protein At3g25440,
chloroplastic-like [Glycine max]
Length = 282
Score = 40.4 bits (93), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 46/93 (49%), Gaps = 3/93 (3%)
Query: 167 EPLTNAERKALVEKCHRNRTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVD 226
E LT ER L K + K + +GR G+ ++ ++H HWK+ E V++ C
Sbjct: 123 EILTEEERHYL--KRTGEKKKHYVPVGRRGVFGGVVLNMHLHWKNHETVKVICKPCKPGQ 180
Query: 227 MKNVCFQLEDKTFGKII-FRHGGTLVLYRGRNY 258
+ +L + G +I + T++ YRG+NY
Sbjct: 181 VHEYAEELARLSKGIVIDIKPNNTIIFYRGKNY 213
>gi|357454755|ref|XP_003597658.1| Chloroplastic group IIA intron splicing facilitator CRS1 [Medicago
truncatula]
gi|355486706|gb|AES67909.1| Chloroplastic group IIA intron splicing facilitator CRS1 [Medicago
truncatula]
Length = 880
Score = 40.4 bits (93), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 53/112 (47%), Gaps = 14/112 (12%)
Query: 162 ERIQGEPLTNAERKALVEKCHRNRT----KRQINL------GRDGLTHNMLNDIHNHWKH 211
E I E +T+ ER+ + + R+ + I+L GR G+ +L +H HWKH
Sbjct: 657 EDIDLEIMTDEERECFRKMGLKMRSCLVLGKAISLHSTTSAGRRGVFDGVLEGLHQHWKH 716
Query: 212 AEAVRIKCLGVPTVDMKNVCFQLEDKTFGKII----FRHGGTLVLYRGRNYN 259
E ++ + + LE ++ G ++ + G +++YRG+NY+
Sbjct: 717 REVAKVITMQRLISRVIYTSQFLERESGGILVSVDQLKEGYAIIIYRGKNYS 768
>gi|357124470|ref|XP_003563923.1| PREDICTED: uncharacterized CRM domain-containing protein At3g25440,
chloroplastic-like [Brachypodium distachyon]
Length = 337
Score = 40.4 bits (93), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 47/97 (48%), Gaps = 5/97 (5%)
Query: 167 EPLTNAERKALVEKCHRNRT----KRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGV 222
EP+ + E EK + RT K + +GR G+ ++ ++H HWK E +++ C
Sbjct: 162 EPVHDPEILTEEEKFYLKRTGEKKKNYVPVGRRGVFGGVVLNMHLHWKKHETMKVVCKPC 221
Query: 223 PTVDMKNVCFQLEDKTFGKII-FRHGGTLVLYRGRNY 258
+ +L + G +I + T++ YRG+NY
Sbjct: 222 RPGQVYEYAEELARLSKGTVIDIKPNNTIIFYRGKNY 258
>gi|431930875|ref|YP_007243921.1| RNA-binding protein [Thioflavicoccus mobilis 8321]
gi|431829178|gb|AGA90291.1| putative RNA-binding protein containing KH domain, possibly
ribosomal protein [Thioflavicoccus mobilis 8321]
Length = 104
Score = 40.4 bits (93), Expect = 1.5, Method: Composition-based stats.
Identities = 29/102 (28%), Positives = 51/102 (50%), Gaps = 5/102 (4%)
Query: 167 EPLTNAERKALVEKCHRNRTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVD 226
+P+T +R+ L + H K + +G+ GL+ +LN+I H E +++K +
Sbjct: 5 KPITERQRRWLKRQVHH--LKPVVIVGQHGLSDPVLNEIGLALDHHELIKVKIAAGDRDE 62
Query: 227 MKNVCFQLEDKTFGKIIFRHGGTLVLYRGRNYNPKKRPVIPL 268
+ ++ ++T G +I R G T YR NPKKR + L
Sbjct: 63 RDALASEIAERTAGALIDRIGHTAAFYRA---NPKKRQPLAL 101
>gi|302766798|ref|XP_002966819.1| hypothetical protein SELMODRAFT_408011 [Selaginella moellendorffii]
gi|300164810|gb|EFJ31418.1| hypothetical protein SELMODRAFT_408011 [Selaginella moellendorffii]
Length = 672
Score = 40.4 bits (93), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 50/95 (52%), Gaps = 4/95 (4%)
Query: 167 EPLTNAERKALVEKCHRNRTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTV- 225
EPL+ E ++N+ + G+ G+ ++++IH +WK E VRIKC ++
Sbjct: 123 EPLSEGEAAHYARIGNKNQNFASV--GKRGIYGGVIHNIHTNWKFHETVRIKCPRHNSME 180
Query: 226 DMKNVCFQLEDKTFGKII-FRHGGTLVLYRGRNYN 259
+ + + +L + G ++ T++++RG+NY
Sbjct: 181 ETRRIGAELARLSGGIVLDVLEDRTVIMFRGKNYQ 215
>gi|449438181|ref|XP_004136868.1| PREDICTED: uncharacterized CRM domain-containing protein At3g25440,
chloroplastic-like [Cucumis sativus]
Length = 352
Score = 40.0 bits (92), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 47/98 (47%), Gaps = 3/98 (3%)
Query: 162 ERIQGEPLTNAERKALVEKCHRNRTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLG 221
E+ E LT E+ L K + K + LGR G+ ++ ++H HWK E V++ C
Sbjct: 191 EKYDPEILTEEEKHYL--KRTGEKKKNFVLLGRRGVFGGVVLNMHMHWKKHETVKVICKP 248
Query: 222 VPTVDMKNVCFQLEDKTFGKII-FRHGGTLVLYRGRNY 258
+ +L + G +I + +++ YRG+NY
Sbjct: 249 CKPGQVHEYAEELTRLSKGIVIDIKPNNSIIFYRGKNY 286
>gi|223986365|ref|ZP_03636372.1| hypothetical protein HOLDEFILI_03683 [Holdemania filiformis DSM
12042]
gi|223961656|gb|EEF66161.1| hypothetical protein HOLDEFILI_03683 [Holdemania filiformis DSM
12042]
Length = 97
Score = 40.0 bits (92), Expect = 1.8, Method: Composition-based stats.
Identities = 23/86 (26%), Positives = 46/86 (53%), Gaps = 2/86 (2%)
Query: 169 LTNAERKALVEKCHRNRTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMK 228
LTN ++ AL + N + +G++G+++N++N + + + E V++ L D++
Sbjct: 2 LTNKQKSAL--RSMANTLRPIFQVGKEGVSYNLINTLSDALEAHELVKLNVLKSCPDDVR 59
Query: 229 NVCFQLEDKTFGKIIFRHGGTLVLYR 254
V L T +++ G T+VLYR
Sbjct: 60 QVALDLASGTHAEVVQIIGKTIVLYR 85
>gi|408356446|ref|YP_006844977.1| hypothetical protein AXY_10830 [Amphibacillus xylanus NBRC 15112]
gi|407727217|dbj|BAM47215.1| hypothetical protein AXY_10830 [Amphibacillus xylanus NBRC 15112]
Length = 96
Score = 40.0 bits (92), Expect = 1.8, Method: Composition-based stats.
Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 2/86 (2%)
Query: 169 LTNAERKALVEKCHRNRTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMK 228
LT +++ L K H + Q+ G+DG+ NML + + E +++ L D +
Sbjct: 2 LTGKQKRFLRAKAHHLKPIFQV--GKDGVNENMLTQVSEALEKRELIKVNVLQNCLEDKE 59
Query: 229 NVCFQLEDKTFGKIIFRHGGTLVLYR 254
+V QL + T +++ G T+VLYR
Sbjct: 60 DVAEQLVNGTNAELVQIIGATIVLYR 85
>gi|162459283|ref|NP_001105859.1| LOC732768 [Zea mays]
gi|89212802|gb|ABD63903.1| CFM6 [Zea mays]
gi|413918693|gb|AFW58625.1| hypothetical protein ZEAMMB73_217436 [Zea mays]
Length = 338
Score = 39.7 bits (91), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 47/97 (48%), Gaps = 5/97 (5%)
Query: 167 EPLTNAERKALVEKCHRNRT----KRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGV 222
EP+ + E EK + RT K + +GR G+ ++ ++H HWK E V++ C
Sbjct: 162 EPVHDPEILTEEEKFYLKRTGEKKKNYVPVGRRGVFGGVVLNMHLHWKKHETVKVVCKPC 221
Query: 223 PTVDMKNVCFQLEDKTFGKII-FRHGGTLVLYRGRNY 258
+ +L + G +I + T++ YRG+NY
Sbjct: 222 RPGQVYEYAEELTRLSKGTVIDIKPNNTIMFYRGKNY 258
>gi|38637075|dbj|BAD03332.1| hypothetical protein [Oryza sativa Japonica Group]
gi|40253825|dbj|BAD05761.1| hypothetical protein [Oryza sativa Japonica Group]
gi|222640038|gb|EEE68170.1| hypothetical protein OsJ_26290 [Oryza sativa Japonica Group]
Length = 126
Score = 39.7 bits (91), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 5/56 (8%)
Query: 58 PNPTLNPNKNFKKKSKPQYRPPSSLDAPKKKYTDLPFDFRYSYTETNQNVRPIGLR 113
P P P KKK++ S+ P+ +DLPF+FRYSY++T+ RPIG +
Sbjct: 50 PRPASKPAHATKKKNQG-----GSIKQPELVRSDLPFNFRYSYSKTDPAWRPIGFQ 100
>gi|449479099|ref|XP_004155504.1| PREDICTED: uncharacterized CRM domain-containing protein At3g25440,
chloroplastic-like [Cucumis sativus]
Length = 290
Score = 39.7 bits (91), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 47/98 (47%), Gaps = 3/98 (3%)
Query: 162 ERIQGEPLTNAERKALVEKCHRNRTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLG 221
E+ E LT E+ L K + K + LGR G+ ++ ++H HWK E V++ C
Sbjct: 129 EKYDPEILTEEEKHYL--KRTGEKKKNFVLLGRRGVFGGVVLNMHMHWKKHETVKVICKP 186
Query: 222 VPTVDMKNVCFQLEDKTFGKII-FRHGGTLVLYRGRNY 258
+ +L + G +I + +++ YRG+NY
Sbjct: 187 CKPGQVHEYAEELTRLSKGIVIDIKPNNSIIFYRGKNY 224
>gi|332288658|ref|YP_004419510.1| RNA-binding protein YhbY [Gallibacterium anatis UMN179]
gi|330431554|gb|AEC16613.1| RNA-binding protein YhbY [Gallibacterium anatis UMN179]
Length = 100
Score = 39.7 bits (91), Expect = 2.6, Method: Composition-based stats.
Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 5/79 (6%)
Query: 190 INLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIFRHGGT 249
+ LG +GLT ++ +I N H E +++K GV + + V +E +T + R G
Sbjct: 24 VMLGGNGLTEGVIAEIDNALNHHELIKVKISGVDREEKELVVAAIERETGACAVQRIGHI 83
Query: 250 LVLYRGRNYNPKKRPVIPL 268
LVLYR P P I L
Sbjct: 84 LVLYR-----PSDEPTIVL 97
>gi|297612106|ref|NP_001068192.2| Os11g0592400 [Oryza sativa Japonica Group]
gi|255680227|dbj|BAF28555.2| Os11g0592400, partial [Oryza sativa Japonica Group]
Length = 108
Score = 39.3 bits (90), Expect = 2.7, Method: Composition-based stats.
Identities = 24/78 (30%), Positives = 41/78 (52%), Gaps = 6/78 (7%)
Query: 193 GRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKII----FRHGG 248
GR G+ + ++H HWK+ E V+I D+K + LE ++ G ++ G
Sbjct: 8 GRRGVFDGTIENMHLHWKYRELVKILVKAKSFGDVKKIALSLEAESGGILVSVDKVSKGY 67
Query: 249 TLVLYRGRNY-NPKK-RP 264
+V++RG++Y P K RP
Sbjct: 68 AIVVFRGKDYARPSKLRP 85
>gi|125560392|gb|EAZ05840.1| hypothetical protein OsI_28077 [Oryza sativa Indica Group]
Length = 125
Score = 39.3 bits (90), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 5/56 (8%)
Query: 58 PNPTLNPNKNFKKKSKPQYRPPSSLDAPKKKYTDLPFDFRYSYTETNQNVRPIGLR 113
P P P KKK++ S+ P+ +DLPF+FRYSY++T+ RPIG +
Sbjct: 50 PRPASKPAHATKKKNQG-----GSIKQPELVRSDLPFNFRYSYSKTDPAWRPIGFQ 100
>gi|357478871|ref|XP_003609721.1| CRM domain-containing protein, putative [Medicago truncatula]
gi|355510776|gb|AES91918.1| CRM domain-containing protein, putative [Medicago truncatula]
Length = 399
Score = 39.3 bits (90), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 45/98 (45%), Gaps = 3/98 (3%)
Query: 162 ERIQGEPLTNAERKALVEKCHRNRTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLG 221
E E LT ER L K + K + +GR G+ ++ ++H HWK+ E V++ C
Sbjct: 245 ETFDPEILTEEERHYL--KRTGEKKKHYVPVGRRGVFGGVVLNMHLHWKNHETVKVICKP 302
Query: 222 VPTVDMKNVCFQLEDKTFGKII-FRHGGTLVLYRGRNY 258
+L + G +I + ++ YRG+NY
Sbjct: 303 CKPGQAHEYAEELARLSKGIVIDIKPNSIIIFYRGKNY 340
>gi|224128874|ref|XP_002328988.1| predicted protein [Populus trichocarpa]
gi|222839222|gb|EEE77573.1| predicted protein [Populus trichocarpa]
Length = 342
Score = 39.3 bits (90), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 44/93 (47%), Gaps = 3/93 (3%)
Query: 167 EPLTNAERKALVEKCHRNRTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVD 226
E LT E+ L K + K + +GR G+ ++ ++H HWK E V++ C
Sbjct: 177 EILTEEEKHYL--KRTGEKKKNYVPVGRRGVFGGVVLNMHLHWKKHETVKVTCKPCKPGQ 234
Query: 227 MKNVCFQLEDKTFGKII-FRHGGTLVLYRGRNY 258
+ +L + G I R T++ YRG+NY
Sbjct: 235 IDEYAEELARLSKGIAIDIRPDNTIIFYRGKNY 267
>gi|195623148|gb|ACG33404.1| CRS1 / YhbY domain containing protein [Zea mays]
Length = 259
Score = 38.9 bits (89), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Query: 169 LTNAERKALVEKCHR-NRTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDM 227
L+ ERK L H + + +G+ G+T N+++ ++ + E +++K G ++
Sbjct: 96 LSVKERKELASYAHGLGKKLKSQQVGKSGVTPNLVSAFSDNLESNELLKLKIHGNCPGEL 155
Query: 228 KNVCFQLEDKTFGKIIFRHGGTLVLYR 254
+V QLE+ T + + G +++LYR
Sbjct: 156 PDVILQLEESTGSIAVDQIGRSVILYR 182
>gi|225444203|ref|XP_002270373.1| PREDICTED: uncharacterized CRM domain-containing protein At3g25440,
chloroplastic [Vitis vinifera]
gi|296089227|emb|CBI38999.3| unnamed protein product [Vitis vinifera]
Length = 269
Score = 38.9 bits (89), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 5/85 (5%)
Query: 179 EKCHRNRT----KRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQL 234
EK + RT K + +GR G+ ++ ++H HWK E V++ C + +L
Sbjct: 126 EKFYLKRTGEKKKNYVPVGRRGVFGGVVLNMHLHWKKHETVKVICKPCKVGQVYEYAEEL 185
Query: 235 EDKTFGKII-FRHGGTLVLYRGRNY 258
+ G +I + T++ YRG+NY
Sbjct: 186 ARLSKGIMIDIKPNNTIIFYRGKNY 210
>gi|212723242|ref|NP_001132805.1| uncharacterized protein LOC100194294 [Zea mays]
gi|194695436|gb|ACF81802.1| unknown [Zea mays]
gi|413933849|gb|AFW68400.1| CRS1 / YhbY domain containing protein [Zea mays]
Length = 259
Score = 38.9 bits (89), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Query: 169 LTNAERKALVEKCHR-NRTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDM 227
L+ ERK L H + + +G+ G+T N+++ ++ + E +++K G ++
Sbjct: 96 LSVKERKELASYAHGLGKKLKSQQVGKSGVTPNLVSAFSDNLESNELLKLKIHGNCPGEL 155
Query: 228 KNVCFQLEDKTFGKIIFRHGGTLVLYR 254
+V QLE+ T + + G +++LYR
Sbjct: 156 PDVILQLEESTGSIAVDQIGRSVILYR 182
>gi|242033975|ref|XP_002464382.1| hypothetical protein SORBIDRAFT_01g017260 [Sorghum bicolor]
gi|241918236|gb|EER91380.1| hypothetical protein SORBIDRAFT_01g017260 [Sorghum bicolor]
Length = 261
Score = 38.5 bits (88), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Query: 169 LTNAERKALVEKCHR-NRTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDM 227
L+ ERK L H + + +G+ G+T N+++ ++ + E +++K G ++
Sbjct: 100 LSVKERKELASYAHGLGKKLKSQQVGKSGVTPNLVSAFSDNLESNELLKLKIHGNCPGEL 159
Query: 228 KNVCFQLEDKTFGKIIFRHGGTLVLYR 254
+V QLE+ T + + G +++LYR
Sbjct: 160 PDVILQLEESTGSIAVDQIGRSVILYR 186
>gi|115442347|ref|NP_001045453.1| Os01g0958400 [Oryza sativa Japonica Group]
gi|57900096|dbj|BAD88158.1| group II intron splicing factor CRS1-like [Oryza sativa Japonica
Group]
gi|57900276|dbj|BAD87109.1| group II intron splicing factor CRS1-like [Oryza sativa Japonica
Group]
gi|113534984|dbj|BAF07367.1| Os01g0958400 [Oryza sativa Japonica Group]
gi|215768161|dbj|BAH00390.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218189771|gb|EEC72198.1| hypothetical protein OsI_05277 [Oryza sativa Indica Group]
gi|222619906|gb|EEE56038.1| hypothetical protein OsJ_04827 [Oryza sativa Japonica Group]
Length = 415
Score = 38.5 bits (88), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 54/116 (46%), Gaps = 11/116 (9%)
Query: 190 INLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIFRHGG- 248
+ +GR G+ ++ ++H HWK E V++ C ++ ++ + G I G
Sbjct: 191 VPVGRRGVFGGVILNMHLHWKKHETVKVICKPCKPGQIQEYASEIARLSGGIPINTIGND 250
Query: 249 TLVLYRGRNYNPKKRPVIPLMLWRPHEPVYPKLIKTTIEGLSIEETKEMRKRGLAV 304
T+V YRG+NY V P ++ PV K +E E++ E +R +AV
Sbjct: 251 TIVFYRGKNY------VQPDVM----SPVDTLSKKKALEKSKYEQSLETVRRFIAV 296
>gi|147771494|emb|CAN73653.1| hypothetical protein VITISV_005730 [Vitis vinifera]
Length = 239
Score = 38.5 bits (88), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 56/114 (49%), Gaps = 1/114 (0%)
Query: 142 KSAEEGAEDPNLEEKRILVRERIQGEPLTNAERKALVEKCHRNRTKRQINL-GRDGLTHN 200
+S E A+ L E V+E + LT E+K L H K + L G+ G+T +
Sbjct: 87 ESGGEIAKQEELYESEETVKETSRPVNLTIKEKKELASYAHSLGKKLKCQLVGKQGVTAS 146
Query: 201 MLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIFRHGGTLVLYR 254
+ + + + E ++IK G ++ +V QLE+ T ++ + G +++LYR
Sbjct: 147 VASAFIENLESNELLKIKIHGTCPGELPDVVKQLEESTGSVVVGQIGRSVILYR 200
>gi|326499844|dbj|BAJ90757.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 286
Score = 38.5 bits (88), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 47/92 (51%), Gaps = 1/92 (1%)
Query: 173 ERKALVEKCHR-NRTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVC 231
ERK L H + + +G+ G+T N++ ++ + E +++K G ++ +V
Sbjct: 132 ERKELASYAHGLGKKLKSQQVGKGGVTPNLVTAFTDNLESNELLKLKIHGNCPGELPDVI 191
Query: 232 FQLEDKTFGKIIFRHGGTLVLYRGRNYNPKKR 263
QLE+ T + + G +++LYR + KKR
Sbjct: 192 RQLEESTGSIAVDQIGRSVILYRPSSSKMKKR 223
>gi|57900098|dbj|BAD88160.1| group II intron splicing factor CRS1-like [Oryza sativa Japonica
Group]
gi|57900278|dbj|BAD87111.1| group II intron splicing factor CRS1-like [Oryza sativa Japonica
Group]
Length = 394
Score = 38.1 bits (87), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 53/114 (46%), Gaps = 11/114 (9%)
Query: 192 LGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIFRHGG-TL 250
+GR G+ ++ ++H HWK E V++ C ++ ++ + G I G T+
Sbjct: 193 VGRRGVFGGVILNMHLHWKKHETVKVICKPCKPGQIQEYASEIARLSGGIPINTIGNDTI 252
Query: 251 VLYRGRNYNPKKRPVIPLMLWRPHEPVYPKLIKTTIEGLSIEETKEMRKRGLAV 304
V YRG+NY V P ++ PV K +E E++ E +R +AV
Sbjct: 253 VFYRGKNY------VQPDVM----SPVDTLSKKKALEKSKYEQSLETVRRFIAV 296
>gi|57900097|dbj|BAD88159.1| group II intron splicing factor CRS1-like [Oryza sativa Japonica
Group]
gi|57900277|dbj|BAD87110.1| group II intron splicing factor CRS1-like [Oryza sativa Japonica
Group]
gi|215695021|dbj|BAG90212.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 417
Score = 37.7 bits (86), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 33/135 (24%), Positives = 63/135 (46%), Gaps = 12/135 (8%)
Query: 171 NAERKALVEKCHRNRTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNV 230
+ E + ++K + ++ + +GR G+ ++ ++H HWK E V++ C ++
Sbjct: 173 DGEERFYLKKVSQKKS-NYVPVGRRGVFGGVILNMHLHWKKHETVKVICKPCKPGQIQEY 231
Query: 231 CFQLEDKTFGKIIFRHGG-TLVLYRGRNYNPKKRPVIPLMLWRPHEPVYPKLIKTTIEGL 289
++ + G I G T+V YRG+NY V P ++ PV K +E
Sbjct: 232 ASEIARLSGGIPINTIGNDTIVFYRGKNY------VQPDVM----SPVDTLSKKKALEKS 281
Query: 290 SIEETKEMRKRGLAV 304
E++ E +R +AV
Sbjct: 282 KYEQSLETVRRFIAV 296
>gi|307243152|ref|ZP_07525326.1| RNA-binding protein, YhbY family [Peptostreptococcus stomatis DSM
17678]
gi|306493512|gb|EFM65491.1| RNA-binding protein, YhbY family [Peptostreptococcus stomatis DSM
17678]
Length = 129
Score = 37.7 bits (86), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 22/97 (22%), Positives = 42/97 (43%), Gaps = 7/97 (7%)
Query: 184 NRTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKII 243
N TK +G++G+T + L+ + + + E V++ L +D K + + + +
Sbjct: 15 NTTKPTSQIGKEGITQDFLDQLEDQLRARELVKVTILDNAGIDAKEAANAICAEIRAEFV 74
Query: 244 FRHGGTLVLYRGRNYNPKKRPVIPLMLWRPHEPVYPK 280
G +Y+ N NPK + + HE PK
Sbjct: 75 QAIGSKFTIYKKNNENPK-------ISFPGHEQAKPK 104
>gi|387127774|ref|YP_006296379.1| RNA binding protein [Methylophaga sp. JAM1]
gi|386274836|gb|AFI84734.1| RNA binding protein [Methylophaga sp. JAM1]
Length = 97
Score = 37.4 bits (85), Expect = 10.0, Method: Composition-based stats.
Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 5/82 (6%)
Query: 187 KRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIFRH 246
K + +G GLT N+L +I N + E ++++ G D K + ++ +KT ++
Sbjct: 19 KPVVMIGNAGLTENVLAEIENALAYHELIKVRVSGQEKADRKQMLDEIVEKTGADLVMVI 78
Query: 247 GGTLVLYRGRNYNPKKRPVIPL 268
G LYR P +PVI L
Sbjct: 79 GHIGGLYR-----PADKPVIQL 95
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.318 0.136 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,163,866,472
Number of Sequences: 23463169
Number of extensions: 282872389
Number of successful extensions: 950568
Number of sequences better than 100.0: 380
Number of HSP's better than 100.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 213
Number of HSP's that attempted gapping in prelim test: 949183
Number of HSP's gapped (non-prelim): 1173
length of query: 364
length of database: 8,064,228,071
effective HSP length: 144
effective length of query: 220
effective length of database: 8,980,499,031
effective search space: 1975709786820
effective search space used: 1975709786820
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 77 (34.3 bits)