BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017898
(364 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3SE0|A Chain A, Structural Characterization Of The Subunit A Mutant F508w
Of The A-Atp Synthase From Pyrococcus Horikoshii
Length = 588
Score = 32.0 bits (71), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
Query: 152 VLISSLILPQMFLGNVIEDFIK-DNLLMEIVSSLTFESMFYVGLAIFLRITDRVQRPYLQ 210
+++ +++P G ++E + D + E+++ + S L ++ R RV+RPY +
Sbjct: 144 IIVHKIMVPPGIEGEIVEIAEEGDYTIEEVIAKVKTPSGEIKELKMYQRWPVRVKRPYKE 203
Query: 211 FSPKRWGLITGLRGYLTSAFF 231
P LITG R + FF
Sbjct: 204 KLPPEVPLITGQR--VIDTFF 222
>pdb|3SDZ|A Chain A, Structural Characterization Of The Subunit A Mutant F427w
Of The A-Atp Synthase From Pyrococcus Horikoshii
Length = 588
Score = 32.0 bits (71), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
Query: 152 VLISSLILPQMFLGNVIEDFIK-DNLLMEIVSSLTFESMFYVGLAIFLRITDRVQRPYLQ 210
+++ +++P G ++E + D + E+++ + S L ++ R RV+RPY +
Sbjct: 144 IIVHKIMVPPGIEGEIVEIAEEGDYTIEEVIAKVKTPSGEIKELKMYQRWPVRVKRPYKE 203
Query: 211 FSPKRWGLITGLRGYLTSAFF 231
P LITG R + FF
Sbjct: 204 KLPPEVPLITGQR--VIDTFF 222
>pdb|3QJY|A Chain A, Crystal Structure Of P-Loop G234a Mutant Of Subunit A Of
The A1ao Atp Synthase
Length = 588
Score = 32.0 bits (71), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
Query: 152 VLISSLILPQMFLGNVIEDFIK-DNLLMEIVSSLTFESMFYVGLAIFLRITDRVQRPYLQ 210
+++ +++P G ++E + D + E+++ + S L ++ R RV+RPY +
Sbjct: 144 IIVHKIMVPPGIEGEIVEIAEEGDYTIEEVIAKVKTPSGEIKELKMYQRWPVRVKRPYKE 203
Query: 211 FSPKRWGLITGLRGYLTSAFF 231
P LITG R + FF
Sbjct: 204 KLPPEVPLITGQR--VIDTFF 222
>pdb|3QIA|A Chain A, Crystal Structure Of P-Loop G237a Mutant Of Subunit A Of
The A1ao Atp Synthase
Length = 588
Score = 32.0 bits (71), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
Query: 152 VLISSLILPQMFLGNVIEDFIK-DNLLMEIVSSLTFESMFYVGLAIFLRITDRVQRPYLQ 210
+++ +++P G ++E + D + E+++ + S L ++ R RV+RPY +
Sbjct: 144 IIVHKIMVPPGIEGEIVEIAEEGDYTIEEVIAKVKTPSGEIKELKMYQRWPVRVKRPYKE 203
Query: 211 FSPKRWGLITGLRGYLTSAFF 231
P LITG R + FF
Sbjct: 204 KLPPEVPLITGQR--VIDTFF 222
>pdb|1VDZ|A Chain A, Crystal Structure Of A-Type Atpase Catalytic Subunit A
From Pyrococcus Horikoshii Ot3
Length = 588
Score = 31.6 bits (70), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
Query: 152 VLISSLILPQMFLGNVIEDFIK-DNLLMEIVSSLTFESMFYVGLAIFLRITDRVQRPYLQ 210
+++ +++P G ++E + D + E+++ + S L ++ R RV+RPY +
Sbjct: 144 IIVHKIMVPPGIEGEIVEIAEEGDYTIEEVIAKVKTPSGEIKELKMYQRWPVRVKRPYKE 203
Query: 211 FSPKRWGLITGLRGYLTSAFF 231
P LITG R + FF
Sbjct: 204 KLPPEVPLITGQR--VIDTFF 222
>pdb|3MFY|A Chain A, Structural Characterization Of The Subunit A Mutant F236a
Of The A-Atp Synthase From Pyrococcus Horikoshii
Length = 588
Score = 31.6 bits (70), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
Query: 152 VLISSLILPQMFLGNVIEDFIK-DNLLMEIVSSLTFESMFYVGLAIFLRITDRVQRPYLQ 210
+++ +++P G ++E + D + E+++ + S L ++ R RV+RPY +
Sbjct: 144 IIVHKIMVPPGIEGEIVEIAEEGDYTIEEVIAKVKTPSGEIKELKMYQRWPVRVKRPYKE 203
Query: 211 FSPKRWGLITGLRGYLTSAFF 231
P LITG R + FF
Sbjct: 204 KLPPEVPLITGQR--VIDTFF 222
>pdb|3QG1|A Chain A, Crystal Structure Of P-Loop G239a Mutant Of Subunit A Of
The A1ao Atp Synthase
Length = 588
Score = 31.6 bits (70), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
Query: 152 VLISSLILPQMFLGNVIEDFIK-DNLLMEIVSSLTFESMFYVGLAIFLRITDRVQRPYLQ 210
+++ +++P G ++E + D + E+++ + S L ++ R RV+RPY +
Sbjct: 144 IIVHKIMVPPGIEGEIVEIAEEGDYTIEEVIAKVKTPSGEIKELKMYQRWPVRVKRPYKE 203
Query: 211 FSPKRWGLITGLRGYLTSAFF 231
P LITG R + FF
Sbjct: 204 KLPPEVPLITGQR--VIDTFF 222
>pdb|3ND9|A Chain A, Structural Characterization For The Nucleotide Binding
Ability Of Subunit A Of The A1ao Atp Synthase
Length = 588
Score = 31.6 bits (70), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
Query: 152 VLISSLILPQMFLGNVIEDFIK-DNLLMEIVSSLTFESMFYVGLAIFLRITDRVQRPYLQ 210
+++ +++P G ++E + D + E+++ + S L ++ R RV+RPY +
Sbjct: 144 IIVHKIMVPPGIEGEIVEIAEEGDYTIEEVIAKVKTPSGEIKELKMYQRWPVRVKRPYKE 203
Query: 211 FSPKRWGLITGLRGYLTSAFF 231
P LITG R + FF
Sbjct: 204 KLPPEVPLITGQR--VIDTFF 222
>pdb|3ND8|A Chain A, Structural Characterization For The Nucleotide Binding
Ability Of Subunit A Of The A1ao Atp Synthase
Length = 588
Score = 31.6 bits (70), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
Query: 152 VLISSLILPQMFLGNVIEDFIK-DNLLMEIVSSLTFESMFYVGLAIFLRITDRVQRPYLQ 210
+++ +++P G ++E + D + E+++ + S L ++ R RV+RPY +
Sbjct: 144 IIVHKIMVPPGIEGEIVEIAEEGDYTIEEVIAKVKTPSGEIKELKMYQRWPVRVKRPYKE 203
Query: 211 FSPKRWGLITGLRGYLTSAFF 231
P LITG R + FF
Sbjct: 204 KLPPEVPLITGQR--VIDTFF 222
>pdb|3M4Y|A Chain A, Structural Characterization Of The Subunit A Mutant P235a
Of The A-Atp Synthase
Length = 588
Score = 31.6 bits (70), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
Query: 152 VLISSLILPQMFLGNVIEDFIK-DNLLMEIVSSLTFESMFYVGLAIFLRITDRVQRPYLQ 210
+++ +++P G ++E + D + E+++ + S L ++ R RV+RPY +
Sbjct: 144 IIVHKIMVPPGIEGEIVEIAEEGDYTIEEVIAKVKTPSGEIKELKMYQRWPVRVKRPYKE 203
Query: 211 FSPKRWGLITGLRGYLTSAFF 231
P LITG R + FF
Sbjct: 204 KLPPEVPLITGQR--VIDTFF 222
>pdb|3I4L|A Chain A, Structural Characterization For The Nucleotide Binding
Ability Of Subunit A With Amp-Pnp Of The A1ao Atp
Synthase
pdb|3I72|A Chain A, Structural Characterization For The Nucleotide Binding
Ability Of Subunit A With So4 Of The A1ao Atp Synthase
pdb|3I73|A Chain A, Structural Characterization For The Nucleotide Binding
Ability Of Subunit A With Adp Of The A1ao Atp Synthase
pdb|3P20|A Chain A, Crystal Structure Of Vanadate Bound Subunit A Of The A1ao
Atp Synthase
Length = 588
Score = 31.6 bits (70), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
Query: 152 VLISSLILPQMFLGNVIEDFIK-DNLLMEIVSSLTFESMFYVGLAIFLRITDRVQRPYLQ 210
+++ +++P G ++E + D + E+++ + S L ++ R RV+RPY +
Sbjct: 144 IIVHKIMVPPGIEGEIVEIAEEGDYTIEEVIAKVKTPSGEIKELKMYQRWPVRVKRPYKE 203
Query: 211 FSPKRWGLITGLRGYLTSAFF 231
P LITG R + FF
Sbjct: 204 KLPPEVPLITGQR--VIDTFF 222
>pdb|3IKJ|A Chain A, Structural Characterization For The Nucleotide Binding
Ability Of Subunit A Mutant S238a Of The A1ao Atp
Synthase
Length = 588
Score = 31.6 bits (70), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
Query: 152 VLISSLILPQMFLGNVIEDFIK-DNLLMEIVSSLTFESMFYVGLAIFLRITDRVQRPYLQ 210
+++ +++P G ++E + D + E+++ + S L ++ R RV+RPY +
Sbjct: 144 IIVHKIMVPPGIEGEIVEIAEEGDYTIEEVIAKVKTPSGEIKELKMYQRWPVRVKRPYKE 203
Query: 211 FSPKRWGLITGLRGYLTSAFF 231
P LITG R + FF
Sbjct: 204 KLPPEVPLITGQR--VIDTFF 222
>pdb|2B5O|A Chain A, Ferredoxin-nadp Reductase
pdb|2B5O|B Chain B, Ferredoxin-nadp Reductase
Length = 402
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 6/46 (13%)
Query: 85 SDTKLGFPSGENSSLPVAIFNGPEPFRGKSGSVSFCGLTHQLVEEG 130
S TK+ P ++S+PV I+ PF GK C ++LV+EG
Sbjct: 98 SSTKIVHPKTTDTSVPVNIYRPKTPFLGK------CIENYELVDEG 137
>pdb|2JIO|A Chain A, A New Catalytic Mechanism Of Periplasmic Nitrate Reductase
From Desulfovibrio Desulfuricans Atcc 27774 From
Crystallographic And Epr Data And Based On Detailed
Analysis Of The Sixth Ligand
pdb|2JIQ|A Chain A, A New Catalytic Mechanism Of Periplasmic Nitrate Reductase
From Desulfovibrio Desulfuricans Atcc 27774 From
Crystallographic And Epr Data And Based On Detailed
Analysis Of The Sixth Ligand
pdb|2V3V|A Chain A, A New Catalytic Mechanism Of Periplasmic Nitrate Reductase
From Desulfovibrio Desulfuricans Atcc 27774 From
Crystallographic And Epr Data And Based On Detailed
Analysis Of The Sixth Ligand
Length = 723
Score = 28.5 bits (62), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 24/65 (36%), Gaps = 8/65 (12%)
Query: 21 NCGFLSHQFVSPSASQFGSRSQ-----SIRFGNAYKFL---GNTFPNLKHKIEGYSAWSS 72
N ++ Q P A+ F Q +R G A L G PN KH+ E W
Sbjct: 325 NLHLITGQICRPGATSFSLTGQPNACGGVRDGGALSHLLPAGRAIPNAKHRAEMEKLWGL 384
Query: 73 KRGAI 77
G I
Sbjct: 385 PEGRI 389
>pdb|2NAP|A Chain A, Dissimilatory Nitrate Reductase (Nap) From Desulfovibrio
Desulfuricans
pdb|2JIM|A Chain A, A New Catalytic Mechanism Of Periplasmic Nitrate Reductase
From Desulfovibrio Desulfuricans Atcc 27774 From
Crystallographic And Epr Data And Based On Detailed
Analysis Of The Sixth Ligand
pdb|2JIP|A Chain A, A New Catalytic Mechanism Of Periplasmic Nitrate Reductase
From Desulfovibrio Desulfuricans Atcc 27774 From
Crystallographic And Epr Data And Based On Detailed
Analysis Of The Sixth Ligand
pdb|2JIR|A Chain A, A New Catalytic Mechanism Of Periplasmic Nitrate Reductase
From Desulfovibrio Desulfuricans Atcc 27774 From
Crystallographic And Epr Data And Based On Detailed
Analysis Of The Sixth Ligand
pdb|2V45|A Chain A, A New Catalytic Mechanism Of Periplasmic Nitrate Reductase
From Desulfovibrio Desulfuricans Atcc 27774 From
Crystallographic And Epr Data And Based On Detailed
Analysis Of The Sixth Ligand
Length = 723
Score = 28.1 bits (61), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 24/65 (36%), Gaps = 8/65 (12%)
Query: 21 NCGFLSHQFVSPSASQFGSRSQ-----SIRFGNAYKFL---GNTFPNLKHKIEGYSAWSS 72
N ++ Q P A+ F Q +R G A L G PN KH+ E W
Sbjct: 325 NLHLITGQICRPGATSFSLTGQPNACGGVRDGGALSHLLPAGRAIPNAKHRAEMEKLWGL 384
Query: 73 KRGAI 77
G I
Sbjct: 385 PEGRI 389
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.138 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,357,045
Number of Sequences: 62578
Number of extensions: 365486
Number of successful extensions: 770
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 767
Number of HSP's gapped (non-prelim): 19
length of query: 364
length of database: 14,973,337
effective HSP length: 100
effective length of query: 264
effective length of database: 8,715,537
effective search space: 2300901768
effective search space used: 2300901768
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 52 (24.6 bits)