Query 017897
Match_columns 364
No_of_seqs 347 out of 2571
Neff 8.3
Searched_HMMs 29240
Date Mon Mar 25 06:41:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017897.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017897hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ghp_A U4/U6 snRNA-associated 100.0 3.6E-42 1.2E-46 322.5 21.3 241 75-353 42-291 (292)
2 3smz_A Protein raver-1, ribonu 100.0 7.4E-42 2.5E-46 319.1 21.9 236 75-355 23-266 (284)
3 4f02_A Polyadenylate-binding p 100.0 2.8E-34 9.6E-39 257.2 21.0 164 177-353 14-181 (213)
4 3md3_A Nuclear and cytoplasmic 100.0 1.9E-33 6.4E-38 240.2 21.6 161 179-352 1-166 (166)
5 1l3k_A Heterogeneous nuclear r 100.0 3.4E-33 1.2E-37 245.7 22.0 176 174-358 9-188 (196)
6 1fxl_A Paraneoplastic encephal 100.0 4.5E-32 1.5E-36 231.8 21.5 158 178-350 2-167 (167)
7 2qfj_A FBP-interacting repress 100.0 3.2E-32 1.1E-36 243.1 21.4 178 177-358 27-210 (216)
8 1b7f_A Protein (SXL-lethal pro 100.0 4.3E-32 1.5E-36 232.6 20.1 159 177-350 2-168 (168)
9 2cjk_A Nuclear polyadenylated 100.0 1.2E-32 4E-37 236.1 14.7 161 177-353 2-166 (167)
10 3nmr_A Cugbp ELAV-like family 100.0 1.2E-31 3.9E-36 231.3 20.0 161 177-351 2-175 (175)
11 3tyt_A Heterogeneous nuclear r 100.0 3.8E-31 1.3E-35 235.6 20.4 170 177-350 3-204 (205)
12 1fje_B Nucleolin RBD12, protei 100.0 1.2E-31 4.3E-36 231.7 13.7 163 174-353 9-174 (175)
13 2g4b_A Splicing factor U2AF 65 100.0 1.1E-30 3.9E-35 224.7 19.7 155 177-350 3-171 (172)
14 2yh0_A Splicing factor U2AF 65 100.0 2.6E-30 9E-35 227.5 21.9 174 177-355 3-196 (198)
15 2adc_A Polypyrimidine tract-bi 100.0 3E-30 1E-34 233.6 21.1 175 173-354 29-229 (229)
16 4f02_A Polyadenylate-binding p 100.0 1.2E-31 4.2E-36 240.1 10.8 157 76-254 17-180 (213)
17 3pgw_A U1-A; protein-RNA compl 100.0 7.6E-30 2.6E-34 237.5 22.8 173 175-352 6-282 (282)
18 1qm9_A Polypyrimidine tract-bi 100.0 2E-30 6.8E-35 228.9 16.9 171 177-354 2-198 (198)
19 2ghp_A U4/U6 snRNA-associated 100.0 4.4E-30 1.5E-34 240.2 19.2 161 174-356 37-200 (292)
20 3smz_A Protein raver-1, ribonu 100.0 1E-28 3.6E-33 230.0 21.9 153 177-355 21-177 (284)
21 2cjk_A Nuclear polyadenylated 100.0 6E-30 2E-34 219.2 10.6 158 75-254 4-165 (167)
22 3sde_A Paraspeckle component 1 100.0 1.4E-28 4.6E-33 227.0 20.1 155 174-353 18-179 (261)
23 3md3_A Nuclear and cytoplasmic 100.0 8.4E-29 2.9E-33 211.2 13.9 158 76-253 2-165 (166)
24 2qfj_A FBP-interacting repress 100.0 1.5E-28 5.2E-33 219.1 15.8 161 74-256 28-206 (216)
25 1l3k_A Heterogeneous nuclear r 100.0 1.4E-28 4.8E-33 216.1 13.6 160 73-254 12-182 (196)
26 1b7f_A Protein (SXL-lethal pro 100.0 1.5E-28 5.3E-33 210.4 12.9 158 75-252 4-168 (168)
27 3nmr_A Cugbp ELAV-like family 100.0 1.6E-28 5.6E-33 211.4 12.6 160 75-253 4-175 (175)
28 1fxl_A Paraneoplastic encephal 100.0 4.4E-28 1.5E-32 206.9 12.2 157 76-252 4-167 (167)
29 2g4b_A Splicing factor U2AF 65 99.9 6.8E-26 2.3E-30 194.7 13.0 151 75-252 5-171 (172)
30 3tyt_A Heterogeneous nuclear r 99.9 2.8E-26 9.4E-31 204.2 10.8 150 76-252 6-204 (205)
31 1fje_B Nucleolin RBD12, protei 99.9 2.1E-26 7E-31 198.9 7.8 154 74-254 13-173 (175)
32 2yh0_A Splicing factor U2AF 65 99.9 2.9E-26 9.8E-31 201.6 7.9 151 75-254 5-193 (198)
33 3pgw_A U1-A; protein-RNA compl 99.9 3.5E-25 1.2E-29 205.9 13.9 151 75-253 10-281 (282)
34 1qm9_A Polypyrimidine tract-bi 99.9 4.8E-25 1.6E-29 194.3 11.9 149 76-254 5-196 (198)
35 2adc_A Polypyrimidine tract-bi 99.9 1.4E-24 4.8E-29 196.2 13.8 150 75-254 35-227 (229)
36 3sde_A Paraspeckle component 1 99.9 3.4E-24 1.2E-28 197.5 12.5 148 75-254 23-178 (261)
37 2kn4_A Immunoglobulin G-bindin 99.9 2.1E-23 7.3E-28 177.5 15.3 146 207-354 2-151 (158)
38 4f25_A Polyadenylate-binding p 99.9 7.8E-23 2.7E-27 165.1 10.0 109 177-291 4-113 (115)
39 2i2y_A Fusion protein consists 99.9 1.5E-21 5.3E-26 164.7 14.1 141 209-354 4-149 (150)
40 2kn4_A Immunoglobulin G-bindin 99.8 7.2E-21 2.5E-25 161.8 9.4 132 103-255 2-150 (158)
41 4fxv_A ELAV-like protein 1; RN 99.8 2.2E-19 7.7E-24 140.8 11.4 78 274-352 18-98 (99)
42 4fxv_A ELAV-like protein 1; RN 99.8 2.6E-19 8.8E-24 140.5 10.7 78 177-254 18-98 (99)
43 4f25_A Polyadenylate-binding p 99.8 1.6E-18 5.5E-23 139.6 11.5 80 274-354 4-84 (115)
44 2i2y_A Fusion protein consists 99.8 1.4E-18 4.6E-23 146.6 8.7 115 127-254 14-147 (150)
45 2hvz_A Splicing factor, argini 99.8 2E-18 7E-23 135.4 9.0 99 179-284 1-100 (101)
46 2lxi_A RNA-binding protein 10; 99.8 1.4E-18 4.6E-23 134.1 7.6 79 276-355 2-85 (91)
47 2lea_A Serine/arginine-rich sp 99.8 1.6E-18 5.4E-23 143.7 8.2 122 220-357 6-131 (135)
48 1rk8_A CG8781-PA, CG8781-PA pr 99.7 5.2E-18 1.8E-22 145.4 11.5 135 223-358 11-157 (165)
49 2cqi_A Nucleolysin TIAR; RNA r 99.7 1.2E-17 4.1E-22 131.5 12.2 80 175-254 12-92 (103)
50 3s8s_A Histone-lysine N-methyl 99.7 1.1E-17 3.6E-22 133.8 11.9 80 273-353 4-86 (110)
51 3s8s_A Histone-lysine N-methyl 99.7 7.2E-18 2.5E-22 134.7 11.0 77 177-253 5-84 (110)
52 1whw_A Hypothetical protein ri 99.7 1.3E-17 4.4E-22 130.3 11.9 88 273-361 6-96 (99)
53 2dgo_A Cytotoxic granule-assoc 99.7 3.3E-17 1.1E-21 131.6 14.6 88 272-360 12-102 (115)
54 2cqi_A Nucleolysin TIAR; RNA r 99.7 2.5E-17 8.4E-22 129.7 13.6 85 273-358 13-98 (103)
55 3lqv_A PRE-mRNA branch site pr 99.7 2.7E-18 9.2E-23 138.0 8.1 103 175-301 5-108 (115)
56 2cq3_A RNA-binding protein 9; 99.7 2.4E-17 8.3E-22 129.7 13.4 82 174-255 11-93 (103)
57 1s79_A Lupus LA protein; RRM, 99.7 5.1E-18 1.7E-22 134.0 9.4 81 173-253 6-87 (103)
58 2lea_A Serine/arginine-rich sp 99.7 3.1E-18 1.1E-22 142.0 8.4 118 127-255 5-127 (135)
59 3bs9_A Nucleolysin TIA-1 isofo 99.7 1.8E-17 6.1E-22 126.2 11.7 79 274-353 5-86 (87)
60 2cq3_A RNA-binding protein 9; 99.7 3.5E-17 1.2E-21 128.9 13.6 85 272-357 12-97 (103)
61 2cpz_A CUG triplet repeat RNA- 99.7 2.3E-17 7.8E-22 132.6 12.8 85 272-357 22-109 (115)
62 2lxi_A RNA-binding protein 10; 99.7 3E-18 1E-22 132.2 7.1 77 178-254 1-82 (91)
63 2cq0_A Eukaryotic translation 99.7 2.3E-17 7.9E-22 129.9 12.4 85 272-357 12-99 (103)
64 2lkz_A RNA-binding protein 5; 99.7 3.8E-18 1.3E-22 132.6 7.5 80 273-353 7-95 (95)
65 3p5t_L Cleavage and polyadenyl 99.7 3.3E-18 1.1E-22 131.5 6.9 77 179-255 2-83 (90)
66 1x5t_A Splicing factor 3B subu 99.7 1.4E-17 4.9E-22 129.2 10.7 85 273-358 3-91 (96)
67 2d9p_A Polyadenylate-binding p 99.7 1.9E-17 6.5E-22 130.3 11.5 85 272-357 12-97 (103)
68 2lkz_A RNA-binding protein 5; 99.7 3.8E-18 1.3E-22 132.7 7.3 78 177-254 8-94 (95)
69 2dnh_A Bruno-like 5, RNA bindi 99.7 2.6E-17 8.8E-22 130.0 12.2 84 272-356 12-100 (105)
70 2cpf_A RNA binding motif prote 99.7 2.1E-17 7.2E-22 128.8 11.5 84 274-358 4-93 (98)
71 2dnz_A Probable RNA-binding pr 99.7 2.7E-17 9.4E-22 127.4 11.9 85 273-358 3-90 (95)
72 3md1_A Nuclear and cytoplasmic 99.7 3.5E-17 1.2E-21 123.4 12.1 77 276-353 2-81 (83)
73 2dgo_A Cytotoxic granule-assoc 99.7 5.3E-17 1.8E-21 130.4 13.6 84 173-256 10-96 (115)
74 3s7r_A Heterogeneous nuclear r 99.7 2.2E-17 7.5E-22 125.8 10.7 79 174-252 7-87 (87)
75 3p5t_L Cleavage and polyadenyl 99.7 3.7E-18 1.3E-22 131.2 6.4 81 276-357 2-87 (90)
76 2dgs_A DAZ-associated protein 99.7 4.4E-17 1.5E-21 127.3 12.4 81 175-255 7-89 (99)
77 2dgv_A HnRNP M, heterogeneous 99.7 2.2E-17 7.4E-22 127.2 10.5 83 273-356 6-89 (92)
78 2dgx_A KIAA0430 protein; RRM d 99.7 2.5E-17 8.4E-22 128.2 10.9 78 177-255 8-90 (96)
79 1x5s_A Cold-inducible RNA-bind 99.7 2.2E-17 7.4E-22 129.7 10.4 86 273-359 10-98 (102)
80 2do4_A Squamous cell carcinoma 99.7 3.9E-17 1.3E-21 127.9 11.8 83 272-355 14-98 (100)
81 2cqb_A Peptidyl-prolyl CIS-tra 99.7 1.8E-17 6.1E-22 130.2 9.9 85 273-358 10-97 (102)
82 2dgx_A KIAA0430 protein; RRM d 99.7 3.5E-17 1.2E-21 127.3 11.3 81 274-356 8-93 (96)
83 1sjq_A Polypyrimidine tract-bi 99.7 2.3E-17 7.8E-22 130.1 10.3 80 273-357 14-96 (105)
84 3md1_A Nuclear and cytoplasmic 99.7 3.3E-17 1.1E-21 123.6 10.8 76 179-254 2-80 (83)
85 2cq0_A Eukaryotic translation 99.7 3.7E-17 1.3E-21 128.7 11.5 82 174-255 11-95 (103)
86 2cpf_A RNA binding motif prote 99.7 2.5E-17 8.4E-22 128.4 10.4 79 177-255 4-88 (98)
87 2cqd_A RNA-binding region cont 99.7 7.2E-17 2.5E-21 129.9 13.5 88 272-361 14-104 (116)
88 2dgs_A DAZ-associated protein 99.7 4.3E-17 1.5E-21 127.3 11.8 84 273-357 8-93 (99)
89 2dgv_A HnRNP M, heterogeneous 99.7 3E-17 1E-21 126.4 10.6 80 176-255 6-86 (92)
90 2err_A Ataxin-2-binding protei 99.7 1.7E-17 5.7E-22 132.3 9.2 83 172-254 23-106 (109)
91 2d9p_A Polyadenylate-binding p 99.7 4.4E-17 1.5E-21 128.3 11.5 81 175-255 12-93 (103)
92 2dnz_A Probable RNA-binding pr 99.7 6.6E-17 2.2E-21 125.2 12.2 80 176-255 3-85 (95)
93 3mdf_A Peptidyl-prolyl CIS-tra 99.7 2.8E-17 9.4E-22 124.6 9.8 78 273-351 5-85 (85)
94 3bs9_A Nucleolysin TIA-1 isofo 99.7 2.8E-17 9.6E-22 125.1 9.9 78 177-254 5-85 (87)
95 1whw_A Hypothetical protein ri 99.7 5.8E-17 2E-21 126.5 11.9 80 176-255 6-88 (99)
96 1x4h_A RNA-binding protein 28; 99.7 4.8E-17 1.6E-21 129.7 11.6 88 272-360 12-108 (111)
97 3mdf_A Peptidyl-prolyl CIS-tra 99.7 3.4E-17 1.2E-21 124.1 10.0 78 176-253 5-85 (85)
98 2e5h_A Zinc finger CCHC-type a 99.7 4.1E-17 1.4E-21 126.1 10.6 79 175-253 13-94 (94)
99 2cqc_A Arginine/serine-rich sp 99.7 5E-17 1.7E-21 125.8 10.9 81 174-254 11-94 (95)
100 2do4_A Squamous cell carcinoma 99.7 7E-17 2.4E-21 126.4 11.8 80 175-254 14-95 (100)
101 2ywk_A Putative RNA-binding pr 99.7 3.6E-17 1.2E-21 126.7 9.9 79 175-253 13-93 (95)
102 2cqc_A Arginine/serine-rich sp 99.7 6.9E-17 2.4E-21 125.0 11.5 80 272-352 12-94 (95)
103 2x1f_A MRNA 3'-END-processing 99.7 5.6E-17 1.9E-21 126.0 11.0 80 275-355 2-84 (96)
104 2err_A Ataxin-2-binding protei 99.7 2.7E-17 9.2E-22 131.1 9.3 82 272-354 26-108 (109)
105 2fy1_A RNA-binding motif prote 99.7 5.7E-17 1.9E-21 130.7 11.3 83 274-357 6-90 (116)
106 1oo0_B CG8781-PA, drosophila Y 99.7 5.9E-17 2E-21 129.1 11.2 84 272-356 23-109 (110)
107 3ucg_A Polyadenylate-binding p 99.7 6.1E-17 2.1E-21 123.7 10.9 78 178-255 6-85 (89)
108 1sjq_A Polypyrimidine tract-bi 99.7 3.1E-17 1.1E-21 129.3 9.4 75 176-254 14-91 (105)
109 2cph_A RNA binding motif prote 99.7 7.2E-17 2.5E-21 127.8 11.6 85 272-357 12-101 (107)
110 1x5u_A Splicing factor 3B subu 99.7 7E-17 2.4E-21 127.5 11.5 82 174-255 11-95 (105)
111 2dnm_A SRP46 splicing factor; 99.7 4.5E-17 1.5E-21 128.2 10.3 82 174-255 9-93 (103)
112 2dnh_A Bruno-like 5, RNA bindi 99.7 1.1E-16 3.6E-21 126.4 12.5 80 176-255 13-97 (105)
113 2cph_A RNA binding motif prote 99.7 7.4E-17 2.5E-21 127.7 11.4 80 175-254 12-96 (107)
114 2do0_A HnRNP M, heterogeneous 99.7 1.6E-16 5.3E-21 127.4 13.5 82 273-355 13-96 (114)
115 2cpz_A CUG triplet repeat RNA- 99.7 7E-17 2.4E-21 129.7 11.3 81 175-255 22-105 (115)
116 1p27_B RNA-binding protein 8A; 99.7 7E-17 2.4E-21 127.7 11.0 82 272-354 20-104 (106)
117 2ywk_A Putative RNA-binding pr 99.7 8.4E-17 2.9E-21 124.6 11.1 79 273-352 14-94 (95)
118 1x5t_A Splicing factor 3B subu 99.7 6E-17 2E-21 125.7 10.2 78 177-254 4-85 (96)
119 2mss_A Protein (musashi1); RNA 99.7 2.1E-17 7.3E-22 122.3 7.3 73 180-252 1-75 (75)
120 2dnm_A SRP46 splicing factor; 99.7 5.7E-17 1.9E-21 127.6 10.1 82 273-355 11-95 (103)
121 1x5u_A Splicing factor 3B subu 99.7 7.4E-17 2.5E-21 127.3 10.8 84 273-357 13-99 (105)
122 2dhg_A TRNA selenocysteine ass 99.7 6.2E-17 2.1E-21 127.6 10.3 85 273-358 7-95 (104)
123 2fy1_A RNA-binding motif prote 99.7 1.3E-16 4.5E-21 128.6 12.4 80 176-255 5-86 (116)
124 2jrs_A RNA-binding protein 39; 99.7 8.5E-17 2.9E-21 128.0 11.1 82 272-354 23-107 (108)
125 3ns6_A Eukaryotic translation 99.7 1.8E-17 6.2E-22 130.0 7.0 78 176-253 4-91 (100)
126 2wbr_A GW182, gawky, LD47780P; 99.7 3.6E-17 1.2E-21 123.7 8.3 72 177-252 6-78 (89)
127 2dng_A Eukaryotic translation 99.7 1.9E-16 6.4E-21 124.7 12.8 83 273-357 13-97 (103)
128 2x1f_A MRNA 3'-END-processing 99.7 6.9E-17 2.4E-21 125.5 10.2 77 178-254 2-81 (96)
129 2la6_A RNA-binding protein FUS 99.7 9.7E-17 3.3E-21 125.4 11.0 80 174-253 9-99 (99)
130 2dgp_A Bruno-like 4, RNA bindi 99.7 1.1E-16 3.8E-21 126.5 11.4 85 272-357 10-100 (106)
131 2cqb_A Peptidyl-prolyl CIS-tra 99.7 6.8E-17 2.3E-21 126.9 10.0 80 176-255 10-92 (102)
132 1x5s_A Cold-inducible RNA-bind 99.7 7E-17 2.4E-21 126.8 10.0 81 175-255 9-92 (102)
133 2cpi_A CCR4-NOT transcription 99.7 4.9E-17 1.7E-21 130.0 9.3 79 177-255 14-101 (111)
134 4a8x_A RNA-binding protein wit 99.7 7.6E-17 2.6E-21 122.9 9.9 79 274-353 3-85 (88)
135 3ucg_A Polyadenylate-binding p 99.7 1.5E-16 5E-21 121.6 11.5 79 274-353 5-85 (89)
136 2e5h_A Zinc finger CCHC-type a 99.7 8.3E-17 2.8E-21 124.4 10.2 79 272-351 13-94 (94)
137 2div_A TRNA selenocysteine ass 99.7 7.6E-17 2.6E-21 125.9 10.1 80 176-255 7-94 (99)
138 2div_A TRNA selenocysteine ass 99.7 9.5E-17 3.2E-21 125.3 10.5 82 273-355 7-96 (99)
139 1p27_B RNA-binding protein 8A; 99.7 1.2E-16 4.1E-21 126.3 11.1 79 176-254 21-102 (106)
140 1wi8_A EIF-4B, eukaryotic tran 99.7 1.9E-16 6.6E-21 124.8 12.1 84 273-358 13-99 (104)
141 2ad9_A Polypyrimidine tract-bi 99.7 8.5E-17 2.9E-21 129.8 10.2 83 272-359 28-113 (119)
142 1x4h_A RNA-binding protein 28; 99.7 1.5E-16 5.2E-21 126.7 11.6 80 175-254 12-100 (111)
143 1u6f_A Tcubp1, RNA-binding pro 99.7 3.1E-16 1.1E-20 130.2 13.8 86 272-358 39-127 (139)
144 4a8x_A RNA-binding protein wit 99.7 7.7E-17 2.6E-21 122.8 9.3 78 177-254 3-84 (88)
145 1x4g_A Nucleolysin TIAR; struc 99.7 2.1E-16 7.1E-21 125.8 12.2 84 272-360 22-106 (109)
146 2jrs_A RNA-binding protein 39; 99.7 1.6E-16 5.4E-21 126.4 11.4 82 173-254 21-105 (108)
147 1x4a_A Splicing factor, argini 99.7 2.6E-16 8.8E-21 125.2 12.6 84 272-357 19-103 (109)
148 2cqd_A RNA-binding region cont 99.7 2.4E-16 8.1E-21 126.8 12.5 81 174-255 13-96 (116)
149 2cq1_A PTB-like protein L; RRM 99.7 2.2E-16 7.6E-21 124.0 12.0 81 272-357 12-95 (101)
150 2do0_A HnRNP M, heterogeneous 99.7 3.1E-16 1.1E-20 125.6 13.1 80 176-255 13-94 (114)
151 1s79_A Lupus LA protein; RRM, 99.7 6.4E-17 2.2E-21 127.6 8.9 79 273-352 9-88 (103)
152 2cpe_A RNA-binding protein EWS 99.7 1.6E-16 5.4E-21 127.2 11.2 85 272-357 12-107 (113)
153 3pgw_S U1-70K; protein-RNA com 99.7 2.7E-17 9.1E-22 161.9 8.1 158 194-355 8-184 (437)
154 2dng_A Eukaryotic translation 99.7 2.4E-16 8.1E-21 124.1 12.0 78 176-254 13-92 (103)
155 3pgw_S U1-70K; protein-RNA com 99.7 6E-17 2E-21 159.4 10.5 79 176-254 100-181 (437)
156 2khc_A Testis-specific RNP-typ 99.7 1.8E-16 6.3E-21 127.8 11.6 79 272-351 37-118 (118)
157 1x4b_A Heterogeneous nuclear r 99.7 2.6E-16 9.1E-21 126.5 12.4 88 272-360 24-113 (116)
158 2jwn_A Embryonic polyadenylate 99.7 1.5E-16 5E-21 129.5 11.0 85 272-357 33-119 (124)
159 3r27_A HnRNP L, heterogeneous 99.7 1.6E-16 5.4E-21 124.0 10.5 77 272-353 18-97 (100)
160 1wi8_A EIF-4B, eukaryotic tran 99.7 1.8E-16 6.2E-21 125.0 11.0 78 176-254 13-93 (104)
161 1x4a_A Splicing factor, argini 99.7 3E-16 1E-20 124.8 12.3 80 175-255 19-99 (109)
162 2krb_A Eukaryotic translation 99.7 5.1E-17 1.8E-21 122.2 7.4 71 179-249 2-80 (81)
163 2nlw_A Eukaryotic translation 99.7 1E-16 3.6E-21 126.7 9.6 79 175-253 12-98 (105)
164 2dgp_A Bruno-like 4, RNA bindi 99.7 1.3E-16 4.4E-21 126.2 10.0 82 174-255 9-96 (106)
165 3s7r_A Heterogeneous nuclear r 99.7 2.1E-16 7.2E-21 120.3 10.8 77 273-350 9-87 (87)
166 2dhg_A TRNA selenocysteine ass 99.7 1.9E-16 6.7E-21 124.7 11.0 81 175-255 6-90 (104)
167 2wbr_A GW182, gawky, LD47780P; 99.7 1.4E-16 4.9E-21 120.3 9.6 72 275-351 7-79 (89)
168 2jvr_A Nucleolar protein 3; RN 99.7 1E-16 3.6E-21 128.0 9.3 79 274-355 27-107 (111)
169 1oo0_B CG8781-PA, drosophila Y 99.7 1.5E-16 5.1E-21 126.7 10.1 79 176-254 24-105 (110)
170 2cpi_A CCR4-NOT transcription 99.7 1.2E-16 4.2E-21 127.6 9.6 83 273-356 13-104 (111)
171 1x4e_A RNA binding motif, sing 99.7 5.9E-17 2E-21 122.9 7.3 78 176-253 3-83 (85)
172 2la6_A RNA-binding protein FUS 99.7 1.9E-16 6.5E-21 123.7 10.4 79 272-351 10-99 (99)
173 2khc_A Testis-specific RNP-typ 99.7 9.5E-17 3.3E-21 129.5 8.9 79 175-253 37-118 (118)
174 2cqg_A TDP-43, TAR DNA-binding 99.7 6E-16 2.1E-20 121.7 13.3 87 272-360 12-100 (103)
175 3ulh_A THO complex subunit 4; 99.7 3.4E-16 1.2E-20 123.9 11.9 79 272-351 26-106 (107)
176 2dh8_A DAZ-associated protein 99.7 1.4E-16 4.7E-21 125.8 9.5 82 174-255 12-95 (105)
177 2cq1_A PTB-like protein L; RRM 99.7 3.6E-16 1.2E-20 122.8 11.8 74 177-254 14-90 (101)
178 3ulh_A THO complex subunit 4; 99.7 2.1E-16 7.1E-21 125.2 10.6 79 175-253 26-106 (107)
179 2cqg_A TDP-43, TAR DNA-binding 99.7 4.5E-16 1.5E-20 122.4 12.3 82 173-255 10-93 (103)
180 2kxn_B Transformer-2 protein h 99.7 1.9E-16 6.4E-21 130.1 10.5 81 174-254 42-125 (129)
181 3n9u_C Cleavage and polyadenyl 99.7 1.7E-16 5.8E-21 134.7 10.5 77 177-253 54-135 (156)
182 2hgl_A HNRPF protein, heteroge 99.7 1.1E-16 3.9E-21 132.5 9.1 80 174-253 40-123 (136)
183 1x4d_A Matrin 3; structural ge 99.7 1.4E-16 4.6E-21 125.3 9.0 80 273-357 13-96 (102)
184 2dnq_A RNA-binding protein 4B; 99.7 3.7E-16 1.3E-20 119.8 11.3 78 273-357 6-84 (90)
185 1x4d_A Matrin 3; structural ge 99.7 1.5E-16 5.1E-21 125.1 9.1 74 177-254 14-91 (102)
186 1h2v_Z 20 kDa nuclear CAP bind 99.7 5.1E-16 1.8E-20 131.5 13.1 85 272-357 36-123 (156)
187 1wez_A HnRNP H', FTP-3, hetero 99.7 1.1E-16 3.9E-21 126.0 8.4 80 175-255 12-92 (102)
188 2dnp_A RNA-binding protein 14; 99.7 4.4E-16 1.5E-20 119.4 11.5 81 272-359 6-87 (90)
189 2cpe_A RNA-binding protein EWS 99.7 2.3E-16 8E-21 126.2 10.3 82 174-255 11-103 (113)
190 2fc9_A NCL protein; structure 99.7 3.7E-16 1.3E-20 122.5 11.2 83 272-358 12-96 (101)
191 2rs2_A Musashi-1, RNA-binding 99.7 3.1E-16 1E-20 125.0 10.8 82 173-254 20-103 (109)
192 2kt5_A RNA and export factor-b 99.7 4.3E-16 1.5E-20 126.9 12.0 86 272-358 32-119 (124)
193 2hvz_A Splicing factor, argini 99.7 1.5E-16 5E-21 124.7 8.8 78 276-357 1-79 (101)
194 2ad9_A Polypyrimidine tract-bi 99.7 3E-16 1E-20 126.6 10.8 74 177-254 30-106 (119)
195 2dgt_A RNA-binding protein 30; 99.7 7E-16 2.4E-20 118.8 12.5 79 272-357 7-86 (92)
196 2dh8_A DAZ-associated protein 99.7 1.8E-16 6.3E-21 125.1 9.3 85 272-357 13-99 (105)
197 2jvo_A Nucleolar protein 3; nu 99.7 2.3E-16 8E-21 125.5 9.9 79 271-356 27-106 (108)
198 3ex7_B RNA-binding protein 8A; 99.7 1.6E-16 5.6E-21 129.6 9.2 85 272-357 19-106 (126)
199 3ns6_A Eukaryotic translation 99.7 3.9E-17 1.3E-21 128.1 5.3 78 275-353 6-93 (100)
200 2dnq_A RNA-binding protein 4B; 99.7 4.9E-16 1.7E-20 119.2 11.3 75 175-255 5-80 (90)
201 2cqp_A RNA-binding protein 12; 99.7 1.9E-16 6.7E-21 123.3 9.2 81 273-354 13-96 (98)
202 2kt5_A RNA and export factor-b 99.7 4.8E-16 1.6E-20 126.6 11.9 82 175-256 32-115 (124)
203 2dgw_A Probable RNA-binding pr 99.7 4.7E-16 1.6E-20 119.5 11.2 79 175-254 7-86 (91)
204 2kxn_B Transformer-2 protein h 99.7 2E-16 6.9E-21 130.0 9.4 81 272-353 43-126 (129)
205 2rs2_A Musashi-1, RNA-binding 99.7 3.7E-16 1.3E-20 124.5 10.7 82 272-354 22-105 (109)
206 2ytc_A PRE-mRNA-splicing facto 99.7 3.6E-16 1.2E-20 118.4 10.2 75 175-253 9-85 (85)
207 1uaw_A Mouse-musashi-1; RNP-ty 99.7 8.7E-17 3E-21 119.4 6.6 73 179-252 1-76 (77)
208 2db1_A Heterogeneous nuclear r 99.7 1.8E-16 6.2E-21 128.2 9.0 79 175-253 14-96 (118)
209 1x4g_A Nucleolysin TIAR; struc 99.7 4E-16 1.4E-20 124.1 10.8 77 175-255 22-99 (109)
210 1wf1_A RNA-binding protein RAL 99.7 2.6E-16 8.8E-21 125.4 9.7 78 273-357 25-104 (110)
211 2cpy_A RNA-binding protein 12; 99.7 1.5E-16 5.2E-21 127.7 8.3 80 175-254 12-93 (114)
212 2jvr_A Nucleolar protein 3; RN 99.7 1.6E-16 5.4E-21 127.0 8.3 78 175-254 25-104 (111)
213 2jwn_A Embryonic polyadenylate 99.7 3.3E-16 1.1E-20 127.5 10.3 79 177-255 35-115 (124)
214 3r27_A HnRNP L, heterogeneous 99.7 4.6E-16 1.6E-20 121.4 10.6 74 177-254 20-96 (100)
215 1wex_A Hypothetical protein (r 99.7 4.9E-16 1.7E-20 122.7 10.8 75 177-255 14-91 (104)
216 2nlw_A Eukaryotic translation 99.7 2.4E-16 8.3E-21 124.6 9.1 79 274-353 14-100 (105)
217 2ki2_A SS-DNA binding protein 99.7 6.1E-17 2.1E-21 124.2 5.4 81 276-358 2-85 (90)
218 1x4b_A Heterogeneous nuclear r 99.7 5E-16 1.7E-20 124.9 11.0 78 177-254 26-105 (116)
219 1x4c_A Splicing factor, argini 99.7 8E-16 2.7E-20 122.2 12.1 78 274-357 14-97 (108)
220 1x5o_A RNA binding motif, sing 99.7 5.3E-16 1.8E-20 124.3 11.1 80 174-253 21-110 (114)
221 2ki2_A SS-DNA binding protein 99.7 5.5E-17 1.9E-21 124.4 5.0 76 179-255 2-80 (90)
222 1u6f_A Tcubp1, RNA-binding pro 99.7 8.3E-16 2.8E-20 127.6 12.6 83 173-255 37-122 (139)
223 1why_A Hypothetical protein ri 99.7 4.7E-16 1.6E-20 121.0 10.4 78 272-354 14-94 (97)
224 2dis_A Unnamed protein product 99.7 6.2E-16 2.1E-20 122.8 11.2 79 177-255 7-92 (109)
225 1wg5_A Heterogeneous nuclear r 99.7 2.9E-16 9.9E-21 124.0 9.2 80 175-254 12-93 (104)
226 2dis_A Unnamed protein product 99.7 6.3E-16 2.1E-20 122.8 11.1 82 273-355 6-94 (109)
227 1x4c_A Splicing factor, argini 99.7 1.1E-15 3.8E-20 121.4 12.6 74 176-254 13-92 (108)
228 3n9u_C Cleavage and polyadenyl 99.7 4.3E-16 1.5E-20 132.2 10.8 78 274-352 54-136 (156)
229 1p1t_A Cleavage stimulation fa 99.7 3.1E-16 1.1E-20 123.4 9.2 78 177-254 7-87 (104)
230 2dgu_A Heterogeneous nuclear r 99.7 7.2E-16 2.5E-20 121.3 11.3 81 273-360 9-90 (103)
231 2mss_A Protein (musashi1); RNA 99.7 1.5E-16 5.2E-21 117.6 6.9 73 277-350 1-75 (75)
232 1wez_A HnRNP H', FTP-3, hetero 99.7 2.2E-16 7.6E-21 124.3 8.2 85 272-358 12-97 (102)
233 1why_A Hypothetical protein ri 99.7 6.7E-16 2.3E-20 120.1 10.8 75 176-254 15-92 (97)
234 2dnn_A RNA-binding protein 12; 99.7 4E-16 1.4E-20 124.2 9.7 75 178-253 16-91 (109)
235 2j76_E EIF-4B, EIF4B, eukaryot 99.7 1.1E-16 3.6E-21 125.5 6.1 79 175-254 16-97 (100)
236 2ek1_A RNA-binding protein 12; 99.7 2.4E-16 8.3E-21 122.0 8.1 78 274-352 14-94 (95)
237 2la4_A Nuclear and cytoplasmic 99.7 3.3E-16 1.1E-20 122.8 8.9 75 175-253 24-99 (101)
238 1p1t_A Cleavage stimulation fa 99.6 2.4E-16 8.2E-21 124.1 8.1 81 274-355 7-90 (104)
239 2m2b_A RNA-binding protein 10; 99.6 1.5E-16 5.1E-21 131.0 7.2 81 272-354 20-109 (131)
240 2cqp_A RNA-binding protein 12; 99.6 2.4E-16 8.2E-21 122.8 8.1 79 176-254 13-94 (98)
241 1iqt_A AUF1, heterogeneous nuc 99.6 7E-17 2.4E-21 119.4 4.7 73 180-252 1-75 (75)
242 2cq4_A RNA binding motif prote 99.6 2.9E-16 9.8E-21 125.9 8.7 77 177-253 24-102 (114)
243 2dgw_A Probable RNA-binding pr 99.6 1.1E-15 3.8E-20 117.4 11.6 80 273-354 8-88 (91)
244 1fjc_A Nucleolin RBD2, protein 99.6 5.2E-16 1.8E-20 120.4 9.8 81 272-356 13-94 (96)
245 2cpj_A Non-POU domain-containi 99.6 4.6E-16 1.6E-20 121.5 9.6 76 175-254 12-88 (99)
246 3ex7_B RNA-binding protein 8A; 99.6 4.2E-16 1.4E-20 127.2 9.6 80 176-255 20-102 (126)
247 2a3j_A U1 small nuclear ribonu 99.6 2.2E-16 7.5E-21 129.2 7.9 83 273-357 27-114 (127)
248 2krb_A Eukaryotic translation 99.6 1.7E-16 5.9E-21 119.3 6.7 72 276-348 2-81 (81)
249 2xnq_A Nuclear polyadenylated 99.6 1.2E-15 4.2E-20 118.9 11.5 76 272-354 19-96 (97)
250 2ek1_A RNA-binding protein 12; 99.6 1.6E-16 5.6E-21 122.9 6.5 77 177-253 14-93 (95)
251 1x4e_A RNA binding motif, sing 99.6 9.3E-17 3.2E-21 121.8 5.0 78 273-351 3-83 (85)
252 1wex_A Hypothetical protein (r 99.6 5.8E-16 2E-20 122.3 9.6 80 272-356 12-94 (104)
253 2j76_E EIF-4B, EIF4B, eukaryot 99.6 1.9E-16 6.4E-21 124.1 6.7 80 272-353 16-98 (100)
254 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.6 7.9E-16 2.7E-20 127.6 10.6 78 175-252 60-140 (140)
255 2cq4_A RNA binding motif prote 99.6 2E-16 6.8E-21 126.9 6.6 81 273-354 23-105 (114)
256 1x5o_A RNA binding motif, sing 99.6 9E-16 3.1E-20 122.9 10.4 81 272-353 22-112 (114)
257 2a3j_A U1 small nuclear ribonu 99.6 6.2E-16 2.1E-20 126.6 9.5 77 177-254 28-109 (127)
258 2e5g_A U6 snRNA-specific termi 99.6 1.7E-15 5.8E-20 117.1 11.5 75 177-254 7-81 (94)
259 2cqh_A IGF-II mRNA-binding pro 99.6 4.7E-16 1.6E-20 120.0 8.2 80 273-358 6-88 (93)
260 1h2v_Z 20 kDa nuclear CAP bind 99.6 1.6E-15 5.5E-20 128.4 12.2 81 174-254 35-118 (156)
261 2cpd_A Apobec-1 stimulating pr 99.6 3.2E-15 1.1E-19 116.7 13.0 80 272-358 12-94 (99)
262 2la4_A Nuclear and cytoplasmic 99.6 6E-16 2E-20 121.3 8.9 77 272-353 24-101 (101)
263 2dgt_A RNA-binding protein 30; 99.6 2E-15 6.8E-20 116.2 11.7 75 175-255 7-82 (92)
264 2fc9_A NCL protein; structure 99.6 1.3E-15 4.3E-20 119.4 10.5 78 175-255 12-91 (101)
265 2e5j_A Methenyltetrahydrofolat 99.6 1.3E-15 4.3E-20 118.6 10.4 77 175-254 16-93 (97)
266 2m2b_A RNA-binding protein 10; 99.6 1.9E-16 6.5E-21 130.4 6.0 79 176-255 21-108 (131)
267 2dnp_A RNA-binding protein 14; 99.6 1.3E-15 4.5E-20 116.8 10.3 75 175-255 6-81 (90)
268 1whx_A Hypothetical protein ri 99.6 6.2E-16 2.1E-20 123.6 8.7 75 177-255 9-84 (111)
269 2kvi_A Nuclear polyadenylated 99.6 5.4E-16 1.8E-20 120.5 8.1 81 272-359 7-89 (96)
270 2jvo_A Nucleolar protein 3; nu 99.6 1E-15 3.5E-20 121.8 9.8 76 173-254 26-102 (108)
271 2lmi_A GRSF-1, G-rich sequence 99.6 2.4E-16 8.2E-21 125.1 6.1 79 175-253 8-90 (107)
272 2cpy_A RNA-binding protein 12; 99.6 5.6E-16 1.9E-20 124.4 8.1 82 272-354 12-95 (114)
273 2xnq_A Nuclear polyadenylated 99.6 1.6E-15 5.6E-20 118.1 10.5 75 174-254 18-94 (97)
274 2cpx_A Hypothetical protein FL 99.6 1.9E-15 6.5E-20 121.2 11.2 83 272-357 22-109 (115)
275 2fc8_A NCL protein; structure 99.6 2.1E-15 7.1E-20 118.3 11.0 83 272-358 12-97 (102)
276 2db1_A Heterogeneous nuclear r 99.6 9.7E-16 3.3E-20 123.8 9.3 79 273-352 15-97 (118)
277 1x4f_A Matrin 3; structural ge 99.6 5.2E-16 1.8E-20 123.8 7.4 76 175-254 22-101 (112)
278 1uaw_A Mouse-musashi-1; RNP-ty 99.6 3.5E-16 1.2E-20 116.1 6.0 73 276-350 1-76 (77)
279 2e5j_A Methenyltetrahydrofolat 99.6 1.1E-15 3.6E-20 119.0 9.0 79 272-354 16-95 (97)
280 2ytc_A PRE-mRNA-splicing facto 99.6 2.3E-15 7.9E-20 113.9 10.7 74 273-351 10-85 (85)
281 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.6 2.7E-15 9.3E-20 124.3 12.1 78 272-350 60-140 (140)
282 2hgn_A Heterogeneous nuclear r 99.6 1.7E-16 5.7E-21 131.9 4.4 79 175-254 43-122 (139)
283 2hgn_A Heterogeneous nuclear r 99.6 1.7E-16 5.6E-21 132.0 4.2 124 219-357 2-127 (139)
284 2dgu_A Heterogeneous nuclear r 99.6 2.8E-15 9.5E-20 118.0 11.1 73 177-255 10-83 (103)
285 2cpj_A Non-POU domain-containi 99.6 1.6E-15 5.4E-20 118.4 9.6 78 272-354 12-90 (99)
286 1wg5_A Heterogeneous nuclear r 99.6 1.9E-15 6.4E-20 119.3 10.0 81 273-354 13-95 (104)
287 2cpd_A Apobec-1 stimulating pr 99.6 5E-15 1.7E-19 115.6 12.3 74 176-255 13-89 (99)
288 1nu4_A U1A RNA binding domain; 99.6 7.8E-16 2.7E-20 119.5 7.5 80 273-354 6-90 (97)
289 2hgm_A HNRPF protein, heteroge 99.6 7.4E-16 2.5E-20 125.8 7.6 78 175-253 39-119 (126)
290 3d2w_A TAR DNA-binding protein 99.6 1.7E-15 5.7E-20 116.2 9.2 76 175-254 8-83 (89)
291 1nu4_A U1A RNA binding domain; 99.6 4.8E-16 1.6E-20 120.7 6.1 78 176-254 6-88 (97)
292 1fj7_A Nucleolin RBD1, protein 99.6 4.7E-16 1.6E-20 121.8 5.8 81 273-355 15-97 (101)
293 1whx_A Hypothetical protein ri 99.6 2.1E-15 7.3E-20 120.5 9.8 79 274-357 9-88 (111)
294 1iqt_A AUF1, heterogeneous nuc 99.6 4.4E-16 1.5E-20 115.0 5.3 73 277-350 1-75 (75)
295 2kvi_A Nuclear polyadenylated 99.6 1.2E-15 4.3E-20 118.4 8.1 73 176-254 8-82 (96)
296 1wel_A RNA-binding protein 12; 99.6 4.5E-16 1.5E-20 126.8 5.8 79 175-253 22-102 (124)
297 2cpx_A Hypothetical protein FL 99.6 2.5E-15 8.7E-20 120.4 10.1 78 176-255 23-105 (115)
298 3egn_A RNA-binding protein 40; 99.6 1.1E-15 3.9E-20 127.5 8.3 85 273-359 43-136 (143)
299 3q2s_C Cleavage and polyadenyl 99.6 1.3E-15 4.5E-20 137.3 9.3 77 177-253 67-148 (229)
300 2dnn_A RNA-binding protein 12; 99.6 2.5E-15 8.6E-20 119.6 9.8 76 275-352 16-92 (109)
301 3lqv_A PRE-mRNA branch site pr 99.6 1.8E-15 6.1E-20 121.4 9.0 79 274-354 7-86 (115)
302 1fj7_A Nucleolin RBD1, protein 99.6 4.8E-16 1.6E-20 121.8 5.2 78 176-254 15-94 (101)
303 1fjc_A Nucleolin RBD2, protein 99.6 1.3E-15 4.3E-20 118.2 7.5 76 176-254 14-90 (96)
304 2dha_A FLJ20171 protein; RRM d 99.6 8.9E-16 3.1E-20 124.9 6.9 77 177-253 22-103 (123)
305 2hgl_A HNRPF protein, heteroge 99.6 1.3E-15 4.5E-20 126.1 7.9 78 274-352 43-124 (136)
306 1wf1_A RNA-binding protein RAL 99.6 2.8E-15 9.7E-20 119.3 9.6 72 177-254 26-99 (110)
307 1rk8_A CG8781-PA, CG8781-PA pr 99.6 3.1E-15 1.1E-19 128.0 10.4 78 177-254 71-151 (165)
308 2xs2_A Deleted in azoospermia- 99.6 8.2E-16 2.8E-20 120.7 6.2 76 177-253 8-84 (102)
309 1wg1_A KIAA1579 protein, homol 99.6 1.8E-15 6.2E-20 115.6 8.0 73 177-254 4-77 (88)
310 1x4f_A Matrin 3; structural ge 99.6 2.4E-15 8.2E-20 120.0 8.8 79 272-355 22-104 (112)
311 2cqh_A IGF-II mRNA-binding pro 99.6 1.7E-15 5.9E-20 116.8 7.7 74 176-254 6-82 (93)
312 2xs2_A Deleted in azoospermia- 99.6 2E-15 6.9E-20 118.4 8.2 80 274-355 8-88 (102)
313 2e5g_A U6 snRNA-specific termi 99.6 1.1E-14 3.6E-19 112.6 11.6 79 274-356 7-85 (94)
314 1x5p_A Negative elongation fac 99.6 1.5E-14 5.1E-19 112.5 12.5 74 175-254 12-86 (97)
315 2lmi_A GRSF-1, G-rich sequence 99.6 9.1E-16 3.1E-20 121.7 5.5 79 273-352 9-91 (107)
316 2e44_A Insulin-like growth fac 99.6 3.3E-15 1.1E-19 115.8 8.2 77 176-254 13-91 (96)
317 2fc8_A NCL protein; structure 99.6 7.6E-15 2.6E-19 115.0 10.3 77 175-254 12-91 (102)
318 2cq2_A Hypothetical protein LO 99.6 2.7E-15 9.2E-20 119.9 7.3 73 177-253 24-104 (114)
319 3q2s_C Cleavage and polyadenyl 99.6 4.2E-15 1.4E-19 134.0 9.3 78 274-352 67-149 (229)
320 1wel_A RNA-binding protein 12; 99.6 2.5E-15 8.5E-20 122.4 7.0 79 273-352 23-103 (124)
321 2hzc_A Splicing factor U2AF 65 99.6 6.2E-15 2.1E-19 112.0 8.7 71 177-251 5-86 (87)
322 2lcw_A RNA-binding protein FUS 99.3 1.7E-16 6E-21 127.6 0.0 83 273-356 5-98 (116)
323 2e44_A Insulin-like growth fac 99.6 1.1E-14 3.8E-19 112.8 10.1 77 274-353 14-92 (96)
324 1sjr_A Polypyrimidine tract-bi 99.6 9.5E-15 3.2E-19 123.9 10.4 78 274-354 45-125 (164)
325 3zzy_A Polypyrimidine tract-bi 99.6 1.5E-14 5.2E-19 118.2 11.1 76 274-353 27-106 (130)
326 1sjr_A Polypyrimidine tract-bi 99.6 9.9E-15 3.4E-19 123.7 10.3 77 177-255 45-124 (164)
327 1wf0_A TDP-43, TAR DNA-binding 99.6 5.5E-15 1.9E-19 112.7 8.0 74 177-254 4-77 (88)
328 2f3j_A RNA and export factor b 99.6 6.1E-15 2.1E-19 127.7 9.2 79 176-254 86-166 (177)
329 3egn_A RNA-binding protein 40; 99.6 3.8E-15 1.3E-19 124.3 7.5 78 176-254 43-129 (143)
330 2lcw_A RNA-binding protein FUS 99.3 2.7E-16 9.1E-21 126.6 0.0 79 176-254 5-94 (116)
331 1x5p_A Negative elongation fac 99.6 4.9E-14 1.7E-18 109.5 12.9 76 273-355 13-89 (97)
332 2dnl_A Cytoplasmic polyadenyla 99.6 1.7E-14 5.7E-19 115.7 10.6 74 176-252 6-85 (114)
333 3beg_B Splicing factor, argini 99.6 8.1E-15 2.8E-19 117.8 8.5 73 177-254 15-93 (115)
334 1wg1_A KIAA1579 protein, homol 99.6 8.1E-15 2.8E-19 111.9 8.1 75 274-354 4-79 (88)
335 2dha_A FLJ20171 protein; RRM d 99.6 4.6E-15 1.6E-19 120.7 7.1 78 273-351 21-103 (123)
336 3d2w_A TAR DNA-binding protein 99.6 1.3E-14 4.6E-19 111.1 9.3 76 272-354 8-85 (89)
337 2f3j_A RNA and export factor b 99.6 8.2E-15 2.8E-19 126.9 9.0 83 273-356 86-170 (177)
338 2voo_A Lupus LA protein; RNA-b 99.5 4.3E-14 1.5E-18 124.1 13.1 119 227-353 63-187 (193)
339 3beg_B Splicing factor, argini 99.5 1E-14 3.4E-19 117.3 8.3 76 274-355 15-96 (115)
340 1wf0_A TDP-43, TAR DNA-binding 99.5 9E-15 3.1E-19 111.5 7.6 79 274-357 4-82 (88)
341 3zzy_A Polypyrimidine tract-bi 99.5 2.2E-14 7.5E-19 117.2 10.2 75 178-255 28-106 (130)
342 2cq2_A Hypothetical protein LO 99.5 2.1E-14 7.2E-19 114.7 9.9 77 273-354 23-107 (114)
343 2hgm_A HNRPF protein, heteroge 99.5 8.3E-15 2.8E-19 119.5 7.4 78 273-352 40-120 (126)
344 2pe8_A Splicing factor 45; RRM 99.5 5.1E-14 1.8E-18 111.2 11.4 80 272-352 5-93 (105)
345 2voo_A Lupus LA protein; RNA-b 99.5 2.6E-14 9E-19 125.4 10.6 77 178-254 109-186 (193)
346 2diu_A KIAA0430 protein; struc 99.5 2E-14 6.8E-19 109.7 7.8 71 276-355 10-86 (96)
347 2e5i_A Heterogeneous nuclear r 99.5 4.3E-14 1.5E-18 114.8 10.2 75 275-354 25-103 (124)
348 2j8a_A Histone-lysine N-methyl 99.5 2.3E-14 7.8E-19 115.6 8.4 76 178-253 2-94 (136)
349 2e5i_A Heterogeneous nuclear r 99.5 6.6E-14 2.3E-18 113.7 10.5 73 179-255 26-102 (124)
350 2bz2_A Negative elongation fac 99.5 4E-14 1.4E-18 114.8 9.1 74 175-254 36-110 (121)
351 2bz2_A Negative elongation fac 99.5 3.7E-14 1.3E-18 115.1 8.6 78 272-356 36-114 (121)
352 2pe8_A Splicing factor 45; RRM 99.5 9.5E-14 3.3E-18 109.7 10.6 77 177-253 7-92 (105)
353 2hzc_A Splicing factor U2AF 65 99.5 9.4E-14 3.2E-18 105.4 9.5 72 274-349 5-86 (87)
354 2diu_A KIAA0430 protein; struc 99.5 9.9E-14 3.4E-18 105.8 8.3 69 178-254 8-83 (96)
355 3u1l_A PRE-mRNA-splicing facto 99.5 8.6E-14 2.9E-18 125.5 8.8 76 175-254 131-228 (240)
356 2dit_A HIV TAT specific factor 99.5 5.4E-13 1.8E-17 106.5 11.9 81 272-355 12-104 (112)
357 2dnl_A Cytoplasmic polyadenyla 99.5 8.7E-14 3E-18 111.5 6.8 73 274-350 7-85 (114)
358 2j8a_A Histone-lysine N-methyl 99.4 1.9E-13 6.6E-18 110.2 8.5 77 276-353 3-96 (136)
359 3u1l_A PRE-mRNA-splicing facto 99.4 1.2E-13 4.1E-18 124.6 8.1 82 273-359 132-235 (240)
360 2dit_A HIV TAT specific factor 99.4 7.3E-13 2.5E-17 105.7 11.0 78 175-254 12-101 (112)
361 3v4m_A Splicing factor U2AF 65 99.4 5.9E-13 2E-17 105.1 8.7 79 273-352 3-96 (105)
362 3ue2_A Poly(U)-binding-splicin 99.4 1.4E-12 4.7E-17 105.1 8.9 79 273-352 18-108 (118)
363 1jmt_A Splicing factor U2AF 35 99.4 2.5E-13 8.5E-18 107.1 4.4 70 183-252 20-103 (104)
364 1jmt_A Splicing factor U2AF 35 99.4 3.2E-13 1.1E-17 106.5 4.9 70 280-350 20-103 (104)
365 3v4m_A Splicing factor U2AF 65 99.3 1.9E-12 6.5E-17 102.2 7.9 77 177-253 4-95 (105)
366 2d9o_A DNAJ (HSP40) homolog, s 99.3 1E-11 3.5E-16 97.0 10.5 67 285-357 27-94 (100)
367 2d9o_A DNAJ (HSP40) homolog, s 99.3 1.3E-11 4.6E-16 96.3 9.6 62 188-254 27-89 (100)
368 3ue2_A Poly(U)-binding-splicin 99.3 7.9E-12 2.7E-16 100.7 8.2 77 177-253 19-107 (118)
369 3s6e_A RNA-binding protein 39; 99.2 2.6E-11 8.9E-16 97.0 9.4 75 274-351 6-91 (114)
370 3tht_A Alkylated DNA repair pr 99.2 2.1E-11 7.1E-16 115.6 8.9 74 176-253 16-97 (345)
371 3tht_A Alkylated DNA repair pr 99.2 2.8E-11 9.7E-16 114.7 9.2 76 272-352 15-98 (345)
372 3s6e_A RNA-binding protein 39; 99.2 7.3E-11 2.5E-15 94.3 9.2 76 176-253 5-91 (114)
373 2dnr_A Synaptojanin-1; RRM dom 99.0 1E-09 3.5E-14 82.9 8.5 73 274-353 6-86 (91)
374 2dnr_A Synaptojanin-1; RRM dom 99.0 2.3E-09 7.9E-14 81.0 8.7 71 178-254 7-85 (91)
375 1owx_A Lupus LA protein, SS-B, 99.0 3.3E-09 1.1E-13 85.1 9.7 72 177-252 17-93 (121)
376 1owx_A Lupus LA protein, SS-B, 98.9 5.1E-09 1.7E-13 84.0 8.6 73 272-349 15-92 (121)
377 1ufw_A Synaptojanin 2; RNP dom 98.8 1.5E-08 5.2E-13 76.9 7.1 69 178-252 15-92 (95)
378 1ufw_A Synaptojanin 2; RNP dom 98.8 1.7E-08 5.8E-13 76.6 6.9 72 273-351 13-93 (95)
379 3dxb_A Thioredoxin N-terminall 98.7 3.3E-08 1.1E-12 88.0 7.4 64 287-351 141-211 (222)
380 3dxb_A Thioredoxin N-terminall 98.6 4E-08 1.4E-12 87.5 7.2 65 189-253 140-211 (222)
381 2l9w_A U4/U6 snRNA-associated- 98.4 9.2E-07 3.2E-11 68.4 8.9 71 275-350 21-97 (117)
382 2dhx_A Poly (ADP-ribose) polym 98.2 1E-05 3.6E-10 62.0 10.5 88 177-288 7-99 (104)
383 2l9w_A U4/U6 snRNA-associated- 98.1 1.1E-05 3.8E-10 62.4 7.9 74 174-251 17-96 (117)
384 1wey_A Calcipressin 1; structu 97.7 0.00024 8.2E-09 54.7 9.6 75 274-353 4-84 (104)
385 2dhx_A Poly (ADP-ribose) polym 97.6 0.00081 2.8E-08 51.5 10.9 74 274-353 7-84 (104)
386 1wey_A Calcipressin 1; structu 97.4 0.0016 5.4E-08 50.1 9.8 73 177-253 4-82 (104)
387 1wwh_A Nucleoporin 35, nucleop 97.2 0.0018 6.3E-08 51.1 8.8 71 177-252 23-94 (119)
388 1wwh_A Nucleoporin 35, nucleop 97.0 0.0056 1.9E-07 48.3 9.6 71 274-350 23-94 (119)
389 1whv_A Poly(A)-specific ribonu 97.0 0.0036 1.2E-07 47.4 8.0 57 175-238 13-70 (100)
390 1uw4_A UPF3X; nonsense mediate 96.9 0.0036 1.2E-07 47.2 7.9 65 179-243 2-71 (91)
391 1uw4_A UPF3X; nonsense mediate 96.5 0.011 3.7E-07 44.5 8.0 74 276-350 2-85 (91)
392 3p3d_A Nucleoporin 53; structu 96.2 0.0058 2E-07 48.9 5.0 74 179-253 8-97 (132)
393 1whv_A Poly(A)-specific ribonu 96.2 0.014 4.8E-07 44.1 6.7 52 276-335 17-69 (100)
394 3ctr_A Poly(A)-specific ribonu 96.1 0.0079 2.7E-07 45.7 4.9 52 180-238 8-60 (101)
395 3p3d_A Nucleoporin 53; structu 95.8 0.013 4.6E-07 46.8 5.6 74 276-351 8-97 (132)
396 3ctr_A Poly(A)-specific ribonu 95.8 0.013 4.3E-07 44.5 5.1 52 277-336 8-60 (101)
397 3pq1_A Poly(A) RNA polymerase; 95.7 0.0065 2.2E-07 59.4 3.8 64 175-242 50-113 (464)
398 3pq1_A Poly(A) RNA polymerase; 94.8 0.018 6.1E-07 56.3 4.0 59 272-335 50-108 (464)
399 2l08_A Regulator of nonsense t 94.7 0.028 9.7E-07 42.6 4.0 66 178-243 9-79 (97)
400 2l08_A Regulator of nonsense t 93.2 0.07 2.4E-06 40.4 3.6 74 276-350 10-93 (97)
401 3d45_A Poly(A)-specific ribonu 86.4 1.8 6.3E-05 42.7 8.2 57 176-239 438-495 (507)
402 3d45_A Poly(A)-specific ribonu 77.2 6.8 0.00023 38.6 8.3 54 275-336 440-494 (507)
403 4e8u_A Putative uncharacterize 44.0 38 0.0013 28.1 5.5 60 179-239 13-84 (172)
404 4e8u_A Putative uncharacterize 33.1 79 0.0027 26.1 5.7 48 276-325 13-71 (172)
405 2g0c_A ATP-dependent RNA helic 31.1 38 0.0013 23.4 3.1 59 286-351 12-75 (76)
406 4eyt_A Telomerase associated p 23.9 2.1E+02 0.0073 20.8 8.4 54 177-236 11-64 (129)
407 4eyt_A Telomerase associated p 22.8 2.2E+02 0.0077 20.7 7.3 66 275-347 12-85 (129)
408 3j21_T 50S ribosomal protein L 22.6 2.1E+02 0.007 20.7 5.7 50 283-333 30-80 (86)
No 1
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=100.00 E-value=3.6e-42 Score=322.46 Aligned_cols=241 Identities=17% Similarity=0.208 Sum_probs=203.0
Q ss_pred hhcccCCccccccHHHHHHHHhccCCcceEEecCCCCCCcccccCCCCCCCCCeEEeeecccCCCCCccccccchhhhhh
Q 017897 75 MERKMGESFKDCEMRDLVDMLSKLNPMAAEFVPPSLANGQIFNFNPAFFGPNGFGYTNNFIMHTDGTANTNGHTTTRRKR 154 (364)
Q Consensus 75 ~~~~~g~~~~~~~~~~L~~~Fs~~G~i~~v~v~~d~~t~~s~~~~~~~~~~~GfaFV~f~~~~~~~~~~~~a~~~~a~~~ 154 (364)
...++|+|++++++++|+++|++||+|.+|+|++|+.+ + + |||||.|.+ .+ +|.. |++
T Consensus 42 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~-~---------g~afV~f~~-~~------~A~~--A~~- 99 (292)
T 2ghp_A 42 TTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKK--N-F---------RFARIEFAR-YD------GALA--AIT- 99 (292)
T ss_dssp CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTS--S-S---------EEEEEEESS-HH------HHHH--HHT-
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCC--C-c---------EEEEEEECC-HH------HHHH--HHH-
Confidence 46788999999999999999999999999999998865 2 4 999999999 66 6888 885
Q ss_pred cCCC--CCccccccCCcccccCCCCCcEEEEeCCCCCCcHHHHHHHhhcCC-CeeEEEEecCC-CCCceEEEEEeCCHHH
Q 017897 155 NGYS--QGKRRMNCRTSNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCG-QVVDCRICGDP-NSVLRFAFVEFTDEEG 230 (364)
Q Consensus 155 ~~~~--~g~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G-~i~~~~i~~d~-~~~rG~aFV~F~~~~~ 230 (364)
+++. .|++ +++.+. ..++|||+|||+++++++|+++|+.|| .|.+++++.++ +.++|||||+|.+.++
T Consensus 100 ~~~~~~~g~~---i~v~~~-----~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~ 171 (292)
T 2ghp_A 100 KTHKVVGQNE---IIVSHL-----TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKED 171 (292)
T ss_dssp TTTCEETTEE---CEEEEC-----CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHH
T ss_pred hCCcEeCCcE---EEEEEC-----CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHH
Confidence 5554 6666 444332 478999999999999999999999999 99999999887 4579999999999999
Q ss_pred HHHHHH-ccccccCCeeEEEeeCCCCCCCCCCCCCCCCccccccCceEEEEeCCCCC-CCHHHHHHHhhhcCCceeEEEE
Q 017897 231 ARAALS-LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKK-VTQGDIKLFFESVCGEVQRLRL 308 (364)
Q Consensus 231 A~~al~-l~g~~l~g~~i~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~-~tee~L~~~F~~~~G~I~~v~i 308 (364)
|.+|++ |+|..+.|++|.|.++.+...... ........++|||+|||.. +++++|+++|++| |.|.+|.+
T Consensus 172 a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~-------~~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~-G~v~~v~i 243 (292)
T 2ghp_A 172 ARYCVEKLNGLKIEGYTLVTKVSNPLEKSKR-------TDSATLEGREIMIRNLSTELLDENLLRESFEGF-GSIEKINI 243 (292)
T ss_dssp HHHHHHHHTTCEETTEECEEEECCCC----------------CCTTTEEEEEEECTTTCCHHHHHHHHGGG-SCEEEEEC
T ss_pred HHHHHHHhCCCEeCCcEEEEEECCCCccccc-------ccccCCCCceEEEECCCcccCCHHHHHHHHhcc-CCeeEEEE
Confidence 999998 999999999999999864321110 0122345689999999999 9999999999997 99999999
Q ss_pred eccC---CCCeeEEEEEecCHHHHHHHHhcCCCeeCCeeeEEeecCCC
Q 017897 309 LGDY---QHSTRIAFVEFAMAESAIAALNCSGAVLGSLPIRVSPSKTP 353 (364)
Q Consensus 309 ~~d~---~~~kg~afV~F~~~e~A~~Al~lng~~~~g~~l~V~~ak~~ 353 (364)
+++. +.++|||||+|.+.++|.+|+.|||..|+|++|+|.|++++
T Consensus 244 ~~~~~~tg~~~g~afV~F~~~~~A~~A~~l~g~~~~g~~i~V~~a~~k 291 (292)
T 2ghp_A 244 PAGQKEHSFNNCCAFMVFENKDSAERALQMNRSLLGNREISVSLADKK 291 (292)
T ss_dssp CSCCC---CCCEEEEEEESSHHHHHHHGGGTTEEETTEEEEEEECCCC
T ss_pred EecCCcCCCCceEEEEEeCCHHHHHHHHHhcCCEECCcEEEEEEecCC
Confidence 9874 67899999999999999999999999999999999999875
No 2
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=100.00 E-value=7.4e-42 Score=319.11 Aligned_cols=236 Identities=17% Similarity=0.173 Sum_probs=205.8
Q ss_pred hhcccCCccccccHHHHHHHHhccCCcceEEecCCCCCCcccccCCCCCCCCCeEEeeecccCCCCCccccccchhhhhh
Q 017897 75 MERKMGESFKDCEMRDLVDMLSKLNPMAAEFVPPSLANGQIFNFNPAFFGPNGFGYTNNFIMHTDGTANTNGHTTTRRKR 154 (364)
Q Consensus 75 ~~~~~g~~~~~~~~~~L~~~Fs~~G~i~~v~v~~d~~t~~s~~~~~~~~~~~GfaFV~f~~~~~~~~~~~~a~~~~a~~~ 154 (364)
...++|+|++++++++|+++|++|| |.+|++ +++ + |||||.|.+ .+ +|.. |++.
T Consensus 23 ~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~------~~~-~---------g~afV~f~~-~~------~A~~--A~~~ 76 (284)
T 3smz_A 23 RKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV------DKY-K---------GTAFVTLLN-GE------QAEA--AINA 76 (284)
T ss_dssp CEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE------ETT-T---------TEEEEEESS-HH------HHHH--HHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE------ecC-C---------CEEEEEeCC-HH------HHHH--HHHH
Confidence 3567899999999999999999999 999998 334 5 999999999 66 6888 9988
Q ss_pred cCCC--CCccccccCCcccccCCCCCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEeCCHHH
Q 017897 155 NGYS--QGKRRMNCRTSNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEG 230 (364)
Q Consensus 155 ~~~~--~g~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~~--~~rG~aFV~F~~~~~ 230 (364)
+++. .|++ +++.+. ...++|||+|||+++++++|+++|+.||.|.+++++.++. .++|||||+|.+.++
T Consensus 77 l~~~~~~g~~---i~v~~~----~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~ 149 (284)
T 3smz_A 77 FHQSRLRERE---LSVQLQ----PTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDS 149 (284)
T ss_dssp HTTCEETTEE---CEEEEC----CCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHH
T ss_pred cCCCeeCCeE---EEEEec----CCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHH
Confidence 8776 6766 444432 2458999999999999999999999999999999998863 469999999999999
Q ss_pred HHHHHH-ccccccCCeeEEEeeCCCCCCCCCCCCCCCCccccccCceEEEEeCCCCCC-CHHHHHHHhhhcCCceeEEEE
Q 017897 231 ARAALS-LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKV-TQGDIKLFFESVCGEVQRLRL 308 (364)
Q Consensus 231 A~~al~-l~g~~l~g~~i~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~-tee~L~~~F~~~~G~I~~v~i 308 (364)
|.+|++ ++|..+.|++|.|.++..... .......++|||+|||..+ ++++|+++|++| |.|.+|.|
T Consensus 150 a~~A~~~l~~~~~~g~~i~v~~a~~~~~-----------~~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~-G~i~~v~i 217 (284)
T 3smz_A 150 AARAKSDLLGKPLGPRTLYVHWTDAGQL-----------TPALLHSRCLCVDRLPPGFNDVDALCRALSAV-HSPTFCQL 217 (284)
T ss_dssp HHHHHHHHTTCEETTEECEEEECCGGGC-----------CTTTTSCSEEEEECCCTTCCCHHHHHHHTCSS-SCCSEEEE
T ss_pred HHHHHHHhCCCEeCCcEEEEEECCCCCC-----------CcccCCccEEEEecCCcccCCHHHHHHHhhCC-CCeEEEEE
Confidence 999997 999999999999999864321 1123456899999999995 999999999997 99999999
Q ss_pred eccC-CCCeeEEEEEecCHHHHHHHHh-cCCCeeCCeeeEEeecCCCCC
Q 017897 309 LGDY-QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSPSKTPVR 355 (364)
Q Consensus 309 ~~d~-~~~kg~afV~F~~~e~A~~Al~-lng~~~~g~~l~V~~ak~~~~ 355 (364)
+++. +.++|+|||+|.+.++|.+|+. |||..++|++|+|.|++++..
T Consensus 218 ~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 266 (284)
T 3smz_A 218 ACGQDGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSFCAPGPP 266 (284)
T ss_dssp EECSSCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCSSSC
T ss_pred EECCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEEecCCCc
Confidence 9875 7889999999999999999999 999999999999999987654
No 3
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=100.00 E-value=2.8e-34 Score=257.25 Aligned_cols=164 Identities=26% Similarity=0.387 Sum_probs=148.6
Q ss_pred CCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEeCCHHHHHHHHH-ccccccCCeeEEEeeCC
Q 017897 177 IRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSK 253 (364)
Q Consensus 177 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~~--~~rG~aFV~F~~~~~A~~al~-l~g~~l~g~~i~V~~a~ 253 (364)
..++|||+|||+++|+++|+++|++||.|.+|+|++|+. .++|||||+|.+.++|.+||+ +++..+.|+.|++.++.
T Consensus 14 p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~ 93 (213)
T 4f02_A 14 PMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQ 93 (213)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccccc
Confidence 457999999999999999999999999999999999874 469999999999999999998 99999999999999974
Q ss_pred CCCCCCCCCCCCCCccccccCceEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccCCCCeeEEEEEecCHHHHHHHH
Q 017897 254 TAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAAL 333 (364)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~e~A~~Al 333 (364)
.. .........+|||+|||..+++++|+++|++| |.|.+|+|+++.+.++|||||+|.+.++|.+||
T Consensus 94 ~~------------~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~-G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai 160 (213)
T 4f02_A 94 RD------------PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAF-GNILSCKVVCDENGSKGYGFVHFETQEAAERAI 160 (213)
T ss_dssp CC------------THHHHHCTTEEEEESCCTTCCHHHHHHHHGGG-SCEEEEEEEEETTEEEEEEEEEESSHHHHHHHH
T ss_pred cc------------ccccccccccceECCcccccHHHHHHHHHhhc-CCeEEEEeeccCCCCceEEEEEeCCHHHHHHHH
Confidence 21 11223345789999999999999999999997 999999999998788999999999999999999
Q ss_pred h-cCCCeeCCeeeEEeecCCC
Q 017897 334 N-CSGAVLGSLPIRVSPSKTP 353 (364)
Q Consensus 334 ~-lng~~~~g~~l~V~~ak~~ 353 (364)
. |||..|+|++|+|.|++++
T Consensus 161 ~~lng~~~~g~~i~V~~a~~~ 181 (213)
T 4f02_A 161 EKMNGMLLNDRKVFVGRFKSR 181 (213)
T ss_dssp HHHTTCEETTEECEEEECCCH
T ss_pred HHhCCCEECCEEEEEEEcCCC
Confidence 9 9999999999999999764
No 4
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.9e-33 Score=240.20 Aligned_cols=161 Identities=22% Similarity=0.348 Sum_probs=146.5
Q ss_pred cEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCC-CCCceEEEEEeCCHHHHHHHHH-ccccccCCeeEEEeeCCCCC
Q 017897 179 RTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP-NSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSKTAI 256 (364)
Q Consensus 179 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~-~~~rG~aFV~F~~~~~A~~al~-l~g~~l~g~~i~V~~a~~~~ 256 (364)
++|||+|||+++|+++|+++|++||.|.+++++.++ +.++|||||+|.+.++|.+|++ +++..+.|++|.|.++....
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~ 80 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQ 80 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCC
Confidence 689999999999999999999999999999999987 4579999999999999999996 99999999999999985321
Q ss_pred CCCCCCCCCCCccccccCceEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccC--CCCeeEEEEEecCHHHHHHHHh
Q 017897 257 APVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN 334 (364)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~--~~~kg~afV~F~~~e~A~~Al~ 334 (364)
. ......++|||+|||..+++++|+++|++| |.|.++.++++. +.++|||||+|.+.++|.+|+.
T Consensus 81 ~------------~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~-G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~ 147 (166)
T 3md3_A 81 Q------------SSSDDTFNLFVGDLNVNVDDETLRNAFKDF-PSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMD 147 (166)
T ss_dssp C------------CCCTTCEEEEEESCCTTCCHHHHHHHHTTS-TTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHH
T ss_pred C------------CCCCCCceEEECCCCCCCCHHHHHHHHhcc-CCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH
Confidence 1 123456899999999999999999999997 999999999874 6889999999999999999999
Q ss_pred -cCCCeeCCeeeEEeecCC
Q 017897 335 -CSGAVLGSLPIRVSPSKT 352 (364)
Q Consensus 335 -lng~~~~g~~l~V~~ak~ 352 (364)
|||..++|++|+|.|+++
T Consensus 148 ~l~g~~~~g~~i~v~~a~~ 166 (166)
T 3md3_A 148 SMQGQDLNGRPLRINWAAK 166 (166)
T ss_dssp HHTTCEETTEECEEEESCC
T ss_pred HhCCCccCCcEEEEEecCC
Confidence 999999999999999874
No 5
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=100.00 E-value=3.4e-33 Score=245.66 Aligned_cols=176 Identities=17% Similarity=0.270 Sum_probs=147.3
Q ss_pred CCCCCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEeCCHHHHHHHHHccccccCCeeEEEee
Q 017897 174 DEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLP 251 (364)
Q Consensus 174 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~~--~~rG~aFV~F~~~~~A~~al~l~g~~l~g~~i~V~~ 251 (364)
.+...++|||+|||+++|+++|+++|+.||.|.+|+++.++. .++|||||+|.+.++|.+||++++..+.|+.|.|.+
T Consensus 9 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~l~v~~ 88 (196)
T 1l3k_A 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKR 88 (196)
T ss_dssp CCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETTEECEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhcCCCEECCEEeeeec
Confidence 344578999999999999999999999999999999999874 469999999999999999999899999999999999
Q ss_pred CCCCCCCCCCCCCCCCccccccCceEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccC--CCCeeEEEEEecCHHHH
Q 017897 252 SKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESA 329 (364)
Q Consensus 252 a~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~--~~~kg~afV~F~~~e~A 329 (364)
+....... ........++|||+|||..+++++|+++|++| |.|..|.++++. +.++|||||+|.+.++|
T Consensus 89 ~~~~~~~~--------~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~-G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A 159 (196)
T 1l3k_A 89 AVSREDSQ--------RPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQY-GKIEVIEIMTDRGSGKKRGFAFVTFDDHDSV 159 (196)
T ss_dssp CCC-------------------CCSEEEEECCTTTCCHHHHHHHHTTT-SCEEEEEEEECTTTCCEEEEEEEEESSHHHH
T ss_pred ccCccccc--------ccccCCCcceEEEeCCCCCCCHHHHHHHHhcC-CCeEEEEEeecCCCCCccceEEEEECCHHHH
Confidence 75422111 11123355899999999999999999999997 999999999884 68999999999999999
Q ss_pred HHHHhcCCCeeCCeeeEEeecCCCCCCCC
Q 017897 330 IAALNCSGAVLGSLPIRVSPSKTPVRPRA 358 (364)
Q Consensus 330 ~~Al~lng~~~~g~~l~V~~ak~~~~~~~ 358 (364)
.+|+..++..|+|+.|.|.|+.++...+.
T Consensus 160 ~~A~~~~~~~~~G~~i~v~~a~~k~~~~~ 188 (196)
T 1l3k_A 160 DKIVIQKYHTVNGHNCEVRKALSKQEMAS 188 (196)
T ss_dssp HHHHHCSCCEETTEECEEEECC-------
T ss_pred HHHHHhCCcEECCEEEEEEecCChhHhcc
Confidence 99999779999999999999988755544
No 6
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=100.00 E-value=4.5e-32 Score=231.84 Aligned_cols=158 Identities=23% Similarity=0.410 Sum_probs=143.7
Q ss_pred CcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCC--CCCceEEEEEeCCHHHHHHHHH-ccccccCCeeEEEeeCCC
Q 017897 178 RRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP--NSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSKT 254 (364)
Q Consensus 178 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~--~~~rG~aFV~F~~~~~A~~al~-l~g~~l~g~~i~V~~a~~ 254 (364)
.++|||+|||+++++++|+++|+.||.|.+++++.++ +.++|||||+|.++++|.+|++ +++..+.|++|.|.++.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 5899999999999999999999999999999999987 3468999999999999999998 999999999999999753
Q ss_pred CCCCCCCCCCCCCccccccCceEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccC--CCCeeEEEEEecCHHHHHHH
Q 017897 255 AIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAA 332 (364)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~--~~~kg~afV~F~~~e~A~~A 332 (364)
.. .....++|||+|||..+++++|+++|++| |.|..+.++++. +.++|||||+|.+.++|.+|
T Consensus 82 ~~--------------~~~~~~~l~v~nl~~~~t~~~l~~~f~~~-G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A 146 (167)
T 1fxl_A 82 SS--------------ASIRDANLYVSGLPKTMTQKELEQLFSQY-GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEA 146 (167)
T ss_dssp CC--------------GGGTTCEEEEESCCTTCCHHHHHHHHGGG-SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHH
T ss_pred Cc--------------ccCCCCcEEECCCCCcCCHHHHHHHHHhc-CCEeEEEEEecCCCCCccceEEEEeCCHHHHHHH
Confidence 11 12345799999999999999999999997 999999999875 67899999999999999999
Q ss_pred Hh-cCCCeeCCee--eEEeec
Q 017897 333 LN-CSGAVLGSLP--IRVSPS 350 (364)
Q Consensus 333 l~-lng~~~~g~~--l~V~~a 350 (364)
+. |||..+.|+. |+|.||
T Consensus 147 ~~~l~g~~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 147 IKGLNGQKPSGATEPITVKFA 167 (167)
T ss_dssp HHHHTTCCCTTCSSCCEEEEC
T ss_pred HHHhcCCccCCCccceEEEeC
Confidence 99 9999999964 999886
No 7
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=100.00 E-value=3.2e-32 Score=243.06 Aligned_cols=178 Identities=25% Similarity=0.339 Sum_probs=150.5
Q ss_pred CCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCC--CCCceEEEEEeCCHHHHHHHHH-ccccccCCeeEEEeeCC
Q 017897 177 IRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP--NSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSK 253 (364)
Q Consensus 177 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~--~~~rG~aFV~F~~~~~A~~al~-l~g~~l~g~~i~V~~a~ 253 (364)
..++|||+|||.++|+++|+++|+.||.|.+|+++.++ +.++|||||+|.+.++|.+|++ +++..+.|++|.|.++.
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~ 106 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPS 106 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCS
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCC
Confidence 45899999999999999999999999999999999986 3479999999999999999998 99999999999998864
Q ss_pred CCCCCCCCCCCCCCccccccCceEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccC--CCCeeEEEEEecCHHHHHH
Q 017897 254 TAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIA 331 (364)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~--~~~kg~afV~F~~~e~A~~ 331 (364)
....... ............++|||+|||..+++++|+++|++| |.|..|.++++. +.++|||||+|.+.++|.+
T Consensus 107 ~~~~~~~---~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~-G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~ 182 (216)
T 2qfj_A 107 NIGQAQP---IIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAF-GKIKSATLARDPTTGKHKGYGFIEYEKAQSSQD 182 (216)
T ss_dssp CCGGGHH---HHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTS-SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHH
T ss_pred Cccccch---hhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhcc-CCeeEEEEEecCCCCCcCceEEEEecCHHHHHH
Confidence 3110000 000001123456899999999999999999999997 999999999884 6889999999999999999
Q ss_pred HHh-cCCCeeCCeeeEEeecCCCCCCCC
Q 017897 332 ALN-CSGAVLGSLPIRVSPSKTPVRPRA 358 (364)
Q Consensus 332 Al~-lng~~~~g~~l~V~~ak~~~~~~~ 358 (364)
|+. |||..|+|+.|+|.|+++++.+..
T Consensus 183 A~~~l~g~~~~g~~i~V~~a~~~~~~~~ 210 (216)
T 2qfj_A 183 AVSSMNLFDLGGQYLRVGKAVTPPMPLL 210 (216)
T ss_dssp HHHHHTTCBCSSSBCEEEECSSCSSTTS
T ss_pred HHHHccCCEeCCcEEEEEEecCCCCCCC
Confidence 999 999999999999999999865553
No 8
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=100.00 E-value=4.3e-32 Score=232.59 Aligned_cols=159 Identities=23% Similarity=0.402 Sum_probs=144.9
Q ss_pred CCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEeCCHHHHHHHHH-ccccccCCeeEEEeeCC
Q 017897 177 IRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSK 253 (364)
Q Consensus 177 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~~--~~rG~aFV~F~~~~~A~~al~-l~g~~l~g~~i~V~~a~ 253 (364)
..++|||+|||+++++++|+++|+.||.|.+++++.++. .++|||||+|.++++|.+|++ +++..+.|++|.|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 368999999999999999999999999999999999864 368999999999999999998 99999999999999985
Q ss_pred CCCCCCCCCCCCCCccccccCceEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccC--CCCeeEEEEEecCHHHHHH
Q 017897 254 TAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIA 331 (364)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~--~~~kg~afV~F~~~e~A~~ 331 (364)
+.. .....++|||+|||..+++++|+++|++| |.|..+.++++. +.++|||||+|.+.++|.+
T Consensus 82 ~~~--------------~~~~~~~l~v~nl~~~~t~~~l~~~f~~~-G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~ 146 (168)
T 1b7f_A 82 PGG--------------ESIKDTNLYVTNLPRTITDDQLDTIFGKY-GSIVQKNILRDKLTGRPRGVAFVRYNKREEAQE 146 (168)
T ss_dssp CCS--------------STTTTCEEEEESCCTTCCHHHHHHHHTSS-SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHH
T ss_pred CCc--------------ccCCCCCEEEeCCCCCCCHHHHHHhhhcC-CcEEEEEEEEcCCCCCcceEEEEEECCHHHHHH
Confidence 321 12345899999999999999999999997 999999999875 6789999999999999999
Q ss_pred HHh-cCCCeeCC--eeeEEeec
Q 017897 332 ALN-CSGAVLGS--LPIRVSPS 350 (364)
Q Consensus 332 Al~-lng~~~~g--~~l~V~~a 350 (364)
|+. |||..+.| ++|+|.||
T Consensus 147 A~~~l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 147 AISALNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp HHHHHTTCCCTTCSSCCEEEEC
T ss_pred HHHHhcCCEecCCCeEEEEEeC
Confidence 999 99999987 99999986
No 9
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=100.00 E-value=1.2e-32 Score=236.09 Aligned_cols=161 Identities=17% Similarity=0.253 Sum_probs=145.3
Q ss_pred CCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCC--CCCceEEEEEeCCHHHHHHHHHccccccCCeeEEEeeCCC
Q 017897 177 IRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP--NSVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSKT 254 (364)
Q Consensus 177 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~--~~~rG~aFV~F~~~~~A~~al~l~g~~l~g~~i~V~~a~~ 254 (364)
..++|||+|||+++|+++|+++|+.||.|.+++++.++ +.++|||||+|.+.++|.+|++. ++.+.|+.|.|.++..
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~g~~i~v~~~~~ 80 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT-QHILDGKVIDPKRAIP 80 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS-CCEETTEECCCEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc-ccccCCeEcccccccc
Confidence 36899999999999999999999999999999999986 45799999999999999999983 5689999999998642
Q ss_pred CCCCCCCCCCCCCccccccCceEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccC--CCCeeEEEEEecCHHHHHHH
Q 017897 255 AIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAA 332 (364)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~--~~~kg~afV~F~~~e~A~~A 332 (364)
.......++|||+|||..+++++|+++|++| |.|.++.++++. +.++|||||+|.+.++|.+|
T Consensus 81 --------------~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~-G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A 145 (167)
T 2cjk_A 81 --------------RDEQDKTGKIFVGGIGPDVRPKEFEEFFSQW-GTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRV 145 (167)
T ss_dssp --------------HHHHHHCEEEEEEEECTTCCHHHHHHHHHTT-SCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHH
T ss_pred --------------hhhccCCCeEEECCCCCCCCHHHHHHHHHhC-ccEEEEEEEEcCCCCccceEEEEEECCHHHHHHH
Confidence 1123346799999999999999999999997 999999999884 78999999999999999999
Q ss_pred HhcCCCeeCCeeeEEeecCCC
Q 017897 333 LNCSGAVLGSLPIRVSPSKTP 353 (364)
Q Consensus 333 l~lng~~~~g~~l~V~~ak~~ 353 (364)
+.+++..++|++|+|.|++++
T Consensus 146 ~~~~~~~~~g~~i~V~~a~pk 166 (167)
T 2cjk_A 146 CQNKFIDFKDRKIEIKRAEPR 166 (167)
T ss_dssp HHCSEECSSSSCEEEEECCCC
T ss_pred HhCCCEEeCCeEEEEeecCCC
Confidence 999999999999999999865
No 10
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=100.00 E-value=1.2e-31 Score=231.25 Aligned_cols=161 Identities=24% Similarity=0.344 Sum_probs=142.4
Q ss_pred CCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCCC----CCceEEEEEeCCHHHHHHHHH-ccccccC---CeeEE
Q 017897 177 IRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN----SVLRFAFVEFTDEEGARAALS-LAGTMLG---FYPVR 248 (364)
Q Consensus 177 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~~----~~rG~aFV~F~~~~~A~~al~-l~g~~l~---g~~i~ 248 (364)
..++|||+|||+++|+++|+++|++||.|.+++++.++. .++|||||+|.+.++|.+|++ +++..+. ++++.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 468999999999999999999999999999999999874 369999999999999999998 9998765 67888
Q ss_pred EeeCCCCCCCCCCCCCCCCccccccCceEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccC-CCCeeEEEEEecCHH
Q 017897 249 VLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY-QHSTRIAFVEFAMAE 327 (364)
Q Consensus 249 V~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~-~~~kg~afV~F~~~e 327 (364)
+.++.... ......++|||+|||..+++++|+++|++| |.|.++.++++. +.++|||||+|.+.+
T Consensus 82 ~~~~~~~~-------------~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~-G~i~~v~~~~~~~g~~~g~afV~f~~~~ 147 (175)
T 3nmr_A 82 MKPADSEK-------------NNAVEDRKLFIGMISKKCTENDIRVMFSSF-GQIEECRILRGPDGLSRGCAFVTFTTRA 147 (175)
T ss_dssp EEECGGGC-------------CSCGGGSEEEEESCCTTCCHHHHHHHHGGG-SCEEEEEEEECTTSCEEEEEEEEESSHH
T ss_pred Eccccccc-------------cccCCCCeEEEcCCCCcCCHHHHHHHHHhC-CCEEEEEEEECCCCCEEEEEEEEECCHH
Confidence 88864321 112345799999999999999999999997 999999999885 778999999999999
Q ss_pred HHHHHHh-cCCCeeC---CeeeEEeecC
Q 017897 328 SAIAALN-CSGAVLG---SLPIRVSPSK 351 (364)
Q Consensus 328 ~A~~Al~-lng~~~~---g~~l~V~~ak 351 (364)
+|.+|+. |||..+. +++|+|.|+.
T Consensus 148 ~A~~A~~~l~g~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 148 MAQTAIKAMHQAQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp HHHHHHHHHTTSCCCTTCSSCCEEEECC
T ss_pred HHHHHHHHhcCCcccCCCCCCeEEEecC
Confidence 9999999 9998776 4999999974
No 11
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.98 E-value=3.8e-31 Score=235.64 Aligned_cols=170 Identities=15% Similarity=0.184 Sum_probs=141.2
Q ss_pred CCcEEEEeCCC-CCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-ccccccCCeeEEEeeCCC
Q 017897 177 IRRTVYVSDID-QQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSKT 254 (364)
Q Consensus 177 ~~~~lfV~nLp-~~~te~~L~~~F~~~G~i~~~~i~~d~~~~rG~aFV~F~~~~~A~~al~-l~g~~l~g~~i~V~~a~~ 254 (364)
..++|||+||| ..+++++|+++|++||.|.+|+++.++ +|||||+|.+.++|++||+ |||..+.|++|.|.+++.
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~---~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~ 79 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSK---PGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQ 79 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTS---TTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCC---CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccC
Confidence 36899999999 899999999999999999999998763 6999999999999999998 999999999999999864
Q ss_pred CCC-CCCC----C-------CCC----CCcc-------ccccCceEEEEeCCCCCCCHHHHHHHhhhcCCce--eEEEEe
Q 017897 255 AIA-PVNP----T-------FLP----RSED-------EREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEV--QRLRLL 309 (364)
Q Consensus 255 ~~~-~~~~----~-------~~~----~~~~-------~~~~~~~~l~V~nLp~~~tee~L~~~F~~~~G~I--~~v~i~ 309 (364)
... +..+ . +.. +... ....+.++|||+|||+.+++++|+++|++| |.| .+++++
T Consensus 80 ~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~-G~v~~~~v~~~ 158 (205)
T 3tyt_A 80 PAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDEL-GVKRPTSVKVF 158 (205)
T ss_dssp SCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHH-TCCCCSEEEEC
T ss_pred CccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhc-CCcceEEEEEE
Confidence 321 1100 0 000 0000 012356799999999999999999999997 999 899999
Q ss_pred ccCCCCeeEEEEEecCHHHHHHHHh-cCCCeeCCe----eeEEeec
Q 017897 310 GDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSL----PIRVSPS 350 (364)
Q Consensus 310 ~d~~~~kg~afV~F~~~e~A~~Al~-lng~~~~g~----~l~V~~a 350 (364)
++.+.++|+|||+|.+.++|.+||. |||..|.|+ ++.|.|+
T Consensus 159 ~~~~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 159 SGKSERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp SCCSSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEEE
T ss_pred cCCCCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEec
Confidence 8877677999999999999999999 999999887 5666553
No 12
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.97 E-value=1.2e-31 Score=231.74 Aligned_cols=163 Identities=18% Similarity=0.254 Sum_probs=140.6
Q ss_pred CCCCCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCC--CCCceEEEEEeCCHHHHHHHHHccccccCCeeEEEee
Q 017897 174 DEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP--NSVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLP 251 (364)
Q Consensus 174 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~--~~~rG~aFV~F~~~~~A~~al~l~g~~l~g~~i~V~~ 251 (364)
.+...++|||+|||+++++++|+++|+.||.+..+ ++.+. +.++|||||+|.++++|.+|+++++..+.|++|.|.+
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~-~~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~v~~ 87 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDL-AVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEK 87 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTC-CCCEEEEETTTTEEEEEESSHHHHHHHHHGGGEEETTEEEEEEC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceE-EEEECCCCccccEEEEEECCHHHHHHHHhcCCCEeCCeEEEEec
Confidence 34567999999999999999999999999987652 22222 4578999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCccccccCceEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccCCCCeeEEEEEecCHHHHHH
Q 017897 252 SKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIA 331 (364)
Q Consensus 252 a~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~e~A~~ 331 (364)
+..... ......++|||+|||..+++++|+++|++| |.|..+ ...+.++|||||+|.+.++|.+
T Consensus 88 ~~~~~~------------~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~-g~v~~~---~~~~~~~g~afV~f~~~~~A~~ 151 (175)
T 1fje_B 88 PKGRDS------------KKVRAARTLLAKNLSFNITEDELKEVFEDA-LEIRLV---SQDGKSKGIAYIEFKSEADAEK 151 (175)
T ss_dssp CCCSSC------------STTGGGGEEEEESCCSSCCHHHHHHHCTTC-SEEEEE---CSSSSCCSEEEEECSSHHHHHH
T ss_pred CCCccc------------cccccCCEEEEeCCCCCCCHHHHHHHHHhc-CeEEEe---cCCCCCceEEEEEECCHHHHHH
Confidence 854211 112356899999999999999999999996 998876 4457899999999999999999
Q ss_pred HHh-cCCCeeCCeeeEEeecCCC
Q 017897 332 ALN-CSGAVLGSLPIRVSPSKTP 353 (364)
Q Consensus 332 Al~-lng~~~~g~~l~V~~ak~~ 353 (364)
|+. |||..++|+.|+|.|++++
T Consensus 152 A~~~l~g~~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 152 NLEEKQGAEIDGRSVSLYYTGEK 174 (175)
T ss_dssp HHHHHTEEEETTEEEEEEECSSC
T ss_pred HHHHhCCCEECCeEEEEEecCCC
Confidence 999 9999999999999999865
No 13
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.97 E-value=1.1e-30 Score=224.72 Aligned_cols=155 Identities=21% Similarity=0.344 Sum_probs=140.4
Q ss_pred CCcEEEEeCCCCCCcHHHHHHHhhcC----C-------CeeEEEEecCCCCCceEEEEEeCCHHHHHHHHHccccccCCe
Q 017897 177 IRRTVYVSDIDQQVTEEQLATLFLTC----G-------QVVDCRICGDPNSVLRFAFVEFTDEEGARAALSLAGTMLGFY 245 (364)
Q Consensus 177 ~~~~lfV~nLp~~~te~~L~~~F~~~----G-------~i~~~~i~~d~~~~rG~aFV~F~~~~~A~~al~l~g~~l~g~ 245 (364)
..++|||+|||+++|+++|+++|++| | .|.++++..+ +|||||+|.++++|.+|+.+++..+.|+
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~~----~g~afV~f~~~~~A~~A~~~~~~~~~g~ 78 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD----KNFAFLEFRSVDETTQAMAFDGIIFQGQ 78 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEETT----TTEEEEEESSHHHHHHHGGGTTCEETTE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecCC----CCEEEEEeCCHHHHHHHHHhCCcEecCc
Confidence 36899999999999999999999999 7 7888887654 5899999999999999999999999999
Q ss_pred eEEEeeCCCCCCCCCCCCCCCCccccccCceEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccC--CCCeeEEEEEe
Q 017897 246 PVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEF 323 (364)
Q Consensus 246 ~i~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~--~~~kg~afV~F 323 (364)
+|.|.++..... ....++|||+|||..+++++|+++|++| |.|..+.++++. +.++|||||+|
T Consensus 79 ~i~v~~~~~~~~--------------~~~~~~l~v~nlp~~~t~~~l~~~f~~~-G~v~~v~i~~~~~~g~~~g~afV~f 143 (172)
T 2g4b_A 79 SLKIRRPHDYQP--------------LPGAHKLFIGGLPNYLNDDQVKELLTSF-GPLKAFNLVKDSATGLSKGYAFCEY 143 (172)
T ss_dssp ECEEECCSSCCC--------------CTTTTCEEEECCCTTCCHHHHHHHHHTT-SCEEEEEEEECTTTCSEEEEEEEEE
T ss_pred eeeecCCcccCC--------------CCCCCEEEEEcCCCcCCHHHHHHHHHhc-CCceEEEEEecCCCCCcceEEEEEe
Confidence 999998753211 1235899999999999999999999997 999999999984 78899999999
Q ss_pred cCHHHHHHHHh-cCCCeeCCeeeEEeec
Q 017897 324 AMAESAIAALN-CSGAVLGSLPIRVSPS 350 (364)
Q Consensus 324 ~~~e~A~~Al~-lng~~~~g~~l~V~~a 350 (364)
.+.++|.+|+. |||..++|++|+|.||
T Consensus 144 ~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 144 VDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp SSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 99999999999 9999999999999997
No 14
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.97 E-value=2.6e-30 Score=227.50 Aligned_cols=174 Identities=19% Similarity=0.290 Sum_probs=146.0
Q ss_pred CCcEEEEeCCCCCCcHHHHHHHhhcC----C-------CeeEEEEecCCCCCceEEEEEeCCHHHHHHHHHccccccCCe
Q 017897 177 IRRTVYVSDIDQQVTEEQLATLFLTC----G-------QVVDCRICGDPNSVLRFAFVEFTDEEGARAALSLAGTMLGFY 245 (364)
Q Consensus 177 ~~~~lfV~nLp~~~te~~L~~~F~~~----G-------~i~~~~i~~d~~~~rG~aFV~F~~~~~A~~al~l~g~~l~g~ 245 (364)
..++|||+|||+++++++|+++|+.| | .|.++++.. ++|||||+|.+.++|.+|+++++..+.|+
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~~----~~g~afV~F~~~~~A~~Al~l~g~~~~g~ 78 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ----DKNFAFLEFRSVDETTQAMAFDGIIFQGQ 78 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEET----TTTEEEEEESCSHHHHHHGGGTTEEETTE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEecC----CCCEEEEEeCCHHHHHHHHHhcCCEEcCc
Confidence 36899999999999999999999999 5 677777644 46899999999999999999999999999
Q ss_pred eEEEeeCCCCCCCCCCCCC-----C-CCccccccCceEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccC--CCCee
Q 017897 246 PVRVLPSKTAIAPVNPTFL-----P-RSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTR 317 (364)
Q Consensus 246 ~i~V~~a~~~~~~~~~~~~-----~-~~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~--~~~kg 317 (364)
+|.|.++............ + ..........++|||+|||..+++++|+++|++| |.|..|.++++. +.++|
T Consensus 79 ~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~-G~v~~~~~~~~~~~~~~~g 157 (198)
T 2yh0_A 79 SLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSF-GPLKAFNLVKDSATGLSKG 157 (198)
T ss_dssp EEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTB-SCEEEEEEEECTTTCSEEE
T ss_pred eEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHc-CCccEEEEeecCCCCCcce
Confidence 9999998653221111000 0 0111123567999999999999999999999997 999999999884 67899
Q ss_pred EEEEEecCHHHHHHHHh-cCCCeeCCeeeEEeecCCCCC
Q 017897 318 IAFVEFAMAESAIAALN-CSGAVLGSLPIRVSPSKTPVR 355 (364)
Q Consensus 318 ~afV~F~~~e~A~~Al~-lng~~~~g~~l~V~~ak~~~~ 355 (364)
||||+|.+.++|.+|+. |||..++|+.|+|.|++++..
T Consensus 158 ~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 196 (198)
T 2yh0_A 158 YAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAK 196 (198)
T ss_dssp EEEEEESSSSHHHHHHHHHTTCEETTEECEEEESCCCCC
T ss_pred EEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCC
Confidence 99999999999999999 999999999999999987643
No 15
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.97 E-value=3e-30 Score=233.56 Aligned_cols=175 Identities=28% Similarity=0.348 Sum_probs=146.8
Q ss_pred cCCCCCcEEEEeCCCC-CCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-ccccccCCeeEEEe
Q 017897 173 QDEVIRRTVYVSDIDQ-QVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVL 250 (364)
Q Consensus 173 ~~~~~~~~lfV~nLp~-~~te~~L~~~F~~~G~i~~~~i~~d~~~~rG~aFV~F~~~~~A~~al~-l~g~~l~g~~i~V~ 250 (364)
......++|||+|||+ ++++++|+++|+.||.|.+|+++.++ +|||||+|.+.++|.+|++ +++..+.|++|.|.
T Consensus 29 ~~~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~---~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~ 105 (229)
T 2adc_A 29 LAGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK---KENALVQMADGNQAQLAMSHLNGHKLHGKPIRIT 105 (229)
T ss_dssp GGCCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT---SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEE
T ss_pred CCCCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC---CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 3345678999999999 99999999999999999999999886 6899999999999999998 99999999999999
Q ss_pred eCCCCCCCCCCC------------------CC-CCC--ccccccCceEEEEeCCCCCCCHHHHHHHhhhcCC-ceeEEEE
Q 017897 251 PSKTAIAPVNPT------------------FL-PRS--EDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCG-EVQRLRL 308 (364)
Q Consensus 251 ~a~~~~~~~~~~------------------~~-~~~--~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~~~G-~I~~v~i 308 (364)
++.......... +. +.. ......+.++|||+|||..+++++|+++|++| | .|..|.+
T Consensus 106 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~-G~~i~~v~i 184 (229)
T 2adc_A 106 LSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSN-GGVVKGFKF 184 (229)
T ss_dssp CCSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTT-SCCEEEEEE
T ss_pred EecCccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHc-CCCeeEEEE
Confidence 986431111000 00 000 00113457899999999999999999999997 9 9999999
Q ss_pred eccCCCCeeEEEEEecCHHHHHHHHh-cCCCeeC-CeeeEEeecCCCC
Q 017897 309 LGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLG-SLPIRVSPSKTPV 354 (364)
Q Consensus 309 ~~d~~~~kg~afV~F~~~e~A~~Al~-lng~~~~-g~~l~V~~ak~~~ 354 (364)
+++ .+|||||+|.+.++|.+|+. |||..++ |+.|+|.|+++++
T Consensus 185 ~~~---~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~~i 229 (229)
T 2adc_A 185 FQK---DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKSTI 229 (229)
T ss_dssp CSS---STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSSCC
T ss_pred EEC---CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecCCC
Confidence 764 35799999999999999999 9999999 9999999998763
No 16
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.97 E-value=1.2e-31 Score=240.05 Aligned_cols=157 Identities=20% Similarity=0.315 Sum_probs=139.6
Q ss_pred hcccCCccccccHHHHHHHHhccCCcceEEecCCCCCCcccccCCCCCCCCCeEEeeecccCCCCCccccccchhhhhhc
Q 017897 76 ERKMGESFKDCEMRDLVDMLSKLNPMAAEFVPPSLANGQIFNFNPAFFGPNGFGYTNNFIMHTDGTANTNGHTTTRRKRN 155 (364)
Q Consensus 76 ~~~~g~~~~~~~~~~L~~~Fs~~G~i~~v~v~~d~~t~~s~~~~~~~~~~~GfaFV~f~~~~~~~~~~~~a~~~~a~~~~ 155 (364)
..++|+|+|++|+++|+++|++||+|.+|+|++|+.|+++ + |||||.|.+ .. +|.. |++.+
T Consensus 17 tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~-~---------G~afV~F~~-~~------~A~~--Ai~~~ 77 (213)
T 4f02_A 17 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRS-L---------GYAYVNFQQ-PA------DAER--ALDTM 77 (213)
T ss_dssp EEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCE-E---------EEEEEEESS-HH------HHHH--HHHHH
T ss_pred EEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCc-c---------ccccceeCC-HH------HHHH--HHHHh
Confidence 5788999999999999999999999999999999999998 8 999999999 66 6888 99988
Q ss_pred CCC--CCccccccCCcccc----cCCCCCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHH
Q 017897 156 GYS--QGKRRMNCRTSNAQ----QDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEE 229 (364)
Q Consensus 156 ~~~--~g~~~~~~~~~~~~----~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~~~~rG~aFV~F~~~~ 229 (364)
++. .|+. +++.++. ......++|||+|||+++|+++|+++|+.||.|.+|+|+.|.++++|||||+|.+.+
T Consensus 78 ~~~~~~g~~---i~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~ 154 (213)
T 4f02_A 78 NFDVIKGKP---VRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQE 154 (213)
T ss_dssp TTCEETTEE---CEEEECCCCTHHHHHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHH
T ss_pred hhhhcCCcc---cccccccccccccccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHH
Confidence 877 6766 3333322 222345789999999999999999999999999999999998888999999999999
Q ss_pred HHHHHHH-ccccccCCeeEEEeeCCC
Q 017897 230 GARAALS-LAGTMLGFYPVRVLPSKT 254 (364)
Q Consensus 230 ~A~~al~-l~g~~l~g~~i~V~~a~~ 254 (364)
+|.+||+ |||..|.|++|.|.++.+
T Consensus 155 ~a~~Ai~~lng~~~~g~~i~V~~a~~ 180 (213)
T 4f02_A 155 AAERAIEKMNGMLLNDRKVFVGRFKS 180 (213)
T ss_dssp HHHHHHHHHTTCEETTEECEEEECCC
T ss_pred HHHHHHHHhCCCEECCEEEEEEEcCC
Confidence 9999998 999999999999999853
No 17
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.97 E-value=7.6e-30 Score=237.48 Aligned_cols=173 Identities=23% Similarity=0.339 Sum_probs=144.4
Q ss_pred CCCCcEEEEeCCCCCCcHHHHH----HHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-ccccccCCeeEEE
Q 017897 175 EVIRRTVYVSDIDQQVTEEQLA----TLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRV 249 (364)
Q Consensus 175 ~~~~~~lfV~nLp~~~te~~L~----~~F~~~G~i~~~~i~~d~~~~rG~aFV~F~~~~~A~~al~-l~g~~l~g~~i~V 249 (364)
....++|||+|||.++++++|+ ++|+.||.|.+|+++. .++++|||||+|.+.++|.+|++ |+|..+.|++|.|
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 84 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR-SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRI 84 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC-CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEE
Confidence 4457899999999999999976 8999999999999987 45678999999999999999997 9999999999999
Q ss_pred eeCCCCCCCC---CCCC---------------------------------------------------------------
Q 017897 250 LPSKTAIAPV---NPTF--------------------------------------------------------------- 263 (364)
Q Consensus 250 ~~a~~~~~~~---~~~~--------------------------------------------------------------- 263 (364)
.|++...... ...+
T Consensus 85 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 164 (282)
T 3pgw_A 85 QYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPYM 164 (282)
T ss_pred EEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCCCCCC
Confidence 9985422100 0000
Q ss_pred -------------------------------CCCCccccccCceEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccC
Q 017897 264 -------------------------------LPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY 312 (364)
Q Consensus 264 -------------------------------~~~~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~ 312 (364)
.+..........++|||+|||..+++++|+++|++| |.|.+|+++++.
T Consensus 165 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~-G~i~~v~~~~~~ 243 (282)
T 3pgw_A 165 PPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQF-PGFKEVRLVPGR 243 (282)
T ss_pred CCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhc-CCeEEEEEecCC
Confidence 000000123356899999999999999999999997 999999999764
Q ss_pred CCCeeEEEEEecCHHHHHHHHh-cCCCeeC-CeeeEEeecCC
Q 017897 313 QHSTRIAFVEFAMAESAIAALN-CSGAVLG-SLPIRVSPSKT 352 (364)
Q Consensus 313 ~~~kg~afV~F~~~e~A~~Al~-lng~~~~-g~~l~V~~ak~ 352 (364)
+|||||+|.+.++|.+|+. |||..|+ |+.|+|+|++.
T Consensus 244 ---~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~akk 282 (282)
T 3pgw_A 244 ---HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAKK 282 (282)
T ss_pred ---CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEecC
Confidence 5799999999999999999 9999999 99999999873
No 18
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.97 E-value=2e-30 Score=228.88 Aligned_cols=171 Identities=27% Similarity=0.350 Sum_probs=145.0
Q ss_pred CCcEEEEeCCCC-CCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-ccccccCCeeEEEeeCCC
Q 017897 177 IRRTVYVSDIDQ-QVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSKT 254 (364)
Q Consensus 177 ~~~~lfV~nLp~-~~te~~L~~~F~~~G~i~~~~i~~d~~~~rG~aFV~F~~~~~A~~al~-l~g~~l~g~~i~V~~a~~ 254 (364)
..++|||+|||+ ++++++|+++|+.||.|.+|+++.++ +|||||+|.+.++|.+|++ |+|..+.|++|.|.++..
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~---~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~ 78 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK---KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKH 78 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC---SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC---CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecC
Confidence 368999999999 99999999999999999999999886 6899999999999999998 999999999999999864
Q ss_pred CCCCCCCC------------------CCC---CCccccccCceEEEEeCCCCCCCHHHHHHHhhhcCC-ceeEEEEeccC
Q 017897 255 AIAPVNPT------------------FLP---RSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCG-EVQRLRLLGDY 312 (364)
Q Consensus 255 ~~~~~~~~------------------~~~---~~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~~~G-~I~~v~i~~d~ 312 (364)
........ +.+ ........+.++|||+|||..+++++|+++|++| | .|.+|.++++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~-G~~v~~v~i~~~- 156 (198)
T 1qm9_A 79 QNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSN-GGVVKGFKFFQK- 156 (198)
T ss_dssp CSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHT-TSCCCEEEESST-
T ss_pred CCcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHc-CCCceEEEEEeC-
Confidence 32111000 000 0000112457899999999999999999999997 9 9999999775
Q ss_pred CCCeeEEEEEecCHHHHHHHHh-cCCCeeC-CeeeEEeecCCCC
Q 017897 313 QHSTRIAFVEFAMAESAIAALN-CSGAVLG-SLPIRVSPSKTPV 354 (364)
Q Consensus 313 ~~~kg~afV~F~~~e~A~~Al~-lng~~~~-g~~l~V~~ak~~~ 354 (364)
.+|+|||+|.+.++|.+|+. |||..++ |++|+|.|+++++
T Consensus 157 --~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~i 198 (198)
T 1qm9_A 157 --DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKSTI 198 (198)
T ss_dssp --TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECCCC
T ss_pred --CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeecccC
Confidence 36799999999999999999 9999999 9999999998763
No 19
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.97 E-value=4.4e-30 Score=240.24 Aligned_cols=161 Identities=20% Similarity=0.309 Sum_probs=141.4
Q ss_pred CCCCCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHHccccccCCeeEEEeeCC
Q 017897 174 DEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSK 253 (364)
Q Consensus 174 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~~~~rG~aFV~F~~~~~A~~al~l~g~~l~g~~i~V~~a~ 253 (364)
.+...++|||+|||+++|+++|+++|+.||.|.+|+++.++..++|||||+|.+.++|.+|+++++..+.|++|.|.++.
T Consensus 37 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~i~v~~~~ 116 (292)
T 2ghp_A 37 RNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAITKTHKVVGQNEIIVSHLT 116 (292)
T ss_dssp -----CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTSSSEEEEEEESSHHHHHHHHTTTTCEETTEECEEEECC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEEECCHHHHHHHHHhCCcEeCCcEEEEEECC
Confidence 34457899999999999999999999999999999999998778999999999999999999999999999999999862
Q ss_pred CCCCCCCCCCCCCCccccccCceEEEEeCCCCCCCHHHHHHHhhhcCC-ceeEEEEeccC-CCCeeEEEEEecCHHHHHH
Q 017897 254 TAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCG-EVQRLRLLGDY-QHSTRIAFVEFAMAESAIA 331 (364)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~~~G-~I~~v~i~~d~-~~~kg~afV~F~~~e~A~~ 331 (364)
.++|||+|||..+++++|+++|++| | .|.+|.++++. +.++|||||+|.+.++|.+
T Consensus 117 ---------------------~~~l~v~nlp~~~t~~~l~~~f~~~-G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~ 174 (292)
T 2ghp_A 117 ---------------------ECTLWMTNFPPSYTQRNIRDLLQDI-NVVALSIRLPSLRFNTSRRFAYIDVTSKEDARY 174 (292)
T ss_dssp ---------------------SCEEEEECCCTTCCHHHHHHHHHHT-TCCCCEEECC-------CCEEEEECSSHHHHHH
T ss_pred ---------------------CCEEEEECCCCCCCHHHHHHHHHHh-CCCeEEEEEEeCCCCCcceEEEEEECCHHHHHH
Confidence 4799999999999999999999997 9 99999999876 6789999999999999999
Q ss_pred HHh-cCCCeeCCeeeEEeecCCCCCC
Q 017897 332 ALN-CSGAVLGSLPIRVSPSKTPVRP 356 (364)
Q Consensus 332 Al~-lng~~~~g~~l~V~~ak~~~~~ 356 (364)
|+. |||..++|+.|.|.|+.+....
T Consensus 175 A~~~l~g~~~~g~~l~v~~a~~~~~~ 200 (292)
T 2ghp_A 175 CVEKLNGLKIEGYTLVTKVSNPLEKS 200 (292)
T ss_dssp HHHHHTTCEETTEECEEEECCCC---
T ss_pred HHHHhCCCEeCCcEEEEEECCCCccc
Confidence 999 9999999999999999876443
No 20
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.96 E-value=1e-28 Score=230.02 Aligned_cols=153 Identities=20% Similarity=0.248 Sum_probs=141.3
Q ss_pred CCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-ccccccCCeeEEEeeCCCC
Q 017897 177 IRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSKTA 255 (364)
Q Consensus 177 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~~~~rG~aFV~F~~~~~A~~al~-l~g~~l~g~~i~V~~a~~~ 255 (364)
..++|||+|||+++|+++|+++|+.|| |.++.+ +.++|||||+|.+.++|.+|++ +++..+.|++|.|.++.
T Consensus 21 ~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~----~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~-- 93 (284)
T 3smz_A 21 NRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV----DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQP-- 93 (284)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE----ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC--
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE----ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEecC--
Confidence 468999999999999999999999999 999988 4457899999999999999997 99999999999999852
Q ss_pred CCCCCCCCCCCCccccccCceEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccC--CCCeeEEEEEecCHHHHHHHH
Q 017897 256 IAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAAL 333 (364)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~--~~~kg~afV~F~~~e~A~~Al 333 (364)
..++|||+|||..+++++|+++|++| |.|.++.++++. +.++|||||+|.+.++|.+|+
T Consensus 94 ------------------~~~~l~v~nlp~~~t~~~l~~~f~~~-G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~ 154 (284)
T 3smz_A 94 ------------------TDALLCVANLPPSLTQQQFEELVRPF-GSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAK 154 (284)
T ss_dssp ------------------CSCEEEEESCCTTCCHHHHHHHHGGG-SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHH
T ss_pred ------------------CCCEEEEcCCCCcCCHHHHHHHHHhc-CCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHH
Confidence 23799999999999999999999997 999999999874 789999999999999999999
Q ss_pred h-cCCCeeCCeeeEEeecCCCCC
Q 017897 334 N-CSGAVLGSLPIRVSPSKTPVR 355 (364)
Q Consensus 334 ~-lng~~~~g~~l~V~~ak~~~~ 355 (364)
. |+|..++|+.|.|.|+.+...
T Consensus 155 ~~l~~~~~~g~~i~v~~a~~~~~ 177 (284)
T 3smz_A 155 SDLLGKPLGPRTLYVHWTDAGQL 177 (284)
T ss_dssp HHHTTCEETTEECEEEECCGGGC
T ss_pred HHhCCCEeCCcEEEEEECCCCCC
Confidence 8 999999999999999987643
No 21
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.96 E-value=6e-30 Score=219.16 Aligned_cols=158 Identities=15% Similarity=0.200 Sum_probs=136.7
Q ss_pred hhcccCCccccccHHHHHHHHhccCCcceEEecCCCCCCcccccCCCCCCCCCeEEeeecccCCCCCccccccchhhhhh
Q 017897 75 MERKMGESFKDCEMRDLVDMLSKLNPMAAEFVPPSLANGQIFNFNPAFFGPNGFGYTNNFIMHTDGTANTNGHTTTRRKR 154 (364)
Q Consensus 75 ~~~~~g~~~~~~~~~~L~~~Fs~~G~i~~v~v~~d~~t~~s~~~~~~~~~~~GfaFV~f~~~~~~~~~~~~a~~~~a~~~ 154 (364)
...++|+|++++++++|+++|++||+|.+|++++|+.++++ + |||||.|.+ .+ +|.. |++.
T Consensus 4 ~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~-~---------g~afV~f~~-~~------~a~~--A~~~ 64 (167)
T 2cjk_A 4 CKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRS-R---------GFGFLSFEK-PS------SVDE--VVKT 64 (167)
T ss_dssp GEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSC-C---------SCEEEEESS-TH------HHHH--HHHS
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCc-c---------ceEEEEEcc-HH------HHHH--HHhc
Confidence 45678999999999999999999999999999999999988 8 999999999 66 5877 8886
Q ss_pred cCCCCCccccccCCccc--ccCCCCCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCC--CCCceEEEEEeCCHHH
Q 017897 155 NGYSQGKRRMNCRTSNA--QQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP--NSVLRFAFVEFTDEEG 230 (364)
Q Consensus 155 ~~~~~g~~~~~~~~~~~--~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~--~~~rG~aFV~F~~~~~ 230 (364)
.....|+. +++.++ .......++|||+|||.++++++|+++|+.||.|.+++++.++ +.++|||||+|.+.++
T Consensus 65 ~~~~~g~~---i~v~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~ 141 (167)
T 2cjk_A 65 QHILDGKV---IDPKRAIPRDEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADA 141 (167)
T ss_dssp CCEETTEE---CCCEECCCHHHHHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHH
T ss_pred ccccCCeE---cccccccchhhccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHH
Confidence 44347776 333322 2223346789999999999999999999999999999999986 4579999999999999
Q ss_pred HHHHHHccccccCCeeEEEeeCCC
Q 017897 231 ARAALSLAGTMLGFYPVRVLPSKT 254 (364)
Q Consensus 231 A~~al~l~g~~l~g~~i~V~~a~~ 254 (364)
|.+|+++++..+.|++|.|.++.+
T Consensus 142 a~~A~~~~~~~~~g~~i~V~~a~p 165 (167)
T 2cjk_A 142 VDRVCQNKFIDFKDRKIEIKRAEP 165 (167)
T ss_dssp HHHHHHCSEECSSSSCEEEEECCC
T ss_pred HHHHHhCCCEEeCCeEEEEeecCC
Confidence 999999999999999999999853
No 22
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.96 E-value=1.4e-28 Score=227.03 Aligned_cols=155 Identities=27% Similarity=0.390 Sum_probs=141.1
Q ss_pred CCCCCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-ccccccCCeeEEEeeC
Q 017897 174 DEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPS 252 (364)
Q Consensus 174 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~~~~rG~aFV~F~~~~~A~~al~-l~g~~l~g~~i~V~~a 252 (364)
.....++|||+|||+++|+++|+++|+.||.|.+|++.++ +|||||+|.+.++|.+|+. ++|..+.|++|.|.++
T Consensus 18 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~----kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 93 (261)
T 3sde_A 18 TYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD----RGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFA 93 (261)
T ss_dssp SSCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT----TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC----CcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeec
Confidence 3445689999999999999999999999999999999765 5899999999999999998 9999999999999997
Q ss_pred CCCCCCCCCCCCCCCccccccCceEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccC-CCCeeEEEEEecCHHHHHH
Q 017897 253 KTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY-QHSTRIAFVEFAMAESAIA 331 (364)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~-~~~kg~afV~F~~~e~A~~ 331 (364)
.. ..+|||+|||..+++++|+++|++| |.|.+|.++++. +.++|||||+|.+.++|.+
T Consensus 94 ~~--------------------~~~l~v~nl~~~~t~~~l~~~F~~~-G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~ 152 (261)
T 3sde_A 94 TH--------------------GAALTVKNLSPVVSNELLEQAFSQF-GPVEKAVVVVDDRGRATGKGFVEFAAKPPARK 152 (261)
T ss_dssp CC--------------------SSEEEEESCCTTCCHHHHHHHHGGG-SCEEEEEEEEETTSCEEEEEEEEESSHHHHHH
T ss_pred cc--------------------CCcccccCCCCCCCHHHHHHHHHhc-CCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHH
Confidence 42 3689999999999999999999997 999999999885 7889999999999999999
Q ss_pred HHh-c-CCCeeC---CeeeEEeecCCC
Q 017897 332 ALN-C-SGAVLG---SLPIRVSPSKTP 353 (364)
Q Consensus 332 Al~-l-ng~~~~---g~~l~V~~ak~~ 353 (364)
|+. | ++..+. +++|.|.|+++.
T Consensus 153 A~~~l~~~~~~~~~~~r~i~v~~~~~~ 179 (261)
T 3sde_A 153 ALERCGDGAFLLTTTPRPVIVEPMEQF 179 (261)
T ss_dssp HHHHHHHSCEESSSSCCBCEEEECCCE
T ss_pred HHHHhcCCeEEecCCCceEEEeecccc
Confidence 999 8 555665 999999999765
No 23
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.96 E-value=8.4e-29 Score=211.24 Aligned_cols=158 Identities=16% Similarity=0.176 Sum_probs=134.3
Q ss_pred hcccCCccccccHHHHHHHHhccCCcceEEecCCCCCCcccccCCCCCCCCCeEEeeecccCCCCCccccccchhhhhhc
Q 017897 76 ERKMGESFKDCEMRDLVDMLSKLNPMAAEFVPPSLANGQIFNFNPAFFGPNGFGYTNNFIMHTDGTANTNGHTTTRRKRN 155 (364)
Q Consensus 76 ~~~~g~~~~~~~~~~L~~~Fs~~G~i~~v~v~~d~~t~~s~~~~~~~~~~~GfaFV~f~~~~~~~~~~~~a~~~~a~~~~ 155 (364)
..++|+|++++++++|+++|++||+|.+|++++++.+. + + |||||.|.+ .+ +|.. |++.+
T Consensus 2 ~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~-~-~---------g~afV~f~~-~~------~a~~--A~~~l 61 (166)
T 3md3_A 2 VLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNK-N-V---------NYAFVEYHQ-SH------DANI--ALQTL 61 (166)
T ss_dssp EEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-C-C-E---------EEEEEEESS-HH------HHHH--HHHHH
T ss_pred EEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCC-C-C---------CEEEEEeCC-HH------HHHH--HHHHc
Confidence 35789999999999999999999999999999998754 4 5 999999999 56 6888 89888
Q ss_pred CCC--CCcc-ccccCCcccccCCCCCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEeCCHHH
Q 017897 156 GYS--QGKR-RMNCRTSNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEG 230 (364)
Q Consensus 156 ~~~--~g~~-~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~~--~~rG~aFV~F~~~~~ 230 (364)
+.. .|++ .+.+............++|||+|||.++++++|+++|++||.|.+++++.++. .++|||||+|.+.++
T Consensus 62 ~~~~~~g~~i~v~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~ 141 (166)
T 3md3_A 62 NGKQIENNIVKINWAFQSQQSSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDD 141 (166)
T ss_dssp TTCEETTEECEEEECCCCCCCCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHH
T ss_pred CCCccCCCeeEEEEcCCCCCCCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHH
Confidence 776 6666 22222222233445567899999999999999999999999999999998863 469999999999999
Q ss_pred HHHHHH-ccccccCCeeEEEeeCC
Q 017897 231 ARAALS-LAGTMLGFYPVRVLPSK 253 (364)
Q Consensus 231 A~~al~-l~g~~l~g~~i~V~~a~ 253 (364)
|.+|++ |+|..+.|++|.|.|++
T Consensus 142 A~~A~~~l~g~~~~g~~i~v~~a~ 165 (166)
T 3md3_A 142 AQNAMDSMQGQDLNGRPLRINWAA 165 (166)
T ss_dssp HHHHHHHHTTCEETTEECEEEESC
T ss_pred HHHHHHHhCCCccCCcEEEEEecC
Confidence 999998 99999999999999985
No 24
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.96 E-value=1.5e-28 Score=219.15 Aligned_cols=161 Identities=13% Similarity=0.251 Sum_probs=136.3
Q ss_pred chhcccCCccccccHHHHHHHHhccCCcceEEecCCCCCCcccccCCCCCCCCCeEEeeecccCCCCCccccccchhhhh
Q 017897 74 HMERKMGESFKDCEMRDLVDMLSKLNPMAAEFVPPSLANGQIFNFNPAFFGPNGFGYTNNFIMHTDGTANTNGHTTTRRK 153 (364)
Q Consensus 74 ~~~~~~g~~~~~~~~~~L~~~Fs~~G~i~~v~v~~d~~t~~s~~~~~~~~~~~GfaFV~f~~~~~~~~~~~~a~~~~a~~ 153 (364)
....++++|++++++++|+++|++||+|.+|++++|+.++++ + |||||.|.+ .+ +|.. |++
T Consensus 28 ~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~-~---------g~afV~f~~-~~------~A~~--A~~ 88 (216)
T 2qfj_A 28 MSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKH-K---------GFAFVEYEV-PE------AAQL--ALE 88 (216)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CC-C---------SEEEEEESS-HH------HHHH--HHH
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCcc-C---------ceEEEEeCC-HH------HHHH--HHH
Confidence 345788999999999999999999999999999999999988 7 999999999 56 6888 898
Q ss_pred hcCCC--CCccccccCCccccc-------------CCCCCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCC--CC
Q 017897 154 RNGYS--QGKRRMNCRTSNAQQ-------------DEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP--NS 216 (364)
Q Consensus 154 ~~~~~--~g~~~~~~~~~~~~~-------------~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~--~~ 216 (364)
.++.. .|+. +++.++.. .....++|||+|||.++++++|+++|+.||.|..++++.++ +.
T Consensus 89 ~l~~~~~~g~~---l~v~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~ 165 (216)
T 2qfj_A 89 QMNSVMLGGRN---IKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGK 165 (216)
T ss_dssp HHSSCCCC-CC---CEEECCSCCGGGHHHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCC
T ss_pred HccCCeeCCee---EEEecCCCccccchhhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCC
Confidence 77665 5665 33322221 12345799999999999999999999999999999999986 35
Q ss_pred CceEEEEEeCCHHHHHHHHH-ccccccCCeeEEEeeCCCCC
Q 017897 217 VLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSKTAI 256 (364)
Q Consensus 217 ~rG~aFV~F~~~~~A~~al~-l~g~~l~g~~i~V~~a~~~~ 256 (364)
++|||||+|.+.++|.+|++ |+|..|.|++|.|.++....
T Consensus 166 ~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a~~~~ 206 (216)
T 2qfj_A 166 HKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPP 206 (216)
T ss_dssp EEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEECSSCS
T ss_pred cCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEecCCC
Confidence 69999999999999999998 99999999999999987643
No 25
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.96 E-value=1.4e-28 Score=216.07 Aligned_cols=160 Identities=14% Similarity=0.170 Sum_probs=135.3
Q ss_pred cchhcccCCccccccHHHHHHHHhccCCcceEEecCCCCCCcccccCCCCCCCCCeEEeeecccCCCCCccccccchhhh
Q 017897 73 NHMERKMGESFKDCEMRDLVDMLSKLNPMAAEFVPPSLANGQIFNFNPAFFGPNGFGYTNNFIMHTDGTANTNGHTTTRR 152 (364)
Q Consensus 73 ~~~~~~~g~~~~~~~~~~L~~~Fs~~G~i~~v~v~~d~~t~~s~~~~~~~~~~~GfaFV~f~~~~~~~~~~~~a~~~~a~ 152 (364)
.....++|+|++++++++|+++|++||+|.+|+|++|+.++++ + |||||.|.+ .+ +|.. |+
T Consensus 12 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~-~---------g~afV~f~~-~~------~A~~--A~ 72 (196)
T 1l3k_A 12 QLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRS-R---------GFGFVTYAT-VE------EVDA--AM 72 (196)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCE-E---------EEEEEEESS-HH------HHHH--HH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCc-c---------ceEEEEeCC-HH------HHHH--HH
Confidence 3456788999999999999999999999999999999999988 8 999999999 56 6888 88
Q ss_pred hhcCCC-CCccccccCCccccc--------CCCCCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCC--CCCceEE
Q 017897 153 KRNGYS-QGKRRMNCRTSNAQQ--------DEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP--NSVLRFA 221 (364)
Q Consensus 153 ~~~~~~-~g~~~~~~~~~~~~~--------~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~--~~~rG~a 221 (364)
+..+.. .|+. +.+.++.. .....++|||+|||+++++++|+++|+.||.|..++++.++ +.++|||
T Consensus 73 ~~~~~~~~g~~---l~v~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~a 149 (196)
T 1l3k_A 73 NARPHKVDGRV---VEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFA 149 (196)
T ss_dssp HTCSCEETTEE---CEEEECCC-----------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEE
T ss_pred hcCCCEECCEE---eeeecccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceE
Confidence 774433 6666 33222211 12234789999999999999999999999999999999986 3469999
Q ss_pred EEEeCCHHHHHHHHHccccccCCeeEEEeeCCC
Q 017897 222 FVEFTDEEGARAALSLAGTMLGFYPVRVLPSKT 254 (364)
Q Consensus 222 FV~F~~~~~A~~al~l~g~~l~g~~i~V~~a~~ 254 (364)
||+|.+.++|.+|++.++..+.|+.|.|.++.+
T Consensus 150 fV~F~~~~~A~~A~~~~~~~~~G~~i~v~~a~~ 182 (196)
T 1l3k_A 150 FVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALS 182 (196)
T ss_dssp EEEESSHHHHHHHHHCSCCEETTEECEEEECC-
T ss_pred EEEECCHHHHHHHHHhCCcEECCEEEEEEecCC
Confidence 999999999999999789999999999999864
No 26
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.95 E-value=1.5e-28 Score=210.38 Aligned_cols=158 Identities=19% Similarity=0.283 Sum_probs=137.8
Q ss_pred hhcccCCccccccHHHHHHHHhccCCcceEEecCCCCCCcccccCCCCCCCCCeEEeeecccCCCCCccccccchhhhhh
Q 017897 75 MERKMGESFKDCEMRDLVDMLSKLNPMAAEFVPPSLANGQIFNFNPAFFGPNGFGYTNNFIMHTDGTANTNGHTTTRRKR 154 (364)
Q Consensus 75 ~~~~~g~~~~~~~~~~L~~~Fs~~G~i~~v~v~~d~~t~~s~~~~~~~~~~~GfaFV~f~~~~~~~~~~~~a~~~~a~~~ 154 (364)
...++|+|++++++++|+++|++||+|.+|++++++.++++ + |||||.|.+ .+ +|.. |++.
T Consensus 4 ~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~-~---------g~afV~f~~-~~------~A~~--a~~~ 64 (168)
T 1b7f_A 4 TNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYS-Y---------GYAFVDFTS-EM------DSQR--AIKV 64 (168)
T ss_dssp SEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEE-C---------SEEEEEESS-HH------HHHH--HHHH
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCcc-c---------eEEEEEECC-HH------HHHH--HHHh
Confidence 35678999999999999999999999999999999999988 8 999999999 66 6888 8987
Q ss_pred cCCC--CCccccccCCcccccCCCCCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCC--CCCceEEEEEeCCHHH
Q 017897 155 NGYS--QGKRRMNCRTSNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP--NSVLRFAFVEFTDEEG 230 (364)
Q Consensus 155 ~~~~--~g~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~--~~~rG~aFV~F~~~~~ 230 (364)
++.. .|++ +.+............++|||+|||.++++++|+++|++||.|..++++.++ +.++|||||+|.+.++
T Consensus 65 l~~~~~~g~~-l~v~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~ 143 (168)
T 1b7f_A 65 LNGITVRNKR-LKVSYARPGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREE 143 (168)
T ss_dssp HTTCEETTEE-CEEEECCCCSSTTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHH
T ss_pred cCCCEeCCcE-EEEEecCCCcccCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHH
Confidence 7776 6665 333333334445567899999999999999999999999999999999986 3468999999999999
Q ss_pred HHHHHH-ccccccCC--eeEEEeeC
Q 017897 231 ARAALS-LAGTMLGF--YPVRVLPS 252 (364)
Q Consensus 231 A~~al~-l~g~~l~g--~~i~V~~a 252 (364)
|.+|++ |+|..+.| ++|.|.+|
T Consensus 144 A~~A~~~l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 144 AQEAISALNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp HHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred HHHHHHHhcCCEecCCCeEEEEEeC
Confidence 999998 99999987 99999885
No 27
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.95 E-value=1.6e-28 Score=211.45 Aligned_cols=160 Identities=18% Similarity=0.249 Sum_probs=132.5
Q ss_pred hhcccCCccccccHHHHHHHHhccCCcceEEecCCCCCC--cccccCCCCCCCCCeEEeeecccCCCCCccccccchhhh
Q 017897 75 MERKMGESFKDCEMRDLVDMLSKLNPMAAEFVPPSLANG--QIFNFNPAFFGPNGFGYTNNFIMHTDGTANTNGHTTTRR 152 (364)
Q Consensus 75 ~~~~~g~~~~~~~~~~L~~~Fs~~G~i~~v~v~~d~~t~--~s~~~~~~~~~~~GfaFV~f~~~~~~~~~~~~a~~~~a~ 152 (364)
+..++|+|++++++++|+++|++||+|.+|++++++.++ ++ + |||||.|.+ .+ +|.. |+
T Consensus 4 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~-~---------g~afV~f~~-~~------~A~~--A~ 64 (175)
T 3nmr_A 4 IKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQS-K---------GCCFVTFYT-RK------AALE--AQ 64 (175)
T ss_dssp EEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEE-E---------EEEEEEESS-HH------HHHH--HH
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCc-c---------eEEEEEECC-HH------HHHH--HH
Confidence 457889999999999999999999999999999999997 66 7 999999999 56 5888 88
Q ss_pred hhcCCC--CCccccccCCcccc---cCCCCCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCCC-CCceEEEEEeC
Q 017897 153 KRNGYS--QGKRRMNCRTSNAQ---QDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN-SVLRFAFVEFT 226 (364)
Q Consensus 153 ~~~~~~--~g~~~~~~~~~~~~---~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~~-~~rG~aFV~F~ 226 (364)
+.++.. .+.....+.+.+.. ......++|||+|||+++|+++|+++|++||.|.+++++.++. .++|||||+|.
T Consensus 65 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~ 144 (175)
T 3nmr_A 65 NALHNMKVLPGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFT 144 (175)
T ss_dssp HHHTTTCCCTTCSSCCEEEECGGGCCSCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEES
T ss_pred HHhcCcEEccCCccceEEccccccccccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEEC
Confidence 877765 21111112222222 2233568999999999999999999999999999999999864 46999999999
Q ss_pred CHHHHHHHHH-ccccccC---CeeEEEeeCC
Q 017897 227 DEEGARAALS-LAGTMLG---FYPVRVLPSK 253 (364)
Q Consensus 227 ~~~~A~~al~-l~g~~l~---g~~i~V~~a~ 253 (364)
+.++|.+|++ |+|..+. |++|.|.|++
T Consensus 145 ~~~~A~~A~~~l~g~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 145 TRAMAQTAIKAMHQAQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp SHHHHHHHHHHHTTSCCCTTCSSCCEEEECC
T ss_pred CHHHHHHHHHHhcCCcccCCCCCCeEEEecC
Confidence 9999999997 9998765 4999999973
No 28
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.95 E-value=4.4e-28 Score=206.93 Aligned_cols=157 Identities=17% Similarity=0.240 Sum_probs=135.6
Q ss_pred hcccCCccccccHHHHHHHHhccCCcceEEecCCCCCCcccccCCCCCCCCCeEEeeecccCCCCCccccccchhhhhhc
Q 017897 76 ERKMGESFKDCEMRDLVDMLSKLNPMAAEFVPPSLANGQIFNFNPAFFGPNGFGYTNNFIMHTDGTANTNGHTTTRRKRN 155 (364)
Q Consensus 76 ~~~~g~~~~~~~~~~L~~~Fs~~G~i~~v~v~~d~~t~~s~~~~~~~~~~~GfaFV~f~~~~~~~~~~~~a~~~~a~~~~ 155 (364)
..++|+|++++++++|+++|++||+|.+|++++++.++++ + |||||.|.+ .+ +|.. |++.+
T Consensus 4 ~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~-~---------g~afV~f~~-~~------~A~~--a~~~l 64 (167)
T 1fxl_A 4 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQS-L---------GYGFVNYID-PK------DAEK--AINTL 64 (167)
T ss_dssp EEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCE-E---------EEEEEEESS-HH------HHHH--HHHHH
T ss_pred eEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcc-e---------eEEEEEECC-HH------HHHH--HHHHc
Confidence 4678999999999999999999999999999999999988 8 999999999 66 6888 89887
Q ss_pred CCC--CCccccccCCcccccCCCCCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEeCCHHHH
Q 017897 156 GYS--QGKRRMNCRTSNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGA 231 (364)
Q Consensus 156 ~~~--~g~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~~--~~rG~aFV~F~~~~~A 231 (364)
+.. .|++ +.+............++|||+|||..+++++|+++|++||.|.+++++.++. .++|||||+|.+.++|
T Consensus 65 ~~~~~~g~~-l~v~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A 143 (167)
T 1fxl_A 65 NGLRLQTKT-IKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEA 143 (167)
T ss_dssp TTCEETTEE-CEEEECCCCCGGGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHH
T ss_pred CCCccCCce-EEEEecCCCcccCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHH
Confidence 776 6665 2233333333444568999999999999999999999999999999999863 4699999999999999
Q ss_pred HHHHH-ccccccCCe--eEEEeeC
Q 017897 232 RAALS-LAGTMLGFY--PVRVLPS 252 (364)
Q Consensus 232 ~~al~-l~g~~l~g~--~i~V~~a 252 (364)
.+|++ |+|..+.|+ +|.|.||
T Consensus 144 ~~A~~~l~g~~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 144 EEAIKGLNGQKPSGATEPITVKFA 167 (167)
T ss_dssp HHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred HHHHHHhcCCccCCCccceEEEeC
Confidence 99998 999999996 4888875
No 29
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.93 E-value=6.8e-26 Score=194.73 Aligned_cols=151 Identities=15% Similarity=0.204 Sum_probs=126.7
Q ss_pred hhcccCCccccccHHHHHHHHhcc----C-------CcceEEecCCCCCCcccccCCCCCCCCCeEEeeecccCCCCCcc
Q 017897 75 MERKMGESFKDCEMRDLVDMLSKL----N-------PMAAEFVPPSLANGQIFNFNPAFFGPNGFGYTNNFIMHTDGTAN 143 (364)
Q Consensus 75 ~~~~~g~~~~~~~~~~L~~~Fs~~----G-------~i~~v~v~~d~~t~~s~~~~~~~~~~~GfaFV~f~~~~~~~~~~ 143 (364)
+..++|+|++++++++|+++|++| | +|.++++.++ + |||||.|.+ .+
T Consensus 5 ~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~~-------~---------g~afV~f~~-~~----- 62 (172)
T 2g4b_A 5 RRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD-------K---------NFAFLEFRS-VD----- 62 (172)
T ss_dssp GEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEETT-------T---------TEEEEEESS-HH-----
T ss_pred cEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecCC-------C---------CEEEEEeCC-HH-----
Confidence 466789999999999999999999 6 7777776543 5 999999999 66
Q ss_pred ccccchhhhhhcCCC--CCccccccCCcccccCCCCCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCC--CCCce
Q 017897 144 TNGHTTTRRKRNGYS--QGKRRMNCRTSNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP--NSVLR 219 (364)
Q Consensus 144 ~~a~~~~a~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~--~~~rG 219 (364)
+|.. |+ .++.. .|++ +.+............++|||+|||.++++++|+++|++||.|.+++++.++ +.++|
T Consensus 63 -~A~~--A~-~~~~~~~~g~~-i~v~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g 137 (172)
T 2g4b_A 63 -ETTQ--AM-AFDGIIFQGQS-LKIRRPHDYQPLPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKG 137 (172)
T ss_dssp -HHHH--HG-GGTTCEETTEE-CEEECCSSCCCCTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEE
T ss_pred -HHHH--HH-HhCCcEecCce-eeecCCcccCCCCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcce
Confidence 6888 88 66665 6766 222222233334456899999999999999999999999999999999986 34699
Q ss_pred EEEEEeCCHHHHHHHHH-ccccccCCeeEEEeeC
Q 017897 220 FAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPS 252 (364)
Q Consensus 220 ~aFV~F~~~~~A~~al~-l~g~~l~g~~i~V~~a 252 (364)
||||+|.+.++|.+|++ |+|..+.|++|.|.||
T Consensus 138 ~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 138 YAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp EEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred EEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 99999999999999998 9999999999999997
No 30
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.93 E-value=2.8e-26 Score=204.16 Aligned_cols=150 Identities=9% Similarity=-0.001 Sum_probs=125.5
Q ss_pred hcccCCcc-ccccHHHHHHHHhccCCcceEEecCCCCCCcccccCCCCCCCCCeEEeeecccCCCCCccccccchhhhhh
Q 017897 76 ERKMGESF-KDCEMRDLVDMLSKLNPMAAEFVPPSLANGQIFNFNPAFFGPNGFGYTNNFIMHTDGTANTNGHTTTRRKR 154 (364)
Q Consensus 76 ~~~~g~~~-~~~~~~~L~~~Fs~~G~i~~v~v~~d~~t~~s~~~~~~~~~~~GfaFV~f~~~~~~~~~~~~a~~~~a~~~ 154 (364)
..++|+|+ |++++++|+++|++||+|.+|+|+++ + + |||||.|.+ .+ +|+. |++.
T Consensus 6 ~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~-----~-~---------g~afV~f~~-~~------~A~~--Ai~~ 61 (205)
T 3tyt_A 6 VLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS-----K-P---------GAAMVEMAD-GY------AVDR--AITH 61 (205)
T ss_dssp EEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT-----S-T---------TCEEEEESS-HH------HHHH--HHHH
T ss_pred EEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC-----C-C---------CEEEEEECC-HH------HHHH--HHHH
Confidence 46789999 99999999999999999999999986 2 4 999999999 66 6888 9998
Q ss_pred cCCC--CCccccccCCccccc---------------------------------------CCCCCcEEEEeCCCCCCcHH
Q 017897 155 NGYS--QGKRRMNCRTSNAQQ---------------------------------------DEVIRRTVYVSDIDQQVTEE 193 (364)
Q Consensus 155 ~~~~--~g~~~~~~~~~~~~~---------------------------------------~~~~~~~lfV~nLp~~~te~ 193 (364)
+|+. .|++ +++.+++. .....++|||+|||+++|++
T Consensus 62 lng~~~~g~~---l~v~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~ 138 (205)
T 3tyt_A 62 LNNNFMFGQK---MNVCVSKQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEE 138 (205)
T ss_dssp HTTCEETTEE---CEEEECSCSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHH
T ss_pred hCCCEECCce---EEEEEccCCccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHH
Confidence 8887 6666 22211110 00124579999999999999
Q ss_pred HHHHHhhcCCCe--eEEEEecCCCCCceEEEEEeCCHHHHHHHHH-ccccccCCe----eEEEeeC
Q 017897 194 QLATLFLTCGQV--VDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFY----PVRVLPS 252 (364)
Q Consensus 194 ~L~~~F~~~G~i--~~~~i~~d~~~~rG~aFV~F~~~~~A~~al~-l~g~~l~g~----~i~V~~a 252 (364)
+|+++|++||.| .+++++.+.+.++|||||+|.+.++|.+||. |||..|.|+ ++.|+++
T Consensus 139 ~L~~~F~~~G~v~~~~v~~~~~~~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 139 NFFEICDELGVKRPTSVKVFSGKSERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp HHHHHHHHHTCCCCSEEEECSCCSSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEEE
T ss_pred HHHHHHHhcCCcceEEEEEEcCCCCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEec
Confidence 999999999999 8999998876667999999999999999998 999999875 7888764
No 31
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.93 E-value=2.1e-26 Score=198.86 Aligned_cols=154 Identities=15% Similarity=0.172 Sum_probs=129.1
Q ss_pred chhcccCCccccccHHHHHHHHhccCCcceEEecCCCCCCcccccCCCCCCCCCeEEeeecccCCCCCccccccchhhhh
Q 017897 74 HMERKMGESFKDCEMRDLVDMLSKLNPMAAEFVPPSLANGQIFNFNPAFFGPNGFGYTNNFIMHTDGTANTNGHTTTRRK 153 (364)
Q Consensus 74 ~~~~~~g~~~~~~~~~~L~~~Fs~~G~i~~v~v~~d~~t~~s~~~~~~~~~~~GfaFV~f~~~~~~~~~~~~a~~~~a~~ 153 (364)
....++|+|++++++++|+++|++||+|.. .++++..++++ + |||||.|.+ .+ +|.. |++
T Consensus 13 ~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~-~---------g~afV~f~~-~~------~a~~--A~~ 72 (175)
T 1fje_B 13 PFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTN-R---------KFGYVDFES-AE------DLEK--ALE 72 (175)
T ss_dssp SEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETT-T---------TEEEEEESS-HH------HHHH--HHH
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCcc-c---------cEEEEEECC-HH------HHHH--HHh
Confidence 346788999999999999999999999988 56777788877 7 999999999 66 6888 885
Q ss_pred hcCCC--CCccccccCCcccc----cCCCCCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCC
Q 017897 154 RNGYS--QGKRRMNCRTSNAQ----QDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTD 227 (364)
Q Consensus 154 ~~~~~--~g~~~~~~~~~~~~----~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~~~~rG~aFV~F~~ 227 (364)
++.. .|++ +++.++. ......++|||+|||.++++++|+++|+.||.|..+ ...+.++|||||+|.+
T Consensus 73 -l~g~~~~g~~---l~v~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~---~~~~~~~g~afV~f~~ 145 (175)
T 1fje_B 73 -LTGLKVFGNE---IKLEKPKGRDSKKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV---SQDGKSKGIAYIEFKS 145 (175)
T ss_dssp -GGGEEETTEE---EEEECCCCSSCSTTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE---CSSSSCCSEEEEECSS
T ss_pred -cCCCEeCCeE---EEEecCCCccccccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe---cCCCCCceEEEEEECC
Confidence 6554 6776 3333332 233456899999999999999999999999988766 4445689999999999
Q ss_pred HHHHHHHHH-ccccccCCeeEEEeeCCC
Q 017897 228 EEGARAALS-LAGTMLGFYPVRVLPSKT 254 (364)
Q Consensus 228 ~~~A~~al~-l~g~~l~g~~i~V~~a~~ 254 (364)
.++|.+|++ |+|..+.|++|.|.|+.+
T Consensus 146 ~~~A~~A~~~l~g~~~~g~~i~v~~a~~ 173 (175)
T 1fje_B 146 EADAEKNLEEKQGAEIDGRSVSLYYTGE 173 (175)
T ss_dssp HHHHHHHHHHHTEEEETTEEEEEEECSS
T ss_pred HHHHHHHHHHhCCCEECCeEEEEEecCC
Confidence 999999998 999999999999999853
No 32
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.93 E-value=2.9e-26 Score=201.60 Aligned_cols=151 Identities=15% Similarity=0.188 Sum_probs=124.5
Q ss_pred hhcccCCccccccHHHHHHHHhccC-----------CcceEEecCCCCCCcccccCCCCCCCCCeEEeeecccCCCCCcc
Q 017897 75 MERKMGESFKDCEMRDLVDMLSKLN-----------PMAAEFVPPSLANGQIFNFNPAFFGPNGFGYTNNFIMHTDGTAN 143 (364)
Q Consensus 75 ~~~~~g~~~~~~~~~~L~~~Fs~~G-----------~i~~v~v~~d~~t~~s~~~~~~~~~~~GfaFV~f~~~~~~~~~~ 143 (364)
+..++|+|+|++++++|+++|++|| +|.++.+ +++ + |||||.|.+ .+
T Consensus 5 ~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~------~~~-~---------g~afV~F~~-~~----- 62 (198)
T 2yh0_A 5 RRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI------NQD-K---------NFAFLEFRS-VD----- 62 (198)
T ss_dssp CEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE------ETT-T---------TEEEEEESC-SH-----
T ss_pred eEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe------cCC-C---------CEEEEEeCC-HH-----
Confidence 4678899999999999999999995 4555554 334 5 999999999 66
Q ss_pred ccccchhhhhhcCCC--CCccccccCCccccc----------------------CCCCCcEEEEeCCCCCCcHHHHHHHh
Q 017897 144 TNGHTTTRRKRNGYS--QGKRRMNCRTSNAQQ----------------------DEVIRRTVYVSDIDQQVTEEQLATLF 199 (364)
Q Consensus 144 ~~a~~~~a~~~~~~~--~g~~~~~~~~~~~~~----------------------~~~~~~~lfV~nLp~~~te~~L~~~F 199 (364)
+|.. |+ .++.. .|++ +++.++.. .....++|||+|||.++++++|+++|
T Consensus 63 -~A~~--Al-~l~g~~~~g~~---i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f 135 (198)
T 2yh0_A 63 -ETTQ--AM-AFDGIIFQGQS---LKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELL 135 (198)
T ss_dssp -HHHH--HG-GGTTEEETTEE---EEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHH
T ss_pred -HHHH--HH-HhcCCEEcCce---EEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHH
Confidence 6888 88 56665 6666 22222211 12345899999999999999999999
Q ss_pred hcCCCeeEEEEecCC--CCCceEEEEEeCCHHHHHHHHH-ccccccCCeeEEEeeCCC
Q 017897 200 LTCGQVVDCRICGDP--NSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSKT 254 (364)
Q Consensus 200 ~~~G~i~~~~i~~d~--~~~rG~aFV~F~~~~~A~~al~-l~g~~l~g~~i~V~~a~~ 254 (364)
++||.|.+++++.++ +.++|||||+|.+.++|.+|++ |+|..+.|++|.|.++.+
T Consensus 136 ~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 193 (198)
T 2yh0_A 136 TSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASV 193 (198)
T ss_dssp HTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEESCC
T ss_pred HHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 999999999999986 3469999999999999999998 999999999999999864
No 33
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.92 E-value=3.5e-25 Score=205.94 Aligned_cols=151 Identities=16% Similarity=0.178 Sum_probs=127.1
Q ss_pred hhcccCCccccccHHHHH----HHHhccCCcceEEecCCCCCCcccccCCCCCCCCCeEEeeecccCCCCCccccccchh
Q 017897 75 MERKMGESFKDCEMRDLV----DMLSKLNPMAAEFVPPSLANGQIFNFNPAFFGPNGFGYTNNFIMHTDGTANTNGHTTT 150 (364)
Q Consensus 75 ~~~~~g~~~~~~~~~~L~----~~Fs~~G~i~~v~v~~d~~t~~s~~~~~~~~~~~GfaFV~f~~~~~~~~~~~~a~~~~ 150 (364)
...++|+|+|++++++|+ ++|++||+|.+|++++ ++++ + |||||.|.+ .+ +|..
T Consensus 10 ~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~-~---------g~afV~f~~-~~------~a~~-- 67 (282)
T 3pgw_A 10 HTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKM-R---------GQAFVIFKE-VS------SATN-- 67 (282)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCc-c---------eEEEEEECC-HH------HHHH--
Confidence 467789999999999966 9999999999999987 5666 6 999999999 66 6888
Q ss_pred hhhhcCCC--CCccccccCCccccc-------------------------------------------------------
Q 017897 151 RRKRNGYS--QGKRRMNCRTSNAQQ------------------------------------------------------- 173 (364)
Q Consensus 151 a~~~~~~~--~g~~~~~~~~~~~~~------------------------------------------------------- 173 (364)
|++.+++. .|+. +++.++..
T Consensus 68 A~~~l~g~~~~g~~---l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (282)
T 3pgw_A 68 ALRSMQGFPFYDKP---MRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGM 144 (282)
T ss_pred HHHHhcCCeeCCcE---EEEEEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCC
Confidence 89888776 5655 22211111
Q ss_pred ----------------------------------------------------------CCCCCcEEEEeCCCCCCcHHHH
Q 017897 174 ----------------------------------------------------------DEVIRRTVYVSDIDQQVTEEQL 195 (364)
Q Consensus 174 ----------------------------------------------------------~~~~~~~lfV~nLp~~~te~~L 195 (364)
.....++|||+|||.++++++|
T Consensus 145 ~~~~~~~~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l 224 (282)
T 3pgw_A 145 PPMTQAPRIMHHMPGQPPYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELML 224 (282)
T ss_pred CcccccccccccCCCCCCCCCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHH
Confidence 1113467999999999999999
Q ss_pred HHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-ccccccC-CeeEEEeeCC
Q 017897 196 ATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLG-FYPVRVLPSK 253 (364)
Q Consensus 196 ~~~F~~~G~i~~~~i~~d~~~~rG~aFV~F~~~~~A~~al~-l~g~~l~-g~~i~V~~a~ 253 (364)
+++|++||.|.+++++.++ +|||||+|.+.++|.+|++ |+|..+. |++|+|.|++
T Consensus 225 ~~~F~~~G~i~~v~~~~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 225 SMLFNQFPGFKEVRLVPGR---HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred HHHHHhcCCeEEEEEecCC---CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 9999999999999999765 4899999999999999998 9999999 9999999975
No 34
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.92 E-value=4.8e-25 Score=194.29 Aligned_cols=149 Identities=18% Similarity=0.112 Sum_probs=125.8
Q ss_pred hcccCCccc-cccHHHHHHHHhccCCcceEEecCCCCCCcccccCCCCCCCCCeEEeeecccCCCCCccccccchhhhhh
Q 017897 76 ERKMGESFK-DCEMRDLVDMLSKLNPMAAEFVPPSLANGQIFNFNPAFFGPNGFGYTNNFIMHTDGTANTNGHTTTRRKR 154 (364)
Q Consensus 76 ~~~~g~~~~-~~~~~~L~~~Fs~~G~i~~v~v~~d~~t~~s~~~~~~~~~~~GfaFV~f~~~~~~~~~~~~a~~~~a~~~ 154 (364)
..++|+|++ ++++++|+++|++||+|.+|++++++ . |||||.|.+ .+ +|.. |++.
T Consensus 5 ~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~----~-----------g~afV~f~~-~~------~a~~--A~~~ 60 (198)
T 1qm9_A 5 VLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK----K-----------ENALVQMAD-GN------QAQL--AMSH 60 (198)
T ss_dssp EEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC----S-----------SCCEEECTT-TH------HHHH--HHHH
T ss_pred EEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC----C-----------CEEEEEECC-HH------HHHH--HHHH
Confidence 567899999 99999999999999999999999985 3 999999999 66 6888 8987
Q ss_pred cCCC--CCccccccCCcccccC-------------------------------------CCCCcEEEEeCCCCCCcHHHH
Q 017897 155 NGYS--QGKRRMNCRTSNAQQD-------------------------------------EVIRRTVYVSDIDQQVTEEQL 195 (364)
Q Consensus 155 ~~~~--~g~~~~~~~~~~~~~~-------------------------------------~~~~~~lfV~nLp~~~te~~L 195 (364)
+++. .|++ +++.++... ....++|||+|||..+++++|
T Consensus 61 l~~~~~~g~~---l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l 137 (198)
T 1qm9_A 61 LNGHKLHGKP---IRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDL 137 (198)
T ss_dssp HTTCCCSSCC---CEEEECCCCSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHH
T ss_pred hCCCeecCeE---EEEEEecCCCcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHH
Confidence 7765 5655 222211100 122678999999999999999
Q ss_pred HHHhhcCC-CeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-ccccccC-CeeEEEeeCCC
Q 017897 196 ATLFLTCG-QVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLG-FYPVRVLPSKT 254 (364)
Q Consensus 196 ~~~F~~~G-~i~~~~i~~d~~~~rG~aFV~F~~~~~A~~al~-l~g~~l~-g~~i~V~~a~~ 254 (364)
+++|+.|| .|.+++++.+. +|||||+|.+.++|.+|++ |+|..+. |++|.|.|+++
T Consensus 138 ~~~f~~~G~~v~~v~i~~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~ 196 (198)
T 1qm9_A 138 KVLFSSNGGVVKGFKFFQKD---RKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKS 196 (198)
T ss_dssp HHHHHHTTSCCCEEEESSTT---SSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECC
T ss_pred HHHHHHcCCCceEEEEEeCC---CcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeecc
Confidence 99999999 99999997643 6899999999999999998 9999999 99999999864
No 35
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.92 E-value=1.4e-24 Score=196.21 Aligned_cols=150 Identities=18% Similarity=0.103 Sum_probs=126.4
Q ss_pred hhcccCCccc-cccHHHHHHHHhccCCcceEEecCCCCCCcccccCCCCCCCCCeEEeeecccCCCCCccccccchhhhh
Q 017897 75 MERKMGESFK-DCEMRDLVDMLSKLNPMAAEFVPPSLANGQIFNFNPAFFGPNGFGYTNNFIMHTDGTANTNGHTTTRRK 153 (364)
Q Consensus 75 ~~~~~g~~~~-~~~~~~L~~~Fs~~G~i~~v~v~~d~~t~~s~~~~~~~~~~~GfaFV~f~~~~~~~~~~~~a~~~~a~~ 153 (364)
...++|+|++ ++++++|+++|++||+|.+|+|++++ . |||||.|.+ .+ +|.. |++
T Consensus 35 ~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~----~-----------g~afV~F~~-~~------~A~~--Ai~ 90 (229)
T 2adc_A 35 SVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK----K-----------ENALVQMAD-GN------QAQL--AMS 90 (229)
T ss_dssp SEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT----S-----------CCEEEEESC-HH------HHHH--HHH
T ss_pred CEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC----C-----------CEEEEEECC-HH------HHHH--HHH
Confidence 4677899999 99999999999999999999999985 3 999999999 66 6888 898
Q ss_pred hcCCC--CCccccccCCcccccC-------------------------------------CCCCcEEEEeCCCCCCcHHH
Q 017897 154 RNGYS--QGKRRMNCRTSNAQQD-------------------------------------EVIRRTVYVSDIDQQVTEEQ 194 (364)
Q Consensus 154 ~~~~~--~g~~~~~~~~~~~~~~-------------------------------------~~~~~~lfV~nLp~~~te~~ 194 (364)
.++.. .|++ +++.++... ....++|||+|||.++++++
T Consensus 91 ~l~g~~~~g~~---l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~ 167 (229)
T 2adc_A 91 HLNGHKLHGKP---IRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEED 167 (229)
T ss_dssp HHTTCBCSSSB---CEEECCSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHH
T ss_pred HhCCCeECCeE---EEEEEecCccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHH
Confidence 77665 5655 222211100 11257899999999999999
Q ss_pred HHHHhhcCC-CeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-ccccccC-CeeEEEeeCCC
Q 017897 195 LATLFLTCG-QVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLG-FYPVRVLPSKT 254 (364)
Q Consensus 195 L~~~F~~~G-~i~~~~i~~d~~~~rG~aFV~F~~~~~A~~al~-l~g~~l~-g~~i~V~~a~~ 254 (364)
|+++|++|| .|.+++++.+ ++|||||+|.+.++|.+|++ |+|..+. |++|.|.|+++
T Consensus 168 l~~~f~~~G~~i~~v~i~~~---~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~ 227 (229)
T 2adc_A 168 LKVLFSSNGGVVKGFKFFQK---DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKS 227 (229)
T ss_dssp HHHHHHTTSCCEEEEEECSS---STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSS
T ss_pred HHHHHHHcCCCeeEEEEEEC---CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecC
Confidence 999999999 9999999763 36899999999999999998 9999999 99999999864
No 36
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.91 E-value=3.4e-24 Score=197.49 Aligned_cols=148 Identities=22% Similarity=0.254 Sum_probs=127.0
Q ss_pred hhcccCCccccccHHHHHHHHhccCCcceEEecCCCCCCcccccCCCCCCCCCeEEeeecccCCCCCccccccchhhhhh
Q 017897 75 MERKMGESFKDCEMRDLVDMLSKLNPMAAEFVPPSLANGQIFNFNPAFFGPNGFGYTNNFIMHTDGTANTNGHTTTRRKR 154 (364)
Q Consensus 75 ~~~~~g~~~~~~~~~~L~~~Fs~~G~i~~v~v~~d~~t~~s~~~~~~~~~~~GfaFV~f~~~~~~~~~~~~a~~~~a~~~ 154 (364)
...++|+|++++|+++|+++|++||+|.+|+++++ + |||||.|.+ .. +|.. |+..
T Consensus 23 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-------k---------g~afV~f~~-~~------~A~~--A~~~ 77 (261)
T 3sde_A 23 CRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD-------R---------GFGFIRLES-RT------LAEI--AKAE 77 (261)
T ss_dssp GEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT-------T---------TEEEEECSS-HH------HHHH--HHHH
T ss_pred CEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC-------C---------cEEEEEECC-HH------HHHH--HHHH
Confidence 35678999999999999999999999999999653 5 999999999 66 6888 8987
Q ss_pred cCCC--CCccccccCCcccccCCCCCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCC-CCCceEEEEEeCCHHHH
Q 017897 155 NGYS--QGKRRMNCRTSNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP-NSVLRFAFVEFTDEEGA 231 (364)
Q Consensus 155 ~~~~--~g~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~-~~~rG~aFV~F~~~~~A 231 (364)
+++. .|++ +++.++. ..++|||+|||..+|+++|+++|+.||.|.+|+++.|. +.++|||||+|.+.++|
T Consensus 78 l~g~~i~g~~---l~v~~a~----~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A 150 (261)
T 3sde_A 78 LDGTILKSRP---LRIRFAT----HGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPA 150 (261)
T ss_dssp HTTCEETTEE---CEEEECC----CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHH
T ss_pred cCCcEECCce---eEeeecc----cCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHH
Confidence 7776 6766 4444443 36799999999999999999999999999999999985 34699999999999999
Q ss_pred HHHHH-c-cccccC---CeeEEEeeCCC
Q 017897 232 RAALS-L-AGTMLG---FYPVRVLPSKT 254 (364)
Q Consensus 232 ~~al~-l-~g~~l~---g~~i~V~~a~~ 254 (364)
.+|++ + ++..+. +++|.|.++..
T Consensus 151 ~~A~~~l~~~~~~~~~~~r~i~v~~~~~ 178 (261)
T 3sde_A 151 RKALERCGDGAFLLTTTPRPVIVEPMEQ 178 (261)
T ss_dssp HHHHHHHHHSCEESSSSCCBCEEEECCC
T ss_pred HHHHHHhcCCeEEecCCCceEEEeeccc
Confidence 99998 8 444444 89999999864
No 37
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.90 E-value=2.1e-23 Score=177.54 Aligned_cols=146 Identities=16% Similarity=0.120 Sum_probs=112.0
Q ss_pred EEEEecCCCCCceEEEEEeCCHHHHHHHHH-ccccccCCeeEEEeeCCCCCCCCCCCCCCCCccccccCceEEEEeCCCC
Q 017897 207 DCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDK 285 (364)
Q Consensus 207 ~~~i~~d~~~~rG~aFV~F~~~~~A~~al~-l~g~~l~g~~i~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~ 285 (364)
+++|+.+..+++|||||+|.+.++|++|++ +++.......+.+............ .............++|||+|||.
T Consensus 2 ~~kl~ln~~~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~v~nl~~ 80 (158)
T 2kn4_A 2 QYKLILNGKTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEG-SHHHHHHMDVEGMTSLKVDNLTY 80 (158)
T ss_dssp EEEEEEECSSCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECC-CCCSSCCCCCCBCCEEEEESCCT
T ss_pred cEEEEecCccccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCcccccccccc-ccccccccCCCCCCEEEEeCCCC
Confidence 577888888899999999999999999997 7664433333333221110000000 00011111234568999999999
Q ss_pred CCCHHHHHHHhhhcCCceeEEEEeccC--CCCeeEEEEEecCHHHHHHHHh-cCCCeeCCeeeEEeecCCCC
Q 017897 286 KVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSPSKTPV 354 (364)
Q Consensus 286 ~~tee~L~~~F~~~~G~I~~v~i~~d~--~~~kg~afV~F~~~e~A~~Al~-lng~~~~g~~l~V~~ak~~~ 354 (364)
.+++++|+++|++| |.|.+|.|+++. +.++|||||+|.+.++|.+|+. |||..++|++|+|.|++++.
T Consensus 81 ~~~~~~l~~~F~~~-G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 151 (158)
T 2kn4_A 81 RTSPDTLRRVFEKY-GRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGR 151 (158)
T ss_dssp TCCHHHHHHHHHHH-SCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECCSS
T ss_pred CCCHHHHHHHHHhc-CCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCC
Confidence 99999999999997 999999999984 7899999999999999999999 99999999999999999863
No 38
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.88 E-value=7.8e-23 Score=165.06 Aligned_cols=109 Identities=20% Similarity=0.342 Sum_probs=74.4
Q ss_pred CCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-ccccccCCeeEEEeeCCCC
Q 017897 177 IRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSKTA 255 (364)
Q Consensus 177 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~~~~rG~aFV~F~~~~~A~~al~-l~g~~l~g~~i~V~~a~~~ 255 (364)
...+|||+|||+++++++|+++|++||.|.+|+|+.|+++++|||||+|.+.++|++||+ |++..|.|++|.|.++...
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~ 83 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 83 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCC
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCc
Confidence 457899999999999999999999999999999999988889999999999999999997 9999999999999998642
Q ss_pred CCCCCCCCCCCCccccccCceEEEEeCCCCCCCHHH
Q 017897 256 IAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGD 291 (364)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~tee~ 291 (364)
.... ...........+|||+|||+.+|++.
T Consensus 84 ~~~~------~~~~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 84 KERE------AELGARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp CC----------------------------------
T ss_pred cccc------cccccccCCCCceEeCCCCCCccccc
Confidence 1110 11111233446899999999999863
No 39
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.87 E-value=1.5e-21 Score=164.72 Aligned_cols=141 Identities=13% Similarity=0.133 Sum_probs=114.6
Q ss_pred EEecCCCCCceEEEEEeCCHHHHHHHHH-c-cccccCCeeEEEeeCCCCCCCCC--CCCCCCCccccccCceEEEEeCCC
Q 017897 209 RICGDPNSVLRFAFVEFTDEEGARAALS-L-AGTMLGFYPVRVLPSKTAIAPVN--PTFLPRSEDEREMCSRTIYCTNID 284 (364)
Q Consensus 209 ~i~~d~~~~rG~aFV~F~~~~~A~~al~-l-~g~~l~g~~i~V~~a~~~~~~~~--~~~~~~~~~~~~~~~~~l~V~nLp 284 (364)
.+..+..+-+|+++|+|.+.++|++|++ + +|..+.| +|.+.++........ ...............++|||+|||
T Consensus 4 al~l~g~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~ 82 (150)
T 2i2y_A 4 KLILNGKTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLG 82 (150)
T ss_dssp EEEECCSSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCC
T ss_pred EeeeccccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccccccccccccccccCCCCCCEEEEeCCC
Confidence 4445545568999999999999999997 8 9999999 999998754211000 000111122234567899999999
Q ss_pred CCCCHHHHHHHhhhcCCceeEEEEeccCCCCeeEEEEEecCHHHHHHHHh-cCCCeeCCeeeEEeecCCCC
Q 017897 285 KKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSPSKTPV 354 (364)
Q Consensus 285 ~~~tee~L~~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~e~A~~Al~-lng~~~~g~~l~V~~ak~~~ 354 (364)
+.+++++|+++|++| |.|.+|.++++ ++|||||+|.+.++|.+|+. |||..++|++|+|.|++++.
T Consensus 83 ~~~t~~~l~~~F~~~-G~i~~v~i~~~---~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 149 (150)
T 2i2y_A 83 NNGNKTELERAFGYY-GPLRSVWVARN---PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGEK 149 (150)
T ss_dssp SCCSCHHHHHHHHHH-SCEEEEEECSS---SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCCC
T ss_pred CCCCHHHHHHHHHhh-CCEEEEEEeeC---CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCCC
Confidence 999999999999997 99999999987 67899999999999999999 99999999999999998763
No 40
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.83 E-value=7.2e-21 Score=161.83 Aligned_cols=132 Identities=19% Similarity=0.204 Sum_probs=101.3
Q ss_pred eEEecCCCCCCcccccCCCCCCCCCeEEeeecccCCCCCccccccchhhhhhcCCC---CCccccccC-----------C
Q 017897 103 AEFVPPSLANGQIFNFNPAFFGPNGFGYTNNFIMHTDGTANTNGHTTTRRKRNGYS---QGKRRMNCR-----------T 168 (364)
Q Consensus 103 ~v~v~~d~~t~~s~~~~~~~~~~~GfaFV~f~~~~~~~~~~~~a~~~~a~~~~~~~---~g~~~~~~~-----------~ 168 (364)
+++|+++.. ++ + |||||.|.+ .+ +|++ |++.++.. .|...+..+ .
T Consensus 2 ~~kl~ln~~--~~-~---------G~~fV~f~~-~~------~A~~--al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 60 (158)
T 2kn4_A 2 QYKLILNGK--TL-K---------GETTTEAVD-AA------TAEK--VFKQYANDNGVDGEWTYDDATKTFTVTEGSHH 60 (158)
T ss_dssp EEEEEEECS--SC-E---------EEEEEECSS-HH------HHHH--HHHHHHHHHTCCCEEEEETTTTEEEEECCCCC
T ss_pred cEEEEecCc--cc-c---------chhHHHHHH-HH------hHHH--HHHhhcccCCCCCcccccCccccccccccccc
Confidence 456666655 34 5 999999999 56 5777 77665422 121111000 0
Q ss_pred cccccCCCCCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCC--CCCceEEEEEeCCHHHHHHHHH-ccccccCCe
Q 017897 169 SNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP--NSVLRFAFVEFTDEEGARAALS-LAGTMLGFY 245 (364)
Q Consensus 169 ~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~--~~~rG~aFV~F~~~~~A~~al~-l~g~~l~g~ 245 (364)
..........++|||+|||+++++++|+++|+.||.|.+|+++.|+ +.++|||||+|.+.++|.+|++ |+|..+.|+
T Consensus 61 ~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 140 (158)
T 2kn4_A 61 HHHHMDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGR 140 (158)
T ss_dssp SSCCCCCCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSS
T ss_pred cccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCe
Confidence 1112223446899999999999999999999999999999999986 4579999999999999999998 999999999
Q ss_pred eEEEeeCCCC
Q 017897 246 PVRVLPSKTA 255 (364)
Q Consensus 246 ~i~V~~a~~~ 255 (364)
+|.|.+++..
T Consensus 141 ~l~v~~a~~~ 150 (158)
T 2kn4_A 141 ELRVQMARYG 150 (158)
T ss_dssp EEEEEEECCS
T ss_pred EEEEEECCCC
Confidence 9999998753
No 41
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.80 E-value=2.2e-19 Score=140.78 Aligned_cols=78 Identities=29% Similarity=0.464 Sum_probs=73.8
Q ss_pred CceEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccC--CCCeeEEEEEecCHHHHHHHHh-cCCCeeCCeeeEEeec
Q 017897 274 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSPS 350 (364)
Q Consensus 274 ~~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~--~~~kg~afV~F~~~e~A~~Al~-lng~~~~g~~l~V~~a 350 (364)
.+++|||+|||..+++++|+++|++| |.|.+|++++++ +.++|||||+|.+.++|.+|+. |||..++|++|+|.||
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~-G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~A 96 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSI-GEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYA 96 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTT-SCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhc-CCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 35789999999999999999999997 999999999875 7899999999999999999999 9999999999999999
Q ss_pred CC
Q 017897 351 KT 352 (364)
Q Consensus 351 k~ 352 (364)
+|
T Consensus 97 kP 98 (99)
T 4fxv_A 97 RP 98 (99)
T ss_dssp CB
T ss_pred eC
Confidence 76
No 42
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.80 E-value=2.6e-19 Score=140.45 Aligned_cols=78 Identities=23% Similarity=0.398 Sum_probs=73.0
Q ss_pred CCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEeCCHHHHHHHHH-ccccccCCeeEEEeeCC
Q 017897 177 IRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSK 253 (364)
Q Consensus 177 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~~--~~rG~aFV~F~~~~~A~~al~-l~g~~l~g~~i~V~~a~ 253 (364)
..++|||+|||+++|+++|+++|++||.|.++++++|+. .++|||||+|.++++|.+|++ |||..+.|++|+|.|++
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~Ak 97 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR 97 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence 357899999999999999999999999999999999874 469999999999999999998 99999999999999986
Q ss_pred C
Q 017897 254 T 254 (364)
Q Consensus 254 ~ 254 (364)
+
T Consensus 98 P 98 (99)
T 4fxv_A 98 P 98 (99)
T ss_dssp B
T ss_pred C
Confidence 4
No 43
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.77 E-value=1.6e-18 Score=139.63 Aligned_cols=80 Identities=24% Similarity=0.337 Sum_probs=75.0
Q ss_pred CceEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccCCCCeeEEEEEecCHHHHHHHHh-cCCCeeCCeeeEEeecCC
Q 017897 274 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSPSKT 352 (364)
Q Consensus 274 ~~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~e~A~~Al~-lng~~~~g~~l~V~~ak~ 352 (364)
...+|||+|||+.+++++|+++|++| |.|.+|+|+++.+.++|||||+|.+.++|.+||. |||..|+|+.|+|.++++
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~-G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~ 82 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAF-GNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 82 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGG-SCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSC
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhcc-CCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 34689999999999999999999997 9999999999988899999999999999999999 999999999999999987
Q ss_pred CC
Q 017897 353 PV 354 (364)
Q Consensus 353 ~~ 354 (364)
+.
T Consensus 83 ~~ 84 (115)
T 4f25_A 83 RK 84 (115)
T ss_dssp CC
T ss_pred cc
Confidence 54
No 44
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.76 E-value=1.4e-18 Score=146.56 Aligned_cols=115 Identities=23% Similarity=0.245 Sum_probs=93.1
Q ss_pred CeEEeeecccCCCCCccccccchhhhhhc-CCC--CCcc-ccccCCc--------------ccccCCCCCcEEEEeCCCC
Q 017897 127 GFGYTNNFIMHTDGTANTNGHTTTRRKRN-GYS--QGKR-RMNCRTS--------------NAQQDEVIRRTVYVSDIDQ 188 (364)
Q Consensus 127 GfaFV~f~~~~~~~~~~~~a~~~~a~~~~-~~~--~g~~-~~~~~~~--------------~~~~~~~~~~~lfV~nLp~ 188 (364)
|+++|.|.+ .+ +|++ |++.+ |.. .| + .+..... .........++|||+|||+
T Consensus 14 G~~~ve~~~-~~------~A~~--a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~ 83 (150)
T 2i2y_A 14 GETTTEAVD-AA------TAEK--VFKQYANDNGVDG-EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGN 83 (150)
T ss_dssp EEEEEECSS-HH------HHTT--THHHHHHHHTCCC-EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCCS
T ss_pred ccceeeecC-HH------HHHH--HHHHHhcCCCCCC-ceecccccCccccccccccccccccccCCCCCCEEEEeCCCC
Confidence 999999999 55 5888 88776 444 45 3 1111110 1122334568999999999
Q ss_pred CCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-ccccccCCeeEEEeeCCC
Q 017897 189 QVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSKT 254 (364)
Q Consensus 189 ~~te~~L~~~F~~~G~i~~~~i~~d~~~~rG~aFV~F~~~~~A~~al~-l~g~~l~g~~i~V~~a~~ 254 (364)
++++++|+++|++||.|.+|+++.+ ++|||||+|.+.++|.+|++ |+|..+.|++|.|.++.+
T Consensus 84 ~~t~~~l~~~F~~~G~i~~v~i~~~---~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 147 (150)
T 2i2y_A 84 NGNKTELERAFGYYGPLRSVWVARN---PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNG 147 (150)
T ss_dssp CCSCHHHHHHHHHHSCEEEEEECSS---SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCC
T ss_pred CCCHHHHHHHHHhhCCEEEEEEeeC---CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCC
Confidence 9999999999999999999999987 57999999999999999998 999999999999999854
No 45
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.75 E-value=2e-18 Score=135.45 Aligned_cols=99 Identities=23% Similarity=0.278 Sum_probs=81.9
Q ss_pred cEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-ccccccCCeeEEEeeCCCCCC
Q 017897 179 RTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSKTAIA 257 (364)
Q Consensus 179 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~~~~rG~aFV~F~~~~~A~~al~-l~g~~l~g~~i~V~~a~~~~~ 257 (364)
++|||+|||+++++++|+++|++||.|.+++++.+ ++|||||+|.+.++|.+|++ |++..+.|++|.|.+++....
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~---~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~ 77 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN---PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPR 77 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS---SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCCC
Confidence 47999999999999999999999999999999988 67999999999999999998 999999999999999875432
Q ss_pred CCCCCCCCCCccccccCceEEEEeCCC
Q 017897 258 PVNPTFLPRSEDEREMCSRTIYCTNID 284 (364)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~l~V~nLp 284 (364)
..... ..........+|||+||+
T Consensus 78 ~~~~~----~~~~~~~~~~~ifvg~L~ 100 (101)
T 2hvz_A 78 RSRFD----RPPARRKLLEVLFNGPLE 100 (101)
T ss_dssp SSCCC----SCCCSCCCCSCCCSCCCC
T ss_pred cccCC----CCCccccCCCceecCCCC
Confidence 21111 111112345789999997
No 46
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.75 E-value=1.4e-18 Score=134.12 Aligned_cols=79 Identities=19% Similarity=0.259 Sum_probs=72.5
Q ss_pred eEEEEeCCCCCCCHHHHHHHhhhcCC-ceeEEEEeccC--CCCeeEEEEEecCHHHHHHHHh-c-CCCeeCCeeeEEeec
Q 017897 276 RTIYCTNIDKKVTQGDIKLFFESVCG-EVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-C-SGAVLGSLPIRVSPS 350 (364)
Q Consensus 276 ~~l~V~nLp~~~tee~L~~~F~~~~G-~I~~v~i~~d~--~~~kg~afV~F~~~e~A~~Al~-l-ng~~~~g~~l~V~~a 350 (364)
++|||+|||+.+++++|+++|++| | .|.+|+|++++ +.++|||||+|.+.++|.+||+ + ++..++|++|+|.|+
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~-G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSH-GVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHH-TCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHh-CCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 689999999999999999999997 9 89999999885 6899999999999999999998 6 567899999999999
Q ss_pred CCCCC
Q 017897 351 KTPVR 355 (364)
Q Consensus 351 k~~~~ 355 (364)
+++..
T Consensus 81 ~~~~~ 85 (91)
T 2lxi_A 81 DPKPK 85 (91)
T ss_dssp CSCCC
T ss_pred CCCCC
Confidence 87643
No 47
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.75 E-value=1.6e-18 Score=143.73 Aligned_cols=122 Identities=18% Similarity=0.202 Sum_probs=78.8
Q ss_pred EEEEEeCCHHHHHHHHH-ccccccCCeeEEEeeCCCCCCCCCCCCCCCCccccccCceEEEEeCCCCCCCHHHHHHHhhh
Q 017897 220 FAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFES 298 (364)
Q Consensus 220 ~aFV~F~~~~~A~~al~-l~g~~l~g~~i~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~ 298 (364)
++|++|++...+..|++ +++....|+. .+.+.. .+ ......++|||+|||..+++++|+++|++
T Consensus 6 ~~~~~~~~~~~~~~a~~~~~g~~~~g~~-~~~~~~----------~~----~~~~~~~~l~V~nLp~~~te~~L~~~F~~ 70 (135)
T 2lea_A 6 HHHHHSSGLVPRGSHMASMTGGQQMGRG-SMSYGR----------PP----PDVEGMTSLKVDNLTYRTSPDTLRRVFEK 70 (135)
T ss_dssp ------------------------------CCSCC----------SC----SSGGGCCCEEEECCCSSCHHHHHHHHHGG
T ss_pred cccccccCCCchhhhhhhccCCCCCCCC-CCCcCC----------CC----CCCCCCCEEEEeCCCCCCCHHHHHHHHHh
Confidence 67888888889999998 8776655543 111211 11 11334689999999999999999999999
Q ss_pred cCCceeEEEEeccC--CCCeeEEEEEecCHHHHHHHHh-cCCCeeCCeeeEEeecCCCCCCC
Q 017897 299 VCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSPSKTPVRPR 357 (364)
Q Consensus 299 ~~G~I~~v~i~~d~--~~~kg~afV~F~~~e~A~~Al~-lng~~~~g~~l~V~~ak~~~~~~ 357 (364)
| |.|..|.|+++. +.++|||||+|.+.++|.+|+. |||..|.|+.|+|.|+++...++
T Consensus 71 ~-G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~~~~~ 131 (135)
T 2lea_A 71 Y-GRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPD 131 (135)
T ss_dssp G-SCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCCCCCCT
T ss_pred c-CCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCCCc
Confidence 7 999999999874 6899999999999999999999 99999999999999999875444
No 48
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.75 E-value=5.2e-18 Score=145.40 Aligned_cols=135 Identities=19% Similarity=0.160 Sum_probs=76.5
Q ss_pred EEeCCHHHHHHHHH-ccccccC--CeeEEEeeCCCCCCCCCCCC---C---CCCccccccCceEEEEeCCCCCCCHHHHH
Q 017897 223 VEFTDEEGARAALS-LAGTMLG--FYPVRVLPSKTAIAPVNPTF---L---PRSEDEREMCSRTIYCTNIDKKVTQGDIK 293 (364)
Q Consensus 223 V~F~~~~~A~~al~-l~g~~l~--g~~i~V~~a~~~~~~~~~~~---~---~~~~~~~~~~~~~l~V~nLp~~~tee~L~ 293 (364)
.+|++.++|+.|+. +++.... |+.+.+.++.......-... . ...........++|||+|||..+++++|+
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~ 90 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIHSYERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQEDEIQ 90 (165)
T ss_dssp -------------------------------------------------------CCCCC-CEEEEEESCCTTCCHHHHH
T ss_pred hhhhccccccccchhhccccccccCCCCCCCccccccccCccccccCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHH
Confidence 68999999999997 8876654 66666665322110000000 0 00111123456899999999999999999
Q ss_pred HHhhhcCCceeEEEEeccC--CCCeeEEEEEecCHHHHHHHHh-cCCCeeCCeeeEEeecCCCCCCCC
Q 017897 294 LFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSPSKTPVRPRA 358 (364)
Q Consensus 294 ~~F~~~~G~I~~v~i~~d~--~~~kg~afV~F~~~e~A~~Al~-lng~~~~g~~l~V~~ak~~~~~~~ 358 (364)
.+|++| |.|..|.|+++. +.++|||||+|.+.++|.+||. |||..|.|+.|.|.|+++...++.
T Consensus 91 ~~F~~~-G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~~~ 157 (165)
T 1rk8_A 91 EKFCDY-GEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKGPKRV 157 (165)
T ss_dssp HHHGGG-SCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEECC----
T ss_pred HHhhcC-CCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCCCCCCC
Confidence 999997 999999999874 6789999999999999999999 999999999999999987655443
No 49
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1.2e-17 Score=131.49 Aligned_cols=80 Identities=30% Similarity=0.421 Sum_probs=75.8
Q ss_pred CCCCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-ccccccCCeeEEEeeCC
Q 017897 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSK 253 (364)
Q Consensus 175 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~~~~rG~aFV~F~~~~~A~~al~-l~g~~l~g~~i~V~~a~ 253 (364)
....++|||+|||+++++++|+++|++||.|.+|+|+.++.+++|||||+|.+.++|.+|++ |++..+.|++|.|.++.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 91 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWAT 91 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEECC
Confidence 44578999999999999999999999999999999999988889999999999999999998 99999999999999986
Q ss_pred C
Q 017897 254 T 254 (364)
Q Consensus 254 ~ 254 (364)
.
T Consensus 92 ~ 92 (103)
T 2cqi_A 92 T 92 (103)
T ss_dssp C
T ss_pred C
Confidence 5
No 50
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.75 E-value=1.1e-17 Score=133.77 Aligned_cols=80 Identities=14% Similarity=0.110 Sum_probs=74.8
Q ss_pred cCceEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccC--CCCeeEEEEEecCHHHHHHHHh-cCCCeeCCeeeEEee
Q 017897 273 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSP 349 (364)
Q Consensus 273 ~~~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~--~~~kg~afV~F~~~e~A~~Al~-lng~~~~g~~l~V~~ 349 (364)
.+.++|||+|||+.+++++|+++|++| |.|.+|.|++|. ++++|||||+|.+.++|.+|+. |||..+.|+.|+|.+
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~-G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~ 82 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKY-GEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQL 82 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTT-SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhc-CCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 356899999999999999999999997 999999999986 6899999999999999999999 999999999999999
Q ss_pred cCCC
Q 017897 350 SKTP 353 (364)
Q Consensus 350 ak~~ 353 (364)
+...
T Consensus 83 a~~~ 86 (110)
T 3s8s_A 83 DIKG 86 (110)
T ss_dssp CSTT
T ss_pred CCCC
Confidence 8654
No 51
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.74 E-value=7.2e-18 Score=134.74 Aligned_cols=77 Identities=22% Similarity=0.209 Sum_probs=73.0
Q ss_pred CCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEeCCHHHHHHHHH-ccccccCCeeEEEeeCC
Q 017897 177 IRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSK 253 (364)
Q Consensus 177 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~~--~~rG~aFV~F~~~~~A~~al~-l~g~~l~g~~i~V~~a~ 253 (364)
..++|||+|||+++++++|+++|++||.|.+|+|+.|+. .++|||||+|.+.++|.+|++ |||..+.|+.|.|.++.
T Consensus 5 p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a~ 84 (110)
T 3s8s_A 5 PLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLDI 84 (110)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 468999999999999999999999999999999999885 479999999999999999998 99999999999999975
No 52
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=1.3e-17 Score=130.29 Aligned_cols=88 Identities=23% Similarity=0.368 Sum_probs=79.9
Q ss_pred cCceEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccC--CCCeeEEEEEecCHHHHHHHHh-cCCCeeCCeeeEEee
Q 017897 273 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSP 349 (364)
Q Consensus 273 ~~~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~--~~~kg~afV~F~~~e~A~~Al~-lng~~~~g~~l~V~~ 349 (364)
...++|||+|||..+++++|+++|++| |.|..|.++++. +.++|||||+|.+.++|.+|+. |||..+.|+.|+|.|
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~-G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAY-GPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLP 84 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTT-SCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc-CCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 356899999999999999999999997 999999999885 6789999999999999999998 999999999999999
Q ss_pred cCCCCCCCCCCC
Q 017897 350 SKTPVRPRAPRP 361 (364)
Q Consensus 350 ak~~~~~~~~r~ 361 (364)
++++..+..+.+
T Consensus 85 a~~~~~~~~~~~ 96 (99)
T 1whw_A 85 STIKKEASQSGP 96 (99)
T ss_dssp CCCCSTTCCCCC
T ss_pred cCCCcccccCCC
Confidence 999866554443
No 53
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.74 E-value=3.3e-17 Score=131.60 Aligned_cols=88 Identities=22% Similarity=0.288 Sum_probs=79.8
Q ss_pred ccCceEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccC--CCCeeEEEEEecCHHHHHHHHh-cCCCeeCCeeeEEe
Q 017897 272 EMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVS 348 (364)
Q Consensus 272 ~~~~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~--~~~kg~afV~F~~~e~A~~Al~-lng~~~~g~~l~V~ 348 (364)
....++|||+|||..+++++|+++|++| |.|..|.|+++. +.++|||||+|.+.++|.+||. |||..|+|+.|+|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~-G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 90 (115)
T 2dgo_A 12 TSNHFHVFVGDLSPEITTEDIKAAFAPF-GRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTN 90 (115)
T ss_dssp STTCEEEEEESCCTTCCHHHHHHHHGGG-SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhc-CCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 3456899999999999999999999997 999999999884 7889999999999999999999 99999999999999
Q ss_pred ecCCCCCCCCCC
Q 017897 349 PSKTPVRPRAPR 360 (364)
Q Consensus 349 ~ak~~~~~~~~r 360 (364)
|++++..++.+.
T Consensus 91 ~a~~~~~~~~~~ 102 (115)
T 2dgo_A 91 WATRKPPAPKST 102 (115)
T ss_dssp ESSCCCCCSCCC
T ss_pred EccCCCCCCccc
Confidence 999876655443
No 54
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=2.5e-17 Score=129.71 Aligned_cols=85 Identities=25% Similarity=0.370 Sum_probs=78.6
Q ss_pred cCceEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccCCCCeeEEEEEecCHHHHHHHHh-cCCCeeCCeeeEEeecC
Q 017897 273 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSPSK 351 (364)
Q Consensus 273 ~~~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~e~A~~Al~-lng~~~~g~~l~V~~ak 351 (364)
...++|||+|||..+++++|+++|++| |.|.+|.|+++.+.++|||||+|.+.++|.+|+. ||+..|.|+.|+|.|++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~-G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 91 (103)
T 2cqi_A 13 GQPRTLYVGNLSRDVTEVLILQLFSQI-GPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWAT 91 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHHHH-SCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHhc-CCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEECC
Confidence 456899999999999999999999997 9999999999987789999999999999999999 99999999999999999
Q ss_pred CCCCCCC
Q 017897 352 TPVRPRA 358 (364)
Q Consensus 352 ~~~~~~~ 358 (364)
++..++.
T Consensus 92 ~~~~~~~ 98 (103)
T 2cqi_A 92 TPSSQKS 98 (103)
T ss_dssp CTTCCCC
T ss_pred CCccccc
Confidence 8755443
No 55
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.74 E-value=2.7e-18 Score=138.02 Aligned_cols=103 Identities=22% Similarity=0.337 Sum_probs=90.4
Q ss_pred CCCCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-ccccccCCeeEEEeeCC
Q 017897 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSK 253 (364)
Q Consensus 175 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~~~~rG~aFV~F~~~~~A~~al~-l~g~~l~g~~i~V~~a~ 253 (364)
+...++|||+|||.++++++|+++|+.||.|.++.++.+. .++|||||+|.+.++|.+|++ |+|..+.|+.|.|.++.
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 83 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTP-ETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYN 83 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECST-TTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCC-CCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEec
Confidence 3456899999999999999999999999999999999874 358999999999999999998 99999999999999985
Q ss_pred CCCCCCCCCCCCCCccccccCceEEEEeCCCCCCCHHHHHHHhhhcCC
Q 017897 254 TAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCG 301 (364)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~~~G 301 (364)
+.. . . ++++...++++|.++|++| |
T Consensus 84 ~~~--------------~----~----~~~~~~~~~~~l~~~~~~~-g 108 (115)
T 3lqv_A 84 ANR--------------A----F----QKMDTKKKEEQLKLLKEKY-G 108 (115)
T ss_dssp HHH--------------H----T----TTSCHHHHHHHHHHHHHHH-C
T ss_pred CCh--------------h----h----hhhhHhHhHHHHHHHHHHh-C
Confidence 210 0 0 5678888999999999997 7
No 56
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=2.4e-17 Score=129.73 Aligned_cols=82 Identities=22% Similarity=0.314 Sum_probs=76.4
Q ss_pred CCCCCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-ccccccCCeeEEEeeC
Q 017897 174 DEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPS 252 (364)
Q Consensus 174 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~~~~rG~aFV~F~~~~~A~~al~-l~g~~l~g~~i~V~~a 252 (364)
.....++|||+|||+++++++|+++|++||.|.+|+|+.++..++|||||+|.+.++|.+|++ |++..|.|++|.|.++
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 90 (103)
T 2cq3_A 11 SKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNA 90 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 344578999999999999999999999999999999999987789999999999999999998 9999999999999998
Q ss_pred CCC
Q 017897 253 KTA 255 (364)
Q Consensus 253 ~~~ 255 (364)
...
T Consensus 91 ~~~ 93 (103)
T 2cq3_A 91 TAR 93 (103)
T ss_dssp CSS
T ss_pred ccC
Confidence 653
No 57
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=5.1e-18 Score=133.98 Aligned_cols=81 Identities=19% Similarity=0.259 Sum_probs=74.5
Q ss_pred cCCCCCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCC-CCCceEEEEEeCCHHHHHHHHHccccccCCeeEEEee
Q 017897 173 QDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP-NSVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLP 251 (364)
Q Consensus 173 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~-~~~rG~aFV~F~~~~~A~~al~l~g~~l~g~~i~V~~ 251 (364)
+.....++|||+|||+++|+++|+++|++||.|.+|+|+.|+ +.++|||||+|.++++|.+||.++++.+.|++|.|.+
T Consensus 6 ~~~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~~~~~~~~gr~l~V~~ 85 (103)
T 1s79_A 6 KNDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILF 85 (103)
T ss_dssp SSCSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHTSSCCCCTTTTCEEEE
T ss_pred cccCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHHcCCCEECCEEEEEEE
Confidence 344557899999999999999999999999999999999987 4579999999999999999999999999999999998
Q ss_pred CC
Q 017897 252 SK 253 (364)
Q Consensus 252 a~ 253 (364)
+.
T Consensus 86 ~~ 87 (103)
T 1s79_A 86 KD 87 (103)
T ss_dssp HH
T ss_pred ch
Confidence 64
No 58
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.74 E-value=3.1e-18 Score=141.96 Aligned_cols=118 Identities=19% Similarity=0.202 Sum_probs=78.0
Q ss_pred CeEEeeecccCCCCCccccccchhhhhhcCCC--CCccccccCCcccccCCCCCcEEEEeCCCCCCcHHHHHHHhhcCCC
Q 017897 127 GFGYTNNFIMHTDGTANTNGHTTTRRKRNGYS--QGKRRMNCRTSNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQ 204 (364)
Q Consensus 127 GfaFV~f~~~~~~~~~~~~a~~~~a~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~ 204 (364)
-|.|..|.+.. .+.. |+..++.. .|+.. .....+.......++|||+|||+++++++|+++|+.||.
T Consensus 5 ~~~~~~~~~~~-------~~~~--a~~~~~g~~~~g~~~--~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~ 73 (135)
T 2lea_A 5 HHHHHHSSGLV-------PRGS--HMASMTGGQQMGRGS--MSYGRPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGR 73 (135)
T ss_dssp -----------------------------------------CCSCCSCSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSC
T ss_pred ccccccccCCC-------chhh--hhhhccCCCCCCCCC--CCcCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCC
Confidence 45666666632 3666 77777665 22221 222333344455789999999999999999999999999
Q ss_pred eeEEEEecCC--CCCceEEEEEeCCHHHHHHHHH-ccccccCCeeEEEeeCCCC
Q 017897 205 VVDCRICGDP--NSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSKTA 255 (364)
Q Consensus 205 i~~~~i~~d~--~~~rG~aFV~F~~~~~A~~al~-l~g~~l~g~~i~V~~a~~~ 255 (364)
|..|+++.++ +.++|||||+|.+.++|++|++ |++..+.|++|.|.+++..
T Consensus 74 i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~ 127 (135)
T 2lea_A 74 VGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYG 127 (135)
T ss_dssp CSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCCC
T ss_pred EEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCC
Confidence 9999999886 4579999999999999999998 9999999999999998753
No 59
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.74 E-value=1.8e-17 Score=126.19 Aligned_cols=79 Identities=22% Similarity=0.319 Sum_probs=72.8
Q ss_pred CceEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccC--CCCeeEEEEEecCHHHHHHHHh-cCCCeeCCeeeEEeec
Q 017897 274 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSPS 350 (364)
Q Consensus 274 ~~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~--~~~kg~afV~F~~~e~A~~Al~-lng~~~~g~~l~V~~a 350 (364)
..++|||+|||..+++++|+++|++| |.|.+|.++++. +.++|||||+|.+.++|.+|+. |||..++|+.|+|.|+
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~-G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPF-GRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGG-SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhc-CCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 45899999999999999999999997 999999999874 6889999999999999999999 9999999999999999
Q ss_pred CCC
Q 017897 351 KTP 353 (364)
Q Consensus 351 k~~ 353 (364)
+++
T Consensus 84 ~~k 86 (87)
T 3bs9_A 84 TRK 86 (87)
T ss_dssp C--
T ss_pred CCC
Confidence 875
No 60
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=3.5e-17 Score=128.86 Aligned_cols=85 Identities=19% Similarity=0.295 Sum_probs=78.4
Q ss_pred ccCceEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccCCCCeeEEEEEecCHHHHHHHHh-cCCCeeCCeeeEEeec
Q 017897 272 EMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSPS 350 (364)
Q Consensus 272 ~~~~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~e~A~~Al~-lng~~~~g~~l~V~~a 350 (364)
....++|||+|||..+++++|+++|++| |.|..|.|+++.+.++|||||+|.+.++|.+|+. ||+..|+|+.|+|.|+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~-G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 90 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRDPDLRQMFGQF-GKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNA 90 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHGGGT-SCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc-CCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 4456899999999999999999999997 9999999999876789999999999999999999 9999999999999999
Q ss_pred CCCCCCC
Q 017897 351 KTPVRPR 357 (364)
Q Consensus 351 k~~~~~~ 357 (364)
+++..+.
T Consensus 91 ~~~~~~~ 97 (103)
T 2cq3_A 91 TARVMTN 97 (103)
T ss_dssp CSSCCCC
T ss_pred ccCCCCC
Confidence 9875443
No 61
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.74 E-value=2.3e-17 Score=132.61 Aligned_cols=85 Identities=18% Similarity=0.273 Sum_probs=77.8
Q ss_pred ccCceEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccC--CCCeeEEEEEecCHHHHHHHHh-cCCCeeCCeeeEEe
Q 017897 272 EMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVS 348 (364)
Q Consensus 272 ~~~~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~--~~~kg~afV~F~~~e~A~~Al~-lng~~~~g~~l~V~ 348 (364)
....++|||+|||..+++++|+++|++| |.|..|.|+++. +.++|||||+|.+.++|.+|+. ||+..|+|+.|+|.
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~-G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 100 (115)
T 2cpz_A 22 GPEGANLFIYHLPQEFGDQDLLQMFMPF-GNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQ 100 (115)
T ss_dssp CSTTCCEEEESCCSSCCHHHHHHHHGGG-SCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhc-CCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 3456899999999999999999999997 999999999885 6889999999999999999998 99999999999999
Q ss_pred ecCCCCCCC
Q 017897 349 PSKTPVRPR 357 (364)
Q Consensus 349 ~ak~~~~~~ 357 (364)
|++++..++
T Consensus 101 ~a~~~~~~~ 109 (115)
T 2cpz_A 101 LKRSKNDSK 109 (115)
T ss_dssp CCCCSCCCC
T ss_pred EcCCCCcCC
Confidence 999874433
No 62
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.74 E-value=3e-18 Score=132.15 Aligned_cols=77 Identities=21% Similarity=0.213 Sum_probs=70.3
Q ss_pred CcEEEEeCCCCCCcHHHHHHHhhcCC-CeeEEEEecCCC--CCceEEEEEeCCHHHHHHHHH-c-cccccCCeeEEEeeC
Q 017897 178 RRTVYVSDIDQQVTEEQLATLFLTCG-QVVDCRICGDPN--SVLRFAFVEFTDEEGARAALS-L-AGTMLGFYPVRVLPS 252 (364)
Q Consensus 178 ~~~lfV~nLp~~~te~~L~~~F~~~G-~i~~~~i~~d~~--~~rG~aFV~F~~~~~A~~al~-l-~g~~l~g~~i~V~~a 252 (364)
+.+|||+|||+++|+++|+++|++|| .|.+|+|++|+. .+||||||+|.+.++|.+||+ + ++..+.|++|.|.++
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 36899999999999999999999999 899999999874 579999999999999999998 5 566799999999998
Q ss_pred CC
Q 017897 253 KT 254 (364)
Q Consensus 253 ~~ 254 (364)
.+
T Consensus 81 ~~ 82 (91)
T 2lxi_A 81 DP 82 (91)
T ss_dssp CS
T ss_pred CC
Confidence 64
No 63
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=2.3e-17 Score=129.85 Aligned_cols=85 Identities=26% Similarity=0.341 Sum_probs=78.0
Q ss_pred ccCceEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccC--CCCeeEEEEEecCHHHHHHHHh-cCCCeeCCeeeEEe
Q 017897 272 EMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVS 348 (364)
Q Consensus 272 ~~~~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~--~~~kg~afV~F~~~e~A~~Al~-lng~~~~g~~l~V~ 348 (364)
....++|||+|||..+++++|+++|++| |.|..|.|+++. +.++|||||+|.+.++|.+|+. |||..|+|+.|+|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~-G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPF-GSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVE 90 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTT-CCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhC-CCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 3456999999999999999999999997 999999999874 6899999999999999999999 99999999999999
Q ss_pred ecCCCCCCC
Q 017897 349 PSKTPVRPR 357 (364)
Q Consensus 349 ~ak~~~~~~ 357 (364)
|++++..+.
T Consensus 91 ~a~~~~~~~ 99 (103)
T 2cq0_A 91 WAKPSTNSG 99 (103)
T ss_dssp ESSCCCCSC
T ss_pred ECCCCCCCC
Confidence 999875443
No 64
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.73 E-value=3.8e-18 Score=132.61 Aligned_cols=80 Identities=24% Similarity=0.252 Sum_probs=72.6
Q ss_pred cCceEEEEeCCCCCCCHHHHHHHhhhcCCc--eeEEEEeccC--CCCeeEEEEEecCHHHHHHHHh-cCCC----eeCCe
Q 017897 273 MCSRTIYCTNIDKKVTQGDIKLFFESVCGE--VQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGA----VLGSL 343 (364)
Q Consensus 273 ~~~~~l~V~nLp~~~tee~L~~~F~~~~G~--I~~v~i~~d~--~~~kg~afV~F~~~e~A~~Al~-lng~----~~~g~ 343 (364)
....+|||+|||+.+|+++|+++|++| |. |.+|++++|+ +.++|||||+|.+.++|.+|++ |||. .++|+
T Consensus 7 ~~m~tlfV~nL~~~~tee~L~~~F~~~-G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr 85 (95)
T 2lkz_A 7 HHMDTIILRNIAPHTVVDSIMTALSPY-ASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGK 85 (95)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHSTTT-CCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTE
T ss_pred CccCEEEEeCCCCcCCHHHHHHHHHhh-CCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCE
Confidence 345799999999999999999999997 95 6799999986 6899999999999999999999 9986 59999
Q ss_pred eeEEeecCCC
Q 017897 344 PIRVSPSKTP 353 (364)
Q Consensus 344 ~l~V~~ak~~ 353 (364)
+|.|+||+..
T Consensus 86 ~i~V~~Akss 95 (95)
T 2lkz_A 86 TIGVDFAKSA 95 (95)
T ss_dssp EEEEEECCCC
T ss_pred EEEEEEccCC
Confidence 9999999863
No 65
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.73 E-value=3.3e-18 Score=131.53 Aligned_cols=77 Identities=18% Similarity=0.270 Sum_probs=68.1
Q ss_pred cEEEEeCCCCCCcHHHHHHHhhcCC--CeeEEEEecCCC--CCceEEEEEeCCHHHHHHHHH-ccccccCCeeEEEeeCC
Q 017897 179 RTVYVSDIDQQVTEEQLATLFLTCG--QVVDCRICGDPN--SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSK 253 (364)
Q Consensus 179 ~~lfV~nLp~~~te~~L~~~F~~~G--~i~~~~i~~d~~--~~rG~aFV~F~~~~~A~~al~-l~g~~l~g~~i~V~~a~ 253 (364)
.+|||+|||.++++++|+++|++|| .|.+++++.|+. .++|||||+|.+.++|++|++ |+|..+.|+.|.|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 5799999999999999999999999 999999999864 579999999999999999997 99999999999999986
Q ss_pred CC
Q 017897 254 TA 255 (364)
Q Consensus 254 ~~ 255 (364)
+.
T Consensus 82 ~~ 83 (90)
T 3p5t_L 82 KL 83 (90)
T ss_dssp --
T ss_pred CC
Confidence 53
No 66
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.4e-17 Score=129.19 Aligned_cols=85 Identities=24% Similarity=0.305 Sum_probs=77.6
Q ss_pred cCceEEEEeCCCCCCCHHHHHHHhhhcCCceeEE-EEeccC--CCCeeEEEEEecCHHHHHHHHh-cCCCeeCCeeeEEe
Q 017897 273 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRL-RLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVS 348 (364)
Q Consensus 273 ~~~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v-~i~~d~--~~~kg~afV~F~~~e~A~~Al~-lng~~~~g~~l~V~ 348 (364)
.+.++|||+|||..+++++|+++|++| |.|..+ .|+++. +.++|||||+|.+.++|.+|+. |||..++|+.|+|.
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 81 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAF-GVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVS 81 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTT-SCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc-CCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 356899999999999999999999997 999999 999874 6789999999999999999999 99999999999999
Q ss_pred ecCCCCCCCC
Q 017897 349 PSKTPVRPRA 358 (364)
Q Consensus 349 ~ak~~~~~~~ 358 (364)
|++++..++.
T Consensus 82 ~a~~~~~~~~ 91 (96)
T 1x5t_A 82 YAFKKDSKGS 91 (96)
T ss_dssp ESCCCCCCCC
T ss_pred EecccCCCCC
Confidence 9998765443
No 67
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=1.9e-17 Score=130.34 Aligned_cols=85 Identities=18% Similarity=0.348 Sum_probs=78.6
Q ss_pred ccCceEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccCCCCeeEEEEEecCHHHHHHHHh-cCCCeeCCeeeEEeec
Q 017897 272 EMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSPS 350 (364)
Q Consensus 272 ~~~~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~e~A~~Al~-lng~~~~g~~l~V~~a 350 (364)
....++|||+|||..+++++|+++|++| |.|..|.++++.+.++|||||+|.+.++|.+|+. |||..+.|+.|+|.|+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~-G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDERLRKAFSPF-GTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 90 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHHHHHTTTTT-SCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc-CCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 4467899999999999999999999996 9999999999877889999999999999999999 9999999999999999
Q ss_pred CCCCCCC
Q 017897 351 KTPVRPR 357 (364)
Q Consensus 351 k~~~~~~ 357 (364)
+++..++
T Consensus 91 ~~~~~~~ 97 (103)
T 2d9p_A 91 QRKEERQ 97 (103)
T ss_dssp SSCCCCC
T ss_pred cccccCC
Confidence 9875444
No 68
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.73 E-value=3.8e-18 Score=132.65 Aligned_cols=78 Identities=19% Similarity=0.217 Sum_probs=70.6
Q ss_pred CCcEEEEeCCCCCCcHHHHHHHhhcCCC--eeEEEEecCCC--CCceEEEEEeCCHHHHHHHHH-cccc----ccCCeeE
Q 017897 177 IRRTVYVSDIDQQVTEEQLATLFLTCGQ--VVDCRICGDPN--SVLRFAFVEFTDEEGARAALS-LAGT----MLGFYPV 247 (364)
Q Consensus 177 ~~~~lfV~nLp~~~te~~L~~~F~~~G~--i~~~~i~~d~~--~~rG~aFV~F~~~~~A~~al~-l~g~----~l~g~~i 247 (364)
.-.+|||+|||+++|+++|+++|++||. |.+|++++|+. .+||||||+|.+.++|.+|++ |++. .+.|++|
T Consensus 8 ~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i 87 (95)
T 2lkz_A 8 HMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTI 87 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEE
T ss_pred ccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEE
Confidence 3578999999999999999999999995 67999999874 579999999999999999998 9986 4899999
Q ss_pred EEeeCCC
Q 017897 248 RVLPSKT 254 (364)
Q Consensus 248 ~V~~a~~ 254 (364)
.|.|++.
T Consensus 88 ~V~~Aks 94 (95)
T 2lkz_A 88 GVDFAKS 94 (95)
T ss_dssp EEEECCC
T ss_pred EEEEccC
Confidence 9999863
No 69
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.73 E-value=2.6e-17 Score=129.99 Aligned_cols=84 Identities=20% Similarity=0.270 Sum_probs=77.3
Q ss_pred ccCceEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccC-CCCeeEEEEEecCHHHHHHHHh-cCCCeeCC---eeeE
Q 017897 272 EMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY-QHSTRIAFVEFAMAESAIAALN-CSGAVLGS---LPIR 346 (364)
Q Consensus 272 ~~~~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~-~~~kg~afV~F~~~e~A~~Al~-lng~~~~g---~~l~ 346 (364)
....++|||+|||..+++++|+++|++| |.|..|.|+++. +.++|||||+|.+.++|.+|+. |||..+.| +.|+
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~ 90 (105)
T 2dnh_A 12 GGRDRKLFVGMLNKQQSEEDVLRLFQPF-GVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLV 90 (105)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHHHHTTT-SCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc-CCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEE
Confidence 4457899999999999999999999997 999999999885 6789999999999999999999 99999988 9999
Q ss_pred EeecCCCCCC
Q 017897 347 VSPSKTPVRP 356 (364)
Q Consensus 347 V~~ak~~~~~ 356 (364)
|.|++++..+
T Consensus 91 V~~a~~~~~~ 100 (105)
T 2dnh_A 91 VKFADTDKES 100 (105)
T ss_dssp EEESCSSCCC
T ss_pred EEECccCccc
Confidence 9999987543
No 70
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=2.1e-17 Score=128.83 Aligned_cols=84 Identities=23% Similarity=0.345 Sum_probs=76.8
Q ss_pred CceEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccCC-----CCeeEEEEEecCHHHHHHHHh-cCCCeeCCeeeEE
Q 017897 274 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQ-----HSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRV 347 (364)
Q Consensus 274 ~~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~~-----~~kg~afV~F~~~e~A~~Al~-lng~~~~g~~l~V 347 (364)
+.++|||+|||..+++++|+++|++| |.|..|.++++.. .++|||||+|.+.++|.+|+. |||..++|+.|+|
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKV-GAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTT-SCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhc-CCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 45899999999999999999999997 9999999998653 689999999999999999999 9999999999999
Q ss_pred eecCCCCCCCC
Q 017897 348 SPSKTPVRPRA 358 (364)
Q Consensus 348 ~~ak~~~~~~~ 358 (364)
.|+++...++.
T Consensus 83 ~~a~~~~~~~~ 93 (98)
T 2cpf_A 83 RISERATKPAS 93 (98)
T ss_dssp ECSSCSSCCCC
T ss_pred EEccCCCCCCC
Confidence 99998755443
No 71
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=2.7e-17 Score=127.36 Aligned_cols=85 Identities=24% Similarity=0.374 Sum_probs=78.2
Q ss_pred cCceEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccC--CCCeeEEEEEecCHHHHHHHHh-cCCCeeCCeeeEEee
Q 017897 273 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSP 349 (364)
Q Consensus 273 ~~~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~--~~~kg~afV~F~~~e~A~~Al~-lng~~~~g~~l~V~~ 349 (364)
.+.++|||+|||..+++++|+++|++| |.|..|.++++. +.++|||||+|.+.++|.+|+. |||..+.|+.|+|.|
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~-G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 81 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPF-GKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGH 81 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTT-SCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhc-CCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEE
Confidence 346899999999999999999999997 999999999985 6889999999999999999999 999999999999999
Q ss_pred cCCCCCCCC
Q 017897 350 SKTPVRPRA 358 (364)
Q Consensus 350 ak~~~~~~~ 358 (364)
++++..+..
T Consensus 82 a~~~~~~~~ 90 (95)
T 2dnz_A 82 VTERLDGGS 90 (95)
T ss_dssp SSCCCCCCC
T ss_pred cccccCCCC
Confidence 998765543
No 72
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.73 E-value=3.5e-17 Score=123.41 Aligned_cols=77 Identities=17% Similarity=0.282 Sum_probs=73.1
Q ss_pred eEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccC--CCCeeEEEEEecCHHHHHHHHh-cCCCeeCCeeeEEeecCC
Q 017897 276 RTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSPSKT 352 (364)
Q Consensus 276 ~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~--~~~kg~afV~F~~~e~A~~Al~-lng~~~~g~~l~V~~ak~ 352 (364)
.+|||+|||..+++++|+++|++| |.|.++.++++. +.++|||||+|.+.++|.+|+. |||..++|+.|+|.|+++
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~-G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDF-PSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTS-TTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhc-CCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 689999999999999999999997 999999999874 6889999999999999999999 999999999999999987
Q ss_pred C
Q 017897 353 P 353 (364)
Q Consensus 353 ~ 353 (364)
+
T Consensus 81 ~ 81 (83)
T 3md1_A 81 L 81 (83)
T ss_dssp C
T ss_pred C
Confidence 5
No 73
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.73 E-value=5.3e-17 Score=130.41 Aligned_cols=84 Identities=24% Similarity=0.387 Sum_probs=76.5
Q ss_pred cCCCCCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCC--CCCceEEEEEeCCHHHHHHHHH-ccccccCCeeEEE
Q 017897 173 QDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP--NSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRV 249 (364)
Q Consensus 173 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~--~~~rG~aFV~F~~~~~A~~al~-l~g~~l~g~~i~V 249 (364)
......++|||+|||.++++++|+++|+.||.|.+|+|+.++ +.++|||||+|.+.++|++||+ |++..|.|+.|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 89 (115)
T 2dgo_A 10 KDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRT 89 (115)
T ss_dssp CCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 344567899999999999999999999999999999999986 3469999999999999999998 9999999999999
Q ss_pred eeCCCCC
Q 017897 250 LPSKTAI 256 (364)
Q Consensus 250 ~~a~~~~ 256 (364)
.+++...
T Consensus 90 ~~a~~~~ 96 (115)
T 2dgo_A 90 NWATRKP 96 (115)
T ss_dssp EESSCCC
T ss_pred EEccCCC
Confidence 9987643
No 74
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.73 E-value=2.2e-17 Score=125.84 Aligned_cols=79 Identities=24% Similarity=0.365 Sum_probs=72.7
Q ss_pred CCCCCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEeCCHHHHHHHHHccccccCCeeEEEee
Q 017897 174 DEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLP 251 (364)
Q Consensus 174 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~~--~~rG~aFV~F~~~~~A~~al~l~g~~l~g~~i~V~~ 251 (364)
.+...++|||+|||+++++++|+++|++||.|.+++++.++. .++|||||+|.+.++|.+|+++++..+.|++|.|++
T Consensus 7 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~v~~ 86 (87)
T 3s7r_A 7 NEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKK 86 (87)
T ss_dssp CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHSSCEEETTEEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHhCCCEECCEEEEEEe
Confidence 345678999999999999999999999999999999999874 469999999999999999999888899999999987
Q ss_pred C
Q 017897 252 S 252 (364)
Q Consensus 252 a 252 (364)
|
T Consensus 87 A 87 (87)
T 3s7r_A 87 A 87 (87)
T ss_dssp C
T ss_pred C
Confidence 5
No 75
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.73 E-value=3.7e-18 Score=131.24 Aligned_cols=81 Identities=17% Similarity=0.216 Sum_probs=68.6
Q ss_pred eEEEEeCCCCCCCHHHHHHHhhhcCC--ceeEEEEeccC--CCCeeEEEEEecCHHHHHHHHh-cCCCeeCCeeeEEeec
Q 017897 276 RTIYCTNIDKKVTQGDIKLFFESVCG--EVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSPS 350 (364)
Q Consensus 276 ~~l~V~nLp~~~tee~L~~~F~~~~G--~I~~v~i~~d~--~~~kg~afV~F~~~e~A~~Al~-lng~~~~g~~l~V~~a 350 (364)
.+|||+|||..+++++|+++|++| | .|.++.++++. +.++|||||+|.+.++|.+|+. |||..++|+.|+|.++
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~-G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~ 80 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSL-GVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPS 80 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTT-TCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHh-CCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEEC
Confidence 589999999999999999999997 9 99999999884 7899999999999999999998 9999999999999999
Q ss_pred CCCCCCC
Q 017897 351 KTPVRPR 357 (364)
Q Consensus 351 k~~~~~~ 357 (364)
+++..+.
T Consensus 81 ~~~~~~~ 87 (90)
T 3p5t_L 81 NKLEHHH 87 (90)
T ss_dssp -------
T ss_pred CCCcccc
Confidence 9875443
No 76
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=4.4e-17 Score=127.31 Aligned_cols=81 Identities=20% Similarity=0.260 Sum_probs=74.8
Q ss_pred CCCCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEeCCHHHHHHHHHccccccCCeeEEEeeC
Q 017897 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPS 252 (364)
Q Consensus 175 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~~--~~rG~aFV~F~~~~~A~~al~l~g~~l~g~~i~V~~a 252 (364)
....++|||+|||.++++++|+++|++||.|.+|+++.++. .++|||||+|.+.++|.+|+++++..+.|++|.|.++
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~l~V~~a 86 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRA 86 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHHHCCCBSSSCBCEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 44578999999999999999999999999999999999864 4799999999999999999999999999999999998
Q ss_pred CCC
Q 017897 253 KTA 255 (364)
Q Consensus 253 ~~~ 255 (364)
.+.
T Consensus 87 ~~~ 89 (99)
T 2dgs_A 87 EPR 89 (99)
T ss_dssp CCC
T ss_pred CCC
Confidence 653
No 77
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.72 E-value=2.2e-17 Score=127.15 Aligned_cols=83 Identities=22% Similarity=0.195 Sum_probs=77.3
Q ss_pred cCceEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccCCCCeeEEEEEecCHHHHHHHHh-cCCCeeCCeeeEEeecC
Q 017897 273 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSPSK 351 (364)
Q Consensus 273 ~~~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~e~A~~Al~-lng~~~~g~~l~V~~ak 351 (364)
...++|||+|||..+++++|+++|++| |.|..|.++++.+.++|||||+|.+.++|.+|+. ||+..++|+.|+|.|++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~-G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 84 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNEC-GHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDR 84 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTT-SCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECS
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhc-CCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 346899999999999999999999997 9999999999878899999999999999999999 99999999999999998
Q ss_pred CCCCC
Q 017897 352 TPVRP 356 (364)
Q Consensus 352 ~~~~~ 356 (364)
++..+
T Consensus 85 ~~~~~ 89 (92)
T 2dgv_A 85 NASGP 89 (92)
T ss_dssp CCSSC
T ss_pred CCCCC
Confidence 87543
No 78
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=2.5e-17 Score=128.20 Aligned_cols=78 Identities=22% Similarity=0.232 Sum_probs=73.6
Q ss_pred CCcEEEEeCCCCCCcHHHHH----HHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-ccccccCCeeEEEee
Q 017897 177 IRRTVYVSDIDQQVTEEQLA----TLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLP 251 (364)
Q Consensus 177 ~~~~lfV~nLp~~~te~~L~----~~F~~~G~i~~~~i~~d~~~~rG~aFV~F~~~~~A~~al~-l~g~~l~g~~i~V~~ 251 (364)
..++|||+|||+++++++|+ ++|++||.|.+|+++.|+.+ +|||||+|.+.++|.+|++ |||..+.|++|+|.+
T Consensus 8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~-rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~ 86 (96)
T 2dgx_A 8 NGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY-QLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVSL 86 (96)
T ss_dssp SCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST-TCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC-CeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 46789999999999999999 99999999999999999877 8999999999999999998 999999999999999
Q ss_pred CCCC
Q 017897 252 SKTA 255 (364)
Q Consensus 252 a~~~ 255 (364)
+++.
T Consensus 87 a~~~ 90 (96)
T 2dgx_A 87 ATGA 90 (96)
T ss_dssp CCCS
T ss_pred cCCC
Confidence 8653
No 79
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=2.2e-17 Score=129.74 Aligned_cols=86 Identities=17% Similarity=0.297 Sum_probs=78.7
Q ss_pred cCceEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccC--CCCeeEEEEEecCHHHHHHHHh-cCCCeeCCeeeEEee
Q 017897 273 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSP 349 (364)
Q Consensus 273 ~~~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~--~~~kg~afV~F~~~e~A~~Al~-lng~~~~g~~l~V~~ 349 (364)
...++|||+|||..+++++|+++|++| |.|..|.++++. +.++|||||+|.+.++|.+|+. ||+..|.|+.|+|.|
T Consensus 10 ~~~~~l~v~nLp~~~t~~~l~~~f~~~-G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 88 (102)
T 1x5s_A 10 SDEGKLFVGGLSFDTNEQSLEQVFSKY-GQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQ 88 (102)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHHH-SCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhc-CCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 356899999999999999999999997 999999999875 6789999999999999999998 999999999999999
Q ss_pred cCCCCCCCCC
Q 017897 350 SKTPVRPRAP 359 (364)
Q Consensus 350 ak~~~~~~~~ 359 (364)
++++...+..
T Consensus 89 a~~~~~~~~~ 98 (102)
T 1x5s_A 89 AGKSSDNRSG 98 (102)
T ss_dssp EECCCCCCCC
T ss_pred CCCCCCCCCC
Confidence 9987665543
No 80
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=3.9e-17 Score=127.86 Aligned_cols=83 Identities=18% Similarity=0.300 Sum_probs=76.8
Q ss_pred ccCceEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccC-CCCeeEEEEEecCHHHHHHHHh-cCCCeeCCeeeEEee
Q 017897 272 EMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY-QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSP 349 (364)
Q Consensus 272 ~~~~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~-~~~kg~afV~F~~~e~A~~Al~-lng~~~~g~~l~V~~ 349 (364)
....++|||+|||..+++++|+++|++| |.|.+|.++++. +.++|||||+|.+.++|.+|+. |||..++|+.|+|.|
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~-G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 92 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKAH-GTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAI 92 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTT-SCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhC-CCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3456899999999999999999999997 999999999886 7889999999999999999998 999999999999999
Q ss_pred cCCCCC
Q 017897 350 SKTPVR 355 (364)
Q Consensus 350 ak~~~~ 355 (364)
++++..
T Consensus 93 a~~~~~ 98 (100)
T 2do4_A 93 SNSGPS 98 (100)
T ss_dssp CCCCSC
T ss_pred CCCCCC
Confidence 987643
No 81
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.8e-17 Score=130.20 Aligned_cols=85 Identities=26% Similarity=0.390 Sum_probs=77.8
Q ss_pred cCceEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccC--CCCeeEEEEEecCHHHHHHHHh-cCCCeeCCeeeEEee
Q 017897 273 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSP 349 (364)
Q Consensus 273 ~~~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~--~~~kg~afV~F~~~e~A~~Al~-lng~~~~g~~l~V~~ 349 (364)
...++|||+|||..+++++|+++|++| |.|..|.|+++. +.++|||||+|.+.++|.+|+. ||+..|+|+.|+|.|
T Consensus 10 ~~~~~l~V~nLp~~~t~~~l~~~f~~~-G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVDDKVLHAAFIPF-GDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 88 (102)
T ss_dssp CCCSCEEEESCCSSCCHHHHHHHHTTT-SCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhcc-CCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEe
Confidence 456899999999999999999999996 999999999874 6789999999999999999999 999999999999999
Q ss_pred cCCCCCCCC
Q 017897 350 SKTPVRPRA 358 (364)
Q Consensus 350 ak~~~~~~~ 358 (364)
++++..++.
T Consensus 89 a~~~~~~~~ 97 (102)
T 2cqb_A 89 AKPMRIKES 97 (102)
T ss_dssp CCCCCCCCC
T ss_pred CCCCCCCCC
Confidence 998755443
No 82
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=3.5e-17 Score=127.32 Aligned_cols=81 Identities=23% Similarity=0.284 Sum_probs=75.0
Q ss_pred CceEEEEeCCCCCCCHHHHH----HHhhhcCCceeEEEEeccCCCCeeEEEEEecCHHHHHHHHh-cCCCeeCCeeeEEe
Q 017897 274 CSRTIYCTNIDKKVTQGDIK----LFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVS 348 (364)
Q Consensus 274 ~~~~l~V~nLp~~~tee~L~----~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~e~A~~Al~-lng~~~~g~~l~V~ 348 (364)
..++|||+|||..+++++|+ ++|++| |.|.+|.|+++... +|||||+|.+.++|.+|+. |||..++|++|+|.
T Consensus 8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~-G~v~~v~i~~~~~~-rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~ 85 (96)
T 2dgx_A 8 NGADVQVSNIDYRLSRKELQQLLQEAFARH-GKVKSVELSPHTDY-QLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVS 85 (96)
T ss_dssp SCEEEEEESCCTTSCHHHHHHHHHHHHHHH-SCEEEEEECSCCST-TCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhcccc-CcEEEEEEEeCCCC-CeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 45899999999999999999 999997 99999999998755 8899999999999999999 99999999999999
Q ss_pred ecCCCCCC
Q 017897 349 PSKTPVRP 356 (364)
Q Consensus 349 ~ak~~~~~ 356 (364)
|++++..+
T Consensus 86 ~a~~~~~~ 93 (96)
T 2dgx_A 86 LATGASGP 93 (96)
T ss_dssp ECCCSSCC
T ss_pred EcCCCCCC
Confidence 99876543
No 83
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=2.3e-17 Score=130.06 Aligned_cols=80 Identities=26% Similarity=0.308 Sum_probs=72.2
Q ss_pred cCceEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccCCCCeeEEEEEecCHHHHHHHHh-cC--CCeeCCeeeEEee
Q 017897 273 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CS--GAVLGSLPIRVSP 349 (364)
Q Consensus 273 ~~~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~e~A~~Al~-ln--g~~~~g~~l~V~~ 349 (364)
.+.++|||+|||+.+++++|+++|++| |.|.+|.|+++ +|||||+|.+.++|.+|+. |+ +..|.|++|+|.|
T Consensus 14 ~~~~~LfV~nLp~~vte~dL~~lF~~f-G~V~~v~i~~~----kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~ 88 (105)
T 1sjq_A 14 VPSRVIHIRKLPIDVTEGEVISLGLPF-GKVTNLLMLKG----KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQF 88 (105)
T ss_dssp CCCCEEEECSCCTTSCHHHHHHHHHHH-CCEEEEEEETT----TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc-CCEEEEEEEcC----CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEE
Confidence 456899999999999999999999997 99999999986 5699999999999999999 76 4799999999999
Q ss_pred cCCCCCCC
Q 017897 350 SKTPVRPR 357 (364)
Q Consensus 350 ak~~~~~~ 357 (364)
++++...+
T Consensus 89 A~~~~~~~ 96 (105)
T 1sjq_A 89 SNHKELKT 96 (105)
T ss_dssp CSSSSCCC
T ss_pred cCCCCCCc
Confidence 98765444
No 84
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.72 E-value=3.3e-17 Score=123.55 Aligned_cols=76 Identities=24% Similarity=0.372 Sum_probs=71.5
Q ss_pred cEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEeCCHHHHHHHHH-ccccccCCeeEEEeeCCC
Q 017897 179 RTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSKT 254 (364)
Q Consensus 179 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~~--~~rG~aFV~F~~~~~A~~al~-l~g~~l~g~~i~V~~a~~ 254 (364)
.+|||+|||+++++++|+++|++||.|.+++++.++. .++|||||+|.+.++|.+|++ |+|..+.|++|.|.++++
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 6899999999999999999999999999999999864 469999999999999999998 999999999999999864
No 85
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=3.7e-17 Score=128.66 Aligned_cols=82 Identities=22% Similarity=0.311 Sum_probs=75.4
Q ss_pred CCCCCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEeCCHHHHHHHHH-ccccccCCeeEEEe
Q 017897 174 DEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVL 250 (364)
Q Consensus 174 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~~--~~rG~aFV~F~~~~~A~~al~-l~g~~l~g~~i~V~ 250 (364)
.....++|||+|||.++++++|+++|++||.|.+|+++.++. .++|||||+|.+.++|.+|++ |++..+.|++|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (103)
T 2cq0_A 11 RADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVE 90 (103)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 345678999999999999999999999999999999999863 469999999999999999998 99999999999999
Q ss_pred eCCCC
Q 017897 251 PSKTA 255 (364)
Q Consensus 251 ~a~~~ 255 (364)
++...
T Consensus 91 ~a~~~ 95 (103)
T 2cq0_A 91 WAKPS 95 (103)
T ss_dssp ESSCC
T ss_pred ECCCC
Confidence 98653
No 86
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=2.5e-17 Score=128.45 Aligned_cols=79 Identities=28% Similarity=0.431 Sum_probs=73.7
Q ss_pred CCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCCC-----CCceEEEEEeCCHHHHHHHHH-ccccccCCeeEEEe
Q 017897 177 IRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN-----SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVL 250 (364)
Q Consensus 177 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~~-----~~rG~aFV~F~~~~~A~~al~-l~g~~l~g~~i~V~ 250 (364)
..++|||+|||+++++++|+++|++||.|.+|+++.++. .++|||||+|.+.++|.+|++ |++..+.|++|.|.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 83 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVR 83 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 468999999999999999999999999999999998765 468999999999999999998 99999999999999
Q ss_pred eCCCC
Q 017897 251 PSKTA 255 (364)
Q Consensus 251 ~a~~~ 255 (364)
+++..
T Consensus 84 ~a~~~ 88 (98)
T 2cpf_A 84 ISERA 88 (98)
T ss_dssp CSSCS
T ss_pred EccCC
Confidence 98754
No 87
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=7.2e-17 Score=129.88 Aligned_cols=88 Identities=17% Similarity=0.287 Sum_probs=79.5
Q ss_pred ccCceEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccC--CCCeeEEEEEecCHHHHHHHHh-cCCCeeCCeeeEEe
Q 017897 272 EMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVS 348 (364)
Q Consensus 272 ~~~~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~--~~~kg~afV~F~~~e~A~~Al~-lng~~~~g~~l~V~ 348 (364)
....++|||+|||..+++++|+++|++| |.|..|.|++++ +.++|||||+|.+.++|.+||. +++ .|.|+.|+|.
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~-G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~ 91 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYHTTDASLRKYFEGF-GDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVN 91 (116)
T ss_dssp SCSSSEEEEECCCSSCCHHHHHHHHHTT-SCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhC-CCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEE
Confidence 4456899999999999999999999997 999999999885 6899999999999999999999 998 8999999999
Q ss_pred ecCCCCCCCCCCC
Q 017897 349 PSKTPVRPRAPRP 361 (364)
Q Consensus 349 ~ak~~~~~~~~r~ 361 (364)
|+++...++..++
T Consensus 92 ~a~~~~~~~~~~~ 104 (116)
T 2cqd_A 92 LAYLGAKPRSLQT 104 (116)
T ss_dssp ESTTTCCCCCCCC
T ss_pred EcccCCCccccCC
Confidence 9988766665544
No 88
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=4.3e-17 Score=127.35 Aligned_cols=84 Identities=17% Similarity=0.236 Sum_probs=77.2
Q ss_pred cCceEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccC--CCCeeEEEEEecCHHHHHHHHhcCCCeeCCeeeEEeec
Q 017897 273 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALNCSGAVLGSLPIRVSPS 350 (364)
Q Consensus 273 ~~~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~--~~~kg~afV~F~~~e~A~~Al~lng~~~~g~~l~V~~a 350 (364)
...++|||+|||..+++++|+++|++| |.|..|.++++. +.++|||||+|.+.++|.+|+.||+..++|+.|+|.|+
T Consensus 8 ~~~~~l~V~nlp~~~t~~~l~~~F~~~-G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~l~V~~a 86 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCGETELREYFKKF-GVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRA 86 (99)
T ss_dssp SSCCEEEEESCCSSCCHHHHHHHHSSS-SCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHHHCCCBSSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc-CCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 356899999999999999999999996 999999999875 67899999999999999999999999999999999999
Q ss_pred CCCCCCC
Q 017897 351 KTPVRPR 357 (364)
Q Consensus 351 k~~~~~~ 357 (364)
+++..+.
T Consensus 87 ~~~~~~~ 93 (99)
T 2dgs_A 87 EPRDSKS 93 (99)
T ss_dssp CCCCCCC
T ss_pred CCCcccC
Confidence 9875444
No 89
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.72 E-value=3e-17 Score=126.36 Aligned_cols=80 Identities=21% Similarity=0.224 Sum_probs=74.9
Q ss_pred CCCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-ccccccCCeeEEEeeCCC
Q 017897 176 VIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSKT 254 (364)
Q Consensus 176 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~~~~rG~aFV~F~~~~~A~~al~-l~g~~l~g~~i~V~~a~~ 254 (364)
...++|||+|||.++++++|+++|++||.|.+++++.+.+.++|||||+|.+.++|.+|++ |++..+.|++|.|.+++.
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 85 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDRN 85 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECSC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCC
Confidence 3568999999999999999999999999999999999877789999999999999999998 999999999999999865
Q ss_pred C
Q 017897 255 A 255 (364)
Q Consensus 255 ~ 255 (364)
.
T Consensus 86 ~ 86 (92)
T 2dgv_A 86 A 86 (92)
T ss_dssp C
T ss_pred C
Confidence 3
No 90
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.7e-17 Score=132.34 Aligned_cols=83 Identities=22% Similarity=0.322 Sum_probs=76.9
Q ss_pred ccCCCCCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-ccccccCCeeEEEe
Q 017897 172 QQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVL 250 (364)
Q Consensus 172 ~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~~~~rG~aFV~F~~~~~A~~al~-l~g~~l~g~~i~V~ 250 (364)
.......++|||+|||.++++++|+++|++||.|.+++++.+++.++|||||+|.+.++|++|++ |+|..+.|++|.|.
T Consensus 23 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 102 (109)
T 2err_A 23 TENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVN 102 (109)
T ss_dssp CSCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEE
T ss_pred ccCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34455678999999999999999999999999999999999987789999999999999999998 99999999999999
Q ss_pred eCCC
Q 017897 251 PSKT 254 (364)
Q Consensus 251 ~a~~ 254 (364)
+++.
T Consensus 103 ~a~~ 106 (109)
T 2err_A 103 NATA 106 (109)
T ss_dssp ECCC
T ss_pred ECCC
Confidence 9854
No 91
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=4.4e-17 Score=128.27 Aligned_cols=81 Identities=21% Similarity=0.396 Sum_probs=75.1
Q ss_pred CCCCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-ccccccCCeeEEEeeCC
Q 017897 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSK 253 (364)
Q Consensus 175 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~~~~rG~aFV~F~~~~~A~~al~-l~g~~l~g~~i~V~~a~ 253 (364)
....++|||+|||+++++++|+++|++||.|.+|+++.+.+.++|||||+|.+.++|.+|++ |++..+.|++|.|.++.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 91 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 91 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEec
Confidence 34578999999999999999999999999999999999855679999999999999999998 99999999999999986
Q ss_pred CC
Q 017897 254 TA 255 (364)
Q Consensus 254 ~~ 255 (364)
..
T Consensus 92 ~~ 93 (103)
T 2d9p_A 92 RK 93 (103)
T ss_dssp SC
T ss_pred cc
Confidence 53
No 92
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=6.6e-17 Score=125.19 Aligned_cols=80 Identities=28% Similarity=0.403 Sum_probs=74.3
Q ss_pred CCCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEeCCHHHHHHHHH-ccccccCCeeEEEeeC
Q 017897 176 VIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPS 252 (364)
Q Consensus 176 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~~--~~rG~aFV~F~~~~~A~~al~-l~g~~l~g~~i~V~~a 252 (364)
...++|||+|||.++++++|+++|++||.|.+++++.++. .++|||||+|.+.++|.+|++ |++..+.|++|+|.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 3568999999999999999999999999999999999864 579999999999999999998 9999999999999998
Q ss_pred CCC
Q 017897 253 KTA 255 (364)
Q Consensus 253 ~~~ 255 (364)
...
T Consensus 83 ~~~ 85 (95)
T 2dnz_A 83 TER 85 (95)
T ss_dssp SCC
T ss_pred ccc
Confidence 653
No 93
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.72 E-value=2.8e-17 Score=124.57 Aligned_cols=78 Identities=28% Similarity=0.450 Sum_probs=72.8
Q ss_pred cCceEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccC--CCCeeEEEEEecCHHHHHHHHh-cCCCeeCCeeeEEee
Q 017897 273 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSP 349 (364)
Q Consensus 273 ~~~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~--~~~kg~afV~F~~~e~A~~Al~-lng~~~~g~~l~V~~ 349 (364)
.+.++|||+|||..+++++|+++|++| |.|.+|.++++. +.++|||||+|.+.++|.+|+. |||..++|++|+|.|
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~-G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPF-GDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGG-SCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhcc-CCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 356899999999999999999999997 999999998874 6789999999999999999998 999999999999999
Q ss_pred cC
Q 017897 350 SK 351 (364)
Q Consensus 350 ak 351 (364)
++
T Consensus 84 ak 85 (85)
T 3mdf_A 84 AK 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 85
No 94
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.71 E-value=2.8e-17 Score=125.10 Aligned_cols=78 Identities=24% Similarity=0.403 Sum_probs=72.0
Q ss_pred CCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCC--CCCceEEEEEeCCHHHHHHHHH-ccccccCCeeEEEeeCC
Q 017897 177 IRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP--NSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSK 253 (364)
Q Consensus 177 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~--~~~rG~aFV~F~~~~~A~~al~-l~g~~l~g~~i~V~~a~ 253 (364)
..++|||+|||.++++++|+++|++||.|.+++++.++ +.++|||||+|.+.++|.+|++ |++..+.|++|.|.+++
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 84 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT 84 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecC
Confidence 46899999999999999999999999999999999986 3469999999999999999998 99999999999999985
Q ss_pred C
Q 017897 254 T 254 (364)
Q Consensus 254 ~ 254 (364)
.
T Consensus 85 ~ 85 (87)
T 3bs9_A 85 R 85 (87)
T ss_dssp -
T ss_pred C
Confidence 3
No 95
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=5.8e-17 Score=126.54 Aligned_cols=80 Identities=26% Similarity=0.323 Sum_probs=74.2
Q ss_pred CCCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCC--CCCceEEEEEeCCHHHHHHHHH-ccccccCCeeEEEeeC
Q 017897 176 VIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP--NSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPS 252 (364)
Q Consensus 176 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~--~~~rG~aFV~F~~~~~A~~al~-l~g~~l~g~~i~V~~a 252 (364)
...++|||+|||+++++++|+++|+.||.|.+++++.++ +.++|||||+|.+.++|.+|++ |++..+.|++|.|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 85 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPS 85 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 457899999999999999999999999999999999987 3479999999999999999997 9999999999999998
Q ss_pred CCC
Q 017897 253 KTA 255 (364)
Q Consensus 253 ~~~ 255 (364)
...
T Consensus 86 ~~~ 88 (99)
T 1whw_A 86 TIK 88 (99)
T ss_dssp CCC
T ss_pred CCC
Confidence 653
No 96
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=4.8e-17 Score=129.67 Aligned_cols=88 Identities=19% Similarity=0.280 Sum_probs=79.2
Q ss_pred ccCceEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccC--CCCeeEEEEEecCHHHHHHHHh-cC------CCeeCC
Q 017897 272 EMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CS------GAVLGS 342 (364)
Q Consensus 272 ~~~~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~--~~~kg~afV~F~~~e~A~~Al~-ln------g~~~~g 342 (364)
....++|||+|||..+++++|+++|++| |.|..|.|+++. +.++|||||+|.+.++|.+|+. || +..|+|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~-G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g 90 (111)
T 1x4h_A 12 VTEGKTVFIRNLSFDSEEEALGEVLQQF-GDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDG 90 (111)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTT-SCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSS
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhc-CCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcC
Confidence 3456899999999999999999999997 999999999885 6789999999999999999999 99 999999
Q ss_pred eeeEEeecCCCCCCCCCC
Q 017897 343 LPIRVSPSKTPVRPRAPR 360 (364)
Q Consensus 343 ~~l~V~~ak~~~~~~~~r 360 (364)
+.|+|.|++++.....++
T Consensus 91 ~~l~v~~a~~~~~~~~~~ 108 (111)
T 1x4h_A 91 RQLKVDLAVTRDEAASGP 108 (111)
T ss_dssp CEEEEECCCCCCCCCCCC
T ss_pred EEEEEEECCCCccCCCCC
Confidence 999999999875555433
No 97
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.71 E-value=3.4e-17 Score=124.05 Aligned_cols=78 Identities=31% Similarity=0.419 Sum_probs=72.3
Q ss_pred CCCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEeCCHHHHHHHHH-ccccccCCeeEEEeeC
Q 017897 176 VIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS--VLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPS 252 (364)
Q Consensus 176 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~~~--~rG~aFV~F~~~~~A~~al~-l~g~~l~g~~i~V~~a 252 (364)
...++|||+|||+++++++|+++|++||.|.+++++.++.+ ++|||||+|.+.++|.+|++ |+|..+.|++|+|.++
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 35789999999999999999999999999999999988643 69999999999999999997 9999999999999997
Q ss_pred C
Q 017897 253 K 253 (364)
Q Consensus 253 ~ 253 (364)
+
T Consensus 85 k 85 (85)
T 3mdf_A 85 K 85 (85)
T ss_dssp C
T ss_pred C
Confidence 3
No 98
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=4.1e-17 Score=126.10 Aligned_cols=79 Identities=24% Similarity=0.317 Sum_probs=73.2
Q ss_pred CCCCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEeCCHHHHHHHHH-ccccccCCeeEEEee
Q 017897 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLP 251 (364)
Q Consensus 175 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~~--~~rG~aFV~F~~~~~A~~al~-l~g~~l~g~~i~V~~ 251 (364)
....++|||+|||+++++++|+++|++||.|.+++++.++. .++|||||+|.+.++|.+|++ |++..+.|++|.|.+
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 92 (94)
T 2e5h_A 13 APSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASI 92 (94)
T ss_dssp CCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEe
Confidence 34568999999999999999999999999999999999874 479999999999999999997 999999999999999
Q ss_pred CC
Q 017897 252 SK 253 (364)
Q Consensus 252 a~ 253 (364)
++
T Consensus 93 ak 94 (94)
T 2e5h_A 93 AI 94 (94)
T ss_dssp CC
T ss_pred cC
Confidence 73
No 99
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=5e-17 Score=125.78 Aligned_cols=81 Identities=25% Similarity=0.270 Sum_probs=74.4
Q ss_pred CCCCCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEeCCHHHHHHHHH-ccccccCCeeEEEe
Q 017897 174 DEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVL 250 (364)
Q Consensus 174 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~~--~~rG~aFV~F~~~~~A~~al~-l~g~~l~g~~i~V~ 250 (364)
.+...++|||+|||+++++++|+++|++||.|.+++++.++. .++|||||+|.+.++|.+|++ |++..+.|++|.|.
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (95)
T 2cqc_A 11 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVS 90 (95)
T ss_dssp SCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 344578999999999999999999999999999999999874 469999999999999999998 99999999999999
Q ss_pred eCCC
Q 017897 251 PSKT 254 (364)
Q Consensus 251 ~a~~ 254 (364)
+++.
T Consensus 91 ~a~~ 94 (95)
T 2cqc_A 91 GPSS 94 (95)
T ss_dssp CCSC
T ss_pred ecCC
Confidence 9853
No 100
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=7e-17 Score=126.37 Aligned_cols=80 Identities=21% Similarity=0.353 Sum_probs=74.1
Q ss_pred CCCCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCC-CCCceEEEEEeCCHHHHHHHHH-ccccccCCeeEEEeeC
Q 017897 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP-NSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPS 252 (364)
Q Consensus 175 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~-~~~rG~aFV~F~~~~~A~~al~-l~g~~l~g~~i~V~~a 252 (364)
....++|||+|||+++++++|+++|++||.|.+++++.++ +.++|||||+|.+.++|.+|++ |++..+.|++|.|.++
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 93 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAIS 93 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 3456899999999999999999999999999999999988 4468999999999999999997 9999999999999998
Q ss_pred CC
Q 017897 253 KT 254 (364)
Q Consensus 253 ~~ 254 (364)
++
T Consensus 94 ~~ 95 (100)
T 2do4_A 94 NS 95 (100)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 101
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.71 E-value=3.6e-17 Score=126.68 Aligned_cols=79 Identities=34% Similarity=0.509 Sum_probs=73.6
Q ss_pred CCCCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCCC-CCceEEEEEeCCHHHHHHHHH-ccccccCCeeEEEeeC
Q 017897 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN-SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPS 252 (364)
Q Consensus 175 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~~-~~rG~aFV~F~~~~~A~~al~-l~g~~l~g~~i~V~~a 252 (364)
....++|||+|||+.+++++|+++|++||.|.+++++.++. .++|||||+|.+.++|.+|++ |++..+.|++|.|.++
T Consensus 13 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 92 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGP 92 (95)
T ss_dssp TTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEc
Confidence 44568999999999999999999999999999999999874 469999999999999999998 9999999999999997
Q ss_pred C
Q 017897 253 K 253 (364)
Q Consensus 253 ~ 253 (364)
+
T Consensus 93 ~ 93 (95)
T 2ywk_A 93 S 93 (95)
T ss_dssp C
T ss_pred C
Confidence 5
No 102
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=6.9e-17 Score=124.98 Aligned_cols=80 Identities=23% Similarity=0.267 Sum_probs=74.8
Q ss_pred ccCceEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccC--CCCeeEEEEEecCHHHHHHHHh-cCCCeeCCeeeEEe
Q 017897 272 EMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVS 348 (364)
Q Consensus 272 ~~~~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~--~~~kg~afV~F~~~e~A~~Al~-lng~~~~g~~l~V~ 348 (364)
..+.++|||+|||..+++++|+++|++| |.|..|.++++. +.++|||||+|.+.++|.+|+. |||..++|++|+|.
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~-G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTERDLREVFSKY-GPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVS 90 (95)
T ss_dssp CCGGGCEEEESCCSSCCHHHHHHHHHTT-SCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhc-CCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 4456899999999999999999999997 999999999875 6789999999999999999999 99999999999999
Q ss_pred ecCC
Q 017897 349 PSKT 352 (364)
Q Consensus 349 ~ak~ 352 (364)
|+++
T Consensus 91 ~a~~ 94 (95)
T 2cqc_A 91 GPSS 94 (95)
T ss_dssp CCSC
T ss_pred ecCC
Confidence 9875
No 103
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.71 E-value=5.6e-17 Score=126.00 Aligned_cols=80 Identities=30% Similarity=0.338 Sum_probs=75.1
Q ss_pred ceEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccC--CCCeeEEEEEecCHHHHHHHHh-cCCCeeCCeeeEEeecC
Q 017897 275 SRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSPSK 351 (364)
Q Consensus 275 ~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~--~~~kg~afV~F~~~e~A~~Al~-lng~~~~g~~l~V~~ak 351 (364)
.++|||+|||..+++++|+++|++| |.|.+|.++++. +.++|||||+|.+.++|.+|+. |||..++|+.|+|.|++
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~-G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNV-GPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTT-SCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhc-CCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 5799999999999999999999997 999999999885 6889999999999999999999 99999999999999998
Q ss_pred CCCC
Q 017897 352 TPVR 355 (364)
Q Consensus 352 ~~~~ 355 (364)
++..
T Consensus 81 ~~~~ 84 (96)
T 2x1f_A 81 NSDI 84 (96)
T ss_dssp CSSG
T ss_pred CCCC
Confidence 8643
No 104
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=2.7e-17 Score=131.11 Aligned_cols=82 Identities=20% Similarity=0.303 Sum_probs=76.9
Q ss_pred ccCceEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccCCCCeeEEEEEecCHHHHHHHHh-cCCCeeCCeeeEEeec
Q 017897 272 EMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSPS 350 (364)
Q Consensus 272 ~~~~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~e~A~~Al~-lng~~~~g~~l~V~~a 350 (364)
....++|||+|||..+++++|+++|++| |.|.+|.++++.+.++|||||+|.+.++|.+|+. |||..++|+.|+|.|+
T Consensus 26 ~~~~~~l~V~nLp~~~te~~l~~~F~~~-G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 104 (109)
T 2err_A 26 KSQPKRLHVSNIPFRFRDPDLRQMFGQF-GKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNA 104 (109)
T ss_dssp TTCCCEEEEESCCTTCCHHHHHHHGGGT-CCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCCEEEEECCCCcCCHHHHHHHHHhc-CCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 4567899999999999999999999997 9999999999987789999999999999999999 9999999999999999
Q ss_pred CCCC
Q 017897 351 KTPV 354 (364)
Q Consensus 351 k~~~ 354 (364)
+++.
T Consensus 105 ~~~~ 108 (109)
T 2err_A 105 TARV 108 (109)
T ss_dssp CCSC
T ss_pred CCCc
Confidence 8763
No 105
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.71 E-value=5.7e-17 Score=130.74 Aligned_cols=83 Identities=20% Similarity=0.344 Sum_probs=76.9
Q ss_pred CceEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccC-CCCeeEEEEEecCHHHHHHHHh-cCCCeeCCeeeEEeecC
Q 017897 274 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY-QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSPSK 351 (364)
Q Consensus 274 ~~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~-~~~kg~afV~F~~~e~A~~Al~-lng~~~~g~~l~V~~ak 351 (364)
..++|||+|||..+++++|+++|++| |.|.+|.++++. +.++|||||+|.+.++|.+|+. |||..++|+.|+|.|++
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~~-G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 84 (116)
T 2fy1_A 6 HPGKLFIGGLNRETNEKMLKAVFGKH-GPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAK 84 (116)
T ss_dssp SCCEEEEECCTTTCCHHHHHHHHHTS-SCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhc-CCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence 45899999999999999999999997 999999999986 7889999999999999999999 99999999999999998
Q ss_pred CCCCCC
Q 017897 352 TPVRPR 357 (364)
Q Consensus 352 ~~~~~~ 357 (364)
++..+.
T Consensus 85 ~~~~~~ 90 (116)
T 2fy1_A 85 KPSFQS 90 (116)
T ss_dssp CSSCSS
T ss_pred CCCCCC
Confidence 765443
No 106
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.71 E-value=5.9e-17 Score=129.08 Aligned_cols=84 Identities=23% Similarity=0.263 Sum_probs=77.1
Q ss_pred ccCceEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccC--CCCeeEEEEEecCHHHHHHHHh-cCCCeeCCeeeEEe
Q 017897 272 EMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVS 348 (364)
Q Consensus 272 ~~~~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~--~~~kg~afV~F~~~e~A~~Al~-lng~~~~g~~l~V~ 348 (364)
....++|||+|||..+++++|+++|++| |.|..|.++++. +.++|||||+|.+.++|.+|+. |||..++|+.|+|.
T Consensus 23 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~-G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 101 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQEDEIQEKFCDY-GEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVD 101 (110)
T ss_dssp BTTBEEEEEESCCTTCCHHHHHHHHGGG-SCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc-CCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 4456899999999999999999999997 999999999875 6789999999999999999999 99999999999999
Q ss_pred ecCCCCCC
Q 017897 349 PSKTPVRP 356 (364)
Q Consensus 349 ~ak~~~~~ 356 (364)
|++++..+
T Consensus 102 ~a~~~~~~ 109 (110)
T 1oo0_B 102 WCFVKGPK 109 (110)
T ss_dssp ESEESSCC
T ss_pred EcccCCCC
Confidence 99876443
No 107
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.71 E-value=6.1e-17 Score=123.73 Aligned_cols=78 Identities=32% Similarity=0.590 Sum_probs=73.1
Q ss_pred CcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCC--CCCceEEEEEeCCHHHHHHHHHccccccCCeeEEEeeCCCC
Q 017897 178 RRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP--NSVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSKTA 255 (364)
Q Consensus 178 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~--~~~rG~aFV~F~~~~~A~~al~l~g~~l~g~~i~V~~a~~~ 255 (364)
.++|||+|||+++++++|+++|++||.|.+++++.++ +.++|||||+|.+.++|.+|+.+++..+.|++|.|.++++.
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~g~~~~g~~l~V~~a~~~ 85 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKRTN 85 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHGGGTTCEETTEECEEEETTTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHhcCCCEECCcEEEEEEccCC
Confidence 5899999999999999999999999999999999986 45799999999999999999999999999999999998653
No 108
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=3.1e-17 Score=129.32 Aligned_cols=75 Identities=24% Similarity=0.309 Sum_probs=69.1
Q ss_pred CCCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-cc--ccccCCeeEEEeeC
Q 017897 176 VIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LA--GTMLGFYPVRVLPS 252 (364)
Q Consensus 176 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~~~~rG~aFV~F~~~~~A~~al~-l~--g~~l~g~~i~V~~a 252 (364)
...++|||+|||+++|+++|+++|++||.|.+|+|+++ ||||||+|.+.++|.+|++ ++ +..+.|++|.|.++
T Consensus 14 ~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~----kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A 89 (105)
T 1sjq_A 14 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG----KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFS 89 (105)
T ss_dssp CCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT----TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC----CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEc
Confidence 45789999999999999999999999999999999986 5899999999999999998 76 47899999999998
Q ss_pred CC
Q 017897 253 KT 254 (364)
Q Consensus 253 ~~ 254 (364)
+.
T Consensus 90 ~~ 91 (105)
T 1sjq_A 90 NH 91 (105)
T ss_dssp SS
T ss_pred CC
Confidence 64
No 109
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=7.2e-17 Score=127.77 Aligned_cols=85 Identities=21% Similarity=0.291 Sum_probs=77.8
Q ss_pred ccCceEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEecc---CCCCeeEEEEEecCHHHHHHHHh-c-CCCeeCCeeeE
Q 017897 272 EMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGD---YQHSTRIAFVEFAMAESAIAALN-C-SGAVLGSLPIR 346 (364)
Q Consensus 272 ~~~~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d---~~~~kg~afV~F~~~e~A~~Al~-l-ng~~~~g~~l~ 346 (364)
....++|||+|||..+++++|+++|++| |.|..|.|+++ .+.++|||||+|.+.++|.+|+. | |+..|.|+.|+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~-G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~ 90 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTF-GELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLV 90 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTT-SCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHcc-CCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEE
Confidence 4456899999999999999999999997 99999999988 47889999999999999999999 9 99999999999
Q ss_pred EeecCCCCCCC
Q 017897 347 VSPSKTPVRPR 357 (364)
Q Consensus 347 V~~ak~~~~~~ 357 (364)
|.|+++.....
T Consensus 91 v~~a~~~~~~~ 101 (107)
T 2cph_A 91 LEWADSEVTVQ 101 (107)
T ss_dssp EEECCCCCCCC
T ss_pred EEeCCCCCCCC
Confidence 99999875443
No 110
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=7e-17 Score=127.46 Aligned_cols=82 Identities=33% Similarity=0.434 Sum_probs=75.3
Q ss_pred CCCCCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCC--CCCceEEEEEeCCHHHHHHHHH-ccccccCCeeEEEe
Q 017897 174 DEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP--NSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVL 250 (364)
Q Consensus 174 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~--~~~rG~aFV~F~~~~~A~~al~-l~g~~l~g~~i~V~ 250 (364)
.....++|||+|||+++++++|+++|++||.|.+|+++.++ +.++|||||+|.+.++|.+|++ |++..+.|++|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 90 (105)
T 1x5u_A 11 ERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVN 90 (105)
T ss_dssp CCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 34567899999999999999999999999999999999986 3479999999999999999998 99999999999999
Q ss_pred eCCCC
Q 017897 251 PSKTA 255 (364)
Q Consensus 251 ~a~~~ 255 (364)
++...
T Consensus 91 ~a~~~ 95 (105)
T 1x5u_A 91 KASAH 95 (105)
T ss_dssp ETTTT
T ss_pred ECCCC
Confidence 98653
No 111
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=4.5e-17 Score=128.19 Aligned_cols=82 Identities=27% Similarity=0.341 Sum_probs=75.3
Q ss_pred CCCCCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEeCCHHHHHHHHH-ccccccCCeeEEEe
Q 017897 174 DEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVL 250 (364)
Q Consensus 174 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~~--~~rG~aFV~F~~~~~A~~al~-l~g~~l~g~~i~V~ 250 (364)
.....++|||+|||.++++++|+++|+.||.|.++.++.++. .++|||||+|.+.++|++|++ |++..+.|++|.|.
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2dnm_A 9 DVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQ 88 (103)
T ss_dssp CCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 344578999999999999999999999999999999999874 468999999999999999998 99999999999999
Q ss_pred eCCCC
Q 017897 251 PSKTA 255 (364)
Q Consensus 251 ~a~~~ 255 (364)
+++..
T Consensus 89 ~a~~~ 93 (103)
T 2dnm_A 89 VARYG 93 (103)
T ss_dssp ECSSC
T ss_pred ECCcC
Confidence 98753
No 112
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.71 E-value=1.1e-16 Score=126.42 Aligned_cols=80 Identities=28% Similarity=0.390 Sum_probs=73.7
Q ss_pred CCCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCC-CCCceEEEEEeCCHHHHHHHHH-ccccccCC---eeEEEe
Q 017897 176 VIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP-NSVLRFAFVEFTDEEGARAALS-LAGTMLGF---YPVRVL 250 (364)
Q Consensus 176 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~-~~~rG~aFV~F~~~~~A~~al~-l~g~~l~g---~~i~V~ 250 (364)
...++|||+|||.++++++|+++|+.||.|.+|+|+.++ +.++|||||+|.+.++|.+|++ |++..+.| ++|.|.
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~ 92 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVK 92 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEE
Confidence 457899999999999999999999999999999999987 3469999999999999999998 99999988 999999
Q ss_pred eCCCC
Q 017897 251 PSKTA 255 (364)
Q Consensus 251 ~a~~~ 255 (364)
+++..
T Consensus 93 ~a~~~ 97 (105)
T 2dnh_A 93 FADTD 97 (105)
T ss_dssp ESCSS
T ss_pred ECccC
Confidence 98653
No 113
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=7.4e-17 Score=127.70 Aligned_cols=80 Identities=21% Similarity=0.294 Sum_probs=74.0
Q ss_pred CCCCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecC-C--CCCceEEEEEeCCHHHHHHHHH-c-cccccCCeeEEE
Q 017897 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGD-P--NSVLRFAFVEFTDEEGARAALS-L-AGTMLGFYPVRV 249 (364)
Q Consensus 175 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d-~--~~~rG~aFV~F~~~~~A~~al~-l-~g~~l~g~~i~V 249 (364)
....++|||+|||+.+++++|+++|+.||.|.+|+|+.+ + +.++|||||+|.+.++|.+|++ | ++..+.|++|.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v 91 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVL 91 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEE
Confidence 445789999999999999999999999999999999988 3 4579999999999999999998 8 999999999999
Q ss_pred eeCCC
Q 017897 250 LPSKT 254 (364)
Q Consensus 250 ~~a~~ 254 (364)
.++..
T Consensus 92 ~~a~~ 96 (107)
T 2cph_A 92 EWADS 96 (107)
T ss_dssp EECCC
T ss_pred EeCCC
Confidence 99865
No 114
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=1.6e-16 Score=127.38 Aligned_cols=82 Identities=27% Similarity=0.365 Sum_probs=75.4
Q ss_pred cCceEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccC-CCCeeEEEEEecCHHHHHHHHh-cCCCeeCCeeeEEeec
Q 017897 273 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY-QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSPS 350 (364)
Q Consensus 273 ~~~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~-~~~kg~afV~F~~~e~A~~Al~-lng~~~~g~~l~V~~a 350 (364)
...++|||+|||..+++++|+++|++| |.|.+|.|+++. +.++|||||+|.+.++|.+|+. ||+..|+|+.|+|.|+
T Consensus 13 ~~~~~l~V~nlp~~~~~~~l~~~f~~~-G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 91 (114)
T 2do0_A 13 RLGSTVFVANLDYKVGWKKLKEVFSMA-GVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMD 91 (114)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTT-SCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc-CCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEc
Confidence 346899999999999999999999997 999999999875 6789999999999999999999 9999999999999999
Q ss_pred CCCCC
Q 017897 351 KTPVR 355 (364)
Q Consensus 351 k~~~~ 355 (364)
+....
T Consensus 92 ~~~~~ 96 (114)
T 2do0_A 92 ERALP 96 (114)
T ss_dssp SCCCC
T ss_pred ccCCC
Confidence 76433
No 115
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.70 E-value=7e-17 Score=129.74 Aligned_cols=81 Identities=20% Similarity=0.402 Sum_probs=74.4
Q ss_pred CCCCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEeCCHHHHHHHHH-ccccccCCeeEEEee
Q 017897 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLP 251 (364)
Q Consensus 175 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~~--~~rG~aFV~F~~~~~A~~al~-l~g~~l~g~~i~V~~ 251 (364)
....++|||+|||.++++++|+++|+.||.|.+|+|+.++. .++|||||+|.+.++|++||+ |++..|.|++|+|.+
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 101 (115)
T 2cpz_A 22 GPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQL 101 (115)
T ss_dssp CSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 33568999999999999999999999999999999999873 469999999999999999997 999999999999999
Q ss_pred CCCC
Q 017897 252 SKTA 255 (364)
Q Consensus 252 a~~~ 255 (364)
+++.
T Consensus 102 a~~~ 105 (115)
T 2cpz_A 102 KRSK 105 (115)
T ss_dssp CCCS
T ss_pred cCCC
Confidence 8653
No 116
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=7e-17 Score=127.70 Aligned_cols=82 Identities=23% Similarity=0.261 Sum_probs=76.0
Q ss_pred ccCceEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccC--CCCeeEEEEEecCHHHHHHHHh-cCCCeeCCeeeEEe
Q 017897 272 EMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVS 348 (364)
Q Consensus 272 ~~~~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~--~~~kg~afV~F~~~e~A~~Al~-lng~~~~g~~l~V~ 348 (364)
....++|||+|||..+++++|+++|++| |.|..|.++++. +.++|||||+|.+.++|.+|+. |||..++|+.|+|.
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~-G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 98 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFAEY-GEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 98 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHGGG-SCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcc-CCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEE
Confidence 3456899999999999999999999997 999999999875 6789999999999999999999 99999999999999
Q ss_pred ecCCCC
Q 017897 349 PSKTPV 354 (364)
Q Consensus 349 ~ak~~~ 354 (364)
|++++.
T Consensus 99 ~a~~~~ 104 (106)
T 1p27_B 99 WCFVRG 104 (106)
T ss_dssp ESEESS
T ss_pred eecCCC
Confidence 998764
No 117
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.70 E-value=8.4e-17 Score=124.58 Aligned_cols=79 Identities=24% Similarity=0.362 Sum_probs=74.1
Q ss_pred cCceEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccC-CCCeeEEEEEecCHHHHHHHHh-cCCCeeCCeeeEEeec
Q 017897 273 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY-QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSPS 350 (364)
Q Consensus 273 ~~~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~-~~~kg~afV~F~~~e~A~~Al~-lng~~~~g~~l~V~~a 350 (364)
...++|||+|||..+++++|+++|++| |.|.+|.++++. +.++|||||+|.+.++|.+|+. ||+..++|+.|+|.|+
T Consensus 14 ~~~~~l~v~nlp~~~~~~~l~~~F~~~-G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 92 (95)
T 2ywk_A 14 EADRTVFVGNLEARVREEILYELFLQA-GPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGP 92 (95)
T ss_dssp TGGGEEEEECCCTTCCHHHHHHHHGGG-SCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhc-CCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEc
Confidence 345899999999999999999999997 999999999876 6789999999999999999999 9999999999999998
Q ss_pred CC
Q 017897 351 KT 352 (364)
Q Consensus 351 k~ 352 (364)
+.
T Consensus 93 ~~ 94 (95)
T 2ywk_A 93 SS 94 (95)
T ss_dssp CC
T ss_pred CC
Confidence 75
No 118
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=6e-17 Score=125.68 Aligned_cols=78 Identities=22% Similarity=0.429 Sum_probs=73.1
Q ss_pred CCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEE-EEecCC--CCCceEEEEEeCCHHHHHHHHH-ccccccCCeeEEEeeC
Q 017897 177 IRRTVYVSDIDQQVTEEQLATLFLTCGQVVDC-RICGDP--NSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPS 252 (364)
Q Consensus 177 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~-~i~~d~--~~~rG~aFV~F~~~~~A~~al~-l~g~~l~g~~i~V~~a 252 (364)
..++|||+|||+++++++|+++|++||.|.++ +++.++ +.++|||||+|.+.++|++|++ |++..+.|++|.|.++
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 83 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 46899999999999999999999999999999 999985 3479999999999999999999 9999999999999998
Q ss_pred CC
Q 017897 253 KT 254 (364)
Q Consensus 253 ~~ 254 (364)
..
T Consensus 84 ~~ 85 (96)
T 1x5t_A 84 FK 85 (96)
T ss_dssp CC
T ss_pred cc
Confidence 64
No 119
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.70 E-value=2.1e-17 Score=122.27 Aligned_cols=73 Identities=21% Similarity=0.247 Sum_probs=69.0
Q ss_pred EEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCC--CCCceEEEEEeCCHHHHHHHHHccccccCCeeEEEeeC
Q 017897 180 TVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP--NSVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPS 252 (364)
Q Consensus 180 ~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~--~~~rG~aFV~F~~~~~A~~al~l~g~~l~g~~i~V~~a 252 (364)
+|||+|||+++++++|+++|++||.|.+++++.++ +.++|||||+|.+.++|++|+++++..+.|++|.|+++
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHSSSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHCCCCEECCEEEEEEeC
Confidence 48999999999999999999999999999999986 45799999999999999999999999999999999885
No 120
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=5.7e-17 Score=127.60 Aligned_cols=82 Identities=22% Similarity=0.256 Sum_probs=76.1
Q ss_pred cCceEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccC--CCCeeEEEEEecCHHHHHHHHh-cCCCeeCCeeeEEee
Q 017897 273 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSP 349 (364)
Q Consensus 273 ~~~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~--~~~kg~afV~F~~~e~A~~Al~-lng~~~~g~~l~V~~ 349 (364)
...++|||+|||..+++++|+++|++| |.|..|.|+++. +.++|||||+|.+.++|.+|+. |||..++|+.|+|.|
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~-G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2dnm_A 11 DGMITLKVDNLTYRTSPDSLRRVFEKY-GRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQV 89 (103)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTT-SCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEE
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhc-CCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 356899999999999999999999997 999999999875 6789999999999999999999 999999999999999
Q ss_pred cCCCCC
Q 017897 350 SKTPVR 355 (364)
Q Consensus 350 ak~~~~ 355 (364)
+++...
T Consensus 90 a~~~~~ 95 (103)
T 2dnm_A 90 ARYGRR 95 (103)
T ss_dssp CSSCCS
T ss_pred CCcCCC
Confidence 997643
No 121
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=7.4e-17 Score=127.32 Aligned_cols=84 Identities=25% Similarity=0.269 Sum_probs=77.5
Q ss_pred cCceEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccC--CCCeeEEEEEecCHHHHHHHHh-cCCCeeCCeeeEEee
Q 017897 273 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSP 349 (364)
Q Consensus 273 ~~~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~--~~~kg~afV~F~~~e~A~~Al~-lng~~~~g~~l~V~~ 349 (364)
...++|||+|||..+++++|+++|++| |.|..|.++++. +.++|||||+|.+.++|.+|+. ||+..|+|+.|+|.|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~-G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 91 (105)
T 1x5u_A 13 NQDATVYVGGLDEKVSEPLLWELFLQA-GPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNK 91 (105)
T ss_dssp CTTTEEEEECCCTTCCHHHHHHHHHTT-SCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc-CCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 456899999999999999999999997 999999999875 6899999999999999999999 999999999999999
Q ss_pred cCCCCCCC
Q 017897 350 SKTPVRPR 357 (364)
Q Consensus 350 ak~~~~~~ 357 (364)
++++...+
T Consensus 92 a~~~~~~~ 99 (105)
T 1x5u_A 92 ASAHNKNL 99 (105)
T ss_dssp TTTTSCCC
T ss_pred CCCCCcCC
Confidence 98875443
No 122
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=6.2e-17 Score=127.56 Aligned_cols=85 Identities=25% Similarity=0.333 Sum_probs=77.9
Q ss_pred cCceEEEEeCCCCCCCHHHHHHHhhh-cCCceeEEEEeccC-CCCeeEEEEEecCHHHHHHHHh-cCCCe-eCCeeeEEe
Q 017897 273 MCSRTIYCTNIDKKVTQGDIKLFFES-VCGEVQRLRLLGDY-QHSTRIAFVEFAMAESAIAALN-CSGAV-LGSLPIRVS 348 (364)
Q Consensus 273 ~~~~~l~V~nLp~~~tee~L~~~F~~-~~G~I~~v~i~~d~-~~~kg~afV~F~~~e~A~~Al~-lng~~-~~g~~l~V~ 348 (364)
...++|||+|||..+++++|+++|++ | |.|.+|.|+++. +.++|||||+|.+.++|.+|+. ||+.. ++|+.|+|.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~-G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~ 85 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFFVKVY-PSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLS 85 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHHHHHC-TTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhC-CCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEE
Confidence 34689999999999999999999999 8 999999999885 6789999999999999999999 99999 999999999
Q ss_pred ecCCCCCCCC
Q 017897 349 PSKTPVRPRA 358 (364)
Q Consensus 349 ~ak~~~~~~~ 358 (364)
|++++..++.
T Consensus 86 ~a~~~~~~~~ 95 (104)
T 2dhg_A 86 VAIPKASRVK 95 (104)
T ss_dssp BCCCCCSCCC
T ss_pred EccCCCcCCC
Confidence 9987765544
No 123
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.70 E-value=1.3e-16 Score=128.57 Aligned_cols=80 Identities=19% Similarity=0.344 Sum_probs=74.5
Q ss_pred CCCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCC-CCCceEEEEEeCCHHHHHHHHH-ccccccCCeeEEEeeCC
Q 017897 176 VIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP-NSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSK 253 (364)
Q Consensus 176 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~-~~~rG~aFV~F~~~~~A~~al~-l~g~~l~g~~i~V~~a~ 253 (364)
...++|||+|||.++++++|+++|++||.|.+|.++.++ +.++|||||+|.+.++|++|++ |+|..+.|++|.|.+++
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 84 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAK 84 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence 456899999999999999999999999999999999987 4579999999999999999998 99999999999999987
Q ss_pred CC
Q 017897 254 TA 255 (364)
Q Consensus 254 ~~ 255 (364)
..
T Consensus 85 ~~ 86 (116)
T 2fy1_A 85 KP 86 (116)
T ss_dssp CS
T ss_pred CC
Confidence 54
No 124
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.70 E-value=8.5e-17 Score=128.01 Aligned_cols=82 Identities=22% Similarity=0.378 Sum_probs=76.0
Q ss_pred ccCceEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccC--CCCeeEEEEEecCHHHHHHHHh-cCCCeeCCeeeEEe
Q 017897 272 EMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVS 348 (364)
Q Consensus 272 ~~~~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~--~~~kg~afV~F~~~e~A~~Al~-lng~~~~g~~l~V~ 348 (364)
....++|||+|||..+++++|+++|++| |.|..|.++++. +.++|||||+|.+.++|.+|+. |||..++|+.|+|.
T Consensus 23 ~~~~~~l~V~nLp~~~te~~l~~~F~~~-G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~ 101 (108)
T 2jrs_A 23 SAGPMRLYVGSLHFNITEDMLRGIFEPF-GRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVG 101 (108)
T ss_dssp CSSCEEEEEECCCSSCCHHHHHHHHTTT-SCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc-CCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 4556899999999999999999999997 999999999874 6789999999999999999999 99999999999999
Q ss_pred ecCCCC
Q 017897 349 PSKTPV 354 (364)
Q Consensus 349 ~ak~~~ 354 (364)
|++++.
T Consensus 102 ~a~~k~ 107 (108)
T 2jrs_A 102 HVTERT 107 (108)
T ss_dssp CSCSSC
T ss_pred EcccCC
Confidence 998763
No 125
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.70 E-value=1.8e-17 Score=130.02 Aligned_cols=78 Identities=22% Similarity=0.275 Sum_probs=72.8
Q ss_pred CCCcEEEEeCCCC------CCcHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEeCCHHHHHHHHH-ccccccCC-e
Q 017897 176 VIRRTVYVSDIDQ------QVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALS-LAGTMLGF-Y 245 (364)
Q Consensus 176 ~~~~~lfV~nLp~------~~te~~L~~~F~~~G~i~~~~i~~d~~--~~rG~aFV~F~~~~~A~~al~-l~g~~l~g-~ 245 (364)
...++|||+|||. ++++++|+++|++||.|.+|+|+.|+. +++|||||+|.+.++|.+|++ |||..+.| +
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r 83 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKH 83 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSC
T ss_pred CcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCe
Confidence 3468999999999 999999999999999999999999885 469999999999999999998 99999999 9
Q ss_pred eEEEeeCC
Q 017897 246 PVRVLPSK 253 (364)
Q Consensus 246 ~i~V~~a~ 253 (364)
+|.|.++.
T Consensus 84 ~l~V~~a~ 91 (100)
T 3ns6_A 84 RLFLYTMK 91 (100)
T ss_dssp BCEEEESH
T ss_pred EEEEEECc
Confidence 99999974
No 126
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.70 E-value=3.6e-17 Score=123.68 Aligned_cols=72 Identities=18% Similarity=0.172 Sum_probs=67.9
Q ss_pred CCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-ccccccCCeeEEEeeC
Q 017897 177 IRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPS 252 (364)
Q Consensus 177 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~~~~rG~aFV~F~~~~~A~~al~-l~g~~l~g~~i~V~~a 252 (364)
....|||+||++.+|+++|+++|.+||+|.++++.. +||||||+|.++++|++|++ ||+..+.|++|+|+++
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~----~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A 78 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL----NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESP 78 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET----TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC----CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEEC
Confidence 356799999999999999999999999999999976 57999999999999999998 9999999999999986
No 127
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.70 E-value=1.9e-16 Score=124.65 Aligned_cols=83 Identities=28% Similarity=0.437 Sum_probs=76.3
Q ss_pred cCceEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccC--CCCeeEEEEEecCHHHHHHHHhcCCCeeCCeeeEEeec
Q 017897 273 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALNCSGAVLGSLPIRVSPS 350 (364)
Q Consensus 273 ~~~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~--~~~kg~afV~F~~~e~A~~Al~lng~~~~g~~l~V~~a 350 (364)
...++|||+|||..+++++|+++|++| | |..|.|+++. +.++|||||+|.+.++|.+|+.||+..|.|+.|+|.|+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a 90 (103)
T 2dng_A 13 EPPYTAYVGNLPFNTVQGDIDAIFKDL-S-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTYDGALLGDRSLRVDIA 90 (103)
T ss_dssp SSCEEEEEESCCTTCCHHHHHHHTTTS-C-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHGGGTTCEETTEECEEEEC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhC-C-ceEEEEeecCCCCccceEEEEEECCHHHHHHHHhhCCCeECCeEEEEEEe
Confidence 456899999999999999999999997 8 9999999885 68899999999999999999999999999999999999
Q ss_pred CCCCCCC
Q 017897 351 KTPVRPR 357 (364)
Q Consensus 351 k~~~~~~ 357 (364)
+++...+
T Consensus 91 ~~~~~~~ 97 (103)
T 2dng_A 91 EGRKQDK 97 (103)
T ss_dssp CCCCCCC
T ss_pred cCCCCCC
Confidence 9875444
No 128
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.70 E-value=6.9e-17 Score=125.50 Aligned_cols=77 Identities=32% Similarity=0.455 Sum_probs=72.5
Q ss_pred CcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCC--CCCceEEEEEeCCHHHHHHHHH-ccccccCCeeEEEeeCCC
Q 017897 178 RRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP--NSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSKT 254 (364)
Q Consensus 178 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~--~~~rG~aFV~F~~~~~A~~al~-l~g~~l~g~~i~V~~a~~ 254 (364)
.++|||+|||.++++++|+++|++||.|.+++++.++ +.++|||||+|.+.++|.+|++ |+|..+.|+.|.|.++..
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 5799999999999999999999999999999999986 3569999999999999999997 999999999999999864
No 129
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.70 E-value=9.7e-17 Score=125.39 Aligned_cols=80 Identities=24% Similarity=0.334 Sum_probs=73.5
Q ss_pred CCCCCcEEEEeCCCCCCcHHHHHHHhhcCCCeeE--------EEEecCCC--CCceEEEEEeCCHHHHHHHHH-cccccc
Q 017897 174 DEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVD--------CRICGDPN--SVLRFAFVEFTDEEGARAALS-LAGTML 242 (364)
Q Consensus 174 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~--------~~i~~d~~--~~rG~aFV~F~~~~~A~~al~-l~g~~l 242 (364)
.+...++|||+|||.++++++|+++|++||.|.+ ++++.++. .++|||||+|.+.++|.+|++ |+|..+
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~ 88 (99)
T 2la6_A 9 SHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF 88 (99)
T ss_dssp SCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEe
Confidence 3445789999999999999999999999999999 99999864 469999999999999999998 999999
Q ss_pred CCeeEEEeeCC
Q 017897 243 GFYPVRVLPSK 253 (364)
Q Consensus 243 ~g~~i~V~~a~ 253 (364)
.|++|+|.+++
T Consensus 89 ~g~~l~V~~A~ 99 (99)
T 2la6_A 89 SGNPIKVSFAT 99 (99)
T ss_dssp SSSBCEEEECC
T ss_pred CCcEEEEEecC
Confidence 99999999873
No 130
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.70 E-value=1.1e-16 Score=126.54 Aligned_cols=85 Identities=24% Similarity=0.371 Sum_probs=77.3
Q ss_pred ccCceEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccC--CCCeeEEEEEecCHHHHHHHHh-cCCCee---CCeee
Q 017897 272 EMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVL---GSLPI 345 (364)
Q Consensus 272 ~~~~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~--~~~kg~afV~F~~~e~A~~Al~-lng~~~---~g~~l 345 (364)
....++|||+|||..+++++|+++|++| |.|.+|.|+++. +.++|||||+|.+.++|.+|+. ||+..+ .|+.|
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~-G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l 88 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEF-GKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPI 88 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHH-SCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc-CCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceE
Confidence 3456899999999999999999999997 999999999875 6789999999999999999999 999988 89999
Q ss_pred EEeecCCCCCCC
Q 017897 346 RVSPSKTPVRPR 357 (364)
Q Consensus 346 ~V~~ak~~~~~~ 357 (364)
+|.|+++.....
T Consensus 89 ~v~~a~~~~~~~ 100 (106)
T 2dgp_A 89 QVKPADSESRGG 100 (106)
T ss_dssp EEEECCCCSCCC
T ss_pred EEEECCcccccC
Confidence 999999875443
No 131
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=6.8e-17 Score=126.86 Aligned_cols=80 Identities=30% Similarity=0.401 Sum_probs=74.0
Q ss_pred CCCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEeCCHHHHHHHHH-ccccccCCeeEEEeeC
Q 017897 176 VIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPS 252 (364)
Q Consensus 176 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~~--~~rG~aFV~F~~~~~A~~al~-l~g~~l~g~~i~V~~a 252 (364)
...++|||+|||.++++++|+++|+.||.|.+|+++.++. .++|||||+|.+.++|.+|++ |++..+.|++|.|.++
T Consensus 10 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 89 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 89 (102)
T ss_dssp CCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeC
Confidence 3568999999999999999999999999999999999864 479999999999999999997 9999999999999998
Q ss_pred CCC
Q 017897 253 KTA 255 (364)
Q Consensus 253 ~~~ 255 (364)
.+.
T Consensus 90 ~~~ 92 (102)
T 2cqb_A 90 KPM 92 (102)
T ss_dssp CCC
T ss_pred CCC
Confidence 653
No 132
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=7e-17 Score=126.79 Aligned_cols=81 Identities=20% Similarity=0.348 Sum_probs=74.4
Q ss_pred CCCCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEeCCHHHHHHHHH-ccccccCCeeEEEee
Q 017897 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLP 251 (364)
Q Consensus 175 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~~--~~rG~aFV~F~~~~~A~~al~-l~g~~l~g~~i~V~~ 251 (364)
....++|||+|||+++++++|+++|++||.|.+++++.++. .++|||||+|.+.++|.+|++ |++..+.|++|.|.+
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 88 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQ 88 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 34578999999999999999999999999999999999864 479999999999999999997 999999999999999
Q ss_pred CCCC
Q 017897 252 SKTA 255 (364)
Q Consensus 252 a~~~ 255 (364)
++..
T Consensus 89 a~~~ 92 (102)
T 1x5s_A 89 AGKS 92 (102)
T ss_dssp EECC
T ss_pred CCCC
Confidence 8643
No 133
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=4.9e-17 Score=130.01 Aligned_cols=79 Identities=15% Similarity=0.243 Sum_probs=73.3
Q ss_pred CCcEEEEeCCCCCCcHHHHH---HHhhcCCCeeEEEEecCCC-----CCceEEEEEeCCHHHHHHHHH-ccccccCCeeE
Q 017897 177 IRRTVYVSDIDQQVTEEQLA---TLFLTCGQVVDCRICGDPN-----SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPV 247 (364)
Q Consensus 177 ~~~~lfV~nLp~~~te~~L~---~~F~~~G~i~~~~i~~d~~-----~~rG~aFV~F~~~~~A~~al~-l~g~~l~g~~i 247 (364)
..++|||+|||+++++++|+ ++|++||.|.+++++.++. .++|||||+|.+.++|++||+ ||+..|.|++|
T Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l 93 (111)
T 2cpi_A 14 QKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTL 93 (111)
T ss_dssp CSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEEE
Confidence 46899999999999999999 9999999999999999875 357999999999999999998 99999999999
Q ss_pred EEeeCCCC
Q 017897 248 RVLPSKTA 255 (364)
Q Consensus 248 ~V~~a~~~ 255 (364)
.|.++.+.
T Consensus 94 ~V~~a~~k 101 (111)
T 2cpi_A 94 KASLGTTK 101 (111)
T ss_dssp EEESCCCC
T ss_pred EEEecccc
Confidence 99998653
No 134
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.69 E-value=7.6e-17 Score=122.86 Aligned_cols=79 Identities=20% Similarity=0.318 Sum_probs=73.3
Q ss_pred CceEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccC--C-CCeeEEEEEecCHHHHHHHHh-cCCCeeCCeeeEEee
Q 017897 274 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--Q-HSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSP 349 (364)
Q Consensus 274 ~~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~--~-~~kg~afV~F~~~e~A~~Al~-lng~~~~g~~l~V~~ 349 (364)
..++|||+|||..+++++|+++|++| |.|.++.++++. + .++|||||+|.+.++|.+|+. |||..++|+.|+|.+
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~-G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 81 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTY-GKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATA 81 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTT-SCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhC-CCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEE
Confidence 35799999999999999999999997 999999999876 2 388999999999999999999 999999999999999
Q ss_pred cCCC
Q 017897 350 SKTP 353 (364)
Q Consensus 350 ak~~ 353 (364)
+.++
T Consensus 82 a~~~ 85 (88)
T 4a8x_A 82 VLAP 85 (88)
T ss_dssp ECCC
T ss_pred CCCC
Confidence 9765
No 135
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.69 E-value=1.5e-16 Score=121.62 Aligned_cols=79 Identities=29% Similarity=0.492 Sum_probs=74.2
Q ss_pred CceEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccC--CCCeeEEEEEecCHHHHHHHHhcCCCeeCCeeeEEeecC
Q 017897 274 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALNCSGAVLGSLPIRVSPSK 351 (364)
Q Consensus 274 ~~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~--~~~kg~afV~F~~~e~A~~Al~lng~~~~g~~l~V~~ak 351 (364)
..++|||+|||..+++++|+++|++| |.|.++.++++. +.++|||||+|.+.++|.+|+.|||..+.|+.|+|.+++
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~-G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGC-GSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGG-CCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHGGGTTCEETTEECEEEETT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhC-CCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHhcCCCEECCcEEEEEEcc
Confidence 35799999999999999999999997 999999999874 688999999999999999999999999999999999998
Q ss_pred CC
Q 017897 352 TP 353 (364)
Q Consensus 352 ~~ 353 (364)
++
T Consensus 84 ~~ 85 (89)
T 3ucg_A 84 TN 85 (89)
T ss_dssp TT
T ss_pred CC
Confidence 75
No 136
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=8.3e-17 Score=124.37 Aligned_cols=79 Identities=23% Similarity=0.315 Sum_probs=73.6
Q ss_pred ccCceEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccC--CCCeeEEEEEecCHHHHHHHHh-cCCCeeCCeeeEEe
Q 017897 272 EMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVS 348 (364)
Q Consensus 272 ~~~~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~--~~~kg~afV~F~~~e~A~~Al~-lng~~~~g~~l~V~ 348 (364)
....++|||+|||..+++++|+++|++| |.|..|.++++. +.++|||||+|.+.++|.+|+. ||+..++|+.|+|.
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~-G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 91 (94)
T 2e5h_A 13 APSKSTVYVSNLPFSLTNNDLYRIFSKY-GKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKAS 91 (94)
T ss_dssp CCCTTSEEEESCCTTSCHHHHHHHTTTT-SCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhc-CCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 3456899999999999999999999997 999999999875 6789999999999999999998 99999999999999
Q ss_pred ecC
Q 017897 349 PSK 351 (364)
Q Consensus 349 ~ak 351 (364)
|++
T Consensus 92 ~ak 94 (94)
T 2e5h_A 92 IAI 94 (94)
T ss_dssp ECC
T ss_pred ecC
Confidence 985
No 137
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=7.6e-17 Score=125.86 Aligned_cols=80 Identities=20% Similarity=0.309 Sum_probs=74.0
Q ss_pred CCCcEEEEeCCCCCCcHHHHHHHhhcCCCee-EEEEecCCC--CCceEEEEEeCCHHHHHHHHH-ccccccCCee----E
Q 017897 176 VIRRTVYVSDIDQQVTEEQLATLFLTCGQVV-DCRICGDPN--SVLRFAFVEFTDEEGARAALS-LAGTMLGFYP----V 247 (364)
Q Consensus 176 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~-~~~i~~d~~--~~rG~aFV~F~~~~~A~~al~-l~g~~l~g~~----i 247 (364)
...++|||+|||+++++++|+++|++||.|. +++++.++. .++|||||+|.+.++|++|++ |++..+.|+. |
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l 86 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRF 86 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEEC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeE
Confidence 3578999999999999999999999999999 999999874 468999999999999999998 9999999999 9
Q ss_pred EEeeCCCC
Q 017897 248 RVLPSKTA 255 (364)
Q Consensus 248 ~V~~a~~~ 255 (364)
+|.|++..
T Consensus 87 ~v~~a~~~ 94 (99)
T 2div_A 87 KLNYATYS 94 (99)
T ss_dssp CEEETTCC
T ss_pred EEeecCCC
Confidence 99998643
No 138
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=9.5e-17 Score=125.32 Aligned_cols=82 Identities=16% Similarity=0.251 Sum_probs=75.9
Q ss_pred cCceEEEEeCCCCCCCHHHHHHHhhhcCCcee-EEEEeccC--CCCeeEEEEEecCHHHHHHHHh-cCCCeeCCee----
Q 017897 273 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQ-RLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLP---- 344 (364)
Q Consensus 273 ~~~~~l~V~nLp~~~tee~L~~~F~~~~G~I~-~v~i~~d~--~~~kg~afV~F~~~e~A~~Al~-lng~~~~g~~---- 344 (364)
...++|||+|||..+++++|+++|++| |.|. +|.+++++ +.++|||||+|.+.++|.+|+. |||..+.|+.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~ 85 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATM-GETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKR 85 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHT-TCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEE
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHh-CCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCccee
Confidence 346899999999999999999999997 9999 99999885 6889999999999999999999 9999999999
Q ss_pred eEEeecCCCCC
Q 017897 345 IRVSPSKTPVR 355 (364)
Q Consensus 345 l~V~~ak~~~~ 355 (364)
|+|.|+++...
T Consensus 86 l~v~~a~~~~~ 96 (99)
T 2div_A 86 FKLNYATYSGP 96 (99)
T ss_dssp CCEEETTCCSS
T ss_pred EEEeecCCCCC
Confidence 99999987643
No 139
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.2e-16 Score=126.34 Aligned_cols=79 Identities=23% Similarity=0.308 Sum_probs=73.4
Q ss_pred CCCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEeCCHHHHHHHHH-ccccccCCeeEEEeeC
Q 017897 176 VIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPS 252 (364)
Q Consensus 176 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~~--~~rG~aFV~F~~~~~A~~al~-l~g~~l~g~~i~V~~a 252 (364)
...++|||+|||.++++++|+++|+.||.|.+|+++.++. .++|||||+|.+.++|.+|++ |+|..+.|++|.|.++
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 100 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 100 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEee
Confidence 3468899999999999999999999999999999999874 469999999999999999998 9999999999999998
Q ss_pred CC
Q 017897 253 KT 254 (364)
Q Consensus 253 ~~ 254 (364)
..
T Consensus 101 ~~ 102 (106)
T 1p27_B 101 FV 102 (106)
T ss_dssp EE
T ss_pred cC
Confidence 64
No 140
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.9e-16 Score=124.81 Aligned_cols=84 Identities=24% Similarity=0.340 Sum_probs=76.9
Q ss_pred cCceEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccC---CCCeeEEEEEecCHHHHHHHHhcCCCeeCCeeeEEee
Q 017897 273 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY---QHSTRIAFVEFAMAESAIAALNCSGAVLGSLPIRVSP 349 (364)
Q Consensus 273 ~~~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~---~~~kg~afV~F~~~e~A~~Al~lng~~~~g~~l~V~~ 349 (364)
.+.++|||+|||..+++++|+++|++| | |..|.|+++. +.++|||||+|.+.++|.+||.||+..|.|+.|+|.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~-G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~ 90 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGL-N-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNKRIRVDV 90 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTS-C-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHHGGGTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHC-C-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHHhcCCCEeCCcEEEEEE
Confidence 356899999999999999999999997 9 9999999885 6789999999999999999999999999999999999
Q ss_pred cCCCCCCCC
Q 017897 350 SKTPVRPRA 358 (364)
Q Consensus 350 ak~~~~~~~ 358 (364)
++++..+++
T Consensus 91 a~~~~~~~~ 99 (104)
T 1wi8_A 91 ADQAQDKDS 99 (104)
T ss_dssp CCCCCCCCC
T ss_pred ccCCCCCCC
Confidence 998765543
No 141
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=8.5e-17 Score=129.84 Aligned_cols=83 Identities=25% Similarity=0.294 Sum_probs=74.3
Q ss_pred ccCceEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccCCCCeeEEEEEecCHHHHHHHHh-cC--CCeeCCeeeEEe
Q 017897 272 EMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CS--GAVLGSLPIRVS 348 (364)
Q Consensus 272 ~~~~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~e~A~~Al~-ln--g~~~~g~~l~V~ 348 (364)
..+.++|||+|||+.+++++|+++|++| |.|.+|.|+++ +|||||+|.+.++|.+|+. ++ +..|.|++|+|.
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~f-G~V~~v~i~~~----kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~ 102 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLPF-GKVTNLLMLKG----KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQ 102 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTTT-SCCCEEEEEGG----GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc-CCEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEE
Confidence 4567899999999999999999999997 99999999986 5799999999999999999 87 478999999999
Q ss_pred ecCCCCCCCCC
Q 017897 349 PSKTPVRPRAP 359 (364)
Q Consensus 349 ~ak~~~~~~~~ 359 (364)
|++++..++..
T Consensus 103 ~a~~k~~~~~~ 113 (119)
T 2ad9_A 103 FSNHKELKTDS 113 (119)
T ss_dssp ECSSSSCCCCC
T ss_pred EccCCCCCccc
Confidence 99987655543
No 142
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=1.5e-16 Score=126.73 Aligned_cols=80 Identities=23% Similarity=0.320 Sum_probs=74.1
Q ss_pred CCCCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEeCCHHHHHHHHH-cc------ccccCCe
Q 017897 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALS-LA------GTMLGFY 245 (364)
Q Consensus 175 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~~--~~rG~aFV~F~~~~~A~~al~-l~------g~~l~g~ 245 (364)
....++|||+|||+++++++|+++|+.||.|.+|+|+.++. .++|||||+|.+.++|.+|++ ++ +..+.|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~ 91 (111)
T 1x4h_A 12 VTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGR 91 (111)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCE
Confidence 44578999999999999999999999999999999999874 469999999999999999998 99 9999999
Q ss_pred eEEEeeCCC
Q 017897 246 PVRVLPSKT 254 (364)
Q Consensus 246 ~i~V~~a~~ 254 (364)
+|.|.++..
T Consensus 92 ~l~v~~a~~ 100 (111)
T 1x4h_A 92 QLKVDLAVT 100 (111)
T ss_dssp EEEEECCCC
T ss_pred EEEEEECCC
Confidence 999999864
No 143
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.69 E-value=3.1e-16 Score=130.21 Aligned_cols=86 Identities=19% Similarity=0.297 Sum_probs=78.8
Q ss_pred ccCceEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccC--CCCeeEEEEEecCHHHHHHHHh-cCCCeeCCeeeEEe
Q 017897 272 EMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVS 348 (364)
Q Consensus 272 ~~~~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~--~~~kg~afV~F~~~e~A~~Al~-lng~~~~g~~l~V~ 348 (364)
....++|||+|||..+++++|+++|++| |.|.+|.|+++. +.++|||||+|.+.++|.+|+. |||..|.|+.|+|.
T Consensus 39 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~-G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 117 (139)
T 1u6f_A 39 PDVLRNLMVNYIPTTVDEVQLRQLFERY-GPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVA 117 (139)
T ss_dssp TTTTSEEEEESCSTTCCHHHHHHHHHHH-SCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc-CCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 4567899999999999999999999997 999999999885 5789999999999999999999 99999999999999
Q ss_pred ecCCCCCCCC
Q 017897 349 PSKTPVRPRA 358 (364)
Q Consensus 349 ~ak~~~~~~~ 358 (364)
|+++...++.
T Consensus 118 ~a~~~~~~~~ 127 (139)
T 1u6f_A 118 LAASGHQRPG 127 (139)
T ss_dssp ESSCCCCCCC
T ss_pred ECCCCCCCCC
Confidence 9998755443
No 144
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.69 E-value=7.7e-17 Score=122.84 Aligned_cols=78 Identities=18% Similarity=0.286 Sum_probs=72.6
Q ss_pred CCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCC---CceEEEEEeCCHHHHHHHHH-ccccccCCeeEEEeeC
Q 017897 177 IRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS---VLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPS 252 (364)
Q Consensus 177 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~~~---~rG~aFV~F~~~~~A~~al~-l~g~~l~g~~i~V~~a 252 (364)
..++|||+|||.++++++|+++|++||.|.+++++.++.+ ++|||||+|.+.++|.+|++ |+|..+.|+.|.|.++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 4689999999999999999999999999999999998742 68999999999999999998 9999999999999998
Q ss_pred CC
Q 017897 253 KT 254 (364)
Q Consensus 253 ~~ 254 (364)
.+
T Consensus 83 ~~ 84 (88)
T 4a8x_A 83 LA 84 (88)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 145
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=2.1e-16 Score=125.77 Aligned_cols=84 Identities=20% Similarity=0.332 Sum_probs=76.7
Q ss_pred ccCceEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccCCCCeeEEEEEecCHHHHHHHHh-cCCCeeCCeeeEEeec
Q 017897 272 EMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSPS 350 (364)
Q Consensus 272 ~~~~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~e~A~~Al~-lng~~~~g~~l~V~~a 350 (364)
....++|||+|||..+++++|+++|++| |.|..|.++++ +|||||+|.+.++|.+|+. |||..++|+.|+|.|+
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~-G~i~~v~i~~~----~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 96 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPF-GQIMEIRVFPE----KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWG 96 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHH-SCEEEEEEETT----TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhc-CCeEEEEEeCC----CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEec
Confidence 4567899999999999999999999997 99999999987 5699999999999999998 9999999999999999
Q ss_pred CCCCCCCCCC
Q 017897 351 KTPVRPRAPR 360 (364)
Q Consensus 351 k~~~~~~~~r 360 (364)
++....+.+.
T Consensus 97 ~~~~~~~~~~ 106 (109)
T 1x4g_A 97 KESPDMTSGP 106 (109)
T ss_dssp CCCCSSCCCC
T ss_pred CCCCCCCCCC
Confidence 9886655543
No 146
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.69 E-value=1.6e-16 Score=126.45 Aligned_cols=82 Identities=24% Similarity=0.383 Sum_probs=75.1
Q ss_pred cCCCCCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEeCCHHHHHHHHH-ccccccCCeeEEE
Q 017897 173 QDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRV 249 (364)
Q Consensus 173 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~~--~~rG~aFV~F~~~~~A~~al~-l~g~~l~g~~i~V 249 (364)
+.....++|||+|||+.+++++|+++|++||.|.+++++.++. .++|||||+|.+.++|.+|++ ++|..+.|++|.|
T Consensus 21 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V 100 (108)
T 2jrs_A 21 KGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKV 100 (108)
T ss_dssp CSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 4455678999999999999999999999999999999999864 469999999999999999998 9999999999999
Q ss_pred eeCCC
Q 017897 250 LPSKT 254 (364)
Q Consensus 250 ~~a~~ 254 (364)
.+++.
T Consensus 101 ~~a~~ 105 (108)
T 2jrs_A 101 GHVTE 105 (108)
T ss_dssp ECSCS
T ss_pred EEccc
Confidence 99853
No 147
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=2.6e-16 Score=125.17 Aligned_cols=84 Identities=21% Similarity=0.266 Sum_probs=75.5
Q ss_pred ccCceEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccCCCCeeEEEEEecCHHHHHHHHh-cCCCeeCCeeeEEeec
Q 017897 272 EMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSPS 350 (364)
Q Consensus 272 ~~~~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~e~A~~Al~-lng~~~~g~~l~V~~a 350 (364)
....++|||+|||..+++++|+++|++| |.|..|.|..+ +.++|||||+|.+.++|.+|+. ||+..|.|+.|+|.|+
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~-G~v~~~~i~~~-~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 96 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKY-GAIRDIDLKNR-RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFP 96 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGG-SCEEEEEECCS-SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc-CCeEEEEEEEC-CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEc
Confidence 3456899999999999999999999997 99999999765 3578999999999999999998 9999999999999999
Q ss_pred CCCCCCC
Q 017897 351 KTPVRPR 357 (364)
Q Consensus 351 k~~~~~~ 357 (364)
++...++
T Consensus 97 ~~~~~~~ 103 (109)
T 1x4a_A 97 RSGRGTG 103 (109)
T ss_dssp CCCCCCC
T ss_pred ccCCCCC
Confidence 9874433
No 148
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=2.4e-16 Score=126.81 Aligned_cols=81 Identities=15% Similarity=0.218 Sum_probs=73.9
Q ss_pred CCCCCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEeCCHHHHHHHHH-ccccccCCeeEEEe
Q 017897 174 DEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVL 250 (364)
Q Consensus 174 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~~--~~rG~aFV~F~~~~~A~~al~-l~g~~l~g~~i~V~ 250 (364)
.+...++|||+|||+++++++|+++|++||.|.+|+|+.++. .++|||||+|.+.++|++||+ +++ .+.|++|.|.
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~ 91 (116)
T 2cqd_A 13 KDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVN 91 (116)
T ss_dssp CSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEE
Confidence 344678999999999999999999999999999999999874 579999999999999999998 887 8999999999
Q ss_pred eCCCC
Q 017897 251 PSKTA 255 (364)
Q Consensus 251 ~a~~~ 255 (364)
++...
T Consensus 92 ~a~~~ 96 (116)
T 2cqd_A 92 LAYLG 96 (116)
T ss_dssp ESTTT
T ss_pred EcccC
Confidence 98653
No 149
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=2.2e-16 Score=124.01 Aligned_cols=81 Identities=23% Similarity=0.269 Sum_probs=72.7
Q ss_pred ccCceEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccCCCCeeEEEEEecCHHHHHHHHh-c--CCCeeCCeeeEEe
Q 017897 272 EMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-C--SGAVLGSLPIRVS 348 (364)
Q Consensus 272 ~~~~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~e~A~~Al~-l--ng~~~~g~~l~V~ 348 (364)
..+.++|||+|||..+++++|+++|++| |.|.+|.++++ +|||||+|.+.++|.+|+. | ++..+.|++|+|.
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~f-G~v~~v~i~~~----kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~ 86 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTETEVIALGLPF-GKVTNILMLKG----KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQ 86 (101)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHTTTTT-SCEEEEEEETT----TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc-CCEEEEEEECC----CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEE
Confidence 3456899999999999999999999997 99999999886 5799999999999999998 6 5789999999999
Q ss_pred ecCCCCCCC
Q 017897 349 PSKTPVRPR 357 (364)
Q Consensus 349 ~ak~~~~~~ 357 (364)
|++....++
T Consensus 87 ~a~~~~~~~ 95 (101)
T 2cq1_A 87 YSNHKELKT 95 (101)
T ss_dssp ECSCSSCCC
T ss_pred EcCcccCcC
Confidence 999765554
No 150
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=3.1e-16 Score=125.63 Aligned_cols=80 Identities=28% Similarity=0.343 Sum_probs=73.9
Q ss_pred CCCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCCC-CCceEEEEEeCCHHHHHHHHH-ccccccCCeeEEEeeCC
Q 017897 176 VIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN-SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSK 253 (364)
Q Consensus 176 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~~-~~rG~aFV~F~~~~~A~~al~-l~g~~l~g~~i~V~~a~ 253 (364)
...++|||+|||.++++++|+++|++||.|.+|+|+.++. .++|||||+|.+.++|++|++ |++..+.|+.|.|.+++
T Consensus 13 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 92 (114)
T 2do0_A 13 RLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDE 92 (114)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEcc
Confidence 3468999999999999999999999999999999999874 469999999999999999998 99999999999999986
Q ss_pred CC
Q 017897 254 TA 255 (364)
Q Consensus 254 ~~ 255 (364)
..
T Consensus 93 ~~ 94 (114)
T 2do0_A 93 RA 94 (114)
T ss_dssp CC
T ss_pred cC
Confidence 53
No 151
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=6.4e-17 Score=127.63 Aligned_cols=79 Identities=20% Similarity=0.268 Sum_probs=73.6
Q ss_pred cCceEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccC-CCCeeEEEEEecCHHHHHHHHhcCCCeeCCeeeEEeecC
Q 017897 273 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY-QHSTRIAFVEFAMAESAIAALNCSGAVLGSLPIRVSPSK 351 (364)
Q Consensus 273 ~~~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~-~~~kg~afV~F~~~e~A~~Al~lng~~~~g~~l~V~~ak 351 (364)
...++|||+|||..+++++|+++|++| |.|.+|.|+++. +.++|||||+|.+.++|.+||.+++..++|+.|.|.|++
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~-G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~~~~~~~~gr~l~V~~~~ 87 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDK-GQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKD 87 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTS-SCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHTSSCCCCTTTTCEEEEHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhc-CCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHHcCCCEECCEEEEEEEch
Confidence 345899999999999999999999997 999999999876 789999999999999999999999999999999999975
Q ss_pred C
Q 017897 352 T 352 (364)
Q Consensus 352 ~ 352 (364)
.
T Consensus 88 ~ 88 (103)
T 1s79_A 88 D 88 (103)
T ss_dssp H
T ss_pred H
Confidence 4
No 152
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.6e-16 Score=127.21 Aligned_cols=85 Identities=21% Similarity=0.283 Sum_probs=77.1
Q ss_pred ccCceEEEEeCCCCCCCHHHHHHHhhhcCCcee--------EEEEeccC--CCCeeEEEEEecCHHHHHHHHh-cCCCee
Q 017897 272 EMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQ--------RLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVL 340 (364)
Q Consensus 272 ~~~~~~l~V~nLp~~~tee~L~~~F~~~~G~I~--------~v~i~~d~--~~~kg~afV~F~~~e~A~~Al~-lng~~~ 340 (364)
....++|||+|||..+++++|+++|++| |.|. .|.|+.+. +.++|||||+|.+.++|.+||. |||..|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~-G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 90 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLADFFKQC-GVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDF 90 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTTT-SCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEE
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhc-CCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCcc
Confidence 3456899999999999999999999997 9999 69998874 6889999999999999999999 999999
Q ss_pred CCeeeEEeecCCCCCCC
Q 017897 341 GSLPIRVSPSKTPVRPR 357 (364)
Q Consensus 341 ~g~~l~V~~ak~~~~~~ 357 (364)
.|+.|+|.|++++....
T Consensus 91 ~g~~l~V~~a~~~~~~~ 107 (113)
T 2cpe_A 91 QGSKLKVSLARKKPPMN 107 (113)
T ss_dssp TTEECEEECSSCCCCST
T ss_pred CCCEEEEEECCCCCCCC
Confidence 99999999999875443
No 153
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.69 E-value=2.7e-17 Score=161.94 Aligned_cols=158 Identities=14% Similarity=0.180 Sum_probs=106.5
Q ss_pred HHHHHhhcCCCeeEEEEec----CCCCCceEE-----EEEeCCHHHHHHHHH-ccccccCCeeEEEee------CCCCCC
Q 017897 194 QLATLFLTCGQVVDCRICG----DPNSVLRFA-----FVEFTDEEGARAALS-LAGTMLGFYPVRVLP------SKTAIA 257 (364)
Q Consensus 194 ~L~~~F~~~G~i~~~~i~~----d~~~~rG~a-----FV~F~~~~~A~~al~-l~g~~l~g~~i~V~~------a~~~~~ 257 (364)
.|..+|..+|+|..+..+. ++....+|+ |+.|.....+..++. ++......+....+. ......
T Consensus 8 ~L~~lF~p~pPl~~~~P~~~~p~~~~~~~~~~gia~~~~~f~~~~~~~~~~~~e~~~~~~~~~~~~k~~~~~~~~~~~~~ 87 (437)
T 3pgw_S 8 NLLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRDAPPPTRAETREERMERKRREKIERRQQEVETELK 87 (437)
T ss_pred cHHHhcCCCCCCcCCCCcccccccccCCCCcccHHHHHHhhcCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4889999999998873332 222223344 888877665554443 222111111000000 000000
Q ss_pred CCCCCCCCCCccccccCceEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccC--CCCeeEEEEEecCHHHHHHHHh-
Q 017897 258 PVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN- 334 (364)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~--~~~kg~afV~F~~~e~A~~Al~- 334 (364)
...+. ........+.++|||+|||..+++++|+.+|++| |.|..|.|+.+. +.++|||||+|.+.++|.+||.
T Consensus 88 ~~~p~---~~~~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~-G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~ 163 (437)
T 3pgw_S 88 MWDPH---NDPNAQGDAFKTLFVARVNYDTTESKLRREFEVY-GPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKH 163 (437)
T ss_pred hcCCc---ccccccCCCCCEEEEeCCCCCCCHHHHHHHHHHc-CCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHH
Confidence 00000 0111113456899999999999999999999997 999999999884 6789999999999999999998
Q ss_pred cCCCeeCCeeeEEeecCCCCC
Q 017897 335 CSGAVLGSLPIRVSPSKTPVR 355 (364)
Q Consensus 335 lng~~~~g~~l~V~~ak~~~~ 355 (364)
|||..|.|+.|.|.|+++...
T Consensus 164 lng~~i~gr~i~V~~a~~~~~ 184 (437)
T 3pgw_S 164 ADGKKIDGRRVLVDVERGRTV 184 (437)
T ss_pred cCCCEECCEEEEEEEeCCCCC
Confidence 999999999999999987543
No 154
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.69 E-value=2.4e-16 Score=124.09 Aligned_cols=78 Identities=22% Similarity=0.391 Sum_probs=72.7
Q ss_pred CCCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEeCCHHHHHHHHHccccccCCeeEEEeeCC
Q 017897 176 VIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSK 253 (364)
Q Consensus 176 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~~--~~rG~aFV~F~~~~~A~~al~l~g~~l~g~~i~V~~a~ 253 (364)
...++|||+|||+++++++|+++|+.|| |.+|+++.++. .++|||||+|.+.++|.+|++|++..|.|++|.|.++.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~ 91 (103)
T 2dng_A 13 EPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTYDGALLGDRSLRVDIAE 91 (103)
T ss_dssp SSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHGGGTTCEETTEECEEEECC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHHhhCCCeECCeEEEEEEec
Confidence 3568999999999999999999999997 99999999874 46999999999999999999999999999999999986
Q ss_pred C
Q 017897 254 T 254 (364)
Q Consensus 254 ~ 254 (364)
.
T Consensus 92 ~ 92 (103)
T 2dng_A 92 G 92 (103)
T ss_dssp C
T ss_pred C
Confidence 5
No 155
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.68 E-value=6e-17 Score=159.43 Aligned_cols=79 Identities=19% Similarity=0.256 Sum_probs=73.4
Q ss_pred CCCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCC--CCCceEEEEEeCCHHHHHHHHH-ccccccCCeeEEEeeC
Q 017897 176 VIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP--NSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPS 252 (364)
Q Consensus 176 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~--~~~rG~aFV~F~~~~~A~~al~-l~g~~l~g~~i~V~~a 252 (364)
...++|||+|||+.+|+++|.++|++||.|..|.|+.++ +.++|||||+|.+.++|.+||+ |||..|.|+.|.|.++
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 345799999999999999999999999999999999986 4479999999999999999997 9999999999999998
Q ss_pred CC
Q 017897 253 KT 254 (364)
Q Consensus 253 ~~ 254 (364)
..
T Consensus 180 ~~ 181 (437)
T 3pgw_S 180 RG 181 (437)
T ss_pred CC
Confidence 65
No 156
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.68 E-value=1.8e-16 Score=127.81 Aligned_cols=79 Identities=22% Similarity=0.306 Sum_probs=73.6
Q ss_pred ccCceEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccC--CCCeeEEEEEecCHHHHHHHHh-cCCCeeCCeeeEEe
Q 017897 272 EMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVS 348 (364)
Q Consensus 272 ~~~~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~--~~~kg~afV~F~~~e~A~~Al~-lng~~~~g~~l~V~ 348 (364)
....++|||+|||..+++++|+++|++| |.|.+|.++++. +.++|||||+|.+.++|.+|+. |||..++|+.|+|.
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~-G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 115 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPF-GNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQ 115 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTS-CEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc-CCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 4567999999999999999999999996 999999999875 6889999999999999999999 99999999999999
Q ss_pred ecC
Q 017897 349 PSK 351 (364)
Q Consensus 349 ~ak 351 (364)
|++
T Consensus 116 ~ak 118 (118)
T 2khc_A 116 LKK 118 (118)
T ss_dssp EC-
T ss_pred ecC
Confidence 975
No 157
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=2.6e-16 Score=126.54 Aligned_cols=88 Identities=13% Similarity=0.200 Sum_probs=79.4
Q ss_pred ccCceEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccC--CCCeeEEEEEecCHHHHHHHHhcCCCeeCCeeeEEee
Q 017897 272 EMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALNCSGAVLGSLPIRVSP 349 (364)
Q Consensus 272 ~~~~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~--~~~kg~afV~F~~~e~A~~Al~lng~~~~g~~l~V~~ 349 (364)
....++|||+|||..+++++|+++|++| |.|..|.|+++. +.++|||||+|.+.++|.+||..++..|+|+.|+|.|
T Consensus 24 ~~~~~~l~V~nLp~~~te~~l~~~F~~~-G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~ 102 (116)
T 1x4b_A 24 KEQFRKLFIGGLSFETTEESLRNYYEQW-GKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKR 102 (116)
T ss_dssp HHHHTEEEEECCTTCCCHHHHHHHHTSS-CCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTSCSEEETTEEEEEEC
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhc-CCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHhCCcEECCEEEEEEE
Confidence 3456899999999999999999999996 999999999985 6789999999999999999999999999999999999
Q ss_pred cCCCCCCCCCC
Q 017897 350 SKTPVRPRAPR 360 (364)
Q Consensus 350 ak~~~~~~~~r 360 (364)
++++.....++
T Consensus 103 a~~~~~~~~~~ 113 (116)
T 1x4b_A 103 AVAREESGSGP 113 (116)
T ss_dssp CSSCCCCCCSC
T ss_pred CCCCccCCCCC
Confidence 99876555443
No 158
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.68 E-value=1.5e-16 Score=129.55 Aligned_cols=85 Identities=31% Similarity=0.468 Sum_probs=77.6
Q ss_pred ccCceEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccC--CCCeeEEEEEecCHHHHHHHHhcCCCeeCCeeeEEee
Q 017897 272 EMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALNCSGAVLGSLPIRVSP 349 (364)
Q Consensus 272 ~~~~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~--~~~kg~afV~F~~~e~A~~Al~lng~~~~g~~l~V~~ 349 (364)
....++|||+|||..+++++|+++|++| |.|.+|.++++. +.++|||||+|.+.++|.+|+.|||..|+|+.|+|.|
T Consensus 33 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~-G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~ 111 (124)
T 2jwn_A 33 EIDKRSVYVGNVDYGSTAQDLEAHFSSC-GSINRITILCDKFSGHPKGYAYIEFAERNSVDAAVAMDETVFRGRTIKVLP 111 (124)
T ss_dssp HHHHTEEEEEEECTTCCHHHHHHHHHTT-SCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHHTTTTCEETTEECEEEE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhc-CCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCCeECCeEEEEEE
Confidence 4457899999999999999999999997 999999999874 7889999999999999999999999999999999999
Q ss_pred cCCCCCCC
Q 017897 350 SKTPVRPR 357 (364)
Q Consensus 350 ak~~~~~~ 357 (364)
+++.....
T Consensus 112 a~~~~~~~ 119 (124)
T 2jwn_A 112 KRTNMPGI 119 (124)
T ss_dssp SSCCCSSC
T ss_pred CCCCCCCC
Confidence 98764433
No 159
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.68 E-value=1.6e-16 Score=124.03 Aligned_cols=77 Identities=19% Similarity=0.236 Sum_probs=70.3
Q ss_pred ccCceEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccCCCCeeEEEEEecCHHHHHHHHh-cCCCe--eCCeeeEEe
Q 017897 272 EMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAV--LGSLPIRVS 348 (364)
Q Consensus 272 ~~~~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~e~A~~Al~-lng~~--~~g~~l~V~ 348 (364)
..+.++|||+|||+.+++++|+++|++| |.|.+|.++++ ||||||+|.+.++|.+|+. |++.. +.|++|+|.
T Consensus 18 ~~ps~~l~V~NLp~~~te~~L~~lF~~f-G~V~~v~i~~~----kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~ 92 (100)
T 3r27_A 18 TPASPVVHIRGLIDGVVEADLVEALQEF-GPISYVVVMPK----KRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVN 92 (100)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHGGG-SCEEEEEEETT----TTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhcc-CCEEEEEEEcC----CCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEE
Confidence 4567899999999999999999999997 99999999874 4699999999999999999 98874 889999999
Q ss_pred ecCCC
Q 017897 349 PSKTP 353 (364)
Q Consensus 349 ~ak~~ 353 (364)
|++.+
T Consensus 93 ~S~~k 97 (100)
T 3r27_A 93 YSTSQ 97 (100)
T ss_dssp ECSCS
T ss_pred ecccc
Confidence 99865
No 160
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.8e-16 Score=124.98 Aligned_cols=78 Identities=26% Similarity=0.384 Sum_probs=72.7
Q ss_pred CCCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCCC---CCceEEEEEeCCHHHHHHHHHccccccCCeeEEEeeC
Q 017897 176 VIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN---SVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPS 252 (364)
Q Consensus 176 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~~---~~rG~aFV~F~~~~~A~~al~l~g~~l~g~~i~V~~a 252 (364)
...++|||+|||+++++++|+++|+.|| |.+|+|+.++. .++|||||+|.+.++|.+||.|++..+.|++|.|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a 91 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNKRIRVDVA 91 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHHGGGTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHHhcCCCEeCCcEEEEEEc
Confidence 3468999999999999999999999999 99999999874 4699999999999999999999999999999999998
Q ss_pred CC
Q 017897 253 KT 254 (364)
Q Consensus 253 ~~ 254 (364)
..
T Consensus 92 ~~ 93 (104)
T 1wi8_A 92 DQ 93 (104)
T ss_dssp CC
T ss_pred cC
Confidence 64
No 161
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=3e-16 Score=124.82 Aligned_cols=80 Identities=23% Similarity=0.336 Sum_probs=72.9
Q ss_pred CCCCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-ccccccCCeeEEEeeCC
Q 017897 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSK 253 (364)
Q Consensus 175 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~~~~rG~aFV~F~~~~~A~~al~-l~g~~l~g~~i~V~~a~ 253 (364)
....++|||+|||+++++++|+++|++||.|.+|++..+. .++|||||+|.+.++|++|++ |++..|.|++|.|.+++
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~-~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 97 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRR-GGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPR 97 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSS-SSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcc
Confidence 3456899999999999999999999999999999997653 478999999999999999997 99999999999999986
Q ss_pred CC
Q 017897 254 TA 255 (364)
Q Consensus 254 ~~ 255 (364)
..
T Consensus 98 ~~ 99 (109)
T 1x4a_A 98 SG 99 (109)
T ss_dssp CC
T ss_pred cC
Confidence 53
No 162
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.68 E-value=5.1e-17 Score=122.21 Aligned_cols=71 Identities=17% Similarity=0.250 Sum_probs=66.4
Q ss_pred cEEEEeCCCCCC------cHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-ccccccCCe-eEEE
Q 017897 179 RTVYVSDIDQQV------TEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFY-PVRV 249 (364)
Q Consensus 179 ~~lfV~nLp~~~------te~~L~~~F~~~G~i~~~~i~~d~~~~rG~aFV~F~~~~~A~~al~-l~g~~l~g~-~i~V 249 (364)
++|||+|||..+ ++++|+++|++||.|.+++++.+.+.++|||||+|.+.++|.+|++ |||..+.|+ +|+|
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence 689999999999 7899999999999999999986667789999999999999999998 999999999 8876
No 163
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.68 E-value=1e-16 Score=126.75 Aligned_cols=79 Identities=16% Similarity=0.205 Sum_probs=72.6
Q ss_pred CCCCcEEEEeCCCCCC------cHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-ccccccCCe-e
Q 017897 175 EVIRRTVYVSDIDQQV------TEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFY-P 246 (364)
Q Consensus 175 ~~~~~~lfV~nLp~~~------te~~L~~~F~~~G~i~~~~i~~d~~~~rG~aFV~F~~~~~A~~al~-l~g~~l~g~-~ 246 (364)
....++|||+|||+.+ ++++|+++|++||.|.+|+++...+.++|||||+|.+.++|.+|++ |+|..+.|+ +
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~ 91 (105)
T 2nlw_A 12 DGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHT 91 (105)
T ss_dssp CSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCE
T ss_pred CCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCce
Confidence 3346899999999999 8899999999999999999986566789999999999999999998 999999998 9
Q ss_pred EEEeeCC
Q 017897 247 VRVLPSK 253 (364)
Q Consensus 247 i~V~~a~ 253 (364)
|.|.++.
T Consensus 92 l~V~~a~ 98 (105)
T 2nlw_A 92 FRVNLFT 98 (105)
T ss_dssp EEEECSC
T ss_pred EEEEEcc
Confidence 9999985
No 164
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.68 E-value=1.3e-16 Score=126.17 Aligned_cols=82 Identities=21% Similarity=0.310 Sum_probs=74.5
Q ss_pred CCCCCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEeCCHHHHHHHHH-cccccc---CCeeE
Q 017897 174 DEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALS-LAGTML---GFYPV 247 (364)
Q Consensus 174 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~~--~~rG~aFV~F~~~~~A~~al~-l~g~~l---~g~~i 247 (364)
.+...++|||+|||.++++++|+++|++||.|.+|+++.++. .++|||||+|.+.++|.+|++ |++..+ .|++|
T Consensus 9 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l 88 (106)
T 2dgp_A 9 KDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPI 88 (106)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceE
Confidence 344578999999999999999999999999999999999874 479999999999999999998 999887 89999
Q ss_pred EEeeCCCC
Q 017897 248 RVLPSKTA 255 (364)
Q Consensus 248 ~V~~a~~~ 255 (364)
.|.++...
T Consensus 89 ~v~~a~~~ 96 (106)
T 2dgp_A 89 QVKPADSE 96 (106)
T ss_dssp EEEECCCC
T ss_pred EEEECCcc
Confidence 99998653
No 165
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.68 E-value=2.1e-16 Score=120.34 Aligned_cols=77 Identities=19% Similarity=0.218 Sum_probs=71.8
Q ss_pred cCceEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccC--CCCeeEEEEEecCHHHHHHHHhcCCCeeCCeeeEEeec
Q 017897 273 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALNCSGAVLGSLPIRVSPS 350 (364)
Q Consensus 273 ~~~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~--~~~kg~afV~F~~~e~A~~Al~lng~~~~g~~l~V~~a 350 (364)
...++|||+|||..+++++|+++|++| |.|.+|.++++. +.++|||||+|.+.++|.+|+.+++..++|+.|+|.+|
T Consensus 9 ~~~~~l~V~nlp~~~t~~~l~~~F~~~-G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~v~~A 87 (87)
T 3s7r_A 9 EDAGKMFVGGLSWDTSKKDLKDYFTKF-GEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKKA 87 (87)
T ss_dssp SCTTEEEEECCCTTCCHHHHHHHHTTT-SCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHSSCEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhC-CCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHhCCCEECCEEEEEEeC
Confidence 456899999999999999999999997 999999999875 78899999999999999999998888999999999985
No 166
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=1.9e-16 Score=124.67 Aligned_cols=81 Identities=25% Similarity=0.379 Sum_probs=74.3
Q ss_pred CCCCcEEEEeCCCCCCcHHHHHHHhhc-CCCeeEEEEecCC-CCCceEEEEEeCCHHHHHHHHH-ccccc-cCCeeEEEe
Q 017897 175 EVIRRTVYVSDIDQQVTEEQLATLFLT-CGQVVDCRICGDP-NSVLRFAFVEFTDEEGARAALS-LAGTM-LGFYPVRVL 250 (364)
Q Consensus 175 ~~~~~~lfV~nLp~~~te~~L~~~F~~-~G~i~~~~i~~d~-~~~rG~aFV~F~~~~~A~~al~-l~g~~-l~g~~i~V~ 250 (364)
....++|||+|||+++++++|+++|+. ||.|.+|+|+.++ +.++|||||+|.+.++|.+|++ |++.. +.|++|.|.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~ 85 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLS 85 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEE
Confidence 345689999999999999999999999 9999999999987 3469999999999999999998 99999 999999999
Q ss_pred eCCCC
Q 017897 251 PSKTA 255 (364)
Q Consensus 251 ~a~~~ 255 (364)
++...
T Consensus 86 ~a~~~ 90 (104)
T 2dhg_A 86 VAIPK 90 (104)
T ss_dssp BCCCC
T ss_pred EccCC
Confidence 98643
No 167
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.68 E-value=1.4e-16 Score=120.34 Aligned_cols=72 Identities=15% Similarity=0.175 Sum_probs=68.1
Q ss_pred ceEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccCCCCeeEEEEEecCHHHHHHHHh-cCCCeeCCeeeEEeecC
Q 017897 275 SRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSPSK 351 (364)
Q Consensus 275 ~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~e~A~~Al~-lng~~~~g~~l~V~~ak 351 (364)
..-|||+||++.++|++|+++|.+| |+|.++++.. ++|||||+|.+.++|.+|+. ||+..++|++|+|.++.
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~-G~V~~~~l~~----~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQH-GPLVSFHPYL----NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHH-SCEEEEEEET----TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred cceEEEeCCCccCCHHHHHHHHHhh-CCEEEEEEcC----CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 4689999999999999999999997 9999999977 57899999999999999999 99999999999999984
No 168
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.68 E-value=1e-16 Score=128.03 Aligned_cols=79 Identities=16% Similarity=0.107 Sum_probs=70.7
Q ss_pred CceEEEEeCCCCCCCHHHHHHHhhhcCC-ceeEEEEeccCCCCeeEEEEEecCHHHHHHHHh-cCCCeeCCeeeEEeecC
Q 017897 274 CSRTIYCTNIDKKVTQGDIKLFFESVCG-EVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSPSK 351 (364)
Q Consensus 274 ~~~~l~V~nLp~~~tee~L~~~F~~~~G-~I~~v~i~~d~~~~kg~afV~F~~~e~A~~Al~-lng~~~~g~~l~V~~ak 351 (364)
..++|||+|||+.+++++|+++|++| | .|..+.+..+ .++|||||+|.+.++|.+|+. |||..|+|+.|+|.+++
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~-G~~v~~v~i~~~--~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~ 103 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLAREN-SLETTFSSVNTR--DFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDD 103 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHH-TCCCSEEECSSC--SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHh-CCeeEEEEEEcC--CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECC
Confidence 45899999999999999999999997 9 8999998643 478999999999999999999 99999999999999998
Q ss_pred CCCC
Q 017897 352 TPVR 355 (364)
Q Consensus 352 ~~~~ 355 (364)
.++.
T Consensus 104 ~~p~ 107 (111)
T 2jvr_A 104 NPPP 107 (111)
T ss_dssp C---
T ss_pred CCCC
Confidence 7643
No 169
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.68 E-value=1.5e-16 Score=126.70 Aligned_cols=79 Identities=20% Similarity=0.249 Sum_probs=73.4
Q ss_pred CCCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEeCCHHHHHHHHH-ccccccCCeeEEEeeC
Q 017897 176 VIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPS 252 (364)
Q Consensus 176 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~~--~~rG~aFV~F~~~~~A~~al~-l~g~~l~g~~i~V~~a 252 (364)
...++|||+|||.++++++|+++|+.||.|.+++++.++. .++|||||+|.+.++|.+|++ |+|..+.|++|.|.++
T Consensus 24 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 103 (110)
T 1oo0_B 24 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 103 (110)
T ss_dssp TTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEc
Confidence 4568999999999999999999999999999999998863 469999999999999999998 9999999999999998
Q ss_pred CC
Q 017897 253 KT 254 (364)
Q Consensus 253 ~~ 254 (364)
..
T Consensus 104 ~~ 105 (110)
T 1oo0_B 104 FV 105 (110)
T ss_dssp EE
T ss_pred cc
Confidence 54
No 170
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=1.2e-16 Score=127.64 Aligned_cols=83 Identities=12% Similarity=0.320 Sum_probs=75.8
Q ss_pred cCceEEEEeCCCCCCCHHHHH---HHhhhcCCceeEEEEeccCC-----CCeeEEEEEecCHHHHHHHHh-cCCCeeCCe
Q 017897 273 MCSRTIYCTNIDKKVTQGDIK---LFFESVCGEVQRLRLLGDYQ-----HSTRIAFVEFAMAESAIAALN-CSGAVLGSL 343 (364)
Q Consensus 273 ~~~~~l~V~nLp~~~tee~L~---~~F~~~~G~I~~v~i~~d~~-----~~kg~afV~F~~~e~A~~Al~-lng~~~~g~ 343 (364)
...++|||+|||..+++++|+ ++|++| |.|..|.|+++.. .++|||||+|.+.++|.+|+. |||..|+|+
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~-G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr 91 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKF-GKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGR 91 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTT-SCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhcc-CCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCE
Confidence 345899999999999999999 999997 9999999998863 567999999999999999999 999999999
Q ss_pred eeEEeecCCCCCC
Q 017897 344 PIRVSPSKTPVRP 356 (364)
Q Consensus 344 ~l~V~~ak~~~~~ 356 (364)
+|+|.|++++...
T Consensus 92 ~l~V~~a~~k~~~ 104 (111)
T 2cpi_A 92 TLKASLGTTKYCS 104 (111)
T ss_dssp EEEEESCCCCSCS
T ss_pred EEEEEeccccccc
Confidence 9999999987643
No 171
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=5.9e-17 Score=122.87 Aligned_cols=78 Identities=18% Similarity=0.290 Sum_probs=72.1
Q ss_pred CCCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCC--CCCceEEEEEeCCHHHHHHHHH-ccccccCCeeEEEeeC
Q 017897 176 VIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP--NSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPS 252 (364)
Q Consensus 176 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~--~~~rG~aFV~F~~~~~A~~al~-l~g~~l~g~~i~V~~a 252 (364)
...++|||+|||+++++++|+++|++||.|.+++++.++ +.++|||||+|.+.++|.+|++ |+|..+.|+.|++.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 356899999999999999999999999999999999986 4579999999999999999998 9999999999998875
Q ss_pred C
Q 017897 253 K 253 (364)
Q Consensus 253 ~ 253 (364)
.
T Consensus 83 ~ 83 (85)
T 1x4e_A 83 S 83 (85)
T ss_dssp C
T ss_pred C
Confidence 3
No 172
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.68 E-value=1.9e-16 Score=123.72 Aligned_cols=79 Identities=25% Similarity=0.359 Sum_probs=73.3
Q ss_pred ccCceEEEEeCCCCCCCHHHHHHHhhhcCCceeE--------EEEeccC--CCCeeEEEEEecCHHHHHHHHh-cCCCee
Q 017897 272 EMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQR--------LRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVL 340 (364)
Q Consensus 272 ~~~~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~--------v~i~~d~--~~~kg~afV~F~~~e~A~~Al~-lng~~~ 340 (364)
....++|||+|||..+++++|+++|++| |.|.. +.++++. +.++|||||+|.+.++|.+|+. |||..+
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~-G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~ 88 (99)
T 2la6_A 10 HSDNNTIFVQGLGENVTIESVADYFKQI-GIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF 88 (99)
T ss_dssp CCCCSEEEEECCCSSCCHHHHHHHHTTT-SCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHh-CCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEe
Confidence 3456899999999999999999999997 99999 9999874 6889999999999999999999 999999
Q ss_pred CCeeeEEeecC
Q 017897 341 GSLPIRVSPSK 351 (364)
Q Consensus 341 ~g~~l~V~~ak 351 (364)
+|+.|+|.+++
T Consensus 89 ~g~~l~V~~A~ 99 (99)
T 2la6_A 89 SGNPIKVSFAT 99 (99)
T ss_dssp SSSBCEEEECC
T ss_pred CCcEEEEEecC
Confidence 99999999975
No 173
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.68 E-value=9.5e-17 Score=129.50 Aligned_cols=79 Identities=24% Similarity=0.416 Sum_probs=72.7
Q ss_pred CCCCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEeCCHHHHHHHHH-ccccccCCeeEEEee
Q 017897 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLP 251 (364)
Q Consensus 175 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~~--~~rG~aFV~F~~~~~A~~al~-l~g~~l~g~~i~V~~ 251 (364)
....++|||+|||+++++++|+++|++||.|.+++++.++. .++|||||+|.+.++|++|++ |++..+.|++|+|.+
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 116 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQL 116 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 44568999999999999999999999999999999999863 579999999999999999998 999999999999998
Q ss_pred CC
Q 017897 252 SK 253 (364)
Q Consensus 252 a~ 253 (364)
++
T Consensus 117 ak 118 (118)
T 2khc_A 117 KK 118 (118)
T ss_dssp C-
T ss_pred cC
Confidence 63
No 174
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=6e-16 Score=121.67 Aligned_cols=87 Identities=17% Similarity=0.250 Sum_probs=77.6
Q ss_pred ccCceEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccC--CCCeeEEEEEecCHHHHHHHHhcCCCeeCCeeeEEee
Q 017897 272 EMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALNCSGAVLGSLPIRVSP 349 (364)
Q Consensus 272 ~~~~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~--~~~kg~afV~F~~~e~A~~Al~lng~~~~g~~l~V~~ 349 (364)
....++|||+|||..+++++|+++|++| |.|..|.|+++. +.++|||||+|.+.++|.+||. ++..++|+.|+|.|
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~-G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~g~~l~v~~ 89 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTF-GEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS-QRHMIDGRWCDCKL 89 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGG-SCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH-SCEEETTEEEEEEC
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhc-CCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH-cCCeeCCeEEEEEe
Confidence 3456899999999999999999999997 999999999885 7899999999999999999999 56799999999999
Q ss_pred cCCCCCCCCCC
Q 017897 350 SKTPVRPRAPR 360 (364)
Q Consensus 350 ak~~~~~~~~r 360 (364)
++++.....++
T Consensus 90 a~~~~~~~~~~ 100 (103)
T 2cqg_A 90 PNSKQSQDSGP 100 (103)
T ss_dssp CCTTCCCCCSS
T ss_pred cCCCCcCCCCC
Confidence 99876655443
No 175
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.68 E-value=3.4e-16 Score=123.93 Aligned_cols=79 Identities=22% Similarity=0.312 Sum_probs=74.1
Q ss_pred ccCceEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccC-CCCeeEEEEEecCHHHHHHHHh-cCCCeeCCeeeEEee
Q 017897 272 EMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY-QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSP 349 (364)
Q Consensus 272 ~~~~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~-~~~kg~afV~F~~~e~A~~Al~-lng~~~~g~~l~V~~ 349 (364)
..+.++|||+|||..+++++|+++|++| |.|.+|.|+++. +.++|||||+|.+.++|.+|+. |||..+.|+.|+|.|
T Consensus 26 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~-G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 104 (107)
T 3ulh_A 26 VETGGKLLVSNLDFGVSDADIQELFAEF-GTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQL 104 (107)
T ss_dssp CCCSEEEEEESCCTTCCHHHHHHHHHTT-SCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc-CCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 3457899999999999999999999996 999999999885 6789999999999999999999 999999999999999
Q ss_pred cC
Q 017897 350 SK 351 (364)
Q Consensus 350 ak 351 (364)
+.
T Consensus 105 a~ 106 (107)
T 3ulh_A 105 VT 106 (107)
T ss_dssp EC
T ss_pred eC
Confidence 86
No 176
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=1.4e-16 Score=125.84 Aligned_cols=82 Identities=26% Similarity=0.357 Sum_probs=74.8
Q ss_pred CCCCCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEeCCHHHHHHHHHccccccCCeeEEEee
Q 017897 174 DEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLP 251 (364)
Q Consensus 174 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~~--~~rG~aFV~F~~~~~A~~al~l~g~~l~g~~i~V~~ 251 (364)
.....++|||+|||+++++++|+++|++||.|.+|+++.++. .++|||||+|.+.++|.+||+.++..|.|++|.|.+
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~V~~ 91 (105)
T 2dh8_A 12 GADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKP 91 (105)
T ss_dssp CSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHHCSEEETTEEEBCCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHhCCCeECCEEEEEEE
Confidence 344678999999999999999999999999999999999864 469999999999999999998899999999999999
Q ss_pred CCCC
Q 017897 252 SKTA 255 (364)
Q Consensus 252 a~~~ 255 (364)
+.+.
T Consensus 92 a~~~ 95 (105)
T 2dh8_A 92 CTPR 95 (105)
T ss_dssp SCCS
T ss_pred ccCC
Confidence 8643
No 177
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=3.6e-16 Score=122.78 Aligned_cols=74 Identities=23% Similarity=0.286 Sum_probs=68.1
Q ss_pred CCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-cc--ccccCCeeEEEeeCC
Q 017897 177 IRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LA--GTMLGFYPVRVLPSK 253 (364)
Q Consensus 177 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~~~~rG~aFV~F~~~~~A~~al~-l~--g~~l~g~~i~V~~a~ 253 (364)
..++|||+|||+++++++|+++|++||.|.++.++.+ ||||||+|.+.++|.+|++ ++ +..+.|++|.|.+++
T Consensus 14 p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~----kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~ 89 (101)
T 2cq1_A 14 PSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG----KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSN 89 (101)
T ss_dssp CCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT----TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEECS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC----CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEcC
Confidence 4689999999999999999999999999999999876 5899999999999999997 64 667999999999986
Q ss_pred C
Q 017897 254 T 254 (364)
Q Consensus 254 ~ 254 (364)
.
T Consensus 90 ~ 90 (101)
T 2cq1_A 90 H 90 (101)
T ss_dssp C
T ss_pred c
Confidence 4
No 178
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.68 E-value=2.1e-16 Score=125.17 Aligned_cols=79 Identities=22% Similarity=0.252 Sum_probs=73.0
Q ss_pred CCCCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCC-CCCceEEEEEeCCHHHHHHHHH-ccccccCCeeEEEeeC
Q 017897 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP-NSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPS 252 (364)
Q Consensus 175 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~-~~~rG~aFV~F~~~~~A~~al~-l~g~~l~g~~i~V~~a 252 (364)
....++|||+|||+.+++++|+++|+.||.|.+++++.++ +.++|||||+|.+.++|.+|++ |++..+.|++|.|.++
T Consensus 26 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 105 (107)
T 3ulh_A 26 VETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLV 105 (107)
T ss_dssp CCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 3456899999999999999999999999999999999987 3469999999999999999998 9999999999999987
Q ss_pred C
Q 017897 253 K 253 (364)
Q Consensus 253 ~ 253 (364)
.
T Consensus 106 ~ 106 (107)
T 3ulh_A 106 T 106 (107)
T ss_dssp C
T ss_pred C
Confidence 4
No 179
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=4.5e-16 Score=122.42 Aligned_cols=82 Identities=21% Similarity=0.212 Sum_probs=73.4
Q ss_pred cCCCCCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEeCCHHHHHHHHHccccccCCeeEEEe
Q 017897 173 QDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVL 250 (364)
Q Consensus 173 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~~--~~rG~aFV~F~~~~~A~~al~l~g~~l~g~~i~V~ 250 (364)
+.....++|||+|||.++++++|+++|+.||.|.+|+|+.++. .++|||||+|.+.++|.+||+ +++.+.|++|.|.
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~g~~l~v~ 88 (103)
T 2cqg_A 10 RAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS-QRHMIDGRWCDCK 88 (103)
T ss_dssp CCCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH-SCEEETTEEEEEE
T ss_pred CccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH-cCCeeCCeEEEEE
Confidence 3344578999999999999999999999999999999999874 569999999999999999999 4678999999999
Q ss_pred eCCCC
Q 017897 251 PSKTA 255 (364)
Q Consensus 251 ~a~~~ 255 (364)
++...
T Consensus 89 ~a~~~ 93 (103)
T 2cqg_A 89 LPNSK 93 (103)
T ss_dssp CCCTT
T ss_pred ecCCC
Confidence 98653
No 180
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.67 E-value=1.9e-16 Score=130.14 Aligned_cols=81 Identities=27% Similarity=0.255 Sum_probs=74.9
Q ss_pred CCCCCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEeCCHHHHHHHHH-ccccccCCeeEEEe
Q 017897 174 DEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVL 250 (364)
Q Consensus 174 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~~--~~rG~aFV~F~~~~~A~~al~-l~g~~l~g~~i~V~ 250 (364)
.+...++|||+|||+++++++|+++|++||.|.+|+++.++. .++|||||+|.+.++|++||+ |++..|.|++|.|.
T Consensus 42 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~ 121 (129)
T 2kxn_B 42 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVD 121 (129)
T ss_dssp CCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEES
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 345578999999999999999999999999999999999874 579999999999999999998 99999999999999
Q ss_pred eCCC
Q 017897 251 PSKT 254 (364)
Q Consensus 251 ~a~~ 254 (364)
++..
T Consensus 122 ~a~~ 125 (129)
T 2kxn_B 122 FSIT 125 (129)
T ss_dssp CCSS
T ss_pred EecC
Confidence 9864
No 181
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.67 E-value=1.7e-16 Score=134.68 Aligned_cols=77 Identities=26% Similarity=0.347 Sum_probs=71.4
Q ss_pred CCcEEEEeCCCCCCcHHHHHHHhhcCC--CeeEEEEecCCC--CCceEEEEEeCCHHHHHHHHH-ccccccCCeeEEEee
Q 017897 177 IRRTVYVSDIDQQVTEEQLATLFLTCG--QVVDCRICGDPN--SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLP 251 (364)
Q Consensus 177 ~~~~lfV~nLp~~~te~~L~~~F~~~G--~i~~~~i~~d~~--~~rG~aFV~F~~~~~A~~al~-l~g~~l~g~~i~V~~ 251 (364)
..++|||+|||+++++++|+++|+.|| .|.+|+|+.|+. .++|||||+|.+.++|.+||+ |+|..|.|+.|.|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 458999999999999999999999999 999999999864 569999999999999999998 999999999999999
Q ss_pred CC
Q 017897 252 SK 253 (364)
Q Consensus 252 a~ 253 (364)
+.
T Consensus 134 a~ 135 (156)
T 3n9u_C 134 AT 135 (156)
T ss_dssp CC
T ss_pred cC
Confidence 84
No 182
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.67 E-value=1.1e-16 Score=132.52 Aligned_cols=80 Identities=16% Similarity=0.177 Sum_probs=73.7
Q ss_pred CCCCCcEEEEeCCCCCCcHHHHHHHhhcCCC---eeEEEEecCC-CCCceEEEEEeCCHHHHHHHHHccccccCCeeEEE
Q 017897 174 DEVIRRTVYVSDIDQQVTEEQLATLFLTCGQ---VVDCRICGDP-NSVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRV 249 (364)
Q Consensus 174 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~---i~~~~i~~d~-~~~rG~aFV~F~~~~~A~~al~l~g~~l~g~~i~V 249 (364)
.....++|||+|||+++|+++|+++|+.||. |.+|+|+.|+ ++++|||||+|.+.++|++||++++..|.|++|.|
T Consensus 40 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~~~g~~l~gr~i~V 119 (136)
T 2hgl_A 40 EGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALKKDRESMGHRYIEV 119 (136)
T ss_dssp SCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHTTTEEESSSSEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCEECCEEEEE
Confidence 3445789999999999999999999999999 8999999887 45799999999999999999999999999999999
Q ss_pred eeCC
Q 017897 250 LPSK 253 (364)
Q Consensus 250 ~~a~ 253 (364)
.++.
T Consensus 120 ~~a~ 123 (136)
T 2hgl_A 120 FKSH 123 (136)
T ss_dssp EECC
T ss_pred EECC
Confidence 9874
No 183
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=1.4e-16 Score=125.32 Aligned_cols=80 Identities=24% Similarity=0.305 Sum_probs=71.3
Q ss_pred cCceEEEEeCCCC-CCCHHHHHHHhhhcCCceeEEEEeccCCCCeeEEEEEecCHHHHHHHHh-cCC--CeeCCeeeEEe
Q 017897 273 MCSRTIYCTNIDK-KVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSG--AVLGSLPIRVS 348 (364)
Q Consensus 273 ~~~~~l~V~nLp~-~~tee~L~~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~e~A~~Al~-lng--~~~~g~~l~V~ 348 (364)
.+.++|||+|||+ .+++++|+++|++| |.|.+|.|++++ |||||+|.+.++|.+|+. ||+ ..|.|++|+|.
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~f-G~V~~v~i~~~k----g~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~ 87 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPF-GVISNHLILNKI----NEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVH 87 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGG-SCEEEEEECSSS----SCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhc-CCEEEEEEEcCC----CEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEE
Confidence 3578999999999 99999999999997 999999998864 699999999999999999 875 46999999999
Q ss_pred ecCCCCCCC
Q 017897 349 PSKTPVRPR 357 (364)
Q Consensus 349 ~ak~~~~~~ 357 (364)
|++...+-.
T Consensus 88 ~a~~~~~~~ 96 (102)
T 1x4d_A 88 LSQKYKRIK 96 (102)
T ss_dssp EECCCTTSS
T ss_pred ECCCCCCCC
Confidence 999754433
No 184
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=3.7e-16 Score=119.82 Aligned_cols=78 Identities=21% Similarity=0.307 Sum_probs=71.8
Q ss_pred cCceEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccCCCCeeEEEEEecCHHHHHHHHh-cCCCeeCCeeeEEeecC
Q 017897 273 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSPSK 351 (364)
Q Consensus 273 ~~~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~e~A~~Al~-lng~~~~g~~l~V~~ak 351 (364)
.+.++|||+|||..+++++|+++|++| |.|..|.++ +|||||+|.+.++|.+|+. ||+..+.|+.|+|.|++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~-G~i~~v~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 78 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQY-GKVLECDII------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASK 78 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTS-SCEEEEEEE------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSS
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhC-CCEEEEEEE------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECC
Confidence 456899999999999999999999997 999999997 3599999999999999999 99999999999999999
Q ss_pred CCCCCC
Q 017897 352 TPVRPR 357 (364)
Q Consensus 352 ~~~~~~ 357 (364)
++..++
T Consensus 79 ~~~~~~ 84 (90)
T 2dnq_A 79 NKSKAS 84 (90)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 875544
No 185
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=1.5e-16 Score=125.08 Aligned_cols=74 Identities=30% Similarity=0.319 Sum_probs=68.1
Q ss_pred CCcEEEEeCCCC-CCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-cccc--ccCCeeEEEeeC
Q 017897 177 IRRTVYVSDIDQ-QVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGT--MLGFYPVRVLPS 252 (364)
Q Consensus 177 ~~~~lfV~nLp~-~~te~~L~~~F~~~G~i~~~~i~~d~~~~rG~aFV~F~~~~~A~~al~-l~g~--~l~g~~i~V~~a 252 (364)
..++|||+|||+ ++++++|+++|++||.|.+|+|++++ |||||+|.+.++|.+|++ |++. .+.|++|.|.++
T Consensus 14 p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~k----g~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a 89 (102)
T 1x4d_A 14 TRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKI----NEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLS 89 (102)
T ss_dssp CCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSSS----SCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcCC----CEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEEC
Confidence 468999999999 99999999999999999999998764 799999999999999998 8865 499999999998
Q ss_pred CC
Q 017897 253 KT 254 (364)
Q Consensus 253 ~~ 254 (364)
+.
T Consensus 90 ~~ 91 (102)
T 1x4d_A 90 QK 91 (102)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 186
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.67 E-value=5.1e-16 Score=131.54 Aligned_cols=85 Identities=22% Similarity=0.239 Sum_probs=77.7
Q ss_pred ccCceEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccC--CCCeeEEEEEecCHHHHHHHHh-cCCCeeCCeeeEEe
Q 017897 272 EMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVS 348 (364)
Q Consensus 272 ~~~~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~--~~~kg~afV~F~~~e~A~~Al~-lng~~~~g~~l~V~ 348 (364)
....++|||+|||..+++++|+++|++| |.|..|.|+++. +.++|||||+|.+.++|.+||. ||+..|.|+.|+|.
T Consensus 36 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~-G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 114 (156)
T 1h2v_Z 36 LKKSCTLYVGNLSFYTTEEQIYELFSKS-GDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTD 114 (156)
T ss_dssp TTTCCEEEEESCCTTCCHHHHHHHHGGG-SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc-CCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 3456899999999999999999999997 999999999885 6789999999999999999999 99999999999999
Q ss_pred ecCCCCCCC
Q 017897 349 PSKTPVRPR 357 (364)
Q Consensus 349 ~ak~~~~~~ 357 (364)
|+++....+
T Consensus 115 ~a~~~~~~~ 123 (156)
T 1h2v_Z 115 WDAGFKEGR 123 (156)
T ss_dssp EESCCCTTC
T ss_pred ECCCCCCcC
Confidence 998765433
No 187
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1.1e-16 Score=125.97 Aligned_cols=80 Identities=23% Similarity=0.211 Sum_probs=72.1
Q ss_pred CCCCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCC-CCCceEEEEEeCCHHHHHHHHHccccccCCeeEEEeeCC
Q 017897 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP-NSVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSK 253 (364)
Q Consensus 175 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~-~~~rG~aFV~F~~~~~A~~al~l~g~~l~g~~i~V~~a~ 253 (364)
+...++|||+|||+++|+++|+++|+.||. ++|+|+.|+ ++++|||||+|.++++|++||++++..|.|+.|.|.++.
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~-~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~~~ 90 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVELFLNS 90 (102)
T ss_dssp CSSSCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEESSSSCEEEEEEEECSSSHHHHHHHTTSSCCSSSSCCEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCc-eEEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEECC
Confidence 345689999999999999999999999995 499999987 347999999999999999999999999999999999976
Q ss_pred CC
Q 017897 254 TA 255 (364)
Q Consensus 254 ~~ 255 (364)
..
T Consensus 91 ~~ 92 (102)
T 1wez_A 91 TA 92 (102)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 188
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=4.4e-16 Score=119.42 Aligned_cols=81 Identities=23% Similarity=0.329 Sum_probs=73.3
Q ss_pred ccCceEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccCCCCeeEEEEEecCHHHHHHHHh-cCCCeeCCeeeEEeec
Q 017897 272 EMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSPS 350 (364)
Q Consensus 272 ~~~~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~e~A~~Al~-lng~~~~g~~l~V~~a 350 (364)
....++|||+|||..+++++|+++|++| |.|..|.++++ ||||+|.+.++|.+|+. |||..++|+.|+|.|+
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~-G~v~~~~~~~~------~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 78 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERR-GRVIECDVVKD------YAFVHMEKEADAKAAIAQLNGKEVKGKRINVELS 78 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHH-SCEEEEEECSS------CEEEEESCHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcC-CCEEEEEEECC------EEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 3456899999999999999999999997 99999999865 99999999999999999 9999999999999999
Q ss_pred CCCCCCCCC
Q 017897 351 KTPVRPRAP 359 (364)
Q Consensus 351 k~~~~~~~~ 359 (364)
++...++.+
T Consensus 79 ~~~~~~~~~ 87 (90)
T 2dnp_A 79 TKGQKKSGP 87 (90)
T ss_dssp CCCCCCCSC
T ss_pred CCCCCCCCC
Confidence 987544433
No 189
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=2.3e-16 Score=126.19 Aligned_cols=82 Identities=24% Similarity=0.329 Sum_probs=74.6
Q ss_pred CCCCCcEEEEeCCCCCCcHHHHHHHhhcCCCee--------EEEEecCCC--CCceEEEEEeCCHHHHHHHHH-cccccc
Q 017897 174 DEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVV--------DCRICGDPN--SVLRFAFVEFTDEEGARAALS-LAGTML 242 (364)
Q Consensus 174 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~--------~~~i~~d~~--~~rG~aFV~F~~~~~A~~al~-l~g~~l 242 (364)
.....++|||+|||.++++++|+++|++||.|. .|+|+.++. .++|||||+|.+.++|.+||+ |++..|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 90 (113)
T 2cpe_A 11 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDF 90 (113)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEE
T ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCcc
Confidence 345678999999999999999999999999999 699999863 469999999999999999998 999999
Q ss_pred CCeeEEEeeCCCC
Q 017897 243 GFYPVRVLPSKTA 255 (364)
Q Consensus 243 ~g~~i~V~~a~~~ 255 (364)
.|++|.|.+++..
T Consensus 91 ~g~~l~V~~a~~~ 103 (113)
T 2cpe_A 91 QGSKLKVSLARKK 103 (113)
T ss_dssp TTEECEEECSSCC
T ss_pred CCCEEEEEECCCC
Confidence 9999999998653
No 190
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=3.7e-16 Score=122.47 Aligned_cols=83 Identities=25% Similarity=0.331 Sum_probs=73.4
Q ss_pred ccCceEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEecc-CCCCeeEEEEEecCHHHHHHHHh-cCCCeeCCeeeEEee
Q 017897 272 EMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGD-YQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSP 349 (364)
Q Consensus 272 ~~~~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d-~~~~kg~afV~F~~~e~A~~Al~-lng~~~~g~~l~V~~ 349 (364)
....++|||+|||..+++++|+++|++| |.| .++.+ .+.++|||||+|.+.++|.+|+. ||+..|.|+.|+|.|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~-g~v---~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 87 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKA-TFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLEL 87 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSC-SEE---ECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhC-CEE---EEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEE
Confidence 3456899999999999999999999996 987 45555 36789999999999999999999 999999999999999
Q ss_pred cCCCCCCCC
Q 017897 350 SKTPVRPRA 358 (364)
Q Consensus 350 ak~~~~~~~ 358 (364)
++++.+++.
T Consensus 88 a~~~~~~~~ 96 (101)
T 2fc9_A 88 QGPRGSPNS 96 (101)
T ss_dssp CSSCCCCCC
T ss_pred cCCCCCCCC
Confidence 998865544
No 191
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.67 E-value=3.1e-16 Score=124.97 Aligned_cols=82 Identities=22% Similarity=0.331 Sum_probs=70.8
Q ss_pred cCCCCCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCC--CCCceEEEEEeCCHHHHHHHHHccccccCCeeEEEe
Q 017897 173 QDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP--NSVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVL 250 (364)
Q Consensus 173 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~--~~~rG~aFV~F~~~~~A~~al~l~g~~l~g~~i~V~ 250 (364)
......++|||+|||.++++++|+++|+.||.|.+|+++.++ +.++|||||+|.+.++|.+|++..+..+.|+.|.|.
T Consensus 20 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~g~~l~V~ 99 (109)
T 2rs2_A 20 HMGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPK 99 (109)
T ss_dssp ------CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSCEEETTEEEEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCCCcCCCEEEEEE
Confidence 344567899999999999999999999999999999999987 457999999999999999999955689999999999
Q ss_pred eCCC
Q 017897 251 PSKT 254 (364)
Q Consensus 251 ~a~~ 254 (364)
++..
T Consensus 100 ~a~~ 103 (109)
T 2rs2_A 100 VAFP 103 (109)
T ss_dssp ECCC
T ss_pred EccC
Confidence 9864
No 192
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.67 E-value=4.3e-16 Score=126.85 Aligned_cols=86 Identities=20% Similarity=0.278 Sum_probs=78.7
Q ss_pred ccCceEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccC-CCCeeEEEEEecCHHHHHHHHh-cCCCeeCCeeeEEee
Q 017897 272 EMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY-QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSP 349 (364)
Q Consensus 272 ~~~~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~-~~~kg~afV~F~~~e~A~~Al~-lng~~~~g~~l~V~~ 349 (364)
....++|||+|||..+++++|+++|++| |.|.+|.++++. +.++|||||+|.+.++|.+|+. |||..++|+.|+|.|
T Consensus 32 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~-G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 110 (124)
T 2kt5_A 32 VETGAKLLVSNLDFGVSDADIQELFAEF-GTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 110 (124)
T ss_dssp CSSCEEEEEESCCSSCCHHHHHHHHHTT-SCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc-CCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 3456899999999999999999999996 999999999886 6789999999999999999999 999999999999999
Q ss_pred cCCCCCCCC
Q 017897 350 SKTPVRPRA 358 (364)
Q Consensus 350 ak~~~~~~~ 358 (364)
+.+......
T Consensus 111 a~~~~~~~~ 119 (124)
T 2kt5_A 111 VASQIDLEH 119 (124)
T ss_dssp ECCTTCCCC
T ss_pred eCCCCCCCC
Confidence 998755544
No 193
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.67 E-value=1.5e-16 Score=124.75 Aligned_cols=78 Identities=23% Similarity=0.352 Sum_probs=72.7
Q ss_pred eEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccCCCCeeEEEEEecCHHHHHHHHh-cCCCeeCCeeeEEeecCCCC
Q 017897 276 RTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSPSKTPV 354 (364)
Q Consensus 276 ~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~e~A~~Al~-lng~~~~g~~l~V~~ak~~~ 354 (364)
++|||+|||..+++++|+++|++| |.|.+|.++++ ++|||||+|.+.++|.+|+. |||..++|+.|+|.|++++.
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~-G~i~~v~i~~~---~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 76 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYY-GPLRTVWIARN---PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMP 76 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHH-CCCSEEEEESS---SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhc-CCeEEEEEeeC---CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCC
Confidence 489999999999999999999997 99999999988 77899999999999999999 99999999999999998876
Q ss_pred CCC
Q 017897 355 RPR 357 (364)
Q Consensus 355 ~~~ 357 (364)
+..
T Consensus 77 ~~~ 79 (101)
T 2hvz_A 77 RRS 79 (101)
T ss_dssp CSS
T ss_pred Ccc
Confidence 443
No 194
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=3e-16 Score=126.60 Aligned_cols=74 Identities=23% Similarity=0.304 Sum_probs=68.5
Q ss_pred CCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-ccc--cccCCeeEEEeeCC
Q 017897 177 IRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAG--TMLGFYPVRVLPSK 253 (364)
Q Consensus 177 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~~~~rG~aFV~F~~~~~A~~al~-l~g--~~l~g~~i~V~~a~ 253 (364)
..++|||+|||+++++++|+++|++||.|.+|+|+.+ ||||||+|.+.++|.+|++ +++ ..+.|++|.|.+++
T Consensus 30 ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~----kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a~ 105 (119)
T 2ad9_A 30 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG----KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSN 105 (119)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG----GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEECS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEcc
Confidence 4689999999999999999999999999999999986 5899999999999999998 774 57999999999986
Q ss_pred C
Q 017897 254 T 254 (364)
Q Consensus 254 ~ 254 (364)
.
T Consensus 106 ~ 106 (119)
T 2ad9_A 106 H 106 (119)
T ss_dssp S
T ss_pred C
Confidence 5
No 195
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=7e-16 Score=118.79 Aligned_cols=79 Identities=24% Similarity=0.328 Sum_probs=72.4
Q ss_pred ccCceEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccCCCCeeEEEEEecCHHHHHHHHh-cCCCeeCCeeeEEeec
Q 017897 272 EMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSPS 350 (364)
Q Consensus 272 ~~~~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~e~A~~Al~-lng~~~~g~~l~V~~a 350 (364)
....++|||+|||..+++++|+++|++| |.|..|.++++ ||||+|.+.++|.+|+. ||+..+.|+.|+|.|+
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~-G~v~~v~~~~~------~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 79 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEY-GPVIECDIVKD------YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLS 79 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTT-SCCCEEEECSS------EEEEEESCHHHHHHHHHHHTTEEETTEEEEEEES
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc-CCeEEEEEECC------EEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 3456899999999999999999999997 99999999764 99999999999999999 9999999999999999
Q ss_pred CCCCCCC
Q 017897 351 KTPVRPR 357 (364)
Q Consensus 351 k~~~~~~ 357 (364)
+++....
T Consensus 80 ~~~~~~~ 86 (92)
T 2dgt_A 80 TSRLRTA 86 (92)
T ss_dssp SCCCSCC
T ss_pred cCCCCCC
Confidence 9875544
No 196
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=1.8e-16 Score=125.10 Aligned_cols=85 Identities=19% Similarity=0.237 Sum_probs=77.4
Q ss_pred ccCceEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccC--CCCeeEEEEEecCHHHHHHHHhcCCCeeCCeeeEEee
Q 017897 272 EMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALNCSGAVLGSLPIRVSP 349 (364)
Q Consensus 272 ~~~~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~--~~~kg~afV~F~~~e~A~~Al~lng~~~~g~~l~V~~ 349 (364)
....++|||+|||..+++++|+++|++| |.|..|.|+++. +.++|||||+|.+.++|.+||..++..|+|+.|+|.|
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~-G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~V~~ 91 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQY-GEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKP 91 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTT-SCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHHCSEEETTEEEBCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc-CCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHhCCCeECCEEEEEEE
Confidence 3456899999999999999999999996 999999999984 6889999999999999999999899999999999999
Q ss_pred cCCCCCCC
Q 017897 350 SKTPVRPR 357 (364)
Q Consensus 350 ak~~~~~~ 357 (364)
++++...+
T Consensus 92 a~~~~~~~ 99 (105)
T 2dh8_A 92 CTPRGMQP 99 (105)
T ss_dssp SCCSSCCT
T ss_pred ccCCCCCC
Confidence 99875443
No 197
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.67 E-value=2.3e-16 Score=125.49 Aligned_cols=79 Identities=27% Similarity=0.495 Sum_probs=71.5
Q ss_pred cccCceEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccCCCCeeEEEEEecCHHHHHHHHh-cCCCeeCCeeeEEee
Q 017897 271 REMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSP 349 (364)
Q Consensus 271 ~~~~~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~e~A~~Al~-lng~~~~g~~l~V~~ 349 (364)
.....++|||+|||..+++++|+++|++| |.|..|.++ +|||||+|.+.++|.+|+. |||..++|+.|+|.|
T Consensus 27 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~-G~i~~v~i~------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 99 (108)
T 2jvo_A 27 GELSNTRLFVRPFPLDVQESELNEIFGPF-GPMKEVKIL------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVY 99 (108)
T ss_dssp -CCSCSEEEECSSCTTCCHHHHHHHHTTT-SCCCEEEEE------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEES
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhc-CCEEEEEEE------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 35667999999999999999999999997 999999997 4699999999999999999 999999999999999
Q ss_pred cCCCCCC
Q 017897 350 SKTPVRP 356 (364)
Q Consensus 350 ak~~~~~ 356 (364)
++++..+
T Consensus 100 a~~~~~r 106 (108)
T 2jvo_A 100 SKLPAKR 106 (108)
T ss_dssp CSCCC--
T ss_pred ecCCCCC
Confidence 9886543
No 198
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.67 E-value=1.6e-16 Score=129.64 Aligned_cols=85 Identities=24% Similarity=0.289 Sum_probs=77.5
Q ss_pred ccCceEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccC--CCCeeEEEEEecCHHHHHHHHh-cCCCeeCCeeeEEe
Q 017897 272 EMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVS 348 (364)
Q Consensus 272 ~~~~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~--~~~kg~afV~F~~~e~A~~Al~-lng~~~~g~~l~V~ 348 (364)
....++|||+|||..+++++|+++|++| |.|..|.|+.+. +.++|||||+|.+.++|.+|+. |||..|+|+.|.|.
T Consensus 19 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~-G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 97 (126)
T 3ex7_B 19 SVEGWILFVTGVHEEATEEDIHDKFAEY-GEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 97 (126)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHHHHHTT-SCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc-CCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 3456899999999999999999999997 999999999884 6789999999999999999999 99999999999999
Q ss_pred ecCCCCCCC
Q 017897 349 PSKTPVRPR 357 (364)
Q Consensus 349 ~ak~~~~~~ 357 (364)
|+++...++
T Consensus 98 ~a~~~~~~~ 106 (126)
T 3ex7_B 98 WCFVRGPPK 106 (126)
T ss_dssp ESEESSSCC
T ss_pred EecCCCCCC
Confidence 998765544
No 199
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.67 E-value=3.9e-17 Score=128.10 Aligned_cols=78 Identities=17% Similarity=0.175 Sum_probs=73.4
Q ss_pred ceEEEEeCCCC------CCCHHHHHHHhhhcCCceeEEEEeccC--CCCeeEEEEEecCHHHHHHHHh-cCCCeeCC-ee
Q 017897 275 SRTIYCTNIDK------KVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVLGS-LP 344 (364)
Q Consensus 275 ~~~l~V~nLp~------~~tee~L~~~F~~~~G~I~~v~i~~d~--~~~kg~afV~F~~~e~A~~Al~-lng~~~~g-~~ 344 (364)
.++|||+|||. .+++++|+++|++| |.|.+|.|+++. ++++|||||+|.+.++|.+|+. |||..+.| +.
T Consensus 6 ~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~-G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 6 DQYIVVNGAPVIPSAKVPVLKKALTSLFSKA-GKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp GGEEEEESCCCCBGGGHHHHHHHHHHHHHTT-SCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred CcEEEEeCCCcCChHHHHHHHHHHHHHHHhc-CCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 57999999999 99999999999997 999999999886 6899999999999999999999 99999999 99
Q ss_pred eEEeecCCC
Q 017897 345 IRVSPSKTP 353 (364)
Q Consensus 345 l~V~~ak~~ 353 (364)
|+|.++++.
T Consensus 85 l~V~~a~~~ 93 (100)
T 3ns6_A 85 LFLYTMKDV 93 (100)
T ss_dssp CEEEESHHH
T ss_pred EEEEECchh
Confidence 999998753
No 200
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=4.9e-16 Score=119.17 Aligned_cols=75 Identities=24% Similarity=0.415 Sum_probs=69.6
Q ss_pred CCCCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-ccccccCCeeEEEeeCC
Q 017897 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSK 253 (364)
Q Consensus 175 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~~~~rG~aFV~F~~~~~A~~al~-l~g~~l~g~~i~V~~a~ 253 (364)
....++|||+|||+++++++|+++|++||.|.+++++ +|||||+|.+.++|.+|++ |++..+.|++|.|.+++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 78 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASK 78 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSS
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECC
Confidence 3457899999999999999999999999999999998 4799999999999999997 99999999999999986
Q ss_pred CC
Q 017897 254 TA 255 (364)
Q Consensus 254 ~~ 255 (364)
..
T Consensus 79 ~~ 80 (90)
T 2dnq_A 79 NK 80 (90)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 201
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=1.9e-16 Score=123.29 Aligned_cols=81 Identities=21% Similarity=0.166 Sum_probs=73.5
Q ss_pred cCceEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccC--CCCeeEEEEEecCHHHHHHHHh-cCCCeeCCeeeEEee
Q 017897 273 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSP 349 (364)
Q Consensus 273 ~~~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~--~~~kg~afV~F~~~e~A~~Al~-lng~~~~g~~l~V~~ 349 (364)
...++|||+|||..+++++|+++|++| |.|..+.++.+. +.++|||||+|.+.++|.+|+. |||..|+|+.|+|.+
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~-G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 91 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGY-QVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVL 91 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTS-CCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHc-CCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 456899999999999999999999997 999888777664 6789999999999999999998 999999999999999
Q ss_pred cCCCC
Q 017897 350 SKTPV 354 (364)
Q Consensus 350 ak~~~ 354 (364)
++.+.
T Consensus 92 a~~~~ 96 (98)
T 2cqp_A 92 GSGPS 96 (98)
T ss_dssp SSCSS
T ss_pred cCCCC
Confidence 88653
No 202
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.67 E-value=4.8e-16 Score=126.57 Aligned_cols=82 Identities=22% Similarity=0.250 Sum_probs=75.0
Q ss_pred CCCCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCC-CCCceEEEEEeCCHHHHHHHHH-ccccccCCeeEEEeeC
Q 017897 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP-NSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPS 252 (364)
Q Consensus 175 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~-~~~rG~aFV~F~~~~~A~~al~-l~g~~l~g~~i~V~~a 252 (364)
....++|||+|||.++++++|+++|+.||.|.+|+++.++ +.++|||||+|.+.++|.+|++ +++..+.|++|.|.++
T Consensus 32 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 111 (124)
T 2kt5_A 32 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLV 111 (124)
T ss_dssp CSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEe
Confidence 3456899999999999999999999999999999999987 3479999999999999999998 9999999999999998
Q ss_pred CCCC
Q 017897 253 KTAI 256 (364)
Q Consensus 253 ~~~~ 256 (364)
....
T Consensus 112 ~~~~ 115 (124)
T 2kt5_A 112 ASQI 115 (124)
T ss_dssp CCTT
T ss_pred CCCC
Confidence 6543
No 203
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=4.7e-16 Score=119.46 Aligned_cols=79 Identities=23% Similarity=0.317 Sum_probs=72.9
Q ss_pred CCCCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCC-CCCceEEEEEeCCHHHHHHHHHccccccCCeeEEEeeCC
Q 017897 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP-NSVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSK 253 (364)
Q Consensus 175 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~-~~~rG~aFV~F~~~~~A~~al~l~g~~l~g~~i~V~~a~ 253 (364)
....++|||+|||+++++++|+++|+.| .|.+++++.+. +.++|||||+|.+.++|.+|+++++..+.|++|.|.++.
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~~g~~~~gr~i~v~~a~ 85 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALKCNREYMGGRYIEVFREK 85 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHHSCSEEETTEEEEEEEES
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHHhCCceeCCcEEEEEECC
Confidence 3457899999999999999999999999 99999999984 356999999999999999999999999999999999986
Q ss_pred C
Q 017897 254 T 254 (364)
Q Consensus 254 ~ 254 (364)
.
T Consensus 86 ~ 86 (91)
T 2dgw_A 86 S 86 (91)
T ss_dssp S
T ss_pred c
Confidence 4
No 204
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.66 E-value=2e-16 Score=129.96 Aligned_cols=81 Identities=23% Similarity=0.248 Sum_probs=75.8
Q ss_pred ccCceEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccC--CCCeeEEEEEecCHHHHHHHHh-cCCCeeCCeeeEEe
Q 017897 272 EMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVS 348 (364)
Q Consensus 272 ~~~~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~--~~~kg~afV~F~~~e~A~~Al~-lng~~~~g~~l~V~ 348 (364)
..+.++|||+|||..+++++|+++|++| |.|..|.++++. +.++|||||+|.+.++|.+||. |||..|+|+.|+|.
T Consensus 43 ~~~~~~l~V~nLp~~~te~~L~~~F~~~-G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~ 121 (129)
T 2kxn_B 43 PDPNCCLGVFGLSLYTTERDLREVFSKY-GPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVD 121 (129)
T ss_dssp CCCSSCBCEETCTTSCCHHHHHHHHTTT-SCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEES
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc-CCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 4456899999999999999999999997 999999999875 6789999999999999999999 99999999999999
Q ss_pred ecCCC
Q 017897 349 PSKTP 353 (364)
Q Consensus 349 ~ak~~ 353 (364)
|++++
T Consensus 122 ~a~~~ 126 (129)
T 2kxn_B 122 FSITK 126 (129)
T ss_dssp CCSSS
T ss_pred EecCC
Confidence 99875
No 205
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.66 E-value=3.7e-16 Score=124.48 Aligned_cols=82 Identities=20% Similarity=0.216 Sum_probs=72.5
Q ss_pred ccCceEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccC--CCCeeEEEEEecCHHHHHHHHhcCCCeeCCeeeEEee
Q 017897 272 EMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALNCSGAVLGSLPIRVSP 349 (364)
Q Consensus 272 ~~~~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~--~~~kg~afV~F~~~e~A~~Al~lng~~~~g~~l~V~~ 349 (364)
....++|||+|||..+++++|+++|++| |.|.+|.++++. +.++|||||+|.+.++|.+|+...+..++|+.|+|.+
T Consensus 22 ~~~~~~lfV~nLp~~~te~~L~~~F~~~-G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~g~~l~V~~ 100 (109)
T 2rs2_A 22 GSSGCKMFIGGLSWQTTQEGLREYFGQF-GEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKV 100 (109)
T ss_dssp ----CCEEEESCCTTCCHHHHHHHHTTT-SCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSCEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcc-CCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCCCcCCCEEEEEEE
Confidence 4457899999999999999999999997 999999999985 7889999999999999999999435999999999999
Q ss_pred cCCCC
Q 017897 350 SKTPV 354 (364)
Q Consensus 350 ak~~~ 354 (364)
+.++.
T Consensus 101 a~~~~ 105 (109)
T 2rs2_A 101 AFPRR 105 (109)
T ss_dssp CCCCC
T ss_pred ccCCC
Confidence 98754
No 206
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=3.6e-16 Score=118.41 Aligned_cols=75 Identities=19% Similarity=0.299 Sum_probs=69.6
Q ss_pred CCCCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-c-cccccCCeeEEEeeC
Q 017897 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-L-AGTMLGFYPVRVLPS 252 (364)
Q Consensus 175 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~~~~rG~aFV~F~~~~~A~~al~-l-~g~~l~g~~i~V~~a 252 (364)
....++|||+|||+++++++|+++|++||.|.+++++.+ +|||||+|.+.++|.+|++ | ++..+.|++|.|.|+
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~----kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~a 84 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR----QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWG 84 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG----GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEEC
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC----CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEec
Confidence 345689999999999999999999999999999999975 5899999999999999998 8 999999999999997
Q ss_pred C
Q 017897 253 K 253 (364)
Q Consensus 253 ~ 253 (364)
+
T Consensus 85 k 85 (85)
T 2ytc_A 85 R 85 (85)
T ss_dssp C
T ss_pred C
Confidence 3
No 207
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=8.7e-17 Score=119.43 Aligned_cols=73 Identities=25% Similarity=0.410 Sum_probs=68.4
Q ss_pred cEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCC--CCCceEEEEEeCCHHHHHHHHH-ccccccCCeeEEEeeC
Q 017897 179 RTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP--NSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPS 252 (364)
Q Consensus 179 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~--~~~rG~aFV~F~~~~~A~~al~-l~g~~l~g~~i~V~~a 252 (364)
++|||+|||+++++++|+++|++||.|.+++++.++ +.++|||||+|.+.++|.+|++ ++ ..+.|++|.|.++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 479999999999999999999999999999999987 4579999999999999999998 77 8999999999986
No 208
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.66 E-value=1.8e-16 Score=128.16 Aligned_cols=79 Identities=18% Similarity=0.186 Sum_probs=73.0
Q ss_pred CCCCcEEEEeCCCCCCcHHHHHHHhhcCCC---eeEEEEecCC-CCCceEEEEEeCCHHHHHHHHHccccccCCeeEEEe
Q 017897 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQ---VVDCRICGDP-NSVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVL 250 (364)
Q Consensus 175 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~---i~~~~i~~d~-~~~rG~aFV~F~~~~~A~~al~l~g~~l~g~~i~V~ 250 (364)
....++|||+|||+++|+++|+++|+.||. |.+|+|+.++ ++++|||||+|.++++|++||+++++.|.|+.|.|.
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V~ 93 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALKKDRESMGHRYIEVF 93 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGGGTTEEETTEEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEE
Confidence 345689999999999999999999999999 8999999887 457999999999999999999999999999999999
Q ss_pred eCC
Q 017897 251 PSK 253 (364)
Q Consensus 251 ~a~ 253 (364)
++.
T Consensus 94 ~a~ 96 (118)
T 2db1_A 94 KSH 96 (118)
T ss_dssp EEC
T ss_pred ECC
Confidence 874
No 209
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=4e-16 Score=124.09 Aligned_cols=77 Identities=25% Similarity=0.382 Sum_probs=71.7
Q ss_pred CCCCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-ccccccCCeeEEEeeCC
Q 017897 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSK 253 (364)
Q Consensus 175 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~~~~rG~aFV~F~~~~~A~~al~-l~g~~l~g~~i~V~~a~ 253 (364)
....++|||+|||.++++++|+++|++||.|.+|+++.+ +|||||+|.+.++|.+|++ |++..+.|++|.|.|++
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~----~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 97 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE----KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGK 97 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT----TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC----CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecC
Confidence 445789999999999999999999999999999999987 5899999999999999997 99999999999999986
Q ss_pred CC
Q 017897 254 TA 255 (364)
Q Consensus 254 ~~ 255 (364)
..
T Consensus 98 ~~ 99 (109)
T 1x4g_A 98 ES 99 (109)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 210
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.66 E-value=2.6e-16 Score=125.43 Aligned_cols=78 Identities=22% Similarity=0.370 Sum_probs=70.5
Q ss_pred cCceEEEEeCCCCC-CCHHHHHHHhhhcCCceeEEEEeccCCCCeeEEEEEecCHHHHHHHHh-cCCCeeCCeeeEEeec
Q 017897 273 MCSRTIYCTNIDKK-VTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSPS 350 (364)
Q Consensus 273 ~~~~~l~V~nLp~~-~tee~L~~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~e~A~~Al~-lng~~~~g~~l~V~~a 350 (364)
...++|||+|||.. +++++|+++|++| |.|..|.+ ++|||||+|.+.++|.+|+. ||+..++|+.|+|.|+
T Consensus 25 ~~~~~l~V~nl~~~~~t~~~l~~~F~~~-G~v~~v~i------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 97 (110)
T 1wf1_A 25 SINSRVFIGNLNTALVKKSDVETIFSKY-GRVAGCSV------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMA 97 (110)
T ss_dssp TCSSEEEECSCCCSSCCHHHHHHHHGGG-SCCSEEEE------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEES
T ss_pred CCCcEEEEeCCCcccCCHHHHHHHHHhC-CCeEEEEE------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 34589999999999 9999999999997 99999999 45799999999999999998 9999999999999999
Q ss_pred CCCCCCC
Q 017897 351 KTPVRPR 357 (364)
Q Consensus 351 k~~~~~~ 357 (364)
+++..++
T Consensus 98 ~~~~~~~ 104 (110)
T 1wf1_A 98 GEPKPDR 104 (110)
T ss_dssp CCCCSCC
T ss_pred CCCCCCC
Confidence 8654433
No 211
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=1.5e-16 Score=127.72 Aligned_cols=80 Identities=16% Similarity=0.103 Sum_probs=73.5
Q ss_pred CCCCcEEEEeCCCCCCcHHHHHHHhhcCCCe-eEEEEecCC-CCCceEEEEEeCCHHHHHHHHHccccccCCeeEEEeeC
Q 017897 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQV-VDCRICGDP-NSVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPS 252 (364)
Q Consensus 175 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i-~~~~i~~d~-~~~rG~aFV~F~~~~~A~~al~l~g~~l~g~~i~V~~a 252 (364)
+...++|||+|||+++|+++|+++|+.||.| .+|+|+.|+ +.++|||||+|.+.++|.+||++++..|.|++|.|.++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~v~~a 91 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLHRKKLNGREAFVHVV 91 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGGCSEEETTEEEEEEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHhCCCccCCeEEEEEEC
Confidence 3456899999999999999999999999999 899999988 34799999999999999999988999999999999998
Q ss_pred CC
Q 017897 253 KT 254 (364)
Q Consensus 253 ~~ 254 (364)
..
T Consensus 92 ~~ 93 (114)
T 2cpy_A 92 TL 93 (114)
T ss_dssp CH
T ss_pred CH
Confidence 54
No 212
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.66 E-value=1.6e-16 Score=126.97 Aligned_cols=78 Identities=14% Similarity=0.066 Sum_probs=70.7
Q ss_pred CCCCcEEEEeCCCCCCcHHHHHHHhhcCC-CeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-ccccccCCeeEEEeeC
Q 017897 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCG-QVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPS 252 (364)
Q Consensus 175 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G-~i~~~~i~~d~~~~rG~aFV~F~~~~~A~~al~-l~g~~l~g~~i~V~~a 252 (364)
+...++|||+|||+++++++|+++|++|| .|..+++..+ .++|||||+|.+.++|++||+ |||..+.|++|.|.++
T Consensus 25 p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~--~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a 102 (111)
T 2jvr_A 25 PAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR--DFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERD 102 (111)
T ss_dssp CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC--SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEES
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC--CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 33568999999999999999999999999 8999998643 368999999999999999998 9999999999999998
Q ss_pred CC
Q 017897 253 KT 254 (364)
Q Consensus 253 ~~ 254 (364)
..
T Consensus 103 ~~ 104 (111)
T 2jvr_A 103 DN 104 (111)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 213
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.66 E-value=3.3e-16 Score=127.47 Aligned_cols=79 Identities=28% Similarity=0.518 Sum_probs=73.5
Q ss_pred CCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCC--CCCceEEEEEeCCHHHHHHHHHccccccCCeeEEEeeCCC
Q 017897 177 IRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP--NSVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSKT 254 (364)
Q Consensus 177 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~--~~~rG~aFV~F~~~~~A~~al~l~g~~l~g~~i~V~~a~~ 254 (364)
..++|||+|||.++++++|+++|++||.|.+|+++.++ +.++|||||+|.+.++|.+|+++++..|.|+.|.|.+++.
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~~ 114 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAVAMDETVFRGRTIKVLPKRT 114 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHHTTTTCEETTEECEEEESSC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECCC
Confidence 45899999999999999999999999999999999985 4579999999999999999999999999999999999865
Q ss_pred C
Q 017897 255 A 255 (364)
Q Consensus 255 ~ 255 (364)
.
T Consensus 115 ~ 115 (124)
T 2jwn_A 115 N 115 (124)
T ss_dssp C
T ss_pred C
Confidence 3
No 214
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.66 E-value=4.6e-16 Score=121.41 Aligned_cols=74 Identities=24% Similarity=0.220 Sum_probs=68.1
Q ss_pred CCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-ccccc--cCCeeEEEeeCC
Q 017897 177 IRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTM--LGFYPVRVLPSK 253 (364)
Q Consensus 177 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~~~~rG~aFV~F~~~~~A~~al~-l~g~~--l~g~~i~V~~a~ 253 (364)
..++|||+|||.++|+++|+++|++||.|.+++++++ ||||||+|.+.++|.+|++ +++.. +.|++|.|.+++
T Consensus 20 ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~----kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S~ 95 (100)
T 3r27_A 20 ASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK----KRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYST 95 (100)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT----TTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEECS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC----CCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEecc
Confidence 4689999999999999999999999999999999864 5899999999999999998 88875 789999999986
Q ss_pred C
Q 017897 254 T 254 (364)
Q Consensus 254 ~ 254 (364)
.
T Consensus 96 ~ 96 (100)
T 3r27_A 96 S 96 (100)
T ss_dssp C
T ss_pred c
Confidence 4
No 215
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=4.9e-16 Score=122.74 Aligned_cols=75 Identities=19% Similarity=0.177 Sum_probs=68.1
Q ss_pred CCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-cccc--ccCCeeEEEeeCC
Q 017897 177 IRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGT--MLGFYPVRVLPSK 253 (364)
Q Consensus 177 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~~~~rG~aFV~F~~~~~A~~al~-l~g~--~l~g~~i~V~~a~ 253 (364)
..++|||+|||+++++++|+++|++||.|.++.++++ ||||||+|.+.++|.+|++ |++. .+.|++|.|.+++
T Consensus 14 p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~----kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a~ 89 (104)
T 1wex_A 14 VSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF----KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYST 89 (104)
T ss_dssp CCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT----TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEECS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC----CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcc
Confidence 4689999999999999999999999999999999875 5899999999999999998 8764 4899999999986
Q ss_pred CC
Q 017897 254 TA 255 (364)
Q Consensus 254 ~~ 255 (364)
..
T Consensus 90 ~~ 91 (104)
T 1wex_A 90 SK 91 (104)
T ss_dssp SS
T ss_pred Cc
Confidence 53
No 216
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.66 E-value=2.4e-16 Score=124.65 Aligned_cols=79 Identities=18% Similarity=0.210 Sum_probs=73.4
Q ss_pred CceEEEEeCCCCCC------CHHHHHHHhhhcCCceeEEEEeccCCCCeeEEEEEecCHHHHHHHHh-cCCCeeCCe-ee
Q 017897 274 CSRTIYCTNIDKKV------TQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSL-PI 345 (364)
Q Consensus 274 ~~~~l~V~nLp~~~------tee~L~~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~e~A~~Al~-lng~~~~g~-~l 345 (364)
..++|||+|||..+ ++++|+++|++| |.|.+|.|++..+.++|||||+|.+.++|.+|+. |||..|+|+ +|
T Consensus 14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~-G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l 92 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKF-GKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 92 (105)
T ss_dssp CCSEEEEESCCCCCTTTTTHHHHHHHHHHGGG-SCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCEE
T ss_pred CCCEEEEeCCCcchhhhhHHHHHHHHHHHhcC-CCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCceE
Confidence 45899999999999 789999999997 9999999987668899999999999999999999 999999998 99
Q ss_pred EEeecCCC
Q 017897 346 RVSPSKTP 353 (364)
Q Consensus 346 ~V~~ak~~ 353 (364)
+|.|+...
T Consensus 93 ~V~~a~~~ 100 (105)
T 2nlw_A 93 RVNLFTDF 100 (105)
T ss_dssp EEECSCCC
T ss_pred EEEEcchH
Confidence 99998754
No 217
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.66 E-value=6.1e-17 Score=124.15 Aligned_cols=81 Identities=22% Similarity=0.315 Sum_probs=70.2
Q ss_pred eEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccC--CCCeeEEEEEecCHHHHHHHHh-cCCCeeCCeeeEEeecCC
Q 017897 276 RTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSPSKT 352 (364)
Q Consensus 276 ~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~--~~~kg~afV~F~~~e~A~~Al~-lng~~~~g~~l~V~~ak~ 352 (364)
++|||+|||..+++++|+++|++| |.|.+|.++++. +.++|||||+|.+.+ |.+|+. |||..++|+.|+|.|+.+
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~-G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~ 79 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQF-GKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANP 79 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHH-TCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC--
T ss_pred cEEEECCCCCCCCHHHHHHHHHhc-CCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCC
Confidence 689999999999999999999997 999999999885 688999999999999 999999 999999999999999988
Q ss_pred CCCCCC
Q 017897 353 PVRPRA 358 (364)
Q Consensus 353 ~~~~~~ 358 (364)
+..+..
T Consensus 80 ~~~~~~ 85 (90)
T 2ki2_A 80 KKSLEH 85 (90)
T ss_dssp ------
T ss_pred CCCCCC
Confidence 755443
No 218
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=5e-16 Score=124.92 Aligned_cols=78 Identities=22% Similarity=0.348 Sum_probs=72.8
Q ss_pred CCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEeCCHHHHHHHHHccccccCCeeEEEeeCCC
Q 017897 177 IRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSKT 254 (364)
Q Consensus 177 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~~--~~rG~aFV~F~~~~~A~~al~l~g~~l~g~~i~V~~a~~ 254 (364)
..++|||+|||+++++++|+++|+.||.|..|+|+.++. .++|||||+|.+.++|.+||+.++..|.|+.|.|.++..
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~a~~ 105 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVA 105 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTSCSEEETTEEEEEECCSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHhCCcEECCEEEEEEECCC
Confidence 458999999999999999999999999999999999874 479999999999999999998899999999999999864
No 219
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=8e-16 Score=122.23 Aligned_cols=78 Identities=18% Similarity=0.176 Sum_probs=72.5
Q ss_pred CceEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccCCCCeeEEEEEecCHHHHHHHHh-cCCCeeCC-----eeeEE
Q 017897 274 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGS-----LPIRV 347 (364)
Q Consensus 274 ~~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~e~A~~Al~-lng~~~~g-----~~l~V 347 (364)
..++|||+|||..+++++|+++|++| |.|..|.|+.+ |||||+|.+.++|.+||. ||+..|.| +.|+|
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~-G~i~~~~i~~~-----g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V 87 (108)
T 1x4c_A 14 SENRVVVSGLPPSGSWQDLKDHMREA-GDVCYADVYRD-----GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRV 87 (108)
T ss_dssp CCCEEEEESCCSSCCHHHHHHHHGGG-SCEEEEEEETT-----TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhc-CCEeEEEEecC-----CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEE
Confidence 45899999999999999999999997 99999999987 699999999999999999 99999999 99999
Q ss_pred eecCCCCCCC
Q 017897 348 SPSKTPVRPR 357 (364)
Q Consensus 348 ~~ak~~~~~~ 357 (364)
.+++++.+.+
T Consensus 88 ~~a~~~~~~~ 97 (108)
T 1x4c_A 88 KVDGPRSPSY 97 (108)
T ss_dssp EESSCCSCCC
T ss_pred EeCCCCCCCC
Confidence 9999865443
No 220
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=5.3e-16 Score=124.29 Aligned_cols=80 Identities=21% Similarity=0.352 Sum_probs=72.8
Q ss_pred CCCCCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCC-CCCceEEEEEeCCHHHHHHHHH-cccccc--------C
Q 017897 174 DEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP-NSVLRFAFVEFTDEEGARAALS-LAGTML--------G 243 (364)
Q Consensus 174 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~-~~~rG~aFV~F~~~~~A~~al~-l~g~~l--------~ 243 (364)
.....++|||+|||+++++++|+++|+.||.|.+++|+.++ +.++|||||+|.+.++|.+|++ |+|..+ .
T Consensus 21 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~ 100 (114)
T 1x5o_A 21 QEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAP 100 (114)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCC
Confidence 34457899999999999999999999999999999999987 3469999999999999999998 999999 5
Q ss_pred CeeEEEeeCC
Q 017897 244 FYPVRVLPSK 253 (364)
Q Consensus 244 g~~i~V~~a~ 253 (364)
+++|.|.+++
T Consensus 101 ~~~l~v~~a~ 110 (114)
T 1x5o_A 101 TEPLLCKFSG 110 (114)
T ss_dssp SSCBEEEECC
T ss_pred CCceeEEccC
Confidence 7889999985
No 221
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.66 E-value=5.5e-17 Score=124.41 Aligned_cols=76 Identities=28% Similarity=0.418 Sum_probs=69.6
Q ss_pred cEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCC--CCCceEEEEEeCCHHHHHHHHH-ccccccCCeeEEEeeCCCC
Q 017897 179 RTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP--NSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSKTA 255 (364)
Q Consensus 179 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~--~~~rG~aFV~F~~~~~A~~al~-l~g~~l~g~~i~V~~a~~~ 255 (364)
++|||+|||.++++++|+++|++||.|.+++++.++ +.++|||||+|.+.+ |.+|+. ++|..+.|++|.|.++...
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 589999999999999999999999999999999987 457999999999999 999998 9999999999999998653
No 222
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.66 E-value=8.3e-16 Score=127.58 Aligned_cols=83 Identities=24% Similarity=0.337 Sum_probs=75.9
Q ss_pred cCCCCCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEeCCHHHHHHHHH-ccccccCCeeEEE
Q 017897 173 QDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRV 249 (364)
Q Consensus 173 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~~--~~rG~aFV~F~~~~~A~~al~-l~g~~l~g~~i~V 249 (364)
......++|||+|||.++++++|+++|+.||.|.+|+++.++. .++|||||+|.+.++|.+|++ |++..+.|++|.|
T Consensus 37 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 116 (139)
T 1u6f_A 37 PEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKV 116 (139)
T ss_dssp CCTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 3445678999999999999999999999999999999999875 369999999999999999998 9999999999999
Q ss_pred eeCCCC
Q 017897 250 LPSKTA 255 (364)
Q Consensus 250 ~~a~~~ 255 (364)
.+++..
T Consensus 117 ~~a~~~ 122 (139)
T 1u6f_A 117 ALAASG 122 (139)
T ss_dssp EESSCC
T ss_pred EECCCC
Confidence 998753
No 223
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=4.7e-16 Score=120.97 Aligned_cols=78 Identities=15% Similarity=0.284 Sum_probs=71.9
Q ss_pred ccCceEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccCCCCeeEEEEEecCHHHHHHHHh-cCCCeeC--CeeeEEe
Q 017897 272 EMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLG--SLPIRVS 348 (364)
Q Consensus 272 ~~~~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~e~A~~Al~-lng~~~~--g~~l~V~ 348 (364)
..+.++|||+|||..+++++|+++|++| |.|.+|.+.++ +|||||+|.+.++|.+|+. ||+..+. |+.|+|.
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~-G~v~~v~~~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~ 88 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRF-GSIRTIDHVKG----DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVD 88 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTT-SCEEEEEECSS----SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc-CCeeEEEEeCC----CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEE
Confidence 3456899999999999999999999997 99999999875 5699999999999999999 9999999 9999999
Q ss_pred ecCCCC
Q 017897 349 PSKTPV 354 (364)
Q Consensus 349 ~ak~~~ 354 (364)
|++++.
T Consensus 89 ~a~~~~ 94 (97)
T 1why_A 89 FAKSGP 94 (97)
T ss_dssp ECCCCC
T ss_pred ECCCCC
Confidence 998864
No 224
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=6.2e-16 Score=122.85 Aligned_cols=79 Identities=18% Similarity=0.180 Sum_probs=72.0
Q ss_pred CCcEEEEeCCCCCCcHHHHHHHhhcCCC-eeEEEEe-cCCC--CCceEEEEEeCCHHHHHHHHH-cc--ccccCCeeEEE
Q 017897 177 IRRTVYVSDIDQQVTEEQLATLFLTCGQ-VVDCRIC-GDPN--SVLRFAFVEFTDEEGARAALS-LA--GTMLGFYPVRV 249 (364)
Q Consensus 177 ~~~~lfV~nLp~~~te~~L~~~F~~~G~-i~~~~i~-~d~~--~~rG~aFV~F~~~~~A~~al~-l~--g~~l~g~~i~V 249 (364)
..++|||+|||+++++++|+++|+.||. |.++.++ .++. .++|||||+|.+.++|.+|++ |+ +..+.|++|.|
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~V 86 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAV 86 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEE
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEEE
Confidence 4689999999999999999999999998 9999998 6664 579999999999999999998 86 58999999999
Q ss_pred eeCCCC
Q 017897 250 LPSKTA 255 (364)
Q Consensus 250 ~~a~~~ 255 (364)
.|+++.
T Consensus 87 ~~a~~~ 92 (109)
T 2dis_A 87 DWAEPE 92 (109)
T ss_dssp EESCSS
T ss_pred EEcCCC
Confidence 998753
No 225
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=2.9e-16 Score=123.98 Aligned_cols=80 Identities=19% Similarity=0.177 Sum_probs=72.3
Q ss_pred CCCCcEEEEeCCCCCCcHHHHHHHhhcCCCeeE-EEEecCC-CCCceEEEEEeCCHHHHHHHHHccccccCCeeEEEeeC
Q 017897 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVD-CRICGDP-NSVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPS 252 (364)
Q Consensus 175 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~-~~i~~d~-~~~rG~aFV~F~~~~~A~~al~l~g~~l~g~~i~V~~a 252 (364)
....++|||+|||+++++++|+++|+.||.|.+ ++|+.+. ++++|||||+|.++++|.+||+.++..+.|+.|.|.++
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~~~~~~~gr~i~v~~~ 91 (104)
T 1wg5_A 12 TANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKS 91 (104)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTTTTCCSSSSCCEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHhCcchhCCcEEEEEEC
Confidence 345689999999999999999999999999987 8888874 45799999999999999999988999999999999987
Q ss_pred CC
Q 017897 253 KT 254 (364)
Q Consensus 253 ~~ 254 (364)
..
T Consensus 92 ~~ 93 (104)
T 1wg5_A 92 SR 93 (104)
T ss_dssp CT
T ss_pred CH
Confidence 53
No 226
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=6.3e-16 Score=122.79 Aligned_cols=82 Identities=18% Similarity=0.134 Sum_probs=74.1
Q ss_pred cCceEEEEeCCCCCCCHHHHHHHhhhcCCc-eeEEEEe-ccC--CCCeeEEEEEecCHHHHHHHHh-cC--CCeeCCeee
Q 017897 273 MCSRTIYCTNIDKKVTQGDIKLFFESVCGE-VQRLRLL-GDY--QHSTRIAFVEFAMAESAIAALN-CS--GAVLGSLPI 345 (364)
Q Consensus 273 ~~~~~l~V~nLp~~~tee~L~~~F~~~~G~-I~~v~i~-~d~--~~~kg~afV~F~~~e~A~~Al~-ln--g~~~~g~~l 345 (364)
...++|||+|||..+++++|+++|++| |. |.+|.++ .+. +.++|||||+|.+.++|.+|+. |+ +..+.|+.|
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~-G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l 84 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKV-TEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 84 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHH-STTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCC
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHh-cCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeE
Confidence 346899999999999999999999997 98 9999998 554 4789999999999999999999 96 589999999
Q ss_pred EEeecCCCCC
Q 017897 346 RVSPSKTPVR 355 (364)
Q Consensus 346 ~V~~ak~~~~ 355 (364)
+|.|+++...
T Consensus 85 ~V~~a~~~~~ 94 (109)
T 2dis_A 85 AVDWAEPEID 94 (109)
T ss_dssp EEEESCSSCS
T ss_pred EEEEcCCCCC
Confidence 9999987654
No 227
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=1.1e-15 Score=121.39 Aligned_cols=74 Identities=22% Similarity=0.188 Sum_probs=70.1
Q ss_pred CCCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-ccccccCC-----eeEEE
Q 017897 176 VIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGF-----YPVRV 249 (364)
Q Consensus 176 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~~~~rG~aFV~F~~~~~A~~al~-l~g~~l~g-----~~i~V 249 (364)
...++|||+|||+++++++|+++|++||.|..|+|+.+ |||||+|.+.++|++||+ ||+..|.| ++|.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-----g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V 87 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-----GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRV 87 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-----TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-----CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEE
Confidence 34689999999999999999999999999999999987 799999999999999998 99999999 99999
Q ss_pred eeCCC
Q 017897 250 LPSKT 254 (364)
Q Consensus 250 ~~a~~ 254 (364)
.++.+
T Consensus 88 ~~a~~ 92 (108)
T 1x4c_A 88 KVDGP 92 (108)
T ss_dssp EESSC
T ss_pred EeCCC
Confidence 99875
No 228
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.65 E-value=4.3e-16 Score=132.17 Aligned_cols=78 Identities=22% Similarity=0.264 Sum_probs=72.6
Q ss_pred CceEEEEeCCCCCCCHHHHHHHhhhcCC--ceeEEEEeccC--CCCeeEEEEEecCHHHHHHHHh-cCCCeeCCeeeEEe
Q 017897 274 CSRTIYCTNIDKKVTQGDIKLFFESVCG--EVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVS 348 (364)
Q Consensus 274 ~~~~l~V~nLp~~~tee~L~~~F~~~~G--~I~~v~i~~d~--~~~kg~afV~F~~~e~A~~Al~-lng~~~~g~~l~V~ 348 (364)
..++|||+|||..+++++|+++|++| | .|.+|+|++|. +.++|||||+|.+.++|.+||. |||..|+|+.|+|.
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~-G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~ 132 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSI-GVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVR 132 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHT-TCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHH-CCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEE
Confidence 45899999999999999999999997 9 99999999884 7899999999999999999999 99999999999999
Q ss_pred ecCC
Q 017897 349 PSKT 352 (364)
Q Consensus 349 ~ak~ 352 (364)
++++
T Consensus 133 ~a~~ 136 (156)
T 3n9u_C 133 PATR 136 (156)
T ss_dssp ECCH
T ss_pred EcCC
Confidence 9865
No 229
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=3.1e-16 Score=123.43 Aligned_cols=78 Identities=32% Similarity=0.460 Sum_probs=72.6
Q ss_pred CCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEeCCHHHHHHHHH-ccccccCCeeEEEeeCC
Q 017897 177 IRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSK 253 (364)
Q Consensus 177 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~~--~~rG~aFV~F~~~~~A~~al~-l~g~~l~g~~i~V~~a~ 253 (364)
..++|||+|||.++++++|+++|+.||.|.+++++.++. .++|||||+|.+.++|.+|++ |+|..+.|++|.|.++.
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 86 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAA 86 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETT
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCC
Confidence 357899999999999999999999999999999999864 469999999999999999998 99999999999999985
Q ss_pred C
Q 017897 254 T 254 (364)
Q Consensus 254 ~ 254 (364)
.
T Consensus 87 ~ 87 (104)
T 1p1t_A 87 S 87 (104)
T ss_dssp C
T ss_pred C
Confidence 4
No 230
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.65 E-value=7.2e-16 Score=121.32 Aligned_cols=81 Identities=25% Similarity=0.430 Sum_probs=73.3
Q ss_pred cCceEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccCCCCeeEEEEEecCHHHHHHHHh-cCCCeeCCeeeEEeecC
Q 017897 273 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSPSK 351 (364)
Q Consensus 273 ~~~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~e~A~~Al~-lng~~~~g~~l~V~~ak 351 (364)
...++|||+|||..+++++|+++|++| |.|..|.++++ ||||+|.+.++|.+|+. ||+..|.|+.|+|.|++
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~-G~i~~v~~~~~------~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 81 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQF-GKLERVKKLKD------YAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAK 81 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHH-SCEEEEEECSS------CEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc-CCEEEEEEECC------EEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcC
Confidence 346899999999999999999999997 99999999754 99999999999999999 99999999999999998
Q ss_pred CCCCCCCCC
Q 017897 352 TPVRPRAPR 360 (364)
Q Consensus 352 ~~~~~~~~r 360 (364)
++..++..+
T Consensus 82 ~~~~~~~~~ 90 (103)
T 2dgu_A 82 PPDQKRKER 90 (103)
T ss_dssp CCCCCCCCC
T ss_pred CCcccchhh
Confidence 876655443
No 231
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.65 E-value=1.5e-16 Score=117.60 Aligned_cols=73 Identities=18% Similarity=0.269 Sum_probs=69.1
Q ss_pred EEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccC--CCCeeEEEEEecCHHHHHHHHhcCCCeeCCeeeEEeec
Q 017897 277 TIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALNCSGAVLGSLPIRVSPS 350 (364)
Q Consensus 277 ~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~--~~~kg~afV~F~~~e~A~~Al~lng~~~~g~~l~V~~a 350 (364)
+|||+|||..+++++|+++|++| |.|.+|.+++++ +.++|||||+|.+.++|.+|+.+|+..++|++|+|.||
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~-G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQF-GKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTT-SCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHSSSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhc-CCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHCCCCEECCEEEEEEeC
Confidence 58999999999999999999996 999999999875 68899999999999999999999999999999999985
No 232
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=2.2e-16 Score=124.30 Aligned_cols=85 Identities=21% Similarity=0.181 Sum_probs=76.1
Q ss_pred ccCceEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccC-CCCeeEEEEEecCHHHHHHHHhcCCCeeCCeeeEEeec
Q 017897 272 EMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY-QHSTRIAFVEFAMAESAIAALNCSGAVLGSLPIRVSPS 350 (364)
Q Consensus 272 ~~~~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~-~~~kg~afV~F~~~e~A~~Al~lng~~~~g~~l~V~~a 350 (364)
....++|||+|||+.+++++|+++|++| | +.+|.|++++ ++++|||||+|.+.++|.+||.+|+..|+|+.|+|.++
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~-G-~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~~ 89 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATENDIYNFFSPL-N-PMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVELFLN 89 (102)
T ss_dssp CSSSCEEEEESCCTTCCHHHHHHSSCSC-C-CSEEEEEESSSSCEEEEEEEECSSSHHHHHHHTTSSCCSSSSCCEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHc-C-ceEEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEEC
Confidence 3456899999999999999999999996 9 5599999886 78999999999999999999999999999999999999
Q ss_pred CCCCCCCC
Q 017897 351 KTPVRPRA 358 (364)
Q Consensus 351 k~~~~~~~ 358 (364)
.++...+.
T Consensus 90 ~~~~~~~~ 97 (102)
T 1wez_A 90 STAGTSGS 97 (102)
T ss_dssp CCCCCCCC
T ss_pred CCCCCCCC
Confidence 88765543
No 233
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=6.7e-16 Score=120.12 Aligned_cols=75 Identities=21% Similarity=0.267 Sum_probs=69.8
Q ss_pred CCCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-ccccccC--CeeEEEeeC
Q 017897 176 VIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLG--FYPVRVLPS 252 (364)
Q Consensus 176 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~~~~rG~aFV~F~~~~~A~~al~-l~g~~l~--g~~i~V~~a 252 (364)
...++|||+|||+++++++|+++|++||.|.+++++.+ +|||||+|.+.++|++|++ |++..+. |++|.|.++
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a 90 (97)
T 1why_A 15 NPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG----DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFA 90 (97)
T ss_dssp CCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS----SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC----CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEEC
Confidence 34689999999999999999999999999999999865 5899999999999999998 9999999 999999998
Q ss_pred CC
Q 017897 253 KT 254 (364)
Q Consensus 253 ~~ 254 (364)
++
T Consensus 91 ~~ 92 (97)
T 1why_A 91 KS 92 (97)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 234
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=4e-16 Score=124.25 Aligned_cols=75 Identities=17% Similarity=0.132 Sum_probs=70.4
Q ss_pred CcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCC-CCCceEEEEEeCCHHHHHHHHHccccccCCeeEEEeeCC
Q 017897 178 RRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP-NSVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSK 253 (364)
Q Consensus 178 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~-~~~rG~aFV~F~~~~~A~~al~l~g~~l~g~~i~V~~a~ 253 (364)
..+|||+|||+++|+++|+++|+.| .|.+|+|+.|+ ++++|||||+|.++++|++||+++++.|+|+.|.|.++.
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~a~ 91 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRMLMIQRYVEVSPAT 91 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHHHTTTEEETTEEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECC
Confidence 4789999999999999999999999 89999999887 457999999999999999999999999999999998874
No 235
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.65 E-value=1.1e-16 Score=125.53 Aligned_cols=79 Identities=25% Similarity=0.386 Sum_probs=70.9
Q ss_pred CCCCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCC---CCCceEEEEEeCCHHHHHHHHHccccccCCeeEEEee
Q 017897 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP---NSVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLP 251 (364)
Q Consensus 175 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~---~~~rG~aFV~F~~~~~A~~al~l~g~~l~g~~i~V~~ 251 (364)
....++|||+|||.++++++|+++|+.|| |.+|+++.++ +.++|||||+|.+.++|.+|+.++|..+.|+.|.|.+
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai~l~g~~~~g~~l~V~~ 94 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNRRIRVDV 94 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHHHTTTCCBTTBCCCCEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHHhcCCCEECCeEEEEEe
Confidence 44578999999999999999999999999 9999999986 4579999999999999999999999999999999999
Q ss_pred CCC
Q 017897 252 SKT 254 (364)
Q Consensus 252 a~~ 254 (364)
++.
T Consensus 95 a~~ 97 (100)
T 2j76_E 95 ADQ 97 (100)
T ss_dssp CCC
T ss_pred ccC
Confidence 853
No 236
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.65 E-value=2.4e-16 Score=121.96 Aligned_cols=78 Identities=22% Similarity=0.185 Sum_probs=71.0
Q ss_pred CceEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccC--CCCeeEEEEEecCHHHHHHHHh-cCCCeeCCeeeEEeec
Q 017897 274 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSPS 350 (364)
Q Consensus 274 ~~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~--~~~kg~afV~F~~~e~A~~Al~-lng~~~~g~~l~V~~a 350 (364)
..++|||+|||..+++++|+++|++| |.|..+.++.+. +.++|||||+|.+.++|.+|+. ||+..|.|++|+|.++
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~-G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a 92 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGY-QVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGP 92 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTS-CBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhc-CCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEec
Confidence 45899999999999999999999997 999988887764 6789999999999999999999 9999999999999997
Q ss_pred CC
Q 017897 351 KT 352 (364)
Q Consensus 351 k~ 352 (364)
..
T Consensus 93 ~s 94 (95)
T 2ek1_A 93 SS 94 (95)
T ss_dssp C-
T ss_pred cC
Confidence 64
No 237
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.65 E-value=3.3e-16 Score=122.77 Aligned_cols=75 Identities=23% Similarity=0.251 Sum_probs=69.5
Q ss_pred CCCCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-ccccccCCeeEEEeeCC
Q 017897 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSK 253 (364)
Q Consensus 175 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~~~~rG~aFV~F~~~~~A~~al~-l~g~~l~g~~i~V~~a~ 253 (364)
+...++|||+|||.++++++|+++|++||.|.++++.. ++|||||+|.+.++|.+|++ |+|..+.|+.|.|.|++
T Consensus 24 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 99 (101)
T 2la4_A 24 PPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP----EKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGK 99 (101)
T ss_dssp CSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET----TTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCC
T ss_pred CCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec----CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEecc
Confidence 33468999999999999999999999999999999983 46899999999999999997 99999999999999985
No 238
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=2.4e-16 Score=124.08 Aligned_cols=81 Identities=25% Similarity=0.405 Sum_probs=75.2
Q ss_pred CceEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccC--CCCeeEEEEEecCHHHHHHHHh-cCCCeeCCeeeEEeec
Q 017897 274 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSPS 350 (364)
Q Consensus 274 ~~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~--~~~kg~afV~F~~~e~A~~Al~-lng~~~~g~~l~V~~a 350 (364)
..++|||+|||..+++++|+++|++| |.|..|.++++. +.++|||||+|.+.++|.+|+. |||..++|+.|+|.|+
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~-G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 85 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEV-GPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNA 85 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTT-SCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEET
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhc-CCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeC
Confidence 45899999999999999999999997 999999999874 6789999999999999999999 9999999999999999
Q ss_pred CCCCC
Q 017897 351 KTPVR 355 (364)
Q Consensus 351 k~~~~ 355 (364)
++...
T Consensus 86 ~~~~~ 90 (104)
T 1p1t_A 86 ASEKN 90 (104)
T ss_dssp TCTTH
T ss_pred CCccc
Confidence 87643
No 239
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.65 E-value=1.5e-16 Score=131.00 Aligned_cols=81 Identities=20% Similarity=0.223 Sum_probs=75.1
Q ss_pred ccCceEEEEeCCCCCCCHHHHHHHhhhcCCceeE--EEEeccC--CCCeeEEEEEecCHHHHHHHHh-cCCC----eeCC
Q 017897 272 EMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQR--LRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGA----VLGS 342 (364)
Q Consensus 272 ~~~~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~--v~i~~d~--~~~kg~afV~F~~~e~A~~Al~-lng~----~~~g 342 (364)
....++|||+|||+.+++++|+++|++| |.|.. |+|++|. ++++|||||+|.+. +|.+|+. |||. .++|
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~-G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~g 97 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAPY-AVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDG 97 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGGG-CCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGG
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHh-CCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCC
Confidence 4567899999999999999999999997 99977 9999986 78999999999999 9999999 9999 9999
Q ss_pred eeeEEeecCCCC
Q 017897 343 LPIRVSPSKTPV 354 (364)
Q Consensus 343 ~~l~V~~ak~~~ 354 (364)
+.|+|.|+++..
T Consensus 98 r~l~V~~a~~~~ 109 (131)
T 2m2b_A 98 KTINVEFAKGSK 109 (131)
T ss_dssp CCCCCEECCCSC
T ss_pred EEEEEEECCCCC
Confidence 999999998763
No 240
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=2.4e-16 Score=122.77 Aligned_cols=79 Identities=15% Similarity=0.133 Sum_probs=71.8
Q ss_pred CCCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEeCCHHHHHHHHH-ccccccCCeeEEEeeC
Q 017897 176 VIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPS 252 (364)
Q Consensus 176 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~~--~~rG~aFV~F~~~~~A~~al~-l~g~~l~g~~i~V~~a 252 (364)
...++|||+|||+++++++|+++|++||.|..+.++.++. .++|||||+|.+.++|++|++ |++..|.|++|.|.++
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 92 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLG 92 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEc
Confidence 3468999999999999999999999999998888877654 469999999999999999997 9999999999999998
Q ss_pred CC
Q 017897 253 KT 254 (364)
Q Consensus 253 ~~ 254 (364)
..
T Consensus 93 ~~ 94 (98)
T 2cqp_A 93 SG 94 (98)
T ss_dssp SC
T ss_pred CC
Confidence 53
No 241
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.65 E-value=7e-17 Score=119.40 Aligned_cols=73 Identities=18% Similarity=0.322 Sum_probs=68.4
Q ss_pred EEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEeCCHHHHHHHHHccccccCCeeEEEeeC
Q 017897 180 TVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPS 252 (364)
Q Consensus 180 ~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~~--~~rG~aFV~F~~~~~A~~al~l~g~~l~g~~i~V~~a 252 (364)
+|||+|||+++++++|+++|++||.|.++.++.++. .++|||||+|.+.++|.+|+++++..+.|++|.|+++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTTSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEC
Confidence 589999999999999999999999999999998874 5799999999999999999998999999999999874
No 242
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=2.9e-16 Score=125.92 Aligned_cols=77 Identities=30% Similarity=0.434 Sum_probs=72.6
Q ss_pred CCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEeCCHHHHHHHHHccccccCCeeEEEeeCC
Q 017897 177 IRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSK 253 (364)
Q Consensus 177 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~~--~~rG~aFV~F~~~~~A~~al~l~g~~l~g~~i~V~~a~ 253 (364)
..++|||+|||.++++++|+++|+.||.|.+|+|+.++. .++|||||+|.+.++|.+||.|++..|.|+.|.|.++.
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~ 102 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQ 102 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHHHHTTEEETTEEEEEEEHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHHHcCCCEeCCeEEEEEecC
Confidence 457999999999999999999999999999999999874 47999999999999999999999999999999999975
No 243
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=1.1e-15 Score=117.35 Aligned_cols=80 Identities=21% Similarity=0.308 Sum_probs=73.9
Q ss_pred cCceEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccC-CCCeeEEEEEecCHHHHHHHHhcCCCeeCCeeeEEeecC
Q 017897 273 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY-QHSTRIAFVEFAMAESAIAALNCSGAVLGSLPIRVSPSK 351 (364)
Q Consensus 273 ~~~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~-~~~kg~afV~F~~~e~A~~Al~lng~~~~g~~l~V~~ak 351 (364)
...++|||+|||..+++++|+++|++| .|..|.|+++. +.++|||||+|.+.++|.+|+.||+..|+|+.|+|.+++
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~--~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~~g~~~~gr~i~v~~a~ 85 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAPL--KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALKCNREYMGGRYIEVFREK 85 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTTS--CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHHSCSEEETTEEEEEEEES
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhhC--CceEEEEEECCCCCCceEEEEEECCHHHHHHHHHhCCceeCCcEEEEEECC
Confidence 345899999999999999999999995 89999999884 688999999999999999999999999999999999998
Q ss_pred CCC
Q 017897 352 TPV 354 (364)
Q Consensus 352 ~~~ 354 (364)
+++
T Consensus 86 ~~~ 88 (91)
T 2dgw_A 86 SGP 88 (91)
T ss_dssp SCC
T ss_pred cCC
Confidence 764
No 244
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.65 E-value=5.2e-16 Score=120.39 Aligned_cols=81 Identities=21% Similarity=0.288 Sum_probs=72.6
Q ss_pred ccCceEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccCCCCeeEEEEEecCHHHHHHHHh-cCCCeeCCeeeEEeec
Q 017897 272 EMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSPS 350 (364)
Q Consensus 272 ~~~~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~e~A~~Al~-lng~~~~g~~l~V~~a 350 (364)
....++|||+|||..+++++|+++|++| |.|..+ ...+.++|||||+|.+.++|.+|+. |||..++|+.|+|.|+
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~-g~v~~~---~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 88 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDA-LEIRLV---SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYT 88 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSE-EEECCE---EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhC-CcEEEe---CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEc
Confidence 3456899999999999999999999997 988776 4456789999999999999999999 9999999999999999
Q ss_pred CCCCCC
Q 017897 351 KTPVRP 356 (364)
Q Consensus 351 k~~~~~ 356 (364)
+++.+.
T Consensus 89 ~~~~~~ 94 (96)
T 1fjc_A 89 GEKGGT 94 (96)
T ss_dssp SSSCCC
T ss_pred CCCCCC
Confidence 876543
No 245
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=4.6e-16 Score=121.50 Aligned_cols=76 Identities=24% Similarity=0.274 Sum_probs=70.6
Q ss_pred CCCCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-ccccccCCeeEEEeeCC
Q 017897 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSK 253 (364)
Q Consensus 175 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~~~~rG~aFV~F~~~~~A~~al~-l~g~~l~g~~i~V~~a~ 253 (364)
....++|||+|||+++++++|+++|++||.|.+++++.+ +|||||+|.+.++|.+|++ |++..+.|++|.|.++.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~----kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 87 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD----KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFAC 87 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT----TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC----CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcC
Confidence 345689999999999999999999999999999999865 5899999999999999997 99999999999999986
Q ss_pred C
Q 017897 254 T 254 (364)
Q Consensus 254 ~ 254 (364)
.
T Consensus 88 ~ 88 (99)
T 2cpj_A 88 H 88 (99)
T ss_dssp C
T ss_pred C
Confidence 4
No 246
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.65 E-value=4.2e-16 Score=127.16 Aligned_cols=80 Identities=23% Similarity=0.302 Sum_probs=73.8
Q ss_pred CCCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCC--CCCceEEEEEeCCHHHHHHHHH-ccccccCCeeEEEeeC
Q 017897 176 VIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP--NSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPS 252 (364)
Q Consensus 176 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~--~~~rG~aFV~F~~~~~A~~al~-l~g~~l~g~~i~V~~a 252 (364)
...++|||+|||+++++++|+++|+.||.|.+|.|+.++ +.++|||||+|.+.++|.+|++ |++..|.|+.|.|.++
T Consensus 20 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 99 (126)
T 3ex7_B 20 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 99 (126)
T ss_dssp SSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEe
Confidence 346899999999999999999999999999999999986 3469999999999999999998 9999999999999998
Q ss_pred CCC
Q 017897 253 KTA 255 (364)
Q Consensus 253 ~~~ 255 (364)
...
T Consensus 100 ~~~ 102 (126)
T 3ex7_B 100 FVR 102 (126)
T ss_dssp EES
T ss_pred cCC
Confidence 643
No 247
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.65 E-value=2.2e-16 Score=129.24 Aligned_cols=83 Identities=23% Similarity=0.287 Sum_probs=73.5
Q ss_pred cCceEEEEeCCCCCCCHHHHH----HHhhhcCCceeEEEEeccCCCCeeEEEEEecCHHHHHHHHh-cCCCeeCCeeeEE
Q 017897 273 MCSRTIYCTNIDKKVTQGDIK----LFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRV 347 (364)
Q Consensus 273 ~~~~~l~V~nLp~~~tee~L~----~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~e~A~~Al~-lng~~~~g~~l~V 347 (364)
.+.++|||+|||+.+++++|+ ++|++| |.|.+|.+.+ .+.++|||||+|.+.++|.+|+. |||..|.|++|+|
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~-G~I~~v~i~~-~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V 104 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQ-GDILDIVVDL-SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVI 104 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHH-SCEEEEEECC-CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccC-CCeEEEEecc-CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEE
Confidence 346899999999999999876 699997 9999998865 35789999999999999999999 9999999999999
Q ss_pred eecCCCCCCC
Q 017897 348 SPSKTPVRPR 357 (364)
Q Consensus 348 ~~ak~~~~~~ 357 (364)
.|++++....
T Consensus 105 ~~a~~~~~~~ 114 (127)
T 2a3j_A 105 TFSETPQSQV 114 (127)
T ss_dssp EECCCCCHHH
T ss_pred EEccCcchhc
Confidence 9998765433
No 248
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.65 E-value=1.7e-16 Score=119.31 Aligned_cols=72 Identities=19% Similarity=0.273 Sum_probs=67.2
Q ss_pred eEEEEeCCCCCC------CHHHHHHHhhhcCCceeEEEEeccCCCCeeEEEEEecCHHHHHHHHh-cCCCeeCCe-eeEE
Q 017897 276 RTIYCTNIDKKV------TQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSL-PIRV 347 (364)
Q Consensus 276 ~~l~V~nLp~~~------tee~L~~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~e~A~~Al~-lng~~~~g~-~l~V 347 (364)
++|||+|||..+ ++++|+++|++| |.|.+|.+++..+.++|||||+|.+.++|.+|+. |||..++|+ +|+|
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~-G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKF-GKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTT-CCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhc-CCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence 689999999999 679999999997 9999999987678899999999999999999999 999999999 8887
Q ss_pred e
Q 017897 348 S 348 (364)
Q Consensus 348 ~ 348 (364)
+
T Consensus 81 ~ 81 (81)
T 2krb_A 81 N 81 (81)
T ss_dssp C
T ss_pred C
Confidence 4
No 249
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.64 E-value=1.2e-15 Score=118.85 Aligned_cols=76 Identities=14% Similarity=0.246 Sum_probs=70.4
Q ss_pred ccCceEEEEeCCCC-CCCHHHHHHHhhhcCCceeEEEEeccCCCCeeEEEEEecCHHHHHHHHh-cCCCeeCCeeeEEee
Q 017897 272 EMCSRTIYCTNIDK-KVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSP 349 (364)
Q Consensus 272 ~~~~~~l~V~nLp~-~~tee~L~~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~e~A~~Al~-lng~~~~g~~l~V~~ 349 (364)
....++|||+|||. .+++++|+++|++| |.|.+|.+. +|||||+|.+.++|.+|+. |||..++|+.|+|.|
T Consensus 19 ~~~~~~l~V~nLp~~~~t~~~L~~~F~~~-G~v~~v~i~------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 91 (97)
T 2xnq_A 19 SHMKSRLFIGNLPLKNVSKEDLFRIFSPY-GHIMQINIK------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEV 91 (97)
T ss_dssp CCTTCEEEEESCCSSCCCHHHHHHHHGGG-SCEEEEEEC------SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhc-CCEEEEEEe------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 45678999999998 99999999999997 999999994 5799999999999999999 999999999999999
Q ss_pred cCCCC
Q 017897 350 SKTPV 354 (364)
Q Consensus 350 ak~~~ 354 (364)
++++.
T Consensus 92 a~~~~ 96 (97)
T 2xnq_A 92 SSSNA 96 (97)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 98764
No 250
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.64 E-value=1.6e-16 Score=122.92 Aligned_cols=77 Identities=16% Similarity=0.138 Sum_probs=70.6
Q ss_pred CCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEeCCHHHHHHHHH-ccccccCCeeEEEeeCC
Q 017897 177 IRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSK 253 (364)
Q Consensus 177 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~~--~~rG~aFV~F~~~~~A~~al~-l~g~~l~g~~i~V~~a~ 253 (364)
..++|||+|||+++++++|+++|++||.|..+.++.++. .++|||||+|.++++|++|++ |++..+.|++|.|.++.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPS 93 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEecc
Confidence 458999999999999999999999999999888888664 469999999999999999998 99999999999999874
No 251
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=9.3e-17 Score=121.76 Aligned_cols=78 Identities=15% Similarity=0.213 Sum_probs=72.5
Q ss_pred cCceEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccC--CCCeeEEEEEecCHHHHHHHHh-cCCCeeCCeeeEEee
Q 017897 273 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSP 349 (364)
Q Consensus 273 ~~~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~--~~~kg~afV~F~~~e~A~~Al~-lng~~~~g~~l~V~~ 349 (364)
.+.++|||+|||..+++++|+++|++| |.|.+|.+++++ +.++|||||+|.+.++|.+|+. |||..+.|+.|+++|
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~-G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~ 81 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPY-GKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSG 81 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTT-SCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhc-CCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecC
Confidence 346899999999999999999999997 999999999875 6889999999999999999999 999999999999988
Q ss_pred cC
Q 017897 350 SK 351 (364)
Q Consensus 350 ak 351 (364)
++
T Consensus 82 ~~ 83 (85)
T 1x4e_A 82 PS 83 (85)
T ss_dssp CC
T ss_pred CC
Confidence 65
No 252
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=5.8e-16 Score=122.30 Aligned_cols=80 Identities=16% Similarity=0.164 Sum_probs=71.0
Q ss_pred ccCceEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccCCCCeeEEEEEecCHHHHHHHHh-cCC--CeeCCeeeEEe
Q 017897 272 EMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSG--AVLGSLPIRVS 348 (364)
Q Consensus 272 ~~~~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~e~A~~Al~-lng--~~~~g~~l~V~ 348 (364)
..+.++|||+|||..+++++|+++|++| |.|.+|.++++ +|||||+|.+.++|.+|+. |++ ..+.|++|+|.
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~f-G~V~~v~i~~~----kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~ 86 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKF-GTICYVMMMPF----KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFN 86 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTT-SCEEEEEEETT----TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhC-CCEEEEEEECC----CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 3456899999999999999999999997 99999999875 5699999999999999999 865 46999999999
Q ss_pred ecCCCCCC
Q 017897 349 PSKTPVRP 356 (364)
Q Consensus 349 ~ak~~~~~ 356 (364)
|++.+...
T Consensus 87 ~a~~~~~~ 94 (104)
T 1wex_A 87 YSTSKRIT 94 (104)
T ss_dssp ECSSSSCC
T ss_pred EccCcccc
Confidence 99876443
No 253
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.64 E-value=1.9e-16 Score=124.13 Aligned_cols=80 Identities=25% Similarity=0.368 Sum_probs=72.2
Q ss_pred ccCceEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccC---CCCeeEEEEEecCHHHHHHHHhcCCCeeCCeeeEEe
Q 017897 272 EMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY---QHSTRIAFVEFAMAESAIAALNCSGAVLGSLPIRVS 348 (364)
Q Consensus 272 ~~~~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~---~~~kg~afV~F~~~e~A~~Al~lng~~~~g~~l~V~ 348 (364)
....++|||+|||..+++++|+++|++| | |.+|.|+++. ++++|||||+|.+.++|.+|+.|||..|+|+.|+|.
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~-G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai~l~g~~~~g~~l~V~ 93 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRGL-N-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNRRIRVD 93 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCSS-C-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHHHTTTCCBTTBCCCCE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhc-C-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHHhcCCCEECCeEEEEE
Confidence 4456899999999999999999999997 9 9999999874 678999999999999999999999999999999999
Q ss_pred ecCCC
Q 017897 349 PSKTP 353 (364)
Q Consensus 349 ~ak~~ 353 (364)
++++.
T Consensus 94 ~a~~~ 98 (100)
T 2j76_E 94 VADQA 98 (100)
T ss_dssp ECCCS
T ss_pred eccCC
Confidence 99875
No 254
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.64 E-value=7.9e-16 Score=127.59 Aligned_cols=78 Identities=29% Similarity=0.400 Sum_probs=71.7
Q ss_pred CCCCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEeCCHHHHHHHHH-ccccccCCeeEEEee
Q 017897 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLP 251 (364)
Q Consensus 175 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~~--~~rG~aFV~F~~~~~A~~al~-l~g~~l~g~~i~V~~ 251 (364)
....++|||+|||+++++++|+++|++||.|.+++++.++. .++|||||+|.+.++|.+|++ |++..+.|++|+|.+
T Consensus 60 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 139 (140)
T 2ku7_A 60 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 139 (140)
T ss_dssp CSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC
T ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 33578999999999999999999999999999999999864 479999999999999999997 999999999999987
Q ss_pred C
Q 017897 252 S 252 (364)
Q Consensus 252 a 252 (364)
|
T Consensus 140 A 140 (140)
T 2ku7_A 140 A 140 (140)
T ss_dssp -
T ss_pred C
Confidence 5
No 255
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=2e-16 Score=126.87 Aligned_cols=81 Identities=31% Similarity=0.555 Sum_probs=75.2
Q ss_pred cCceEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccC--CCCeeEEEEEecCHHHHHHHHhcCCCeeCCeeeEEeec
Q 017897 273 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALNCSGAVLGSLPIRVSPS 350 (364)
Q Consensus 273 ~~~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~--~~~kg~afV~F~~~e~A~~Al~lng~~~~g~~l~V~~a 350 (364)
...++|||+|||..+++++|+++|++| |.|..|.|+.+. +.++|||||+|.+.++|.+||.|||..|+|+.|+|.|+
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~-G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a 101 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSAV-GKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQAS 101 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTTT-SCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHHHHTTEEETTEEEEEEEH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhC-CCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHHHcCCCEeCCeEEEEEec
Confidence 356899999999999999999999996 999999999886 67899999999999999999999999999999999999
Q ss_pred CCCC
Q 017897 351 KTPV 354 (364)
Q Consensus 351 k~~~ 354 (364)
++..
T Consensus 102 ~~~~ 105 (114)
T 2cq4_A 102 QAEK 105 (114)
T ss_dssp HHHH
T ss_pred CCCc
Confidence 7653
No 256
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=9e-16 Score=122.94 Aligned_cols=81 Identities=19% Similarity=0.327 Sum_probs=74.4
Q ss_pred ccCceEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccC-CCCeeEEEEEecCHHHHHHHHh-cCCCee--------C
Q 017897 272 EMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY-QHSTRIAFVEFAMAESAIAALN-CSGAVL--------G 341 (364)
Q Consensus 272 ~~~~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~-~~~kg~afV~F~~~e~A~~Al~-lng~~~--------~ 341 (364)
....++|||+|||..+++++|+++|++| |.|.+|.|+++. +.++|||||+|.+.++|.+|+. |||..+ .
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~-G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~ 100 (114)
T 1x5o_A 22 EQDPTNLYISNLPLSMDEQELENMLKPF-GQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAP 100 (114)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHTTTTT-SCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc-CCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCC
Confidence 3456899999999999999999999996 999999999885 6789999999999999999999 999999 6
Q ss_pred CeeeEEeecCCC
Q 017897 342 SLPIRVSPSKTP 353 (364)
Q Consensus 342 g~~l~V~~ak~~ 353 (364)
+++|.|.|++++
T Consensus 101 ~~~l~v~~a~p~ 112 (114)
T 1x5o_A 101 TEPLLCKFSGPS 112 (114)
T ss_dssp SSCBEEEECCCS
T ss_pred CCceeEEccCCC
Confidence 788999999865
No 257
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.64 E-value=6.2e-16 Score=126.57 Aligned_cols=77 Identities=22% Similarity=0.311 Sum_probs=69.5
Q ss_pred CCcEEEEeCCCCCCcHHHHH----HHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-ccccccCCeeEEEee
Q 017897 177 IRRTVYVSDIDQQVTEEQLA----TLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLP 251 (364)
Q Consensus 177 ~~~~lfV~nLp~~~te~~L~----~~F~~~G~i~~~~i~~d~~~~rG~aFV~F~~~~~A~~al~-l~g~~l~g~~i~V~~ 251 (364)
..++|||+|||+.+++++|+ ++|++||.|.+|.+..+ +.++|||||+|.+.++|.+|++ |||..+.|++|.|.|
T Consensus 28 p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~-~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~~ 106 (127)
T 2a3j_A 28 PSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLS-DDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVITF 106 (127)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCC-CSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccC-CCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEEE
Confidence 46899999999999999876 79999999999988653 4679999999999999999998 999999999999999
Q ss_pred CCC
Q 017897 252 SKT 254 (364)
Q Consensus 252 a~~ 254 (364)
++.
T Consensus 107 a~~ 109 (127)
T 2a3j_A 107 SET 109 (127)
T ss_dssp CCC
T ss_pred ccC
Confidence 863
No 258
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=1.7e-15 Score=117.13 Aligned_cols=75 Identities=33% Similarity=0.413 Sum_probs=67.9
Q ss_pred CCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHHccccccCCeeEEEeeCCC
Q 017897 177 IRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSKT 254 (364)
Q Consensus 177 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~~~~rG~aFV~F~~~~~A~~al~l~g~~l~g~~i~V~~a~~ 254 (364)
..++|||+|||.++++++|+++|+.||.|.+| +.++.+.+ ||||+|.+.++|.+|+++++..+.|++|.|.++..
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~-~afV~f~~~~~a~~ai~l~g~~~~g~~l~V~~a~~ 81 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV-FAIVEMGDVGAREAVLSQSQHSLGGHRLRVRPREQ 81 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC-EEEEEESSHHHHHHHHTCSCCEETTEECCCBCSCC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc-EEEEEECCHHHHHHHHhcCCeEECCEEEEEEECCc
Confidence 46799999999999999999999999999987 55555545 99999999999999999999999999999998754
No 259
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=4.7e-16 Score=119.97 Aligned_cols=80 Identities=24% Similarity=0.270 Sum_probs=70.0
Q ss_pred cCceEEEEeCCCCCCCHHHHHHHhhhcCCc-eeEEEEeccCCCCeeEEEEEecCHHHHHHHHh-cCC-CeeCCeeeEEee
Q 017897 273 MCSRTIYCTNIDKKVTQGDIKLFFESVCGE-VQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSG-AVLGSLPIRVSP 349 (364)
Q Consensus 273 ~~~~~l~V~nLp~~~tee~L~~~F~~~~G~-I~~v~i~~d~~~~kg~afV~F~~~e~A~~Al~-lng-~~~~g~~l~V~~ 349 (364)
...++|||+|||..+++++|+++|++| |. |..+.+. ++|||||+|.+.++|.+|+. ||| ..++|+.|+|.|
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-G~vv~~~~~~-----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ 79 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDR-KLPLAGQVLL-----KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDY 79 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHT-TCCCSSCEEE-----ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHc-CCceEEEEEc-----CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEE
Confidence 345899999999999999999999997 99 6666553 45799999999999999999 999 999999999999
Q ss_pred cCCCCCCCC
Q 017897 350 SKTPVRPRA 358 (364)
Q Consensus 350 ak~~~~~~~ 358 (364)
++++..+..
T Consensus 80 a~~~~~~~~ 88 (93)
T 2cqh_A 80 SVSKKLRSS 88 (93)
T ss_dssp CCCCCCCCC
T ss_pred ccCccccCC
Confidence 998755443
No 260
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.63 E-value=1.6e-15 Score=128.44 Aligned_cols=81 Identities=26% Similarity=0.270 Sum_probs=74.9
Q ss_pred CCCCCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEeCCHHHHHHHHH-ccccccCCeeEEEe
Q 017897 174 DEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVL 250 (364)
Q Consensus 174 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~~--~~rG~aFV~F~~~~~A~~al~-l~g~~l~g~~i~V~ 250 (364)
.....++|||+|||.++++++|+++|++||.|..|+|+.++. .++|||||+|.+.++|.+||+ |++..|.|++|.|.
T Consensus 35 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 114 (156)
T 1h2v_Z 35 LLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTD 114 (156)
T ss_dssp TTTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 334578999999999999999999999999999999999874 468999999999999999998 99999999999999
Q ss_pred eCCC
Q 017897 251 PSKT 254 (364)
Q Consensus 251 ~a~~ 254 (364)
|+..
T Consensus 115 ~a~~ 118 (156)
T 1h2v_Z 115 WDAG 118 (156)
T ss_dssp EESC
T ss_pred ECCC
Confidence 9864
No 261
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=3.2e-15 Score=116.69 Aligned_cols=80 Identities=26% Similarity=0.414 Sum_probs=71.9
Q ss_pred ccCceEEEEeCCCCCCCHHHHHHHhhhcC--CceeEEEEeccCCCCeeEEEEEecCHHHHHHHHh-cCCCeeCCeeeEEe
Q 017897 272 EMCSRTIYCTNIDKKVTQGDIKLFFESVC--GEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVS 348 (364)
Q Consensus 272 ~~~~~~l~V~nLp~~~tee~L~~~F~~~~--G~I~~v~i~~d~~~~kg~afV~F~~~e~A~~Al~-lng~~~~g~~l~V~ 348 (364)
....++|||+|||..+++++|+++|++ | |.|..|.++ +|||||+|.+.++|.+|+. |||..+.|+.|+|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~-~g~g~v~~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 84 (99)
T 2cpd_A 12 MSSVKILYVRNLMLSTSEEMIEKEFNN-IKPGAVERVKKI------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVT 84 (99)
T ss_dssp SSCCCEEEEESCCTTCCHHHHHHHHHT-TSTTCEEEEEEC------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEE
T ss_pred cCCcCEEEEeCCCCCCCHHHHHHHHHh-cCCcceEEEEEe------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 445789999999999999999999999 7 789999875 4599999999999999999 99999999999999
Q ss_pred ecCCCCCCCC
Q 017897 349 PSKTPVRPRA 358 (364)
Q Consensus 349 ~ak~~~~~~~ 358 (364)
|++++.+.+.
T Consensus 85 ~a~~~~~~~~ 94 (99)
T 2cpd_A 85 LAKPVDKDSS 94 (99)
T ss_dssp CCCCCCCCCC
T ss_pred ECCCCCCCCC
Confidence 9998765443
No 262
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.63 E-value=6e-16 Score=121.25 Aligned_cols=77 Identities=17% Similarity=0.217 Sum_probs=70.8
Q ss_pred ccCceEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccCCCCeeEEEEEecCHHHHHHHHh-cCCCeeCCeeeEEeec
Q 017897 272 EMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSPS 350 (364)
Q Consensus 272 ~~~~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~e~A~~Al~-lng~~~~g~~l~V~~a 350 (364)
....++|||+|||..+++++|+++|++| |.|.+|.+.+ ++|||||+|.+.++|.+|+. |||..++|+.|+|.|+
T Consensus 24 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~-G~i~~~~~~~----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 98 (101)
T 2la4_A 24 PPRVTTAYIGNIPHFATEADLIPLFQNF-GFILDFKHYP----EKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWG 98 (101)
T ss_dssp CSSCCEEEEESCCTTCCHHHHHHHHHTT-SCCSEEEEET----TTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBC
T ss_pred CCCCCEEEEcCCCcccCHHHHHHHHHhC-CCEEEEEEec----CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEec
Confidence 3446899999999999999999999997 9999999984 46799999999999999999 9999999999999998
Q ss_pred CCC
Q 017897 351 KTP 353 (364)
Q Consensus 351 k~~ 353 (364)
+++
T Consensus 99 ~~~ 101 (101)
T 2la4_A 99 KER 101 (101)
T ss_dssp CCC
T ss_pred cCC
Confidence 863
No 263
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=2e-15 Score=116.21 Aligned_cols=75 Identities=25% Similarity=0.352 Sum_probs=69.5
Q ss_pred CCCCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-ccccccCCeeEEEeeCC
Q 017897 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSK 253 (364)
Q Consensus 175 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~~~~rG~aFV~F~~~~~A~~al~-l~g~~l~g~~i~V~~a~ 253 (364)
....++|||+|||+++++++|+++|++||.|.++++++ +||||+|.+.++|.+|++ |++..+.|++|.|.+++
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 80 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK------DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLST 80 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS------SEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC------CEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEcc
Confidence 44578999999999999999999999999999999984 499999999999999997 99999999999999986
Q ss_pred CC
Q 017897 254 TA 255 (364)
Q Consensus 254 ~~ 255 (364)
..
T Consensus 81 ~~ 82 (92)
T 2dgt_A 81 SR 82 (92)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 264
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=1.3e-15 Score=119.38 Aligned_cols=78 Identities=21% Similarity=0.268 Sum_probs=69.5
Q ss_pred CCCCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCC-CCCceEEEEEeCCHHHHHHHHH-ccccccCCeeEEEeeC
Q 017897 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP-NSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPS 252 (364)
Q Consensus 175 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~-~~~rG~aFV~F~~~~~A~~al~-l~g~~l~g~~i~V~~a 252 (364)
....++|||+|||+++++++|+++|++||.| +++.+. +.++|||||+|.+.++|++|++ |++..+.|++|.|.++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 88 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQ 88 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEc
Confidence 4457899999999999999999999999987 556653 4579999999999999999998 9999999999999998
Q ss_pred CCC
Q 017897 253 KTA 255 (364)
Q Consensus 253 ~~~ 255 (364)
+..
T Consensus 89 ~~~ 91 (101)
T 2fc9_A 89 GPR 91 (101)
T ss_dssp SSC
T ss_pred CCC
Confidence 653
No 265
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=1.3e-15 Score=118.59 Aligned_cols=77 Identities=26% Similarity=0.371 Sum_probs=69.3
Q ss_pred CCCCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-ccccccCCeeEEEeeCC
Q 017897 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSK 253 (364)
Q Consensus 175 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~~~~rG~aFV~F~~~~~A~~al~-l~g~~l~g~~i~V~~a~ 253 (364)
....++|||+|||+++++++|+++|++||.|. +.++.+ .++|||||+|.+.++|.+|++ |+|..+.|++|.|.+++
T Consensus 16 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 92 (97)
T 2e5j_A 16 APLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ--GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALAR 92 (97)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE--TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECC
T ss_pred CCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC--CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 34568999999999999999999999999997 666654 567999999999999999997 99999999999999986
Q ss_pred C
Q 017897 254 T 254 (364)
Q Consensus 254 ~ 254 (364)
.
T Consensus 93 ~ 93 (97)
T 2e5j_A 93 Q 93 (97)
T ss_dssp C
T ss_pred C
Confidence 4
No 266
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.63 E-value=1.9e-16 Score=130.37 Aligned_cols=79 Identities=15% Similarity=0.193 Sum_probs=72.6
Q ss_pred CCCcEEEEeCCCCCCcHHHHHHHhhcCCCeeE--EEEecCC--CCCceEEEEEeCCHHHHHHHHH-cccc----ccCCee
Q 017897 176 VIRRTVYVSDIDQQVTEEQLATLFLTCGQVVD--CRICGDP--NSVLRFAFVEFTDEEGARAALS-LAGT----MLGFYP 246 (364)
Q Consensus 176 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~--~~i~~d~--~~~rG~aFV~F~~~~~A~~al~-l~g~----~l~g~~ 246 (364)
...++|||+|||+++|+++|+++|++||.|.. |+|++|+ +.+||||||+|.+. +|.+|+. |++. .+.|++
T Consensus 21 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~ 99 (131)
T 2m2b_A 21 NANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKT 99 (131)
T ss_dssp CCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEE
Confidence 45689999999999999999999999999977 9999998 45799999999999 9999998 9999 999999
Q ss_pred EEEeeCCCC
Q 017897 247 VRVLPSKTA 255 (364)
Q Consensus 247 i~V~~a~~~ 255 (364)
|.|.+++..
T Consensus 100 l~V~~a~~~ 108 (131)
T 2m2b_A 100 INVEFAKGS 108 (131)
T ss_dssp CCCEECCCS
T ss_pred EEEEECCCC
Confidence 999998653
No 267
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=1.3e-15 Score=116.76 Aligned_cols=75 Identities=25% Similarity=0.446 Sum_probs=69.5
Q ss_pred CCCCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-ccccccCCeeEEEeeCC
Q 017897 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSK 253 (364)
Q Consensus 175 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~~~~rG~aFV~F~~~~~A~~al~-l~g~~l~g~~i~V~~a~ 253 (364)
....++|||+|||+++++++|+++|++||.|.++++++ +||||+|.+.++|.+|++ |++..+.|++|.|.+++
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 79 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK------DYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELST 79 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS------SCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC------CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECC
Confidence 44578999999999999999999999999999999984 499999999999999998 99999999999999986
Q ss_pred CC
Q 017897 254 TA 255 (364)
Q Consensus 254 ~~ 255 (364)
..
T Consensus 80 ~~ 81 (90)
T 2dnp_A 80 KG 81 (90)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 268
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=6.2e-16 Score=123.61 Aligned_cols=75 Identities=16% Similarity=0.142 Sum_probs=69.3
Q ss_pred CCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-ccccccCCeeEEEeeCCCC
Q 017897 177 IRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSKTA 255 (364)
Q Consensus 177 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~~~~rG~aFV~F~~~~~A~~al~-l~g~~l~g~~i~V~~a~~~ 255 (364)
..++|||+|||+++++++|+++|++||.|.+|.++. ++|||||+|.+.++|.+|++ |||..+.|++|.|.|+...
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 84 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE----GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIG 84 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS----SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEETT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC----CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence 357999999999999999999999999999999875 46899999999999999998 9999999999999998653
No 269
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.63 E-value=5.4e-16 Score=120.51 Aligned_cols=81 Identities=16% Similarity=0.250 Sum_probs=70.5
Q ss_pred ccCceEEEEeCCCC-CCCHHHHHHHhhhcCCceeEEEEeccCCCCeeEEEEEecCHHHHHHHHh-cCCCeeCCeeeEEee
Q 017897 272 EMCSRTIYCTNIDK-KVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSP 349 (364)
Q Consensus 272 ~~~~~~l~V~nLp~-~~tee~L~~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~e~A~~Al~-lng~~~~g~~l~V~~ 349 (364)
..+.++|||+|||. .+++++|+++|++| |.|.+|.+. +|||||+|.+.++|.+|+. |||..+.|++|+|.|
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~-G~v~~v~i~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 79 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPY-GHIMQINIK------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEV 79 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTT-CCCCEEEEE------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhc-CCEEEEEEe------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 34578999999998 99999999999997 999999995 4699999999999999999 999999999999999
Q ss_pred cCCCCCCCCC
Q 017897 350 SKTPVRPRAP 359 (364)
Q Consensus 350 ak~~~~~~~~ 359 (364)
+++..+++..
T Consensus 80 a~~~~~~~~~ 89 (96)
T 2kvi_A 80 SSSNARPQFD 89 (96)
T ss_dssp EECCCC----
T ss_pred cCcCCCCCCC
Confidence 9887665543
No 270
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.63 E-value=1e-15 Score=121.75 Aligned_cols=76 Identities=29% Similarity=0.464 Sum_probs=69.8
Q ss_pred cCCCCCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-ccccccCCeeEEEee
Q 017897 173 QDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLP 251 (364)
Q Consensus 173 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~~~~rG~aFV~F~~~~~A~~al~-l~g~~l~g~~i~V~~ 251 (364)
......++|||+|||.++++++|+++|++||.|.+++++ +|||||+|.+.++|.+|++ |+|..+.|++|.|.+
T Consensus 26 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 99 (108)
T 2jvo_A 26 EGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVY 99 (108)
T ss_dssp --CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEES
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 345567899999999999999999999999999999998 5899999999999999998 999999999999999
Q ss_pred CCC
Q 017897 252 SKT 254 (364)
Q Consensus 252 a~~ 254 (364)
++.
T Consensus 100 a~~ 102 (108)
T 2jvo_A 100 SKL 102 (108)
T ss_dssp CSC
T ss_pred ecC
Confidence 864
No 271
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.63 E-value=2.4e-16 Score=125.10 Aligned_cols=79 Identities=15% Similarity=0.085 Sum_probs=73.0
Q ss_pred CCCCcEEEEeCCCCCCcHHHHHHHhhcCCC---eeEEEEecCC-CCCceEEEEEeCCHHHHHHHHHccccccCCeeEEEe
Q 017897 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQ---VVDCRICGDP-NSVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVL 250 (364)
Q Consensus 175 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~---i~~~~i~~d~-~~~rG~aFV~F~~~~~A~~al~l~g~~l~g~~i~V~ 250 (364)
....++|||+|||+++|+++|+++|+.||. |.+|+|+.++ +.++|||||+|.+.++|.+||++++..++|+.|.|.
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~ 87 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVY 87 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHTTTTCCSSSSCCCCE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCcceeCCeEEEEE
Confidence 445789999999999999999999999988 8999999887 467999999999999999999999999999999999
Q ss_pred eCC
Q 017897 251 PSK 253 (364)
Q Consensus 251 ~a~ 253 (364)
++.
T Consensus 88 ~a~ 90 (107)
T 2lmi_A 88 EIN 90 (107)
T ss_dssp ECC
T ss_pred ECC
Confidence 975
No 272
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=5.6e-16 Score=124.39 Aligned_cols=82 Identities=18% Similarity=0.109 Sum_probs=75.0
Q ss_pred ccCceEEEEeCCCCCCCHHHHHHHhhhcCCce-eEEEEeccC-CCCeeEEEEEecCHHHHHHHHhcCCCeeCCeeeEEee
Q 017897 272 EMCSRTIYCTNIDKKVTQGDIKLFFESVCGEV-QRLRLLGDY-QHSTRIAFVEFAMAESAIAALNCSGAVLGSLPIRVSP 349 (364)
Q Consensus 272 ~~~~~~l~V~nLp~~~tee~L~~~F~~~~G~I-~~v~i~~d~-~~~kg~afV~F~~~e~A~~Al~lng~~~~g~~l~V~~ 349 (364)
....++|||+|||..+++++|+++|++| |.| ..|.|+++. +.++|||||+|.+.++|.+||.+|+..|+|+.|+|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~-g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~v~~ 90 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGI-PVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLHRKKLNGREAFVHV 90 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTS-CCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGGCSEEETTEEEEEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhC-CCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHhCCCccCCeEEEEEE
Confidence 3456899999999999999999999997 999 899999886 6789999999999999999999999999999999999
Q ss_pred cCCCC
Q 017897 350 SKTPV 354 (364)
Q Consensus 350 ak~~~ 354 (364)
+.+..
T Consensus 91 a~~~~ 95 (114)
T 2cpy_A 91 VTLED 95 (114)
T ss_dssp ECHHH
T ss_pred CCHHH
Confidence 86543
No 273
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.63 E-value=1.6e-15 Score=118.10 Aligned_cols=75 Identities=17% Similarity=0.323 Sum_probs=68.8
Q ss_pred CCCCCcEEEEeCCCC-CCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-ccccccCCeeEEEee
Q 017897 174 DEVIRRTVYVSDIDQ-QVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLP 251 (364)
Q Consensus 174 ~~~~~~~lfV~nLp~-~~te~~L~~~F~~~G~i~~~~i~~d~~~~rG~aFV~F~~~~~A~~al~-l~g~~l~g~~i~V~~ 251 (364)
.....++|||+|||. ++++++|+++|+.||.|.++++. +|||||+|.+.++|.+|++ ++|..+.|++|.|.+
T Consensus 18 ~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 91 (97)
T 2xnq_A 18 GSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEV 91 (97)
T ss_dssp -CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC------SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEE
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 344578999999998 99999999999999999999984 6899999999999999998 999999999999999
Q ss_pred CCC
Q 017897 252 SKT 254 (364)
Q Consensus 252 a~~ 254 (364)
++.
T Consensus 92 a~~ 94 (97)
T 2xnq_A 92 SSS 94 (97)
T ss_dssp CCC
T ss_pred cCC
Confidence 853
No 274
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=1.9e-15 Score=121.17 Aligned_cols=83 Identities=22% Similarity=0.283 Sum_probs=73.0
Q ss_pred ccCceEEEEeCCCCCCCHHHHHHHhhhcCCce----eEEEEeccCCCCeeEEEEEecCHHHHHHHHh-cCCCeeCCeeeE
Q 017897 272 EMCSRTIYCTNIDKKVTQGDIKLFFESVCGEV----QRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIR 346 (364)
Q Consensus 272 ~~~~~~l~V~nLp~~~tee~L~~~F~~~~G~I----~~v~i~~d~~~~kg~afV~F~~~e~A~~Al~-lng~~~~g~~l~ 346 (364)
..+.++|||+|||..+++++|+++|++| |.| ..+.+. .+.++|||||+|.+.++|.+|+. |||..+.|+.|+
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~-G~v~~~~~~~~~~--~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~ 98 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARF-QEKKGPPIQFRMM--TGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILV 98 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHH-HHSSSSCCEEEEE--CSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHh-CCccceEEEEEcC--CCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEE
Confidence 3456899999999999999999999997 998 455554 46789999999999999999999 999999999999
Q ss_pred EeecCCCCCCC
Q 017897 347 VSPSKTPVRPR 357 (364)
Q Consensus 347 V~~ak~~~~~~ 357 (364)
|.|++++..+.
T Consensus 99 v~~a~~~~~~~ 109 (115)
T 2cpx_A 99 IEFGKNKKQRS 109 (115)
T ss_dssp EEECCCCSCCC
T ss_pred EEEccCCCCCC
Confidence 99999875443
No 275
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=2.1e-15 Score=118.31 Aligned_cols=83 Identities=20% Similarity=0.268 Sum_probs=72.5
Q ss_pred ccCceEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccC--CCCeeEEEEEecCHHHHHHHHh-cCCCeeCCeeeEEe
Q 017897 272 EMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVS 348 (364)
Q Consensus 272 ~~~~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~--~~~kg~afV~F~~~e~A~~Al~-lng~~~~g~~l~V~ 348 (364)
....++|||+|||..+++++|+++|++| + .|.++.+. +.++|||||+|.+.++|.+||. ||+..|.|+.|+|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~-~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 87 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEETLKESFDGS-V---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLD 87 (102)
T ss_dssp SCCCSSEEEECCCTTCCHHHHHHTSTTC-S---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCccCHHHHHHHhcCC-e---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 4456899999999999999999999986 4 55666653 6789999999999999999999 99999999999999
Q ss_pred ecCCCCCCCC
Q 017897 349 PSKTPVRPRA 358 (364)
Q Consensus 349 ~ak~~~~~~~ 358 (364)
|++++..+..
T Consensus 88 ~a~~~~~~~~ 97 (102)
T 2fc8_A 88 WAKPKGEGGS 97 (102)
T ss_dssp ECCCCCSSSC
T ss_pred EecCCCCCCC
Confidence 9998765443
No 276
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.62 E-value=9.7e-16 Score=123.84 Aligned_cols=79 Identities=16% Similarity=0.143 Sum_probs=73.0
Q ss_pred cCceEEEEeCCCCCCCHHHHHHHhhhcCCc---eeEEEEeccC-CCCeeEEEEEecCHHHHHHHHhcCCCeeCCeeeEEe
Q 017897 273 MCSRTIYCTNIDKKVTQGDIKLFFESVCGE---VQRLRLLGDY-QHSTRIAFVEFAMAESAIAALNCSGAVLGSLPIRVS 348 (364)
Q Consensus 273 ~~~~~l~V~nLp~~~tee~L~~~F~~~~G~---I~~v~i~~d~-~~~kg~afV~F~~~e~A~~Al~lng~~~~g~~l~V~ 348 (364)
...++|||+|||+.+++++|+++|++| |. |..|+|+++. ++++|||||+|.+.++|.+||.+|+..|+|+.|+|.
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~-G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V~ 93 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDC-TIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALKKDRESMGHRYIEVF 93 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTS-CBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGGGTTEEETTEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHc-CCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEE
Confidence 346899999999999999999999996 98 8999999875 789999999999999999999999999999999999
Q ss_pred ecCC
Q 017897 349 PSKT 352 (364)
Q Consensus 349 ~ak~ 352 (364)
++..
T Consensus 94 ~a~~ 97 (118)
T 2db1_A 94 KSHR 97 (118)
T ss_dssp EECH
T ss_pred ECCH
Confidence 8743
No 277
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=5.2e-16 Score=123.84 Aligned_cols=76 Identities=17% Similarity=0.173 Sum_probs=68.0
Q ss_pred CCCCcEEEEeCCCCC-CcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-ccc--cccCCeeEEEe
Q 017897 175 EVIRRTVYVSDIDQQ-VTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAG--TMLGFYPVRVL 250 (364)
Q Consensus 175 ~~~~~~lfV~nLp~~-~te~~L~~~F~~~G~i~~~~i~~d~~~~rG~aFV~F~~~~~A~~al~-l~g--~~l~g~~i~V~ 250 (364)
....++|||+|||++ +++++|+++|++||.|.+|+|++. ||||||+|.+.++|.+|++ |++ ..+.|++|.|.
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~----kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~ 97 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRM----KSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVD 97 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETT----TTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecC----CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 334789999999998 999999999999999999999854 6899999999999999998 764 55999999999
Q ss_pred eCCC
Q 017897 251 PSKT 254 (364)
Q Consensus 251 ~a~~ 254 (364)
+++.
T Consensus 98 ~a~~ 101 (112)
T 1x4f_A 98 LSEK 101 (112)
T ss_dssp EECS
T ss_pred ECcc
Confidence 9864
No 278
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=3.5e-16 Score=116.10 Aligned_cols=73 Identities=21% Similarity=0.283 Sum_probs=69.0
Q ss_pred eEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccC--CCCeeEEEEEecCHHHHHHHHh-cCCCeeCCeeeEEeec
Q 017897 276 RTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSPS 350 (364)
Q Consensus 276 ~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~--~~~kg~afV~F~~~e~A~~Al~-lng~~~~g~~l~V~~a 350 (364)
++|||+|||..+++++|+++|++| |.|.++.+++++ +.++|||||+|.+.++|.+|+. ++ ..++|++|+|.|+
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~-G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQF-GEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTT-SCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhc-CCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 479999999999999999999997 999999999885 6889999999999999999999 88 9999999999986
No 279
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=1.1e-15 Score=119.02 Aligned_cols=79 Identities=24% Similarity=0.370 Sum_probs=70.7
Q ss_pred ccCceEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccCCCCeeEEEEEecCHHHHHHHHh-cCCCeeCCeeeEEeec
Q 017897 272 EMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSPS 350 (364)
Q Consensus 272 ~~~~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~e~A~~Al~-lng~~~~g~~l~V~~a 350 (364)
....++|||+|||..+++++|+++|++| |.|. +.++.+ .++|||||+|.+.++|.+|+. |||..++|+.|+|.|+
T Consensus 16 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~-G~v~-~~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 91 (97)
T 2e5j_A 16 APLAADVYVGNLPRDARVSDLKRALREL-GSVP-LRLTWQ--GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALA 91 (97)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHHT-TCCC-SEEEEE--TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEEC
T ss_pred CCCCCEEEEeCCCCcCcHHHHHHHHHhc-CCEE-EEEEcC--CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 3446899999999999999999999997 9997 666654 577899999999999999999 9999999999999999
Q ss_pred CCCC
Q 017897 351 KTPV 354 (364)
Q Consensus 351 k~~~ 354 (364)
+++.
T Consensus 92 ~~~~ 95 (97)
T 2e5j_A 92 RQQR 95 (97)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8763
No 280
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=2.3e-15 Score=113.90 Aligned_cols=74 Identities=19% Similarity=0.375 Sum_probs=69.2
Q ss_pred cCceEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccCCCCeeEEEEEecCHHHHHHHHh-c-CCCeeCCeeeEEeec
Q 017897 273 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-C-SGAVLGSLPIRVSPS 350 (364)
Q Consensus 273 ~~~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~e~A~~Al~-l-ng~~~~g~~l~V~~a 350 (364)
...++|||+|||..+++++|+++|++| |.|..|.++++ +|||||+|.+.++|.+|+. | ++..++|++|+|.|+
T Consensus 10 ~~~~~l~V~~l~~~~t~~~l~~~f~~~-G~i~~~~~~~~----kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~a 84 (85)
T 2ytc_A 10 KTITTLYVGGLGDTITETDLRNHFYQF-GEIRTITVVQR----QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWG 84 (85)
T ss_dssp SSCCCEEEECCTTTSCHHHHHHHHHTT-SCEEEEEEEGG----GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEEC
T ss_pred CCccEEEEcCCCCCCCHHHHHHHHHhC-CCEeEEEEECC----CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEec
Confidence 456899999999999999999999997 99999999985 5699999999999999999 8 999999999999998
Q ss_pred C
Q 017897 351 K 351 (364)
Q Consensus 351 k 351 (364)
+
T Consensus 85 k 85 (85)
T 2ytc_A 85 R 85 (85)
T ss_dssp C
T ss_pred C
Confidence 5
No 281
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.62 E-value=2.7e-15 Score=124.33 Aligned_cols=78 Identities=27% Similarity=0.436 Sum_probs=72.6
Q ss_pred ccCceEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccC--CCCeeEEEEEecCHHHHHHHHh-cCCCeeCCeeeEEe
Q 017897 272 EMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVS 348 (364)
Q Consensus 272 ~~~~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~--~~~kg~afV~F~~~e~A~~Al~-lng~~~~g~~l~V~ 348 (364)
....++|||+|||..+++++|+++|++| |.|..|.+++++ +.++|||||+|.+.++|.+|+. |||..|+|+.|+|.
T Consensus 60 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~-G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 138 (140)
T 2ku7_A 60 ATTKRVLYVGGLAEEVDDKVLHAAFIPF-GDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 138 (140)
T ss_dssp CSSCCEEEEECCCTTCCHHHHHHHHGGG-SCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEE
T ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHHhc-CCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 4567999999999999999999999997 999999999874 6789999999999999999998 99999999999999
Q ss_pred ec
Q 017897 349 PS 350 (364)
Q Consensus 349 ~a 350 (364)
||
T Consensus 139 ~A 140 (140)
T 2ku7_A 139 LA 140 (140)
T ss_dssp C-
T ss_pred eC
Confidence 86
No 282
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.62 E-value=1.7e-16 Score=131.94 Aligned_cols=79 Identities=23% Similarity=0.204 Sum_probs=71.4
Q ss_pred CCCCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCC-CCCceEEEEEeCCHHHHHHHHHccccccCCeeEEEeeCC
Q 017897 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP-NSVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSK 253 (364)
Q Consensus 175 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~-~~~rG~aFV~F~~~~~A~~al~l~g~~l~g~~i~V~~a~ 253 (364)
....++|||+|||+++|+++|+++|++|| |++|+|+.|+ ++++|||||+|.++++|++||++++..|.|+.|.|.++.
T Consensus 43 ~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al~~~g~~l~gR~i~V~~a~ 121 (139)
T 2hgn_A 43 STTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELFLNS 121 (139)
T ss_dssp --CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHTTCCSCSSSSCCCCCEECC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHHhhCCCEECCEEEEEEECC
Confidence 34567899999999999999999999999 7799999887 457999999999999999999999999999999999875
Q ss_pred C
Q 017897 254 T 254 (364)
Q Consensus 254 ~ 254 (364)
.
T Consensus 122 ~ 122 (139)
T 2hgn_A 122 T 122 (139)
T ss_dssp C
T ss_pred C
Confidence 4
No 283
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.62 E-value=1.7e-16 Score=131.97 Aligned_cols=124 Identities=20% Similarity=0.116 Sum_probs=74.2
Q ss_pred eEEEEEeCCHHHHHHHHH-ccccccCCeeEEEeeCCCCCCCCCCCCCCCCccccccCceEEEEeCCCCCCCHHHHHHHhh
Q 017897 219 RFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFE 297 (364)
Q Consensus 219 G~aFV~F~~~~~A~~al~-l~g~~l~g~~i~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~ 297 (364)
|+||.+|..++.+..++. +.. ...|...--... ...........++|||+|||+.+++++|+++|+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~-~~gg~~~g~~~g------------~~~~~~~~~~~~~lfV~nLp~~~te~dL~~~F~ 68 (139)
T 2hgn_A 2 GSSHHHHHHSSGLVPRGSHMAS-MTGGQQMGRGSG------------DSEFTVQSTTGHCVHMRGLPYKATENDIYNFFS 68 (139)
T ss_dssp --------------------------------------------------------CCCCEECCSCCTTCCHHHHHHHHC
T ss_pred CcccccccCccccchhcccchh-ccCCCCCCCCCC------------CcccCCCCCCCCEEEEeCCCCCCCHHHHHHHHH
Confidence 688888888877777765 322 223322211110 001111234568999999999999999999999
Q ss_pred hcCCceeEEEEeccC-CCCeeEEEEEecCHHHHHHHHhcCCCeeCCeeeEEeecCCCCCCC
Q 017897 298 SVCGEVQRLRLLGDY-QHSTRIAFVEFAMAESAIAALNCSGAVLGSLPIRVSPSKTPVRPR 357 (364)
Q Consensus 298 ~~~G~I~~v~i~~d~-~~~kg~afV~F~~~e~A~~Al~lng~~~~g~~l~V~~ak~~~~~~ 357 (364)
+| | |.+|.|++++ ++++|||||+|.+.++|.+||.+|+..|+|+.|+|.++.++....
T Consensus 69 ~~-G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al~~~g~~l~gR~i~V~~a~~~~~~~ 127 (139)
T 2hgn_A 69 PL-N-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELFLNSTTGASN 127 (139)
T ss_dssp SC-C-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHTTCCSCSSSSCCCCCEECCCSCC--
T ss_pred hc-C-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHHhhCCCEECCEEEEEEECCCCCCCC
Confidence 97 9 7799999876 789999999999999999999999999999999999998765543
No 284
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.62 E-value=2.8e-15 Score=117.96 Aligned_cols=73 Identities=23% Similarity=0.414 Sum_probs=68.5
Q ss_pred CCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-ccccccCCeeEEEeeCCCC
Q 017897 177 IRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSKTA 255 (364)
Q Consensus 177 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~~~~rG~aFV~F~~~~~A~~al~-l~g~~l~g~~i~V~~a~~~ 255 (364)
..++|||+|||+++++++|+++|++||.|.+|++++ |||||+|.+.++|.+|++ |++..|.|++|.|.++...
T Consensus 10 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 83 (103)
T 2dgu_A 10 KVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLK------DYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPP 83 (103)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECS------SCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC------CEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCCC
Confidence 468999999999999999999999999999999873 699999999999999998 9999999999999998754
No 285
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=1.6e-15 Score=118.43 Aligned_cols=78 Identities=15% Similarity=0.213 Sum_probs=72.1
Q ss_pred ccCceEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccCCCCeeEEEEEecCHHHHHHHHh-cCCCeeCCeeeEEeec
Q 017897 272 EMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSPS 350 (364)
Q Consensus 272 ~~~~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~e~A~~Al~-lng~~~~g~~l~V~~a 350 (364)
....++|||+|||..+++++|+++|++| |.|..|.++++ +|||||+|.+.++|.+|+. |||..++|++|+|.|+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~-G~i~~v~~~~~----kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 86 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKY-GKAGEVFIHKD----KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFA 86 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTT-CCCSEEEEETT----TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEES
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhc-CCeEEEEEecC----CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEc
Confidence 3456899999999999999999999997 99999999875 4699999999999999998 9999999999999999
Q ss_pred CCCC
Q 017897 351 KTPV 354 (364)
Q Consensus 351 k~~~ 354 (364)
+++.
T Consensus 87 ~~~~ 90 (99)
T 2cpj_A 87 CHSA 90 (99)
T ss_dssp SCCS
T ss_pred CCCC
Confidence 8864
No 286
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1.9e-15 Score=119.29 Aligned_cols=81 Identities=25% Similarity=0.244 Sum_probs=73.8
Q ss_pred cCceEEEEeCCCCCCCHHHHHHHhhhcCCceeE-EEEeccC-CCCeeEEEEEecCHHHHHHHHhcCCCeeCCeeeEEeec
Q 017897 273 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQR-LRLLGDY-QHSTRIAFVEFAMAESAIAALNCSGAVLGSLPIRVSPS 350 (364)
Q Consensus 273 ~~~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~-v~i~~d~-~~~kg~afV~F~~~e~A~~Al~lng~~~~g~~l~V~~a 350 (364)
...++|||+|||+.+++++|+++|++| |.|.. |.|+.+. ++++|||||+|.+.++|.+||..|+..++|+.|+|.++
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~-G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~~~~~~~gr~i~v~~~ 91 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGL-EIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKS 91 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTC-CEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTTTTCCSSSSCCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc-CCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHhCcchhCCcEEEEEEC
Confidence 345899999999999999999999996 99987 8888774 78999999999999999999999999999999999998
Q ss_pred CCCC
Q 017897 351 KTPV 354 (364)
Q Consensus 351 k~~~ 354 (364)
.+..
T Consensus 92 ~~~~ 95 (104)
T 1wg5_A 92 SRAE 95 (104)
T ss_dssp CTTT
T ss_pred CHHH
Confidence 7654
No 287
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=5e-15 Score=115.57 Aligned_cols=74 Identities=27% Similarity=0.405 Sum_probs=68.3
Q ss_pred CCCcEEEEeCCCCCCcHHHHHHHhhcC--CCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-ccccccCCeeEEEeeC
Q 017897 176 VIRRTVYVSDIDQQVTEEQLATLFLTC--GQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPS 252 (364)
Q Consensus 176 ~~~~~lfV~nLp~~~te~~L~~~F~~~--G~i~~~~i~~d~~~~rG~aFV~F~~~~~A~~al~-l~g~~l~g~~i~V~~a 252 (364)
...++|||+|||+++++++|+++|++| |.|.+++++ +|||||+|.+.++|.+|++ |++..+.|++|.|.++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 86 (99)
T 2cpd_A 13 SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLA 86 (99)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECC
T ss_pred CCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 346899999999999999999999999 999999875 4799999999999999998 9999999999999998
Q ss_pred CCC
Q 017897 253 KTA 255 (364)
Q Consensus 253 ~~~ 255 (364)
+..
T Consensus 87 ~~~ 89 (99)
T 2cpd_A 87 KPV 89 (99)
T ss_dssp CCC
T ss_pred CCC
Confidence 653
No 288
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.61 E-value=7.8e-16 Score=119.53 Aligned_cols=80 Identities=26% Similarity=0.382 Sum_probs=72.8
Q ss_pred cCceEEEEeCCCCCCCHHHHH----HHhhhcCCceeEEEEeccCCCCeeEEEEEecCHHHHHHHHh-cCCCeeCCeeeEE
Q 017897 273 MCSRTIYCTNIDKKVTQGDIK----LFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRV 347 (364)
Q Consensus 273 ~~~~~l~V~nLp~~~tee~L~----~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~e~A~~Al~-lng~~~~g~~l~V 347 (364)
.+.++|||+|||..+++++|+ ++|++| |.|..|.+++. +.++|||||+|.+.++|.+|+. |||..++|+.|+|
T Consensus 6 ~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~-G~i~~v~i~~~-~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 83 (97)
T 1nu4_A 6 RPNHTIYINNLNEKIKKDELKKSLHAIFSRF-GQILDILVSRS-LKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRI 83 (97)
T ss_dssp CCCSEEEEESCCTTSCHHHHHHHHHHHHGGG-SCEEEEECCHH-HHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhC-CCEEEEEEEcC-CCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEE
Confidence 356899999999999999999 999997 99999998742 4567899999999999999999 9999999999999
Q ss_pred eecCCCC
Q 017897 348 SPSKTPV 354 (364)
Q Consensus 348 ~~ak~~~ 354 (364)
.|++++.
T Consensus 84 ~~a~~~~ 90 (97)
T 1nu4_A 84 QYAKTDS 90 (97)
T ss_dssp EECSSCC
T ss_pred EEccCCC
Confidence 9998864
No 289
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.61 E-value=7.4e-16 Score=125.76 Aligned_cols=78 Identities=23% Similarity=0.288 Sum_probs=70.4
Q ss_pred CCCCcEEEEeCCCCCCcHHHHHHHhhcCCCee--EEEEecCC-CCCceEEEEEeCCHHHHHHHHHccccccCCeeEEEee
Q 017897 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVV--DCRICGDP-NSVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLP 251 (364)
Q Consensus 175 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~--~~~i~~d~-~~~rG~aFV~F~~~~~A~~al~l~g~~l~g~~i~V~~ 251 (364)
....++|||+|||+++|+++|+++|+.| .|+ +|+|+.|+ ++++|||||+|.++++|++||++++..|.|+.|.|.+
T Consensus 39 ~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~~~~~l~gR~I~V~~ 117 (126)
T 2hgm_A 39 SANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFK 117 (126)
T ss_dssp SSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTTTTCCBTTBCCCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHHCCCEECCEEEEEEE
Confidence 3456889999999999999999999999 677 89999887 4579999999999999999999788999999999988
Q ss_pred CC
Q 017897 252 SK 253 (364)
Q Consensus 252 a~ 253 (364)
+.
T Consensus 118 a~ 119 (126)
T 2hgm_A 118 SS 119 (126)
T ss_dssp EC
T ss_pred CC
Confidence 64
No 290
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.61 E-value=1.7e-15 Score=116.16 Aligned_cols=76 Identities=25% Similarity=0.345 Sum_probs=63.1
Q ss_pred CCCCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHHccccccCCeeEEEeeCCC
Q 017897 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSKT 254 (364)
Q Consensus 175 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~~~~rG~aFV~F~~~~~A~~al~l~g~~l~g~~i~V~~a~~ 254 (364)
+....+|||+|||+++|+++|+++|++||.|.+|+|+.+ +||||||+|.++++|+++... ...+.|+.|.|.++.+
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~---srGfaFV~F~~~~~A~~~~~~-~~~~~g~~v~v~~a~~ 83 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP---FRAFAFVTFADDKVAQSLCGE-DLIIKGISVHISNAEP 83 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS---CCSEEEEEESCHHHHHHHTTC-EEEETTEEEEEEECC-
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC---CCCEEEEEECCHHHHHHHcCC-CcccCCEEEEEEEcCC
Confidence 345689999999999999999999999999999999985 689999999999999853322 3345699999999854
No 291
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.61 E-value=4.8e-16 Score=120.73 Aligned_cols=78 Identities=24% Similarity=0.415 Sum_probs=70.9
Q ss_pred CCCcEEEEeCCCCCCcHHHHH----HHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-ccccccCCeeEEEe
Q 017897 176 VIRRTVYVSDIDQQVTEEQLA----TLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVL 250 (364)
Q Consensus 176 ~~~~~lfV~nLp~~~te~~L~----~~F~~~G~i~~~~i~~d~~~~rG~aFV~F~~~~~A~~al~-l~g~~l~g~~i~V~ 250 (364)
...++|||+|||.++++++|+ ++|++||.|.+++++.+ +.++|||||+|.+.++|.+|++ |+|..+.|++|.|.
T Consensus 6 ~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~-~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 84 (97)
T 1nu4_A 6 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRS-LKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQ 84 (97)
T ss_dssp CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHH-HHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcC-CCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 456899999999999999999 99999999999998742 3457999999999999999998 99999999999999
Q ss_pred eCCC
Q 017897 251 PSKT 254 (364)
Q Consensus 251 ~a~~ 254 (364)
+++.
T Consensus 85 ~a~~ 88 (97)
T 1nu4_A 85 YAKT 88 (97)
T ss_dssp ECSS
T ss_pred EccC
Confidence 9864
No 292
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.61 E-value=4.7e-16 Score=121.85 Aligned_cols=81 Identities=15% Similarity=0.194 Sum_probs=72.3
Q ss_pred cCceEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccC--CCCeeEEEEEecCHHHHHHHHhcCCCeeCCeeeEEeec
Q 017897 273 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALNCSGAVLGSLPIRVSPS 350 (364)
Q Consensus 273 ~~~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~--~~~kg~afV~F~~~e~A~~Al~lng~~~~g~~l~V~~a 350 (364)
...++|||+|||..+++++|+++|++| |.|.. .++.+. +.++|||||+|.+.++|.+||.|||..+.|+.|+|.|+
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a 92 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISEL-FAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKP 92 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHH-HHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGCCBTTBCCEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHh-CCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHhcCCcEECCcEEEEEEc
Confidence 356899999999999999999999997 99888 555553 67899999999999999999999999999999999999
Q ss_pred CCCCC
Q 017897 351 KTPVR 355 (364)
Q Consensus 351 k~~~~ 355 (364)
+++..
T Consensus 93 ~~~~~ 97 (101)
T 1fj7_A 93 KGRDG 97 (101)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 87643
No 293
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=2.1e-15 Score=120.47 Aligned_cols=79 Identities=19% Similarity=0.182 Sum_probs=71.7
Q ss_pred CceEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccCCCCeeEEEEEecCHHHHHHHHh-cCCCeeCCeeeEEeecCC
Q 017897 274 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSPSKT 352 (364)
Q Consensus 274 ~~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~e~A~~Al~-lng~~~~g~~l~V~~ak~ 352 (364)
..++|||+|||..+++++|+++|++| |.|.+|.|++ ++|||||+|.+.++|.+|+. |||..+.|+.|+|.|++.
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~-G~i~~v~i~~----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 83 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRF-GSLGRVLLPE----GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPI 83 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTT-SCEEEEECCS----SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEET
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhc-CCEEEEEEeC----CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 45899999999999999999999997 9999999876 45699999999999999999 999999999999999987
Q ss_pred CCCCC
Q 017897 353 PVRPR 357 (364)
Q Consensus 353 ~~~~~ 357 (364)
.....
T Consensus 84 ~~~~~ 88 (111)
T 1whx_A 84 GVFGA 88 (111)
T ss_dssp TTTCC
T ss_pred CccCC
Confidence 55433
No 294
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.61 E-value=4.4e-16 Score=115.05 Aligned_cols=73 Identities=16% Similarity=0.298 Sum_probs=68.8
Q ss_pred EEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccC--CCCeeEEEEEecCHHHHHHHHhcCCCeeCCeeeEEeec
Q 017897 277 TIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALNCSGAVLGSLPIRVSPS 350 (364)
Q Consensus 277 ~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~--~~~kg~afV~F~~~e~A~~Al~lng~~~~g~~l~V~~a 350 (364)
+|||+|||..+++++|+++|++| |.|.+|.++++. +.++|||||+|.+.++|.+|+.+++..++|+.|+|.++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~-G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGF-GEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHH-SCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTTSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhc-CCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEC
Confidence 58999999999999999999997 999999999875 67899999999999999999998899999999999885
No 295
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.61 E-value=1.2e-15 Score=118.42 Aligned_cols=73 Identities=18% Similarity=0.308 Sum_probs=68.0
Q ss_pred CCCcEEEEeCCCC-CCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-ccccccCCeeEEEeeCC
Q 017897 176 VIRRTVYVSDIDQ-QVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSK 253 (364)
Q Consensus 176 ~~~~~lfV~nLp~-~~te~~L~~~F~~~G~i~~~~i~~d~~~~rG~aFV~F~~~~~A~~al~-l~g~~l~g~~i~V~~a~ 253 (364)
...++|||+|||+ .+++++|+++|++||.|.++++. +|||||+|.+.++|.+|++ |++..+.|++|.|.++.
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 81 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSS 81 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcC
Confidence 3578999999998 99999999999999999999995 5899999999999999998 99999999999999986
Q ss_pred C
Q 017897 254 T 254 (364)
Q Consensus 254 ~ 254 (364)
.
T Consensus 82 ~ 82 (96)
T 2kvi_A 82 S 82 (96)
T ss_dssp C
T ss_pred c
Confidence 4
No 296
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=4.5e-16 Score=126.85 Aligned_cols=79 Identities=20% Similarity=0.225 Sum_probs=70.2
Q ss_pred CCCCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCC--CCCceEEEEEeCCHHHHHHHHHccccccCCeeEEEeeC
Q 017897 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP--NSVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPS 252 (364)
Q Consensus 175 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~--~~~rG~aFV~F~~~~~A~~al~l~g~~l~g~~i~V~~a 252 (364)
....++|||+|||+++|+++|+++|+.||.|.++.++.+. +.++|||||+|.+.++|.+||++++..|.|+.|.|.++
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V~~a 101 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHPI 101 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHTSCSBCSTTSCBEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEEC
Confidence 3456899999999999999999999999999885555543 45699999999999999999999999999999999997
Q ss_pred C
Q 017897 253 K 253 (364)
Q Consensus 253 ~ 253 (364)
.
T Consensus 102 ~ 102 (124)
T 1wel_A 102 T 102 (124)
T ss_dssp C
T ss_pred C
Confidence 4
No 297
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=2.5e-15 Score=120.44 Aligned_cols=78 Identities=23% Similarity=0.302 Sum_probs=69.7
Q ss_pred CCCcEEEEeCCCCCCcHHHHHHHhhcCCCe----eEEEEecCCCCCceEEEEEeCCHHHHHHHHH-ccccccCCeeEEEe
Q 017897 176 VIRRTVYVSDIDQQVTEEQLATLFLTCGQV----VDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVL 250 (364)
Q Consensus 176 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i----~~~~i~~d~~~~rG~aFV~F~~~~~A~~al~-l~g~~l~g~~i~V~ 250 (364)
...++|||+|||.++++++|+++|+.||.| ..+++. .+.++|||||+|.+.++|.+|++ |++..+.|++|.|.
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~--~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~ 100 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMM--TGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIE 100 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEE--CSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcC--CCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 346899999999999999999999999998 555555 45678999999999999999998 99999999999999
Q ss_pred eCCCC
Q 017897 251 PSKTA 255 (364)
Q Consensus 251 ~a~~~ 255 (364)
++...
T Consensus 101 ~a~~~ 105 (115)
T 2cpx_A 101 FGKNK 105 (115)
T ss_dssp ECCCC
T ss_pred EccCC
Confidence 98653
No 298
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.61 E-value=1.1e-15 Score=127.50 Aligned_cols=85 Identities=25% Similarity=0.335 Sum_probs=71.5
Q ss_pred cCceEEEEeCCCCCCCHHHHHHHhhhcCCceeEE--------EEeccCCCCeeEEEEEecCHHHHHHHHh-cCCCeeCCe
Q 017897 273 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRL--------RLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSL 343 (364)
Q Consensus 273 ~~~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v--------~i~~d~~~~kg~afV~F~~~e~A~~Al~-lng~~~~g~ 343 (364)
.+.++|||+|||+.+++++|+++|++| |.|..+ .+. ..+.++|||||+|.+.++|.+|+. |||..|.|+
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~F~~~-G~i~~~~~~~~~di~~~-~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~ 120 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYIFGRY-VDFSSETQRIMFDIRLM-KEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGK 120 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHHHGGG-CCTTCHHHHHHCEEEEE-EETTTEEEEEEECSSHHHHHHHHHHHTTBEETTE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHh-CCcccccccceeeEEec-cCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCc
Confidence 356899999999999999999999997 998774 222 247799999999999999999999 999999999
Q ss_pred eeEEeecCCCCCCCCC
Q 017897 344 PIRVSPSKTPVRPRAP 359 (364)
Q Consensus 344 ~l~V~~ak~~~~~~~~ 359 (364)
.|+|.|+++...+..+
T Consensus 121 ~l~V~~a~~~~~~~~~ 136 (143)
T 3egn_A 121 PMVVQFARSARPKQDP 136 (143)
T ss_dssp ECEEEECCCSCC----
T ss_pred EEEEEECCCCCCccCc
Confidence 9999999876444333
No 299
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.61 E-value=1.3e-15 Score=137.34 Aligned_cols=77 Identities=18% Similarity=0.272 Sum_probs=71.4
Q ss_pred CCcEEEEeCCCCCCcHHHHHHHhhcCC--CeeEEEEecCCC--CCceEEEEEeCCHHHHHHHHH-ccccccCCeeEEEee
Q 017897 177 IRRTVYVSDIDQQVTEEQLATLFLTCG--QVVDCRICGDPN--SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLP 251 (364)
Q Consensus 177 ~~~~lfV~nLp~~~te~~L~~~F~~~G--~i~~~~i~~d~~--~~rG~aFV~F~~~~~A~~al~-l~g~~l~g~~i~V~~ 251 (364)
..++|||+|||+++|+++|+++|++|| .|.+|+|+.|+. ++||||||+|.+.++|.+||+ |+++.|.|+.|.|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 467899999999999999999999999 999999999964 479999999999999999998 999999999999999
Q ss_pred CC
Q 017897 252 SK 253 (364)
Q Consensus 252 a~ 253 (364)
+.
T Consensus 147 a~ 148 (229)
T 3q2s_C 147 VN 148 (229)
T ss_dssp CC
T ss_pred CC
Confidence 75
No 300
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=2.5e-15 Score=119.61 Aligned_cols=76 Identities=18% Similarity=0.294 Sum_probs=70.8
Q ss_pred ceEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccC-CCCeeEEEEEecCHHHHHHHHhcCCCeeCCeeeEEeecCC
Q 017897 275 SRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY-QHSTRIAFVEFAMAESAIAALNCSGAVLGSLPIRVSPSKT 352 (364)
Q Consensus 275 ~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~-~~~kg~afV~F~~~e~A~~Al~lng~~~~g~~l~V~~ak~ 352 (364)
..+|||+|||+.+++++|+++|++| .|.+|.|+++. ++++|||||+|.+.++|.+||.+|+..|+|+.|.|..+.+
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~--~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~a~~ 92 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL--RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRMLMIQRYVEVSPATE 92 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS--CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHHHTTTEEETTEEEEEEECCH
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC--CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECCc
Confidence 4799999999999999999999995 79999999875 7899999999999999999999999999999999988754
No 301
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.61 E-value=1.8e-15 Score=121.38 Aligned_cols=79 Identities=19% Similarity=0.235 Sum_probs=73.0
Q ss_pred CceEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccCCCCeeEEEEEecCHHHHHHHHh-cCCCeeCCeeeEEeecCC
Q 017897 274 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSPSKT 352 (364)
Q Consensus 274 ~~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~e~A~~Al~-lng~~~~g~~l~V~~ak~ 352 (364)
..++|||+|||..+++++|+++|++| |.|.+|.++++. .++|||||+|.+.++|.+|+. |||..++|+.|+|.|+++
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~-G~v~~v~i~~~~-~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 84 (115)
T 3lqv_A 7 VNRILYIRNLPYKITAEEMYDIFGKY-GPIRQIRVGNTP-ETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYNA 84 (115)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTT-SCEEEEEEECST-TTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECCH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhc-CCeEEEEEeeCC-CCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecC
Confidence 45899999999999999999999997 999999998764 468999999999999999999 999999999999999986
Q ss_pred CC
Q 017897 353 PV 354 (364)
Q Consensus 353 ~~ 354 (364)
+.
T Consensus 85 ~~ 86 (115)
T 3lqv_A 85 NR 86 (115)
T ss_dssp HH
T ss_pred Ch
Confidence 43
No 302
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.60 E-value=4.8e-16 Score=121.82 Aligned_cols=78 Identities=15% Similarity=0.195 Sum_probs=70.2
Q ss_pred CCCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCC--CCCceEEEEEeCCHHHHHHHHHccccccCCeeEEEeeCC
Q 017897 176 VIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP--NSVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSK 253 (364)
Q Consensus 176 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~--~~~rG~aFV~F~~~~~A~~al~l~g~~l~g~~i~V~~a~ 253 (364)
...++|||+|||.++++++|+++|+.||.|.. .++.+. +.++|||||+|.+.++|.+||+|++..+.|+.|.|.++.
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~ 93 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPK 93 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGCCBTTBCCEEECCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHhcCCcEECCcEEEEEEcC
Confidence 35689999999999999999999999999887 555554 457999999999999999999999999999999999986
Q ss_pred C
Q 017897 254 T 254 (364)
Q Consensus 254 ~ 254 (364)
.
T Consensus 94 ~ 94 (101)
T 1fj7_A 94 G 94 (101)
T ss_dssp C
T ss_pred C
Confidence 4
No 303
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.60 E-value=1.3e-15 Score=118.20 Aligned_cols=76 Identities=18% Similarity=0.259 Sum_probs=68.4
Q ss_pred CCCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-ccccccCCeeEEEeeCCC
Q 017897 176 VIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSKT 254 (364)
Q Consensus 176 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~~~~rG~aFV~F~~~~~A~~al~-l~g~~l~g~~i~V~~a~~ 254 (364)
...++|||+|||..+++++|+++|+.||.|..+ ...+.++|||||+|.+.++|.+|++ +++..+.|++|.|.++..
T Consensus 14 ~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~---~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 90 (96)
T 1fjc_A 14 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV---SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGE 90 (96)
T ss_dssp TGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE---EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe---CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCC
Confidence 356899999999999999999999999988766 3345679999999999999999998 999999999999999854
No 304
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=8.9e-16 Score=124.87 Aligned_cols=77 Identities=22% Similarity=0.183 Sum_probs=70.2
Q ss_pred CCcEEEEeCCCCCCcHHHHHHHhhcCCCe----eEEEEecCC-CCCceEEEEEeCCHHHHHHHHHccccccCCeeEEEee
Q 017897 177 IRRTVYVSDIDQQVTEEQLATLFLTCGQV----VDCRICGDP-NSVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLP 251 (364)
Q Consensus 177 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i----~~~~i~~d~-~~~rG~aFV~F~~~~~A~~al~l~g~~l~g~~i~V~~ 251 (364)
..++|||+|||+++|+++|+++|+.||.| .+|+|+.|. ++++|||||+|.++++|++||+.+++.|.|+.|.|..
T Consensus 22 ~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~~~~~l~gR~i~V~~ 101 (123)
T 2dha_A 22 NQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELFR 101 (123)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTTTTEESSSCEECCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 46899999999999999999999999986 689999875 4579999999999999999999899999999999988
Q ss_pred CC
Q 017897 252 SK 253 (364)
Q Consensus 252 a~ 253 (364)
+.
T Consensus 102 a~ 103 (123)
T 2dha_A 102 ST 103 (123)
T ss_dssp EC
T ss_pred CC
Confidence 64
No 305
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.60 E-value=1.3e-15 Score=126.05 Aligned_cols=78 Identities=15% Similarity=0.146 Sum_probs=72.9
Q ss_pred CceEEEEeCCCCCCCHHHHHHHhhhcCCc---eeEEEEeccC-CCCeeEEEEEecCHHHHHHHHhcCCCeeCCeeeEEee
Q 017897 274 CSRTIYCTNIDKKVTQGDIKLFFESVCGE---VQRLRLLGDY-QHSTRIAFVEFAMAESAIAALNCSGAVLGSLPIRVSP 349 (364)
Q Consensus 274 ~~~~l~V~nLp~~~tee~L~~~F~~~~G~---I~~v~i~~d~-~~~kg~afV~F~~~e~A~~Al~lng~~~~g~~l~V~~ 349 (364)
..++|||+|||+.+++++|+++|++| |. |.+|.|+++. ++++|||||+|.+.++|.+||.+|+..|+|+.|+|.+
T Consensus 43 ~~~~lfVgnLp~~~te~dL~~~F~~~-G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~~~g~~l~gr~i~V~~ 121 (136)
T 2hgl_A 43 EGFVVKLRGLPWSCSVEDVQNFLSDC-TIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALKKDRESMGHRYIEVFK 121 (136)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHTTTC-CCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHTTTEEESSSSEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHh-CCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCEECCEEEEEEE
Confidence 45899999999999999999999996 99 8999999875 7899999999999999999999999999999999999
Q ss_pred cCC
Q 017897 350 SKT 352 (364)
Q Consensus 350 ak~ 352 (364)
+.+
T Consensus 122 a~~ 124 (136)
T 2hgl_A 122 SHR 124 (136)
T ss_dssp CCH
T ss_pred CCh
Confidence 864
No 306
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.60 E-value=2.8e-15 Score=119.33 Aligned_cols=72 Identities=25% Similarity=0.490 Sum_probs=67.6
Q ss_pred CCcEEEEeCCCCC-CcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-ccccccCCeeEEEeeCCC
Q 017897 177 IRRTVYVSDIDQQ-VTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSKT 254 (364)
Q Consensus 177 ~~~~lfV~nLp~~-~te~~L~~~F~~~G~i~~~~i~~d~~~~rG~aFV~F~~~~~A~~al~-l~g~~l~g~~i~V~~a~~ 254 (364)
..++|||+|||++ +++++|+++|++||.|.+|++ ++|||||+|.+.++|.+|++ |++..+.|++|.|.++..
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 99 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAGE 99 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESCC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCC
Confidence 4589999999999 999999999999999999999 46899999999999999997 999999999999999864
No 307
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.60 E-value=3.1e-15 Score=127.97 Aligned_cols=78 Identities=19% Similarity=0.238 Sum_probs=72.4
Q ss_pred CCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEeCCHHHHHHHHH-ccccccCCeeEEEeeCC
Q 017897 177 IRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSK 253 (364)
Q Consensus 177 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~~--~~rG~aFV~F~~~~~A~~al~-l~g~~l~g~~i~V~~a~ 253 (364)
..++|||+|||+.+++++|+++|++||.|..|.|+.++. .++|||||+|.+.++|.+||+ |+|..|.|++|.|.|+.
T Consensus 71 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 150 (165)
T 1rk8_A 71 EGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCF 150 (165)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEec
Confidence 467899999999999999999999999999999999864 469999999999999999998 99999999999999986
Q ss_pred C
Q 017897 254 T 254 (364)
Q Consensus 254 ~ 254 (364)
.
T Consensus 151 ~ 151 (165)
T 1rk8_A 151 V 151 (165)
T ss_dssp E
T ss_pred C
Confidence 4
No 308
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.60 E-value=8.2e-16 Score=120.68 Aligned_cols=76 Identities=20% Similarity=0.366 Sum_probs=71.0
Q ss_pred CCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCC-CCCceEEEEEeCCHHHHHHHHHccccccCCeeEEEeeCC
Q 017897 177 IRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP-NSVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSK 253 (364)
Q Consensus 177 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~-~~~rG~aFV~F~~~~~A~~al~l~g~~l~g~~i~V~~a~ 253 (364)
..++|||+|||.++++++|+++|+.||.|.+++++.++ +.++|||||+|.+.++|.+|++ ++..+.|++|.|.++.
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~-~~~~~~g~~l~v~~a~ 84 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE-SQINFHGKKLKLGPAI 84 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT-CCCEETTEECEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh-CCCeECCEEEEEEECC
Confidence 45899999999999999999999999999999999987 3369999999999999999999 9999999999999875
No 309
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.60 E-value=1.8e-15 Score=115.57 Aligned_cols=73 Identities=18% Similarity=0.166 Sum_probs=68.0
Q ss_pred CCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-ccccccCCeeEEEeeCCC
Q 017897 177 IRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSKT 254 (364)
Q Consensus 177 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~~~~rG~aFV~F~~~~~A~~al~-l~g~~l~g~~i~V~~a~~ 254 (364)
..++|||+|||+++++++|+++|++| .|.++++. .++|||||+|.+.++|++|++ ++|..+.|++|+|.++..
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 77 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD----RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPT 77 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE----GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe----CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCC
Confidence 46889999999999999999999999 99999885 567999999999999999998 999999999999999854
No 310
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.60 E-value=2.4e-15 Score=119.99 Aligned_cols=79 Identities=19% Similarity=0.288 Sum_probs=70.5
Q ss_pred ccCceEEEEeCCCCC-CCHHHHHHHhhhcCCceeEEEEeccCCCCeeEEEEEecCHHHHHHHHh-cC--CCeeCCeeeEE
Q 017897 272 EMCSRTIYCTNIDKK-VTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CS--GAVLGSLPIRV 347 (364)
Q Consensus 272 ~~~~~~l~V~nLp~~-~tee~L~~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~e~A~~Al~-ln--g~~~~g~~l~V 347 (364)
..+.++|||+|||+. +++++|+++|++| |.|.+|.|++. +|||||+|.+.++|.+|+. |+ +..|.|++|+|
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~f-G~V~~v~i~~~----kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V 96 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPY-GKIKNYILMRM----KSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKV 96 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTT-SCCSEEEEETT----TTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhc-CCEEEEEEecC----CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 456789999999998 9999999999997 99999999864 5799999999999999999 75 46799999999
Q ss_pred eecCCCCC
Q 017897 348 SPSKTPVR 355 (364)
Q Consensus 348 ~~ak~~~~ 355 (364)
.|++....
T Consensus 97 ~~a~~~~~ 104 (112)
T 1x4f_A 97 DLSEKYKK 104 (112)
T ss_dssp EEECSCSS
T ss_pred EECccccc
Confidence 99987543
No 311
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=1.7e-15 Score=116.76 Aligned_cols=74 Identities=23% Similarity=0.257 Sum_probs=66.6
Q ss_pred CCCcEEEEeCCCCCCcHHHHHHHhhcCCC-eeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-ccc-cccCCeeEEEeeC
Q 017897 176 VIRRTVYVSDIDQQVTEEQLATLFLTCGQ-VVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAG-TMLGFYPVRVLPS 252 (364)
Q Consensus 176 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~-i~~~~i~~d~~~~rG~aFV~F~~~~~A~~al~-l~g-~~l~g~~i~V~~a 252 (364)
...++|||+|||+++++++|+++|++||. |..+.+. ++|||||+|.+.++|++|++ |++ ..+.|++|.|.++
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a 80 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-----KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYS 80 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-----ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-----CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEc
Confidence 45689999999999999999999999999 6666653 36899999999999999998 999 9999999999998
Q ss_pred CC
Q 017897 253 KT 254 (364)
Q Consensus 253 ~~ 254 (364)
..
T Consensus 81 ~~ 82 (93)
T 2cqh_A 81 VS 82 (93)
T ss_dssp CC
T ss_pred cC
Confidence 64
No 312
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.60 E-value=2e-15 Score=118.41 Aligned_cols=80 Identities=19% Similarity=0.350 Sum_probs=73.7
Q ss_pred CceEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccC-CCCeeEEEEEecCHHHHHHHHhcCCCeeCCeeeEEeecCC
Q 017897 274 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY-QHSTRIAFVEFAMAESAIAALNCSGAVLGSLPIRVSPSKT 352 (364)
Q Consensus 274 ~~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~-~~~kg~afV~F~~~e~A~~Al~lng~~~~g~~l~V~~ak~ 352 (364)
..++|||+|||..+++++|+++|++| |.|.+|.++++. +.++|||||+|.+.++|.+|+. ++..++|+.|.|.++.+
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~-G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~-~~~~~~g~~l~v~~a~~ 85 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARY-GSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE-SQINFHGKKLKLGPAIR 85 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGG-SCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT-CCCEETTEECEEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhC-CCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh-CCCeECCEEEEEEECCc
Confidence 45899999999999999999999997 999999999986 6789999999999999999999 99999999999999976
Q ss_pred CCC
Q 017897 353 PVR 355 (364)
Q Consensus 353 ~~~ 355 (364)
+..
T Consensus 86 ~~~ 88 (102)
T 2xs2_A 86 KQN 88 (102)
T ss_dssp CC-
T ss_pred Ccc
Confidence 543
No 313
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=1.1e-14 Score=112.61 Aligned_cols=79 Identities=22% Similarity=0.326 Sum_probs=68.4
Q ss_pred CceEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccCCCCeeEEEEEecCHHHHHHHHhcCCCeeCCeeeEEeecCCC
Q 017897 274 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALNCSGAVLGSLPIRVSPSKTP 353 (364)
Q Consensus 274 ~~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~e~A~~Al~lng~~~~g~~l~V~~ak~~ 353 (364)
..++|||+|||..+++++|+++|++| |.|.+| +.+....+ ||||+|.+.++|.+|+.|||..|+|+.|+|.++.++
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~-G~v~~v--~~~~~~g~-~afV~f~~~~~a~~ai~l~g~~~~g~~l~V~~a~~~ 82 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAF-GPVASV--VMDKDKGV-FAIVEMGDVGAREAVLSQSQHSLGGHRLRVRPREQK 82 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGT-SCEEEE--EECSSSCC-EEEEEESSHHHHHHHHTCSCCEETTEECCCBCSCCS
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhc-CCeEEE--EEcCCCCc-EEEEEECCHHHHHHHHhcCCeEECCEEEEEEECCcC
Confidence 45799999999999999999999997 999998 34432233 999999999999999999999999999999999865
Q ss_pred CCC
Q 017897 354 VRP 356 (364)
Q Consensus 354 ~~~ 356 (364)
..+
T Consensus 83 ~~~ 85 (94)
T 2e5g_A 83 EFQ 85 (94)
T ss_dssp CCC
T ss_pred CCC
Confidence 433
No 314
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=1.5e-14 Score=112.45 Aligned_cols=74 Identities=24% Similarity=0.307 Sum_probs=67.5
Q ss_pred CCCCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-ccccccCCeeEEEeeCC
Q 017897 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSK 253 (364)
Q Consensus 175 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~~~~rG~aFV~F~~~~~A~~al~-l~g~~l~g~~i~V~~a~ 253 (364)
....++|||+|| ++++++|+++|++||.|.+|.+. .++|||||+|.+.++|.+|++ |++..+.|++|.|.++.
T Consensus 12 ~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~ 85 (97)
T 1x5p_A 12 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD----PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIAR 85 (97)
T ss_dssp CCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE----TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCS
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec----CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECC
Confidence 345689999996 89999999999999999999995 456899999999999999997 99999999999999986
Q ss_pred C
Q 017897 254 T 254 (364)
Q Consensus 254 ~ 254 (364)
.
T Consensus 86 ~ 86 (97)
T 1x5p_A 86 K 86 (97)
T ss_dssp S
T ss_pred C
Confidence 5
No 315
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.59 E-value=9.1e-16 Score=121.72 Aligned_cols=79 Identities=15% Similarity=0.100 Sum_probs=73.4
Q ss_pred cCceEEEEeCCCCCCCHHHHHHHhhhcCCc---eeEEEEeccC-CCCeeEEEEEecCHHHHHHHHhcCCCeeCCeeeEEe
Q 017897 273 MCSRTIYCTNIDKKVTQGDIKLFFESVCGE---VQRLRLLGDY-QHSTRIAFVEFAMAESAIAALNCSGAVLGSLPIRVS 348 (364)
Q Consensus 273 ~~~~~l~V~nLp~~~tee~L~~~F~~~~G~---I~~v~i~~d~-~~~kg~afV~F~~~e~A~~Al~lng~~~~g~~l~V~ 348 (364)
...++|||+|||+.+++++|+++|++| |. |..|.|+++. ++++|||||+|.+.++|.+||.+|+..++|+.|+|.
T Consensus 9 ~~~~~l~V~nLp~~~te~~l~~~F~~~-g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~ 87 (107)
T 2lmi_A 9 DDVFLIRAQGLPWSCTMEDVLNFFSDC-RIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVY 87 (107)
T ss_dssp SSCCEEEEECCCSSCCSHHHHHHTTTS-CBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHTTTTCCSSSSCCCCE
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhc-CCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCcceeCCeEEEEE
Confidence 356899999999999999999999996 88 8999999875 789999999999999999999999999999999999
Q ss_pred ecCC
Q 017897 349 PSKT 352 (364)
Q Consensus 349 ~ak~ 352 (364)
++.+
T Consensus 88 ~a~~ 91 (107)
T 2lmi_A 88 EINN 91 (107)
T ss_dssp ECCH
T ss_pred ECCH
Confidence 9875
No 316
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=3.3e-15 Score=115.76 Aligned_cols=77 Identities=23% Similarity=0.370 Sum_probs=69.9
Q ss_pred CCCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEE-EEecCCCCCceEEEEEeCCHHHHHHHHH-ccccccCCeeEEEeeCC
Q 017897 176 VIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDC-RICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSK 253 (364)
Q Consensus 176 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~-~i~~d~~~~rG~aFV~F~~~~~A~~al~-l~g~~l~g~~i~V~~a~ 253 (364)
...++|||+|||+++++++|+++|++||.|.++ .++.++.+ |.|||+|.+.++|.+|++ |+|..+.|++|.|.++.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~--~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 90 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSET--AVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIP 90 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSS--EEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECC
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCC--CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 346899999999999999999999999999999 48887654 449999999999999998 99999999999999986
Q ss_pred C
Q 017897 254 T 254 (364)
Q Consensus 254 ~ 254 (364)
+
T Consensus 91 ~ 91 (96)
T 2e44_A 91 D 91 (96)
T ss_dssp C
T ss_pred c
Confidence 4
No 317
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=7.6e-15 Score=115.04 Aligned_cols=77 Identities=29% Similarity=0.336 Sum_probs=68.6
Q ss_pred CCCCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCC--CCCceEEEEEeCCHHHHHHHHH-ccccccCCeeEEEee
Q 017897 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP--NSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLP 251 (364)
Q Consensus 175 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~--~~~rG~aFV~F~~~~~A~~al~-l~g~~l~g~~i~V~~ 251 (364)
....++|||+|||+++++++|+++|+.|+ .++++.++ +.++|||||+|.+.++|.+||+ |++..|.|++|.|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDW 88 (102)
T ss_dssp SCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 44578999999999999999999999874 67777775 3469999999999999999998 999999999999999
Q ss_pred CCC
Q 017897 252 SKT 254 (364)
Q Consensus 252 a~~ 254 (364)
+++
T Consensus 89 a~~ 91 (102)
T 2fc8_A 89 AKP 91 (102)
T ss_dssp CCC
T ss_pred ecC
Confidence 864
No 318
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=2.7e-15 Score=119.88 Aligned_cols=73 Identities=16% Similarity=0.269 Sum_probs=66.8
Q ss_pred CCcEEEE--eCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-cccccc-----CCeeEE
Q 017897 177 IRRTVYV--SDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTML-----GFYPVR 248 (364)
Q Consensus 177 ~~~~lfV--~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~~~~rG~aFV~F~~~~~A~~al~-l~g~~l-----~g~~i~ 248 (364)
..++||| |||+.++++++|+++|++||.|.+|.++.+ ||||||+|.+.++|++|++ |||..+ .|++|.
T Consensus 24 pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~----rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~ 99 (114)
T 2cq2_A 24 ATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN----KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLY 99 (114)
T ss_dssp CCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT----CSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECE
T ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEE
Confidence 4688999 779999999999999999999999988753 6899999999999999998 999988 689999
Q ss_pred EeeCC
Q 017897 249 VLPSK 253 (364)
Q Consensus 249 V~~a~ 253 (364)
|.+++
T Consensus 100 v~~a~ 104 (114)
T 2cq2_A 100 LNFVE 104 (114)
T ss_dssp EEEES
T ss_pred EEecc
Confidence 99975
No 319
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.57 E-value=4.2e-15 Score=134.02 Aligned_cols=78 Identities=17% Similarity=0.216 Sum_probs=72.4
Q ss_pred CceEEEEeCCCCCCCHHHHHHHhhhcCC--ceeEEEEeccC--CCCeeEEEEEecCHHHHHHHHh-cCCCeeCCeeeEEe
Q 017897 274 CSRTIYCTNIDKKVTQGDIKLFFESVCG--EVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVS 348 (364)
Q Consensus 274 ~~~~l~V~nLp~~~tee~L~~~F~~~~G--~I~~v~i~~d~--~~~kg~afV~F~~~e~A~~Al~-lng~~~~g~~l~V~ 348 (364)
..++|||+|||..+++++|+++|++| | .|.+|+|+++. ++++|||||+|.+.++|.+||. ||+..|.|+.|+|.
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~-G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~ 145 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSL-GVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVT 145 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTT-TCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHH-CCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEE
Confidence 45799999999999999999999997 9 99999999985 7899999999999999999999 99999999999999
Q ss_pred ecCC
Q 017897 349 PSKT 352 (364)
Q Consensus 349 ~ak~ 352 (364)
|+++
T Consensus 146 ~a~~ 149 (229)
T 3q2s_C 146 PVNK 149 (229)
T ss_dssp ECCH
T ss_pred ECCC
Confidence 9864
No 320
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=2.5e-15 Score=122.39 Aligned_cols=79 Identities=20% Similarity=0.220 Sum_probs=70.9
Q ss_pred cCceEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEecc--CCCCeeEEEEEecCHHHHHHHHhcCCCeeCCeeeEEeec
Q 017897 273 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGD--YQHSTRIAFVEFAMAESAIAALNCSGAVLGSLPIRVSPS 350 (364)
Q Consensus 273 ~~~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d--~~~~kg~afV~F~~~e~A~~Al~lng~~~~g~~l~V~~a 350 (364)
...++|||+|||+.+++++|+++|++| |.|..+.++.+ .+.++|||||+|.+.++|.+||.||+..|+|+.|+|.++
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~-G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V~~a 101 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKL-DIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHPI 101 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSS-CBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHTSCSBCSTTSCBEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhc-CCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEEC
Confidence 356899999999999999999999996 99988555543 378899999999999999999999999999999999998
Q ss_pred CC
Q 017897 351 KT 352 (364)
Q Consensus 351 k~ 352 (364)
.+
T Consensus 102 ~~ 103 (124)
T 1wel_A 102 TK 103 (124)
T ss_dssp CH
T ss_pred CH
Confidence 65
No 321
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.57 E-value=6.2e-15 Score=111.97 Aligned_cols=71 Identities=27% Similarity=0.461 Sum_probs=66.7
Q ss_pred CCcEEEEeCCCCCCcHHHHHHHhhcC----C-------CeeEEEEecCCCCCceEEEEEeCCHHHHHHHHHccccccCCe
Q 017897 177 IRRTVYVSDIDQQVTEEQLATLFLTC----G-------QVVDCRICGDPNSVLRFAFVEFTDEEGARAALSLAGTMLGFY 245 (364)
Q Consensus 177 ~~~~lfV~nLp~~~te~~L~~~F~~~----G-------~i~~~~i~~d~~~~rG~aFV~F~~~~~A~~al~l~g~~l~g~ 245 (364)
..++|||+|||+++++++|+++|++| | .|.++++..+ +|||||+|.+.++|.+|+.+++..+.|+
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~----kg~afV~f~~~~~a~~A~~l~g~~~~g~ 80 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD----KNFAFLEFRSVDETTQAMAFDGIIFQGQ 80 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS----SSEEEEEESSHHHHHHHGGGTTCEETTE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC----CcEEEEEcCCHHHHHHHHhcCCCEECCe
Confidence 46899999999999999999999999 8 9999999866 5899999999999999999999999999
Q ss_pred eEEEee
Q 017897 246 PVRVLP 251 (364)
Q Consensus 246 ~i~V~~ 251 (364)
+|+|.+
T Consensus 81 ~l~V~r 86 (87)
T 2hzc_A 81 SLKIRR 86 (87)
T ss_dssp ECEEEC
T ss_pred EEEEeC
Confidence 999975
No 322
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.35 E-value=1.7e-16 Score=127.65 Aligned_cols=83 Identities=24% Similarity=0.319 Sum_probs=76.0
Q ss_pred cCceEEEEeCCCCCCCHHHHHHHhhhcCCceeE--------EEEeccC--CCCeeEEEEEecCHHHHHHHHh-cCCCeeC
Q 017897 273 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQR--------LRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVLG 341 (364)
Q Consensus 273 ~~~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~--------v~i~~d~--~~~kg~afV~F~~~e~A~~Al~-lng~~~~ 341 (364)
.+.++|||+|||..+++++|+++|++| |.|.. |.++.+. +.++|||||+|.+.++|.+|+. |||..+.
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQI-GIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 456899999999999999999999997 99998 8888874 6789999999999999999999 9999999
Q ss_pred CeeeEEeecCCCCCC
Q 017897 342 SLPIRVSPSKTPVRP 356 (364)
Q Consensus 342 g~~l~V~~ak~~~~~ 356 (364)
|+.|+|.|++++...
T Consensus 84 g~~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 84 GNPIKVSFATRRADF 98 (116)
Confidence 999999999886544
No 323
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=1.1e-14 Score=112.77 Aligned_cols=77 Identities=17% Similarity=0.209 Sum_probs=70.0
Q ss_pred CceEEEEeCCCCCCCHHHHHHHhhhcCCceeEE-EEeccCCCCeeEEEEEecCHHHHHHHHh-cCCCeeCCeeeEEeecC
Q 017897 274 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRL-RLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSPSK 351 (364)
Q Consensus 274 ~~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v-~i~~d~~~~kg~afV~F~~~e~A~~Al~-lng~~~~g~~l~V~~ak 351 (364)
..++|||+|||..+++++|+++|++| |.|.+| .++.+... +.|||+|.+.++|.+|+. |||..++|++|+|.|++
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~-G~v~~~~~i~~~~~~--~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 90 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQY-GVVESCEQVNTDSET--AVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIP 90 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHH-SCEEEEEEECCSSSS--EEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECC
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhc-CCeEEEEEeecCCCC--CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 45899999999999999999999997 999999 47777532 349999999999999999 99999999999999998
Q ss_pred CC
Q 017897 352 TP 353 (364)
Q Consensus 352 ~~ 353 (364)
+.
T Consensus 91 ~~ 92 (96)
T 2e44_A 91 DE 92 (96)
T ss_dssp CC
T ss_pred cc
Confidence 77
No 324
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.57 E-value=9.5e-15 Score=123.86 Aligned_cols=78 Identities=21% Similarity=0.155 Sum_probs=70.7
Q ss_pred CceEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccCCCCeeEEEEEecCHHHHHHHHh-cCCCeeCC--eeeEEeec
Q 017897 274 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGS--LPIRVSPS 350 (364)
Q Consensus 274 ~~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~e~A~~Al~-lng~~~~g--~~l~V~~a 350 (364)
...+|||+||++.+++++|+++|++| |.|.+|.|..+. ++|||||+|.+.++|.+|+. |||..|.| +.|+|.|+
T Consensus 45 ~vl~l~VgNL~~~vted~L~~~Fs~f-G~V~~V~i~~k~--~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~A 121 (164)
T 1sjr_A 45 PVLRIIVENLFYPVTLDVLHQIFSKF-GTVLKIITFTKN--NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 121 (164)
T ss_dssp CEEEEEECSCCSCCCHHHHHHHHHHH-SCEEEEEEEESS--SCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEEC
T ss_pred ceEEEEEeCcCCCCCHHHHHHHHHhc-CCEEEEEEEeCC--CCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEe
Confidence 34789999999999999999999997 999999997543 57899999999999999999 99999965 99999999
Q ss_pred CCCC
Q 017897 351 KTPV 354 (364)
Q Consensus 351 k~~~ 354 (364)
+++.
T Consensus 122 k~~~ 125 (164)
T 1sjr_A 122 KLTS 125 (164)
T ss_dssp SSSS
T ss_pred cCCc
Confidence 8763
No 325
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.57 E-value=1.5e-14 Score=118.17 Aligned_cols=76 Identities=21% Similarity=0.204 Sum_probs=69.6
Q ss_pred CceEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccCCCCeeE-EEEEecCHHHHHHHHh-cCCCeeCC--eeeEEee
Q 017897 274 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRI-AFVEFAMAESAIAALN-CSGAVLGS--LPIRVSP 349 (364)
Q Consensus 274 ~~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~~~~kg~-afV~F~~~e~A~~Al~-lng~~~~g--~~l~V~~ 349 (364)
....|||+||++.+++++|+++|++| |.|.+|.++.+ .+|+ |||+|.+.++|.+|+. |||..|.| ++|+|.|
T Consensus 27 ~VL~I~V~NL~~~vte~~L~~lFs~y-G~V~~V~i~~~---~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ 102 (130)
T 3zzy_A 27 PVLRIIVENLFYPVTLDVLHQIFSKF-GTVLKIITFTK---NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDF 102 (130)
T ss_dssp SEEEEEEESCCSCCCHHHHHHHHTTS-SCEEEEEEEEE---TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEE
T ss_pred ceEEEEECCCCCCCCHHHHHHHHhCc-CCEEEEEEEcC---CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEe
Confidence 45788999999999999999999997 99999998874 3577 9999999999999999 99999988 9999999
Q ss_pred cCCC
Q 017897 350 SKTP 353 (364)
Q Consensus 350 ak~~ 353 (364)
+++.
T Consensus 103 ak~~ 106 (130)
T 3zzy_A 103 SKLT 106 (130)
T ss_dssp CSCS
T ss_pred cCCC
Confidence 9876
No 326
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.57 E-value=9.9e-15 Score=123.74 Aligned_cols=77 Identities=21% Similarity=0.157 Sum_probs=69.4
Q ss_pred CCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-ccccccCC--eeEEEeeCC
Q 017897 177 IRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGF--YPVRVLPSK 253 (364)
Q Consensus 177 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~~~~rG~aFV~F~~~~~A~~al~-l~g~~l~g--~~i~V~~a~ 253 (364)
.-.+|||+||++.+|+++|+++|++||.|.+|++..+. ++|||||+|.+.++|++|++ |+|..|.| ++|+|.|++
T Consensus 45 ~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~--~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak 122 (164)
T 1sjr_A 45 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN--NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSK 122 (164)
T ss_dssp CEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS--SCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECS
T ss_pred ceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC--CCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEec
Confidence 34679999999999999999999999999999987543 57999999999999999998 99999965 999999997
Q ss_pred CC
Q 017897 254 TA 255 (364)
Q Consensus 254 ~~ 255 (364)
..
T Consensus 123 ~~ 124 (164)
T 1sjr_A 123 LT 124 (164)
T ss_dssp SS
T ss_pred CC
Confidence 54
No 327
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=5.5e-15 Score=112.75 Aligned_cols=74 Identities=24% Similarity=0.329 Sum_probs=65.4
Q ss_pred CCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHHccccccCCeeEEEeeCCC
Q 017897 177 IRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSKT 254 (364)
Q Consensus 177 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~~~~rG~aFV~F~~~~~A~~al~l~g~~l~g~~i~V~~a~~ 254 (364)
..++|||+|||+++++++|+++|++||.|.+++++.+ ++|||||+|.+.++|++|+.. ...+.|++|.|.++.+
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~---~~g~afV~f~~~~~a~~~~~~-~~~~~g~~l~v~~a~~ 77 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP---FRAFAFVTFADDQIAQSLCGE-DLIIKGISVHISNAEP 77 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS---CCSCCEEECSCHHHHHHTTTC-EEEETTEEEEEECCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC---CCCEEEEEECCHHHHHHHhcC-CceeCCEEEEEEecCC
Confidence 4689999999999999999999999999999999876 679999999999999876543 3456899999999864
No 328
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.57 E-value=6.1e-15 Score=127.71 Aligned_cols=79 Identities=22% Similarity=0.251 Sum_probs=73.7
Q ss_pred CCCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCC-CCCceEEEEEeCCHHHHHHHHH-ccccccCCeeEEEeeCC
Q 017897 176 VIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP-NSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSK 253 (364)
Q Consensus 176 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~-~~~rG~aFV~F~~~~~A~~al~-l~g~~l~g~~i~V~~a~ 253 (364)
...++|||+|||+.+++++|+++|+.||.|.+|.|+.++ +.++|||||+|.+.++|.+|++ +++..|.|++|.|.++.
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a~ 165 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVA 165 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEec
Confidence 346899999999999999999999999999999999987 4479999999999999999998 99999999999999986
Q ss_pred C
Q 017897 254 T 254 (364)
Q Consensus 254 ~ 254 (364)
.
T Consensus 166 ~ 166 (177)
T 2f3j_A 166 S 166 (177)
T ss_dssp S
T ss_pred C
Confidence 4
No 329
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.56 E-value=3.8e-15 Score=124.26 Aligned_cols=78 Identities=22% Similarity=0.273 Sum_probs=69.1
Q ss_pred CCCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEE--------EEecCCCCCceEEEEEeCCHHHHHHHHH-ccccccCCee
Q 017897 176 VIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDC--------RICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYP 246 (364)
Q Consensus 176 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~--------~i~~d~~~~rG~aFV~F~~~~~A~~al~-l~g~~l~g~~ 246 (364)
...++|||+|||+++|+++|+++|+.||.|..+ ++. ..+.++|||||+|.+.++|.+|++ |||..+.|++
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~-~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 121 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLM-KEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKP 121 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEE-EETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEec-cCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 346899999999999999999999999998764 332 235679999999999999999998 9999999999
Q ss_pred EEEeeCCC
Q 017897 247 VRVLPSKT 254 (364)
Q Consensus 247 i~V~~a~~ 254 (364)
|.|.+++.
T Consensus 122 l~V~~a~~ 129 (143)
T 3egn_A 122 MVVQFARS 129 (143)
T ss_dssp CEEEECCC
T ss_pred EEEEECCC
Confidence 99999865
No 330
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.33 E-value=2.7e-16 Score=126.58 Aligned_cols=79 Identities=24% Similarity=0.334 Sum_probs=73.0
Q ss_pred CCCcEEEEeCCCCCCcHHHHHHHhhcCCCeeE--------EEEecCCC--CCceEEEEEeCCHHHHHHHHH-ccccccCC
Q 017897 176 VIRRTVYVSDIDQQVTEEQLATLFLTCGQVVD--------CRICGDPN--SVLRFAFVEFTDEEGARAALS-LAGTMLGF 244 (364)
Q Consensus 176 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~--------~~i~~d~~--~~rG~aFV~F~~~~~A~~al~-l~g~~l~g 244 (364)
...++|||+|||.++++++|+++|++||.|.+ ++++.++. .++|||||+|.+.++|.+|++ |++..+.|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 84 (116)
Confidence 45689999999999999999999999999998 88998864 579999999999999999998 99999999
Q ss_pred eeEEEeeCCC
Q 017897 245 YPVRVLPSKT 254 (364)
Q Consensus 245 ~~i~V~~a~~ 254 (364)
++|.|.+++.
T Consensus 85 ~~l~V~~a~~ 94 (116)
T 2lcw_A 85 NPIKVSFATR 94 (116)
Confidence 9999999864
No 331
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=4.9e-14 Score=109.50 Aligned_cols=76 Identities=21% Similarity=0.268 Sum_probs=68.9
Q ss_pred cCceEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccCCCCeeEEEEEecCHHHHHHHHh-cCCCeeCCeeeEEeecC
Q 017897 273 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSPSK 351 (364)
Q Consensus 273 ~~~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~e~A~~Al~-lng~~~~g~~l~V~~ak 351 (364)
...++|||+|| .+++++|+++|++| |.|.+|.|.+ ++|||||+|.+.++|.+|+. |||..|.|++|+|.|++
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~-G~i~~v~i~~----~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~ 85 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPF-GNIIDLSMDP----PRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIAR 85 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTT-SCEEEEEEET----TTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCS
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhC-CCEEEEEecC----CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECC
Confidence 35689999996 89999999999997 9999999953 56799999999999999998 99999999999999998
Q ss_pred CCCC
Q 017897 352 TPVR 355 (364)
Q Consensus 352 ~~~~ 355 (364)
++..
T Consensus 86 ~~~~ 89 (97)
T 1x5p_A 86 KQPM 89 (97)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 8643
No 332
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=1.7e-14 Score=115.70 Aligned_cols=74 Identities=18% Similarity=0.231 Sum_probs=62.5
Q ss_pred CCCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCCC-----CCceEEEEEeCCHHHHHHHHH-ccccccCCeeEEE
Q 017897 176 VIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN-----SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRV 249 (364)
Q Consensus 176 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~~-----~~rG~aFV~F~~~~~A~~al~-l~g~~l~g~~i~V 249 (364)
...++|||+|||+++++++|+++|++||.|. +.++.++. .++|||||+|.++++|++||+ ++ .+.|+.|.+
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~ 82 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLC 82 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEe
Confidence 3568999999999999999999999999999 88887763 569999999999999999998 73 256666665
Q ss_pred eeC
Q 017897 250 LPS 252 (364)
Q Consensus 250 ~~a 252 (364)
..+
T Consensus 83 ~~~ 85 (114)
T 2dnl_A 83 VSS 85 (114)
T ss_dssp ECC
T ss_pred ccC
Confidence 543
No 333
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.56 E-value=8.1e-15 Score=117.80 Aligned_cols=73 Identities=22% Similarity=0.211 Sum_probs=66.1
Q ss_pred CCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-ccccccCCee-----EEEe
Q 017897 177 IRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYP-----VRVL 250 (364)
Q Consensus 177 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~~~~rG~aFV~F~~~~~A~~al~-l~g~~l~g~~-----i~V~ 250 (364)
..++|||+|||+++++++|+++|++||.|.+|.|+.+ |||||+|.+.++|++||+ ||+..|.|++ |.|.
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-----g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~ 89 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-----GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 89 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-----SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-----CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEec
Confidence 4588999999999999999999999999999999887 899999999999999998 9999999998 7777
Q ss_pred eCCC
Q 017897 251 PSKT 254 (364)
Q Consensus 251 ~a~~ 254 (364)
.+.+
T Consensus 90 ~~~~ 93 (115)
T 3beg_B 90 VDGP 93 (115)
T ss_dssp ECC-
T ss_pred cCCC
Confidence 7654
No 334
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.56 E-value=8.1e-15 Score=111.89 Aligned_cols=75 Identities=16% Similarity=0.165 Sum_probs=68.6
Q ss_pred CceEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccCCCCeeEEEEEecCHHHHHHHHh-cCCCeeCCeeeEEeecCC
Q 017897 274 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSPSKT 352 (364)
Q Consensus 274 ~~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~e~A~~Al~-lng~~~~g~~l~V~~ak~ 352 (364)
..++|||+|||..+++++|+++|++| .|.++.+. .++|||||+|.+.++|.+|+. |||..++|++|+|.|+..
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~--~v~~~~i~----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 77 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY--DLKYCYVD----RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPT 77 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS--CCCCEEEE----GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC--CeEEEEEe----CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCC
Confidence 35799999999999999999999995 89999885 477899999999999999999 999999999999999876
Q ss_pred CC
Q 017897 353 PV 354 (364)
Q Consensus 353 ~~ 354 (364)
..
T Consensus 78 ~~ 79 (88)
T 1wg1_A 78 DA 79 (88)
T ss_dssp CC
T ss_pred Cc
Confidence 53
No 335
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=4.6e-15 Score=120.66 Aligned_cols=78 Identities=22% Similarity=0.174 Sum_probs=71.1
Q ss_pred cCceEEEEeCCCCCCCHHHHHHHhhhcCCce----eEEEEeccC-CCCeeEEEEEecCHHHHHHHHhcCCCeeCCeeeEE
Q 017897 273 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEV----QRLRLLGDY-QHSTRIAFVEFAMAESAIAALNCSGAVLGSLPIRV 347 (364)
Q Consensus 273 ~~~~~l~V~nLp~~~tee~L~~~F~~~~G~I----~~v~i~~d~-~~~kg~afV~F~~~e~A~~Al~lng~~~~g~~l~V 347 (364)
....+|||+|||+.+++++|+++|++| |.| ..|.|+++. ++++|||||+|.+.++|.+||..|+..++|+.|.|
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~-g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~~~~~l~gR~i~V 99 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQH-CPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIEL 99 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTT-SCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTTTTEESSSCEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhh-CCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCCCeeCCeEEEE
Confidence 346899999999999999999999997 875 689998875 78999999999999999999999999999999999
Q ss_pred eecC
Q 017897 348 SPSK 351 (364)
Q Consensus 348 ~~ak 351 (364)
..+.
T Consensus 100 ~~a~ 103 (123)
T 2dha_A 100 FRST 103 (123)
T ss_dssp EEEC
T ss_pred EECC
Confidence 8874
No 336
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.55 E-value=1.3e-14 Score=111.08 Aligned_cols=76 Identities=18% Similarity=0.323 Sum_probs=62.9
Q ss_pred ccCceEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccCCCCeeEEEEEecCHHHHHHHHhcCCC--eeCCeeeEEee
Q 017897 272 EMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALNCSGA--VLGSLPIRVSP 349 (364)
Q Consensus 272 ~~~~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~e~A~~Al~lng~--~~~g~~l~V~~ 349 (364)
..+..+|||+|||+.+++++|+++|++| |.|.+|.|+++ ++|||||+|.+.++|.+ +++. .+.|+.|.|.+
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~-G~i~~v~i~~~---srGfaFV~F~~~~~A~~---~~~~~~~~~g~~v~v~~ 80 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQY-GEVVDVFIPKP---FRAFAFVTFADDKVAQS---LCGEDLIIKGISVHISN 80 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTT-SCEEEEECCSS---CCSEEEEEESCHHHHHH---HTTCEEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcc-CCEEEEEEeeC---CCCEEEEEECCHHHHHH---HcCCCcccCCEEEEEEE
Confidence 3456899999999999999999999997 99999999885 78999999999999984 3444 56799999999
Q ss_pred cCCCC
Q 017897 350 SKTPV 354 (364)
Q Consensus 350 ak~~~ 354 (364)
++++.
T Consensus 81 a~~k~ 85 (89)
T 3d2w_A 81 AEPKH 85 (89)
T ss_dssp CC---
T ss_pred cCCCC
Confidence 98754
No 337
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.55 E-value=8.2e-15 Score=126.91 Aligned_cols=83 Identities=20% Similarity=0.297 Sum_probs=76.7
Q ss_pred cCceEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccC-CCCeeEEEEEecCHHHHHHHHh-cCCCeeCCeeeEEeec
Q 017897 273 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY-QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSPS 350 (364)
Q Consensus 273 ~~~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~-~~~kg~afV~F~~~e~A~~Al~-lng~~~~g~~l~V~~a 350 (364)
...++|||+|||..+++++|+++|++| |.|..|.|+.+. +.++|||||+|.+.++|.+|+. |||..|+|+.|+|.|+
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~-G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a 164 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEF-GTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLV 164 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHT-SCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc-CCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 456899999999999999999999996 999999999886 6789999999999999999999 9999999999999999
Q ss_pred CCCCCC
Q 017897 351 KTPVRP 356 (364)
Q Consensus 351 k~~~~~ 356 (364)
......
T Consensus 165 ~~~~~~ 170 (177)
T 2f3j_A 165 ASQIDL 170 (177)
T ss_dssp SSGGGG
T ss_pred cCCCCC
Confidence 876443
No 338
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.55 E-value=4.3e-14 Score=124.09 Aligned_cols=119 Identities=21% Similarity=0.237 Sum_probs=90.7
Q ss_pred CHHHHHHHHH-c--cccccCCeeEEEeeCCCCCCCCCCCCCCCCcc--ccccCceEEEEeCCCCCCCHHHHHHHhhhcCC
Q 017897 227 DEEGARAALS-L--AGTMLGFYPVRVLPSKTAIAPVNPTFLPRSED--EREMCSRTIYCTNIDKKVTQGDIKLFFESVCG 301 (364)
Q Consensus 227 ~~~~A~~al~-l--~g~~l~g~~i~V~~a~~~~~~~~~~~~~~~~~--~~~~~~~~l~V~nLp~~~tee~L~~~F~~~~G 301 (364)
+.+.+..|++ . ....+.+....|..... .+ .|...+ ......++|||+|||..+++++|+++|++| |
T Consensus 63 d~~~I~~Al~~S~~~~lev~ed~~~vrR~~~--~p-----~p~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~-G 134 (193)
T 2voo_A 63 DFNVIVEALSKSKAELMEISEDKTKIRRSPS--KP-----LPEVTDEYKNDVKNRSVYIKGFPTDATLDDIKEWLEDK-G 134 (193)
T ss_dssp CHHHHHHHHHTCSSCCEEECTTSSEEEECTT--SC-----CCCCCHHHHHHHHHTEEEEECCCTTCCHHHHHHHHTTS-C
T ss_pred CHHHHHHHHhhcccceEEEecccceEEeccc--CC-----CcccchhhhhccccCEEEecCCCCcCCHHHHHHHHhcC-C
Confidence 5677788887 5 44455555555655411 00 111111 123456899999999999999999999996 9
Q ss_pred ceeEEEEeccC-CCCeeEEEEEecCHHHHHHHHhcCCCeeCCeeeEEeecCCC
Q 017897 302 EVQRLRLLGDY-QHSTRIAFVEFAMAESAIAALNCSGAVLGSLPIRVSPSKTP 353 (364)
Q Consensus 302 ~I~~v~i~~d~-~~~kg~afV~F~~~e~A~~Al~lng~~~~g~~l~V~~ak~~ 353 (364)
.|.+|+|+++. +.++|||||+|.+.++|.+|+.+.+..++|++|.|.|++.-
T Consensus 135 ~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~~~~~Gr~l~V~~~~~y 187 (193)
T 2voo_A 135 QVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKDDY 187 (193)
T ss_dssp CEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTTCEETTEECEEEETTTC
T ss_pred CEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEhHHH
Confidence 99999999875 67899999999999999999994456999999999998764
No 339
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.55 E-value=1e-14 Score=117.26 Aligned_cols=76 Identities=18% Similarity=0.195 Sum_probs=66.6
Q ss_pred CceEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccCCCCeeEEEEEecCHHHHHHHHh-cCCCeeCCee-----eEE
Q 017897 274 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLP-----IRV 347 (364)
Q Consensus 274 ~~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~e~A~~Al~-lng~~~~g~~-----l~V 347 (364)
..++|||+|||..+++++|+++|++| |.|..|.|+.+ |||||+|.+.++|.+||. |||..|+|+. |+|
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~-G~v~~~~i~~~-----g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v 88 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREA-GDVCYADVYRD-----GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRV 88 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGG-SCEEEEEECTT-----SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhc-CCeEEEEEecC-----CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEe
Confidence 35899999999999999999999997 99999999887 799999999999999999 9999999998 888
Q ss_pred eecCCCCC
Q 017897 348 SPSKTPVR 355 (364)
Q Consensus 348 ~~ak~~~~ 355 (364)
..+.+...
T Consensus 89 ~~~~~~~~ 96 (115)
T 3beg_B 89 KVDGPRSP 96 (115)
T ss_dssp EECC----
T ss_pred ccCCCCCC
Confidence 88776543
No 340
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=9e-15 Score=111.53 Aligned_cols=79 Identities=16% Similarity=0.282 Sum_probs=67.9
Q ss_pred CceEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccCCCCeeEEEEEecCHHHHHHHHhcCCCeeCCeeeEEeecCCC
Q 017897 274 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALNCSGAVLGSLPIRVSPSKTP 353 (364)
Q Consensus 274 ~~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~e~A~~Al~lng~~~~g~~l~V~~ak~~ 353 (364)
..++|||+|||..+++++|+++|++| |.|.+|.++++ ++|||||+|.+.++|.+|+.. ...+.|++|+|.+++++
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~-G~i~~v~i~~~---~~g~afV~f~~~~~a~~~~~~-~~~~~g~~l~v~~a~~~ 78 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQY-GDVMDVFIPKP---FRAFAFVTFADDQIAQSLCGE-DLIIKGISVHISNAEPK 78 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTT-SCCCEEECCSS---CCSCCEEECSCHHHHHHTTTC-EEEETTEEEEEECCCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHc-CCeeEEEEecC---CCCEEEEEECCHHHHHHHhcC-CceeCCEEEEEEecCCC
Confidence 45899999999999999999999997 99999999876 678999999999999764332 34669999999999987
Q ss_pred CCCC
Q 017897 354 VRPR 357 (364)
Q Consensus 354 ~~~~ 357 (364)
....
T Consensus 79 ~~~~ 82 (88)
T 1wf0_A 79 HNSN 82 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 5544
No 341
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.54 E-value=2.2e-14 Score=117.19 Aligned_cols=75 Identities=23% Similarity=0.240 Sum_probs=68.2
Q ss_pred CcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceE-EEEEeCCHHHHHHHHH-ccccccCC--eeEEEeeCC
Q 017897 178 RRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRF-AFVEFTDEEGARAALS-LAGTMLGF--YPVRVLPSK 253 (364)
Q Consensus 178 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~~~~rG~-aFV~F~~~~~A~~al~-l~g~~l~g--~~i~V~~a~ 253 (364)
-..|||+||+..+|+++|+++|++||.|.+|++..+. +|| |||+|.+.++|.+|++ |+|..|.| ++|+|.+++
T Consensus 28 VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~---~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak 104 (130)
T 3zzy_A 28 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN---NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSK 104 (130)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEET---TEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECS
T ss_pred eEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCC---CCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecC
Confidence 3568999999999999999999999999999987643 588 9999999999999998 99999988 899999997
Q ss_pred CC
Q 017897 254 TA 255 (364)
Q Consensus 254 ~~ 255 (364)
..
T Consensus 105 ~~ 106 (130)
T 3zzy_A 105 LT 106 (130)
T ss_dssp CS
T ss_pred CC
Confidence 53
No 342
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=2.1e-14 Score=114.68 Aligned_cols=77 Identities=12% Similarity=0.214 Sum_probs=69.4
Q ss_pred cCceEEEE--eCCCCCCCHHHHHHHhhhcCCceeEEEEeccCCCCeeEEEEEecCHHHHHHHHh-cCCCee-----CCee
Q 017897 273 MCSRTIYC--TNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVL-----GSLP 344 (364)
Q Consensus 273 ~~~~~l~V--~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~e~A~~Al~-lng~~~-----~g~~ 344 (364)
.+.++||| +||+..+++++|+++|++| |.|.+|.|+++ +|||||+|.+.++|.+|+. |||..+ .|++
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~f-G~v~~v~i~~~----rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~ 97 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKC-GLVDALLMPPN----KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKIT 97 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHH-SCEEEEECCTT----CSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEE
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhc-CCeEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcE
Confidence 35689999 6699999999999999997 99999988764 5799999999999999999 999998 7999
Q ss_pred eEEeecCCCC
Q 017897 345 IRVSPSKTPV 354 (364)
Q Consensus 345 l~V~~ak~~~ 354 (364)
|.|.|++..+
T Consensus 98 l~v~~a~~~p 107 (114)
T 2cq2_A 98 LYLNFVEKVQ 107 (114)
T ss_dssp CEEEEESCCC
T ss_pred EEEEecccCc
Confidence 9999998653
No 343
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.54 E-value=8.3e-15 Score=119.50 Aligned_cols=78 Identities=26% Similarity=0.211 Sum_probs=70.2
Q ss_pred cCceEEEEeCCCCCCCHHHHHHHhhhcCCcee--EEEEeccC-CCCeeEEEEEecCHHHHHHHHhcCCCeeCCeeeEEee
Q 017897 273 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQ--RLRLLGDY-QHSTRIAFVEFAMAESAIAALNCSGAVLGSLPIRVSP 349 (364)
Q Consensus 273 ~~~~~l~V~nLp~~~tee~L~~~F~~~~G~I~--~v~i~~d~-~~~kg~afV~F~~~e~A~~Al~lng~~~~g~~l~V~~ 349 (364)
...++|||+|||+.+++++|+++|++| + |. +|.|+++. ++++|||||+|.+.++|.+||.+++..|+|+.|+|.+
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~-i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~~~~~l~gR~I~V~~ 117 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-E-IVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFK 117 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-C-EEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTTTTCCBTTBCCCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-C-ceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHHCCCEECCEEEEEEE
Confidence 345789999999999999999999996 5 66 89999875 7899999999999999999999777999999999998
Q ss_pred cCC
Q 017897 350 SKT 352 (364)
Q Consensus 350 ak~ 352 (364)
+.+
T Consensus 118 a~~ 120 (126)
T 2hgm_A 118 SSQ 120 (126)
T ss_dssp ECH
T ss_pred CCH
Confidence 754
No 344
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.54 E-value=5.1e-14 Score=111.25 Aligned_cols=80 Identities=19% Similarity=0.189 Sum_probs=70.7
Q ss_pred ccCceEEEEeCCCC-----CCCHHHHHHHhhhcCCceeEEEEeccC---CCCeeEEEEEecCHHHHHHHHh-cCCCeeCC
Q 017897 272 EMCSRTIYCTNIDK-----KVTQGDIKLFFESVCGEVQRLRLLGDY---QHSTRIAFVEFAMAESAIAALN-CSGAVLGS 342 (364)
Q Consensus 272 ~~~~~~l~V~nLp~-----~~tee~L~~~F~~~~G~I~~v~i~~d~---~~~kg~afV~F~~~e~A~~Al~-lng~~~~g 342 (364)
..+.++|+|+||.. .-++++|++.|++| |.|.+|.|++++ +.++|+|||+|.+.++|.+|+. |||..++|
T Consensus 5 ~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~-G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~G 83 (105)
T 2pe8_A 5 KCPTKVVLLRNMVGAGEVDEDLEVETKEECEKY-GKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGG 83 (105)
T ss_dssp GSCCSEEEEESSSCSCCC---CHHHHHHHGGGG-SCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhc-CCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 34678999999963 23689999999997 999999999874 4789999999999999999999 99999999
Q ss_pred eeeEEeecCC
Q 017897 343 LPIRVSPSKT 352 (364)
Q Consensus 343 ~~l~V~~ak~ 352 (364)
|.|+|.++.+
T Consensus 84 r~i~v~~a~~ 93 (105)
T 2pe8_A 84 RVVKACFYNL 93 (105)
T ss_dssp EECEEEECCH
T ss_pred cEEEEEEcCH
Confidence 9999999865
No 345
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.53 E-value=2.6e-14 Score=125.42 Aligned_cols=77 Identities=18% Similarity=0.241 Sum_probs=70.5
Q ss_pred CcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCCC-CCceEEEEEeCCHHHHHHHHHccccccCCeeEEEeeCCC
Q 017897 178 RRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN-SVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSKT 254 (364)
Q Consensus 178 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~~-~~rG~aFV~F~~~~~A~~al~l~g~~l~g~~i~V~~a~~ 254 (364)
.++|||+|||+++++++|+++|++||.|.+|+++++.. .++|||||+|.+.++|.+|++..+..+.|++|.|.|+..
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKDD 186 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTTCEETTEECEEEETTT
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEhHH
Confidence 57899999999999999999999999999999999874 469999999999999999999556699999999999753
No 346
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.52 E-value=2e-14 Score=109.67 Aligned_cols=71 Identities=17% Similarity=0.143 Sum_probs=63.3
Q ss_pred eEEEEeCCCCCCCHHH----HHHHhhhcCC-ceeEEEEeccCCCCeeEEEEEecCHHHHHHHHh-cCCCeeCCeeeEEee
Q 017897 276 RTIYCTNIDKKVTQGD----IKLFFESVCG-EVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSP 349 (364)
Q Consensus 276 ~~l~V~nLp~~~tee~----L~~~F~~~~G-~I~~v~i~~d~~~~kg~afV~F~~~e~A~~Al~-lng~~~~g~~l~V~~ 349 (364)
..|||+|||+.+++++ |+++|++| | .|.+|. .|+|||.|.+.++|.+|++ |+|..+.||+|+|+|
T Consensus 10 T~lYV~NL~~~~~~~~lk~~L~~lF~~y-GG~Vl~Vt--------gG~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~ 80 (96)
T 2diu_A 10 TLLYVYNLPANKDGKSVSNRLRRLSDNC-GGKVLSIT--------GCSAILRFINQDSAERAQKRMENEDVFGNRIIVSF 80 (96)
T ss_dssp EEEEEESCCTTSCHHHHHHHHHHHHHTT-TCCEEECC--------TTCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEES
T ss_pred eEEEEeCCCCcCCHHHHHHHHHHHHHHc-CCeeEEEe--------cCEEEEEECCHHHHHHHHHHhcCCccCCceEEEEe
Confidence 3499999999999988 55899995 7 999982 1799999999999999999 999999999999999
Q ss_pred cCCCCC
Q 017897 350 SKTPVR 355 (364)
Q Consensus 350 ak~~~~ 355 (364)
++....
T Consensus 81 A~~~sd 86 (96)
T 2diu_A 81 TPKNRE 86 (96)
T ss_dssp SCCSCC
T ss_pred cCCCcc
Confidence 998644
No 347
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.52 E-value=4.3e-14 Score=114.81 Aligned_cols=75 Identities=21% Similarity=0.209 Sum_probs=67.5
Q ss_pred ceEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccCCCCeeE-EEEEecCHHHHHHHHh-cCCCeeCC--eeeEEeec
Q 017897 275 SRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRI-AFVEFAMAESAIAALN-CSGAVLGS--LPIRVSPS 350 (364)
Q Consensus 275 ~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~~~~kg~-afV~F~~~e~A~~Al~-lng~~~~g--~~l~V~~a 350 (364)
...|||+||++.+++++|+++|++| |.|.+|.|+.. .|| |||+|.+.++|..|+. |||..|.| +.|+|.|+
T Consensus 25 vl~l~V~NL~~~vt~~~L~~~Fs~y-G~V~~v~i~~~----~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~A 99 (124)
T 2e5i_A 25 VLLLSIQNPLYPITVDVLYTVCNPV-GKVQRIVIFKR----NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYA 99 (124)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTT-SCEEEEEEEES----SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECC
T ss_pred EEEEEEcCcCCCCCHHHHHHHHHhc-CCEEEEEEEeC----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEe
Confidence 3567899999999999999999997 99999999763 276 9999999999999999 99999987 69999999
Q ss_pred CCCC
Q 017897 351 KTPV 354 (364)
Q Consensus 351 k~~~ 354 (364)
+++.
T Consensus 100 k~~~ 103 (124)
T 2e5i_A 100 RPTR 103 (124)
T ss_dssp SCSC
T ss_pred cCCc
Confidence 8764
No 348
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.52 E-value=2.3e-14 Score=115.56 Aligned_cols=76 Identities=17% Similarity=0.300 Sum_probs=67.0
Q ss_pred CcEEEEeCC----CCCCcHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEeCC----HHH----HHHHHH---cccc
Q 017897 178 RRTVYVSDI----DQQVTEEQLATLFLTCGQVVDCRICGDPNS--VLRFAFVEFTD----EEG----ARAALS---LAGT 240 (364)
Q Consensus 178 ~~~lfV~nL----p~~~te~~L~~~F~~~G~i~~~~i~~d~~~--~rG~aFV~F~~----~~~----A~~al~---l~g~ 240 (364)
+.+|||+|| |+.+++++|+++|+.||+|.+|.++.|+.+ ++|||||+|.+ +++ |.+|+. ++|.
T Consensus 2 p~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~ 81 (136)
T 2j8a_A 2 SCEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGC 81 (136)
T ss_dssp CCEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCE
T ss_pred CcEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCC
Confidence 368999999 999999999999999999999999999965 69999999996 333 778875 7999
Q ss_pred ccCCeeEEEeeCC
Q 017897 241 MLGFYPVRVLPSK 253 (364)
Q Consensus 241 ~l~g~~i~V~~a~ 253 (364)
.|.|++|+|...+
T Consensus 82 ~I~Gr~irV~ln~ 94 (136)
T 2j8a_A 82 FIMGFKFEVILNK 94 (136)
T ss_dssp EETTEEEEEEECC
T ss_pred eecCcEEEEEECc
Confidence 9999999999864
No 349
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.51 E-value=6.6e-14 Score=113.72 Aligned_cols=73 Identities=19% Similarity=0.152 Sum_probs=65.8
Q ss_pred cEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceE-EEEEeCCHHHHHHHHH-ccccccCC--eeEEEeeCCC
Q 017897 179 RTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRF-AFVEFTDEEGARAALS-LAGTMLGF--YPVRVLPSKT 254 (364)
Q Consensus 179 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~~~~rG~-aFV~F~~~~~A~~al~-l~g~~l~g--~~i~V~~a~~ 254 (364)
..|||+||++.+++++|+++|++||.|.+|+|... .|| |||+|.+.++|.+|++ |+|..|.| ++|+|.++++
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~----~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~ 101 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR----NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARP 101 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES----SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCSC
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEecC
Confidence 45789999999999999999999999999999753 286 9999999999999998 99999987 6999999875
Q ss_pred C
Q 017897 255 A 255 (364)
Q Consensus 255 ~ 255 (364)
.
T Consensus 102 ~ 102 (124)
T 2e5i_A 102 T 102 (124)
T ss_dssp S
T ss_pred C
Confidence 3
No 350
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.51 E-value=4e-14 Score=114.83 Aligned_cols=74 Identities=24% Similarity=0.307 Sum_probs=67.6
Q ss_pred CCCCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-ccccccCCeeEEEeeCC
Q 017897 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSK 253 (364)
Q Consensus 175 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~~~~rG~aFV~F~~~~~A~~al~-l~g~~l~g~~i~V~~a~ 253 (364)
+...++|||+|| ++++++|+++|++||.|.+|++. .++|||||+|.+.++|.+|++ |++..+.|++|.|.++.
T Consensus 36 ~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~----~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~ 109 (121)
T 2bz2_A 36 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD----PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIAR 109 (121)
T ss_dssp CCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECC
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe----CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeC
Confidence 445789999996 69999999999999999999996 457899999999999999997 99999999999999986
Q ss_pred C
Q 017897 254 T 254 (364)
Q Consensus 254 ~ 254 (364)
.
T Consensus 110 ~ 110 (121)
T 2bz2_A 110 K 110 (121)
T ss_dssp S
T ss_pred C
Confidence 4
No 351
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.51 E-value=3.7e-14 Score=115.06 Aligned_cols=78 Identities=21% Similarity=0.250 Sum_probs=69.5
Q ss_pred ccCceEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccCCCCeeEEEEEecCHHHHHHHHh-cCCCeeCCeeeEEeec
Q 017897 272 EMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSPS 350 (364)
Q Consensus 272 ~~~~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~e~A~~Al~-lng~~~~g~~l~V~~a 350 (364)
....++|||+|| .+++++|+++|++| |.|.+|.+.+ ++|||||+|.+.++|.+|+. |||..+.|+.|+|.|+
T Consensus 36 ~~~~~~lfVgnl--~~te~~L~~~F~~~-G~I~~v~i~~----~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a 108 (121)
T 2bz2_A 36 PRKGNTLYVYGE--DMTPTLLRGAFSPF-GNIIDLSMDP----PRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA 108 (121)
T ss_dssp CCCCCEEEEECS--SCCHHHHHHHHSTT-CCCSCEEEET----TTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHHcc-CCEEEEEEeC----CCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEe
Confidence 345789999996 69999999999997 9999999963 56799999999999999998 9999999999999999
Q ss_pred CCCCCC
Q 017897 351 KTPVRP 356 (364)
Q Consensus 351 k~~~~~ 356 (364)
+++...
T Consensus 109 ~~~~~~ 114 (121)
T 2bz2_A 109 RKQPML 114 (121)
T ss_dssp CSSCC-
T ss_pred CCCCCC
Confidence 887443
No 352
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.50 E-value=9.5e-14 Score=109.69 Aligned_cols=77 Identities=22% Similarity=0.208 Sum_probs=68.5
Q ss_pred CCcEEEEeCCCC-----CCcHHHHHHHhhcCCCeeEEEEecCCC---CCceEEEEEeCCHHHHHHHHH-ccccccCCeeE
Q 017897 177 IRRTVYVSDIDQ-----QVTEEQLATLFLTCGQVVDCRICGDPN---SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPV 247 (364)
Q Consensus 177 ~~~~lfV~nLp~-----~~te~~L~~~F~~~G~i~~~~i~~d~~---~~rG~aFV~F~~~~~A~~al~-l~g~~l~g~~i 247 (364)
.+++|+|.||.. +-++++|+++|++||.|.++.|+.++. .++|||||+|.+.++|.+|++ |||..+.|++|
T Consensus 7 ~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~i 86 (105)
T 2pe8_A 7 PTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRVV 86 (105)
T ss_dssp CCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcEE
Confidence 468999999962 236899999999999999999999863 469999999999999999998 99999999999
Q ss_pred EEeeCC
Q 017897 248 RVLPSK 253 (364)
Q Consensus 248 ~V~~a~ 253 (364)
.|.++.
T Consensus 87 ~v~~a~ 92 (105)
T 2pe8_A 87 KACFYN 92 (105)
T ss_dssp EEEECC
T ss_pred EEEEcC
Confidence 999974
No 353
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.50 E-value=9.4e-14 Score=105.35 Aligned_cols=72 Identities=22% Similarity=0.437 Sum_probs=65.7
Q ss_pred CceEEEEeCCCCCCCHHHHHHHhhhcC---C-------ceeEEEEeccCCCCeeEEEEEecCHHHHHHHHhcCCCeeCCe
Q 017897 274 CSRTIYCTNIDKKVTQGDIKLFFESVC---G-------EVQRLRLLGDYQHSTRIAFVEFAMAESAIAALNCSGAVLGSL 343 (364)
Q Consensus 274 ~~~~l~V~nLp~~~tee~L~~~F~~~~---G-------~I~~v~i~~d~~~~kg~afV~F~~~e~A~~Al~lng~~~~g~ 343 (364)
..++|||+|||..+++++|+++|++|. | .|.++.+.++ +|||||+|.+.++|.+|+.|||..++|+
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~----kg~afV~f~~~~~a~~A~~l~g~~~~g~ 80 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD----KNFAFLEFRSVDETTQAMAFDGIIFQGQ 80 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS----SSEEEEEESSHHHHHHHGGGTTCEETTE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC----CcEEEEEcCCHHHHHHHHhcCCCEECCe
Confidence 458999999999999999999999941 6 8999999875 5799999999999999999999999999
Q ss_pred eeEEee
Q 017897 344 PIRVSP 349 (364)
Q Consensus 344 ~l~V~~ 349 (364)
.|+|..
T Consensus 81 ~l~V~r 86 (87)
T 2hzc_A 81 SLKIRR 86 (87)
T ss_dssp ECEEEC
T ss_pred EEEEeC
Confidence 999974
No 354
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.48 E-value=9.9e-14 Score=105.84 Aligned_cols=69 Identities=19% Similarity=0.203 Sum_probs=61.8
Q ss_pred CcE-EEEeCCCCCCcHHH----HHHHhhcC-CCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-ccccccCCeeEEEe
Q 017897 178 RRT-VYVSDIDQQVTEEQ----LATLFLTC-GQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVL 250 (364)
Q Consensus 178 ~~~-lfV~nLp~~~te~~----L~~~F~~~-G~i~~~~i~~d~~~~rG~aFV~F~~~~~A~~al~-l~g~~l~g~~i~V~ 250 (364)
..+ |||+|||..+++++ |+++|++| |+|.+|. .|||||.|.+.++|.+|++ |+|..+.||+|+|.
T Consensus 8 ~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~Vt--------gG~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~ 79 (96)
T 2diu_A 8 CHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSIT--------GCSAILRFINQDSAERAQKRMENEDVFGNRIIVS 79 (96)
T ss_dssp SSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEECC--------TTCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred cceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEEe--------cCEEEEEECCHHHHHHHHHHhcCCccCCceEEEE
Confidence 344 99999999999987 55899999 5999981 2899999999999999998 99999999999999
Q ss_pred eCCC
Q 017897 251 PSKT 254 (364)
Q Consensus 251 ~a~~ 254 (364)
+++.
T Consensus 80 ~A~~ 83 (96)
T 2diu_A 80 FTPK 83 (96)
T ss_dssp SSCC
T ss_pred ecCC
Confidence 9864
No 355
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.47 E-value=8.6e-14 Score=125.50 Aligned_cols=76 Identities=21% Similarity=0.253 Sum_probs=69.4
Q ss_pred CCCCcEEEEeCCCCCC---------cHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-cccccc--
Q 017897 175 EVIRRTVYVSDIDQQV---------TEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTML-- 242 (364)
Q Consensus 175 ~~~~~~lfV~nLp~~~---------te~~L~~~F~~~G~i~~~~i~~d~~~~rG~aFV~F~~~~~A~~al~-l~g~~l-- 242 (364)
....++||||||+..+ ++++|+++|++||.|.+|+|+.+ +|||||+|.+.++|+.|++ |+|..|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~----kG~AFV~F~~~~~Ae~A~~am~g~~l~~ 206 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES----KNCGFVKFKYQANAEFAKEAMSNQTLLL 206 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG----GTEEEEEESSHHHHHHHHHHHTTCCCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC----CCEEEEEeCCHHHHHHHHHHhCCCEEec
Confidence 3456899999999998 79999999999999999999964 6899999999999999998 999999
Q ss_pred ----------CCeeEEEeeCCC
Q 017897 243 ----------GFYPVRVLPSKT 254 (364)
Q Consensus 243 ----------~g~~i~V~~a~~ 254 (364)
.|+.|.|.|+..
T Consensus 207 ~~~~e~~~~~~gr~L~V~wA~~ 228 (240)
T 3u1l_A 207 PSDKEWDDRREGTGLLVKWANE 228 (240)
T ss_dssp TTSTTGGGGGGSCCCEEEECC-
T ss_pred cccccccccCCCCEEEEEEccC
Confidence 899999999864
No 356
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=5.4e-13 Score=106.53 Aligned_cols=81 Identities=20% Similarity=0.253 Sum_probs=69.5
Q ss_pred ccCceEEEEeCCCCCCC-----------HHHHHHHhhhcCCceeEEEEeccCCCCeeEEEEEecCHHHHHHHHh-cCCCe
Q 017897 272 EMCSRTIYCTNIDKKVT-----------QGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAV 339 (364)
Q Consensus 272 ~~~~~~l~V~nLp~~~t-----------ee~L~~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~e~A~~Al~-lng~~ 339 (364)
..+.++|+|+||..... +++|+++|++| |.|.+|.| .+. .++|||||+|.+.++|.+|+. |||..
T Consensus 12 ~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~-G~v~~v~i-~~~-~~~G~afV~f~~~~~A~~Ai~~lng~~ 88 (112)
T 2dit_A 12 MRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKF-GQIRKLLL-FDR-HPDGVASVSFRDPEEADYCIQTLDGRW 88 (112)
T ss_dssp CCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGT-SCCSEEEE-ETT-CTTCEEEEECSCHHHHHHHHHHSTTCE
T ss_pred CCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHcc-CCEeEEEE-ecC-CCCEEEEEEECCHHHHHHHHHHcCCCE
Confidence 45678999999954432 58999999997 99999966 444 388999999999999999999 99999
Q ss_pred eCCeeeEEeecCCCCC
Q 017897 340 LGSLPIRVSPSKTPVR 355 (364)
Q Consensus 340 ~~g~~l~V~~ak~~~~ 355 (364)
|+|++|+|.|+++...
T Consensus 89 ~~gr~l~v~~a~~~~~ 104 (112)
T 2dit_A 89 FGGRQITAQAWDGTTD 104 (112)
T ss_dssp ETTEECEEEECCSCCC
T ss_pred ECCcEEEEEEeCCCCC
Confidence 9999999999987643
No 357
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.45 E-value=8.7e-14 Score=111.48 Aligned_cols=73 Identities=16% Similarity=0.211 Sum_probs=61.0
Q ss_pred CceEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccC-----CCCeeEEEEEecCHHHHHHHHh-cCCCeeCCeeeEE
Q 017897 274 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY-----QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRV 347 (364)
Q Consensus 274 ~~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~-----~~~kg~afV~F~~~e~A~~Al~-lng~~~~g~~l~V 347 (364)
..++|||+|||..+++++|+++|++| |.|. +.++.+. ++++|||||+|.+.++|.+||. |+ .++|+.|.+
T Consensus 7 ~~~~lfVgnLp~~~te~~L~~~F~~~-G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~ 82 (114)
T 2dnl_A 7 GSRKVFVGGLPPDIDEDEITASFRRF-GPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLC 82 (114)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHTTTT-CCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEE
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhc-CCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEe
Confidence 45899999999999999999999997 9999 8777764 5789999999999999999998 73 255555555
Q ss_pred eec
Q 017897 348 SPS 350 (364)
Q Consensus 348 ~~a 350 (364)
..+
T Consensus 83 ~~~ 85 (114)
T 2dnl_A 83 VSS 85 (114)
T ss_dssp ECC
T ss_pred ccC
Confidence 443
No 358
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.45 E-value=1.9e-13 Score=110.15 Aligned_cols=77 Identities=18% Similarity=0.303 Sum_probs=68.0
Q ss_pred eEEEEeCC----CCCCCHHHHHHHhhhcCCceeEEEEeccC--CCCeeEEEEEecC----HHH----HHHHHh---cCCC
Q 017897 276 RTIYCTNI----DKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAM----AES----AIAALN---CSGA 338 (364)
Q Consensus 276 ~~l~V~nL----p~~~tee~L~~~F~~~~G~I~~v~i~~d~--~~~kg~afV~F~~----~e~----A~~Al~---lng~ 338 (364)
..|||+|| |+.+++++|+.+|++| |+|.+|.++.|+ |.++|||||+|.+ +++ |.+|+. +||.
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~f-GeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~ 81 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKY-GEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGC 81 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTT-SCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhc-CCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCC
Confidence 68999999 9999999999999997 999999999997 7899999999996 333 788876 6999
Q ss_pred eeCCeeeEEeecCCC
Q 017897 339 VLGSLPIRVSPSKTP 353 (364)
Q Consensus 339 ~~~g~~l~V~~ak~~ 353 (364)
.|+|++|+|.+-+..
T Consensus 82 ~I~Gr~irV~ln~~g 96 (136)
T 2j8a_A 82 FIMGFKFEVILNKHS 96 (136)
T ss_dssp EETTEEEEEEECCTT
T ss_pred eecCcEEEEEECccc
Confidence 999999999987654
No 359
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.45 E-value=1.2e-13 Score=124.58 Aligned_cols=82 Identities=23% Similarity=0.380 Sum_probs=69.0
Q ss_pred cCceEEEEeCCCCCC---------CHHHHHHHhhhcCCceeEEEEeccCCCCeeEEEEEecCHHHHHHHHh-cCCCee--
Q 017897 273 MCSRTIYCTNIDKKV---------TQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVL-- 340 (364)
Q Consensus 273 ~~~~~l~V~nLp~~~---------tee~L~~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~e~A~~Al~-lng~~~-- 340 (364)
...++|||+||+..+ ++++|+.+|++| |.|.+|+|+++ +|||||+|.+.++|..|+. |+|..|
T Consensus 132 ~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~f-G~I~~v~v~~~----kG~AFV~F~~~~~Ae~A~~am~g~~l~~ 206 (240)
T 3u1l_A 132 KKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRL-GDIDRIRYVES----KNCGFVKFKYQANAEFAKEAMSNQTLLL 206 (240)
T ss_dssp CCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTT-SCEEEEEEEGG----GTEEEEEESSHHHHHHHHHHHTTCCCCC
T ss_pred cCCceeecCCCChhhhcccccccCcHHHHHHHHHcc-CCEEEEEEECC----CCEEEEEeCCHHHHHHHHHHhCCCEEec
Confidence 346899999999998 799999999997 99999999874 5799999999999999999 999999
Q ss_pred ----------CCeeeEEeecCCCCCCCCC
Q 017897 341 ----------GSLPIRVSPSKTPVRPRAP 359 (364)
Q Consensus 341 ----------~g~~l~V~~ak~~~~~~~~ 359 (364)
.|+.|.|.||+..+.|...
T Consensus 207 ~~~~e~~~~~~gr~L~V~wA~~~pnp~~~ 235 (240)
T 3u1l_A 207 PSDKEWDDRREGTGLLVKWANEDPDPAAQ 235 (240)
T ss_dssp TTSTTGGGGGGSCCCEEEECC--------
T ss_pred cccccccccCCCCEEEEEEccCCCCHHHh
Confidence 8999999999987666553
No 360
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=7.3e-13 Score=105.73 Aligned_cols=78 Identities=21% Similarity=0.172 Sum_probs=67.0
Q ss_pred CCCCcEEEEeCCCCCCc-----------HHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-cccccc
Q 017897 175 EVIRRTVYVSDIDQQVT-----------EEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTML 242 (364)
Q Consensus 175 ~~~~~~lfV~nLp~~~t-----------e~~L~~~F~~~G~i~~~~i~~d~~~~rG~aFV~F~~~~~A~~al~-l~g~~l 242 (364)
+...++|+|.||..... +++|+++|++||.|.+|.| .++ .++|||||+|.+.++|.+|++ |||..+
T Consensus 12 ~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~-~~~G~afV~f~~~~~A~~Ai~~lng~~~ 89 (112)
T 2dit_A 12 MRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR-HPDGVASVSFRDPEEADYCIQTLDGRWF 89 (112)
T ss_dssp CCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT-CTTCEEEEECSCHHHHHHHHHHSTTCEE
T ss_pred CCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC-CCCEEEEEEECCHHHHHHHHHHcCCCEE
Confidence 34578999999944332 6899999999999999966 454 378999999999999999997 999999
Q ss_pred CCeeEEEeeCCC
Q 017897 243 GFYPVRVLPSKT 254 (364)
Q Consensus 243 ~g~~i~V~~a~~ 254 (364)
.|++|.|.++.+
T Consensus 90 ~gr~l~v~~a~~ 101 (112)
T 2dit_A 90 GGRQITAQAWDG 101 (112)
T ss_dssp TTEECEEEECCS
T ss_pred CCcEEEEEEeCC
Confidence 999999999854
No 361
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.41 E-value=5.9e-13 Score=105.12 Aligned_cols=79 Identities=13% Similarity=0.134 Sum_probs=68.6
Q ss_pred cCceEEEEeCC--CCCCC--------HHHHHHHhhhcCCceeEEEEeccC----CCCeeEEEEEecCHHHHHHHHh-cCC
Q 017897 273 MCSRTIYCTNI--DKKVT--------QGDIKLFFESVCGEVQRLRLLGDY----QHSTRIAFVEFAMAESAIAALN-CSG 337 (364)
Q Consensus 273 ~~~~~l~V~nL--p~~~t--------ee~L~~~F~~~~G~I~~v~i~~d~----~~~kg~afV~F~~~e~A~~Al~-lng 337 (364)
.+.+.|.|+|+ |..+. +++|++.|++| |.|.+|.|+++. +.++|+|||+|.+.++|.+|+. |||
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~-G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG 81 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKY-GLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTG 81 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTT-SCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHcc-CCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCC
Confidence 35689999998 44443 36899999997 999999999875 2578999999999999999999 999
Q ss_pred CeeCCeeeEEeecCC
Q 017897 338 AVLGSLPIRVSPSKT 352 (364)
Q Consensus 338 ~~~~g~~l~V~~ak~ 352 (364)
..++||.|+|.|+..
T Consensus 82 ~~f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 82 RKFANRVVVTKYCDP 96 (105)
T ss_dssp CEETTEECEEEEECH
T ss_pred CEeCCCEEEEEEeCH
Confidence 999999999999754
No 362
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.37 E-value=1.4e-12 Score=105.15 Aligned_cols=79 Identities=16% Similarity=0.223 Sum_probs=68.4
Q ss_pred cCceEEEEeCCCC--CC---CHHHHHHHhhhcCCceeEEEEeccC------CCCeeEEEEEecCHHHHHHHHh-cCCCee
Q 017897 273 MCSRTIYCTNIDK--KV---TQGDIKLFFESVCGEVQRLRLLGDY------QHSTRIAFVEFAMAESAIAALN-CSGAVL 340 (364)
Q Consensus 273 ~~~~~l~V~nLp~--~~---tee~L~~~F~~~~G~I~~v~i~~d~------~~~kg~afV~F~~~e~A~~Al~-lng~~~ 340 (364)
.+.++|+|+|+-. .+ .+++|++.|++| |.|.+|.|+++. +.++|++||+|.+.++|.+|+. |||..|
T Consensus 18 ~ps~vl~L~Nm~~~~el~ddleedl~eef~k~-G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f 96 (118)
T 3ue2_A 18 QESTVMVLRNMVDPKDIDDDLEGEVTEECGKF-GAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWF 96 (118)
T ss_dssp HSCCEEEEESCSCGGGCCTTHHHHHHHHHTTT-SCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHHhcc-CCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEE
Confidence 4678999999842 22 368999999997 999999999874 2467999999999999999999 999999
Q ss_pred CCeeeEEeecCC
Q 017897 341 GSLPIRVSPSKT 352 (364)
Q Consensus 341 ~g~~l~V~~ak~ 352 (364)
+||.|+|.|+..
T Consensus 97 ~GR~i~v~~~~~ 108 (118)
T 3ue2_A 97 AGRKVVAEVYDQ 108 (118)
T ss_dssp TTEECEEEEECH
T ss_pred CCcEEEEEEcCh
Confidence 999999999753
No 363
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.37 E-value=2.5e-13 Score=107.11 Aligned_cols=70 Identities=19% Similarity=0.365 Sum_probs=62.2
Q ss_pred EeCCCCCCcHHHHHHHh------------hcCCCeeEEEEecCC-CCCceEEEEEeCCHHHHHHHHH-ccccccCCeeEE
Q 017897 183 VSDIDQQVTEEQLATLF------------LTCGQVVDCRICGDP-NSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVR 248 (364)
Q Consensus 183 V~nLp~~~te~~L~~~F------------~~~G~i~~~~i~~d~-~~~rG~aFV~F~~~~~A~~al~-l~g~~l~g~~i~ 248 (364)
+.+||..+++++|++.| ++||.|.+|+|+++. +.++|||||+|.++++|.+|++ |||..+.|++|.
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~ 99 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIH 99 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEE
Confidence 56788888888777666 999999999999886 3579999999999999999998 999999999999
Q ss_pred EeeC
Q 017897 249 VLPS 252 (364)
Q Consensus 249 V~~a 252 (364)
|.++
T Consensus 100 v~~s 103 (104)
T 1jmt_A 100 AELS 103 (104)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 9885
No 364
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.37 E-value=3.2e-13 Score=106.48 Aligned_cols=70 Identities=20% Similarity=0.330 Sum_probs=60.6
Q ss_pred EeCCCCCCCHHHHHHHh------------hhcCCceeEEEEeccC-CCCeeEEEEEecCHHHHHHHHh-cCCCeeCCeee
Q 017897 280 CTNIDKKVTQGDIKLFF------------ESVCGEVQRLRLLGDY-QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPI 345 (364)
Q Consensus 280 V~nLp~~~tee~L~~~F------------~~~~G~I~~v~i~~d~-~~~kg~afV~F~~~e~A~~Al~-lng~~~~g~~l 345 (364)
+.|||..+++++|++.| ++| |.|.+|.|+++. ++++|||||+|.+.++|.+|+. |||..++|+.|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~-G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKY-GEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-CCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccC-CceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 44566666777766666 996 999999999876 6789999999999999999999 99999999999
Q ss_pred EEeec
Q 017897 346 RVSPS 350 (364)
Q Consensus 346 ~V~~a 350 (364)
+|.|+
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99986
No 365
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.35 E-value=1.9e-12 Score=102.19 Aligned_cols=77 Identities=17% Similarity=0.128 Sum_probs=66.9
Q ss_pred CCcEEEEeCC--CCCCc--------HHHHHHHhhcCCCeeEEEEecCCC----CCceEEEEEeCCHHHHHHHHH-ccccc
Q 017897 177 IRRTVYVSDI--DQQVT--------EEQLATLFLTCGQVVDCRICGDPN----SVLRFAFVEFTDEEGARAALS-LAGTM 241 (364)
Q Consensus 177 ~~~~lfV~nL--p~~~t--------e~~L~~~F~~~G~i~~~~i~~d~~----~~rG~aFV~F~~~~~A~~al~-l~g~~ 241 (364)
.++.|.+.|+ |.++. +++|++.|++||.|.+++|++++. .++|||||+|.+.++|.+|++ |||..
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 3678899987 33443 468999999999999999998864 368999999999999999998 99999
Q ss_pred cCCeeEEEeeCC
Q 017897 242 LGFYPVRVLPSK 253 (364)
Q Consensus 242 l~g~~i~V~~a~ 253 (364)
+.||+|.|.++.
T Consensus 84 f~GR~i~v~~~~ 95 (105)
T 3v4m_A 84 FANRVVVTKYCD 95 (105)
T ss_dssp ETTEECEEEEEC
T ss_pred eCCCEEEEEEeC
Confidence 999999999864
No 366
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.32 E-value=1e-11 Score=96.99 Aligned_cols=67 Identities=24% Similarity=0.252 Sum_probs=58.9
Q ss_pred CCCCHHHHHHHhhhcCCceeEEEEeccCCCCeeEEEEEecCHHHHHHHHh-cCCCeeCCeeeEEeecCCCCCCC
Q 017897 285 KKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSPSKTPVRPR 357 (364)
Q Consensus 285 ~~~tee~L~~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~e~A~~Al~-lng~~~~g~~l~V~~ak~~~~~~ 357 (364)
..+++++|+++|++| |.|.+|.|++ .++|||||+|.+.++|.+|+. +++ +.|++|+|.|++++...+
T Consensus 27 ~~~te~~L~~~F~~~-G~V~~v~i~~---~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a~~~~~~~ 94 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKY-GEVLNLVLSS---KKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWLEGQPQDA 94 (100)
T ss_dssp CSCCHHHHHHHHHTT-SCEEEEEEES---SSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECSSCCCCCC
T ss_pred CCCCHHHHHHHHHhc-CCEEEEEEcc---CCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEccCCCCCC
Confidence 568999999999997 9999999984 578999999999999999999 665 579999999998875433
No 367
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.29 E-value=1.3e-11 Score=96.30 Aligned_cols=62 Identities=21% Similarity=0.236 Sum_probs=55.9
Q ss_pred CCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-ccccccCCeeEEEeeCCC
Q 017897 188 QQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSKT 254 (364)
Q Consensus 188 ~~~te~~L~~~F~~~G~i~~~~i~~d~~~~rG~aFV~F~~~~~A~~al~-l~g~~l~g~~i~V~~a~~ 254 (364)
..+++++|+++|++||.|.+|.|+. .++|||||+|.++++|.+|++ +++ +.|++|.|.|++.
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~~---~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a~~ 89 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLSS---KKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWLEG 89 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEES---SSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECSSC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEcc---CCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEccC
Confidence 6799999999999999999999983 578999999999999999998 555 6799999999864
No 368
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.28 E-value=7.9e-12 Score=100.65 Aligned_cols=77 Identities=16% Similarity=0.163 Sum_probs=66.9
Q ss_pred CCcEEEEeCCC--CCC---cHHHHHHHhhcCCCeeEEEEecCCC------CCceEEEEEeCCHHHHHHHHH-ccccccCC
Q 017897 177 IRRTVYVSDID--QQV---TEEQLATLFLTCGQVVDCRICGDPN------SVLRFAFVEFTDEEGARAALS-LAGTMLGF 244 (364)
Q Consensus 177 ~~~~lfV~nLp--~~~---te~~L~~~F~~~G~i~~~~i~~d~~------~~rG~aFV~F~~~~~A~~al~-l~g~~l~g 244 (364)
.+++|++.|+- .++ -+++|++.|++||.|.+|.|+.++. .++||+||+|.+.++|.+|++ |||..+.|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 46899999983 222 3689999999999999999998753 257999999999999999998 99999999
Q ss_pred eeEEEeeCC
Q 017897 245 YPVRVLPSK 253 (364)
Q Consensus 245 ~~i~V~~a~ 253 (364)
|.|.|.++.
T Consensus 99 R~i~v~~~~ 107 (118)
T 3ue2_A 99 RKVVAEVYD 107 (118)
T ss_dssp EECEEEEEC
T ss_pred cEEEEEEcC
Confidence 999999863
No 369
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.24 E-value=2.6e-11 Score=96.96 Aligned_cols=75 Identities=17% Similarity=0.147 Sum_probs=64.6
Q ss_pred CceEEEEeCCCCCCC----------HHHHHHHhhhcCCceeEEEEeccCCCCeeEEEEEecCHHHHHHHHh-cCCCeeCC
Q 017897 274 CSRTIYCTNIDKKVT----------QGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGS 342 (364)
Q Consensus 274 ~~~~l~V~nLp~~~t----------ee~L~~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~e~A~~Al~-lng~~~~g 342 (364)
+.++|.|+|+=..-. +++|++.|++| |.|.+|.|.++. ++|++||+|.+.++|.+|+. |||..|+|
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kf-G~V~~v~i~~~~--~~G~~fV~f~~~e~A~~Ai~~lnG~~f~G 82 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKH-GGVIHIYVDKNS--AQGNVYVKCPSIAAAIAAVNALHGRWFAG 82 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTT-TCCSEEEECTTC--TTCCEEEECSSHHHHHHHHHHHTTCEETT
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhcc-CCEEEEEEecCC--CcEEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 467899999843221 35889999997 999999997764 58999999999999999999 99999999
Q ss_pred eeeEEeecC
Q 017897 343 LPIRVSPSK 351 (364)
Q Consensus 343 ~~l~V~~ak 351 (364)
|.|+|.|+.
T Consensus 83 R~i~v~~~~ 91 (114)
T 3s6e_A 83 KMITAAYVP 91 (114)
T ss_dssp EECEEEEEC
T ss_pred EEEEEEEEc
Confidence 999999974
No 370
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.22 E-value=2.1e-11 Score=115.59 Aligned_cols=74 Identities=16% Similarity=0.225 Sum_probs=63.8
Q ss_pred CCCcEEEEeC--CCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-cccccc---CCe--eE
Q 017897 176 VIRRTVYVSD--IDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTML---GFY--PV 247 (364)
Q Consensus 176 ~~~~~lfV~n--Lp~~~te~~L~~~F~~~G~i~~~~i~~d~~~~rG~aFV~F~~~~~A~~al~-l~g~~l---~g~--~i 247 (364)
...++||||| |+..+|+++|+++|++||+|.+|.+.. +||||||+|.+.++|++|++ |||..+ .|+ +|
T Consensus 16 ~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~----~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~l 91 (345)
T 3tht_A 16 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP----NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITL 91 (345)
T ss_dssp SCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT----TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEEC
T ss_pred CCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC----CCCEEEEEECCHHHHHHHHHHhCCCccccccCCceEE
Confidence 3568999999 578999999999999999999987754 57999999999999999998 999987 244 67
Q ss_pred EEeeCC
Q 017897 248 RVLPSK 253 (364)
Q Consensus 248 ~V~~a~ 253 (364)
.|.++.
T Consensus 92 y~~~~~ 97 (345)
T 3tht_A 92 YLNFVE 97 (345)
T ss_dssp EEEECS
T ss_pred EEEEee
Confidence 887764
No 371
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.21 E-value=2.8e-11 Score=114.68 Aligned_cols=76 Identities=13% Similarity=0.221 Sum_probs=65.7
Q ss_pred ccCceEEEEeC--CCCCCCHHHHHHHhhhcCCceeEEEEeccCCCCeeEEEEEecCHHHHHHHHh-cCCCeeC---Ce--
Q 017897 272 EMCSRTIYCTN--IDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLG---SL-- 343 (364)
Q Consensus 272 ~~~~~~l~V~n--Lp~~~tee~L~~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~e~A~~Al~-lng~~~~---g~-- 343 (364)
..+.++|||+| |+..+++++|+++|++| |.|.+|.+.+ +||||||+|.+.++|.+|++ |||.++. |+
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~-G~V~~v~~~~----~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~ 89 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKC-GLVDALLMPP----NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKI 89 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTT-SCEEEEECCT----TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhc-CCeEEEEEeC----CCCEEEEEECCHHHHHHHHHHhCCCccccccCCce
Confidence 45678999999 57899999999999997 9999988865 46899999999999999999 9999882 44
Q ss_pred eeEEeecCC
Q 017897 344 PIRVSPSKT 352 (364)
Q Consensus 344 ~l~V~~ak~ 352 (364)
.|.|.|++.
T Consensus 90 ~ly~~~~~~ 98 (345)
T 3tht_A 90 TLYLNFVEK 98 (345)
T ss_dssp ECEEEECSS
T ss_pred EEEEEEeec
Confidence 688888753
No 372
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.18 E-value=7.3e-11 Score=94.33 Aligned_cols=76 Identities=12% Similarity=0.087 Sum_probs=63.5
Q ss_pred CCCcEEEEeCCCC--CC--------cHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-ccccccCC
Q 017897 176 VIRRTVYVSDIDQ--QV--------TEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGF 244 (364)
Q Consensus 176 ~~~~~lfV~nLp~--~~--------te~~L~~~F~~~G~i~~~~i~~d~~~~rG~aFV~F~~~~~A~~al~-l~g~~l~g 244 (364)
..++.|.+.|+=. +. -+++|++.|++||.|.++.|.++. ++|||||+|.+.++|.+|++ |||..+.|
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~--~~G~~fV~f~~~e~A~~Ai~~lnG~~f~G 82 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS--AQGNVYVKCPSIAAAIAAVNALHGRWFAG 82 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC--TTCCEEEECSSHHHHHHHHHHHTTCEETT
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC--CcEEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 3467788888632 21 136889999999999999997653 58999999999999999998 99999999
Q ss_pred eeEEEeeCC
Q 017897 245 YPVRVLPSK 253 (364)
Q Consensus 245 ~~i~V~~a~ 253 (364)
+.|.|.++.
T Consensus 83 R~i~v~~~~ 91 (114)
T 3s6e_A 83 KMITAAYVP 91 (114)
T ss_dssp EECEEEEEC
T ss_pred EEEEEEEEc
Confidence 999999874
No 373
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.02 E-value=1e-09 Score=82.89 Aligned_cols=73 Identities=22% Similarity=0.299 Sum_probs=62.3
Q ss_pred CceEEEEeCCC----CCCCH----HHHHHHhhhcCCceeEEEEeccCCCCeeEEEEEecCHHHHHHHHhcCCCeeCCeee
Q 017897 274 CSRTIYCTNID----KKVTQ----GDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALNCSGAVLGSLPI 345 (364)
Q Consensus 274 ~~~~l~V~nLp----~~~te----e~L~~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~e~A~~Al~lng~~~~g~~l 345 (364)
+..||+|.-.+ ..+-+ .+|.+.|.+| |.|..++++.+. +||+|.+.++|.+|+.|||..++||.|
T Consensus 6 pd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~-G~Vi~vr~~~d~------~fVtF~d~~sAlaAi~mnG~~v~Gr~L 78 (91)
T 2dnr_A 6 SGGTVLVSIKSSLPENNFFDDALIDELLQQFASF-GEVILIRFVEDK------MWVTFLEGSSALNVLSLNGKELLNRTI 78 (91)
T ss_dssp SSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTT-CCEEEEEECSSS------EEEEESSHHHHHHGGGGTTCEETTEEE
T ss_pred CCCeEEEEeccCccccccCCHHHHHHHHHHHHhC-CCeEEEEEecCC------EEEEECChHHHHHHHhcCCeEeCCeEE
Confidence 44678887766 23444 6799999996 999999999984 899999999999999999999999999
Q ss_pred EEeecCCC
Q 017897 346 RVSPSKTP 353 (364)
Q Consensus 346 ~V~~ak~~ 353 (364)
+|.++++.
T Consensus 79 kV~lkt~d 86 (91)
T 2dnr_A 79 TIALKSPS 86 (91)
T ss_dssp EEEECCCS
T ss_pred EEEeCCCC
Confidence 99998763
No 374
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.97 E-value=2.3e-09 Score=80.96 Aligned_cols=71 Identities=25% Similarity=0.297 Sum_probs=61.3
Q ss_pred CcEEEEeCCCC----CCcH----HHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHHccccccCCeeEEE
Q 017897 178 RRTVYVSDIDQ----QVTE----EQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRV 249 (364)
Q Consensus 178 ~~~lfV~nLp~----~~te----~~L~~~F~~~G~i~~~~i~~d~~~~rG~aFV~F~~~~~A~~al~l~g~~l~g~~i~V 249 (364)
..||+|.-++. ++-. .+|.+.|.+||.|..+++..|+ +||+|.+.++|.+|++|+|..+.||.|+|
T Consensus 7 d~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~------~fVtF~d~~sAlaAi~mnG~~v~Gr~LkV 80 (91)
T 2dnr_A 7 GGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK------MWVTFLEGSSALNVLSLNGKELLNRTITI 80 (91)
T ss_dssp SCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS------EEEEESSHHHHHHGGGGTTCEETTEEEEE
T ss_pred CCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC------EEEEECChHHHHHHHhcCCeEeCCeEEEE
Confidence 57888887762 3333 6799999999999999999974 89999999999999999999999999999
Q ss_pred eeCCC
Q 017897 250 LPSKT 254 (364)
Q Consensus 250 ~~a~~ 254 (364)
..+.+
T Consensus 81 ~lkt~ 85 (91)
T 2dnr_A 81 ALKSP 85 (91)
T ss_dssp EECCC
T ss_pred EeCCC
Confidence 99753
No 375
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.95 E-value=3.3e-09 Score=85.11 Aligned_cols=72 Identities=15% Similarity=0.053 Sum_probs=64.4
Q ss_pred CCcEEEEeCCCCC-CcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCC-HHHHHHHHH-c--cccccCCeeEEEee
Q 017897 177 IRRTVYVSDIDQQ-VTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTD-EEGARAALS-L--AGTMLGFYPVRVLP 251 (364)
Q Consensus 177 ~~~~lfV~nLp~~-~te~~L~~~F~~~G~i~~~~i~~d~~~~rG~aFV~F~~-~~~A~~al~-l--~g~~l~g~~i~V~~ 251 (364)
..+.|||+||+.+ +++++|+++|+.||+|..|.+..+.. .|||.|.+ +++|..|++ + .+..|.|..+.+..
T Consensus 17 ~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~----tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~ev 92 (121)
T 1owx_A 17 IGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK----EGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWEV 92 (121)
T ss_dssp CCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS----EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEEE
T ss_pred CCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC----EEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEEE
Confidence 4688999999999 99999999999999999999998875 79999999 899999997 7 47778998888865
Q ss_pred C
Q 017897 252 S 252 (364)
Q Consensus 252 a 252 (364)
.
T Consensus 93 L 93 (121)
T 1owx_A 93 L 93 (121)
T ss_dssp C
T ss_pred C
Confidence 4
No 376
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.89 E-value=5.1e-09 Score=84.03 Aligned_cols=73 Identities=12% Similarity=0.192 Sum_probs=65.0
Q ss_pred ccCceEEEEeCCCCC-CCHHHHHHHhhhcCCceeEEEEeccCCCCeeEEEEEecC-HHHHHHHHh-cC--CCeeCCeeeE
Q 017897 272 EMCSRTIYCTNIDKK-VTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAM-AESAIAALN-CS--GAVLGSLPIR 346 (364)
Q Consensus 272 ~~~~~~l~V~nLp~~-~tee~L~~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~-~e~A~~Al~-ln--g~~~~g~~l~ 346 (364)
...+..|||+||+.. +++++|+++|++| |.|.+|.+.++.. .|||+|.+ .++|..|+. +| +..|.|..++
T Consensus 15 ~~~G~il~v~~l~~~~~sredLke~F~~~-G~V~~Vd~~~g~~----tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~ 89 (121)
T 1owx_A 15 EKIGCLLKFSGDLDDQTCREDLHILFSNH-GEIKWIDFVRGAK----EGIILFKEKAKEALGKAKDANNGNLQLRNKEVT 89 (121)
T ss_dssp CCCCCEEEEEESCCSSCCHHHHHHHTCSS-CCEEEEECCTTCS----EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEE
T ss_pred ccCCeEEEEecCCCCcCCHHHHHHHHHhc-CCEEEEEEecCCC----EEEEEECCChHHHHHHHHHhhcCCcEEeCcEEE
Confidence 456789999999999 9999999999996 9999999998864 69999999 899999999 84 7799998888
Q ss_pred Eee
Q 017897 347 VSP 349 (364)
Q Consensus 347 V~~ 349 (364)
+..
T Consensus 90 ~ev 92 (121)
T 1owx_A 90 WEV 92 (121)
T ss_dssp EEE
T ss_pred EEE
Confidence 765
No 377
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.77 E-value=1.5e-08 Score=76.85 Aligned_cols=69 Identities=23% Similarity=0.259 Sum_probs=60.9
Q ss_pred CcEEEEeCCCCC------CcH---HHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHHccccccCCeeEE
Q 017897 178 RRTVYVSDIDQQ------VTE---EQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALSLAGTMLGFYPVR 248 (364)
Q Consensus 178 ~~~lfV~nLp~~------~te---~~L~~~F~~~G~i~~~~i~~d~~~~rG~aFV~F~~~~~A~~al~l~g~~l~g~~i~ 248 (364)
..||+|.-++.+ ..+ .+|.+.|..||.|..+++..|+ +||+|.+.++|.+||+|+|..+.||.|+
T Consensus 15 D~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~------~fVtF~d~~sAl~AI~ldG~~v~Gr~L~ 88 (95)
T 1ufw_A 15 DATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ------MLVTFADSHSALSVLDVDGMKVKGRAVK 88 (95)
T ss_dssp TCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE------EEEECSCSHHHHHHHHGGGSEETTEEEE
T ss_pred CCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc------EEEEEcChHHHHHHHhcCCeeeCCeEEE
Confidence 589999988743 232 5689999999999999999985 9999999999999999999999999999
Q ss_pred EeeC
Q 017897 249 VLPS 252 (364)
Q Consensus 249 V~~a 252 (364)
|.+.
T Consensus 89 V~~k 92 (95)
T 1ufw_A 89 ISGP 92 (95)
T ss_dssp EECC
T ss_pred Eecc
Confidence 9874
No 378
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.75 E-value=1.7e-08 Score=76.59 Aligned_cols=72 Identities=17% Similarity=0.206 Sum_probs=61.8
Q ss_pred cCceEEEEeCCCCC-----CCH----HHHHHHhhhcCCceeEEEEeccCCCCeeEEEEEecCHHHHHHHHhcCCCeeCCe
Q 017897 273 MCSRTIYCTNIDKK-----VTQ----GDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALNCSGAVLGSL 343 (364)
Q Consensus 273 ~~~~~l~V~nLp~~-----~te----e~L~~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~e~A~~Al~lng~~~~g~ 343 (364)
++..||+|.-++.. +-+ .+|.+.|.+| |.|..++++.+. +||+|.+.++|.+||.|||..++||
T Consensus 13 PpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~-G~Vilvr~v~d~------~fVtF~d~~sAl~AI~ldG~~v~Gr 85 (95)
T 1ufw_A 13 PLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSY-GTIVLVRINQGQ------MLVTFADSHSALSVLDVDGMKVKGR 85 (95)
T ss_dssp CTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHH-SCCSEEEEETTE------EEEECSCSHHHHHHHHGGGSEETTE
T ss_pred CCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHC-CCEEEEEEecCc------EEEEEcChHHHHHHHhcCCeeeCCe
Confidence 45578999888643 333 5689999997 999999999984 9999999999999999999999999
Q ss_pred eeEEeecC
Q 017897 344 PIRVSPSK 351 (364)
Q Consensus 344 ~l~V~~ak 351 (364)
.|+|.+..
T Consensus 86 ~L~V~~k~ 93 (95)
T 1ufw_A 86 AVKISGPS 93 (95)
T ss_dssp EEEEECCC
T ss_pred EEEEeccC
Confidence 99999854
No 379
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.67 E-value=3.3e-08 Score=87.99 Aligned_cols=64 Identities=17% Similarity=0.233 Sum_probs=58.0
Q ss_pred CCHHHHHHHhhhcCCceeEEEEeccC------CCCeeEEEEEecCHHHHHHHHh-cCCCeeCCeeeEEeecC
Q 017897 287 VTQGDIKLFFESVCGEVQRLRLLGDY------QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSPSK 351 (364)
Q Consensus 287 ~tee~L~~~F~~~~G~I~~v~i~~d~------~~~kg~afV~F~~~e~A~~Al~-lng~~~~g~~l~V~~ak 351 (364)
-.+++|++.|++| |.|.++.|+++. ++++|++||+|.+.++|.+|+. |||..++||.|.|.+..
T Consensus 141 e~~~dl~~e~~~~-G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 141 DLEGEVTEECGKF-GAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 211 (222)
T ss_dssp THHHHHHHHHTTT-SCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred HHHHHHHHHHHcc-CCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcC
Confidence 3568999999997 999999998653 3789999999999999999999 99999999999999975
No 380
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.64 E-value=4e-08 Score=87.50 Aligned_cols=65 Identities=18% Similarity=0.150 Sum_probs=57.9
Q ss_pred CCcHHHHHHHhhcCCCeeEEEEecCCC------CCceEEEEEeCCHHHHHHHHH-ccccccCCeeEEEeeCC
Q 017897 189 QVTEEQLATLFLTCGQVVDCRICGDPN------SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSK 253 (364)
Q Consensus 189 ~~te~~L~~~F~~~G~i~~~~i~~d~~------~~rG~aFV~F~~~~~A~~al~-l~g~~l~g~~i~V~~a~ 253 (364)
+-.+++|++.|++||.|.++.|+.+.. .++|++||+|.+.++|.+|++ |+|..+.||.|.+.++.
T Consensus 140 ~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 140 DDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 211 (222)
T ss_dssp TTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred HHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcC
Confidence 345689999999999999999986542 469999999999999999998 99999999999999863
No 381
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.44 E-value=9.2e-07 Score=68.44 Aligned_cols=71 Identities=20% Similarity=0.252 Sum_probs=65.2
Q ss_pred ceEEEEeCCCCCCCHHHHHHHhhhcC-----CceeEEEEeccCCCCeeEEEEEecCHHHHHHHHh-cCCCeeCCeeeEEe
Q 017897 275 SRTIYCTNIDKKVTQGDIKLFFESVC-----GEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVS 348 (364)
Q Consensus 275 ~~~l~V~nLp~~~tee~L~~~F~~~~-----G~I~~v~i~~d~~~~kg~afV~F~~~e~A~~Al~-lng~~~~g~~l~V~ 348 (364)
.++|-+-|||..+++..|+.+.++ + |.|..+.+.+|-+ -|+|+|.+...|-+|.. |+|.+|.|++|++.
T Consensus 21 ~rtiaL~~ipDtvndarIr~lve~-~~~i~~g~i~KI~L~pDH~----GAivef~d~~~AgKasLaL~G~ef~gr~Lr~g 95 (117)
T 2l9w_A 21 ETLICLFPLSDKVSPSLICQFLQE-EIHINEKDIRKILLVSDFN----GAIIIFRDSKFAAKMLMILNGSQFQGKVIRSG 95 (117)
T ss_dssp TSCEEEECCCTTCCHHHHHHHHHH-HTCCCTTTCSEEEEETTTT----EEEEECSCHHHHHHHHHHHSSEEETTEEEEEE
T ss_pred CcEEEEecCCCCCCHHHHHHHHhh-hhccCccceeEEEEecCCC----ceEEEEccchhhHHHHhhcCCeeecCeEEEec
Confidence 479999999999999999999999 6 9999999999864 69999999999999998 99999999999987
Q ss_pred ec
Q 017897 349 PS 350 (364)
Q Consensus 349 ~a 350 (364)
-.
T Consensus 96 Tv 97 (117)
T 2l9w_A 96 TI 97 (117)
T ss_dssp CH
T ss_pred CH
Confidence 43
No 382
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.24 E-value=1e-05 Score=62.03 Aligned_cols=88 Identities=17% Similarity=0.169 Sum_probs=73.2
Q ss_pred CCcEEEEeCCCCCCcHHHHHHHhhc-----CCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHHccccccCCeeEEEee
Q 017897 177 IRRTVYVSDIDQQVTEEQLATLFLT-----CGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLP 251 (364)
Q Consensus 177 ~~~~lfV~nLp~~~te~~L~~~F~~-----~G~i~~~~i~~d~~~~rG~aFV~F~~~~~A~~al~l~g~~l~g~~i~V~~ 251 (364)
..++|.|.|||+.+.++.|.-+|+. =|+|.+++... +-|+|+|.+.+.|++.|+...+.|.+.+|.|.+
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~------~~AvItF~d~~va~rVL~k~~H~L~~~~LsV~P 80 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG------CGGVLTFREPADAERVLAQADHELHGAQLSLRP 80 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET------TEEEEEESSHHHHHHHHTCSCCBSSSSBCEEEE
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC------CcEEEEEcChHHHHHHhcCCcceecCeEEEEEc
Confidence 4678999999999999999999996 25888888765 369999999999999999878899999999987
Q ss_pred CCCCCCCCCCCCCCCCccccccCceEEEEeCCCCCCC
Q 017897 252 SKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVT 288 (364)
Q Consensus 252 a~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t 288 (364)
.- .....+|++++|++.++
T Consensus 81 ~~------------------~~~~~r~ll~gl~~~t~ 99 (104)
T 2dhx_A 81 AP------------------PRAPARLLLQGLPPGTS 99 (104)
T ss_dssp CC------------------CCCCCCCCCCSCCCCCC
T ss_pred CC------------------CCCcceEeeecCCCCCC
Confidence 42 12236888899988764
No 383
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.09 E-value=1.1e-05 Score=62.43 Aligned_cols=74 Identities=15% Similarity=0.156 Sum_probs=66.7
Q ss_pred CCCCCcEEEEeCCCCCCcHHHHHHHhhcC-----CCeeEEEEecCCCCCceEEEEEeCCHHHHHHHH-HccccccCCeeE
Q 017897 174 DEVIRRTVYVSDIDQQVTEEQLATLFLTC-----GQVVDCRICGDPNSVLRFAFVEFTDEEGARAAL-SLAGTMLGFYPV 247 (364)
Q Consensus 174 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~-----G~i~~~~i~~d~~~~rG~aFV~F~~~~~A~~al-~l~g~~l~g~~i 247 (364)
.....++|-+-+||..+++..|+.+.+.+ |.|..+.+..|.+ =|+|+|.+...|-+|. .|+|..|.|++|
T Consensus 17 ~~~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~----GAivef~d~~~AgKasLaL~G~ef~gr~L 92 (117)
T 2l9w_A 17 SKELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFN----GAIIIFRDSKFAAKMLMILNGSQFQGKVI 92 (117)
T ss_dssp TTTTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTT----EEEEECSCHHHHHHHHHHHSSEEETTEEE
T ss_pred CccCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCC----ceEEEEccchhhHHHHhhcCCeeecCeEE
Confidence 34457899999999999999999999999 9999999999874 6999999999999887 699999999999
Q ss_pred EEee
Q 017897 248 RVLP 251 (364)
Q Consensus 248 ~V~~ 251 (364)
++.-
T Consensus 93 r~gT 96 (117)
T 2l9w_A 93 RSGT 96 (117)
T ss_dssp EEEC
T ss_pred EecC
Confidence 9864
No 384
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.72 E-value=0.00024 Score=54.67 Aligned_cols=75 Identities=11% Similarity=0.119 Sum_probs=63.4
Q ss_pred CceEEEEeCCCCCC-CH----HHHHHHhhhcCCceeEEEEeccCCCCeeEEEEEecCHHHHHHHHh-cCCCeeCCeeeEE
Q 017897 274 CSRTIYCTNIDKKV-TQ----GDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRV 347 (364)
Q Consensus 274 ~~~~l~V~nLp~~~-te----e~L~~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~e~A~~Al~-lng~~~~g~~l~V 347 (364)
...+|+|.||+..+ .. +.++++|..| +++......+.-. =..|.|.+.++|.+|-. |++..+.|+.|+|
T Consensus 4 ~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~-~~~~tF~~lkSFR----Rirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~ 78 (104)
T 1wey_A 4 GSSGLIACVANDDVFSESETRAKFESLFRTY-DKDTTFQYFKSFK----RVRINFSNPLSAADARLRLHKTEFLGKEMKL 78 (104)
T ss_dssp CCCEEEEECCCGGGGSTTTHHHHHHHHHHTT-CSSCEEEEETTTT----EEEEECSSTTHHHHHHHTSTTSEETTEECEE
T ss_pred CCceEEEecCCHHHcCCHHHHHHHHHHHHhh-CcCcceeecCcce----EEEEEeCChHHHHHHHHHhccceecCceeEE
Confidence 35789999998865 22 5678999997 9988888887642 36899999999999999 9999999999999
Q ss_pred eecCCC
Q 017897 348 SPSKTP 353 (364)
Q Consensus 348 ~~ak~~ 353 (364)
-++++.
T Consensus 79 YFgq~~ 84 (104)
T 1wey_A 79 YFAQTL 84 (104)
T ss_dssp ECCCCS
T ss_pred EecCCC
Confidence 999854
No 385
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.60 E-value=0.00081 Score=51.52 Aligned_cols=74 Identities=18% Similarity=0.212 Sum_probs=62.4
Q ss_pred CceEEEEeCCCCCCCHHHHHHHhhhc----CCceeEEEEeccCCCCeeEEEEEecCHHHHHHHHhcCCCeeCCeeeEEee
Q 017897 274 CSRTIYCTNIDKKVTQGDIKLFFESV----CGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALNCSGAVLGSLPIRVSP 349 (364)
Q Consensus 274 ~~~~l~V~nLp~~~tee~L~~~F~~~----~G~I~~v~i~~d~~~~kg~afV~F~~~e~A~~Al~lng~~~~g~~l~V~~ 349 (364)
..++|.|.|||+.++++.|.-+|+.- =|.|.++..... -|+|+|.+.+.|.+.|.-..+.|.+.+|.|..
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~~------~AvItF~d~~va~rVL~k~~H~L~~~~LsV~P 80 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLGC------GGVLTFREPADAERVLAQADHELHGAQLSLRP 80 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEETT------EEEEEESSHHHHHHHHTCSCCBSSSSBCEEEE
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcCC------cEEEEEcChHHHHHHhcCCcceecCeEEEEEc
Confidence 45899999999999999999999972 248888888662 69999999999999988557899999999987
Q ss_pred cCCC
Q 017897 350 SKTP 353 (364)
Q Consensus 350 ak~~ 353 (364)
.-+.
T Consensus 81 ~~~~ 84 (104)
T 2dhx_A 81 APPR 84 (104)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 5443
No 386
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.35 E-value=0.0016 Score=50.09 Aligned_cols=73 Identities=12% Similarity=0.063 Sum_probs=62.5
Q ss_pred CCcEEEEeCCCCCC-c----HHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-ccccccCCeeEEEe
Q 017897 177 IRRTVYVSDIDQQV-T----EEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVL 250 (364)
Q Consensus 177 ~~~~lfV~nLp~~~-t----e~~L~~~F~~~G~i~~~~i~~d~~~~rG~aFV~F~~~~~A~~al~-l~g~~l~g~~i~V~ 250 (364)
...+|+|.||+.++ . .+.++++|..|+++......+.-. =..|.|.++++|.+|.. |++..+.|++++|.
T Consensus 4 ~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFR----Rirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~Y 79 (104)
T 1wey_A 4 GSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFK----RVRINFSNPLSAADARLRLHKTEFLGKEMKLY 79 (104)
T ss_dssp CCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTT----EEEEECSSTTHHHHHHHTSTTSEETTEECEEE
T ss_pred CCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcce----EEEEEeCChHHHHHHHHHhccceecCceeEEE
Confidence 46789999999765 2 267899999999999988876543 47899999999999987 99999999999999
Q ss_pred eCC
Q 017897 251 PSK 253 (364)
Q Consensus 251 ~a~ 253 (364)
+++
T Consensus 80 Fgq 82 (104)
T 1wey_A 80 FAQ 82 (104)
T ss_dssp CCC
T ss_pred ecC
Confidence 986
No 387
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.20 E-value=0.0018 Score=51.11 Aligned_cols=71 Identities=20% Similarity=0.240 Sum_probs=59.3
Q ss_pred CCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHHccccccCC-eeEEEeeC
Q 017897 177 IRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALSLAGTMLGF-YPVRVLPS 252 (364)
Q Consensus 177 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~~~~rG~aFV~F~~~~~A~~al~l~g~~l~g-~~i~V~~a 252 (364)
..+-|.|-+.|+.. ...+...|++||.|++..... ...+-.|.|.++.+|++||..||..+.| ..|=|++.
T Consensus 23 ~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~----~~NWihI~Y~s~~~A~rAL~kNG~ii~g~~mIGV~p~ 94 (119)
T 1wwh_A 23 DDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSN----TGNWMHIRYQSKLQARKALSKDGRIFGESIMIGVKPC 94 (119)
T ss_dssp GGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECS----SSSEEEEEESSHHHHHHHHTTTTCEETTTEECEEEEC
T ss_pred CCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCC----CCCeEEEEeCCHHHHHHHHHhCCeEecCCEEEEEEEC
Confidence 45779999999884 678888999999999888622 2249999999999999999999999985 67788774
No 388
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.96 E-value=0.0056 Score=48.31 Aligned_cols=71 Identities=17% Similarity=0.221 Sum_probs=59.2
Q ss_pred CceEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccCCCCeeEEEEEecCHHHHHHHHhcCCCeeCC-eeeEEeec
Q 017897 274 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALNCSGAVLGS-LPIRVSPS 350 (364)
Q Consensus 274 ~~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~e~A~~Al~lng~~~~g-~~l~V~~a 350 (364)
..+-|.|-+.|+.. -..|...|++| |.|.+...... ..|-.|.|.++.+|.+||..||..++| ..|-|.+.
T Consensus 23 ~~~wVtVFGFp~~~-~~~VL~~F~~~-G~Iv~~~~~~~----~NWihI~Y~s~~~A~rAL~kNG~ii~g~~mIGV~p~ 94 (119)
T 1wwh_A 23 DDTWVTVFGFPQAS-ASYILLQFAQY-GNILKHVMSNT----GNWMHIRYQSKLQARKALSKDGRIFGESIMIGVKPC 94 (119)
T ss_dssp GGGEEEEECCCGGG-HHHHHHHHHTT-SCEEEEEECSS----SSEEEEEESSHHHHHHHHTTTTCEETTTEECEEEEC
T ss_pred CCCEEEEECCCHHH-HHHHHHHHHhh-CcEEEeccCCC----CCeEEEEeCCHHHHHHHHHhCCeEecCCEEEEEEEC
Confidence 35789999999885 56788889986 99998887322 349999999999999999999999985 78888874
No 389
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=96.95 E-value=0.0036 Score=47.36 Aligned_cols=57 Identities=19% Similarity=0.255 Sum_probs=47.1
Q ss_pred CCCCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-cc
Q 017897 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LA 238 (364)
Q Consensus 175 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~~~~rG~aFV~F~~~~~A~~al~-l~ 238 (364)
+.....++| +.|+++...||.++|+.||.| .|+.+.|. -|||.|.+++.|..|+. +.
T Consensus 13 p~r~HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidDT-----sAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 13 PKRDHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT-----SAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CCCCSEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEETT-----EEEEECSCHHHHHHHHHHHH
T ss_pred CCCCeEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcCC-----eEEEEecCHHHHHHHHHhcc
Confidence 334456666 999999999999999999954 56777764 69999999999999998 53
No 390
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=96.93 E-value=0.0036 Score=47.17 Aligned_cols=65 Identities=14% Similarity=0.184 Sum_probs=53.5
Q ss_pred cEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCCC----CCceEEEEEeCCHHHHHHHHH-ccccccC
Q 017897 179 RTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN----SVLRFAFVEFTDEEGARAALS-LAGTMLG 243 (364)
Q Consensus 179 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~~----~~rG~aFV~F~~~~~A~~al~-l~g~~l~ 243 (364)
.+|.|+.||+.+|++++.+.++....+.....+..+. ..-.-|||.|.+.+++....+ ++|+.+.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~ 71 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFL 71 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEE
Confidence 4789999999999999999999998877766655432 124579999999999999987 9998864
No 391
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=96.53 E-value=0.011 Score=44.49 Aligned_cols=74 Identities=15% Similarity=0.210 Sum_probs=56.9
Q ss_pred eEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccC---C-CCeeEEEEEecCHHHHHHHHh-cCCCeeCCe-----ee
Q 017897 276 RTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY---Q-HSTRIAFVEFAMAESAIAALN-CSGAVLGSL-----PI 345 (364)
Q Consensus 276 ~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~---~-~~kg~afV~F~~~e~A~~Al~-lng~~~~g~-----~l 345 (364)
..|.|++||+.+||+++.+.+++. ..+......+.+ + ..-.-|+|.|.+.+++..-.. ++|..|-+. +.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~-~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~~~a 80 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPM-PEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYPA 80 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSC-CCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCCEEEC
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCc-ccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCCEeee
Confidence 478999999999999999999996 777766665543 1 233469999999999999888 999977332 34
Q ss_pred EEeec
Q 017897 346 RVSPS 350 (364)
Q Consensus 346 ~V~~a 350 (364)
.|.+|
T Consensus 81 ~VE~A 85 (91)
T 1uw4_A 81 IVEFA 85 (91)
T ss_dssp EEEEC
T ss_pred EEEEc
Confidence 55554
No 392
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=96.18 E-value=0.0058 Score=48.92 Aligned_cols=74 Identities=16% Similarity=0.232 Sum_probs=55.4
Q ss_pred cEEEEeCCCCCCcHHHHHHHhhcCCCeeEE-EEec--------------CCC-CCceEEEEEeCCHHHHHHHHHcccccc
Q 017897 179 RTVYVSDIDQQVTEEQLATLFLTCGQVVDC-RICG--------------DPN-SVLRFAFVEFTDEEGARAALSLAGTML 242 (364)
Q Consensus 179 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~~-~i~~--------------d~~-~~rG~aFV~F~~~~~A~~al~l~g~~l 242 (364)
.-|.|-+.|++. ...+.+.|++||.|++- .+.. -+. +...+-.|+|+++.+|.+||..||..+
T Consensus 8 ~~VtVFGFp~~~-~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~NG~ii 86 (132)
T 3p3d_A 8 LAILVFGYPETM-ANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLENGAVF 86 (132)
T ss_dssp CEEEEECCCGGG-HHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTTTTCEE
T ss_pred eEEEEEecCHHH-HHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHhCCeEe
Confidence 457777886654 45677899999999762 2111 000 124588999999999999999999999
Q ss_pred CCeeEEEeeCC
Q 017897 243 GFYPVRVLPSK 253 (364)
Q Consensus 243 ~g~~i~V~~a~ 253 (364)
.|.-|=|.+.+
T Consensus 87 ~G~mIGV~Py~ 97 (132)
T 3p3d_A 87 NGVLLGVIPYT 97 (132)
T ss_dssp TTEECEEEECC
T ss_pred CcEEEEEEECC
Confidence 99988888864
No 393
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=96.17 E-value=0.014 Score=44.13 Aligned_cols=52 Identities=21% Similarity=0.393 Sum_probs=43.5
Q ss_pred eEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccCCCCeeEEEEEecCHHHHHHHHh-c
Q 017897 276 RTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-C 335 (364)
Q Consensus 276 ~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~e~A~~Al~-l 335 (364)
..++| ++|+.+...||.++|++| |.| .|..+-|. .|||.|.+++.|..|+. +
T Consensus 17 HVf~l-~FP~ewKt~DI~~lFs~f-ggv-~I~WidDT-----sAlvvf~~~~~a~~al~~i 69 (100)
T 1whv_A 17 HVLHV-TFPKEWKTSDLYQLFSAF-GNI-QISWIDDT-----SAFVSLSQPEQVQIAVNTS 69 (100)
T ss_dssp SEEEE-ECCTTCCHHHHHHHHTTT-CSC-CCEEEETT-----EEEEECSCHHHHHHHHHHH
T ss_pred eEEEE-eCChhhhhHHHHHHhhcc-CCE-EEEEEcCC-----eEEEEecCHHHHHHHHHhc
Confidence 45666 999999999999999997 844 45555554 79999999999999998 5
No 394
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.07 E-value=0.0079 Score=45.67 Aligned_cols=52 Identities=21% Similarity=0.296 Sum_probs=44.8
Q ss_pred EEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-cc
Q 017897 180 TVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LA 238 (364)
Q Consensus 180 ~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~~~~rG~aFV~F~~~~~A~~al~-l~ 238 (364)
.++| +.|+++...||.++|+.|| -..|+.+.|. -|||.|.+++.|..|+. +.
T Consensus 8 V~~l-~FP~ewKt~Di~~lFs~fg-gv~I~WidDT-----sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 8 VLHV-TFPKEWKTSDLYQLFSAFG-NIQISWIDDT-----SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEE-ECCTTCCHHHHHHHTTTSE-EEEEEEEETT-----EEEEEEEEECHHHHHHHHHT
T ss_pred EEEE-eCChhhhhHHHHHHHhccC-CEEEEEEcCC-----eEEEEecCHHHHHHHHHhcc
Confidence 4555 9999999999999999999 4567777774 69999999999999998 54
No 395
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=95.84 E-value=0.013 Score=46.82 Aligned_cols=74 Identities=18% Similarity=0.242 Sum_probs=56.0
Q ss_pred eEEEEeCCCCCCCHHHHHHHhhhcCCceeEE-EEec--------------cCC-CCeeEEEEEecCHHHHHHHHhcCCCe
Q 017897 276 RTIYCTNIDKKVTQGDIKLFFESVCGEVQRL-RLLG--------------DYQ-HSTRIAFVEFAMAESAIAALNCSGAV 339 (364)
Q Consensus 276 ~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v-~i~~--------------d~~-~~kg~afV~F~~~e~A~~Al~lng~~ 339 (364)
.-|.|-+.|+.. ...+.+.|++| |.|..- ...+ -+. ....|-.|+|.++.+|.+||.-||..
T Consensus 8 ~~VtVFGFp~~~-~~~VI~~Fs~~-G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~NG~i 85 (132)
T 3p3d_A 8 LAILVFGYPETM-ANQVIAYFQEF-GTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLENGAV 85 (132)
T ss_dssp CEEEEECCCGGG-HHHHHHHHGGG-SCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTTTTCE
T ss_pred eEEEEEecCHHH-HHHHHHHHHhh-ceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHhCCeE
Confidence 467778887765 55778889997 998762 1111 000 12459999999999999999999999
Q ss_pred eCCeeeEEeecC
Q 017897 340 LGSLPIRVSPSK 351 (364)
Q Consensus 340 ~~g~~l~V~~ak 351 (364)
|+|..|-|.+.+
T Consensus 86 i~G~mIGV~Py~ 97 (132)
T 3p3d_A 86 FNGVLLGVIPYT 97 (132)
T ss_dssp ETTEECEEEECC
T ss_pred eCcEEEEEEECC
Confidence 999999998864
No 396
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=95.83 E-value=0.013 Score=44.54 Aligned_cols=52 Identities=21% Similarity=0.356 Sum_probs=43.1
Q ss_pred EEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccCCCCeeEEEEEecCHHHHHHHHh-cC
Q 017897 277 TIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CS 336 (364)
Q Consensus 277 ~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~e~A~~Al~-ln 336 (364)
.++| ++|+++...||.++|++| |. ..|..+-|. .|||.|.+++.|..|+. +.
T Consensus 8 V~~l-~FP~ewKt~Di~~lFs~f-gg-v~I~WidDT-----sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 8 VLHV-TFPKEWKTSDLYQLFSAF-GN-IQISWIDDT-----SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEE-ECCTTCCHHHHHHHTTTS-EE-EEEEEEETT-----EEEEEEEEECHHHHHHHHHT
T ss_pred EEEE-eCChhhhhHHHHHHHhcc-CC-EEEEEEcCC-----eEEEEecCHHHHHHHHHhcc
Confidence 4555 999999999999999997 83 446665554 79999999999999998 64
No 397
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.67 E-value=0.0065 Score=59.37 Aligned_cols=64 Identities=19% Similarity=0.246 Sum_probs=47.8
Q ss_pred CCCCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHHcccccc
Q 017897 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALSLAGTML 242 (364)
Q Consensus 175 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~~~~rG~aFV~F~~~~~A~~al~l~g~~l 242 (364)
....++|||. .|..+++.+|.++|++||.|.++.+..+.+ -||.|+|.+.+++..++...+...
T Consensus 50 ~qa~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~g---~~~~vef~~~~~~~~~~~~~~~p~ 113 (464)
T 3pq1_A 50 EQAQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESFG---LYAVVEFCQKESIGSLQNGTHTPX 113 (464)
T ss_dssp HHHHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSSS---EEEEEECC---CCHHHHSSCCCCC
T ss_pred HHhcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccCC---eEEEEEeCCHHHHHHHHhccCCCc
Confidence 3346889998 699999999999999999999998887665 599999999999998886433333
No 398
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=94.83 E-value=0.018 Score=56.28 Aligned_cols=59 Identities=20% Similarity=0.287 Sum_probs=45.7
Q ss_pred ccCceEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccCCCCeeEEEEEecCHHHHHHHHhc
Q 017897 272 EMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALNC 335 (364)
Q Consensus 272 ~~~~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~e~A~~Al~l 335 (364)
....++|+|. .|..+++.+|.++|++| |.|.++.+..+.| -||.|+|.+.+++.+++..
T Consensus 50 ~qa~rsv~v~-~~~~~~~~~l~~y~~~~-g~i~~~~~~~~~g---~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 50 EQAQRTVLIH-CPEKISENKFLKYLSQF-GPINNHFFYESFG---LYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp HHHHTEEEEE-ECCC---CHHHHHHGGG-SCCCCEEEECSSS---EEEEEECC---CCHHHHSS
T ss_pred HHhcceEEEE-cCCCCCHHHHHHHHHhc-CCcceEEEEccCC---eEEEEEeCCHHHHHHHHhc
Confidence 4456899998 68899999999999997 9999999988754 6999999999999988763
No 399
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=94.73 E-value=0.028 Score=42.59 Aligned_cols=66 Identities=14% Similarity=0.136 Sum_probs=48.1
Q ss_pred CcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCC----CceEEEEEeCCHHHHHHHHH-ccccccC
Q 017897 178 RRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS----VLRFAFVEFTDEEGARAALS-LAGTMLG 243 (364)
Q Consensus 178 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~~~----~rG~aFV~F~~~~~A~~al~-l~g~~l~ 243 (364)
.-+|.|+.||+.+|++++.+.++..-.+.....+..+.+ .-.-|||.|.+.+++....+ ++|+.+.
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~ 79 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFL 79 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEE
Confidence 457999999999999999888886655433222221111 12469999999999999997 9998763
No 400
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=93.24 E-value=0.07 Score=40.41 Aligned_cols=74 Identities=9% Similarity=0.156 Sum_probs=51.6
Q ss_pred eEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccC---C-CCeeEEEEEecCHHHHHHHHh-cCCCeeCCe-----ee
Q 017897 276 RTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY---Q-HSTRIAFVEFAMAESAIAALN-CSGAVLGSL-----PI 345 (364)
Q Consensus 276 ~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~---~-~~kg~afV~F~~~e~A~~Al~-lng~~~~g~-----~l 345 (364)
-.|.|+.||+.+||+++.+.+++. -.+........+ + ..-.-|+|.|.+.++...-.. .+|..|-+. +.
T Consensus 10 ~KvVIRrLPP~Ltee~F~~~l~~~-~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~a 88 (97)
T 2l08_A 10 HMVVIRRLPPGLTKEQLEEQLRPL-PAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYPA 88 (97)
T ss_dssp CCEEEECCCSCSCHHHHTTTTSCC-SSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEEE
T ss_pred eeEEEeCCCCCCCHHHHHHHhCCc-CccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEeee
Confidence 578999999999999999888875 344332222222 1 112258999999999999888 999877332 44
Q ss_pred EEeec
Q 017897 346 RVSPS 350 (364)
Q Consensus 346 ~V~~a 350 (364)
.|++|
T Consensus 89 ~VE~A 93 (97)
T 2l08_A 89 VVEFA 93 (97)
T ss_dssp EEEEC
T ss_pred EEEec
Confidence 45554
No 401
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=86.41 E-value=1.8 Score=42.66 Aligned_cols=57 Identities=19% Similarity=0.243 Sum_probs=46.1
Q ss_pred CCCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-ccc
Q 017897 176 VIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAG 239 (364)
Q Consensus 176 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~~~~rG~aFV~F~~~~~A~~al~-l~g 239 (364)
.....++|+ +|+.+...+|.++|+.||.+ +|+.+.|. .|||.|.+.+.|..+++ +..
T Consensus 438 ~R~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widdt-----~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 438 KRDHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDDT-----SAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp CGGGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSSS-----EEEEECSCHHHHHHHHHHHTT
T ss_pred CcCcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcCC-----eEEEEECCHHHHHHHHHHHHh
Confidence 344567776 99999999999999999954 66666653 79999999999999997 643
No 402
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=77.25 E-value=6.8 Score=38.59 Aligned_cols=54 Identities=22% Similarity=0.394 Sum_probs=43.0
Q ss_pred ceEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccCCCCeeEEEEEecCHHHHHHHHh-cC
Q 017897 275 SRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CS 336 (364)
Q Consensus 275 ~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~e~A~~Al~-ln 336 (364)
...++|+ +|..+...+|.++|+.| |.+ +|..+-+. .|||.|.+++.|..++. ++
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~f-g~v-~V~widdt-----~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAF-GNI-QISWIDDT-----SAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGG-CCC-EEEECSSS-----EEEEECSCHHHHHHHHHHHT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhc-CCE-EEEEEcCC-----eEEEEECCHHHHHHHHHHHH
Confidence 3466666 99999999999999997 853 55554443 79999999999999998 64
No 403
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=44.00 E-value=38 Score=28.06 Aligned_cols=60 Identities=17% Similarity=0.109 Sum_probs=40.0
Q ss_pred cEEEEeCCCCC---------CcHHHHHHHh--hcCCCeeEEEEecCCCCCceEEEEEeCCH-HHHHHHHHccc
Q 017897 179 RTVYVSDIDQQ---------VTEEQLATLF--LTCGQVVDCRICGDPNSVLRFAFVEFTDE-EGARAALSLAG 239 (364)
Q Consensus 179 ~~lfV~nLp~~---------~te~~L~~~F--~~~G~i~~~~i~~d~~~~rG~aFV~F~~~-~~A~~al~l~g 239 (364)
-++.|-|+|.. .+..+|++.| +.|.++. ++.+..+..++|++.|.|.+. ..-..|+.|..
T Consensus 13 wmgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~~Gh~g~aIv~F~~dw~Gf~~A~~fek 84 (172)
T 4e8u_A 13 WKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNYLGHSGTAIVEFNKDWNGLHNGLLFDK 84 (172)
T ss_dssp CEEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECSSBEEEEEEEECCSSHHHHHHHHHHHH
T ss_pred CEEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccCCCCceeEEEEecCChHHHHHHHHHHH
Confidence 35667777751 4457899977 9999876 455555555789999999763 33445655433
No 404
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=33.06 E-value=79 Score=26.13 Aligned_cols=48 Identities=23% Similarity=0.266 Sum_probs=33.7
Q ss_pred eEEEEeCCCC-C--------CCHHHHHHHh--hhcCCceeEEEEeccCCCCeeEEEEEecC
Q 017897 276 RTIYCTNIDK-K--------VTQGDIKLFF--ESVCGEVQRLRLLGDYQHSTRIAFVEFAM 325 (364)
Q Consensus 276 ~~l~V~nLp~-~--------~tee~L~~~F--~~~~G~I~~v~i~~d~~~~kg~afV~F~~ 325 (364)
-...|-|+|. . .+..+|++.| ..| ..+ .|+.+.++..++|++.|.|.+
T Consensus 13 wmgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F-~p~-kv~~l~~~~Gh~g~aIv~F~~ 71 (172)
T 4e8u_A 13 WKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGF-NPT-RVRPLWNYLGHSGTAIVEFNK 71 (172)
T ss_dssp CEEEEECCCCEECTTSCEECCCSHHHHHHHHHTTC-CCS-EEEEEECSSBEEEEEEEECCS
T ss_pred CEEEEEeccccccCCCCccCCCHHHHHHHHHhcCC-CCc-eeEecccCCCCceeEEEEecC
Confidence 3566777775 1 3457899977 887 554 465556655588999999987
No 405
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=31.07 E-value=38 Score=23.43 Aligned_cols=59 Identities=12% Similarity=0.238 Sum_probs=36.5
Q ss_pred CCCHHHHHHHhhhcCC----ceeEEEEeccCCCCeeEEEEEecCHHHHHHHHh-cCCCeeCCeeeEEeecC
Q 017897 286 KVTQGDIKLFFESVCG----EVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSPSK 351 (364)
Q Consensus 286 ~~tee~L~~~F~~~~G----~I~~v~i~~d~~~~kg~afV~F~~~e~A~~Al~-lng~~~~g~~l~V~~ak 351 (364)
.+...+|..++..-.| .|=.+.+..+ |.||+-.. +.|..++. |++..+.|+.+.|..++
T Consensus 12 ~~~p~~ivg~i~~~~gi~~~~IG~I~i~d~------~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 12 KIRAVDFVGTIAKIDGVSADDIGIITIMDN------ASYVEILN-GKGPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp ---CHHHHHHHHTSTTCCGGGEEEEEECSS------CEEEEECT-TCHHHHHHHHTTCCC---CCCEEECC
T ss_pred CCCHHHHHHHHHHccCCChhhccEEEEeCC------cEEEEECH-HHHHHHHHHhccccCcCceEEEEECC
Confidence 4566677777765412 3456666443 78998876 45666777 88999999999998764
No 406
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=23.86 E-value=2.1e+02 Score=20.80 Aligned_cols=54 Identities=15% Similarity=0.219 Sum_probs=44.5
Q ss_pred CCcEEEEeCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH
Q 017897 177 IRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS 236 (364)
Q Consensus 177 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~i~~d~~~~rG~aFV~F~~~~~A~~al~ 236 (364)
..+-|-|-|+|..+-..++.-.....|---.|..+. |-|.|.|.+.++-..|+.
T Consensus 11 qnclikiinipqgtlkaevvlavrhlgyefycdyid------gqamirfqnsdeqrlaiq 64 (129)
T 4eyt_A 11 QNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYID------GQAMIRFQNSDEQRLAIQ 64 (129)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEECS------SCEEEEESSHHHHHHHHH
T ss_pred hCcEEEEEecCCCceeeeeEEeehhcCeeEeeeeec------CeeEEEecCChHHHHHHH
Confidence 457788999999999988888888888666665543 689999999999999996
No 407
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=22.78 E-value=2.2e+02 Score=20.67 Aligned_cols=66 Identities=14% Similarity=0.118 Sum_probs=48.3
Q ss_pred ceEEEEeCCCCCCCHHHHHHHhhhcCCceeEEEEeccCCCCeeEEEEEecCHHHHHHHHh--cCC------CeeCCeeeE
Q 017897 275 SRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN--CSG------AVLGSLPIR 346 (364)
Q Consensus 275 ~~~l~V~nLp~~~tee~L~~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~e~A~~Al~--lng------~~~~g~~l~ 346 (364)
.+.|-|-|+|..+-..++--...-. |---.|..+- |.|++.|.+.++..-|+. ||. .++.|....
T Consensus 12 nclikiinipqgtlkaevvlavrhl-gyefycdyid------gqamirfqnsdeqrlaiqkllnhnnnklqieirgqicd 84 (129)
T 4eyt_A 12 NCLIKIINIPQGTLKAEVVLAVRHL-GYEFYCDYID------GQAMIRFQNSDEQRLAIQKLLNHNNNKLQIEIRGQICD 84 (129)
T ss_dssp SCEEEEECCCTTCCHHHHHHHHHTT-CCCEEEEECS------SCEEEEESSHHHHHHHHHHHEETTTTEEEEEETTEEEE
T ss_pred CcEEEEEecCCCceeeeeEEeehhc-CeeEeeeeec------CeeEEEecCChHHHHHHHHHHhcCCCEEEEEEcceeee
Confidence 4778899999999888877666654 7666776644 369999999999999987 432 245565544
Q ss_pred E
Q 017897 347 V 347 (364)
Q Consensus 347 V 347 (364)
|
T Consensus 85 v 85 (129)
T 4eyt_A 85 V 85 (129)
T ss_dssp E
T ss_pred e
Confidence 4
No 408
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=22.58 E-value=2.1e+02 Score=20.65 Aligned_cols=50 Identities=24% Similarity=0.319 Sum_probs=36.6
Q ss_pred CCCCCCHHHHHHHhhhcCC-ceeEEEEeccCCCCeeEEEEEecCHHHHHHHH
Q 017897 283 IDKKVTQGDIKLFFESVCG-EVQRLRLLGDYQHSTRIAFVEFAMAESAIAAL 333 (364)
Q Consensus 283 Lp~~~tee~L~~~F~~~~G-~I~~v~i~~d~~~~kg~afV~F~~~e~A~~Al 333 (364)
.+...+..+|++.+++.|| .|..|..+..+... --|+|++..-.+|....
T Consensus 30 Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~~~~-KKA~V~L~~~~~a~dva 80 (86)
T 3j21_T 30 VDRRATKQDIKRAVEEIFNVKVEKVNTLITPRGE-KKAYVKLKPEYSASEVA 80 (86)
T ss_dssp ECTTCCHHHHHHHHHHHTTCCEEEEEEEECTTSC-EEEEEEECTTSCHHHHH
T ss_pred EcCCCCHHHHHHHHHHHcCCCceEEEEeEcCCCc-eEEEEEcCCCCcHHHHH
Confidence 5778899999999999878 78888766543212 25999998877666543
Done!