Query 017903
Match_columns 364
No_of_seqs 216 out of 679
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 06:46:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017903.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017903hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2wnf_A CMP-N-acetylneuraminate 100.0 4.4E-51 1.5E-55 394.9 12.8 245 65-346 15-297 (298)
2 1ro7_A Alpha-2,3/8-sialyltrans 99.8 3.1E-19 1.1E-23 169.4 9.3 166 172-344 2-209 (259)
3 2p2v_A Alpha-2,3-sialyltransfe 99.8 2.6E-18 9E-23 165.6 11.8 174 168-347 16-231 (288)
4 2wqq_A Alpha-2,3-/2,8-sialyltr 99.7 6.8E-17 2.3E-21 155.8 10.1 166 172-344 2-209 (291)
5 3lay_A Zinc resistance-associa 13.0 82 0.0028 27.8 1.9 20 32-51 66-85 (175)
6 2ook_A Hypothetical protein; s 8.6 1.2E+02 0.0042 24.6 1.3 17 168-184 82-98 (127)
7 3arc_M Photosystem II reaction 8.2 4.3E+02 0.015 17.7 3.6 24 4-28 9-32 (36)
8 2q3l_A Uncharacterized protein 7.0 1.2E+02 0.0041 24.6 0.5 15 169-183 83-97 (126)
9 3u5c_Z RP45, S31, YS23, 40S ri 6.7 1.8E+02 0.006 24.0 1.4 26 328-354 77-102 (108)
10 2v40_A Adenylosuccinate synthe 6.6 2E+02 0.0068 29.3 2.0 62 157-224 20-87 (459)
No 1
>2wnf_A CMP-N-acetylneuraminate-beta-galactosamide-alpha- 2,3-sialyltransferase; glycosyltransferase, disulfide bond, golgi apparatus, glycoprotein; HET: CG3 A2G GAL; 1.25A {Sus scrofa} PDB: 2wnb_A* 2wml_A
Probab=100.00 E-value=4.4e-51 Score=394.94 Aligned_cols=245 Identities=24% Similarity=0.398 Sum_probs=176.0
Q ss_pred CCCcccccccCCCCCCCCccCCCCCCccccccccchhHHHHHHHhhhcccccchHHHhhcCCCCccchhhhhhhcccccc
Q 017903 65 GEDYCQVKINFPKDTVPKWRDPNTGELESLSFDFNLCEAVAAWERVRNSTTILTKEYIDALPNGWEEYAWRRINKGVLLN 144 (364)
Q Consensus 65 ~~~~c~~~~~~~~~~~~~~~~~~~~~~e~~~~~f~~~~~~~~w~~~~~~~~~~t~e~~~~lp~g~~~~~w~~i~~~~~l~ 144 (364)
..-.|+..+.-+ +.|.|++..|... ...++|++... +++. .-.+|.+++...
T Consensus 15 ~~~~c~~~~~~~--~~s~~f~~~f~~~---------------------~~~~lt~~~~~-~~~~-~~~~w~~l~~~~--- 66 (298)
T 2wnf_A 15 RPCTCTRCIEEQ--RVSAWFDERFNRS---------------------MQPLLTAKNAH-LEED-TYKWWLRLQREK--- 66 (298)
T ss_dssp -CCSSSSCTTCS--SSCHHHHHHCCTT---------------------CCCBCCTTTCC-CCHH-HHHHHHHHHCCS---
T ss_pred CCCCCCcccccc--ccCHHHHhHhCCC---------------------CCceeccCcCC-CCHH-HHHHHHhccccc---
Confidence 455788878764 4578877777643 22355554422 1110 123577776532
Q ss_pred CCCchhHHHHHhhccCCCCCC-CCC---CCCcceEEecCCcCCCCCCCCCcccccceeeeccCCcccCccccccccceee
Q 017903 145 RCQNKTLCMEKLSLVLPETPP-YSP---RQFGRCAVIGNSGDLLKTRFGKEIDGYDVVIRENGAPIQNYTDYVGKKSTFR 220 (364)
Q Consensus 145 ~~~~~~~~~~~L~~~lP~~~p-~~~---~~~~~CAVVGNsGiL~~S~~G~eID~~D~ViR~N~apv~gfe~DVG~KTt~~ 220 (364)
...+...+.++|++++|+.+| +.. .+|++||||||||||+||+||+|||+||||||||+||++|||+|||+|||++
T Consensus 67 ~~~~~~~v~~~l~~~lP~~~~~~~~~~~~~~~~CAVVGNsGiL~~S~~G~eIDs~D~ViR~N~aP~~gye~DVG~KTt~~ 146 (298)
T 2wnf_A 67 QPNNLNDTIRELFQVVPGNVDPLLEKRLVSCRRCAVVGNSGNLKESYYGPQIDSHDFVLRMNKAPTEGFEADVGSKTTHH 146 (298)
T ss_dssp SCCCHHHHHHHHTTTSCSCCCTTTTGGGCSCCEEEEECCBGGGTTCCCHHHHHTSSEEEEETTCCCTTCHHHHCSCCSEE
T ss_pred ccccHHHHHHHHHHhCCCccccccccccCCCCeEEEECCccccCCCCccccccchhheeccCcCCcCcccccCccCceeE
Confidence 234566788999999999887 765 7999999999999999999999999999999999999999999999999999
Q ss_pred eecCcchhcccccccccccCcEEEEEccc--hHHHHH--------------------hhcccccccChHHHHhhhccC--
Q 017903 221 LLNRGSAKALDKVVELDETRKEVLIVKTT--IHDIMS--------------------KMIQEIPIKNPVYLMLGAAFG-- 276 (364)
Q Consensus 221 ~~np~s~~~l~~~~~l~~~~~~~l~vk~~--~~~~~~--------------------k~~~~v~i~nP~fl~~~~~~~-- 276 (364)
++||+++..+.+. ..+++++.. ...|+. ...+++.+.||.|+.....++
T Consensus 147 ~~n~~s~~~~~~~-------~~~v~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~~P~~~~~~~~~w~~ 219 (298)
T 2wnf_A 147 FVYPESFRELAQE-------VSMILVPFKTTDLEWVISATTTGRISHTYVPVPAKIKVKKEKILIYHPAFIKYVFDRWLQ 219 (298)
T ss_dssp EEBTTBCCCCCTT-------CEEEECCSSHHHHHHHHHHTTTCCCCBSSSBCCSCCCCCGGGEEEBCHHHHHHHHHHTST
T ss_pred EeccccccccCCC-------ceEEEeecCccchhhhhHhhcCCcccchhhhhhHHhhccCCeEEEeCHHHHHHHHHHHHH
Confidence 9999987543211 011211111 111111 012467789999987654332
Q ss_pred --CCCCChHHHHHHHHHhcCCeEEEeeeecCCCCCccccCCcCCCCC----CCCCc----hHHHHHHHHHcCCeEEEecC
Q 017903 277 --SAAKGTGLKALEFALSICDSVDMYGFTVDPGYKEWTRYFSESRKG----HTPLH----GRAYYHMMECLGVSLEVLSP 346 (364)
Q Consensus 277 --~~~pSTGllav~lAL~lCDeV~lYGF~pd~~y~~w~HYy~~~~~~----~~~lH----~~~~~~~Lh~~Gv~irlh~~ 346 (364)
..+||||++++++||++||||+||||++|. +..|+|||++.... ..+.| |+.+++.||+.|+ |++|++
T Consensus 220 ~~~~~pSTG~~~v~lAl~~CDeV~lYGF~~d~-~~~~~HYyd~~~~~~~~~~~~~H~~~~E~~~~~~Lh~~G~-i~l~~g 297 (298)
T 2wnf_A 220 GHGRYPSTGILSVIFSLHICDEVDLYGFGADS-KGNWHHYWENNPSAGAFRKTGVHDGDFESNVTTILASINK-IRIFKG 297 (298)
T ss_dssp TCSSSCCHHHHHHHHHHHHCSEEEEESCSCCT-TSCCCBTTC-----------CCSCHHHHHHHHHHHHHTTS-SEEECC
T ss_pred hCCCCCchhHHHHHHHHHhCCEEEEeeeccCC-CCCceecccCccccccccCCCCCCcHHHHHHHHHHHHCCC-EEEEeC
Confidence 358999999999999999999999999875 56689999988542 34677 4668999999999 999986
No 2
>1ro7_A Alpha-2,3/8-sialyltransferase; mixed alpha/beta, rossmann fold; HET: CSF; 1.80A {Campylobacter jejuni} SCOP: c.130.1.1 PDB: 1ro8_A* 2drj_A* 2x62_A* 2x61_A* 2x63_A*
Probab=99.78 E-value=3.1e-19 Score=169.40 Aligned_cols=166 Identities=11% Similarity=0.137 Sum_probs=105.0
Q ss_pred cceEEecCCcCCCCCCCCCcccccceeeeccCCcccC-ccccccccceeeeecCcchhc-cccccccccc---CcEEEEE
Q 017903 172 GRCAVIGNSGDLLKTRFGKEIDGYDVVIRENGAPIQN-YTDYVGKKSTFRLLNRGSAKA-LDKVVELDET---RKEVLIV 246 (364)
Q Consensus 172 ~~CAVVGNsGiL~~S~~G~eID~~D~ViR~N~apv~g-fe~DVG~KTt~~~~np~s~~~-l~~~~~l~~~---~~~~l~v 246 (364)
++|+||||||+|+...++. |++.+.|||+|.++.+. | |||+||++.++||+.+.. ......+... ..+.++.
T Consensus 2 k~c~ivGNGpsL~~id~~~-l~~~~~v~r~N~~~~~d~y--~VG~kt~~v~~NPsv~~~~~~~l~~~~~~~~~~~~~i~~ 78 (259)
T 1ro7_A 2 KKVIIAGNGPSLKEIDYSR-LPNDFDVFRCNQFYFEDKY--YLGKKCKAVFYNPSLFFEQYYTLKHLIQNQEYETELIMC 78 (259)
T ss_dssp CEEEEECCSGGGGCCCTTS-CCSSEEEEEETTGGGCSEE--TTCSEEEEEEECGGGHHHHHHHHHHHHHTTSCEEEEEEE
T ss_pred ceEEEEeCcHHHhhhhhhh-hccCCeEEEEeChhhcCcc--ccccccceEEECcHHHHHHHHHHHHHHhhcccccceEee
Confidence 6899999999999888885 88777799999997754 5 599999999999998632 1111111111 1122322
Q ss_pred cc--c--h-----HHHHHhhcccccccChHHHHhhh---------c-cCCCCCChHHHHHHHHHhc-CCeEEEeee----
Q 017903 247 KT--T--I-----HDIMSKMIQEIPIKNPVYLMLGA---------A-FGSAAKGTGLKALEFALSI-CDSVDMYGF---- 302 (364)
Q Consensus 247 k~--~--~-----~~~~~k~~~~v~i~nP~fl~~~~---------~-~~~~~pSTGllav~lAL~l-CDeV~lYGF---- 302 (364)
.. . . .+.+.+....+ ..++.++.... . ....+||||++|+.+|+.+ ||||++|||
T Consensus 79 ~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~l~~f~~~~~~~~~~~~~r~stGl~~~~lA~~lGckeIyLyG~D~~~ 157 (259)
T 1ro7_A 79 SNYNQAHLENENFVKTFYDYFPDA-HLGYDFFKQLKDFNAYFKFHEIYFNQRITSGVYMCAVAIALGYKEIYLSGIDFYQ 157 (259)
T ss_dssp CCCSCTTTSCHHHHHTHHHHSTTC-EETHHHHTTSHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHTCCEEEEESCCTTT
T ss_pred ecccccccchHHHHHHHHHhcCcc-ccCchhhhHHHHHHHhhhhcccccccCcCHHHHHHHHHHHCCCCEEEEEeEcCCC
Confidence 11 0 0 11122222233 33444443211 1 1256899999999999999 999999999
Q ss_pred ----ecCCCCC-----ccccCCcCCCCCCCCCchH----HHHHHHHHcCCeEEEe
Q 017903 303 ----TVDPGYK-----EWTRYFSESRKGHTPLHGR----AYYHMMECLGVSLEVL 344 (364)
Q Consensus 303 ----~pd~~y~-----~w~HYy~~~~~~~~~lH~~----~~~~~Lh~~Gv~irlh 344 (364)
+++.... ..+|||++... .++|.+ ..++.||+.|- ++|.
T Consensus 158 ~~~~~~Y~~~~~~~~~i~~hy~d~~~~--~~~H~m~~Ef~al~~Lh~~g~-v~I~ 209 (259)
T 1ro7_A 158 NGSSYAFDTKQKNLLKLAPNFKNDNSH--YIGHSKNTDIKALEFLEKTYK-IKLY 209 (259)
T ss_dssp TSSCCSSCCCCHHHHHHCGGGGSSCCC--CTTCCHHHHHHHHHHHHHHHT-CEEE
T ss_pred CCCCcCCCCCcccccccCcccccccCC--ccccCchHHHHHHHHHHHhCC-eEEE
Confidence 7654322 22588877653 345532 33688999983 4443
No 3
>2p2v_A Alpha-2,3-sialyltransferase; mixed alpha-beta; HET: CSF; 1.85A {Campylobacter jejuni} PDB: 2p56_A
Probab=99.76 E-value=2.6e-18 Score=165.64 Aligned_cols=174 Identities=14% Similarity=0.162 Sum_probs=106.9
Q ss_pred CCCCcceEEecCCcCCCCCCCCCcccccceeeeccCCccc-CccccccccceeeeecCcchhc-cccccccccc---CcE
Q 017903 168 PRQFGRCAVIGNSGDLLKTRFGKEIDGYDVVIRENGAPIQ-NYTDYVGKKSTFRLLNRGSAKA-LDKVVELDET---RKE 242 (364)
Q Consensus 168 ~~~~~~CAVVGNsGiL~~S~~G~eID~~D~ViR~N~apv~-gfe~DVG~KTt~~~~np~s~~~-l~~~~~l~~~---~~~ 242 (364)
....++|+||||||+|+++. |.+||+.|+|||+|.++.. .| ++|++|.+.+++|+.+.. .+....+... ..+
T Consensus 16 ~~~~~~c~IvGNGPSL~~~~-~~~i~~~~~v~rvN~~~~~~~~--~~g~~~~yv~~dp~~~~~~~~~l~~l~~~~~y~~~ 92 (288)
T 2p2v_A 16 SKNMQNIIIAGNGPSLKNIN-YKRLPREYDVFRCNQFYFEDKY--YLGKKIKAVFFNPGVFLQQYHTAKQLILKNEYEIK 92 (288)
T ss_dssp CTTCCEEEEECCSGGGGGCC-GGGSCSSCEEEEETTGGGCSBC--TTCSEESEEEECGGGHHHHHHHHHHHHHTTSCEEC
T ss_pred cCCCCeEEEEecChhhcCCC-chhhccCCEEEEEcChHhcCcc--cccccceEEEECcHHHHHHHHHHHhhhhccccccc
Confidence 44579999999999999998 9999999999999999996 46 499999999999987642 1111111000 011
Q ss_pred EEEEccc---------hHHHHHhhcccccccChHHHHh----------hhccCCCCCChHHHHHHHHHhc-CCeEEEeee
Q 017903 243 VLIVKTT---------IHDIMSKMIQEIPIKNPVYLML----------GAAFGSAAKGTGLKALEFALSI-CDSVDMYGF 302 (364)
Q Consensus 243 ~l~vk~~---------~~~~~~k~~~~v~i~nP~fl~~----------~~~~~~~~pSTGllav~lAL~l-CDeV~lYGF 302 (364)
.+..... ..+.+.+....+.+.. .++.. ...+...++|||++|+.+|+.+ ||||++|||
T Consensus 93 ~i~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~-~~l~~l~~fw~~~~~~~~~~~~r~StGl~~l~iA~~lGckeIyLyGf 171 (288)
T 2p2v_A 93 NIFCSTFNLPFIESNDFLHQFYNFFPDAKLGY-EVIENLKEFYAYIKYNEIYFNKRITSGVYMCAIAIALGYKTIYLCGI 171 (288)
T ss_dssp CEEECCCCCTTTSCHHHHHHHHHHCTTCEETH-HHHTTSHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHTCCEEEEESC
T ss_pred EEEeeecccccchHHHHHHHHHHhCCCceEee-hhhhHHHHHhhhhhhcccccccCcchHHHHHHHHHHcCCCEEEEeee
Confidence 1211110 0111222221221111 22211 1112356899999999999999 999999999
Q ss_pred ecCCCCCccccCCcCCCC------------CCCCCchHH----HHHHHHHc-CCeEEEecCC
Q 017903 303 TVDPGYKEWTRYFSESRK------------GHTPLHGRA----YYHMMECL-GVSLEVLSPS 347 (364)
Q Consensus 303 ~pd~~y~~w~HYy~~~~~------------~~~~lH~~~----~~~~Lh~~-Gv~irlh~~~ 347 (364)
|.+.....|+|++... .....|.++ -++.||+. ||+|-=-+|.
T Consensus 172 --D~~~~~~~yhYd~~~~~~~~~~~~~~~~k~~~~H~m~~e~~al~~Lh~~g~v~iynls~~ 231 (288)
T 2p2v_A 172 --DFYEGDVIYPFEAMSTNIKTIFPGIKDFKPSNCHSKEYDIEALKLLKSIYKVNIYALCDD 231 (288)
T ss_dssp --CTTCSSCCCSSCSSCHHHHHHSCC--CCCCCTTCCHHHHHHHHHHHHHHHTCEEEECCTT
T ss_pred --cCCCCCCcccccCccccccccccccccccCCcccCCHHHHHHHHHHHHhcCceEEEcCCC
Confidence 3322233333554321 134567543 36889999 5654444443
No 4
>2wqq_A Alpha-2,3-/2,8-sialyltransferase; GTA, cstii, glycosyltransfer; HET: CSF; 2.25A {Campylobacter jejuni}
Probab=99.68 E-value=6.8e-17 Score=155.79 Aligned_cols=166 Identities=11% Similarity=0.080 Sum_probs=101.3
Q ss_pred cceEEecCCcCCCCCCCCCcccccceeeeccCCccc-CccccccccceeeeecCcchhc-cccccccc-c-c-CcEEEEE
Q 017903 172 GRCAVIGNSGDLLKTRFGKEIDGYDVVIRENGAPIQ-NYTDYVGKKSTFRLLNRGSAKA-LDKVVELD-E-T-RKEVLIV 246 (364)
Q Consensus 172 ~~CAVVGNsGiL~~S~~G~eID~~D~ViR~N~apv~-gfe~DVG~KTt~~~~np~s~~~-l~~~~~l~-~-~-~~~~l~v 246 (364)
++|+||||||+|.++. +.+||++|+|||+|.++.. .| ++|++|.+.+++|+.... ......+. . . ..+.++.
T Consensus 2 ~~c~IvGNGpSL~~~~-~~~i~~~~~vi~vN~~~~~~~~--~~g~~~~yv~~dp~~~~~~~~~l~~~~~~~~~~~~~i~~ 78 (291)
T 2wqq_A 2 KKVIIAGNGPSLKEID-YSRLPNDFDVFRCNQFYFEDKY--YLGKKCKAVFYNPSLFFEQYYTLKHLIQNQEYETELIMC 78 (291)
T ss_dssp CEEEEECCSGGGGCCC-GGGCCSSEEEEEETTGGGCSEE--TTCSEEEEEEECGGGHHHHHHHHHHHHHTTSCEEEEEEE
T ss_pred CcEEEEeCchhhccCc-hhhhccCCeEEEEcCccccccc--ccccCccEEEEchHHHHHHHHHHHHHHhccccccceeee
Confidence 6899999999999997 9999999999999999996 46 499999999999986642 21110011 1 1 1122222
Q ss_pred ccc-h-----HHH---HHhhcccccccChHHHHhhhc----------cCCCCCChHHHHHHHHHhc-CCeEEEeee----
Q 017903 247 KTT-I-----HDI---MSKMIQEIPIKNPVYLMLGAA----------FGSAAKGTGLKALEFALSI-CDSVDMYGF---- 302 (364)
Q Consensus 247 k~~-~-----~~~---~~k~~~~v~i~nP~fl~~~~~----------~~~~~pSTGllav~lAL~l-CDeV~lYGF---- 302 (364)
... . ... +......+ ...+.++..... ....+||||++|+.+|+.+ |+||++|||
T Consensus 79 ~~~~~~~~~~~~~~~~l~~~~~~v-~~~~~~l~~l~~~~~~~~~~~~~~~~r~stGl~~lslA~~lGckeIyLyGfD~~~ 157 (291)
T 2wqq_A 79 SNYNQAHLENENFVKTFYDYFPDA-HLGYDFFKQLKDFNAYFKFHEIQFNQRITSGVYMCAVAIALGYKEIYLSGIDFYQ 157 (291)
T ss_dssp CCCSCTTTSCHHHHHTHHHHSTTC-EETHHHHTTCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHTTCCEEEEESCCCC-
T ss_pred eeccchhhHHHHHHHHHHhhcCce-eccHhhhhhHHHHhhhhhccccccccCccHHHHHHHHHHHcCCCEEEEEeecCCC
Confidence 111 0 011 11111222 223333322111 1246899999999999999 999999999
Q ss_pred ----ecCCCCC-----ccccCCcCCCCCCCCCch----HHHHHHHHHcCCeEEEe
Q 017903 303 ----TVDPGYK-----EWTRYFSESRKGHTPLHG----RAYYHMMECLGVSLEVL 344 (364)
Q Consensus 303 ----~pd~~y~-----~w~HYy~~~~~~~~~lH~----~~~~~~Lh~~Gv~irlh 344 (364)
+++.... ..+|||++... .+.|. ...++.||+.|- +++.
T Consensus 158 ~~~~~~y~~~~~~~~~i~~hy~d~~~~--~~~H~mp~ef~al~~Lh~~g~-v~vy 209 (291)
T 2wqq_A 158 NGSSYAFDTKQKNLLKLAPNFKNDNSH--YIGHSKNTDIKALEFLEKTYK-IKLY 209 (291)
T ss_dssp ----CCSCCCCHHHHHHCGGGC---------CCCHHHHHHHHHHHHHHHT-CEEE
T ss_pred CCCCCcCcCCccccccCCCccccccCC--CCCcCCHHHHHHHHHHHHhcC-eeEE
Confidence 5443211 12577776632 23452 334789999993 4544
No 5
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=12.98 E-value=82 Score=27.85 Aligned_cols=20 Identities=5% Similarity=0.247 Sum_probs=15.5
Q ss_pred CCCCccchHHHHHHHHHHhh
Q 017903 32 NRISDEDYEALESLQNAFRK 51 (364)
Q Consensus 32 ~~~~~~~~~~l~~~~~~~~~ 51 (364)
.+||+||.+.+++++..|++
T Consensus 66 LnLT~EQq~ql~~I~~e~r~ 85 (175)
T 3lay_A 66 SPLTTEQQATAQKIYDDYYT 85 (175)
T ss_dssp --CCHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHH
Confidence 67999999999999777763
No 6
>2ook_A Hypothetical protein; structural genomics, JOIN for structural genomics, JCSG, protein structure initiative unknown function; HET: MSE; 1.80A {Shewanella frigidimarina} SCOP: c.13.2.2
Probab=8.60 E-value=1.2e+02 Score=24.59 Aligned_cols=17 Identities=29% Similarity=0.415 Sum_probs=14.1
Q ss_pred CCCCcceEEecCCcCCC
Q 017903 168 PRQFGRCAVIGNSGDLL 184 (364)
Q Consensus 168 ~~~~~~CAVVGNsGiL~ 184 (364)
...+.||||||+..-+.
T Consensus 82 ~~~~~RiAvV~d~~W~~ 98 (127)
T 2ook_A 82 KSEFERVAILGNKDWQE 98 (127)
T ss_dssp SCCEEEEEEECCSSCCT
T ss_pred HhcCCEEEEEcChHHHH
Confidence 34689999999998874
No 7
>3arc_M Photosystem II reaction center protein M; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_M* 2axt_M* 3bz1_M* 3bz2_M* 3kzi_M* 3prq_M* 3prr_M* 3a0b_M* 3a0h_M*
Probab=8.23 E-value=4.3e+02 Score=17.72 Aligned_cols=24 Identities=21% Similarity=0.415 Sum_probs=17.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhccC
Q 017903 4 LQFAFLLALASGFAAILIYITGVSN 28 (364)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~ 28 (364)
+-.+|++.+...|++ .+|++.-++
T Consensus 9 iAt~Lfi~iPt~FLl-ilYvqT~s~ 32 (36)
T 3arc_M 9 IATALFVLVPSVFLI-ILYVQTESQ 32 (36)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHHHTS
T ss_pred HHHHHHHHHHHHHHH-HHhheeccc
Confidence 445677788888888 668888644
No 8
>2q3l_A Uncharacterized protein; SPOIIAA-like fold, structural genomics, joint center for STR genomics, JCSG, protein structure initiative; HET: MSE; 2.25A {Shewanella loihica pv-4} SCOP: c.13.2.2
Probab=6.99 E-value=1.2e+02 Score=24.60 Aligned_cols=15 Identities=33% Similarity=0.574 Sum_probs=12.2
Q ss_pred CCCcceEEecCCcCC
Q 017903 169 RQFGRCAVIGNSGDL 183 (364)
Q Consensus 169 ~~~~~CAVVGNsGiL 183 (364)
..+.||||||+..-+
T Consensus 83 ~~~~RiAvV~d~~W~ 97 (126)
T 2q3l_A 83 KEFKRVAIIGQGELQ 97 (126)
T ss_dssp GGEEEEEEECCSHHH
T ss_pred hcCCEEEEEcChHHH
Confidence 468999999998654
No 9
>3u5c_Z RP45, S31, YS23, 40S ribosomal protein S25-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_V 3o30_Q 3o2z_Q 3u5g_Z
Probab=6.68 E-value=1.8e+02 Score=24.03 Aligned_cols=26 Identities=19% Similarity=0.225 Sum_probs=22.5
Q ss_pred HHHHHHHHHcCCeEEEecCCccccccc
Q 017903 328 RAYYHMMECLGVSLEVLSPSELQSSLI 354 (364)
Q Consensus 328 ~~~~~~Lh~~Gv~irlh~~~~~~~~~~ 354 (364)
+..++.|++.|+ |++++..+++.++.
T Consensus 77 R~aLreL~~kGl-Ik~V~kh~~q~IYT 102 (108)
T 3u5c_Z 77 RIALRHLEKEGI-IKPISKHSKQAIYT 102 (108)
T ss_dssp HHHHHHHSSSSS-CEEEECCSSCCEEE
T ss_pred HHHHHHHHHCCC-EEEEecCCCEEEEe
Confidence 556999999999 99999988887764
No 10
>2v40_A Adenylosuccinate synthetase isozyme 2; ligase, purine biosynthesis, metal- binding, purine metabolism, nucleotide-binding, GDP, ADSS2, magnesium; HET: GDP; 1.9A {Homo sapiens} PDB: 1iwe_A* 1j4b_A 1lny_A* 1lon_A* 1loo_A* 1mez_A* 1mf0_A* 1mf1_A* 2dgn_A*
Probab=6.63 E-value=2e+02 Score=29.28 Aligned_cols=62 Identities=27% Similarity=0.306 Sum_probs=36.0
Q ss_pred hccCCCCCCCCCCCCcce-EEecCCcCCCCCCCCCccc----ccceeeeccCCcccCccccc-cccceeeeecC
Q 017903 157 SLVLPETPPYSPRQFGRC-AVIGNSGDLLKTRFGKEID----GYDVVIRENGAPIQNYTDYV-GKKSTFRLLNR 224 (364)
Q Consensus 157 ~~~lP~~~p~~~~~~~~C-AVVGNsGiL~~S~~G~eID----~~D~ViR~N~apv~gfe~DV-G~KTt~~~~np 224 (364)
|.-.|...|+. .++ +|||-...= .+-|+-+| .+|+|.|+|..+-.|+.--+ |.|..++.+-.
T Consensus 20 ~~~~~~~~~~~----~~v~vVvG~QWGD--EGKGKivD~La~~~dvVvR~qGG~NAGHTVv~~g~k~~lhliPS 87 (459)
T 2v40_A 20 FQSMPRARPGG----NRVTVVLGAQWGD--EGKGKVVDLLAQDADIVCRCQGGNNAGHTVVVDSVEYDFHLLPS 87 (459)
T ss_dssp ---------CC----CCEEEEEESSSSC--SSHHHHHHHHHTTCSEEEECSBCSCCCEEEEETTEEEEESSSCG
T ss_pred ecCCCccCCCC----eeEEEEEecCcCC--CCCceEEEEeccCCCEEeecCccCCCCcEEEECCEEEEEEccCc
Confidence 44456555553 224 888865542 35566565 68999999999998876544 55777776633
Done!