Query 017898
Match_columns 364
No_of_seqs 31 out of 33
Neff 2.8
Searched_HMMs 29240
Date Mon Mar 25 06:41:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017898.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017898hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1jb0_J Photosystem 1 reaction 13.9 1.6E+02 0.0054 21.0 3.2 27 333-359 8-37 (41)
2 1zl8_A LIN-7; heterodimer, alp 11.2 1.6E+02 0.0056 22.0 2.7 24 298-324 8-31 (53)
3 3p9y_A CG14216, LD40846P; phos 8.8 1.1E+02 0.0039 28.0 1.3 15 72-86 9-23 (198)
4 4e8u_A Putative uncharacterize 8.0 75 0.0026 28.3 -0.3 9 246-254 9-17 (172)
5 2rqw_B 24-meric peptide from s 6.3 1.6E+02 0.0053 19.4 0.7 9 353-361 7-15 (26)
6 2qq8_A TBC1 domain family memb 5.7 5.8E+02 0.02 23.3 4.4 49 157-205 223-278 (334)
7 3b5x_A Lipid A export ATP-bind 5.3 1E+03 0.035 23.3 6.2 16 158-173 42-57 (582)
8 3hzj_A Rabgap1L, RAB GTPase-ac 5.0 7.8E+02 0.027 21.9 4.8 50 156-205 183-239 (310)
9 3qbg_A Halorhodopsin; membrane 4.8 7E+02 0.024 23.3 4.4 37 166-204 23-59 (291)
10 3qye_A TBC1 domain family memb 4.8 6.4E+02 0.022 22.6 4.0 51 155-205 216-273 (331)
No 1
>1jb0_J Photosystem 1 reaction centre subunit IX; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.23.18.1 PDB: 3pcq_J*
Probab=13.85 E-value=1.6e+02 Score=21.05 Aligned_cols=27 Identities=15% Similarity=0.305 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHh---hhCCCCC
Q 017898 333 VVIFQILGVVCLWSLLTFLL---RLFPSRP 359 (364)
Q Consensus 333 l~vlQ~LgViciWSlssFLm---r~fps~~ 359 (364)
+++--+++++|+...+.++. ||||.+-
T Consensus 8 LstAPVla~~w~~~tAg~lIEiNRffPD~L 37 (41)
T 1jb0_J 8 LSTAPVLAAIWMTITAGILIEFNRFYPDLL 37 (41)
T ss_dssp TTBHHHHHHHHHHHHHHHHHHHHHHSCCCS
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHhCcccc
Confidence 44556789999999988875 8999864
No 2
>1zl8_A LIN-7; heterodimer, alpha helix, scaffold, assembly, specifici signaling, protein binding; NMR {Caenorhabditis elegans} SCOP: a.194.1.1
Probab=11.19 E-value=1.6e+02 Score=22.04 Aligned_cols=24 Identities=13% Similarity=0.171 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHhhHhcCCCCCchhhh
Q 017898 298 QLSKAANFIERLMFSMKDLPRSPELLE 324 (364)
Q Consensus 298 QL~RAAqLv~~L~F~vk~~e~t~~~l~ 324 (364)
-++||.+|.+.| -|..|..+++|+
T Consensus 8 Dv~RaiELle~l---q~sgevp~~KL~ 31 (53)
T 1zl8_A 8 DVQRILELMEHV---QKTGEVNNAKLA 31 (53)
T ss_dssp HHHHHHHHHHHH---GGGSSSTHHHHH
T ss_pred HHHHHHHHHHHH---HHcCCCCcHHHH
Confidence 368999999999 678888888875
No 3
>3p9y_A CG14216, LD40846P; phosphatase, CIS proline, LMW PTP-like fold, RNA polymerase hydrolase; HET: N7P SEP SET IMD PG4; 2.10A {Drosophila melanogaster} PDB: 3fdf_A 3fmv_A 3omx_A 3omw_A
Probab=8.84 E-value=1.1e+02 Score=27.99 Aligned_cols=15 Identities=20% Similarity=0.104 Sum_probs=12.2
Q ss_pred cccceeEeecCCCCC
Q 017898 72 SKRGAILCASNSGSD 86 (364)
Q Consensus 72 ~~~~~~~~~s~s~~~ 86 (364)
.-|-+++||||-|+.
T Consensus 9 ~l~~avVCaSN~NRS 23 (198)
T 3p9y_A 9 KLAVAVVDSSNMNRS 23 (198)
T ss_dssp CCEEEEEESSSSSHH
T ss_pred CceEEEEcCCCCccc
Confidence 368899999998865
No 4
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=7.96 E-value=75 Score=28.34 Aligned_cols=9 Identities=11% Similarity=0.327 Sum_probs=6.9
Q ss_pred hcccccchh
Q 017898 246 VTWPVLRLP 254 (364)
Q Consensus 246 ~~WP~~G~~ 254 (364)
++|||+||.
T Consensus 9 ~VWPwmgIl 17 (172)
T 4e8u_A 9 LVYPWKGIV 17 (172)
T ss_dssp EEESCEEEE
T ss_pred EECCCEEEE
Confidence 478998865
No 5
>2rqw_B 24-meric peptide from serine/threonine-protein KI STE20; BEM1P, STE20P, SH3CI, PRR, cytoplasm, cytoskeleton, SH3 DOMA cycle; NMR {Saccharomyces cerevisiae}
Probab=6.27 E-value=1.6e+02 Score=19.40 Aligned_cols=9 Identities=44% Similarity=1.043 Sum_probs=7.3
Q ss_pred hhCCCCCCC
Q 017898 353 RLFPSRPVA 361 (364)
Q Consensus 353 r~fps~~v~ 361 (364)
||+|+||-+
T Consensus 7 KFiPsRPAP 15 (26)
T 2rqw_B 7 KFIPSRPAP 15 (26)
T ss_dssp SSCCSSCCC
T ss_pred ccccCCCCC
Confidence 789999865
No 6
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens}
Probab=5.69 E-value=5.8e+02 Score=23.28 Aligned_cols=49 Identities=18% Similarity=0.272 Sum_probs=33.3
Q ss_pred cccccccchHHHHHHhccch-------HHHHHHHhhhhHHHHHHHHHHHHHhhccC
Q 017898 157 LILPQMFLGNVIEDFIKDNL-------LMEIVSSLTFESMFYVGLAIFLRITDRVQ 205 (364)
Q Consensus 157 ~i~P~l~Lp~vissif~ds~-------lt~~LsLf~~EalFy~G~alFLlmaD~~~ 205 (364)
.+-|.+|.-+-+-.+|.+++ +-|.+..-|.+.+|++++|++...-|++-
T Consensus 223 ~i~~~~~~~~W~ltlF~~~lp~~~~lriWD~~l~eg~~~l~~valaiL~~~~~~Ll 278 (334)
T 2qq8_A 223 NLTPDIYLIDWIFTLYSKSLPLDLACRIWDVFCRDGEEFLFRTALGILKLFEDILT 278 (334)
T ss_dssp TCCGGGTHHHHHHTTTTTTSCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTHHHHH
T ss_pred CCCccchHHHHHHHHhcccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence 45555555555555555544 55666667788999999999988777654
No 7
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=5.32 E-value=1e+03 Score=23.27 Aligned_cols=16 Identities=6% Similarity=0.052 Sum_probs=10.1
Q ss_pred ccccccchHHHHHHhc
Q 017898 158 ILPQMFLGNVIEDFIK 173 (364)
Q Consensus 158 i~P~l~Lp~vissif~ 173 (364)
+++++++..++..+..
T Consensus 42 ~~~~~~~~~~id~~~~ 57 (582)
T 3b5x_A 42 TYMISLLKPLLDEGFG 57 (582)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 4456667777776654
No 8
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens}
Probab=5.03 E-value=7.8e+02 Score=21.90 Aligned_cols=50 Identities=10% Similarity=0.240 Sum_probs=35.1
Q ss_pred hcccccccchHHHHHHhccch-------HHHHHHHhhhhHHHHHHHHHHHHHhhccC
Q 017898 156 SLILPQMFLGNVIEDFIKDNL-------LMEIVSSLTFESMFYVGLAIFLRITDRVQ 205 (364)
Q Consensus 156 S~i~P~l~Lp~vissif~ds~-------lt~~LsLf~~EalFy~G~alFLlmaD~~~ 205 (364)
..+-|.+|.-+-+-.+|.+.. +-|.+..-+.+.+|++++|++...-|+.-
T Consensus 183 ~~i~~~~~~~~W~ltlF~~~lp~~~~~riwD~~l~~g~~~l~~v~lail~~~~~~Ll 239 (310)
T 3hzj_A 183 LNLEAHMYASQWFLTLFTAKFPLCMVFHIIDLLLCEGLNIIFHVALALLKTSKEDLL 239 (310)
T ss_dssp HTCCGGGTSHHHHHHTTTTTSCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHTHHHHH
T ss_pred cCCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHH
Confidence 355666666656666666653 56666777888999999999888777643
No 9
>3qbg_A Halorhodopsin; membrane protein, ION pump, retinal, membrane; HET: RET BNG 22B; 1.80A {Natronomonas pharaonis} PDB: 3a7k_A* 3abw_A* 3qbi_A* 3qbk_A* 3qbl_A*
Probab=4.78 E-value=7e+02 Score=23.29 Aligned_cols=37 Identities=16% Similarity=0.234 Sum_probs=16.3
Q ss_pred HHHHHHhccchHHHHHHHhhhhHHHHHHHHHHHHHhhcc
Q 017898 166 NVIEDFIKDNLLMEIVSSLTFESMFYVGLAIFLRITDRV 204 (364)
Q Consensus 166 ~vissif~ds~lt~~LsLf~~EalFy~G~alFLlmaD~~ 204 (364)
.+++.+..|..+-|-+-..+ ++|-++..+|+.+..++
T Consensus 23 ~~~~~~~~~~~~~~~lW~v~--~~m~~~tv~F~~~~~~v 59 (291)
T 3qbg_A 23 ELFEFVLNDPLLASSLYINI--ALAGLSILLFVFMTRGL 59 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHH--HHHHHHHHHHHHHTTTC
T ss_pred HHHHHhccCCeeeeeHHHHH--HHHHHHHHHHHHHHhcC
Confidence 34444444444444443333 44444444444444433
No 10
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=4.77 E-value=6.4e+02 Score=22.64 Aligned_cols=51 Identities=12% Similarity=0.195 Sum_probs=35.3
Q ss_pred hhcccccccchHHHHHHhccch-------HHHHHHHhhhhHHHHHHHHHHHHHhhccC
Q 017898 155 SSLILPQMFLGNVIEDFIKDNL-------LMEIVSSLTFESMFYVGLAIFLRITDRVQ 205 (364)
Q Consensus 155 AS~i~P~l~Lp~vissif~ds~-------lt~~LsLf~~EalFy~G~alFLlmaD~~~ 205 (364)
...+-|.+|.-+-+-.+|.+.. +-|.+..-+.+.+|++++|++...-|+.-
T Consensus 216 ~~~i~~~~~~~~W~l~lF~~~lp~~~~lrlwD~~l~~g~~~l~~valaiL~~~~~~ll 273 (331)
T 3qye_A 216 EHEIGPSLYAAPWFLTMFASQFPLGFVARVFDMIFLQGTEVIFKVALSLLGSHKPLIL 273 (331)
T ss_dssp HTTCCGGGTSHHHHHSTTTTTSCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHTHHHHH
T ss_pred HcCCChHHHHHHHHHHHhhhhCCHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHh
Confidence 3455566665555555665553 66777777888999999999988777643
Done!