Query 017902
Match_columns 364
No_of_seqs 165 out of 1111
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 06:45:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017902.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017902hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3koj_A Uncharacterized protein 99.9 7.4E-26 2.5E-30 189.9 12.5 91 68-158 10-107 (108)
2 3vdy_A SSB, single-stranded DN 99.9 1.5E-25 5.1E-30 187.7 14.0 100 67-166 3-112 (116)
3 2vw9_A Single-stranded DNA bin 99.9 6.8E-25 2.3E-29 189.1 11.6 99 68-166 1-111 (134)
4 3ull_A DNA binding protein; DN 99.9 7.8E-25 2.7E-29 187.7 10.9 100 67-166 12-130 (132)
5 3ulp_A Single-strand binding p 99.9 1.9E-24 6.5E-29 183.3 13.0 99 67-165 4-122 (124)
6 1z9f_A Single-strand binding p 99.9 1.9E-24 6.4E-29 190.8 13.2 100 67-166 14-125 (153)
7 1qvc_A Single stranded DNA bin 99.9 3.2E-24 1.1E-28 187.1 12.5 100 67-166 3-118 (145)
8 1txy_A Primosomal replication 99.9 1.4E-24 4.7E-29 179.5 8.9 95 68-163 1-103 (104)
9 3tqy_A Single-stranded DNA-bin 99.9 9.1E-24 3.1E-28 187.0 12.8 100 67-166 6-118 (158)
10 3lgj_A Single-stranded DNA-bin 99.9 1.3E-23 4.4E-28 188.2 13.8 100 67-166 21-138 (169)
11 1v1q_A Primosomal replication 99.9 3.9E-24 1.3E-28 185.7 9.9 98 68-166 18-123 (134)
12 4gs3_A Single-stranded DNA-bin 99.9 3.4E-23 1.2E-27 173.8 9.8 91 69-161 11-106 (107)
13 3afp_A Single-stranded DNA-bin 99.9 5.4E-23 1.9E-27 183.7 11.5 97 68-164 3-117 (168)
14 4dam_A Single-stranded DNA-bin 99.9 4.1E-23 1.4E-27 177.4 9.6 92 68-160 14-118 (128)
15 3pgz_A Single-stranded DNA-bin 99.9 8.6E-23 2.9E-27 186.8 12.0 99 68-166 25-141 (193)
16 1eqq_A Single stranded DNA bin 99.9 1.2E-23 4E-28 189.8 5.8 99 67-165 4-118 (178)
17 3fhw_A Primosomal replication 99.9 1.3E-22 4.4E-27 172.1 10.8 94 69-166 1-102 (115)
18 3k7u_C MP18 RNA editing comple 99.9 2.9E-22 1E-26 176.4 11.7 96 68-165 5-119 (148)
19 3k8a_A Putative primosomal rep 99.9 2.3E-22 7.7E-27 167.2 9.7 88 69-161 7-102 (103)
20 3eiv_A Single-stranded DNA-bin 99.9 1.4E-21 4.6E-26 179.6 14.4 92 69-160 4-109 (199)
21 2fxq_A Single-strand binding p 99.9 6.4E-22 2.2E-26 186.6 12.5 99 67-166 126-233 (264)
22 3k81_C MP18 RNA editing comple 99.9 5.7E-22 1.9E-26 177.4 11.4 99 66-166 19-136 (164)
23 1se8_A Single-strand binding p 99.8 4E-21 1.4E-25 185.5 13.4 99 67-165 3-114 (301)
24 2fxq_A Single-strand binding p 99.8 2.4E-21 8.2E-26 182.7 11.0 98 68-165 4-112 (264)
25 1se8_A Single-strand binding p 99.8 1.2E-20 4.1E-25 182.2 12.2 99 67-166 127-237 (301)
26 3en2_A Probable primosomal rep 99.8 5.5E-20 1.9E-24 152.8 7.5 76 69-145 2-85 (101)
27 4dni_A Fusion protein of RNA-e 99.8 4.9E-19 1.7E-23 168.2 10.9 84 69-155 146-245 (257)
28 4dni_A Fusion protein of RNA-e 99.7 1.8E-17 6.1E-22 157.4 10.1 92 66-161 27-128 (257)
29 3stb_C RNA-editing complex pro 99.7 3.8E-16 1.3E-20 137.7 10.4 80 67-148 42-129 (148)
30 4dka_C RNA-editing complex pro 97.4 0.0004 1.4E-08 57.9 8.0 73 70-144 4-81 (105)
31 2k50_A Replication factor A re 96.2 0.027 9.3E-07 45.8 9.2 71 70-145 17-91 (115)
32 3e0e_A Replication protein A; 95.4 0.041 1.4E-06 44.2 7.1 78 70-160 12-93 (97)
33 3dm3_A Replication factor A; p 95.2 0.061 2.1E-06 44.1 7.7 80 70-161 15-98 (105)
34 1o7i_A SSB, SSO2364, single st 94.1 0.17 5.8E-06 41.7 7.8 64 69-140 12-79 (119)
35 1ynx_A Replication factor-A pr 92.4 0.23 7.9E-06 40.7 6.1 64 69-136 14-80 (114)
36 2k75_A Uncharacterized protein 91.8 0.43 1.5E-05 38.9 6.9 61 69-140 13-76 (106)
37 3f2b_A DNA-directed DNA polyme 88.8 2.7 9.3E-05 46.8 12.1 86 67-161 15-102 (1041)
38 2hql_A Hypothetical protein Mg 88.8 5.9 0.0002 32.4 11.0 71 67-141 6-80 (110)
39 1eov_A ASPRS, aspartyl-tRNA sy 86.2 6.3 0.00022 40.0 12.2 86 70-164 37-131 (487)
40 4gop_B Putative uncharacterize 86.1 2.9 0.0001 34.9 8.2 86 61-162 28-116 (136)
41 3kdf_D Replication protein A 3 84.1 4.4 0.00015 33.7 8.3 87 61-163 23-112 (132)
42 2hpi_A DNA polymerase III alph 83.8 1.8 6E-05 49.0 7.3 79 71-161 1044-1122(1220)
43 1jmc_A Protein (replication pr 78.6 5.3 0.00018 35.9 7.4 63 69-135 18-83 (246)
44 4gop_C Putative uncharacterize 77.4 3.5 0.00012 40.8 6.3 64 69-136 13-79 (444)
45 3kf6_A Protein STN1; OB fold, 76.2 21 0.00072 31.2 10.3 87 64-165 42-131 (159)
46 3m4p_A Ehasnrs, asparaginyl-tR 75.8 9 0.00031 38.7 8.9 87 69-164 30-123 (456)
47 3bju_A Lysyl-tRNA synthetase; 74.9 12 0.00041 38.4 9.6 79 71-163 57-141 (521)
48 1wyd_A Hypothetical aspartyl-t 74.8 13 0.00043 37.2 9.6 80 70-163 17-98 (429)
49 3nem_A Aspartyl-tRNA synthetas 74.7 23 0.00078 35.5 11.4 82 70-164 17-102 (438)
50 1x54_A Asparaginyl-tRNA synthe 74.4 15 0.0005 36.7 9.9 81 70-163 17-101 (434)
51 2pi2_A Replication protein A 3 73.9 8.5 0.00029 35.8 7.6 55 105-165 97-154 (270)
52 2xgt_A Asparaginyl-tRNA synthe 73.0 10 0.00034 37.9 8.3 82 71-162 13-96 (435)
53 3kf8_A Protein STN1; OB fold; 72.3 15 0.00051 34.1 8.7 99 67-165 83-187 (220)
54 1n9w_A Aspartyl-tRNA synthetas 72.2 15 0.00052 36.5 9.4 74 70-163 14-88 (422)
55 3i7f_A Aspartyl-tRNA synthetas 70.0 24 0.00083 36.6 10.6 84 70-164 63-154 (548)
56 1wjj_A Hypothetical protein F2 69.5 7.5 0.00026 33.7 5.7 61 69-137 26-99 (145)
57 3a74_A Lysyl-tRNA synthetase; 65.5 31 0.0011 35.1 10.2 78 71-163 58-139 (493)
58 1jmc_A Protein (replication pr 63.1 29 0.001 31.0 8.6 67 71-142 140-210 (246)
59 1l0w_A Aspartyl-tRNA synthetas 62.6 23 0.00079 36.8 8.7 83 71-164 18-104 (580)
60 3au7_A TIAS, putative uncharac 62.5 48 0.0016 33.2 10.7 78 67-162 282-361 (402)
61 1c0a_A Aspartyl tRNA synthetas 62.1 31 0.0011 35.9 9.6 84 71-164 17-106 (585)
62 2kbn_A Conserved protein; nucl 61.6 37 0.0013 27.3 8.1 62 69-140 15-77 (109)
63 1e1o_A Lysyl-tRNA synthetase, 59.7 63 0.0021 33.0 11.2 78 71-163 66-148 (504)
64 4hik_A Protection of telomeres 57.4 7.8 0.00027 33.5 3.5 27 108-134 66-92 (143)
65 4ex5_A Lysine--tRNA ligase; st 56.3 52 0.0018 34.0 10.0 78 71-163 88-169 (529)
66 2vl6_A SSO MCM N-TER, minichro 54.2 30 0.001 31.8 7.2 52 105-160 209-265 (268)
67 1xjv_A Protection of telomeres 43.8 27 0.00091 32.7 5.1 73 69-145 15-87 (294)
68 1ltl_A DNA replication initiat 33.5 51 0.0018 30.6 5.2 50 106-160 197-247 (279)
69 4hsp_A Hypothetical protein; P 33.3 34 0.0012 29.9 3.7 85 67-160 51-145 (150)
70 4ah6_A Aspartate--tRNA ligase, 30.5 1.6E+02 0.0056 30.9 8.9 82 70-164 25-114 (617)
71 1qzg_A Protection of telomeres 24.4 85 0.0029 28.3 4.8 75 70-145 43-120 (187)
72 4gop_C Putative uncharacterize 24.2 1.7E+02 0.0057 28.7 7.4 69 71-144 135-211 (444)
73 3mal_A Stromal cell-derived fa 23.6 15 0.00052 33.0 -0.3 28 329-356 143-172 (199)
74 4eh1_A Flavohemoprotein; struc 23.2 1.6E+02 0.0054 25.4 6.3 28 115-142 83-110 (243)
75 1gm5_A RECG; helicase, replica 22.2 55 0.0019 35.0 3.6 62 70-139 166-229 (780)
76 1t9f_A Protein 1D10; structura 22.1 18 0.00061 32.1 -0.1 26 331-356 133-160 (187)
77 3ebe_A Protein MCM10 homolog; 21.4 1E+02 0.0034 27.9 4.7 63 71-135 57-119 (200)
No 1
>3koj_A Uncharacterized protein YCF41; single-strand binding protein family, PF00436, SNR59A, NESG, structural genomics, PSI-2; 1.90A {Synechococcus elongatus pcc 6301}
Probab=99.93 E-value=7.4e-26 Score=189.90 Aligned_cols=91 Identities=16% Similarity=0.161 Sum_probs=79.9
Q ss_pred ccceEEEEEEeCCCceEEECCCC-cEEEEEEEEEcC---CCCCeeEEEEEechHHHHHHhhcCCCCeEEEEEEeeeCCCC
Q 017902 68 VANSVNLIGHVDAPVQFQTSSDG-KHWAGTVIVQHA---ASHSLWIPILFEGDLAHIASSHLKKDDHVHIAGQLTADPPA 143 (364)
Q Consensus 68 l~NsV~LIGrLg~DPElr~T~~G-k~va~f~LAv~~---~~~T~wI~Vv~wGkLAE~aaqhLkKGD~V~VsGRL~s~sye 143 (364)
-||+|+|||||++|||+|+|++| ..+|.|+||+++ .++++||+|++||++||.|++||+|||+|+|+|+|++++|+
T Consensus 10 ~~~~v~LiGrL~~DPelR~t~~g~~~va~f~lAv~~~~~~~~t~fi~vv~wgk~AE~~~~yl~KG~~V~VeGrL~~r~y~ 89 (108)
T 3koj_A 10 HMNSCILQATVVEAPQLRYAQDNQTPVAEMVVQFPGLSSKDAPARLKVVGWGAVAQELQDRCRLNDEVVLEGRLRINSLL 89 (108)
T ss_dssp SCEEEEEEEEEEEEEEEEECTTSSSEEEEEEEEECC-----CCEEEEEEEETHHHHHHHHHCCTTCEEEEEEEEEEEC--
T ss_pred ccceEEEEEEECCCCEEEEeCCCCEEEEEEEEEECCcccCCCcEEEEEEEEhHHHHHHHHhCCCCCEEEEEEEEEeeeEE
Confidence 48999999999999999999998 999999999984 24689999999999999999999999999999999999999
Q ss_pred cC---CeEEEEEEEeeEE
Q 017902 144 IE---GQANVQVMVHSLN 158 (364)
Q Consensus 144 dk---~qt~~eVvVe~v~ 158 (364)
++ .++.+||+|++|.
T Consensus 90 ~kdG~kr~~tEVva~~i~ 107 (108)
T 3koj_A 90 KPDGNREKQTELTVTRVH 107 (108)
T ss_dssp ------CCEEEEEEEEEE
T ss_pred CCCCCEEEEEEEEEEEEE
Confidence 75 5778999999874
No 2
>3vdy_A SSB, single-stranded DNA-binding protein SSBB; OB fold; 2.80A {Bacillus subtilis}
Probab=99.93 E-value=1.5e-25 Score=187.72 Aligned_cols=100 Identities=14% Similarity=0.221 Sum_probs=87.8
Q ss_pred cccceEEEEEEeCCCceEEECCCCcEEEEEEEEEcCC-------CCCeeEEEEEechHHHHHHhhcCCCCeEEEEEEeee
Q 017902 67 KVANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAA-------SHSLWIPILFEGDLAHIASSHLKKDDHVHIAGQLTA 139 (364)
Q Consensus 67 ~l~NsV~LIGrLg~DPElr~T~~Gk~va~f~LAv~~~-------~~T~wI~Vv~wGkLAE~aaqhLkKGD~V~VsGRL~s 139 (364)
.|||+|+|+|||++|||++++++|..+|.|+||+++. .+++||+|++||++||.+++||+|||+|+|+|+|++
T Consensus 3 ~mmN~v~l~G~l~~dpe~r~t~~G~~v~~f~la~~~~~~~~~g~~~t~~~~v~~wg~~Ae~~~~~l~KG~~V~V~G~l~~ 82 (116)
T 3vdy_A 3 HMFNQVMLVGRLTKDPDLRYTSAGAAVAHVTLAVNRSFKNASGEIEADYVNCTLWRKTAENTALYCQKGSLVGVSGRIQT 82 (116)
T ss_dssp CCCCCEEEEEEESSCCEEEECTTSCEEEEEEEEEECSSCCSSSCCCEEEEEEEEEHHHHHHHHHHCCTTCEEEEEEEEEE
T ss_pred ceEeEEEEEEEEccCcEEEECCCCCEEEEEEEEEeccccCCCCccccEEEEEEEECHHHHHHHHhCCCCCEEEEEEEEEe
Confidence 5899999999999999999999999999999999762 257999999999999999999999999999999999
Q ss_pred CCCCcC---CeEEEEEEEeeEEeccCCCcc
Q 017902 140 DPPAIE---GQANVQVMVHSLNLIEPTSQK 166 (364)
Q Consensus 140 ~syedk---~qt~~eVvVe~v~FV~~k~~~ 166 (364)
++|+++ .++.++|+|++|+||+++...
T Consensus 83 ~~~~d~dG~~~~~~ev~a~~i~~l~~~~~~ 112 (116)
T 3vdy_A 83 RSYENEEGVNVYVTEVLADTVRFMDPKPRE 112 (116)
T ss_dssp EEEC----CCEEEEEEEEEEEEECC-----
T ss_pred eEEECCCCCEEEEEEEEEEEEEEccCCCcc
Confidence 999865 577899999999999876543
No 3
>2vw9_A Single-stranded DNA binding protein; DNA replication, single-stranded DNA, single-stranded DNA binding protein, oligonucleotide/oligosaccharide binding fold, OB-fold; 2.30A {Helicobacter pylori}
Probab=99.92 E-value=6.8e-25 Score=189.07 Aligned_cols=99 Identities=21% Similarity=0.267 Sum_probs=88.7
Q ss_pred ccceEEEEEEeCCCceEEECCCCcEEEEEEEEEcCC------C---CCeeEEEEEechHHHHHHhhcCCCCeEEEEEEee
Q 017902 68 VANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAA------S---HSLWIPILFEGDLAHIASSHLKKDDHVHIAGQLT 138 (364)
Q Consensus 68 l~NsV~LIGrLg~DPElr~T~~Gk~va~f~LAv~~~------~---~T~wI~Vv~wGkLAE~aaqhLkKGD~V~VsGRL~ 138 (364)
|||+|+|||||++|||+++|++|..+|.|+||+++. + +++||+|++||++||.|++||+|||+|+|+|+|+
T Consensus 1 mmN~V~L~GrL~~dPelr~t~~G~~v~~f~lA~~~~~~~~~G~~~~~t~~~~v~~wg~~Ae~~~~~l~KG~~V~V~G~L~ 80 (134)
T 2vw9_A 1 MFNKVIMVGRLTRNVELKYLPSGSAAATIGLATSRRFKKQDGTLGEEVCFIDARLFGRTAEIANQYLSKGSSVLIEGRLT 80 (134)
T ss_dssp CCCCEEEEEEESSCCEEEECTTSCEEEEEEEEEEEEEECSSSCEEEEEEEEEEEEEHHHHHHHHHHCCTTCEEEEEEEEE
T ss_pred CeeEEEEEEEECCCCEEEECCCCCEEEEEEEEEeCCeECCCCCCccccEEEEEEEEcHHHHHHHHhCCCCCEEEEEEEEE
Confidence 689999999999999999999999999999999751 1 5799999999999999999999999999999999
Q ss_pred eCCCCcC---CeEEEEEEEeeEEeccCCCcc
Q 017902 139 ADPPAIE---GQANVQVMVHSLNLIEPTSQK 166 (364)
Q Consensus 139 s~syedk---~qt~~eVvVe~v~FV~~k~~~ 166 (364)
+++|+++ .++.++|+|++|.||+.+...
T Consensus 81 ~~~~~dkdG~~r~~~ev~a~~i~~l~~~~~~ 111 (134)
T 2vw9_A 81 YESWMDQTGKKNSRHTITADSLQFMDKKSDN 111 (134)
T ss_dssp EEEEECTTSCEEEEEEEEEEEEEECCCC---
T ss_pred eeeEECCCCCEEEEEEEEEEEEEEccCCccc
Confidence 9999865 466789999999999876544
No 4
>3ull_A DNA binding protein; DNA replication, mitochondrion, transit peptide; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 PDB: 1s3o_A* 2dud_A
Probab=99.91 E-value=7.8e-25 Score=187.74 Aligned_cols=100 Identities=12% Similarity=0.214 Sum_probs=86.5
Q ss_pred cccceEEEEEEeCCCceEEECCCCcEEEEEEEEEcCC---------------CCCeeEEEEEec-hHHHHHHhhcCCCCe
Q 017902 67 KVANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAA---------------SHSLWIPILFEG-DLAHIASSHLKKDDH 130 (364)
Q Consensus 67 ~l~NsV~LIGrLg~DPElr~T~~Gk~va~f~LAv~~~---------------~~T~wI~Vv~wG-kLAE~aaqhLkKGD~ 130 (364)
+.+|+|+||||||+|||++++++|..+|.|+||+++. +.++||+|++|| ++|+.|++||+||++
T Consensus 12 ~~mN~V~L~GrL~~dPelr~t~~G~~v~~f~lA~~~~~~~~~g~~~~~g~~~~~t~w~~v~~wg~~~Ae~~~~~l~KG~~ 91 (132)
T 3ull_A 12 RSLNRVHLLGRVGQDPVLRQVEGKNPVTIFSLATNEMWRSGDSEVYQLGDVSQKTTWHRISVFRPGLRDVAYQYVKKGSR 91 (132)
T ss_dssp CCEEEEEEEEEECSCCEEECCTTSCCEEEEEEEEEEEECC---------CCEEEEEEEEEEECSTTHHHHHHHHCCTTCE
T ss_pred hcCcEEEEEEEECCCCEEEECCCCCEEEEEEEEEecceeccccccccCCceecceEEEEEEEEchHHHHHHHhhCCCCCE
Confidence 5799999999999999999999999999999999752 147999999999 599999999999999
Q ss_pred EEEEEEeeeCCCCcC-C--eEEEEEEEeeEEeccCCCcc
Q 017902 131 VHIAGQLTADPPAIE-G--QANVQVMVHSLNLIEPTSQK 166 (364)
Q Consensus 131 V~VsGRL~s~syedk-~--qt~~eVvVe~v~FV~~k~~~ 166 (364)
|+|+|+|++++|+++ | ++.++|+|++|.||++++.+
T Consensus 92 V~V~G~L~~~~~~d~dG~~r~~~ev~a~~i~~l~~~~k~ 130 (132)
T 3ull_A 92 IYLEGKIDYGEYMDKNNVRRQATTIIADNIIFLSDQTKE 130 (132)
T ss_dssp EEEEEEEECCCEESSSSEECCCEEEEEEEEECC------
T ss_pred EEEEEEEEeeEEECCCCCEEEEEEEEEEEEEEccCCCcc
Confidence 999999999999765 4 56889999999999887654
No 5
>3ulp_A Single-strand binding protein; OB-fold, DNA binding, single-stranded DNA, apicoplast, DNA B protein-DNA complex; HET: DNA; 2.10A {Plasmodium falciparum}
Probab=99.91 E-value=1.9e-24 Score=183.33 Aligned_cols=99 Identities=17% Similarity=0.284 Sum_probs=87.6
Q ss_pred cccceEEEEEEeCCCceEEECCCCcEEEEEEEEEcCC----------CCCeeEEEEEec-hHHHHHHhhcCCCCeEEEEE
Q 017902 67 KVANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAA----------SHSLWIPILFEG-DLAHIASSHLKKDDHVHIAG 135 (364)
Q Consensus 67 ~l~NsV~LIGrLg~DPElr~T~~Gk~va~f~LAv~~~----------~~T~wI~Vv~wG-kLAE~aaqhLkKGD~V~VsG 135 (364)
+++|+|+|+|||++|||++++++|+.+|.|+||+++. ++++||+|++|| ++|+.+++||+||++|+|+|
T Consensus 4 ~~~N~v~l~Grl~~dpelr~t~~G~~v~~f~lA~~~~~~~~~~G~~~~~t~~~~v~~wg~~~Ae~~~~~l~KG~~V~V~G 83 (124)
T 3ulp_A 4 KSLNKIMLIGRVGCEPDIKILNGGDKVATFSLATNEFWRDRNTNELKSKTDWHRIVVYDQNIVDLIDKYLRKGRRVYVQG 83 (124)
T ss_dssp CCEEEEEEEEEECSCCEEEECTTSCEEEEEEEEEEEEEECTTTCCEEEEEEEEEEEECCHHHHHHHHHHCCTTCEEEEEE
T ss_pred ccceEEEEEEEECCCcEEEECCCCCEEEEEEEEEccceecccCCcEecccEEEEEEEEEchHHHHHHhhcCCCCEEEEEE
Confidence 6899999999999999999999999999999999751 157999999999 89999999999999999999
Q ss_pred EeeeCCCCc---C--CeEEEEEEEe----eEEeccCCCc
Q 017902 136 QLTADPPAI---E--GQANVQVMVH----SLNLIEPTSQ 165 (364)
Q Consensus 136 RL~s~syed---k--~qt~~eVvVe----~v~FV~~k~~ 165 (364)
+|++++|++ + .++.++|+|+ +|.||++++.
T Consensus 84 ~L~~~~~~d~~~dG~~~~~~ev~a~~~g~~i~~l~~k~~ 122 (124)
T 3ulp_A 84 SLHTRKWHTNDMNSQPKQITEIILSYNKGDLIFLDDKRN 122 (124)
T ss_dssp EEEEEEECC----CCCEEEEEEEECTTTCEEEECC----
T ss_pred EEEeEEEeCCCCCCCEEEEEEEEEEcCCCcEEEecCcCC
Confidence 999999985 4 5778999998 9999987654
No 6
>1z9f_A Single-strand binding protein; TM0604, single stranded DNA-binding protein, structural GENO joint center for structural genomics, JCSG; 2.30A {Thermotoga maritima}
Probab=99.91 E-value=1.9e-24 Score=190.78 Aligned_cols=100 Identities=16% Similarity=0.202 Sum_probs=82.8
Q ss_pred cccceEEEEEEeCCCceEEECCCCcEEEEEEEEEcC-C-------C-CCeeEEEEEechHHHHHHhhcCCCCeEEEEEEe
Q 017902 67 KVANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHA-A-------S-HSLWIPILFEGDLAHIASSHLKKDDHVHIAGQL 137 (364)
Q Consensus 67 ~l~NsV~LIGrLg~DPElr~T~~Gk~va~f~LAv~~-~-------~-~T~wI~Vv~wGkLAE~aaqhLkKGD~V~VsGRL 137 (364)
-++|.|+||||||+|||+|++++|+.+|.|+||+++ . . +++||+|++||++|+.|++||+||++|+|+|+|
T Consensus 14 ~~~N~V~LiGrL~~DPelr~t~~G~~va~f~lAv~~r~~~~~~Ge~~~t~~~~v~~wg~~Ae~~~~~l~KG~~V~VeGrL 93 (153)
T 1z9f_A 14 SFFNKIILIGRLVRDPEERYTLSGTPVTTFTIAVDRVPRKNAPDDAQTTDFFRIVTFGRLAEFARTYLTKGRLVLVEGEM 93 (153)
T ss_dssp SCCCCEEEEEEESSCCEEEECC--CEEEEEEEEEEC-----------CEEEEEEEEEHHHHHHHHHHCCTTCEEEEEEEE
T ss_pred cceeEEEEEEEECCCCEEEECCCCCEEEEEEEEEcCCccccCCCCEeeeEEEEEEEECHHHHHHHhhCCCCCEEEEEEEE
Confidence 369999999999999999999999999999999986 3 1 289999999999999999999999999999999
Q ss_pred eeCCCCcC---CeEEEEEEEeeEEeccCCCcc
Q 017902 138 TADPPAIE---GQANVQVMVHSLNLIEPTSQK 166 (364)
Q Consensus 138 ~s~syedk---~qt~~eVvVe~v~FV~~k~~~ 166 (364)
++++|+++ .++.++|+|++|.||+.+...
T Consensus 94 ~~~~~~dkdG~~r~~~eV~a~~i~~l~~~~~~ 125 (153)
T 1z9f_A 94 RMRRWETPTGEKRVSPEVVANVVRFMDRKPAE 125 (153)
T ss_dssp EEEC-------CCCEEEEEEEEEEECC-----
T ss_pred EeceEECCCCCEEEEEEEEEEEEEEccCCCcc
Confidence 99999865 577899999999999876654
No 7
>1qvc_A Single stranded DNA binding protein monomer; beta-barrel; 2.20A {Escherichia coli} SCOP: b.40.4.3 PDB: 1kaw_A 1eyg_A 1sru_A
Probab=99.91 E-value=3.2e-24 Score=187.09 Aligned_cols=100 Identities=20% Similarity=0.314 Sum_probs=90.9
Q ss_pred cccceEEEEEEeCCCceEEECCCCcEEEEEEEEEcCC----------CCCeeEEEEEechHHHHHHhhcCCCCeEEEEEE
Q 017902 67 KVANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAA----------SHSLWIPILFEGDLAHIASSHLKKDDHVHIAGQ 136 (364)
Q Consensus 67 ~l~NsV~LIGrLg~DPElr~T~~Gk~va~f~LAv~~~----------~~T~wI~Vv~wGkLAE~aaqhLkKGD~V~VsGR 136 (364)
+|||+|+|||||++|||++++++|..+|.|+||+++. ++++||+|++||++||.|++||+|||+|+|+|+
T Consensus 3 ~~mN~v~L~GrL~~dPelr~t~~G~~v~~f~lA~~~~~~~~~~Ge~~~~t~~~~v~~wg~~Ae~~~~~l~KG~~V~V~G~ 82 (145)
T 1qvc_A 3 RGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYIEGQ 82 (145)
T ss_dssp CCEEEEEEEEEESSCCEEECCSSSCCEEEEEEEECCCCSCCSSSSCCCCCEEEEEEEETHHHHHHHHHCCTTCEEEEEEE
T ss_pred CceEEEEEEEEeCCCCEEEECCCCCEEEEEEEEEcCCcccccCCcEecccEEEEEEEehHHHHHHHHhcCCCCEEEEEEE
Confidence 6899999999999999999999999999999999761 248999999999999999999999999999999
Q ss_pred eeeCCCCcC---CeEEEEE---EEeeEEeccCCCcc
Q 017902 137 LTADPPAIE---GQANVQV---MVHSLNLIEPTSQK 166 (364)
Q Consensus 137 L~s~syedk---~qt~~eV---vVe~v~FV~~k~~~ 166 (364)
|++++|+++ .++.++| +|++|.||+.+...
T Consensus 83 L~~~~~~d~dG~~r~~~ei~a~va~~i~~l~~~~~~ 118 (145)
T 1qvc_A 83 LRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGG 118 (145)
T ss_dssp EEEEEECSSSSCEEEEEEEECTTCEEEECCCCSCCC
T ss_pred EEeeEEECCCCcEEEEEEEeeeEeCEEEEccCCCcC
Confidence 999999865 4667899 99999999876543
No 8
>1txy_A Primosomal replication protein N; OB fold, dimer, DNA binding protein; 2.00A {Escherichia coli} SCOP: b.40.4.3 PDB: 1woc_A 2pnh_A 4apv_A
Probab=99.91 E-value=1.4e-24 Score=179.51 Aligned_cols=95 Identities=15% Similarity=0.284 Sum_probs=79.0
Q ss_pred ccceEEEEEEeCCCceEEECCCCcEEEEEEEEEcCC-CCCee-------EEEEEechHHHHHHhhcCCCCeEEEEEEeee
Q 017902 68 VANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAA-SHSLW-------IPILFEGDLAHIASSHLKKDDHVHIAGQLTA 139 (364)
Q Consensus 68 l~NsV~LIGrLg~DPElr~T~~Gk~va~f~LAv~~~-~~T~w-------I~Vv~wGkLAE~aaqhLkKGD~V~VsGRL~s 139 (364)
|+|+|+|||||++|||+|||++|.++|.|+||++.. .+++| |+|++||++||.+++||+||++|+|+|+|++
T Consensus 1 M~N~v~L~G~l~~dpelR~t~~G~~v~~f~lA~~~~~~~~~~~r~~~~~~~vv~~g~~Ae~~~~~l~KG~~V~V~G~L~~ 80 (104)
T 1txy_A 1 MTNRLVLSGTVCRAPLRKVSPSGIPHCQFVLEHRSVQEEAGFHRQAWCQMPVIVSGHENQAITHSITVGSRITVQGFISC 80 (104)
T ss_dssp CCEEEEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEEETTEEEEEEEEEEEEEESSTTHHHHTTCCTTCEEEEEEEEEC
T ss_pred CcEEEEEEEEECCCceEEECCCCCEEEEEEEEEeCccccCCceeceeEEEEEEEEhHHHHHHHhhCCCCCEEEEEEEEEe
Confidence 789999999999999999999999999999999642 45667 9999999999999999999999999999999
Q ss_pred CCCCcCCeEEEEEEEeeEEeccCC
Q 017902 140 DPPAIEGQANVQVMVHSLNLIEPT 163 (364)
Q Consensus 140 ~syedk~qt~~eVvVe~v~FV~~k 163 (364)
+ ...+|+..++|+|++|+|++++
T Consensus 81 ~-~~~~G~~r~~v~~~~i~~l~~~ 103 (104)
T 1txy_A 81 H-KAKNGLSKMVLHAEQIELIDSG 103 (104)
T ss_dssp ---------CCEEEEEEEEEC---
T ss_pred c-cCCCCCEEEEEEEEEEEECcCC
Confidence 8 3333555599999999999753
No 9
>3tqy_A Single-stranded DNA-binding protein; DNA replication, transferase; 2.60A {Coxiella burnetii}
Probab=99.90 E-value=9.1e-24 Score=187.03 Aligned_cols=100 Identities=18% Similarity=0.327 Sum_probs=87.4
Q ss_pred cccceEEEEEEeCCCceEEECCCCcEEEEEEEEEcCC----------CCCeeEEEEEechHHHHHHhhcCCCCeEEEEEE
Q 017902 67 KVANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAA----------SHSLWIPILFEGDLAHIASSHLKKDDHVHIAGQ 136 (364)
Q Consensus 67 ~l~NsV~LIGrLg~DPElr~T~~Gk~va~f~LAv~~~----------~~T~wI~Vv~wGkLAE~aaqhLkKGD~V~VsGR 136 (364)
+.+|+|+|||||++|||++++++|+.+|.|+||+++. +.++||+|++||++||.|++||+||++|+|+|+
T Consensus 6 ~~mN~V~LiGrL~~dPelr~t~~G~~v~~f~lA~~~~~~d~~~Ge~~e~t~~i~vv~wg~~Ae~~~~~l~KG~~V~VeG~ 85 (158)
T 3tqy_A 6 RGVNKVILIGNLGQDPEVRYTPNGNAVANVTLATSTTWRDKQTGELQERTEWHRIAFFNRLAEIVGEYLRKGSKIYIEGS 85 (158)
T ss_dssp SCEEEEEEEEEESSSCEEEECTTCCEEEEEEEEEEEEEECTTTCCEEEEEEEEEEEEETHHHHHHHHHCCTTCEEEEEEE
T ss_pred cccCEEEEEEEECCCCEEEECCCCCEEEEEEEEEcCceeccCCCCEeeeeEEEEEEEEhHHHHHHHhhcCCCCEEEEEEE
Confidence 3589999999999999999999999999999999641 147999999999999999999999999999999
Q ss_pred eeeCCCCcC---CeEEEEEEEeeEEeccCCCcc
Q 017902 137 LTADPPAIE---GQANVQVMVHSLNLIEPTSQK 166 (364)
Q Consensus 137 L~s~syedk---~qt~~eVvVe~v~FV~~k~~~ 166 (364)
|++++|+++ .++.++|+|++|.||+.+...
T Consensus 86 L~~~~~~dkdG~~r~~~eV~a~~i~~L~~k~~~ 118 (158)
T 3tqy_A 86 LRTRKWQDKNGVDRYTTEIIANEMHMLDNRGGG 118 (158)
T ss_dssp EEEEEEECSSSCEEEEEEEEEEEEEECC-----
T ss_pred EEeeeEECCCCCEEEEEEEEEeEEEEccCCccc
Confidence 999999865 467889999999999877643
No 10
>3lgj_A Single-stranded DNA-binding protein; niaid, CAT scratch fever, rochalimaea, LYME disease, ALS collaborative crystallography, DNA replication; 2.50A {Bartonella henselae}
Probab=99.90 E-value=1.3e-23 Score=188.22 Aligned_cols=100 Identities=19% Similarity=0.295 Sum_probs=84.9
Q ss_pred cccceEEEEEEeCCCceEEECCCCcEEEEEEEEEcCC----------CCCeeEEEEEech-HHHHHHhhcCCCCeEEEEE
Q 017902 67 KVANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAA----------SHSLWIPILFEGD-LAHIASSHLKKDDHVHIAG 135 (364)
Q Consensus 67 ~l~NsV~LIGrLg~DPElr~T~~Gk~va~f~LAv~~~----------~~T~wI~Vv~wGk-LAE~aaqhLkKGD~V~VsG 135 (364)
.|+|+|+||||||+|||+|++++|+.+|.|+||+++. ++++||+|++||+ +|+.|++||+||++|+|+|
T Consensus 21 ~~mNkV~LiGrL~~DPelr~t~~G~~v~~FslAv~~~~~~~~~Ge~~~~t~~i~vv~wg~~lAe~~~~~l~KG~~V~VeG 100 (169)
T 3lgj_A 21 SMLNKVMLIGYLGDDPESKTMTSGAEVVNFRMATFESYMNKNTHQKVEKTEWHSVVVFNPHFAKIALQYLHKGSKVYIEG 100 (169)
T ss_dssp CCEEEEEEEEEESSCCEEEECTTSCEEEEEEEEEEC------------CEEEEEEEECCHHHHHHHHHHCCTTCEEEEEE
T ss_pred cceeEEEEEEEECCCCeEEECCCCCEEEEEEEEEcCceecccCCccccccEEEEEEEeCHHHHHHHHHhCCCCCEEEEEE
Confidence 5799999999999999999999999999999999752 2579999999999 9999999999999999999
Q ss_pred EeeeCCCCcC---CeEEEEEEE----eeEEeccCCCcc
Q 017902 136 QLTADPPAIE---GQANVQVMV----HSLNLIEPTSQK 166 (364)
Q Consensus 136 RL~s~syedk---~qt~~eVvV----e~v~FV~~k~~~ 166 (364)
+|++++|+++ .++.++|+| ++|.||++++..
T Consensus 101 rL~~r~~~dkdG~~r~~~eIva~~~~~~i~~L~~k~~~ 138 (169)
T 3lgj_A 101 KLQTRKWQDKNGHDRYTTEIVLPQYKGELHLLDAKKEQ 138 (169)
T ss_dssp EEEEECC--------CEEEEEECTTCCEEEEECC----
T ss_pred EEEEEEEECCCCCEEEEEEEEEEeccCcEEEccCCCcc
Confidence 9999999865 567889988 689999987765
No 11
>1v1q_A Primosomal replication protein N; primosome, DNA replication, DNA binding; 2.1A {Escherichia coli} SCOP: b.40.4.3 PDB: 2ccz_A
Probab=99.90 E-value=3.9e-24 Score=185.72 Aligned_cols=98 Identities=14% Similarity=0.250 Sum_probs=85.7
Q ss_pred ccceEEEEEEeCCCceEEECCCCcEEEEEEEEEcC-----C---CCCeeEEEEEechHHHHHHhhcCCCCeEEEEEEeee
Q 017902 68 VANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHA-----A---SHSLWIPILFEGDLAHIASSHLKKDDHVHIAGQLTA 139 (364)
Q Consensus 68 l~NsV~LIGrLg~DPElr~T~~Gk~va~f~LAv~~-----~---~~T~wI~Vv~wGkLAE~aaqhLkKGD~V~VsGRL~s 139 (364)
|+|+|+|||||++|||+|||++|.+||.|+||+++ + +.++||+|++||++||.|++||+||++|+|+|+|++
T Consensus 18 M~NkViLiGrL~~DPElRyTpsG~~Va~ftLA~~~~~~~~G~~~~~~~~i~vv~wGk~AE~~~~yl~KGs~V~VeGrL~t 97 (134)
T 1v1q_A 18 MTNRLVLSGTVCRAPLRKVSPSGIPHCQFVLEHRSVQEEAGFHRQAWCQMPVIVSGHENQAITHSITVGSRITVQGFISC 97 (134)
T ss_dssp CCEEEEEEEEEEEEEEEEECTTCCEEEEEEEEEEEEEEETTEEEEEEEEEEEEEESTGGGGGGTTCCTTCEEEEEEEEEE
T ss_pred ceeEEEEEEEECcCCceEECCCCCEEEEEEEEEeCcCcCCCCEecceEEEEEEEEhHHHHHHHHhcCCCCEEEEEEEEEE
Confidence 45999999999999999999999999999999964 1 135799999999999999999999999999999999
Q ss_pred CCCCcCCeEEEEEEEeeEEeccCCCcc
Q 017902 140 DPPAIEGQANVQVMVHSLNLIEPTSQK 166 (364)
Q Consensus 140 ~syedk~qt~~eVvVe~v~FV~~k~~~ 166 (364)
++ ..+++..|.++|++|.|++++...
T Consensus 98 r~-~k~G~kr~~~~a~~i~~l~~k~~~ 123 (134)
T 1v1q_A 98 HK-AKNGLSKMVLHAEQIELIDSVDKL 123 (134)
T ss_dssp EC-TTTTSCEEEEEEEEEEETTSCSCC
T ss_pred EE-CCCCCEEEEEEEEEEEECcCCCCc
Confidence 85 233666777899999999876544
No 12
>4gs3_A Single-stranded DNA-binding protein; primosome, oligonucleotide/oligosaccharide binding domain, D binding protein; 1.09A {Thermoanaerobacter tengcongensis}
Probab=99.89 E-value=3.4e-23 Score=173.78 Aligned_cols=91 Identities=20% Similarity=0.339 Sum_probs=80.0
Q ss_pred cceEEEEEEeCCCceEEECCCCcEEEEEEEEEcCC-CCCeeEEEEEechHHHHHHhhcCCCCeEEEEEEeee-CCCCcC-
Q 017902 69 ANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAA-SHSLWIPILFEGDLAHIASSHLKKDDHVHIAGQLTA-DPPAIE- 145 (364)
Q Consensus 69 ~NsV~LIGrLg~DPElr~T~~Gk~va~f~LAv~~~-~~T~wI~Vv~wGkLAE~aaqhLkKGD~V~VsGRL~s-~syedk- 145 (364)
.|+|+|||||++|||+++|++|..++.|+|||++. ..++||+|++|+++||.|..| ||++|+|+|+|++ +.|+++
T Consensus 11 ~N~V~LiGrl~~dpelr~t~~G~~v~~f~lAV~R~~~~~Dfi~ivvw~klAe~~~~~--kG~~v~v~G~lrsy~~~~~~d 88 (107)
T 4gs3_A 11 NNTVTLVGKVFTPLEFSHELYGEKFFNFILEVPRLSETKDYLPITISNRLFEGMNLE--VGTRVKIEGQLRSYNRKSPEE 88 (107)
T ss_dssp CSCEEEEEEECSCCEEEEEETTEEEEEEEEEEECTTSCEEEEEEEEEGGGSTTCCCC--TTCEEEEEEEEEEEECC----
T ss_pred CCEEEEEEEECCCceEEEecCCcEEEEEEEEeCCCCCCCcEEEEEEEhHHhhHHhhc--CCCEEEEEEEEEecceEECCC
Confidence 49999999999999999999999999999999985 567999999999999999754 9999999999987 678755
Q ss_pred --CeEEEEEEEeeEEecc
Q 017902 146 --GQANVQVMVHSLNLIE 161 (364)
Q Consensus 146 --~qt~~eVvVe~v~FV~ 161 (364)
.++.++|+|++|+||+
T Consensus 89 G~~R~v~eV~a~~i~fld 106 (107)
T 4gs3_A 89 GKNKLILTVFARDISVVP 106 (107)
T ss_dssp ----EEEEEEEEEEEEEC
T ss_pred CCEEEEEEEEEEEEEEcc
Confidence 6888999999999996
No 13
>3afp_A Single-stranded DNA-binding protein; OB-fold, quaternary structure and stability, changes on oligomerisation, water-bridges, DNA damage; 2.05A {Mycobacterium leprae} PDB: 3afq_A 1ue1_A 1ue5_A 1ue6_A 1ue7_A 1x3e_A 1x3f_A 1x3g_A 3a5u_A*
Probab=99.89 E-value=5.4e-23 Score=183.68 Aligned_cols=97 Identities=15% Similarity=0.237 Sum_probs=85.7
Q ss_pred ccceEEEEEEeCCCceEEECCCCcEEEEEEEEEcCC-----------CCCeeEEEEEechHHHHHHhhcCCCCeEEEEEE
Q 017902 68 VANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAA-----------SHSLWIPILFEGDLAHIASSHLKKDDHVHIAGQ 136 (364)
Q Consensus 68 l~NsV~LIGrLg~DPElr~T~~Gk~va~f~LAv~~~-----------~~T~wI~Vv~wGkLAE~aaqhLkKGD~V~VsGR 136 (364)
.+|+|+|||||++|||+|++++|+.+|.|+||+++. .+++||+|++|+++||.|++||+||++|+|+|+
T Consensus 3 ~~N~V~LiG~L~~dPelr~t~~G~~va~f~lAv~~~~~~~~~Ge~~d~~t~~~~v~~wg~~Ae~~~~~l~KG~~V~VeGr 82 (168)
T 3afp_A 3 GDTTITIVGNLTADPELRFTSSGAAVVNFTVASTPRIYDRQSGEWKDGEALFLRCNIWREAAENVAESLTRGARVIVTGR 82 (168)
T ss_dssp CCCEEEEEEEESSSCCCEECTTSCEEEEEEEEECC--------CCCCCCCEEEEEEEEHHHHHHHHHHCCTTCEEEEEEE
T ss_pred ccCEEEEEEEECCCCEEEECCCCCEEEEEEEEEccccccccCCcEecCCcEEEEEEEehHHHHHHHHhCCCCCEEEEEEE
Confidence 379999999999999999999999999999999641 158999999999999999999999999999999
Q ss_pred eeeCCCCcC---CeEEEEEEEe----eEEeccCCC
Q 017902 137 LTADPPAIE---GQANVQVMVH----SLNLIEPTS 164 (364)
Q Consensus 137 L~s~syedk---~qt~~eVvVe----~v~FV~~k~ 164 (364)
|++++|+++ .++.++|+|+ +|.|++.+.
T Consensus 83 L~~~~~~dkdG~~r~~~ev~a~~v~~~l~~l~~~~ 117 (168)
T 3afp_A 83 LKQRSFETREGEKRTVVEVEVDEIGPSLRYATAKV 117 (168)
T ss_dssp EEEEEEC-CCSCCEEEEEEEEEEEEECCSSEEEEE
T ss_pred EEeeeEECCCCcEEEEEEEEEEEeecCEEEecccc
Confidence 999999865 5778899777 678886543
No 14
>4dam_A Single-stranded DNA-binding protein 1; OB-fold; 1.70A {Streptomyces coelicolor}
Probab=99.88 E-value=4.1e-23 Score=177.40 Aligned_cols=92 Identities=17% Similarity=0.209 Sum_probs=82.5
Q ss_pred ccceEEEEEEeCCCceEEECCCCcEEEEEEEEEcCC-----------CCCeeEEEEEechHHHHHHhhcCCCCeEEEEEE
Q 017902 68 VANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAA-----------SHSLWIPILFEGDLAHIASSHLKKDDHVHIAGQ 136 (364)
Q Consensus 68 l~NsV~LIGrLg~DPElr~T~~Gk~va~f~LAv~~~-----------~~T~wI~Vv~wGkLAE~aaqhLkKGD~V~VsGR 136 (364)
.+|.|+||||||+|||++++++| .+|.|+||+++. .+++||+|++||++||.|++||+|||+|+|+|+
T Consensus 14 ~~N~V~LiGrL~~dPelr~t~~G-~v~~fslAv~~~~~d~~~Ge~~d~~t~w~~v~~wg~~Ae~~~~~l~KG~~V~VeGr 92 (128)
T 4dam_A 14 NEIMICAVGNVATTPVFRDLANG-PSVRFRLAVTARYWDREKNAWTDGHTNFFTVWANRQLATNASGSLAVGDPVVVQGR 92 (128)
T ss_dssp CCCEEEEEEEECSCCEEEEETTE-EEEEEEEEEEEEEEETTTTEEEEEEEEEEEEEEEHHHHHHHHHHCCTTCEEEEEEE
T ss_pred ceeEEEEEEEECCCCEEEEcCCC-CEEEEEEEEcCceecccCCceecCCcEEEEEEEEcHHHHHHHHhcCCCCEEEEEEE
Confidence 38999999999999999999999 999999999741 157999999999999999999999999999999
Q ss_pred eeeCCCCcC--CeEEEEEEEeeEEec
Q 017902 137 LTADPPAIE--GQANVQVMVHSLNLI 160 (364)
Q Consensus 137 L~s~syedk--~qt~~eVvVe~v~FV 160 (364)
|++++|+.+ .++.++|+|++|..-
T Consensus 93 L~~~~~dkdG~~r~~~ev~a~~vg~d 118 (128)
T 4dam_A 93 LKVRTDVREGQSRTSADIDAVAIGHD 118 (128)
T ss_dssp EEEEEEEETTEEEEEEEEEEEEEEEC
T ss_pred EEEeEEcCCCCEEEEEEEEEEEEEec
Confidence 999999333 467889999988654
No 15
>3pgz_A Single-stranded DNA-binding protein; ssgcid, single-strand binding protein, structural genomics center for infectious disease; 2.10A {Bartonella henselae}
Probab=99.88 E-value=8.6e-23 Score=186.82 Aligned_cols=99 Identities=20% Similarity=0.336 Sum_probs=86.3
Q ss_pred ccceEEEEEEeCCCceEEECCCCcEEEEEEEEEcCC----------CCCeeEEEEEech-HHHHHHhhcCCCCeEEEEEE
Q 017902 68 VANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAA----------SHSLWIPILFEGD-LAHIASSHLKKDDHVHIAGQ 136 (364)
Q Consensus 68 l~NsV~LIGrLg~DPElr~T~~Gk~va~f~LAv~~~----------~~T~wI~Vv~wGk-LAE~aaqhLkKGD~V~VsGR 136 (364)
.+|+|+|||||++|||+|+|++|+.+|.|+||+++. ++++||+|++|++ +||.|++||+||++|+|+|+
T Consensus 25 ~mNkV~LiGrLg~DPElR~t~~G~~Va~FsLAvnr~~kd~~~Ge~~e~Tdwi~Vvawgk~lAe~~~~yL~KGs~V~VeGr 104 (193)
T 3pgz_A 25 SLNKVILIGNLGADPEIRRLNSGDQVANLRIATSESWRDRNTNERKERTEWHNIVIFNENLVKVVEQYLKKGSKIYIEGQ 104 (193)
T ss_dssp CEEEEEEEEEESSCCEEEECTTSCEEEEEEEEEEEEECCC-----EEEEEEEEEEECCHHHHHHHHHHCCTTCEEEEEEE
T ss_pred hcCEEEEEEEECCCCeEEECCCCCEEEEEEEEEcCceeccCCCceeeeeEEEEEEEECHHHHHHHHhhcCCCCEEEEEEE
Confidence 379999999999999999999999999999999751 1479999999996 99999999999999999999
Q ss_pred eeeCCCCcC---CeEEEEEEEe----eEEeccCCCcc
Q 017902 137 LTADPPAIE---GQANVQVMVH----SLNLIEPTSQK 166 (364)
Q Consensus 137 L~s~syedk---~qt~~eVvVe----~v~FV~~k~~~ 166 (364)
|++++|+++ .++.++|+|+ +|.||+++...
T Consensus 105 L~trswedkdG~kr~~tEVva~~~~~~i~fL~sk~~~ 141 (193)
T 3pgz_A 105 LQTRKWQDQNGNDRYTTEIVLQKYRGELQMLDGRAAA 141 (193)
T ss_dssp EEEEEEECTTSCEEEEEEEEECTTCCEEEECC-----
T ss_pred EEEEEeECCCCCEEEEEEEEEEeccCceEECcCCCCC
Confidence 999999865 5778899999 68999987654
No 16
>1eqq_A Single stranded DNA binding protein; beta barrel, protein-DNA complex, replication/RNA complex; HET: 5MU; 3.20A {Escherichia coli} SCOP: b.40.4.3
Probab=99.88 E-value=1.2e-23 Score=189.81 Aligned_cols=99 Identities=20% Similarity=0.321 Sum_probs=87.8
Q ss_pred cccceEEEEEEeCCCceEEECCCCcEEEEEEEEEcCC----------CCCeeEEEEEechHHHHHHhhcCCCCeEEEEEE
Q 017902 67 KVANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAA----------SHSLWIPILFEGDLAHIASSHLKKDDHVHIAGQ 136 (364)
Q Consensus 67 ~l~NsV~LIGrLg~DPElr~T~~Gk~va~f~LAv~~~----------~~T~wI~Vv~wGkLAE~aaqhLkKGD~V~VsGR 136 (364)
+++|+|+|||||++|||+|+|++|+.+|.|+||+++. ++++||+|++||++||.|++||+||++|+|+|+
T Consensus 4 ~~~N~V~LiGrL~~dPelr~t~~G~~v~~f~LAv~~~~~d~~~Ge~~~~t~~i~vv~wg~~Ae~~~~~l~KG~~V~VeGr 83 (178)
T 1eqq_A 4 RGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYIEGQ 83 (178)
T ss_dssp CCEEEEEEEEEESSSCCCCEETTTEECCCCEEEEEECCCCSSSSSCCCEEEEEEEEECHHHHHHHHHHCCTTCEEEECCE
T ss_pred cCeeEEEEEEEECCCCEEEECCCCCEEEEEEEEEcCCeecCCCCceecccEEEEEEEccHHHHHHHHhcCCCCEEEEEEE
Confidence 4789999999999999999999999999999998751 137999999999999999999999999999999
Q ss_pred eeeCCCCcC---CeEEEEE---EEeeEEeccCCCc
Q 017902 137 LTADPPAIE---GQANVQV---MVHSLNLIEPTSQ 165 (364)
Q Consensus 137 L~s~syedk---~qt~~eV---vVe~v~FV~~k~~ 165 (364)
|++++|+++ .++.++| +|++|.||+.+..
T Consensus 84 L~~r~~~dkdG~~r~~~eI~v~va~~i~~l~~~~~ 118 (178)
T 1eqq_A 84 LRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQG 118 (178)
T ss_dssp EEEEEEECSSSEEEEEEEEECSSSCCEECSCC---
T ss_pred EEeeeEECCCCCEEEEEEEeeeecCeEEEccccCC
Confidence 999999865 4667899 8999999987644
No 17
>3fhw_A Primosomal replication protein N; PRIB BPR162 X-RAY NESG, structural genomics, PSI-2, protein initiative; 1.90A {Bordetella parapertussis} PDB: 3dm4_A 3klw_A
Probab=99.88 E-value=1.3e-22 Score=172.06 Aligned_cols=94 Identities=16% Similarity=0.209 Sum_probs=82.8
Q ss_pred cceEEEEEEeCCCceEEECCCCcEEEEEEEEEcCC-------CC-CeeEEEEEechHHHHHHhhcCCCCeEEEEEEeeeC
Q 017902 69 ANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAA-------SH-SLWIPILFEGDLAHIASSHLKKDDHVHIAGQLTAD 140 (364)
Q Consensus 69 ~NsV~LIGrLg~DPElr~T~~Gk~va~f~LAv~~~-------~~-T~wI~Vv~wGkLAE~aaqhLkKGD~V~VsGRL~s~ 140 (364)
||+|+|+|||++|||+|||++|.++|.|+||+++. .+ .+||+|++||++||.+ +||+||++|+|+|+|+++
T Consensus 1 MNkviL~GrL~~dPelRyTpsG~~V~~f~LA~~~~~~~~g~~r~~~~~i~vv~~Gk~AE~~-~~l~kGs~V~VeGrL~tr 79 (115)
T 3fhw_A 1 MNTLELSARVLECGAMRHTPAGLPALELLLVHESEVVEAGHPRRVELTISAVALGDLALLL-ADTPLGTEMQVQGFLAPA 79 (115)
T ss_dssp CEEEEEEEEEEEECCCEECTTSCEEEEEEEEEEEECCCCC--CEEEEEEEEEEETHHHHHH-TTCCTTCEEEEEEEEEES
T ss_pred CCEEEEEEEECcCcceEECCCCCEEEEEEEEEcceeecCCCeeeeeEEEEEEEEhHHHHhh-hccCCCCEEEEEEEEEEC
Confidence 79999999999999999999999999999999741 11 3669999999999998 999999999999999999
Q ss_pred CCCcCCeEEEEEEEeeEEeccCCCcc
Q 017902 141 PPAIEGQANVQVMVHSLNLIEPTSQK 166 (364)
Q Consensus 141 syedk~qt~~eVvVe~v~FV~~k~~~ 166 (364)
+- ++ +..+|.|++|+||++....
T Consensus 80 s~--~G-~kl~l~a~~Ie~l~~~~~~ 102 (115)
T 3fhw_A 80 RK--DS-VKVKLHLQQARRIAGSMGR 102 (115)
T ss_dssp ST--TC-SSEEEEEEEEEECCCSCCC
T ss_pred CC--CC-CEEEEEEEEEEEcCCCCCC
Confidence 63 34 5689999999999876553
No 18
>3k7u_C MP18 RNA editing complex protein; OB-fold, RNA-editing proteins, kinetoplastids, system, RNA binding protein; 2.10A {Trypanosoma brucei} PDB: 3k80_D 3stb_D
Probab=99.87 E-value=2.9e-22 Score=176.36 Aligned_cols=96 Identities=16% Similarity=0.137 Sum_probs=82.8
Q ss_pred ccceEEEEEEeCCCceEEECCCCcEEEEEEEEEcCC----------CCCeeEEEEEechH-HHHHHhhcCCCCeEEEEEE
Q 017902 68 VANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAA----------SHSLWIPILFEGDL-AHIASSHLKKDDHVHIAGQ 136 (364)
Q Consensus 68 l~NsV~LIGrLg~DPElr~T~~Gk~va~f~LAv~~~----------~~T~wI~Vv~wGkL-AE~aaqhLkKGD~V~VsGR 136 (364)
.+|+|+||||||+||| +++ +|+.+|.|+||+++. ++++||+|++||++ ||.|++||+||++|+|+|+
T Consensus 5 ~~NkV~LiGrLg~DPe-r~t-~G~~va~FslAv~~~~~~~~Ge~~~~~t~w~~vv~wgk~lAe~~~~yl~KG~~V~VeGr 82 (148)
T 3k7u_C 5 SVNSVTLVGVVHDIQS-GFV-YEDAVTQFTLTTTSIDTTHPTQEVVVEKDHHTIRCFGELFSAEVKQKVKEGNVVCVNGR 82 (148)
T ss_dssp CCCCEEEEEEEEEEEE-EES-SSSEEEEEEEEEECC-----------CEEEEEEEEESHHHHHHHHHHCCTTCEEEEEEE
T ss_pred cCcEEEEEEEeccCCE-eee-CCcEEEEEEEEECCceecCCCCEEccccEEEEEEEECcHHHHHHHhhCCCCCEEEEEEE
Confidence 4899999999999999 999 999999999999852 35799999999997 9999999999999999999
Q ss_pred eeeCCCCcC---CeEEEEEEEe-----eEEeccCCCc
Q 017902 137 LTADPPAIE---GQANVQVMVH-----SLNLIEPTSQ 165 (364)
Q Consensus 137 L~s~syedk---~qt~~eVvVe-----~v~FV~~k~~ 165 (364)
|++++|+++ .++.++|++- .+.+|.....
T Consensus 83 L~~r~~~dkdG~kr~~teVi~v~~~~g~~~ll~~~r~ 119 (148)
T 3k7u_C 83 LRLSPQLEPSCNKHFYFPYIQVQPPHGQVAVIHGDRR 119 (148)
T ss_dssp EEECCCSCCC-----CCEEEEECTTTCEEEEEECCC-
T ss_pred EEeeeeECCCCCEEEEEEEEEEecCCCeEEEccCCCC
Confidence 999999876 4667788864 5899976654
No 19
>3k8a_A Putative primosomal replication protein; beta-barrel, OB-fold, DNA binding protein; 2.70A {Neisseria gonorrhoeae fa 1090}
Probab=99.87 E-value=2.3e-22 Score=167.19 Aligned_cols=88 Identities=14% Similarity=0.183 Sum_probs=77.6
Q ss_pred cceEEEEEEeCCCceEEECCCCcEEEEEEEEEcCC-------CC-CeeEEEEEechHHHHHHhhcCCCCeEEEEEEeeeC
Q 017902 69 ANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAA-------SH-SLWIPILFEGDLAHIASSHLKKDDHVHIAGQLTAD 140 (364)
Q Consensus 69 ~NsV~LIGrLg~DPElr~T~~Gk~va~f~LAv~~~-------~~-T~wI~Vv~wGkLAE~aaqhLkKGD~V~VsGRL~s~ 140 (364)
.|+|+|||||++|||+|||++|.++|.|+||+++. .+ ++||+|++||++|| +.+ |+||++|+|+|+|+++
T Consensus 7 ~Nkv~LiG~L~~dPelRytp~G~~v~~f~lA~~~~~~~~g~~~~~~~~i~vv~~gk~Ae-~~~-l~KG~~v~veGrL~~r 84 (103)
T 3k8a_A 7 TNLVSLAALIEKAFPIRYTPAGIPVLDIILKHESWQEENGQQCLVQLEIPARILGRQAE-EWQ-YRQGDCATVEGFLAQK 84 (103)
T ss_dssp CEEEEEEEEEEEECCCEECTTSCEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEHHHHH-HST-TCTTCEEEEEEEEEES
T ss_pred ccEEEEEEEECCCCceEECCCCCEEEEEEEEEcccCccCCCEEEeeEEEEEEEEhHHhh-hhc-cCCCCEEEEEEEEEEC
Confidence 39999999999999999999999999999999651 12 35699999999999 655 9999999999999999
Q ss_pred CCCcCCeEEEEEEEeeEEecc
Q 017902 141 PPAIEGQANVQVMVHSLNLIE 161 (364)
Q Consensus 141 syedk~qt~~eVvVe~v~FV~ 161 (364)
+| +++ ...+.+++|+|++
T Consensus 85 s~--~~~-~lvlhi~~i~~i~ 102 (103)
T 3k8a_A 85 SR--RSL-MPMLRIQNIKEYK 102 (103)
T ss_dssp SS--SCC-CEEEEEEEEEECC
T ss_pred cc--CCc-cEEEEEEEEEEcC
Confidence 99 334 7889999999984
No 20
>3eiv_A Single-stranded DNA-binding protein 2; DNA damage, DNA repair, DNA replication, phosphoprotein; 2.14A {Streptomyces coelicolor}
Probab=99.87 E-value=1.4e-21 Score=179.63 Aligned_cols=92 Identities=12% Similarity=0.158 Sum_probs=81.0
Q ss_pred cceEEEEEEeCCCceEEECCCCcEEEEEEEEEcCC-----------CCCeeEEEEEechHHHHHHhhcCCCCeEEEEEEe
Q 017902 69 ANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAA-----------SHSLWIPILFEGDLAHIASSHLKKDDHVHIAGQL 137 (364)
Q Consensus 69 ~NsV~LIGrLg~DPElr~T~~Gk~va~f~LAv~~~-----------~~T~wI~Vv~wGkLAE~aaqhLkKGD~V~VsGRL 137 (364)
+|.|+|||||++|||+|+|++|+.||.|+||+++. .+++||+|++|+++||.|++||+||++|+|+|+|
T Consensus 4 ~N~V~LiGrL~~DPElR~T~~G~~Va~FsLAvn~R~~d~~~Ge~~d~~T~wi~VvawgklAE~v~~~L~KG~~V~VeGrL 83 (199)
T 3eiv_A 4 ETVITVVGNLVDDPELRFTPSGAAVAKFRVASTPRTFDRQTNEWKDGESLFLTCSVWRQAAENVAESLQRGMRVIVQGRL 83 (199)
T ss_dssp CCEEEEEEEESSCCEEEECTTCCEEEEEEEEECC-----------CCCCEEEEEEEETHHHHHHHHHCCTTCEEEEEEEE
T ss_pred ccEEEEEEEECCCCeEEECCCCCEEEEEEEEEcCcccccCCCcEecCccEEEEEEEEhHHHHHHHHhcCCCCEEEEEEEE
Confidence 79999999999999999999999999999999631 2689999999999999999999999999999999
Q ss_pred eeCCCCcC---CeEEEEEEEeeEEec
Q 017902 138 TADPPAIE---GQANVQVMVHSLNLI 160 (364)
Q Consensus 138 ~s~syedk---~qt~~eVvVe~v~FV 160 (364)
++++|+++ .++.++|+|++|..-
T Consensus 84 ~~rswedkdG~kr~~~eVvA~~Ig~d 109 (199)
T 3eiv_A 84 KQRSYEDREGVKRTVYELDVDEVGAS 109 (199)
T ss_dssp EEEC--------CCEEEEEEEEEEEE
T ss_pred EeeEEECCCCCEEEEEEEEEEEEecc
Confidence 99999965 678999999999764
No 21
>2fxq_A Single-strand binding protein; strand beta-sheet extended loops, DNA binding protein; 1.85A {Thermus aquaticus} PDB: 2ihe_A 2cwa_A 2ihf_A
Probab=99.87 E-value=6.4e-22 Score=186.58 Aligned_cols=99 Identities=17% Similarity=0.214 Sum_probs=87.2
Q ss_pred cccceEEEEEEeCCCceEEECCCCcEEEEEEEEEcCC------CCCeeEEEEEechHHHHHHhhcCCCCeEEEEEEeeeC
Q 017902 67 KVANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAA------SHSLWIPILFEGDLAHIASSHLKKDDHVHIAGQLTAD 140 (364)
Q Consensus 67 ~l~NsV~LIGrLg~DPElr~T~~Gk~va~f~LAv~~~------~~T~wI~Vv~wGkLAE~aaqhLkKGD~V~VsGRL~s~ 140 (364)
+++|+|+|+|||++|||++++++|+.+|.|+||+++. +.++||+|++||++|+.|+ ||+||++|+|+|+|+++
T Consensus 126 ~~~N~v~l~G~l~~dpe~r~t~~G~~v~~f~lAv~~~~~g~~~~~t~~~~v~~wg~~Ae~~~-~l~KG~~V~V~G~l~~~ 204 (264)
T 2fxq_A 126 RALNQVILMGNLTRDPDLRYTPQGTAVVRLGLAVNERRRGQEEERTHFLEVQAWRELAEWAS-ELRKGDGLLVIGRLVND 204 (264)
T ss_dssp CCCEEEEEEEEESSCCCCEECTTCCEEEEEEEEEECCC-------EEEEEEEEEHHHHHHHT-TCCTTCEEEEEEEEEEE
T ss_pred cceEEEEEEEEECCCCEEEECCCCCEEEEEEEEEcCCcCCCCccccEEEEEEEEChHHHHhh-hcCCCCEEEEEEEEEee
Confidence 4689999999999999999999999999999999873 2579999999999999999 99999999999999999
Q ss_pred CCCcC---CeEEEEEEEeeEEeccCCCcc
Q 017902 141 PPAIE---GQANVQVMVHSLNLIEPTSQK 166 (364)
Q Consensus 141 syedk---~qt~~eVvVe~v~FV~~k~~~ 166 (364)
+|+++ .++.++|+|++|.|++.+...
T Consensus 205 ~~~~~dG~~~~~~ev~a~~i~~l~~~~~~ 233 (264)
T 2fxq_A 205 SWTSSSGERRFQTRVEALRLERPTRGPAQ 233 (264)
T ss_dssp EEECTTSCEEEEEEEEEEEEECCCC----
T ss_pred EEECCCCCEEEEEEEEEEEEEECcccccc
Confidence 99865 466789999999999876554
No 22
>3k81_C MP18 RNA editing complex protein; krepa6, single domain antibody, immune system, RNA BIND protein; 3.40A {Trypanosoma brucei}
Probab=99.87 E-value=5.7e-22 Score=177.40 Aligned_cols=99 Identities=17% Similarity=0.153 Sum_probs=82.4
Q ss_pred ccccceEEEEEEeCCCceEEECCCCcEEEEEEEEEcC-------C---CCCeeEEEEEechH-HHHHHhhcCCCCeEEEE
Q 017902 66 VKVANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHA-------A---SHSLWIPILFEGDL-AHIASSHLKKDDHVHIA 134 (364)
Q Consensus 66 p~l~NsV~LIGrLg~DPElr~T~~Gk~va~f~LAv~~-------~---~~T~wI~Vv~wGkL-AE~aaqhLkKGD~V~Vs 134 (364)
...+|+|+||||||+|||+|+++ ..||.|+||+++ + ++++||+|++||++ ||+|++||+||++|+|+
T Consensus 19 a~smNkViLiGrLg~DPElR~t~--~~Va~fsLAt~~r~~~~~~ge~~~~Tdw~~Vv~wgk~lAE~~~~yL~KGs~V~Ve 96 (164)
T 3k81_C 19 CKSVNSVTLVGVVHDIQSGFVYE--DAVTQFTLTTTSIDTTHPTQEVVVEKDHHTIRCFGELFSAEVKQKVKEGNVVCVN 96 (164)
T ss_dssp -CCEEEEEEEEEEECCCCEESSS--CEECCEEEEECCC--------CCCCCEEEEEEECCHHHHHHHHHHCCTTCEEEEC
T ss_pred hcCCcEEEEEEEeccCCEEEEcC--ccEEEEEEEEcCceeeCCCCcCccceEEEEEEEECCHHHHHHHhhcCCCCEEEEE
Confidence 35699999999999999999999 899999999983 1 35899999999999 99999999999999999
Q ss_pred EEeeeCCCCcC---CeE-EEEEEEe----eEEeccCCCcc
Q 017902 135 GQLTADPPAIE---GQA-NVQVMVH----SLNLIEPTSQK 166 (364)
Q Consensus 135 GRL~s~syedk---~qt-~~eVvVe----~v~FV~~k~~~ 166 (364)
|+|++++|+|+ +++ +..|+|. .|.+|+.....
T Consensus 97 GrL~tr~w~D~~g~k~~~~~~i~V~~~~g~l~~L~~~r~~ 136 (164)
T 3k81_C 97 GRLRLSPQLEPSCNKHFYFPYIQVQPPHGQVAVIHGDRRT 136 (164)
T ss_dssp CEEEEECCCCSSCSCCCCEEEEEECTTTCCEEEECC----
T ss_pred EEEEeeeEEcCCCCEEEEEEEEEEeCCCCEEEEecCCCCC
Confidence 99999999876 233 4455665 79999876544
No 23
>1se8_A Single-strand binding protein; DNA binding protein; 1.80A {Deinococcus radiodurans} SCOP: b.40.4.3
Probab=99.85 E-value=4e-21 Score=185.48 Aligned_cols=99 Identities=16% Similarity=0.201 Sum_probs=88.8
Q ss_pred cccceEEEEEEeCCCceEEECCCCcEEEEEEEEEcCC---------CCCeeEEEEEechHHHHHHhh-cCCCCeEEEEEE
Q 017902 67 KVANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAA---------SHSLWIPILFEGDLAHIASSH-LKKDDHVHIAGQ 136 (364)
Q Consensus 67 ~l~NsV~LIGrLg~DPElr~T~~Gk~va~f~LAv~~~---------~~T~wI~Vv~wGkLAE~aaqh-LkKGD~V~VsGR 136 (364)
+++|+|+|||||++|||+|++++|..+|.|+||+++. +.++||+|++||++||.|++| |+||++|+|+|+
T Consensus 3 ~~mN~V~LiGrL~~dPelr~t~~G~~v~~f~LAv~r~~~~~~G~~~~~t~~i~vv~~g~~Ae~~~~~~l~KG~~V~VeG~ 82 (301)
T 1se8_A 3 RGMNHVYLIGALARDPELRYTGNGMAVFEATVAGEDRVIGNDGRERNLPWYHRVSILGKPAEWQAERNLKGGDAVVVEGT 82 (301)
T ss_dssp CCEEEEEEEEEESSCCEEEECTTSCEEEEEEEEEEEEC-------CEEEEEEEEEEESHHHHHHHHTCCCTTCEEEEEEE
T ss_pred CceeEEEEEEEECCCceEEECCCCCEEEEEEEEEcCceECCCCCEecceEEEEEEEEcHHHHHHHhhCCCCCCEEEEEEE
Confidence 4689999999999999999999999999999999741 136899999999999999999 999999999999
Q ss_pred eeeCCCCcC---CeEEEEEEEeeEEeccCCCc
Q 017902 137 LTADPPAIE---GQANVQVMVHSLNLIEPTSQ 165 (364)
Q Consensus 137 L~s~syedk---~qt~~eVvVe~v~FV~~k~~ 165 (364)
|++++|+++ .++.++|+|++|.||+.+..
T Consensus 83 L~~r~~~dkdG~~r~~~ev~a~~i~~l~~~~~ 114 (301)
T 1se8_A 83 LEYRQWEAPEGGKRSAVNVKALRMEQLGTQPE 114 (301)
T ss_dssp EEEEEEC-----CEEEEEEEEEEEEECSSCCC
T ss_pred EEeeeEECCCCCEEEEEEEEEeEEEEeecccc
Confidence 999999865 57788999999999987653
No 24
>2fxq_A Single-strand binding protein; strand beta-sheet extended loops, DNA binding protein; 1.85A {Thermus aquaticus} PDB: 2ihe_A 2cwa_A 2ihf_A
Probab=99.85 E-value=2.4e-21 Score=182.68 Aligned_cols=98 Identities=18% Similarity=0.213 Sum_probs=83.3
Q ss_pred ccceEEEEEEeCCCceEEECCCCcEEEEEEEEEcCC---------CCCeeEEEEEechHHHHHHhhcCCCCeEEEEEEee
Q 017902 68 VANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAA---------SHSLWIPILFEGDLAHIASSHLKKDDHVHIAGQLT 138 (364)
Q Consensus 68 l~NsV~LIGrLg~DPElr~T~~Gk~va~f~LAv~~~---------~~T~wI~Vv~wGkLAE~aaqhLkKGD~V~VsGRL~ 138 (364)
++|+|+|+|||++|||+|++++|..+|.|+||+++. +.++||+|++||++|+.+++||+||++|+|+|+|+
T Consensus 4 ~~N~v~L~G~l~~dpelr~t~~G~~v~~f~lA~~~~~~~~~G~~~~~t~~~~v~~~g~~Ae~~~~~l~KG~~V~V~G~L~ 83 (264)
T 2fxq_A 4 GLNQVFLIGTLTARPDMRYTPGGLAILDLNLAGQDAFTDESGQEREVPWYHRVRLLGRQAEMWGDLLEKGQLIFVEGRLE 83 (264)
T ss_dssp CEEEEEEEEEESSCCCCEECTTCCEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEETHHHHHHTTTCCTTCEEEEEEEEE
T ss_pred ceeEEEEEEEeccCCeEEECCCCCEEEEEEEEECCcEECCCCCEecccEEEEEEEEchHHHHHHHhCCCCCEEEEEEEEE
Confidence 589999999999999999999999999999999752 13689999999999999999999999999999999
Q ss_pred eCCCCcC--CeEEEEEEEeeEEeccCCCc
Q 017902 139 ADPPAIE--GQANVQVMVHSLNLIEPTSQ 165 (364)
Q Consensus 139 s~syedk--~qt~~eVvVe~v~FV~~k~~ 165 (364)
+++|+++ .++.++|+|++|.||+.+..
T Consensus 84 ~~~~~~dG~~r~~~ev~a~~i~~l~~~~~ 112 (264)
T 2fxq_A 84 YRQWEKDGEKKSEVQVRAEFIDPLEGRGR 112 (264)
T ss_dssp EC---------CCEEEEEEEEEECCCC--
T ss_pred eeeEEeCCEEEEEEEEEEEEEEECcCCcc
Confidence 9999865 56678999999999987763
No 25
>1se8_A Single-strand binding protein; DNA binding protein; 1.80A {Deinococcus radiodurans} SCOP: b.40.4.3
Probab=99.83 E-value=1.2e-20 Score=182.20 Aligned_cols=99 Identities=18% Similarity=0.215 Sum_probs=86.2
Q ss_pred cccceEEEEEEeCCCceEEECCCCcEEEEEEEEEcCC---------CCCeeEEEEEechHHHHHHhhcCCCCeEEEEEEe
Q 017902 67 KVANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAA---------SHSLWIPILFEGDLAHIASSHLKKDDHVHIAGQL 137 (364)
Q Consensus 67 ~l~NsV~LIGrLg~DPElr~T~~Gk~va~f~LAv~~~---------~~T~wI~Vv~wGkLAE~aaqhLkKGD~V~VsGRL 137 (364)
+|+|+|+|+|||++|||++++++|+.+|.|+||+++. +.++||+|++||++|+.|++ |+||++|+|+|+|
T Consensus 127 ~mmN~V~L~GrL~~dPelr~t~~G~~v~~f~lAv~~~~~d~~Ge~~~~t~~i~vvawg~~Ae~~~~-l~KG~~V~V~GrL 205 (301)
T 1se8_A 127 GAMNEVLVLGNVTRDPEIRYTPAGDAVLSLSIAVNENYQDRQGQRQEKVHYIDATLWRDLAENMKE-LRKGDPVMIMGRL 205 (301)
T ss_dssp TCEEEEEEEEEECSCCEEEECTTCCEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEETHHHHHHTT-CCTTCEEEEEEEE
T ss_pred cceeEEEEEEEECcCCEEEECCCCCEEEEEEEEEcCceEcCCCCcccccEEEEEEECCHHHHHHHh-cCCCCEEEEEEEE
Confidence 5799999999999999999999999999999999751 24789999999999999999 9999999999999
Q ss_pred eeCCCCcC---CeEEEEEEEeeEEeccCCCcc
Q 017902 138 TADPPAIE---GQANVQVMVHSLNLIEPTSQK 166 (364)
Q Consensus 138 ~s~syedk---~qt~~eVvVe~v~FV~~k~~~ 166 (364)
++++|+++ .++.++|+|++|.||+.+...
T Consensus 206 ~~~~y~dkdG~~r~~~ev~a~~i~~l~~k~~~ 237 (301)
T 1se8_A 206 VNEGWTDKDGNKRNSTRVEATRVEALARGAGN 237 (301)
T ss_dssp EEEECC------CEEEEEEEEEEEECCC----
T ss_pred eeeeEECCCCcEEEEEEEEEEEEEEeccCCCC
Confidence 99999865 577899999999999876543
No 26
>3en2_A Probable primosomal replication protein N; PRIB RSR213C NESG X-RAY Q8XZT7 Q8XZT7_ralso, structural genomics, PSI-2; 2.30A {Ralstonia solanacearum}
Probab=99.80 E-value=5.5e-20 Score=152.79 Aligned_cols=76 Identities=12% Similarity=0.163 Sum_probs=65.9
Q ss_pred cceEEEEEEeCCCceEEECCCCcEEEEEEEEEcCC-------CCC-eeEEEEEechHHHHHHhhcCCCCeEEEEEEeeeC
Q 017902 69 ANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAA-------SHS-LWIPILFEGDLAHIASSHLKKDDHVHIAGQLTAD 140 (364)
Q Consensus 69 ~NsV~LIGrLg~DPElr~T~~Gk~va~f~LAv~~~-------~~T-~wI~Vv~wGkLAE~aaqhLkKGD~V~VsGRL~s~ 140 (364)
||+|+|+|||++|||+|||++|.++|.|+||+++. .++ +||+|++||++||.+++ +.||++|.|+|+|+++
T Consensus 2 MN~v~L~GrLt~dPelRyTpsG~~V~~f~LA~~s~~~e~g~~r~~~f~i~vv~wGk~AE~~~~-~~kGs~V~VeGrL~tr 80 (101)
T 3en2_A 2 INRLQLVATLVEREVMRYTPAGVPIVNCLLSYSGQAMEAQAARQVEFSIEALGAGKMASVLDR-IAPGTVLECVGFLARK 80 (101)
T ss_dssp CCCEEEEEEEEEECCCEECTTCCEEEEEEEEEEEEEECC--EEEEEEEEEEEEETHHHHHHTT-SCTTCEEEEEEEEEEC
T ss_pred cCEEEEEEEECcCccEEECCCCCEEEEEEEEEcceEecCCCcEeeeEEEEEEEEhHHHHHHhh-cCCCCEEEEEEEEEeC
Confidence 79999999999999999999999999999999751 123 56999999999999997 6899999999999999
Q ss_pred CCCcC
Q 017902 141 PPAIE 145 (364)
Q Consensus 141 syedk 145 (364)
+|..+
T Consensus 81 s~~s~ 85 (101)
T 3en2_A 81 HRSSK 85 (101)
T ss_dssp C----
T ss_pred cCCCC
Confidence 98644
No 27
>4dni_A Fusion protein of RNA-editing complex proteins MP MP18; krepa3, krepa6, editosome, protein/RNA binding, protein BIND binding protein; 2.55A {Trypanosoma brucei}
Probab=99.78 E-value=4.9e-19 Score=168.16 Aligned_cols=84 Identities=20% Similarity=0.215 Sum_probs=74.4
Q ss_pred cceEEEEEEeCCCceEEECCCCcEEEEEEEEEcCC-------C---CCeeEEEEEechH--HHHHHhhcCCCCeEEEEEE
Q 017902 69 ANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAA-------S---HSLWIPILFEGDL--AHIASSHLKKDDHVHIAGQ 136 (364)
Q Consensus 69 ~NsV~LIGrLg~DPElr~T~~Gk~va~f~LAv~~~-------~---~T~wI~Vv~wGkL--AE~aaqhLkKGD~V~VsGR 136 (364)
+|+|+||||| +|||+|+|+ |+.+|.|+||+++. + +++||+|++||++ || +++||+||++|+|+||
T Consensus 146 lNkV~LiGrL-~DPElR~t~-G~~Va~FslAv~~~~~~~~~~e~~~~Tdw~~Vv~wgk~~~AE-i~~~L~KG~~V~VeGr 222 (257)
T 4dni_A 146 VNSVTLVGVV-HDIQSGFVY-EDAVTQFTLTTTSIDTTHPTQEVVVEKDHHTIRCFGELFSAE-VKQKVKEGNVVCVNGR 222 (257)
T ss_dssp EEEEEEEEEE-EEEEEEEET-TEEEEEEEEEEEEEECCCTTCSCEEEEEEEEEEEESHHHHHH-HHHHCCTTCEEEEEEE
T ss_pred cCEEEEEEEc-CCCEEEEeC-CcEEEEEEEEECCCccCCCCceEccceEEEEEEEECCccHHH-HHhhCCCCCEEEEEEE
Confidence 7999999999 999999999 99999999999751 2 5899999999999 99 8889999999999999
Q ss_pred eeeCCCCcC---CeEEEE-EEEe
Q 017902 137 LTADPPAIE---GQANVQ-VMVH 155 (364)
Q Consensus 137 L~s~syedk---~qt~~e-VvVe 155 (364)
|++++|+|+ .++.++ |.|+
T Consensus 223 L~tr~~~D~~G~kr~~~~vI~V~ 245 (257)
T 4dni_A 223 LRLSPQLEPSCNKHFYFPYIQVQ 245 (257)
T ss_dssp EEEEEEECSSSSCEEEEEEEEEC
T ss_pred EEeeeEEcCCCCEEEEEEEEEEE
Confidence 999999876 455555 4554
No 28
>4dni_A Fusion protein of RNA-editing complex proteins MP MP18; krepa3, krepa6, editosome, protein/RNA binding, protein BIND binding protein; 2.55A {Trypanosoma brucei}
Probab=99.71 E-value=1.8e-17 Score=157.44 Aligned_cols=92 Identities=11% Similarity=0.048 Sum_probs=77.8
Q ss_pred ccccceEEEEEEeCCCceEEECCCCcEEEEEEEEEcC-----CC-CCeeEEEEEec-hHHHHHHhhcCCCCeEEEEEEee
Q 017902 66 VKVANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHA-----AS-HSLWIPILFEG-DLAHIASSHLKKDDHVHIAGQLT 138 (364)
Q Consensus 66 p~l~NsV~LIGrLg~DPElr~T~~Gk~va~f~LAv~~-----~~-~T~wI~Vv~wG-kLAE~aaqhLkKGD~V~VsGRL~ 138 (364)
-+++|+|+|||||++| |+|||++|. ++.|+|++.. ++ .++||.|++|| ++||.|.+||+||++|+|+|||+
T Consensus 27 ~r~~N~viLiGrLtrd-ElRyT~~g~-~a~~~lav~~~~~~~ge~~~df~~vv~wg~k~AE~~~~yl~kG~~V~VeGrL~ 104 (257)
T 4dni_A 27 WRCVNHCVMLGVVQNI-QEGFVFEDK-VLQFTLITDFEGPSPGDPDKDFHTVRVFDSDYSSRVKEQLRDGEWFLVTGRLR 104 (257)
T ss_dssp SCCSEEEEEEEEEEEE-EEEEETTEE-EEEEEEEEECCCCCSSCCCEEEEEEEECSHHHHHHHHHHCCTTCEEEEEEEEE
T ss_pred hhcCcEEEEEEEEece-EEEECCCCC-EEEEEEEEEecCCCCCCCcccEEEEEEECCHHHHHHHHhccCCCEEEEEEEEE
Confidence 4789999999999999 999999994 6666666643 12 35788999999 99999999999999999999999
Q ss_pred eCCCCcC---CeEEEEEEEeeEEecc
Q 017902 139 ADPPAIE---GQANVQVMVHSLNLIE 161 (364)
Q Consensus 139 s~syedk---~qt~~eVvVe~v~FV~ 161 (364)
+ |+++ +++.++|+|.++.-+.
T Consensus 105 ~--~~~~dG~kr~~~evva~~v~~~~ 128 (257)
T 4dni_A 105 M--VPQYDGSMRKYYHYPVIQVHPGC 128 (257)
T ss_dssp E--EEEECSSSSSEEEEEEEEECTTT
T ss_pred E--eECCCCCcEEEEEEEEEEEEecC
Confidence 9 5432 7889999999887654
No 29
>3stb_C RNA-editing complex protein MP42; editosome, nanobody, single domain antibody, VH krepa3, krepa6, RNA binding protein-immune system complex; 2.50A {Trypanosoma brucei}
Probab=99.65 E-value=3.8e-16 Score=137.66 Aligned_cols=80 Identities=11% Similarity=0.119 Sum_probs=71.2
Q ss_pred cccceEEEEEEeCCCceEEECCCCcEEEEEEEEEcCC------CCCeeEEEEEec-hHHHHHHhhcCCCCeEEEEEEeee
Q 017902 67 KVANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAA------SHSLWIPILFEG-DLAHIASSHLKKDDHVHIAGQLTA 139 (364)
Q Consensus 67 ~l~NsV~LIGrLg~DPElr~T~~Gk~va~f~LAv~~~------~~T~wI~Vv~wG-kLAE~aaqhLkKGD~V~VsGRL~s 139 (364)
+.+|+|+|+|||+ ||+.+++. +..++.|+||++.. .+++||+|.+|| ++||.+.+||+||++|+|+|||++
T Consensus 42 r~vN~VvLmGRvt-dpq~ry~~-~~~Va~FtLAV~~~~~r~ge~~tdf~~V~vfGg~lAE~i~~ylkkG~rVlVeGRLrm 119 (148)
T 3stb_C 42 RCVNHCVMLGVVQ-NIQEGFVF-EDKVLQFTLITDFEGPSPGDPDKDFHTVRVFDSDYSSRVKEQLRDGEWFLVTGRLRM 119 (148)
T ss_dssp SCSEEEEEEEEEE-EEEEEEET-TEEEEEEEEEEECSSCCTTSCSEEEEEEEECSHHHHHHHHHHCCTTCEEEEEEEEEE
T ss_pred eecceEEEEEEec-CccccccC-CCcEEEEEEEEecCCCCCCCCccceEEEEEECChHHHHHHHHhcCCCEEEEEEEEEc
Confidence 5699999999996 99999995 88999999999762 246999999996 999999999999999999999999
Q ss_pred CCCCcC-CeE
Q 017902 140 DPPAIE-GQA 148 (364)
Q Consensus 140 ~syedk-~qt 148 (364)
.+|+++ ++.
T Consensus 120 n~~~d~~gkk 129 (148)
T 3stb_C 120 VPQYDGSMRK 129 (148)
T ss_dssp EEEEETTTTE
T ss_pred ceeECCCCCE
Confidence 999876 444
No 30
>4dka_C RNA-editing complex protein MP81; krepa1, VHH, single domain antibody, protein binding, RNA BI protein-immune system complex; 1.97A {Trypanosoma brucei} PDB: 4dk3_C 4dk6_C
Probab=97.45 E-value=0.0004 Score=57.92 Aligned_cols=73 Identities=18% Similarity=0.184 Sum_probs=52.6
Q ss_pred ceEEEEEEeCCCceEEECCCCcEEEEEEEEEcCC--CCCeeEEEEEechHH--HHHHhhcCCCCeEEEEEEeeeCC-CCc
Q 017902 70 NSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAA--SHSLWIPILFEGDLA--HIASSHLKKDDHVHIAGQLTADP-PAI 144 (364)
Q Consensus 70 NsV~LIGrLg~DPElr~T~~Gk~va~f~LAv~~~--~~T~wI~Vv~wGkLA--E~aaqhLkKGD~V~VsGRL~s~s-yed 144 (364)
.++.|+|+|. |++--+.. ...|.-|+|+++-. -+-++|.|.|+|+.+ +.+.+.|+.|+.|.|.|||++.. |+.
T Consensus 4 sn~vlvG~V~-DVQ~Gfl~-~~~V~Qftl~~d~e~~~eke~~tVRC~Gd~~~~~~lk~~lk~g~~v~V~GrLRm~p~~d~ 81 (105)
T 4dka_C 4 SNALMIGRIA-DVQHGFLG-AMTVTQYVLEVDGGASGEKEFIVIRCMGDNFPASLLKDQVKLGSRVLVQGTLRMNRHVDD 81 (105)
T ss_dssp CEEEEEEEEE-EEEEEEET-TEEEEEEEEEECC----CCEEEEEEEECC---------CCCTTCEEEEEEEEECCCEECT
T ss_pred cceEEEEEEE-Eeeecccc-cceEEEEEEEEeCCCCCcccEEEEEEcCccchHHHHHHHHhCCCEEEEEeEEEeeecccc
Confidence 5789999997 67776654 35588899988653 345999999999998 88899999999999999999975 443
No 31
>2k50_A Replication factor A related protein; uncharacterized protein, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=96.19 E-value=0.027 Score=45.80 Aligned_cols=71 Identities=13% Similarity=0.112 Sum_probs=54.4
Q ss_pred ceEEEEEEeCCCceEE--ECCCC--cEEEEEEEEEcCCCCCeeEEEEEechHHHHHHhhcCCCCeEEEEEEeeeCCCCcC
Q 017902 70 NSVNLIGHVDAPVQFQ--TSSDG--KHWAGTVIVQHAASHSLWIPILFEGDLAHIASSHLKKDDHVHIAGQLTADPPAIE 145 (364)
Q Consensus 70 NsV~LIGrLg~DPElr--~T~~G--k~va~f~LAv~~~~~T~wI~Vv~wGkLAE~aaqhLkKGD~V~VsGRL~s~syedk 145 (364)
..|.++|.|..--+++ .+.+| ..++.+.|+-. |--|++++|++.|+.. ..|+.|+.|+|.|......|.+.
T Consensus 17 ~~v~i~~~V~~~~~~~~~~~k~G~~~~~~~~~l~D~----TG~I~~t~w~~~~~~~-~~l~~G~vv~i~g~~v~~~f~g~ 91 (115)
T 2k50_A 17 AETPVTGRVMKISSPRTFTTRKGREGKLANVIIADD----TGELRAVFWTENIKLL-KKFREGDVIRIKDVNIRGGFGGR 91 (115)
T ss_dssp CEEEEEEEEEEECCCEECCCTTSSCCEEEEEEEEET----TEEEEEEEETTGGGGG-GTCCTTSEEEEEEEEECCCSSSS
T ss_pred CEeEEEEEEEECCCceEEEcCCCCEEEEEEEEEEeC----CCeEEEEEeCchhhhh-hcCCCCCEEEEEeeEEccccCCe
Confidence 4678999998653566 56677 67777877764 5589999999998855 67999999999998855556443
No 32
>3e0e_A Replication protein A; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Methanococcus maripaludis} PDB: 2k5v_A
Probab=95.42 E-value=0.041 Score=44.20 Aligned_cols=78 Identities=17% Similarity=0.212 Sum_probs=54.4
Q ss_pred ceEEEEEEeCCCceEEE--CCCCc--EEEEEEEEEcCCCCCeeEEEEEechHHHHHHhhcCCCCeEEEEEEeeeCCCCcC
Q 017902 70 NSVNLIGHVDAPVQFQT--SSDGK--HWAGTVIVQHAASHSLWIPILFEGDLAHIASSHLKKDDHVHIAGQLTADPPAIE 145 (364)
Q Consensus 70 NsV~LIGrLg~DPElr~--T~~Gk--~va~f~LAv~~~~~T~wI~Vv~wGkLAE~aaqhLkKGD~V~VsGRL~s~syedk 145 (364)
+.|+++|+|-.--+++. ..+|. .+..+.|+- +|--|++++|++.|+. .++.||.|.|.|+.+...
T Consensus 12 ~~v~i~~~V~~~~~~r~~~~~~G~~~~v~~~~l~D----eTG~I~~tlW~~~~~~---~i~~Gdvv~i~g~v~~~~---- 80 (97)
T 3e0e_A 12 LSGTINAEVVTAYPKKEFSRKDGTKGQLKSLFLKD----DTGSIRGTLWNELADF---EVKKGDIAEVSGYVKQGY---- 80 (97)
T ss_dssp EEEEEEEEEEEECCCEEEC----CCEEEEEEEEEE----TTEEEEEEEEGGGGGC---CCCTTCEEEEEEEEEEC-----
T ss_pred CcEEEEEEEEECCCceEEEcCCCCeeEEEEEEEEC----CCCcEEEEEECCcccc---ccCCCCEEEEEEEEEEcC----
Confidence 68999999987665654 44673 566666654 4779999999999986 699999999999875441
Q ss_pred CeEEEEEEEeeEEec
Q 017902 146 GQANVQVMVHSLNLI 160 (364)
Q Consensus 146 ~qt~~eVvVe~v~FV 160 (364)
..+++.+..-.-|
T Consensus 81 --~~~el~~g~~~~i 93 (97)
T 3e0e_A 81 --SGLEISVDNIGII 93 (97)
T ss_dssp ---CEEEEEEEEEEE
T ss_pred --CeEEEEECCCcEE
Confidence 1456666655444
No 33
>3dm3_A Replication factor A; probably plays AN essential for replication of the chromosome, DNA recombination and repair; 2.40A {Methanocaldococcus jannaschii}
Probab=95.23 E-value=0.061 Score=44.08 Aligned_cols=80 Identities=14% Similarity=0.271 Sum_probs=57.6
Q ss_pred ceEEEEEEeCCCceEEE--CCCCcE--EEEEEEEEcCCCCCeeEEEEEechHHHHHHhhcCCCCeEEEEEEeeeCCCCcC
Q 017902 70 NSVNLIGHVDAPVQFQT--SSDGKH--WAGTVIVQHAASHSLWIPILFEGDLAHIASSHLKKDDHVHIAGQLTADPPAIE 145 (364)
Q Consensus 70 NsV~LIGrLg~DPElr~--T~~Gk~--va~f~LAv~~~~~T~wI~Vv~wGkLAE~aaqhLkKGD~V~VsGRL~s~syedk 145 (364)
+.|+++|+|-.--+++. +.+|.. +..+.|+- +|--|+|++|++.|+. .+..||.|.|.|+.+....
T Consensus 15 ~~v~v~g~V~~~~~~r~~~~~~G~~~~v~~~~l~D----~TG~IrvtlW~~~a~~---~l~~Gdvv~i~g~vk~~~~--- 84 (105)
T 3dm3_A 15 MTATFEGEVISALPIKEFKRADGSIGKLKSFIVRD----ETGSIRVTLWDNLTDI---DVGRGDYVRVRGYIREGYY--- 84 (105)
T ss_dssp EEEEEEEEEEEEEEEEEEECTTSCEEEEEEEEEEE----TTEEEEEEEEGGGGGS---CCCTTCEEEEEEEEEECTT---
T ss_pred CeEEEEEEEEECCCceEEEcCCCCeeEEEEEEEEC----CCCcEEEEEECccccc---ccCCCCEEEEEEEEEEccC---
Confidence 68999999987766653 457754 55555554 3557999999999997 7999999999998877532
Q ss_pred CeEEEEEEEeeEEecc
Q 017902 146 GQANVQVMVHSLNLIE 161 (364)
Q Consensus 146 ~qt~~eVvVe~v~FV~ 161 (364)
+ .++|.+....-|+
T Consensus 85 g--~~eL~~g~~~~i~ 98 (105)
T 3dm3_A 85 G--GLECTANYVEILK 98 (105)
T ss_dssp S--SEEEEEEEEEEEE
T ss_pred C--CEEEEeCCceEEE
Confidence 1 2466665554443
No 34
>1o7i_A SSB, SSO2364, single stranded DNA binding protein; OB fold; 1.2A {Sulfolobus solfataricus} SCOP: b.40.4.3
Probab=94.08 E-value=0.17 Score=41.69 Aligned_cols=64 Identities=19% Similarity=0.178 Sum_probs=47.7
Q ss_pred cceEEEEEEeCCCceEE--ECCCCc-EEEEEEEEEcCCCCCeeEEEEEechHHHHHHhhcCCCCeEEEE-EEeeeC
Q 017902 69 ANSVNLIGHVDAPVQFQ--TSSDGK-HWAGTVIVQHAASHSLWIPILFEGDLAHIASSHLKKDDHVHIA-GQLTAD 140 (364)
Q Consensus 69 ~NsV~LIGrLg~DPElr--~T~~Gk-~va~f~LAv~~~~~T~wI~Vv~wGkLAE~aaqhLkKGD~V~Vs-GRL~s~ 140 (364)
.+.|.++|.|-.--+++ .+.+|+ .+..+.|+- +|--|++++|++.|+ .+..||.|+|. |++...
T Consensus 12 ~~~v~~~~~V~~~~~~~~~~~k~G~~~~~~~~l~D----~TG~I~~tlW~~~~~----~~~~G~vv~i~~g~v~~~ 79 (119)
T 1o7i_A 12 MESVNVTVRVLEASEARQIQTKNGVRTISEAIVGD----ETGRVKLTLWGKHAG----SIKEGQVVKIENAWTTAF 79 (119)
T ss_dssp CSSEEEEEEEEEECCCEEECCTTCCEEEEEEEEEE----TTEEEEEEEEGGGTT----CCCTTCEEEEEEEEEEEE
T ss_pred CCcEEEEEEEEECCCCeeEEecCCCEEEEEEEEEe----CCCEEEEEEECChhh----cCCCCCEEEEEeEEEEEe
Confidence 35688888886543333 567886 677777765 355699999999884 58999999999 887754
No 35
>1ynx_A Replication factor-A protein 1; canonical OB fold, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=92.44 E-value=0.23 Score=40.71 Aligned_cols=64 Identities=14% Similarity=0.028 Sum_probs=50.0
Q ss_pred cceEEEEEEeCCCceEEEC--CCC-cEEEEEEEEEcCCCCCeeEEEEEechHHHHHHhhcCCCCeEEEEEE
Q 017902 69 ANSVNLIGHVDAPVQFQTS--SDG-KHWAGTVIVQHAASHSLWIPILFEGDLAHIASSHLKKDDHVHIAGQ 136 (364)
Q Consensus 69 ~NsV~LIGrLg~DPElr~T--~~G-k~va~f~LAv~~~~~T~wI~Vv~wGkLAE~aaqhLkKGD~V~VsGR 136 (364)
++++.+.|||.+--++|.. .+| ..+..+.|+-+ +--|++++|+++|+.....|+.|+.++|+|-
T Consensus 14 ~~~w~I~~rV~~k~~~r~~~~~~~~g~~~~~~L~De----~G~I~at~~~~~~~~f~~~l~eG~vy~Is~~ 80 (114)
T 1ynx_A 14 QNVWTIKARVSYKGEIKTWHNQRGDGKLFNVNFLDT----SGEIRATAFNDFATKFNEILQEGKVYYVSKA 80 (114)
T ss_dssp TCCCEEEEEEEEEEEEEEEECSSCEEEEEEEEEEET----TEEEEEEECHHHHHHHHHHSCSSSEEEEESC
T ss_pred CCceEEEEEEEEeccceEEecCCCCceEEEEEEECC----CCeEEEEECHHHHHHHHhhcccCcEEEECCc
Confidence 5678999999987776543 233 34556666543 3399999999999999999999999999983
No 36
>2k75_A Uncharacterized protein TA0387; closed beta barrel, OB fold, structural genomics, PSI-2, protein structure initiative; NMR {Thermoplasma acidophilum}
Probab=91.84 E-value=0.43 Score=38.87 Aligned_cols=61 Identities=23% Similarity=0.221 Sum_probs=47.8
Q ss_pred cceEEEEEEeCCCceEEECCCCcE--EEEEEEEEcCCCCCeeEEEEEechHHHHHHhhcCCCCeEEEE-EEeeeC
Q 017902 69 ANSVNLIGHVDAPVQFQTSSDGKH--WAGTVIVQHAASHSLWIPILFEGDLAHIASSHLKKDDHVHIA-GQLTAD 140 (364)
Q Consensus 69 ~NsV~LIGrLg~DPElr~T~~Gk~--va~f~LAv~~~~~T~wI~Vv~wGkLAE~aaqhLkKGD~V~Vs-GRL~s~ 140 (364)
.+.|+++|.|-.--+.+.+.+|+. ++...|+- +|--|++++|++. |..||.|.|. |+....
T Consensus 13 ~~~v~v~~~V~~~~~~~~~k~G~~~~v~~~~l~D----eTG~I~~tlW~~~-------l~~Gdvv~i~ng~v~~~ 76 (106)
T 2k75_A 13 TPYVSVIGKITGIHKKEYESDGTTKSVYQGYIED----DTARIRISSFGKQ-------LQDSDVVRIDNARVAQF 76 (106)
T ss_dssp CSEEEEEEEEEEEEEEEEEETTEEEEEEEEEEEC----SSCEEEEEEESSC-------CCTTEEEEEEEEEEEEE
T ss_pred CceEEEEEEEEEccccccccCCCeeEEEEEEEEc----CCCeEEEEEEcCc-------cCCCCEEEEEeeEEeEE
Confidence 467899999887666666678874 66666664 4667999999998 9999999999 777653
No 37
>3f2b_A DNA-directed DNA polymerase III alpha chain; DNA polymerase C, DNA polymerase III; HET: DGT; 2.39A {Geobacillus kaustophilus} PDB: 3f2c_A* 3f2d_A*
Probab=88.84 E-value=2.7 Score=46.82 Aligned_cols=86 Identities=17% Similarity=0.133 Sum_probs=65.1
Q ss_pred cccceEEEEEEeCCCceEEECCCCcEEEEEEEEEcCCCCCeeEEEEEechHHHH--HHhhcCCCCeEEEEEEeeeCCCCc
Q 017902 67 KVANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAASHSLWIPILFEGDLAHI--ASSHLKKDDHVHIAGQLTADPPAI 144 (364)
Q Consensus 67 ~l~NsV~LIGrLg~DPElr~T~~Gk~va~f~LAv~~~~~T~wI~Vv~wGkLAE~--aaqhLkKGD~V~VsGRL~s~syed 144 (364)
.-.+.|++.|.|-. .|.+.+.+|+.+..|.|.- .|+-|.|..|-+-.+. +.+.+++|+.|.|.|.++.++|..
T Consensus 15 ~~~~~~~~~g~v~~-~~~~~~~~~~~~~~~~~td----~~~~~~~k~f~~~~~~~~~~~~~~~g~~~~~~g~~~~d~~~~ 89 (1041)
T 3f2b_A 15 EEERRVVVQGYVFD-AEVSELKSGRTLLTMKITD----YTNSILVKMFSRDKEDAELMSGVKKGMWVKVRGSVQNDTFVR 89 (1041)
T ss_dssp SCEEEEEEEEEEEE-EEEEECTTSCEEEEEEEEC----SSCEEEEEEECSSHHHHHHHHTCCTTCEEEEEEEEEEETTTT
T ss_pred cccceEEEEEEEEE-EEEEEccCCCEEEEEEEEe----CCCCEEEEEeecccchHHHHhcCCCCCEEEEEEEEEeccCCc
Confidence 34678999999885 8999999999887776653 4777999988664443 446799999999999999999875
Q ss_pred CCeEEEEEEEeeEEecc
Q 017902 145 EGQANVQVMVHSLNLIE 161 (364)
Q Consensus 145 k~qt~~eVvVe~v~FV~ 161 (364)
+ +.+.+.+|+-+.
T Consensus 90 ~----~~~~~~~~~~~~ 102 (1041)
T 3f2b_A 90 D----LVIIANDLNEIA 102 (1041)
T ss_dssp E----EEEEEEEEEEEC
T ss_pred c----eEEEeeeeEEec
Confidence 4 224455555454
No 38
>2hql_A Hypothetical protein Mg376 homolog; structural genomics, conserved hypothetical protein, GI:1673959, MPN554, OB fold; 2.00A {Mycoplasma pneumoniae}
Probab=88.83 E-value=5.9 Score=32.43 Aligned_cols=71 Identities=25% Similarity=0.169 Sum_probs=52.2
Q ss_pred cccceEEEEEEeCCCceEEECCCCcEEEEEEEEEcC--CCC--CeeEEEEEechHHHHHHhhcCCCCeEEEEEEeeeCC
Q 017902 67 KVANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHA--ASH--SLWIPILFEGDLAHIASSHLKKDDHVHIAGQLTADP 141 (364)
Q Consensus 67 ~l~NsV~LIGrLg~DPElr~T~~Gk~va~f~LAv~~--~~~--T~wI~Vv~wGkLAE~aaqhLkKGD~V~VsGRL~s~s 141 (364)
-|+|.|.|-|-+.. ...+- .+.....+|...+ ++. |+|+-+-+-|.||-.+.+|.++=.-|.|+|-|+++.
T Consensus 6 gMLN~V~LEG~IeS---~kWS~-kKTGF~VTIkQkR~FGer~FTDyyViYAN~QL~~ELEky~~k~k~isieG~L~TY~ 80 (110)
T 2hql_A 6 GMLNRVFLEGEIES---SCWSV-KKTGFLVTIKQMRFFGERLFTDYYVIYANGQLAYELEKHTKKYKTISIEGILRTYL 80 (110)
T ss_dssp -CCEEEEEEEEEEE---EEECT-TCSEEEEEEEEEEEETTEEEEEEEEEEEEHHHHHHHHHHHTTCSEEEEEEEEEEEE
T ss_pred ceEEEEEEeeeeeh---hcccc-cCceEEEEEeehhhhccccceeEEEEEECCeeehhHHHhhhhceEEEEeeehhhHH
Confidence 48999999998763 12222 2222333444444 344 589999999999999999999999999999999763
No 39
>1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A*
Probab=86.25 E-value=6.3 Score=40.04 Aligned_cols=86 Identities=16% Similarity=0.180 Sum_probs=58.9
Q ss_pred ceEEEEEEeCCCceEEECCCCcEEEEEEEEEcCCCCCeeEEEEEech----HH---HHHHhhcCCCCeEEEEEEeeeCCC
Q 017902 70 NSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAASHSLWIPILFEGD----LA---HIASSHLKKDDHVHIAGQLTADPP 142 (364)
Q Consensus 70 NsV~LIGrLg~DPElr~T~~Gk~va~f~LAv~~~~~T~wI~Vv~wGk----LA---E~aaqhLkKGD~V~VsGRL~s~sy 142 (364)
..|+|.|+|.+ +|. .|+.++++.|-. .+..|+|++-.+ +. ...++.|..||.|.|+|.+..+.-
T Consensus 37 ~~V~v~GwV~~---~R~--~g~~l~Fi~LrD----~~g~iQvv~~~~~~~~~~~~~~~~~~~l~~e~~V~V~G~v~~~~~ 107 (487)
T 1eov_A 37 KEVLFRARVHN---TRQ--QGATLAFLTLRQ----QASLIQGLVKANKEGTISKNMVKWAGSLNLESIVLVRGIVKKVDE 107 (487)
T ss_dssp CEEEEEEEEEE---EEE--CSSSEEEEEEEE----TTEEEEEEEECCSSSSSCHHHHHHHTTCCTTCEEEEEEEEEECSS
T ss_pred CEEEEEEEEEE---eec--cCCccEEEEEEE----CCccEEEEEeccccccccHHHHHHHhcCCCCCEEEEEEEEEeCCC
Confidence 35999999974 444 355445555553 245799988543 22 233467999999999999987742
Q ss_pred CcC--CeEEEEEEEeeEEeccCCC
Q 017902 143 AIE--GQANVQVMVHSLNLIEPTS 164 (364)
Q Consensus 143 edk--~qt~~eVvVe~v~FV~~k~ 164 (364)
... ..-.++|.|++|..|....
T Consensus 108 ~~~~~~~g~~El~~~~i~vl~~a~ 131 (487)
T 1eov_A 108 PIKSATVQNLEIHITKIYTISETP 131 (487)
T ss_dssp CCTTSSEEEEEEEEEEEEEEECCC
T ss_pred CCcCCCCCcEEEEEEEEEEeeccc
Confidence 222 2347999999999998654
No 40
>4gop_B Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=86.08 E-value=2.9 Score=34.95 Aligned_cols=86 Identities=9% Similarity=0.017 Sum_probs=54.9
Q ss_pred ccccCccccceEEEEEEeCCCceEEECCCCcEEEEEEEEEcCCCCCeeEEEEEechHHHH---HHhhcCCCCeEEEEEEe
Q 017902 61 EIPFQVKVANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAASHSLWIPILFEGDLAHI---ASSHLKKDDHVHIAGQL 137 (364)
Q Consensus 61 eI~~qp~l~NsV~LIGrLg~DPElr~T~~Gk~va~f~LAv~~~~~T~wI~Vv~wGkLAE~---aaqhLkKGD~V~VsGRL 137 (364)
.+...-.-++.|.|+|.|-. +. .+.....+.|. . .|--|.|.+|.+..+. ....+..|+.|.|.|+|
T Consensus 28 ~f~i~g~~i~~V~iVG~V~~---~~---~~~~~~~~~ld--D--~TG~I~~~~W~~~~~~~~~~~~~~~~g~yVrV~G~v 97 (136)
T 4gop_B 28 EFILDGAELGQLTFVAVVRN---IS---RNATNVAYSVE--D--GTGQIEVRQWLDSSSDDSSKASEIRNNVYVRVLGTL 97 (136)
T ss_dssp CCBSSSSBCCEEEEEEEEEE---EE---ECSSEEEEEEE--C--SSCEEEEEEECC--------CCSCCTTCEEEEEEEE
T ss_pred cEEECCEEEEEEEEEEEEEE---EE---ecCCeEEEEEE--C--CCCCEEEEEecccCCcccccccccCCCCEEEEEEEE
Confidence 34445566999999999874 21 12223334343 2 3557999999876653 34579999999999999
Q ss_pred eeCCCCcCCeEEEEEEEeeEEeccC
Q 017902 138 TADPPAIEGQANVQVMVHSLNLIEP 162 (364)
Q Consensus 138 ~s~syedk~qt~~eVvVe~v~FV~~ 162 (364)
+... + ..+|.+..|.-++.
T Consensus 98 ~~f~--g----~~qi~~~~ir~v~d 116 (136)
T 4gop_B 98 KSFQ--N----RRSISSGHMRPVID 116 (136)
T ss_dssp EEET--T----EEEEEESEEEECSS
T ss_pred EEeC--C----EEEEEEEEEEECCC
Confidence 8752 2 24677777777644
No 41
>3kdf_D Replication protein A 32 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_A 1quq_A 1l1o_B
Probab=84.09 E-value=4.4 Score=33.71 Aligned_cols=87 Identities=10% Similarity=0.043 Sum_probs=53.1
Q ss_pred ccccCccccceEEEEEEeCCCceEEECCCCcEEEEEEEEEcCCCCCe-eEEEEEechHHHH--HHhhcCCCCeEEEEEEe
Q 017902 61 EIPFQVKVANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAASHSL-WIPILFEGDLAHI--ASSHLKKDDHVHIAGQL 137 (364)
Q Consensus 61 eI~~qp~l~NsV~LIGrLg~DPElr~T~~Gk~va~f~LAv~~~~~T~-wI~Vv~wGkLAE~--aaqhLkKGD~V~VsGRL 137 (364)
.+-..-.-++.|.|+|.|-. +.. +.....+.|. +.|- -|.|..|.+..+. ....+..|+.|.|.|+|
T Consensus 23 ~f~i~g~~i~~V~iVG~V~~---~~~---~~~~~~~~ld----D~TG~~I~~~~W~~~~~~~~~~~~~~~g~yVrV~G~l 92 (132)
T 3kdf_D 23 VFRIGNVEISQVTIVGIIRH---AEK---APTNIVYKID----DMTAAPMDVRQWVDTDDTSSENTVVPPETYVKVAGHL 92 (132)
T ss_dssp CEEETTEECCEEEEEEEEEE---EEE---CSSEEEEEEE----CSSSSCEEEEEEC---------CCCCTTCEEEEEEEE
T ss_pred cEEECCEEEEEEEEEEEEEE---EEE---cCCeEEEEEE----CCCCCEEEEEEEccCCCcccccccccCCCEEEEEEEE
Confidence 34444455899999999874 211 2222333333 2455 8999999876543 24579999999999999
Q ss_pred eeCCCCcCCeEEEEEEEeeEEeccCC
Q 017902 138 TADPPAIEGQANVQVMVHSLNLIEPT 163 (364)
Q Consensus 138 ~s~syedk~qt~~eVvVe~v~FV~~k 163 (364)
+... ++ -+|.+..|.-++..
T Consensus 93 ~~f~--g~----~qi~~~~ir~v~d~ 112 (132)
T 3kdf_D 93 RSFQ--NK----KSLVAFKIMPLEDM 112 (132)
T ss_dssp EEET--TE----EEEEEEEEEECSST
T ss_pred EeEC--CE----EEEEEEEEEEcCCc
Confidence 9852 22 44677777766544
No 42
>2hpi_A DNA polymerase III alpha subunit; POL-beta-like nucleotidyltransferase fold, transferase; HET: DNA; 3.00A {Thermus aquaticus} PDB: 2hpm_A* 3e0d_A*
Probab=83.79 E-value=1.8 Score=49.05 Aligned_cols=79 Identities=18% Similarity=0.210 Sum_probs=40.5
Q ss_pred eEEEEEEeCCCceEEECCCCcEEEEEEEEEcCCCCCeeEEEEEechHHHHHHhhcCCCCeEEEEEEeeeCCCCcCCeEEE
Q 017902 71 SVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAASHSLWIPILFEGDLAHIASSHLKKDDHVHIAGQLTADPPAIEGQANV 150 (364)
Q Consensus 71 sV~LIGrLg~DPElr~T~~Gk~va~f~LAv~~~~~T~wI~Vv~wGkLAE~aaqhLkKGD~V~VsGRL~s~syedk~qt~~ 150 (364)
.|.+.|-|. ..+.+.|.+|+.++.++|.-. +--+.|++|.+.-+.....|..|..|.|.|+++.+. .+
T Consensus 1044 ~v~v~G~v~-~~~~~~Tk~G~~maf~tleD~----tg~~evvvf~~~~~~~~~~l~~~~~~~v~G~v~~~~-------~~ 1111 (1220)
T 2hpi_A 1044 KVLLSGMVE-EVVRKPTRSGGMMARFTLSDE----TGALEVVVFGRAYEGVSPKLKEDIPLLVLAEVEKGE-------EL 1111 (1220)
T ss_dssp EEEEEEEEC-CC------------CEEEEET----TEEEEEC-------------CTTCEEEEEEEEC------------
T ss_pred eEEEEEEEE-EEEEeecCCCCeEEEEEEEEC----CCCEEEEEcHHHHHHHHHHhccCCEEEEEEEEEECC-------Cc
Confidence 478888887 478888999999999999863 556999999999999999999999999999998542 36
Q ss_pred EEEEeeEEecc
Q 017902 151 QVMVHSLNLIE 161 (364)
Q Consensus 151 eVvVe~v~FV~ 161 (364)
+|+|++|.-++
T Consensus 1112 ~l~~~~i~~l~ 1122 (1220)
T 2hpi_A 1112 RVLAQAVWTLE 1122 (1220)
T ss_dssp CEEEEEEEEHH
T ss_pred EEEEeeeecHH
Confidence 88998887664
No 43
>1jmc_A Protein (replication protein A (RPA)); human ssDNA binding replication protein A(RPA), single stranded DNA-binding protein, protein-ssDNA complex; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 1fgu_A
Probab=78.61 E-value=5.3 Score=35.95 Aligned_cols=63 Identities=11% Similarity=0.012 Sum_probs=47.3
Q ss_pred cceEEEEEEeCCCceEEEC--CCC-cEEEEEEEEEcCCCCCeeEEEEEechHHHHHHhhcCCCCeEEEEE
Q 017902 69 ANSVNLIGHVDAPVQFQTS--SDG-KHWAGTVIVQHAASHSLWIPILFEGDLAHIASSHLKKDDHVHIAG 135 (364)
Q Consensus 69 ~NsV~LIGrLg~DPElr~T--~~G-k~va~f~LAv~~~~~T~wI~Vv~wGkLAE~aaqhLkKGD~V~VsG 135 (364)
.+.+.|.|||.+--++|.. ++| ..+..+.|+-. .- -|++++|+++|+.....|+.|+.++|++
T Consensus 18 ~~~w~I~~rV~~k~~~r~~~~~~~~g~~~~~~L~De---~G-~I~at~~~~~~~~~~~~l~~G~vy~i~~ 83 (246)
T 1jmc_A 18 QSKWTICARVTNKSQIRTWSNSRGEGKLFSLELVDE---SG-EIRATAFNEQVDKFFPLIEVNKVYYFSK 83 (246)
T ss_dssp CCCCEEEEEEEEECCCEEEECSSCEEEEEEEEEECS---SC-EEEEEEEHHHHHHHGGGCCTTCEEEEEC
T ss_pred CCceEEEEEEEEecccceeeCCCCCceEEEEEEECC---CC-eEEEEEChHHHHHhhhhcccCCEEEECC
Confidence 4567899999876666532 333 23455555532 22 7999999999999999999999999999
No 44
>4gop_C Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=77.39 E-value=3.5 Score=40.80 Aligned_cols=64 Identities=13% Similarity=0.018 Sum_probs=48.1
Q ss_pred cceEEEEEEeCCCceEEEC--CCC-cEEEEEEEEEcCCCCCeeEEEEEechHHHHHHhhcCCCCeEEEEEE
Q 017902 69 ANSVNLIGHVDAPVQFQTS--SDG-KHWAGTVIVQHAASHSLWIPILFEGDLAHIASSHLKKDDHVHIAGQ 136 (364)
Q Consensus 69 ~NsV~LIGrLg~DPElr~T--~~G-k~va~f~LAv~~~~~T~wI~Vv~wGkLAE~aaqhLkKGD~V~VsGR 136 (364)
.+++.|.|||..--++|.. ++| ..+..+.|+-. +--|++++|+++|+.....|+.|+.++|++-
T Consensus 13 ~~~w~I~~rV~~k~~ir~~~~~~~~g~~~~~~L~De----~G~I~at~~~~~~~~f~~~l~eG~vy~Is~~ 79 (444)
T 4gop_C 13 QNRWTIKARVTSKSDIRHWSNQRGEGKLFSVNLLDD----SGEIKATGFNDAVDRFYPLLQENHVYLISKA 79 (444)
T ss_dssp CCSCEEEEECCEECCCEEEECSSCEEEEEEEEEECS----SCEEEEEEETHHHHHHTTTCCTTCEEEEESC
T ss_pred CcceEEEEEEEEccCcceecCCCCCceEEEEEEEcC----CCEEEEEEeHHHHHHHHHheecCCEEEEcCC
Confidence 4678999999975555532 333 24555655532 2389999999999999999999999999984
No 45
>3kf6_A Protein STN1; OB fold, chromosomal protein, DNA-binding, nucleus, telomere; 1.65A {Schizosaccharomyces pombe}
Probab=76.17 E-value=21 Score=31.16 Aligned_cols=87 Identities=10% Similarity=0.172 Sum_probs=56.4
Q ss_pred cCccccceEEEEEEeCCCceEEECCCCcEEEEEEEEEcCCCCCeeEEEEEechH-H--HHHHhhcCCCCeEEEEEEeeeC
Q 017902 64 FQVKVANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAASHSLWIPILFEGDL-A--HIASSHLKKDDHVHIAGQLTAD 140 (364)
Q Consensus 64 ~qp~l~NsV~LIGrLg~DPElr~T~~Gk~va~f~LAv~~~~~T~wI~Vv~wGkL-A--E~aaqhLkKGD~V~VsGRL~s~ 140 (364)
|.-.-++.|.|+|.|.. .+-+ .+ ++.+.++.+. ..-|.|++|-+. + ......+..|+.|.|.|+|++.
T Consensus 42 ~~n~PI~~V~IvGiVv~-~~~~----~~---~~~ytIDD~T-G~~I~cv~w~~~~~~~~~~~~~l~~G~~VrV~G~v~~f 112 (159)
T 3kf6_A 42 WMGFPIRWIQIVGYIAA-IDIY----EG---KHVLTVDDCS-GMVLRVVFIIQDDFSMSKRAISMSPGNVVCVFGKINSF 112 (159)
T ss_dssp ETTEEECEEEEEEEEEE-EEEE----TT---EEEEEEECSS-SCEEEEEEEGGGCHHHHHHHTTCCTTCEEEEEEEEECS
T ss_pred ECCeEEEEEEEEEEEEE-EEEe----CC---EEEEEEecCC-CCeEEEEEEccCCCCcccccccCCCCCEEEEEEEEEee
Confidence 33334889999999976 2211 12 2444555322 137999999876 2 2334458999999999999875
Q ss_pred CCCcCCeEEEEEEEeeEEeccCCCc
Q 017902 141 PPAIEGQANVQVMVHSLNLIEPTSQ 165 (364)
Q Consensus 141 syedk~qt~~eVvVe~v~FV~~k~~ 165 (364)
. + .-+|.|+.|..++....
T Consensus 113 r--~----~rqI~~~~i~~v~d~n~ 131 (159)
T 3kf6_A 113 R--S----EVELIAQSFEELRDPND 131 (159)
T ss_dssp S--S----SCEEEEEEEEEECSTHH
T ss_pred C--C----EEEEEEEEEEECCCcHH
Confidence 3 1 24788888888865443
No 46
>3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA synthetase, tRNA ligase, AARS, translation, ATP-binding, nucleotide-binding; HET: 4AD; 2.83A {Entamoeba histolytica} PDB: 3m4q_A
Probab=75.79 E-value=9 Score=38.66 Aligned_cols=87 Identities=16% Similarity=0.169 Sum_probs=56.2
Q ss_pred cceEEEEEEeCCCceEEECCCCcEEEEEEEEEcCCCCCeeEEEEEec-hHHHH-HHhhcCCCCeEEEEEEeeeCCCCcCC
Q 017902 69 ANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAASHSLWIPILFEG-DLAHI-ASSHLKKDDHVHIAGQLTADPPAIEG 146 (364)
Q Consensus 69 ~NsV~LIGrLg~DPElr~T~~Gk~va~f~LAv~~~~~T~wI~Vv~wG-kLAE~-aaqhLkKGD~V~VsGRL~s~syedk~ 146 (364)
-..|.|.|+|.. +|. .|+-++++.|-. .+..|+|++-. ++.+. .+..|..||.|.|+|.+....-....
T Consensus 30 g~~V~v~Gwv~~---~R~--~Gk~~~Fi~LrD----~sg~iQvv~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~~~~~ 100 (456)
T 3m4p_A 30 GKLVTFKGWAYH---IRK--ARKTLIFVELRD----GSGYCQCVIFGKELCEPEKVKLLTRECSLEITGRLNAYAGKNHP 100 (456)
T ss_dssp SSEEEEEEEEEE---EEC--CSSSEEEEEEEC----SSCEEEEEEESTTTTCHHHHTTCCTTCEEEEEEEEECCCSSSCC
T ss_pred CCEEEEEEEEEE---Eec--CCCceEEEEEEe----CCccEEEEEecccchhhHHhhcCCCccEEEEEeEEEecCCcccC
Confidence 346999999974 333 444455554542 23469998876 33221 23479999999999999865321111
Q ss_pred e-----EEEEEEEeeEEeccCCC
Q 017902 147 Q-----ANVQVMVHSLNLIEPTS 164 (364)
Q Consensus 147 q-----t~~eVvVe~v~FV~~k~ 164 (364)
. -.++|.|+++..|....
T Consensus 101 ~~~~t~g~~El~~~~i~vl~~a~ 123 (456)
T 3m4p_A 101 PEIADILNLEMQVTEWKVIGESP 123 (456)
T ss_dssp CSCTTBCSSEEEEEEEEEEECCC
T ss_pred cccCCCCcEEEEEeEEEEEecCC
Confidence 1 35799999999987653
No 47
>3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding, phosphoprotein, polymorphism; HET: LYS ATP; 2.31A {Homo sapiens}
Probab=74.87 E-value=12 Score=38.39 Aligned_cols=79 Identities=13% Similarity=0.254 Sum_probs=55.1
Q ss_pred eEEEEEEeCCCceEEECCCCcEEEEEEEEEcCCCCCeeEEEEEechHH------HHHHhhcCCCCeEEEEEEeeeCCCCc
Q 017902 71 SVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAASHSLWIPILFEGDLA------HIASSHLKKDDHVHIAGQLTADPPAI 144 (364)
Q Consensus 71 sV~LIGrLg~DPElr~T~~Gk~va~f~LAv~~~~~T~wI~Vv~wGkLA------E~aaqhLkKGD~V~VsGRL~s~syed 144 (364)
.|.|.|+|.. +|.. |+.++++.|-. .+..|+|++-.+.. +.+.+.|..||.|.|+|.+.... +
T Consensus 57 ~V~v~Grv~~---~R~~--gkk~~F~~LrD----~sg~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~V~G~v~~t~-~- 125 (521)
T 3bju_A 57 TLKVAGRIHA---KRAS--GGKLIFYDLRG----EGVKLQVMANSRNYKSEEEFIHINNKLRRGDIIGVQGNPGKTK-K- 125 (521)
T ss_dssp CEEEEEEEEE---EEES--SSSEEEEEEEE----TTEEEEEEEEGGGSSCHHHHHHHHHHCCTTCEEEEEEEEEECT-T-
T ss_pred EEEEEEEEEE---EecC--CCCcEEEEEEE----CCEEEEEEEECCccCCHHHHHHHHhcCCCCCEEEEEEEEEecC-C-
Confidence 5999999974 4443 53355555543 24579999865421 22335799999999999998764 1
Q ss_pred CCeEEEEEEEeeEEeccCC
Q 017902 145 EGQANVQVMVHSLNLIEPT 163 (364)
Q Consensus 145 k~qt~~eVvVe~v~FV~~k 163 (364)
+ .++|.|++|..+.+.
T Consensus 126 -g--e~ei~~~~i~~l~~~ 141 (521)
T 3bju_A 126 -G--ELSIIPYEITLLSPC 141 (521)
T ss_dssp -C--CEEEEEEEEEEEECC
T ss_pred -C--CEEEEEeEEEEeecC
Confidence 2 489999999999754
No 48
>1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE; 2.30A {Sulfolobus tokodaii}
Probab=74.81 E-value=13 Score=37.21 Aligned_cols=80 Identities=14% Similarity=0.239 Sum_probs=55.5
Q ss_pred ceEEEEEEeCCCceEEECCCCcEEEEEEEEEcCCCCCeeEEEEEech--HHHHHHhhcCCCCeEEEEEEeeeCCCCcCCe
Q 017902 70 NSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAASHSLWIPILFEGD--LAHIASSHLKKDDHVHIAGQLTADPPAIEGQ 147 (364)
Q Consensus 70 NsV~LIGrLg~DPElr~T~~Gk~va~f~LAv~~~~~T~wI~Vv~wGk--LAE~aaqhLkKGD~V~VsGRL~s~syedk~q 147 (364)
..|.|.|+|.. +|.. |+ ++.+.|-. .+..|+|++-.+ ..+. ++.|..||.|.|+|.+.... .+.
T Consensus 17 ~~V~v~Gwv~~---~R~~--g~-~~F~~lrD----~~g~iQ~v~~~~~~~~~~-~~~l~~~~~v~v~G~v~~~~---~~~ 82 (429)
T 1wyd_A 17 KEVIWAGWVHL---LRDL--GG-KKFIILRD----KTGLGQVVVDKNSSAFGI-SQELTQESVIQVRGIVKADK---RAP 82 (429)
T ss_dssp CEEEEEEEEEE---EEEE--TT-EEEEEEEE----TTEEEEEEECTTSTTHHH-HTTCCTTCEEEEEEEEEECS---SSG
T ss_pred CEEEEEEEEEE---EecC--CC-eEEEEEEE----CCeeEEEEEeCChHHHHH-HHhCCCCCEEEEEEEEEecC---CCC
Confidence 35999999974 4443 55 44444443 345699988653 2233 36799999999999998763 122
Q ss_pred EEEEEEEeeEEeccCC
Q 017902 148 ANVQVMVHSLNLIEPT 163 (364)
Q Consensus 148 t~~eVvVe~v~FV~~k 163 (364)
..++|.|+++..+...
T Consensus 83 ~~~el~~~~~~vl~~~ 98 (429)
T 1wyd_A 83 RGIELHAEEITLLSKA 98 (429)
T ss_dssp GGEEEEEEEEEEEECC
T ss_pred ccEEEEEeEEEEeccC
Confidence 3589999999999765
No 49
>3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A* 3nen_A 1b8a_A*
Probab=74.68 E-value=23 Score=35.51 Aligned_cols=82 Identities=13% Similarity=0.164 Sum_probs=55.9
Q ss_pred ceEEEEEEeCCCceEEECCCCcEEEEEEEEEcCCCCCeeEEEEEechH----HHHHHhhcCCCCeEEEEEEeeeCCCCcC
Q 017902 70 NSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAASHSLWIPILFEGDL----AHIASSHLKKDDHVHIAGQLTADPPAIE 145 (364)
Q Consensus 70 NsV~LIGrLg~DPElr~T~~Gk~va~f~LAv~~~~~T~wI~Vv~wGkL----AE~aaqhLkKGD~V~VsGRL~s~syedk 145 (364)
-.|+|.|+|.. +|.. |+ ++.+.|-. .+..|+|++-.+. +-..++.|..||.|.|+|.+....-
T Consensus 17 ~~V~v~Gwv~~---~R~~--g~-~~Fi~LrD----~~g~iQ~v~~~~~~~~~~~~~~~~l~~~~~V~V~G~v~~~~~--- 83 (438)
T 3nem_A 17 QKVKVAGWVWE---VKDL--GG-IKFLWIRD----RDGIVQITAPKKKVDPELFKLIPKLRSEDVVAVEGVVNFTPK--- 83 (438)
T ss_dssp CEEEEEEEEEE---EEEE--TT-EEEEEEEE----TTEEEEEEEETTTSCHHHHHHGGGCCTTCEEEEEEEEEECTT---
T ss_pred CEEEEEEEEEE---EecC--CC-eEEEEEEE----CCeeEEEEEeCCcCCHHHHHHHhcCCCCCEEEEEEEEEeCCC---
Confidence 36999999974 4443 44 45554543 2446999987653 1223467999999999999987531
Q ss_pred CeEEEEEEEeeEEeccCCC
Q 017902 146 GQANVQVMVHSLNLIEPTS 164 (364)
Q Consensus 146 ~qt~~eVvVe~v~FV~~k~ 164 (364)
....++|.|++|..+....
T Consensus 84 ~~~~~el~~~~i~vl~~~~ 102 (438)
T 3nem_A 84 AKLGFEILPEKIVVLNRAE 102 (438)
T ss_dssp STTSEEEEEEEEEEEECBC
T ss_pred CCCcEEEEEEEEEEEecCC
Confidence 1124899999999987653
No 50
>1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics, ligase; HET: 4AD; 1.45A {Pyrococcus horikoshii} PDB: 1x55_A* 1x56_A
Probab=74.42 E-value=15 Score=36.75 Aligned_cols=81 Identities=20% Similarity=0.239 Sum_probs=55.6
Q ss_pred ceEEEEEEeCCCceEEECCCCcEEEEEEEEEcCCCCCeeEEEEEechHH----HHHHhhcCCCCeEEEEEEeeeCCCCcC
Q 017902 70 NSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAASHSLWIPILFEGDLA----HIASSHLKKDDHVHIAGQLTADPPAIE 145 (364)
Q Consensus 70 NsV~LIGrLg~DPElr~T~~Gk~va~f~LAv~~~~~T~wI~Vv~wGkLA----E~aaqhLkKGD~V~VsGRL~s~syedk 145 (364)
..|.|.|+|.. +|.. |+ ++.+.|-. .+..++|++-.+.. -..++.|..||.|.|+|.+.... .
T Consensus 17 ~~V~v~G~v~~---~R~~--g~-~~F~~lrD----~~g~iQ~v~~~~~~~~~~~~~~~~l~~~~~v~v~G~v~~~~---~ 83 (434)
T 1x54_A 17 KKVRLAGWVYT---NMRV--GK-KIFLWIRD----STGIVQAVVAKNVVGEETFEKAKKLGRESSVIVEGIVKADE---R 83 (434)
T ss_dssp CEEEEEEEEEE---EEEE--TT-EEEEEEEE----TTEEEEEEECHHHHCHHHHHHHHTCCTTCEEEEEEEEEECT---T
T ss_pred CEEEEEEEEEE---EecC--CC-eEEEEEEE----CCEEEEEEEECCcCCHHHHHHHhcCCCCCEEEEEEEEEecC---C
Confidence 35999999974 4443 55 44444443 34569999864321 12236799999999999998763 1
Q ss_pred CeEEEEEEEeeEEeccCC
Q 017902 146 GQANVQVMVHSLNLIEPT 163 (364)
Q Consensus 146 ~qt~~eVvVe~v~FV~~k 163 (364)
+...++|.|+++..+.+.
T Consensus 84 ~~~~~el~~~~~~vl~~~ 101 (434)
T 1x54_A 84 APGGAEVHVEKLEVIQAV 101 (434)
T ss_dssp SGGGEEEEEEEEEEEECC
T ss_pred CCccEEEEEeEEEEeecC
Confidence 223589999999999765
No 51
>2pi2_A Replication protein A 32 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2z6k_A 1dpu_A 1z1d_A
Probab=73.92 E-value=8.5 Score=35.85 Aligned_cols=55 Identities=11% Similarity=0.090 Sum_probs=37.5
Q ss_pred CCe-eEEEEEechHHHH--HHhhcCCCCeEEEEEEeeeCCCCcCCeEEEEEEEeeEEeccCCCc
Q 017902 105 HSL-WIPILFEGDLAHI--ASSHLKKDDHVHIAGQLTADPPAIEGQANVQVMVHSLNLIEPTSQ 165 (364)
Q Consensus 105 ~T~-wI~Vv~wGkLAE~--aaqhLkKGD~V~VsGRL~s~syedk~qt~~eVvVe~v~FV~~k~~ 165 (364)
.|- -|.|.+|.+..+. ....+..|+.|.|.|+|+... + ..+|.+..|.-|+..+.
T Consensus 97 ~TG~~I~~k~W~~~~~~~~~~~~~~~G~yVrV~G~v~~f~--g----~~qi~i~~ir~v~d~nE 154 (270)
T 2pi2_A 97 MTAAPMDVRQWVDTDDTSSENTVVPPETYVKVAGHLRSFQ--N----KKSLVAFKIMPLEDMNE 154 (270)
T ss_dssp SSSSCEEEEEECC-------CCCCCTTCEEEEEEEEEEET--T----EEEEEEEEEEECSCTHH
T ss_pred CCCCEEEEEEEcCcCcccchhhcCCCCCEEEEEEEEEecC--C----eeEEEEEEEEecCCHhH
Confidence 355 7999999876442 235689999999999999753 2 25677777777765443
No 52
>2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding, protein biosynthesis; HET: NSS; 1.90A {Brugia malayi} PDB: 2xti_A*
Probab=72.99 E-value=10 Score=37.95 Aligned_cols=82 Identities=13% Similarity=0.233 Sum_probs=53.4
Q ss_pred eEEEEEEeCCCceEEECCCCcEEEEEEEEEcCCCCCeeEEEEEechHHHH-HHhhcCCCCeEEEEEEeeeCCCCcCC-eE
Q 017902 71 SVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAASHSLWIPILFEGDLAHI-ASSHLKKDDHVHIAGQLTADPPAIEG-QA 148 (364)
Q Consensus 71 sV~LIGrLg~DPElr~T~~Gk~va~f~LAv~~~~~T~wI~Vv~wGkLAE~-aaqhLkKGD~V~VsGRL~s~syedk~-qt 148 (364)
.|+|.|+|.+ +|.. |+.++.+.|-. .+..++|++-+++.+. ....|..||.|.|+|.+..+. .+.. .-
T Consensus 13 ~V~v~Gwv~~---~R~~--Gk~~~Fi~LrD----~~g~iQvv~~~~~~~~~~~~~l~~~~~v~v~G~v~~~~-~~~~~~g 82 (435)
T 2xgt_A 13 RVCIKGWIHR---MRRQ--GKSLMFFILRD----GTGFLQVLLMDKLCQTYDALTVNTECTVEIYGAIKEVP-EGKEAPN 82 (435)
T ss_dssp EEEEEEEEEE---EEEC--TTSEEEEEEEC----SSCEEEEEEEGGGGSSHHHHHCCTTCEEEEEEEEEECC-------T
T ss_pred EEEEEEEEEE---eccc--CCCcEEEEEEE----CCceEEEEECCcchhHHHHhcCCCCCEEEEEEEEEecC-CCcCCCC
Confidence 5999999974 4443 43355554443 2446999987654321 112699999999999998753 1111 12
Q ss_pred EEEEEEeeEEeccC
Q 017902 149 NVQVMVHSLNLIEP 162 (364)
Q Consensus 149 ~~eVvVe~v~FV~~ 162 (364)
.++|.|+++..+..
T Consensus 83 ~~El~~~~~~vl~~ 96 (435)
T 2xgt_A 83 GHELIADFWKIIGN 96 (435)
T ss_dssp TEEEEEEEEEEEEC
T ss_pred cEEEEEEEEEEeec
Confidence 48999999999985
No 53
>3kf8_A Protein STN1; OB fold; 2.40A {Candida tropicalis mya-3404}
Probab=72.35 E-value=15 Score=34.10 Aligned_cols=99 Identities=10% Similarity=0.094 Sum_probs=62.7
Q ss_pred cccceEEEEEEeCCCceEEECCCCcEEEEEEEEEcCCC-CCeeEEEEEechHHHHHHhhc---CCCCeEEEEEEeeeCC-
Q 017902 67 KVANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAAS-HSLWIPILFEGDLAHIASSHL---KKDDHVHIAGQLTADP- 141 (364)
Q Consensus 67 ~l~NsV~LIGrLg~DPElr~T~~Gk~va~f~LAv~~~~-~T~wI~Vv~wGkLAE~aaqhL---kKGD~V~VsGRL~s~s- 141 (364)
.-+|.|.++|.|..--+.-....|.-..++.+.++... ....|.|.+--..+-.+.--+ --|..|.|.|.+....
T Consensus 83 hPI~~V~IvG~VVg~~~k~~r~~~~~~~~~~l~IDDsSG~~s~i~~k~~~~~~~~~gl~l~~~~~G~iV~VkG~i~~~r~ 162 (220)
T 3kf8_A 83 YPVNQINIFGKIVYEQYKEKEFNGVEESYVILVISDFIGIDSKIRVRLSQEQFKEVGLTLDKKNYGKIVELEGEIYNWYD 162 (220)
T ss_dssp EEECEEEEEEEEEEEEEECCBCSSCBCCEEEEEEECCCSSSCEEEEEEEHHHHHTTTCCTTSCCTTCEEEEEEEEEECCC
T ss_pred cccEEEEEEEEEEEEEEEeccccccccceEEEEEeCCCCCCceEEEEecHHHhhccCccccccCCCeEEEEEEEEEeecc
Confidence 33889999999987433322233444455666666532 245777876655433322112 2589999999999852
Q ss_pred -CCcCCeEEEEEEEeeEEeccCCCc
Q 017902 142 -PAIEGQANVQVMVHSLNLIEPTSQ 165 (364)
Q Consensus 142 -yedk~qt~~eVvVe~v~FV~~k~~ 165 (364)
+...+...-||.|+.|.+|+..+.
T Consensus 163 ~~~~~~~~~rei~ve~i~vl~~~~~ 187 (220)
T 3kf8_A 163 SINVSKKPDRELKVSKITVLSHRPD 187 (220)
T ss_dssp STTTTSCCCEEEEEEEEEEEESSSC
T ss_pred ccccccccceEEEEEEEEEeccCCC
Confidence 333355455999999999977644
No 54
>1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A*
Probab=72.18 E-value=15 Score=36.54 Aligned_cols=74 Identities=14% Similarity=0.298 Sum_probs=53.5
Q ss_pred ceEEEEEEeCCCceEEECCCCcEEEEEEEEEcCCCCCeeEEEEEechHHHHHHhhcC-CCCeEEEEEEeeeCCCCcCCeE
Q 017902 70 NSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAASHSLWIPILFEGDLAHIASSHLK-KDDHVHIAGQLTADPPAIEGQA 148 (364)
Q Consensus 70 NsV~LIGrLg~DPElr~T~~Gk~va~f~LAv~~~~~T~wI~Vv~wGkLAE~aaqhLk-KGD~V~VsGRL~s~syedk~qt 148 (364)
..|.|.|+|.+ +|.. |+ ++.+.|-. .+..|+|++-. +.|. .||.|.|+|.+....- +..
T Consensus 14 ~~V~v~Gwv~~---~R~~--g~-~~F~~lrD----~~g~iQ~v~~~-------~~l~~~~~~v~v~G~v~~~~~---~~~ 73 (422)
T 1n9w_A 14 QEVELLGFLHW---RRDL--GR-IQFLLLRD----RSGVVQVVTGG-------LKLPLPESALRVRGLVVENAK---APG 73 (422)
T ss_dssp SEEEEEEEEEE---EEEC--SS-EEEEEEEE----TTEEEEEEEES-------CCCCCTTCEEEEEEEEEECTT---STT
T ss_pred CEEEEEEEEEE---EecC--CC-eEEEEEEE----CCEEEEEEEEc-------cccCCCCCEEEEEEEEEecCC---CCc
Confidence 46999999974 4543 55 45554443 34559988754 6799 9999999999987641 122
Q ss_pred EEEEEEeeEEeccCC
Q 017902 149 NVQVMVHSLNLIEPT 163 (364)
Q Consensus 149 ~~eVvVe~v~FV~~k 163 (364)
.++|.|++|..+.+.
T Consensus 74 ~~el~~~~~~vl~~~ 88 (422)
T 1n9w_A 74 GLEVQAKEVEVLSPA 88 (422)
T ss_dssp SEEEEEEEEEEEECC
T ss_pred cEEEEEeEEEEeccC
Confidence 589999999999765
No 55
>3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, LI nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica}
Probab=70.00 E-value=24 Score=36.59 Aligned_cols=84 Identities=17% Similarity=0.232 Sum_probs=57.4
Q ss_pred ceEEEEEEeCCCceEEECCCCcEEEEEEEEEcCCCCCeeEEEEEec------hHHHHHHhhcCCCCeEEEEEEeeeCCCC
Q 017902 70 NSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAASHSLWIPILFEG------DLAHIASSHLKKDDHVHIAGQLTADPPA 143 (364)
Q Consensus 70 NsV~LIGrLg~DPElr~T~~Gk~va~f~LAv~~~~~T~wI~Vv~wG------kLAE~aaqhLkKGD~V~VsGRL~s~sye 143 (364)
-.|.|.|+|.+ +|. .|+ ++++.|-. .+..|+|++-. .+.+ .++.|..||.|.|+|.+....-.
T Consensus 63 ~~V~v~Gwv~~---~R~--~gk-l~Fi~LrD----~~g~iQ~v~~~~~~~~~~~~~-~~~~l~~es~V~V~G~v~~~~~~ 131 (548)
T 3i7f_A 63 KTVTIRARVQA---VRG--KGN-MVFLFLRK----GIYTCQALVMKSETISKEFVQ-FCQKISAESICDITGIVKAVEKP 131 (548)
T ss_dssp CEEEEEEEEEE---EEE--CSS-EEEEEEEE----TTEEEEEEEECSSSSCHHHHH-HHHTCCTTEEEEEEEEEEECSSC
T ss_pred CEEEEEEEEEE---Eec--CCC-eEEEEEEE----CCeeEEEEEECCCccCHHHHH-HHhCCCCCCEEEEEEEEEeCCcc
Confidence 45999999974 444 354 55555543 24588998875 1222 34679999999999999986422
Q ss_pred cC--CeEEEEEEEeeEEeccCCC
Q 017902 144 IE--GQANVQVMVHSLNLIEPTS 164 (364)
Q Consensus 144 dk--~qt~~eVvVe~v~FV~~k~ 164 (364)
.+ ..-.++|.|++|..|....
T Consensus 132 ~~~~~~~~~El~~~~i~vls~a~ 154 (548)
T 3i7f_A 132 IEKATQQDVEIHVTSIAVVSLAE 154 (548)
T ss_dssp CTTSSSCSEEEEEEEEEEEECCC
T ss_pred cccCCCCcEEEEEeEEEEEecCC
Confidence 22 2346999999999997653
No 56
>1wjj_A Hypothetical protein F20O9.120; DNA-binding protein-related, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.40.4.3
Probab=69.53 E-value=7.5 Score=33.66 Aligned_cols=61 Identities=11% Similarity=0.010 Sum_probs=43.2
Q ss_pred cceEEEEEEeCCCceEE---EC--CCC--------cEEEEEEEEEcCCCCCeeEEEEEechHHHHHHhhcCCCCeEEEEE
Q 017902 69 ANSVNLIGHVDAPVQFQ---TS--SDG--------KHWAGTVIVQHAASHSLWIPILFEGDLAHIASSHLKKDDHVHIAG 135 (364)
Q Consensus 69 ~NsV~LIGrLg~DPElr---~T--~~G--------k~va~f~LAv~~~~~T~wI~Vv~wGkLAE~aaqhLkKGD~V~VsG 135 (364)
.+.|+|+|+|-.--+.+ .. .+| ..++...|+- +|--|++++|++.|+ .|+.||.|.|.+
T Consensus 26 ~~~v~l~~kVl~~~~v~~~~~~~R~dG~~~~~~r~~~V~~~lVgD----eTG~I~ftlW~e~~~----~l~~Gd~v~i~n 97 (145)
T 1wjj_A 26 TTGHTLTVKVIEANIVVPVTRKTRPASSLSRPSQPSRIVECLIGD----ETGCILFTARNDQVD----LMKPGATVILRN 97 (145)
T ss_dssp CCCEEEEEEEEEEEECCSSSSCCSCSSCCSSCCCCCCCEEEEEEC----SSCEEEEEECTTHHH----HTCTTCEEEEEE
T ss_pred CCceEEEEEEEEcccccccccccccCCccccccCCceEEEEEEEc----CCcEEEEEEecCCcC----cCCCCCEEEEec
Confidence 56789999886533332 12 234 2577776664 578899999999876 378999999987
Q ss_pred Ee
Q 017902 136 QL 137 (364)
Q Consensus 136 RL 137 (364)
-.
T Consensus 98 a~ 99 (145)
T 1wjj_A 98 SR 99 (145)
T ss_dssp EE
T ss_pred cE
Confidence 43
No 57
>3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein biosynthesis, AMI tRNA synthetase, ATP-binding, magnesium; HET: B4P LYN; 1.80A {Geobacillus stearothermophilus} PDB: 3e9h_A* 3e9i_A*
Probab=65.51 E-value=31 Score=35.09 Aligned_cols=78 Identities=18% Similarity=0.180 Sum_probs=54.2
Q ss_pred eEEEEEEeCCCceEEECCCCcEEEEEEEEEcCCCCCeeEEEEEech-HHH---HHHhhcCCCCeEEEEEEeeeCCCCcCC
Q 017902 71 SVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAASHSLWIPILFEGD-LAH---IASSHLKKDDHVHIAGQLTADPPAIEG 146 (364)
Q Consensus 71 sV~LIGrLg~DPElr~T~~Gk~va~f~LAv~~~~~T~wI~Vv~wGk-LAE---~aaqhLkKGD~V~VsGRL~s~syedk~ 146 (364)
.|.|.|+|.. +|.. |+ ++.+.|-. .+..|+|++-.+ +.+ ...+.|..||.|.|+|.+.... + +
T Consensus 58 ~V~v~Gwv~~---~R~~--gk-~~F~~LrD----~sg~iQvv~~~~~~~~~~~~~~~~l~~g~~v~V~G~v~~~~-~--g 124 (493)
T 3a74_A 58 EVAVAGRIMT---KRGM--GK-AGFAHIQD----VTGQIQIYVRQDDVGEQQYELFKISDLGDIVGVRGTMFKTK-V--G 124 (493)
T ss_dssp EEEEEEEEEE---EEEE--TT-EEEEEEEE----TTEEEEEEEEHHHHHHHHHHHHHHCCTTCEEEEEEEEEECT-T--C
T ss_pred EEEEEEEEEE---EecC--CC-cEEEEEEE----CCEeEEEEEECCcCCHHHHHHHhcCCCCCEEEEEEEEEeCC-C--C
Confidence 5999999974 4443 45 34444443 245799998654 222 2336799999999999998752 1 2
Q ss_pred eEEEEEEEeeEEeccCC
Q 017902 147 QANVQVMVHSLNLIEPT 163 (364)
Q Consensus 147 qt~~eVvVe~v~FV~~k 163 (364)
.++|.|++|..+.+.
T Consensus 125 --e~ei~~~~i~vl~~~ 139 (493)
T 3a74_A 125 --ELSIKVSSYEFLTKA 139 (493)
T ss_dssp --CEEEEEEEEEEEECC
T ss_pred --cEEEEEEEEEEcccc
Confidence 489999999999765
No 58
>1jmc_A Protein (replication protein A (RPA)); human ssDNA binding replication protein A(RPA), single stranded DNA-binding protein, protein-ssDNA complex; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 1fgu_A
Probab=63.11 E-value=29 Score=30.98 Aligned_cols=67 Identities=16% Similarity=0.092 Sum_probs=40.1
Q ss_pred eEEEEEEeCCC--ce-EEECCCCcEEEEEEEEEcCCCCCe-eEEEEEechHHHHHHhhcCCCCeEEEEEEeeeCCC
Q 017902 71 SVNLIGHVDAP--VQ-FQTSSDGKHWAGTVIVQHAASHSL-WIPILFEGDLAHIASSHLKKDDHVHIAGQLTADPP 142 (364)
Q Consensus 71 sV~LIGrLg~D--PE-lr~T~~Gk~va~f~LAv~~~~~T~-wI~Vv~wGkLAE~aaqhLkKGD~V~VsGRL~s~sy 142 (364)
.|.+||.|..= ++ +..-.+|+......+... +++. -|+|++||+.|+.+. ...|+.|.+.|-.. ..|
T Consensus 140 ~vDViG~V~~v~~~~~~~~k~~g~~~~~r~~~l~--D~sg~~i~~tLWg~~a~~~~--~~~~~vv~i~~~~v-~~f 210 (246)
T 1jmc_A 140 LVDIIGICKSYEDATKITVRSNNREVAKRNIYLM--DTSGKVVTATLWGEDADKFD--GSRQPVLAIKGARV-SDF 210 (246)
T ss_dssp EEEEEEEEEEECCCEEEEETTTTEEEEEEEEEEE--CTTCCEEEEEEEHHHHHHCC--CTTCCEEEEEEEEE-ECT
T ss_pred ceeEEEEEEEecCeEEEEEecCCCccEEEEEEEE--CCCCCEEEEEEEchhhhhcc--cCCCCEEEEEEEEE-Eec
Confidence 48889988632 22 222225654333333222 1343 599999999999764 57888887777433 335
No 59
>1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme, flexible domains, ligase; 2.01A {Thermus thermophilus} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A
Probab=62.58 E-value=23 Score=36.81 Aligned_cols=83 Identities=14% Similarity=0.157 Sum_probs=55.5
Q ss_pred eEEEEEEeCCCceEEECCCCcEEEEEEEEEcCCCCCeeEEEEEechH-HHHHHhhcCCCCeEEEEEEeeeCCCCcC---C
Q 017902 71 SVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAASHSLWIPILFEGDL-AHIASSHLKKDDHVHIAGQLTADPPAIE---G 146 (364)
Q Consensus 71 sV~LIGrLg~DPElr~T~~Gk~va~f~LAv~~~~~T~wI~Vv~wGkL-AE~aaqhLkKGD~V~VsGRL~s~syedk---~ 146 (364)
.|+|.|+|.+ +|.. |+ ++++.|-. .+..++|++-.+. +-..++.|..||.|.|+|.+..+. ..+ .
T Consensus 18 ~V~l~GwV~~---~R~~--G~-~~Fi~LrD----~~g~iQvv~~~~~~~~~~~~~l~~e~~V~V~G~v~~~~-~~~~~~~ 86 (580)
T 1l0w_A 18 EVVLEGWVNR---RRDL--GG-LIFLDLRD----REGLVQLVAHPASPAYATAERVRPEWVVRAKGLVRLRP-EPNPRLA 86 (580)
T ss_dssp EEEEEEEEEE---EEEC--SS-CEEEEEEE----TTEEEEEEECTTSTTHHHHTTCCTTCEEEEEEEEEECS-SCCTTST
T ss_pred EEEEEEEEEE---EecC--CC-eEEEEEEE----CCeeEEEEEeCChhHHHHHhcCCCCcEEEEEEEEEcCC-CcCccCC
Confidence 5999999974 4443 43 34444433 2456888886542 112346799999999999998875 211 1
Q ss_pred eEEEEEEEeeEEeccCCC
Q 017902 147 QANVQVMVHSLNLIEPTS 164 (364)
Q Consensus 147 qt~~eVvVe~v~FV~~k~ 164 (364)
.-.++|.|++|..+....
T Consensus 87 ~ge~Ei~~~~i~vl~~a~ 104 (580)
T 1l0w_A 87 TGRVEVELSALEVLAEAK 104 (580)
T ss_dssp TTTEEEEEEEEEEEECCC
T ss_pred CccEEEEEeEEEEeccCc
Confidence 224899999999997653
No 60
>3au7_A TIAS, putative uncharacterized protein; ATP hydrolysis, RNA binding protein; 2.60A {Archaeoglobus fulgidus} PDB: 3amt_A* 3amu_A*
Probab=62.49 E-value=48 Score=33.21 Aligned_cols=78 Identities=17% Similarity=0.069 Sum_probs=55.8
Q ss_pred cccceEEEEEEeCCCceEEECCCCcEEEEEEEEEcCCCCCeeEEEEEec--hHHHHHHhhcCCCCeEEEEEEeeeCCCCc
Q 017902 67 KVANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAASHSLWIPILFEG--DLAHIASSHLKKDDHVHIAGQLTADPPAI 144 (364)
Q Consensus 67 ~l~NsV~LIGrLg~DPElr~T~~Gk~va~f~LAv~~~~~T~wI~Vv~wG--kLAE~aaqhLkKGD~V~VsGRL~s~syed 144 (364)
+.+-++.+.|.|...|... .+|-. .|.|-. ++.-|+|++|. +-...+...|..||.|.|.|.+...
T Consensus 282 ~~~~~~~v~G~V~~~P~~~--~GGHV--~f~l~d----~~~~i~c~ayeptk~fr~~vr~L~~GD~V~v~G~v~~g---- 349 (402)
T 3au7_A 282 ENYRSYRLRGRVTLEPYDI--EGGHV--FFEIDT----KFGSVKCAAFEPTKQFRNVIRLLRKGDVVEVYGSMKKD---- 349 (402)
T ss_dssp CTTCEEEEEEEEEEEEEEE--TTTEE--EEEEEE----TTEEEEEEECGGGTTHHHHHTTCCTTCEEEEEEEEETT----
T ss_pred ccCceEEEEEEEecCcEec--cCceE--EEEEEc----CCCEEEEEEEccchHHHHHHhcCCCCCEEEEEEeecCC----
Confidence 4577899999999766553 34433 455543 36679999999 4455666779999999999997752
Q ss_pred CCeEEEEEEEeeEEeccC
Q 017902 145 EGQANVQVMVHSLNLIEP 162 (364)
Q Consensus 145 k~qt~~eVvVe~v~FV~~ 162 (364)
.|.++.|.-+.-
T Consensus 350 ------tLnvEk~~v~~l 361 (402)
T 3au7_A 350 ------TINLEKIQIVEL 361 (402)
T ss_dssp ------EEEEEEEEEEEC
T ss_pred ------EEEEEEEEEccc
Confidence 577777776643
No 61
>1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex; HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A* 1eqr_A*
Probab=62.13 E-value=31 Score=35.86 Aligned_cols=84 Identities=19% Similarity=0.311 Sum_probs=56.1
Q ss_pred eEEEEEEeCCCceEEECCCCcEEEEEEEEEcCCCCCeeEEEEEechHHHH--HHhhcCCCCeEEEEEEeeeCCCC--c-C
Q 017902 71 SVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAASHSLWIPILFEGDLAHI--ASSHLKKDDHVHIAGQLTADPPA--I-E 145 (364)
Q Consensus 71 sV~LIGrLg~DPElr~T~~Gk~va~f~LAv~~~~~T~wI~Vv~wGkLAE~--aaqhLkKGD~V~VsGRL~s~sye--d-k 145 (364)
.|+|.|+|.+ +|.. |+ ++++.|-. .+..++|++-.+..+. .++.|..||.|.|+|.+..+.-. . +
T Consensus 17 ~V~l~GwV~~---~R~~--G~-~~Fi~LrD----~~g~iQvv~~~~~~~~~~~~~~l~~e~~V~V~G~v~~~~~~~~n~~ 86 (585)
T 1c0a_A 17 QVTLCGWVNR---RRDL--GS-LIFIDMRD----REGIVQVFFDPDRADALKLASELRNEFCIQVTGTVRARDEKNINRD 86 (585)
T ss_dssp EEEEEEEEEE---EEEC--SS-CEEEEEEE----TTEEEEEEECGGGHHHHHHHTTCCTTCEEEEEEEEEECCTTTCCTT
T ss_pred EEEEEEEEEE---EecC--CC-cEEEEEEE----CCeeEEEEEeCCchHHHHHHhcCCCCCEEEEEeEEEccCccccccc
Confidence 5999999974 4443 43 34444443 2456999986554322 34679999999999999876321 1 1
Q ss_pred -CeEEEEEEEeeEEeccCCC
Q 017902 146 -GQANVQVMVHSLNLIEPTS 164 (364)
Q Consensus 146 -~qt~~eVvVe~v~FV~~k~ 164 (364)
..-.++|.|++|..+....
T Consensus 87 ~~~geiEl~~~~i~vl~~a~ 106 (585)
T 1c0a_A 87 MATGEIEVLASSLTIINRAD 106 (585)
T ss_dssp STTTTEEEEEEEEEEEECCC
T ss_pred CCCccEEEEEeEEEEEeccC
Confidence 1224899999999998654
No 62
>2kbn_A Conserved protein; nucleic acid binding protein, beta barrel, structural genomics, PSI-2, protein structure initiative; NMR {Methanosarcina mazei} PDB: 2ken_A
Probab=61.61 E-value=37 Score=27.26 Aligned_cols=62 Identities=8% Similarity=-0.046 Sum_probs=42.6
Q ss_pred cceEEEEEEeCCCceEEECCCCcEEEEEEEEEcCCCCCeeEEEEEechHHHHHHhhcCCCCeEEEE-EEeeeC
Q 017902 69 ANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAASHSLWIPILFEGDLAHIASSHLKKDDHVHIA-GQLTAD 140 (364)
Q Consensus 69 ~NsV~LIGrLg~DPElr~T~~Gk~va~f~LAv~~~~~T~wI~Vv~wGkLAE~aaqhLkKGD~V~Vs-GRL~s~ 140 (364)
...|.|+|+|-. +....+|......+|+- +|--|++++|++- .+..++.||.|.|. |.....
T Consensus 15 ~~~v~v~~~V~~---~~~~~~~~~~~~~~l~D----eTG~I~~t~W~~~---~~~~~~~G~~V~i~n~~v~~~ 77 (109)
T 2kbn_A 15 GQWANLKAKVIQ---LWENTHESISQVGLLGD----ETGIIKFTIWKNA---ELPLLEQGESYLLRSVVVGEY 77 (109)
T ss_dssp TCEEEEEEEEEE---EEECCCSSEEEEEEEEC----TTCCEEEEEEGGG---CCCCCCTTCEEEEEEEEEEEE
T ss_pred CCcEEEEEEEEE---eEcCCCCeEEEEEEEEC----CCCeEEEEEECcc---cccccCCCCEEEEEEEEEEEE
Confidence 467899998864 32334455544444443 4668999999943 23579999999999 677664
No 63
>1e1o_A Lysyl-tRNA synthetase, heat inducible; ligase, aminoacyl-tRNA synthetase, protein biosynthesis; HET: LYS; 2.12A {Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A* 1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A
Probab=59.73 E-value=63 Score=32.98 Aligned_cols=78 Identities=17% Similarity=0.199 Sum_probs=53.8
Q ss_pred eEEEEEEeCCCceEEECCCCcEEEEEEEEEcCCCCCeeEEEEEech-HHH---H-HHhhcCCCCeEEEEEEeeeCCCCcC
Q 017902 71 SVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAASHSLWIPILFEGD-LAH---I-ASSHLKKDDHVHIAGQLTADPPAIE 145 (364)
Q Consensus 71 sV~LIGrLg~DPElr~T~~Gk~va~f~LAv~~~~~T~wI~Vv~wGk-LAE---~-aaqhLkKGD~V~VsGRL~s~syedk 145 (364)
.|+|.|+|-. +|.. |+ ++++.|-. .+..|+|++-.+ +.+ . ..+.|..||.|.|+|.+.... +
T Consensus 66 ~V~v~Gwv~~---~R~~--gk-~~F~~LrD----~sg~iQvv~~~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~-~-- 132 (504)
T 1e1o_A 66 EVSVAGRMMT---RRIM--GK-ASFVTLQD----VGGRIQLYVARDSLPEGVYNDQFKKWDLGDIIGARGTLFKTQ-T-- 132 (504)
T ss_dssp EEEEEEEEEE---EEEE--TT-EEEEEEEE----TTEEEEEEEETTTSSTTHHHHTGGGCCTTCEEEEEEEEEECT-T--
T ss_pred EEEEEEEEEE---EecC--CC-cEEEEEEE----CCeeEEEEEECCcCCHHHHHHHHhcCCCCCEEEEEEEEEecC-C--
Confidence 5999999974 4443 44 34444433 245799988644 211 1 346799999999999998752 1
Q ss_pred CeEEEEEEEeeEEeccCC
Q 017902 146 GQANVQVMVHSLNLIEPT 163 (364)
Q Consensus 146 ~qt~~eVvVe~v~FV~~k 163 (364)
+ .++|.|++|..+...
T Consensus 133 g--e~ei~~~~i~vl~~a 148 (504)
T 1e1o_A 133 G--ELSIHCTELRLLTKA 148 (504)
T ss_dssp C--CEEEEEEEEEEEECC
T ss_pred c--eEEEEEEEEEEeccc
Confidence 2 489999999999764
No 64
>4hik_A Protection of telomeres protein 1; specificity, plasticity, promiscuity, OB-fold, ssDNA binding stranded telomeric DNA; HET: DNA; 1.64A {Schizosaccharomyces pombe} PDB: 4hid_A* 4him_A* 4hio_A* 4hj5_A* 4hj7_A* 4hj8_A* 4hj9_A* 4hja_A*
Probab=57.36 E-value=7.8 Score=33.55 Aligned_cols=27 Identities=15% Similarity=0.142 Sum_probs=24.8
Q ss_pred eEEEEEechHHHHHHhhcCCCCeEEEE
Q 017902 108 WIPILFEGDLAHIASSHLKKDDHVHIA 134 (364)
Q Consensus 108 wI~Vv~wGkLAE~aaqhLkKGD~V~Vs 134 (364)
=++|++|+.-|..|.++|+.||.|.+.
T Consensus 66 tlqVtlwd~ha~~ar~~lk~Gd~v~L~ 92 (143)
T 4hik_A 66 SIRCILWDEHDFYCRNYIKEGDYVVMK 92 (143)
T ss_dssp CEEEEECHHHHHHHTTTCCTTCEEEEE
T ss_pred EEEEEEECcHHHHHHhhCCCCCEEEEE
Confidence 489999999999999999999999874
No 65
>4ex5_A Lysine--tRNA ligase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LYS; 2.40A {Burkholderia thailandensis}
Probab=56.27 E-value=52 Score=33.96 Aligned_cols=78 Identities=19% Similarity=0.135 Sum_probs=52.9
Q ss_pred eEEEEEEeCCCceEEECCCCcEEEEEEEEEcCCCCCeeEEEEEechH-HH---HHHhhcCCCCeEEEEEEeeeCCCCcCC
Q 017902 71 SVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAASHSLWIPILFEGDL-AH---IASSHLKKDDHVHIAGQLTADPPAIEG 146 (364)
Q Consensus 71 sV~LIGrLg~DPElr~T~~Gk~va~f~LAv~~~~~T~wI~Vv~wGkL-AE---~aaqhLkKGD~V~VsGRL~s~syedk~ 146 (364)
.|.|.|+|-. +|.. |+ ++++.|- + .+--|+|++-.+. .+ ...+.|..||.|.|+|.+.... + +
T Consensus 88 ~V~v~GwV~~---~R~~--Gk-~~Fi~Lr-D---~sg~iQvv~~~~~~~~~~~~~~~~l~~gd~V~V~G~v~~t~-~--g 154 (529)
T 4ex5_A 88 EVAIAGRMML---KRVM--GK-ASFATVQ-D---GSGQIQFFVTPADVGAETYDAFKKWDLGDIVAARGVLFRTN-K--G 154 (529)
T ss_dssp EEEEEEEEEE---EEEE--TT-EEEEEEE-C---SSCEEEEEECHHHHCHHHHHHHHTCCTTCEEEEEEEEEECT-T--S
T ss_pred EEEEEEEEEe---eecC--CC-eEEEEEE-e---CCeeEEEEEECCcCCHHHHHHHhcCCCCCEEEEEEEEEEcC-C--C
Confidence 5999999974 4443 55 3444333 2 2347888886542 11 2345699999999999998642 1 2
Q ss_pred eEEEEEEEeeEEeccCC
Q 017902 147 QANVQVMVHSLNLIEPT 163 (364)
Q Consensus 147 qt~~eVvVe~v~FV~~k 163 (364)
.++|.|++|..|.+.
T Consensus 155 --elel~~~~i~vLs~a 169 (529)
T 4ex5_A 155 --ELSVKCTQLRLLAKA 169 (529)
T ss_dssp --CEEEEEEEEEEEECC
T ss_pred --cEEEEEEEEEEEecC
Confidence 488999999998765
No 66
>2vl6_A SSO MCM N-TER, minichromosome maintenance protein MCM; helicase, hydrolase, zinc-finger, ATP-binding, DNA-BIND ssDNA binding; 2.8A {Sulfolobus solfataricus}
Probab=54.17 E-value=30 Score=31.80 Aligned_cols=52 Identities=19% Similarity=0.300 Sum_probs=37.1
Q ss_pred CCeeEEEEEechHHHHHHhhcCCCCeEEEEEEeeeCCCC--c-CC--eEEEEEEEeeEEec
Q 017902 105 HSLWIPILFEGDLAHIASSHLKKDDHVHIAGQLTADPPA--I-EG--QANVQVMVHSLNLI 160 (364)
Q Consensus 105 ~T~wI~Vv~wGkLAE~aaqhLkKGD~V~VsGRL~s~sye--d-k~--qt~~eVvVe~v~FV 160 (364)
-+--+.|.+-++|.+ .++.||+|.|.|-+...... . .. ...+-|.|.+|..+
T Consensus 209 ~Prsi~v~l~~dLvd----~~~PGDrV~vtGI~~~~~~~~~~~~~~~~~~~yl~an~I~~~ 265 (268)
T 2vl6_A 209 LPRQLEIILEDDLVD----SARPGDRVKVTGILDIKQDSPVKRGSRAVFDIYMKVSSIEVS 265 (268)
T ss_dssp CCCEEEEEEEGGGTT----SSCTTCEEEEEEEEEEECSSTTCCSSCCEEEEEEEEEEEEEC
T ss_pred CCcEEEEEEccCccC----cccCCCEEEEEEEEEEeecccccCCCceEEEEEEEEEEEEEe
Confidence 357899999999976 56999999999999876543 1 22 33445566666554
No 67
>1xjv_A Protection of telomeres 1; protein-DNA complex, single-stranded DNA, transcription/DNA complex; 1.73A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 3kjo_A 3kjp_A
Probab=43.79 E-value=27 Score=32.72 Aligned_cols=73 Identities=18% Similarity=0.053 Sum_probs=49.7
Q ss_pred cceEEEEEEeCCCceEEECCCCcEEEEEEEEEcCCCCCeeEEEEEechHHHHHHhhcCCCCeEEEEEEeeeCCCCcC
Q 017902 69 ANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAASHSLWIPILFEGDLAHIASSHLKKDDHVHIAGQLTADPPAIE 145 (364)
Q Consensus 69 ~NsV~LIGrLg~DPElr~T~~Gk~va~f~LAv~~~~~T~wI~Vv~wGkLAE~aaqhLkKGD~V~VsGRL~s~syedk 145 (364)
-..|++||-|..=-..+.+.+...++.+.|+-.. . .-+.|.+|.+..+.+-.-.+.||.|.+.. ++...|.++
T Consensus 15 ~~~vnvigVV~~~~~p~~s~G~d~~~tl~I~D~S-~--~gl~v~iF~~~~~~LP~v~~~GDII~l~~-vki~~~~g~ 87 (294)
T 1xjv_A 15 GTIVNVYGVVKFFKPPYLSKGTDYCSVVTIVDQT-N--VKLTCLLFSGNYEALPIIYKNGDIVRFHR-LKIQVYKKE 87 (294)
T ss_dssp SEEEEEEEEEEEEEEEEECSSSSEEEEEEEECTT-C--CEEEEEEEESSGGGSCCCCSTTCEEEEEE-EEEEEETTE
T ss_pred CCeeEEEEEEEEcCCCccCCCCeEEEEEEEEcCC-C--CCEEEEEECCChHHCCCCCCCCCEEEEEE-EEEEEECCe
Confidence 3468999998633333445445788888887543 2 23999999987777765569999988874 455566554
No 68
>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A {Methanothermobacterthermautotrophicus} SCOP: b.40.4.11
Probab=33.51 E-value=51 Score=30.56 Aligned_cols=50 Identities=18% Similarity=0.234 Sum_probs=35.7
Q ss_pred CeeEEEEEechHHHHHHhhcCCCCeEEEEEEeeeCCCCcC-CeEEEEEEEeeEEec
Q 017902 106 SLWIPILFEGDLAHIASSHLKKDDHVHIAGQLTADPPAIE-GQANVQVMVHSLNLI 160 (364)
Q Consensus 106 T~wI~Vv~wGkLAE~aaqhLkKGD~V~VsGRL~s~syedk-~qt~~eVvVe~v~FV 160 (364)
+--+.|.+-++|.+ .++.||+|.|.|-+.... .+. ....+-|.|.+|...
T Consensus 197 Prsi~V~l~~dLvd----~~~PGDrV~vtGI~~~~~-~~~~~~~~~~l~a~~I~~~ 247 (279)
T 1ltl_A 197 PRQITVVLEDDLVD----TLTPGDIVRVTGTLRTVR-DERTKRFKNFIYGNYTEFL 247 (279)
T ss_dssp CCEEEEEEEGGGTT----CCCTTCEEEEEEEEEEEE-ETTTTEEEEEEEEEECCBC
T ss_pred CeEEEEEEcccccC----ccCCCCEEEEEEEEEEee-CCCCceEEEEEEEEEEEEe
Confidence 47899999999976 569999999999998763 122 334444556555544
No 69
>4hsp_A Hypothetical protein; PF11736 family protein, DUF3299, structural genomics, joint for structural genomics, JCSG; HET: MSE; 2.45A {Pseudomonas aeruginosa}
Probab=33.26 E-value=34 Score=29.95 Aligned_cols=85 Identities=9% Similarity=0.090 Sum_probs=55.9
Q ss_pred cccce-EEEEEEeCCCceEEECCCCcEEEEEEEEEcCC--------CCCeeEEEEEechHHHHHHhhcCCCCeEEEEEEe
Q 017902 67 KVANS-VNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAA--------SHSLWIPILFEGDLAHIASSHLKKDDHVHIAGQL 137 (364)
Q Consensus 67 ~l~Ns-V~LIGrLg~DPElr~T~~Gk~va~f~LAv~~~--------~~T~wI~Vv~wGkLAE~aaqhLkKGD~V~VsGRL 137 (364)
.|.++ |.|-|+|. -+....+|+ +..|.|+--.+ -....|.|.+=..++ .-.--|.|.|+|+|
T Consensus 51 ~LdGk~VripGfvv---PLe~~~~~~-vteFlLVPy~GACiH~PPPPpNQiI~V~~~~g~~-----~~~l~~pvwV~G~L 121 (150)
T 4hsp_A 51 ALDGIEAKLPGYIV---PLEISEAGL-VTEFLLVPYYGACIHVPPPPSNQIVYVKTAKGVQ-----MDELYQPFWVEGTF 121 (150)
T ss_dssp GGTTEEEEEEEEEE---EEEECTTSE-EEEEEEESSTTBTTTBCCCCGGGCEEEEEEEEEE-----STTTTSCEEEEEEE
T ss_pred hhCCCEEEeccEEE---EeccCCCCc-EEEEEEeCCCCcCcCCCCCCCceEEEEECCCCcc-----chhccceEEEEEEE
Confidence 66555 89999986 233433344 66777763321 123667776544432 11234899999999
Q ss_pred eeCCCCcC-CeEEEEEEEeeEEec
Q 017902 138 TADPPAIE-GQANVQVMVHSLNLI 160 (364)
Q Consensus 138 ~s~syedk-~qt~~eVvVe~v~FV 160 (364)
+....+.+ ..+.|.+.+..|+--
T Consensus 122 ~~~~~~~~l~~~~Y~m~a~~i~~y 145 (150)
T 4hsp_A 122 KVENASSELAAAGYRMQASKVTPY 145 (150)
T ss_dssp ECCCEECSSCEESEEEEEEEEEEC
T ss_pred EEeeecccceeEEeEEeeeEEEEe
Confidence 99998777 788999999888643
No 70
>4ah6_A Aspartate--tRNA ligase, mitochondrial; 3.70A {Homo sapiens}
Probab=30.45 E-value=1.6e+02 Score=30.89 Aligned_cols=82 Identities=12% Similarity=0.252 Sum_probs=53.3
Q ss_pred ceEEEEEEeCCCceEEECCCCcEEEEEEEEEcCCCCCeeEEEEEechH----HHHHHhhcCCCCeEEEEEEeeeCCCCc-
Q 017902 70 NSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAASHSLWIPILFEGDL----AHIASSHLKKDDHVHIAGQLTADPPAI- 144 (364)
Q Consensus 70 NsV~LIGrLg~DPElr~T~~Gk~va~f~LAv~~~~~T~wI~Vv~wGkL----AE~aaqhLkKGD~V~VsGRL~s~syed- 144 (364)
-.|+|.|+|.+- | ++. | |..+. .+-.++|++-.+. +...++.|..||.|.|+|.+..+.-..
T Consensus 25 ~~V~l~GwV~~~---R---~~~----F-i~LrD--~~g~iQvv~~~~~~~~~~~~~~~~l~~e~~V~V~G~v~~~~~~~~ 91 (617)
T 4ah6_A 25 QEVTLCGWIQYR---R---QNT----F-LVLRD--FDGLVQVIIPQDESAASVKKILCEAPVESVVQVSGTVISRPAGQE 91 (617)
T ss_dssp CEEEEEEEECCC---C---TTT----E-EEEEC--SSCEEEEECCCSSSSHHHHHHHHHCCSSCEEEEEEEEEECSTTCC
T ss_pred CEEEEEEEeeee---c---CeE----E-EEEEe--CCcCEEEEEeCCcCcHHHHHHHhcCCCCCEEEEEEEEEeCCcccc
Confidence 369999999853 2 122 3 22222 2457888876543 223456799999999999998763211
Q ss_pred --CCe-EEEEEEEeeEEeccCCC
Q 017902 145 --EGQ-ANVQVMVHSLNLIEPTS 164 (364)
Q Consensus 145 --k~q-t~~eVvVe~v~FV~~k~ 164 (364)
+.. -.++|.|++|..|....
T Consensus 92 n~~~~tgeiEl~~~~i~vL~~a~ 114 (617)
T 4ah6_A 92 NPKMPTGEIEIKVKTAELLNACK 114 (617)
T ss_dssp CTTSTTTTEEEEEEEEEEEECBC
T ss_pred CccCCCCcEEEEEeEEEEeecCC
Confidence 111 24899999999987654
No 71
>1qzg_A Protection of telomeres protein 1; protrein-DNA complex, single-stranded telomeric DNA, DNA binding protein/DNA complex; HET: TMP; 1.90A {Schizosaccharomyces pombe} SCOP: b.40.4.3 PDB: 1qzh_A
Probab=24.43 E-value=85 Score=28.27 Aligned_cols=75 Identities=15% Similarity=0.065 Sum_probs=49.0
Q ss_pred ceEEEEEEeCCCceEEECCCC--cEEEEEEEEEcC-CCCCeeEEEEEechHHHHHHhhcCCCCeEEEEEEeeeCCCCcC
Q 017902 70 NSVNLIGHVDAPVQFQTSSDG--KHWAGTVIVQHA-ASHSLWIPILFEGDLAHIASSHLKKDDHVHIAGQLTADPPAIE 145 (364)
Q Consensus 70 NsV~LIGrLg~DPElr~T~~G--k~va~f~LAv~~-~~~T~wI~Vv~wGkLAE~aaqhLkKGD~V~VsGRL~s~syedk 145 (364)
-.|+|||-|.-=-..+.+..| .+++.++|+-.. .....=+.|.+|.+..+.+=.=.+-||.|.+. +++...|.++
T Consensus 43 ~~VNviGVVvd~~~P~~S~rGtkD~~~TltI~D~S~~~~~~gL~v~iF~~~~e~LP~V~~~GDIIlL~-rvkiq~~~g~ 120 (187)
T 1qzg_A 43 TIVNLFGIVKDFTPSRQSLHGTKDWVTTVYLWDPTCDTSSIGLQIHLFSKQGNDLPVIKQVGQPLLLH-QITLRSYRDR 120 (187)
T ss_dssp EEEEEEEEEEEEEEEEECSSTTCCEEEEEEEECTTSCTTSCCEEEEEEESSSSCSCCCCSTTCEEEEE-EEEEEEETTE
T ss_pred CEEEEEEEEEEccCceecCCCCccEEEEEEEEeCCCCCCCCceEEEEECCChhhCCCCCCCCCEEEEE-EEEEEEECCe
Confidence 358999988522222344234 588999888643 12223499999998877665444889999998 4555555444
No 72
>4gop_C Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=24.24 E-value=1.7e+02 Score=28.69 Aligned_cols=69 Identities=12% Similarity=0.122 Sum_probs=41.4
Q ss_pred eEEEEEEeCCCceEE--EC-CCCcE--EEEEEEEEcCCCCC-eeEEEEEechHHHHHHh--hcCCCCeEEEEEEeeeCCC
Q 017902 71 SVNLIGHVDAPVQFQ--TS-SDGKH--WAGTVIVQHAASHS-LWIPILFEGDLAHIASS--HLKKDDHVHIAGQLTADPP 142 (364)
Q Consensus 71 sV~LIGrLg~DPElr--~T-~~Gk~--va~f~LAv~~~~~T-~wI~Vv~wGkLAE~aaq--hLkKGD~V~VsGRL~s~sy 142 (364)
.|.+||.|..==+++ .+ .+|+. ...+.|.- ++ .-|+|++||+.|+.... ....|+.|.|.|-... .|
T Consensus 135 ~vDViG~V~~v~~~~~i~~k~~g~~~~kr~i~L~D----~sg~~i~~tLWg~~A~~f~~~~~~~~~~VV~i~~~kV~-~f 209 (444)
T 4gop_C 135 QCDVIGILDSYGELSEIVSKASQRPVQKRELTLVD----QGNRSVKLTLWGKTAETFPTNAGVDEKPVLAFKGVKVG-DF 209 (444)
T ss_dssp CCBEEEEEEEECCCEEECCTTTCSCEEEEEEEEEC----TTCBEEEEEEEHHHHHTSTTSTTSSSCCEEEEESCEEE-CT
T ss_pred ceEEEEEEEEcCCcEEEEEccCCceeeEEEEEEEe----CCCCEEEEEEEhhhhhhhhhhhccCCCCEEEEEeEEEe-ec
Confidence 367788765422222 22 25653 33344432 23 47999999999997653 2678998888884333 45
Q ss_pred Cc
Q 017902 143 AI 144 (364)
Q Consensus 143 ed 144 (364)
.+
T Consensus 210 ~G 211 (444)
T 4gop_C 210 GG 211 (444)
T ss_dssp TS
T ss_pred CC
Confidence 44
No 73
>3mal_A Stromal cell-derived factor 2-like protein; trefoil fold, MIR motifs, unfolded protein response, putativ binding protein, plant protein; 1.95A {Arabidopsis thaliana} SCOP: b.42.6.0
Probab=23.64 E-value=15 Score=33.04 Aligned_cols=28 Identities=14% Similarity=-0.010 Sum_probs=23.7
Q ss_pred CCCCccCCCCceeeccC--CchhhhccCCC
Q 017902 329 GPDFKHKETGKPLWLNY--SPAWVTSQLPP 356 (364)
Q Consensus 329 ~pDfkhk~t~~~lwl~~--~p~wv~~~l~~ 356 (364)
.=-|+|.+||-.||-.. .|.|...|.+.
T Consensus 143 ~fRL~H~~T~~yL~sh~~~lp~wg~~Q~EV 172 (199)
T 3mal_A 143 RVRLQHIDTSGYLHSHDKKYQRIAGGQQEV 172 (199)
T ss_dssp EEEEEETTTCCEEEEEEEECCSSSTTCEEE
T ss_pred eEEEEECCCCeEEeeCCCCCCCCCCcceEE
Confidence 34588999999999985 89999998775
No 74
>4eh1_A Flavohemoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: FAD; 2.20A {Vibrio cholerae o1 biovar el tor}
Probab=23.16 E-value=1.6e+02 Score=25.41 Aligned_cols=28 Identities=18% Similarity=0.125 Sum_probs=22.7
Q ss_pred chHHHHHHhhcCCCCeEEEEEEeeeCCC
Q 017902 115 GDLAHIASSHLKKDDHVHIAGQLTADPP 142 (364)
Q Consensus 115 GkLAE~aaqhLkKGD~V~VsGRL~s~sy 142 (364)
|.....+.++++.||.|.|.|-...-.+
T Consensus 83 G~~S~~l~~~l~~G~~v~v~gP~G~~~~ 110 (243)
T 4eh1_A 83 GLVSHYLHNNVKVGDSVKLYAPAGDFFY 110 (243)
T ss_dssp CHHHHHHHHHCCTTCEEEEEEEECSCCC
T ss_pred CeehhHHHhcCCCCCEEEEEccCcccCc
Confidence 7778888788999999999997755443
No 75
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=22.20 E-value=55 Score=35.04 Aligned_cols=62 Identities=13% Similarity=0.168 Sum_probs=41.7
Q ss_pred ceEEEEEEeCCCceEEECCCCcEEEEEEEEEcCCCCCeeEEEEEechHHHHHHhhcCC--CCeEEEEEEeee
Q 017902 70 NSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAASHSLWIPILFEGDLAHIASSHLKK--DDHVHIAGQLTA 139 (364)
Q Consensus 70 NsV~LIGrLg~DPElr~T~~Gk~va~f~LAv~~~~~T~wI~Vv~wGkLAE~aaqhLkK--GD~V~VsGRL~s 139 (364)
..|++.|+|..-..... .+... +.+.+.. .+..+.+++|+.- .+.+.++. |+.|.|.|++..
T Consensus 166 ~~~~~~~~v~~~~~~~~--~~~~~--~~~~~~d--~~~~~~~~~f~~~--~~~~~~~~~~g~~~~~~G~~~~ 229 (780)
T 1gm5_A 166 EKVTTQGKIVSVETKKF--QNMNI--LTAVLSD--GLVHVPLKWFNQD--YLQTYLKQLTGKEVFVTGTVKS 229 (780)
T ss_dssp CCCEEEECCCCCEEEEC--SSCEE--EEEEECC--SSCCEEEEECSCC--TTHHHHHTTCSSCEEEEEEECS
T ss_pred CEEEEEEEEEEEEeecC--CCCeE--EEEEEEE--CCceEEEEEECcH--HHHhhCccCCCCEEEEEEEEEE
Confidence 37899999997654433 23332 2233332 3446899999842 35566789 999999999986
No 76
>1t9f_A Protein 1D10; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics, secsg; 2.00A {Caenorhabditis elegans} SCOP: b.42.6.1
Probab=22.09 E-value=18 Score=32.05 Aligned_cols=26 Identities=23% Similarity=0.105 Sum_probs=22.6
Q ss_pred CCccCCCCceeeccC--CchhhhccCCC
Q 017902 331 DFKHKETGKPLWLNY--SPAWVTSQLPP 356 (364)
Q Consensus 331 Dfkhk~t~~~lwl~~--~p~wv~~~l~~ 356 (364)
-|+|.+||..||... .|.|...|.+.
T Consensus 133 RL~H~~tg~yL~~~~~~lp~w~~~Q~EV 160 (187)
T 1t9f_A 133 KLRHAVTGSYLSLSGQQFGRPIHGQREV 160 (187)
T ss_dssp EEEETTTCCEEEEEEEECCTTSTTCEEE
T ss_pred EEEECCcCeEEecCCcccCCCCCCceEE
Confidence 468999999999985 79999988776
No 77
>3ebe_A Protein MCM10 homolog; OB-fold, zinc finger, CCCH, DNA replication, metal-binding, zinc-finger, replication; 2.30A {Xenopus laevis} PDB: 3h15_A
Probab=21.36 E-value=1e+02 Score=27.87 Aligned_cols=63 Identities=13% Similarity=0.155 Sum_probs=42.3
Q ss_pred eEEEEEEeCCCceEEECCCCcEEEEEEEEEcCCCCCeeEEEEEechHHHHHHhhcCCCCeEEEEE
Q 017902 71 SVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAASHSLWIPILFEGDLAHIASSHLKKDDHVHIAG 135 (364)
Q Consensus 71 sV~LIGrLg~DPElr~T~~Gk~va~f~LAv~~~~~T~wI~Vv~wGkLAE~aaqhLkKGD~V~VsG 135 (364)
...++|-|...-+.+.+.+|+..+...|..=. .....+.|-+||+..+.. -.+..|+.|+|-.
T Consensus 57 dwv~~GVV~~Ks~pk~~~~gk~y~~w~l~DL~-~~~~~V~lfLFg~a~~~~-~k~~~G~ViaiLN 119 (200)
T 3ebe_A 57 DWVTFGVIVKKITPQSSNNGKTFSIWRLNDLK-DLDKYISLFLFGDVHKEH-WKTDQGTVIGLLN 119 (200)
T ss_dssp CEEEEEEEEEEECC-------CCEEEEEECSS-STTCCEEEEECHHHHHHH-TTCCTTEEEEEES
T ss_pred CEEEEEEEEecCCccCcCCCCeEEEEEEEecC-CCCcEEEEEEechHHHHh-cCcCCceEEEEEC
Confidence 57889999998888889999877766665221 123569999999988874 4599999999875
Done!