Query 017898
Match_columns 364
No_of_seqs 31 out of 33
Neff 2.8
Searched_HMMs 13730
Date Mon Mar 25 06:42:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017898.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/017898hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1jb0j_ f.23.18.1 (J:) Subunit 11.8 76 0.0055 21.1 2.7 28 331-358 6-36 (41)
2 d2ds5a1 g.39.1.11 (A:11-48) Cl 7.8 46 0.0033 21.6 0.3 17 118-136 5-21 (38)
3 d1f5qb1 a.74.1.1 (B:6-146) Vir 7.3 2.2E+02 0.016 21.3 4.3 13 336-348 86-98 (141)
4 d1jnya1 b.43.3.1 (A:228-322) E 6.9 1E+02 0.0074 22.0 1.9 22 63-84 71-92 (95)
5 d1mjsa_ b.26.1.1 (A:) Smad3 MH 6.4 74 0.0054 26.5 1.0 24 280-313 163-186 (190)
6 d3b60a2 f.37.1.1 (A:10-328) Mu 5.4 2E+02 0.014 21.7 3.0 19 158-176 33-51 (319)
7 d1iica2 d.108.1.2 (A:219-455) 5.3 89 0.0065 27.0 0.9 21 107-127 98-119 (237)
8 d1wb1a1 b.43.3.1 (A:180-271) E 4.8 1.1E+02 0.0079 21.9 1.0 20 64-83 73-92 (92)
9 d1fftb2 f.17.2.1 (B:27-117) Cy 4.6 55 0.004 23.7 -0.9 20 143-162 63-82 (91)
10 d1dyta_ d.5.1.1 (A:) Eosinophi 4.5 1.1E+02 0.0081 23.9 0.8 13 277-289 115-127 (133)
No 1
>d1jb0j_ f.23.18.1 (J:) Subunit IX of photosystem I reaction centre, PsaJ {Synechococcus elongatus [TaxId: 32046]}
Probab=11.84 E-value=76 Score=21.10 Aligned_cols=28 Identities=14% Similarity=0.337 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh---hhCCCC
Q 017898 331 SMVVIFQILGVVCLWSLLTFLL---RLFPSR 358 (364)
Q Consensus 331 ~ll~vlQ~LgViciWSlssFLm---r~fps~ 358 (364)
+-+++--++..+|++....+|. ||||.+
T Consensus 6 ~ylstAPVla~~w~~~tAG~lIEiNRFfPD~ 36 (41)
T d1jb0j_ 6 TYLSTAPVLAAIWMTITAGILIEFNRFYPDL 36 (41)
T ss_dssp HHTTBHHHHHHHHHHHHHHHHHHHHHHSCCC
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHhhCchh
Confidence 4455667889999999999986 899975
No 2
>d2ds5a1 g.39.1.11 (A:11-48) ClpX chaperone zinc binding domain {Escherichia coli [TaxId: 562]}
Probab=7.82 E-value=46 Score=21.55 Aligned_cols=17 Identities=41% Similarity=0.829 Sum_probs=11.5
Q ss_pred eecCCCccccccCccccCc
Q 017898 118 SFCGLTHQLVEEGKLMSAP 136 (364)
Q Consensus 118 SF~~~~~q~~eE~~l~ss~ 136 (364)
||||++.+. -++++..+
T Consensus 5 SFCgk~~~e--V~~LI~G~ 21 (38)
T d2ds5a1 5 SFCGKSQHE--VRKLIAGP 21 (38)
T ss_dssp TTTCCBTTT--SSCEEECS
T ss_pred eCCCCCHHH--HHHHhcCC
Confidence 899999664 45555544
No 3
>d1f5qb1 a.74.1.1 (B:6-146) Viral cyclin {Murine herpesvirus 68 [TaxId: 33708]}
Probab=7.28 E-value=2.2e+02 Score=21.31 Aligned_cols=13 Identities=23% Similarity=0.130 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHH
Q 017898 336 FQILGVVCLWSLL 348 (364)
Q Consensus 336 lQ~LgViciWSls 348 (364)
+|.+|+.|+|--+
T Consensus 86 lqL~a~tcL~IAs 98 (141)
T d1f5qb1 86 YQSTAAVALHIAG 98 (141)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7999999999433
No 4
>d1jnya1 b.43.3.1 (A:228-322) Elongation factor eEF-1alpha, domain 2 {Archaeon Sulfolobus solfataricus [TaxId: 2287]}
Probab=6.87 E-value=1e+02 Score=21.98 Aligned_cols=22 Identities=23% Similarity=0.374 Sum_probs=18.3
Q ss_pred ccccccccccccceeEeecCCC
Q 017898 63 KIEGYSAWSSKRGAILCASNSG 84 (364)
Q Consensus 63 ~~~g~s~~~~~~~~~~~~s~s~ 84 (364)
.++|+.....+||-++|+.|+.
T Consensus 71 ~l~~i~~~~i~rG~vl~~~~~~ 92 (95)
T d1jnya1 71 NVRGVEKKDIKRGDVVGHPNNP 92 (95)
T ss_dssp EEESSCGGGCCTTCEEECTTSC
T ss_pred EEEcCcHHhcCCCCEEECCCcc
Confidence 4678888889999999988753
No 5
>d1mjsa_ b.26.1.1 (A:) Smad3 MH2 domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.38 E-value=74 Score=26.47 Aligned_cols=24 Identities=17% Similarity=0.679 Sum_probs=20.5
Q ss_pred CCCCccccceehhhHHHHHHHHHHHHHHHHhhHh
Q 017898 280 GSSCWPLIPIIFEVYRLYQLSKAANFIERLMFSM 313 (364)
Q Consensus 280 kSP~WplvPiIFevYRl~QL~RAAqLv~~L~F~v 313 (364)
..|||.-| .|++++|++++.+=+|
T Consensus 163 stPCWiEi----------~l~~pl~~ld~vL~~m 186 (190)
T d1mjsa_ 163 STPCWIEL----------HLNGPLQWLDKVLTQM 186 (190)
T ss_dssp TSSSEEEE----------EEHHHHHHHHHHHHHT
T ss_pred cCCEEEEE----------ecCChhHHHHHHHhhc
Confidence 37999887 8999999999988655
No 6
>d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]}
Probab=5.36 E-value=2e+02 Score=21.66 Aligned_cols=19 Identities=11% Similarity=0.067 Sum_probs=10.8
Q ss_pred ccccccchHHHHHHhccch
Q 017898 158 ILPQMFLGNVIEDFIKDNL 176 (364)
Q Consensus 158 i~P~l~Lp~vissif~ds~ 176 (364)
++.++.+..++.+++.+..
T Consensus 33 ~~~~~~~~~~id~~~~~~~ 51 (319)
T d3b60a2 33 TFMLSLLKPLLDDGFGKTD 51 (319)
T ss_dssp HHHHHHHTHHHHSSTTSTT
T ss_pred HHHHHHHHHHHHHHhccCC
Confidence 3445556666666665544
No 7
>d1iica2 d.108.1.2 (A:219-455) N-myristoyl transferase, NMT {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=5.29 E-value=89 Score=27.01 Aligned_cols=21 Identities=29% Similarity=0.381 Sum_probs=15.5
Q ss_pred CCCCCCC-cceEeecCCCcccc
Q 017898 107 PEPFRGK-SGSVSFCGLTHQLV 127 (364)
Q Consensus 107 ~e~~~GK-~G~VSF~~~~~q~~ 127 (364)
+|..+|| ..++|||..|+...
T Consensus 98 ve~~~g~ITDF~SFY~Lpstvi 119 (237)
T d1iica2 98 VEQPDGKITDFFSFYSLPFTIL 119 (237)
T ss_dssp EECTTSCEEEEEEEEECCEEEC
T ss_pred EECCCCcEeeEEEEEecchhhh
Confidence 3444565 68999999998753
No 8
>d1wb1a1 b.43.3.1 (A:180-271) Elongation factor SelB, domains 2 and 4 {Methanococcus maripaludis [TaxId: 39152]}
Probab=4.85 E-value=1.1e+02 Score=21.88 Aligned_cols=20 Identities=35% Similarity=0.519 Sum_probs=15.6
Q ss_pred cccccccccccceeEeecCC
Q 017898 64 IEGYSAWSSKRGAILCASNS 83 (364)
Q Consensus 64 ~~g~s~~~~~~~~~~~~s~s 83 (364)
++|+.....+||-++|+.||
T Consensus 73 L~gi~~~~i~rG~vl~~~~s 92 (92)
T d1wb1a1 73 IQGVDAKQIYRGCILTSKDT 92 (92)
T ss_dssp CSSCCSSCCCSSCBCCCTTC
T ss_pred EcCCCHHHcCCcCEEeCCCC
Confidence 56777777889999988765
No 9
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=4.62 E-value=55 Score=23.66 Aligned_cols=20 Identities=15% Similarity=0.177 Sum_probs=17.2
Q ss_pred ceEeehhhHHHHhhcccccc
Q 017898 143 SFLWILAPVVLISSLILPQM 162 (364)
Q Consensus 143 s~LWLLGP~VLvAS~i~P~l 162 (364)
-..|-+.|++++....+|++
T Consensus 63 Ei~WtiIP~iil~~iav~s~ 82 (91)
T d1fftb2 63 EAVVWTVPILIIIFLAVLTW 82 (91)
T ss_dssp HHHTTHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHH
Confidence 48899999999998888765
No 10
>d1dyta_ d.5.1.1 (A:) Eosinophil cationic protein (ECP), ribonuclease 3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.46 E-value=1.1e+02 Score=23.94 Aligned_cols=13 Identities=38% Similarity=0.938 Sum_probs=0.0
Q ss_pred hhcCCCCccccce
Q 017898 277 DKRGSSCWPLIPI 289 (364)
Q Consensus 277 ~~~kSP~WplvPi 289 (364)
+.|.+|-||+|||
T Consensus 115 ~~~d~~~yp~vPV 127 (133)
T d1dyta_ 115 DPRDSPRYPVVPV 127 (133)
T ss_dssp CTTSCTTCSEEEE
T ss_pred CcCcCCCCCccce
Done!