Query 017897
Match_columns 364
No_of_seqs 347 out of 2571
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 04:23:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017897.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017897hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 1.9E-43 4.1E-48 341.6 25.9 258 76-354 5-350 (352)
2 KOG0117 Heterogeneous nuclear 100.0 5.1E-44 1.1E-48 333.9 20.2 276 41-360 52-338 (506)
3 KOG0145 RNA-binding protein EL 100.0 2.1E-40 4.6E-45 290.4 20.5 253 80-353 47-358 (360)
4 TIGR01628 PABP-1234 polyadenyl 100.0 1.3E-39 2.8E-44 333.3 24.0 247 77-355 3-263 (562)
5 TIGR01648 hnRNP-R-Q heterogene 100.0 5.1E-39 1.1E-43 321.8 26.0 271 41-356 27-310 (578)
6 TIGR01628 PABP-1234 polyadenyl 100.0 2.6E-37 5.7E-42 316.3 23.8 257 76-353 90-364 (562)
7 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 1.9E-34 4.2E-39 289.2 26.7 244 76-353 4-351 (481)
8 KOG0148 Apoptosis-promoting RN 100.0 1.3E-34 2.7E-39 255.6 20.0 232 72-358 4-243 (321)
9 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 3.5E-34 7.7E-39 287.3 25.7 251 76-353 98-480 (481)
10 TIGR01622 SF-CC1 splicing fact 100.0 3.3E-34 7.1E-39 286.5 24.7 256 75-353 90-448 (457)
11 KOG0144 RNA-binding protein CU 100.0 2.3E-35 4.9E-40 274.8 14.5 268 70-357 30-508 (510)
12 KOG0123 Polyadenylate-binding 100.0 2.2E-34 4.8E-39 276.5 18.1 233 84-352 8-245 (369)
13 KOG0127 Nucleolar protein fibr 100.0 4.2E-33 9.1E-38 266.0 21.9 256 76-352 7-377 (678)
14 TIGR01642 U2AF_lg U2 snRNP aux 100.0 1.6E-32 3.5E-37 277.9 25.7 251 74-352 175-501 (509)
15 TIGR01645 half-pint poly-U bin 100.0 4E-32 8.6E-37 272.6 23.8 158 74-253 107-282 (612)
16 TIGR01659 sex-lethal sex-letha 100.0 4.6E-31 1E-35 252.2 22.1 168 174-356 103-278 (346)
17 TIGR01645 half-pint poly-U bin 100.0 5E-30 1.1E-34 257.6 21.4 177 177-357 106-288 (612)
18 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 1.5E-28 3.2E-33 237.6 21.6 162 178-354 3-172 (352)
19 TIGR01622 SF-CC1 splicing fact 100.0 7.4E-28 1.6E-32 240.7 22.8 176 175-353 86-266 (457)
20 KOG0123 Polyadenylate-binding 100.0 1.1E-28 2.3E-33 237.2 13.4 259 77-358 79-354 (369)
21 TIGR01659 sex-lethal sex-letha 100.0 1.2E-27 2.6E-32 228.8 16.4 161 73-255 106-275 (346)
22 KOG0144 RNA-binding protein CU 99.9 8.3E-28 1.8E-32 224.4 12.8 168 175-356 31-209 (510)
23 KOG0148 Apoptosis-promoting RN 99.9 2.8E-27 6.1E-32 209.1 13.4 160 74-256 62-239 (321)
24 KOG0117 Heterogeneous nuclear 99.9 9.9E-26 2.1E-30 211.5 18.2 166 170-356 75-251 (506)
25 TIGR01648 hnRNP-R-Q heterogene 99.9 1.9E-25 4.1E-30 224.2 19.4 163 172-354 52-223 (578)
26 TIGR01642 U2AF_lg U2 snRNP aux 99.9 7.2E-25 1.6E-29 222.0 23.1 175 174-353 171-375 (509)
27 KOG0110 RNA-binding protein (R 99.9 2.2E-25 4.8E-30 219.6 17.4 247 76-353 387-693 (725)
28 KOG0131 Splicing factor 3b, su 99.9 1.1E-25 2.4E-30 188.5 11.9 167 177-357 8-181 (203)
29 KOG0145 RNA-binding protein EL 99.9 2.6E-25 5.6E-30 195.6 13.1 167 176-357 39-213 (360)
30 KOG0124 Polypyrimidine tract-b 99.9 1.8E-24 3.8E-29 198.3 18.7 253 75-350 114-532 (544)
31 KOG0127 Nucleolar protein fibr 99.9 6.5E-24 1.4E-28 203.4 17.0 175 178-353 5-196 (678)
32 KOG0109 RNA-binding protein LA 99.9 3.6E-24 7.8E-29 191.2 11.3 150 179-357 3-154 (346)
33 KOG0146 RNA-binding protein ET 99.9 2.3E-23 5E-28 184.0 12.9 191 166-357 7-369 (371)
34 KOG0147 Transcriptional coacti 99.9 5.9E-23 1.3E-27 197.7 14.6 244 84-351 189-526 (549)
35 KOG4205 RNA-binding protein mu 99.9 4.3E-23 9.4E-28 192.2 10.7 161 74-254 6-175 (311)
36 KOG0124 Polypyrimidine tract-b 99.9 7.9E-23 1.7E-27 187.5 11.7 174 177-356 112-293 (544)
37 KOG0131 Splicing factor 3b, su 99.9 2.2E-22 4.8E-27 168.8 7.6 157 76-254 11-176 (203)
38 KOG4205 RNA-binding protein mu 99.8 9.7E-21 2.1E-25 176.5 11.4 171 177-356 5-179 (311)
39 KOG0147 Transcriptional coacti 99.8 5.6E-21 1.2E-25 184.2 5.3 176 175-354 176-359 (549)
40 KOG0105 Alternative splicing f 99.8 4.5E-18 9.8E-23 143.1 14.7 157 177-340 5-175 (241)
41 KOG0109 RNA-binding protein LA 99.8 5.5E-19 1.2E-23 158.2 9.5 144 75-254 3-149 (346)
42 KOG4212 RNA-binding protein hn 99.8 3.8E-17 8.1E-22 153.4 19.7 159 72-250 42-289 (608)
43 KOG4211 Splicing factor hnRNP- 99.7 6.7E-17 1.4E-21 154.3 15.6 250 76-349 12-354 (510)
44 KOG4206 Spliceosomal protein s 99.7 3.8E-16 8.3E-21 136.2 16.1 169 178-351 9-220 (221)
45 KOG0110 RNA-binding protein (R 99.7 3.5E-17 7.5E-22 162.1 8.6 161 77-254 518-692 (725)
46 KOG1190 Polypyrimidine tract-b 99.7 2.9E-15 6.3E-20 139.9 18.3 170 178-353 297-491 (492)
47 KOG4212 RNA-binding protein hn 99.7 1.6E-15 3.5E-20 142.5 16.3 176 177-353 43-294 (608)
48 KOG4211 Splicing factor hnRNP- 99.7 1.9E-15 4E-20 144.5 16.5 168 177-350 9-179 (510)
49 PLN03134 glycine-rich RNA-bind 99.7 6.7E-16 1.5E-20 130.1 12.0 81 274-355 33-116 (144)
50 PLN03134 glycine-rich RNA-bind 99.7 1.1E-15 2.3E-20 128.9 11.9 78 177-254 33-113 (144)
51 KOG0106 Alternative splicing f 99.6 3.4E-16 7.4E-21 137.8 7.9 158 179-349 2-167 (216)
52 KOG0146 RNA-binding protein ET 99.6 1.3E-15 2.8E-20 135.1 10.2 77 177-253 284-363 (371)
53 KOG1190 Polypyrimidine tract-b 99.6 1.9E-14 4.1E-19 134.5 17.7 241 77-353 31-373 (492)
54 KOG1548 Transcription elongati 99.6 3.7E-14 8E-19 130.2 17.9 179 173-354 129-353 (382)
55 PF00076 RRM_1: RNA recognitio 99.6 1E-14 2.2E-19 106.9 8.8 68 181-248 1-70 (70)
56 KOG1457 RNA binding protein (c 99.6 3.8E-14 8.2E-19 122.9 12.6 161 177-340 33-273 (284)
57 KOG0120 Splicing factor U2AF, 99.5 9.6E-14 2.1E-18 135.9 14.3 250 77-352 178-491 (500)
58 PF00076 RRM_1: RNA recognitio 99.5 5.1E-14 1.1E-18 103.1 9.4 68 278-346 1-70 (70)
59 PLN03120 nucleic acid binding 99.5 5.3E-14 1.1E-18 127.2 11.3 76 178-254 4-79 (260)
60 COG0724 RNA-binding proteins ( 99.5 2E-13 4.3E-18 125.5 14.5 156 178-334 115-285 (306)
61 KOG0125 Ataxin 2-binding prote 99.5 7.2E-14 1.6E-18 127.5 9.4 82 173-254 91-173 (376)
62 KOG0149 Predicted RNA-binding 99.5 5.9E-14 1.3E-18 123.0 8.5 77 178-254 12-90 (247)
63 KOG0122 Translation initiation 99.5 7.5E-14 1.6E-18 122.7 9.1 79 274-353 188-269 (270)
64 PLN03120 nucleic acid binding 99.5 2.2E-13 4.7E-18 123.2 11.6 78 274-353 3-80 (260)
65 KOG0121 Nuclear cap-binding pr 99.5 9.1E-14 2E-18 110.6 6.9 77 176-252 34-113 (153)
66 KOG0125 Ataxin 2-binding prote 99.5 2.2E-13 4.8E-18 124.3 10.3 84 272-356 93-177 (376)
67 KOG1365 RNA-binding protein Fu 99.5 3.7E-13 8E-18 125.0 10.9 251 79-350 65-359 (508)
68 PF14259 RRM_6: RNA recognitio 99.4 5.6E-13 1.2E-17 98.0 8.7 68 181-248 1-70 (70)
69 PLN03121 nucleic acid binding 99.4 7.9E-13 1.7E-17 117.8 11.1 77 177-254 4-80 (243)
70 KOG1456 Heterogeneous nuclear 99.4 6.2E-11 1.4E-15 110.0 23.8 249 78-354 35-364 (494)
71 KOG0107 Alternative splicing f 99.4 3.7E-13 8.1E-18 112.8 7.6 75 177-254 9-84 (195)
72 PF14259 RRM_6: RNA recognitio 99.4 1.2E-12 2.6E-17 96.2 9.4 68 278-346 1-70 (70)
73 KOG1456 Heterogeneous nuclear 99.4 3.3E-11 7.2E-16 111.8 20.3 171 179-352 288-490 (494)
74 KOG0122 Translation initiation 99.4 9.2E-13 2E-17 115.9 9.3 79 176-254 187-268 (270)
75 smart00362 RRM_2 RNA recogniti 99.4 2.3E-12 5.1E-17 93.7 9.3 71 180-250 1-72 (72)
76 PLN03213 repressor of silencin 99.4 1.3E-12 2.9E-17 124.8 9.5 76 177-254 9-87 (759)
77 KOG0121 Nuclear cap-binding pr 99.4 1.1E-12 2.5E-17 104.4 6.8 79 272-351 33-114 (153)
78 PLN03121 nucleic acid binding 99.4 4.9E-12 1.1E-16 112.7 11.4 78 274-353 4-81 (243)
79 smart00362 RRM_2 RNA recogniti 99.4 5.3E-12 1.1E-16 91.8 9.6 71 277-348 1-72 (72)
80 PLN03213 repressor of silencin 99.3 3.5E-12 7.6E-17 121.9 9.5 80 272-354 7-89 (759)
81 KOG0149 Predicted RNA-binding 99.3 3.8E-12 8.3E-17 111.7 8.9 78 274-352 11-90 (247)
82 KOG0111 Cyclophilin-type pepti 99.3 1E-12 2.2E-17 113.8 5.0 87 274-361 9-98 (298)
83 KOG0105 Alternative splicing f 99.3 1.9E-11 4E-16 103.4 11.3 138 76-243 8-176 (241)
84 KOG0129 Predicted RNA-binding 99.3 4.1E-11 9E-16 115.8 14.9 154 175-334 256-431 (520)
85 KOG0114 Predicted RNA-binding 99.3 1.8E-11 3.9E-16 94.1 9.4 78 175-253 15-93 (124)
86 KOG0114 Predicted RNA-binding 99.3 2E-11 4.3E-16 93.8 8.4 78 273-352 16-94 (124)
87 KOG0126 Predicted RNA-binding 99.3 8.9E-13 1.9E-17 111.1 0.5 77 177-253 34-113 (219)
88 KOG0126 Predicted RNA-binding 99.3 1E-12 2.2E-17 110.8 0.7 78 274-352 34-114 (219)
89 KOG0111 Cyclophilin-type pepti 99.3 5.6E-12 1.2E-16 109.3 5.1 80 176-255 8-90 (298)
90 cd00590 RRM RRM (RNA recogniti 99.3 5E-11 1.1E-15 87.0 9.6 72 180-251 1-74 (74)
91 KOG0113 U1 small nuclear ribon 99.3 2E-11 4.3E-16 110.4 8.7 77 177-253 100-179 (335)
92 KOG0107 Alternative splicing f 99.2 1.9E-11 4.1E-16 102.6 7.9 78 274-355 9-87 (195)
93 KOG4207 Predicted splicing fac 99.2 1E-11 2.2E-16 106.7 6.3 79 176-254 11-92 (256)
94 smart00360 RRM RNA recognition 99.2 3.4E-11 7.4E-16 87.1 8.1 68 183-250 1-71 (71)
95 KOG0130 RNA-binding protein RB 99.2 1.9E-11 4.2E-16 98.2 6.9 80 272-352 69-151 (170)
96 smart00360 RRM RNA recognition 99.2 4.8E-11 1E-15 86.2 8.5 68 280-348 1-71 (71)
97 cd00590 RRM RRM (RNA recogniti 99.2 1.1E-10 2.3E-15 85.3 10.0 72 277-349 1-74 (74)
98 PF13893 RRM_5: RNA recognitio 99.2 6.9E-11 1.5E-15 83.0 8.0 55 292-350 1-56 (56)
99 KOG4207 Predicted splicing fac 99.2 3.4E-11 7.3E-16 103.6 7.2 79 274-353 12-93 (256)
100 KOG0113 U1 small nuclear ribon 99.2 9.6E-11 2.1E-15 106.0 9.7 80 273-353 99-181 (335)
101 KOG0106 Alternative splicing f 99.2 3.5E-11 7.5E-16 106.2 6.5 143 76-251 3-167 (216)
102 KOG0130 RNA-binding protein RB 99.2 4.5E-11 9.8E-16 96.1 6.0 76 178-253 72-150 (170)
103 KOG0108 mRNA cleavage and poly 99.2 6.2E-11 1.4E-15 115.7 8.1 76 179-254 19-97 (435)
104 COG0724 RNA-binding proteins ( 99.2 1.7E-10 3.7E-15 105.8 10.7 77 275-352 115-194 (306)
105 PF13893 RRM_5: RNA recognitio 99.2 1.3E-10 2.8E-15 81.6 7.5 55 195-252 1-56 (56)
106 KOG4206 Spliceosomal protein s 99.2 3E-10 6.4E-15 99.6 11.3 137 89-253 28-220 (221)
107 smart00361 RRM_1 RNA recogniti 99.1 3.1E-10 6.7E-15 83.6 8.2 59 289-348 2-70 (70)
108 KOG0128 RNA-binding protein SA 99.1 1.5E-11 3.3E-16 124.6 1.3 216 90-355 588-817 (881)
109 smart00361 RRM_1 RNA recogniti 99.1 3.3E-10 7.1E-15 83.5 7.8 58 192-249 2-69 (70)
110 KOG0108 mRNA cleavage and poly 99.1 1.5E-10 3.3E-15 112.9 7.4 79 276-355 19-100 (435)
111 KOG0120 Splicing factor U2AF, 99.1 4.4E-10 9.5E-15 110.5 9.3 172 177-353 174-369 (500)
112 KOG4454 RNA binding protein (R 99.0 1.2E-10 2.6E-15 101.1 0.8 131 176-334 7-143 (267)
113 KOG0129 Predicted RNA-binding 98.9 1.8E-08 3.8E-13 97.8 14.0 165 74-252 259-451 (520)
114 KOG0226 RNA-binding proteins [ 98.9 1.1E-09 2.4E-14 97.1 4.9 164 179-351 97-268 (290)
115 KOG0153 Predicted RNA-binding 98.9 6E-09 1.3E-13 96.3 8.2 77 174-254 224-302 (377)
116 KOG0153 Predicted RNA-binding 98.8 1E-08 2.2E-13 94.9 8.7 76 272-352 225-302 (377)
117 KOG0112 Large RNA-binding prot 98.8 2.3E-09 5E-14 109.5 4.2 160 176-356 370-534 (975)
118 KOG0132 RNA polymerase II C-te 98.8 7.7E-09 1.7E-13 104.2 7.7 78 272-354 418-496 (894)
119 KOG1457 RNA binding protein (c 98.8 1.6E-08 3.4E-13 88.3 7.8 153 70-242 30-273 (284)
120 KOG4208 Nucleolar RNA-binding 98.8 1.5E-08 3.2E-13 87.7 7.1 81 273-353 47-130 (214)
121 KOG0415 Predicted peptidyl pro 98.8 1.3E-08 2.9E-13 94.2 6.3 77 178-254 239-318 (479)
122 KOG4210 Nuclear localization s 98.7 1.4E-08 3.1E-13 94.7 6.5 174 177-355 87-266 (285)
123 KOG0132 RNA polymerase II C-te 98.7 1.8E-08 3.9E-13 101.6 7.3 74 177-254 420-494 (894)
124 KOG0415 Predicted peptidyl pro 98.7 1.6E-08 3.6E-13 93.5 6.3 82 272-354 236-320 (479)
125 KOG4661 Hsp27-ERE-TATA-binding 98.7 3.5E-08 7.7E-13 96.3 8.4 81 176-256 403-486 (940)
126 KOG0226 RNA-binding proteins [ 98.7 1.5E-08 3.3E-13 90.0 5.1 142 91-252 116-267 (290)
127 KOG4307 RNA binding protein RB 98.7 4.3E-07 9.2E-12 90.8 14.4 155 77-251 314-510 (944)
128 KOG1365 RNA-binding protein Fu 98.7 1.1E-07 2.3E-12 89.1 9.6 163 178-346 60-236 (508)
129 KOG4208 Nucleolar RNA-binding 98.7 8.7E-08 1.9E-12 83.0 8.0 76 177-252 48-127 (214)
130 KOG1548 Transcription elongati 98.6 5.5E-07 1.2E-11 83.5 11.9 155 74-253 134-350 (382)
131 KOG4661 Hsp27-ERE-TATA-binding 98.6 1.6E-07 3.4E-12 91.8 8.1 83 272-355 402-487 (940)
132 KOG4660 Protein Mei2, essentia 98.5 1.3E-07 2.8E-12 92.7 6.2 171 171-352 68-249 (549)
133 KOG0533 RRM motif-containing p 98.5 3.9E-07 8.5E-12 82.4 8.6 81 274-355 82-164 (243)
134 KOG4676 Splicing factor, argin 98.5 4.7E-08 1E-12 91.6 2.1 163 178-343 7-216 (479)
135 KOG4454 RNA binding protein (R 98.5 1.4E-07 3E-12 82.3 4.2 141 73-248 8-156 (267)
136 KOG4210 Nuclear localization s 98.4 1.6E-07 3.4E-12 87.8 4.3 160 75-253 89-262 (285)
137 KOG0533 RRM motif-containing p 98.4 1.1E-06 2.5E-11 79.5 8.9 80 175-254 80-161 (243)
138 KOG4209 Splicing factor RNPS1, 98.4 5.7E-07 1.2E-11 81.4 7.0 83 173-255 96-180 (231)
139 KOG0151 Predicted splicing reg 98.4 6.8E-07 1.5E-11 89.6 7.7 78 177-254 173-256 (877)
140 KOG0116 RasGAP SH3 binding pro 98.4 5.3E-07 1.2E-11 87.9 6.7 76 179-254 289-366 (419)
141 KOG0116 RasGAP SH3 binding pro 98.4 1.1E-06 2.3E-11 85.7 8.0 82 274-356 287-370 (419)
142 KOG0151 Predicted splicing reg 98.3 1.9E-06 4.2E-11 86.5 8.2 92 265-357 164-261 (877)
143 PF04059 RRM_2: RNA recognitio 98.3 5.7E-06 1.2E-10 64.4 9.2 77 276-352 2-86 (97)
144 KOG4209 Splicing factor RNPS1, 98.3 1.5E-06 3.3E-11 78.6 6.9 82 271-353 97-180 (231)
145 KOG4660 Protein Mei2, essentia 98.3 6.8E-07 1.5E-11 87.7 4.5 77 266-346 66-143 (549)
146 KOG4307 RNA binding protein RB 98.3 2E-06 4.4E-11 86.1 7.8 172 177-350 310-511 (944)
147 KOG2193 IGF-II mRNA-binding pr 98.3 6.7E-08 1.5E-12 91.4 -2.5 149 179-350 2-154 (584)
148 KOG0112 Large RNA-binding prot 98.2 2.9E-06 6.4E-11 87.3 8.4 151 76-254 374-530 (975)
149 KOG0128 RNA-binding protein SA 98.2 3.7E-07 8E-12 93.4 1.0 140 77-251 670-811 (881)
150 PF04059 RRM_2: RNA recognitio 98.2 1.1E-05 2.3E-10 62.9 8.7 75 179-253 2-85 (97)
151 PF08777 RRM_3: RNA binding mo 97.7 0.00012 2.5E-09 58.2 6.9 68 276-348 2-75 (105)
152 PF11608 Limkain-b1: Limkain b 97.7 0.00019 4E-09 53.7 7.0 67 276-351 3-75 (90)
153 PF08777 RRM_3: RNA binding mo 97.6 0.00032 6.9E-09 55.7 7.5 54 179-236 2-55 (105)
154 PF11608 Limkain-b1: Limkain b 97.5 0.00023 5E-09 53.2 5.7 66 179-252 3-74 (90)
155 PF14605 Nup35_RRM_2: Nup53/35 97.4 0.0005 1.1E-08 47.4 5.7 52 179-235 2-53 (53)
156 PF05172 Nup35_RRM: Nup53/35/4 97.3 0.0015 3.1E-08 51.3 7.7 75 178-253 6-90 (100)
157 KOG0115 RNA-binding protein p5 97.3 0.00062 1.3E-08 61.2 6.2 99 230-350 6-111 (275)
158 COG5175 MOT2 Transcriptional r 97.2 0.00036 7.7E-09 64.9 4.7 75 180-254 116-202 (480)
159 COG5175 MOT2 Transcriptional r 97.2 0.00069 1.5E-08 63.0 6.2 77 276-353 115-203 (480)
160 KOG2193 IGF-II mRNA-binding pr 97.2 2.4E-05 5.2E-10 74.4 -3.4 145 76-251 3-153 (584)
161 PF05172 Nup35_RRM: Nup53/35/4 97.1 0.0023 5.1E-08 50.1 7.6 77 275-353 6-92 (100)
162 KOG1995 Conserved Zn-finger pr 97.1 0.00055 1.2E-08 64.3 4.1 82 272-354 63-155 (351)
163 KOG1995 Conserved Zn-finger pr 97.0 0.00067 1.4E-08 63.8 4.2 77 177-253 65-152 (351)
164 KOG1996 mRNA splicing factor [ 96.9 0.0024 5.2E-08 58.4 6.7 76 275-351 281-365 (378)
165 PF14605 Nup35_RRM_2: Nup53/35 96.9 0.0029 6.2E-08 43.6 5.5 52 276-333 2-53 (53)
166 PF08952 DUF1866: Domain of un 96.8 0.0057 1.2E-07 50.9 7.2 55 291-352 52-106 (146)
167 KOG1855 Predicted RNA-binding 96.7 0.0016 3.5E-08 62.5 4.1 68 272-340 228-311 (484)
168 KOG2314 Translation initiation 96.7 0.0046 1E-07 61.3 7.2 76 176-251 56-140 (698)
169 KOG1855 Predicted RNA-binding 96.6 0.0019 4.1E-08 62.0 4.0 64 175-238 228-306 (484)
170 KOG2314 Translation initiation 96.6 0.0041 8.9E-08 61.7 6.1 74 275-349 58-140 (698)
171 KOG4849 mRNA cleavage factor I 96.5 0.0021 4.5E-08 60.1 3.1 73 178-250 80-157 (498)
172 KOG2202 U2 snRNP splicing fact 96.5 0.0012 2.7E-08 59.4 1.5 60 193-252 83-145 (260)
173 PF08952 DUF1866: Domain of un 96.3 0.014 3E-07 48.7 6.6 69 178-252 27-104 (146)
174 KOG3152 TBP-binding protein, a 96.2 0.0027 5.8E-08 57.2 2.3 70 177-246 73-157 (278)
175 PF10309 DUF2414: Protein of u 95.8 0.064 1.4E-06 38.1 7.1 53 276-334 6-60 (62)
176 KOG2202 U2 snRNP splicing fact 95.6 0.0054 1.2E-07 55.3 1.5 60 290-350 83-145 (260)
177 KOG2416 Acinus (induces apopto 95.5 0.014 3E-07 58.4 4.0 76 272-351 441-520 (718)
178 KOG4676 Splicing factor, argin 95.4 0.03 6.4E-07 53.5 5.8 76 276-352 8-88 (479)
179 KOG4849 mRNA cleavage factor I 95.3 0.018 3.9E-07 54.1 3.7 74 274-348 79-157 (498)
180 PF15023 DUF4523: Protein of u 95.3 0.077 1.7E-06 43.9 6.9 74 272-352 83-161 (166)
181 KOG3152 TBP-binding protein, a 95.2 0.011 2.4E-07 53.3 2.1 70 274-344 73-157 (278)
182 PF07292 NID: Nmi/IFP 35 domai 95.1 0.026 5.7E-07 43.0 3.6 72 221-299 1-76 (88)
183 KOG1996 mRNA splicing factor [ 95.0 0.072 1.6E-06 49.0 6.6 61 192-252 300-364 (378)
184 PF08675 RNA_bind: RNA binding 94.9 0.16 3.4E-06 38.2 7.1 55 177-238 8-63 (87)
185 PF07576 BRAP2: BRCA1-associat 94.4 0.42 9E-06 38.2 8.9 67 276-342 14-81 (110)
186 PF10309 DUF2414: Protein of u 94.3 0.31 6.7E-06 34.6 7.1 54 177-236 4-60 (62)
187 KOG0115 RNA-binding protein p5 94.2 0.063 1.4E-06 48.6 4.3 95 151-253 10-112 (275)
188 KOG2416 Acinus (induces apopto 93.5 0.071 1.5E-06 53.5 3.6 72 178-253 444-520 (718)
189 KOG2591 c-Mpl binding protein, 93.5 0.16 3.4E-06 50.8 5.9 69 177-250 174-247 (684)
190 PF08675 RNA_bind: RNA binding 93.3 0.34 7.3E-06 36.4 6.0 54 276-336 9-63 (87)
191 KOG2135 Proteins containing th 93.2 0.046 1E-06 53.4 1.7 71 180-254 374-445 (526)
192 PF03467 Smg4_UPF3: Smg-4/UPF3 93.2 0.15 3.2E-06 44.5 4.7 77 176-252 5-95 (176)
193 PF04847 Calcipressin: Calcipr 93.1 0.36 7.8E-06 42.3 7.0 62 288-354 8-72 (184)
194 KOG2591 c-Mpl binding protein, 93.0 0.28 6E-06 49.1 6.8 67 275-346 175-245 (684)
195 KOG0804 Cytoplasmic Zn-finger 92.4 0.79 1.7E-05 44.9 8.8 68 177-244 73-142 (493)
196 PF07576 BRAP2: BRCA1-associat 91.8 1.7 3.8E-05 34.7 8.9 65 179-243 13-80 (110)
197 KOG4285 Mitotic phosphoprotein 91.7 0.32 6.9E-06 45.1 5.1 69 179-252 198-267 (350)
198 KOG2068 MOT2 transcription fac 91.2 0.072 1.6E-06 50.1 0.5 78 276-354 78-164 (327)
199 PF10567 Nab6_mRNP_bdg: RNA-re 90.8 10 0.00022 35.3 13.9 163 173-336 10-212 (309)
200 PF03467 Smg4_UPF3: Smg-4/UPF3 90.7 0.38 8.1E-06 41.9 4.5 78 275-352 7-97 (176)
201 KOG2068 MOT2 transcription fac 90.7 0.11 2.5E-06 48.8 1.3 76 179-254 78-162 (327)
202 KOG0804 Cytoplasmic Zn-finger 90.5 0.85 1.8E-05 44.7 7.0 68 275-342 74-142 (493)
203 KOG4574 RNA-binding protein (c 90.5 0.18 3.9E-06 52.7 2.6 72 279-355 302-376 (1007)
204 KOG2135 Proteins containing th 89.9 0.22 4.7E-06 48.9 2.5 72 277-353 374-446 (526)
205 PF04847 Calcipressin: Calcipr 88.7 1.5 3.3E-05 38.4 6.7 60 191-254 8-70 (184)
206 PF11767 SET_assoc: Histone ly 88.2 2.7 5.8E-05 30.3 6.5 55 188-249 10-65 (66)
207 PF15023 DUF4523: Protein of u 87.9 1.6 3.5E-05 36.2 5.9 71 177-253 85-160 (166)
208 KOG4285 Mitotic phosphoprotein 86.7 1.4 3E-05 41.0 5.4 68 276-349 198-266 (350)
209 PF03880 DbpA: DbpA RNA bindin 84.2 4.2 9.2E-05 29.8 6.1 59 285-350 11-74 (74)
210 KOG2253 U1 snRNP complex, subu 84.0 0.99 2.2E-05 46.2 3.4 69 274-350 39-108 (668)
211 PF14111 DUF4283: Domain of un 83.5 1.8 4E-05 36.1 4.5 117 181-312 18-141 (153)
212 KOG2253 U1 snRNP complex, subu 82.7 1.2 2.6E-05 45.6 3.4 144 177-334 39-194 (668)
213 PF03880 DbpA: DbpA RNA bindin 82.0 6.3 0.00014 28.8 6.3 58 188-252 11-74 (74)
214 KOG4574 RNA-binding protein (c 79.8 1.2 2.5E-05 47.0 2.2 71 180-254 300-373 (1007)
215 PF11767 SET_assoc: Histone ly 75.7 18 0.00039 26.0 6.8 54 286-347 11-65 (66)
216 KOG4483 Uncharacterized conser 69.4 11 0.00023 36.6 5.6 57 177-238 390-447 (528)
217 KOG2318 Uncharacterized conser 66.6 26 0.00057 35.7 7.9 74 272-345 171-298 (650)
218 PF03468 XS: XS domain; Inter 62.6 7.3 0.00016 31.4 2.7 59 180-239 10-78 (116)
219 PF07292 NID: Nmi/IFP 35 domai 62.5 2.3 5.1E-05 32.4 -0.2 26 175-200 49-74 (88)
220 KOG4483 Uncharacterized conser 60.9 22 0.00048 34.6 5.9 63 274-341 390-452 (528)
221 PF03468 XS: XS domain; Inter 49.4 22 0.00048 28.6 3.5 48 277-326 10-66 (116)
222 KOG4410 5-formyltetrahydrofola 47.5 23 0.00049 33.0 3.6 46 180-229 332-378 (396)
223 PRK14548 50S ribosomal protein 47.2 74 0.0016 24.0 5.8 52 282-334 27-79 (84)
224 PF11411 DNA_ligase_IV: DNA li 46.9 15 0.00032 23.0 1.6 17 84-100 19-35 (36)
225 PF15513 DUF4651: Domain of un 46.7 35 0.00076 24.2 3.7 27 88-114 8-34 (62)
226 TIGR03636 L23_arch archaeal ri 46.2 84 0.0018 23.3 5.8 56 278-334 16-72 (77)
227 KOG4365 Uncharacterized conser 43.3 3.3 7.1E-05 40.6 -2.5 81 276-358 4-87 (572)
228 KOG4019 Calcineurin-mediated s 41.1 21 0.00045 31.0 2.2 74 276-354 11-91 (193)
229 KOG4410 5-formyltetrahydrofola 40.9 64 0.0014 30.1 5.4 48 274-326 329-377 (396)
230 KOG2318 Uncharacterized conser 38.1 1.1E+02 0.0024 31.5 7.0 76 176-251 172-304 (650)
231 TIGR02542 B_forsyth_147 Bacter 35.9 98 0.0021 24.9 5.0 113 186-327 11-130 (145)
232 KOG1295 Nonsense-mediated deca 34.8 54 0.0012 31.8 4.1 66 177-242 6-77 (376)
233 PF09707 Cas_Cas2CT1978: CRISP 30.4 1.2E+02 0.0026 23.1 4.6 49 178-227 25-73 (86)
234 PF14111 DUF4283: Domain of un 26.7 1.3E+02 0.0028 24.7 4.8 78 127-214 56-141 (153)
235 PRK14548 50S ribosomal protein 26.0 2.5E+02 0.0053 21.2 5.6 55 180-235 22-78 (84)
236 PF14893 PNMA: PNMA 23.9 65 0.0014 31.0 2.7 51 177-227 17-71 (331)
237 PF07530 PRE_C2HC: Associated 23.2 1.8E+02 0.0039 20.9 4.3 59 193-253 2-63 (68)
238 PRK11558 putative ssRNA endonu 23.2 1.5E+02 0.0033 23.1 4.1 49 178-227 27-75 (97)
239 cd04889 ACT_PDH-BS-like C-term 21.3 2.5E+02 0.0055 18.4 5.8 42 193-235 13-55 (56)
240 PF10567 Nab6_mRNP_bdg: RNA-re 21.0 1.6E+02 0.0034 27.8 4.4 76 275-351 15-106 (309)
241 KOG2891 Surface glycoprotein [ 20.8 80 0.0017 29.3 2.5 61 131-211 122-194 (445)
242 PRK05738 rplW 50S ribosomal pr 20.5 1.9E+02 0.0041 22.1 4.2 36 278-313 22-58 (92)
No 1
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=100.00 E-value=1.9e-43 Score=341.59 Aligned_cols=258 Identities=18% Similarity=0.279 Sum_probs=213.3
Q ss_pred hcccCCccccccHHHHHHHHhccCCcceEEecCCCCCCcccccCCCCCCCCCeEEeeecccCCCCCccccccchhhhhhc
Q 017897 76 ERKMGESFKDCEMRDLVDMLSKLNPMAAEFVPPSLANGQIFNFNPAFFGPNGFGYTNNFIMHTDGTANTNGHTTTRRKRN 155 (364)
Q Consensus 76 ~~~~g~~~~~~~~~~L~~~Fs~~G~i~~v~v~~d~~t~~s~~~~~~~~~~~GfaFV~f~~~~~~~~~~~~a~~~~a~~~~ 155 (364)
..++|+|++++++++|+++|++||+|.+|+|++|+.++++ + |||||.|.+ .+ +|.+ |++.+
T Consensus 5 ~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s-~---------g~afV~f~~-~~------~A~~--Ai~~l 65 (352)
T TIGR01661 5 NLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQS-L---------GYGFVNYVR-PE------DAEK--AVNSL 65 (352)
T ss_pred EEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCcc-c---------eEEEEEECc-HH------HHHH--HHhhc
Confidence 5678999999999999999999999999999999999998 8 999999999 66 6888 99988
Q ss_pred CCC--CCccccccCCcccccCCCCCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCC--CCCceEEEEEeCCHHHH
Q 017897 156 GYS--QGKRRMNCRTSNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP--NSVLRFAFVEFTDEEGA 231 (364)
Q Consensus 156 ~~~--~g~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~--~~~rG~aFV~F~~~~~A 231 (364)
++. .|+. +.+............++|||+|||.++++++|+++|+.||.|..++++.+. +.++|||||+|.+.++|
T Consensus 66 ~g~~l~g~~-i~v~~a~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A 144 (352)
T TIGR01661 66 NGLRLQNKT-IKVSYARPSSDSIKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEA 144 (352)
T ss_pred ccEEECCee-EEEEeecccccccccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHH
Confidence 877 6776 222223333334456789999999999999999999999999999999886 45799999999999999
Q ss_pred HHHHH-ccccccCC--eeEEEeeCCCCCCCCCC------------CC---------------------------------
Q 017897 232 RAALS-LAGTMLGF--YPVRVLPSKTAIAPVNP------------TF--------------------------------- 263 (364)
Q Consensus 232 ~~al~-l~g~~l~g--~~i~V~~a~~~~~~~~~------------~~--------------------------------- 263 (364)
..|++ |+|..+.| .+|.|.++......... ..
T Consensus 145 ~~ai~~l~g~~~~g~~~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (352)
T TIGR01661 145 DRAIKTLNGTTPSGCTEPITVKFANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTA 224 (352)
T ss_pred HHHHHHhCCCccCCCceeEEEEECCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhh
Confidence 99998 99999877 67899887532200000 00
Q ss_pred --------------------CCCCcc-------------ccccCceEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEec
Q 017897 264 --------------------LPRSED-------------EREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLG 310 (364)
Q Consensus 264 --------------------~~~~~~-------------~~~~~~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~ 310 (364)
.+.... .....+++|||+|||+.+++++|+++|++| |.|.+|+|++
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~f-G~v~~v~i~~ 303 (352)
T TIGR01661 225 VLAHQQQQHAVAQQHAAQRASPPATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPF-GAVQNVKIIR 303 (352)
T ss_pred hhhhhhhhcccccccccccCCCccccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhC-CCeEEEEEeE
Confidence 000000 001123479999999999999999999997 9999999999
Q ss_pred cC--CCCeeEEEEEecCHHHHHHHHh-cCCCeeCCeeeEEeecCCCC
Q 017897 311 DY--QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSPSKTPV 354 (364)
Q Consensus 311 d~--~~~kg~afV~F~~~e~A~~Al~-lng~~~~g~~l~V~~ak~~~ 354 (364)
|. +.++|||||+|.+.++|.+||. |||..|+|+.|+|.|..++.
T Consensus 304 d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~~~~~ 350 (352)
T TIGR01661 304 DLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFKTNKA 350 (352)
T ss_pred cCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEccCCC
Confidence 85 7899999999999999999999 99999999999999988764
No 2
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=5.1e-44 Score=333.85 Aligned_cols=276 Identities=21% Similarity=0.287 Sum_probs=239.2
Q ss_pred CCCCCcchhccccccCCCCCCCCceeeeecCccchhcccCCccccccHHHHHHHHhccCCcceEEecCCCCCCcccccCC
Q 017897 41 SGNGNANIQIQNGQTKPGAGAGGGFVNVNASDNHMERKMGESFKDCEMRDLVDMLSKLNPMAAEFVPPSLANGQIFNFNP 120 (364)
Q Consensus 41 ~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~L~~~Fs~~G~i~~v~v~~d~~t~~s~~~~~ 120 (364)
.....|.++++++|.+.|+.+.++..... ..-.+.++|+++-+..+++|+.+|++.|+|.+++||+|+.+|.+ |
T Consensus 52 ~E~tgy~l~ve~gqrk~ggPpP~weg~~p--~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~n-R--- 125 (506)
T KOG0117|consen 52 LERTGYTLVVENGQRKYGGPPPGWEGPPP--PRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDN-R--- 125 (506)
T ss_pred HHhcCceEEEeccccccCCCCCcccCCCC--CCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCC-c---
Confidence 55678999999999999998888766653 44468899999999999999999999999999999999999988 8
Q ss_pred CCCCCCCeEEeeecccCCCCCccccccchhhhhhcCCC---CCccccccCCcccccCCCCCcEEEEeCCCCCCcHHHHHH
Q 017897 121 AFFGPNGFGYTNNFIMHTDGTANTNGHTTTRRKRNGYS---QGKRRMNCRTSNAQQDEVIRRTVYVSDIDQQVTEEQLAT 197 (364)
Q Consensus 121 ~~~~~~GfaFV~f~~~~~~~~~~~~a~~~~a~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~ 197 (364)
|||||+|.+. . +|+. |++.+|.. .||. +.+..+ ..++.|||||||.+.++++|++
T Consensus 126 ------GYAFVtf~~K-e------~Aq~--Aik~lnn~Eir~GK~---igvc~S----van~RLFiG~IPK~k~keeIle 183 (506)
T KOG0117|consen 126 ------GYAFVTFCTK-E------EAQE--AIKELNNYEIRPGKL---LGVCVS----VANCRLFIGNIPKTKKKEEILE 183 (506)
T ss_pred ------ceEEEEeecH-H------HHHH--HHHHhhCccccCCCE---eEEEEe----eecceeEeccCCccccHHHHHH
Confidence 9999999994 4 4888 99998887 7777 443322 2578999999999999999999
Q ss_pred HhhcCCC-eeEEEEecCC---CCCceEEEEEeCCHHHHHHHHH--ccccc-cCCeeEEEeeCCCCCCCCCCCCCCCCccc
Q 017897 198 LFLTCGQ-VVDCRICGDP---NSVLRFAFVEFTDEEGARAALS--LAGTM-LGFYPVRVLPSKTAIAPVNPTFLPRSEDE 270 (364)
Q Consensus 198 ~F~~~G~-i~~~~i~~d~---~~~rG~aFV~F~~~~~A~~al~--l~g~~-l~g~~i~V~~a~~~~~~~~~~~~~~~~~~ 270 (364)
.|++.++ |++|.+..++ .++||||||+|.++..|..|.+ +++.. ++|..+.|.|+++...+ ..+
T Consensus 184 e~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~~tVdWAep~~e~---------ded 254 (506)
T KOG0117|consen 184 EMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNAITVDWAEPEEEP---------DED 254 (506)
T ss_pred HHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeecCCcceeeccCcccCC---------Chh
Confidence 9999985 7888887755 4689999999999999999986 66654 89999999999753211 122
Q ss_pred cccCceEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccCCCCeeEEEEEecCHHHHHHHHh-cCCCeeCCeeeEEee
Q 017897 271 REMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSP 349 (364)
Q Consensus 271 ~~~~~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~e~A~~Al~-lng~~~~g~~l~V~~ 349 (364)
.....+.|||+||+.++|||.|+++|++| |.|.+|+.++| ||||+|.++++|.+||+ +||.+|+|..|.|.+
T Consensus 255 ~ms~VKvLYVRNL~~~tTeE~lk~~F~~~-G~veRVkk~rD------YaFVHf~eR~davkAm~~~ngkeldG~~iEvtL 327 (506)
T KOG0117|consen 255 TMSKVKVLYVRNLMESTTEETLKKLFNEF-GKVERVKKPRD------YAFVHFAEREDAVKAMKETNGKELDGSPIEVTL 327 (506)
T ss_pred hhhheeeeeeeccchhhhHHHHHHHHHhc-cceEEeecccc------eeEEeecchHHHHHHHHHhcCceecCceEEEEe
Confidence 35667999999999999999999999997 99999999988 99999999999999999 999999999999999
Q ss_pred cCCCCCCCCCC
Q 017897 350 SKTPVRPRAPR 360 (364)
Q Consensus 350 ak~~~~~~~~r 360 (364)
|||+..++..|
T Consensus 328 AKP~~k~k~~r 338 (506)
T KOG0117|consen 328 AKPVDKKKKER 338 (506)
T ss_pred cCChhhhccch
Confidence 99998777666
No 3
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=2.1e-40 Score=290.42 Aligned_cols=253 Identities=18% Similarity=0.283 Sum_probs=214.6
Q ss_pred CCccccccHHHHHHHHhccCCcceEEecCCCCCCcccccCCCCCCCCCeEEeeecccCCCCCccccccchhhhhhcCCC-
Q 017897 80 GESFKDCEMRDLVDMLSKLNPMAAEFVPPSLANGQIFNFNPAFFGPNGFGYTNNFIMHTDGTANTNGHTTTRRKRNGYS- 158 (364)
Q Consensus 80 g~~~~~~~~~~L~~~Fs~~G~i~~v~v~~d~~t~~s~~~~~~~~~~~GfaFV~f~~~~~~~~~~~~a~~~~a~~~~~~~- 158 (364)
.=|+-.-|.++|+.+|+.+|+|+||+++||+.||.| + |||||+|.. +. ||++ |+..+|+.
T Consensus 47 NYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqS-L---------GYGFVNYv~-p~------DAe~--AintlNGLr 107 (360)
T KOG0145|consen 47 NYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQS-L---------GYGFVNYVR-PK------DAEK--AINTLNGLR 107 (360)
T ss_pred eecccccCHHHHHHHhhcccceeeeeeeeccccccc-c---------ccceeeecC-hH------HHHH--HHhhhccee
Confidence 445556699999999999999999999999999999 8 999999999 88 8999 99999887
Q ss_pred -CCccccccCCcccccCCCCCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEeCCHHHHHHHH
Q 017897 159 -QGKRRMNCRTSNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS--VLRFAFVEFTDEEGARAAL 235 (364)
Q Consensus 159 -~g~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~~~--~rG~aFV~F~~~~~A~~al 235 (364)
+.|. |.+...++..+.....+|||.+||.++|..+|+++|++||.|..-+|+.|..+ +||.|||.|+..++|+.||
T Consensus 108 LQ~KT-IKVSyARPSs~~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AI 186 (360)
T KOG0145|consen 108 LQNKT-IKVSYARPSSDSIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAI 186 (360)
T ss_pred eccce-EEEEeccCChhhhcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHH
Confidence 5554 44444555566677889999999999999999999999999999999998854 7999999999999999999
Q ss_pred H-ccccccCCe--eEEEeeCCCCCCCCCC--------------------------------------CCCCCCccc----
Q 017897 236 S-LAGTMLGFY--PVRVLPSKTAIAPVNP--------------------------------------TFLPRSEDE---- 270 (364)
Q Consensus 236 ~-l~g~~l~g~--~i~V~~a~~~~~~~~~--------------------------------------~~~~~~~~~---- 270 (364)
+ |||+.-.|. +|.|+++.......+. .|.|...+.
T Consensus 187 k~lNG~~P~g~tepItVKFannPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l 266 (360)
T KOG0145|consen 187 KGLNGQKPSGCTEPITVKFANNPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSGL 266 (360)
T ss_pred HhccCCCCCCCCCCeEEEecCCcccccchhhhHHhhcCccccCCCcccchhhhhccccccchhhhhccCCCcccccccee
Confidence 9 999998774 8999998642111100 012211111
Q ss_pred -------cccCceEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccC--CCCeeEEEEEecCHHHHHHHHh-cCCCee
Q 017897 271 -------REMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVL 340 (364)
Q Consensus 271 -------~~~~~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~--~~~kg~afV~F~~~e~A~~Al~-lng~~~ 340 (364)
......+|||.||.++.+|.-|+++|.+| |.|..|+|++|. ++++|||||.+.+.++|..||. |||..+
T Consensus 267 ~~~~lp~~~~~g~ciFvYNLspd~de~~LWQlFgpF-GAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~l 345 (360)
T KOG0145|consen 267 AGVNLPGGPGGGWCIFVYNLSPDADESILWQLFGPF-GAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRL 345 (360)
T ss_pred eeeccCCCCCCeeEEEEEecCCCchHhHHHHHhCcc-cceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccc
Confidence 13357899999999999999999999997 999999999997 6899999999999999999999 999999
Q ss_pred CCeeeEEeecCCC
Q 017897 341 GSLPIRVSPSKTP 353 (364)
Q Consensus 341 ~g~~l~V~~ak~~ 353 (364)
+++.|+|+|...+
T Consensus 346 g~rvLQVsFKtnk 358 (360)
T KOG0145|consen 346 GDRVLQVSFKTNK 358 (360)
T ss_pred cceEEEEEEecCC
Confidence 9999999997654
No 4
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=100.00 E-value=1.3e-39 Score=333.32 Aligned_cols=247 Identities=22% Similarity=0.331 Sum_probs=216.0
Q ss_pred cccCCccccccHHHHHHHHhccCCcceEEecCCCCCCcccccCCCCCCCCCeEEeeecccCCCCCccccccchhhhhhcC
Q 017897 77 RKMGESFKDCEMRDLVDMLSKLNPMAAEFVPPSLANGQIFNFNPAFFGPNGFGYTNNFIMHTDGTANTNGHTTTRRKRNG 156 (364)
Q Consensus 77 ~~~g~~~~~~~~~~L~~~Fs~~G~i~~v~v~~d~~t~~s~~~~~~~~~~~GfaFV~f~~~~~~~~~~~~a~~~~a~~~~~ 156 (364)
.++|+|++++|+++|+++|++||+|.+|+|++|..|+++ + |||||+|.+ .+ +|++ |++.++
T Consensus 3 l~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s-~---------G~afV~F~~-~~------~A~~--Al~~ln 63 (562)
T TIGR01628 3 LYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRS-L---------GYGYVNFQN-PA------DAER--ALETMN 63 (562)
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCc-c---------eEEEEEECC-HH------HHHH--HHHHhC
Confidence 578999999999999999999999999999999999999 8 999999999 66 7999 999998
Q ss_pred CC--CCccccccCCcccccCCC----CCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCC-CCCceEEEEEeCCHH
Q 017897 157 YS--QGKRRMNCRTSNAQQDEV----IRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP-NSVLRFAFVEFTDEE 229 (364)
Q Consensus 157 ~~--~g~~~~~~~~~~~~~~~~----~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~-~~~rG~aFV~F~~~~ 229 (364)
+. .|++ +++.|..+++. ...+|||+|||.++++++|+++|+.||.|.+|+++.+. ++++|||||+|.+.+
T Consensus 64 ~~~i~gk~---i~i~~s~~~~~~~~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~~g~skg~afV~F~~~e 140 (562)
T TIGR01628 64 FKRLGGKP---IRIMWSQRDPSLRRSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDENGKSRGYGFVHFEKEE 140 (562)
T ss_pred CCEECCee---EEeecccccccccccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecCCCCcccEEEEEECCHH
Confidence 87 7888 66666654432 34579999999999999999999999999999999886 458999999999999
Q ss_pred HHHHHHH-ccccccCCeeEEEeeCCCCCCCCCCCCCCCCccccccCceEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEE
Q 017897 230 GARAALS-LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRL 308 (364)
Q Consensus 230 ~A~~al~-l~g~~l~g~~i~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i 308 (364)
+|.+|++ ++|..+.|+.|.|.+........ .......++|||+|||..+++++|+++|++| |.|.++.+
T Consensus 141 ~A~~Ai~~lng~~~~~~~i~v~~~~~~~~~~---------~~~~~~~~~l~V~nl~~~~tee~L~~~F~~f-G~i~~~~i 210 (562)
T TIGR01628 141 SAKAAIQKVNGMLLNDKEVYVGRFIKKHERE---------AAPLKKFTNLYVKNLDPSVNEDKLRELFAKF-GEITSAAV 210 (562)
T ss_pred HHHHHHHHhcccEecCceEEEeccccccccc---------cccccCCCeEEEeCCCCcCCHHHHHHHHHhc-CCEEEEEE
Confidence 9999998 99999999999997653211100 1123345789999999999999999999997 99999999
Q ss_pred eccC-CCCeeEEEEEecCHHHHHHHHh-cCCCeeC----CeeeEEeecCCCCC
Q 017897 309 LGDY-QHSTRIAFVEFAMAESAIAALN-CSGAVLG----SLPIRVSPSKTPVR 355 (364)
Q Consensus 309 ~~d~-~~~kg~afV~F~~~e~A~~Al~-lng~~~~----g~~l~V~~ak~~~~ 355 (364)
+++. +.++|||||+|.+.++|.+|+. |+|..+. |+.|.|.+++.+..
T Consensus 211 ~~~~~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~g~~l~v~~a~~k~e 263 (562)
T TIGR01628 211 MKDGSGRSRGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEGKKLYVGRAQKRAE 263 (562)
T ss_pred EECCCCCcccEEEEEECCHHHHHHHHHHhCCcEecccccceeeEeecccChhh
Confidence 9885 7889999999999999999999 9999999 99999999876543
No 5
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=100.00 E-value=5.1e-39 Score=321.80 Aligned_cols=271 Identities=21% Similarity=0.222 Sum_probs=220.5
Q ss_pred CCCCCcchhccccccCCCCCCCCceeeeecCccchhcccCCccccccHHHHHHHHhccCCcceEEecCCCCCCcccccCC
Q 017897 41 SGNGNANIQIQNGQTKPGAGAGGGFVNVNASDNHMERKMGESFKDCEMRDLVDMLSKLNPMAAEFVPPSLANGQIFNFNP 120 (364)
Q Consensus 41 ~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~L~~~Fs~~G~i~~v~v~~d~~t~~s~~~~~ 120 (364)
...+.|...+.++|...|.+...+.... .......++|+|+|++++++|+++|++||+|.+|+|++| .++++ +
T Consensus 27 ~~~~gy~~~~~~g~r~~g~Pp~~~~~~~--p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~s-R--- 99 (578)
T TIGR01648 27 LERTGYTLVQENGQRKYGGPPPGWSGVQ--PGRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQN-R--- 99 (578)
T ss_pred HHhhCccccccCCcccCCCCCCcccCCC--CCCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCc-c---
Confidence 5568889999999999987666554332 334468899999999999999999999999999999999 77878 7
Q ss_pred CCCCCCCeEEeeecccCCCCCccccccchhhhhhcCCC---CCccccccCCcccccCCCCCcEEEEeCCCCCCcHHHHHH
Q 017897 121 AFFGPNGFGYTNNFIMHTDGTANTNGHTTTRRKRNGYS---QGKRRMNCRTSNAQQDEVIRRTVYVSDIDQQVTEEQLAT 197 (364)
Q Consensus 121 ~~~~~~GfaFV~f~~~~~~~~~~~~a~~~~a~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~ 197 (364)
|||||.|.+ .+ +|+. |++.++.. .|+. +.+.. ....++|||+|||.++++++|.+
T Consensus 100 ------GfaFV~F~~-~e------~A~~--Ai~~lng~~i~~Gr~---l~V~~----S~~~~rLFVgNLP~~~TeeeL~e 157 (578)
T TIGR01648 100 ------GYAFVTFCG-KE------EAKE--AVKLLNNYEIRPGRL---LGVCI----SVDNCRLFVGGIPKNKKREEILE 157 (578)
T ss_pred ------ceEEEEeCC-HH------HHHH--HHHHcCCCeecCCcc---ccccc----cccCceeEeecCCcchhhHHHHH
Confidence 999999999 66 6888 99998865 3443 22222 22468999999999999999999
Q ss_pred HhhcCCC-eeEEEEec---CCCCCceEEEEEeCCHHHHHHHHH-ccc--cccCCeeEEEeeCCCCCCCCCCCCCCCCccc
Q 017897 198 LFLTCGQ-VVDCRICG---DPNSVLRFAFVEFTDEEGARAALS-LAG--TMLGFYPVRVLPSKTAIAPVNPTFLPRSEDE 270 (364)
Q Consensus 198 ~F~~~G~-i~~~~i~~---d~~~~rG~aFV~F~~~~~A~~al~-l~g--~~l~g~~i~V~~a~~~~~~~~~~~~~~~~~~ 270 (364)
.|++++. ++++.++. +..+++|||||+|.++++|..|++ |+. ..+.|+.|.|.|+.+.... ..+
T Consensus 158 eFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~VdwA~p~~~~---------d~~ 228 (578)
T TIGR01648 158 EFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIAVDWAEPEEEV---------DED 228 (578)
T ss_pred HhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEEEEeecccccc---------ccc
Confidence 9999974 55554443 224579999999999999999997 543 3588999999998642211 111
Q ss_pred cccCceEEEEeCCCCCCCHHHHHHHhhhcC--CceeEEEEeccCCCCeeEEEEEecCHHHHHHHHh-cCCCeeCCeeeEE
Q 017897 271 REMCSRTIYCTNIDKKVTQGDIKLFFESVC--GEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRV 347 (364)
Q Consensus 271 ~~~~~~~l~V~nLp~~~tee~L~~~F~~~~--G~I~~v~i~~d~~~~kg~afV~F~~~e~A~~Al~-lng~~~~g~~l~V 347 (364)
.....++|||+|||..+++++|+++|++ | |.|.+|.++++ ||||+|.++++|.+|+. ||+..|+|+.|+|
T Consensus 229 ~~~~~k~LfVgNL~~~~tee~L~~~F~~-f~~G~I~rV~~~rg------fAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V 301 (578)
T TIGR01648 229 VMAKVKILYVRNLMTTTTEEIIEKSFSE-FKPGKVERVKKIRD------YAFVHFEDREDAVKAMDELNGKELEGSEIEV 301 (578)
T ss_pred ccccccEEEEeCCCCCCCHHHHHHHHHh-cCCCceEEEEeecC------eEEEEeCCHHHHHHHHHHhCCCEECCEEEEE
Confidence 1234579999999999999999999999 7 99999988754 99999999999999999 9999999999999
Q ss_pred eecCCCCCC
Q 017897 348 SPSKTPVRP 356 (364)
Q Consensus 348 ~~ak~~~~~ 356 (364)
+|++++..+
T Consensus 302 ~~Akp~~~~ 310 (578)
T TIGR01648 302 TLAKPVDKK 310 (578)
T ss_pred EEccCCCcc
Confidence 999886544
No 6
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=100.00 E-value=2.6e-37 Score=316.31 Aligned_cols=257 Identities=22% Similarity=0.317 Sum_probs=208.4
Q ss_pred hcccCCccccccHHHHHHHHhccCCcceEEecCCCCCCcccccCCCCCCCCCeEEeeecccCCCCCccccccchhhhhhc
Q 017897 76 ERKMGESFKDCEMRDLVDMLSKLNPMAAEFVPPSLANGQIFNFNPAFFGPNGFGYTNNFIMHTDGTANTNGHTTTRRKRN 155 (364)
Q Consensus 76 ~~~~g~~~~~~~~~~L~~~Fs~~G~i~~v~v~~d~~t~~s~~~~~~~~~~~GfaFV~f~~~~~~~~~~~~a~~~~a~~~~ 155 (364)
..++++|++++|+++|+++|++||.|.+|+|++|. ++++ + |||||.|.+ .+ +|.. |++.+
T Consensus 90 ~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~-~g~s-k---------g~afV~F~~-~e------~A~~--Ai~~l 149 (562)
T TIGR01628 90 NIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDE-NGKS-R---------GYGFVHFEK-EE------SAKA--AIQKV 149 (562)
T ss_pred ceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecC-CCCc-c---------cEEEEEECC-HH------HHHH--HHHHh
Confidence 46789999999999999999999999999999986 4445 5 999999999 56 6888 99888
Q ss_pred CCC--CCccccccC-Cccccc---CCCCCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCC-CCCceEEEEEeCCH
Q 017897 156 GYS--QGKRRMNCR-TSNAQQ---DEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP-NSVLRFAFVEFTDE 228 (364)
Q Consensus 156 ~~~--~g~~~~~~~-~~~~~~---~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~-~~~rG~aFV~F~~~ 228 (364)
++. .|+...... .....+ .....++|||+|||.++|+++|+++|+.||.|.++.++.+. +.++|||||+|.+.
T Consensus 150 ng~~~~~~~i~v~~~~~~~~~~~~~~~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~~g~~~G~afV~F~~~ 229 (562)
T TIGR01628 150 NGMLLNDKEVYVGRFIKKHEREAAPLKKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDGSGRSRGFAFVNFEKH 229 (562)
T ss_pred cccEecCceEEEeccccccccccccccCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCH
Confidence 776 555411111 111111 22345679999999999999999999999999999999886 45799999999999
Q ss_pred HHHHHHHH-ccccccC----CeeEEEeeCCCCCCCC---CCCCCC-CCccccccCceEEEEeCCCCCCCHHHHHHHhhhc
Q 017897 229 EGARAALS-LAGTMLG----FYPVRVLPSKTAIAPV---NPTFLP-RSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESV 299 (364)
Q Consensus 229 ~~A~~al~-l~g~~l~----g~~i~V~~a~~~~~~~---~~~~~~-~~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~~ 299 (364)
++|.+|++ +++..+. |+.|.|.++....... ...+.. ...........+|||+||+..+++++|+++|++|
T Consensus 230 e~A~~Av~~l~g~~i~~~~~g~~l~v~~a~~k~er~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~ 309 (562)
T TIGR01628 230 EDAAKAVEEMNGKKIGLAKEGKKLYVGRAQKRAEREAELRRKFEELQQERKMKAQGVNLYVKNLDDTVTDEKLRELFSEC 309 (562)
T ss_pred HHHHHHHHHhCCcEecccccceeeEeecccChhhhHHHHHhhHHhhhhhhhcccCCCEEEEeCCCCccCHHHHHHHHHhc
Confidence 99999998 9999999 9999999875321110 000000 0000113346789999999999999999999997
Q ss_pred CCceeEEEEeccC-CCCeeEEEEEecCHHHHHHHHh-cCCCeeCCeeeEEeecCCC
Q 017897 300 CGEVQRLRLLGDY-QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSPSKTP 353 (364)
Q Consensus 300 ~G~I~~v~i~~d~-~~~kg~afV~F~~~e~A~~Al~-lng~~~~g~~l~V~~ak~~ 353 (364)
|.|.+|+++.+. +.++|||||+|.+.++|.+|+. |||..++|++|.|.|++.+
T Consensus 310 -G~i~~~~i~~d~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a~~k 364 (562)
T TIGR01628 310 -GEITSAKVMLDEKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALAQRK 364 (562)
T ss_pred -CCeEEEEEEECCCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEeccCc
Confidence 999999999986 7899999999999999999999 9999999999999999865
No 7
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=100.00 E-value=1.9e-34 Score=289.20 Aligned_cols=244 Identities=20% Similarity=0.196 Sum_probs=192.5
Q ss_pred hcccCCccccccHHHHHHHHhccCCcceEEecCCCCCCcccccCCCCCCCCCeEEeeecccCCCCCccccccchhhhhhc
Q 017897 76 ERKMGESFKDCEMRDLVDMLSKLNPMAAEFVPPSLANGQIFNFNPAFFGPNGFGYTNNFIMHTDGTANTNGHTTTRRKRN 155 (364)
Q Consensus 76 ~~~~g~~~~~~~~~~L~~~Fs~~G~i~~v~v~~d~~t~~s~~~~~~~~~~~GfaFV~f~~~~~~~~~~~~a~~~~a~~~~ 155 (364)
-.++|+|+|++++++|+++|++||+|.+|+|+++ + |||||+|.+ .+ +|.. |++.+
T Consensus 4 vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~-------k---------~~afVef~~-~e------~A~~--Ai~~~ 58 (481)
T TIGR01649 4 VVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPG-------K---------RQALVEFED-EE------SAKA--CVNFA 58 (481)
T ss_pred EEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECC-------C---------CEEEEEeCc-hH------HHHH--HHHHh
Confidence 3578999999999999999999999999999863 5 999999999 66 5888 88754
Q ss_pred --CCC--CCccccccCCccccc-----C---------CCCCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCC
Q 017897 156 --GYS--QGKRRMNCRTSNAQQ-----D---------EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSV 217 (364)
Q Consensus 156 --~~~--~g~~~~~~~~~~~~~-----~---------~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~~~~ 217 (364)
+.. .|++ +++.++.. . .....+|||+||+..+|+++|+++|+.||.|.+|.++++.+
T Consensus 59 ~~~~~~l~g~~---l~v~~s~~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~~-- 133 (481)
T TIGR01649 59 TSVPIYIRGQP---AFFNYSTSQEIKRDGNSDFDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKNN-- 133 (481)
T ss_pred hcCCceEcCeE---EEEEecCCcccccCCCCcccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecCC--
Confidence 322 6776 33322211 0 11123699999999999999999999999999999987654
Q ss_pred ceEEEEEeCCHHHHHHHHH-ccccccCC--eeEEEeeCCCCCCC------CC-----CCC----------------C---
Q 017897 218 LRFAFVEFTDEEGARAALS-LAGTMLGF--YPVRVLPSKTAIAP------VN-----PTF----------------L--- 264 (364)
Q Consensus 218 rG~aFV~F~~~~~A~~al~-l~g~~l~g--~~i~V~~a~~~~~~------~~-----~~~----------------~--- 264 (364)
+|+|||+|.+.++|.+|++ |||..|.| +.|+|.|++..... .. +.. .
T Consensus 134 ~~~afVef~~~~~A~~A~~~Lng~~i~~~~~~l~v~~sk~~~l~v~~~~~~s~dyt~~~l~~~~~~~~~~~~~~~~~~~~ 213 (481)
T TIGR01649 134 VFQALVEFESVNSAQHAKAALNGADIYNGCCTLKIEYAKPTRLNVKYNDDDSRDYTNPDLPGRRDPGLDQTHRQRQPALL 213 (481)
T ss_pred ceEEEEEECCHHHHHHHHHHhcCCcccCCceEEEEEEecCCCceeEecccCCCCCcCCCCCCCCCCCcCccccccccccc
Confidence 4799999999999999998 99999854 58888887641100 00 000 0
Q ss_pred ----------------------------------CCC-----------------ccccccCceEEEEeCCCC-CCCHHHH
Q 017897 265 ----------------------------------PRS-----------------EDEREMCSRTIYCTNIDK-KVTQGDI 292 (364)
Q Consensus 265 ----------------------------------~~~-----------------~~~~~~~~~~l~V~nLp~-~~tee~L 292 (364)
+.. ......+.++|||+|||+ .+++++|
T Consensus 214 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~~~vt~~~L 293 (481)
T TIGR01649 214 GQHPSSYGHDGYSSHGGPLAPLAGGDRMGPPHGPPSRYRPAYEAAPLAPAISSYGPAGGGPGSVLMVSGLHQEKVNCDRL 293 (481)
T ss_pred cCCCccCCCcccccCCCCCCcccccccCCCcccCCCCCcccccccccCccccccCCCCCCCCCEEEEeCCCCCCCCHHHH
Confidence 000 000013567999999998 6999999
Q ss_pred HHHhhhcCCceeEEEEeccCCCCeeEEEEEecCHHHHHHHHh-cCCCeeCCeeeEEeecCCC
Q 017897 293 KLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSPSKTP 353 (364)
Q Consensus 293 ~~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~e~A~~Al~-lng~~~~g~~l~V~~ak~~ 353 (364)
+++|++| |.|.+|++++++ +|+|||+|.+.++|..||. |||..|.|+.|+|.+++..
T Consensus 294 ~~lF~~y-G~V~~vki~~~~---~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~~ 351 (481)
T TIGR01649 294 FNLFCVY-GNVERVKFMKNK---KETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQQ 351 (481)
T ss_pred HHHHHhc-CCeEEEEEEeCC---CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcccc
Confidence 9999997 999999999873 5899999999999999999 9999999999999998654
No 8
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.3e-34 Score=255.58 Aligned_cols=232 Identities=22% Similarity=0.279 Sum_probs=192.3
Q ss_pred ccchhcccCCccccccHHHHHHHHhccCCcceEEecCCCCCCcccccCCCCCCCCCeEEeeecccCCCCCccccccchhh
Q 017897 72 DNHMERKMGESFKDCEMRDLVDMLSKLNPMAAEFVPPSLANGQIFNFNPAFFGPNGFGYTNNFIMHTDGTANTNGHTTTR 151 (364)
Q Consensus 72 ~~~~~~~~g~~~~~~~~~~L~~~Fs~~G~i~~v~v~~d~~t~~s~~~~~~~~~~~GfaFV~f~~~~~~~~~~~~a~~~~a 151 (364)
+..+.+++|.|+-+.|++-|..||+++|+|.+|+|+.|-. + |+....+. .
T Consensus 4 ~~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~e~---------------~---v~wa~~p~--------n---- 53 (321)
T KOG0148|consen 4 DEPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFDEL---------------K---VNWATAPG--------N---- 53 (321)
T ss_pred CCCceEEeeccChhhHHHHHHHHHHhccccccceeehhhh---------------c---cccccCcc--------c----
Confidence 3456778999999999999999999999999999999822 1 11111000 0
Q ss_pred hhhcCCCCCccccccCCcccccCCCCCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEeCCHH
Q 017897 152 RKRNGYSQGKRRMNCRTSNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEE 229 (364)
Q Consensus 152 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~~--~~rG~aFV~F~~~~ 229 (364)
+-++ .......+||+.|.++++.++|++.|.+||+|.+++|++|.. ++||||||.|-..+
T Consensus 54 -------Qsk~-----------t~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~ 115 (321)
T KOG0148|consen 54 -------QSKP-----------TSNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKE 115 (321)
T ss_pred -------CCCC-----------ccccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchH
Confidence 1122 122356799999999999999999999999999999999985 58999999999999
Q ss_pred HHHHHHH-ccccccCCeeEEEeeCCCCCCCCCCCCCCCCcc----ccccCceEEEEeCCCCCCCHHHHHHHhhhcCCcee
Q 017897 230 GARAALS-LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSED----EREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQ 304 (364)
Q Consensus 230 ~A~~al~-l~g~~l~g~~i~V~~a~~~~~~~~~~~~~~~~~----~~~~~~~~l~V~nLp~~~tee~L~~~F~~~~G~I~ 304 (364)
+|+.||. |||+.|++|.|+-.|+.......+. .+...+ +....+++|||+||+..++|++|++.|++| |.|.
T Consensus 116 dAEnAI~~MnGqWlG~R~IRTNWATRKp~e~n~--~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~f-G~I~ 192 (321)
T KOG0148|consen 116 DAENAIQQMNGQWLGRRTIRTNWATRKPSEMNG--KPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPF-GPIQ 192 (321)
T ss_pred HHHHHHHHhCCeeeccceeeccccccCccccCC--CCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccC-Ccce
Confidence 9999998 9999999999999999754422221 112222 236678999999999999999999999997 9999
Q ss_pred EEEEeccCCCCeeEEEEEecCHHHHHHHHh-cCCCeeCCeeeEEeecCCCCCCCC
Q 017897 305 RLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSPSKTPVRPRA 358 (364)
Q Consensus 305 ~v~i~~d~~~~kg~afV~F~~~e~A~~Al~-lng~~~~g~~l~V~~ak~~~~~~~ 358 (364)
.|++.++++ |+||.|++.|+|.+||. +|+.+++|+.++++|.|+.....+
T Consensus 193 EVRvFk~qG----YaFVrF~tkEaAahAIv~mNntei~G~~VkCsWGKe~~~~~~ 243 (321)
T KOG0148|consen 193 EVRVFKDQG----YAFVRFETKEAAAHAIVQMNNTEIGGQLVRCSWGKEGDDGIN 243 (321)
T ss_pred EEEEecccc----eEEEEecchhhHHHHHHHhcCceeCceEEEEeccccCCCCCC
Confidence 999999874 99999999999999999 999999999999999998765544
No 9
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=100.00 E-value=3.5e-34 Score=287.28 Aligned_cols=251 Identities=18% Similarity=0.196 Sum_probs=197.1
Q ss_pred hcccCCccccccHHHHHHHHhccCCcceEEecCCCCCCcccccCCCCCCCCCeEEeeecccCCCCCccccccchhhhhhc
Q 017897 76 ERKMGESFKDCEMRDLVDMLSKLNPMAAEFVPPSLANGQIFNFNPAFFGPNGFGYTNNFIMHTDGTANTNGHTTTRRKRN 155 (364)
Q Consensus 76 ~~~~g~~~~~~~~~~L~~~Fs~~G~i~~v~v~~d~~t~~s~~~~~~~~~~~GfaFV~f~~~~~~~~~~~~a~~~~a~~~~ 155 (364)
...+++|+|.+|+++|+++|++||+|.+|.|+++.. . |+|||+|.+ .+ +|.+ |++.+
T Consensus 98 ~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~~-----~---------~~afVef~~-~~------~A~~--A~~~L 154 (481)
T TIGR01649 98 RVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKNN-----V---------FQALVEFES-VN------SAQH--AKAAL 154 (481)
T ss_pred EEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecCC-----c---------eEEEEEECC-HH------HHHH--HHHHh
Confidence 456799999999999999999999999999987532 3 799999999 66 6888 88888
Q ss_pred CCC--CCc-c----------ccccCCcccc--------------------------------------------------
Q 017897 156 GYS--QGK-R----------RMNCRTSNAQ-------------------------------------------------- 172 (364)
Q Consensus 156 ~~~--~g~-~----------~~~~~~~~~~-------------------------------------------------- 172 (364)
|+. .+. . .++++....+
T Consensus 155 ng~~i~~~~~~l~v~~sk~~~l~v~~~~~~s~dyt~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 234 (481)
T TIGR01649 155 NGADIYNGCCTLKIEYAKPTRLNVKYNDDDSRDYTNPDLPGRRDPGLDQTHRQRQPALLGQHPSSYGHDGYSSHGGPLAP 234 (481)
T ss_pred cCCcccCCceEEEEEEecCCCceeEecccCCCCCcCCCCCCCCCCCcCccccccccccccCCCccCCCcccccCCCCCCc
Confidence 776 221 1 1111000000
Q ss_pred -----------------------------------cCCCCCcEEEEeCCCC-CCcHHHHHHHhhcCCCeeEEEEecCCCC
Q 017897 173 -----------------------------------QDEVIRRTVYVSDIDQ-QVTEEQLATLFLTCGQVVDCRICGDPNS 216 (364)
Q Consensus 173 -----------------------------------~~~~~~~~lfV~nLp~-~~te~~L~~~F~~~G~i~~~~i~~d~~~ 216 (364)
......++|||+|||+ .+|+++|+++|+.||.|.+|+++.++
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~-- 312 (481)
T TIGR01649 235 LAGGDRMGPPHGPPSRYRPAYEAAPLAPAISSYGPAGGGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK-- 312 (481)
T ss_pred ccccccCCCcccCCCCCcccccccccCccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC--
Confidence 0011346899999998 69999999999999999999999874
Q ss_pred CceEEEEEeCCHHHHHHHHH-ccccccCCeeEEEeeCCCCCCCCCCC------------CCCC------Ccc-----ccc
Q 017897 217 VLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSKTAIAPVNPT------------FLPR------SED-----ERE 272 (364)
Q Consensus 217 ~rG~aFV~F~~~~~A~~al~-l~g~~l~g~~i~V~~a~~~~~~~~~~------------~~~~------~~~-----~~~ 272 (364)
+|||||+|.+.++|..||+ |+|..|.|++|+|.+++......... +... ... ...
T Consensus 313 -~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~~~~~ 391 (481)
T TIGR01649 313 -KETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQQNVQPPREGQLDDGLTSYKDYSSSRNHRFKKPGSANKNNIQ 391 (481)
T ss_pred -CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcccccccCCCCCcCcCCCcccccccCCccccCCCcccccccccC
Confidence 5899999999999999998 99999999999999875432110000 0000 000 012
Q ss_pred cCceEEEEeCCCCCCCHHHHHHHhhhcCCc--eeEEEEeccCCCCeeEEEEEecCHHHHHHHHh-cCCCeeCCee-----
Q 017897 273 MCSRTIYCTNIDKKVTQGDIKLFFESVCGE--VQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLP----- 344 (364)
Q Consensus 273 ~~~~~l~V~nLp~~~tee~L~~~F~~~~G~--I~~v~i~~d~~~~kg~afV~F~~~e~A~~Al~-lng~~~~g~~----- 344 (364)
.+..+|||+|||..+++++|+++|++| |. |..+++....+..+++|||+|.+.++|..||. ||+..|.++.
T Consensus 392 ~ps~~L~v~NLp~~~tee~L~~lF~~~-G~~~i~~ik~~~~~~~~~~~gfVeF~~~e~A~~Al~~ln~~~l~~~~~~~~~ 470 (481)
T TIGR01649 392 PPSATLHLSNIPLSVSEEDLKELFAEN-GVHKVKKFKFFPKDNERSKMGLLEWESVEDAVEALIALNHHQLNEPNGSAPY 470 (481)
T ss_pred CCCcEEEEecCCCCCCHHHHHHHHHhc-CCccceEEEEecCCCCcceeEEEEcCCHHHHHHHHHHhcCCccCCCCCCccc
Confidence 356799999999999999999999997 97 88998877655568899999999999999999 9999999985
Q ss_pred -eEEeecCCC
Q 017897 345 -IRVSPSKTP 353 (364)
Q Consensus 345 -l~V~~ak~~ 353 (364)
|+|+|++++
T Consensus 471 ~lkv~fs~~~ 480 (481)
T TIGR01649 471 HLKVSFSTSR 480 (481)
T ss_pred eEEEEeccCC
Confidence 999999875
No 10
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=100.00 E-value=3.3e-34 Score=286.54 Aligned_cols=256 Identities=20% Similarity=0.258 Sum_probs=201.5
Q ss_pred hhcccCCccccccHHHHHHHHhccCCcceEEecCCCCCCcccccCCCCCCCCCeEEeeecccCCCCCccccccchhhhhh
Q 017897 75 MERKMGESFKDCEMRDLVDMLSKLNPMAAEFVPPSLANGQIFNFNPAFFGPNGFGYTNNFIMHTDGTANTNGHTTTRRKR 154 (364)
Q Consensus 75 ~~~~~g~~~~~~~~~~L~~~Fs~~G~i~~v~v~~d~~t~~s~~~~~~~~~~~GfaFV~f~~~~~~~~~~~~a~~~~a~~~ 154 (364)
...++++|++++++++|+++|++||+|.+|+|++|+.++++ + |||||.|.+ .+ +|.+ |+..
T Consensus 90 ~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~s-k---------g~afVeF~~-~e------~A~~--Al~l 150 (457)
T TIGR01622 90 RTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRS-K---------GVAYVEFYD-VE------SVIK--ALAL 150 (457)
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCc-c---------eEEEEEECC-HH------HHHH--HHHh
Confidence 45788999999999999999999999999999999999988 8 999999999 56 6888 8864
Q ss_pred cCCC-CCccccccCCcccc------------cCCCCCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCCC--CCce
Q 017897 155 NGYS-QGKRRMNCRTSNAQ------------QDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLR 219 (364)
Q Consensus 155 ~~~~-~g~~~~~~~~~~~~------------~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~~--~~rG 219 (364)
.+.. .|++ +.+...... ......++|||+|||..+++++|+++|+.||.|..|.++.++. .++|
T Consensus 151 ~g~~~~g~~-i~v~~~~~~~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g 229 (457)
T TIGR01622 151 TGQMLLGRP-IIVQSSQAEKNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKG 229 (457)
T ss_pred CCCEECCee-eEEeecchhhhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccce
Confidence 4333 5555 222211110 0012257899999999999999999999999999999999874 4799
Q ss_pred EEEEEeCCHHHHHHHHH-ccccccCCeeEEEeeCCCCCCCC---------------------------------------
Q 017897 220 FAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSKTAIAPV--------------------------------------- 259 (364)
Q Consensus 220 ~aFV~F~~~~~A~~al~-l~g~~l~g~~i~V~~a~~~~~~~--------------------------------------- 259 (364)
||||+|.+.++|.+|++ |+|..|.|++|.|.++.......
T Consensus 230 ~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (457)
T TIGR01622 230 FGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQDSTYLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGG 309 (457)
T ss_pred EEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEccCCCccccchhhhccccccccCCcCCCccchHHHHHhhccCCCCcc
Confidence 99999999999999998 99999999999999954210000
Q ss_pred ---CCC------------------CCC--------------CCc--cccccCceEEEEeCCCCCCC----------HHHH
Q 017897 260 ---NPT------------------FLP--------------RSE--DEREMCSRTIYCTNIDKKVT----------QGDI 292 (364)
Q Consensus 260 ---~~~------------------~~~--------------~~~--~~~~~~~~~l~V~nLp~~~t----------ee~L 292 (364)
.+. ..+ ... .......++|+|.||....+ .+||
T Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~dv 389 (457)
T TIGR01622 310 LLIPGTGSKIALMQKLQRDGIIDPNIPSRYATGALAIMARNSFVPSTNNNLATTCLVLSNMFDPATEEEPNFDNEILDDV 389 (457)
T ss_pred ccCCCccchhhhhccccccccccccccccccccccccccCCCCCCcccCCCCCcEEEEecCCCCcccccchHHHHHHHHH
Confidence 000 000 000 00124568999999965444 3689
Q ss_pred HHHhhhcCCceeEEEEeccCCCCeeEEEEEecCHHHHHHHHh-cCCCeeCCeeeEEeecCCC
Q 017897 293 KLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSPSKTP 353 (364)
Q Consensus 293 ~~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~e~A~~Al~-lng~~~~g~~l~V~~ak~~ 353 (364)
++.|++| |.|..|.|... ...|++||+|.++++|.+|+. |||..|+|+.|.|.+....
T Consensus 390 ~~e~~k~-G~v~~v~v~~~--~~~G~~fV~F~~~e~A~~A~~~lnGr~f~gr~i~~~~~~~~ 448 (457)
T TIGR01622 390 KEECSKY-GGVVHIYVDTK--NSAGKIYLKFSSVDAALAAFQALNGRYFGGKMITAAFVVND 448 (457)
T ss_pred HHHHHhc-CCeeEEEEeCC--CCceeEEEEECCHHHHHHHHHHhcCcccCCeEEEEEEEcHH
Confidence 9999997 99999998743 356899999999999999999 9999999999999997553
No 11
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=2.3e-35 Score=274.78 Aligned_cols=268 Identities=21% Similarity=0.334 Sum_probs=217.2
Q ss_pred cCccchhcccCCccccccHHHHHHHHhccCCcceEEecCCCCCCcccccCCCCCCCCCeEEeeecccCCCCCccccccch
Q 017897 70 ASDNHMERKMGESFKDCEMRDLVDMLSKLNPMAAEFVPPSLANGQIFNFNPAFFGPNGFGYTNNFIMHTDGTANTNGHTT 149 (364)
Q Consensus 70 ~~~~~~~~~~g~~~~~~~~~~L~~~Fs~~G~i~~v~v~~d~~t~~s~~~~~~~~~~~GfaFV~f~~~~~~~~~~~~a~~~ 149 (364)
..+..+++++|-++...+|+||+++|++||.|.+|.|++|+.|+.+ + |||||.|++ .. +|..
T Consensus 30 ~d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s-~---------gcCFv~~~t-rk------~a~~- 91 (510)
T KOG0144|consen 30 PDGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQS-K---------GCCFVKYYT-RK------EADE- 91 (510)
T ss_pred CCchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcc-c---------ceEEEEecc-HH------HHHH-
Confidence 3455678999999999999999999999999999999999999999 8 999999999 45 3666
Q ss_pred hhhhhcCCC---CCcc-ccccCCcccccCC-CCCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCC-CCCceEEEE
Q 017897 150 TRRKRNGYS---QGKR-RMNCRTSNAQQDE-VIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP-NSVLRFAFV 223 (364)
Q Consensus 150 ~a~~~~~~~---~g~~-~~~~~~~~~~~~~-~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~-~~~rG~aFV 223 (364)
|+..++.. .|-. .+.++....+++. ...++||||.|+..+||.+++++|++||.|++|+|++|. +.+||||||
T Consensus 92 -a~~Alhn~ktlpG~~~pvqvk~Ad~E~er~~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV 170 (510)
T KOG0144|consen 92 -AINALHNQKTLPGMHHPVQVKYADGERERIVEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFV 170 (510)
T ss_pred -HHHHhhcccccCCCCcceeecccchhhhccccchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEE
Confidence 66655544 4444 4445544443322 247899999999999999999999999999999999988 468999999
Q ss_pred EeCCHHHHHHHHH-ccccc-cCCe--eEEEeeCCCCC-------------------------------------------
Q 017897 224 EFTDEEGARAALS-LAGTM-LGFY--PVRVLPSKTAI------------------------------------------- 256 (364)
Q Consensus 224 ~F~~~~~A~~al~-l~g~~-l~g~--~i~V~~a~~~~------------------------------------------- 256 (364)
+|.+.+-|..||+ |||.. +.|+ +|.|+|+++..
T Consensus 171 ~fstke~A~~Aika~ng~~tmeGcs~PLVVkFADtqkdk~~~~lqq~~~~~~qql~~~~~~~n~~~~~~l~~~~~~~~Qq 250 (510)
T KOG0144|consen 171 KFSTKEMAVAAIKALNGTQTMEGCSQPLVVKFADTQKDKDGKRLQQLNPALLQQLGNGQNPQNLASLGALSNGYQGPQQQ 250 (510)
T ss_pred EEehHHHHHHHHHhhccceeeccCCCceEEEecccCCCchHHHHHhhhHHHHHHhcCCCCccchhhhhccCcccCchhhh
Confidence 9999999999998 99864 7775 89999997500
Q ss_pred -------------CCCCC---------------------------------C----------------------------
Q 017897 257 -------------APVNP---------------------------------T---------------------------- 262 (364)
Q Consensus 257 -------------~~~~~---------------------------------~---------------------------- 262 (364)
.+.++ .
T Consensus 251 ~~~sqn~g~l~g~~~L~~l~a~~~qq~~~~~~~~ta~q~~~~s~q~~pl~~qts~~~~~~~~~~~~~~ss~~~~s~~~~a 330 (510)
T KOG0144|consen 251 TQQSQNVGTLGGLPPLGPLNATQLQQAAALAAAATAAQKTASSTQGLPLRTQTSFPGSQTSPQSASAPSSSLSTSQNPLA 330 (510)
T ss_pred ccccCCCcccccccCCCCcchhHHHHHHHhhhhcccccCCCCCcccCccccccCCccccCCCccccCccccCcccccchh
Confidence 00000 0
Q ss_pred -------C----------------------------------CCC-----------------------------------
Q 017897 263 -------F----------------------------------LPR----------------------------------- 266 (364)
Q Consensus 263 -------~----------------------------------~~~----------------------------------- 266 (364)
+ .|.
T Consensus 331 q~~~~q~~p~t~~~~n~~~~~a~a~~~sp~aa~~~~lq~~~ltp~~~~~~~~~tQa~q~~~q~a~~a~~~l~~q~~~~qq 410 (510)
T KOG0144|consen 331 QLGARQTFPGTPANYNLAGGMAGAGTTSPVAASLANLQQIGLTPFAGAAALDHTQAMQQYAQSANLAAPGLVGQQATTQQ 410 (510)
T ss_pred hhhHhhcCCCCchhcccccccccccccCcccccccccccccCCChhhhhhHhHHHhhhHhhhhhhhcccchhhhhHhhhh
Confidence 0 000
Q ss_pred -----CccccccCceEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccC--CCCeeEEEEEecCHHHHHHHHh-cCCC
Q 017897 267 -----SEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGA 338 (364)
Q Consensus 267 -----~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~--~~~kg~afV~F~~~e~A~~Al~-lng~ 338 (364)
..+.+.+.+..|||.+||.+.-+.+|-..|.+| |.|.+.++.-|+ +-+++|+||.|++..+|..||. |||+
T Consensus 411 ~~~~~~~q~eGpeGanlfiyhlPqefgdq~l~~~f~pf-G~Vlsakvfidk~tnlskcfgfvSyen~~sa~~aI~amngf 489 (510)
T KOG0144|consen 411 AQMVGNGQVEGPEGANLFIYHLPQEFGDQDLIATFQPF-GGVLSAKVFIDKVTNLSKCFGFVSYENAQSAQNAISAMNGF 489 (510)
T ss_pred hhcccCccccCCCccceeeeeCchhhhhHHHHHHhccc-cceeEEEEEEecccCHhhhcCcccccchhhhHHHHHHhcch
Confidence 000012345689999999999999999999997 999999999886 6799999999999999999999 9999
Q ss_pred eeCCeeeEEeecCCCCCCC
Q 017897 339 VLGSLPIRVSPSKTPVRPR 357 (364)
Q Consensus 339 ~~~g~~l~V~~ak~~~~~~ 357 (364)
.++.++|+|...+.+..+.
T Consensus 490 Qig~KrlkVQlk~~~~np~ 508 (510)
T KOG0144|consen 490 QIGSKRLKVQLKRDRNNPY 508 (510)
T ss_pred hhccccceEEeeeccCCCC
Confidence 9999999999988775543
No 12
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.2e-34 Score=276.52 Aligned_cols=233 Identities=22% Similarity=0.376 Sum_probs=210.3
Q ss_pred ccccHHHHHHHHhccCCcceEEecCCCCCCcccccCCCCCCCCCeEEeeecccCCCCCccccccchhhhhhcCCC--CCc
Q 017897 84 KDCEMRDLVDMLSKLNPMAAEFVPPSLANGQIFNFNPAFFGPNGFGYTNNFIMHTDGTANTNGHTTTRRKRNGYS--QGK 161 (364)
Q Consensus 84 ~~~~~~~L~~~Fs~~G~i~~v~v~~d~~t~~s~~~~~~~~~~~GfaFV~f~~~~~~~~~~~~a~~~~a~~~~~~~--~g~ 161 (364)
.++++.+|++.|+++|+|++++|++|. | | + |||||+|.+ +. ||++ |++.+|+. .|+
T Consensus 8 ~~v~e~~l~~~f~~~~~v~s~rvc~d~-t--s-l---------gy~yvnf~~-~~------da~~--A~~~~n~~~~~~~ 65 (369)
T KOG0123|consen 8 PDVTEAMLFDKFSPAGPVLSIRVCRDA-T--S-L---------GYAYVNFQQ-PA------DAER--ALDTMNFDVLKGK 65 (369)
T ss_pred CcCChHHHHHHhcccCCceeEEEeecC-C--c-c---------ceEEEecCC-HH------HHHH--HHHHcCCcccCCc
Confidence 788999999999999999999999999 7 7 6 999999999 78 8999 99999998 999
Q ss_pred cccccCCcccccCCCCCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-cccc
Q 017897 162 RRMNCRTSNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGT 240 (364)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~~~~rG~aFV~F~~~~~A~~al~-l~g~ 240 (364)
+ +|++|.++++.. |||.||+++++..+|.++|+.||+|++|++..|.+.++|| ||+|+++++|.+|++ +||.
T Consensus 66 ~---~rim~s~rd~~~---~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~ng~ 138 (369)
T KOG0123|consen 66 P---IRIMWSQRDPSL---VFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENGSKGY-FVQFESEESAKKAIEKLNGM 138 (369)
T ss_pred E---EEeehhccCCce---eeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCCceee-EEEeCCHHHHHHHHHHhcCc
Confidence 9 999999988765 9999999999999999999999999999999999889999 999999999999998 9999
Q ss_pred ccCCeeEEEeeCCCCCCCCCCCCCCCCccccccCceEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccC-CCCeeEE
Q 017897 241 MLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY-QHSTRIA 319 (364)
Q Consensus 241 ~l~g~~i~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~-~~~kg~a 319 (364)
.+.|++|.|...........+. .. .......+||+|++...+++.|..+|..+ |.|.++.++++. +++++|+
T Consensus 139 ll~~kki~vg~~~~~~er~~~~----~~--~~~~~t~v~vk~~~~~~~~~~l~~~f~~~-g~i~s~~v~~~~~g~~~~~g 211 (369)
T KOG0123|consen 139 LLNGKKIYVGLFERKEEREAPL----GE--YKKRFTNVYVKNLEEDSTDEELKDLFSAY-GSITSVAVMRDSIGKSKGFG 211 (369)
T ss_pred ccCCCeeEEeeccchhhhcccc----cc--hhhhhhhhheeccccccchHHHHHhhccc-CcceEEEEeecCCCCCCCcc
Confidence 9999999998864321111111 11 23445789999999999999999999997 999999999986 6789999
Q ss_pred EEEecCHHHHHHHHh-cCCCeeCCeeeEEeecCC
Q 017897 320 FVEFAMAESAIAALN-CSGAVLGSLPIRVSPSKT 352 (364)
Q Consensus 320 fV~F~~~e~A~~Al~-lng~~~~g~~l~V~~ak~ 352 (364)
||.|.++++|..|+. |++..+++..+.|..+..
T Consensus 212 fv~f~~~e~a~~av~~l~~~~~~~~~~~V~~aqk 245 (369)
T KOG0123|consen 212 FVNFENPEDAKKAVETLNGKIFGDKELYVGRAQK 245 (369)
T ss_pred ceeecChhHHHHHHHhccCCcCCccceeeccccc
Confidence 999999999999999 999999999999998876
No 13
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=4.2e-33 Score=266.05 Aligned_cols=256 Identities=20% Similarity=0.300 Sum_probs=203.7
Q ss_pred hcccCCccccccHHHHHHHHhccCCcceEEecCCCCCCcccccCCCCCCCCCeEEeeecccCCCCCccccccchhhhhhc
Q 017897 76 ERKMGESFKDCEMRDLVDMLSKLNPMAAEFVPPSLANGQIFNFNPAFFGPNGFGYTNNFIMHTDGTANTNGHTTTRRKRN 155 (364)
Q Consensus 76 ~~~~g~~~~~~~~~~L~~~Fs~~G~i~~v~v~~d~~t~~s~~~~~~~~~~~GfaFV~f~~~~~~~~~~~~a~~~~a~~~~ 155 (364)
.+++++|+|.++.++|.++||.+|||..|.|..++.++.+ | |||||+|+- .+ |+++ |++..
T Consensus 7 TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~-R---------GfgfVtFam-~E------D~qr--A~~e~ 67 (678)
T KOG0127|consen 7 TLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEK-R---------GFGFVTFAM-EE------DVQR--ALAET 67 (678)
T ss_pred eEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccc-c---------Cccceeeeh-Hh------HHHH--HHHHh
Confidence 5678999999999999999999999999999999999888 8 999999998 67 7999 88777
Q ss_pred CCC--CCccccccCCcc--c--c--------------------cC--CCCCcEEEEeCCCCCCcHHHHHHHhhcCCCeeE
Q 017897 156 GYS--QGKRRMNCRTSN--A--Q--------------------QD--EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVD 207 (364)
Q Consensus 156 ~~~--~g~~~~~~~~~~--~--~--------------------~~--~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~ 207 (364)
... .|+. +++.+.. . + +. ......|+|+|||+.+.+.+|+.+|+.||.|.+
T Consensus 68 ~~~kf~Gr~-l~v~~A~~R~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~E 146 (678)
T KOG0127|consen 68 EQSKFEGRI-LNVDPAKKRARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVE 146 (678)
T ss_pred hcCccccee-cccccccccccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEE
Confidence 664 4444 2222110 0 0 01 111457999999999999999999999999999
Q ss_pred EEEecCCCC-CceEEEEEeCCHHHHHHHHH-ccccccCCeeEEEeeCCCCC--CC-------------------C--C--
Q 017897 208 CRICGDPNS-VLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSKTAI--AP-------------------V--N-- 260 (364)
Q Consensus 208 ~~i~~d~~~-~rG~aFV~F~~~~~A~~al~-l~g~~l~g~~i~V~~a~~~~--~~-------------------~--~-- 260 (364)
|.|++.++. -+|||||.|.+..+|..||+ +|+..|.||+|-|.|+-... .. . .
T Consensus 147 i~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~ 226 (678)
T KOG0127|consen 147 IVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDKDTYEDTAHEEKQSLKKAVKEEEDKEADEDD 226 (678)
T ss_pred EEcccCCCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeecccccccccchhhhhhhhhccchhhhccccccc
Confidence 999986643 36999999999999999999 99999999999999974310 00 0 0
Q ss_pred -CCC-------CC-----------------C------Cc--------------------cccccCceEEEEeCCCCCCCH
Q 017897 261 -PTF-------LP-----------------R------SE--------------------DEREMCSRTIYCTNIDKKVTQ 289 (364)
Q Consensus 261 -~~~-------~~-----------------~------~~--------------------~~~~~~~~~l~V~nLp~~~te 289 (364)
..+ .. . .. ++...-.++|||+|||+.+++
T Consensus 227 ~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~~~k~~q~k~~~en~~~~~tVFvRNL~fD~tE 306 (678)
T KOG0127|consen 227 GKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSGKKESDKKAQNKTTRENITEGKTVFVRNLPFDTTE 306 (678)
T ss_pred ccccchhcccccccccccccccchhhhccccccccccccccccccccCcccchhccccccccccccceEEEecCCccccH
Confidence 000 00 0 00 000112479999999999999
Q ss_pred HHHHHHhhhcCCceeEEEEeccC--CCCeeEEEEEecCHHHHHHHHh-c-----CC-CeeCCeeeEEeecCC
Q 017897 290 GDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-C-----SG-AVLGSLPIRVSPSKT 352 (364)
Q Consensus 290 e~L~~~F~~~~G~I~~v~i~~d~--~~~kg~afV~F~~~e~A~~Al~-l-----ng-~~~~g~~l~V~~ak~ 352 (364)
++|.+.|++| |.|.++.|+.++ ++++|.|||.|.+..+|..||. . .| ..+.||.|+|..+-+
T Consensus 307 Eel~~~fskF-G~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR~Lkv~~Av~ 377 (678)
T KOG0127|consen 307 EELKEHFSKF-GEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGRLLKVTLAVT 377 (678)
T ss_pred HHHHHHHHhh-ccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEeccEEeeeeccc
Confidence 9999999997 999999999876 7899999999999999999998 4 23 688999999998754
No 14
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=100.00 E-value=1.6e-32 Score=277.86 Aligned_cols=251 Identities=14% Similarity=0.137 Sum_probs=189.4
Q ss_pred chhcccCCccccccHHHHHHHHhcc------------CCcceEEecCCCCCCcccccCCCCCCCCCeEEeeecccCCCCC
Q 017897 74 HMERKMGESFKDCEMRDLVDMLSKL------------NPMAAEFVPPSLANGQIFNFNPAFFGPNGFGYTNNFIMHTDGT 141 (364)
Q Consensus 74 ~~~~~~g~~~~~~~~~~L~~~Fs~~------------G~i~~v~v~~d~~t~~s~~~~~~~~~~~GfaFV~f~~~~~~~~ 141 (364)
.+.+++|+|+|++++++|+++|+++ ++|..+.+.+ . + |||||+|.+ .+
T Consensus 175 ~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~~------~-k---------g~afVeF~~-~e--- 234 (509)
T TIGR01642 175 ARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNINK------E-K---------NFAFLEFRT-VE--- 234 (509)
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEECC------C-C---------CEEEEEeCC-HH---
Confidence 4567899999999999999999985 3444444433 3 4 999999999 66
Q ss_pred ccccccchhhhhhcCCC--CCccccccCC--ccc---------------------------ccCCCCCcEEEEeCCCCCC
Q 017897 142 ANTNGHTTTRRKRNGYS--QGKRRMNCRT--SNA---------------------------QQDEVIRRTVYVSDIDQQV 190 (364)
Q Consensus 142 ~~~~a~~~~a~~~~~~~--~g~~~~~~~~--~~~---------------------------~~~~~~~~~lfV~nLp~~~ 190 (364)
+|.. |+. +++. .|++ +.++. .+. .......++|||+|||..+
T Consensus 235 ---~A~~--Al~-l~g~~~~g~~-l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~ 307 (509)
T TIGR01642 235 ---EATF--AMA-LDSIIYSNVF-LKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYL 307 (509)
T ss_pred ---HHhh--hhc-CCCeEeeCce-eEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCC
Confidence 5877 774 4443 4444 11110 000 0011234689999999999
Q ss_pred cHHHHHHHhhcCCCeeEEEEecCC--CCCceEEEEEeCCHHHHHHHHH-ccccccCCeeEEEeeCCCCCCCCCCCC----
Q 017897 191 TEEQLATLFLTCGQVVDCRICGDP--NSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSKTAIAPVNPTF---- 263 (364)
Q Consensus 191 te~~L~~~F~~~G~i~~~~i~~d~--~~~rG~aFV~F~~~~~A~~al~-l~g~~l~g~~i~V~~a~~~~~~~~~~~---- 263 (364)
++++|+++|+.||.|..+.++.++ +.++|||||+|.+.+.|..||+ |+|..|.|+.|.|.++...........
T Consensus 308 ~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~~~~~~~~~~~~~ 387 (509)
T TIGR01642 308 GEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVGANQATIDTSNGM 387 (509)
T ss_pred CHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccCCCCCCccccccc
Confidence 999999999999999999999986 4479999999999999999998 999999999999999854322111000
Q ss_pred -----CCCC-----ccccccCceEEEEeCCCCCC----------CHHHHHHHhhhcCCceeEEEEeccC-----CCCeeE
Q 017897 264 -----LPRS-----EDEREMCSRTIYCTNIDKKV----------TQGDIKLFFESVCGEVQRLRLLGDY-----QHSTRI 318 (364)
Q Consensus 264 -----~~~~-----~~~~~~~~~~l~V~nLp~~~----------tee~L~~~F~~~~G~I~~v~i~~d~-----~~~kg~ 318 (364)
.+.. ......+.++|+|.||...- ..++|+++|++| |.|..|.|+++. +.+.|+
T Consensus 388 ~~~~~~~~~~~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~-G~v~~v~i~~~~~~~~~~~~~G~ 466 (509)
T TIGR01642 388 APVTLLAKALSQSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKY-GPLINIVIPRPNGDRNSTPGVGK 466 (509)
T ss_pred cccccccccchhhhccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhc-CCeeEEEeeccCcCCCcCCCcce
Confidence 0000 00112356899999996421 136799999997 999999998752 345789
Q ss_pred EEEEecCHHHHHHHHh-cCCCeeCCeeeEEeecCC
Q 017897 319 AFVEFAMAESAIAALN-CSGAVLGSLPIRVSPSKT 352 (364)
Q Consensus 319 afV~F~~~e~A~~Al~-lng~~~~g~~l~V~~ak~ 352 (364)
+||+|.+.++|.+|+. |||..|+|+.|.|.|...
T Consensus 467 ~fV~F~~~e~A~~A~~~lnGr~~~gr~v~~~~~~~ 501 (509)
T TIGR01642 467 VFLEYADVRSAEKAMEGMNGRKFNDRVVVAAFYGE 501 (509)
T ss_pred EEEEECCHHHHHHHHHHcCCCEECCeEEEEEEeCH
Confidence 9999999999999999 999999999999999754
No 15
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=100.00 E-value=4e-32 Score=272.65 Aligned_cols=158 Identities=14% Similarity=0.272 Sum_probs=137.3
Q ss_pred chhcccCCccccccHHHHHHHHhccCCcceEEecCCCCCCcccccCCCCCCCCCeEEeeecccCCCCCccccccchhhhh
Q 017897 74 HMERKMGESFKDCEMRDLVDMLSKLNPMAAEFVPPSLANGQIFNFNPAFFGPNGFGYTNNFIMHTDGTANTNGHTTTRRK 153 (364)
Q Consensus 74 ~~~~~~g~~~~~~~~~~L~~~Fs~~G~i~~v~v~~d~~t~~s~~~~~~~~~~~GfaFV~f~~~~~~~~~~~~a~~~~a~~ 153 (364)
....++|+|+|++++++|+++|++||+|.+|++++|+.|+++ + |||||+|.+ .+ +|.+ |++
T Consensus 107 ~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~Tgks-k---------GfAFVeF~s-~e------~A~~--Ai~ 167 (612)
T TIGR01645 107 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKH-K---------GFAFVEYEV-PE------AAQL--ALE 167 (612)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCc-C---------CeEEEEeCc-HH------HHHH--HHH
Confidence 346788999999999999999999999999999999999998 8 999999999 66 6888 999
Q ss_pred hcCCC--CCccccccCCcccc-------------cCCCCCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCCC--C
Q 017897 154 RNGYS--QGKRRMNCRTSNAQ-------------QDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--S 216 (364)
Q Consensus 154 ~~~~~--~g~~~~~~~~~~~~-------------~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~~--~ 216 (364)
.+|+. .|+. +++.+.. ......++|||+|||+++++++|+++|+.||.|.+++|.+|+. +
T Consensus 168 ~lnG~~i~GR~---IkV~rp~~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgk 244 (612)
T TIGR01645 168 QMNGQMLGGRN---IKVGRPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRG 244 (612)
T ss_pred hcCCeEEecce---eeecccccccccccccccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCC
Confidence 88876 6666 2222111 1112346899999999999999999999999999999999874 4
Q ss_pred CceEEEEEeCCHHHHHHHHH-ccccccCCeeEEEeeCC
Q 017897 217 VLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSK 253 (364)
Q Consensus 217 ~rG~aFV~F~~~~~A~~al~-l~g~~l~g~~i~V~~a~ 253 (364)
+||||||+|.+.++|.+||+ ||+..++|+.|+|.++.
T Consensus 245 sKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi 282 (612)
T TIGR01645 245 HKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 282 (612)
T ss_pred cCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecC
Confidence 79999999999999999998 99999999999998864
No 16
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.98 E-value=4.6e-31 Score=252.23 Aligned_cols=168 Identities=23% Similarity=0.384 Sum_probs=149.2
Q ss_pred CCCCCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEeCCHHHHHHHHH-ccccccCCeeEEEe
Q 017897 174 DEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVL 250 (364)
Q Consensus 174 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~~--~~rG~aFV~F~~~~~A~~al~-l~g~~l~g~~i~V~ 250 (364)
.....++|||++||+++|+++|+++|+.||.|++|+|+.|+. +++|||||+|.++++|++||+ |++..+.+++|+|.
T Consensus 103 ~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~ 182 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVS 182 (346)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeee
Confidence 344578999999999999999999999999999999999874 479999999999999999997 99999999999999
Q ss_pred eCCCCCCCCCCCCCCCCccccccCceEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccC--CCCeeEEEEEecCHHH
Q 017897 251 PSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAES 328 (364)
Q Consensus 251 ~a~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~--~~~kg~afV~F~~~e~ 328 (364)
++++.. ......+|||.|||..+++++|+++|++| |.|..|.|++++ ++++|||||+|.++++
T Consensus 183 ~a~p~~--------------~~~~~~~lfV~nLp~~vtee~L~~~F~~f-G~V~~v~i~~d~~tg~~kG~aFV~F~~~e~ 247 (346)
T TIGR01659 183 YARPGG--------------ESIKDTNLYVTNLPRTITDDQLDTIFGKY-GQIVQKNILRDKLTGTPRGVAFVRFNKREE 247 (346)
T ss_pred cccccc--------------cccccceeEEeCCCCcccHHHHHHHHHhc-CCEEEEEEeecCCCCccceEEEEEECCHHH
Confidence 975321 01124689999999999999999999997 999999999885 6889999999999999
Q ss_pred HHHHHh-cCCCeeCC--eeeEEeecCCCCCC
Q 017897 329 AIAALN-CSGAVLGS--LPIRVSPSKTPVRP 356 (364)
Q Consensus 329 A~~Al~-lng~~~~g--~~l~V~~ak~~~~~ 356 (364)
|.+||+ ||+..+.+ ++|+|.|++.....
T Consensus 248 A~~Ai~~lng~~~~g~~~~l~V~~a~~~~~~ 278 (346)
T TIGR01659 248 AQEAISALNNVIPEGGSQPLTVRLAEEHGKA 278 (346)
T ss_pred HHHHHHHhCCCccCCCceeEEEEECCccccc
Confidence 999999 99998866 79999999876443
No 17
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.97 E-value=5e-30 Score=257.57 Aligned_cols=177 Identities=26% Similarity=0.360 Sum_probs=151.1
Q ss_pred CCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEeCCHHHHHHHHH-ccccccCCeeEEEeeCC
Q 017897 177 IRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSK 253 (364)
Q Consensus 177 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~~--~~rG~aFV~F~~~~~A~~al~-l~g~~l~g~~i~V~~a~ 253 (364)
..++|||||||+++++++|+++|++||.|.+|+++.|+. +++|||||+|.+.++|.+|++ +||..+.|++|+|.+..
T Consensus 106 ~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp~ 185 (612)
T TIGR01645 106 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPS 185 (612)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecccc
Confidence 458999999999999999999999999999999999874 579999999999999999998 99999999999998754
Q ss_pred CCCCCCCCCCCCCCccccccCceEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccC--CCCeeEEEEEecCHHHHHH
Q 017897 254 TAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIA 331 (364)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~--~~~kg~afV~F~~~e~A~~ 331 (364)
...... + .... ........++|||+|||+.+++++|+++|++| |.|.+|+|.++. ++++|||||+|.+.++|.+
T Consensus 186 ~~p~a~-~-~~~~-~~~~~~~~~rLfVgnLp~~vteedLk~lFs~F-G~I~svrl~~D~~tgksKGfGFVeFe~~e~A~k 261 (612)
T TIGR01645 186 NMPQAQ-P-IIDM-VQEEAKKFNRIYVASVHPDLSETDIKSVFEAF-GEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSE 261 (612)
T ss_pred cccccc-c-cccc-ccccccccceEEeecCCCCCCHHHHHHHHhhc-CCeeEEEEEecCCCCCcCCeEEEEECCHHHHHH
Confidence 221100 0 0000 01112345799999999999999999999997 999999999985 5789999999999999999
Q ss_pred HHh-cCCCeeCCeeeEEeecCCCCCCC
Q 017897 332 ALN-CSGAVLGSLPIRVSPSKTPVRPR 357 (364)
Q Consensus 332 Al~-lng~~~~g~~l~V~~ak~~~~~~ 357 (364)
|+. ||+..++|+.|+|.++.+++.+.
T Consensus 262 AI~amNg~elgGr~LrV~kAi~pP~~~ 288 (612)
T TIGR01645 262 AIASMNLFDLGGQYLRVGKCVTPPDAL 288 (612)
T ss_pred HHHHhCCCeeCCeEEEEEecCCCcccc
Confidence 999 99999999999999999865443
No 18
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.96 E-value=1.5e-28 Score=237.56 Aligned_cols=162 Identities=23% Similarity=0.445 Sum_probs=145.9
Q ss_pred CcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEeCCHHHHHHHHH-ccccccCCeeEEEeeCCC
Q 017897 178 RRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSKT 254 (364)
Q Consensus 178 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~~--~~rG~aFV~F~~~~~A~~al~-l~g~~l~g~~i~V~~a~~ 254 (364)
..+|||+|||.++++++|+++|+.||+|.+|+|++|+. .++|||||+|.+.++|.+||+ |+|..+.|++|.|.++.+
T Consensus 3 ~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~~ 82 (352)
T TIGR01661 3 KTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYARP 82 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeecc
Confidence 57899999999999999999999999999999999874 579999999999999999998 999999999999999753
Q ss_pred CCCCCCCCCCCCCccccccCceEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccC--CCCeeEEEEEecCHHHHHHH
Q 017897 255 AIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAA 332 (364)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~--~~~kg~afV~F~~~e~A~~A 332 (364)
.. ......+|||+|||..+++++|+.+|++| |.|..+.++.+. +.++|||||+|.+.++|..|
T Consensus 83 ~~--------------~~~~~~~l~v~~l~~~~~~~~l~~~f~~~-G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~a 147 (352)
T TIGR01661 83 SS--------------DSIKGANLYVSGLPKTMTQHELESIFSPF-GQIITSRILSDNVTGLSKGVGFIRFDKRDEADRA 147 (352)
T ss_pred cc--------------cccccceEEECCccccCCHHHHHHHHhcc-CCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHH
Confidence 21 11234689999999999999999999997 999999998875 67899999999999999999
Q ss_pred Hh-cCCCeeCC--eeeEEeecCCCC
Q 017897 333 LN-CSGAVLGS--LPIRVSPSKTPV 354 (364)
Q Consensus 333 l~-lng~~~~g--~~l~V~~ak~~~ 354 (364)
+. |||..+.| ++|.|.|+..+.
T Consensus 148 i~~l~g~~~~g~~~~i~v~~a~~~~ 172 (352)
T TIGR01661 148 IKTLNGTTPSGCTEPITVKFANNPS 172 (352)
T ss_pred HHHhCCCccCCCceeEEEEECCCCC
Confidence 99 99998877 689999987664
No 19
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.96 E-value=7.4e-28 Score=240.71 Aligned_cols=176 Identities=28% Similarity=0.369 Sum_probs=149.2
Q ss_pred CCCCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEeCCHHHHHHHHHccccccCCeeEEEeeC
Q 017897 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPS 252 (364)
Q Consensus 175 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~~--~~rG~aFV~F~~~~~A~~al~l~g~~l~g~~i~V~~a 252 (364)
....++|||+|||..+++++|+++|+.||.|.+|+++.|+. +++|||||+|.+.++|.+||.++|..+.|++|.|.++
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~l~g~~~~g~~i~v~~~ 165 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALALTGQMLLGRPIIVQSS 165 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHhCCCEECCeeeEEeec
Confidence 34568999999999999999999999999999999999874 4799999999999999999999999999999999886
Q ss_pred CCCCCCCCCCCCCCCccccccCceEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccC--CCCeeEEEEEecCHHHHH
Q 017897 253 KTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAI 330 (364)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~--~~~kg~afV~F~~~e~A~ 330 (364)
............. ........++|||+|||..+++++|+++|++| |.|..|.++++. +.++|||||+|.+.++|.
T Consensus 166 ~~~~~~~~~~~~~--~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~-G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~ 242 (457)
T TIGR01622 166 QAEKNRAAKAATH--QPGDIPNFLKLYVGNLHFNITEQELRQIFEPF-GDIEDVQLHRDPETGRSKGFGFIQFHDAEEAK 242 (457)
T ss_pred chhhhhhhhcccc--cCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhc-CCeEEEEEEEcCCCCccceEEEEEECCHHHHH
Confidence 4321111000000 00011236899999999999999999999997 999999999886 578999999999999999
Q ss_pred HHHh-cCCCeeCCeeeEEeecCCC
Q 017897 331 AALN-CSGAVLGSLPIRVSPSKTP 353 (364)
Q Consensus 331 ~Al~-lng~~~~g~~l~V~~ak~~ 353 (364)
+|+. |||..|.|+.|.|.|+...
T Consensus 243 ~A~~~l~g~~i~g~~i~v~~a~~~ 266 (457)
T TIGR01622 243 EALEVMNGFELAGRPIKVGYAQDS 266 (457)
T ss_pred HHHHhcCCcEECCEEEEEEEccCC
Confidence 9999 9999999999999997643
No 20
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=1.1e-28 Score=237.24 Aligned_cols=259 Identities=19% Similarity=0.293 Sum_probs=210.6
Q ss_pred cccCCccccccHHHHHHHHhccCCcceEEecCCCCCCcccccCCCCCCCCCeEEeeecccCCCCCccccccchhhhhhcC
Q 017897 77 RKMGESFKDCEMRDLVDMLSKLNPMAAEFVPPSLANGQIFNFNPAFFGPNGFGYTNNFIMHTDGTANTNGHTTTRRKRNG 156 (364)
Q Consensus 77 ~~~g~~~~~~~~~~L~~~Fs~~G~i~~v~v~~d~~t~~s~~~~~~~~~~~GfaFV~f~~~~~~~~~~~~a~~~~a~~~~~ 156 (364)
.++-.|+-++|.++|+++|+.||+|.||+|++|... + + || ||.|.+ +. .|.. |++.+|
T Consensus 79 ~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g--~-k---------g~-FV~f~~-e~------~a~~--ai~~~n 136 (369)
T KOG0123|consen 79 VFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENG--S-K---------GY-FVQFES-EE------SAKK--AIEKLN 136 (369)
T ss_pred eeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCC--c-e---------ee-EEEeCC-HH------HHHH--HHHHhc
Confidence 566778889999999999999999999999999887 5 5 99 999999 55 4777 999998
Q ss_pred CC--CCccccccCCcccc-------cCCCCCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCCC-CCceEEEEEeC
Q 017897 157 YS--QGKRRMNCRTSNAQ-------QDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN-SVLRFAFVEFT 226 (364)
Q Consensus 157 ~~--~g~~~~~~~~~~~~-------~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~~-~~rG~aFV~F~ 226 (364)
+. .|+........... .....-..+||.+++.+++++.|.++|..+|.|.++.++.+.. .++||+||.|.
T Consensus 137 g~ll~~kki~vg~~~~~~er~~~~~~~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~~g~~~~~gfv~f~ 216 (369)
T KOG0123|consen 137 GMLLNGKKIYVGLFERKEEREAPLGEYKKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRDSIGKSKGFGFVNFE 216 (369)
T ss_pred CcccCCCeeEEeeccchhhhcccccchhhhhhhhheeccccccchHHHHHhhcccCcceEEEEeecCCCCCCCccceeec
Confidence 87 56652222211111 1112234699999999999999999999999999999999874 47999999999
Q ss_pred CHHHHHHHHH-ccccccCCeeEEEeeCCCCCCCC----CCCCCCCCccccccCceEEEEeCCCCCCCHHHHHHHhhhcCC
Q 017897 227 DEEGARAALS-LAGTMLGFYPVRVLPSKTAIAPV----NPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCG 301 (364)
Q Consensus 227 ~~~~A~~al~-l~g~~l~g~~i~V~~a~~~~~~~----~~~~~~~~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~~~G 301 (364)
+++.|..|++ +++..+.+..+.|..+....... .+.......+........|||+||+..++.+.|+.+|+.+ |
T Consensus 217 ~~e~a~~av~~l~~~~~~~~~~~V~~aqkk~e~~~~l~~~~~~~~~~~~~~~~~~nl~vknld~~~~~e~L~~~f~~~-G 295 (369)
T KOG0123|consen 217 NPEDAKKAVETLNGKIFGDKELYVGRAQKKSEREAELKRKFEQEFAKRSVSLQGANLYVKNLDETLSDEKLRKIFSSF-G 295 (369)
T ss_pred ChhHHHHHHHhccCCcCCccceeecccccchhhHHHHhhhhHhhhhhccccccccccccccCccccchhHHHHHHhcc-c
Confidence 9999999998 99999999999999876521100 0000111122225567899999999999999999999997 9
Q ss_pred ceeEEEEeccC-CCCeeEEEEEecCHHHHHHHHh-cCCCeeCCeeeEEeecCCCCCCCC
Q 017897 302 EVQRLRLLGDY-QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSPSKTPVRPRA 358 (364)
Q Consensus 302 ~I~~v~i~~d~-~~~kg~afV~F~~~e~A~~Al~-lng~~~~g~~l~V~~ak~~~~~~~ 358 (364)
.|.+++|+.+. +.++||+||+|.+.++|.+|+. +|+..+.++.|.|.+++....++.
T Consensus 296 eI~s~kv~~~~~g~skG~gfV~fs~~eeA~~A~~~~n~~~i~~k~l~vav~qr~~~r~~ 354 (369)
T KOG0123|consen 296 EITSAKVMVDENGKSKGFGFVEFSSPEEAKKAMTEMNGRLIGGKPLYVAVAQRKEDRRA 354 (369)
T ss_pred ceeeEEEEeccCCCccceEEEEcCCHHHHHHHHHhhChhhhcCCchhhhHHhhhccchh
Confidence 99999999875 8999999999999999999999 999999999999999986554443
No 21
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.95 E-value=1.2e-27 Score=228.80 Aligned_cols=161 Identities=21% Similarity=0.289 Sum_probs=139.3
Q ss_pred cchhcccCCccccccHHHHHHHHhccCCcceEEecCCCCCCcccccCCCCCCCCCeEEeeecccCCCCCccccccchhhh
Q 017897 73 NHMERKMGESFKDCEMRDLVDMLSKLNPMAAEFVPPSLANGQIFNFNPAFFGPNGFGYTNNFIMHTDGTANTNGHTTTRR 152 (364)
Q Consensus 73 ~~~~~~~g~~~~~~~~~~L~~~Fs~~G~i~~v~v~~d~~t~~s~~~~~~~~~~~GfaFV~f~~~~~~~~~~~~a~~~~a~ 152 (364)
....+++++|+|++++++|+++|++||+|.+|+|++|+.|+++ + |||||+|.+ ++ +|.+ |+
T Consensus 106 ~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~s-r---------GyaFVeF~~-~e------~A~~--Ai 166 (346)
T TIGR01659 106 SGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYS-F---------GYAFVDFGS-EA------DSQR--AI 166 (346)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCcc-C---------cEEEEEEcc-HH------HHHH--HH
Confidence 3456788999999999999999999999999999999999999 8 999999999 66 6888 99
Q ss_pred hhcCCC--CCccccccCCcccc--cCCCCCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEeC
Q 017897 153 KRNGYS--QGKRRMNCRTSNAQ--QDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFT 226 (364)
Q Consensus 153 ~~~~~~--~g~~~~~~~~~~~~--~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~~--~~rG~aFV~F~ 226 (364)
+.++.. .+++ +++.++. .......+|||+|||+++|+++|+++|++||.|..++|+.|+. +++|||||+|.
T Consensus 167 ~~LnG~~l~gr~---i~V~~a~p~~~~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~ 243 (346)
T TIGR01659 167 KNLNGITVRNKR---LKVSYARPGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFN 243 (346)
T ss_pred HHcCCCccCCce---eeeecccccccccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEEC
Confidence 888776 5665 4443332 2334467899999999999999999999999999999999864 56899999999
Q ss_pred CHHHHHHHHH-ccccccCC--eeEEEeeCCCC
Q 017897 227 DEEGARAALS-LAGTMLGF--YPVRVLPSKTA 255 (364)
Q Consensus 227 ~~~~A~~al~-l~g~~l~g--~~i~V~~a~~~ 255 (364)
+.++|++||+ |++..+.+ ++|.|.+++..
T Consensus 244 ~~e~A~~Ai~~lng~~~~g~~~~l~V~~a~~~ 275 (346)
T TIGR01659 244 KREEAQEAISALNNVIPEGGSQPLTVRLAEEH 275 (346)
T ss_pred CHHHHHHHHHHhCCCccCCCceeEEEEECCcc
Confidence 9999999998 99998865 79999998653
No 22
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.95 E-value=8.3e-28 Score=224.38 Aligned_cols=168 Identities=24% Similarity=0.366 Sum_probs=146.6
Q ss_pred CCCCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEeCCHHHHHHHHH-cccc-ccCC--eeEE
Q 017897 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS--VLRFAFVEFTDEEGARAALS-LAGT-MLGF--YPVR 248 (364)
Q Consensus 175 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~~~--~rG~aFV~F~~~~~A~~al~-l~g~-~l~g--~~i~ 248 (364)
+.+.-++|||-||..++|.||+++|++||.|.+|.|++|+.+ ++|||||.|.+.++|.+|+. |++. +|.| .+|.
T Consensus 31 d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvq 110 (510)
T KOG0144|consen 31 DGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQ 110 (510)
T ss_pred CchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCccee
Confidence 345678999999999999999999999999999999999954 79999999999999999997 6665 4666 6999
Q ss_pred EeeCCCCCCCCCCCCCCCCccccccCceEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccC-CCCeeEEEEEecCHH
Q 017897 249 VLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY-QHSTRIAFVEFAMAE 327 (364)
Q Consensus 249 V~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~-~~~kg~afV~F~~~e 327 (364)
|++++.. .++....+.|||+-|++.++|.+++++|++| |.|++|.|++|. +.+||||||+|.+.+
T Consensus 111 vk~Ad~E-------------~er~~~e~KLFvg~lsK~~te~evr~iFs~f-G~Ied~~ilrd~~~~sRGcaFV~fstke 176 (510)
T KOG0144|consen 111 VKYADGE-------------RERIVEERKLFVGMLSKQCTENEVREIFSRF-GHIEDCYILRDPDGLSRGCAFVKFSTKE 176 (510)
T ss_pred ecccchh-------------hhccccchhhhhhhccccccHHHHHHHHHhh-CccchhhheecccccccceeEEEEehHH
Confidence 9998642 1222345799999999999999999999997 999999999986 899999999999999
Q ss_pred HHHHHHh-cCCC-eeCC--eeeEEeecCCCCCC
Q 017897 328 SAIAALN-CSGA-VLGS--LPIRVSPSKTPVRP 356 (364)
Q Consensus 328 ~A~~Al~-lng~-~~~g--~~l~V~~ak~~~~~ 356 (364)
.|..||+ |||. .+.| .+|.|.|+++...+
T Consensus 177 ~A~~Aika~ng~~tmeGcs~PLVVkFADtqkdk 209 (510)
T KOG0144|consen 177 MAVAAIKALNGTQTMEGCSQPLVVKFADTQKDK 209 (510)
T ss_pred HHHHHHHhhccceeeccCCCceEEEecccCCCc
Confidence 9999999 9997 5555 58999999987443
No 23
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.95 E-value=2.8e-27 Score=209.14 Aligned_cols=160 Identities=22% Similarity=0.332 Sum_probs=141.0
Q ss_pred chhcccCCccccccHHHHHHHHhccCCcceEEecCCCCCCcccccCCCCCCCCCeEEeeecccCCCCCccccccchhhhh
Q 017897 74 HMERKMGESFKDCEMRDLVDMLSKLNPMAAEFVPPSLANGQIFNFNPAFFGPNGFGYTNNFIMHTDGTANTNGHTTTRRK 153 (364)
Q Consensus 74 ~~~~~~g~~~~~~~~~~L~~~Fs~~G~i~~v~v~~d~~t~~s~~~~~~~~~~~GfaFV~f~~~~~~~~~~~~a~~~~a~~ 153 (364)
|...++|.|+-+.+-++|++.|.+||+|.+++|+||.+|++| + |||||.|.. .+ ||+. ||.
T Consensus 62 hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~Ks-K---------GYgFVSf~~-k~------dAEn--AI~ 122 (321)
T KOG0148|consen 62 HFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKS-K---------GYGFVSFPN-KE------DAEN--AIQ 122 (321)
T ss_pred ceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcc-c---------ceeEEeccc-hH------HHHH--HHH
Confidence 667889999999999999999999999999999999999999 8 999999999 56 6999 999
Q ss_pred hcCCC-CCcc--ccccCCcccc--------------cCCCCCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCC
Q 017897 154 RNGYS-QGKR--RMNCRTSNAQ--------------QDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS 216 (364)
Q Consensus 154 ~~~~~-~g~~--~~~~~~~~~~--------------~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~~~ 216 (364)
.||+. -|++ |-||...... ....+.++||||||+..+||++|++.|+.||.|.+||+..|+
T Consensus 123 ~MnGqWlG~R~IRTNWATRKp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~q-- 200 (321)
T KOG0148|consen 123 QMNGQWLGRRTIRTNWATRKPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKDQ-- 200 (321)
T ss_pred HhCCeeeccceeeccccccCccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEeccc--
Confidence 99998 5665 3344332221 123456889999999999999999999999999999999986
Q ss_pred CceEEEEEeCCHHHHHHHHH-ccccccCCeeEEEeeCCCCC
Q 017897 217 VLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSKTAI 256 (364)
Q Consensus 217 ~rG~aFV~F~~~~~A~~al~-l~g~~l~g~~i~V~~a~~~~ 256 (364)
||+||.|+++|.|.+||. +|+.++.|..+++.|.+...
T Consensus 201 --GYaFVrF~tkEaAahAIv~mNntei~G~~VkCsWGKe~~ 239 (321)
T KOG0148|consen 201 --GYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCSWGKEGD 239 (321)
T ss_pred --ceEEEEecchhhHHHHHHHhcCceeCceEEEEeccccCC
Confidence 699999999999999997 99999999999999987643
No 24
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.94 E-value=9.9e-26 Score=211.47 Aligned_cols=166 Identities=23% Similarity=0.263 Sum_probs=147.2
Q ss_pred ccccCCCCCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCC--CCCceEEEEEeCCHHHHHHHHH-ccccccC-Ce
Q 017897 170 NAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP--NSVLRFAFVEFTDEEGARAALS-LAGTMLG-FY 245 (364)
Q Consensus 170 ~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~--~~~rG~aFV~F~~~~~A~~al~-l~g~~l~-g~ 245 (364)
|....+...+.||||.||.++.|++|.-+|++.|+|-+++||.|+ +.+||||||+|.+.+.|++|++ ||++.|. |+
T Consensus 75 weg~~p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK 154 (506)
T KOG0117|consen 75 WEGPPPPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGK 154 (506)
T ss_pred ccCCCCCCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCC
Confidence 444445667899999999999999999999999999999999997 4589999999999999999998 9999885 99
Q ss_pred eEEEeeCCCCCCCCCCCCCCCCccccccCceEEEEeCCCCCCCHHHHHHHhhhcCC-ceeEEEEeccC---CCCeeEEEE
Q 017897 246 PVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCG-EVQRLRLLGDY---QHSTRIAFV 321 (364)
Q Consensus 246 ~i~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~~~G-~I~~v~i~~d~---~~~kg~afV 321 (364)
.|.|.-+. .+++|||+|||+.+++++|.+.|++. + .|++|.+.... .+.||||||
T Consensus 155 ~igvc~Sv--------------------an~RLFiG~IPK~k~keeIlee~~kV-teGVvdVivy~~p~dk~KNRGFaFv 213 (506)
T KOG0117|consen 155 LLGVCVSV--------------------ANCRLFIGNIPKTKKKEEILEEMKKV-TEGVVDVIVYPSPDDKTKNRGFAFV 213 (506)
T ss_pred EeEEEEee--------------------ecceeEeccCCccccHHHHHHHHHhh-CCCeeEEEEecCccccccccceEEE
Confidence 99998753 35899999999999999999999997 6 68899888753 689999999
Q ss_pred EecCHHHHHHHHh--cCCC-eeCCeeeEEeecCCCCCC
Q 017897 322 EFAMAESAIAALN--CSGA-VLGSLPIRVSPSKTPVRP 356 (364)
Q Consensus 322 ~F~~~e~A~~Al~--lng~-~~~g~~l~V~~ak~~~~~ 356 (364)
+|.++..|..|-+ ++|. .+.|+.+.|+||.+...+
T Consensus 214 eYe~H~~Aa~aRrKl~~g~~klwgn~~tVdWAep~~e~ 251 (506)
T KOG0117|consen 214 EYESHRAAAMARRKLMPGKIKLWGNAITVDWAEPEEEP 251 (506)
T ss_pred EeecchhHHHHHhhccCCceeecCCcceeeccCcccCC
Confidence 9999999999998 6664 999999999999987543
No 25
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.94 E-value=1.9e-25 Score=224.24 Aligned_cols=163 Identities=22% Similarity=0.224 Sum_probs=138.7
Q ss_pred ccCCCCCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCC-CCCceEEEEEeCCHHHHHHHHH-ccccccC-CeeEE
Q 017897 172 QQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP-NSVLRFAFVEFTDEEGARAALS-LAGTMLG-FYPVR 248 (364)
Q Consensus 172 ~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~-~~~rG~aFV~F~~~~~A~~al~-l~g~~l~-g~~i~ 248 (364)
...+...++|||+|||+++++++|+++|++||.|.+++|++|. +.+||||||+|.+.++|++||+ |++..+. |+.|.
T Consensus 52 ~~~p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~ 131 (578)
T TIGR01648 52 GVQPGRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLG 131 (578)
T ss_pred CCCCCCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccc
Confidence 3345567899999999999999999999999999999999985 4589999999999999999998 9998875 78887
Q ss_pred EeeCCCCCCCCCCCCCCCCccccccCceEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEecc---CCCCeeEEEEEecC
Q 017897 249 VLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGD---YQHSTRIAFVEFAM 325 (364)
Q Consensus 249 V~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d---~~~~kg~afV~F~~ 325 (364)
|.++. ..++|||+|||..+++++|.+.|+++...+..+.+... .++++|||||+|.+
T Consensus 132 V~~S~--------------------~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s 191 (578)
T TIGR01648 132 VCISV--------------------DNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYES 191 (578)
T ss_pred ccccc--------------------cCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCC
Confidence 77642 24799999999999999999999997335666655432 35789999999999
Q ss_pred HHHHHHHHh-cC-C-CeeCCeeeEEeecCCCC
Q 017897 326 AESAIAALN-CS-G-AVLGSLPIRVSPSKTPV 354 (364)
Q Consensus 326 ~e~A~~Al~-ln-g-~~~~g~~l~V~~ak~~~ 354 (364)
+++|.+|+. |+ + ..+.|+.|.|.|+.+..
T Consensus 192 ~edAa~AirkL~~gki~l~Gr~I~VdwA~p~~ 223 (578)
T TIGR01648 192 HRAAAMARRKLMPGRIQLWGHVIAVDWAEPEE 223 (578)
T ss_pred HHHHHHHHHHhhccceEecCceEEEEeecccc
Confidence 999999998 64 3 47899999999998753
No 26
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.93 E-value=7.2e-25 Score=222.05 Aligned_cols=175 Identities=22% Similarity=0.270 Sum_probs=140.2
Q ss_pred CCCCCcEEEEeCCCCCCcHHHHHHHhhcC------------CCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHHccccc
Q 017897 174 DEVIRRTVYVSDIDQQVTEEQLATLFLTC------------GQVVDCRICGDPNSVLRFAFVEFTDEEGARAALSLAGTM 241 (364)
Q Consensus 174 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~------------G~i~~~~i~~d~~~~rG~aFV~F~~~~~A~~al~l~g~~ 241 (364)
.....++|||||||+.+|+++|+++|..+ +.|..+.+.. .+|||||+|.+.++|..||+|+|..
T Consensus 171 ~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~~----~kg~afVeF~~~e~A~~Al~l~g~~ 246 (509)
T TIGR01642 171 ATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNINK----EKNFAFLEFRTVEEATFAMALDSII 246 (509)
T ss_pred CCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEECC----CCCEEEEEeCCHHHHhhhhcCCCeE
Confidence 34456899999999999999999999975 3455555543 4689999999999999999999999
Q ss_pred cCCeeEEEeeCCCCCCCCCCC--C---CC----------CCccccccCceEEEEeCCCCCCCHHHHHHHhhhcCCceeEE
Q 017897 242 LGFYPVRVLPSKTAIAPVNPT--F---LP----------RSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRL 306 (364)
Q Consensus 242 l~g~~i~V~~a~~~~~~~~~~--~---~~----------~~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v 306 (364)
+.|++|.|.+........... . .+ ..........++|||+|||..+++++|+++|+.| |.|..+
T Consensus 247 ~~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~-G~i~~~ 325 (509)
T TIGR01642 247 YSNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESF-GDLKAF 325 (509)
T ss_pred eeCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhc-CCeeEE
Confidence 999999998654322110000 0 00 0001112345799999999999999999999997 999999
Q ss_pred EEeccC--CCCeeEEEEEecCHHHHHHHHh-cCCCeeCCeeeEEeecCCC
Q 017897 307 RLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSPSKTP 353 (364)
Q Consensus 307 ~i~~d~--~~~kg~afV~F~~~e~A~~Al~-lng~~~~g~~l~V~~ak~~ 353 (364)
.++++. +.++|||||+|.+.++|..||. |||..|+|+.|.|.++...
T Consensus 326 ~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~ 375 (509)
T TIGR01642 326 NLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVG 375 (509)
T ss_pred EEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccC
Confidence 999875 7799999999999999999999 9999999999999998653
No 27
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.93 E-value=2.2e-25 Score=219.63 Aligned_cols=247 Identities=19% Similarity=0.281 Sum_probs=190.1
Q ss_pred hcccCCccccccHHHHHHHHhccCCcceEEecCCCCCCcccccCCCCCCCCCeEEeeecccCCCCCccccccchhhhhhc
Q 017897 76 ERKMGESFKDCEMRDLVDMLSKLNPMAAEFVPPSLANGQIFNFNPAFFGPNGFGYTNNFIMHTDGTANTNGHTTTRRKRN 155 (364)
Q Consensus 76 ~~~~g~~~~~~~~~~L~~~Fs~~G~i~~v~v~~d~~t~~s~~~~~~~~~~~GfaFV~f~~~~~~~~~~~~a~~~~a~~~~ 155 (364)
...++.++..+..++|.++|..||+|..+.+++ .|.. ++|.|.. +. +|.. |.+.+
T Consensus 387 vil~kNlpa~t~~~elt~~F~~fG~i~rvllp~---~G~~-------------aiv~fl~-p~------eAr~--Afrkl 441 (725)
T KOG0110|consen 387 VILVKNLPAGTLSEELTEAFLRFGEIGRVLLPP---GGTG-------------AIVEFLN-PL------EARK--AFRKL 441 (725)
T ss_pred eeeeccCccccccHHHHHHhhcccccceeecCc---ccce-------------eeeeecC-cc------chHH--HHHHh
Confidence 344699999999999999999999999995542 2211 6788887 55 5777 77777
Q ss_pred CCCCCcc---ccccCCc---c--c------------------c------------cC-------------CCCCcEEEEe
Q 017897 156 GYSQGKR---RMNCRTS---N--A------------------Q------------QD-------------EVIRRTVYVS 184 (364)
Q Consensus 156 ~~~~g~~---~~~~~~~---~--~------------------~------------~~-------------~~~~~~lfV~ 184 (364)
.|...+. .+.|... . + . ++ .....+|||.
T Consensus 442 aysr~k~~plyle~aP~dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvk 521 (725)
T KOG0110|consen 442 AYSRFKSAPLYLEWAPEDVFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVK 521 (725)
T ss_pred chhhhccCccccccChhhhccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhh
Confidence 7762111 1111100 0 0 0 00 0111239999
Q ss_pred CCCCCCcHHHHHHHhhcCCCeeEEEEecCCC-----CCceEEEEEeCCHHHHHHHHH-ccccccCCeeEEEeeCCCCCCC
Q 017897 185 DIDQQVTEEQLATLFLTCGQVVDCRICGDPN-----SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSKTAIAP 258 (364)
Q Consensus 185 nLp~~~te~~L~~~F~~~G~i~~~~i~~d~~-----~~rG~aFV~F~~~~~A~~al~-l~g~~l~g~~i~V~~a~~~~~~ 258 (364)
||++++|.++|...|...|.|.++.|..-+. -|.|||||+|.++++|..|++ |+|+.|.|+.|.|+.+... +.
T Consensus 522 Nlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~~k-~~ 600 (725)
T KOG0110|consen 522 NLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISENK-PA 600 (725)
T ss_pred cCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEeccCc-cc
Confidence 9999999999999999999999998876442 257999999999999999998 9999999999999998611 11
Q ss_pred CCCCCCCCCccccccCceEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccC--CCCeeEEEEEecCHHHHHHHHh-c
Q 017897 259 VNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-C 335 (364)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~--~~~kg~afV~F~~~e~A~~Al~-l 335 (364)
.. .. ...........|.|+|||+..+-.+++.+|..| |.|.+|+|++.. +.++|||||.|.++.+|..|+. |
T Consensus 601 ~~--~g--K~~~~kk~~tKIlVRNipFeAt~rEVr~LF~aF-GqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al 675 (725)
T KOG0110|consen 601 ST--VG--KKKSKKKKGTKILVRNIPFEATKREVRKLFTAF-GQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDAL 675 (725)
T ss_pred cc--cc--cccccccccceeeeeccchHHHHHHHHHHHhcc-cceeeeccchhhcchhhccceeeeccCcHHHHHHHHhh
Confidence 00 01 111112336799999999999999999999997 999999999763 5679999999999999999999 9
Q ss_pred CCCeeCCeeeEEeecCCC
Q 017897 336 SGAVLGSLPIRVSPSKTP 353 (364)
Q Consensus 336 ng~~~~g~~l~V~~ak~~ 353 (364)
.++.|.||+|.+.|++.-
T Consensus 676 ~STHlyGRrLVLEwA~~d 693 (725)
T KOG0110|consen 676 GSTHLYGRRLVLEWAKSD 693 (725)
T ss_pred cccceechhhheehhccc
Confidence 999999999999999753
No 28
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.93 E-value=1.1e-25 Score=188.53 Aligned_cols=167 Identities=26% Similarity=0.354 Sum_probs=147.4
Q ss_pred CCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEeCCHHHHHHHHH-ccccccCCeeEEEeeCC
Q 017897 177 IRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS--VLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSK 253 (364)
Q Consensus 177 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~~~--~rG~aFV~F~~~~~A~~al~-l~g~~l~g~~i~V~~a~ 253 (364)
...+||||||+..++++.|+++|-+.|+|+.+++++|+-+ .+|||||+|.++++|+-|++ ||...|-|++|+|..+.
T Consensus 8 qd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas 87 (203)
T KOG0131|consen 8 QDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKAS 87 (203)
T ss_pred CCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEecc
Confidence 4679999999999999999999999999999999999844 69999999999999999999 99889999999999974
Q ss_pred CCCCCCCCCCCCCCccccccCceEEEEeCCCCCCCHHHHHHHhhhcCCceeEE-EEeccC--CCCeeEEEEEecCHHHHH
Q 017897 254 TAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRL-RLLGDY--QHSTRIAFVEFAMAESAI 330 (364)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v-~i~~d~--~~~kg~afV~F~~~e~A~ 330 (364)
.. ......+..|||+||.+.++|..|.++|+.| |.+.+. ++++++ +.++|+|||.|.+.+.+.
T Consensus 88 ~~-------------~~nl~vganlfvgNLd~~vDe~~L~dtFsaf-G~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd 153 (203)
T KOG0131|consen 88 AH-------------QKNLDVGANLFVGNLDPEVDEKLLYDTFSAF-GVLISPPKIMRDPDTGNPKGFGFINYASFEASD 153 (203)
T ss_pred cc-------------cccccccccccccccCcchhHHHHHHHHHhc-cccccCCcccccccCCCCCCCeEEechhHHHHH
Confidence 21 1112234799999999999999999999996 988764 677775 689999999999999999
Q ss_pred HHHh-cCCCeeCCeeeEEeecCCCCCCC
Q 017897 331 AALN-CSGAVLGSLPIRVSPSKTPVRPR 357 (364)
Q Consensus 331 ~Al~-lng~~~~g~~l~V~~ak~~~~~~ 357 (364)
+|+. +||..+..+++.|+++.....+.
T Consensus 154 ~ai~s~ngq~l~nr~itv~ya~k~~~kg 181 (203)
T KOG0131|consen 154 AAIGSMNGQYLCNRPITVSYAFKKDTKG 181 (203)
T ss_pred HHHHHhccchhcCCceEEEEEEecCCCc
Confidence 9999 99999999999999997765443
No 29
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.93 E-value=2.6e-25 Score=195.61 Aligned_cols=167 Identities=23% Similarity=0.416 Sum_probs=149.3
Q ss_pred CCCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCC--CCCceEEEEEeCCHHHHHHHHH-ccccccCCeeEEEeeC
Q 017897 176 VIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP--NSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPS 252 (364)
Q Consensus 176 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~--~~~rG~aFV~F~~~~~A~~al~-l~g~~l~g~~i~V~~a 252 (364)
....+|.|.-||..+|+++|+.+|...|+|++|++++|+ +.+.|||||.|-++++|++|+. |||..+..+.|+|.++
T Consensus 39 ~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyA 118 (360)
T KOG0145|consen 39 ESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYA 118 (360)
T ss_pred cccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEec
Confidence 345679999999999999999999999999999999998 4589999999999999999998 9999999999999998
Q ss_pred CCCCCCCCCCCCCCCccccccCceEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccC--CCCeeEEEEEecCHHHHH
Q 017897 253 KTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAI 330 (364)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~--~~~kg~afV~F~~~e~A~ 330 (364)
++. +. ......|||.+||+..+..+|.++|++| |.|..-+|+.|. +.+||.+||.|..+.+|.
T Consensus 119 RPS-----------s~---~Ik~aNLYvSGlPktMtqkelE~iFs~f-GrIItSRiL~dqvtg~srGVgFiRFDKr~EAe 183 (360)
T KOG0145|consen 119 RPS-----------SD---SIKDANLYVSGLPKTMTQKELEQIFSPF-GRIITSRILVDQVTGLSRGVGFIRFDKRIEAE 183 (360)
T ss_pred cCC-----------hh---hhcccceEEecCCccchHHHHHHHHHHh-hhhhhhhhhhhcccceecceeEEEecchhHHH
Confidence 642 22 1234699999999999999999999997 999988888886 789999999999999999
Q ss_pred HHHh-cCCCeeCC--eeeEEeecCCCCCCC
Q 017897 331 AALN-CSGAVLGS--LPIRVSPSKTPVRPR 357 (364)
Q Consensus 331 ~Al~-lng~~~~g--~~l~V~~ak~~~~~~ 357 (364)
.||. |||..--| .+|.|+|+.+|..+.
T Consensus 184 ~AIk~lNG~~P~g~tepItVKFannPsq~t 213 (360)
T KOG0145|consen 184 EAIKGLNGQKPSGCTEPITVKFANNPSQKT 213 (360)
T ss_pred HHHHhccCCCCCCCCCCeEEEecCCccccc
Confidence 9999 99997766 489999998886544
No 30
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.93 E-value=1.8e-24 Score=198.25 Aligned_cols=253 Identities=18% Similarity=0.313 Sum_probs=197.0
Q ss_pred hhcccCCccccccHHHHHHHHhccCCcceEEecCCCCCCcccccCCCCCCCCCeEEeeecccCCCCCccccccchhhhhh
Q 017897 75 MERKMGESFKDCEMRDLVDMLSKLNPMAAEFVPPSLANGQIFNFNPAFFGPNGFGYTNNFIMHTDGTANTNGHTTTRRKR 154 (364)
Q Consensus 75 ~~~~~g~~~~~~~~~~L~~~Fs~~G~i~~v~v~~d~~t~~s~~~~~~~~~~~GfaFV~f~~~~~~~~~~~~a~~~~a~~~ 154 (364)
...++|.++|+.-++.|+..|..||+|.||.+..|+.|++. + |||||+|.- ++ .|+. |++.
T Consensus 114 cRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kH-K---------gFAFVEYEv-PE------aAqL--AlEq 174 (544)
T KOG0124|consen 114 CRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKH-K---------GFAFVEYEV-PE------AAQL--ALEQ 174 (544)
T ss_pred HheeeeeeEEEechHHHHhhccCCCCcceeecccccccccc-c---------ceEEEEEeC-cH------HHHH--HHHH
Confidence 35577999999999999999999999999999999999998 8 999999999 77 6888 9999
Q ss_pred cCCC--CCccccccCCcccc-------------cCCCCCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCCC--CC
Q 017897 155 NGYS--QGKRRMNCRTSNAQ-------------QDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SV 217 (364)
Q Consensus 155 ~~~~--~g~~~~~~~~~~~~-------------~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~~--~~ 217 (364)
||+. .||. +++..+. ++...-..|||..+.++.+++||+..|+.||+|+.|++.+++. ++
T Consensus 175 MNg~mlGGRN---iKVgrPsNmpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~H 251 (544)
T KOG0124|consen 175 MNGQMLGGRN---IKVGRPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGH 251 (544)
T ss_pred hccccccCcc---ccccCCCCCcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCc
Confidence 9987 4554 3322221 2223346799999999999999999999999999999999884 47
Q ss_pred ceEEEEEeCCHHHHHHHHH-ccccccCCeeEEEeeCCCC-----------------------------------------
Q 017897 218 LRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSKTA----------------------------------------- 255 (364)
Q Consensus 218 rG~aFV~F~~~~~A~~al~-l~g~~l~g~~i~V~~a~~~----------------------------------------- 255 (364)
||||||+|.+..+...|+. +|-..++|..|+|..+-+.
T Consensus 252 kGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~vTPP~aLl~Pat~s~~P~aaaVAaAAaTAKi~A~eAvAg~avlg 331 (544)
T KOG0124|consen 252 KGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVTPPDALLQPATVSAIPAAAAVAAAAATAKIMAAEAVAGSAVLG 331 (544)
T ss_pred cceeeEEeccccchHHHhhhcchhhcccceEecccccCCCchhcCCCCcccCchHHHHHHHHHHHHHHHHHHhccCCccc
Confidence 9999999999999999998 9999999999999765320
Q ss_pred ------------------------------------CCCCCCCC----------------------------------CC
Q 017897 256 ------------------------------------IAPVNPTF----------------------------------LP 265 (364)
Q Consensus 256 ------------------------------------~~~~~~~~----------------------------------~~ 265 (364)
..+..|.. .|
T Consensus 332 ~~G~~~~vSpA~~aa~p~~~l~qa~~a~~~pgvi~~vtP~~P~iP~~i~p~g~v~P~LA~ppT~g~L~kkkeKe~eelqp 411 (544)
T KOG0124|consen 332 TVGAPGLVSPAPRAAQPLGTLPQAVMAAQAPGVITGVTPARPPIPVTIPPVGVVNPILASPPTLGLLEKKKEKEEEELQP 411 (544)
T ss_pred ccCCccccCccccccCCCCCccccchhccCCceeccCCCCCCCCCccCCCcceechhhcCCCchhhcchhhhhhHhhhcc
Confidence 00000000 00
Q ss_pred CCccc-------------------------cccCceEEEEeCC--CCCCC---HHHHHHHhhhcCCceeEEEEeccCCCC
Q 017897 266 RSEDE-------------------------REMCSRTIYCTNI--DKKVT---QGDIKLFFESVCGEVQRLRLLGDYQHS 315 (364)
Q Consensus 266 ~~~~~-------------------------~~~~~~~l~V~nL--p~~~t---ee~L~~~F~~~~G~I~~v~i~~d~~~~ 315 (364)
+..+. +....+.+.++|+ |.+++ +.+|++.+++| |.|.+|.|...+...
T Consensus 412 kl~~~~~L~~QE~msI~G~sARhlvMqkLmR~~~S~VivLRNMV~P~DiDe~LegEi~EECgKf-G~V~rViI~nekq~e 490 (544)
T KOG0124|consen 412 KLERPEMLSEQEHMSISGSSARHLVMQKLMRKQESTVIVLRNMVDPKDIDEDLEGEITEECGKF-GAVNRVIIYNEKQGE 490 (544)
T ss_pred cccCHHHhhhhhCccccCccHHHHHHHHHhccccCcEEEEeccCChhhhhhHHHHHHHHHHhcc-cceeEEEEEeccccc
Confidence 00000 1223567888887 44554 46899999997 999999987654211
Q ss_pred ------eeEEEEEecCHHHHHHHHh-cCCCeeCCeeeEEeec
Q 017897 316 ------TRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSPS 350 (364)
Q Consensus 316 ------kg~afV~F~~~e~A~~Al~-lng~~~~g~~l~V~~a 350 (364)
----||+|.....+.+|.. |+|+.|+|+++.....
T Consensus 491 ~edaeiiVKIFVefS~~~e~~rak~ALdGRfFgGr~VvAE~Y 532 (544)
T KOG0124|consen 491 EEDAEIIVKIFVEFSIASETHRAKQALDGRFFGGRKVVAEVY 532 (544)
T ss_pred ccchhhhheeeeeechhhHHHHHHHhhccceecCceeehhhh
Confidence 2246999999999999999 9999999999876543
No 31
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.91 E-value=6.5e-24 Score=203.35 Aligned_cols=175 Identities=22% Similarity=0.275 Sum_probs=148.7
Q ss_pred CcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEeCCHHHHHHHHH-ccccccCCeeEEEeeCCC
Q 017897 178 RRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS--VLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSKT 254 (364)
Q Consensus 178 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~~~--~rG~aFV~F~~~~~A~~al~-l~g~~l~g~~i~V~~a~~ 254 (364)
..||||++||++++.++|.++|+.+|+|..|.++.++++ +||||||+|.-.++++.|++ +.+..+.|+.|.|.++..
T Consensus 5 g~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~ 84 (678)
T KOG0127|consen 5 GATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKK 84 (678)
T ss_pred CceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceecccccccc
Confidence 489999999999999999999999999999999999976 59999999999999999998 999999999999999864
Q ss_pred CCCCCC-----CC-----CCCCCccc--cccCceEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccC-CCCeeEEEE
Q 017897 255 AIAPVN-----PT-----FLPRSEDE--REMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY-QHSTRIAFV 321 (364)
Q Consensus 255 ~~~~~~-----~~-----~~~~~~~~--~~~~~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~-~~~kg~afV 321 (364)
...+.. +. +....... ...+...|.|+|||+.+..++|+.+|+.| |.|..|.|++.. ++-.|||||
T Consensus 85 R~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~-G~V~Ei~IP~k~dgklcGFaFV 163 (678)
T KOG0127|consen 85 RARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNF-GKVVEIVIPRKKDGKLCGFAFV 163 (678)
T ss_pred cccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhc-ceEEEEEcccCCCCCccceEEE
Confidence 322110 00 00000000 12236799999999999999999999997 999999999765 556699999
Q ss_pred EecCHHHHHHHHh-cCCCeeCCeeeEEeecCCC
Q 017897 322 EFAMAESAIAALN-CSGAVLGSLPIRVSPSKTP 353 (364)
Q Consensus 322 ~F~~~e~A~~Al~-lng~~~~g~~l~V~~ak~~ 353 (364)
+|....+|.+||+ +|+..|+||+|-|.||-.+
T Consensus 164 ~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~K 196 (678)
T KOG0127|consen 164 QFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDK 196 (678)
T ss_pred EEeeHHHHHHHHHhccCceecCceeEEeeeccc
Confidence 9999999999999 9999999999999999765
No 32
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.91 E-value=3.6e-24 Score=191.24 Aligned_cols=150 Identities=27% Similarity=0.442 Sum_probs=138.7
Q ss_pred cEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-ccccccCCeeEEEeeCCCCCC
Q 017897 179 RTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSKTAIA 257 (364)
Q Consensus 179 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~~~~rG~aFV~F~~~~~A~~al~-l~g~~l~g~~i~V~~a~~~~~ 257 (364)
-+|||||||..+++.+|+.+|++||+|++|.|+++ ||||+.++...|+.||. |+|.+|.|..|.|+-++..
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK-- 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK-- 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc------cceEEeecccccHHHHhhcccceecceEEEEEecccc--
Confidence 47999999999999999999999999999999975 99999999999999999 9999999999999987531
Q ss_pred CCCCCCCCCCccccccCceEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccCCCCeeEEEEEecCHHHHHHHHh-cC
Q 017897 258 PVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CS 336 (364)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~e~A~~Al~-ln 336 (364)
.....+|+|+||.+.++.++|+..|++| |.|..|.|++| |+||+|.-.++|..|+. |+
T Consensus 75 --------------sk~stkl~vgNis~tctn~ElRa~fe~y-gpviecdivkd------y~fvh~d~~eda~~air~l~ 133 (346)
T KOG0109|consen 75 --------------SKASTKLHVGNISPTCTNQELRAKFEKY-GPVIECDIVKD------YAFVHFDRAEDAVEAIRGLD 133 (346)
T ss_pred --------------CCCccccccCCCCccccCHHHhhhhccc-CCceeeeeecc------eeEEEEeeccchHHHHhccc
Confidence 3345799999999999999999999997 99999999887 99999999999999999 99
Q ss_pred CCeeCCeeeEEeecCCCCCCC
Q 017897 337 GAVLGSLPIRVSPSKTPVRPR 357 (364)
Q Consensus 337 g~~~~g~~l~V~~ak~~~~~~ 357 (364)
+++|.|++|+|..+....+..
T Consensus 134 ~~~~~gk~m~vq~stsrlrta 154 (346)
T KOG0109|consen 134 NTEFQGKRMHVQLSTSRLRTA 154 (346)
T ss_pred ccccccceeeeeeeccccccC
Confidence 999999999999988765543
No 33
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.90 E-value=2.3e-23 Score=183.97 Aligned_cols=191 Identities=21% Similarity=0.380 Sum_probs=154.6
Q ss_pred cCCcccccCCCCCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCC-CCCceEEEEEeCCHHHHHHHHH-ccccc-c
Q 017897 166 CRTSNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP-NSVLRFAFVEFTDEEGARAALS-LAGTM-L 242 (364)
Q Consensus 166 ~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~-~~~rG~aFV~F~~~~~A~~al~-l~g~~-l 242 (364)
++.........+.++||||.|...-.|+|++.+|..||.|.+|.+++.+ +.+||+|||.|.++-+|..||. |+|.. +
T Consensus 7 vkpadsesrg~~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTm 86 (371)
T KOG0146|consen 7 VKPADSESRGGDDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTM 86 (371)
T ss_pred ccccccccCCccchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcccccC
Confidence 3333334444467899999999999999999999999999999999977 5689999999999999999998 98865 5
Q ss_pred CC--eeEEEeeCCCC-----------------------------------------------------------------
Q 017897 243 GF--YPVRVLPSKTA----------------------------------------------------------------- 255 (364)
Q Consensus 243 ~g--~~i~V~~a~~~----------------------------------------------------------------- 255 (364)
.| ..|.|+++++.
T Consensus 87 pGASSSLVVK~ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~ 166 (371)
T KOG0146|consen 87 PGASSSLVVKFADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQM 166 (371)
T ss_pred CCCccceEEEeccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHH
Confidence 55 58999998750
Q ss_pred ---------CCCCCCC-------------------------C---------------------------CCC--------
Q 017897 256 ---------IAPVNPT-------------------------F---------------------------LPR-------- 266 (364)
Q Consensus 256 ---------~~~~~~~-------------------------~---------------------------~~~-------- 266 (364)
-.+..+. + .|.
T Consensus 167 aA~~angl~A~Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~a 246 (371)
T KOG0146|consen 167 AALNANGLAAAPVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPLQQA 246 (371)
T ss_pred HHHhhcccccCCcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchhhhh
Confidence 0000000 0 000
Q ss_pred ------------------------------CccccccCceEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccC--CC
Q 017897 267 ------------------------------SEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QH 314 (364)
Q Consensus 267 ------------------------------~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~--~~ 314 (364)
......+.+++|||..||.+..+.+|..+|-+| |.|.+.++..|. +.
T Consensus 247 ~~g~~~Y~Aaypaays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PF-GhivSaKVFvDRATNQ 325 (371)
T KOG0146|consen 247 YAGVQQYAAAYPAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPF-GHIVSAKVFVDRATNQ 325 (371)
T ss_pred hhhHHHHhhhcchhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhccc-cceeeeeeeehhcccc
Confidence 000114567999999999999999999999997 999999999886 78
Q ss_pred CeeEEEEEecCHHHHHHHHh-cCCCeeCCeeeEEeecCCCCCCC
Q 017897 315 STRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSPSKTPVRPR 357 (364)
Q Consensus 315 ~kg~afV~F~~~e~A~~Al~-lng~~~~g~~l~V~~ak~~~~~~ 357 (364)
+|+|+||.|+++.+|..||. |||+.|+-++|+|...+++...|
T Consensus 326 SKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQLKRPkdanR 369 (371)
T KOG0146|consen 326 SKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDANR 369 (371)
T ss_pred ccceeeEecCCchhHHHHHHHhcchhhhhhhhhhhhcCccccCC
Confidence 99999999999999999999 99999999999999988775443
No 34
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.89 E-value=5.9e-23 Score=197.74 Aligned_cols=244 Identities=19% Similarity=0.209 Sum_probs=177.7
Q ss_pred ccccHHHHHHHHhccCCcceEEecCCCCCCcccccCCCCCCCCCeEEeeecccCCCCCccccccchhhhhhcCCC-CCcc
Q 017897 84 KDCEMRDLVDMLSKLNPMAAEFVPPSLANGQIFNFNPAFFGPNGFGYTNNFIMHTDGTANTNGHTTTRRKRNGYS-QGKR 162 (364)
Q Consensus 84 ~~~~~~~L~~~Fs~~G~i~~v~v~~d~~t~~s~~~~~~~~~~~GfaFV~f~~~~~~~~~~~~a~~~~a~~~~~~~-~g~~ 162 (364)
-..+.++|.++|+.+|.|-.|+++.|+.++++ + |-|||.|.+ .. .... |+...+-. -|.+
T Consensus 189 ~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rs-k---------gi~Yvef~D-~~------sVp~--aiaLsGqrllg~p 249 (549)
T KOG0147|consen 189 RRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRS-K---------GIAYVEFCD-EQ------SVPL--AIALSGQRLLGVP 249 (549)
T ss_pred hcCCchhHHHHHHhhcCcceeEeeccccchhh-c---------ceeEEEEec-cc------chhh--HhhhcCCcccCce
Confidence 44578999999999999999999999999999 8 999999998 44 2444 44332222 3333
Q ss_pred ccccCCccccc-------------CCCCC-cEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCC--CCCceEEEEEeC
Q 017897 163 RMNCRTSNAQQ-------------DEVIR-RTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP--NSVLRFAFVEFT 226 (364)
Q Consensus 163 ~~~~~~~~~~~-------------~~~~~-~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~--~~~rG~aFV~F~ 226 (364)
|.+....+.+ ....+ ..||||||...+++++|+.+|+.||.|..|.++.|. +.++|||||+|.
T Consensus 250 -v~vq~sEaeknr~a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~ 328 (549)
T KOG0147|consen 250 -VIVQLSEAEKNRAANASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFV 328 (549)
T ss_pred -eEecccHHHHHHHHhccccccccccccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEe
Confidence 2222211111 00111 229999999999999999999999999999999995 567999999999
Q ss_pred CHHHHHHHHH-ccccccCCeeEEEeeCCCCCCCCC--CC-----------------------------------------
Q 017897 227 DEEGARAALS-LAGTMLGFYPVRVLPSKTAIAPVN--PT----------------------------------------- 262 (364)
Q Consensus 227 ~~~~A~~al~-l~g~~l~g~~i~V~~a~~~~~~~~--~~----------------------------------------- 262 (364)
+.+.|.+|++ |||..|.|+.|+|........... ..
T Consensus 329 ~~~~ar~a~e~lngfelAGr~ikV~~v~~r~~~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~~~~s~~~~~ 408 (549)
T KOG0147|consen 329 NKEDARKALEQLNGFELAGRLIKVSVVTERVDTKEAAVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGRSLPSTAISA 408 (549)
T ss_pred cHHHHHHHHHHhccceecCceEEEEEeeeecccccccccccccchhhccccccccccHHHHHHHHhccCCccccchhhhH
Confidence 9999999998 999999999999865321000000 00
Q ss_pred ------------CCC---CCccccc-------cCceEEEEeCCCCC--CC--------HHHHHHHhhhcCCceeEEEEec
Q 017897 263 ------------FLP---RSEDERE-------MCSRTIYCTNIDKK--VT--------QGDIKLFFESVCGEVQRLRLLG 310 (364)
Q Consensus 263 ------------~~~---~~~~~~~-------~~~~~l~V~nLp~~--~t--------ee~L~~~F~~~~G~I~~v~i~~ 310 (364)
+.. ....... .+..++.++|+-.. .| .+++.+-+.+| |.|..|.|-+
T Consensus 409 l~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~i~t~C~lL~nMFdpstete~n~d~eI~edV~Eec~k~-g~v~hi~vd~ 487 (549)
T KOG0147|consen 409 LLLLAKLASAAQFNGVVRVRSVDPADASPAFDIPTQCLLLSNMFDPSTETEPNWDQEIREDVIEECGKH-GKVCHIFVDK 487 (549)
T ss_pred HHhccccchHHhhcCCcCccccCccccccccCCccHHHHHhhcCCcccccCcchhhHHHHHHHHHHHhc-CCeeEEEEcc
Confidence 000 0000011 34456777776322 11 26788888997 9999988865
Q ss_pred cCCCCeeEEEEEecCHHHHHHHHh-cCCCeeCCeeeEEeecC
Q 017897 311 DYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSPSK 351 (364)
Q Consensus 311 d~~~~kg~afV~F~~~e~A~~Al~-lng~~~~g~~l~V~~ak 351 (364)
. +-|+.||.|.+.+.|..|+. |||.+|.|+.|...|-.
T Consensus 488 n---s~g~VYvrc~s~~~A~~a~~alhgrWF~gr~Ita~~~~ 526 (549)
T KOG0147|consen 488 N---SAGCVYVRCPSAEAAGTAVKALHGRWFAGRMITAKYLP 526 (549)
T ss_pred C---CCceEEEecCcHHHHHHHHHHHhhhhhccceeEEEEee
Confidence 4 33899999999999999999 99999999999999854
No 35
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.89 E-value=4.3e-23 Score=192.20 Aligned_cols=161 Identities=17% Similarity=0.207 Sum_probs=131.8
Q ss_pred chhcccCCccccccHHHHHHHHhccCCcceEEecCCCCCCcccccCCCCCCCCCeEEeeecccCCCCCccccccchhhhh
Q 017897 74 HMERKMGESFKDCEMRDLVDMLSKLNPMAAEFVPPSLANGQIFNFNPAFFGPNGFGYTNNFIMHTDGTANTNGHTTTRRK 153 (364)
Q Consensus 74 ~~~~~~g~~~~~~~~~~L~~~Fs~~G~i~~v~v~~d~~t~~s~~~~~~~~~~~GfaFV~f~~~~~~~~~~~~a~~~~a~~ 153 (364)
..+.++|||+|+|+++.|+++|++||+|.+|.+|+|+.|+++ + ||+||+|.+ ++ ...+ ++.
T Consensus 6 ~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rs-r---------gFgfv~f~~-~~------~v~~--vl~ 66 (311)
T KOG4205|consen 6 SGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRS-R---------GFGFVTFAT-PE------GVDA--VLN 66 (311)
T ss_pred CcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCc-c---------cccceecCC-Cc------chhe--eec
Confidence 347788999999999999999999999999999999999999 8 999999998 55 2333 444
Q ss_pred hcCCC-CCccccccCCcccc--c----CCCCCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEE
Q 017897 154 RNGYS-QGKRRMNCRTSNAQ--Q----DEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS--VLRFAFVE 224 (364)
Q Consensus 154 ~~~~~-~g~~~~~~~~~~~~--~----~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~~~--~rG~aFV~ 224 (364)
...+. .|+. |..+...+. . .....++||||+||.++++++|+++|.+||.|..+.++.|..+ ++||+||+
T Consensus 67 ~~~h~~dgr~-ve~k~av~r~~~~~~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~ 145 (311)
T KOG4205|consen 67 ARTHKLDGRS-VEPKRAVSREDQTKVGRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVT 145 (311)
T ss_pred ccccccCCcc-ccceeccCcccccccccccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeE
Confidence 44343 5555 111111111 1 1113458999999999999999999999999999999999865 69999999
Q ss_pred eCCHHHHHHHHHccccccCCeeEEEeeCCC
Q 017897 225 FTDEEGARAALSLAGTMLGFYPVRVLPSKT 254 (364)
Q Consensus 225 F~~~~~A~~al~l~g~~l~g~~i~V~~a~~ 254 (364)
|.+++.+++++....+.|.|+.+.|+.|.+
T Consensus 146 ~~~e~sVdkv~~~~f~~~~gk~vevkrA~p 175 (311)
T KOG4205|consen 146 FDSEDSVDKVTLQKFHDFNGKKVEVKRAIP 175 (311)
T ss_pred eccccccceecccceeeecCceeeEeeccc
Confidence 999999999999999999999999999854
No 36
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.89 E-value=7.9e-23 Score=187.46 Aligned_cols=174 Identities=27% Similarity=0.372 Sum_probs=150.6
Q ss_pred CCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEeCCHHHHHHHHH-ccccccCCeeEEEeeCC
Q 017897 177 IRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSK 253 (364)
Q Consensus 177 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~~--~~rG~aFV~F~~~~~A~~al~-l~g~~l~g~~i~V~~a~ 253 (364)
.-|.||||.|..++.|+.|+..|..||+|.++.+.-|+- +++|||||+|+-+|.|..|++ +||..++||.|+|....
T Consensus 112 iMcRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPs 191 (544)
T KOG0124|consen 112 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPS 191 (544)
T ss_pred HhHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCC
Confidence 357899999999999999999999999999999999984 579999999999999999999 99999999999998642
Q ss_pred CCCCCCCCCCCCCC--ccccccCceEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccC--CCCeeEEEEEecCHHHH
Q 017897 254 TAIAPVNPTFLPRS--EDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESA 329 (364)
Q Consensus 254 ~~~~~~~~~~~~~~--~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~--~~~kg~afV~F~~~e~A 329 (364)
. -|...|-- ..+......+|||..+.++++|+||+..|+-| |+|.+|.+-++. +.++||+|++|.+..+.
T Consensus 192 N-----mpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAF-G~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~ 265 (544)
T KOG0124|consen 192 N-----MPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAF-GEIVKCQLARAPTGRGHKGYGFIEYNNLQSQ 265 (544)
T ss_pred C-----CcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhh-cceeeEEeeccCCCCCccceeeEEeccccch
Confidence 1 01111110 11224466899999999999999999999996 999999999987 57999999999999999
Q ss_pred HHHHh-cCCCeeCCeeeEEeecCCCCCC
Q 017897 330 IAALN-CSGAVLGSLPIRVSPSKTPVRP 356 (364)
Q Consensus 330 ~~Al~-lng~~~~g~~l~V~~ak~~~~~ 356 (364)
..|+. ||-+.++|..|+|..+-+|+..
T Consensus 266 ~eAiasMNlFDLGGQyLRVGk~vTPP~a 293 (544)
T KOG0124|consen 266 SEAIASMNLFDLGGQYLRVGKCVTPPDA 293 (544)
T ss_pred HHHhhhcchhhcccceEecccccCCCch
Confidence 99999 9999999999999998877654
No 37
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.87 E-value=2.2e-22 Score=168.78 Aligned_cols=157 Identities=18% Similarity=0.317 Sum_probs=138.8
Q ss_pred hcccCCccccccHHHHHHHHhccCCcceEEecCCCCCCcccccCCCCCCCCCeEEeeecccCCCCCccccccchhhhhhc
Q 017897 76 ERKMGESFKDCEMRDLVDMLSKLNPMAAEFVPPSLANGQIFNFNPAFFGPNGFGYTNNFIMHTDGTANTNGHTTTRRKRN 155 (364)
Q Consensus 76 ~~~~g~~~~~~~~~~L~~~Fs~~G~i~~v~v~~d~~t~~s~~~~~~~~~~~GfaFV~f~~~~~~~~~~~~a~~~~a~~~~ 155 (364)
..++|+|.-+.+++-|+|+|-+.|+|+++++++|+.|... + ||||++|.+ .+ ||+. |++.+
T Consensus 11 tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~-q---------GygF~Ef~~-ee------dadY--Aikil 71 (203)
T KOG0131|consen 11 TLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKH-Q---------GYGFAEFRT-EE------DADY--AIKIL 71 (203)
T ss_pred eEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccc-c---------ceeEEEEec-hh------hhHH--HHHHH
Confidence 5678999999999999999999999999999999999966 6 999999999 77 7999 99999
Q ss_pred CCC--CCccccccCCcccc---cCCCCCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEE-EEecCCC--CCceEEEEEeCC
Q 017897 156 GYS--QGKRRMNCRTSNAQ---QDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDC-RICGDPN--SVLRFAFVEFTD 227 (364)
Q Consensus 156 ~~~--~g~~~~~~~~~~~~---~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~-~i~~d~~--~~rG~aFV~F~~ 227 (364)
|.. .||+ +++..+. +......+|||+||.+++++..|.+.|+.||.+.+. ++++|+. .++|||||.|.+
T Consensus 72 n~VkLYgrp---Irv~kas~~~~nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~s 148 (203)
T KOG0131|consen 72 NMVKLYGRP---IRVNKASAHQKNLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYAS 148 (203)
T ss_pred HHHHhcCce---eEEEecccccccccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechh
Confidence 976 8999 5554444 444455789999999999999999999999998764 7888876 469999999999
Q ss_pred HHHHHHHHH-ccccccCCeeEEEeeCCC
Q 017897 228 EEGARAALS-LAGTMLGFYPVRVLPSKT 254 (364)
Q Consensus 228 ~~~A~~al~-l~g~~l~g~~i~V~~a~~ 254 (364)
.+.+.+|++ ++|+.+..+++.|.++..
T Consensus 149 feasd~ai~s~ngq~l~nr~itv~ya~k 176 (203)
T KOG0131|consen 149 FEASDAAIGSMNGQYLCNRPITVSYAFK 176 (203)
T ss_pred HHHHHHHHHHhccchhcCCceEEEEEEe
Confidence 999999998 999999999999998743
No 38
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.84 E-value=9.7e-21 Score=176.51 Aligned_cols=171 Identities=21% Similarity=0.300 Sum_probs=148.1
Q ss_pred CCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEeCCHHHHHHHHHccccccCCeeEEEeeCCC
Q 017897 177 IRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS--VLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSKT 254 (364)
Q Consensus 177 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~~~--~rG~aFV~F~~~~~A~~al~l~g~~l~g~~i~V~~a~~ 254 (364)
..++||||+|+++++++.|+++|.+||+|.+|.+++|+.+ +|||+||+|.+.+.+.++|....+.|.|+.|.++.+-+
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~h~~dgr~ve~k~av~ 84 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNARTHKLDGRSVEPKRAVS 84 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecccccccCCccccceeccC
Confidence 5789999999999999999999999999999999999854 69999999999999999998777889999999998743
Q ss_pred CCCCCCCCCCCCCccccccCceEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccC--CCCeeEEEEEecCHHHHHHH
Q 017897 255 AIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAA 332 (364)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~--~~~kg~afV~F~~~e~A~~A 332 (364)
..... ...+....+.|||++||..+++++|+++|++| |.|..+.++.|. .+++||+||.|.+.+++.++
T Consensus 85 r~~~~--------~~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~-g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv 155 (311)
T KOG4205|consen 85 REDQT--------KVGRHLRTKKIFVGGLPPDTTEEDFKDYFEQF-GKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKV 155 (311)
T ss_pred ccccc--------ccccccceeEEEecCcCCCCchHHHhhhhhcc-ceeEeeEEeecccccccccceeeEecccccccee
Confidence 11100 00111246799999999999999999999997 999999999886 57899999999999999999
Q ss_pred HhcCCCeeCCeeeEEeecCCCCCC
Q 017897 333 LNCSGAVLGSLPIRVSPSKTPVRP 356 (364)
Q Consensus 333 l~lng~~~~g~~l~V~~ak~~~~~ 356 (364)
+....+.|.++.+.|..|.++...
T Consensus 156 ~~~~f~~~~gk~vevkrA~pk~~~ 179 (311)
T KOG4205|consen 156 TLQKFHDFNGKKVEVKRAIPKEVM 179 (311)
T ss_pred cccceeeecCceeeEeeccchhhc
Confidence 988899999999999999876433
No 39
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.82 E-value=5.6e-21 Score=184.17 Aligned_cols=176 Identities=30% Similarity=0.398 Sum_probs=148.9
Q ss_pred CCCCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEeCCHHHHHHHHHccccccCCeeEEEeeC
Q 017897 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS--VLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPS 252 (364)
Q Consensus 175 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~~~--~rG~aFV~F~~~~~A~~al~l~g~~l~g~~i~V~~a 252 (364)
+.+.+++|+--|+...+..+|+++|+.+|.|.+|+++.|..+ ++|.|||+|.+.+.+..||.|.|+.+.|.+|.|...
T Consensus 176 ERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aiaLsGqrllg~pv~vq~s 255 (549)
T KOG0147|consen 176 ERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIALSGQRLLGVPVIVQLS 255 (549)
T ss_pred HHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhhhcCCcccCceeEeccc
Confidence 445678999999999999999999999999999999999854 799999999999999999999999999999999986
Q ss_pred CCCCCC---CCCCCCCCCccccccCceEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccC--CCCeeEEEEEecCHH
Q 017897 253 KTAIAP---VNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAE 327 (364)
Q Consensus 253 ~~~~~~---~~~~~~~~~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~--~~~kg~afV~F~~~e 327 (364)
...... ..+.+..... ..+...|||+||.+.+++++|+.+|++| |.|..|.+.+|. |.++|||||+|.+.+
T Consensus 256 Eaeknr~a~~s~a~~~k~~---~~p~~rl~vgnLHfNite~~lr~ifepf-g~Ie~v~l~~d~~tG~skgfGfi~f~~~~ 331 (549)
T KOG0147|consen 256 EAEKNRAANASPALQGKGF---TGPMRRLYVGNLHFNITEDMLRGIFEPF-GKIENVQLTKDSETGRSKGFGFITFVNKE 331 (549)
T ss_pred HHHHHHHHhcccccccccc---ccchhhhhhcccccCchHHHHhhhccCc-ccceeeeeccccccccccCcceEEEecHH
Confidence 543221 1111111111 1222339999999999999999999997 999999999994 899999999999999
Q ss_pred HHHHHHh-cCCCeeCCeeeEEeecCCCC
Q 017897 328 SAIAALN-CSGAVLGSLPIRVSPSKTPV 354 (364)
Q Consensus 328 ~A~~Al~-lng~~~~g~~l~V~~ak~~~ 354 (364)
+|.+|+. |||++|.|+.|+|.......
T Consensus 332 ~ar~a~e~lngfelAGr~ikV~~v~~r~ 359 (549)
T KOG0147|consen 332 DARKALEQLNGFELAGRLIKVSVVTERV 359 (549)
T ss_pred HHHHHHHHhccceecCceEEEEEeeeec
Confidence 9999999 99999999999998865543
No 40
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.78 E-value=4.5e-18 Score=143.11 Aligned_cols=157 Identities=18% Similarity=0.264 Sum_probs=127.4
Q ss_pred CCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-ccccccCCeeEEEeeCCCC
Q 017897 177 IRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSKTA 255 (364)
Q Consensus 177 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~~~~rG~aFV~F~~~~~A~~al~-l~g~~l~g~~i~V~~a~~~ 255 (364)
..+.|||||||.++-+.+|+++|-+||.|.+|.+...++. -.||||+|+++.+|+.||. -+|..+.|+.|+|+++...
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g~-ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprgg 83 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPGP-PPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRGG 83 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCCC-CCeeEEEecCccchhhhhhcccccccCcceEEEEeccCC
Confidence 4689999999999999999999999999999988765532 3699999999999999999 9999999999999998654
Q ss_pred CCCCCCC--C--------CCC--CccccccCceEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccCCCCeeEEEEEe
Q 017897 256 IAPVNPT--F--------LPR--SEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEF 323 (364)
Q Consensus 256 ~~~~~~~--~--------~~~--~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~~~~kg~afV~F 323 (364)
....... + ... ...........+.|.+||++.+++||++...+. |.|....+.+| |++.|+|
T Consensus 84 r~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmRea-GdvCfadv~rD-----g~GvV~~ 157 (241)
T KOG0105|consen 84 RSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREA-GDVCFADVQRD-----GVGVVEY 157 (241)
T ss_pred CcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhh-CCeeeeeeecc-----cceeeee
Confidence 2111000 0 000 000011234689999999999999999999997 99999999888 4899999
Q ss_pred cCHHHHHHHHh-cCCCee
Q 017897 324 AMAESAIAALN-CSGAVL 340 (364)
Q Consensus 324 ~~~e~A~~Al~-lng~~~ 340 (364)
...|+..-|+. |....+
T Consensus 158 ~r~eDMkYAvr~ld~~~~ 175 (241)
T KOG0105|consen 158 LRKEDMKYAVRKLDDQKF 175 (241)
T ss_pred eehhhHHHHHHhhccccc
Confidence 99999999999 776654
No 41
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.78 E-value=5.5e-19 Score=158.20 Aligned_cols=144 Identities=18% Similarity=0.263 Sum_probs=125.5
Q ss_pred hhcccCCccccccHHHHHHHHhccCCcceEEecCCCCCCcccccCCCCCCCCCeEEeeecccCCCCCccccccchhhhhh
Q 017897 75 MERKMGESFKDCEMRDLVDMLSKLNPMAAEFVPPSLANGQIFNFNPAFFGPNGFGYTNNFIMHTDGTANTNGHTTTRRKR 154 (364)
Q Consensus 75 ~~~~~g~~~~~~~~~~L~~~Fs~~G~i~~v~v~~d~~t~~s~~~~~~~~~~~GfaFV~f~~~~~~~~~~~~a~~~~a~~~ 154 (364)
.+.++|.|+-++++.+|+.+|.+||.|.+|.|++ .||||...+ .. .|+. |+..
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvK------------------NYgFVHiEd-kt------aaed--airN 55 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVK------------------NYGFVHIED-KT------AAED--AIRN 55 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeec------------------ccceEEeec-cc------ccHH--HHhh
Confidence 4678999999999999999999999999999876 789999988 44 3666 8886
Q ss_pred cCCC--CCccccccCCcccccCCCCCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHH
Q 017897 155 NGYS--QGKRRMNCRTSNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGAR 232 (364)
Q Consensus 155 ~~~~--~g~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~~~~rG~aFV~F~~~~~A~ 232 (364)
+++. .|.. +.+..++.......+|+||||.+.++.++|+..|.+||+|.+|.|++| |+||+|+-.++|.
T Consensus 56 LhgYtLhg~n---InVeaSksKsk~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd------y~fvh~d~~eda~ 126 (346)
T KOG0109|consen 56 LHGYTLHGVN---INVEASKSKSKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD------YAFVHFDRAEDAV 126 (346)
T ss_pred cccceecceE---EEEEeccccCCCccccccCCCCccccCHHHhhhhcccCCceeeeeecc------eeEEEEeeccchH
Confidence 7665 6665 555555555666789999999999999999999999999999999975 9999999999999
Q ss_pred HHHH-ccccccCCeeEEEeeCCC
Q 017897 233 AALS-LAGTMLGFYPVRVLPSKT 254 (364)
Q Consensus 233 ~al~-l~g~~l~g~~i~V~~a~~ 254 (364)
.|++ |++..+.|++++|..+..
T Consensus 127 ~air~l~~~~~~gk~m~vq~sts 149 (346)
T KOG0109|consen 127 EAIRGLDNTEFQGKRMHVQLSTS 149 (346)
T ss_pred HHHhcccccccccceeeeeeecc
Confidence 9998 999999999999998754
No 42
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.77 E-value=3.8e-17 Score=153.42 Aligned_cols=159 Identities=17% Similarity=0.144 Sum_probs=123.4
Q ss_pred ccchhcccCCccccccHHHHHHHH-hccCCcceEEecCCCCCCcccccCCCCCCCCCeEEeeecccCCCCCccccccchh
Q 017897 72 DNHMERKMGESFKDCEMRDLVDML-SKLNPMAAEFVPPSLANGQIFNFNPAFFGPNGFGYTNNFIMHTDGTANTNGHTTT 150 (364)
Q Consensus 72 ~~~~~~~~g~~~~~~~~~~L~~~F-s~~G~i~~v~v~~d~~t~~s~~~~~~~~~~~GfaFV~f~~~~~~~~~~~~a~~~~ 150 (364)
...+..++-.++|+.-.++|+++| .+.|+|+.|.+..|...+.. |+|.|+|+. ++ .+++
T Consensus 42 ~r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~r-----------GcavVEFk~-~E------~~qK-- 101 (608)
T KOG4212|consen 42 ARDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKAR-----------GCAVVEFKD-PE------NVQK-- 101 (608)
T ss_pred cccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcC-----------CceEEEeeC-HH------HHHH--
Confidence 344557889999999999999999 47899999999999876644 999999999 66 5888
Q ss_pred hhhhcCCC--CCccccccCCcccc--------------------------------------------c-----------
Q 017897 151 RRKRNGYS--QGKRRMNCRTSNAQ--------------------------------------------Q----------- 173 (364)
Q Consensus 151 a~~~~~~~--~g~~~~~~~~~~~~--------------------------------------------~----------- 173 (364)
|++.+|.. .|++.+.......+ +
T Consensus 102 a~E~lnk~~~~GR~l~vKEd~d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t 181 (608)
T KOG4212|consen 102 ALEKLNKYEVNGRELVVKEDHDEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNT 181 (608)
T ss_pred HHHHhhhccccCceEEEeccCchhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCc
Confidence 88888765 56552211100000 0
Q ss_pred -----------------------------CCCCCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCC-CCCceEEEE
Q 017897 174 -----------------------------DEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP-NSVLRFAFV 223 (364)
Q Consensus 174 -----------------------------~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~-~~~rG~aFV 223 (364)
.+....++||+||...+..+.|++.|.-.|.|..+.+-.|+ +.++|||.+
T Consensus 182 ~t~~~~~~~~~~~~lfgl~~~Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKeG~s~G~~vi 261 (608)
T KOG4212|consen 182 NTMSNDYNNSSNYNLFGLSASFLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKEGNSRGFAVI 261 (608)
T ss_pred cccccccccchhhhcccchhhhhhhccCCCCCccceeeeeccccccchHHHHHHhccceeeeeeceeeccccccCCeeEE
Confidence 01123459999999999999999999999999999999988 568999999
Q ss_pred EeCCHHHHHHHHH-ccccccCCeeEEEe
Q 017897 224 EFTDEEGARAALS-LAGTMLGFYPVRVL 250 (364)
Q Consensus 224 ~F~~~~~A~~al~-l~g~~l~g~~i~V~ 250 (364)
+|..+-+|-.||. +++.-+..++..+.
T Consensus 262 ~y~hpveavqaIsml~~~g~~~~~~~~R 289 (608)
T KOG4212|consen 262 EYDHPVEAVQAISMLDRQGLFDRRMTVR 289 (608)
T ss_pred EecchHHHHHHHHhhccCCCccccceee
Confidence 9999999999998 87655555554443
No 43
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.73 E-value=6.7e-17 Score=154.33 Aligned_cols=250 Identities=21% Similarity=0.215 Sum_probs=178.8
Q ss_pred hcccCCccccccHHHHHHHHhccCCcceEEecCCCCCCcccccCCCCCCCCCeEEeeecccCCCCCccccccchhhhhhc
Q 017897 76 ERKMGESFKDCEMRDLVDMLSKLNPMAAEFVPPSLANGQIFNFNPAFFGPNGFGYTNNFIMHTDGTANTNGHTTTRRKRN 155 (364)
Q Consensus 76 ~~~~g~~~~~~~~~~L~~~Fs~~G~i~~v~v~~d~~t~~s~~~~~~~~~~~GfaFV~f~~~~~~~~~~~~a~~~~a~~~~ 155 (364)
.+..-||+|.||++||.++|+.++ |.++.+.+ .+++. . |=|||.|.+ .+ |+.. |+++.
T Consensus 12 ~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r--~~Gr~-s---------GeA~Ve~~s-ee------dv~~--Alkkd 69 (510)
T KOG4211|consen 12 EVRLRGLPWSATEKEILDFFSNCG-IENLEIPR--RNGRP-S---------GEAYVEFTS-EE------DVEK--ALKKD 69 (510)
T ss_pred EEEecCCCccccHHHHHHHHhcCc-eeEEEEec--cCCCc-C---------cceEEEeec-hH------HHHH--HHHhh
Confidence 445689999999999999999985 67755544 45554 4 999999999 67 6888 88765
Q ss_pred CCCCCccccccCCc------cccc-----CCCCCcEEEEeCCCCCCcHHHHHHHhhcCCCeeE-EEEecCC-CCCceEEE
Q 017897 156 GYSQGKRRMNCRTS------NAQQ-----DEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVD-CRICGDP-NSVLRFAF 222 (364)
Q Consensus 156 ~~~~g~~~~~~~~~------~~~~-----~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~-~~i~~d~-~~~rG~aF 222 (364)
-...|.+.|.+-.. +.-+ .......|-+++||+.+|++||.++|+..-.+.. +.++.|+ .++.|-||
T Consensus 70 R~~mg~RYIEVf~~~~~e~d~~~~~~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAf 149 (510)
T KOG4211|consen 70 RESMGHRYIEVFTAGGAEADWVMRPGGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAF 149 (510)
T ss_pred HHHhCCceEEEEccCCccccccccCCCCCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceE
Confidence 55555553333221 1111 1123456999999999999999999997755544 4456665 45789999
Q ss_pred EEeCCHHHHHHHHHccccccCCeeEEEeeCCCC-----C------CCCCCCC----------------------------
Q 017897 223 VEFTDEEGARAALSLAGTMLGFYPVRVLPSKTA-----I------APVNPTF---------------------------- 263 (364)
Q Consensus 223 V~F~~~~~A~~al~l~g~~l~g~~i~V~~a~~~-----~------~~~~~~~---------------------------- 263 (364)
|+|++.+.|++||.-+...|+.+-|.|..+... . ...+.++
T Consensus 150 VqF~sqe~ae~Al~rhre~iGhRYIEvF~Ss~~e~~~~~~~~~~~~~rpGpy~~~~a~Rg~~d~~~~~~~~~~~~r~g~~ 229 (510)
T KOG4211|consen 150 VQFESQESAEIALGRHRENIGHRYIEVFRSSRAEVKRAAGPGDGRVGRPGPYDRPGAPRGGYDYGQGRDPGRNATRYGAG 229 (510)
T ss_pred EEecCHHHHHHHHHHHHHhhccceEEeehhHHHHHHhhccccccccCCCCccccccCCccccccccccCCCccccccccc
Confidence 999999999999998888899999999765320 0 0000000
Q ss_pred -----------------------------CCCC-ccc----------cccCceEEEEeCCCCCCCHHHHHHHhhhcCCce
Q 017897 264 -----------------------------LPRS-EDE----------REMCSRTIYCTNIDKKVTQGDIKLFFESVCGEV 303 (364)
Q Consensus 264 -----------------------------~~~~-~~~----------~~~~~~~l~V~nLp~~~tee~L~~~F~~~~G~I 303 (364)
.+.. ... -......++.++||+..++.++..+|+. ...
T Consensus 230 ~~g~~g~~~~~~~~d~~~~gs~~~~~~~~~~~~~g~~~~g~~g~~~~~~~~g~fv~MRGlpy~a~~~di~nfFsp--l~p 307 (510)
T KOG4211|consen 230 GEGYYGFSRYPSLQDYGNFGSYGGGRDPNYPVSSGPHRQGGAGDYGNGGPGGHFVHMRGLPYDATENDIANFFSP--LNP 307 (510)
T ss_pred cCCccccccCccccccccccccccccccccCCCCCcccCCCcccccCCCCCCceeeecCCCccCCCcchhhhcCC--CCc
Confidence 0000 000 0112357888999999999999999996 466
Q ss_pred eEEEEeccC-CCCeeEEEEEecCHHHHHHHHhcCCCeeCCeeeEEee
Q 017897 304 QRLRLLGDY-QHSTRIAFVEFAMAESAIAALNCSGAVLGSLPIRVSP 349 (364)
Q Consensus 304 ~~v~i~~d~-~~~kg~afV~F~~~e~A~~Al~lng~~~~g~~l~V~~ 349 (364)
..|.|-... ++..|-|+|+|.++++|..|+.-++..+..+.|.+-.
T Consensus 308 ~~v~i~ig~dGr~TGEAdveF~t~edav~Amskd~anm~hrYVElFl 354 (510)
T KOG4211|consen 308 YRVHIEIGPDGRATGEADVEFATGEDAVGAMGKDGANMGHRYVELFL 354 (510)
T ss_pred eeEEEEeCCCCccCCcceeecccchhhHhhhccCCcccCcceeeecc
Confidence 677776554 7899999999999999999998777777777666554
No 44
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.71 E-value=3.8e-16 Score=136.22 Aligned_cols=169 Identities=25% Similarity=0.376 Sum_probs=137.6
Q ss_pred CcEEEEeCCCCCCcHHHHHH----HhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-ccccccCCeeEEEeeC
Q 017897 178 RRTVYVSDIDQQVTEEQLAT----LFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPS 252 (364)
Q Consensus 178 ~~~lfV~nLp~~~te~~L~~----~F~~~G~i~~~~i~~d~~~~rG~aFV~F~~~~~A~~al~-l~g~~l~g~~i~V~~a 252 (364)
..||||.||+..+..++|+. +|++||.|++|.....+ +.||-|||.|.+.+.|..|++ |+|..+-|++++|.+|
T Consensus 9 n~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~-KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqyA 87 (221)
T KOG4206|consen 9 NGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTP-KMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQYA 87 (221)
T ss_pred CceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCC-CccCceEEEecChhHHHHHHHHhcCCcccCchhheecc
Confidence 34999999999999998887 99999999999877643 467999999999999999998 9999999999999998
Q ss_pred CCCCCCC---CCCCC---------------------------------CCCccccccCceEEEEeCCCCCCCHHHHHHHh
Q 017897 253 KTAIAPV---NPTFL---------------------------------PRSEDEREMCSRTIYCTNIDKKVTQGDIKLFF 296 (364)
Q Consensus 253 ~~~~~~~---~~~~~---------------------------------~~~~~~~~~~~~~l~V~nLp~~~tee~L~~~F 296 (364)
+....-. .+.+. +........+...|++.|||.+++.+.|..+|
T Consensus 88 ~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e~l~~lf 167 (221)
T KOG4206|consen 88 KSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESESEMLSDLF 167 (221)
T ss_pred cCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhHHHHHHHH
Confidence 6521100 00000 00002225677899999999999999999999
Q ss_pred hhcCCceeEEEEeccCCCCeeEEEEEecCHHHHHHHHh-cCCCeeC-CeeeEEeecC
Q 017897 297 ESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLG-SLPIRVSPSK 351 (364)
Q Consensus 297 ~~~~G~I~~v~i~~d~~~~kg~afV~F~~~e~A~~Al~-lng~~~~-g~~l~V~~ak 351 (364)
++| .....++++... .+.|||+|.+...|..|.. +.+..+- ...++|.+++
T Consensus 168 ~qf-~g~keir~i~~~---~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 168 EQF-PGFKEIRLIPPR---SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFAK 220 (221)
T ss_pred hhC-cccceeEeccCC---CceeEEecchhhhhHHHhhhhccceeccCceEEecccC
Confidence 997 888888888753 3599999999999999999 9999886 8899999875
No 45
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.69 E-value=3.5e-17 Score=162.10 Aligned_cols=161 Identities=19% Similarity=0.227 Sum_probs=130.4
Q ss_pred cccCCccccccHHHHHHHHhccCCcceEEecCCCCCCcccccCCCCCCCCCeEEeeecccCCCCCccccccchhhhhhcC
Q 017897 77 RKMGESFKDCEMRDLVDMLSKLNPMAAEFVPPSLANGQIFNFNPAFFGPNGFGYTNNFIMHTDGTANTNGHTTTRRKRNG 156 (364)
Q Consensus 77 ~~~g~~~~~~~~~~L~~~Fs~~G~i~~v~v~~d~~t~~s~~~~~~~~~~~GfaFV~f~~~~~~~~~~~~a~~~~a~~~~~ 156 (364)
.++-.|.|+|+.++|..+|++.|.|.++.|...+...+..+ +.|||||.|.+ ++ +|+. |++.++
T Consensus 518 lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~l-------SmGfgFVEF~~-~e------~A~~--a~k~lq 581 (725)
T KOG0110|consen 518 LFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYL-------SMGFGFVEFAK-PE------SAQA--ALKALQ 581 (725)
T ss_pred hhhhcCCcccchhHHHHHHHhcCeEEEEEEecccccccccc-------ccceeEEEecC-HH------HHHH--HHHHhc
Confidence 56678999999999999999999999998887665432213 23999999999 66 6888 999998
Q ss_pred CC--CCccccccCCcc--------cccC-CCCCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCC--CCCceEEEE
Q 017897 157 YS--QGKRRMNCRTSN--------AQQD-EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP--NSVLRFAFV 223 (364)
Q Consensus 157 ~~--~g~~~~~~~~~~--------~~~~-~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~--~~~rG~aFV 223 (364)
+. +|.. +.+++.. .+.. .....+|+|.|||...+..+++++|..||.|.+|+|+.-. ..+||||||
T Consensus 582 gtvldGH~-l~lk~S~~k~~~~~gK~~~~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv 660 (725)
T KOG0110|consen 582 GTVLDGHK-LELKISENKPASTVGKKKSKKKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFV 660 (725)
T ss_pred CceecCce-EEEEeccCccccccccccccccccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceee
Confidence 76 6665 3333333 1111 1113579999999999999999999999999999999864 346999999
Q ss_pred EeCCHHHHHHHHH-ccccccCCeeEEEeeCCC
Q 017897 224 EFTDEEGARAALS-LAGTMLGFYPVRVLPSKT 254 (364)
Q Consensus 224 ~F~~~~~A~~al~-l~g~~l~g~~i~V~~a~~ 254 (364)
+|-++.+|..|+. |..+-|-||.|.+.|+..
T Consensus 661 ~f~t~~ea~nA~~al~STHlyGRrLVLEwA~~ 692 (725)
T KOG0110|consen 661 DFLTPREAKNAFDALGSTHLYGRRLVLEWAKS 692 (725)
T ss_pred eccCcHHHHHHHHhhcccceechhhheehhcc
Confidence 9999999999998 888889999999999853
No 46
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.67 E-value=2.9e-15 Score=139.88 Aligned_cols=170 Identities=26% Similarity=0.296 Sum_probs=134.6
Q ss_pred CcEEEEeCCC-CCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-ccccccCCeeEEEeeCCCC
Q 017897 178 RRTVYVSDID-QQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSKTA 255 (364)
Q Consensus 178 ~~~lfV~nLp-~~~te~~L~~~F~~~G~i~~~~i~~d~~~~rG~aFV~F~~~~~A~~al~-l~g~~l~g~~i~V~~a~~~ 255 (364)
...|.|.||. ..+|.+.|..+|+.||.|..|+|+..+. --|.|+|.+...|..|++ |+|+.+.|++|+|.+++..
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkk---d~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~ 373 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKK---DNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHT 373 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCC---cceeeeecchhHHHHHHHHhhcceecCceEEEeeccCc
Confidence 4668889886 5689999999999999999999999775 369999999999999998 9999999999999998753
Q ss_pred CCCCCC----------CCC---------C--CCccccccCceEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccCCC
Q 017897 256 IAPVNP----------TFL---------P--RSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQH 314 (364)
Q Consensus 256 ~~~~~~----------~~~---------~--~~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~~~ 314 (364)
.-.... .+. | +.....-++..+|++.|+|.+++||+|+.+|.+. |...+....-. +
T Consensus 374 ~vqlp~egq~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~~-g~~vkafkff~--k 450 (492)
T KOG1190|consen 374 NVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEP-GGQVKAFKFFQ--K 450 (492)
T ss_pred cccCCCCCCccccccccCCCCchhhccCcccccccccCCchhheeeccCCcccchhHHHHhhhcC-CceEEeeeecC--C
Confidence 211110 000 0 0011113567799999999999999999999996 87655544322 2
Q ss_pred CeeEEEEEecCHHHHHHHHh-cCCCeeCCe-eeEEeecCCC
Q 017897 315 STRIAFVEFAMAESAIAALN-CSGAVLGSL-PIRVSPSKTP 353 (364)
Q Consensus 315 ~kg~afV~F~~~e~A~~Al~-lng~~~~g~-~l~V~~ak~~ 353 (364)
.+-+|++.+.+.|.|..|+. ++...+++. .|+|+|++..
T Consensus 451 d~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSFSks~ 491 (492)
T KOG1190|consen 451 DRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSFSKST 491 (492)
T ss_pred CcceeecccCChhHhhhhccccccccCCCCceEEEEeeccc
Confidence 34499999999999999999 999988765 9999999864
No 47
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.67 E-value=1.6e-15 Score=142.54 Aligned_cols=176 Identities=23% Similarity=0.263 Sum_probs=143.3
Q ss_pred CCcEEEEeCCCCCCcHHHHHHHhh-cCCCeeEEEEecCC-CCCceEEEEEeCCHHHHHHHHH-ccccccCCeeEEEeeCC
Q 017897 177 IRRTVYVSDIDQQVTEEQLATLFL-TCGQVVDCRICGDP-NSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSK 253 (364)
Q Consensus 177 ~~~~lfV~nLp~~~te~~L~~~F~-~~G~i~~~~i~~d~-~~~rG~aFV~F~~~~~A~~al~-l~g~~l~g~~i~V~~a~ 253 (364)
..+.+||.|||.++.+++|+++|. +.|+|+.|.++.|. +++||+|.|+|+++|.+++|++ ||.+.+.||+|.|+...
T Consensus 43 r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~ 122 (608)
T KOG4212|consen 43 RDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKEDH 122 (608)
T ss_pred ccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEeccC
Confidence 456799999999999999999998 67999999999997 6789999999999999999999 99999999999998653
Q ss_pred CCCC-------------------------CCCC----------CCCCCCcc-----------------------------
Q 017897 254 TAIA-------------------------PVNP----------TFLPRSED----------------------------- 269 (364)
Q Consensus 254 ~~~~-------------------------~~~~----------~~~~~~~~----------------------------- 269 (364)
.... ..+. .+.+++.+
T Consensus 123 d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~~~ 202 (608)
T KOG4212|consen 123 DEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLSAS 202 (608)
T ss_pred chhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccchhh
Confidence 2000 0000 01111100
Q ss_pred -------ccccCceEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccC-CCCeeEEEEEecCHHHHHHHHh-cCCCee
Q 017897 270 -------EREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY-QHSTRIAFVEFAMAESAIAALN-CSGAVL 340 (364)
Q Consensus 270 -------~~~~~~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~-~~~kg~afV~F~~~e~A~~Al~-lng~~~ 340 (364)
-.++....+||.||...+....|++.|.-. |.|..|.+-.|+ +.++|++.++|..+-.|..||. +++.-+
T Consensus 203 Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmA-Gkv~~vdf~idKeG~s~G~~vi~y~hpveavqaIsml~~~g~ 281 (608)
T KOG4212|consen 203 FLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMA-GKVQSVDFSIDKEGNSRGFAVIEYDHPVEAVQAISMLDRQGL 281 (608)
T ss_pred hhhhccCCCCCccceeeeeccccccchHHHHHHhccc-eeeeeeceeeccccccCCeeEEEecchHHHHHHHHhhccCCC
Confidence 013345689999999999999999999987 999999988886 7899999999999999999999 888777
Q ss_pred CCeeeEEeecCCC
Q 017897 341 GSLPIRVSPSKTP 353 (364)
Q Consensus 341 ~g~~l~V~~ak~~ 353 (364)
.+++..+....-+
T Consensus 282 ~~~~~~~Rl~~~~ 294 (608)
T KOG4212|consen 282 FDRRMTVRLDRIP 294 (608)
T ss_pred ccccceeeccccc
Confidence 8888887775443
No 48
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.67 E-value=1.9e-15 Score=144.53 Aligned_cols=168 Identities=25% Similarity=0.260 Sum_probs=133.7
Q ss_pred CCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHHccccccCCeeEEEeeCCCCC
Q 017897 177 IRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSKTAI 256 (364)
Q Consensus 177 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~~~~rG~aFV~F~~~~~A~~al~l~g~~l~g~~i~V~~a~~~~ 256 (364)
...-|-+.+||+++|+++|.++|+.+ .|+.+.+.++.++..|-|||+|.+++++++|++.+...+..+-|.|..+....
T Consensus 9 ~~~~vr~rGLPwsat~~ei~~Ff~~~-~I~~~~~~r~~Gr~sGeA~Ve~~seedv~~AlkkdR~~mg~RYIEVf~~~~~e 87 (510)
T KOG4211|consen 9 TAFEVRLRGLPWSATEKEILDFFSNC-GIENLEIPRRNGRPSGEAYVEFTSEEDVEKALKKDRESMGHRYIEVFTAGGAE 87 (510)
T ss_pred cceEEEecCCCccccHHHHHHHHhcC-ceeEEEEeccCCCcCcceEEEeechHHHHHHHHhhHHHhCCceEEEEccCCcc
Confidence 34568889999999999999999998 47888888887888899999999999999999999999999999998875432
Q ss_pred CCCCCCCCCCCccccccCceEEEEeCCCCCCCHHHHHHHhhhcCCceeE--EEEeccC-CCCeeEEEEEecCHHHHHHHH
Q 017897 257 APVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQR--LRLLGDY-QHSTRIAFVEFAMAESAIAAL 333 (364)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~--v~i~~d~-~~~kg~afV~F~~~e~A~~Al 333 (364)
.. ..+.+.... .....-.|.+++||+.++++||.++|+.. .|.. +.++.+. +++.|-|||+|++.+.|++||
T Consensus 88 ~d--~~~~~~g~~-s~~~d~vVRLRGLPfscte~dI~~FFaGL--~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al 162 (510)
T KOG4211|consen 88 AD--WVMRPGGPN-SSANDGVVRLRGLPFSCTEEDIVEFFAGL--EIVPDGILLPMDQRGRPTGEAFVQFESQESAEIAL 162 (510)
T ss_pred cc--ccccCCCCC-CCCCCceEEecCCCccCcHHHHHHHhcCC--cccccceeeeccCCCCcccceEEEecCHHHHHHHH
Confidence 21 111111111 12345789999999999999999999965 4433 3344554 689999999999999999999
Q ss_pred hcCCCeeCCeeeEEeec
Q 017897 334 NCSGAVLGSLPIRVSPS 350 (364)
Q Consensus 334 ~lng~~~~g~~l~V~~a 350 (364)
.-|-..|+.|.|.|-.+
T Consensus 163 ~rhre~iGhRYIEvF~S 179 (510)
T KOG4211|consen 163 GRHRENIGHRYIEVFRS 179 (510)
T ss_pred HHHHHhhccceEEeehh
Confidence 87777888888887654
No 49
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.67 E-value=6.7e-16 Score=130.10 Aligned_cols=81 Identities=22% Similarity=0.344 Sum_probs=75.3
Q ss_pred CceEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccC--CCCeeEEEEEecCHHHHHHHHh-cCCCeeCCeeeEEeec
Q 017897 274 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSPS 350 (364)
Q Consensus 274 ~~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~--~~~kg~afV~F~~~e~A~~Al~-lng~~~~g~~l~V~~a 350 (364)
..++|||+|||..+++++|+++|++| |.|.+|.|+.+. ++++|||||+|.+.++|.+|+. ||+..|+|+.|+|.|+
T Consensus 33 ~~~~lfVgnL~~~~te~~L~~~F~~~-G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a 111 (144)
T PLN03134 33 MSTKLFIGGLSWGTDDASLRDAFAHF-GDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111 (144)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcC-CCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeC
Confidence 45789999999999999999999996 999999999885 6899999999999999999999 9999999999999999
Q ss_pred CCCCC
Q 017897 351 KTPVR 355 (364)
Q Consensus 351 k~~~~ 355 (364)
+++..
T Consensus 112 ~~~~~ 116 (144)
T PLN03134 112 NDRPS 116 (144)
T ss_pred CcCCC
Confidence 86543
No 50
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.66 E-value=1.1e-15 Score=128.87 Aligned_cols=78 Identities=28% Similarity=0.474 Sum_probs=73.2
Q ss_pred CCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEeCCHHHHHHHHH-ccccccCCeeEEEeeCC
Q 017897 177 IRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSK 253 (364)
Q Consensus 177 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~~--~~rG~aFV~F~~~~~A~~al~-l~g~~l~g~~i~V~~a~ 253 (364)
..++|||+|||+++++++|+++|++||.|.+++++.|+. +++|||||+|.+.++|++||+ |+++.|.|++|+|.++.
T Consensus 33 ~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a~ 112 (144)
T PLN03134 33 MSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPAN 112 (144)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeCC
Confidence 467899999999999999999999999999999999874 479999999999999999998 99999999999999986
Q ss_pred C
Q 017897 254 T 254 (364)
Q Consensus 254 ~ 254 (364)
.
T Consensus 113 ~ 113 (144)
T PLN03134 113 D 113 (144)
T ss_pred c
Confidence 4
No 51
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.64 E-value=3.4e-16 Score=137.78 Aligned_cols=158 Identities=26% Similarity=0.325 Sum_probs=129.8
Q ss_pred cEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-ccccccCCeeEEEeeCCCCCC
Q 017897 179 RTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSKTAIA 257 (364)
Q Consensus 179 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~~~~rG~aFV~F~~~~~A~~al~-l~g~~l~g~~i~V~~a~~~~~ 257 (364)
..+|||+||+.+.+.+|+.+|..||.|.++.+.. ||+||+|++..+|..|+. +++.+|.|..+.|.|+.....
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~------gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~~~ 75 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMKN------GFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGKRR 75 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceeec------ccceeccCchhhhhcccchhcCceecceeeeeeccccccc
Confidence 4689999999999999999999999999998865 799999999999999997 999999998899999874211
Q ss_pred CC-CCC--CC---CCCccccccCceEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccCCCCeeEEEEEecCHHHHHH
Q 017897 258 PV-NPT--FL---PRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIA 331 (364)
Q Consensus 258 ~~-~~~--~~---~~~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~e~A~~ 331 (364)
.. .+. .. ...........+.+.|.+++..+.+.+|.+.|+++ |.+....+. .+++||+|.+.++|..
T Consensus 76 ~~g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~-g~~~~~~~~------~~~~~v~Fs~~~da~r 148 (216)
T KOG0106|consen 76 GRGRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPA-GEVTYVDAR------RNFAFVEFSEQEDAKR 148 (216)
T ss_pred ccCCCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhccc-CCCchhhhh------ccccceeehhhhhhhh
Confidence 11 000 10 11111224566889999999999999999999997 999665552 3489999999999999
Q ss_pred HHh-cCCCeeCCeeeEEee
Q 017897 332 ALN-CSGAVLGSLPIRVSP 349 (364)
Q Consensus 332 Al~-lng~~~~g~~l~V~~ 349 (364)
|+. |++..+.++.|.+..
T Consensus 149 a~~~l~~~~~~~~~l~~~~ 167 (216)
T KOG0106|consen 149 ALEKLDGKKLNGRRISVEK 167 (216)
T ss_pred cchhccchhhcCceeeecc
Confidence 999 999999999999943
No 52
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.63 E-value=1.3e-15 Score=135.14 Aligned_cols=77 Identities=22% Similarity=0.452 Sum_probs=70.9
Q ss_pred CCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEeCCHHHHHHHHH-ccccccCCeeEEEeeCC
Q 017897 177 IRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSK 253 (364)
Q Consensus 177 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~~--~~rG~aFV~F~~~~~A~~al~-l~g~~l~g~~i~V~~a~ 253 (364)
+.|+|||-.||.+..+.+|..+|-.||.|++.++..|+- .||.||||.|+++.+|..||. +||..|+=++|+|...+
T Consensus 284 eGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQLKR 363 (371)
T KOG0146|consen 284 EGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKR 363 (371)
T ss_pred CcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhhhcC
Confidence 468899999999999999999999999999999999984 579999999999999999998 99999998888887643
No 53
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.63 E-value=1.9e-14 Score=134.54 Aligned_cols=241 Identities=19% Similarity=0.207 Sum_probs=166.8
Q ss_pred cccCCccccccHHHHHHHHhccCCcceEEecCCCCCCcccccCCCCCCCCCeEEeeecccCCCCCccccccchhhhhhcC
Q 017897 77 RKMGESFKDCEMRDLVDMLSKLNPMAAEFVPPSLANGQIFNFNPAFFGPNGFGYTNNFIMHTDGTANTNGHTTTRRKRNG 156 (364)
Q Consensus 77 ~~~g~~~~~~~~~~L~~~Fs~~G~i~~v~v~~d~~t~~s~~~~~~~~~~~GfaFV~f~~~~~~~~~~~~a~~~~a~~~~~ 156 (364)
...+.++|++++.||.+++..||.|..+.+.+.+ .-||+.|.+..+ |+...+
T Consensus 31 ~HlRnlp~e~tE~elI~Lg~pFG~vtn~~~lkGk----------------nQAflem~d~~s------------Avtmv~ 82 (492)
T KOG1190|consen 31 VHLRNLPWEVTEEELISLGLPFGKVTNLLMLKGK----------------NQAFLEMADEES------------AVTMVN 82 (492)
T ss_pred eEeccCCccccHHHHHHhcccccceeeeeeeccc----------------hhhhhhhcchhh------------hhheee
Confidence 3458899999999999999999999998877643 346788777333 111111
Q ss_pred CC-------CCccccccC----------------------------------Ccc------cccCCCCCcEEEEeCCCCC
Q 017897 157 YS-------QGKRRMNCR----------------------------------TSN------AQQDEVIRRTVYVSDIDQQ 189 (364)
Q Consensus 157 ~~-------~g~~~~~~~----------------------------------~~~------~~~~~~~~~~lfV~nLp~~ 189 (364)
+. .|.+ +-+. ... ....+..--.++|+++-.-
T Consensus 83 ~y~~~~p~lr~~~-~yiq~sn~~~lkt~s~p~q~r~~~vy~~~s~~q~~~~~~s~~~~~~G~~~~~n~vLr~iie~m~yp 161 (492)
T KOG1190|consen 83 YYTSVTPVLRGQP-IYIQYSNHSELKTDSQPNQIRGQAVYQAVSSVQEIVLPLSASAVVVGNEDGPNPVLRTIIENMFYP 161 (492)
T ss_pred cccccCccccCcc-eeehhhhHHHHhccCchhhhhhhhHHhhhhcccccccccccccccccccCCCceeEEEEeccceee
Confidence 11 1111 0000 000 0000111124889999999
Q ss_pred CcHHHHHHHhhcCCCeeEEEEecCCCCCce-EEEEEeCCHHHHHHHHH-ccccccC-C-eeEEEeeCCCCC---------
Q 017897 190 VTEEQLATLFLTCGQVVDCRICGDPNSVLR-FAFVEFTDEEGARAALS-LAGTMLG-F-YPVRVLPSKTAI--------- 256 (364)
Q Consensus 190 ~te~~L~~~F~~~G~i~~~~i~~d~~~~rG-~aFV~F~~~~~A~~al~-l~g~~l~-g-~~i~V~~a~~~~--------- 256 (364)
++-+-|..+|++||.|..+.-.... .| -|.|+|.+.+.|..|.. |+|+.|- | +.|+|.+++...
T Consensus 162 VslDVLHqvFS~fG~VlKIiTF~Kn---n~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~Sklt~LnvKynndk 238 (492)
T KOG1190|consen 162 VSLDVLHQVFSKFGFVLKIITFTKN---NGFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFSKLTDLNVKYNNDK 238 (492)
T ss_pred eEHHHHHHHHhhcceeEEEEEEecc---cchhhhhhccchhhHHHHHHhccCCcccCceeEEEeehhhcccceeeccccc
Confidence 9999999999999999876443322 23 49999999999999987 9998764 4 478887764310
Q ss_pred --------CCCC-----------------------CCCCCCC------cccc-cc--CceEEEEeCCCC-CCCHHHHHHH
Q 017897 257 --------APVN-----------------------PTFLPRS------EDER-EM--CSRTIYCTNIDK-KVTQGDIKLF 295 (364)
Q Consensus 257 --------~~~~-----------------------~~~~~~~------~~~~-~~--~~~~l~V~nLp~-~~tee~L~~~ 295 (364)
.+.. |...|.. .+.+ .. ....|.|.||.+ .+|.+-|.-+
T Consensus 239 SRDyTnp~LP~gd~~p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vllvsnln~~~VT~d~Lftl 318 (492)
T KOG1190|consen 239 SRDYTNPDLPVGDGQPSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANVVLLVSNLNEEAVTPDVLFTL 318 (492)
T ss_pred cccccCCCCCCCccccccchhhhccccccccccCCcccCCccchhhcccccccccCCCceEEEEecCchhccchhHHHHH
Confidence 0000 0000000 0000 11 257888888865 6999999999
Q ss_pred hhhcCCceeEEEEeccCCCCeeEEEEEecCHHHHHHHHh-cCCCeeCCeeeEEeecCCC
Q 017897 296 FESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSPSKTP 353 (364)
Q Consensus 296 F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~e~A~~Al~-lng~~~~g~~l~V~~ak~~ 353 (364)
|+-| |+|.+|+|+.+++ --|+|+|.+...|.-|+. |+|..+.|++|+|.++|-.
T Consensus 319 FgvY-GdVqRVkil~nkk---d~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~ 373 (492)
T KOG1190|consen 319 FGVY-GDVQRVKILYNKK---DNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHT 373 (492)
T ss_pred Hhhh-cceEEEEeeecCC---cceeeeecchhHHHHHHHHhhcceecCceEEEeeccCc
Confidence 9986 9999999998764 369999999999999999 9999999999999998754
No 54
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.61 E-value=3.7e-14 Score=130.21 Aligned_cols=179 Identities=18% Similarity=0.267 Sum_probs=139.2
Q ss_pred cCCCCCcEEEEeCCCCCCcHHHHHHHhhcCCCee--------EEEEecCC-CCCceEEEEEeCCHHHHHHHHH-cccccc
Q 017897 173 QDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVV--------DCRICGDP-NSVLRFAFVEFTDEEGARAALS-LAGTML 242 (364)
Q Consensus 173 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~--------~~~i~~d~-~~~rG~aFV~F~~~~~A~~al~-l~g~~l 242 (364)
..+..+..|||.|||.++|-+++.++|++||.|. .|+|.++. ++-+|=|.+.|-..+++..|++ |++..+
T Consensus 129 ~~~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~ 208 (382)
T KOG1548|consen 129 PEPKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDEL 208 (382)
T ss_pred cccccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccc
Confidence 3455667899999999999999999999999873 36777766 4569999999999999999999 999999
Q ss_pred CCeeEEEeeCCCCCCC----------CCCC-------------CCCCC-ccccccCceEEEEeCCCC----CCC------
Q 017897 243 GFYPVRVLPSKTAIAP----------VNPT-------------FLPRS-EDEREMCSRTIYCTNIDK----KVT------ 288 (364)
Q Consensus 243 ~g~~i~V~~a~~~~~~----------~~~~-------------~~~~~-~~~~~~~~~~l~V~nLp~----~~t------ 288 (364)
.|+.|+|..|+-.... .... +.|.. ...+....++|.++||-- ..+
T Consensus 209 rg~~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~d 288 (382)
T KOG1548|consen 209 RGKKLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLLND 288 (382)
T ss_pred cCcEEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHHHHH
Confidence 9999999987532110 0000 12222 122355678999999832 223
Q ss_pred -HHHHHHHhhhcCCceeEEEEeccCCCCeeEEEEEecCHHHHHHHHh-cCCCeeCCeeeEEeecCCCC
Q 017897 289 -QGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSPSKTPV 354 (364)
Q Consensus 289 -ee~L~~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~e~A~~Al~-lng~~~~g~~l~V~~ak~~~ 354 (364)
+++|++-.++| |.|.+|.|.-. ++.|.+-|.|.+.+.|..||+ |+|+.|+||.|..+...-..
T Consensus 289 lkedl~eec~K~-G~v~~vvv~d~--hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~DG~t 353 (382)
T KOG1548|consen 289 LKEDLTEECEKF-GQVRKVVVYDR--HPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWDGKT 353 (382)
T ss_pred HHHHHHHHHHHh-CCcceEEEecc--CCCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeCCcc
Confidence 36777888996 99999988632 366799999999999999999 99999999999988765443
No 55
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.58 E-value=1e-14 Score=106.89 Aligned_cols=68 Identities=32% Similarity=0.549 Sum_probs=64.0
Q ss_pred EEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecC-CCCCceEEEEEeCCHHHHHHHHH-ccccccCCeeEE
Q 017897 181 VYVSDIDQQVTEEQLATLFLTCGQVVDCRICGD-PNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVR 248 (364)
Q Consensus 181 lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d-~~~~rG~aFV~F~~~~~A~~al~-l~g~~l~g~~i~ 248 (364)
|||+|||+++++++|+++|++||.|..+.+..+ .+.++|||||+|.++++|++|++ ++|..+.|++|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999996 45579999999999999999998 999999999985
No 56
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.57 E-value=3.8e-14 Score=122.90 Aligned_cols=161 Identities=20% Similarity=0.262 Sum_probs=119.2
Q ss_pred CCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEec-CCCC--CceEEEEEeCCHHHHHHHHH-ccccccC---CeeEEE
Q 017897 177 IRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICG-DPNS--VLRFAFVEFTDEEGARAALS-LAGTMLG---FYPVRV 249 (364)
Q Consensus 177 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~-d~~~--~rG~aFV~F~~~~~A~~al~-l~g~~l~---g~~i~V 249 (364)
.-+||||.+||.++...+|+.+|..|-..+.+.+.. +++. .+-+|||+|.+...|.+|+. |||..+. +..|+|
T Consensus 33 ~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhi 112 (284)
T KOG1457|consen 33 AVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHI 112 (284)
T ss_pred ccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEe
Confidence 358999999999999999999999997777766544 3332 35799999999999999998 9999986 788999
Q ss_pred eeCCCCCCCCCCC-----------------CCCC----------------------------------------------
Q 017897 250 LPSKTAIAPVNPT-----------------FLPR---------------------------------------------- 266 (364)
Q Consensus 250 ~~a~~~~~~~~~~-----------------~~~~---------------------------------------------- 266 (364)
+.++.+.....+. +..+
T Consensus 113 ElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~~~P~ 192 (284)
T KOG1457|consen 113 ELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDSKAPS 192 (284)
T ss_pred eehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhhcCCc
Confidence 8876421110000 0000
Q ss_pred Ccc---------ccccCceEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccCCCCeeEEEEEecCHHHHHHHHh-cC
Q 017897 267 SED---------EREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CS 336 (364)
Q Consensus 267 ~~~---------~~~~~~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~e~A~~Al~-ln 336 (364)
... .....+.+|||-||..+++|++|+.+|+.| -....++|-. ++ ..+.||+.|++.+.|..||. |.
T Consensus 193 a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~-~gf~~l~~~~-~~-g~~vaf~~~~~~~~at~am~~lq 269 (284)
T KOG1457|consen 193 ANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRY-PGFHILKIRA-RG-GMPVAFADFEEIEQATDAMNHLQ 269 (284)
T ss_pred ccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhC-CCceEEEEec-CC-CcceEeecHHHHHHHHHHHHHhh
Confidence 000 001134599999999999999999999998 4444455533 22 33489999999999999999 99
Q ss_pred CCee
Q 017897 337 GAVL 340 (364)
Q Consensus 337 g~~~ 340 (364)
|..|
T Consensus 270 g~~~ 273 (284)
T KOG1457|consen 270 GNLL 273 (284)
T ss_pred ccee
Confidence 9877
No 57
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.54 E-value=9.6e-14 Score=135.94 Aligned_cols=250 Identities=17% Similarity=0.208 Sum_probs=173.7
Q ss_pred cccCCccccccHHHHHHHHhcc-----------C-CcceEEecCCCCCCcccccCCCCCCCCCeEEeeecccCCCCCccc
Q 017897 77 RKMGESFKDCEMRDLVDMLSKL-----------N-PMAAEFVPPSLANGQIFNFNPAFFGPNGFGYTNNFIMHTDGTANT 144 (364)
Q Consensus 77 ~~~g~~~~~~~~~~L~~~Fs~~-----------G-~i~~v~v~~d~~t~~s~~~~~~~~~~~GfaFV~f~~~~~~~~~~~ 144 (364)
...|++.+...++.+...|..- | ++.++.+... . +|+|+.|.+ ..
T Consensus 178 ~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n~~-------~---------nfa~ie~~s-~~------ 234 (500)
T KOG0120|consen 178 LYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLNLE-------K---------NFAFIEFRS-IS------ 234 (500)
T ss_pred hcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeeccc-------c---------cceeEEecC-CC------
Confidence 3458899999999999998765 2 2555554432 3 899999999 55
Q ss_pred cccchhhhhhcCCC-CCccccccCC-----------cc-----------cccCCCCCcEEEEeCCCCCCcHHHHHHHhhc
Q 017897 145 NGHTTTRRKRNGYS-QGKRRMNCRT-----------SN-----------AQQDEVIRRTVYVSDIDQQVTEEQLATLFLT 201 (364)
Q Consensus 145 ~a~~~~a~~~~~~~-~g~~~~~~~~-----------~~-----------~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~ 201 (364)
+|.. ++...... .|.+....+. .. .........++||++||..+++.++.++...
T Consensus 235 ~at~--~~~~~~~~f~g~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~ 312 (500)
T KOG0120|consen 235 EATE--AMALDGIIFEGRPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDS 312 (500)
T ss_pred chhh--hhcccchhhCCCCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHh
Confidence 3444 33322222 3333110110 00 0011223456999999999999999999999
Q ss_pred CCCeeEEEEecCCC--CCceEEEEEeCCHHHHHHHHH-ccccccCCeeEEEeeCCCCCCCCCCCCC---------CCCc-
Q 017897 202 CGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSKTAIAPVNPTFL---------PRSE- 268 (364)
Q Consensus 202 ~G~i~~~~i~~d~~--~~rG~aFV~F~~~~~A~~al~-l~g~~l~g~~i~V~~a~~~~~~~~~~~~---------~~~~- 268 (364)
||.+...+++.|.. .++||||.+|.+......|+. |||..++++.|.|..+-......+..+. +...
T Consensus 313 fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~g~~~~~~~~~~~~~~~~~i~~~~~ 392 (500)
T KOG0120|consen 313 FGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIVGASNANVNFNISQSQVPGIPLLMT 392 (500)
T ss_pred cccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhccchhccccCCccccccccchhhhc
Confidence 99999999999885 479999999999999999999 9999999999999887543222111111 1110
Q ss_pred cccccCceEEEEeCCC--CC-CCH-------HHHHHHhhhcCCceeEEEEecc-C----CCCeeEEEEEecCHHHHHHHH
Q 017897 269 DEREMCSRTIYCTNID--KK-VTQ-------GDIKLFFESVCGEVQRLRLLGD-Y----QHSTRIAFVEFAMAESAIAAL 333 (364)
Q Consensus 269 ~~~~~~~~~l~V~nLp--~~-~te-------e~L~~~F~~~~G~I~~v~i~~d-~----~~~kg~afV~F~~~e~A~~Al 333 (364)
.....+...|.+.|+= .. ..+ |+++.-+.+| |.|.+|.++++ . .-..|-.||+|.+.+++++|+
T Consensus 393 q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~-g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~ 471 (500)
T KOG0120|consen 393 QMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKF-GAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAM 471 (500)
T ss_pred ccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhccc-CceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHH
Confidence 1112344455555541 11 122 3455666776 99999999987 2 235678999999999999999
Q ss_pred h-cCCCeeCCeeeEEeecCC
Q 017897 334 N-CSGAVLGSLPIRVSPSKT 352 (364)
Q Consensus 334 ~-lng~~~~g~~l~V~~ak~ 352 (364)
. |+|..|.++.|..+|...
T Consensus 472 ~~L~GrKF~nRtVvtsYyde 491 (500)
T KOG0120|consen 472 EELTGRKFANRTVVASYYDE 491 (500)
T ss_pred HHccCceeCCcEEEEEecCH
Confidence 9 999999999999998643
No 58
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.54 E-value=5.1e-14 Score=103.14 Aligned_cols=68 Identities=29% Similarity=0.535 Sum_probs=64.6
Q ss_pred EEEeCCCCCCCHHHHHHHhhhcCCceeEEEEecc-CCCCeeEEEEEecCHHHHHHHHh-cCCCeeCCeeeE
Q 017897 278 IYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGD-YQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIR 346 (364)
Q Consensus 278 l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d-~~~~kg~afV~F~~~e~A~~Al~-lng~~~~g~~l~ 346 (364)
|||+|||..+++++|+++|++| |.|..+.+..+ .+..+++|||+|.+.++|.+|+. |+|..++|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~-g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQF-GKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTT-STEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHh-hhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 7999999999999999999996 99999999995 57899999999999999999999 999999999986
No 59
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.53 E-value=5.3e-14 Score=127.18 Aligned_cols=76 Identities=28% Similarity=0.434 Sum_probs=71.6
Q ss_pred CcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHHccccccCCeeEEEeeCCC
Q 017897 178 RRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSKT 254 (364)
Q Consensus 178 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~~~~rG~aFV~F~~~~~A~~al~l~g~~l~g~~i~V~~a~~ 254 (364)
.++|||+|||+.+++++|+++|+.||.|.+|+|+.|.. ++|||||+|.++++|+.||.|+|..|.|++|.|.++..
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~-~~GfAFVtF~d~eaAe~AllLnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE-RSQIAYVTFKDPQGAETALLLSGATIVDQSVTITPAED 79 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC-CCCEEEEEeCcHHHHHHHHHhcCCeeCCceEEEEeccC
Confidence 57999999999999999999999999999999999874 46999999999999999999999999999999999864
No 60
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.52 E-value=2e-13 Score=125.46 Aligned_cols=156 Identities=28% Similarity=0.380 Sum_probs=117.6
Q ss_pred CcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCC--CCCceEEEEEeCCHHHHHHHHH-ccccccCCeeEEEeeCCC
Q 017897 178 RRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP--NSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSKT 254 (364)
Q Consensus 178 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~--~~~rG~aFV~F~~~~~A~~al~-l~g~~l~g~~i~V~~a~~ 254 (364)
.++|||+|||.++++++|+++|..||.|..+.+..|+ +.++|||||+|.++++|..|++ +++..+.|++|.|.++..
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 5899999999999999999999999999999999997 5689999999999999999998 999999999999999642
Q ss_pred ---CCCCCCC----C---CCCCCccccccCceEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccCC--CCeeEEEEE
Q 017897 255 ---AIAPVNP----T---FLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQ--HSTRIAFVE 322 (364)
Q Consensus 255 ---~~~~~~~----~---~~~~~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~~--~~kg~afV~ 322 (364)
....... . ...............+++.+++..++..++...|..+ |.+....+..... ......++.
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 273 (306)
T COG0724 195 ASQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSR-GDIVRASLPPSKDGKIPKSRSFVG 273 (306)
T ss_pred ccccccccccccchhhhccccccccccccccceeeccccccccchhHHHHhcccc-ccceeeeccCCCCCcccccccccc
Confidence 1111100 0 0011112224567899999999999999999999996 9997776665442 233333444
Q ss_pred ecCHHHHHHHHh
Q 017897 323 FAMAESAIAALN 334 (364)
Q Consensus 323 F~~~e~A~~Al~ 334 (364)
+.....+..+..
T Consensus 274 ~~~~~~~~~~~~ 285 (306)
T COG0724 274 NEASKDALESNS 285 (306)
T ss_pred hhHHHhhhhhhc
Confidence 444444444444
No 61
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.50 E-value=7.2e-14 Score=127.46 Aligned_cols=82 Identities=22% Similarity=0.299 Sum_probs=76.4
Q ss_pred cCCCCCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-ccccccCCeeEEEee
Q 017897 173 QDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLP 251 (364)
Q Consensus 173 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~~~~rG~aFV~F~~~~~A~~al~-l~g~~l~g~~i~V~~ 251 (364)
......+.|+|.|||...-+.||+.+|.+||.|++|.|+.+...|||||||+|++.++|++|.+ |+|..+.||+|+|..
T Consensus 91 ~s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~ 170 (376)
T KOG0125|consen 91 SSKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNN 170 (376)
T ss_pred CCCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEec
Confidence 3445568999999999999999999999999999999999888899999999999999999997 999999999999998
Q ss_pred CCC
Q 017897 252 SKT 254 (364)
Q Consensus 252 a~~ 254 (364)
+..
T Consensus 171 ATa 173 (376)
T KOG0125|consen 171 ATA 173 (376)
T ss_pred cch
Confidence 864
No 62
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.50 E-value=5.9e-14 Score=122.98 Aligned_cols=77 Identities=19% Similarity=0.286 Sum_probs=70.7
Q ss_pred CcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEeCCHHHHHHHHHccccccCCeeEEEeeCCC
Q 017897 178 RRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSKT 254 (364)
Q Consensus 178 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~~--~~rG~aFV~F~~~~~A~~al~l~g~~l~g~~i~V~~a~~ 254 (364)
-.+||||||+++++.+.|+++|++||+|+++.|+.|+. +|||||||+|.+.++|.+|++=..-.|+||+-.+..+..
T Consensus 12 ~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~piIdGR~aNcnlA~l 90 (247)
T KOG0149|consen 12 FTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPNPIIDGRKANCNLASL 90 (247)
T ss_pred EEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCCCcccccccccchhhh
Confidence 46899999999999999999999999999999999985 589999999999999999999666789999988887755
No 63
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.50 E-value=7.5e-14 Score=122.74 Aligned_cols=79 Identities=28% Similarity=0.381 Sum_probs=75.6
Q ss_pred CceEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccC--CCCeeEEEEEecCHHHHHHHHh-cCCCeeCCeeeEEeec
Q 017897 274 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSPS 350 (364)
Q Consensus 274 ~~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~--~~~kg~afV~F~~~e~A~~Al~-lng~~~~g~~l~V~~a 350 (364)
...+|.|.||+.+++|++|+++|.+| |.|.+|.|.+|+ |.++|||||+|.++++|.+||. |||.=++...|+|.|+
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~f-g~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEws 266 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPF-GPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWS 266 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhcc-CccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEec
Confidence 56799999999999999999999997 999999999997 7899999999999999999999 9999999999999999
Q ss_pred CCC
Q 017897 351 KTP 353 (364)
Q Consensus 351 k~~ 353 (364)
+|.
T Consensus 267 kP~ 269 (270)
T KOG0122|consen 267 KPS 269 (270)
T ss_pred CCC
Confidence 986
No 64
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.49 E-value=2.2e-13 Score=123.21 Aligned_cols=78 Identities=28% Similarity=0.457 Sum_probs=72.1
Q ss_pred CceEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccCCCCeeEEEEEecCHHHHHHHHhcCCCeeCCeeeEEeecCCC
Q 017897 274 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALNCSGAVLGSLPIRVSPSKTP 353 (364)
Q Consensus 274 ~~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~e~A~~Al~lng~~~~g~~l~V~~ak~~ 353 (364)
..++|||+|||+.+++++|+++|+.+ |.|.+|.|+++.. .+|||||+|.+.++|..||.|||..|.|+.|+|.++..-
T Consensus 3 ~~rtVfVgNLs~~tTE~dLrefFS~~-G~I~~V~I~~d~~-~~GfAFVtF~d~eaAe~AllLnG~~l~gr~V~Vt~a~~~ 80 (260)
T PLN03120 3 QVRTVKVSNVSLKATERDIKEFFSFS-GDIEYVEMQSENE-RSQIAYVTFKDPQGAETALLLSGATIVDQSVTITPAEDY 80 (260)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhc-CCeEEEEEeecCC-CCCEEEEEeCcHHHHHHHHHhcCCeeCCceEEEEeccCC
Confidence 35799999999999999999999985 9999999998863 578999999999999999999999999999999998753
No 65
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.47 E-value=9.1e-14 Score=110.60 Aligned_cols=77 Identities=32% Similarity=0.437 Sum_probs=72.2
Q ss_pred CCCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEeCCHHHHHHHHH-ccccccCCeeEEEeeC
Q 017897 176 VIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPS 252 (364)
Q Consensus 176 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~~--~~rG~aFV~F~~~~~A~~al~-l~g~~l~g~~i~V~~a 252 (364)
..+++||||||+..++|++|.++|+++|+|..|.+-.|+. +..|||||+|-+.++|+.|++ +++..+..++|.|.|.
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D 113 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWD 113 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecc
Confidence 3578999999999999999999999999999998888875 479999999999999999999 9999999999999995
No 66
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.47 E-value=2.2e-13 Score=124.29 Aligned_cols=84 Identities=20% Similarity=0.286 Sum_probs=77.1
Q ss_pred ccCceEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccCCCCeeEEEEEecCHHHHHHHHh-cCCCeeCCeeeEEeec
Q 017897 272 EMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSPS 350 (364)
Q Consensus 272 ~~~~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~e~A~~Al~-lng~~~~g~~l~V~~a 350 (364)
....++|+|.|||+...|.||+.+|++| |.|.+|.|+.++..+||||||+|++.++|++|-. |||..+.||+|.|..+
T Consensus 93 ~~~pkRLhVSNIPFrFRdpDL~aMF~kf-G~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~A 171 (376)
T KOG0125|consen 93 KDTPKRLHVSNIPFRFRDPDLRAMFEKF-GKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNA 171 (376)
T ss_pred CCCCceeEeecCCccccCccHHHHHHhh-CceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEecc
Confidence 3456899999999999999999999997 9999999999886699999999999999999999 9999999999999998
Q ss_pred CCCCCC
Q 017897 351 KTPVRP 356 (364)
Q Consensus 351 k~~~~~ 356 (364)
..++..
T Consensus 172 TarV~n 177 (376)
T KOG0125|consen 172 TARVHN 177 (376)
T ss_pred chhhcc
Confidence 776543
No 67
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.46 E-value=3.7e-13 Score=124.98 Aligned_cols=251 Identities=19% Similarity=0.154 Sum_probs=167.0
Q ss_pred cCCccccccHHHHHHHHhccCCcceEEecCCCCCCcccccCCCCCCCCCeEEeeecccCCCCCccccccchhhhhhcCCC
Q 017897 79 MGESFKDCEMRDLVDMLSKLNPMAAEFVPPSLANGQIFNFNPAFFGPNGFGYTNNFIMHTDGTANTNGHTTTRRKRNGYS 158 (364)
Q Consensus 79 ~g~~~~~~~~~~L~~~Fs~~G~i~~v~v~~d~~t~~s~~~~~~~~~~~GfaFV~f~~~~~~~~~~~~a~~~~a~~~~~~~ 158 (364)
..||.|..++.++-.+|.-..-..--+++-....++. . |.|-|.|.+ ++ + -.. |+++..+.
T Consensus 65 aRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrR-n---------ge~lvrf~d-~e---~---Rdl--alkRhkhh 125 (508)
T KOG1365|consen 65 ARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGRR-N---------GEALVRFVD-PE---G---RDL--ALKRHKHH 125 (508)
T ss_pred ecCCCCCcccCCHHHHHhhhhccccceeeeehhhhcc-c---------cceEEEecC-ch---h---hhh--hhHhhhhh
Confidence 3789999999999999875532221111222223333 3 999999999 65 2 233 45444333
Q ss_pred CCccccccCCcccc----------------cCC--CCCcEEEEeCCCCCCcHHHHHHHhhcC----CCeeEEEEecCC-C
Q 017897 159 QGKRRMNCRTSNAQ----------------QDE--VIRRTVYVSDIDQQVTEEQLATLFLTC----GQVVDCRICGDP-N 215 (364)
Q Consensus 159 ~g~~~~~~~~~~~~----------------~~~--~~~~~lfV~nLp~~~te~~L~~~F~~~----G~i~~~~i~~d~-~ 215 (364)
.|.+.+ .+..+. .-. ...-.|-.++||.++++.++.++|..- |..+.+.+++.+ +
T Consensus 126 ~g~ryi--evYka~ge~f~~iagg~s~e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdg 203 (508)
T KOG1365|consen 126 MGTRYI--EVYKATGEEFLKIAGGTSNEAAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDG 203 (508)
T ss_pred ccCCce--eeeccCchhheEecCCccccCCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCC
Confidence 222222 111111 001 112346678999999999999999732 345566666654 5
Q ss_pred CCceEEEEEeCCHHHHHHHHHccccccCCeeEEEeeCCCC--------------CCCCCCCCC---CCCccccccCceEE
Q 017897 216 SVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSKTA--------------IAPVNPTFL---PRSEDEREMCSRTI 278 (364)
Q Consensus 216 ~~rG~aFV~F~~~~~A~~al~l~g~~l~g~~i~V~~a~~~--------------~~~~~~~~~---~~~~~~~~~~~~~l 278 (364)
+..|-|||.|..+++|+.||..|...++-|.|.+..+..+ +........ |...-.......+|
T Consensus 204 rpTGdAFvlfa~ee~aq~aL~khrq~iGqRYIElFRSTaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcv 283 (508)
T KOG1365|consen 204 RPTGDAFVLFACEEDAQFALRKHRQNIGQRYIELFRSTAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCV 283 (508)
T ss_pred CcccceEEEecCHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCee
Confidence 6789999999999999999988877888888877665321 111111111 11111223346799
Q ss_pred EEeCCCCCCCHHHHHHHhhhcCCceeE--EEEecc-CCCCeeEEEEEecCHHHHHHHHh-cCCCeeCCeeeEEeec
Q 017897 279 YCTNIDKKVTQGDIKLFFESVCGEVQR--LRLLGD-YQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSPS 350 (364)
Q Consensus 279 ~V~nLp~~~tee~L~~~F~~~~G~I~~--v~i~~d-~~~~kg~afV~F~~~e~A~~Al~-lng~~~~g~~l~V~~a 350 (364)
.+++||+..+.++|..+|..|--.|.. |.+..+ .|+..|-|||+|.+.++|..|.. .+.....+|.|.|-.+
T Consensus 284 RLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~ 359 (508)
T KOG1365|consen 284 RLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNGQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPC 359 (508)
T ss_pred EecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcCCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeec
Confidence 999999999999999999987334544 776665 58999999999999999999998 7777777888887654
No 68
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.44 E-value=5.6e-13 Score=98.03 Aligned_cols=68 Identities=37% Similarity=0.568 Sum_probs=61.0
Q ss_pred EEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCCC-CCceEEEEEeCCHHHHHHHHH-ccccccCCeeEE
Q 017897 181 VYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN-SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVR 248 (364)
Q Consensus 181 lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~~-~~rG~aFV~F~~~~~A~~al~-l~g~~l~g~~i~ 248 (364)
|||+|||+++++++|+++|+.||.|..+++..++. .++|+|||+|.++++|.+|++ +++..+.|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999998764 468999999999999999999 777999999875
No 69
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.44 E-value=7.9e-13 Score=117.76 Aligned_cols=77 Identities=21% Similarity=0.252 Sum_probs=71.2
Q ss_pred CCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHHccccccCCeeEEEeeCCC
Q 017897 177 IRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSKT 254 (364)
Q Consensus 177 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~~~~rG~aFV~F~~~~~A~~al~l~g~~l~g~~i~V~~a~~ 254 (364)
...+|||+||++.+|+++|+++|+.||+|.+|+|++|.. .+|||||+|.++++|+.|+.|+|..|.+++|.|.+...
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~e-t~gfAfVtF~d~~aaetAllLnGa~l~d~~I~It~~~~ 80 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGE-YACTAYVTFKDAYALETAVLLSGATIVDQRVCITRWGQ 80 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCC-cceEEEEEECCHHHHHHHHhcCCCeeCCceEEEEeCcc
Confidence 357999999999999999999999999999999999853 45899999999999999999999999999999998654
No 70
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.44 E-value=6.2e-11 Score=110.01 Aligned_cols=249 Identities=18% Similarity=0.162 Sum_probs=170.4
Q ss_pred ccCCccccccHHHHHHHHhccCCcceEEecCCCCCCcccccCCCCCCCCCeEEeeecccCCCCCccccccchhhhhhcCC
Q 017897 78 KMGESFKDCEMRDLVDMLSKLNPMAAEFVPPSLANGQIFNFNPAFFGPNGFGYTNNFIMHTDGTANTNGHTTTRRKRNGY 157 (364)
Q Consensus 78 ~~g~~~~~~~~~~L~~~Fs~~G~i~~v~v~~d~~t~~s~~~~~~~~~~~GfaFV~f~~~~~~~~~~~~a~~~~a~~~~~~ 157 (364)
.+.||--...+.||.|-.+.||+|.-+.+|+.+ --|.|.|.+... +.+.... |....-+
T Consensus 35 hvr~l~~~v~eadl~eal~~fG~i~yvt~~P~~----------------r~alvefedi~~---akn~Vnf--aa~n~i~ 93 (494)
T KOG1456|consen 35 HVRGLHQGVVEADLVEALSNFGPIAYVTCMPHK----------------RQALVEFEDIEG---AKNCVNF--AADNQIY 93 (494)
T ss_pred EEeccccccchhHHHHHHhcCCceEEEEecccc----------------ceeeeeeccccc---hhhheeh--hccCccc
Confidence 346676777999999999999999999988753 346677776222 1111111 1111111
Q ss_pred CCCcc-ccccC----CcccccCCC-CCcEEEEeCCC--CCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHH
Q 017897 158 SQGKR-RMNCR----TSNAQQDEV-IRRTVYVSDID--QQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEE 229 (364)
Q Consensus 158 ~~g~~-~~~~~----~~~~~~~~~-~~~~lfV~nLp--~~~te~~L~~~F~~~G~i~~~~i~~d~~~~rG~aFV~F~~~~ 229 (364)
..|.. .+|.. +.+...+.. ....|.+.=|. ..+|-+-|..+....|.|..|.|++..+ -.|.|+|++.+
T Consensus 94 i~gq~Al~NyStsq~i~R~g~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkkng---VQAmVEFdsv~ 170 (494)
T KOG1456|consen 94 IAGQQALFNYSTSQCIERPGDESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKKNG---VQAMVEFDSVE 170 (494)
T ss_pred ccCchhhcccchhhhhccCCCCCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEeccc---eeeEEeechhH
Confidence 12222 22211 111111222 22334444443 6788999999999999999999887643 37999999999
Q ss_pred HHHHHHH-ccccccC-C-eeEEEeeCCCCCC-------------------C----CC---C-------------------
Q 017897 230 GARAALS-LAGTMLG-F-YPVRVLPSKTAIA-------------------P----VN---P------------------- 261 (364)
Q Consensus 230 ~A~~al~-l~g~~l~-g-~~i~V~~a~~~~~-------------------~----~~---~------------------- 261 (364)
.|++|.. |||..|- | ++|+|+++++... + .+ +
T Consensus 171 ~AqrAk~alNGADIYsGCCTLKIeyAkP~rlnV~knd~DtwDyTlp~~~~~~~~g~~~~~r~~~p~~~~~~pss~~G~h~ 250 (494)
T KOG1456|consen 171 VAQRAKAALNGADIYSGCCTLKIEYAKPTRLNVQKNDKDTWDYTLPDLRGPYDPGRNHYDRQRQPAPLGYHPSSRGGGHS 250 (494)
T ss_pred HHHHHHhhcccccccccceeEEEEecCcceeeeeecCCccccccCCCCCCCCCCCCCCCccccCCCccCCChhhcCCCCC
Confidence 9999998 9999864 5 5899999875100 0 00 0
Q ss_pred ----------C------CCCCCcc-------ccccCceEEEEeCCCCC-CCHHHHHHHhhhcCCceeEEEEeccCCCCee
Q 017897 262 ----------T------FLPRSED-------EREMCSRTIYCTNIDKK-VTQGDIKLFFESVCGEVQRLRLLGDYQHSTR 317 (364)
Q Consensus 262 ----------~------~~~~~~~-------~~~~~~~~l~V~nLp~~-~tee~L~~~F~~~~G~I~~v~i~~d~~~~kg 317 (364)
. +.+...+ ....+...+.|.+|+.. .+-+.|..+|..| |.|.+|+.++.+ .|
T Consensus 251 ~y~sg~~~~p~~~~P~r~~~~~~~~~g~a~p~g~~~g~VmMVyGLdh~k~N~drlFNl~ClY-GNV~rvkFmkTk---~g 326 (494)
T KOG1456|consen 251 GYYSGDRHGPPHPPPSRYRDGYRDGRGYASPGGGAPGCVMMVYGLDHGKMNCDRLFNLFCLY-GNVERVKFMKTK---PG 326 (494)
T ss_pred CCcccccCCCCCCCCCCCccccccCCCCCCCCCCCCCcEEEEEeccccccchhhhhhhhhhc-CceeeEEEeecc---cc
Confidence 0 0000000 11335678999999875 6778999999997 999999999864 35
Q ss_pred EEEEEecCHHHHHHHHh-cCCCeeCCeeeEEeecCCCC
Q 017897 318 IAFVEFAMAESAIAALN-CSGAVLGSLPIRVSPSKTPV 354 (364)
Q Consensus 318 ~afV~F~~~e~A~~Al~-lng~~~~g~~l~V~~ak~~~ 354 (364)
-|+|++.+..+.+.|+. ||+..+.|.+|.|..++...
T Consensus 327 tamVemgd~~aver~v~hLnn~~lfG~kl~v~~SkQ~~ 364 (494)
T KOG1456|consen 327 TAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCVSKQNF 364 (494)
T ss_pred eeEEEcCcHHHHHHHHHHhccCccccceEEEeeccccc
Confidence 89999999999999999 99999999999999987653
No 71
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.42 E-value=3.7e-13 Score=112.82 Aligned_cols=75 Identities=29% Similarity=0.424 Sum_probs=70.0
Q ss_pred CCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-ccccccCCeeEEEeeCCC
Q 017897 177 IRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSKT 254 (364)
Q Consensus 177 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~~~~rG~aFV~F~~~~~A~~al~-l~g~~l~g~~i~V~~a~~ 254 (364)
..++||||||+..+++.+|+..|..||.|.+|.|...+. |||||+|++..+|+.|+. |+|..|.|..|.|+.+..
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnPP---GfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G 84 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNPP---GFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTG 84 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecCC---CceEEeccCcccHHHHHhhcCCccccCceEEEEeecC
Confidence 368999999999999999999999999999999988654 899999999999999998 999999999999999754
No 72
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.42 E-value=1.2e-12 Score=96.21 Aligned_cols=68 Identities=32% Similarity=0.568 Sum_probs=62.0
Q ss_pred EEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccC-CCCeeEEEEEecCHHHHHHHHh-cCCCeeCCeeeE
Q 017897 278 IYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY-QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIR 346 (364)
Q Consensus 278 l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~-~~~kg~afV~F~~~e~A~~Al~-lng~~~~g~~l~ 346 (364)
|||+|||+.+++++|+++|+.+ |.|..+.+.+++ +.++++|||+|.+.++|..|+. +++..++|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~-g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRF-GPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTS-SBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhc-CCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 7999999999999999999997 999999999875 6789999999999999999999 888999999985
No 73
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.41 E-value=3.3e-11 Score=111.80 Aligned_cols=171 Identities=18% Similarity=0.164 Sum_probs=133.1
Q ss_pred cEEEEeCCCCC-CcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-ccccccCCeeEEEeeCCCCC
Q 017897 179 RTVYVSDIDQQ-VTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSKTAI 256 (364)
Q Consensus 179 ~~lfV~nLp~~-~te~~L~~~F~~~G~i~~~~i~~d~~~~rG~aFV~F~~~~~A~~al~-l~g~~l~g~~i~V~~a~~~~ 256 (364)
+.++|-+|... +.-+.|..+|..||.|+.|++++.+. |-|.|++.+..++++|+. ||+..+-|.+|.|..++...
T Consensus 288 ~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk~---gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~SkQ~~ 364 (494)
T KOG1456|consen 288 CVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTKP---GTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCVSKQNF 364 (494)
T ss_pred cEEEEEeccccccchhhhhhhhhhcCceeeEEEeeccc---ceeEEEcCcHHHHHHHHHHhccCccccceEEEeeccccc
Confidence 46899999854 55688999999999999999998775 799999999999999998 99999999999999987532
Q ss_pred -CCCCC--------CC-----------CCCCcc---ccccCceEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccCC
Q 017897 257 -APVNP--------TF-----------LPRSED---EREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQ 313 (364)
Q Consensus 257 -~~~~~--------~~-----------~~~~~~---~~~~~~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~~ 313 (364)
.+..+ .| ...... ....+.++|..-|.|..+||+.|..+|...--...+|+|...+.
T Consensus 365 v~~~~pflLpDgSpSfKdys~SkNnRFssp~qAsKNrIq~Ps~vLHffNaP~~vtEe~l~~i~nek~v~~~svkvFp~ks 444 (494)
T KOG1456|consen 365 VSPVQPFLLPDGSPSFKDYSGSKNNRFSSPEQASKNRIQPPSNVLHFFNAPLGVTEEQLIGICNEKDVPPTSVKVFPLKS 444 (494)
T ss_pred cccCCceecCCCCcchhhcccccccccCChhHhhcccccCCcceeEEecCCCccCHHHHHHHhhhcCCCcceEEeecccc
Confidence 22211 11 000000 01457789999999999999999999997612356778877664
Q ss_pred CCeeEEEEEecCHHHHHHHHh-cCCCeeCCe------eeEEeecCC
Q 017897 314 HSTRIAFVEFAMAESAIAALN-CSGAVLGSL------PIRVSPSKT 352 (364)
Q Consensus 314 ~~kg~afV~F~~~e~A~~Al~-lng~~~~g~------~l~V~~ak~ 352 (364)
.....+.++|++.++|..||. +|...+.+. .|++.|+.+
T Consensus 445 erSssGllEfe~~s~Aveal~~~NH~pi~~p~gs~PfilKlcfsts 490 (494)
T KOG1456|consen 445 ERSSSGLLEFENKSDAVEALMKLNHYPIEGPNGSFPFILKLCFSTS 490 (494)
T ss_pred cccccceeeeehHHHHHHHHHHhccccccCCCCCCCeeeeeeeccc
Confidence 344478999999999999999 999988654 466666654
No 74
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.41 E-value=9.2e-13 Score=115.94 Aligned_cols=79 Identities=28% Similarity=0.371 Sum_probs=74.2
Q ss_pred CCCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEeCCHHHHHHHHH-ccccccCCeeEEEeeC
Q 017897 176 VIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS--VLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPS 252 (364)
Q Consensus 176 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~~~--~rG~aFV~F~~~~~A~~al~-l~g~~l~g~~i~V~~a 252 (364)
.+..+|-|.||+.++++++|+++|.+||.|..+.|.+|+.+ +||||||+|.+.++|.+||. |||+-+..--|+|+|+
T Consensus 187 ~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEws 266 (270)
T KOG0122|consen 187 DDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWS 266 (270)
T ss_pred CccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEec
Confidence 35678999999999999999999999999999999999965 69999999999999999998 9999999999999998
Q ss_pred CC
Q 017897 253 KT 254 (364)
Q Consensus 253 ~~ 254 (364)
++
T Consensus 267 kP 268 (270)
T KOG0122|consen 267 KP 268 (270)
T ss_pred CC
Confidence 64
No 75
>smart00362 RRM_2 RNA recognition motif.
Probab=99.39 E-value=2.3e-12 Score=93.65 Aligned_cols=71 Identities=42% Similarity=0.617 Sum_probs=66.2
Q ss_pred EEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-ccccccCCeeEEEe
Q 017897 180 TVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVL 250 (364)
Q Consensus 180 ~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~~~~rG~aFV~F~~~~~A~~al~-l~g~~l~g~~i~V~ 250 (364)
+|||+|||..+++++|+++|..||.|..+.+..+++.++|+|||+|.+.+.|..|++ +++..+.|++|.|.
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 489999999999999999999999999999998876678999999999999999998 99999999998873
No 76
>PLN03213 repressor of silencing 3; Provisional
Probab=99.38 E-value=1.3e-12 Score=124.77 Aligned_cols=76 Identities=17% Similarity=0.250 Sum_probs=70.0
Q ss_pred CCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCH--HHHHHHHH-ccccccCCeeEEEeeCC
Q 017897 177 IRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDE--EGARAALS-LAGTMLGFYPVRVLPSK 253 (364)
Q Consensus 177 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~~~~rG~aFV~F~~~--~~A~~al~-l~g~~l~g~~i~V~~a~ 253 (364)
...+||||||++++++++|+.+|..||.|.+|.|++..+ ||||||+|.+. .++.+||. |||..+.|+.|+|..++
T Consensus 9 ~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAK 86 (759)
T PLN03213 9 GGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAK 86 (759)
T ss_pred cceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeecc
Confidence 456899999999999999999999999999999996554 99999999987 78999998 99999999999999987
Q ss_pred C
Q 017897 254 T 254 (364)
Q Consensus 254 ~ 254 (364)
+
T Consensus 87 P 87 (759)
T PLN03213 87 E 87 (759)
T ss_pred H
Confidence 5
No 77
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.37 E-value=1.1e-12 Score=104.38 Aligned_cols=79 Identities=29% Similarity=0.407 Sum_probs=72.4
Q ss_pred ccCceEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccC--CCCeeEEEEEecCHHHHHHHHh-cCCCeeCCeeeEEe
Q 017897 272 EMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVS 348 (364)
Q Consensus 272 ~~~~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~--~~~kg~afV~F~~~e~A~~Al~-lng~~~~g~~l~V~ 348 (364)
....++|||+||.+.++||+|.++|++ +|+|..|.+-.|. ..+-|||||+|.+.++|..|+. ++|+.++.++|++.
T Consensus 33 ~r~S~tvyVgNlSfyttEEqiyELFs~-cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D 111 (153)
T KOG0121|consen 33 LRKSCTVYVGNLSFYTTEEQIYELFSK-CGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRID 111 (153)
T ss_pred HhhcceEEEeeeeeeecHHHHHHHHHh-ccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeee
Confidence 446789999999999999999999999 6999999887775 4688999999999999999999 99999999999999
Q ss_pred ecC
Q 017897 349 PSK 351 (364)
Q Consensus 349 ~ak 351 (364)
|.-
T Consensus 112 ~D~ 114 (153)
T KOG0121|consen 112 WDA 114 (153)
T ss_pred ccc
Confidence 963
No 78
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.37 E-value=4.9e-12 Score=112.71 Aligned_cols=78 Identities=22% Similarity=0.240 Sum_probs=71.3
Q ss_pred CceEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccCCCCeeEEEEEecCHHHHHHHHhcCCCeeCCeeeEEeecCCC
Q 017897 274 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALNCSGAVLGSLPIRVSPSKTP 353 (364)
Q Consensus 274 ~~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~e~A~~Al~lng~~~~g~~l~V~~ak~~ 353 (364)
.+.+|||+||++.+++++|+++|+.+ |.|.+|.|+++. ..+++|||+|.++++|..|+.|+|..|.+++|.|......
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~-G~I~~V~I~~D~-et~gfAfVtF~d~~aaetAllLnGa~l~d~~I~It~~~~y 81 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHC-GAIEHVEIIRSG-EYACTAYVTFKDAYALETAVLLSGATIVDQRVCITRWGQY 81 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhc-CCeEEEEEecCC-CcceEEEEEECCHHHHHHHHhcCCCeeCCceEEEEeCccc
Confidence 45899999999999999999999985 999999999984 4568999999999999999999999999999999986543
No 79
>smart00362 RRM_2 RNA recognition motif.
Probab=99.36 E-value=5.3e-12 Score=91.77 Aligned_cols=71 Identities=34% Similarity=0.575 Sum_probs=66.4
Q ss_pred EEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccCCCCeeEEEEEecCHHHHHHHHh-cCCCeeCCeeeEEe
Q 017897 277 TIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVS 348 (364)
Q Consensus 277 ~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~e~A~~Al~-lng~~~~g~~l~V~ 348 (364)
+|||+|||..+++++|+++|++| |.|..+.+..+.+.++|+|||+|.+.++|..|+. +++..+.|++|+|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~-g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKF-GPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhc-CCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 58999999999999999999997 9999999998777788999999999999999999 99999999999874
No 80
>PLN03213 repressor of silencing 3; Provisional
Probab=99.34 E-value=3.5e-12 Score=121.93 Aligned_cols=80 Identities=15% Similarity=0.268 Sum_probs=73.2
Q ss_pred ccCceEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccCCCCeeEEEEEecCH--HHHHHHHh-cCCCeeCCeeeEEe
Q 017897 272 EMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMA--ESAIAALN-CSGAVLGSLPIRVS 348 (364)
Q Consensus 272 ~~~~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~--e~A~~Al~-lng~~~~g~~l~V~ 348 (364)
.....+|||+||++.+++++|+.+|.+| |.|.+|.|++..| ||||||+|.+. .++.+||. |||..+.|+.|+|.
T Consensus 7 ~~~gMRIYVGNLSydVTEDDLravFSeF-GsVkdVEIpRETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVN 83 (759)
T PLN03213 7 GGGGVRLHVGGLGESVGRDDLLKIFSPM-GTVDAVEFVRTKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLE 83 (759)
T ss_pred CCcceEEEEeCCCCCCCHHHHHHHHHhc-CCeeEEEEecccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEe
Confidence 3456899999999999999999999997 9999999997766 99999999987 78999999 99999999999999
Q ss_pred ecCCCC
Q 017897 349 PSKTPV 354 (364)
Q Consensus 349 ~ak~~~ 354 (364)
.|++..
T Consensus 84 KAKP~Y 89 (759)
T PLN03213 84 KAKEHY 89 (759)
T ss_pred eccHHH
Confidence 998753
No 81
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.34 E-value=3.8e-12 Score=111.67 Aligned_cols=78 Identities=18% Similarity=0.275 Sum_probs=71.5
Q ss_pred CceEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccC--CCCeeEEEEEecCHHHHHHHHhcCCCeeCCeeeEEeecC
Q 017897 274 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALNCSGAVLGSLPIRVSPSK 351 (364)
Q Consensus 274 ~~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~--~~~kg~afV~F~~~e~A~~Al~lng~~~~g~~l~V~~ak 351 (364)
..+.|||++|+..+..++|+++|++| |+|+.+.|+.|+ +++||||||+|.+.++|.+|+.--.-.|+||+..|.++-
T Consensus 11 ~~TKifVggL~w~T~~~~l~~yFeqf-GeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~piIdGR~aNcnlA~ 89 (247)
T KOG0149|consen 11 TFTKIFVGGLAWETHKETLRRYFEQF-GEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPNPIIDGRKANCNLAS 89 (247)
T ss_pred eEEEEEEcCcccccchHHHHHHHHHh-CceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCCCcccccccccchhh
Confidence 45799999999999999999999997 999999999997 799999999999999999999955678999999988876
Q ss_pred C
Q 017897 352 T 352 (364)
Q Consensus 352 ~ 352 (364)
-
T Consensus 90 l 90 (247)
T KOG0149|consen 90 L 90 (247)
T ss_pred h
Confidence 5
No 82
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=1e-12 Score=113.82 Aligned_cols=87 Identities=28% Similarity=0.391 Sum_probs=79.4
Q ss_pred CceEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccC--CCCeeEEEEEecCHHHHHHHHh-cCCCeeCCeeeEEeec
Q 017897 274 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSPS 350 (364)
Q Consensus 274 ~~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~--~~~kg~afV~F~~~e~A~~Al~-lng~~~~g~~l~V~~a 350 (364)
..++|||++|...++|.-|...|-+| |.|..|.++.|. ++.||||||+|...|+|.+||. ||+.+|.||.|+|.++
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPF-GDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~A 87 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPF-GDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLA 87 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccc-cchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeec
Confidence 45899999999999999999999997 999999999986 7899999999999999999999 9999999999999999
Q ss_pred CCCCCCCCCCC
Q 017897 351 KTPVRPRAPRP 361 (364)
Q Consensus 351 k~~~~~~~~r~ 361 (364)
+|...+..+..
T Consensus 88 kP~kikegsqk 98 (298)
T KOG0111|consen 88 KPEKIKEGSQK 98 (298)
T ss_pred CCccccCCCCC
Confidence 99765554433
No 83
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.31 E-value=1.9e-11 Score=103.44 Aligned_cols=138 Identities=14% Similarity=0.114 Sum_probs=106.7
Q ss_pred hcccCCccccccHHHHHHHHhccCCcceEEecCCCCCCcccccCCCCCCCCCeEEeeecccCCCCCccccccchhhhhhc
Q 017897 76 ERKMGESFKDCEMRDLVDMLSKLNPMAAEFVPPSLANGQIFNFNPAFFGPNGFGYTNNFIMHTDGTANTNGHTTTRRKRN 155 (364)
Q Consensus 76 ~~~~g~~~~~~~~~~L~~~Fs~~G~i~~v~v~~d~~t~~s~~~~~~~~~~~GfaFV~f~~~~~~~~~~~~a~~~~a~~~~ 155 (364)
..++|.|+-+.-++++.++|.|||.|..|.|..-+. . . +||||.|.+ +. ||+. |+...
T Consensus 8 ~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g---~-p---------pfafVeFEd-~R------DAeD--AiygR 65 (241)
T KOG0105|consen 8 RIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPG---P-P---------PFAFVEFED-PR------DAED--AIYGR 65 (241)
T ss_pred eEEecCCCcchhhccHHHHHhhhcceEEEEeccCCC---C-C---------CeeEEEecC-cc------chhh--hhhcc
Confidence 456799999999999999999999999998754321 1 2 899999999 77 6777 77655
Q ss_pred CCC--CCccccccCCcccc----------------------------cCCCCCcEEEEeCCCCCCcHHHHHHHhhcCCCe
Q 017897 156 GYS--QGKRRMNCRTSNAQ----------------------------QDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQV 205 (364)
Q Consensus 156 ~~~--~g~~~~~~~~~~~~----------------------------~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i 205 (364)
+.. .|-+ .++..+. ........|.|.+||++-++++|++++.+.|.|
T Consensus 66 dGYdydg~r---LRVEfprggr~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdv 142 (241)
T KOG0105|consen 66 DGYDYDGCR---LRVEFPRGGRSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDV 142 (241)
T ss_pred cccccCcce---EEEEeccCCCcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCe
Confidence 544 3333 2211111 011123469999999999999999999999999
Q ss_pred eEEEEecCCCCCceEEEEEeCCHHHHHHHHH-ccccccC
Q 017897 206 VDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLG 243 (364)
Q Consensus 206 ~~~~i~~d~~~~rG~aFV~F~~~~~A~~al~-l~g~~l~ 243 (364)
.-..+.+| |++.|+|...++.+-|+. |..+.+.
T Consensus 143 Cfadv~rD-----g~GvV~~~r~eDMkYAvr~ld~~~~~ 176 (241)
T KOG0105|consen 143 CFADVQRD-----GVGVVEYLRKEDMKYAVRKLDDQKFR 176 (241)
T ss_pred eeeeeecc-----cceeeeeeehhhHHHHHHhhcccccc
Confidence 99999888 699999999999999997 7776653
No 84
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.31 E-value=4.1e-11 Score=115.77 Aligned_cols=154 Identities=21% Similarity=0.300 Sum_probs=111.7
Q ss_pred CCCCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCCC-----CCce---EEEEEeCCHHHHHHHHH-c-cc---cc
Q 017897 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN-----SVLR---FAFVEFTDEEGARAALS-L-AG---TM 241 (364)
Q Consensus 175 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~~-----~~rG---~aFV~F~~~~~A~~al~-l-~g---~~ 241 (364)
....++||||+||++++|+.|...|..||.+. +..+...+ -++| |+|+.|+++..+...|. . .+ ..
T Consensus 256 ~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~~~~~~y 334 (520)
T KOG0129|consen 256 PRYSRKVFVGGLPWDITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSEGEGNYY 334 (520)
T ss_pred cccccceeecCCCccccHHHHHhhcccccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhhcccceE
Confidence 44567899999999999999999999999874 34443222 1366 99999999999988775 2 11 00
Q ss_pred -------cCCeeEEEeeCCCCCCCCCCCCCCCCccccccCceEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccC--
Q 017897 242 -------LGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY-- 312 (364)
Q Consensus 242 -------l~g~~i~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~-- 312 (364)
+..+.+.|.+..... ..|. ......-.+.+||||++||..++-++|-.+|+..||.|..+-|-.|+
T Consensus 335 f~vss~~~k~k~VQIrPW~laD----s~fv-~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~ 409 (520)
T KOG0129|consen 335 FKVSSPTIKDKEVQIRPWVLAD----SDFV-LDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKL 409 (520)
T ss_pred EEEecCcccccceeEEeeEecc----chhh-hccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCccc
Confidence 112223333221100 0010 00112234669999999999999999999999878999999999884
Q ss_pred CCCeeEEEEEecCHHHHHHHHh
Q 017897 313 QHSTRIAFVEFAMAESAIAALN 334 (364)
Q Consensus 313 ~~~kg~afV~F~~~e~A~~Al~ 334 (364)
+-++|-|-|+|.+..+-.+||.
T Consensus 410 KYPkGaGRVtFsnqqsYi~AIs 431 (520)
T KOG0129|consen 410 KYPKGAGRVTFSNQQAYIKAIS 431 (520)
T ss_pred CCCCCcceeeecccHHHHHHHh
Confidence 5799999999999999999997
No 85
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.30 E-value=1.8e-11 Score=94.07 Aligned_cols=78 Identities=24% Similarity=0.322 Sum_probs=71.5
Q ss_pred CCCCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-ccccccCCeeEEEeeCC
Q 017897 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSK 253 (364)
Q Consensus 175 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~~~~rG~aFV~F~~~~~A~~al~-l~g~~l~g~~i~V~~a~ 253 (364)
+...+-|||.|||..+|.+++.++|.+||.|..++|-..+++ +|-|||.|++..+|.+|+. |+|..+.++.|.|.+..
T Consensus 15 pevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~T-rGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq 93 (124)
T KOG0114|consen 15 PEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKET-RGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQ 93 (124)
T ss_pred hhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccCc-CceEEEEehHhhhHHHHHHHhcccccCCceEEEEecC
Confidence 445788999999999999999999999999999999877654 6999999999999999998 99999999999999864
No 86
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.27 E-value=2e-11 Score=93.80 Aligned_cols=78 Identities=21% Similarity=0.252 Sum_probs=70.6
Q ss_pred cCceEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccCCCCeeEEEEEecCHHHHHHHHh-cCCCeeCCeeeEEeecC
Q 017897 273 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSPSK 351 (364)
Q Consensus 273 ~~~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~e~A~~Al~-lng~~~~g~~l~V~~ak 351 (364)
...+.|||+|||+.+|.++..++|.+| |.|..|+|-..++ .+|-|||.|++..+|.+|+. |+|..+.++.|.|-+-.
T Consensus 16 evnriLyirNLp~~ITseemydlFGky-g~IrQIRiG~~k~-TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq 93 (124)
T KOG0114|consen 16 EVNRILYIRNLPFKITSEEMYDLFGKY-GTIRQIRIGNTKE-TRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQ 93 (124)
T ss_pred hhheeEEEecCCccccHHHHHHHhhcc-cceEEEEecCccC-cCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecC
Confidence 346899999999999999999999997 9999999966553 67899999999999999999 99999999999998865
Q ss_pred C
Q 017897 352 T 352 (364)
Q Consensus 352 ~ 352 (364)
+
T Consensus 94 ~ 94 (124)
T KOG0114|consen 94 P 94 (124)
T ss_pred H
Confidence 4
No 87
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.26 E-value=8.9e-13 Score=111.09 Aligned_cols=77 Identities=22% Similarity=0.347 Sum_probs=72.1
Q ss_pred CCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEeCCHHHHHHHHH-ccccccCCeeEEEeeCC
Q 017897 177 IRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSK 253 (364)
Q Consensus 177 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~~--~~rG~aFV~F~~~~~A~~al~-l~g~~l~g~~i~V~~a~ 253 (364)
+..-|||||||.+.||.+|.-.|++||+|++|.+++|+. +|+||||..|++..+...|+. |||..|.||.|+|....
T Consensus 34 dsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv~ 113 (219)
T KOG0126|consen 34 DSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHVS 113 (219)
T ss_pred cceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeecc
Confidence 467799999999999999999999999999999999985 479999999999999999998 99999999999998753
No 88
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.26 E-value=1e-12 Score=110.78 Aligned_cols=78 Identities=28% Similarity=0.388 Sum_probs=73.2
Q ss_pred CceEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccC--CCCeeEEEEEecCHHHHHHHHh-cCCCeeCCeeeEEeec
Q 017897 274 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSPS 350 (364)
Q Consensus 274 ~~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~--~~~kg~afV~F~~~e~A~~Al~-lng~~~~g~~l~V~~a 350 (364)
...-|||+|||+.+||.||..+|++| |+|+.|.+++|+ |+++||||++|++.-+.+-|+. |||..|.||.|+|...
T Consensus 34 dsA~Iyiggl~~~LtEgDil~VFSqy-Ge~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv 112 (219)
T KOG0126|consen 34 DSAYIYIGGLPYELTEGDILCVFSQY-GEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHV 112 (219)
T ss_pred cceEEEECCCcccccCCcEEEEeecc-CceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeec
Confidence 45799999999999999999999997 999999999997 7999999999999999999999 9999999999999885
Q ss_pred CC
Q 017897 351 KT 352 (364)
Q Consensus 351 k~ 352 (364)
-.
T Consensus 113 ~~ 114 (219)
T KOG0126|consen 113 SN 114 (219)
T ss_pred cc
Confidence 43
No 89
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.25 E-value=5.6e-12 Score=109.26 Aligned_cols=80 Identities=33% Similarity=0.423 Sum_probs=74.8
Q ss_pred CCCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEeCCHHHHHHHHH-ccccccCCeeEEEeeC
Q 017897 176 VIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPS 252 (364)
Q Consensus 176 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~~--~~rG~aFV~F~~~~~A~~al~-l~g~~l~g~~i~V~~a 252 (364)
...++||||+|..++++.-|...|-.||.|.+++++.|-. ++||||||+|...|+|.+||. ||+..|-||.|+|.++
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~A 87 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLA 87 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeec
Confidence 3568999999999999999999999999999999999874 579999999999999999998 9999999999999998
Q ss_pred CCC
Q 017897 253 KTA 255 (364)
Q Consensus 253 ~~~ 255 (364)
++.
T Consensus 88 kP~ 90 (298)
T KOG0111|consen 88 KPE 90 (298)
T ss_pred CCc
Confidence 763
No 90
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.25 E-value=5e-11 Score=87.04 Aligned_cols=72 Identities=46% Similarity=0.639 Sum_probs=66.3
Q ss_pred EEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCCC-CCceEEEEEeCCHHHHHHHHH-ccccccCCeeEEEee
Q 017897 180 TVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN-SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLP 251 (364)
Q Consensus 180 ~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~~-~~rG~aFV~F~~~~~A~~al~-l~g~~l~g~~i~V~~ 251 (364)
+|+|+|||+.+++++|+++|+.||.|..+.+..++. .++|+|||+|.+.++|..|++ +++..+.|+.+.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 489999999999999999999999999999998764 458999999999999999998 999999999998864
No 91
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.25 E-value=2e-11 Score=110.37 Aligned_cols=77 Identities=21% Similarity=0.337 Sum_probs=71.8
Q ss_pred CCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCC--CCCceEEEEEeCCHHHHHHHHH-ccccccCCeeEEEeeCC
Q 017897 177 IRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP--NSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSK 253 (364)
Q Consensus 177 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~--~~~rG~aFV~F~~~~~A~~al~-l~g~~l~g~~i~V~~a~ 253 (364)
.-+||||+-|+.+++|..|+..|+.||.|..++|+.|+ ++++|||||+|+++.+...|.+ .+|..|.|+.|.|..-.
T Consensus 100 Py~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDvER 179 (335)
T KOG0113|consen 100 PYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDVER 179 (335)
T ss_pred ccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEecc
Confidence 34799999999999999999999999999999999997 5689999999999999999998 99999999999998743
No 92
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.25 E-value=1.9e-11 Score=102.64 Aligned_cols=78 Identities=23% Similarity=0.331 Sum_probs=71.3
Q ss_pred CceEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccCCCCeeEEEEEecCHHHHHHHHh-cCCCeeCCeeeEEeecCC
Q 017897 274 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSPSKT 352 (364)
Q Consensus 274 ~~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~e~A~~Al~-lng~~~~g~~l~V~~ak~ 352 (364)
..+.|||+||+..+++.||...|..| |.|.+|.|-+.+ -|||||+|+++-+|..|+. |+|..|.|..|+|+.+.-
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~y-G~lrsvWvArnP---PGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G 84 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKY-GPLRSVWVARNP---PGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTG 84 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhc-CcceeEEEeecC---CCceEEeccCcccHHHHHhhcCCccccCceEEEEeecC
Confidence 35899999999999999999999997 999999998863 4699999999999999999 999999999999999876
Q ss_pred CCC
Q 017897 353 PVR 355 (364)
Q Consensus 353 ~~~ 355 (364)
..+
T Consensus 85 ~~r 87 (195)
T KOG0107|consen 85 RPR 87 (195)
T ss_pred Ccc
Confidence 554
No 93
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.25 E-value=1e-11 Score=106.74 Aligned_cols=79 Identities=27% Similarity=0.356 Sum_probs=73.2
Q ss_pred CCCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEeCCHHHHHHHHH-ccccccCCeeEEEeeC
Q 017897 176 VIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS--VLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPS 252 (364)
Q Consensus 176 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~~~--~rG~aFV~F~~~~~A~~al~-l~g~~l~g~~i~V~~a 252 (364)
..-.+|-|-||..-++.++|+.+|++||.|.+|.|+.|+.+ ++|||||.|.+..+|+.|++ |+|..|.|+.|.|..+
T Consensus 11 ~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~a 90 (256)
T KOG4207|consen 11 EGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMA 90 (256)
T ss_pred ccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhh
Confidence 34567999999999999999999999999999999999854 79999999999999999998 9999999999999887
Q ss_pred CC
Q 017897 253 KT 254 (364)
Q Consensus 253 ~~ 254 (364)
+-
T Consensus 91 ry 92 (256)
T KOG4207|consen 91 RY 92 (256)
T ss_pred hc
Confidence 54
No 94
>smart00360 RRM RNA recognition motif.
Probab=99.24 E-value=3.4e-11 Score=87.06 Aligned_cols=68 Identities=40% Similarity=0.587 Sum_probs=62.3
Q ss_pred EeCCCCCCcHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEeCCHHHHHHHHH-ccccccCCeeEEEe
Q 017897 183 VSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVL 250 (364)
Q Consensus 183 V~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~~--~~rG~aFV~F~~~~~A~~al~-l~g~~l~g~~i~V~ 250 (364)
|+|||..+++++|+++|+.||.|..+.+..++. .++|+|||+|.+.++|..|++ +++..+.|+.|.|.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 579999999999999999999999999998763 468999999999999999998 99999999998873
No 95
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.23 E-value=1.9e-11 Score=98.22 Aligned_cols=80 Identities=25% Similarity=0.285 Sum_probs=74.0
Q ss_pred ccCceEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccC--CCCeeEEEEEecCHHHHHHHHh-cCCCeeCCeeeEEe
Q 017897 272 EMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVS 348 (364)
Q Consensus 272 ~~~~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~--~~~kg~afV~F~~~e~A~~Al~-lng~~~~g~~l~V~ 348 (364)
...+..|||.++.+..+|++|.+.|..| |+|..+.+-.|. |-.+|||+|+|++.+.|++|+. +||..|.|..|.|.
T Consensus 69 SVEGwIi~VtgvHeEatEedi~d~F~dy-GeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VD 147 (170)
T KOG0130|consen 69 SVEGWIIFVTGVHEEATEEDIHDKFADY-GEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVD 147 (170)
T ss_pred ceeeEEEEEeccCcchhHHHHHHHHhhc-ccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEE
Confidence 4567899999999999999999999997 999999988775 7789999999999999999999 99999999999999
Q ss_pred ecCC
Q 017897 349 PSKT 352 (364)
Q Consensus 349 ~ak~ 352 (364)
|+=-
T Consensus 148 w~Fv 151 (170)
T KOG0130|consen 148 WCFV 151 (170)
T ss_pred EEEe
Confidence 9743
No 96
>smart00360 RRM RNA recognition motif.
Probab=99.23 E-value=4.8e-11 Score=86.24 Aligned_cols=68 Identities=32% Similarity=0.539 Sum_probs=62.8
Q ss_pred EeCCCCCCCHHHHHHHhhhcCCceeEEEEeccC--CCCeeEEEEEecCHHHHHHHHh-cCCCeeCCeeeEEe
Q 017897 280 CTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVS 348 (364)
Q Consensus 280 V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~--~~~kg~afV~F~~~e~A~~Al~-lng~~~~g~~l~V~ 348 (364)
|+|||..+++++|+++|++| |.|..+.+..++ +.++|+|||+|.++++|..|+. +++..++|+.|+|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~-g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKF-GKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhh-CCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 57999999999999999997 999999998874 5788999999999999999999 99999999999874
No 97
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.22 E-value=1.1e-10 Score=85.28 Aligned_cols=72 Identities=36% Similarity=0.582 Sum_probs=66.7
Q ss_pred EEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccC-CCCeeEEEEEecCHHHHHHHHh-cCCCeeCCeeeEEee
Q 017897 277 TIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY-QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSP 349 (364)
Q Consensus 277 ~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~-~~~kg~afV~F~~~e~A~~Al~-lng~~~~g~~l~V~~ 349 (364)
+|+|+|||..+++++|+++|+.+ |.|..+.+..+. +..+|+|||+|.+.++|..|+. +++..+.|+.|.|.|
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~-g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKF-GKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhc-CCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 48999999999999999999997 999999999875 4568899999999999999999 999999999999875
No 98
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.21 E-value=6.9e-11 Score=83.02 Aligned_cols=55 Identities=31% Similarity=0.541 Sum_probs=50.2
Q ss_pred HHHHhhhcCCceeEEEEeccCCCCeeEEEEEecCHHHHHHHHh-cCCCeeCCeeeEEeec
Q 017897 292 IKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSPS 350 (364)
Q Consensus 292 L~~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~e~A~~Al~-lng~~~~g~~l~V~~a 350 (364)
|+++|++| |.|.++.+.++. +++|||+|.+.++|.+|+. |||..++|++|+|.|+
T Consensus 1 L~~~f~~f-G~V~~i~~~~~~---~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKF-GEVKKIKIFKKK---RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTT-S-EEEEEEETTS---TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCc-ccEEEEEEEeCC---CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68999997 999999998875 4699999999999999999 9999999999999986
No 99
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.20 E-value=3.4e-11 Score=103.61 Aligned_cols=79 Identities=27% Similarity=0.376 Sum_probs=73.9
Q ss_pred CceEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccC--CCCeeEEEEEecCHHHHHHHHh-cCCCeeCCeeeEEeec
Q 017897 274 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSPS 350 (364)
Q Consensus 274 ~~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~--~~~kg~afV~F~~~e~A~~Al~-lng~~~~g~~l~V~~a 350 (364)
...+|.|.||-+.++-++|+.+|++| |.|-+|.|++|. ..++|||||.|....+|+.|+. |+|..|+|+.|+|+.+
T Consensus 12 gm~SLkVdNLTyRTspd~LrrvFekY-G~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~a 90 (256)
T KOG4207|consen 12 GMTSLKVDNLTYRTSPDDLRRVFEKY-GRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMA 90 (256)
T ss_pred cceeEEecceeccCCHHHHHHHHHHh-CcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhh
Confidence 45799999999999999999999997 999999999997 5799999999999999999999 9999999999999988
Q ss_pred CCC
Q 017897 351 KTP 353 (364)
Q Consensus 351 k~~ 353 (364)
+--
T Consensus 91 ryg 93 (256)
T KOG4207|consen 91 RYG 93 (256)
T ss_pred hcC
Confidence 653
No 100
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.19 E-value=9.6e-11 Score=106.00 Aligned_cols=80 Identities=21% Similarity=0.363 Sum_probs=74.8
Q ss_pred cCceEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccC--CCCeeEEEEEecCHHHHHHHHh-cCCCeeCCeeeEEee
Q 017897 273 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSP 349 (364)
Q Consensus 273 ~~~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~--~~~kg~afV~F~~~e~A~~Al~-lng~~~~g~~l~V~~ 349 (364)
.+-+||||.-|+..++|.+|+..|+.| |.|..|.|++|+ |+++|||||+|++.-+..+|.. .+|..|+|+.|.|.+
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~Y-G~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDv 177 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKY-GPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDV 177 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhc-CcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEe
Confidence 456899999999999999999999997 999999999996 8999999999999999999999 999999999999998
Q ss_pred cCCC
Q 017897 350 SKTP 353 (364)
Q Consensus 350 ak~~ 353 (364)
-.-.
T Consensus 178 ERgR 181 (335)
T KOG0113|consen 178 ERGR 181 (335)
T ss_pred cccc
Confidence 6544
No 101
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.18 E-value=3.5e-11 Score=106.24 Aligned_cols=143 Identities=22% Similarity=0.261 Sum_probs=109.1
Q ss_pred hcccCCccccccHHHHHHHHhccCCcceEEecCCCCCCcccccCCCCCCCCCeEEeeecccCCCCCccccccchhhhhhc
Q 017897 76 ERKMGESFKDCEMRDLVDMLSKLNPMAAEFVPPSLANGQIFNFNPAFFGPNGFGYTNNFIMHTDGTANTNGHTTTRRKRN 155 (364)
Q Consensus 76 ~~~~g~~~~~~~~~~L~~~Fs~~G~i~~v~v~~d~~t~~s~~~~~~~~~~~GfaFV~f~~~~~~~~~~~~a~~~~a~~~~ 155 (364)
..++|.|+|.+.+++|.++|.+||.|-.+.+.. ||+||.|.+ .. ||.. |+..+
T Consensus 3 rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~------------------gf~fv~fed-~r------da~D--av~~l 55 (216)
T KOG0106|consen 3 RVYIGRLPYRARERDVERFFKGYGKIPDADMKN------------------GFGFVEFED-PR------DADD--AVHDL 55 (216)
T ss_pred ceeecccCCccchhHHHHHHhhccccccceeec------------------ccceeccCc-hh------hhhc--ccchh
Confidence 567899999999999999999999999887533 999999988 66 4555 55555
Q ss_pred CCC--CCcc----------------ccccCCccc---ccCCCCCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCC
Q 017897 156 GYS--QGKR----------------RMNCRTSNA---QQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP 214 (364)
Q Consensus 156 ~~~--~g~~----------------~~~~~~~~~---~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~ 214 (364)
+.. .|.. .-.-+..+. .......+.++|.+++..+.+.+|.+.|..+|.+....+
T Consensus 56 ~~~~l~~e~~vve~~r~~~~~~g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~---- 131 (216)
T KOG0106|consen 56 DGKELCGERLVVEHARGKRRGRGRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA---- 131 (216)
T ss_pred cCceecceeeeeecccccccccCCCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhh----
Confidence 544 2221 100000011 112334567999999999999999999999999955544
Q ss_pred CCCceEEEEEeCCHHHHHHHHH-ccccccCCeeEEEee
Q 017897 215 NSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLP 251 (364)
Q Consensus 215 ~~~rG~aFV~F~~~~~A~~al~-l~g~~l~g~~i~V~~ 251 (364)
.++++||+|.+.++|..|+. +++..+.++.|.+..
T Consensus 132 --~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~~~ 167 (216)
T KOG0106|consen 132 --RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISVEK 167 (216)
T ss_pred --hccccceeehhhhhhhhcchhccchhhcCceeeecc
Confidence 24699999999999999998 999999999999943
No 102
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.17 E-value=4.5e-11 Score=96.13 Aligned_cols=76 Identities=25% Similarity=0.321 Sum_probs=71.6
Q ss_pred CcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEeCCHHHHHHHHH-ccccccCCeeEEEeeCC
Q 017897 178 RRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS--VLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSK 253 (364)
Q Consensus 178 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~~~--~rG~aFV~F~~~~~A~~al~-l~g~~l~g~~i~V~~a~ 253 (364)
...|||.++.++.|+++|.+.|..||+|..+.+-.|..+ .+|||.|+|++.++|++|+. +||..|-|.+|.|.|+-
T Consensus 72 GwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~F 150 (170)
T KOG0130|consen 72 GWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWCF 150 (170)
T ss_pred eEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEEE
Confidence 457999999999999999999999999999999999876 49999999999999999998 99999999999999974
No 103
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.17 E-value=6.2e-11 Score=115.66 Aligned_cols=76 Identities=34% Similarity=0.473 Sum_probs=72.3
Q ss_pred cEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEeCCHHHHHHHHH-ccccccCCeeEEEeeCCC
Q 017897 179 RTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSKT 254 (364)
Q Consensus 179 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~~--~~rG~aFV~F~~~~~A~~al~-l~g~~l~g~~i~V~~a~~ 254 (364)
+.|||||+|.++++++|.++|+..|.|.+++++.|+. +.+||||++|.+.+.|..|++ |||..+.|++|+|.|+..
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~ 97 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASN 97 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeecccc
Confidence 8899999999999999999999999999999999985 469999999999999999999 999999999999999753
No 104
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.17 E-value=1.7e-10 Score=105.85 Aligned_cols=77 Identities=35% Similarity=0.563 Sum_probs=73.4
Q ss_pred ceEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccC--CCCeeEEEEEecCHHHHHHHHh-cCCCeeCCeeeEEeecC
Q 017897 275 SRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSPSK 351 (364)
Q Consensus 275 ~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~--~~~kg~afV~F~~~e~A~~Al~-lng~~~~g~~l~V~~ak 351 (364)
..+|||+|||..+++++|+++|.+| |.|..+.+..+. +.++|||||+|.+.++|..|+. ++|..|.|++|.|.++.
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~-g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~ 193 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKF-GPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQ 193 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhc-CceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeeccc
Confidence 5899999999999999999999997 999999999985 7899999999999999999999 99999999999999976
Q ss_pred C
Q 017897 352 T 352 (364)
Q Consensus 352 ~ 352 (364)
.
T Consensus 194 ~ 194 (306)
T COG0724 194 P 194 (306)
T ss_pred c
Confidence 4
No 105
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.16 E-value=1.3e-10 Score=81.64 Aligned_cols=55 Identities=35% Similarity=0.480 Sum_probs=50.2
Q ss_pred HHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-ccccccCCeeEEEeeC
Q 017897 195 LATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPS 252 (364)
Q Consensus 195 L~~~F~~~G~i~~~~i~~d~~~~rG~aFV~F~~~~~A~~al~-l~g~~l~g~~i~V~~a 252 (364)
|+++|++||+|..+.+..+. +++|||+|.+.++|..|++ |||..+.|++|+|.|+
T Consensus 1 L~~~f~~fG~V~~i~~~~~~---~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK---RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS---TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC---CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68899999999999998776 4799999999999999998 9999999999999985
No 106
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.16 E-value=3e-10 Score=99.57 Aligned_cols=137 Identities=19% Similarity=0.202 Sum_probs=104.9
Q ss_pred HHHHHHHhccCCcceEEecCCCCCCcccccCCCCCCCCCeEEeeecccCCCCCccccccchhhhhhcCCC--CCcccccc
Q 017897 89 RDLVDMLSKLNPMAAEFVPPSLANGQIFNFNPAFFGPNGFGYTNNFIMHTDGTANTNGHTTTRRKRNGYS--QGKRRMNC 166 (364)
Q Consensus 89 ~~L~~~Fs~~G~i~~v~v~~d~~t~~s~~~~~~~~~~~GfaFV~f~~~~~~~~~~~~a~~~~a~~~~~~~--~g~~~~~~ 166 (364)
+.|+.+||+||.|.+|...+ |.+. | |=|||.|.+ .+ .|.. |++.+++. .||+ .
T Consensus 28 rsL~~LFsqfG~ildI~a~k---t~Km-R---------GQA~VvFk~-~~------~As~--A~r~l~gfpFygK~---m 82 (221)
T KOG4206|consen 28 RSLYLLFSQFGKILDISAFK---TPKM-R---------GQAFVVFKE-TE------AASA--ALRALQGFPFYGKP---M 82 (221)
T ss_pred HHHHHHHHhhCCeEEEEecC---CCCc-c---------CceEEEecC-hh------HHHH--HHHHhcCCcccCch---h
Confidence 34555999999999998765 3444 5 999999999 45 3555 77777665 6666 4
Q ss_pred CCcccccC----------------------------------------------------CCCCcEEEEeCCCCCCcHHH
Q 017897 167 RTSNAQQD----------------------------------------------------EVIRRTVYVSDIDQQVTEEQ 194 (364)
Q Consensus 167 ~~~~~~~~----------------------------------------------------~~~~~~lfV~nLp~~~te~~ 194 (364)
++.+++.+ ......+|+.|||.+++.+.
T Consensus 83 riqyA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e~ 162 (221)
T KOG4206|consen 83 RIQYAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESESEM 162 (221)
T ss_pred heecccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhHHH
Confidence 43332200 12235699999999999999
Q ss_pred HHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-ccccccC-CeeEEEeeCC
Q 017897 195 LATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLG-FYPVRVLPSK 253 (364)
Q Consensus 195 L~~~F~~~G~i~~~~i~~d~~~~rG~aFV~F~~~~~A~~al~-l~g~~l~-g~~i~V~~a~ 253 (364)
|..+|.+|....+++++.... +.|||+|.+...|..|.. +.+..+. ...+.|.+++
T Consensus 163 l~~lf~qf~g~keir~i~~~~---~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 163 LSDLFEQFPGFKEIRLIPPRS---GIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFAK 220 (221)
T ss_pred HHHHHhhCcccceeEeccCCC---ceeEEecchhhhhHHHhhhhccceeccCceEEecccC
Confidence 999999999999999987543 799999999999999997 8887776 7777877653
No 107
>smart00361 RRM_1 RNA recognition motif.
Probab=99.12 E-value=3.1e-10 Score=83.58 Aligned_cols=59 Identities=20% Similarity=0.355 Sum_probs=51.8
Q ss_pred HHHHHHHhh----hcCCceeEEE-EeccC----CCCeeEEEEEecCHHHHHHHHh-cCCCeeCCeeeEEe
Q 017897 289 QGDIKLFFE----SVCGEVQRLR-LLGDY----QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVS 348 (364)
Q Consensus 289 ee~L~~~F~----~~~G~I~~v~-i~~d~----~~~kg~afV~F~~~e~A~~Al~-lng~~~~g~~l~V~ 348 (364)
+++|+++|+ +| |.|.+|. ++.+. ++++|||||+|.+.++|.+|+. |||..+.|+.|+++
T Consensus 2 ~~~l~~~~~~~~~~f-G~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~~ 70 (70)
T smart00361 2 DEDFEREFSEEEEYF-GEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKAE 70 (70)
T ss_pred chhHHHHHHHHHHhc-CCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEeC
Confidence 678899998 86 9999995 55443 6789999999999999999999 99999999999874
No 108
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=99.11 E-value=1.5e-11 Score=124.58 Aligned_cols=216 Identities=16% Similarity=0.103 Sum_probs=160.0
Q ss_pred HHHHHHhccCCcceEEecCCCCCCcccccCCCCCCCCCeEEeeecccCCCCCccccccchhhhhhcCCCCCccccccCCc
Q 017897 90 DLVDMLSKLNPMAAEFVPPSLANGQIFNFNPAFFGPNGFGYTNNFIMHTDGTANTNGHTTTRRKRNGYSQGKRRMNCRTS 169 (364)
Q Consensus 90 ~L~~~Fs~~G~i~~v~v~~d~~t~~s~~~~~~~~~~~GfaFV~f~~~~~~~~~~~~a~~~~a~~~~~~~~g~~~~~~~~~ 169 (364)
.++..|..+|.|..|+++......++ . .++++.+.. +. .++. +...-....+.+...+-..
T Consensus 588 ~~~~~~k~~~~vekv~~p~~g~k~h~-q---------~~~~~~~s~-~~------~~es--at~pa~~~~a~~~~av~~a 648 (881)
T KOG0128|consen 588 IQRRQFKGEGNVEKVNGPKRGFKAHE-Q---------PQQQKVQSK-HG------SAES--ATVPAGGALANRSAAVGLA 648 (881)
T ss_pred hhHHHhhcccccccccCccccccccc-c---------chhhhhhcc-cc------chhh--cccccccccCCccccCCCC
Confidence 57889999999999998775444444 2 478888877 44 3444 3333222222221111111
Q ss_pred ccccCC----------CCCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEec--CCCCCceEEEEEeCCHHHHHHHHHc
Q 017897 170 NAQQDE----------VIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICG--DPNSVLRFAFVEFTDEEGARAALSL 237 (364)
Q Consensus 170 ~~~~~~----------~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~--d~~~~rG~aFV~F~~~~~A~~al~l 237 (364)
.+.... ....++||.||+..+.+++|...|..+|.+..+++.. +.+.-||+|||.|..++.+.+|+.+
T Consensus 649 d~~~~~~~~kvs~n~~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f 728 (881)
T KOG0128|consen 649 DAEEKEENFKVSPNEIRDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAF 728 (881)
T ss_pred CchhhhhccCcCchHHHHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhh
Confidence 111110 1224699999999999999999999999888877663 3345689999999999999999995
Q ss_pred cccccCCeeEEEeeCCCCCCCCCCCCCCCCccccccCceEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccC-CCCe
Q 017897 238 AGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY-QHST 316 (364)
Q Consensus 238 ~g~~l~g~~i~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~-~~~k 316 (364)
....+.| ...++|.|.|+..|.++|+.++..+ |.+.+++++... |+++
T Consensus 729 ~d~~~~g------------------------------K~~v~i~g~pf~gt~e~~k~l~~~~-gn~~~~~~vt~r~gkpk 777 (881)
T KOG0128|consen 729 RDSCFFG------------------------------KISVAISGPPFQGTKEELKSLASKT-GNVTSLRLVTVRAGKPK 777 (881)
T ss_pred hhhhhhh------------------------------hhhhheeCCCCCCchHHHHhhcccc-CCccccchhhhhccccc
Confidence 4444333 1478999999999999999999997 999999988765 8999
Q ss_pred eEEEEEecCHHHHHHHHh-cCCCeeCCeeeEEeecCCCCC
Q 017897 317 RIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSPSKTPVR 355 (364)
Q Consensus 317 g~afV~F~~~e~A~~Al~-lng~~~~g~~l~V~~ak~~~~ 355 (364)
|.|+|.|.+..+|.+++. .....+....+.|..+.+++.
T Consensus 778 g~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp~~~ 817 (881)
T KOG0128|consen 778 GKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNPERD 817 (881)
T ss_pred cceeccCCCcchhhhhcccchhhhhhhcCccccccCCccc
Confidence 999999999999999998 888888777777777666433
No 109
>smart00361 RRM_1 RNA recognition motif.
Probab=99.11 E-value=3.3e-10 Score=83.45 Aligned_cols=58 Identities=24% Similarity=0.291 Sum_probs=51.5
Q ss_pred HHHHHHHhh----cCCCeeEEE-EecCC----CCCceEEEEEeCCHHHHHHHHH-ccccccCCeeEEE
Q 017897 192 EEQLATLFL----TCGQVVDCR-ICGDP----NSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRV 249 (364)
Q Consensus 192 e~~L~~~F~----~~G~i~~~~-i~~d~----~~~rG~aFV~F~~~~~A~~al~-l~g~~l~g~~i~V 249 (364)
+++|+++|+ +||.|.++. ++.++ +.++|||||+|.+.++|.+|++ |||..+.|+.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 578899998 999999995 66665 4579999999999999999998 9999999999976
No 110
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.10 E-value=1.5e-10 Score=112.94 Aligned_cols=79 Identities=24% Similarity=0.357 Sum_probs=74.8
Q ss_pred eEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccC--CCCeeEEEEEecCHHHHHHHHh-cCCCeeCCeeeEEeecCC
Q 017897 276 RTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSPSKT 352 (364)
Q Consensus 276 ~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~--~~~kg~afV~F~~~e~A~~Al~-lng~~~~g~~l~V~~ak~ 352 (364)
+.+||+|+|+++++++|..+|+.. |.|.+++++.|. |+.+||||++|.+.++|..|++ |||.++.|++|+|.|+..
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~-g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~ 97 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGV-GPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASN 97 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhcc-CccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeecccc
Confidence 899999999999999999999997 999999999886 8999999999999999999999 999999999999999876
Q ss_pred CCC
Q 017897 353 PVR 355 (364)
Q Consensus 353 ~~~ 355 (364)
...
T Consensus 98 ~~~ 100 (435)
T KOG0108|consen 98 RKN 100 (435)
T ss_pred cch
Confidence 543
No 111
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.07 E-value=4.4e-10 Score=110.48 Aligned_cols=172 Identities=22% Similarity=0.319 Sum_probs=137.7
Q ss_pred CCcEEEEeCCCCCCcHHHHHHHhhcC-----------C-CeeEEEEecCCCCCceEEEEEeCCHHHHHHHHHccccccCC
Q 017897 177 IRRTVYVSDIDQQVTEEQLATLFLTC-----------G-QVVDCRICGDPNSVLRFAFVEFTDEEGARAALSLAGTMLGF 244 (364)
Q Consensus 177 ~~~~lfV~nLp~~~te~~L~~~F~~~-----------G-~i~~~~i~~d~~~~rG~aFV~F~~~~~A~~al~l~g~~l~g 244 (364)
..+.++|+++|+.++++.+-.+|..- | .+..+.+...+ .|||++|.+.++|..|+.+++..+.|
T Consensus 174 q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n~~~----nfa~ie~~s~~~at~~~~~~~~~f~g 249 (500)
T KOG0120|consen 174 QARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLNLEK----NFAFIEFRSISEATEAMALDGIIFEG 249 (500)
T ss_pred hhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeecccc----cceeEEecCCCchhhhhcccchhhCC
Confidence 34679999999999999999998743 3 37777776665 49999999999999999999999999
Q ss_pred eeEEEeeCCCCCCCCCCC--------CCCCCc-cccccCceEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccC--C
Q 017897 245 YPVRVLPSKTAIAPVNPT--------FLPRSE-DEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--Q 313 (364)
Q Consensus 245 ~~i~V~~a~~~~~~~~~~--------~~~~~~-~~~~~~~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~--~ 313 (364)
.++++...........-. +..... .........+||++||..+++++++++.+.| |.+....++.+. |
T Consensus 250 ~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~f-g~lk~f~lv~d~~~g 328 (500)
T KOG0120|consen 250 RPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSF-GPLKAFRLVKDSATG 328 (500)
T ss_pred CCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhc-ccchhheeecccccc
Confidence 999887543221111100 011111 1113456799999999999999999999997 999999999885 6
Q ss_pred CCeeEEEEEecCHHHHHHHHh-cCCCeeCCeeeEEeecCCC
Q 017897 314 HSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSPSKTP 353 (364)
Q Consensus 314 ~~kg~afV~F~~~e~A~~Al~-lng~~~~g~~l~V~~ak~~ 353 (364)
.++||||.+|.+......|+. |||..++++.|.|..+-.-
T Consensus 329 ~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~g 369 (500)
T KOG0120|consen 329 NSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIVG 369 (500)
T ss_pred cccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhcc
Confidence 899999999999999999999 9999999999999987554
No 112
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.97 E-value=1.2e-10 Score=101.08 Aligned_cols=131 Identities=25% Similarity=0.357 Sum_probs=112.3
Q ss_pred CCCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-ccccccCCeeEEEeeCCC
Q 017897 176 VIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSKT 254 (364)
Q Consensus 176 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~~~~rG~aFV~F~~~~~A~~al~-l~g~~l~g~~i~V~~a~~ 254 (364)
...++|||+|+...++++-|.++|-+.|+|..+.|..++....-||||.|.++-.+.-|++ +||..+.+.++.|.+
T Consensus 7 e~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~kFa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~--- 83 (267)
T KOG4454|consen 7 EMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQKFAYVFFPNENSVQLAGQLENGDDLEEDEEQRTL--- 83 (267)
T ss_pred chhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCceeeeecccccchhhhhhhcccchhccchhhccc---
Confidence 3468999999999999999999999999999999998876543499999999999999999 999999999988765
Q ss_pred CCCCCCCCCCCCCccccccCceEEEEeC----CCCCCCHHHHHHHhhhcCCceeEEEEeccC-CCCeeEEEEEecCHHHH
Q 017897 255 AIAPVNPTFLPRSEDEREMCSRTIYCTN----IDKKVTQGDIKLFFESVCGEVQRLRLLGDY-QHSTRIAFVEFAMAESA 329 (364)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~l~V~n----Lp~~~tee~L~~~F~~~~G~I~~v~i~~d~-~~~kg~afV~F~~~e~A 329 (364)
+.++ |+..++++.+...|+.. |.+..+++..+. ++.+.++|+.+....+.
T Consensus 84 ------------------------r~G~shapld~r~~~ei~~~v~s~a-~p~~~~R~~~~~d~rnrn~~~~~~qr~~~~ 138 (267)
T KOG4454|consen 84 ------------------------RCGNSHAPLDERVTEEILYEVFSQA-GPIEGVRIPTDNDGRNRNFGFVTYQRLCAV 138 (267)
T ss_pred ------------------------ccCCCcchhhhhcchhhheeeeccc-CCCCCccccccccCCccCccchhhhhhhcC
Confidence 2333 56678999999999997 999999998874 67888999999877666
Q ss_pred HHHHh
Q 017897 330 IAALN 334 (364)
Q Consensus 330 ~~Al~ 334 (364)
-.++.
T Consensus 139 P~~~~ 143 (267)
T KOG4454|consen 139 PFALD 143 (267)
T ss_pred cHHhh
Confidence 66665
No 113
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.93 E-value=1.8e-08 Score=97.80 Aligned_cols=165 Identities=19% Similarity=0.130 Sum_probs=108.8
Q ss_pred chhcccCCccccccHHHHHHHHhccCCcceEEecCCCCCCcccccCCCCCCCCCeEEeeecccCCCCCccccccchhhhh
Q 017897 74 HMERKMGESFKDCEMRDLVDMLSKLNPMAAEFVPPSLANGQIFNFNPAFFGPNGFGYTNNFIMHTDGTANTNGHTTTRRK 153 (364)
Q Consensus 74 ~~~~~~g~~~~~~~~~~L~~~Fs~~G~i~~v~v~~d~~t~~s~~~~~~~~~~~GfaFV~f~~~~~~~~~~~~a~~~~a~~ 153 (364)
.+++++|||+|+.+++.|...|..||.+. |.-+. +...+. +. | +-+..||.|+-|.+ +. .+.. .+.
T Consensus 259 S~KVFvGGlp~dise~~i~~~F~~FGs~~-VdWP~-k~~~~~-~~-p-pkGs~~YvflvFe~-E~------sV~~--Ll~ 324 (520)
T KOG0129|consen 259 SRKVFVGGLPWDITEAQINASFGQFGSVK-VDWPG-KANSRG-RA-P-PKGSYGYVFLVFED-ER------SVQS--LLS 324 (520)
T ss_pred ccceeecCCCccccHHHHHhhcccccceE-eecCC-Cccccc-cC-C-CCCcccEEEEEecc-hH------HHHH--HHH
Confidence 45778899999999999999999999876 33443 122221 10 0 11112499999998 44 1222 222
Q ss_pred hcCCCCCcc---------------ccccCCccc------ccCCCCCcEEEEeCCCCCCcHHHHHHHhh-cCCCeeEEEEe
Q 017897 154 RNGYSQGKR---------------RMNCRTSNA------QQDEVIRRTVYVSDIDQQVTEEQLATLFL-TCGQVVDCRIC 211 (364)
Q Consensus 154 ~~~~~~g~~---------------~~~~~~~~~------~~~~~~~~~lfV~nLp~~~te~~L~~~F~-~~G~i~~~~i~ 211 (364)
.-....++- .+.|++... ...-...+|||||+||.-++.++|..+|. -||.|+.+-|=
T Consensus 325 aC~~~~~~~yf~vss~~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGID 404 (520)
T KOG0129|consen 325 ACSEGEGNYYFKVSSPTIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGID 404 (520)
T ss_pred HHhhcccceEEEEecCcccccceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEec
Confidence 211111111 112332221 22334568999999999999999999999 89999999999
Q ss_pred cCCC-C-CceEEEEEeCCHHHHHHHHHccccccC----CeeEEEeeC
Q 017897 212 GDPN-S-VLRFAFVEFTDEEGARAALSLAGTMLG----FYPVRVLPS 252 (364)
Q Consensus 212 ~d~~-~-~rG~aFV~F~~~~~A~~al~l~g~~l~----g~~i~V~~a 252 (364)
.|+. + ++|-|=|+|.+..+-.+||...-..|. .++|.|++.
T Consensus 405 tD~k~KYPkGaGRVtFsnqqsYi~AIsarFvql~h~d~~KRVEIkPY 451 (520)
T KOG0129|consen 405 TDPKLKYPKGAGRVTFSNQQAYIKAISARFVQLDHTDIDKRVEIKPY 451 (520)
T ss_pred cCcccCCCCCcceeeecccHHHHHHHhhheEEEeccccceeeeecce
Confidence 9853 4 699999999999999999962222221 356777663
No 114
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.92 E-value=1.1e-09 Score=97.13 Aligned_cols=164 Identities=21% Similarity=0.318 Sum_probs=125.4
Q ss_pred cEEEEeCCCCCCcHHH-H--HHHhhcCCCeeEEEEecCC-CCCceEEEEEeCCHHHHHHHHH-ccccccCCeeEEEeeCC
Q 017897 179 RTVYVSDIDQQVTEEQ-L--ATLFLTCGQVVDCRICGDP-NSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSK 253 (364)
Q Consensus 179 ~~lfV~nLp~~~te~~-L--~~~F~~~G~i~~~~i~~d~-~~~rG~aFV~F~~~~~A~~al~-l~g~~l~g~~i~V~~a~ 253 (364)
..++++++-.++..+- | ...|+.|-.+...+++.+. +.-++++|+.|.....-.++-. -+++.++-.+|++.-..
T Consensus 97 f~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a~gt 176 (290)
T KOG0226|consen 97 FRPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDRPQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLAAGT 176 (290)
T ss_pred ccccccccccccCCCCCCcchhhhccchhhhhhhhhhcCCCccCcccccCcchhhhhhhhccccccccccCcceeecccc
Confidence 4466777666666554 3 6788888888888888876 4568999999988777776665 56666665665554332
Q ss_pred CCCCCCCCCCCCCCccccccCceEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccC--CCCeeEEEEEecCHHHHHH
Q 017897 254 TAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIA 331 (364)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~--~~~kg~afV~F~~~e~A~~ 331 (364)
. +...+..+.......||++.|.-+++++-|-..|.+| -.-...++++|+ ++++||+||.|.+..++..
T Consensus 177 s--------wedPsl~ew~~~DfRIfcgdlgNevnd~vl~raf~Kf-psf~~akviRdkRTgKSkgygfVSf~~pad~~r 247 (290)
T KOG0226|consen 177 S--------WEDPSLAEWDEDDFRIFCGDLGNEVNDDVLARAFKKF-PSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVR 247 (290)
T ss_pred c--------cCCcccccCccccceeecccccccccHHHHHHHHHhc-cchhhccccccccccccccceeeeecCHHHHHH
Confidence 1 1112222234455899999999999999999999997 888888999997 7999999999999999999
Q ss_pred HHh-cCCCeeCCeeeEEeecC
Q 017897 332 ALN-CSGAVLGSLPIRVSPSK 351 (364)
Q Consensus 332 Al~-lng~~~~g~~l~V~~ak 351 (364)
|+. |+|..++.++|++..+.
T Consensus 248 Amrem~gkyVgsrpiklRkS~ 268 (290)
T KOG0226|consen 248 AMREMNGKYVGSRPIKLRKSE 268 (290)
T ss_pred HHHhhcccccccchhHhhhhh
Confidence 999 99999999999886553
No 115
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.87 E-value=6e-09 Score=96.33 Aligned_cols=77 Identities=21% Similarity=0.396 Sum_probs=69.1
Q ss_pred CCCCCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH--ccccccCCeeEEEee
Q 017897 174 DEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS--LAGTMLGFYPVRVLP 251 (364)
Q Consensus 174 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~~~~rG~aFV~F~~~~~A~~al~--l~g~~l~g~~i~V~~ 251 (364)
++..-++||||+|-..+++.+|+++|.+||+|.++.++... ++|||+|.+.++|+.|.+ ++...|+|++|.|.|
T Consensus 224 eD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~----~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~W 299 (377)
T KOG0153|consen 224 EDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRK----GCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKW 299 (377)
T ss_pred cccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeeccc----ccceeeehhhHHHHHHHHhhcceeeecceEEEEEe
Confidence 34445789999999999999999999999999999998764 699999999999999996 887889999999999
Q ss_pred CCC
Q 017897 252 SKT 254 (364)
Q Consensus 252 a~~ 254 (364)
..+
T Consensus 300 g~~ 302 (377)
T KOG0153|consen 300 GRP 302 (377)
T ss_pred CCC
Confidence 865
No 116
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.85 E-value=1e-08 Score=94.87 Aligned_cols=76 Identities=24% Similarity=0.420 Sum_probs=69.7
Q ss_pred ccCceEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccCCCCeeEEEEEecCHHHHHHHHh--cCCCeeCCeeeEEee
Q 017897 272 EMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN--CSGAVLGSLPIRVSP 349 (364)
Q Consensus 272 ~~~~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~e~A~~Al~--lng~~~~g~~l~V~~ 349 (364)
....++|||++|-..++|.+|++.|.+| |+|.++.+.... ++|||+|.++++|..|.. +|...|+|.+|+|.|
T Consensus 225 D~~I~tLyIg~l~d~v~e~dIrdhFyqy-Geirsi~~~~~~----~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~W 299 (377)
T KOG0153|consen 225 DTSIKTLYIGGLNDEVLEQDIRDHFYQY-GEIRSIRILPRK----GCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKW 299 (377)
T ss_pred ccceeEEEecccccchhHHHHHHHHhhc-CCeeeEEeeccc----ccceeeehhhHHHHHHHHhhcceeeecceEEEEEe
Confidence 3456899999999999999999999997 999999998864 499999999999999998 788899999999999
Q ss_pred cCC
Q 017897 350 SKT 352 (364)
Q Consensus 350 ak~ 352 (364)
+++
T Consensus 300 g~~ 302 (377)
T KOG0153|consen 300 GRP 302 (377)
T ss_pred CCC
Confidence 988
No 117
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.83 E-value=2.3e-09 Score=109.49 Aligned_cols=160 Identities=18% Similarity=0.287 Sum_probs=132.8
Q ss_pred CCCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCC-CCCceEEEEEeCCHHHHHHHHH-ccccccCCeeEEEeeCC
Q 017897 176 VIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP-NSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSK 253 (364)
Q Consensus 176 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~-~~~rG~aFV~F~~~~~A~~al~-l~g~~l~g~~i~V~~a~ 253 (364)
..+++||+|||+..+++.+|+..|..+|.|.+|.|-..+ ++.--||||.|.+-..+-.|.. +.+..|..-.+++.+..
T Consensus 370 ~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG~ 449 (975)
T KOG0112|consen 370 RATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLGQ 449 (975)
T ss_pred hhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCcccccccc
Confidence 456789999999999999999999999999999987764 4445699999999999988885 88877765555555532
Q ss_pred CCCCCCCCCCCCCCccccccCceEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccCCCCeeEEEEEecCHHHHHHHH
Q 017897 254 TAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAAL 333 (364)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~e~A~~Al 333 (364)
. .....+.+++++|+.-+....|...|..| |.|..|.+-. ...||+|.|++...|+.|+
T Consensus 450 ~----------------kst~ttr~~sgglg~w~p~~~l~r~fd~f-Gpir~Idy~h----gq~yayi~yes~~~aq~a~ 508 (975)
T KOG0112|consen 450 P----------------KSTPTTRLQSGGLGPWSPVSRLNREFDRF-GPIRIIDYRH----GQPYAYIQYESPPAAQAAT 508 (975)
T ss_pred c----------------ccccceeeccCCCCCCChHHHHHHHhhcc-Ccceeeeccc----CCcceeeecccCccchhhH
Confidence 1 24456899999999999999999999997 9998876643 2349999999999999999
Q ss_pred h-cCCCeeCC--eeeEEeecCCCCCC
Q 017897 334 N-CSGAVLGS--LPIRVSPSKTPVRP 356 (364)
Q Consensus 334 ~-lng~~~~g--~~l~V~~ak~~~~~ 356 (364)
. |-|..|++ ++|.|.|+.++...
T Consensus 509 ~~~rgap~G~P~~r~rvdla~~~~~~ 534 (975)
T KOG0112|consen 509 HDMRGAPLGGPPRRLRVDLASPPGAT 534 (975)
T ss_pred HHHhcCcCCCCCcccccccccCCCCC
Confidence 9 99999976 68999999876543
No 118
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.82 E-value=7.7e-09 Score=104.21 Aligned_cols=78 Identities=28% Similarity=0.431 Sum_probs=72.3
Q ss_pred ccCceEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccCCCCeeEEEEEecCHHHHHHHHh-cCCCeeCCeeeEEeec
Q 017897 272 EMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSPS 350 (364)
Q Consensus 272 ~~~~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~e~A~~Al~-lng~~~~g~~l~V~~a 350 (364)
....+||||+.|+..++|.||..+|++| |+|.+|.++.. +|+|||++..+.+|.+|+. |+...+.++.|+|.|+
T Consensus 418 sV~SrTLwvG~i~k~v~e~dL~~~feef-GeiqSi~li~~----R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa 492 (894)
T KOG0132|consen 418 SVCSRTLWVGGIPKNVTEQDLANLFEEF-GEIQSIILIPP----RGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWA 492 (894)
T ss_pred eEeeeeeeeccccchhhHHHHHHHHHhc-ccceeEeeccC----CceeEEEEeehhHHHHHHHHHhcccccceeeEEeee
Confidence 4567999999999999999999999997 99999999874 5699999999999999999 9999999999999999
Q ss_pred CCCC
Q 017897 351 KTPV 354 (364)
Q Consensus 351 k~~~ 354 (364)
..+-
T Consensus 493 ~g~G 496 (894)
T KOG0132|consen 493 VGKG 496 (894)
T ss_pred ccCC
Confidence 8764
No 119
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.80 E-value=1.6e-08 Score=88.33 Aligned_cols=153 Identities=14% Similarity=0.208 Sum_probs=106.7
Q ss_pred cCccchhcccCCccccccHHHHHHHHhccCCcceEEecCCCCCCcccccCCCCCCCCCeEEeeecccCCCCCccccccch
Q 017897 70 ASDNHMERKMGESFKDCEMRDLVDMLSKLNPMAAEFVPPSLANGQIFNFNPAFFGPNGFGYTNNFIMHTDGTANTNGHTT 149 (364)
Q Consensus 70 ~~~~~~~~~~g~~~~~~~~~~L~~~Fs~~G~i~~v~v~~d~~t~~s~~~~~~~~~~~GfaFV~f~~~~~~~~~~~~a~~~ 149 (364)
..+.-+..++-||+-+.-.++|+.+|..|---+.+.+......++.-+ -+||+.|.+ .. +|+.
T Consensus 30 ~~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~---------pvaFatF~s-~q------~A~a- 92 (284)
T KOG1457|consen 30 EPGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCK---------PVAFATFTS-HQ------FALA- 92 (284)
T ss_pred cccccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCcccc---------ceEEEEecc-hH------HHHH-
Confidence 344556788899999999999999999997666666655443332213 799999999 66 5777
Q ss_pred hhhhhcCCC-----CCcc-ccccCCc-----c--------------------ccc-------------------------
Q 017897 150 TRRKRNGYS-----QGKR-RMNCRTS-----N--------------------AQQ------------------------- 173 (364)
Q Consensus 150 ~a~~~~~~~-----~g~~-~~~~~~~-----~--------------------~~~------------------------- 173 (364)
|+..+|+. .+.. +|..... . .++
T Consensus 93 -amnaLNGvrFDpE~~stLhiElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~a 171 (284)
T KOG1457|consen 93 -AMNALNGVRFDPETGSTLHIELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADA 171 (284)
T ss_pred -HHHHhcCeeeccccCceeEeeehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCcccccc
Confidence 88777765 1111 1100000 0 000
Q ss_pred --C----------------C----------------CCCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCce
Q 017897 174 --D----------------E----------------VIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLR 219 (364)
Q Consensus 174 --~----------------~----------------~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~~~~rG 219 (364)
. + ...-+|||.||.++++|++|+.+|+.|-.....+|....+. .
T Consensus 172 l~~~~~t~~~~l~a~~~~~P~a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~~g~--~ 249 (284)
T KOG1457|consen 172 LKENDTTKSEALSAPDSKAPSANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRARGGM--P 249 (284)
T ss_pred CCCccccchhhhhhhhhcCCcccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecCCCc--c
Confidence 0 0 00125999999999999999999999987776666543332 4
Q ss_pred EEEEEeCCHHHHHHHHH-cccccc
Q 017897 220 FAFVEFTDEEGARAALS-LAGTML 242 (364)
Q Consensus 220 ~aFV~F~~~~~A~~al~-l~g~~l 242 (364)
.||++|++.+.|..|+. |.|..|
T Consensus 250 vaf~~~~~~~~at~am~~lqg~~~ 273 (284)
T KOG1457|consen 250 VAFADFEEIEQATDAMNHLQGNLL 273 (284)
T ss_pred eEeecHHHHHHHHHHHHHhhccee
Confidence 89999999999999997 888655
No 120
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.78 E-value=1.5e-08 Score=87.65 Aligned_cols=81 Identities=23% Similarity=0.275 Sum_probs=73.1
Q ss_pred cCceEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccC--CCCeeEEEEEecCHHHHHHHHh-cCCCeeCCeeeEEee
Q 017897 273 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSP 349 (364)
Q Consensus 273 ~~~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~--~~~kg~afV~F~~~e~A~~Al~-lng~~~~g~~l~V~~ 349 (364)
.....+||..+|..+.+.++..+|.+|.|.|..+++.|+. |.++|||||+|++.+.|.-|.+ ||+..|.++.|.|.+
T Consensus 47 ~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~v 126 (214)
T KOG4208|consen 47 EIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHV 126 (214)
T ss_pred CCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEE
Confidence 3457899999999999999999999986888888888876 8899999999999999999999 999999999999998
Q ss_pred cCCC
Q 017897 350 SKTP 353 (364)
Q Consensus 350 ak~~ 353 (364)
..+-
T Consensus 127 mppe 130 (214)
T KOG4208|consen 127 MPPE 130 (214)
T ss_pred eCch
Confidence 6553
No 121
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.75 E-value=1.3e-08 Score=94.16 Aligned_cols=77 Identities=23% Similarity=0.499 Sum_probs=71.3
Q ss_pred CcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEeCCHHHHHHHHH-ccccccCCeeEEEeeCCC
Q 017897 178 RRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS--VLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSKT 254 (364)
Q Consensus 178 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~~~--~rG~aFV~F~~~~~A~~al~-l~g~~l~g~~i~V~~a~~ 254 (364)
...|||.-|.+-+|.++|.-+|+.||.|.+|.+++|..+ +.-||||+|++.+++++|.- |++..|..+.|.|.++..
T Consensus 239 eNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDFSQS 318 (479)
T KOG0415|consen 239 ENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDFSQS 318 (479)
T ss_pred cceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeehhhh
Confidence 467999999999999999999999999999999999855 68899999999999999985 999999999999998753
No 122
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.75 E-value=1.4e-08 Score=94.75 Aligned_cols=174 Identities=24% Similarity=0.221 Sum_probs=131.9
Q ss_pred CCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecC--CCCCceEEEEEeCCHHHHHHHHHcccc-ccCCeeEEEeeCC
Q 017897 177 IRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGD--PNSVLRFAFVEFTDEEGARAALSLAGT-MLGFYPVRVLPSK 253 (364)
Q Consensus 177 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d--~~~~rG~aFV~F~~~~~A~~al~l~g~-~l~g~~i~V~~a~ 253 (364)
...++|+|++...+.+.++..++..+|....+.+... ...++|++++.|...+.+..|+.+.+. .+.++.+......
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~~ 166 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLNT 166 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCcccc
Confidence 4678999999999999999999999998877776653 346799999999999999999996664 4444444433322
Q ss_pred CCCCCCCCCCCCCCccccccCceEEE-EeCCCCCCCHHHHHHHhhhcCCceeEEEEeccC--CCCeeEEEEEecCHHHHH
Q 017897 254 TAIAPVNPTFLPRSEDEREMCSRTIY-CTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAI 330 (364)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~l~-V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~--~~~kg~afV~F~~~e~A~ 330 (364)
...... ..+..... .....++| |.+++..+++++|+..|... |.|..++++.+. +.++|+|+|.|.....+.
T Consensus 167 ~~~~~~---~n~~~~~~-~~~s~~~~~~~~~~f~~~~d~~~~~~~~~-~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~ 241 (285)
T KOG4210|consen 167 RRGLRP---KNKLSRLS-SGPSDTIFFVGELDFSLTRDDLKEHFVSS-GEITSVRLPTDEESGDSKGFAYVDFSAGNSKK 241 (285)
T ss_pred cccccc---cchhcccc-cCccccceeecccccccchHHHhhhccCc-CcceeeccCCCCCccchhhhhhhhhhhchhHH
Confidence 111000 00111111 22334555 99999999999999999874 999999998875 689999999999999999
Q ss_pred HHHhcCCCeeCCeeeEEeecCCCCC
Q 017897 331 AALNCSGAVLGSLPIRVSPSKTPVR 355 (364)
Q Consensus 331 ~Al~lng~~~~g~~l~V~~ak~~~~ 355 (364)
.++..+...+.++++.+.+.++.+.
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (285)
T KOG4210|consen 242 LALNDQTRSIGGRPLRLEEDEPRPK 266 (285)
T ss_pred HHhhcccCcccCcccccccCCCCcc
Confidence 9887767799999999999877643
No 123
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.74 E-value=1.8e-08 Score=101.58 Aligned_cols=74 Identities=24% Similarity=0.348 Sum_probs=68.6
Q ss_pred CCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-ccccccCCeeEEEeeCCC
Q 017897 177 IRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSKT 254 (364)
Q Consensus 177 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~~~~rG~aFV~F~~~~~A~~al~-l~g~~l~g~~i~V~~a~~ 254 (364)
..+|||||+|+..+++.+|..+|+.||+|.+|.++.. ||+|||.+....+|.+|+. |....+.++.|+|.|+..
T Consensus 420 ~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~----R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g 494 (894)
T KOG0132|consen 420 CSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP----RGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVG 494 (894)
T ss_pred eeeeeeeccccchhhHHHHHHHHHhcccceeEeeccC----CceeEEEEeehhHHHHHHHHHhcccccceeeEEeeecc
Confidence 4578999999999999999999999999999998764 5899999999999999997 999999999999999853
No 124
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.74 E-value=1.6e-08 Score=93.54 Aligned_cols=82 Identities=20% Similarity=0.316 Sum_probs=75.0
Q ss_pred ccCceEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccC--CCCeeEEEEEecCHHHHHHHHh-cCCCeeCCeeeEEe
Q 017897 272 EMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVS 348 (364)
Q Consensus 272 ~~~~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~--~~~kg~afV~F~~~e~A~~Al~-lng~~~~g~~l~V~ 348 (364)
.++...|||.-|.+-+++++|.-+|+.| |.|.+|.|++|. |.+-.||||+|++.++..+|.- |.+..|++++|.|.
T Consensus 236 ~PPeNVLFVCKLNPVTtDeDLeiIFSrF-G~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVD 314 (479)
T KOG0415|consen 236 KPPENVLFVCKLNPVTTDEDLEIIFSRF-GKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVD 314 (479)
T ss_pred CCCcceEEEEecCCcccccchhhHHhhc-ccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEee
Confidence 3456899999999999999999999997 999999999996 6677899999999999999998 99999999999999
Q ss_pred ecCCCC
Q 017897 349 PSKTPV 354 (364)
Q Consensus 349 ~ak~~~ 354 (364)
|++...
T Consensus 315 FSQSVs 320 (479)
T KOG0415|consen 315 FSQSVS 320 (479)
T ss_pred hhhhhh
Confidence 987643
No 125
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.72 E-value=3.5e-08 Score=96.29 Aligned_cols=81 Identities=22% Similarity=0.334 Sum_probs=73.1
Q ss_pred CCCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEeCCHHHHHHHHH-ccccccCCeeEEEeeC
Q 017897 176 VIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS--VLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPS 252 (364)
Q Consensus 176 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~~~--~rG~aFV~F~~~~~A~~al~-l~g~~l~g~~i~V~~a 252 (364)
...++|||.+|+..+-..+|+.+|++||.|+-.+++.+..+ .+.||||++.+.++|.+||. |+.+.|.|+.|.|..+
T Consensus 403 ~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEka 482 (940)
T KOG4661|consen 403 TLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKA 482 (940)
T ss_pred ccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeec
Confidence 34578999999999999999999999999999999987654 38899999999999999998 9999999999999998
Q ss_pred CCCC
Q 017897 253 KTAI 256 (364)
Q Consensus 253 ~~~~ 256 (364)
+..+
T Consensus 483 KNEp 486 (940)
T KOG4661|consen 483 KNEP 486 (940)
T ss_pred ccCc
Confidence 7643
No 126
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.71 E-value=1.5e-08 Score=90.03 Aligned_cols=142 Identities=15% Similarity=0.188 Sum_probs=106.1
Q ss_pred HHHHHhccCCcceEEecCCCCCCcccccCCCCCCCCCeEEeeecccCCCCCccccccchhhhhhcCCC-CCccc--cccC
Q 017897 91 LVDMLSKLNPMAAEFVPPSLANGQIFNFNPAFFGPNGFGYTNNFIMHTDGTANTNGHTTTRRKRNGYS-QGKRR--MNCR 167 (364)
Q Consensus 91 L~~~Fs~~G~i~~v~v~~d~~t~~s~~~~~~~~~~~GfaFV~f~~~~~~~~~~~~a~~~~a~~~~~~~-~g~~~--~~~~ 167 (364)
+...|+.+-.+....+.++...... +++|+.|.. .. +... +-...+.. .|++. +..-
T Consensus 116 ~~~~f~~~p~L~ktk~v~~~p~~~~-----------~~~~~~~k~-s~-------a~~k-~~~~~~~Kki~~~~VR~a~g 175 (290)
T KOG0226|consen 116 LPVVFSEYPSLVKTKLVRDRPQPIR-----------PEAFESFKA-SD-------ALLK-AETEKEKKKIGKPPVRLAAG 175 (290)
T ss_pred chhhhccchhhhhhhhhhcCCCccC-----------cccccCcch-hh-------hhhh-hccccccccccCcceeeccc
Confidence 4677888888888888888777655 999999987 33 2220 11111111 33331 1111
Q ss_pred Ccccc----cCCCCCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEeCCHHHHHHHHH-cccc
Q 017897 168 TSNAQ----QDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALS-LAGT 240 (364)
Q Consensus 168 ~~~~~----~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~~--~~rG~aFV~F~~~~~A~~al~-l~g~ 240 (364)
..|.. ..+.....||+|.|.-+++++.|-..|.+|-.....++++|+. +++||+||.|.+..++..|++ ++|.
T Consensus 176 tswedPsl~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gk 255 (290)
T KOG0226|consen 176 TSWEDPSLAEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGK 255 (290)
T ss_pred cccCCcccccCccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhccc
Confidence 22222 2344567899999999999999999999999999999999984 589999999999999999997 9999
Q ss_pred ccCCeeEEEeeC
Q 017897 241 MLGFYPVRVLPS 252 (364)
Q Consensus 241 ~l~g~~i~V~~a 252 (364)
.++.++|++..+
T Consensus 256 yVgsrpiklRkS 267 (290)
T KOG0226|consen 256 YVGSRPIKLRKS 267 (290)
T ss_pred ccccchhHhhhh
Confidence 999999998765
No 127
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.67 E-value=4.3e-07 Score=90.80 Aligned_cols=155 Identities=14% Similarity=0.041 Sum_probs=106.9
Q ss_pred cccCCccccccHHHHHHHHhccCCcceEEecCCCCCCcccccCCCCCCCCCeEEeeecccCCCCCccccccchhhhhhcC
Q 017897 77 RKMGESFKDCEMRDLVDMLSKLNPMAAEFVPPSLANGQIFNFNPAFFGPNGFGYTNNFIMHTDGTANTNGHTTTRRKRNG 156 (364)
Q Consensus 77 ~~~g~~~~~~~~~~L~~~Fs~~G~i~~v~v~~d~~t~~s~~~~~~~~~~~GfaFV~f~~~~~~~~~~~~a~~~~a~~~~~ 156 (364)
..+-|..|.++..|.+.+|--. .|-++.|..++..+.. - |-++|.|.. .+ +++. |+...+
T Consensus 314 ~~~~gm~fn~~~nd~rkfF~g~-~~~~~~l~~~~v~~~~-t---------G~~~v~f~~-~~------~~q~--A~~rn~ 373 (944)
T KOG4307|consen 314 NNYKGMEFNNDFNDGRKFFPGR-NAQSTDLSENRVAPPQ-T---------GRKTVMFTP-QA------PFQN--AFTRNP 373 (944)
T ss_pred eeecccccccccchhhhhcCcc-cccccchhhhhcCCCc-C---------CceEEEecC-cc------hHHH--HHhcCc
Confidence 3356788999999999998653 4667777777777654 3 999999999 66 5666 665443
Q ss_pred CC----------CCccccccC---Cc------------------ccc-----c---CCCCCcEEEEeCCCCCCcHHHHHH
Q 017897 157 YS----------QGKRRMNCR---TS------------------NAQ-----Q---DEVIRRTVYVSDIDQQVTEEQLAT 197 (364)
Q Consensus 157 ~~----------~g~~~~~~~---~~------------------~~~-----~---~~~~~~~lfV~nLp~~~te~~L~~ 197 (364)
.. .|..-.+.. .. .+. + .......|||..||..+++.++.+
T Consensus 374 ~~~~~R~~q~~P~g~~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~ 453 (944)
T KOG4307|consen 374 SDDVNRPFQTGPPGNLGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVN 453 (944)
T ss_pred hhhhhcceeecCCCccccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhh
Confidence 32 111100000 00 000 0 001224599999999999999999
Q ss_pred HhhcCCCeeE-EEEecCC-CCCceEEEEEeCCHHHHHHHHH-ccccccCCeeEEEee
Q 017897 198 LFLTCGQVVD-CRICGDP-NSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLP 251 (364)
Q Consensus 198 ~F~~~G~i~~-~~i~~d~-~~~rG~aFV~F~~~~~A~~al~-l~g~~l~g~~i~V~~ 251 (364)
+|...-.|++ |.|.+-+ +.-++-|||.|..++++..|.. ...+.++.+-|+|..
T Consensus 454 ~f~~~~~Ved~I~lt~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~s 510 (944)
T KOG4307|consen 454 KFMGAAAVEDFIELTRLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDS 510 (944)
T ss_pred hhhhhhhhhheeEeccCCcccccchhhheeccccccchhhhcccccccCceEEEeec
Confidence 9998878877 5555544 3457899999999999999887 677777778888865
No 128
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=98.67 E-value=1.1e-07 Score=89.10 Aligned_cols=163 Identities=21% Similarity=0.185 Sum_probs=114.9
Q ss_pred CcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEec--CCCCCceEEEEEeCCHHHHHHHHHccccccCCeeEEEeeCCCC
Q 017897 178 RRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICG--DPNSVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSKTA 255 (364)
Q Consensus 178 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~--d~~~~rG~aFV~F~~~~~A~~al~l~g~~l~g~~i~V~~a~~~ 255 (364)
...|-.++||+..++.+|..+|+..-...-.+.+. -.+...|.|.|.|.+++.-+.|++-+.+.+.++.|.|..+...
T Consensus 60 ~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~RdlalkRhkhh~g~ryievYka~ge 139 (508)
T KOG1365|consen 60 NVVVRARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLALKRHKHHMGTRYIEVYKATGE 139 (508)
T ss_pred ceEEEecCCCCCcccCCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhhHhhhhhccCCceeeeccCch
Confidence 34566789999999999999998542221111111 1233458999999999999999998888899999999876532
Q ss_pred C----CCC----CCCCCCCCccccccCceEEEEeCCCCCCCHHHHHHHhhhc---CCceeEEEEecc-CCCCeeEEEEEe
Q 017897 256 I----APV----NPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESV---CGEVQRLRLLGD-YQHSTRIAFVEF 323 (364)
Q Consensus 256 ~----~~~----~~~~~~~~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~~---~G~I~~v~i~~d-~~~~kg~afV~F 323 (364)
. .+. .+.|.++. ..-.|.+++||+++++.++..+|.+. -|....|-.++. +|+.+|-|||.|
T Consensus 140 ~f~~iagg~s~e~~~flsk~------~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlf 213 (508)
T KOG1365|consen 140 EFLKIAGGTSNEAAPFLSKE------NQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLF 213 (508)
T ss_pred hheEecCCccccCCCCCCcc------cceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEe
Confidence 1 110 11122211 12467889999999999999999643 235566655555 589999999999
Q ss_pred cCHHHHHHHHhcCCCeeCCeeeE
Q 017897 324 AMAESAIAALNCSGAVLGSLPIR 346 (364)
Q Consensus 324 ~~~e~A~~Al~lng~~~~g~~l~ 346 (364)
...++|..||.-|-..++-|.|.
T Consensus 214 a~ee~aq~aL~khrq~iGqRYIE 236 (508)
T KOG1365|consen 214 ACEEDAQFALRKHRQNIGQRYIE 236 (508)
T ss_pred cCHHHHHHHHHHHHHHHhHHHHH
Confidence 99999999998554455544443
No 129
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.66 E-value=8.7e-08 Score=82.97 Aligned_cols=76 Identities=26% Similarity=0.341 Sum_probs=67.8
Q ss_pred CCcEEEEeCCCCCCcHHHHHHHhhcC-CCeeEEEEecCC--CCCceEEEEEeCCHHHHHHHHH-ccccccCCeeEEEeeC
Q 017897 177 IRRTVYVSDIDQQVTEEQLATLFLTC-GQVVDCRICGDP--NSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPS 252 (364)
Q Consensus 177 ~~~~lfV~nLp~~~te~~L~~~F~~~-G~i~~~~i~~d~--~~~rG~aFV~F~~~~~A~~al~-l~g~~l~g~~i~V~~a 252 (364)
...-+||+.+|..+.+.++..+|.++ |.|..+++.+.+ +.|+|||||+|++++.|.-|-+ ||+..+.|+-|.+..-
T Consensus 48 ~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vm 127 (214)
T KOG4208|consen 48 IEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVM 127 (214)
T ss_pred CccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEe
Confidence 44679999999999999999999999 678888887877 4579999999999999999998 9999999998888764
No 130
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.59 E-value=5.5e-07 Score=83.47 Aligned_cols=155 Identities=15% Similarity=0.092 Sum_probs=108.6
Q ss_pred chhcccCCccccccHHHHHHHHhccCCcce--------EEecCCCCCCcccccCCCCCCCCCeEEeeecccCCCCCcccc
Q 017897 74 HMERKMGESFKDCEMRDLVDMLSKLNPMAA--------EFVPPSLANGQIFNFNPAFFGPNGFGYTNNFIMHTDGTANTN 145 (364)
Q Consensus 74 ~~~~~~g~~~~~~~~~~L~~~Fs~~G~i~~--------v~v~~d~~t~~s~~~~~~~~~~~GfaFV~f~~~~~~~~~~~~ 145 (364)
+..+++-||+-+.|.+++.++|++||-|.. |++-++.. | ...|=|.+.|...++
T Consensus 134 Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~-G----------~lKGDaLc~y~K~ES------- 195 (382)
T KOG1548|consen 134 NTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQ-G----------KLKGDALCCYIKRES------- 195 (382)
T ss_pred CceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCC-C----------CccCceEEEeecccH-------
Confidence 445788999999999999999999997743 34444433 2 223888899988444
Q ss_pred ccchhhhhhcCCC--CCccccccCCccc----------------------------------------ccCCCCCcEEEE
Q 017897 146 GHTTTRRKRNGYS--QGKRRMNCRTSNA----------------------------------------QQDEVIRRTVYV 183 (364)
Q Consensus 146 a~~~~a~~~~~~~--~g~~~~~~~~~~~----------------------------------------~~~~~~~~~lfV 183 (364)
+.. |++.++.. .|+. +++..+ .......++|.+
T Consensus 196 VeL--A~~ilDe~~~rg~~---~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~ 270 (382)
T KOG1548|consen 196 VEL--AIKILDEDELRGKK---LRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVIL 270 (382)
T ss_pred HHH--HHHHhCcccccCcE---EEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEe
Confidence 666 77666554 2222 111110 011234568999
Q ss_pred eCCC----CCCc-------HHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-ccccccCCeeEEEee
Q 017897 184 SDID----QQVT-------EEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLP 251 (364)
Q Consensus 184 ~nLp----~~~t-------e~~L~~~F~~~G~i~~~~i~~d~~~~rG~aFV~F~~~~~A~~al~-l~g~~l~g~~i~V~~ 251 (364)
.|+= ...+ .++|++-..+||.|..|.|.-. .+.|.+-|.|.+.++|..||+ |+|..+.||.|....
T Consensus 271 kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d~--hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i 348 (382)
T KOG1548|consen 271 KNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYDR--HPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASI 348 (382)
T ss_pred eecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEecc--CCCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEE
Confidence 9873 1222 3566677889999999988743 235899999999999999999 999999999998876
Q ss_pred CC
Q 017897 252 SK 253 (364)
Q Consensus 252 a~ 253 (364)
..
T Consensus 349 ~D 350 (382)
T KOG1548|consen 349 WD 350 (382)
T ss_pred eC
Confidence 53
No 131
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.57 E-value=1.6e-07 Score=91.83 Aligned_cols=83 Identities=16% Similarity=0.251 Sum_probs=75.0
Q ss_pred ccCceEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccC--CCCeeEEEEEecCHHHHHHHHh-cCCCeeCCeeeEEe
Q 017897 272 EMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVS 348 (364)
Q Consensus 272 ~~~~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~--~~~kg~afV~F~~~e~A~~Al~-lng~~~~g~~l~V~ 348 (364)
....++|+|.+|...+.-.+|+.+|++| |.|+-.+|+.+- -.-++|+||++.+.++|.+||. ||-++|.|+.|.|.
T Consensus 402 s~~gRNlWVSGLSstTRAtDLKnlFSKy-GKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVE 480 (940)
T KOG4661|consen 402 STLGRNLWVSGLSSTTRATDLKNLFSKY-GKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVE 480 (940)
T ss_pred cccccceeeeccccchhhhHHHHHHHHh-cceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeee
Confidence 5567899999999999999999999997 999999999874 2367899999999999999999 99999999999999
Q ss_pred ecCCCCC
Q 017897 349 PSKTPVR 355 (364)
Q Consensus 349 ~ak~~~~ 355 (364)
.+++-+.
T Consensus 481 kaKNEp~ 487 (940)
T KOG4661|consen 481 KAKNEPG 487 (940)
T ss_pred ecccCcc
Confidence 9987543
No 132
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.53 E-value=1.3e-07 Score=92.70 Aligned_cols=171 Identities=19% Similarity=0.196 Sum_probs=113.5
Q ss_pred cccCCCCCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-ccccccCCeeEEE
Q 017897 171 AQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRV 249 (364)
Q Consensus 171 ~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~~~~rG~aFV~F~~~~~A~~al~-l~g~~l~g~~i~V 249 (364)
+.......++|+|-|||.++++++|+.+|+.||+|..++....+ +|.+||+|-|..+|+.|++ |++..+.|+.|.
T Consensus 68 p~~~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~~---~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k- 143 (549)
T KOG4660|consen 68 PSEKDMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPNK---RGIVFVEFYDVRDAERALKALNRREIAGKRIK- 143 (549)
T ss_pred CCcccCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhccccc---CceEEEEEeehHhHHHHHHHHHHHHhhhhhhc-
Confidence 33334557899999999999999999999999999986654433 5899999999999999998 999999999888
Q ss_pred eeCCCCCCCCC---CCCC-----CCCcc-ccccCceEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccCCCCeeEEE
Q 017897 250 LPSKTAIAPVN---PTFL-----PRSED-EREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAF 320 (364)
Q Consensus 250 ~~a~~~~~~~~---~~~~-----~~~~~-~~~~~~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~~~~kg~af 320 (364)
.+-........ ..+. |.... ...-..-.+++- |++..+..-++.+|.-+ |.+.. +......+ .-|
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~p~a~s~pgg~~~~~~~g~-l~P~~s~~~~~~~~~~~-~~~~~-~~~~~~~h---q~~ 217 (549)
T KOG4660|consen 144 RPGGARRAMGLQSGTSFLNHFGSPLANSPPGGWPRGQLFGM-LSPTRSSILLEHISSVD-GSSPG-RETPLLNH---QRF 217 (549)
T ss_pred CCCcccccchhcccchhhhhccchhhcCCCCCCcCCcceee-eccchhhhhhhcchhcc-Ccccc-ccccchhh---hhh
Confidence 22110000000 0000 00000 000012234433 88888887677777654 87765 33222221 568
Q ss_pred EEecCHHHHHHHHh-cCCCeeCCeeeEEeecCC
Q 017897 321 VEFAMAESAIAALN-CSGAVLGSLPIRVSPSKT 352 (364)
Q Consensus 321 V~F~~~e~A~~Al~-lng~~~~g~~l~V~~ak~ 352 (364)
+.|.+..++..++. + |..+.+......++.+
T Consensus 218 ~~~~~~~s~a~~~~~~-G~~~s~~~~v~t~S~~ 249 (549)
T KOG4660|consen 218 VEFADNRSYAFSEPRG-GFLISNSSGVITFSGP 249 (549)
T ss_pred hhhccccchhhcccCC-ceecCCCCceEEecCC
Confidence 88888888866666 5 7788777777777654
No 133
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.52 E-value=3.9e-07 Score=82.42 Aligned_cols=81 Identities=25% Similarity=0.365 Sum_probs=73.6
Q ss_pred CceEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccC-CCCeeEEEEEecCHHHHHHHHh-cCCCeeCCeeeEEeecC
Q 017897 274 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY-QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSPSK 351 (364)
Q Consensus 274 ~~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~-~~~kg~afV~F~~~e~A~~Al~-lng~~~~g~~l~V~~ak 351 (364)
....|+|.|||..++++||+++|..| |.+..+.+-.++ |.+.|.|-|.|...++|..|+. +||+.++|+.|++....
T Consensus 82 ~~~~v~v~NL~~~V~~~Dl~eLF~~~-~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~ 160 (243)
T KOG0533|consen 82 RSTKVNVSNLPYGVIDADLKELFAEF-GELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIIS 160 (243)
T ss_pred CcceeeeecCCcCcchHHHHHHHHHh-ccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEec
Confidence 34789999999999999999999997 999999998887 8899999999999999999999 99999999999998876
Q ss_pred CCCC
Q 017897 352 TPVR 355 (364)
Q Consensus 352 ~~~~ 355 (364)
++..
T Consensus 161 ~~~~ 164 (243)
T KOG0533|consen 161 SPSQ 164 (243)
T ss_pred Cccc
Confidence 5543
No 134
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=98.49 E-value=4.7e-08 Score=91.65 Aligned_cols=163 Identities=21% Similarity=0.228 Sum_probs=123.1
Q ss_pred CcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCC-----CceEEEEEeCCHHHHHHHHHccccccCCeeEEEeeC
Q 017897 178 RRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS-----VLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPS 252 (364)
Q Consensus 178 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~~~-----~rG~aFV~F~~~~~A~~al~l~g~~l~g~~i~V~~a 252 (364)
...|-|.||.+.+|.++++.+|.-.|.|.+++|+...+. ....|||.|.+...+..|..|-++.+-++.|.|.++
T Consensus 7 ~~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfvdraliv~p~ 86 (479)
T KOG4676|consen 7 LGVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFVDRALIVRPY 86 (479)
T ss_pred CceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhccceeeeeeEEEEec
Confidence 347899999999999999999999999999999885432 367999999999999999888888888888888764
Q ss_pred CCCCCCC----------------CC------C--------C-------CCCCc---c--ccccCceEEEEeCCCCCCCHH
Q 017897 253 KTAIAPV----------------NP------T--------F-------LPRSE---D--EREMCSRTIYCTNIDKKVTQG 290 (364)
Q Consensus 253 ~~~~~~~----------------~~------~--------~-------~~~~~---~--~~~~~~~~l~V~nLp~~~tee 290 (364)
-....+. -+ . . .|... + ..+...++++|.+|+..+...
T Consensus 87 ~~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt~~v~sl~~~~~l~ 166 (479)
T KOG4676|consen 87 GDEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRTREVQSLISAAILP 166 (479)
T ss_pred CCCCCccHHHHHhcCcccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhhhhhhcchhhhcch
Confidence 3210000 00 0 0 00000 0 012235799999999999999
Q ss_pred HHHHHhhhcCCceeEEEEeccCCCCeeEEEEEecCHHHHHHHHhcCCCeeCCe
Q 017897 291 DIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALNCSGAVLGSL 343 (364)
Q Consensus 291 ~L~~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~e~A~~Al~lng~~~~g~ 343 (364)
++.+.|..+ |+|.+..+.-.. ...+|.++|....+.+.|+.++|.++.-+
T Consensus 167 e~~e~f~r~-Gev~ya~~ask~--~s~~c~~sf~~qts~~halr~~gre~k~q 216 (479)
T KOG4676|consen 167 ESGESFERK-GEVSYAHTASKS--RSSSCSHSFRKQTSSKHALRSHGRERKRQ 216 (479)
T ss_pred hhhhhhhhc-chhhhhhhhccC--CCcchhhhHhhhhhHHHHHHhcchhhhhh
Confidence 999999997 999887765433 22378899999999999999888877633
No 135
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.47 E-value=1.4e-07 Score=82.30 Aligned_cols=141 Identities=18% Similarity=0.188 Sum_probs=111.3
Q ss_pred cchhcccCCccccccHHHHHHHHhccCCcceEEecCCCCCCcccccCCCCCCCCCeEEeeecccCCCCCccccccchhhh
Q 017897 73 NHMERKMGESFKDCEMRDLVDMLSKLNPMAAEFVPPSLANGQIFNFNPAFFGPNGFGYTNNFIMHTDGTANTNGHTTTRR 152 (364)
Q Consensus 73 ~~~~~~~g~~~~~~~~~~L~~~Fs~~G~i~~v~v~~d~~t~~s~~~~~~~~~~~GfaFV~f~~~~~~~~~~~~a~~~~a~ 152 (364)
..+..+++.++-+++++-|.|+|=+-|||..|.|+.++... . -||||.|.+..+ ... |+
T Consensus 8 ~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~-~-----------kFa~v~f~~E~s-------v~~--a~ 66 (267)
T KOG4454|consen 8 MDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQE-Q-----------KFAYVFFPNENS-------VQL--AG 66 (267)
T ss_pred hhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCC-C-----------ceeeeecccccc-------hhh--hh
Confidence 34556778999999999999999999999999998887654 2 599999999444 677 88
Q ss_pred hhcCCC--CCccccccCCcccccCCCCCcEEEEeC----CCCCCcHHHHHHHhhcCCCeeEEEEecCCC-CCceEEEEEe
Q 017897 153 KRNGYS--QGKRRMNCRTSNAQQDEVIRRTVYVSD----IDQQVTEEQLATLFLTCGQVVDCRICGDPN-SVLRFAFVEF 225 (364)
Q Consensus 153 ~~~~~~--~g~~~~~~~~~~~~~~~~~~~~lfV~n----Lp~~~te~~L~~~F~~~G~i~~~~i~~d~~-~~rG~aFV~F 225 (364)
+.+|+. .+.+ ...+++.|+ |...++++.+.+.|+..|.+..+++.++.+ .++.++|+++
T Consensus 67 ~L~ng~~l~~~e--------------~q~~~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~d~rnrn~~~~~~ 132 (267)
T KOG4454|consen 67 QLENGDDLEEDE--------------EQRTLRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDNDGRNRNFGFVTY 132 (267)
T ss_pred hhcccchhccch--------------hhcccccCCCcchhhhhcchhhheeeecccCCCCCccccccccCCccCccchhh
Confidence 888766 3433 346788888 888999999999999999999999998874 5788999999
Q ss_pred CCHHHHHHHHH-ccccccCCeeEE
Q 017897 226 TDEEGARAALS-LAGTMLGFYPVR 248 (364)
Q Consensus 226 ~~~~~A~~al~-l~g~~l~g~~i~ 248 (364)
.-.-+.-.++. ..+..+.-+++.
T Consensus 133 qr~~~~P~~~~~y~~l~~~~~~~~ 156 (267)
T KOG4454|consen 133 QRLCAVPFALDLYQGLELFQKKVT 156 (267)
T ss_pred hhhhcCcHHhhhhcccCcCCCCcc
Confidence 88777777776 555444333333
No 136
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.44 E-value=1.6e-07 Score=87.81 Aligned_cols=160 Identities=18% Similarity=0.202 Sum_probs=119.7
Q ss_pred hhcccCCccccccHHHHHHHHhccCCcceEEecCCCCCCcccccCCCCCCCCCeEEeeecccCCCCCccccccchhhhhh
Q 017897 75 MERKMGESFKDCEMRDLVDMLSKLNPMAAEFVPPSLANGQIFNFNPAFFGPNGFGYTNNFIMHTDGTANTNGHTTTRRKR 154 (364)
Q Consensus 75 ~~~~~g~~~~~~~~~~L~~~Fs~~G~i~~v~v~~d~~t~~s~~~~~~~~~~~GfaFV~f~~~~~~~~~~~~a~~~~a~~~ 154 (364)
...+.|.++|..++.+...++.+.|.+..+.+........+ + ||+++.|.. .+ .+.. +++.
T Consensus 89 ~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~s-k---------~~~s~~f~~-ks------~~~~--~l~~ 149 (285)
T KOG4210|consen 89 STFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSS-K---------GGLSVHFAG-KS------QFFA--ALEE 149 (285)
T ss_pred ccccccccccchhhccccccchhhcCcccchhhhhcccccc-c---------cceeecccc-HH------HHHH--HHHh
Confidence 35567999999999999999999999999998888877777 7 999999998 44 2444 4443
Q ss_pred cCC-C----CCcccccc-CCccc-----ccCCCCCcEEE-EeCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCC--CceE
Q 017897 155 NGY-S----QGKRRMNC-RTSNA-----QQDEVIRRTVY-VSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS--VLRF 220 (364)
Q Consensus 155 ~~~-~----~g~~~~~~-~~~~~-----~~~~~~~~~lf-V~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~~~--~rG~ 220 (364)
... . .+...++- +.... ........++| |++|+..+++++|+..|..+|.|..++++.++.+ .+||
T Consensus 150 s~~~~~~~~~~~~dl~~~~~~~~~n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~ 229 (285)
T KOG4210|consen 150 SGSKVLDGNKGEKDLNTRRGLRPKNKLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGF 229 (285)
T ss_pred hhccccccccccCcccccccccccchhcccccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhh
Confidence 321 1 11111111 11101 11122234555 9999999999999999999999999999998754 6999
Q ss_pred EEEEeCCHHHHHHHHHccccccCCeeEEEeeCC
Q 017897 221 AFVEFTDEEGARAALSLAGTMLGFYPVRVLPSK 253 (364)
Q Consensus 221 aFV~F~~~~~A~~al~l~g~~l~g~~i~V~~a~ 253 (364)
|||.|.....+..++......+.++++.+....
T Consensus 230 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (285)
T KOG4210|consen 230 AYVDFSAGNSKKLALNDQTRSIGGRPLRLEEDE 262 (285)
T ss_pred hhhhhhhchhHHHHhhcccCcccCcccccccCC
Confidence 999999999999888766667899999998865
No 137
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.41 E-value=1.1e-06 Score=79.46 Aligned_cols=80 Identities=24% Similarity=0.287 Sum_probs=71.8
Q ss_pred CCCCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCC-CCCceEEEEEeCCHHHHHHHHH-ccccccCCeeEEEeeC
Q 017897 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP-NSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPS 252 (364)
Q Consensus 175 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~-~~~rG~aFV~F~~~~~A~~al~-l~g~~l~g~~i~V~~a 252 (364)
+....+|+|.|||..+++++|+++|..||.+..+-+..++ +.+.|.|-|.|...++|.+|++ +++..+.|+++.+...
T Consensus 80 ~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i 159 (243)
T KOG0533|consen 80 ETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEII 159 (243)
T ss_pred CCCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEe
Confidence 3345789999999999999999999999999999998888 5689999999999999999998 9999999999988875
Q ss_pred CC
Q 017897 253 KT 254 (364)
Q Consensus 253 ~~ 254 (364)
..
T Consensus 160 ~~ 161 (243)
T KOG0533|consen 160 SS 161 (243)
T ss_pred cC
Confidence 43
No 138
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.41 E-value=5.7e-07 Score=81.41 Aligned_cols=83 Identities=28% Similarity=0.350 Sum_probs=75.3
Q ss_pred cCCCCCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEeCCHHHHHHHHHccccccCCeeEEEe
Q 017897 173 QDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVL 250 (364)
Q Consensus 173 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~~--~~rG~aFV~F~~~~~A~~al~l~g~~l~g~~i~V~ 250 (364)
+...+.+.+||+|+...+|.+++...|+.||.|..+.++.|+. +++||+||+|.+.+.++.++.|++..|.|+.+.|.
T Consensus 96 ~~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~l~gs~i~~~~i~vt 175 (231)
T KOG4209|consen 96 QKEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYKLDGSEIPGPAIEVT 175 (231)
T ss_pred hhccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhhcCCcccccccceee
Confidence 3455678999999999999999999999999999999999874 47999999999999999999999999999999999
Q ss_pred eCCCC
Q 017897 251 PSKTA 255 (364)
Q Consensus 251 ~a~~~ 255 (364)
+....
T Consensus 176 ~~r~~ 180 (231)
T KOG4209|consen 176 LKRTN 180 (231)
T ss_pred eeeee
Confidence 87654
No 139
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.40 E-value=6.8e-07 Score=89.61 Aligned_cols=78 Identities=23% Similarity=0.323 Sum_probs=71.1
Q ss_pred CCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCCC-----CCceEEEEEeCCHHHHHHHHH-ccccccCCeeEEEe
Q 017897 177 IRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN-----SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVL 250 (364)
Q Consensus 177 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~~-----~~rG~aFV~F~~~~~A~~al~-l~g~~l~g~~i~V~ 250 (364)
..++|||+||++.++++.|...|..||+|.+++|+.... ..+-+|||.|-+..+|++|++ |+|..+.+.++++.
T Consensus 173 ~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K~g 252 (877)
T KOG0151|consen 173 QTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMKLG 252 (877)
T ss_pred cccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeeeec
Confidence 467899999999999999999999999999999987652 247799999999999999998 99999999999999
Q ss_pred eCCC
Q 017897 251 PSKT 254 (364)
Q Consensus 251 ~a~~ 254 (364)
|++.
T Consensus 253 Wgk~ 256 (877)
T KOG0151|consen 253 WGKA 256 (877)
T ss_pred cccc
Confidence 9864
No 140
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.39 E-value=5.3e-07 Score=87.86 Aligned_cols=76 Identities=18% Similarity=0.293 Sum_probs=66.3
Q ss_pred cEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCC--CCCceEEEEEeCCHHHHHHHHHccccccCCeeEEEeeCCC
Q 017897 179 RTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP--NSVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSKT 254 (364)
Q Consensus 179 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~--~~~rG~aFV~F~~~~~A~~al~l~g~~l~g~~i~V~~a~~ 254 (364)
.+|||+|||.+++..+|+++|..||.|....|.... +++.+||||+|.+.+++..||.-+-..+++++|.|+.-+.
T Consensus 289 ~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~Asp~~ig~~kl~Veek~~ 366 (419)
T KOG0116|consen 289 LGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEASPLEIGGRKLNVEEKRP 366 (419)
T ss_pred cceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcCccccCCeeEEEEeccc
Confidence 459999999999999999999999999888776643 4444899999999999999999777789999999987654
No 141
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.36 E-value=1.1e-06 Score=85.74 Aligned_cols=82 Identities=18% Similarity=0.276 Sum_probs=70.5
Q ss_pred CceEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccC--CCCeeEEEEEecCHHHHHHHHhcCCCeeCCeeeEEeecC
Q 017897 274 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALNCSGAVLGSLPIRVSPSK 351 (364)
Q Consensus 274 ~~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~--~~~kg~afV~F~~~e~A~~Al~lng~~~~g~~l~V~~ak 351 (364)
...+|||+|||..++.++|+++|..| |.|....|.... ++..+||||+|.+.+++..||..+-..+++++|.|.-.+
T Consensus 287 ~~~~i~V~nlP~da~~~~l~~~Fk~F-G~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~Asp~~ig~~kl~Veek~ 365 (419)
T KOG0116|consen 287 DGLGIFVKNLPPDATPAELEEVFKQF-GPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEASPLEIGGRKLNVEEKR 365 (419)
T ss_pred cccceEeecCCCCCCHHHHHHHHhhc-ccccccceEEeccCCCcCceEEEEEeecchhhhhhhcCccccCCeeEEEEecc
Confidence 34569999999999999999999997 999988877643 444489999999999999999977889999999999988
Q ss_pred CCCCC
Q 017897 352 TPVRP 356 (364)
Q Consensus 352 ~~~~~ 356 (364)
+..+.
T Consensus 366 ~~~~g 370 (419)
T KOG0116|consen 366 PGFRG 370 (419)
T ss_pred ccccc
Confidence 75443
No 142
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.30 E-value=1.9e-06 Score=86.47 Aligned_cols=92 Identities=18% Similarity=0.291 Sum_probs=77.7
Q ss_pred CCCccccccCceEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccC-----CCCeeEEEEEecCHHHHHHHHh-cCCC
Q 017897 265 PRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY-----QHSTRIAFVEFAMAESAIAALN-CSGA 338 (364)
Q Consensus 265 ~~~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~-----~~~kg~afV~F~~~e~A~~Al~-lng~ 338 (364)
+...+...+..++|||+||++.++++.|...|..| |.|.+++|+--. .+.+.+|||-|-++.+|..|+. |+|.
T Consensus 164 ~gsfDdgDP~TTNlyv~Nlnpsv~E~~ll~tfGrf-gPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~ 242 (877)
T KOG0151|consen 164 PGSFDDGDPQTTNLYVGNLNPSVDENFLLRTFGRF-GPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGI 242 (877)
T ss_pred CCcCCCCCCcccceeeecCCccccHHHHHHHhccc-CcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcce
Confidence 34444445667899999999999999999999997 999999987432 2456699999999999999999 9999
Q ss_pred eeCCeeeEEeecCCCCCCC
Q 017897 339 VLGSLPIRVSPSKTPVRPR 357 (364)
Q Consensus 339 ~~~g~~l~V~~ak~~~~~~ 357 (364)
.+.+..+++.|++..+-+.
T Consensus 243 iv~~~e~K~gWgk~V~ip~ 261 (877)
T KOG0151|consen 243 IVMEYEMKLGWGKAVPIPN 261 (877)
T ss_pred eeeeeeeeeccccccccCC
Confidence 9999999999997654443
No 143
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.30 E-value=5.7e-06 Score=64.43 Aligned_cols=77 Identities=22% Similarity=0.243 Sum_probs=65.5
Q ss_pred eEEEEeCCCCCCCHHHHHHHhhhc-CCceeEEEEeccC--CCCeeEEEEEecCHHHHHHHHh-cCCCeeC----CeeeEE
Q 017897 276 RTIYCTNIDKKVTQGDIKLFFESV-CGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVLG----SLPIRV 347 (364)
Q Consensus 276 ~~l~V~nLp~~~tee~L~~~F~~~-~G~I~~v~i~~d~--~~~kg~afV~F~~~e~A~~Al~-lng~~~~----g~~l~V 347 (364)
+||.|+|||...+.++|.+++... .|....+.++.|. +...|||||.|.+++.|.+-.. ++|..+. .+...|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 699999999999999999998764 4677777888875 5689999999999999999999 9998774 567888
Q ss_pred eecCC
Q 017897 348 SPSKT 352 (364)
Q Consensus 348 ~~ak~ 352 (364)
.||+-
T Consensus 82 ~yAri 86 (97)
T PF04059_consen 82 SYARI 86 (97)
T ss_pred ehhHh
Confidence 88864
No 144
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.30 E-value=1.5e-06 Score=78.64 Aligned_cols=82 Identities=30% Similarity=0.469 Sum_probs=75.7
Q ss_pred cccCceEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccC--CCCeeEEEEEecCHHHHHHHHhcCCCeeCCeeeEEe
Q 017897 271 REMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALNCSGAVLGSLPIRVS 348 (364)
Q Consensus 271 ~~~~~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~--~~~kg~afV~F~~~e~A~~Al~lng~~~~g~~l~V~ 348 (364)
.......+||+|+++.++.+++...|+. ||.|..+.++.|. ++++||+||+|.+.+.+..|+.|+|..|.|+.+.|+
T Consensus 97 ~~~d~~sv~v~nvd~~~t~~~~e~hf~~-Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~l~gs~i~~~~i~vt 175 (231)
T KOG4209|consen 97 KEVDAPSVWVGNVDFLVTLTKIELHFES-CGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYKLDGSEIPGPAIEVT 175 (231)
T ss_pred hccCCceEEEeccccccccchhhheeec-cCCccceeeeccccCCCcceeEEEecccHhhhHHHhhcCCcccccccceee
Confidence 3567789999999999999999999998 7999999999886 579999999999999999999999999999999999
Q ss_pred ecCCC
Q 017897 349 PSKTP 353 (364)
Q Consensus 349 ~ak~~ 353 (364)
+.+..
T Consensus 176 ~~r~~ 180 (231)
T KOG4209|consen 176 LKRTN 180 (231)
T ss_pred eeeee
Confidence 98765
No 145
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.28 E-value=6.8e-07 Score=87.68 Aligned_cols=77 Identities=23% Similarity=0.356 Sum_probs=67.9
Q ss_pred CCccccccCceEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccCCCCeeEEEEEecCHHHHHHHHh-cCCCeeCCee
Q 017897 266 RSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLP 344 (364)
Q Consensus 266 ~~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~e~A~~Al~-lng~~~~g~~ 344 (364)
....+.....++|+|-|||..+++++|..+|+.| |+|..|+.-+. .+|..||+|.+.-+|+.|++ |++.++.|++
T Consensus 66 ~np~~~~~~~~~L~v~nl~~~Vsn~~L~~~f~~y-Geir~ir~t~~---~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~ 141 (549)
T KOG4660|consen 66 DNPSEKDMNQGTLVVFNLPRSVSNDTLLRIFGAY-GEIREIRETPN---KRGIVFVEFYDVRDAERALKALNRREIAGKR 141 (549)
T ss_pred CCCCcccCccceEEEEecCCcCCHHHHHHHHHhh-cchhhhhcccc---cCceEEEEEeehHhHHHHHHHHHHHHhhhhh
Confidence 3344456778999999999999999999999997 99999766554 56799999999999999999 9999999999
Q ss_pred eE
Q 017897 345 IR 346 (364)
Q Consensus 345 l~ 346 (364)
|+
T Consensus 142 ~k 143 (549)
T KOG4660|consen 142 IK 143 (549)
T ss_pred hc
Confidence 98
No 146
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.28 E-value=2e-06 Score=86.08 Aligned_cols=172 Identities=15% Similarity=0.033 Sum_probs=125.2
Q ss_pred CCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCC-CC-CceEEEEEeCCHHHHHHHHHccccccCCeeEEEeeCCC
Q 017897 177 IRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP-NS-VLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSKT 254 (364)
Q Consensus 177 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~-~~-~rG~aFV~F~~~~~A~~al~l~g~~l~g~~i~V~~a~~ 254 (364)
+.+.+-+.+.+...+..+++++|-.- .|.++.|..+. +. ..|-++|.|....++.+|++-|...+-.|.+.|.++-.
T Consensus 310 d~~y~~~~gm~fn~~~nd~rkfF~g~-~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~rn~~~~~~R~~q~~P~g~ 388 (944)
T KOG4307|consen 310 DKYYNNYKGMEFNNDFNDGRKFFPGR-NAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFTRNPSDDVNRPFQTGPPGN 388 (944)
T ss_pred hhheeeecccccccccchhhhhcCcc-cccccchhhhhcCCCcCCceEEEecCcchHHHHHhcCchhhhhcceeecCCCc
Confidence 34556678999999999999998732 24444444443 22 26899999999999999999888888888888876532
Q ss_pred CC--------CCC----------CCCCCCCCcc-------ccccCceEEEEeCCCCCCCHHHHHHHhhhcCCceeE-EEE
Q 017897 255 AI--------APV----------NPTFLPRSED-------EREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQR-LRL 308 (364)
Q Consensus 255 ~~--------~~~----------~~~~~~~~~~-------~~~~~~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~-v~i 308 (364)
-. ... ++...++... -.......|||..||..+++.++.++|... -.|++ |.|
T Consensus 389 ~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~-~~Ved~I~l 467 (944)
T KOG4307|consen 389 LGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGA-AAVEDFIEL 467 (944)
T ss_pred cccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhh-hhhhheeEe
Confidence 10 000 0111111111 112346799999999999999999999986 56665 666
Q ss_pred eccC-CCCeeEEEEEecCHHHHHHHHh-cCCCeeCCeeeEEeec
Q 017897 309 LGDY-QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSPS 350 (364)
Q Consensus 309 ~~d~-~~~kg~afV~F~~~e~A~~Al~-lng~~~~g~~l~V~~a 350 (364)
-+.. ++.++.|||.|...+++.+|+. -+.+.++.+.|+|...
T Consensus 468 t~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si 511 (944)
T KOG4307|consen 468 TRLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSI 511 (944)
T ss_pred ccCCcccccchhhheeccccccchhhhcccccccCceEEEeech
Confidence 6654 6788899999999999999999 7788889999999764
No 147
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=98.27 E-value=6.7e-08 Score=91.41 Aligned_cols=149 Identities=21% Similarity=0.281 Sum_probs=116.9
Q ss_pred cEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-ccccc-cCCeeEEEeeCCCCC
Q 017897 179 RTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTM-LGFYPVRVLPSKTAI 256 (364)
Q Consensus 179 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~~~~rG~aFV~F~~~~~A~~al~-l~g~~-l~g~~i~V~~a~~~~ 256 (364)
..+|++||.+.++..+|+.+|...---.+-.++.. -||+||.+.+...|.+|++ ++|+. +.|+++.|..+-+
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~k----~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~-- 75 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLVK----SGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVP-- 75 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceeee----cceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhh--
Confidence 36899999999999999999985411111111211 3899999999999999998 88865 8899999988632
Q ss_pred CCCCCCCCCCCccccccCceEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEec-cCCCCeeEEEEEecCHHHHHHHHh-
Q 017897 257 APVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLG-DYQHSTRIAFVEFAMAESAIAALN- 334 (364)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~-d~~~~kg~afV~F~~~e~A~~Al~- 334 (364)
...+ .+.+-|+|+|+..-++-|..+...| |.+..|.... +.. .-..-|+|.+.+.+..||.
T Consensus 76 ---------kkqr-----srk~Qirnippql~wevld~Ll~qy-g~ve~~eqvnt~~e--tavvnvty~~~~~~~~ai~k 138 (584)
T KOG2193|consen 76 ---------KKQR-----SRKIQIRNIPPQLQWEVLDSLLAQY-GTVENCEQVNTDSE--TAVVNVTYSAQQQHRQAIHK 138 (584)
T ss_pred ---------HHHH-----hhhhhHhcCCHHHHHHHHHHHHhcc-CCHhHhhhhccchH--HHHHHHHHHHHHHHHHHHHh
Confidence 2222 3568999999999999999999997 9999987643 321 1234578999999999999
Q ss_pred cCCCeeCCeeeEEeec
Q 017897 335 CSGAVLGSLPIRVSPS 350 (364)
Q Consensus 335 lng~~~~g~~l~V~~a 350 (364)
++|..+....++|.|-
T Consensus 139 l~g~Q~en~~~k~~Yi 154 (584)
T KOG2193|consen 139 LNGPQLENQHLKVGYI 154 (584)
T ss_pred hcchHhhhhhhhcccC
Confidence 9999999999999984
No 148
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.25 E-value=2.9e-06 Score=87.31 Aligned_cols=151 Identities=11% Similarity=0.109 Sum_probs=114.1
Q ss_pred hcccCCccccccHHHHHHHHhccCCcceEEecCCCCCCcccccCCCCCCCCCeEEeeecccCCCCCccccccchhhhhhc
Q 017897 76 ERKMGESFKDCEMRDLVDMLSKLNPMAAEFVPPSLANGQIFNFNPAFFGPNGFGYTNNFIMHTDGTANTNGHTTTRRKRN 155 (364)
Q Consensus 76 ~~~~g~~~~~~~~~~L~~~Fs~~G~i~~v~v~~d~~t~~s~~~~~~~~~~~GfaFV~f~~~~~~~~~~~~a~~~~a~~~~ 155 (364)
-.+.|.|.-+.++.+|+..|..+|.|.+|.+.+-+...-+ -||||.|.+... +-. |.-.+
T Consensus 374 TLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~es-----------a~~f~~~~n~dm-------tp~--ak~e~ 433 (975)
T KOG0112|consen 374 TLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTES-----------AYAFVSLLNTDM-------TPS--AKFEE 433 (975)
T ss_pred hhhhcCcccchhhhhhhhhhhhhccccccccccCCCCccc-----------chhhhhhhcccc-------Ccc--cchhh
Confidence 4456999999999999999999999999988776544445 799999988333 333 33333
Q ss_pred CCC---CCccccccCCcccccCCCCCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHH
Q 017897 156 GYS---QGKRRMNCRTSNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGAR 232 (364)
Q Consensus 156 ~~~---~g~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~~~~rG~aFV~F~~~~~A~ 232 (364)
... .|- +++...+......+.+++++|++.+....|...|..||.|..|.+-. +. -||||.|++...+.
T Consensus 434 s~~~I~~g~----~r~glG~~kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~h--gq--~yayi~yes~~~aq 505 (975)
T KOG0112|consen 434 SGPLIGNGT----HRIGLGQPKSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRH--GQ--PYAYIQYESPPAAQ 505 (975)
T ss_pred cCCccccCc----ccccccccccccceeeccCCCCCCChHHHHHHHhhccCcceeeeccc--CC--cceeeecccCccch
Confidence 222 221 22222222344567899999999999999999999999998866533 32 49999999999999
Q ss_pred HHHH-ccccccCC--eeEEEeeCCC
Q 017897 233 AALS-LAGTMLGF--YPVRVLPSKT 254 (364)
Q Consensus 233 ~al~-l~g~~l~g--~~i~V~~a~~ 254 (364)
+|++ +-|..|+| +++.|.++..
T Consensus 506 ~a~~~~rgap~G~P~~r~rvdla~~ 530 (975)
T KOG0112|consen 506 AATHDMRGAPLGGPPRRLRVDLASP 530 (975)
T ss_pred hhHHHHhcCcCCCCCcccccccccC
Confidence 9998 99999986 6799988765
No 149
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=98.21 E-value=3.7e-07 Score=93.36 Aligned_cols=140 Identities=14% Similarity=0.031 Sum_probs=111.3
Q ss_pred cccCCccccccHHHHHHHHhccCCcceEEecCCCCCCcccccCCCCCCCCCeEEeeecccCCCCCccccccchhhhhhcC
Q 017897 77 RKMGESFKDCEMRDLVDMLSKLNPMAAEFVPPSLANGQIFNFNPAFFGPNGFGYTNNFIMHTDGTANTNGHTTTRRKRNG 156 (364)
Q Consensus 77 ~~~g~~~~~~~~~~L~~~Fs~~G~i~~v~v~~d~~t~~s~~~~~~~~~~~GfaFV~f~~~~~~~~~~~~a~~~~a~~~~~ 156 (364)
.++-.|+..+.+.+|.+.|+.+|-|..+.+.-...+++- + |+||+.|.. +. ++.+ |+....
T Consensus 670 ~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~-r---------G~~Y~~F~~-~~------~~~a--aV~f~d 730 (881)
T KOG0128|consen 670 IFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRF-R---------GKAYVEFLK-PE------HAGA--AVAFRD 730 (881)
T ss_pred HHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhcccc-c---------cceeeEeec-CC------chhh--hhhhhh
Confidence 345788999999999999999999999888866666665 6 999999999 55 4666 554321
Q ss_pred CCCCccccccCCcccccCCCCCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCC-CCCceEEEEEeCCHHHHHHHH
Q 017897 157 YSQGKRRMNCRTSNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP-NSVLRFAFVEFTDEEGARAAL 235 (364)
Q Consensus 157 ~~~g~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~-~~~rG~aFV~F~~~~~A~~al 235 (364)
.. ......|||.|+|+..|.+.|+.++..+|.+.+.+++..+ ++++|.|||.|.++.++..++
T Consensus 731 ~~----------------~~gK~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~ 794 (881)
T KOG0128|consen 731 SC----------------FFGKISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASRKV 794 (881)
T ss_pred hh----------------hhhhhhhheeCCCCCCchHHHHhhccccCCccccchhhhhccccccceeccCCCcchhhhhc
Confidence 11 0114679999999999999999999999999999988776 578999999999999999998
Q ss_pred H-ccccccCCeeEEEee
Q 017897 236 S-LAGTMLGFYPVRVLP 251 (364)
Q Consensus 236 ~-l~g~~l~g~~i~V~~ 251 (364)
. .....+.-..+.|..
T Consensus 795 ~s~d~~~~rE~~~~v~v 811 (881)
T KOG0128|consen 795 ASVDVAGKRENNGEVQV 811 (881)
T ss_pred ccchhhhhhhcCccccc
Confidence 6 666666555455544
No 150
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.20 E-value=1.1e-05 Score=62.93 Aligned_cols=75 Identities=21% Similarity=0.208 Sum_probs=62.4
Q ss_pred cEEEEeCCCCCCcHHHHHHHhhcC--CCeeEEEEecCCC--CCceEEEEEeCCHHHHHHHHH-ccccccC----CeeEEE
Q 017897 179 RTVYVSDIDQQVTEEQLATLFLTC--GQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALS-LAGTMLG----FYPVRV 249 (364)
Q Consensus 179 ~~lfV~nLp~~~te~~L~~~F~~~--G~i~~~~i~~d~~--~~rG~aFV~F~~~~~A~~al~-l~g~~l~----g~~i~V 249 (364)
+||.|+|||...|.++|.+++... |...-+.++.|.. .+.|||||.|.+++.|.+..+ ++|..+. .+.+.|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 689999999999999999888743 6667777888864 369999999999999999998 9998875 456777
Q ss_pred eeCC
Q 017897 250 LPSK 253 (364)
Q Consensus 250 ~~a~ 253 (364)
.||+
T Consensus 82 ~yAr 85 (97)
T PF04059_consen 82 SYAR 85 (97)
T ss_pred ehhH
Confidence 7764
No 151
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.72 E-value=0.00012 Score=58.25 Aligned_cols=68 Identities=19% Similarity=0.263 Sum_probs=42.5
Q ss_pred eEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccCCCCeeEEEEEecCHHHHHHHHh-c--C---CCeeCCeeeEEe
Q 017897 276 RTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-C--S---GAVLGSLPIRVS 348 (364)
Q Consensus 276 ~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~e~A~~Al~-l--n---g~~~~g~~l~V~ 348 (364)
..|+|.+++..++.++|++.|++| |.|..|.+.+... .|+|.|.+.++|..|+. + . +..+.+..+.+.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~-g~V~yVD~~~G~~----~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~ 75 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQF-GEVAYVDFSRGDT----EGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLE 75 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS---EEEEE--TT-S----EEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE
T ss_pred eEEEEecCCCCcCHHHHHHHHHhc-CCcceEEecCCCC----EEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEE
Confidence 578999999999999999999997 9999999887543 79999999999999997 3 3 345566555543
No 152
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.68 E-value=0.00019 Score=53.72 Aligned_cols=67 Identities=22% Similarity=0.293 Sum_probs=46.0
Q ss_pred eEEEEeCCCCCCCHHH----HHHHhhhcCC-ceeEEEEeccCCCCeeEEEEEecCHHHHHHHHh-cCCCeeCCeeeEEee
Q 017897 276 RTIYCTNIDKKVTQGD----IKLFFESVCG-EVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSP 349 (364)
Q Consensus 276 ~~l~V~nLp~~~tee~----L~~~F~~~~G-~I~~v~i~~d~~~~kg~afV~F~~~e~A~~Al~-lng~~~~g~~l~V~~ 349 (364)
..|+|.|||...+-.. |++++.. || .|.+|. .+-|+|.|.+++.|..|.. |+|..+.|+.|.|+|
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdN-CGGkVl~v~--------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~ 73 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDN-CGGKVLSVS--------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSF 73 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHT-TT--EEE----------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEES
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhc-cCCEEEEEe--------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEEE
Confidence 5799999999888755 5566666 45 676652 2479999999999999999 999999999999999
Q ss_pred cC
Q 017897 350 SK 351 (364)
Q Consensus 350 ak 351 (364)
..
T Consensus 74 ~~ 75 (90)
T PF11608_consen 74 SP 75 (90)
T ss_dssp S-
T ss_pred cC
Confidence 73
No 153
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.58 E-value=0.00032 Score=55.73 Aligned_cols=54 Identities=20% Similarity=0.308 Sum_probs=36.0
Q ss_pred cEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH
Q 017897 179 RTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS 236 (364)
Q Consensus 179 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~~~~rG~aFV~F~~~~~A~~al~ 236 (364)
+.|.|.+++..++.++|++.|+.||.|..|.+.... .-|||.|.+++.|++|++
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~----~~g~VRf~~~~~A~~a~~ 55 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGD----TEGYVRFKTPEAAQKALE 55 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-----SEEEEEESS---HHHHHH
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCC----CEEEEEECCcchHHHHHH
Confidence 468899999999999999999999999988887643 379999999999999996
No 154
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.53 E-value=0.00023 Score=53.20 Aligned_cols=66 Identities=24% Similarity=0.264 Sum_probs=46.6
Q ss_pred cEEEEeCCCCCCcHHH----HHHHhhcCC-CeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-ccccccCCeeEEEeeC
Q 017897 179 RTVYVSDIDQQVTEEQ----LATLFLTCG-QVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPS 252 (364)
Q Consensus 179 ~~lfV~nLp~~~te~~----L~~~F~~~G-~i~~~~i~~d~~~~rG~aFV~F~~~~~A~~al~-l~g~~l~g~~i~V~~a 252 (364)
..|+|.|||.+.+... |+.++..+| .|.++. .+.|+|.|.+++.|.+|.+ |+|..+-|+.|.|.+.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~--------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~ 74 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS--------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFS 74 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE----------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe--------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEc
Confidence 4699999999888755 556777886 676652 2689999999999999998 9999999999999986
No 155
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.40 E-value=0.0005 Score=47.45 Aligned_cols=52 Identities=19% Similarity=0.392 Sum_probs=42.0
Q ss_pred cEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHH
Q 017897 179 RTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAAL 235 (364)
Q Consensus 179 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~~~~rG~aFV~F~~~~~A~~al 235 (364)
+.|-|.|.+++..+ .+..+|..||+|..+.+.... -+.||.|.+..+|++||
T Consensus 2 ~wI~V~Gf~~~~~~-~vl~~F~~fGeI~~~~~~~~~----~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAE-EVLEHFASFGEIVDIYVPEST----NWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHH-HHHHHHHhcCCEEEEEcCCCC----cEEEEEECCHHHHHhhC
Confidence 56778888876664 555599999999998887333 39999999999999986
No 156
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.27 E-value=0.0015 Score=51.31 Aligned_cols=75 Identities=20% Similarity=0.223 Sum_probs=52.9
Q ss_pred CcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEe-cC-------C-CCCceEEEEEeCCHHHHHHHHHccccccCCe-eE
Q 017897 178 RRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRIC-GD-------P-NSVLRFAFVEFTDEEGARAALSLAGTMLGFY-PV 247 (364)
Q Consensus 178 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~-~d-------~-~~~rG~aFV~F~~~~~A~~al~l~g~~l~g~-~i 247 (364)
..-|.|-+.|+. ....+.+.|++||.|++..-. ++ + .....+-.|+|.++.+|.+||..||..+.|. .+
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~NG~i~~g~~mv 84 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQKNGTIFSGSLMV 84 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTTTTEEETTCEEE
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHhCCeEEcCcEEE
Confidence 456888899887 667888999999999887511 11 1 1124599999999999999999999999885 55
Q ss_pred EEeeCC
Q 017897 248 RVLPSK 253 (364)
Q Consensus 248 ~V~~a~ 253 (364)
-|.|.+
T Consensus 85 GV~~~~ 90 (100)
T PF05172_consen 85 GVKPCD 90 (100)
T ss_dssp EEEE-H
T ss_pred EEEEcH
Confidence 577753
No 157
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=97.27 E-value=0.00062 Score=61.20 Aligned_cols=99 Identities=26% Similarity=0.307 Sum_probs=81.0
Q ss_pred HHHHHHH-ccccccCCeeEEEeeCCCCCCCCCCCCCCCCccccccCceEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEE
Q 017897 230 GARAALS-LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRL 308 (364)
Q Consensus 230 ~A~~al~-l~g~~l~g~~i~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i 308 (364)
-|+.|-. |++....|+.++|.++.. ..|||.||...++.+.|..-|+.| |.|....+
T Consensus 6 ~ae~ak~eLd~~~~~~~~lr~rfa~~---------------------a~l~V~nl~~~~sndll~~~f~~f-g~~e~av~ 63 (275)
T KOG0115|consen 6 LAEIAKRELDGRFPKGRSLRVRFAMH---------------------AELYVVNLMQGASNDLLEQAFRRF-GPIERAVA 63 (275)
T ss_pred HHHHHHHhcCCCCCCCCceEEEeecc---------------------ceEEEEecchhhhhHHHHHhhhhc-Cccchhee
Confidence 4666665 999999999999999731 689999999999999999999997 99998877
Q ss_pred eccC-CCCeeEEEEEecCHHHHHHHHh-cC--CC--eeCCeeeEEeec
Q 017897 309 LGDY-QHSTRIAFVEFAMAESAIAALN-CS--GA--VLGSLPIRVSPS 350 (364)
Q Consensus 309 ~~d~-~~~kg~afV~F~~~e~A~~Al~-ln--g~--~~~g~~l~V~~a 350 (364)
+.|. ++..+-++|.|...-.|.+|+. ++ |. ...+++.-|...
T Consensus 64 ~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP~ 111 (275)
T KOG0115|consen 64 KVDDRGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEPM 111 (275)
T ss_pred eecccccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCChh
Confidence 7775 7888899999999999999998 53 22 445556655554
No 158
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.25 E-value=0.00036 Score=64.88 Aligned_cols=75 Identities=23% Similarity=0.375 Sum_probs=60.2
Q ss_pred EEEEeCCCCCCcHHH----H--HHHhhcCCCeeEEEEecCC---CCCceEE--EEEeCCHHHHHHHHH-ccccccCCeeE
Q 017897 180 TVYVSDIDQQVTEEQ----L--ATLFLTCGQVVDCRICGDP---NSVLRFA--FVEFTDEEGARAALS-LAGTMLGFYPV 247 (364)
Q Consensus 180 ~lfV~nLp~~~te~~----L--~~~F~~~G~i~~~~i~~d~---~~~rG~a--FV~F~~~~~A~~al~-l~g~~l~g~~i 247 (364)
-+||-+||+.+-.++ | .++|.+||.|..+.+-+.. ++..+.+ ||+|.+.++|.+||. .+|..+.||-|
T Consensus 116 LvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr~l 195 (480)
T COG5175 116 LVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGRVL 195 (480)
T ss_pred eeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCceE
Confidence 389999998887776 2 3799999999988775533 1213333 999999999999997 99999999999
Q ss_pred EEeeCCC
Q 017897 248 RVLPSKT 254 (364)
Q Consensus 248 ~V~~a~~ 254 (364)
+..+..+
T Consensus 196 katYGTT 202 (480)
T COG5175 196 KATYGTT 202 (480)
T ss_pred eeecCch
Confidence 9988643
No 159
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.22 E-value=0.00069 Score=63.03 Aligned_cols=77 Identities=14% Similarity=0.356 Sum_probs=62.6
Q ss_pred eEEEEeCCCCCCCHHH----H--HHHhhhcCCceeEEEEeccC---CCCee--EEEEEecCHHHHHHHHh-cCCCeeCCe
Q 017897 276 RTIYCTNIDKKVTQGD----I--KLFFESVCGEVQRLRLLGDY---QHSTR--IAFVEFAMAESAIAALN-CSGAVLGSL 343 (364)
Q Consensus 276 ~~l~V~nLp~~~tee~----L--~~~F~~~~G~I~~v~i~~d~---~~~kg--~afV~F~~~e~A~~Al~-lng~~~~g~ 343 (364)
..+||-+||+.+..|+ | .++|.+| |.|..|.|-+.- +.-.+ -.||+|.+.++|..||. .+|..++||
T Consensus 115 NLvYVigi~pkva~Ee~~~vLk~~eyFGQy-GkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr 193 (480)
T COG5175 115 NLVYVIGIPPKVADEEVAPVLKRHEYFGQY-GKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGR 193 (480)
T ss_pred ceeEEecCCCCCCcccccccccchhhhhhc-cceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCc
Confidence 5889999999887776 2 3789997 999998886642 11122 24999999999999999 999999999
Q ss_pred eeEEeecCCC
Q 017897 344 PIRVSPSKTP 353 (364)
Q Consensus 344 ~l~V~~ak~~ 353 (364)
.|+..|..++
T Consensus 194 ~lkatYGTTK 203 (480)
T COG5175 194 VLKATYGTTK 203 (480)
T ss_pred eEeeecCchH
Confidence 9999998654
No 160
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=97.21 E-value=2.4e-05 Score=74.45 Aligned_cols=145 Identities=19% Similarity=0.270 Sum_probs=107.8
Q ss_pred hcccCCccccccHHHHHHHHhccC-CcceEEecCCCCCCcccccCCCCCCCCCeEEeeecccCCCCCccccccchhhhhh
Q 017897 76 ERKMGESFKDCEMRDLVDMLSKLN-PMAAEFVPPSLANGQIFNFNPAFFGPNGFGYTNNFIMHTDGTANTNGHTTTRRKR 154 (364)
Q Consensus 76 ~~~~g~~~~~~~~~~L~~~Fs~~G-~i~~v~v~~d~~t~~s~~~~~~~~~~~GfaFV~f~~~~~~~~~~~~a~~~~a~~~ 154 (364)
+.++|.|+-..+..||..+|..-- +..--+++ ++ ||+||++.+ .. .|.+ |++.
T Consensus 3 klyignL~p~~~psdl~svfg~ak~~~~g~fl~------k~-----------gyafvd~pd-q~------wa~k--aie~ 56 (584)
T KOG2193|consen 3 KLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV------KS-----------GYAFVDCPD-QQ------WANK--AIET 56 (584)
T ss_pred cccccccCCCCChHHHHHHhccccCCCCcceee------ec-----------ceeeccCCc-hh------hhhh--hHHh
Confidence 456788999999999999997651 11111111 13 999999999 44 4777 8999
Q ss_pred cCCC---CCccccccCCcccccCCCCCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEe-cCCCCCceEEEEEeCCHHH
Q 017897 155 NGYS---QGKRRMNCRTSNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRIC-GDPNSVLRFAFVEFTDEEG 230 (364)
Q Consensus 155 ~~~~---~g~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~-~d~~~~rG~aFV~F~~~~~ 230 (364)
++.. +|++ ..+...-......+++-|.|+|+...++-|..++..||.++.|... .|+.+ -.-=|+|...+.
T Consensus 57 ~sgk~elqGkr---~e~~~sv~kkqrsrk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~et--avvnvty~~~~~ 131 (584)
T KOG2193|consen 57 LSGKVELQGKR---QEVEHSVPKKQRSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSET--AVVNVTYSAQQQ 131 (584)
T ss_pred hchhhhhcCce---eeccchhhHHHHhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchHH--HHHHHHHHHHHH
Confidence 8887 7777 3333333333345779999999999999999999999999988553 34432 233467899999
Q ss_pred HHHHHH-ccccccCCeeEEEee
Q 017897 231 ARAALS-LAGTMLGFYPVRVLP 251 (364)
Q Consensus 231 A~~al~-l~g~~l~g~~i~V~~ 251 (364)
+..||. ++|..+....++|.|
T Consensus 132 ~~~ai~kl~g~Q~en~~~k~~Y 153 (584)
T KOG2193|consen 132 HRQAIHKLNGPQLENQHLKVGY 153 (584)
T ss_pred HHHHHHhhcchHhhhhhhhccc
Confidence 999997 999999888888876
No 161
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.13 E-value=0.0023 Score=50.14 Aligned_cols=77 Identities=14% Similarity=0.180 Sum_probs=53.4
Q ss_pred ceEEEEeCCCCCCCHHHHHHHhhhcCCceeEEE-Eecc-------C-CCCeeEEEEEecCHHHHHHHHhcCCCeeCCe-e
Q 017897 275 SRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLR-LLGD-------Y-QHSTRIAFVEFAMAESAIAALNCSGAVLGSL-P 344 (364)
Q Consensus 275 ~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~-i~~d-------~-~~~kg~afV~F~~~e~A~~Al~lng~~~~g~-~ 344 (364)
..-|.|-+.|+. ....|.+.|++| |.|.+.. +.++ + .....|-.|+|.++.+|.+||.-||..++|. .
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~-G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~NG~i~~g~~m 83 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSF-GTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQKNGTIFSGSLM 83 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCC-S-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTTTTEEETTCEE
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhc-ceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHhCCeEEcCcEE
Confidence 356888899988 466888999996 9998875 1111 0 0123499999999999999999999999885 6
Q ss_pred eEEeecCCC
Q 017897 345 IRVSPSKTP 353 (364)
Q Consensus 345 l~V~~ak~~ 353 (364)
+-|.|.++.
T Consensus 84 vGV~~~~~~ 92 (100)
T PF05172_consen 84 VGVKPCDPA 92 (100)
T ss_dssp EEEEE-HHH
T ss_pred EEEEEcHHh
Confidence 668887543
No 162
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.07 E-value=0.00055 Score=64.35 Aligned_cols=82 Identities=22% Similarity=0.308 Sum_probs=70.3
Q ss_pred ccCceEEEEeCCCCCCCHHHHHHHhhhcCCcee--------EEEEeccC--CCCeeEEEEEecCHHHHHHHHh-cCCCee
Q 017897 272 EMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQ--------RLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVL 340 (364)
Q Consensus 272 ~~~~~~l~V~nLp~~~tee~L~~~F~~~~G~I~--------~v~i~~d~--~~~kg~afV~F~~~e~A~~Al~-lng~~~ 340 (364)
.....+|||.+||..+++.+|..+|.+ +|.|. .|.|.+++ +.+++-|.|.|++...|+.|+. +++..|
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~q-cg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf 141 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQ-CGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDF 141 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhh-cceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccc
Confidence 345679999999999999999999998 58774 34455554 5789999999999999999999 999999
Q ss_pred CCeeeEEeecCCCC
Q 017897 341 GSLPIRVSPSKTPV 354 (364)
Q Consensus 341 ~g~~l~V~~ak~~~ 354 (364)
.+..|+|.++....
T Consensus 142 ~gn~ikvs~a~~r~ 155 (351)
T KOG1995|consen 142 CGNTIKVSLAERRT 155 (351)
T ss_pred cCCCchhhhhhhcc
Confidence 99999999987654
No 163
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.02 E-value=0.00067 Score=63.82 Aligned_cols=77 Identities=26% Similarity=0.359 Sum_probs=66.7
Q ss_pred CCcEEEEeCCCCCCcHHHHHHHhhcCCCee--------EEEEecCCCC--CceEEEEEeCCHHHHHHHHH-ccccccCCe
Q 017897 177 IRRTVYVSDIDQQVTEEQLATLFLTCGQVV--------DCRICGDPNS--VLRFAFVEFTDEEGARAALS-LAGTMLGFY 245 (364)
Q Consensus 177 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~--------~~~i~~d~~~--~rG~aFV~F~~~~~A~~al~-l~g~~l~g~ 245 (364)
...+|||-+||..+++++|.++|.++|.|. .+.|.+|+.+ +||=|.|+|.+...|+.|+. +++..+.|.
T Consensus 65 ~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~gn 144 (351)
T KOG1995|consen 65 DNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCGN 144 (351)
T ss_pred ccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccCC
Confidence 457899999999999999999999999873 2345556544 69999999999999999999 999999999
Q ss_pred eEEEeeCC
Q 017897 246 PVRVLPSK 253 (364)
Q Consensus 246 ~i~V~~a~ 253 (364)
+|+|..+.
T Consensus 145 ~ikvs~a~ 152 (351)
T KOG1995|consen 145 TIKVSLAE 152 (351)
T ss_pred Cchhhhhh
Confidence 99998764
No 164
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.92 E-value=0.0024 Score=58.45 Aligned_cols=76 Identities=22% Similarity=0.272 Sum_probs=58.3
Q ss_pred ceEEEEeCC--CCCCC---HHHHHHHhhhcCCceeEEEEeccCCC---CeeEEEEEecCHHHHHHHHh-cCCCeeCCeee
Q 017897 275 SRTIYCTNI--DKKVT---QGDIKLFFESVCGEVQRLRLLGDYQH---STRIAFVEFAMAESAIAALN-CSGAVLGSLPI 345 (364)
Q Consensus 275 ~~~l~V~nL--p~~~t---ee~L~~~F~~~~G~I~~v~i~~d~~~---~kg~afV~F~~~e~A~~Al~-lng~~~~g~~l 345 (364)
.+.|.++|+ +..++ ++++++.+++| |.|..|.|...++. ..---||+|...++|.+|+- |||.+|+||.+
T Consensus 281 tkvlllrnmVg~gevd~elede~keEceKy-g~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v 359 (378)
T KOG1996|consen 281 TKVLLLRNMVGAGEVDEELEDETKEECEKY-GKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVV 359 (378)
T ss_pred hHHHHhhhhcCcccccHHHHHHHHHHHHhh-cceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceee
Confidence 344555655 22333 46788999996 99999988876532 22247999999999999999 99999999999
Q ss_pred EEeecC
Q 017897 346 RVSPSK 351 (364)
Q Consensus 346 ~V~~ak 351 (364)
+..|..
T Consensus 360 ~A~Fyn 365 (378)
T KOG1996|consen 360 SACFYN 365 (378)
T ss_pred eheecc
Confidence 988854
No 165
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=96.89 E-value=0.0029 Score=43.63 Aligned_cols=52 Identities=17% Similarity=0.289 Sum_probs=41.3
Q ss_pred eEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccCCCCeeEEEEEecCHHHHHHHH
Q 017897 276 RTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAAL 333 (364)
Q Consensus 276 ~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~e~A~~Al 333 (364)
+.|-|.+.+....+ .+...|..| |+|..+.+... ..+.+|+|.++.+|++||
T Consensus 2 ~wI~V~Gf~~~~~~-~vl~~F~~f-GeI~~~~~~~~----~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAE-EVLEHFASF-GEIVDIYVPES----TNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHH-HHHHHHHhc-CCEEEEEcCCC----CcEEEEEECCHHHHHhhC
Confidence 56888899877665 455577775 99999888632 238999999999999985
No 166
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.75 E-value=0.0057 Score=50.94 Aligned_cols=55 Identities=27% Similarity=0.453 Sum_probs=45.8
Q ss_pred HHHHHhhhcCCceeEEEEeccCCCCeeEEEEEecCHHHHHHHHhcCCCeeCCeeeEEeecCC
Q 017897 291 DIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALNCSGAVLGSLPIRVSPSKT 352 (364)
Q Consensus 291 ~L~~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~e~A~~Al~lng~~~~g~~l~V~~ak~ 352 (364)
+|.+.|..| |++.-+++..+ .-.|+|.+-++|.+|+.++|.+++|+.|+|+...+
T Consensus 52 ~ll~~~~~~-GevvLvRfv~~------~mwVTF~dg~sALaals~dg~~v~g~~l~i~LKtp 106 (146)
T PF08952_consen 52 ELLQKFAQY-GEVVLVRFVGD------TMWVTFRDGQSALAALSLDGIQVNGRTLKIRLKTP 106 (146)
T ss_dssp HHHHHHHCC-S-ECEEEEETT------CEEEEESSCHHHHHHHHGCCSEETTEEEEEEE---
T ss_pred HHHHHHHhC-CceEEEEEeCC------eEEEEECccHHHHHHHccCCcEECCEEEEEEeCCc
Confidence 677888886 99999888776 36899999999999999999999999999998543
No 167
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=96.71 E-value=0.0016 Score=62.49 Aligned_cols=68 Identities=24% Similarity=0.299 Sum_probs=56.6
Q ss_pred ccCceEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEecc---C----CC--------CeeEEEEEecCHHHHHHHHh-c
Q 017897 272 EMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGD---Y----QH--------STRIAFVEFAMAESAIAALN-C 335 (364)
Q Consensus 272 ~~~~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d---~----~~--------~kg~afV~F~~~e~A~~Al~-l 335 (364)
+...++|.+.|||.+-.-+.|.++|+.+ |.|..|+|..- + +. .+-+|+|+|...+.|.+|.+ |
T Consensus 228 el~srtivaenLP~Dh~~enl~kiFg~~-G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~ 306 (484)
T KOG1855|consen 228 ELPSRTIVAENLPLDHSYENLSKIFGTV-GSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELL 306 (484)
T ss_pred ccccceEEEecCCcchHHHHHHHHhhcc-cceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhh
Confidence 4678999999999998899999999996 99999999864 2 11 24489999999999999999 6
Q ss_pred CCCee
Q 017897 336 SGAVL 340 (364)
Q Consensus 336 ng~~~ 340 (364)
+...-
T Consensus 307 ~~e~~ 311 (484)
T KOG1855|consen 307 NPEQN 311 (484)
T ss_pred chhhh
Confidence 55433
No 168
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=96.70 E-value=0.0046 Score=61.33 Aligned_cols=76 Identities=21% Similarity=0.210 Sum_probs=60.4
Q ss_pred CCCcEEEEeCCCCCCc--H----HHHHHHhhcCCCeeEEEEecCC-CCCceEEEEEeCCHHHHHHHHH-ccccccC-Cee
Q 017897 176 VIRRTVYVSDIDQQVT--E----EQLATLFLTCGQVVDCRICGDP-NSVLRFAFVEFTDEEGARAALS-LAGTMLG-FYP 246 (364)
Q Consensus 176 ~~~~~lfV~nLp~~~t--e----~~L~~~F~~~G~i~~~~i~~d~-~~~rG~aFV~F~~~~~A~~al~-l~g~~l~-g~~ 246 (364)
.....|+|-|+|.--. . .-|..+|+++|+|+...++.+. +..+||.|++|.+..+|+.|++ |||+.|. .++
T Consensus 56 g~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHt 135 (698)
T KOG2314|consen 56 GFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHT 135 (698)
T ss_pred CcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccce
Confidence 3456799999984222 2 2355789999999999999876 4579999999999999999998 9999875 567
Q ss_pred EEEee
Q 017897 247 VRVLP 251 (364)
Q Consensus 247 i~V~~ 251 (364)
+.|..
T Consensus 136 f~v~~ 140 (698)
T KOG2314|consen 136 FFVRL 140 (698)
T ss_pred EEeeh
Confidence 77754
No 169
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=96.64 E-value=0.0019 Score=62.01 Aligned_cols=64 Identities=31% Similarity=0.488 Sum_probs=55.6
Q ss_pred CCCCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecC---CCC------------CceEEEEEeCCHHHHHHHHHcc
Q 017897 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGD---PNS------------VLRFAFVEFTDEEGARAALSLA 238 (364)
Q Consensus 175 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d---~~~------------~rG~aFV~F~~~~~A~~al~l~ 238 (364)
+...++|.+-|||.+-.-+.|.++|+.+|.|..|+|+.. +.. .+-+|+|+|+..+.|.+|.++.
T Consensus 228 el~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~ 306 (484)
T KOG1855|consen 228 ELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELL 306 (484)
T ss_pred ccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhh
Confidence 356799999999999999999999999999999999986 321 2568999999999999999933
No 170
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=96.60 E-value=0.0041 Score=61.71 Aligned_cols=74 Identities=16% Similarity=0.137 Sum_probs=60.1
Q ss_pred ceEEEEeCCCCCC--CH----HHHHHHhhhcCCceeEEEEeccC-CCCeeEEEEEecCHHHHHHHHh-cCCCeeC-Ceee
Q 017897 275 SRTIYCTNIDKKV--TQ----GDIKLFFESVCGEVQRLRLLGDY-QHSTRIAFVEFAMAESAIAALN-CSGAVLG-SLPI 345 (364)
Q Consensus 275 ~~~l~V~nLp~~~--te----e~L~~~F~~~~G~I~~v~i~~d~-~~~kg~afV~F~~~e~A~~Al~-lng~~~~-g~~l 345 (364)
...|+|-|+|.-- .. .-|.++|+++ |.|..+.++.+. |..+||.|++|.+..+|..|+. |||..|+ .+++
T Consensus 58 D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~-gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf 136 (698)
T KOG2314|consen 58 DSVVVVDGAPVVGPARLEKLKKVLTKVFSKA-GKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTF 136 (698)
T ss_pred ceEEEECCCcccChhHHHHHHHHHHHHHHhh-ccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccceE
Confidence 4688999998522 12 3366899997 999999999885 7799999999999999999999 9999885 4566
Q ss_pred EEee
Q 017897 346 RVSP 349 (364)
Q Consensus 346 ~V~~ 349 (364)
.|..
T Consensus 137 ~v~~ 140 (698)
T KOG2314|consen 137 FVRL 140 (698)
T ss_pred Eeeh
Confidence 6654
No 171
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=96.47 E-value=0.0021 Score=60.15 Aligned_cols=73 Identities=15% Similarity=0.256 Sum_probs=61.7
Q ss_pred CcEEEEeCCCCCCcHHHHHHHhhcCC--CeeEEEEecCC--CCCceEEEEEeCCHHHHHHHHH-ccccccCCeeEEEe
Q 017897 178 RRTVYVSDIDQQVTEEQLATLFLTCG--QVVDCRICGDP--NSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVL 250 (364)
Q Consensus 178 ~~~lfV~nLp~~~te~~L~~~F~~~G--~i~~~~i~~d~--~~~rG~aFV~F~~~~~A~~al~-l~g~~l~g~~i~V~ 250 (364)
...+|||||-|.+|+++|.+.+...| .+.++++...+ +.+||||.|...+..++.+.++ |...+|.|..-.|.
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~ 157 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVL 157 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeee
Confidence 35799999999999999999998777 56777776655 4689999999999999999999 99999988755554
No 172
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=96.46 E-value=0.0012 Score=59.38 Aligned_cols=60 Identities=25% Similarity=0.387 Sum_probs=50.0
Q ss_pred HHHHHHhh-cCCCeeEEEEecCCCC-CceEEEEEeCCHHHHHHHHH-ccccccCCeeEEEeeC
Q 017897 193 EQLATLFL-TCGQVVDCRICGDPNS-VLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPS 252 (364)
Q Consensus 193 ~~L~~~F~-~~G~i~~~~i~~d~~~-~rG~aFV~F~~~~~A~~al~-l~g~~l~g~~i~V~~a 252 (364)
++|...|+ +||+|+++.+...-.- -+|-+||.|..+++|++|++ ||+..+.|++|....+
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~ 145 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELS 145 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeec
Confidence 34444445 9999999988776543 37899999999999999998 9999999999998875
No 173
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.29 E-value=0.014 Score=48.69 Aligned_cols=69 Identities=32% Similarity=0.389 Sum_probs=53.1
Q ss_pred CcEEEEeCCC------CCCcH---HHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHHccccccCCeeEE
Q 017897 178 RRTVYVSDID------QQVTE---EQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALSLAGTMLGFYPVR 248 (364)
Q Consensus 178 ~~~lfV~nLp------~~~te---~~L~~~F~~~G~i~~~~i~~d~~~~rG~aFV~F~~~~~A~~al~l~g~~l~g~~i~ 248 (364)
..||.|.=+. ..+.+ .+|.+.|..||++.-+|+..+ .-.|+|.+-+.|.+|+.++|..+.|+.|.
T Consensus 27 DaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~~------~mwVTF~dg~sALaals~dg~~v~g~~l~ 100 (146)
T PF08952_consen 27 DATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVGD------TMWVTFRDGQSALAALSLDGIQVNGRTLK 100 (146)
T ss_dssp T-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEETT------CEEEEESSCHHHHHHHHGCCSEETTEEEE
T ss_pred CceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeCC------eEEEEECccHHHHHHHccCCcEECCEEEE
Confidence 4666666554 12332 367889999999998888875 58999999999999999999999999999
Q ss_pred EeeC
Q 017897 249 VLPS 252 (364)
Q Consensus 249 V~~a 252 (364)
|...
T Consensus 101 i~LK 104 (146)
T PF08952_consen 101 IRLK 104 (146)
T ss_dssp EEE-
T ss_pred EEeC
Confidence 9874
No 174
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=96.23 E-value=0.0027 Score=57.19 Aligned_cols=70 Identities=21% Similarity=0.247 Sum_probs=58.4
Q ss_pred CCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCC----------C----ceEEEEEeCCHHHHHHHHH-ccccc
Q 017897 177 IRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS----------V----LRFAFVEFTDEEGARAALS-LAGTM 241 (364)
Q Consensus 177 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~~~----------~----rG~aFV~F~~~~~A~~al~-l~g~~ 241 (364)
....||+++||+.+.-..|+++|+.||.|-.|.+-..... + ---|.|+|.+...|..+.. ||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 3577999999999999999999999999999988654321 1 1247899999999999887 99999
Q ss_pred cCCee
Q 017897 242 LGFYP 246 (364)
Q Consensus 242 l~g~~ 246 (364)
|+|+.
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 99874
No 175
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=95.78 E-value=0.064 Score=38.09 Aligned_cols=53 Identities=25% Similarity=0.338 Sum_probs=45.2
Q ss_pred eEEEEeCCCCCCCHHHHHHHhhhcCC--ceeEEEEeccCCCCeeEEEEEecCHHHHHHHHh
Q 017897 276 RTIYCTNIDKKVTQGDIKLFFESVCG--EVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN 334 (364)
Q Consensus 276 ~~l~V~nLp~~~tee~L~~~F~~~~G--~I~~v~i~~d~~~~kg~afV~F~~~e~A~~Al~ 334 (364)
..|+|++++ .++.++|+.+|..||. ...+|..+-|. .|-|.|.+.+.|.+||.
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt-----ScNvvf~d~~~A~~AL~ 60 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT-----SCNVVFKDEETAARALV 60 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC-----cEEEEECCHHHHHHHHH
Confidence 589999997 4888899999998733 56788888875 58999999999999987
No 176
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=95.60 E-value=0.0054 Score=55.33 Aligned_cols=60 Identities=27% Similarity=0.347 Sum_probs=48.8
Q ss_pred HHHHHHhh-hcCCceeEEEEeccC-CCCeeEEEEEecCHHHHHHHHh-cCCCeeCCeeeEEeec
Q 017897 290 GDIKLFFE-SVCGEVQRLRLLGDY-QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSPS 350 (364)
Q Consensus 290 e~L~~~F~-~~~G~I~~v~i~~d~-~~~kg~afV~F~~~e~A~~Al~-lng~~~~g~~l~V~~a 350 (364)
++|...|+ +| |+|..+.|..+- .+-.|=++|.|...++|++|+. ||+..+.|++|...+.
T Consensus 83 Ed~f~E~~~ky-gEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~ 145 (260)
T KOG2202|consen 83 EDVFTELEDKY-GEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELS 145 (260)
T ss_pred HHHHHHHHHHh-hhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeec
Confidence 34444444 65 999999776654 3567789999999999999999 9999999999998875
No 177
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=95.49 E-value=0.014 Score=58.39 Aligned_cols=76 Identities=16% Similarity=0.190 Sum_probs=62.3
Q ss_pred ccCceEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccCCCCeeEEEEEecCHHHHHHHHh-cCCCee---CCeeeEE
Q 017897 272 EMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVL---GSLPIRV 347 (364)
Q Consensus 272 ~~~~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~e~A~~Al~-lng~~~---~g~~l~V 347 (364)
......|||.||=..+|.-+|+.++.+-+|.|... ..| +-+..|||.|.+.++|..... |||... +++.|.+
T Consensus 441 ~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~--WmD--kIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~a 516 (718)
T KOG2416|consen 441 KEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF--WMD--KIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIA 516 (718)
T ss_pred CCccceEeeecccccchHHHHHHHHhhccCchHHH--HHH--HhhcceeEecccHHHHHHHHHHHhccccCCCCCceeEe
Confidence 45678999999999999999999999875677666 223 234479999999999999999 999855 6788998
Q ss_pred eecC
Q 017897 348 SPSK 351 (364)
Q Consensus 348 ~~ak 351 (364)
.|..
T Consensus 517 df~~ 520 (718)
T KOG2416|consen 517 DFVR 520 (718)
T ss_pred eecc
Confidence 8864
No 178
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=95.45 E-value=0.03 Score=53.47 Aligned_cols=76 Identities=22% Similarity=0.369 Sum_probs=63.2
Q ss_pred eEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccCC-----CCeeEEEEEecCHHHHHHHHhcCCCeeCCeeeEEeec
Q 017897 276 RTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQ-----HSTRIAFVEFAMAESAIAALNCSGAVLGSLPIRVSPS 350 (364)
Q Consensus 276 ~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~~-----~~kg~afV~F~~~e~A~~Al~lng~~~~g~~l~V~~a 350 (364)
..|.|.||.+.++.++++-+|.-. |.|..+.|++..+ .....|||.|.+...+..|..|-.+.|=++.|.|-..
T Consensus 8 ~vIqvanispsat~dqm~tlFg~l-GkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfvdraliv~p~ 86 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNL-GKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFVDRALIVRPY 86 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhc-cccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhccceeeeeeEEEEec
Confidence 489999999999999999999975 9999999998542 3455899999999999998887777777777777655
Q ss_pred CC
Q 017897 351 KT 352 (364)
Q Consensus 351 k~ 352 (364)
-.
T Consensus 87 ~~ 88 (479)
T KOG4676|consen 87 GD 88 (479)
T ss_pred CC
Confidence 43
No 179
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=95.29 E-value=0.018 Score=54.09 Aligned_cols=74 Identities=12% Similarity=0.141 Sum_probs=60.6
Q ss_pred CceEEEEeCCCCCCCHHHHHHHhhhcCC--ceeEEEEeccC--CCCeeEEEEEecCHHHHHHHHh-cCCCeeCCeeeEEe
Q 017897 274 CSRTIYCTNIDKKVTQGDIKLFFESVCG--EVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVS 348 (364)
Q Consensus 274 ~~~~l~V~nLp~~~tee~L~~~F~~~~G--~I~~v~i~~d~--~~~kg~afV~F~~~e~A~~Al~-lng~~~~g~~l~V~ 348 (364)
...++||+||-+-+|++||.+.+... | .+.+++++.+. |.++|||+|...+..+..+.++ |-..+|.|+.-.|.
T Consensus 79 rk~~~YvGNL~W~TTD~DL~~A~~S~-G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~ 157 (498)
T KOG4849|consen 79 RKYCCYVGNLLWYTTDADLLKALQST-GLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVL 157 (498)
T ss_pred ceEEEEecceeEEeccHHHHHHHHhh-hHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeee
Confidence 45799999999999999999988875 6 56666666553 7899999999999888888888 88999988754443
No 180
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=95.28 E-value=0.077 Score=43.89 Aligned_cols=74 Identities=23% Similarity=0.181 Sum_probs=54.8
Q ss_pred ccCceEEEEeCCCCCCC-HHHHH---HHhhhcCCceeEEEEeccCCCCeeEEEEEecCHHHHHHHHh-cCCCeeCCeeeE
Q 017897 272 EMCSRTIYCTNIDKKVT-QGDIK---LFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIR 346 (364)
Q Consensus 272 ~~~~~~l~V~nLp~~~t-ee~L~---~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~e~A~~Al~-lng~~~~g~~l~ 346 (364)
.++..+|.|+=|..+.. .+||+ ..++.| |.|.+|.+.... .|.|.|.+..+|.+|+. ++. ...|..++
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~f-GpI~SVT~cGrq-----savVvF~d~~SAC~Av~Af~s-~~pgtm~q 155 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVF-GPIQSVTLCGRQ-----SAVVVFKDITSACKAVSAFQS-RAPGTMFQ 155 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhc-CCcceeeecCCc-----eEEEEehhhHHHHHHHHhhcC-CCCCceEE
Confidence 55677888876555432 34444 555665 999999886543 79999999999999999 555 66788999
Q ss_pred EeecCC
Q 017897 347 VSPSKT 352 (364)
Q Consensus 347 V~~ak~ 352 (364)
++|...
T Consensus 156 CsWqqr 161 (166)
T PF15023_consen 156 CSWQQR 161 (166)
T ss_pred eecccc
Confidence 999653
No 181
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=95.22 E-value=0.011 Score=53.31 Aligned_cols=70 Identities=19% Similarity=0.247 Sum_probs=58.6
Q ss_pred CceEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccCC----------CCee----EEEEEecCHHHHHHHHh-cCCC
Q 017897 274 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQ----------HSTR----IAFVEFAMAESAIAALN-CSGA 338 (364)
Q Consensus 274 ~~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~~----------~~kg----~afV~F~~~e~A~~Al~-lng~ 338 (364)
....||+.+||+...-..|+++|+.| |.|=+|.+.+... ..+. -|.|+|.+.-.|..+.. ||+.
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~y-GeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~ 151 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQY-GEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNT 151 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhc-cccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCC
Confidence 45799999999999999999999997 9999999887431 1111 35789999999999888 9999
Q ss_pred eeCCee
Q 017897 339 VLGSLP 344 (364)
Q Consensus 339 ~~~g~~ 344 (364)
.|+|+.
T Consensus 152 ~Iggkk 157 (278)
T KOG3152|consen 152 PIGGKK 157 (278)
T ss_pred ccCCCC
Confidence 999874
No 182
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=95.12 E-value=0.026 Score=43.04 Aligned_cols=72 Identities=19% Similarity=0.174 Sum_probs=48.5
Q ss_pred EEEEeCCHHHHHHHHHccc--cccCCeeEEEee--CCCCCCCCCCCCCCCCccccccCceEEEEeCCCCCCCHHHHHHHh
Q 017897 221 AFVEFTDEEGARAALSLAG--TMLGFYPVRVLP--SKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFF 296 (364)
Q Consensus 221 aFV~F~~~~~A~~al~l~g--~~l~g~~i~V~~--a~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~tee~L~~~F 296 (364)
|.|+|.++.-|+..+++.. ..+++..+.|.- .... ...+-.-......++|.|.|||...++++|++..
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P~~~~-------~~~k~qv~~~vs~rtVlvsgip~~l~ee~l~D~L 73 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSPVTLG-------HLQKFQVFSGVSKRTVLVSGIPDVLDEEELRDKL 73 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEeEecC-------CceEEEEEEcccCCEEEEeCCCCCCChhhheeeE
Confidence 6899999999999998444 346666655543 2110 0011111225567899999999999999998877
Q ss_pred hhc
Q 017897 297 ESV 299 (364)
Q Consensus 297 ~~~ 299 (364)
+=|
T Consensus 74 eIh 76 (88)
T PF07292_consen 74 EIH 76 (88)
T ss_pred EEE
Confidence 643
No 183
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=94.97 E-value=0.072 Score=49.05 Aligned_cols=61 Identities=26% Similarity=0.204 Sum_probs=51.0
Q ss_pred HHHHHHHhhcCCCeeEEEEecCCCCC---ceEEEEEeCCHHHHHHHHH-ccccccCCeeEEEeeC
Q 017897 192 EEQLATLFLTCGQVVDCRICGDPNSV---LRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPS 252 (364)
Q Consensus 192 e~~L~~~F~~~G~i~~~~i~~d~~~~---rG~aFV~F~~~~~A~~al~-l~g~~l~g~~i~V~~a 252 (364)
++++++..++||.|..|.|.-+++.. .---||+|+..++|.+|+- |||..++|+.+...+.
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fy 364 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFY 364 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheec
Confidence 35677888999999999888876532 2347999999999999997 9999999999887764
No 184
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=94.92 E-value=0.16 Score=38.23 Aligned_cols=55 Identities=18% Similarity=0.316 Sum_probs=41.2
Q ss_pred CCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-cc
Q 017897 177 IRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LA 238 (364)
Q Consensus 177 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~~~~rG~aFV~F~~~~~A~~al~-l~ 238 (364)
.....+|+ .|.++...||.++|+.||.|. |..+.|. -|||.....+.|..++. +.
T Consensus 8 RdHVFhlt-FPkeWK~~DI~qlFspfG~I~-VsWi~dT-----SAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 8 RDHVFHLT-FPKEWKTSDIYQLFSPFGQIY-VSWINDT-----SAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp GCCEEEEE---TT--HHHHHHHCCCCCCEE-EEEECTT-----EEEEEECCCHHHHHHHHHHT
T ss_pred cceEEEEe-CchHhhhhhHHHHhccCCcEE-EEEEcCC-----cEEEEeecHHHHHHHHHHhc
Confidence 34456666 999999999999999999984 5556553 69999999999999987 54
No 185
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=94.37 E-value=0.42 Score=38.21 Aligned_cols=67 Identities=13% Similarity=0.140 Sum_probs=51.9
Q ss_pred eEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccCCCCeeEEEEEecCHHHHHHHHh-cCCCeeCC
Q 017897 276 RTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGS 342 (364)
Q Consensus 276 ~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~e~A~~Al~-lng~~~~g 342 (364)
..+.+-..|..++-++|..+.+++...|..++|++|....+--+++.|.+.++|..-.. .||..|+.
T Consensus 14 ~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 14 TLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred eEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 34444445555666777777777656788999999876677789999999999999999 99998764
No 186
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=94.30 E-value=0.31 Score=34.62 Aligned_cols=54 Identities=20% Similarity=0.247 Sum_probs=44.5
Q ss_pred CCcEEEEeCCCCCCcHHHHHHHhhcC---CCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH
Q 017897 177 IRRTVYVSDIDQQVTEEQLATLFLTC---GQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS 236 (364)
Q Consensus 177 ~~~~lfV~nLp~~~te~~L~~~F~~~---G~i~~~~i~~d~~~~rG~aFV~F~~~~~A~~al~ 236 (364)
....|+|.|+ .+++.++|+.+|..| .....+.++-|. -|=|.|.+.+.|.+||.
T Consensus 4 rpeavhirGv-d~lsT~dI~~y~~~y~~~~~~~~IEWIdDt-----ScNvvf~d~~~A~~AL~ 60 (62)
T PF10309_consen 4 RPEAVHIRGV-DELSTDDIKAYFSEYFDEEGPFRIEWIDDT-----SCNVVFKDEETAARALV 60 (62)
T ss_pred eeceEEEEcC-CCCCHHHHHHHHHHhcccCCCceEEEecCC-----cEEEEECCHHHHHHHHH
Confidence 3567999999 458899999999998 134578888875 48899999999999986
No 187
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=94.22 E-value=0.063 Score=48.57 Aligned_cols=95 Identities=24% Similarity=0.291 Sum_probs=69.8
Q ss_pred hhhhcCCC--CCccccccCCcccccCCCCCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCC-CCCceEEEEEeCC
Q 017897 151 RRKRNGYS--QGKRRMNCRTSNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP-NSVLRFAFVEFTD 227 (364)
Q Consensus 151 a~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~-~~~rG~aFV~F~~ 227 (364)
|...+... .|+. .++.++. ...|||.||+.-++.+.|.+.|+.||+|....++-|. .+..|-++|.|..
T Consensus 10 ak~eLd~~~~~~~~---lr~rfa~-----~a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~ 81 (275)
T KOG0115|consen 10 AKRELDGRFPKGRS---LRVRFAM-----HAELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAK 81 (275)
T ss_pred HHHhcCCCCCCCCc---eEEEeec-----cceEEEEecchhhhhHHHHHhhhhcCccchheeeecccccccccchhhhhc
Confidence 44444444 4555 4444443 3789999999999999999999999999887766654 5667889999999
Q ss_pred HHHHHHHHH-c--cc--cccCCeeEEEeeCC
Q 017897 228 EEGARAALS-L--AG--TMLGFYPVRVLPSK 253 (364)
Q Consensus 228 ~~~A~~al~-l--~g--~~l~g~~i~V~~a~ 253 (364)
.-.|.+|+. + .+ -+..+++.-|.+..
T Consensus 82 k~~a~~a~rr~~~~g~~~~~~~~p~~VeP~e 112 (275)
T KOG0115|consen 82 KPNARKAARRCREGGFGGTTGGRPVGVEPME 112 (275)
T ss_pred chhHHHHHHHhccCccccCCCCCccCCChhh
Confidence 999999987 3 22 22456777777653
No 188
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=93.48 E-value=0.071 Score=53.54 Aligned_cols=72 Identities=18% Similarity=0.127 Sum_probs=57.8
Q ss_pred CcEEEEeCCCCCCcHHHHHHHhh-cCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-cccccc---CCeeEEEeeC
Q 017897 178 RRTVYVSDIDQQVTEEQLATLFL-TCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTML---GFYPVRVLPS 252 (364)
Q Consensus 178 ~~~lfV~nLp~~~te~~L~~~F~-~~G~i~~~~i~~d~~~~rG~aFV~F~~~~~A~~al~-l~g~~l---~g~~i~V~~a 252 (364)
...|+|.||-.-+|.-+|++++. ..|.|++. + .|+- +..|||.|.+.++|.+.+. |+|..+ +++.|.+.|.
T Consensus 444 SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~-W-mDkI--KShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~adf~ 519 (718)
T KOG2416|consen 444 SNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF-W-MDKI--KSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIADFV 519 (718)
T ss_pred cceEeeecccccchHHHHHHHHhhccCchHHH-H-HHHh--hcceeEecccHHHHHHHHHHHhccccCCCCCceeEeeec
Confidence 45699999999999999999999 55666666 2 2332 3489999999999999997 999876 4678888876
Q ss_pred C
Q 017897 253 K 253 (364)
Q Consensus 253 ~ 253 (364)
.
T Consensus 520 ~ 520 (718)
T KOG2416|consen 520 R 520 (718)
T ss_pred c
Confidence 4
No 189
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=93.45 E-value=0.16 Score=50.77 Aligned_cols=69 Identities=22% Similarity=0.389 Sum_probs=56.1
Q ss_pred CCcEEEEeCCCCCCcHHHHHHHhhc--CCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-ccc--cccCCeeEEEe
Q 017897 177 IRRTVYVSDIDQQVTEEQLATLFLT--CGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAG--TMLGFYPVRVL 250 (364)
Q Consensus 177 ~~~~lfV~nLp~~~te~~L~~~F~~--~G~i~~~~i~~d~~~~rG~aFV~F~~~~~A~~al~-l~g--~~l~g~~i~V~ 250 (364)
..|.|+++-||.++-.|+++.+|+. +-.+.+|.+-...+ -||+|++..+|+.|.+ |.. .+|.|++|...
T Consensus 174 kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~n-----WyITfesd~DAQqAykylreevk~fqgKpImAR 247 (684)
T KOG2591|consen 174 KRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHNDN-----WYITFESDTDAQQAYKYLREEVKTFQGKPIMAR 247 (684)
T ss_pred ceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecCc-----eEEEeecchhHHHHHHHHHHHHHhhcCcchhhh
Confidence 3567889999999999999999984 77899998877643 7999999999999987 433 35788877543
No 190
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=93.25 E-value=0.34 Score=36.44 Aligned_cols=54 Identities=20% Similarity=0.356 Sum_probs=38.9
Q ss_pred eEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccCCCCeeEEEEEecCHHHHHHHHh-cC
Q 017897 276 RTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CS 336 (364)
Q Consensus 276 ~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~e~A~~Al~-ln 336 (364)
..+|--.+|..+-..||.++|++| |.|. |..+-|. .|||...+++.|..++. +.
T Consensus 9 dHVFhltFPkeWK~~DI~qlFspf-G~I~-VsWi~dT-----SAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 9 DHVFHLTFPKEWKTSDIYQLFSPF-GQIY-VSWINDT-----SAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp CCEEEEE--TT--HHHHHHHCCCC-CCEE-EEEECTT-----EEEEEECCCHHHHHHHHHHT
T ss_pred ceEEEEeCchHhhhhhHHHHhccC-CcEE-EEEEcCC-----cEEEEeecHHHHHHHHHHhc
Confidence 344444499999999999999997 9875 4454543 79999999999999888 54
No 191
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=93.17 E-value=0.046 Score=53.43 Aligned_cols=71 Identities=14% Similarity=0.160 Sum_probs=58.2
Q ss_pred EEEEeCCCCCCc-HHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHHccccccCCeeEEEeeCCC
Q 017897 180 TVYVSDIDQQVT-EEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSKT 254 (364)
Q Consensus 180 ~lfV~nLp~~~t-e~~L~~~F~~~G~i~~~~i~~d~~~~rG~aFV~F~~~~~A~~al~l~g~~l~g~~i~V~~a~~ 254 (364)
.|-+.-.|+... ..+|...|.+||.|..|.+-.... -|.|+|.+..+|-.|-..++..|+++.|+|.|-..
T Consensus 374 ~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~~----~a~vTF~t~aeag~a~~s~~avlnnr~iKl~whnp 445 (526)
T KOG2135|consen 374 PLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSSL----HAVVTFKTRAEAGEAYASHGAVLNNRFIKLFWHNP 445 (526)
T ss_pred hhhhhccCCCCchHhhhhhhhhhcCccccccccCchh----hheeeeeccccccchhccccceecCceeEEEEecC
Confidence 344444555554 589999999999999998866532 69999999999988988999999999999999754
No 192
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=93.16 E-value=0.15 Score=44.45 Aligned_cols=77 Identities=14% Similarity=0.078 Sum_probs=48.0
Q ss_pred CCCcEEEEeCCCCCCcHHHHHHHhhc-CCCe---eEEEEecCC--C--CCceEEEEEeCCHHHHHHHHH-ccccccCC--
Q 017897 176 VIRRTVYVSDIDQQVTEEQLATLFLT-CGQV---VDCRICGDP--N--SVLRFAFVEFTDEEGARAALS-LAGTMLGF-- 244 (364)
Q Consensus 176 ~~~~~lfV~nLp~~~te~~L~~~F~~-~G~i---~~~~i~~d~--~--~~rG~aFV~F~~~~~A~~al~-l~g~~l~g-- 244 (364)
....+|.|+.||+.+|++++.+.++. ++.. ..+.-.... . ..-.-|||.|.+.+++..... ++|+.+.+
T Consensus 5 ~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~k 84 (176)
T PF03467_consen 5 KEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSK 84 (176)
T ss_dssp ----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TT
T ss_pred ccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCC
Confidence 34568999999999999999998887 6765 233211221 1 124569999999999888887 99987642
Q ss_pred ---eeEEEeeC
Q 017897 245 ---YPVRVLPS 252 (364)
Q Consensus 245 ---~~i~V~~a 252 (364)
.+..|++|
T Consensus 85 g~~~~~~VE~A 95 (176)
T PF03467_consen 85 GNEYPAVVEFA 95 (176)
T ss_dssp S-EEEEEEEE-
T ss_pred CCCcceeEEEc
Confidence 24455554
No 193
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=93.06 E-value=0.36 Score=42.27 Aligned_cols=62 Identities=18% Similarity=0.204 Sum_probs=46.3
Q ss_pred CHHHHHHHhhhcCCceeEEEEeccCCCCeeEEEEEecCHHHHHHHHh-cC--CCeeCCeeeEEeecCCCC
Q 017897 288 TQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CS--GAVLGSLPIRVSPSKTPV 354 (364)
Q Consensus 288 tee~L~~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~e~A~~Al~-ln--g~~~~g~~l~V~~ak~~~ 354 (364)
..+.|+++|..+ +.+.....++..+ =..|.|.+.++|..|.. |+ +..+.|..++|.|++...
T Consensus 8 ~~~~l~~l~~~~-~~~~~~~~L~sFr----Ri~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~~ 72 (184)
T PF04847_consen 8 NLAELEELFSTY-DPPVQFSPLKSFR----RIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPTP 72 (184)
T ss_dssp -HHHHHHHHHTT--SS-EEEEETTTT----EEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----SS
T ss_pred hHHHHHHHHHhc-CCceEEEEcCCCC----EEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccccc
Confidence 457899999997 9999888888653 57899999999999999 99 999999999999996543
No 194
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=93.00 E-value=0.28 Score=49.08 Aligned_cols=67 Identities=15% Similarity=0.211 Sum_probs=53.1
Q ss_pred ceEEEEeCCCCCCCHHHHHHHhhh-cCCceeEEEEeccCCCCeeEEEEEecCHHHHHHHHh-cCC--CeeCCeeeE
Q 017897 275 SRTIYCTNIDKKVTQGDIKLFFES-VCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSG--AVLGSLPIR 346 (364)
Q Consensus 275 ~~~l~V~nLp~~~tee~L~~~F~~-~~G~I~~v~i~~d~~~~kg~afV~F~~~e~A~~Al~-lng--~~~~g~~l~ 346 (364)
.+.|.|+-||..+..|+++.+|.- -|-.+.+|..-.+.+ -||+|++..+|..|.. |.. .+|.|++|.
T Consensus 175 RcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~n-----WyITfesd~DAQqAykylreevk~fqgKpIm 245 (684)
T KOG2591|consen 175 RCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHNDN-----WYITFESDTDAQQAYKYLREEVKTFQGKPIM 245 (684)
T ss_pred eeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecCc-----eEEEeecchhHHHHHHHHHHHHHhhcCcchh
Confidence 478889999999999999999973 245788888876653 6999999999999987 543 366666553
No 195
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=92.37 E-value=0.79 Score=44.89 Aligned_cols=68 Identities=16% Similarity=0.218 Sum_probs=60.0
Q ss_pred CCcEEEEeCCCCCCcHHHHHHHhhcCC-CeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-ccccccCC
Q 017897 177 IRRTVYVSDIDQQVTEEQLATLFLTCG-QVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGF 244 (364)
Q Consensus 177 ~~~~lfV~nLp~~~te~~L~~~F~~~G-~i~~~~i~~d~~~~rG~aFV~F~~~~~A~~al~-l~g~~l~g 244 (364)
....|+|-.+|..++-.||..|...+- .|.++++++|...++=...|.|.+.++|....+ +||..+..
T Consensus 73 ~~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 73 SSTMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CCcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 368899999999999999999998664 689999999876667789999999999999997 99998764
No 196
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=91.82 E-value=1.7 Score=34.66 Aligned_cols=65 Identities=15% Similarity=0.156 Sum_probs=48.5
Q ss_pred cEEEE-eCCCCCCcHHHHHHHhhcCC-CeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-ccccccC
Q 017897 179 RTVYV-SDIDQQVTEEQLATLFLTCG-QVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLG 243 (364)
Q Consensus 179 ~~lfV-~nLp~~~te~~L~~~F~~~G-~i~~~~i~~d~~~~rG~aFV~F~~~~~A~~al~-l~g~~l~ 243 (364)
..+.| ...|..++-++|..+.+.+- .|..++|++|...++=.+.+.|.+.+.|+...+ +||+.++
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fn 80 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFN 80 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccC
Confidence 44444 44445555566766666554 578889999876677789999999999999997 9998875
No 197
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=91.66 E-value=0.32 Score=45.15 Aligned_cols=69 Identities=23% Similarity=0.305 Sum_probs=53.3
Q ss_pred cEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHHccccccCCe-eEEEeeC
Q 017897 179 RTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALSLAGTMLGFY-PVRVLPS 252 (364)
Q Consensus 179 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~~~~rG~aFV~F~~~~~A~~al~l~g~~l~g~-~i~V~~a 252 (364)
.=|-|-+.|+.-. .-|..+|++||+|++......- .+-+|.|.+.-+|.+||..+|..|.|. -|=|+++
T Consensus 198 ~WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~~ng----NwMhirYssr~~A~KALskng~ii~g~vmiGVkpC 267 (350)
T KOG4285|consen 198 TWVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTPSNG----NWMHIRYSSRTHAQKALSKNGTIIDGDVMIGVKPC 267 (350)
T ss_pred ceEEEeccCccch-hHHHHHHHhhCeeeeeecCCCC----ceEEEEecchhHHHHhhhhcCeeeccceEEeeeec
Confidence 3466777877544 4577899999999887665222 399999999999999999999999875 4566664
No 198
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=91.25 E-value=0.072 Score=50.07 Aligned_cols=78 Identities=14% Similarity=0.254 Sum_probs=61.8
Q ss_pred eEEEEeCCCCCCCHHHHH---HHhhhcCCceeEEEEeccC----C-CCeeEEEEEecCHHHHHHHHh-cCCCeeCCeeeE
Q 017897 276 RTIYCTNIDKKVTQGDIK---LFFESVCGEVQRLRLLGDY----Q-HSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIR 346 (364)
Q Consensus 276 ~~l~V~nLp~~~tee~L~---~~F~~~~G~I~~v~i~~d~----~-~~kg~afV~F~~~e~A~~Al~-lng~~~~g~~l~ 346 (364)
..+||-+|+..+.++.+. +.|.+| |.|..|.+.++. . ....-++|+|...++|..||. .+|+.+.|+.|+
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqy-gki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lk 156 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQY-GKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALK 156 (327)
T ss_pred hhhhhhCCCccccchhhhhCccccccc-ccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhH
Confidence 567888888776555544 578886 999999888764 1 123358999999999999999 999999999999
Q ss_pred EeecCCCC
Q 017897 347 VSPSKTPV 354 (364)
Q Consensus 347 V~~ak~~~ 354 (364)
..+..++.
T Consensus 157 a~~gttky 164 (327)
T KOG2068|consen 157 ASLGTTKY 164 (327)
T ss_pred HhhCCCcc
Confidence 98887664
No 199
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=90.83 E-value=10 Score=35.35 Aligned_cols=163 Identities=13% Similarity=0.116 Sum_probs=99.8
Q ss_pred cCCCCCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCCC---------CCceEEEEEeCCHHHHHHHH----H-cc
Q 017897 173 QDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN---------SVLRFAFVEFTDEEGARAAL----S-LA 238 (364)
Q Consensus 173 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~~---------~~rG~aFV~F~~~~~A~~al----~-l~ 238 (364)
.+.-..|.|.+.|+..+++-..+...|-+||+|++|.++.+.. +...-..+.|-+.+.+...- + |.
T Consensus 10 dD~YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLs 89 (309)
T PF10567_consen 10 DDEYRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLS 89 (309)
T ss_pred CccceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHH
Confidence 3444567899999999999999999999999999999998651 23457889999988876542 2 22
Q ss_pred c--cccCCeeEEEeeCCCCCCCCC------CCCC----CCC--ccccccCceEEEEeCCCCCCCHHHHHHHhhhc---CC
Q 017897 239 G--TMLGFYPVRVLPSKTAIAPVN------PTFL----PRS--EDEREMCSRTIYCTNIDKKVTQGDIKLFFESV---CG 301 (364)
Q Consensus 239 g--~~l~g~~i~V~~a~~~~~~~~------~~~~----~~~--~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~~---~G 301 (364)
. +.+....|.|.+..-...... +.+. +.- .-......|.|.|.--.+...++-+.+.+. | -+
T Consensus 90 EfK~~L~S~~L~lsFV~l~y~~~~~~~~~~~~~~~~~~~~L~~~i~~~gATRSl~IeF~~~~~~~dl~~~kL~-fL~~~~ 168 (309)
T PF10567_consen 90 EFKTKLKSESLTLSFVSLNYQKKTDPNDEEADFSDYLVASLQYNIINRGATRSLAIEFKDPVDKDDLIEKKLP-FLKNSN 168 (309)
T ss_pred HHHHhcCCcceeEEEEEEeccccccccccccchhhHHhhhhhheeecCCcceEEEEEecCccchhHHHHHhhh-hhccCC
Confidence 2 235556666655432211111 0010 000 001133456777754333223333333331 1 13
Q ss_pred ----ceeEEEEeccC----CCCeeEEEEEecCHHHHHHHHh-cC
Q 017897 302 ----EVQRLRLLGDY----QHSTRIAFVEFAMAESAIAALN-CS 336 (364)
Q Consensus 302 ----~I~~v~i~~d~----~~~kg~afV~F~~~e~A~~Al~-ln 336 (364)
-+++|.++... .-++.||.++|-+...|...+. +.
T Consensus 169 n~RYVlEsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~dYlk 212 (309)
T PF10567_consen 169 NKRYVLESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLDYLK 212 (309)
T ss_pred CceEEEEEEEEeccCcccccCCcceEEEeehhHHhHHHHHHHHH
Confidence 36677777533 3467799999999999999987 54
No 200
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=90.73 E-value=0.38 Score=41.90 Aligned_cols=78 Identities=12% Similarity=0.120 Sum_probs=48.7
Q ss_pred ceEEEEeCCCCCCCHHHHHHHhhhcCCce---eEEEE-eccC---CCCeeEEEEEecCHHHHHHHHh-cCCCeeCC----
Q 017897 275 SRTIYCTNIDKKVTQGDIKLFFESVCGEV---QRLRL-LGDY---QHSTRIAFVEFAMAESAIAALN-CSGAVLGS---- 342 (364)
Q Consensus 275 ~~~l~V~nLp~~~tee~L~~~F~~~~G~I---~~v~i-~~d~---~~~kg~afV~F~~~e~A~~Al~-lng~~~~g---- 342 (364)
...|.|++||+.+|++++++.+.++++.. .++.- ..+. ...-.-|||.|.+.+++..-.. ++|..|-+
T Consensus 7 ~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg~ 86 (176)
T PF03467_consen 7 GTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKGN 86 (176)
T ss_dssp --EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS-
T ss_pred CceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCCC
Confidence 46899999999999999999888733655 33331 1111 1123369999999999888888 99987632
Q ss_pred -eeeEEeecCC
Q 017897 343 -LPIRVSPSKT 352 (364)
Q Consensus 343 -~~l~V~~ak~ 352 (364)
.+..|.+|--
T Consensus 87 ~~~~~VE~Apy 97 (176)
T PF03467_consen 87 EYPAVVEFAPY 97 (176)
T ss_dssp EEEEEEEE-SS
T ss_pred CcceeEEEcch
Confidence 2456666543
No 201
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=90.71 E-value=0.11 Score=48.80 Aligned_cols=76 Identities=18% Similarity=0.281 Sum_probs=60.2
Q ss_pred cEEEEeCCCCCCcHHHHH---HHhhcCCCeeEEEEecCCC--CC---ceEEEEEeCCHHHHHHHHH-ccccccCCeeEEE
Q 017897 179 RTVYVSDIDQQVTEEQLA---TLFLTCGQVVDCRICGDPN--SV---LRFAFVEFTDEEGARAALS-LAGTMLGFYPVRV 249 (364)
Q Consensus 179 ~~lfV~nLp~~~te~~L~---~~F~~~G~i~~~~i~~d~~--~~---rG~aFV~F~~~~~A~~al~-l~g~~l~g~~i~V 249 (364)
.-+||-+|+..+..+.+. +.|.+||.|..+.+..++- .+ ---+||+|+..++|..||. .+|..+.|+.++.
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka 157 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKA 157 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHH
Confidence 448899999887666554 5899999999998888762 11 1238999999999999998 9999999998777
Q ss_pred eeCCC
Q 017897 250 LPSKT 254 (364)
Q Consensus 250 ~~a~~ 254 (364)
.+..+
T Consensus 158 ~~gtt 162 (327)
T KOG2068|consen 158 SLGTT 162 (327)
T ss_pred hhCCC
Confidence 66543
No 202
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=90.53 E-value=0.85 Score=44.66 Aligned_cols=68 Identities=16% Similarity=0.229 Sum_probs=60.2
Q ss_pred ceEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccCCCCeeEEEEEecCHHHHHHHHh-cCCCeeCC
Q 017897 275 SRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGS 342 (364)
Q Consensus 275 ~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~e~A~~Al~-lng~~~~g 342 (364)
...|+|-.+|-.++-.||..+...+.-.|..+++++|.--.+-..+|.|.+.++|....+ +||..|+.
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 689999999999999999999999877899999999764455578999999999999999 99998864
No 203
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=90.48 E-value=0.18 Score=52.72 Aligned_cols=72 Identities=31% Similarity=0.329 Sum_probs=60.6
Q ss_pred EEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccCCCCeeEEEEEecCHHHHHHHHh-cCCCee--CCeeeEEeecCCCCC
Q 017897 279 YCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVL--GSLPIRVSPSKTPVR 355 (364)
Q Consensus 279 ~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~e~A~~Al~-lng~~~--~g~~l~V~~ak~~~~ 355 (364)
++.|.+-..+-.-|.-+|+.| |.|.++..+++.+ .|.|+|.+.+.|..|+. |+|.++ -|-+.+|.++++.+.
T Consensus 302 ~~~nn~v~~tSssL~~l~s~y-g~v~s~wtlr~~N----~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~~~ 376 (1007)
T KOG4574|consen 302 SLENNAVNLTSSSLATLCSDY-GSVASAWTLRDLN----MALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTLPM 376 (1007)
T ss_pred hhhcccccchHHHHHHHHHhh-cchhhheeccccc----chhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecccccc
Confidence 344445566777899999997 9999999999875 79999999999999999 999865 678899999987653
No 204
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=89.94 E-value=0.22 Score=48.89 Aligned_cols=72 Identities=21% Similarity=0.194 Sum_probs=57.7
Q ss_pred EEEEeCCCCCC-CHHHHHHHhhhcCCceeEEEEeccCCCCeeEEEEEecCHHHHHHHHhcCCCeeCCeeeEEeecCCC
Q 017897 277 TIYCTNIDKKV-TQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALNCSGAVLGSLPIRVSPSKTP 353 (364)
Q Consensus 277 ~l~V~nLp~~~-tee~L~~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~e~A~~Al~lng~~~~g~~l~V~~ak~~ 353 (364)
.|-+.-.|+.. +-++|...|.+| |.|..|.+-... -.|.|+|.++.+|-.|-..++..|+++.|+|-|-++.
T Consensus 374 ~l~lek~~~glnt~a~ln~hfA~f-G~i~n~qv~~~~----~~a~vTF~t~aeag~a~~s~~avlnnr~iKl~whnps 446 (526)
T KOG2135|consen 374 PLALEKSPFGLNTIADLNPHFAQF-GEIENIQVDYSS----LHAVVTFKTRAEAGEAYASHGAVLNNRFIKLFWHNPS 446 (526)
T ss_pred hhhhhccCCCCchHhhhhhhhhhc-CccccccccCch----hhheeeeeccccccchhccccceecCceeEEEEecCC
Confidence 44444445543 457899999997 999999885542 2699999999999888888999999999999998873
No 205
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=88.75 E-value=1.5 Score=38.40 Aligned_cols=60 Identities=27% Similarity=0.190 Sum_probs=44.9
Q ss_pred cHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-cc--ccccCCeeEEEeeCCC
Q 017897 191 TEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LA--GTMLGFYPVRVLPSKT 254 (364)
Q Consensus 191 te~~L~~~F~~~G~i~~~~i~~d~~~~rG~aFV~F~~~~~A~~al~-l~--g~~l~g~~i~V~~a~~ 254 (364)
..+.|+++|..|+.+.....+..- +=..|.|.+.+.|.+|.. |+ +..+.|..++|.++..
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~sF----rRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~ 70 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKSF----RRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQP 70 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETTT----TEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----
T ss_pred hHHHHHHHHHhcCCceEEEEcCCC----CEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccc
Confidence 347899999999999988887654 358999999999999998 88 8899999999998743
No 206
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=88.24 E-value=2.7 Score=30.29 Aligned_cols=55 Identities=22% Similarity=0.288 Sum_probs=42.5
Q ss_pred CCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-ccccccCCeeEEE
Q 017897 188 QQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRV 249 (364)
Q Consensus 188 ~~~te~~L~~~F~~~G~i~~~~i~~d~~~~rG~aFV~F~~~~~A~~al~-l~g~~l~g~~i~V 249 (364)
..++-++|+..+..|+-. +|..|+. | =||.|.+..+|++|.. .++..+.+..+.+
T Consensus 10 ~~~~v~d~K~~Lr~y~~~---~I~~d~t---G-fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 10 HGVTVEDFKKRLRKYRWD---RIRDDRT---G-FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CCccHHHHHHHHhcCCcc---eEEecCC---E-EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 357789999999999753 3444543 5 5899999999999998 8888877776654
No 207
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=87.87 E-value=1.6 Score=36.24 Aligned_cols=71 Identities=17% Similarity=0.158 Sum_probs=54.0
Q ss_pred CCcEEEEeCCCCCC----cHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-ccccccCCeeEEEee
Q 017897 177 IRRTVYVSDIDQQV----TEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLP 251 (364)
Q Consensus 177 ~~~~lfV~nLp~~~----te~~L~~~F~~~G~i~~~~i~~d~~~~rG~aFV~F~~~~~A~~al~-l~g~~l~g~~i~V~~ 251 (364)
.-.+|.|+=|...+ +-..+...++.||+|.+|.++.. --|.|.|.+..+|=+|+. +.. ...|..+...|
T Consensus 85 PMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cGr-----qsavVvF~d~~SAC~Av~Af~s-~~pgtm~qCsW 158 (166)
T PF15023_consen 85 PMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCGR-----QSAVVVFKDITSACKAVSAFQS-RAPGTMFQCSW 158 (166)
T ss_pred CceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecCC-----ceEEEEehhhHHHHHHHHhhcC-CCCCceEEeec
Confidence 34678887655444 34456677889999999988754 369999999999999997 554 56788888888
Q ss_pred CC
Q 017897 252 SK 253 (364)
Q Consensus 252 a~ 253 (364)
-.
T Consensus 159 qq 160 (166)
T PF15023_consen 159 QQ 160 (166)
T ss_pred cc
Confidence 53
No 208
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=86.69 E-value=1.4 Score=41.05 Aligned_cols=68 Identities=16% Similarity=0.162 Sum_probs=53.1
Q ss_pred eEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccCCCCeeEEEEEecCHHHHHHHHhcCCCeeCCe-eeEEee
Q 017897 276 RTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALNCSGAVLGSL-PIRVSP 349 (364)
Q Consensus 276 ~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~e~A~~Al~lng~~~~g~-~l~V~~ 349 (364)
.-|-|-++|+.- -.-|..+|+++ |.|++......- .|-.|.|.++-+|.+||.-||+.|+|. .|-|..
T Consensus 198 ~WVTVfGFppg~-~s~vL~~F~~c-G~Vvkhv~~~ng----NwMhirYssr~~A~KALskng~ii~g~vmiGVkp 266 (350)
T KOG4285|consen 198 TWVTVFGFPPGQ-VSIVLNLFSRC-GEVVKHVTPSNG----NWMHIRYSSRTHAQKALSKNGTIIDGDVMIGVKP 266 (350)
T ss_pred ceEEEeccCccc-hhHHHHHHHhh-CeeeeeecCCCC----ceEEEEecchhHHHHhhhhcCeeeccceEEeeee
Confidence 456677788754 45678899995 999887665332 399999999999999999999999875 566666
No 209
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=84.21 E-value=4.2 Score=29.76 Aligned_cols=59 Identities=24% Similarity=0.353 Sum_probs=34.8
Q ss_pred CCCCHHHHHHHhhhcCC----ceeEEEEeccCCCCeeEEEEEecCHHHHHHHHh-cCCCeeCCeeeEEeec
Q 017897 285 KKVTQGDIKLFFESVCG----EVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSPS 350 (364)
Q Consensus 285 ~~~tee~L~~~F~~~~G----~I~~v~i~~d~~~~kg~afV~F~~~e~A~~Al~-lng~~~~g~~l~V~~a 350 (364)
..++..+|..++....| .|-.|.|... |+||+-.. +.|..++. |++..+.|++|+|+.|
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~------~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFDN------FSFVEVPE-EVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-SS-------EEEEE-T-T-HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEeee------EEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 35778888888887522 4557777554 89999876 47788888 9999999999999864
No 210
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=84.02 E-value=0.99 Score=46.22 Aligned_cols=69 Identities=17% Similarity=0.129 Sum_probs=60.2
Q ss_pred CceEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccCCCCeeEEEEEecCHHHHHHHHh-cCCCeeCCeeeEEeec
Q 017897 274 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSPS 350 (364)
Q Consensus 274 ~~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~e~A~~Al~-lng~~~~g~~l~V~~a 350 (364)
+..++||+|+-..+.++-++.+... ||.|.++.... |||..|..+.-+..|+. ++-..++|..+.+...
T Consensus 39 ~~~~vfv~~~~~~~s~~~~~~il~~-~g~v~s~kr~~-------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~d 108 (668)
T KOG2253|consen 39 PRDTVFVGNISYLVSQEFWKSILAK-SGFVPSWKRDK-------FGFCEFLKHIGDLRASRLLTELNIDDQKLIENVD 108 (668)
T ss_pred CCceeEecchhhhhhHHHHHHHHhh-CCcchhhhhhh-------hcccchhhHHHHHHHHHHhcccCCCcchhhccch
Confidence 4479999999999999999999987 79998876655 89999999999999999 8889999988777663
No 211
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=83.48 E-value=1.8 Score=36.10 Aligned_cols=117 Identities=13% Similarity=0.029 Sum_probs=74.7
Q ss_pred EEEeCC-C-CCCcHHHHHHHhhc----CCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHHccccccCCeeEEEeeCCC
Q 017897 181 VYVSDI-D-QQVTEEQLATLFLT----CGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSKT 254 (364)
Q Consensus 181 lfV~nL-p-~~~te~~L~~~F~~----~G~i~~~~i~~d~~~~rG~aFV~F~~~~~A~~al~l~g~~l~g~~i~V~~a~~ 254 (364)
..||.+ . ...+-..|...+.. .|.+. ++-+. .++..+.|.+++++.++++.....+.|..+.+..-.+
T Consensus 18 ~lVg~~l~~~~~~~~~l~~~l~~~W~~~~~~~-i~~l~-----~~~fl~~F~~~~d~~~vl~~~p~~~~~~~~~l~~W~~ 91 (153)
T PF14111_consen 18 CLVGRVLSPKPISLSALEQELAKIWKLKGGVK-IRDLG-----DNLFLFQFESEEDRQRVLKGGPWNFNGHFLILQRWSP 91 (153)
T ss_pred EEEEEECCCCCCCHHHHHHHHHHHhCCCCcEE-EEEeC-----CCeEEEEEEeccceeEEEecccccccccchhhhhhcc
Confidence 444444 2 34556666665553 34333 22222 2699999999999999998666678888888876542
Q ss_pred CCCCCCCCCCCCCccccccCceEEEEeCCCCC-CCHHHHHHHhhhcCCceeEEEEeccC
Q 017897 255 AIAPVNPTFLPRSEDEREMCSRTIYCTNIDKK-VTQGDIKLFFESVCGEVQRLRLLGDY 312 (364)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~-~tee~L~~~F~~~~G~I~~v~i~~d~ 312 (364)
...+. . ..-....-=|.|.|||.. .+++-|+.+-+.. |.+..+......
T Consensus 92 ~~~~~-------~-~~~~~~~vWVri~glP~~~~~~~~~~~i~~~i-G~~i~vD~~t~~ 141 (153)
T PF14111_consen 92 DFNPS-------E-VKFEHIPVWVRIYGLPLHLWSEEILKAIGSKI-GEPIEVDENTLK 141 (153)
T ss_pred ccccc-------c-cceeccchhhhhccCCHHHhhhHHHHHHHHhc-CCeEEEEcCCCC
Confidence 21111 1 000112345778899987 7888899999886 999988775543
No 212
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=82.71 E-value=1.2 Score=45.65 Aligned_cols=144 Identities=18% Similarity=0.166 Sum_probs=92.5
Q ss_pred CCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-ccccccCCeeEEEeeCCCC
Q 017897 177 IRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSKTA 255 (364)
Q Consensus 177 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~~~~rG~aFV~F~~~~~A~~al~-l~g~~l~g~~i~V~~a~~~ 255 (364)
..-++||+|+...+..+-++.+...+|.|-+++... |||..|..+.....|+. +.-..++|..+.+......
T Consensus 39 ~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~-------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~d~q~ 111 (668)
T KOG2253|consen 39 PRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK-------FGFCEFLKHIGDLRASRLLTELNIDDQKLIENVDEQT 111 (668)
T ss_pred CCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh-------hcccchhhHHHHHHHHHHhcccCCCcchhhccchhhh
Confidence 457899999999999999999999999998876654 99999999999999998 7777788888777663221
Q ss_pred CCC----------CCCCCCCCCccccccCceEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccC-CCCeeEEEEEec
Q 017897 256 IAP----------VNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY-QHSTRIAFVEFA 324 (364)
Q Consensus 256 ~~~----------~~~~~~~~~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~-~~~kg~afV~F~ 324 (364)
+.. ....|.|... .+-++|.|+|..+.+......+.=. +...+..-+... .+..-++|-+|.
T Consensus 112 ~~n~~k~~~~~~~~~~~f~p~~s------rr~e~i~~k~~~l~~~~~~~~~~is-~s~~s~~~~~e~d~h~~e~~~~~~~ 184 (668)
T KOG2253|consen 112 IENADKEKSIANKESHKFVPSSS------RRQESIQNKPLSLDEQIHKKSLQIS-SSAASRRQIAEADDHCLELEKTETE 184 (668)
T ss_pred hcCccccccchhhhhcccCCchh------HHHHHhhccccchhHHHHHHHHhcc-chhhhhhhhHHHHHHHHHHHHhhcc
Confidence 110 0111222221 4677888888877777666666532 333333222221 222334455555
Q ss_pred CHHHHHHHHh
Q 017897 325 MAESAIAALN 334 (364)
Q Consensus 325 ~~e~A~~Al~ 334 (364)
+...+..++.
T Consensus 185 s~~~~~~~~~ 194 (668)
T KOG2253|consen 185 SNSALSKEAE 194 (668)
T ss_pred cccccCcccc
Confidence 4444444433
No 213
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=81.97 E-value=6.3 Score=28.83 Aligned_cols=58 Identities=24% Similarity=0.285 Sum_probs=34.7
Q ss_pred CCCcHHHHHHHhhcCCC-----eeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-ccccccCCeeEEEeeC
Q 017897 188 QQVTEEQLATLFLTCGQ-----VVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPS 252 (364)
Q Consensus 188 ~~~te~~L~~~F~~~G~-----i~~~~i~~d~~~~rG~aFV~F~~~~~A~~al~-l~g~~l~g~~i~V~~a 252 (364)
..++..+|..++...+. |-.+++... |+||+-... .|..+++ |++..+.|+++.|+.|
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~------~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFDN------FSFVEVPEE-VAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-SS-------EEEEE-TT--HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEeee------EEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEEC
Confidence 45778888888886644 566666553 999998764 7788887 9999999999999864
No 214
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=79.77 E-value=1.2 Score=46.98 Aligned_cols=71 Identities=32% Similarity=0.321 Sum_probs=61.0
Q ss_pred EEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-cccccc--CCeeEEEeeCCC
Q 017897 180 TVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTML--GFYPVRVLPSKT 254 (364)
Q Consensus 180 ~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~~~~rG~aFV~F~~~~~A~~al~-l~g~~l--~g~~i~V~~a~~ 254 (364)
+.++-|.+-..+...|..+|..||.|.+++.+++-+ .|.|+|.+.+.|..|+. +.|..+ -|-+.+|..++.
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N----~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~ 373 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDLN----MALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKT 373 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhheeccccc----chhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccc
Confidence 355566677788889999999999999999998876 89999999999999998 999875 488889988765
No 215
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=75.74 E-value=18 Score=25.99 Aligned_cols=54 Identities=19% Similarity=0.225 Sum_probs=41.7
Q ss_pred CCCHHHHHHHhhhcCCceeEEEEeccCCCCeeEEEEEecCHHHHHHHHh-cCCCeeCCeeeEE
Q 017897 286 KVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRV 347 (364)
Q Consensus 286 ~~tee~L~~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~e~A~~Al~-lng~~~~g~~l~V 347 (364)
.++-++++..+..| + -..| ..|+ .| =||.|.+..+|.+|.. .+|..+.+.+|.+
T Consensus 11 ~~~v~d~K~~Lr~y-~-~~~I--~~d~---tG-fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKY-R-WDRI--RDDR---TG-FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcC-C-cceE--EecC---CE-EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 46789999999997 3 3333 3332 23 3799999999999999 9999998887765
No 216
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.38 E-value=11 Score=36.65 Aligned_cols=57 Identities=23% Similarity=0.303 Sum_probs=48.9
Q ss_pred CCcEEEEeCCCCCCcHHHHHHHhhcCCC-eeEEEEecCCCCCceEEEEEeCCHHHHHHHHHcc
Q 017897 177 IRRTVYVSDIDQQVTEEQLATLFLTCGQ-VVDCRICGDPNSVLRFAFVEFTDEEGARAALSLA 238 (364)
Q Consensus 177 ~~~~lfV~nLp~~~te~~L~~~F~~~G~-i~~~~i~~d~~~~rG~aFV~F~~~~~A~~al~l~ 238 (364)
-...|=|.++|.....+||...|+.|+. --+|+++-|. .||..|.+...|..||.+.
T Consensus 390 lpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-----halaVFss~~~AaeaLt~k 447 (528)
T KOG4483|consen 390 LPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-----HALAVFSSVNRAAEALTLK 447 (528)
T ss_pred ccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-----eeEEeecchHHHHHHhhcc
Confidence 3457899999999999999999999975 4677888775 7999999999999999863
No 217
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=66.61 E-value=26 Score=35.73 Aligned_cols=74 Identities=22% Similarity=0.281 Sum_probs=58.0
Q ss_pred ccCceEEEEeCCCCC-CCHHHHHHHhhhc---CCceeEEEEeccC-CC----------C---------------------
Q 017897 272 EMCSRTIYCTNIDKK-VTQGDIKLFFESV---CGEVQRLRLLGDY-QH----------S--------------------- 315 (364)
Q Consensus 272 ~~~~~~l~V~nLp~~-~tee~L~~~F~~~---~G~I~~v~i~~d~-~~----------~--------------------- 315 (364)
....++|-|.||++. +.-.+|.-+|..| -|.|.+|.|.+.. |+ +
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 345689999999985 7778999888865 3589999998743 21 1
Q ss_pred -----------------eeEEEEEecCHHHHHHHHh-cCCCeeCCeee
Q 017897 316 -----------------TRIAFVEFAMAESAIAALN-CSGAVLGSLPI 345 (364)
Q Consensus 316 -----------------kg~afV~F~~~e~A~~Al~-lng~~~~g~~l 345 (364)
--||.|+|.+.+.|.+... +.|.+|.....
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~ 298 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSAN 298 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccc
Confidence 1289999999999999998 99999975533
No 218
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=62.60 E-value=7.3 Score=31.39 Aligned_cols=59 Identities=19% Similarity=0.237 Sum_probs=32.6
Q ss_pred EEEEeCCCCC---------CcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCC-HHHHHHHHHccc
Q 017897 180 TVYVSDIDQQ---------VTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTD-EEGARAALSLAG 239 (364)
Q Consensus 180 ~lfV~nLp~~---------~te~~L~~~F~~~G~i~~~~i~~d~~~~rG~aFV~F~~-~~~A~~al~l~g 239 (364)
++.|-|++.+ .+.+.|++.|+.|..+. ++.+.++..+.|++.|.|.. ..--..|++|..
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k-v~~l~~~~gh~g~aiv~F~~~w~Gf~~A~~l~~ 78 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK-VKPLYGKQGHTGFAIVEFNKDWSGFKNAMRLEK 78 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SE-EEEEEETTEEEEEEEEE--SSHHHHHHHHHHHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce-eEECcCCCCCcEEEEEEECCChHHHHHHHHHHH
Confidence 4556666543 34578999999999875 55566665668999999966 344445665443
No 219
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=62.50 E-value=2.3 Score=32.44 Aligned_cols=26 Identities=38% Similarity=0.433 Sum_probs=21.8
Q ss_pred CCCCcEEEEeCCCCCCcHHHHHHHhh
Q 017897 175 EVIRRTVYVSDIDQQVTEEQLATLFL 200 (364)
Q Consensus 175 ~~~~~~lfV~nLp~~~te~~L~~~F~ 200 (364)
....++|.|.|||..+++++|++.++
T Consensus 49 ~vs~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 49 GVSKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred cccCCEEEEeCCCCCCChhhheeeEE
Confidence 34578999999999999999997654
No 220
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=60.88 E-value=22 Score=34.63 Aligned_cols=63 Identities=16% Similarity=0.152 Sum_probs=49.7
Q ss_pred CceEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccCCCCeeEEEEEecCHHHHHHHHhcCCCeeC
Q 017897 274 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALNCSGAVLG 341 (364)
Q Consensus 274 ~~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~e~A~~Al~lng~~~~ 341 (364)
-.-.|-|.++|...-.+||...|+.|-+.=-+|..+-|. .||-.|.+...|..||.|....+.
T Consensus 390 lpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-----halaVFss~~~AaeaLt~kh~~lK 452 (528)
T KOG4483|consen 390 LPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-----HALAVFSSVNRAAEALTLKHDWLK 452 (528)
T ss_pred ccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-----eeEEeecchHHHHHHhhccCceEE
Confidence 346888999999999999999999983345566666664 799999999999999986443433
No 221
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=49.41 E-value=22 Score=28.60 Aligned_cols=48 Identities=19% Similarity=0.186 Sum_probs=27.4
Q ss_pred EEEEeCCCCC---------CCHHHHHHHhhhcCCceeEEEEeccCCCCeeEEEEEecCH
Q 017897 277 TIYCTNIDKK---------VTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMA 326 (364)
Q Consensus 277 ~l~V~nLp~~---------~tee~L~~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~ 326 (364)
++.|-|++.. .+-++|++.|..| ..+ .++.+.+...++|+++|.|...
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f-~p~-kv~~l~~~~gh~g~aiv~F~~~ 66 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEF-NPL-KVKPLYGKQGHTGFAIVEFNKD 66 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH----S-EEEEEEETTEEEEEEEEE--SS
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhc-CCc-eeEECcCCCCCcEEEEEEECCC
Confidence 4556666432 3557899999997 655 4666666656889999999873
No 222
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=47.51 E-value=23 Score=32.99 Aligned_cols=46 Identities=7% Similarity=0.174 Sum_probs=35.5
Q ss_pred EEEEeCCCCCCcHHHHHHHhhcCCCe-eEEEEecCCCCCceEEEEEeCCHH
Q 017897 180 TVYVSDIDQQVTEEQLATLFLTCGQV-VDCRICGDPNSVLRFAFVEFTDEE 229 (364)
Q Consensus 180 ~lfV~nLp~~~te~~L~~~F~~~G~i-~~~~i~~d~~~~rG~aFV~F~~~~ 229 (364)
-|+++|||.++--.+|+..+.+.|.+ .++.+- .++|-||.+|.+..
T Consensus 332 di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswk----g~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 332 DIKLTNLSRDIRVKDLKSELRKRECTPMSISWK----GHFGKCFLHFGNRK 378 (396)
T ss_pred ceeeccCccccchHHHHHHHHhcCCCceeEeee----cCCcceeEecCCcc
Confidence 49999999999999999999987754 333332 24578999997643
No 223
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=47.21 E-value=74 Score=24.05 Aligned_cols=52 Identities=23% Similarity=0.279 Sum_probs=39.5
Q ss_pred CCCCCCCHHHHHHHhhhcCC-ceeEEEEeccCCCCeeEEEEEecCHHHHHHHHh
Q 017897 282 NIDKKVTQGDIKLFFESVCG-EVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN 334 (364)
Q Consensus 282 nLp~~~tee~L~~~F~~~~G-~I~~v~i~~d~~~~kg~afV~F~~~e~A~~Al~ 334 (364)
-.+...+..+|++.++..|| .|.+|....-+... --|||++..-+.|.....
T Consensus 27 ~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~~-KKA~V~L~~g~~A~~va~ 79 (84)
T PRK14548 27 IVDRRATKPDIKRAVEELFDVKVEKVNTLITPKGE-KKAYVKLAEEYDAEEIAS 79 (84)
T ss_pred EECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCc-EEEEEEeCCCCcHHHHHH
Confidence 35778999999999999778 78888776654322 269999998888876544
No 224
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=46.90 E-value=15 Score=23.00 Aligned_cols=17 Identities=12% Similarity=0.374 Sum_probs=10.8
Q ss_pred ccccHHHHHHHHhccCC
Q 017897 84 KDCEMRDLVDMLSKLNP 100 (364)
Q Consensus 84 ~~~~~~~L~~~Fs~~G~ 100 (364)
-++++.+|++.|.+++.
T Consensus 19 ~Dtd~~~Lk~vF~~i~~ 35 (36)
T PF11411_consen 19 VDTDEDQLKEVFNRIKK 35 (36)
T ss_dssp S---HHHHHHHHHCS--
T ss_pred ccCCHHHHHHHHHHhcc
Confidence 46789999999998764
No 225
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=46.74 E-value=35 Score=24.17 Aligned_cols=27 Identities=19% Similarity=0.378 Sum_probs=20.2
Q ss_pred HHHHHHHHhccCCcceEEecCCCCCCc
Q 017897 88 MRDLVDMLSKLNPMAAEFVPPSLANGQ 114 (364)
Q Consensus 88 ~~~L~~~Fs~~G~i~~v~v~~d~~t~~ 114 (364)
.++|++.|+.+|+|.=+.|-.-..+..
T Consensus 8 ~~~iR~~fs~lG~I~vLYvn~~eS~~~ 34 (62)
T PF15513_consen 8 TAEIRQFFSQLGEIAVLYVNPYESDED 34 (62)
T ss_pred HHHHHHHHHhcCcEEEEEEcccccCCC
Confidence 368999999999998777655444443
No 226
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=46.19 E-value=84 Score=23.31 Aligned_cols=56 Identities=25% Similarity=0.270 Sum_probs=40.3
Q ss_pred EEEeCCCCCCCHHHHHHHhhhcCC-ceeEEEEeccCCCCeeEEEEEecCHHHHHHHHh
Q 017897 278 IYCTNIDKKVTQGDIKLFFESVCG-EVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN 334 (364)
Q Consensus 278 l~V~nLp~~~tee~L~~~F~~~~G-~I~~v~i~~d~~~~kg~afV~F~~~e~A~~Al~ 334 (364)
-|+-..+...+..+|++.++..|| .|.+|..+.-+..-+ -|||++..-+.|...-.
T Consensus 16 ~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~~~K-KA~VtL~~g~~a~~va~ 72 (77)
T TIGR03636 16 KLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPRGEK-KAYVKLAEEYAAEEIAS 72 (77)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCce-EEEEEECCCCcHHHHHH
Confidence 344446888999999999998777 677877665443222 59999988777766543
No 227
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=43.33 E-value=3.3 Score=40.56 Aligned_cols=81 Identities=6% Similarity=-0.134 Sum_probs=60.9
Q ss_pred eEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccC--CCCeeEEEEEecCHHHHHHHHh-cCCCeeCCeeeEEeecCC
Q 017897 276 RTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSPSKT 352 (364)
Q Consensus 276 ~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~--~~~kg~afV~F~~~e~A~~Al~-lng~~~~g~~l~V~~ak~ 352 (364)
...++..+|...+++++.-+|+.| |.|..+.+.+.. +-.+-.+||+-.. .+|..++. +.-..+.|..+++..+..
T Consensus 4 ~~~~l~d~~~~~~~~~~~~~~~d~-~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~~~ 81 (572)
T KOG4365|consen 4 MKKSLKDSVASNNKDQNSMKHEDP-SIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVSPS 81 (572)
T ss_pred hhhhHhhcccccccchhhhhccCC-cceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcCch
Confidence 455778899999999999999997 999888777654 3445578887655 56777777 777777888888888766
Q ss_pred CCCCCC
Q 017897 353 PVRPRA 358 (364)
Q Consensus 353 ~~~~~~ 358 (364)
..-.|.
T Consensus 82 s~~~r~ 87 (572)
T KOG4365|consen 82 SSEKRS 87 (572)
T ss_pred hhhhhh
Confidence 554443
No 228
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=41.05 E-value=21 Score=31.01 Aligned_cols=74 Identities=19% Similarity=0.211 Sum_probs=49.5
Q ss_pred eEEEEeCCCCCCCH-HHHH----HHhhhcCCceeEEEEeccCCCCeeEEEEEecCHHHHHHHHh-cCCCeeCCe-eeEEe
Q 017897 276 RTIYCTNIDKKVTQ-GDIK----LFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSL-PIRVS 348 (364)
Q Consensus 276 ~~l~V~nLp~~~te-e~L~----~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~e~A~~Al~-lng~~~~g~-~l~V~ 348 (364)
.++.+.+++..+.. ...+ .+|.+| -+..-..+++ +.+..-|.|.+++.|..|.. +++..|.|+ .++.-
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~-n~~~~fq~lr----sfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~y 85 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQI-NEDATFQLLR----SFRRVRINFSNPEAAADARIKLHSTSFNGKNELKLY 85 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhh-CcchHHHHHH----hhceeEEeccChhHHHHHHHHhhhcccCCCceEEEE
Confidence 56777778775433 2333 344433 3322222333 44577889999999999998 999999998 88888
Q ss_pred ecCCCC
Q 017897 349 PSKTPV 354 (364)
Q Consensus 349 ~ak~~~ 354 (364)
++++--
T Consensus 86 faQ~~~ 91 (193)
T KOG4019|consen 86 FAQPGH 91 (193)
T ss_pred EccCCC
Confidence 887643
No 229
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=40.91 E-value=64 Score=30.09 Aligned_cols=48 Identities=15% Similarity=0.153 Sum_probs=35.9
Q ss_pred CceEEEEeCCCCCCCHHHHHHHhhhcCCce-eEEEEeccCCCCeeEEEEEecCH
Q 017897 274 CSRTIYCTNIDKKVTQGDIKLFFESVCGEV-QRLRLLGDYQHSTRIAFVEFAMA 326 (364)
Q Consensus 274 ~~~~l~V~nLp~~~tee~L~~~F~~~~G~I-~~v~i~~d~~~~kg~afV~F~~~ 326 (364)
...-||++||+..+.-.||+..+.+. |.+ .++.. +| +.|-||++|-+.
T Consensus 329 ~~~di~~~nl~rd~rv~dlk~~lr~~-~~~pm~isw---kg-~~~k~flh~~~~ 377 (396)
T KOG4410|consen 329 AKTDIKLTNLSRDIRVKDLKSELRKR-ECTPMSISW---KG-HFGKCFLHFGNR 377 (396)
T ss_pred cccceeeccCccccchHHHHHHHHhc-CCCceeEee---ec-CCcceeEecCCc
Confidence 34679999999999999999999986 543 33333 22 456799999763
No 230
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.10 E-value=1.1e+02 Score=31.49 Aligned_cols=76 Identities=20% Similarity=0.241 Sum_probs=57.5
Q ss_pred CCCcEEEEeCCCCC-CcHHHHHHHhhcC----CCeeEEEEecCC-C---------C-C----------------------
Q 017897 176 VIRRTVYVSDIDQQ-VTEEQLATLFLTC----GQVVDCRICGDP-N---------S-V---------------------- 217 (364)
Q Consensus 176 ~~~~~lfV~nLp~~-~te~~L~~~F~~~----G~i~~~~i~~d~-~---------~-~---------------------- 217 (364)
..++.|-|-|+.|+ +.-.+|.-+|..| |.|.+|.|+... + . +
T Consensus 172 ~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~~ 251 (650)
T KOG2318|consen 172 EETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEEE 251 (650)
T ss_pred cccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhhh
Confidence 34678999999976 6678999999866 589999986421 1 0 0
Q ss_pred ----------------ceEEEEEeCCHHHHHHHHH-ccccccCC--eeEEEee
Q 017897 218 ----------------LRFAFVEFTDEEGARAALS-LAGTMLGF--YPVRVLP 251 (364)
Q Consensus 218 ----------------rG~aFV~F~~~~~A~~al~-l~g~~l~g--~~i~V~~ 251 (364)
.=||.|+|.+.+.|.+..+ ++|..+.. ..|.+.+
T Consensus 252 ~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRF 304 (650)
T KOG2318|consen 252 DVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRF 304 (650)
T ss_pred hHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeee
Confidence 1289999999999999998 99999874 4555544
No 231
>TIGR02542 B_forsyth_147 Bacteroides forsythus 147-residue repeat. The longest predicted protein in Bacteroides forsythus ATCC 43037 is over 3000 residues long and lacks homology to other known proteins. Immediately after the signal sequence are four tandem repeats, approximately 147 residues long. This model describes that repeat. This model describes that repeat.
Probab=35.87 E-value=98 Score=24.87 Aligned_cols=113 Identities=18% Similarity=0.259 Sum_probs=61.6
Q ss_pred CCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHH-Hccccc--cCCeeEEEeeCCCCCCCCCCC
Q 017897 186 IDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAAL-SLAGTM--LGFYPVRVLPSKTAIAPVNPT 262 (364)
Q Consensus 186 Lp~~~te~~L~~~F~~~G~i~~~~i~~d~~~~rG~aFV~F~~~~~A~~al-~l~g~~--l~g~~i~V~~a~~~~~~~~~~ 262 (364)
||+-++ .|.++|+.-|+|.++..+.. |.+ ..|+ .++|.. +.|. |+|.-....
T Consensus 11 lPPYTn--KLSDYfeSPGKI~svItvtq-----------ypd----ndal~~~~G~lE~vDg~-i~IGs~q~~------- 65 (145)
T TIGR02542 11 LPPYTN--KLSDYFESPGKIQSVITVTQ-----------YPD----NDALLYVHGTLEQVDGN-IRIGSGQTP------- 65 (145)
T ss_pred cCCccc--hhhHHhcCCCceEEEEEEec-----------cCC----chhhheeeeehhhccCc-EEEccCCCc-------
Confidence 666543 68899999999998866542 221 1222 245533 3344 555543210
Q ss_pred CCCCCccccccCceEEEEeCCCCCCCHHHHHHHhhhc--CCceeEEEEeccC--CCCeeEEEEEecCHH
Q 017897 263 FLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESV--CGEVQRLRLLGDY--QHSTRIAFVEFAMAE 327 (364)
Q Consensus 263 ~~~~~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~~--~G~I~~v~i~~d~--~~~kg~afV~F~~~e 327 (364)
.+..-+..+..+..+| -|..+|-.+|+++|.+- |-.|.+=.+.+|. ..+-..||.-|....
T Consensus 66 -~sV~i~gTPsgnnv~F---~PYTlT~~e~r~iF~Epm~YQGITReQV~rdGLP~GsYRiCFrL~~~~~ 130 (145)
T TIGR02542 66 -ASVRIQGTPSGNNVIF---PPYTLTYNELRQIFREPMVYQGITREQVQRDGLPEGSYRICFRLFNATQ 130 (145)
T ss_pred -ccEEEecCCCCCceec---CceeeeHHHHHHHHhhhhhhccccHHHHhhcCCCCCceEEEEEEeccch
Confidence 0000011122233444 46789999999999852 1344444444442 235558888887653
No 232
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=34.77 E-value=54 Score=31.83 Aligned_cols=66 Identities=20% Similarity=0.214 Sum_probs=47.4
Q ss_pred CCcEEEEeCCCCCCcHHHHHHHhhcCCC-eeEEEEec-CCC---CCceEEEEEeCCHHHHHHHHH-cccccc
Q 017897 177 IRRTVYVSDIDQQVTEEQLATLFLTCGQ-VVDCRICG-DPN---SVLRFAFVEFTDEEGARAALS-LAGTML 242 (364)
Q Consensus 177 ~~~~lfV~nLp~~~te~~L~~~F~~~G~-i~~~~i~~-d~~---~~rG~aFV~F~~~~~A~~al~-l~g~~l 242 (364)
....+.|..||+..++++|.+-...+-. +....+.. +.. .-.+.+||.|..+++...-.. ++|+.+
T Consensus 6 ~~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~if 77 (376)
T KOG1295|consen 6 AKVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIF 77 (376)
T ss_pred cceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEE
Confidence 3577899999999999999988877643 33333332 111 126789999999999777776 888764
No 233
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=30.41 E-value=1.2e+02 Score=23.06 Aligned_cols=49 Identities=24% Similarity=0.312 Sum_probs=31.3
Q ss_pred CcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCC
Q 017897 178 RRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTD 227 (364)
Q Consensus 178 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~~~~rG~aFV~F~~ 227 (364)
..-||||+++..+-+.-...+.+..+.-.-+-+..+.+ ..||+|-+..+
T Consensus 25 ~~GVyVg~~s~rVRe~lW~~v~~~~~~G~a~m~~~~~n-eqG~~~~t~G~ 73 (86)
T PF09707_consen 25 RPGVYVGNVSARVRERLWERVTEWIGDGSAVMVWSDNN-EQGFDFRTLGD 73 (86)
T ss_pred CCCcEEcCCCHHHHHHHHHHHHhhCCCccEEEEEccCC-CCCEEEEEeCC
Confidence 45699999988776655444555444444444444444 67999988843
No 234
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=26.74 E-value=1.3e+02 Score=24.66 Aligned_cols=78 Identities=10% Similarity=0.012 Sum_probs=46.1
Q ss_pred CeEEeeecccCCCCCccccccchhhhhhcCCC-CCccccccCCcccccC----CC--CCcEEEEeCCCCC-CcHHHHHHH
Q 017897 127 GFGYTNNFIMHTDGTANTNGHTTTRRKRNGYS-QGKRRMNCRTSNAQQD----EV--IRRTVYVSDIDQQ-VTEEQLATL 198 (364)
Q Consensus 127 GfaFV~f~~~~~~~~~~~~a~~~~a~~~~~~~-~g~~~~~~~~~~~~~~----~~--~~~~lfV~nLp~~-~te~~L~~~ 198 (364)
|+..+.|.+ .. |+.+ ++...... .+.. +....-.+... .. ...=|-|.|||.. .+++-|+.+
T Consensus 56 ~~fl~~F~~-~~------d~~~--vl~~~p~~~~~~~-~~l~~W~~~~~~~~~~~~~~~vWVri~glP~~~~~~~~~~~i 125 (153)
T PF14111_consen 56 NLFLFQFES-EE------DRQR--VLKGGPWNFNGHF-LILQRWSPDFNPSEVKFEHIPVWVRIYGLPLHLWSEEILKAI 125 (153)
T ss_pred CeEEEEEEe-cc------ceeE--EEecccccccccc-hhhhhhcccccccccceeccchhhhhccCCHHHhhhHHHHHH
Confidence 778888988 66 5666 66544333 2322 11111110011 11 1112667899987 566788999
Q ss_pred hhcCCCeeEEEEecCC
Q 017897 199 FLTCGQVVDCRICGDP 214 (364)
Q Consensus 199 F~~~G~i~~~~i~~d~ 214 (364)
-+.+|.+.++......
T Consensus 126 ~~~iG~~i~vD~~t~~ 141 (153)
T PF14111_consen 126 GSKIGEPIEVDENTLK 141 (153)
T ss_pred HHhcCCeEEEEcCCCC
Confidence 9999999988766543
No 235
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=25.99 E-value=2.5e+02 Score=21.20 Aligned_cols=55 Identities=15% Similarity=0.140 Sum_probs=41.2
Q ss_pred EEEEeCCCCCCcHHHHHHHhhc-CC-CeeEEEEecCCCCCceEEEEEeCCHHHHHHHH
Q 017897 180 TVYVSDIDQQVTEEQLATLFLT-CG-QVVDCRICGDPNSVLRFAFVEFTDEEGARAAL 235 (364)
Q Consensus 180 ~lfV~nLp~~~te~~L~~~F~~-~G-~i~~~~i~~d~~~~rG~aFV~F~~~~~A~~al 235 (364)
+-|+--++...+..+|++.++. || .|.+|+.+.-+. ..-=|||++...+.|....
T Consensus 22 n~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~-~~KKA~V~L~~g~~A~~va 78 (84)
T PRK14548 22 NKLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPK-GEKKAYVKLAEEYDAEEIA 78 (84)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC-CcEEEEEEeCCCCcHHHHH
Confidence 4555667899999999999986 56 678887766553 2236999999888887764
No 236
>PF14893 PNMA: PNMA
Probab=23.88 E-value=65 Score=30.97 Aligned_cols=51 Identities=18% Similarity=0.191 Sum_probs=32.7
Q ss_pred CCcEEEEeCCCCCCcHHHHHHHhh----cCCCeeEEEEecCCCCCceEEEEEeCC
Q 017897 177 IRRTVYVSDIDQQVTEEQLATLFL----TCGQVVDCRICGDPNSVLRFAFVEFTD 227 (364)
Q Consensus 177 ~~~~lfV~nLp~~~te~~L~~~F~----~~G~i~~~~i~~d~~~~rG~aFV~F~~ 227 (364)
..+.|.|.+||.++++++|++.+. ..|...-.--+..+..+.--++|+|..
T Consensus 17 ~~r~lLv~giP~dc~~~ei~e~l~~~l~plg~yrvl~~~f~~~~~~~aalve~~e 71 (331)
T PF14893_consen 17 PQRALLVLGIPEDCEEAEIEEALQAALSPLGRYRVLGKMFRREENAKAALVEFAE 71 (331)
T ss_pred hhhhheeecCCCCCCHHHHHHHHHHhhcccccceehhhHhhhhcccceeeeeccc
Confidence 357799999999999999988765 445432221111222223478888875
No 237
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=23.23 E-value=1.8e+02 Score=20.91 Aligned_cols=59 Identities=19% Similarity=0.161 Sum_probs=40.4
Q ss_pred HHHHHHhhcCC-CeeEEEEecCCC--CCceEEEEEeCCHHHHHHHHHccccccCCeeEEEeeCC
Q 017897 193 EQLATLFLTCG-QVVDCRICGDPN--SVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSK 253 (364)
Q Consensus 193 ~~L~~~F~~~G-~i~~~~i~~d~~--~~rG~aFV~F~~~~~A~~al~l~g~~l~g~~i~V~~a~ 253 (364)
++|.+.|...| .|..+.-+..+. .....-||+..-..+...++. =..+.+..|.|++..
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~i~~--Ik~l~~~~V~vE~~~ 63 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKEIYK--IKTLCGQRVKVERPR 63 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccceee--hHhhCCeEEEEecCC
Confidence 57888888888 677777776652 245678888876555333333 335788899998864
No 238
>PRK11558 putative ssRNA endonuclease; Provisional
Probab=23.18 E-value=1.5e+02 Score=23.07 Aligned_cols=49 Identities=18% Similarity=0.228 Sum_probs=28.7
Q ss_pred CcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCC
Q 017897 178 RRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTD 227 (364)
Q Consensus 178 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~~~~rG~aFV~F~~ 227 (364)
..-||||+++..+-+.--..+-+.++.=.-+-+..+.+ -.||+|-++.+
T Consensus 27 ~~GVyVg~~S~rVRd~lW~~v~~~~~~G~avmv~~~~~-eqG~~~~t~G~ 75 (97)
T PRK11558 27 RAGVYVGDVSRRIREMIWQQVTQLAEEGNVVMAWATNT-ESGFEFQTFGE 75 (97)
T ss_pred CCCcEEcCCCHHHHHHHHHHHHHhCCCCcEEEEEcCCC-CCCcEEEecCC
Confidence 45699999887666543333444444422233334433 34999988875
No 239
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=21.25 E-value=2.5e+02 Score=18.42 Aligned_cols=42 Identities=17% Similarity=0.300 Sum_probs=30.7
Q ss_pred HHHHHHhhcCC-CeeEEEEecCCCCCceEEEEEeCCHHHHHHHH
Q 017897 193 EQLATLFLTCG-QVVDCRICGDPNSVLRFAFVEFTDEEGARAAL 235 (364)
Q Consensus 193 ~~L~~~F~~~G-~i~~~~i~~d~~~~rG~aFV~F~~~~~A~~al 235 (364)
.++...|.+.| .|..+.+.... ..++...+.+++.+.|.+++
T Consensus 13 ~~i~~~l~~~~inI~~~~~~~~~-~~~~~~~~~v~~~~~a~~~l 55 (56)
T cd04889 13 AEVTEILAEAGINIKAISIAETR-GEFGILRLIFSDPERAKEVL 55 (56)
T ss_pred HHHHHHHHHcCCCEeeEEEEEcc-CCcEEEEEEECCHHHHHHHh
Confidence 45667778776 68887766553 34678888889988888776
No 240
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=20.98 E-value=1.6e+02 Score=27.76 Aligned_cols=76 Identities=16% Similarity=0.246 Sum_probs=57.7
Q ss_pred ceEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccC---------CCCeeEEEEEecCHHHHHHHHh-----cCC--C
Q 017897 275 SRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY---------QHSTRIAFVEFAMAESAIAALN-----CSG--A 338 (364)
Q Consensus 275 ~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~---------~~~kg~afV~F~~~e~A~~Al~-----lng--~ 338 (364)
.|.|...|+..+++--.+...|-+| |.|++|.++.+. .+......+.|-+++.+..--. |+. .
T Consensus 15 TRSLLfeNv~~sidLh~Fl~~fv~~-~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~ 93 (309)
T PF10567_consen 15 TRSLLFENVNNSIDLHSFLTKFVKF-GPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKT 93 (309)
T ss_pred eHHHHHhhccccccHHHHHHHhhcc-CceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHH
Confidence 5788899999999888888889996 999999999764 1244578899999888765443 332 3
Q ss_pred eeCCeeeEEeecC
Q 017897 339 VLGSLPIRVSPSK 351 (364)
Q Consensus 339 ~~~g~~l~V~~ak 351 (364)
.+....|.|+|..
T Consensus 94 ~L~S~~L~lsFV~ 106 (309)
T PF10567_consen 94 KLKSESLTLSFVS 106 (309)
T ss_pred hcCCcceeEEEEE
Confidence 6677777777764
No 241
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=20.84 E-value=80 Score=29.34 Aligned_cols=61 Identities=16% Similarity=0.185 Sum_probs=0.0
Q ss_pred eeecccCCCCCccccccchhhhhhcCCCCCccccccCCcccccCCCCCcEEEEeCCCCCC------------cHHHHHHH
Q 017897 131 TNNFIMHTDGTANTNGHTTTRRKRNGYSQGKRRMNCRTSNAQQDEVIRRTVYVSDIDQQV------------TEEQLATL 198 (364)
Q Consensus 131 V~f~~~~~~~~~~~~a~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~------------te~~L~~~ 198 (364)
+.|-+.+. +.+--.. +........|.+ +.+|++.+||-.+ +++-|+..
T Consensus 122 idfpsrhd---wdd~fm~--~kdmdemkpger---------------pdti~la~ip~kwf~lkedg~~dlpse~rlr~a 181 (445)
T KOG2891|consen 122 IDFPSRHD---WDDFFMD--AKDMDEMKPGER---------------PDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKA 181 (445)
T ss_pred CCCCcccc---hHHHHhh--hhhhhccCCCCC---------------CCceeecCCcceeeeecccccccCChHHHHHHH
Q ss_pred hhcCCCeeEEEEe
Q 017897 199 FLTCGQVVDCRIC 211 (364)
Q Consensus 199 F~~~G~i~~~~i~ 211 (364)
|+.||.|..|.|+
T Consensus 182 ~eafg~ir~vdip 194 (445)
T KOG2891|consen 182 FEAFGEIRNVDIP 194 (445)
T ss_pred HHHhccceecCCc
No 242
>PRK05738 rplW 50S ribosomal protein L23; Reviewed
Probab=20.53 E-value=1.9e+02 Score=22.13 Aligned_cols=36 Identities=22% Similarity=0.304 Sum_probs=26.9
Q ss_pred EEEeCCCCCCCHHHHHHHhhhcCC-ceeEEEEeccCC
Q 017897 278 IYCTNIDKKVTQGDIKLFFESVCG-EVQRLRLLGDYQ 313 (364)
Q Consensus 278 l~V~nLp~~~tee~L~~~F~~~~G-~I~~v~i~~d~~ 313 (364)
-|+--.+..++..+|++.++..|| .|.+|..+.-++
T Consensus 22 ~~~F~V~~~a~K~eIK~aie~lf~VkV~~VnT~~~~g 58 (92)
T PRK05738 22 KYVFEVAPDATKPEIKAAVEKLFGVKVESVNTLNVKG 58 (92)
T ss_pred EEEEEECCCCCHHHHHHHHHHHcCCceeEEEEEEeCC
Confidence 333346788999999999999878 677887665543
Done!