BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017894
(364 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2RMP|A Chain A, Rmp-Pepstatin A Complex
pdb|2ASI|A Chain A, Aspartic Proteinase
Length = 361
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 88/361 (24%), Positives = 143/361 (39%), Gaps = 51/361 (14%)
Query: 22 YIVTVGIGTPKRKFSLIFDTGSDLTW------TQCKPCVGFCYQQKEKIFDPKRSKSYRN 75
Y + V IGTP + F L+FDTGS TW T+ + CVG + FDP S +++
Sbjct: 20 YAIPVSIGTPGQDFLLLFDTGSSDTWVPHKGCTKSEGCVG------SRFFDPSASSTFK- 72
Query: 76 XXXXXXXXXXLESATGNIPGCASNKTCVYG--------IQYGDSSFSVGFFAKETLTLTS 127
+ TG G + G + Y D+ G A+++ +
Sbjct: 73 ---ATNYNLNITYGTGGANGLYFEDSIAIGDITVTKQILAYVDNV--RGPTAEQS---PN 124
Query: 128 KDVFPKFLLGCG--QNNXXXXXXXXXXXXXXXNKISLVYQTASKYKKRFSYCLPSSSSST 185
D+F L G N N +Y+ FS + +++S T
Sbjct: 125 ADIFLDGLFGAAYPDNTAMEAEYGSTYNTVHVN----LYKQGLISSPLFSVYM-NTNSGT 179
Query: 186 GHLTFGPGIKKS-----VKFTPLSSAFQGSSFYGLDMTGISVGGEKLPIATTVFSTPGTI 240
G + FG G+ + + +T + S + G F+ +TGI+V G A FS P
Sbjct: 180 GEVVFG-GVNNTLLGGDIAYTDVMSRYGGYYFWDAPVTGITVDGS----AAVRFSRPQAF 234
Query: 241 -IDSGTVITRLPPHAYT-VLKTAFRQLMSKYPTAPAVSILDTCYDFSEHETITIPKISFF 298
ID+GT +P A + ++K A L T + Y S+ + + S
Sbjct: 235 TIDTGTNFFIMPSSAASKIVKAA---LPDATETQQGWVVPCASYQNSKSTISIVMQKSGS 291
Query: 299 FNGGVEVDVDVTGIMFPIRASQVCLAFAGNSDPSDVGIFGNVQQHTLEVVYDVAHGQVGF 358
+ +E+ V V+ ++ P+ S F D + I GN+ VYD + ++GF
Sbjct: 292 SSDTIEISVPVSKMLLPVDQSNETCMFIILPDGGNQYIVGNLFLRFFVNVYDFGNNRIGF 351
Query: 359 A 359
A
Sbjct: 352 A 352
>pdb|2EWY|A Chain A, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
pdb|2EWY|B Chain B, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
pdb|2EWY|C Chain C, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
pdb|2EWY|D Chain D, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
Length = 383
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 79/363 (21%), Positives = 136/363 (37%), Gaps = 40/363 (11%)
Query: 22 YIVTVGIGTPKRKFSLIFDTGSDLTWTQCKPCVGFCYQQKEKIFDPKRSKSYRNXXXXXX 81
Y + + IGTP +K ++ DTGS G + + FD +RS +YR+
Sbjct: 15 YYLEMLIGTPPQKLQILVDTGS-----SNFAVAGTPHSYIDTYFDTERSSTYRSKGFDVT 69
Query: 82 XXXXLESATGNIPGCASNKTCVYGIQYGDSSFSVGFFAKETLTLTSKDVFPKFLLGCGQN 141
S TG + + + F+ F S++ F + G
Sbjct: 70 VKYTQGSWTGFV---GEDLVTI------PKGFNTSFLVNIATIFESENFFLPGIKWNGIL 120
Query: 142 NXXXXXXXXXXXXXXXNKISLVYQTASKYKKRFSYC---LPSSSSST--GHLTFGPGIKK 196
SLV Q C LP + S T G L G GI+
Sbjct: 121 GLAYATLAKPSSSLETFFDSLVTQANIPNVFSMQMCGAGLPVAGSGTNGGSLVLG-GIEP 179
Query: 197 S-----VKFTPLSSAFQGSSFYGLDMTGISVGGEKLPIATTVFSTPGTIIDSGTVITRLP 251
S + +TP+ + +Y +++ + +GG+ L + ++ I+DSGT + RLP
Sbjct: 180 SLYKGDIWYTPIKEEW----YYQIEILKLEIGGQSLNLDCREYNADKAIVDSGTTLLRLP 235
Query: 252 PHAYTVLKTAFRQ--LMSKYPTAPAVSILDTCYDFSEHETITIPKISFFF---NGGVEVD 306
+ + A + L+ ++ C+ SE PKIS + N
Sbjct: 236 QKVFDAVVEAVARASLIPEFSDGFWTGSQLACWTNSETPWSYFPKISIYLRDENSSRSFR 295
Query: 307 VDVTGIMF--PIRASQV---CLAFAGNSDPSDVGIFGNVQQHTLEVVYDVAHGQVGFAAG 361
+ + ++ P+ + + C F G S ++ + G V++D A +VGFAA
Sbjct: 296 ITILPQLYIQPMMGAGLNYECYRF-GISPSTNALVIGATVMEGFYVIFDRAQKRVGFAAS 354
Query: 362 GCS 364
C+
Sbjct: 355 PCA 357
>pdb|1T6E|X Chain X, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor I
pdb|1T6G|A Chain A, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor-i In Complex With Aspergillus Niger Xylanase-i
pdb|1T6G|B Chain B, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor-i In Complex With Aspergillus Niger Xylanase-i
Length = 381
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 55/227 (24%), Positives = 91/227 (40%), Gaps = 31/227 (13%)
Query: 160 ISLVYQTAS--KYKKRFSYCLPSSSSSTGHLTFG------PGIKKSVKFTPLSSAFQGSS 211
++L Q AS K RF CLP+ G FG P +S+ +TPL + GS
Sbjct: 148 LALPAQVASAQKVANRFLLCLPTGGP--GVAIFGGGPVPWPQFTQSMPYTPLVTK-GGSP 204
Query: 212 FYGLDMTGISVGGEKLPIATTVFSTPGTIIDSGTVITRLPPHAYTVLKTAFRQLMSKY-- 269
+ + I VG ++P+ +T G ++ + L P Y L AF + ++
Sbjct: 205 AHYISARSIVVGDTRVPVPEGALATGGVMLSTRLPYVLLRPDVYRPLMDAFTKALAAQHA 264
Query: 270 ---PTAPAVSIL---DTCYDF----SEHETITIPKISFFFNGGVEVDVDVTGIMFPIRAS 319
P A AV + CYD + +P + +GG + + M ++
Sbjct: 265 NGAPVARAVEAVAPFGVCYDTKTLGNNLGGYAVPNVQLGLDGGSDWTMTGKNSMVDVKQG 324
Query: 320 QVCLAF-------AGNSDPSDVGIFGNVQQHTLEVVYDVAHGQVGFA 359
C+AF AG+ V I G Q + +D+ ++GF+
Sbjct: 325 TACVAFVEMKGVAAGDGRAPAV-ILGGAQMEDFVLDFDMEKKRLGFS 370
>pdb|1G0V|A Chain A, The Structure Of Proteinase A Complexed With A Ia3 Mutant,
Mvv
Length = 329
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 81/360 (22%), Positives = 141/360 (39%), Gaps = 64/360 (17%)
Query: 19 SGNYIVTVGIGTPKRKFSLIFDTGSDLTWTQCKPCVGF-CYQQKEKIFDPKRSKSYRNXX 77
+ Y + +GTP + F +I DTGS W C C+ + +D + S SY+
Sbjct: 12 NAQYYTDITLGTPPQNFKVILDTGSSNLWVPSNECGSLACFLHSK--YDHEASSSYK--- 66
Query: 78 XXXXXXXXLESATGNIPGCASNKTCVYGIQYGDSSFSVGFFAKETLTLTSKDVFPKF--L 135
++ TG++ G S T + GD + FA+ T F KF +
Sbjct: 67 -ANGTEFAIQYGTGSLEGYISQDT----LSIGDLTIPKQDFAEATSEPGLTFAFGKFDGI 121
Query: 136 LGCGQNNXXXXXXXXXXXXXXXNKISLVYQTASKY----KKRFSYCLPSSSSST---GHL 188
LG G + +K+ + A + +KRF++ L +S T G
Sbjct: 122 LGLGYD------------TISVDKVVPPFYNAIQQDLLDEKRFAFYLGDTSKDTENGGEA 169
Query: 189 TFGPGIKKS-----VKFTPLSSAFQGSSFYGLDMTGISVGGEKLPIATTVFSTPGTIIDS 243
TFG GI +S + + P+ + +++ + GI +G E + + G ID+
Sbjct: 170 TFG-GIDESKFKGDITWLPV----RRKAYWEVKFEGIGLGDEYAEL-----ESHGAAIDT 219
Query: 244 GTVITRLPPHAYTVLKTAFRQLMSKYPTAPAVSILDTCYDFSEHETITIPKISFFFNGGV 303
GT + LP + ++++ A S D + + +P + F FNG
Sbjct: 220 GTSLITLP--------SGLAEMINAEIGAKKGSTGQYTLDCNTRD--NLPDLIFNFNG-- 267
Query: 304 EVDVDVTGIMFPIRASQVCLAFAGNSD-PSDVG---IFGNVQQHTLEVVYDVAHGQVGFA 359
+ + + + S C++ D P VG I G+ +YD+ + VG A
Sbjct: 268 -YNFTIGPYDYTLEVSGSCISAITPMDFPEPVGPLAIVGDAFLRKYYSIYDLGNNAVGLA 326
>pdb|3VLA|A Chain A, Crystal Structure Of Edgp
Length = 413
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 84/386 (21%), Positives = 145/386 (37%), Gaps = 59/386 (15%)
Query: 22 YIVTVGIGTPKRKFSLIFDTGSDLTWTQCKPCVGFCYQQKEKIFDPKRSKSYRNXXXXXX 81
Y+ T+ TP +L+ D G W C + P R ++ +
Sbjct: 22 YVTTINQRTPLVSENLVVDLGGRFLWVDCD------QNYVSSTYRPVRCRTSQCSLSGSI 75
Query: 82 XXXXLESATGNIPGCASNKTCVYGIQYGDSSFSVGFFAKETLTLTSKD--------VFPK 133
+ G PGC +N V+ ++ + G A++ +++ S D P+
Sbjct: 76 ACG--DCFNGPRPGCNNNTCGVFPENPVINTATGGEVAEDVVSVESTDGSSSGRVVTVPR 133
Query: 134 FLLGCGQNNXXXXXXXXXXXXXX--XNKISLVYQTAS--KYKKRFSYCLPSSSSSTGHLT 189
F+ C + +I+L Q AS +K++F+ CL S+SS +
Sbjct: 134 FIFSCAPTSLLQNLASGVVGMAGLGRTRIALPSQFASAFSFKRKFAMCLSGSTSSNSVII 193
Query: 190 FG-------PGI---KKSVKFTPL--------SSAFQG--SSFYGLDMTGISVGGEKLPI 229
FG P I K++ +TPL +++ QG S Y + + I + + + +
Sbjct: 194 FGNDPYTFLPNIIVSDKTLTYTPLLTNPVSTSATSTQGEPSVEYFIGVKSIKINSKIVAL 253
Query: 230 ATTVFSTPGTIIDSGTVITRLPPHAYTVLKT--------------AFRQLMSKYPTAPAV 275
T++ S + GT I+ + P YTVL+T A R + AP
Sbjct: 254 NTSLLSISSAGL-GGTKISTINP--YTVLETSIYKAVTEAFIKESAARNITRVASVAPFG 310
Query: 276 SILDTCYDFSEHETITIPKISFFFNG-GVEVDVDVTGIMFPIRASQVCLAFA-GNSDPSD 333
+ T S ++P I V + + M I + VCL G S+
Sbjct: 311 ACFSTDNILSTRLGPSVPSIDLVLQSESVVWTITGSNSMVYINDNVVCLGVVDGGSNLRT 370
Query: 334 VGIFGNVQQHTLEVVYDVAHGQVGFA 359
+ G Q V +D+A +VGF+
Sbjct: 371 SIVIGGHQLEDNLVQFDLATSRVGFS 396
>pdb|3VLB|A Chain A, Crystal Structure Of Xeg-Edgp
pdb|3VLB|C Chain C, Crystal Structure Of Xeg-Edgp
Length = 413
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 84/386 (21%), Positives = 145/386 (37%), Gaps = 59/386 (15%)
Query: 22 YIVTVGIGTPKRKFSLIFDTGSDLTWTQCKPCVGFCYQQKEKIFDPKRSKSYRNXXXXXX 81
Y+ T+ TP +L+ D G W C + P R ++ +
Sbjct: 22 YVTTINQRTPLVSENLVVDLGGRFLWVDCD------QNYVSSTYRPVRCRTSQCSLSGSI 75
Query: 82 XXXXLESATGNIPGCASNKTCVYGIQYGDSSFSVGFFAKETLTLTSKD--------VFPK 133
+ G PGC +N V+ ++ + G A++ +++ S D P+
Sbjct: 76 ACG--DCFNGPRPGCNNNTCGVFPENPVINTATGGEVAEDVVSVESTDGSSSGRVVTVPR 133
Query: 134 FLLGCGQNNXXXXXXXXXXXXXX--XNKISLVYQTAS--KYKKRFSYCLPSSSSSTGHLT 189
F+ C + +I+L Q AS +K++F+ CL S+SS +
Sbjct: 134 FIFSCAPTSLLQNLASGVVGMAGLGRTRIALPSQFASAFSFKRKFAMCLSGSTSSNSVII 193
Query: 190 FG-------PGI---KKSVKFTPL--------SSAFQG--SSFYGLDMTGISVGGEKLPI 229
FG P I K++ +TPL +++ QG S Y + + I + + + +
Sbjct: 194 FGNDPYTFLPNIIVSDKTLTYTPLLTNPVSTSATSTQGEPSVEYFIGVKSIKINSKIVAL 253
Query: 230 ATTVFSTPGTIIDSGTVITRLPPHAYTVLKT--------------AFRQLMSKYPTAPAV 275
T++ S + GT I+ + P YTVL+T A R + AP
Sbjct: 254 NTSLLSISSAGL-GGTKISTINP--YTVLETSIYKAVTEAFIKESAARNITRVASVAPFG 310
Query: 276 SILDTCYDFSEHETITIPKISFFFNG-GVEVDVDVTGIMFPIRASQVCLAFA-GNSDPSD 333
+ T S ++P I V + + M I + VCL G S+
Sbjct: 311 ACFSTDNILSTRLGPSVPSIDLVLQSESVVWTITGSNSMVYINDNVVCLGVVDGGSNLRT 370
Query: 334 VGIFGNVQQHTLEVVYDVAHGQVGFA 359
+ G Q V +D+A +VGF+
Sbjct: 371 SIVIGGHQLEDNLVQFDLATSRVGFS 396
>pdb|1UH7|A Chain A, Crystal Structure Of Rhizopuspepsin At Ph 4.6
pdb|1UH8|A Chain A, Crystal Structure Of Rhizopuspepsin At Ph 8.0
pdb|1UH9|A Chain A, Crystal Structure Of Rhizopuspepsin At Ph 7.0
Length = 325
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 46/104 (44%), Gaps = 26/104 (25%)
Query: 22 YIVTVGIGTPKRKFSLIFDTGSDLTWTQCKPCVGFCYQQKEKIFDPKRSKSYRNXXXXXX 81
Y V IGTP +KF+L FDTGS W C C ++ K +DP +S +Y+
Sbjct: 17 YYGQVTIGTPGKKFNLDFDTGSSDLWIASTLCTN-CGSRQTK-YDPNQSSTYQ------- 67
Query: 82 XXXXLESATGNIPGCASNKTCVYGIQYGDSSFSVGFFAKETLTL 125
A +T + I YGD S + G AK+ + L
Sbjct: 68 ---------------ADGRT--WSISYGDGSSASGILAKDNVNL 94
>pdb|2JXR|A Chain A, Structure Of Yeast Proteinase A
pdb|1FQ4|A Chain A, Crystal Structure Of A Complex Between Hydroxyethylene
Inhibitor Cp- 108,420 And Yeast Aspartic Proteinase A
pdb|1FQ5|A Chain A, X-Ray Struture Of A Cyclic Statine Inhibitor Pd-129,541
Bound To Yeast Proteinase A
pdb|1FQ6|A Chain A, X-Ray Structure Of Glycol Inhibitor Pd-133,450 Bound To
Saccharopepsin
pdb|1FQ7|A Chain A, X-Ray Structure Of Inhibitor Cp-72,647 Bound To
Saccharopepsin
pdb|1FQ8|A Chain A, X-Ray Structure Of Difluorostatine Inhibitor Cp81,198
Bound To Saccharopepsin
Length = 329
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 80/360 (22%), Positives = 140/360 (38%), Gaps = 64/360 (17%)
Query: 19 SGNYIVTVGIGTPKRKFSLIFDTGSDLTWTQCKPCVGF-CYQQKEKIFDPKRSKSYRNXX 77
+ Y + +GTP + F +I DTGS W C C+ + +D + S SY+
Sbjct: 12 NAQYYTDITLGTPPQNFKVILDTGSSNLWVPSNECGSLACFLHSK--YDHEASSSYK--- 66
Query: 78 XXXXXXXXLESATGNIPGCASNKTCVYGIQYGDSSFSVGFFAKETLTLTSKDVFPKF--L 135
++ TG++ G S T + GD + FA+ T F KF +
Sbjct: 67 -ANGTEFAIQYGTGSLEGYISQDT----LSIGDLTIPKQDFAEATSEPGLTFAFGKFDGI 121
Query: 136 LGCGQNNXXXXXXXXXXXXXXXNKISLVYQTASKY----KKRFSYCLPSSSSST---GHL 188
LG G + +K+ + A + +KRF++ L +S T G
Sbjct: 122 LGLGYD------------TISVDKVVPPFYNAIQQDLLDEKRFAFYLGDTSKDTENGGEA 169
Query: 189 TFGPGIKKS-----VKFTPLSSAFQGSSFYGLDMTGISVGGEKLPIATTVFSTPGTIIDS 243
TFG GI +S + + P+ + +++ + GI +G E + + G ID+
Sbjct: 170 TFG-GIDESKFKGDITWLPV----RRKAYWEVKFEGIGLGDEYAEL-----ESHGAAIDT 219
Query: 244 GTVITRLPPHAYTVLKTAFRQLMSKYPTAPAVSILDTCYDFSEHETITIPKISFFFNGGV 303
GT + LP + ++++ A D + + +P + F FNG
Sbjct: 220 GTSLITLP--------SGLAEMINAEIGAKKGWTGQYTLDCNTRD--NLPDLIFNFNG-- 267
Query: 304 EVDVDVTGIMFPIRASQVCLAFAGNSD-PSDVG---IFGNVQQHTLEVVYDVAHGQVGFA 359
+ + + + S C++ D P VG I G+ +YD+ + VG A
Sbjct: 268 -YNFTIGPYDYTLEVSGSCISAITPMDFPEPVGPLAIVGDAFLRKYYSIYDIGNNAVGLA 326
>pdb|1DP5|A Chain A, The Structure Of Proteinase A Complexed With A Ia3 Mutant
Inhibitor
pdb|1DPJ|A Chain A, The Structure Of Proteinase A Complexed With Ia3 Peptide
Inhibitor
pdb|1FMU|A Chain A, Structure Of Native Proteinase A In P3221 Space Group.
pdb|1FMX|A Chain A, Structure Of Native Proteinase A In The Space Group P21
pdb|1FMX|B Chain B, Structure Of Native Proteinase A In The Space Group P21
Length = 329
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 80/360 (22%), Positives = 140/360 (38%), Gaps = 64/360 (17%)
Query: 19 SGNYIVTVGIGTPKRKFSLIFDTGSDLTWTQCKPCVGF-CYQQKEKIFDPKRSKSYRNXX 77
+ Y + +GTP + F +I DTGS W C C+ + +D + S SY+
Sbjct: 12 NAQYYTDITLGTPPQNFKVILDTGSSNLWVPSNECGSLACFLHSK--YDHEASSSYK--- 66
Query: 78 XXXXXXXXLESATGNIPGCASNKTCVYGIQYGDSSFSVGFFAKETLTLTSKDVFPKF--L 135
++ TG++ G S T + GD + FA+ T F KF +
Sbjct: 67 -ANGTEFAIQYGTGSLEGYISQDT----LSIGDLTIPKQDFAEATSEPGLTFAFGKFDGI 121
Query: 136 LGCGQNNXXXXXXXXXXXXXXXNKISLVYQTASKY----KKRFSYCLPSSSSST---GHL 188
LG G + +K+ + A + +KRF++ L +S T G
Sbjct: 122 LGLGYD------------TISVDKVVPPFYNAIQQDLLDEKRFAFYLGDTSKDTENGGEA 169
Query: 189 TFGPGIKKS-----VKFTPLSSAFQGSSFYGLDMTGISVGGEKLPIATTVFSTPGTIIDS 243
TFG GI +S + + P+ + +++ + GI +G E + + G ID+
Sbjct: 170 TFG-GIDESKFKGDITWLPV----RRKAYWEVKFEGIGLGDEYAEL-----ESHGAAIDT 219
Query: 244 GTVITRLPPHAYTVLKTAFRQLMSKYPTAPAVSILDTCYDFSEHETITIPKISFFFNGGV 303
GT + LP + ++++ A D + + +P + F FNG
Sbjct: 220 GTSLITLP--------SGLAEMINAEIGAKKGWTGQYTLDCNTRD--NLPDLIFNFNG-- 267
Query: 304 EVDVDVTGIMFPIRASQVCLAFAGNSD-PSDVG---IFGNVQQHTLEVVYDVAHGQVGFA 359
+ + + + S C++ D P VG I G+ +YD+ + VG A
Sbjct: 268 -YNFTIGPYDYTLEVSGSCISAITPMDFPEPVGPLAIVGDAFLRKYYSIYDLGNNAVGLA 326
>pdb|2B42|A Chain A, Crystal Structure Of The Triticum Xylanse Inhibitor-I In
Complex With Bacillus Subtilis Xylanase
Length = 381
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 56/235 (23%), Positives = 91/235 (38%), Gaps = 47/235 (20%)
Query: 160 ISLVYQTAS--KYKKRFSYCLPSSSSSTGHLTFG------PGIKKSVKFTPLSSAFQGSS 211
++L Q AS K RF CLP+ G FG P +S+ +TPL + GS
Sbjct: 148 LALPAQVASAQKVANRFLLCLPTGGP--GVAIFGGGPVPWPQFTQSMPYTPLVTK-GGSP 204
Query: 212 FYGLDMTGISVGGEKLPIATTVFSTPGTIIDSGTVITRLPPHAYTVLKT-AFRQLMSKYP 270
+ + I VG ++P+ +T G ++ TRLP Y +L+ +R LM +
Sbjct: 205 AHYISARSIVVGDTRVPVPEGALATGGVMLS-----TRLP---YVLLRPDVYRPLMDAFT 256
Query: 271 TAPAVS---------------ILDTCYDF----SEHETITIPKISFFFNGGVEVDVDVTG 311
A A CYD + +P + +GG + +
Sbjct: 257 KALAAQHANGAPVARAVVAVAPFGVCYDTKTLGNNLGGYAVPNVQLGLDGGSDWTMTGKN 316
Query: 312 IMFPIRASQVCLAF-------AGNSDPSDVGIFGNVQQHTLEVVYDVAHGQVGFA 359
M ++ C+AF AG+ V I G Q + +D+ ++GF+
Sbjct: 317 SMVDVKQGTACVAFVEMKGVAAGDGRAPAV-ILGGAQMEDFVLDFDMEKKRLGFS 370
>pdb|3APR|E Chain E, Binding Of A Reduced Peptide Inhibitor To The Aspartic
Proteinase From Rhizopus Chinensis. Implications For A
Mechanism Of Action
pdb|4APR|E Chain E, Structures Of Complexes Of Rhizopuspepsin With Pepstatin
And Other Statine-Containing Inhibitors
pdb|5APR|E Chain E, Structures Of Complexes Of Rhizopuspepsin With Pepstatin
And Other Statine-Containing Inhibitors
pdb|6APR|E Chain E, Structures Of Complexes Of Rhizopuspepsin With Pepstatin
And Other Statine-Containing Inhibitors
pdb|2APR|A Chain A, Structure And Refinement At 1.8 Angstroms Resolution Of
The Aspartic Proteinase From Rhizopus Chinensis
Length = 325
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 45/104 (43%), Gaps = 26/104 (25%)
Query: 22 YIVTVGIGTPKRKFSLIFDTGSDLTWTQCKPCVGFCYQQKEKIFDPKRSKSYRNXXXXXX 81
Y V IGTP +KF+L FDTGS W C C + K +DP +S +Y+
Sbjct: 17 YYGQVTIGTPGKKFNLDFDTGSSDLWIASTLCTN-CGSGQTK-YDPNQSSTYQ------- 67
Query: 82 XXXXLESATGNIPGCASNKTCVYGIQYGDSSFSVGFFAKETLTL 125
A +T + I YGD S + G AK+ + L
Sbjct: 68 ---------------ADGRT--WSISYGDGSSASGILAKDNVNL 94
>pdb|1B5F|A Chain A, Native Cardosin A From Cynara Cardunculus L.
pdb|1B5F|C Chain C, Native Cardosin A From Cynara Cardunculus L
Length = 239
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 31/54 (57%)
Query: 21 NYIVTVGIGTPKRKFSLIFDTGSDLTWTQCKPCVGFCYQQKEKIFDPKRSKSYR 74
+Y +GIGTP +KF++IFDTGS + W C+ + +++ S +Y+
Sbjct: 14 SYFGEIGIGTPPQKFTVIFDTGSSVLWVPSSKCINSKACRAHSMYESSDSSTYK 67
>pdb|1MPP|A Chain A, X-Ray Analyses Of Aspartic Proteinases. V. Structure And
Refinement At 2.0 Angstroms Resolution Of The Aspartic
Proteinase From Mucor Pusillus
Length = 361
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 29/53 (54%)
Query: 22 YIVTVGIGTPKRKFSLIFDTGSDLTWTQCKPCVGFCYQQKEKIFDPKRSKSYR 74
Y + V IGTP + F L+FDTGS TW K C ++ FDP S +++
Sbjct: 20 YAIPVSIGTPGQDFYLLFDTGSSDTWVPHKGCDNSEGCVGKRFFDPSSSSTFK 72
>pdb|1PSO|E Chain E, The Crystal Structure Of Human Pepsin And Its Complex
With Pepstatin
pdb|1QRP|E Chain E, Human Pepsin 3a In Complex With A Phosphonate Inhibitor
Iva-Val-Val- Leu(P)-(O)phe-Ala-Ala-Ome
pdb|1PSN|A Chain A, The Crystal Structure Of Human Pepsin And Its Complex
With Pepstatin
pdb|3UTL|A Chain A, Human Pepsin 3b
Length = 326
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 22 YIVTVGIGTPKRKFSLIFDTGSDLTWTQCKPCVGFCYQQKEKIFDPKRSKSYRN 75
Y T+GIGTP + F+++FDTGS W C + F+P+ S +Y++
Sbjct: 14 YFGTIGIGTPAQDFTVVFDTGSSNLWVPSVYCSSLACTNHNR-FNPEDSSTYQS 66
>pdb|1FLH|A Chain A, Crystal Structure Of Human Uropepsin At 2.45 A
Resolution
Length = 326
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 22 YIVTVGIGTPKRKFSLIFDTGSDLTWTQCKPCVGFCYQQKEKIFDPKRSKSYRN 75
Y T+GIGTP + F+++FDTGS W C + F+P+ S +Y++
Sbjct: 14 YFGTIGIGTPAQDFTVVFDTGSSNLWVPSVYCSSLACTNHNR-FNPEDSSTYQS 66
>pdb|1HTR|B Chain B, Crystal And Molecular Structures Of Human Progastricsin At
1.62 Angstroms Resolution
pdb|1AVF|A Chain A, Activation Intermediate 2 Of Human Gastricsin From Human
Stomach
pdb|1AVF|J Chain J, Activation Intermediate 2 Of Human Gastricsin From Human
Stomach
Length = 329
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 79/374 (21%), Positives = 130/374 (34%), Gaps = 97/374 (25%)
Query: 22 YIVTVGIGTPKRKFSLIFDTGSDLTWTQCKPCVGFCYQQ---KEKIFDPKRSKSYRNXXX 78
Y + IGTP + F ++FDTGS W P V +C Q F+P S +Y
Sbjct: 14 YFGEISIGTPPQNFLVLFDTGSSNLWV---PSV-YCQSQACTSHSRFNPSESSTY----- 64
Query: 79 XXXXXXXLESATGNIPGCASNKTCVYGIQYGDSSFSVGFFAKETLTLTSKDVFPKFLLGC 138
S + +QYG S + GFF +TLT+ S V P G
Sbjct: 65 -------------------STNGQTFSLQYGSGSLT-GFFGYDTLTVQSIQV-PNQEFGL 103
Query: 139 GQNN------------XXXXXXXXXXXXXXXNKISLVYQTASKYKKRFSYCLPSSSSSTG 186
+N + + Q + FS L + S+G
Sbjct: 104 SENEPGTNFVYAQFDGIMGLAYPALSVDEATTAMQGMVQEGALTSPVFSVYLSNQQGSSG 163
Query: 187 HLTFGPGIKKS-----VKFTPLSSAFQGSSFYGLDMTGISVGGEKLPIATTVFSTPG--T 239
G+ S + + P++ ++ + + +GG+ + + + G
Sbjct: 164 GAVVFGGVDSSLYTGQIYWAPVTQEL----YWQIGIEEFLIGGQA-----SGWCSEGCQA 214
Query: 240 IIDSGTVITRLPPHAYTVLKTAFRQLMSKYPTAPAVSILDTCYDFSEHETITIPKISFFF 299
I+D+GT + +P + L A +Y L C + +P ++F
Sbjct: 215 IVDTGTSLLTVPQQYMSALLQATGAQEDEYG-----QFLVNC-----NSIQNLPSLTFII 264
Query: 300 NGGVEVDVDVTGIMFPIRASQVCLAFAG--------------NSDPSDVGIFGNVQQHTL 345
N G+ FP+ S L+ G N P + I G+V +
Sbjct: 265 N----------GVEFPLPPSSYILSNNGYCTVGVEPTYLSSQNGQP--LWILGDVFLRSY 312
Query: 346 EVVYDVAHGQVGFA 359
VYD+ + +VGFA
Sbjct: 313 YSVYDLGNNRVGFA 326
>pdb|4AA9|A Chain A, Camel Chymosin At 1.6a Resolution
Length = 320
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 22 YIVTVGIGTPKRKFSLIFDTGSDLTWTQCKPCVGFCYQQKEKIFDPKRSKSYRN 75
Y + IGTP ++F+++FDTGS W C + + FDP++S ++RN
Sbjct: 13 YFGKIYIGTPPQEFTVVFDTGSSDLWVPSIYCKSNVCKNHHR-FDPRKSSTFRN 65
>pdb|4B1C|A Chain A, New Aminoimidazoles As Bace-1 Inhibitors: From Rational
Design To Ab-Lowering In Brain
Length = 375
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 70/178 (39%), Gaps = 16/178 (8%)
Query: 197 SVKFTPLSSAFQGSSFYGLDMTGISVGGEKLPIATTVFSTPGTIIDSGTVITRLPPHAYT 256
S+ +TP+ + +Y + + + + G+ L + ++ +I+DSGT RLP +
Sbjct: 179 SLWYTPIRREW----YYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFE 234
Query: 257 VLKTAFRQLMS--KYPTAPAVSILDTCYDFSEHETITIPKISFFFNGGV-----EVDVDV 309
+ + S K+P + C+ P IS + G V + +
Sbjct: 235 AAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILP 294
Query: 310 TGIMFPIR----ASQVCLAFAGNSDPSDVGIFGNVQQHTLEVVYDVAHGQVGFAAGGC 363
+ P+ + C FA S S + G V VV+D A ++GFA C
Sbjct: 295 QQYLRPVEDVATSQDDCYKFA-ISQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSAC 351
>pdb|2ZJK|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With 4-(4-Fluoro-Benzyl)-Piperazine-2-Carboxylic
Acid(3-Mercapto-Propyl)-Amide
pdb|2ZJK|B Chain B, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With 4-(4-Fluoro-Benzyl)-Piperazine-2-Carboxylic
Acid(3-Mercapto-Propyl)-Amide
pdb|2ZJK|C Chain C, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With 4-(4-Fluoro-Benzyl)-Piperazine-2-Carboxylic
Acid(3-Mercapto-Propyl)-Amide
Length = 405
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 70/178 (39%), Gaps = 16/178 (8%)
Query: 197 SVKFTPLSSAFQGSSFYGLDMTGISVGGEKLPIATTVFSTPGTIIDSGTVITRLPPHAYT 256
S+ +TP+ + +Y + + + + G+ L + ++ +I+DSGT RLP +
Sbjct: 207 SLWYTPIRREW----YYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFE 262
Query: 257 VLKTAFRQLMS--KYPTAPAVSILDTCYDFSEHETITIPKISFFFNGGV-----EVDVDV 309
+ + S K+P + C+ P IS + G V + +
Sbjct: 263 AAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILP 322
Query: 310 TGIMFPIR----ASQVCLAFAGNSDPSDVGIFGNVQQHTLEVVYDVAHGQVGFAAGGC 363
+ P+ + C FA S S + G V VV+D A ++GFA C
Sbjct: 323 QQYLRPVEDVATSQDDCYKFA-ISQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSAC 379
>pdb|1FKN|A Chain A, Structure Of Beta-Secretase Complexed With Inhibitor
pdb|1FKN|B Chain B, Structure Of Beta-Secretase Complexed With Inhibitor
pdb|1M4H|A Chain A, Crystal Structure Of Beta-Secretase Complexed With
Inhibitor Om00-3
pdb|1M4H|B Chain B, Crystal Structure Of Beta-Secretase Complexed With
Inhibitor Om00-3
Length = 391
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 70/178 (39%), Gaps = 16/178 (8%)
Query: 197 SVKFTPLSSAFQGSSFYGLDMTGISVGGEKLPIATTVFSTPGTIIDSGTVITRLPPHAYT 256
S+ +TP+ + +Y + + + + G+ L + ++ +I+DSGT RLP +
Sbjct: 193 SLWYTPIRREW----YYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFE 248
Query: 257 VLKTAFRQLMS--KYPTAPAVSILDTCYDFSEHETITIPKISFFFNGGV-----EVDVDV 309
+ + S K+P + C+ P IS + G V + +
Sbjct: 249 AAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILP 308
Query: 310 TGIMFPIR----ASQVCLAFAGNSDPSDVGIFGNVQQHTLEVVYDVAHGQVGFAAGGC 363
+ P+ + C FA S S + G V VV+D A ++GFA C
Sbjct: 309 QQYLRPVEDVATSQDDCYKFA-ISQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSAC 365
>pdb|2QK5|A Chain A, Structure Of Bace1 Bound To Sch626485
pdb|2QK5|B Chain B, Structure Of Bace1 Bound To Sch626485
pdb|2QMD|A Chain A, Structure Of Bace Bound To Sch722924
pdb|2QMD|B Chain B, Structure Of Bace Bound To Sch722924
pdb|2QMF|A Chain A, Structure Of Bace Bound To Sch735310
pdb|2QMF|B Chain B, Structure Of Bace Bound To Sch735310
pdb|2QP8|A Chain A, Structure Of Bace Bound To Sch734723
pdb|2QP8|B Chain B, Structure Of Bace Bound To Sch734723
pdb|2QMG|A Chain A, Structure Of Bace Bound To Sch745966
pdb|2QMG|B Chain B, Structure Of Bace Bound To Sch745966
Length = 395
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 70/178 (39%), Gaps = 16/178 (8%)
Query: 197 SVKFTPLSSAFQGSSFYGLDMTGISVGGEKLPIATTVFSTPGTIIDSGTVITRLPPHAYT 256
S+ +TP+ + +Y + + + + G+ L + ++ +I+DSGT RLP +
Sbjct: 196 SLWYTPIRREW----YYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFE 251
Query: 257 VLKTAFRQLMS--KYPTAPAVSILDTCYDFSEHETITIPKISFFFNGGV-----EVDVDV 309
+ + S K+P + C+ P IS + G V + +
Sbjct: 252 AAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILP 311
Query: 310 TGIMFPIR----ASQVCLAFAGNSDPSDVGIFGNVQQHTLEVVYDVAHGQVGFAAGGC 363
+ P+ + C FA S S + G V VV+D A ++GFA C
Sbjct: 312 QQYLRPVEDVATSQDDCYKFA-ISQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSAC 368
>pdb|3OAD|A Chain A, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3OAD|C Chain C, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3OAG|A Chain A, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3OAG|C Chain C, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3O9L|A Chain A, Design And Optimisation Of New Piperidines As Renin
Inhibitors
pdb|3O9L|C Chain C, Design And Optimisation Of New Piperidines As Renin
Inhibitors
Length = 166
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 38/88 (43%), Gaps = 9/88 (10%)
Query: 21 NYIVTVGIGTPKRKFSLIFDTGSDLTW---TQCKPCVGFCYQQKEKIFDPKRSKSYRNXX 77
Y +GIGTP + F ++FDTGS W ++C C K+FD S SY++
Sbjct: 19 QYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYH--KLFDASDSSSYKH-- 74
Query: 78 XXXXXXXXLESATGNIPGCASNKTCVYG 105
L +TG + G S G
Sbjct: 75 --NGTELTLRYSTGTVSGFLSQDIITVG 100
>pdb|3KMX|A Chain A, Structure Of Bace Bound To Sch346572
pdb|3KMX|B Chain B, Structure Of Bace Bound To Sch346572
pdb|3KMY|A Chain A, Structure Of Bace Bound To Sch12472
pdb|3KMY|B Chain B, Structure Of Bace Bound To Sch12472
pdb|3KN0|A Chain A, Structure Of Bace Bound To Sch708236
pdb|3KN0|B Chain B, Structure Of Bace Bound To Sch708236
pdb|3LNK|A Chain A, Structure Of Bace Bound To Sch743813
pdb|3LNK|B Chain B, Structure Of Bace Bound To Sch743813
pdb|4FRS|A Chain A, Structure Of Bace In Complex With
(S)-4-(3-Chloro-5-(5-(Prop-1-Yn-1-
Yl)pyridin-3-Yl)thiophen-2-Yl)-1,
4-Dimethyl-6-Oxotetrahydropyrimidin- 2(1h)-Iminium
pdb|4FRS|B Chain B, Structure Of Bace In Complex With
(S)-4-(3-Chloro-5-(5-(Prop-1-Yn-1-
Yl)pyridin-3-Yl)thiophen-2-Yl)-1,
4-Dimethyl-6-Oxotetrahydropyrimidin- 2(1h)-Iminium
Length = 395
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 70/178 (39%), Gaps = 16/178 (8%)
Query: 197 SVKFTPLSSAFQGSSFYGLDMTGISVGGEKLPIATTVFSTPGTIIDSGTVITRLPPHAYT 256
S+ +TP+ + +Y + + + + G+ L + ++ +I+DSGT RLP +
Sbjct: 196 SLWYTPIRREW----YYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFE 251
Query: 257 VLKTAFRQLMS--KYPTAPAVSILDTCYDFSEHETITIPKISFFFNGGV-----EVDVDV 309
+ + S K+P + C+ P IS + G V + +
Sbjct: 252 AAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILP 311
Query: 310 TGIMFPIR----ASQVCLAFAGNSDPSDVGIFGNVQQHTLEVVYDVAHGQVGFAAGGC 363
+ P+ + C FA S S + G V VV+D A ++GFA C
Sbjct: 312 QQYLRPVEDVATSQDDCYKFA-ISQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSAC 368
>pdb|3UDH|A Chain A, Crystal Structure Of Bace With Compound 1
pdb|3UDJ|A Chain A, Crystal Structure Of Bace With Compound 5
pdb|3UDK|A Chain A, Crystal Structure Of Bace With Compound 6
pdb|3UDM|A Chain A, Crystal Structure Of Bace With Compound 8
pdb|3UDN|A Chain A, Crystal Structure Of Bace With Compound 9
pdb|3UDP|A Chain A, Crystal Structure Of Bace With Compound 12
pdb|3UDQ|A Chain A, Crystal Structure Of Bace With Compound 13
pdb|3UDR|A Chain A, Crystal Structure Of Bace With Compound 14
pdb|3UDY|A Chain A, Crystal Structure Of Bace With Compound 11
pdb|4FM7|A Chain A, Crystal Structure Of Bace With Compound 14g
pdb|4FM8|A Chain A, Crystal Structure Of Bace With Compound 12a
Length = 404
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 70/178 (39%), Gaps = 16/178 (8%)
Query: 197 SVKFTPLSSAFQGSSFYGLDMTGISVGGEKLPIATTVFSTPGTIIDSGTVITRLPPHAYT 256
S+ +TP+ + +Y + + + + G+ L + ++ +I+DSGT RLP +
Sbjct: 191 SLWYTPIRREW----YYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFE 246
Query: 257 VLKTAFRQLMS--KYPTAPAVSILDTCYDFSEHETITIPKISFFFNGGV-----EVDVDV 309
+ + S K+P + C+ P IS + G V + +
Sbjct: 247 AAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILP 306
Query: 310 TGIMFPIR----ASQVCLAFAGNSDPSDVGIFGNVQQHTLEVVYDVAHGQVGFAAGGC 363
+ P+ + C FA S S + G V VV+D A ++GFA C
Sbjct: 307 QQYLRPVEDVATSQDDCYKFA-ISQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSAC 363
>pdb|2OF0|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 5
pdb|2OHK|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
1- Amino-Isoquinoline
pdb|2OHL|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
2- Aminoquinoline
pdb|2OHM|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
N~3~-Benzylpyridine-2,3-Diamine
pdb|2OHN|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
4- (4-Fluorobenzyl)piperidine
pdb|2OHQ|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 4
pdb|2OHR|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 6a
pdb|2OHS|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 6b
pdb|2OHT|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 7
pdb|2OHU|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 8b
pdb|2OHP|A Chain A, X-ray Crystal Structure Of Beta Secretase Complexed With
Compound 3
Length = 402
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 70/178 (39%), Gaps = 16/178 (8%)
Query: 197 SVKFTPLSSAFQGSSFYGLDMTGISVGGEKLPIATTVFSTPGTIIDSGTVITRLPPHAYT 256
S+ +TP+ + +Y + + + + G+ L + ++ +I+DSGT RLP +
Sbjct: 204 SLWYTPIRREW----YYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFE 259
Query: 257 VLKTAFRQLMS--KYPTAPAVSILDTCYDFSEHETITIPKISFFFNGGV-----EVDVDV 309
+ + S K+P + C+ P IS + G V + +
Sbjct: 260 AAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILP 319
Query: 310 TGIMFPIR----ASQVCLAFAGNSDPSDVGIFGNVQQHTLEVVYDVAHGQVGFAAGGC 363
+ P+ + C FA S S + G V VV+D A ++GFA C
Sbjct: 320 QQYLRPVEDVATSQDDCYKFA-ISQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSAC 376
>pdb|2Q15|A Chain A, Structure Of Bace Complexed To Compound 3a
Length = 385
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 70/178 (39%), Gaps = 16/178 (8%)
Query: 197 SVKFTPLSSAFQGSSFYGLDMTGISVGGEKLPIATTVFSTPGTIIDSGTVITRLPPHAYT 256
S+ +TP+ + +Y + + + + G+ L + ++ +I+DSGT RLP +
Sbjct: 187 SLWYTPIRREW----YYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFE 242
Query: 257 VLKTAFRQLMS--KYPTAPAVSILDTCYDFSEHETITIPKISFFFNGGV-----EVDVDV 309
+ + S K+P + C+ P IS + G V + +
Sbjct: 243 AAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTQQSFRITILP 302
Query: 310 TGIMFPIR----ASQVCLAFAGNSDPSDVGIFGNVQQHTLEVVYDVAHGQVGFAAGGC 363
+ P+ + C FA S S + G V VV+D A ++GFA C
Sbjct: 303 QQYLRPVEDVATSQDDCYKFA-ISQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSAC 359
>pdb|3R1G|B Chain B, Structure Basis Of Allosteric Inhibition Of Bace1 By An
Exosite- Binding Antibody
Length = 402
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 70/178 (39%), Gaps = 16/178 (8%)
Query: 197 SVKFTPLSSAFQGSSFYGLDMTGISVGGEKLPIATTVFSTPGTIIDSGTVITRLPPHAYT 256
S+ +TP+ + +Y + + + + G+ L + ++ +I+DSGT RLP +
Sbjct: 194 SLWYTPIRREW----YYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFE 249
Query: 257 VLKTAFRQLMS--KYPTAPAVSILDTCYDFSEHETITIPKISFFFNGGV-----EVDVDV 309
+ + S K+P + C+ P IS + G V + +
Sbjct: 250 AAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILP 309
Query: 310 TGIMFPIR----ASQVCLAFAGNSDPSDVGIFGNVQQHTLEVVYDVAHGQVGFAAGGC 363
+ P+ + C FA S S + G V VV+D A ++GFA C
Sbjct: 310 QQYLRPVEDVATSQDDCYKFA-ISQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSAC 366
>pdb|2Q11|A Chain A, Structure Of Bace Complexed To Compound 1
pdb|2Q11|B Chain B, Structure Of Bace Complexed To Compound 1
pdb|2Q11|C Chain C, Structure Of Bace Complexed To Compound 1
Length = 388
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 70/178 (39%), Gaps = 16/178 (8%)
Query: 197 SVKFTPLSSAFQGSSFYGLDMTGISVGGEKLPIATTVFSTPGTIIDSGTVITRLPPHAYT 256
S+ +TP+ + +Y + + + + G+ L + ++ +I+DSGT RLP +
Sbjct: 190 SLWYTPIRREW----YYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFE 245
Query: 257 VLKTAFRQLMS--KYPTAPAVSILDTCYDFSEHETITIPKISFFFNGGV-----EVDVDV 309
+ + S K+P + C+ P IS + G V + +
Sbjct: 246 AAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTQQSFRITILP 305
Query: 310 TGIMFPIR----ASQVCLAFAGNSDPSDVGIFGNVQQHTLEVVYDVAHGQVGFAAGGC 363
+ P+ + C FA S S + G V VV+D A ++GFA C
Sbjct: 306 QQYLRPVEDVATSQDDCYKFA-ISQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSAC 362
>pdb|4DPF|A Chain A, Bace-1 In Complex With A Hea-Macrocyclic Type Inhibitor
pdb|4DPI|A Chain A, Bace-1 In Complex With Hea-Macrocyclic Inhibitor, Mv078512
Length = 391
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 70/178 (39%), Gaps = 16/178 (8%)
Query: 197 SVKFTPLSSAFQGSSFYGLDMTGISVGGEKLPIATTVFSTPGTIIDSGTVITRLPPHAYT 256
S+ +TP+ + +Y + + + + G+ L + ++ +I+DSGT RLP +
Sbjct: 193 SLWYTPIRREW----YYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFE 248
Query: 257 VLKTAFRQLMS--KYPTAPAVSILDTCYDFSEHETITIPKISFFFNGGV-----EVDVDV 309
+ + S K+P + C+ P IS + G V + +
Sbjct: 249 AAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILP 308
Query: 310 TGIMFPIR----ASQVCLAFAGNSDPSDVGIFGNVQQHTLEVVYDVAHGQVGFAAGGC 363
+ P+ + C FA S S + G V VV+D A ++GFA C
Sbjct: 309 QQYLRPVEDVATSQDDCYKFA-ISQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSAC 365
>pdb|1W50|A Chain A, Apo Structure Of Bace (beta Secretase)
pdb|1W51|A Chain A, Bace (Beta Secretase) In Complex With A Nanomolar Non-
Peptidic Inhibitor
pdb|3RSV|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
(R)-3-(2-Amino-6-
O-Tolylquinolin-3-Yl)-N-((R)-2,
2-Dimethyltetrahydro-2h-Pyran-4-Yl)-2- Methylpropanamide
pdb|3RSX|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
6-(Thiophen-3- Yl)quinolin-2-Amine
pdb|3RTH|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
6-(2-(3,3- Dimethylbut-1-Ynyl)phenyl)quinolin-2-Amine
pdb|3RTM|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With 3-(2-
Aminoquinolin-3-Yl)-N-Cyclohexyl-N-Methylpropanamide
pdb|3RTN|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
3-(2-Amino-6-O-
Tolylquinolin-3-Yl)-N-Cyclohexylpropanamide
pdb|3RU1|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With 3-(2-
Aminoquinolin-3-Yl)-N-(Cyclohexylmethyl)propanamide
pdb|3RVI|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
2-((2-Amino-6-O-
Tolylquinolin-3-Yl)methyl)-N-
(Cyclohexylmethyl)pentanamide
pdb|4ACU|A Chain A, Aminoimidazoles As Bace-1 Inhibitors. X-Ray Crystal
Structure Of Beta Secretase Complexed With Compound 14
pdb|4ACX|A Chain A, Aminoimidazoles As Bace-1 Inhibitors. X-Ray Crystal
Structure Of Beta Secretase Complexed With Compound 23
pdb|4DH6|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
(2r)-N-((2s,3r)-
1-(Benzo[d][1,
3]dioxol-5-Yl)-3-Hydroxy-4-((S)-6'-Neopentyl-3',4'-
Dihydrospiro[cyclobutane-1,2'-Pyrano[2,
3-B]pyridine]-4'-Ylamino)
Butan-2-Yl)-2-Methoxypropanamide
pdb|4FRI|A Chain A, Crystal Structure Of Bace1 In Complex With Biarylspiro
Aminooxazoline 6
pdb|4FRJ|A Chain A, Crystal Structure Of Bace1 In Complex With Aminooxazoline
Xanthene 9l
pdb|4FRK|A Chain A, Crystal Structure Of Bace1 In Complex With Aminooxazoline
Xanthene 11a
pdb|4DI2|A Chain A, Crystal Structure Of Bace1 In Complex With
Hydroxyethylamine Inhibitor 37
pdb|4DI2|B Chain B, Crystal Structure Of Bace1 In Complex With
Hydroxyethylamine Inhibitor 37
pdb|4DI2|C Chain C, Crystal Structure Of Bace1 In Complex With
Hydroxyethylamine Inhibitor 37
pdb|4DUS|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
N-((2s,3r)-1-(4-
Fluorophenyl)-3-Hydroxy-4-((6'-Neopentyl-3',4'-
Dihydrospiro[cyclobutane-1,2'-Pyrano[2,
3-B]pyridin]-4'-Yl)amino) Butan-2-Yl)acetamide
pdb|4AZY|A Chain A, Design And Synthesis Of Bace1 Inhibitors With In Vivo
Brain Reduction Of Beta-Amyloid Peptides (Compound 10)
pdb|4B00|A Chain A, Design And Synthesis Of Bace1 Inhibitors With In Vivo
Brain Reduction Of Beta-Amyloid Peptides (Compound
(R)-41)
pdb|4B05|A Chain A, Preclinical Characterization Of Azd3839, A Novel Clinical
Candidate Bace1 Inhibitor For The Treatment Of Alzheimer
Disease
Length = 411
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 70/178 (39%), Gaps = 16/178 (8%)
Query: 197 SVKFTPLSSAFQGSSFYGLDMTGISVGGEKLPIATTVFSTPGTIIDSGTVITRLPPHAYT 256
S+ +TP+ + +Y + + + + G+ L + ++ +I+DSGT RLP +
Sbjct: 206 SLWYTPIRREW----YYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFE 261
Query: 257 VLKTAFRQLMS--KYPTAPAVSILDTCYDFSEHETITIPKISFFFNGGV-----EVDVDV 309
+ + S K+P + C+ P IS + G V + +
Sbjct: 262 AAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILP 321
Query: 310 TGIMFPIR----ASQVCLAFAGNSDPSDVGIFGNVQQHTLEVVYDVAHGQVGFAAGGC 363
+ P+ + C FA S S + G V VV+D A ++GFA C
Sbjct: 322 QQYLRPVEDVATSQDDCYKFA-ISQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSAC 378
>pdb|4EWO|A Chain A, Design And Synthesis Of Potent Hydroxyethylamine (Hea)
Bace-1 Inhibitors
pdb|4EXG|A Chain A, Design And Synthesis Of Potent Hydroxyethylamine (Hea)
Bace-1 Inhibitors
Length = 386
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 70/178 (39%), Gaps = 16/178 (8%)
Query: 197 SVKFTPLSSAFQGSSFYGLDMTGISVGGEKLPIATTVFSTPGTIIDSGTVITRLPPHAYT 256
S+ +TP+ + +Y + + + + G+ L + ++ +I+DSGT RLP +
Sbjct: 188 SLWYTPIRREW----YYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFE 243
Query: 257 VLKTAFRQLMS--KYPTAPAVSILDTCYDFSEHETITIPKISFFFNGGV-----EVDVDV 309
+ + S K+P + C+ P IS + G V + +
Sbjct: 244 AAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILP 303
Query: 310 TGIMFPIR----ASQVCLAFAGNSDPSDVGIFGNVQQHTLEVVYDVAHGQVGFAAGGC 363
+ P+ + C FA S S + G V VV+D A ++GFA C
Sbjct: 304 QQYLRPVEDVATSQDDCYKFA-ISQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSAC 360
>pdb|2HM1|A Chain A, Crystal Structure Of Human Beta-Secretase (Bace) In The
Presence Of An Inhibitor (2)
pdb|2IQG|A Chain A, Crystal Structure Of Hydroxyethyl Secondary Amine-Based
Peptidomimetic Inhibitor Of Human Beta-Secretase (Bace)
pdb|3IVH|A Chain A, Design And Synthesis Of Potent Bace-1 Inhibitors With
Cellular Activity: Structure-Activity Relationship Of P1
Substituents
pdb|3IVI|A Chain A, Design And Synthesis Of Potent Bace-1 Inhibitors With
Cellular Activity: Structure-Activity Relationship Of P1
Substituents
pdb|3IVI|B Chain B, Design And Synthesis Of Potent Bace-1 Inhibitors With
Cellular Activity: Structure-Activity Relationship Of P1
Substituents
pdb|3IVI|C Chain C, Design And Synthesis Of Potent Bace-1 Inhibitors With
Cellular Activity: Structure-Activity Relationship Of P1
Substituents
pdb|3NSH|A Chain A, Bace-1 In Complex With Eln475957
pdb|3NSH|B Chain B, Bace-1 In Complex With Eln475957
pdb|3NSH|C Chain C, Bace-1 In Complex With Eln475957
pdb|3N4L|A Chain A, Bace-1 In Complex With Eln380842
pdb|3N4L|B Chain B, Bace-1 In Complex With Eln380842
pdb|3N4L|C Chain C, Bace-1 In Complex With Eln380842
Length = 406
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 70/178 (39%), Gaps = 16/178 (8%)
Query: 197 SVKFTPLSSAFQGSSFYGLDMTGISVGGEKLPIATTVFSTPGTIIDSGTVITRLPPHAYT 256
S+ +TP+ + +Y + + + + G+ L + ++ +I+DSGT RLP +
Sbjct: 193 SLWYTPIRREW----YYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFE 248
Query: 257 VLKTAFRQLMS--KYPTAPAVSILDTCYDFSEHETITIPKISFFFNGGV-----EVDVDV 309
+ + S K+P + C+ P IS + G V + +
Sbjct: 249 AAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILP 308
Query: 310 TGIMFPIR----ASQVCLAFAGNSDPSDVGIFGNVQQHTLEVVYDVAHGQVGFAAGGC 363
+ P+ + C FA S S + G V VV+D A ++GFA C
Sbjct: 309 QQYLRPVEDVATSQDDCYKFA-ISQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSAC 365
>pdb|3U6A|A Chain A, Rational Design And Synthesis Of Aminopiperazinones As
Beta Secretase (Bace) Inhibitors
pdb|3U6A|B Chain B, Rational Design And Synthesis Of Aminopiperazinones As
Beta Secretase (Bace) Inhibitors
pdb|3U6A|C Chain C, Rational Design And Synthesis Of Aminopiperazinones As
Beta Secretase (Bace) Inhibitors
Length = 390
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 70/178 (39%), Gaps = 16/178 (8%)
Query: 197 SVKFTPLSSAFQGSSFYGLDMTGISVGGEKLPIATTVFSTPGTIIDSGTVITRLPPHAYT 256
S+ +TP+ + +Y + + + + G+ L + ++ +I+DSGT RLP +
Sbjct: 192 SLWYTPIRREW----YYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFE 247
Query: 257 VLKTAFRQLMS--KYPTAPAVSILDTCYDFSEHETITIPKISFFFNGGV-----EVDVDV 309
+ + S K+P + C+ P IS + G V + +
Sbjct: 248 AAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILP 307
Query: 310 TGIMFPIR----ASQVCLAFAGNSDPSDVGIFGNVQQHTLEVVYDVAHGQVGFAAGGC 363
+ P+ + C FA S S + G V VV+D A ++GFA C
Sbjct: 308 QQYLRPVEDVATSQDDCYKFA-ISQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSAC 364
>pdb|3IXK|A Chain A, Potent Beta-Secretase 1 Inhibitor
pdb|3IXK|B Chain B, Potent Beta-Secretase 1 Inhibitor
pdb|3IXK|C Chain C, Potent Beta-Secretase 1 Inhibitor
pdb|3KYR|A Chain A, Bace-1 In Complex With A Norstatine Type Inhibitor
pdb|3KYR|B Chain B, Bace-1 In Complex With A Norstatine Type Inhibitor
pdb|3KYR|C Chain C, Bace-1 In Complex With A Norstatine Type Inhibitor
Length = 405
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 70/178 (39%), Gaps = 16/178 (8%)
Query: 197 SVKFTPLSSAFQGSSFYGLDMTGISVGGEKLPIATTVFSTPGTIIDSGTVITRLPPHAYT 256
S+ +TP+ + +Y + + + + G+ L + ++ +I+DSGT RLP +
Sbjct: 207 SLWYTPIRREW----YYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFE 262
Query: 257 VLKTAFRQLMS--KYPTAPAVSILDTCYDFSEHETITIPKISFFFNGGV-----EVDVDV 309
+ + S K+P + C+ P IS + G V + +
Sbjct: 263 AAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILP 322
Query: 310 TGIMFPIR----ASQVCLAFAGNSDPSDVGIFGNVQQHTLEVVYDVAHGQVGFAAGGC 363
+ P+ + C FA S S + G V VV+D A ++GFA C
Sbjct: 323 QQYLRPVEDVATSQDDCYKFA-ISQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSAC 379
>pdb|2ZJN|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With
N-[1-(5-Chloro-2-Isopropoxy-3-Methoxy-Benzyl)-
Piperidin-4-Yl]-2-(2-Methyl-4-Sulfamoyl-Phenoxy)-
Acetamide
pdb|3H0B|A Chain A, Discovery Of Aminoheterocycles As A Novel Beta-Secretase
Inhibitor Class
pdb|3H0B|B Chain B, Discovery Of Aminoheterocycles As A Novel Beta-Secretase
Inhibitor Class
pdb|3H0B|C Chain C, Discovery Of Aminoheterocycles As A Novel Beta-Secretase
Inhibitor Class
Length = 405
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 70/178 (39%), Gaps = 16/178 (8%)
Query: 197 SVKFTPLSSAFQGSSFYGLDMTGISVGGEKLPIATTVFSTPGTIIDSGTVITRLPPHAYT 256
S+ +TP+ + +Y + + + + G+ L + ++ +I+DSGT RLP +
Sbjct: 207 SLWYTPIRREW----YYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFE 262
Query: 257 VLKTAFRQLMS--KYPTAPAVSILDTCYDFSEHETITIPKISFFFNGGV-----EVDVDV 309
+ + S K+P + C+ P IS + G V + +
Sbjct: 263 AAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILP 322
Query: 310 TGIMFPIR----ASQVCLAFAGNSDPSDVGIFGNVQQHTLEVVYDVAHGQVGFAAGGC 363
+ P+ + C FA S S + G V VV+D A ++GFA C
Sbjct: 323 QQYLRPVEDVATSQDDCYKFA-ISQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSAC 379
>pdb|1YM2|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Aur200
pdb|1YM2|B Chain B, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Aur200
pdb|1YM2|C Chain C, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Aur200
pdb|2F3E|A Chain A, Crystal Structure Of The Bace Complex With Axq093, A
Macrocyclic Inhibitor
pdb|2F3E|B Chain B, Crystal Structure Of The Bace Complex With Axq093, A
Macrocyclic Inhibitor
pdb|2F3E|C Chain C, Crystal Structure Of The Bace Complex With Axq093, A
Macrocyclic Inhibitor
pdb|2F3F|A Chain A, Crystal Structure Of The Bace Complex With Bdf488, A
Macrocyclic Inhibitor
pdb|2F3F|B Chain B, Crystal Structure Of The Bace Complex With Bdf488, A
Macrocyclic Inhibitor
pdb|2F3F|C Chain C, Crystal Structure Of The Bace Complex With Bdf488, A
Macrocyclic Inhibitor
pdb|3DUY|A Chain A, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Afj144
pdb|3DUY|B Chain B, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Afj144
pdb|3DUY|C Chain C, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Afj144
pdb|3DV1|A Chain A, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Arv999
pdb|3DV1|B Chain B, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Arv999
pdb|3DV1|C Chain C, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Arv999
pdb|3DV5|A Chain A, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Bav544
pdb|3DV5|B Chain B, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Bav544
pdb|3DV5|C Chain C, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Bav544
pdb|3K5C|A Chain A, Human Bace-1 Complex With Nb-216
pdb|3K5C|B Chain B, Human Bace-1 Complex With Nb-216
pdb|3K5C|C Chain C, Human Bace-1 Complex With Nb-216
pdb|3K5F|A Chain A, Human Bace-1 Complex With Ayh011
pdb|3K5F|B Chain B, Human Bace-1 Complex With Ayh011
pdb|3K5F|C Chain C, Human Bace-1 Complex With Ayh011
pdb|3K5G|A Chain A, Human Bace-1 Complex With Bjc060
pdb|3K5G|B Chain B, Human Bace-1 Complex With Bjc060
pdb|3K5G|C Chain C, Human Bace-1 Complex With Bjc060
pdb|3PI5|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Bfg356
pdb|3PI5|B Chain B, Crystal Structure Of Human Beta Secretase In Complex With
Bfg356
pdb|3PI5|C Chain C, Crystal Structure Of Human Beta Secretase In Complex With
Bfg356
pdb|3QBH|A Chain A, Structure Based Design, Synthesis And Sar Of Cyclic
Hydroxyethylamine (Hea) Bace-1 Inhibitors
pdb|3QBH|B Chain B, Structure Based Design, Synthesis And Sar Of Cyclic
Hydroxyethylamine (Hea) Bace-1 Inhibitors
pdb|3QBH|C Chain C, Structure Based Design, Synthesis And Sar Of Cyclic
Hydroxyethylamine (Hea) Bace-1 Inhibitors
pdb|3VEU|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Avi326
pdb|3VF3|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bqq711
pdb|3VG1|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bur436, Derived From A Soaking Experiment
pdb|4D83|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bur436, Derived From A Co-Crystallization Experiment
pdb|4D83|B Chain B, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bur436, Derived From A Co-Crystallization Experiment
pdb|4D83|C Chain C, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bur436, Derived From A Co-Crystallization Experiment
pdb|4D88|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bxq490
pdb|4D89|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bxd552, Derived From A Soaking Experiment
pdb|4D8C|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bxd552, Derived From A Co-Crystallization Experiment
pdb|4D8C|B Chain B, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bxd552, Derived From A Co-Crystallization Experiment
pdb|4D8C|C Chain C, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bxd552, Derived From A Co-Crystallization Experiment
Length = 402
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 70/178 (39%), Gaps = 16/178 (8%)
Query: 197 SVKFTPLSSAFQGSSFYGLDMTGISVGGEKLPIATTVFSTPGTIIDSGTVITRLPPHAYT 256
S+ +TP+ + +Y + + + + G+ L + ++ +I+DSGT RLP +
Sbjct: 203 SLWYTPIRREW----YYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFE 258
Query: 257 VLKTAFRQLMS--KYPTAPAVSILDTCYDFSEHETITIPKISFFFNGGV-----EVDVDV 309
+ + S K+P + C+ P IS + G V + +
Sbjct: 259 AAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILP 318
Query: 310 TGIMFPIR----ASQVCLAFAGNSDPSDVGIFGNVQQHTLEVVYDVAHGQVGFAAGGC 363
+ P+ + C FA S S + G V VV+D A ++GFA C
Sbjct: 319 QQYLRPVEDVATSQDDCYKFA-ISQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSAC 375
>pdb|1SGZ|A Chain A, Crystal Structure Of Unbound Beta-Secretase Catalytic
Domain.
pdb|1SGZ|B Chain B, Crystal Structure Of Unbound Beta-Secretase Catalytic
Domain.
pdb|1SGZ|C Chain C, Crystal Structure Of Unbound Beta-Secretase Catalytic
Domain.
pdb|1SGZ|D Chain D, Crystal Structure Of Unbound Beta-Secretase Catalytic
Domain.
pdb|1XS7|D Chain D, Crystal Structure Of A Cycloamide-Urethane-Derived Novel
Inhibitor Bound To Human Brain Memapsin 2
(Beta-Secretase).
pdb|1XN2|A Chain A, New Substrate Binding Pockets For Beta-Secretase.
pdb|1XN2|B Chain B, New Substrate Binding Pockets For Beta-Secretase.
pdb|1XN2|C Chain C, New Substrate Binding Pockets For Beta-Secretase.
pdb|1XN2|D Chain D, New Substrate Binding Pockets For Beta-Secretase.
pdb|1XN3|A Chain A, Crystal Structure Of Beta-Secretase Bound To A Long
Inhibitor With Additional Upstream Residues.
pdb|1XN3|B Chain B, Crystal Structure Of Beta-Secretase Bound To A Long
Inhibitor With Additional Upstream Residues.
pdb|1XN3|C Chain C, Crystal Structure Of Beta-Secretase Bound To A Long
Inhibitor With Additional Upstream Residues.
pdb|1XN3|D Chain D, Crystal Structure Of Beta-Secretase Bound To A Long
Inhibitor With Additional Upstream Residues.
pdb|2G94|A Chain A, Crystal Structure Of Beta-secretase Bound To A Potent And
Highly Selective Inhibitor.
pdb|2G94|B Chain B, Crystal Structure Of Beta-secretase Bound To A Potent And
Highly Selective Inhibitor.
pdb|2G94|C Chain C, Crystal Structure Of Beta-secretase Bound To A Potent And
Highly Selective Inhibitor.
pdb|2G94|D Chain D, Crystal Structure Of Beta-secretase Bound To A Potent And
Highly Selective Inhibitor.
pdb|2P4J|A Chain A, Crystal Structure Of Beta-Secretase Bond To An Inhibitor
With Isophthalamide Derivatives At P2-P3
pdb|2P4J|B Chain B, Crystal Structure Of Beta-Secretase Bond To An Inhibitor
With Isophthalamide Derivatives At P2-P3
pdb|2P4J|C Chain C, Crystal Structure Of Beta-Secretase Bond To An Inhibitor
With Isophthalamide Derivatives At P2-P3
pdb|2P4J|D Chain D, Crystal Structure Of Beta-Secretase Bond To An Inhibitor
With Isophthalamide Derivatives At P2-P3
pdb|2VKM|A Chain A, Crystal Structure Of Grl-8234 Bound To Bace
(Beta-Secretase)
pdb|2VKM|B Chain B, Crystal Structure Of Grl-8234 Bound To Bace
(Beta-Secretase)
pdb|2VKM|C Chain C, Crystal Structure Of Grl-8234 Bound To Bace
(Beta-Secretase)
pdb|2VKM|D Chain D, Crystal Structure Of Grl-8234 Bound To Bace
(Beta-Secretase)
pdb|3UFL|A Chain A, Discovery Of Pyrrolidine-Based B-Secretase Inhibitors:
Lead Advancement Through Conformational Design For
Maintenance Of Ligand Binding Efficiency
Length = 389
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 70/178 (39%), Gaps = 16/178 (8%)
Query: 197 SVKFTPLSSAFQGSSFYGLDMTGISVGGEKLPIATTVFSTPGTIIDSGTVITRLPPHAYT 256
S+ +TP+ + +Y + + + + G+ L + ++ +I+DSGT RLP +
Sbjct: 191 SLWYTPIRREW----YYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFE 246
Query: 257 VLKTAFRQLMS--KYPTAPAVSILDTCYDFSEHETITIPKISFFFNGGV-----EVDVDV 309
+ + S K+P + C+ P IS + G V + +
Sbjct: 247 AAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILP 306
Query: 310 TGIMFPIR----ASQVCLAFAGNSDPSDVGIFGNVQQHTLEVVYDVAHGQVGFAAGGC 363
+ P+ + C FA S S + G V VV+D A ++GFA C
Sbjct: 307 QQYLRPVEDVATSQDDCYKFA-ISQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSAC 363
>pdb|2FDP|A Chain A, Crystal Structure Of Beta-Secretase Complexed With An
Amino- Ethylene Inhibitor
pdb|2FDP|B Chain B, Crystal Structure Of Beta-Secretase Complexed With An
Amino- Ethylene Inhibitor
pdb|2FDP|C Chain C, Crystal Structure Of Beta-Secretase Complexed With An
Amino- Ethylene Inhibitor
pdb|3IXJ|A Chain A, Crystal Structure Of Beta-Secretase 1 In Complex With
Selective Beta-Secretase 1 Inhibitor
pdb|3IXJ|B Chain B, Crystal Structure Of Beta-Secretase 1 In Complex With
Selective Beta-Secretase 1 Inhibitor
pdb|3IXJ|C Chain C, Crystal Structure Of Beta-Secretase 1 In Complex With
Selective Beta-Secretase 1 Inhibitor
pdb|4GID|A Chain A, Structure Of Beta-Secretase Complexed With Inhibitor
pdb|4GID|B Chain B, Structure Of Beta-Secretase Complexed With Inhibitor
pdb|4GID|C Chain C, Structure Of Beta-Secretase Complexed With Inhibitor
pdb|4GID|D Chain D, Structure Of Beta-Secretase Complexed With Inhibitor
Length = 388
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 70/178 (39%), Gaps = 16/178 (8%)
Query: 197 SVKFTPLSSAFQGSSFYGLDMTGISVGGEKLPIATTVFSTPGTIIDSGTVITRLPPHAYT 256
S+ +TP+ + +Y + + + + G+ L + ++ +I+DSGT RLP +
Sbjct: 190 SLWYTPIRREW----YYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFE 245
Query: 257 VLKTAFRQLMS--KYPTAPAVSILDTCYDFSEHETITIPKISFFFNGGV-----EVDVDV 309
+ + S K+P + C+ P IS + G V + +
Sbjct: 246 AAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILP 305
Query: 310 TGIMFPIR----ASQVCLAFAGNSDPSDVGIFGNVQQHTLEVVYDVAHGQVGFAAGGC 363
+ P+ + C FA S S + G V VV+D A ++GFA C
Sbjct: 306 QQYLRPVEDVATSQDDCYKFA-ISQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSAC 362
>pdb|3DM6|A Chain A, Beta-Secretase 1 Complexed With Statine-Based Inhibitor
pdb|3DM6|B Chain B, Beta-Secretase 1 Complexed With Statine-Based Inhibitor
pdb|3DM6|C Chain C, Beta-Secretase 1 Complexed With Statine-Based Inhibitor
pdb|3I25|A Chain A, Potent Beta-Secretase 1 Hydroxyethylene Inhibitor
pdb|3I25|B Chain B, Potent Beta-Secretase 1 Hydroxyethylene Inhibitor
pdb|3I25|C Chain C, Potent Beta-Secretase 1 Hydroxyethylene Inhibitor
Length = 406
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 70/178 (39%), Gaps = 16/178 (8%)
Query: 197 SVKFTPLSSAFQGSSFYGLDMTGISVGGEKLPIATTVFSTPGTIIDSGTVITRLPPHAYT 256
S+ +TP+ + +Y + + + + G+ L + ++ +I+DSGT RLP +
Sbjct: 208 SLWYTPIRREW----YYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFE 263
Query: 257 VLKTAFRQLMS--KYPTAPAVSILDTCYDFSEHETITIPKISFFFNGGV-----EVDVDV 309
+ + S K+P + C+ P IS + G V + +
Sbjct: 264 AAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILP 323
Query: 310 TGIMFPIR----ASQVCLAFAGNSDPSDVGIFGNVQQHTLEVVYDVAHGQVGFAAGGC 363
+ P+ + C FA S S + G V VV+D A ++GFA C
Sbjct: 324 QQYLRPVEDVATSQDDCYKFA-ISQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSAC 380
>pdb|3VV6|A Chain A, Crystal Structure Of Beta Secetase In Complex With
2-Amino-3-Methyl-6- ((1s,
2r)-2-Phenylcyclopropyl)pyrimidin-4(3h)-One
pdb|3VV7|A Chain A, Crystal Structure Of Beta Secetase In Complex With
2-Amino-6-((1s,2r)-
2-(3'-Methoxybiphenyl-3-Yl)cyclopropyl)-3-
Methylpyrimidin-4(3h)-One
pdb|3VV8|A Chain A, Crystal Structure Of Beta Secetase In Complex With
2-Amino-3-Methyl-6-
((1s,
2r)-2-(3'-Methylbiphenyl-4-Yl)cyclopropyl)pyrimidin-
4(3h)-One
Length = 416
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 70/178 (39%), Gaps = 16/178 (8%)
Query: 197 SVKFTPLSSAFQGSSFYGLDMTGISVGGEKLPIATTVFSTPGTIIDSGTVITRLPPHAYT 256
S+ +TP+ + +Y + + + + G+ L + ++ +I+DSGT RLP +
Sbjct: 210 SLWYTPIRREW----YYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFE 265
Query: 257 VLKTAFRQLMS--KYPTAPAVSILDTCYDFSEHETITIPKISFFFNGGV-----EVDVDV 309
+ + S K+P + C+ P IS + G V + +
Sbjct: 266 AAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILP 325
Query: 310 TGIMFPIR----ASQVCLAFAGNSDPSDVGIFGNVQQHTLEVVYDVAHGQVGFAAGGC 363
+ P+ + C FA S S + G V VV+D A ++GFA C
Sbjct: 326 QQYLRPVEDVATSQDDCYKFA-ISQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSAC 382
>pdb|4B1D|A Chain A, New Aminoimidazoles As Bace-1 Inhibitors: From Rational
Design To Ab-Lowering In Brain
pdb|4B1E|A Chain A, New Aminoimidazoles As Bace-1 Inhibitors: From Rational
Design To Ab-Lowering In Brain
Length = 388
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 70/178 (39%), Gaps = 16/178 (8%)
Query: 197 SVKFTPLSSAFQGSSFYGLDMTGISVGGEKLPIATTVFSTPGTIIDSGTVITRLPPHAYT 256
S+ +TP+ + +Y + + + + G+ L + ++ +I+DSGT RLP +
Sbjct: 191 SLWYTPIRREW----YYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFE 246
Query: 257 VLKTAFRQLMS--KYPTAPAVSILDTCYDFSEHETITIPKISFFFNGGV-----EVDVDV 309
+ + S K+P + C+ P IS + G V + +
Sbjct: 247 AAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILP 306
Query: 310 TGIMFPIR----ASQVCLAFAGNSDPSDVGIFGNVQQHTLEVVYDVAHGQVGFAAGGC 363
+ P+ + C FA S S + G V VV+D A ++GFA C
Sbjct: 307 QQYLRPVEDVATSQDDCYKFA-ISQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSAC 363
>pdb|3TPR|A Chain A, Crystal Structure Of Bace1 Complexed With An Inhibitor
pdb|3UQR|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|3UQR|B Chain B, Crystal Structure Of Bace1 With Its Inhibitor
pdb|3UQR|C Chain C, Crystal Structure Of Bace1 With Its Inhibitor
Length = 433
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 70/178 (39%), Gaps = 16/178 (8%)
Query: 197 SVKFTPLSSAFQGSSFYGLDMTGISVGGEKLPIATTVFSTPGTIIDSGTVITRLPPHAYT 256
S+ +TP+ + +Y + + + + G+ L + ++ +I+DSGT RLP +
Sbjct: 227 SLWYTPIRREW----YYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFE 282
Query: 257 VLKTAFRQLMS--KYPTAPAVSILDTCYDFSEHETITIPKISFFFNGGV-----EVDVDV 309
+ + S K+P + C+ P IS + G V + +
Sbjct: 283 AAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILP 342
Query: 310 TGIMFPIR----ASQVCLAFAGNSDPSDVGIFGNVQQHTLEVVYDVAHGQVGFAAGGC 363
+ P+ + C FA S S + G V VV+D A ++GFA C
Sbjct: 343 QQYLRPVEDVATSQDDCYKFA-ISQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSAC 399
>pdb|3CIB|A Chain A, Structure Of Bace Bound To Sch727596
pdb|3CIB|B Chain B, Structure Of Bace Bound To Sch727596
pdb|3CIC|A Chain A, Structure Of Bace Bound To Sch709583
pdb|3CIC|B Chain B, Structure Of Bace Bound To Sch709583
pdb|3CID|A Chain A, Structure Of Bace Bound To Sch726222
pdb|3CID|B Chain B, Structure Of Bace Bound To Sch726222
pdb|4FS4|A Chain A, Structure Of Bace Bound To
(S)-4-(3'-Methoxy-[1,1'-Biphenyl]-3-Yl)-1,
4-Dimethyl-6-Oxotetrahydropyrimidin-2(1h)-Iminium
pdb|4FS4|B Chain B, Structure Of Bace Bound To
(S)-4-(3'-Methoxy-[1,1'-Biphenyl]-3-Yl)-1,
4-Dimethyl-6-Oxotetrahydropyrimidin-2(1h)-Iminium
Length = 390
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 70/178 (39%), Gaps = 16/178 (8%)
Query: 197 SVKFTPLSSAFQGSSFYGLDMTGISVGGEKLPIATTVFSTPGTIIDSGTVITRLPPHAYT 256
S+ +TP+ + +Y + + + + G+ L + ++ +I+DSGT RLP +
Sbjct: 191 SLWYTPIRREW----YYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFE 246
Query: 257 VLKTAFRQLMS--KYPTAPAVSILDTCYDFSEHETITIPKISFFFNGGV-----EVDVDV 309
+ + S K+P + C+ P IS + G V + +
Sbjct: 247 AAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILP 306
Query: 310 TGIMFPIR----ASQVCLAFAGNSDPSDVGIFGNVQQHTLEVVYDVAHGQVGFAAGGC 363
+ P+ + C FA S S + G V VV+D A ++GFA C
Sbjct: 307 QQYLRPVEDVATSQDDCYKFA-ISQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSAC 363
>pdb|3CKP|A Chain A, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|3CKP|B Chain B, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|3CKP|C Chain C, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|3CKR|A Chain A, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|3CKR|B Chain B, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|3CKR|C Chain C, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|4FSL|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Db-Mut) Complex With N-(N-(4-
Acetamido-3-Chloro-5-Methylbenzyl) Carbamimidoyl)-3-(4-
Methoxyphenyl)-5-Methyl-4-Isothiazolecarboxamide
pdb|4FSL|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Db-Mut) Complex With N-(N-(4-
Acetamido-3-Chloro-5-Methylbenzyl) Carbamimidoyl)-3-(4-
Methoxyphenyl)-5-Methyl-4-Isothiazolecarboxamide
pdb|4FSL|D Chain D, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Db-Mut) Complex With N-(N-(4-
Acetamido-3-Chloro-5-Methylbenzyl) Carbamimidoyl)-3-(4-
Methoxyphenyl)-5-Methyl-4-Isothiazolecarboxamide
pdb|4FSL|E Chain E, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Db-Mut) Complex With N-(N-(4-
Acetamido-3-Chloro-5-Methylbenzyl) Carbamimidoyl)-3-(4-
Methoxyphenyl)-5-Methyl-4-Isothiazolecarboxamide
Length = 412
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 70/178 (39%), Gaps = 16/178 (8%)
Query: 197 SVKFTPLSSAFQGSSFYGLDMTGISVGGEKLPIATTVFSTPGTIIDSGTVITRLPPHAYT 256
S+ +TP+ + +Y + + + + G+ L + ++ +I+DSGT RLP +
Sbjct: 206 SLWYTPIRREW----YYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFE 261
Query: 257 VLKTAFRQLMS--KYPTAPAVSILDTCYDFSEHETITIPKISFFFNGGV-----EVDVDV 309
+ + S K+P + C+ P IS + G V + +
Sbjct: 262 AAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILP 321
Query: 310 TGIMFPIR----ASQVCLAFAGNSDPSDVGIFGNVQQHTLEVVYDVAHGQVGFAAGGC 363
+ P+ + C FA S S + G V VV+D A ++GFA C
Sbjct: 322 QQYLRPVEDVATSQDDCYKFA-ISQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSAC 378
>pdb|3BRA|A Chain A, Bace-1 Complexed With Compound 1
pdb|3BUF|A Chain A, Bace-1 Complexed With Compound 2
pdb|3BUG|A Chain A, Bace-1 Complexed With Compound 3
pdb|3BUH|A Chain A, Bace-1 Complexed With Compound 4
Length = 409
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 70/178 (39%), Gaps = 16/178 (8%)
Query: 197 SVKFTPLSSAFQGSSFYGLDMTGISVGGEKLPIATTVFSTPGTIIDSGTVITRLPPHAYT 256
S+ +TP+ + +Y + + + + G+ L + ++ +I+DSGT RLP +
Sbjct: 203 SLWYTPIRREW----YYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFE 258
Query: 257 VLKTAFRQLMS--KYPTAPAVSILDTCYDFSEHETITIPKISFFFNGGV-----EVDVDV 309
+ + S K+P + C+ P IS + G V + +
Sbjct: 259 AAVASIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILP 318
Query: 310 TGIMFPIR----ASQVCLAFAGNSDPSDVGIFGNVQQHTLEVVYDVAHGQVGFAAGGC 363
+ P+ + C FA S S + G V VV+D A ++GFA C
Sbjct: 319 QQYLRPVEDVATSQDDCYKFA-ISQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSAC 375
>pdb|1YM4|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Amk640
pdb|1YM4|B Chain B, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Amk640
pdb|1YM4|C Chain C, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Amk640
pdb|3K5D|A Chain A, Crystal Structure Of Bace-1 In Complex With Ahm178
pdb|3K5D|B Chain B, Crystal Structure Of Bace-1 In Complex With Ahm178
pdb|3K5D|C Chain C, Crystal Structure Of Bace-1 In Complex With Ahm178
pdb|3MSK|A Chain A, Fragment Based Discovery And Optimisation Of Bace-1
Inhibitors
pdb|3MSL|A Chain A, Fragment Based Discovery And Optimisation Of Bace-1
Inhibitors
pdb|3S2O|A Chain A, Fragment Based Discovery And Optimisation Of Bace-1
Inhibitors
pdb|4D85|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bvi151
Length = 408
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 70/178 (39%), Gaps = 16/178 (8%)
Query: 197 SVKFTPLSSAFQGSSFYGLDMTGISVGGEKLPIATTVFSTPGTIIDSGTVITRLPPHAYT 256
S+ +TP+ + +Y + + + + G+ L + ++ +I+DSGT RLP +
Sbjct: 203 SLWYTPIRREW----YYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFE 258
Query: 257 VLKTAFRQLMS--KYPTAPAVSILDTCYDFSEHETITIPKISFFFNGGV-----EVDVDV 309
+ + S K+P + C+ P IS + G V + +
Sbjct: 259 AAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILP 318
Query: 310 TGIMFPIR----ASQVCLAFAGNSDPSDVGIFGNVQQHTLEVVYDVAHGQVGFAAGGC 363
+ P+ + C FA S S + G V VV+D A ++GFA C
Sbjct: 319 QQYLRPVEDVATSQDDCYKFA-ISQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSAC 375
>pdb|2ZHR|A Chain A, Crystal Structure Of Bace1 In Complex With Om99-2 At Ph
5.0
pdb|2ZHR|B Chain B, Crystal Structure Of Bace1 In Complex With Om99-2 At Ph
5.0
pdb|2ZHS|A Chain A, Crystal Structure Of Bace1 At Ph 4.0
pdb|2ZHT|A Chain A, Crystal Structure Of Bace1 At Ph 4.5
pdb|2ZHU|A Chain A, Crystal Structure Of Bace1 At Ph 5.0
pdb|2ZHV|A Chain A, Crystal Structure Of Bace1 At Ph 7.0
Length = 411
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 70/178 (39%), Gaps = 16/178 (8%)
Query: 197 SVKFTPLSSAFQGSSFYGLDMTGISVGGEKLPIATTVFSTPGTIIDSGTVITRLPPHAYT 256
S+ +TP+ + +Y + + + + G+ L + ++ +I+DSGT RLP +
Sbjct: 205 SLWYTPIRREW----YYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFE 260
Query: 257 VLKTAFRQLMS--KYPTAPAVSILDTCYDFSEHETITIPKISFFFNGGV-----EVDVDV 309
+ + S K+P + C+ P IS + G V + +
Sbjct: 261 AAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILP 320
Query: 310 TGIMFPIR----ASQVCLAFAGNSDPSDVGIFGNVQQHTLEVVYDVAHGQVGFAAGGC 363
+ P+ + C FA S S + G V VV+D A ++GFA C
Sbjct: 321 QQYLRPVEDVATSQDDCYKFA-ISQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSAC 377
>pdb|3L58|A Chain A, Structure Of Bace Bound To Sch589432
pdb|3L58|B Chain B, Structure Of Bace Bound To Sch589432
pdb|3L59|A Chain A, Structure Of Bace Bound To Sch710413
pdb|3L59|B Chain B, Structure Of Bace Bound To Sch710413
pdb|3L5B|A Chain A, Structure Of Bace Bound To Sch713601
pdb|3L5B|B Chain B, Structure Of Bace Bound To Sch713601
pdb|3L5C|A Chain A, Structure Of Bace Bound To Sch723871
pdb|3L5C|B Chain B, Structure Of Bace Bound To Sch723871
pdb|3L5D|A Chain A, Structure Of Bace Bound To Sch723873
pdb|3L5D|B Chain B, Structure Of Bace Bound To Sch723873
pdb|3L5E|A Chain A, Structure Of Bace Bound To Sch736062
pdb|3L5E|B Chain B, Structure Of Bace Bound To Sch736062
pdb|3L5F|A Chain A, Structure Of Bace Bound To Sch736201
pdb|3L5F|B Chain B, Structure Of Bace Bound To Sch736201
pdb|4DJU|A Chain A, Structure Of Bace Bound To
2-Imino-3-Methyl-5,5-Diphenylimidazolidin- 4-One
pdb|4DJU|B Chain B, Structure Of Bace Bound To
2-Imino-3-Methyl-5,5-Diphenylimidazolidin- 4-One
pdb|4DJV|A Chain A, Structure Of Bace Bound To
2-Imino-5-(3'-Methoxy-[1,1'-Biphenyl]-3-
Yl)-3-Methyl-5-Phenylimidazolidin-4-One
pdb|4DJV|B Chain B, Structure Of Bace Bound To
2-Imino-5-(3'-Methoxy-[1,1'-Biphenyl]-3-
Yl)-3-Methyl-5-Phenylimidazolidin-4-One
pdb|4DJW|A Chain A, Structure Of Bace Bound To
2-Imino-3-Methyl-5-Phenyl-5-(3-(Pyridin-3-
Yl)phenyl)imidazolidin-4-One
pdb|4DJW|B Chain B, Structure Of Bace Bound To
2-Imino-3-Methyl-5-Phenyl-5-(3-(Pyridin-3-
Yl)phenyl)imidazolidin-4-One
pdb|4DJX|A Chain A, Structure Of Bace Bound To
5-(3-(5-Chloropyridin-3-Yl)phenyl)-5-
Cyclopropyl-2-Imino-3-Methylimidazolidin-4-One
pdb|4DJX|B Chain B, Structure Of Bace Bound To
5-(3-(5-Chloropyridin-3-Yl)phenyl)-5-
Cyclopropyl-2-Imino-3-Methylimidazolidin-4-One
pdb|4DJY|A Chain A, Structure Of Bace Bound To
(R)-5-Cyclopropyl-2-Imino-3-Methyl-5-(3-(5-
(Prop-1-Yn-1-Yl)pyridin-3-Yl)phenyl)imidazolidin-4-One
pdb|4DJY|B Chain B, Structure Of Bace Bound To
(R)-5-Cyclopropyl-2-Imino-3-Methyl-5-(3-(5-
(Prop-1-Yn-1-Yl)pyridin-3-Yl)phenyl)imidazolidin-4-One
pdb|4H1E|A Chain A, Structure Of Bace-1 Bound To
(7ar)-6-Benzoyl-7a-(4-(3-Cyanophenyl)
Thiophen-2-Yl)-3-Methyl-4-Oxohexahydro-1h-Pyrrolo[3,
4-D]pyrimidin- 2(3h)-Iminium
pdb|4H1E|B Chain B, Structure Of Bace-1 Bound To
(7ar)-6-Benzoyl-7a-(4-(3-Cyanophenyl)
Thiophen-2-Yl)-3-Methyl-4-Oxohexahydro-1h-Pyrrolo[3,
4-D]pyrimidin- 2(3h)-Iminium
pdb|4H3J|A Chain A, Structure Of Bace Bound To
2-Fluoro-5-(5-(2-Imino-3-Methyl-4-Oxo-6-
Phenyloctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl)thiophen-2-Yl) Benzonitrile
pdb|4H3J|B Chain B, Structure Of Bace Bound To
2-Fluoro-5-(5-(2-Imino-3-Methyl-4-Oxo-6-
Phenyloctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl)thiophen-2-Yl) Benzonitrile
pdb|4HA5|A Chain A, Structure Of Bace Bound To
(S)-3-(5-(2-Imino-1,4-Dimethyl-6-
Oxohexahydropyrimidin-4-Yl)thiophen-3-Yl)benzonitrile
pdb|4HA5|B Chain B, Structure Of Bace Bound To
(S)-3-(5-(2-Imino-1,4-Dimethyl-6-
Oxohexahydropyrimidin-4-Yl)thiophen-3-Yl)benzonitrile
pdb|4H3F|A Chain A, Structure Of Bace Bound To
3-(5-((7ar)-2-Imino-6-(6-Methoxypyridin-2-
Yl)-3-Methyl-4-Oxooctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl) Thiophen-3-Yl)benzonitrile
pdb|4H3F|B Chain B, Structure Of Bace Bound To
3-(5-((7ar)-2-Imino-6-(6-Methoxypyridin-2-
Yl)-3-Methyl-4-Oxooctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl) Thiophen-3-Yl)benzonitrile
pdb|4H3G|A Chain A, Structure Of Bace Bound To
2-((7ar)-7a-(4-(3-Cyanophenyl)thiophen-2-
Yl)-2-Imino-3-Methyl-4-Oxohexahydro-1h-Pyrrolo[3,
4-D]pyrimidin-6(2h)- Yl)nicotinonitrile
pdb|4H3G|B Chain B, Structure Of Bace Bound To
2-((7ar)-7a-(4-(3-Cyanophenyl)thiophen-2-
Yl)-2-Imino-3-Methyl-4-Oxohexahydro-1h-Pyrrolo[3,
4-D]pyrimidin-6(2h)- Yl)nicotinonitrile
pdb|4H3I|A Chain A, Structure Of Bace Bound To
3-(5-((7ar)-2-Imino-6-(3-Methoxypyridin-2-
Yl)-3-Methyl-4-Oxooctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl) Thiophen-3-Yl)benzonitrile
pdb|4H3I|B Chain B, Structure Of Bace Bound To
3-(5-((7ar)-2-Imino-6-(3-Methoxypyridin-2-
Yl)-3-Methyl-4-Oxooctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl) Thiophen-3-Yl)benzonitrile
Length = 414
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 70/178 (39%), Gaps = 16/178 (8%)
Query: 197 SVKFTPLSSAFQGSSFYGLDMTGISVGGEKLPIATTVFSTPGTIIDSGTVITRLPPHAYT 256
S+ +TP+ + +Y + + + + G+ L + ++ +I+DSGT RLP +
Sbjct: 208 SLWYTPIRREW----YYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFE 263
Query: 257 VLKTAFRQLMS--KYPTAPAVSILDTCYDFSEHETITIPKISFFFNGGV-----EVDVDV 309
+ + S K+P + C+ P IS + G V + +
Sbjct: 264 AAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILP 323
Query: 310 TGIMFPIR----ASQVCLAFAGNSDPSDVGIFGNVQQHTLEVVYDVAHGQVGFAAGGC 363
+ P+ + C FA S S + G V VV+D A ++GFA C
Sbjct: 324 QQYLRPVEDVATSQDDCYKFA-ISQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSAC 380
>pdb|3HVG|A Chain A, Structure Of Bace (Beta Secretase) In Complex With Ev0
pdb|3HVG|B Chain B, Structure Of Bace (Beta Secretase) In Complex With Ev0
pdb|3HVG|C Chain C, Structure Of Bace (Beta Secretase) In Complex With Ev0
pdb|3HW1|A Chain A, Structure Of Bace (Beta Secretase) In Complex With Ligand
Ev2
pdb|3HW1|B Chain B, Structure Of Bace (Beta Secretase) In Complex With Ligand
Ev2
pdb|3HW1|C Chain C, Structure Of Bace (Beta Secretase) In Complex With Ligand
Ev2
pdb|3MSJ|A Chain A, Structure Of Bace (Beta Secretase) In Complex With
Inhibitor
pdb|3MSJ|B Chain B, Structure Of Bace (Beta Secretase) In Complex With
Inhibitor
pdb|3MSJ|C Chain C, Structure Of Bace (Beta Secretase) In Complex With
Inhibitor
Length = 411
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 70/178 (39%), Gaps = 16/178 (8%)
Query: 197 SVKFTPLSSAFQGSSFYGLDMTGISVGGEKLPIATTVFSTPGTIIDSGTVITRLPPHAYT 256
S+ +TP+ + +Y + + + + G+ L + ++ +I+DSGT RLP +
Sbjct: 206 SLWYTPIRREW----YYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFE 261
Query: 257 VLKTAFRQLMS--KYPTAPAVSILDTCYDFSEHETITIPKISFFFNGGV-----EVDVDV 309
+ + S K+P + C+ P IS + G V + +
Sbjct: 262 AAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILP 321
Query: 310 TGIMFPIR----ASQVCLAFAGNSDPSDVGIFGNVQQHTLEVVYDVAHGQVGFAAGGC 363
+ P+ + C FA S S + G V VV+D A ++GFA C
Sbjct: 322 QQYLRPVEDVATSQDDCYKFA-ISQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSAC 378
>pdb|2QZL|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Ixs
Length = 411
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 70/178 (39%), Gaps = 16/178 (8%)
Query: 197 SVKFTPLSSAFQGSSFYGLDMTGISVGGEKLPIATTVFSTPGTIIDSGTVITRLPPHAYT 256
S+ +TP+ + +Y + + + + G+ L + ++ +I+DSGT RLP +
Sbjct: 213 SLWYTPIRREW----YYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFE 268
Query: 257 VLKTAFRQLMS--KYPTAPAVSILDTCYDFSEHETITIPKISFFFNGGV-----EVDVDV 309
+ + S K+P + C+ P IS + G V + +
Sbjct: 269 AAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILP 328
Query: 310 TGIMFPIR----ASQVCLAFAGNSDPSDVGIFGNVQQHTLEVVYDVAHGQVGFAAGGC 363
+ P+ + C FA S S + G V VV+D A ++GFA C
Sbjct: 329 QQYLRPVEDVATSQDDCYKFA-ISQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSAC 385
>pdb|3D91|A Chain A, Human Renin In Complex With Remikiren
pdb|3D91|B Chain B, Human Renin In Complex With Remikiren
pdb|3G6Z|A Chain A, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3G6Z|B Chain B, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3G70|A Chain A, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3G70|B Chain B, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3K1W|A Chain A, New Classes Of Potent And Bioavailable Human Renin
Inhibitors
pdb|3K1W|B Chain B, New Classes Of Potent And Bioavailable Human Renin
Inhibitors
pdb|3OWN|A Chain A, Potent Macrocyclic Renin Inhibitors
pdb|3OWN|B Chain B, Potent Macrocyclic Renin Inhibitors
Length = 341
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 38/88 (43%), Gaps = 9/88 (10%)
Query: 21 NYIVTVGIGTPKRKFSLIFDTGSDLTW---TQCKPCVGFCYQQKEKIFDPKRSKSYRNXX 77
Y +GIGTP + F ++FDTGS W ++C C K+FD S SY++
Sbjct: 19 QYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYH--KLFDASDSSSYKH-- 74
Query: 78 XXXXXXXXLESATGNIPGCASNKTCVYG 105
L +TG + G S G
Sbjct: 75 --NGTELTLRYSTGTVSGFLSQDIITVG 100
>pdb|2VIE|A Chain A, Human Bace-1 In Complex With
N-((1s,2r)-1-Benzyl-2-Hydroxy-
3-((1,1,
5-Trimethylhexyl)amino)propyl)-3-(Ethylamino)-5-(2-
Oxopyrrolidin-1-Yl)benzamide
pdb|2VIJ|A Chain A, Human Bace-1 In Complex With
3-(1,1-Dioxidotetrahydro-2h-1,
2-Thiazin-2-Yl)-5-(Ethylamino)-N-((1s,2r)-2-Hydroxy-1-(
Phenylmethyl)-3-(1,2,3,4-Tetrahydro-1-Naphthalenylamino)
Propyl)benzamide
pdb|2VIY|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-3-(((1s)-2-(
Cyclohexylamino)-1-Methyl-2-Oxoethyl)amino)-2-Hydroxy-1-
( Phenylmethyl)propyl)-3-(Pentylsulfonyl)benzamide
pdb|2VIZ|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-3-(((1s)-2-(
Cyclohexylamino)-1-methyl-2-oxoethyl)amino)-2-hydroxy-1-
(
Phenylmethyl)propyl)-3-(2-oxo-1-pyrrolidinyl)-5-
(propyloxy) Benzamide
pdb|2VJ6|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-3-(((1s)-2-(
Cyclohexylamino)-1-Methyl-2-Oxoethyl)amino)-2-Hydroxy-1-
( Phenylmethyl)propyl)-3-(Ethylamino)-5-(2-Oxo-1-
Pyrrolidinyl)benzamide
pdb|2VJ7|A Chain A, Human Bace-1 In Complex With 3-(Ethylamino)-N-((1s,2r)-2-
Hydroxy-1-(Phenylmethyl)-3-(((3-(Trifluoromethyl)phenyl)
Methyl)amino)propyl)-5-(2-Oxo-1-Pyrrolidinyl)benzamide
pdb|2VJ9|A Chain A, Human Bace-1 In Complex With
N-((1s,2r)-3-(Cyclohexylamino)-
2-Hydroxy-1-(Phenylmethyl)propyl)-3-(Ethylamino)-5-(2-
Oxo- 1-Pyrrolidinyl)benzamide
pdb|2VNM|A Chain A, Human Bace-1 In Complex With
3-(1,1-Dioxidotetrahydro-2h-1,
2-Thiazin-2-Yl)-5-(Ethylamino)-N-((1s,2r)-2-Hydroxy-1-(
Phenylmethyl)-3-(((3-
(Trifluoromethyl)phenyl)methyl)amino) Propyl)benzamide
pdb|2VNN|A Chain A, Human Bace-1 In Complex With
7-Ethyl-N-((1s,2r)-2-Hydroxy-1-
(Phenylmethyl)-3-(((3-
(Trifluoromethyl)phenyl)methyl)amino)
Propyl)-1-Methyl-3,4-Dihydro-1h-(1,2,5)thiadiazepino(3,
4,5- Hi)indole-9-Carboxamide 2,2-Dioxide
pdb|2WF4|A Chain A, Human Bace-1 In Complex With
6-Ethyl-1-Methyl-N-((1s)-2-Oxo-
1-(Phenylmethyl)-3-(Tetrahydro-2h-Pyran-4-
Ylamino)propyl)-
1,3,4,6-Tetrahydro(1,2)thiazepino(5,4,3-Cd)indole-8-
Carboxamide 2,2-Dioxide
pdb|2WEZ|A Chain A, Human Bace-1 In Complex With
1-Ethyl-N-((1s,2r)-2-Hydroxy-3-
(((3-(Methyloxy)phenyl)methyl)amino)-1-(Phenylmethyl)
Propyl)-4-(2-Oxo-1-Pyrrolidinyl)-1h-Indole-6-Carboxamide
pdb|2WF0|A Chain A, Human Bace-1 In Complex With
4-Ethyl-N-((1s,2r)-2-Hydroxy-1-
(Phenylmethyl)-3-(((3-
(Trifluoromethyl)phenyl)methyl)amino)
Propyl)-8-(2-Oxo-1-Pyrrolidinyl)-6-Quinolinecarboxamide
pdb|2WF1|A Chain A, Human Bace-1 In Complex With
7-Ethyl-N-((1s,2r)-2-Hydroxy-3-
(((3-(Methyloxy)phenyl(Methyl)amino)-1-(Phenylmethyl)
Propyl)-1-Methyl-3,4-Dihydro-1h-(1,2,5)thiadiazepino(3,
4,5- Hi)indole-9-Carboxamide 2,2-Dioxide
pdb|2WF2|A Chain A, Human Bace-1 In Complex With
8-Ethyl-N-((1s,2r)-2-Hydroxy-3-
(((3-(Methyloxy)phenyl)methyl)amino)-1-(Phenylmethyl)
Propyl)-1-Methyl-3,4,7,8-Tetrahydro-1h,6h-(1,2,5)
Thiadiazepino(5,4,3-De)quinoxaline-10-Carboxamide 2,2-
Dioxide
pdb|2WF3|A Chain A, Human Bace-1 In Complex With 6-(Ethylamino)-N-((1s,2r)-2-
Hydroxy-3-(((3-(Methyloxy)phenyl)methyl)amino)-1-(
Phenylmethyl)propyl)-1-Methyl-1,3,4,5-Tetrahydro-2,1-
Benzothiazepine-8-Carboxamide 2,2-Dioxide
pdb|2XFI|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-3-(((1s)-2-(
Cyclohexylamino)-1-Methyl-2-Oxoethyl)amino)-2-Hydroxy-1-
( Phenylmethyl)propyl)-3-((Methylsulfonyl)(Phenyl)amino)
Benzamide
pdb|2XFJ|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-3-(((1s)-2-(
Cyclohexylamino)-1-Methyl-2-Oxoethyl)amino)-2-Hydroxy-1-
( Phenylmethyl)propyl)-3-(Ethylamino)-5-(2-Oxo-1-
Pyrrolidinyl)benzamide
pdb|2XFK|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-3-(((1s)-2-(
Cyclohexylamino)-1-Methyl-2-Oxoethyl)amino)-2-Hydroxy-1-
(
Phenylmethyl)propyl)-3-(Ethylamino)-5-((Methylsulfonyl)(
Phenyl)amino)benzamide
Length = 392
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 70/178 (39%), Gaps = 16/178 (8%)
Query: 197 SVKFTPLSSAFQGSSFYGLDMTGISVGGEKLPIATTVFSTPGTIIDSGTVITRLPPHAYT 256
S+ +TP+ + +Y + + + + G+ L + ++ +I+DSGT RLP +
Sbjct: 188 SLWYTPIRREW----YYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFE 243
Query: 257 VLKTAFRQLMS--KYPTAPAVSILDTCYDFSEHETITIPKISFFFNGGV-----EVDVDV 309
+ + S K+P + C+ P IS + G V + +
Sbjct: 244 AAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTQQSFRITILP 303
Query: 310 TGIMFPIR----ASQVCLAFAGNSDPSDVGIFGNVQQHTLEVVYDVAHGQVGFAAGGC 363
+ P+ + C FA S S + G V VV+D A ++GFA C
Sbjct: 304 QQYLRPVEDVATSQDDCYKFA-ISQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSAC 360
>pdb|2QU2|A Chain A, Bace1 With Compound 1
pdb|2QU3|A Chain A, Bace1 With Compound 2
pdb|2ZDZ|A Chain A, X-Ray Structure Of Bace-1 In Complex With Compound 3.B.10
pdb|2ZE1|A Chain A, X-Ray Structure Of Bace-1 In Complex With Compound 6g
pdb|3IGB|A Chain A, Bace-1 With Compound 3
pdb|3IN3|A Chain A, Bace1 With Compound 30
pdb|3IN4|A Chain A, Bace1 With Compound 38
pdb|3IND|A Chain A, Bace1 With The Aminohydantoin Compound 29
pdb|3INE|A Chain A, Bace1 With The Aminohydantoin Compound S-34
pdb|3INF|A Chain A, Bace1 With The Aminohydantoin Compound 37
pdb|3INH|A Chain A, Bace1 With The Aminohydantoin Compound R-58
pdb|3LHG|A Chain A, Bace1 In Complex With The Aminohydantoin Compound 4g
pdb|3L38|A Chain A, Bace1 In Complex With The Aminopyridine Compound 44
pdb|3L3A|A Chain A, Bace-1 With The Aminopyridine Compound 32
pdb|3OOZ|A Chain A, Bace1 In Complex With The Aminohydantoin Compound 102
pdb|3S7L|A Chain A, Pyrazolyl And Thienyl Aminohydantoins As Potent Bace1
Inhibitors
pdb|3S7M|A Chain A, Pyrazolyl And Thienyl Aminohydantoins As Potent Bace1
Inhibitors
Length = 415
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 70/178 (39%), Gaps = 16/178 (8%)
Query: 197 SVKFTPLSSAFQGSSFYGLDMTGISVGGEKLPIATTVFSTPGTIIDSGTVITRLPPHAYT 256
S+ +TP+ + +Y + + + + G+ L + ++ +I+DSGT RLP +
Sbjct: 203 SLWYTPIRREW----YYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFE 258
Query: 257 VLKTAFRQLMS--KYPTAPAVSILDTCYDFSEHETITIPKISFFFNGGV-----EVDVDV 309
+ + S K+P + C+ P IS + G V + +
Sbjct: 259 AAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILP 318
Query: 310 TGIMFPIR----ASQVCLAFAGNSDPSDVGIFGNVQQHTLEVVYDVAHGQVGFAAGGC 363
+ P+ + C FA S S + G V VV+D A ++GFA C
Sbjct: 319 QQYLRPVEDVATSQDDCYKFA-ISQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSAC 375
>pdb|3FV3|A Chain A, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|B Chain B, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|C Chain C, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|D Chain D, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|E Chain E, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|F Chain F, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|G Chain G, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|H Chain H, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3TNE|A Chain A, The Crystal Structure Of Protease Sapp1p From Candida
Parapsilosis In Complex With The Hiv Protease Inhibitor
Ritonavir
pdb|3TNE|B Chain B, The Crystal Structure Of Protease Sapp1p From Candida
Parapsilosis In Complex With The Hiv Protease Inhibitor
Ritonavir
Length = 339
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 73/320 (22%), Positives = 124/320 (38%), Gaps = 61/320 (19%)
Query: 11 AIHGSVVGSG-NYIVTVGIGTPKRKFSLIFDTGSDLTW-----TQCKPCVGFCYQQKEKI 64
+I S++ G +Y V +G+ K++ ++I DTGS W QC V C +
Sbjct: 2 SISLSLINEGPSYASKVSVGSNKQQQTVIIDTGSSDFWVVDSNAQCGKGVD-C--KSSGT 58
Query: 65 FDPKRSKSYRNXXXXXXXXXXLESATGNIPGCASNKTCVYGIQYGDSSFSVGFFAKETLT 124
F P S SY+N G A + I+YGD S S G + K+T+T
Sbjct: 59 FTPSSSSSYKNL------------------GAA------FTIRYGDGSTSQGTWGKDTVT 94
Query: 125 LT------------SKDVFPKFLLGCG-QNNXXXXXXXXXXXXXXXNKISLVYQTASKYK 171
+ ++ + +LG G +N + + + + K +
Sbjct: 95 INGVSITGQQIADVTQTSVDQGILGIGYTSNEAVYDTSGRQTTPNYDNVPVTLKKQGKIR 154
Query: 172 KR-FSYCLPSSSSSTGHLTFGPGIKKSVKFTPLSSAFQGSSFYGLDMTGISVGGEKLPIA 230
+S L S S+ TG + FG G+ + K++ A Q +S L IS+ L +
Sbjct: 155 TNAYSLYLNSPSAETGTIIFG-GVDNA-KYSGKLVAEQVTSSQALT---ISLASVNLKGS 209
Query: 231 TTVFSTPGTIIDSGTVITRLPPHAYTVLKTAFRQLMSKYPTAPAVSILD--------TCY 282
+ F G ++DSGT +T P L + + + +D T +
Sbjct: 210 SFSFG-DGALLDSGTTLTYFPSDFAAQLADKAGARLVQVARDQYLYFIDCNTDTSGTTVF 268
Query: 283 DFSEHETITIPKISFFFNGG 302
+F IT+P + + G
Sbjct: 269 NFGNGAKITVPNTEYVYQNG 288
>pdb|1TQF|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2B8L|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2B8V|A Chain A, Crystal Structure Of Human Beta-Secretase Complexed With
L- L000430,469
pdb|2IRZ|A Chain A, Crystal Structure Of Human Beta-Secretase Complexed With
Inhibitor
pdb|2IS0|A Chain A, Crystal Structure Of Human Beta-Secretase Complexed With
Inhibitor
pdb|2PH6|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2OAH|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2P8H|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2NTR|A Chain A, Crystal Structure Of Human Bace-1 Bound To Inhibitor
pdb|2PH8|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2QZK|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
I21
pdb|2ZJM|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With
N-[1-(5-Chloro-2-Isopropoxy-3-Methoxy-Benzyl)-
Piperidin-4-Yl]-2-(4-Sulfamoyl-Phenoxy)-Acetamide
pdb|3FKT|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Spiropiperdine Iminohydantoin Inhibitor
Length = 405
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 70/178 (39%), Gaps = 16/178 (8%)
Query: 197 SVKFTPLSSAFQGSSFYGLDMTGISVGGEKLPIATTVFSTPGTIIDSGTVITRLPPHAYT 256
S+ +TP+ + +Y + + + + G+ L + ++ +I+DSGT RLP +
Sbjct: 207 SLWYTPIRREW----YYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFE 262
Query: 257 VLKTAFRQLMS--KYPTAPAVSILDTCYDFSEHETITIPKISFFFNGGV-----EVDVDV 309
+ + S K+P + C+ P IS + G V + +
Sbjct: 263 AAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILP 322
Query: 310 TGIMFPIR----ASQVCLAFAGNSDPSDVGIFGNVQQHTLEVVYDVAHGQVGFAAGGC 363
+ P+ + C FA S S + G V VV+D A ++GFA C
Sbjct: 323 QQYLRPVEDVATSQDDCYKFA-ISQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSAC 379
>pdb|3TPJ|A Chain A, Apo Structure Of Bace1
pdb|3TPL|A Chain A, Apo Structure Of Bace1
pdb|3TPL|B Chain B, Apo Structure Of Bace1
pdb|3TPL|C Chain C, Apo Structure Of Bace1
pdb|3TPP|A Chain A, Crystal Structure Of Bace1 Complexed With An Inhibitor
pdb|3UQP|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|3UQU|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|3UQW|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|3UQX|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|4DV9|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|4DVF|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|4DVF|B Chain B, Crystal Structure Of Bace1 With Its Inhibitor
pdb|4FGX|A Chain A, Crystal Structure Of Bace1 With Novel Inhibitor
Length = 433
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 70/178 (39%), Gaps = 16/178 (8%)
Query: 197 SVKFTPLSSAFQGSSFYGLDMTGISVGGEKLPIATTVFSTPGTIIDSGTVITRLPPHAYT 256
S+ +TP+ + +Y + + + + G+ L + ++ +I+DSGT RLP +
Sbjct: 227 SLWYTPIRREW----YYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFE 282
Query: 257 VLKTAFRQLMS--KYPTAPAVSILDTCYDFSEHETITIPKISFFFNGGV-----EVDVDV 309
+ + S K+P + C+ P IS + G V + +
Sbjct: 283 AAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILP 342
Query: 310 TGIMFPIR----ASQVCLAFAGNSDPSDVGIFGNVQQHTLEVVYDVAHGQVGFAAGGC 363
+ P+ + C FA S S + G V VV+D A ++GFA C
Sbjct: 343 QQYLRPVEDVATSQDDCYKFA-ISQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSAC 399
>pdb|2WJO|A Chain A, Human Bace (Beta Secretase) In Complex With
Cyclohexanecarboxylic Acid (2-(2-Am Ino-6-Phenoxy-4h-
Quinazolin-3-Yl)-2-Cyclohexyl-Ethyl)-Amide
Length = 412
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 70/178 (39%), Gaps = 16/178 (8%)
Query: 197 SVKFTPLSSAFQGSSFYGLDMTGISVGGEKLPIATTVFSTPGTIIDSGTVITRLPPHAYT 256
S+ +TP+ + +Y + + + + G+ L + ++ +I+DSGT RLP +
Sbjct: 191 SLWYTPIRREW----YYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFE 246
Query: 257 VLKTAFRQLMS--KYPTAPAVSILDTCYDFSEHETITIPKISFFFNGGV-----EVDVDV 309
+ + S K+P + C+ P IS + G V + +
Sbjct: 247 AAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILP 306
Query: 310 TGIMFPIR----ASQVCLAFAGNSDPSDVGIFGNVQQHTLEVVYDVAHGQVGFAAGGC 363
+ P+ + C FA S S + G V VV+D A ++GFA C
Sbjct: 307 QQYLRPVEDVATSQDDCYKFA-ISQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSAC 363
>pdb|3QI1|A Chain A, Design And Synthesis Of Hydroxyethylamine (Hea) Bace-1
Inhibitors: Prime Side Chromane-Containing Inhibitors
Length = 408
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 70/178 (39%), Gaps = 16/178 (8%)
Query: 197 SVKFTPLSSAFQGSSFYGLDMTGISVGGEKLPIATTVFSTPGTIIDSGTVITRLPPHAYT 256
S+ +TP+ + +Y + + + + G+ L + ++ +I+DSGT RLP +
Sbjct: 203 SLWYTPIRREW----YYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFE 258
Query: 257 VLKTAFRQLMS--KYPTAPAVSILDTCYDFSEHETITIPKISFFFNGGV-----EVDVDV 309
+ + S K+P + C+ P IS + G V + +
Sbjct: 259 AAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILP 318
Query: 310 TGIMFPIR----ASQVCLAFAGNSDPSDVGIFGNVQQHTLEVVYDVAHGQVGFAAGGC 363
+ P+ + C FA S S + G V VV+D A ++GFA C
Sbjct: 319 QQYLRPVEDVATSQDDCYKFA-ISQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSAC 375
>pdb|3EXO|A Chain A, Crystal Structure Of Bace1 Bound To Inhibitor
Length = 413
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 70/178 (39%), Gaps = 16/178 (8%)
Query: 197 SVKFTPLSSAFQGSSFYGLDMTGISVGGEKLPIATTVFSTPGTIIDSGTVITRLPPHAYT 256
S+ +TP+ + +Y + + + + G+ L + ++ +I+DSGT RLP +
Sbjct: 207 SLWYTPIRREW----YYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFE 262
Query: 257 VLKTAFRQLMS--KYPTAPAVSILDTCYDFSEHETITIPKISFFFNGGV-----EVDVDV 309
+ + S K+P + C+ P IS + G V + +
Sbjct: 263 AAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILP 322
Query: 310 TGIMFPIR----ASQVCLAFAGNSDPSDVGIFGNVQQHTLEVVYDVAHGQVGFAAGGC 363
+ P+ + C FA S S + G V VV+D A ++GFA C
Sbjct: 323 QQYLRPVEDVATSQDDCYKFA-ISQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSAC 379
>pdb|2BKS|A Chain A, Crystal Structure Of Renin-Pf00074777 Complex
pdb|2BKS|B Chain B, Crystal Structure Of Renin-Pf00074777 Complex
pdb|2BKT|A Chain A, Crystal Structure Of Renin-Pf00257567 Complex
pdb|2BKT|B Chain B, Crystal Structure Of Renin-Pf00257567 Complex
pdb|2IKO|A Chain A, Crystal Structure Of Human Renin Complexed With Inhibitor
pdb|2IKO|B Chain B, Crystal Structure Of Human Renin Complexed With Inhibitor
pdb|2IKU|A Chain A, Crystal Structure Of Human Renin Complexed With Inhibitors
pdb|2IKU|B Chain B, Crystal Structure Of Human Renin Complexed With Inhibitors
pdb|2IL2|A Chain A, Crystal Structure Of Human Renin Complexed With Inhibitor
pdb|2IL2|B Chain B, Crystal Structure Of Human Renin Complexed With Inhibitor
pdb|2V0Z|C Chain C, Crystal Structure Of Renin With Inhibitor 10 (Aliskiren)
pdb|2V0Z|O Chain O, Crystal Structure Of Renin With Inhibitor 10 (Aliskiren)
pdb|2V10|C Chain C, Crystal Structure Of Renin With Inhibitor 9
pdb|2V10|O Chain O, Crystal Structure Of Renin With Inhibitor 9
pdb|2V11|C Chain C, Crystal Structure Of Renin With Inhibitor 6
pdb|2V11|O Chain O, Crystal Structure Of Renin With Inhibitor 6
pdb|2V12|C Chain C, Crystal Structure Of Renin With Inhibitor 8
pdb|2V12|O Chain O, Crystal Structure Of Renin With Inhibitor 8
pdb|1BBS|A Chain A, X-Ray Analyses Of Peptide Inhibitor Complexes Define The
Structural Basis Of Specificity For Human And Mouse
Renins
pdb|1BBS|B Chain B, X-Ray Analyses Of Peptide Inhibitor Complexes Define The
Structural Basis Of Specificity For Human And Mouse
Renins
pdb|1RNE|A Chain A, The Crystal Structure Of Recombinant Glycosylated Human
Renin Alone And In Complex With A Transition State
Analog Inhibitor
pdb|2REN|A Chain A, Structure Of Recombinant Human Renin, A Target For
Cardiovascular- Active Drugs, At 2.5 Angstroms
Resolution
pdb|2V13|A Chain A, Crystal Structure Of Renin With Inhibitor 7
pdb|2V16|C Chain C, Crystal Structure Of Renin With Inhibitor 3
pdb|2V16|O Chain O, Crystal Structure Of Renin With Inhibitor 3
pdb|3G72|A Chain A, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3G72|B Chain B, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3OQF|A Chain A, Crystal Structure Analysis Of Renin-Indole-Piperazine
Inhibitor Complexes
pdb|3OQF|B Chain B, Crystal Structure Analysis Of Renin-Indole-Piperazine
Inhibitor Complexes
pdb|3OOT|A Chain A, Crystal Structure Analysis Of Renin-Indole-Piperazin
Inhibitor Complexes
pdb|3OOT|B Chain B, Crystal Structure Analysis Of Renin-Indole-Piperazin
Inhibitor Complexes
pdb|3OQK|A Chain A, Crystal Structure Analysis Of Renin-Indole-Piperazin
Inhibitor Complexes
pdb|3OQK|B Chain B, Crystal Structure Analysis Of Renin-Indole-Piperazin
Inhibitor Complexes
pdb|3Q3T|A Chain A, Alkyl Amine Renin Inhibitors: Filling S1 From S3
pdb|3Q3T|B Chain B, Alkyl Amine Renin Inhibitors: Filling S1 From S3
pdb|3SFC|A Chain A, Structure-Based Optimization Of Potent 4- And
6-Azaindole-3- Carboxamides As Renin Inhibitors
pdb|3SFC|B Chain B, Structure-Based Optimization Of Potent 4- And
6-Azaindole-3- Carboxamides As Renin Inhibitors
pdb|3Q4B|A Chain A, Clinically Useful Alkyl Amine Renin Inhibitors
pdb|3Q4B|B Chain B, Clinically Useful Alkyl Amine Renin Inhibitors
pdb|3Q5H|A Chain A, Clinically Useful Alkyl Amine Renin Inhibitors
pdb|3Q5H|B Chain B, Clinically Useful Alkyl Amine Renin Inhibitors
pdb|3VSW|A Chain A, Human Renin In Complex With Compound 8
pdb|3VSW|B Chain B, Human Renin In Complex With Compound 8
pdb|3VSX|A Chain A, Human Renin In Complex With Compound 18
pdb|3VSX|B Chain B, Human Renin In Complex With Compound 18
pdb|3VYD|A Chain A, Human Renin In Complex With Inhibitor 6
pdb|3VYD|B Chain B, Human Renin In Complex With Inhibitor 6
pdb|3VYE|A Chain A, Human Renin In Complex With Inhibitor 7
pdb|3VYE|B Chain B, Human Renin In Complex With Inhibitor 7
pdb|3VYF|A Chain A, Human Renin In Complex With Inhibitor 9
pdb|3VYF|B Chain B, Human Renin In Complex With Inhibitor 9
pdb|4GJ8|A Chain A, Crystal Structure Of Renin In Complex With Pkf909-724
(compound 3)
pdb|4GJ8|B Chain B, Crystal Structure Of Renin In Complex With Pkf909-724
(compound 3)
pdb|4GJ9|A Chain A, Crystal Structure Of Renin In Complex With Gp055321
(compound 4)
pdb|4GJ9|B Chain B, Crystal Structure Of Renin In Complex With Gp055321
(compound 4)
pdb|4GJA|A Chain A, Crystal Structure Of Renin In Complex With Nvp-ayl747
(compound 5)
pdb|4GJA|B Chain B, Crystal Structure Of Renin In Complex With Nvp-ayl747
(compound 5)
pdb|4GJB|A Chain A, Crystal Structure Of Renin In Complex With Nvp-bbv031
(compound 6)
pdb|4GJB|B Chain B, Crystal Structure Of Renin In Complex With Nvp-bbv031
(compound 6)
pdb|4GJC|A Chain A, Crystal Structure Of Renin In Complex With Nvp-bch965
(compound 9)
pdb|4GJC|B Chain B, Crystal Structure Of Renin In Complex With Nvp-bch965
(compound 9)
pdb|4GJD|A Chain A, Crystal Structure Of Renin In Complex With Nvp-bgq311
(compound 12)
pdb|4GJD|B Chain B, Crystal Structure Of Renin In Complex With Nvp-bgq311
(compound 12)
Length = 340
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 38/88 (43%), Gaps = 9/88 (10%)
Query: 21 NYIVTVGIGTPKRKFSLIFDTGSDLTW---TQCKPCVGFCYQQKEKIFDPKRSKSYRNXX 77
Y +GIGTP + F ++FDTGS W ++C C K+FD S SY++
Sbjct: 19 QYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYH--KLFDASDSSSYKH-- 74
Query: 78 XXXXXXXXLESATGNIPGCASNKTCVYG 105
L +TG + G S G
Sbjct: 75 --NGTELTLRYSTGTVSGFLSQDIITVG 100
>pdb|2VA5|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 8c
pdb|2VA6|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 24
pdb|2VA7|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 27
Length = 455
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 70/178 (39%), Gaps = 16/178 (8%)
Query: 197 SVKFTPLSSAFQGSSFYGLDMTGISVGGEKLPIATTVFSTPGTIIDSGTVITRLPPHAYT 256
S+ +TP+ + +Y + + + + G+ L + ++ +I+DSGT RLP +
Sbjct: 250 SLWYTPIRREW----YYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFE 305
Query: 257 VLKTAFRQLMS--KYPTAPAVSILDTCYDFSEHETITIPKISFFFNGGV-----EVDVDV 309
+ + S K+P + C+ P IS + G V + +
Sbjct: 306 AAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILP 365
Query: 310 TGIMFPIR----ASQVCLAFAGNSDPSDVGIFGNVQQHTLEVVYDVAHGQVGFAAGGC 363
+ P+ + C FA S S + G V VV+D A ++GFA C
Sbjct: 366 QQYLRPVEDVATSQDDCYKFA-ISQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSAC 422
>pdb|3VCM|A Chain A, Crystal Structure Of Human Prorenin
pdb|3VCM|B Chain B, Crystal Structure Of Human Prorenin
Length = 335
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 38/88 (43%), Gaps = 9/88 (10%)
Query: 21 NYIVTVGIGTPKRKFSLIFDTGSDLTW---TQCKPCVGFCYQQKEKIFDPKRSKSYRNXX 77
Y +GIGTP + F ++FDTGS W ++C C K+FD S SY++
Sbjct: 19 QYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYH--KLFDASDSSSYKH-- 74
Query: 78 XXXXXXXXLESATGNIPGCASNKTCVYG 105
L +TG + G S G
Sbjct: 75 --NGTELTLRYSTGTVSGFLSQDIITVG 100
>pdb|2G24|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G24|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G26|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G26|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G27|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G27|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2FS4|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2FS4|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1N|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1N|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1O|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1O|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1R|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1R|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1S|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1S|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1Y|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1Y|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G20|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G20|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G21|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G21|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G22|A Chain A, Ketopiperazine-based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G22|B Chain B, Ketopiperazine-based Renin Inhibitors: Optimization Of The
"c" Ring
Length = 333
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 38/88 (43%), Gaps = 9/88 (10%)
Query: 21 NYIVTVGIGTPKRKFSLIFDTGSDLTW---TQCKPCVGFCYQQKEKIFDPKRSKSYRNXX 77
Y +GIGTP + F ++FDTGS W ++C C K+FD S SY++
Sbjct: 12 QYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYH--KLFDASDSSSYKH-- 67
Query: 78 XXXXXXXXLESATGNIPGCASNKTCVYG 105
L +TG + G S G
Sbjct: 68 --NGTELTLRYSTGTVSGFLSQDIITVG 93
>pdb|1HRN|A Chain A, High Resolution Crystal Structures Of Recombinant Human
Renin In Complex With Polyhydroxymonoamide Inhibitors
pdb|1HRN|B Chain B, High Resolution Crystal Structures Of Recombinant Human
Renin In Complex With Polyhydroxymonoamide Inhibitors
pdb|1BIM|A Chain A, Crystallographic Studies On The Binding Modes Of P2-P3
Butanediamide Renin Inhibitors
pdb|1BIM|B Chain B, Crystallographic Studies On The Binding Modes Of P2-P3
Butanediamide Renin Inhibitors
pdb|1BIL|A Chain A, Crystallographic Studies On The Binding Modes Of P2-P3
Butanediamide Renin Inhibitors
pdb|1BIL|B Chain B, Crystallographic Studies On The Binding Modes Of P2-P3
Butanediamide Renin Inhibitors
pdb|3GW5|A Chain A, Crystal Structure Of Human Renin Complexed With A Novel
Inhibitor
pdb|3GW5|B Chain B, Crystal Structure Of Human Renin Complexed With A Novel
Inhibitor
pdb|3KM4|A Chain A, Optimization Of Orally Bioavailable Alkyl Amine Renin
Inhibitors
pdb|3KM4|B Chain B, Optimization Of Orally Bioavailable Alkyl Amine Renin
Inhibitors
Length = 337
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 38/88 (43%), Gaps = 9/88 (10%)
Query: 21 NYIVTVGIGTPKRKFSLIFDTGSDLTW---TQCKPCVGFCYQQKEKIFDPKRSKSYRNXX 77
Y +GIGTP + F ++FDTGS W ++C C K+FD S SY++
Sbjct: 16 QYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYH--KLFDASDSSSYKH-- 71
Query: 78 XXXXXXXXLESATGNIPGCASNKTCVYG 105
L +TG + G S G
Sbjct: 72 --NGTELTLRYSTGTVSGFLSQDIITVG 97
>pdb|2I4Q|A Chain A, Human ReninPF02342674 COMPLEX
pdb|2I4Q|B Chain B, Human ReninPF02342674 COMPLEX
Length = 336
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 38/88 (43%), Gaps = 9/88 (10%)
Query: 21 NYIVTVGIGTPKRKFSLIFDTGSDLTW---TQCKPCVGFCYQQKEKIFDPKRSKSYRNXX 77
Y +GIGTP + F ++FDTGS W ++C C K+FD S SY++
Sbjct: 15 QYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYH--KLFDASDSSSYKH-- 70
Query: 78 XXXXXXXXLESATGNIPGCASNKTCVYG 105
L +TG + G S G
Sbjct: 71 --NGTELTLRYSTGTVSGFLSQDIITVG 96
>pdb|5PEP|A Chain A, X-Ray Analyses Of Aspartic Proteases. Ii.
Three-Dimensional Structure Of The Hexagonal Crystal
Form Of Porcine Pepsin At 2.3 Angstroms Resolution
Length = 326
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 22 YIVTVGIGTPKRKFSLIFDTGSDLTWTQCKPCVGFCYQQKEKIFDPKRSKSYR 74
Y T+GIGTP + F++IFDTGS W C + F+P S ++
Sbjct: 14 YFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSSLACSDHNQ-FNPDDSSTFE 65
>pdb|1PSA|A Chain A, Structure Of A Pepsin(Slash)renin Inhibitor Complex
Reveals A Novel Crystal Packing Induced By Minor
Chemical Alterations In The Inhibitor
pdb|1PSA|B Chain B, Structure Of A Pepsin(Slash)renin Inhibitor Complex
Reveals A Novel Crystal Packing Induced By Minor
Chemical Alterations In The Inhibitor
pdb|1YX9|A Chain A, Effect Of Dimethyl Sulphoxide On The Crystal Structure
Of Porcine Pepsin
Length = 326
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 22 YIVTVGIGTPKRKFSLIFDTGSDLTWTQCKPCVGFCYQQKEKIFDPKRSKSYR 74
Y T+GIGTP + F++IFDTGS W C + F+P S ++
Sbjct: 14 YFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSSLACSDHNQ-FNPDDSSTFE 65
>pdb|2HIZ|A Chain A, Crystal Structure Of Human Beta-Secretase (Bace) In The
Presence Of An Inhibitor
pdb|2HIZ|B Chain B, Crystal Structure Of Human Beta-Secretase (Bace) In The
Presence Of An Inhibitor
pdb|2HIZ|C Chain C, Crystal Structure Of Human Beta-Secretase (Bace) In The
Presence Of An Inhibitor
pdb|2P83|A Chain A, Potent And Selective Isophthalamide S2 Hydroxyethylamine
Inhibitor Of Bace1
pdb|2P83|B Chain B, Potent And Selective Isophthalamide S2 Hydroxyethylamine
Inhibitor Of Bace1
pdb|2P83|C Chain C, Potent And Selective Isophthalamide S2 Hydroxyethylamine
Inhibitor Of Bace1
Length = 455
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 70/178 (39%), Gaps = 16/178 (8%)
Query: 197 SVKFTPLSSAFQGSSFYGLDMTGISVGGEKLPIATTVFSTPGTIIDSGTVITRLPPHAYT 256
S+ +TP+ + +Y + + + + G+ L + ++ +I+DSGT RLP +
Sbjct: 250 SLWYTPIRREW----YYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFE 305
Query: 257 VLKTAFRQLMS--KYPTAPAVSILDTCYDFSEHETITIPKISFFFNGGV-----EVDVDV 309
+ + S K+P + C+ P IS + G V + +
Sbjct: 306 AAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILP 365
Query: 310 TGIMFPIR----ASQVCLAFAGNSDPSDVGIFGNVQQHTLEVVYDVAHGQVGFAAGGC 363
+ P+ + C FA S S + G V VV+D A ++GFA C
Sbjct: 366 QQYLRPVEDVATSQDDCYKFA-ISQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSAC 422
>pdb|1F34|A Chain A, Crystal Structure Of Ascaris Pepsin Inhibitor-3 Bound To
Porcine Pepsin
Length = 326
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 22 YIVTVGIGTPKRKFSLIFDTGSDLTWTQCKPCVGFCYQQKEKIFDPKRSKSYR 74
Y T+GIGTP + F++IFDTGS W C + F+P S ++
Sbjct: 14 YFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSSLACSDHNQ-FNPDDSSTFE 65
>pdb|3PEP|A Chain A, Revised 2.3 Angstroms Structure Of Porcine Pepsin.
Evidence For A Flexible Subdomain
Length = 326
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 22 YIVTVGIGTPKRKFSLIFDTGSDLTWTQCKPCVGFCYQQKEKIFDPKRSKSYR 74
Y T+GIGTP + F++IFDTGS W C + F+P S ++
Sbjct: 14 YFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSSLACSDHNQ-FNPDDSSTFE 65
>pdb|4PEP|A Chain A, The Molecular And Crystal Structures Of Monoclinic
Porcine Pepsin Refined At 1.8 Angstroms Resolution
Length = 326
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 22 YIVTVGIGTPKRKFSLIFDTGSDLTWTQCKPCVGFCYQQKEKIFDPKRSKSYR 74
Y T+GIGTP + F++IFDTGS W C + F+P S ++
Sbjct: 14 YFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSSLACSDHNQ-FNPDDSSTFE 65
>pdb|3LPI|A Chain A, Structure Of Bace Bound To Sch745132
pdb|3LPI|B Chain B, Structure Of Bace Bound To Sch745132
pdb|3LPJ|A Chain A, Structure Of Bace Bound To Sch743641
pdb|3LPJ|B Chain B, Structure Of Bace Bound To Sch743641
pdb|3LPK|A Chain A, Structure Of Bace Bound To Sch747123
pdb|3LPK|B Chain B, Structure Of Bace Bound To Sch747123
pdb|3OHF|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-655295 Aka N~3~-((1s,2r)-1-
Benzyl-2-Hydroxy-3-((3-
Methoxybenzyl)amino)propyl)-N~1~,
N~1~-Dibutyl-1h-Indole-1,3- Dicarboxamide
pdb|3OHF|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-655295 Aka N~3~-((1s,2r)-1-
Benzyl-2-Hydroxy-3-((3-
Methoxybenzyl)amino)propyl)-N~1~,
N~1~-Dibutyl-1h-Indole-1,3- Dicarboxamide
pdb|3OHH|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-681889 Aka
N~1~-Butyl-5-Cyano- N~3~-((1s,2r)-1-(3,5-
Difluorobenzyl)-2-Hydroxy-3-((3-
Methoxybenzyl)amino)propyl)-N~1~- Methyl-1h-Indole-1,3-
Dicarboxamide
pdb|3OHH|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-681889 Aka
N~1~-Butyl-5-Cyano- N~3~-((1s,2r)-1-(3,5-
Difluorobenzyl)-2-Hydroxy-3-((3-
Methoxybenzyl)amino)propyl)-N~1~- Methyl-1h-Indole-1,3-
Dicarboxamide
pdb|3R2F|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-693391 Aka
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-((1s,2r)-1-(3,
5-Difluorobenzyl)-2-Hydroxy-2-((2r,4r)-
4-Propoxy-2-Pyrrolidinyl)ethyl)-4-Phenylbutanamide
pdb|3R2F|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-693391 Aka
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-((1s,2r)-1-(3,
5-Difluorobenzyl)-2-Hydroxy-2-((2r,4r)-
4-Propoxy-2-Pyrrolidinyl)ethyl)-4-Phenylbutanamide
pdb|3R2F|D Chain D, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-693391 Aka
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-((1s,2r)-1-(3,
5-Difluorobenzyl)-2-Hydroxy-2-((2r,4r)-
4-Propoxy-2-Pyrrolidinyl)ethyl)-4-Phenylbutanamide
pdb|3R2F|E Chain E, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-693391 Aka
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-((1s,2r)-1-(3,
5-Difluorobenzyl)-2-Hydroxy-2-((2r,4r)-
4-Propoxy-2-Pyrrolidinyl)ethyl)-4-Phenylbutanamide
pdb|3SKF|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3s)-3-(Acetylamino)-3-(Butan-2-Yl)-2-
Oxopyrrolidin-1-
Yl)-N-((2s,
3r)-3-Hydroxy-4-((3-Methoxybenzyl)amino)-1-Phenylbutan-
2- Yl)-4-Phenylbutanamide
pdb|3SKF|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3s)-3-(Acetylamino)-3-(Butan-2-Yl)-2-
Oxopyrrolidin-1-
Yl)-N-((2s,
3r)-3-Hydroxy-4-((3-Methoxybenzyl)amino)-1-Phenylbutan-
2- Yl)-4-Phenylbutanamide
pdb|3SKG|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-
((1s,2r)-1-(3,5-Difluorobenzyl)-2-Hydroxy-2-(1,2,3,
4-Tetrahydro-3- Isoquinolinyl)ethyl)-4-Phenylbutanamide
pdb|3SKG|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-
((1s,2r)-1-(3,5-Difluorobenzyl)-2-Hydroxy-2-(1,2,3,
4-Tetrahydro-3- Isoquinolinyl)ethyl)-4-Phenylbutanamide
pdb|3SKG|D Chain D, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-
((1s,2r)-1-(3,5-Difluorobenzyl)-2-Hydroxy-2-(1,2,3,
4-Tetrahydro-3- Isoquinolinyl)ethyl)-4-Phenylbutanamide
pdb|3SKG|E Chain E, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-
((1s,2r)-1-(3,5-Difluorobenzyl)-2-Hydroxy-2-(1,2,3,
4-Tetrahydro-3- Isoquinolinyl)ethyl)-4-Phenylbutanamide
pdb|4FSE|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With N-(N-(4-Amino-3,5-
Dichlorobenzyl)carbamimidoyl)-3-(4- Methoxyphenyl)-5-
Methyl-4-Isothiazolecarboxamide
pdb|4FSE|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With N-(N-(4-Amino-3,5-
Dichlorobenzyl)carbamimidoyl)-3-(4- Methoxyphenyl)-5-
Methyl-4-Isothiazolecarboxamide
pdb|4FSE|D Chain D, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With N-(N-(4-Amino-3,5-
Dichlorobenzyl)carbamimidoyl)-3-(4- Methoxyphenyl)-5-
Methyl-4-Isothiazolecarboxamide
pdb|4FSE|E Chain E, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With N-(N-(4-Amino-3,5-
Dichlorobenzyl)carbamimidoyl)-3-(4- Methoxyphenyl)-5-
Methyl-4-Isothiazolecarboxamide
Length = 455
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 70/178 (39%), Gaps = 16/178 (8%)
Query: 197 SVKFTPLSSAFQGSSFYGLDMTGISVGGEKLPIATTVFSTPGTIIDSGTVITRLPPHAYT 256
S+ +TP+ + +Y + + + + G+ L + ++ +I+DSGT RLP +
Sbjct: 249 SLWYTPIRREW----YYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFE 304
Query: 257 VLKTAFRQLMS--KYPTAPAVSILDTCYDFSEHETITIPKISFFFNGGV-----EVDVDV 309
+ + S K+P + C+ P IS + G V + +
Sbjct: 305 AAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILP 364
Query: 310 TGIMFPIR----ASQVCLAFAGNSDPSDVGIFGNVQQHTLEVVYDVAHGQVGFAAGGC 363
+ P+ + C FA S S + G V VV+D A ++GFA C
Sbjct: 365 QQYLRPVEDVATSQDDCYKFA-ISQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSAC 421
>pdb|2X0B|A Chain A, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
pdb|2X0B|C Chain C, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
pdb|2X0B|E Chain E, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
pdb|2X0B|G Chain G, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
Length = 383
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 38/88 (43%), Gaps = 9/88 (10%)
Query: 21 NYIVTVGIGTPKRKFSLIFDTGSDLTW---TQCKPCVGFCYQQKEKIFDPKRSKSYRNXX 77
Y +GIGTP + F ++FDTGS W ++C C K+FD S SY++
Sbjct: 62 QYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYH--KLFDASDSSSYKH-- 117
Query: 78 XXXXXXXXLESATGNIPGCASNKTCVYG 105
L +TG + G S G
Sbjct: 118 --NGTELTLRYSTGTVSGFLSQDIITVG 143
>pdb|2ZJI|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With
N-[1-(2,
6-Dimethoxy-Benzyl)-Piperidin-4-Yl]-4-Mercapto-
Butyramide
Length = 405
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 70/178 (39%), Gaps = 16/178 (8%)
Query: 197 SVKFTPLSSAFQGSSFYGLDMTGISVGGEKLPIATTVFSTPGTIIDSGTVITRLPPHAYT 256
S+ +TP+ + +Y + + + + G+ L + ++ +I+DSGT RLP +
Sbjct: 207 SLWYTPIRREW----YYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFE 262
Query: 257 VLKTAFRQLMS--KYPTAPAVSILDTCYDFSEHETITIPKISFFFNGGV-----EVDVDV 309
+ + S K+P + C+ P IS + G V + +
Sbjct: 263 AAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILP 322
Query: 310 TGIMFPIR----ASQVCLAFAGNSDPSDVGIFGNVQQHTLEVVYDVAHGQVGFAAGGC 363
+ P+ + C FA S S + G V VV+D A ++GFA C
Sbjct: 323 QQYLRPVEDVATSQDDCYKFA-ISQSSCGTVMGAVIMEGFYVVFDRARKRIGFAVSAC 379
>pdb|3PSG|A Chain A, The High Resolution Crystal Structure Of Porcine
Pepsinogen
Length = 370
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 21 NYIVTVGIGTPKRKFSLIFDTGSDLTWTQCKPCVGFCYQQKEKIFDPKRSKSYR 74
Y T+GIGTP + F++IFDTGS W C + F+P S ++
Sbjct: 57 EYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSSLACSDHNQ-FNPDDSSTFE 109
>pdb|2PSG|A Chain A, Refined Structure Of Porcine Pepsinogen At 1.8 Angstroms
Resolution
Length = 370
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 21 NYIVTVGIGTPKRKFSLIFDTGSDLTWTQCKPCVGFCYQQKEKIFDPKRSKSYR 74
Y T+GIGTP + F++IFDTGS W C + F+P S ++
Sbjct: 57 EYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSSLACSDHNQ-FNPDDSSTFE 109
>pdb|2ZJH|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With
N-(1-Benzyl-Piperidin-4-Yl)-4-Mercapto-Butyramide
pdb|2ZJL|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With
N-[1-(5-Bromo-2,3-Dimethoxy-Benzyl)-Piperidin-
4-Yl]-4-Mercapto-Butyramide
Length = 405
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 69/178 (38%), Gaps = 16/178 (8%)
Query: 197 SVKFTPLSSAFQGSSFYGLDMTGISVGGEKLPIATTVFSTPGTIIDSGTVITRLPPHAYT 256
S+ +TP+ + +Y + + + + G+ L + ++ +I+DSGT RLP +
Sbjct: 207 SLWYTPIRREW----YYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFE 262
Query: 257 VLKTAFRQLMS--KYPTAPAVSILDTCYDFSEHETITIPKISFFFNGGV-----EVDVDV 309
+ + S K+P + C+ P IS + G V + +
Sbjct: 263 AAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILP 322
Query: 310 TGIMFPIR----ASQVCLAFAGNSDPSDVGIFGNVQQHTLEVVYDVAHGQVGFAAGGC 363
+ P+ + C FA S S G V VV+D A ++GFA C
Sbjct: 323 QQYLRPVEDVATSQDDCYKFA-ISQSSTGTCMGAVIMEGFYVVFDRARKRIGFAVSAC 379
>pdb|2ZJJ|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With 4-(4-Fluoro-Benzyl)-Piperazine-2-Carboxylic
Acid (2-Mercapto-Ethyl)- Amide
Length = 405
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 38/178 (21%), Positives = 69/178 (38%), Gaps = 16/178 (8%)
Query: 197 SVKFTPLSSAFQGSSFYGLDMTGISVGGEKLPIATTVFSTPGTIIDSGTVITRLPPHAYT 256
S+ +TP+ + +Y + + + + G+ L + ++ +I+DSG RLP +
Sbjct: 207 SLWYTPIRREW----YYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGCTNLRLPKKVFE 262
Query: 257 VLKTAFRQLMS--KYPTAPAVSILDTCYDFSEHETITIPKISFFFNGGV-----EVDVDV 309
+ + S K+P + C+ P IS + G V + +
Sbjct: 263 AAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILP 322
Query: 310 TGIMFPIR----ASQVCLAFAGNSDPSDVGIFGNVQQHTLEVVYDVAHGQVGFAAGGC 363
+ P+ + C FA S S + G V VV+D A ++GFA C
Sbjct: 323 QQYLRPVEDVATSQDDCYKFA-ISQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSAC 379
>pdb|3CMS|A Chain A, Engineering Enzyme Sub-Site Specificity: Preparation,
Kinetic Characterization And X-Ray Analysis At
2.0-Angstroms Resolution Of Val111phe Site-Mutated Calf
Chymosin
Length = 323
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 21 NYIVTVGIGTPKRKFSLIFDTGSDLTWTQCKPCVGFCYQQKEKIFDPKRSKSYRN 75
Y + +GTP ++F+++FDTGS W C + ++ FDP++S +++N
Sbjct: 15 QYFGKIYLGTPPQEFTVLFDTGSSDFWVPSIYCKSNACKNHQR-FDPRKSSTFQN 68
>pdb|1CZI|E Chain E, Chymosin Complex With The Inhibitor Cp-113972
pdb|1CMS|A Chain A, The Three-Dimensional Structure Of Recombinant Bovine
Chymosin At 2.3 Angstroms Resolution
pdb|4CMS|A Chain A, X-Ray Analyses Of Aspartic Proteinases Iv. Structure And
Refinement At 2.2 Angstroms Resolution Of Bovine
Chymosin
pdb|4AA8|A Chain A, Bovine Chymosin At 1.8a Resolution
Length = 323
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 21 NYIVTVGIGTPKRKFSLIFDTGSDLTWTQCKPCVGFCYQQKEKIFDPKRSKSYRN 75
Y + +GTP ++F+++FDTGS W C + ++ FDP++S +++N
Sbjct: 15 QYFGKIYLGTPPQEFTVLFDTGSSDFWVPSIYCKSNACKNHQR-FDPRKSSTFQN 68
>pdb|2QZW|A Chain A, Secreted Aspartic Proteinase (Sap) 1 From Candida Albicans
pdb|2QZW|B Chain B, Secreted Aspartic Proteinase (Sap) 1 From Candida Albicans
Length = 341
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 85/371 (22%), Positives = 135/371 (36%), Gaps = 90/371 (24%)
Query: 22 YIVTVGIGTPKRKFSLIFDTGSDLTW------TQCKPCVG----FCYQQKEKIFDPKRSK 71
Y + IG+ K+KF++I DTGS W T KP G FC + + I+ PK S
Sbjct: 14 YAADITIGSNKQKFNVIVDTGSSDLWVPDASVTCDKPRPGQSADFC--KGKGIYTPKSST 71
Query: 72 SYRNXXXXXXXXXXLESATGNIPGCASNKTCVYGIQYGDSSFSVGFFAKETLTL----TS 127
+ +N T Y I YGD S S G K+T+ +
Sbjct: 72 TSQNLG-----------------------TPFY-IGYGDGSSSQGTLYKDTVGFGGASIT 107
Query: 128 KDVF--------PKFLLGCGQNNXXXXXXXXXXXXXXXNKISLVYQTASKYKKRFSYCLP 179
K VF P+ +LG G N+ + K +S L
Sbjct: 108 KQVFADITKTSIPQGILGIGYKTNEAAGDYDNVPVTLKNQGVIA-------KNAYSLYLN 160
Query: 180 SSSSSTGHLTFGPGIKKSVKFTPLSSAFQGSSFYGLDMTGISVGGEKLPIATTVFSTPGT 239
S +++TG + FG G+ K+ K++ A +S L +T S+ + +
Sbjct: 161 SPNAATGQIIFG-GVDKA-KYSGSLIAVPVTSDRELRITLNSLKA----VGKNINGNIDV 214
Query: 240 IIDSGTVITRLPPHAYTVLKTAFRQLMSKYPTAPAVSILD------TCYDFSEHETITIP 293
++DSGT IT L + AF+ + + D ++F + I++P
Sbjct: 215 LLDSGTTITYLQQDVAQDIIDAFQAELKSDGQGHTFYVTDCQTSGTVDFNFDNNAKISVP 274
Query: 294 KISF-----FFNGGVEVDVDVTGIMFPIRASQVCLAFAGNSDPSDVGIFGNVQQHTLEVV 348
F + NG P Q+ L SD I G+ + +V
Sbjct: 275 ASEFTAPLSYANGQ------------PYPKCQLLLGI------SDANILGDNFLRSAYLV 316
Query: 349 YDVAHGQVGFA 359
YD+ ++ A
Sbjct: 317 YDLDDDKISLA 327
>pdb|1AM5|A Chain A, The Crystal Structure And Proposed Amino Acid Sequence
Of A Pepsin From Atlantic Cod (Gadus Morhua)
Length = 324
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Query: 22 YIVTVGIGTPKRKFSLIFDTGSDLTWTQCKPCVGFCYQQKEKIFDPKRSKSY 73
Y + IGTP F +IFDTGS W C K F P++S +Y
Sbjct: 14 YYGVISIGTPPESFKVIFDTGSSNLWVSSSHCSAQACSNHNK-FKPRQSSTY 64
>pdb|1J71|A Chain A, Structure Of The Extracellular Aspartic Proteinase From
Candida Tropicalis Yeast
Length = 334
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 84/363 (23%), Positives = 140/363 (38%), Gaps = 80/363 (22%)
Query: 22 YIVTVGIGTPKRKFSLIFDTGSDLTWT-----QCK-----PCVGFCYQQKEKIFDPKRSK 71
Y + +G+ ++K +++ DTGS W +C+ FC Q E FDP S
Sbjct: 14 YAADIVVGSNQQKQTVVIDTGSSDLWVVDTDAECQVTYSGQTNNFCKQ--EGTFDPSSSS 71
Query: 72 SYRNXXXXXXXXXXLESATGNIPGCASNKTCVYGIQYGDSSFSVGFFAKET--------- 122
S A N + I+YGD + S G F K+T
Sbjct: 72 S------------------------AQNLNQDFSIEYGDLTSSQGSFYKDTVGFGGISIK 107
Query: 123 ------LTLTSKDVFPKFLLGCGQNNXXXXXXXXXXXXXXXNKISLVYQTASKYKKRFSY 176
+T TS D + ++G G K ++ + A +S
Sbjct: 108 NQQFADVTTTSVD---QGIMGIGFTADEAGYNLYDNVPVTLKKQGIINKNA------YSL 158
Query: 177 CLPSSSSSTGHLTFGPGIKKSVKFTPLSSAFQGSSFYGLDMTGISVGGEKLPIATTVFST 236
L S +STG + FG G+ + K+T +A +S L + S+ + T+V +
Sbjct: 159 YLNSEDASTGKIIFG-GVDNA-KYTGTLTALPVTSSVELRVHLGSINFD----GTSVSTN 212
Query: 237 PGTIIDSGTVITRLPPHAYTVLKTAFRQLMSKYPTAPAVSILDTCYDFSEHETITIPKIS 296
++DSGT IT T K A R + + + + + L +C D S
Sbjct: 213 ADVVLDSGTTITYFSQS--TADKFA-RIVGATWDSRNEIYRLPSC-DLSGDAV------- 261
Query: 297 FFFNGGVEVDVDVTGIMFPIRASQVCLAFAGNSDPSDVGIFGNVQQHTLEVVYDVAHGQV 356
F F+ GV++ V ++ ++ S +C + G S +D I G+ +VYD+ +
Sbjct: 262 FNFDQGVKITVPLSELILKDSDSSIC--YFGIS-RNDANILGDNFLRRAYIVYDLDDKTI 318
Query: 357 GFA 359
A
Sbjct: 319 SLA 321
>pdb|1QDM|A Chain A, Crystal Structure Of Prophytepsin, A Zymogen Of A Barley
Vacuolar Aspartic Proteinase.
pdb|1QDM|B Chain B, Crystal Structure Of Prophytepsin, A Zymogen Of A Barley
Vacuolar Aspartic Proteinase.
pdb|1QDM|C Chain C, Crystal Structure Of Prophytepsin, A Zymogen Of A Barley
Vacuolar Aspartic Proteinase
Length = 478
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 5/46 (10%)
Query: 13 HGSVVGSGNYIVT-----VGIGTPKRKFSLIFDTGSDLTWTQCKPC 53
G +V NY+ +G+GTP +KF++IFDTGS W C
Sbjct: 40 EGDIVALKNYMNAQYFGEIGVGTPPQKFTVIFDTGSSNLWVPSAKC 85
>pdb|1WKR|A Chain A, Crystal Structure Of Aspartic Proteinase From Irpex
Lacteus
Length = 340
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 27/42 (64%), Gaps = 4/42 (9%)
Query: 6 AATLPAIHGSVVGSGNYIVTVGIGTPKRKFSLIFDTGSDLTW 47
A ++PA + V +Y+V VG+G+P +SL+ DTGS TW
Sbjct: 2 AGSVPATNQLV----DYVVNVGVGSPATTYSLLVDTGSSNTW 39
Score = 35.8 bits (81), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 46/86 (53%), Gaps = 10/86 (11%)
Query: 180 SSSSSTGHLTFGPGIKK----SVKFTPLSSAFQGSSFYGLDMTGISVGGEKLPIATTVFS 235
S SS+ G LTFG S+ +TP++S S+++G++ + I G +T++ S
Sbjct: 152 SESSTNGELTFGATDSSKYTGSITYTPITSTSPASAYWGINQS-IRYGS-----STSILS 205
Query: 236 TPGTIIDSGTVITRLPPHAYTVLKTA 261
+ I+D+GT +T + A+ K A
Sbjct: 206 STAGIVDTGTTLTLIASDAFAKYKKA 231
>pdb|1TZS|A Chain A, Crystal Structure Of An Activation Intermediate Of
Cathepsin E
Length = 351
Score = 36.6 bits (83), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 21 NYIVTVGIGTPKRKFSLIFDTGSDLTWTQCKPCVGFCYQQKEKIFDPKRSKSY 73
Y T+ IG+P + F++IFDTGS W C + + F P +S +Y
Sbjct: 24 EYFGTISIGSPPQNFTVIFDTGSSNLWVPSVYCTSPACKTHSR-FQPSQSSTY 75
>pdb|2ANL|A Chain A, X-Ray Crystal Structure Of The Aspartic Protease
Plasmepsin 4 From The Malarial Parasite Plasmodium
Malariae Bound To An Allophenylnorstatine Based
Inhibitor
pdb|2ANL|B Chain B, X-Ray Crystal Structure Of The Aspartic Protease
Plasmepsin 4 From The Malarial Parasite Plasmodium
Malariae Bound To An Allophenylnorstatine Based
Inhibitor
Length = 327
Score = 35.4 bits (80), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 28 IGTPKRKFSLIFDTGSDLTWTQCKPCVGFCYQQKEKIFDPKRSKSYR 74
+G +KF LIFDTGS W K C K ++D +SKSY
Sbjct: 22 VGDNHQKFMLIFDTGSANLWVPSKKCNSIGCSTKH-LYDSSKSKSYE 67
>pdb|3QRV|A Chain A, Crystal Structure Of Plasmepsin I (Pmi) From Plasmodium
Falciparum
pdb|3QRV|B Chain B, Crystal Structure Of Plasmepsin I (Pmi) From Plasmodium
Falciparum
pdb|3QS1|A Chain A, Crystal Structure Of Kni-10006 Complex Of Plasmepsin I
(Pmi) From Plasmodium Falciparum
pdb|3QS1|B Chain B, Crystal Structure Of Kni-10006 Complex Of Plasmepsin I
(Pmi) From Plasmodium Falciparum
pdb|3QS1|C Chain C, Crystal Structure Of Kni-10006 Complex Of Plasmepsin I
(Pmi) From Plasmodium Falciparum
pdb|3QS1|D Chain D, Crystal Structure Of Kni-10006 Complex Of Plasmepsin I
(Pmi) From Plasmodium Falciparum
Length = 336
Score = 34.7 bits (78), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 28 IGTPKRKFSLIFDTGSDLTWTQCKPCVGFCYQQKEKIFDPKRSKSYR 74
IG K+KF+ IFDTGS W C + K ++D +SK+Y
Sbjct: 29 IGDNKQKFAFIFDTGSANLWVPSAQCNTIGCKTK-NLYDSNKSKTYE 74
>pdb|1SMR|A Chain A, The 3-D Structure Of Mouse Submaxillary Renin Complexed
With A Decapeptide Inhibitor Ch-66 Based On The 4-16
Fragment Of Rat Angiotensinogen
pdb|1SMR|C Chain C, The 3-D Structure Of Mouse Submaxillary Renin Complexed
With A Decapeptide Inhibitor Ch-66 Based On The 4-16
Fragment Of Rat Angiotensinogen
pdb|1SMR|E Chain E, The 3-D Structure Of Mouse Submaxillary Renin Complexed
With A Decapeptide Inhibitor Ch-66 Based On The 4-16
Fragment Of Rat Angiotensinogen
pdb|1SMR|G Chain G, The 3-D Structure Of Mouse Submaxillary Renin Complexed
With A Decapeptide Inhibitor Ch-66 Based On The 4-16
Fragment Of Rat Angiotensinogen
Length = 335
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 18/33 (54%)
Query: 21 NYIVTVGIGTPKRKFSLIFDTGSDLTWTQCKPC 53
Y +GIGTP + F +IFDTGS W C
Sbjct: 16 QYYGEIGIGTPPQTFKVIFDTGSANLWVPSTKC 48
>pdb|1QS8|A Chain A, Crystal Structure Of The P. Vivax Aspartic Proteinase
Plasmepsin Complexed With The Inhibitor Pepstatin A
pdb|1QS8|B Chain B, Crystal Structure Of The P. Vivax Aspartic Proteinase
Plasmepsin Complexed With The Inhibitor Pepstatin A
Length = 329
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 28 IGTPKRKFSLIFDTGSDLTWTQCKPCVGFCYQQKEKIFDPKRSKSYR 74
+G +KF LIFDTGS W K C K ++D +SKSY
Sbjct: 24 VGDNHQKFMLIFDTGSANLWVPSKKCNSSGCSIK-NLYDSSKSKSYE 69
>pdb|1MIQ|A Chain A, Crystal Structure Of Proplasmepsin From The Human Malarial
Pathogen Plasmodium Vivax
pdb|1MIQ|B Chain B, Crystal Structure Of Proplasmepsin From The Human Malarial
Pathogen Plasmodium Vivax
Length = 375
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 28 IGTPKRKFSLIFDTGSDLTWTQCKPCVGFCYQQKEKIFDPKRSKSYR 74
+G +KF LIFDTGS W K C K ++D +SKSY
Sbjct: 70 VGDNHQKFMLIFDTGSANLWVPSKKCNSSGCSIK-NLYDSSKSKSYE 115
>pdb|1LS5|A Chain A, Crystal Structure Of Plasmepsin Iv From P. Falciparum In
Complex With Pepstatin A
pdb|1LS5|B Chain B, Crystal Structure Of Plasmepsin Iv From P. Falciparum In
Complex With Pepstatin A
Length = 328
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 59/256 (23%), Positives = 85/256 (33%), Gaps = 44/256 (17%)
Query: 28 IGTPKRKFSLIFDTGSDLTWTQCKPCVGFCYQQKEKIFDPKRSKSYRNXXXXXXXXXXLE 87
IGT K+ F IFDTGS W C K ++D SKSY +
Sbjct: 22 IGTNKQPFMFIFDTGSANLWVPSVNCDSIGCSTKH-LYDASASKSYEK----DGTKVEIS 76
Query: 88 SATGNIPGCASNKTCVYGIQYGDSSFSVGFFAKETLTLTSKDVFPKF-------LLGCGQ 140
+G + G S I GD S F + D+ P + +LG G
Sbjct: 77 YGSGTVRGYFSKDV----ISLGDLSLPYKFIE----VTDADDLEPIYSGSEFDGILGLGW 128
Query: 141 NNXXX-XXXXXXXXXXXXNKISLVYQTASKYKKRFSYCLPSSSSSTGHLTFGPGIKKSVK 199
+ NKI F++ LP G+LT G GI+
Sbjct: 129 KDLSIGSIDPVVVELKKQNKID---------NALFTFYLPVHDKHVGYLTIG-GIESDFY 178
Query: 200 FTPLS-SAFQGSSFYGLDMTGISVGGEKLPIATTVFSTPGTIIDSGTVITRLPPHAYTVL 258
PL+ ++ +D+ + V ++DSGT P + L
Sbjct: 179 EGPLTYEKLNHDLYWQIDL--------DIHFGKYVMQKANAVVDSGTSTITAPT---SFL 227
Query: 259 KTAFRQL-MSKYPTAP 273
FR + + K P P
Sbjct: 228 NKFFRDMNVIKVPFLP 243
>pdb|1LYW|A Chain A, Cathepsin D At Ph 7.5
pdb|1LYW|C Chain C, Cathepsin D At Ph 7.5
pdb|1LYW|E Chain E, Cathepsin D At Ph 7.5
pdb|1LYW|G Chain G, Cathepsin D At Ph 7.5
pdb|1LYA|A Chain A, Crystal Structures Of Native And Inhibited Forms Of
Human Cathepsin D: Implications For Lysosomal Targeting
And Drug Design
pdb|1LYA|C Chain C, Crystal Structures Of Native And Inhibited Forms Of
Human Cathepsin D: Implications For Lysosomal Targeting
And Drug Design
pdb|1LYB|A Chain A, Crystal Structures Of Native And Inhibited Forms Of
Human Cathepsin D: Implications For Lysosomal Targeting
And Drug Design
pdb|1LYB|C Chain C, Crystal Structures Of Native And Inhibited Forms Of
Human Cathepsin D: Implications For Lysosomal Targeting
And Drug Design
Length = 97
Score = 32.7 bits (73), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 5/57 (8%)
Query: 20 GNYIVTVGIGTPKRKFSLIFDTGSDLTWT---QCKPCVGFCYQQKEKIFDPKRSKSY 73
Y +GIGTP + F+++FDTGS W CK C+ + ++ +S +Y
Sbjct: 13 AQYYGEIGIGTPPQCFTVVFDTGSSNLWVPSIHCKLLDIACWIHHK--YNSDKSSTY 67
>pdb|1GKT|A Chain A, Neutron Laue Diffraction Structure Of Endothiapepsin
Complexed With Transition State Analogue Inhibitor H261
Length = 329
Score = 32.3 bits (72), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Query: 22 YIVTVGIGTPKRKFSLIFDTGSDLTWTQCKPCVGFCYQQKEKIFDPKRSKSYR 74
YI V IGTP + +L FDTGS W + + I+ P +S + +
Sbjct: 17 YITPVQIGTPAQTLNLDFDTGSSDLWVFSSETT--ASEVXQTIYTPSKSTTAK 67
>pdb|1GVT|A Chain A, Endothiapepsin Complex With Cp-80,794
pdb|1GVU|A Chain A, Endothiapepsin Complex With H189
pdb|1GVV|A Chain A, Five Atomic Resolution Structures Of Endothiapepsin
Inhibitor Complexes; Implications For The Aspartic
Proteinase Mechanism
pdb|1GVW|A Chain A, Endothiapepsin Complex With Pd-130,328
pdb|1GVX|A Chain A, Endothiapepsin Complexed With H256
pdb|1OEX|A Chain A, Atomic Resolution Structure Of Endothiapepsin In Complex
With A Hydroxyethylene Transition State Analogue
Inhibitor H261
pdb|2JJI|A Chain A, Endothiapepsin In Complex With A Gem-Diol Inhibitor.
pdb|2JJJ|A Chain A, Endothiapepsin In Complex With A Gem-Diol Inhibitor.
pdb|2VS2|A Chain A, Neutron Diffraction Structure Of Endothiapepsin In
Complex With A Gem- Diol Inhibitor.
pdb|3URJ|A Chain A, Type Iv Native Endothiapepsin
pdb|3URI|A Chain A, Endothiapepsin-Db5 Complex.
pdb|3URL|A Chain A, Endothiapepsin-Db6 Complex.
pdb|1OEW|A Chain A, Atomic Resolution Structure Of Native Endothiapepsin
Length = 329
Score = 32.3 bits (72), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Query: 22 YIVTVGIGTPKRKFSLIFDTGSDLTWTQCKPCVGFCYQQKEKIFDPKRSKSYR 74
YI V IGTP + +L FDTGS W + + I+ P +S + +
Sbjct: 17 YITPVQIGTPAQTLNLDFDTGSSDLWVFSSETT--ASEVXQTIYTPSKSTTAK 67
>pdb|3C9X|A Chain A, Crystal Structure Of Trichoderma Reesei Aspartic
Proteinase
pdb|3EMY|A Chain A, Crystal Structure Of Trichoderma Reesei Aspartic
Proteinase Complexed With Pepstatin A
Length = 329
Score = 32.0 bits (71), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 18/35 (51%)
Query: 13 HGSVVGSGNYIVTVGIGTPKRKFSLIFDTGSDLTW 47
H S YI +V IGTP + L FDTGS W
Sbjct: 8 HPSDSADSEYITSVSIGTPAQVLPLDFDTGSSDLW 42
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 69/172 (40%), Gaps = 31/172 (18%)
Query: 195 KKSVKFTPLSSAFQGSSFYGLDMTGISVGGEKLPIATTVFSTPGTIIDSGTVITRLPPHA 254
K V +TP+ ++ QG F+ +G SVGG KL S G I D+GT + L +
Sbjct: 180 KGPVAYTPVDNS-QG--FWEFTASGYSVGGGKL----NRNSIDG-IADTGTTLLLLDDN- 230
Query: 255 YTVLKTAFRQLMS-KYPTAPAVSILDTCYDFSE------HETITIPKISFFFNGGVEVDV 307
V+ + + S +Y + D D TITIP
Sbjct: 231 --VVDAYYANVQSAQYDNQQEGVVFDCDEDLPSFSFGVGSSTITIPG------------- 275
Query: 308 DVTGIMFPIRASQVCLAFAGNSDPSDVGIFGNVQQHTLEVVYDVAHGQVGFA 359
D+ + S C +S + IFG+V VV+D+ + ++G+A
Sbjct: 276 DLLNLTPLEEGSSTCFGGLQSSSGIGINIFGDVALKAALVVFDLGNERLGWA 327
>pdb|1ZAP|A Chain A, Secreted Aspartic Protease From C. Albicans
Length = 342
Score = 32.0 bits (71), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 65/304 (21%), Positives = 107/304 (35%), Gaps = 66/304 (21%)
Query: 22 YIVTVGIGTPKRKFSLIFDTGSDLTW----------TQCKPCVGFCYQQKEKIFDPKRSK 71
Y + +G+ +K ++I DTGS W T FC Q+ +DP S
Sbjct: 14 YAADITVGSNNQKLNVIVDTGSSDLWVPDVNIDCQVTYSDQTADFCKQKG--TYDPSGSS 71
Query: 72 SYRNXXXXXXXXXXLESATGNIPGCASNKTCVYGIQYGDSSFSVGFFAKET--------- 122
+ ++ N P + I YGD S S G K+T
Sbjct: 72 ASQDL---------------NTP---------FSIGYGDGSSSQGTLYKDTVGFGGVSIK 107
Query: 123 ---LTLTSKDVFPKFLLGCGQNNXXXXXXXXXXXXXXXNKISLVYQTASKYKKRFSYCLP 179
L + +LG G N + + K +S L
Sbjct: 108 NQVLADVDSTSIDQGILGVG-------YKTNEAGGSYDNVPVTLKKQGVIAKNAYSLYLN 160
Query: 180 SSSSSTGHLTFGPGIKKSVKFTPLSSAFQGSSFYGLDMTGISVGGEKLPIATTVFSTPGT 239
S S+TG + FG G+ + K++ A +S L IS+G ++ T
Sbjct: 161 SPDSATGQIIFG-GVDNA-KYSGSLIALPVTSDREL---RISLGSVEVSGKTINTDNVDV 215
Query: 240 IIDSGTVITRLPPHAYTVLKTAFRQLMSKYPTAPAVSIL------DTCYDFSEHETITIP 293
++DSGT IT L + AF +++ + + D ++FS++ I++P
Sbjct: 216 LLDSGTTITYLQQDLADQIIKAFNGKLTQDSNGNSFYEVDCNLSGDVVFNFSKNAKISVP 275
Query: 294 KISF 297
F
Sbjct: 276 ASDF 279
>pdb|1EPR|E Chain E, Endothia Aspartic Proteinase (Endothiapepsin) Complexed
With Pd-135, 040
Length = 330
Score = 31.2 bits (69), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 22 YIVTVGIGTPKRKFSLIFDTGSDLTWTQCKPCVGFCYQQKEKIFDPKRSKSYR 74
YI V IGTP + +L FDTGS W + I+ P +S + +
Sbjct: 17 YITPVQIGTPAQTLNLDFDTGSSDLWVFSSETTA-SEVDGQTIYTPSKSTTAK 68
>pdb|1ER8|E Chain E, The Active Site Of Aspartic Proteinases
pdb|2ER0|E Chain E, X-Ray Studies Of Aspartic Proteinase-Statine Inhibitor
Complexes
pdb|2ER6|E Chain E, The Structure Of A Synthetic Pepsin Inhibitor Complexed
With Endothiapepsin.
pdb|2ER7|E Chain E, X-Ray Analyses Of Aspartic Proteinases.Iii.
Three-Dimensional Structure Of Endothiapepsin Complexed
With A Transition-State Isostere Inhibitor Of Renin At
1.6 Angstroms Resolution
pdb|2ER9|E Chain E, X-Ray Studies Of Aspartic Proteinase-Statine Inhibitor
Complexes.
pdb|3ER3|E Chain E, The Active Site Of Aspartic Proteinases
pdb|3ER5|E Chain E, The Active Site Of Aspartic Proteinases
pdb|4ER1|E Chain E, The Active Site Of Aspartic Proteinases
pdb|4ER2|E Chain E, The Active Site Of Aspartic Proteinases
pdb|4ER4|E Chain E, High-Resolution X-Ray Analyses Of Renin
Inhibitor-Aspartic Proteinase Complexes
pdb|5ER1|E Chain E, A Rational Approach To The Design Of Antihypertensives.
X-Ray Studies Of Complexes Between Aspartic Proteinases
And Aminoalcohol Renin Inhibitors
pdb|5ER2|E Chain E, High-Resolution X-Ray Diffraction Study Of The Complex
Between Endothiapepsin And An Oligopeptide Inhibitor.
The Analysis Of The Inhibitor Binding And Description
Of The Rigid Body Shift In The Enzyme
pdb|1EED|P Chain P, X-Ray Crystallographic Analysis Of Inhibition Of
Endothiapepsin By Cyclohexyl Renin Inhibitors
pdb|1ENT|E Chain E, X-Ray Analyses Of Aspartic Proteinases. The
Three-Dimensional Structure At 2.1 Angstroms Resolution
Of Endothiapepsin
pdb|1EPL|E Chain E, A Structural Comparison Of 21 Inhibitor Complexes Of The
Aspartic Proteinase From Endothia Parasitica
pdb|1EPM|E Chain E, A Structural Comparison Of 21 Inhibitor Complexes Of The
Aspartic Proteinase From Endothia Parasitica
pdb|1EPN|E Chain E, A Structural Comparison Of 21 Inhibitor Complexes Of The
Aspartic Proteinase From Endothia Parasitica
pdb|1EPO|E Chain E, Endothia Aspartic Proteinase (Endothiapepsin) Complexed
With Cp-81,282 (Mor Phe Nle Chf Nme)
pdb|1EPP|E Chain E, Endothia Aspartic Proteinase (endothiapepsin) Complexed
With Pd-130, 693 (mas Phe Lys+mtf Sta Mba)
pdb|1EPQ|E Chain E, Endothia Aspartic Proteinase (Endothiapepsin) Complexed
With Pd-133, 450 (Sot Phe Gly+scc Gcl)
pdb|1E5O|E Chain E, Endothiapepsin Complex With Inhibitor Db2
pdb|1E81|E Chain E, Endothiapepsin Complex With Renin Inhibitor
Merck-Kgaa-Emd61395
pdb|1E82|E Chain E, Endothiapepsin Complex With Renin Inhibitor
Merck-Kgaa-Emd59601
pdb|1E80|E Chain E, Endothiapepsin Complex With Renin Inhibitor
Merck-Kgaa-Emd56133
pdb|1OD1|A Chain A, Endothiapepsin Pd135,040 Complex
pdb|4APE|A Chain A, The Active Site Of Aspartic Proteinases
pdb|2V00|A Chain A, X-Ray Crystal Structure Of Endothiapepsin Complexed With
Compound 1
pdb|3LZY|A Chain A, Crystal Structure Of Endothiapesin In Complex With Xenon
pdb|3PB5|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PBD|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PBZ|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PCW|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PCZ|A Chain A, Endothiapepsin In Complex With Benzamidine
pdb|3PGI|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PRS|A Chain A, Endothiapepsin In Complex With Ritonavir
pdb|3PI0|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PLD|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PLL|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PM4|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PMU|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PMY|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PSY|A Chain A, Endothiapepsin In Complex With An Inhibitor Based On The
Gewald Reaction
pdb|3PWW|A Chain A, Endothiapepsin In Complex With Saquinavir
pdb|3Q6Y|A Chain A, Endothiapepsin In Complex With A Pyrrolidine Based
Inhibitor
pdb|3T6I|A Chain A, Endothiapepsin In Complex With An Azepin Derivative
pdb|3T7P|A Chain A, Endothiapepsin In Complex With A Hydrazide Derivative
pdb|3T7Q|A Chain A, Endothiapepsin In Complex With An Inhibitor Based On The
Gewald Reaction
pdb|3T7X|A Chain A, Endothiapepsin In Complex With An Inhibitor Based On The
Gewald Reaction
Length = 330
Score = 31.2 bits (69), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 22 YIVTVGIGTPKRKFSLIFDTGSDLTWTQCKPCVGFCYQQKEKIFDPKRSKSYR 74
YI V IGTP + +L FDTGS W + I+ P +S + +
Sbjct: 17 YITPVQIGTPAQTLNLDFDTGSSDLWVFSSETTA-SEVDGQTIYTPSKSTTAK 68
>pdb|1EAG|A Chain A, Secreted Aspartic Proteinase (Sap2) From Candida Albicans
Complexed With A70450
pdb|3PVK|A Chain A, Secreted Aspartic Protease 2 In Complex With Benzamidine
pdb|3Q70|A Chain A, Secreted Aspartic Protease In Complex With Ritonavir
Length = 342
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 75/368 (20%), Positives = 127/368 (34%), Gaps = 83/368 (22%)
Query: 22 YIVTVGIGTPKRKFSLIFDTGSDLTW----------TQCKPCVGFCYQQKEKIFDPKRSK 71
Y + +G+ +K ++I DTGS W T FC Q+ +DP S
Sbjct: 14 YAADITVGSNNQKLNVIVDTGSSDLWVPDVNVDCQVTYSDQTADFCKQKG--TYDPSGSS 71
Query: 72 SYRNXXXXXXXXXXLESATGNIPGCASNKTCVYGIQYGDSSFSVGFFAKET--------- 122
+ ++ N P + I YGD S S G K+T
Sbjct: 72 ASQDL---------------NTP---------FKIGYGDGSSSQGTLYKDTVGFGGVSIK 107
Query: 123 ---LTLTSKDVFPKFLLGCGQNNXXXXXXXXXXXXXXXNKISLVYQTASKYKKRFSYCLP 179
L + +LG G N + + K +S L
Sbjct: 108 NQVLADVDSTSIDQGILGVG-------YKTNEAGGSYDNVPVTLKKQGVIAKNAYSLYLN 160
Query: 180 SSSSSTGHLTFGPGIKKSVKFTPLSSAFQGSSFYGLDMTGISVGGEKLPIATTVFSTPGT 239
S ++TG + FG G+ + K++ A +S L IS+G ++ T
Sbjct: 161 SPDAATGQIIFG-GVDNA-KYSGSLIALPVTSDREL---RISLGSVEVSGKTINTDNVDV 215
Query: 240 IIDSGTVITRLPPHAYTVLKTAFRQLMSKYPTAPAVSIL------DTCYDFSEHETITIP 293
++DSGT IT L + AF +++ + + D ++FS++ I++P
Sbjct: 216 LLDSGTTITYLQQDLADQIIKAFNGKLTQDSNGNSFYEVDCNLSGDVVFNFSKNAKISVP 275
Query: 294 KISFF--FNGGVEVDVDVTGIMFPIRASQVCLAFAGNSDPSDVGIFGNVQQHTLEVVYDV 351
F G D ++F D +D I G+ + +VYD+
Sbjct: 276 ASEFAASLQGDDGQPYDKCQLLF---------------DVNDANILGDNFLRSAYIVYDL 320
Query: 352 AHGQVGFA 359
++ A
Sbjct: 321 DDNEISLA 328
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,167,332
Number of Sequences: 62578
Number of extensions: 389232
Number of successful extensions: 1011
Number of sequences better than 100.0: 106
Number of HSP's better than 100.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 59
Number of HSP's that attempted gapping in prelim test: 850
Number of HSP's gapped (non-prelim): 165
length of query: 364
length of database: 14,973,337
effective HSP length: 100
effective length of query: 264
effective length of database: 8,715,537
effective search space: 2300901768
effective search space used: 2300901768
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)