Query 017893
Match_columns 364
No_of_seqs 178 out of 764
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 06:37:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017893.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017893hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1jo0_A Hypothetical protein HI 100.0 4.6E-29 1.6E-33 206.1 13.1 87 168-256 2-88 (98)
2 1rq8_A Conserved hypothetical 100.0 6E-29 2E-33 207.7 13.7 88 168-257 1-88 (104)
3 1jo0_A Hypothetical protein HI 98.4 2.5E-07 8.6E-12 76.3 5.1 73 289-361 3-75 (98)
4 1rq8_A Conserved hypothetical 98.2 1.3E-06 4.3E-11 73.0 5.9 73 289-361 2-74 (104)
5 3ka5_A Ribosome-associated pro 47.9 51 0.0017 25.2 6.3 47 213-259 1-50 (65)
6 3p04_A Uncharacterized BCR; SE 32.4 1.9E+02 0.0064 23.0 8.0 56 203-259 19-77 (87)
7 2h9u_A DNA/RNA-binding protein 32.2 1.1E+02 0.0038 24.9 6.4 65 187-251 6-74 (102)
8 3lyv_A Ribosome-associated fac 28.8 60 0.0021 24.8 4.0 47 213-259 2-51 (66)
9 3k2t_A LMO2511 protein; lister 28.7 56 0.0019 24.2 3.7 46 214-259 2-50 (57)
10 3dg3_A Muconate cycloisomerase 25.2 72 0.0025 30.3 4.7 61 294-355 147-211 (367)
11 3i6e_A Muconate cycloisomerase 24.6 68 0.0023 30.8 4.5 61 293-355 155-218 (385)
12 3sbf_A Mandelate racemase / mu 23.0 1.2E+02 0.0041 29.2 5.9 61 294-355 141-227 (401)
13 3jva_A Dipeptide epimerase; en 22.0 66 0.0023 30.4 3.8 62 293-355 146-209 (354)
14 3my9_A Muconate cycloisomerase 21.6 92 0.0031 29.7 4.7 61 294-355 154-217 (377)
15 1nfj_A ALBA, conserved hypothe 21.5 2.4E+02 0.0082 22.2 6.4 57 187-244 3-61 (89)
16 3tji_A Mandelate racemase/muco 21.3 1.2E+02 0.0041 29.6 5.6 61 294-355 162-248 (422)
No 1
>1jo0_A Hypothetical protein HI1333; structural genomics, YHBY_HAEI structure 2 function project, S2F, unknown function; 1.37A {Haemophilus influenzae} SCOP: d.68.4.1 PDB: 1ln4_A
Probab=99.96 E-value=4.6e-29 Score=206.11 Aligned_cols=87 Identities=25% Similarity=0.374 Sum_probs=85.5
Q ss_pred CCCHHHHHHHHHHhhhCCCCceEEeCCCCCCHHHHHHHHHHHHhCCeeEEEeCCCChHhHHHHHHHHHHhcCCEEEEEEC
Q 017893 168 PLTNAERKALVEKCHRNRTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIFRHG 247 (364)
Q Consensus 168 ~LT~kERk~LRk~Ah~~kLkPvV~IGK~GLTd~VVeeI~~aLk~hELVKVK~l~~~~~dmkeiae~LeekTGg~VVq~IG 247 (364)
.||++|+++||+.|| +|+|+|+|||+|||++|+++|+++|++||||||+|++++.+|+++++++|+++|||++||+||
T Consensus 2 ~Lt~kqr~~Lr~~ah--~l~pvv~IGk~GlT~~vi~ei~~aL~~~ELIKVkvl~~~~~~~~e~a~~la~~t~a~~Vq~IG 79 (98)
T 1jo0_A 2 TLSTKQKQFLKGLAH--HLNPVVMLGGNGLTEGVLAEIENALNHHELIKVKVAGADRETKQLIINAIVRETKAAQVQTIG 79 (98)
T ss_dssp CCCHHHHHHHHHHHT--TBCCSEEECTTCSCHHHHHHHHHHHHHHSEEEEEETTCCHHHHHHHHHHHHHHHCCEEEEEET
T ss_pred CCCHHHHHHHHHHhc--CCCCeEEECCCCCCHHHHHHHHHHHHHCCeEEEEEeCCCHHHHHHHHHHHHHHhCCEEEEEEC
Confidence 699999999999999 699999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEcCC
Q 017893 248 GTLVLYRGR 256 (364)
Q Consensus 248 ~tiVLYRgk 256 (364)
+++||||++
T Consensus 80 ~~~vLyR~~ 88 (98)
T 1jo0_A 80 HILVLYRPS 88 (98)
T ss_dssp TEEEEECCC
T ss_pred CEEEEEccC
Confidence 999999986
No 2
>1rq8_A Conserved hypothetical protein; structural genomics, SAV1595, YHBY, UPF0044, unknown function; NMR {Staphylococcus aureus} SCOP: d.68.4.1
Probab=99.96 E-value=6e-29 Score=207.68 Aligned_cols=88 Identities=22% Similarity=0.395 Sum_probs=86.2
Q ss_pred CCCHHHHHHHHHHhhhCCCCceEEeCCCCCCHHHHHHHHHHHHhCCeeEEEeCCCChHhHHHHHHHHHHhcCCEEEEEEC
Q 017893 168 PLTNAERKALVEKCHRNRTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIFRHG 247 (364)
Q Consensus 168 ~LT~kERk~LRk~Ah~~kLkPvV~IGK~GLTd~VVeeI~~aLk~hELVKVK~l~~~~~dmkeiae~LeekTGg~VVq~IG 247 (364)
+||++||++||+.|| +|+|+|+|||+|||++|+++|+++|++||||||+|++++.+|+++++++|+++|||++||+||
T Consensus 1 mLt~kqr~~LR~~ah--~Lkpvv~IGK~GlTe~vi~ei~~aL~~hELIKVkvl~~~~~d~~e~a~~la~~t~a~vVq~IG 78 (104)
T 1rq8_A 1 MLTGKQKRYLRSLAH--NIDPIFQIGKGGINENMIKQIDDTLENRELIKVHVLQNNFDDKKELAETLSEATRSELVQVIG 78 (104)
T ss_dssp CCCHHHHHHHHHHTT--SSCCSCEECSSSCCHHHHHHHHHHHHHSSEEEEEECCCCHHHHHHHHHHHHHHHTEEEEEEET
T ss_pred CCCHHHHHHHHHHhc--CCCCeEEECCCCCCHHHHHHHHHHHHHCCcEEEEEeCCCHHHHHHHHHHHHHHhCCEEEEEEC
Confidence 699999999999999 699999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEcCCC
Q 017893 248 GTLVLYRGRN 257 (364)
Q Consensus 248 ~tiVLYRgkn 257 (364)
+++||||++.
T Consensus 79 ~~~VLYR~~~ 88 (104)
T 1rq8_A 79 SMIVIYRESK 88 (104)
T ss_dssp TEEEEEECCC
T ss_pred CEEEEEeCCC
Confidence 9999999976
No 3
>1jo0_A Hypothetical protein HI1333; structural genomics, YHBY_HAEI structure 2 function project, S2F, unknown function; 1.37A {Haemophilus influenzae} SCOP: d.68.4.1 PDB: 1ln4_A
Probab=98.40 E-value=2.5e-07 Score=76.29 Aligned_cols=73 Identities=15% Similarity=0.206 Sum_probs=70.3
Q ss_pred CCHHHHHHHHhCCCCCCceEEeccCCCCCchhHHHHHHhhhcceEEEeccCCCcchhHHHHHhhhcccceeec
Q 017893 289 LSIEETKEMRKRGLAVPVLTKLAKNGYYGSLVPMVRDAFLVSELVRIDCQGLERSDYKKIGCKLRSWFRISFL 361 (364)
Q Consensus 289 Ls~eE~telRr~g~~lp~~~kLgRNg~~~~Lv~~V~~~we~s~ivKI~ckG~~~sd~~kig~kLk~L~~~vll 361 (364)
||.+|..++|..|..+.|++-+|+||.-.++++.|.++|+..||+||-|.+....|-+.|+++|-+.++|.+.
T Consensus 3 Lt~kqr~~Lr~~ah~l~pvv~IGk~GlT~~vi~ei~~aL~~~ELIKVkvl~~~~~~~~e~a~~la~~t~a~~V 75 (98)
T 1jo0_A 3 LSTKQKQFLKGLAHHLNPVVMLGGNGLTEGVLAEIENALNHHELIKVKVAGADRETKQLIINAIVRETKAAQV 75 (98)
T ss_dssp CCHHHHHHHHHHHTTBCCSEEECTTCSCHHHHHHHHHHHHHHSEEEEEETTCCHHHHHHHHHHHHHHHCCEEE
T ss_pred CCHHHHHHHHHHhcCCCCeEEECCCCCCHHHHHHHHHHHHHCCeEEEEEeCCCHHHHHHHHHHHHHHhCCEEE
Confidence 7899999999999999999999999999999999999999999999999998899999999999999998764
No 4
>1rq8_A Conserved hypothetical protein; structural genomics, SAV1595, YHBY, UPF0044, unknown function; NMR {Staphylococcus aureus} SCOP: d.68.4.1
Probab=98.24 E-value=1.3e-06 Score=72.98 Aligned_cols=73 Identities=15% Similarity=0.244 Sum_probs=69.8
Q ss_pred CCHHHHHHHHhCCCCCCceEEeccCCCCCchhHHHHHHhhhcceEEEeccCCCcchhHHHHHhhhcccceeec
Q 017893 289 LSIEETKEMRKRGLAVPVLTKLAKNGYYGSLVPMVRDAFLVSELVRIDCQGLERSDYKKIGCKLRSWFRISFL 361 (364)
Q Consensus 289 Ls~eE~telRr~g~~lp~~~kLgRNg~~~~Lv~~V~~~we~s~ivKI~ckG~~~sd~~kig~kLk~L~~~vll 361 (364)
||.++..++|..|..+.|++-+|+||.-.++++.|.++|+..||+||-|.+....|-+.++++|-+.++|.+.
T Consensus 2 Lt~kqr~~LR~~ah~Lkpvv~IGK~GlTe~vi~ei~~aL~~hELIKVkvl~~~~~d~~e~a~~la~~t~a~vV 74 (104)
T 1rq8_A 2 LTGKQKRYLRSLAHNIDPIFQIGKGGINENMIKQIDDTLENRELIKVHVLQNNFDDKKELAETLSEATRSELV 74 (104)
T ss_dssp CCHHHHHHHHHHTTSSCCSCEECSSSCCHHHHHHHHHHHHHSSEEEEEECCCCHHHHHHHHHHHHHHHTEEEE
T ss_pred CCHHHHHHHHHHhcCCCCeEEECCCCCCHHHHHHHHHHHHHCCcEEEEEeCCCHHHHHHHHHHHHHHhCCEEE
Confidence 7899999999999999999999999999999999999999999999999988889999999999999998774
No 5
>3ka5_A Ribosome-associated protein Y (PSRP-1); structural genomics, PSI-2, protein structure initiative; 1.80A {Clostridium acetobutylicum}
Probab=47.93 E-value=51 Score=25.19 Aligned_cols=47 Identities=17% Similarity=0.330 Sum_probs=37.7
Q ss_pred CeeEEEeCCCChHhHHHHHHHHHHhcCCEEEEEE---CCEEEEEcCCCCC
Q 017893 213 EAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIFRH---GGTLVLYRGRNYN 259 (364)
Q Consensus 213 ELVKVK~l~~~~~dmkeiae~LeekTGg~VVq~I---G~tiVLYRgknY~ 259 (364)
++|+.|-......+.++++.+++-.-.--+|-+. |.+-|+||.++.+
T Consensus 1 ~iVr~K~~~~kpMsveEAv~qmel~gh~F~vF~n~etg~~nVVYRR~dG~ 50 (65)
T 3ka5_A 1 EIVKTKRFAIKPMSEEEAVLEMELLGHNFFVFQNGDSNEVNVVYKRKDGN 50 (65)
T ss_dssp CEEEEECSCCSCBCHHHHHHHHHHHTCSEEEEEETTTTEEEEEEECTTSC
T ss_pred CeEEEEeecCCCCCHHHHHHHHHhCCCcEEEEEeCCCCCEEEEEEeCCCC
Confidence 5788888888889999999999987666666665 6789999987654
No 6
>3p04_A Uncharacterized BCR; SEPF homolog, DUF552, PSI-biology, NESG, structural genomics structure initiative; 2.20A {Corynebacterium glutamicum}
Probab=32.41 E-value=1.9e+02 Score=22.98 Aligned_cols=56 Identities=11% Similarity=0.055 Sum_probs=46.2
Q ss_pred HHHHHHHHhCCeeEEEeCCCChHhHHHHHHHHHH---hcCCEEEEEECCEEEEEcCCCCC
Q 017893 203 NDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLED---KTFGKIIFRHGGTLVLYRGRNYN 259 (364)
Q Consensus 203 eeI~~aLk~hELVKVK~l~~~~~dmkeiae~Lee---kTGg~VVq~IG~tiVLYRgknY~ 259 (364)
.+|-++|+....|-|.+.+-+.++.+++.+-+.- .++|.+ +++|+.++|+=+.|.+
T Consensus 19 ~~I~d~Lr~~~~VvvNL~~ld~~~AqRivDF~sG~~yal~G~i-~kI~~~IFl~~P~~V~ 77 (87)
T 3p04_A 19 QVIGGAFRDGDAVVFDMSLLSREEARRIVDFAAGLCFALHGKM-QKIDSVTFAVVPELSN 77 (87)
T ss_dssp HHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHHHHHTTCEE-EEEETTEEEEECCCCC
T ss_pred HHHHHHHHCCCEEEEECCCCCHHHHHHHHHHhccceEEeccEE-EEEcCCEEEEECCCeE
Confidence 5899999999999999999999999999998886 457765 5567777777777664
No 7
>2h9u_A DNA/RNA-binding protein ALBA 2; archaea, DNA binding protein, structural G NPPSFA, national project on protein structural and function analyses; 2.00A {Aeropyrum pernix} PDB: 3u6y_A*
Probab=32.23 E-value=1.1e+02 Score=24.89 Aligned_cols=65 Identities=11% Similarity=0.111 Sum_probs=49.6
Q ss_pred CceEEeCCCCCCHHHHHHHHHHHHh-CCeeEEEeCCCChHhHHHHHHHHHHhc-CCEEEE--EECCEEE
Q 017893 187 KRQINLGRDGLTHNMLNDIHNHWKH-AEAVRIKCLGVPTVDMKNVCFQLEDKT-FGKIIF--RHGGTLV 251 (364)
Q Consensus 187 kPvV~IGK~GLTd~VVeeI~~aLk~-hELVKVK~l~~~~~dmkeiae~LeekT-Gg~VVq--~IG~tiV 251 (364)
...|.||+.|+..-|...+...|+. +.=|.|+-.|..-...-.+++.|.++. +|.-|+ .+|...+
T Consensus 6 ~n~I~V~~k~~~nyV~~a~~~ll~~g~~eV~ikA~G~AIskAV~vaEilk~r~~~gl~~q~i~i~s~~i 74 (102)
T 2h9u_A 6 APEVRIGRKPVMNYVLAILTTLMEQGTNQVVVKARGRNINRAVDAVEIVRKRFAKNIEIKDIKIDSQEI 74 (102)
T ss_dssp CCEEECCSSCHHHHHHHHHHHHTSTTCCEEEEEEETTHHHHHHHHHHHHHHHTTTTEEEEEEEEEEEEE
T ss_pred CCEEEEcCCCHHHHHHHHHHHHHhCCCCEEEEEEechhhhHHHHHHHHHHHhccCCceEEEEEEeeEEE
Confidence 3789999999977777777567765 678888888887778889999999999 675545 3444443
No 8
>3lyv_A Ribosome-associated factor Y; ribosomal protein S30AE family, structural genomics, PSI-2, structure initiative; 2.70A {Streptococcus pyogenes}
Probab=28.76 E-value=60 Score=24.80 Aligned_cols=47 Identities=28% Similarity=0.420 Sum_probs=35.0
Q ss_pred CeeEEEeCCCChHhHHHHHHHHHHhcCCEEEEEE---CCEEEEEcCCCCC
Q 017893 213 EAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIFRH---GGTLVLYRGRNYN 259 (364)
Q Consensus 213 ELVKVK~l~~~~~dmkeiae~LeekTGg~VVq~I---G~tiVLYRgknY~ 259 (364)
++|+.|-......+.++++.+++-.-.--+|-+. |.+-|+||.++.+
T Consensus 2 ~iVr~K~~~~kpMsveEAv~qMel~gh~F~vF~n~etg~~nVVYRR~dG~ 51 (66)
T 3lyv_A 2 QVVRTKNVTLKPMDVEEARLQMELLGHDFFIYTDSEDGATNILYRREDGN 51 (66)
T ss_dssp CCCCCCCCCCCEECHHHHHHHHHTTTCSEEEEEETTTCSEEEEEECTTSS
T ss_pred eEEEEEEccCCCCCHHHHHHHHHcCCCcEEEEEeCCCCCEEEEEEECCCC
Confidence 4566666666778899999999876555666654 7799999987654
No 9
>3k2t_A LMO2511 protein; listeria monocytogenes,binding, structural genomics, PSI-2, protein structure initiative; 2.40A {Listeria monocytogenes}
Probab=28.74 E-value=56 Score=24.17 Aligned_cols=46 Identities=17% Similarity=0.320 Sum_probs=31.6
Q ss_pred eeEEEeCCCChHhHHHHHHHHHHhcCCEEEEEE---CCEEEEEcCCCCC
Q 017893 214 AVRIKCLGVPTVDMKNVCFQLEDKTFGKIIFRH---GGTLVLYRGRNYN 259 (364)
Q Consensus 214 LVKVK~l~~~~~dmkeiae~LeekTGg~VVq~I---G~tiVLYRgknY~ 259 (364)
+|+.|-......+.++++.+++-.-.--+|-+. |.+-|+||.++.+
T Consensus 2 ivr~K~~~~kpmsveEAv~qmel~gh~F~vF~n~~t~~~nVvYrR~dG~ 50 (57)
T 3k2t_A 2 IVRTKQFSLKPMDSEEAVLQMNLLGHSFYVYTDAETNGTNIVYSRKDGK 50 (57)
T ss_dssp CCCCCC---CCBCHHHHHHHHHHHTCSEEEEEBSSSCCEEEEEECTTSC
T ss_pred eEEEEeccCCCCCHHHHHHHHHhCCCcEEEEEcCCCCCEEEEEEeCCCC
Confidence 455555556667889999999886666666653 7899999987644
No 10
>3dg3_A Muconate cycloisomerase; muconate lactonizing enzyme, muconolactone binding; 1.60A {Mycobacterium smegmatis} PDB: 3dg6_A* 3dg7_A*
Probab=25.16 E-value=72 Score=30.30 Aligned_cols=61 Identities=13% Similarity=0.197 Sum_probs=45.2
Q ss_pred HHHHHhC-CCCCCceEEeccCCC--CCchhHHHHHHhhhcceEEEecc-CCCcchhHHHHHhhhcc
Q 017893 294 TKEMRKR-GLAVPVLTKLAKNGY--YGSLVPMVRDAFLVSELVRIDCQ-GLERSDYKKIGCKLRSW 355 (364)
Q Consensus 294 ~telRr~-g~~lp~~~kLgRNg~--~~~Lv~~V~~~we~s~ivKI~ck-G~~~sd~~kig~kLk~L 355 (364)
+.+.... |-+..+ +|+|.+.. -...+++||+++-...-..||++ |....+..+++..|.++
T Consensus 147 a~~~~~~~G~~~~K-~K~g~~~~~~d~~~v~avR~a~g~~~~l~vDan~~~~~~~a~~~~~~l~~~ 211 (367)
T 3dg3_A 147 AERIRETYGINTFK-VKVGRRPVQLDTAVVRALRERFGDAIELYVDGNRGWSAAESLRAMREMADL 211 (367)
T ss_dssp HHHHHHHHCCCEEE-EECCCSSTHHHHHHHHHHHHHHGGGSEEEEECTTCSCHHHHHHHHHHTTTS
T ss_pred HHHHHHhcCccEEE-EeeCCChhhhHHHHHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 4445555 877666 67776543 23468899999976666799997 88888889999999875
No 11
>3i6e_A Muconate cycloisomerase I; structural genomics, NYSGXRC, targer 9468A, muconate lactonizing enzyme, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi} PDB: 3i6t_A
Probab=24.61 E-value=68 Score=30.79 Aligned_cols=61 Identities=16% Similarity=0.188 Sum_probs=44.5
Q ss_pred HHHHHHhCCCCCCceEEeccCC--CCCchhHHHHHHhhhcceEEEecc-CCCcchhHHHHHhhhcc
Q 017893 293 ETKEMRKRGLAVPVLTKLAKNG--YYGSLVPMVRDAFLVSELVRIDCQ-GLERSDYKKIGCKLRSW 355 (364)
Q Consensus 293 E~telRr~g~~lp~~~kLgRNg--~~~~Lv~~V~~~we~s~ivKI~ck-G~~~sd~~kig~kLk~L 355 (364)
++......|-+..+ +|+|... .-...+++||+++ ...-..||++ |....+..+++..|.++
T Consensus 155 ~a~~~~~~G~~~~K-~Kvg~~~~~~d~~~v~avR~a~-~~~~l~vDan~~~~~~~A~~~~~~L~~~ 218 (385)
T 3i6e_A 155 LMERLRADGVGLIK-LKTGFRDHAFDIMRLELIARDF-PEFRVRVDYNQGLEIDEAVPRVLDVAQF 218 (385)
T ss_dssp HHHHHHHHTCCEEE-EECSSSCHHHHHHHHHHHHHHC-TTSEEEEECTTCCCGGGHHHHHHHHHTT
T ss_pred HHHHHHHcCCCEEE-EecCCCCHHHHHHHHHHHHHhC-CCCeEEEECCCCCCHHHHHHHHHHHHhc
Confidence 34445556766655 6677642 2245688999999 7767789997 88888888999999875
No 12
>3sbf_A Mandelate racemase / muconate lactonizing enzyme; enolase fold, acid sugar dehydratase, D-araninonate, isomera; HET: EPE D8T; 1.50A {Vibrionales bacterium swat-3} PDB: 3r25_A 3dfh_A 4gis_A 4gir_A 4ggh_A 3gy1_A
Probab=22.98 E-value=1.2e+02 Score=29.22 Aligned_cols=61 Identities=10% Similarity=0.076 Sum_probs=46.0
Q ss_pred HHHHHhCCCCCCceEEeccCCCC-------------------------CchhHHHHHHhhhcceEEEecc-CCCcchhHH
Q 017893 294 TKEMRKRGLAVPVLTKLAKNGYY-------------------------GSLVPMVRDAFLVSELVRIDCQ-GLERSDYKK 347 (364)
Q Consensus 294 ~telRr~g~~lp~~~kLgRNg~~-------------------------~~Lv~~V~~~we~s~ivKI~ck-G~~~sd~~k 347 (364)
+......|-+..+ +|+|..+.- ...+++||+++-...-..||++ |....+..+
T Consensus 141 a~~~~~~G~~~~K-~KvG~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~~v~avR~a~G~d~~l~vDan~~~~~~~A~~ 219 (401)
T 3sbf_A 141 VEGFLEKGYKHIR-CQLGFYGGVPTDLHTTQNPTEGSYYDQDQYMDNTLTMFKSLREKYGNQFHILHDVHERLFPNQAIQ 219 (401)
T ss_dssp HHHHHHTTCCEEE-EEESCCCSCGGGSCCCSSCCSSEECCHHHHHHHHHHHHHHHHHHHTTSSEEEEECTTCSCHHHHHH
T ss_pred HHHHHHcCCCEEE-EeeccCCcccccccccccccccccccchHHHHHHHHHHHHHHHHcCCCCEEEEECCCCCCHHHHHH
Confidence 4555567877766 677765421 2347899999977777889997 888899999
Q ss_pred HHHhhhcc
Q 017893 348 IGCKLRSW 355 (364)
Q Consensus 348 ig~kLk~L 355 (364)
++..|.++
T Consensus 220 ~~~~L~~~ 227 (401)
T 3sbf_A 220 FAKEVEQY 227 (401)
T ss_dssp HHHHHGGG
T ss_pred HHHHHHhc
Confidence 99999876
No 13
>3jva_A Dipeptide epimerase; enolase superfamily, isomerase; 1.70A {Enterococcus faecalis V583} PDB: 3jw7_A* 3jzu_A* 3k1g_A* 3kum_A*
Probab=22.02 E-value=66 Score=30.41 Aligned_cols=62 Identities=19% Similarity=0.112 Sum_probs=45.3
Q ss_pred HHHHHHhCCCCCCceEEeccCC-CCCchhHHHHHHhhhcceEEEecc-CCCcchhHHHHHhhhcc
Q 017893 293 ETKEMRKRGLAVPVLTKLAKNG-YYGSLVPMVRDAFLVSELVRIDCQ-GLERSDYKKIGCKLRSW 355 (364)
Q Consensus 293 E~telRr~g~~lp~~~kLgRNg-~~~~Lv~~V~~~we~s~ivKI~ck-G~~~sd~~kig~kLk~L 355 (364)
++.++...|-+... +|+|.+. .-...+++||+++-...-..||++ |....+..+++..|.++
T Consensus 146 ~a~~~~~~G~~~~K-~K~g~~~~~d~~~v~avR~a~g~~~~l~vDan~~~~~~~a~~~~~~L~~~ 209 (354)
T 3jva_A 146 KAVEKVKLGFDTLK-IKVGTGIEADIARVKAIREAVGFDIKLRLDANQAWTPKDAVKAIQALADY 209 (354)
T ss_dssp HHHHHHHTTCSEEE-EECCSCHHHHHHHHHHHHHHHCTTSEEEEECTTCSCHHHHHHHHHHTTTS
T ss_pred HHHHHHHhCCCeEE-EEeCCCHHHHHHHHHHHHHHcCCCCeEEEECCCCCCHHHHHHHHHHHHhc
Confidence 34556667776666 6677542 224468899999977777889997 88888888899999874
No 14
>3my9_A Muconate cycloisomerase; structural genomics, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics, nysgx; 2.20A {Azorhizobium caulinodans}
Probab=21.57 E-value=92 Score=29.67 Aligned_cols=61 Identities=18% Similarity=0.099 Sum_probs=43.5
Q ss_pred HHHHHhCCCCCCceEEeccCC--CCCchhHHHHHHhhhcceEEEecc-CCCcchhHHHHHhhhcc
Q 017893 294 TKEMRKRGLAVPVLTKLAKNG--YYGSLVPMVRDAFLVSELVRIDCQ-GLERSDYKKIGCKLRSW 355 (364)
Q Consensus 294 ~telRr~g~~lp~~~kLgRNg--~~~~Lv~~V~~~we~s~ivKI~ck-G~~~sd~~kig~kLk~L 355 (364)
+......|-+..+ +|+|... .-...+++||+++-...-..||++ |....+..+++..|.++
T Consensus 154 a~~~~~~G~~~~K-~Kvg~~~~~~d~~~v~avR~~~g~~~~l~vDan~~~~~~~A~~~~~~l~~~ 217 (377)
T 3my9_A 154 MRAMVPAGHTVFK-MKTGVKPHAEELRILETMRGEFGERIDLRLDFNQALTPFGAMKILRDVDAF 217 (377)
T ss_dssp HHHHTTTTCCEEE-EECSSSCHHHHHHHHHHHHHHHGGGSEEEEECTTCCCTTTHHHHHHHHHTT
T ss_pred HHHHHHcCCCEEE-EccCCCcHHHHHHHHHHHHHHhCCCCeEEEeCCCCcCHHHHHHHHHHHhhc
Confidence 3444445655554 5666542 224568899999977767789997 88888999999999875
No 15
>1nfj_A ALBA, conserved hypothetical protein AF1956; SIR2, HDAC, gene regulation, transcription; 2.00A {Archaeoglobus fulgidus} SCOP: d.68.6.1 PDB: 1nfh_A 2z7c_A*
Probab=21.48 E-value=2.4e+02 Score=22.24 Aligned_cols=57 Identities=16% Similarity=0.216 Sum_probs=43.6
Q ss_pred CceEEeCCCCCCHHHHHHHHHHHHh-CCeeEEEeCCCChHhHHHHHHHHHHhc-CCEEEE
Q 017893 187 KRQINLGRDGLTHNMLNDIHNHWKH-AEAVRIKCLGVPTVDMKNVCFQLEDKT-FGKIIF 244 (364)
Q Consensus 187 kPvV~IGK~GLTd~VVeeI~~aLk~-hELVKVK~l~~~~~dmkeiae~LeekT-Gg~VVq 244 (364)
...|.||+.|+..-|...+. .|+. +.=|.|+-.|..-...-.+++.|.++. .|.-|+
T Consensus 3 ~n~I~V~~k~v~~yV~~~~~-~l~~g~~eV~ika~G~AIskAV~vaeilk~r~~~gl~i~ 61 (89)
T 1nfj_A 3 EHVVYVGNKPVMNYVLATLT-QLNEGADEVVIKARGRAISRAVDVAEIVRNRFMPGVKVK 61 (89)
T ss_dssp CEEEECCSSCHHHHHHHHHH-HHHTTCSEEEEEEETTHHHHHHHHHHHHHHHTCTTCEEE
T ss_pred CCEEEEcCCCHHHHHHHHHH-HHhCCCCEEEEEEecHHHHHHHHHHHHHHHhccCCcEEE
Confidence 35789999998766666655 5665 778899999987778889999999998 554434
No 16
>3tji_A Mandelate racemase/muconate lactonizing enzyme, N domain protein; enolase, dehydratase, enzyme function initiative, EFI, lyase; 1.80A {Enterobacter SP}
Probab=21.29 E-value=1.2e+02 Score=29.64 Aligned_cols=61 Identities=11% Similarity=0.085 Sum_probs=46.1
Q ss_pred HHHHHhCCCCCCceEEeccCCCC-------------------------CchhHHHHHHhhhcceEEEecc-CCCcchhHH
Q 017893 294 TKEMRKRGLAVPVLTKLAKNGYY-------------------------GSLVPMVRDAFLVSELVRIDCQ-GLERSDYKK 347 (364)
Q Consensus 294 ~telRr~g~~lp~~~kLgRNg~~-------------------------~~Lv~~V~~~we~s~ivKI~ck-G~~~sd~~k 347 (364)
+.+....|-+..+ +|+|..+.- ...+++||+++-...-..||++ |....+..+
T Consensus 162 a~~~~~~G~~~iK-lKvG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~e~v~avR~avG~d~~L~vDaN~~~~~~~A~~ 240 (422)
T 3tji_A 162 VDALIAQGYRHIR-CQLGFYGGTPSALHAPDNPTPGAWFDQQEYMSNTVEMFHALREKYGWKLHILHDVHERLFPQQAVQ 240 (422)
T ss_dssp HHHHHHTTCSEEE-EEESCCCBCGGGSCCCSSCCSSEECCHHHHHHHHHHHHHHHHHHHCSSSEEEEECTTCSCHHHHHH
T ss_pred HHHHHHcCCCEEE-EeeccCCcccccccccccccccccccchhHHHHHHHHHHHHHHHcCCCCEEEEECCCCCCHHHHHH
Confidence 4556667877766 677765421 2347899999977777889997 888899999
Q ss_pred HHHhhhcc
Q 017893 348 IGCKLRSW 355 (364)
Q Consensus 348 ig~kLk~L 355 (364)
++..|.++
T Consensus 241 ~~~~Le~~ 248 (422)
T 3tji_A 241 LAKQLEPF 248 (422)
T ss_dssp HHHHHGGG
T ss_pred HHHHHHhh
Confidence 99999876
Done!