Query 017893
Match_columns 364
No_of_seqs 178 out of 764
Neff 3.9
Searched_HMMs 46136
Date Fri Mar 29 04:20:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017893.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017893hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01985 CRS1_YhbY: CRS1 / Yhb 99.9 2.1E-27 4.5E-32 191.0 11.4 84 169-254 1-84 (84)
2 PRK10343 RNA-binding protein Y 99.9 3.1E-27 6.7E-32 196.5 12.8 89 167-257 1-89 (97)
3 TIGR00253 RNA_bind_YhbY putati 99.9 5.5E-27 1.2E-31 194.2 12.7 87 169-257 1-87 (95)
4 COG1534 Predicted RNA-binding 99.9 2.9E-25 6.2E-30 184.8 11.9 87 168-256 1-87 (97)
5 KOG1990 Poly(A)-specific exori 99.5 1.3E-14 2.9E-19 151.0 7.9 193 166-362 11-251 (564)
6 PF01985 CRS1_YhbY: CRS1 / Yhb 99.1 5.2E-11 1.1E-15 96.1 4.4 74 289-362 1-74 (84)
7 KOG1990 Poly(A)-specific exori 98.3 6.2E-07 1.3E-11 94.3 5.3 194 166-362 172-457 (564)
8 TIGR00253 RNA_bind_YhbY putati 97.8 4.1E-05 8.9E-10 64.1 6.5 73 289-361 1-73 (95)
9 PRK10343 RNA-binding protein Y 97.5 0.00036 7.7E-09 58.8 6.6 73 289-361 3-75 (97)
10 COG1534 Predicted RNA-binding 96.5 0.007 1.5E-07 51.3 6.1 73 289-361 2-74 (97)
11 PF04472 DUF552: Protein of un 51.5 1.2E+02 0.0025 23.8 7.7 55 202-257 12-69 (73)
12 PF03048 Herpes_UL92: UL92 fam 50.7 9.5 0.00021 36.1 1.7 25 306-330 167-191 (192)
13 PF10369 ALS_ss_C: Small subun 48.9 34 0.00073 27.2 4.4 36 214-253 6-41 (75)
14 TIGR03264 met_CoM_red_C methyl 47.1 35 0.00076 32.5 4.8 64 287-355 89-154 (194)
15 cd08619 PI-PLCXDc_plant Cataly 38.4 58 0.0013 32.6 5.2 62 198-259 93-170 (285)
16 COG2390 DeoR Transcriptional r 33.1 1.4E+02 0.0029 30.3 6.8 52 195-247 36-87 (321)
17 KOG1014 17 beta-hydroxysteroid 32.1 87 0.0019 31.9 5.3 75 174-253 63-138 (312)
18 PRK02714 O-succinylbenzoate sy 31.3 86 0.0019 30.9 5.1 64 291-355 123-189 (320)
19 PF13604 AAA_30: AAA domain; P 31.0 2.8E+02 0.006 25.2 8.0 65 168-239 1-67 (196)
20 PRK12465 xylose isomerase; Pro 30.8 25 0.00054 37.2 1.3 17 116-132 64-80 (445)
21 PRK06806 fructose-bisphosphate 29.3 2E+02 0.0043 28.4 7.2 60 167-234 185-244 (281)
22 COG1098 VacB Predicted RNA bin 28.3 46 0.001 29.9 2.4 27 197-223 38-64 (129)
23 PF01918 Alba: Alba; InterPro 27.2 2.8E+02 0.0061 21.0 7.1 52 189-240 2-58 (70)
24 cd08557 PI-PLCc_bacteria_like 27.1 2E+02 0.0044 26.6 6.5 64 195-258 78-161 (271)
25 PF04019 DUF359: Protein of un 26.7 1.8E+02 0.0039 25.6 5.7 51 193-245 42-92 (121)
26 cd03315 MLE_like Muconate lact 26.5 86 0.0019 29.6 4.0 63 292-355 91-155 (265)
27 cd05797 Ribosomal_L10 Ribosoma 26.1 4.4E+02 0.0094 23.1 8.1 74 173-255 8-83 (157)
28 PRK05474 xylose isomerase; Pro 25.7 33 0.00071 36.4 1.1 16 117-132 55-70 (437)
29 COG1514 LigT 2'-5' RNA ligase 25.5 1.2E+02 0.0026 28.0 4.6 106 215-330 40-147 (180)
30 PRK00099 rplJ 50S ribosomal pr 25.3 4.2E+02 0.009 23.7 8.0 74 173-255 9-84 (172)
31 cd03318 MLE Muconate Lactonizi 25.3 1E+02 0.0022 30.5 4.4 62 293-355 149-214 (365)
32 PF14226 DIOX_N: non-haem diox 25.2 2.2E+02 0.0048 23.0 5.7 36 199-234 14-49 (116)
33 PRK11895 ilvH acetolactate syn 24.4 2.2E+02 0.0048 26.1 6.1 71 170-253 53-123 (161)
34 TIGR02630 xylose_isom_A xylose 24.2 37 0.0008 35.9 1.2 15 117-131 54-68 (434)
35 COG1576 Uncharacterized conser 24.1 1.4E+02 0.0031 27.6 4.8 49 163-211 74-123 (155)
36 cd03320 OSBS o-Succinylbenzoat 23.9 1.2E+02 0.0026 28.7 4.4 63 292-355 88-153 (263)
37 PF04530 Viral_Beta_CD: Viral 23.6 78 0.0017 28.3 2.9 21 190-211 93-113 (122)
38 PRK09860 putative alcohol dehy 23.1 4.8E+02 0.01 26.4 8.8 62 186-248 31-97 (383)
39 PRK07315 fructose-bisphosphate 22.9 3.2E+02 0.0068 27.2 7.3 59 168-233 187-245 (293)
40 KOG2335 tRNA-dihydrouridine sy 22.6 1.3E+02 0.0028 31.3 4.6 53 196-250 127-179 (358)
41 cd05795 Ribosomal_P0_L10e Ribo 22.3 2.8E+02 0.0061 25.2 6.3 47 172-222 5-51 (175)
42 PF01188 MR_MLE: Mandelate rac 22.1 1.3E+02 0.0027 22.8 3.5 36 320-355 2-38 (67)
43 PF12558 DUF3744: ATP-binding 21.4 27 0.00059 27.8 -0.3 10 109-118 7-16 (74)
44 cd00379 Ribosomal_L10_P0 Ribos 20.6 5.5E+02 0.012 22.0 8.0 74 173-255 6-81 (155)
45 cd07766 DHQ_Fe-ADH Dehydroquin 20.5 6.3E+02 0.014 24.5 8.8 60 186-248 23-87 (332)
46 cd03319 L-Ala-DL-Glu_epimerase 20.1 1.5E+02 0.0033 28.7 4.4 62 292-355 140-203 (316)
No 1
>PF01985 CRS1_YhbY: CRS1 / YhbY (CRM) domain; InterPro: IPR001890 The CRM domain is an ~100-amino acid RNA-binding domain. The name chloroplast RNA splicing and ribosome maturation (CRM) has been suggested to reflect the functions established for the four characterised members of the family: Zea mays (Maize) CRS1 (Q9FYT6 from SWISSPROT), CAF1 (Q84N49 from SWISSPROT) and CAF2 (Q84N48 from SWISSPROT) proteins and the Escherichia coli protein YhbY (P0AGK4 from SWISSPROT). The CRM domain is found in eubacteria, archaea, and plants. The CRM domain is represented as a stand-alone protein in archaea and bacteria, and in single- and multi-domain proteins in plants. It has been suggested that prokaryotic CRM proteins existed as ribosome-associated proteins prior to the divergence of archaea and bacteria, and that they were co-opted in the plant lineage as RNA binding modules by incorporation into diverse protein contexts. Plant CRM domains are predicted to reside not only in the chloroplast, but also in the mitochondrion and the nucleo/cytoplasmic compartment. The diversity of the CRM domain family in plants suggests a diverse set of RNA targets [, ]. The CRM domain is a compact alpha/beta domain consisting of a four-stranded beta sheet and three alpha helices with an alpha-beta-alpha-beta-alpha-beta-beta topology. The beta sheet face is basic, consistent with a role in RNA binding. Proximal to the basic beta sheet face is another moiety that could contribute to nucleic acid recognition. Connecting strand beta1 and helix alpha2 is a loop with a six amino acid motif, GxxG flanked by large aliphatic residues, within which one 'x' is typically a basic residue []. Escherichia coli YhbY is associated with pre-50S ribosomal subunits, which implies a function in ribosome assembly. GFP fused to a single-domain CRM protein from maize localises to the nucleolus, suggesting that an analogous activity may have been retained in plants []. A CRM domain containing protein in plant chloroplasts has been shown to function in group I and II intron splicing []. In vitro experiments with an isolated maize CRM domain have shown it to have RNA binding activity. These and other results suggest that the CRM domain evolved in the context of ribosome function prior to the divergence of Archaea and Bacteria, that this function has been maintained in extant prokaryotes, and that the domain was recruited to serve as an RNA binding module during the evolution of plant genomes []. YhbY has a fold similar to that of the C-terminal domain of translation initiation factor 3 (IF3C), which binds to 16S rRNA in the 30S ribosome [].; GO: 0003723 RNA binding; PDB: 1RQ8_A 1JO0_B 1LN4_A.
Probab=99.95 E-value=2.1e-27 Score=191.02 Aligned_cols=84 Identities=36% Similarity=0.543 Sum_probs=75.2
Q ss_pred CCHHHHHHHHHHhhhCCCCceEEeCCCCCCHHHHHHHHHHHHhCCeeEEEeCCCChHhHHHHHHHHHHhcCCEEEEEECC
Q 017893 169 LTNAERKALVEKCHRNRTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIFRHGG 248 (364)
Q Consensus 169 LT~kERk~LRk~Ah~~kLkPvV~IGK~GLTd~VVeeI~~aLk~hELVKVK~l~~~~~dmkeiae~LeekTGg~VVq~IG~ 248 (364)
||++|+++||+.|| +++|+|+|||+|||++|+++|+++|++||||||+|.+++..++++++++|+++|||++||++|+
T Consensus 1 Lt~ke~~~Lr~~a~--~l~p~v~IGk~Glt~~vi~~i~~~l~~~eLvKVk~~~~~~~~~~~~~~~l~~~t~~~~V~~iG~ 78 (84)
T PF01985_consen 1 LTSKERKFLRKLAH--HLKPVVQIGKNGLTDGVIEEIDDALEKHELVKVKVLGNCREDRKEIAEQLAEKTGAEVVQVIGR 78 (84)
T ss_dssp --HHHHHHHHHHHT--TC--SEEE-TTSS-HHHHHHHHHHHHHHSEEEEEETT--HHHHHHHHHHHHHHHTEEEEEEETT
T ss_pred CCHHHHHHHHHHhc--CCCCeEEECCCCCCHHHHHHHHHHHHhCCeeEEEEccCCHHHHHHHHHHHHHHhCCEEEEEECC
Confidence 79999999999999 6999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEc
Q 017893 249 TLVLYR 254 (364)
Q Consensus 249 tiVLYR 254 (364)
++||||
T Consensus 79 ~~vlyR 84 (84)
T PF01985_consen 79 TIVLYR 84 (84)
T ss_dssp EEEEEE
T ss_pred EEEEEC
Confidence 999998
No 2
>PRK10343 RNA-binding protein YhbY; Provisional
Probab=99.95 E-value=3.1e-27 Score=196.48 Aligned_cols=89 Identities=25% Similarity=0.298 Sum_probs=86.3
Q ss_pred CCCCHHHHHHHHHHhhhCCCCceEEeCCCCCCHHHHHHHHHHHHhCCeeEEEeCCCChHhHHHHHHHHHHhcCCEEEEEE
Q 017893 167 EPLTNAERKALVEKCHRNRTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIFRH 246 (364)
Q Consensus 167 e~LT~kERk~LRk~Ah~~kLkPvV~IGK~GLTd~VVeeI~~aLk~hELVKVK~l~~~~~dmkeiae~LeekTGg~VVq~I 246 (364)
++||++||++||++|| +++|+|+|||+|||++|+++|+++|++||||||++++++.++.++++++|+++|||++||+|
T Consensus 1 m~Lt~kqr~~LR~~ah--~l~Pvv~IGk~Glt~~vi~ei~~aL~~hELIKvkv~~~~~~~~~e~~~~i~~~~~ae~Vq~I 78 (97)
T PRK10343 1 MNLSTKQKQHLKGLAH--PLKPVVLLGSNGLTEGVLAEIEQALEHHELIKVKIATEDRETKTLIVEAIVRETGACNVQVI 78 (97)
T ss_pred CCCCHHHHHHHHHhcC--CCCCeEEECCCCCCHHHHHHHHHHHHHCCcEEEEecCCChhHHHHHHHHHHHHHCCEEEeee
Confidence 3699999999999999 69999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEEcCCC
Q 017893 247 GGTLVLYRGRN 257 (364)
Q Consensus 247 G~tiVLYRgkn 257 (364)
|+++||||++.
T Consensus 79 G~~~vlYR~~~ 89 (97)
T PRK10343 79 GKTLVLYRPTK 89 (97)
T ss_pred CcEEEEEecCC
Confidence 99999999964
No 3
>TIGR00253 RNA_bind_YhbY putative RNA-binding protein, YhbY family. A combination of crystal structure, molecular modeling, and bioinformatic data together suggest that members of this family, including YhbY of E. coli, are RNA binding proteins.
Probab=99.94 E-value=5.5e-27 Score=194.16 Aligned_cols=87 Identities=26% Similarity=0.379 Sum_probs=85.0
Q ss_pred CCHHHHHHHHHHhhhCCCCceEEeCCCCCCHHHHHHHHHHHHhCCeeEEEeCCCChHhHHHHHHHHHHhcCCEEEEEECC
Q 017893 169 LTNAERKALVEKCHRNRTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIFRHGG 248 (364)
Q Consensus 169 LT~kERk~LRk~Ah~~kLkPvV~IGK~GLTd~VVeeI~~aLk~hELVKVK~l~~~~~dmkeiae~LeekTGg~VVq~IG~ 248 (364)
||++||++||+.|| +|+|+|+|||+|||++|+++|+++|++||||||++++++.++.++++++|+++|||++||+||+
T Consensus 1 Lt~kqr~~Lr~~ah--~l~p~v~IGK~Glt~~vi~ei~~aL~~hELIKVkvl~~~~~~~~e~a~~i~~~~~a~~Vq~iG~ 78 (95)
T TIGR00253 1 LTGKQKRHLRGKAH--HLKPVVLVGKNGLTEGVIKEIEQALEHRELIKVKVATEDREDKTLIAEALVKETGACNVQVIGK 78 (95)
T ss_pred CCHHHHHHHHHHhC--CCCCeEEECCCCCCHHHHHHHHHHHHhCCcEEEEecCCChhHHHHHHHHHHHHHCCEEEEEEcc
Confidence 79999999999999 6999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEcCCC
Q 017893 249 TLVLYRGRN 257 (364)
Q Consensus 249 tiVLYRgkn 257 (364)
++||||++.
T Consensus 79 ~~vlYR~~~ 87 (95)
T TIGR00253 79 TIVLYRPTK 87 (95)
T ss_pred EEEEEecCC
Confidence 999999964
No 4
>COG1534 Predicted RNA-binding protein containing KH domain, possibly ribosomal protein [Translation, ribosomal structure and biogenesis]
Probab=99.93 E-value=2.9e-25 Score=184.80 Aligned_cols=87 Identities=29% Similarity=0.463 Sum_probs=84.6
Q ss_pred CCCHHHHHHHHHHhhhCCCCceEEeCCCCCCHHHHHHHHHHHHhCCeeEEEeCCCChHhHHHHHHHHHHhcCCEEEEEEC
Q 017893 168 PLTNAERKALVEKCHRNRTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIFRHG 247 (364)
Q Consensus 168 ~LT~kERk~LRk~Ah~~kLkPvV~IGK~GLTd~VVeeI~~aLk~hELVKVK~l~~~~~dmkeiae~LeekTGg~VVq~IG 247 (364)
+||++|+++||+.|| +++|+|+|||+|||++|++||+++|++||||||++.+++.+|.+++++.|++++||.+||+||
T Consensus 1 ~Lt~kq~~~Lrs~Ah--~l~piv~IGk~Glte~vi~Ei~~aL~~reLIKVkvl~~~~edr~eia~~l~~~~~a~lVqviG 78 (97)
T COG1534 1 MLTGKQKRFLRSKAH--HLKPIVQIGKNGLTEGVIKEIDRALEARELIKVKVLQNAREDKKEIAEALAEETGAELVQVIG 78 (97)
T ss_pred CCcHHHHHHHHHhhc--cCCceEEecCCccCHHHHHHHHHHHHhCCcEEEEeeccchhhHHHHHHHHHHHhCCEEeeeee
Confidence 589999999999999 599999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEcCC
Q 017893 248 GTLVLYRGR 256 (364)
Q Consensus 248 ~tiVLYRgk 256 (364)
+++||||.+
T Consensus 79 ~~~vlyr~~ 87 (97)
T COG1534 79 KTLVLYRES 87 (97)
T ss_pred eEEEEEecC
Confidence 999999953
No 5
>KOG1990 consensus Poly(A)-specific exoribonuclease PARN [Replication, recombination and repair]
Probab=99.53 E-value=1.3e-14 Score=151.02 Aligned_cols=193 Identities=17% Similarity=0.137 Sum_probs=164.5
Q ss_pred CCCCCHHHHHHHHHHhhhCCCCceEEeCCCCCCHHHHHHHHHHHHhCCeeEEEeCCCChHhHHHHHHHHHHhcCC-EEEE
Q 017893 166 GEPLTNAERKALVEKCHRNRTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFG-KIIF 244 (364)
Q Consensus 166 ~e~LT~kERk~LRk~Ah~~kLkPvV~IGK~GLTd~VVeeI~~aLk~hELVKVK~l~~~~~dmkeiae~LeekTGg-~VVq 244 (364)
...+.+.+..+||..|. ++...+ +++|+|+++++.|++.|+.+|+++++|....+..|....+.++..+++ -+||
T Consensus 11 ~~~~~~~~~~~l~~~~~--~~~~~~--~~~~~~~~~~~~~y~k~k~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~n~~~~ 86 (564)
T KOG1990|consen 11 ELTVDEADLRRLRLVAT--GMTSAP--WKAGSTFDTVEAIYLKWKDNEEVYLKFQFGLCLFMKRSHEALEMSTGGNFVVW 86 (564)
T ss_pred HhhcCHHHHHHHhhhhc--cceecc--cccccchhhhHHHHHHHHhhhhhheeeccccchhHHHhhhHhhccCCCceeee
Confidence 35688899999999997 455555 999999999999999999999999999999999999999999999999 9999
Q ss_pred EECCEEEEEcCCCCCCC----CCC---cc--------------------cccccC--CCCCCchhhhhhh----------
Q 017893 245 RHGGTLVLYRGRNYNPK----KRP---VI--------------------PLMLWR--PHEPVYPKLIKTT---------- 285 (364)
Q Consensus 245 ~IG~tiVLYRgknY~~~----~RP---~i--------------------plmlwk--p~~Pv~pklik~~---------- 285 (364)
..|.....|++..|.-+ .|. .. ..+.|- ...|++-+++.+.
T Consensus 87 ~~g~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dl~~~~i~~~~~p~r~ 166 (564)
T KOG1990|consen 87 SRGDSISSPEFLCQRSPVDFVARQQENQAGKWPSELEKEKNELLDSLGPELSDWGGSDRLSVDADLLPEKIPDYMRPFRT 166 (564)
T ss_pred ecCccccCCccceeecchhhhhhhchhhhhhhHHHHHHHHHHHhhccCcccccCCCCCCccchhhhchhhhhcccChhcc
Confidence 99999988866555311 111 00 123344 5666766666443
Q ss_pred -----cCCCCHHHHHHHHhCCCCCCceEEeccCCCCCchhHHHHHHhhhcceEEEecc-CCCcchhHHHHHhh--hcccc
Q 017893 286 -----IEGLSIEETKEMRKRGLAVPVLTKLAKNGYYGSLVPMVRDAFLVSELVRIDCQ-GLERSDYKKIGCKL--RSWFR 357 (364)
Q Consensus 286 -----~eGLs~eE~telRr~g~~lp~~~kLgRNg~~~~Lv~~V~~~we~s~ivKI~ck-G~~~sd~~kig~kL--k~L~~ 357 (364)
++.|+..|.+.+|+.|..+|+||.+|+++.+++++.++++.|+++++++|.|+ |+..+..+.||++| +.+++
T Consensus 167 l~~~~~~~l~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~k~~~~k~~~~rg~~~~~~~~~a~~l~~~~~tg 246 (564)
T KOG1990|consen 167 LPVGSPPLLTSIESTLLRRLGYKLPPHFALGRSRKLQGLAVAMVSFWEKHEFAKILIKRGVLETRKERMADELQELLLTG 246 (564)
T ss_pred CCCCChhhhhhHHHHHHHHhcccccccceehhccccccchhHHHHHHHHHHHHHHHHHhcchhhhccchHHHHHHHHhcC
Confidence 35599999999999999999999999999999999999999999999999997 99999999999999 99999
Q ss_pred eeecc
Q 017893 358 ISFLA 362 (364)
Q Consensus 358 ~vll~ 362 (364)
++|+.
T Consensus 247 ~~lv~ 251 (564)
T KOG1990|consen 247 KVLVL 251 (564)
T ss_pred CeEEe
Confidence 98864
No 6
>PF01985 CRS1_YhbY: CRS1 / YhbY (CRM) domain; InterPro: IPR001890 The CRM domain is an ~100-amino acid RNA-binding domain. The name chloroplast RNA splicing and ribosome maturation (CRM) has been suggested to reflect the functions established for the four characterised members of the family: Zea mays (Maize) CRS1 (Q9FYT6 from SWISSPROT), CAF1 (Q84N49 from SWISSPROT) and CAF2 (Q84N48 from SWISSPROT) proteins and the Escherichia coli protein YhbY (P0AGK4 from SWISSPROT). The CRM domain is found in eubacteria, archaea, and plants. The CRM domain is represented as a stand-alone protein in archaea and bacteria, and in single- and multi-domain proteins in plants. It has been suggested that prokaryotic CRM proteins existed as ribosome-associated proteins prior to the divergence of archaea and bacteria, and that they were co-opted in the plant lineage as RNA binding modules by incorporation into diverse protein contexts. Plant CRM domains are predicted to reside not only in the chloroplast, but also in the mitochondrion and the nucleo/cytoplasmic compartment. The diversity of the CRM domain family in plants suggests a diverse set of RNA targets [, ]. The CRM domain is a compact alpha/beta domain consisting of a four-stranded beta sheet and three alpha helices with an alpha-beta-alpha-beta-alpha-beta-beta topology. The beta sheet face is basic, consistent with a role in RNA binding. Proximal to the basic beta sheet face is another moiety that could contribute to nucleic acid recognition. Connecting strand beta1 and helix alpha2 is a loop with a six amino acid motif, GxxG flanked by large aliphatic residues, within which one 'x' is typically a basic residue []. Escherichia coli YhbY is associated with pre-50S ribosomal subunits, which implies a function in ribosome assembly. GFP fused to a single-domain CRM protein from maize localises to the nucleolus, suggesting that an analogous activity may have been retained in plants []. A CRM domain containing protein in plant chloroplasts has been shown to function in group I and II intron splicing []. In vitro experiments with an isolated maize CRM domain have shown it to have RNA binding activity. These and other results suggest that the CRM domain evolved in the context of ribosome function prior to the divergence of Archaea and Bacteria, that this function has been maintained in extant prokaryotes, and that the domain was recruited to serve as an RNA binding module during the evolution of plant genomes []. YhbY has a fold similar to that of the C-terminal domain of translation initiation factor 3 (IF3C), which binds to 16S rRNA in the 30S ribosome [].; GO: 0003723 RNA binding; PDB: 1RQ8_A 1JO0_B 1LN4_A.
Probab=99.12 E-value=5.2e-11 Score=96.06 Aligned_cols=74 Identities=26% Similarity=0.322 Sum_probs=64.2
Q ss_pred CCHHHHHHHHhCCCCCCceEEeccCCCCCchhHHHHHHhhhcceEEEeccCCCcchhHHHHHhhhcccceeecc
Q 017893 289 LSIEETKEMRKRGLAVPVLTKLAKNGYYGSLVPMVRDAFLVSELVRIDCQGLERSDYKKIGCKLRSWFRISFLA 362 (364)
Q Consensus 289 Ls~eE~telRr~g~~lp~~~kLgRNg~~~~Lv~~V~~~we~s~ivKI~ckG~~~sd~~kig~kLk~L~~~vll~ 362 (364)
||.+|..++|+.|..+.|++.+|+||...+++++|.++|+..|||||.|.+..+.|.+.|+++|.+.++|.+..
T Consensus 1 Lt~ke~~~Lr~~a~~l~p~v~IGk~Glt~~vi~~i~~~l~~~eLvKVk~~~~~~~~~~~~~~~l~~~t~~~~V~ 74 (84)
T PF01985_consen 1 LTSKERKFLRKLAHHLKPVVQIGKNGLTDGVIEEIDDALEKHELVKVKVLGNCREDRKEIAEQLAEKTGAEVVQ 74 (84)
T ss_dssp --HHHHHHHHHHHTTC--SEEE-TTSS-HHHHHHHHHHHHHHSEEEEEETT--HHHHHHHHHHHHHHHTEEEEE
T ss_pred CCHHHHHHHHHHhcCCCCeEEECCCCCCHHHHHHHHHHHHhCCeeEEEEccCCHHHHHHHHHHHHHHhCCEEEE
Confidence 68999999999999999999999999999999999999999999999999999999999999999999998863
No 7
>KOG1990 consensus Poly(A)-specific exoribonuclease PARN [Replication, recombination and repair]
Probab=98.31 E-value=6.2e-07 Score=94.26 Aligned_cols=194 Identities=19% Similarity=0.194 Sum_probs=155.8
Q ss_pred CCCCCHHHHHHHHHHhhhCCCCceEEeCCCCCCHHHHHHHHHHHHhCCeeEEEeCCC-ChHhHHHHHHHH--HHhcCCEE
Q 017893 166 GEPLTNAERKALVEKCHRNRTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGV-PTVDMKNVCFQL--EDKTFGKI 242 (364)
Q Consensus 166 ~e~LT~kERk~LRk~Ah~~kLkPvV~IGK~GLTd~VVeeI~~aLk~hELVKVK~l~~-~~~dmkeiae~L--eekTGg~V 242 (364)
...|+..|.-.+|.++- ...+.+.+|.++.-+++.-.+...|+.|+.+|+.+... .....+.++..+ -..+|+.+
T Consensus 172 ~~~l~~~~~~~~r~~~~--~~p~~~~~~~~~~~~~~~~~~~~~~~k~~~~k~~~~rg~~~~~~~~~a~~l~~~~~tg~~l 249 (564)
T KOG1990|consen 172 PPLLTSIESTLLRRLGY--KLPPHFALGRSRKLQGLAVAMVSFWEKHEFAKILIKRGVLETRKERMADELQELLLTGKVL 249 (564)
T ss_pred hhhhhhHHHHHHHHhcc--cccccceehhccccccchhHHHHHHHHHHHHHHHHHhcchhhhccchHHHHHHHHhcCCeE
Confidence 35799999999999998 79999999999999999999999999999999887754 444566777777 88899999
Q ss_pred EEEECCEEEEEcCCCCCCCCCCc-----------ccc-----------------------------cccCC-CCC-----
Q 017893 243 IFRHGGTLVLYRGRNYNPKKRPV-----------IPL-----------------------------MLWRP-HEP----- 276 (364)
Q Consensus 243 Vq~IG~tiVLYRgknY~~~~RP~-----------ipl-----------------------------mlwkp-~~P----- 276 (364)
|.+.+...|+||++++-. .-|. ||. ..|.+ .++
T Consensus 250 v~hN~~~dv~y~~~~Fl~-~lp~~l~~f~~~~~~fp~~~~~~~~~~~~~~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~ 328 (564)
T KOG1990|consen 250 VLHNKLLDVMYRYKNFLS-PLPSTLEEFTDSSSMFPNIEDTKRLAKLSEYQKLNLKATLLELARAKAKKEKEIERRSISS 328 (564)
T ss_pred Eeeccceeeeeehhhccc-ccchhHHHhhhhhhhhhhhHHHHHhhccccccchhhhhhHHHHHHHhcccccCcccccccc
Confidence 999999999999887643 2110 110 00110 000
Q ss_pred -C----------------chhh-------------------------hhhhcCCCCHHHHHHHHhCCCCCCceEEeccCC
Q 017893 277 -V----------------YPKL-------------------------IKTTIEGLSIEETKEMRKRGLAVPVLTKLAKNG 314 (364)
Q Consensus 277 -v----------------~pkl-------------------------ik~~~eGLs~eE~telRr~g~~lp~~~kLgRNg 314 (364)
+ +-++ -..+++..|++|-.++++.|...-...-+||.|
T Consensus 329 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~t~ee~~~~~k~g~k~~~~~~~~rrg 408 (564)
T KOG1990|consen 329 RLKLEFEKASSEKLTEAIFHKLEKAKKKLASANRILAKLEDPKIPAELRYDPESITEEERLMLRKVGLKMKRRLLSGRRG 408 (564)
T ss_pred hhhhhhhccchhhHHHHHHHHHhhhhhhccchhhhhhcccccccccccccchhhcChHHHHHHHHHHHhhccccccCCcc
Confidence 0 0000 013567799999999999999999999999999
Q ss_pred CCCchhHHHHHHhhhcceEEEeccCCCc-chhHHHHHhhhcccceeecc
Q 017893 315 YYGSLVPMVRDAFLVSELVRIDCQGLER-SDYKKIGCKLRSWFRISFLA 362 (364)
Q Consensus 315 ~~~~Lv~~V~~~we~s~ivKI~ckG~~~-sd~~kig~kLk~L~~~vll~ 362 (364)
++.|++.++..+|...+.+++.|+.-.. +.-+..|..|-.+-+++++.
T Consensus 409 ~f~g~i~n~~l~wk~~e~~k~i~~~~~~~~~~~~~a~~le~esg~~~v~ 457 (564)
T KOG1990|consen 409 VFDGVIENMHLHWKSRELVKVICKEKNLPSQVKQYASALERESGGILVS 457 (564)
T ss_pred cccceeecchhhhhhcccceeeeccccccHHHHHHHHHHHHHhCCceee
Confidence 9999999999999999999999995555 99999999999999888764
No 8
>TIGR00253 RNA_bind_YhbY putative RNA-binding protein, YhbY family. A combination of crystal structure, molecular modeling, and bioinformatic data together suggest that members of this family, including YhbY of E. coli, are RNA binding proteins.
Probab=97.85 E-value=4.1e-05 Score=64.06 Aligned_cols=73 Identities=16% Similarity=0.219 Sum_probs=68.3
Q ss_pred CCHHHHHHHHhCCCCCCceEEeccCCCCCchhHHHHHHhhhcceEEEeccCCCcchhHHHHHhhhcccceeec
Q 017893 289 LSIEETKEMRKRGLAVPVLTKLAKNGYYGSLVPMVRDAFLVSELVRIDCQGLERSDYKKIGCKLRSWFRISFL 361 (364)
Q Consensus 289 Ls~eE~telRr~g~~lp~~~kLgRNg~~~~Lv~~V~~~we~s~ivKI~ckG~~~sd~~kig~kLk~L~~~vll 361 (364)
||.++..++|..|..+.|++-.|+||.-.+++..|.++|+..||+||-+..-...|-+.++++|-+-++|.+.
T Consensus 1 Lt~kqr~~Lr~~ah~l~p~v~IGK~Glt~~vi~ei~~aL~~hELIKVkvl~~~~~~~~e~a~~i~~~~~a~~V 73 (95)
T TIGR00253 1 LTGKQKRHLRGKAHHLKPVVLVGKNGLTEGVIKEIEQALEHRELIKVKVATEDREDKTLIAEALVKETGACNV 73 (95)
T ss_pred CCHHHHHHHHHHhCCCCCeEEECCCCCCHHHHHHHHHHHHhCCcEEEEecCCChhHHHHHHHHHHHHHCCEEE
Confidence 6889999999999999999999999999999999999999999999999866678889999999999988775
No 9
>PRK10343 RNA-binding protein YhbY; Provisional
Probab=97.46 E-value=0.00036 Score=58.81 Aligned_cols=73 Identities=14% Similarity=0.152 Sum_probs=68.4
Q ss_pred CCHHHHHHHHhCCCCCCceEEeccCCCCCchhHHHHHHhhhcceEEEeccCCCcchhHHHHHhhhcccceeec
Q 017893 289 LSIEETKEMRKRGLAVPVLTKLAKNGYYGSLVPMVRDAFLVSELVRIDCQGLERSDYKKIGCKLRSWFRISFL 361 (364)
Q Consensus 289 Ls~eE~telRr~g~~lp~~~kLgRNg~~~~Lv~~V~~~we~s~ivKI~ckG~~~sd~~kig~kLk~L~~~vll 361 (364)
||.++..++|..|..+.|++-.|+||.-.+++..|.++.+..||+||-+..-...|-+.++++|-+-++|-+.
T Consensus 3 Lt~kqr~~LR~~ah~l~Pvv~IGk~Glt~~vi~ei~~aL~~hELIKvkv~~~~~~~~~e~~~~i~~~~~ae~V 75 (97)
T PRK10343 3 LSTKQKQHLKGLAHPLKPVVLLGSNGLTEGVLAEIEQALEHHELIKVKIATEDRETKTLIVEAIVRETGACNV 75 (97)
T ss_pred CCHHHHHHHHHhcCCCCCeEEECCCCCCHHHHHHHHHHHHHCCcEEEEecCCChhHHHHHHHHHHHHHCCEEE
Confidence 7889999999999999999999999999999999999999999999999877888889999999998888764
No 10
>COG1534 Predicted RNA-binding protein containing KH domain, possibly ribosomal protein [Translation, ribosomal structure and biogenesis]
Probab=96.50 E-value=0.007 Score=51.30 Aligned_cols=73 Identities=18% Similarity=0.272 Sum_probs=68.0
Q ss_pred CCHHHHHHHHhCCCCCCceEEeccCCCCCchhHHHHHHhhhcceEEEeccCCCcchhHHHHHhhhcccceeec
Q 017893 289 LSIEETKEMRKRGLAVPVLTKLAKNGYYGSLVPMVRDAFLVSELVRIDCQGLERSDYKKIGCKLRSWFRISFL 361 (364)
Q Consensus 289 Ls~eE~telRr~g~~lp~~~kLgRNg~~~~Lv~~V~~~we~s~ivKI~ckG~~~sd~~kig~kLk~L~~~vll 361 (364)
||.++..++|.++..+-|++-.|+||.-.++.+.|.++-+..+++||-+-+-...|=+.+|++|-+-++|.|.
T Consensus 2 Lt~kq~~~Lrs~Ah~l~piv~IGk~Glte~vi~Ei~~aL~~reLIKVkvl~~~~edr~eia~~l~~~~~a~lV 74 (97)
T COG1534 2 LTGKQKRFLRSKAHHLKPIVQIGKNGLTEGVIKEIDRALEARELIKVKVLQNAREDKKEIAEALAEETGAELV 74 (97)
T ss_pred CcHHHHHHHHHhhccCCceEEecCCccCHHHHHHHHHHHHhCCcEEEEeeccchhhHHHHHHHHHHHhCCEEe
Confidence 6889999999999999999999999999999999999999999999998777777999999999999988775
No 11
>PF04472 DUF552: Protein of unknown function (DUF552); InterPro: IPR007561 This entry represents a cell division protein, designated SepF, which is conserved in Gram-positive bacteria. SepF accumulates at the cell division site in an FtsZ-dependent manner and is required for proper septum formation []. Mutants are viable but the formation of the septum is much slower and occurs with a very abnormal morphology. This entry also includes archaeal related proteins of unknown function.; GO: 0000917 barrier septum formation; PDB: 3P04_A.
Probab=51.46 E-value=1.2e+02 Score=23.78 Aligned_cols=55 Identities=11% Similarity=0.096 Sum_probs=37.6
Q ss_pred HHHHHHHHHhCCeeEEEeCCCChHhHHHHHHHHHH---hcCCEEEEEECCEEEEEcCCC
Q 017893 202 LNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLED---KTFGKIIFRHGGTLVLYRGRN 257 (364)
Q Consensus 202 VeeI~~aLk~hELVKVK~l~~~~~dmkeiae~Lee---kTGg~VVq~IG~tiVLYRgkn 257 (364)
+.+|-++++....|-|.+..-..++.+++.+.|.. .++|.+.+. |+.++|+=|.+
T Consensus 12 ~~~i~~~l~~g~~Vivnl~~l~~~~~~Ri~Dfl~G~~~al~G~i~~i-~~~~~l~~P~~ 69 (73)
T PF04472_consen 12 AREIVDALREGKIVIVNLENLDDEEAQRILDFLSGAVYALDGDIQKI-SEKVFLLTPKG 69 (73)
T ss_dssp HHHHHHHHHTT--EEEE-TTS-HHHHHHHHHHHHHHHHHTT-EEEEE-ETTEEEEE---
T ss_pred HHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHhchheeeCCEEEEE-cCCEEEEECCC
Confidence 45688999999999999999888889999888876 668888776 55566665544
No 12
>PF03048 Herpes_UL92: UL92 family; InterPro: IPR004289 Members of this family are functionally uncharacterised proteins from herpesviruses. The N terminus of these proteins contain 6 conserved cysteines and histidines that might form a zinc binding domain.
Probab=50.72 E-value=9.5 Score=36.15 Aligned_cols=25 Identities=24% Similarity=0.501 Sum_probs=22.7
Q ss_pred ceEEeccCCCCCchhHHHHHHhhhc
Q 017893 306 VLTKLAKNGYYGSLVPMVRDAFLVS 330 (364)
Q Consensus 306 ~~~kLgRNg~~~~Lv~~V~~~we~s 330 (364)
-+||-+||..|+.++|.||.+|-..
T Consensus 167 ~lfKctrnKk~D~i~K~mR~~wm~~ 191 (192)
T PF03048_consen 167 LLFKCTRNKKYDSILKRMREEWMST 191 (192)
T ss_pred EEEEEeccchHHHHHHHHHHHHhhc
Confidence 4799999999999999999999653
No 13
>PF10369 ALS_ss_C: Small subunit of acetolactate synthase; InterPro: IPR019455 This entry represents the C-terminal domain of the small subunit of acetolactate synthase (the N-terminal domain being an ACT domain). Acetolactate synthase is a tetrameric enzyme, composed of two large and two small subunits, which catalyses the first step in branched-chain amino acid biosynthesis. This reaction is sensitive to certain herbicides []. ; PDB: 2F1F_B 2FGC_A 2PC6_A.
Probab=48.91 E-value=34 Score=27.20 Aligned_cols=36 Identities=11% Similarity=0.173 Sum_probs=22.6
Q ss_pred eeEEEeCCCChHhHHHHHHHHHHhcCCEEEEEECCEEEEE
Q 017893 214 AVRIKCLGVPTVDMKNVCFQLEDKTFGKIIFRHGGTLVLY 253 (364)
Q Consensus 214 LVKVK~l~~~~~dmkeiae~LeekTGg~VVq~IG~tiVLY 253 (364)
||||++.. .++ .-..+|++..+|.+|....+.+++=
T Consensus 6 LiKV~~~~---~~r-~ei~~l~~~f~a~ivd~~~~~~iie 41 (75)
T PF10369_consen 6 LIKVKATP---ENR-SEILQLAEIFRARIVDVSPDSIIIE 41 (75)
T ss_dssp EEEEE-SC---HHH-HHHHHHHHHTT-EEEEEETTEEEEE
T ss_pred EEEEECCc---cCH-HHHHHHHHHhCCEEEEECCCEEEEE
Confidence 45555522 333 3345578889999999988887764
No 14
>TIGR03264 met_CoM_red_C methyl-coenzyme M reductase I operon protein C. has several modified sites, so accessory proteins are expected. Several methanogens have encode two such enzymes, designated I and II; this protein occurs only operons of type I. The precise function is unknown.
Probab=47.14 E-value=35 Score=32.49 Aligned_cols=64 Identities=23% Similarity=0.339 Sum_probs=50.1
Q ss_pred CCCCHHHHHHHHhCCCCCCceEEeccCCCCCchhHHHHHHhhhcceEEE-ecc-CCCcchhHHHHHhhhcc
Q 017893 287 EGLSIEETKEMRKRGLAVPVLTKLAKNGYYGSLVPMVRDAFLVSELVRI-DCQ-GLERSDYKKIGCKLRSW 355 (364)
Q Consensus 287 eGLs~eE~telRr~g~~lp~~~kLgRNg~~~~Lv~~V~~~we~s~ivKI-~ck-G~~~sd~~kig~kLk~L 355 (364)
-||+.+|.+.+-+ -...+|.+|- .-.-.+.+++.+++...|=-| -|+ =++-.|+.|+|.|-+..
T Consensus 89 fgl~~~E~~qI~~---HklAV~h~GN--vk~hIi~K~r~ilr~vdIP~IiVcq~PvdfEdfak~GvkT~~v 154 (194)
T TIGR03264 89 FGLTPEEIEQINR---HKLAVIHLGN--VKSHIIYKARLILKHVDIPAIIVCQAPVDFEDFAKIGVKTRAV 154 (194)
T ss_pred cCCCHHHHHHHhh---cCEEEEEeCC--HHHHHHHHHHHHHhcCCCCEEEEeCCCcCHHHHHHhCcceeec
Confidence 3899999887755 3456677773 556678889999999998665 888 79999999999987753
No 15
>cd08619 PI-PLCXDc_plant Catalytic domain of phosphatidylinositol-specific phospholipase C, X domain containing proteins found in plants. The CD corresponds to the catalytic domain present in uncharacterized plant phosphatidylinositol-specific phospholipase C, X domain containing proteins (PI-PLCXD). The typical eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) has a multidomain organization that consists of a PLC catalytic core domain, and various regulatory domains. The catalytic core domain is assembled from two highly conserved X- and Y-regions split by a divergent linker sequence. In contrast, plant PI-PLCXDs contain a single TIM-barrel type catalytic domain, X domain, and are more closely related to bacterial PI-PLCs, which participate in Ca2+-independent PI metabolism, hydrolyzing the membrane lipid phosphatidylinositol (PI) to produce phosphorylated myo-inositol and diacylglycerol (DAG). Although the biological function of plant PI-PLCXDs still remains u
Probab=38.42 E-value=58 Score=32.62 Aligned_cols=62 Identities=16% Similarity=0.172 Sum_probs=45.9
Q ss_pred CHHHHHHHHHHHHhC--CeeEEEeCCCCh-HhHHHHHHHHHHhcCCEEEEEEC-------------CEEEEEcCCCCC
Q 017893 198 THNMLNDIHNHWKHA--EAVRIKCLGVPT-VDMKNVCFQLEDKTFGKIIFRHG-------------GTLVLYRGRNYN 259 (364)
Q Consensus 198 Td~VVeeI~~aLk~h--ELVKVK~l~~~~-~dmkeiae~LeekTGg~VVq~IG-------------~tiVLYRgknY~ 259 (364)
-++|+++|.+-|+.| |+|-+.+..... .+-.+..+.|.+..|..++.... .++|+|+...|.
T Consensus 93 ~~dvL~~i~~FL~~hp~EvVIL~~k~ey~~~~~~~~~~~li~~lGd~l~~~~~~~~~~TL~eL~~krVIviy~~~~~~ 170 (285)
T cd08619 93 VDVVLNDIKRFLSETKSEFVILEIRTEYGHEDPPQFDLWLVEQLGDHLIHQDDSVFSKTLAELLPKRVICIWKPRKSP 170 (285)
T ss_pred HHHHHHHHHHHHHHCCCeEEEEEEeecccCCCchHHHHHHHHHhcchhccCCCccccccHHHHhCCcEEEEEcCCCCC
Confidence 478999999999887 999999975432 22235667777888888876522 368899988774
No 16
>COG2390 DeoR Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]
Probab=33.07 E-value=1.4e+02 Score=30.33 Aligned_cols=52 Identities=13% Similarity=0.064 Sum_probs=40.6
Q ss_pred CCCCHHHHHHHHHHHHhCCeeEEEeCCCChHhHHHHHHHHHHhcCCEEEEEEC
Q 017893 195 DGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIFRHG 247 (364)
Q Consensus 195 ~GLTd~VVeeI~~aLk~hELVKVK~l~~~~~dmkeiae~LeekTGg~VVq~IG 247 (364)
=||+..+|..+=+.-+..++|||++. ....+.-++.++|+++.|-.=+++.-
T Consensus 36 LgiSR~~v~rlL~~Ar~~GiV~I~i~-~~~~~~~~Le~~L~~~fgL~~a~VVp 87 (321)
T COG2390 36 LGISRATVSRLLAKAREEGIVKISIN-SPVEGCLELEQQLKERFGLKEAIVVP 87 (321)
T ss_pred hCCCHHHHHHHHHHHHHCCeEEEEeC-CCCcchHHHHHHHHHhcCCCeEEEEc
Confidence 47888888888888888999999998 56667777888999988876444433
No 17
>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]
Probab=32.07 E-value=87 Score=31.90 Aligned_cols=75 Identities=15% Similarity=0.127 Sum_probs=54.4
Q ss_pred HHHHHHHhhhCCCCceEEeCCCCCCHHHHHHHHHHHHhCCeeEEEeCCCChHhHHHHHHHHHHhcCCEEEEE-ECCEEEE
Q 017893 174 RKALVEKCHRNRTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIFR-HGGTLVL 252 (364)
Q Consensus 174 Rk~LRk~Ah~~kLkPvV~IGK~GLTd~VVeeI~~aLk~hELVKVK~l~~~~~dmkeiae~LeekTGg~VVq~-IG~tiVL 252 (364)
+.+-+..|++ +++ +|.|++ |++=++.++..++...=|.|++...|-.+-+++.+.|++.+.+.-|.. +.++-..
T Consensus 63 KayA~eLAkr-G~n-vvLIsR---t~~KL~~v~kEI~~~~~vev~~i~~Dft~~~~~ye~i~~~l~~~~VgILVNNvG~~ 137 (312)
T KOG1014|consen 63 KAYARELAKR-GFN-VVLISR---TQEKLEAVAKEIEEKYKVEVRIIAIDFTKGDEVYEKLLEKLAGLDVGILVNNVGMS 137 (312)
T ss_pred HHHHHHHHHc-CCE-EEEEeC---CHHHHHHHHHHHHHHhCcEEEEEEEecCCCchhHHHHHHHhcCCceEEEEeccccc
Confidence 4566677775 788 999998 588888888777773339999887665555558888888888777765 5565555
Q ss_pred E
Q 017893 253 Y 253 (364)
Q Consensus 253 Y 253 (364)
|
T Consensus 138 ~ 138 (312)
T KOG1014|consen 138 Y 138 (312)
T ss_pred C
Confidence 5
No 18
>PRK02714 O-succinylbenzoate synthase; Provisional
Probab=31.26 E-value=86 Score=30.88 Aligned_cols=64 Identities=11% Similarity=0.112 Sum_probs=48.4
Q ss_pred HHHHHHHHhCCCCCCceEEeccCCCC--CchhHHHHHHhhhcceEEEecc-CCCcchhHHHHHhhhcc
Q 017893 291 IEETKEMRKRGLAVPVLTKLAKNGYY--GSLVPMVRDAFLVSELVRIDCQ-GLERSDYKKIGCKLRSW 355 (364)
Q Consensus 291 ~eE~telRr~g~~lp~~~kLgRNg~~--~~Lv~~V~~~we~s~ivKI~ck-G~~~sd~~kig~kLk~L 355 (364)
.+++.+++..|-+..+ +|+|.+... ...+++|++++-...-.+||++ |....+..+++..|.+|
T Consensus 123 ~~~a~~~~~~G~~~~K-vKvG~~~~~~d~~~v~air~~~g~~~~l~vDaN~~w~~~~A~~~~~~l~~l 189 (320)
T PRK02714 123 LQQWQTLWQQGYRTFK-WKIGVDPLEQELKIFEQLLERLPAGAKLRLDANGGLSLEEAKRWLQLCDRR 189 (320)
T ss_pred HHHHHHHHHcCCCEEE-EEECCCChHHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhhc
Confidence 3466777777877666 577765322 3457888888877777899997 88899999999999885
No 19
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=30.99 E-value=2.8e+02 Score=25.23 Aligned_cols=65 Identities=20% Similarity=0.236 Sum_probs=42.8
Q ss_pred CCCHHHHHHHHHHhhhCCCCc-eEEeCCCCCCHH-HHHHHHHHHHhCCeeEEEeCCCChHhHHHHHHHHHHhcC
Q 017893 168 PLTNAERKALVEKCHRNRTKR-QINLGRDGLTHN-MLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTF 239 (364)
Q Consensus 168 ~LT~kERk~LRk~Ah~~kLkP-vV~IGK~GLTd~-VVeeI~~aLk~hELVKVK~l~~~~~dmkeiae~LeekTG 239 (364)
.||++|+..++.... .-+. .+..|..|---. ++..|..+|+.++ .+|.+...... ++..|.+.+|
T Consensus 1 ~L~~~Q~~a~~~~l~--~~~~~~~l~G~aGtGKT~~l~~~~~~~~~~g-~~v~~~apT~~----Aa~~L~~~~~ 67 (196)
T PF13604_consen 1 TLNEEQREAVRAILT--SGDRVSVLQGPAGTGKTTLLKALAEALEAAG-KRVIGLAPTNK----AAKELREKTG 67 (196)
T ss_dssp -S-HHHHHHHHHHHH--CTCSEEEEEESTTSTHHHHHHHHHHHHHHTT---EEEEESSHH----HHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHh--cCCeEEEEEECCCCCHHHHHHHHHHHHHhCC-CeEEEECCcHH----HHHHHHHhhC
Confidence 489999999999976 2344 445598886443 5677999999988 77777665444 4444666665
No 20
>PRK12465 xylose isomerase; Provisional
Probab=30.75 E-value=25 Score=37.23 Aligned_cols=17 Identities=35% Similarity=0.696 Sum_probs=14.0
Q ss_pred CCCCCCCCCCCCccccc
Q 017893 116 KYSPFGPGRLEREWTGV 132 (364)
Q Consensus 116 ~~~pfgp~~~~r~wtg~ 132 (364)
---|||++|+.|||.+-
T Consensus 64 G~DpFG~~T~~rpw~~~ 80 (445)
T PRK12465 64 GADPFGPGTRAYPWDVG 80 (445)
T ss_pred CCCCCCCccCCCCcccC
Confidence 34599999999999754
No 21
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=29.28 E-value=2e+02 Score=28.38 Aligned_cols=60 Identities=8% Similarity=0.044 Sum_probs=43.0
Q ss_pred CCCCHHHHHHHHHHhhhCCCCceEEeCCCCCCHHHHHHHHHHHHhCCeeEEEeCCCChHhHHHHHHHH
Q 017893 167 EPLTNAERKALVEKCHRNRTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQL 234 (364)
Q Consensus 167 e~LT~kERk~LRk~Ah~~kLkPvV~IGK~GLTd~VVeeI~~aLk~hELVKVK~l~~~~~dmkeiae~L 234 (364)
..|.-+-++.+++.. --|+|.+|..|++++-+.++ -..++.||.+......+..+.+.++
T Consensus 185 ~~l~~~~L~~i~~~~----~iPlV~hG~SGI~~e~~~~~----i~~G~~kinv~T~i~~a~~~a~~~~ 244 (281)
T PRK06806 185 PNLRFDRLQEINDVV----HIPLVLHGGSGISPEDFKKC----IQHGIRKINVATATFNSVITAVNNL 244 (281)
T ss_pred CccCHHHHHHHHHhc----CCCEEEECCCCCCHHHHHHH----HHcCCcEEEEhHHHHHHHHHHHHHH
Confidence 456666666666654 27999999999999776653 5678999999876665555444444
No 22
>COG1098 VacB Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis]
Probab=28.27 E-value=46 Score=29.94 Aligned_cols=27 Identities=30% Similarity=0.653 Sum_probs=24.8
Q ss_pred CCHHHHHHHHHHHHhCCeeEEEeCCCC
Q 017893 197 LTHNMLNDIHNHWKHAEAVRIKCLGVP 223 (364)
Q Consensus 197 LTd~VVeeI~~aLk~hELVKVK~l~~~ 223 (364)
|+++.|++||++|.--+=|+|+|++.+
T Consensus 38 Ia~~fVkdI~d~L~vG~eV~vKVl~id 64 (129)
T COG1098 38 IADGFVKDIHDHLKVGQEVKVKVLDID 64 (129)
T ss_pred hhhhhHHhHHHHhcCCCEEEEEEEeec
Confidence 689999999999999999999999854
No 23
>PF01918 Alba: Alba; InterPro: IPR002775 Members of this family include the archaeal protein Alba and a number of eukaryotic proteins with no known function. The DNA/RNA-binding protein Alba binds double-stranded DNA tightly but without sequence specificity. It binds rRNA and mRNA in vivo, and may play a role in maintaining the structural and functional stability of RNA, and, perhaps, ribosomes. It is distributed uniformly and abundantly on the chromosome. Alba has been shown to bind DNA and affect DNA supercoiling in a temperature dependent manner []. It is regulated by acetylation (alba = acetylation lowers binding affinity) by the Sir2 protein. Alba is proposed to play a role in establishment or maintenance of chromatin architecture and thereby in transcription repression. For further information see [].; GO: 0003676 nucleic acid binding; PDB: 3TOE_B 3IAB_A 1NFJ_A 1NFH_B 2Q3V_B 1VM0_B 1NH9_A 1Y9X_A 3U6Y_C 2H9U_A ....
Probab=27.21 E-value=2.8e+02 Score=21.03 Aligned_cols=52 Identities=12% Similarity=0.066 Sum_probs=44.4
Q ss_pred eEEeCCCCCCHHHHHHHHHHH-----HhCCeeEEEeCCCChHhHHHHHHHHHHhcCC
Q 017893 189 QINLGRDGLTHNMLNDIHNHW-----KHAEAVRIKCLGVPTVDMKNVCFQLEDKTFG 240 (364)
Q Consensus 189 vV~IGK~GLTd~VVeeI~~aL-----k~hELVKVK~l~~~~~dmkeiae~LeekTGg 240 (364)
.|.|+++.=....++.+..+| ..++-|.|+-.|..-.-.-.+++.+.++.+.
T Consensus 2 ~I~V~~~~~~~~~v~~~~~~L~~~~~~~~~~V~l~g~G~aI~kaI~vaei~K~~~~~ 58 (70)
T PF01918_consen 2 EIYVSSNSPIKSYVKRALKLLEGRENGKNDEVVLKGRGKAISKAISVAEILKRRFGE 58 (70)
T ss_dssp EEEE-STS-HHHHHHHHHHHHT-TTHTTCSEEEEEEECCHHHHHHHHHHHHHHHTST
T ss_pred EEEECCCCCHHHHHHHHHHHHhhhhcCCCCEEEEEEEcHHHHHHHHHHHHHHHhhcC
Confidence 478888888899999999999 8899999999998888888999999999853
No 24
>cd08557 PI-PLCc_bacteria_like Catalytic domain of bacterial phosphatidylinositol-specific phospholipase C and similar proteins. This subfamily corresponds to the catalytic domain present in bacterial phosphatidylinositol-specific phospholipase C (PI-PLC, EC 4.6.1.13) and their sequence homologs found in eukaryota. Bacterial PI-PLCs participate in Ca2+-independent PI metabolism, hydrolyzing the membrane lipid phosphatidylinositol (PI) to produce phosphorylated myo-inositol and diacylglycerol (DAG). Although their precise physiological function remains unclear, bacterial PI-PLCs may function as virulence factors in some pathogenic bacteria. Bacterial PI-PLCs contain a single TIM-barrel type catalytic domain. Its catalytic mechanism is based on general base and acid catalysis utilizing two well conserved histidines, and consists of two steps, a phosphotransfer and a phosphodiesterase reaction. Eukaryotic homologs in this family are named as phosphatidylinositol-specific phospholipase C X
Probab=27.13 E-value=2e+02 Score=26.57 Aligned_cols=64 Identities=14% Similarity=0.079 Sum_probs=49.7
Q ss_pred CCCCHHHHHHHHHHHHh--CCeeEEEeCCCChH----hHHHHHHHHHHhcCCEEEE-------------EE-CCEEEEEc
Q 017893 195 DGLTHNMLNDIHNHWKH--AEAVRIKCLGVPTV----DMKNVCFQLEDKTFGKIIF-------------RH-GGTLVLYR 254 (364)
Q Consensus 195 ~GLTd~VVeeI~~aLk~--hELVKVK~l~~~~~----dmkeiae~LeekTGg~VVq-------------~I-G~tiVLYR 254 (364)
...-..++++|.+-+++ +|+|-|.+...... +-+.+.+.|.+..|..+.. .+ |+.+|+++
T Consensus 78 ~~~~~~vL~~i~~fl~~~p~E~vil~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ptL~el~~gK~vi~~~ 157 (271)
T cd08557 78 GQTLEDVLNEVKDFLDAHPSEVVILDLEHEYGGDNGEDHDELDALLRDVLGDPLYRPPVRAGGWPTLGELRAGKRVLLFY 157 (271)
T ss_pred cccHHHHHHHHHHHHHHCCCcEEEEEEEccCCCcchhhHHHHHHHHHHHhCccccCCccccCCCCcHHHHhcCCeEEEEE
Confidence 34568999999999998 59999999865443 3678888999888877663 24 99999998
Q ss_pred CCCC
Q 017893 255 GRNY 258 (364)
Q Consensus 255 gknY 258 (364)
...+
T Consensus 158 ~~~~ 161 (271)
T cd08557 158 FGGD 161 (271)
T ss_pred CCCc
Confidence 8654
No 25
>PF04019 DUF359: Protein of unknown function (DUF359); InterPro: IPR007164 This is family of archaebacterial proteins, which are about 170 amino acids in length. They have no known function. The most conserved portion of the protein contains the sequence GEEDL that may be important for its function.
Probab=26.66 E-value=1.8e+02 Score=25.55 Aligned_cols=51 Identities=14% Similarity=0.146 Sum_probs=44.4
Q ss_pred CCCCCCHHHHHHHHHHHHhCCeeEEEeCCCChHhHHHHHHHHHHhcCCEEEEE
Q 017893 193 GRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIFR 245 (364)
Q Consensus 193 GK~GLTd~VVeeI~~aLk~hELVKVK~l~~~~~dmkeiae~LeekTGg~VVq~ 245 (364)
-..-||++.++.|..++...+=+.|.+.| -+|+-.+...|..-.|+.|++-
T Consensus 42 PpG~It~el~~ai~~a~~~~~~~~I~V~G--EEDL~~lPail~aP~gs~V~YG 92 (121)
T PF04019_consen 42 PPGTITEELIEAIKKALESGKPVVIFVDG--EEDLAVLPAILYAPEGSVVLYG 92 (121)
T ss_pred CCCcccHHHHHHHHHHHhCCCCEEEEEeC--hHHHHHHHHHHhCCCCCEEEEC
Confidence 44679999999999999899999999988 4788999999998888888874
No 26
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=26.47 E-value=86 Score=29.55 Aligned_cols=63 Identities=17% Similarity=0.185 Sum_probs=44.3
Q ss_pred HHHHHHHhCCCCCCceEEeccCCC-CCchhHHHHHHhhhcceEEEecc-CCCcchhHHHHHhhhcc
Q 017893 292 EETKEMRKRGLAVPVLTKLAKNGY-YGSLVPMVRDAFLVSELVRIDCQ-GLERSDYKKIGCKLRSW 355 (364)
Q Consensus 292 eE~telRr~g~~lp~~~kLgRNg~-~~~Lv~~V~~~we~s~ivKI~ck-G~~~sd~~kig~kLk~L 355 (364)
+++.+.+..|-+..+ +|+|.+.. -...+++|++++-...-.++|++ |.+..+..+++..|.++
T Consensus 91 ~~~~~~~~~G~~~~K-iKvg~~~~~d~~~v~~vr~~~g~~~~l~vDan~~~~~~~a~~~~~~l~~~ 155 (265)
T cd03315 91 EEARRALEAGFRTFK-LKVGRDPARDVAVVAALREAVGDDAELRVDANRGWTPKQAIRALRALEDL 155 (265)
T ss_pred HHHHHHHHCCCCEEE-EecCCCHHHHHHHHHHHHHhcCCCCEEEEeCCCCcCHHHHHHHHHHHHhc
Confidence 345666677765555 45665421 13557888888866667799997 78888888999988874
No 27
>cd05797 Ribosomal_L10 Ribosomal protein L10 family, L10 subfamily; composed of bacterial 50S ribosomal protein and eukaryotic mitochondrial 39S ribosomal protein, L10. L10 occupies the L7/L12 stalk of the ribosome. The N-terminal domain (NTD) of L10 interacts with L11 protein and forms the base of the L7/L12 stalk, while the extended C-terminal helix binds to two or three dimers of the NTD of L7/L12 (L7 and L12 are identical except for an acetylated N-terminus). The L7/L12 stalk is known to contain the binding site for elongation factors G and Tu (EF-G and EF-Tu, respectively); however, there is disagreement as to whether or not L10 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, L10 has been shown to interact with the SH3 domain of Src and to activate the binding of the Nck1 adaptor protein with skeletal proteins such as the Wiskott-Aldrich Syndrome Protein (WASP) and the WASP-in
Probab=26.11 E-value=4.4e+02 Score=23.10 Aligned_cols=74 Identities=19% Similarity=0.196 Sum_probs=47.7
Q ss_pred HHHHHHHHhhhCCCCceEEeCCCCCCHHHHHHHHHHHHhCCeeEEEeCCCChHhHHHHHHHHHHhcCCEEE--EEECCEE
Q 017893 173 ERKALVEKCHRNRTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKII--FRHGGTL 250 (364)
Q Consensus 173 ERk~LRk~Ah~~kLkPvV~IGK~GLTd~VVeeI~~aLk~hELVKVK~l~~~~~dmkeiae~LeekTGg~VV--q~IG~ti 250 (364)
....++.... +.+-++-+.-+|+|-+-+.+++..|+.++ +++++..+ .+...--+.++-.-+ ...|.++
T Consensus 8 ~v~~l~~~l~--~~~~v~v~~~~gl~~~~~~~lR~~lr~~~-~~~~V~KN------tL~~~Al~~t~~~~l~~~l~G~~a 78 (157)
T cd05797 8 IVAELKEKLK--EAKSVVVADYRGLTVAQLTELRKELREAG-VKLKVVKN------TLAKRALEGTGFEDLDDLLKGPTA 78 (157)
T ss_pred HHHHHHHHHH--hCCEEEEEecCCCcHHHHHHHHHHHHHcC-CEEEEehh------HHHHHHHhcCCchhhHhhCcCCEE
Confidence 4556666665 46778889999999999999999999876 35555443 222222222332211 3578888
Q ss_pred EEEcC
Q 017893 251 VLYRG 255 (364)
Q Consensus 251 VLYRg 255 (364)
++|=.
T Consensus 79 l~f~~ 83 (157)
T cd05797 79 IAFSE 83 (157)
T ss_pred EEEeC
Confidence 88853
No 28
>PRK05474 xylose isomerase; Provisional
Probab=25.71 E-value=33 Score=36.35 Aligned_cols=16 Identities=38% Similarity=0.908 Sum_probs=13.5
Q ss_pred CCCCCCCCCCCccccc
Q 017893 117 YSPFGPGRLEREWTGV 132 (364)
Q Consensus 117 ~~pfgp~~~~r~wtg~ 132 (364)
=-|||++|+.|||...
T Consensus 55 ~DpFG~~T~~rpw~~~ 70 (437)
T PRK05474 55 ADPFGGGTFQRPWDQP 70 (437)
T ss_pred CCCCCCccccCCCcCC
Confidence 3589999999999854
No 29
>COG1514 LigT 2'-5' RNA ligase [Translation, ribosomal structure and biogenesis]
Probab=25.47 E-value=1.2e+02 Score=28.03 Aligned_cols=106 Identities=16% Similarity=0.074 Sum_probs=54.7
Q ss_pred eEEEeCCCCh-HhHHHHHHHHHHhcCC-EEEEEECCEEEEEcCCCCCCCCCCcccccccCCCCCCchhhhhhhcCCCCHH
Q 017893 215 VRIKCLGVPT-VDMKNVCFQLEDKTFG-KIIFRHGGTLVLYRGRNYNPKKRPVIPLMLWRPHEPVYPKLIKTTIEGLSIE 292 (364)
Q Consensus 215 VKVK~l~~~~-~dmkeiae~LeekTGg-~VVq~IG~tiVLYRgknY~~~~RP~iplmlwkp~~Pv~pklik~~~eGLs~e 292 (364)
|-++|++... ...+++++.|.+-... .+--...++-++-. +..+..+|-.... ...|.+++.+--+..
T Consensus 40 iTL~flGev~e~~~~~l~~~l~~i~~~~~f~i~l~g~g~F~~---------~~~~rvi~~~v~~-~~~L~~L~~~l~~~~ 109 (180)
T COG1514 40 ITLKFLGEVDEDKADELIEALARIAAPEPFPITLDGAGSFPN---------PRRPRVIWVGVEE-TEELRALAEELERAL 109 (180)
T ss_pred EEEEccCCcCchHHHHHHHHHHHhhcCCceEEEEeeEcccCC---------CCCCcEEEEcCCC-cHHHHHHHHHHHHHH
Confidence 4677887654 3455666666654443 22222223322222 2223456666654 333433322111111
Q ss_pred HHHHHHhCCCCCCceEEeccCCCCCchhHHHHHHhhhc
Q 017893 293 ETKEMRKRGLAVPVLTKLAKNGYYGSLVPMVRDAFLVS 330 (364)
Q Consensus 293 E~telRr~g~~lp~~~kLgRNg~~~~Lv~~V~~~we~s 330 (364)
..-.++...+.-.||+-|+|+.....++.++.+....+
T Consensus 110 ~~~g~~~~~r~F~PHvTl~r~k~~~~~~~~~~~~~~~~ 147 (180)
T COG1514 110 ARLGLRPEERPFVPHVTLARVKSKDKLVEALGEFKNVE 147 (180)
T ss_pred HhcCCCCCCCCcCCCEEEEeecccchhhhhhhhhcccc
Confidence 11112223678999999999998777777766655443
No 30
>PRK00099 rplJ 50S ribosomal protein L10; Reviewed
Probab=25.28 E-value=4.2e+02 Score=23.75 Aligned_cols=74 Identities=15% Similarity=0.150 Sum_probs=47.6
Q ss_pred HHHHHHHHhhhCCCCceEEeCCCCCCHHHHHHHHHHHHhCCeeEEEeCCCChHhHHHHHHHHHHhcCCEEE--EEECCEE
Q 017893 173 ERKALVEKCHRNRTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKII--FRHGGTL 250 (364)
Q Consensus 173 ERk~LRk~Ah~~kLkPvV~IGK~GLTd~VVeeI~~aLk~hELVKVK~l~~~~~dmkeiae~LeekTGg~VV--q~IG~ti 250 (364)
....++.... +.+-++-+.-+|+|-+-+.+|+..|+.++. +++|..+ .+...--+.++-+-+ ...|.++
T Consensus 9 ~v~~l~~~l~--~~~~v~v~~~~gl~~~~~~~lR~~lr~~~~-~~~V~KN------tL~~~Al~~~~~~~l~~~l~G~~a 79 (172)
T PRK00099 9 IVAELAEKLK--KAQSAVVADYRGLTVAQMTELRKKLREAGV-EYKVVKN------TLARRALEGTGFEGLDDLLKGPTA 79 (172)
T ss_pred HHHHHHHHHH--hCCEEEEEecCCCcHHHHHHHHHHHHHcCC-EEEEehh------HHHHHHHhcCCchhhhhhCcCCeE
Confidence 4566777776 467888999999999999999999998752 4444332 122222222232222 2678888
Q ss_pred EEEcC
Q 017893 251 VLYRG 255 (364)
Q Consensus 251 VLYRg 255 (364)
++|=.
T Consensus 80 l~fs~ 84 (172)
T PRK00099 80 IAFSY 84 (172)
T ss_pred EEEeC
Confidence 88853
No 31
>cd03318 MLE Muconate Lactonizing Enzyme (MLE), an homooctameric enzyme, catalyses the conversion of cis,cis-muconate (CCM) to muconolactone (ML) in the catechol branch of the beta-ketoadipate pathway. This pathway is used in soil microbes to breakdown lignin-derived aromatics, catechol and protocatechuate, to citric acid cycle intermediates. Some bacterial species are also capable of dehalogenating chloroaromatic compounds by the action of chloromuconate lactonizing enzymes (Cl-MLEs). MLEs are members of the enolase superfamily characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=25.27 E-value=1e+02 Score=30.54 Aligned_cols=62 Identities=19% Similarity=0.094 Sum_probs=44.1
Q ss_pred HHHHHHhCC-CCCCceEEeccCCC--CCchhHHHHHHhhhcceEEEecc-CCCcchhHHHHHhhhcc
Q 017893 293 ETKEMRKRG-LAVPVLTKLAKNGY--YGSLVPMVRDAFLVSELVRIDCQ-GLERSDYKKIGCKLRSW 355 (364)
Q Consensus 293 E~telRr~g-~~lp~~~kLgRNg~--~~~Lv~~V~~~we~s~ivKI~ck-G~~~sd~~kig~kLk~L 355 (364)
++.++...| -+..+ +|.|++.- -...+++||+.+....-..|||+ +....+..+++..|.++
T Consensus 149 ~~~~~~~~G~f~~~K-iKvg~~~~~~d~~~v~avr~~~g~~~~l~iDaN~~~~~~~A~~~~~~l~~~ 214 (365)
T cd03318 149 EAEEMLEAGRHRRFK-LKMGARPPADDLAHVEAIAKALGDRASVRVDVNQAWDESTAIRALPRLEAA 214 (365)
T ss_pred HHHHHHhCCCceEEE-EEeCCCChHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 445566677 55544 46675432 23457788899876667789997 78888899999999876
No 32
>PF14226 DIOX_N: non-haem dioxygenase in morphine synthesis N-terminal; PDB: 3OOX_A 1BK0_A 1IPS_B 1QIQ_A 1OC1_A 2Y86_A 2Y60_A 1W03_A 2VE1_A 1QJF_A ....
Probab=25.20 E-value=2.2e+02 Score=22.96 Aligned_cols=36 Identities=8% Similarity=0.109 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHhCCeeEEEeCCCChHhHHHHHHHH
Q 017893 199 HNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQL 234 (364)
Q Consensus 199 d~VVeeI~~aLk~hELVKVK~l~~~~~dmkeiae~L 234 (364)
..++++|+++++..+...|.-.+.+...++++.+..
T Consensus 14 ~~~~~~l~~A~~~~GFf~l~nhGi~~~l~~~~~~~~ 49 (116)
T PF14226_consen 14 EEVAEQLRDACEEWGFFYLVNHGIPQELIDRVFAAA 49 (116)
T ss_dssp HHHHHHHHHHHHHTSEEEEESSSSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCEEEEecccccchhhHHHHHHH
Confidence 467888888888888888888888777666666653
No 33
>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed
Probab=24.37 E-value=2.2e+02 Score=26.08 Aligned_cols=71 Identities=10% Similarity=0.047 Sum_probs=45.5
Q ss_pred CHHHHHHHHHHhhhCCCCceEEeCCCCCCHHHHHHHHHHHHhCCeeEEEeCCCChHhHHHHHHHHHHhcCCEEEEEECCE
Q 017893 170 TNAERKALVEKCHRNRTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIFRHGGT 249 (364)
Q Consensus 170 T~kERk~LRk~Ah~~kLkPvV~IGK~GLTd~VVeeI~~aLk~hELVKVK~l~~~~~dmkeiae~LeekTGg~VVq~IG~t 249 (364)
+++....+.++-+ ++-.++.|-.--=.+.| .+||+=||+..+. .+ ..-..+|++..+|.+|...-+.
T Consensus 53 ~~~~i~qi~kQl~--KLidV~~V~~~~~~~~v---------~rEl~LiKv~~~~-~~-r~~i~~i~~~f~a~ivdv~~~~ 119 (161)
T PRK11895 53 DEQVIEQITKQLN--KLIDVLKVVDLTEEAHV---------ERELALVKVRASG-EN-RAEILRLADIFRAKIVDVTPES 119 (161)
T ss_pred CHHHHHHHHHHHh--ccccEEEEEecCCcchh---------heEEEEEEEECCc-cc-HHHHHHHHHHhCCEEEEecCCE
Confidence 6778888888887 78888887542211111 2455555544422 22 2344567788899999998888
Q ss_pred EEEE
Q 017893 250 LVLY 253 (364)
Q Consensus 250 iVLY 253 (364)
+++=
T Consensus 120 ~~iE 123 (161)
T PRK11895 120 LTIE 123 (161)
T ss_pred EEEE
Confidence 7765
No 34
>TIGR02630 xylose_isom_A xylose isomerase. Members of this family are the enzyme xylose isomerase (5.3.1.5), which interconverts D-xylose and D-xylulose.
Probab=24.21 E-value=37 Score=35.93 Aligned_cols=15 Identities=47% Similarity=1.108 Sum_probs=12.7
Q ss_pred CCCCCCCCCCCcccc
Q 017893 117 YSPFGPGRLEREWTG 131 (364)
Q Consensus 117 ~~pfgp~~~~r~wtg 131 (364)
=-|||++|+.|||.+
T Consensus 54 ~DpFG~~T~~rpw~~ 68 (434)
T TIGR02630 54 GDPFGDGTADRPWDG 68 (434)
T ss_pred CCCCCCccCCCCCcc
Confidence 358999999999954
No 35
>COG1576 Uncharacterized conserved protein [Function unknown]
Probab=24.11 E-value=1.4e+02 Score=27.55 Aligned_cols=49 Identities=18% Similarity=0.314 Sum_probs=34.0
Q ss_pred hccCCCCCHHHHHHHHHHhhhCCCCceEEe-CCCCCCHHHHHHHHHHHHh
Q 017893 163 RIQGEPLTNAERKALVEKCHRNRTKRQINL-GRDGLTHNMLNDIHNHWKH 211 (364)
Q Consensus 163 eil~e~LT~kERk~LRk~Ah~~kLkPvV~I-GK~GLTd~VVeeI~~aLk~ 211 (364)
++-|+.+|++|...+-..-....-+=.+.| |-+|++++|.+.-+..|.-
T Consensus 74 d~~Gk~~sSe~fA~~l~~~~~~G~~i~f~IGG~~Gl~~~~~~~a~~~~sl 123 (155)
T COG1576 74 DIRGKALSSEEFADFLERLRDDGRDISFLIGGADGLSEAVKARADQVLSL 123 (155)
T ss_pred ecCCCcCChHHHHHHHHHHHhcCCeEEEEEeCcccCCHHHHHHHhhheec
Confidence 455789999988776554432121233344 5699999999999999874
No 36
>cd03320 OSBS o-Succinylbenzoate synthase (OSBS) catalyzes the conversion of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate (SHCHC) to 4-(2'-carboxyphenyl)-4-oxobutyrate (o-succinylbenzoate or OSB), a reaction in the menaquinone biosynthetic pathway. Menaquinone is an essential cofactor for anaerobic growth in eubacteria and some archaea. OSBS belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=23.85 E-value=1.2e+02 Score=28.74 Aligned_cols=63 Identities=16% Similarity=0.145 Sum_probs=46.3
Q ss_pred HHHHHHHhCCCCCCceEEeccCCCC--CchhHHHHHHhhhcceEEEecc-CCCcchhHHHHHhhhcc
Q 017893 292 EETKEMRKRGLAVPVLTKLAKNGYY--GSLVPMVRDAFLVSELVRIDCQ-GLERSDYKKIGCKLRSW 355 (364)
Q Consensus 292 eE~telRr~g~~lp~~~kLgRNg~~--~~Lv~~V~~~we~s~ivKI~ck-G~~~sd~~kig~kLk~L 355 (364)
+++..++..|-+-.+ +|+|++... ...+++|+++.-...-.++|++ +....+..+++..|.++
T Consensus 88 ~~~~~~~~~Gf~~~K-iKvg~~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~w~~~~A~~~~~~l~~~ 153 (263)
T cd03320 88 GEAKAAYGGGYRTVK-LKVGATSFEEDLARLRALREALPADAKLRLDANGGWSLEEALAFLEALAAG 153 (263)
T ss_pred HHHHHHHhCCCCEEE-EEECCCChHHHHHHHHHHHHHcCCCCeEEEeCCCCCCHHHHHHHHHhhccc
Confidence 445666666776666 577765422 3568888888876777789997 78888999999999874
No 37
>PF04530 Viral_Beta_CD: Viral Beta C/D like family; InterPro: IPR007617 This is a family of ssRNA positive-strand viral proteins. Conserved region is found in the Beta C and Beta D transcripts.
Probab=23.59 E-value=78 Score=28.31 Aligned_cols=21 Identities=29% Similarity=0.676 Sum_probs=18.8
Q ss_pred EEeCCCCCCHHHHHHHHHHHHh
Q 017893 190 INLGRDGLTHNMLNDIHNHWKH 211 (364)
Q Consensus 190 V~IGK~GLTd~VVeeI~~aLk~ 211 (364)
+++|..-|.++||+.|| ||.+
T Consensus 93 ik~~~~PIDP~VIaAIH-HwQk 113 (122)
T PF04530_consen 93 IKLAPVPIDPEVIAAIH-HWQK 113 (122)
T ss_pred EecCCCCCCHHHHHHHH-HHHh
Confidence 56899999999999999 8876
No 38
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=23.09 E-value=4.8e+02 Score=26.45 Aligned_cols=62 Identities=18% Similarity=0.226 Sum_probs=42.4
Q ss_pred CCceEEeCCCCCCH-HHHHHHHHHHHhCCeeEEEeCCC---Ch-HhHHHHHHHHHHhcCCEEEEEECC
Q 017893 186 TKRQINLGRDGLTH-NMLNDIHNHWKHAEAVRIKCLGV---PT-VDMKNVCFQLEDKTFGKIIFRHGG 248 (364)
Q Consensus 186 LkPvV~IGK~GLTd-~VVeeI~~aLk~hELVKVK~l~~---~~-~dmkeiae~LeekTGg~VVq~IG~ 248 (364)
.+.++.|+..++.. ++++.|.+.|+.+++--+.|.+. ++ ++.+++++.. ...++.+|--+|+
T Consensus 31 ~~~~livt~~~~~~~g~~~~v~~~L~~~~i~~~~f~~v~~np~~~~v~~~~~~~-~~~~~D~IiaiGG 97 (383)
T PRK09860 31 FTRTLIVTDNMLTKLGMAGDVQKALEERNIFSVIYDGTQPNPTTENVAAGLKLL-KENNCDSVISLGG 97 (383)
T ss_pred CCEEEEEcCcchhhCccHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHH-HHcCCCEEEEeCC
Confidence 46777787777754 47889999999888654555552 33 4555655554 4568888888887
No 39
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=22.88 E-value=3.2e+02 Score=27.17 Aligned_cols=59 Identities=10% Similarity=0.102 Sum_probs=41.9
Q ss_pred CCCHHHHHHHHHHhhhCCCCceEEeCCCCCCHHHHHHHHHHHHhCCeeEEEeCCCChHhHHHHHHH
Q 017893 168 PLTNAERKALVEKCHRNRTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQ 233 (364)
Q Consensus 168 ~LT~kERk~LRk~Ah~~kLkPvV~IGK~GLTd~VVeeI~~aLk~hELVKVK~l~~~~~dmkeiae~ 233 (364)
.|.-+-++++++..- --|+|.+|..|++++-+.++ -..++.||.+......+..+.+.+
T Consensus 187 ~l~~e~L~~i~~~~~---~iPlVlhGGSGi~~e~~~~~----i~~Gi~KiNv~T~i~~~~~~~~~~ 245 (293)
T PRK07315 187 GLDLDHLEKLTEAVP---GFPIVLHGGSGIPDDQIQEA----IKLGVAKVNVNTECQIAFANATRK 245 (293)
T ss_pred cCCHHHHHHHHHhcc---CCCEEEECCCCCCHHHHHHH----HHcCCCEEEEccHHHHHHHHHHHH
Confidence 477666666666641 26999999999999877654 467999999988766544444443
No 40
>KOG2335 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=22.59 E-value=1.3e+02 Score=31.25 Aligned_cols=53 Identities=13% Similarity=0.135 Sum_probs=39.3
Q ss_pred CCCHHHHHHHHHHHHhCCeeEEEeCCCChHhHHHHHHHHHHhcCCEEEEEECCEE
Q 017893 196 GLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIFRHGGTL 250 (364)
Q Consensus 196 GLTd~VVeeI~~aLk~hELVKVK~l~~~~~dmkeiae~LeekTGg~VVq~IG~ti 250 (364)
-|..++|..|+..+..-=-+|||+..+.-...+.+ . ..+.+|+..+.+.|++-
T Consensus 127 eLv~e~V~~v~~~l~~pVs~KIRI~~d~~kTvd~a-k-~~e~aG~~~ltVHGRtr 179 (358)
T KOG2335|consen 127 ELVGEMVSAVRANLNVPVSVKIRIFVDLEKTVDYA-K-MLEDAGVSLLTVHGRTR 179 (358)
T ss_pred HHHHHHHHHHHhhcCCCeEEEEEecCcHHHHHHHH-H-HHHhCCCcEEEEecccH
Confidence 45678888888888888778999987654444443 3 45569999999999863
No 41
>cd05795 Ribosomal_P0_L10e Ribosomal protein L10 family, P0 and L10e subfamily; composed of eukaryotic 60S ribosomal protein P0 and the archaeal P0 homolog, L10e. P0 or L10e forms a tight complex with multiple copies of the small acidic protein L12(e). This complex forms a stalk structure on the large subunit of the ribosome. The stalk is known to contain the binding site for elongation factors G and Tu (EF-G and EF-Tu, respectively); however, there is disagreement as to whether or not L10 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, L10 has been shown to interact with the SH3 domain of Src and to activate the binding of the Nck1 adaptor protein with skeletal proteins such as the Wiskott-Aldrich Syndrome Protein (WASP) and the WASP-interacting protein (WIP). These eukaryotic and archaeal P0 sequences have an additional C-terminal domain homologous with acidic proteins P1 and P2.
Probab=22.26 E-value=2.8e+02 Score=25.22 Aligned_cols=47 Identities=13% Similarity=0.072 Sum_probs=37.6
Q ss_pred HHHHHHHHHhhhCCCCceEEeCCCCCCHHHHHHHHHHHHhCCeeEEEeCCC
Q 017893 172 AERKALVEKCHRNRTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGV 222 (364)
Q Consensus 172 kERk~LRk~Ah~~kLkPvV~IGK~GLTd~VVeeI~~aLk~hELVKVK~l~~ 222 (364)
+....|+.... +.+-++-+.-+|++-+-+.+|+..|+.. +++++..+
T Consensus 5 ~~v~el~e~l~--~~~~v~v~~~~gl~~~ql~~lR~~lr~~--~~~~v~KN 51 (175)
T cd05795 5 EYVEKLTELLK--SYPKVLIVDADNVGSKQLQKIRRSLRGK--AEILMGKN 51 (175)
T ss_pred HHHHHHHHHHH--hCCEEEEEEecCCChHHHHHHHHHhhCC--CEEEEech
Confidence 45667788776 5788899999999999999999999975 56666443
No 42
>PF01188 MR_MLE: Mandelate racemase / muconate lactonizing enzyme, C-terminal domain; InterPro: IPR013342 Mandelate racemase 5.1.2.2 from EC (MR) and muconate lactonising enzyme 5.5.1.1 from EC (MLE) are two bacterial enzymes involved in aromatic acid catabolism. They catalyse mechanistically distinct reactions yet they are related at the level of their primary, quaternary (homooctamer) and tertiary structures [, ]. A number of other proteins also seem to be evolutionary related to these two enzymes. These include, various plasmid-encoded chloromuconate cycloisomerases 5.5.1.7 from EC, Escherichia coli protein rspA [], E. coli bifunctional DGOA protein, E. coli hypothetical proteins ycjG, yfaW and yidU and a hypothetical protein from Streptomyces ambofaciens []. This entry represents the C-terminal region of these proteins.; PDB: 3QLD_B 3CYJ_C 2QDD_B 3FVD_A 3H7V_A 2OZT_A 3NXL_A 1JDF_D 1JCT_B 1EC9_C ....
Probab=22.12 E-value=1.3e+02 Score=22.83 Aligned_cols=36 Identities=14% Similarity=0.187 Sum_probs=28.3
Q ss_pred hHHHHHHhhhcceEEEecc-CCCcchhHHHHHhhhcc
Q 017893 320 VPMVRDAFLVSELVRIDCQ-GLERSDYKKIGCKLRSW 355 (364)
Q Consensus 320 v~~V~~~we~s~ivKI~ck-G~~~sd~~kig~kLk~L 355 (364)
+++|+++.-...-..|||. +.+..+..+++..|.++
T Consensus 2 i~avr~~~g~~~~l~vDan~~~~~~~a~~~~~~l~~~ 38 (67)
T PF01188_consen 2 IRAVREAVGPDIDLMVDANQAWTLEEAIRLARALEDY 38 (67)
T ss_dssp HHHHHHHHSTTSEEEEE-TTBBSHHHHHHHHHHHGGG
T ss_pred HHHHHHhhCCCCeEEEECCCCCCHHHHHHHHHHcChh
Confidence 5788888766777889997 77778889999998884
No 43
>PF12558 DUF3744: ATP-binding cassette cobalt transporter; InterPro: IPR022216 This domain family is found in bacteria, and is approximately 70 amino acids in length. The family is found in association with PF00005 from PFAM. There is a conserved REP sequence motif. There is a single completely conserved residue P that may be functionally important. The proteins in this family are frequently annotated as ABC Cobalt transporters however there is little accompanying literature to confirm this. ; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances
Probab=21.39 E-value=27 Score=27.78 Aligned_cols=10 Identities=50% Similarity=0.873 Sum_probs=8.0
Q ss_pred CccccCCCCC
Q 017893 109 PIGLREPKYS 118 (364)
Q Consensus 109 p~~~re~~~~ 118 (364)
-+|+|||-|.
T Consensus 7 ~~GIREPLYi 16 (74)
T PF12558_consen 7 QNGIREPLYI 16 (74)
T ss_pred hcCCCccHHH
Confidence 4689999886
No 44
>cd00379 Ribosomal_L10_P0 Ribosomal protein L10 family; composed of the large subunit ribosomal protein called L10 in bacteria, P0 in eukaryotes, and L10e in archaea, as well as uncharacterized P0-like eukaryotic proteins. In all three kingdoms, L10 forms a tight complex with multiple copies of the small acidic protein L12(e). This complex forms a stalk structure on the large subunit of the ribosome. The N-terminal domain (NTD) of L10 interacts with L11 protein and forms the base of the L7/L12 stalk, while the extended C-terminal helix binds to two or three dimers of the NTD of L7/L12 (L7 and L12 are identical except for an acetylated N-terminus). The L7/L12 stalk is known to contain the binding site for elongation factors G and Tu (EF-G and EF-Tu, respectively); however, there is disagreement as to whether or not L10 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, L10 has been sho
Probab=20.59 E-value=5.5e+02 Score=22.02 Aligned_cols=74 Identities=15% Similarity=0.130 Sum_probs=48.9
Q ss_pred HHHHHHHHhhhCCCCceEEeCCCCCCHHHHHHHHHHHHhCCeeEEEeCCCChHhHHHHHHHHHHhcCCEEE--EEECCEE
Q 017893 173 ERKALVEKCHRNRTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKII--FRHGGTL 250 (364)
Q Consensus 173 ERk~LRk~Ah~~kLkPvV~IGK~GLTd~VVeeI~~aLk~hELVKVK~l~~~~~dmkeiae~LeekTGg~VV--q~IG~ti 250 (364)
..+.++.... +.+-++-+--+|++.+-+.+|+..|..++ ++++|..+. +...--+.++-+-+ ...|.++
T Consensus 6 ~v~~l~~~l~--~~~~v~v~~~~~l~~~~~~~lR~~l~~~~-~~~~v~KNt------l~~~Al~~t~~~~~~~~l~G~~~ 76 (155)
T cd00379 6 LVEELKELLK--KYKSVVVVDYRGLTVAQLTELRKELRESG-AKLKVGKNT------LMRRALKGTGFEELKPLLKGPTA 76 (155)
T ss_pred HHHHHHHHHH--hCCEEEEEecCCCcHHHHHHHHHHHHHcC-CEEEEEehH------HHHHHHcCCCccchhhhCcCCEE
Confidence 4567777776 46778888889999999999999998875 566665532 22222222221111 5788898
Q ss_pred EEEcC
Q 017893 251 VLYRG 255 (364)
Q Consensus 251 VLYRg 255 (364)
++|=.
T Consensus 77 ~~f~~ 81 (155)
T cd00379 77 LAFTN 81 (155)
T ss_pred EEEeC
Confidence 88843
No 45
>cd07766 DHQ_Fe-ADH Dehydroquinate synthase-like (DHQ-like) and iron-containing alcohol dehydrogenases (Fe-ADH). Dehydroquinate synthase-like. This superfamily divides into two subgroups: the dehydroquinate synthase-like, and a large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. Dehydroquinate synthase-like group includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. The alcohol dehydrogenases in this superfamily contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alc
Probab=20.51 E-value=6.3e+02 Score=24.47 Aligned_cols=60 Identities=10% Similarity=0.204 Sum_probs=38.0
Q ss_pred CCceEEeCCCCCCHHHHHHHHHHHHhCCeeEEEeCC-----CChHhHHHHHHHHHHhcCCEEEEEECC
Q 017893 186 TKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLG-----VPTVDMKNVCFQLEDKTFGKIIFRHGG 248 (364)
Q Consensus 186 LkPvV~IGK~GLTd~VVeeI~~aLk~hELVKVK~l~-----~~~~dmkeiae~LeekTGg~VVq~IG~ 248 (364)
.+..+.|...++.+...+.|.+.|+.+ +.+.+.. ...++.+++++.+.+ .++.+|--+|+
T Consensus 23 ~~~~liv~~~~~~~~~~~~v~~~l~~~--~~~~~~~~~~~~p~~~~v~~~~~~~~~-~~~d~IIaiGG 87 (332)
T cd07766 23 FDRALVVSDEGVVKGVGEKVADSLKKL--IAVHIFDGVGPNPTFEEVKEAVERARA-AEVDAVIAVGG 87 (332)
T ss_pred CCeEEEEeCCchhhhHHHHHHHHHHhc--CcEEEeCCcCCCcCHHHHHHHHHHHHh-cCcCEEEEeCC
Confidence 356677777777778888888888876 4443332 233456666666665 45555555555
No 46
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=20.14 E-value=1.5e+02 Score=28.67 Aligned_cols=62 Identities=19% Similarity=0.212 Sum_probs=43.2
Q ss_pred HHHHHHHhCCCCCCceEEeccCC-CCCchhHHHHHHhhhcceEEEecc-CCCcchhHHHHHhhhcc
Q 017893 292 EETKEMRKRGLAVPVLTKLAKNG-YYGSLVPMVRDAFLVSELVRIDCQ-GLERSDYKKIGCKLRSW 355 (364)
Q Consensus 292 eE~telRr~g~~lp~~~kLgRNg-~~~~Lv~~V~~~we~s~ivKI~ck-G~~~sd~~kig~kLk~L 355 (364)
+++.++...|-+-.. +|.|.+- .-...+++|++++- ..-..+||+ |.+..+..+++..|.++
T Consensus 140 ~~~~~~~~~Gf~~iK-ik~g~~~~~d~~~v~~lr~~~g-~~~l~vD~n~~~~~~~A~~~~~~l~~~ 203 (316)
T cd03319 140 AAAKKAAKRGFPLLK-IKLGGDLEDDIERIRAIREAAP-DARLRVDANQGWTPEEAVELLRELAEL 203 (316)
T ss_pred HHHHHHHHcCCCEEE-EEeCCChhhHHHHHHHHHHhCC-CCeEEEeCCCCcCHHHHHHHHHHHHhc
Confidence 345666677765555 4455331 12355778888887 667899997 88888899999998875
Done!