BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 017895
         (364 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1WJ2|A Chain A, Solution Structure Of The C-Terminal Wrky Domain Of
           Atwrky4
 pdb|2LEX|A Chain A, Complex Of The C-Terminal Wrky Domain Of Atwrky4 And A
           W-Box Dna
          Length = 78

 Score = 65.9 bits (159), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 30/59 (50%), Positives = 36/59 (61%), Gaps = 3/59 (5%)

Query: 127 LDDGYCWRKYGQKDILGRNFPRGYYRCTHRHARGCLATKQVQRSDDDPSMFEVTYRGRH 185
           LDDGY WRKYGQK + G  +PR YY+CT     GC   K V+R+  DP     TY G+H
Sbjct: 17  LDDGYRWRKYGQKVVKGNPYPRSYYKCT---TPGCGVRKHVERAATDPKAVVTTYEGKH 72


>pdb|2AYD|A Chain A, Crystal Structure Of The C-Terminal Wrky Domainof Atwrky1,
           An Sa-Induced And Partially Npr1-Dependent Transcription
           Factor
          Length = 76

 Score = 63.9 bits (154), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 28/59 (47%), Positives = 37/59 (62%), Gaps = 3/59 (5%)

Query: 127 LDDGYCWRKYGQKDILGRNFPRGYYRCTHRHARGCLATKQVQRSDDDPSMFEVTYRGRH 185
           ++DGY WRKYGQK + G  +PR YYRC+   + GC   K V+RS  D  +   TY G+H
Sbjct: 14  VNDGYRWRKYGQKSVKGSPYPRSYYRCS---SPGCPVKKHVERSSHDTKLLITTYEGKH 69


>pdb|3T5O|A Chain A, Crystal Structure Of Human Complement Component C6
 pdb|4A5W|B Chain B, Crystal Structure Of C5b6
 pdb|4E0S|B Chain B, Crystal Structure Of C5b-6
          Length = 913

 Score = 33.5 bits (75), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 10/68 (14%)

Query: 273 FLDG-----MIDNNFMGGFSPTFISPATSESNYFSMSPCHMTNFGLGYDVQTPESDLKAE 327
           FL G     ++DN+F GG   T  S  TS  N + + P ++ N  +G++VQT E DLK +
Sbjct: 178 FLAGEPRGEVLDNSFTGGICKTVKSSRTS--NPYRV-PANLEN--VGFEVQTAEDDLKTD 232

Query: 328 IISTPTSV 335
                TS+
Sbjct: 233 FYKDLTSL 240


>pdb|4DH2|A Chain A, Crystal Structure Of Coh-olpc(cthe_0452)-doc435(cthe_0435)
           Complex: A Novel Type I Cohesin-dockerin Complex From
           Clostridium Thermocellum Attc 27405
 pdb|4DH2|C Chain C, Crystal Structure Of Coh-olpc(cthe_0452)-doc435(cthe_0435)
           Complex: A Novel Type I Cohesin-dockerin Complex From
           Clostridium Thermocellum Attc 27405
          Length = 170

 Score = 30.8 bits (68), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 8/63 (12%)

Query: 301 FSMSPCHMT---NFGLGYDVQTPESDLKAEIISTPTSVINSPFGDFDFSLTKEDLDPNFQ 357
           F   P H     N  L YD +  E  LK E    P S+I  P  +FD+++  +D +  F 
Sbjct: 38  FENVPSHGIQSFNLSLYYDSKAIEV-LKVE----PGSIITDPANNFDYNIVYKDSEIVFL 92

Query: 358 FDD 360
           FDD
Sbjct: 93  FDD 95


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.315    0.130    0.381 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,807,280
Number of Sequences: 62578
Number of extensions: 437968
Number of successful extensions: 979
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 973
Number of HSP's gapped (non-prelim): 10
length of query: 364
length of database: 14,973,337
effective HSP length: 100
effective length of query: 264
effective length of database: 8,715,537
effective search space: 2300901768
effective search space used: 2300901768
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 52 (24.6 bits)