Your job contains 1 sequence.
>017902
MMYSLRRVMAQIGRSQTTVKRIILYSPAHFTRPFSSRAHQFTKATTKTTTSKDVVWPKPS
EIPFQVKVANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAASHSLWIPILFEGDLAHI
ASSHLKKDDHVHIAGQLTADPPAIEGQANVQVMVHSLNLIEPTSQKRMFFVSKKQEAATV
DHSVKISSSKKDGDSALSSWRDLLDNPEQWRDYRSDKLKGLVKPRYPDFKRKDGTLPLWL
NSAPDWVLSELEGVVFDKSKPVLDDQTRKSNYVKKSKGVVFDKSKPVLDDQTQKSNYVKK
SKVDDLWKDLVENPDKWWDNRLDKKSEKGPDFKHKETGKPLWLNYSPAWVTSQLPPVKST
VKSK
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 017902
(364 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2119767 - symbol:PTAC9 "plastid transcriptiona... 534 1.9e-51 1
TAIR|locus:2015721 - symbol:OSB4 "organellar single-stran... 330 6.8e-47 2
TAIR|locus:505006672 - symbol:OSB3 "organellar single-str... 484 3.8e-46 1
TAIR|locus:2015353 - symbol:OSB1 "Organellar Single-stran... 202 6.9e-16 1
>TAIR|locus:2119767 [details] [associations]
symbol:PTAC9 "plastid transcriptionally active 9"
species:3702 "Arabidopsis thaliana" [GO:0003697 "single-stranded
DNA binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0009507 "chloroplast" evidence=ISM] [GO:0009295
"nucleoid" evidence=IDA] [GO:0009508 "plastid chromosome"
evidence=IDA] InterPro:IPR000424 PROSITE:PS50935 GO:GO:0009507
EMBL:CP002687 GenomeReviews:CT486007_GR EMBL:AL021637 EMBL:AL161552
GO:GO:0003697 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
EMBL:AK118242 EMBL:BT026461 IPI:IPI00529933 IPI:IPI00656999
PIR:T04885 RefSeq:NP_001031674.1 RefSeq:NP_567593.1 UniGene:At.1899
ProteinModelPortal:Q8GXH3 SMR:Q8GXH3 STRING:Q8GXH3 PaxDb:Q8GXH3
PRIDE:Q8GXH3 EnsemblPlants:AT4G20010.1 GeneID:827746
KEGG:ath:AT4G20010 TAIR:At4g20010 eggNOG:NOG326142
HOGENOM:HOG000114724 InParanoid:O49428 OMA:PNEIAYE PhylomeDB:Q8GXH3
ProtClustDB:CLSN2688130 Genevestigator:Q8GXH3 GO:GO:0009508
Uniprot:Q8GXH3
Length = 371
Score = 534 (193.0 bits), Expect = 1.9e-51, P = 1.9e-51
Identities = 113/230 (49%), Positives = 150/230 (65%)
Query: 57 PKPSEIPFQVKVANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAASHS--LWIPILFE 114
P+P+EI ++ +VAN VNLIG VD PVQF+ SSDGK WAGTVI Q +AS S WIPI+FE
Sbjct: 86 PRPNEIAYESEVANWVNLIGFVDQPVQFEASSDGKFWAGTVISQRSASDSSGFWIPIIFE 145
Query: 115 GDLAHIASSHLKKDDHVHIAGQLTAD--PPAIE-GQANVQVMVHSLNLIEPTSQKRM-FF 170
GDLA A+ ++ KDD +H++G+L D PP + QANVQV+V +LN I+P S F
Sbjct: 146 GDLAKTAARYVSKDDQIHVSGKLFIDSPPPNMTYAQANVQVLVQNLNFIQPMSPSPSPFM 205
Query: 171 VSKKQEAATVDHSVKISSSKKDG--DSALSSWRDLLDNPEQWRDYRSDKLKGLVKPRYPD 228
V E + + +K+D D A SW L++NP++W D+R +K+ GLVKPR+PD
Sbjct: 206 VMSSSEKEESGIKKQPARAKQDIVIDEASDSWNHLIENPKEWWDHRENKVNGLVKPRHPD 265
Query: 229 FKRKDGTLPLWLNSAPDWVLSELEGVVFDKSKPVLDDQTRKSNYVKKSKG 278
FK KD + LWLN AP+WVL +LEG+ FD P K+ VK+ KG
Sbjct: 266 FKSKDSSFSLWLNKAPNWVLPKLEGLEFDVLVP-------KARVVKQLKG 308
Score = 267 (99.0 bits), Expect = 3.8e-23, P = 3.8e-23
Identities = 51/116 (43%), Positives = 73/116 (62%)
Query: 249 SELEGVVFDKSKPVLDDQTRKSNYVKKSKGVVFDKSKPV-LDDQTQKSNYVKKSKVDDLW 307
+++ G+V + + S ++ K+ V K + + D K+ VK+ K ++ W
Sbjct: 253 NKVNGLVKPRHPDFKSKDSSFSLWLNKAPNWVLPKLEGLEFDVLVPKARVVKQLKGEESW 312
Query: 308 KDLVENPDKWWDNRLDKKSEKGPDFKHKETGKPLWLNYSPAWVTSQLPPVKSTVKS 363
KDLV+NPDKWWDNR+DK++ K PDFKHKETG+ LWLN SP WV +LPPVK +S
Sbjct: 313 KDLVQNPDKWWDNRIDKRNAKAPDFKHKETGEALWLNESPTWVLPKLPPVKKKQES 368
Score = 134 (52.2 bits), Expect = 4.5e-06, P = 4.5e-06
Identities = 24/57 (42%), Positives = 35/57 (61%)
Query: 302 KVDDLWKDLVENPDKWWDNRLDKKS----EKGPDFKHKETGKPLWLNYSPAWVTSQL 354
+ D W L+ENP +WWD+R +K + + PDFK K++ LWLN +P WV +L
Sbjct: 232 EASDSWNHLIENPKEWWDHRENKVNGLVKPRHPDFKSKDSSFSLWLNKAPNWVLPKL 288
Score = 132 (51.5 bits), Expect = 7.6e-06, P = 7.6e-06
Identities = 26/56 (46%), Positives = 34/56 (60%)
Query: 199 SWRDLLDNPEQWRDYRSDKLKGLVKPRYPDFKRKDGTLPLWLNSAPDWVLSELEGV 254
SW+DL+ NP++W D R DK + PDFK K+ LWLN +P WVL +L V
Sbjct: 311 SWKDLVQNPDKWWDNRIDKRNA----KAPDFKHKETGEALWLNESPTWVLPKLPPV 362
>TAIR|locus:2015721 [details] [associations]
symbol:OSB4 "organellar single-stranded DNA binding
protein 4" species:3702 "Arabidopsis thaliana" [GO:0003697
"single-stranded DNA binding" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0009507 "chloroplast"
evidence=ISM] InterPro:IPR000424 PROSITE:PS50935 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0009507 GO:GO:0003697
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 EMBL:AC000107
HOGENOM:HOG000114724 ProtClustDB:CLSN2688130 EMBL:AY086580
IPI:IPI00528208 PIR:G86435 RefSeq:NP_564370.1 UniGene:At.40440
ProteinModelPortal:Q9FYJ2 SMR:Q9FYJ2 PaxDb:Q9FYJ2 PRIDE:Q9FYJ2
EnsemblPlants:AT1G31010.1 GeneID:839987 KEGG:ath:AT1G31010
TAIR:At1g31010 eggNOG:NOG304474 InParanoid:Q9FYJ2 OMA:VISHEPS
PhylomeDB:Q9FYJ2 Genevestigator:Q9FYJ2 Uniprot:Q9FYJ2
Length = 360
Score = 330 (121.2 bits), Expect = 7.9e-30, P = 7.9e-30
Identities = 89/248 (35%), Positives = 128/248 (51%)
Query: 103 ASHSLWIPILFEGDLAHIASSHLKKDDHVHIAGQLTAD---PPAIEGQANVQ-------- 151
+S + WIP+LFEGDLAH A+S+LKK+D VHI GQ+ D A QA+VQ
Sbjct: 115 SSSNFWIPVLFEGDLAHTANSYLKKNDRVHITGQILGDVIQSGANSDQAHVQLFKSFHGS 174
Query: 152 ----VMVHSLNLIEPTSQKRMFFVSKKQEAATVDHSVKISSSKKDGDSALSSWRDLLDNP 207
VMV L+ IE + + Q + HS + ++ G + W DL+D P
Sbjct: 175 FSHQVMVRDLHYIEGSKAMPKVLPTLDQNEGVLKHSASVQRGREFGTNL---WFDLVDKP 231
Query: 208 EQWRDYRSDKLKGLVKPRYPDFKRKDGTLPLWLNSAPDWVLSELEGVVFDKSKPVLDDQT 267
+W DYR K G V P++PDFK+KDG+ LWLN+AP +LSEL+ V FD K +
Sbjct: 232 NEWCDYREMKQNGSVNPKHPDFKKKDGSQALWLNNAPTEILSELKDVKFDIPKYAKQPKA 291
Query: 268 RKSNYVKKSKGVVFDKSK---PVLDDQTQKS-NYVKKSKVDDLWKDLVENPDKWWDNRLD 323
+ ++ K +V + +K +D +T KS ++ K LW L ++P W +L
Sbjct: 292 GEESW----KDLVDNMNKWWDNRVDKRTPKSPDFKHKETGVGLW--LSDSPS-WVLEKLP 344
Query: 324 KKSEKGPD 331
K D
Sbjct: 345 PPKSKTSD 352
Score = 280 (103.6 bits), Expect = 6.8e-47, Sum P(2) = 6.8e-47
Identities = 57/109 (52%), Positives = 74/109 (67%)
Query: 56 WPKPSEIPFQVKVANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAASHS--------- 106
WP+P E+P+Q K+ANS++LIG+V PVQF ++ DGK WAGTVI +S S
Sbjct: 59 WPRPMEVPYQPKIANSIDLIGYVHQPVQFDSTLDGKFWAGTVISHEPSSDSKSESDSSSN 118
Query: 107 LWIPILFEGDLAHIASSHLKKDDHVHIAGQLTAD---PPAIEGQANVQV 152
WIP+LFEGDLAH A+S+LKK+D VHI GQ+ D A QA+VQ+
Sbjct: 119 FWIPVLFEGDLAHTANSYLKKNDRVHITGQILGDVIQSGANSDQAHVQL 167
Score = 228 (85.3 bits), Expect = 6.8e-47, Sum P(2) = 6.8e-47
Identities = 39/64 (60%), Positives = 50/64 (78%)
Query: 297 YVKKSKV-DDLWKDLVENPDKWWDNRLDKKSEKGPDFKHKETGKPLWLNYSPAWVTSQLP 355
Y K+ K ++ WKDLV+N +KWWDNR+DK++ K PDFKHKETG LWL+ SP+WV +LP
Sbjct: 285 YAKQPKAGEESWKDLVDNMNKWWDNRVDKRTPKSPDFKHKETGVGLWLSDSPSWVLEKLP 344
Query: 356 PVKS 359
P KS
Sbjct: 345 PPKS 348
Score = 128 (50.1 bits), Expect = 2.2e-36, Sum P(2) = 2.2e-36
Identities = 35/100 (35%), Positives = 54/100 (54%)
Query: 268 RKSNYVKKSKGVVFDKSKPVLDDQT---QKSNYVKKSKV--DDLWKDLVENPDKWWDNRL 322
R +Y++ SK + K P LD + S V++ + +LW DLV+ P++W D R
Sbjct: 182 RDLHYIEGSKAM--PKVLPTLDQNEGVLKHSASVQRGREFGTNLWFDLVDKPNEWCDYRE 239
Query: 323 DKKS----EKGPDFKHKETGKPLWLNYSPAWVTSQLPPVK 358
K++ K PDFK K+ + LWLN +P + S+L VK
Sbjct: 240 MKQNGSVNPKHPDFKKKDGSQALWLNNAPTEILSELKDVK 279
Score = 41 (19.5 bits), Expect = 2.8e-18, Sum P(2) = 2.8e-18
Identities = 16/54 (29%), Positives = 25/54 (46%)
Query: 153 MVHSLNLIEPTSQKRMF--FVSKKQEAATVDHSVKISSSKKDGDSALSSWRDLL 204
+ +S++LI Q F + K A TV S SK + DS+ + W +L
Sbjct: 71 IANSIDLIGYVHQPVQFDSTLDGKFWAGTVISHEPSSDSKSESDSSSNFWIPVL 124
>TAIR|locus:505006672 [details] [associations]
symbol:OSB3 "organellar single-stranded DNA binding
protein 3" species:3702 "Arabidopsis thaliana" [GO:0003697
"single-stranded DNA binding" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0009507 "chloroplast"
evidence=ISM;IDA] [GO:0005739 "mitochondrion" evidence=IDA]
InterPro:IPR000424 PROSITE:PS50935 GO:GO:0005739 EMBL:CP002688
GO:GO:0009507 GO:GO:0003697 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 IPI:IPI00535730 RefSeq:NP_974885.1 UniGene:At.19937
ProteinModelPortal:F4KBP3 PRIDE:F4KBP3 EnsemblPlants:AT5G44785.2
GeneID:834508 KEGG:ath:AT5G44785 OMA:EISNWIN Uniprot:F4KBP3
Length = 442
Score = 484 (175.4 bits), Expect = 3.8e-46, P = 3.8e-46
Identities = 112/292 (38%), Positives = 170/292 (58%)
Query: 59 PSEIPFQVKVANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAASHS--LWIPILFEGD 116
P +I ++ +++N +NLIG V+ PVQF SDGK WAGTVI Q + S S WIPI+FEGD
Sbjct: 71 PKKIEYKPEISNWINLIGFVEQPVQFGPCSDGKFWAGTVISQRSGSKSSNFWIPIIFEGD 130
Query: 117 LAHIASSHLKKDDHVHIAGQLTAD--PPAIE-GQANVQVMVHSLNLIEPTSQKRMFFVSK 173
LA IA H+KK+D +H++G+L D PP + Q+NVQVMV +LN ++ +
Sbjct: 131 LAKIAVQHVKKEDRIHVSGKLFIDSPPPNVTYSQSNVQVMVQNLNFVQAATSTTKTISPP 190
Query: 174 KQEAATVDHSVKISSSKKDGDSALS-SWRDLLDNPEQWRDYRSDKLKGLVKPRYPDFKRK 232
++E ++ S K D S SW+ L++NP++W D+R +K GLVKP +PDFK K
Sbjct: 191 EKEVTSIKKKPARSKKVKVIDEETSNSWKHLIENPKEWLDHRGNKANGLVKPGHPDFKMK 250
Query: 233 DGTLPLWLNSAPDWVLSELEGVVFDKSKPVLDDQTRKSNYVKKS--KGVVFDKSKPVLDD 290
G L LWL++APDW L +LE + FD P + + + + + K +V + K LD+
Sbjct: 251 VGGLSLWLSTAPDWALLKLEELKFDVLVPKGNIKLNQLKDIGEESWKDLVQNPDK-WLDN 309
Query: 291 QTQKSN-----YVKKSKVDDLWKDLVENPDKWWDNRLD--KKSEKGPDFKHK 335
++ K+N + K + LW + N W ++L KK+++ P +K
Sbjct: 310 RSDKTNVKYPDFKHKETGEALW---MTNSPIWVLSKLPPLKKNQERPFMSNK 358
Score = 255 (94.8 bits), Expect = 7.0e-22, Sum P(2) = 7.0e-22
Identities = 43/71 (60%), Positives = 56/71 (78%)
Query: 288 LDDQTQKSNYVKKSKVDDLWKDLVENPDKWWDNRLDKKSEKGPDFKHKETGKPLWLNYSP 347
LD + K N +K+ K +++WK+LVENP KWWDNRLDK++ KGPDFKHKETG+ LW+ SP
Sbjct: 364 LDVEVPKGN-LKQLKREEIWKNLVENPSKWWDNRLDKRNPKGPDFKHKETGEALWIGDSP 422
Query: 348 AWVTSQLPPVK 358
W S+LPP+K
Sbjct: 423 TWALSKLPPLK 433
Score = 215 (80.7 bits), Expect = 1.7e-15, Sum P(2) = 1.7e-15
Identities = 40/69 (57%), Positives = 51/69 (73%)
Query: 294 KSNYVKKSKVDDL----WKDLVENPDKWWDNRLDKKSEKGPDFKHKETGKPLWLNYSPAW 349
K N +K +++ D+ WKDLV+NPDKW DNR DK + K PDFKHKETG+ LW+ SP W
Sbjct: 280 KGN-IKLNQLKDIGEESWKDLVQNPDKWLDNRSDKTNVKYPDFKHKETGEALWMTNSPIW 338
Query: 350 VTSQLPPVK 358
V S+LPP+K
Sbjct: 339 VLSKLPPLK 347
Score = 134 (52.2 bits), Expect = 6.2e-06, P = 6.2e-06
Identities = 32/100 (32%), Positives = 54/100 (54%)
Query: 164 SQKRMFFVSKKQEAATVDHSVKISSSKKDGDSALSSWRDLLDNPEQWRDYRSDKLKGLVK 223
+Q+R F +S K +D V + K+ + W++L++NP +W D R DK
Sbjct: 349 NQERPF-MSNKVSQLELDVEVPKGNLKQLKREEI--WKNLVENPSKWWDNRLDKRN---- 401
Query: 224 PRYPDFKRKDGTLPLWLNSAPDWVLSELEGVVFDKSKPVL 263
P+ PDFK K+ LW+ +P W LS+L + ++ +PV+
Sbjct: 402 PKGPDFKHKETGEALWIGDSPTWALSKLPPLKKNQERPVM 441
Score = 120 (47.3 bits), Expect = 0.00033, Sum P(2) = 0.00033
Identities = 31/89 (34%), Positives = 48/89 (53%)
Query: 277 KGVVFDKSKPVLDDQTQKSNYVKKSKVDDLWKDLVENPDKWWDNRLDKKS---EKG-PDF 332
K V K KP +++K + + + + WK L+ENP +W D+R +K + + G PDF
Sbjct: 192 KEVTSIKKKPA---RSKKVKVIDE-ETSNSWKHLIENPKEWLDHRGNKANGLVKPGHPDF 247
Query: 333 KHKETGKPLWLNYSPAWVTSQLPPVKSTV 361
K K G LWL+ +P W +L +K V
Sbjct: 248 KMKVGGLSLWLSTAPDWALLKLEELKFDV 276
Score = 39 (18.8 bits), Expect = 7.0e-22, Sum P(2) = 7.0e-22
Identities = 14/59 (23%), Positives = 23/59 (38%)
Query: 151 QVMVHSLNLIEPTSQKRMFFVSKKQEAATVDHSVKISSSKKDGDSALSSWRDLLDNPEQ 209
Q+ V S +I +K + VS K K + +S+W +L+ EQ
Sbjct: 34 QIRVFSATVISGGGKKPLAKVSVKPPLNVATEKESTPPKKIEYKPEISNWINLIGFVEQ 92
>TAIR|locus:2015353 [details] [associations]
symbol:OSB1 "Organellar Single-stranded" species:3702
"Arabidopsis thaliana" [GO:0003697 "single-stranded DNA binding"
evidence=IEA;IDA] [GO:0009507 "chloroplast" evidence=ISM]
[GO:0000002 "mitochondrial genome maintenance" evidence=IMP]
[GO:0005739 "mitochondrion" evidence=IDA] [GO:0045910 "negative
regulation of DNA recombination" evidence=IMP] [GO:0048046
"apoplast" evidence=IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=RCA] [GO:0043687 "post-translational
protein modification" evidence=RCA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=RCA]
InterPro:IPR000424 PROSITE:PS50935 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005739 GO:GO:0048046 GO:GO:0003697
GO:GO:0000002 InterPro:IPR012340 SUPFAM:SSF50249 EMBL:AC012463
EMBL:AC007519 GO:GO:0045910 EMBL:BT005269 EMBL:AK119114
IPI:IPI00522831 RefSeq:NP_175203.2 UniGene:At.38566
ProteinModelPortal:Q9SX99 STRING:Q9SX99 EnsemblPlants:AT1G47720.1
GeneID:841183 KEGG:ath:AT1G47720 TAIR:At1g47720 eggNOG:NOG311682
HOGENOM:HOG000092997 InParanoid:Q9SX99 OMA:SAVYHHA PhylomeDB:Q9SX99
ProtClustDB:CLSN2918339 Genevestigator:Q9SX99 Uniprot:Q9SX99
Length = 261
Score = 202 (76.2 bits), Expect = 6.9e-16, P = 6.9e-16
Identities = 68/233 (29%), Positives = 107/233 (45%)
Query: 55 VWPKPSEIPFQVKVANSVNLIGHVDAPVQFQTSSDGKHWAGTVI-VQHAAS--HSLWIPI 111
++ KP + + NSV+L+G VD +Q + + T++ V+ + S I +
Sbjct: 41 LFKKPLSTKLKFNLVNSVSLMGFVDRSIQVMNTGPDRFGVFTILRVKDPLNPNRSFRISL 100
Query: 112 LFEGDLAHIASSHLKKDDHVHIAGQLTA----DPPAIEG-QANVQVMVHSLNLIE-PTSQ 165
+A +HLK +DH+ ++G+L + G + QV V +N + P S
Sbjct: 101 RMWDAMARTCIAHLKLNDHILVSGRLESYSKSSSDVYSGLNLDYQVKVAEVNYVAAPPSH 160
Query: 166 KRMFFVSKKQEAATVDHSVKISSSKKDGDSALSSWRDLLDNPEQWRDYRSDKLKGLVKPR 225
+SK + T D I SKKD + W+ NP W D R +K P+
Sbjct: 161 VLDSQISKNPKTKTEDD---IEESKKD---EIYLWQVFFSNPYDWWDNRRNKKN----PK 210
Query: 226 YPDFKRKDGTLPLWLNS-APDWVLSELEGVVFDKSKPVLDDQ-TRK---SNYV 273
PDFK KD LWL S PDW+ LE +FD+ D++ TR+ S+Y+
Sbjct: 211 QPDFKHKDTGEALWLCSDLPDWITRRLE--LFDQKNRFYDEEKTRRDRLSDYI 261
Score = 180 (68.4 bits), Expect = 3.5e-12, P = 3.5e-12
Identities = 40/97 (41%), Positives = 59/97 (60%)
Query: 263 LDDQTRKS--NYVKKSKGVVFDKSKPVLDDQTQKSNYVKKSKVDD--LWKDLVENPDKWW 318
LD Q + + NYV V D S+ + +T+ + +++SK D+ LW+ NP WW
Sbjct: 142 LDYQVKVAEVNYVAAPPSHVLD-SQISKNPKTKTEDDIEESKKDEIYLWQVFFSNPYDWW 200
Query: 319 DNRLDKKSEKGPDFKHKETGKPLWL-NYSPAWVTSQL 354
DNR +KK+ K PDFKHK+TG+ LWL + P W+T +L
Sbjct: 201 DNRRNKKNPKQPDFKHKDTGEALWLCSDLPDWITRRL 237
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.315 0.131 0.399 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 364 353 0.00079 117 3 11 23 0.44 34
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 4
No. of states in DFA: 616 (65 KB)
Total size of DFA: 256 KB (2133 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 30.89u 0.09s 30.98t Elapsed: 00:00:01
Total cpu time: 30.89u 0.09s 30.98t Elapsed: 00:00:01
Start: Fri May 10 04:25:50 2013 End: Fri May 10 04:25:51 2013