Query 017895
Match_columns 364
No_of_seqs 196 out of 658
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 06:39:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017895.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017895hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ayd_A WRKY transcription fact 100.0 2.6E-31 8.9E-36 211.0 5.7 64 124-190 11-74 (76)
2 1wj2_A Probable WRKY transcrip 100.0 6.3E-31 2.2E-35 209.7 5.9 64 124-190 14-77 (78)
3 2rpr_A Flywch-type zinc finger 74.4 1.4 4.9E-05 34.3 2.1 50 126-188 23-72 (87)
4 1cz6_A Protein (androctonin); 39.9 9.1 0.00031 24.1 0.8 8 149-156 16-23 (26)
5 4afl_A P29ING4, inhibitor of g 27.2 1.5E+02 0.0051 23.4 6.3 47 13-59 26-79 (104)
6 1xiw_B T-cell surface glycopro 25.7 34 0.0012 26.3 2.1 50 128-188 17-76 (79)
7 1x9t_B N-terminl peptide of fi 25.4 27 0.00092 22.4 1.2 11 351-361 10-20 (26)
8 1nvp_D Transcription initiatio 19.1 1.1E+02 0.0039 25.2 4.1 37 18-58 9-46 (108)
9 1nh2_D Transcription initiatio 16.9 1.5E+02 0.0051 25.1 4.4 39 16-58 11-50 (121)
10 1wrd_A TOM1, target of MYB pro 15.7 2.3E+02 0.008 22.7 5.2 43 11-53 9-54 (103)
No 1
>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana}
Probab=99.97 E-value=2.6e-31 Score=211.03 Aligned_cols=64 Identities=44% Similarity=0.937 Sum_probs=60.8
Q ss_pred ccccCCCccccccCccccCCCCCCccceeeccCCCCCCcccccccccCCCCCeEEEEeeccCCCCCC
Q 017895 124 EGTLDDGYCWRKYGQKDILGRNFPRGYYRCTHRHARGCLATKQVQRSDDDPSMFEVTYRGRHKCSQN 190 (364)
Q Consensus 124 ~~~~dDGy~WRKYGQK~I~gs~~PRsYYRCt~~~~~gC~A~KqVQr~~~dp~~~~vtY~G~Htc~~~ 190 (364)
..+++|||.|||||||.|+|++|||+|||||+ +||+|+|+|||+++||.+++|||+|+|||..+
T Consensus 11 ~~~~~DGy~WRKYGQK~ikgs~~PRsYYrCt~---~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p 74 (76)
T 2ayd_A 11 FDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSS---PGCPVKKHVERSSHDTKLLITTYEGKHDHDMP 74 (76)
T ss_dssp SSCCCCSSCEEEEEEECCTTCSSCEEEEEECS---TTCCCEEEEEECSSSTTEEEEEEESCCSSCCC
T ss_pred CCcCCCCchhhhCcccccCCCCCceeEeEcCC---CCCCceeeEEEECCCCCEEEEEEccCcCCCCC
Confidence 46799999999999999999999999999997 79999999999999999999999999999764
No 2
>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A*
Probab=99.96 E-value=6.3e-31 Score=209.70 Aligned_cols=64 Identities=47% Similarity=0.936 Sum_probs=60.7
Q ss_pred ccccCCCccccccCccccCCCCCCccceeeccCCCCCCcccccccccCCCCCeEEEEeeccCCCCCC
Q 017895 124 EGTLDDGYCWRKYGQKDILGRNFPRGYYRCTHRHARGCLATKQVQRSDDDPSMFEVTYRGRHKCSQN 190 (364)
Q Consensus 124 ~~~~dDGy~WRKYGQK~I~gs~~PRsYYRCt~~~~~gC~A~KqVQr~~~dp~~~~vtY~G~Htc~~~ 190 (364)
..+++|||.|||||||.|+|++|||+|||||+ +||+|+|+|||+++||.+++|||+|+|||..+
T Consensus 14 ~~~~dDGy~WRKYGQK~ikgs~~PRsYYrCt~---~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p 77 (78)
T 1wj2_A 14 VDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTT---PGCGVRKHVERAATDPKAVVTTYEGKHNHDLP 77 (78)
T ss_dssp CCCCCSSSCBCCCEEECCTTCSSCEEEEEEEC---SSCEEEEEEEEETTTTSEEEEEEESCCSSCCC
T ss_pred CCcCCCCchhhhCcccccCCCcCeeEEeecCc---CCCCcEeeEEEEcCCCCEEEEEEeeEcCCCCC
Confidence 36799999999999999999999999999998 79999999999999999999999999999754
No 3
>2rpr_A Flywch-type zinc finger-containing protein 1; flywch domain, alternative splicing, DNA-binding, metal- binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=74.45 E-value=1.4 Score=34.30 Aligned_cols=50 Identities=16% Similarity=0.306 Sum_probs=33.7
Q ss_pred ccCCCccccccCccccCCCCCCccceeeccCCCCCCcccccccccCCCCCeEEEEeeccCCCC
Q 017895 126 TLDDGYCWRKYGQKDILGRNFPRGYYRCTHRHARGCLATKQVQRSDDDPSMFEVTYRGRHKCS 188 (364)
Q Consensus 126 ~~dDGy~WRKYGQK~I~gs~~PRsYYRCt~~~~~gC~A~KqVQr~~~dp~~~~vtY~G~Htc~ 188 (364)
++-|||.-.+--+ ...+.|.||+.....+|.|.=.... + + +.-.+.|||.
T Consensus 23 Lv~~Gy~Y~~~~~------~~~~~yWrC~~~~~~kCrARi~T~~-~-~-----~~~~~~HnH~ 72 (87)
T 2rpr_A 23 LVHESFLYRKEKA------AGEKVYWMCRDQARLGCRSRAITQG-H-R-----IMVMRSHCHQ 72 (87)
T ss_dssp EEETTEEEEEEEE------CSSCEEEEEGGGTTSCCCCEEEEET-T-E-----EEECSCCSSC
T ss_pred EEECCEEEEeeec------CCCcEEEEecCCCCCCCCEEEEEcC-C-C-----EECCCCcCCC
Confidence 5779997775322 1247899999877779999965442 1 1 3346889874
No 4
>1cz6_A Protein (androctonin); peptide, beta sheet, toxin; NMR {Androctonus australis} SCOP: j.3.1.3
Probab=39.89 E-value=9.1 Score=24.05 Aligned_cols=8 Identities=63% Similarity=1.506 Sum_probs=7.0
Q ss_pred cceeeccC
Q 017895 149 GYYRCTHR 156 (364)
Q Consensus 149 sYYRCt~~ 156 (364)
.||+||++
T Consensus 16 cyykctnr 23 (26)
T 1cz6_A 16 CYYKCTNR 23 (26)
T ss_dssp CEEEECCC
T ss_pred eEEEccCC
Confidence 69999986
No 5
>4afl_A P29ING4, inhibitor of growth protein 4; cell cycle, tumour suppressor, chromatin remodelling; 2.28A {Homo sapiens}
Probab=27.17 E-value=1.5e+02 Score=23.36 Aligned_cols=47 Identities=21% Similarity=0.322 Sum_probs=30.6
Q ss_pred HHHHH-HhHHHHHHHHHhhcC------CCCCHHHHHHHHHHHHHHHHHHHHHhc
Q 017895 13 LITEL-AQGKELAKRLRNHLN------PSSSPETREFLVQEILSSYEKALSMLN 59 (364)
Q Consensus 13 vi~EL-~~G~ElA~QL~~~L~------p~sS~e~~~~Lv~~IL~S~~kALsiL~ 59 (364)
.|+|| .+-+++.+++...+. +..+++.++.+..+|...|.+++.+..
T Consensus 26 ~irelD~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~l~~I~~~~~~~~~l~d 79 (104)
T 4afl_A 26 LMRDLDQRTEDLKAEIDKLATEYMSSARSLSSEEKLALLKQIQEAYGKCKEFGD 79 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCCSCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCChhhhHHHHHHHHHHHHHHHHHHH
Confidence 45555 455555555554432 344666777777999999999987654
No 6
>1xiw_B T-cell surface glycoprotein CD3 delta chain; CD3-epsilon, CD3-delta, UCHT1-SCFV, immunoglobulin fold, antibody-antigen complex; 1.90A {Homo sapiens} SCOP: b.1.1.4
Probab=25.66 E-value=34 Score=26.30 Aligned_cols=50 Identities=26% Similarity=0.402 Sum_probs=28.7
Q ss_pred CCCccccccCcc--------ccC--CCCCCccceeeccCCCCCCcccccccccCCCCCeEEEEeeccCCCC
Q 017895 128 DDGYCWRKYGQK--------DIL--GRNFPRGYYRCTHRHARGCLATKQVQRSDDDPSMFEVTYRGRHKCS 188 (364)
Q Consensus 128 dDGy~WRKYGQK--------~I~--gs~~PRsYYRCt~~~~~gC~A~KqVQr~~~dp~~~~vtY~G~Htc~ 188 (364)
..+..|-|-|.. .++ ..+-||+||.|.-. +.+.... +.+.|-|+=.++|-
T Consensus 17 ~~~i~W~k~~~~i~~~~~~tL~L~~~~~d~sG~Y~C~~~--------~~~~~~~---s~LqV~yR~C~NCi 76 (79)
T 1xiw_B 17 NTSITWVEGTVGTLLSDITRLDLGKRILDPRGIYRCNGT--------DIYKDKE---STVQVHYRMCQSCV 76 (79)
T ss_dssp SSCEEEEEECCCEEEGGGTEEEEEEGGGCCEEEEEEC----------------C---EEEEEEEECSCC--
T ss_pred CCCEEEEECCcccccccCCeEEeccCcCCCCeEEEecCC--------CCCCccc---EEEEEEhhhcCCcc
Confidence 566889988864 133 44559999999432 2221111 25778888888884
No 7
>1x9t_B N-terminl peptide of fiber protein; jellyroll domain, insertion domain, anti-parallel beta sheets, virus like particle/peptide complex; HET: C15; 3.50A {Human adenovirus 2}
Probab=25.43 E-value=27 Score=22.38 Aligned_cols=11 Identities=18% Similarity=0.652 Sum_probs=9.1
Q ss_pred cCCCCCCCCCC
Q 017895 351 DLDPNFQFDDL 361 (364)
Q Consensus 351 ~fdp~f~f~~~ 361 (364)
+|||.||||.+
T Consensus 10 dFnPVYPYd~~ 20 (26)
T 1x9t_B 10 TFNPVYPYDTE 20 (26)
T ss_pred cCcccccCCCC
Confidence 59999999765
No 8
>1nvp_D Transcription initiation factor IIA gamma chain; transcription regulation, DNA, complex, transcription/DNA complex; 2.10A {Homo sapiens} SCOP: a.32.1.1 b.56.1.1
Probab=19.11 E-value=1.1e+02 Score=25.20 Aligned_cols=37 Identities=19% Similarity=0.356 Sum_probs=28.4
Q ss_pred HhHHHHHHHHHhhcCCC-CCHHHHHHHHHHHHHHHHHHHHHh
Q 017895 18 AQGKELAKRLRNHLNPS-SSPETREFLVQEILSSYEKALSML 58 (364)
Q Consensus 18 ~~G~ElA~QL~~~L~p~-sS~e~~~~Lv~~IL~S~~kALsiL 58 (364)
.=|..|..-|.+++... -+ ..|+.+||.-|+++|.-.
T Consensus 9 tiG~aL~dtLdEli~~~~Is----p~la~kVL~~FDksi~~a 46 (108)
T 1nvp_D 9 TLGNSLQESLDELIQSQQIT----PQLALQVLLQFDKAINAA 46 (108)
T ss_dssp HHHHHHHHHHHHHHHTTSSC----HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHcCCCC----HHHHHHHHHHHHHHHHHH
Confidence 45888888888887722 23 368999999999999863
No 9
>1nh2_D Transcription initiation factor IIA small chain; transcription/DNA; HET: 5IU; 1.90A {Saccharomyces cerevisiae} SCOP: a.32.1.1 b.56.1.1 PDB: 1ytf_D* 1rm1_B
Probab=16.88 E-value=1.5e+02 Score=25.09 Aligned_cols=39 Identities=15% Similarity=0.283 Sum_probs=29.3
Q ss_pred HHHhHHHHHHHHHhhcCCC-CCHHHHHHHHHHHHHHHHHHHHHh
Q 017895 16 ELAQGKELAKRLRNHLNPS-SSPETREFLVQEILSSYEKALSML 58 (364)
Q Consensus 16 EL~~G~ElA~QL~~~L~p~-sS~e~~~~Lv~~IL~S~~kALsiL 58 (364)
...=|..|..-|.+++... -+ ..|+.+||.-|+++|...
T Consensus 11 ~StiG~aL~dtLdEli~~~~Is----p~la~kVL~~FDksi~~a 50 (121)
T 1nh2_D 11 RSTIGNSLVDALDTLISDGRIE----ASLAMRVLETFDKVVAET 50 (121)
T ss_dssp GSHHHHHHHHHHHHHHHTTSSC----HHHHHHHHHHHHHHHHHH
T ss_pred hchHHHHHHHHHHHHHHcCCCC----HHHHHHHHHHHHHHHHHH
Confidence 3345888888888887722 23 468899999999999863
No 10
>1wrd_A TOM1, target of MYB protein 1; three-helix bundle, ubiquitin-binding protein, protein trans signaling protein complex; 1.75A {Homo sapiens} SCOP: a.7.8.1
Probab=15.69 E-value=2.3e+02 Score=22.68 Aligned_cols=43 Identities=19% Similarity=0.189 Sum_probs=29.2
Q ss_pred HHHHHHHHhHHHHHHHHHhhcC---CCCCHHHHHHHHHHHHHHHHH
Q 017895 11 NILITELAQGKELAKRLRNHLN---PSSSPETREFLVQEILSSYEK 53 (364)
Q Consensus 11 k~vi~EL~~G~ElA~QL~~~L~---p~sS~e~~~~Lv~~IL~S~~k 53 (364)
.++..||...+.-++-|..+|. |+.......+|+.++..++.+
T Consensus 9 ~k~~~el~~v~~n~~lL~EML~~~~p~~~~~~~~el~~eL~~~c~~ 54 (103)
T 1wrd_A 9 GKLRSELEMVSGNVRVMSEMLTELVPTQAEPADLELLQELNRTCRA 54 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCTTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHH
Confidence 5688999999999999999987 433323334566555554443
Done!