BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 017902
         (364 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1QVC|A Chain A, Crystal Structure Analysis Of Single Stranded Dna Binding
           Protein (Ssb) From E.Coli
 pdb|1QVC|B Chain B, Crystal Structure Analysis Of Single Stranded Dna Binding
           Protein (Ssb) From E.Coli
 pdb|1QVC|C Chain C, Crystal Structure Analysis Of Single Stranded Dna Binding
           Protein (Ssb) From E.Coli
 pdb|1QVC|D Chain D, Crystal Structure Analysis Of Single Stranded Dna Binding
           Protein (Ssb) From E.Coli
          Length = 145

 Score = 32.7 bits (73), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 13/30 (43%), Positives = 19/30 (63%)

Query: 108 WIPILFEGDLAHIASSHLKKDDHVHIAGQL 137
           W  ++  G LA +AS +L+K   V+I GQL
Sbjct: 54  WHRVVLFGKLAEVASEYLRKGSQVYIEGQL 83


>pdb|1KAW|A Chain A, Structure Of Single Stranded Dna Binding Protein (Ssb)
 pdb|1KAW|B Chain B, Structure Of Single Stranded Dna Binding Protein (Ssb)
 pdb|1KAW|C Chain C, Structure Of Single Stranded Dna Binding Protein (Ssb)
 pdb|1KAW|D Chain D, Structure Of Single Stranded Dna Binding Protein (Ssb)
          Length = 135

 Score = 32.3 bits (72), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 13/30 (43%), Positives = 19/30 (63%)

Query: 108 WIPILFEGDLAHIASSHLKKDDHVHIAGQL 137
           W  ++  G LA +AS +L+K   V+I GQL
Sbjct: 54  WHRVVLFGKLAEVASEYLRKGSQVYIEGQL 83


>pdb|1EQQ|A Chain A, Single Stranded Dna Binding Protein And Ssdna Complex
 pdb|1EQQ|B Chain B, Single Stranded Dna Binding Protein And Ssdna Complex
 pdb|1EQQ|C Chain C, Single Stranded Dna Binding Protein And Ssdna Complex
 pdb|1EQQ|D Chain D, Single Stranded Dna Binding Protein And Ssdna Complex
          Length = 178

 Score = 32.3 bits (72), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 13/30 (43%), Positives = 19/30 (63%)

Query: 108 WIPILFEGDLAHIASSHLKKDDHVHIAGQL 137
           W  ++  G LA +AS +L+K   V+I GQL
Sbjct: 55  WHRVVLFGKLAEVASEYLRKGSQVYIEGQL 84


>pdb|3CNF|A Chain A, 3.88 Angstrom Structure Of Cytoplasmic Polyhedrosis Virus
           By Cryo-Electron Microscopy
 pdb|3CNF|B Chain B, 3.88 Angstrom Structure Of Cytoplasmic Polyhedrosis Virus
           By Cryo-Electron Microscopy
 pdb|3IZX|B Chain B, 3.1 Angstrom Cryoem Structure Of Cytoplasmic Polyhedrosis
           Virus
 pdb|3IZX|C Chain C, 3.1 Angstrom Cryoem Structure Of Cytoplasmic Polyhedrosis
           Virus
          Length = 1333

 Score = 30.8 bits (68), Expect = 1.1,   Method: Composition-based stats.
 Identities = 27/72 (37%), Positives = 37/72 (51%), Gaps = 9/72 (12%)

Query: 129 DHVHIAGQL---TADPPAIEG---QANVQVMVHSLNLIEPTSQKRMF--FVSKKQEAATV 180
           DH HI   L    A+ P +EG   Q N    V S N+I P S+KR F   + + Q AA +
Sbjct: 404 DHDHIIRCLMLAAANYPRLEGIIVQINTG-YVASANVIRPVSEKRYFPENLEQNQSAARL 462

Query: 181 DHSVKISSSKKD 192
             +VK  +S+ D
Sbjct: 463 VSAVKARASEAD 474


>pdb|3IZ3|B Chain B, Cryoem Structure Of Cytoplasmic Polyhedrosis Virus
 pdb|3IZ3|C Chain C, Cryoem Structure Of Cytoplasmic Polyhedrosis Virus
 pdb|3J17|B Chain B, Structure Of A Transcribing Cypovirus By Cryo-Electron
           Microscopy
 pdb|3J17|C Chain C, Structure Of A Transcribing Cypovirus By Cryo-Electron
           Microscopy
          Length = 1333

 Score = 30.8 bits (68), Expect = 1.1,   Method: Composition-based stats.
 Identities = 27/72 (37%), Positives = 37/72 (51%), Gaps = 9/72 (12%)

Query: 129 DHVHIAGQL---TADPPAIEG---QANVQVMVHSLNLIEPTSQKRMF--FVSKKQEAATV 180
           DH HI   L    A+ P +EG   Q N    V S N+I P S+KR F   + + Q AA +
Sbjct: 404 DHDHIIRCLMLAAANYPRLEGIIVQINTG-YVASANVIRPVSEKRYFPENLEQNQSAARL 462

Query: 181 DHSVKISSSKKD 192
             +VK  +S+ D
Sbjct: 463 VSAVKARASEAD 474


>pdb|1EYG|A Chain A, Crystal Structure Of Chymotryptic Fragment Of E. Coli Ssb
           Bound To Two 35-Mer Single Strand Dnas
 pdb|1EYG|B Chain B, Crystal Structure Of Chymotryptic Fragment Of E. Coli Ssb
           Bound To Two 35-Mer Single Strand Dnas
 pdb|1EYG|C Chain C, Crystal Structure Of Chymotryptic Fragment Of E. Coli Ssb
           Bound To Two 35-Mer Single Strand Dnas
 pdb|1EYG|D Chain D, Crystal Structure Of Chymotryptic Fragment Of E. Coli Ssb
           Bound To Two 35-Mer Single Strand Dnas
          Length = 116

 Score = 30.4 bits (67), Expect = 1.7,   Method: Composition-based stats.
 Identities = 13/30 (43%), Positives = 19/30 (63%)

Query: 108 WIPILFEGDLAHIASSHLKKDDHVHIAGQL 137
           W  ++  G LA +AS +L+K   V+I GQL
Sbjct: 55  WHRVVLFGKLAEVASEYLRKGSQVYIEGQL 84


>pdb|1SRU|A Chain A, Crystal Structure Of Full Length E. Coli Ssb Protein
 pdb|1SRU|B Chain B, Crystal Structure Of Full Length E. Coli Ssb Protein
 pdb|1SRU|C Chain C, Crystal Structure Of Full Length E. Coli Ssb Protein
 pdb|1SRU|D Chain D, Crystal Structure Of Full Length E. Coli Ssb Protein
          Length = 113

 Score = 30.0 bits (66), Expect = 1.9,   Method: Composition-based stats.
 Identities = 13/30 (43%), Positives = 19/30 (63%)

Query: 108 WIPILFEGDLAHIASSHLKKDDHVHIAGQL 137
           W  ++  G LA +AS +L+K   V+I GQL
Sbjct: 55  WHRVVLFGKLAEVASEYLRKGSQVYIEGQL 84


>pdb|2H32|B Chain B, Crystal Structure Of The Pre-B Cell Receptor
          Length = 121

 Score = 29.6 bits (65), Expect = 2.7,   Method: Composition-based stats.
 Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 4/75 (5%)

Query: 141 PPAIEGQANVQVMVHSLNLIEPTSQKRMFFVSKKQEAATVDHSVKISSSKKDGDSALSSW 200
           P + E QAN   +V  +N   P     +  V+ K +   +   V++++  K  ++  ++ 
Sbjct: 29  PSSEELQANKATLVCLMNDFYPG----ILTVTWKADGTPITQGVEMTTPSKQSNNKYAAS 84

Query: 201 RDLLDNPEQWRDYRS 215
             L   PEQWR  RS
Sbjct: 85  SYLSLTPEQWRSRRS 99


>pdb|2H3N|B Chain B, Crystal Structure Of A Surrogate Light Chain (Lambda5 And
           Vpreb) Homodimer
 pdb|2H3N|D Chain D, Crystal Structure Of A Surrogate Light Chain (Lambda5 And
           Vpreb) Homodimer
          Length = 117

 Score = 29.6 bits (65), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 5/80 (6%)

Query: 137 LTADPPAIEG-QANVQVMVHSLNLIEPTSQKRMFFVSKKQEAATVDHSVKISSSKKDGDS 195
           +T  PP+ E  QAN   +V  +N   P     +  V+ K +   +   V++++  K  ++
Sbjct: 23  VTLFPPSSEELQANKATLVCLMNDFYP----GILTVTWKADGTPITQGVEMTTPSKQSNN 78

Query: 196 ALSSWRDLLDNPEQWRDYRS 215
             ++   L   PEQWR  RS
Sbjct: 79  KYAASSYLSLTPEQWRSRRS 98


>pdb|4B56|A Chain A, Structure Of Ectonucleotide
           Pyrophosphatase-Phosphodiesterase-1 (Npp1)
 pdb|4B56|B Chain B, Structure Of Ectonucleotide
           Pyrophosphatase-Phosphodiesterase-1 (Npp1)
          Length = 820

 Score = 28.1 bits (61), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 1/42 (2%)

Query: 319 DNRL-DKKSEKGPDFKHKETGKPLWLNYSPAWVTSQLPPVKS 359
           DN++ D K       K KE   PLW    P WVT+    VKS
Sbjct: 172 DNKMYDPKMNASFSLKSKEKFNPLWYKGQPIWVTANHQEVKS 213


>pdb|4GTX|A Chain A, Crystal Structure Of Mouse Enpp1 In Complex With Tmp
 pdb|4GTX|B Chain B, Crystal Structure Of Mouse Enpp1 In Complex With Tmp
 pdb|4GTY|A Chain A, Crystal Structure Of Mouse Enpp1 In Complex With Gmp
 pdb|4GTY|B Chain B, Crystal Structure Of Mouse Enpp1 In Complex With Gmp
 pdb|4GTZ|A Chain A, Crystal Structure Of Mouse Enpp1 In Complex With Cmp
 pdb|4GTZ|B Chain B, Crystal Structure Of Mouse Enpp1 In Complex With Cmp
          Length = 823

 Score = 28.1 bits (61), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 1/42 (2%)

Query: 319 DNRL-DKKSEKGPDFKHKETGKPLWLNYSPAWVTSQLPPVKS 359
           DN++ D K       K KE   PLW    P WVT+    VKS
Sbjct: 176 DNKMYDPKMNASFSLKSKEKFNPLWYKGQPIWVTANHQEVKS 217


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.315    0.131    0.399 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,203,061
Number of Sequences: 62578
Number of extensions: 472449
Number of successful extensions: 1266
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1255
Number of HSP's gapped (non-prelim): 21
length of query: 364
length of database: 14,973,337
effective HSP length: 100
effective length of query: 264
effective length of database: 8,715,537
effective search space: 2300901768
effective search space used: 2300901768
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)