Query 017894
Match_columns 364
No_of_seqs 135 out of 1209
Neff 9.4
Searched_HMMs 29240
Date Mon Mar 25 06:38:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017894.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017894hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3vla_A EDGP; extracellular, in 100.0 6.4E-59 2.2E-63 442.5 27.5 343 3-362 5-399 (413)
2 3psg_A Pepsinogen; hydrolase(a 100.0 1.8E-58 6.2E-63 434.1 25.1 305 6-362 45-370 (370)
3 1tzs_A Cathepsin E; hydrolase, 100.0 1.4E-57 4.9E-62 426.0 29.7 309 5-364 11-344 (351)
4 2x0b_A Renin; hydrolase-hormon 100.0 1.9E-58 6.5E-63 434.8 21.1 304 7-362 51-383 (383)
5 3aup_A SBG7S, BG, basic 7S glo 100.0 1.7E-57 5.7E-62 433.1 27.2 338 5-364 8-395 (403)
6 1dpj_A Proteinase A; proteinas 100.0 5.2E-57 1.8E-61 418.9 26.4 304 6-362 2-329 (329)
7 3cms_A Chymosin B; hydrolase, 100.0 1.2E-57 4.1E-62 422.0 22.0 303 6-362 3-323 (323)
8 1am5_A Pepsin, acid proteinase 100.0 1.1E-56 3.8E-61 415.7 27.1 302 7-362 2-324 (324)
9 1mpp_A Pepsin; hydrolase(acid 100.0 8E-57 2.7E-61 422.8 25.6 311 7-364 8-357 (361)
10 4aa9_A Chymosin; hydrolase, as 100.0 5.2E-57 1.8E-61 417.4 22.8 301 8-362 2-320 (320)
11 1j71_A Candidapepsin, aspartic 100.0 1.7E-56 5.8E-61 416.1 24.5 298 6-364 2-326 (334)
12 3fv3_A SAPP1P-secreted asparti 100.0 2.6E-56 8.8E-61 416.1 25.4 302 6-364 2-331 (339)
13 2qzx_A Candidapepsin-5; aspart 100.0 3.2E-56 1.1E-60 415.7 24.8 301 6-364 2-333 (342)
14 3k1w_A Renin; protease, altern 100.0 2.1E-56 7.3E-61 417.0 22.8 307 4-362 5-340 (341)
15 1htr_B Gastricsin; aspartyl pr 100.0 6.5E-56 2.2E-60 411.5 25.6 304 7-362 3-329 (329)
16 1miq_A Plasmepsin; aspartic pr 100.0 7.4E-56 2.5E-60 417.1 25.5 301 6-362 51-374 (375)
17 3c9x_A Trichoderma reesei aspa 100.0 7.6E-56 2.6E-60 410.8 23.0 306 8-361 4-329 (329)
18 2apr_A Rhizopuspepsin; hydrola 100.0 2.8E-55 9.6E-60 406.3 26.7 303 7-362 4-324 (325)
19 1oew_A Endothiapepsin; hydrola 100.0 1.4E-55 4.8E-60 409.0 23.3 304 8-361 4-329 (329)
20 3pvk_A Candidapepsin-2; hydrol 100.0 2.3E-55 7.9E-60 410.2 24.1 302 6-364 2-333 (342)
21 1qdm_A Prophytepsin; aspartic 100.0 4.9E-55 1.7E-59 422.3 27.0 318 6-362 41-478 (478)
22 3qvc_A Histo-aspartic protease 100.0 2.5E-55 8.6E-60 420.6 23.8 302 5-362 125-449 (451)
23 2bju_A Plasmepsin II; aspartic 100.0 1E-54 3.5E-59 415.9 23.6 301 7-362 128-450 (453)
24 1yg9_A Aspartic protease BLA G 100.0 1E-54 3.4E-59 403.3 21.5 304 6-362 6-329 (330)
25 1t6e_X Xylanase inhibitor; two 100.0 2.7E-53 9.4E-58 401.2 28.7 328 6-362 2-373 (381)
26 2ewy_A Beta-secretase 2; BACE2 100.0 3.2E-53 1.1E-57 401.5 26.8 311 16-364 9-357 (383)
27 3vf3_A Beta-secretase 1; struc 100.0 3.9E-53 1.3E-57 403.3 27.5 311 18-364 26-376 (402)
28 1wkr_A Polyporopepsin; hydrola 100.0 4.1E-53 1.4E-57 394.4 26.3 297 7-364 3-335 (340)
29 1ibq_A Aspergillopepsin; aspar 100.0 1.3E-53 4.5E-58 395.1 22.7 303 7-362 3-325 (325)
30 1izd_A Aspartic proteinase; su 100.0 1.7E-53 5.8E-58 393.9 22.1 302 7-362 4-323 (323)
31 2qp8_A Beta-secretase 1; BACE1 100.0 6.6E-53 2.3E-57 400.7 25.6 311 16-364 17-369 (395)
32 3lpj_A Beta-secretase 1; alzhe 100.0 9.4E-53 3.2E-57 406.3 26.5 311 18-364 72-422 (455)
33 1bxo_A Protein (penicillopepsi 100.0 2.3E-53 7.7E-58 393.2 20.8 301 7-362 4-323 (323)
34 1b5f_A Protein (cardosin A); h 100.0 4.2E-42 1.4E-46 303.9 16.1 221 6-264 2-238 (239)
35 1lya_B Cathepsin D; lysosomal 100.0 5.8E-37 2E-41 271.7 17.2 215 129-362 3-241 (241)
36 1lya_A Cathepsin D; lysosomal 99.9 3.6E-23 1.2E-27 155.2 8.6 92 6-127 2-96 (97)
37 1b5f_B Protein (cardosin A); h 99.7 7.4E-18 2.5E-22 124.1 7.1 80 282-362 3-87 (87)
38 2i1a_A DNA damage-inducible pr 93.8 0.12 4.3E-06 40.7 6.2 109 211-359 25-134 (148)
39 3s8i_A Protein DDI1 homolog 1; 93.0 0.2 6.8E-06 39.6 6.2 108 212-360 24-134 (148)
40 2i1a_A DNA damage-inducible pr 88.2 0.45 1.5E-05 37.4 4.1 37 9-50 17-53 (148)
41 1fmb_A EIAV protease; hydrolas 84.3 1 3.6E-05 33.0 4.0 26 22-49 9-34 (104)
42 2hs1_A HIV-1 protease; ultra-h 83.8 1.1 3.8E-05 32.5 3.9 27 23-51 10-36 (99)
43 3s8i_A Protein DDI1 homolog 1; 82.6 1.2 4.1E-05 35.0 4.0 32 18-51 21-52 (148)
44 3ec0_A Protease; HIV-2, inhibi 81.4 2.2 7.6E-05 30.9 4.7 28 23-52 10-37 (99)
45 3liy_A Protease; hydrolase, hy 77.4 2.5 8.5E-05 31.3 3.9 31 23-53 12-45 (116)
46 2hah_A Protease, retropepsin; 75.3 2.8 9.4E-05 31.4 3.7 26 22-50 15-40 (116)
47 3sqf_A Protease; folded monome 72.2 3.8 0.00013 30.4 3.8 30 22-53 10-39 (114)
48 3slz_A GAG-Pro-POL polyprotein 69.2 4.6 0.00016 30.9 3.8 29 21-51 22-50 (132)
49 3ka2_A [L-Ala51;Gly51']HIV-1 p 61.1 7.5 0.00025 32.1 3.8 27 22-50 9-35 (203)
50 2rsp_A RSV protease; hydrolase 54.8 9.7 0.00033 28.7 3.2 23 28-52 27-49 (124)
51 1lya_A Cathepsin D; lysosomal 44.5 22 0.00075 25.3 3.7 17 239-255 30-46 (97)
52 1bxo_A Protein (penicillopepsi 42.5 25 0.00087 31.0 4.6 43 197-256 5-47 (323)
53 2hs1_A HIV-1 protease; ultra-h 42.2 17 0.00057 26.2 2.7 30 213-252 6-35 (99)
54 1fmb_A EIAV protease; hydrolas 41.0 17 0.00059 26.4 2.6 34 213-256 6-39 (104)
55 1izd_A Aspartic proteinase; su 40.3 29 0.00099 30.7 4.6 43 197-256 5-47 (323)
56 3ec0_A Protease; HIV-2, inhibi 39.1 20 0.00067 25.8 2.6 29 212-250 5-33 (99)
57 2hah_A Protease, retropepsin; 38.4 23 0.00078 26.3 3.0 30 212-252 11-40 (116)
58 1ibq_A Aspergillopepsin; aspar 38.4 29 0.00098 30.7 4.3 42 198-256 5-46 (325)
59 1lya_B Cathepsin D; lysosomal 38.4 26 0.00089 29.3 3.8 34 18-51 97-137 (241)
60 1b5f_A Protein (cardosin A); h 36.1 24 0.00082 29.7 3.2 33 19-51 187-227 (239)
61 3ka2_A [L-Ala51;Gly51']HIV-1 p 35.7 33 0.0011 28.2 3.8 28 22-51 113-140 (203)
62 3slz_A GAG-Pro-POL polyprotein 35.1 37 0.0013 25.8 3.7 26 218-253 25-50 (132)
63 1mpp_A Pepsin; hydrolase(acid 30.9 61 0.0021 28.9 5.2 44 196-254 5-50 (361)
64 2apr_A Rhizopuspepsin; hydrola 30.2 59 0.002 28.6 4.9 32 210-254 14-47 (325)
65 1oew_A Endothiapepsin; hydrola 29.0 60 0.0021 28.6 4.8 33 210-255 14-48 (329)
66 3c9x_A Trichoderma reesei aspa 28.1 64 0.0022 28.4 4.8 34 210-256 14-49 (329)
67 3cms_A Chymosin B; hydrolase, 27.6 72 0.0025 28.0 5.0 45 198-255 3-47 (323)
68 2x0b_A Renin; hydrolase-hormon 24.4 58 0.002 29.6 3.8 34 18-51 240-280 (383)
69 3aup_A SBG7S, BG, basic 7S glo 23.0 1E+02 0.0034 28.1 5.2 42 200-253 11-52 (403)
70 1qdm_A Prophytepsin; aspartic 22.3 54 0.0018 30.9 3.2 33 19-51 230-270 (478)
71 4aa9_A Chymosin; hydrolase, as 22.2 72 0.0025 27.8 3.9 35 18-52 184-225 (320)
72 1htr_B Gastricsin; aspartyl pr 21.8 74 0.0025 27.9 3.9 34 19-52 188-229 (329)
73 1dpj_A Proteinase A; proteinas 21.6 71 0.0024 28.1 3.8 33 19-51 191-229 (329)
74 3k1w_A Renin; protease, altern 21.4 61 0.0021 28.6 3.3 35 18-52 197-238 (341)
75 1miq_A Plasmepsin; aspartic pr 21.1 62 0.0021 29.2 3.3 34 19-52 238-274 (375)
76 1tzs_A Cathepsin E; hydrolase, 21.1 54 0.0018 29.2 2.9 33 19-51 200-239 (351)
77 1wkr_A Polyporopepsin; hydrola 20.4 1.1E+02 0.0037 26.9 4.8 15 239-253 29-43 (340)
No 1
>3vla_A EDGP; extracellular, inhibitor, plant protein; HET: NAG; 0.95A {Daucus carota} PDB: 3vlb_A
Probab=100.00 E-value=6.4e-59 Score=442.55 Aligned_cols=343 Identities=25% Similarity=0.423 Sum_probs=282.1
Q ss_pred CCCCcccccccCCccCCccEEEEEEeCCCCcEEEEEEEcCCcceeEeCCCcccCcCCCCCCCCCCCCCCcccccCCCCCc
Q 017894 3 EKGAATLPAIHGSVVGSGNYIVTVGIGTPKRKFSLIFDTGSDLTWTQCKPCVGFCYQQKEKIFDPKRSKSYRNVSCSSTV 82 (364)
Q Consensus 3 ~~~~~~~p~~~~~~~~~~~y~~~i~iGtP~q~~~~~~DTgS~~~wv~~~~c~~~c~~~~~~~y~~s~Sst~~~~~~~~~~ 82 (364)
+..++.+||+. +..+++|+++|.||||||++.|++||||+++||+|..| .+|+||+.++|.++.
T Consensus 5 ~~~~~~~pv~~--d~~~~~Y~~~i~iGTPpq~~~v~~DTGS~~lWv~c~~c--------------~~Sst~~~v~C~s~~ 68 (413)
T 3vla_A 5 RPSALVVPVKK--DASTLQYVTTINQRTPLVSENLVVDLGGRFLWVDCDQN--------------YVSSTYRPVRCRTSQ 68 (413)
T ss_dssp CCSEEEEEEEE--CTTTCCEEEEEEETTTTEEEEEEEETTCSSEEEECSSS--------------CCCTTCEECBTTSHH
T ss_pred CCccEEEEeee--cCCCCeEEEEEEcCCCCcceEEEEeCCChhhhcccCCC--------------CCCCCcCccCCCccc
Confidence 34578899995 66899999999999999999999999999999999865 379999999999999
Q ss_pred cCCcccCCCC------CCCCCCCCcceeeEEeC-CCCceEEEEEEEEEEecC--------CCccCCeEEeeccCC--CCC
Q 017894 83 CSSLESATGN------IPGCASNKTCVYGIQYG-DSSFSVGFFAKETLTLTS--------KDVFPKFLLGCGQNN--RGL 145 (364)
Q Consensus 83 c~~~~~~~~~------~~~c~~~~~~~~~~~y~-~g~~~~G~~~~D~v~i~~--------~~~~~~~~fg~a~~~--~~~ 145 (364)
|...+.+.-. .+.|.. +.|.|.+.|+ +++...|++++|+|+|+. ...++++.|||+... .+.
T Consensus 69 C~~~~~~~~~~c~s~~~~~c~~-~~c~~~i~Y~~d~~~~~G~l~~Dtv~l~~~~g~~~~~~~~v~~~~FGc~~~~~~~g~ 147 (413)
T 3vla_A 69 CSLSGSIACGDCFNGPRPGCNN-NTCGVFPENPVINTATGGEVAEDVVSVESTDGSSSGRVVTVPRFIFSCAPTSLLQNL 147 (413)
T ss_dssp HHHTTCCEEECCSSCCBTTBCS-SEEEECCEETTTTEECCEEEEEEEEEEEEECSSBEEEEEEEEEEEEEEECGGGGTTS
T ss_pred ccccccCCCcccccCCCCCCCC-CcCcceeecCcCCceeeeEEEEEEEEecccCCCCcccceeeCCEEEECcccccccCc
Confidence 9877654211 123443 4799999994 777789999999999972 136788999999986 445
Q ss_pred CCCcCeEEecCCCCChhHHHhhhhc--CCcEEEeCCCCCCCceeEEeCCCCC---------CC-ceEeecccCCCC----
Q 017894 146 FRGAAGLLGLGRNKISLVYQTASKY--KKRFSYCLPSSSSSTGHLTFGPGIK---------KS-VKFTPLSSAFQG---- 209 (364)
Q Consensus 146 ~~~~~GilGLg~~~~s~~~q~~~~~--~~~fsl~l~~~~~~~g~l~fGg~d~---------~~-l~~~p~~~~~~~---- 209 (364)
+..++||||||+.+++++.|+..+. +++||+||.+.....|.|+||+.|. ++ +.|+|+..++..
T Consensus 148 ~~~~dGIlGLg~~~lSl~sql~~~~~i~~~FS~cL~~~~~~~G~l~fGg~~~~~~p~~~~~g~~l~~tPl~~~~~~~~~~ 227 (413)
T 3vla_A 148 ASGVVGMAGLGRTRIALPSQFASAFSFKRKFAMCLSGSTSSNSVIIFGNDPYTFLPNIIVSDKTLTYTPLLTNPVSTSAT 227 (413)
T ss_dssp CTTCCEEEECSSSSSSHHHHHHHHHTCCSEEEEECCSCSSSCEEEEEESCCEEETTTEEECTTTSEEEECBCCSSCCSSS
T ss_pred ccccccccccCCCCcchHHHHhhhcCCCceEEEeCCCCCCCceEEEECCCcccccccccccCCceeEeecccCCcccccc
Confidence 6689999999999999999998763 5999999998655689999999873 46 999999986422
Q ss_pred ------CcceEEEeeEEEECCEEeeeccccCC-----CCCEEEecCCcceecChhHHHHHHHHHHHHHh--cCCCCCCcc
Q 017894 210 ------SSFYGLDMTGISVGGEKLPIATTVFS-----TPGTIIDSGTVITRLPPHAYTVLKTAFRQLMS--KYPTAPAVS 276 (364)
Q Consensus 210 ------~~~w~v~l~~i~v~~~~~~~~~~~~~-----~~~aiiDtgt~~~~lp~~~~~~l~~~l~~~~~--~~~~~~~~~ 276 (364)
..+|.|.|++|+|+++.+.++...+. .+.+||||||++++||.+++++|.+++.+.+. .+++.....
T Consensus 228 ~~~~~~~~~y~V~l~~IsVgg~~l~~~~~~~~~~~~g~~~aIiDSGTslt~lp~~~y~~l~~a~~~~~~~~~~~~~~~~~ 307 (413)
T 3vla_A 228 STQGEPSVEYFIGVKSIKINSKIVALNTSLLSISSAGLGGTKISTINPYTVLETSIYKAVTEAFIKESAARNITRVASVA 307 (413)
T ss_dssp CCTTCCCCSCEECCCEEEETTEEECCCGGGTSBCTTSCBCEEECSSSSSEEEEHHHHHHHHHHHHHHHHHTTCCEECCCT
T ss_pred ccccCCCceEEEEEEEEEECCEEccCCchhcccccCCCCCEEEECCCCcEEcCHHHHHHHHHHHHHHhcccCCCcCCCCC
Confidence 26999999999999999987755442 24799999999999999999999999999865 343333344
Q ss_pred ccccceeccCCcc----ccCCeEEEEEcC-CcEEEeCCCceEEEcCCCeEEEEEEcCCCC-CCeeEecccceeeeEEEEE
Q 017894 277 ILDTCYDFSEHET----ITIPKISFFFNG-GVEVDVDVTGIMFPIRASQVCLAFAGNSDP-SDVGIFGNVQQHTLEVVYD 350 (364)
Q Consensus 277 ~~~~c~~~~~~~~----~~~P~i~~~~~g-~~~~~i~~~~~~~~~~~~~~C~~~~~~~~~-~~~~ilG~~fl~~~y~vfD 350 (364)
.+..|+.+++... ..+|+|+|+|.| +++|+|++++|+++...+..|++|+..+.. ...||||..|||++|+|||
T Consensus 308 ~~~~C~~~~~~~~~~~~~~lP~i~f~f~g~~~~~~l~~~~y~~~~~~~~~Cl~~~~~~~~~~~~~IlGd~fl~~~~vvfD 387 (413)
T 3vla_A 308 PFGACFSTDNILSTRLGPSVPSIDLVLQSESVVWTITGSNSMVYINDNVVCLGVVDGGSNLRTSIVIGGHQLEDNLVQFD 387 (413)
T ss_dssp TCSCEEECTTCCEETTEECCCCEEEECSSTTCEEEECHHHHEEEEETTEEEECEEEEESSCSSSEEECHHHHTTEEEEEE
T ss_pred CCcceeccCCccccccccCCCcEEEEEcCCcEEEEeCccceEEEeCCCcEEEEEEecCCCcccceeEehhhhcCeEEEEE
Confidence 5678999876532 579999999954 489999999999986657899988776432 3579999999999999999
Q ss_pred CCCCEEEEEeCC
Q 017894 351 VAHGQVGFAAGG 362 (364)
Q Consensus 351 ~~~~rigfa~~~ 362 (364)
++++|||||++.
T Consensus 388 ~~~~riGfa~~~ 399 (413)
T 3vla_A 388 LATSRVGFSGTL 399 (413)
T ss_dssp TTTTEEEEEEEG
T ss_pred CCCCEEEEEEec
Confidence 999999999853
No 2
>3psg_A Pepsinogen; hydrolase(acid proteinase zymogen); 1.65A {Sus scrofa} SCOP: b.50.1.2 PDB: 2psg_A 4pep_A* 3pep_A* 1f34_A* 1psa_A* 1yx9_A 5pep_A 1flh_A 1qrp_E* 1psn_A* 1pso_E* 3utl_A
Probab=100.00 E-value=1.8e-58 Score=434.14 Aligned_cols=305 Identities=23% Similarity=0.389 Sum_probs=256.3
Q ss_pred CcccccccCCccCCccEEEEEEeCCCCcEEEEEEEcCCcceeEeCCCcc-cCcCCCCCCCCCCCCCCcccccCCCCCccC
Q 017894 6 AATLPAIHGSVVGSGNYIVTVGIGTPKRKFSLIFDTGSDLTWTQCKPCV-GFCYQQKEKIFDPKRSKSYRNVSCSSTVCS 84 (364)
Q Consensus 6 ~~~~p~~~~~~~~~~~y~~~i~iGtP~q~~~~~~DTgS~~~wv~~~~c~-~~c~~~~~~~y~~s~Sst~~~~~~~~~~c~ 84 (364)
....||+ ++.+.+|+++|.||||||+++|++||||+++||++..|. ..|..+ ..|+|++|+||+..
T Consensus 45 ~~~~~l~---n~~d~~Y~~~i~iGTPpQ~~~v~~DTGSs~lWV~s~~C~~~~C~~~--~~y~~~~SsT~~~~-------- 111 (370)
T 3psg_A 45 IGDEPLE---NYLDTEYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSSLACSDH--NQFNPDDSSTFEAT-------- 111 (370)
T ss_dssp SCCCTTG---GGTTCCEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSGGGTTS--CCBCGGGCTTCEEE--------
T ss_pred cceecce---eccCCEEEEEEEEcCCCCEEEEEEeCCCCccEEECCCCCCcccCCC--CCCCCccCcCcEEC--------
Confidence 3556776 788999999999999999999999999999999999993 457655 89999999999996
Q ss_pred CcccCCCCCCCCCCCCcceeeEEeCCCCceEEEEEEEEEEecCCCccCCeEEeeccCCCC-CC--CCcCeEEecCCCCCh
Q 017894 85 SLESATGNIPGCASNKTCVYGIQYGDSSFSVGFFAKETLTLTSKDVFPKFLLGCGQNNRG-LF--RGAAGLLGLGRNKIS 161 (364)
Q Consensus 85 ~~~~~~~~~~~c~~~~~~~~~~~y~~g~~~~G~~~~D~v~i~~~~~~~~~~fg~a~~~~~-~~--~~~~GilGLg~~~~s 161 (364)
.+.|.+.|++|+ +.|.+++|+|+|++ +.++++.||++....+ .+ ..++||||||++.++
T Consensus 112 ----------------~~~~~i~Yg~Gs-~~G~~~~Dtv~ig~-~~v~~~~Fg~a~~~~~~~~~~~~~dGIlGLg~~~~s 173 (370)
T 3psg_A 112 ----------------SQELSITYGTGS-MTGILGYDTVQVGG-ISDTNQIFGLSETEPGSFLYYAPFDGILGLAYPSIS 173 (370)
T ss_dssp ----------------EEEEEEESSSCE-EEEEEEEEEEEETT-EEEEEEEEEEECSCCCGGGGGCSCSEEEECSCGGGC
T ss_pred ----------------CcEEEEEeCCce-EEEEEEEEEEeeCC-cccCCeEEEEEEeecccccccCCccceeccCCcccc
Confidence 579999999998 89999999999999 7999999999998865 22 378999999998754
Q ss_pred ------hHHHhhhhc---CCcEEEeCCCCCCCceeEEeCCCCC----CCceEeecccCCCCCcceEEEeeEEEECCEEee
Q 017894 162 ------LVYQTASKY---KKRFSYCLPSSSSSTGHLTFGPGIK----KSVKFTPLSSAFQGSSFYGLDMTGISVGGEKLP 228 (364)
Q Consensus 162 ------~~~q~~~~~---~~~fsl~l~~~~~~~g~l~fGg~d~----~~l~~~p~~~~~~~~~~w~v~l~~i~v~~~~~~ 228 (364)
+.+++..+. +++||+||.+....+|.|+|||+|+ +++.|+|+.. ..+|+|.+++|+|+++.+.
T Consensus 174 ~~~~~~~~~~l~~qg~i~~~~FS~~L~~~~~~~G~l~fGg~D~~~y~g~l~~~pv~~----~~~w~v~l~~i~v~g~~~~ 249 (370)
T 3psg_A 174 ASGATPVFDNLWDQGLVSQDLFSVYLSSNDDSGSVVLLGGIDSSYYTGSLNWVPVSV----EGYWQITLDSITMDGETIA 249 (370)
T ss_dssp GGGCCCHHHHHHHTTCSSSSEEEEEEC-----CEEEEETCCCGGGBSSCCEEEECSE----ETTEEEEECEEESSSSEEE
T ss_pred ccCCCCHHHHHHHCCCCCCCEEEEEEccCCCCCeEEEEEeeChHhcCCcceeecccc----cceeEEEEeEEEECCEEEe
Confidence 455555542 7999999998755689999999994 7999999988 6899999999999998876
Q ss_pred eccccCCCCCEEEecCCcceecChhHHHHHHHHHHHHHhcCCCCCCccccccceeccCCccccCCeEEEEEcCCcEEEeC
Q 017894 229 IATTVFSTPGTIIDSGTVITRLPPHAYTVLKTAFRQLMSKYPTAPAVSILDTCYDFSEHETITIPKISFFFNGGVEVDVD 308 (364)
Q Consensus 229 ~~~~~~~~~~aiiDtgt~~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~P~i~~~~~g~~~~~i~ 308 (364)
.... ..|+|||||+++++|.+++++|.+++++. . ... .+|.++|.....+|+|+|+| +|.+++|+
T Consensus 250 ~~~~----~~aiiDTGTs~~~lP~~~~~~i~~~i~a~---~-~~~------g~~~v~C~~~~~lP~i~f~~-~g~~~~l~ 314 (370)
T 3psg_A 250 CSGG----CQAIVDTGTSLLTGPTSAIANIQSDIGAS---E-NSD------GEMVISCSSIDSLPDIVFTI-DGVQYPLS 314 (370)
T ss_dssp CTTC----EEEEECTTCCSEEEEHHHHHHHHHHTTCE---E-CTT------CCEECCGGGGGGCCCEEEEE-TTEEEEEC
T ss_pred cCCC----ceEEEcCCCCcEECCHHHHHHHHHHhCCc---c-cCC------CcEEEECCCcccCCcEEEEE-CCEEEEEC
Confidence 4322 35999999999999999999999998765 1 111 14888898888999999999 89999999
Q ss_pred CCceEEEcCCCeEEE-EEEcCCC---CCCeeEecccceeeeEEEEECCCCEEEEEeCC
Q 017894 309 VTGIMFPIRASQVCL-AFAGNSD---PSDVGIFGNVQQHTLEVVYDVAHGQVGFAAGG 362 (364)
Q Consensus 309 ~~~~~~~~~~~~~C~-~~~~~~~---~~~~~ilG~~fl~~~y~vfD~~~~rigfa~~~ 362 (364)
+++|+++ .+..|+ +|...+. .+..||||.+|||++|+|||++++|||||+|+
T Consensus 315 ~~~yi~~--~~~~C~~~~~~~~~~~~~~~~~ILG~~Fl~~~y~vfD~~~~riGfA~a~ 370 (370)
T 3psg_A 315 PSAYILQ--DDDSCTSGFEGMDVPTSSGELWILGDVFIRQYYTVFDRANNKVGLAPVA 370 (370)
T ss_dssp HHHHEEE--CSSCEEESEEEECCCTTSCCEEEECHHHHTTEEEEEETTTTEEEEEEBC
T ss_pred HHHhccc--CCCEEEEEEEeCCCCCCCCCcEEeChHHhcceEEEEECCCCEEEEEEcC
Confidence 9999998 345798 5665421 23469999999999999999999999999985
No 3
>1tzs_A Cathepsin E; hydrolase, aspartic protease, activation intermediate; 2.35A {Homo sapiens}
Probab=100.00 E-value=1.4e-57 Score=426.04 Aligned_cols=309 Identities=24% Similarity=0.388 Sum_probs=256.4
Q ss_pred CCcccccccCCccCCccEEEEEEeCCCCcEEEEEEEcCCcceeEeCCCcc-cCcCCCCCCCCCCCCCCcccccCCCCCcc
Q 017894 5 GAATLPAIHGSVVGSGNYIVTVGIGTPKRKFSLIFDTGSDLTWTQCKPCV-GFCYQQKEKIFDPKRSKSYRNVSCSSTVC 83 (364)
Q Consensus 5 ~~~~~p~~~~~~~~~~~y~~~i~iGtP~q~~~~~~DTgS~~~wv~~~~c~-~~c~~~~~~~y~~s~Sst~~~~~~~~~~c 83 (364)
+...+||+ ++.+.+|+++|.||||+|++.|++||||+++||+|..|. ..|..+ +.|+|++|+||+..
T Consensus 11 ~~~~~~l~---n~~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~~C~~~~C~~~--~~y~~~~SsT~~~~------- 78 (351)
T 1tzs_A 11 QSAKEPLI---NYLDMEYFGTISIGSPPQNFTVIFDTGSSNLWVPSVYCTSPACKTH--SRFQPSQSSTYSQP------- 78 (351)
T ss_dssp ---CCTTG---GGSSSCCCEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSGGGTTS--CCBCGGGCTTCBCC-------
T ss_pred Cccceece---ecCCCEEEEEEEECCCCeEEEEEEeCCCcceEEecCCCCccccCCC--CcCCcccCcceEEC-------
Confidence 44567887 677899999999999999999999999999999999995 468765 89999999999986
Q ss_pred CCcccCCCCCCCCCCCCcceeeEEeCCCCceEEEEEEEEEEecCCCccCCeEEeeccCCCCC-C--CCcCeEEecCCCCC
Q 017894 84 SSLESATGNIPGCASNKTCVYGIQYGDSSFSVGFFAKETLTLTSKDVFPKFLLGCGQNNRGL-F--RGAAGLLGLGRNKI 160 (364)
Q Consensus 84 ~~~~~~~~~~~~c~~~~~~~~~~~y~~g~~~~G~~~~D~v~i~~~~~~~~~~fg~a~~~~~~-~--~~~~GilGLg~~~~ 160 (364)
.|.|.+.|++|+ +.|.+++|+|+|++ ..++++.||++....+. + ..++||||||++.+
T Consensus 79 -----------------~~~~~i~Yg~Gs-~~G~~~~D~v~ig~-~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~ 139 (351)
T 1tzs_A 79 -----------------GQSFSIQYGTGS-LSGIIGADQVSVEG-LTVVGQQFGESVTEPGQTFVDAEFDGILGLGYPSL 139 (351)
T ss_dssp -----------------SCEEEEESSSCE-EEEEEEEEEEEETT-EEEEEEEEEEECSCCCGGGGGCSCSEEEECSCGGG
T ss_pred -----------------CCEEEEEeCCCC-eEEEEEEeEEEECC-eEECCeEEEEEEeccccccccCCCceEEecCCccc
Confidence 579999999997 89999999999999 69999999999987552 2 37899999999875
Q ss_pred h------hHHHhhhhc---CCcEEEeCCCCCCC--ceeEEeCCCCC----CCceEeecccCCCCCcceEEEeeEEEECCE
Q 017894 161 S------LVYQTASKY---KKRFSYCLPSSSSS--TGHLTFGPGIK----KSVKFTPLSSAFQGSSFYGLDMTGISVGGE 225 (364)
Q Consensus 161 s------~~~q~~~~~---~~~fsl~l~~~~~~--~g~l~fGg~d~----~~l~~~p~~~~~~~~~~w~v~l~~i~v~~~ 225 (364)
+ ++.++..+. +++||+||.+.... .|.|+|||+|+ +++.|+|+.. ..+|.|.+++|+|+++
T Consensus 140 s~~~~~~~~~~l~~qg~i~~~~FS~~L~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~----~~~~~v~l~~i~v~~~ 215 (351)
T 1tzs_A 140 AVGGVTPVFDNMMAQNLVDLPMFSVYMSSNPEGGAGSELIFGGYDHSHFSGSLNWVPVTK----QAYWQIALDNIQVGGT 215 (351)
T ss_dssp SGGGCCCHHHHHHHTTCCSSSEEEEECCCCC--CTTCEEEETSCCGGGBCSCCEEEECSE----ETTEEEEEEEEEETTE
T ss_pred cccCCCcHHHHHHHCCCCCCCEEEEEEcCCCCCCCCCEEEECCCCHHHcCCceEEEecCC----CceEEEEeCEEEECCc
Confidence 4 455665542 69999999986443 89999999984 7999999987 6799999999999998
Q ss_pred EeeeccccCCCCCEEEecCCcceecChhHHHHHHHHHHHHHhcCCCCCCccccccceeccCCccccCCeEEEEEcCCcEE
Q 017894 226 KLPIATTVFSTPGTIIDSGTVITRLPPHAYTVLKTAFRQLMSKYPTAPAVSILDTCYDFSEHETITIPKISFFFNGGVEV 305 (364)
Q Consensus 226 ~~~~~~~~~~~~~aiiDtgt~~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~P~i~~~~~g~~~~ 305 (364)
.+..... ..++|||||++++||.+++++|.+++++. ... + .|.++|.....+|+|+|+| +|.++
T Consensus 216 ~~~~~~~----~~aiiDSGTs~~~lP~~~~~~l~~~~~~~---~~~--g------~~~~~C~~~~~~P~i~f~f-~g~~~ 279 (351)
T 1tzs_A 216 VMFCSEG----CQAIVDTGTSLITGPSDKIKQLQNAIGAA---PVD--G------EYAVECANLNVMPDVTFTI-NGVPY 279 (351)
T ss_dssp EEECTTC----EEEEECTTCSSEEECHHHHHHHHHHHTCE---ECS--S------SEEECGGGGGGSCCEEEEE-TTEEE
T ss_pred eEEcCCC----ceEEeccCCcceeCCHHHHHHHHHHhCCc---ccC--C------eEEEeCCCCccCCcEEEEE-CCEEE
Confidence 8643221 35999999999999999999999998665 111 1 2667787777899999999 78999
Q ss_pred EeCCCceEEEcCC--CeEEE-EEEcCC---CCCCeeEecccceeeeEEEEECCCCEEEEEeCCCC
Q 017894 306 DVDVTGIMFPIRA--SQVCL-AFAGNS---DPSDVGIFGNVQQHTLEVVYDVAHGQVGFAAGGCS 364 (364)
Q Consensus 306 ~i~~~~~~~~~~~--~~~C~-~~~~~~---~~~~~~ilG~~fl~~~y~vfD~~~~rigfa~~~c~ 364 (364)
+|++++|+++... +..|+ +|...+ ...+.||||.+|||++|+|||++++|||||+++|+
T Consensus 280 ~i~~~~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~rigfA~~~~~ 344 (351)
T 1tzs_A 280 TLSPTAYTLLDFVDGMQFCSSGFQGLDIHPPAGPLWILGDVFIRQFYSVFDRGNNRVGLAPAVPW 344 (351)
T ss_dssp EECTTTSEECC-----CCEEESEEECCCCTTTCSCEEECHHHHHHEEEEEETTTTEEEEEEBC--
T ss_pred EECHHHhEeeccCCCCCeEEEEEEECCCCCCCCCeEEEChHHhhheEEEEECCCCEEEEEECCcc
Confidence 9999999997532 45898 677653 13567999999999999999999999999999985
No 4
>2x0b_A Renin; hydrolase-hormone complex, hydrolase hormone complex, vasoconstrictor, glycoprotein, hypertension, serpins; 4.33A {Homo sapiens}
Probab=100.00 E-value=1.9e-58 Score=434.82 Aligned_cols=304 Identities=21% Similarity=0.360 Sum_probs=256.9
Q ss_pred cccccccCCccCCccEEEEEEeCCCCcEEEEEEEcCCcceeEeCCCcc---cCcCCCCCCCCCCCCCCcccccCCCCCcc
Q 017894 7 ATLPAIHGSVVGSGNYIVTVGIGTPKRKFSLIFDTGSDLTWTQCKPCV---GFCYQQKEKIFDPKRSKSYRNVSCSSTVC 83 (364)
Q Consensus 7 ~~~p~~~~~~~~~~~y~~~i~iGtP~q~~~~~~DTgS~~~wv~~~~c~---~~c~~~~~~~y~~s~Sst~~~~~~~~~~c 83 (364)
..+||+ ++.+.+|+++|.||||||++.|+|||||+++||+|..|. ..|..+ ..|||++|+||+..
T Consensus 51 ~~~~l~---n~~~~~Y~~~I~IGTP~Q~f~vi~DTGSs~lWV~s~~C~~~~~~C~~~--~~y~~~~SsT~~~~------- 118 (383)
T 2x0b_A 51 SSVILT---NYMDTQYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYH--KLFDASDSSSYKHN------- 118 (383)
T ss_dssp CEEEEE---EETTTEEEEEEEETTTTEEEEEEEETTCCCEEEEBTTSCTTSHHHHTS--CCBCGGGCTTCEEE-------
T ss_pred ceEeee---ecCCCEEEEEEEECCCCcEEEEEEeCCCCCeEEeccCCCCCcccccCC--CCCCCCCCCcEEEC-------
Confidence 456776 678899999999999999999999999999999999995 379766 89999999999986
Q ss_pred CCcccCCCCCCCCCCCCcceeeEEeCCCCceEEEEEEEEEEecCCCccCCeEEeeccCCCC-C--CCCcCeEEecCCCCC
Q 017894 84 SSLESATGNIPGCASNKTCVYGIQYGDSSFSVGFFAKETLTLTSKDVFPKFLLGCGQNNRG-L--FRGAAGLLGLGRNKI 160 (364)
Q Consensus 84 ~~~~~~~~~~~~c~~~~~~~~~~~y~~g~~~~G~~~~D~v~i~~~~~~~~~~fg~a~~~~~-~--~~~~~GilGLg~~~~ 160 (364)
.|.|.+.|++|+ +.|.+++|+|+|++ +.++ +.||++....+ . ...++||||||++.+
T Consensus 119 -----------------~~~~~i~Yg~Gs-~~G~~~~Dtv~ig~-~~v~-~~Fg~a~~~~g~~f~~~~~dGIlGLg~~~~ 178 (383)
T 2x0b_A 119 -----------------GTELTLRYSTGT-VSGFLSQDIITVGG-ITVT-QMFGEVTEMPALPFMLAEFDGVVGMGFIEQ 178 (383)
T ss_dssp -----------------EEEEEEECSSCE-EEEEEEEEEEEETT-EEEE-EEEEEEEECCHHHHTTCSSSEEEECSCGGG
T ss_pred -----------------CcEEEEEcCCcc-EEEEEEeeEEEEcC-ceEE-EEEEEEEecCCcccccCCCceEeccCCCcc
Confidence 589999999997 89999999999999 6899 99999998754 1 247899999999876
Q ss_pred h------hHHHhhhhc---CCcEEEeCCCCCCC----ceeEEeCCCCC----CCceEeecccCCCCCcceEEEeeEEEEC
Q 017894 161 S------LVYQTASKY---KKRFSYCLPSSSSS----TGHLTFGPGIK----KSVKFTPLSSAFQGSSFYGLDMTGISVG 223 (364)
Q Consensus 161 s------~~~q~~~~~---~~~fsl~l~~~~~~----~g~l~fGg~d~----~~l~~~p~~~~~~~~~~w~v~l~~i~v~ 223 (364)
+ +..++..+. +++||+||.+.... +|.|+|||+|+ +++.|+|+.. ..+|+|.|++|+|+
T Consensus 179 s~~~~~~~~~~l~~qg~i~~~~FS~~L~~~~~~~~~~~G~l~fGg~d~~~y~G~l~~~pv~~----~~~w~v~l~~i~v~ 254 (383)
T 2x0b_A 179 AIGRVTPIFDNIISQGVLKEDVFSFYYNRDSENSQSLGGQIVLGGSDPQHYEGNFHYINLIK----TGVWQIQMKGVSVG 254 (383)
T ss_dssp CGGGCCCHHHHHHTTTCCSSSEEEEEECCSCC----CCEEEEESSCCGGGEEEEEEEEEBSS----TTSCEEEECEEEES
T ss_pred ccCCCCcHHHHHHhCCCCCCCEEEEEEcCCCCcccCCCcEEEECCcChHHcCCceEEEEcCC----CceEEEEEeEEEeC
Confidence 5 445555442 69999999886433 89999999995 6999999987 68999999999999
Q ss_pred CEEeeeccccCCCCCEEEecCCcceecChhHHHHHHHHHHHHHhcCCCCCCccccccceeccCCccccCCeEEEEEcCCc
Q 017894 224 GEKLPIATTVFSTPGTIIDSGTVITRLPPHAYTVLKTAFRQLMSKYPTAPAVSILDTCYDFSEHETITIPKISFFFNGGV 303 (364)
Q Consensus 224 ~~~~~~~~~~~~~~~aiiDtgt~~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~P~i~~~~~g~~ 303 (364)
++.+..... ..|||||||+++++|.+++++|.+++++. . ..+. |.++|.....+|+|+|+| +|.
T Consensus 255 ~~~~~~~~~----~~aiiDTGTs~~~lP~~~~~~i~~~i~a~---~--~~g~------~~v~C~~~~~~P~i~f~~-~g~ 318 (383)
T 2x0b_A 255 SSTLLCEDG----CLALVDTGASYISGSTSSIEKLMEALGAK---K--RLFD------YVVKCNEGPTLPDISFHL-GGK 318 (383)
T ss_dssp SCCCBSTTC----EEEEECTTCSSEEECHHHHHHHHHHHTCE---E--CSSC------EEEEGGGTTTCCCEEEEE-TTE
T ss_pred CceEEcCCC----cEEEEcCCCceEEcCHHHHHHHHHHhCCc---c--cCCc------EEEeccccccCceEEEEE-CCE
Confidence 987432221 36999999999999999999999999765 1 2222 566777777899999999 789
Q ss_pred EEEeCCCceEEEcCC--CeEEE-EEEcCC---CCCCeeEecccceeeeEEEEECCCCEEEEEeCC
Q 017894 304 EVDVDVTGIMFPIRA--SQVCL-AFAGNS---DPSDVGIFGNVQQHTLEVVYDVAHGQVGFAAGG 362 (364)
Q Consensus 304 ~~~i~~~~~~~~~~~--~~~C~-~~~~~~---~~~~~~ilG~~fl~~~y~vfD~~~~rigfa~~~ 362 (364)
+++|++++|+++... +..|+ +|...+ ...+.||||.+|||++|+|||++++|||||+++
T Consensus 319 ~~~l~~~~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~~ILGd~Fl~~~y~vfD~~~~rIGfA~a~ 383 (383)
T 2x0b_A 319 EYTLTSADYVFQESYSSKKLCTLAIHAMDIPPPTGPTWALGATFIRKFYTEFDRRNNRIGFALAR 383 (383)
T ss_dssp EEEECHHHHBCCCCCCTTSEEEBSEEECCCCTTTCSCEEECHHHHTTEEEEEETTTTEEEEEEEC
T ss_pred EEEECHHHhEeeccCCCCCeEEEEEEecccCCCCCCcEEEChHHhcceEEEEECCCCEEeEEEcC
Confidence 999999999988542 46899 687653 135679999999999999999999999999974
No 5
>3aup_A SBG7S, BG, basic 7S globulin; pepsin-like fold, plant protein; 1.91A {Glycine max}
Probab=100.00 E-value=1.7e-57 Score=433.13 Aligned_cols=338 Identities=23% Similarity=0.437 Sum_probs=268.7
Q ss_pred CCcccccccCCccCCccEEEEEEeCCCCcEEEEEEEcCCcceeEeCCCcccCcCCCCCCCCCCCCCCcccccCCCCCccC
Q 017894 5 GAATLPAIHGSVVGSGNYIVTVGIGTPKRKFSLIFDTGSDLTWTQCKPCVGFCYQQKEKIFDPKRSKSYRNVSCSSTVCS 84 (364)
Q Consensus 5 ~~~~~p~~~~~~~~~~~y~~~i~iGtP~q~~~~~~DTgS~~~wv~~~~c~~~c~~~~~~~y~~s~Sst~~~~~~~~~~c~ 84 (364)
..+.+||+. +..+++|+++|.||||+|++.|+|||||+++||+|..| .+|+|++.++|.+..|.
T Consensus 8 ~~~~~pl~~--~~~~~~Y~~~i~iGTP~Q~~~v~~DTGSs~lWv~~~~~--------------~~Sst~~~~~C~s~~C~ 71 (403)
T 3aup_A 8 NLVVLPVQN--DGSTGLHWANLQKRTPLMQVPVLVDLNGNHLWVNCEQQ--------------YSSKTYQAPFCHSTQCS 71 (403)
T ss_dssp CCEEEEEEE--CTTTCCEEEEEEETTTTEEEEEEEETTCSSEEEECSSC--------------CCCSSCBCCCTTBHHHH
T ss_pred ccEEEeeec--CCCCceEEEEEECCCCCceeEEEEECCCCceeECCCCC--------------CCCCCCCccCCCCcccc
Confidence 467889984 56889999999999999999999999999999998754 37899999999998898
Q ss_pred CcccC------CCCCCCCCCCCcceeeEEeC-CCCceEEEEEEEEEEecCC----------CccCCeEEeeccCCC---C
Q 017894 85 SLESA------TGNIPGCASNKTCVYGIQYG-DSSFSVGFFAKETLTLTSK----------DVFPKFLLGCGQNNR---G 144 (364)
Q Consensus 85 ~~~~~------~~~~~~c~~~~~~~~~~~y~-~g~~~~G~~~~D~v~i~~~----------~~~~~~~fg~a~~~~---~ 144 (364)
....+ +...+.|.. +.|.|.+.|+ +++.+.|.+++|+|+|++. ..++++.|||+.... .
T Consensus 72 ~~~~~~c~~c~~~~~s~~~~-~~~~~~~~Y~~d~~~~~G~~~~Dtv~ig~~~g~~~~~~~~~~v~~~~Fg~~~~~~~~~~ 150 (403)
T 3aup_A 72 RANTHQCLSCPAASRPGCHK-NTCGLMSTNPITQQTGLGELGEDVLAIHATQGSTQQLGPLVTVPQFLFSCAPSFLVQKG 150 (403)
T ss_dssp HTTCCCEEECSSSCBTTBCS-SEEEEEEEETTTTEEEEEEEEEEEEEEEECCC----CCCEEEEEEEEEEEECGGGGSSS
T ss_pred CccccCccccCCCCCCCCCC-CcceeEeecCCCCceeeEEEEEEEEEecccCCccccccccccccCEEEECCcccccccC
Confidence 77665 223344643 4799999998 6777999999999999872 367899999998863 3
Q ss_pred CCCCcCeEEecCCCCChhHHHhhhhc--CCcEEEeCCCCCCCceeEEeCCCCC-------C-----CceEeecccCCCCC
Q 017894 145 LFRGAAGLLGLGRNKISLVYQTASKY--KKRFSYCLPSSSSSTGHLTFGPGIK-------K-----SVKFTPLSSAFQGS 210 (364)
Q Consensus 145 ~~~~~~GilGLg~~~~s~~~q~~~~~--~~~fsl~l~~~~~~~g~l~fGg~d~-------~-----~l~~~p~~~~~~~~ 210 (364)
.+..++||||||+..++++.|+.... +++||+||.+.....|.|+||+ |+ | ++.|+|+..++ .
T Consensus 151 ~~~~~dGIlGLg~~~~s~~~ql~~~~~~~~~FS~~L~~~~~~~G~l~fGg-d~~~~~~~~G~~~~~~l~~~Pl~~~~--~ 227 (403)
T 3aup_A 151 LPRNTQGVAGLGHAPISLPNQLASHFGLQRQFTTCLSRYPTSKGAIIFGD-APNNMRQFQNQDIFHDLAFTPLTITL--Q 227 (403)
T ss_dssp SSTTCCEEEECSSSTTSHHHHHHHHHTCCSEEEEECCSCTTSCEEEEESC-HHHHC--CTTCCTTTTEEEEECEECT--T
T ss_pred CCCCCceEEECCCCCcCHHHHHHhhcCCCCeEEEEcCCCCCCCeeEEECC-CchhccccccccccCceeecccccCC--C
Confidence 34578999999999999999986542 6899999998655689999999 52 4 89999999854 3
Q ss_pred cceEEEeeEEEECCEEe-eeccccCC-----CCCEEEecCCcceecChhHHHHHHHHHHHHHhcCCCCCCccccccceec
Q 017894 211 SFYGLDMTGISVGGEKL-PIATTVFS-----TPGTIIDSGTVITRLPPHAYTVLKTAFRQLMSKYPTAPAVSILDTCYDF 284 (364)
Q Consensus 211 ~~w~v~l~~i~v~~~~~-~~~~~~~~-----~~~aiiDtgt~~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~c~~~ 284 (364)
.+|.|.|++|+|+++.+ .++...+. .+.+||||||++++||++++++|++++.+.+..++.......+..|+
T Consensus 228 ~~y~v~l~~i~v~g~~~~~~~~~~~~~~~~g~~~aiiDSGTt~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~c~-- 305 (403)
T 3aup_A 228 GEYNVRVNSIRINQHSVFPLNKISSTIVGSTSGGTMISTSTPHMVLQQSVYQAFTQVFAQQLPKQAQVKSVAPFGLCF-- 305 (403)
T ss_dssp SCEEECEEEEEETTEEEECC------------CCEEECSSCSSEEECHHHHHHHHHHHHHTSCGGGEECCCTTCSCEE--
T ss_pred CcceEEEEEEEECCEEcccCChhHeeeccCCCCCEEEECCCccEEeCHHHHHHHHHHHHHHhccccccCCCCCCCceE--
Confidence 69999999999999988 65544331 14699999999999999999999999987643222211112334565
Q ss_pred cCCccccCCeEEEEEcCC--cEEEeCCCceEEEcCCCeEEEEEEcCCCC-CCeeEecccceeeeEEEEECCCCEEEE---
Q 017894 285 SEHETITIPKISFFFNGG--VEVDVDVTGIMFPIRASQVCLAFAGNSDP-SDVGIFGNVQQHTLEVVYDVAHGQVGF--- 358 (364)
Q Consensus 285 ~~~~~~~~P~i~~~~~g~--~~~~i~~~~~~~~~~~~~~C~~~~~~~~~-~~~~ilG~~fl~~~y~vfD~~~~rigf--- 358 (364)
+|.....+|+|+|+|.|+ ++|+|++++|+++..++..|++|+..+.. .+.||||..|||++|+|||++++||||
T Consensus 306 ~c~~~~~~P~i~f~f~g~~~~~~~l~~~~y~~~~~~~~~C~~~~~~~~~~~~~~ILG~~fl~~~yvvfD~~~~rIGf~A~ 385 (403)
T 3aup_A 306 NSNKINAYPSVDLVMDKPNGPVWRISGEDLMVQAQPGVTCLGVMNGGMQPRAEITLGARQLEENLVVFDLARSRVGFSTS 385 (403)
T ss_dssp CGGGCCCCCCEEEEESSTTCCEEEECHHHHEEEC---CEEECEEECCSCCSSSEEECHHHHTTSCEEEETTTTEEEEESS
T ss_pred ECCCcCcCCcEEEEEcCCCceEEEEcccceEEEcCCCeEEEEEEcCCCCCCCcEEEChHHhcCeEEEEECCCCEEEEecc
Confidence 566556899999999554 69999999999987556799988876432 457999999999999999999999999
Q ss_pred ----EeCCCC
Q 017894 359 ----AAGGCS 364 (364)
Q Consensus 359 ----a~~~c~ 364 (364)
++++|+
T Consensus 386 ~~~~~~~~C~ 395 (403)
T 3aup_A 386 SLHSHGVKCA 395 (403)
T ss_dssp CGGGGTCCGG
T ss_pred cccccCCCcc
Confidence 677774
No 6
>1dpj_A Proteinase A; proteinase A, hydrolase-hydrolase inhibitor COM; HET: BMA MAN NAG; 1.80A {Saccharomyces cerevisiae} SCOP: b.50.1.2 PDB: 1dp5_A* 1fmu_A* 1fmx_A* 1fq5_A* 1fq4_A* 1fq6_A* 1fq7_A* 1fq8_A* 2jxr_A* 1g0v_A*
Probab=100.00 E-value=5.2e-57 Score=418.88 Aligned_cols=304 Identities=24% Similarity=0.472 Sum_probs=257.4
Q ss_pred CcccccccCCccCCccEEEEEEeCCCCcEEEEEEEcCCcceeEeCCCccc-CcCCCCCCCCCCCCCCcccccCCCCCccC
Q 017894 6 AATLPAIHGSVVGSGNYIVTVGIGTPKRKFSLIFDTGSDLTWTQCKPCVG-FCYQQKEKIFDPKRSKSYRNVSCSSTVCS 84 (364)
Q Consensus 6 ~~~~p~~~~~~~~~~~y~~~i~iGtP~q~~~~~~DTgS~~~wv~~~~c~~-~c~~~~~~~y~~s~Sst~~~~~~~~~~c~ 84 (364)
..++||+ ++.+..|+++|.||||+|+++|++||||+++||+|..|.. .|..+ ..|+|++|+||+..
T Consensus 2 ~~~~~l~---~~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~lWv~~~~C~~~~C~~~--~~y~~~~SsT~~~~-------- 68 (329)
T 1dpj_A 2 GHDVPLT---NYLNAQYYTDITLGTPPQNFKVILDTGSSNLWVPSNECGSLACFLH--SKYDHEASSSYKAN-------- 68 (329)
T ss_dssp CEEEECE---EETTTEEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSHHHHTS--CCBCGGGCTTCEEE--------
T ss_pred Ccceeee---ecCCCEEEEEEEECCCCcEEEEEEeCCCcCeEEecCCCCCcccCCc--CcCCcccCcCeEEC--------
Confidence 4578887 6778999999999999999999999999999999999943 57765 78999999999985
Q ss_pred CcccCCCCCCCCCCCCcceeeEEeCCCCceEEEEEEEEEEecCCCccCCeEEeeccCCCC-C--CCCcCeEEecCCCCCh
Q 017894 85 SLESATGNIPGCASNKTCVYGIQYGDSSFSVGFFAKETLTLTSKDVFPKFLLGCGQNNRG-L--FRGAAGLLGLGRNKIS 161 (364)
Q Consensus 85 ~~~~~~~~~~~c~~~~~~~~~~~y~~g~~~~G~~~~D~v~i~~~~~~~~~~fg~a~~~~~-~--~~~~~GilGLg~~~~s 161 (364)
.|.|.+.|++|+ +.|.+++|+|+|++ ..++++.||+++...+ . ...++||||||++.++
T Consensus 69 ----------------~~~~~i~Yg~Gs-~~G~~~~D~v~ig~-~~~~~~~fg~~~~~~~~~f~~~~~~GilGLg~~~~s 130 (329)
T 1dpj_A 69 ----------------GTEFAIQYGTGS-LEGYISQDTLSIGD-LTIPKQDFAEATSEPGLTFAFGKFDGILGLGYDTIS 130 (329)
T ss_dssp ----------------EEEEEEEETTEE-EEEEEEEEEEEETT-EEEEEEEEEEEEECCHHHHTTCSCSEEEECSCGGGC
T ss_pred ----------------CcEEEEEECCce-EEEEEEEEEEEECC-eEECCeEEEEEEecCccccccCCcceEEEeCCchhh
Confidence 589999999995 99999999999999 6999999999988754 2 2368999999998765
Q ss_pred h------HHHhhhhc---CCcEEEeCCCCC---CCceeEEeCCCCC----CCceEeecccCCCCCcceEEEeeEEEECCE
Q 017894 162 L------VYQTASKY---KKRFSYCLPSSS---SSTGHLTFGPGIK----KSVKFTPLSSAFQGSSFYGLDMTGISVGGE 225 (364)
Q Consensus 162 ~------~~q~~~~~---~~~fsl~l~~~~---~~~g~l~fGg~d~----~~l~~~p~~~~~~~~~~w~v~l~~i~v~~~ 225 (364)
+ ..++..+. +++||+||.+.. ...|.|+|||+|+ +++.|+|+.. ..+|.|.+++|+|+++
T Consensus 131 ~~~~~~~~~~l~~qg~i~~~~Fs~~l~~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~----~~~~~v~l~~i~v~~~ 206 (329)
T 1dpj_A 131 VDKVVPPFYNAIQQDLLDEKRFAFYLGDTSKDTENGGEATFGGIDESKFKGDITWLPVRR----KAYWEVKFEGIGLGDE 206 (329)
T ss_dssp GGGCCCHHHHHHHTTCCSSSEEEEEECCGGGTCSSSEEEEESSCCGGGEEEEEEEEECSS----BTTBEEEEEEEEETTE
T ss_pred ccCCCCHHHHHHhcCCcCCCEEEEEecCCCCCCCCCcEEEEcCCChhhcCCceEEEEcCC----CceEEEEeeeEEECCe
Confidence 3 34454442 699999998653 2479999999995 6899999987 6799999999999999
Q ss_pred EeeeccccCCCCCEEEecCCcceecChhHHHHHHHHHHHHHhcCCCCCCccccccceeccCCccccCCeEEEEEcCCcEE
Q 017894 226 KLPIATTVFSTPGTIIDSGTVITRLPPHAYTVLKTAFRQLMSKYPTAPAVSILDTCYDFSEHETITIPKISFFFNGGVEV 305 (364)
Q Consensus 226 ~~~~~~~~~~~~~aiiDtgt~~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~P~i~~~~~g~~~~ 305 (364)
.+.... ..++|||||++++||.+++++|.+++++. .. ...||.++|.....+|+|+|+| +|.++
T Consensus 207 ~~~~~~-----~~aiiDSGTt~~~lP~~~~~~l~~~~~~~----~~------~~g~~~~~C~~~~~~P~i~f~f-~g~~~ 270 (329)
T 1dpj_A 207 YAELES-----HGAAIDTGTSLITLPSGLAEMINAEIGAK----KG------WTGQYTLDCNTRDNLPDLIFNF-NGYNF 270 (329)
T ss_dssp EEECSS-----CEEEECTTCSCEEECHHHHHHHHHHHTCE----EC------TTSSEEECGGGGGGCCCEEEEE-TTEEE
T ss_pred EecCCC-----ccEEeeCCCCcEECCHHHHHHHHHHhCCc----cC------CCCeEEEECCCCCcCCcEEEEE-CCEEE
Confidence 876332 35999999999999999999999998654 11 1236888998888899999999 78999
Q ss_pred EeCCCceEEEcCCCeEEE-EEEcCC---CCCCeeEecccceeeeEEEEECCCCEEEEEeCC
Q 017894 306 DVDVTGIMFPIRASQVCL-AFAGNS---DPSDVGIFGNVQQHTLEVVYDVAHGQVGFAAGG 362 (364)
Q Consensus 306 ~i~~~~~~~~~~~~~~C~-~~~~~~---~~~~~~ilG~~fl~~~y~vfD~~~~rigfa~~~ 362 (364)
+|++++|+++.. ..|+ +|...+ ...+.||||.+|||++|+|||++++|||||+++
T Consensus 271 ~i~~~~y~~~~~--~~C~~~~~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~~igfA~~~ 329 (329)
T 1dpj_A 271 TIGPYDYTLEVS--GSCISAITPMDFPEPVGPLAIVGDAFLRKYYSIYDLGNNAVGLAKAI 329 (329)
T ss_dssp EECTTTSEEEET--TEEEECEEECCCCTTTCSEEEECHHHHTTEEEEEETTTTEEEEEEEC
T ss_pred EECHHHhEecCC--CEEEEEEEecccCCCCCCcEEEChHHhcceEEEEECCCCEEEEEECC
Confidence 999999999864 6898 677653 235689999999999999999999999999974
No 7
>3cms_A Chymosin B; hydrolase, acid proteinase; 2.00A {Bos taurus} SCOP: b.50.1.2 PDB: 4cms_A 1czi_E* 1cms_A
Probab=100.00 E-value=1.2e-57 Score=421.95 Aligned_cols=303 Identities=21% Similarity=0.371 Sum_probs=256.7
Q ss_pred CcccccccCCccCCccEEEEEEeCCCCcEEEEEEEcCCcceeEeCCCc-ccCcCCCCCCCCCCCCCCcccccCCCCCccC
Q 017894 6 AATLPAIHGSVVGSGNYIVTVGIGTPKRKFSLIFDTGSDLTWTQCKPC-VGFCYQQKEKIFDPKRSKSYRNVSCSSTVCS 84 (364)
Q Consensus 6 ~~~~p~~~~~~~~~~~y~~~i~iGtP~q~~~~~~DTgS~~~wv~~~~c-~~~c~~~~~~~y~~s~Sst~~~~~~~~~~c~ 84 (364)
..++||+ ++.+.+|+++|.||||+|++.|++||||+++||+|..| ...|..+ +.|+|++|+||+..
T Consensus 3 ~~~~~l~---n~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~C~~~--~~y~~~~SsT~~~~-------- 69 (323)
T 3cms_A 3 VASVPLT---NYLDSQYFGKIYLGTPPQEFTVLFDTGSSDFWVPSIYCKSNACKNH--QRFDPRKSSTFQNL-------- 69 (323)
T ss_dssp CEEEEEE---EETTTEEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSHHHHTS--CCBCGGGCTTCEEE--------
T ss_pred cceeeeE---eccCCEEEEEEEECCCCeEEEEEEeCCccceEEcCCCCCcccccCC--CCCCCccCCCeEEC--------
Confidence 4567887 67889999999999999999999999999999999999 3568765 79999999999986
Q ss_pred CcccCCCCCCCCCCCCcceeeEEeCCCCceEEEEEEEEEEecCCCccCCeEEeeccCCCC-CC--CCcCeEEecCCCCCh
Q 017894 85 SLESATGNIPGCASNKTCVYGIQYGDSSFSVGFFAKETLTLTSKDVFPKFLLGCGQNNRG-LF--RGAAGLLGLGRNKIS 161 (364)
Q Consensus 85 ~~~~~~~~~~~c~~~~~~~~~~~y~~g~~~~G~~~~D~v~i~~~~~~~~~~fg~a~~~~~-~~--~~~~GilGLg~~~~s 161 (364)
.|.|.+.|++|+ +.|.+++|+|+|++ ..++++.||++....+ .+ ...+||||||++.++
T Consensus 70 ----------------~~~~~i~Yg~Gs-~~G~~~~D~v~ig~-~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s 131 (323)
T 3cms_A 70 ----------------GKPLSIHYGTGS-MQGILGYDTVTVSN-IVDIQQTVGLSTQEPGDFFTYAEFDGILGMAYPSLA 131 (323)
T ss_dssp ----------------EEEEEEEETTEE-EEEEEEEEEEEETT-EEEEEEEEEEEEECCSHHHHHSSCSEEEECSCGGGS
T ss_pred ----------------CcEEEEEeCCCC-eEEEEEEEEEEECC-eEEeccEEEEEEecccccccccCCceEEecCcchhh
Confidence 578999999997 89999999999999 6999999999998754 22 378999999998654
Q ss_pred ------hHHHhhhhc---CCcEEEeCCCCCCCceeEEeCCCCC----CCceEeecccCCCCCcceEEEeeEEEECCEEee
Q 017894 162 ------LVYQTASKY---KKRFSYCLPSSSSSTGHLTFGPGIK----KSVKFTPLSSAFQGSSFYGLDMTGISVGGEKLP 228 (364)
Q Consensus 162 ------~~~q~~~~~---~~~fsl~l~~~~~~~g~l~fGg~d~----~~l~~~p~~~~~~~~~~w~v~l~~i~v~~~~~~ 228 (364)
+++++..+. +++||+||.+... .|.|+|||+|+ +++.|+|+.. ..+|.|.+++|+|+++.+.
T Consensus 132 ~~~~~~~~~~l~~q~~i~~~~FS~~l~~~~~-~G~l~fGg~d~~~~~g~l~~~p~~~----~~~~~v~l~~i~v~~~~~~ 206 (323)
T 3cms_A 132 SEYSIPVFDNMMNRHLVAQDLFSVYMDRNGQ-ESMLTLGAIDPSYYTGSLHWVPVTV----QQYWQFTVDSVTISGVVVA 206 (323)
T ss_dssp CTTCCCHHHHHHHTTCSSSSEEEEECCTTSS-CEEEEESCCCGGGEEEEEEEEECSS----BTTBEEEEEEEEETTEEEE
T ss_pred ccCCCCHHHHHHHCCCCCCCEEEEEECCCCC-CEEEEECCCChhhccCceEEEECcc----CCeEEEEEeeEEECCEEee
Confidence 555665542 7999999988644 49999999995 5899999987 6799999999999999876
Q ss_pred eccccCCCCCEEEecCCcceecChhHHHHHHHHHHHHHhcCCCCCCccccccceeccCCccccCCeEEEEEcCCcEEEeC
Q 017894 229 IATTVFSTPGTIIDSGTVITRLPPHAYTVLKTAFRQLMSKYPTAPAVSILDTCYDFSEHETITIPKISFFFNGGVEVDVD 308 (364)
Q Consensus 229 ~~~~~~~~~~aiiDtgt~~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~P~i~~~~~g~~~~~i~ 308 (364)
.+.. ..++|||||++++||.+++++|.+++++.. ...+ .|.++|.....+|+|+|+| +|.+++|+
T Consensus 207 ~~~~----~~aiiDSGTt~~~lP~~~~~~l~~~~~~~~----~~~g------~~~~~C~~~~~~P~i~f~f-~g~~~~i~ 271 (323)
T 3cms_A 207 CEGG----CQAILDTGTSKLVGPSSDILNIQQAIGATQ----NQYG------EFDIDCDNLSYMPTVVFEI-NGKMYPLT 271 (323)
T ss_dssp STTC----EEEEECTTCCSEEECHHHHHHHHHHHTCEE----ETTT------EEEECTTCTTTSCCEEEEE-TTEEEEEC
T ss_pred cCCC----cEEEEecCCccEeCCHHHHHHHHHHhCCee----cCCC------cEEEECCCCccCceEEEEE-CCEEEEEC
Confidence 4332 359999999999999999999999986541 1111 2667888777899999999 78999999
Q ss_pred CCceEEEcCCCeEEE-EEEcCCCCCCeeEecccceeeeEEEEECCCCEEEEEeCC
Q 017894 309 VTGIMFPIRASQVCL-AFAGNSDPSDVGIFGNVQQHTLEVVYDVAHGQVGFAAGG 362 (364)
Q Consensus 309 ~~~~~~~~~~~~~C~-~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~rigfa~~~ 362 (364)
+++|+++ .+..|+ +|...+ ..+.||||.+|||++|+|||++++|||||+++
T Consensus 272 ~~~y~~~--~~~~C~~~i~~~~-~~~~~iLG~~fl~~~y~vfD~~~~~igfA~~~ 323 (323)
T 3cms_A 272 PSAYTSQ--DQGFCTSGFQSEN-HSQKWILGDVFIREYYSVFDRANNLVGLAKAI 323 (323)
T ss_dssp HHHHEEE--ETTEEEESEEEC----CCEEECHHHHTTEEEEEETTTTEEEEEEEC
T ss_pred HHHhccC--CCCEEEEEEEeCC-CCCcEEECHHHhhceEEEEECCCCEEEEEECC
Confidence 9999998 367898 577663 44679999999999999999999999999974
No 8
>1am5_A Pepsin, acid proteinase; aspartyl protease, hydrolase; 2.16A {Gadus morhua} SCOP: b.50.1.2
Probab=100.00 E-value=1.1e-56 Score=415.74 Aligned_cols=302 Identities=23% Similarity=0.405 Sum_probs=257.8
Q ss_pred cccccccCCccCCccEEEEEEeCCCCcEEEEEEEcCCcceeEeCCCcc-cCcCCCCCCCCCCCCCCcccccCCCCCccCC
Q 017894 7 ATLPAIHGSVVGSGNYIVTVGIGTPKRKFSLIFDTGSDLTWTQCKPCV-GFCYQQKEKIFDPKRSKSYRNVSCSSTVCSS 85 (364)
Q Consensus 7 ~~~p~~~~~~~~~~~y~~~i~iGtP~q~~~~~~DTgS~~~wv~~~~c~-~~c~~~~~~~y~~s~Sst~~~~~~~~~~c~~ 85 (364)
.++||+ ++.+.+|+++|.||||+|++.|++||||+++||+|..|. ..|..+ +.|+|++|+|++..
T Consensus 2 ~~~~l~---n~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~C~~~--~~y~~~~SsT~~~~--------- 67 (324)
T 1am5_A 2 VTEQMK---NEADTEYYGVISIGTPPESFKVIFDTGSSNLWVSSSHCSAQACSNH--NKFKPRQSSTYVET--------- 67 (324)
T ss_dssp EEEEEE---EETTTEEEEEEEETTTTEEEEEEEETTCCCEEECBTTCCSHHHHTS--CCBCGGGCTTCEEE---------
T ss_pred ceeeee---cCCCCEEEEEEEECCCCeEEEEEEeCCCcceEEecCCCCcccccCC--CcCCCccCCCeEeC---------
Confidence 467887 678899999999999999999999999999999999994 368765 78999999999986
Q ss_pred cccCCCCCCCCCCCCcceeeEEeCCCCceEEEEEEEEEEecCCCccCCeEEeeccCCCC-CC--CCcCeEEecCCCCCh-
Q 017894 86 LESATGNIPGCASNKTCVYGIQYGDSSFSVGFFAKETLTLTSKDVFPKFLLGCGQNNRG-LF--RGAAGLLGLGRNKIS- 161 (364)
Q Consensus 86 ~~~~~~~~~~c~~~~~~~~~~~y~~g~~~~G~~~~D~v~i~~~~~~~~~~fg~a~~~~~-~~--~~~~GilGLg~~~~s- 161 (364)
.|.|.+.|++|+ +.|.+++|+|++++ ..++++.||++....+ .+ ...+||||||++.++
T Consensus 68 ---------------~~~~~i~Yg~Gs-~~G~~~~D~v~~g~-~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~ 130 (324)
T 1am5_A 68 ---------------GKTVDLTYGTGG-MRGILGQDTVSVGG-GSDPNQELGESQTEPGPFQAAAPFDGILGLAYPSIAA 130 (324)
T ss_dssp ---------------EEEEEEECSSCE-EEEEEEEEEEESSS-SCEEEEEEEEEEECCSTTTTTCSSSEEEECSCGGGCG
T ss_pred ---------------CcEEEEEECCCC-eEEEEEECceeECC-cEEcccEEEEEEecccccccCCCCceEEecCCccccc
Confidence 579999999997 69999999999999 6999999999998754 23 378999999998654
Q ss_pred -----hHHHhhhhc---CCcEEEeCCCCCCCceeEEeCCCCC----CCceEeecccCCCCCcceEEEeeEEEECCEEeee
Q 017894 162 -----LVYQTASKY---KKRFSYCLPSSSSSTGHLTFGPGIK----KSVKFTPLSSAFQGSSFYGLDMTGISVGGEKLPI 229 (364)
Q Consensus 162 -----~~~q~~~~~---~~~fsl~l~~~~~~~g~l~fGg~d~----~~l~~~p~~~~~~~~~~w~v~l~~i~v~~~~~~~ 229 (364)
++.++..+. +++||+||.+.....|.|+|||+|+ +++.|+|+.. ..+|.|.+++|+|+++.+..
T Consensus 131 ~~~~~~~~~l~~qg~i~~~~FS~~l~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~----~~~~~v~l~~i~v~~~~~~~ 206 (324)
T 1am5_A 131 AGAVPVFDNMGSQSLVEKDLFSFYLSGGGANGSEVMLGGVDNSHYTGSIHWIPVTA----EKYWQVALDGITVNGQTAAC 206 (324)
T ss_dssp GGCCCHHHHHHHTTCSSSSEEEEECCSTTCSCEEEEESSCCGGGBCSCCEEEEEEE----ETTEEEEECEEEETTEECCC
T ss_pred cCCCchHHhHHhcCCCCCCEEEEEecCCCCCCcEEEECccCHHHcCCceEEEecCC----CcEEEEEEeEEEECCceeec
Confidence 555665542 7999999998755689999999984 7999999987 67999999999999987542
Q ss_pred ccccCCCCCEEEecCCcceecChhHHHHHHHHHHHHHhcCCCCCCccccccceeccCCccccCCeEEEEEcCCcEEEeCC
Q 017894 230 ATTVFSTPGTIIDSGTVITRLPPHAYTVLKTAFRQLMSKYPTAPAVSILDTCYDFSEHETITIPKISFFFNGGVEVDVDV 309 (364)
Q Consensus 230 ~~~~~~~~~aiiDtgt~~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~P~i~~~~~g~~~~~i~~ 309 (364)
.. ..++|||||++++||.+++++|++++++. . ..+ .|.++|.....+|+|+|+| +|.+++|++
T Consensus 207 ~~-----~~aiiDSGTt~~~lp~~~~~~l~~~~~~~-~----~~g------~~~~~C~~~~~~P~i~f~f-~g~~~~i~~ 269 (324)
T 1am5_A 207 EG-----CQAIVDTGTSKIVAPVSALANIMKDIGAS-E----NQG------EMMGNCASVQSLPDITFTI-NGVKQPLPP 269 (324)
T ss_dssp CC-----EEEEECTTCSSEEECTTTHHHHHHHHTCE-E----CCC------CEECCTTSSSSSCCEEEEE-TTEEEEECH
T ss_pred cC-----ceEEEecCCccEECCHHHHHHHHHHhCCc-c----cCC------cEEEeCCCcccCCcEEEEE-CCEEEEECH
Confidence 22 35999999999999999999999998764 1 111 2667787777899999999 789999999
Q ss_pred CceEEEcCCCeEEE-EEEcCC---CCCCeeEecccceeeeEEEEECCCCEEEEEeCC
Q 017894 310 TGIMFPIRASQVCL-AFAGNS---DPSDVGIFGNVQQHTLEVVYDVAHGQVGFAAGG 362 (364)
Q Consensus 310 ~~~~~~~~~~~~C~-~~~~~~---~~~~~~ilG~~fl~~~y~vfD~~~~rigfa~~~ 362 (364)
++|+++. +..|+ +|...+ ...+.||||.+|||++|+|||++++|||||+++
T Consensus 270 ~~y~~~~--~~~C~~~~~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~~igfa~a~ 324 (324)
T 1am5_A 270 SAYIEGD--QAFCTSGLGSSGVPSNTSELWIFGDVFLRNYYTIYDRTNNKVGFAPAA 324 (324)
T ss_dssp HHHEEES--SSCEEECEEECCSCCSSSCEEEECHHHHHHEEEEEETTTTEEEEEEBC
T ss_pred HHhcccC--CCeEEEEEEECccCCCCCCcEEEChHHhccEEEEEECCCCEEEEEECC
Confidence 9999987 67898 677653 135689999999999999999999999999984
No 9
>1mpp_A Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomucor pusillus} SCOP: b.50.1.2 PDB: 2asi_A* 2rmp_A*
Probab=100.00 E-value=8e-57 Score=422.81 Aligned_cols=311 Identities=21% Similarity=0.348 Sum_probs=259.4
Q ss_pred cccccccCCccCCccEEEEEEeCCCCcEEEEEEEcCCcceeEeCCCcc--cCcCCCCCCCCCCCCCCcccccCCCCCccC
Q 017894 7 ATLPAIHGSVVGSGNYIVTVGIGTPKRKFSLIFDTGSDLTWTQCKPCV--GFCYQQKEKIFDPKRSKSYRNVSCSSTVCS 84 (364)
Q Consensus 7 ~~~p~~~~~~~~~~~y~~~i~iGtP~q~~~~~~DTgS~~~wv~~~~c~--~~c~~~~~~~y~~s~Sst~~~~~~~~~~c~ 84 (364)
..+||+ +..+.+|+++|.||||+|++.|+|||||+++||+|..|. ..|..+ +.|+|++|+||+..
T Consensus 8 ~~~~l~---~~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~C~~~--~~y~~~~SsT~~~~-------- 74 (361)
T 1mpp_A 8 DTPGLY---DFDLEEYAIPVSIGTPGQDFYLLFDTGSSDTWVPHKGCDNSEGCVGK--RFFDPSSSSTFKET-------- 74 (361)
T ss_dssp EEEEEE---ETTTTEEEEEEEETTTTEEEEEEEETTCCCCEEEBTTCCGGGTCCSS--CCBCGGGCTTCEEE--------
T ss_pred ceEEee---cCCCCEEEEEEEECCCCcEEEEEEcCCCCCeEECCCCCCCCccCCCC--CcCCCccCCceEec--------
Confidence 456776 678899999999999999999999999999999999995 478765 89999999999986
Q ss_pred CcccCCCCCCCCCCCCcceeeEEeCCCCceEEEEEEEEEEecCCCccCCeEEeeccCCCC------CC--CCcCeEEecC
Q 017894 85 SLESATGNIPGCASNKTCVYGIQYGDSSFSVGFFAKETLTLTSKDVFPKFLLGCGQNNRG------LF--RGAAGLLGLG 156 (364)
Q Consensus 85 ~~~~~~~~~~~c~~~~~~~~~~~y~~g~~~~G~~~~D~v~i~~~~~~~~~~fg~a~~~~~------~~--~~~~GilGLg 156 (364)
.|.|.+.|++|+ +.|.+++|+|+|++ ..++++.||++....+ .+ ..++||||||
T Consensus 75 ----------------~~~~~i~Yg~Gs-~~G~~~~D~v~~g~-~~v~~~~fg~~~~~~~~~~~~~~~~~~~~~GilGLg 136 (361)
T 1mpp_A 75 ----------------DYNLNITYGTGG-ANGIYFRDSITVGG-ATVKQQTLAYVDNVSGPTAEQSPDSELFLDGIFGAA 136 (361)
T ss_dssp ----------------EEEEEEECSSCE-EEEEEEEEEEEETT-EEEEEEEEEEEEEEESGGGSSCTTCSSCCCEEEECS
T ss_pred ----------------CCeEEEEECCce-EEEEEEEEEEEECC-EEEeceEEEEEEeccCccccccccccCCCCCEEEeC
Confidence 579999999998 89999999999999 7999999999988743 23 3789999999
Q ss_pred CCCCh------------hHHHhhhhc---CCcEEEeCCCCCCCceeEEeCCCCC----CCceEeecccCCCCCcceEEEe
Q 017894 157 RNKIS------------LVYQTASKY---KKRFSYCLPSSSSSTGHLTFGPGIK----KSVKFTPLSSAFQGSSFYGLDM 217 (364)
Q Consensus 157 ~~~~s------------~~~q~~~~~---~~~fsl~l~~~~~~~g~l~fGg~d~----~~l~~~p~~~~~~~~~~w~v~l 217 (364)
++.++ +++++..+. +++||+||.+. ...|.|+|||+|+ +++.|+|+........+|.|.|
T Consensus 137 ~~~~s~~~~~~~~~~~~~~~~l~~~g~i~~~~FS~~l~~~-~~~G~l~fGg~d~~~~~g~l~~~p~~~~~~~~~~~~v~l 215 (361)
T 1mpp_A 137 YPDNTAMEAEYGDTYNTVHVNLYKQGLISSPVFSVYMNTN-DGGGQVVFGGVNNTLLGGDIQYTDVLKSRGGYFFWDAPV 215 (361)
T ss_dssp CGGGSHHHHHHSCCCCCHHHHHHHTTSSSSSEEEEECCCS-SSEEEEEESSCCGGGBSSCCEEEECEEETTEEEEEEEEE
T ss_pred CcccccccccccccCCCHHHHHHHcCCCCCcEEEEEecCC-CCCcEEEEecCChhhcCCceEEEEcccCCCceeEEEEEE
Confidence 97654 344555542 69999999985 4589999999984 7999999988432122899999
Q ss_pred eEEEECCEEeeeccccCCCCCEE-EecCCcceecChhHHHHHHHHHHHHHhcCCCCCCccccccceeccCCccccC-CeE
Q 017894 218 TGISVGGEKLPIATTVFSTPGTI-IDSGTVITRLPPHAYTVLKTAFRQLMSKYPTAPAVSILDTCYDFSEHETITI-PKI 295 (364)
Q Consensus 218 ~~i~v~~~~~~~~~~~~~~~~ai-iDtgt~~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~-P~i 295 (364)
++|+|+++.+..... ..+| |||||++++||.+++++|++++.+. ++...+ .|.++|.....+ |+|
T Consensus 216 ~~i~v~~~~~~~~~~----~~ai~iDSGTt~~~lP~~~~~~l~~~~~~~---~~~~~g------~~~~~C~~~~~~~p~i 282 (361)
T 1mpp_A 216 TGVKIDGSDAVSFDG----AQAFTIDTGTNFFIAPSSFAEKVVKAALPD---ATESQQ------GYTVPCSKYQDSKTTF 282 (361)
T ss_dssp EEEEETTEEEEEEEE----EEEEEEETTCCSEEEEHHHHHHHHHHHCTT---CEEETT------EEEEEHHHHTTCCCEE
T ss_pred eEEEECCeeeccCCC----CEEEEECCCCCceeCCHHHHHHHHHHhCCc---ccCCCC------cEEEECCCcccCCCcE
Confidence 999999988753322 3499 9999999999999999999999765 222221 266677766678 999
Q ss_pred EEEEc-C-----CcEEEeCCCceEEEcC-CCeEEE-EEEcCCCCCCeeEecccceeeeEEEEECCCCEEEEEeCCCC
Q 017894 296 SFFFN-G-----GVEVDVDVTGIMFPIR-ASQVCL-AFAGNSDPSDVGIFGNVQQHTLEVVYDVAHGQVGFAAGGCS 364 (364)
Q Consensus 296 ~~~~~-g-----~~~~~i~~~~~~~~~~-~~~~C~-~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~rigfa~~~c~ 364 (364)
+|+|. + +.+++|++++|+++.. ++..|+ +|... ..+.||||.+|||++|+|||++++|||||+++|+
T Consensus 283 ~f~f~~g~~~~~g~~~~i~~~~y~~~~~~~~~~C~~~i~~~--~~~~~iLG~~fl~~~yvvfD~~~~~igfa~~~~~ 357 (361)
T 1mpp_A 283 SLVLQKSGSSSDTIDVSVPISKMLLPVDKSGETCMFIVLPD--GGNQFIVGNLFLRFFVNVYDFGKNRIGFAPLASG 357 (361)
T ss_dssp EEEEECTTCSSCEEEEEEEGGGGEEECSSSSCEEEESEEEE--SSSCCEEEHHHHTTEEEEEETTTTEEEEEEBCTT
T ss_pred EEEEEcCCcCCCCeEEEECHHHhEEecCCCCCeeEEEEEeC--CCCCEEEChHHhccEEEEEECCCCEEEEEEcccC
Confidence 99994 4 7999999999999864 356898 77765 3457999999999999999999999999999996
No 10
>4aa9_A Chymosin; hydrolase, aspartic peptidase, rennet; HET: NAG; 1.60A {Camelus dromedarius} PDB: 4aa8_A 1czi_E* 1cms_A 4cms_A 3cms_A
Probab=100.00 E-value=5.2e-57 Score=417.44 Aligned_cols=301 Identities=23% Similarity=0.410 Sum_probs=252.8
Q ss_pred ccccccCCccCCccEEEEEEeCCCCcEEEEEEEcCCcceeEeCCCcc-cCcCCCCCCCCCCCCCCcccccCCCCCccCCc
Q 017894 8 TLPAIHGSVVGSGNYIVTVGIGTPKRKFSLIFDTGSDLTWTQCKPCV-GFCYQQKEKIFDPKRSKSYRNVSCSSTVCSSL 86 (364)
Q Consensus 8 ~~p~~~~~~~~~~~y~~~i~iGtP~q~~~~~~DTgS~~~wv~~~~c~-~~c~~~~~~~y~~s~Sst~~~~~~~~~~c~~~ 86 (364)
+.||+ ++.+.+|+++|.||||+|+++|++||||+++||++..|. ..|..+ ..|+|++|+|++..
T Consensus 2 ~~~l~---n~~d~~Y~~~i~iGtP~Q~~~v~~DTGSs~~Wv~~~~C~~~~C~~~--~~y~~~~SsT~~~~---------- 66 (320)
T 4aa9_A 2 REPLT---SYLDSQYFGKIYIGTPPQEFTVVFDTGSSDLWVPSIYCKSNVCKNH--HRFDPRKSSTFRNL---------- 66 (320)
T ss_dssp ---------CCCCCCEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSHHHHTS--CCBCGGGCTTCEEE----------
T ss_pred Cccce---eccCCEEEEEEEECCCCeEEEEEEeCCCCceEEcCCCCCccccCCC--CCCCCCCCcCeEcC----------
Confidence 46776 778999999999999999999999999999999999994 357655 89999999999997
Q ss_pred ccCCCCCCCCCCCCcceeeEEeCCCCceEEEEEEEEEEecCCCccCCeEEeeccCCCC-CC--CCcCeEEecCCCCCh--
Q 017894 87 ESATGNIPGCASNKTCVYGIQYGDSSFSVGFFAKETLTLTSKDVFPKFLLGCGQNNRG-LF--RGAAGLLGLGRNKIS-- 161 (364)
Q Consensus 87 ~~~~~~~~~c~~~~~~~~~~~y~~g~~~~G~~~~D~v~i~~~~~~~~~~fg~a~~~~~-~~--~~~~GilGLg~~~~s-- 161 (364)
.+.|.+.|++|+ +.|.+++|+|+|++ ..++++.||++....+ .+ ..++||||||++.++
T Consensus 67 --------------~~~~~i~Yg~gs-~~G~~~~D~v~ig~-~~v~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~ 130 (320)
T 4aa9_A 67 --------------GKPLSIHYGTGS-MEGFLGYDTVTVSN-IVDPNQTVGLSTEQPGEVFTYSEFDGILGLAYPSLASE 130 (320)
T ss_dssp --------------EEEEEEEETTEE-EEEEEEEEEEEETT-EEEEEEEEEEEEECCSHHHHSCCCSEEEECSCGGGSCT
T ss_pred --------------CcEEEEEECCcE-EEEEEEEEEEEECC-EeecCeEEEEEEEcccccccccCcccEEecCccccccc
Confidence 579999999998 89999999999999 7999999999998765 22 357999999987543
Q ss_pred ----hHHHhhhhc---CCcEEEeCCCCCCCceeEEeCCCCC----CCceEeecccCCCCCcceEEEeeEEEECCEEeeec
Q 017894 162 ----LVYQTASKY---KKRFSYCLPSSSSSTGHLTFGPGIK----KSVKFTPLSSAFQGSSFYGLDMTGISVGGEKLPIA 230 (364)
Q Consensus 162 ----~~~q~~~~~---~~~fsl~l~~~~~~~g~l~fGg~d~----~~l~~~p~~~~~~~~~~w~v~l~~i~v~~~~~~~~ 230 (364)
+++++..+. +++||+||.+. ...|.|+|||+|+ +++.|+|+.. ..+|.|.+++|+|+++.+..+
T Consensus 131 ~~~~~~~~l~~~g~i~~~~Fs~~l~~~-~~~G~l~fGg~d~~~~~g~l~~~p~~~----~~~w~v~l~~i~v~~~~~~~~ 205 (320)
T 4aa9_A 131 YSVPVFDNMMDRHLVARDLFSVYMDRN-GQGSMLTLGAIDPSYYTGSLHWVPVTL----QQYWQFTVDSVTINGVAVACV 205 (320)
T ss_dssp TCCCHHHHHHHTTCSSSSEEEEECCSS-SSCCEEEETCCCGGGEEEEEEEEECSS----BTTBEEEECEEEETTEEEEST
T ss_pred CCCCHHHHHHhCCCCCCceEEEEeCCC-CCCeEEEEcccCHHHccCceEEEEccc----CCceEEEEeEEEECCEEeccC
Confidence 566666552 78999999975 4589999999995 6899999987 679999999999999987644
Q ss_pred cccCCCCCEEEecCCcceecChhHHHHHHHHHHHHHhcCCCCCCccccccceeccCCccccCCeEEEEEcCCcEEEeCCC
Q 017894 231 TTVFSTPGTIIDSGTVITRLPPHAYTVLKTAFRQLMSKYPTAPAVSILDTCYDFSEHETITIPKISFFFNGGVEVDVDVT 310 (364)
Q Consensus 231 ~~~~~~~~aiiDtgt~~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~P~i~~~~~g~~~~~i~~~ 310 (364)
.. ..++|||||++++||.+++++|++++++. .. .. ..|.++|.....+|+|+|+| ++.+++|+++
T Consensus 206 ~~----~~~iiDsGtt~~~lP~~~~~~i~~~~~~~---~~-~~------g~~~~~C~~~~~~p~i~f~f-~g~~~~l~~~ 270 (320)
T 4aa9_A 206 GG----CQAILDTGTSVLFGPSSDILKIQMAIGAT---EN-RY------GEFDVNCGNLRSMPTVVFEI-NGRDYPLSPS 270 (320)
T ss_dssp TC----EEEEECTTCSSEEEEHHHHHHHHHHTTCE---EC-TT------SCEEECGGGGGGCCCEEEEE-TTEEEEECHH
T ss_pred CC----cEEEEECCCCcEECCHHHHHHHHHHhCCc---cc-CC------CcEEEeCCCCCcCceEEEEE-CCEEEEECHH
Confidence 22 35999999999999999999999998654 11 11 13778888888899999999 7899999999
Q ss_pred ceEEEcCCCeEEE-EEEcCCCCCCeeEecccceeeeEEEEECCCCEEEEEeCC
Q 017894 311 GIMFPIRASQVCL-AFAGNSDPSDVGIFGNVQQHTLEVVYDVAHGQVGFAAGG 362 (364)
Q Consensus 311 ~~~~~~~~~~~C~-~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~rigfa~~~ 362 (364)
+|+.+. +..|+ +|... ...+.||||.+|||++|+|||++++|||||+|+
T Consensus 271 ~y~~~~--~~~C~~~i~~~-~~~~~~ilG~~fl~~~y~vfD~~~~~igfA~a~ 320 (320)
T 4aa9_A 271 AYTSKD--QGFCTSGFQGD-NNSELWILGDVFIREYYSVFDRANNRVGLAKAI 320 (320)
T ss_dssp HHEEEE--TTEEEESEEEE-TTCCCEEECHHHHTTEEEEEETTTTEEEEEEEC
T ss_pred HhccCC--CCeEEEEEEcC-CCCCcEEEChHHhcceEEEEECCCCEEEEEecC
Confidence 999873 57898 56664 344579999999999999999999999999974
No 11
>1j71_A Candidapepsin, aspartic proteinase; candida tropicalis aspartic protease, SAPT1, hydrolase; 1.80A {Candida tropicalis} SCOP: b.50.1.2
Probab=100.00 E-value=1.7e-56 Score=416.11 Aligned_cols=298 Identities=23% Similarity=0.358 Sum_probs=252.3
Q ss_pred CcccccccCCccCCccEEEEEEeCCCCcEEEEEEEcCCcceeEeCC--Cccc--------CcCCCCCCCCCCCCCCcccc
Q 017894 6 AATLPAIHGSVVGSGNYIVTVGIGTPKRKFSLIFDTGSDLTWTQCK--PCVG--------FCYQQKEKIFDPKRSKSYRN 75 (364)
Q Consensus 6 ~~~~p~~~~~~~~~~~y~~~i~iGtP~q~~~~~~DTgS~~~wv~~~--~c~~--------~c~~~~~~~y~~s~Sst~~~ 75 (364)
.+++||+. ++.+|+++|.||||+|++.|+|||||+++||++. .|.. .|..+ +.|+|++|+|++.
T Consensus 2 ~~~~~l~~----~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~~~C~~~~~~~~~~~C~~~--~~y~~~~SsT~~~ 75 (334)
T 1j71_A 2 DVPTTLIN----EGPSYAADIVVGSNQQKQTVVIDTGSSDLWVVDTDAECQVTYSGQTNNFCKQE--GTFDPSSSSSAQN 75 (334)
T ss_dssp CEEEEEEE----CSSSEEEEEEETTTTEEEEEEEETTCCCEEEEEEEEEECCCSTTCCTTGGGSS--CCBCGGGCTTCEE
T ss_pred ceeEEEec----CCcEEEEEEEEcCCCcEEEEEEcCCCCCEEEecCCCCCcCcccccccccccCC--CcCCcccCCCccc
Confidence 46788873 3689999999999999999999999999999876 6742 57654 7899999999998
Q ss_pred cCCCCCccCCcccCCCCCCCCCCCCcceeeEEeCCCCceEEEEEEEEEEecCCCccCCeEEeeccCCCCCCCCcCeEEec
Q 017894 76 VSCSSTVCSSLESATGNIPGCASNKTCVYGIQYGDSSFSVGFFAKETLTLTSKDVFPKFLLGCGQNNRGLFRGAAGLLGL 155 (364)
Q Consensus 76 ~~~~~~~c~~~~~~~~~~~~c~~~~~~~~~~~y~~g~~~~G~~~~D~v~i~~~~~~~~~~fg~a~~~~~~~~~~~GilGL 155 (364)
. .|.|.+.|++|+.+.|.+++|+|+|++ ..++++.||++.... ..+|||||
T Consensus 76 ~------------------------~~~~~i~Yg~Gs~~~G~~~~D~v~~g~-~~~~~~~fg~~~~~~----~~~GilGL 126 (334)
T 1j71_A 76 L------------------------NQDFSIEYGDLTSSQGSFYKDTVGFGG-ISIKNQQFADVTTTS----VDQGIMGI 126 (334)
T ss_dssp E------------------------EEEEEEEBTTSCEEEEEEEEEEEEETT-EEEEEEEEEEEEEES----SSSCEEEC
T ss_pred C------------------------CCceEEEECCCCEEEEEEEEEEEEECC-EEEccEEEEEEEecC----CCccEEEE
Confidence 6 579999999998789999999999999 699999999998764 57999999
Q ss_pred CCCCC--------hhHHHhhhhc---CCcEEEeCCCCCCCceeEEeCCCCC----CCceEeecccCCCCCcceEEEeeEE
Q 017894 156 GRNKI--------SLVYQTASKY---KKRFSYCLPSSSSSTGHLTFGPGIK----KSVKFTPLSSAFQGSSFYGLDMTGI 220 (364)
Q Consensus 156 g~~~~--------s~~~q~~~~~---~~~fsl~l~~~~~~~g~l~fGg~d~----~~l~~~p~~~~~~~~~~w~v~l~~i 220 (364)
|++.+ +++.|+..+. +++||+||.+.....|.|+|||+|+ +++.|+|+.. ..+|.|.+++|
T Consensus 127 g~~~~~~~~~~~~~~~~~L~~qg~i~~~~Fs~~l~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~----~~~~~v~l~~i 202 (334)
T 1j71_A 127 GFTADEAGYNLYDNVPVTLKKQGIINKNAYSLYLNSEDASTGKIIFGGVDNAKYTGTLTALPVTS----SVELRVHLGSI 202 (334)
T ss_dssp SCGGGSSTTCCCCCHHHHHHHTTSCSSSEEEEECCCTTCSEEEEEETEEETTSEEEEEEEEECCC----SSSCEEEEEEE
T ss_pred cCCcccCccccCCcHHHHHHHCCCCCccEEEEEeCCCCCCCeEEEEeeechHHccCceEEEEccC----CCeEEEEEeEE
Confidence 99764 5677777653 6899999987655689999999985 5899999987 56899999999
Q ss_pred EECCEEeeeccccCCCCCEEEecCCcceecChhHHHHHHHHHHHHHhcCCCCCCcccccccee-ccCCccccCCeEEEEE
Q 017894 221 SVGGEKLPIATTVFSTPGTIIDSGTVITRLPPHAYTVLKTAFRQLMSKYPTAPAVSILDTCYD-FSEHETITIPKISFFF 299 (364)
Q Consensus 221 ~v~~~~~~~~~~~~~~~~aiiDtgt~~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~c~~-~~~~~~~~~P~i~~~~ 299 (364)
+|+++.+..+. .++|||||++++||.+++++|++++.+.. .... ..|. ++|.. +|+|+|+|
T Consensus 203 ~v~g~~~~~~~------~~iiDSGTt~~~lP~~~~~~l~~~~~~~~---~~~~------~~~~~~~C~~---~p~i~f~f 264 (334)
T 1j71_A 203 NFDGTSVSTNA------DVVLDSGTTITYFSQSTADKFARIVGATW---DSRN------EIYRLPSCDL---SGDAVFNF 264 (334)
T ss_dssp EETTEEEEEEE------EEEECTTCSSEEECHHHHHHHHHHHTCEE---ETTT------TEEECSSSCC---CSEEEEEE
T ss_pred EECCEeccCCc------cEEEeCCCCcEecCHHHHHHHHHHcCCcc---cCCC------ceEEEEcCCC---CCceEEEE
Confidence 99999876542 49999999999999999999999998763 1111 1255 67753 89999999
Q ss_pred cCCcEEEeCCCceEEEcCCCeEEE-EEEcCCCCCCeeEecccceeeeEEEEECCCCEEEEEeCCCC
Q 017894 300 NGGVEVDVDVTGIMFPIRASQVCL-AFAGNSDPSDVGIFGNVQQHTLEVVYDVAHGQVGFAAGGCS 364 (364)
Q Consensus 300 ~g~~~~~i~~~~~~~~~~~~~~C~-~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~rigfa~~~c~ 364 (364)
.+|.+++|++++|+++...+..|+ ++... +.||||.+|||++|++||++++|||||+++|+
T Consensus 265 ~~g~~~~i~~~~y~~~~~~~~~C~~~i~~~----~~~iLG~~fl~~~y~vfD~~~~~igfA~~~~~ 326 (334)
T 1j71_A 265 DQGVKITVPLSELILKDSDSSICYFGISRN----DANILGDNFLRRAYIVYDLDDKTISLAQVKYT 326 (334)
T ss_dssp STTCEEEEEGGGGEEECSSSSCEEESEEEC----TTCEECHHHHTTEEEEEETTTTEEEEEEECCC
T ss_pred cCCcEEEECHHHheeecCCCCeeEEEEeEC----CCcEEChHhhccEEEEEECCCCEEEEEecCCC
Confidence 768999999999999865455698 45543 35999999999999999999999999999995
No 12
>3fv3_A SAPP1P-secreted aspartic protease 1; secreted aspartic protease, virulence factor, H; HET: STA; 1.85A {Candida parapsilosis} SCOP: b.50.1.0 PDB: 3tne_A*
Probab=100.00 E-value=2.6e-56 Score=416.05 Aligned_cols=302 Identities=23% Similarity=0.352 Sum_probs=254.6
Q ss_pred CcccccccCCccCCccEEEEEEeCCCCcEEEEEEEcCCcceeEeCCC--cc--cCcCCCCCCCCCCCCCCcccccCCCCC
Q 017894 6 AATLPAIHGSVVGSGNYIVTVGIGTPKRKFSLIFDTGSDLTWTQCKP--CV--GFCYQQKEKIFDPKRSKSYRNVSCSST 81 (364)
Q Consensus 6 ~~~~p~~~~~~~~~~~y~~~i~iGtP~q~~~~~~DTgS~~~wv~~~~--c~--~~c~~~~~~~y~~s~Sst~~~~~~~~~ 81 (364)
.+++||+. ++.+|+++|.||||+|+++|++||||+++||++.. |. ..|..+ +.|+|++|+||+..
T Consensus 2 ~i~~~l~~----~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~~Wv~~~~~~C~~~~~C~~~--~~y~~~~SsT~~~~----- 70 (339)
T 3fv3_A 2 SISLSLIN----EGPSYASKVSVGSNKQQQTVIIDTGSSDFWVVDSNAQCGKGVDCKSS--GTFTPSSSSSYKNL----- 70 (339)
T ss_dssp CEEEEEEE----CSSSEEEEEEETTTTEEEEEEEETTCCCEEEEEEEEEECTTCCTTTT--CCBCGGGCTTCEEE-----
T ss_pred ceeeEEEc----CCCEEEEEEEEcCCCcEEEEEEeCCCCceEEecCCCCCCCCCCCCCC--CcCCCccCcceeeC-----
Confidence 46788874 35789999999999999999999999999998553 42 357654 89999999999997
Q ss_pred ccCCcccCCCCCCCCCCCCcceeeEEeCCCCceEEEEEEEEEEecCCCccCCeEEeeccCCCCCCCCcCeEEecCCCCCh
Q 017894 82 VCSSLESATGNIPGCASNKTCVYGIQYGDSSFSVGFFAKETLTLTSKDVFPKFLLGCGQNNRGLFRGAAGLLGLGRNKIS 161 (364)
Q Consensus 82 ~c~~~~~~~~~~~~c~~~~~~~~~~~y~~g~~~~G~~~~D~v~i~~~~~~~~~~fg~a~~~~~~~~~~~GilGLg~~~~s 161 (364)
.+.|.+.|++|+.+.|.+++|+|+|++ ..++++.||++..... .+||||||++..+
T Consensus 71 -------------------~~~~~i~Yg~gs~~~G~~~~D~v~~g~-~~v~~~~fg~~~~~~~----~~GilGLg~~~~~ 126 (339)
T 3fv3_A 71 -------------------GAAFTIRYGDGSTSQGTWGKDTVTING-VSITGQQIADVTQTSV----DQGILGIGYTSNE 126 (339)
T ss_dssp -------------------EEEEEEECTTSCEEEEEEEEEEEEETT-EEEEEEEEEEEEEESS----SSCEEECSCGGGC
T ss_pred -------------------CceEEEEECCCceEEEEEEEEEEEECC-EEECceEEEEEEecCC----CceeEEecCcccc
Confidence 579999999997799999999999999 6999999999998763 6999999997643
Q ss_pred ----------------hHHHhhhhc---CCcEEEeCCCCCCCceeEEeCCCCC----CCceEeecccCCCCCcceEEEee
Q 017894 162 ----------------LVYQTASKY---KKRFSYCLPSSSSSTGHLTFGPGIK----KSVKFTPLSSAFQGSSFYGLDMT 218 (364)
Q Consensus 162 ----------------~~~q~~~~~---~~~fsl~l~~~~~~~g~l~fGg~d~----~~l~~~p~~~~~~~~~~w~v~l~ 218 (364)
++.|+..+. +++||+||.+.....|.|+|||+|+ +++.|+|+.. ..+|.|.++
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~L~~~g~i~~~~fsl~l~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~----~~~~~v~l~ 202 (339)
T 3fv3_A 127 AVYDTSGRQTTPNYDNVPVTLKKQGKIRTNAYSLYLNSPSAETGTIIFGGVDNAKYSGKLVAEQVTS----SQALTISLA 202 (339)
T ss_dssp CCBCTTSCBCSCCCCCHHHHHHHTTSCSSSEEEEECCCTTCSEEEEEETEEETTSBSSCCEEEEBCC----SSSCEEEEE
T ss_pred ccccccccccCccCCcHHHHHHHCCCCCCceEEEEECCCCCCCeEEEEeeechHHeecceEEEeccc----CccEEEEEE
Confidence 677777663 6899999998766699999999884 6999999988 568999999
Q ss_pred EEEECCEEeeeccccCCCCCEEEecCCcceecChhHHHHHHHHHHHHHhcCCCCCCccccccceeccCCccccCCeEEEE
Q 017894 219 GISVGGEKLPIATTVFSTPGTIIDSGTVITRLPPHAYTVLKTAFRQLMSKYPTAPAVSILDTCYDFSEHETITIPKISFF 298 (364)
Q Consensus 219 ~i~v~~~~~~~~~~~~~~~~aiiDtgt~~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~P~i~~~ 298 (364)
+|+|+++.+.... .++|||||++++||.+++++|++++.+.........+ .|.++|.. ..+|+|+|+
T Consensus 203 ~i~v~g~~~~~~~------~~iiDSGtt~~~lP~~~~~~i~~~~~~~~~~~~~~~~------~~~~~C~~-~~~p~i~f~ 269 (339)
T 3fv3_A 203 SVNLKGSSFSFGD------GALLDSGTTLTYFPSDFAAQLADKAGARLVQVARDQY------LYFIDCNT-DTSGTTVFN 269 (339)
T ss_dssp EEEESSCEEEEEE------EEEECTTBSSEEECHHHHHHHHHHHTCEEEEEETTEE------EEEECTTC-CCCSEEEEE
T ss_pred EEEECCEeecCCc------cEEEeCCCCCEecCHHHHHHHHHHcCCEEccccccCc------eEEEecCC-CCCCcEEEE
Confidence 9999999886542 4999999999999999999999999865221001111 26667775 468999999
Q ss_pred EcCCcEEEeCCCceEEEcCCCeEEE-EEEcCCCCCCeeEecccceeeeEEEEECCCCEEEEEeCCCC
Q 017894 299 FNGGVEVDVDVTGIMFPIRASQVCL-AFAGNSDPSDVGIFGNVQQHTLEVVYDVAHGQVGFAAGGCS 364 (364)
Q Consensus 299 ~~g~~~~~i~~~~~~~~~~~~~~C~-~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~rigfa~~~c~ 364 (364)
|.++.+++||+++|+++.. +..|+ +|.. .+.||||.+|||++|++||++++|||||+++|+
T Consensus 270 f~~g~~~~v~~~~~~~~~~-~~~C~~~i~~----~~~~ilG~~fl~~~y~vfD~~~~~igfA~~~~~ 331 (339)
T 3fv3_A 270 FGNGAKITVPNTEYVYQNG-DGTCLWGIQP----SDDTILGDNFLRHAYLLYNLDANTISIAQVKYT 331 (339)
T ss_dssp ETTSCEEEEEGGGGEEECS-SSCEEESEEE----CSSCEECHHHHTTEEEEEETTTTEEEEEEBCCC
T ss_pred ECCCCEEEECHHHheeeCC-CCeEEEEEEe----CCcEEeChHHHhCEEEEEECCCCEEEEEecCCC
Confidence 9658999999999999853 45796 6765 246999999999999999999999999999996
No 13
>2qzx_A Candidapepsin-5; aspartic proteinase, aspartyl protease, CL PAIR of basic residues, glycoprotein, protease, secreted; HET: STA; 2.50A {Candida albicans}
Probab=100.00 E-value=3.2e-56 Score=415.71 Aligned_cols=301 Identities=22% Similarity=0.372 Sum_probs=252.4
Q ss_pred CcccccccCCccCCccEEEEEEeCCCCcEEEEEEEcCCcceeEeCC--Ccc--------cCcCCCCCCCCCCCCCCcccc
Q 017894 6 AATLPAIHGSVVGSGNYIVTVGIGTPKRKFSLIFDTGSDLTWTQCK--PCV--------GFCYQQKEKIFDPKRSKSYRN 75 (364)
Q Consensus 6 ~~~~p~~~~~~~~~~~y~~~i~iGtP~q~~~~~~DTgS~~~wv~~~--~c~--------~~c~~~~~~~y~~s~Sst~~~ 75 (364)
.+++|++. ++.+|+++|.||||+|++.|+|||||+++||++. .|. ..|..+ +.|+|++|+|++.
T Consensus 2 ~v~~~l~~----~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~~~C~~~~~~~~~~~C~~~--~~y~~~~SsT~~~ 75 (342)
T 2qzx_A 2 PVAVTLHN----EAITYTADITVGSDNQKLNVIVDTGSSDLWIPDSNVICIPKWRGDKGDFCKSA--GSYSPASSRTSQN 75 (342)
T ss_dssp CEEEEEEE----CSSCEEEEEEETTTTEEEEEEEETTCCCEEEEEEEEEECCCSSSCCTTGGGTT--CCBCGGGCTTCEE
T ss_pred ceeEEEec----CCeEEEEEEEECCCCcEEEEEEeCCCCCeEEecCCCCccCccccCccccccCC--CcCCcccCCCccc
Confidence 45778873 5689999999999999999999999999999866 673 257644 7999999999998
Q ss_pred cCCCCCccCCcccCCCCCCCCCCCCcceeeEEeCCCCceEEEEEEEEEEecCCCccCCeEEeeccCCCCCCCCcCeEEec
Q 017894 76 VSCSSTVCSSLESATGNIPGCASNKTCVYGIQYGDSSFSVGFFAKETLTLTSKDVFPKFLLGCGQNNRGLFRGAAGLLGL 155 (364)
Q Consensus 76 ~~~~~~~c~~~~~~~~~~~~c~~~~~~~~~~~y~~g~~~~G~~~~D~v~i~~~~~~~~~~fg~a~~~~~~~~~~~GilGL 155 (364)
. .|.|.+.|++|+.+.|.+++|+|+|++ ..++++.||++.... ..+|||||
T Consensus 76 ~------------------------~~~~~i~Yg~Gs~~~G~~~~D~v~~g~-~~v~~~~fg~~~~~~----~~~GilGL 126 (342)
T 2qzx_A 76 L------------------------NTRFDIKYGDGSYAKGKLYKDTVGIGG-VSVRDQLFANVWSTS----ARKGILGI 126 (342)
T ss_dssp E------------------------EEEEEEECTTSCEEEEEEEEEEEEETT-EEEEEEEEEEEEEEC----SSSCEEEC
T ss_pred C------------------------CCcEEEEeCCCCeEEEEEEEEEEEECC-EEecceEEEEEEecC----CCcCEEEE
Confidence 7 579999999998789999999999999 699999999999764 57999999
Q ss_pred CCCCC--------hhHHHhhhhc---CCcEEEeCCCCCCCceeEEeCCCCC----CCceEeecccCCCCCcceEEEeeEE
Q 017894 156 GRNKI--------SLVYQTASKY---KKRFSYCLPSSSSSTGHLTFGPGIK----KSVKFTPLSSAFQGSSFYGLDMTGI 220 (364)
Q Consensus 156 g~~~~--------s~~~q~~~~~---~~~fsl~l~~~~~~~g~l~fGg~d~----~~l~~~p~~~~~~~~~~w~v~l~~i 220 (364)
|++.. +++.|+..+. +++||+||.+.....|.|+|||+|+ +++.|+|+.. ..+|.|.+++|
T Consensus 127 g~~~~~~~~~~~~~~~~~L~~qg~i~~~~Fs~~l~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~----~~~~~v~l~~i 202 (342)
T 2qzx_A 127 GFQSGEATEFDYDNLPISLRNQGIIGKAAYSLYLNSAEASTGQIIFGGIDKAKYSGSLVDLPITS----EKKLTVGLRSV 202 (342)
T ss_dssp SCGGGCSSSSCCCCHHHHHHHTTSSSSSEEEEECCCTTCSEEEEEETEEETTSBSSCCEEEECCC----SSSCEEEEEEE
T ss_pred ccccccCCCccCccHHHHHHHCCCcCccEEEEEeCCCCCCCeEEEECccchhhEecceEEEeccC----CceEEEEEeEE
Confidence 99764 6677776653 6899999987655689999999874 6899999987 56899999999
Q ss_pred EECCEEeeeccccCCCCCEEEecCCcceecChhHHHHHHHHHHHHHhcCCCCCCccccccceeccCCccccCCeEEEEEc
Q 017894 221 SVGGEKLPIATTVFSTPGTIIDSGTVITRLPPHAYTVLKTAFRQLMSKYPTAPAVSILDTCYDFSEHETITIPKISFFFN 300 (364)
Q Consensus 221 ~v~~~~~~~~~~~~~~~~aiiDtgt~~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~P~i~~~~~ 300 (364)
+|+++.+..+. .++|||||++++||.+++++|++++.+... +....+ ..|.++|.. +|+|+|+|.
T Consensus 203 ~v~g~~~~~~~------~aiiDSGTt~~~lP~~~~~~l~~~~~~~~~-~~~~~~-----~~~~~~C~~---~p~i~f~f~ 267 (342)
T 2qzx_A 203 NVRGRNVDANT------NVLLDSGTTISYFTRSIVRNILYAIGAQMK-FDSAGN-----KVYVADCKT---SGTIDFQFG 267 (342)
T ss_dssp EETTEEEEEEE------EEEECTTCSSEEECHHHHHHHHHHHTCEEE-ECTTSC-----EEEEECTTC---CCEEEEEET
T ss_pred EECCEecCCCc------CEEEeCCCCCEEcCHHHHHHHHHHhCCeee-eccCCC-----cEEEEECCC---CCcEEEEEC
Confidence 99999876542 499999999999999999999999987632 111111 136677853 899999997
Q ss_pred CCcEEEeCCCceEEEcC-----CCeEEEE-EEcCCCCCCeeEecccceeeeEEEEECCCCEEEEEeCCCC
Q 017894 301 GGVEVDVDVTGIMFPIR-----ASQVCLA-FAGNSDPSDVGIFGNVQQHTLEVVYDVAHGQVGFAAGGCS 364 (364)
Q Consensus 301 g~~~~~i~~~~~~~~~~-----~~~~C~~-~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~rigfa~~~c~ 364 (364)
+|.+++|++++|+++.. .+..|+. +... +.||||.+|||++|++||++++|||||+++|+
T Consensus 268 ~g~~~~i~~~~~~~~~~~~~~~~~~~C~~~i~~~----~~~iLG~~fl~~~y~vfD~~~~~igfA~~~~~ 333 (342)
T 2qzx_A 268 NNLKISVPVSEFLFQTYYTSGKPFPKCEVRIRES----EDNILGDNFLRSAYVVYNLDDKKISMAPVKYT 333 (342)
T ss_dssp TTEEEEEEGGGGEECCBCTTSCBCSSEEESEEEC----SSCEECHHHHTTEEEEEETTTTEEEEEEBCCC
T ss_pred CCcEEEEcHHHhcccccccCCCCCCccEEEEecC----CCcEeChHhhhcEEEEEECCCCEEEEEeeCCC
Confidence 68999999999999731 2357985 5433 35999999999999999999999999999995
No 14
>3k1w_A Renin; protease, alternative splicing, aspartyl protease, cleavage on PAIR of basic residues, disease mutation, disulfide bond, glycoprotein; HET: BFX NDG HSQ; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 3d91_A* 3g70_A* 3g6z_A* 3own_A* 2iko_A* 1bbs_A* 1rne_A* 2bkt_A* 2bks_A* 2iku_A* 2il2_A* 2ren_A* 2v0z_C* 2v10_C* 2v11_C* 2v12_C* 2v13_A* 2v16_C* 3g72_A* 3oot_A* ...
Probab=100.00 E-value=2.1e-56 Score=416.99 Aligned_cols=307 Identities=21% Similarity=0.368 Sum_probs=259.6
Q ss_pred CCCcccccccCCccCCccEEEEEEeCCCCcEEEEEEEcCCcceeEeCCCcc---cCcCCCCCCCCCCCCCCcccccCCCC
Q 017894 4 KGAATLPAIHGSVVGSGNYIVTVGIGTPKRKFSLIFDTGSDLTWTQCKPCV---GFCYQQKEKIFDPKRSKSYRNVSCSS 80 (364)
Q Consensus 4 ~~~~~~p~~~~~~~~~~~y~~~i~iGtP~q~~~~~~DTgS~~~wv~~~~c~---~~c~~~~~~~y~~s~Sst~~~~~~~~ 80 (364)
++.+++||+ ++.+..|+++|.||||+|+++|++||||+++||++..|. ..|..+ ..|+|++|+|++..
T Consensus 5 ~~~~~~~l~---n~~d~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~C~~~--~~y~~~~SsT~~~~---- 75 (341)
T 3k1w_A 5 NTTSSVILT---NYMDTQYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYH--KLFDASDSSSYKHN---- 75 (341)
T ss_dssp CBCEEEEEE---EETTTEEEEEEEETTTTEEEEEEEETTCCCEEEEBTTSCTTCHHHHTS--CCBCGGGCTTCEEE----
T ss_pred CCCccccce---EccCCEEEEEEEEcCCCcEEEEEEeCCCcceEEccCCCCCCCCcccCC--CCCCCCcCcCeeEC----
Confidence 456788998 677899999999999999999999999999999999995 358655 89999999999986
Q ss_pred CccCCcccCCCCCCCCCCCCcceeeEEeCCCCceEEEEEEEEEEecCCCccCCeEEeeccCCCCC---CCCcCeEEecCC
Q 017894 81 TVCSSLESATGNIPGCASNKTCVYGIQYGDSSFSVGFFAKETLTLTSKDVFPKFLLGCGQNNRGL---FRGAAGLLGLGR 157 (364)
Q Consensus 81 ~~c~~~~~~~~~~~~c~~~~~~~~~~~y~~g~~~~G~~~~D~v~i~~~~~~~~~~fg~a~~~~~~---~~~~~GilGLg~ 157 (364)
.+.|.+.|++|+ +.|.+++|+|+|++ ..+ ++.||++...... ...++||||||+
T Consensus 76 --------------------~~~~~i~Yg~gs-~~G~~~~D~v~ig~-~~v-~~~fg~~~~~~~~~~~~~~~~GilGLg~ 132 (341)
T 3k1w_A 76 --------------------GTELTLRYSTGT-VSGFLSQDIITVGG-ITV-TQMFGEVTEMPALPFMLAEFDGVVGMGF 132 (341)
T ss_dssp --------------------EEEEEEEETTEE-EEEEEEEEEEEETT-EEE-EEEEEEEEECCHHHHTTCSSSEEEECSC
T ss_pred --------------------CCEEEEEECCcE-EEEEEEEEEEEECC-cee-eEEEEEEEEccccccccCCcceEEECCc
Confidence 579999999998 99999999999999 688 9999999987642 236799999999
Q ss_pred CCCh------hHHHhhhhc---CCcEEEeCCCCC----CCceeEEeCCCCC----CCceEeecccCCCCCcceEEEeeEE
Q 017894 158 NKIS------LVYQTASKY---KKRFSYCLPSSS----SSTGHLTFGPGIK----KSVKFTPLSSAFQGSSFYGLDMTGI 220 (364)
Q Consensus 158 ~~~s------~~~q~~~~~---~~~fsl~l~~~~----~~~g~l~fGg~d~----~~l~~~p~~~~~~~~~~w~v~l~~i 220 (364)
+..+ +++++..+. +++||+||.+.. ...|.|+|||+|+ +++.|+|+.. ..+|.|.+++|
T Consensus 133 ~~~s~~~~~~~~~~l~~qg~i~~~~Fs~~l~~~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~----~~~w~v~l~~i 208 (341)
T 3k1w_A 133 IEQAIGRVTPIFDNIISQGVLKEDVFSFYYNRDSENSQSLGGQIVLGGSDPQHYEGNFHYINLIK----TGVWQIQMKGV 208 (341)
T ss_dssp GGGCGGGCCCHHHHHHHHTCBSSSEEEEEECCCC-----CCEEEEESSCCGGGEEEEEEEEECSS----TTSCEEEECCE
T ss_pred hhhcccCCCCHHHHHHHCCCCCCCEEEEEEeCCCCcCCCCCCEEEECccChHHccCceEEEecCC----CCEEEEEEeEE
Confidence 8765 455665542 799999998764 3489999999995 6999999987 78999999999
Q ss_pred EECCEEeeeccccCCCCCEEEecCCcceecChhHHHHHHHHHHHHHhcCCCCCCccccccceeccCCccccCCeEEEEEc
Q 017894 221 SVGGEKLPIATTVFSTPGTIIDSGTVITRLPPHAYTVLKTAFRQLMSKYPTAPAVSILDTCYDFSEHETITIPKISFFFN 300 (364)
Q Consensus 221 ~v~~~~~~~~~~~~~~~~aiiDtgt~~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~P~i~~~~~ 300 (364)
+|+++.+..... ..++|||||++++||.+++++|++++++. +. ..+ |.++|.....+|+|+|.|
T Consensus 209 ~v~~~~~~~~~~----~~~iiDsGtt~~~lP~~~~~~i~~~~~~~---~~-~~g-------~~~~C~~~~~~p~i~f~f- 272 (341)
T 3k1w_A 209 SVGSSTLLCEDG----CLALVDTGASYISGSTSSIEKLMEALGAK---KR-LFD-------YVVKCNEGPTLPDISFHL- 272 (341)
T ss_dssp EETTEEEECTTC----EEEEECTTCSSEEECHHHHHHHHHHHTCE---EC-SSC-------EEEEGGGGGGCCCEEEEE-
T ss_pred EECCEEeecCCC----CEEEEECCCChhcCCHHHHHHHHHHcCCe---ec-CCC-------eEEeCCCCCcCCcEEEEE-
Confidence 999997543332 35999999999999999999999999765 21 111 777888777899999999
Q ss_pred CCcEEEeCCCceEEEcC--CCeEEE-EEEcCC---CCCCeeEecccceeeeEEEEECCCCEEEEEeCC
Q 017894 301 GGVEVDVDVTGIMFPIR--ASQVCL-AFAGNS---DPSDVGIFGNVQQHTLEVVYDVAHGQVGFAAGG 362 (364)
Q Consensus 301 g~~~~~i~~~~~~~~~~--~~~~C~-~~~~~~---~~~~~~ilG~~fl~~~y~vfD~~~~rigfa~~~ 362 (364)
+|.+++|++++|+++.. .+..|+ ++...+ ...+.||||.+|||++|+|||++++|||||+++
T Consensus 273 ~g~~~~l~~~~~~~~~~~~~~~~C~~~i~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~~igfA~a~ 340 (341)
T 3k1w_A 273 GGKEYTLTSADYVFQESYSSKKLCTLAIHAMDIPPPTGPTWALGATFIRKFYTEFDRRNNRIGFALAR 340 (341)
T ss_dssp TTEEEEECHHHHBCCSCCCTTSEEEBSEEECCCCTTTCSCEEECHHHHTTEEEEEETTTTEEEEEEEC
T ss_pred CCEEEEECHHHheeEccCCCCCeEEeEEEecccCCCCCCeEEEChHHhcceEEEEeCCCCEEEEEECC
Confidence 78999999999998743 367999 676642 235679999999999999999999999999985
No 15
>1htr_B Gastricsin; aspartyl protease; 1.62A {Homo sapiens} SCOP: b.50.1.2 PDB: 1avf_A
Probab=100.00 E-value=6.5e-56 Score=411.49 Aligned_cols=304 Identities=24% Similarity=0.422 Sum_probs=254.7
Q ss_pred cccccccCCccCCccEEEEEEeCCCCcEEEEEEEcCCcceeEeCCCcc-cCcCCCCCCCCCCCCCCcccccCCCCCccCC
Q 017894 7 ATLPAIHGSVVGSGNYIVTVGIGTPKRKFSLIFDTGSDLTWTQCKPCV-GFCYQQKEKIFDPKRSKSYRNVSCSSTVCSS 85 (364)
Q Consensus 7 ~~~p~~~~~~~~~~~y~~~i~iGtP~q~~~~~~DTgS~~~wv~~~~c~-~~c~~~~~~~y~~s~Sst~~~~~~~~~~c~~ 85 (364)
.++||+ ..+.+|+++|.||||+|++.|++||||+++||+|..|. ..|..+ ..|+|++|+|++..
T Consensus 3 ~~~~l~----~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~lWv~~~~C~~~~C~~~--~~y~~~~SsT~~~~--------- 67 (329)
T 1htr_B 3 TYEPMA----YMDAAYFGEISIGTPPQNFLVLFDTGSSNLWVPSVYCQSQACTSH--SRFNPSESSTYSTN--------- 67 (329)
T ss_dssp CCCGGG----GTTCCEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSHHHHTS--CCBCGGGCTTCEEE---------
T ss_pred ceeeeE----EcCCEEEEEEEECCCCcEEEEEEcCCCccEEEecCCCCCcccCCC--CcCCCccCCCeEEC---------
Confidence 357775 56789999999999999999999999999999999994 358765 89999999999986
Q ss_pred cccCCCCCCCCCCCCcceeeEEeCCCCceEEEEEEEEEEecCCCccCCeEEeeccCCCC-CC--CCcCeEEecCCCCCh-
Q 017894 86 LESATGNIPGCASNKTCVYGIQYGDSSFSVGFFAKETLTLTSKDVFPKFLLGCGQNNRG-LF--RGAAGLLGLGRNKIS- 161 (364)
Q Consensus 86 ~~~~~~~~~~c~~~~~~~~~~~y~~g~~~~G~~~~D~v~i~~~~~~~~~~fg~a~~~~~-~~--~~~~GilGLg~~~~s- 161 (364)
.|.|.+.|++|+ +.|.+++|+|+|++ ..++++.||++....+ .+ ...+||||||++.++
T Consensus 68 ---------------~~~~~i~Yg~gs-~~G~~~~D~v~~g~-~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~ 130 (329)
T 1htr_B 68 ---------------GQTFSLQYGSGS-LTGFFGYDTLTVQS-IQVPNQEFGLSENEPGTNFVYAQFDGIMGLAYPALSV 130 (329)
T ss_dssp ---------------EEEEEEEETTEE-EEEEEEEEEEEETT-EEEEEEEEEEESSCSSGGGGGCSCCEEEECCCCSCCC
T ss_pred ---------------CcEEEEEeCCCC-eEEEEEeeeEEEcc-eEECceEEEEEEEccccccccCCCceEEecCCCcccc
Confidence 579999999997 69999999999999 6999999999998755 23 378999999998754
Q ss_pred -----hHHHhhhhc---CCcEEEeCCCCCCC-ceeEEeCCCCC----CCceEeecccCCCCCcceEEEeeEEEECCEEee
Q 017894 162 -----LVYQTASKY---KKRFSYCLPSSSSS-TGHLTFGPGIK----KSVKFTPLSSAFQGSSFYGLDMTGISVGGEKLP 228 (364)
Q Consensus 162 -----~~~q~~~~~---~~~fsl~l~~~~~~-~g~l~fGg~d~----~~l~~~p~~~~~~~~~~w~v~l~~i~v~~~~~~ 228 (364)
+++|+..+. +++||+||.+.... .|.|+|||+|+ +++.|+|+.. ..+|.|.+++|+|+++.+.
T Consensus 131 ~~~~~~~~~l~~qg~i~~~~Fs~~L~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~----~~~~~v~l~~i~v~~~~~~ 206 (329)
T 1htr_B 131 DEATTAMQGMVQEGALTSPVFSVYLSNQQGSSGGAVVFGGVDSSLYTGQIYWAPVTQ----ELYWQIGIEEFLIGGQASG 206 (329)
T ss_dssp TTCCSHHHHHHHTTCSSSSEEEEEECSSCSSEEEEEEESSCCGGGEEEEEEEEEBCS----SSSCEEEECEEEETTEECC
T ss_pred cCCCCHHHHHHhcCCCCCCEEEEEEcCCCCCCCcEEEEcccCHHHcCCceEEEECCC----CceEEEEEeEEEECCceee
Confidence 556665542 79999999986544 89999999995 6899999987 6799999999999998754
Q ss_pred eccccCCCCCEEEecCCcceecChhHHHHHHHHHHHHHhcCCCCCCccccccceeccCCccccCCeEEEEEcCCcEEEeC
Q 017894 229 IATTVFSTPGTIIDSGTVITRLPPHAYTVLKTAFRQLMSKYPTAPAVSILDTCYDFSEHETITIPKISFFFNGGVEVDVD 308 (364)
Q Consensus 229 ~~~~~~~~~~aiiDtgt~~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~P~i~~~~~g~~~~~i~ 308 (364)
..... ..++|||||++++||.+++++|++++++.. . ..+ -|.++|.....+|+|+|+| +|.+++|+
T Consensus 207 ~~~~~---~~aiiDSGTt~~~lp~~~~~~l~~~~~~~~---~-~~g------~~~~~C~~~~~~P~i~f~f-~g~~~~i~ 272 (329)
T 1htr_B 207 WCSEG---CQAIVDTGTSLLTVPQQYMSALLQATGAQE---D-EYG------QFLVNCNSIQNLPSLTFII-NGVEFPLP 272 (329)
T ss_dssp TTTTC---EEEEECTTCCSEEEEGGGHHHHHHHHTCEE---C-TTS------CEEECGGGGGGSCCEEEEE-TTEEEEEC
T ss_pred ecCCC---ceEEEecCCccEECCHHHHHHHHHHhCCee---c-CCC------eEEEeCCCcccCCcEEEEE-CCEEEEEC
Confidence 11111 359999999999999999999999987652 1 111 1566777777899999999 78999999
Q ss_pred CCceEEEcCCCeEEE-EEEcCC---CCCC-eeEecccceeeeEEEEECCCCEEEEEeCC
Q 017894 309 VTGIMFPIRASQVCL-AFAGNS---DPSD-VGIFGNVQQHTLEVVYDVAHGQVGFAAGG 362 (364)
Q Consensus 309 ~~~~~~~~~~~~~C~-~~~~~~---~~~~-~~ilG~~fl~~~y~vfD~~~~rigfa~~~ 362 (364)
+++|+++.. +.|+ +|...+ ...+ .||||.+|||++|+|||++++|||||+++
T Consensus 273 ~~~y~~~~~--g~C~~~~~~~~~~~~~~~~~~iLG~~fl~~~yvvfD~~~~~igfa~~~ 329 (329)
T 1htr_B 273 PSSYILSNN--GYCTVGVEPTYLSSQNGQPLWILGDVFLRSYYSVYDLGNNRVGFATAA 329 (329)
T ss_dssp HHHHEEECS--SCEEESEEEECCCCTTSSCEEEECHHHHTTEEEEEETTTTEEEEEEEC
T ss_pred HHHhcccCC--CEEEEEEEECCCCCCCCCceEEEChHHhccEEEEEECCCCEEEEEeCC
Confidence 999999875 3898 676543 1234 79999999999999999999999999974
No 16
>1miq_A Plasmepsin; aspartic proteinase zymogen, domain opening, hydrolase; 2.50A {Plasmodium vivax} SCOP: b.50.1.2 PDB: 1ls5_A*
Probab=100.00 E-value=7.4e-56 Score=417.10 Aligned_cols=301 Identities=23% Similarity=0.377 Sum_probs=255.8
Q ss_pred CcccccccCCccCCccEEEEEEeCCCCcEEEEEEEcCCcceeEeCCCcc-cCcCCCCCCCCCCCCCCcccccCCCCCccC
Q 017894 6 AATLPAIHGSVVGSGNYIVTVGIGTPKRKFSLIFDTGSDLTWTQCKPCV-GFCYQQKEKIFDPKRSKSYRNVSCSSTVCS 84 (364)
Q Consensus 6 ~~~~p~~~~~~~~~~~y~~~i~iGtP~q~~~~~~DTgS~~~wv~~~~c~-~~c~~~~~~~y~~s~Sst~~~~~~~~~~c~ 84 (364)
..++||+ +..+..|+++|.||||+|++.|+|||||+++||+|..|. ..|..+ ..|+|++|+||+..
T Consensus 51 ~~~~pl~---~~~~~~Y~~~i~iGTP~Q~~~v~~DTGSs~lWv~~~~C~~~~C~~~--~~y~~~~SsT~~~~-------- 117 (375)
T 1miq_A 51 NDVIELD---DVANIMFYGEGEVGDNHQKFMLIFDTGSANLWVPSKKCNSSGCSIK--NLYDSSKSKSYEKD-------- 117 (375)
T ss_dssp TBCCCGG---GTBCEEEECCCEETTTTEECCEEEETTCCCEEEEBTTCCSSGGGGS--CCBCGGGCTTCEEE--------
T ss_pred cceEEcc---cCCCCEEEEEEEECCCCeEEEEEEeCCCcceEEccCCCCcccccCC--CcCCCccCCceEEC--------
Confidence 3457887 667889999999999999999999999999999999994 568765 89999999999986
Q ss_pred CcccCCCCCCCCCCCCcceeeEEeCCCCceEEEEEEEEEEecCCCccCCeEEeeccC----CCCCC--CCcCeEEecCCC
Q 017894 85 SLESATGNIPGCASNKTCVYGIQYGDSSFSVGFFAKETLTLTSKDVFPKFLLGCGQN----NRGLF--RGAAGLLGLGRN 158 (364)
Q Consensus 85 ~~~~~~~~~~~c~~~~~~~~~~~y~~g~~~~G~~~~D~v~i~~~~~~~~~~fg~a~~----~~~~~--~~~~GilGLg~~ 158 (364)
.|.|.+.|++|+ +.|.+++|+|+|++ ..+++ .||++.. .. .| ..++||||||++
T Consensus 118 ----------------~~~~~i~Yg~Gs-~~G~~~~Dtv~ig~-~~v~~-~Fg~~~~~~~~~~-~f~~~~~dGilGLg~~ 177 (375)
T 1miq_A 118 ----------------GTKVDITYGSGT-VKGFFSKDLVTLGH-LSMPY-KFIEVTDTDDLEP-IYSSVEFDGILGLGWK 177 (375)
T ss_dssp ----------------EEEEEEEETTEE-EEEEEEEEEEEETT-EEEEE-EEEEEEECGGGTT-HHHHSCCCEEEECSSC
T ss_pred ----------------CcEEEEEeCCCe-EEEEEEEEEEEEcC-ceECc-EEEEEEecccccc-ccccCCCceEEeCCCC
Confidence 579999999998 89999999999999 69999 9999998 43 33 378999999998
Q ss_pred CCh------hHHHhhhhc---CCcEEEeCCCCCCCceeEEeCCCCC----CCceEeecccCCCCCcceEEEeeEEEECCE
Q 017894 159 KIS------LVYQTASKY---KKRFSYCLPSSSSSTGHLTFGPGIK----KSVKFTPLSSAFQGSSFYGLDMTGISVGGE 225 (364)
Q Consensus 159 ~~s------~~~q~~~~~---~~~fsl~l~~~~~~~g~l~fGg~d~----~~l~~~p~~~~~~~~~~w~v~l~~i~v~~~ 225 (364)
.++ ++.++..+. +++||+||.+.+...|.|+|||+|+ +++.|+|+.. ..+|.|.++ |+|+++
T Consensus 178 ~~s~~~~~~~~~~l~~qg~i~~~~FS~~L~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~----~~~w~v~l~-i~v~g~ 252 (375)
T 1miq_A 178 DLSIGSIDPIVVELKNQNKIDNALFTFYLPVHDVHAGYLTIGGIEEKFYEGNITYEKLNH----DLYWQIDLD-VHFGKQ 252 (375)
T ss_dssp CTTCSSCCCHHHHHHHTTSSSSSEEEEECCTTCTTEEEEEESSCCGGGEEEEEEEEEBSS----SSSSEEEEE-EEETTE
T ss_pred cccccCCCCHHHHHHhccCcCCCEEEEEecCCCCCCeEEEEcccCHHHcCCceEEEecCC----CceEEEEEE-EEECCE
Confidence 754 456665542 6999999998655689999999995 6899999987 679999999 999998
Q ss_pred EeeeccccCCCCCEEEecCCcceecChhHHHHHHHHHHHHHhcCCCCCCccccccceeccCCccccCCeEEEEEcCCcEE
Q 017894 226 KLPIATTVFSTPGTIIDSGTVITRLPPHAYTVLKTAFRQLMSKYPTAPAVSILDTCYDFSEHETITIPKISFFFNGGVEV 305 (364)
Q Consensus 226 ~~~~~~~~~~~~~aiiDtgt~~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~P~i~~~~~g~~~~ 305 (364)
.+ .. ..++|||||++++||.+++++|++++++. ++...+ .|.++|.. ..+|+|+|.| +|.++
T Consensus 253 ~~--~~-----~~aiiDSGTs~~~lP~~~~~~l~~~~~~~---~~~~~g------~~~~~C~~-~~~P~i~f~f-~g~~~ 314 (375)
T 1miq_A 253 TM--EK-----ANVIVDSGTTTITAPSEFLNKFFANLNVI---KVPFLP------FYVTTCDN-KEMPTLEFKS-ANNTY 314 (375)
T ss_dssp EE--EE-----EEEEECTTBSSEEECHHHHHHHHHHHTCE---ECTTSS------CEEEETTC-TTCCCEEEEC-SSCEE
T ss_pred Ec--cc-----ceEEecCCCccEEcCHHHHHHHHHHhCCc---ccCCCC------eEEEECCC-CCCCcEEEEE-CCEEE
Confidence 87 11 35999999999999999999999999764 232222 25667776 6899999999 78999
Q ss_pred EeCCCceEEEcC--CCeEEE-EEEcCCCCCCeeEecccceeeeEEEEECCCCEEEEEeCC
Q 017894 306 DVDVTGIMFPIR--ASQVCL-AFAGNSDPSDVGIFGNVQQHTLEVVYDVAHGQVGFAAGG 362 (364)
Q Consensus 306 ~i~~~~~~~~~~--~~~~C~-~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~rigfa~~~ 362 (364)
+|++++|+++.. +...|+ +|...+...+.||||.+|||++|+|||++++|||||+++
T Consensus 315 ~l~~~~yi~~~~~~g~~~C~~~~~~~~~~~~~~ILG~~fl~~~yvvfD~~~~riGfA~~~ 374 (375)
T 1miq_A 315 TLEPEYYMNPILEVDDTLCMITMLPVDIDSNTFILGDPFMRKYFTVFDYDKESVGFAIAK 374 (375)
T ss_dssp EECGGGSEEESSSSSCSEEEESEEECCSSSSEEEECHHHHHHEEEEEETTTTEEEEEEEC
T ss_pred EECHHHhEeeccCCCCCeEEEEEEECCCCCCcEEECHHHhccEEEEEECCCCEEEEEEcC
Confidence 999999999864 346998 788764334789999999999999999999999999975
No 17
>3c9x_A Trichoderma reesei aspartic protease; aspartic proteinase, aspartyl protease, hydrolase; 1.70A {Trichoderma reesei} PDB: 3c9y_A* 3emy_A*
Probab=100.00 E-value=7.6e-56 Score=410.77 Aligned_cols=306 Identities=25% Similarity=0.367 Sum_probs=249.2
Q ss_pred ccccccCCccCCccEEEEEEeCCCCcEEEEEEEcCCcceeEeCCCcccCcCCCCCCCCCCCCCCcccccCCCCCccCCcc
Q 017894 8 TLPAIHGSVVGSGNYIVTVGIGTPKRKFSLIFDTGSDLTWTQCKPCVGFCYQQKEKIFDPKRSKSYRNVSCSSTVCSSLE 87 (364)
Q Consensus 8 ~~p~~~~~~~~~~~y~~~i~iGtP~q~~~~~~DTgS~~~wv~~~~c~~~c~~~~~~~y~~s~Sst~~~~~~~~~~c~~~~ 87 (364)
++|++. ....+..|+++|.||||+|++.|+|||||+++||+|..|. .|..+.++.|+|++|+|++.++
T Consensus 4 ~v~~~~-~~~~~~~Y~~~i~iGTP~Q~~~v~~DTGSs~lWv~~~~C~-~~~~~~~~~y~~~~SsT~~~~~---------- 71 (329)
T 3c9x_A 4 SAPNHP-SDSADSEYITSVSIGTPAQVLPLDFDTGSSDLWVFSSETP-KSSATGHAIYTPSKSSTSKKVS---------- 71 (329)
T ss_dssp EEEEEE-SSTTCCCEEEEEEETTTTEEEEEEEETTCCCEEECBTTSC-HHHHTTSCCBCGGGCTTCEECT----------
T ss_pred ceeeec-CCCCCCEEEEEEEECCCCeEEEEEEcCCCCCeEEecCCCC-ccccCCCCcCCcccCcCceEcC----------
Confidence 455551 2567889999999999999999999999999999999994 3554455899999999999863
Q ss_pred cCCCCCCCCCCCCcceeeEEeCCCCceEEEEEEEEEEecCCCccCCeEEeeccCCCCCC---CCcCeEEecCCCCCh---
Q 017894 88 SATGNIPGCASNKTCVYGIQYGDSSFSVGFFAKETLTLTSKDVFPKFLLGCGQNNRGLF---RGAAGLLGLGRNKIS--- 161 (364)
Q Consensus 88 ~~~~~~~~c~~~~~~~~~~~y~~g~~~~G~~~~D~v~i~~~~~~~~~~fg~a~~~~~~~---~~~~GilGLg~~~~s--- 161 (364)
.|.|.+.|++|+.+.|.+++|+|+|++ ..++++.||++....+.+ ...+||||||++.++
T Consensus 72 -------------~~~~~i~Yg~Gs~~~G~~~~D~v~ig~-~~v~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~ 137 (329)
T 3c9x_A 72 -------------GASWSISYGDGSSSSGDVYTDKVTIGG-FSVNTQGVESATRVSTEFVQDTVISGLVGLAFDSGNQVR 137 (329)
T ss_dssp -------------TCBEEEECTTSCEEEEEEEEEEEEETT-EEEEEEEEEEEEEECHHHHHCTTCCEEEECSCGGGCCCB
T ss_pred -------------CCeEEEEeCCCCcEEEEEEEEEEEECC-EEEcceEEEEEEecCccccccCCCceeEEeCcccccccC
Confidence 478999999998789999999999999 699999999999865433 478999999997654
Q ss_pred ------hHHHhhhhc-CCcEEEeCCCCCCCceeEEeCCCCC----CCceEeecccCCCCCcceEEEeeEEEECCEEeeec
Q 017894 162 ------LVYQTASKY-KKRFSYCLPSSSSSTGHLTFGPGIK----KSVKFTPLSSAFQGSSFYGLDMTGISVGGEKLPIA 230 (364)
Q Consensus 162 ------~~~q~~~~~-~~~fsl~l~~~~~~~g~l~fGg~d~----~~l~~~p~~~~~~~~~~w~v~l~~i~v~~~~~~~~ 230 (364)
+.+++..+. +++||+||.+. ..|.|+|||+|+ +++.|+|+... ..+|.|.+++|+|+++.+..
T Consensus 138 ~~~~~~~~~~l~~~i~~~~FS~~l~~~--~~G~l~fGg~d~~~~~g~l~~~p~~~~---~~~~~v~l~~i~v~~~~~~~- 211 (329)
T 3c9x_A 138 PHPQKTWFSNAASSLAEPLFTADLRHG--QNGSYNFGYIDTSVAKGPVAYTPVDNS---QGFWEFTASGYSVGGGKLNR- 211 (329)
T ss_dssp SSCCCCHHHHHHTTSSSSEEEEECCSS--SCEEEEESSCCGGGCSSCEEEEECBCT---TSSCEEEECCEEETTCCCCS-
T ss_pred CCCCCCHHHHHHHhcCCCEEEEEecCC--CCcEEEEeCcChhhcccceEEEEccCC---CceEEEEEeeEEECCEeccC-
Confidence 455665443 69999999863 489999999984 79999999742 57899999999999986542
Q ss_pred cccCCCCCEEEecCCcceecChhHHHHHHHHHHHHHhcCCCCCCccccccceeccCCccccCCeEEEEEcCCcEEEeCCC
Q 017894 231 TTVFSTPGTIIDSGTVITRLPPHAYTVLKTAFRQLMSKYPTAPAVSILDTCYDFSEHETITIPKISFFFNGGVEVDVDVT 310 (364)
Q Consensus 231 ~~~~~~~~aiiDtgt~~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~P~i~~~~~g~~~~~i~~~ 310 (364)
.. ..+||||||++++||.+++++|++++.+.. +....+ -|.++|.. .+|+|+|+| +|.+++||++
T Consensus 212 -~~---~~aiiDSGTt~~~lp~~~~~~i~~~i~~a~--~~~~~~------~~~~~C~~--~~P~i~f~f-~g~~~~ip~~ 276 (329)
T 3c9x_A 212 -NS---IDGIADTGTTLLLLDDNVVDAYYANVQSAQ--YDNQQE------GVVFDCDE--DLPSFSFGV-GSSTITIPGD 276 (329)
T ss_dssp -CC---EEEEECTTCCSEEECHHHHHHHHTTCTTCE--EETTTT------EEEEETTC--CCCCEEEEE-TTEEEEECGG
T ss_pred -CC---ceEEEECCCCcEeCCHHHHHHHHHhCCCcE--EcCCCC------EEEEECCC--CCCcEEEEE-CCEEEEECHH
Confidence 11 359999999999999999999998874331 111111 15567763 789999999 6899999999
Q ss_pred ceEEEcC--CCeEEEE-EEcCCCCCCeeEecccceeeeEEEEECCCCEEEEEeC
Q 017894 311 GIMFPIR--ASQVCLA-FAGNSDPSDVGIFGNVQQHTLEVVYDVAHGQVGFAAG 361 (364)
Q Consensus 311 ~~~~~~~--~~~~C~~-~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~rigfa~~ 361 (364)
+|++... +...|+. |...+ ..+.||||.+|||++|+|||++++|||||+.
T Consensus 277 ~~~~~~~~~~~~~C~~~i~~~~-~~~~~ILG~~fl~~~y~vfD~~~~riGfA~~ 329 (329)
T 3c9x_A 277 LLNLTPLEEGSSTCFGGLQSSS-GIGINIFGDVALKAALVVFDLGNERLGWAQK 329 (329)
T ss_dssp GGEEEESSTTCSEEEESEEECT-TTTSEEECHHHHTTEEEEEETTTTEEEEEEC
T ss_pred HeeeeccCCCCCeEEEEEEcCC-CCCcEEEChHHhccEEEEEECCCCEEeEecC
Confidence 9998753 2479995 66553 4567999999999999999999999999984
No 18
>2apr_A Rhizopuspepsin; hydrolase (aspartic proteinase); 1.80A {Rhizopus microsporus var} SCOP: b.50.1.2 PDB: 3apr_E* 4apr_E* 5apr_E* 6apr_E* 1uh9_A 1uh8_A 1uh7_A
Probab=100.00 E-value=2.8e-55 Score=406.28 Aligned_cols=303 Identities=24% Similarity=0.390 Sum_probs=250.2
Q ss_pred cccccccCCccCCccEEEEEEeCCCCcEEEEEEEcCCcceeEeCCCcccCcCCCCCCCCCCCCCCcccccCCCCCccCCc
Q 017894 7 ATLPAIHGSVVGSGNYIVTVGIGTPKRKFSLIFDTGSDLTWTQCKPCVGFCYQQKEKIFDPKRSKSYRNVSCSSTVCSSL 86 (364)
Q Consensus 7 ~~~p~~~~~~~~~~~y~~~i~iGtP~q~~~~~~DTgS~~~wv~~~~c~~~c~~~~~~~y~~s~Sst~~~~~~~~~~c~~~ 86 (364)
.++|++. +..+..|+++|.||||+|++.|+|||||+++||+|..|.. | .+.++.|+|++|+||+..
T Consensus 4 ~~v~~~~--~~~~~~Y~~~i~iGTP~q~~~v~~DTGSs~lWv~~~~c~~-c-~~~~~~y~~~~SsT~~~~---------- 69 (325)
T 2apr_A 4 GTVPMTD--YGNDIEYYGQVTIGTPGKKFNLDFDTGSSDLWIASTLCTN-C-GSGQTKYDPNQSSTYQAD---------- 69 (325)
T ss_dssp TEEEEEE--ETTTTEEEEEEEETTTTEEEEEEEETTCCCCEEEBTTCSS-C-CTTSCCBCGGGCTTCEEE----------
T ss_pred Cceeeee--cCCCCEEEEEEEECCCCeEEEEEEcCCCCCEEEccCCCch-H-hcCCCCCCcccCCCeeeC----------
Confidence 4566663 6788999999999999999999999999999999999954 5 444589999999999985
Q ss_pred ccCCCCCCCCCCCCcceeeEEeCCCCceEEEEEEEEEEecCCCccCCeEEeeccCCCCCCC--CcCeEEecCCCCCh---
Q 017894 87 ESATGNIPGCASNKTCVYGIQYGDSSFSVGFFAKETLTLTSKDVFPKFLLGCGQNNRGLFR--GAAGLLGLGRNKIS--- 161 (364)
Q Consensus 87 ~~~~~~~~~c~~~~~~~~~~~y~~g~~~~G~~~~D~v~i~~~~~~~~~~fg~a~~~~~~~~--~~~GilGLg~~~~s--- 161 (364)
.|.|.+.|++|+.+.|.+++|+|+|++ ..++++.||++....+.+. ..+||||||++.++
T Consensus 70 --------------~~~~~i~Yg~Gs~~~G~~~~D~v~~g~-~~v~~~~fg~~~~~~~~f~~~~~~GilGLg~~~~s~~~ 134 (325)
T 2apr_A 70 --------------GRTWSISYGDGSSASGILAKDNVNLGG-LLIKGQTIELAKREAASFASGPNDGLLGLGFDTITTVR 134 (325)
T ss_dssp --------------EEEEEEECTTSCEEEEEEEEEEEEETT-EEEEEEEEEEEEEECHHHHTSSCSEEEECSCGGGCSST
T ss_pred --------------CCEEEEEECCCCCEEEEEEEEEEEECC-EEECcEEEEEEeccCcccccCCCceEEEeCCccccccc
Confidence 589999999998789999999999999 6999999999987654332 48999999997654
Q ss_pred ----hHHHhhhhc---CCcEEEeCCCC-CCCceeEEeCCCCC----CCceEeecccCCCCCcceEEEeeEEEECCEEeee
Q 017894 162 ----LVYQTASKY---KKRFSYCLPSS-SSSTGHLTFGPGIK----KSVKFTPLSSAFQGSSFYGLDMTGISVGGEKLPI 229 (364)
Q Consensus 162 ----~~~q~~~~~---~~~fsl~l~~~-~~~~g~l~fGg~d~----~~l~~~p~~~~~~~~~~w~v~l~~i~v~~~~~~~ 229 (364)
+++|+..+. +++||+||.+. ....|.|+|||+|+ +++.|+|+... ..+|.|.+++|+|++ .+..
T Consensus 135 ~~~~~~~~l~~qg~i~~~~FS~~l~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~~---~~~~~v~l~~i~vg~-~~~~ 210 (325)
T 2apr_A 135 GVKTPMDNLISQGLISRPIFGVYLGKAKNGGGGEYIFGGYDSTKFKGSLTTVPIDNS---RGWWGITVDRATVGT-STVA 210 (325)
T ss_dssp TCCCHHHHHHHTTSCSSSEEEEEECCGGGTCCEEEEETCCCGGGBCSCCEEEECBCT---TSSCEEEECEEEETT-EEEE
T ss_pred CCCCHHHHHHhcCCCCCceEEEEecCCCCCCCCEEEEccCCchhccCceEEEEccCC---CCEEEEEEeEEEECC-EecC
Confidence 567776552 69999999653 34589999999984 79999999752 568999999999999 3322
Q ss_pred ccccCCCCCEEEecCCcceecChhHHHHHHHHHHHHHhcCCCCCCccccccceeccCCccccCCeEEEEEcCCcEEEeCC
Q 017894 230 ATTVFSTPGTIIDSGTVITRLPPHAYTVLKTAFRQLMSKYPTAPAVSILDTCYDFSEHETITIPKISFFFNGGVEVDVDV 309 (364)
Q Consensus 230 ~~~~~~~~~aiiDtgt~~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~P~i~~~~~g~~~~~i~~ 309 (364)
. . ..++|||||++++||+++++++++++.+.+. .. + -|.++|.. ..+|+|+|+| +|.+++||+
T Consensus 211 ~--~---~~~iiDSGTs~~~lP~~~~~~~~~~~~~~~~---~~-g------~~~~~C~~-~~~p~i~f~f-~g~~~~ip~ 273 (325)
T 2apr_A 211 S--S---FDGILDTGTTLLILPNNIAASVARAYGASDN---GD-G------TYTISCDT-SAFKPLVFSI-NGASFQVSP 273 (325)
T ss_dssp C--C---EEEEECTTCSSEEEEHHHHHHHHHHHTCEEC---SS-S------CEEECSCG-GGCCCEEEEE-TTEEEEECG
T ss_pred C--C---ceEEEecCCccEECCHHHHHHHHHHHhcccC---CC-C------eEEEECCC-CCCCcEEEEE-CCEEEEECH
Confidence 1 1 3599999999999999999999999877632 11 1 26677764 3589999999 566999999
Q ss_pred CceEEEcCCCeEEEE-EEcCCCCCCeeEecccceeeeEEEEECCCCEEEEEeCC
Q 017894 310 TGIMFPIRASQVCLA-FAGNSDPSDVGIFGNVQQHTLEVVYDVAHGQVGFAAGG 362 (364)
Q Consensus 310 ~~~~~~~~~~~~C~~-~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~rigfa~~~ 362 (364)
++|+++.. +..|+. +...+ .+.||||.+|||++|+|||++++|||||+++
T Consensus 274 ~~~~~~~~-~~~C~~~i~~~~--~~~~iLG~~fl~~~y~vfD~~~~~igfA~~~ 324 (325)
T 2apr_A 274 DSLVFEEF-QGQCIAGFGYGN--WGFAIIGDTFLKNNYVVFNQGVPEVQIAPVA 324 (325)
T ss_dssp GGGEEEEE-TTEEEESEEEES--SSSEEECHHHHTTEEEEEETTTTEEEEEEBC
T ss_pred HHEEEcCC-CCeEEEEEEcCC--CCCEEECHHHhcceEEEEECCCCEEEEEecC
Confidence 99998754 678995 44443 5679999999999999999999999999974
No 19
>1oew_A Endothiapepsin; hydrolase, aspartic proteinase mechanism, atomic resolution, succinimide, anisotropic refinement; HET: SUI; 0.9A {Cryphonectria parasitica} SCOP: b.50.1.2 PDB: 1gkt_A* 1gvt_A* 1gvv_A* 1gvw_A* 1gvx_A* 1gvu_A* 1oex_A* 2jji_A* 2jjj_A* 2vs2_A* 3uri_A* 3urj_A* 3url_A* 3pww_A* 1e80_E* 1e81_E* 1e82_E* 1e5o_E* 1eed_P* 1epl_E* ...
Probab=100.00 E-value=1.4e-55 Score=409.00 Aligned_cols=304 Identities=23% Similarity=0.345 Sum_probs=248.2
Q ss_pred ccccc-cCCccCCccEEEEEEeCCCCcEEEEEEEcCCcceeEeCCCcccCcCCCCCCCCCCCCCCcccccCCCCCccCCc
Q 017894 8 TLPAI-HGSVVGSGNYIVTVGIGTPKRKFSLIFDTGSDLTWTQCKPCVGFCYQQKEKIFDPKRSKSYRNVSCSSTVCSSL 86 (364)
Q Consensus 8 ~~p~~-~~~~~~~~~y~~~i~iGtP~q~~~~~~DTgS~~~wv~~~~c~~~c~~~~~~~y~~s~Sst~~~~~~~~~~c~~~ 86 (364)
++|++ . ...+..|+++|.||||+|++.|+|||||+++||+|..|.. |.. .++.|+|++|+|++.++
T Consensus 4 ~v~~~~~--~~~~~~Y~~~i~iGTP~Q~~~v~~DTGSs~lWv~~~~C~~-~~~-~~~~y~~~~SsT~~~~~--------- 70 (329)
T 1oew_A 4 SATTTPI--DSLDDAYITPVQIGTPAQTLNLDFDTGSSDLWVFSSETTA-SEV-XQTIYTPSKSTTAKLLS--------- 70 (329)
T ss_dssp EEEEEES--STTCCCEEEEEEETTTTEEEEEEEETTCCCEEECBTTSCG-GGC--CCCBCGGGCTTCEEEE---------
T ss_pred eeEeeec--CCCCCEEEEEEEECCCCeEEEEEECCCCCCeEEecCCCCc-ccc-ccCccCCccCccceecC---------
Confidence 45555 3 4477899999999999999999999999999999999943 543 45899999999999863
Q ss_pred ccCCCCCCCCCCCCcceeeEEeCCCCceEEEEEEEEEEecCCCccCCeEEeeccCCCCCC---CCcCeEEecCCCCCh--
Q 017894 87 ESATGNIPGCASNKTCVYGIQYGDSSFSVGFFAKETLTLTSKDVFPKFLLGCGQNNRGLF---RGAAGLLGLGRNKIS-- 161 (364)
Q Consensus 87 ~~~~~~~~~c~~~~~~~~~~~y~~g~~~~G~~~~D~v~i~~~~~~~~~~fg~a~~~~~~~---~~~~GilGLg~~~~s-- 161 (364)
.|.|.+.|++|+.+.|.+++|+|+|++ ..++++.||++....+.+ ..++||||||++.++
T Consensus 71 --------------~~~~~i~Yg~Gs~~~G~~~~D~v~~g~-~~v~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~ 135 (329)
T 1oew_A 71 --------------GATWSISYGDGSSSSGDVYTDTVSVGG-LTVTGQAVESAKKVSSSFTEDSTIDGLLGLAFSTLNTV 135 (329)
T ss_dssp --------------EEEEEEECTTSCEEEEEEEEEEEEETT-EEEEEEEEEEEEEECHHHHHCTTCCEEEECSCGGGCCC
T ss_pred --------------CCeEEEEeCCCCcEEEEEEEEEEEECC-EEEeeeEEEEEEecCccccccCCCceEEEecccccccc
Confidence 478999999998789999999999999 699999999999875433 468999999997654
Q ss_pred -------hHHHhhhhc-CCcEEEeCCCCCCCceeEEeCCCCC----CCceEeecccCCCCCcceEEEeeEEEECCEEeee
Q 017894 162 -------LVYQTASKY-KKRFSYCLPSSSSSTGHLTFGPGIK----KSVKFTPLSSAFQGSSFYGLDMTGISVGGEKLPI 229 (364)
Q Consensus 162 -------~~~q~~~~~-~~~fsl~l~~~~~~~g~l~fGg~d~----~~l~~~p~~~~~~~~~~w~v~l~~i~v~~~~~~~ 229 (364)
+.+|+..+. +++||+||.+. ..|.|+|||+|+ +++.|+|+... ..+|.|.+++|+|+++.+..
T Consensus 136 ~~~~~~~~~~~l~~~i~~~~FS~~L~~~--~~G~l~fGg~d~~~~~g~l~~~p~~~~---~~~~~v~l~~i~v~~~~~~~ 210 (329)
T 1oew_A 136 SPTQQKTFFDNAKASLDSPVFTADLGYH--APGTYNFGFIDTTAYTGSITYTAVSTK---QGFWEWTSTGYAVGSGTFKS 210 (329)
T ss_dssp BSSCCCCHHHHHTTTSSSSEEEEECCSS--SCEEEEESCCCTTSSSSCCEEEECBCT---TSSCEEEEEEEEETTSCCEE
T ss_pred CcCCCCCHHHHHHHhccCcEEEEEccCC--CCeEEEEeccChHhcccceEEEEccCC---CceEEEEEeeEEECCeeccC
Confidence 456665543 69999999863 489999999984 69999999742 57899999999999986642
Q ss_pred ccccCCCCCEEEecCCcceecChhHHHHHHHHHHHHHhcCCCCCCccccccceeccCCccccCCeEEEEEcCCcEEEeCC
Q 017894 230 ATTVFSTPGTIIDSGTVITRLPPHAYTVLKTAFRQLMSKYPTAPAVSILDTCYDFSEHETITIPKISFFFNGGVEVDVDV 309 (364)
Q Consensus 230 ~~~~~~~~~aiiDtgt~~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~P~i~~~~~g~~~~~i~~ 309 (364)
.. ..++|||||++++||.+++++|++++.+.. +....+ -|.++|.. .+|+|+|+| +|++++||+
T Consensus 211 ~~-----~~aiiDSGTt~~~lP~~~~~~l~~~i~~a~--~~~~~g------~~~~~C~~--~~P~i~f~f-gg~~~~ip~ 274 (329)
T 1oew_A 211 TS-----IDGIADTGTTLLYLPATVVSAYWAQVSGAK--SSSSVG------GYVFPCSA--TLPSFTFGV-GSARIVIPG 274 (329)
T ss_dssp EE-----EEEEECTTCCSEEECHHHHHHHHTTSTTCE--EETTTT------EEEEETTC--CCCCEEEEE-TTEEEEECH
T ss_pred CC-----ceEEEeCCCCCEECCHHHHHHHHHhCCCcE--EcCCCC------EEEEECCC--CCCcEEEEE-CCEEEEECH
Confidence 21 349999999999999999999998874321 111111 25567763 789999999 899999999
Q ss_pred CceEEEcC--CCeEEEE-EEcCCCCCCeeEecccceeeeEEEEEC-CCCEEEEEeC
Q 017894 310 TGIMFPIR--ASQVCLA-FAGNSDPSDVGIFGNVQQHTLEVVYDV-AHGQVGFAAG 361 (364)
Q Consensus 310 ~~~~~~~~--~~~~C~~-~~~~~~~~~~~ilG~~fl~~~y~vfD~-~~~rigfa~~ 361 (364)
++|+++.. ....|+. +...+ ..+.||||.+|||++|+|||+ +++|||||++
T Consensus 275 ~~~~~~~~~~~~~~C~~~i~~~~-~~~~~iLG~~fl~~~y~vfD~~~~~riGfA~~ 329 (329)
T 1oew_A 275 DYIDFGPISTGSSSCFGGIQSSA-GIGINIFGDVALKAAFVVFNGATTPTLGFASK 329 (329)
T ss_dssp HHHEEEESSTTCSEEEESEEEST-TTSSEEECHHHHTTEEEEEECSSSCEEEEEEC
T ss_pred HHeeeeecCCCCCeEEEEEEeCC-CCCceEEChHHhcCEEEEEECCCCceEEEecC
Confidence 99998752 3479995 55543 456799999999999999999 9999999985
No 20
>3pvk_A Candidapepsin-2; hydrolase; 1.27A {Candida albicans} SCOP: b.50.1.2 PDB: 1eag_A 3q70_A* 1zap_A* 2qzw_A 2h6t_A* 2h6s_A*
Probab=100.00 E-value=2.3e-55 Score=410.16 Aligned_cols=302 Identities=22% Similarity=0.374 Sum_probs=250.7
Q ss_pred CcccccccCCccCCccEEEEEEeCCCCcEEEEEEEcCCcceeEeCCC--cc--------cCcCCCCCCCCCCCCCCcccc
Q 017894 6 AATLPAIHGSVVGSGNYIVTVGIGTPKRKFSLIFDTGSDLTWTQCKP--CV--------GFCYQQKEKIFDPKRSKSYRN 75 (364)
Q Consensus 6 ~~~~p~~~~~~~~~~~y~~~i~iGtP~q~~~~~~DTgS~~~wv~~~~--c~--------~~c~~~~~~~y~~s~Sst~~~ 75 (364)
.+.+|+.. ++++|+++|.||||+|+++|++||||+++||++.. |. ..|..+ +.|+|++|+|++.
T Consensus 2 ~v~~~l~~----~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~~~C~~~~~~~~~~~C~~~--~~y~~~~SsT~~~ 75 (342)
T 3pvk_A 2 AVPVTLHN----EQVTYAADITVGSNNQKLNVIVDTGSSDLWVPDVNVDCQVTYSDQTADFCKQK--GTYDPSGSSASQD 75 (342)
T ss_dssp CEEEEEEE----CSSSEEEEEEETTTTEEEEEEEETTCCCEEEEEEEEEECCCSTTCCTTGGGTT--CCBCGGGCTTCEE
T ss_pred CcceEEec----CCcEEEEEEEEcCCCcEEEEEEECCCcceEEEcCCCCCcccccccccCCCCCC--CcCCCccCcceee
Confidence 34566653 56899999999999999999999999999998664 52 357654 8999999999999
Q ss_pred cCCCCCccCCcccCCCCCCCCCCCCcceeeEEeCCCCceEEEEEEEEEEecCCCccCCeEEeeccCCCCCCCCcCeEEec
Q 017894 76 VSCSSTVCSSLESATGNIPGCASNKTCVYGIQYGDSSFSVGFFAKETLTLTSKDVFPKFLLGCGQNNRGLFRGAAGLLGL 155 (364)
Q Consensus 76 ~~~~~~~c~~~~~~~~~~~~c~~~~~~~~~~~y~~g~~~~G~~~~D~v~i~~~~~~~~~~fg~a~~~~~~~~~~~GilGL 155 (364)
. .+.|.+.|++|+.+.|.+++|+|+|++ ..++++.||++.... ..+|||||
T Consensus 76 ~------------------------~~~~~i~Yg~gs~~~G~~~~D~v~ig~-~~v~~~~fg~~~~~~----~~~GilGL 126 (342)
T 3pvk_A 76 L------------------------NTPFKIGYGDGSSSQGTLYKDTVGFGG-VSIKNQVLADVDSTS----IDQGILGV 126 (342)
T ss_dssp E------------------------EEEEEEECSSSCEEEEEEEEEEEEETT-EEEEEEEEEEEEEES----SSSCEEEC
T ss_pred c------------------------CCeEEEEecCCCeEEEEEEEEEEEECC-EEecceEEEEEEccC----CCccEEEe
Confidence 7 579999999998799999999999999 799999999998765 57999999
Q ss_pred CCCC-------ChhHHHhhhhc---CCcEEEeCCCCCCCceeEEeCCCCC----CCceEeecccCCCCCcceEEEeeEEE
Q 017894 156 GRNK-------ISLVYQTASKY---KKRFSYCLPSSSSSTGHLTFGPGIK----KSVKFTPLSSAFQGSSFYGLDMTGIS 221 (364)
Q Consensus 156 g~~~-------~s~~~q~~~~~---~~~fsl~l~~~~~~~g~l~fGg~d~----~~l~~~p~~~~~~~~~~w~v~l~~i~ 221 (364)
|++. .+++.|+..+. +++||+||.+.....|.|+|||+|+ +++.|+|+.. ..+|.|.+++|+
T Consensus 127 g~~~~~~~~~~~~~~~~L~~qg~i~~~~fs~~l~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~----~~~~~v~l~~i~ 202 (342)
T 3pvk_A 127 GYKTNEAGGSYDNVPVTLKKQGVIAKNAYSLYLNSPDAATGQIIFGGVDNAKYSGSLIALPVTS----DRELRISLGSVE 202 (342)
T ss_dssp SCGGGCSSCSSCCHHHHHHHTTSSSSSEEEEECCCTTCSEEEEEETEEETTSBSSCCEEEECCC----SSSCEEEEEEEE
T ss_pred cCccccccccCCcHHHHHHhcCCCCCceEEEEeCCCCCCCcEEEECccCccceeeeeEEeecCc----cceEEEEEeEEE
Confidence 9986 35777777653 6899999987666689999999884 6999999988 568999999999
Q ss_pred ECCEEeeeccccCCCCCEEEecCCcceecChhHHHHHHHHHHHHHhcCCCCCCccccccceeccCCccccCCeEEEEEcC
Q 017894 222 VGGEKLPIATTVFSTPGTIIDSGTVITRLPPHAYTVLKTAFRQLMSKYPTAPAVSILDTCYDFSEHETITIPKISFFFNG 301 (364)
Q Consensus 222 v~~~~~~~~~~~~~~~~aiiDtgt~~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~P~i~~~~~g 301 (364)
++++.+..+. ..++|||||++++||.+++++|++++.+..... ..+ ..+|.++|.. .|+|+|+|.+
T Consensus 203 v~g~~~~~~~-----~~~iiDSGtt~~~lP~~~~~~i~~~~~~~~~~~--~~~----~~~~~~~C~~---~p~i~f~f~~ 268 (342)
T 3pvk_A 203 VSGKTINTDN-----VDVLLDSGTTITYLQQDLADQIIKAFNGKLTQD--SNG----NSFYEVDCNL---SGDVVFNFSK 268 (342)
T ss_dssp ETTEEEEEEE-----EEEEECTTCSSEEECHHHHHHHHHHTTCEEEEC--TTS----CEEEEECSCC---CSEEEEEEST
T ss_pred ECCEEecCCC-----ceEEEeCCCCCeecCHHHHHHHHHHcCCeeccc--CCC----ceEEEEecCC---CCceEEEECC
Confidence 9999987653 249999999999999999999999998763211 110 1247777874 5999999965
Q ss_pred CcEEEeCCCceEEEc--CCC---eEEE-EEEcCCCCCCeeEecccceeeeEEEEECCCCEEEEEeCCCC
Q 017894 302 GVEVDVDVTGIMFPI--RAS---QVCL-AFAGNSDPSDVGIFGNVQQHTLEVVYDVAHGQVGFAAGGCS 364 (364)
Q Consensus 302 ~~~~~i~~~~~~~~~--~~~---~~C~-~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~rigfa~~~c~ 364 (364)
+.+++||+++|+++. ..+ ..|+ ++... +.||||.+|||++|++||++++|||||+++|+
T Consensus 269 g~~~~vp~~~~~~~~~~~~g~~~~~C~~~i~~~----~~~ilG~~fl~~~y~vfD~~~~~igfA~~~~~ 333 (342)
T 3pvk_A 269 NAKISVPASEFAASLQGDDGQPYDKCQLLFDVN----DANILGDNFLRSAYIVYDLDDNEISLAQVKYT 333 (342)
T ss_dssp TCEEEEEGGGGEEC----------CEEESEEEC----TTCEECHHHHTTEEEEEETTTTEEEEEEBCCC
T ss_pred CCEEEEcHHHheeeccccCCCcCCeeEEEEeeC----CCeEeCHHHHhcEEEEEECCCCEEEEEecCCC
Confidence 899999999999873 122 6798 45542 46999999999999999999999999999995
No 21
>1qdm_A Prophytepsin; aspartic proteinases, saposin-like domain, zymogen structure, hydrolase; 2.30A {Hordeum vulgare} SCOP: a.64.1.2 b.50.1.2
Probab=100.00 E-value=4.9e-55 Score=422.28 Aligned_cols=318 Identities=23% Similarity=0.411 Sum_probs=256.0
Q ss_pred CcccccccCCccCCccEEEEEEeCCCCcEEEEEEEcCCcceeEeCCCcc--cCcCCCCCCCCCCCCCCcccccCCCCCcc
Q 017894 6 AATLPAIHGSVVGSGNYIVTVGIGTPKRKFSLIFDTGSDLTWTQCKPCV--GFCYQQKEKIFDPKRSKSYRNVSCSSTVC 83 (364)
Q Consensus 6 ~~~~p~~~~~~~~~~~y~~~i~iGtP~q~~~~~~DTgS~~~wv~~~~c~--~~c~~~~~~~y~~s~Sst~~~~~~~~~~c 83 (364)
...+||+ ++.+.+|+++|.||||+|++.|+|||||+++||++..|. ..|..+ +.|+|++|+||+..
T Consensus 41 ~~~~~l~---n~~~~~Y~~~i~IGTP~Q~~~v~~DTGSs~lWV~~~~C~~~~~C~~~--~~y~~~~SsT~~~~------- 108 (478)
T 1qdm_A 41 GDIVALK---NYMNAQYFGEIGVGTPPQKFTVIFDTGSSNLWVPSAKCYFSIACYLH--SRYKAGASSTYKKN------- 108 (478)
T ss_dssp SCSGGGC---CGGGCCEEEEEEETTTTEEEEEEEETTCCCCEEEBTTCCSCGGGGGS--CCBCGGGCTTCBCC-------
T ss_pred CceEEeE---eccCCEEEEEEEECCCCeEEEEEEcCCCcceEEecCCCCCCccccCC--CCCCcccCCCeeeC-------
Confidence 5668887 567889999999999999999999999999999999995 568876 78999999999885
Q ss_pred CCcccCCCCCCCCCCCCcceeeEEeCCCCceEEEEEEEEEEecCCCccCCeEEeeccCCCCC-C--CCcCeEEecCCCCC
Q 017894 84 SSLESATGNIPGCASNKTCVYGIQYGDSSFSVGFFAKETLTLTSKDVFPKFLLGCGQNNRGL-F--RGAAGLLGLGRNKI 160 (364)
Q Consensus 84 ~~~~~~~~~~~~c~~~~~~~~~~~y~~g~~~~G~~~~D~v~i~~~~~~~~~~fg~a~~~~~~-~--~~~~GilGLg~~~~ 160 (364)
.+.|.+.|++|+ +.|.+++|+|+|++ ..++++.||++....+. | ..++||||||++.+
T Consensus 109 -----------------~~~~~i~Yg~Gs-~~G~~~~Dtv~ig~-~~v~~~~Fg~a~~~~~~~f~~~~~dGIlGLg~~~~ 169 (478)
T 1qdm_A 109 -----------------GKPAAIQYGTGS-IAGYFSEDSVTVGD-LVVKDQEFIEATKEPGITFLVAKFDGILGLGFKEI 169 (478)
T ss_dssp -----------------CCEEEEEETTEE-EEEEEEEEEEEETT-EEEEEEEEEEEEECCBSHHHHCSSSEEEECSCGGG
T ss_pred -----------------CcEEEEEcCCCC-eEEEEEEEEEEECC-eEECCEEEEEEEecCCcccccccccceeccccccc
Confidence 578999999997 89999999999999 69999999999876542 2 36799999999876
Q ss_pred hh------HHHhhhhc---CCcEEEeCCCCC--CCceeEEeCCCCC----CCceEeecccCCCCCcceEEEeeEEEECCE
Q 017894 161 SL------VYQTASKY---KKRFSYCLPSSS--SSTGHLTFGPGIK----KSVKFTPLSSAFQGSSFYGLDMTGISVGGE 225 (364)
Q Consensus 161 s~------~~q~~~~~---~~~fsl~l~~~~--~~~g~l~fGg~d~----~~l~~~p~~~~~~~~~~w~v~l~~i~v~~~ 225 (364)
+. ..++..+. +++||+||.+.. ..+|.|+|||+|+ +++.|+|+.. .++|+|.+++|+|+++
T Consensus 170 s~~~~~p~~~~l~~qg~i~~~~FS~~L~~~~~~~~~G~l~fGg~d~~~~~G~l~~~pv~~----~~~w~v~l~~i~v~g~ 245 (478)
T 1qdm_A 170 SVGKAVPVWYKMIEQGLVSDPVFSFWLNRHVDEGEGGEIIFGGMDPKHYVGEHTYVPVTQ----KGYWQFDMGDVLVGGK 245 (478)
T ss_dssp CGGGCCCHHHHHTTTTCCSSSEEEEECCCC-----CEEEEETCCCTTSEEEEEEEEEEEE----ETTEEEEECCEEETTE
T ss_pred ccCCCCcHHHHHHHCCCCCCCEEEEEeecCCCCCCCeEEEeCCcCHhhcCCCceEEeccC----CCeEEEEEeEEEECCE
Confidence 53 34454442 699999998753 3489999999995 5899999987 6799999999999998
Q ss_pred EeeeccccCCCCCEEEecCCcceecChhHHHHHHHHHHHHH----------------------hcCC-------------
Q 017894 226 KLPIATTVFSTPGTIIDSGTVITRLPPHAYTVLKTAFRQLM----------------------SKYP------------- 270 (364)
Q Consensus 226 ~~~~~~~~~~~~~aiiDtgt~~~~lp~~~~~~l~~~l~~~~----------------------~~~~------------- 270 (364)
.+.+.... ..+||||||++++||.+++++|.+++++.. ...+
T Consensus 246 ~~~~~~~~---~~aiiDTGTs~~~lP~~~~~~i~~~i~a~~~~s~~Ck~~v~~yg~~ii~~l~~~~~p~~vC~~iglC~~ 322 (478)
T 1qdm_A 246 STGFCAGG---CAAIADSGTSLLAGPTAIITEINEKIGAAGVVSQECKTIVSQYGQQILDLLLAETQPKKICSQVGLCTF 322 (478)
T ss_dssp ECSTTTTC---EEEEECSSCCSEEECHHHHHHHHHHHTCCCBCCHHHHHHHHHTHHHHHHHHHTTCCHHHHHHHTTCC--
T ss_pred EEeecCCC---ceEEEcCCCCceeCCHHHHHHHHHHhCccccccccccchhhhhhhHHHHhhhhccChhhhhcccccccc
Confidence 86543222 359999999999999999999999886421 0000
Q ss_pred -CC-----------C-------Cc-------------------------------cccccc---------eeccCCcccc
Q 017894 271 -TA-----------P-------AV-------------------------------SILDTC---------YDFSEHETIT 291 (364)
Q Consensus 271 -~~-----------~-------~~-------------------------------~~~~~c---------~~~~~~~~~~ 291 (364)
.. . .. +....| |.++|+....
T Consensus 323 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~C~~Ce~~v~~~~~~l~~n~t~~~I~~~~~~~C~~~~~~~g~~~v~C~~~~~ 402 (478)
T 1qdm_A 323 DGTRGVSAGIRSVVDDEPVKSNGLRADPMCSACEMAVVWMQNQLAQNKTQDLILDYVNQLCNRLPSPMGESAVDCGSLGS 402 (478)
T ss_dssp -------------------------CHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTCBCCSSSCCEECGGGGTT
T ss_pred CccccccccccccccccccccccccccccchHHHHHHHHHHHHHhccccHHHHHHHHHHHhhccCCCCCeEEeecccccc
Confidence 00 0 00 000112 5577887778
Q ss_pred CCeEEEEEcCCcEEEeCCCceEEEcCC--CeEEE-EEEcCC---CCCCeeEecccceeeeEEEEECCCCEEEEEeCC
Q 017894 292 IPKISFFFNGGVEVDVDVTGIMFPIRA--SQVCL-AFAGNS---DPSDVGIFGNVQQHTLEVVYDVAHGQVGFAAGG 362 (364)
Q Consensus 292 ~P~i~~~~~g~~~~~i~~~~~~~~~~~--~~~C~-~~~~~~---~~~~~~ilG~~fl~~~y~vfD~~~~rigfa~~~ 362 (364)
+|+|+|+| +|++++|+|++|+++... ...|+ +|...+ ...+.||||..|||++|+|||++++|||||+++
T Consensus 403 lP~i~f~~-gg~~~~l~p~~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~~ILGd~fl~~~y~vfD~~~~rIGfA~a~ 478 (478)
T 1qdm_A 403 MPDIEFTI-GGKKFALKPEEYILKVGEGAAAQCISGFTAMDIPPPRGPLWILGDVFMGPYHTVFDYGKLRIGFAKAA 478 (478)
T ss_dssp CCCEEEEE-TTEEEEECHHHHEEECSCGGGCCEEESEEECCCCTTSCSEEEECHHHHTTEEEEEETTTTEEEEEEEC
T ss_pred cccEEEEE-CCEEEEEChHHhEEEccCCCCCeEEEEEEeccCCCCCCCcEEECHHHhccEEEEEECCCCEEEEEeCC
Confidence 99999999 789999999999998643 35898 476543 235689999999999999999999999999974
No 22
>3qvc_A Histo-aspartic protease; HAP, plasmepsin, zymogen, hydrolase; 2.10A {Plasmodium falciparum} PDB: 3qvi_A* 3fns_A 3fnt_A* 3fnu_A*
Probab=100.00 E-value=2.5e-55 Score=420.65 Aligned_cols=302 Identities=17% Similarity=0.292 Sum_probs=256.0
Q ss_pred CCcccccccCCccCCccEEEEEEeCCCCcEEEEEEEcCCcceeEeCCCcc-cCcCCCCCCCCCCCCCCcccccCCCCCcc
Q 017894 5 GAATLPAIHGSVVGSGNYIVTVGIGTPKRKFSLIFDTGSDLTWTQCKPCV-GFCYQQKEKIFDPKRSKSYRNVSCSSTVC 83 (364)
Q Consensus 5 ~~~~~p~~~~~~~~~~~y~~~i~iGtP~q~~~~~~DTgS~~~wv~~~~c~-~~c~~~~~~~y~~s~Sst~~~~~~~~~~c 83 (364)
...++||+ +..+..|+++|.||||||++.|++||||+++||++..|. ..|..+ ..|+|++|+|++..
T Consensus 125 ~~~~~pL~---n~~d~~Y~~~I~IGTPpQ~~~vi~DTGSs~lWV~s~~C~s~~C~~~--~~ydps~SsT~~~~------- 192 (451)
T 3qvc_A 125 EFDNVELK---DLANVLSFGEAKLGDNGQKFNFLFHTASSNVWVPSIKCTSESCESK--NHYDSSKSKTYEKD------- 192 (451)
T ss_dssp --CCCCGG---GGBCEEEEEEEEETTTTEEEEEEEESSBCSEEEEBTTCCSGGGTTS--CCBCGGGCTTCEEE-------
T ss_pred cCCcccee---ecCCCEEEEEEEECCCCcEEEEEEcCCCccEEEecCCCCccccCCC--CCCCCCCCcccccC-------
Confidence 34577887 677899999999999999999999999999999999994 568765 89999999999986
Q ss_pred CCcccCCCCCCCCCCCCcceeeEEeCCCCceEEEEEEEEEEecCCCccCCeEEeeccC----CCCCC--CCcCeEEecCC
Q 017894 84 SSLESATGNIPGCASNKTCVYGIQYGDSSFSVGFFAKETLTLTSKDVFPKFLLGCGQN----NRGLF--RGAAGLLGLGR 157 (364)
Q Consensus 84 ~~~~~~~~~~~~c~~~~~~~~~~~y~~g~~~~G~~~~D~v~i~~~~~~~~~~fg~a~~----~~~~~--~~~~GilGLg~ 157 (364)
.+.|.+.|++|+ +.|.++.|+|++++ ..++ +.||++.. ..+ + ...+||||||+
T Consensus 193 -----------------~~~f~i~YgdGs-~~G~~~~Dtv~igg-~~v~-~~Fg~a~~t~~~~~~-f~~~~~dGILGLg~ 251 (451)
T 3qvc_A 193 -----------------DTPVKLTSKAGT-ISGIFSKDLVTIGK-LSVP-YKFIEMTEIVGFEPF-YSESDVDGVFGLGW 251 (451)
T ss_dssp -----------------EEEEEEECSSEE-EEEEEEEEEEEETT-EEEE-EEEEEEEEEEECTTH-HHHSCCCEEEECSS
T ss_pred -----------------CCEEEEEECCCE-EEEEEEEEEEEECC-EEEE-EEEEEEEeccccCCC-ccCCCCCEEEecCC
Confidence 579999999998 99999999999999 6999 99999988 544 3 26799999999
Q ss_pred CCC------hhHHHhhhhc---CCcEEEeCCCCCCCceeEEeCCCCC----CCceEeecccCCCCCcceEEEeeEEEECC
Q 017894 158 NKI------SLVYQTASKY---KKRFSYCLPSSSSSTGHLTFGPGIK----KSVKFTPLSSAFQGSSFYGLDMTGISVGG 224 (364)
Q Consensus 158 ~~~------s~~~q~~~~~---~~~fsl~l~~~~~~~g~l~fGg~d~----~~l~~~p~~~~~~~~~~w~v~l~~i~v~~ 224 (364)
+.+ ++++++..+. +++||+||.+.....|.|+|||+|+ +++.|+|+.. ..+|.|.++ |+|++
T Consensus 252 ~~~s~~~~~~~~~~L~~qg~I~~~~FS~~L~~~~~~~G~l~fGgiD~s~y~G~l~~~pv~~----~~~w~v~l~-I~Vgg 326 (451)
T 3qvc_A 252 KDLSIGSIDPYIVELKTQNKIEQAVYSIYLPPENKNKGYLTIGGIEERFFDGPLNYEKLNH----DLMWQVDLD-VHFGN 326 (451)
T ss_dssp BCSSSSCCCCHHHHHHHTTSSSSSEEEEECCTTCTTEEEEEESSCCGGGEEEEEEEEECSS----TTSSEEEEE-EEETT
T ss_pred CcccccCCCCHHHHHHHcCCCCCCEEEEEEcCCCCCCCEEEECCcchhhcCCceEEEEccc----CCeeEEEEE-EEECC
Confidence 764 3566666652 7899999998766689999999995 6999999987 789999999 99999
Q ss_pred EEeeeccccCCCCCEEEecCCcceecChhHHHHHHHHHHHHHhcCCCCCCccccccceeccCCccccCCeEEEEEcCCcE
Q 017894 225 EKLPIATTVFSTPGTIIDSGTVITRLPPHAYTVLKTAFRQLMSKYPTAPAVSILDTCYDFSEHETITIPKISFFFNGGVE 304 (364)
Q Consensus 225 ~~~~~~~~~~~~~~aiiDtgt~~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~P~i~~~~~g~~~ 304 (364)
+ .... ..++|||||++++||.+++++|++++++. +.... .+|.++|. ...+|+|+|.| +|.+
T Consensus 327 ~-~~~~------~~aiiDSGTt~i~lP~~~~~~i~~~i~a~---~~~~~------g~y~v~C~-~~~~P~itf~f-gg~~ 388 (451)
T 3qvc_A 327 V-SSKK------ANVILDSATSVITVPTEFFNQFVESASVF---KVPFL------SLYVTTCG-NTKLPTLEYRS-PNKV 388 (451)
T ss_dssp E-EEEE------EEEEECTTBSSEEECHHHHHHHHTTTTCE---ECTTS------SCEEEETT-CTTCCCEEEEE-TTEE
T ss_pred c-cCCC------ceEEEeCCCccccCCHHHHHHHHHHcCCe---ecCCC------CeEEeeCC-cCcCCcEEEEE-CCEE
Confidence 8 2111 34999999999999999999999998765 22111 24788898 67899999999 7999
Q ss_pred EEeCCCceEEEcC--CCeEEE-EEEcCCCCCCeeEecccceeeeEEEEECCCCEEEEEeCC
Q 017894 305 VDVDVTGIMFPIR--ASQVCL-AFAGNSDPSDVGIFGNVQQHTLEVVYDVAHGQVGFAAGG 362 (364)
Q Consensus 305 ~~i~~~~~~~~~~--~~~~C~-~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~rigfa~~~ 362 (364)
++||+++|+++.. ++..|+ ++...+...+.||||.+|||++|+|||++++|||||+++
T Consensus 389 i~lp~~~yi~~~~~~~~~~C~~~i~~~~~~~~~~ILG~~FLr~~YvVfD~~n~rIGfA~ak 449 (451)
T 3qvc_A 389 YTLEPKQYLEPLENIFSALCMLNIVPIDLEKNTFVLGDPFMRKYFTVYDYDNHTVGFALAK 449 (451)
T ss_dssp EEECHHHHEEECTTTSTTEEEECEEECCCSTTEEEECHHHHHHEEEEEETTTTEEEEEEEC
T ss_pred EEEcHHHheeecccCCCCeEEEEEEeCCCCCCCEEECHHHhhcEEEEEECCCCEEEEEEcc
Confidence 9999999999853 357898 566654325689999999999999999999999999975
No 23
>2bju_A Plasmepsin II; aspartic proteinase, drug design, malaria, aspartyl protease, glycoprotein, hydrolase, signal, zymogen; HET: IH4; 1.56A {Plasmodium falciparum} SCOP: b.50.1.2 PDB: 1pfz_A 1xdh_A* 1lf3_A 1w6h_A* 1w6i_A* 1lf4_A* 1lf2_A* 1lee_A* 1m43_A* 2igx_A* 1sme_A* 1me6_A* 1xe6_A* 1xe5_A* 2igy_A* 2r9b_A 3f9q_A 3qrv_A 3qs1_A* 2anl_A* ...
Probab=100.00 E-value=1e-54 Score=415.91 Aligned_cols=301 Identities=19% Similarity=0.355 Sum_probs=254.1
Q ss_pred cccccccCCccCCccEEEEEEeCCCCcEEEEEEEcCCcceeEeCCCcc-cCcCCCCCCCCCCCCCCcccccCCCCCccCC
Q 017894 7 ATLPAIHGSVVGSGNYIVTVGIGTPKRKFSLIFDTGSDLTWTQCKPCV-GFCYQQKEKIFDPKRSKSYRNVSCSSTVCSS 85 (364)
Q Consensus 7 ~~~p~~~~~~~~~~~y~~~i~iGtP~q~~~~~~DTgS~~~wv~~~~c~-~~c~~~~~~~y~~s~Sst~~~~~~~~~~c~~ 85 (364)
.++||+ ++.+..|+++|.||||+|++.|++||||+++||+|..|. ..|..+ +.|+|++|+||+..
T Consensus 128 ~~~~L~---n~~~~~Y~~~I~IGTP~Q~~~vi~DTGSs~lWV~~~~C~~~~C~~~--~~ydps~SsT~~~~--------- 193 (453)
T 2bju_A 128 DNIELV---DFQNIMFYGDAEVGDNQQPFTFILDTGSANLWVPSVKCTTAGCLTK--HLYDSSKSRTYEKD--------- 193 (453)
T ss_dssp EEEEEE---EETTTEEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSTTGGGS--CCBCGGGCTTCEEE---------
T ss_pred CceeeE---ecCCCEEEEEEEECCCCeEEEEEEECCCcceEEeccCCCccccCCC--CcCCCccCCceeEC---------
Confidence 457776 667899999999999999999999999999999999994 578765 89999999999986
Q ss_pred cccCCCCCCCCCCCCcceeeEEeCCCCceEEEEEEEEEEecCCCccCCeEEeeccCCC--CC-C--CCcCeEEecCCCCC
Q 017894 86 LESATGNIPGCASNKTCVYGIQYGDSSFSVGFFAKETLTLTSKDVFPKFLLGCGQNNR--GL-F--RGAAGLLGLGRNKI 160 (364)
Q Consensus 86 ~~~~~~~~~~c~~~~~~~~~~~y~~g~~~~G~~~~D~v~i~~~~~~~~~~fg~a~~~~--~~-~--~~~~GilGLg~~~~ 160 (364)
.|.|.+.|++|+ +.|.+++|+|++++ ..++ +.||++.... +. + ..++||||||++.+
T Consensus 194 ---------------~~~~~i~YgdGs-~~G~~~~Dtv~ig~-~~v~-~~Fg~a~~~~~~g~~f~~~~~dGIlGLg~~~~ 255 (453)
T 2bju_A 194 ---------------GTKVEMNYVSGT-VSGFFSKDLVTVGN-LSLP-YKFIEVIDTNGFEPTYTASTFDGILGLGWKDL 255 (453)
T ss_dssp ---------------EEEEEEECSSSE-EEEEEEEEEEEETT-EEEE-EEEEEEEECGGGTTHHHHSSCCEEEECSCGGG
T ss_pred ---------------CcEEEEEcCCCC-eEEEEEEEEEEEeC-cEEE-EEEEEEEEecccCccccccCCceeEeccCCcc
Confidence 579999999998 89999999999999 6899 9999999875 42 2 37899999999765
Q ss_pred h------hHHHhhhhc---CCcEEEeCCCCCCCceeEEeCCCCC----CCceEeecccCCCCCcceEEEeeEEEECCEEe
Q 017894 161 S------LVYQTASKY---KKRFSYCLPSSSSSTGHLTFGPGIK----KSVKFTPLSSAFQGSSFYGLDMTGISVGGEKL 227 (364)
Q Consensus 161 s------~~~q~~~~~---~~~fsl~l~~~~~~~g~l~fGg~d~----~~l~~~p~~~~~~~~~~w~v~l~~i~v~~~~~ 227 (364)
+ +++++..+. +++||+||.+.+...|.|+|||+|+ +++.|+|+.. ..+|.|.++ |+|+++ +
T Consensus 256 s~~~~~~~~~~L~~qg~i~~~~FS~~L~~~~~~~G~l~fGg~D~~~y~G~l~~~pv~~----~~~w~V~l~-I~Vgg~-~ 329 (453)
T 2bju_A 256 SIGSVDPIVVELKNQNKIENALFTFYLPVHDKHTGFLTIGGIEERFYEGPLTYEKLNH----DLYWQITLD-AHVGNI-M 329 (453)
T ss_dssp STTCCCCHHHHHHHTTSSSSCEEEEECCBTTTBCEEEEESSCCGGGEEEEEEEEEEEE----ETTEEEEEE-EEETTE-E
T ss_pred cccCCCcHHHHHHHCCCCCCCEEEEEeCCCCCCCeEEEECCCCHHHcCCceEEEecCC----CceEEEEEE-EEECcE-E
Confidence 4 455665542 6999999998655689999999995 6899999987 679999999 999994 3
Q ss_pred eeccccCCCCCEEEecCCcceecChhHHHHHHHHHHHHHhcCCCCCCccccccceeccCCccccCCeEEEEEcCCcEEEe
Q 017894 228 PIATTVFSTPGTIIDSGTVITRLPPHAYTVLKTAFRQLMSKYPTAPAVSILDTCYDFSEHETITIPKISFFFNGGVEVDV 307 (364)
Q Consensus 228 ~~~~~~~~~~~aiiDtgt~~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~P~i~~~~~g~~~~~i 307 (364)
. .. ..++|||||++++||.+++++|.+++++. +...+ ..|.++|.. ..+|+|+|+| +|.+++|
T Consensus 330 -~--~~---~~aIiDSGTsl~~lP~~~~~~l~~~i~~~----~~~~g-----~~~~v~C~~-~~~P~itf~f-gg~~~~l 392 (453)
T 2bju_A 330 -L--EK---ANCIVDSGTSAITVPTDFLNKMLQNLDVI----KVPFL-----PFYVTLCNN-SKLPTFEFTS-ENGKYTL 392 (453)
T ss_dssp -E--EE---EEEEECTTCCSEEECHHHHHHHTTTSSCE----ECTTS-----SCEEEETTC-TTCCCEEEEC-SSCEEEE
T ss_pred -e--cc---ccEEEcCCCCeEecCHHHHHHHHHHhCCc----ccCCC-----ceEEEecCC-CCCCcEEEEE-CCEEEEE
Confidence 2 11 35999999999999999999999888653 11111 136777876 6899999999 7899999
Q ss_pred CCCceEEEcC--CCeEEE-EEEcCCCCCCeeEecccceeeeEEEEECCCCEEEEEeCC
Q 017894 308 DVTGIMFPIR--ASQVCL-AFAGNSDPSDVGIFGNVQQHTLEVVYDVAHGQVGFAAGG 362 (364)
Q Consensus 308 ~~~~~~~~~~--~~~~C~-~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~rigfa~~~ 362 (364)
++++|+++.. +...|+ +|...+...+.||||.+|||++|+|||++++|||||+++
T Consensus 393 ~~~~yi~~~~~~g~~~C~~~~~~~~~~~~~~ILGd~Flr~~yvVFD~~n~rIGfA~~~ 450 (453)
T 2bju_A 393 EPEYYLQHIEDVGPGLCMLNIIGLDFPVPTFILGDPFMRKYFTVFDYDNHSVGIALAK 450 (453)
T ss_dssp CHHHHEEECTTTSTTEEEECEEECCCSSCEEEECHHHHHHEEEEEETTTTEEEEEEEC
T ss_pred CHHHhEeecccCCCceEEEEEEeCCCCCCCEEECHHHhhcEEEEEECCCCEEEEEEcc
Confidence 9999999864 346998 677765334689999999999999999999999999975
No 24
>1yg9_A Aspartic protease BLA G 2; allegren, hydrolase, allergen; HET: NAG; 1.30A {Blattella germanica} PDB: 2nr6_A* 3liz_A*
Probab=100.00 E-value=1e-54 Score=403.26 Aligned_cols=304 Identities=15% Similarity=0.213 Sum_probs=253.6
Q ss_pred CcccccccCCccCCccEEEEEEeCCCCcEEEEEEEcCCcceeEeCCCcc-cCcCCCCCCCCCCCCCCcccccCCCCCccC
Q 017894 6 AATLPAIHGSVVGSGNYIVTVGIGTPKRKFSLIFDTGSDLTWTQCKPCV-GFCYQQKEKIFDPKRSKSYRNVSCSSTVCS 84 (364)
Q Consensus 6 ~~~~p~~~~~~~~~~~y~~~i~iGtP~q~~~~~~DTgS~~~wv~~~~c~-~~c~~~~~~~y~~s~Sst~~~~~~~~~~c~ 84 (364)
.+..||+ ++.+..|+++|.|| +|+++|+|||||+++||++..|. ..|....+..|+|++| ||+..
T Consensus 6 ~~~~~l~---n~~~~~Y~~~i~iG--~Q~~~v~~DTGSs~lWv~~~~C~~~~C~~~~~~~y~~~~S-T~~~~-------- 71 (330)
T 1yg9_A 6 PLYKLVH---VFINTQYAGITKIG--NQNFLTVFDSTSCNVVVASQECVGGACVCPNLQKYEKLKP-KYISD-------- 71 (330)
T ss_dssp CSCSCEE---EEECTTSEEEEEET--TEEEEEEEETTCCCEEEECTTCCSGGGGSTTCCCCCCSSC-EEEEE--------
T ss_pred eeEeeee---cCCCCEEEEEEEEC--CEEEEEEEeCCCcceEEecCCCCCccCcccccCccCCCCC-ceEEC--------
Confidence 4556666 67788999999999 89999999999999999999995 4683333489999999 99885
Q ss_pred CcccCCCCCCCCCCCCcceeeEEeCCCCceEEEEEEEEEEecCCCccCCeEEeeccCCCCCC--CCcCeEEecCCCCCh-
Q 017894 85 SLESATGNIPGCASNKTCVYGIQYGDSSFSVGFFAKETLTLTSKDVFPKFLLGCGQNNRGLF--RGAAGLLGLGRNKIS- 161 (364)
Q Consensus 85 ~~~~~~~~~~~c~~~~~~~~~~~y~~g~~~~G~~~~D~v~i~~~~~~~~~~fg~a~~~~~~~--~~~~GilGLg~~~~s- 161 (364)
.+.|.+.|++|+ +.|.+++|+|+|++ ..++++.||++......| ..++||||||++.++
T Consensus 72 ----------------~~~~~i~Yg~Gs-~~G~~~~Dtv~ig~-~~~~~~~fg~~~~~~~~f~~~~~~GilGLg~~~~s~ 133 (330)
T 1yg9_A 72 ----------------GNVQVKFFDTGS-AVGRGIEDSLTISQ-LTTSQQDIVLADELSQEVCILSADVVVGIAAPGCPN 133 (330)
T ss_dssp ----------------EEEEEEETTTEE-EEEEEEEEEEEETT-EEEEEEEEEEEEEECTHHHHTTCSEEEECSCTTSCC
T ss_pred ----------------CCEEEEEECCce-EEEEEEEEEEEECC-EEEcCeEEEEEEEcccccccccCceEEEcCcchhcc
Confidence 578999999997 69999999999999 699999999999874323 368999999998776
Q ss_pred ------hHHHhhhhc--CCcEEEeCCCCCC--CceeEEeCCCCC----CCceEeecccCCCCCcceEEEeeEEEECCEEe
Q 017894 162 ------LVYQTASKY--KKRFSYCLPSSSS--STGHLTFGPGIK----KSVKFTPLSSAFQGSSFYGLDMTGISVGGEKL 227 (364)
Q Consensus 162 ------~~~q~~~~~--~~~fsl~l~~~~~--~~g~l~fGg~d~----~~l~~~p~~~~~~~~~~w~v~l~~i~v~~~~~ 227 (364)
+++|+..+. +++||+||.+... ..|.|+|||+|+ +++.|+|+.. ..+|+|.+++|+|+++.+
T Consensus 134 ~~~~~~~~~~l~~qg~i~~~FS~~l~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~----~~~w~v~l~~i~v~~~~~ 209 (330)
T 1yg9_A 134 ALKGKTVLENFVEENLIAPVFSIHHARFQDGEHFGEIIFGGSDWKYVDGEFTYVPLVG----DDSWKFRLDGVKIGDTTV 209 (330)
T ss_dssp TTSCCCHHHHHHHTTSSCSEEEEEEEECTTSCEEEEEEETSCCGGGEEEEEEEEEBSC----TTSCCEECSEEEETTEEE
T ss_pred ccCCCCHHHHHHhcCCCCceEEEEEcCCCCCCCCCEEEECCcCHHHccCceEEEECCC----CCEEEEEeCeEEECCEEE
Confidence 666665542 7999999987633 289999999995 6899999986 689999999999999886
Q ss_pred eeccccCCCCCEEEecCCcceecChhHHHHHHHHHHHHHhcCCCCCCccccccce-eccCCccccCCeEEEEEcCCcEEE
Q 017894 228 PIATTVFSTPGTIIDSGTVITRLPPHAYTVLKTAFRQLMSKYPTAPAVSILDTCY-DFSEHETITIPKISFFFNGGVEVD 306 (364)
Q Consensus 228 ~~~~~~~~~~~aiiDtgt~~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~c~-~~~~~~~~~~P~i~~~~~g~~~~~ 306 (364)
. .. . ..+||||||++++||++++++|++++++.. .. .+ ...| .++|.....+|+|+|.| +|.+++
T Consensus 210 ~-~~-~---~~aiiDSGTs~~~lP~~~~~~l~~~~~~~~---~~-~g----~~~~~~~~C~~~~~~p~i~f~f-gg~~~~ 275 (330)
T 1yg9_A 210 A-PA-G---TQAIIDTSKAIIVGPKAYVNPINEAIGCVV---EK-TT----TRRICKLDCSKIPSLPDVTFVI-NGRNFN 275 (330)
T ss_dssp E-CT-T---CEEEECTTCSSEEEEHHHHHHHHHHHTCEE---EE-CS----SCEEEEECGGGGGGSCCEEEEE-TTEEEE
T ss_pred c-CC-C---cEEEEecCCccccCCHHHHHHHHHHhCCcc---cC-CC----ceEEEEEECCCccccCcEEEEE-CCEEEE
Confidence 5 11 1 459999999999999999999999986652 11 11 0135 77888777899999999 899999
Q ss_pred eCCCceEEEcCCCeEEE-EEEcCCCCCCeeEecccceeeeEEEEECCCCEEEEEeCC
Q 017894 307 VDVTGIMFPIRASQVCL-AFAGNSDPSDVGIFGNVQQHTLEVVYDVAHGQVGFAAGG 362 (364)
Q Consensus 307 i~~~~~~~~~~~~~~C~-~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~rigfa~~~ 362 (364)
|++++|+++. +..|+ +|... ...+.||||.+|||++|+|||++++|||||+++
T Consensus 276 l~~~~y~~~~--~~~C~~~i~~~-~~~~~~ilG~~fl~~~y~vfD~~~~riGfA~~~ 329 (330)
T 1yg9_A 276 ISSQYYIQQN--GNLCYSGFQPC-GHSDHFFIGDFFVDHYYSEFNWENKTMGFGRSV 329 (330)
T ss_dssp ECHHHHEEEE--TTEEEESEEEE-TTCSSEEECHHHHTTEEEEEETTTTEEEEEEEC
T ss_pred ECHHHhcccC--CCcEEEEEEeC-CCCCeEEecHHHhhheEEEEECCCCEEEEEECC
Confidence 9999999987 57898 56654 234579999999999999999999999999974
No 25
>1t6e_X Xylanase inhibitor; two beta-barrel domain structure, hydrolase inhibitor; 1.70A {Triticum aestivum} SCOP: b.50.1.2 PDB: 1t6g_A 2b42_A 3hd8_A
Probab=100.00 E-value=2.7e-53 Score=401.16 Aligned_cols=328 Identities=23% Similarity=0.455 Sum_probs=256.8
Q ss_pred CcccccccCCccCCccEEEEEEeCCCCcEEEEEEEcCCcceeEeCCCcccCcCCCCCCCCCCCCCCcccccCCCCCccCC
Q 017894 6 AATLPAIHGSVVGSGNYIVTVGIGTPKRKFSLIFDTGSDLTWTQCKPCVGFCYQQKEKIFDPKRSKSYRNVSCSSTVCSS 85 (364)
Q Consensus 6 ~~~~p~~~~~~~~~~~y~~~i~iGtP~q~~~~~~DTgS~~~wv~~~~c~~~c~~~~~~~y~~s~Sst~~~~~~~~~~c~~ 85 (364)
++-+||+. +..+.+|+++|.|||| |+|||||+++||+|..|. +++.++|.++.|..
T Consensus 2 ~~~~pv~~--~~~~~~Y~~~i~iGtP-----v~~DTGSs~lWv~c~~~~-----------------~~~~~~C~s~~C~~ 57 (381)
T 1t6e_X 2 PVLAPVTK--DPATSLYTIPFHDGAS-----LVLDVAGPLVWSTCDGGQ-----------------PPAEIPCSSPTCLL 57 (381)
T ss_dssp CEEEEEEE--CTTTCCEEEEEETTEE-----EEEETTCCCEEECCCTTC-----------------CCCCCBTTSHHHHH
T ss_pred ceEEeEEe--cCCCcEEEEEEeCCCE-----EEEECCCCceEEeCCCCC-----------------CCCccCCCCchhcc
Confidence 35578873 7788999999999998 999999999999987541 24456666666655
Q ss_pred cccCCCCCCCCCC--------CCcc-eeeEEeCCCCceEEEEEEEEEEecC---CCccCCe----EEeeccCC--CCCCC
Q 017894 86 LESATGNIPGCAS--------NKTC-VYGIQYGDSSFSVGFFAKETLTLTS---KDVFPKF----LLGCGQNN--RGLFR 147 (364)
Q Consensus 86 ~~~~~~~~~~c~~--------~~~~-~~~~~y~~g~~~~G~~~~D~v~i~~---~~~~~~~----~fg~a~~~--~~~~~ 147 (364)
.+.++. +.|.. ++.| .|.+.|++|+.+.|.+++|+|+|++ ...++++ .|||+... .+.+.
T Consensus 58 ~~~~~~--~sc~~~~~~~~~~~~~c~~f~i~YgdGs~~~G~l~~Dtv~ig~~~g~~~v~~~~~~~~Fg~~~~~~~~~~~~ 135 (381)
T 1t6e_X 58 ANAYPA--PGCPAPSCGSDKHDKPCTAYPYNPVSGACAAGSLSHTRFVANTTDGSKPVSKVNVGVLAACAPSKLLASLPR 135 (381)
T ss_dssp HHSSCC--TTCCCCCC------CBCEECCBCTTTCCBCCEEEEEEEEEEEEESSSSEEEEEEEEEEEEECCGGGGTTSCT
T ss_pred ccCCCC--CCCCCccCCcCcCCCccccccccccCCceeeEEEEEEEEEeeccCCCccccceeeeeEeecCcccccCCCCC
Confidence 444321 13431 2356 5999999998679999999999984 1355555 56999876 44456
Q ss_pred CcCeEEecCCCCChhHHHhhhh--cCCcEEEeCCCCCCCceeEEeCCCCC------CCceEeecccCCCCCcceEEEeeE
Q 017894 148 GAAGLLGLGRNKISLVYQTASK--YKKRFSYCLPSSSSSTGHLTFGPGIK------KSVKFTPLSSAFQGSSFYGLDMTG 219 (364)
Q Consensus 148 ~~~GilGLg~~~~s~~~q~~~~--~~~~fsl~l~~~~~~~g~l~fGg~d~------~~l~~~p~~~~~~~~~~w~v~l~~ 219 (364)
.++||||||+++++++.|+..+ .+++||+||.+. ..|.|+||+.+. +++.|+|+..++. ..+|.|.|++
T Consensus 136 ~~dGIlGLg~~~~s~~~ql~~~~~~~~~FS~~L~~~--~~G~l~fGg~~~~~~~~~g~l~~tPl~~~~~-~~~y~v~l~~ 212 (381)
T 1t6e_X 136 GSTGVAGLANSGLALPAQVASAQKVANRFLLCLPTG--GPGVAIFGGGPVPWPQFTQSMPYTPLVTKGG-SPAHYISARS 212 (381)
T ss_dssp TEEEEEECSSSTTSHHHHHHHHHTCCSEEEEECCSS--SCEEEEESCCSCSCHHHHTTCCEEECBCCTT-CCSCEECEEE
T ss_pred CCceEEEeCCCcchhHHHHhhhcccCceEEEEeCCC--CCeeEEeCCcccccccccCcceeeccccCCC-CcceEEEEEE
Confidence 8999999999999999998765 279999999875 589999999873 6899999988543 2457799999
Q ss_pred EEECCEEeeeccccCCCCCEEEecCCcceecChhHHHHHHHHHHHHHh-------cCCCC-CCccccccceeccCCcc--
Q 017894 220 ISVGGEKLPIATTVFSTPGTIIDSGTVITRLPPHAYTVLKTAFRQLMS-------KYPTA-PAVSILDTCYDFSEHET-- 289 (364)
Q Consensus 220 i~v~~~~~~~~~~~~~~~~aiiDtgt~~~~lp~~~~~~l~~~l~~~~~-------~~~~~-~~~~~~~~c~~~~~~~~-- 289 (364)
|+|+++.+.++...+..+.+||||||++++||++++++|.+++.+.+. .+++. .....+..|+..++...
T Consensus 213 i~vg~~~~~~~~~~~~~~~~iiDTGTtl~~lp~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~C~~~~~~~~~~ 292 (381)
T 1t6e_X 213 IVVGDTRVPVPEGALATGGVMLSTRLPYVLLRPDVYRPLMDAFTKALAAQHANGAPVARAVEAVAPFGVCYDTKTLGNNL 292 (381)
T ss_dssp EEETTEECCCCTTCSCTTCEEECSSCSSEEECHHHHHHHHHHHHHHHHHC-------CCEECCCTTCSCEEEGGGCCEET
T ss_pred EEEcCEEecCCHHHccCCCEEEECCCccEEeCHHHHHHHHHHHHHhhcccccccccccccCCCCCCCCccCCCCCCcccc
Confidence 999999987766555446799999999999999999999999998764 23232 22234567998776432
Q ss_pred --ccCCeEEEEEcCCcEEEeCCCceEEEcCCCeEEEEEEcCCC------CCCeeEecccceeeeEEEEECCCCEEEEEeC
Q 017894 290 --ITIPKISFFFNGGVEVDVDVTGIMFPIRASQVCLAFAGNSD------PSDVGIFGNVQQHTLEVVYDVAHGQVGFAAG 361 (364)
Q Consensus 290 --~~~P~i~~~~~g~~~~~i~~~~~~~~~~~~~~C~~~~~~~~------~~~~~ilG~~fl~~~y~vfD~~~~rigfa~~ 361 (364)
..+|+|+|+|.|+++++|++++|+++...+..|++|+..+. ..+.||||..|||++|+|||++++|||||++
T Consensus 293 ~~~~~P~i~f~f~gg~~~~l~~~~y~~~~~~~~~Cl~~~~~~~~~~~~~~~~~~ILGd~fl~~~yvvfD~~~~riGfA~~ 372 (381)
T 1t6e_X 293 GGYAVPNVQLGLDGGSDWTMTGKNSMVDVKQGTACVAFVEMKGVAAGDGRAPAVILGGAQMEDFVLDFDMEKKRLGFSRL 372 (381)
T ss_dssp TEECCCCEEEEETTSCEEEECHHHHEEEEETTEEEESEEECCCCC------CSEEECHHHHTTEEEEEETTTTEEEEEEC
T ss_pred cCCcCCeEEEEECCCcEEEeCCCeEEEEcCCCeEEEEEEcCCCcccccCCCceEEEChHHhCCcEEEEECCCCEEEEecc
Confidence 47999999996579999999999998655789998887643 1357999999999999999999999999986
Q ss_pred C
Q 017894 362 G 362 (364)
Q Consensus 362 ~ 362 (364)
.
T Consensus 373 ~ 373 (381)
T 1t6e_X 373 P 373 (381)
T ss_dssp C
T ss_pred c
Confidence 5
No 26
>2ewy_A Beta-secretase 2; BACE2, aspartic protease, hydrolase; HET: DBO; 3.10A {Homo sapiens}
Probab=100.00 E-value=3.2e-53 Score=401.50 Aligned_cols=311 Identities=23% Similarity=0.373 Sum_probs=242.0
Q ss_pred ccCCccEEEEEEeCCCCcEEEEEEEcCCcceeEeCCCcccCcCCCCCCCCCCCCCCcccccCCCCCccCCcccCCCCCCC
Q 017894 16 VVGSGNYIVTVGIGTPKRKFSLIFDTGSDLTWTQCKPCVGFCYQQKEKIFDPKRSKSYRNVSCSSTVCSSLESATGNIPG 95 (364)
Q Consensus 16 ~~~~~~y~~~i~iGtP~q~~~~~~DTgS~~~wv~~~~c~~~c~~~~~~~y~~s~Sst~~~~~~~~~~c~~~~~~~~~~~~ 95 (364)
+..+..|+++|.||||+|++.|+|||||+++||++..|.. | +..|+|++|+||+..
T Consensus 9 ~~~~~~Y~~~i~iGTP~q~~~v~~DTGSs~lWv~~~~c~~-~----~~~f~~~~SsT~~~~------------------- 64 (383)
T 2ewy_A 9 GDSGRGYYLEMLIGTPPQKLQILVDTGSSNFAVAGTPHSY-I----DTYFDTERSSTYRSK------------------- 64 (383)
T ss_dssp EETTTEEEEEEEETTTTEEEEEEEETTCCCEEEECSCBTT-B----SCCCCGGGCTTCEEE-------------------
T ss_pred CCCCCcEEEEEEecCCCceEEEEEecCCCceEEecCCCCc-c----ccCcccccCccceeC-------------------
Confidence 4456789999999999999999999999999999998832 4 378999999999997
Q ss_pred CCCCCcceeeEEeCCCCceEEEEEEEEEEecCCCccC-CeEEeeccCCCCCC---CCcCeEEecCCCCCh----------
Q 017894 96 CASNKTCVYGIQYGDSSFSVGFFAKETLTLTSKDVFP-KFLLGCGQNNRGLF---RGAAGLLGLGRNKIS---------- 161 (364)
Q Consensus 96 c~~~~~~~~~~~y~~g~~~~G~~~~D~v~i~~~~~~~-~~~fg~a~~~~~~~---~~~~GilGLg~~~~s---------- 161 (364)
.|.|.+.|++|+ +.|.+++|+|+|++..... .+.|++..+..+.+ ..++||||||++.++
T Consensus 65 -----~~~~~i~Yg~Gs-~~G~~~~Dtv~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~ 138 (383)
T 2ewy_A 65 -----GFDVTVKYTQGS-WTGFVGEDLVTIPKGFNTSFLVNIATIFESENFFLPGIKWNGILGLAYATLAKPSSSLETFF 138 (383)
T ss_dssp -----EEEEEEECSSCE-EEEEEEEEEEEETTTEEEEEEEEEEEEEEEESCSCTTCCCCEEEECSCGGGCSSCTTSCCHH
T ss_pred -----CceEEEEECCcE-EEEEEEEEEEEECCCccceeEEEEEEEEeecceeeccCcCceEEecCchhcccccccccCHH
Confidence 578999999997 7999999999998731222 35677765544433 367999999997653
Q ss_pred --hHHHhhhhcCCcEEEeCCCC-------CCCceeEEeCCCCC----CCceEeecccCCCCCcceEEEeeEEEECCEEee
Q 017894 162 --LVYQTASKYKKRFSYCLPSS-------SSSTGHLTFGPGIK----KSVKFTPLSSAFQGSSFYGLDMTGISVGGEKLP 228 (364)
Q Consensus 162 --~~~q~~~~~~~~fsl~l~~~-------~~~~g~l~fGg~d~----~~l~~~p~~~~~~~~~~w~v~l~~i~v~~~~~~ 228 (364)
+++|... +++||+||.+. ....|.|+|||+|+ +++.|+|+.. ..+|+|.+++|+|+++.+.
T Consensus 139 ~~l~~q~~i--~~~FS~~l~~~~~~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~----~~~~~v~l~~i~v~g~~~~ 212 (383)
T 2ewy_A 139 DSLVTQANI--PNVFSMQMCGAGLPVAGSGTNGGSLVLGGIEPSLYKGDIWYTPIKE----EWYYQIEILKLEIGGQSLN 212 (383)
T ss_dssp HHHHHHHTC--CSCEEEEECCC---------CCEEEEETSCCGGGCCSCEEEEECSS----BTTBBCCEEEEEETTEECC
T ss_pred HHHHHccCC--CcceEEEeeccccccccCCCCCeEEEeCccchhhccCccEEEecCC----CceEEEEEEEEEECCEEcc
Confidence 3444433 58999998641 23589999999984 7999999987 6799999999999999987
Q ss_pred eccccCCCCCEEEecCCcceecChhHHHHHHHHHHHHHhcCCCCCCc---cccccceeccCCccccCCeEEEEEcCC---
Q 017894 229 IATTVFSTPGTIIDSGTVITRLPPHAYTVLKTAFRQLMSKYPTAPAV---SILDTCYDFSEHETITIPKISFFFNGG--- 302 (364)
Q Consensus 229 ~~~~~~~~~~aiiDtgt~~~~lp~~~~~~l~~~l~~~~~~~~~~~~~---~~~~~c~~~~~~~~~~~P~i~~~~~g~--- 302 (364)
++...+....+||||||++++||.+++++|++++.+.... ...... .....|+..+......+|+|+|+|.++
T Consensus 213 ~~~~~~~~~~aiiDSGTt~~~lP~~~~~~l~~~i~~~~~~-~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~g~~~~ 291 (383)
T 2ewy_A 213 LDCREYNADKAIVDSGTTLLRLPQKVFDAVVEAVARASLI-PEFSDGFWTGSQLACWTNSETPWSYFPKISIYLRDENSS 291 (383)
T ss_dssp CCTTTTTSSCEEECTTCSSEEEEHHHHHHHHHHHHHTTCS-SCCCHHHHHTSEEEEECSSSCGGGGSCCEEEEEECSSTT
T ss_pred ccccccCCccEEEEcCCccccCCHHHHHHHHHHHhhhccc-ccCccccccccccccccCCcccHhhCCcEEEEECCCCCC
Confidence 6554443357999999999999999999999999987321 111111 113357655443445799999999543
Q ss_pred --cEEEeCCCceEEEcC---CCeEEEEEEcCCCCCCeeEecccceeeeEEEEECCCCEEEEEeCCCC
Q 017894 303 --VEVDVDVTGIMFPIR---ASQVCLAFAGNSDPSDVGIFGNVQQHTLEVVYDVAHGQVGFAAGGCS 364 (364)
Q Consensus 303 --~~~~i~~~~~~~~~~---~~~~C~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~rigfa~~~c~ 364 (364)
.+++|++++|+.+.. .+..|+.+.-.. ..+.||||..|||++|+|||++++|||||+++|+
T Consensus 292 ~~~~~~l~~~~yi~~~~~~~~~~~C~~~~i~~-~~~~~ILG~~fl~~~yvvfD~~~~rIGfA~~~c~ 357 (383)
T 2ewy_A 292 RSFRITILPQLYIQPMMGAGLNYECYRFGISP-STNALVIGATVMEGFYVIFDRAQKRVGFAASPCA 357 (383)
T ss_dssp EEEEEEECHHHHEEEECCCTTCSEEEEESEEE-ESSCEEECHHHHTTEEEEEETTTTEEEEEECTTC
T ss_pred ceEEEEEChHHheeecccCCCCceeEEEEecC-CCCcEEEChHHhCCeeEEEECCCCeEEEEeccCC
Confidence 379999999998853 356898532111 2346999999999999999999999999999995
No 27
>3vf3_A Beta-secretase 1; structure-based drug design, hydrolase-hydrolase inhibitor C; HET: 0GS; 1.48A {Homo sapiens} PDB: 2f3e_A* 2f3f_A* 1ym2_A* 3dv1_A* 3dv5_A* 3k5c_A* 3k5f_A* 3k5g_A* 3pi5_A* 3qbh_A* 3duy_A* 3veu_A* 3vg1_A* 4d83_A* 4d88_A* 4d89_A* 4d8c_A* 3msk_A* 3k5d_A* 1ym4_A* ...
Probab=100.00 E-value=3.9e-53 Score=403.27 Aligned_cols=311 Identities=20% Similarity=0.347 Sum_probs=243.5
Q ss_pred CCccEEEEEEeCCCCcEEEEEEEcCCcceeEeCCCcccCcCCCCCCCCCCCCCCcccccCCCCCccCCcccCCCCCCCCC
Q 017894 18 GSGNYIVTVGIGTPKRKFSLIFDTGSDLTWTQCKPCVGFCYQQKEKIFDPKRSKSYRNVSCSSTVCSSLESATGNIPGCA 97 (364)
Q Consensus 18 ~~~~y~~~i~iGtP~q~~~~~~DTgS~~~wv~~~~c~~~c~~~~~~~y~~s~Sst~~~~~~~~~~c~~~~~~~~~~~~c~ 97 (364)
....|+++|.||||+|+++|+|||||+++||++..| |..+ ..|+|++|+||+..
T Consensus 26 ~~~~Y~~~i~iGTP~q~~~v~~DTGSs~lWv~~~~c---~~~~--~~y~~~~SsT~~~~--------------------- 79 (402)
T 3vf3_A 26 SGQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAPH---PFLH--RYYQRQLSSTYRDL--------------------- 79 (402)
T ss_dssp TTTEEEEEEEETTTTEEEEEEEETTCCCEEEECSCC---TTCS--CCCCGGGCTTCEEE---------------------
T ss_pred CCCEEEEEEEECCCCeEEEEEEeCCCCceEEccCCC---Cccc--CCcCcccCcccccC---------------------
Confidence 446799999999999999999999999999999988 6544 89999999999997
Q ss_pred CCCcceeeEEeCCCCceEEEEEEEEEEecCCCccCC-eEEeeccCCCCCC---CCcCeEEecCCCCC--------hhHHH
Q 017894 98 SNKTCVYGIQYGDSSFSVGFFAKETLTLTSKDVFPK-FLLGCGQNNRGLF---RGAAGLLGLGRNKI--------SLVYQ 165 (364)
Q Consensus 98 ~~~~~~~~~~y~~g~~~~G~~~~D~v~i~~~~~~~~-~~fg~a~~~~~~~---~~~~GilGLg~~~~--------s~~~q 165 (364)
.+.|.+.|++|+ +.|.+++|+|+|++...+.. +.|+++......+ ..++||||||++.+ +++++
T Consensus 80 ---~~~~~i~Yg~Gs-~~G~~~~D~v~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~~~~~~~~ 155 (402)
T 3vf3_A 80 ---RKGVYVPYTQGK-WEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDS 155 (402)
T ss_dssp ---EEEEEEECSSCE-EEEEEEEEEEECTTSCSCEEEEEEEEEEEEESCSCTTCCCCEEEECSCGGGCSSCTTSCCHHHH
T ss_pred ---CCEEEEEECcEE-EEEEEEEEEEEECCccccceeeeEEEEEccccccccCCCccceEEcCchhhcccCCcCCcHHHH
Confidence 579999999998 79999999999995234443 3467766554433 36899999998754 35556
Q ss_pred hhhhc--CCcEEEeCCCC----------CCCceeEEeCCCCC----CCceEeecccCCCCCcceEEEeeEEEECCEEeee
Q 017894 166 TASKY--KKRFSYCLPSS----------SSSTGHLTFGPGIK----KSVKFTPLSSAFQGSSFYGLDMTGISVGGEKLPI 229 (364)
Q Consensus 166 ~~~~~--~~~fsl~l~~~----------~~~~g~l~fGg~d~----~~l~~~p~~~~~~~~~~w~v~l~~i~v~~~~~~~ 229 (364)
+..+. +++||+||.+. ....|.|+|||+|+ +++.|+|+.. ..+|.|.+++|+|+++.+.+
T Consensus 156 L~~q~~i~~~FS~~l~~~~~~~~~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~----~~~w~v~l~~i~v~g~~~~~ 231 (402)
T 3vf3_A 156 LVKQTHVPNLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGSLWYTPIRR----EWYYEVIIVRVEINGQDLKM 231 (402)
T ss_dssp HHHHSCCCSCEEEEECCCC-------------EEEEESSCCGGGEEEEEEEEECSS----BTTBEECEEEEEETTEECCC
T ss_pred HHHccCCccceEEEeecccccccccccccCCCCEEEeCCcCcccccCceEEEeCCc----CcEEEEEEeEEEECCEEecc
Confidence 66553 47999999642 23489999999995 6999999987 67999999999999999876
Q ss_pred ccccCCCCCEEEecCCcceecChhHHHHHHHHHHHHHhcCCCCCCcc---ccccceeccCCccccCCeEEEEEcCCc---
Q 017894 230 ATTVFSTPGTIIDSGTVITRLPPHAYTVLKTAFRQLMSKYPTAPAVS---ILDTCYDFSEHETITIPKISFFFNGGV--- 303 (364)
Q Consensus 230 ~~~~~~~~~aiiDtgt~~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~---~~~~c~~~~~~~~~~~P~i~~~~~g~~--- 303 (364)
+...+....++|||||++++||.+++++|++++.+.... ....... ....|+.........+|+|+|+|.+..
T Consensus 232 ~~~~~~~~~aiiDSGTt~~~lP~~~~~~i~~~i~~~~~~-~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~g~~~~~ 310 (402)
T 3vf3_A 232 DCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASST-EKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQ 310 (402)
T ss_dssp CGGGGGSSCEEECTTCCSEEEEHHHHHHHHHHHHHHTTT-SCCCTTGGGTCSCEEEETTCCCGGGSCCEEEEEECSSTTE
T ss_pred cccccCCCeEEEECCCCcccCCHHHHHHHHHHHhhhccc-cccCccccccccccccccccchHhhCCceEEEEecCCCCc
Confidence 544333356999999999999999999999999998431 1111111 134576554444457999999995432
Q ss_pred --EEEeCCCceEEEcCCC----eEEEEEEcCCCCCCeeEecccceeeeEEEEECCCCEEEEEeCCCC
Q 017894 304 --EVDVDVTGIMFPIRAS----QVCLAFAGNSDPSDVGIFGNVQQHTLEVVYDVAHGQVGFAAGGCS 364 (364)
Q Consensus 304 --~~~i~~~~~~~~~~~~----~~C~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~rigfa~~~c~ 364 (364)
+++|++++|+++.... ..|+++... ...+.||||.+|||++|+|||++++|||||+++|+
T Consensus 311 ~~~~~l~~~~yi~~~~~~~~~~~~C~~~~~~-~~~~~~ILG~~fl~~~yvvfD~~~~rIGfA~~~c~ 376 (402)
T 3vf3_A 311 SFRITILPQQYLRPVEDVATSQDDCYKFAIS-QSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSACH 376 (402)
T ss_dssp EEEEEECHHHHEEECCCGGGTTEEEEEECEE-EESSCEEECHHHHTTEEEEEEGGGTEEEEEEETTC
T ss_pred eEEEEECHHHheehhccCCCCCceEEEEecc-CCCCcEEEChHHhCCeEEEEECCCCEEEEEecccC
Confidence 6999999999985432 589863222 12356999999999999999999999999999996
No 28
>1wkr_A Polyporopepsin; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.30A {Irpex lacteus} SCOP: b.50.1.2
Probab=100.00 E-value=4.1e-53 Score=394.39 Aligned_cols=297 Identities=24% Similarity=0.415 Sum_probs=243.0
Q ss_pred cccccccCCccCCccEEEEEEeCCCCcEEEEEEEcCCcceeEeCCCcccCcCCCCCCCCCCCCCCcccccCCCCCccCCc
Q 017894 7 ATLPAIHGSVVGSGNYIVTVGIGTPKRKFSLIFDTGSDLTWTQCKPCVGFCYQQKEKIFDPKRSKSYRNVSCSSTVCSSL 86 (364)
Q Consensus 7 ~~~p~~~~~~~~~~~y~~~i~iGtP~q~~~~~~DTgS~~~wv~~~~c~~~c~~~~~~~y~~s~Sst~~~~~~~~~~c~~~ 86 (364)
.++||+. . +..|+++|.||||+|++.|+|||||+++||+|. ..|+|++|+++.
T Consensus 3 ~~~~l~n---~-~~~Y~~~i~iGTP~q~~~v~~DTGSs~lWv~~~-----------~~y~~s~Ss~~~------------ 55 (340)
T 1wkr_A 3 GSVPATN---Q-LVDYVVNVGVGSPATTYSLLVDTGSSNTWLGAD-----------KSYVKTSTSSAT------------ 55 (340)
T ss_dssp EEEEEEE---C-SSCEEEEEEETTTTEEEEEEEETTCCCCEECSS-----------SCCCCCTTCEEE------------
T ss_pred ccEeeec---c-CcEEEEEEEECCCCcEEEEEEeCCChhheecCC-----------CccCCcCCcccc------------
Confidence 4688873 3 468999999999999999999999999999753 579999888643
Q ss_pred ccCCCCCCCCCCCCcceeeEEeCCCCceEEEEEEEEEEecCCCccCCeEEeeccCCCCCCCCcCeEEecCCCCCh-----
Q 017894 87 ESATGNIPGCASNKTCVYGIQYGDSSFSVGFFAKETLTLTSKDVFPKFLLGCGQNNRGLFRGAAGLLGLGRNKIS----- 161 (364)
Q Consensus 87 ~~~~~~~~~c~~~~~~~~~~~y~~g~~~~G~~~~D~v~i~~~~~~~~~~fg~a~~~~~~~~~~~GilGLg~~~~s----- 161 (364)
.|.|.+.|++|+ +.|.+++|+|+|++ ..++++.||++....+ +..++||||||++.++
T Consensus 56 --------------~~~~~i~Yg~Gs-~~G~~~~Dtv~~g~-~~v~~~~fg~~~~~~~-~~~~~GilGLg~~~~s~~~~~ 118 (340)
T 1wkr_A 56 --------------SDKVSVTYGSGS-FSGTEYTDTVTLGS-LTIPKQSIGVASRDSG-FDGVDGILGVGPVDLTVGTLS 118 (340)
T ss_dssp --------------EEEEEEECSSCE-EEEEEEEEEEEETT-EEEEEEEEEEEEEEES-CTTCSEEEECSCGGGGTTSEE
T ss_pred --------------CceEEEEECCcE-EEEEEEEEEEEECC-EEEcceEEEEEEccCC-CcCCCcEEECCcccccccccc
Confidence 378999999997 89999999999999 7999999999998755 5578999999997654
Q ss_pred ---------hHHHhhhhc---CCcEEEeCCCC---CCCceeEEeCCCCC----CCceEeecccCCCCCcceEEEeeEEEE
Q 017894 162 ---------LVYQTASKY---KKRFSYCLPSS---SSSTGHLTFGPGIK----KSVKFTPLSSAFQGSSFYGLDMTGISV 222 (364)
Q Consensus 162 ---------~~~q~~~~~---~~~fsl~l~~~---~~~~g~l~fGg~d~----~~l~~~p~~~~~~~~~~w~v~l~~i~v 222 (364)
++.++..+. +++||+||.+. ....|.|+|||+|+ +++.|+|+...+....+|.|. .+|+|
T Consensus 119 ~~~~~~~~~~~~~l~~~g~i~~~~FS~~l~~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~~~~~~~~w~v~-~~i~v 197 (340)
T 1wkr_A 119 PHTSTSIPTVTDNLFSQGTIPTNLLAVSFEPTTSESSTNGELTFGATDSSKYTGSITYTPITSTSPASAYWGIN-QSIRY 197 (340)
T ss_dssp SCTTCCCCCHHHHHHHTTSSSSSEEEEECCCCSSSSEEEEEEEESSCCGGGCSSCCEEEECCSSTTGGGSSEEE-EEEEE
T ss_pred ccccccCCCHHHHHHHcCCCCCCEEEEEecCCCCCCCCCcEEEEcccChhhcccceEEEECccCCCCcceEEEE-eeEEE
Confidence 355555442 68999999864 23489999999984 799999998854335789999 99999
Q ss_pred CC-EEeeeccccCCCCCEEEecCCcceecChhHHHHHHHHHHHHHhcCCCCCCccccccceeccCCccccCCeEEEEEcC
Q 017894 223 GG-EKLPIATTVFSTPGTIIDSGTVITRLPPHAYTVLKTAFRQLMSKYPTAPAVSILDTCYDFSEHETITIPKISFFFNG 301 (364)
Q Consensus 223 ~~-~~~~~~~~~~~~~~aiiDtgt~~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~P~i~~~~~g 301 (364)
++ +.+..+ ..++|||||++++||.+++++|.+++++. +....+ +|.++|.....+|+|+|.| +
T Consensus 198 ~~~~~l~~~------~~aiiDSGTt~~~lP~~~~~~l~~~~~a~---~~~~~g------~~~~~C~~~~~~p~i~f~f-~ 261 (340)
T 1wkr_A 198 GSSTSILSS------TAGIVDTGTTLTLIASDAFAKYKKATGAV---ADNNTG------LLRLTTAQYANLQSLFFTI-G 261 (340)
T ss_dssp TTTEEEEEE------EEEEECTTBCSEEECHHHHHHHHHHHTCE---ECTTTS------SEEECHHHHHTCCCEEEEE-T
T ss_pred CCCeEccCC------CeEEEeCCcccccCCHHHHHHHHHhhCCE---EcCCCC------eEEeeccccccCCcEEEEE-C
Confidence 98 877532 24999999999999999999998888655 222111 4778887777899999999 7
Q ss_pred CcEEEeCCCceEEEcC-------CCeEEE-EEEcCCC---CCCeeEecccceeeeEEEEECCCCEEEEEeCCCC
Q 017894 302 GVEVDVDVTGIMFPIR-------ASQVCL-AFAGNSD---PSDVGIFGNVQQHTLEVVYDVAHGQVGFAAGGCS 364 (364)
Q Consensus 302 ~~~~~i~~~~~~~~~~-------~~~~C~-~~~~~~~---~~~~~ilG~~fl~~~y~vfD~~~~rigfa~~~c~ 364 (364)
+.+++|+|++|+++.. ....|+ .+..... ....||||.+|||++|+|||++++|||||+++|+
T Consensus 262 g~~~~i~~~~yi~~~~~~~~~g~~~~~c~~~~~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~~igfA~~~~~ 335 (340)
T 1wkr_A 262 GQTFELTANAQIWPRNLNTAIGGSASSVYLIVGDLGSDSGEGLDFINGLTFLERFYSVYDTTNKRLGLATTSFT 335 (340)
T ss_dssp TEEEEECTGGGBCCGGGGGGGTCCSSCEEBCEEECSSCTTSSCCEEECHHHHTSEEEEEETTTTEEEEEECTTT
T ss_pred CEEEEEcHHHhccccccccccCCCCceEEEEEecCCCCCCCCcceEeChHhhhheEEEEeCCCCeEEEEecCCC
Confidence 8999999999998742 235686 5655321 2346999999999999999999999999999985
No 29
>1ibq_A Aspergillopepsin; aspartic proteinase, hydrolase; HET: MAN; 2.14A {Aspergillus phoenicis} SCOP: b.50.1.2
Probab=100.00 E-value=1.3e-53 Score=395.11 Aligned_cols=303 Identities=22% Similarity=0.318 Sum_probs=245.5
Q ss_pred cccccccCCccCCccEEEEEEeCCCCcEEEEEEEcCCcceeEeCCCcccCcCCCCCCCCCCCCCCcccccCCCCCccCCc
Q 017894 7 ATLPAIHGSVVGSGNYIVTVGIGTPKRKFSLIFDTGSDLTWTQCKPCVGFCYQQKEKIFDPKRSKSYRNVSCSSTVCSSL 86 (364)
Q Consensus 7 ~~~p~~~~~~~~~~~y~~~i~iGtP~q~~~~~~DTgS~~~wv~~~~c~~~c~~~~~~~y~~s~Sst~~~~~~~~~~c~~~ 86 (364)
-++|+.. ..++.+|+++|.|| +|++.|+|||||+++||+|..|.. |..+.++.|+|++|+ ++..
T Consensus 3 ~~v~~~~--~~~~~~Y~~~i~iG--~Q~~~v~~DTGSs~lWv~~~~C~~-~~c~~~~~y~~~~Ss-~~~~---------- 66 (325)
T 1ibq_A 3 GSAVTTP--QNNDEEYLTPVTVG--KSTLHLDFDTGSADLWVFSDELPS-SEQTGHDLYTPSSSA-TKLS---------- 66 (325)
T ss_dssp EEEEEEE--CTTTSCEEEEEEEB--TEEEEEEEETTCCCEEEECTTSCH-HHHTTSCCCBCCSSC-EECT----------
T ss_pred ceEEeEE--cCCCCEEEEEEEEC--CEEEEEEEeCCCccceEeeCCCCc-cccCCCCCCCchhcC-CccC----------
Confidence 3556664 34788999999999 899999999999999999999943 443445899999999 4432
Q ss_pred ccCCCCCCCCCCCCcceeeEEeCCCCceEEEEEEEEEEecCCCccCCeEEeeccCCCCCC---CCcCeEEecCCCCCh--
Q 017894 87 ESATGNIPGCASNKTCVYGIQYGDSSFSVGFFAKETLTLTSKDVFPKFLLGCGQNNRGLF---RGAAGLLGLGRNKIS-- 161 (364)
Q Consensus 87 ~~~~~~~~~c~~~~~~~~~~~y~~g~~~~G~~~~D~v~i~~~~~~~~~~fg~a~~~~~~~---~~~~GilGLg~~~~s-- 161 (364)
.|.|.+.|++|+.+.|.+++|+|+|++ ..++++.||++....+.+ ..++||||||++.++
T Consensus 67 --------------~~~~~i~Yg~Gs~~~G~~~~D~v~ig~-~~v~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~ 131 (325)
T 1ibq_A 67 --------------GYSWDISYGDGSSASGDVYRDTVTVGG-VTTNKQAVEAASKISSEFVQDTANDGLLGLAFSSINTV 131 (325)
T ss_dssp --------------TCBEEEECSSSCEEEEEEEEEEEEETT-EEEEEEEEEEEEEECHHHHTSTTCCEEEECSCGGGCCC
T ss_pred --------------CCEEEEEeCCCCEEEEEEEEeEEEECC-EEEcceEEEEEEecCccccccCCCceEEEeCccccccc
Confidence 579999999998789999999999999 699999999999875422 368999999997654
Q ss_pred -------hHHHhhhhc-CCcEEEeCCCCCCCceeEEeCCCCC----CCceEeecccCCCCCcceEEEeeEEEECCEEeee
Q 017894 162 -------LVYQTASKY-KKRFSYCLPSSSSSTGHLTFGPGIK----KSVKFTPLSSAFQGSSFYGLDMTGISVGGEKLPI 229 (364)
Q Consensus 162 -------~~~q~~~~~-~~~fsl~l~~~~~~~g~l~fGg~d~----~~l~~~p~~~~~~~~~~w~v~l~~i~v~~~~~~~ 229 (364)
+.+|+..+. +++||+||.+. ..|.|+|||+|+ +++.|+|+... ..+|.|.+++|+|+++.+..
T Consensus 132 ~p~~~~~~~~~l~~~i~~~~FS~~l~~~--~~G~l~fGg~d~~~~~g~l~~~p~~~~---~~~w~v~l~~i~v~~~~~~~ 206 (325)
T 1ibq_A 132 QPKAQTTFFDTVKSQLDSPLFAVQLKHD--APGVYDFGYIDDSKYTGSITYTDADSS---QGYWGFSTDGYSIGDGSSSS 206 (325)
T ss_dssp BSSCCCCHHHHHGGGSSSSEEEEEEETT--EEEEEEESSCCGGGBSSCCEEEECBCT---TSSCEEEECEEEETTSCCBS
T ss_pred CcCCCCCHHHHHHHhcCCcEEEEEecCC--CCceEEECCcChhhccCceEEEEcCCC---CceEEEEECcEEECCeeccC
Confidence 456776543 79999999863 489999999984 79999999742 57899999999999986642
Q ss_pred ccccCCCCCEEEecCCcceecChhHHHHHHHHHHHHHhcCCCCCCccccccceeccCCccccCCeEEEEEcCCcEEEeCC
Q 017894 230 ATTVFSTPGTIIDSGTVITRLPPHAYTVLKTAFRQLMSKYPTAPAVSILDTCYDFSEHETITIPKISFFFNGGVEVDVDV 309 (364)
Q Consensus 230 ~~~~~~~~~aiiDtgt~~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~P~i~~~~~g~~~~~i~~ 309 (364)
. . ..+||||||++++||++++++|++++.+. .+....+. |.++|.. .+|+|+|+| +|++++||+
T Consensus 207 ~--~---~~aiiDSGTt~~~lP~~~~~~i~~~i~~a--~~~~~~g~------~~~~C~~--~~P~i~f~f-gg~~~~i~~ 270 (325)
T 1ibq_A 207 S--G---FSAIADTGTTLILLDDEIVSAYYEQVSGA--QESYEAGG------YVFSCST--DLPDFTVVI-GDYKAVVPG 270 (325)
T ss_dssp C--C---EEEEECTTCCSEEECHHHHHHHHTTSTTC--BCCSSSSS------CEEETTC--CCCCEEEEE-TTEEEEECH
T ss_pred C--C---ceEEEeCCCCcEeCCHHHHHHHHHhCCCc--eEcCcCCe------EEEEcCC--CCCcEEEEE-CCEEEEECH
Confidence 1 1 35999999999999999999999988432 12222222 5566763 789999999 899999999
Q ss_pred CceEEEcC--CCeEEEE-EEcCCCCCCeeEecccceeeeEEEEECCCCEEEEEeCC
Q 017894 310 TGIMFPIR--ASQVCLA-FAGNSDPSDVGIFGNVQQHTLEVVYDVAHGQVGFAAGG 362 (364)
Q Consensus 310 ~~~~~~~~--~~~~C~~-~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~rigfa~~~ 362 (364)
++|+++.. +...|+. +...+ ..+.||||.+|||++|+|||++++|||||+++
T Consensus 271 ~~~~~~~~~~~~~~C~~~i~~~~-~~~~~iLG~~fl~~~y~vfD~~~~~igfA~~~ 325 (325)
T 1ibq_A 271 KYINYAPVSTGSSTCYGGIQSNS-GLGLSILGDVFLKSQYVVFNSEGPKLGFAAQA 325 (325)
T ss_dssp HHHEEEESSTTCSEEEESEEECT-TTCSEEECHHHHTTEEEEEETTTTEEEEEEBC
T ss_pred HHhcccccCCCCCeEEEEEEcCC-CCCceEEChHHhcCEEEEEECCCCEEEeeeCC
Confidence 99998753 3479995 65542 34679999999999999999999999999974
No 30
>1izd_A Aspartic proteinase; sugar binding, acid protease, hydrolase; HET: MAN; 1.90A {Aspergillus oryzae} SCOP: b.50.1.2 PDB: 1ize_A*
Probab=100.00 E-value=1.7e-53 Score=393.88 Aligned_cols=302 Identities=23% Similarity=0.346 Sum_probs=244.3
Q ss_pred cccccccCCccCCccEEEEEEeCCCCcEEEEEEEcCCcceeEeCCCcccCcCCCCCCCCCCCCCCcccccCCCCCccCCc
Q 017894 7 ATLPAIHGSVVGSGNYIVTVGIGTPKRKFSLIFDTGSDLTWTQCKPCVGFCYQQKEKIFDPKRSKSYRNVSCSSTVCSSL 86 (364)
Q Consensus 7 ~~~p~~~~~~~~~~~y~~~i~iGtP~q~~~~~~DTgS~~~wv~~~~c~~~c~~~~~~~y~~s~Sst~~~~~~~~~~c~~~ 86 (364)
-++++.. ...+.+|+++|.|| +|+++|+|||||+++||+|..|.. |..+.++.|+|++|+ ++..
T Consensus 4 ~~v~~~~--~~~~~~Y~~~i~iG--~q~~~v~~DTGSs~lWv~~~~C~~-~~c~~~~~y~~~~Ss-~~~~---------- 67 (323)
T 1izd_A 4 GSVTTNP--TSNDEEYITQVTVG--DDTLGLDFDTGSADLWVFSSQTPS-SERSGHDYYTPGSSA-QKID---------- 67 (323)
T ss_dssp EEEEEEE--CGGGCCEEEEEEET--TEEEEEEEETTCCCEEECBTTSCH-HHHTTCCCBCCCTTC-EEEE----------
T ss_pred CceeeeE--cCCCCEEEEEEEEC--CEEEEEEEcCCCcceEEecCCCCc-ccccCCCCCCccccC-CccC----------
Confidence 3445443 23678999999999 899999999999999999999943 433345899999999 5532
Q ss_pred ccCCCCCCCCCCCCcceeeEEeCCCCceEEEEEEEEEEecCCCccCCeEEeeccCCCCCC---CCcCeEEecCCCCCh--
Q 017894 87 ESATGNIPGCASNKTCVYGIQYGDSSFSVGFFAKETLTLTSKDVFPKFLLGCGQNNRGLF---RGAAGLLGLGRNKIS-- 161 (364)
Q Consensus 87 ~~~~~~~~~c~~~~~~~~~~~y~~g~~~~G~~~~D~v~i~~~~~~~~~~fg~a~~~~~~~---~~~~GilGLg~~~~s-- 161 (364)
.+.|.+.|++|+.+.|.+++|+|+|++ ..++++.||+++...+.+ ..++||||||++.++
T Consensus 68 --------------~~~~~i~Yg~Gs~~~G~~~~D~v~ig~-~~v~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~ 132 (323)
T 1izd_A 68 --------------GATWSISYGDGSSASGDVYKDKVTVGG-VSYDSQAVESAEKVSSEFTQDTANDGLLGLAFSSINTV 132 (323)
T ss_dssp --------------EEEEEEECTTSCEEEEEEEEEEEEETT-EEEEEEEEEEEEEECHHHHHCTTCCEEEECSCGGGCCC
T ss_pred --------------CCeEEEEcCCCCeEEEEEEEEEEEECC-EEECceEEEEEEeccccccccCCCceEEecCccccccc
Confidence 579999999998789999999999999 799999999999875432 368999999997654
Q ss_pred -------hHHHhhhhc-CCcEEEeCCCCCCCceeEEeCCCCC----CCceEeecccCCCCCcceEEEeeEEEECCEEeee
Q 017894 162 -------LVYQTASKY-KKRFSYCLPSSSSSTGHLTFGPGIK----KSVKFTPLSSAFQGSSFYGLDMTGISVGGEKLPI 229 (364)
Q Consensus 162 -------~~~q~~~~~-~~~fsl~l~~~~~~~g~l~fGg~d~----~~l~~~p~~~~~~~~~~w~v~l~~i~v~~~~~~~ 229 (364)
+.+++..+. +++||+||.+. ..|.|+|||+|+ +++.|+|+... ..+|.|.+++|+|++ .+.
T Consensus 133 ~p~~~~~~~~~l~~~i~~~~FS~~L~~~--~~G~l~fGg~d~~~~~g~l~~~p~~~~---~~~w~v~l~~i~v~~-~~~- 205 (323)
T 1izd_A 133 QPTPQKTFFDNVKSSLSEPIFAVALKHN--APGVYDFGYTDSSKYTGSITYTDVDNS---QGFWGFTADGYSIGS-DSS- 205 (323)
T ss_dssp BSSCCCCHHHHHGGGSSSSEEEEECCTT--SCEEEEESSCCTTSEEEEEEEEECBCT---TSSCEEEESEEEETT-EEE-
T ss_pred CCCCCCCHHHHHHHhccCcEEEEEccCC--CCCEEEECCcCccccccceEEEECCCC---CceEEEEECeEEECC-ccc-
Confidence 456665443 69999999864 489999999995 58999999742 578999999999999 543
Q ss_pred ccccCCCCCEEEecCCcceecChhHHHHHHHHHHHHHhcCCCCCCccccccceeccCCccccCCeEEEEEcCCcEEEeCC
Q 017894 230 ATTVFSTPGTIIDSGTVITRLPPHAYTVLKTAFRQLMSKYPTAPAVSILDTCYDFSEHETITIPKISFFFNGGVEVDVDV 309 (364)
Q Consensus 230 ~~~~~~~~~aiiDtgt~~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~P~i~~~~~g~~~~~i~~ 309 (364)
... ..+||||||++++||.+++++|++++.+.. +....+ .|.++|.. .+|+|+|+| +|++++||+
T Consensus 206 -~~~---~~aiiDSGTs~~~lp~~~~~~i~~~i~ga~--~~~~~g------~~~~~C~~--~~P~i~f~f-gg~~~~i~~ 270 (323)
T 1izd_A 206 -SDS---ITGIADTGTTLLLLDDSIVDAYYEQVNGAS--YDSSQG------GYVFPSSA--SLPDFSVTI-GDYTATVPG 270 (323)
T ss_dssp -CCC---EEEEECTTCCSEEECHHHHHHHHTTSTTCE--EETTTT------EEEEETTC--CCCCEEEEE-TTEEEEECH
T ss_pred -CCC---ceEEEeCCCcceeCCHHHHHHHHHhCCCcE--EcCcCC------EEEEECCC--CCceEEEEE-CCEEEecCH
Confidence 211 359999999999999999999998884321 111112 26667763 789999999 899999999
Q ss_pred CceEEEcCCCeEEEE-EEcCCCCCCeeEecccceeeeEEEEECCCCEEEEEeCC
Q 017894 310 TGIMFPIRASQVCLA-FAGNSDPSDVGIFGNVQQHTLEVVYDVAHGQVGFAAGG 362 (364)
Q Consensus 310 ~~~~~~~~~~~~C~~-~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~rigfa~~~ 362 (364)
++|+++..++..|+. |...+ ..+.||||.+|||++|+|||++++|||||+++
T Consensus 271 ~~~~~~~~~~~~C~~~i~~~~-~~~~~IlG~~fl~~~y~vfD~~~~riGfA~~a 323 (323)
T 1izd_A 271 EYISFADVGNGQTFGGIQSNS-GIGFSIFGDVFLKSQYVVFDASGPRLGFAAQA 323 (323)
T ss_dssp HHHEEEECSTTEEEESEEECT-TTSSEEECHHHHTTEEEEEETTTTEEEEEEEC
T ss_pred HHeEEecCCCCeEEEEEEcCC-CCCcEEEChHHhcCEEEEEECCCCEEEEeeCC
Confidence 999988655679995 66553 35679999999999999999999999999974
No 31
>2qp8_A Beta-secretase 1; BACE1, protease, alternative splicing, aspartyl protease, glycoprotein, hydrolase, membrane, transmembrane, zymogen; HET: TAR SC7; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 2qk5_A* 2qmf_A* 2qmg_A* 2qmd_A* 4djx_A* 3l59_A* 3l5b_A* 3l5c_A* 3l58_A* 3l5d_A* 3l5f_A* 4dju_A* 4djv_A* 4djw_A* 3l5e_A* 4djy_A* 2zhv_A 2zhs_A 2zhr_A 2zhu_A ...
Probab=100.00 E-value=6.6e-53 Score=400.68 Aligned_cols=311 Identities=20% Similarity=0.335 Sum_probs=243.2
Q ss_pred ccCCccEEEEEEeCCCCcEEEEEEEcCCcceeEeCCCcccCcCCCCCCCCCCCCCCcccccCCCCCccCCcccCCCCCCC
Q 017894 16 VVGSGNYIVTVGIGTPKRKFSLIFDTGSDLTWTQCKPCVGFCYQQKEKIFDPKRSKSYRNVSCSSTVCSSLESATGNIPG 95 (364)
Q Consensus 16 ~~~~~~y~~~i~iGtP~q~~~~~~DTgS~~~wv~~~~c~~~c~~~~~~~y~~s~Sst~~~~~~~~~~c~~~~~~~~~~~~ 95 (364)
...+..|+++|.||||+|++.|+|||||+++||+|..|.. | ++.|+|++|+||+..
T Consensus 17 ~~~~~~Y~~~i~iGTP~Q~~~v~~DTGSs~lWv~~~~c~~-~----~~~y~~~~SsT~~~~------------------- 72 (395)
T 2qp8_A 17 GKSGQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-L----HRYYQRQLSSTYRDL------------------- 72 (395)
T ss_dssp EETTTEEEEEEEETTTTEEEEEEEETTCCCEEEECSCCTT-C----SCCCCGGGCTTCEEE-------------------
T ss_pred CCCCceEEEEEEecCCCceEEEEEecCCCceEEECCCCcc-c----cCCcCcccCCCceeC-------------------
Confidence 3456789999999999999999999999999999998732 2 378999999999987
Q ss_pred CCCCCcceeeEEeCCCCceEEEEEEEEEEecCCCccC-CeEEeeccCCCCCC---CCcCeEEecCCCCCh--------hH
Q 017894 96 CASNKTCVYGIQYGDSSFSVGFFAKETLTLTSKDVFP-KFLLGCGQNNRGLF---RGAAGLLGLGRNKIS--------LV 163 (364)
Q Consensus 96 c~~~~~~~~~~~y~~g~~~~G~~~~D~v~i~~~~~~~-~~~fg~a~~~~~~~---~~~~GilGLg~~~~s--------~~ 163 (364)
.|.|.+.|++|+ +.|.+++|+|+|++...++ .+.|++..+....| ..++||||||++.++ ++
T Consensus 73 -----~~~~~i~Yg~Gs-~~G~~~~Dtv~ig~g~~~~~~~~~~~~~~~~~~f~~~~~~dGIlGLg~~~~s~~~~~~~~~~ 146 (395)
T 2qp8_A 73 -----RKGVYVPYTQGK-WEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFF 146 (395)
T ss_dssp -----EEEEEEECSSCE-EEEEEEEEEEECTTSCSCEEEEEEEEEEEEESCSCTTCCCCEEEECSCGGGCSSCTTSCCHH
T ss_pred -----CceEEEEECCcE-EEEEEEeEEEEECCCCCceEEEEEEEEEccCcccccccCccceEEcCchhhccCCCCCCCHH
Confidence 578999999997 6999999999998323443 35677766544433 367999999997643 44
Q ss_pred HHhhhhc--CCcEEEeCCCC----------CCCceeEEeCCCCC----CCceEeecccCCCCCcceEEEeeEEEECCEEe
Q 017894 164 YQTASKY--KKRFSYCLPSS----------SSSTGHLTFGPGIK----KSVKFTPLSSAFQGSSFYGLDMTGISVGGEKL 227 (364)
Q Consensus 164 ~q~~~~~--~~~fsl~l~~~----------~~~~g~l~fGg~d~----~~l~~~p~~~~~~~~~~w~v~l~~i~v~~~~~ 227 (364)
.++..+. +++||+||.+. ....|.|+|||+|+ +++.|+|+.. ..+|.|.+++|+|+++.+
T Consensus 147 ~~l~~q~~i~~~FS~~L~~~~~~~~~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~----~~~~~v~l~~i~v~g~~~ 222 (395)
T 2qp8_A 147 DSLVKQTHVPNLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGSLWYTPIRR----EWYYEVIIVRVEINGQDL 222 (395)
T ss_dssp HHHHHHSCCCSCEEEEECCCSSCCCHHHHHHSCCEEEEETSCCGGGEEEEEEEEECCS----BTTBBCCEEEEEETTEEC
T ss_pred HHHHHccCCcceEEEEeccccccccccccccCCCcEEEECCcCcccccCceEEeccCC----CceEEEEEEEEEECCEEc
Confidence 4555442 47999999753 12589999999995 5899999987 679999999999999988
Q ss_pred eeccccCCCCCEEEecCCcceecChhHHHHHHHHHHHHHhcCCCCCCcc---ccccceeccCCccccCCeEEEEEcCCc-
Q 017894 228 PIATTVFSTPGTIIDSGTVITRLPPHAYTVLKTAFRQLMSKYPTAPAVS---ILDTCYDFSEHETITIPKISFFFNGGV- 303 (364)
Q Consensus 228 ~~~~~~~~~~~aiiDtgt~~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~---~~~~c~~~~~~~~~~~P~i~~~~~g~~- 303 (364)
.++...+....+||||||++++||.+++++|++++.+.... ....... ....|+..+......+|+|+|+|.++.
T Consensus 223 ~~~~~~~~~~~aiiDSGTt~~~lP~~~~~~l~~~i~~~~~~-~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~g~~~ 301 (395)
T 2qp8_A 223 KMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASST-EKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVT 301 (395)
T ss_dssp CCCGGGGGSSCEEECTTCCSEEEEHHHHHHHHHHHHHHTTT-SCCCHHHHTTCSCEEESTTCCCGGGSCCEEEEEECSST
T ss_pred ccCccccCCceEEEEcCCCcEecCHHHHHHHHHHHhhhccc-ccCCccccccccccccccccchHhhCCcEEEEEccCCC
Confidence 76544333356999999999999999999999999987431 1111111 123576654444457999999996543
Q ss_pred ----EEEeCCCceEEEcCC----CeEEE--EEEcCCCCCCeeEecccceeeeEEEEECCCCEEEEEeCCCC
Q 017894 304 ----EVDVDVTGIMFPIRA----SQVCL--AFAGNSDPSDVGIFGNVQQHTLEVVYDVAHGQVGFAAGGCS 364 (364)
Q Consensus 304 ----~~~i~~~~~~~~~~~----~~~C~--~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~rigfa~~~c~ 364 (364)
+++|+|++|+++... ...|+ ++... .+.||||.+|||++|+|||++++|||||+++|+
T Consensus 302 ~~~~~~~l~p~~yi~~~~~~~~~~~~C~~~~i~~~---~~~~ILG~~fl~~~yvvfD~~~~rIGfA~~~c~ 369 (395)
T 2qp8_A 302 NQSFRITILPQQYLRPVEDVATSQDDCYKFAISQS---STGTVMGAVIMEGFYVVFDRARKRIGFAVSACH 369 (395)
T ss_dssp TEEEEEEECHHHHEEEECCTTCCSCEEEEECEEEE---SSCEEECHHHHTTEEEEEETTTTEEEEEEETTC
T ss_pred CceEEEEECHHHhEeecccCCCCCceEEEEEecCC---CCcEEEChHHhCCeeEEEECCCCEEEEEeccCC
Confidence 799999999998532 35897 44432 356999999999999999999999999999995
No 32
>3lpj_A Beta-secretase 1; alzheimer'S, aspartyl protease, hydrolase; HET: TLA Z75; 1.79A {Homo sapiens} PDB: 3lpi_A* 3lpk_A* 3ohf_A* 3ohh_A* 3r2f_A* 3skf_A* 3skg_A* 4fse_A* 2hiz_A* 2p83_A* 2va7_A* 2va5_A* 2va6_A*
Probab=100.00 E-value=9.4e-53 Score=406.27 Aligned_cols=311 Identities=20% Similarity=0.356 Sum_probs=246.4
Q ss_pred CCccEEEEEEeCCCCcEEEEEEEcCCcceeEeCCCcccCcCCCCCCCCCCCCCCcccccCCCCCccCCcccCCCCCCCCC
Q 017894 18 GSGNYIVTVGIGTPKRKFSLIFDTGSDLTWTQCKPCVGFCYQQKEKIFDPKRSKSYRNVSCSSTVCSSLESATGNIPGCA 97 (364)
Q Consensus 18 ~~~~y~~~i~iGtP~q~~~~~~DTgS~~~wv~~~~c~~~c~~~~~~~y~~s~Sst~~~~~~~~~~c~~~~~~~~~~~~c~ 97 (364)
.+..|+++|.||||+|+++|+|||||+++||+|..| |..+ ..|+|++|+||+..
T Consensus 72 ~~~~Y~~~i~iGTP~Q~~~v~~DTGSs~lWV~~~~c---c~~~--~~y~~~~SsT~~~~--------------------- 125 (455)
T 3lpj_A 72 SGQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAPH---PFLH--RYYQRQLSSTYRDL--------------------- 125 (455)
T ss_dssp TTTEEEEEEEETTTTEEEEEEEETTCCCEEEECSCC---TTCS--CCCCGGGCTTCEEE---------------------
T ss_pred CCCEEEEEEEECCCCeEEEEEEcCCCcceEEecccc---cccC--CcccCCCCCCcccC---------------------
Confidence 445899999999999999999999999999999987 6544 89999999999997
Q ss_pred CCCcceeeEEeCCCCceEEEEEEEEEEecCCCccC-CeEEeeccCCCCCC---CCcCeEEecCCCCCh--------hHHH
Q 017894 98 SNKTCVYGIQYGDSSFSVGFFAKETLTLTSKDVFP-KFLLGCGQNNRGLF---RGAAGLLGLGRNKIS--------LVYQ 165 (364)
Q Consensus 98 ~~~~~~~~~~y~~g~~~~G~~~~D~v~i~~~~~~~-~~~fg~a~~~~~~~---~~~~GilGLg~~~~s--------~~~q 165 (364)
.+.|.+.|++|+ +.|.+++|+|+|++...+. .+.|+++.+....+ ..++||||||++.++ ++++
T Consensus 126 ---~~~~~i~Yg~Gs-~~G~~~~Dtv~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~~~~~~~~ 201 (455)
T 3lpj_A 126 ---RKGVYVPYTQGK-WEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDS 201 (455)
T ss_dssp ---EEEEEEECSSCE-EEEEEEEEEEECTTSCSCEEEEEEEEEEEEESCSCTTCCCCEEEECSCGGGCSSCTTSCCHHHH
T ss_pred ---CccEEEEeCCeE-EEEEEEEEEEEECCCcceeeEEEEEEEEccCcccccCCCcceEEEeCccccccccCCCCcHHHH
Confidence 579999999998 7999999999998522333 35688877665433 368999999987543 4556
Q ss_pred hhhhc--CCcEEEeCCCC----------CCCceeEEeCCCCC----CCceEeecccCCCCCcceEEEeeEEEECCEEeee
Q 017894 166 TASKY--KKRFSYCLPSS----------SSSTGHLTFGPGIK----KSVKFTPLSSAFQGSSFYGLDMTGISVGGEKLPI 229 (364)
Q Consensus 166 ~~~~~--~~~fsl~l~~~----------~~~~g~l~fGg~d~----~~l~~~p~~~~~~~~~~w~v~l~~i~v~~~~~~~ 229 (364)
+..+. .++||+||.+. ....|.|+|||+|+ +++.|+|+.. ..+|.|.+++|+|+++.+.+
T Consensus 202 L~~q~~i~~~FS~~L~~~~~~~~~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~----~~~w~v~l~~i~v~g~~~~~ 277 (455)
T 3lpj_A 202 LVKQTHVPNLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGSLWYTPIRR----EWYYEVIIVRVEINGQDLKM 277 (455)
T ss_dssp HHHHSCCCSCEEEEECCCSSCCCHHHHHHSCCEEEEETSCCGGGEEEEEEEEECCS----BTTBBCCEEEEEETTEECCC
T ss_pred HHHccCCCceeEEEeccccccccccccccCCCceEEECCcCcccccCceEEEecCC----CceeEEEEeEEEECCEEccc
Confidence 65553 47999999753 23489999999995 6999999987 68999999999999999876
Q ss_pred ccccCCCCCEEEecCCcceecChhHHHHHHHHHHHHHhcCCCCCCc---cccccceeccCCccccCCeEEEEEcCCc---
Q 017894 230 ATTVFSTPGTIIDSGTVITRLPPHAYTVLKTAFRQLMSKYPTAPAV---SILDTCYDFSEHETITIPKISFFFNGGV--- 303 (364)
Q Consensus 230 ~~~~~~~~~aiiDtgt~~~~lp~~~~~~l~~~l~~~~~~~~~~~~~---~~~~~c~~~~~~~~~~~P~i~~~~~g~~--- 303 (364)
+...+....++|||||++++||.+++++|++++.+.... ...... .....|+..+......+|+|+|+|.+..
T Consensus 278 ~~~~~~~~~aiiDSGTt~~~lP~~~~~~i~~~i~~~~~~-~~~~~~~~~g~~~~C~~~~~~~~~~~P~i~f~f~g~~~~~ 356 (455)
T 3lpj_A 278 DCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASST-EKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQ 356 (455)
T ss_dssp CGGGGGSSCEEECTTSSSEEEEHHHHHHHHHHHHHHTTT-SCCCHHHHTTCSCEEESTTCCCGGGSCCEEEEEECSSTTE
T ss_pred cccccCCCeEEEECCCcceeCCHHHHHHHHHHhhhhccc-cccCcccccCcceecccccCCchhcCCcEEEEEcCCCcCc
Confidence 544333356999999999999999999999999998431 111111 1134566554434446999999995443
Q ss_pred --EEEeCCCceEEEcCCC----eEEEEEEcCCCCCCeeEecccceeeeEEEEECCCCEEEEEeCCCC
Q 017894 304 --EVDVDVTGIMFPIRAS----QVCLAFAGNSDPSDVGIFGNVQQHTLEVVYDVAHGQVGFAAGGCS 364 (364)
Q Consensus 304 --~~~i~~~~~~~~~~~~----~~C~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~rigfa~~~c~ 364 (364)
+++|++++|+++.... ..|+++... ...+.||||.+|||++|+|||++++|||||+++|+
T Consensus 357 ~~~~~l~~~~yi~~~~~~~~~~~~C~~f~~~-~~~~~~ILG~~fl~~~yvvfD~~~~rIGfA~~~c~ 422 (455)
T 3lpj_A 357 SFRITILPQQYLRPVEDVATSQDDCYKFAIS-QSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSACH 422 (455)
T ss_dssp EEEEEECHHHHEEEECCTTCCSCEEEEECEE-EESSCEEECHHHHTTEEEEEETTTTEEEEEEETTC
T ss_pred eEEEEECHHHheEeccCCCCCCceEEEEecc-CCCCcEEEChHHhCCeEEEEECCCCEEEEEecccc
Confidence 5999999999985432 589864322 13457999999999999999999999999999995
No 33
>1bxo_A Protein (penicillopepsin); hydrolase, phosphonate inhibitors, macrocycle; HET: MAN PP7; 0.95A {Penicillium janthinellum} SCOP: b.50.1.2 PDB: 1apu_E* 1apv_E* 1apw_E* 1apt_E* 1bxq_A* 1ppk_E* 1ppl_E* 1ppm_E* 2wea_A* 2web_A* 2wec_A* 2wed_A* 3app_A
Probab=100.00 E-value=2.3e-53 Score=393.19 Aligned_cols=301 Identities=22% Similarity=0.315 Sum_probs=243.0
Q ss_pred cccccccCCccCCccEEEEEEeCCCCcEEEEEEEcCCcceeEeCCCcccCcCCCCCCCCCCCCCCcccccCCCCCccCCc
Q 017894 7 ATLPAIHGSVVGSGNYIVTVGIGTPKRKFSLIFDTGSDLTWTQCKPCVGFCYQQKEKIFDPKRSKSYRNVSCSSTVCSSL 86 (364)
Q Consensus 7 ~~~p~~~~~~~~~~~y~~~i~iGtP~q~~~~~~DTgS~~~wv~~~~c~~~c~~~~~~~y~~s~Sst~~~~~~~~~~c~~~ 86 (364)
-++++.. ...+..|+++|.|| +|++.|+|||||+++||+|..|.. |..+.++.|+|++|+ ++..
T Consensus 4 g~v~~~~--~~~~~~Y~~~i~iG--~Q~~~v~~DTGSs~lWv~~~~C~~-~~c~~~~~y~~~~Ss-~~~~---------- 67 (323)
T 1bxo_A 4 GVATNTP--TANDEEYITPVTIG--GTTLNLNFDTGSADLWVFSTELPA-SQQSGHSVYNPSATG-KELS---------- 67 (323)
T ss_dssp EEEEEEE--CGGGSCEEEEEEET--TEEEEEEEETTCCCEEECBTTSCH-HHHTTSCCBCHHHHC-EEEE----------
T ss_pred Cceeeee--cCCCCEEEEEEEEC--CEEEEEEEeCCCcceEEecCCCCc-hhccCCCCCCcccCC-cccC----------
Confidence 3455554 33678999999999 899999999999999999999943 443445899999999 5542
Q ss_pred ccCCCCCCCCCCCCcceeeEEeCCCCceEEEEEEEEEEecCCCccCCeEEeeccCCCCCC---CCcCeEEecCCCCCh--
Q 017894 87 ESATGNIPGCASNKTCVYGIQYGDSSFSVGFFAKETLTLTSKDVFPKFLLGCGQNNRGLF---RGAAGLLGLGRNKIS-- 161 (364)
Q Consensus 87 ~~~~~~~~~c~~~~~~~~~~~y~~g~~~~G~~~~D~v~i~~~~~~~~~~fg~a~~~~~~~---~~~~GilGLg~~~~s-- 161 (364)
.|.|.+.|++|+.+.|.+++|+|+|++ ..++++.||++....+.+ ...+||||||++.++
T Consensus 68 --------------~~~~~i~Yg~Gs~~~G~~~~D~v~ig~-~~v~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~ 132 (323)
T 1bxo_A 68 --------------GYTWSISYGDGSSASGNVFTDSVTVGG-VTAHGQAVQAAQQISAQFQQDTNNDGLLGLAFSSINTV 132 (323)
T ss_dssp --------------EEEEEEECTTSCEEEEEEEEEEEEETT-EEEEEEEEEEEEEECHHHHTCTTCSEEEECSCGGGCCC
T ss_pred --------------CCeEEEEeCCCCeEEEEEEEEEEEECC-EEECcEEEEEEEecCcccccCCCCceEEEeCccccccc
Confidence 589999999998789999999999999 699999999999865432 368999999997544
Q ss_pred -------hHHHhhhhc-CCcEEEeCCCCCCCceeEEeCCCCC----CCceEeecccCCCCCcceEEEeeEEEECCEEeee
Q 017894 162 -------LVYQTASKY-KKRFSYCLPSSSSSTGHLTFGPGIK----KSVKFTPLSSAFQGSSFYGLDMTGISVGGEKLPI 229 (364)
Q Consensus 162 -------~~~q~~~~~-~~~fsl~l~~~~~~~g~l~fGg~d~----~~l~~~p~~~~~~~~~~w~v~l~~i~v~~~~~~~ 229 (364)
+.+++..+. +++||+||.+. ..|.|+|||+|+ +++.|+|+... ..+|.|.+++|+|++ ...
T Consensus 133 ~~~~~~~~~~~l~~~i~~~~FS~~L~~~--~~G~l~fGg~d~~~~~g~l~~~p~~~~---~~~w~v~l~~i~v~~-~~~- 205 (323)
T 1bxo_A 133 QPQSQTTFFDTVKSSLAQPLFAVALKHQ--QPGVYDFGFIDSSKYTGSLTYTGVDNS---QGFWSFNVDSYTAGS-QSG- 205 (323)
T ss_dssp BSSCCCCHHHHHGGGBSSSEEEEECCSS--SCEEEEESSCCGGGBSSCCEEEECBCT---TSSCEEEEEEEEETT-EEE-
T ss_pred ccCCCCCHHHHHHHhcCCcEEEEEEeCC--CCceEEEeCcChhhccCceEEEECCCC---CCeEEEEEeeEEECC-ccC-
Confidence 456665443 69999999863 489999999984 79999999742 578999999999999 221
Q ss_pred ccccCCCCCEEEecCCcceecChhHHHHHHHHHHHHHhcCCCCCCccccccceeccCCccccCCeEEEEEcCCcEEEeCC
Q 017894 230 ATTVFSTPGTIIDSGTVITRLPPHAYTVLKTAFRQLMSKYPTAPAVSILDTCYDFSEHETITIPKISFFFNGGVEVDVDV 309 (364)
Q Consensus 230 ~~~~~~~~~aiiDtgt~~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~P~i~~~~~g~~~~~i~~ 309 (364)
. . ..+||||||++++||++++++|++++.+.. +....+ -|.++|.. .+|+|+|+| +|.+++||+
T Consensus 206 ~--~---~~aiiDSGTs~~~lP~~~~~~l~~~i~~a~--~~~~~g------~~~~~C~~--~~P~i~f~f-gg~~~~l~~ 269 (323)
T 1bxo_A 206 D--G---FSGIADTGTTLLLLDDSVVSQYYSQVSGAQ--QDSNAG------GYVFDCST--NLPDFSVSI-SGYTATVPG 269 (323)
T ss_dssp E--E---EEEEECTTCSSEEECHHHHHHHHTTSTTCE--EETTTT------EEEECTTC--CCCCEEEEE-TTEEEEECH
T ss_pred C--C---ceEEEeCCCCceeCCHHHHHHHHHhCCCce--EcCcCC------EEEEECCC--CCceEEEEE-CCEEEEECH
Confidence 1 1 349999999999999999999999884321 121112 25667763 789999999 899999999
Q ss_pred CceEEEcC-CCeEEEE-EEcCCCCCCeeEecccceeeeEEEEECCCCEEEEEeCC
Q 017894 310 TGIMFPIR-ASQVCLA-FAGNSDPSDVGIFGNVQQHTLEVVYDVAHGQVGFAAGG 362 (364)
Q Consensus 310 ~~~~~~~~-~~~~C~~-~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~rigfa~~~ 362 (364)
++|+++.. +...|+. |...+ ..+.||||.+|||++|+|||++++|||||+++
T Consensus 270 ~~~~~~~~~~~~~C~~~i~~~~-~~~~~ILG~~fl~~~y~vfD~~~~riGfA~~a 323 (323)
T 1bxo_A 270 SLINYGPSGDGSTCLGGIQSNS-GIGFSIFGDIFLKSQYVVFDSDGPQLGFAPQA 323 (323)
T ss_dssp HHHEEEECSSSSCEEESEEECT-TCSSEEECHHHHTTEEEEEETTTTEEEEEEBC
T ss_pred HHeEEeccCCCCeEEEEEECCC-CCCcEEEChHHHcCEEEEEECCCCEEEEecCC
Confidence 99998753 3478995 66553 34679999999999999999999999999974
No 34
>1b5f_A Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2
Probab=100.00 E-value=4.2e-42 Score=303.92 Aligned_cols=221 Identities=24% Similarity=0.442 Sum_probs=187.2
Q ss_pred CcccccccCCccCCccEEEEEEeCCCCcEEEEEEEcCCcceeEeCCCcc--cCcCCCCCCCCCCCCCCcccccCCCCCcc
Q 017894 6 AATLPAIHGSVVGSGNYIVTVGIGTPKRKFSLIFDTGSDLTWTQCKPCV--GFCYQQKEKIFDPKRSKSYRNVSCSSTVC 83 (364)
Q Consensus 6 ~~~~p~~~~~~~~~~~y~~~i~iGtP~q~~~~~~DTgS~~~wv~~~~c~--~~c~~~~~~~y~~s~Sst~~~~~~~~~~c 83 (364)
...+||+ ++.+.+|+++|.||||+|++.|+|||||+++||+|..|. ..|..+ ..|+|++|+||+..
T Consensus 2 ~~~~~l~---n~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~lWv~~~~C~~~~~C~~~--~~y~~~~SsT~~~~------- 69 (239)
T 1b5f_A 2 SAVVALT---NDRDTSYFGEIGIGTPPQKFTVIFDTGSSVLWVPSSKCINSKACRAH--SMYESSDSSTYKEN------- 69 (239)
T ss_dssp CEEEEEE---EETTTEEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSCHHHHTS--CCBCGGGCTTCEEE-------
T ss_pred Cceeeee---ecCCCEEEEEEEECCCCeEEEEEEeCCCcceEEEcCCCCCCcccCCC--CCCCCccCCCeeeC-------
Confidence 3467887 778899999999999999999999999999999999994 468765 78999999999986
Q ss_pred CCcccCCCCCCCCCCCCcceeeEEeCCCCceEEEEEEEEEEecCCCccCCeEEeeccCCCC-C--CCCcCeEEecCCCCC
Q 017894 84 SSLESATGNIPGCASNKTCVYGIQYGDSSFSVGFFAKETLTLTSKDVFPKFLLGCGQNNRG-L--FRGAAGLLGLGRNKI 160 (364)
Q Consensus 84 ~~~~~~~~~~~~c~~~~~~~~~~~y~~g~~~~G~~~~D~v~i~~~~~~~~~~fg~a~~~~~-~--~~~~~GilGLg~~~~ 160 (364)
.+.|.+.|++|+ +.|.+++|+|+|++ ..++++.||++....+ . ...++||||||++.+
T Consensus 70 -----------------~~~~~i~Yg~Gs-~~G~~~~D~v~~g~-~~v~~~~fg~~~~~~~~~f~~~~~~GilGLg~~~~ 130 (239)
T 1b5f_A 70 -----------------GTFGAIIYGTGS-ITGFFSQDSVTIGD-LVVKEQDFIEATDEADNVFLHRLFDGILGLSFQTI 130 (239)
T ss_dssp -----------------EEEEEEECSSCE-EEEEEEEEEEEETT-EEEEEEEEEEEEEECHHHHTTCSCCEEEECSCCSS
T ss_pred -----------------CcEEEEEECCCc-EEEEEEEEEEEECC-cEEccEEEEEEEeccCccccccCcceEEecCcccc
Confidence 578999999997 89999999999999 6999999999987643 1 236899999999987
Q ss_pred h--hHHHhhhhc---CCcEEEeCCCCC--CCceeEEeCCCCC----CCceEeecccCCCCCcceEEEeeEEEECCEEeee
Q 017894 161 S--LVYQTASKY---KKRFSYCLPSSS--SSTGHLTFGPGIK----KSVKFTPLSSAFQGSSFYGLDMTGISVGGEKLPI 229 (364)
Q Consensus 161 s--~~~q~~~~~---~~~fsl~l~~~~--~~~g~l~fGg~d~----~~l~~~p~~~~~~~~~~w~v~l~~i~v~~~~~~~ 229 (364)
+ +..++..+. +++||+||.+.. ...|.|+||++|+ +++.|+|+.. ..+|.|.+++|+|+++.+.+
T Consensus 131 s~p~~~~l~~qg~i~~~~FS~~l~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~----~~~~~v~l~~i~v~~~~~~~ 206 (239)
T 1b5f_A 131 SVPVWYNMLNQGLVKERRFSFWLNRNVDEEEGGELVFGGLDPNHFRGDHTYVPVTY----QYYWQFGIGDVLIGDKSTGF 206 (239)
T ss_dssp SCCHHHHHHHTTCCSSSEEEEEECCSCSSSCCEEEEETSCCGGGEEEEEEEEEEEE----ETTEEEEECCEEETTEECCT
T ss_pred ccHHHHHHHHCCCCCCCEEEEEEeCCCCCCCCeEEEECCcChhhccCceEEEEccc----CCeEEEEeeEEEECCEEecc
Confidence 6 333443331 699999998752 3589999999995 5899999987 67999999999999998764
Q ss_pred ccccCCCCCEEEecCCcceecChhHHHHHHHHHHH
Q 017894 230 ATTVFSTPGTIIDSGTVITRLPPHAYTVLKTAFRQ 264 (364)
Q Consensus 230 ~~~~~~~~~aiiDtgt~~~~lp~~~~~~l~~~l~~ 264 (364)
.... ..++|||||++++||.+++++|++++++
T Consensus 207 ~~~~---~~aiiDTGTt~~~lP~~~~~~i~~~iga 238 (239)
T 1b5f_A 207 CAPG---CQAFADSGTSLLSGPTAIVTQINHAIGA 238 (239)
T ss_dssp TTTC---EEEEECTTCSSEEECHHHHHHHHHHTTC
T ss_pred cCCC---CEEEEecCcchhhCCHHHHHHHHHHhCC
Confidence 3322 3599999999999999999999998764
No 35
>1lya_B Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_B* 1lyw_B*
Probab=100.00 E-value=5.8e-37 Score=271.73 Aligned_cols=215 Identities=20% Similarity=0.335 Sum_probs=174.9
Q ss_pred CccCCeEEeeccCCCC-CC--CCcCeEEecCCCCCh------hHHHhhhhc---CCcEEEeCCCCCCC--ceeEEeCCCC
Q 017894 129 DVFPKFLLGCGQNNRG-LF--RGAAGLLGLGRNKIS------LVYQTASKY---KKRFSYCLPSSSSS--TGHLTFGPGI 194 (364)
Q Consensus 129 ~~~~~~~fg~a~~~~~-~~--~~~~GilGLg~~~~s------~~~q~~~~~---~~~fsl~l~~~~~~--~g~l~fGg~d 194 (364)
++++++.||+++...+ .+ ..++||||||++.++ +++|+..+. +++||+||.+.... .|.|+|||+|
T Consensus 3 ~~v~~~~Fg~~~~~~~~~f~~~~~dGilGLg~~~~s~~~~~~~~~~l~~qg~i~~~~FS~~l~~~~~~~~~G~l~fGg~d 82 (241)
T 1lya_B 3 VKVERQVFGEATKQPGITFIAAKFDGILGMAYPRISVNNVLPVFDNLMQQKLVDQNIFSFYLSRDPDAQPGGELMLGGTD 82 (241)
T ss_dssp EEEEEEEEEEEEECCSSTTTSCSSSEEEECSCGGGCGGGCCCHHHHHHHTTCSSSSEEEEEECSSTTCSSCEEEEETSCC
T ss_pred eEECCeEEEEEEEccCCccccccCCEEEECCcchhhccCCChHHHHHHHCCCCCCCEEEEEEeCCCCCCCCcEEEECCcC
Confidence 5788999999998755 33 378999999998654 456666542 69999999886543 8999999999
Q ss_pred C----CCceEeecccCCCCCcceEEEeeEEEECCEEeeeccccCCCCCEEEecCCcceecChhHHHHHHHHHHHHHhcCC
Q 017894 195 K----KSVKFTPLSSAFQGSSFYGLDMTGISVGGEKLPIATTVFSTPGTIIDSGTVITRLPPHAYTVLKTAFRQLMSKYP 270 (364)
Q Consensus 195 ~----~~l~~~p~~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~~~aiiDtgt~~~~lp~~~~~~l~~~l~~~~~~~~ 270 (364)
+ +++.|+|+.. ..+|+|.+++|+|+++.+..... ..++|||||++++||.+++++|++++++...
T Consensus 83 ~~~~~g~l~~~p~~~----~~~~~v~l~~i~v~~~~~~~~~~----~~aiiDSGTt~~~lP~~~~~~l~~~~~~~~~--- 151 (241)
T 1lya_B 83 SKYYKGSLSYLNVTR----KAYWQVHLDQVEVASGLTLCKEG----CEAIVDTGTSLMVGPVDEVRELQKAIGAVPL--- 151 (241)
T ss_dssp GGGEEEEEEEEECSS----BTTBEEEEEEEEETTSCEESTTC----EEEEECTTCSSEEECHHHHHHHHHHHTCEEE---
T ss_pred HHHcCCceEEEECcc----ccEEEEEEeEEEECCeeEeccCC----CEEEEECCCccccCCHHHHHHHHHHhCCeec---
Confidence 5 6899999987 67999999999999986532211 3599999999999999999999999866521
Q ss_pred CCCCccccccceeccCCccccCCeEEEEEcCCcEEEeCCCceEEEcCC--CeEEE-EEEcCC---CCCCeeEecccceee
Q 017894 271 TAPAVSILDTCYDFSEHETITIPKISFFFNGGVEVDVDVTGIMFPIRA--SQVCL-AFAGNS---DPSDVGIFGNVQQHT 344 (364)
Q Consensus 271 ~~~~~~~~~~c~~~~~~~~~~~P~i~~~~~g~~~~~i~~~~~~~~~~~--~~~C~-~~~~~~---~~~~~~ilG~~fl~~ 344 (364)
..+ .|.++|.....+|+|+|.| +|.+++|++++|+++... +..|+ +|...+ ...+.||||.+|||+
T Consensus 152 -~~g------~~~~~C~~~~~~p~i~f~f-~g~~~~l~~~~y~~~~~~~~~~~C~~~~~~~~~~~~~~~~~ilG~~fl~~ 223 (241)
T 1lya_B 152 -IQG------EYMIPCEKVSTLPAITLKL-GGKGYKLSPEDYTLKVSQAGKTLCLSGFMGMDIPPPSGPLWILGDVFIGR 223 (241)
T ss_dssp -ETT------EEEEEGGGGGGSCCEEEEE-TTEEEEECTTTSEEEETTTTSSEEEESEEECCCCTTTCCCEEECHHHHTT
T ss_pred -cCC------cEEEECCCCccCCeEEEEE-CCEEEEECHHHhEEEccCCCCCeeEEEEEecccCCCCCCeEEechHHhcc
Confidence 111 2677888777899999999 889999999999998542 46898 577653 135679999999999
Q ss_pred eEEEEECCCCEEEEEeCC
Q 017894 345 LEVVYDVAHGQVGFAAGG 362 (364)
Q Consensus 345 ~y~vfD~~~~rigfa~~~ 362 (364)
+|+|||++++|||||+++
T Consensus 224 ~y~vfD~~~~~igfA~~~ 241 (241)
T 1lya_B 224 YYTVFDRDNNRVGFAEAA 241 (241)
T ss_dssp EEEEEETTTTEEEEEEEC
T ss_pred eEEEEECCCCEEEEEEcC
Confidence 999999999999999974
No 36
>1lya_A Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_A* 1lyw_A*
Probab=99.89 E-value=3.6e-23 Score=155.22 Aligned_cols=92 Identities=25% Similarity=0.533 Sum_probs=83.3
Q ss_pred CcccccccCCccCCccEEEEEEeCCCCcEEEEEEEcCCcceeEeCCCcc---cCcCCCCCCCCCCCCCCcccccCCCCCc
Q 017894 6 AATLPAIHGSVVGSGNYIVTVGIGTPKRKFSLIFDTGSDLTWTQCKPCV---GFCYQQKEKIFDPKRSKSYRNVSCSSTV 82 (364)
Q Consensus 6 ~~~~p~~~~~~~~~~~y~~~i~iGtP~q~~~~~~DTgS~~~wv~~~~c~---~~c~~~~~~~y~~s~Sst~~~~~~~~~~ 82 (364)
.+.+||+ +..+..|+++|.||||+|++.|+|||||+++||++..|. ..|..+ ..|+|++|+||+..
T Consensus 2 ~~~~~l~---n~~~~~Y~~~i~iGTP~Q~~~v~~DTGSs~lWv~~~~C~~~~~~C~~~--~~y~p~~SsT~~~~------ 70 (97)
T 1lya_A 2 PIPEVLK---NYMDAQYYGEIGIGTPPQCFTVVFDTGSSNLWVPSIHCKLLDIACWIH--HKYNSDKSSTYVKN------ 70 (97)
T ss_dssp CEEEEEE---EETTTEEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCTTCHHHHTS--CCBCGGGCTTCEEE------
T ss_pred CceEeeE---ECCCCeEEEEEEECCCCeEEEEEEeCCCCceEEeEcCccCcccccCCC--CCCCchhCCCceeC------
Confidence 3467887 678899999999999999999999999999999999996 378765 89999999999987
Q ss_pred cCCcccCCCCCCCCCCCCcceeeEEeCCCCceEEEEEEEEEEecC
Q 017894 83 CSSLESATGNIPGCASNKTCVYGIQYGDSSFSVGFFAKETLTLTS 127 (364)
Q Consensus 83 c~~~~~~~~~~~~c~~~~~~~~~~~y~~g~~~~G~~~~D~v~i~~ 127 (364)
.+.|.+.|++|+ +.|.++.|+|+|++
T Consensus 71 ------------------~~~~~i~Yg~Gs-~~G~~~~Dtv~i~g 96 (97)
T 1lya_A 71 ------------------GTSFDIHYGSGS-LSGYLSQDTVSVPC 96 (97)
T ss_dssp ------------------EEEEEEECSSCE-EEEEEEEEEEEESC
T ss_pred ------------------CCcEEEEECCcE-EEEEEEEEEEEECC
Confidence 579999999998 89999999999987
No 37
>1b5f_B Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2
Probab=99.72 E-value=7.4e-18 Score=124.09 Aligned_cols=80 Identities=20% Similarity=0.387 Sum_probs=68.5
Q ss_pred eeccCCccccCCeEEEEEcCCcEEEeCCCceEEEcCC--CeEEE-EEEcCC--CCCCeeEecccceeeeEEEEECCCCEE
Q 017894 282 YDFSEHETITIPKISFFFNGGVEVDVDVTGIMFPIRA--SQVCL-AFAGNS--DPSDVGIFGNVQQHTLEVVYDVAHGQV 356 (364)
Q Consensus 282 ~~~~~~~~~~~P~i~~~~~g~~~~~i~~~~~~~~~~~--~~~C~-~~~~~~--~~~~~~ilG~~fl~~~y~vfD~~~~ri 356 (364)
|.++|+....+|+|+|+| +|.+++|+|++|+++... ...|+ +++..+ ...+.||||..|||++|+|||++++||
T Consensus 3 y~v~C~~~~~~P~i~f~~-gg~~~~l~~~~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~ILGd~Fl~~~y~vfD~~~~ri 81 (87)
T 1b5f_B 3 LQVDCNTLSSMPNVSFTI-GGKKFGLTPEQYILKVGKGEATQCISGFTAMDATLLGPLWILGDVFMRPYHTVFDYGNLLV 81 (87)
T ss_dssp CEECGGGGGGCCCEEEEE-TTEEEEECHHHHEEEESCTTTCEEEESEEECCCBSSSBEEEECHHHHTTEEEEEETTTTEE
T ss_pred EEEECCCCCcCCcEEEEE-CCEEEEECHHHhEEEccCCCCCEEEEEEEECCCCCCCCeEEechHHhccEEEEEECCCCEE
Confidence 678888778899999999 789999999999998532 46898 577653 235689999999999999999999999
Q ss_pred EEEeCC
Q 017894 357 GFAAGG 362 (364)
Q Consensus 357 gfa~~~ 362 (364)
|||+++
T Consensus 82 GfA~~~ 87 (87)
T 1b5f_B 82 GFAEAA 87 (87)
T ss_dssp EEEEEC
T ss_pred EEEEcC
Confidence 999974
No 38
>2i1a_A DNA damage-inducible protein DDI1; acid protease fold, dimer, retroviral protease domain, protein turnover; HET: DNA; 2.30A {Saccharomyces cerevisiae}
Probab=93.77 E-value=0.12 Score=40.68 Aligned_cols=109 Identities=7% Similarity=-0.034 Sum_probs=59.9
Q ss_pred cceEEEeeEEEECCEEeeeccccCCCCCEEEecCCcceecChhHHHHHHHHHHHHHhcCCCCC-CccccccceeccCCcc
Q 017894 211 SFYGLDMTGISVGGEKLPIATTVFSTPGTIIDSGTVITRLPPHAYTVLKTAFRQLMSKYPTAP-AVSILDTCYDFSEHET 289 (364)
Q Consensus 211 ~~w~v~l~~i~v~~~~~~~~~~~~~~~~aiiDtgt~~~~lp~~~~~~l~~~l~~~~~~~~~~~-~~~~~~~c~~~~~~~~ 289 (364)
+.+.++ +.+||+++. ++||||++...++.+..+.+ +.....-.... ...+.. -. .+ .
T Consensus 25 ~~~~v~---v~InG~~~~----------~LvDTGAs~s~is~~~a~~l----gl~~~~~~~~~~~a~g~g--~~-~~--~ 82 (148)
T 2i1a_A 25 PMLYIN---IEINNYPVK----------AFVDTGAQTTIMSTRLAKKT----GLSRMIDKRFIGEARGVG--TG-KI--I 82 (148)
T ss_dssp CCCEEE---EEETTEEEE----------EEECTTCSSCEEEHHHHHHH----TGGGGCBCCCC----------------C
T ss_pred ceEEEE---EEECCEEEE----------EEEECCCCccccCHHHHHHc----CCCccCCcceEEEEecCC--Cc-cc--c
Confidence 345555 678998654 99999999999998776654 22110000000 000000 00 00 0
Q ss_pred ccCCeEEEEEcCCcEEEeCCCceEEEcCCCeEEEEEEcCCCCCCeeEecccceeeeEEEEECCCCEEEEE
Q 017894 290 ITIPKISFFFNGGVEVDVDVTGIMFPIRASQVCLAFAGNSDPSDVGIFGNVQQHTLEVVYDVAHGQVGFA 359 (364)
Q Consensus 290 ~~~P~i~~~~~g~~~~~i~~~~~~~~~~~~~~C~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~rigfa 359 (364)
......++.+ |+..+.+ ++ .+... .-..|||..||+++-+.+|+.+++|-|.
T Consensus 83 ~~~~~~~i~i-g~~~~~~---~~-----------~vl~~---~~d~iLG~d~L~~~~~~ID~~~~~l~l~ 134 (148)
T 2i1a_A 83 GRIHQAQVKI-ETQYIPC---SF-----------TVLDT---DIDVLIGLDMLKRHLACVDLKENVLRIA 134 (148)
T ss_dssp EEEEEEEEEE-TTEEEEE---EE-----------EEECS---SCSEEECHHHHHHTTCEEETTTTEEEET
T ss_pred cEEEEEEEEE-CCEEece---eE-----------EEecC---CCCeEecHHHHhhCCEEEECCCCEEEEc
Confidence 0112235555 4433221 11 12221 1238999999999999999999999885
No 39
>3s8i_A Protein DDI1 homolog 1; protease, structural genomics, structural genomics consortiu retropepsin-like domain, protein turnover, hydrolase; 1.70A {Homo sapiens}
Probab=93.00 E-value=0.2 Score=39.61 Aligned_cols=108 Identities=13% Similarity=0.149 Sum_probs=61.4
Q ss_pred ceEEEeeEEEECCEEeeeccccCCCCCEEEecCCcceecChhHHHHHHHHHHHHHh-cCC-CCCCccccccceeccCCcc
Q 017894 212 FYGLDMTGISVGGEKLPIATTVFSTPGTIIDSGTVITRLPPHAYTVLKTAFRQLMS-KYP-TAPAVSILDTCYDFSEHET 289 (364)
Q Consensus 212 ~w~v~l~~i~v~~~~~~~~~~~~~~~~aiiDtgt~~~~lp~~~~~~l~~~l~~~~~-~~~-~~~~~~~~~~c~~~~~~~~ 289 (364)
.+.++ +.+||+++. ++||||++.+.++.+.++++-- ..... .+. ...+. ....+ .
T Consensus 24 ~l~v~---~~Ing~~v~----------~LVDTGAs~s~Is~~~A~rlGL--~~~~~~~~~~~a~g~-G~~~~-------~ 80 (148)
T 3s8i_A 24 MLYIN---CKVNGHPLK----------AFVDSGAQMTIMSQACAERCNI--MRLVDRRWAGVAKGV-GTQRI-------I 80 (148)
T ss_dssp CCEEE---EEETTEEEE----------EEECTTCSSCEEEHHHHHHTTC--GGGEEGGGCEECCC----CEE-------E
T ss_pred EEEEE---EEECCEEEE----------EEEeCCCCcEeeCHHHHHHcCC--ccccCcceeEEEEcC-CccEE-------E
Confidence 44454 568888765 9999999999999988887611 00000 000 00000 00000 0
Q ss_pred ccCCeEEEEEcCCcEEEeCCCceEEEcCCCeEEE-EEEcCCCCCCeeEecccceeeeEEEEECCCCEEEEEe
Q 017894 290 ITIPKISFFFNGGVEVDVDVTGIMFPIRASQVCL-AFAGNSDPSDVGIFGNVQQHTLEVVYDVAHGQVGFAA 360 (364)
Q Consensus 290 ~~~P~i~~~~~g~~~~~i~~~~~~~~~~~~~~C~-~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~rigfa~ 360 (364)
...+...+.+ |+..+ .|- .+... ..-..+||..||+.+-.+.|+.++++-|.+
T Consensus 81 g~v~~~~I~I-g~~~~---------------~~~~~Vle~--~~~d~LLGmD~L~~~~~~ID~~~~~L~l~~ 134 (148)
T 3s8i_A 81 GRVHLAQIQI-EGDFL---------------QCSFSILED--QPMDMLLGLDMLRRHQCSIDLKKNVLVIGT 134 (148)
T ss_dssp EEEEEEEEEE-TTEEE---------------EEEEEEETT--CSSSEEECHHHHHHTTCEEETTTTEEECTT
T ss_pred EEEEEEEEEE-CCEEE---------------EEEEEEeCC--CCcCeeccHHHHHhCCEEEEcCCCEEEEcc
Confidence 1122344555 33321 132 22222 223489999999999999999999998864
No 40
>2i1a_A DNA damage-inducible protein DDI1; acid protease fold, dimer, retroviral protease domain, protein turnover; HET: DNA; 2.30A {Saccharomyces cerevisiae}
Probab=88.18 E-value=0.45 Score=37.35 Aligned_cols=37 Identities=16% Similarity=0.230 Sum_probs=27.0
Q ss_pred cccccCCccCCccEEEEEEeCCCCcEEEEEEEcCCcceeEeC
Q 017894 9 LPAIHGSVVGSGNYIVTVGIGTPKRKFSLIFDTGSDLTWTQC 50 (364)
Q Consensus 9 ~p~~~~~~~~~~~y~~~i~iGtP~q~~~~~~DTgS~~~wv~~ 50 (364)
+|... ...+.+++++.|+ ++++++++|||++.+.+..
T Consensus 17 ~p~~~---~~~~~~~v~v~In--G~~~~~LvDTGAs~s~is~ 53 (148)
T 2i1a_A 17 TPEMF---TQVPMLYINIEIN--NYPVKAFVDTGAQTTIMST 53 (148)
T ss_dssp ---------CCCCCEEEEEET--TEEEEEEECTTCSSCEEEH
T ss_pred Cchhh---cccceEEEEEEEC--CEEEEEEEECCCCccccCH
Confidence 45553 2456788999998 8999999999999998853
No 41
>1fmb_A EIAV protease; hydrolase (acid proteinase), RNA-directed DNA polymerase, AS protease, endonuclease, polyprotein; HET: HYB; 1.80A {Equine infectious anemia virus} SCOP: b.50.1.1 PDB: 2fmb_A*
Probab=84.26 E-value=1 Score=33.01 Aligned_cols=26 Identities=23% Similarity=0.312 Sum_probs=23.7
Q ss_pred EEEEEEeCCCCcEEEEEEEcCCcceeEe
Q 017894 22 YIVTVGIGTPKRKFSLIFDTGSDLTWTQ 49 (364)
Q Consensus 22 y~~~i~iGtP~q~~~~~~DTgS~~~wv~ 49 (364)
-++.+.|| +|.+.+++|||+.+|-+.
T Consensus 9 P~v~v~I~--Gq~~e~LLDTGAD~TVl~ 34 (104)
T 1fmb_A 9 PTTIVLIN--DTPLNVLLDTGADTSVLT 34 (104)
T ss_dssp CEEEEEET--TEEEEEEECTTCSSCEEE
T ss_pred CEEEEEEC--CEEEEEEeccCCCcEEEc
Confidence 36889999 899999999999999996
No 42
>2hs1_A HIV-1 protease; ultra-high resolution active site surface binding site, HYDR; HET: 017; 0.84A {Human immunodeficiency virus 1} PDB: 3nu4_A* 3tl9_A* 3tkw_A* 3tkg_A* 3ndu_A* 3ndt_A* 3k4v_A* 3a2o_A* 1fgc_C* 2a1e_A* 2aod_A* 2aoi_A* 2aoj_A* 2hb3_A* 2ien_A* 1sdt_A* 2z4o_A* 2zye_A* 2nmw_A* 3b7v_A* ...
Probab=83.85 E-value=1.1 Score=32.48 Aligned_cols=27 Identities=33% Similarity=0.410 Sum_probs=24.1
Q ss_pred EEEEEeCCCCcEEEEEEEcCCcceeEeCC
Q 017894 23 IVTVGIGTPKRKFSLIFDTGSDLTWTQCK 51 (364)
Q Consensus 23 ~~~i~iGtP~q~~~~~~DTgS~~~wv~~~ 51 (364)
++.+.|| +|.+.+++|||..++-+...
T Consensus 10 ~vtvkI~--Gq~~eaLLDTGAD~TVl~~~ 36 (99)
T 2hs1_A 10 LVTIKIG--GQLKEALLDTGADDTIIEEM 36 (99)
T ss_dssp EEEEEET--TEEEEEEECTTCSSEEESCC
T ss_pred EEEEEEC--CEEEEEEeccCCCcEEEecc
Confidence 5789999 89999999999999999544
No 43
>3s8i_A Protein DDI1 homolog 1; protease, structural genomics, structural genomics consortiu retropepsin-like domain, protein turnover, hydrolase; 1.70A {Homo sapiens}
Probab=82.56 E-value=1.2 Score=35.02 Aligned_cols=32 Identities=9% Similarity=0.169 Sum_probs=27.0
Q ss_pred CCccEEEEEEeCCCCcEEEEEEEcCCcceeEeCC
Q 017894 18 GSGNYIVTVGIGTPKRKFSLIFDTGSDLTWTQCK 51 (364)
Q Consensus 18 ~~~~y~~~i~iGtP~q~~~~~~DTgS~~~wv~~~ 51 (364)
....+++++.|+ ++++++++|||++.+.+...
T Consensus 21 ~~~~l~v~~~In--g~~v~~LVDTGAs~s~Is~~ 52 (148)
T 3s8i_A 21 QVTMLYINCKVN--GHPLKAFVDSGAQMTIMSQA 52 (148)
T ss_dssp -CCCCEEEEEET--TEEEEEEECTTCSSCEEEHH
T ss_pred ccCEEEEEEEEC--CEEEEEEEeCCCCcEeeCHH
Confidence 446788999998 89999999999999999543
No 44
>3ec0_A Protease; HIV-2, inhibitor, hydrolase; HET: GRL; 1.18A {Human immunodeficiency virus type 2} SCOP: b.50.1.1 PDB: 1hii_A* 1hsi_A 1hsh_A* 1idb_A* 1jld_A* 2mip_A 1ida_A* 3ebz_A* 3ecg_A* 3s45_A* 4upj_A* 1ivq_A* 1ivp_A 2hpf_A 3upj_A* 2hpe_A* 5upj_A* 6upj_A* 1sip_A 1tcw_A* ...
Probab=81.42 E-value=2.2 Score=30.87 Aligned_cols=28 Identities=25% Similarity=0.305 Sum_probs=24.5
Q ss_pred EEEEEeCCCCcEEEEEEEcCCcceeEeCCC
Q 017894 23 IVTVGIGTPKRKFSLIFDTGSDLTWTQCKP 52 (364)
Q Consensus 23 ~~~i~iGtP~q~~~~~~DTgS~~~wv~~~~ 52 (364)
++.+.|| +|.+..++|||..++-+...+
T Consensus 10 ~vti~I~--Gq~~e~LLDTGAD~TVl~~~~ 37 (99)
T 3ec0_A 10 VVTAYIE--GQPVEVLLDTGADDSIVAGIE 37 (99)
T ss_dssp EEEEEET--TEEEEEEECTTCSSCEESSCC
T ss_pred eEEEEEC--CEEEEEEEecCCCceEEcCcc
Confidence 5789999 999999999999999995443
No 45
>3liy_A Protease; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.86A {Human t-lymphotropic virus 1} PDB: 2b7f_A* 3liq_A* 3lit_A* 3liv_A* 3lix_A* 3lin_A*
Probab=77.45 E-value=2.5 Score=31.35 Aligned_cols=31 Identities=16% Similarity=0.355 Sum_probs=25.9
Q ss_pred EEEEEeC---CCCcEEEEEEEcCCcceeEeCCCc
Q 017894 23 IVTVGIG---TPKRKFSLIFDTGSDLTWTQCKPC 53 (364)
Q Consensus 23 ~~~i~iG---tP~q~~~~~~DTgS~~~wv~~~~c 53 (364)
.+.+.|| +|+|.+..++|||..+|-+....+
T Consensus 12 lvtikI~~~~~~Gq~~eaLLDTGADdTVl~~~~l 45 (116)
T 3liy_A 12 VIKAQVDTQTSHPKTIEALLDTGADMTVIPIALF 45 (116)
T ss_dssp EEEEEEECSSSCCEEEEEEECTTBSSCEEEGGGS
T ss_pred eEEEEEccccCCCeEeEEEeccCCCccEEecccC
Confidence 4666776 789999999999999999976654
No 46
>2hah_A Protease, retropepsin; retroviral, aspartyl, hydrolase-hydrolase complex; HET: 3TL; 1.70A {Feline immunodeficiency virus} PDB: 3ogp_A* 3ogq_A* 2fiv_A* 6fiv_A* 3fiv_A* 5fiv_A* 4fiv_A* 1fiv_A* 1b11_A*
Probab=75.28 E-value=2.8 Score=31.38 Aligned_cols=26 Identities=23% Similarity=0.365 Sum_probs=22.9
Q ss_pred EEEEEEeCCCCcEEEEEEEcCCcceeEeC
Q 017894 22 YIVTVGIGTPKRKFSLIFDTGSDLTWTQC 50 (364)
Q Consensus 22 y~~~i~iGtP~q~~~~~~DTgS~~~wv~~ 50 (364)
=++ +.|| +|.+.+++|||..++-+.-
T Consensus 15 P~v-ikI~--Gq~~eaLLDTGAD~TVi~~ 40 (116)
T 2hah_A 15 EIL-IFVN--GYPIKFLLDTGADITVLNR 40 (116)
T ss_dssp EEE-EEET--TEEEEEEECTTCSSCEEEG
T ss_pred CEE-EEEC--CEEEEEEecCCCCcEEEcc
Confidence 356 9999 8999999999999999954
No 47
>3sqf_A Protease; folded monomer, retropepsin, D-type retrovirus; 1.63A {Mason-pfizer monkey virus} SCOP: b.50.1.1 PDB: 1nso_A
Probab=72.22 E-value=3.8 Score=30.41 Aligned_cols=30 Identities=20% Similarity=0.316 Sum_probs=25.6
Q ss_pred EEEEEEeCCCCcEEEEEEEcCCcceeEeCCCc
Q 017894 22 YIVTVGIGTPKRKFSLIFDTGSDLTWTQCKPC 53 (364)
Q Consensus 22 y~~~i~iGtP~q~~~~~~DTgS~~~wv~~~~c 53 (364)
=.+.+.|| +|.+..++|||..++-+...+.
T Consensus 10 P~vti~I~--Gq~~eaLLDTGADdTVi~~~~l 39 (114)
T 3sqf_A 10 PSLTLWLD--DKMFTGLINTGADVTIIKLEDW 39 (114)
T ss_dssp CEEEEEET--TEEEEEEECTTCSSCEEEGGGS
T ss_pred CeEEEEEC--CEEEEEEEccCCCceEEecccC
Confidence 46789999 9999999999999999965543
No 48
>3slz_A GAG-Pro-POL polyprotein; beta sheet and dimer, protease, peptide inhibitor, TL-3 PEPS virus, hydrolase-hydrolase inhibitor complex; HET: 3TL; 1.40A {Dg-75 murine leukemia virus} PDB: 3nr6_A* 3sm1_A* 3sm2_A* 4exh_A*
Probab=69.22 E-value=4.6 Score=30.91 Aligned_cols=29 Identities=17% Similarity=0.319 Sum_probs=24.9
Q ss_pred cEEEEEEeCCCCcEEEEEEEcCCcceeEeCC
Q 017894 21 NYIVTVGIGTPKRKFSLIFDTGSDLTWTQCK 51 (364)
Q Consensus 21 ~y~~~i~iGtP~q~~~~~~DTgS~~~wv~~~ 51 (364)
.-++.+.|+ +|.+.+++|||.+++-+...
T Consensus 22 RP~v~i~I~--G~~~~~LlDTGAd~tVl~~~ 50 (132)
T 3slz_A 22 EPRITLKVG--GQPVTFLVDTGAQHSVLTQN 50 (132)
T ss_dssp SSEEEEEET--TEEEEEEECTTCSSCEECSC
T ss_pred CCEEEEEEC--CEEEEEEEeCCCCeEEEccc
Confidence 346889999 89999999999999999543
No 49
>3ka2_A [L-Ala51;Gly51']HIV-1 protease; beta-barrel, hydrolase-hydrolase inhibitor complex; HET: YCM 2NC; 1.40A {Synthetic} PDB: 3fsm_A* 3gi0_A* 2o40_A* 3hzc_A* 3hlo_A* 3iaw_A* 3nxe_A* 3nxn_A* 4epj_A 4ep2_A 4ep3_A 4eq0_A 4eqj_A 1hvc_A* 1g6l_A 2whh_A* 1lv1_A* 3dox_A 3kt5_A 3kt2_A ...
Probab=61.11 E-value=7.5 Score=32.10 Aligned_cols=27 Identities=33% Similarity=0.380 Sum_probs=23.9
Q ss_pred EEEEEEeCCCCcEEEEEEEcCCcceeEeC
Q 017894 22 YIVTVGIGTPKRKFSLIFDTGSDLTWTQC 50 (364)
Q Consensus 22 y~~~i~iGtP~q~~~~~~DTgS~~~wv~~ 50 (364)
-.+.+.|| +|.+.+++|||..++-+..
T Consensus 9 P~vtv~I~--Gq~~e~LLDTGAD~TVl~~ 35 (203)
T 3ka2_A 9 PLVTIRIG--GQLKEALLDTGADDTVIEE 35 (203)
T ss_dssp CEEEEEET--TEEEEEEECTTCSSCEECS
T ss_pred CeEEEEEC--CEEEEEEEecCCCceEEec
Confidence 36789999 9999999999999999953
No 50
>2rsp_A RSV protease; hydrolase(aspartyl proteinase); 2.00A {Rous sarcoma virus} SCOP: b.50.1.1 PDB: 1mvp_A 1bai_A*
Probab=54.85 E-value=9.7 Score=28.73 Aligned_cols=23 Identities=17% Similarity=0.268 Sum_probs=19.7
Q ss_pred eCCCCcEEEEEEEcCCcceeEeCCC
Q 017894 28 IGTPKRKFSLIFDTGSDLTWTQCKP 52 (364)
Q Consensus 28 iGtP~q~~~~~~DTgS~~~wv~~~~ 52 (364)
|| +|.+..++|||..++-+....
T Consensus 27 i~--gq~~eaLLDTGAD~TVl~~~~ 49 (124)
T 2rsp_A 27 QR--SVYITALLDSGADITIISEED 49 (124)
T ss_dssp CS--EEEEEEEECTTCSSCEEETTT
T ss_pred CC--CEEEEEEecCCCCcEEEeccc
Confidence 66 788899999999999997554
No 51
>1lya_A Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_A* 1lyw_A*
Probab=44.52 E-value=22 Score=25.30 Aligned_cols=17 Identities=18% Similarity=0.354 Sum_probs=14.8
Q ss_pred EEEecCCcceecChhHH
Q 017894 239 TIIDSGTVITRLPPHAY 255 (364)
Q Consensus 239 aiiDtgt~~~~lp~~~~ 255 (364)
++||||+..+++|....
T Consensus 30 v~~DTGSs~lWv~~~~C 46 (97)
T 1lya_A 30 VVFDTGSSNLWVPSIHC 46 (97)
T ss_dssp EEEETTCCCEEEEBTTC
T ss_pred EEEeCCCCceEEeEcCc
Confidence 99999999999997643
No 52
>1bxo_A Protein (penicillopepsin); hydrolase, phosphonate inhibitors, macrocycle; HET: MAN PP7; 0.95A {Penicillium janthinellum} SCOP: b.50.1.2 PDB: 1apu_E* 1apv_E* 1apw_E* 1apt_E* 1bxq_A* 1ppk_E* 1ppl_E* 1ppm_E* 2wea_A* 2web_A* 2wec_A* 2wed_A* 3app_A
Probab=42.50 E-value=25 Score=31.00 Aligned_cols=43 Identities=19% Similarity=0.248 Sum_probs=29.5
Q ss_pred CceEeecccCCCCCcceEEEeeEEEECCEEeeeccccCCCCCEEEecCCcceecChhHHH
Q 017894 197 SVKFTPLSSAFQGSSFYGLDMTGISVGGEKLPIATTVFSTPGTIIDSGTVITRLPPHAYT 256 (364)
Q Consensus 197 ~l~~~p~~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~~~aiiDtgt~~~~lp~~~~~ 256 (364)
.+...|+.. ...|.++ |+|+.+++. ++||||++.+++|.....
T Consensus 5 ~v~~~~~~~----~~~Y~~~---i~iG~Q~~~----------v~~DTGSs~lWv~~~~C~ 47 (323)
T 1bxo_A 5 VATNTPTAN----DEEYITP---VTIGGTTLN----------LNFDTGSADLWVFSTELP 47 (323)
T ss_dssp EEEEEECGG----GSCEEEE---EEETTEEEE----------EEEETTCCCEEECBTTSC
T ss_pred ceeeeecCC----CCEEEEE---EEECCEEEE----------EEEeCCCcceEEecCCCC
Confidence 444555544 4567665 678844433 999999999999986543
No 53
>2hs1_A HIV-1 protease; ultra-high resolution active site surface binding site, HYDR; HET: 017; 0.84A {Human immunodeficiency virus 1} PDB: 3nu4_A* 3tl9_A* 3tkw_A* 3tkg_A* 3ndu_A* 3ndt_A* 3k4v_A* 3a2o_A* 1fgc_C* 2a1e_A* 2aod_A* 2aoi_A* 2aoj_A* 2hb3_A* 2ien_A* 1sdt_A* 2z4o_A* 2zye_A* 2nmw_A* 3b7v_A* ...
Probab=42.25 E-value=17 Score=26.22 Aligned_cols=30 Identities=20% Similarity=0.379 Sum_probs=23.8
Q ss_pred eEEEeeEEEECCEEeeeccccCCCCCEEEecCCcceecCh
Q 017894 213 YGLDMTGISVGGEKLPIATTVFSTPGTIIDSGTVITRLPP 252 (364)
Q Consensus 213 w~v~l~~i~v~~~~~~~~~~~~~~~~aiiDtgt~~~~lp~ 252 (364)
|+=.+..++++|+... +++|||+-.+.+..
T Consensus 6 ~~rP~vtvkI~Gq~~e----------aLLDTGAD~TVl~~ 35 (99)
T 2hs1_A 6 WKRPLVTIKIGGQLKE----------ALLDTGADDTIIEE 35 (99)
T ss_dssp SSCCEEEEEETTEEEE----------EEECTTCSSEEESC
T ss_pred cCCCEEEEEECCEEEE----------EEeccCCCcEEEec
Confidence 4445566889998765 99999999988875
No 54
>1fmb_A EIAV protease; hydrolase (acid proteinase), RNA-directed DNA polymerase, AS protease, endonuclease, polyprotein; HET: HYB; 1.80A {Equine infectious anemia virus} SCOP: b.50.1.1 PDB: 2fmb_A*
Probab=41.04 E-value=17 Score=26.42 Aligned_cols=34 Identities=18% Similarity=0.233 Sum_probs=26.1
Q ss_pred eEEEeeEEEECCEEeeeccccCCCCCEEEecCCcceecChhHHH
Q 017894 213 YGLDMTGISVGGEKLPIATTVFSTPGTIIDSGTVITRLPPHAYT 256 (364)
Q Consensus 213 w~v~l~~i~v~~~~~~~~~~~~~~~~aiiDtgt~~~~lp~~~~~ 256 (364)
|+=.+..++++|+... +++|||+-.+.+......
T Consensus 6 ~~RP~v~v~I~Gq~~e----------~LLDTGAD~TVl~~~~w~ 39 (104)
T 1fmb_A 6 EKRPTTIVLINDTPLN----------VLLDTGADTSVLTTAHYN 39 (104)
T ss_dssp SSCCEEEEEETTEEEE----------EEECTTCSSCEEEHHHHH
T ss_pred cCCCEEEEEECCEEEE----------EEeccCCCcEEEccccCc
Confidence 4444556889998654 999999999999876653
No 55
>1izd_A Aspartic proteinase; sugar binding, acid protease, hydrolase; HET: MAN; 1.90A {Aspergillus oryzae} SCOP: b.50.1.2 PDB: 1ize_A*
Probab=40.34 E-value=29 Score=30.65 Aligned_cols=43 Identities=23% Similarity=0.256 Sum_probs=29.1
Q ss_pred CceEeecccCCCCCcceEEEeeEEEECCEEeeeccccCCCCCEEEecCCcceecChhHHH
Q 017894 197 SVKFTPLSSAFQGSSFYGLDMTGISVGGEKLPIATTVFSTPGTIIDSGTVITRLPPHAYT 256 (364)
Q Consensus 197 ~l~~~p~~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~~~aiiDtgt~~~~lp~~~~~ 256 (364)
.+...|+.. ...|.++ |+|+.+++. ++||||++.+++|.....
T Consensus 5 ~v~~~~~~~----~~~Y~~~---i~iG~q~~~----------v~~DTGSs~lWv~~~~C~ 47 (323)
T 1izd_A 5 SVTTNPTSN----DEEYITQ---VTVGDDTLG----------LDFDTGSADLWVFSSQTP 47 (323)
T ss_dssp EEEEEECGG----GCCEEEE---EEETTEEEE----------EEEETTCCCEEECBTTSC
T ss_pred ceeeeEcCC----CCEEEEE---EEECCEEEE----------EEEcCCCcceEEecCCCC
Confidence 344455544 4567665 677844332 999999999999986543
No 56
>3ec0_A Protease; HIV-2, inhibitor, hydrolase; HET: GRL; 1.18A {Human immunodeficiency virus type 2} SCOP: b.50.1.1 PDB: 1hii_A* 1hsi_A 1hsh_A* 1idb_A* 1jld_A* 2mip_A 1ida_A* 3ebz_A* 3ecg_A* 3s45_A* 4upj_A* 1ivq_A* 1ivp_A 2hpf_A 3upj_A* 2hpe_A* 5upj_A* 6upj_A* 1sip_A 1tcw_A* ...
Probab=39.07 E-value=20 Score=25.84 Aligned_cols=29 Identities=10% Similarity=0.282 Sum_probs=23.1
Q ss_pred ceEEEeeEEEECCEEeeeccccCCCCCEEEecCCcceec
Q 017894 212 FYGLDMTGISVGGEKLPIATTVFSTPGTIIDSGTVITRL 250 (364)
Q Consensus 212 ~w~v~l~~i~v~~~~~~~~~~~~~~~~aiiDtgt~~~~l 250 (364)
.|+=.+..++++|+.+. +++|||+.-+.+
T Consensus 5 l~~RP~vti~I~Gq~~e----------~LLDTGAD~TVl 33 (99)
T 3ec0_A 5 LWKRPVVTAYIEGQPVE----------VLLDTGADDSIV 33 (99)
T ss_dssp SSSCCEEEEEETTEEEE----------EEECTTCSSCEE
T ss_pred cccCCeEEEEECCEEEE----------EEEecCCCceEE
Confidence 35555667899999765 999999998887
No 57
>2hah_A Protease, retropepsin; retroviral, aspartyl, hydrolase-hydrolase complex; HET: 3TL; 1.70A {Feline immunodeficiency virus} PDB: 3ogp_A* 3ogq_A* 2fiv_A* 6fiv_A* 3fiv_A* 5fiv_A* 4fiv_A* 1fiv_A* 1b11_A*
Probab=38.44 E-value=23 Score=26.34 Aligned_cols=30 Identities=27% Similarity=0.287 Sum_probs=24.9
Q ss_pred ceEEEeeEEEECCEEeeeccccCCCCCEEEecCCcceecCh
Q 017894 212 FYGLDMTGISVGGEKLPIATTVFSTPGTIIDSGTVITRLPP 252 (364)
Q Consensus 212 ~w~v~l~~i~v~~~~~~~~~~~~~~~~aiiDtgt~~~~lp~ 252 (364)
.|+=.+. ++++|+.+. +++|||+-.+.+..
T Consensus 11 l~~rP~v-ikI~Gq~~e----------aLLDTGAD~TVi~~ 40 (116)
T 2hah_A 11 EKRPEIL-IFVNGYPIK----------FLLDTGADITVLNR 40 (116)
T ss_dssp SSCCEEE-EEETTEEEE----------EEECTTCSSCEEEG
T ss_pred ccCCCEE-EEECCEEEE----------EEecCCCCcEEEcc
Confidence 5666777 999999764 99999999988875
No 58
>1ibq_A Aspergillopepsin; aspartic proteinase, hydrolase; HET: MAN; 2.14A {Aspergillus phoenicis} SCOP: b.50.1.2
Probab=38.44 E-value=29 Score=30.68 Aligned_cols=42 Identities=19% Similarity=0.192 Sum_probs=28.4
Q ss_pred ceEeecccCCCCCcceEEEeeEEEECCEEeeeccccCCCCCEEEecCCcceecChhHHH
Q 017894 198 VKFTPLSSAFQGSSFYGLDMTGISVGGEKLPIATTVFSTPGTIIDSGTVITRLPPHAYT 256 (364)
Q Consensus 198 l~~~p~~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~~~aiiDtgt~~~~lp~~~~~ 256 (364)
+...|+.. ...|.++ |+|+.+++. ++||||++.+++|.....
T Consensus 5 v~~~~~~~----~~~Y~~~---i~iG~Q~~~----------v~~DTGSs~lWv~~~~C~ 46 (325)
T 1ibq_A 5 AVTTPQNN----DEEYLTP---VTVGKSTLH----------LDFDTGSADLWVFSDELP 46 (325)
T ss_dssp EEEEECTT----TSCEEEE---EEEBTEEEE----------EEEETTCCCEEEECTTSC
T ss_pred EEeEEcCC----CCEEEEE---EEECCEEEE----------EEEeCCCccceEeeCCCC
Confidence 34455443 5567666 667744433 999999999999976543
No 59
>1lya_B Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_B* 1lyw_B*
Probab=38.37 E-value=26 Score=29.32 Aligned_cols=34 Identities=24% Similarity=0.298 Sum_probs=24.8
Q ss_pred CCccEEEE---EEeCCC----CcEEEEEEEcCCcceeEeCC
Q 017894 18 GSGNYIVT---VGIGTP----KRKFSLIFDTGSDLTWTQCK 51 (364)
Q Consensus 18 ~~~~y~~~---i~iGtP----~q~~~~~~DTgS~~~wv~~~ 51 (364)
...+|.+. |.||.- .....+++|||++.+++|..
T Consensus 97 ~~~~~~v~l~~i~v~~~~~~~~~~~~aiiDSGTt~~~lP~~ 137 (241)
T 1lya_B 97 RKAYWQVHLDQVEVASGLTLCKEGCEAIVDTGTSLMVGPVD 137 (241)
T ss_dssp SBTTBEEEEEEEEETTSCEESTTCEEEEECTTCSSEEECHH
T ss_pred cccEEEEEEeEEEECCeeEeccCCCEEEEECCCccccCCHH
Confidence 34677664 568752 24568999999999999765
No 60
>1b5f_A Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2
Probab=36.14 E-value=24 Score=29.68 Aligned_cols=33 Identities=18% Similarity=0.118 Sum_probs=24.3
Q ss_pred CccEEEE---EEeCCC-----CcEEEEEEEcCCcceeEeCC
Q 017894 19 SGNYIVT---VGIGTP-----KRKFSLIFDTGSDLTWTQCK 51 (364)
Q Consensus 19 ~~~y~~~---i~iGtP-----~q~~~~~~DTgS~~~wv~~~ 51 (364)
.++|.+. |.||.- .....++||||++.++++..
T Consensus 187 ~~~~~v~l~~i~v~~~~~~~~~~~~~aiiDTGTt~~~lP~~ 227 (239)
T 1b5f_A 187 QYYWQFGIGDVLIGDKSTGFCAPGCQAFADSGTSLLSGPTA 227 (239)
T ss_dssp ETTEEEEECCEEETTEECCTTTTCEEEEECTTCSSEEECHH
T ss_pred CCeEEEEeeEEEECCEEecccCCCCEEEEecCcchhhCCHH
Confidence 4677776 577751 34578999999999999653
No 61
>3ka2_A [L-Ala51;Gly51']HIV-1 protease; beta-barrel, hydrolase-hydrolase inhibitor complex; HET: YCM 2NC; 1.40A {Synthetic} PDB: 3fsm_A* 3gi0_A* 2o40_A* 3hzc_A* 3hlo_A* 3iaw_A* 3nxe_A* 3nxn_A* 4epj_A 4ep2_A 4ep3_A 4eq0_A 4eqj_A 1hvc_A* 1g6l_A 2whh_A* 1lv1_A* 3dox_A 3kt5_A 3kt2_A ...
Probab=35.72 E-value=33 Score=28.19 Aligned_cols=28 Identities=32% Similarity=0.342 Sum_probs=24.0
Q ss_pred EEEEEEeCCCCcEEEEEEEcCCcceeEeCC
Q 017894 22 YIVTVGIGTPKRKFSLIFDTGSDLTWTQCK 51 (364)
Q Consensus 22 y~~~i~iGtP~q~~~~~~DTgS~~~wv~~~ 51 (364)
=.+.+.|| +|.+..++|||..++-+...
T Consensus 113 P~~~iki~--Gq~~e~LlDTGAD~TVl~~~ 140 (203)
T 3ka2_A 113 PLVTIRIG--GQLKEALLDTGADDTVIEEL 140 (203)
T ss_dssp CEEEEEET--TEEEEEEECTTCSSCEECSC
T ss_pred CcEEEEEC--CEEEeeeecccCCceeeecc
Confidence 36788999 89999999999999999533
No 62
>3slz_A GAG-Pro-POL polyprotein; beta sheet and dimer, protease, peptide inhibitor, TL-3 PEPS virus, hydrolase-hydrolase inhibitor complex; HET: 3TL; 1.40A {Dg-75 murine leukemia virus} PDB: 3nr6_A* 3sm1_A* 3sm2_A* 4exh_A*
Probab=35.06 E-value=37 Score=25.84 Aligned_cols=26 Identities=23% Similarity=0.498 Sum_probs=21.2
Q ss_pred eEEEECCEEeeeccccCCCCCEEEecCCcceecChh
Q 017894 218 TGISVGGEKLPIATTVFSTPGTIIDSGTVITRLPPH 253 (364)
Q Consensus 218 ~~i~v~~~~~~~~~~~~~~~~aiiDtgt~~~~lp~~ 253 (364)
..++++|+.+. +++|||+..+.|+..
T Consensus 25 v~i~I~G~~~~----------~LlDTGAd~tVl~~~ 50 (132)
T 3slz_A 25 ITLKVGGQPVT----------FLVDTGAQHSVLTQN 50 (132)
T ss_dssp EEEEETTEEEE----------EEECTTCSSCEECSC
T ss_pred EEEEECCEEEE----------EEEeCCCCeEEEccc
Confidence 34788988765 999999999999763
No 63
>1mpp_A Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomucor pusillus} SCOP: b.50.1.2 PDB: 2asi_A* 2rmp_A*
Probab=30.85 E-value=61 Score=28.93 Aligned_cols=44 Identities=25% Similarity=0.355 Sum_probs=29.8
Q ss_pred CCceEeecccCCCCCcceEEEeeEEEEC--CEEeeeccccCCCCCEEEecCCcceecChhH
Q 017894 196 KSVKFTPLSSAFQGSSFYGLDMTGISVG--GEKLPIATTVFSTPGTIIDSGTVITRLPPHA 254 (364)
Q Consensus 196 ~~l~~~p~~~~~~~~~~w~v~l~~i~v~--~~~~~~~~~~~~~~~aiiDtgt~~~~lp~~~ 254 (364)
|.+...|+.... ...|.++ |+|+ .+++. ++||||++.+++|...
T Consensus 5 g~~~~~~l~~~~--~~~Y~~~---i~iGtP~q~~~----------v~~DTGSs~~Wv~~~~ 50 (361)
T 1mpp_A 5 GSVDTPGLYDFD--LEEYAIP---VSIGTPGQDFY----------LLFDTGSSDTWVPHKG 50 (361)
T ss_dssp CCEEEEEEEETT--TTEEEEE---EEETTTTEEEE----------EEEETTCCCCEEEBTT
T ss_pred CccceEEeecCC--CCEEEEE---EEECCCCcEEE----------EEEcCCCCCeEECCCC
Confidence 456667776522 3467665 6677 33332 9999999999999763
No 64
>2apr_A Rhizopuspepsin; hydrolase (aspartic proteinase); 1.80A {Rhizopus microsporus var} SCOP: b.50.1.2 PDB: 3apr_E* 4apr_E* 5apr_E* 6apr_E* 1uh9_A 1uh8_A 1uh7_A
Probab=30.17 E-value=59 Score=28.58 Aligned_cols=32 Identities=19% Similarity=0.273 Sum_probs=23.3
Q ss_pred CcceEEEeeEEEEC--CEEeeeccccCCCCCEEEecCCcceecChhH
Q 017894 210 SSFYGLDMTGISVG--GEKLPIATTVFSTPGTIIDSGTVITRLPPHA 254 (364)
Q Consensus 210 ~~~w~v~l~~i~v~--~~~~~~~~~~~~~~~aiiDtgt~~~~lp~~~ 254 (364)
...|.++ |+|+ .+++. ++||||++.+++|...
T Consensus 14 ~~~Y~~~---i~iGTP~q~~~----------v~~DTGSs~lWv~~~~ 47 (325)
T 2apr_A 14 DIEYYGQ---VTIGTPGKKFN----------LDFDTGSSDLWIASTL 47 (325)
T ss_dssp TTEEEEE---EEETTTTEEEE----------EEEETTCCCCEEEBTT
T ss_pred CCEEEEE---EEECCCCeEEE----------EEEcCCCCCEEEccCC
Confidence 4567665 6677 44332 9999999999998754
No 65
>1oew_A Endothiapepsin; hydrolase, aspartic proteinase mechanism, atomic resolution, succinimide, anisotropic refinement; HET: SUI; 0.9A {Cryphonectria parasitica} SCOP: b.50.1.2 PDB: 1gkt_A* 1gvt_A* 1gvv_A* 1gvw_A* 1gvx_A* 1gvu_A* 1oex_A* 2jji_A* 2jjj_A* 2vs2_A* 3uri_A* 3urj_A* 3url_A* 3pww_A* 1e80_E* 1e81_E* 1e82_E* 1e5o_E* 1eed_P* 1epl_E* ...
Probab=29.01 E-value=60 Score=28.58 Aligned_cols=33 Identities=15% Similarity=0.176 Sum_probs=23.8
Q ss_pred CcceEEEeeEEEEC--CEEeeeccccCCCCCEEEecCCcceecChhHH
Q 017894 210 SSFYGLDMTGISVG--GEKLPIATTVFSTPGTIIDSGTVITRLPPHAY 255 (364)
Q Consensus 210 ~~~w~v~l~~i~v~--~~~~~~~~~~~~~~~aiiDtgt~~~~lp~~~~ 255 (364)
...|.++ |.|+ .+++. ++||||++.+++|....
T Consensus 14 ~~~Y~~~---i~iGTP~Q~~~----------v~~DTGSs~lWv~~~~C 48 (329)
T 1oew_A 14 DDAYITP---VQIGTPAQTLN----------LDFDTGSSDLWVFSSET 48 (329)
T ss_dssp CCCEEEE---EEETTTTEEEE----------EEEETTCCCEEECBTTS
T ss_pred CCEEEEE---EEECCCCeEEE----------EEECCCCCCeEEecCCC
Confidence 4567665 6777 34332 99999999999997643
No 66
>3c9x_A Trichoderma reesei aspartic protease; aspartic proteinase, aspartyl protease, hydrolase; 1.70A {Trichoderma reesei} PDB: 3c9y_A* 3emy_A*
Probab=28.07 E-value=64 Score=28.40 Aligned_cols=34 Identities=24% Similarity=0.269 Sum_probs=24.3
Q ss_pred CcceEEEeeEEEEC--CEEeeeccccCCCCCEEEecCCcceecChhHHH
Q 017894 210 SSFYGLDMTGISVG--GEKLPIATTVFSTPGTIIDSGTVITRLPPHAYT 256 (364)
Q Consensus 210 ~~~w~v~l~~i~v~--~~~~~~~~~~~~~~~aiiDtgt~~~~lp~~~~~ 256 (364)
...|.++ |+|+ .+++. ++||||++.+++|.....
T Consensus 14 ~~~Y~~~---i~iGTP~Q~~~----------v~~DTGSs~lWv~~~~C~ 49 (329)
T 3c9x_A 14 DSEYITS---VSIGTPAQVLP----------LDFDTGSSDLWVFSSETP 49 (329)
T ss_dssp CCCEEEE---EEETTTTEEEE----------EEEETTCCCEEECBTTSC
T ss_pred CCEEEEE---EEECCCCeEEE----------EEEcCCCCCeEEecCCCC
Confidence 4567665 6777 33332 999999999999976543
No 67
>3cms_A Chymosin B; hydrolase, acid proteinase; 2.00A {Bos taurus} SCOP: b.50.1.2 PDB: 4cms_A 1czi_E* 1cms_A
Probab=27.59 E-value=72 Score=27.96 Aligned_cols=45 Identities=24% Similarity=0.305 Sum_probs=27.5
Q ss_pred ceEeecccCCCCCcceEEEeeEEEECCEEeeeccccCCCCCEEEecCCcceecChhHH
Q 017894 198 VKFTPLSSAFQGSSFYGLDMTGISVGGEKLPIATTVFSTPGTIIDSGTVITRLPPHAY 255 (364)
Q Consensus 198 l~~~p~~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~~~aiiDtgt~~~~lp~~~~ 255 (364)
....|+.... ...|.++ |+|+. ++..+ .++||||++.+++|....
T Consensus 3 ~~~~~l~n~~--~~~Y~~~---i~iGt-----P~q~~---~v~~DTGSs~~Wv~~~~C 47 (323)
T 3cms_A 3 VASVPLTNYL--DSQYFGK---IYLGT-----PPQEF---TVLFDTGSSDFWVPSIYC 47 (323)
T ss_dssp CEEEEEEEET--TTEEEEE---EEETT-----TTEEE---EEEEETTCCCEEEEBTTC
T ss_pred cceeeeEecc--CCEEEEE---EEECC-----CCeEE---EEEEeCCccceEEcCCCC
Confidence 3445554421 3456665 66763 22222 299999999999997643
No 68
>2x0b_A Renin; hydrolase-hormone complex, hydrolase hormone complex, vasoconstrictor, glycoprotein, hypertension, serpins; 4.33A {Homo sapiens}
Probab=24.43 E-value=58 Score=29.59 Aligned_cols=34 Identities=18% Similarity=0.338 Sum_probs=25.4
Q ss_pred CCccEEEE---EEeCCC----CcEEEEEEEcCCcceeEeCC
Q 017894 18 GSGNYIVT---VGIGTP----KRKFSLIFDTGSDLTWTQCK 51 (364)
Q Consensus 18 ~~~~y~~~---i~iGtP----~q~~~~~~DTgS~~~wv~~~ 51 (364)
..++|.+. |.||.- .....+++|||++.+++|..
T Consensus 240 ~~~~w~v~l~~i~v~~~~~~~~~~~~aiiDTGTs~~~lP~~ 280 (383)
T 2x0b_A 240 KTGVWQIQMKGVSVGSSTLLCEDGCLALVDTGASYISGSTS 280 (383)
T ss_dssp STTSCEEEECEEEESSCCCBSTTCEEEEECTTCSSEEECHH
T ss_pred CCceEEEEEeEEEeCCceEEcCCCcEEEEcCCCceEEcCHH
Confidence 34677665 578753 24578999999999999765
No 69
>3aup_A SBG7S, BG, basic 7S globulin; pepsin-like fold, plant protein; 1.91A {Glycine max}
Probab=22.97 E-value=1e+02 Score=28.06 Aligned_cols=42 Identities=5% Similarity=-0.029 Sum_probs=26.4
Q ss_pred EeecccCCCCCcceEEEeeEEEECCEEeeeccccCCCCCEEEecCCcceecChh
Q 017894 200 FTPLSSAFQGSSFYGLDMTGISVGGEKLPIATTVFSTPGTIIDSGTVITRLPPH 253 (364)
Q Consensus 200 ~~p~~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~~~aiiDtgt~~~~lp~~ 253 (364)
.+|+..+.. ...|.++ |.|+. ++..+ .++||||++.+++|..
T Consensus 11 ~~pl~~~~~-~~~Y~~~---i~iGT-----P~Q~~---~v~~DTGSs~lWv~~~ 52 (403)
T 3aup_A 11 VLPVQNDGS-TGLHWAN---LQKRT-----PLMQV---PVLVDLNGNHLWVNCE 52 (403)
T ss_dssp EEEEEECTT-TCCEEEE---EEETT-----TTEEE---EEEEETTCSSEEEECS
T ss_pred EEeeecCCC-CceEEEE---EECCC-----CCcee---EEEEECCCCceeECCC
Confidence 356653321 4567665 56762 22222 2999999999999865
No 70
>1qdm_A Prophytepsin; aspartic proteinases, saposin-like domain, zymogen structure, hydrolase; 2.30A {Hordeum vulgare} SCOP: a.64.1.2 b.50.1.2
Probab=22.33 E-value=54 Score=30.88 Aligned_cols=33 Identities=21% Similarity=0.225 Sum_probs=24.6
Q ss_pred CccEEEE---EEeCC-----CCcEEEEEEEcCCcceeEeCC
Q 017894 19 SGNYIVT---VGIGT-----PKRKFSLIFDTGSDLTWTQCK 51 (364)
Q Consensus 19 ~~~y~~~---i~iGt-----P~q~~~~~~DTgS~~~wv~~~ 51 (364)
.++|.+. |.||. +.....+++|||++.+++|..
T Consensus 230 ~~~w~v~l~~i~v~g~~~~~~~~~~~aiiDTGTs~~~lP~~ 270 (478)
T 1qdm_A 230 KGYWQFDMGDVLVGGKSTGFCAGGCAAIADSGTSLLAGPTA 270 (478)
T ss_dssp ETTEEEEECCEEETTEECSTTTTCEEEEECSSCCSEEECHH
T ss_pred CCeEEEEEeEEEECCEEEeecCCCceEEEcCCCCceeCCHH
Confidence 4677766 57774 234678999999999999754
No 71
>4aa9_A Chymosin; hydrolase, aspartic peptidase, rennet; HET: NAG; 1.60A {Camelus dromedarius} PDB: 4aa8_A 1czi_E* 1cms_A 4cms_A 3cms_A
Probab=22.20 E-value=72 Score=27.81 Aligned_cols=35 Identities=20% Similarity=0.197 Sum_probs=24.9
Q ss_pred CCccEEEE---EEeCCC----CcEEEEEEEcCCcceeEeCCC
Q 017894 18 GSGNYIVT---VGIGTP----KRKFSLIFDTGSDLTWTQCKP 52 (364)
Q Consensus 18 ~~~~y~~~---i~iGtP----~q~~~~~~DTgS~~~wv~~~~ 52 (364)
...+|.+. |.||.- +....++||||++.++++...
T Consensus 184 ~~~~w~v~l~~i~v~~~~~~~~~~~~~iiDsGtt~~~lP~~~ 225 (320)
T 4aa9_A 184 LQQYWQFTVDSVTINGVAVACVGGCQAILDTGTSVLFGPSSD 225 (320)
T ss_dssp SBTTBEEEECEEEETTEEEESTTCEEEEECTTCSSEEEEHHH
T ss_pred cCCceEEEEeEEEECCEEeccCCCcEEEEECCCCcEECCHHH
Confidence 34567665 567741 245689999999999997653
No 72
>1htr_B Gastricsin; aspartyl protease; 1.62A {Homo sapiens} SCOP: b.50.1.2 PDB: 1avf_A
Probab=21.85 E-value=74 Score=27.93 Aligned_cols=34 Identities=21% Similarity=0.160 Sum_probs=25.0
Q ss_pred CccEEEE---EEeCCC-----CcEEEEEEEcCCcceeEeCCC
Q 017894 19 SGNYIVT---VGIGTP-----KRKFSLIFDTGSDLTWTQCKP 52 (364)
Q Consensus 19 ~~~y~~~---i~iGtP-----~q~~~~~~DTgS~~~wv~~~~ 52 (364)
..+|.+. |.||.- .....++||||++.++++...
T Consensus 188 ~~~~~v~l~~i~v~~~~~~~~~~~~~aiiDSGTt~~~lp~~~ 229 (329)
T 1htr_B 188 ELYWQIGIEEFLIGGQASGWCSEGCQAIVDTGTSLLTVPQQY 229 (329)
T ss_dssp SSSCEEEECEEEETTEECCTTTTCEEEEECTTCCSEEEEGGG
T ss_pred CceEEEEEeEEEECCceeeecCCCceEEEecCCccEECCHHH
Confidence 4577665 567741 345789999999999998764
No 73
>1dpj_A Proteinase A; proteinase A, hydrolase-hydrolase inhibitor COM; HET: BMA MAN NAG; 1.80A {Saccharomyces cerevisiae} SCOP: b.50.1.2 PDB: 1dp5_A* 1fmu_A* 1fmx_A* 1fq5_A* 1fq4_A* 1fq6_A* 1fq7_A* 1fq8_A* 2jxr_A* 1g0v_A*
Probab=21.60 E-value=71 Score=28.06 Aligned_cols=33 Identities=21% Similarity=0.341 Sum_probs=23.3
Q ss_pred CccEEEE---EEeCCC---CcEEEEEEEcCCcceeEeCC
Q 017894 19 SGNYIVT---VGIGTP---KRKFSLIFDTGSDLTWTQCK 51 (364)
Q Consensus 19 ~~~y~~~---i~iGtP---~q~~~~~~DTgS~~~wv~~~ 51 (364)
..+|.+. |.||.- .....++||||++.++++..
T Consensus 191 ~~~~~v~l~~i~v~~~~~~~~~~~aiiDSGTt~~~lP~~ 229 (329)
T 1dpj_A 191 KAYWEVKFEGIGLGDEYAELESHGAAIDTGTSLITLPSG 229 (329)
T ss_dssp BTTBEEEEEEEEETTEEEECSSCEEEECTTCSCEEECHH
T ss_pred CceEEEEeeeEEECCeEecCCCccEEeeCCCCcEECCHH
Confidence 4567665 567741 13357999999999999765
No 74
>3k1w_A Renin; protease, alternative splicing, aspartyl protease, cleavage on PAIR of basic residues, disease mutation, disulfide bond, glycoprotein; HET: BFX NDG HSQ; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 3d91_A* 3g70_A* 3g6z_A* 3own_A* 2iko_A* 1bbs_A* 1rne_A* 2bkt_A* 2bks_A* 2iku_A* 2il2_A* 2ren_A* 2v0z_C* 2v10_C* 2v11_C* 2v12_C* 2v13_A* 2v16_C* 3g72_A* 3oot_A* ...
Probab=21.36 E-value=61 Score=28.60 Aligned_cols=35 Identities=17% Similarity=0.332 Sum_probs=25.1
Q ss_pred CCccEEEE---EEeCCC----CcEEEEEEEcCCcceeEeCCC
Q 017894 18 GSGNYIVT---VGIGTP----KRKFSLIFDTGSDLTWTQCKP 52 (364)
Q Consensus 18 ~~~~y~~~---i~iGtP----~q~~~~~~DTgS~~~wv~~~~ 52 (364)
...+|.+. |.||.. +....++||||++.+++|...
T Consensus 197 ~~~~w~v~l~~i~v~~~~~~~~~~~~~iiDsGtt~~~lP~~~ 238 (341)
T 3k1w_A 197 KTGVWQIQMKGVSVGSSTLLCEDGCLALVDTGASYISGSTSS 238 (341)
T ss_dssp STTSCEEEECCEEETTEEEECTTCEEEEECTTCSSEEECHHH
T ss_pred CCCEEEEEEeEEEECCEEeecCCCCEEEEECCCChhcCCHHH
Confidence 34667665 467742 245689999999999997653
No 75
>1miq_A Plasmepsin; aspartic proteinase zymogen, domain opening, hydrolase; 2.50A {Plasmodium vivax} SCOP: b.50.1.2 PDB: 1ls5_A*
Probab=21.14 E-value=62 Score=29.20 Aligned_cols=34 Identities=18% Similarity=0.242 Sum_probs=23.5
Q ss_pred CccEEEE--EEeCCCC-cEEEEEEEcCCcceeEeCCC
Q 017894 19 SGNYIVT--VGIGTPK-RKFSLIFDTGSDLTWTQCKP 52 (364)
Q Consensus 19 ~~~y~~~--i~iGtP~-q~~~~~~DTgS~~~wv~~~~ 52 (364)
.++|.+. |.||.-. ....++||||++.+++|...
T Consensus 238 ~~~w~v~l~i~v~g~~~~~~~aiiDSGTs~~~lP~~~ 274 (375)
T 1miq_A 238 DLYWQIDLDVHFGKQTMEKANVIVDSGTTTITAPSEF 274 (375)
T ss_dssp SSSSEEEEEEEETTEEEEEEEEEECTTBSSEEECHHH
T ss_pred CceEEEEEEEEECCEEcccceEEecCCCccEEcCHHH
Confidence 4566555 5676310 24689999999999997653
No 76
>1tzs_A Cathepsin E; hydrolase, aspartic protease, activation intermediate; 2.35A {Homo sapiens}
Probab=21.09 E-value=54 Score=29.23 Aligned_cols=33 Identities=18% Similarity=0.332 Sum_probs=24.3
Q ss_pred CccEEEE---EEeCCC----CcEEEEEEEcCCcceeEeCC
Q 017894 19 SGNYIVT---VGIGTP----KRKFSLIFDTGSDLTWTQCK 51 (364)
Q Consensus 19 ~~~y~~~---i~iGtP----~q~~~~~~DTgS~~~wv~~~ 51 (364)
.++|.+. |.||.- .....++||||++.++++..
T Consensus 200 ~~~~~v~l~~i~v~~~~~~~~~~~~aiiDSGTs~~~lP~~ 239 (351)
T 1tzs_A 200 QAYWQIALDNIQVGGTVMFCSEGCQAIVDTGTSLITGPSD 239 (351)
T ss_dssp ETTEEEEEEEEEETTEEEECTTCEEEEECTTCSSEEECHH
T ss_pred CceEEEEeCEEEECCceEEcCCCceEEeccCCcceeCCHH
Confidence 4677665 577741 24468999999999999765
No 77
>1wkr_A Polyporopepsin; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.30A {Irpex lacteus} SCOP: b.50.1.2
Probab=20.42 E-value=1.1e+02 Score=26.94 Aligned_cols=15 Identities=27% Similarity=0.426 Sum_probs=13.7
Q ss_pred EEEecCCcceecChh
Q 017894 239 TIIDSGTVITRLPPH 253 (364)
Q Consensus 239 aiiDtgt~~~~lp~~ 253 (364)
++||||++.+++|..
T Consensus 29 v~~DTGSs~lWv~~~ 43 (340)
T 1wkr_A 29 LLVDTGSSNTWLGAD 43 (340)
T ss_dssp EEEETTCCCCEECSS
T ss_pred EEEeCCChhheecCC
Confidence 999999999999863
Done!