Query 017898
Match_columns 364
No_of_seqs 31 out of 33
Neff 2.8
Searched_HMMs 46136
Date Fri Mar 29 04:23:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017898.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017898hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF15348 GEMIN8: Gemini of Caj 53.3 9 0.0002 36.3 2.0 25 266-290 184-208 (209)
2 PRK07668 hypothetical protein; 47.3 1.4E+02 0.003 29.3 9.0 62 139-203 102-164 (254)
3 PF06112 Herpes_capsid: Gammah 20.3 64 0.0014 29.7 1.7 39 240-278 23-64 (147)
4 PF07136 DUF1385: Protein of u 19.6 2.1E+02 0.0046 27.9 5.1 31 250-284 167-197 (236)
5 cd02796 tRNA_bind_bactPheRS tR 18.8 1.4E+02 0.0031 24.1 3.3 59 61-119 31-93 (103)
6 PRK09459 pspG phage shock prot 18.3 5.3E+02 0.011 21.6 6.4 17 186-202 2-18 (76)
7 COG0387 ChaA Ca2+/H+ antiporte 18.3 1.1E+03 0.024 24.7 10.1 151 187-346 108-313 (368)
8 PF06712 DUF1199: Protein of u 16.4 45 0.00097 25.8 -0.1 48 93-149 3-50 (52)
9 TIGR01842 type_I_sec_PrtD type 14.7 7.8E+02 0.017 25.3 8.1 18 157-174 22-39 (544)
10 COG5617 Predicted integral mem 14.3 1.4E+03 0.03 26.5 10.3 171 142-351 64-237 (801)
No 1
>PF15348 GEMIN8: Gemini of Cajal bodies-associated protein 8
Probab=53.28 E-value=9 Score=36.29 Aligned_cols=25 Identities=36% Similarity=0.853 Sum_probs=22.8
Q ss_pred HHHHHHHHHHhhhcCCCCcccccee
Q 017898 266 CAAQLAFETNLDKRGSSCWPLIPII 290 (364)
Q Consensus 266 l~VQ~afE~l~~~~kSP~WplvPiI 290 (364)
-.+|+.|++..+..+..-||+||+=
T Consensus 184 aalql~fd~~~D~~~P~~WP~IPLk 208 (209)
T PF15348_consen 184 AALQLSFDKHCDRKQPKYWPVIPLK 208 (209)
T ss_pred HHHHHHHHhhhcccCCCCCCCCCCC
Confidence 4689999999999999999999973
No 2
>PRK07668 hypothetical protein; Validated
Probab=47.27 E-value=1.4e+02 Score=29.28 Aligned_cols=62 Identities=15% Similarity=0.150 Sum_probs=40.9
Q ss_pred cCCCceEeehh-hHHHHhhcccccccchHHHHHHhccchHHHHHHHhhhhHHHHHHHHHHHHHhhc
Q 017898 139 EDKGSFLWILA-PVVLISSLILPQMFLGNVIEDFIKDNLLMEIVSSLTFESMFYVGLAIFLRITDR 203 (364)
Q Consensus 139 ~~~~s~LWLLG-P~VLvAS~i~P~l~Lp~vissif~ds~lt~~LsLf~~EalFy~G~alFLlmaD~ 203 (364)
+-+.+..=++| |.+++...++|-+.+++. .|++..--.--+.+++=.+.-+++.++..+.|+
T Consensus 102 ~~~~s~~~iig~~~~~~l~i~~~~~~~r~~---~fk~~~~~~~~i~~~~~~~~p~~l~i~i~~l~k 164 (254)
T PRK07668 102 PLTYSLIQLIGYPISLILTIIGLIFLLRMA---SFKSKLTEKWFLIIYLVILIPMLLIVAIMFLNK 164 (254)
T ss_pred ceeeeehHHhhHHHHHHHHHHHHHHHHHHH---HHhccchhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444455555 677777778888888855 456665554555666666667777778888886
No 3
>PF06112 Herpes_capsid: Gammaherpesvirus capsid protein; InterPro: IPR009299 This family consists of several Gammaherpesvirus capsid proteins. The exact function of this family is unknown.; GO: 0019028 viral capsid
Probab=20.35 E-value=64 Score=29.68 Aligned_cols=39 Identities=23% Similarity=0.267 Sum_probs=25.6
Q ss_pred hhhhhhhcccccchhhHH---HHHHHHHHHHHHHHHHHHhhh
Q 017898 240 PLFAVYVTWPVLRLPALV---AVLPFLVGCAAQLAFETNLDK 278 (364)
Q Consensus 240 Plv~~~~~WP~~G~~a~v---aL~PYLvgl~VQ~afE~l~~~ 278 (364)
|++..+-.-|+--+.-.. +=--|||-+.+|..||+|++.
T Consensus 23 plv~~~~~L~q~Nms~~~y~~a~r~YLVFL~Aq~~Yd~yv~~ 64 (147)
T PF06112_consen 23 PLVAKLQALPQNNMSDAEYREAQRNYLVFLIAQHCYDQYVRR 64 (147)
T ss_pred HHHHHHHhhccCCCCHHHHHHhhhchhhhhhHHHHHHHHHHH
Confidence 445555555555332222 334699999999999999864
No 4
>PF07136 DUF1385: Protein of unknown function (DUF1385); InterPro: IPR010787 This family contains a number of hypothetical bacterial proteins of unknown function approximately 300 residues in length. Some family members are predicted to be metal-dependent.
Probab=19.55 E-value=2.1e+02 Score=27.91 Aligned_cols=31 Identities=19% Similarity=0.175 Sum_probs=20.7
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHhhhcCCCCc
Q 017898 250 VLRLPALVAVLPFLVGCAAQLAFETNLDKRGSSCW 284 (364)
Q Consensus 250 ~~G~~a~vaL~PYLvgl~VQ~afE~l~~~~kSP~W 284 (364)
|..+..-.++.|...|++ ||..-+-.|+..|
T Consensus 167 ~~r~~~ri~llPvvagis----YEiir~~~~~~~~ 197 (236)
T PF07136_consen 167 WWRILSRILLLPVVAGIS----YEIIRWAGRSDNP 197 (236)
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHhccCccH
Confidence 445677778889888875 5665555555543
No 5
>cd02796 tRNA_bind_bactPheRS tRNA-binding-domain-containing prokaryotic phenylalanly tRNA synthetase (PheRS) beta chain. PheRS aminoacylate phenylalanine transfer RNAs (tRNAphe). PheRSs belong structurally to class II aminoacyl tRNA synthetases (aaRSs) but, as they aminoacylate the 2'OH of the terminal ribose of tRNA they belong functionally to class 1 aaRSs. This domain has general tRNA binding properties and is believed to direct tRNAphe to the active site of the enzyme.
Probab=18.83 E-value=1.4e+02 Score=24.05 Aligned_cols=59 Identities=5% Similarity=-0.037 Sum_probs=42.6
Q ss_pred ccccccccccccccceeEeecCCCCCCCCCcCCCCCCCCCcc----ccCCCCCCCCCcceEee
Q 017898 61 KHKIEGYSAWSSKRGAILCASNSGSDTKLGFPSGENSSLPVA----IFNGPEPFRGKSGSVSF 119 (364)
Q Consensus 61 ~~~~~g~s~~~~~~~~~~~~s~s~~~~~~~~~~~~~~~~p~~----~~~~~e~~~GK~G~VSF 119 (364)
++++.|.+.+...++++++..+|....+.++.+++..|+.+. ++......+.+.|-+-+
T Consensus 31 ~~Iv~~~~n~~~g~~vvv~~~gs~l~~~~~i~~~~~~G~~S~GMl~s~~elg~~~~~~gi~~l 93 (103)
T cd02796 31 LQIVCGAPNVRAGDKVVVALPGAVLPGGLKIKKRKLRGVESEGMLCSAKELGLGEDSDGIIEL 93 (103)
T ss_pred EEEEcCccHhhcCCEEEEEecCCCcCCCceEcceeeCCcccchhCcchhHcCCCCCCCeEEEC
Confidence 467788888888888888887888777777888887777766 56665555555665543
No 6
>PRK09459 pspG phage shock protein G; Reviewed
Probab=18.30 E-value=5.3e+02 Score=21.64 Aligned_cols=17 Identities=29% Similarity=0.663 Sum_probs=13.5
Q ss_pred hhHHHHHHHHHHHHHhh
Q 017898 186 FESMFYVGLAIFLRITD 202 (364)
Q Consensus 186 ~EalFy~G~alFLlmaD 202 (364)
+|.+|.+|..+-|+++-
T Consensus 2 ~EllFvl~F~~~LlvTG 18 (76)
T PRK09459 2 LELLFVIGFFVMLLVTG 18 (76)
T ss_pred hhhHHHHHHHHHHHHHh
Confidence 58888888888888765
No 7
>COG0387 ChaA Ca2+/H+ antiporter [Inorganic ion transport and metabolism]
Probab=18.28 E-value=1.1e+03 Score=24.69 Aligned_cols=151 Identities=21% Similarity=0.306 Sum_probs=93.6
Q ss_pred hHHHHHHHHHHHHHhhccCCCcccCCCCCcCcccCcccchhhHhhhhhhhhhhhhhhhh----hcc-cccchhhHHHHHH
Q 017898 187 ESMFYVGLAIFLRITDRVQRPYLQFSPKRWGLITGLRGYLTSAFFTTGLKVVAPLFAVY----VTW-PVLRLPALVAVLP 261 (364)
Q Consensus 187 EalFy~G~alFLlmaD~~~RP~~q~s~~~~~~it~~~gY~~sa~~~~vlgviiPlv~~~----~~W-P~~G~~a~vaL~P 261 (364)
+.+...|.++++ --.+|=.+.+++.+-+ -|..--..+++..+++|.++=+ .-| ++..-.+.+.++=
T Consensus 108 ~~llv~Glslll---Gglr~~~Q~fN~~~a~------~~~~~L~~~~~ialv~P~~~~~~~~~~~~~~~s~~~avv~i~~ 178 (368)
T COG0387 108 NLLLVVGLSLLL---GGLRHKTQPFNPHGAG------TYLALLFTAATIALVLPTFFPYTGGGNFSLGQSLFVAVVLIAL 178 (368)
T ss_pred HHHHHHHHHHHH---cchhhceeecchhhHH------HHHHHHHHHHHHHhhhhhhhcccCCCcchHhHHHHHHHHHHHH
Confidence 334455655543 3444433445555544 3444445566888999988762 333 2333456668899
Q ss_pred HHHHHHHHHHHHHHh-----------hh-----cCCCCccc--------c---cee----------------------hh
Q 017898 262 FLVGCAAQLAFETNL-----------DK-----RGSSCWPL--------I---PII----------------------FE 292 (364)
Q Consensus 262 YLvgl~VQ~afE~l~-----------~~-----~kSP~Wpl--------v---PiI----------------------Fe 292 (364)
|.+++.-|..+-+.. +. ++.|.|.+ + .|+ |-
T Consensus 179 Y~lfL~fql~tH~~~f~~~~~~e~~~ee~~~h~~~~~~~s~~~s~~vLl~~tv~v~~lae~lv~~le~~l~~~g~~~~F~ 258 (368)
T COG0387 179 YGLFLFFQLKTHASLFWQVHEAEGEAEEDDPHHDDPSKWSVLLSTGVLLIATVLVALLAEILVGSLEAVLESLGAPPAFV 258 (368)
T ss_pred HHHHHHhhhhhhhhhhcccccccccCCCCCCCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH
Confidence 999999998765442 11 12223432 1 221 11
Q ss_pred hHHHHHHH-HHHHHHHHHhhHhcCCCCCchhhhhhhhhhHHHHHHHHHHHHHHHH
Q 017898 293 VYRLYQLS-KAANFIERLMFSMKDLPRSPELLERGSAMVSMVVIFQILGVVCLWS 346 (364)
Q Consensus 293 vYRl~QL~-RAAqLv~~L~F~vk~~e~t~~~l~i~~sL~~ll~vlQ~LgViciWS 346 (364)
.-=+--|- -+++.++++.+.+||-=...-|++.++++++.+-+.=++-++.+|-
T Consensus 259 G~iIa~lVgn~~E~~tAi~aA~~~~mqls~nia~Gsalq~~lltiP~lvlis~~~ 313 (368)
T COG0387 259 GLIIAALVGNAPEHLTALRAALNNRMQLSMNIAMGSALQTALLTIPVLVLISLFT 313 (368)
T ss_pred HHHHHHHhccCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 12222233 5677888899999998888889999999999988888887777664
No 8
>PF06712 DUF1199: Protein of unknown function (DUF1199); InterPro: IPR009588 This family consists of several hypothetical Feline immunodeficiency virus (FIV) proteins. Members of this family are typically around 67 residues long and are often annotated as ORF3 proteins. The function of this family is unknown.
Probab=16.45 E-value=45 Score=25.84 Aligned_cols=48 Identities=23% Similarity=0.416 Sum_probs=32.2
Q ss_pred CCCCCCCCccccCCCCCCCCCcceEeecCCCccccccCccccCccccCCCceEeehh
Q 017898 93 SGENSSLPVAIFNGPEPFRGKSGSVSFCGLTHQLVEEGKLMSAPFQEDKGSFLWILA 149 (364)
Q Consensus 93 ~~~~~~~p~~~~~~~e~~~GK~G~VSF~~~~~q~~eE~~l~ss~~~~~~~s~LWLLG 149 (364)
+|.+..||++.|-.-..|.-.+|+ .+. |-.-+|+|..+.+++|+=|||
T Consensus 3 ~rn~~~v~~~~~r~~ni~~~nq~s--------gsm-etstisspsrrirnnflgllg 50 (52)
T PF06712_consen 3 HRNSGFVPASIYRNNNIFTNNQGS--------GSM-ETSTISSPSRRIRNNFLGLLG 50 (52)
T ss_pred ccCCCcceeeEeecCCEeccCCCC--------Ccc-ccccccChhHHHHhhhhhhhc
Confidence 466677887776555444444433 233 445689999999999988776
No 9
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=14.75 E-value=7.8e+02 Score=25.32 Aligned_cols=18 Identities=11% Similarity=0.508 Sum_probs=12.4
Q ss_pred cccccccchHHHHHHhcc
Q 017898 157 LILPQMFLGNVIEDFIKD 174 (364)
Q Consensus 157 ~i~P~l~Lp~vissif~d 174 (364)
.+++++++..++..++.+
T Consensus 22 ~l~~p~~~~~iid~~~~~ 39 (544)
T TIGR01842 22 MLAPPLYMLQVYDRVLTS 39 (544)
T ss_pred HHHHHHHHHHHHHHhccC
Confidence 455677888888777643
No 10
>COG5617 Predicted integral membrane protein [Function unknown]
Probab=14.34 E-value=1.4e+03 Score=26.45 Aligned_cols=171 Identities=13% Similarity=0.094 Sum_probs=98.1
Q ss_pred CceEeehhhHHHHhhcccccccchHHHHHHhccchHHHHHHHhhhhHHHHHHHHHHHHHhhccCCCcccCCCCCcCcccC
Q 017898 142 GSFLWILAPVVLISSLILPQMFLGNVIEDFIKDNLLMEIVSSLTFESMFYVGLAIFLRITDRVQRPYLQFSPKRWGLITG 221 (364)
Q Consensus 142 ~s~LWLLGP~VLvAS~i~P~l~Lp~vissif~ds~lt~~LsLf~~EalFy~G~alFLlmaD~~~RP~~q~s~~~~~~it~ 221 (364)
-.++|.-+|. +++++-+++.+.+ +.++.+.. +++-.|.+|+..+++---
T Consensus 64 ~pflrYypPl---------~Yli~aal~~l~~-d~~~t~~v--~~~la~llG~~~~~~~r~------------------- 112 (801)
T COG5617 64 YPFLRYYPPL---------SYLIGAALNFLLG-DVVTTYAV--FLMLAFLLGAGGWLLWRL------------------- 112 (801)
T ss_pred CCcceecCcH---------HHHHHHHHHHhhc-ChhHHHHH--HHHHHHHHHHHHHHHHHh-------------------
Confidence 3478888886 5677888888888 55555554 455567899999987532
Q ss_pred cccch-hhHhhhhhhhhhhhhhhhhhccccc-chhhHHHHHHHHHHHHHHHHH-HHHhhhcCCCCccccceehhhHHHHH
Q 017898 222 LRGYL-TSAFFTTGLKVVAPLFAVYVTWPVL-RLPALVAVLPFLVGCAAQLAF-ETNLDKRGSSCWPLIPIIFEVYRLYQ 298 (364)
Q Consensus 222 ~~gY~-~sa~~~~vlgviiPlv~~~~~WP~~-G~~a~vaL~PYLvgl~VQ~af-E~l~~~~kSP~WplvPiIFevYRl~Q 298 (364)
+|++ .-++++.++.+..|=..=-+-|==. +-+.+..++||+.++-.-+.= -+-.|+.---.=.+.++.+.=+=.+-
T Consensus 113 -~g~t~~ia~I~alL~ltsp~~l~vlf~EGniP~v~~i~f~pl~l~~l~~~~~~Gkk~r~~l~~allmslv~~tH~m~~~ 191 (801)
T COG5617 113 -RGRTGFIALISALLWLTSPENLKVLFIEGNIPRVLAIGFGPLALGLLERFLERGKKERSLLRMALLMSLVLLTHPMGGA 191 (801)
T ss_pred -hccccchHHHHHHHHHhChhheEEEEecCcccHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2333 2244444555544433221111111 123455788988887544431 01111111112245666666666655
Q ss_pred HHHHHHHHHHHhhHhcCCCCCchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 017898 299 LSKAANFIERLMFSMKDLPRSPELLERGSAMVSMVVIFQILGVVCLWSLLTFL 351 (364)
Q Consensus 299 L~RAAqLv~~L~F~vk~~e~t~~~l~i~~sL~~ll~vlQ~LgViciWSlssFL 351 (364)
+.-.|-+.-.|.+.+ ..+-=+++ ++.+.+..|-+|+-..|+.=.-.
T Consensus 192 ~~g~a~i~~~l~yav------l~~kl~~~-~~~~~~~~~~i~i~~~w~~paL~ 237 (801)
T COG5617 192 LSGGALILRLLAYAV------LMKKLRNN-IQSIKTAGLGIGISSFWLYPALK 237 (801)
T ss_pred HHHHHHHHHHHHHHH------HHHhhccc-hHHHHhhhhhhhhhHHHHHHHHh
Confidence 555555555554433 22223445 88899999999999999986655
Done!