Query 017894
Match_columns 364
No_of_seqs 135 out of 1209
Neff 9.4
Searched_HMMs 46136
Date Fri Mar 29 04:21:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017894.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017894hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03146 aspartyl protease fam 100.0 2E-58 4.2E-63 440.7 40.1 346 7-364 70-429 (431)
2 cd05472 cnd41_like Chloroplast 100.0 5.8E-57 1.3E-61 414.3 35.0 294 21-363 1-299 (299)
3 cd05478 pepsin_A Pepsin A, asp 100.0 2E-55 4.3E-60 407.1 31.6 298 10-360 2-317 (317)
4 PTZ00165 aspartyl protease; Pr 100.0 3.2E-55 6.9E-60 420.6 32.8 306 7-364 109-449 (482)
5 cd05490 Cathepsin_D2 Cathepsin 100.0 4.2E-54 9.2E-59 399.7 32.1 298 16-360 1-325 (325)
6 cd05487 renin_like Renin stimu 100.0 3.5E-54 7.7E-59 400.1 30.4 297 16-361 3-326 (326)
7 cd05488 Proteinase_A_fungi Fun 100.0 5.9E-54 1.3E-58 397.6 30.7 299 9-360 1-320 (320)
8 cd05477 gastricsin Gastricsins 100.0 1.3E-53 2.9E-58 395.2 32.4 295 19-361 1-318 (318)
9 cd06096 Plasmepsin_5 Plasmepsi 100.0 1.3E-53 2.7E-58 396.2 32.3 292 20-364 2-326 (326)
10 cd06098 phytepsin Phytepsin, a 100.0 8E-54 1.7E-58 396.0 30.4 291 9-360 1-317 (317)
11 cd05486 Cathespin_E Cathepsin 100.0 6.5E-54 1.4E-58 396.8 29.6 291 22-360 1-316 (316)
12 KOG1339 Aspartyl protease [Pos 100.0 6.6E-53 1.4E-57 400.6 34.9 339 14-364 39-397 (398)
13 PTZ00147 plasmepsin-1; Provisi 100.0 9.1E-53 2E-57 400.7 32.3 304 4-362 125-450 (453)
14 cd05485 Cathepsin_D_like Cathe 100.0 6.2E-53 1.3E-57 391.9 30.2 297 16-360 6-329 (329)
15 PTZ00013 plasmepsin 4 (PM4); P 100.0 6.1E-52 1.3E-56 394.2 32.2 303 5-362 125-449 (450)
16 cd05473 beta_secretase_like Be 100.0 2.2E-50 4.7E-55 380.1 31.7 305 21-364 3-348 (364)
17 cd05476 pepsin_A_like_plant Ch 100.0 5.1E-50 1.1E-54 361.7 30.2 252 21-363 1-265 (265)
18 cd05489 xylanase_inhibitor_I_l 100.0 3.8E-49 8.2E-54 369.0 34.1 318 28-361 2-361 (362)
19 cd05475 nucellin_like Nucellin 100.0 3.3E-48 7.2E-53 351.1 31.1 256 20-363 1-273 (273)
20 cd06097 Aspergillopepsin_like 100.0 8.7E-49 1.9E-53 356.2 27.3 261 22-360 1-278 (278)
21 PF00026 Asp: Eukaryotic aspar 100.0 1.7E-49 3.7E-54 368.0 20.6 295 21-361 1-317 (317)
22 cd05474 SAP_like SAPs, pepsin- 100.0 3.6E-47 7.8E-52 349.0 27.1 270 20-361 1-295 (295)
23 cd05471 pepsin_like Pepsin-lik 100.0 7.6E-44 1.6E-48 324.8 28.2 264 22-360 1-283 (283)
24 PF14543 TAXi_N: Xylanase inhi 100.0 7.5E-29 1.6E-33 206.6 13.0 159 22-192 1-164 (164)
25 PF14541 TAXi_C: Xylanase inhi 99.9 4.9E-24 1.1E-28 177.5 15.2 149 212-360 1-161 (161)
26 cd05470 pepsin_retropepsin_lik 99.9 5.1E-22 1.1E-26 154.5 11.8 105 24-155 1-109 (109)
27 cd05483 retropepsin_like_bacte 98.2 1.3E-05 2.8E-10 60.1 8.2 93 20-156 1-93 (96)
28 TIGR02281 clan_AA_DTGA clan AA 97.3 0.0024 5.2E-08 50.1 8.8 101 9-156 2-102 (121)
29 PF13650 Asp_protease_2: Aspar 96.6 0.015 3.2E-07 42.6 8.1 88 24-155 1-88 (90)
30 cd05479 RP_DDI RP_DDI; retrope 95.9 0.093 2E-06 41.3 9.3 26 333-358 99-124 (124)
31 cd05479 RP_DDI RP_DDI; retrope 95.5 0.12 2.6E-06 40.7 8.7 33 17-51 12-44 (124)
32 TIGR02281 clan_AA_DTGA clan AA 95.5 0.24 5.1E-06 38.8 10.2 36 210-258 9-44 (121)
33 TIGR03698 clan_AA_DTGF clan AA 94.6 0.14 3.1E-06 39.1 6.7 23 334-356 85-107 (107)
34 COG3577 Predicted aspartyl pro 94.2 0.23 4.9E-06 42.0 7.2 79 17-135 101-179 (215)
35 cd05484 retropepsin_like_LTR_2 93.2 0.52 1.1E-05 34.6 7.2 30 219-258 4-33 (91)
36 PF08284 RVP_2: Retroviral asp 93.2 0.28 6.1E-06 39.2 6.0 28 334-361 105-132 (135)
37 cd05484 retropepsin_like_LTR_2 93.1 0.12 2.6E-06 38.2 3.5 28 22-51 1-28 (91)
38 PF13975 gag-asp_proteas: gag- 91.3 0.36 7.9E-06 33.9 4.1 34 17-52 4-37 (72)
39 PF13650 Asp_protease_2: Aspar 88.7 0.64 1.4E-05 33.6 3.8 29 220-258 3-31 (90)
40 cd05483 retropepsin_like_bacte 86.7 1.7 3.7E-05 31.8 5.1 29 220-258 7-35 (96)
41 PF12384 Peptidase_A2B: Ty3 tr 85.7 2.6 5.7E-05 34.4 5.8 52 197-258 16-67 (177)
42 PF13975 gag-asp_proteas: gag- 85.7 1.7 3.7E-05 30.4 4.4 29 220-258 13-41 (72)
43 PF00077 RVP: Retroviral aspar 83.7 1.8 3.9E-05 32.2 4.0 27 23-51 7-33 (100)
44 PF11925 DUF3443: Protein of u 83.3 40 0.00087 31.6 13.4 51 107-159 83-150 (370)
45 cd06095 RP_RTVL_H_like Retrope 81.9 1.8 3.9E-05 31.4 3.3 26 25-52 2-27 (86)
46 cd06095 RP_RTVL_H_like Retrope 81.8 2.2 4.8E-05 30.9 3.7 29 220-258 3-31 (86)
47 COG3577 Predicted aspartyl pro 74.4 8.4 0.00018 32.8 5.4 36 210-258 103-138 (215)
48 PF00077 RVP: Retroviral aspar 73.1 3.7 8.1E-05 30.5 2.9 27 219-255 9-35 (100)
49 cd06094 RP_Saci_like RP_Saci_l 70.3 14 0.00031 27.0 5.2 75 238-345 11-87 (89)
50 cd05482 HIV_retropepsin_like R 69.8 6.5 0.00014 28.7 3.4 25 25-51 2-26 (87)
51 cd05481 retropepsin_like_LTR_1 68.0 7.3 0.00016 28.8 3.4 21 239-259 13-33 (93)
52 PF09668 Asp_protease: Asparty 66.8 7.9 0.00017 30.3 3.5 29 220-258 29-57 (124)
53 TIGR03698 clan_AA_DTGF clan AA 63.1 34 0.00074 25.9 6.4 26 24-49 2-32 (107)
54 PF12384 Peptidase_A2B: Ty3 tr 60.5 13 0.00029 30.5 3.8 30 22-51 33-62 (177)
55 PF02160 Peptidase_A3: Caulifl 59.2 55 0.0012 28.0 7.5 28 332-360 90-117 (201)
56 PF09668 Asp_protease: Asparty 58.3 18 0.00039 28.4 4.1 38 18-58 21-58 (124)
57 COG5550 Predicted aspartyl pro 55.9 44 0.00096 26.0 5.8 20 239-258 29-49 (125)
58 cd05480 NRIP_C NRIP_C; putativ 33.6 62 0.0013 24.3 3.4 28 221-258 4-31 (103)
59 cd05486 Cathespin_E Cathepsin 31.2 44 0.00096 30.6 2.9 34 18-51 175-215 (316)
60 cd06098 phytepsin Phytepsin, a 30.9 55 0.0012 30.1 3.5 33 19-51 187-227 (317)
61 cd00303 retropepsin_like Retro 30.1 94 0.002 20.8 4.0 19 239-257 12-30 (92)
62 cd05475 nucellin_like Nucellin 29.4 81 0.0018 28.2 4.3 32 20-51 157-194 (273)
63 PF08284 RVP_2: Retroviral asp 27.8 88 0.0019 24.8 3.7 30 20-51 20-49 (135)
64 KOG0012 DNA damage inducible p 26.9 4.4E+02 0.0095 24.8 8.3 39 321-361 307-346 (380)
65 PLN03146 aspartyl protease fam 26.6 89 0.0019 30.3 4.2 42 8-51 269-324 (431)
66 PTZ00147 plasmepsin-1; Provisi 20.9 78 0.0017 30.9 2.6 34 18-51 313-349 (453)
67 cd05471 pepsin_like Pepsin-lik 20.7 93 0.002 27.5 3.0 34 19-52 179-220 (283)
68 PTZ00013 plasmepsin 4 (PM4); P 20.6 82 0.0018 30.7 2.7 34 18-51 312-348 (450)
69 cd06097 Aspergillopepsin_like 20.3 99 0.0022 27.6 3.1 17 239-255 16-32 (278)
No 1
>PLN03146 aspartyl protease family protein; Provisional
Probab=100.00 E-value=2e-58 Score=440.73 Aligned_cols=346 Identities=37% Similarity=0.681 Sum_probs=286.8
Q ss_pred cccccccCCccCCccEEEEEEeCCCCcEEEEEEEcCCcceeEeCCCcccCcCCCCCCCCCCCCCCcccccCCCCCccCCc
Q 017894 7 ATLPAIHGSVVGSGNYIVTVGIGTPKRKFSLIFDTGSDLTWTQCKPCVGFCYQQKEKIFDPKRSKSYRNVSCSSTVCSSL 86 (364)
Q Consensus 7 ~~~p~~~~~~~~~~~y~~~i~iGtP~q~~~~~~DTgS~~~wv~~~~c~~~c~~~~~~~y~~s~Sst~~~~~~~~~~c~~~ 86 (364)
...|+..+...+++.|+++|.||||||++.|++||||+++||+|.+|. .|..+..+.|||++|+||+.++|.++.|...
T Consensus 70 ~~~~~~~~~~~~~~~Y~v~i~iGTPpq~~~vi~DTGS~l~Wv~C~~C~-~C~~~~~~~fdps~SST~~~~~C~s~~C~~~ 148 (431)
T PLN03146 70 SPNDPQSDLISNGGEYLMNISIGTPPVPILAIADTGSDLIWTQCKPCD-DCYKQVSPLFDPKKSSTYKDVSCDSSQCQAL 148 (431)
T ss_pred cCCccccCcccCCccEEEEEEcCCCCceEEEEECCCCCcceEcCCCCc-ccccCCCCcccCCCCCCCcccCCCCcccccC
Confidence 345777666677889999999999999999999999999999999995 5987777899999999999999999999765
Q ss_pred ccCCCCCCCCCCCCcceeeEEeCCCCceEEEEEEEEEEecCC----CccCCeEEeeccCCCCCCC-CcCeEEecCCCCCh
Q 017894 87 ESATGNIPGCASNKTCVYGIQYGDSSFSVGFFAKETLTLTSK----DVFPKFLLGCGQNNRGLFR-GAAGLLGLGRNKIS 161 (364)
Q Consensus 87 ~~~~~~~~~c~~~~~~~~~~~y~~g~~~~G~~~~D~v~i~~~----~~~~~~~fg~a~~~~~~~~-~~~GilGLg~~~~s 161 (364)
.. ...|..++.|.|.+.|++|+.+.|.+++|+|+|++. ..++++.|||++...+.+. ..+||||||+.+++
T Consensus 149 ~~----~~~c~~~~~c~y~i~Ygdgs~~~G~l~~Dtltlg~~~~~~~~v~~~~FGc~~~~~g~f~~~~~GilGLG~~~~S 224 (431)
T PLN03146 149 GN----QASCSDENTCTYSYSYGDGSFTKGNLAVETLTIGSTSGRPVSFPGIVFGCGHNNGGTFDEKGSGIVGLGGGPLS 224 (431)
T ss_pred CC----CCCCCCCCCCeeEEEeCCCCceeeEEEEEEEEeccCCCCcceeCCEEEeCCCCCCCCccCCCceeEecCCCCcc
Confidence 43 234766667999999999987899999999999973 2488999999998876554 58999999999999
Q ss_pred hHHHhhhhcCCcEEEeCCCCC---CCceeEEeCCCC--C-CCceEeecccCCCCCcceEEEeeEEEECCEEeeeccccCC
Q 017894 162 LVYQTASKYKKRFSYCLPSSS---SSTGHLTFGPGI--K-KSVKFTPLSSAFQGSSFYGLDMTGISVGGEKLPIATTVFS 235 (364)
Q Consensus 162 ~~~q~~~~~~~~fsl~l~~~~---~~~g~l~fGg~d--~-~~l~~~p~~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~ 235 (364)
++.|+.....++||+||.+.. ...|.|+||+.. . +.+.|+|+..+.. ..+|.|.|++|+|+++.++++...+.
T Consensus 225 l~sql~~~~~~~FSycL~~~~~~~~~~g~l~fG~~~~~~~~~~~~tPl~~~~~-~~~y~V~L~gIsVgg~~l~~~~~~~~ 303 (431)
T PLN03146 225 LISQLGSSIGGKFSYCLVPLSSDSNGTSKINFGTNAIVSGSGVVSTPLVSKDP-DTFYYLTLEAISVGSKKLPYTGSSKN 303 (431)
T ss_pred HHHHhhHhhCCcEEEECCCCCCCCCCcceEEeCCccccCCCCceEcccccCCC-CCeEEEeEEEEEECCEECcCCccccc
Confidence 999987654579999997532 247999999954 2 3589999986422 57899999999999999877655431
Q ss_pred ---CCCEEEecCCcceecChhHHHHHHHHHHHHHhcCCCCCCccccccceeccCCccccCCeEEEEEcCCcEEEeCCCce
Q 017894 236 ---TPGTIIDSGTVITRLPPHAYTVLKTAFRQLMSKYPTAPAVSILDTCYDFSEHETITIPKISFFFNGGVEVDVDVTGI 312 (364)
Q Consensus 236 ---~~~aiiDtgt~~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~P~i~~~~~g~~~~~i~~~~~ 312 (364)
.+.+||||||++++||+++|++|.+++...+...........+..||.... ...+|+|+|+| +|+++.|++++|
T Consensus 304 ~~~~g~~iiDSGTt~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~--~~~~P~i~~~F-~Ga~~~l~~~~~ 380 (431)
T PLN03146 304 GVEEGNIIIDSGTTLTLLPSDFYSELESAVEEAIGGERVSDPQGLLSLCYSSTS--DIKLPIITAHF-TGADVKLQPLNT 380 (431)
T ss_pred cCCCCcEEEeCCccceecCHHHHHHHHHHHHHHhccccCCCCCCCCCccccCCC--CCCCCeEEEEE-CCCeeecCccee
Confidence 246999999999999999999999999988753322222334567887432 24789999999 589999999999
Q ss_pred EEEcCCCeEEEEEEcCCCCCCeeEecccceeeeEEEEECCCCEEEEEeCCCC
Q 017894 313 MFPIRASQVCLAFAGNSDPSDVGIFGNVQQHTLEVVYDVAHGQVGFAAGGCS 364 (364)
Q Consensus 313 ~~~~~~~~~C~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~rigfa~~~c~ 364 (364)
+++...+..|+++... .+.+|||..|||++|++||++++|||||+++|.
T Consensus 381 ~~~~~~~~~Cl~~~~~---~~~~IlG~~~q~~~~vvyDl~~~~igFa~~~C~ 429 (431)
T PLN03146 381 FVKVSEDLVCFAMIPT---SSIAIFGNLAQMNFLVGYDLESKTVSFKPTDCT 429 (431)
T ss_pred EEEcCCCcEEEEEecC---CCceEECeeeEeeEEEEEECCCCEEeeecCCcC
Confidence 9987667789988754 235999999999999999999999999999995
No 2
>cd05472 cnd41_like Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco. Antisense tobacco with reduced amount of CND41 maintained green leaves and constant protein levels, especially Rubisco. CND41 has DNA-binding as well as aspartic protease activities. The pepsin-like aspartic protease domain is located at the C-terminus of the protein. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. This fami
Probab=100.00 E-value=5.8e-57 Score=414.27 Aligned_cols=294 Identities=57% Similarity=1.041 Sum_probs=250.1
Q ss_pred cEEEEEEeCCCCcEEEEEEEcCCcceeEeCCCcccCcCCCCCCCCCCCCCCcccccCCCCCccCCcccCCCCCCCCCCCC
Q 017894 21 NYIVTVGIGTPKRKFSLIFDTGSDLTWTQCKPCVGFCYQQKEKIFDPKRSKSYRNVSCSSTVCSSLESATGNIPGCASNK 100 (364)
Q Consensus 21 ~y~~~i~iGtP~q~~~~~~DTgS~~~wv~~~~c~~~c~~~~~~~y~~s~Sst~~~~~~~~~~c~~~~~~~~~~~~c~~~~ 100 (364)
+|+++|.||||||++.|++||||+++||+|.+|
T Consensus 1 ~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~c~~c----------------------------------------------- 33 (299)
T cd05472 1 EYVVTVGLGTPARDQTVIVDTGSDLTWVQCQPC----------------------------------------------- 33 (299)
T ss_pred CeEEEEecCCCCcceEEEecCCCCcccccCCCC-----------------------------------------------
Confidence 489999999999999999999999999987654
Q ss_pred cceeeEEeCCCCceEEEEEEEEEEecCCC-ccCCeEEeeccCCCCCCCCcCeEEecCCCCChhHHHhhhhcCCcEEEeCC
Q 017894 101 TCVYGIQYGDSSFSVGFFAKETLTLTSKD-VFPKFLLGCGQNNRGLFRGAAGLLGLGRNKISLVYQTASKYKKRFSYCLP 179 (364)
Q Consensus 101 ~~~~~~~y~~g~~~~G~~~~D~v~i~~~~-~~~~~~fg~a~~~~~~~~~~~GilGLg~~~~s~~~q~~~~~~~~fsl~l~ 179 (364)
|.|.+.|++|+.++|.+++|+|+|++ . .++++.|||+....+.+...+||||||+...+++.|+....+++||+||.
T Consensus 34 -~~~~i~Yg~Gs~~~G~~~~D~v~ig~-~~~~~~~~Fg~~~~~~~~~~~~~GilGLg~~~~s~~~ql~~~~~~~FS~~L~ 111 (299)
T cd05472 34 -CLYQVSYGDGSYTTGDLATDTLTLGS-SDVVPGFAFGCGHDNEGLFGGAAGLLGLGRGKLSLPSQTASSYGGVFSYCLP 111 (299)
T ss_pred -CeeeeEeCCCceEEEEEEEEEEEeCC-CCccCCEEEECCccCCCccCCCCEEEECCCCcchHHHHhhHhhcCceEEEcc
Confidence 26788999998779999999999998 5 78999999999887666689999999999999999987765799999998
Q ss_pred CCC-CCceeEEeCCCCC--CCceEeecccCCCCCcceEEEeeEEEECCEEeeeccccCCCCCEEEecCCcceecChhHHH
Q 017894 180 SSS-SSTGHLTFGPGIK--KSVKFTPLSSAFQGSSFYGLDMTGISVGGEKLPIATTVFSTPGTIIDSGTVITRLPPHAYT 256 (364)
Q Consensus 180 ~~~-~~~g~l~fGg~d~--~~l~~~p~~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~~~aiiDtgt~~~~lp~~~~~ 256 (364)
+.. ...|+|+||++|+ +++.|+|+..++....+|.|++.+|+|+++.+..+........++|||||++++||+++++
T Consensus 112 ~~~~~~~G~l~fGg~d~~~g~l~~~pv~~~~~~~~~y~v~l~~i~vg~~~~~~~~~~~~~~~~ivDSGTt~~~lp~~~~~ 191 (299)
T cd05472 112 DRSSSSSGYLSFGAAASVPAGASFTPMLSNPRVPTFYYVGLTGISVGGRRLPIPPASFGAGGVIIDSGTVITRLPPSAYA 191 (299)
T ss_pred CCCCCCCceEEeCCccccCCCceECCCccCCCCCCeEEEeeEEEEECCEECCCCccccCCCCeEEeCCCcceecCHHHHH
Confidence 754 4589999999997 7999999988654457899999999999998865432222256999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCccccccceeccCCccccCCeEEEEEcCCcEEEeCCCceEEE-cCCCeEEEEEEcCCCCCCee
Q 017894 257 VLKTAFRQLMSKYPTAPAVSILDTCYDFSEHETITIPKISFFFNGGVEVDVDVTGIMFP-IRASQVCLAFAGNSDPSDVG 335 (364)
Q Consensus 257 ~l~~~l~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~P~i~~~~~g~~~~~i~~~~~~~~-~~~~~~C~~~~~~~~~~~~~ 335 (364)
+|.+++.+.....+.......++.|+..+|.....+|+|+|+|.++++++|++++|++. ...+..|+++...+.....+
T Consensus 192 ~l~~~l~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~~g~~~~l~~~~y~~~~~~~~~~C~~~~~~~~~~~~~ 271 (299)
T cd05472 192 ALRDAFRAAMAAYPRAPGFSILDTCYDLSGFRSVSVPTVSLHFQGGADVELDASGVLYPVDDSSQVCLAFAGTSDDGGLS 271 (299)
T ss_pred HHHHHHHHHhccCCCCCCCCCCCccCcCCCCcCCccCCEEEEECCCCEEEeCcccEEEEecCCCCEEEEEeCCCCCCCCE
Confidence 99999998754433333334455699888776678999999996589999999999994 34467899887764345679
Q ss_pred EecccceeeeEEEEECCCCEEEEEeCCC
Q 017894 336 IFGNVQQHTLEVVYDVAHGQVGFAAGGC 363 (364)
Q Consensus 336 ilG~~fl~~~y~vfD~~~~rigfa~~~c 363 (364)
|||..|||++|+|||++++|||||+++|
T Consensus 272 ilG~~fl~~~~vvfD~~~~~igfa~~~C 299 (299)
T cd05472 272 IIGNVQQQTFRVVYDVAGGRIGFAPGGC 299 (299)
T ss_pred EEchHHccceEEEEECCCCEEeEecCCC
Confidence 9999999999999999999999999999
No 3
>cd05478 pepsin_A Pepsin A, aspartic protease produced in gastric mucosa of mammals. Pepsin, a well-known aspartic protease, is produced by the human gastric mucosa in seven different zymogen isoforms, subdivided into two types: pepsinogen A and pepsinogen C. The prosequence of the zymogens are self cleaved under acidic pH. The mature enzymes are called pepsin A and pepsin C, correspondingly. The well researched porcine pepsin is also in this pepsin A family. Pepsins play an integral role in the digestion process of vertebrates. Pepsins are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. More recently evolved enzymes have similar three-dimensional structures, however their amino acid sequences are more divergent except for the conserved catalytic site motif. Pepsins specifically cleave bonds in peptides which
Probab=100.00 E-value=2e-55 Score=407.07 Aligned_cols=298 Identities=22% Similarity=0.394 Sum_probs=253.5
Q ss_pred ccccCCccCCccEEEEEEeCCCCcEEEEEEEcCCcceeEeCCCcc-cCcCCCCCCCCCCCCCCcccccCCCCCccCCccc
Q 017894 10 PAIHGSVVGSGNYIVTVGIGTPKRKFSLIFDTGSDLTWTQCKPCV-GFCYQQKEKIFDPKRSKSYRNVSCSSTVCSSLES 88 (364)
Q Consensus 10 p~~~~~~~~~~~y~~~i~iGtP~q~~~~~~DTgS~~~wv~~~~c~-~~c~~~~~~~y~~s~Sst~~~~~~~~~~c~~~~~ 88 (364)
||+ ++.+..|+++|.||||+|++.|+|||||+++||++..|. ..|..+ +.|+|++|+|++..
T Consensus 2 ~l~---n~~~~~Y~~~i~vGtp~q~~~v~~DTGS~~~wv~~~~C~~~~c~~~--~~f~~~~Sst~~~~------------ 64 (317)
T cd05478 2 PLT---NYLDMEYYGTISIGTPPQDFTVIFDTGSSNLWVPSVYCSSQACSNH--NRFNPRQSSTYQST------------ 64 (317)
T ss_pred ccc---cccCCEEEEEEEeCCCCcEEEEEEeCCCccEEEecCCCCccccccc--CcCCCCCCcceeeC------------
Confidence 666 778999999999999999999999999999999999994 356554 89999999999886
Q ss_pred CCCCCCCCCCCCcceeeEEeCCCCceEEEEEEEEEEecCCCccCCeEEeeccCCCCCC---CCcCeEEecCCCCC-----
Q 017894 89 ATGNIPGCASNKTCVYGIQYGDSSFSVGFFAKETLTLTSKDVFPKFLLGCGQNNRGLF---RGAAGLLGLGRNKI----- 160 (364)
Q Consensus 89 ~~~~~~~c~~~~~~~~~~~y~~g~~~~G~~~~D~v~i~~~~~~~~~~fg~a~~~~~~~---~~~~GilGLg~~~~----- 160 (364)
.+.+.+.|++|+ +.|.+++|+|+|++ ..++++.||++....+.+ ...+||||||++.+
T Consensus 65 ------------~~~~~~~yg~gs-~~G~~~~D~v~ig~-~~i~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~ 130 (317)
T cd05478 65 ------------GQPLSIQYGTGS-MTGILGYDTVQVGG-ISDTNQIFGLSETEPGSFFYYAPFDGILGLAYPSIASSGA 130 (317)
T ss_pred ------------CcEEEEEECCce-EEEEEeeeEEEECC-EEECCEEEEEEEecCccccccccccceeeeccchhcccCC
Confidence 468999999998 89999999999999 699999999998775533 25799999998754
Q ss_pred -hhHHHhhhhc---CCcEEEeCCCCCCCceeEEeCCCC----CCCceEeecccCCCCCcceEEEeeEEEECCEEeeeccc
Q 017894 161 -SLVYQTASKY---KKRFSYCLPSSSSSTGHLTFGPGI----KKSVKFTPLSSAFQGSSFYGLDMTGISVGGEKLPIATT 232 (364)
Q Consensus 161 -s~~~q~~~~~---~~~fsl~l~~~~~~~g~l~fGg~d----~~~l~~~p~~~~~~~~~~w~v~l~~i~v~~~~~~~~~~ 232 (364)
++++|+..+. ++.||+||.+.....|.|+|||+| .+++.|+|+.. ..+|.|.+++++|+++.+.....
T Consensus 131 ~~~~~~L~~~g~i~~~~FS~~L~~~~~~~g~l~~Gg~d~~~~~g~l~~~p~~~----~~~w~v~l~~v~v~g~~~~~~~~ 206 (317)
T cd05478 131 TPVFDNMMSQGLVSQDLFSVYLSSNGQQGSVVTFGGIDPSYYTGSLNWVPVTA----ETYWQITVDSVTINGQVVACSGG 206 (317)
T ss_pred CCHHHHHHhCCCCCCCEEEEEeCCCCCCCeEEEEcccCHHHccCceEEEECCC----CcEEEEEeeEEEECCEEEccCCC
Confidence 3666766553 689999999876568999999998 47999999976 68999999999999998764332
Q ss_pred cCCCCCEEEecCCcceecChhHHHHHHHHHHHHHhcCCCCCCccccccceeccCCccccCCeEEEEEcCCcEEEeCCCce
Q 017894 233 VFSTPGTIIDSGTVITRLPPHAYTVLKTAFRQLMSKYPTAPAVSILDTCYDFSEHETITIPKISFFFNGGVEVDVDVTGI 312 (364)
Q Consensus 233 ~~~~~~aiiDtgt~~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~P~i~~~~~g~~~~~i~~~~~ 312 (364)
..++|||||++++||++++++|++++++. .. .. .++.++|.....+|+|+|.| +|++++|++++|
T Consensus 207 ----~~~iiDTGts~~~lp~~~~~~l~~~~~~~---~~-~~------~~~~~~C~~~~~~P~~~f~f-~g~~~~i~~~~y 271 (317)
T cd05478 207 ----CQAIVDTGTSLLVGPSSDIANIQSDIGAS---QN-QN------GEMVVNCSSISSMPDVVFTI-NGVQYPLPPSAY 271 (317)
T ss_pred ----CEEEECCCchhhhCCHHHHHHHHHHhCCc---cc-cC------CcEEeCCcCcccCCcEEEEE-CCEEEEECHHHh
Confidence 35999999999999999999999988654 11 11 24788888777899999999 789999999999
Q ss_pred EEEcCCCeEEE-EEEcCCCCCCeeEecccceeeeEEEEECCCCEEEEEe
Q 017894 313 MFPIRASQVCL-AFAGNSDPSDVGIFGNVQQHTLEVVYDVAHGQVGFAA 360 (364)
Q Consensus 313 ~~~~~~~~~C~-~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~rigfa~ 360 (364)
+.+. ...|+ .|...+ ....||||.+|||++|+|||++++|||||+
T Consensus 272 ~~~~--~~~C~~~~~~~~-~~~~~IlG~~fl~~~y~vfD~~~~~iG~A~ 317 (317)
T cd05478 272 ILQD--QGSCTSGFQSMG-LGELWILGDVFIRQYYSVFDRANNKVGLAP 317 (317)
T ss_pred eecC--CCEEeEEEEeCC-CCCeEEechHHhcceEEEEeCCCCEEeecC
Confidence 9875 67898 566543 346799999999999999999999999996
No 4
>PTZ00165 aspartyl protease; Provisional
Probab=100.00 E-value=3.2e-55 Score=420.56 Aligned_cols=306 Identities=21% Similarity=0.376 Sum_probs=251.7
Q ss_pred cccccccCCccCCccEEEEEEeCCCCcEEEEEEEcCCcceeEeCCCcc-cCcCCCCCCCCCCCCCCcccccCCCCCccCC
Q 017894 7 ATLPAIHGSVVGSGNYIVTVGIGTPKRKFSLIFDTGSDLTWTQCKPCV-GFCYQQKEKIFDPKRSKSYRNVSCSSTVCSS 85 (364)
Q Consensus 7 ~~~p~~~~~~~~~~~y~~~i~iGtP~q~~~~~~DTgS~~~wv~~~~c~-~~c~~~~~~~y~~s~Sst~~~~~~~~~~c~~ 85 (364)
.+.||. ++.+.+|+++|.||||||++.|++||||+++||++..|. ..|..+ +.||+++|+||+++.+..
T Consensus 109 ~~~~l~---n~~d~~Y~~~I~IGTPpQ~f~Vv~DTGSS~lWVps~~C~~~~C~~~--~~yd~s~SSTy~~~~~~~----- 178 (482)
T PTZ00165 109 LQQDLL---NFHNSQYFGEIQVGTPPKSFVVVFDTGSSNLWIPSKECKSGGCAPH--RKFDPKKSSTYTKLKLGD----- 178 (482)
T ss_pred cceecc---cccCCeEEEEEEeCCCCceEEEEEeCCCCCEEEEchhcCccccccc--CCCCccccCCcEecCCCC-----
Confidence 566776 889999999999999999999999999999999999994 467765 899999999999852110
Q ss_pred cccCCCCCCCCCCCCcceeeEEeCCCCceEEEEEEEEEEecCCCccCCeEEeeccCCCC-CCC--CcCeEEecCCCCC--
Q 017894 86 LESATGNIPGCASNKTCVYGIQYGDSSFSVGFFAKETLTLTSKDVFPKFLLGCGQNNRG-LFR--GAAGLLGLGRNKI-- 160 (364)
Q Consensus 86 ~~~~~~~~~~c~~~~~~~~~~~y~~g~~~~G~~~~D~v~i~~~~~~~~~~fg~a~~~~~-~~~--~~~GilGLg~~~~-- 160 (364)
+...+.+.|++|+ +.|.+++|+|+|++ +.++++.||++....+ .|. .+|||||||++.+
T Consensus 179 --------------~~~~~~i~YGsGs-~~G~l~~DtV~ig~-l~i~~q~FG~a~~~s~~~f~~~~~DGILGLg~~~~s~ 242 (482)
T PTZ00165 179 --------------ESAETYIQYGTGE-CVLALGKDTVKIGG-LKVKHQSIGLAIEESLHPFADLPFDGLVGLGFPDKDF 242 (482)
T ss_pred --------------ccceEEEEeCCCc-EEEEEEEEEEEECC-EEEccEEEEEEEeccccccccccccceeecCCCcccc
Confidence 0125779999997 88999999999999 7999999999998754 332 6899999998764
Q ss_pred -------hhHHHhhhhc---CCcEEEeCCCCCCCceeEEeCCCCC------CCceEeecccCCCCCcceEEEeeEEEECC
Q 017894 161 -------SLVYQTASKY---KKRFSYCLPSSSSSTGHLTFGPGIK------KSVKFTPLSSAFQGSSFYGLDMTGISVGG 224 (364)
Q Consensus 161 -------s~~~q~~~~~---~~~fsl~l~~~~~~~g~l~fGg~d~------~~l~~~p~~~~~~~~~~w~v~l~~i~v~~ 224 (364)
.+.+++..+. +++||+||++....+|+|+|||+|+ +++.|+|+.. ..+|+|++++|+|++
T Consensus 243 ~s~~~~~p~~~~l~~qgli~~~~FS~yL~~~~~~~G~l~fGGiD~~~~~~~g~i~~~Pv~~----~~yW~i~l~~i~vgg 318 (482)
T PTZ00165 243 KESKKALPIVDNIKKQNLLKRNIFSFYMSKDLNQPGSISFGSADPKYTLEGHKIWWFPVIS----TDYWEIEVVDILIDG 318 (482)
T ss_pred cccCCCCCHHHHHHHcCCcccceEEEEeccCCCCCCEEEeCCcCHHHcCCCCceEEEEccc----cceEEEEeCeEEECC
Confidence 2455555442 7999999987655689999999873 4799999987 789999999999999
Q ss_pred EEeeeccccCCCCCEEEecCCcceecChhHHHHHHHHHHHHHhcCCCCCCccccccceeccCCccccCCeEEEEEcCCc-
Q 017894 225 EKLPIATTVFSTPGTIIDSGTVITRLPPHAYTVLKTAFRQLMSKYPTAPAVSILDTCYDFSEHETITIPKISFFFNGGV- 303 (364)
Q Consensus 225 ~~~~~~~~~~~~~~aiiDtgt~~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~P~i~~~~~g~~- 303 (364)
+.+...... ..|++||||+++.+|.+++++|.+++++. .+|.....+|+|+|+| ++.
T Consensus 319 ~~~~~~~~~---~~aIiDTGTSli~lP~~~~~~i~~~i~~~------------------~~C~~~~~lP~itf~f-~g~~ 376 (482)
T PTZ00165 319 KSLGFCDRK---CKAAIDTGSSLITGPSSVINPLLEKIPLE------------------EDCSNKDSLPRISFVL-EDVN 376 (482)
T ss_pred EEeeecCCc---eEEEEcCCCccEeCCHHHHHHHHHHcCCc------------------ccccccccCCceEEEE-CCCC
Confidence 877653222 35999999999999999999999887543 1344556899999999 443
Q ss_pred ----EEEeCCCceEEEc----CCCeEEE-EEEcCCC---CCCeeEecccceeeeEEEEECCCCEEEEEeCCCC
Q 017894 304 ----EVDVDVTGIMFPI----RASQVCL-AFAGNSD---PSDVGIFGNVQQHTLEVVYDVAHGQVGFAAGGCS 364 (364)
Q Consensus 304 ----~~~i~~~~~~~~~----~~~~~C~-~~~~~~~---~~~~~ilG~~fl~~~y~vfD~~~~rigfa~~~c~ 364 (364)
+++|+|++|+++. ..+..|+ ++...+. .++.||||.+|||++|+|||.+++|||||+++|+
T Consensus 377 g~~v~~~l~p~dYi~~~~~~~~~~~~C~~g~~~~d~~~~~g~~~ILGd~Flr~yy~VFD~~n~rIGfA~a~~~ 449 (482)
T PTZ00165 377 GRKIKFDMDPEDYVIEEGDSEEQEHQCVIGIIPMDVPAPRGPLFVLGNNFIRKYYSIFDRDHMMVGLVPAKHD 449 (482)
T ss_pred CceEEEEEchHHeeeecccCCCCCCeEEEEEEECCCCCCCCceEEEchhhheeEEEEEeCCCCEEEEEeeccC
Confidence 8999999999973 2356897 7876532 3467999999999999999999999999999985
No 5
>cd05490 Cathepsin_D2 Cathepsin_D2, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets and flank
Probab=100.00 E-value=4.2e-54 Score=399.72 Aligned_cols=298 Identities=24% Similarity=0.444 Sum_probs=245.4
Q ss_pred ccCCccEEEEEEeCCCCcEEEEEEEcCCcceeEeCCCcc---cCcCCCCCCCCCCCCCCcccccCCCCCccCCcccCCCC
Q 017894 16 VVGSGNYIVTVGIGTPKRKFSLIFDTGSDLTWTQCKPCV---GFCYQQKEKIFDPKRSKSYRNVSCSSTVCSSLESATGN 92 (364)
Q Consensus 16 ~~~~~~y~~~i~iGtP~q~~~~~~DTgS~~~wv~~~~c~---~~c~~~~~~~y~~s~Sst~~~~~~~~~~c~~~~~~~~~ 92 (364)
++.+.+|+++|.||||+|++.|+|||||+++||++..|. ..|..+ +.|+|++|+|++..
T Consensus 1 ~~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~C~~~--~~y~~~~SsT~~~~---------------- 62 (325)
T cd05490 1 NYMDAQYYGEIGIGTPPQTFTVVFDTGSSNLWVPSVHCSLLDIACWLH--HKYNSSKSSTYVKN---------------- 62 (325)
T ss_pred CCcCCEEEEEEEECCCCcEEEEEEeCCCccEEEEcCCCCCCCccccCc--CcCCcccCcceeeC----------------
Confidence 356889999999999999999999999999999999985 357655 78999999999874
Q ss_pred CCCCCCCCcceeeEEeCCCCceEEEEEEEEEEecCCCccCCeEEeeccCCCC-CC--CCcCeEEecCCCCCh------hH
Q 017894 93 IPGCASNKTCVYGIQYGDSSFSVGFFAKETLTLTSKDVFPKFLLGCGQNNRG-LF--RGAAGLLGLGRNKIS------LV 163 (364)
Q Consensus 93 ~~~c~~~~~~~~~~~y~~g~~~~G~~~~D~v~i~~~~~~~~~~fg~a~~~~~-~~--~~~~GilGLg~~~~s------~~ 163 (364)
.+.+.+.|++|+ +.|.+++|+|+|++ ..++++.||++....+ .+ ..++||||||++..+ ++
T Consensus 63 --------~~~~~i~Yg~G~-~~G~~~~D~v~~g~-~~~~~~~Fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~ 132 (325)
T cd05490 63 --------GTEFAIQYGSGS-LSGYLSQDTVSIGG-LQVEGQLFGEAVKQPGITFIAAKFDGILGMAYPRISVDGVTPVF 132 (325)
T ss_pred --------CcEEEEEECCcE-EEEEEeeeEEEECC-EEEcCEEEEEEeeccCCcccceeeeEEEecCCccccccCCCCHH
Confidence 478999999997 89999999999999 6999999999987754 23 367999999987654 44
Q ss_pred HHhhhhc---CCcEEEeCCCCC--CCceeEEeCCCCC----CCceEeecccCCCCCcceEEEeeEEEECCEEeeeccccC
Q 017894 164 YQTASKY---KKRFSYCLPSSS--SSTGHLTFGPGIK----KSVKFTPLSSAFQGSSFYGLDMTGISVGGEKLPIATTVF 234 (364)
Q Consensus 164 ~q~~~~~---~~~fsl~l~~~~--~~~g~l~fGg~d~----~~l~~~p~~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~ 234 (364)
+++..+. +++||+||.+.. ...|.|+|||+|+ +++.|+|+.. ..+|.|++++|+|++........
T Consensus 133 ~~l~~~g~i~~~~FS~~L~~~~~~~~~G~l~~Gg~d~~~~~g~l~~~~~~~----~~~w~v~l~~i~vg~~~~~~~~~-- 206 (325)
T cd05490 133 DNIMAQKLVEQNVFSFYLNRDPDAQPGGELMLGGTDPKYYTGDLHYVNVTR----KAYWQIHMDQVDVGSGLTLCKGG-- 206 (325)
T ss_pred HHHHhcCCCCCCEEEEEEeCCCCCCCCCEEEECccCHHHcCCceEEEEcCc----ceEEEEEeeEEEECCeeeecCCC--
Confidence 5555432 699999998643 2479999999984 7999999976 67999999999999875332221
Q ss_pred CCCCEEEecCCcceecChhHHHHHHHHHHHHHhcCCCCCCccccccceeccCCccccCCeEEEEEcCCcEEEeCCCceEE
Q 017894 235 STPGTIIDSGTVITRLPPHAYTVLKTAFRQLMSKYPTAPAVSILDTCYDFSEHETITIPKISFFFNGGVEVDVDVTGIMF 314 (364)
Q Consensus 235 ~~~~aiiDtgt~~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~P~i~~~~~g~~~~~i~~~~~~~ 314 (364)
..++|||||+++++|.+++++|.+++.+. +...+ +|.++|.....+|+|+|.| +++.++|+|++|++
T Consensus 207 --~~aiiDSGTt~~~~p~~~~~~l~~~~~~~----~~~~~------~~~~~C~~~~~~P~i~f~f-gg~~~~l~~~~y~~ 273 (325)
T cd05490 207 --CEAIVDTGTSLITGPVEEVRALQKAIGAV----PLIQG------EYMIDCEKIPTLPVISFSL-GGKVYPLTGEDYIL 273 (325)
T ss_pred --CEEEECCCCccccCCHHHHHHHHHHhCCc----cccCC------CEEecccccccCCCEEEEE-CCEEEEEChHHeEE
Confidence 35999999999999999999999988643 22211 3777888777899999999 88999999999999
Q ss_pred EcC--CCeEEE-EEEcCC---CCCCeeEecccceeeeEEEEECCCCEEEEEe
Q 017894 315 PIR--ASQVCL-AFAGNS---DPSDVGIFGNVQQHTLEVVYDVAHGQVGFAA 360 (364)
Q Consensus 315 ~~~--~~~~C~-~~~~~~---~~~~~~ilG~~fl~~~y~vfD~~~~rigfa~ 360 (364)
+.. ....|+ +|+..+ .....||||..|||++|+|||++++|||||+
T Consensus 274 ~~~~~~~~~C~~~~~~~~~~~~~~~~~ilGd~flr~~y~vfD~~~~~IGfA~ 325 (325)
T cd05490 274 KVSQRGTTICLSGFMGLDIPPPAGPLWILGDVFIGRYYTVFDRDNDRVGFAK 325 (325)
T ss_pred eccCCCCCEEeeEEEECCCCCCCCceEEEChHhheeeEEEEEcCCcEeeccC
Confidence 743 246898 566532 2345799999999999999999999999996
No 6
>cd05487 renin_like Renin stimulates production of angiotensin and thus affects blood pressure. Renin, also known as angiotensinogenase, is a circulating enzyme that participates in the renin-angiotensin system that mediates extracellular volume, arterial vasoconstriction, and consequently mean arterial blood pressure. The enzyme is secreted by the kidneys from specialized juxtaglomerular cells in response to decreases in glomerular filtration rate (a consequence of low blood volume), diminished filtered sodium chloride and sympathetic nervous system innervation. The enzyme circulates in the blood stream and hydrolyzes angiotensinogen secreted from the liver into the peptide angiotensin I. Angiotensin I is further cleaved in the lungs by endothelial bound angiotensin converting enzyme (ACE) into angiotensin II, the final active peptide. Renin is a member of the aspartic protease family. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate r
Probab=100.00 E-value=3.5e-54 Score=400.11 Aligned_cols=297 Identities=23% Similarity=0.404 Sum_probs=246.5
Q ss_pred ccCCccEEEEEEeCCCCcEEEEEEEcCCcceeEeCCCccc---CcCCCCCCCCCCCCCCcccccCCCCCccCCcccCCCC
Q 017894 16 VVGSGNYIVTVGIGTPKRKFSLIFDTGSDLTWTQCKPCVG---FCYQQKEKIFDPKRSKSYRNVSCSSTVCSSLESATGN 92 (364)
Q Consensus 16 ~~~~~~y~~~i~iGtP~q~~~~~~DTgS~~~wv~~~~c~~---~c~~~~~~~y~~s~Sst~~~~~~~~~~c~~~~~~~~~ 92 (364)
++.+..|+++|.||||+|+++|++||||+++||++..|.. .|..+ ..|+|++|+|++..
T Consensus 3 ~~~~~~y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~c~~~--~~y~~~~SsT~~~~---------------- 64 (326)
T cd05487 3 NYLDTQYYGEIGIGTPPQTFKVVFDTGSSNLWVPSSKCSPLYTACVTH--NLYDASDSSTYKEN---------------- 64 (326)
T ss_pred ccCCCeEEEEEEECCCCcEEEEEEeCCccceEEccCCCcCcchhhccc--CcCCCCCCeeeeEC----------------
Confidence 6788999999999999999999999999999999988853 57655 78999999999975
Q ss_pred CCCCCCCCcceeeEEeCCCCceEEEEEEEEEEecCCCccCCeEEeeccCCCC---CCCCcCeEEecCCCCCh------hH
Q 017894 93 IPGCASNKTCVYGIQYGDSSFSVGFFAKETLTLTSKDVFPKFLLGCGQNNRG---LFRGAAGLLGLGRNKIS------LV 163 (364)
Q Consensus 93 ~~~c~~~~~~~~~~~y~~g~~~~G~~~~D~v~i~~~~~~~~~~fg~a~~~~~---~~~~~~GilGLg~~~~s------~~ 163 (364)
.+.+.+.|++|+ +.|.+++|+|++++ ..+ ++.||++.+... ....++||||||++..+ ++
T Consensus 65 --------~~~~~~~Yg~g~-~~G~~~~D~v~~g~-~~~-~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~ 133 (326)
T cd05487 65 --------GTEFTIHYASGT-VKGFLSQDIVTVGG-IPV-TQMFGEVTALPAIPFMLAKFDGVLGMGYPKQAIGGVTPVF 133 (326)
T ss_pred --------CEEEEEEeCCce-EEEEEeeeEEEECC-EEe-eEEEEEEEeccCCccceeecceEEecCChhhcccCCCCHH
Confidence 578999999997 89999999999998 566 478999987643 12368999999987644 23
Q ss_pred HHhhhhc---CCcEEEeCCCCC--CCceeEEeCCCCC----CCceEeecccCCCCCcceEEEeeEEEECCEEeeeccccC
Q 017894 164 YQTASKY---KKRFSYCLPSSS--SSTGHLTFGPGIK----KSVKFTPLSSAFQGSSFYGLDMTGISVGGEKLPIATTVF 234 (364)
Q Consensus 164 ~q~~~~~---~~~fsl~l~~~~--~~~g~l~fGg~d~----~~l~~~p~~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~ 234 (364)
.++..+. +++||+||.+.+ ...|.|+|||+|+ +++.|+|+.. ..+|+|++++++|+++.+.....
T Consensus 134 ~~L~~qg~i~~~~FS~~L~~~~~~~~~G~l~fGg~d~~~y~g~l~~~~~~~----~~~w~v~l~~i~vg~~~~~~~~~-- 207 (326)
T cd05487 134 DNIMSQGVLKEDVFSVYYSRDSSHSLGGEIVLGGSDPQHYQGDFHYINTSK----TGFWQIQMKGVSVGSSTLLCEDG-- 207 (326)
T ss_pred HHHHhcCCCCCCEEEEEEeCCCCCCCCcEEEECCcChhhccCceEEEECCc----CceEEEEecEEEECCEEEecCCC--
Confidence 3333331 799999998754 3479999999984 7899999976 67999999999999988754322
Q ss_pred CCCCEEEecCCcceecChhHHHHHHHHHHHHHhcCCCCCCccccccceeccCCccccCCeEEEEEcCCcEEEeCCCceEE
Q 017894 235 STPGTIIDSGTVITRLPPHAYTVLKTAFRQLMSKYPTAPAVSILDTCYDFSEHETITIPKISFFFNGGVEVDVDVTGIMF 314 (364)
Q Consensus 235 ~~~~aiiDtgt~~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~P~i~~~~~g~~~~~i~~~~~~~ 314 (364)
..++|||||++++||.++++++++++++. .. . .+|.++|+....+|+|+|+| ++.+++|++++|++
T Consensus 208 --~~aiiDSGts~~~lP~~~~~~l~~~~~~~---~~--~------~~y~~~C~~~~~~P~i~f~f-gg~~~~v~~~~yi~ 273 (326)
T cd05487 208 --CTAVVDTGASFISGPTSSISKLMEALGAK---ER--L------GDYVVKCNEVPTLPDISFHL-GGKEYTLSSSDYVL 273 (326)
T ss_pred --CEEEECCCccchhCcHHHHHHHHHHhCCc---cc--C------CCEEEeccccCCCCCEEEEE-CCEEEEeCHHHhEE
Confidence 35999999999999999999999998654 11 1 24788888878899999999 88999999999999
Q ss_pred EcC--CCeEEE-EEEcCC---CCCCeeEecccceeeeEEEEECCCCEEEEEeC
Q 017894 315 PIR--ASQVCL-AFAGNS---DPSDVGIFGNVQQHTLEVVYDVAHGQVGFAAG 361 (364)
Q Consensus 315 ~~~--~~~~C~-~~~~~~---~~~~~~ilG~~fl~~~y~vfD~~~~rigfa~~ 361 (364)
+.. .+..|+ +|...+ ...+.||||.+|||++|+|||++++|||||+|
T Consensus 274 ~~~~~~~~~C~~~~~~~~~~~~~~~~~ilG~~flr~~y~vfD~~~~~IGfA~a 326 (326)
T cd05487 274 QDSDFSDKLCTVAFHAMDIPPPTGPLWVLGATFIRKFYTEFDRQNNRIGFALA 326 (326)
T ss_pred eccCCCCCEEEEEEEeCCCCCCCCCeEEEehHHhhccEEEEeCCCCEEeeeeC
Confidence 853 257897 676542 22357999999999999999999999999986
No 7
>cd05488 Proteinase_A_fungi Fungal Proteinase A , aspartic proteinase superfamily. Fungal Proteinase A, a proteolytic enzyme distributed among a variety of organisms, is a member of the aspartic proteinase superfamily. In Saccharomyces cerevisiae, targeted to the vacuole as a zymogen, activation of proteinases A at acidic pH can occur by two different pathways: a one-step process to release mature proteinase A, involving the intervention of proteinase B, or a step-wise pathway via the auto-activation product known as pseudo-proteinase A. Once active, S. cerevisiae proteinase A is essential to the activities of other yeast vacuolar hydrolases, including proteinase B and carboxypeptidase Y. The mature enzyme is bilobal, with each lobe providing one of the two catalytically essential aspartic acid residues in the active site. The crystal structure of free proteinase A shows that flap loop is atypically pointing directly into the S(1) pocket of the enzyme. Proteinase A preferentially hydro
Probab=100.00 E-value=5.9e-54 Score=397.63 Aligned_cols=299 Identities=26% Similarity=0.485 Sum_probs=249.5
Q ss_pred cccccCCccCCccEEEEEEeCCCCcEEEEEEEcCCcceeEeCCCcc-cCcCCCCCCCCCCCCCCcccccCCCCCccCCcc
Q 017894 9 LPAIHGSVVGSGNYIVTVGIGTPKRKFSLIFDTGSDLTWTQCKPCV-GFCYQQKEKIFDPKRSKSYRNVSCSSTVCSSLE 87 (364)
Q Consensus 9 ~p~~~~~~~~~~~y~~~i~iGtP~q~~~~~~DTgS~~~wv~~~~c~-~~c~~~~~~~y~~s~Sst~~~~~~~~~~c~~~~ 87 (364)
+||+ ++.+..|+++|.||||+|++.|++||||+++||++..|. ..|..+ +.|++++|+|++..
T Consensus 1 ~~l~---n~~~~~Y~~~i~iGtp~q~~~v~~DTGSs~~wv~~~~C~~~~C~~~--~~y~~~~Sst~~~~----------- 64 (320)
T cd05488 1 VPLT---NYLNAQYFTDITLGTPPQKFKVILDTGSSNLWVPSVKCGSIACFLH--SKYDSSASSTYKAN----------- 64 (320)
T ss_pred Cccc---ccCCCEEEEEEEECCCCcEEEEEEecCCcceEEEcCCCCCcccCCc--ceECCCCCcceeeC-----------
Confidence 4676 778899999999999999999999999999999999994 468765 79999999998874
Q ss_pred cCCCCCCCCCCCCcceeeEEeCCCCceEEEEEEEEEEecCCCccCCeEEeeccCCCCC---CCCcCeEEecCCCCChhH-
Q 017894 88 SATGNIPGCASNKTCVYGIQYGDSSFSVGFFAKETLTLTSKDVFPKFLLGCGQNNRGL---FRGAAGLLGLGRNKISLV- 163 (364)
Q Consensus 88 ~~~~~~~~c~~~~~~~~~~~y~~g~~~~G~~~~D~v~i~~~~~~~~~~fg~a~~~~~~---~~~~~GilGLg~~~~s~~- 163 (364)
.+.+.+.|++|+ ++|.+++|++++++ ..++++.|+++....+. +...+||||||+...+..
T Consensus 65 -------------~~~~~~~y~~g~-~~G~~~~D~v~ig~-~~~~~~~f~~a~~~~g~~~~~~~~dGilGLg~~~~s~~~ 129 (320)
T cd05488 65 -------------GTEFKIQYGSGS-LEGFVSQDTLSIGD-LTIKKQDFAEATSEPGLAFAFGKFDGILGLAYDTISVNK 129 (320)
T ss_pred -------------CCEEEEEECCce-EEEEEEEeEEEECC-EEECCEEEEEEecCCCcceeeeeeceEEecCCccccccC
Confidence 578999999997 89999999999999 68999999999877543 236799999999875432
Q ss_pred -----HHhhhhc---CCcEEEeCCCCCCCceeEEeCCCCC----CCceEeecccCCCCCcceEEEeeEEEECCEEeeecc
Q 017894 164 -----YQTASKY---KKRFSYCLPSSSSSTGHLTFGPGIK----KSVKFTPLSSAFQGSSFYGLDMTGISVGGEKLPIAT 231 (364)
Q Consensus 164 -----~q~~~~~---~~~fsl~l~~~~~~~g~l~fGg~d~----~~l~~~p~~~~~~~~~~w~v~l~~i~v~~~~~~~~~ 231 (364)
.++..+. ++.||+||.+....+|.|+|||+|+ +++.|+|+.. ..+|.|.+++|+|+++.+....
T Consensus 130 ~~~~~~~l~~qg~i~~~~FS~~L~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~----~~~w~v~l~~i~vg~~~~~~~~ 205 (320)
T cd05488 130 IVPPFYNMINQGLLDEPVFSFYLGSSEEDGGEATFGGIDESRFTGKITWLPVRR----KAYWEVELEKIGLGDEELELEN 205 (320)
T ss_pred CCCHHHHHHhcCCCCCCEEEEEecCCCCCCcEEEECCcCHHHcCCceEEEeCCc----CcEEEEEeCeEEECCEEeccCC
Confidence 2333221 6899999998655689999999984 6999999987 6799999999999998776443
Q ss_pred ccCCCCCEEEecCCcceecChhHHHHHHHHHHHHHhcCCCCCCccccccceeccCCccccCCeEEEEEcCCcEEEeCCCc
Q 017894 232 TVFSTPGTIIDSGTVITRLPPHAYTVLKTAFRQLMSKYPTAPAVSILDTCYDFSEHETITIPKISFFFNGGVEVDVDVTG 311 (364)
Q Consensus 232 ~~~~~~~aiiDtgt~~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~P~i~~~~~g~~~~~i~~~~ 311 (364)
..++|||||++++||++++++|.+++++. .. ...+|.++|.....+|.|+|.| +++++.|+|++
T Consensus 206 -----~~~ivDSGtt~~~lp~~~~~~l~~~~~~~---~~-------~~~~~~~~C~~~~~~P~i~f~f-~g~~~~i~~~~ 269 (320)
T cd05488 206 -----TGAAIDTGTSLIALPSDLAEMLNAEIGAK---KS-------WNGQYTVDCSKVDSLPDLTFNF-DGYNFTLGPFD 269 (320)
T ss_pred -----CeEEEcCCcccccCCHHHHHHHHHHhCCc---cc-------cCCcEEeeccccccCCCEEEEE-CCEEEEECHHH
Confidence 34999999999999999999999888644 11 1235778888777899999999 78999999999
Q ss_pred eEEEcCCCeEEE-EEEcCC---CCCCeeEecccceeeeEEEEECCCCEEEEEe
Q 017894 312 IMFPIRASQVCL-AFAGNS---DPSDVGIFGNVQQHTLEVVYDVAHGQVGFAA 360 (364)
Q Consensus 312 ~~~~~~~~~~C~-~~~~~~---~~~~~~ilG~~fl~~~y~vfD~~~~rigfa~ 360 (364)
|+++. ...|+ .+.... .....||||.+|||++|++||++++|||||+
T Consensus 270 y~~~~--~g~C~~~~~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~~iG~a~ 320 (320)
T cd05488 270 YTLEV--SGSCISAFTGMDFPEPVGPLAIVGDAFLRKYYSVYDLGNNAVGLAK 320 (320)
T ss_pred heecC--CCeEEEEEEECcCCCCCCCeEEEchHHhhheEEEEeCCCCEEeecC
Confidence 99864 45798 454432 1234799999999999999999999999996
No 8
>cd05477 gastricsin Gastricsins, asparate proteases produced in gastric mucosa. Gastricsin is also called pepsinogen C. Gastricsins are produced in gastric mucosa of mammals. It is synthesized by the chief cells in the stomach as an inactive zymogen. It is self-converted to a mature enzyme under acidic conditions. Human gastricsin is distributed throughout all parts of the stomach. Gastricsin is synthesized as an inactive progastricsin that has an approximately 40 residue prosequence. It is self-converting to a mature enzyme being triggered by a drop in pH from neutrality to acidic conditions. Like other aspartic proteases, gastricsin are characterized by two catalytic aspartic residues at the active site, and display optimal activity at acidic pH. Mature enzyme has a pseudo-2-fold symmetry that passes through the active site between the catalytic aspartate residues. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic aspartate residue, with an exten
Probab=100.00 E-value=1.3e-53 Score=395.20 Aligned_cols=295 Identities=23% Similarity=0.441 Sum_probs=248.3
Q ss_pred CccEEEEEEeCCCCcEEEEEEEcCCcceeEeCCCcc-cCcCCCCCCCCCCCCCCcccccCCCCCccCCcccCCCCCCCCC
Q 017894 19 SGNYIVTVGIGTPKRKFSLIFDTGSDLTWTQCKPCV-GFCYQQKEKIFDPKRSKSYRNVSCSSTVCSSLESATGNIPGCA 97 (364)
Q Consensus 19 ~~~y~~~i~iGtP~q~~~~~~DTgS~~~wv~~~~c~-~~c~~~~~~~y~~s~Sst~~~~~~~~~~c~~~~~~~~~~~~c~ 97 (364)
+..|+++|.||||+|++.|+|||||+++||++..|. ..|..+ +.|||++|+|++..
T Consensus 1 ~~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~C~~~~C~~~--~~f~~~~SsT~~~~--------------------- 57 (318)
T cd05477 1 DMSYYGEISIGTPPQNFLVLFDTGSSNLWVPSVLCQSQACTNH--TKFNPSQSSTYSTN--------------------- 57 (318)
T ss_pred CcEEEEEEEECCCCcEEEEEEeCCCccEEEccCCCCCcccccc--CCCCcccCCCceEC---------------------
Confidence 467999999999999999999999999999999994 357654 79999999999875
Q ss_pred CCCcceeeEEeCCCCceEEEEEEEEEEecCCCccCCeEEeeccCCCCC-C--CCcCeEEecCCCC------ChhHHHhhh
Q 017894 98 SNKTCVYGIQYGDSSFSVGFFAKETLTLTSKDVFPKFLLGCGQNNRGL-F--RGAAGLLGLGRNK------ISLVYQTAS 168 (364)
Q Consensus 98 ~~~~~~~~~~y~~g~~~~G~~~~D~v~i~~~~~~~~~~fg~a~~~~~~-~--~~~~GilGLg~~~------~s~~~q~~~ 168 (364)
.+.+.+.|++|+ +.|.+++|+|++++ ..++++.||++....+. + ...+||||||++. .++++|+..
T Consensus 58 ---~~~~~~~Yg~Gs-~~G~~~~D~i~~g~-~~i~~~~Fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~L~~ 132 (318)
T cd05477 58 ---GETFSLQYGSGS-LTGIFGYDTVTVQG-IIITNQEFGLSETEPGTNFVYAQFDGILGLAYPSISAGGATTVMQGMMQ 132 (318)
T ss_pred ---CcEEEEEECCcE-EEEEEEeeEEEECC-EEEcCEEEEEEEecccccccccceeeEeecCcccccccCCCCHHHHHHh
Confidence 578999999997 89999999999999 69999999999987542 2 3679999999863 457778776
Q ss_pred hc---CCcEEEeCCCCC-CCceeEEeCCCCC----CCceEeecccCCCCCcceEEEeeEEEECCEEeeeccccCCCCCEE
Q 017894 169 KY---KKRFSYCLPSSS-SSTGHLTFGPGIK----KSVKFTPLSSAFQGSSFYGLDMTGISVGGEKLPIATTVFSTPGTI 240 (364)
Q Consensus 169 ~~---~~~fsl~l~~~~-~~~g~l~fGg~d~----~~l~~~p~~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~~~ai 240 (364)
+. +++||+||++.. ..+|.|+||++|+ +++.|+|+.. ..+|.|++.+++|+++++...... ..++
T Consensus 133 ~g~i~~~~FS~~L~~~~~~~~g~l~fGg~d~~~~~g~l~~~pv~~----~~~w~v~l~~i~v~g~~~~~~~~~---~~~i 205 (318)
T cd05477 133 QNLLQAPIFSFYLSGQQGQQGGELVFGGVDNNLYTGQIYWTPVTS----ETYWQIGIQGFQINGQATGWCSQG---CQAI 205 (318)
T ss_pred cCCcCCCEEEEEEcCCCCCCCCEEEEcccCHHHcCCceEEEecCC----ceEEEEEeeEEEECCEEecccCCC---ceee
Confidence 63 699999998753 3479999999983 6899999977 689999999999999987533222 3599
Q ss_pred EecCCcceecChhHHHHHHHHHHHHHhcCCCCCCccccccceeccCCccccCCeEEEEEcCCcEEEeCCCceEEEcCCCe
Q 017894 241 IDSGTVITRLPPHAYTVLKTAFRQLMSKYPTAPAVSILDTCYDFSEHETITIPKISFFFNGGVEVDVDVTGIMFPIRASQ 320 (364)
Q Consensus 241 iDtgt~~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~P~i~~~~~g~~~~~i~~~~~~~~~~~~~ 320 (364)
|||||++++||++++++|+++++... .. . .+|.++|.....+|+|+|.| +++++.|++++|+... ..
T Consensus 206 iDSGtt~~~lP~~~~~~l~~~~~~~~---~~-~------~~~~~~C~~~~~~p~l~~~f-~g~~~~v~~~~y~~~~--~~ 272 (318)
T cd05477 206 VDTGTSLLTAPQQVMSTLMQSIGAQQ---DQ-Y------GQYVVNCNNIQNLPTLTFTI-NGVSFPLPPSAYILQN--NG 272 (318)
T ss_pred ECCCCccEECCHHHHHHHHHHhCCcc---cc-C------CCEEEeCCccccCCcEEEEE-CCEEEEECHHHeEecC--CC
Confidence 99999999999999999999987652 11 1 25888998888899999999 7899999999999875 56
Q ss_pred EEE-EEEcCC----CCCCeeEecccceeeeEEEEECCCCEEEEEeC
Q 017894 321 VCL-AFAGNS----DPSDVGIFGNVQQHTLEVVYDVAHGQVGFAAG 361 (364)
Q Consensus 321 ~C~-~~~~~~----~~~~~~ilG~~fl~~~y~vfD~~~~rigfa~~ 361 (364)
.|+ ++.... .....+|||.+|||++|++||++++|||||+|
T Consensus 273 ~C~~~i~~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~~ig~a~~ 318 (318)
T cd05477 273 YCTVGIEPTYLPSQNGQPLWILGDVFLRQYYSVYDLGNNQVGFATA 318 (318)
T ss_pred eEEEEEEecccCCCCCCceEEEcHHHhhheEEEEeCCCCEEeeeeC
Confidence 897 776431 12346999999999999999999999999986
No 9
>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite. The family contains a group of aspartic proteinases homologous to plasmepsin 5. Plasmepsins are a class of at least 10 enzymes produced by the plasmodium parasite. Through their haemoglobin-degrading activity, they are an important cause of symptoms in malaria sufferers. This family of enzymes is a potential target for anti-malarial drugs. Plasmepsins are aspartic acid proteases, which means their active site contains two aspartic acid residues. These two aspartic acid residue act respectively as proton donor and proton acceptor, catalyzing the hydrolysis of peptide bond in proteins. Aspartic proteinases are composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalytic Asp residues are contained in an Asp-Thr-Gly-Ser/thr motif in both N- and C-terminal l
Probab=100.00 E-value=1.3e-53 Score=396.22 Aligned_cols=292 Identities=26% Similarity=0.493 Sum_probs=239.6
Q ss_pred ccEEEEEEeCCCCcEEEEEEEcCCcceeEeCCCcccCcCCCCCCCCCCCCCCcccccCCCCCccCCcccCCCCCCCCCCC
Q 017894 20 GNYIVTVGIGTPKRKFSLIFDTGSDLTWTQCKPCVGFCYQQKEKIFDPKRSKSYRNVSCSSTVCSSLESATGNIPGCASN 99 (364)
Q Consensus 20 ~~y~~~i~iGtP~q~~~~~~DTgS~~~wv~~~~c~~~c~~~~~~~y~~s~Sst~~~~~~~~~~c~~~~~~~~~~~~c~~~ 99 (364)
++|+++|.||||+|++.|+|||||+++||+|..|. .|..+..+.|+|++|+|++.++|++..|.. ...|.+
T Consensus 2 ~~Y~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~~C~-~c~~~~~~~y~~~~Sst~~~~~C~~~~c~~-------~~~~~~- 72 (326)
T cd06096 2 AYYFIDIFIGNPPQKQSLILDTGSSSLSFPCSQCK-NCGIHMEPPYNLNNSITSSILYCDCNKCCY-------CLSCLN- 72 (326)
T ss_pred ceEEEEEEecCCCeEEEEEEeCCCCceEEecCCCC-CcCCCCCCCcCcccccccccccCCCccccc-------cCcCCC-
Confidence 58999999999999999999999999999999994 487766789999999999999999999942 123533
Q ss_pred CcceeeEEeCCCCceEEEEEEEEEEecCCCccC-------CeEEeeccCCCCCC--CCcCeEEecCCCCCh-h-------
Q 017894 100 KTCVYGIQYGDSSFSVGFFAKETLTLTSKDVFP-------KFLLGCGQNNRGLF--RGAAGLLGLGRNKIS-L------- 162 (364)
Q Consensus 100 ~~~~~~~~y~~g~~~~G~~~~D~v~i~~~~~~~-------~~~fg~a~~~~~~~--~~~~GilGLg~~~~s-~------- 162 (364)
+.|.+.+.|++|+.+.|.+++|+|+|++ ..++ ++.|||+....+.+ ...+||||||+...+ +
T Consensus 73 ~~~~~~i~Y~~gs~~~G~~~~D~v~lg~-~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~GilGLg~~~~~~~~~~~~~l 151 (326)
T cd06096 73 NKCEYSISYSEGSSISGFYFSDFVSFES-YLNSNSEKESFKKIFGCHTHETNLFLTQQATGILGLSLTKNNGLPTPIILL 151 (326)
T ss_pred CcCcEEEEECCCCceeeEEEEEEEEecc-CCCCccccccccEEeccCccccCcccccccceEEEccCCcccccCchhHHH
Confidence 5799999999998789999999999998 3542 57899998876544 378999999998643 1
Q ss_pred HHHhhhh-cCCcEEEeCCCCCCCceeEEeCCCCC--------------CCceEeecccCCCCCcceEEEeeEEEECCEEe
Q 017894 163 VYQTASK-YKKRFSYCLPSSSSSTGHLTFGPGIK--------------KSVKFTPLSSAFQGSSFYGLDMTGISVGGEKL 227 (364)
Q Consensus 163 ~~q~~~~-~~~~fsl~l~~~~~~~g~l~fGg~d~--------------~~l~~~p~~~~~~~~~~w~v~l~~i~v~~~~~ 227 (364)
.+|.... ..++||+||++. .|.|+||++|+ +++.|+|+.. ..+|.|.+++|+|+++..
T Consensus 152 ~~~~~~~~~~~~FS~~l~~~---~G~l~~Gg~d~~~~~~~~~~~~~~~~~~~~~p~~~----~~~y~v~l~~i~vg~~~~ 224 (326)
T cd06096 152 FTKRPKLKKDKIFSICLSED---GGELTIGGYDKDYTVRNSSIGNNKVSKIVWTPITR----KYYYYVKLEGLSVYGTTS 224 (326)
T ss_pred HHhcccccCCceEEEEEcCC---CeEEEECccChhhhcccccccccccCCceEEeccC----CceEEEEEEEEEEccccc
Confidence 1222222 148999999864 79999999883 5789999987 579999999999998861
Q ss_pred -eeccccCCCCCEEEecCCcceecChhHHHHHHHHHHHHHhcCCCCCCccccccceeccCCccccCCeEEEEEcCCcEEE
Q 017894 228 -PIATTVFSTPGTIIDSGTVITRLPPHAYTVLKTAFRQLMSKYPTAPAVSILDTCYDFSEHETITIPKISFFFNGGVEVD 306 (364)
Q Consensus 228 -~~~~~~~~~~~aiiDtgt~~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~P~i~~~~~g~~~~~ 306 (364)
...... ..++|||||++++||++++++|.+++ |+|+|.|.++++++
T Consensus 225 ~~~~~~~---~~aivDSGTs~~~lp~~~~~~l~~~~------------------------------P~i~~~f~~g~~~~ 271 (326)
T cd06096 225 NSGNTKG---LGMLVDSGSTLSHFPEDLYNKINNFF------------------------------PTITIIFENNLKID 271 (326)
T ss_pred ceecccC---CCEEEeCCCCcccCCHHHHHHHHhhc------------------------------CcEEEEEcCCcEEE
Confidence 111111 46999999999999999999987766 78999995589999
Q ss_pred eCCCceEEEcCCCeEEEEEEcCCCCCCeeEecccceeeeEEEEECCCCEEEEEeCCCC
Q 017894 307 VDVTGIMFPIRASQVCLAFAGNSDPSDVGIFGNVQQHTLEVVYDVAHGQVGFAAGGCS 364 (364)
Q Consensus 307 i~~~~~~~~~~~~~~C~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~rigfa~~~c~ 364 (364)
++|++|++.......|..+... .+.+|||.+|||++|+|||++++|||||+++|+
T Consensus 272 i~p~~y~~~~~~~~c~~~~~~~---~~~~ILG~~flr~~y~vFD~~~~riGfa~~~C~ 326 (326)
T cd06096 272 WKPSSYLYKKESFWCKGGEKSV---SNKPILGASFFKNKQIIFDLDNNRIGFVESNCP 326 (326)
T ss_pred ECHHHhccccCCceEEEEEecC---CCceEEChHHhcCcEEEEECcCCEEeeEcCCCC
Confidence 9999999986544444555433 257999999999999999999999999999995
No 10
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins. Phytepsin, a plant homolog of mammalian lysosomal pepsins, resides in grains, roots, stems, leaves and flowers. Phytepsin may participate in metabolic turnover and in protein processing events. In addition, it highly expressed in several plant tissues undergoing apoptosis. Phytepsin contains an internal region consisting of about 100 residues not present in animal or microbial pepsins. This region is thus called a plant specific insert. The insert is highly similar to saponins, which are lysosomal sphingolipid-activating proteins in mammalian cells. The saponin-like domain may have a role in the vacuolar targeting of phytepsin. Phytepsin, as its animal counterparts, possesses a topology typical of all aspartic proteases. They are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe has probably evolved fro
Probab=100.00 E-value=8e-54 Score=396.05 Aligned_cols=291 Identities=26% Similarity=0.469 Sum_probs=239.7
Q ss_pred cccccCCccCCccEEEEEEeCCCCcEEEEEEEcCCcceeEeCCCcc--cCcCCCCCCCCCCCCCCcccccCCCCCccCCc
Q 017894 9 LPAIHGSVVGSGNYIVTVGIGTPKRKFSLIFDTGSDLTWTQCKPCV--GFCYQQKEKIFDPKRSKSYRNVSCSSTVCSSL 86 (364)
Q Consensus 9 ~p~~~~~~~~~~~y~~~i~iGtP~q~~~~~~DTgS~~~wv~~~~c~--~~c~~~~~~~y~~s~Sst~~~~~~~~~~c~~~ 86 (364)
+||+ ++.+..|+++|.||||+|++.|+|||||+++||++..|. ..|..+ +.|+|++|+|++..
T Consensus 1 ~~l~---n~~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~~C~~~~~C~~~--~~y~~~~SsT~~~~---------- 65 (317)
T cd06098 1 VALK---NYLDAQYFGEIGIGTPPQKFTVIFDTGSSNLWVPSSKCYFSIACYFH--SKYKSSKSSTYKKN---------- 65 (317)
T ss_pred Cccc---ccCCCEEEEEEEECCCCeEEEEEECCCccceEEecCCCCCCcccccc--CcCCcccCCCcccC----------
Confidence 4665 888999999999999999999999999999999999994 468765 78999999999875
Q ss_pred ccCCCCCCCCCCCCcceeeEEeCCCCceEEEEEEEEEEecCCCccCCeEEeeccCCCC-CC--CCcCeEEecCCCCCh--
Q 017894 87 ESATGNIPGCASNKTCVYGIQYGDSSFSVGFFAKETLTLTSKDVFPKFLLGCGQNNRG-LF--RGAAGLLGLGRNKIS-- 161 (364)
Q Consensus 87 ~~~~~~~~~c~~~~~~~~~~~y~~g~~~~G~~~~D~v~i~~~~~~~~~~fg~a~~~~~-~~--~~~~GilGLg~~~~s-- 161 (364)
...+.+.|++|. +.|.+++|+|+|++ ..++++.||++....+ .+ ..++||||||++..+
T Consensus 66 --------------~~~~~i~Yg~G~-~~G~~~~D~v~ig~-~~v~~~~f~~~~~~~~~~~~~~~~dGilGLg~~~~s~~ 129 (317)
T cd06098 66 --------------GTSASIQYGTGS-ISGFFSQDSVTVGD-LVVKNQVFIEATKEPGLTFLLAKFDGILGLGFQEISVG 129 (317)
T ss_pred --------------CCEEEEEcCCce-EEEEEEeeEEEECC-EEECCEEEEEEEecCCccccccccceeccccccchhhc
Confidence 468899999997 89999999999999 6999999999987644 22 368999999997654
Q ss_pred ----hHHHhhhhc---CCcEEEeCCCCC--CCceeEEeCCCCC----CCceEeecccCCCCCcceEEEeeEEEECCEEee
Q 017894 162 ----LVYQTASKY---KKRFSYCLPSSS--SSTGHLTFGPGIK----KSVKFTPLSSAFQGSSFYGLDMTGISVGGEKLP 228 (364)
Q Consensus 162 ----~~~q~~~~~---~~~fsl~l~~~~--~~~g~l~fGg~d~----~~l~~~p~~~~~~~~~~w~v~l~~i~v~~~~~~ 228 (364)
+..++..+. +++||+||.+.. ...|.|+|||+|+ +++.|+|+.. ..+|.|++++|+|+++.+.
T Consensus 130 ~~~~~~~~l~~qg~i~~~~FS~~L~~~~~~~~~G~l~fGg~d~~~~~g~l~~~pv~~----~~~w~v~l~~i~v~g~~~~ 205 (317)
T cd06098 130 KAVPVWYNMVEQGLVKEPVFSFWLNRNPDEEEGGELVFGGVDPKHFKGEHTYVPVTR----KGYWQFEMGDVLIGGKSTG 205 (317)
T ss_pred CCCCHHHHHHhcCCCCCCEEEEEEecCCCCCCCcEEEECccChhhcccceEEEecCc----CcEEEEEeCeEEECCEEee
Confidence 233444331 689999998643 2489999999984 6999999976 6799999999999999875
Q ss_pred eccccCCCCCEEEecCCcceecChhHHHHHHHHHHHHHhcCCCCCCccccccceeccCCccccCCeEEEEEcCCcEEEeC
Q 017894 229 IATTVFSTPGTIIDSGTVITRLPPHAYTVLKTAFRQLMSKYPTAPAVSILDTCYDFSEHETITIPKISFFFNGGVEVDVD 308 (364)
Q Consensus 229 ~~~~~~~~~~aiiDtgt~~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~P~i~~~~~g~~~~~i~ 308 (364)
..... ..++|||||++++||.++++++. +.++|.....+|+|+|+| ++++++|+
T Consensus 206 ~~~~~---~~aivDTGTs~~~lP~~~~~~i~----------------------~~~~C~~~~~~P~i~f~f-~g~~~~l~ 259 (317)
T cd06098 206 FCAGG---CAAIADSGTSLLAGPTTIVTQIN----------------------SAVDCNSLSSMPNVSFTI-GGKTFELT 259 (317)
T ss_pred ecCCC---cEEEEecCCcceeCCHHHHHhhh----------------------ccCCccccccCCcEEEEE-CCEEEEEC
Confidence 43322 35999999999999998776653 233455556799999999 78999999
Q ss_pred CCceEEEcC--CCeEEE-EEEcCC---CCCCeeEecccceeeeEEEEECCCCEEEEEe
Q 017894 309 VTGIMFPIR--ASQVCL-AFAGNS---DPSDVGIFGNVQQHTLEVVYDVAHGQVGFAA 360 (364)
Q Consensus 309 ~~~~~~~~~--~~~~C~-~~~~~~---~~~~~~ilG~~fl~~~y~vfD~~~~rigfa~ 360 (364)
|++|+++.. ....|+ +++..+ .....||||..|||++|+|||++++|||||+
T Consensus 260 ~~~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~~IlGd~Flr~~y~VfD~~~~~iGfA~ 317 (317)
T cd06098 260 PEQYILKVGEGAAAQCISGFTALDVPPPRGPLWILGDVFMGAYHTVFDYGNLRVGFAE 317 (317)
T ss_pred hHHeEEeecCCCCCEEeceEEECCCCCCCCCeEEechHHhcccEEEEeCCCCEEeecC
Confidence 999998743 246898 666432 2345799999999999999999999999996
No 11
>cd05486 Cathespin_E Cathepsin E, non-lysosomal aspartic protease. Cathepsin E is an intracellular, non-lysosomal aspartic protease expressed in a variety of cells and tissues. The protease has proposed physiological roles in antigen presentation by the MHC class II system, in the biogenesis of the vasoconstrictor peptide endothelin, and in neurodegeneration associated with brain ischemia and aging. Cathepsin E is the only A1 aspartic protease that exists as a homodimer with a disulfide bridge linking the two monomers. Like many other aspartic proteases, it is synthesized as a zymogen which is catalytically inactive towards its natural substrates at neutral pH and which auto-activates in an acidic environment. The overall structure follows the general fold of aspartic proteases of the A1 family, it is composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalyt
Probab=100.00 E-value=6.5e-54 Score=396.82 Aligned_cols=291 Identities=22% Similarity=0.413 Sum_probs=242.6
Q ss_pred EEEEEEeCCCCcEEEEEEEcCCcceeEeCCCcc-cCcCCCCCCCCCCCCCCcccccCCCCCccCCcccCCCCCCCCCCCC
Q 017894 22 YIVTVGIGTPKRKFSLIFDTGSDLTWTQCKPCV-GFCYQQKEKIFDPKRSKSYRNVSCSSTVCSSLESATGNIPGCASNK 100 (364)
Q Consensus 22 y~~~i~iGtP~q~~~~~~DTgS~~~wv~~~~c~-~~c~~~~~~~y~~s~Sst~~~~~~~~~~c~~~~~~~~~~~~c~~~~ 100 (364)
|+++|+||||+|+++|+|||||+++||++..|. ..|..+ +.|+|++|+|++..
T Consensus 1 Y~~~i~iGtP~Q~~~v~~DTGSs~~Wv~s~~C~~~~C~~~--~~y~~~~SsT~~~~------------------------ 54 (316)
T cd05486 1 YFGQISIGTPPQNFTVIFDTGSSNLWVPSIYCTSQACTKH--NRFQPSESSTYVSN------------------------ 54 (316)
T ss_pred CeEEEEECCCCcEEEEEEcCCCccEEEecCCCCCcccCcc--ceECCCCCcccccC------------------------
Confidence 789999999999999999999999999999994 468765 78999999999885
Q ss_pred cceeeEEeCCCCceEEEEEEEEEEecCCCccCCeEEeeccCCCC-CC--CCcCeEEecCCCCCh------hHHHhhhhc-
Q 017894 101 TCVYGIQYGDSSFSVGFFAKETLTLTSKDVFPKFLLGCGQNNRG-LF--RGAAGLLGLGRNKIS------LVYQTASKY- 170 (364)
Q Consensus 101 ~~~~~~~y~~g~~~~G~~~~D~v~i~~~~~~~~~~fg~a~~~~~-~~--~~~~GilGLg~~~~s------~~~q~~~~~- 170 (364)
.+.+.+.|++|. +.|.+++|+|+|++ ..++++.||++....+ .+ ..++||||||++..+ +.+++..+.
T Consensus 55 ~~~~~i~Yg~g~-~~G~~~~D~v~ig~-~~~~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~p~~~~l~~qg~ 132 (316)
T cd05486 55 GEAFSIQYGTGS-LTGIIGIDQVTVEG-ITVQNQQFAESVSEPGSTFQDSEFDGILGLAYPSLAVDGVTPVFDNMMAQNL 132 (316)
T ss_pred CcEEEEEeCCcE-EEEEeeecEEEECC-EEEcCEEEEEeeccCcccccccccceEeccCchhhccCCCCCHHHHHHhcCC
Confidence 478999999997 89999999999999 7999999999876644 23 368999999997654 345554432
Q ss_pred --CCcEEEeCCCCC--CCceeEEeCCCCC----CCceEeecccCCCCCcceEEEeeEEEECCEEeeeccccCCCCCEEEe
Q 017894 171 --KKRFSYCLPSSS--SSTGHLTFGPGIK----KSVKFTPLSSAFQGSSFYGLDMTGISVGGEKLPIATTVFSTPGTIID 242 (364)
Q Consensus 171 --~~~fsl~l~~~~--~~~g~l~fGg~d~----~~l~~~p~~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~~~aiiD 242 (364)
+++||+||++.. ...|.|+|||+|+ +++.|+|+.. ..+|.|.+++|+|+++.+..... ..++||
T Consensus 133 i~~~~FS~~L~~~~~~~~~g~l~fGg~d~~~~~g~l~~~pi~~----~~~w~v~l~~i~v~g~~~~~~~~----~~aiiD 204 (316)
T cd05486 133 VELPMFSVYMSRNPNSADGGELVFGGFDTSRFSGQLNWVPVTV----QGYWQIQLDNIQVGGTVIFCSDG----CQAIVD 204 (316)
T ss_pred CCCCEEEEEEccCCCCCCCcEEEEcccCHHHcccceEEEECCC----ceEEEEEeeEEEEecceEecCCC----CEEEEC
Confidence 689999998643 2479999999984 6999999977 78999999999999987654332 359999
Q ss_pred cCCcceecChhHHHHHHHHHHHHHhcCCCCCCccccccceeccCCccccCCeEEEEEcCCcEEEeCCCceEEEc--CCCe
Q 017894 243 SGTVITRLPPHAYTVLKTAFRQLMSKYPTAPAVSILDTCYDFSEHETITIPKISFFFNGGVEVDVDVTGIMFPI--RASQ 320 (364)
Q Consensus 243 tgt~~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~P~i~~~~~g~~~~~i~~~~~~~~~--~~~~ 320 (364)
|||++++||++++++|.+++++. ... .+|.++|.....+|+|+|+| ++++++|+|++|++.. ....
T Consensus 205 TGTs~~~lP~~~~~~l~~~~~~~-----~~~------~~~~~~C~~~~~~p~i~f~f-~g~~~~l~~~~y~~~~~~~~~~ 272 (316)
T cd05486 205 TGTSLITGPSGDIKQLQNYIGAT-----ATD------GEYGVDCSTLSLMPSVTFTI-NGIPYSLSPQAYTLEDQSDGGG 272 (316)
T ss_pred CCcchhhcCHHHHHHHHHHhCCc-----ccC------CcEEEeccccccCCCEEEEE-CCEEEEeCHHHeEEecccCCCC
Confidence 99999999999999998877543 111 24778888777899999999 7899999999999874 3457
Q ss_pred EEE-EEEcCC---CCCCeeEecccceeeeEEEEECCCCEEEEEe
Q 017894 321 VCL-AFAGNS---DPSDVGIFGNVQQHTLEVVYDVAHGQVGFAA 360 (364)
Q Consensus 321 ~C~-~~~~~~---~~~~~~ilG~~fl~~~y~vfD~~~~rigfa~ 360 (364)
.|+ +|+... ...+.||||.+|||++|+|||.+++|||||+
T Consensus 273 ~C~~~~~~~~~~~~~~~~~ILGd~flr~~y~vfD~~~~~IGfA~ 316 (316)
T cd05486 273 YCSSGFQGLDIPPPAGPLWILGDVFIRQYYSVFDRGNNRVGFAP 316 (316)
T ss_pred EEeeEEEECCCCCCCCCeEEEchHHhcceEEEEeCCCCEeeccC
Confidence 898 666542 2345799999999999999999999999996
No 12
>KOG1339 consensus Aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.6e-53 Score=400.63 Aligned_cols=339 Identities=39% Similarity=0.733 Sum_probs=277.3
Q ss_pred CCccCCccEEEEEEeCCCCcEEEEEEEcCCcceeEeCCCcccCcCCCCCCCCCCCCCCcccccCCCCCccCCcccCCCCC
Q 017894 14 GSVVGSGNYIVTVGIGTPKRKFSLIFDTGSDLTWTQCKPCVGFCYQQKEKIFDPKRSKSYRNVSCSSTVCSSLESATGNI 93 (364)
Q Consensus 14 ~~~~~~~~y~~~i~iGtP~q~~~~~~DTgS~~~wv~~~~c~~~c~~~~~~~y~~s~Sst~~~~~~~~~~c~~~~~~~~~~ 93 (364)
......++|+++|.||||||++.|++||||+++||+|..|...|..+..+.|+|++|+||+.+.|.+..|......
T Consensus 39 ~~~~~~~~Y~~~i~IGTPpq~f~v~~DTGS~~lWV~c~~c~~~C~~~~~~~f~p~~SSt~~~~~c~~~~c~~~~~~---- 114 (398)
T KOG1339|consen 39 LSSYSSGEYYGNISIGTPPQSFTVVLDTGSDLLWVPCAPCSSACYSQHNPIFDPSASSTYKSVGCSSPRCKSLPQS---- 114 (398)
T ss_pred cccccccccEEEEecCCCCeeeEEEEeCCCCceeeccccccccccccCCCccCccccccccccCCCCccccccccC----
Confidence 3467788999999999999999999999999999999999546876544559999999999999999999887753
Q ss_pred CCCCCCCcceeeEEeCCCCceEEEEEEEEEEecCC--CccCCeEEeeccCCCCC-C--CCcCeEEecCCCCChhHHHhhh
Q 017894 94 PGCASNKTCVYGIQYGDSSFSVGFFAKETLTLTSK--DVFPKFLLGCGQNNRGL-F--RGAAGLLGLGRNKISLVYQTAS 168 (364)
Q Consensus 94 ~~c~~~~~~~~~~~y~~g~~~~G~~~~D~v~i~~~--~~~~~~~fg~a~~~~~~-~--~~~~GilGLg~~~~s~~~q~~~ 168 (364)
|.+++.|.|.+.|++++.++|++++|+|++++. ...+++.|||+....+. . ..++||||||+.++++..|+..
T Consensus 115 --~~~~~~C~y~i~Ygd~~~~~G~l~~Dtv~~~~~~~~~~~~~~FGc~~~~~g~~~~~~~~dGIlGLg~~~~S~~~q~~~ 192 (398)
T KOG1339|consen 115 --CSPNSSCPYSIQYGDGSSTSGYLATDTVTFGGTTSLPVPNQTFGCGTNNPGSFGLFAAFDGILGLGRGSLSVPSQLPS 192 (398)
T ss_pred --cccCCcCceEEEeCCCCceeEEEEEEEEEEccccccccccEEEEeeecCccccccccccceEeecCCCCccceeeccc
Confidence 777789999999999777999999999999983 57778999999988642 1 4689999999999999999987
Q ss_pred hc--CCcEEEeCCCCCC---CceeEEeCCCCC----CCceEeecccCCCCCcceEEEeeEEEECCEEeeeccccCCC--C
Q 017894 169 KY--KKRFSYCLPSSSS---STGHLTFGPGIK----KSVKFTPLSSAFQGSSFYGLDMTGISVGGEKLPIATTVFST--P 237 (364)
Q Consensus 169 ~~--~~~fsl~l~~~~~---~~g~l~fGg~d~----~~l~~~p~~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~--~ 237 (364)
.. .++||+||.+... ..|.|+||+.|+ +++.|+|+..+.. .+|.+.+.+|+|+++. .+....+.. .
T Consensus 193 ~~~~~~~FS~cL~~~~~~~~~~G~i~fG~~d~~~~~~~l~~tPl~~~~~--~~y~v~l~~I~vgg~~-~~~~~~~~~~~~ 269 (398)
T KOG1339|consen 193 FYNAINVFSYCLSSNGSPSSGGGSIIFGGVDSSHYTGSLTYTPLLSNPS--TYYQVNLDGISVGGKR-PIGSSLFCTDGG 269 (398)
T ss_pred ccCCceeEEEEeCCCCCCCCCCcEEEECCCcccCcCCceEEEeeccCCC--ccEEEEEeEEEECCcc-CCCcceEecCCC
Confidence 64 3569999998753 389999999884 5799999999542 4999999999999865 333333322 5
Q ss_pred CEEEecCCcceecChhHHHHHHHHHHHHHhcCCCCCCccccccceeccCCccccCCeEEEEEcCCcEEEeCCCceEEEcC
Q 017894 238 GTIIDSGTVITRLPPHAYTVLKTAFRQLMSKYPTAPAVSILDTCYDFSEHETITIPKISFFFNGGVEVDVDVTGIMFPIR 317 (364)
Q Consensus 238 ~aiiDtgt~~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~P~i~~~~~g~~~~~i~~~~~~~~~~ 317 (364)
++|+||||++++||.++|++|.+++.+.+.. .......+..|+...-.. ..+|+|+|+|.+|+.+.+++++|+++..
T Consensus 270 ~~iiDSGTs~t~lp~~~y~~i~~~~~~~~~~--~~~~~~~~~~C~~~~~~~-~~~P~i~~~f~~g~~~~l~~~~y~~~~~ 346 (398)
T KOG1339|consen 270 GAIIDSGTSLTYLPTSAYNALREAIGAEVSV--VGTDGEYFVPCFSISTSG-VKLPDITFHFGGGAVFSLPPKNYLVEVS 346 (398)
T ss_pred CEEEECCcceeeccHHHHHHHHHHHHhheec--cccCCceeeecccCCCCc-ccCCcEEEEECCCcEEEeCccceEEEEC
Confidence 7999999999999999999999999997410 111122233566543222 3499999999558999999999999865
Q ss_pred CCeE-EEEEEcCCCCCCeeEecccceeeeEEEEECC-CCEEEEEe--CCCC
Q 017894 318 ASQV-CLAFAGNSDPSDVGIFGNVQQHTLEVVYDVA-HGQVGFAA--GGCS 364 (364)
Q Consensus 318 ~~~~-C~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~-~~rigfa~--~~c~ 364 (364)
.... |+++.........||||..|+|+++++||.. +.|||||+ ..|.
T Consensus 347 ~~~~~Cl~~~~~~~~~~~~ilG~~~~~~~~~~~D~~~~~riGfa~~~~~c~ 397 (398)
T KOG1339|consen 347 DGGGVCLAFFNGMDSGPLWILGDVFQQNYLVVFDLGENSRVGFAPALTNCS 397 (398)
T ss_pred CCCCceeeEEecCCCCceEEEchHHhCCEEEEEeCCCCCEEEeccccccCC
Confidence 4433 9977766333368999999999999999999 99999999 7774
No 13
>PTZ00147 plasmepsin-1; Provisional
Probab=100.00 E-value=9.1e-53 Score=400.66 Aligned_cols=304 Identities=20% Similarity=0.365 Sum_probs=245.4
Q ss_pred CCCcccccccCCccCCccEEEEEEeCCCCcEEEEEEEcCCcceeEeCCCcc-cCcCCCCCCCCCCCCCCcccccCCCCCc
Q 017894 4 KGAATLPAIHGSVVGSGNYIVTVGIGTPKRKFSLIFDTGSDLTWTQCKPCV-GFCYQQKEKIFDPKRSKSYRNVSCSSTV 82 (364)
Q Consensus 4 ~~~~~~p~~~~~~~~~~~y~~~i~iGtP~q~~~~~~DTgS~~~wv~~~~c~-~~c~~~~~~~y~~s~Sst~~~~~~~~~~ 82 (364)
+....+||. ++.+.+|+++|+||||+|++.|+|||||+++||+|..|. ..|..+ +.|||++|+|++..
T Consensus 125 ~~~~~v~L~---n~~n~~Y~~~I~IGTP~Q~f~Vi~DTGSsdlWVps~~C~~~~C~~~--~~yd~s~SsT~~~~------ 193 (453)
T PTZ00147 125 SEFDNVELK---DLANVMSYGEAKLGDNGQKFNFIFDTGSANLWVPSIKCTTEGCETK--NLYDSSKSKTYEKD------ 193 (453)
T ss_pred CCCCeeecc---ccCCCEEEEEEEECCCCeEEEEEEeCCCCcEEEeecCCCcccccCC--CccCCccCcceEEC------
Confidence 345677886 778899999999999999999999999999999999994 457655 78999999999885
Q ss_pred cCCcccCCCCCCCCCCCCcceeeEEeCCCCceEEEEEEEEEEecCCCccCCeEEeeccCCCCC---C--CCcCeEEecCC
Q 017894 83 CSSLESATGNIPGCASNKTCVYGIQYGDSSFSVGFFAKETLTLTSKDVFPKFLLGCGQNNRGL---F--RGAAGLLGLGR 157 (364)
Q Consensus 83 c~~~~~~~~~~~~c~~~~~~~~~~~y~~g~~~~G~~~~D~v~i~~~~~~~~~~fg~a~~~~~~---~--~~~~GilGLg~ 157 (364)
.+.+.+.|++|. +.|.++.|+|+|++ ..++ ..|+++....+. + ..+|||||||+
T Consensus 194 ------------------~~~f~i~Yg~Gs-vsG~~~~DtVtiG~-~~v~-~qF~~~~~~~~f~~~~~~~~~DGILGLG~ 252 (453)
T PTZ00147 194 ------------------GTKVEMNYVSGT-VSGFFSKDLVTIGN-LSVP-YKFIEVTDTNGFEPFYTESDFDGIFGLGW 252 (453)
T ss_pred ------------------CCEEEEEeCCCC-EEEEEEEEEEEECC-EEEE-EEEEEEEeccCcccccccccccceecccC
Confidence 478999999997 89999999999999 6777 578887765431 1 26899999999
Q ss_pred CCCh------hHHHhhhhc---CCcEEEeCCCCCCCceeEEeCCCC----CCCceEeecccCCCCCcceEEEeeEEEECC
Q 017894 158 NKIS------LVYQTASKY---KKRFSYCLPSSSSSTGHLTFGPGI----KKSVKFTPLSSAFQGSSFYGLDMTGISVGG 224 (364)
Q Consensus 158 ~~~s------~~~q~~~~~---~~~fsl~l~~~~~~~g~l~fGg~d----~~~l~~~p~~~~~~~~~~w~v~l~~i~v~~ 224 (364)
+.++ ++.++..+. +++||+||++.....|.|+|||+| .+++.|+|+.. ..+|+|.++ +.+++
T Consensus 253 ~~~S~~~~~p~~~~L~~qg~I~~~vFS~~L~~~~~~~G~L~fGGiD~~ky~G~l~y~pl~~----~~~W~V~l~-~~vg~ 327 (453)
T PTZ00147 253 KDLSIGSVDPYVVELKNQNKIEQAVFTFYLPPEDKHKGYLTIGGIEERFYEGPLTYEKLNH----DLYWQVDLD-VHFGN 327 (453)
T ss_pred CccccccCCCHHHHHHHcCCCCccEEEEEecCCCCCCeEEEECCcChhhcCCceEEEEcCC----CceEEEEEE-EEECC
Confidence 8654 344554432 689999998765568999999998 37999999976 679999998 57776
Q ss_pred EEeeeccccCCCCCEEEecCCcceecChhHHHHHHHHHHHHHhcCCCCCCccccccceeccCCccccCCeEEEEEcCCcE
Q 017894 225 EKLPIATTVFSTPGTIIDSGTVITRLPPHAYTVLKTAFRQLMSKYPTAPAVSILDTCYDFSEHETITIPKISFFFNGGVE 304 (364)
Q Consensus 225 ~~~~~~~~~~~~~~aiiDtgt~~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~P~i~~~~~g~~~ 304 (364)
... .. ..|+|||||+++++|+++++++.+++++.. .+. . ..+..+|.. ..+|+|+|.| ++.+
T Consensus 328 ~~~--~~-----~~aIiDSGTsli~lP~~~~~ai~~~l~~~~--~~~-~------~~y~~~C~~-~~lP~~~f~f-~g~~ 389 (453)
T PTZ00147 328 VSS--EK-----ANVIVDSGTSVITVPTEFLNKFVESLDVFK--VPF-L------PLYVTTCNN-TKLPTLEFRS-PNKV 389 (453)
T ss_pred Eec--Cc-----eeEEECCCCchhcCCHHHHHHHHHHhCCee--cCC-C------CeEEEeCCC-CCCCeEEEEE-CCEE
Confidence 432 11 359999999999999999999999886531 111 1 124556764 4789999999 7899
Q ss_pred EEeCCCceEEEc--CCCeEEE-EEEcCCCCCCeeEecccceeeeEEEEECCCCEEEEEeCC
Q 017894 305 VDVDVTGIMFPI--RASQVCL-AFAGNSDPSDVGIFGNVQQHTLEVVYDVAHGQVGFAAGG 362 (364)
Q Consensus 305 ~~i~~~~~~~~~--~~~~~C~-~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~rigfa~~~ 362 (364)
++|+|++|+.+. .....|+ +++..+...+.||||.+|||++|+|||++++|||||+|.
T Consensus 390 ~~L~p~~yi~~~~~~~~~~C~~~i~~~~~~~~~~ILGd~FLr~~YtVFD~~n~rIGfA~a~ 450 (453)
T PTZ00147 390 YTLEPEYYLQPIEDIGSALCMLNIIPIDLEKNTFILGDPFMRKYFTVFDYDNHTVGFALAK 450 (453)
T ss_pred EEECHHHheeccccCCCcEEEEEEEECCCCCCCEEECHHHhccEEEEEECCCCEEEEEEec
Confidence 999999999863 2346798 677664344579999999999999999999999999985
No 14
>cd05485 Cathepsin_D_like Cathepsin_D_like, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets an
Probab=100.00 E-value=6.2e-53 Score=391.90 Aligned_cols=297 Identities=25% Similarity=0.451 Sum_probs=247.9
Q ss_pred ccCCccEEEEEEeCCCCcEEEEEEEcCCcceeEeCCCcc---cCcCCCCCCCCCCCCCCcccccCCCCCccCCcccCCCC
Q 017894 16 VVGSGNYIVTVGIGTPKRKFSLIFDTGSDLTWTQCKPCV---GFCYQQKEKIFDPKRSKSYRNVSCSSTVCSSLESATGN 92 (364)
Q Consensus 16 ~~~~~~y~~~i~iGtP~q~~~~~~DTgS~~~wv~~~~c~---~~c~~~~~~~y~~s~Sst~~~~~~~~~~c~~~~~~~~~ 92 (364)
++.+..|+++|.||||+|++.|++||||+++||+|..|. ..|..+ ..|+|++|+|++..
T Consensus 6 n~~~~~Y~~~i~vGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~c~~~--~~y~~~~Sst~~~~---------------- 67 (329)
T cd05485 6 NYMDAQYYGVITIGTPPQSFKVVFDTGSSNLWVPSKKCSWTNIACLLH--NKYDSTKSSTYKKN---------------- 67 (329)
T ss_pred eccCCeEEEEEEECCCCcEEEEEEcCCCccEEEecCCCCCCCccccCC--CeECCcCCCCeEEC----------------
Confidence 889999999999999999999999999999999999884 257644 78999999999885
Q ss_pred CCCCCCCCcceeeEEeCCCCceEEEEEEEEEEecCCCccCCeEEeeccCCCC-CC--CCcCeEEecCCCCCh------hH
Q 017894 93 IPGCASNKTCVYGIQYGDSSFSVGFFAKETLTLTSKDVFPKFLLGCGQNNRG-LF--RGAAGLLGLGRNKIS------LV 163 (364)
Q Consensus 93 ~~~c~~~~~~~~~~~y~~g~~~~G~~~~D~v~i~~~~~~~~~~fg~a~~~~~-~~--~~~~GilGLg~~~~s------~~ 163 (364)
.+.|.+.|++|+ +.|.+++|+++|++ ..++++.||++....+ .+ ...+||||||+...+ +.
T Consensus 68 --------~~~~~i~Y~~g~-~~G~~~~D~v~ig~-~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~p~~ 137 (329)
T cd05485 68 --------GTEFAIQYGSGS-LSGFLSTDTVSVGG-VSVKGQTFAEAINEPGLTFVAAKFDGILGMGYSSISVDGVVPVF 137 (329)
T ss_pred --------CeEEEEEECCce-EEEEEecCcEEECC-EEECCEEEEEEEecCCccccccccceEEEcCCccccccCCCCHH
Confidence 578999999997 89999999999999 6899999999977654 22 367999999998655 34
Q ss_pred HHhhhhc---CCcEEEeCCCCCC--CceeEEeCCCCC----CCceEeecccCCCCCcceEEEeeEEEECCEEeeeccccC
Q 017894 164 YQTASKY---KKRFSYCLPSSSS--STGHLTFGPGIK----KSVKFTPLSSAFQGSSFYGLDMTGISVGGEKLPIATTVF 234 (364)
Q Consensus 164 ~q~~~~~---~~~fsl~l~~~~~--~~g~l~fGg~d~----~~l~~~p~~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~ 234 (364)
.|+..+. ++.||+||.+... ..|.|+|||+|+ ++++|+|+.. ..+|.|.+++++++++.+....
T Consensus 138 ~~l~~qg~i~~~~FS~~l~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~----~~~~~v~~~~i~v~~~~~~~~~--- 210 (329)
T cd05485 138 YNMVNQKLVDAPVFSFYLNRDPSAKEGGELILGGSDPKHYTGNFTYLPVTR----KGYWQFKMDSVSVGEGEFCSGG--- 210 (329)
T ss_pred HHHHhCCCCCCCEEEEEecCCCCCCCCcEEEEcccCHHHcccceEEEEcCC----ceEEEEEeeEEEECCeeecCCC---
Confidence 5554442 6899999986432 479999999984 6899999976 7899999999999998764221
Q ss_pred CCCCEEEecCCcceecChhHHHHHHHHHHHHHhcCCCCCCccccccceeccCCccccCCeEEEEEcCCcEEEeCCCceEE
Q 017894 235 STPGTIIDSGTVITRLPPHAYTVLKTAFRQLMSKYPTAPAVSILDTCYDFSEHETITIPKISFFFNGGVEVDVDVTGIMF 314 (364)
Q Consensus 235 ~~~~aiiDtgt~~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~P~i~~~~~g~~~~~i~~~~~~~ 314 (364)
..++|||||++++||++++++|.+++.+. . .. ..+|.++|.....+|+|+|+| +++++.|++++|++
T Consensus 211 --~~~iiDSGtt~~~lP~~~~~~l~~~~~~~---~-~~------~~~~~~~C~~~~~~p~i~f~f-gg~~~~i~~~~yi~ 277 (329)
T cd05485 211 --CQAIADTGTSLIAGPVDEIEKLNNAIGAK---P-II------GGEYMVNCSAIPSLPDITFVL-GGKSFSLTGKDYVL 277 (329)
T ss_pred --cEEEEccCCcceeCCHHHHHHHHHHhCCc---c-cc------CCcEEEeccccccCCcEEEEE-CCEEeEEChHHeEE
Confidence 34999999999999999999999888654 1 11 125888998877899999999 78999999999999
Q ss_pred EcC--CCeEEE-EEEcCC---CCCCeeEecccceeeeEEEEECCCCEEEEEe
Q 017894 315 PIR--ASQVCL-AFAGNS---DPSDVGIFGNVQQHTLEVVYDVAHGQVGFAA 360 (364)
Q Consensus 315 ~~~--~~~~C~-~~~~~~---~~~~~~ilG~~fl~~~y~vfD~~~~rigfa~ 360 (364)
+.. ....|+ +++... ...+.||||.+|||++|+|||++++|||||+
T Consensus 278 ~~~~~~~~~C~~~~~~~~~~~~~~~~~IlG~~fl~~~y~vFD~~~~~ig~a~ 329 (329)
T cd05485 278 KVTQMGQTICLSGFMGIDIPPPAGPLWILGDVFIGKYYTEFDLGNNRVGFAT 329 (329)
T ss_pred EecCCCCCEEeeeEEECcCCCCCCCeEEEchHHhccceEEEeCCCCEEeecC
Confidence 843 246898 577532 2345799999999999999999999999985
No 15
>PTZ00013 plasmepsin 4 (PM4); Provisional
Probab=100.00 E-value=6.1e-52 Score=394.19 Aligned_cols=303 Identities=22% Similarity=0.384 Sum_probs=243.7
Q ss_pred CCcccccccCCccCCccEEEEEEeCCCCcEEEEEEEcCCcceeEeCCCcc-cCcCCCCCCCCCCCCCCcccccCCCCCcc
Q 017894 5 GAATLPAIHGSVVGSGNYIVTVGIGTPKRKFSLIFDTGSDLTWTQCKPCV-GFCYQQKEKIFDPKRSKSYRNVSCSSTVC 83 (364)
Q Consensus 5 ~~~~~p~~~~~~~~~~~y~~~i~iGtP~q~~~~~~DTgS~~~wv~~~~c~-~~c~~~~~~~y~~s~Sst~~~~~~~~~~c 83 (364)
..-++||. ++.+.+|+++|.||||+|++.|+|||||+++||++..|. ..|..+ +.|+|++|+|++..
T Consensus 125 ~~~~~~l~---d~~n~~Yy~~i~IGTP~Q~f~vi~DTGSsdlWV~s~~C~~~~C~~~--~~yd~s~SsT~~~~------- 192 (450)
T PTZ00013 125 ENDVIELD---DVANIMFYGEGEVGDNHQKFMLIFDTGSANLWVPSKKCDSIGCSIK--NLYDSSKSKSYEKD------- 192 (450)
T ss_pred CCCceeee---ccCCCEEEEEEEECCCCeEEEEEEeCCCCceEEecccCCccccccC--CCccCccCcccccC-------
Confidence 34566776 778899999999999999999999999999999999994 468765 78999999999885
Q ss_pred CCcccCCCCCCCCCCCCcceeeEEeCCCCceEEEEEEEEEEecCCCccCCeEEeeccCCCC---CC--CCcCeEEecCCC
Q 017894 84 SSLESATGNIPGCASNKTCVYGIQYGDSSFSVGFFAKETLTLTSKDVFPKFLLGCGQNNRG---LF--RGAAGLLGLGRN 158 (364)
Q Consensus 84 ~~~~~~~~~~~~c~~~~~~~~~~~y~~g~~~~G~~~~D~v~i~~~~~~~~~~fg~a~~~~~---~~--~~~~GilGLg~~ 158 (364)
.+.+.+.|++|+ +.|.+++|+|++++ ..++ ..|+++.+... .+ ..++||||||++
T Consensus 193 -----------------~~~~~i~YG~Gs-v~G~~~~Dtv~iG~-~~~~-~~f~~~~~~~~~~~~~~~~~~dGIlGLg~~ 252 (450)
T PTZ00013 193 -----------------GTKVDITYGSGT-VKGFFSKDLVTLGH-LSMP-YKFIEVTDTDDLEPIYSSSEFDGILGLGWK 252 (450)
T ss_pred -----------------CcEEEEEECCce-EEEEEEEEEEEECC-EEEc-cEEEEEEeccccccceecccccceecccCC
Confidence 478999999997 99999999999999 5777 57777765432 12 268999999998
Q ss_pred CCh------hHHHhhhhc---CCcEEEeCCCCCCCceeEEeCCCCC----CCceEeecccCCCCCcceEEEeeEEEECCE
Q 017894 159 KIS------LVYQTASKY---KKRFSYCLPSSSSSTGHLTFGPGIK----KSVKFTPLSSAFQGSSFYGLDMTGISVGGE 225 (364)
Q Consensus 159 ~~s------~~~q~~~~~---~~~fsl~l~~~~~~~g~l~fGg~d~----~~l~~~p~~~~~~~~~~w~v~l~~i~v~~~ 225 (364)
.++ ++.|+..+. +++||+||++.....|.|+|||+|+ +++.|+|+.. +.+|+|+++ +.++..
T Consensus 253 ~~s~~~~~p~~~~L~~qg~I~~~vFS~~L~~~~~~~G~L~fGGiD~~~y~G~L~y~pv~~----~~yW~I~l~-v~~G~~ 327 (450)
T PTZ00013 253 DLSIGSIDPIVVELKNQNKIDNALFTFYLPVHDVHAGYLTIGGIEEKFYEGNITYEKLNH----DLYWQIDLD-VHFGKQ 327 (450)
T ss_pred ccccccCCCHHHHHHhccCcCCcEEEEEecCCCCCCCEEEECCcCccccccceEEEEcCc----CceEEEEEE-EEECce
Confidence 654 455655442 6899999987555689999999984 7999999976 679999998 666543
Q ss_pred EeeeccccCCCCCEEEecCCcceecChhHHHHHHHHHHHHHhcCCCCCCccccccceeccCCccccCCeEEEEEcCCcEE
Q 017894 226 KLPIATTVFSTPGTIIDSGTVITRLPPHAYTVLKTAFRQLMSKYPTAPAVSILDTCYDFSEHETITIPKISFFFNGGVEV 305 (364)
Q Consensus 226 ~~~~~~~~~~~~~aiiDtgt~~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~P~i~~~~~g~~~~ 305 (364)
.. .. ..|+|||||+++++|.+++++++++++... .+ .. ..|..+|.. ..+|+|+|.| ++.++
T Consensus 328 ~~--~~-----~~aIlDSGTSli~lP~~~~~~i~~~l~~~~--~~-~~------~~y~~~C~~-~~lP~i~F~~-~g~~~ 389 (450)
T PTZ00013 328 TM--QK-----ANVIVDSGTTTITAPSEFLNKFFANLNVIK--VP-FL------PFYVTTCDN-KEMPTLEFKS-ANNTY 389 (450)
T ss_pred ec--cc-----cceEECCCCccccCCHHHHHHHHHHhCCee--cC-CC------CeEEeecCC-CCCCeEEEEE-CCEEE
Confidence 32 11 359999999999999999999999886541 11 11 125566754 4789999999 78999
Q ss_pred EeCCCceEEEc--CCCeEEE-EEEcCCCCCCeeEecccceeeeEEEEECCCCEEEEEeCC
Q 017894 306 DVDVTGIMFPI--RASQVCL-AFAGNSDPSDVGIFGNVQQHTLEVVYDVAHGQVGFAAGG 362 (364)
Q Consensus 306 ~i~~~~~~~~~--~~~~~C~-~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~rigfa~~~ 362 (364)
+|+|++|+.+. ..+..|+ ++.+.+...+.||||.+|||++|+|||++++|||||+++
T Consensus 390 ~L~p~~Yi~~~~~~~~~~C~~~i~~~~~~~~~~ILGd~FLr~~Y~VFD~~n~rIGfA~a~ 449 (450)
T PTZ00013 390 TLEPEYYMNPLLDVDDTLCMITMLPVDIDDNTFILGDPFMRKYFTVFDYDKESVGFAIAK 449 (450)
T ss_pred EECHHHheehhccCCCCeeEEEEEECCCCCCCEEECHHHhccEEEEEECCCCEEEEEEeC
Confidence 99999999752 2356897 676654445679999999999999999999999999985
No 16
>cd05473 beta_secretase_like Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease. Beta-secretase also called BACE (beta-site of APP cleaving enzyme) or memapsin-2. Beta-secretase is an aspartic-acid protease important in the pathogenesis of Alzheimer's disease, and in the formation of myelin sheaths in peripheral nerve cells. It cleaves amyloid precursor protein (APP) to reveal the N-terminus of the beta-amyloid peptides. The beta-amyloid peptides are the major components of the amyloid plaques formed in the brain of patients with Alzheimer's disease (AD). Since BACE mediates one of the cleavages responsible for generation of AD, it is regarded as a potential target for pharmacological intervention in AD. Beta-secretase is a member of pepsin family of aspartic proteases. Same as other aspartic proteases, beta-secretase is a bilobal enzyme, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two
Probab=100.00 E-value=2.2e-50 Score=380.08 Aligned_cols=305 Identities=23% Similarity=0.363 Sum_probs=230.8
Q ss_pred cEEEEEEeCCCCcEEEEEEEcCCcceeEeCCCcccCcCCCCCCCCCCCCCCcccccCCCCCccCCcccCCCCCCCCCCCC
Q 017894 21 NYIVTVGIGTPKRKFSLIFDTGSDLTWTQCKPCVGFCYQQKEKIFDPKRSKSYRNVSCSSTVCSSLESATGNIPGCASNK 100 (364)
Q Consensus 21 ~y~~~i~iGtP~q~~~~~~DTgS~~~wv~~~~c~~~c~~~~~~~y~~s~Sst~~~~~~~~~~c~~~~~~~~~~~~c~~~~ 100 (364)
.|+++|.||||+|++.|+|||||+++||+|..| |.. ++.|+|++|+|++..
T Consensus 3 ~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~~~---~~~--~~~f~~~~SsT~~~~------------------------ 53 (364)
T cd05473 3 GYYIEMLIGTPPQKLNILVDTGSSNFAVAAAPH---PFI--HTYFHRELSSTYRDL------------------------ 53 (364)
T ss_pred ceEEEEEecCCCceEEEEEecCCcceEEEcCCC---ccc--cccCCchhCcCcccC------------------------
Confidence 589999999999999999999999999999877 332 378999999999986
Q ss_pred cceeeEEeCCCCceEEEEEEEEEEecCCCccCC--eEEeeccCCCCCC---CCcCeEEecCCCCC------------hhH
Q 017894 101 TCVYGIQYGDSSFSVGFFAKETLTLTSKDVFPK--FLLGCGQNNRGLF---RGAAGLLGLGRNKI------------SLV 163 (364)
Q Consensus 101 ~~~~~~~y~~g~~~~G~~~~D~v~i~~~~~~~~--~~fg~a~~~~~~~---~~~~GilGLg~~~~------------s~~ 163 (364)
.+.|.+.|++|+ +.|.+++|+|+|++. .... +.|+++.+....+ ...+||||||++.+ +++
T Consensus 54 ~~~~~i~Yg~Gs-~~G~~~~D~v~ig~~-~~~~~~~~~~~~~~~~~~~~~~~~~dGIlGLg~~~l~~~~~~~~~~~~~l~ 131 (364)
T cd05473 54 GKGVTVPYTQGS-WEGELGTDLVSIPKG-PNVTFRANIAAITESENFFLNGSNWEGILGLAYAELARPDSSVEPFFDSLV 131 (364)
T ss_pred CceEEEEECcce-EEEEEEEEEEEECCC-CccceEEeeEEEeccccceecccccceeeeecccccccCCCCCCCHHHHHH
Confidence 578999999997 799999999999862 2111 2344554444332 25799999998765 344
Q ss_pred HHhhhhcCCcEEEeCCC---------CCCCceeEEeCCCCC----CCceEeecccCCCCCcceEEEeeEEEECCEEeeec
Q 017894 164 YQTASKYKKRFSYCLPS---------SSSSTGHLTFGPGIK----KSVKFTPLSSAFQGSSFYGLDMTGISVGGEKLPIA 230 (364)
Q Consensus 164 ~q~~~~~~~~fsl~l~~---------~~~~~g~l~fGg~d~----~~l~~~p~~~~~~~~~~w~v~l~~i~v~~~~~~~~ 230 (364)
+|... +++||++|.. .....|.|+|||+|+ +++.|+|+.. ..+|.|.+++|+|+++.+..+
T Consensus 132 ~q~~~--~~~FS~~l~~~~~~~~~~~~~~~~g~l~fGg~D~~~~~g~l~~~p~~~----~~~~~v~l~~i~vg~~~~~~~ 205 (364)
T cd05473 132 KQTGI--PDVFSLQMCGAGLPVNGSASGTVGGSMVIGGIDPSLYKGDIWYTPIRE----EWYYEVIILKLEVGGQSLNLD 205 (364)
T ss_pred hccCC--ccceEEEecccccccccccccCCCcEEEeCCcCHhhcCCCceEEecCc----ceeEEEEEEEEEECCEecccc
Confidence 44442 5799998742 122479999999984 6899999987 679999999999999988755
Q ss_pred cccCCCCCEEEecCCcceecChhHHHHHHHHHHHHHhcCCCCCCc---cccccceeccCCccccCCeEEEEEcCC-----
Q 017894 231 TTVFSTPGTIIDSGTVITRLPPHAYTVLKTAFRQLMSKYPTAPAV---SILDTCYDFSEHETITIPKISFFFNGG----- 302 (364)
Q Consensus 231 ~~~~~~~~aiiDtgt~~~~lp~~~~~~l~~~l~~~~~~~~~~~~~---~~~~~c~~~~~~~~~~~P~i~~~~~g~----- 302 (364)
...+....+||||||++++||++++++|++++.+.... +..... .....|+.........+|+|+|.|++.
T Consensus 206 ~~~~~~~~~ivDSGTs~~~lp~~~~~~l~~~l~~~~~~-~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~g~~~~~~ 284 (364)
T cd05473 206 CKEYNYDKAIVDSGTTNLRLPVKVFNAAVDAIKAASLI-EDFPDGFWLGSQLACWQKGTTPWEIFPKISIYLRDENSSQS 284 (364)
T ss_pred cccccCccEEEeCCCcceeCCHHHHHHHHHHHHhhccc-ccCCccccCcceeecccccCchHhhCCcEEEEEccCCCCce
Confidence 43332235999999999999999999999999987431 111111 011245543322234699999999642
Q ss_pred cEEEeCCCceEEEcC---CCeEEEEEEcCCCCCCeeEecccceeeeEEEEECCCCEEEEEeCCCC
Q 017894 303 VEVDVDVTGIMFPIR---ASQVCLAFAGNSDPSDVGIFGNVQQHTLEVVYDVAHGQVGFAAGGCS 364 (364)
Q Consensus 303 ~~~~i~~~~~~~~~~---~~~~C~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~rigfa~~~c~ 364 (364)
.++.|+|++|+.... .+..|+.+.... ..+.+|||..|||++|+|||++++|||||+++|+
T Consensus 285 ~~l~l~p~~Y~~~~~~~~~~~~C~~~~~~~-~~~~~ILG~~flr~~yvvfD~~~~rIGfa~~~C~ 348 (364)
T cd05473 285 FRITILPQLYLRPVEDHGTQLDCYKFAISQ-STNGTVIGAVIMEGFYVVFDRANKRVGFAVSTCA 348 (364)
T ss_pred EEEEECHHHhhhhhccCCCcceeeEEeeec-CCCceEEeeeeEcceEEEEECCCCEEeeEecccc
Confidence 478999999998642 246898543222 2346999999999999999999999999999995
No 17
>cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants. This family contains pepsin like aspartic proteases from plants including Chloroplast Nucleoids DNA-binding Protease and Nucellin. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco and Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The enzymes specifically cleave bonds in peptides which
Probab=100.00 E-value=5.1e-50 Score=361.68 Aligned_cols=252 Identities=44% Similarity=0.834 Sum_probs=218.5
Q ss_pred cEEEEEEeCCCCcEEEEEEEcCCcceeEeCCCcccCcCCCCCCCCCCCCCCcccccCCCCCccCCcccCCCCCCCCCCCC
Q 017894 21 NYIVTVGIGTPKRKFSLIFDTGSDLTWTQCKPCVGFCYQQKEKIFDPKRSKSYRNVSCSSTVCSSLESATGNIPGCASNK 100 (364)
Q Consensus 21 ~y~~~i~iGtP~q~~~~~~DTgS~~~wv~~~~c~~~c~~~~~~~y~~s~Sst~~~~~~~~~~c~~~~~~~~~~~~c~~~~ 100 (364)
.|+++|+||||+|++.|+|||||+++||+| |
T Consensus 1 ~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~--~----------------------------------------------- 31 (265)
T cd05476 1 EYLVTLSIGTPPQPFSLIVDTGSDLTWTQC--C----------------------------------------------- 31 (265)
T ss_pred CeEEEEecCCCCcceEEEecCCCCCEEEcC--C-----------------------------------------------
Confidence 489999999999999999999999999964 1
Q ss_pred cceeeEEeCCCCceEEEEEEEEEEecCCC--ccCCeEEeeccCCCC-CCCCcCeEEecCCCCChhHHHhhhhcCCcEEEe
Q 017894 101 TCVYGIQYGDSSFSVGFFAKETLTLTSKD--VFPKFLLGCGQNNRG-LFRGAAGLLGLGRNKISLVYQTASKYKKRFSYC 177 (364)
Q Consensus 101 ~~~~~~~y~~g~~~~G~~~~D~v~i~~~~--~~~~~~fg~a~~~~~-~~~~~~GilGLg~~~~s~~~q~~~~~~~~fsl~ 177 (364)
.+.+.|++++.+.|.+++|+|.|++ . .++++.||++.+..+ ....++||||||+...++++|+.... ++||+|
T Consensus 32 --~~~~~Y~dg~~~~G~~~~D~v~~g~-~~~~~~~~~Fg~~~~~~~~~~~~~~GIlGLg~~~~s~~~ql~~~~-~~Fs~~ 107 (265)
T cd05476 32 --SYEYSYGDGSSTSGVLATETFTFGD-SSVSVPNVAFGCGTDNEGGSFGGADGILGLGRGPLSLVSQLGSTG-NKFSYC 107 (265)
T ss_pred --ceEeEeCCCceeeeeEEEEEEEecC-CCCccCCEEEEecccccCCccCCCCEEEECCCCcccHHHHhhccc-CeeEEE
Confidence 4678999887899999999999999 5 789999999998864 22378999999999999999998874 899999
Q ss_pred CCCC--CCCceeEEeCCCCC---CCceEeecccCCCCCcceEEEeeEEEECCEEeeeccccC-----CCCCEEEecCCcc
Q 017894 178 LPSS--SSSTGHLTFGPGIK---KSVKFTPLSSAFQGSSFYGLDMTGISVGGEKLPIATTVF-----STPGTIIDSGTVI 247 (364)
Q Consensus 178 l~~~--~~~~g~l~fGg~d~---~~l~~~p~~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~-----~~~~aiiDtgt~~ 247 (364)
|.+. ....|+|+||++|+ +++.|+|+..++....+|.+++++|+|+++.+.++...+ ....++|||||++
T Consensus 108 l~~~~~~~~~G~l~fGg~d~~~~~~l~~~p~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~ai~DTGTs~ 187 (265)
T cd05476 108 LVPHDDTGGSSPLILGDAADLGGSGVVYTPLVKNPANPTYYYVNLEGISVGGKRLPIPPSVFAIDSDGSGGTIIDSGTTL 187 (265)
T ss_pred ccCCCCCCCCCeEEECCcccccCCCceEeecccCCCCCCceEeeeEEEEECCEEecCCchhcccccCCCCcEEEeCCCcc
Confidence 9875 34589999999997 899999998865446789999999999999876422111 1146999999999
Q ss_pred eecChhHHHHHHHHHHHHHhcCCCCCCccccccceeccCCccccCCeEEEEEcCCcEEEeCCCceEEEcCCCeEEEEEEc
Q 017894 248 TRLPPHAYTVLKTAFRQLMSKYPTAPAVSILDTCYDFSEHETITIPKISFFFNGGVEVDVDVTGIMFPIRASQVCLAFAG 327 (364)
Q Consensus 248 ~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~P~i~~~~~g~~~~~i~~~~~~~~~~~~~~C~~~~~ 327 (364)
++||++++ |+|+|.|.++.++.+++++|+++...+..|+++..
T Consensus 188 ~~lp~~~~-------------------------------------P~i~~~f~~~~~~~i~~~~y~~~~~~~~~C~~~~~ 230 (265)
T cd05476 188 TYLPDPAY-------------------------------------PDLTLHFDGGADLELPPENYFVDVGEGVVCLAILS 230 (265)
T ss_pred eEcCcccc-------------------------------------CCEEEEECCCCEEEeCcccEEEECCCCCEEEEEec
Confidence 99999987 78999995589999999999998666789998887
Q ss_pred CCCCCCeeEecccceeeeEEEEECCCCEEEEEeCCC
Q 017894 328 NSDPSDVGIFGNVQQHTLEVVYDVAHGQVGFAAGGC 363 (364)
Q Consensus 328 ~~~~~~~~ilG~~fl~~~y~vfD~~~~rigfa~~~c 363 (364)
.. ..+.+|||.+|||++|++||++++|||||+++|
T Consensus 231 ~~-~~~~~ilG~~fl~~~~~vFD~~~~~iGfa~~~C 265 (265)
T cd05476 231 SS-SGGVSILGNIQQQNFLVEYDLENSRLGFAPADC 265 (265)
T ss_pred CC-CCCcEEEChhhcccEEEEEECCCCEEeeecCCC
Confidence 63 456799999999999999999999999999999
No 18
>cd05489 xylanase_inhibitor_I_like TAXI-I inhibits degradation of xylan in the cell wall. Xylanase inhibitor-I (TAXI-I) is a member of potent TAXI-type inhibitors of fungal and bacterial family 11 xylanases. Plants developed a diverse battery of defense mechanisms in response to continual challenges by a broad spectrum of pathogenic microorganisms. Their defense arsenal includes inhibitors of cell wall-degrading enzymes, which hinder a possible invasion and colonization by antagonists. Xylanases of fungal and bacterial pathogens are the key enzymes in the degradation of xylan in the cell wall. Plants secrete proteins that inhibit these degradation glycosidases, including xylanase. Surprisingly, TAXI-I displays structural homology with the pepsin-like family of aspartic proteases but is proteolytically nonfunctional, because one or more residues of the essential catalytic triad are absent. The structure of the TAXI-inhibitor, Aspergillus niger xylanase I complex, illustrates the ability
Probab=100.00 E-value=3.8e-49 Score=368.97 Aligned_cols=318 Identities=29% Similarity=0.517 Sum_probs=254.3
Q ss_pred eCCCCcE-EEEEEEcCCcceeEeCCCcccCcCCCCCCCCCCCCCCcccccCCCCCccCCcccCCCC-------CCCCCCC
Q 017894 28 IGTPKRK-FSLIFDTGSDLTWTQCKPCVGFCYQQKEKIFDPKRSKSYRNVSCSSTVCSSLESATGN-------IPGCASN 99 (364)
Q Consensus 28 iGtP~q~-~~~~~DTgS~~~wv~~~~c~~~c~~~~~~~y~~s~Sst~~~~~~~~~~c~~~~~~~~~-------~~~c~~~ 99 (364)
+|||-.+ +.|++||||+++||+|.+ .+|+||..++|+++.|....+++.. ...|.+
T Consensus 2 ~~~~~~~~~~~~~DTGS~l~WvqC~~---------------~~sst~~~~~C~s~~C~~~~~~~~~~~~~~~~~~~c~~- 65 (362)
T cd05489 2 TITPLKGAVPLVLDLAGPLLWSTCDA---------------GHSSTYQTVPCSSSVCSLANRYHCPGTCGGAPGPGCGN- 65 (362)
T ss_pred cccCccCCeeEEEECCCCceeeeCCC---------------CCcCCCCccCcCChhhccccccCCCccccCCCCCCCCC-
Confidence 5788777 999999999999998763 3588999999999999877655321 124644
Q ss_pred CcceeeEE-eCCCCceEEEEEEEEEEecCC-------CccCCeEEeeccCCC--CCCCCcCeEEecCCCCChhHHHhhhh
Q 017894 100 KTCVYGIQ-YGDSSFSVGFFAKETLTLTSK-------DVFPKFLLGCGQNNR--GLFRGAAGLLGLGRNKISLVYQTASK 169 (364)
Q Consensus 100 ~~~~~~~~-y~~g~~~~G~~~~D~v~i~~~-------~~~~~~~fg~a~~~~--~~~~~~~GilGLg~~~~s~~~q~~~~ 169 (364)
+.|.+... |.+|+...|++++|+++|+.. ..++++.|||+.... +.+..++||||||+.++|++.|+...
T Consensus 66 ~~C~y~~~~y~~gs~t~G~l~~Dtl~~~~~~g~~~~~~~~~~~~FGC~~~~~~~~~~~~~dGIlGLg~~~lSl~sql~~~ 145 (362)
T cd05489 66 NTCTAHPYNPVTGECATGDLTQDVLSANTTDGSNPLLVVIFNFVFSCAPSLLLKGLPPGAQGVAGLGRSPLSLPAQLASA 145 (362)
T ss_pred CcCeeEccccccCcEeeEEEEEEEEEecccCCCCcccceeCCEEEEcCCcccccCCccccccccccCCCccchHHHhhhh
Confidence 35877654 778877899999999999742 157899999998863 34456899999999999999998775
Q ss_pred c--CCcEEEeCCCCCCCceeEEeCCCCC----------CCceEeecccCCCCCcceEEEeeEEEECCEEeeeccccCC--
Q 017894 170 Y--KKRFSYCLPSSSSSTGHLTFGPGIK----------KSVKFTPLSSAFQGSSFYGLDMTGISVGGEKLPIATTVFS-- 235 (364)
Q Consensus 170 ~--~~~fsl~l~~~~~~~g~l~fGg~d~----------~~l~~~p~~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~-- 235 (364)
. +++||+||.+.....|.|+||+.+. +.+.|+|+..++....+|.|+|++|+|+++.+.+++..+.
T Consensus 146 ~~~~~~FS~CL~~~~~~~g~l~fG~~~~~~~~~~~~~~~~~~~tPl~~~~~~~~~Y~v~l~~IsVg~~~l~~~~~~~~~~ 225 (362)
T cd05489 146 FGVARKFALCLPSSPGGPGVAIFGGGPYYLFPPPIDLSKSLSYTPLLTNPRKSGEYYIGVTSIAVNGHAVPLNPTLSAND 225 (362)
T ss_pred cCCCcceEEEeCCCCCCCeeEEECCCchhcccccccccCCccccccccCCCCCCceEEEEEEEEECCEECCCCchhcccc
Confidence 3 4899999987544589999999873 7899999998654457999999999999998876543221
Q ss_pred ---CCCEEEecCCcceecChhHHHHHHHHHHHHHhcCCCCCCc-cccccceecc----CCccccCCeEEEEEcC-CcEEE
Q 017894 236 ---TPGTIIDSGTVITRLPPHAYTVLKTAFRQLMSKYPTAPAV-SILDTCYDFS----EHETITIPKISFFFNG-GVEVD 306 (364)
Q Consensus 236 ---~~~aiiDtgt~~~~lp~~~~~~l~~~l~~~~~~~~~~~~~-~~~~~c~~~~----~~~~~~~P~i~~~~~g-~~~~~ 306 (364)
.++++|||||++++||.++|++|.+++.+.+......... ..++.||... |.....+|+|+|+|+| |+++.
T Consensus 226 ~~~~~g~iiDSGTs~t~lp~~~y~~l~~a~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~it~~f~g~g~~~~ 305 (362)
T cd05489 226 RLGPGGVKLSTVVPYTVLRSDIYRAFTQAFAKATARIPRVPAAAVFPELCYPASALGNTRLGYAVPAIDLVLDGGGVNWT 305 (362)
T ss_pred ccCCCcEEEecCCceEEECHHHHHHHHHHHHHHhcccCcCCCCCCCcCccccCCCcCCcccccccceEEEEEeCCCeEEE
Confidence 2479999999999999999999999999886543322221 1136798754 2234689999999976 79999
Q ss_pred eCCCceEEEcCCCeEEEEEEcCCCC-CCeeEecccceeeeEEEEECCCCEEEEEeC
Q 017894 307 VDVTGIMFPIRASQVCLAFAGNSDP-SDVGIFGNVQQHTLEVVYDVAHGQVGFAAG 361 (364)
Q Consensus 307 i~~~~~~~~~~~~~~C~~~~~~~~~-~~~~ilG~~fl~~~y~vfD~~~~rigfa~~ 361 (364)
|+|++|+++...+.+|++|...+.. ...||||..|||++|++||.+++|||||++
T Consensus 306 l~~~ny~~~~~~~~~Cl~f~~~~~~~~~~~IlG~~~~~~~~vvyD~~~~riGfa~~ 361 (362)
T cd05489 306 IFGANSMVQVKGGVACLAFVDGGSEPRPAVVIGGHQMEDNLLVFDLEKSRLGFSSS 361 (362)
T ss_pred EcCCceEEEcCCCcEEEEEeeCCCCCCceEEEeeheecceEEEEECCCCEeecccC
Confidence 9999999997667899999876432 457999999999999999999999999975
No 19
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation. Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. This degradation is a characteristic of programmed cell death. Nucellins are plant aspartic proteases specifically expressed in nucellar cells during degradation. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region, and two other regions nearly identical to two regions of plant aspartic proteases. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. Although the three-dimensional structures of the two lobes are very similar, the amino acid sequences are more d
Probab=100.00 E-value=3.3e-48 Score=351.12 Aligned_cols=256 Identities=32% Similarity=0.600 Sum_probs=212.5
Q ss_pred ccEEEEEEeCCCCcEEEEEEEcCCcceeEeCC-CcccCcCCCCCCCCCCCCCCcccccCCCCCccCCcccCCCCCCCCCC
Q 017894 20 GNYIVTVGIGTPKRKFSLIFDTGSDLTWTQCK-PCVGFCYQQKEKIFDPKRSKSYRNVSCSSTVCSSLESATGNIPGCAS 98 (364)
Q Consensus 20 ~~y~~~i~iGtP~q~~~~~~DTgS~~~wv~~~-~c~~~c~~~~~~~y~~s~Sst~~~~~~~~~~c~~~~~~~~~~~~c~~ 98 (364)
++|+++|.||||+|++.|++||||+++||+|. .| ..|
T Consensus 1 ~~Y~~~i~iGtP~q~~~v~~DTGS~~~Wv~c~~~c-~~c----------------------------------------- 38 (273)
T cd05475 1 GYYYVTINIGNPPKPYFLDIDTGSDLTWLQCDAPC-TGC----------------------------------------- 38 (273)
T ss_pred CceEEEEEcCCCCeeEEEEEccCCCceEEeCCCCC-CCC-----------------------------------------
Confidence 47999999999999999999999999999874 44 223
Q ss_pred CCcceeeEEeCCCCceEEEEEEEEEEecCC---CccCCeEEeeccCCCCC----CCCcCeEEecCCCCChhHHHhhhhc-
Q 017894 99 NKTCVYGIQYGDSSFSVGFFAKETLTLTSK---DVFPKFLLGCGQNNRGL----FRGAAGLLGLGRNKISLVYQTASKY- 170 (364)
Q Consensus 99 ~~~~~~~~~y~~g~~~~G~~~~D~v~i~~~---~~~~~~~fg~a~~~~~~----~~~~~GilGLg~~~~s~~~q~~~~~- 170 (364)
.|.|.+.|++++.++|.+++|+|+++.. ..++++.|||+....+. ....+||||||+.+.++++|+..+.
T Consensus 39 --~c~~~i~Ygd~~~~~G~~~~D~v~~~~~~~~~~~~~~~Fgc~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~ql~~~~~ 116 (273)
T cd05475 39 --QCDYEIEYADGGSSMGVLVTDIFSLKLTNGSRAKPRIAFGCGYDQQGPLLNPPPPTDGILGLGRGKISLPSQLASQGI 116 (273)
T ss_pred --cCccEeEeCCCCceEEEEEEEEEEEeecCCCcccCCEEEEeeeccCCcccCCCccCCEEEECCCCCCCHHHHHHhcCC
Confidence 2678999998777999999999999641 46789999999876432 2378999999999999999988653
Q ss_pred -CCcEEEeCCCCCCCceeEEeCCCC--CCCceEeecccCCCCCcceEEEeeEEEECCEEeeeccccCCCCCEEEecCCcc
Q 017894 171 -KKRFSYCLPSSSSSTGHLTFGPGI--KKSVKFTPLSSAFQGSSFYGLDMTGISVGGEKLPIATTVFSTPGTIIDSGTVI 247 (364)
Q Consensus 171 -~~~fsl~l~~~~~~~g~l~fGg~d--~~~l~~~p~~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~~~aiiDtgt~~ 247 (364)
+++||+||++. .+|.|+||+.. .+++.|+|+..++. ..+|.|++.+|+|+++...... ..++|||||++
T Consensus 117 i~~~Fs~~l~~~--~~g~l~~G~~~~~~g~i~ytpl~~~~~-~~~y~v~l~~i~vg~~~~~~~~-----~~~ivDTGTt~ 188 (273)
T cd05475 117 IKNVIGHCLSSN--GGGFLFFGDDLVPSSGVTWTPMRRESQ-KKHYSPGPASLLFNGQPTGGKG-----LEVVFDSGSSY 188 (273)
T ss_pred cCceEEEEccCC--CCeEEEECCCCCCCCCeeecccccCCC-CCeEEEeEeEEEECCEECcCCC-----ceEEEECCCce
Confidence 68999999862 36999999753 46899999987542 4689999999999998543221 35999999999
Q ss_pred eecChhHHHHHHHHHHHHHhcCCCCCCccccccceeccCCccccCCeEEEEEcCC---cEEEeCCCceEEEcCCCeEEEE
Q 017894 248 TRLPPHAYTVLKTAFRQLMSKYPTAPAVSILDTCYDFSEHETITIPKISFFFNGG---VEVDVDVTGIMFPIRASQVCLA 324 (364)
Q Consensus 248 ~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~P~i~~~~~g~---~~~~i~~~~~~~~~~~~~~C~~ 324 (364)
++||+++| +|+|+|.|.+. ++++|++++|+++...+..|++
T Consensus 189 t~lp~~~y------------------------------------~p~i~~~f~~~~~~~~~~l~~~~y~~~~~~~~~Cl~ 232 (273)
T cd05475 189 TYFNAQAY------------------------------------FKPLTLKFGKGWRTRLLEIPPENYLIISEKGNVCLG 232 (273)
T ss_pred EEcCCccc------------------------------------cccEEEEECCCCceeEEEeCCCceEEEcCCCCEEEE
Confidence 99999865 57899999543 7999999999998666678998
Q ss_pred EEcCCC--CCCeeEecccceeeeEEEEECCCCEEEEEeCCC
Q 017894 325 FAGNSD--PSDVGIFGNVQQHTLEVVYDVAHGQVGFAAGGC 363 (364)
Q Consensus 325 ~~~~~~--~~~~~ilG~~fl~~~y~vfD~~~~rigfa~~~c 363 (364)
+....+ ....||||..|||++|++||++++|||||+++|
T Consensus 233 ~~~~~~~~~~~~~ilG~~~l~~~~~vfD~~~~riGfa~~~C 273 (273)
T cd05475 233 ILNGSEIGLGNTNIIGDISMQGLMVIYDNEKQQIGWVRSDC 273 (273)
T ss_pred EecCCCcCCCceEEECceEEEeeEEEEECcCCEeCcccCCC
Confidence 776532 245799999999999999999999999999999
No 20
>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin. The members of this family are aspartic proteases of fungal origin, including aspergillopepsin, rhizopuspepsin, endothiapepsin, and rodosporapepsin. The various fungal species in this family may be the most economically important genus of fungi. They may serve as virulence factors or as industrial aids. For example, Aspergillopepsin from A. fumigatus is involved in invasive aspergillosis owing to its elastolytic activity and Aspergillopepsins from the mold A. saitoi are used in fermentation industry. Aspartic proteinases are a group of proteolytic enzymes in which the scissile peptide bond is attacked by a nucleophilic water molecule activated by two aspartic residues in a DT(S)G motif at the active site. They have a similar fold composed of two beta-barrel domains. Between the N-terminal and C-terminal domains, each of which contributes one catalytic aspartic residue, there is an extended active-
Probab=100.00 E-value=8.7e-49 Score=356.25 Aligned_cols=261 Identities=26% Similarity=0.425 Sum_probs=216.0
Q ss_pred EEEEEEeCCCCcEEEEEEEcCCcceeEeCCCcccCcCCCCCCCCCCCCCCcccccCCCCCccCCcccCCCCCCCCCCCCc
Q 017894 22 YIVTVGIGTPKRKFSLIFDTGSDLTWTQCKPCVGFCYQQKEKIFDPKRSKSYRNVSCSSTVCSSLESATGNIPGCASNKT 101 (364)
Q Consensus 22 y~~~i~iGtP~q~~~~~~DTgS~~~wv~~~~c~~~c~~~~~~~y~~s~Sst~~~~~~~~~~c~~~~~~~~~~~~c~~~~~ 101 (364)
|+++|+||||+|++.|+|||||+++||++..|. .|..+.+..|++++|+|++..+ .
T Consensus 1 Y~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~~c~-~~~~~~~~~y~~~~Sst~~~~~-----------------------~ 56 (278)
T cd06097 1 YLTPVKIGTPPQTLNLDLDTGSSDLWVFSSETP-AAQQGGHKLYDPSKSSTAKLLP-----------------------G 56 (278)
T ss_pred CeeeEEECCCCcEEEEEEeCCCCceeEeeCCCC-chhhccCCcCCCccCccceecC-----------------------C
Confidence 789999999999999999999999999999994 3655556789999999998752 4
Q ss_pred ceeeEEeCCCCceEEEEEEEEEEecCCCccCCeEEeeccCCCC-CC--CCcCeEEecCCCCCh---------hHHHhhhh
Q 017894 102 CVYGIQYGDSSFSVGFFAKETLTLTSKDVFPKFLLGCGQNNRG-LF--RGAAGLLGLGRNKIS---------LVYQTASK 169 (364)
Q Consensus 102 ~~~~~~y~~g~~~~G~~~~D~v~i~~~~~~~~~~fg~a~~~~~-~~--~~~~GilGLg~~~~s---------~~~q~~~~ 169 (364)
+.+.+.|++|+.+.|.+++|+|+|++ ..++++.||++..... .+ ..++||||||++..+ +.+++..+
T Consensus 57 ~~~~i~Y~~G~~~~G~~~~D~v~ig~-~~~~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~~~~~~~~~~~~~~~l~~~ 135 (278)
T cd06097 57 ATWSISYGDGSSASGIVYTDTVSIGG-VEVPNQAIELATAVSASFFSDTASDGLLGLAFSSINTVQPPKQKTFFENALSS 135 (278)
T ss_pred cEEEEEeCCCCeEEEEEEEEEEEECC-EEECCeEEEEEeecCccccccccccceeeeccccccccccCCCCCHHHHHHHh
Confidence 68999999997789999999999999 6899999999988754 22 379999999997653 34444433
Q ss_pred c-CCcEEEeCCCCCCCceeEEeCCCCC----CCceEeecccCCCCCcceEEEeeEEEECCEEeeeccccCCCCCEEEecC
Q 017894 170 Y-KKRFSYCLPSSSSSTGHLTFGPGIK----KSVKFTPLSSAFQGSSFYGLDMTGISVGGEKLPIATTVFSTPGTIIDSG 244 (364)
Q Consensus 170 ~-~~~fsl~l~~~~~~~g~l~fGg~d~----~~l~~~p~~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~~~aiiDtg 244 (364)
. ++.||++|.+ ...|+|+|||+|+ +++.|+|+..+ ..+|.|++++|+|+++....... ..++||||
T Consensus 136 ~~~~~Fs~~l~~--~~~G~l~fGg~D~~~~~g~l~~~pi~~~---~~~w~v~l~~i~v~~~~~~~~~~----~~~iiDSG 206 (278)
T cd06097 136 LDAPLFTADLRK--AAPGFYTFGYIDESKYKGEISWTPVDNS---SGFWQFTSTSYTVGGDAPWSRSG----FSAIADTG 206 (278)
T ss_pred ccCceEEEEecC--CCCcEEEEeccChHHcCCceEEEEccCC---CcEEEEEEeeEEECCcceeecCC----ceEEeecC
Confidence 2 5899999986 3489999999994 79999999763 56899999999999884332221 45999999
Q ss_pred CcceecChhHHHHHHHHHHHHHhcCCCCCCccccccceeccCCccccCCeEEEEEcCCcEEEeCCCceEEEcCCCeEEEE
Q 017894 245 TVITRLPPHAYTVLKTAFRQLMSKYPTAPAVSILDTCYDFSEHETITIPKISFFFNGGVEVDVDVTGIMFPIRASQVCLA 324 (364)
Q Consensus 245 t~~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~P~i~~~~~g~~~~~i~~~~~~~~~~~~~~C~~ 324 (364)
|+++++|.+++++|.+++.+. .+.... .+|.++|+.. +|+|+|.|
T Consensus 207 Ts~~~lP~~~~~~l~~~l~g~--~~~~~~------~~~~~~C~~~--~P~i~f~~------------------------- 251 (278)
T cd06097 207 TTLILLPDAIVEAYYSQVPGA--YYDSEY------GGWVFPCDTT--LPDLSFAV------------------------- 251 (278)
T ss_pred CchhcCCHHHHHHHHHhCcCC--cccCCC------CEEEEECCCC--CCCEEEEE-------------------------
Confidence 999999999999999988432 122211 2588899864 99999998
Q ss_pred EEcCCCCCCeeEecccceeeeEEEEECCCCEEEEEe
Q 017894 325 FAGNSDPSDVGIFGNVQQHTLEVVYDVAHGQVGFAA 360 (364)
Q Consensus 325 ~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~rigfa~ 360 (364)
.||||.+|||++|+|||++++|||||+
T Consensus 252 ---------~~ilGd~fl~~~y~vfD~~~~~ig~A~ 278 (278)
T cd06097 252 ---------FSILGDVFLKAQYVVFDVGGPKLGFAP 278 (278)
T ss_pred ---------EEEEcchhhCceeEEEcCCCceeeecC
Confidence 699999999999999999999999996
No 21
>PF00026 Asp: Eukaryotic aspartyl protease The Prosite entry also includes Pfam:PF00077.; InterPro: IPR001461 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to MEROPS peptidase family A1 (pepsin family, clan AA). The type example is pepsin A from Homo sapiens (Human) . More than 70 aspartic peptidases, from all from eukaryotic organisms, have been identified. These include pepsins, cathepsins, and renins. The enzymes are synthesised with signal peptides, and the proenzymes are secreted or passed into the lysosomal/endosomal system, where acidification leads to autocatalytic activation. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residues in both the P1 and P1' positions []. Crystallography has shown the active site to form a groove across the junction of the two lobes, with an extended loop projecting over the cleft to form an 11-residue flap, which encloses substrates and inhibitors within the active site []. Specificity is determined by several hydrophobic residues surrounding the catalytic aspartates, and by three residues in the flap. Cysteine residues are well conserved within the pepsin family, pepsin itself containing three disulphide loops. The first loop is found in all but the fungal enzymes, and is usually around five residues in length, but is longer in barrierpepsin and candidapepsin; the second loop is also small and found only in the animal enzymes; and the third loop is the largest, found in all members of the family, except for the cysteine-free polyporopepsin. The loops are spread unequally throughout the two lobes, suggesting that they formed after the initial gene duplication and fusion event []. This family does not include the retroviral nor retrotransposon aspartic proteases which are much smaller and appear to be homologous to the single domain aspartic proteases.; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 1CZI_E 3CMS_A 1CMS_A 4CMS_A 1YG9_A 2NR6_A 3LIZ_A 1FLH_A 3UTL_A 1QRP_E ....
Probab=100.00 E-value=1.7e-49 Score=367.97 Aligned_cols=295 Identities=28% Similarity=0.480 Sum_probs=247.7
Q ss_pred cEEEEEEeCCCCcEEEEEEEcCCcceeEeCCCcccCcCCCCCCCCCCCCCCcccccCCCCCccCCcccCCCCCCCCCCCC
Q 017894 21 NYIVTVGIGTPKRKFSLIFDTGSDLTWTQCKPCVGFCYQQKEKIFDPKRSKSYRNVSCSSTVCSSLESATGNIPGCASNK 100 (364)
Q Consensus 21 ~y~~~i~iGtP~q~~~~~~DTgS~~~wv~~~~c~~~c~~~~~~~y~~s~Sst~~~~~~~~~~c~~~~~~~~~~~~c~~~~ 100 (364)
.|+++|.||||+|+++|++||||+++||++..|...|....+..|++++|++++..
T Consensus 1 ~Y~~~v~iGtp~q~~~~~iDTGS~~~wv~~~~c~~~~~~~~~~~y~~~~S~t~~~~------------------------ 56 (317)
T PF00026_consen 1 QYYINVTIGTPPQTFRVLIDTGSSDTWVPSSNCNSCSSCASSGFYNPSKSSTFSNQ------------------------ 56 (317)
T ss_dssp EEEEEEEETTTTEEEEEEEETTBSSEEEEBTTECSHTHHCTSC-BBGGGSTTEEEE------------------------
T ss_pred CeEEEEEECCCCeEEEEEEecccceeeeceeccccccccccccccccccccccccc------------------------
Confidence 49999999999999999999999999999999855312234489999999999986
Q ss_pred cceeeEEeCCCCceEEEEEEEEEEecCCCccCCeEEeeccCCCCC---CCCcCeEEecCCCC-------ChhHHHhhhhc
Q 017894 101 TCVYGIQYGDSSFSVGFFAKETLTLTSKDVFPKFLLGCGQNNRGL---FRGAAGLLGLGRNK-------ISLVYQTASKY 170 (364)
Q Consensus 101 ~~~~~~~y~~g~~~~G~~~~D~v~i~~~~~~~~~~fg~a~~~~~~---~~~~~GilGLg~~~-------~s~~~q~~~~~ 170 (364)
.+.+.+.|++|. ++|.++.|+++|++ ..+.++.||.+....+. ....+||||||++. .+++.++..+.
T Consensus 57 ~~~~~~~y~~g~-~~G~~~~D~v~ig~-~~~~~~~f~~~~~~~~~~~~~~~~~GilGLg~~~~~~~~~~~~~~~~l~~~g 134 (317)
T PF00026_consen 57 GKPFSISYGDGS-VSGNLVSDTVSIGG-LTIPNQTFGLADSYSGDPFSPIPFDGILGLGFPSLSSSSTYPTFLDQLVQQG 134 (317)
T ss_dssp EEEEEEEETTEE-EEEEEEEEEEEETT-EEEEEEEEEEEEEEESHHHHHSSSSEEEE-SSGGGSGGGTS-SHHHHHHHTT
T ss_pred eeeeeeeccCcc-cccccccceEeeee-ccccccceeccccccccccccccccccccccCCcccccccCCcceecchhhc
Confidence 478999999998 99999999999999 69999999999996442 34789999999753 45677777663
Q ss_pred ---CCcEEEeCCCCCCCceeEEeCCCCC----CCceEeecccCCCCCcceEEEeeEEEECCEEeeeccccCCCCCEEEec
Q 017894 171 ---KKRFSYCLPSSSSSTGHLTFGPGIK----KSVKFTPLSSAFQGSSFYGLDMTGISVGGEKLPIATTVFSTPGTIIDS 243 (364)
Q Consensus 171 ---~~~fsl~l~~~~~~~g~l~fGg~d~----~~l~~~p~~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~~~aiiDt 243 (364)
+++||++|.+.....|.|+|||+|+ ++++|+|+.. ..+|.+.+++|.++++....... ..++|||
T Consensus 135 ~i~~~~fsl~l~~~~~~~g~l~~Gg~d~~~~~g~~~~~~~~~----~~~w~v~~~~i~i~~~~~~~~~~----~~~~~Dt 206 (317)
T PF00026_consen 135 LISSNVFSLYLNPSDSQNGSLTFGGYDPSKYDGDLVWVPLVS----SGYWSVPLDSISIGGESVFSSSG----QQAILDT 206 (317)
T ss_dssp SSSSSEEEEEEESTTSSEEEEEESSEEGGGEESEEEEEEBSS----TTTTEEEEEEEEETTEEEEEEEE----EEEEEET
T ss_pred cccccccceeeeecccccchheeeccccccccCceeccCccc----ccccccccccccccccccccccc----eeeeccc
Confidence 7899999998765689999999884 6899999996 78999999999999994332322 2399999
Q ss_pred CCcceecChhHHHHHHHHHHHHHhcCCCCCCccccccceeccCCccccCCeEEEEEcCCcEEEeCCCceEEEcCC--CeE
Q 017894 244 GTVITRLPPHAYTVLKTAFRQLMSKYPTAPAVSILDTCYDFSEHETITIPKISFFFNGGVEVDVDVTGIMFPIRA--SQV 321 (364)
Q Consensus 244 gt~~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~P~i~~~~~g~~~~~i~~~~~~~~~~~--~~~ 321 (364)
|++++.||.+++++|++++.+.... ..+.++|.....+|.|+|.| ++.+++|+|++|+.+... ...
T Consensus 207 gt~~i~lp~~~~~~i~~~l~~~~~~-----------~~~~~~c~~~~~~p~l~f~~-~~~~~~i~~~~~~~~~~~~~~~~ 274 (317)
T PF00026_consen 207 GTSYIYLPRSIFDAIIKALGGSYSD-----------GVYSVPCNSTDSLPDLTFTF-GGVTFTIPPSDYIFKIEDGNGGY 274 (317)
T ss_dssp TBSSEEEEHHHHHHHHHHHTTEEEC-----------SEEEEETTGGGGSEEEEEEE-TTEEEEEEHHHHEEEESSTTSSE
T ss_pred ccccccccchhhHHHHhhhcccccc-----------eeEEEecccccccceEEEee-CCEEEEecchHhcccccccccce
Confidence 9999999999999999999988332 35889999888899999999 789999999999998543 348
Q ss_pred EE-EEEcC--CCCCCeeEecccceeeeEEEEECCCCEEEEEeC
Q 017894 322 CL-AFAGN--SDPSDVGIFGNVQQHTLEVVYDVAHGQVGFAAG 361 (364)
Q Consensus 322 C~-~~~~~--~~~~~~~ilG~~fl~~~y~vfD~~~~rigfa~~ 361 (364)
|+ .|... ......+|||.+|||++|++||++++|||||+|
T Consensus 275 C~~~i~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~~ig~A~a 317 (317)
T PF00026_consen 275 CYLGIQPMDSSDDSDDWILGSPFLRNYYVVFDYENNRIGFAQA 317 (317)
T ss_dssp EEESEEEESSTTSSSEEEEEHHHHTTEEEEEETTTTEEEEEEE
T ss_pred eEeeeecccccccCCceEecHHHhhceEEEEeCCCCEEEEecC
Confidence 97 55552 245678999999999999999999999999997
No 22
>cd05474 SAP_like SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins. SAPs (Secreted aspartic proteinases) are secreted from a group of pathogenic fungi, predominantly Candida species. They are secreted from the pathogen to degrade host proteins. SAP is one of the most significant extracellular hydrolytic enzymes produced by C. albicans. SAP proteins, encoded by a family of 10 SAP genes. All 10 SAP genes of C. albicans encode preproenzymes, approximately 60 amino acid longer than the mature enzyme, which are processed when transported via the secretory pathway. The mature enzymes contain sequence motifs typical for all aspartyl proteinases, including the two conserved aspartate residues other active site and conserved cysteine residues implicated in the maintenance of the three-dimensional structure. Most Sap proteins contain putative N-glycosylation sites, but it remains to be determined which Sap proteins are glycosylated. This family of aspartate proteases
Probab=100.00 E-value=3.6e-47 Score=348.97 Aligned_cols=270 Identities=21% Similarity=0.395 Sum_probs=225.3
Q ss_pred ccEEEEEEeCCCCcEEEEEEEcCCcceeEeCCCcccCcCCCCCCCCCCCCCCcccccCCCCCccCCcccCCCCCCCCCCC
Q 017894 20 GNYIVTVGIGTPKRKFSLIFDTGSDLTWTQCKPCVGFCYQQKEKIFDPKRSKSYRNVSCSSTVCSSLESATGNIPGCASN 99 (364)
Q Consensus 20 ~~y~~~i~iGtP~q~~~~~~DTgS~~~wv~~~~c~~~c~~~~~~~y~~s~Sst~~~~~~~~~~c~~~~~~~~~~~~c~~~ 99 (364)
.+|+++|.||||+|++.|++||||+++||+
T Consensus 1 ~~Y~~~i~iGtp~q~~~v~~DTgS~~~wv~-------------------------------------------------- 30 (295)
T cd05474 1 TYYSAELSVGTPPQKVTVLLDTGSSDLWVP-------------------------------------------------- 30 (295)
T ss_pred CeEEEEEEECCCCcEEEEEEeCCCCcceee--------------------------------------------------
Confidence 379999999999999999999999999995
Q ss_pred CcceeeEEeCCCCceEEEEEEEEEEecCCCccCCeEEeeccCCCCCCCCcCeEEecCCCCC-----------hhHHHhhh
Q 017894 100 KTCVYGIQYGDSSFSVGFFAKETLTLTSKDVFPKFLLGCGQNNRGLFRGAAGLLGLGRNKI-----------SLVYQTAS 168 (364)
Q Consensus 100 ~~~~~~~~y~~g~~~~G~~~~D~v~i~~~~~~~~~~fg~a~~~~~~~~~~~GilGLg~~~~-----------s~~~q~~~ 168 (364)
.|.+.|++|+.+.|.+++|++++++ ..++++.||++.... ..+||||||+... +++.|+..
T Consensus 31 ---~~~~~Y~~g~~~~G~~~~D~v~~g~-~~~~~~~fg~~~~~~----~~~GilGLg~~~~~~~~~~~~~~~s~~~~L~~ 102 (295)
T cd05474 31 ---DFSISYGDGTSASGTWGTDTVSIGG-ATVKNLQFAVANSTS----SDVGVLGIGLPGNEATYGTGYTYPNFPIALKK 102 (295)
T ss_pred ---eeEEEeccCCcEEEEEEEEEEEECC-eEecceEEEEEecCC----CCcceeeECCCCCcccccCCCcCCCHHHHHHH
Confidence 2477899976799999999999999 589999999999853 4789999999875 68888876
Q ss_pred hc---CCcEEEeCCCCCCCceeEEeCCCCC----CCceEeecccCCC--CCcceEEEeeEEEECCEEeeeccccCCCCCE
Q 017894 169 KY---KKRFSYCLPSSSSSTGHLTFGPGIK----KSVKFTPLSSAFQ--GSSFYGLDMTGISVGGEKLPIATTVFSTPGT 239 (364)
Q Consensus 169 ~~---~~~fsl~l~~~~~~~g~l~fGg~d~----~~l~~~p~~~~~~--~~~~w~v~l~~i~v~~~~~~~~~~~~~~~~a 239 (364)
+. ++.||+||.+.+...|.|+|||+|+ +++.|+|+..++. ...+|.|.+++|+++++.+..+.. -....+
T Consensus 103 ~g~i~~~~Fsl~l~~~~~~~g~l~~Gg~d~~~~~g~~~~~p~~~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~-~~~~~~ 181 (295)
T cd05474 103 QGLIKKNAYSLYLNDLDASTGSILFGGVDTAKYSGDLVTLPIVNDNGGSEPSELSVTLSSISVNGSSGNTTLL-SKNLPA 181 (295)
T ss_pred CCcccceEEEEEeCCCCCCceeEEEeeeccceeeceeEEEeCcCcCCCCCceEEEEEEEEEEEEcCCCccccc-CCCccE
Confidence 53 6899999998655689999999984 6899999988542 237899999999999987642111 111469
Q ss_pred EEecCCcceecChhHHHHHHHHHHHHHhcCCCCCCccccccceeccCCccccCCeEEEEEcCCcEEEeCCCceEEEcC--
Q 017894 240 IIDSGTVITRLPPHAYTVLKTAFRQLMSKYPTAPAVSILDTCYDFSEHETITIPKISFFFNGGVEVDVDVTGIMFPIR-- 317 (364)
Q Consensus 240 iiDtgt~~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~P~i~~~~~g~~~~~i~~~~~~~~~~-- 317 (364)
+|||||++++||.+++++|++++.+... .. ..++..+|..... |+|+|.| ++.+++||+++|+++..
T Consensus 182 iiDSGt~~~~lP~~~~~~l~~~~~~~~~---~~------~~~~~~~C~~~~~-p~i~f~f-~g~~~~i~~~~~~~~~~~~ 250 (295)
T cd05474 182 LLDSGTTLTYLPSDIVDAIAKQLGATYD---SD------EGLYVVDCDAKDD-GSLTFNF-GGATISVPLSDLVLPASTD 250 (295)
T ss_pred EECCCCccEeCCHHHHHHHHHHhCCEEc---CC------CcEEEEeCCCCCC-CEEEEEE-CCeEEEEEHHHhEeccccC
Confidence 9999999999999999999999987632 21 1246777877656 9999999 78999999999999854
Q ss_pred --CCeEEE-EEEcCCCCCCeeEecccceeeeEEEEECCCCEEEEEeC
Q 017894 318 --ASQVCL-AFAGNSDPSDVGIFGNVQQHTLEVVYDVAHGQVGFAAG 361 (364)
Q Consensus 318 --~~~~C~-~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~rigfa~~ 361 (364)
.+..|+ .|...+. +.+|||.+|||++|++||.+++|||||+|
T Consensus 251 ~~~~~~C~~~i~~~~~--~~~iLG~~fl~~~y~vfD~~~~~ig~a~a 295 (295)
T cd05474 251 DGGDGACYLGIQPSTS--DYNILGDTFLRSAYVVYDLDNNEISLAQA 295 (295)
T ss_pred CCCCCCeEEEEEeCCC--CcEEeChHHhhcEEEEEECCCCEEEeecC
Confidence 367896 7776643 57999999999999999999999999997
No 23
>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH. Pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, renin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (renin, cathepsin D and E, pepsin) or commercially (chymosin) important. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residu
Probab=100.00 E-value=7.6e-44 Score=324.83 Aligned_cols=264 Identities=34% Similarity=0.603 Sum_probs=222.3
Q ss_pred EEEEEEeCCCCcEEEEEEEcCCcceeEeCCCcccCcCCCCCCC--CCCCCCCcccccCCCCCccCCcccCCCCCCCCCCC
Q 017894 22 YIVTVGIGTPKRKFSLIFDTGSDLTWTQCKPCVGFCYQQKEKI--FDPKRSKSYRNVSCSSTVCSSLESATGNIPGCASN 99 (364)
Q Consensus 22 y~~~i~iGtP~q~~~~~~DTgS~~~wv~~~~c~~~c~~~~~~~--y~~s~Sst~~~~~~~~~~c~~~~~~~~~~~~c~~~ 99 (364)
|+++|.||+|+|++.|++||||+++||+|..|.. |..+.... |++..|+++...
T Consensus 1 Y~~~i~iGtp~q~~~l~~DTGS~~~wv~~~~c~~-~~~~~~~~~~~~~~~s~~~~~~----------------------- 56 (283)
T cd05471 1 YYGEITIGTPPQKFSVIFDTGSSLLWVPSSNCTS-CSCQKHPRFKYDSSKSSTYKDT----------------------- 56 (283)
T ss_pred CEEEEEECCCCcEEEEEEeCCCCCEEEecCCCCc-cccccCCCCccCccCCceeecC-----------------------
Confidence 7899999999999999999999999999999843 43332233 777777776653
Q ss_pred CcceeeEEeCCCCceEEEEEEEEEEecCCCccCCeEEeeccCCCC--CCCCcCeEEecCCCC------ChhHHHhhhhc-
Q 017894 100 KTCVYGIQYGDSSFSVGFFAKETLTLTSKDVFPKFLLGCGQNNRG--LFRGAAGLLGLGRNK------ISLVYQTASKY- 170 (364)
Q Consensus 100 ~~~~~~~~y~~g~~~~G~~~~D~v~i~~~~~~~~~~fg~a~~~~~--~~~~~~GilGLg~~~------~s~~~q~~~~~- 170 (364)
.|.+.+.|++|. +.|.+++|+|+|++ ..++++.||++..... .....+||||||+.. .++++|+..+.
T Consensus 57 -~~~~~~~Y~~g~-~~g~~~~D~v~~~~-~~~~~~~fg~~~~~~~~~~~~~~~GilGLg~~~~~~~~~~s~~~~l~~~~~ 133 (283)
T cd05471 57 -GCTFSITYGDGS-VTGGLGTDTVTIGG-LTIPNQTFGCATSESGDFSSSGFDGILGLGFPSLSVDGVPSFFDQLKSQGL 133 (283)
T ss_pred -CCEEEEEECCCe-EEEEEEEeEEEECC-EEEeceEEEEEeccCCcccccccceEeecCCcccccccCCCHHHHHHHCCC
Confidence 589999999986 89999999999999 5899999999999864 234889999999988 78999998763
Q ss_pred --CCcEEEeCCCC--CCCceeEEeCCCCC----CCceEeecccCCCCCcceEEEeeEEEECCEEeeeccccCCCCCEEEe
Q 017894 171 --KKRFSYCLPSS--SSSTGHLTFGPGIK----KSVKFTPLSSAFQGSSFYGLDMTGISVGGEKLPIATTVFSTPGTIID 242 (364)
Q Consensus 171 --~~~fsl~l~~~--~~~~g~l~fGg~d~----~~l~~~p~~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~~~aiiD 242 (364)
++.||+||.+. ....|.|+||++|+ +++.|+|+... ...+|.|.+++|++++......... ..++||
T Consensus 134 i~~~~Fs~~l~~~~~~~~~g~l~~Gg~d~~~~~~~~~~~p~~~~--~~~~~~v~l~~i~v~~~~~~~~~~~---~~~iiD 208 (283)
T cd05471 134 ISSPVFSFYLGRDGDGGNGGELTFGGIDPSKYTGDLTYTPVVSN--GPGYWQVPLDGISVGGKSVISSSGG---GGAIVD 208 (283)
T ss_pred CCCCEEEEEEcCCCCCCCCCEEEEcccCccccCCceEEEecCCC--CCCEEEEEeCeEEECCceeeecCCC---cEEEEe
Confidence 69999999975 34589999999985 79999999885 2579999999999999741111111 459999
Q ss_pred cCCcceecChhHHHHHHHHHHHHHhcCCCCCCccccccceeccCCccccCCeEEEEEcCCcEEEeCCCceEEEcCCCeEE
Q 017894 243 SGTVITRLPPHAYTVLKTAFRQLMSKYPTAPAVSILDTCYDFSEHETITIPKISFFFNGGVEVDVDVTGIMFPIRASQVC 322 (364)
Q Consensus 243 tgt~~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~P~i~~~~~g~~~~~i~~~~~~~~~~~~~~C 322 (364)
||+++++||.+++++|++++.+.... ...|+..+|.....+|+|+|+|
T Consensus 209 sGt~~~~lp~~~~~~l~~~~~~~~~~---------~~~~~~~~~~~~~~~p~i~f~f----------------------- 256 (283)
T cd05471 209 SGTSLIYLPSSVYDAILKALGAAVSS---------SDGGYGVDCSPCDTLPDITFTF----------------------- 256 (283)
T ss_pred cCCCCEeCCHHHHHHHHHHhCCcccc---------cCCcEEEeCcccCcCCCEEEEE-----------------------
Confidence 99999999999999999999988432 2346777788888999999999
Q ss_pred EEEEcCCCCCCeeEecccceeeeEEEEECCCCEEEEEe
Q 017894 323 LAFAGNSDPSDVGIFGNVQQHTLEVVYDVAHGQVGFAA 360 (364)
Q Consensus 323 ~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~rigfa~ 360 (364)
.+|||.+|||++|++||.+++|||||+
T Consensus 257 -----------~~ilG~~fl~~~y~vfD~~~~~igfa~ 283 (283)
T cd05471 257 -----------LWILGDVFLRNYYTVFDLDNNRIGFAP 283 (283)
T ss_pred -----------EEEccHhhhhheEEEEeCCCCEEeecC
Confidence 699999999999999999999999985
No 24
>PF14543 TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A 3VLB_A 3VLA_A 3AUP_D 1T6G_A 1T6E_X 2B42_A.
Probab=99.96 E-value=7.5e-29 Score=206.57 Aligned_cols=159 Identities=54% Similarity=0.941 Sum_probs=130.0
Q ss_pred EEEEEEeCCCCcEEEEEEEcCCcceeEeCCCcccCcCCCCCCCCCCCCCCcccccCCCCCccCCcccCCCCCCCCCCCCc
Q 017894 22 YIVTVGIGTPKRKFSLIFDTGSDLTWTQCKPCVGFCYQQKEKIFDPKRSKSYRNVSCSSTVCSSLESATGNIPGCASNKT 101 (364)
Q Consensus 22 y~~~i~iGtP~q~~~~~~DTgS~~~wv~~~~c~~~c~~~~~~~y~~s~Sst~~~~~~~~~~c~~~~~~~~~~~~c~~~~~ 101 (364)
|+++|.||||+|++.|++||||..+|++| ..+.|+|++|+||+.++|.++.|...++. ....|..++.
T Consensus 1 Y~~~~~iGtP~~~~~lvvDtgs~l~W~~C----------~~~~f~~~~Sst~~~v~C~s~~C~~~~~~--~~~~~~~~~~ 68 (164)
T PF14543_consen 1 YYVSVSIGTPPQPFSLVVDTGSDLTWVQC----------PDPPFDPSKSSTYRPVPCSSPQCSSAPSF--CPCCCCSNNS 68 (164)
T ss_dssp EEEEEECTCTTEEEEEEEETT-SSEEEET--------------STT-TTSSBEC-BTTSHHHHHCTSS--BTCCTCESSE
T ss_pred CEEEEEeCCCCceEEEEEECCCCceEEcC----------CCcccCCccCCcccccCCCCcchhhcccc--cccCCCCcCc
Confidence 88999999999999999999999999987 23889999999999999999999887754 1122344679
Q ss_pred ceeeEEeCCCCceEEEEEEEEEEecCC----CccCCeEEeeccCCCCCCCCcCeEEecCCCCChhHHHhhhhcCCcEEEe
Q 017894 102 CVYGIQYGDSSFSVGFFAKETLTLTSK----DVFPKFLLGCGQNNRGLFRGAAGLLGLGRNKISLVYQTASKYKKRFSYC 177 (364)
Q Consensus 102 ~~~~~~y~~g~~~~G~~~~D~v~i~~~----~~~~~~~fg~a~~~~~~~~~~~GilGLg~~~~s~~~q~~~~~~~~fsl~ 177 (364)
|.|.+.|.++..+.|.+++|++.++.. ..+.++.|||+....+.+...+||||||+.++||+.|+.....+.||+|
T Consensus 69 C~y~~~y~~~s~~~G~l~~D~~~~~~~~~~~~~~~~~~FGC~~~~~g~~~~~~GilGLg~~~~Sl~sQl~~~~~~~FSyC 148 (164)
T PF14543_consen 69 CPYSQSYGDGSSSSGFLASDTLTFGSSSGGSNSVPDFIFGCATSNSGLFYGADGILGLGRGPLSLPSQLASSSGNKFSYC 148 (164)
T ss_dssp EEEEEEETTTEEEEEEEEEEEEEEEEESSSSEEEEEEEEEEE-GGGTSSTTEEEEEE-SSSTTSHHHHHHHH--SEEEEE
T ss_pred ccceeecCCCccccCceEEEEEEecCCCCCCceeeeEEEEeeeccccCCcCCCcccccCCCcccHHHHHHHhcCCeEEEE
Confidence 999999999988999999999999873 2467899999999988778999999999999999999977667899999
Q ss_pred CCC-CCCCceeEEeCC
Q 017894 178 LPS-SSSSTGHLTFGP 192 (364)
Q Consensus 178 l~~-~~~~~g~l~fGg 192 (364)
|.+ .....|.|+||+
T Consensus 149 L~~~~~~~~g~l~fG~ 164 (164)
T PF14543_consen 149 LPSSSPSSSGFLSFGD 164 (164)
T ss_dssp B-S-SSSSEEEEEECS
T ss_pred CCCCCCCCCEEEEeCc
Confidence 998 455699999996
No 25
>PF14541 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 3HD8_A 1T6G_A 1T6E_X 2B42_A 3VLB_A 3VLA_A.
Probab=99.92 E-value=4.9e-24 Score=177.49 Aligned_cols=149 Identities=40% Similarity=0.740 Sum_probs=120.6
Q ss_pred ceEEEeeEEEECCEEeeeccccC----CCCCEEEecCCcceecChhHHHHHHHHHHHHHhcCC--C-CCCccccccceec
Q 017894 212 FYGLDMTGISVGGEKLPIATTVF----STPGTIIDSGTVITRLPPHAYTVLKTAFRQLMSKYP--T-APAVSILDTCYDF 284 (364)
Q Consensus 212 ~w~v~l~~i~v~~~~~~~~~~~~----~~~~aiiDtgt~~~~lp~~~~~~l~~~l~~~~~~~~--~-~~~~~~~~~c~~~ 284 (364)
+|.|+|.+|+|+++++.++...| ..+.++|||||++++||+++|++|.+++...+.... + ......++.||..
T Consensus 1 ~Y~v~l~~Isvg~~~l~~~~~~~~~~~~~g~~iiDSGT~~T~L~~~~y~~l~~al~~~~~~~~~~~~~~~~~~~~~Cy~~ 80 (161)
T PF14541_consen 1 FYYVNLTGISVGGKRLPIPPSVFQLSDGSGGTIIDSGTTYTYLPPPVYDALVQALDAQMGAPGVSREAPPFSGFDLCYNL 80 (161)
T ss_dssp SEEEEEEEEEETTEEE---TTCSCETTSTCSEEE-SSSSSEEEEHHHHHHHHHHHHHHHHTCT--CEE---TT-S-EEEG
T ss_pred CccEEEEEEEECCEEecCChHHhhccCCCCCEEEECCCCccCCcHHHHHHHHHHHHHHhhhcccccccccCCCCCceeec
Confidence 48999999999999999888876 347899999999999999999999999999987543 1 2345677899999
Q ss_pred cC----CccccCCeEEEEEcCCcEEEeCCCceEEEcCCCeEEEEEEcC-CCCCCeeEecccceeeeEEEEECCCCEEEEE
Q 017894 285 SE----HETITIPKISFFFNGGVEVDVDVTGIMFPIRASQVCLAFAGN-SDPSDVGIFGNVQQHTLEVVYDVAHGQVGFA 359 (364)
Q Consensus 285 ~~----~~~~~~P~i~~~~~g~~~~~i~~~~~~~~~~~~~~C~~~~~~-~~~~~~~ilG~~fl~~~y~vfD~~~~rigfa 359 (364)
+. .....+|+|+|+|.+|++++|++++|++....+..|++|... ....+..|||..+|+++.++||++++||||+
T Consensus 81 ~~~~~~~~~~~~P~i~l~F~~ga~l~l~~~~y~~~~~~~~~Cla~~~~~~~~~~~~viG~~~~~~~~v~fDl~~~~igF~ 160 (161)
T PF14541_consen 81 SSFGVNRDWAKFPTITLHFEGGADLTLPPENYFVQVSPGVFCLAFVPSDADDDGVSVIGNFQQQNYHVVFDLENGRIGFA 160 (161)
T ss_dssp GCS-EETTEESS--EEEEETTSEEEEE-HHHHEEEECTTEEEESEEEETSTTSSSEEE-HHHCCTEEEEEETTTTEEEEE
T ss_pred cccccccccccCCeEEEEEeCCcceeeeccceeeeccCCCEEEEEEccCCCCCCcEEECHHHhcCcEEEEECCCCEEEEe
Confidence 88 466789999999988999999999999998778999988887 4456779999999999999999999999998
Q ss_pred e
Q 017894 360 A 360 (364)
Q Consensus 360 ~ 360 (364)
+
T Consensus 161 ~ 161 (161)
T PF14541_consen 161 P 161 (161)
T ss_dssp E
T ss_pred C
Confidence 6
No 26
>cd05470 pepsin_retropepsin_like Cellular and retroviral pepsin-like aspartate proteases. This family includes both cellular and retroviral pepsin-like aspartate proteases. The cellular pepsin and pepsin-like enzymes are twice as long as their retroviral counterparts. The cellular pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, rennin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (rennin, cathepsin D and E, pepsin) or commercially (chymosin) important. The eukaryotic pepsin-like proteases contain two domains possessing similar topological features. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except in the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The eukaryotic pepsin-like proteases have two active site
Probab=99.88 E-value=5.1e-22 Score=154.52 Aligned_cols=105 Identities=29% Similarity=0.569 Sum_probs=90.3
Q ss_pred EEEEeCCCCcEEEEEEEcCCcceeEeCCCcccCcCCCCCCCC-CCCCCCcccccCCCCCccCCcccCCCCCCCCCCCCcc
Q 017894 24 VTVGIGTPKRKFSLIFDTGSDLTWTQCKPCVGFCYQQKEKIF-DPKRSKSYRNVSCSSTVCSSLESATGNIPGCASNKTC 102 (364)
Q Consensus 24 ~~i~iGtP~q~~~~~~DTgS~~~wv~~~~c~~~c~~~~~~~y-~~s~Sst~~~~~~~~~~c~~~~~~~~~~~~c~~~~~~ 102 (364)
++|.||||+|++.|+|||||+++||++..|. .|..+....| ++++|++++.. .+
T Consensus 1 ~~i~vGtP~q~~~~~~DTGSs~~Wv~~~~c~-~~~~~~~~~~~~~~~sst~~~~------------------------~~ 55 (109)
T cd05470 1 IEIGIGTPPQTFNVLLDTGSSNLWVPSVDCQ-SLAIYSHSSYDDPSASSTYSDN------------------------GC 55 (109)
T ss_pred CEEEeCCCCceEEEEEeCCCCCEEEeCCCCC-CcccccccccCCcCCCCCCCCC------------------------Cc
Confidence 4799999999999999999999999999884 3443334556 99999998875 57
Q ss_pred eeeEEeCCCCceEEEEEEEEEEecCCCccCCeEEeeccCCCCCC---CCcCeEEec
Q 017894 103 VYGIQYGDSSFSVGFFAKETLTLTSKDVFPKFLLGCGQNNRGLF---RGAAGLLGL 155 (364)
Q Consensus 103 ~~~~~y~~g~~~~G~~~~D~v~i~~~~~~~~~~fg~a~~~~~~~---~~~~GilGL 155 (364)
.+.+.|++|. +.|.++.|+|+|++ ..++++.||++....+.+ ...+|||||
T Consensus 56 ~~~~~Y~~g~-~~g~~~~D~v~ig~-~~~~~~~fg~~~~~~~~~~~~~~~~GilGL 109 (109)
T cd05470 56 TFSITYGTGS-LSGGLSTDTVSIGD-IEVVGQAFGCATDEPGATFLPALFDGILGL 109 (109)
T ss_pred EEEEEeCCCe-EEEEEEEEEEEECC-EEECCEEEEEEEecCCccccccccccccCC
Confidence 8999999996 88999999999999 689999999999986642 478999998
No 27
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=98.15 E-value=1.3e-05 Score=60.07 Aligned_cols=93 Identities=16% Similarity=0.192 Sum_probs=66.1
Q ss_pred ccEEEEEEeCCCCcEEEEEEEcCCcceeEeCCCcccCcCCCCCCCCCCCCCCcccccCCCCCccCCcccCCCCCCCCCCC
Q 017894 20 GNYIVTVGIGTPKRKFSLIFDTGSDLTWTQCKPCVGFCYQQKEKIFDPKRSKSYRNVSCSSTVCSSLESATGNIPGCASN 99 (364)
Q Consensus 20 ~~y~~~i~iGtP~q~~~~~~DTgS~~~wv~~~~c~~~c~~~~~~~y~~s~Sst~~~~~~~~~~c~~~~~~~~~~~~c~~~ 99 (364)
+.|++++.|+ ++++++++|||++.+|+..... ..+. . ....
T Consensus 1 ~~~~v~v~i~--~~~~~~llDTGa~~s~i~~~~~-~~l~-----~-------~~~~------------------------ 41 (96)
T cd05483 1 GHFVVPVTIN--GQPVRFLLDTGASTTVISEELA-ERLG-----L-------PLTL------------------------ 41 (96)
T ss_pred CcEEEEEEEC--CEEEEEEEECCCCcEEcCHHHH-HHcC-----C-------CccC------------------------
Confidence 3588999999 8999999999999999965421 1110 0 0000
Q ss_pred CcceeeEEeCCCCceEEEEEEEEEEecCCCccCCeEEeeccCCCCCCCCcCeEEecC
Q 017894 100 KTCVYGIQYGDSSFSVGFFAKETLTLTSKDVFPKFLLGCGQNNRGLFRGAAGLLGLG 156 (364)
Q Consensus 100 ~~~~~~~~y~~g~~~~G~~~~D~v~i~~~~~~~~~~fg~a~~~~~~~~~~~GilGLg 156 (364)
.....+...+|.........+.+++++ ..++++.+..+..... ..+||||+.
T Consensus 42 -~~~~~~~~~~G~~~~~~~~~~~i~ig~-~~~~~~~~~v~d~~~~---~~~gIlG~d 93 (96)
T cd05483 42 -GGKVTVQTANGRVRAARVRLDSLQIGG-ITLRNVPAVVLPGDAL---GVDGLLGMD 93 (96)
T ss_pred -CCcEEEEecCCCccceEEEcceEEECC-cEEeccEEEEeCCccc---CCceEeChH
Confidence 234556667776566666689999999 5888888888776543 579999985
No 28
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=97.25 E-value=0.0024 Score=50.13 Aligned_cols=101 Identities=13% Similarity=0.146 Sum_probs=66.0
Q ss_pred cccccCCccCCccEEEEEEeCCCCcEEEEEEEcCCcceeEeCCCcccCcCCCCCCCCCCCCCCcccccCCCCCccCCccc
Q 017894 9 LPAIHGSVVGSGNYIVTVGIGTPKRKFSLIFDTGSDLTWTQCKPCVGFCYQQKEKIFDPKRSKSYRNVSCSSTVCSSLES 88 (364)
Q Consensus 9 ~p~~~~~~~~~~~y~~~i~iGtP~q~~~~~~DTgS~~~wv~~~~c~~~c~~~~~~~y~~s~Sst~~~~~~~~~~c~~~~~ 88 (364)
+|++ ...++.|++++.|. ++++.+++|||++.+-+....... -..++...
T Consensus 2 ~~i~---~~~~g~~~v~~~In--G~~~~flVDTGAs~t~is~~~A~~-------Lgl~~~~~------------------ 51 (121)
T TIGR02281 2 VQLA---KDGDGHFYATGRVN--GRNVRFLVDTGATSVALNEEDAQR-------LGLDLNRL------------------ 51 (121)
T ss_pred EEEE---EcCCCeEEEEEEEC--CEEEEEEEECCCCcEEcCHHHHHH-------cCCCcccC------------------
Confidence 4555 33678899999998 789999999999999885432100 11111100
Q ss_pred CCCCCCCCCCCCcceeeEEeCCCCceEEEEEEEEEEecCCCccCCeEEeeccCCCCCCCCcCeEEecC
Q 017894 89 ATGNIPGCASNKTCVYGIQYGDSSFSVGFFAKETLTLTSKDVFPKFLLGCGQNNRGLFRGAAGLLGLG 156 (364)
Q Consensus 89 ~~~~~~~c~~~~~~~~~~~y~~g~~~~G~~~~D~v~i~~~~~~~~~~fg~a~~~~~~~~~~~GilGLg 156 (364)
.....+.-..|......+.-|.+++|+ ...+|+...++..... .+|+||+.
T Consensus 52 ------------~~~~~~~ta~G~~~~~~~~l~~l~iG~-~~~~nv~~~v~~~~~~----~~~LLGm~ 102 (121)
T TIGR02281 52 ------------GYTVTVSTANGQIKAARVTLDRVAIGG-IVVNDVDAMVAEGGAL----SESLLGMS 102 (121)
T ss_pred ------------CceEEEEeCCCcEEEEEEEeCEEEECC-EEEeCcEEEEeCCCcC----CceEcCHH
Confidence 123344445565334456889999999 6999999877754321 37999984
No 29
>PF13650 Asp_protease_2: Aspartyl protease
Probab=96.64 E-value=0.015 Score=42.61 Aligned_cols=88 Identities=14% Similarity=0.168 Sum_probs=54.0
Q ss_pred EEEEeCCCCcEEEEEEEcCCcceeEeCCCcccCcCCCCCCCCCCCCCCcccccCCCCCccCCcccCCCCCCCCCCCCcce
Q 017894 24 VTVGIGTPKRKFSLIFDTGSDLTWTQCKPCVGFCYQQKEKIFDPKRSKSYRNVSCSSTVCSSLESATGNIPGCASNKTCV 103 (364)
Q Consensus 24 ~~i~iGtP~q~~~~~~DTgS~~~wv~~~~c~~~c~~~~~~~y~~s~Sst~~~~~~~~~~c~~~~~~~~~~~~c~~~~~~~ 103 (364)
+++.|+ ++++++++|||++.+.+...-+.. ........ ...
T Consensus 1 V~v~vn--g~~~~~liDTGa~~~~i~~~~~~~-------l~~~~~~~------------------------------~~~ 41 (90)
T PF13650_consen 1 VPVKVN--GKPVRFLIDTGASISVISRSLAKK-------LGLKPRPK------------------------------SVP 41 (90)
T ss_pred CEEEEC--CEEEEEEEcCCCCcEEECHHHHHH-------cCCCCcCC------------------------------cee
Confidence 367787 789999999999988885432211 00111000 012
Q ss_pred eeEEeCCCCceEEEEEEEEEEecCCCccCCeEEeeccCCCCCCCCcCeEEec
Q 017894 104 YGIQYGDSSFSVGFFAKETLTLTSKDVFPKFLLGCGQNNRGLFRGAAGLLGL 155 (364)
Q Consensus 104 ~~~~y~~g~~~~G~~~~D~v~i~~~~~~~~~~fg~a~~~~~~~~~~~GilGL 155 (364)
..+.-.+|.........+.+++++ ..+.++.|-..... ...+||||+
T Consensus 42 ~~~~~~~g~~~~~~~~~~~i~ig~-~~~~~~~~~v~~~~----~~~~~iLG~ 88 (90)
T PF13650_consen 42 ISVSGAGGSVTVYRGRVDSITIGG-ITLKNVPFLVVDLG----DPIDGILGM 88 (90)
T ss_pred EEEEeCCCCEEEEEEEEEEEEECC-EEEEeEEEEEECCC----CCCEEEeCC
Confidence 233334454345556667899999 58888887777722 246899997
No 30
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=95.86 E-value=0.093 Score=41.29 Aligned_cols=26 Identities=12% Similarity=0.015 Sum_probs=23.1
Q ss_pred CeeEecccceeeeEEEEECCCCEEEE
Q 017894 333 DVGIFGNVQQHTLEVVYDVAHGQVGF 358 (364)
Q Consensus 333 ~~~ilG~~fl~~~y~vfD~~~~rigf 358 (364)
...|||..||+.+-.+.|+.+.+|-|
T Consensus 99 ~d~ILG~d~L~~~~~~ID~~~~~i~~ 124 (124)
T cd05479 99 VDFLIGLDMLKRHQCVIDLKENVLRI 124 (124)
T ss_pred cCEEecHHHHHhCCeEEECCCCEEEC
Confidence 34799999999999999999999854
No 31
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=95.50 E-value=0.12 Score=40.66 Aligned_cols=33 Identities=15% Similarity=0.121 Sum_probs=28.0
Q ss_pred cCCccEEEEEEeCCCCcEEEEEEEcCCcceeEeCC
Q 017894 17 VGSGNYIVTVGIGTPKRKFSLIFDTGSDLTWTQCK 51 (364)
Q Consensus 17 ~~~~~y~~~i~iGtP~q~~~~~~DTgS~~~wv~~~ 51 (364)
.....+++++.|+ ++++++++|||++.+++...
T Consensus 12 ~~~~~~~v~~~In--g~~~~~LvDTGAs~s~Is~~ 44 (124)
T cd05479 12 GKVPMLYINVEIN--GVPVKAFVDSGAQMTIMSKA 44 (124)
T ss_pred ceeeEEEEEEEEC--CEEEEEEEeCCCceEEeCHH
Confidence 3456788999999 89999999999999999543
No 32
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=95.48 E-value=0.24 Score=38.80 Aligned_cols=36 Identities=17% Similarity=0.240 Sum_probs=29.6
Q ss_pred CcceEEEeeEEEECCEEeeeccccCCCCCEEEecCCcceecChhHHHHH
Q 017894 210 SSFYGLDMTGISVGGEKLPIATTVFSTPGTIIDSGTVITRLPPHAYTVL 258 (364)
Q Consensus 210 ~~~w~v~l~~i~v~~~~~~~~~~~~~~~~aiiDtgt~~~~lp~~~~~~l 258 (364)
.++|.++ +++||+++. ++||||++.+.++.+..+++
T Consensus 9 ~g~~~v~---~~InG~~~~----------flVDTGAs~t~is~~~A~~L 44 (121)
T TIGR02281 9 DGHFYAT---GRVNGRNVR----------FLVDTGATSVALNEEDAQRL 44 (121)
T ss_pred CCeEEEE---EEECCEEEE----------EEEECCCCcEEcCHHHHHHc
Confidence 5667666 678888554 99999999999999988775
No 33
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family. Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.
Probab=94.65 E-value=0.14 Score=39.06 Aligned_cols=23 Identities=17% Similarity=0.228 Sum_probs=20.4
Q ss_pred eeEecccceeeeEEEEECCCCEE
Q 017894 334 VGIFGNVQQHTLEVVYDVAHGQV 356 (364)
Q Consensus 334 ~~ilG~~fl~~~y~vfD~~~~ri 356 (364)
..+||..||+.+-++.|+.++++
T Consensus 85 ~~LLG~~~L~~l~l~id~~~~~~ 107 (107)
T TIGR03698 85 EPLLGTELLEGLGIVIDYRNQGL 107 (107)
T ss_pred ccEecHHHHhhCCEEEehhhCcC
Confidence 58999999999999999987653
No 34
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=94.19 E-value=0.23 Score=42.01 Aligned_cols=79 Identities=8% Similarity=0.069 Sum_probs=56.8
Q ss_pred cCCccEEEEEEeCCCCcEEEEEEEcCCcceeEeCCCcccCcCCCCCCCCCCCCCCcccccCCCCCccCCcccCCCCCCCC
Q 017894 17 VGSGNYIVTVGIGTPKRKFSLIFDTGSDLTWTQCKPCVGFCYQQKEKIFDPKRSKSYRNVSCSSTVCSSLESATGNIPGC 96 (364)
Q Consensus 17 ~~~~~y~~~i~iGtP~q~~~~~~DTgS~~~wv~~~~c~~~c~~~~~~~y~~s~Sst~~~~~~~~~~c~~~~~~~~~~~~c 96 (364)
..+|.|.++..|. +|++++++|||.+.+-+...+. .+-.++....
T Consensus 101 ~~~GHF~a~~~VN--Gk~v~fLVDTGATsVal~~~dA-------~RlGid~~~l-------------------------- 145 (215)
T COG3577 101 SRDGHFEANGRVN--GKKVDFLVDTGATSVALNEEDA-------RRLGIDLNSL-------------------------- 145 (215)
T ss_pred cCCCcEEEEEEEC--CEEEEEEEecCcceeecCHHHH-------HHhCCCcccc--------------------------
Confidence 3578899999998 9999999999999998865532 1133443211
Q ss_pred CCCCcceeeEEeCCCCceEEEEEEEEEEecCCCccCCeE
Q 017894 97 ASNKTCVYGIQYGDSSFSVGFFAKETLTLTSKDVFPKFL 135 (364)
Q Consensus 97 ~~~~~~~~~~~y~~g~~~~G~~~~D~v~i~~~~~~~~~~ 135 (364)
+.++.+.-..|......+-.|.+.||+ +..+++.
T Consensus 146 ----~y~~~v~TANG~~~AA~V~Ld~v~IG~-I~~~nV~ 179 (215)
T COG3577 146 ----DYTITVSTANGRARAAPVTLDRVQIGG-IRVKNVD 179 (215)
T ss_pred ----CCceEEEccCCccccceEEeeeEEEcc-EEEcCch
Confidence 234556667787555668899999999 6776655
No 35
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=93.23 E-value=0.52 Score=34.65 Aligned_cols=30 Identities=27% Similarity=0.464 Sum_probs=26.4
Q ss_pred EEEECCEEeeeccccCCCCCEEEecCCcceecChhHHHHH
Q 017894 219 GISVGGEKLPIATTVFSTPGTIIDSGTVITRLPPHAYTVL 258 (364)
Q Consensus 219 ~i~v~~~~~~~~~~~~~~~~aiiDtgt~~~~lp~~~~~~l 258 (364)
.+.|||+++. +.+|||++...++.+.+.++
T Consensus 4 ~~~Ing~~i~----------~lvDTGA~~svis~~~~~~l 33 (91)
T cd05484 4 TLLVNGKPLK----------FQLDTGSAITVISEKTWRKL 33 (91)
T ss_pred EEEECCEEEE----------EEEcCCcceEEeCHHHHHHh
Confidence 3788999875 99999999999999999876
No 36
>PF08284 RVP_2: Retroviral aspartyl protease; InterPro: IPR013242 This region defines single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). These proteases are generally part of a larger polyprotein; usually pol, more rarely gag. Retroviral proteases appear to be homologous to a single domain of the two-domain eukaryotic aspartyl proteases.
Probab=93.17 E-value=0.28 Score=39.19 Aligned_cols=28 Identities=25% Similarity=0.112 Sum_probs=25.5
Q ss_pred eeEecccceeeeEEEEECCCCEEEEEeC
Q 017894 334 VGIFGNVQQHTLEVVYDVAHGQVGFAAG 361 (364)
Q Consensus 334 ~~ilG~~fl~~~y~vfD~~~~rigfa~~ 361 (364)
..|||.++|+.+....|..+++|-|...
T Consensus 105 DvILGm~WL~~~~~~IDw~~k~v~f~~p 132 (135)
T PF08284_consen 105 DVILGMDWLKKHNPVIDWATKTVTFNSP 132 (135)
T ss_pred eeEeccchHHhCCCEEEccCCEEEEeCC
Confidence 4899999999999999999999999753
No 37
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=93.05 E-value=0.12 Score=38.15 Aligned_cols=28 Identities=29% Similarity=0.329 Sum_probs=25.0
Q ss_pred EEEEEEeCCCCcEEEEEEEcCCcceeEeCC
Q 017894 22 YIVTVGIGTPKRKFSLIFDTGSDLTWTQCK 51 (364)
Q Consensus 22 y~~~i~iGtP~q~~~~~~DTgS~~~wv~~~ 51 (364)
|++.+.|+ ++++++++||||+.+++...
T Consensus 1 ~~~~~~In--g~~i~~lvDTGA~~svis~~ 28 (91)
T cd05484 1 KTVTLLVN--GKPLKFQLDTGSAITVISEK 28 (91)
T ss_pred CEEEEEEC--CEEEEEEEcCCcceEEeCHH
Confidence 47889999 89999999999999999654
No 38
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=91.34 E-value=0.36 Score=33.86 Aligned_cols=34 Identities=24% Similarity=0.306 Sum_probs=29.1
Q ss_pred cCCccEEEEEEeCCCCcEEEEEEEcCCcceeEeCCC
Q 017894 17 VGSGNYIVTVGIGTPKRKFSLIFDTGSDLTWTQCKP 52 (364)
Q Consensus 17 ~~~~~y~~~i~iGtP~q~~~~~~DTgS~~~wv~~~~ 52 (364)
...+.+++++.|| ++.+..++|||++...|+...
T Consensus 4 ~~~g~~~v~~~I~--g~~~~alvDtGat~~fis~~~ 37 (72)
T PF13975_consen 4 PDPGLMYVPVSIG--GVQVKALVDTGATHNFISESL 37 (72)
T ss_pred ccCCEEEEEEEEC--CEEEEEEEeCCCcceecCHHH
Confidence 3457899999999 799999999999999986553
No 39
>PF13650 Asp_protease_2: Aspartyl protease
Probab=88.67 E-value=0.64 Score=33.65 Aligned_cols=29 Identities=24% Similarity=0.423 Sum_probs=24.6
Q ss_pred EEECCEEeeeccccCCCCCEEEecCCcceecChhHHHHH
Q 017894 220 ISVGGEKLPIATTVFSTPGTIIDSGTVITRLPPHAYTVL 258 (364)
Q Consensus 220 i~v~~~~~~~~~~~~~~~~aiiDtgt~~~~lp~~~~~~l 258 (364)
++|||+++. ++||||++...++++.++++
T Consensus 3 v~vng~~~~----------~liDTGa~~~~i~~~~~~~l 31 (90)
T PF13650_consen 3 VKVNGKPVR----------FLIDTGASISVISRSLAKKL 31 (90)
T ss_pred EEECCEEEE----------EEEcCCCCcEEECHHHHHHc
Confidence 677887654 99999999999999888776
No 40
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=86.65 E-value=1.7 Score=31.77 Aligned_cols=29 Identities=17% Similarity=0.392 Sum_probs=24.2
Q ss_pred EEECCEEeeeccccCCCCCEEEecCCcceecChhHHHHH
Q 017894 220 ISVGGEKLPIATTVFSTPGTIIDSGTVITRLPPHAYTVL 258 (364)
Q Consensus 220 i~v~~~~~~~~~~~~~~~~aiiDtgt~~~~lp~~~~~~l 258 (364)
+.++++++. ++||||++...++.+..+.+
T Consensus 7 v~i~~~~~~----------~llDTGa~~s~i~~~~~~~l 35 (96)
T cd05483 7 VTINGQPVR----------FLLDTGASTTVISEELAERL 35 (96)
T ss_pred EEECCEEEE----------EEEECCCCcEEcCHHHHHHc
Confidence 677877655 99999999999999877665
No 41
>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Ty3 is a gypsy-type, retrovirus-like, element found in the budding yeast. The Ty3 aspartyl protease is required for processing of the viral polyprotein into its mature species [].
Probab=85.74 E-value=2.6 Score=34.43 Aligned_cols=52 Identities=13% Similarity=0.194 Sum_probs=31.3
Q ss_pred CceEeecccCCCCCcceEEEeeEEEECCEEeeeccccCCCCCEEEecCCcceecChhHHHHH
Q 017894 197 SVKFTPLSSAFQGSSFYGLDMTGISVGGEKLPIATTVFSTPGTIIDSGTVITRLPPHAYTVL 258 (364)
Q Consensus 197 ~l~~~p~~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~~~aiiDtgt~~~~lp~~~~~~l 258 (364)
.+...|++.+......=.+-...+.+.|..+. ++||||++..+.-.++.+.|
T Consensus 16 ~~~~~PIV~~~~~Pevg~T~~v~l~~~~t~i~----------vLfDSGSPTSfIr~di~~kL 67 (177)
T PF12384_consen 16 SITTCPIVHYIAIPEVGKTAIVQLNCKGTPIK----------VLFDSGSPTSFIRSDIVEKL 67 (177)
T ss_pred eeeeeeeEEEeeccccCcEEEEEEeecCcEEE----------EEEeCCCccceeehhhHHhh
Confidence 45556665532111212222233455555544 99999999999998888776
No 42
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=85.66 E-value=1.7 Score=30.38 Aligned_cols=29 Identities=21% Similarity=0.445 Sum_probs=25.5
Q ss_pred EEECCEEeeeccccCCCCCEEEecCCcceecChhHHHHH
Q 017894 220 ISVGGEKLPIATTVFSTPGTIIDSGTVITRLPPHAYTVL 258 (364)
Q Consensus 220 i~v~~~~~~~~~~~~~~~~aiiDtgt~~~~lp~~~~~~l 258 (364)
+.++|..+. +++|||++-.+++.+.++.+
T Consensus 13 ~~I~g~~~~----------alvDtGat~~fis~~~a~rL 41 (72)
T PF13975_consen 13 VSIGGVQVK----------ALVDTGATHNFISESLAKRL 41 (72)
T ss_pred EEECCEEEE----------EEEeCCCcceecCHHHHHHh
Confidence 678887665 99999999999999999887
No 43
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=83.66 E-value=1.8 Score=32.21 Aligned_cols=27 Identities=33% Similarity=0.519 Sum_probs=23.5
Q ss_pred EEEEEeCCCCcEEEEEEEcCCcceeEeCC
Q 017894 23 IVTVGIGTPKRKFSLIFDTGSDLTWTQCK 51 (364)
Q Consensus 23 ~~~i~iGtP~q~~~~~~DTgS~~~wv~~~ 51 (364)
+++|.|. ++++++++||||+.+-++..
T Consensus 7 ~i~v~i~--g~~i~~LlDTGA~vsiI~~~ 33 (100)
T PF00077_consen 7 YITVKIN--GKKIKALLDTGADVSIISEK 33 (100)
T ss_dssp EEEEEET--TEEEEEEEETTBSSEEESSG
T ss_pred eEEEeEC--CEEEEEEEecCCCcceeccc
Confidence 5788888 88999999999999999654
No 44
>PF11925 DUF3443: Protein of unknown function (DUF3443); InterPro: IPR021847 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 400 to 434 amino acids in length. This protein has two conserved sequence motifs: NPV and DNNG.
Probab=83.28 E-value=40 Score=31.56 Aligned_cols=51 Identities=20% Similarity=0.296 Sum_probs=32.0
Q ss_pred EeCCCCceEEEEEEEEEEecCCCccCCeEEeeccCCC-----------C------CCCCcCeEEecCCCC
Q 017894 107 QYGDSSFSVGFFAKETLTLTSKDVFPKFLLGCGQNNR-----------G------LFRGAAGLLGLGRNK 159 (364)
Q Consensus 107 ~y~~g~~~~G~~~~D~v~i~~~~~~~~~~fg~a~~~~-----------~------~~~~~~GilGLg~~~ 159 (364)
.|.+|- .=|-+.+..|+|++. ...++++.+..+.. + ....+.||||+|.-+
T Consensus 83 ~F~sgy-tWGsVr~AdV~igge-~A~~iPiQvI~D~~~~~~P~sC~~~g~~~~t~~~lgaNGILGIg~~~ 150 (370)
T PF11925_consen 83 QFASGY-TWGSVRTADVTIGGE-TASSIPIQVIGDSAAPSVPSSCSNSGASMNTVADLGANGILGIGPFP 150 (370)
T ss_pred hccCcc-cccceEEEEEEEcCe-eccccCEEEEcCCCCCCCCchhhcCCCCCCCcccccCceEEeecCCc
Confidence 345543 557788899999984 55555555543320 0 112789999999753
No 45
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=81.85 E-value=1.8 Score=31.43 Aligned_cols=26 Identities=15% Similarity=0.238 Sum_probs=21.5
Q ss_pred EEEeCCCCcEEEEEEEcCCcceeEeCCC
Q 017894 25 TVGIGTPKRKFSLIFDTGSDLTWTQCKP 52 (364)
Q Consensus 25 ~i~iGtP~q~~~~~~DTgS~~~wv~~~~ 52 (364)
.+.|. ++++++++|||++.+-+....
T Consensus 2 ~v~In--G~~~~fLvDTGA~~tii~~~~ 27 (86)
T cd06095 2 TITVE--GVPIVFLVDTGATHSVLKSDL 27 (86)
T ss_pred EEEEC--CEEEEEEEECCCCeEEECHHH
Confidence 45666 899999999999999996543
No 46
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=81.79 E-value=2.2 Score=30.95 Aligned_cols=29 Identities=21% Similarity=0.271 Sum_probs=25.1
Q ss_pred EEECCEEeeeccccCCCCCEEEecCCcceecChhHHHHH
Q 017894 220 ISVGGEKLPIATTVFSTPGTIIDSGTVITRLPPHAYTVL 258 (364)
Q Consensus 220 i~v~~~~~~~~~~~~~~~~aiiDtgt~~~~lp~~~~~~l 258 (364)
+.+||+++. .++|||++.+.++.+..+.+
T Consensus 3 v~InG~~~~----------fLvDTGA~~tii~~~~a~~~ 31 (86)
T cd06095 3 ITVEGVPIV----------FLVDTGATHSVLKSDLGPKQ 31 (86)
T ss_pred EEECCEEEE----------EEEECCCCeEEECHHHhhhc
Confidence 678888765 99999999999999988875
No 47
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=74.41 E-value=8.4 Score=32.81 Aligned_cols=36 Identities=19% Similarity=0.319 Sum_probs=30.2
Q ss_pred CcceEEEeeEEEECCEEeeeccccCCCCCEEEecCCcceecChhHHHHH
Q 017894 210 SSFYGLDMTGISVGGEKLPIATTVFSTPGTIIDSGTVITRLPPHAYTVL 258 (364)
Q Consensus 210 ~~~w~v~l~~i~v~~~~~~~~~~~~~~~~aiiDtgt~~~~lp~~~~~~l 258 (364)
+++|.++ ..|||+.+. .++|||.+.+.|+.+..+.+
T Consensus 103 ~GHF~a~---~~VNGk~v~----------fLVDTGATsVal~~~dA~Rl 138 (215)
T COG3577 103 DGHFEAN---GRVNGKKVD----------FLVDTGATSVALNEEDARRL 138 (215)
T ss_pred CCcEEEE---EEECCEEEE----------EEEecCcceeecCHHHHHHh
Confidence 5667666 689999887 99999999999999887765
No 48
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=73.12 E-value=3.7 Score=30.46 Aligned_cols=27 Identities=15% Similarity=0.554 Sum_probs=21.8
Q ss_pred EEEECCEEeeeccccCCCCCEEEecCCcceecChhHH
Q 017894 219 GISVGGEKLPIATTVFSTPGTIIDSGTVITRLPPHAY 255 (364)
Q Consensus 219 ~i~v~~~~~~~~~~~~~~~~aiiDtgt~~~~lp~~~~ 255 (364)
.+.++|+.+. ++||||+....++.+.+
T Consensus 9 ~v~i~g~~i~----------~LlDTGA~vsiI~~~~~ 35 (100)
T PF00077_consen 9 TVKINGKKIK----------ALLDTGADVSIISEKDW 35 (100)
T ss_dssp EEEETTEEEE----------EEEETTBSSEEESSGGS
T ss_pred EEeECCEEEE----------EEEecCCCcceeccccc
Confidence 3677788665 99999999999998644
No 49
>cd06094 RP_Saci_like RP_Saci_like, retropepsin family. Retropepsin on retrotransposons with long terminal repeats (LTR) including Saci-1, -2 and -3 of Schistosoma mansoni. Retropepsins are related to fungal and mammalian pepsins. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified
Probab=70.28 E-value=14 Score=26.97 Aligned_cols=75 Identities=13% Similarity=0.142 Sum_probs=44.1
Q ss_pred CEEEecCCcceecChhHHHHHHHHHHHHHhcCCCCCCccccccceeccCCccccCCeEEEEEcCCcEEEeCCCceEEE-c
Q 017894 238 GTIIDSGTVITRLPPHAYTVLKTAFRQLMSKYPTAPAVSILDTCYDFSEHETITIPKISFFFNGGVEVDVDVTGIMFP-I 316 (364)
Q Consensus 238 ~aiiDtgt~~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~P~i~~~~~g~~~~~i~~~~~~~~-~ 316 (364)
..++|||+....+|....+.. . .-.++.+.-++|..+..-++..+.- .
T Consensus 11 ~fLVDTGA~vSviP~~~~~~~------~-------------------------~~~~~~l~AANgt~I~tyG~~~l~ldl 59 (89)
T cd06094 11 RFLVDTGAAVSVLPASSTKKS------L-------------------------KPSPLTLQAANGTPIATYGTRSLTLDL 59 (89)
T ss_pred EEEEeCCCceEeecccccccc------c-------------------------cCCceEEEeCCCCeEeeeeeEEEEEEc
Confidence 489999999999998765541 0 1112455555666666665544432 2
Q ss_pred CCCeEE-EEEEcCCCCCCeeEecccceeee
Q 017894 317 RASQVC-LAFAGNSDPSDVGIFGNVQQHTL 345 (364)
Q Consensus 317 ~~~~~C-~~~~~~~~~~~~~ilG~~fl~~~ 345 (364)
+.+... ..|.-. +-+..|||.-||+++
T Consensus 60 Glrr~~~w~FvvA--dv~~pIlGaDfL~~~ 87 (89)
T cd06094 60 GLRRPFAWNFVVA--DVPHPILGADFLQHY 87 (89)
T ss_pred CCCcEEeEEEEEc--CCCcceecHHHHHHc
Confidence 222122 233333 234579999999976
No 50
>cd05482 HIV_retropepsin_like Retropepsins, pepsin-like aspartate proteases. This is a subfamily of retropepsins. The family includes pepsin-like aspartate proteases from retroviruses, retrotransposons and retroelements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This gro
Probab=69.84 E-value=6.5 Score=28.72 Aligned_cols=25 Identities=28% Similarity=0.400 Sum_probs=21.3
Q ss_pred EEEeCCCCcEEEEEEEcCCcceeEeCC
Q 017894 25 TVGIGTPKRKFSLIFDTGSDLTWTQCK 51 (364)
Q Consensus 25 ~i~iGtP~q~~~~~~DTgS~~~wv~~~ 51 (364)
.+.|+ +|.+.+++|||+.++-+...
T Consensus 2 ~~~i~--g~~~~~llDTGAd~Tvi~~~ 26 (87)
T cd05482 2 TLYIN--GKLFEGLLDTGADVSIIAEN 26 (87)
T ss_pred EEEEC--CEEEEEEEccCCCCeEEccc
Confidence 45677 89999999999999999654
No 51
>cd05481 retropepsin_like_LTR_1 Retropepsins_like_LTR; pepsin-like aspartate protease from retrotransposons with long terminal repeats. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identifi
Probab=67.98 E-value=7.3 Score=28.77 Aligned_cols=21 Identities=24% Similarity=0.303 Sum_probs=19.1
Q ss_pred EEEecCCcceecChhHHHHHH
Q 017894 239 TIIDSGTVITRLPPHAYTVLK 259 (364)
Q Consensus 239 aiiDtgt~~~~lp~~~~~~l~ 259 (364)
+.+|||++...+|.+.++.+.
T Consensus 13 ~~vDtGA~vnllp~~~~~~l~ 33 (93)
T cd05481 13 FQLDTGATCNVLPLRWLKSLT 33 (93)
T ss_pred EEEecCCEEEeccHHHHhhhc
Confidence 889999999999999888874
No 52
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=66.80 E-value=7.9 Score=30.33 Aligned_cols=29 Identities=14% Similarity=0.229 Sum_probs=23.5
Q ss_pred EEECCEEeeeccccCCCCCEEEecCCcceecChhHHHHH
Q 017894 220 ISVGGEKLPIATTVFSTPGTIIDSGTVITRLPPHAYTVL 258 (364)
Q Consensus 220 i~v~~~~~~~~~~~~~~~~aiiDtgt~~~~lp~~~~~~l 258 (364)
+++||+++. |++|||+..+.++.+.++++
T Consensus 29 ~~ing~~vk----------A~VDtGAQ~tims~~~a~r~ 57 (124)
T PF09668_consen 29 CKINGVPVK----------AFVDTGAQSTIMSKSCAERC 57 (124)
T ss_dssp EEETTEEEE----------EEEETT-SS-EEEHHHHHHT
T ss_pred EEECCEEEE----------EEEeCCCCccccCHHHHHHc
Confidence 678888875 99999999999999998874
No 53
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family. Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.
Probab=63.12 E-value=34 Score=25.91 Aligned_cols=26 Identities=23% Similarity=0.309 Sum_probs=20.0
Q ss_pred EEEEeCCCC----cEEEEEEEcCCccee-Ee
Q 017894 24 VTVGIGTPK----RKFSLIFDTGSDLTW-TQ 49 (364)
Q Consensus 24 ~~i~iGtP~----q~~~~~~DTgS~~~w-v~ 49 (364)
+++.|..|. -++++++|||.+..- ++
T Consensus 2 ~~v~~~~p~~~~~~~v~~LVDTGat~~~~l~ 32 (107)
T TIGR03698 2 LDVELSNPKNPEFMEVRALVDTGFSGFLLVP 32 (107)
T ss_pred EEEEEeCCCCCCceEEEEEEECCCCeEEecC
Confidence 678888872 278999999999764 53
No 54
>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Ty3 is a gypsy-type, retrovirus-like, element found in the budding yeast. The Ty3 aspartyl protease is required for processing of the viral polyprotein into its mature species [].
Probab=60.53 E-value=13 Score=30.46 Aligned_cols=30 Identities=17% Similarity=0.354 Sum_probs=24.8
Q ss_pred EEEEEEeCCCCcEEEEEEEcCCcceeEeCC
Q 017894 22 YIVTVGIGTPKRKFSLIFDTGSDLTWTQCK 51 (364)
Q Consensus 22 y~~~i~iGtP~q~~~~~~DTgS~~~wv~~~ 51 (364)
=...+.++.-+.+++++|||||+..++...
T Consensus 33 ~T~~v~l~~~~t~i~vLfDSGSPTSfIr~d 62 (177)
T PF12384_consen 33 KTAIVQLNCKGTPIKVLFDSGSPTSFIRSD 62 (177)
T ss_pred cEEEEEEeecCcEEEEEEeCCCccceeehh
Confidence 356677777799999999999999998554
No 55
>PF02160 Peptidase_A3: Cauliflower mosaic virus peptidase (A3); InterPro: IPR000588 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of sequences contain an aspartic peptidase signature that belongs to MEROPS peptidase family A3, subfamily A3A (cauliflower mosaic virus-type endopeptidase, clan AA). Cauliflower mosaic virus belongs to the Retro-transcribing viruses, which have a double-stranded DNA genome. The genome includes an open reading frame (ORF V) that shows similarities to the pol gene of retroviruses. This ORF codes for a polyprotein that includes a reverse transcriptase, which, on the basis of a DTG triplet near the N terminus, was suggested to include an aspartic protease. The presence of an aspartic protease has been confirmed by mutational studies, implicating Asp-45 in catalysis. The protease releases itself from the polyprotein and is involved in reactions required to process the ORF IV polyprotein, which includes the viral coat protein []. The viral aspartic peptidase signature has also been found associated with a polyprotein encoded by integrated pararetrovirus-like sequences in the genome of Nicotiana tabacum (Common tobacco) []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis
Probab=59.19 E-value=55 Score=27.97 Aligned_cols=28 Identities=18% Similarity=0.122 Sum_probs=19.3
Q ss_pred CCeeEecccceeeeEEEEECCCCEEEEEe
Q 017894 332 SDVGIFGNVQQHTLEVVYDVAHGQVGFAA 360 (364)
Q Consensus 332 ~~~~ilG~~fl~~~y~vfD~~~~rigfa~ 360 (364)
+-..+||..|+|.+.=-...+ ++|-|..
T Consensus 90 g~d~IlG~NF~r~y~Pfiq~~-~~I~f~~ 117 (201)
T PF02160_consen 90 GIDIILGNNFLRLYEPFIQTE-DRIQFHK 117 (201)
T ss_pred CCCEEecchHHHhcCCcEEEc-cEEEEEe
Confidence 345899999999876555553 4666653
No 56
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=58.26 E-value=18 Score=28.35 Aligned_cols=38 Identities=21% Similarity=0.278 Sum_probs=25.3
Q ss_pred CCccEEEEEEeCCCCcEEEEEEEcCCcceeEeCCCcccCcC
Q 017894 18 GSGNYIVTVGIGTPKRKFSLIFDTGSDLTWTQCKPCVGFCY 58 (364)
Q Consensus 18 ~~~~y~~~i~iGtP~q~~~~~~DTgS~~~wv~~~~c~~~c~ 58 (364)
.....|++++|+ +++++.++|||+-.+-+. ..|.+.|.
T Consensus 21 ~v~mLyI~~~in--g~~vkA~VDtGAQ~tims-~~~a~r~g 58 (124)
T PF09668_consen 21 QVSMLYINCKIN--GVPVKAFVDTGAQSTIMS-KSCAERCG 58 (124)
T ss_dssp -----EEEEEET--TEEEEEEEETT-SS-EEE-HHHHHHTT
T ss_pred CcceEEEEEEEC--CEEEEEEEeCCCCccccC-HHHHHHcC
Confidence 345678999999 899999999999998884 44544454
No 57
>COG5550 Predicted aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=55.86 E-value=44 Score=26.02 Aligned_cols=20 Identities=35% Similarity=0.564 Sum_probs=18.4
Q ss_pred EEEecCCc-ceecChhHHHHH
Q 017894 239 TIIDSGTV-ITRLPPHAYTVL 258 (364)
Q Consensus 239 aiiDtgt~-~~~lp~~~~~~l 258 (364)
.++|||.+ ++.+|+++++++
T Consensus 29 ~LiDTGFtg~lvlp~~vaek~ 49 (125)
T COG5550 29 ELIDTGFTGYLVLPPQVAEKL 49 (125)
T ss_pred eEEecCCceeEEeCHHHHHhc
Confidence 68999999 999999999886
No 58
>cd05480 NRIP_C NRIP_C; putative nuclear receptor interacting protein. Proteins in this family have been described as probable nuclear receptor interacting proteins. The C-terminal domain of this family is homologous to the retroviral aspartyl protease domain. The domain is structurally related to one lobe of the pepsin molecule. The conserved active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=33.63 E-value=62 Score=24.28 Aligned_cols=28 Identities=18% Similarity=0.393 Sum_probs=22.4
Q ss_pred EECCEEeeeccccCCCCCEEEecCCcceecChhHHHHH
Q 017894 221 SVGGEKLPIATTVFSTPGTIIDSGTVITRLPPHAYTVL 258 (364)
Q Consensus 221 ~v~~~~~~~~~~~~~~~~aiiDtgt~~~~lp~~~~~~l 258 (364)
.+||.++. |.+|||+..+.++++-.++.
T Consensus 4 k~nG~~vk----------AfVDsGaQ~timS~~caerc 31 (103)
T cd05480 4 QCAGKELR----------ALVDTGCQYNLISAACLDRL 31 (103)
T ss_pred eECCEEEE----------EEEecCCchhhcCHHHHHHc
Confidence 45666654 99999999999998877664
No 59
>cd05486 Cathespin_E Cathepsin E, non-lysosomal aspartic protease. Cathepsin E is an intracellular, non-lysosomal aspartic protease expressed in a variety of cells and tissues. The protease has proposed physiological roles in antigen presentation by the MHC class II system, in the biogenesis of the vasoconstrictor peptide endothelin, and in neurodegeneration associated with brain ischemia and aging. Cathepsin E is the only A1 aspartic protease that exists as a homodimer with a disulfide bridge linking the two monomers. Like many other aspartic proteases, it is synthesized as a zymogen which is catalytically inactive towards its natural substrates at neutral pH and which auto-activates in an acidic environment. The overall structure follows the general fold of aspartic proteases of the A1 family, it is composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalyt
Probab=31.16 E-value=44 Score=30.61 Aligned_cols=34 Identities=21% Similarity=0.321 Sum_probs=23.5
Q ss_pred CCccEEEE---EEeCCC----CcEEEEEEEcCCcceeEeCC
Q 017894 18 GSGNYIVT---VGIGTP----KRKFSLIFDTGSDLTWTQCK 51 (364)
Q Consensus 18 ~~~~y~~~---i~iGtP----~q~~~~~~DTgS~~~wv~~~ 51 (364)
..++|.++ |.||.. .....++||||++.++++..
T Consensus 175 ~~~~w~v~l~~i~v~g~~~~~~~~~~aiiDTGTs~~~lP~~ 215 (316)
T cd05486 175 VQGYWQIQLDNIQVGGTVIFCSDGCQAIVDTGTSLITGPSG 215 (316)
T ss_pred CceEEEEEeeEEEEecceEecCCCCEEEECCCcchhhcCHH
Confidence 35677765 577732 12246999999999998754
No 60
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins. Phytepsin, a plant homolog of mammalian lysosomal pepsins, resides in grains, roots, stems, leaves and flowers. Phytepsin may participate in metabolic turnover and in protein processing events. In addition, it highly expressed in several plant tissues undergoing apoptosis. Phytepsin contains an internal region consisting of about 100 residues not present in animal or microbial pepsins. This region is thus called a plant specific insert. The insert is highly similar to saponins, which are lysosomal sphingolipid-activating proteins in mammalian cells. The saponin-like domain may have a role in the vacuolar targeting of phytepsin. Phytepsin, as its animal counterparts, possesses a topology typical of all aspartic proteases. They are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe has probably evolved fro
Probab=30.92 E-value=55 Score=30.07 Aligned_cols=33 Identities=24% Similarity=0.263 Sum_probs=23.2
Q ss_pred CccEEEE---EEeCCC-----CcEEEEEEEcCCcceeEeCC
Q 017894 19 SGNYIVT---VGIGTP-----KRKFSLIFDTGSDLTWTQCK 51 (364)
Q Consensus 19 ~~~y~~~---i~iGtP-----~q~~~~~~DTgS~~~wv~~~ 51 (364)
..+|.++ |.||.. .+...+++|||++.+++|..
T Consensus 187 ~~~w~v~l~~i~v~g~~~~~~~~~~~aivDTGTs~~~lP~~ 227 (317)
T cd06098 187 KGYWQFEMGDVLIGGKSTGFCAGGCAAIADSGTSLLAGPTT 227 (317)
T ss_pred CcEEEEEeCeEEECCEEeeecCCCcEEEEecCCcceeCCHH
Confidence 4567666 577742 23357899999999998753
No 61
>cd00303 retropepsin_like Retropepsins; pepsin-like aspartate proteases. The family includes pepsin-like aspartate proteases from retroviruses, retrotransposons and retroelements, as well as eukaryotic dna-damage-inducible proteins (DDIs), and bacterial aspartate peptidases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples
Probab=30.12 E-value=94 Score=20.76 Aligned_cols=19 Identities=16% Similarity=0.309 Sum_probs=16.7
Q ss_pred EEEecCCcceecChhHHHH
Q 017894 239 TIIDSGTVITRLPPHAYTV 257 (364)
Q Consensus 239 aiiDtgt~~~~lp~~~~~~ 257 (364)
+++|+|++...+..+.++.
T Consensus 12 ~liDtgs~~~~~~~~~~~~ 30 (92)
T cd00303 12 ALVDSGASVNFISESLAKK 30 (92)
T ss_pred EEEcCCCcccccCHHHHHH
Confidence 9999999999998887764
No 62
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation. Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. This degradation is a characteristic of programmed cell death. Nucellins are plant aspartic proteases specifically expressed in nucellar cells during degradation. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region, and two other regions nearly identical to two regions of plant aspartic proteases. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. Although the three-dimensional structures of the two lobes are very similar, the amino acid sequences are more d
Probab=29.43 E-value=81 Score=28.20 Aligned_cols=32 Identities=19% Similarity=0.381 Sum_probs=23.1
Q ss_pred ccEEEE---EEeCC---CCcEEEEEEEcCCcceeEeCC
Q 017894 20 GNYIVT---VGIGT---PKRKFSLIFDTGSDLTWTQCK 51 (364)
Q Consensus 20 ~~y~~~---i~iGt---P~q~~~~~~DTgS~~~wv~~~ 51 (364)
.+|.++ |.||. +.....++||||++.+.++..
T Consensus 157 ~~y~v~l~~i~vg~~~~~~~~~~~ivDTGTt~t~lp~~ 194 (273)
T cd05475 157 KHYSPGPASLLFNGQPTGGKGLEVVFDSGSSYTYFNAQ 194 (273)
T ss_pred CeEEEeEeEEEECCEECcCCCceEEEECCCceEEcCCc
Confidence 567666 57773 223457899999999999754
No 63
>PF08284 RVP_2: Retroviral aspartyl protease; InterPro: IPR013242 This region defines single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). These proteases are generally part of a larger polyprotein; usually pol, more rarely gag. Retroviral proteases appear to be homologous to a single domain of the two-domain eukaryotic aspartyl proteases.
Probab=27.82 E-value=88 Score=24.82 Aligned_cols=30 Identities=17% Similarity=0.173 Sum_probs=23.9
Q ss_pred ccEEEEEEeCCCCcEEEEEEEcCCcceeEeCC
Q 017894 20 GNYIVTVGIGTPKRKFSLIFDTGSDLTWTQCK 51 (364)
Q Consensus 20 ~~y~~~i~iGtP~q~~~~~~DTgS~~~wv~~~ 51 (364)
-.-.+.+.|. .++..++||+|++..+|...
T Consensus 20 ~vi~g~~~I~--~~~~~vLiDSGAThsFIs~~ 49 (135)
T PF08284_consen 20 DVITGTFLIN--SIPASVLIDSGATHSFISSS 49 (135)
T ss_pred CeEEEEEEec--cEEEEEEEecCCCcEEccHH
Confidence 3456777888 68999999999999998443
No 64
>KOG0012 consensus DNA damage inducible protein [Replication, recombination and repair]
Probab=26.90 E-value=4.4e+02 Score=24.80 Aligned_cols=39 Identities=8% Similarity=0.043 Sum_probs=29.6
Q ss_pred EEE-EEEcCCCCCCeeEecccceeeeEEEEECCCCEEEEEeC
Q 017894 321 VCL-AFAGNSDPSDVGIFGNVQQHTLEVVYDVAHGQVGFAAG 361 (364)
Q Consensus 321 ~C~-~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~rigfa~~ 361 (364)
.|- .++.. .+.-..||.-.||.+--.-|++++++-|+..
T Consensus 307 ~c~ftV~d~--~~~d~llGLd~Lrr~~ccIdL~~~~L~ig~~ 346 (380)
T KOG0012|consen 307 PCSFTVLDR--RDMDLLLGLDMLRRHQCCIDLKTNVLRIGNT 346 (380)
T ss_pred ccceEEecC--CCcchhhhHHHHHhccceeecccCeEEecCC
Confidence 474 55544 2334889999999999999999999887653
No 65
>PLN03146 aspartyl protease family protein; Provisional
Probab=26.62 E-value=89 Score=30.27 Aligned_cols=42 Identities=21% Similarity=0.377 Sum_probs=26.2
Q ss_pred ccccccCCccCCccEEEE---EEeCC-----CCcE------EEEEEEcCCcceeEeCC
Q 017894 8 TLPAIHGSVVGSGNYIVT---VGIGT-----PKRK------FSLIFDTGSDLTWTQCK 51 (364)
Q Consensus 8 ~~p~~~~~~~~~~~y~~~---i~iGt-----P~q~------~~~~~DTgS~~~wv~~~ 51 (364)
..|+.. +....+|++. |.||. |+-. -.++||||+++++++..
T Consensus 269 ~tPl~~--~~~~~~y~V~L~gIsVgg~~l~~~~~~~~~~~~g~~iiDSGTt~t~Lp~~ 324 (431)
T PLN03146 269 STPLVS--KDPDTFYYLTLEAISVGSKKLPYTGSSKNGVEEGNIIIDSGTTLTLLPSD 324 (431)
T ss_pred Eccccc--CCCCCeEEEeEEEEEECCEECcCCccccccCCCCcEEEeCCccceecCHH
Confidence 356642 1224577766 47874 1211 25899999999999654
No 66
>PTZ00147 plasmepsin-1; Provisional
Probab=20.94 E-value=78 Score=30.92 Aligned_cols=34 Identities=18% Similarity=0.279 Sum_probs=23.3
Q ss_pred CCccEEEEEE--eCCC-CcEEEEEEEcCCcceeEeCC
Q 017894 18 GSGNYIVTVG--IGTP-KRKFSLIFDTGSDLTWTQCK 51 (364)
Q Consensus 18 ~~~~y~~~i~--iGtP-~q~~~~~~DTgS~~~wv~~~ 51 (364)
...+|.+++. +|.- .....+++|||++.+++|..
T Consensus 313 ~~~~W~V~l~~~vg~~~~~~~~aIiDSGTsli~lP~~ 349 (453)
T PTZ00147 313 HDLYWQVDLDVHFGNVSSEKANVIVDSGTSVITVPTE 349 (453)
T ss_pred CCceEEEEEEEEECCEecCceeEEECCCCchhcCCHH
Confidence 3456766664 3431 23467999999999999755
No 67
>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH. Pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, renin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (renin, cathepsin D and E, pepsin) or commercially (chymosin) important. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residu
Probab=20.74 E-value=93 Score=27.52 Aligned_cols=34 Identities=21% Similarity=0.385 Sum_probs=25.4
Q ss_pred CccEEEE---EEeCC-----CCcEEEEEEEcCCcceeEeCCC
Q 017894 19 SGNYIVT---VGIGT-----PKRKFSLIFDTGSDLTWTQCKP 52 (364)
Q Consensus 19 ~~~y~~~---i~iGt-----P~q~~~~~~DTgS~~~wv~~~~ 52 (364)
..+|.+. |.||. ......++||||++.++++..-
T Consensus 179 ~~~~~v~l~~i~v~~~~~~~~~~~~~~iiDsGt~~~~lp~~~ 220 (283)
T cd05471 179 PGYWQVPLDGISVGGKSVISSSGGGGAIVDSGTSLIYLPSSV 220 (283)
T ss_pred CCEEEEEeCeEEECCceeeecCCCcEEEEecCCCCEeCCHHH
Confidence 5667666 46664 2466799999999999997664
No 68
>PTZ00013 plasmepsin 4 (PM4); Provisional
Probab=20.64 E-value=82 Score=30.74 Aligned_cols=34 Identities=15% Similarity=0.261 Sum_probs=23.2
Q ss_pred CCccEEEEEE--eCCC-CcEEEEEEEcCCcceeEeCC
Q 017894 18 GSGNYIVTVG--IGTP-KRKFSLIFDTGSDLTWTQCK 51 (364)
Q Consensus 18 ~~~~y~~~i~--iGtP-~q~~~~~~DTgS~~~wv~~~ 51 (364)
...+|.+++. +|.. .+...+++|||++.+++|..
T Consensus 312 ~~~yW~I~l~v~~G~~~~~~~~aIlDSGTSli~lP~~ 348 (450)
T PTZ00013 312 HDLYWQIDLDVHFGKQTMQKANVIVDSGTTTITAPSE 348 (450)
T ss_pred cCceEEEEEEEEECceeccccceEECCCCccccCCHH
Confidence 4456766665 3422 23456899999999998754
No 69
>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin. The members of this family are aspartic proteases of fungal origin, including aspergillopepsin, rhizopuspepsin, endothiapepsin, and rodosporapepsin. The various fungal species in this family may be the most economically important genus of fungi. They may serve as virulence factors or as industrial aids. For example, Aspergillopepsin from A. fumigatus is involved in invasive aspergillosis owing to its elastolytic activity and Aspergillopepsins from the mold A. saitoi are used in fermentation industry. Aspartic proteinases are a group of proteolytic enzymes in which the scissile peptide bond is attacked by a nucleophilic water molecule activated by two aspartic residues in a DT(S)G motif at the active site. They have a similar fold composed of two beta-barrel domains. Between the N-terminal and C-terminal domains, each of which contributes one catalytic aspartic residue, there is an extended active-
Probab=20.32 E-value=99 Score=27.63 Aligned_cols=17 Identities=12% Similarity=0.014 Sum_probs=15.1
Q ss_pred EEEecCCcceecChhHH
Q 017894 239 TIIDSGTVITRLPPHAY 255 (364)
Q Consensus 239 aiiDtgt~~~~lp~~~~ 255 (364)
++||||++.+++|.+-.
T Consensus 16 v~~DTGS~~~wv~~~~c 32 (278)
T cd06097 16 LDLDTGSSDLWVFSSET 32 (278)
T ss_pred EEEeCCCCceeEeeCCC
Confidence 99999999999997644
Done!