Query 017903
Match_columns 364
No_of_seqs 216 out of 679
Neff 4.8
Searched_HMMs 46136
Date Fri Mar 29 04:26:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017903.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017903hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00777 Glyco_transf_29: Glyc 100.0 2.1E-48 4.5E-53 370.0 10.6 192 150-346 33-265 (266)
2 KOG2692 Sialyltransferase [Car 100.0 1E-42 2.2E-47 347.5 13.1 255 85-339 35-363 (376)
3 PF06002 CST-I: Alpha-2,3-sial 93.7 0.29 6.4E-06 48.5 8.3 166 172-344 2-210 (291)
4 PF12202 OSR1_C: Oxidative-str 47.3 9.9 0.00021 27.1 1.0 23 81-103 10-32 (38)
5 PF01973 MAF_flag10: Protein o 36.0 62 0.0013 28.6 4.6 129 172-302 25-163 (170)
6 PF03672 UPF0154: Uncharacteri 15.8 2.6E+02 0.0057 22.0 4.0 35 5-41 4-39 (64)
7 PRK09334 30S ribosomal protein 14.3 1.8E+02 0.0039 24.1 2.9 26 328-354 59-84 (86)
8 PF06422 PDR_CDR: CDR ABC tran 13.2 1E+02 0.0022 25.7 1.2 23 158-180 1-25 (103)
9 PRK11546 zraP zinc resistance 13.0 3.2E+02 0.007 24.7 4.4 20 31-50 41-60 (143)
10 PF12565 DUF3747: Protein of u 11.1 1.9E+02 0.004 27.3 2.3 33 187-226 88-120 (181)
No 1
>PF00777 Glyco_transf_29: Glycosyltransferase family 29 (sialyltransferase); InterPro: IPR001675 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 29 (GT29 from CAZY) comprises enzymes with a number of known activities; sialyltransferase (2.4.99 from EC), beta-galactosamide alpha-2,6-sialyltransferase (2.4.99.1 from EC), alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase (2.4.99.3 from EC), beta-galactoside alpha-2,3-sialyltransferase (2.4.99.4 from EC), N-acetyllactosaminide alpha-2,3-sialyltransferase (2.4.99.6 from EC), alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase (2.4.99.8 from EC); lactosylceramide alpha-2,3-sialyltransferase (2.4.99.9 from EC). These enzymes use a nucleotide monophosphosugar as the donor (CMP-NeuA) instead of a nucleotide diphosphosugar. Sialyltransferase may be responsible for the synthesis of the sequence NEUAC-Alpha-2,3-GAL-Beta-1,3-GALNAC-, found on sugar chains O-linked to thr or ser and also as a terminal sequenec on certain gagnliosides. These enzymes catalyse sialyltransfer reactions during glycosylation, and are type II membrane proteins.; GO: 0008373 sialyltransferase activity, 0006486 protein glycosylation, 0030173 integral to Golgi membrane; PDB: 2WNF_A 2WML_A 2WNB_A.
Probab=100.00 E-value=2.1e-48 Score=369.96 Aligned_cols=192 Identities=30% Similarity=0.439 Sum_probs=111.2
Q ss_pred hHHHHHhhccCCCCCCCCCCC----CcceEEecCCcCCCCCCCCCcccccceeeeccCCcccCccccccccceeeeecCc
Q 017903 150 TLCMEKLSLVLPETPPYSPRQ----FGRCAVIGNSGDLLKTRFGKEIDGYDVVIRENGAPIQNYTDYVGKKSTFRLLNRG 225 (364)
Q Consensus 150 ~~~~~~L~~~lP~~~p~~~~~----~~~CAVVGNsGiL~~S~~G~eID~~D~ViR~N~apv~gfe~DVG~KTt~~~~np~ 225 (364)
..+.+.|.+++|..+|+.... |+|||||||||||+||+||+|||+||||||||+||++|||+|||+|||++++||+
T Consensus 33 ~~i~~~l~~l~~~~~p~~~~~~~~~~~~CAVVGNsGiL~~S~~G~eID~~D~ViR~N~aP~~gfe~DVG~kT~~~~~n~~ 112 (266)
T PF00777_consen 33 FKISKELYKLLPESSPFSLKHFKRRCRTCAVVGNSGILLGSGCGKEIDSHDFVIRMNLAPVKGFEKDVGSKTTLRTMNPS 112 (266)
T ss_dssp --HHHHHHHHTTT-S-S---TTTTG--EEEEE--BGGGTT---HHHHHTSSEEEEETT---TT-HHHH-S--SEEEEBTT
T ss_pred hhHHHHHHHhCcccCccccccccCCCCeEEEEcCChHhccCccccccccCeeEEecCCccccccccccCccccccccChh
Confidence 456788899999988876555 9999999999999999999999999999999999999999999999999999999
Q ss_pred chhc-ccccccccccCcEEEEEccchHH--HH---------------------HhhcccccccChHHHHhhhcc------
Q 017903 226 SAKA-LDKVVELDETRKEVLIVKTTIHD--IM---------------------SKMIQEIPIKNPVYLMLGAAF------ 275 (364)
Q Consensus 226 s~~~-l~~~~~l~~~~~~~l~vk~~~~~--~~---------------------~k~~~~v~i~nP~fl~~~~~~------ 275 (364)
++.. + +. .+. ......+.....+ |+ .....++.+.||.+++....+
T Consensus 113 ~~~~~~-~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 188 (266)
T PF00777_consen 113 SLQRRY-NL--LDK-DTFLVLLPFKGSDLVWLPAFSSKKNTRKSFWAYKALEKKYPNQKVRILHPEFLRYIWRFWLRRGG 188 (266)
T ss_dssp B------------T-T-EEEE--SSHHHHHHHHHHTTT-----BSSSB--S-----GGGEEEB-HHHHHHHHHHTSTT--
T ss_pred Hhhhhc-cc--ccc-ccceeccccccchhhhhhhhhccccccccccchhhhhhccCcceeeecCHHHHhhHHHHhhhhhc
Confidence 9843 2 11 111 1111111111000 10 112346789999998766544
Q ss_pred CCCCCChHHHHHHHHHhcCCeEEEeeeecCCCCCccccCCcCCCC---CCCCCc----hHHHHHHHHHcCCeEEEecC
Q 017903 276 GSAAKGTGLKALEFALSICDSVDMYGFTVDPGYKEWTRYFSESRK---GHTPLH----GRAYYHMMECLGVSLEVLSP 346 (364)
Q Consensus 276 ~~~~pSTGllav~lAL~lCDeV~lYGF~pd~~y~~w~HYy~~~~~---~~~~lH----~~~~~~~Lh~~Gv~irlh~~ 346 (364)
...+||||++++++||++||||+||||||..+...++|||++... .....| |+.++++||+.|+ |++|++
T Consensus 189 ~~~~pSTG~~~~~~Al~~CD~V~lYGF~p~~~~~~~~HYyd~~~~~~~~~~~~H~~~~E~~~~~~L~~~Gv-i~l~~g 265 (266)
T PF00777_consen 189 RGNRPSTGLMAVSLALHFCDEVHLYGFWPPDNRTVPYHYYDNVKPKPCFFYKNHDMPAEFRLLKRLHKQGV-IKLHTG 265 (266)
T ss_dssp -SSS--HHHHHHHHHHHH-SEEEEES-S---TTS---BTTB------------S-HHHHHHHHHHHHHTTS-SEEE--
T ss_pred cccCCCccHHHHHHHhcCCCeEEEEEEEecCCCCCccccccCccccccCCCCCCCCHHHHHHHHHHHHCCC-eEEecC
Confidence 246899999999999999999999999995566778999998542 112346 5678999999999 999986
No 2
>KOG2692 consensus Sialyltransferase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1e-42 Score=347.51 Aligned_cols=255 Identities=29% Similarity=0.452 Sum_probs=174.3
Q ss_pred CCCCCCccccccccchhHHHHHHHhhhcccccchHHHhhcCCCC---ccchhhhhhhc-------------ccc----c-
Q 017903 85 DPNTGELESLSFDFNLCEAVAAWERVRNSTTILTKEYIDALPNG---WEEYAWRRINK-------------GVL----L- 143 (364)
Q Consensus 85 ~~~~~~~e~~~~~f~~~~~~~~w~~~~~~~~~~t~e~~~~lp~g---~~~~~w~~i~~-------------~~~----l- 143 (364)
++.+..++++..++.++..+..|+...+....++.++++.++.+ |.+..+..... ... .
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (376)
T KOG2692|consen 35 DSPLGLLPGLSNGLLVAAQRLPKEVVKRLSVVLRNELLQRLASGRSLWKDNSFLAREQRQLQLRCKDALKNFSRSKPSLP 114 (376)
T ss_pred cchhhhhhccCCceeeeeeecccccccceeeehHhhhhhhccccCccccccchhHHHHHHHHHhccchhhcceecccccc
Confidence 34445666666777777777888888877778888999999998 88877743210 000 0
Q ss_pred -----cC---C-CchhHHHHHhhccCCCCCCCC---CCCCcceEEecCCcCCCCCCCCCcccccceeeeccCCcccCccc
Q 017903 144 -----NR---C-QNKTLCMEKLSLVLPETPPYS---PRQFGRCAVIGNSGDLLKTRFGKEIDGYDVVIRENGAPIQNYTD 211 (364)
Q Consensus 144 -----~~---~-~~~~~~~~~L~~~lP~~~p~~---~~~~~~CAVVGNsGiL~~S~~G~eID~~D~ViR~N~apv~gfe~ 211 (364)
.. . .........++..+|..+|+. ...|++||||||||+|+||+||+|||+||+|||||+|||+|||+
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~p~~~~~~~~c~~CAVVGNsG~L~~S~~G~eID~~D~ViR~N~APt~gye~ 194 (376)
T KOG2692|consen 115 LGDSMLYSRSRWRRLEVIDPPLFLLLPGVSPLFPLLFKRCRRCAVVGNSGILLNSRLGREIDSHDFVIRLNLAPTKGYEK 194 (376)
T ss_pred chhhheecccccccccccCcchhhhccccCCCcccccccCceEEEECCcceeCCCccccccccccEEEECCCCCccchhc
Confidence 00 0 000111111466677776643 22388899999999999999999999999999999999999999
Q ss_pred cccccceeeeecCcchhcccccccccccCcEEEEEccchHH----HH----H----------------hhcccccccChH
Q 017903 212 YVGKKSTFRLLNRGSAKALDKVVELDETRKEVLIVKTTIHD----IM----S----------------KMIQEIPIKNPV 267 (364)
Q Consensus 212 DVG~KTt~~~~np~s~~~l~~~~~l~~~~~~~l~vk~~~~~----~~----~----------------k~~~~v~i~nP~ 267 (364)
|||+|||++++||+++................++++.+..+ +. . ....++.+.||.
T Consensus 195 DVGsKTt~r~~n~~Sv~~~~~~~~~~~~~~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (376)
T KOG2692|consen 195 DVGSKTTLRTVNPPSVPTLLRNYLLDEPKRVTFVVWLPFKNMSLLWLPAFYNTVNLRTGYWPVPRLYPVKPDKILLLDPL 274 (376)
T ss_pred ccccceeEEEEcchhhhhccccccccccccceEEEEcCccchhhhhhhhhccccccccceeecceeccCCcCeEeecChH
Confidence 99999999999998886543322221111144444432211 10 0 012356778888
Q ss_pred HHHhhh-cc------CCCCCChHHHHHHHHHhcCCeEEEeeeecCCCCCc---c-ccCCcCCCCC--CCCCch----HHH
Q 017903 268 YLMLGA-AF------GSAAKGTGLKALEFALSICDSVDMYGFTVDPGYKE---W-TRYFSESRKG--HTPLHG----RAY 330 (364)
Q Consensus 268 fl~~~~-~~------~~~~pSTGllav~lAL~lCDeV~lYGF~pd~~y~~---w-~HYy~~~~~~--~~~lH~----~~~ 330 (364)
|+.... .+ ...+||||++++++||++|||||+|||||++.... + +||||+.... ....|+ ...
T Consensus 275 f~~~~~~~~~~s~~~~~~~pSTG~l~~~lAl~lCdeV~lyGF~~~~~~~~~~~~~~hYyd~~~~~~~~~~~H~~~~e~~~ 354 (376)
T KOG2692|consen 275 FILYTVDRYLKSHGVQPKRPSTGLLAVTLALHLCDEVHLYGFGPDNRCRNSHYVPYHYYDNAKPDELFYGLHDMPLEGEA 354 (376)
T ss_pred HHHHHHHHHhhCCCCCCCCCChhHHHHHHHHhhcCeEEEEEecCCCCCccCCCCccccccccccchhhhhhhhchhHHHH
Confidence 875432 21 13689999999999999999999999999873222 2 4888877643 556663 346
Q ss_pred HHHHHHcCC
Q 017903 331 YHMMECLGV 339 (364)
Q Consensus 331 ~~~Lh~~Gv 339 (364)
+++||+.|+
T Consensus 355 ~~~l~~~g~ 363 (376)
T KOG2692|consen 355 LRKLHEKGV 363 (376)
T ss_pred HHHHHhccc
Confidence 889999996
No 3
>PF06002 CST-I: Alpha-2,3-sialyltransferase (CST-I); InterPro: IPR009251 This entry represents several alpha-2,3-sialyltransferase (2.4.99 from EC) proteins, most of which are found in the food-borne pathogen Campylobacter jejuni. Sialyltransferases transfer a sialic acid moiety from cytidine-5'-monophospho-N-acetyl-neuraminic acid (CMP-NeuAc) to terminal positions of various key glycoconjugates, which play critical roles in cell recognition and adherence []. The structure of Cst-II alpha-2,3-sialyltransferase from C. jejuni consists of a 3-layer alpha/beta/alpha topology. Cst-II catalytic mechanism involves an essential histidine (general base) and two tyrosine residues (coordination of the phosphate leaving group) to carry out substrate binding and glycosyl transfer. ; PDB: 2X63_A 2X61_B 1RO7_B 2WQQ_A 2X62_B 1RO8_A 2DRJ_A 2P56_A 2P2V_A.
Probab=93.71 E-value=0.29 Score=48.45 Aligned_cols=166 Identities=14% Similarity=0.166 Sum_probs=77.8
Q ss_pred cceEEecCCcCCCCCCCCCcccccceeeeccCCccc-CccccccccceeeeecCcchhc-cccccccc---cc-CcEEEE
Q 017903 172 GRCAVIGNSGDLLKTRFGKEIDGYDVVIRENGAPIQ-NYTDYVGKKSTFRLLNRGSAKA-LDKVVELD---ET-RKEVLI 245 (364)
Q Consensus 172 ~~CAVVGNsGiL~~S~~G~eID~~D~ViR~N~apv~-gfe~DVG~KTt~~~~np~s~~~-l~~~~~l~---~~-~~~~l~ 245 (364)
++|.|.|||..|..-..|. +-.-+.|||||.-=-+ .| -.|.+..-.++||..... ......|. +. -+.++.
T Consensus 2 k~~~i~gngps~~~~~~~~-~~~~~~~fr~n~fy~e~~~--~lg~~~~~VFFn~~vf~~Qy~T~~~Li~n~EY~~e~i~c 78 (291)
T PF06002_consen 2 KPAIIAGNGPSLKEIDYSL-LPKDFDVFRCNQFYFEDKY--YLGKKVKAVFFNPCVFFEQYYTAKQLIQNGEYEIENIYC 78 (291)
T ss_dssp SEEEEE-SSGGGGC--GGG-S-SSEEEEEETTGGG-SBE--TT-SEECEEEE-GGGHHHHHHHHHHHHHTTS-EECEEEE
T ss_pred CceEEeCCCCchhhcchhh-CCCcccEEEecceecchhh--hcccceeEEEechHHHHHHHHHHHHHHhcCceeeeeeEE
Confidence 5799999999998666665 4444569999976542 22 489999999999987531 00000111 11 112322
Q ss_pred Ecc--c-----hH-HHHHhhcccccccCh------HHHH---hhhccCCCCCChHHHHHHHHHhcC-CeEEEeeeecCCC
Q 017903 246 VKT--T-----IH-DIMSKMIQEIPIKNP------VYLM---LGAAFGSAAKGTGLKALEFALSIC-DSVDMYGFTVDPG 307 (364)
Q Consensus 246 vk~--~-----~~-~~~~k~~~~v~i~nP------~fl~---~~~~~~~~~pSTGllav~lAL~lC-DeV~lYGF~pd~~ 307 (364)
..- . .. ..+.+....+...|- .|.. ....+-.++.|||.+|+..|+.+- .+|-+.|.- +
T Consensus 79 s~~~~~~~e~~~f~~~~~~~yp~~~~~y~~l~~l~~f~~~~ky~~~y~~q~~TSGVyM~~vAIAlGYKEIYLaGID-F-- 155 (291)
T PF06002_consen 79 STINFEDFENKYFDDYFDKHYPDARLTYSYLKKLKPFYAHIKYNEIYYNQRITSGVYMCAVAIALGYKEIYLAGID-F-- 155 (291)
T ss_dssp ---S-TTTS-HHHHHHHHHHSTT-EETHHHHTTSHHHHHHHHHHHHHH-----HHHHHHHHHHHCT--EEEEES---T--
T ss_pred eccccccccchhhhhHHHHhCCCchhHHHHHHhcHHHHHHHHHHHhhcCCCcchHHHHHHHHHHcCcceEEEeeee-e--
Confidence 110 0 11 112232233333222 1221 111122467899999999999885 458888883 1
Q ss_pred C-CccccCCcCCCC--------------CCCCCchHH----HHHHHHHcCCeEEEe
Q 017903 308 Y-KEWTRYFSESRK--------------GHTPLHGRA----YYHMMECLGVSLEVL 344 (364)
Q Consensus 308 y-~~w~HYy~~~~~--------------~~~~lH~~~----~~~~Lh~~Gv~irlh 344 (364)
| ..+.||+.+..+ .+...|.++ -.+.+.+.+- ++|.
T Consensus 156 Y~~~~~hy~fe~k~~ni~~l~~~~~~~~~~~~~Hsk~~Dlqal~~lqk~y~-v~iY 210 (291)
T PF06002_consen 156 YQNGGGHYAFENKSENIINLLPDFENRKSSDIQHSKDYDLQALEFLQKYYD-VKIY 210 (291)
T ss_dssp T-TTSSSSSS-SSTHHHHHHSGGGGSS--STTT--HHHHHHHHHHHHHHHT--EEE
T ss_pred ecCCCCcccccccccchhhhCcccccccccccccchhhCHHHHHHHHHhcC-eeEE
Confidence 3 456788443321 234677433 3556777632 3444
No 4
>PF12202 OSR1_C: Oxidative-stress-responsive kinase 1 C terminal; InterPro: IPR024678 Oxidative-stress-responsive kinase 1 (OSR1) is involved in the signalling cascade which activates Na/K/2Cl co-transporter during osmotic stress. This entry represents the CCT domain found in OSR1, STE20/SPS1-related kinase and in WNK activators []. This domain is found in eukaryotes, and is approximately 40 amino acids in length. There is a single completely conserved residue F that may be functionally important. ; PDB: 2V3S_A 2LRU_A.
Probab=47.29 E-value=9.9 Score=27.07 Aligned_cols=23 Identities=35% Similarity=0.586 Sum_probs=16.3
Q ss_pred CCccCCCCCCccccccccchhHH
Q 017903 81 PKWRDPNTGELESLSFDFNLCEA 103 (364)
Q Consensus 81 ~~~~~~~~~~~e~~~~~f~~~~~ 103 (364)
++....+++++|.|+|+|++...
T Consensus 10 ~kK~~~k~ken~aI~F~F~~~~D 32 (38)
T PF12202_consen 10 PKKRKGKHKENEAIEFEFDLGKD 32 (38)
T ss_dssp TTSSSSS--TCEEEEEEEETTT-
T ss_pred cccccCccccCccEEEEEecCCC
Confidence 45567799999999999987543
No 5
>PF01973 MAF_flag10: Protein of unknown function DUF115; InterPro: IPR002826 The prokaryotic proteins in this family have no known function.
Probab=36.01 E-value=62 Score=28.61 Aligned_cols=129 Identities=15% Similarity=0.124 Sum_probs=62.3
Q ss_pred cceEEecCCcCCCCC-CCCCcccccceeeeccCCcccCccccccccceeeeecCcchhcccccccccccCcEEEEEccch
Q 017903 172 GRCAVIGNSGDLLKT-RFGKEIDGYDVVIRENGAPIQNYTDYVGKKSTFRLLNRGSAKALDKVVELDETRKEVLIVKTTI 250 (364)
Q Consensus 172 ~~CAVVGNsGiL~~S-~~G~eID~~D~ViR~N~apv~gfe~DVG~KTt~~~~np~s~~~l~~~~~l~~~~~~~l~vk~~~ 250 (364)
.+|.|||||..|... ..=++.-..-++|=+|.+... ..+-|-+-++++..-......+.........+..++.....
T Consensus 25 ~~~~IvgaGPSL~~~i~~lk~~~~~~~iia~~sa~~~--L~~~gI~Pd~~v~~D~~~~~~~~~~~~~~~~~i~l~~~~~~ 102 (170)
T PF01973_consen 25 KPAIIVGAGPSLDKNIELLKENRNKAIIIAVNSALKA--LLKNGIKPDFVVSIDPQFWNYEHFKEINKEFDIPLFFASSA 102 (170)
T ss_pred CeEEEEecCCCHHHHHHHHHhcccCcEEEEecHHHHH--HHHcCceEEEEEEcCCCcchHHHHhhcccccceEEEEeccc
Confidence 799999999999753 111222234566666655331 23356666666553332211111111111112333333332
Q ss_pred H-HHHHhhcccccc-cChH---HHHhhhc---cCCCCCChHHHHHHHHHhc-CCeEEEeee
Q 017903 251 H-DIMSKMIQEIPI-KNPV---YLMLGAA---FGSAAKGTGLKALEFALSI-CDSVDMYGF 302 (364)
Q Consensus 251 ~-~~~~k~~~~v~i-~nP~---fl~~~~~---~~~~~pSTGllav~lAL~l-CDeV~lYGF 302 (364)
+ ..+++......+ ..+. +-+.... .-...+|-+..++.+|+++ |++|-++|.
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sV~~~a~~lA~~lG~~~I~L~G~ 163 (170)
T PF01973_consen 103 NPNILRKFKGPKIFFFSNSYQYFAWFSKDFGYILYSGGSVANTALQLAYYLGFKPIYLIGQ 163 (170)
T ss_pred CHHHHHHcCCceEEEecCCccchhhhhccccccCCCCccHHHHHHHHHHHHCCCcEEEEee
Confidence 2 222222211111 1111 1111111 1123568899999999876 888999998
No 6
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=15.84 E-value=2.6e+02 Score=22.04 Aligned_cols=35 Identities=17% Similarity=0.218 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHh-ccCCccCCCCccchHH
Q 017903 5 QFAFLLALASGFAAILIYITG-VSNLYYNRISDEDYEA 41 (364)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 41 (364)
-+++++.++.||.+...|+.- +..+|. ++++.+.+
T Consensus 4 ilali~G~~~Gff~ar~~~~k~l~~NPp--ine~mir~ 39 (64)
T PF03672_consen 4 ILALIVGAVIGFFIARKYMEKQLKENPP--INEKMIRA 39 (64)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCC--CCHHHHHH
Confidence 456666777777776666655 444555 55555543
No 7
>PRK09334 30S ribosomal protein S25e; Provisional
Probab=14.34 E-value=1.8e+02 Score=24.13 Aligned_cols=26 Identities=19% Similarity=0.226 Sum_probs=22.3
Q ss_pred HHHHHHHHHcCCeEEEecCCccccccc
Q 017903 328 RAYYHMMECLGVSLEVLSPSELQSSLI 354 (364)
Q Consensus 328 ~~~~~~Lh~~Gv~irlh~~~~~~~~~~ 354 (364)
+...+.|++.|+ |++.+..++++++.
T Consensus 59 r~~Lr~L~~kG~-Ik~V~~~~~q~IYt 84 (86)
T PRK09334 59 KKVLRELEKRGV-LVLYSKNRRTPIYV 84 (86)
T ss_pred HHHHHHHHHCCC-EEEEecCCCeEEec
Confidence 556999999999 99999998887764
No 8
>PF06422 PDR_CDR: CDR ABC transporter; InterPro: IPR010929 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). In yeast, the PDR and CDR ABC transporters display extensive sequence homology, and confer resistance to several anti-fungal compounds by actively transporting their substrates out of the cell. These transporters have two homologous halves, each with an N-terminal intracellular hydrophilic region that contains an ATP-binding site, followed by a C-terminal membrane-associated region containing six transmembrane segments []. This entry represents a domain of the PDR/CDR ABC transporter comprising extracellular loop 3, transmembrane segment 6 and a linker region.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0016021 integral to membrane
Probab=13.23 E-value=1e+02 Score=25.74 Aligned_cols=23 Identities=30% Similarity=0.621 Sum_probs=16.9
Q ss_pred ccCCCCCCCCC--CCCcceEEecCC
Q 017903 158 LVLPETPPYSP--RQFGRCAVIGNS 180 (364)
Q Consensus 158 ~~lP~~~p~~~--~~~~~CAVVGNs 180 (364)
+++|..+.|.. .....|+++|.-
T Consensus 1 ~~iP~Gp~Y~~~~~~~q~C~~~Ga~ 25 (103)
T PF06422_consen 1 QLIPSGPGYDNISPANQVCAVVGAQ 25 (103)
T ss_pred CcCCCCCCCCCCCCCcCccCCCCCC
Confidence 35787776754 458999999874
No 9
>PRK11546 zraP zinc resistance protein; Provisional
Probab=13.05 E-value=3.2e+02 Score=24.69 Aligned_cols=20 Identities=20% Similarity=0.333 Sum_probs=16.6
Q ss_pred cCCCCccchHHHHHHHHHHh
Q 017903 31 YNRISDEDYEALESLQNAFR 50 (364)
Q Consensus 31 ~~~~~~~~~~~l~~~~~~~~ 50 (364)
...|++|+...++.++..|.
T Consensus 41 ~~~LT~EQQa~~q~I~~~f~ 60 (143)
T PRK11546 41 AAPLTTEQQAAWQKIHNDFY 60 (143)
T ss_pred cccCCHHHHHHHHHHHHHHH
Confidence 35699999999988877776
No 10
>PF12565 DUF3747: Protein of unknown function (DUF3747); InterPro: IPR022222 This family of proteins is found in bacteria. Proteins in this family are typically between 215 and 413 amino acids in length. There is a conserved DSNGYS sequence motif.
Probab=11.12 E-value=1.9e+02 Score=27.26 Aligned_cols=33 Identities=24% Similarity=0.405 Sum_probs=28.4
Q ss_pred CCCCcccccceeeeccCCcccCccccccccceeeeecCcc
Q 017903 187 RFGKEIDGYDVVIRENGAPIQNYTDYVGKKSTFRLLNRGS 226 (364)
Q Consensus 187 ~~G~eID~~D~ViR~N~apv~gfe~DVG~KTt~~~~np~s 226 (364)
-||+.+|+-.|-||+++ +|.|.+..++++..+.
T Consensus 88 iC~R~tDSNGYSlR~~G-------~Dlg~~YrLrlv~~~~ 120 (181)
T PF12565_consen 88 ICGRYTDSNGYSLRIGG-------QDLGLRYRLRLVQRNG 120 (181)
T ss_pred ccccccCCCCcEEEECC-------eecCceEEEEEEEECC
Confidence 59999999999999985 5999999998876653
Done!