Query 017904
Match_columns 364
No_of_seqs 151 out of 1278
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 06:47:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017904.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017904hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ehx_A Tetraacyldisaccharide 4 100.0 3.6E-82 1.2E-86 616.7 24.1 290 27-360 2-313 (315)
2 2wsm_A Hydrogenase expression/ 98.5 7.4E-07 2.5E-11 79.6 10.2 144 63-220 33-189 (221)
3 3p32_A Probable GTPase RV1496/ 98.2 6.9E-05 2.4E-09 72.9 17.4 143 60-212 78-242 (355)
4 1nij_A Hypothetical protein YJ 98.1 7.7E-07 2.6E-11 85.7 1.8 152 60-228 3-189 (318)
5 2hf9_A Probable hydrogenase ni 98.0 2.7E-05 9.4E-10 69.5 11.0 145 62-220 40-199 (226)
6 3dm5_A SRP54, signal recogniti 98.0 2.9E-05 9.9E-10 78.4 12.2 152 62-226 101-274 (443)
7 3kl4_A SRP54, signal recogniti 97.8 0.00011 3.7E-09 74.1 12.1 218 62-303 98-345 (433)
8 2www_A Methylmalonic aciduria 97.6 0.00044 1.5E-08 67.3 12.4 134 59-203 72-228 (349)
9 2j37_W Signal recognition part 97.5 0.001 3.4E-08 68.2 14.5 128 62-201 102-254 (504)
10 2xxa_A Signal recognition part 97.3 0.0018 6.2E-08 65.0 12.2 102 62-166 101-225 (433)
11 1xjc_A MOBB protein homolog; s 97.2 0.00033 1.1E-08 61.8 5.6 41 61-103 4-44 (169)
12 4dzz_A Plasmid partitioning pr 97.2 0.00034 1.2E-08 61.2 5.1 121 62-214 2-123 (206)
13 2p67_A LAO/AO transport system 97.0 0.0043 1.5E-07 59.8 11.4 132 61-205 56-212 (341)
14 3q9l_A Septum site-determining 96.9 0.0007 2.4E-08 61.5 4.9 45 62-107 3-47 (260)
15 2r8r_A Sensor protein; KDPD, P 96.8 0.0025 8.6E-08 58.8 7.4 36 62-100 8-43 (228)
16 1g3q_A MIND ATPase, cell divis 96.7 0.0013 4.4E-08 59.0 4.9 41 62-103 3-43 (237)
17 2afh_E Nitrogenase iron protei 96.7 0.0012 4E-08 61.7 4.8 40 61-102 2-41 (289)
18 3cwq_A Para family chromosome 96.7 0.0011 3.8E-08 59.3 4.4 39 62-102 1-39 (209)
19 1j8m_F SRP54, signal recogniti 96.7 0.0082 2.8E-07 57.1 10.7 101 63-166 100-224 (297)
20 3k9g_A PF-32 protein; ssgcid, 96.7 0.0012 4.1E-08 60.7 4.8 42 60-103 26-67 (267)
21 1cp2_A CP2, nitrogenase iron p 96.7 0.0011 3.9E-08 60.7 4.5 39 62-102 2-40 (269)
22 1byi_A Dethiobiotin synthase; 96.7 0.0013 4.5E-08 58.5 4.7 36 62-98 2-37 (224)
23 2ffh_A Protein (FFH); SRP54, s 96.7 0.011 3.8E-07 59.2 11.7 129 62-199 99-249 (425)
24 2ph1_A Nucleotide-binding prot 96.7 0.0016 5.5E-08 60.0 5.1 42 61-103 18-59 (262)
25 2xj4_A MIPZ; replication, cell 96.6 0.0017 5.7E-08 60.8 5.0 40 62-102 5-44 (286)
26 3e70_C DPA, signal recognition 96.6 0.015 5.1E-07 56.1 11.8 146 63-225 132-302 (328)
27 1wcv_1 SOJ, segregation protei 96.6 0.0013 4.3E-08 60.4 4.0 40 61-101 6-45 (257)
28 3ea0_A ATPase, para family; al 96.6 0.0015 5.1E-08 58.8 4.5 41 61-102 4-45 (245)
29 2v3c_C SRP54, signal recogniti 96.6 0.025 8.5E-07 56.7 13.5 126 62-200 101-251 (432)
30 1hyq_A MIND, cell division inh 96.5 0.0021 7.2E-08 58.7 4.7 40 62-102 3-42 (263)
31 2oze_A ORF delta'; para, walke 96.4 0.0019 6.7E-08 60.2 4.2 41 62-102 35-76 (298)
32 3end_A Light-independent proto 96.4 0.0026 9E-08 59.8 5.1 41 60-102 40-80 (307)
33 1np6_A Molybdopterin-guanine d 96.4 0.0041 1.4E-07 54.7 5.7 40 61-102 6-45 (174)
34 1zu4_A FTSY; GTPase, signal re 96.3 0.011 3.8E-07 56.9 8.9 39 62-102 106-144 (320)
35 1yrb_A ATP(GTP)binding protein 96.2 0.0044 1.5E-07 56.3 5.1 40 61-103 14-53 (262)
36 2px0_A Flagellar biosynthesis 96.1 0.0088 3E-07 56.8 7.0 36 63-101 108-144 (296)
37 3pg5_A Uncharacterized protein 96.1 0.0026 8.7E-08 62.0 3.3 41 62-103 2-42 (361)
38 3bfv_A CAPA1, CAPB2, membrane 96.1 0.0093 3.2E-07 55.7 7.0 65 33-102 58-122 (271)
39 3ez2_A Plasmid partition prote 96.0 0.0057 1.9E-07 59.9 5.3 41 60-101 107-153 (398)
40 3fkq_A NTRC-like two-domain pr 96.0 0.006 2E-07 59.5 5.1 41 59-100 141-181 (373)
41 3la6_A Tyrosine-protein kinase 95.8 0.011 3.9E-07 55.7 6.3 68 31-103 66-133 (286)
42 3cio_A ETK, tyrosine-protein k 95.8 0.012 4.2E-07 55.7 6.4 65 33-102 80-144 (299)
43 3fwy_A Light-independent proto 95.8 0.008 2.7E-07 57.7 5.2 38 61-100 48-85 (314)
44 3kjh_A CO dehydrogenase/acetyl 95.8 0.004 1.4E-07 55.7 2.6 37 64-102 3-39 (254)
45 3ez9_A Para; DNA binding, wing 95.7 0.0057 2E-07 60.1 3.5 41 60-101 110-156 (403)
46 1vma_A Cell division protein F 95.6 0.042 1.4E-06 52.5 9.3 37 63-101 106-142 (306)
47 3ug7_A Arsenical pump-driving 95.6 0.009 3.1E-07 57.9 4.5 40 61-101 25-64 (349)
48 2qm8_A GTPase/ATPase; G protei 95.6 0.066 2.3E-06 51.6 10.5 128 62-201 56-207 (337)
49 1ls1_A Signal recognition part 95.5 0.045 1.5E-06 51.8 8.9 33 71-103 106-138 (295)
50 3zq6_A Putative arsenical pump 95.3 0.015 5.1E-07 55.6 4.8 40 62-102 14-53 (324)
51 3iqw_A Tail-anchored protein t 95.2 0.014 4.9E-07 56.4 4.5 38 62-101 17-54 (334)
52 2woo_A ATPase GET3; tail-ancho 95.0 0.019 6.6E-07 55.0 4.8 39 62-102 20-58 (329)
53 3io3_A DEHA2D07832P; chaperone 94.7 0.029 1E-06 54.5 5.1 39 61-101 18-58 (348)
54 2z0h_A DTMP kinase, thymidylat 94.6 0.059 2E-06 46.3 6.4 36 63-102 3-38 (197)
55 3iev_A GTP-binding protein ERA 94.5 0.037 1.3E-06 52.4 5.2 121 60-214 10-150 (308)
56 2woj_A ATPase GET3; tail-ancho 94.1 0.037 1.3E-06 53.8 4.5 39 62-102 19-59 (354)
57 1ihu_A Arsenical pump-driving 94.1 0.047 1.6E-06 56.2 5.4 38 62-101 9-46 (589)
58 3nrs_A Dihydrofolate:folylpoly 94.0 0.56 1.9E-05 46.5 12.9 52 43-101 37-88 (437)
59 1nks_A Adenylate kinase; therm 93.9 0.058 2E-06 46.0 4.9 33 63-98 4-36 (194)
60 2w58_A DNAI, primosome compone 93.9 0.064 2.2E-06 46.6 5.2 35 61-98 55-89 (202)
61 2yhs_A FTSY, cell division pro 93.5 1 3.4E-05 46.0 13.9 35 63-100 296-330 (503)
62 1nn5_A Similar to deoxythymidy 93.5 0.077 2.6E-06 46.3 5.0 38 60-101 9-46 (215)
63 2wwf_A Thymidilate kinase, put 93.5 0.098 3.3E-06 45.6 5.6 39 60-102 10-48 (212)
64 1gtv_A TMK, thymidylate kinase 93.4 0.022 7.7E-07 49.8 1.3 34 63-99 3-36 (214)
65 2pbr_A DTMP kinase, thymidylat 93.4 0.07 2.4E-06 45.6 4.4 35 63-101 3-37 (195)
66 3igf_A ALL4481 protein; two-do 93.3 0.037 1.3E-06 54.4 2.8 35 63-99 4-38 (374)
67 2yvu_A Probable adenylyl-sulfa 93.2 0.13 4.3E-06 44.3 5.8 33 63-98 16-48 (186)
68 1g5t_A COB(I)alamin adenosyltr 92.8 0.39 1.3E-05 43.1 8.6 34 62-98 30-63 (196)
69 3lv8_A DTMP kinase, thymidylat 92.7 0.19 6.6E-06 46.0 6.7 39 61-102 28-66 (236)
70 3a4m_A L-seryl-tRNA(SEC) kinas 92.6 0.12 4.1E-06 47.4 5.1 35 62-98 5-39 (260)
71 3hjn_A DTMP kinase, thymidylat 92.4 0.13 4.3E-06 45.6 4.8 36 64-102 3-38 (197)
72 3of5_A Dethiobiotin synthetase 92.3 0.13 4.3E-06 46.9 4.8 36 62-98 5-40 (228)
73 3qxc_A Dethiobiotin synthetase 92.1 0.13 4.6E-06 47.3 4.8 37 61-98 21-57 (242)
74 3fgn_A Dethiobiotin synthetase 91.7 0.17 5.8E-06 46.9 4.9 37 61-98 26-62 (251)
75 3bos_A Putative DNA replicatio 91.6 0.21 7.2E-06 43.7 5.3 36 60-98 52-87 (242)
76 4edh_A DTMP kinase, thymidylat 91.4 0.17 5.8E-06 45.5 4.5 37 62-102 8-44 (213)
77 1kht_A Adenylate kinase; phosp 91.1 0.23 7.8E-06 42.2 4.9 33 63-98 6-38 (192)
78 1xx6_A Thymidine kinase; NESG, 91.0 0.24 8.3E-06 43.9 5.0 34 62-98 10-43 (191)
79 2qgz_A Helicase loader, putati 90.7 0.26 8.8E-06 46.7 5.3 36 60-98 152-188 (308)
80 2pez_A Bifunctional 3'-phospho 90.7 0.26 8.8E-06 42.0 4.8 33 62-97 7-39 (179)
81 4tmk_A Protein (thymidylate ki 90.6 0.28 9.4E-06 44.2 5.1 38 63-102 5-42 (213)
82 2kjq_A DNAA-related protein; s 90.5 0.29 1E-05 41.2 4.9 34 61-97 37-70 (149)
83 2v54_A DTMP kinase, thymidylat 90.4 0.17 5.7E-06 43.8 3.4 33 60-97 4-36 (204)
84 1rz3_A Hypothetical protein rb 90.4 0.28 9.4E-06 43.0 4.8 35 63-99 24-58 (201)
85 3upu_A ATP-dependent DNA helic 90.4 0.25 8.6E-06 49.2 5.1 36 62-100 47-83 (459)
86 1ihu_A Arsenical pump-driving 90.3 0.25 8.4E-06 50.8 5.1 37 63-101 329-365 (589)
87 3ec2_A DNA replication protein 90.3 0.21 7.3E-06 42.5 3.9 36 60-98 38-74 (180)
88 3j2k_7 ERF3, eukaryotic polype 90.3 1.1 3.7E-05 44.5 9.6 24 60-86 17-40 (439)
89 3t15_A Ribulose bisphosphate c 89.9 1.4 4.9E-05 40.9 9.6 36 57-98 33-68 (293)
90 3ld9_A DTMP kinase, thymidylat 89.9 0.25 8.6E-06 45.0 4.2 38 63-102 23-61 (223)
91 3tqc_A Pantothenate kinase; bi 89.9 0.88 3E-05 43.6 8.2 71 27-101 59-133 (321)
92 2orw_A Thymidine kinase; TMTK, 89.7 0.34 1.2E-05 42.3 4.8 35 63-100 6-40 (184)
93 1w78_A FOLC bifunctional prote 89.7 0.33 1.1E-05 47.8 5.2 38 60-101 48-85 (422)
94 1jbk_A CLPB protein; beta barr 89.6 0.38 1.3E-05 40.0 4.9 27 60-89 43-69 (195)
95 2plr_A DTMP kinase, probable t 89.5 0.38 1.3E-05 41.5 4.9 33 62-99 6-38 (213)
96 3e1s_A Exodeoxyribonuclease V, 89.4 0.32 1.1E-05 50.2 5.1 36 62-100 206-241 (574)
97 1jbw_A Folylpolyglutamate synt 89.4 0.37 1.3E-05 47.6 5.3 38 60-101 38-75 (428)
98 2b8t_A Thymidine kinase; deoxy 89.3 0.4 1.4E-05 43.6 5.1 36 63-101 15-50 (223)
99 3hr8_A Protein RECA; alpha and 89.3 1.5 5.1E-05 42.6 9.5 40 72-114 70-109 (356)
100 1rj9_A FTSY, signal recognitio 89.2 0.46 1.6E-05 45.1 5.7 36 63-101 104-140 (304)
101 1a7j_A Phosphoribulokinase; tr 89.1 0.28 9.7E-06 46.0 4.1 35 62-98 6-40 (290)
102 3p26_A Elongation factor 1 alp 89.0 0.23 7.9E-06 49.9 3.6 25 59-86 32-56 (483)
103 3kb2_A SPBC2 prophage-derived 89.0 0.24 8.2E-06 41.3 3.2 22 63-87 4-25 (173)
104 2f1r_A Molybdopterin-guanine d 88.9 0.23 7.8E-06 43.2 3.0 35 63-100 5-39 (171)
105 2orv_A Thymidine kinase; TP4A 88.9 1.9 6.3E-05 39.7 9.2 75 63-147 22-99 (234)
106 3c8u_A Fructokinase; YP_612366 88.6 0.51 1.7E-05 41.4 5.2 35 62-99 23-58 (208)
107 1l8q_A Chromosomal replication 88.6 0.53 1.8E-05 44.1 5.6 37 59-98 36-72 (324)
108 3b9q_A Chloroplast SRP recepto 88.3 0.48 1.6E-05 44.9 5.1 36 63-101 103-138 (302)
109 4hlc_A DTMP kinase, thymidylat 88.0 0.48 1.6E-05 42.2 4.6 36 63-103 5-40 (205)
110 2cdn_A Adenylate kinase; phosp 87.9 0.39 1.3E-05 41.7 3.9 35 50-87 10-44 (201)
111 3syl_A Protein CBBX; photosynt 87.7 0.67 2.3E-05 42.7 5.6 38 51-92 59-96 (309)
112 3v9p_A DTMP kinase, thymidylat 87.6 0.82 2.8E-05 41.6 6.0 38 61-102 26-67 (227)
113 1m7g_A Adenylylsulfate kinase; 87.5 0.45 1.5E-05 41.8 4.1 34 62-98 27-61 (211)
114 1odf_A YGR205W, hypothetical 3 87.4 0.39 1.3E-05 45.2 3.9 36 62-99 32-70 (290)
115 2og2_A Putative signal recogni 87.4 0.56 1.9E-05 45.7 5.1 36 63-101 160-195 (359)
116 3uie_A Adenylyl-sulfate kinase 87.4 0.66 2.3E-05 40.3 5.1 31 62-94 26-56 (200)
117 2dr3_A UPF0273 protein PH0284; 86.9 0.69 2.4E-05 40.8 5.0 35 63-100 26-60 (247)
118 1e2k_A Thymidine kinase; trans 86.6 0.25 8.6E-06 47.8 2.0 35 63-102 6-40 (331)
119 2vos_A Folylpolyglutamate synt 86.5 0.68 2.3E-05 46.7 5.3 38 60-101 63-100 (487)
120 1osn_A Thymidine kinase, VZV-T 86.4 0.2 6.9E-06 48.7 1.2 36 63-103 15-51 (341)
121 4b3f_X DNA-binding protein smu 86.4 0.44 1.5E-05 49.6 3.9 43 62-107 207-249 (646)
122 1j6u_A UDP-N-acetylmuramate-al 86.3 0.68 2.3E-05 46.4 5.1 37 61-101 114-150 (469)
123 1e8c_A UDP-N-acetylmuramoylala 86.1 0.72 2.5E-05 46.5 5.2 36 60-99 107-142 (498)
124 2p65_A Hypothetical protein PF 86.1 0.65 2.2E-05 38.6 4.2 27 60-89 43-69 (187)
125 2jaq_A Deoxyguanosine kinase; 86.1 0.45 1.6E-05 40.7 3.2 23 63-88 3-25 (205)
126 4fcw_A Chaperone protein CLPB; 86.0 0.76 2.6E-05 42.2 5.0 43 52-97 39-81 (311)
127 4eaq_A DTMP kinase, thymidylat 85.9 1.5 5E-05 39.5 6.7 38 60-102 26-63 (229)
128 2qby_B CDC6 homolog 3, cell di 85.8 1.1 3.6E-05 42.4 6.0 36 60-98 45-88 (384)
129 2chg_A Replication factor C sm 85.6 0.45 1.6E-05 40.5 3.0 30 62-94 40-69 (226)
130 3n70_A Transport activator; si 85.5 0.6 2E-05 38.6 3.6 34 59-95 23-56 (145)
131 1u94_A RECA protein, recombina 85.4 0.83 2.9E-05 44.3 5.1 36 63-101 66-101 (356)
132 3mca_A HBS1, elongation factor 85.4 0.59 2E-05 48.5 4.2 23 62-87 179-201 (592)
133 1uj2_A Uridine-cytidine kinase 85.3 0.6 2E-05 42.3 3.8 34 63-99 24-63 (252)
134 2x5o_A UDP-N-acetylmuramoylala 85.0 0.97 3.3E-05 44.7 5.5 36 60-99 103-138 (439)
135 1o5z_A Folylpolyglutamate synt 84.9 0.65 2.2E-05 46.2 4.1 35 60-98 51-85 (442)
136 3t61_A Gluconokinase; PSI-biol 84.6 0.75 2.6E-05 39.8 3.9 23 62-87 20-42 (202)
137 1ega_A Protein (GTP-binding pr 84.6 1.3 4.6E-05 41.4 6.0 28 62-98 10-37 (301)
138 1tev_A UMP-CMP kinase; ploop, 84.5 0.56 1.9E-05 39.7 3.1 23 62-87 5-27 (196)
139 1qf9_A UMP/CMP kinase, protein 84.5 0.67 2.3E-05 39.2 3.5 23 62-87 8-30 (194)
140 2w0m_A SSO2452; RECA, SSPF, un 84.4 0.88 3E-05 39.5 4.4 36 63-101 26-61 (235)
141 2ce2_X GTPase HRAS; signaling 84.3 0.56 1.9E-05 37.9 2.9 22 61-85 4-25 (166)
142 3lw7_A Adenylate kinase relate 84.3 0.76 2.6E-05 37.8 3.7 26 62-93 2-27 (179)
143 1njg_A DNA polymerase III subu 84.3 1.3 4.3E-05 38.0 5.3 29 59-90 44-72 (250)
144 1of1_A Thymidine kinase; trans 84.2 0.5 1.7E-05 46.5 2.9 36 62-102 50-85 (376)
145 2j9r_A Thymidine kinase; TK1, 84.2 1.2 3.9E-05 40.5 5.1 34 63-99 31-64 (214)
146 1zuh_A Shikimate kinase; alpha 84.1 0.64 2.2E-05 38.9 3.2 24 62-87 8-31 (168)
147 2bjv_A PSP operon transcriptio 84.0 0.84 2.9E-05 41.3 4.2 36 60-98 29-64 (265)
148 2wtz_A UDP-N-acetylmuramoyl-L- 84.0 0.92 3.1E-05 46.2 4.9 36 60-99 145-180 (535)
149 3trf_A Shikimate kinase, SK; a 83.8 0.66 2.3E-05 39.4 3.2 23 62-87 7-29 (185)
150 1jwy_B Dynamin A GTPase domain 83.8 1.4 4.7E-05 40.8 5.6 42 38-85 4-46 (315)
151 3asz_A Uridine kinase; cytidin 83.7 1 3.4E-05 39.1 4.4 31 63-99 9-39 (211)
152 2rhm_A Putative kinase; P-loop 83.3 0.74 2.5E-05 39.1 3.3 23 62-87 7-29 (193)
153 2qt1_A Nicotinamide riboside k 83.3 0.53 1.8E-05 41.0 2.4 48 46-100 7-54 (207)
154 3eag_A UDP-N-acetylmuramate:L- 83.3 1 3.6E-05 42.7 4.6 33 61-97 108-140 (326)
155 2zr9_A Protein RECA, recombina 83.1 1.2 4.1E-05 43.0 5.0 46 63-114 64-109 (349)
156 1w36_D RECD, exodeoxyribonucle 83.0 1 3.4E-05 46.7 4.8 36 62-100 166-205 (608)
157 1kag_A SKI, shikimate kinase I 83.0 0.68 2.3E-05 38.7 2.9 23 62-87 6-28 (173)
158 2qby_A CDC6 homolog 1, cell di 83.0 1.1 3.9E-05 41.9 4.7 36 60-98 45-83 (386)
159 3fb4_A Adenylate kinase; psych 82.7 0.76 2.6E-05 40.1 3.2 22 63-87 3-24 (216)
160 1p6x_A Thymidine kinase; P-loo 82.6 0.63 2.2E-05 45.0 2.9 37 62-102 8-44 (334)
161 2c95_A Adenylate kinase 1; tra 82.5 0.83 2.8E-05 38.9 3.3 23 62-87 11-33 (196)
162 4a0g_A Adenosylmethionine-8-am 82.3 1.8 6.2E-05 46.6 6.6 42 61-103 34-83 (831)
163 1e6c_A Shikimate kinase; phosp 82.2 0.84 2.9E-05 38.1 3.2 22 63-87 5-26 (173)
164 2pt5_A Shikimate kinase, SK; a 82.2 0.87 3E-05 37.9 3.2 22 63-87 3-24 (168)
165 3con_A GTPase NRAS; structural 81.9 0.79 2.7E-05 38.6 2.9 22 61-85 22-43 (190)
166 1ofh_A ATP-dependent HSL prote 81.9 1.6 5.5E-05 39.8 5.2 34 59-98 49-82 (310)
167 3cm0_A Adenylate kinase; ATP-b 81.8 0.89 3.1E-05 38.5 3.2 23 62-87 6-28 (186)
168 1wb1_A Translation elongation 81.7 1.5 5E-05 44.2 5.3 52 155-213 97-151 (482)
169 1p3d_A UDP-N-acetylmuramate--a 81.7 1.1 3.7E-05 44.8 4.3 36 61-100 118-153 (475)
170 1qhx_A CPT, protein (chloramph 81.5 0.82 2.8E-05 38.4 2.9 24 63-88 5-28 (178)
171 1xp8_A RECA protein, recombina 81.4 1.5 5.1E-05 42.7 5.0 37 63-102 77-113 (366)
172 2ocp_A DGK, deoxyguanosine kin 81.3 0.7 2.4E-05 41.4 2.5 23 63-88 5-27 (241)
173 3lk7_A UDP-N-acetylmuramoylala 81.2 1.7 5.7E-05 43.2 5.4 35 61-99 112-146 (451)
174 2z4s_A Chromosomal replication 81.2 1.2 4E-05 44.3 4.3 36 60-98 130-167 (440)
175 2bwj_A Adenylate kinase 5; pho 81.2 0.99 3.4E-05 38.5 3.3 23 62-87 14-36 (199)
176 1cr0_A DNA primase/helicase; R 81.2 1.6 5.6E-05 40.2 5.0 36 63-101 38-74 (296)
177 3iij_A Coilin-interacting nucl 81.2 1.3 4.6E-05 37.4 4.1 23 62-87 13-35 (180)
178 2if2_A Dephospho-COA kinase; a 80.9 1 3.4E-05 38.9 3.3 20 63-85 4-23 (204)
179 3dl0_A Adenylate kinase; phosp 80.8 0.83 2.8E-05 39.9 2.7 22 63-87 3-24 (216)
180 2vli_A Antibiotic resistance p 80.4 0.84 2.9E-05 38.4 2.5 22 63-87 8-29 (183)
181 2f00_A UDP-N-acetylmuramate--L 80.4 1.3 4.4E-05 44.5 4.3 35 61-99 119-153 (491)
182 2cvh_A DNA repair and recombin 80.1 1.3 4.4E-05 38.3 3.7 34 62-101 22-55 (220)
183 2v1u_A Cell division control p 79.9 1.4 4.6E-05 41.4 4.1 28 60-90 44-71 (387)
184 1y63_A LMAJ004144AAA protein; 79.8 1.1 3.9E-05 38.3 3.2 23 62-87 12-34 (184)
185 2axn_A 6-phosphofructo-2-kinas 79.7 1.7 5.9E-05 44.2 5.1 36 63-100 37-72 (520)
186 2ze6_A Isopentenyl transferase 79.5 1.1 3.7E-05 40.9 3.2 23 63-87 3-25 (253)
187 1aky_A Adenylate kinase; ATP:A 79.3 1.3 4.5E-05 38.8 3.6 24 61-87 5-28 (220)
188 4a1f_A DNAB helicase, replicat 79.1 1.8 6.2E-05 41.7 4.7 38 63-102 48-85 (338)
189 2aka_B Dynamin-1; fusion prote 79.0 2.7 9.1E-05 38.3 5.7 44 38-85 5-48 (299)
190 2qz4_A Paraplegin; AAA+, SPG7, 79.0 1.4 4.8E-05 39.3 3.7 27 58-87 37-63 (262)
191 2iyv_A Shikimate kinase, SK; t 78.9 0.98 3.4E-05 38.3 2.5 22 63-87 5-26 (184)
192 3lfu_A DNA helicase II; SF1 he 78.8 1.7 5.8E-05 44.5 4.7 37 60-99 22-62 (647)
193 3vaa_A Shikimate kinase, SK; s 78.7 1.3 4.4E-05 38.4 3.2 23 62-87 27-49 (199)
194 1lv7_A FTSH; alpha/beta domain 78.7 1.5 5E-05 39.4 3.7 27 58-87 43-69 (257)
195 2grj_A Dephospho-COA kinase; T 78.6 1.3 4.3E-05 39.0 3.2 23 62-87 14-36 (192)
196 1knq_A Gluconate kinase; ALFA/ 78.3 1.4 4.7E-05 37.0 3.3 23 62-87 10-32 (175)
197 3bh0_A DNAB-like replicative h 78.3 2.1 7.2E-05 40.3 4.8 37 63-101 70-106 (315)
198 1cke_A CK, MSSA, protein (cyti 78.2 1.3 4.5E-05 38.7 3.2 23 62-87 7-29 (227)
199 2qor_A Guanylate kinase; phosp 78.2 1.1 3.8E-05 39.0 2.7 38 60-100 12-50 (204)
200 3aez_A Pantothenate kinase; tr 77.9 2.2 7.7E-05 40.4 4.9 37 62-100 91-129 (312)
201 1ukz_A Uridylate kinase; trans 77.8 1.2 4.1E-05 38.4 2.7 22 63-87 18-39 (203)
202 2zts_A Putative uncharacterize 77.7 2 7E-05 37.7 4.3 37 63-102 33-70 (251)
203 3bgw_A DNAB-like replicative h 77.6 1.8 6.2E-05 43.1 4.4 38 63-102 199-236 (444)
204 3s2u_A UDP-N-acetylglucosamine 77.5 3 0.0001 39.8 5.7 37 62-102 4-41 (365)
205 2gk6_A Regulator of nonsense t 77.3 2.1 7.2E-05 44.3 4.9 39 62-103 197-236 (624)
206 3hn7_A UDP-N-acetylmuramate-L- 77.3 1.9 6.6E-05 43.8 4.5 34 61-98 122-155 (524)
207 1sxj_B Activator 1 37 kDa subu 77.2 2 6.7E-05 39.3 4.2 32 57-92 40-71 (323)
208 3tlx_A Adenylate kinase 2; str 76.8 1.5 5.1E-05 39.6 3.2 25 60-87 29-53 (243)
209 1d2n_A N-ethylmaleimide-sensit 76.5 3.9 0.00013 37.0 6.0 34 58-97 62-95 (272)
210 1via_A Shikimate kinase; struc 76.3 1.7 5.7E-05 36.6 3.2 22 63-87 7-28 (175)
211 1ex7_A Guanylate kinase; subst 76.2 1.4 4.8E-05 38.8 2.8 38 61-101 2-40 (186)
212 1htw_A HI0065; nucleotide-bind 76.2 1.5 5E-05 37.4 2.8 24 62-88 35-58 (158)
213 1z2a_A RAS-related protein RAB 76.0 1.6 5.5E-05 35.4 2.9 22 60-84 5-26 (168)
214 1zak_A Adenylate kinase; ATP:A 76.0 1.8 6.2E-05 38.0 3.5 25 61-88 6-30 (222)
215 3avx_A Elongation factor TS, e 75.9 4.7 0.00016 45.4 7.4 29 60-91 296-324 (1289)
216 1fnn_A CDC6P, cell division co 75.6 2.8 9.7E-05 39.4 4.9 34 62-98 46-80 (389)
217 1uf9_A TT1252 protein; P-loop, 75.6 1.6 5.6E-05 37.2 3.0 21 63-86 11-31 (203)
218 1nlf_A Regulatory protein REPA 75.6 3 0.0001 38.1 5.0 25 62-89 32-56 (279)
219 1ly1_A Polynucleotide kinase; 75.6 1.6 5.5E-05 36.3 2.9 21 63-85 4-24 (181)
220 3a00_A Guanylate kinase, GMP k 75.5 1.9 6.4E-05 36.9 3.4 35 62-99 3-38 (186)
221 2gks_A Bifunctional SAT/APS ki 75.4 2.5 8.6E-05 43.3 4.8 34 62-98 374-407 (546)
222 3pzx_A Formate--tetrahydrofola 75.3 3.7 0.00013 41.9 5.8 109 184-302 290-403 (557)
223 2dyk_A GTP-binding protein; GT 75.2 1.7 5.9E-05 35.1 2.9 20 62-84 3-22 (161)
224 4eun_A Thermoresistant glucoki 75.2 1.8 6.2E-05 37.4 3.2 23 62-87 31-53 (200)
225 4hv4_A UDP-N-acetylmuramate--L 75.2 2.2 7.6E-05 42.9 4.3 33 62-98 123-155 (494)
226 1sq5_A Pantothenate kinase; P- 75.1 2.7 9.1E-05 39.4 4.5 37 63-102 82-122 (308)
227 1ak2_A Adenylate kinase isoenz 74.9 1.9 6.7E-05 38.3 3.4 23 62-87 18-40 (233)
228 1e4v_A Adenylate kinase; trans 74.7 1.8 6.3E-05 37.8 3.2 22 63-87 3-24 (214)
229 1ojl_A Transcriptional regulat 74.7 2 6.9E-05 40.2 3.6 36 59-97 24-59 (304)
230 3ake_A Cytidylate kinase; CMP 74.6 2 6.8E-05 36.8 3.3 24 62-87 3-26 (208)
231 1zd8_A GTP:AMP phosphotransfer 74.6 1.7 5.8E-05 38.4 2.9 23 62-87 9-31 (227)
232 3d3q_A TRNA delta(2)-isopenten 74.3 2.2 7.4E-05 41.3 3.8 30 62-98 8-37 (340)
233 2a5y_B CED-4; apoptosis; HET: 74.3 1.7 5.7E-05 44.1 3.1 23 61-85 152-174 (549)
234 2xb4_A Adenylate kinase; ATP-b 74.1 2 6.8E-05 38.1 3.2 22 63-87 3-24 (223)
235 1x6v_B Bifunctional 3'-phospho 74.0 2.9 9.9E-05 43.8 4.9 33 63-97 54-86 (630)
236 4ag6_A VIRB4 ATPase, type IV s 73.4 3.1 0.00011 40.0 4.7 48 62-116 37-84 (392)
237 1p5z_B DCK, deoxycytidine kina 73.3 0.67 2.3E-05 42.2 -0.1 24 62-88 26-49 (263)
238 3ice_A Transcription terminati 73.1 5.5 0.00019 39.6 6.4 50 62-115 176-227 (422)
239 2atv_A RERG, RAS-like estrogen 72.7 2.1 7.1E-05 36.4 2.9 23 60-85 28-50 (196)
240 2r2a_A Uncharacterized protein 72.7 2.9 9.9E-05 37.0 3.9 37 60-99 5-46 (199)
241 1um8_A ATP-dependent CLP prote 72.6 3.6 0.00012 39.2 4.9 34 59-98 71-104 (376)
242 3h4m_A Proteasome-activating n 72.5 2.3 8E-05 38.5 3.4 26 59-87 50-75 (285)
243 2r6a_A DNAB helicase, replicat 72.4 3.7 0.00013 40.6 5.1 30 72-101 212-242 (454)
244 3e2i_A Thymidine kinase; Zn-bi 72.4 4.2 0.00014 36.9 5.0 34 64-100 32-65 (219)
245 1bif_A 6-phosphofructo-2-kinas 72.3 3.5 0.00012 41.0 4.9 36 60-98 39-74 (469)
246 2fh5_B SR-beta, signal recogni 72.1 2.2 7.6E-05 36.6 3.0 23 60-85 7-29 (214)
247 1w5s_A Origin recognition comp 72.0 1.8 6.2E-05 41.1 2.6 20 71-90 60-79 (412)
248 3be4_A Adenylate kinase; malar 71.9 2.3 8E-05 37.3 3.1 23 62-87 7-29 (217)
249 3tr0_A Guanylate kinase, GMP k 71.8 2.1 7.2E-05 36.6 2.8 23 62-87 9-31 (205)
250 1jjv_A Dephospho-COA kinase; P 71.3 1.9 6.6E-05 37.2 2.4 20 63-85 5-24 (206)
251 2ged_A SR-beta, signal recogni 71.2 2.4 8.1E-05 35.7 2.9 23 60-85 48-70 (193)
252 2j41_A Guanylate kinase; GMP, 71.1 2 6.7E-05 36.8 2.4 23 62-87 8-30 (207)
253 1g41_A Heat shock protein HSLU 71.0 12 0.00041 37.4 8.4 46 60-111 50-101 (444)
254 3clv_A RAB5 protein, putative; 70.9 2.6 9E-05 35.1 3.1 24 60-86 7-30 (208)
255 2wjy_A Regulator of nonsense t 70.6 3.7 0.00013 44.1 4.9 38 63-103 374-412 (800)
256 1q57_A DNA primase/helicase; d 70.2 2.3 7.9E-05 42.6 3.0 38 63-102 244-282 (503)
257 2r62_A Cell division protease 70.2 1.6 5.4E-05 39.4 1.6 28 58-88 42-69 (268)
258 3bwd_D RAC-like GTP-binding pr 69.8 3.1 0.00011 34.3 3.3 22 60-84 8-29 (182)
259 1gvn_B Zeta; postsegregational 69.6 3.1 0.0001 38.7 3.5 25 60-87 33-57 (287)
260 2cxx_A Probable GTP-binding pr 69.5 2.5 8.5E-05 35.2 2.6 20 62-84 3-22 (190)
261 1u8z_A RAS-related protein RAL 69.4 2.8 9.5E-05 33.8 2.9 21 61-84 5-25 (168)
262 1w4r_A Thymidine kinase; type 69.3 5.6 0.00019 35.4 5.0 35 63-100 23-57 (195)
263 1e9r_A Conjugal transfer prote 69.2 4.2 0.00014 39.6 4.6 34 62-98 55-88 (437)
264 2q6t_A DNAB replication FORK h 69.1 4.6 0.00016 39.8 4.9 30 72-101 209-239 (444)
265 2ehv_A Hypothetical protein PH 69.1 4.7 0.00016 35.3 4.5 34 63-99 33-67 (251)
266 2zej_A Dardarin, leucine-rich 68.7 2.3 8E-05 35.8 2.3 22 61-85 3-24 (184)
267 2jeo_A Uridine-cytidine kinase 68.6 3.1 0.0001 37.3 3.2 34 64-100 29-67 (245)
268 2i3b_A HCR-ntpase, human cance 68.6 3.8 0.00013 35.8 3.7 26 63-91 4-29 (189)
269 3eph_A TRNA isopentenyltransfe 68.5 2.8 9.6E-05 41.6 3.1 32 61-99 2-33 (409)
270 2hxs_A RAB-26, RAS-related pro 68.4 2.7 9.1E-05 34.6 2.6 23 60-85 6-28 (178)
271 2fn4_A P23, RAS-related protei 68.4 2.9 9.9E-05 34.3 2.8 22 61-85 10-31 (181)
272 1gm5_A RECG; helicase, replica 68.3 29 0.00099 37.0 11.2 128 62-198 391-526 (780)
273 1kao_A RAP2A; GTP-binding prot 68.2 3.1 0.0001 33.5 2.9 22 61-85 4-25 (167)
274 1r8s_A ADP-ribosylation factor 68.2 3.2 0.00011 33.6 3.0 21 62-85 2-22 (164)
275 3cf0_A Transitional endoplasmi 68.1 3.3 0.00011 38.5 3.4 26 59-87 48-73 (301)
276 2efe_B Small GTP-binding prote 68.1 3.1 0.00011 34.3 3.0 22 60-84 12-33 (181)
277 2z43_A DNA repair and recombin 68.1 3.9 0.00013 38.5 4.0 36 63-101 110-151 (324)
278 1m7b_A RND3/RHOE small GTP-bin 67.9 3 0.0001 34.9 2.9 23 60-85 7-29 (184)
279 1hqc_A RUVB; extended AAA-ATPa 67.6 3.5 0.00012 37.9 3.5 26 59-87 37-62 (324)
280 3c5c_A RAS-like protein 12; GD 67.6 3.1 0.00011 35.1 2.9 23 60-85 21-43 (187)
281 2xzl_A ATP-dependent helicase 67.5 4 0.00014 43.8 4.3 42 62-106 377-419 (802)
282 1sxj_C Activator 1 40 kDa subu 67.5 5 0.00017 37.7 4.6 37 57-97 44-80 (340)
283 3ihw_A Centg3; RAS, centaurin, 67.3 3.2 0.00011 35.1 3.0 22 61-85 21-42 (184)
284 1vht_A Dephospho-COA kinase; s 67.3 3 0.0001 36.4 2.8 20 63-85 7-26 (218)
285 2wji_A Ferrous iron transport 67.2 3.1 0.00011 34.3 2.8 21 61-84 4-24 (165)
286 2erx_A GTP-binding protein DI- 67.2 3.1 0.0001 33.7 2.7 22 61-85 4-25 (172)
287 1lvg_A Guanylate kinase, GMP k 67.2 3.8 0.00013 35.6 3.4 25 61-88 5-29 (198)
288 3hws_A ATP-dependent CLP prote 67.1 9.5 0.00033 36.1 6.5 34 59-98 50-83 (363)
289 2iwr_A Centaurin gamma 1; ANK 67.0 2.4 8.3E-05 35.0 2.1 22 61-85 8-29 (178)
290 2h92_A Cytidylate kinase; ross 66.9 3.6 0.00012 35.7 3.2 23 62-87 5-27 (219)
291 3d8b_A Fidgetin-like protein 1 66.9 5.4 0.00018 38.0 4.7 35 58-98 115-149 (357)
292 3b9p_A CG5977-PA, isoform A; A 66.8 3.7 0.00013 37.4 3.4 26 59-87 53-78 (297)
293 1c1y_A RAS-related protein RAP 66.6 3.4 0.00012 33.3 2.9 22 61-85 4-25 (167)
294 1kgd_A CASK, peripheral plasma 66.5 3.4 0.00012 35.2 2.9 24 62-88 7-30 (180)
295 3tau_A Guanylate kinase, GMP k 66.4 2.4 8.3E-05 37.1 2.0 24 62-88 10-33 (208)
296 2p5t_B PEZT; postsegregational 66.4 3.2 0.00011 37.5 2.9 24 62-88 34-57 (253)
297 1ek0_A Protein (GTP-binding pr 66.3 3.5 0.00012 33.3 2.9 21 61-84 4-24 (170)
298 3t1o_A Gliding protein MGLA; G 66.3 3.5 0.00012 34.3 2.9 23 60-85 14-36 (198)
299 2gf0_A GTP-binding protein DI- 66.2 3.7 0.00013 34.4 3.1 23 60-85 8-30 (199)
300 2y8e_A RAB-protein 6, GH09086P 66.2 3.4 0.00012 33.8 2.8 21 61-84 15-35 (179)
301 2qp9_X Vacuolar protein sortin 66.2 6.5 0.00022 37.5 5.2 34 58-97 82-115 (355)
302 4e22_A Cytidylate kinase; P-lo 66.2 3.6 0.00012 37.2 3.2 24 62-87 28-51 (252)
303 1z08_A RAS-related protein RAB 66.0 3.6 0.00012 33.4 2.9 23 60-85 6-28 (170)
304 1m8p_A Sulfate adenylyltransfe 65.9 4.7 0.00016 41.5 4.4 34 62-97 397-431 (573)
305 4dkx_A RAS-related protein RAB 65.8 3.5 0.00012 36.7 2.9 20 62-84 15-34 (216)
306 1ixz_A ATP-dependent metallopr 65.6 4.4 0.00015 36.2 3.6 27 59-88 48-74 (254)
307 1gg4_A UDP-N-acetylmuramoylala 65.6 5.3 0.00018 39.5 4.5 31 60-95 99-129 (452)
308 2wjg_A FEOB, ferrous iron tran 65.5 3.5 0.00012 34.4 2.8 21 61-84 8-28 (188)
309 1fzq_A ADP-ribosylation factor 65.4 4.2 0.00014 34.1 3.3 22 60-84 16-37 (181)
310 1q3t_A Cytidylate kinase; nucl 65.4 4.7 0.00016 35.8 3.7 23 62-87 18-40 (236)
311 1z0f_A RAB14, member RAS oncog 65.4 3.7 0.00013 33.6 2.9 22 61-85 16-37 (179)
312 2f9l_A RAB11B, member RAS onco 65.0 3.8 0.00013 34.9 2.9 22 61-85 6-27 (199)
313 2a9k_A RAS-related protein RAL 64.9 3.8 0.00013 33.7 2.9 21 61-84 19-39 (187)
314 3q72_A GTP-binding protein RAD 64.8 3.4 0.00012 33.5 2.5 20 61-83 3-22 (166)
315 1iy2_A ATP-dependent metallopr 64.7 4.5 0.00015 36.8 3.6 28 58-88 71-98 (278)
316 3pqc_A Probable GTP-binding pr 64.6 3.5 0.00012 34.3 2.6 21 61-84 24-44 (195)
317 1g16_A RAS-related protein SEC 64.5 3.9 0.00013 33.1 2.8 22 61-85 4-25 (170)
318 2chq_A Replication factor C sm 64.5 6.9 0.00024 35.5 4.8 32 56-91 35-66 (319)
319 1xwi_A SKD1 protein; VPS4B, AA 64.5 6.7 0.00023 36.8 4.8 26 59-87 44-69 (322)
320 1r2q_A RAS-related protein RAB 64.4 4 0.00014 32.9 2.9 22 61-85 7-28 (170)
321 1jr3_A DNA polymerase III subu 64.3 7 0.00024 36.5 4.9 29 58-89 36-64 (373)
322 1oix_A RAS-related protein RAB 64.3 3.9 0.00013 34.8 2.9 23 61-86 30-52 (191)
323 1ky3_A GTP-binding protein YPT 64.3 3.3 0.00011 34.0 2.4 22 60-84 8-29 (182)
324 1m2o_B GTP-binding protein SAR 64.3 4 0.00014 34.6 3.0 22 61-85 24-45 (190)
325 1svi_A GTP-binding protein YSX 64.2 3.6 0.00012 34.5 2.6 21 61-84 24-44 (195)
326 1wms_A RAB-9, RAB9, RAS-relate 64.2 4 0.00014 33.4 2.9 21 61-84 8-28 (177)
327 1nrj_B SR-beta, signal recogni 64.1 4.6 0.00016 34.7 3.4 24 60-86 12-35 (218)
328 1z0j_A RAB-22, RAS-related pro 64.0 4.1 0.00014 33.0 2.9 21 61-84 7-27 (170)
329 2cjw_A GTP-binding protein GEM 63.9 4 0.00014 34.8 2.9 22 61-85 7-28 (192)
330 3o4f_A Spermidine synthase; am 63.8 18 0.00062 34.1 7.6 72 141-217 141-220 (294)
331 3crm_A TRNA delta(2)-isopenten 63.7 3.6 0.00012 39.5 2.8 22 63-87 8-29 (323)
332 3l0o_A Transcription terminati 63.6 5.3 0.00018 39.8 4.0 51 62-116 177-229 (427)
333 3eie_A Vacuolar protein sortin 63.6 6 0.00021 36.9 4.3 27 58-87 49-75 (322)
334 1sxj_E Activator 1 40 kDa subu 63.6 5 0.00017 37.4 3.8 30 55-88 32-61 (354)
335 2f6r_A COA synthase, bifunctio 63.6 3.8 0.00013 37.8 2.9 20 63-85 78-97 (281)
336 3cbq_A GTP-binding protein REM 63.5 2.6 8.8E-05 36.2 1.6 21 60-83 23-43 (195)
337 3tmk_A Thymidylate kinase; pho 63.5 10 0.00036 33.8 5.7 34 61-101 6-39 (216)
338 1gwn_A RHO-related GTP-binding 63.4 4.1 0.00014 35.3 2.9 23 60-85 28-50 (205)
339 3llu_A RAS-related GTP-binding 63.4 4.2 0.00014 34.5 2.9 21 60-83 20-40 (196)
340 3lnc_A Guanylate kinase, GMP k 63.3 3 0.0001 36.8 2.0 23 62-87 29-52 (231)
341 1ye8_A Protein THEP1, hypothet 63.2 4.7 0.00016 34.7 3.2 23 63-88 3-25 (178)
342 2nzj_A GTP-binding protein REM 63.1 4 0.00014 33.3 2.7 21 61-84 5-25 (175)
343 2am1_A SP protein, UDP-N-acety 63.1 5.6 0.00019 39.3 4.1 35 60-100 99-133 (454)
344 3czq_A Putative polyphosphate 63.1 6 0.00021 37.7 4.2 51 38-97 70-120 (304)
345 3uk6_A RUVB-like 2; hexameric 63.1 4.6 0.00016 37.9 3.4 27 60-89 70-96 (368)
346 1g8f_A Sulfate adenylyltransfe 63.0 6.2 0.00021 40.2 4.5 28 62-91 396-424 (511)
347 2bov_A RAla, RAS-related prote 63.0 4.3 0.00015 34.3 2.9 21 61-84 15-35 (206)
348 2q3h_A RAS homolog gene family 62.9 4.1 0.00014 34.5 2.8 22 60-84 20-41 (201)
349 1vg8_A RAS-related protein RAB 62.9 3.6 0.00012 34.9 2.4 23 60-85 8-30 (207)
350 3pfi_A Holliday junction ATP-d 62.7 5 0.00017 37.3 3.5 34 59-98 54-87 (338)
351 3a8t_A Adenylate isopentenyltr 62.4 2.7 9.4E-05 40.6 1.7 24 62-87 41-64 (339)
352 3bc1_A RAS-related protein RAB 62.3 3.7 0.00013 34.0 2.3 23 60-85 11-33 (195)
353 4dsu_A GTPase KRAS, isoform 2B 62.3 4.5 0.00015 33.4 2.9 21 61-84 5-25 (189)
354 1v5w_A DMC1, meiotic recombina 62.2 6.1 0.00021 37.6 4.1 36 63-101 125-166 (343)
355 1g8p_A Magnesium-chelatase 38 62.1 3.5 0.00012 38.3 2.3 25 61-88 46-70 (350)
356 2j0v_A RAC-like GTP-binding pr 62.0 4.5 0.00015 34.6 2.9 21 61-84 10-30 (212)
357 2lkc_A Translation initiation 61.9 6 0.0002 32.4 3.5 22 60-84 8-29 (178)
358 1upt_A ARL1, ADP-ribosylation 61.9 5.3 0.00018 32.4 3.2 22 60-84 7-28 (171)
359 2vp4_A Deoxynucleoside kinase; 61.8 3.3 0.00011 36.8 2.0 29 62-97 22-50 (230)
360 2oil_A CATX-8, RAS-related pro 61.7 4.7 0.00016 33.9 2.9 23 60-85 25-47 (193)
361 1zp6_A Hypothetical protein AT 61.7 3.9 0.00013 34.5 2.4 22 62-86 11-32 (191)
362 1n0w_A DNA repair protein RAD5 61.6 6.7 0.00023 34.2 4.0 35 62-99 26-66 (243)
363 2g6b_A RAS-related protein RAB 61.4 4.8 0.00017 33.0 2.9 23 60-85 10-32 (180)
364 2bme_A RAB4A, RAS-related prot 61.3 4.7 0.00016 33.4 2.8 22 60-84 10-31 (186)
365 2fg5_A RAB-22B, RAS-related pr 61.3 4.4 0.00015 34.2 2.7 35 48-85 9-45 (192)
366 1mh1_A RAC1; GTP-binding, GTPa 61.2 4.9 0.00017 33.1 2.9 21 61-84 6-26 (186)
367 3nwj_A ATSK2; P loop, shikimat 61.0 5.2 0.00018 36.6 3.3 23 62-87 50-72 (250)
368 2j1l_A RHO-related GTP-binding 60.9 4.5 0.00015 35.0 2.7 22 60-84 34-55 (214)
369 3kkq_A RAS-related protein M-R 60.7 5 0.00017 33.2 2.9 21 61-84 19-39 (183)
370 1sxj_D Activator 1 41 kDa subu 60.7 7.1 0.00024 36.2 4.2 23 63-88 61-83 (353)
371 1z6t_A APAF-1, apoptotic prote 60.6 4.4 0.00015 40.8 3.0 25 61-87 147-171 (591)
372 3q3j_B RHO-related GTP-binding 60.5 5 0.00017 34.8 2.9 23 60-85 27-49 (214)
373 3jvv_A Twitching mobility prot 60.3 6.8 0.00023 37.8 4.1 33 62-97 125-158 (356)
374 3exa_A TRNA delta(2)-isopenten 60.1 4.1 0.00014 39.2 2.4 32 62-100 4-35 (322)
375 3tkl_A RAS-related protein RAB 60.1 5.2 0.00018 33.4 2.9 22 60-84 16-37 (196)
376 3co5_A Putative two-component 60.1 3.3 0.00011 33.9 1.6 25 60-87 27-51 (143)
377 2bdt_A BH3686; alpha-beta prot 60.0 5.2 0.00018 33.9 2.9 21 63-86 5-25 (189)
378 3fdi_A Uncharacterized protein 59.9 4.8 0.00017 35.3 2.7 25 61-87 6-30 (201)
379 3ney_A 55 kDa erythrocyte memb 59.8 5.3 0.00018 35.4 2.9 38 61-101 20-58 (197)
380 2g0t_A Conserved hypothetical 59.7 11 0.00036 36.6 5.3 39 58-98 166-205 (350)
381 2hup_A RAS-related protein RAB 59.7 5.2 0.00018 34.2 2.9 21 61-84 30-50 (201)
382 1zd9_A ADP-ribosylation factor 59.6 5.3 0.00018 33.5 2.9 22 61-85 23-44 (188)
383 2gf9_A RAS-related protein RAB 59.6 5.4 0.00018 33.4 2.9 21 61-84 23-43 (189)
384 3tw8_B RAS-related protein RAB 59.6 4.9 0.00017 32.9 2.6 21 61-84 10-30 (181)
385 2gco_A H9, RHO-related GTP-bin 59.5 5.3 0.00018 34.0 2.9 22 61-85 26-47 (201)
386 1z06_A RAS-related protein RAB 59.5 5.3 0.00018 33.4 2.9 22 61-85 21-42 (189)
387 3q85_A GTP-binding protein REM 59.5 5.2 0.00018 32.4 2.7 20 62-84 4-23 (169)
388 3r20_A Cytidylate kinase; stru 59.2 5.8 0.0002 36.1 3.2 23 63-87 11-33 (233)
389 3io5_A Recombination and repai 59.2 5.1 0.00018 38.6 2.9 46 63-114 31-78 (333)
390 3foz_A TRNA delta(2)-isopenten 59.1 4.9 0.00017 38.5 2.8 31 62-99 11-41 (316)
391 2g3y_A GTP-binding protein GEM 59.0 5.1 0.00018 35.3 2.7 21 61-84 38-58 (211)
392 2xtp_A GTPase IMAP family memb 58.9 5 0.00017 35.9 2.7 22 60-84 22-43 (260)
393 2gj8_A MNME, tRNA modification 58.7 5.1 0.00017 33.4 2.6 22 61-85 5-26 (172)
394 2bcg_Y Protein YP2, GTP-bindin 58.7 5.5 0.00019 33.8 2.8 23 60-85 8-30 (206)
395 1s1m_A CTP synthase; CTP synth 58.6 9.3 0.00032 39.3 4.9 38 62-100 5-42 (545)
396 1zj6_A ADP-ribosylation factor 58.5 5.3 0.00018 33.4 2.7 22 60-84 16-37 (187)
397 2a5j_A RAS-related protein RAB 58.4 5.7 0.0002 33.4 2.9 22 61-85 22-43 (191)
398 3reg_A RHO-like small GTPase; 58.4 5.7 0.0002 33.4 2.9 23 60-85 23-45 (194)
399 3u61_B DNA polymerase accessor 58.4 8.8 0.0003 35.4 4.4 32 62-98 49-80 (324)
400 3enk_A UDP-glucose 4-epimerase 58.4 45 0.0015 30.4 9.3 75 72-148 12-88 (341)
401 3dz8_A RAS-related protein RAB 58.4 5.7 0.00019 33.4 2.8 24 59-85 22-45 (191)
402 1zcb_A G alpha I/13; GTP-bindi 58.3 6.7 0.00023 37.9 3.7 26 60-89 33-58 (362)
403 1in4_A RUVB, holliday junction 58.3 7.2 0.00024 36.7 3.8 25 61-88 52-76 (334)
404 2qu8_A Putative nucleolar GTP- 58.3 4.5 0.00015 35.4 2.2 21 61-84 30-50 (228)
405 3pxi_A Negative regulator of g 58.3 22 0.00074 37.4 7.9 33 62-97 523-555 (758)
406 1ltq_A Polynucleotide kinase; 58.1 5.3 0.00018 36.5 2.8 22 63-87 5-26 (301)
407 3oig_A Enoyl-[acyl-carrier-pro 58.1 22 0.00077 31.5 7.0 79 72-150 14-99 (266)
408 2eyu_A Twitching motility prot 57.9 8.3 0.00028 35.3 4.1 25 62-89 27-51 (261)
409 1sxj_A Activator 1 95 kDa subu 57.9 8.3 0.00029 38.7 4.4 33 60-98 77-109 (516)
410 2bbw_A Adenylate kinase 4, AK4 57.9 7.3 0.00025 34.7 3.6 23 62-87 29-51 (246)
411 3t5g_A GTP-binding protein RHE 57.8 5.6 0.00019 32.8 2.7 21 61-84 7-27 (181)
412 2ewv_A Twitching motility prot 57.6 7.8 0.00027 37.4 4.0 33 62-97 138-171 (372)
413 4i1u_A Dephospho-COA kinase; s 57.6 5.9 0.0002 35.5 2.9 21 62-85 11-31 (210)
414 1tue_A Replication protein E1; 57.6 5.8 0.0002 35.9 2.8 23 63-88 61-83 (212)
415 2ce7_A Cell division protein F 57.5 6.9 0.00024 39.4 3.7 36 57-98 46-81 (476)
416 2r44_A Uncharacterized protein 57.5 3.7 0.00013 38.2 1.6 24 61-87 47-70 (331)
417 3ruf_A WBGU; rossmann fold, UD 57.5 39 0.0013 31.0 8.8 30 72-103 32-61 (351)
418 2p5s_A RAS and EF-hand domain 57.3 6.1 0.00021 33.5 2.9 23 60-85 28-50 (199)
419 3k53_A Ferrous iron transport 57.0 5.4 0.00018 36.2 2.6 20 62-84 5-24 (271)
420 2fv8_A H6, RHO-related GTP-bin 56.9 6.1 0.00021 33.8 2.8 22 61-85 26-47 (207)
421 3lyu_A Putative hydrogenase; t 56.8 7.4 0.00025 32.2 3.2 36 60-102 18-53 (142)
422 3oes_A GTPase rhebl1; small GT 56.7 6.2 0.00021 33.5 2.8 22 61-85 25-46 (201)
423 1zbd_A Rabphilin-3A; G protein 56.5 6 0.00021 33.4 2.7 21 61-84 9-29 (203)
424 1qvr_A CLPB protein; coiled co 56.5 15 0.00051 39.3 6.4 40 55-97 583-622 (854)
425 2h17_A ADP-ribosylation factor 56.5 5.4 0.00018 33.2 2.3 22 61-85 22-43 (181)
426 1x3s_A RAS-related protein RAB 56.4 6.5 0.00022 32.7 2.9 21 61-84 16-36 (195)
427 2b6h_A ADP-ribosylation factor 56.2 5.8 0.0002 33.6 2.5 22 60-84 29-50 (192)
428 1f6b_A SAR1; gtpases, N-termin 56.1 5.2 0.00018 34.2 2.2 21 61-84 26-46 (198)
429 3i6i_A Putative leucoanthocyan 56.0 35 0.0012 31.5 8.2 74 72-148 17-93 (346)
430 1p9r_A General secretion pathw 55.6 8.7 0.0003 37.9 4.0 33 62-97 169-201 (418)
431 2atx_A Small GTP binding prote 55.6 6.7 0.00023 32.9 2.8 22 61-85 19-40 (194)
432 1iqp_A RFCS; clamp loader, ext 55.4 7.2 0.00025 35.5 3.2 26 62-90 48-73 (327)
433 1tf7_A KAIC; homohexamer, hexa 55.4 11 0.00038 37.9 4.8 33 63-98 284-316 (525)
434 2ew1_A RAS-related protein RAB 55.3 6.7 0.00023 33.8 2.8 22 61-85 27-48 (201)
435 4bas_A ADP-ribosylation factor 55.2 6.3 0.00021 33.0 2.6 21 61-84 18-38 (199)
436 1vco_A CTP synthetase; tetrame 54.9 12 0.0004 38.6 4.9 38 62-100 14-51 (550)
437 3cph_A RAS-related protein SEC 54.8 7.1 0.00024 33.1 2.9 22 60-84 20-41 (213)
438 3k31_A Enoyl-(acyl-carrier-pro 54.3 34 0.0012 31.2 7.7 78 72-150 37-120 (296)
439 2fu5_C RAS-related protein RAB 54.3 3.8 0.00013 34.0 1.0 22 60-84 8-29 (183)
440 2o52_A RAS-related protein RAB 54.1 6.8 0.00023 33.4 2.7 22 60-84 25-46 (200)
441 3iby_A Ferrous iron transport 54.1 6.5 0.00022 35.7 2.7 20 62-84 3-22 (256)
442 3t34_A Dynamin-related protein 53.9 7.7 0.00026 36.8 3.2 24 59-85 32-56 (360)
443 1moz_A ARL1, ADP-ribosylation 53.7 5 0.00017 33.1 1.7 22 60-84 18-39 (183)
444 3b1v_A Ferrous iron uptake tra 53.7 6.8 0.00023 36.1 2.7 21 61-84 4-24 (272)
445 2fna_A Conserved hypothetical 53.7 7.5 0.00026 35.7 3.0 24 62-88 32-55 (357)
446 2f7s_A C25KG, RAS-related prot 53.7 7 0.00024 33.5 2.7 22 60-84 25-46 (217)
447 1qvr_A CLPB protein; coiled co 53.6 10 0.00035 40.6 4.5 35 61-98 192-233 (854)
448 1ksh_A ARF-like protein 2; sma 53.4 6.1 0.00021 32.8 2.2 22 60-84 18-39 (186)
449 4gzl_A RAS-related C3 botulinu 53.3 7.2 0.00025 33.4 2.7 22 60-84 30-51 (204)
450 1uaa_A REP helicase, protein ( 53.3 7.9 0.00027 40.1 3.4 37 60-99 15-55 (673)
451 2il1_A RAB12; G-protein, GDP, 53.2 5.5 0.00019 33.6 1.9 21 61-84 27-47 (192)
452 2l8b_A Protein TRAI, DNA helic 53.2 8.7 0.0003 34.1 3.2 38 62-101 52-90 (189)
453 3a1s_A Iron(II) transport prot 53.1 7 0.00024 35.5 2.7 21 61-84 6-26 (258)
454 1r6b_X CLPA protein; AAA+, N-t 52.8 29 0.00099 36.3 7.7 35 50-87 478-512 (758)
455 3te6_A Regulatory protein SIR3 52.7 7.9 0.00027 36.9 3.1 26 62-90 47-72 (318)
456 1a5t_A Delta prime, HOLB; zinc 52.7 15 0.00051 34.4 5.0 32 56-90 20-51 (334)
457 2ck3_A ATP synthase subunit al 52.5 23 0.00078 36.1 6.5 48 64-115 166-221 (510)
458 2c78_A Elongation factor TU-A; 52.4 8.6 0.00029 37.3 3.3 31 59-92 10-40 (405)
459 3vfd_A Spastin; ATPase, microt 51.8 9.3 0.00032 36.6 3.5 33 60-98 148-180 (389)
460 1r6b_X CLPA protein; AAA+, N-t 51.7 12 0.00041 39.2 4.6 28 60-90 207-234 (758)
461 4imr_A 3-oxoacyl-(acyl-carrier 51.7 1E+02 0.0034 27.7 10.4 39 62-106 34-72 (275)
462 2x8a_A Nuclear valosin-contain 51.6 29 0.001 31.6 6.7 22 63-87 47-68 (274)
463 2i1q_A DNA repair and recombin 51.6 9.5 0.00033 35.5 3.4 36 63-101 101-152 (322)
464 2v6i_A RNA helicase; membrane, 51.5 12 0.00042 36.5 4.3 52 62-119 4-56 (431)
465 1kjn_A MTH0777; hypotethical p 51.3 12 0.0004 32.2 3.6 26 75-100 20-45 (157)
466 3cmw_A Protein RECA, recombina 51.3 8 0.00027 45.0 3.3 69 72-145 392-468 (1706)
467 1z6g_A Guanylate kinase; struc 51.3 9.7 0.00033 33.5 3.3 24 61-87 24-47 (218)
468 2h57_A ADP-ribosylation factor 51.2 6.4 0.00022 33.0 1.9 22 61-85 22-43 (190)
469 3cpj_B GTP-binding protein YPT 51.1 8.6 0.00029 33.3 2.9 23 60-85 13-35 (223)
470 2zan_A Vacuolar protein sortin 51.0 8.8 0.0003 37.8 3.2 26 59-87 166-191 (444)
471 3hdt_A Putative kinase; struct 50.9 9 0.00031 34.4 3.0 25 61-87 14-38 (223)
472 3pxg_A Negative regulator of g 50.8 11 0.00039 37.3 4.0 26 61-89 202-227 (468)
473 1rif_A DAR protein, DNA helica 50.7 8.2 0.00028 35.0 2.7 28 71-98 136-164 (282)
474 2vhj_A Ntpase P4, P4; non- hyd 50.2 6 0.00021 38.1 1.8 31 63-99 126-156 (331)
475 3cmu_A Protein RECA, recombina 50.0 13 0.00043 44.1 4.6 80 62-150 1429-1519(2050)
476 1pjr_A PCRA; DNA repair, DNA r 49.8 14 0.00048 38.7 4.7 37 60-99 24-64 (724)
477 3cmw_A Protein RECA, recombina 49.7 13 0.00045 43.2 4.8 69 72-145 741-817 (1706)
478 4b4t_K 26S protease regulatory 49.3 10 0.00035 37.7 3.3 33 60-98 206-238 (428)
479 2qen_A Walker-type ATPase; unk 49.3 9.2 0.00031 35.0 2.9 23 62-87 33-55 (350)
480 3i8s_A Ferrous iron transport 49.1 8.6 0.00029 35.2 2.6 21 61-84 4-24 (274)
481 3lxx_A GTPase IMAP family memb 49.1 9 0.00031 33.8 2.7 21 61-84 30-50 (239)
482 2gza_A Type IV secretion syste 49.1 7.5 0.00026 37.3 2.3 25 62-89 177-201 (361)
483 1c9k_A COBU, adenosylcobinamid 49.0 12 0.00041 32.7 3.4 33 63-102 2-34 (180)
484 1d2e_A Elongation factor TU (E 49.0 10 0.00036 36.6 3.3 28 61-91 4-31 (397)
485 4a74_A DNA repair and recombin 49.0 15 0.0005 31.6 4.0 24 63-89 28-51 (231)
486 4dhe_A Probable GTP-binding pr 48.6 3.8 0.00013 35.3 0.1 21 61-84 30-50 (223)
487 1orr_A CDP-tyvelose-2-epimeras 48.3 70 0.0024 29.0 8.9 73 72-148 8-83 (347)
488 3c5h_A Glucocorticoid receptor 48.2 11 0.00039 33.8 3.2 23 61-85 20-50 (255)
489 2x77_A ADP-ribosylation factor 48.1 6.8 0.00023 32.7 1.7 21 60-83 22-42 (189)
490 2jlq_A Serine protease subunit 48.1 11 0.00038 37.0 3.4 28 72-99 28-56 (451)
491 3pvs_A Replication-associated 48.1 9.3 0.00032 37.9 2.9 24 61-87 51-74 (447)
492 1svm_A Large T antigen; AAA+ f 48.0 11 0.00036 36.8 3.2 23 62-87 171-193 (377)
493 1udb_A Epimerase, UDP-galactos 48.0 94 0.0032 28.1 9.7 74 72-148 7-83 (338)
494 2z83_A Helicase/nucleoside tri 48.0 10 0.00035 37.4 3.1 35 62-99 23-58 (459)
495 4b4o_A Epimerase family protei 47.9 13 0.00046 33.6 3.7 30 71-102 6-35 (298)
496 2c9o_A RUVB-like 1; hexameric 47.8 11 0.00038 37.1 3.4 35 60-98 63-97 (456)
497 1h65_A Chloroplast outer envel 47.7 9.5 0.00032 34.5 2.7 22 60-84 39-60 (270)
498 3lrx_A Putative hydrogenase; a 47.6 9.7 0.00033 32.0 2.5 36 60-102 23-58 (158)
499 3r7w_A Gtpase1, GTP-binding pr 47.4 8.6 0.00029 35.8 2.4 22 61-85 4-25 (307)
500 3mw8_A Uroporphyrinogen-III sy 47.2 29 0.00098 30.7 5.8 68 245-320 117-185 (240)
No 1
>4ehx_A Tetraacyldisaccharide 4'-kinase; membrane protein, lipid A, P-loop, P-loop containing nucleoside triphosphate hydrolase; HET: EPE; 1.90A {Aquifex aeolicus} PDB: 4ehy_A* 4ehw_A
Probab=100.00 E-value=3.6e-82 Score=616.70 Aligned_cols=290 Identities=31% Similarity=0.430 Sum_probs=242.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhcCCCccCCCCCcEEEEcCcccCCCCchHHHHHHHHHHHhCCCceEEEecCCCC---
Q 017904 27 LIPLLSLASSLYGISLFLRHSFYRFGFFSKHRLPVPVISVGNLTWGGNGKTPMVEFLAHCLADSEISPLILTRGYAG--- 103 (364)
Q Consensus 27 L~~lL~plS~lY~~~~~~R~~~y~~gi~~~~~~~vPVIsVGNltvGGtGKTP~v~~L~~~L~~~g~kvaIlsRGYg~--- 103 (364)
|+.+|+||||||++++++||++|++|+++++++|+|||||||||+|||||||+++||+++|+ +++++|||||||+
T Consensus 2 L~~~L~PlS~ly~~i~~~R~~ly~~~~~k~~~~~vPVI~VGNitvGGTGKTP~vi~L~~~L~--~~~~~ilsRGYg~~~~ 79 (315)
T 4ehx_A 2 LRSSLLPFSYLYEKIINFRNTLYDKGFLKIKKLPVPVISVGNLSVGGSGKTSFVMYLADLLK--DKRVCILSRGYKRKSK 79 (315)
T ss_dssp CGGGGHHHHHHHHHHHHHHHHHHHTTCSCCBCCSSCEEEEEESBSSCCSHHHHHHHHHHHTT--TSCEEEEECCCSCSSC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCCEEEECCEEeCCCChHHHHHHHHHHHh--hcCceEEeeccccccc
Confidence 56789999999999999999999999999999999999999999999999999999999996 4589999999985
Q ss_pred ------------------CchHHHHHHHhCCCCEEEeccccchhHHH-hhhcCCCCEEEEcCCCCCccccCceeEEEEeC
Q 017904 104 ------------------GDEVRMLERHLLERPAKIGKNCINPKVGS-HLKSGKIGAVILDDGMQHWSLRRDLEIVMVNG 164 (364)
Q Consensus 104 ------------------GDE~~lla~~~~~~~v~v~~~~~~~~~~~-~~~~~~~dviIlDDgfQh~~L~rdl~Ivl~Da 164 (364)
||||+|+|+++|+++|+|+.++ ..+.. ++++.++|+|||||||||++|+||++|||+|+
T Consensus 80 ~~~~v~~~~~~~~~~~~~GDEp~lla~~~~~~~v~v~~~R--~~~~~~~~~~~~~dviIlDDGfQh~~l~rDl~Ivv~d~ 157 (315)
T 4ehx_A 80 GTLIVSEYGNLKVSWEEAGDEPYLMAKLLPHVSVVASEDR--YKGGLLALEKLSPEVFILDDGFQHRKLHRDLNILLLKK 157 (315)
T ss_dssp SEEEEEETTEECSCHHHHCHHHHHHHHHCTTSEEEEESSH--HHHHHHHHHHHCCSEEEEETCTTCTTBCCSEEEEEEEH
T ss_pred CceEEeecccccCCcccccCHHHHHHHhCCCceEEEecch--HHHHHHHhhccCCcEEEecCccccccccccceEEEeee
Confidence 8999999999999988887753 33333 34556899999999999999999999999994
Q ss_pred CCCCCCCccccCCCCCCchhhhccccEEEEcCCcchhhhhhHHHHHHHHhhccCCcEEEEEEecceeEeecCCCCccccc
Q 017904 165 LMPWGNRKLLPLGPLREPLMALKRADIAVVHHADLISEQNLKDIELEMRDIKKSLSIFFTRMVPSYLFEVGNINSKIPLT 244 (364)
Q Consensus 165 ~~~~gn~~~lPaG~LREp~~~L~rAd~ivvtk~d~~~~~~~~~i~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 244 (364)
++||+++||+||||||+++|+|||+||+|+.+.... +.....+.+........+. ....+..+++
T Consensus 158 --~~gng~lLPaGpLREp~~~l~raD~iii~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 222 (315)
T 4ehx_A 158 --KDLKDRLLPAGNLREPLKEIRRADALVLTYQEVEPF-----------EFFTGKPTFKMFREFCCLL--NSDFEEVPFD 222 (315)
T ss_dssp --HHHTCCBTTTSSBSSCGGGGGGCSEEEEECTTTSCC-----------CCCCSSCEEEEEEEEEEEE--CTTSCEECGG
T ss_pred --eccCCeecccccccCChhHhhhccEEEEecCCcchh-----------hHhhccchhhhcchhhhhh--cccccccchh
Confidence 579999999999999999999999999998543211 1123456665544433332 2233344667
Q ss_pred ccCCCeEEEEecCCChHHHHHHHHHhCCcccccccCCCCCCCCHHHHHHHHHHHHhhhcCCCCCCeEEecccCcccChhH
Q 017904 245 AVCNANVLCVSAIGSANAFVQSLQKLGPCSVNRLDFNDHHSFQARDIEMIKKKLEELEGKFNPKPIVVVTEKDYDRDPEI 324 (364)
Q Consensus 245 ~~~~~~v~a~sGIg~P~~F~~~L~~~G~~~~~~~~f~DHh~yt~~dl~~l~~~~~~~~~~~~~~~~ivtTEKDaVKl~~~ 324 (364)
.++|++++||||||||++|+++|+++|+++++++.|||||.||+.+++ .+..|||||||||||+.
T Consensus 223 ~~~~~~v~a~aGIgnP~~F~~~L~~~g~~i~~~~~fpDHh~fs~~~~~--------------~~~~iltTEKDaVKl~~- 287 (315)
T 4ehx_A 223 ILKEREVIAFSGLGDNGQFRKVLKNLGIKVKEFMSFPDHYDYSDFTPE--------------EGEIYLTTPKDLIKLQG- 287 (315)
T ss_dssp GGTTCCEEEEESSTHHHHHHHHHHHHTCCEEEEEECCTTCCCSSCCCC--------------TTCCEEECHHHHTTCTT-
T ss_pred hhhhhhhhhhhhcCCcHHHHHHHHHcCCceeeeEecCChhhhchhhhc--------------cCCeEEECchhhhhCcC-
Confidence 789999999999999999999999999999999999999999965543 23579999999999864
Q ss_pred HhhhccceEEEEeeEEEEeccCCCChHHHHHHHHHh
Q 017904 325 LMHLEAYKVLVLCSKLQIIPCRGCTEDSFKLLLKEL 360 (364)
Q Consensus 325 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~~l~~~ 360 (364)
+ .++|++++++++. +++.|.++|+++
T Consensus 288 ---~--~~i~~l~i~~~i~-----~e~~l~~~i~ki 313 (315)
T 4ehx_A 288 ---Y--ENVFALNFKVKLE-----REEKLKKLIYRI 313 (315)
T ss_dssp ---C--TTEEEEEEEEEET-----THHHHHHHHHHT
T ss_pred ---c--CCCEEEEEEEEEC-----ChHHHHHHHHHh
Confidence 2 3589999999984 677888888765
No 2
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=98.45 E-value=7.4e-07 Score=79.60 Aligned_cols=144 Identities=14% Similarity=0.186 Sum_probs=85.0
Q ss_pred EEEEcCcccCCCCchHHHHHHHHHHHhCCCceEEEecCCCCCchHHHHHHHhCCCCEEE-eccc---cchh-HHHhh-hc
Q 017904 63 VISVGNLTWGGNGKTPMVEFLAHCLADSEISPLILTRGYAGGDEVRMLERHLLERPAKI-GKNC---INPK-VGSHL-KS 136 (364)
Q Consensus 63 VIsVGNltvGGtGKTP~v~~L~~~L~~~g~kvaIlsRGYg~GDE~~lla~~~~~~~v~v-~~~~---~~~~-~~~~~-~~ 136 (364)
|+++|. +|+|||+++..|+..+... ++++++...++.+-.+..+.+ .+..+.. .... .... ....+ ..
T Consensus 33 i~i~G~---~g~GKTTl~~~l~~~~~~~-~~~~~i~~d~~~~~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (221)
T 2wsm_A 33 VNIMGA---IGSGKTLLIERTIERIGNE-VKIGAMLGDVVSKADYERVRR--FGIKAEAISTGKECHLDAHMIYHRLKKF 106 (221)
T ss_dssp EEEEEC---TTSCHHHHHHHHHHHHTTT-SCEEEEECSCCCHHHHHHHHT--TTCEEEECCCTTCSSCCHHHHHTTGGGG
T ss_pred EEEEcC---CCCCHHHHHHHHHHHhccC-CeEEEEecCCCCchhHHHHHh--CCCcEEEecCCceeecccHHHHHHHHhc
Confidence 556663 6999999999999998665 899999988864322333322 2333211 1111 1111 11111 33
Q ss_pred CCCCEEEEc-----CCCCCccccCceeEEEEeCCCCCCCCccccCCCCCCchhhhccccEEEEcCCcchhh--hhhHHHH
Q 017904 137 GKIGAVILD-----DGMQHWSLRRDLEIVMVNGLMPWGNRKLLPLGPLREPLMALKRADIAVVHHADLISE--QNLKDIE 209 (364)
Q Consensus 137 ~~~dviIlD-----DgfQh~~L~rdl~Ivl~Da~~~~gn~~~lPaG~LREp~~~L~rAd~ivvtk~d~~~~--~~~~~i~ 209 (364)
.++|++|+| +.-.++.+..+.-|+|+|+..+. ... ..-...+..++++|+||.|+.+. .+.+.+.
T Consensus 107 ~~~d~iiidt~G~~~~~~~~~~~~~~~i~vvd~~~~~--~~~------~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~ 178 (221)
T 2wsm_A 107 SDCDLLLIENVGNLICPVDFDLGENYRVVMVSVTEGD--DVV------EKHPEIFRVADLIVINKVALAEAVGADVEKMK 178 (221)
T ss_dssp TTCSEEEEEEEEBSSGGGGCCCSCSEEEEEEEGGGCT--THH------HHCHHHHHTCSEEEEECGGGHHHHTCCHHHHH
T ss_pred CCCCEEEEeCCCCCCCCchhccccCcEEEEEeCCCcc--hhh------hhhhhhhhcCCEEEEecccCCcchhhHHHHHH
Confidence 468999998 33234445677889999987642 111 01123457789999999998754 2455666
Q ss_pred HHHHhhccCCc
Q 017904 210 LEMRDIKKSLS 220 (364)
Q Consensus 210 ~~l~~~~~~~~ 220 (364)
+.+...++..+
T Consensus 179 ~~~~~~~~~~~ 189 (221)
T 2wsm_A 179 ADAKLINPRAK 189 (221)
T ss_dssp HHHHHHCTTSE
T ss_pred HHHHHhCCCCe
Confidence 66655433333
No 3
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=98.16 E-value=6.9e-05 Score=72.92 Aligned_cols=143 Identities=16% Similarity=0.150 Sum_probs=76.6
Q ss_pred CCcEEEEcCcccCCCCchHHHHHHHHHHHhCCCceEEEecCCCC--------CchHHHHHH-HhCCCCEEEecc-ccch-
Q 017904 60 PVPVISVGNLTWGGNGKTPMVEFLAHCLADSEISPLILTRGYAG--------GDEVRMLER-HLLERPAKIGKN-CINP- 128 (364)
Q Consensus 60 ~vPVIsVGNltvGGtGKTP~v~~L~~~L~~~g~kvaIlsRGYg~--------GDE~~lla~-~~~~~~v~v~~~-~~~~- 128 (364)
..++|.|-+- +|+|||+++..|+..+.++|++|+++.-.-+. ||...+... ..+++.+.-..+ ..+.
T Consensus 78 ~~~~I~i~G~--~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~~~~~~g~~l~d~~~~~~~~~~~~~~i~~~~~~~~~~~ 155 (355)
T 3p32_A 78 NAHRVGITGV--PGVGKSTAIEALGMHLIERGHRVAVLAVDPSSTRTGGSILGDKTRMARLAVHPNAYIRPSPTSGTLGG 155 (355)
T ss_dssp CSEEEEEECC--TTSSHHHHHHHHHHHHHTTTCCEEEEEEC----------------CHHHHTCTTEEEECCC--CCHHH
T ss_pred CceEEEEECC--CCCCHHHHHHHHHHHHHhCCCceEEEecCCCCCcccchhccchhhHHhhccCCCeeEEECCCCccccc
Confidence 3455544333 89999999999999999999999999876432 333322211 112221110010 0000
Q ss_pred ------hHHHhhhcCCCCEEEEc-CCCCCc--cc--cCceeEEEEeCCCCCCCCccccCCCCCCchhhhccccEEEEcCC
Q 017904 129 ------KVGSHLKSGKIGAVILD-DGMQHW--SL--RRDLEIVMVNGLMPWGNRKLLPLGPLREPLMALKRADIAVVHHA 197 (364)
Q Consensus 129 ------~~~~~~~~~~~dviIlD-DgfQh~--~L--~rdl~Ivl~Da~~~~gn~~~lPaG~LREp~~~L~rAd~ivvtk~ 197 (364)
+....+...+.+++|+| -|+... .+ .-|+-|+|+|+...-.. .. +... -+..++++|+||.
T Consensus 156 ~~~~t~d~i~~~~~~~~~~iiiDTpGi~~~~~~~~~~aD~vl~V~d~~~~~~~-~~-----l~~~--~~~~p~ivVlNK~ 227 (355)
T 3p32_A 156 VTRATRETVVLLEAAGFDVILIETVGVGQSEVAVANMVDTFVLLTLARTGDQL-QG-----IKKG--VLELADIVVVNKA 227 (355)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEEECSCSSHHHHHHTTCSEEEEEEESSTTCTT-TT-----CCTT--SGGGCSEEEEECC
T ss_pred hhHHHHHHHHHHhhCCCCEEEEeCCCCCcHHHHHHHhCCEEEEEECCCCCccH-HH-----HHHh--HhhcCCEEEEECC
Confidence 01122334578999999 554222 12 34556788897543111 11 1111 2446899999999
Q ss_pred cchhhhhhHHHHHHH
Q 017904 198 DLISEQNLKDIELEM 212 (364)
Q Consensus 198 d~~~~~~~~~i~~~l 212 (364)
|..+..+.+.....+
T Consensus 228 Dl~~~~~~~~~~~~l 242 (355)
T 3p32_A 228 DGEHHKEARLAAREL 242 (355)
T ss_dssp CGGGHHHHHHHHHHH
T ss_pred CCcChhHHHHHHHHH
Confidence 987654444333333
No 4
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=98.09 E-value=7.7e-07 Score=85.66 Aligned_cols=152 Identities=14% Similarity=0.219 Sum_probs=94.3
Q ss_pred CCcEEEEcCcccCCCCchHHHHHHHHHHHhCCCceEEEecCCCC----C-------chHHHHHHHhCCCCEEEeccccch
Q 017904 60 PVPVISVGNLTWGGNGKTPMVEFLAHCLADSEISPLILTRGYAG----G-------DEVRMLERHLLERPAKIGKNCINP 128 (364)
Q Consensus 60 ~vPVIsVGNltvGGtGKTP~v~~L~~~L~~~g~kvaIlsRGYg~----G-------DE~~lla~~~~~~~v~v~~~~~~~ 128 (364)
++||++|.+. -|+||||++..|+... .|.|+|||.+..|. | ++...+ .+||.| |+....
T Consensus 3 ~i~v~~i~G~--~GaGKTTll~~l~~~~--~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el---~~gCic---c~~~~~ 72 (318)
T 1nij_A 3 PIAVTLLTGF--LGAGKTTLLRHILNEQ--HGYKIAVIENEFGEVSVDDQLIGDRATQIKTL---TNGCIC---CSRSNE 72 (318)
T ss_dssp CEEEEEEEES--SSSSCHHHHHHHHHSC--CCCCEEEECSSCCSCCEEEEEECTTSCEEEEE---TTSCEE---ECTTSC
T ss_pred cccEEEEEec--CCCCHHHHHHHHHhhc--CCCcEEEEEecCcccCccHHHHhCCCCCEEEE---CCCceE---EcccHH
Confidence 3688777766 4999999999998875 68999999999885 1 111111 245555 321111
Q ss_pred ---hHHHhh---hcCC--CCEEEEc-CCCCCcc-----------ccC--cee--EEEEeCCCCCCCCccccCCCCCCchh
Q 017904 129 ---KVGSHL---KSGK--IGAVILD-DGMQHWS-----------LRR--DLE--IVMVNGLMPWGNRKLLPLGPLREPLM 184 (364)
Q Consensus 129 ---~~~~~~---~~~~--~dviIlD-DgfQh~~-----------L~r--dl~--Ivl~Da~~~~gn~~~lPaG~LREp~~ 184 (364)
....++ .+.. +|.+++| -|+-++. +.+ .++ +.++|+.+ +-+ .++ .+-+...
T Consensus 73 ~~~~l~~l~~~~q~~~~~~~~~v~E~~~l~~p~~~~~~~~~~~~~~~~~~l~~~l~~vd~~~-~~~--~~~--~ls~g~~ 147 (318)
T 1nij_A 73 LEDALLDLLDNLDKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVH-ADE--QMN--QFTIAQS 147 (318)
T ss_dssp HHHHHHHHHHHHHHTSCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTT-HHH--HHH--HCHHHHH
T ss_pred HHHHHHHHHhHHhcCCCCCCEEEEeCCCCCCHHHHHHHHhcCccccCeEEECCEEEEEEHHH-HHH--HHh--hchHHHH
Confidence 112222 3333 4999998 5554321 111 122 56778765 221 111 1223345
Q ss_pred hhccccEEEEcCCcchhhhhhHHHHHHHHhhccCCcEEEEEEec
Q 017904 185 ALKRADIAVVHHADLISEQNLKDIELEMRDIKKSLSIFFTRMVP 228 (364)
Q Consensus 185 ~L~rAd~ivvtk~d~~~~~~~~~i~~~l~~~~~~~~i~~~~~~~ 228 (364)
|...||.+++|++|+.++. +.+.+.++..++...++.+.+.+
T Consensus 148 Q~~~ad~ill~k~dl~de~--~~l~~~l~~l~~~~~ii~~sh~~ 189 (318)
T 1nij_A 148 QVGYADRILLTKTDVAGEA--EKLHERLARINARAPVYTVTHGD 189 (318)
T ss_dssp HHHTCSEEEEECTTTCSCT--HHHHHHHHHHCSSSCEEECCSSC
T ss_pred HHHhCCEEEEECcccCCHH--HHHHHHHHHhCCCCeEEEecccC
Confidence 7889999999999988553 66777777777888888877754
No 5
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=98.04 E-value=2.7e-05 Score=69.51 Aligned_cols=145 Identities=19% Similarity=0.209 Sum_probs=82.4
Q ss_pred cEEEEcCcccCCCCchHHHHHHHHHHHhCCCceEEEecCCCCCchHHHHHHHhCCCCE-EEeccccch----hHHHhh--
Q 017904 62 PVISVGNLTWGGNGKTPMVEFLAHCLADSEISPLILTRGYAGGDEVRMLERHLLERPA-KIGKNCINP----KVGSHL-- 134 (364)
Q Consensus 62 PVIsVGNltvGGtGKTP~v~~L~~~L~~~g~kvaIlsRGYg~GDE~~lla~~~~~~~v-~v~~~~~~~----~~~~~~-- 134 (364)
-|+++|. +|+|||+++..++..+... .+++++..+|+.+-....+.+ .+..+ .+..+..+. +....+
T Consensus 40 ~i~ivG~---~gvGKTtl~~~l~~~~~~~-~~~~~i~~d~~~~~d~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~ 113 (226)
T 2hf9_A 40 AFDFMGA---IGSGKTLLIEKLIDNLKDK-YKIACIAGDVIAKFDAERMEK--HGAKVVPLNTGKECHLDAHLVGHALED 113 (226)
T ss_dssp EEEEEES---TTSSHHHHHHHHHHHHTTT-CCEEEEEEETTTHHHHHHHHT--TTCEEEEEECTTCSSCCHHHHHHHHTT
T ss_pred EEEEEcC---CCCCHHHHHHHHHHHhccC-CeEEEEECCCCCCccHHHHHh--cCCcEEEecCCceEeccHHHHHHHHHH
Confidence 4567776 7999999999999987654 899999998874211222221 12222 222111111 111112
Q ss_pred -hcCCCCEEEEc-CCC----CCccccCceeEEEEeCCCCCCCCccccCCCCCCchhhhccccEEEEcCCcchhhh--hhH
Q 017904 135 -KSGKIGAVILD-DGM----QHWSLRRDLEIVMVNGLMPWGNRKLLPLGPLREPLMALKRADIAVVHHADLISEQ--NLK 206 (364)
Q Consensus 135 -~~~~~dviIlD-Dgf----Qh~~L~rdl~Ivl~Da~~~~gn~~~lPaG~LREp~~~L~rAd~ivvtk~d~~~~~--~~~ 206 (364)
...++|+++.| +|+ ++.....+..+.++|+..+.. .|. .-...+..++++|+||.|+.++. ..+
T Consensus 114 l~~~~~d~~~id~~g~i~~~~s~~~~~~~~~~v~~~~~~~~----~~~----~~~~~~~~~~iiv~NK~Dl~~~~~~~~~ 185 (226)
T 2hf9_A 114 LNLDEIDLLFIENVGNLICPADFDLGTHKRIVVISTTEGDD----TIE----KHPGIMKTADLIVINKIDLADAVGADIK 185 (226)
T ss_dssp SCGGGCSEEEEECCSCSSGGGGCCCSCSEEEEEEEGGGCTT----TTT----TCHHHHTTCSEEEEECGGGHHHHTCCHH
T ss_pred HhcCCCCEEEEeCCCCccCcchhhhccCcEEEEEecCcchh----hHh----hhhhHhhcCCEEEEeccccCchhHHHHH
Confidence 22357999999 442 233345566678888644211 111 11334788999999999987542 345
Q ss_pred HHHHHHHhhccCCc
Q 017904 207 DIELEMRDIKKSLS 220 (364)
Q Consensus 207 ~i~~~l~~~~~~~~ 220 (364)
.+.+.+...++..+
T Consensus 186 ~~~~~~~~~~~~~~ 199 (226)
T 2hf9_A 186 KMENDAKRINPDAE 199 (226)
T ss_dssp HHHHHHHHHCTTSE
T ss_pred HHHHHHHHhCCCCe
Confidence 55555554433333
No 6
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.04 E-value=2.9e-05 Score=78.44 Aligned_cols=152 Identities=13% Similarity=0.079 Sum_probs=85.6
Q ss_pred cEEEEcCcccCCCCchHHHHHHHHHHHhCCCceEEEecCCCCC--chHH-HHHHHhCCCCEEEeccccchh-----HHHh
Q 017904 62 PVISVGNLTWGGNGKTPMVEFLAHCLADSEISPLILTRGYAGG--DEVR-MLERHLLERPAKIGKNCINPK-----VGSH 133 (364)
Q Consensus 62 PVIsVGNltvGGtGKTP~v~~L~~~L~~~g~kvaIlsRGYg~G--DE~~-lla~~~~~~~v~v~~~~~~~~-----~~~~ 133 (364)
.||.+-+. +|+||||++..|+.+|.++|++|++++-+-.+. .|-+ .+++. .++++.......++. +...
T Consensus 101 ~vIlivG~--~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~-~gvpv~~~~~~~dp~~i~~~al~~ 177 (443)
T 3dm5_A 101 TILLMVGI--QGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDR-YHIEVFGNPQEKDAIKLAKEGVDY 177 (443)
T ss_dssp EEEEEECC--TTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGG-GTCEEECCTTCCCHHHHHHHHHHH
T ss_pred eEEEEECc--CCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHh-cCCcEEecCCCCCHHHHHHHHHHH
Confidence 46655555 899999999999999999999999998654331 2222 22222 356554322112221 1122
Q ss_pred hhcCCCCEEEEc-CCCCCc-------------cccCceeEEEEeCCCCCCCCccccCCCCCCchhhhccccEEEEcCCcc
Q 017904 134 LKSGKIGAVILD-DGMQHW-------------SLRRDLEIVMVNGLMPWGNRKLLPLGPLREPLMALKRADIAVVHHADL 199 (364)
Q Consensus 134 ~~~~~~dviIlD-DgfQh~-------------~L~rdl~Ivl~Da~~~~gn~~~lPaG~LREp~~~L~rAd~ivvtk~d~ 199 (364)
+...++|+||+| -|.-|. .+.+|.-++|+|+.. |....--+ +.+..-...+.||+||.|.
T Consensus 178 a~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~--gq~a~~~a----~~f~~~~~i~gVIlTKlD~ 251 (443)
T 3dm5_A 178 FKSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTI--GQQAYNQA----LAFKEATPIGSIIVTKLDG 251 (443)
T ss_dssp HHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGG--GGGHHHHH----HHHHHSCTTEEEEEECCSS
T ss_pred HHhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCC--chhHHHHH----HHHHhhCCCeEEEEECCCC
Confidence 334569999999 344332 234677789999876 32111001 1122223456799999886
Q ss_pred hhhhhhHHHHHHHHhhccCCcEEEEEE
Q 017904 200 ISEQNLKDIELEMRDIKKSLSIFFTRM 226 (364)
Q Consensus 200 ~~~~~~~~i~~~l~~~~~~~~i~~~~~ 226 (364)
.... ..+..... ..+.|+.+...
T Consensus 252 ~~~g--G~~ls~~~--~~g~PI~fig~ 274 (443)
T 3dm5_A 252 SAKG--GGALSAVA--ATGAPIKFIGT 274 (443)
T ss_dssp CSSH--HHHHHHHH--TTCCCEEEEEC
T ss_pred cccc--cHHHHHHH--HHCCCEEEEEc
Confidence 5322 12222222 23678765543
No 7
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.83 E-value=0.00011 Score=74.06 Aligned_cols=218 Identities=13% Similarity=0.095 Sum_probs=109.8
Q ss_pred cEEEEcCcccCCCCchHHHHHHHHHHHhCCCceEEEecCCCCCc--hH-HHHHHHhCCCCEEEeccccchh-----HHHh
Q 017904 62 PVISVGNLTWGGNGKTPMVEFLAHCLADSEISPLILTRGYAGGD--EV-RMLERHLLERPAKIGKNCINPK-----VGSH 133 (364)
Q Consensus 62 PVIsVGNltvGGtGKTP~v~~L~~~L~~~g~kvaIlsRGYg~GD--E~-~lla~~~~~~~v~v~~~~~~~~-----~~~~ 133 (364)
.||.+-+. +|+||||++..|+.+|.++|.+|.++.-.-.+.. |- ..+++ ..++++.......++. +...
T Consensus 98 ~vI~lvG~--~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~-~~gv~~~~~~~~~dp~~i~~~al~~ 174 (433)
T 3kl4_A 98 FIIMLVGV--QGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGN-QIGVQVYGEPNNQNPIEIAKKGVDI 174 (433)
T ss_dssp EEEEECCC--TTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHH-TTTCCEECCTTCSCHHHHHHHHHHH
T ss_pred eEEEEECC--CCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHH-hcCCceeeccccCCHHHHHHHHHHH
Confidence 46655555 7999999999999999999999999986543311 11 22222 2366664332222222 1112
Q ss_pred hhcCCCCEEEEc-CCCCC---------------ccccCceeEEEEeCCCCCCCCccccCCCCCCchhhhccccEEEEcCC
Q 017904 134 LKSGKIGAVILD-DGMQH---------------WSLRRDLEIVMVNGLMPWGNRKLLPLGPLREPLMALKRADIAVVHHA 197 (364)
Q Consensus 134 ~~~~~~dviIlD-DgfQh---------------~~L~rdl~Ivl~Da~~~~gn~~~lPaG~LREp~~~L~rAd~ivvtk~ 197 (364)
+...++|+||+| -|.-| +.+.+|--++|+|+..+ .... ..-+-+..--..+.||+||.
T Consensus 175 a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~g--q~a~----~~a~~f~~~~~~~gVIlTKl 248 (433)
T 3kl4_A 175 FVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIG--QKAY----DLASRFHQASPIGSVIITKM 248 (433)
T ss_dssp TTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGG--GGGH----HHHHHHHHHCSSEEEEEECG
T ss_pred HHhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccc--hHHH----HHHHHHhcccCCcEEEEecc
Confidence 233479999999 45444 13445666889998752 2110 01011111225678999998
Q ss_pred cchhhhhhHHHHHHHHhhccCCcEEEEEEecceeEeecCCCCcccccccCCCeE-EEEecCCChHHHHHHHHHhCCc---
Q 017904 198 DLISEQNLKDIELEMRDIKKSLSIFFTRMVPSYLFEVGNINSKIPLTAVCNANV-LCVSAIGSANAFVQSLQKLGPC--- 273 (364)
Q Consensus 198 d~~~~~~~~~i~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~a~sGIg~P~~F~~~L~~~G~~--- 273 (364)
|.... .......... .+.|+.+..... .+ ..+..+...++ -.+-|.|+-.++.+.+++.-.+
T Consensus 249 D~~a~--~G~als~~~~--~g~Pi~fig~Ge-~v---------~dL~~f~p~~~~~~llg~gd~~~l~e~~~~~~~~~~~ 314 (433)
T 3kl4_A 249 DGTAK--GGGALSAVVA--TGATIKFIGTGE-KI---------DELETFNAKRFVSRILGMGDIESILEKVKGLEEYDKI 314 (433)
T ss_dssp GGCSC--HHHHHHHHHH--HTCEEEEEECCS-SS---------SCEEECCHHHHHHHHHCSSHHHHHHHHHHHC------
T ss_pred ccccc--chHHHHHHHH--HCCCEEEEECCC-Ch---------HhCccCCHHHHHHHhcCCchHHHHHHHHHHhhhHHHH
Confidence 86432 1222222222 267876544310 00 00111100010 0122666666666666543111
Q ss_pred --ccccccCCCCCCCCHHHHHHHHHHHHhhhc
Q 017904 274 --SVNRLDFNDHHSFQARDIEMIKKKLEELEG 303 (364)
Q Consensus 274 --~~~~~~f~DHh~yt~~dl~~l~~~~~~~~~ 303 (364)
..+ ......+.||-+|+.+-.++.+++++
T Consensus 315 ~~~~~-k~~~g~~~f~~~d~~~q~~~~~kmg~ 345 (433)
T 3kl4_A 315 QKKME-DVMEGKGKLTLRDVYAQIIALRKMGP 345 (433)
T ss_dssp --------------CCHHHHHHHHHHHHHCCS
T ss_pred HHHHH-HHHcCCCCCCHHHHHHHHHHHHhccC
Confidence 111 11222237999999776677777653
No 8
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.61 E-value=0.00044 Score=67.29 Aligned_cols=134 Identities=13% Similarity=0.148 Sum_probs=70.3
Q ss_pred CCCcEEEEcCcccCCCCchHHHHHHHHHHHhCCCceEEEecCCCC--------CchHHHHHHHhCCCCEEEe-----c--
Q 017904 59 LPVPVISVGNLTWGGNGKTPMVEFLAHCLADSEISPLILTRGYAG--------GDEVRMLERHLLERPAKIG-----K-- 123 (364)
Q Consensus 59 ~~vPVIsVGNltvGGtGKTP~v~~L~~~L~~~g~kvaIlsRGYg~--------GDE~~lla~~~~~~~v~v~-----~-- 123 (364)
.+.++|++-+- .|+||||++..|+..+...|.+++|++..-.. ||...|- +...+-.+.+. |
T Consensus 72 ~~~~~v~lvG~--pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~~~~~g~~l~d~~rm~-~~~~~~~~~v~~~~~~~~l 148 (349)
T 2www_A 72 PLAFRVGLSGP--PGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSCTSGGSLLGDKTRMT-ELSRDMNAYIRPSPTRGTL 148 (349)
T ss_dssp CSCEEEEEECC--TTSSHHHHHHHHHHHHHHTTCCEEEEECCC----------------C-CSTTCTTEEEECC------
T ss_pred cCceEEEEEcC--CCCCHHHHHHHHHHHhhhcCCeEEEEeecCCCCCcCcchhchHHHHH-HhcCCCCEEEEecCCcccc
Confidence 34666644444 69999999999999999999999999986542 3322111 10000012221 0
Q ss_pred cccchh---HHHhhhcCCCCEEEEc-CCCCC--ccccCcee--EEEEeCCCCCCCCccccCCCCCCchhhhccccEEEEc
Q 017904 124 NCINPK---VGSHLKSGKIGAVILD-DGMQH--WSLRRDLE--IVMVNGLMPWGNRKLLPLGPLREPLMALKRADIAVVH 195 (364)
Q Consensus 124 ~~~~~~---~~~~~~~~~~dviIlD-DgfQh--~~L~rdl~--Ivl~Da~~~~gn~~~lPaG~LREp~~~L~rAd~ivvt 195 (364)
+...+. +...+...+.|++++| -|+.. ..+....| +.|+|+..+... .. +.+ .-+..++++|+|
T Consensus 149 gg~tr~~~~~~~~~~~~~~~~iliDT~Gi~~~~~~l~~~~d~vl~V~d~~~~~~~-~~-----i~~--~il~~~~ivVlN 220 (349)
T 2www_A 149 GGVTRTTNEAILLCEGAGYDIILIETVGVGQSEFAVADMVDMFVLLLPPAGGDEL-QG-----IKR--GIIEMADLVAVT 220 (349)
T ss_dssp ---CTTHHHHHHHHHHTTCSEEEEECCCC--CHHHHHTTCSEEEEEECCC--------------------CCSCSEEEEC
T ss_pred ccchHHHHHHHHhhccCCCCEEEEECCCcchhhhhHHhhCCEEEEEEcCCcchhH-HH-----hHH--HHHhcCCEEEEe
Confidence 000111 1112234578999999 47632 23445555 577898764211 11 111 113558999999
Q ss_pred CCcchhhh
Q 017904 196 HADLISEQ 203 (364)
Q Consensus 196 k~d~~~~~ 203 (364)
|.|+.+..
T Consensus 221 K~Dl~~~~ 228 (349)
T 2www_A 221 KSDGDLIV 228 (349)
T ss_dssp CCSGGGHH
T ss_pred eecCCCch
Confidence 99987543
No 9
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=97.55 E-value=0.001 Score=68.23 Aligned_cols=128 Identities=16% Similarity=0.145 Sum_probs=74.9
Q ss_pred cEEEEcCcccCCCCchHHHHHHHHHHHhCCCceEEEecCCCC-Cc-hH-HHHHHHhCCCCEEEeccccchh-----HHHh
Q 017904 62 PVISVGNLTWGGNGKTPMVEFLAHCLADSEISPLILTRGYAG-GD-EV-RMLERHLLERPAKIGKNCINPK-----VGSH 133 (364)
Q Consensus 62 PVIsVGNltvGGtGKTP~v~~L~~~L~~~g~kvaIlsRGYg~-GD-E~-~lla~~~~~~~v~v~~~~~~~~-----~~~~ 133 (364)
.+|+|-+. +|+||||++..|+.+|.++|++|++++-...+ +. +. -..+.+ .++++.......++. +...
T Consensus 102 ~vI~ivG~--~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~-~~i~v~~~~~~~dp~~i~~~al~~ 178 (504)
T 2j37_W 102 NVIMFVGL--QGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATK-ARIPFYGSYTEMDPVIIASEGVEK 178 (504)
T ss_dssp EEEEEECS--TTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHH-HTCCEEECCCCSCHHHHHHHHHHH
T ss_pred eEEEEECC--CCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhc-cCceEEccCCCCCHHHHHHHHHHH
Confidence 45544444 79999999999999999999999999875432 11 11 112222 256654322111221 1112
Q ss_pred hhcCCCCEEEEc-CCCCCc-------------cccCceeEEEEeCCCCCCCCccccCCCCCCchhhhc---cccEEEEcC
Q 017904 134 LKSGKIGAVILD-DGMQHW-------------SLRRDLEIVMVNGLMPWGNRKLLPLGPLREPLMALK---RADIAVVHH 196 (364)
Q Consensus 134 ~~~~~~dviIlD-DgfQh~-------------~L~rdl~Ivl~Da~~~~gn~~~lPaG~LREp~~~L~---rAd~ivvtk 196 (364)
+...+.|++|+| -|.-|. .+..|.-++|+|+..+. .. ++ -...+. ..+.||+||
T Consensus 179 ~~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~--~~------~~-~a~~~~~~~~i~gvVlNK 249 (504)
T 2j37_W 179 FKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQ--AC------EA-QAKAFKDKVDVASVIVTK 249 (504)
T ss_dssp HHHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCT--TH------HH-HHHHHHHHHCCCCEEEEC
T ss_pred HHHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccc--cH------HH-HHHHHHhhcCceEEEEeC
Confidence 233578999999 344332 12567778999997742 11 10 011222 237899999
Q ss_pred Ccchh
Q 017904 197 ADLIS 201 (364)
Q Consensus 197 ~d~~~ 201 (364)
.|...
T Consensus 250 ~D~~~ 254 (504)
T 2j37_W 250 LDGHA 254 (504)
T ss_dssp TTSCC
T ss_pred Ccccc
Confidence 88753
No 10
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.27 E-value=0.0018 Score=65.01 Aligned_cols=102 Identities=17% Similarity=0.191 Sum_probs=61.0
Q ss_pred cEEEEcCcccCCCCchHHHHHHHHHHHhC-CCceEEEecCCCCCchHHHH---HHHhCCCCEEEeccccchhH--H---H
Q 017904 62 PVISVGNLTWGGNGKTPMVEFLAHCLADS-EISPLILTRGYAGGDEVRML---ERHLLERPAKIGKNCINPKV--G---S 132 (364)
Q Consensus 62 PVIsVGNltvGGtGKTP~v~~L~~~L~~~-g~kvaIlsRGYg~GDE~~ll---a~~~~~~~v~v~~~~~~~~~--~---~ 132 (364)
.||++-+ .||+||||++..|+.+|.++ |++|.++.-+-.+..-.-++ +.. .++++..+....++.. . .
T Consensus 101 ~vI~ivG--~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~-~~l~v~~~~~~~dp~~i~~~~l~ 177 (433)
T 2xxa_A 101 AVVLMAG--LQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQ-VGVDFFPSDVGQKPVDIVNAALK 177 (433)
T ss_dssp EEEEEEC--STTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHH-HTCEECCCCSSSCHHHHHHHHHH
T ss_pred eEEEEEC--CCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhccc-CCeeEEeCCCCCCHHHHHHHHHH
Confidence 3554434 49999999999999999998 99999998875442222122 222 2555432221112221 1 1
Q ss_pred hhhcCCCCEEEEcC-CCCCc-------------cccCceeEEEEeCCC
Q 017904 133 HLKSGKIGAVILDD-GMQHW-------------SLRRDLEIVMVNGLM 166 (364)
Q Consensus 133 ~~~~~~~dviIlDD-gfQh~-------------~L~rdl~Ivl~Da~~ 166 (364)
.+...++|+||+|- |.-|. .+..|--++|+|+..
T Consensus 178 ~~~~~~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~ 225 (433)
T 2xxa_A 178 EAKLKFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMT 225 (433)
T ss_dssp HHHHTTCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTB
T ss_pred HHHhCCCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecch
Confidence 22335789999994 33222 124555577789865
No 11
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=97.24 E-value=0.00033 Score=61.75 Aligned_cols=41 Identities=17% Similarity=0.081 Sum_probs=34.3
Q ss_pred CcEEEEcCcccCCCCchHHHHHHHHHHHhCCCceEEEecCCCC
Q 017904 61 VPVISVGNLTWGGNGKTPMVEFLAHCLADSEISPLILTRGYAG 103 (364)
Q Consensus 61 vPVIsVGNltvGGtGKTP~v~~L~~~L~~~g~kvaIlsRGYg~ 103 (364)
+|+|.|.+- -||||||++..|++.|.++|++|+++.++.+.
T Consensus 4 ~~~i~i~G~--sGsGKTTl~~~L~~~l~~~g~~v~~ik~~~~~ 44 (169)
T 1xjc_A 4 MNVWQVVGY--KHSGKTTLMEKWVAAAVREGWRVGTVKHHGHG 44 (169)
T ss_dssp CCEEEEECC--TTSSHHHHHHHHHHHHHHTTCCEEEEECCC--
T ss_pred CEEEEEECC--CCCCHHHHHHHHHHhhHhcCCeeeEEEeCCCC
Confidence 467766655 49999999999999999999999999998764
No 12
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=97.18 E-value=0.00034 Score=61.23 Aligned_cols=121 Identities=16% Similarity=0.075 Sum_probs=70.2
Q ss_pred cEEEEcCcccCCCCchHHHHHHHHHHHhCCCceEEEecCCCCCchHHHHHHHhCCCCEEEeccccchhHHHhhhcCCCCE
Q 017904 62 PVISVGNLTWGGNGKTPMVEFLAHCLADSEISPLILTRGYAGGDEVRMLERHLLERPAKIGKNCINPKVGSHLKSGKIGA 141 (364)
Q Consensus 62 PVIsVGNltvGGtGKTP~v~~L~~~L~~~g~kvaIlsRGYg~GDE~~lla~~~~~~~v~v~~~~~~~~~~~~~~~~~~dv 141 (364)
+||+|.|- -||+|||+++..|+..|.++|+||.++--+..++... .+...-.+.++. ..+ .......+.
T Consensus 2 ~vi~v~s~-kgG~GKTt~a~~la~~la~~g~~vlliD~D~~~~~~~-~~~~~~~~~~~~-~~~--~~~l~~~l~------ 70 (206)
T 4dzz_A 2 KVISFLNP-KGGSGKTTAVINIATALSRSGYNIAVVDTDPQMSLTN-WSKAGKAAFDVF-TAA--SEKDVYGIR------ 70 (206)
T ss_dssp EEEEECCS-STTSSHHHHHHHHHHHHHHTTCCEEEEECCTTCHHHH-HHTTSCCSSEEE-ECC--SHHHHHTHH------
T ss_pred eEEEEEeC-CCCccHHHHHHHHHHHHHHCCCeEEEEECCCCCCHHH-HHhcCCCCCcEE-ecC--cHHHHHHHH------
Confidence 68999987 4999999999999999999999999997664321111 111110111111 111 011111111
Q ss_pred EEEcCCCCCccccCceeEEEEeCCCCCCCCccccCCCCCCchhhhccccEEEE-cCCcchhhhhhHHHHHHHHh
Q 017904 142 VILDDGMQHWSLRRDLEIVMVNGLMPWGNRKLLPLGPLREPLMALKRADIAVV-HHADLISEQNLKDIELEMRD 214 (364)
Q Consensus 142 iIlDDgfQh~~L~rdl~Ivl~Da~~~~gn~~~lPaG~LREp~~~L~rAd~ivv-tk~d~~~~~~~~~i~~~l~~ 214 (364)
.+.++.|+|++|....++ ......+..||.+++ +..+..+ .....+.+.++.
T Consensus 71 ----------~l~~~yD~viiD~~~~~~----------~~~~~~l~~ad~viiv~~~~~~~-~~~~~~~~~l~~ 123 (206)
T 4dzz_A 71 ----------KDLADYDFAIVDGAGSLS----------VITSAAVMVSDLVIIPVTPSPLD-FSAAGSVVTVLE 123 (206)
T ss_dssp ----------HHTTTSSEEEEECCSSSS----------HHHHHHHHHCSEEEEEECSCTTT-HHHHHHHHHHHT
T ss_pred ----------HhcCCCCEEEEECCCCCC----------HHHHHHHHHCCEEEEEecCCHHH-HHHHHHHHHHHH
Confidence 234567888888643221 122446788888776 4555555 556666666654
No 13
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=96.99 E-value=0.0043 Score=59.84 Aligned_cols=132 Identities=18% Similarity=0.196 Sum_probs=70.9
Q ss_pred CcEEEEcCcccCCCCchHHHHHHHHHHHhCCCceEEEecCCCC--------CchHHHHHH--HhCCCCEEEecc------
Q 017904 61 VPVISVGNLTWGGNGKTPMVEFLAHCLADSEISPLILTRGYAG--------GDEVRMLER--HLLERPAKIGKN------ 124 (364)
Q Consensus 61 vPVIsVGNltvGGtGKTP~v~~L~~~L~~~g~kvaIlsRGYg~--------GDE~~lla~--~~~~~~v~v~~~------ 124 (364)
.++|++-+ .+|+|||+++..|+..+...|.+++|++...+. ||...+ .+ ..|+ ..+.+.
T Consensus 56 ~~~i~i~G--~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~~~~~~~il~d~~~~-~~~~~~~~--~~i~~~~~~~~l 130 (341)
T 2p67_A 56 TLRLGVTG--TPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRM-NDLARAEA--AFIRPVPSSGHL 130 (341)
T ss_dssp SEEEEEEE--CTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC----------------CTTTTCTT--EEEEEECC----
T ss_pred CEEEEEEc--CCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCcCCCCcceecccchH-HhhccCCC--ceeecCcccccc
Confidence 45554433 489999999999999999999999999987753 222111 00 0011 111110
Q ss_pred -ccchhHH-H--hhhcCCCCEEEEc-CCCCCc--cccC--ceeEEEEeCCCCCCCCccccCCCCCCchhhhccccEEEEc
Q 017904 125 -CINPKVG-S--HLKSGKIGAVILD-DGMQHW--SLRR--DLEIVMVNGLMPWGNRKLLPLGPLREPLMALKRADIAVVH 195 (364)
Q Consensus 125 -~~~~~~~-~--~~~~~~~dviIlD-DgfQh~--~L~r--dl~Ivl~Da~~~~gn~~~lPaG~LREp~~~L~rAd~ivvt 195 (364)
...+... . .....+.+++|+| -|+-.. .+.+ |+=++|+|+..+ .. + ..+++ .....++++|+|
T Consensus 131 ~g~~~~~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~aD~vl~Vvd~~~~--~~--~--~~l~~--~~~~~p~ivv~N 202 (341)
T 2p67_A 131 GGASQRARELMLLCEAAGYDVVIVETVGVGQSETEVARMVDCFISLQIAGGG--DD--L--QGIKK--GLMEVADLIVIN 202 (341)
T ss_dssp -CHHHHHHHHHHHHHHTTCSEEEEEEECCTTHHHHHHTTCSEEEEEECC------------CCCCH--HHHHHCSEEEEC
T ss_pred chhHHHHHHHHHHhhccCCCEEEEeCCCccchHHHHHHhCCEEEEEEeCCcc--HH--H--HHHHH--hhhcccCEEEEE
Confidence 0001111 1 1224578999999 454322 1233 444788888653 11 1 12332 224567899999
Q ss_pred CCcchhhhhh
Q 017904 196 HADLISEQNL 205 (364)
Q Consensus 196 k~d~~~~~~~ 205 (364)
|.|.....+.
T Consensus 203 K~Dl~~~~~~ 212 (341)
T 2p67_A 203 KDDGDNHTNV 212 (341)
T ss_dssp CCCTTCHHHH
T ss_pred CCCCCChHHH
Confidence 9998754333
No 14
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=96.94 E-value=0.0007 Score=61.54 Aligned_cols=45 Identities=22% Similarity=0.170 Sum_probs=38.5
Q ss_pred cEEEEcCcccCCCCchHHHHHHHHHHHhCCCceEEEecCCCCCchH
Q 017904 62 PVISVGNLTWGGNGKTPMVEFLAHCLADSEISPLILTRGYAGGDEV 107 (364)
Q Consensus 62 PVIsVGNltvGGtGKTP~v~~L~~~L~~~g~kvaIlsRGYg~GDE~ 107 (364)
.||+|.|- -||+|||+++..|+..|.++|+||.++--+.+.++-.
T Consensus 3 ~vi~v~s~-kgGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~~~ 47 (260)
T 3q9l_A 3 RIIVVTSG-KGGVGKTTSSAAIATGLAQKGKKTVVIDFAIGLRNLD 47 (260)
T ss_dssp EEEEEECS-STTSSHHHHHHHHHHHHHHTTCCEEEEECCCSSCCHH
T ss_pred eEEEEECC-CCCCcHHHHHHHHHHHHHhCCCcEEEEECCCCCCChh
Confidence 68999886 4999999999999999999999999998876544433
No 15
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=96.79 E-value=0.0025 Score=58.80 Aligned_cols=36 Identities=19% Similarity=0.027 Sum_probs=29.4
Q ss_pred cEEEEcCcccCCCCchHHHHHHHHHHHhCCCceEEEecC
Q 017904 62 PVISVGNLTWGGNGKTPMVEFLAHCLADSEISPLILTRG 100 (364)
Q Consensus 62 PVIsVGNltvGGtGKTP~v~~L~~~L~~~g~kvaIlsRG 100 (364)
.|+..| .||+|||+++..++..+.++|++|.++.=.
T Consensus 8 ~I~~~~---kgGvGKTt~a~~la~~l~~~G~~V~v~d~D 43 (228)
T 2r8r_A 8 KVFLGA---APGVGKTYAMLQAAHAQLRQGVRVMAGVVE 43 (228)
T ss_dssp EEEEES---STTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred EEEEEC---CCCCcHHHHHHHHHHHHHHCCCCEEEEEeC
Confidence 344444 499999999999999999999999777554
No 16
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=96.74 E-value=0.0013 Score=59.03 Aligned_cols=41 Identities=27% Similarity=0.284 Sum_probs=36.1
Q ss_pred cEEEEcCcccCCCCchHHHHHHHHHHHhCCCceEEEecCCCC
Q 017904 62 PVISVGNLTWGGNGKTPMVEFLAHCLADSEISPLILTRGYAG 103 (364)
Q Consensus 62 PVIsVGNltvGGtGKTP~v~~L~~~L~~~g~kvaIlsRGYg~ 103 (364)
.+|+|.|- -||+|||+++..|+..|.++|+||.++--+...
T Consensus 3 ~~i~v~s~-kgGvGKTt~a~~LA~~la~~g~~VlliD~D~~~ 43 (237)
T 1g3q_A 3 RIISIVSG-KGGTGKTTVTANLSVALGDRGRKVLAVDGDLTM 43 (237)
T ss_dssp EEEEEECS-STTSSHHHHHHHHHHHHHHTTCCEEEEECCTTS
T ss_pred eEEEEecC-CCCCCHHHHHHHHHHHHHhcCCeEEEEeCCCCC
Confidence 58888885 599999999999999999999999999877643
No 17
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=96.74 E-value=0.0012 Score=61.66 Aligned_cols=40 Identities=20% Similarity=0.209 Sum_probs=34.4
Q ss_pred CcEEEEcCcccCCCCchHHHHHHHHHHHhCCCceEEEecCCC
Q 017904 61 VPVISVGNLTWGGNGKTPMVEFLAHCLADSEISPLILTRGYA 102 (364)
Q Consensus 61 vPVIsVGNltvGGtGKTP~v~~L~~~L~~~g~kvaIlsRGYg 102 (364)
..||+| + .-||+|||+++..||..|.++|+||.+|==+-.
T Consensus 2 MkvIav-s-~KGGvGKTT~a~nLA~~La~~G~rVlliD~D~q 41 (289)
T 2afh_E 2 MRQCAI-Y-GKGGIGKSTTTQNLVAALAEMGKKVMIVGCDPK 41 (289)
T ss_dssp CEEEEE-E-ECTTSSHHHHHHHHHHHHHHTTCCEEEEEECSS
T ss_pred ceEEEE-e-CCCcCcHHHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 368889 5 589999999999999999999999999955543
No 18
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=96.73 E-value=0.0011 Score=59.33 Aligned_cols=39 Identities=28% Similarity=0.357 Sum_probs=33.6
Q ss_pred cEEEEcCcccCCCCchHHHHHHHHHHHhCCCceEEEecCCC
Q 017904 62 PVISVGNLTWGGNGKTPMVEFLAHCLADSEISPLILTRGYA 102 (364)
Q Consensus 62 PVIsVGNltvGGtGKTP~v~~L~~~L~~~g~kvaIlsRGYg 102 (364)
.||+|.|- -||+|||+++..|+..|.++| ||.++--+..
T Consensus 1 kvI~v~s~-KGGvGKTT~a~~LA~~la~~g-~VlliD~D~q 39 (209)
T 3cwq_A 1 MIITVASF-KGGVGKTTTAVHLSAYLALQG-ETLLIDGDPN 39 (209)
T ss_dssp CEEEEEES-STTSSHHHHHHHHHHHHHTTS-CEEEEEECTT
T ss_pred CEEEEEcC-CCCCcHHHHHHHHHHHHHhcC-CEEEEECCCC
Confidence 37888886 499999999999999999999 9999966543
No 19
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.73 E-value=0.0082 Score=57.09 Aligned_cols=101 Identities=16% Similarity=0.133 Sum_probs=61.3
Q ss_pred EEEEcCcccCCCCchHHHHHHHHHHHhCCCceEEEecCCCCCchHHH---HHHHhCCCCEEEeccccchh-----HHHhh
Q 017904 63 VISVGNLTWGGNGKTPMVEFLAHCLADSEISPLILTRGYAGGDEVRM---LERHLLERPAKIGKNCINPK-----VGSHL 134 (364)
Q Consensus 63 VIsVGNltvGGtGKTP~v~~L~~~L~~~g~kvaIlsRGYg~GDE~~l---la~~~~~~~v~v~~~~~~~~-----~~~~~ 134 (364)
+|++-+ .+|+|||+++..|+..+..+|.+|.++.-...+.-..-+ +++.. ++++..+....++. +...+
T Consensus 100 vi~i~G--~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~-~v~v~~~~~~~~p~~~~~~~l~~~ 176 (297)
T 1j8m_F 100 VIMLVG--VQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQI-GVPVYGEPGEKDVVGIAKRGVEKF 176 (297)
T ss_dssp EEEEEC--SSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHH-TCCEECCTTCCCHHHHHHHHHHHH
T ss_pred EEEEEC--CCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccC-CeEEEecCCCCCHHHHHHHHHHHH
Confidence 554433 489999999999999999999999999887554211111 23332 56664332111222 11122
Q ss_pred hcCCCCEEEEcC-CCCC--c-------------cccCceeEEEEeCCC
Q 017904 135 KSGKIGAVILDD-GMQH--W-------------SLRRDLEIVMVNGLM 166 (364)
Q Consensus 135 ~~~~~dviIlDD-gfQh--~-------------~L~rdl~Ivl~Da~~ 166 (364)
...++|+||+|= |..| . .+..|--++++|+..
T Consensus 177 ~~~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~ 224 (297)
T 1j8m_F 177 LSEKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASI 224 (297)
T ss_dssp HHTTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGG
T ss_pred HhCCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCc
Confidence 235789999993 3433 1 245566678888753
No 20
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=96.72 E-value=0.0012 Score=60.68 Aligned_cols=42 Identities=21% Similarity=0.358 Sum_probs=37.3
Q ss_pred CCcEEEEcCcccCCCCchHHHHHHHHHHHhCCCceEEEecCCCC
Q 017904 60 PVPVISVGNLTWGGNGKTPMVEFLAHCLADSEISPLILTRGYAG 103 (364)
Q Consensus 60 ~vPVIsVGNltvGGtGKTP~v~~L~~~L~~~g~kvaIlsRGYg~ 103 (364)
..+||+|.|-. ||+|||+++..|+..|. +|+||.++-=+..+
T Consensus 26 ~~~vI~v~s~k-GGvGKTT~a~~LA~~la-~g~~VlliD~D~~~ 67 (267)
T 3k9g_A 26 KPKIITIASIK-GGVGKSTSAIILATLLS-KNNKVLLIDMDTQA 67 (267)
T ss_dssp CCEEEEECCSS-SSSCHHHHHHHHHHHHT-TTSCEEEEEECTTC
T ss_pred CCeEEEEEeCC-CCchHHHHHHHHHHHHH-CCCCEEEEECCCCC
Confidence 35899999885 99999999999999999 99999999777654
No 21
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=96.71 E-value=0.0011 Score=60.72 Aligned_cols=39 Identities=15% Similarity=0.170 Sum_probs=33.8
Q ss_pred cEEEEcCcccCCCCchHHHHHHHHHHHhCCCceEEEecCCC
Q 017904 62 PVISVGNLTWGGNGKTPMVEFLAHCLADSEISPLILTRGYA 102 (364)
Q Consensus 62 PVIsVGNltvGGtGKTP~v~~L~~~L~~~g~kvaIlsRGYg 102 (364)
.||+| + .-||+|||+++..|+..|.++|+||.++=-+-.
T Consensus 2 ~vI~v-s-~KGGvGKTT~a~nLA~~la~~G~~VlliD~D~q 40 (269)
T 1cp2_A 2 RQVAI-Y-GKGGIGKSTTTQNLTSGLHAMGKTIMVVGCDPK 40 (269)
T ss_dssp EEEEE-E-ECTTSSHHHHHHHHHHHHHTTTCCEEEEEECTT
T ss_pred cEEEE-e-cCCCCcHHHHHHHHHHHHHHCCCcEEEEcCCCC
Confidence 57888 5 479999999999999999999999999955543
No 22
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=96.70 E-value=0.0013 Score=58.49 Aligned_cols=36 Identities=14% Similarity=-0.127 Sum_probs=32.0
Q ss_pred cEEEEcCcccCCCCchHHHHHHHHHHHhCCCceEEEe
Q 017904 62 PVISVGNLTWGGNGKTPMVEFLAHCLADSEISPLILT 98 (364)
Q Consensus 62 PVIsVGNltvGGtGKTP~v~~L~~~L~~~g~kvaIls 98 (364)
++|+|.|- -||+|||+++..|+..|.++|+||.++-
T Consensus 2 k~I~v~s~-kgGvGKTt~a~nLa~~la~~G~rVll~d 37 (224)
T 1byi_A 2 KRYFVTGT-DTEVGKTVASCALLQAAKAAGYRTAGYK 37 (224)
T ss_dssp EEEEEEES-STTSCHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred ceEEEEEC-CCCCCHHHHHHHHHHHHHHCCCCEEEEc
Confidence 47888875 4999999999999999999999999973
No 23
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=96.67 E-value=0.011 Score=59.18 Aligned_cols=129 Identities=16% Similarity=0.139 Sum_probs=73.2
Q ss_pred cEEEEcCcccCCCCchHHHHHHHHHHHhCCCceEEEecCCCCC--chHH-HHHHHhCCCCEEEeccccchh-H-HH---h
Q 017904 62 PVISVGNLTWGGNGKTPMVEFLAHCLADSEISPLILTRGYAGG--DEVR-MLERHLLERPAKIGKNCINPK-V-GS---H 133 (364)
Q Consensus 62 PVIsVGNltvGGtGKTP~v~~L~~~L~~~g~kvaIlsRGYg~G--DE~~-lla~~~~~~~v~v~~~~~~~~-~-~~---~ 133 (364)
.||++-+ .+|+||||++..|+.++..+|.+|.++.-.+.+. .+-+ .+++. .++++..+....++. . .. .
T Consensus 99 ~vi~i~G--~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~~~~-~gv~v~~~~~~~~p~~i~~~~l~~ 175 (425)
T 2ffh_A 99 NLWFLVG--LQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEK-VGVPVLEVMDGESPESIRRRVEEK 175 (425)
T ss_dssp EEEEEEC--CTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHHHHH-HTCCEEECCTTCCHHHHHHHHHHH
T ss_pred eEEEEEC--CCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHhccc-CCccEEecCCCCCHHHHHHHHHHH
Confidence 4554443 3899999999999999999999999998877541 1211 12333 366665433212222 1 11 1
Q ss_pred hhcCCCCEEEEcC-CCCCc-------------cccCceeEEEEeCCCCCCCCccccCCCCCCchhhhccccEEEEcCCcc
Q 017904 134 LKSGKIGAVILDD-GMQHW-------------SLRRDLEIVMVNGLMPWGNRKLLPLGPLREPLMALKRADIAVVHHADL 199 (364)
Q Consensus 134 ~~~~~~dviIlDD-gfQh~-------------~L~rdl~Ivl~Da~~~~gn~~~lPaG~LREp~~~L~rAd~ivvtk~d~ 199 (364)
+...++|+||+|= |.-|. .+..|--++|+|+..+ .. .+- ..++....+ .-+.||+||.|.
T Consensus 176 ~~~~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tg--q~-av~--~a~~f~~~l-~i~GVIlTKlD~ 249 (425)
T 2ffh_A 176 ARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTG--QE-ALS--VARAFDEKV-GVTGLVLTKLDG 249 (425)
T ss_dssp HHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGT--TH-HHH--HHHHHHHHT-CCCEEEEESGGG
T ss_pred HHHCCCCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccch--HH-HHH--HHHHHHhcC-CceEEEEeCcCC
Confidence 2235789999992 33222 1236666888998642 21 110 011111111 236789999764
No 24
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=96.65 E-value=0.0016 Score=59.99 Aligned_cols=42 Identities=29% Similarity=0.309 Sum_probs=36.4
Q ss_pred CcEEEEcCcccCCCCchHHHHHHHHHHHhCCCceEEEecCCCC
Q 017904 61 VPVISVGNLTWGGNGKTPMVEFLAHCLADSEISPLILTRGYAG 103 (364)
Q Consensus 61 vPVIsVGNltvGGtGKTP~v~~L~~~L~~~g~kvaIlsRGYg~ 103 (364)
..||+|.|-. ||+|||+++..|+..|.++|+||.++--...+
T Consensus 18 ~~vI~v~s~k-GGvGKTT~a~nLA~~la~~G~~VlliD~D~~~ 59 (262)
T 2ph1_A 18 KSRIAVMSGK-GGVGKSTVTALLAVHYARQGKKVGILDADFLG 59 (262)
T ss_dssp SCEEEEECSS-SCTTHHHHHHHHHHHHHHTTCCEEEEECCSSC
T ss_pred CeEEEEEcCC-CCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence 3689998874 99999999999999999999999999766543
No 25
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=96.62 E-value=0.0017 Score=60.83 Aligned_cols=40 Identities=28% Similarity=0.346 Sum_probs=35.9
Q ss_pred cEEEEcCcccCCCCchHHHHHHHHHHHhCCCceEEEecCCC
Q 017904 62 PVISVGNLTWGGNGKTPMVEFLAHCLADSEISPLILTRGYA 102 (364)
Q Consensus 62 PVIsVGNltvGGtGKTP~v~~L~~~L~~~g~kvaIlsRGYg 102 (364)
.||+|.|- -||+|||+++..|+..|.++|+||.++==+.+
T Consensus 5 kvI~v~s~-KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~ 44 (286)
T 2xj4_A 5 RVIVVGNE-KGGAGKSTIAVHLVTALLYGGAKVAVIDLDLR 44 (286)
T ss_dssp EEEEECCS-SSCTTHHHHHHHHHHHHHHTTCCEEEEECCTT
T ss_pred eEEEEEcC-CCCCCHHHHHHHHHHHHHHCCCcEEEEECCCC
Confidence 48999987 49999999999999999999999999977763
No 26
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.61 E-value=0.015 Score=56.15 Aligned_cols=146 Identities=21% Similarity=0.216 Sum_probs=81.2
Q ss_pred EEEEcCcccCCCCchHHHHHHHHHHHhCCCceEEEecCCCC-C-ch-HHHHHHHhCCCCEEEeccccchh--H---HHhh
Q 017904 63 VISVGNLTWGGNGKTPMVEFLAHCLADSEISPLILTRGYAG-G-DE-VRMLERHLLERPAKIGKNCINPK--V---GSHL 134 (364)
Q Consensus 63 VIsVGNltvGGtGKTP~v~~L~~~L~~~g~kvaIlsRGYg~-G-DE-~~lla~~~~~~~v~v~~~~~~~~--~---~~~~ 134 (364)
+..|| . -|+||||++..|+.+++..|.+|.+......+ + .| ...++++. ++++........+. + ....
T Consensus 132 i~lvG-~--nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~-gv~~v~q~~~~~p~~~v~e~l~~~ 207 (328)
T 3e70_C 132 IMFVG-F--NGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRI-GVKVIKHSYGADPAAVAYDAIQHA 207 (328)
T ss_dssp EEEEC-C--TTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHT-TCEEECCCTTCCHHHHHHHHHHHH
T ss_pred EEEEC-C--CCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHc-CceEEeccccCCHHHHHHHHHHHH
Confidence 44555 3 79999999999999999999999999876543 2 12 22234443 44332111111221 1 1122
Q ss_pred hcCCCCEEEEc-CCCCCc-------------cccCceeEEEEeCCCCCCCCccccCCCCCCchhhh---ccccEEEEcCC
Q 017904 135 KSGKIGAVILD-DGMQHW-------------SLRRDLEIVMVNGLMPWGNRKLLPLGPLREPLMAL---KRADIAVVHHA 197 (364)
Q Consensus 135 ~~~~~dviIlD-DgfQh~-------------~L~rdl~Ivl~Da~~~~gn~~~lPaG~LREp~~~L---~rAd~ivvtk~ 197 (364)
...+.|++++| -|..|. .+..|-.++++|+... .. . .+-...+ ...+.||+||.
T Consensus 208 ~~~~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~--~~-~------~~~~~~~~~~~~it~iilTKl 278 (328)
T 3e70_C 208 KARGIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAG--NA-I------VEQARQFNEAVKIDGIILTKL 278 (328)
T ss_dssp HHHTCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGT--TH-H------HHHHHHHHHHSCCCEEEEECG
T ss_pred HhccchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHH--HH-H------HHHHHHHHHhcCCCEEEEeCc
Confidence 23467999999 455442 2456777889997542 11 1 1111222 25688999997
Q ss_pred cchhhhhhHHHHHHHHhhccCCcEEEEE
Q 017904 198 DLISEQNLKDIELEMRDIKKSLSIFFTR 225 (364)
Q Consensus 198 d~~~~~~~~~i~~~l~~~~~~~~i~~~~ 225 (364)
|... ....+...+... +.||.+..
T Consensus 279 D~~a--~~G~~l~~~~~~--~~pi~~i~ 302 (328)
T 3e70_C 279 DADA--RGGAALSISYVI--DAPILFVG 302 (328)
T ss_dssp GGCS--CCHHHHHHHHHH--TCCEEEEE
T ss_pred CCcc--chhHHHHHHHHH--CCCEEEEe
Confidence 7522 122222222322 56776644
No 27
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=96.61 E-value=0.0013 Score=60.45 Aligned_cols=40 Identities=33% Similarity=0.263 Sum_probs=35.8
Q ss_pred CcEEEEcCcccCCCCchHHHHHHHHHHHhCCCceEEEecCC
Q 017904 61 VPVISVGNLTWGGNGKTPMVEFLAHCLADSEISPLILTRGY 101 (364)
Q Consensus 61 vPVIsVGNltvGGtGKTP~v~~L~~~L~~~g~kvaIlsRGY 101 (364)
.+||+|.|- -||+|||+++..||..|.++|+||.++-=+.
T Consensus 6 ~~vI~v~s~-kGGvGKTt~a~~LA~~la~~g~~VlliD~D~ 45 (257)
T 1wcv_1 6 VRRIALANQ-KGGVGKTTTAINLAAYLARLGKRVLLVDLDP 45 (257)
T ss_dssp CCEEEECCS-SCCHHHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred CEEEEEEeC-CCCchHHHHHHHHHHHHHHCCCCEEEEECCC
Confidence 479999986 5999999999999999999999999996554
No 28
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=96.61 E-value=0.0015 Score=58.77 Aligned_cols=41 Identities=20% Similarity=0.270 Sum_probs=36.5
Q ss_pred CcEEEEcCcccCCCCchHHHHHHHHHHHhC-CCceEEEecCCC
Q 017904 61 VPVISVGNLTWGGNGKTPMVEFLAHCLADS-EISPLILTRGYA 102 (364)
Q Consensus 61 vPVIsVGNltvGGtGKTP~v~~L~~~L~~~-g~kvaIlsRGYg 102 (364)
..||+|.|- -||+|||+++..|+..|.++ |+||.++--+..
T Consensus 4 ~~vI~v~s~-kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~ 45 (245)
T 3ea0_A 4 KRVFGFVSA-KGGDGGSCIAANFAFALSQEPDIHVLAVDISLP 45 (245)
T ss_dssp CEEEEEEES-STTSSHHHHHHHHHHHHTTSTTCCEEEEECCTT
T ss_pred CeEEEEECC-CCCcchHHHHHHHHHHHHhCcCCCEEEEECCCC
Confidence 468989887 49999999999999999998 999999987765
No 29
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=96.57 E-value=0.025 Score=56.67 Aligned_cols=126 Identities=18% Similarity=0.245 Sum_probs=73.1
Q ss_pred cEEEEcCcccCCCCchHHHHHHHHHHHhCCCceEEEecCCCC---CchHHHHHHHhCCCCEEEec-cccch-h-HHHhhh
Q 017904 62 PVISVGNLTWGGNGKTPMVEFLAHCLADSEISPLILTRGYAG---GDEVRMLERHLLERPAKIGK-NCINP-K-VGSHLK 135 (364)
Q Consensus 62 PVIsVGNltvGGtGKTP~v~~L~~~L~~~g~kvaIlsRGYg~---GDE~~lla~~~~~~~v~v~~-~~~~~-~-~~~~~~ 135 (364)
-|+++| . +|+|||+++..|+.++.++|++|.+++-.-.+ -|.-..+++. .++++.-.. ...++ . ....+.
T Consensus 101 vI~ivG-~--~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~-~gv~v~~~~~~~~dp~~i~~~~l~ 176 (432)
T 2v3c_C 101 VILLVG-I--QGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEK-IHVPIYGDETRTKSPVDIVKEGME 176 (432)
T ss_dssp CEEEEC-C--SSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHH-SSCCEECCSSSCCSSSTTHHHHHH
T ss_pred EEEEEC-C--CCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhc-cCcceEecCCCCCCHHHHHHHHHH
Confidence 455666 3 89999999999999999999999999765332 1211112233 466664322 11111 1 111111
Q ss_pred -cCCCCEEEEcCC-CCCc-------------cccCceeEEEEeCCCCCCCCccccCCCCCCchhhhc----cccEEEEcC
Q 017904 136 -SGKIGAVILDDG-MQHW-------------SLRRDLEIVMVNGLMPWGNRKLLPLGPLREPLMALK----RADIAVVHH 196 (364)
Q Consensus 136 -~~~~dviIlDDg-fQh~-------------~L~rdl~Ivl~Da~~~~gn~~~lPaG~LREp~~~L~----rAd~ivvtk 196 (364)
-.++|+||+|.+ .-+. .+..|.-++++|+..+. +. + +-...+. ..+.+|+||
T Consensus 177 ~~~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~--~~-~------~~~~~~~~~~~~i~gvVlnK 247 (432)
T 2v3c_C 177 KFKKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQ--QA-G------IQAKAFKEAVGEIGSIIVTK 247 (432)
T ss_dssp TTSSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGG--GH-H------HHHHHHHTTSCSCEEEEEEC
T ss_pred HhhCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccH--HH-H------HHHHHHhhcccCCeEEEEeC
Confidence 156899999954 3321 12467767888987642 11 0 0111222 236899999
Q ss_pred Ccch
Q 017904 197 ADLI 200 (364)
Q Consensus 197 ~d~~ 200 (364)
.|..
T Consensus 248 ~D~~ 251 (432)
T 2v3c_C 248 LDGS 251 (432)
T ss_dssp SSSC
T ss_pred CCCc
Confidence 8864
No 30
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=96.49 E-value=0.0021 Score=58.73 Aligned_cols=40 Identities=28% Similarity=0.292 Sum_probs=35.0
Q ss_pred cEEEEcCcccCCCCchHHHHHHHHHHHhCCCceEEEecCCC
Q 017904 62 PVISVGNLTWGGNGKTPMVEFLAHCLADSEISPLILTRGYA 102 (364)
Q Consensus 62 PVIsVGNltvGGtGKTP~v~~L~~~L~~~g~kvaIlsRGYg 102 (364)
.+|+|.|- -||+|||+++..|+..|.++|+||.++--+..
T Consensus 3 ~~I~v~s~-kgGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 42 (263)
T 1hyq_A 3 RTITVASG-KGGTGKTTITANLGVALAQLGHDVTIVDADIT 42 (263)
T ss_dssp EEEEEEES-SSCSCHHHHHHHHHHHHHHTTCCEEEEECCCS
T ss_pred eEEEEECC-CCCCCHHHHHHHHHHHHHhCCCcEEEEECCCC
Confidence 57888775 59999999999999999999999999976653
No 31
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=96.44 E-value=0.0019 Score=60.24 Aligned_cols=41 Identities=20% Similarity=0.268 Sum_probs=35.1
Q ss_pred cEEEEcCc-ccCCCCchHHHHHHHHHHHhCCCceEEEecCCC
Q 017904 62 PVISVGNL-TWGGNGKTPMVEFLAHCLADSEISPLILTRGYA 102 (364)
Q Consensus 62 PVIsVGNl-tvGGtGKTP~v~~L~~~L~~~g~kvaIlsRGYg 102 (364)
++|+|.|- .-||+|||+++..||..|.++|+||.+|--+..
T Consensus 35 ~~i~v~~~s~KGGvGKTT~a~nLA~~la~~G~rVlliD~D~q 76 (298)
T 2oze_A 35 EAIVILNNYFKGGVGKSKLSTMFAYLTDKLNLKVLMIDKDLQ 76 (298)
T ss_dssp SCEEEEECCSSSSSSHHHHHHHHHHHHHHTTCCEEEEEECTT
T ss_pred cEEEEEeccCCCCchHHHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 57888774 469999999999999999999999999966554
No 32
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=96.44 E-value=0.0026 Score=59.79 Aligned_cols=41 Identities=20% Similarity=0.102 Sum_probs=36.0
Q ss_pred CCcEEEEcCcccCCCCchHHHHHHHHHHHhCCCceEEEecCCC
Q 017904 60 PVPVISVGNLTWGGNGKTPMVEFLAHCLADSEISPLILTRGYA 102 (364)
Q Consensus 60 ~vPVIsVGNltvGGtGKTP~v~~L~~~L~~~g~kvaIlsRGYg 102 (364)
+..||+|.+ -||+|||+++..||..|.++|+||.+|--+..
T Consensus 40 ~~~vI~v~~--KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~ 80 (307)
T 3end_A 40 GAKVFAVYG--KGGIGKSTTSSNLSAAFSILGKRVLQIGCDPK 80 (307)
T ss_dssp CCEEEEEEC--STTSSHHHHHHHHHHHHHHTTCCEEEEEESSS
T ss_pred CceEEEEEC--CCCccHHHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 457888883 79999999999999999999999999977654
No 33
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.37 E-value=0.0041 Score=54.68 Aligned_cols=40 Identities=23% Similarity=0.446 Sum_probs=34.4
Q ss_pred CcEEEEcCcccCCCCchHHHHHHHHHHHhCCCceEEEecCCC
Q 017904 61 VPVISVGNLTWGGNGKTPMVEFLAHCLADSEISPLILTRGYA 102 (364)
Q Consensus 61 vPVIsVGNltvGGtGKTP~v~~L~~~L~~~g~kvaIlsRGYg 102 (364)
+|+++|-+- -|+|||+++..|++.+..+|++++++.++.+
T Consensus 6 ~~~i~i~G~--sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~ 45 (174)
T 1np6_A 6 IPLLAFAAW--SGTGKTTLLKKLIPALCARGIRPGLIKHTHH 45 (174)
T ss_dssp CCEEEEECC--TTSCHHHHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred ceEEEEEeC--CCCCHHHHHHHHHHhccccCCceeEEeeCCC
Confidence 577766655 4999999999999999999999999999765
No 34
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=96.33 E-value=0.011 Score=56.85 Aligned_cols=39 Identities=21% Similarity=0.240 Sum_probs=32.6
Q ss_pred cEEEEcCcccCCCCchHHHHHHHHHHHhCCCceEEEecCCC
Q 017904 62 PVISVGNLTWGGNGKTPMVEFLAHCLADSEISPLILTRGYA 102 (364)
Q Consensus 62 PVIsVGNltvGGtGKTP~v~~L~~~L~~~g~kvaIlsRGYg 102 (364)
.||+|-+. +|+||||++..|+.++..+|.+|.++.-...
T Consensus 106 ~vI~ivG~--~G~GKTT~~~~LA~~l~~~g~kVllid~D~~ 144 (320)
T 1zu4_A 106 NIFMLVGV--NGTGKTTSLAKMANYYAELGYKVLIAAADTF 144 (320)
T ss_dssp EEEEEESS--TTSSHHHHHHHHHHHHHHTTCCEEEEECCCS
T ss_pred eEEEEECC--CCCCHHHHHHHHHHHHHHCCCeEEEEeCCCc
Confidence 36655554 9999999999999999999999999976654
No 35
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=96.21 E-value=0.0044 Score=56.34 Aligned_cols=40 Identities=13% Similarity=0.130 Sum_probs=32.9
Q ss_pred CcEEEEcCcccCCCCchHHHHHHHHHHHhCCCceEEEecCCCC
Q 017904 61 VPVISVGNLTWGGNGKTPMVEFLAHCLADSEISPLILTRGYAG 103 (364)
Q Consensus 61 vPVIsVGNltvGGtGKTP~v~~L~~~L~~~g~kvaIlsRGYg~ 103 (364)
.+++++.+- ||+|||+++..|+..|. +|++|+++....++
T Consensus 14 ~~i~~~~Gk--gGvGKTTl~~~La~~l~-~g~~v~vvd~D~~~ 53 (262)
T 1yrb_A 14 SMIVVFVGT--AGSGKTTLTGEFGRYLE-DNYKVAYVNLDTGV 53 (262)
T ss_dssp CEEEEEECS--TTSSHHHHHHHHHHHHT-TTSCEEEEECCSSC
T ss_pred eEEEEEeCC--CCCCHHHHHHHHHHHHH-CCCeEEEEeCCCCc
Confidence 344444444 99999999999999999 99999999987653
No 36
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.15 E-value=0.0088 Score=56.82 Aligned_cols=36 Identities=22% Similarity=0.223 Sum_probs=30.0
Q ss_pred EEEEcCcccCCCCchHHHHHHHHHHHh-CCCceEEEecCC
Q 017904 63 VISVGNLTWGGNGKTPMVEFLAHCLAD-SEISPLILTRGY 101 (364)
Q Consensus 63 VIsVGNltvGGtGKTP~v~~L~~~L~~-~g~kvaIlsRGY 101 (364)
|..+|. +|+||||++..|+..+.. +|++|+++.-.-
T Consensus 108 i~lvG~---~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~ 144 (296)
T 2px0_A 108 IVLFGS---TGAGKTTTLAKLAAISMLEKHKKIAFITTDT 144 (296)
T ss_dssp EEEEES---TTSSHHHHHHHHHHHHHHTTCCCEEEEECCC
T ss_pred EEEECC---CCCCHHHHHHHHHHHHHHhcCCEEEEEecCc
Confidence 446663 799999999999999984 899999997653
No 37
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=96.14 E-value=0.0026 Score=61.97 Aligned_cols=41 Identities=29% Similarity=0.186 Sum_probs=36.3
Q ss_pred cEEEEcCcccCCCCchHHHHHHHHHHHhCCCceEEEecCCCC
Q 017904 62 PVISVGNLTWGGNGKTPMVEFLAHCLADSEISPLILTRGYAG 103 (364)
Q Consensus 62 PVIsVGNltvGGtGKTP~v~~L~~~L~~~g~kvaIlsRGYg~ 103 (364)
.||+|-|- -||+|||+++..||..|.++|+||.+|-=...+
T Consensus 2 kvIav~s~-KGGvGKTT~a~nLA~~LA~~G~rVLlID~D~q~ 42 (361)
T 3pg5_A 2 RTISFFNN-KGGVGKTTLSTNVAHYFALQGKRVLYVDCDPQC 42 (361)
T ss_dssp EEEEBCCS-SCCHHHHHHHHHHHHHHHHTTCCEEEEECCTTC
T ss_pred eEEEEEcC-CCCCcHHHHHHHHHHHHHhCCCcEEEEEcCCCC
Confidence 68999888 499999999999999999999999999766544
No 38
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=96.13 E-value=0.0093 Score=55.74 Aligned_cols=65 Identities=18% Similarity=0.116 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHhHhcCCCccCCCCCcEEEEcCcccCCCCchHHHHHHHHHHHhCCCceEEEecCCC
Q 017904 33 LASSLYGISLFLRHSFYRFGFFSKHRLPVPVISVGNLTWGGNGKTPMVEFLAHCLADSEISPLILTRGYA 102 (364)
Q Consensus 33 plS~lY~~~~~~R~~~y~~gi~~~~~~~vPVIsVGNltvGGtGKTP~v~~L~~~L~~~g~kvaIlsRGYg 102 (364)
|-|..-..+-.+|..+... ...-+..||+|.|- .||.|||+++..||..|.+.|.||.+|-=+..
T Consensus 58 ~~~~~~Ea~r~lrt~l~~~----~~~~~~kvI~vts~-kgG~GKTt~a~nLA~~lA~~G~rVLLID~D~~ 122 (271)
T 3bfv_A 58 PKSPISEKFRGIRSNIMFA----NPDSAVQSIVITSE-APGAGKSTIAANLAVAYAQAGYKTLIVDGDMR 122 (271)
T ss_dssp TTSHHHHHHHHHHHHHHHS----STTCCCCEEEEECS-STTSSHHHHHHHHHHHHHHTTCCEEEEECCSS
T ss_pred CCCHHHHHHHHHHHHHHhh----ccCCCCeEEEEECC-CCCCcHHHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 4455555666666655432 11224578998886 49999999999999999999999999965544
No 39
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=96.03 E-value=0.0057 Score=59.92 Aligned_cols=41 Identities=29% Similarity=0.338 Sum_probs=35.8
Q ss_pred CCcEEEEcCcccCCCCchHHHHHHHHHHH------hCCCceEEEecCC
Q 017904 60 PVPVISVGNLTWGGNGKTPMVEFLAHCLA------DSEISPLILTRGY 101 (364)
Q Consensus 60 ~vPVIsVGNltvGGtGKTP~v~~L~~~L~------~~g~kvaIlsRGY 101 (364)
+..||+|.|.- ||+|||+++..||..|. ++|+||.+|-=+-
T Consensus 107 ~~~vIav~s~K-GGvGKTT~a~nLA~~La~~~~~~~~g~rVlliD~D~ 153 (398)
T 3ez2_A 107 EAYVIFISNLK-GGVSKTVSTVSLAHAMRAHPHLLMEDLRILVIDLDP 153 (398)
T ss_dssp SCEEEEECCSS-SSSSHHHHHHHHHHHHHHCTTTGGGCCCEEEEEECT
T ss_pred CCeEEEEEeCC-CCccHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCC
Confidence 35799999985 99999999999999998 4699999996654
No 40
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=95.98 E-value=0.006 Score=59.47 Aligned_cols=41 Identities=17% Similarity=0.110 Sum_probs=35.9
Q ss_pred CCCcEEEEcCcccCCCCchHHHHHHHHHHHhCCCceEEEecC
Q 017904 59 LPVPVISVGNLTWGGNGKTPMVEFLAHCLADSEISPLILTRG 100 (364)
Q Consensus 59 ~~vPVIsVGNltvGGtGKTP~v~~L~~~L~~~g~kvaIlsRG 100 (364)
-+..||+|-|- -||+|||+++..||..|.++|+||.++-=.
T Consensus 141 ~~~kvIav~s~-KGGvGKTT~a~nLA~~La~~g~rVlliD~D 181 (373)
T 3fkq_A 141 DKSSVVIFTSP-CGGVGTSTVAAACAIAHANMGKKVFYLNIE 181 (373)
T ss_dssp TSCEEEEEECS-STTSSHHHHHHHHHHHHHHHTCCEEEEECC
T ss_pred CCceEEEEECC-CCCChHHHHHHHHHHHHHhCCCCEEEEECC
Confidence 34688988876 499999999999999999999999999755
No 41
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=95.85 E-value=0.011 Score=55.73 Aligned_cols=68 Identities=13% Similarity=0.021 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHHHHhHhcCCCccCCCCCcEEEEcCcccCCCCchHHHHHHHHHHHhCCCceEEEecCCCC
Q 017904 31 LSLASSLYGISLFLRHSFYRFGFFSKHRLPVPVISVGNLTWGGNGKTPMVEFLAHCLADSEISPLILTRGYAG 103 (364)
Q Consensus 31 L~plS~lY~~~~~~R~~~y~~gi~~~~~~~vPVIsVGNltvGGtGKTP~v~~L~~~L~~~g~kvaIlsRGYg~ 103 (364)
--|.|..-..+-.+|..+.-. ...-+..||+|-+-. ||.|||+++..||..|.+.|.||.+|-=+..+
T Consensus 66 ~~p~~~~~Ea~r~lrt~l~~~----~~~~~~kvI~vts~k-gG~GKTtva~nLA~~lA~~G~rVLLID~D~~~ 133 (286)
T 3la6_A 66 GNPTDLAIEAIRSLRTSLHFA----MMQAQNNVLMMTGVS-PSIGMTFVCANLAAVISQTNKRVLLIDCDMRK 133 (286)
T ss_dssp HCTTCHHHHHHHHHHHHHHHH----STTTTCCEEEEEESS-SSSSHHHHHHHHHHHHHTTTCCEEEEECCTTT
T ss_pred cCCCCHHHHHHHHHHHHHhhh----ccCCCCeEEEEECCC-CCCcHHHHHHHHHHHHHhCCCCEEEEeccCCC
Confidence 344555566666667655432 112245788888764 99999999999999999999999999766654
No 42
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=95.83 E-value=0.012 Score=55.70 Aligned_cols=65 Identities=20% Similarity=0.102 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHHhHhcCCCccCCCCCcEEEEcCcccCCCCchHHHHHHHHHHHhCCCceEEEecCCC
Q 017904 33 LASSLYGISLFLRHSFYRFGFFSKHRLPVPVISVGNLTWGGNGKTPMVEFLAHCLADSEISPLILTRGYA 102 (364)
Q Consensus 33 plS~lY~~~~~~R~~~y~~gi~~~~~~~vPVIsVGNltvGGtGKTP~v~~L~~~L~~~g~kvaIlsRGYg 102 (364)
|-|.+-..+-.+|..+... ...-+..||+|.+- .||.|||+++..||..|.+.|.||.+|--+..
T Consensus 80 ~~~~~~Ea~r~lrt~l~~~----~~~~~~kvI~vts~-kgG~GKTtva~nLA~~lA~~G~rVLLID~D~r 144 (299)
T 3cio_A 80 PADSAVEAVRALRTSLHFA----MMETENNILMITGA-TPDSGKTFVSSTLAAVIAQSDQKVLFIDADLR 144 (299)
T ss_dssp TTCHHHHHHHHHHHHHHHH----TSSCSCCEEEEEES-SSSSCHHHHHHHHHHHHHHTTCCEEEEECCTT
T ss_pred CCCHHHHHHHHHHHHHHHh----ccCCCCeEEEEECC-CCCCChHHHHHHHHHHHHhCCCcEEEEECCCC
Confidence 3344555555566544322 11223468888876 49999999999999999999999999975553
No 43
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=95.82 E-value=0.008 Score=57.67 Aligned_cols=38 Identities=21% Similarity=0.155 Sum_probs=33.5
Q ss_pred CcEEEEcCcccCCCCchHHHHHHHHHHHhCCCceEEEecC
Q 017904 61 VPVISVGNLTWGGNGKTPMVEFLAHCLADSEISPLILTRG 100 (364)
Q Consensus 61 vPVIsVGNltvGGtGKTP~v~~L~~~L~~~g~kvaIlsRG 100 (364)
..||.|-| =||.||||++..|+..|.++|+||.+|==+
T Consensus 48 aKVIAIaG--KGGVGKTTtavNLA~aLA~~GkkVllID~D 85 (314)
T 3fwy_A 48 AKVFAVYG--KGGIGKSTTSSNLSAAFSILGKRVLQIGCD 85 (314)
T ss_dssp CEEEEEEC--STTSSHHHHHHHHHHHHHHTTCCEEEEEES
T ss_pred ceEEEEEC--CCccCHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 56898866 499999999999999999999999999543
No 44
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=95.76 E-value=0.004 Score=55.69 Aligned_cols=37 Identities=22% Similarity=0.193 Sum_probs=32.2
Q ss_pred EEEcCcccCCCCchHHHHHHHHHHHhCCCceEEEecCCC
Q 017904 64 ISVGNLTWGGNGKTPMVEFLAHCLADSEISPLILTRGYA 102 (364)
Q Consensus 64 IsVGNltvGGtGKTP~v~~L~~~L~~~g~kvaIlsRGYg 102 (364)
|+|.+ -||+|||+++..|+..|.++|+||.+|-=+..
T Consensus 3 I~vs~--kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 39 (254)
T 3kjh_A 3 LAVAG--KGGVGKTTVAAGLIKIMASDYDKIYAVDGDPD 39 (254)
T ss_dssp EEEEC--SSSHHHHHHHHHHHHHHTTTCSCEEEEEECTT
T ss_pred EEEec--CCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 56633 69999999999999999999999999977664
No 45
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=95.66 E-value=0.0057 Score=60.06 Aligned_cols=41 Identities=34% Similarity=0.336 Sum_probs=28.0
Q ss_pred CCcEEEEcCcccCCCCchHHHHHHHHHHH------hCCCceEEEecCC
Q 017904 60 PVPVISVGNLTWGGNGKTPMVEFLAHCLA------DSEISPLILTRGY 101 (364)
Q Consensus 60 ~vPVIsVGNltvGGtGKTP~v~~L~~~L~------~~g~kvaIlsRGY 101 (364)
...||+|.|-- ||+|||+++..|+..|. ++|+||.+|-=+-
T Consensus 110 ~~~vIav~s~K-GGvGKTT~a~nLA~~LA~~g~~~~~g~rVlliD~D~ 156 (403)
T 3ez9_A 110 SPYVIFVVNLK-GGVSKTVSTVTLAHALRVHQDLLRHDLRILVIDLDP 156 (403)
T ss_dssp SCEEEEECCC---------CHHHHHHHHHSCGGGGGGCCCEEEEEESS
T ss_pred CceEEEEEcCC-CCchHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCC
Confidence 45799999985 99999999999999998 5799999996543
No 46
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.61 E-value=0.042 Score=52.47 Aligned_cols=37 Identities=30% Similarity=0.316 Sum_probs=30.7
Q ss_pred EEEEcCcccCCCCchHHHHHHHHHHHhCCCceEEEecCC
Q 017904 63 VISVGNLTWGGNGKTPMVEFLAHCLADSEISPLILTRGY 101 (364)
Q Consensus 63 VIsVGNltvGGtGKTP~v~~L~~~L~~~g~kvaIlsRGY 101 (364)
||++-+. .|+||||++..|+..+..+|.+|.++....
T Consensus 106 vi~ivG~--~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~ 142 (306)
T 1vma_A 106 VIMVVGV--NGTGKTTSCGKLAKMFVDEGKSVVLAAADT 142 (306)
T ss_dssp EEEEECC--TTSSHHHHHHHHHHHHHHTTCCEEEEEECT
T ss_pred EEEEEcC--CCChHHHHHHHHHHHHHhcCCEEEEEcccc
Confidence 5544443 899999999999999999999999997654
No 47
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=95.58 E-value=0.009 Score=57.90 Aligned_cols=40 Identities=23% Similarity=0.152 Sum_probs=32.7
Q ss_pred CcEEEEcCcccCCCCchHHHHHHHHHHHhCCCceEEEecCC
Q 017904 61 VPVISVGNLTWGGNGKTPMVEFLAHCLADSEISPLILTRGY 101 (364)
Q Consensus 61 vPVIsVGNltvGGtGKTP~v~~L~~~L~~~g~kvaIlsRGY 101 (364)
.++|+|-+- -||+|||+++..+|..|.++|+||.+++=+-
T Consensus 25 ~~~i~v~sg-KGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~ 64 (349)
T 3ug7_A 25 GTKYIMFGG-KGGVGKTTMSAATGVYLAEKGLKVVIVSTDP 64 (349)
T ss_dssp SCEEEEEEC-SSSTTHHHHHHHHHHHHHHSSCCEEEEECCT
T ss_pred CCEEEEEeC-CCCccHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 344444333 4999999999999999999999999999765
No 48
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=95.55 E-value=0.066 Score=51.56 Aligned_cols=128 Identities=17% Similarity=0.202 Sum_probs=68.6
Q ss_pred cEE-EEcCcccCCCCchHHHHHHHHHHHhCCCceEEEecCCCC--------CchHHHHHHHhCCCCEEEeccccch----
Q 017904 62 PVI-SVGNLTWGGNGKTPMVEFLAHCLADSEISPLILTRGYAG--------GDEVRMLERHLLERPAKIGKNCINP---- 128 (364)
Q Consensus 62 PVI-sVGNltvGGtGKTP~v~~L~~~L~~~g~kvaIlsRGYg~--------GDE~~lla~~~~~~~v~v~~~~~~~---- 128 (364)
.++ .+|- -|+||||++..|+..+...+.+++|++..... ++.. .+...+.+..+.+.....++
T Consensus 56 ~~v~i~G~---~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~-~i~~v~q~~~~~~~~~~~~~~l~G 131 (337)
T 2qm8_A 56 IRVGITGV---PGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKT-RMARLAIDRNAFIRPSPSSGTLGG 131 (337)
T ss_dssp EEEEEECC---TTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGG-GSTTGGGCTTEEEECCCCCSSHHH
T ss_pred eEEEEECC---CCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhh-hheeeccCcccccccCcccccccc
Confidence 444 5563 59999999999999999888999999865431 1111 01111111112221000000
Q ss_pred ---h---HHHhhhcCCCCEEEEc-CCCCCc--cccCcee--EEEEeCCCCCCCCccccCCCCCCchhhhccccEEEEcCC
Q 017904 129 ---K---VGSHLKSGKIGAVILD-DGMQHW--SLRRDLE--IVMVNGLMPWGNRKLLPLGPLREPLMALKRADIAVVHHA 197 (364)
Q Consensus 129 ---~---~~~~~~~~~~dviIlD-DgfQh~--~L~rdl~--Ivl~Da~~~~gn~~~lPaG~LREp~~~L~rAd~ivvtk~ 197 (364)
. ....+...+.|++++| -|+... .+....| ++++|+..+ .. + -.+.+. ....++++++||.
T Consensus 132 ~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~~~--~~--~--~~i~~~--i~~~~~ivvlNK~ 203 (337)
T 2qm8_A 132 VAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPGAG--DE--L--QGIKKG--IFELADMIAVNKA 203 (337)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSCC------------CCTT--HHHHCSEEEEECC
T ss_pred hHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCCCc--cc--H--HHHHHH--HhccccEEEEEch
Confidence 1 1112334578999999 666433 2344445 566776532 11 0 011111 1345899999999
Q ss_pred cchh
Q 017904 198 DLIS 201 (364)
Q Consensus 198 d~~~ 201 (364)
|+..
T Consensus 204 Dl~~ 207 (337)
T 2qm8_A 204 DDGD 207 (337)
T ss_dssp STTC
T ss_pred hccC
Confidence 9643
No 49
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=95.47 E-value=0.045 Score=51.75 Aligned_cols=33 Identities=24% Similarity=0.284 Sum_probs=29.4
Q ss_pred cCCCCchHHHHHHHHHHHhCCCceEEEecCCCC
Q 017904 71 WGGNGKTPMVEFLAHCLADSEISPLILTRGYAG 103 (364)
Q Consensus 71 vGGtGKTP~v~~L~~~L~~~g~kvaIlsRGYg~ 103 (364)
.+|+||||++..|+..+..+|.+|.++.....+
T Consensus 106 ~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~ 138 (295)
T 1ls1_A 106 LQGSGKTTTAAKLALYYKGKGRRPLLVAADTQR 138 (295)
T ss_dssp CTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSC
T ss_pred CCCCCHHHHHHHHHHHHHHcCCeEEEecCCccc
Confidence 489999999999999999999999999877653
No 50
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=95.26 E-value=0.015 Score=55.59 Aligned_cols=40 Identities=25% Similarity=0.202 Sum_probs=33.5
Q ss_pred cEEEEcCcccCCCCchHHHHHHHHHHHhCCCceEEEecCCC
Q 017904 62 PVISVGNLTWGGNGKTPMVEFLAHCLADSEISPLILTRGYA 102 (364)
Q Consensus 62 PVIsVGNltvGGtGKTP~v~~L~~~L~~~g~kvaIlsRGYg 102 (364)
++|+|-+- -||+|||+++..+|..|.++|+||.+++-.-.
T Consensus 14 ~~i~v~sg-KGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~~ 53 (324)
T 3zq6_A 14 TTFVFIGG-KGGVGKTTISAATALWMARSGKKTLVISTDPA 53 (324)
T ss_dssp CEEEEEEE-STTSSHHHHHHHHHHHHHHTTCCEEEEECCSS
T ss_pred eEEEEEeC-CCCchHHHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence 45544443 49999999999999999999999999998873
No 51
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=95.22 E-value=0.014 Score=56.42 Aligned_cols=38 Identities=39% Similarity=0.316 Sum_probs=33.1
Q ss_pred cEEEEcCcccCCCCchHHHHHHHHHHHhCCCceEEEecCC
Q 017904 62 PVISVGNLTWGGNGKTPMVEFLAHCLADSEISPLILTRGY 101 (364)
Q Consensus 62 PVIsVGNltvGGtGKTP~v~~L~~~L~~~g~kvaIlsRGY 101 (364)
.++++++ -||+|||+++..+|..|.++|+||.+++=.-
T Consensus 17 ~i~~~sg--kGGvGKTt~a~~lA~~la~~g~~vllid~D~ 54 (334)
T 3iqw_A 17 RWIFVGG--KGGVGKTTTSCSLAIQLAKVRRSVLLLSTDP 54 (334)
T ss_dssp CEEEEEC--STTSSHHHHHHHHHHHHTTSSSCEEEEECCS
T ss_pred EEEEEeC--CCCccHHHHHHHHHHHHHhCCCcEEEEECCC
Confidence 4666666 4999999999999999999999999998774
No 52
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=95.02 E-value=0.019 Score=55.01 Aligned_cols=39 Identities=33% Similarity=0.304 Sum_probs=32.7
Q ss_pred cEEEEcCcccCCCCchHHHHHHHHHHHhCCCceEEEecCCC
Q 017904 62 PVISVGNLTWGGNGKTPMVEFLAHCLADSEISPLILTRGYA 102 (364)
Q Consensus 62 PVIsVGNltvGGtGKTP~v~~L~~~L~~~g~kvaIlsRGYg 102 (364)
-+++++. -||.|||+++..||..|.++|+||.+++=+-.
T Consensus 20 ~i~v~sg--kGGvGKTTva~~LA~~lA~~G~rVllvD~D~~ 58 (329)
T 2woo_A 20 KWIFVGG--KGGVGKTTTSCSLAIQMSKVRSSVLLISTDPA 58 (329)
T ss_dssp CEEEEEC--SSSSSHHHHHHHHHHHHHTSSSCEEEEECCTT
T ss_pred EEEEEeC--CCCCcHHHHHHHHHHHHHHCCCeEEEEECCCC
Confidence 3555555 49999999999999999999999999976653
No 53
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=94.67 E-value=0.029 Score=54.53 Aligned_cols=39 Identities=31% Similarity=0.308 Sum_probs=34.4
Q ss_pred CcEEEEcCcccCCCCchHHHHHHHHHHH--hCCCceEEEecCC
Q 017904 61 VPVISVGNLTWGGNGKTPMVEFLAHCLA--DSEISPLILTRGY 101 (364)
Q Consensus 61 vPVIsVGNltvGGtGKTP~v~~L~~~L~--~~g~kvaIlsRGY 101 (364)
..++++++ -||+|||+++..+|..+. ++|.||.+++=.-
T Consensus 18 ~~i~~~~g--kGGvGKTt~a~~lA~~la~~~~g~~vllid~D~ 58 (348)
T 3io3_A 18 LKWIFVGG--KGGVGKTTTSSSVAVQLALAQPNEQFLLISTDP 58 (348)
T ss_dssp CSEEEEEC--STTSSHHHHHHHHHHHHHHHCTTSCEEEEECCS
T ss_pred cEEEEEeC--CCCCcHHHHHHHHHHHHHHhcCCCeEEEEECCC
Confidence 36777777 599999999999999999 8999999998773
No 54
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=94.58 E-value=0.059 Score=46.32 Aligned_cols=36 Identities=28% Similarity=0.358 Sum_probs=28.5
Q ss_pred EEEEcCcccCCCCchHHHHHHHHHHHhCCCceEEEecCCC
Q 017904 63 VISVGNLTWGGNGKTPMVEFLAHCLADSEISPLILTRGYA 102 (364)
Q Consensus 63 VIsVGNltvGGtGKTP~v~~L~~~L~~~g~kvaIlsRGYg 102 (364)
|+..|+. ||||||++..|++.|.+.|+.+ +.+|.-+
T Consensus 3 I~l~G~~---GsGKsT~~~~L~~~l~~~g~~v-~~~~~~~ 38 (197)
T 2z0h_A 3 ITFEGID---GSGKSTQIQLLAQYLEKRGKKV-ILKREPG 38 (197)
T ss_dssp EEEECST---TSSHHHHHHHHHHHHHHCCC-E-EEEESSC
T ss_pred EEEECCC---CCCHHHHHHHHHHHHHHCCCeE-EEeeCCC
Confidence 5667765 9999999999999999999877 5566644
No 55
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=94.46 E-value=0.037 Score=52.40 Aligned_cols=121 Identities=18% Similarity=0.211 Sum_probs=63.7
Q ss_pred CCcEEEEcCcccCCCCchHHHHHHHHHHHhCCCceEEEecCCCCCchHHHHHHHhCCCCEEEeccccchhHHHhhhcC-C
Q 017904 60 PVPVISVGNLTWGGNGKTPMVEFLAHCLADSEISPLILTRGYAGGDEVRMLERHLLERPAKIGKNCINPKVGSHLKSG-K 138 (364)
Q Consensus 60 ~vPVIsVGNltvGGtGKTP~v~~L~~~L~~~g~kvaIlsRGYg~GDE~~lla~~~~~~~v~v~~~~~~~~~~~~~~~~-~ 138 (364)
+..|.+||+ .|+|||+++..|+ |.+++++++--+... . ...+. .... +
T Consensus 10 ~g~v~ivG~---~nvGKSTLin~l~------g~~~~i~s~~~~tT~----------~--~~~~~----------~~~~~~ 58 (308)
T 3iev_A 10 VGYVAIVGK---PNVGKSTLLNNLL------GTKVSIISPKAGTTR----------M--RVLGV----------KNIPNE 58 (308)
T ss_dssp EEEEEEECS---TTSSHHHHHHHHH------TSCCSCCCSSSCCCC----------S--CEEEE----------EEETTT
T ss_pred CCEEEEECC---CCCcHHHHHHHHh------CCCccccCCCCCcee----------e--EEEEE----------EecCCC
Confidence 346889997 5999999999875 345555444332110 0 01010 1112 4
Q ss_pred CCEEEEc-CCCCCcc---------------c--cCceeEEEEeCCCCCCCCccccCCCCCCchhhhccccEEEEcCCcch
Q 017904 139 IGAVILD-DGMQHWS---------------L--RRDLEIVMVNGLMPWGNRKLLPLGPLREPLMALKRADIAVVHHADLI 200 (364)
Q Consensus 139 ~dviIlD-DgfQh~~---------------L--~rdl~Ivl~Da~~~~gn~~~lPaG~LREp~~~L~rAd~ivvtk~d~~ 200 (364)
.+++++| -|+.... . .-|.=++|+|+++++......- +-+-+......-++|+||.|+.
T Consensus 59 ~~i~lvDTPG~~~~~~~~~l~~~~~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~---~~~~l~~~~~pvilV~NK~Dl~ 135 (308)
T 3iev_A 59 AQIIFLDTPGIYEPKKSDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEI---YQNFIKPLNKPVIVVINKIDKI 135 (308)
T ss_dssp EEEEEEECCCCCCCCTTCHHHHHHHHHHHHHHHHCSEEEEEEETTTBSCHHHHHH---HHHHTGGGCCCEEEEEECGGGS
T ss_pred CeEEEEECcCCCccccchhHHHHHHHHHHHHhhcCCEEEEEEeCCCCCCchhHHH---HHHHHHhcCCCEEEEEECccCC
Confidence 5788888 4543321 0 2344478899987654211100 0011112334568889999987
Q ss_pred -hhhhhHHHHHHHHh
Q 017904 201 -SEQNLKDIELEMRD 214 (364)
Q Consensus 201 -~~~~~~~i~~~l~~ 214 (364)
+.+........+..
T Consensus 136 ~~~~~~~~~~~~l~~ 150 (308)
T 3iev_A 136 GPAKNVLPLIDEIHK 150 (308)
T ss_dssp SSGGGGHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 55555444444443
No 56
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=94.14 E-value=0.037 Score=53.78 Aligned_cols=39 Identities=31% Similarity=0.281 Sum_probs=33.8
Q ss_pred cEEEEcCcccCCCCchHHHHHHHHHHH--hCCCceEEEecCCC
Q 017904 62 PVISVGNLTWGGNGKTPMVEFLAHCLA--DSEISPLILTRGYA 102 (364)
Q Consensus 62 PVIsVGNltvGGtGKTP~v~~L~~~L~--~~g~kvaIlsRGYg 102 (364)
.+++++. -||.|||+++..||..|. ++|+||.+++-.-+
T Consensus 19 ~i~v~sg--KGGvGKTTvaanLA~~lA~~~~G~rVLLvD~D~~ 59 (354)
T 2woj_A 19 KWIFVGG--KGGVGKTTSSCSIAIQMALSQPNKQFLLISTDPA 59 (354)
T ss_dssp CEEEEEE--STTSSHHHHHHHHHHHHHHHCTTSCEEEEECCSS
T ss_pred EEEEEeC--CCCCcHHHHHHHHHHHHHHhcCCCeEEEEECCCC
Confidence 4555655 499999999999999999 89999999998875
No 57
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=94.08 E-value=0.047 Score=56.21 Aligned_cols=38 Identities=26% Similarity=0.280 Sum_probs=33.2
Q ss_pred cEEEEcCcccCCCCchHHHHHHHHHHHhCCCceEEEecCC
Q 017904 62 PVISVGNLTWGGNGKTPMVEFLAHCLADSEISPLILTRGY 101 (364)
Q Consensus 62 PVIsVGNltvGGtGKTP~v~~L~~~L~~~g~kvaIlsRGY 101 (364)
.++.+++- ||+|||+++..++..+.++|+||.+|+=..
T Consensus 9 ~i~~~sgk--GGvGKTT~a~~lA~~lA~~G~rVLlvd~D~ 46 (589)
T 1ihu_A 9 PYLFFTGK--GGVGKTSISCATAIRLAEQGKRVLLVSTDP 46 (589)
T ss_dssp SEEEEECS--TTSSHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred EEEEEeCC--CcCHHHHHHHHHHHHHHHCCCcEEEEECCC
Confidence 46666654 999999999999999999999999998775
No 58
>3nrs_A Dihydrofolate:folylpolyglutamate synthetase; structural genomics, center for structural genomics of infec diseases, csgid; HET: TLA MES; 1.80A {Yersinia pestis} PDB: 3n2a_A* 3pyz_A* 3qcz_A*
Probab=93.96 E-value=0.56 Score=46.52 Aligned_cols=52 Identities=15% Similarity=0.165 Sum_probs=39.6
Q ss_pred HHHHHhHhcCCCccCCCCCcEEEEcCcccCCCCchHHHHHHHHHHHhCCCceEEEecCC
Q 017904 43 FLRHSFYRFGFFSKHRLPVPVISVGNLTWGGNGKTPMVEFLAHCLADSEISPLILTRGY 101 (364)
Q Consensus 43 ~~R~~~y~~gi~~~~~~~vPVIsVGNltvGGtGKTP~v~~L~~~L~~~g~kvaIlsRGY 101 (364)
++++.+-..|. .+...|||-|. |-.|||+++.++...|++.|+||+..+--+
T Consensus 37 r~~~ll~~lg~---p~~~~~vI~Vt----GTNGKgSt~~~l~~iL~~~G~~vg~~tSph 88 (437)
T 3nrs_A 37 RVKQVAERLDL---LKPAPKIFTVA----GTNGKGTTCCTLEAILLAAGLRVGVYSSPH 88 (437)
T ss_dssp HHHHHHHHTTC---SCSSSEEEEEE----CSSSHHHHHHHHHHHHHHTTCCEEEECCCC
T ss_pred HHHHHHHHcCC---ccccCCEEEEE----CCcChHHHHHHHHHHHHHCCCcEEEECCCC
Confidence 45555544442 23357999887 788999999999999999999999876543
No 59
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=93.94 E-value=0.058 Score=45.97 Aligned_cols=33 Identities=24% Similarity=0.335 Sum_probs=27.9
Q ss_pred EEEEcCcccCCCCchHHHHHHHHHHHhCCCceEEEe
Q 017904 63 VISVGNLTWGGNGKTPMVEFLAHCLADSEISPLILT 98 (364)
Q Consensus 63 VIsVGNltvGGtGKTP~v~~L~~~L~~~g~kvaIls 98 (364)
|+..|. -||||||++..|++.|.+.|+++..++
T Consensus 4 I~i~G~---~GsGKsT~~~~L~~~l~~~g~~~~~~~ 36 (194)
T 1nks_A 4 GIVTGI---PGVGKSTVLAKVKEILDNQGINNKIIN 36 (194)
T ss_dssp EEEEEC---TTSCHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred EEEECC---CCCCHHHHHHHHHHHHHhcCceEEEEE
Confidence 455664 499999999999999998899888884
No 60
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=93.88 E-value=0.064 Score=46.63 Aligned_cols=35 Identities=31% Similarity=0.349 Sum_probs=30.7
Q ss_pred CcEEEEcCcccCCCCchHHHHHHHHHHHhCCCceEEEe
Q 017904 61 VPVISVGNLTWGGNGKTPMVEFLAHCLADSEISPLILT 98 (364)
Q Consensus 61 vPVIsVGNltvGGtGKTP~v~~L~~~L~~~g~kvaIls 98 (364)
.+++..|. .|||||+++..++..+..+|.++..++
T Consensus 55 ~~~~l~G~---~GtGKT~la~~i~~~~~~~~~~~~~~~ 89 (202)
T 2w58_A 55 KGLYLHGS---FGVGKTYLLAAIANELAKRNVSSLIVY 89 (202)
T ss_dssp CEEEEECS---TTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CeEEEECC---CCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 68999996 699999999999999988888877664
No 61
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=93.52 E-value=1 Score=46.03 Aligned_cols=35 Identities=26% Similarity=0.394 Sum_probs=28.4
Q ss_pred EEEEcCcccCCCCchHHHHHHHHHHHhCCCceEEEecC
Q 017904 63 VISVGNLTWGGNGKTPMVEFLAHCLADSEISPLILTRG 100 (364)
Q Consensus 63 VIsVGNltvGGtGKTP~v~~L~~~L~~~g~kvaIlsRG 100 (364)
+..|| . .|+||||++..|+.++...|.+|.+....
T Consensus 296 I~LVG-p--NGSGKTTLl~~LAgll~~~~G~V~l~g~D 330 (503)
T 2yhs_A 296 ILMVG-V--NGVGKTTTIGKLARQFEQQGKSVMLAAGD 330 (503)
T ss_dssp EEEEC-C--TTSSHHHHHHHHHHHHHHTTCCEEEECCC
T ss_pred EEEEC-C--CcccHHHHHHHHHHHhhhcCCeEEEecCc
Confidence 34555 3 79999999999999999888899887443
No 62
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=93.52 E-value=0.077 Score=46.25 Aligned_cols=38 Identities=18% Similarity=0.070 Sum_probs=30.1
Q ss_pred CCcEEEEcCcccCCCCchHHHHHHHHHHHhCCCceEEEecCC
Q 017904 60 PVPVISVGNLTWGGNGKTPMVEFLAHCLADSEISPLILTRGY 101 (364)
Q Consensus 60 ~vPVIsVGNltvGGtGKTP~v~~L~~~L~~~g~kvaIlsRGY 101 (364)
+.-|+..|.. ||||||++..|++.|...|+.+. ..+.-
T Consensus 9 ~~~I~l~G~~---GsGKsT~~~~L~~~l~~~~~~v~-~~~~~ 46 (215)
T 1nn5_A 9 GALIVLEGVD---RAGKSTQSRKLVEALCAAGHRAE-LLRFP 46 (215)
T ss_dssp CCEEEEEEST---TSSHHHHHHHHHHHHHHTTCCEE-EEESS
T ss_pred CcEEEEECCC---CCCHHHHHHHHHHHHHHcCCcEE-EeeCC
Confidence 3457777765 99999999999999998899884 44543
No 63
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=93.48 E-value=0.098 Score=45.55 Aligned_cols=39 Identities=13% Similarity=0.036 Sum_probs=30.9
Q ss_pred CCcEEEEcCcccCCCCchHHHHHHHHHHHhCCCceEEEecCCC
Q 017904 60 PVPVISVGNLTWGGNGKTPMVEFLAHCLADSEISPLILTRGYA 102 (364)
Q Consensus 60 ~vPVIsVGNltvGGtGKTP~v~~L~~~L~~~g~kvaIlsRGYg 102 (364)
+.-|+..|.. ||||||+...|++.|...++.+ .+.|.-+
T Consensus 10 ~~~I~l~G~~---GsGKST~~~~L~~~l~~~~~~~-~~~~~~~ 48 (212)
T 2wwf_A 10 GKFIVFEGLD---RSGKSTQSKLLVEYLKNNNVEV-KHLYFPN 48 (212)
T ss_dssp SCEEEEEEST---TSSHHHHHHHHHHHHHHTTCCE-EEEESSC
T ss_pred CCEEEEEcCC---CCCHHHHHHHHHHHHHHcCCcE-EEEecCC
Confidence 4456677765 9999999999999999889988 5566443
No 64
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=93.37 E-value=0.022 Score=49.82 Aligned_cols=34 Identities=26% Similarity=0.284 Sum_probs=28.0
Q ss_pred EEEEcCcccCCCCchHHHHHHHHHHHhCCCceEEEec
Q 017904 63 VISVGNLTWGGNGKTPMVEFLAHCLADSEISPLILTR 99 (364)
Q Consensus 63 VIsVGNltvGGtGKTP~v~~L~~~L~~~g~kvaIlsR 99 (364)
|+++|. -||||||++..|++.|...|+++.++..
T Consensus 3 I~i~G~---~GsGKsTl~~~L~~~l~~~g~~v~~~~~ 36 (214)
T 1gtv_A 3 IAIEGV---DGAGKRTLVEKLSGAFRAAGRSVATLAF 36 (214)
T ss_dssp EEEEEE---EEEEHHHHHHHHHHHHHEEEEEEEEEES
T ss_pred EEEEcC---CCCCHHHHHHHHHHHHHhcCCeEEEEee
Confidence 455664 3999999999999999988888887754
No 65
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=93.36 E-value=0.07 Score=45.59 Aligned_cols=35 Identities=26% Similarity=0.151 Sum_probs=27.2
Q ss_pred EEEEcCcccCCCCchHHHHHHHHHHHhCCCceEEEecCC
Q 017904 63 VISVGNLTWGGNGKTPMVEFLAHCLADSEISPLILTRGY 101 (364)
Q Consensus 63 VIsVGNltvGGtGKTP~v~~L~~~L~~~g~kvaIlsRGY 101 (364)
|+..|+. ||||||++..|++.|.+.|+.+ +-++.-
T Consensus 3 I~l~G~~---GsGKsT~~~~L~~~l~~~g~~~-i~~d~~ 37 (195)
T 2pbr_A 3 IAFEGID---GSGKTTQAKKLYEYLKQKGYFV-SLYREP 37 (195)
T ss_dssp EEEECST---TSCHHHHHHHHHHHHHHTTCCE-EEEESS
T ss_pred EEEECCC---CCCHHHHHHHHHHHHHHCCCeE-EEEeCC
Confidence 5566765 9999999999999998888765 444543
No 66
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}
Probab=93.27 E-value=0.037 Score=54.44 Aligned_cols=35 Identities=17% Similarity=0.119 Sum_probs=30.7
Q ss_pred EEEEcCcccCCCCchHHHHHHHHHHHhCCCceEEEec
Q 017904 63 VISVGNLTWGGNGKTPMVEFLAHCLADSEISPLILTR 99 (364)
Q Consensus 63 VIsVGNltvGGtGKTP~v~~L~~~L~~~g~kvaIlsR 99 (364)
++.+++ -||+|||+++..++..+.++|+||.+++=
T Consensus 4 i~~~~g--kGG~GKTt~a~~la~~la~~g~~vllvd~ 38 (374)
T 3igf_A 4 ILTFLG--KSGVARTKIAIAAAKLLASQGKRVLLAGL 38 (374)
T ss_dssp EEEEEC--SBHHHHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EEEEeC--CCCCcHHHHHHHHHHHHHHCCCCeEEEeC
Confidence 455555 49999999999999999999999999986
No 67
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=93.17 E-value=0.13 Score=44.27 Aligned_cols=33 Identities=33% Similarity=0.388 Sum_probs=27.3
Q ss_pred EEEEcCcccCCCCchHHHHHHHHHHHhCCCceEEEe
Q 017904 63 VISVGNLTWGGNGKTPMVEFLAHCLADSEISPLILT 98 (364)
Q Consensus 63 VIsVGNltvGGtGKTP~v~~L~~~L~~~g~kvaIls 98 (364)
|+.+| . .||||||+...|++.|...|.++.++.
T Consensus 16 i~l~G-~--~GsGKsT~~~~L~~~l~~~~~~~~~~~ 48 (186)
T 2yvu_A 16 VWLTG-L--PGSGKTTIATRLADLLQKEGYRVEVLD 48 (186)
T ss_dssp EEEEC-C--TTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEc-C--CCCCHHHHHHHHHHHHHhcCCeEEEee
Confidence 44555 4 699999999999999999898887773
No 68
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=92.82 E-value=0.39 Score=43.08 Aligned_cols=34 Identities=18% Similarity=0.071 Sum_probs=28.3
Q ss_pred cEEEEcCcccCCCCchHHHHHHHHHHHhCCCceEEEe
Q 017904 62 PVISVGNLTWGGNGKTPMVEFLAHCLADSEISPLILT 98 (364)
Q Consensus 62 PVIsVGNltvGGtGKTP~v~~L~~~L~~~g~kvaIls 98 (364)
-|++.++ -|.|||+.+.-++-....+|+||.++.
T Consensus 30 ~i~v~tG---~GkGKTTaA~GlalRA~g~G~rV~~vQ 63 (196)
T 1g5t_A 30 IIIVFTG---NGKGKTTAAFGTAARAVGHGKNVGVVQ 63 (196)
T ss_dssp CEEEEES---SSSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEECC---CCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 3555554 379999999999999999999999994
No 69
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=92.74 E-value=0.19 Score=46.05 Aligned_cols=39 Identities=23% Similarity=0.365 Sum_probs=32.0
Q ss_pred CcEEEEcCcccCCCCchHHHHHHHHHHHhCCCceEEEecCCC
Q 017904 61 VPVISVGNLTWGGNGKTPMVEFLAHCLADSEISPLILTRGYA 102 (364)
Q Consensus 61 vPVIsVGNltvGGtGKTP~v~~L~~~L~~~g~kvaIlsRGYg 102 (364)
.-|+..| + -|+||||.+..|+++|...|+++++++|.=+
T Consensus 28 ~~i~~eG-~--~GsGKsT~~~~l~~~l~~~~~~~~~~~rep~ 66 (236)
T 3lv8_A 28 KFIVIEG-L--EGAGKSTAIQVVVETLQQNGIDHITRTREPG 66 (236)
T ss_dssp CEEEEEE-S--TTSCHHHHHHHHHHHHHHTTCCCEEEEESSC
T ss_pred eEEEEEC-C--CCCCHHHHHHHHHHHHHhcCCCeeeeecCCC
Confidence 3455555 4 5999999999999999999999788888765
No 70
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=92.64 E-value=0.12 Score=47.43 Aligned_cols=35 Identities=29% Similarity=0.424 Sum_probs=27.9
Q ss_pred cEEEEcCcccCCCCchHHHHHHHHHHHhCCCceEEEe
Q 017904 62 PVISVGNLTWGGNGKTPMVEFLAHCLADSEISPLILT 98 (364)
Q Consensus 62 PVIsVGNltvGGtGKTP~v~~L~~~L~~~g~kvaIls 98 (364)
++|++-++ -|||||++...|++.|.+.|+.+.+++
T Consensus 5 ~lIvl~G~--pGSGKSTla~~La~~L~~~g~~~i~~~ 39 (260)
T 3a4m_A 5 MLIILTGL--PGVGKSTFSKNLAKILSKNNIDVIVLG 39 (260)
T ss_dssp EEEEEECC--TTSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred EEEEEEcC--CCCCHHHHHHHHHHHHHhCCCEEEEEC
Confidence 45555555 799999999999999988898776664
No 71
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=92.44 E-value=0.13 Score=45.65 Aligned_cols=36 Identities=28% Similarity=0.455 Sum_probs=27.7
Q ss_pred EEEcCcccCCCCchHHHHHHHHHHHhCCCceEEEecCCC
Q 017904 64 ISVGNLTWGGNGKTPMVEFLAHCLADSEISPLILTRGYA 102 (364)
Q Consensus 64 IsVGNltvGGtGKTP~v~~L~~~L~~~g~kvaIlsRGYg 102 (364)
|++=++ -||||||.+..|+++|.++|++| +++|.=|
T Consensus 3 I~~EG~--DGsGKsTq~~~L~~~L~~~g~~v-~~treP~ 38 (197)
T 3hjn_A 3 ITFEGI--DGSGKSTQIQLLAQYLEKRGKKV-ILKREPG 38 (197)
T ss_dssp EEEECS--TTSSHHHHHHHHHHHHHHTTCCE-EEEESSC
T ss_pred EEEECC--CCCCHHHHHHHHHHHHHHCCCcE-EEEECCC
Confidence 444344 59999999999999999999876 4555443
No 72
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=92.33 E-value=0.13 Score=46.85 Aligned_cols=36 Identities=19% Similarity=0.112 Sum_probs=30.6
Q ss_pred cEEEEcCcccCCCCchHHHHHHHHHHHhCCCceEEEe
Q 017904 62 PVISVGNLTWGGNGKTPMVEFLAHCLADSEISPLILT 98 (364)
Q Consensus 62 PVIsVGNltvGGtGKTP~v~~L~~~L~~~g~kvaIls 98 (364)
+.|.|.+-. .|+|||.++..|++.|+++|++|+...
T Consensus 5 k~i~Itgt~-t~vGKT~vt~~L~~~l~~~G~~V~~~K 40 (228)
T 3of5_A 5 KKFFIIGTD-TEVGKTYISTKLIEVCEHQNIKSLCLK 40 (228)
T ss_dssp EEEEEEESS-SSSCHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred cEEEEEeCC-CCCCHHHHHHHHHHHHHHCCCeeEEec
Confidence 556666553 799999999999999999999999975
No 73
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A
Probab=92.14 E-value=0.13 Score=47.35 Aligned_cols=37 Identities=16% Similarity=0.271 Sum_probs=32.2
Q ss_pred CcEEEEcCcccCCCCchHHHHHHHHHHHhCCCceEEEe
Q 017904 61 VPVISVGNLTWGGNGKTPMVEFLAHCLADSEISPLILT 98 (364)
Q Consensus 61 vPVIsVGNltvGGtGKTP~v~~L~~~L~~~g~kvaIls 98 (364)
.+.|.|.... .|+|||.++..|++.|+++|++|+...
T Consensus 21 ~k~i~ItgT~-t~vGKT~vs~gL~~~L~~~G~~V~~fK 57 (242)
T 3qxc_A 21 GHMLFISATN-TNAGKTTCARLLAQYCNACGVKTILLK 57 (242)
T ss_dssp CEEEEEEESS-TTSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred CcEEEEEeCC-CCCcHHHHHHHHHHHHHhCCCceEEEe
Confidence 4777776654 899999999999999999999999985
No 74
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*
Probab=91.67 E-value=0.17 Score=46.91 Aligned_cols=37 Identities=22% Similarity=0.266 Sum_probs=32.1
Q ss_pred CcEEEEcCcccCCCCchHHHHHHHHHHHhCCCceEEEe
Q 017904 61 VPVISVGNLTWGGNGKTPMVEFLAHCLADSEISPLILT 98 (364)
Q Consensus 61 vPVIsVGNltvGGtGKTP~v~~L~~~L~~~g~kvaIls 98 (364)
.+.|.|.... .|+|||.++..|++.|+++|++|+...
T Consensus 26 m~~i~Itgt~-t~vGKT~vt~gL~~~l~~~G~~V~~fK 62 (251)
T 3fgn_A 26 MTILVVTGTG-TGVGKTVVCAALASAARQAGIDVAVCK 62 (251)
T ss_dssp CEEEEEEESS-TTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCEEEEEeCC-CCCcHHHHHHHHHHHHHHCCCeEEEEe
Confidence 4677776653 799999999999999999999999986
No 75
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=91.63 E-value=0.21 Score=43.71 Aligned_cols=36 Identities=11% Similarity=0.119 Sum_probs=30.5
Q ss_pred CCcEEEEcCcccCCCCchHHHHHHHHHHHhCCCceEEEe
Q 017904 60 PVPVISVGNLTWGGNGKTPMVEFLAHCLADSEISPLILT 98 (364)
Q Consensus 60 ~vPVIsVGNltvGGtGKTP~v~~L~~~L~~~g~kvaIls 98 (364)
+.+++..|. -|||||+++..+++.+...|.++..++
T Consensus 52 ~~~~ll~G~---~G~GKT~la~~l~~~~~~~~~~~~~~~ 87 (242)
T 3bos_A 52 VQAIYLWGP---VKSGRTHLIHAACARANELERRSFYIP 87 (242)
T ss_dssp CSEEEEECS---TTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCeEEEECC---CCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 458899996 599999999999999988887776664
No 76
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=91.42 E-value=0.17 Score=45.53 Aligned_cols=37 Identities=32% Similarity=0.355 Sum_probs=29.3
Q ss_pred cEEEEcCcccCCCCchHHHHHHHHHHHhCCCceEEEecCCC
Q 017904 62 PVISVGNLTWGGNGKTPMVEFLAHCLADSEISPLILTRGYA 102 (364)
Q Consensus 62 PVIsVGNltvGGtGKTP~v~~L~~~L~~~g~kvaIlsRGYg 102 (364)
-|+.-|. -|+||||.+..|+++|.++|+++ +++|.=+
T Consensus 8 ~i~~eG~---~gsGKsT~~~~l~~~l~~~~~~v-~~~~~p~ 44 (213)
T 4edh_A 8 FVTLEGP---EGAGKSTNRDYLAERLRERGIEV-QLTREPG 44 (213)
T ss_dssp EEEEECS---TTSSHHHHHHHHHHHHHTTTCCE-EEEESSC
T ss_pred EEEEEcC---CCCCHHHHHHHHHHHHHHcCCCc-ccccCCC
Confidence 3445554 59999999999999999999988 5667644
No 77
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=91.13 E-value=0.23 Score=42.16 Aligned_cols=33 Identities=18% Similarity=0.324 Sum_probs=25.9
Q ss_pred EEEEcCcccCCCCchHHHHHHHHHHHhCCCceEEEe
Q 017904 63 VISVGNLTWGGNGKTPMVEFLAHCLADSEISPLILT 98 (364)
Q Consensus 63 VIsVGNltvGGtGKTP~v~~L~~~L~~~g~kvaIls 98 (364)
|+..| . -||||||+...|++.|.++|++..+++
T Consensus 6 I~i~G-~--~GsGKsT~~~~L~~~l~~~g~~~~~i~ 38 (192)
T 1kht_A 6 VVVTG-V--PGVGSTTSSQLAMDNLRKEGVNYKMVS 38 (192)
T ss_dssp EEEEC-C--TTSCHHHHHHHHHHHHHTTTCCCEEEE
T ss_pred EEEEC-C--CCCCHHHHHHHHHHHHHhcCcceEEEe
Confidence 44555 4 599999999999999988886666665
No 78
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=91.01 E-value=0.24 Score=43.89 Aligned_cols=34 Identities=12% Similarity=0.028 Sum_probs=29.9
Q ss_pred cEEEEcCcccCCCCchHHHHHHHHHHHhCCCceEEEe
Q 017904 62 PVISVGNLTWGGNGKTPMVEFLAHCLADSEISPLILT 98 (364)
Q Consensus 62 PVIsVGNltvGGtGKTP~v~~L~~~L~~~g~kvaIls 98 (364)
=.+..|+- |+|||+.+..++..+..+|.+|.++.
T Consensus 10 i~v~~G~m---gsGKTT~ll~~a~r~~~~g~kV~v~k 43 (191)
T 1xx6_A 10 VEVIVGPM---YSGKSEELIRRIRRAKIAKQKIQVFK 43 (191)
T ss_dssp EEEEECST---TSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCC---CCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 35567865 99999999999999999999999996
No 79
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=90.75 E-value=0.26 Score=46.68 Aligned_cols=36 Identities=25% Similarity=0.408 Sum_probs=31.7
Q ss_pred CCcEEEEcCcccCCCCchHHHHHHHHHHH-hCCCceEEEe
Q 017904 60 PVPVISVGNLTWGGNGKTPMVEFLAHCLA-DSEISPLILT 98 (364)
Q Consensus 60 ~vPVIsVGNltvGGtGKTP~v~~L~~~L~-~~g~kvaIls 98 (364)
+.+++..|.- |||||.++..++..+. ++|+++..++
T Consensus 152 ~~~lll~G~~---GtGKT~La~aia~~~~~~~g~~v~~~~ 188 (308)
T 2qgz_A 152 QKGLYLYGDM---GIGKSYLLAAMAHELSEKKGVSTTLLH 188 (308)
T ss_dssp CCEEEEECST---TSSHHHHHHHHHHHHHHHSCCCEEEEE
T ss_pred CceEEEECCC---CCCHHHHHHHHHHHHHHhcCCcEEEEE
Confidence 4689999985 9999999999999998 8898887764
No 80
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=90.73 E-value=0.26 Score=41.99 Aligned_cols=33 Identities=30% Similarity=0.275 Sum_probs=26.0
Q ss_pred cEEEEcCcccCCCCchHHHHHHHHHHHhCCCceEEE
Q 017904 62 PVISVGNLTWGGNGKTPMVEFLAHCLADSEISPLIL 97 (364)
Q Consensus 62 PVIsVGNltvGGtGKTP~v~~L~~~L~~~g~kvaIl 97 (364)
.|+.+|. -||||||+...|++.|...|+.+..+
T Consensus 7 ~i~l~G~---~GsGKST~~~~L~~~l~~~g~~~i~~ 39 (179)
T 2pez_A 7 TVWLTGL---SGAGKTTVSMALEEYLVCHGIPCYTL 39 (179)
T ss_dssp EEEEECC---TTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEECC---CCCCHHHHHHHHHHHHhhCCCcEEEE
Confidence 4556665 49999999999999998888766544
No 81
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=90.60 E-value=0.28 Score=44.20 Aligned_cols=38 Identities=26% Similarity=0.382 Sum_probs=30.2
Q ss_pred EEEEcCcccCCCCchHHHHHHHHHHHhCCCceEEEecCCC
Q 017904 63 VISVGNLTWGGNGKTPMVEFLAHCLADSEISPLILTRGYA 102 (364)
Q Consensus 63 VIsVGNltvGGtGKTP~v~~L~~~L~~~g~kvaIlsRGYg 102 (364)
.|++=++ -|+||||.+..|+++|.++|++.++++|.=|
T Consensus 5 ~i~~eG~--~gsGKsT~~~~l~~~l~~~~~~~v~~~rep~ 42 (213)
T 4tmk_A 5 YIVIEGL--EGAGKTTARNVVVETLEQLGIRDMVFTREPG 42 (213)
T ss_dssp EEEEEEC--TTSCHHHHHHHHHHHHHHTTCCCEEEEESSC
T ss_pred EEEEECC--CCCCHHHHHHHHHHHHHHcCCCcceeeeCCC
Confidence 3444444 6999999999999999999985568888754
No 82
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=90.48 E-value=0.29 Score=41.21 Aligned_cols=34 Identities=12% Similarity=0.174 Sum_probs=27.4
Q ss_pred CcEEEEcCcccCCCCchHHHHHHHHHHHhCCCceEEE
Q 017904 61 VPVISVGNLTWGGNGKTPMVEFLAHCLADSEISPLIL 97 (364)
Q Consensus 61 vPVIsVGNltvGGtGKTP~v~~L~~~L~~~g~kvaIl 97 (364)
-++..+|. -|||||+++..++..+...|.++..+
T Consensus 37 ~~~~l~G~---~G~GKTtL~~~i~~~~~~~g~~~~~~ 70 (149)
T 2kjq_A 37 QFIYVWGE---EGAGKSHLLQAWVAQALEAGKNAAYI 70 (149)
T ss_dssp SEEEEESS---STTTTCHHHHHHHHHHHTTTCCEEEE
T ss_pred CEEEEECC---CCCCHHHHHHHHHHHHHhcCCcEEEE
Confidence 46778886 49999999999999998777655444
No 83
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=90.43 E-value=0.17 Score=43.75 Aligned_cols=33 Identities=15% Similarity=0.068 Sum_probs=25.0
Q ss_pred CCcEEEEcCcccCCCCchHHHHHHHHHHHhCCCceEEE
Q 017904 60 PVPVISVGNLTWGGNGKTPMVEFLAHCLADSEISPLIL 97 (364)
Q Consensus 60 ~vPVIsVGNltvGGtGKTP~v~~L~~~L~~~g~kvaIl 97 (364)
+..|+..|+. ||||||++..|++.| .|+++..+
T Consensus 4 ~~~I~l~G~~---GsGKsT~~~~L~~~l--~g~~~~~~ 36 (204)
T 2v54_A 4 GALIVFEGLD---KSGKTTQCMNIMESI--PANTIKYL 36 (204)
T ss_dssp CCEEEEECCT---TSSHHHHHHHHHHTS--CGGGEEEE
T ss_pred CcEEEEEcCC---CCCHHHHHHHHHHHH--CCCceEEE
Confidence 3457778875 999999999999988 36665443
No 84
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=90.43 E-value=0.28 Score=42.97 Aligned_cols=35 Identities=26% Similarity=0.433 Sum_probs=27.4
Q ss_pred EEEEcCcccCCCCchHHHHHHHHHHHhCCCceEEEec
Q 017904 63 VISVGNLTWGGNGKTPMVEFLAHCLADSEISPLILTR 99 (364)
Q Consensus 63 VIsVGNltvGGtGKTP~v~~L~~~L~~~g~kvaIlsR 99 (364)
+|.|.+- .|+||||++..|+..+...|.++.+++.
T Consensus 24 ~i~i~G~--~GsGKstl~~~l~~~~~~~~~~v~~~~~ 58 (201)
T 1rz3_A 24 VLGIDGL--SRSGKTTLANQLSQTLREQGISVCVFHM 58 (201)
T ss_dssp EEEEEEC--TTSSHHHHHHHHHHHHHHTTCCEEEEEG
T ss_pred EEEEECC--CCCCHHHHHHHHHHHHhhcCCeEEEecc
Confidence 4444333 5999999999999999888888887743
No 85
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=90.40 E-value=0.25 Score=49.17 Aligned_cols=36 Identities=19% Similarity=0.337 Sum_probs=30.3
Q ss_pred cEEEEcCcccCCCCchHHHHHHHHHHHhCCC-ceEEEecC
Q 017904 62 PVISVGNLTWGGNGKTPMVEFLAHCLADSEI-SPLILTRG 100 (364)
Q Consensus 62 PVIsVGNltvGGtGKTP~v~~L~~~L~~~g~-kvaIlsRG 100 (364)
++++.|. .|||||+++..++++|.+.|. ++.+++--
T Consensus 47 ~~li~G~---aGTGKT~ll~~~~~~l~~~~~~~il~~a~T 83 (459)
T 3upu_A 47 HVTINGP---AGTGATTLTKFIIEALISTGETGIILAAPT 83 (459)
T ss_dssp EEEEECC---TTSCHHHHHHHHHHHHHHTTCCCEEEEESS
T ss_pred EEEEEeC---CCCCHHHHHHHHHHHHHhcCCceEEEecCc
Confidence 7888885 799999999999999999887 66666543
No 86
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=90.32 E-value=0.25 Score=50.81 Aligned_cols=37 Identities=32% Similarity=0.317 Sum_probs=31.4
Q ss_pred EEEEcCcccCCCCchHHHHHHHHHHHhCCCceEEEecCC
Q 017904 63 VISVGNLTWGGNGKTPMVEFLAHCLADSEISPLILTRGY 101 (364)
Q Consensus 63 VIsVGNltvGGtGKTP~v~~L~~~L~~~g~kvaIlsRGY 101 (364)
++.++.- ||+|||+++..++..|.++|.+|.+++-+-
T Consensus 329 ~~~~~~~--~g~Gktt~a~~lA~~l~~~g~~vllvD~Dp 365 (589)
T 1ihu_A 329 LIMLMGK--GGVGKTTMAAAIAVRLADMGFDVHLTTSDP 365 (589)
T ss_dssp EEEEECS--TTSSHHHHHHHHHHHHHHTTCCEEEEESCC
T ss_pred EEEEecC--CCCChhhHHHHHHHHHHHCCCcEEEEeCCC
Confidence 4455554 999999999999999999999999996653
No 87
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=90.32 E-value=0.21 Score=42.55 Aligned_cols=36 Identities=19% Similarity=0.199 Sum_probs=29.0
Q ss_pred CCcEEEEcCcccCCCCchHHHHHHHHHHH-hCCCceEEEe
Q 017904 60 PVPVISVGNLTWGGNGKTPMVEFLAHCLA-DSEISPLILT 98 (364)
Q Consensus 60 ~vPVIsVGNltvGGtGKTP~v~~L~~~L~-~~g~kvaIls 98 (364)
+-.++.+|. -|||||+++..++..+. .+|.++..++
T Consensus 38 g~~~~l~G~---~G~GKTtL~~~i~~~~~~~~g~~~~~~~ 74 (180)
T 3ec2_A 38 GKGLTFVGS---PGVGKTHLAVATLKAIYEKKGIRGYFFD 74 (180)
T ss_dssp CCEEEECCS---SSSSHHHHHHHHHHHHHHHSCCCCCEEE
T ss_pred CCEEEEECC---CCCCHHHHHHHHHHHHHHHcCCeEEEEE
Confidence 346788885 59999999999999997 7787776653
No 88
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=90.26 E-value=1.1 Score=44.50 Aligned_cols=24 Identities=21% Similarity=0.324 Sum_probs=19.7
Q ss_pred CCcEEEEcCcccCCCCchHHHHHHHHH
Q 017904 60 PVPVISVGNLTWGGNGKTPMVEFLAHC 86 (364)
Q Consensus 60 ~vPVIsVGNltvGGtGKTP~v~~L~~~ 86 (364)
.+-|+.||.. ++|||+++..|+..
T Consensus 17 ~~~i~iiG~~---d~GKSTL~~~Ll~~ 40 (439)
T 3j2k_7 17 HVNVVFIGHV---DAGKSTIGGQIMYL 40 (439)
T ss_pred eeEEEEEeCC---CCCHHHHHHHHHHH
Confidence 4578999986 99999999988544
No 89
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=89.91 E-value=1.4 Score=40.93 Aligned_cols=36 Identities=22% Similarity=0.452 Sum_probs=27.5
Q ss_pred CCCCCcEEEEcCcccCCCCchHHHHHHHHHHHhCCCceEEEe
Q 017904 57 HRLPVPVISVGNLTWGGNGKTPMVEFLAHCLADSEISPLILT 98 (364)
Q Consensus 57 ~~~~vPVIsVGNltvGGtGKTP~v~~L~~~L~~~g~kvaIls 98 (364)
.+.|.-++..|- -|||||.++.++++.+ |.++..++
T Consensus 33 ~~~p~~lLl~Gp---pGtGKT~la~aiA~~l---~~~~i~v~ 68 (293)
T 3t15_A 33 IKVPLILGIWGG---KGQGKSFQCELVFRKM---GINPIMMS 68 (293)
T ss_dssp CCCCSEEEEEEC---TTSCHHHHHHHHHHHH---TCCCEEEE
T ss_pred CCCCeEEEEECC---CCCCHHHHHHHHHHHh---CCCEEEEe
Confidence 344445667785 6999999999999999 66766665
No 90
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=89.89 E-value=0.25 Score=44.98 Aligned_cols=38 Identities=29% Similarity=0.489 Sum_probs=31.5
Q ss_pred EEEEcCcccCCCCchHHHHHHHHHHHh-CCCceEEEecCCC
Q 017904 63 VISVGNLTWGGNGKTPMVEFLAHCLAD-SEISPLILTRGYA 102 (364)
Q Consensus 63 VIsVGNltvGGtGKTP~v~~L~~~L~~-~g~kvaIlsRGYg 102 (364)
+|++-++ -|+||||++..|++.|.. +|+++.+++|.=+
T Consensus 23 ~i~~~G~--~g~GKst~~~~l~~~l~~~~g~~v~~~treP~ 61 (223)
T 3ld9_A 23 FITFEGI--DGSGKTTQSHLLAEYLSEIYGVNNVVLTREPG 61 (223)
T ss_dssp EEEEECS--TTSSHHHHHHHHHHHHHHHHCGGGEEEEESSC
T ss_pred EEEEECC--CCCCHHHHHHHHHHHHhhccCceeeEeeeCCC
Confidence 4544444 599999999999999999 9999988788765
No 91
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=89.88 E-value=0.88 Score=43.62 Aligned_cols=71 Identities=24% Similarity=0.365 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhcCCCccCCCCCc-EEEEcCcccCCCCchHHHHHHHHHHHh--CCCceEEEec-CC
Q 017904 27 LIPLLSLASSLYGISLFLRHSFYRFGFFSKHRLPVP-VISVGNLTWGGNGKTPMVEFLAHCLAD--SEISPLILTR-GY 101 (364)
Q Consensus 27 L~~lL~plS~lY~~~~~~R~~~y~~gi~~~~~~~vP-VIsVGNltvGGtGKTP~v~~L~~~L~~--~g~kvaIlsR-GY 101 (364)
-.|+..-++..|+-...++...-+ +++......| ||.|.+- -|+||||++..|...+.. .+.++++++- ||
T Consensus 59 y~pl~rll~~~~~~~~~l~~~~~~--~l~~~~~~~p~iigI~Gp--sGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f 133 (321)
T 3tqc_A 59 YLPLSRLLSFYVTARQTLQQATYQ--FLGKPEPKVPYIIGIAGS--VAVGKSTTSRVLKALLSRWPDHPNVEVITTDGF 133 (321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH--HHTCCCCCCCEEEEEECC--TTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGG
T ss_pred HHHHHHHHHHhhcchHHHHHHHHH--HhccCCCCCCEEEEEECC--CCCCHHHHHHHHHHHhcccCCCCeEEEEeeccc
Confidence 456666666777766665543322 1222212223 5655554 599999999999998863 2457888865 44
No 92
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=89.74 E-value=0.34 Score=42.27 Aligned_cols=35 Identities=11% Similarity=0.098 Sum_probs=28.7
Q ss_pred EEEEcCcccCCCCchHHHHHHHHHHHhCCCceEEEecC
Q 017904 63 VISVGNLTWGGNGKTPMVEFLAHCLADSEISPLILTRG 100 (364)
Q Consensus 63 VIsVGNltvGGtGKTP~v~~L~~~L~~~g~kvaIlsRG 100 (364)
++..|+- |+|||+++..++..+..+|.++.+++..
T Consensus 6 ~vi~G~~---gsGKTT~ll~~~~~~~~~g~~v~~~~~~ 40 (184)
T 2orw_A 6 TVITGPM---YSGKTTELLSFVEIYKLGKKKVAVFKPK 40 (184)
T ss_dssp EEEEEST---TSSHHHHHHHHHHHHHHTTCEEEEEEEC
T ss_pred EEEECCC---CCCHHHHHHHHHHHHHHCCCeEEEEeec
Confidence 4466753 9999999999999888889999988654
No 93
>1w78_A FOLC bifunctional protein; DHFS, dihydrofolate synthase, synthase, ATP-binding, folate biosynthesis, ligase, multifunctional enzyme; HET: KCX PD8 ADP; 1.82A {Escherichia coli} PDB: 1w7k_A*
Probab=89.72 E-value=0.33 Score=47.77 Aligned_cols=38 Identities=21% Similarity=0.177 Sum_probs=33.1
Q ss_pred CCcEEEEcCcccCCCCchHHHHHHHHHHHhCCCceEEEecCC
Q 017904 60 PVPVISVGNLTWGGNGKTPMVEFLAHCLADSEISPLILTRGY 101 (364)
Q Consensus 60 ~vPVIsVGNltvGGtGKTP~v~~L~~~L~~~g~kvaIlsRGY 101 (364)
..|||.|. |-.|||+++.+++..|++.|++|++.+-++
T Consensus 48 ~~~vI~VT----GTnGKtTT~~~l~~iL~~~G~~~g~~~s~~ 85 (422)
T 1w78_A 48 APFVFTVA----GTNGKGTTCRTLESILMAAGYKVGVYSSPH 85 (422)
T ss_dssp SSEEEEEE----CSSCHHHHHHHHHHHHHHTTCCEEEECCSC
T ss_pred CCcEEEEe----CCcChHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 46899887 788999999999999999999999876553
No 94
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=89.55 E-value=0.38 Score=39.98 Aligned_cols=27 Identities=33% Similarity=0.438 Sum_probs=23.6
Q ss_pred CCcEEEEcCcccCCCCchHHHHHHHHHHHh
Q 017904 60 PVPVISVGNLTWGGNGKTPMVEFLAHCLAD 89 (364)
Q Consensus 60 ~vPVIsVGNltvGGtGKTP~v~~L~~~L~~ 89 (364)
+.+++.+|. .|||||.++..+++.+..
T Consensus 43 ~~~~ll~G~---~G~GKT~l~~~~~~~~~~ 69 (195)
T 1jbk_A 43 KNNPVLIGE---PGVGKTAIVEGLAQRIIN 69 (195)
T ss_dssp SCEEEEECC---TTSCHHHHHHHHHHHHHH
T ss_pred CCceEEECC---CCCCHHHHHHHHHHHHHh
Confidence 457889996 699999999999999976
No 95
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=89.48 E-value=0.38 Score=41.49 Aligned_cols=33 Identities=21% Similarity=0.270 Sum_probs=24.7
Q ss_pred cEEEEcCcccCCCCchHHHHHHHHHHHhCCCceEEEec
Q 017904 62 PVISVGNLTWGGNGKTPMVEFLAHCLADSEISPLILTR 99 (364)
Q Consensus 62 PVIsVGNltvGGtGKTP~v~~L~~~L~~~g~kvaIlsR 99 (364)
-|+..|. -||||||++..|++.|...| ++ +.++
T Consensus 6 ~I~i~G~---~GsGKsT~~~~L~~~l~~~g-~~-~~~~ 38 (213)
T 2plr_A 6 LIAFEGI---DGSGKSSQATLLKDWIELKR-DV-YLTE 38 (213)
T ss_dssp EEEEECC---TTSSHHHHHHHHHHHHTTTS-CE-EEEE
T ss_pred EEEEEcC---CCCCHHHHHHHHHHHHhhcC-CE-EEec
Confidence 3556665 49999999999999997777 54 4333
No 96
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=89.44 E-value=0.32 Score=50.25 Aligned_cols=36 Identities=17% Similarity=0.192 Sum_probs=30.7
Q ss_pred cEEEEcCcccCCCCchHHHHHHHHHHHhCCCceEEEecC
Q 017904 62 PVISVGNLTWGGNGKTPMVEFLAHCLADSEISPLILTRG 100 (364)
Q Consensus 62 PVIsVGNltvGGtGKTP~v~~L~~~L~~~g~kvaIlsRG 100 (364)
.+++.|. .|||||+++..+++.+.++|.+|.+++--
T Consensus 206 ~~~I~G~---pGTGKTt~i~~l~~~l~~~g~~Vl~~ApT 241 (574)
T 3e1s_A 206 LVVLTGG---PGTGKSTTTKAVADLAESLGLEVGLCAPT 241 (574)
T ss_dssp EEEEECC---TTSCHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred EEEEEcC---CCCCHHHHHHHHHHHHHhcCCeEEEecCc
Confidence 4666674 79999999999999999999999988653
No 97
>1jbw_A Folylpolyglutamate synthase; FPGS folate AMPPCP ternary complex, ligase; HET: KCX ACQ TMF; 1.85A {Lactobacillus casei} SCOP: c.59.1.2 c.72.2.2 PDB: 1fgs_A* 1jbv_A* 2gca_A 2gc5_A* 2gc6_A* 2gcb_A
Probab=89.41 E-value=0.37 Score=47.57 Aligned_cols=38 Identities=29% Similarity=0.352 Sum_probs=33.4
Q ss_pred CCcEEEEcCcccCCCCchHHHHHHHHHHHhCCCceEEEecCC
Q 017904 60 PVPVISVGNLTWGGNGKTPMVEFLAHCLADSEISPLILTRGY 101 (364)
Q Consensus 60 ~vPVIsVGNltvGGtGKTP~v~~L~~~L~~~g~kvaIlsRGY 101 (364)
..|||.|. |-.|||+++.+++..|++.|++++..+..+
T Consensus 38 ~~~vI~Vt----GTnGKtTT~~~l~~iL~~~G~~vg~~~sp~ 75 (428)
T 1jbw_A 38 QGRYIHVT----GTNGKGSAANAIAHVLEASGLTVGLYTSPF 75 (428)
T ss_dssp SSCEEEEE----CSSCHHHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred cCcEEEEE----CCCChHHHHHHHHHHHHHCCCCEEEEeCCc
Confidence 45899887 788999999999999999999999887643
No 98
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=89.33 E-value=0.4 Score=43.63 Aligned_cols=36 Identities=19% Similarity=0.176 Sum_probs=29.3
Q ss_pred EEEEcCcccCCCCchHHHHHHHHHHHhCCCceEEEecCC
Q 017904 63 VISVGNLTWGGNGKTPMVEFLAHCLADSEISPLILTRGY 101 (364)
Q Consensus 63 VIsVGNltvGGtGKTP~v~~L~~~L~~~g~kvaIlsRGY 101 (364)
++..|+- |+|||+.+..++..+..+|.+|.+++-..
T Consensus 15 ~litG~m---GsGKTT~ll~~~~r~~~~g~kVli~~~~~ 50 (223)
T 2b8t_A 15 EFITGPM---FAGKTAELIRRLHRLEYADVKYLVFKPKI 50 (223)
T ss_dssp EEEECST---TSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred EEEECCC---CCcHHHHHHHHHHHHHhcCCEEEEEEecc
Confidence 4455654 99999999999999999999999995433
No 99
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=89.32 E-value=1.5 Score=42.62 Aligned_cols=40 Identities=18% Similarity=0.096 Sum_probs=31.3
Q ss_pred CCCCchHHHHHHHHHHHhCCCceEEEecCCCCCchHHHHHHHh
Q 017904 72 GGNGKTPMVEFLAHCLADSEISPLILTRGYAGGDEVRMLERHL 114 (364)
Q Consensus 72 GGtGKTP~v~~L~~~L~~~g~kvaIlsRGYg~GDE~~lla~~~ 114 (364)
-|+|||+++..++..+...|.+|..++-... -|.. .++++
T Consensus 70 pGsGKSTLal~la~~~~~~gg~VlyId~E~s-~~~~--ra~rl 109 (356)
T 3hr8_A 70 ESSGKTTLALHAIAEAQKMGGVAAFIDAEHA-LDPV--YAKNL 109 (356)
T ss_dssp TTSSHHHHHHHHHHHHHHTTCCEEEEESSCC-CCHH--HHHHH
T ss_pred CCCCHHHHHHHHHHHHHhcCCeEEEEecccc-cchH--HHHHc
Confidence 5999999999999999888989998876543 2333 55665
No 100
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=89.25 E-value=0.46 Score=45.07 Aligned_cols=36 Identities=22% Similarity=0.313 Sum_probs=30.1
Q ss_pred EE-EEcCcccCCCCchHHHHHHHHHHHhCCCceEEEecCC
Q 017904 63 VI-SVGNLTWGGNGKTPMVEFLAHCLADSEISPLILTRGY 101 (364)
Q Consensus 63 VI-sVGNltvGGtGKTP~v~~L~~~L~~~g~kvaIlsRGY 101 (364)
+| .|| - .|+||||++..|+.++...|.+|.+....-
T Consensus 104 vi~lvG-~--nGsGKTTll~~Lagll~~~~g~V~l~g~D~ 140 (304)
T 1rj9_A 104 VVLVVG-V--NGVGKTTTIAKLGRYYQNLGKKVMFCAGDT 140 (304)
T ss_dssp EEEEEC-S--TTSSHHHHHHHHHHHHHTTTCCEEEECCCC
T ss_pred EEEEEC-C--CCCcHHHHHHHHHHHHHhcCCEEEEEeecC
Confidence 55 555 3 799999999999999998888999987653
No 101
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=89.09 E-value=0.28 Score=46.05 Aligned_cols=35 Identities=17% Similarity=0.374 Sum_probs=25.5
Q ss_pred cEEEEcCcccCCCCchHHHHHHHHHHHhCCCceEEEe
Q 017904 62 PVISVGNLTWGGNGKTPMVEFLAHCLADSEISPLILT 98 (364)
Q Consensus 62 PVIsVGNltvGGtGKTP~v~~L~~~L~~~g~kvaIls 98 (364)
++|.|.+- -||||||++..|++.|...|.++.+++
T Consensus 6 ~iIgItG~--sGSGKSTva~~L~~~lg~~~~~~~vI~ 40 (290)
T 1a7j_A 6 PIISVTGS--SGAGTSTVKHTFDQIFRREGVKAVSIE 40 (290)
T ss_dssp CEEEEESC--C---CCTHHHHHHHHHHHHTCCEEEEE
T ss_pred eEEEEECC--CCCCHHHHHHHHHHHHhhcCCCeeEee
Confidence 56665543 499999999999999987788888886
No 102
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=89.03 E-value=0.23 Score=49.91 Aligned_cols=25 Identities=16% Similarity=0.287 Sum_probs=21.0
Q ss_pred CCCcEEEEcCcccCCCCchHHHHHHHHH
Q 017904 59 LPVPVISVGNLTWGGNGKTPMVEFLAHC 86 (364)
Q Consensus 59 ~~vPVIsVGNltvGGtGKTP~v~~L~~~ 86 (364)
..+.|+.||.. |+|||+++..|+..
T Consensus 32 ~~~ki~iiG~~---~~GKSTLi~~Ll~~ 56 (483)
T 3p26_A 32 PHLSFVVLGHV---DAGKSTLMGRLLYD 56 (483)
T ss_dssp CEEEEEEESCG---GGTHHHHHHHHHHH
T ss_pred CceEEEEECCC---CCCHHHHHHHHHHh
Confidence 34679999986 99999999998765
No 103
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=89.03 E-value=0.24 Score=41.26 Aligned_cols=22 Identities=23% Similarity=0.089 Sum_probs=18.0
Q ss_pred EEEEcCcccCCCCchHHHHHHHHHH
Q 017904 63 VISVGNLTWGGNGKTPMVEFLAHCL 87 (364)
Q Consensus 63 VIsVGNltvGGtGKTP~v~~L~~~L 87 (364)
|+++|.. ||||||+...|++.+
T Consensus 4 i~l~G~~---GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 4 IILEGPD---CCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEECSS---SSSHHHHHHHHHHHH
T ss_pred EEEECCC---CCCHHHHHHHHHHHh
Confidence 4556654 999999999999887
No 104
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=88.90 E-value=0.23 Score=43.20 Aligned_cols=35 Identities=20% Similarity=0.363 Sum_probs=29.0
Q ss_pred EEEEcCcccCCCCchHHHHHHHHHHHhCCCceEEEecC
Q 017904 63 VISVGNLTWGGNGKTPMVEFLAHCLADSEISPLILTRG 100 (364)
Q Consensus 63 VIsVGNltvGGtGKTP~v~~L~~~L~~~g~kvaIlsRG 100 (364)
|.+||. -|+||||++..|++.+...|++++.+.-+
T Consensus 5 v~IvG~---SGsGKSTL~~~L~~~~~~~g~~~G~I~~d 39 (171)
T 2f1r_A 5 LSIVGT---SDSGKTTLITRMMPILRERGLRVAVVKRH 39 (171)
T ss_dssp EEEEES---CHHHHHHHHHHHHHHHHHTTCCEEEEEC-
T ss_pred EEEECC---CCCCHHHHHHHHHHHhhhcCCceEEEEEc
Confidence 346772 49999999999999999999999988754
No 105
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=88.85 E-value=1.9 Score=39.71 Aligned_cols=75 Identities=11% Similarity=0.081 Sum_probs=42.1
Q ss_pred EEEEcCcccCCCCchHHHHHHHHHHHhCCCceEEEec--CCCCCchHHHHHHHhCCCCE-EEeccccchhHHHhhhcCCC
Q 017904 63 VISVGNLTWGGNGKTPMVEFLAHCLADSEISPLILTR--GYAGGDEVRMLERHLLERPA-KIGKNCINPKVGSHLKSGKI 139 (364)
Q Consensus 63 VIsVGNltvGGtGKTP~v~~L~~~L~~~g~kvaIlsR--GYg~GDE~~lla~~~~~~~v-~v~~~~~~~~~~~~~~~~~~ 139 (364)
.+..|+- |+|||+.++.++.....+|.+|.++.- +-..| . .++++. |..+ .++... ..+....+ .++
T Consensus 22 ~v~~G~M---gsGKTT~lL~~~~r~~~~g~kvli~kp~~D~Ryg-~--~i~sr~-G~~~~a~~i~~-~~di~~~~--~~~ 91 (234)
T 2orv_A 22 QVILGPM---FSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYS-S--SFCTHD-RNTMEALPACL-LRDVAQEA--LGV 91 (234)
T ss_dssp EEEECCT---TSCHHHHHHHHHHHHHTTTCCEEEEEETTCCCC---------------CEEEEESS-GGGGHHHH--TTC
T ss_pred EEEECCC---CCcHHHHHHHHHHHHHHCCCeEEEEeecCCccch-H--HHHhhc-CCeeEEEecCC-HHHHHHHh--ccC
Confidence 4567865 899999999999999999999999973 32213 2 244444 3322 222211 11222222 458
Q ss_pred CEEEEcCC
Q 017904 140 GAVILDDG 147 (364)
Q Consensus 140 dviIlDDg 147 (364)
|+|++|.+
T Consensus 92 dvViIDEa 99 (234)
T 2orv_A 92 AVIGIDEG 99 (234)
T ss_dssp SEEEESSG
T ss_pred CEEEEEch
Confidence 99999965
No 106
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=88.65 E-value=0.51 Score=41.38 Aligned_cols=35 Identities=20% Similarity=0.367 Sum_probs=27.4
Q ss_pred cEE-EEcCcccCCCCchHHHHHHHHHHHhCCCceEEEec
Q 017904 62 PVI-SVGNLTWGGNGKTPMVEFLAHCLADSEISPLILTR 99 (364)
Q Consensus 62 PVI-sVGNltvGGtGKTP~v~~L~~~L~~~g~kvaIlsR 99 (364)
-+| ++|. -|+||||++..|+..+...|.++++++-
T Consensus 23 ~~v~I~G~---sGsGKSTl~~~l~~~~~~~g~~~g~v~~ 58 (208)
T 3c8u_A 23 QLVALSGA---PGSGKSTLSNPLAAALSAQGLPAEVVPM 58 (208)
T ss_dssp EEEEEECC---TTSCTHHHHHHHHHHHHHTTCCEEEEES
T ss_pred eEEEEECC---CCCCHHHHHHHHHHHHhhcCCceEEEec
Confidence 344 5553 5999999999999999876777888864
No 107
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=88.59 E-value=0.53 Score=44.05 Aligned_cols=37 Identities=19% Similarity=0.256 Sum_probs=31.5
Q ss_pred CCCcEEEEcCcccCCCCchHHHHHHHHHHHhCCCceEEEe
Q 017904 59 LPVPVISVGNLTWGGNGKTPMVEFLAHCLADSEISPLILT 98 (364)
Q Consensus 59 ~~vPVIsVGNltvGGtGKTP~v~~L~~~L~~~g~kvaIls 98 (364)
.+-|++..|. -|||||+++..+++.+...|.++..++
T Consensus 36 ~~~~lll~G~---~GtGKT~la~~i~~~~~~~~~~~~~i~ 72 (324)
T 1l8q_A 36 LYNPIFIYGS---VGTGKTHLLQAAGNEAKKRGYRVIYSS 72 (324)
T ss_dssp SCSSEEEECS---SSSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCeEEEECC---CCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 3468999996 599999999999999988788877775
No 108
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=88.32 E-value=0.48 Score=44.87 Aligned_cols=36 Identities=31% Similarity=0.404 Sum_probs=30.1
Q ss_pred EEEEcCcccCCCCchHHHHHHHHHHHhCCCceEEEecCC
Q 017904 63 VISVGNLTWGGNGKTPMVEFLAHCLADSEISPLILTRGY 101 (364)
Q Consensus 63 VIsVGNltvGGtGKTP~v~~L~~~L~~~g~kvaIlsRGY 101 (364)
+..|| ..|+||||++..|+.+++..+.+|.+.....
T Consensus 103 i~lvG---~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~ 138 (302)
T 3b9q_A 103 IMIVG---VNGGGKTTSLGKLAHRLKNEGTKVLMAAGDT 138 (302)
T ss_dssp EEEEC---CTTSCHHHHHHHHHHHHHHTTCCEEEECCCC
T ss_pred EEEEc---CCCCCHHHHHHHHHHHHHHcCCeEEEEeecc
Confidence 44667 4799999999999999998888999886554
No 109
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=87.97 E-value=0.48 Score=42.19 Aligned_cols=36 Identities=31% Similarity=0.462 Sum_probs=27.0
Q ss_pred EEEEcCcccCCCCchHHHHHHHHHHHhCCCceEEEecCCCC
Q 017904 63 VISVGNLTWGGNGKTPMVEFLAHCLADSEISPLILTRGYAG 103 (364)
Q Consensus 63 VIsVGNltvGGtGKTP~v~~L~~~L~~~g~kvaIlsRGYg~ 103 (364)
|+.=|+ -|+||||.+..|+++|. +|+++ +++|.-|+
T Consensus 5 I~~EG~---dGsGKsTq~~~L~~~L~-~~~~v-~~~~eP~~ 40 (205)
T 4hlc_A 5 ITFEGP---EGSGKTTVINEVYHRLV-KDYDV-IMTREPGG 40 (205)
T ss_dssp EEEECC---TTSCHHHHHHHHHHHHT-TTSCE-EEEESSTT
T ss_pred EEEECC---CCCcHHHHHHHHHHHHH-CCCCE-EEeeCCCC
Confidence 444465 49999999999999996 57765 66777654
No 110
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=87.88 E-value=0.39 Score=41.65 Aligned_cols=35 Identities=23% Similarity=0.169 Sum_probs=22.5
Q ss_pred hcCCCccCCCCCcEEEEcCcccCCCCchHHHHHHHHHH
Q 017904 50 RFGFFSKHRLPVPVISVGNLTWGGNGKTPMVEFLAHCL 87 (364)
Q Consensus 50 ~~gi~~~~~~~vPVIsVGNltvGGtGKTP~v~~L~~~L 87 (364)
+.|=.+....|.-|+.+|. -||||||+...|++.+
T Consensus 10 ~~~~~~~~~~~~~I~l~G~---~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 10 HSSGLVPRGSHMRVLLLGP---PGAGKGTQAVKLAEKL 44 (201)
T ss_dssp ------CCCSCCEEEEECC---TTSSHHHHHHHHHHHH
T ss_pred ccccccCCCCCeEEEEECC---CCCCHHHHHHHHHHHh
Confidence 3333344444555777775 4999999999999988
No 111
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=87.73 E-value=0.67 Score=42.66 Aligned_cols=38 Identities=24% Similarity=0.259 Sum_probs=29.7
Q ss_pred cCCCccCCCCCcEEEEcCcccCCCCchHHHHHHHHHHHhCCC
Q 017904 51 FGFFSKHRLPVPVISVGNLTWGGNGKTPMVEFLAHCLADSEI 92 (364)
Q Consensus 51 ~gi~~~~~~~vPVIsVGNltvGGtGKTP~v~~L~~~L~~~g~ 92 (364)
.|+-. .+.+.+++..|. -|||||.++..+++.+...+.
T Consensus 59 ~g~~~-~~~~~~vll~G~---~GtGKT~la~~la~~l~~~~~ 96 (309)
T 3syl_A 59 LGLAH-ETPTLHMSFTGN---PGTGKTTVALKMAGLLHRLGY 96 (309)
T ss_dssp HTCCS-SCCCCEEEEEEC---TTSSHHHHHHHHHHHHHHTTS
T ss_pred cCCCC-CCCCceEEEECC---CCCCHHHHHHHHHHHHHhcCC
Confidence 34333 345668999997 599999999999999987654
No 112
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=87.60 E-value=0.82 Score=41.55 Aligned_cols=38 Identities=21% Similarity=0.275 Sum_probs=27.1
Q ss_pred CcEEEEcCcccCCCCchHHHHHHHHHHHhC----CCceEEEecCCC
Q 017904 61 VPVISVGNLTWGGNGKTPMVEFLAHCLADS----EISPLILTRGYA 102 (364)
Q Consensus 61 vPVIsVGNltvGGtGKTP~v~~L~~~L~~~----g~kvaIlsRGYg 102 (364)
.-|+.-|. -|+||||.+..|+++|... |++| +++|.-+
T Consensus 26 ~~I~~eG~---~GsGKsT~~~~l~~~l~~~~~~~g~~v-~~~rep~ 67 (227)
T 3v9p_A 26 KFITFEGI---DGAGKTTHLQWFCDRLQERLGPAGRHV-VVTREPG 67 (227)
T ss_dssp CEEEEECC---C---CHHHHHHHHHHHHHHHGGGTCCE-EEEESSS
T ss_pred eEEEEECC---CCCCHHHHHHHHHHHHHhhccccceee-eeecCCC
Confidence 34555554 5999999999999999988 9888 5677654
No 113
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=87.51 E-value=0.45 Score=41.78 Aligned_cols=34 Identities=24% Similarity=0.341 Sum_probs=26.7
Q ss_pred cEEEEcCcccCCCCchHHHHHHHHHHH-hCCCceEEEe
Q 017904 62 PVISVGNLTWGGNGKTPMVEFLAHCLA-DSEISPLILT 98 (364)
Q Consensus 62 PVIsVGNltvGGtGKTP~v~~L~~~L~-~~g~kvaIls 98 (364)
-|+.+|. -|+||||+...|++.|. +.|+++..+.
T Consensus 27 ~i~~~G~---~GsGKsT~~~~l~~~l~~~~g~~~~~~~ 61 (211)
T 1m7g_A 27 TIWLTGL---SASGKSTLAVELEHQLVRDRRVHAYRLD 61 (211)
T ss_dssp EEEEECS---TTSSHHHHHHHHHHHHHHHHCCCEEEEC
T ss_pred EEEEECC---CCCCHHHHHHHHHHHhccccCCcEEEEC
Confidence 3445554 59999999999999997 7787777664
No 114
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=87.44 E-value=0.39 Score=45.20 Aligned_cols=36 Identities=14% Similarity=0.038 Sum_probs=26.5
Q ss_pred cEEEEcCcccCCCCchHHHHHHHHHHHhCC--CceEEE-ec
Q 017904 62 PVISVGNLTWGGNGKTPMVEFLAHCLADSE--ISPLIL-TR 99 (364)
Q Consensus 62 PVIsVGNltvGGtGKTP~v~~L~~~L~~~g--~kvaIl-sR 99 (364)
.+|.|.+- -|+||||++..|++.|...| .+++++ +-
T Consensus 32 ~ii~I~G~--sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~ 70 (290)
T 1odf_A 32 LFIFFSGP--QGSGKSFTSIQIYNHLMEKYGGEKSIGYASI 70 (290)
T ss_dssp EEEEEECC--TTSSHHHHHHHHHHHHHHHHGGGSCEEEEEG
T ss_pred eEEEEECC--CCCCHHHHHHHHHHHhhhcCCCCceEEEecc
Confidence 56666554 49999999999999998654 455555 44
No 115
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=87.42 E-value=0.56 Score=45.69 Aligned_cols=36 Identities=31% Similarity=0.404 Sum_probs=30.1
Q ss_pred EEEEcCcccCCCCchHHHHHHHHHHHhCCCceEEEecCC
Q 017904 63 VISVGNLTWGGNGKTPMVEFLAHCLADSEISPLILTRGY 101 (364)
Q Consensus 63 VIsVGNltvGGtGKTP~v~~L~~~L~~~g~kvaIlsRGY 101 (364)
+..|| ..|+||||++..|+.+++..+.+|.+.....
T Consensus 160 i~lvG---~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~ 195 (359)
T 2og2_A 160 IMIVG---VNGGGKTTSLGKLAHRLKNEGTKVLMAAGDT 195 (359)
T ss_dssp EEEEC---CTTSCHHHHHHHHHHHHHHTTCCEEEECCCC
T ss_pred EEEEc---CCCChHHHHHHHHHhhccccCCEEEEecccc
Confidence 44666 4799999999999999998888999886654
No 116
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=87.36 E-value=0.66 Score=40.32 Aligned_cols=31 Identities=29% Similarity=0.252 Sum_probs=24.9
Q ss_pred cEEEEcCcccCCCCchHHHHHHHHHHHhCCCce
Q 017904 62 PVISVGNLTWGGNGKTPMVEFLAHCLADSEISP 94 (364)
Q Consensus 62 PVIsVGNltvGGtGKTP~v~~L~~~L~~~g~kv 94 (364)
.+|.+-+. -|+||||+...|++.|...|..+
T Consensus 26 ~~i~l~G~--sGsGKSTl~~~La~~l~~~G~~~ 56 (200)
T 3uie_A 26 CVIWVTGL--SGSGKSTLACALNQMLYQKGKLC 56 (200)
T ss_dssp EEEEEECS--TTSSHHHHHHHHHHHHHHTTCCE
T ss_pred eEEEEECC--CCCCHHHHHHHHHHHHHhcCceE
Confidence 56666666 59999999999999998777543
No 117
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=86.93 E-value=0.69 Score=40.78 Aligned_cols=35 Identities=17% Similarity=0.131 Sum_probs=28.5
Q ss_pred EEEEcCcccCCCCchHHHHHHHHHHHhCCCceEEEecC
Q 017904 63 VISVGNLTWGGNGKTPMVEFLAHCLADSEISPLILTRG 100 (364)
Q Consensus 63 VIsVGNltvGGtGKTP~v~~L~~~L~~~g~kvaIlsRG 100 (364)
++.+|. -|+|||+++..++..+..+|.++..++-.
T Consensus 26 ~~i~G~---~GsGKTtl~~~~~~~~~~~~~~v~~~~~e 60 (247)
T 2dr3_A 26 VLLSGG---PGTGKTIFSQQFLWNGLKMGEPGIYVALE 60 (247)
T ss_dssp EEEEEC---TTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred EEEECC---CCCCHHHHHHHHHHHHHhcCCeEEEEEcc
Confidence 556664 69999999999988887788899988744
No 118
>1e2k_A Thymidine kinase; transferase, antiviral drug, enzyme-prodrug gene therapy, sugar ring pucker; HET: TMC; 1.7A {Herpes simplex virus} SCOP: c.37.1.1 PDB: 1e2i_A* 1e2h_A* 1e2m_A* 1e2n_A* 1e2p_A* 1ki2_A* 1ki3_A* 1ki4_A* 1ki6_B* 1ki7_A* 1ki8_A* 3rdp_A* 2ki5_A* 1kim_A* 1qhi_A* 1p7c_A* 1vtk_A* 2vtk_A* 3vtk_A* 3f0t_A* ...
Probab=86.59 E-value=0.25 Score=47.76 Aligned_cols=35 Identities=14% Similarity=0.200 Sum_probs=24.3
Q ss_pred EEEEcCcccCCCCchHHHHHHHHHHHhCCCceEEEecCCC
Q 017904 63 VISVGNLTWGGNGKTPMVEFLAHCLADSEISPLILTRGYA 102 (364)
Q Consensus 63 VIsVGNltvGGtGKTP~v~~L~~~L~~~g~kvaIlsRGYg 102 (364)
.|+|-++ =|+||||++..|+++|.++| .+.+|+-|
T Consensus 6 fI~~EG~--dGsGKTT~~~~La~~L~~~g---v~~trEPg 40 (331)
T 1e2k_A 6 RVYIDGP--HGMGKTTTTQLLVALGSRDD---IVYVPEPM 40 (331)
T ss_dssp EEEECSC--TTSSHHHHHHHHTC----CC---EEEECCCH
T ss_pred EEEEECC--CCCCHHHHHHHHHHHhhhCC---EEEEeCCC
Confidence 3444444 39999999999999998877 78899875
No 119
>2vos_A Folylpolyglutamate synthase protein FOLC; ligase, peptidoglycan synthesis, cell division; HET: ADP; 2.0A {Mycobacterium tuberculosis} PDB: 2vor_A*
Probab=86.52 E-value=0.68 Score=46.71 Aligned_cols=38 Identities=21% Similarity=0.234 Sum_probs=33.1
Q ss_pred CCcEEEEcCcccCCCCchHHHHHHHHHHHhCCCceEEEecCC
Q 017904 60 PVPVISVGNLTWGGNGKTPMVEFLAHCLADSEISPLILTRGY 101 (364)
Q Consensus 60 ~vPVIsVGNltvGGtGKTP~v~~L~~~L~~~g~kvaIlsRGY 101 (364)
..|||.|. |-.|||+++.++...|++.|++++.++.-+
T Consensus 63 ~~~vI~Vt----GTNGKtST~~~l~~iL~~~G~~vG~~tSp~ 100 (487)
T 2vos_A 63 SYPSIHIA----GTNGKTSVARMVDALVTALHRRTGRTTSPH 100 (487)
T ss_dssp SSCEEEEE----CSSSHHHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred cCeEEEEe----CCCCcHHHHHHHHHHHHHcCCCeEEECCCC
Confidence 35899987 788999999999999999999999876544
No 120
>1osn_A Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, transferase; HET: BVP ADP; 3.20A {Human herpesvirus 3} SCOP: c.37.1.1
Probab=86.37 E-value=0.2 Score=48.67 Aligned_cols=36 Identities=28% Similarity=0.358 Sum_probs=29.3
Q ss_pred EEEEcCcccCCCCchHHH-HHHHHHHHhCCCceEEEecCCCC
Q 017904 63 VISVGNLTWGGNGKTPMV-EFLAHCLADSEISPLILTRGYAG 103 (364)
Q Consensus 63 VIsVGNltvGGtGKTP~v-~~L~~~L~~~g~kvaIlsRGYg~ 103 (364)
|..=||+ |+||||++ ..|+++|.++|. .+.+|+.|+
T Consensus 15 I~iEG~~---GaGKTT~~~~~L~~~l~~~g~--vv~trEPgg 51 (341)
T 1osn_A 15 IYLDGAY---GIGKTTAAEEFLHHFAITPNR--ILLIGEPLS 51 (341)
T ss_dssp EEEEESS---SSCTTHHHHHHHHTTTTSGGG--EEEECCCHH
T ss_pred EEEeCCC---CCCHHHHHHHHHHHHHhhCCc--EEEEeCCCc
Confidence 3444655 99999999 999999988773 788999875
No 121
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=86.35 E-value=0.44 Score=49.60 Aligned_cols=43 Identities=21% Similarity=0.126 Sum_probs=34.2
Q ss_pred cEEEEcCcccCCCCchHHHHHHHHHHHhCCCceEEEecCCCCCchH
Q 017904 62 PVISVGNLTWGGNGKTPMVEFLAHCLADSEISPLILTRGYAGGDEV 107 (364)
Q Consensus 62 PVIsVGNltvGGtGKTP~v~~L~~~L~~~g~kvaIlsRGYg~GDE~ 107 (364)
+.++-| .-|||||.++..++.++.++|.+|.|++---.+-||-
T Consensus 207 ~~lI~G---PPGTGKT~ti~~~I~~l~~~~~~ILv~a~TN~AvD~i 249 (646)
T 4b3f_X 207 LAIIHG---PPGTGKTTTVVEIILQAVKQGLKVLCCAPSNIAVDNL 249 (646)
T ss_dssp EEEEEC---CTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHH
T ss_pred ceEEEC---CCCCCHHHHHHHHHHHHHhCCCeEEEEcCchHHHHHH
Confidence 345666 3699999999999999999999999998765544553
No 122
>1j6u_A UDP-N-acetylmuramate-alanine ligase MURC; structural genomics, TM0231, JCSG, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: c.5.1.1 c.59.1.1 c.72.2.1
Probab=86.34 E-value=0.68 Score=46.36 Aligned_cols=37 Identities=30% Similarity=0.442 Sum_probs=32.5
Q ss_pred CcEEEEcCcccCCCCchHHHHHHHHHHHhCCCceEEEecCC
Q 017904 61 VPVISVGNLTWGGNGKTPMVEFLAHCLADSEISPLILTRGY 101 (364)
Q Consensus 61 vPVIsVGNltvGGtGKTP~v~~L~~~L~~~g~kvaIlsRGY 101 (364)
.|+|.|. |-.||||++..++..|++.|++++..+-|.
T Consensus 114 ~~vI~VT----GTnGKTTTt~ml~~iL~~~G~~~~~~~~g~ 150 (469)
T 1j6u_A 114 KEEFAVT----GTDGKTTTTAMVAHVLKHLRKSPTVFLGGI 150 (469)
T ss_dssp CCEEEEE----CSSSHHHHHHHHHHHHHHTTCCCEEECSSC
T ss_pred CCEEEEE----CCCCHHHHHHHHHHHHHHcCCCceEEECCe
Confidence 5899887 788999999999999999999998776654
No 123
>1e8c_A UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase; peptidoglycan biosynthesis; HET: KCX UAG API; 2.00A {Escherichia coli} SCOP: c.98.1.1 c.59.1.1 c.72.2.1
Probab=86.08 E-value=0.72 Score=46.48 Aligned_cols=36 Identities=22% Similarity=0.271 Sum_probs=31.8
Q ss_pred CCcEEEEcCcccCCCCchHHHHHHHHHHHhCCCceEEEec
Q 017904 60 PVPVISVGNLTWGGNGKTPMVEFLAHCLADSEISPLILTR 99 (364)
Q Consensus 60 ~vPVIsVGNltvGGtGKTP~v~~L~~~L~~~g~kvaIlsR 99 (364)
..|||.|. |-.|||+++..++..|++.|+++++++.
T Consensus 107 ~~~vI~VT----GTnGKTTT~~ml~~iL~~~g~~~~~~gs 142 (498)
T 1e8c_A 107 NLRLVGVT----GTNGKTTTTQLLAQWSQLLGEISAVMGT 142 (498)
T ss_dssp SSEEEEEE----SSSCHHHHHHHHHHHHHHTTCCEEEEET
T ss_pred cCeEEEEe----CCcChHHHHHHHHHHHHhCCCCEEEECC
Confidence 46899887 7889999999999999999999998754
No 124
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=86.07 E-value=0.65 Score=38.62 Aligned_cols=27 Identities=37% Similarity=0.395 Sum_probs=23.2
Q ss_pred CCcEEEEcCcccCCCCchHHHHHHHHHHHh
Q 017904 60 PVPVISVGNLTWGGNGKTPMVEFLAHCLAD 89 (364)
Q Consensus 60 ~vPVIsVGNltvGGtGKTP~v~~L~~~L~~ 89 (364)
+.+|+.+|. -|||||.++..+++.+..
T Consensus 43 ~~~vll~G~---~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 43 KNNPILLGD---PGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp SCEEEEESC---GGGCHHHHHHHHHHHHHT
T ss_pred CCceEEECC---CCCCHHHHHHHHHHHHHh
Confidence 347888896 599999999999999876
No 125
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=86.07 E-value=0.45 Score=40.70 Aligned_cols=23 Identities=22% Similarity=0.377 Sum_probs=19.2
Q ss_pred EEEEcCcccCCCCchHHHHHHHHHHH
Q 017904 63 VISVGNLTWGGNGKTPMVEFLAHCLA 88 (364)
Q Consensus 63 VIsVGNltvGGtGKTP~v~~L~~~L~ 88 (364)
|+.+|. -||||||++..|++.|.
T Consensus 3 I~i~G~---~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 3 IAIFGT---VGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEECC---TTSCHHHHHHHHHHHHC
T ss_pred EEEECC---CccCHHHHHHHHHHhcC
Confidence 556775 49999999999999983
No 126
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=86.00 E-value=0.76 Score=42.24 Aligned_cols=43 Identities=28% Similarity=0.340 Sum_probs=31.9
Q ss_pred CCCccCCCCCcEEEEcCcccCCCCchHHHHHHHHHHHhCCCceEEE
Q 017904 52 GFFSKHRLPVPVISVGNLTWGGNGKTPMVEFLAHCLADSEISPLIL 97 (364)
Q Consensus 52 gi~~~~~~~vPVIsVGNltvGGtGKTP~v~~L~~~L~~~g~kvaIl 97 (364)
|+..+.+...+++.+|. -|||||+++..+++.+...+..+..+
T Consensus 39 ~~~~~~~~~~~~ll~G~---~GtGKt~la~~la~~~~~~~~~~~~~ 81 (311)
T 4fcw_A 39 GLKDPNRPIGSFLFLGP---TGVGKTELAKTLAATLFDTEEAMIRI 81 (311)
T ss_dssp TCSCTTSCSEEEEEESC---SSSSHHHHHHHHHHHHHSCGGGEEEE
T ss_pred CCCCCCCCceEEEEECC---CCcCHHHHHHHHHHHHcCCCcceEEe
Confidence 33344554558999997 59999999999999997655555554
No 127
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=85.87 E-value=1.5 Score=39.50 Aligned_cols=38 Identities=26% Similarity=0.355 Sum_probs=28.1
Q ss_pred CCcEEEEcCcccCCCCchHHHHHHHHHHHhCCCceEEEecCCC
Q 017904 60 PVPVISVGNLTWGGNGKTPMVEFLAHCLADSEISPLILTRGYA 102 (364)
Q Consensus 60 ~vPVIsVGNltvGGtGKTP~v~~L~~~L~~~g~kvaIlsRGYg 102 (364)
+.-|+..|. -|+||||++..|++.|.. |..+ +.++.-+
T Consensus 26 g~~i~i~G~---~GsGKsT~~~~l~~~l~~-~~~~-~~~~~p~ 63 (229)
T 4eaq_A 26 SAFITFEGP---EGSGKTTVINEVYHRLVK-DYDV-IMTREPG 63 (229)
T ss_dssp CEEEEEECC---TTSCHHHHHHHHHHHHTT-TSCE-EEECTTT
T ss_pred CeEEEEEcC---CCCCHHHHHHHHHHHHhc-CCCc-eeecCCC
Confidence 344566665 499999999999999988 8766 4555443
No 128
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=85.81 E-value=1.1 Score=42.44 Aligned_cols=36 Identities=14% Similarity=0.314 Sum_probs=27.8
Q ss_pred CCcEEEEcCcccCCCCchHHHHHHHHHHHhC--------CCceEEEe
Q 017904 60 PVPVISVGNLTWGGNGKTPMVEFLAHCLADS--------EISPLILT 98 (364)
Q Consensus 60 ~vPVIsVGNltvGGtGKTP~v~~L~~~L~~~--------g~kvaIls 98 (364)
+..|+..|- .|||||+++..+++.+.+. +..+..++
T Consensus 45 ~~~vll~G~---~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~ 88 (384)
T 2qby_B 45 KFSNLFLGL---TGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVN 88 (384)
T ss_dssp CCEEEEEEC---TTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEE
T ss_pred CCcEEEECC---CCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEE
Confidence 346888884 7999999999999998765 55555553
No 129
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=85.64 E-value=0.45 Score=40.54 Aligned_cols=30 Identities=27% Similarity=0.246 Sum_probs=24.6
Q ss_pred cEEEEcCcccCCCCchHHHHHHHHHHHhCCCce
Q 017904 62 PVISVGNLTWGGNGKTPMVEFLAHCLADSEISP 94 (364)
Q Consensus 62 PVIsVGNltvGGtGKTP~v~~L~~~L~~~g~kv 94 (364)
+++..|. .|||||.++..+++.+...++..
T Consensus 40 ~~ll~G~---~G~GKT~l~~~l~~~~~~~~~~~ 69 (226)
T 2chg_A 40 HLLFSGP---PGTGKTATAIALARDLFGENWRD 69 (226)
T ss_dssp CEEEECS---TTSSHHHHHHHHHHHHHGGGGGG
T ss_pred eEEEECC---CCCCHHHHHHHHHHHHhcccccc
Confidence 4888895 69999999999999987655443
No 130
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=85.54 E-value=0.6 Score=38.60 Aligned_cols=34 Identities=15% Similarity=0.196 Sum_probs=26.8
Q ss_pred CCCcEEEEcCcccCCCCchHHHHHHHHHHHhCCCceE
Q 017904 59 LPVPVISVGNLTWGGNGKTPMVEFLAHCLADSEISPL 95 (364)
Q Consensus 59 ~~vPVIsVGNltvGGtGKTP~v~~L~~~L~~~g~kva 95 (364)
.+.||+..|. -|||||.++.++++.....+....
T Consensus 23 ~~~~vll~G~---~GtGKt~lA~~i~~~~~~~~~~~v 56 (145)
T 3n70_A 23 TDIAVWLYGA---PGTGRMTGARYLHQFGRNAQGEFV 56 (145)
T ss_dssp CCSCEEEESS---TTSSHHHHHHHHHHSSTTTTSCCE
T ss_pred CCCCEEEECC---CCCCHHHHHHHHHHhCCccCCCEE
Confidence 4579999997 599999999999887755554444
No 131
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=85.41 E-value=0.83 Score=44.31 Aligned_cols=36 Identities=14% Similarity=0.034 Sum_probs=30.1
Q ss_pred EEEEcCcccCCCCchHHHHHHHHHHHhCCCceEEEecCC
Q 017904 63 VISVGNLTWGGNGKTPMVEFLAHCLADSEISPLILTRGY 101 (364)
Q Consensus 63 VIsVGNltvGGtGKTP~v~~L~~~L~~~g~kvaIlsRGY 101 (364)
+++.| -+|+|||+++..++..+..+|.+|+.++=.-
T Consensus 66 i~I~G---~pGsGKTtLal~la~~~~~~g~~vlyid~E~ 101 (356)
T 1u94_A 66 VEIYG---PESSGKTTLTLQVIAAAQREGKTCAFIDAEH 101 (356)
T ss_dssp EEEEC---STTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred EEEEC---CCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 44445 3899999999999999988899999998764
No 132
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=85.40 E-value=0.59 Score=48.47 Aligned_cols=23 Identities=22% Similarity=0.434 Sum_probs=19.1
Q ss_pred cEEEEcCcccCCCCchHHHHHHHHHH
Q 017904 62 PVISVGNLTWGGNGKTPMVEFLAHCL 87 (364)
Q Consensus 62 PVIsVGNltvGGtGKTP~v~~L~~~L 87 (364)
-|+.||.. ++|||+++..|+...
T Consensus 179 ~I~iiG~~---d~GKSTLi~~Ll~~~ 201 (592)
T 3mca_A 179 HLVVTGHV---DSGKSTMLGRIMFEL 201 (592)
T ss_dssp EEEEECCS---SSTHHHHHHHHHHHH
T ss_pred EEEEEcCC---CCCHHHHHHHHHHHc
Confidence 48899985 999999999987654
No 133
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=85.27 E-value=0.6 Score=42.29 Aligned_cols=34 Identities=21% Similarity=0.401 Sum_probs=24.3
Q ss_pred EE-EEcCcccCCCCchHHHHHHHHHHHhC-----CCceEEEec
Q 017904 63 VI-SVGNLTWGGNGKTPMVEFLAHCLADS-----EISPLILTR 99 (364)
Q Consensus 63 VI-sVGNltvGGtGKTP~v~~L~~~L~~~-----g~kvaIlsR 99 (364)
+| +.|. -||||||+...|++.|... |.++.+++=
T Consensus 24 iI~I~G~---~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~ 63 (252)
T 1uj2_A 24 LIGVSGG---TASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQ 63 (252)
T ss_dssp EEEEECS---TTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEG
T ss_pred EEEEECC---CCCCHHHHHHHHHHHhhhhcccccCCceEEEec
Confidence 44 5554 4999999999999987532 456777754
No 134
>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*
Probab=85.02 E-value=0.97 Score=44.68 Aligned_cols=36 Identities=14% Similarity=0.357 Sum_probs=31.9
Q ss_pred CCcEEEEcCcccCCCCchHHHHHHHHHHHhCCCceEEEec
Q 017904 60 PVPVISVGNLTWGGNGKTPMVEFLAHCLADSEISPLILTR 99 (364)
Q Consensus 60 ~vPVIsVGNltvGGtGKTP~v~~L~~~L~~~g~kvaIlsR 99 (364)
+.|+|.|. |-.||||++..++..|++.|+++++..+
T Consensus 103 ~~~vI~VT----GTnGKTTT~~ml~~iL~~~g~~~~~~gn 138 (439)
T 2x5o_A 103 QAPIVAIT----GSNGKSTVTTLVGEMAKAAGVNVGVGGN 138 (439)
T ss_dssp CSCEEEEE----CSSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CCCEEEEE----CCCCHHHHHHHHHHHHHhcCCCEEEecc
Confidence 35899987 7889999999999999999999997765
No 135
>1o5z_A Folylpolyglutamate synthase/dihydrofolate synthas; TM0166, structural genomics, JC protein structure initiative; 2.10A {Thermotoga maritima} SCOP: c.59.1.2 c.72.2.2
Probab=84.94 E-value=0.65 Score=46.15 Aligned_cols=35 Identities=20% Similarity=0.288 Sum_probs=31.4
Q ss_pred CCcEEEEcCcccCCCCchHHHHHHHHHHHhCCCceEEEe
Q 017904 60 PVPVISVGNLTWGGNGKTPMVEFLAHCLADSEISPLILT 98 (364)
Q Consensus 60 ~vPVIsVGNltvGGtGKTP~v~~L~~~L~~~g~kvaIls 98 (364)
..|||.|. |-.|||+++.+++..|++.|++++..+
T Consensus 51 ~~~vI~VT----GTnGKtTT~~~l~~iL~~~G~~vg~~~ 85 (442)
T 1o5z_A 51 EYKTIHIG----GTNGKGSVANMVSNILVSQGYRVGSYY 85 (442)
T ss_dssp SSEEEEEE----CSSSHHHHHHHHHHHHHHHTCCEEEEC
T ss_pred cCCEEEEE----CCcCHHHHHHHHHHHHHHCCCCEEEEC
Confidence 45899887 778999999999999999999999875
No 136
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=84.58 E-value=0.75 Score=39.81 Aligned_cols=23 Identities=26% Similarity=0.514 Sum_probs=18.8
Q ss_pred cEEEEcCcccCCCCchHHHHHHHHHH
Q 017904 62 PVISVGNLTWGGNGKTPMVEFLAHCL 87 (364)
Q Consensus 62 PVIsVGNltvGGtGKTP~v~~L~~~L 87 (364)
-|+.+|. -||||||++..|++.+
T Consensus 20 ~I~l~G~---~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 20 SIVVMGV---SGSGKSSVGEAIAEAC 42 (202)
T ss_dssp CEEEECS---TTSCHHHHHHHHHHHH
T ss_pred EEEEECC---CCCCHHHHHHHHHHHh
Confidence 4556665 4999999999999988
No 137
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=84.57 E-value=1.3 Score=41.41 Aligned_cols=28 Identities=21% Similarity=0.203 Sum_probs=21.2
Q ss_pred cEEEEcCcccCCCCchHHHHHHHHHHHhCCCceEEEe
Q 017904 62 PVISVGNLTWGGNGKTPMVEFLAHCLADSEISPLILT 98 (364)
Q Consensus 62 PVIsVGNltvGGtGKTP~v~~L~~~L~~~g~kvaIls 98 (364)
-|..||. .|+|||+++..|+ |.++++.+
T Consensus 10 ~VaIvG~---~nvGKSTLln~L~------g~~~~i~s 37 (301)
T 1ega_A 10 FIAIVGR---PNVGKSTLLNKLL------GQKISITS 37 (301)
T ss_dssp EEEEECS---SSSSHHHHHHHHH------TCSEEECC
T ss_pred EEEEECC---CCCCHHHHHHHHH------CCCccccC
Confidence 4778886 5999999999886 34666654
No 138
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=84.53 E-value=0.56 Score=39.71 Aligned_cols=23 Identities=22% Similarity=0.294 Sum_probs=18.7
Q ss_pred cEEEEcCcccCCCCchHHHHHHHHHH
Q 017904 62 PVISVGNLTWGGNGKTPMVEFLAHCL 87 (364)
Q Consensus 62 PVIsVGNltvGGtGKTP~v~~L~~~L 87 (364)
-|+.+|. -||||||+...|++.+
T Consensus 5 ~I~l~G~---~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 5 VVFVLGG---PGAGKGTQCARIVEKY 27 (196)
T ss_dssp EEEEECC---TTSSHHHHHHHHHHHH
T ss_pred EEEEECC---CCCCHHHHHHHHHHHh
Confidence 3566665 4999999999999887
No 139
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=84.48 E-value=0.67 Score=39.16 Aligned_cols=23 Identities=22% Similarity=0.339 Sum_probs=18.3
Q ss_pred cEEEEcCcccCCCCchHHHHHHHHHH
Q 017904 62 PVISVGNLTWGGNGKTPMVEFLAHCL 87 (364)
Q Consensus 62 PVIsVGNltvGGtGKTP~v~~L~~~L 87 (364)
-|+.+|. -||||||+...|++.+
T Consensus 8 ~I~l~G~---~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 8 VVFVLGG---PGSGKGTQCANIVRDF 30 (194)
T ss_dssp EEEEEES---TTSSHHHHHHHHHHHH
T ss_pred EEEEECC---CCCCHHHHHHHHHHHh
Confidence 3555664 4999999999999887
No 140
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=84.43 E-value=0.88 Score=39.50 Aligned_cols=36 Identities=17% Similarity=0.078 Sum_probs=28.3
Q ss_pred EEEEcCcccCCCCchHHHHHHHHHHHhCCCceEEEecCC
Q 017904 63 VISVGNLTWGGNGKTPMVEFLAHCLADSEISPLILTRGY 101 (364)
Q Consensus 63 VIsVGNltvGGtGKTP~v~~L~~~L~~~g~kvaIlsRGY 101 (364)
+..+|- -|+|||+++..++..+...|.++.+++...
T Consensus 26 ~~i~G~---~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~ 61 (235)
T 2w0m_A 26 IALTGE---PGTGKTIFSLHFIAKGLRDGDPCIYVTTEE 61 (235)
T ss_dssp EEEECS---TTSSHHHHHHHHHHHHHHHTCCEEEEESSS
T ss_pred EEEEcC---CCCCHHHHHHHHHHHHHHCCCeEEEEEccc
Confidence 555664 599999999999988877677888887543
No 141
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=84.34 E-value=0.56 Score=37.90 Aligned_cols=22 Identities=32% Similarity=0.552 Sum_probs=18.4
Q ss_pred CcEEEEcCcccCCCCchHHHHHHHH
Q 017904 61 VPVISVGNLTWGGNGKTPMVEFLAH 85 (364)
Q Consensus 61 vPVIsVGNltvGGtGKTP~v~~L~~ 85 (364)
.-|+++|+ +|+|||+++..++.
T Consensus 4 ~~i~v~G~---~~~GKssl~~~l~~ 25 (166)
T 2ce2_X 4 YKLVVVGA---GGVGKSALTIQLIQ 25 (166)
T ss_dssp EEEEEEES---TTSSHHHHHHHHHH
T ss_pred eEEEEECC---CCCCHHHHHHHHHh
Confidence 35899998 79999999887764
No 142
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=84.32 E-value=0.76 Score=37.80 Aligned_cols=26 Identities=23% Similarity=0.477 Sum_probs=18.5
Q ss_pred cEEEEcCcccCCCCchHHHHHHHHHHHhCCCc
Q 017904 62 PVISVGNLTWGGNGKTPMVEFLAHCLADSEIS 93 (364)
Q Consensus 62 PVIsVGNltvGGtGKTP~v~~L~~~L~~~g~k 93 (364)
++|++.+. -||||||++..| + +.|+.
T Consensus 2 ~~I~l~G~--~GsGKsT~a~~L-~---~~g~~ 27 (179)
T 3lw7_A 2 KVILITGM--PGSGKSEFAKLL-K---ERGAK 27 (179)
T ss_dssp CEEEEECC--TTSCHHHHHHHH-H---HTTCE
T ss_pred cEEEEECC--CCCCHHHHHHHH-H---HCCCc
Confidence 45655555 599999999888 3 44655
No 143
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=84.27 E-value=1.3 Score=38.04 Aligned_cols=29 Identities=28% Similarity=0.367 Sum_probs=23.7
Q ss_pred CCCcEEEEcCcccCCCCchHHHHHHHHHHHhC
Q 017904 59 LPVPVISVGNLTWGGNGKTPMVEFLAHCLADS 90 (364)
Q Consensus 59 ~~vPVIsVGNltvGGtGKTP~v~~L~~~L~~~ 90 (364)
.+-+++..|- .|||||+++..+++.+...
T Consensus 44 ~~~~~ll~G~---~G~GKT~l~~~~~~~~~~~ 72 (250)
T 1njg_A 44 IHHAYLFSGT---RGVGKTSIARLLAKGLNCE 72 (250)
T ss_dssp CCSEEEEECS---TTSCHHHHHHHHHHHHHCT
T ss_pred CCeEEEEECC---CCCCHHHHHHHHHHHhcCC
Confidence 3446888885 7999999999999988654
No 144
>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1
Probab=84.18 E-value=0.5 Score=46.48 Aligned_cols=36 Identities=14% Similarity=0.173 Sum_probs=25.3
Q ss_pred cEEEEcCcccCCCCchHHHHHHHHHHHhCCCceEEEecCCC
Q 017904 62 PVISVGNLTWGGNGKTPMVEFLAHCLADSEISPLILTRGYA 102 (364)
Q Consensus 62 PVIsVGNltvGGtGKTP~v~~L~~~L~~~g~kvaIlsRGYg 102 (364)
..|+|-++ =|+||||++..|+++|.++| .+++|+-|
T Consensus 50 ~fIt~EG~--dGsGKTT~~~~Lae~L~~~g---vv~trEPg 85 (376)
T 1of1_A 50 LRVYIDGP--HGMGKTTTTQLLVALGSRDD---IVYVPEPM 85 (376)
T ss_dssp EEEEECSS--TTSSHHHHHHHHHC----CC---EEEECCCH
T ss_pred eEEEEECC--CCCCHHHHHHHHHHHhhhCC---EEEEeCCC
Confidence 34666544 39999999999999998877 78899865
No 145
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=84.17 E-value=1.2 Score=40.50 Aligned_cols=34 Identities=9% Similarity=0.081 Sum_probs=29.5
Q ss_pred EEEEcCcccCCCCchHHHHHHHHHHHhCCCceEEEec
Q 017904 63 VISVGNLTWGGNGKTPMVEFLAHCLADSEISPLILTR 99 (364)
Q Consensus 63 VIsVGNltvGGtGKTP~v~~L~~~L~~~g~kvaIlsR 99 (364)
.+..|+- |+|||+.++-++..+..+|.+|.|+.-
T Consensus 31 ~vitG~M---gsGKTT~lL~~a~r~~~~g~kVli~k~ 64 (214)
T 2j9r_A 31 EVICGSM---FSGKSEELIRRVRRTQFAKQHAIVFKP 64 (214)
T ss_dssp EEEECST---TSCHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EEEECCC---CCcHHHHHHHHHHHHHHCCCEEEEEEe
Confidence 3467865 999999999999999999999999963
No 146
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=84.09 E-value=0.64 Score=38.94 Aligned_cols=24 Identities=21% Similarity=0.318 Sum_probs=18.4
Q ss_pred cEEEEcCcccCCCCchHHHHHHHHHH
Q 017904 62 PVISVGNLTWGGNGKTPMVEFLAHCL 87 (364)
Q Consensus 62 PVIsVGNltvGGtGKTP~v~~L~~~L 87 (364)
.+|.+.+. -||||||+...|++.|
T Consensus 8 ~~i~l~G~--~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 8 QHLVLIGF--MGSGKSSLAQELGLAL 31 (168)
T ss_dssp CEEEEESC--TTSSHHHHHHHHHHHH
T ss_pred ceEEEECC--CCCCHHHHHHHHHHHh
Confidence 44544444 4999999999999988
No 147
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=84.01 E-value=0.84 Score=41.28 Aligned_cols=36 Identities=22% Similarity=0.245 Sum_probs=28.9
Q ss_pred CCcEEEEcCcccCCCCchHHHHHHHHHHHhCCCceEEEe
Q 017904 60 PVPVISVGNLTWGGNGKTPMVEFLAHCLADSEISPLILT 98 (364)
Q Consensus 60 ~vPVIsVGNltvGGtGKTP~v~~L~~~L~~~g~kvaIls 98 (364)
+.||+..|.= |||||.++.++++.+...+.....+.
T Consensus 29 ~~~vll~G~~---GtGKt~la~~i~~~~~~~~~~~~~v~ 64 (265)
T 2bjv_A 29 DKPVLIIGER---GTGKELIASRLHYLSSRWQGPFISLN 64 (265)
T ss_dssp CSCEEEECCT---TSCHHHHHHHHHHTSTTTTSCEEEEE
T ss_pred CCCEEEECCC---CCcHHHHHHHHHHhcCccCCCeEEEe
Confidence 4699999974 99999999999998876555555553
No 148
>2wtz_A UDP-N-acetylmuramoyl-L-alanyl-D-glutamate- -2,6-diaminopimelate ligase; nucleotide-binding, peptidoglycan synthesis, MURE, C shape; HET: KCX UAG; 3.00A {Mycobacterium tuberculosis} PDB: 2xja_A*
Probab=83.99 E-value=0.92 Score=46.25 Aligned_cols=36 Identities=19% Similarity=0.256 Sum_probs=31.9
Q ss_pred CCcEEEEcCcccCCCCchHHHHHHHHHHHhCCCceEEEec
Q 017904 60 PVPVISVGNLTWGGNGKTPMVEFLAHCLADSEISPLILTR 99 (364)
Q Consensus 60 ~vPVIsVGNltvGGtGKTP~v~~L~~~L~~~g~kvaIlsR 99 (364)
..|||.|. |-.|||+++..++..|++.|+++++++.
T Consensus 145 ~~~vI~VT----GTnGKTTT~~ml~~iL~~~G~~~g~~gs 180 (535)
T 2wtz_A 145 RLTVIGIT----GTSGKTTTTYLVEAGLRAAGRVAGLIGT 180 (535)
T ss_dssp SSEEEEEE----SSSCHHHHHHHHHHHHHHTTCCEEEESS
T ss_pred cceEEEee----CCCChHHHHHHHHHHHHHCCCCEEEECC
Confidence 35899887 7889999999999999999999998855
No 149
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=83.85 E-value=0.66 Score=39.35 Aligned_cols=23 Identities=30% Similarity=0.316 Sum_probs=18.9
Q ss_pred cEEEEcCcccCCCCchHHHHHHHHHH
Q 017904 62 PVISVGNLTWGGNGKTPMVEFLAHCL 87 (364)
Q Consensus 62 PVIsVGNltvGGtGKTP~v~~L~~~L 87 (364)
-|+.+|. -|||||++...|++.|
T Consensus 7 ~i~l~G~---~GsGKst~a~~La~~l 29 (185)
T 3trf_A 7 NIYLIGL---MGAGKTSVGSQLAKLT 29 (185)
T ss_dssp EEEEECS---TTSSHHHHHHHHHHHH
T ss_pred EEEEECC---CCCCHHHHHHHHHHHh
Confidence 3556664 5999999999999988
No 150
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=83.80 E-value=1.4 Score=40.78 Aligned_cols=42 Identities=24% Similarity=0.390 Sum_probs=28.5
Q ss_pred HHHHHHHHHHhHhcCCCccCCCCCc-EEEEcCcccCCCCchHHHHHHHH
Q 017904 38 YGISLFLRHSFYRFGFFSKHRLPVP-VISVGNLTWGGNGKTPMVEFLAH 85 (364)
Q Consensus 38 Y~~~~~~R~~~y~~gi~~~~~~~vP-VIsVGNltvGGtGKTP~v~~L~~ 85 (364)
...+..++..+-..|+- ..+.| |++||.- |+|||+++..|+.
T Consensus 4 ~~~~~~l~~~~~~~~~~---~~~~~~I~vvG~~---~~GKSTlln~l~g 46 (315)
T 1jwy_B 4 IPVINKLQDVFNTLGSD---PLDLPQIVVVGSQ---SSGKSSVLENIVG 46 (315)
T ss_dssp HHHHHHHHHHTTTSSSC---TTCCCEEEEEECS---SSSHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCC---CCCCCeEEEEcCC---CCCHHHHHHHHHC
Confidence 34455666665555543 44556 6688874 9999999999874
No 151
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=83.75 E-value=1 Score=39.12 Aligned_cols=31 Identities=26% Similarity=0.371 Sum_probs=24.1
Q ss_pred EEEEcCcccCCCCchHHHHHHHHHHHhCCCceEEEec
Q 017904 63 VISVGNLTWGGNGKTPMVEFLAHCLADSEISPLILTR 99 (364)
Q Consensus 63 VIsVGNltvGGtGKTP~v~~L~~~L~~~g~kvaIlsR 99 (364)
|-.+|.. ||||||++..|+..+.. +++++.-
T Consensus 9 i~i~G~~---GsGKSTl~~~l~~~~~~---~i~~v~~ 39 (211)
T 3asz_A 9 IGIAGGT---ASGKTTLAQALARTLGE---RVALLPM 39 (211)
T ss_dssp EEEEEST---TSSHHHHHHHHHHHHGG---GEEEEEG
T ss_pred EEEECCC---CCCHHHHHHHHHHHhCC---CeEEEec
Confidence 4466764 99999999999998853 5777764
No 152
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=83.30 E-value=0.74 Score=39.07 Aligned_cols=23 Identities=35% Similarity=0.475 Sum_probs=18.7
Q ss_pred cEEEEcCcccCCCCchHHHHHHHHHH
Q 017904 62 PVISVGNLTWGGNGKTPMVEFLAHCL 87 (364)
Q Consensus 62 PVIsVGNltvGGtGKTP~v~~L~~~L 87 (364)
-|+.+|. -||||||+...|++.|
T Consensus 7 ~I~l~G~---~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 7 LIIVTGH---PATGKTTLSQALATGL 29 (193)
T ss_dssp EEEEEES---TTSSHHHHHHHHHHHH
T ss_pred EEEEECC---CCCCHHHHHHHHHHHc
Confidence 3556664 5999999999999988
No 153
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=83.29 E-value=0.53 Score=40.97 Aligned_cols=48 Identities=17% Similarity=0.223 Sum_probs=27.2
Q ss_pred HHhHhcCCCccCCCCCcEEEEcCcccCCCCchHHHHHHHHHHHhCCCceEEEecC
Q 017904 46 HSFYRFGFFSKHRLPVPVISVGNLTWGGNGKTPMVEFLAHCLADSEISPLILTRG 100 (364)
Q Consensus 46 ~~~y~~gi~~~~~~~vPVIsVGNltvGGtGKTP~v~~L~~~L~~~g~kvaIlsRG 100 (364)
+.....|+......+.-|.++|.- |+||||++..|++.+. .+.+++-+
T Consensus 7 ~~~~~~~~~~~~~~~~~i~i~G~~---GsGKSTl~~~L~~~~~----~~~~i~~D 54 (207)
T 2qt1_A 7 HHHHSSGLVPRGSKTFIIGISGVT---NSGKTTLAKNLQKHLP----NCSVISQD 54 (207)
T ss_dssp -------CCCCSCCCEEEEEEEST---TSSHHHHHHHHHTTST----TEEEEEGG
T ss_pred cccccccccccCCCCeEEEEECCC---CCCHHHHHHHHHHhcC----CcEEEeCC
Confidence 334556766666554445566653 9999999988877652 45666543
No 154
>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}
Probab=83.27 E-value=1 Score=42.67 Aligned_cols=33 Identities=33% Similarity=0.436 Sum_probs=29.4
Q ss_pred CcEEEEcCcccCCCCchHHHHHHHHHHHhCCCceEEE
Q 017904 61 VPVISVGNLTWGGNGKTPMVEFLAHCLADSEISPLIL 97 (364)
Q Consensus 61 vPVIsVGNltvGGtGKTP~v~~L~~~L~~~g~kvaIl 97 (364)
.|||.|- |-.||||++..++..|++.|++++++
T Consensus 108 ~~~IaVT----GTnGKTTTt~ll~~iL~~~g~~~~~~ 140 (326)
T 3eag_A 108 HWVLGVA----GTHGKTTTASMLAWVLEYAGLAPGFL 140 (326)
T ss_dssp SEEEEEE----SSSCHHHHHHHHHHHHHHTTCCCEEE
T ss_pred CCEEEEE----CCCCHHHHHHHHHHHHHHcCCCceEE
Confidence 5888887 88899999999999999999998754
No 155
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=83.06 E-value=1.2 Score=42.97 Aligned_cols=46 Identities=15% Similarity=0.078 Sum_probs=34.4
Q ss_pred EEEEcCcccCCCCchHHHHHHHHHHHhCCCceEEEecCCCCCchHHHHHHHh
Q 017904 63 VISVGNLTWGGNGKTPMVEFLAHCLADSEISPLILTRGYAGGDEVRMLERHL 114 (364)
Q Consensus 63 VIsVGNltvGGtGKTP~v~~L~~~L~~~g~kvaIlsRGYg~GDE~~lla~~~ 114 (364)
+.+.|. .|+|||+++..++..+...|.++..++-.-. -+.. .++++
T Consensus 64 v~I~G~---pGsGKTtLal~la~~~~~~g~~vlyi~~E~~-~~~~--~a~~l 109 (349)
T 2zr9_A 64 IEIYGP---ESSGKTTVALHAVANAQAAGGIAAFIDAEHA-LDPE--YAKKL 109 (349)
T ss_dssp EEEEES---TTSSHHHHHHHHHHHHHHTTCCEEEEESSCC-CCHH--HHHHT
T ss_pred EEEECC---CCCCHHHHHHHHHHHHHhCCCeEEEEECCCC-cCHH--HHHHc
Confidence 455554 6999999999999988888999999987743 2332 45555
No 156
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=83.02 E-value=1 Score=46.73 Aligned_cols=36 Identities=22% Similarity=0.209 Sum_probs=27.6
Q ss_pred cEEEEcCcccCCCCchHHHHHHHHHHHh----CCCceEEEecC
Q 017904 62 PVISVGNLTWGGNGKTPMVEFLAHCLAD----SEISPLILTRG 100 (364)
Q Consensus 62 PVIsVGNltvGGtGKTP~v~~L~~~L~~----~g~kvaIlsRG 100 (364)
.+++.|. .|||||+++.+++..|.+ .|.++.+++.-
T Consensus 166 ~~vi~G~---pGTGKTt~l~~ll~~l~~~~~~~~~~vll~APT 205 (608)
T 1w36_D 166 ISVISGG---PGTGKTTTVAKLLAALIQMADGERCRIRLAAPT 205 (608)
T ss_dssp EEEEECC---TTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBSS
T ss_pred CEEEEeC---CCCCHHHHHHHHHHHHHHhhhcCCCeEEEEeCC
Confidence 4566664 699999999999999873 46777777553
No 157
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=83.00 E-value=0.68 Score=38.72 Aligned_cols=23 Identities=35% Similarity=0.536 Sum_probs=19.4
Q ss_pred cEEEEcCcccCCCCchHHHHHHHHHH
Q 017904 62 PVISVGNLTWGGNGKTPMVEFLAHCL 87 (364)
Q Consensus 62 PVIsVGNltvGGtGKTP~v~~L~~~L 87 (364)
-|+.+|.- ||||||+...|+..+
T Consensus 6 ~i~l~G~~---GsGKSTl~~~La~~l 28 (173)
T 1kag_A 6 NIFLVGPM---GAGKSTIGRQLAQQL 28 (173)
T ss_dssp CEEEECCT---TSCHHHHHHHHHHHT
T ss_pred eEEEECCC---CCCHHHHHHHHHHHh
Confidence 46777764 999999999999887
No 158
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=82.98 E-value=1.1 Score=41.89 Aligned_cols=36 Identities=25% Similarity=0.446 Sum_probs=27.8
Q ss_pred CCcEEEEcCcccCCCCchHHHHHHHHHHHhC---CCceEEEe
Q 017904 60 PVPVISVGNLTWGGNGKTPMVEFLAHCLADS---EISPLILT 98 (364)
Q Consensus 60 ~vPVIsVGNltvGGtGKTP~v~~L~~~L~~~---g~kvaIls 98 (364)
+-.+++.|- .|||||+++..+++.+... +..+..+.
T Consensus 45 ~~~vli~G~---~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~ 83 (386)
T 2qby_A 45 PNNIFIYGL---TGTGKTAVVKFVLSKLHKKFLGKFKHVYIN 83 (386)
T ss_dssp CCCEEEEEC---TTSSHHHHHHHHHHHHHHHTCSSCEEEEEE
T ss_pred CCeEEEECC---CCCCHHHHHHHHHHHHHHHhcCCceEEEEE
Confidence 457888884 7999999999999998765 55555543
No 159
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=82.74 E-value=0.76 Score=40.09 Aligned_cols=22 Identities=23% Similarity=0.332 Sum_probs=18.8
Q ss_pred EEEEcCcccCCCCchHHHHHHHHHH
Q 017904 63 VISVGNLTWGGNGKTPMVEFLAHCL 87 (364)
Q Consensus 63 VIsVGNltvGGtGKTP~v~~L~~~L 87 (364)
|+..|.. ||||||++..|++.+
T Consensus 3 I~l~G~~---GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 3 IVLMGLP---GAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEECST---TSSHHHHHHHHHHHH
T ss_pred EEEECCC---CCCHHHHHHHHHHHh
Confidence 5677765 999999999998887
No 160
>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A* 1p75_A*
Probab=82.64 E-value=0.63 Score=44.97 Aligned_cols=37 Identities=16% Similarity=0.161 Sum_probs=28.1
Q ss_pred cEEEEcCcccCCCCchHHHHHHHHHHHhCCCceEEEecCCC
Q 017904 62 PVISVGNLTWGGNGKTPMVEFLAHCLADSEISPLILTRGYA 102 (364)
Q Consensus 62 PVIsVGNltvGGtGKTP~v~~L~~~L~~~g~kvaIlsRGYg 102 (364)
..|+|-++ =|+||||++..|+++|...+ ..+.+|.-|
T Consensus 8 ~fI~~EG~--dGaGKTT~~~~La~~L~~~~--~v~~trEPg 44 (334)
T 1p6x_A 8 VRIYLDGV--YGIGKSTTGRVMASAASGGS--PTLYFPEPM 44 (334)
T ss_dssp EEEEEECS--TTSSHHHHHHHHHSGGGCSS--CEEEECCCH
T ss_pred eEEEEECC--CCCCHHHHHHHHHHHhccCC--cEEEEeCCC
Confidence 34555444 39999999999999997643 278899887
No 161
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=82.52 E-value=0.83 Score=38.86 Aligned_cols=23 Identities=26% Similarity=0.381 Sum_probs=18.8
Q ss_pred cEEEEcCcccCCCCchHHHHHHHHHH
Q 017904 62 PVISVGNLTWGGNGKTPMVEFLAHCL 87 (364)
Q Consensus 62 PVIsVGNltvGGtGKTP~v~~L~~~L 87 (364)
-|+.+|. -||||||+...|++.+
T Consensus 11 ~I~l~G~---~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 11 IIFVVGG---PGSGKGTQCEKIVQKY 33 (196)
T ss_dssp EEEEEEC---TTSSHHHHHHHHHHHH
T ss_pred EEEEECC---CCCCHHHHHHHHHHHh
Confidence 4556665 4999999999999988
No 162
>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*
Probab=82.30 E-value=1.8 Score=46.62 Aligned_cols=42 Identities=19% Similarity=0.176 Sum_probs=35.1
Q ss_pred CcEEEEcCcccCCCCchHHHHHHHHHHHhC-----CCceEEEe---cCCCC
Q 017904 61 VPVISVGNLTWGGNGKTPMVEFLAHCLADS-----EISPLILT---RGYAG 103 (364)
Q Consensus 61 vPVIsVGNltvGGtGKTP~v~~L~~~L~~~-----g~kvaIls---RGYg~ 103 (364)
+|.|.|..-. .|+|||.++..|++.|+++ |++|+... .|...
T Consensus 34 ~~~l~I~gt~-s~vGKT~vt~gL~r~l~~~~~~~~G~~V~~fKPv~~g~~~ 83 (831)
T 4a0g_A 34 HPTYLIWSAN-TSLGKTLVSTGIAASFLLQQPSSSATKLLYLKPIQTGFPS 83 (831)
T ss_dssp SCEEEEEESS-SSSCHHHHHHHHHHHHHSCSSCCTTCEEEEEEEEECSTTT
T ss_pred cccEEEEECC-CCCCHHHHHHHHHHHHHhcccccCCceEEEEcccccCCCc
Confidence 5677776653 8999999999999999999 99999997 66543
No 163
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=82.19 E-value=0.84 Score=38.06 Aligned_cols=22 Identities=36% Similarity=0.460 Sum_probs=18.3
Q ss_pred EEEEcCcccCCCCchHHHHHHHHHH
Q 017904 63 VISVGNLTWGGNGKTPMVEFLAHCL 87 (364)
Q Consensus 63 VIsVGNltvGGtGKTP~v~~L~~~L 87 (364)
|+..|. -|||||++...|++.|
T Consensus 5 I~l~G~---~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 5 IFMVGA---RGCGMTTVGRELARAL 26 (173)
T ss_dssp EEEESC---TTSSHHHHHHHHHHHH
T ss_pred EEEECC---CCCCHHHHHHHHHHHh
Confidence 556664 4999999999999988
No 164
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=82.16 E-value=0.87 Score=37.87 Aligned_cols=22 Identities=23% Similarity=0.365 Sum_probs=18.2
Q ss_pred EEEEcCcccCCCCchHHHHHHHHHH
Q 017904 63 VISVGNLTWGGNGKTPMVEFLAHCL 87 (364)
Q Consensus 63 VIsVGNltvGGtGKTP~v~~L~~~L 87 (364)
|+..|. -|||||++...|++.|
T Consensus 3 I~l~G~---~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 3 IYLIGF---MCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEESC---TTSCHHHHHHHHHHHH
T ss_pred EEEECC---CCCCHHHHHHHHHHHh
Confidence 556664 4999999999999988
No 165
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=81.95 E-value=0.79 Score=38.63 Aligned_cols=22 Identities=32% Similarity=0.552 Sum_probs=19.0
Q ss_pred CcEEEEcCcccCCCCchHHHHHHHH
Q 017904 61 VPVISVGNLTWGGNGKTPMVEFLAH 85 (364)
Q Consensus 61 vPVIsVGNltvGGtGKTP~v~~L~~ 85 (364)
..|++||+ +|+|||+++..++.
T Consensus 22 ~ki~vvG~---~~~GKSsli~~l~~ 43 (190)
T 3con_A 22 YKLVVVGA---GGVGKSALTIQLIQ 43 (190)
T ss_dssp EEEEEECS---TTSSHHHHHHHHHH
T ss_pred eEEEEECc---CCCCHHHHHHHHHc
Confidence 46899998 79999999988864
No 166
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=81.85 E-value=1.6 Score=39.77 Aligned_cols=34 Identities=24% Similarity=0.347 Sum_probs=27.0
Q ss_pred CCCcEEEEcCcccCCCCchHHHHHHHHHHHhCCCceEEEe
Q 017904 59 LPVPVISVGNLTWGGNGKTPMVEFLAHCLADSEISPLILT 98 (364)
Q Consensus 59 ~~vPVIsVGNltvGGtGKTP~v~~L~~~L~~~g~kvaIls 98 (364)
.+.+++..|. -|||||.++..+++.+ +.+...++
T Consensus 49 ~~~~vll~G~---~GtGKT~la~~la~~l---~~~~~~i~ 82 (310)
T 1ofh_A 49 TPKNILMIGP---TGVGKTEIARRLAKLA---NAPFIKVE 82 (310)
T ss_dssp CCCCEEEECC---TTSSHHHHHHHHHHHH---TCCEEEEE
T ss_pred CCceEEEECC---CCCCHHHHHHHHHHHh---CCCEEEEc
Confidence 4568999997 4999999999999998 34555553
No 167
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=81.80 E-value=0.89 Score=38.46 Aligned_cols=23 Identities=39% Similarity=0.444 Sum_probs=19.0
Q ss_pred cEEEEcCcccCCCCchHHHHHHHHHH
Q 017904 62 PVISVGNLTWGGNGKTPMVEFLAHCL 87 (364)
Q Consensus 62 PVIsVGNltvGGtGKTP~v~~L~~~L 87 (364)
-|+.+|. -||||||+...|++.+
T Consensus 6 ~I~l~G~---~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 6 AVIFLGP---PGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEECC---TTSCHHHHHHHHHHHH
T ss_pred EEEEECC---CCCCHHHHHHHHHHHh
Confidence 4666775 4999999999999887
No 168
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=81.73 E-value=1.5 Score=44.18 Aligned_cols=52 Identities=19% Similarity=0.260 Sum_probs=29.7
Q ss_pred CceeEEEEeCCCCCCCCccccCCCCCCchh---hhccccEEEEcCCcchhhhhhHHHHHHHH
Q 017904 155 RDLEIVMVNGLMPWGNRKLLPLGPLREPLM---ALKRADIAVVHHADLISEQNLKDIELEMR 213 (364)
Q Consensus 155 rdl~Ivl~Da~~~~gn~~~lPaG~LREp~~---~L~rAd~ivvtk~d~~~~~~~~~i~~~l~ 213 (364)
-|.=|+|+|++.+.. ..-+|-+. .+.---++++||.|+.+++..+.+.+.+.
T Consensus 97 aD~~ilVvda~~g~~-------~qt~e~l~~~~~~~ip~IvviNK~Dl~~~~~~~~~~~~l~ 151 (482)
T 1wb1_A 97 IDLALIVVDAKEGPK-------TQTGEHMLILDHFNIPIIVVITKSDNAGTEEIKRTEMIMK 151 (482)
T ss_dssp CCEEEEEEETTTCSC-------HHHHHHHHHHHHTTCCBCEEEECTTSSCHHHHHHHHHHHH
T ss_pred CCEEEEEEecCCCcc-------HHHHHHHHHHHHcCCCEEEEEECCCcccchhHHHHHHHHH
Confidence 366688999887431 11222222 22223489999999987655554444444
No 169
>1p3d_A UDP-N-acetylmuramate--alanine ligase; alpha/beta protein; HET: UMA ANP; 1.70A {Haemophilus influenzae} SCOP: c.5.1.1 c.59.1.1 c.72.2.1 PDB: 1gqq_A* 1p31_A* 1gqy_A*
Probab=81.66 E-value=1.1 Score=44.79 Aligned_cols=36 Identities=22% Similarity=0.432 Sum_probs=29.8
Q ss_pred CcEEEEcCcccCCCCchHHHHHHHHHHHhCCCceEEEecC
Q 017904 61 VPVISVGNLTWGGNGKTPMVEFLAHCLADSEISPLILTRG 100 (364)
Q Consensus 61 vPVIsVGNltvGGtGKTP~v~~L~~~L~~~g~kvaIlsRG 100 (364)
.|||.|. |-.||||++..++..|++.|++|.+...|
T Consensus 118 ~~vI~VT----GTnGKTTTt~ml~~iL~~~G~~p~~~igg 153 (475)
T 1p3d_A 118 RHGIAVA----GTHGKTTTTAMISMIYTQAKLDPTFVNGG 153 (475)
T ss_dssp SEEEEEE----SSSCHHHHHHHHHHHHHHTTCCCEEEEEE
T ss_pred CCEEEEE----CCCCHHHHHHHHHHHHHhCCCCCEEEECC
Confidence 3788887 77899999999999999999987654433
No 170
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=81.47 E-value=0.82 Score=38.39 Aligned_cols=24 Identities=25% Similarity=0.357 Sum_probs=18.7
Q ss_pred EEEEcCcccCCCCchHHHHHHHHHHH
Q 017904 63 VISVGNLTWGGNGKTPMVEFLAHCLA 88 (364)
Q Consensus 63 VIsVGNltvGGtGKTP~v~~L~~~L~ 88 (364)
+|++.++ -||||||+...|++.|.
T Consensus 5 ~i~l~G~--~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 5 MIILNGG--SSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp EEEEECC--TTSSHHHHHHHHHHHSS
T ss_pred EEEEECC--CCCCHHHHHHHHHHhcC
Confidence 4444444 59999999999999883
No 171
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=81.38 E-value=1.5 Score=42.70 Aligned_cols=37 Identities=14% Similarity=0.045 Sum_probs=30.7
Q ss_pred EEEEcCcccCCCCchHHHHHHHHHHHhCCCceEEEecCCC
Q 017904 63 VISVGNLTWGGNGKTPMVEFLAHCLADSEISPLILTRGYA 102 (364)
Q Consensus 63 VIsVGNltvGGtGKTP~v~~L~~~L~~~g~kvaIlsRGYg 102 (364)
+++.|. .|+|||+++..++..+..+|.+|+.++-...
T Consensus 77 i~I~G~---pGsGKTtlal~la~~~~~~g~~vlyi~~E~s 113 (366)
T 1xp8_A 77 TEIYGP---ESGGKTTLALAIVAQAQKAGGTCAFIDAEHA 113 (366)
T ss_dssp EEEEES---TTSSHHHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred EEEEcC---CCCChHHHHHHHHHHHHHCCCeEEEEECCCC
Confidence 444553 6999999999999998888999999998753
No 172
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=81.26 E-value=0.7 Score=41.39 Aligned_cols=23 Identities=26% Similarity=0.471 Sum_probs=19.1
Q ss_pred EEEEcCcccCCCCchHHHHHHHHHHH
Q 017904 63 VISVGNLTWGGNGKTPMVEFLAHCLA 88 (364)
Q Consensus 63 VIsVGNltvGGtGKTP~v~~L~~~L~ 88 (364)
|+.-|+. |+||||++..|++.|.
T Consensus 5 i~~~G~~---g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 5 LSIEGNI---AVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEECT---TSSHHHHHHHHHHHCT
T ss_pred EEEEcCC---CCCHHHHHHHHHHHcC
Confidence 5556654 9999999999999985
No 173
>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}
Probab=81.22 E-value=1.7 Score=43.18 Aligned_cols=35 Identities=26% Similarity=0.390 Sum_probs=30.4
Q ss_pred CcEEEEcCcccCCCCchHHHHHHHHHHHhCCCceEEEec
Q 017904 61 VPVISVGNLTWGGNGKTPMVEFLAHCLADSEISPLILTR 99 (364)
Q Consensus 61 vPVIsVGNltvGGtGKTP~v~~L~~~L~~~g~kvaIlsR 99 (364)
.|+|.|- |-.||||++..++..|++.|.++.+..+
T Consensus 112 ~~~IaVT----GTnGKTTTt~ml~~iL~~~g~~~~~~Gn 146 (451)
T 3lk7_A 112 SQLIGIT----GSNGKTTTTTMIAEVLNAGGQRGLLAGN 146 (451)
T ss_dssp SEEEEEE----CSSCHHHHHHHHHHHHHHTTCCEEEEET
T ss_pred CCEEEEE----CCCCHHHHHHHHHHHHHhcCCCEEEeee
Confidence 4888887 7889999999999999999998877654
No 174
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=81.22 E-value=1.2 Score=44.25 Aligned_cols=36 Identities=19% Similarity=0.397 Sum_probs=29.4
Q ss_pred CCcEEEEcCcccCCCCchHHHHHHHHHHHhC--CCceEEEe
Q 017904 60 PVPVISVGNLTWGGNGKTPMVEFLAHCLADS--EISPLILT 98 (364)
Q Consensus 60 ~vPVIsVGNltvGGtGKTP~v~~L~~~L~~~--g~kvaIls 98 (364)
+-|++..|. -|||||+++..++..+..+ |.++..++
T Consensus 130 ~~~lll~Gp---~G~GKTtLa~aia~~l~~~~~~~~v~~v~ 167 (440)
T 2z4s_A 130 YNPLFIYGG---VGLGKTHLLQSIGNYVVQNEPDLRVMYIT 167 (440)
T ss_dssp SCCEEEECS---SSSSHHHHHHHHHHHHHHHCCSSCEEEEE
T ss_pred CCeEEEECC---CCCCHHHHHHHHHHHHHHhCCCCeEEEee
Confidence 458999996 5999999999999998765 66666554
No 175
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=81.19 E-value=0.99 Score=38.47 Aligned_cols=23 Identities=26% Similarity=0.371 Sum_probs=18.7
Q ss_pred cEEEEcCcccCCCCchHHHHHHHHHH
Q 017904 62 PVISVGNLTWGGNGKTPMVEFLAHCL 87 (364)
Q Consensus 62 PVIsVGNltvGGtGKTP~v~~L~~~L 87 (364)
-|+.+|. -||||||+...|++.|
T Consensus 14 ~I~l~G~---~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 14 IIFIIGG---PGSGKGTQCEKLVEKY 36 (199)
T ss_dssp EEEEEEC---TTSSHHHHHHHHHHHH
T ss_pred EEEEECC---CCCCHHHHHHHHHHHh
Confidence 3556664 4999999999999988
No 176
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=81.19 E-value=1.6 Score=40.16 Aligned_cols=36 Identities=14% Similarity=0.077 Sum_probs=28.3
Q ss_pred EEEEcCcccCCCCchHHHHHHHHHHHhC-CCceEEEecCC
Q 017904 63 VISVGNLTWGGNGKTPMVEFLAHCLADS-EISPLILTRGY 101 (364)
Q Consensus 63 VIsVGNltvGGtGKTP~v~~L~~~L~~~-g~kvaIlsRGY 101 (364)
++.+|- -|+|||+++..++..+... |.+|.+++-.-
T Consensus 38 ~~i~G~---~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~ 74 (296)
T 1cr0_A 38 IMVTSG---SGMGKSTFVRQQALQWGTAMGKKVGLAMLEE 74 (296)
T ss_dssp EEEEES---TTSSHHHHHHHHHHHHHHTSCCCEEEEESSS
T ss_pred EEEEeC---CCCCHHHHHHHHHHHHHHHcCCeEEEEeCcC
Confidence 455553 6999999999999998765 88888887553
No 177
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=81.17 E-value=1.3 Score=37.35 Aligned_cols=23 Identities=30% Similarity=0.339 Sum_probs=18.8
Q ss_pred cEEEEcCcccCCCCchHHHHHHHHHH
Q 017904 62 PVISVGNLTWGGNGKTPMVEFLAHCL 87 (364)
Q Consensus 62 PVIsVGNltvGGtGKTP~v~~L~~~L 87 (364)
.|+.+|. -|||||++...|++.+
T Consensus 13 ~i~i~G~---~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 13 NILLTGT---PGVGKTTLGKELASKS 35 (180)
T ss_dssp CEEEECS---TTSSHHHHHHHHHHHH
T ss_pred eEEEEeC---CCCCHHHHHHHHHHHh
Confidence 4566663 5999999999999887
No 178
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=80.87 E-value=1 Score=38.91 Aligned_cols=20 Identities=25% Similarity=0.546 Sum_probs=16.6
Q ss_pred EEEEcCcccCCCCchHHHHHHHH
Q 017904 63 VISVGNLTWGGNGKTPMVEFLAH 85 (364)
Q Consensus 63 VIsVGNltvGGtGKTP~v~~L~~ 85 (364)
|.++|.. ||||||+...|++
T Consensus 4 i~i~G~~---GsGKSTl~~~L~~ 23 (204)
T 2if2_A 4 IGLTGNI---GCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEECT---TSSHHHHHHHHHH
T ss_pred EEEECCC---CcCHHHHHHHHHH
Confidence 5567754 9999999999988
No 179
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=80.84 E-value=0.83 Score=39.91 Aligned_cols=22 Identities=23% Similarity=0.265 Sum_probs=18.5
Q ss_pred EEEEcCcccCCCCchHHHHHHHHHH
Q 017904 63 VISVGNLTWGGNGKTPMVEFLAHCL 87 (364)
Q Consensus 63 VIsVGNltvGGtGKTP~v~~L~~~L 87 (364)
|+..|.. ||||||++..|++.+
T Consensus 3 I~l~G~~---GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 3 LVLMGLP---GAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEECST---TSSHHHHHHHHHHHS
T ss_pred EEEECCC---CCCHHHHHHHHHHHh
Confidence 6677865 999999999998876
No 180
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=80.37 E-value=0.84 Score=38.44 Aligned_cols=22 Identities=32% Similarity=0.252 Sum_probs=13.6
Q ss_pred EEEEcCcccCCCCchHHHHHHHHHH
Q 017904 63 VISVGNLTWGGNGKTPMVEFLAHCL 87 (364)
Q Consensus 63 VIsVGNltvGGtGKTP~v~~L~~~L 87 (364)
|+..|. -||||||+...|++.|
T Consensus 8 I~l~G~---~GsGKST~a~~La~~l 29 (183)
T 2vli_A 8 IWINGP---FGVGKTHTAHTLHERL 29 (183)
T ss_dssp EEEECC---C----CHHHHHHHHHS
T ss_pred EEEECC---CCCCHHHHHHHHHHhc
Confidence 445554 4999999999998887
No 181
>2f00_A UDP-N-acetylmuramate--L-alanine ligase; amide bond ligase, ATPase, bacterial cell WALL; 2.50A {Escherichia coli}
Probab=80.36 E-value=1.3 Score=44.53 Aligned_cols=35 Identities=20% Similarity=0.395 Sum_probs=29.3
Q ss_pred CcEEEEcCcccCCCCchHHHHHHHHHHHhCCCceEEEec
Q 017904 61 VPVISVGNLTWGGNGKTPMVEFLAHCLADSEISPLILTR 99 (364)
Q Consensus 61 vPVIsVGNltvGGtGKTP~v~~L~~~L~~~g~kvaIlsR 99 (364)
.|||.|. |-.||||++..++..|++.|++|.+...
T Consensus 119 ~~vI~VT----GTnGKTTTt~ml~~iL~~~G~~p~~~ig 153 (491)
T 2f00_A 119 RHGIAIA----GTHGKTTTTAMVSSIYAEAGLDPTFVNG 153 (491)
T ss_dssp SEEEEEE----SSSCHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred CCEEEEE----CCCCHHHHHHHHHHHHHhCCCCCEEEEC
Confidence 3788887 7789999999999999999998765433
No 182
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=80.06 E-value=1.3 Score=38.30 Aligned_cols=34 Identities=15% Similarity=-0.071 Sum_probs=26.2
Q ss_pred cEEEEcCcccCCCCchHHHHHHHHHHHhCCCceEEEecCC
Q 017904 62 PVISVGNLTWGGNGKTPMVEFLAHCLADSEISPLILTRGY 101 (364)
Q Consensus 62 PVIsVGNltvGGtGKTP~v~~L~~~L~~~g~kvaIlsRGY 101 (364)
-+..+|- .|+|||+++..++. ..|.++..++-.-
T Consensus 22 ~~~i~G~---~GsGKTtl~~~l~~---~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 22 LTQVYGP---YASGKTTLALQTGL---LSGKKVAYVDTEG 55 (220)
T ss_dssp EEEEECS---TTSSHHHHHHHHHH---HHCSEEEEEESSC
T ss_pred EEEEECC---CCCCHHHHHHHHHH---HcCCcEEEEECCC
Confidence 3556663 79999999999998 4577888887553
No 183
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=79.86 E-value=1.4 Score=41.43 Aligned_cols=28 Identities=25% Similarity=0.408 Sum_probs=23.7
Q ss_pred CCcEEEEcCcccCCCCchHHHHHHHHHHHhC
Q 017904 60 PVPVISVGNLTWGGNGKTPMVEFLAHCLADS 90 (364)
Q Consensus 60 ~vPVIsVGNltvGGtGKTP~v~~L~~~L~~~ 90 (364)
+..++..|- .|||||+++..+++.+...
T Consensus 44 ~~~vll~G~---~G~GKT~l~~~~~~~~~~~ 71 (387)
T 2v1u_A 44 PSNALLYGL---TGTGKTAVARLVLRRLEAR 71 (387)
T ss_dssp CCCEEECBC---TTSSHHHHHHHHHHHHHHH
T ss_pred CCcEEEECC---CCCCHHHHHHHHHHHHHHH
Confidence 457888884 7999999999999998664
No 184
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=79.81 E-value=1.1 Score=38.29 Aligned_cols=23 Identities=39% Similarity=0.621 Sum_probs=19.2
Q ss_pred cEEEEcCcccCCCCchHHHHHHHHHH
Q 017904 62 PVISVGNLTWGGNGKTPMVEFLAHCL 87 (364)
Q Consensus 62 PVIsVGNltvGGtGKTP~v~~L~~~L 87 (364)
.|+.+|.. |||||++...|++.+
T Consensus 12 ~I~l~G~~---GsGKSTv~~~La~~l 34 (184)
T 1y63_A 12 NILITGTP---GTGKTSMAEMIAAEL 34 (184)
T ss_dssp EEEEECST---TSSHHHHHHHHHHHS
T ss_pred EEEEECCC---CCCHHHHHHHHHHhc
Confidence 47778865 999999999999873
No 185
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=79.73 E-value=1.7 Score=44.18 Aligned_cols=36 Identities=25% Similarity=0.272 Sum_probs=28.7
Q ss_pred EEEEcCcccCCCCchHHHHHHHHHHHhCCCceEEEecC
Q 017904 63 VISVGNLTWGGNGKTPMVEFLAHCLADSEISPLILTRG 100 (364)
Q Consensus 63 VIsVGNltvGGtGKTP~v~~L~~~L~~~g~kvaIlsRG 100 (364)
+|++-++ =|+|||++...|+++|...++++.+++-|
T Consensus 37 lIvlvGl--pGSGKSTia~~La~~L~~~~~d~~v~s~D 72 (520)
T 2axn_A 37 VIVMVGL--PARGKTYISKKLTRYLNWIGVPTKVFNVG 72 (520)
T ss_dssp EEEEECC--TTSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred EEEEECC--CCCCHHHHHHHHHHHHhhcCCCeEEeccc
Confidence 4444444 69999999999999998888888888753
No 186
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=79.54 E-value=1.1 Score=40.90 Aligned_cols=23 Identities=22% Similarity=0.079 Sum_probs=18.1
Q ss_pred EEEEcCcccCCCCchHHHHHHHHHH
Q 017904 63 VISVGNLTWGGNGKTPMVEFLAHCL 87 (364)
Q Consensus 63 VIsVGNltvGGtGKTP~v~~L~~~L 87 (364)
+|+|-+. -|||||++...|++.+
T Consensus 3 li~I~G~--~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 3 LHLIYGP--TCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEECC--TTSSHHHHHHHHHHHH
T ss_pred EEEEECC--CCcCHHHHHHHHHhcC
Confidence 4444444 5999999999999987
No 187
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=79.26 E-value=1.3 Score=38.80 Aligned_cols=24 Identities=21% Similarity=0.371 Sum_probs=19.7
Q ss_pred CcEEEEcCcccCCCCchHHHHHHHHHH
Q 017904 61 VPVISVGNLTWGGNGKTPMVEFLAHCL 87 (364)
Q Consensus 61 vPVIsVGNltvGGtGKTP~v~~L~~~L 87 (364)
..|+.+|. -||||||+...|++.|
T Consensus 5 ~~I~l~G~---~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 5 IRMVLIGP---PGAGKGTQAPNLQERF 28 (220)
T ss_dssp CEEEEECC---TTSSHHHHHHHHHHHH
T ss_pred cEEEEECC---CCCCHHHHHHHHHHHc
Confidence 45666774 4999999999999988
No 188
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=79.12 E-value=1.8 Score=41.75 Aligned_cols=38 Identities=11% Similarity=0.199 Sum_probs=31.2
Q ss_pred EEEEcCcccCCCCchHHHHHHHHHHHhCCCceEEEecCCC
Q 017904 63 VISVGNLTWGGNGKTPMVEFLAHCLADSEISPLILTRGYA 102 (364)
Q Consensus 63 VIsVGNltvGGtGKTP~v~~L~~~L~~~g~kvaIlsRGYg 102 (364)
++.|+.= -|+|||+|+..++..+..+|.+|+++|-.-.
T Consensus 48 LiiIaG~--pG~GKTt~al~ia~~~a~~g~~Vl~fSlEms 85 (338)
T 4a1f_A 48 LVIIGAR--PSMGKTSLMMNMVLSALNDDRGVAVFSLEMS 85 (338)
T ss_dssp EEEEEEC--TTSCHHHHHHHHHHHHHHTTCEEEEEESSSC
T ss_pred EEEEEeC--CCCCHHHHHHHHHHHHHHcCCeEEEEeCCCC
Confidence 4444443 5999999999999998888999999998754
No 189
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=79.03 E-value=2.7 Score=38.34 Aligned_cols=44 Identities=20% Similarity=0.268 Sum_probs=29.1
Q ss_pred HHHHHHHHHHhHhcCCCccCCCCCcEEEEcCcccCCCCchHHHHHHHH
Q 017904 38 YGISLFLRHSFYRFGFFSKHRLPVPVISVGNLTWGGNGKTPMVEFLAH 85 (364)
Q Consensus 38 Y~~~~~~R~~~y~~gi~~~~~~~vPVIsVGNltvGGtGKTP~v~~L~~ 85 (364)
..++-.++..+-..|....... .-|++||. .|+|||+++..|+.
T Consensus 5 ~~~~~~l~~~l~~~~~~~~~~~-~~i~vvG~---~~~GKSSLln~l~g 48 (299)
T 2aka_B 5 IPLVNRLQDAFSAIGQNADLDL-PQIAVVGG---QSAGKSSVLENFVG 48 (299)
T ss_dssp HHHHHHHHHHHTTSCCCTTCCC-CEEEEEEB---TTSCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCCCCCCCC-CeEEEEeC---CCCCHHHHHHHHHC
Confidence 3445556666655555433322 35889997 59999999998864
No 190
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=78.96 E-value=1.4 Score=39.25 Aligned_cols=27 Identities=26% Similarity=0.394 Sum_probs=23.2
Q ss_pred CCCCcEEEEcCcccCCCCchHHHHHHHHHH
Q 017904 58 RLPVPVISVGNLTWGGNGKTPMVEFLAHCL 87 (364)
Q Consensus 58 ~~~vPVIsVGNltvGGtGKTP~v~~L~~~L 87 (364)
..+.+|+..|. -|||||.++.++++.+
T Consensus 37 ~~~~~vll~G~---~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 37 KVPKGALLLGP---PGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCCCEEEEESC---TTSSHHHHHHHHHHHH
T ss_pred CCCceEEEECC---CCCCHHHHHHHHHHHh
Confidence 34568999996 5999999999999987
No 191
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=78.93 E-value=0.98 Score=38.29 Aligned_cols=22 Identities=36% Similarity=0.505 Sum_probs=17.9
Q ss_pred EEEEcCcccCCCCchHHHHHHHHHH
Q 017904 63 VISVGNLTWGGNGKTPMVEFLAHCL 87 (364)
Q Consensus 63 VIsVGNltvGGtGKTP~v~~L~~~L 87 (364)
|+.+|. -|||||++...|++.|
T Consensus 5 I~l~G~---~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 5 AVLVGL---PGSGKSTIGRRLAKAL 26 (184)
T ss_dssp EEEECS---TTSSHHHHHHHHHHHH
T ss_pred EEEECC---CCCCHHHHHHHHHHHc
Confidence 455564 4999999999999987
No 192
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=78.82 E-value=1.7 Score=44.50 Aligned_cols=37 Identities=19% Similarity=0.229 Sum_probs=28.6
Q ss_pred CCcEEEEcCcccCCCCchHHHHHHHHHHHhC-C---CceEEEec
Q 017904 60 PVPVISVGNLTWGGNGKTPMVEFLAHCLADS-E---ISPLILTR 99 (364)
Q Consensus 60 ~vPVIsVGNltvGGtGKTP~v~~L~~~L~~~-g---~kvaIlsR 99 (364)
.-|++++|. -|||||.++.+-+.+|.++ | .++.+++-
T Consensus 22 ~~~~lV~a~---aGsGKT~~l~~ri~~l~~~~~~~~~~iL~ltf 62 (647)
T 3lfu_A 22 RSNLLVLAG---AGSGKTRVLVHRIAWLMSVENCSPYSIMAVTF 62 (647)
T ss_dssp SSCEEEEEC---TTSCHHHHHHHHHHHHHHTSCCCGGGEEEEES
T ss_pred CCCEEEEEC---CCCCHHHHHHHHHHHHHHhCCCChhhEEEEec
Confidence 458999996 5999999988877777655 3 57788764
No 193
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=78.68 E-value=1.3 Score=38.40 Aligned_cols=23 Identities=30% Similarity=0.380 Sum_probs=18.9
Q ss_pred cEEEEcCcccCCCCchHHHHHHHHHH
Q 017904 62 PVISVGNLTWGGNGKTPMVEFLAHCL 87 (364)
Q Consensus 62 PVIsVGNltvGGtGKTP~v~~L~~~L 87 (364)
.|+.+|- -||||||+...|++.|
T Consensus 27 ~i~l~G~---~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 27 RIFLTGY---MGAGKTTLGKAFARKL 49 (199)
T ss_dssp EEEEECC---TTSCHHHHHHHHHHHH
T ss_pred EEEEEcC---CCCCHHHHHHHHHHHc
Confidence 4556663 5999999999999988
No 194
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=78.65 E-value=1.5 Score=39.43 Aligned_cols=27 Identities=33% Similarity=0.502 Sum_probs=23.3
Q ss_pred CCCCcEEEEcCcccCCCCchHHHHHHHHHH
Q 017904 58 RLPVPVISVGNLTWGGNGKTPMVEFLAHCL 87 (364)
Q Consensus 58 ~~~vPVIsVGNltvGGtGKTP~v~~L~~~L 87 (364)
+.+.+|+.+|- -|||||+++..++..+
T Consensus 43 ~~~~~vll~G~---~GtGKT~la~~la~~~ 69 (257)
T 1lv7_A 43 KIPKGVLMVGP---PGTGKTLLAKAIAGEA 69 (257)
T ss_dssp CCCCEEEEECC---TTSCHHHHHHHHHHHH
T ss_pred CCCCeEEEECc---CCCCHHHHHHHHHHHc
Confidence 45668999996 5999999999999987
No 195
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=78.60 E-value=1.3 Score=39.01 Aligned_cols=23 Identities=26% Similarity=0.475 Sum_probs=18.9
Q ss_pred cEEEEcCcccCCCCchHHHHHHHHHH
Q 017904 62 PVISVGNLTWGGNGKTPMVEFLAHCL 87 (364)
Q Consensus 62 PVIsVGNltvGGtGKTP~v~~L~~~L 87 (364)
-|...|.+ ||||||+...|++.+
T Consensus 14 iIgltG~~---GSGKSTva~~L~~~l 36 (192)
T 2grj_A 14 VIGVTGKI---GTGKSTVCEILKNKY 36 (192)
T ss_dssp EEEEECST---TSSHHHHHHHHHHHH
T ss_pred EEEEECCC---CCCHHHHHHHHHHhc
Confidence 45577776 999999999998875
No 196
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=78.34 E-value=1.4 Score=37.01 Aligned_cols=23 Identities=30% Similarity=0.473 Sum_probs=18.4
Q ss_pred cEEEEcCcccCCCCchHHHHHHHHHH
Q 017904 62 PVISVGNLTWGGNGKTPMVEFLAHCL 87 (364)
Q Consensus 62 PVIsVGNltvGGtGKTP~v~~L~~~L 87 (364)
-++.+|. -|+||||+...|++.+
T Consensus 10 ~i~l~G~---~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 10 IYVLMGV---SGSGKSAVASEVAHQL 32 (175)
T ss_dssp EEEEECS---TTSCHHHHHHHHHHHH
T ss_pred EEEEEcC---CCCCHHHHHHHHHHhh
Confidence 3556665 4999999999999887
No 197
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=78.29 E-value=2.1 Score=40.33 Aligned_cols=37 Identities=14% Similarity=0.078 Sum_probs=29.8
Q ss_pred EEEEcCcccCCCCchHHHHHHHHHHHhCCCceEEEecCC
Q 017904 63 VISVGNLTWGGNGKTPMVEFLAHCLADSEISPLILTRGY 101 (364)
Q Consensus 63 VIsVGNltvGGtGKTP~v~~L~~~L~~~g~kvaIlsRGY 101 (364)
++.|+.= -|+|||+++..++.....+|.+|+++|=.-
T Consensus 70 l~li~G~--pG~GKTtl~l~ia~~~a~~g~~vl~~slE~ 106 (315)
T 3bh0_A 70 FVLIAAR--PSMGKTAFALKQAKNMSDNDDVVNLHSLEM 106 (315)
T ss_dssp EEEEECC--TTSSHHHHHHHHHHHHHTTTCEEEEEESSS
T ss_pred EEEEEeC--CCCCHHHHHHHHHHHHHHcCCeEEEEECCC
Confidence 4444443 599999999999988877888999998774
No 198
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=78.24 E-value=1.3 Score=38.70 Aligned_cols=23 Identities=26% Similarity=0.385 Sum_probs=18.9
Q ss_pred cEEEEcCcccCCCCchHHHHHHHHHH
Q 017904 62 PVISVGNLTWGGNGKTPMVEFLAHCL 87 (364)
Q Consensus 62 PVIsVGNltvGGtGKTP~v~~L~~~L 87 (364)
-|..+|.. ||||||+...|++.+
T Consensus 7 ~i~i~G~~---GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 7 VITIDGPS---GAGKGTLCKAMAEAL 29 (227)
T ss_dssp EEEEECCT---TSSHHHHHHHHHHHH
T ss_pred EEEEECCC---CCCHHHHHHHHHHHh
Confidence 35577765 999999999999877
No 199
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=78.16 E-value=1.1 Score=38.99 Aligned_cols=38 Identities=21% Similarity=0.280 Sum_probs=25.6
Q ss_pred CCcEEEEcCcccCCCCchHHHHHHHHHHHh-CCCceEEEecC
Q 017904 60 PVPVISVGNLTWGGNGKTPMVEFLAHCLAD-SEISPLILTRG 100 (364)
Q Consensus 60 ~vPVIsVGNltvGGtGKTP~v~~L~~~L~~-~g~kvaIlsRG 100 (364)
+..++.+|- -|+||||++..|++.+.. -.+.+...+|.
T Consensus 12 ~~~i~l~G~---sGsGKsTl~~~L~~~~~~~~~~~~~~ttR~ 50 (204)
T 2qor_A 12 IPPLVVCGP---SGVGKGTLIKKVLSEFPSRFRFSISCTTRN 50 (204)
T ss_dssp CCCEEEECC---TTSCHHHHHHHHHHHCTTTEEECCEEECSC
T ss_pred CCEEEEECC---CCCCHHHHHHHHHHhCccceeeeeeecCCC
Confidence 345667773 599999999999998842 22334445554
No 200
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=77.94 E-value=2.2 Score=40.37 Aligned_cols=37 Identities=22% Similarity=0.141 Sum_probs=27.5
Q ss_pred cEEEEcCcccCCCCchHHHHHHHHHHHhC-C-CceEEEecC
Q 017904 62 PVISVGNLTWGGNGKTPMVEFLAHCLADS-E-ISPLILTRG 100 (364)
Q Consensus 62 PVIsVGNltvGGtGKTP~v~~L~~~L~~~-g-~kvaIlsRG 100 (364)
-+|.|-+- -|+||||++..|+..+... | .++++++-.
T Consensus 91 ~ivgI~G~--sGsGKSTL~~~L~gll~~~~G~~~v~~v~qd 129 (312)
T 3aez_A 91 FIIGVAGS--VAVGKSTTARVLQALLARWDHHPRVDLVTTD 129 (312)
T ss_dssp EEEEEECC--TTSCHHHHHHHHHHHHHTSTTCCCEEEEEGG
T ss_pred EEEEEECC--CCchHHHHHHHHHhhccccCCCCeEEEEecC
Confidence 45655444 4999999999999999753 4 578888754
No 201
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=77.79 E-value=1.2 Score=38.39 Aligned_cols=22 Identities=27% Similarity=0.398 Sum_probs=17.3
Q ss_pred EEEEcCcccCCCCchHHHHHHHHHH
Q 017904 63 VISVGNLTWGGNGKTPMVEFLAHCL 87 (364)
Q Consensus 63 VIsVGNltvGGtGKTP~v~~L~~~L 87 (364)
|+..|. -||||||+...|++.+
T Consensus 18 I~l~G~---~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 18 IFVLGG---PGAGKGTQCEKLVKDY 39 (203)
T ss_dssp EEEECS---TTSSHHHHHHHHHHHS
T ss_pred EEEECC---CCCCHHHHHHHHHHHc
Confidence 445554 4999999999998876
No 202
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=77.71 E-value=2 Score=37.67 Aligned_cols=37 Identities=19% Similarity=0.187 Sum_probs=27.3
Q ss_pred EEEEcCcccCCCCchHHHHHHHHH-HHhCCCceEEEecCCC
Q 017904 63 VISVGNLTWGGNGKTPMVEFLAHC-LADSEISPLILTRGYA 102 (364)
Q Consensus 63 VIsVGNltvGGtGKTP~v~~L~~~-L~~~g~kvaIlsRGYg 102 (364)
+++.|. -|+|||.++..++.. ..+.|.++.++|=+-.
T Consensus 33 ~~i~G~---pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E~~ 70 (251)
T 2zts_A 33 VLLTGG---TGTGKTTFAAQFIYKGAEEYGEPGVFVTLEER 70 (251)
T ss_dssp EEEECC---TTSSHHHHHHHHHHHHHHHHCCCEEEEESSSC
T ss_pred EEEEeC---CCCCHHHHHHHHHHHHHHhcCCCceeecccCC
Confidence 445553 599999999987754 5566788999887653
No 203
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=77.56 E-value=1.8 Score=43.08 Aligned_cols=38 Identities=13% Similarity=0.080 Sum_probs=31.2
Q ss_pred EEEEcCcccCCCCchHHHHHHHHHHHhCCCceEEEecCCC
Q 017904 63 VISVGNLTWGGNGKTPMVEFLAHCLADSEISPLILTRGYA 102 (364)
Q Consensus 63 VIsVGNltvGGtGKTP~v~~L~~~L~~~g~kvaIlsRGYg 102 (364)
++.|+.= -|+|||+|+..++.....+|.+|+++|-.-.
T Consensus 199 liiIaG~--pG~GKTtlal~ia~~~a~~g~~vl~fSlEms 236 (444)
T 3bgw_A 199 FVLIAAR--PSMGKTAFALKQAKNMSDNDDVVNLHSLEMG 236 (444)
T ss_dssp EEEEEEC--SSSSHHHHHHHHHHHHHHTTCEEEEECSSSC
T ss_pred EEEEEeC--CCCChHHHHHHHHHHHHHcCCEEEEEECCCC
Confidence 4555544 6999999999999988878999999988754
No 204
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa}
Probab=77.47 E-value=3 Score=39.82 Aligned_cols=37 Identities=16% Similarity=0.083 Sum_probs=27.0
Q ss_pred cEEEEcCcccCCC-CchHHHHHHHHHHHhCCCceEEEecCCC
Q 017904 62 PVISVGNLTWGGN-GKTPMVEFLAHCLADSEISPLILTRGYA 102 (364)
Q Consensus 62 PVIsVGNltvGGt-GKTP~v~~L~~~L~~~g~kvaIlsRGYg 102 (364)
.|+..| ||| |=.-=...|++.|+++|++|..++...|
T Consensus 4 ~i~i~~----GGTgGHi~palala~~L~~~g~~V~~vg~~~g 41 (365)
T 3s2u_A 4 NVLIMA----GGTGGHVFPALACAREFQARGYAVHWLGTPRG 41 (365)
T ss_dssp EEEEEC----CSSHHHHHHHHHHHHHHHHTTCEEEEEECSSS
T ss_pred cEEEEc----CCCHHHHHHHHHHHHHHHhCCCEEEEEECCch
Confidence 355554 899 4443356799999999999999976543
No 205
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=77.31 E-value=2.1 Score=44.33 Aligned_cols=39 Identities=21% Similarity=0.164 Sum_probs=30.4
Q ss_pred cEEEEcCcccCCCCchHHHHHHHHHHHh-CCCceEEEecCCCC
Q 017904 62 PVISVGNLTWGGNGKTPMVEFLAHCLAD-SEISPLILTRGYAG 103 (364)
Q Consensus 62 PVIsVGNltvGGtGKTP~v~~L~~~L~~-~g~kvaIlsRGYg~ 103 (364)
.+++.|- -|||||+++..++.+|.+ .+.++.+++.-..+
T Consensus 197 ~~li~Gp---pGTGKT~~~~~~i~~l~~~~~~~ilv~a~tn~A 236 (624)
T 2gk6_A 197 LSLIQGP---PGTGKTVTSATIVYHLARQGNGPVLVCAPSNIA 236 (624)
T ss_dssp EEEEECC---TTSCHHHHHHHHHHHHHTSSSCCEEEEESSHHH
T ss_pred CeEEECC---CCCCHHHHHHHHHHHHHHcCCCeEEEEeCcHHH
Confidence 3556663 699999999999998876 68899998765543
No 206
>3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4}
Probab=77.27 E-value=1.9 Score=43.76 Aligned_cols=34 Identities=35% Similarity=0.387 Sum_probs=29.9
Q ss_pred CcEEEEcCcccCCCCchHHHHHHHHHHHhCCCceEEEe
Q 017904 61 VPVISVGNLTWGGNGKTPMVEFLAHCLADSEISPLILT 98 (364)
Q Consensus 61 vPVIsVGNltvGGtGKTP~v~~L~~~L~~~g~kvaIls 98 (364)
.|+|.|. |-.||||++..++..|++.|++++++.
T Consensus 122 ~~vIaVT----GTnGKTTTt~li~~iL~~~G~~~~~~i 155 (524)
T 3hn7_A 122 RHVIAVA----GTHGKTTTTTMLAWILHYAGIDAGFLI 155 (524)
T ss_dssp SEEEEEE----CSSCHHHHHHHHHHHHHHTTCCCEEEC
T ss_pred CcEEEEE----CCCCHHHHHHHHHHHHHHcCCCceEEE
Confidence 5888887 788999999999999999999998653
No 207
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=77.15 E-value=2 Score=39.34 Aligned_cols=32 Identities=38% Similarity=0.442 Sum_probs=24.9
Q ss_pred CCCCCcEEEEcCcccCCCCchHHHHHHHHHHHhCCC
Q 017904 57 HRLPVPVISVGNLTWGGNGKTPMVEFLAHCLADSEI 92 (364)
Q Consensus 57 ~~~~vPVIsVGNltvGGtGKTP~v~~L~~~L~~~g~ 92 (364)
.+.+. ++..|. .|||||+++..+++.+...+.
T Consensus 40 ~~~~~-~ll~G~---~G~GKt~la~~l~~~l~~~~~ 71 (323)
T 1sxj_B 40 GNMPH-MIISGM---PGIGKTTSVHCLAHELLGRSY 71 (323)
T ss_dssp CCCCC-EEEECS---TTSSHHHHHHHHHHHHHGGGH
T ss_pred CCCCe-EEEECc---CCCCHHHHHHHHHHHhcCCcc
Confidence 34444 888885 799999999999999865443
No 208
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=76.80 E-value=1.5 Score=39.62 Aligned_cols=25 Identities=24% Similarity=0.159 Sum_probs=20.8
Q ss_pred CCcEEEEcCcccCCCCchHHHHHHHHHH
Q 017904 60 PVPVISVGNLTWGGNGKTPMVEFLAHCL 87 (364)
Q Consensus 60 ~vPVIsVGNltvGGtGKTP~v~~L~~~L 87 (364)
|.-|+..|.. ||||||++..|++.+
T Consensus 29 ~~~I~l~G~~---GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 29 DGRYIFLGAP---GSGKGTQSLNLKKSH 53 (243)
T ss_dssp CEEEEEECCT---TSSHHHHHHHHHHHH
T ss_pred CcEEEEECCC---CCCHHHHHHHHHHHh
Confidence 4457778865 999999999999877
No 209
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=76.55 E-value=3.9 Score=36.98 Aligned_cols=34 Identities=21% Similarity=0.193 Sum_probs=25.9
Q ss_pred CCCCcEEEEcCcccCCCCchHHHHHHHHHHHhCCCceEEE
Q 017904 58 RLPVPVISVGNLTWGGNGKTPMVEFLAHCLADSEISPLIL 97 (364)
Q Consensus 58 ~~~vPVIsVGNltvGGtGKTP~v~~L~~~L~~~g~kvaIl 97 (364)
..+.+|+..|. -|||||.++.++++.+ |.....+
T Consensus 62 ~~~~~vLl~G~---~GtGKT~la~~ia~~~---~~~~~~i 95 (272)
T 1d2n_A 62 TPLVSVLLEGP---PHSGKTALAAKIAEES---NFPFIKI 95 (272)
T ss_dssp CSEEEEEEECS---TTSSHHHHHHHHHHHH---TCSEEEE
T ss_pred CCCeEEEEECC---CCCcHHHHHHHHHHHh---CCCEEEE
Confidence 34458999996 5999999999999985 4454444
No 210
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=76.35 E-value=1.7 Score=36.60 Aligned_cols=22 Identities=32% Similarity=0.519 Sum_probs=18.1
Q ss_pred EEEEcCcccCCCCchHHHHHHHHHH
Q 017904 63 VISVGNLTWGGNGKTPMVEFLAHCL 87 (364)
Q Consensus 63 VIsVGNltvGGtGKTP~v~~L~~~L 87 (364)
|+++|. -||||||+...|++.|
T Consensus 7 i~i~G~---~GsGKsTla~~La~~l 28 (175)
T 1via_A 7 IVFIGF---MGSGKSTLARALAKDL 28 (175)
T ss_dssp EEEECC---TTSCHHHHHHHHHHHH
T ss_pred EEEEcC---CCCCHHHHHHHHHHHc
Confidence 555564 5999999999999987
No 211
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=76.23 E-value=1.4 Score=38.77 Aligned_cols=38 Identities=29% Similarity=0.313 Sum_probs=26.9
Q ss_pred CcEEEEcCcccCCCCchHHHHHHHHHHHhC-CCceEEEecCC
Q 017904 61 VPVISVGNLTWGGNGKTPMVEFLAHCLADS-EISPLILTRGY 101 (364)
Q Consensus 61 vPVIsVGNltvGGtGKTP~v~~L~~~L~~~-g~kvaIlsRGY 101 (364)
.|||.+| .-|+|||+++.+|.+.+... ++.+-.-||.=
T Consensus 2 RpIVi~G---PSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~p 40 (186)
T 1ex7_A 2 RPIVISG---PSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTP 40 (186)
T ss_dssp CCEEEEC---CTTSSHHHHHHHHHHHCTTTEEECCCEECSCC
T ss_pred CEEEEEC---CCCCCHHHHHHHHHHhCCCCeEEEEEEeccCC
Confidence 4899999 46999999999988776431 23444556653
No 212
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=76.17 E-value=1.5 Score=37.41 Aligned_cols=24 Identities=29% Similarity=0.412 Sum_probs=20.3
Q ss_pred cEEEEcCcccCCCCchHHHHHHHHHHH
Q 017904 62 PVISVGNLTWGGNGKTPMVEFLAHCLA 88 (364)
Q Consensus 62 PVIsVGNltvGGtGKTP~v~~L~~~L~ 88 (364)
-+..+|.. |+||||++..++..+-
T Consensus 35 ~v~L~G~n---GaGKTTLlr~l~g~l~ 58 (158)
T 1htw_A 35 MVYLNGDL---GAGKTTLTRGMLQGIG 58 (158)
T ss_dssp EEEEECST---TSSHHHHHHHHHHHTT
T ss_pred EEEEECCC---CCCHHHHHHHHHHhCC
Confidence 45678875 9999999999999883
No 213
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=76.00 E-value=1.6 Score=35.45 Aligned_cols=22 Identities=32% Similarity=0.656 Sum_probs=18.7
Q ss_pred CCcEEEEcCcccCCCCchHHHHHHH
Q 017904 60 PVPVISVGNLTWGGNGKTPMVEFLA 84 (364)
Q Consensus 60 ~vPVIsVGNltvGGtGKTP~v~~L~ 84 (364)
.+.|+++|+ .|+|||+++..++
T Consensus 5 ~~~i~v~G~---~~~GKssl~~~l~ 26 (168)
T 1z2a_A 5 AIKMVVVGN---GAVGKSSMIQRYC 26 (168)
T ss_dssp EEEEEEECS---TTSSHHHHHHHHH
T ss_pred eEEEEEECc---CCCCHHHHHHHHH
Confidence 356899997 6999999999876
No 214
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=75.98 E-value=1.8 Score=37.97 Aligned_cols=25 Identities=20% Similarity=0.307 Sum_probs=20.4
Q ss_pred CcEEEEcCcccCCCCchHHHHHHHHHHH
Q 017904 61 VPVISVGNLTWGGNGKTPMVEFLAHCLA 88 (364)
Q Consensus 61 vPVIsVGNltvGGtGKTP~v~~L~~~L~ 88 (364)
..|+.+|- -||||||+...|++.|.
T Consensus 6 ~~I~l~G~---~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 6 LKVMISGA---PASGKGTQCELIKTKYQ 30 (222)
T ss_dssp CCEEEEES---TTSSHHHHHHHHHHHHC
T ss_pred eEEEEECC---CCCCHHHHHHHHHHHhC
Confidence 35667774 59999999999999883
No 215
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=75.88 E-value=4.7 Score=45.39 Aligned_cols=29 Identities=28% Similarity=0.432 Sum_probs=23.4
Q ss_pred CCcEEEEcCcccCCCCchHHHHHHHHHHHhCC
Q 017904 60 PVPVISVGNLTWGGNGKTPMVEFLAHCLADSE 91 (364)
Q Consensus 60 ~vPVIsVGNltvGGtGKTP~v~~L~~~L~~~g 91 (364)
.+-|+.||+. ++|||+++..|.....+.|
T Consensus 296 ~lnIvIIGhv---DvGKSTLInrLt~~~~~~G 324 (1289)
T 3avx_A 296 HVNVGTIGHV---DHGKTTLTAAITTVLAKTY 324 (1289)
T ss_dssp EEEEEEEEST---TSSHHHHHHHHHHHHHHHS
T ss_pred eeEEEEEcCC---CCCHHHHHHHHHhhhcccc
Confidence 3568899986 9999999999988765544
No 216
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=75.62 E-value=2.8 Score=39.37 Aligned_cols=34 Identities=21% Similarity=0.224 Sum_probs=26.4
Q ss_pred cEEEEcCcccCCCCchHHHHHHHHHHHhC-CCceEEEe
Q 017904 62 PVISVGNLTWGGNGKTPMVEFLAHCLADS-EISPLILT 98 (364)
Q Consensus 62 PVIsVGNltvGGtGKTP~v~~L~~~L~~~-g~kvaIls 98 (364)
.++..|- -|||||+++..+++.+... +..+..+.
T Consensus 46 ~~li~G~---~G~GKTtl~~~l~~~~~~~~~~~~~~i~ 80 (389)
T 1fnn_A 46 RATLLGR---PGTGKTVTLRKLWELYKDKTTARFVYIN 80 (389)
T ss_dssp EEEEECC---TTSSHHHHHHHHHHHHTTSCCCEEEEEE
T ss_pred eEEEECC---CCCCHHHHHHHHHHHHhhhcCeeEEEEe
Confidence 5667774 6999999999999999776 45555553
No 217
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=75.61 E-value=1.6 Score=37.16 Aligned_cols=21 Identities=29% Similarity=0.553 Sum_probs=16.0
Q ss_pred EEEEcCcccCCCCchHHHHHHHHH
Q 017904 63 VISVGNLTWGGNGKTPMVEFLAHC 86 (364)
Q Consensus 63 VIsVGNltvGGtGKTP~v~~L~~~ 86 (364)
|.++|.. |||||++...|++.
T Consensus 11 I~i~G~~---GsGKST~~~~La~~ 31 (203)
T 1uf9_A 11 IGITGNI---GSGKSTVAALLRSW 31 (203)
T ss_dssp EEEEECT---TSCHHHHHHHHHHT
T ss_pred EEEECCC---CCCHHHHHHHHHHC
Confidence 4455654 99999999888774
No 218
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=75.60 E-value=3 Score=38.10 Aligned_cols=25 Identities=32% Similarity=0.304 Sum_probs=19.4
Q ss_pred cEEEEcCcccCCCCchHHHHHHHHHHHh
Q 017904 62 PVISVGNLTWGGNGKTPMVEFLAHCLAD 89 (364)
Q Consensus 62 PVIsVGNltvGGtGKTP~v~~L~~~L~~ 89 (364)
-++++|. .|+|||+++..++..+..
T Consensus 32 i~~i~G~---~GsGKTtl~~~l~~~~~~ 56 (279)
T 1nlf_A 32 VGALVSP---GGAGKSMLALQLAAQIAG 56 (279)
T ss_dssp EEEEEES---TTSSHHHHHHHHHHHHHT
T ss_pred EEEEEcC---CCCCHHHHHHHHHHHHhc
Confidence 3555663 699999999999987754
No 219
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=75.56 E-value=1.6 Score=36.35 Aligned_cols=21 Identities=19% Similarity=0.203 Sum_probs=16.0
Q ss_pred EEEEcCcccCCCCchHHHHHHHH
Q 017904 63 VISVGNLTWGGNGKTPMVEFLAH 85 (364)
Q Consensus 63 VIsVGNltvGGtGKTP~v~~L~~ 85 (364)
+|++.+. -||||||++..|++
T Consensus 4 ~I~i~G~--~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 4 IILTIGC--PGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEECC--TTSSHHHHHHHHHH
T ss_pred EEEEecC--CCCCHHHHHHHHHh
Confidence 4444444 59999999999887
No 220
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=75.46 E-value=1.9 Score=36.94 Aligned_cols=35 Identities=29% Similarity=0.390 Sum_probs=24.6
Q ss_pred cEEEEcCcccCCCCchHHHHHHHHHHHh-CCCceEEEec
Q 017904 62 PVISVGNLTWGGNGKTPMVEFLAHCLAD-SEISPLILTR 99 (364)
Q Consensus 62 PVIsVGNltvGGtGKTP~v~~L~~~L~~-~g~kvaIlsR 99 (364)
+++.+|- =|+||||++..|+..+.. -|+.+...+|
T Consensus 3 ii~l~Gp---sGaGKsTl~~~L~~~~~~~~~~~~~~~tr 38 (186)
T 3a00_A 3 PIVISGP---SGTGKSTLLKKLFAEYPDSFGFSVSSTTR 38 (186)
T ss_dssp CEEEESS---SSSSHHHHHHHHHHHCGGGEECCCEEECS
T ss_pred EEEEECC---CCCCHHHHHHHHHhhCCccceEEeecccc
Confidence 5667774 499999999999998862 3444444444
No 221
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=75.44 E-value=2.5 Score=43.28 Aligned_cols=34 Identities=29% Similarity=0.303 Sum_probs=27.2
Q ss_pred cEEEEcCcccCCCCchHHHHHHHHHHHhCCCceEEEe
Q 017904 62 PVISVGNLTWGGNGKTPMVEFLAHCLADSEISPLILT 98 (364)
Q Consensus 62 PVIsVGNltvGGtGKTP~v~~L~~~L~~~g~kvaIls 98 (364)
-|+..| + .||||||+...|++.|..+|+++.++.
T Consensus 374 ~I~l~G-~--~GsGKSTia~~La~~L~~~G~~~~~ld 407 (546)
T 2gks_A 374 CVWLTG-L--PCAGKSTIAEILATMLQARGRKVTLLD 407 (546)
T ss_dssp EEEEEC-S--TTSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred EEEccC-C--CCCCHHHHHHHHHHHhhhcCCeEEEEC
Confidence 344455 3 699999999999999998898877774
No 222
>3pzx_A Formate--tetrahydrofolate ligase; HET: TOE; 2.20A {Moorella thermoacetica} SCOP: c.37.1.10 PDB: 1fp7_A 1fpm_A* 3qb6_A* 3qus_A* 3rbo_A* 3sin_A* 1eg7_A
Probab=75.27 E-value=3.7 Score=41.91 Aligned_cols=109 Identities=16% Similarity=0.230 Sum_probs=64.1
Q ss_pred hhhccccEEEEc---CCcchhhhhhHHHHHHHHhhccCCcEEEEEEecceeEeecCCCCcccccccCCCeE-EEEecCCC
Q 017904 184 MALKRADIAVVH---HADLISEQNLKDIELEMRDIKKSLSIFFTRMVPSYLFEVGNINSKIPLTAVCNANV-LCVSAIGS 259 (364)
Q Consensus 184 ~~L~rAd~ivvt---k~d~~~~~~~~~i~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~a~sGIg~ 259 (364)
.+|+-||++|.. +.|+-- ++.=.|+-+.....|+.-|+.++.+.-... ++. +.+++...++ .+-.|+.|
T Consensus 290 ~ALkl~dyvVTEAGFGaDlGa-EKF~dIKcR~~gl~P~avVlVATvRALK~h---GG~---~~~~l~~en~~al~~G~~N 362 (557)
T 3pzx_A 290 TALKLADYVVTEAGFGADLGA-EKFYDVKCRYAGFKPDATVIVATVRALKMH---GGV---PKSDLATENLEALREGFAN 362 (557)
T ss_dssp HHHHHCSEEEEEBSSCTTTHH-HHHHHTHHHHHTCCCCEEEEEECHHHHHHH---TTC---CGGGTTSCCHHHHHHHHHH
T ss_pred HHHhccCeEEEecccCcCcch-hhhcCCcccccCCCCCEEEEEeehHHHHhc---CCC---ChhhcCccCHHHHHHHHHH
Confidence 378889988654 355532 333345555555667777777665532211 111 1122322222 22348888
Q ss_pred hHHHHHHHHHhCCcccccc-cCCCCCCCCHHHHHHHHHHHHhhh
Q 017904 260 ANAFVQSLQKLGPCSVNRL-DFNDHHSFQARDIEMIKKKLEELE 302 (364)
Q Consensus 260 P~~F~~~L~~~G~~~~~~~-~f~DHh~yt~~dl~~l~~~~~~~~ 302 (364)
=++=.+.++++|+.++=.+ .|+ .=|++|++.+.+.+++.+
T Consensus 363 L~kHien~~~fGvpvVVaiN~F~---tDT~aEi~~v~~~~~~~G 403 (557)
T 3pzx_A 363 LEKHIENIGKFGVPAVVAINAFP---TDTEAELNLLYELCAKAG 403 (557)
T ss_dssp HHHHHHHHHTTTCCEEEEEECCT---TCCHHHHHHHHHHCCSSE
T ss_pred HHHHHHHHHHcCCCeEEEEeCCC---CCCHHHHHHHHHHHHHcC
Confidence 8888888999998764222 353 347889999888877654
No 223
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=75.21 E-value=1.7 Score=35.06 Aligned_cols=20 Identities=30% Similarity=0.436 Sum_probs=16.6
Q ss_pred cEEEEcCcccCCCCchHHHHHHH
Q 017904 62 PVISVGNLTWGGNGKTPMVEFLA 84 (364)
Q Consensus 62 PVIsVGNltvGGtGKTP~v~~L~ 84 (364)
.|+++|. .|+|||+++..++
T Consensus 3 ki~v~G~---~~~GKSsli~~l~ 22 (161)
T 2dyk_A 3 KVVIVGR---PNVGKSSLFNRLL 22 (161)
T ss_dssp EEEEECC---TTSSHHHHHHHHH
T ss_pred EEEEECC---CCCCHHHHHHHHh
Confidence 3778886 6999999988876
No 224
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=75.21 E-value=1.8 Score=37.42 Aligned_cols=23 Identities=30% Similarity=0.419 Sum_probs=18.3
Q ss_pred cEEEEcCcccCCCCchHHHHHHHHHH
Q 017904 62 PVISVGNLTWGGNGKTPMVEFLAHCL 87 (364)
Q Consensus 62 PVIsVGNltvGGtGKTP~v~~L~~~L 87 (364)
-|+.+|- =||||||+...|++.+
T Consensus 31 ~i~l~G~---~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 31 HVVVMGV---SGSGKTTIAHGVADET 53 (200)
T ss_dssp EEEEECC---TTSCHHHHHHHHHHHH
T ss_pred EEEEECC---CCCCHHHHHHHHHHhh
Confidence 3455564 3999999999999988
No 225
>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A
Probab=75.19 E-value=2.2 Score=42.91 Aligned_cols=33 Identities=27% Similarity=0.474 Sum_probs=28.0
Q ss_pred cEEEEcCcccCCCCchHHHHHHHHHHHhCCCceEEEe
Q 017904 62 PVISVGNLTWGGNGKTPMVEFLAHCLADSEISPLILT 98 (364)
Q Consensus 62 PVIsVGNltvGGtGKTP~v~~L~~~L~~~g~kvaIls 98 (364)
|+|.|. |-.||||++..++..|++.|+++.++.
T Consensus 123 ~~IaVT----GTnGKTTTt~ml~~iL~~~g~~~~~~~ 155 (494)
T 4hv4_A 123 HGIAVA----GTHGKTTTTAMLSSIYAEAGLDPTFVN 155 (494)
T ss_dssp EEEEEE----CSSSHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred CEEEEe----cCCChHHHHHHHHHHHHhcCCCCEEEE
Confidence 788876 788999999999999999998765443
No 226
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=75.06 E-value=2.7 Score=39.43 Aligned_cols=37 Identities=22% Similarity=0.334 Sum_probs=25.6
Q ss_pred EE-EEcCcccCCCCchHHHHHHHHHHH--hCCCceEEEe-cCCC
Q 017904 63 VI-SVGNLTWGGNGKTPMVEFLAHCLA--DSEISPLILT-RGYA 102 (364)
Q Consensus 63 VI-sVGNltvGGtGKTP~v~~L~~~L~--~~g~kvaIls-RGYg 102 (364)
+| ++|. -|+||||++..|+..+. ..+-++.+++ .||.
T Consensus 82 iigI~G~---~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~~ 122 (308)
T 1sq5_A 82 IISIAGS---VAVGKSTTARVLQALLSRWPEHRRVELITTDGFL 122 (308)
T ss_dssp EEEEEEC---TTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGB
T ss_pred EEEEECC---CCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCcc
Confidence 44 5554 49999999999999886 2334576665 4543
No 227
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=74.93 E-value=1.9 Score=38.26 Aligned_cols=23 Identities=26% Similarity=0.345 Sum_probs=19.1
Q ss_pred cEEEEcCcccCCCCchHHHHHHHHHH
Q 017904 62 PVISVGNLTWGGNGKTPMVEFLAHCL 87 (364)
Q Consensus 62 PVIsVGNltvGGtGKTP~v~~L~~~L 87 (364)
-|+.+|. -||||||+...|++.|
T Consensus 18 ~I~l~G~---~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 18 RAVLLGP---PGAGKGTQAPKLAKNF 40 (233)
T ss_dssp EEEEECC---TTSSHHHHHHHHHHHH
T ss_pred EEEEECC---CCCCHHHHHHHHHHHh
Confidence 4666664 4999999999999988
No 228
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=74.71 E-value=1.8 Score=37.76 Aligned_cols=22 Identities=23% Similarity=0.368 Sum_probs=18.6
Q ss_pred EEEEcCcccCCCCchHHHHHHHHHH
Q 017904 63 VISVGNLTWGGNGKTPMVEFLAHCL 87 (364)
Q Consensus 63 VIsVGNltvGGtGKTP~v~~L~~~L 87 (364)
|+..|. -||||||++..|++.+
T Consensus 3 I~l~G~---~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 3 IILLGA---PVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEES---TTSSHHHHHHHHHHHH
T ss_pred EEEECC---CCCCHHHHHHHHHHHh
Confidence 566675 4999999999999988
No 229
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=74.66 E-value=2 Score=40.22 Aligned_cols=36 Identities=28% Similarity=0.376 Sum_probs=28.2
Q ss_pred CCCcEEEEcCcccCCCCchHHHHHHHHHHHhCCCceEEE
Q 017904 59 LPVPVISVGNLTWGGNGKTPMVEFLAHCLADSEISPLIL 97 (364)
Q Consensus 59 ~~vPVIsVGNltvGGtGKTP~v~~L~~~L~~~g~kvaIl 97 (364)
.+.||+..|.= |||||.++.++++.....+.....+
T Consensus 24 ~~~~vLi~Ge~---GtGKt~lAr~i~~~~~~~~~~~v~v 59 (304)
T 1ojl_A 24 SDATVLIHGDS---GTGKELVARALHACSARSDRPLVTL 59 (304)
T ss_dssp TTSCEEEESCT---TSCHHHHHHHHHHHSSCSSSCCCEE
T ss_pred CCCcEEEECCC---CchHHHHHHHHHHhCcccCCCeEEE
Confidence 46799999974 9999999999999876555444444
No 230
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=74.64 E-value=2 Score=36.77 Aligned_cols=24 Identities=17% Similarity=0.386 Sum_probs=18.8
Q ss_pred cEEEEcCcccCCCCchHHHHHHHHHH
Q 017904 62 PVISVGNLTWGGNGKTPMVEFLAHCL 87 (364)
Q Consensus 62 PVIsVGNltvGGtGKTP~v~~L~~~L 87 (364)
|+|.|.+- -|||||++...|++.|
T Consensus 3 ~~i~i~G~--~GsGKst~~~~la~~l 26 (208)
T 3ake_A 3 GIVTIDGP--SASGKSSVARRVAAAL 26 (208)
T ss_dssp SEEEEECS--TTSSHHHHHHHHHHHH
T ss_pred eEEEEECC--CCCCHHHHHHHHHHhc
Confidence 36655544 3999999999999988
No 231
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=74.61 E-value=1.7 Score=38.37 Aligned_cols=23 Identities=17% Similarity=0.356 Sum_probs=18.9
Q ss_pred cEEEEcCcccCCCCchHHHHHHHHHH
Q 017904 62 PVISVGNLTWGGNGKTPMVEFLAHCL 87 (364)
Q Consensus 62 PVIsVGNltvGGtGKTP~v~~L~~~L 87 (364)
-|+.+|. -||||||+...|++.+
T Consensus 9 ~I~l~G~---~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 9 RAVIMGA---PGSGKGTVSSRITTHF 31 (227)
T ss_dssp EEEEEEC---TTSSHHHHHHHHHHHS
T ss_pred EEEEECC---CCCCHHHHHHHHHHHc
Confidence 4666774 5999999999999877
No 232
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=74.32 E-value=2.2 Score=41.33 Aligned_cols=30 Identities=20% Similarity=0.155 Sum_probs=22.2
Q ss_pred cEEEEcCcccCCCCchHHHHHHHHHHHhCCCceEEEe
Q 017904 62 PVISVGNLTWGGNGKTPMVEFLAHCLADSEISPLILT 98 (364)
Q Consensus 62 PVIsVGNltvGGtGKTP~v~~L~~~L~~~g~kvaIls 98 (364)
++|+|.+- -|||||+++..|++.+. +.|||
T Consensus 8 ~lI~I~Gp--tgSGKTtla~~La~~l~-----~~iis 37 (340)
T 3d3q_A 8 FLIVIVGP--TASGKTELSIEVAKKFN-----GEIIS 37 (340)
T ss_dssp EEEEEECS--TTSSHHHHHHHHHHHTT-----EEEEE
T ss_pred ceEEEECC--CcCcHHHHHHHHHHHcC-----Cceec
Confidence 35555544 59999999999999873 45665
No 233
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=74.30 E-value=1.7 Score=44.13 Aligned_cols=23 Identities=13% Similarity=0.133 Sum_probs=19.1
Q ss_pred CcEEEEcCcccCCCCchHHHHHHHH
Q 017904 61 VPVISVGNLTWGGNGKTPMVEFLAH 85 (364)
Q Consensus 61 vPVIsVGNltvGGtGKTP~v~~L~~ 85 (364)
..||+|=+. ||.|||+++.++++
T Consensus 152 ~~vv~I~G~--gGvGKTtLA~~v~~ 174 (549)
T 2a5y_B 152 SFFLFLHGR--AGSGKSVIASQALS 174 (549)
T ss_dssp SEEEEEECS--TTSSHHHHHHHHHH
T ss_pred ceEEEEEcC--CCCCHHHHHHHHHH
Confidence 567766665 99999999999996
No 234
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=74.13 E-value=2 Score=38.06 Aligned_cols=22 Identities=18% Similarity=0.368 Sum_probs=18.6
Q ss_pred EEEEcCcccCCCCchHHHHHHHHHH
Q 017904 63 VISVGNLTWGGNGKTPMVEFLAHCL 87 (364)
Q Consensus 63 VIsVGNltvGGtGKTP~v~~L~~~L 87 (364)
|+..|. -||||||++..|++.+
T Consensus 3 I~l~G~---~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 3 ILIFGP---NGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEECC---TTSCHHHHHHHHHHHH
T ss_pred EEEECC---CCCCHHHHHHHHHHHh
Confidence 566675 4999999999999988
No 235
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=74.02 E-value=2.9 Score=43.78 Aligned_cols=33 Identities=27% Similarity=0.292 Sum_probs=26.6
Q ss_pred EEEEcCcccCCCCchHHHHHHHHHHHhCCCceEEE
Q 017904 63 VISVGNLTWGGNGKTPMVEFLAHCLADSEISPLIL 97 (364)
Q Consensus 63 VIsVGNltvGGtGKTP~v~~L~~~L~~~g~kvaIl 97 (364)
+|.+-++ -||||||+...|++.|.++|+.+..+
T Consensus 54 lIvLtGl--sGSGKSTlAr~La~~L~~~G~~~v~l 86 (630)
T 1x6v_B 54 TVWLTGL--SGAGKTTVSMALEEYLVCHGIPCYTL 86 (630)
T ss_dssp EEEEECS--TTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEEeC--CCCCHHHHHHHHHHHHHhcCCeEEEe
Confidence 4555445 59999999999999999888877665
No 236
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=73.44 E-value=3.1 Score=40.04 Aligned_cols=48 Identities=15% Similarity=0.049 Sum_probs=35.0
Q ss_pred cEEEEcCcccCCCCchHHHHHHHHHHHhCCCceEEEecCCCCCchHHHHHHHhCC
Q 017904 62 PVISVGNLTWGGNGKTPMVEFLAHCLADSEISPLILTRGYAGGDEVRMLERHLLE 116 (364)
Q Consensus 62 PVIsVGNltvGGtGKTP~v~~L~~~L~~~g~kvaIlsRGYg~GDE~~lla~~~~~ 116 (364)
-+.++|. -|+|||+++..++..+...|.++.|+-. +++- ..+.+.+.|
T Consensus 37 ~~~i~G~---~G~GKs~~~~~~~~~~~~~~~~~~~~D~--~~~~--~~~~~~~gg 84 (392)
T 4ag6_A 37 NWTILAK---PGAGKSFTAKMLLLREYMQGSRVIIIDP--EREY--KEMCRKLGG 84 (392)
T ss_dssp CEEEECC---TTSSHHHHHHHHHHHHHTTTCCEEEEES--SCCS--HHHHHHTTC
T ss_pred ceEEEcC---CCCCHHHHHHHHHHHHHHCCCEEEEEeC--CcCH--HHHHHHcCC
Confidence 4677885 4999999999999999888999888743 3222 235555544
No 237
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=73.27 E-value=0.67 Score=42.17 Aligned_cols=24 Identities=25% Similarity=0.425 Sum_probs=18.8
Q ss_pred cEEEEcCcccCCCCchHHHHHHHHHHH
Q 017904 62 PVISVGNLTWGGNGKTPMVEFLAHCLA 88 (364)
Q Consensus 62 PVIsVGNltvGGtGKTP~v~~L~~~L~ 88 (364)
-|+..|+. ||||||++..|++.|.
T Consensus 26 ~I~ieG~~---GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 26 KISIEGNI---AAGKSTFVNILKQLCE 49 (263)
T ss_dssp EEEEECST---TSSHHHHHTTTGGGCT
T ss_pred EEEEECCC---CCCHHHHHHHHHHhcC
Confidence 34455554 9999999999999884
No 238
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=73.13 E-value=5.5 Score=39.61 Aligned_cols=50 Identities=20% Similarity=0.210 Sum_probs=34.5
Q ss_pred cEEEEcCcccCCCCchHHHHHHHHHHHhCC--CceEEEecCCCCCchHHHHHHHhC
Q 017904 62 PVISVGNLTWGGNGKTPMVEFLAHCLADSE--ISPLILTRGYAGGDEVRMLERHLL 115 (364)
Q Consensus 62 PVIsVGNltvGGtGKTP~v~~L~~~L~~~g--~kvaIlsRGYg~GDE~~lla~~~~ 115 (364)
-+.+||. -|+|||+++..+++...+++ ..+.++.=|- ++.|...+.+.+.
T Consensus 176 r~~IvG~---sG~GKTtLl~~Iar~i~~~~~~v~~I~~lIGE-R~~Ev~~~~~~~~ 227 (422)
T 3ice_A 176 RGLIVAP---PKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDE-RPEEVTEMQRLVK 227 (422)
T ss_dssp EEEEECC---SSSSHHHHHHHHHHHHHHHCTTSEEEEEEESS-CHHHHHHHHTTCS
T ss_pred EEEEecC---CCCChhHHHHHHHHHHhhcCCCeeEEEEEecC-ChHHHHHHHHHhC
Confidence 5667775 49999999999999987643 3444554453 3677766666554
No 239
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=72.72 E-value=2.1 Score=36.36 Aligned_cols=23 Identities=26% Similarity=0.387 Sum_probs=19.3
Q ss_pred CCcEEEEcCcccCCCCchHHHHHHHH
Q 017904 60 PVPVISVGNLTWGGNGKTPMVEFLAH 85 (364)
Q Consensus 60 ~vPVIsVGNltvGGtGKTP~v~~L~~ 85 (364)
.+.|+++|+ .|+|||+++..+..
T Consensus 28 ~~ki~v~G~---~~vGKSsli~~l~~ 50 (196)
T 2atv_A 28 EVKLAIFGR---AGVGKSALVVRFLT 50 (196)
T ss_dssp CEEEEEECC---TTSSHHHHHHHHHH
T ss_pred ceEEEEECC---CCCCHHHHHHHHHh
Confidence 467999997 69999999987764
No 240
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=72.69 E-value=2.9 Score=37.00 Aligned_cols=37 Identities=19% Similarity=0.196 Sum_probs=24.5
Q ss_pred CCcEEEEcCcccCCCCchHHHHHHHHHHH-----hCCCceEEEec
Q 017904 60 PVPVISVGNLTWGGNGKTPMVEFLAHCLA-----DSEISPLILTR 99 (364)
Q Consensus 60 ~vPVIsVGNltvGGtGKTP~v~~L~~~L~-----~~g~kvaIlsR 99 (364)
+.-++..|+- |||||.++.+++..+. ++|.++..+++
T Consensus 5 ~mi~l~tG~p---GsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~ 46 (199)
T 2r2a_A 5 AEICLITGTP---GSGKTLKMVSMMANDEMFKPDENGIRRKVFTN 46 (199)
T ss_dssp CCEEEEECCT---TSSHHHHHHHHHHHCGGGSCCTTSCCCCEEEC
T ss_pred eeEEEEEeCC---CCCHHHHHHHHHHHHHhhcccccCceEEEEec
Confidence 3345677765 9999999888765543 56745554555
No 241
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=72.63 E-value=3.6 Score=39.23 Aligned_cols=34 Identities=32% Similarity=0.425 Sum_probs=26.7
Q ss_pred CCCcEEEEcCcccCCCCchHHHHHHHHHHHhCCCceEEEe
Q 017904 59 LPVPVISVGNLTWGGNGKTPMVEFLAHCLADSEISPLILT 98 (364)
Q Consensus 59 ~~vPVIsVGNltvGGtGKTP~v~~L~~~L~~~g~kvaIls 98 (364)
.+.+++..|. -|||||.++..+++.+ |.....+.
T Consensus 71 ~~~~ill~Gp---~GtGKT~la~~la~~l---~~~~~~~~ 104 (376)
T 1um8_A 71 SKSNILLIGP---TGSGKTLMAQTLAKHL---DIPIAISD 104 (376)
T ss_dssp CCCCEEEECC---TTSSHHHHHHHHHHHT---TCCEEEEE
T ss_pred CCCCEEEECC---CCCCHHHHHHHHHHHh---CCCEEEec
Confidence 4568999997 4999999999999988 44555443
No 242
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=72.49 E-value=2.3 Score=38.49 Aligned_cols=26 Identities=27% Similarity=0.351 Sum_probs=22.6
Q ss_pred CCCcEEEEcCcccCCCCchHHHHHHHHHH
Q 017904 59 LPVPVISVGNLTWGGNGKTPMVEFLAHCL 87 (364)
Q Consensus 59 ~~vPVIsVGNltvGGtGKTP~v~~L~~~L 87 (364)
.+.+++..|. -|||||.++..+++.+
T Consensus 50 ~~~~~ll~G~---~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 50 PPKGILLYGP---PGTGKTLLAKAVATET 75 (285)
T ss_dssp CCSEEEEESS---SSSSHHHHHHHHHHHT
T ss_pred CCCeEEEECC---CCCcHHHHHHHHHHHh
Confidence 4567999996 6999999999999887
No 243
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=72.44 E-value=3.7 Score=40.63 Aligned_cols=30 Identities=20% Similarity=0.176 Sum_probs=26.0
Q ss_pred CCCCchHHHHHHHHHHHh-CCCceEEEecCC
Q 017904 72 GGNGKTPMVEFLAHCLAD-SEISPLILTRGY 101 (364)
Q Consensus 72 GGtGKTP~v~~L~~~L~~-~g~kvaIlsRGY 101 (364)
-|+|||+++..++..+.. .|.+|.++|-.-
T Consensus 212 pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~ 242 (454)
T 2r6a_A 212 PSVGKTAFALNIAQNVATKTNENVAIFSLEM 242 (454)
T ss_dssp TTSCHHHHHHHHHHHHHHHSSCCEEEEESSS
T ss_pred CCCCHHHHHHHHHHHHHHhCCCcEEEEECCC
Confidence 599999999999998764 688999999765
No 244
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=72.44 E-value=4.2 Score=36.94 Aligned_cols=34 Identities=9% Similarity=0.004 Sum_probs=27.0
Q ss_pred EEEcCcccCCCCchHHHHHHHHHHHhCCCceEEEecC
Q 017904 64 ISVGNLTWGGNGKTPMVEFLAHCLADSEISPLILTRG 100 (364)
Q Consensus 64 IsVGNltvGGtGKTP~v~~L~~~L~~~g~kvaIlsRG 100 (364)
+..|.. |+|||+.+.-.+..+..+|.++.|+.-.
T Consensus 32 vitG~M---~sGKTT~Llr~~~r~~~~g~kvli~kp~ 65 (219)
T 3e2i_A 32 CITGSM---FSGKSEELIRRLRRGIYAKQKVVVFKPA 65 (219)
T ss_dssp EEEECT---TSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred EEECCC---CCCHHHHHHHHHHHHHHcCCceEEEEec
Confidence 456654 9999997777788888889999988653
No 245
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=72.29 E-value=3.5 Score=40.95 Aligned_cols=36 Identities=22% Similarity=0.255 Sum_probs=28.2
Q ss_pred CCcEEEEcCcccCCCCchHHHHHHHHHHHhCCCceEEEe
Q 017904 60 PVPVISVGNLTWGGNGKTPMVEFLAHCLADSEISPLILT 98 (364)
Q Consensus 60 ~vPVIsVGNltvGGtGKTP~v~~L~~~L~~~g~kvaIls 98 (364)
+.-|+.||- -|+|||++...|++.|...+....+++
T Consensus 39 ~~~IvlvGl---pGsGKSTia~~La~~l~~~~~~t~~~~ 74 (469)
T 1bif_A 39 PTLIVMVGL---PARGKTYISKKLTRYLNFIGVPTREFN 74 (469)
T ss_dssp CEEEEEECC---TTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred cEEEEEECC---CCCCHHHHHHHHHHHHhccCCCceEEe
Confidence 345677773 699999999999999987777766654
No 246
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=72.13 E-value=2.2 Score=36.64 Aligned_cols=23 Identities=30% Similarity=0.260 Sum_probs=18.6
Q ss_pred CCcEEEEcCcccCCCCchHHHHHHHH
Q 017904 60 PVPVISVGNLTWGGNGKTPMVEFLAH 85 (364)
Q Consensus 60 ~vPVIsVGNltvGGtGKTP~v~~L~~ 85 (364)
...|++||. .|+|||+++..++.
T Consensus 7 ~~ki~vvG~---~~~GKTsli~~l~~ 29 (214)
T 2fh5_B 7 QRAVLFVGL---CDSGKTLLFVRLLT 29 (214)
T ss_dssp -CEEEEECS---TTSSHHHHHHHHHH
T ss_pred CCEEEEECC---CCCCHHHHHHHHhC
Confidence 457899997 69999999987764
No 247
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=71.98 E-value=1.8 Score=41.15 Aligned_cols=20 Identities=25% Similarity=0.440 Sum_probs=17.5
Q ss_pred cCCCCchHHHHHHHHHHHhC
Q 017904 71 WGGNGKTPMVEFLAHCLADS 90 (364)
Q Consensus 71 vGGtGKTP~v~~L~~~L~~~ 90 (364)
..|+|||+++.++++.+..+
T Consensus 60 ~~G~GKT~L~~~~~~~~~~~ 79 (412)
T 1w5s_A 60 RVGIGKTTLAKFTVKRVSEA 79 (412)
T ss_dssp CCSSSHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHH
Confidence 38999999999999998763
No 248
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=71.87 E-value=2.3 Score=37.29 Aligned_cols=23 Identities=30% Similarity=0.530 Sum_probs=19.4
Q ss_pred cEEEEcCcccCCCCchHHHHHHHHHH
Q 017904 62 PVISVGNLTWGGNGKTPMVEFLAHCL 87 (364)
Q Consensus 62 PVIsVGNltvGGtGKTP~v~~L~~~L 87 (364)
.|+.+|. -||||||+...|++.|
T Consensus 7 ~I~l~G~---~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 7 NLILIGA---PGSGKGTQCEFIKKEY 29 (217)
T ss_dssp EEEEEEC---TTSSHHHHHHHHHHHH
T ss_pred EEEEECC---CCCCHHHHHHHHHHHh
Confidence 4666774 5999999999999988
No 249
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=71.81 E-value=2.1 Score=36.60 Aligned_cols=23 Identities=35% Similarity=0.458 Sum_probs=18.3
Q ss_pred cEEEEcCcccCCCCchHHHHHHHHHH
Q 017904 62 PVISVGNLTWGGNGKTPMVEFLAHCL 87 (364)
Q Consensus 62 PVIsVGNltvGGtGKTP~v~~L~~~L 87 (364)
-+..+|- -|+||||++..|+..+
T Consensus 9 ii~l~Gp---~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 9 LFIISAP---SGAGKTSLVRALVKAL 31 (205)
T ss_dssp EEEEECC---TTSCHHHHHHHHHHHS
T ss_pred EEEEECc---CCCCHHHHHHHHHhhC
Confidence 3556674 3999999999999876
No 250
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=71.29 E-value=1.9 Score=37.18 Aligned_cols=20 Identities=30% Similarity=0.584 Sum_probs=16.4
Q ss_pred EEEEcCcccCCCCchHHHHHHHH
Q 017904 63 VISVGNLTWGGNGKTPMVEFLAH 85 (364)
Q Consensus 63 VIsVGNltvGGtGKTP~v~~L~~ 85 (364)
|..+|.. ||||||+...|++
T Consensus 5 i~l~G~~---GsGKST~~~~La~ 24 (206)
T 1jjv_A 5 VGLTGGI---GSGKTTIANLFTD 24 (206)
T ss_dssp EEEECST---TSCHHHHHHHHHT
T ss_pred EEEECCC---CCCHHHHHHHHHH
Confidence 5567765 9999999988876
No 251
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=71.20 E-value=2.4 Score=35.67 Aligned_cols=23 Identities=26% Similarity=0.484 Sum_probs=18.5
Q ss_pred CCcEEEEcCcccCCCCchHHHHHHHH
Q 017904 60 PVPVISVGNLTWGGNGKTPMVEFLAH 85 (364)
Q Consensus 60 ~vPVIsVGNltvGGtGKTP~v~~L~~ 85 (364)
..-|++||. .|+|||+++..+..
T Consensus 48 ~~~i~vvG~---~g~GKSsll~~l~~ 70 (193)
T 2ged_A 48 QPSIIIAGP---QNSGKTSLLTLLTT 70 (193)
T ss_dssp CCEEEEECC---TTSSHHHHHHHHHH
T ss_pred CCEEEEECC---CCCCHHHHHHHHhc
Confidence 356889996 69999999987754
No 252
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=71.10 E-value=2 Score=36.78 Aligned_cols=23 Identities=17% Similarity=0.192 Sum_probs=19.1
Q ss_pred cEEEEcCcccCCCCchHHHHHHHHHH
Q 017904 62 PVISVGNLTWGGNGKTPMVEFLAHCL 87 (364)
Q Consensus 62 PVIsVGNltvGGtGKTP~v~~L~~~L 87 (364)
.|+.+|. -||||||++..|+..+
T Consensus 8 ~i~l~G~---~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 8 LIVLSGP---SGVGKGTVRKRIFEDP 30 (207)
T ss_dssp EEEEECS---TTSCHHHHHHHHHHCT
T ss_pred EEEEECC---CCCCHHHHHHHHHHhh
Confidence 4667775 4999999999998887
No 253
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=70.97 E-value=12 Score=37.36 Aligned_cols=46 Identities=24% Similarity=0.431 Sum_probs=30.6
Q ss_pred CCcEEEEcCcccCCCCchHHHHHHHHHHHhCCCceEEEec------CCCCCchHHHHH
Q 017904 60 PVPVISVGNLTWGGNGKTPMVEFLAHCLADSEISPLILTR------GYAGGDEVRMLE 111 (364)
Q Consensus 60 ~vPVIsVGNltvGGtGKTP~v~~L~~~L~~~g~kvaIlsR------GYg~GDE~~lla 111 (364)
+..++.+|. -|||||+++..|++.+ |.....+.- ||-+.|..-.+.
T Consensus 50 ~~~iLl~Gp---pGtGKT~lar~lA~~l---~~~~~~v~~~~~~~~g~vG~d~e~~lr 101 (444)
T 1g41_A 50 PKNILMIGP---TGVGKTEIARRLAKLA---NAPFIKVEATKFTEVGYVGKEVDSIIR 101 (444)
T ss_dssp CCCEEEECC---TTSSHHHHHHHHHHHT---TCCEEEEEGGGGC----CCCCTHHHHH
T ss_pred CceEEEEcC---CCCCHHHHHHHHHHHc---CCCceeecchhhcccceeeccHHHHHH
Confidence 346889996 5999999999999988 455555543 676544333333
No 254
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=70.88 E-value=2.6 Score=35.09 Aligned_cols=24 Identities=21% Similarity=0.296 Sum_probs=20.0
Q ss_pred CCcEEEEcCcccCCCCchHHHHHHHHH
Q 017904 60 PVPVISVGNLTWGGNGKTPMVEFLAHC 86 (364)
Q Consensus 60 ~vPVIsVGNltvGGtGKTP~v~~L~~~ 86 (364)
.+-|+++|. .|+|||+++..|+..
T Consensus 7 ~~ki~v~G~---~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 7 SYKTVLLGE---SSVGKSSIVLRLTKD 30 (208)
T ss_dssp SEEEEEECC---TTSSHHHHHHHHHHS
T ss_pred ceEEEEECC---CCCCHHHHHHHHHhC
Confidence 467999997 599999999988763
No 255
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=70.63 E-value=3.7 Score=44.08 Aligned_cols=38 Identities=21% Similarity=0.189 Sum_probs=29.7
Q ss_pred EEEEcCcccCCCCchHHHHHHHHHHHh-CCCceEEEecCCCC
Q 017904 63 VISVGNLTWGGNGKTPMVEFLAHCLAD-SEISPLILTRGYAG 103 (364)
Q Consensus 63 VIsVGNltvGGtGKTP~v~~L~~~L~~-~g~kvaIlsRGYg~ 103 (364)
+++.|. -|||||+++..++.+|.+ .|.++.+++.-..+
T Consensus 374 ~lI~Gp---pGTGKT~ti~~~i~~l~~~~~~~ilv~a~tn~A 412 (800)
T 2wjy_A 374 SLIQGP---PGTGKTVTSATIVYHLARQGNGPVLVCAPSNIA 412 (800)
T ss_dssp EEEECC---TTSCHHHHHHHHHHHHHTTCSSCEEEEESSHHH
T ss_pred EEEEcC---CCCCHHHHHHHHHHHHHHcCCCcEEEEcCcHHH
Confidence 456663 699999999999999876 68899888765443
No 256
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=70.23 E-value=2.3 Score=42.57 Aligned_cols=38 Identities=16% Similarity=-0.049 Sum_probs=30.2
Q ss_pred EEEEcCcccCCCCchHHHHHHHHHHHhC-CCceEEEecCCC
Q 017904 63 VISVGNLTWGGNGKTPMVEFLAHCLADS-EISPLILTRGYA 102 (364)
Q Consensus 63 VIsVGNltvGGtGKTP~v~~L~~~L~~~-g~kvaIlsRGYg 102 (364)
++.|+.= -|+|||+++..++..+..+ |.+|+++|-+-.
T Consensus 244 l~li~G~--pG~GKT~lal~~a~~~a~~~g~~vl~~s~E~s 282 (503)
T 1q57_A 244 VIMVTSG--SGMVMSTFVRQQALQWGTAMGKKVGLAMLEES 282 (503)
T ss_dssp EEEEEES--SCHHHHHHHHHHHHHHTTTSCCCEEEEESSSC
T ss_pred EEEEeec--CCCCchHHHHHHHHHHHHhcCCcEEEEeccCC
Confidence 4444443 5999999999999988776 999999987653
No 257
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=70.18 E-value=1.6 Score=39.35 Aligned_cols=28 Identities=32% Similarity=0.455 Sum_probs=23.0
Q ss_pred CCCCcEEEEcCcccCCCCchHHHHHHHHHHH
Q 017904 58 RLPVPVISVGNLTWGGNGKTPMVEFLAHCLA 88 (364)
Q Consensus 58 ~~~vPVIsVGNltvGGtGKTP~v~~L~~~L~ 88 (364)
+.+.+|+..|. -|||||.++..+++.+.
T Consensus 42 ~~~~~vll~G~---~GtGKT~la~~la~~~~ 69 (268)
T 2r62_A 42 KIPKGVLLVGP---PGTGKTLLAKAVAGEAH 69 (268)
T ss_dssp CCCSCCCCBCS---SCSSHHHHHHHHHHHHT
T ss_pred CCCceEEEECC---CCCcHHHHHHHHHHHhC
Confidence 34557888886 59999999999999874
No 258
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=69.75 E-value=3.1 Score=34.29 Aligned_cols=22 Identities=27% Similarity=0.445 Sum_probs=18.3
Q ss_pred CCcEEEEcCcccCCCCchHHHHHHH
Q 017904 60 PVPVISVGNLTWGGNGKTPMVEFLA 84 (364)
Q Consensus 60 ~vPVIsVGNltvGGtGKTP~v~~L~ 84 (364)
.+-|++||+ .|+|||+++..+.
T Consensus 8 ~~ki~v~G~---~~~GKssl~~~~~ 29 (182)
T 3bwd_D 8 FIKCVTVGD---GAVGKTCLLISYT 29 (182)
T ss_dssp CCEEEEECS---TTSSHHHHHHHHH
T ss_pred eEEEEEECC---CCCCHHHHHHHHh
Confidence 467999997 6999999987665
No 259
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=69.62 E-value=3.1 Score=38.72 Aligned_cols=25 Identities=24% Similarity=0.325 Sum_probs=18.6
Q ss_pred CCcEEEEcCcccCCCCchHHHHHHHHHH
Q 017904 60 PVPVISVGNLTWGGNGKTPMVEFLAHCL 87 (364)
Q Consensus 60 ~vPVIsVGNltvGGtGKTP~v~~L~~~L 87 (364)
|.-||.+| . -||||||++..|++.+
T Consensus 33 ~~livl~G-~--sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 33 PTAFLLGG-Q--PGSGKTSLRSAIFEET 57 (287)
T ss_dssp CEEEEEEC-C--TTSCTHHHHHHHHHHT
T ss_pred CeEEEEEC-C--CCCCHHHHHHHHHHHh
Confidence 33344555 4 5999999999998877
No 260
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=69.51 E-value=2.5 Score=35.21 Aligned_cols=20 Identities=25% Similarity=0.434 Sum_probs=17.0
Q ss_pred cEEEEcCcccCCCCchHHHHHHH
Q 017904 62 PVISVGNLTWGGNGKTPMVEFLA 84 (364)
Q Consensus 62 PVIsVGNltvGGtGKTP~v~~L~ 84 (364)
.|+++|. .|+|||+++..++
T Consensus 3 ki~v~G~---~~~GKSsli~~l~ 22 (190)
T 2cxx_A 3 TIIFAGR---SNVGKSTLIYRLT 22 (190)
T ss_dssp EEEEEEB---TTSSHHHHHHHHH
T ss_pred EEEEECC---CCCCHHHHHHHHh
Confidence 4788996 6999999998875
No 261
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=69.43 E-value=2.8 Score=33.77 Aligned_cols=21 Identities=38% Similarity=0.566 Sum_probs=17.7
Q ss_pred CcEEEEcCcccCCCCchHHHHHHH
Q 017904 61 VPVISVGNLTWGGNGKTPMVEFLA 84 (364)
Q Consensus 61 vPVIsVGNltvGGtGKTP~v~~L~ 84 (364)
.-|+++|+ .|+|||+++..+.
T Consensus 5 ~~i~v~G~---~~~GKssl~~~l~ 25 (168)
T 1u8z_A 5 HKVIMVGS---GGVGKSALTLQFM 25 (168)
T ss_dssp EEEEEECS---TTSSHHHHHHHHH
T ss_pred EEEEEECC---CCCCHHHHHHHHH
Confidence 46889997 6999999988776
No 262
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=69.34 E-value=5.6 Score=35.42 Aligned_cols=35 Identities=11% Similarity=0.134 Sum_probs=27.9
Q ss_pred EEEEcCcccCCCCchHHHHHHHHHHHhCCCceEEEecC
Q 017904 63 VISVGNLTWGGNGKTPMVEFLAHCLADSEISPLILTRG 100 (364)
Q Consensus 63 VIsVGNltvGGtGKTP~v~~L~~~L~~~g~kvaIlsRG 100 (364)
....|.. |+|||+.++..+..+..+|.+|.+++-.
T Consensus 23 ~fiyG~M---gsGKTt~Ll~~i~n~~~~~~kvl~~kp~ 57 (195)
T 1w4r_A 23 QVILGPM---FSGKSTELMRRVRRFQIAQYKCLVIKYA 57 (195)
T ss_dssp EEEEECT---TSCHHHHHHHHHHHHHHTTCCEEEEEET
T ss_pred EEEECCC---CCcHHHHHHHHHHHHHHcCCeEEEEccc
Confidence 4457765 9999988887888778889999999743
No 263
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=69.21 E-value=4.2 Score=39.58 Aligned_cols=34 Identities=21% Similarity=0.173 Sum_probs=27.8
Q ss_pred cEEEEcCcccCCCCchHHHHHHHHHHHhCCCceEEEe
Q 017904 62 PVISVGNLTWGGNGKTPMVEFLAHCLADSEISPLILT 98 (364)
Q Consensus 62 PVIsVGNltvGGtGKTP~v~~L~~~L~~~g~kvaIls 98 (364)
=+.++|. -|||||.++..++..+.+.|.++.|+-
T Consensus 55 h~~i~G~---tGsGKs~~~~~li~~~~~~g~~viv~D 88 (437)
T 1e9r_A 55 HLLVNGA---TGTGKSVLLRELAYTGLLRGDRMVIVD 88 (437)
T ss_dssp CEEEEEC---TTSSHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred eEEEECC---CCCCHHHHHHHHHHHHHHCCCcEEEEe
Confidence 4677775 499999999999998888888877774
No 264
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=69.13 E-value=4.6 Score=39.84 Aligned_cols=30 Identities=20% Similarity=0.078 Sum_probs=26.1
Q ss_pred CCCCchHHHHHHHHHHHh-CCCceEEEecCC
Q 017904 72 GGNGKTPMVEFLAHCLAD-SEISPLILTRGY 101 (364)
Q Consensus 72 GGtGKTP~v~~L~~~L~~-~g~kvaIlsRGY 101 (364)
-|+|||+++..++..... .|.+|+++|-.-
T Consensus 209 pg~GKT~lal~ia~~~a~~~g~~vl~~slE~ 239 (444)
T 2q6t_A 209 PAMGKTAFALTIAQNAALKEGVGVGIYSLEM 239 (444)
T ss_dssp TTSCHHHHHHHHHHHHHHTTCCCEEEEESSS
T ss_pred CCCCHHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 599999999999998765 588999998874
No 265
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=69.11 E-value=4.7 Score=35.30 Aligned_cols=34 Identities=24% Similarity=0.235 Sum_probs=23.7
Q ss_pred EEEEcCcccCCCCchHHHHHHHHHHH-hCCCceEEEec
Q 017904 63 VISVGNLTWGGNGKTPMVEFLAHCLA-DSEISPLILTR 99 (364)
Q Consensus 63 VIsVGNltvGGtGKTP~v~~L~~~L~-~~g~kvaIlsR 99 (364)
+..+|- -|+||||++..++.... ..+..+.+++.
T Consensus 33 ~~l~Gp---nGsGKSTLl~~i~~~~~~~~~~~~~~~~~ 67 (251)
T 2ehv_A 33 VLLTGG---TGTGKTTFAAQFIYKGAEEYGEPGVFVTL 67 (251)
T ss_dssp EEEECC---TTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred EEEEeC---CCCCHHHHHHHHHHHHHHhCCCeEEEEEc
Confidence 455663 69999999999995433 44666666653
No 266
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=68.66 E-value=2.3 Score=35.79 Aligned_cols=22 Identities=36% Similarity=0.662 Sum_probs=18.5
Q ss_pred CcEEEEcCcccCCCCchHHHHHHHH
Q 017904 61 VPVISVGNLTWGGNGKTPMVEFLAH 85 (364)
Q Consensus 61 vPVIsVGNltvGGtGKTP~v~~L~~ 85 (364)
..|++||+ .|+|||+++..++.
T Consensus 3 ~kv~ivG~---~gvGKStLl~~l~~ 24 (184)
T 2zej_A 3 MKLMIVGN---TGSGKTTLLQQLMK 24 (184)
T ss_dssp CEEEEESC---TTSSHHHHHHHHTC
T ss_pred eEEEEECC---CCCCHHHHHHHHhc
Confidence 46899997 69999999987764
No 267
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=68.60 E-value=3.1 Score=37.31 Aligned_cols=34 Identities=21% Similarity=0.312 Sum_probs=23.3
Q ss_pred EEEcCcccCCCCchHHHHHHHHHHHhC-----CCceEEEecC
Q 017904 64 ISVGNLTWGGNGKTPMVEFLAHCLADS-----EISPLILTRG 100 (364)
Q Consensus 64 IsVGNltvGGtGKTP~v~~L~~~L~~~-----g~kvaIlsRG 100 (364)
-.+|.. ||||||++..|+..+-.- ..+++++.-+
T Consensus 29 gI~G~~---GsGKSTl~k~L~~~lG~~~~~~~~~~i~~v~~d 67 (245)
T 2jeo_A 29 GVSGGT---ASGKSTVCEKIMELLGQNEVEQRQRKVVILSQD 67 (245)
T ss_dssp EEECST---TSSHHHHHHHHHHHHTGGGSCGGGCSEEEEEGG
T ss_pred EEECCC---CCCHHHHHHHHHHHhchhcccccCCceEEEeCC
Confidence 355654 999999999999987321 1356676543
No 268
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=68.58 E-value=3.8 Score=35.79 Aligned_cols=26 Identities=31% Similarity=0.411 Sum_probs=21.4
Q ss_pred EEEEcCcccCCCCchHHHHHHHHHHHhCC
Q 017904 63 VISVGNLTWGGNGKTPMVEFLAHCLADSE 91 (364)
Q Consensus 63 VIsVGNltvGGtGKTP~v~~L~~~L~~~g 91 (364)
+..+|- =|+||||++..++..++..|
T Consensus 4 i~i~G~---nG~GKTTll~~l~g~~~~~G 29 (189)
T 2i3b_A 4 VFLTGP---PGVGKTTLIHKASEVLKSSG 29 (189)
T ss_dssp EEEESC---CSSCHHHHHHHHHHHHHHTT
T ss_pred EEEECC---CCChHHHHHHHHHhhcccCC
Confidence 446663 59999999999999998767
No 269
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=68.46 E-value=2.8 Score=41.60 Aligned_cols=32 Identities=22% Similarity=0.272 Sum_probs=23.1
Q ss_pred CcEEEEcCcccCCCCchHHHHHHHHHHHhCCCceEEEec
Q 017904 61 VPVISVGNLTWGGNGKTPMVEFLAHCLADSEISPLILTR 99 (364)
Q Consensus 61 vPVIsVGNltvGGtGKTP~v~~L~~~L~~~g~kvaIlsR 99 (364)
.|+|+|.+= -|||||+++..|++.+. ..|||-
T Consensus 2 ~~~i~i~Gp--tgsGKttla~~La~~~~-----~~iis~ 33 (409)
T 3eph_A 2 KKVIVIAGT--TGVGKSQLSIQLAQKFN-----GEVINS 33 (409)
T ss_dssp CEEEEEEEC--SSSSHHHHHHHHHHHHT-----EEEEEC
T ss_pred CcEEEEECc--chhhHHHHHHHHHHHCC-----CeEeec
Confidence 356655544 49999999999999884 246664
No 270
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=68.44 E-value=2.7 Score=34.60 Aligned_cols=23 Identities=26% Similarity=0.652 Sum_probs=18.8
Q ss_pred CCcEEEEcCcccCCCCchHHHHHHHH
Q 017904 60 PVPVISVGNLTWGGNGKTPMVEFLAH 85 (364)
Q Consensus 60 ~vPVIsVGNltvGGtGKTP~v~~L~~ 85 (364)
.+-|++||. .|+|||+++..+..
T Consensus 6 ~~ki~v~G~---~~~GKssl~~~l~~ 28 (178)
T 2hxs_A 6 QLKIVVLGD---GASGKTSLTTCFAQ 28 (178)
T ss_dssp EEEEEEECC---TTSSHHHHHHHHHG
T ss_pred eEEEEEECc---CCCCHHHHHHHHHh
Confidence 357899997 69999999987753
No 271
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=68.44 E-value=2.9 Score=34.31 Aligned_cols=22 Identities=27% Similarity=0.519 Sum_probs=18.3
Q ss_pred CcEEEEcCcccCCCCchHHHHHHHH
Q 017904 61 VPVISVGNLTWGGNGKTPMVEFLAH 85 (364)
Q Consensus 61 vPVIsVGNltvGGtGKTP~v~~L~~ 85 (364)
.-|++||. .|+|||+++..+..
T Consensus 10 ~~i~v~G~---~~~GKssli~~l~~ 31 (181)
T 2fn4_A 10 HKLVVVGG---GGVGKSALTIQFIQ 31 (181)
T ss_dssp EEEEEEEC---TTSSHHHHHHHHHH
T ss_pred eEEEEECC---CCCCHHHHHHHHHh
Confidence 46889997 59999999988764
No 272
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=68.25 E-value=29 Score=37.03 Aligned_cols=128 Identities=16% Similarity=0.156 Sum_probs=67.1
Q ss_pred cEEEEcCcccCCCCchHHHHHHHHHHHhCCCceEEEecCCCCCch-HHHHHHHhC--CCCEEEeccccchhH----HHhh
Q 017904 62 PVISVGNLTWGGNGKTPMVEFLAHCLADSEISPLILTRGYAGGDE-VRMLERHLL--ERPAKIGKNCINPKV----GSHL 134 (364)
Q Consensus 62 PVIsVGNltvGGtGKTP~v~~L~~~L~~~g~kvaIlsRGYg~GDE-~~lla~~~~--~~~v~v~~~~~~~~~----~~~~ 134 (364)
-+++.|- -|||||-.....+-...+.|.++.|++----=..+ .-.+.+.++ ++.|.+-.+...... ...+
T Consensus 391 ~~Ll~a~---TGSGKTlvall~il~~l~~g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l 467 (780)
T 1gm5_A 391 NRLLQGD---VGSGKTVVAQLAILDNYEAGFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGL 467 (780)
T ss_dssp CCEEECC---SSSSHHHHHHHHHHHHHHHTSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHH
T ss_pred cEEEEcC---CCCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHH
Confidence 5677775 49999987665554444568899998743100011 111223333 333322222111111 1123
Q ss_pred hcCCCCEEEEcCC-CCCccccCceeEEEEeCCCCCCCCccccCCCCCCchhhhccccEEEEcCCc
Q 017904 135 KSGKIGAVILDDG-MQHWSLRRDLEIVMVNGLMPWGNRKLLPLGPLREPLMALKRADIAVVHHAD 198 (364)
Q Consensus 135 ~~~~~dviIlDDg-fQh~~L~rdl~Ivl~Da~~~~gn~~~lPaG~LREp~~~L~rAd~ivvtk~d 198 (364)
.+.++|++|.=-+ ||+.---.+++++|+|-.+-||... ...+++. ....++++.|.+.
T Consensus 468 ~~g~~~IvVgT~~ll~~~~~~~~l~lVVIDEaHr~g~~q---r~~l~~~---~~~~~vL~mSATp 526 (780)
T 1gm5_A 468 RNGQIDVVIGTHALIQEDVHFKNLGLVIIDEQHRFGVKQ---REALMNK---GKMVDTLVMSATP 526 (780)
T ss_dssp HSSCCCEEEECTTHHHHCCCCSCCCEEEEESCCCC--------CCCCSS---SSCCCEEEEESSC
T ss_pred hcCCCCEEEECHHHHhhhhhccCCceEEecccchhhHHH---HHHHHHh---CCCCCEEEEeCCC
Confidence 3446899997644 3333334688999999877776533 2334432 2457888888753
No 273
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=68.16 E-value=3.1 Score=33.48 Aligned_cols=22 Identities=27% Similarity=0.543 Sum_probs=18.0
Q ss_pred CcEEEEcCcccCCCCchHHHHHHHH
Q 017904 61 VPVISVGNLTWGGNGKTPMVEFLAH 85 (364)
Q Consensus 61 vPVIsVGNltvGGtGKTP~v~~L~~ 85 (364)
.-|+++|+ .|+|||+++..+..
T Consensus 4 ~~i~v~G~---~~~GKSsli~~l~~ 25 (167)
T 1kao_A 4 YKVVVLGS---GGVGKSALTVQFVT 25 (167)
T ss_dssp EEEEEECC---TTSSHHHHHHHHHH
T ss_pred EEEEEECC---CCCCHHHHHHHHHc
Confidence 46899997 59999999887764
No 274
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=68.16 E-value=3.2 Score=33.56 Aligned_cols=21 Identities=29% Similarity=0.371 Sum_probs=17.6
Q ss_pred cEEEEcCcccCCCCchHHHHHHHH
Q 017904 62 PVISVGNLTWGGNGKTPMVEFLAH 85 (364)
Q Consensus 62 PVIsVGNltvGGtGKTP~v~~L~~ 85 (364)
.|+.+|. .|+|||+++..+..
T Consensus 2 ki~~~G~---~~~GKssl~~~l~~ 22 (164)
T 1r8s_A 2 RILMVGL---DAAGKTTILYKLKL 22 (164)
T ss_dssp EEEEECS---TTSSHHHHHHHHHH
T ss_pred EEEEECC---CCCCHHHHHHHHHc
Confidence 4789997 69999999988864
No 275
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=68.14 E-value=3.3 Score=38.46 Aligned_cols=26 Identities=27% Similarity=0.254 Sum_probs=22.5
Q ss_pred CCCcEEEEcCcccCCCCchHHHHHHHHHH
Q 017904 59 LPVPVISVGNLTWGGNGKTPMVEFLAHCL 87 (364)
Q Consensus 59 ~~vPVIsVGNltvGGtGKTP~v~~L~~~L 87 (364)
.+..|+..|. -|||||.++.+++..+
T Consensus 48 ~~~~vLL~Gp---~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 48 PSKGVLFYGP---PGCGKTLLAKAIANEC 73 (301)
T ss_dssp CCSEEEEECS---SSSSHHHHHHHHHHHT
T ss_pred CCceEEEECC---CCcCHHHHHHHHHHHh
Confidence 3557999996 5999999999999987
No 276
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=68.12 E-value=3.1 Score=34.26 Aligned_cols=22 Identities=23% Similarity=0.440 Sum_probs=18.3
Q ss_pred CCcEEEEcCcccCCCCchHHHHHHH
Q 017904 60 PVPVISVGNLTWGGNGKTPMVEFLA 84 (364)
Q Consensus 60 ~vPVIsVGNltvGGtGKTP~v~~L~ 84 (364)
.+.|++||. .|+|||+++..+.
T Consensus 12 ~~ki~v~G~---~~~GKSsli~~l~ 33 (181)
T 2efe_B 12 NAKLVLLGD---VGAGKSSLVLRFV 33 (181)
T ss_dssp EEEEEEECC---TTSCHHHHHHHHH
T ss_pred ceEEEEECc---CCCCHHHHHHHHH
Confidence 357899997 6999999998775
No 277
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=68.10 E-value=3.9 Score=38.50 Aligned_cols=36 Identities=17% Similarity=0.108 Sum_probs=27.0
Q ss_pred EEEEcCcccCCCCchHHHHHHHHHHHhC------CCceEEEecCC
Q 017904 63 VISVGNLTWGGNGKTPMVEFLAHCLADS------EISPLILTRGY 101 (364)
Q Consensus 63 VIsVGNltvGGtGKTP~v~~L~~~L~~~------g~kvaIlsRGY 101 (364)
+++.|. -|+|||+++..++...... |.++..++-.-
T Consensus 110 ~~i~G~---~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~ 151 (324)
T 2z43_A 110 TEFFGE---FGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEG 151 (324)
T ss_dssp EEEEES---TTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred EEEECC---CCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 455564 5999999999999876544 67888887653
No 278
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=67.90 E-value=3 Score=34.91 Aligned_cols=23 Identities=26% Similarity=0.530 Sum_probs=19.0
Q ss_pred CCcEEEEcCcccCCCCchHHHHHHHH
Q 017904 60 PVPVISVGNLTWGGNGKTPMVEFLAH 85 (364)
Q Consensus 60 ~vPVIsVGNltvGGtGKTP~v~~L~~ 85 (364)
.+.|++||+ .|+|||+++..++.
T Consensus 7 ~~ki~v~G~---~~vGKSsli~~l~~ 29 (184)
T 1m7b_A 7 KCKIVVVGD---SQCGKTALLHVFAK 29 (184)
T ss_dssp EEEEEEEES---TTSSHHHHHHHHHH
T ss_pred EEEEEEECC---CCCCHHHHHHHHhc
Confidence 357899997 69999999987764
No 279
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=67.64 E-value=3.5 Score=37.91 Aligned_cols=26 Identities=31% Similarity=0.395 Sum_probs=22.7
Q ss_pred CCCcEEEEcCcccCCCCchHHHHHHHHHH
Q 017904 59 LPVPVISVGNLTWGGNGKTPMVEFLAHCL 87 (364)
Q Consensus 59 ~~vPVIsVGNltvGGtGKTP~v~~L~~~L 87 (364)
.+.+|+..|. -|||||.++.++++.+
T Consensus 37 ~~~~vll~G~---~GtGKT~la~~i~~~~ 62 (324)
T 1hqc_A 37 PLEHLLLFGP---PGLGKTTLAHVIAHEL 62 (324)
T ss_dssp CCCCCEEECC---TTCCCHHHHHHHHHHH
T ss_pred CCCcEEEECC---CCCCHHHHHHHHHHHh
Confidence 4568999996 6999999999999987
No 280
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=67.55 E-value=3.1 Score=35.14 Aligned_cols=23 Identities=22% Similarity=0.362 Sum_probs=19.0
Q ss_pred CCcEEEEcCcccCCCCchHHHHHHHH
Q 017904 60 PVPVISVGNLTWGGNGKTPMVEFLAH 85 (364)
Q Consensus 60 ~vPVIsVGNltvGGtGKTP~v~~L~~ 85 (364)
.+.|++||. .|+|||+++..++.
T Consensus 21 ~~ki~vvG~---~~vGKTsLi~~l~~ 43 (187)
T 3c5c_A 21 EVNLAILGR---RGAGKSALTVKFLT 43 (187)
T ss_dssp EEEEEEECC---TTSSHHHHHHHHHH
T ss_pred eEEEEEECC---CCCcHHHHHHHHHh
Confidence 367999997 69999999887753
No 281
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=67.55 E-value=4 Score=43.81 Aligned_cols=42 Identities=19% Similarity=0.162 Sum_probs=31.6
Q ss_pred cEEEEcCcccCCCCchHHHHHHHHHHHh-CCCceEEEecCCCCCch
Q 017904 62 PVISVGNLTWGGNGKTPMVEFLAHCLAD-SEISPLILTRGYAGGDE 106 (364)
Q Consensus 62 PVIsVGNltvGGtGKTP~v~~L~~~L~~-~g~kvaIlsRGYg~GDE 106 (364)
.+++.|. -|||||.++..++.+|.+ .+.++.+++.--.+-|+
T Consensus 377 ~~lI~Gp---pGTGKT~~i~~~i~~l~~~~~~~ILv~a~tn~A~d~ 419 (802)
T 2xzl_A 377 LSLIQGP---PGTGKTVTSATIVYHLSKIHKDRILVCAPSNVAVDH 419 (802)
T ss_dssp EEEEECS---TTSSHHHHHHHHHHHHHHHHCCCEEEEESSHHHHHH
T ss_pred CEEEECC---CCCCHHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHH
Confidence 3567774 699999999999988765 67899998865444444
No 282
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=67.54 E-value=5 Score=37.66 Aligned_cols=37 Identities=30% Similarity=0.451 Sum_probs=27.0
Q ss_pred CCCCCcEEEEcCcccCCCCchHHHHHHHHHHHhCCCceEEE
Q 017904 57 HRLPVPVISVGNLTWGGNGKTPMVEFLAHCLADSEISPLIL 97 (364)
Q Consensus 57 ~~~~vPVIsVGNltvGGtGKTP~v~~L~~~L~~~g~kvaIl 97 (364)
.++|- ++..|- -|||||+++..+++.+...+.+..++
T Consensus 44 g~~~~-~ll~Gp---~G~GKTtla~~la~~l~~~~~~~~~~ 80 (340)
T 1sxj_C 44 GKLPH-LLFYGP---PGTGKTSTIVALAREIYGKNYSNMVL 80 (340)
T ss_dssp TCCCC-EEEECS---SSSSHHHHHHHHHHHHHTTSHHHHEE
T ss_pred CCCce-EEEECC---CCCCHHHHHHHHHHHHcCCCccceEE
Confidence 34443 788886 59999999999999997554444444
No 283
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=67.30 E-value=3.2 Score=35.07 Aligned_cols=22 Identities=32% Similarity=0.342 Sum_probs=18.3
Q ss_pred CcEEEEcCcccCCCCchHHHHHHHH
Q 017904 61 VPVISVGNLTWGGNGKTPMVEFLAH 85 (364)
Q Consensus 61 vPVIsVGNltvGGtGKTP~v~~L~~ 85 (364)
+.|++||+ .|+|||+++..++.
T Consensus 21 ~ki~ivG~---~~vGKSsL~~~~~~ 42 (184)
T 3ihw_A 21 LKVGIVGN---LSSGKSALVHRYLT 42 (184)
T ss_dssp EEEEEECC---TTSCHHHHHHHHHH
T ss_pred eEEEEECC---CCCCHHHHHHHHhc
Confidence 57999997 69999999977653
No 284
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=67.29 E-value=3 Score=36.37 Aligned_cols=20 Identities=30% Similarity=0.572 Sum_probs=15.3
Q ss_pred EEEEcCcccCCCCchHHHHHHHH
Q 017904 63 VISVGNLTWGGNGKTPMVEFLAH 85 (364)
Q Consensus 63 VIsVGNltvGGtGKTP~v~~L~~ 85 (364)
|..+|.. ||||||+...|++
T Consensus 7 I~i~G~~---GSGKST~~~~L~~ 26 (218)
T 1vht_A 7 VALTGGI---GSGKSTVANAFAD 26 (218)
T ss_dssp EEEECCT---TSCHHHHHHHHHH
T ss_pred EEEECCC---CCCHHHHHHHHHH
Confidence 4455543 9999999998876
No 285
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=67.22 E-value=3.1 Score=34.32 Aligned_cols=21 Identities=24% Similarity=0.412 Sum_probs=17.6
Q ss_pred CcEEEEcCcccCCCCchHHHHHHH
Q 017904 61 VPVISVGNLTWGGNGKTPMVEFLA 84 (364)
Q Consensus 61 vPVIsVGNltvGGtGKTP~v~~L~ 84 (364)
..|+.||. .|+|||+++..++
T Consensus 4 ~~v~lvG~---~gvGKStL~~~l~ 24 (165)
T 2wji_A 4 YEIALIGN---PNVGKSTIFNALT 24 (165)
T ss_dssp EEEEEECS---TTSSHHHHHHHHH
T ss_pred cEEEEECC---CCCCHHHHHHHHh
Confidence 35789997 6999999998875
No 286
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=67.19 E-value=3.1 Score=33.75 Aligned_cols=22 Identities=32% Similarity=0.480 Sum_probs=18.2
Q ss_pred CcEEEEcCcccCCCCchHHHHHHHH
Q 017904 61 VPVISVGNLTWGGNGKTPMVEFLAH 85 (364)
Q Consensus 61 vPVIsVGNltvGGtGKTP~v~~L~~ 85 (364)
.-|+++|. .|+|||+++..++.
T Consensus 4 ~~i~v~G~---~~~GKssli~~l~~ 25 (172)
T 2erx_A 4 YRVAVFGA---GGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEEECC---TTSSHHHHHHHHHT
T ss_pred eEEEEECC---CCCCHHHHHHHHHc
Confidence 46889997 69999999987763
No 287
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=67.15 E-value=3.8 Score=35.59 Aligned_cols=25 Identities=28% Similarity=0.460 Sum_probs=21.2
Q ss_pred CcEEEEcCcccCCCCchHHHHHHHHHHH
Q 017904 61 VPVISVGNLTWGGNGKTPMVEFLAHCLA 88 (364)
Q Consensus 61 vPVIsVGNltvGGtGKTP~v~~L~~~L~ 88 (364)
.+++.||- -|+||||++..|++.+.
T Consensus 5 ~~i~lvGp---sGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 5 RPVVLSGP---SGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp CCEEEECC---TTSSHHHHHHHHHHHHT
T ss_pred CEEEEECC---CCCCHHHHHHHHHhhCc
Confidence 47888884 59999999999999874
No 288
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=67.12 E-value=9.5 Score=36.08 Aligned_cols=34 Identities=26% Similarity=0.377 Sum_probs=26.7
Q ss_pred CCCcEEEEcCcccCCCCchHHHHHHHHHHHhCCCceEEEe
Q 017904 59 LPVPVISVGNLTWGGNGKTPMVEFLAHCLADSEISPLILT 98 (364)
Q Consensus 59 ~~vPVIsVGNltvGGtGKTP~v~~L~~~L~~~g~kvaIls 98 (364)
.+.+|+..|. -|||||.++..+++.+ |.....+.
T Consensus 50 ~~~~vll~Gp---pGtGKT~la~~ia~~~---~~~~~~~~ 83 (363)
T 3hws_A 50 GKSNILLIGP---TGSGKTLLAETLARLL---DVPFTMAD 83 (363)
T ss_dssp CCCCEEEECC---TTSSHHHHHHHHHHHT---TCCEEEEE
T ss_pred CCCeEEEECC---CCCCHHHHHHHHHHHc---CCCEEEec
Confidence 4568999996 5999999999999998 44444443
No 289
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=66.96 E-value=2.4 Score=35.00 Aligned_cols=22 Identities=14% Similarity=0.357 Sum_probs=18.4
Q ss_pred CcEEEEcCcccCCCCchHHHHHHHH
Q 017904 61 VPVISVGNLTWGGNGKTPMVEFLAH 85 (364)
Q Consensus 61 vPVIsVGNltvGGtGKTP~v~~L~~ 85 (364)
..|++||+ .|+|||+++..++.
T Consensus 8 ~ki~~vG~---~~vGKTsli~~l~~ 29 (178)
T 2iwr_A 8 LRLGVLGD---ARSGKSSLIHRFLT 29 (178)
T ss_dssp EEEEEECC---GGGCHHHHHHHHHH
T ss_pred eEEEEECC---CCCCHHHHHHHHHh
Confidence 57899997 59999999887754
No 290
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=66.88 E-value=3.6 Score=35.74 Aligned_cols=23 Identities=22% Similarity=0.264 Sum_probs=18.6
Q ss_pred cEEEEcCcccCCCCchHHHHHHHHHH
Q 017904 62 PVISVGNLTWGGNGKTPMVEFLAHCL 87 (364)
Q Consensus 62 PVIsVGNltvGGtGKTP~v~~L~~~L 87 (364)
-|..+|.. |||||++...|++.+
T Consensus 5 ~i~i~G~~---gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 5 NIALDGPA---AAGKSTIAKRVASEL 27 (219)
T ss_dssp CEEEECCT---TSSHHHHHHHHHHHT
T ss_pred EEEEECCC---CCCHHHHHHHHHHhc
Confidence 46667765 999999999988876
No 291
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=66.85 E-value=5.4 Score=38.00 Aligned_cols=35 Identities=20% Similarity=0.257 Sum_probs=26.7
Q ss_pred CCCCcEEEEcCcccCCCCchHHHHHHHHHHHhCCCceEEEe
Q 017904 58 RLPVPVISVGNLTWGGNGKTPMVEFLAHCLADSEISPLILT 98 (364)
Q Consensus 58 ~~~vPVIsVGNltvGGtGKTP~v~~L~~~L~~~g~kvaIls 98 (364)
+.+.+|+..|. -|||||.++.++++.+ |.....++
T Consensus 115 ~~~~~vLl~Gp---pGtGKT~la~aia~~~---~~~~~~i~ 149 (357)
T 3d8b_A 115 GPPKGILLFGP---PGTGKTLIGKCIASQS---GATFFSIS 149 (357)
T ss_dssp SCCSEEEEESS---TTSSHHHHHHHHHHHT---TCEEEEEE
T ss_pred CCCceEEEECC---CCCCHHHHHHHHHHHc---CCeEEEEe
Confidence 44668999997 5999999999999876 44544443
No 292
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=66.79 E-value=3.7 Score=37.44 Aligned_cols=26 Identities=27% Similarity=0.286 Sum_probs=22.4
Q ss_pred CCCcEEEEcCcccCCCCchHHHHHHHHHH
Q 017904 59 LPVPVISVGNLTWGGNGKTPMVEFLAHCL 87 (364)
Q Consensus 59 ~~vPVIsVGNltvGGtGKTP~v~~L~~~L 87 (364)
.+.+|+..|- -|||||+++..+++.+
T Consensus 53 ~~~~vll~Gp---~GtGKT~la~~la~~~ 78 (297)
T 3b9p_A 53 PAKGLLLFGP---PGNGKTLLARAVATEC 78 (297)
T ss_dssp CCSEEEEESS---SSSCHHHHHHHHHHHT
T ss_pred CCCeEEEECc---CCCCHHHHHHHHHHHh
Confidence 3568999996 5999999999999877
No 293
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=66.59 E-value=3.4 Score=33.33 Aligned_cols=22 Identities=23% Similarity=0.542 Sum_probs=18.1
Q ss_pred CcEEEEcCcccCCCCchHHHHHHHH
Q 017904 61 VPVISVGNLTWGGNGKTPMVEFLAH 85 (364)
Q Consensus 61 vPVIsVGNltvGGtGKTP~v~~L~~ 85 (364)
..|+++|. .|+|||+++..+..
T Consensus 4 ~ki~v~G~---~~~GKssli~~l~~ 25 (167)
T 1c1y_A 4 YKLVVLGS---GGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEEEECS---TTSSHHHHHHHHHH
T ss_pred eEEEEECC---CCCCHHHHHHHHHc
Confidence 46889997 59999999888763
No 294
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=66.47 E-value=3.4 Score=35.16 Aligned_cols=24 Identities=17% Similarity=0.279 Sum_probs=20.0
Q ss_pred cEEEEcCcccCCCCchHHHHHHHHHHH
Q 017904 62 PVISVGNLTWGGNGKTPMVEFLAHCLA 88 (364)
Q Consensus 62 PVIsVGNltvGGtGKTP~v~~L~~~L~ 88 (364)
.++.+|- -|+||||++..|++.+.
T Consensus 7 ~i~i~Gp---sGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 7 TLVLLGA---HGVGRRHIKNTLITKHP 30 (180)
T ss_dssp EEEEECC---TTSSHHHHHHHHHHHCT
T ss_pred EEEEECC---CCCCHHHHHHHHHhhCC
Confidence 5777784 59999999999998774
No 295
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=66.40 E-value=2.4 Score=37.05 Aligned_cols=24 Identities=21% Similarity=0.218 Sum_probs=18.9
Q ss_pred cEEEEcCcccCCCCchHHHHHHHHHHH
Q 017904 62 PVISVGNLTWGGNGKTPMVEFLAHCLA 88 (364)
Q Consensus 62 PVIsVGNltvGGtGKTP~v~~L~~~L~ 88 (364)
.++.+|- -|+||||++..|++.+.
T Consensus 10 ~i~l~Gp---sGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 10 LIVLSGP---SGVGKGTVREAVFKDPE 33 (208)
T ss_dssp EEEEECC---TTSCHHHHHHHHHHSTT
T ss_pred EEEEECc---CCCCHHHHHHHHHhhCC
Confidence 4556663 49999999999998874
No 296
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=66.36 E-value=3.2 Score=37.48 Aligned_cols=24 Identities=21% Similarity=0.333 Sum_probs=18.5
Q ss_pred cEEEEcCcccCCCCchHHHHHHHHHHH
Q 017904 62 PVISVGNLTWGGNGKTPMVEFLAHCLA 88 (364)
Q Consensus 62 PVIsVGNltvGGtGKTP~v~~L~~~L~ 88 (364)
-++.+| . -||||||+...|++.+.
T Consensus 34 ~i~l~G-~--~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 34 AILLGG-Q--SGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp EEEEES-C--GGGTTHHHHHHHHHHTT
T ss_pred EEEEEC-C--CCCCHHHHHHHHHHhcC
Confidence 344555 4 59999999999998873
No 297
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=66.34 E-value=3.5 Score=33.31 Aligned_cols=21 Identities=19% Similarity=0.431 Sum_probs=17.5
Q ss_pred CcEEEEcCcccCCCCchHHHHHHH
Q 017904 61 VPVISVGNLTWGGNGKTPMVEFLA 84 (364)
Q Consensus 61 vPVIsVGNltvGGtGKTP~v~~L~ 84 (364)
+-|+++|. .|+|||+++..+.
T Consensus 4 ~~i~v~G~---~~~GKssli~~l~ 24 (170)
T 1ek0_A 4 IKLVLLGE---AAVGKSSIVLRFV 24 (170)
T ss_dssp EEEEEECS---TTSSHHHHHHHHH
T ss_pred EEEEEECC---CCCCHHHHHHHHh
Confidence 45889997 5999999998775
No 298
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=66.33 E-value=3.5 Score=34.35 Aligned_cols=23 Identities=22% Similarity=0.404 Sum_probs=18.2
Q ss_pred CCcEEEEcCcccCCCCchHHHHHHHH
Q 017904 60 PVPVISVGNLTWGGNGKTPMVEFLAH 85 (364)
Q Consensus 60 ~vPVIsVGNltvGGtGKTP~v~~L~~ 85 (364)
...|++||. .|+|||+++.++..
T Consensus 14 ~~ki~vvG~---~~~GKssL~~~l~~ 36 (198)
T 3t1o_A 14 NFKIVYYGP---GLSGKTTNLKWIYS 36 (198)
T ss_dssp EEEEEEECS---TTSSHHHHHHHHHH
T ss_pred ccEEEEECC---CCCCHHHHHHHHHh
Confidence 357999997 69999999865544
No 299
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=66.24 E-value=3.7 Score=34.44 Aligned_cols=23 Identities=30% Similarity=0.505 Sum_probs=19.3
Q ss_pred CCcEEEEcCcccCCCCchHHHHHHHH
Q 017904 60 PVPVISVGNLTWGGNGKTPMVEFLAH 85 (364)
Q Consensus 60 ~vPVIsVGNltvGGtGKTP~v~~L~~ 85 (364)
..-|++||. .|+|||+++..+..
T Consensus 8 ~~ki~vvG~---~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 8 DYRVVVFGA---GGVGKSSLVLRFVK 30 (199)
T ss_dssp CEEEEEEEC---TTSSHHHHHHHHHH
T ss_pred eeEEEEECC---CCCcHHHHHHHHHc
Confidence 457999997 69999999988765
No 300
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=66.24 E-value=3.4 Score=33.77 Aligned_cols=21 Identities=19% Similarity=0.393 Sum_probs=17.8
Q ss_pred CcEEEEcCcccCCCCchHHHHHHH
Q 017904 61 VPVISVGNLTWGGNGKTPMVEFLA 84 (364)
Q Consensus 61 vPVIsVGNltvGGtGKTP~v~~L~ 84 (364)
.-|++||. .|+|||+++..++
T Consensus 15 ~~i~v~G~---~~~GKssli~~l~ 35 (179)
T 2y8e_A 15 FKLVFLGE---QSVGKTSLITRFM 35 (179)
T ss_dssp EEEEEEES---TTSSHHHHHHHHH
T ss_pred eEEEEECC---CCCCHHHHHHHHH
Confidence 46899997 5999999998776
No 301
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=66.23 E-value=6.5 Score=37.50 Aligned_cols=34 Identities=15% Similarity=0.201 Sum_probs=26.0
Q ss_pred CCCCcEEEEcCcccCCCCchHHHHHHHHHHHhCCCceEEE
Q 017904 58 RLPVPVISVGNLTWGGNGKTPMVEFLAHCLADSEISPLIL 97 (364)
Q Consensus 58 ~~~vPVIsVGNltvGGtGKTP~v~~L~~~L~~~g~kvaIl 97 (364)
+.+..|+..|. -|||||.++.++++.+ +.....+
T Consensus 82 ~~~~~iLL~Gp---pGtGKT~la~ala~~~---~~~~~~v 115 (355)
T 2qp9_X 82 KPTSGILLYGP---PGTGKSYLAKAVATEA---NSTFFSV 115 (355)
T ss_dssp CCCCCEEEECS---TTSCHHHHHHHHHHHH---TCEEEEE
T ss_pred CCCceEEEECC---CCCcHHHHHHHHHHHh---CCCEEEe
Confidence 34457999996 5999999999999988 3444444
No 302
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=66.17 E-value=3.6 Score=37.19 Aligned_cols=24 Identities=42% Similarity=0.642 Sum_probs=18.6
Q ss_pred cEEEEcCcccCCCCchHHHHHHHHHH
Q 017904 62 PVISVGNLTWGGNGKTPMVEFLAHCL 87 (364)
Q Consensus 62 PVIsVGNltvGGtGKTP~v~~L~~~L 87 (364)
.+|.|-+- -||||||+...|++.|
T Consensus 28 ~~I~I~G~--~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 28 PVITVDGP--SGAGKGTLCKALAESL 51 (252)
T ss_dssp CEEEEECC--TTSSHHHHHHHHHHHT
T ss_pred cEEEEECC--CCCCHHHHHHHHHHhc
Confidence 45544444 4999999999999887
No 303
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=66.04 E-value=3.6 Score=33.40 Aligned_cols=23 Identities=30% Similarity=0.433 Sum_probs=18.6
Q ss_pred CCcEEEEcCcccCCCCchHHHHHHHH
Q 017904 60 PVPVISVGNLTWGGNGKTPMVEFLAH 85 (364)
Q Consensus 60 ~vPVIsVGNltvGGtGKTP~v~~L~~ 85 (364)
.+.|+++|. .|+|||+++..+..
T Consensus 6 ~~~i~v~G~---~~~GKssli~~l~~ 28 (170)
T 1z08_A 6 SFKVVLLGE---GCVGKTSLVLRYCE 28 (170)
T ss_dssp EEEEEEECC---TTSCHHHHHHHHHH
T ss_pred ceEEEEECc---CCCCHHHHHHHHHc
Confidence 357899997 69999999987653
No 304
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=65.88 E-value=4.7 Score=41.51 Aligned_cols=34 Identities=21% Similarity=0.150 Sum_probs=26.5
Q ss_pred cEEEEcCcccCCCCchHHHHHHHHHHHhCC-CceEEE
Q 017904 62 PVISVGNLTWGGNGKTPMVEFLAHCLADSE-ISPLIL 97 (364)
Q Consensus 62 PVIsVGNltvGGtGKTP~v~~L~~~L~~~g-~kvaIl 97 (364)
.+|.+-++ -||||||+...|++.|..+| +++.++
T Consensus 397 ~~I~l~Gl--sGSGKSTiA~~La~~L~~~G~~~~~~l 431 (573)
T 1m8p_A 397 FTIFLTGY--MNSGKDAIARALQVTLNQQGGRSVSLL 431 (573)
T ss_dssp EEEEEECS--TTSSHHHHHHHHHHHHHHHCSSCEEEE
T ss_pred eEEEeecC--CCCCHHHHHHHHHHHhcccCCceEEEE
Confidence 35556556 59999999999999998877 665555
No 305
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=65.79 E-value=3.5 Score=36.67 Aligned_cols=20 Identities=20% Similarity=0.411 Sum_probs=17.3
Q ss_pred cEEEEcCcccCCCCchHHHHHHH
Q 017904 62 PVISVGNLTWGGNGKTPMVEFLA 84 (364)
Q Consensus 62 PVIsVGNltvGGtGKTP~v~~L~ 84 (364)
.|++||+ .|+|||.++..++
T Consensus 15 KivlvGd---~~VGKTsLi~r~~ 34 (216)
T 4dkx_A 15 KLVFLGE---QSVGKTSLITRFM 34 (216)
T ss_dssp EEEEECS---TTSSHHHHHHHHH
T ss_pred EEEEECc---CCcCHHHHHHHHH
Confidence 6999998 6999999988665
No 306
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=65.60 E-value=4.4 Score=36.17 Aligned_cols=27 Identities=33% Similarity=0.412 Sum_probs=22.2
Q ss_pred CCCcEEEEcCcccCCCCchHHHHHHHHHHH
Q 017904 59 LPVPVISVGNLTWGGNGKTPMVEFLAHCLA 88 (364)
Q Consensus 59 ~~vPVIsVGNltvGGtGKTP~v~~L~~~L~ 88 (364)
.+..++.+|. -|||||+++..++..+.
T Consensus 48 ~~~g~ll~G~---~G~GKTtl~~~i~~~~~ 74 (254)
T 1ixz_A 48 IPKGVLLVGP---PGVGKTHLARAVAGEAR 74 (254)
T ss_dssp CCSEEEEECC---TTSSHHHHHHHHHHHTT
T ss_pred CCCeEEEECC---CCCCHHHHHHHHHHHhC
Confidence 3444899996 59999999999998874
No 307
>1gg4_A UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase...; alpha/beta sheet; 2.30A {Escherichia coli} SCOP: c.98.1.1 c.59.1.1 c.72.2.1
Probab=65.57 E-value=5.3 Score=39.52 Aligned_cols=31 Identities=32% Similarity=0.542 Sum_probs=26.4
Q ss_pred CCcEEEEcCcccCCCCchHHHHHHHHHHHhCCCceE
Q 017904 60 PVPVISVGNLTWGGNGKTPMVEFLAHCLADSEISPL 95 (364)
Q Consensus 60 ~vPVIsVGNltvGGtGKTP~v~~L~~~L~~~g~kva 95 (364)
+.|||.|. |-.|||+++.+++..|++.| +++
T Consensus 99 ~~~vI~VT----GTnGKTTT~~~l~~iL~~~g-~~~ 129 (452)
T 1gg4_A 99 PARVVALT----GSSGKTSVKEMTAAILSQCG-NTL 129 (452)
T ss_dssp CCEEEEEE----CSSCHHHHHHHHHHHHTTTS-CEE
T ss_pred CCCEEEEe----CCCCcHHHHHHHHHHHHhcC-CEe
Confidence 46899887 78899999999999999988 444
No 308
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=65.51 E-value=3.5 Score=34.36 Aligned_cols=21 Identities=24% Similarity=0.412 Sum_probs=17.7
Q ss_pred CcEEEEcCcccCCCCchHHHHHHH
Q 017904 61 VPVISVGNLTWGGNGKTPMVEFLA 84 (364)
Q Consensus 61 vPVIsVGNltvGGtGKTP~v~~L~ 84 (364)
..|+.||. .|+|||+++..++
T Consensus 8 ~~i~lvG~---~gvGKStL~~~l~ 28 (188)
T 2wjg_A 8 YEIALIGN---PNVGKSTIFNALT 28 (188)
T ss_dssp EEEEEECS---TTSSHHHHHHHHH
T ss_pred CEEEEECC---CCCCHHHHHHHHh
Confidence 46889996 6999999998875
No 309
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=65.42 E-value=4.2 Score=34.14 Aligned_cols=22 Identities=32% Similarity=0.507 Sum_probs=18.4
Q ss_pred CCcEEEEcCcccCCCCchHHHHHHH
Q 017904 60 PVPVISVGNLTWGGNGKTPMVEFLA 84 (364)
Q Consensus 60 ~vPVIsVGNltvGGtGKTP~v~~L~ 84 (364)
...|+.||+ .|+|||+++..++
T Consensus 16 ~~ki~ivG~---~~vGKSsL~~~l~ 37 (181)
T 1fzq_A 16 EVRILLLGL---DNAGKTTLLKQLA 37 (181)
T ss_dssp CEEEEEEES---TTSSHHHHHHHHC
T ss_pred ceEEEEECC---CCCCHHHHHHHHh
Confidence 457999997 6999999988764
No 310
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=65.42 E-value=4.7 Score=35.79 Aligned_cols=23 Identities=17% Similarity=0.336 Sum_probs=18.4
Q ss_pred cEEEEcCcccCCCCchHHHHHHHHHH
Q 017904 62 PVISVGNLTWGGNGKTPMVEFLAHCL 87 (364)
Q Consensus 62 PVIsVGNltvGGtGKTP~v~~L~~~L 87 (364)
-|..+|.. |||||++...|++.|
T Consensus 18 ~i~i~G~~---gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 18 QIAIDGPA---SSGKSTVAKIIAKDF 40 (236)
T ss_dssp EEEEECSS---CSSHHHHHHHHHHHH
T ss_pred EEEEECCC---CCCHHHHHHHHHHHc
Confidence 35566654 999999999999877
No 311
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=65.41 E-value=3.7 Score=33.56 Aligned_cols=22 Identities=23% Similarity=0.410 Sum_probs=18.4
Q ss_pred CcEEEEcCcccCCCCchHHHHHHHH
Q 017904 61 VPVISVGNLTWGGNGKTPMVEFLAH 85 (364)
Q Consensus 61 vPVIsVGNltvGGtGKTP~v~~L~~ 85 (364)
.-|+++|. .|+|||+++..+..
T Consensus 16 ~~i~v~G~---~~~GKSsli~~l~~ 37 (179)
T 1z0f_A 16 FKYIIIGD---MGVGKSCLLHQFTE 37 (179)
T ss_dssp EEEEEECS---TTSSHHHHHHHHHH
T ss_pred eEEEEECC---CCCCHHHHHHHHHc
Confidence 56899996 69999999988764
No 312
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=64.98 E-value=3.8 Score=34.93 Aligned_cols=22 Identities=23% Similarity=0.543 Sum_probs=18.2
Q ss_pred CcEEEEcCcccCCCCchHHHHHHHH
Q 017904 61 VPVISVGNLTWGGNGKTPMVEFLAH 85 (364)
Q Consensus 61 vPVIsVGNltvGGtGKTP~v~~L~~ 85 (364)
..|++||. .|+|||+++..++.
T Consensus 6 ~kv~lvG~---~g~GKSTLl~~l~~ 27 (199)
T 2f9l_A 6 FKVVLIGD---SGVGKSNLLSRFTR 27 (199)
T ss_dssp EEEEEESS---TTSSHHHHHHHHHH
T ss_pred EEEEEECc---CCCCHHHHHHHHhc
Confidence 46789996 69999999988765
No 313
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=64.87 E-value=3.8 Score=33.74 Aligned_cols=21 Identities=38% Similarity=0.566 Sum_probs=18.0
Q ss_pred CcEEEEcCcccCCCCchHHHHHHH
Q 017904 61 VPVISVGNLTWGGNGKTPMVEFLA 84 (364)
Q Consensus 61 vPVIsVGNltvGGtGKTP~v~~L~ 84 (364)
..|+++|. .|+|||+++..++
T Consensus 19 ~ki~v~G~---~~~GKSsli~~l~ 39 (187)
T 2a9k_A 19 HKVIMVGS---GGVGKSALTLQFM 39 (187)
T ss_dssp EEEEEECS---TTSSHHHHHHHHH
T ss_pred eEEEEECC---CCCCHHHHHHHHh
Confidence 56899997 6999999988776
No 314
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=64.84 E-value=3.4 Score=33.47 Aligned_cols=20 Identities=25% Similarity=0.521 Sum_probs=16.7
Q ss_pred CcEEEEcCcccCCCCchHHHHHH
Q 017904 61 VPVISVGNLTWGGNGKTPMVEFL 83 (364)
Q Consensus 61 vPVIsVGNltvGGtGKTP~v~~L 83 (364)
..|+.||. .|+|||+++..+
T Consensus 3 ~ki~~vG~---~~~GKSsli~~l 22 (166)
T 3q72_A 3 YKVLLLGA---PGVGKSALARIF 22 (166)
T ss_dssp CEEEEEES---TTSSHHHHHHHH
T ss_pred EEEEEECC---CCCCHHHHHHHH
Confidence 36889997 699999998766
No 315
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=64.69 E-value=4.5 Score=36.78 Aligned_cols=28 Identities=36% Similarity=0.453 Sum_probs=22.7
Q ss_pred CCCCcEEEEcCcccCCCCchHHHHHHHHHHH
Q 017904 58 RLPVPVISVGNLTWGGNGKTPMVEFLAHCLA 88 (364)
Q Consensus 58 ~~~vPVIsVGNltvGGtGKTP~v~~L~~~L~ 88 (364)
+.+..|..+|. -|||||+++..++..+.
T Consensus 71 ~~~~gvll~Gp---~GtGKTtl~~~i~~~~~ 98 (278)
T 1iy2_A 71 RIPKGVLLVGP---PGVGKTHLARAVAGEAR 98 (278)
T ss_dssp CCCCEEEEECC---TTSSHHHHHHHHHHHTT
T ss_pred CCCCeEEEECC---CcChHHHHHHHHHHHcC
Confidence 33445899996 59999999999998874
No 316
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=64.60 E-value=3.5 Score=34.34 Aligned_cols=21 Identities=29% Similarity=0.343 Sum_probs=17.2
Q ss_pred CcEEEEcCcccCCCCchHHHHHHH
Q 017904 61 VPVISVGNLTWGGNGKTPMVEFLA 84 (364)
Q Consensus 61 vPVIsVGNltvGGtGKTP~v~~L~ 84 (364)
..|+++|. .|+|||+++..+.
T Consensus 24 ~~i~v~G~---~~~GKSsli~~l~ 44 (195)
T 3pqc_A 24 GEVAFVGR---SNVGKSSLLNALF 44 (195)
T ss_dssp CEEEEEEB---TTSSHHHHHHHHH
T ss_pred eEEEEECC---CCCCHHHHHHHHH
Confidence 35889997 5999999998764
No 317
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=64.51 E-value=3.9 Score=33.10 Aligned_cols=22 Identities=18% Similarity=0.481 Sum_probs=18.1
Q ss_pred CcEEEEcCcccCCCCchHHHHHHHH
Q 017904 61 VPVISVGNLTWGGNGKTPMVEFLAH 85 (364)
Q Consensus 61 vPVIsVGNltvGGtGKTP~v~~L~~ 85 (364)
+-|+++|. .|+|||+++..+..
T Consensus 4 ~~i~v~G~---~~~GKssli~~l~~ 25 (170)
T 1g16_A 4 MKILLIGD---SGVGKSCLLVRFVE 25 (170)
T ss_dssp EEEEEEES---TTSSHHHHHHHHHH
T ss_pred eEEEEECc---CCCCHHHHHHHHHh
Confidence 46889996 59999999988763
No 318
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=64.49 E-value=6.9 Score=35.50 Aligned_cols=32 Identities=28% Similarity=0.404 Sum_probs=24.7
Q ss_pred cCCCCCcEEEEcCcccCCCCchHHHHHHHHHHHhCC
Q 017904 56 KHRLPVPVISVGNLTWGGNGKTPMVEFLAHCLADSE 91 (364)
Q Consensus 56 ~~~~~vPVIsVGNltvGGtGKTP~v~~L~~~L~~~g 91 (364)
..+.+ +++..|. -|||||+++..+++.+...+
T Consensus 35 ~~~~~-~~ll~G~---~G~GKt~la~~l~~~l~~~~ 66 (319)
T 2chq_A 35 RKNIP-HLLFSGP---PGTGKTATAIALARDLFGEN 66 (319)
T ss_dssp TTCCC-CEEEESS---SSSSHHHHHHHHHHHHHTTC
T ss_pred CCCCC-eEEEECc---CCcCHHHHHHHHHHHhcCCc
Confidence 33444 4888896 69999999999999986544
No 319
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=64.48 E-value=6.7 Score=36.84 Aligned_cols=26 Identities=19% Similarity=0.180 Sum_probs=22.5
Q ss_pred CCCcEEEEcCcccCCCCchHHHHHHHHHH
Q 017904 59 LPVPVISVGNLTWGGNGKTPMVEFLAHCL 87 (364)
Q Consensus 59 ~~vPVIsVGNltvGGtGKTP~v~~L~~~L 87 (364)
.+..|+..|. -|||||.++.++++.+
T Consensus 44 ~~~~iLL~Gp---pGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 44 PWRGILLFGP---PGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCSEEEEESS---SSSCHHHHHHHHHHHT
T ss_pred CCceEEEECC---CCccHHHHHHHHHHHc
Confidence 3467999996 5999999999999988
No 320
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=64.44 E-value=4 Score=32.95 Aligned_cols=22 Identities=18% Similarity=0.378 Sum_probs=18.2
Q ss_pred CcEEEEcCcccCCCCchHHHHHHHH
Q 017904 61 VPVISVGNLTWGGNGKTPMVEFLAH 85 (364)
Q Consensus 61 vPVIsVGNltvGGtGKTP~v~~L~~ 85 (364)
.-|++||. .|+|||+++..+..
T Consensus 7 ~~i~v~G~---~~~GKssli~~l~~ 28 (170)
T 1r2q_A 7 FKLVLLGE---SAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEEECS---TTSSHHHHHHHHHH
T ss_pred EEEEEECC---CCCCHHHHHHHHHc
Confidence 46889997 59999999987754
No 321
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=64.32 E-value=7 Score=36.50 Aligned_cols=29 Identities=31% Similarity=0.418 Sum_probs=23.5
Q ss_pred CCCCcEEEEcCcccCCCCchHHHHHHHHHHHh
Q 017904 58 RLPVPVISVGNLTWGGNGKTPMVEFLAHCLAD 89 (364)
Q Consensus 58 ~~~vPVIsVGNltvGGtGKTP~v~~L~~~L~~ 89 (364)
+.+-.++..|. -|||||+++..+++.+..
T Consensus 36 ~~~~~~ll~G~---~G~GKT~la~~la~~l~~ 64 (373)
T 1jr3_A 36 RIHHAYLFSGT---RGVGKTSIARLLAKGLNC 64 (373)
T ss_dssp CCCSEEEEESC---TTSSHHHHHHHHHHHHSC
T ss_pred CCCeEEEEECC---CCCCHHHHHHHHHHHhCC
Confidence 34456788885 699999999999999853
No 322
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=64.31 E-value=3.9 Score=34.82 Aligned_cols=23 Identities=22% Similarity=0.494 Sum_probs=18.6
Q ss_pred CcEEEEcCcccCCCCchHHHHHHHHH
Q 017904 61 VPVISVGNLTWGGNGKTPMVEFLAHC 86 (364)
Q Consensus 61 vPVIsVGNltvGGtGKTP~v~~L~~~ 86 (364)
..|..||. .|+|||+++..++..
T Consensus 30 ~kv~lvG~---~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 30 FKVVLIGD---SGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEC---TTSSHHHHHHHHHHS
T ss_pred eEEEEECc---CCCCHHHHHHHHhcC
Confidence 46788996 699999999887653
No 323
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=64.28 E-value=3.3 Score=33.97 Aligned_cols=22 Identities=32% Similarity=0.516 Sum_probs=18.3
Q ss_pred CCcEEEEcCcccCCCCchHHHHHHH
Q 017904 60 PVPVISVGNLTWGGNGKTPMVEFLA 84 (364)
Q Consensus 60 ~vPVIsVGNltvGGtGKTP~v~~L~ 84 (364)
...|+++|. .|+|||+++..+.
T Consensus 8 ~~~i~v~G~---~~~GKSsli~~l~ 29 (182)
T 1ky3_A 8 ILKVIILGD---SGVGKTSLMHRYV 29 (182)
T ss_dssp EEEEEEECC---TTSSHHHHHHHHH
T ss_pred eEEEEEECC---CCCCHHHHHHHHH
Confidence 357889996 6999999998776
No 324
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=64.26 E-value=4 Score=34.60 Aligned_cols=22 Identities=23% Similarity=0.415 Sum_probs=18.4
Q ss_pred CcEEEEcCcccCCCCchHHHHHHHH
Q 017904 61 VPVISVGNLTWGGNGKTPMVEFLAH 85 (364)
Q Consensus 61 vPVIsVGNltvGGtGKTP~v~~L~~ 85 (364)
..|+.||. .|+|||+++..+..
T Consensus 24 ~ki~~vG~---~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 24 GKLLFLGL---DNAGKTTLLHMLKN 45 (190)
T ss_dssp CEEEEEES---TTSSHHHHHHHHHH
T ss_pred cEEEEECC---CCCCHHHHHHHHhc
Confidence 47899997 69999999887763
No 325
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=64.15 E-value=3.6 Score=34.51 Aligned_cols=21 Identities=19% Similarity=0.338 Sum_probs=17.6
Q ss_pred CcEEEEcCcccCCCCchHHHHHHH
Q 017904 61 VPVISVGNLTWGGNGKTPMVEFLA 84 (364)
Q Consensus 61 vPVIsVGNltvGGtGKTP~v~~L~ 84 (364)
.-|+++|. .|+|||+++..++
T Consensus 24 ~~i~v~G~---~~~GKSsli~~l~ 44 (195)
T 1svi_A 24 PEIALAGR---SNVGKSSFINSLI 44 (195)
T ss_dssp CEEEEEEB---TTSSHHHHHHHHH
T ss_pred CEEEEECC---CCCCHHHHHHHHh
Confidence 45889996 5999999998876
No 326
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=64.15 E-value=4 Score=33.44 Aligned_cols=21 Identities=33% Similarity=0.640 Sum_probs=17.7
Q ss_pred CcEEEEcCcccCCCCchHHHHHHH
Q 017904 61 VPVISVGNLTWGGNGKTPMVEFLA 84 (364)
Q Consensus 61 vPVIsVGNltvGGtGKTP~v~~L~ 84 (364)
.-|+++|. .|+|||+++..++
T Consensus 8 ~~i~v~G~---~~~GKSsli~~l~ 28 (177)
T 1wms_A 8 FKVILLGD---GGVGKSSLMNRYV 28 (177)
T ss_dssp EEEEEECC---TTSSHHHHHHHHH
T ss_pred eEEEEECC---CCCCHHHHHHHHH
Confidence 46889996 5999999998875
No 327
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=64.11 E-value=4.6 Score=34.66 Aligned_cols=24 Identities=25% Similarity=0.419 Sum_probs=19.1
Q ss_pred CCcEEEEcCcccCCCCchHHHHHHHHH
Q 017904 60 PVPVISVGNLTWGGNGKTPMVEFLAHC 86 (364)
Q Consensus 60 ~vPVIsVGNltvGGtGKTP~v~~L~~~ 86 (364)
..-|+.+|. .|+|||+++..++..
T Consensus 12 ~~~i~~~G~---~g~GKTsl~~~l~~~ 35 (218)
T 1nrj_B 12 QPSIIIAGP---QNSGKTSLLTLLTTD 35 (218)
T ss_dssp CCEEEEECS---TTSSHHHHHHHHHHS
T ss_pred CCEEEEECC---CCCCHHHHHHHHhcC
Confidence 346889996 699999999887653
No 328
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=64.00 E-value=4.1 Score=32.97 Aligned_cols=21 Identities=24% Similarity=0.409 Sum_probs=17.8
Q ss_pred CcEEEEcCcccCCCCchHHHHHHH
Q 017904 61 VPVISVGNLTWGGNGKTPMVEFLA 84 (364)
Q Consensus 61 vPVIsVGNltvGGtGKTP~v~~L~ 84 (364)
+-|+++|. .|+|||+++..+.
T Consensus 7 ~~i~v~G~---~~~GKSsli~~l~ 27 (170)
T 1z0j_A 7 LKVCLLGD---TGVGKSSIMWRFV 27 (170)
T ss_dssp EEEEEECC---TTSSHHHHHHHHH
T ss_pred eEEEEECc---CCCCHHHHHHHHH
Confidence 56899996 6999999998874
No 329
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=63.93 E-value=4 Score=34.78 Aligned_cols=22 Identities=27% Similarity=0.540 Sum_probs=18.3
Q ss_pred CcEEEEcCcccCCCCchHHHHHHHH
Q 017904 61 VPVISVGNLTWGGNGKTPMVEFLAH 85 (364)
Q Consensus 61 vPVIsVGNltvGGtGKTP~v~~L~~ 85 (364)
..|++||+ .|+|||+++..++.
T Consensus 7 ~kv~lvG~---~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 7 YRVVLIGE---QGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEEECS---TTSSHHHHHHHHHH
T ss_pred EEEEEECC---CCCCHHHHHHHHhc
Confidence 46999997 69999999987653
No 330
>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}
Probab=63.80 E-value=18 Score=34.08 Aligned_cols=72 Identities=14% Similarity=0.220 Sum_probs=43.4
Q ss_pred EEEEcCCCCCcc-ccCceeEEEEeCCCCCCCCccccCCCC--CCchhhhccc---cEEEEcC--CcchhhhhhHHHHHHH
Q 017904 141 AVILDDGMQHWS-LRRDLEIVMVNGLMPWGNRKLLPLGPL--REPLMALKRA---DIAVVHH--ADLISEQNLKDIELEM 212 (364)
Q Consensus 141 viIlDDgfQh~~-L~rdl~Ivl~Da~~~~gn~~~lPaG~L--REp~~~L~rA---d~ivvtk--~d~~~~~~~~~i~~~l 212 (364)
-|+.+||++.-+ -.+.+|++++|..+|.|- +..| +|....++++ |=|+++. +.....+....+.+.+
T Consensus 141 ~v~~~Dg~~~l~~~~~~yDvIi~D~~dp~~~-----~~~L~t~eFy~~~~~~L~p~Gv~v~q~~sp~~~~~~~~~~~~~l 215 (294)
T 3o4f_A 141 KLVIDDGVNFVNQTSQTFDVIISDCTDPIGP-----GESLFTSAFYEGCKRCLNPGGIFVAQNGVCFLQQEEAIDSHRKL 215 (294)
T ss_dssp EEEESCTTTTTSCSSCCEEEEEESCCCCCCT-----TCCSSCCHHHHHHHHTEEEEEEEEEEEEESSSCCHHHHHHHHHH
T ss_pred EEEechHHHHHhhccccCCEEEEeCCCcCCC-----chhhcCHHHHHHHHHHhCCCCEEEEecCCcccChHHHHHHHHHH
Confidence 477889987653 345699999999998763 3333 4445544444 4455542 3333445555666666
Q ss_pred Hhhcc
Q 017904 213 RDIKK 217 (364)
Q Consensus 213 ~~~~~ 217 (364)
++..+
T Consensus 216 ~~~F~ 220 (294)
T 3o4f_A 216 SHYFS 220 (294)
T ss_dssp HHHCS
T ss_pred HhhCC
Confidence 66554
No 331
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=63.66 E-value=3.6 Score=39.45 Aligned_cols=22 Identities=32% Similarity=0.433 Sum_probs=17.8
Q ss_pred EEEEcCcccCCCCchHHHHHHHHHH
Q 017904 63 VISVGNLTWGGNGKTPMVEFLAHCL 87 (364)
Q Consensus 63 VIsVGNltvGGtGKTP~v~~L~~~L 87 (364)
|+++| - -|||||++...|++.+
T Consensus 8 i~i~G-p--tGsGKTtla~~La~~l 29 (323)
T 3crm_A 8 IFLMG-P--TAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEC-C--TTSCHHHHHHHHHHHS
T ss_pred EEEEC-C--CCCCHHHHHHHHHHHc
Confidence 45555 3 5999999999999987
No 332
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=63.65 E-value=5.3 Score=39.75 Aligned_cols=51 Identities=20% Similarity=0.202 Sum_probs=32.0
Q ss_pred cEEEEcCcccCCCCchHHHHHHHHHHHhC--CCceEEEecCCCCCchHHHHHHHhCC
Q 017904 62 PVISVGNLTWGGNGKTPMVEFLAHCLADS--EISPLILTRGYAGGDEVRMLERHLLE 116 (364)
Q Consensus 62 PVIsVGNltvGGtGKTP~v~~L~~~L~~~--g~kvaIlsRGYg~GDE~~lla~~~~~ 116 (364)
..-++|. -|||||.++..+++...++ +..+.++.=|- ++.|...+.+.+.|
T Consensus 177 R~lIfg~---~g~GKT~Ll~~Ia~~i~~~~~dv~~V~~lIGE-R~~EV~d~~~~~~G 229 (427)
T 3l0o_A 177 RGMIVAP---PKAGKTTILKEIANGIAENHPDTIRIILLIDE-RPEEVTDIRESTNA 229 (427)
T ss_dssp EEEEEEC---TTCCHHHHHHHHHHHHHHHCTTSEEEEEECSC-CHHHHSSSSSSCCS
T ss_pred eEEEecC---CCCChhHHHHHHHHHHhhcCCCeEEEEEEecc-CcchHHHHHHHhCC
Confidence 4456665 4999999999999988753 44445555554 24554434344444
No 333
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=63.64 E-value=6 Score=36.93 Aligned_cols=27 Identities=19% Similarity=0.267 Sum_probs=22.8
Q ss_pred CCCCcEEEEcCcccCCCCchHHHHHHHHHH
Q 017904 58 RLPVPVISVGNLTWGGNGKTPMVEFLAHCL 87 (364)
Q Consensus 58 ~~~vPVIsVGNltvGGtGKTP~v~~L~~~L 87 (364)
+.+..|+..|. -|||||.++.++++.+
T Consensus 49 ~~~~~vLl~Gp---pGtGKT~la~aia~~~ 75 (322)
T 3eie_A 49 KPTSGILLYGP---PGTGKSYLAKAVATEA 75 (322)
T ss_dssp CCCCEEEEECS---SSSCHHHHHHHHHHHH
T ss_pred CCCCeEEEECC---CCCcHHHHHHHHHHHH
Confidence 33457999996 5999999999999987
No 334
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=63.63 E-value=5 Score=37.41 Aligned_cols=30 Identities=23% Similarity=0.356 Sum_probs=23.8
Q ss_pred ccCCCCCcEEEEcCcccCCCCchHHHHHHHHHHH
Q 017904 55 SKHRLPVPVISVGNLTWGGNGKTPMVEFLAHCLA 88 (364)
Q Consensus 55 ~~~~~~vPVIsVGNltvGGtGKTP~v~~L~~~L~ 88 (364)
+..+.+. ++.+|. -|||||+++..+++.+.
T Consensus 32 ~~~~~~~-~ll~Gp---~G~GKTtl~~~la~~l~ 61 (354)
T 1sxj_E 32 QPRDLPH-LLLYGP---NGTGKKTRCMALLESIF 61 (354)
T ss_dssp CTTCCCC-EEEECS---TTSSHHHHHHTHHHHHS
T ss_pred hCCCCCe-EEEECC---CCCCHHHHHHHHHHHHc
Confidence 4455565 888895 59999999999999663
No 335
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=63.62 E-value=3.8 Score=37.82 Aligned_cols=20 Identities=25% Similarity=0.353 Sum_probs=15.8
Q ss_pred EEEEcCcccCCCCchHHHHHHHH
Q 017904 63 VISVGNLTWGGNGKTPMVEFLAH 85 (364)
Q Consensus 63 VIsVGNltvGGtGKTP~v~~L~~ 85 (364)
|.+.|.. ||||||+...|++
T Consensus 78 I~I~G~~---GSGKSTva~~La~ 97 (281)
T 2f6r_A 78 LGLTGIS---GSGKSSVAQRLKN 97 (281)
T ss_dssp EEEEECT---TSCHHHHHHHHHH
T ss_pred EEEECCC---CCCHHHHHHHHHH
Confidence 4566654 9999999999984
No 336
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=63.54 E-value=2.6 Score=36.16 Aligned_cols=21 Identities=29% Similarity=0.472 Sum_probs=17.5
Q ss_pred CCcEEEEcCcccCCCCchHHHHHH
Q 017904 60 PVPVISVGNLTWGGNGKTPMVEFL 83 (364)
Q Consensus 60 ~vPVIsVGNltvGGtGKTP~v~~L 83 (364)
...|++||+ .|+|||+++..+
T Consensus 23 ~~ki~vvG~---~~vGKSsLi~~l 43 (195)
T 3cbq_A 23 IFKVMLVGE---SGVGKSTLAGTF 43 (195)
T ss_dssp EEEEEEECS---TTSSHHHHHHHT
T ss_pred EEEEEEECC---CCCCHHHHHHHH
Confidence 357899997 699999998765
No 337
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=63.49 E-value=10 Score=33.83 Aligned_cols=34 Identities=21% Similarity=0.118 Sum_probs=24.6
Q ss_pred CcEEEEcCcccCCCCchHHHHHHHHHHHhCCCceEEEecCC
Q 017904 61 VPVISVGNLTWGGNGKTPMVEFLAHCLADSEISPLILTRGY 101 (364)
Q Consensus 61 vPVIsVGNltvGGtGKTP~v~~L~~~L~~~g~kvaIlsRGY 101 (364)
.-|+.-|. -|+||||.+..|+++|.. + +++.|.=
T Consensus 6 ~~i~~eG~---~g~GKst~~~~l~~~l~~---~-~~~~~ep 39 (216)
T 3tmk_A 6 KLILIEGL---DRTGKTTQCNILYKKLQP---N-CKLLKFP 39 (216)
T ss_dssp CEEEEEEC---SSSSHHHHHHHHHHHHCS---S-EEEEESS
T ss_pred eEEEEECC---CCCCHHHHHHHHHHHhcc---c-ceEEEec
Confidence 34555564 599999999999999965 3 4556644
No 338
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=63.38 E-value=4.1 Score=35.28 Aligned_cols=23 Identities=26% Similarity=0.530 Sum_probs=19.3
Q ss_pred CCcEEEEcCcccCCCCchHHHHHHHH
Q 017904 60 PVPVISVGNLTWGGNGKTPMVEFLAH 85 (364)
Q Consensus 60 ~vPVIsVGNltvGGtGKTP~v~~L~~ 85 (364)
.+.|++||+ .|+|||+++..++.
T Consensus 28 ~~ki~vvG~---~~vGKSsLi~~l~~ 50 (205)
T 1gwn_A 28 KCKIVVVGD---SQCGKTALLHVFAK 50 (205)
T ss_dssp EEEEEEEES---TTSSHHHHHHHHHH
T ss_pred eeEEEEECC---CCCCHHHHHHHHhc
Confidence 467999997 69999999987764
No 339
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=63.38 E-value=4.2 Score=34.50 Aligned_cols=21 Identities=14% Similarity=0.325 Sum_probs=17.3
Q ss_pred CCcEEEEcCcccCCCCchHHHHHH
Q 017904 60 PVPVISVGNLTWGGNGKTPMVEFL 83 (364)
Q Consensus 60 ~vPVIsVGNltvGGtGKTP~v~~L 83 (364)
...|+.||+ .|+|||+++.++
T Consensus 20 ~~ki~~vG~---~~vGKTsLi~~l 40 (196)
T 3llu_A 20 KPRILLMGL---RRSGKSSIQKVV 40 (196)
T ss_dssp CCEEEEEES---TTSSHHHHHHHH
T ss_pred ceEEEEECC---CCCCHHHHHHHH
Confidence 357999997 699999997654
No 340
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=63.28 E-value=3 Score=36.79 Aligned_cols=23 Identities=22% Similarity=0.176 Sum_probs=12.6
Q ss_pred cEEEEcCcccCCCCchHHHHHHH-HHH
Q 017904 62 PVISVGNLTWGGNGKTPMVEFLA-HCL 87 (364)
Q Consensus 62 PVIsVGNltvGGtGKTP~v~~L~-~~L 87 (364)
.+..+|.- |+||||++..|+ ..+
T Consensus 29 ii~l~Gp~---GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 29 ILVLSSPS---GCGKTTVANKLLEKQK 52 (231)
T ss_dssp EEEEECSC---C----CHHHHHHC---
T ss_pred EEEEECCC---CCCHHHHHHHHHhcCC
Confidence 45677764 999999999998 765
No 341
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=63.21 E-value=4.7 Score=34.72 Aligned_cols=23 Identities=35% Similarity=0.547 Sum_probs=19.1
Q ss_pred EEEEcCcccCCCCchHHHHHHHHHHH
Q 017904 63 VISVGNLTWGGNGKTPMVEFLAHCLA 88 (364)
Q Consensus 63 VIsVGNltvGGtGKTP~v~~L~~~L~ 88 (364)
+..+|. =|+||||++..++..+.
T Consensus 3 i~l~G~---nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 3 IIITGE---PGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEECC---TTSSHHHHHHHHHHHHG
T ss_pred EEEECC---CCCCHHHHHHHHHHHhC
Confidence 456775 49999999999999983
No 342
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=63.13 E-value=4 Score=33.26 Aligned_cols=21 Identities=33% Similarity=0.604 Sum_probs=17.7
Q ss_pred CcEEEEcCcccCCCCchHHHHHHH
Q 017904 61 VPVISVGNLTWGGNGKTPMVEFLA 84 (364)
Q Consensus 61 vPVIsVGNltvGGtGKTP~v~~L~ 84 (364)
..|++||. .|+|||+++..+.
T Consensus 5 ~ki~i~G~---~~vGKSsl~~~l~ 25 (175)
T 2nzj_A 5 YRVVLLGD---PGVGKTSLASLFA 25 (175)
T ss_dssp EEEEEECC---TTSSHHHHHHHHH
T ss_pred EEEEEECC---CCccHHHHHHHHh
Confidence 46899997 5999999998765
No 343
>2am1_A SP protein, UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D-A alanine ligase, MURF protein; HET: 1LG; 2.50A {Streptococcus pneumoniae} PDB: 2am2_A*
Probab=63.09 E-value=5.6 Score=39.29 Aligned_cols=35 Identities=40% Similarity=0.535 Sum_probs=27.9
Q ss_pred CCcEEEEcCcccCCCCchHHHHHHHHHHHhCCCceEEEecC
Q 017904 60 PVPVISVGNLTWGGNGKTPMVEFLAHCLADSEISPLILTRG 100 (364)
Q Consensus 60 ~vPVIsVGNltvGGtGKTP~v~~L~~~L~~~g~kvaIlsRG 100 (364)
+.|||.|. |-.|||+++.+++..|++.|.. +-+.|
T Consensus 99 ~~~vI~VT----GTnGKTTT~~~l~~iL~~~g~~--~~s~g 133 (454)
T 2am1_A 99 TVDVFAVT----GSNGKTTTKDMLAHLLSTRYKT--YKTQG 133 (454)
T ss_dssp CCEEEEEE----CCCSSSCHHHHHHHHHTTTSCE--EECCT
T ss_pred CCCEEEEe----CCCCcHHHHHHHHHHHHhcCCE--eecCC
Confidence 35899887 7889999999999999998853 33444
No 344
>3czq_A Putative polyphosphate kinase 2; structural genomics, APC6299, PSI-2, structure initiative; HET: MSE GOL; 2.23A {Sinorhizobium meliloti}
Probab=63.08 E-value=6 Score=37.66 Aligned_cols=51 Identities=10% Similarity=-0.014 Sum_probs=36.5
Q ss_pred HHHHHHHHHHhHhcCCCccCCCCCcEEEEcCcccCCCCchHHHHHHHHHHHhCCCceEEE
Q 017904 38 YGISLFLRHSFYRFGFFSKHRLPVPVISVGNLTWGGNGKTPMVEFLAHCLADSEISPLIL 97 (364)
Q Consensus 38 Y~~~~~~R~~~y~~gi~~~~~~~vPVIsVGNltvGGtGKTP~v~~L~~~L~~~g~kvaIl 97 (364)
=.-+..+-+++|..| .++ +|++-++ -|+|||+.+..|.++|..+|++|..+
T Consensus 70 q~~L~~lQ~~~~~~~------~~v-lIvfEG~--DgAGKgt~Ik~L~e~Ldprg~~V~~~ 120 (304)
T 3czq_A 70 QIELVKVQFWMQATG------KRV-MAVFEGR--DAAGKGGAIHATTANMNPRSARVVAL 120 (304)
T ss_dssp HHHHHHHHHHHHHHC------CCE-EEEEEES--TTSSHHHHHHHHHTTSCTTTEEEEEC
T ss_pred HHHHHHHHHHHHHcC------CCe-EEEEeCC--CCCCHHHHHHHHHHHhcccCCeEEEe
Confidence 334455566666653 233 4556655 89999999999999999999886554
No 345
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=63.06 E-value=4.6 Score=37.93 Aligned_cols=27 Identities=30% Similarity=0.405 Sum_probs=23.5
Q ss_pred CCcEEEEcCcccCCCCchHHHHHHHHHHHh
Q 017904 60 PVPVISVGNLTWGGNGKTPMVEFLAHCLAD 89 (364)
Q Consensus 60 ~vPVIsVGNltvGGtGKTP~v~~L~~~L~~ 89 (364)
+-+++..|. -|||||.++.++++.+..
T Consensus 70 ~~~vLl~Gp---pGtGKT~la~~la~~l~~ 96 (368)
T 3uk6_A 70 GRAVLIAGQ---PGTGKTAIAMGMAQALGP 96 (368)
T ss_dssp TCEEEEEES---TTSSHHHHHHHHHHHHCS
T ss_pred CCEEEEECC---CCCCHHHHHHHHHHHhcc
Confidence 458999996 599999999999999953
No 346
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=62.99 E-value=6.2 Score=40.17 Aligned_cols=28 Identities=14% Similarity=0.082 Sum_probs=23.6
Q ss_pred cEEEEcCcccCCCCchHHHHHHHHHHHh-CC
Q 017904 62 PVISVGNLTWGGNGKTPMVEFLAHCLAD-SE 91 (364)
Q Consensus 62 PVIsVGNltvGGtGKTP~v~~L~~~L~~-~g 91 (364)
.+|.+-+++ ||||||+...|++.|.. +|
T Consensus 396 ~~I~l~Gls--GsGKSTIa~~La~~L~~~~g 424 (511)
T 1g8f_A 396 FSIVLGNSL--TVSREQLSIALLSTFLQFGG 424 (511)
T ss_dssp EEEEECTTC--CSCHHHHHHHHHHHHTTSCS
T ss_pred eEEEecccC--CCCHHHHHHHHHHHHHHhhc
Confidence 577777774 99999999999999976 54
No 347
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=62.97 E-value=4.3 Score=34.26 Aligned_cols=21 Identities=38% Similarity=0.566 Sum_probs=17.4
Q ss_pred CcEEEEcCcccCCCCchHHHHHHH
Q 017904 61 VPVISVGNLTWGGNGKTPMVEFLA 84 (364)
Q Consensus 61 vPVIsVGNltvGGtGKTP~v~~L~ 84 (364)
.-|++||. .|+|||+++..+.
T Consensus 15 ~ki~v~G~---~~~GKSsli~~l~ 35 (206)
T 2bov_A 15 HKVIMVGS---GGVGKSALTLQFM 35 (206)
T ss_dssp EEEEEECS---TTSSHHHHHHHHH
T ss_pred EEEEEECC---CCCCHHHHHHHHH
Confidence 46889996 5999999988776
No 348
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=62.94 E-value=4.1 Score=34.46 Aligned_cols=22 Identities=36% Similarity=0.517 Sum_probs=18.5
Q ss_pred CCcEEEEcCcccCCCCchHHHHHHH
Q 017904 60 PVPVISVGNLTWGGNGKTPMVEFLA 84 (364)
Q Consensus 60 ~vPVIsVGNltvGGtGKTP~v~~L~ 84 (364)
.+-|++||. .|+|||+++..+.
T Consensus 20 ~~ki~~~G~---~~~GKssl~~~l~ 41 (201)
T 2q3h_A 20 GVKCVLVGD---GAVGKTSLVVSYT 41 (201)
T ss_dssp CEEEEEECS---TTSSHHHHHHHHH
T ss_pred ceEEEEECC---CCCCHHHHHHHHH
Confidence 457899997 6999999998775
No 349
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=62.89 E-value=3.6 Score=34.88 Aligned_cols=23 Identities=30% Similarity=0.531 Sum_probs=18.7
Q ss_pred CCcEEEEcCcccCCCCchHHHHHHHH
Q 017904 60 PVPVISVGNLTWGGNGKTPMVEFLAH 85 (364)
Q Consensus 60 ~vPVIsVGNltvGGtGKTP~v~~L~~ 85 (364)
..-|+++|. .|+|||+++..+..
T Consensus 8 ~~ki~v~G~---~~~GKSsli~~l~~ 30 (207)
T 1vg8_A 8 LLKVIILGD---SGVGKTSLMNQYVN 30 (207)
T ss_dssp EEEEEEECC---TTSSHHHHHHHHHH
T ss_pred ceEEEEECc---CCCCHHHHHHHHHc
Confidence 457899996 59999999987753
No 350
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=62.68 E-value=5 Score=37.32 Aligned_cols=34 Identities=15% Similarity=0.170 Sum_probs=25.6
Q ss_pred CCCcEEEEcCcccCCCCchHHHHHHHHHHHhCCCceEEEe
Q 017904 59 LPVPVISVGNLTWGGNGKTPMVEFLAHCLADSEISPLILT 98 (364)
Q Consensus 59 ~~vPVIsVGNltvGGtGKTP~v~~L~~~L~~~g~kvaIls 98 (364)
.+.+|+..|. -|||||.++.++++.+ |.....++
T Consensus 54 ~~~~vll~G~---~GtGKT~la~~ia~~~---~~~~~~~~ 87 (338)
T 3pfi_A 54 CLDHILFSGP---AGLGKTTLANIISYEM---SANIKTTA 87 (338)
T ss_dssp CCCCEEEECS---TTSSHHHHHHHHHHHT---TCCEEEEE
T ss_pred CCCeEEEECc---CCCCHHHHHHHHHHHh---CCCeEEec
Confidence 3558999996 6999999999998876 34444443
No 351
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=62.39 E-value=2.7 Score=40.62 Aligned_cols=24 Identities=21% Similarity=0.249 Sum_probs=18.4
Q ss_pred cEEEEcCcccCCCCchHHHHHHHHHH
Q 017904 62 PVISVGNLTWGGNGKTPMVEFLAHCL 87 (364)
Q Consensus 62 PVIsVGNltvGGtGKTP~v~~L~~~L 87 (364)
++|+|-+- -|||||++...||+.+
T Consensus 41 ~lIvI~GP--TgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 41 KLLVLMGA--TGTGKSRLSIDLAAHF 64 (339)
T ss_dssp EEEEEECS--TTSSHHHHHHHHHTTS
T ss_pred ceEEEECC--CCCCHHHHHHHHHHHC
Confidence 35544444 5999999999999877
No 352
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=62.32 E-value=3.7 Score=33.99 Aligned_cols=23 Identities=22% Similarity=0.456 Sum_probs=18.8
Q ss_pred CCcEEEEcCcccCCCCchHHHHHHHH
Q 017904 60 PVPVISVGNLTWGGNGKTPMVEFLAH 85 (364)
Q Consensus 60 ~vPVIsVGNltvGGtGKTP~v~~L~~ 85 (364)
.+-|++||. .|+|||+++..+..
T Consensus 11 ~~ki~v~G~---~~~GKSsli~~l~~ 33 (195)
T 3bc1_A 11 LIKFLALGD---SGVGKTSVLYQYTD 33 (195)
T ss_dssp EEEEEEECS---TTSSHHHHHHHHHH
T ss_pred eEEEEEECC---CCCCHHHHHHHHhc
Confidence 467899997 69999999887764
No 353
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=62.26 E-value=4.5 Score=33.43 Aligned_cols=21 Identities=29% Similarity=0.457 Sum_probs=17.8
Q ss_pred CcEEEEcCcccCCCCchHHHHHHH
Q 017904 61 VPVISVGNLTWGGNGKTPMVEFLA 84 (364)
Q Consensus 61 vPVIsVGNltvGGtGKTP~v~~L~ 84 (364)
.-|+++|. .|+|||+++..+.
T Consensus 5 ~ki~v~G~---~~~GKSsli~~l~ 25 (189)
T 4dsu_A 5 YKLVVVGA---DGVGKSALTIQLI 25 (189)
T ss_dssp EEEEEECC---TTSSHHHHHHHHH
T ss_pred EEEEEECC---CCCCHHHHHHHHH
Confidence 46899997 5999999998875
No 354
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=62.24 E-value=6.1 Score=37.57 Aligned_cols=36 Identities=14% Similarity=0.056 Sum_probs=26.1
Q ss_pred EEEEcCcccCCCCchHHHHHHHHHHHh------CCCceEEEecCC
Q 017904 63 VISVGNLTWGGNGKTPMVEFLAHCLAD------SEISPLILTRGY 101 (364)
Q Consensus 63 VIsVGNltvGGtGKTP~v~~L~~~L~~------~g~kvaIlsRGY 101 (364)
+++.|. -|+|||+++..++..... .|.+++.++-.-
T Consensus 125 ~~I~G~---~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~ 166 (343)
T 1v5w_A 125 TEAFGE---FRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN 166 (343)
T ss_dssp EEEECC---TTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred EEEECC---CCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 445554 499999999999987433 467888887553
No 355
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=62.09 E-value=3.5 Score=38.31 Aligned_cols=25 Identities=36% Similarity=0.464 Sum_probs=22.0
Q ss_pred CcEEEEcCcccCCCCchHHHHHHHHHHH
Q 017904 61 VPVISVGNLTWGGNGKTPMVEFLAHCLA 88 (364)
Q Consensus 61 vPVIsVGNltvGGtGKTP~v~~L~~~L~ 88 (364)
.+|+..|.= |||||.++.++++.+.
T Consensus 46 ~~vLl~G~~---GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 46 GGVLVFGDR---GTGKSTAVRALAALLP 70 (350)
T ss_dssp CCEEEECCG---GGCTTHHHHHHHHHSC
T ss_pred ceEEEECCC---CccHHHHHHHHHHhCc
Confidence 379999974 9999999999999884
No 356
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=61.98 E-value=4.5 Score=34.58 Aligned_cols=21 Identities=33% Similarity=0.581 Sum_probs=17.9
Q ss_pred CcEEEEcCcccCCCCchHHHHHHH
Q 017904 61 VPVISVGNLTWGGNGKTPMVEFLA 84 (364)
Q Consensus 61 vPVIsVGNltvGGtGKTP~v~~L~ 84 (364)
+.|+++|+ .|+|||+++..+.
T Consensus 10 ~ki~i~G~---~~~GKTsli~~l~ 30 (212)
T 2j0v_A 10 IKCVTVGD---GAVGKTCMLICYT 30 (212)
T ss_dssp EEEEEEES---TTSSHHHHHHHHH
T ss_pred EEEEEECC---CCCCHHHHHHHHh
Confidence 57899997 6999999987765
No 357
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=61.89 E-value=6 Score=32.37 Aligned_cols=22 Identities=27% Similarity=0.486 Sum_probs=17.9
Q ss_pred CCcEEEEcCcccCCCCchHHHHHHH
Q 017904 60 PVPVISVGNLTWGGNGKTPMVEFLA 84 (364)
Q Consensus 60 ~vPVIsVGNltvGGtGKTP~v~~L~ 84 (364)
+.-|+++|. .|+|||+++..+.
T Consensus 8 ~~~i~v~G~---~~~GKssl~~~l~ 29 (178)
T 2lkc_A 8 PPVVTIMGH---VDHGKTTLLDAIR 29 (178)
T ss_dssp CCEEEEESC---TTTTHHHHHHHHH
T ss_pred CCEEEEECC---CCCCHHHHHHHHh
Confidence 346888997 5999999998775
No 358
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=61.87 E-value=5.3 Score=32.36 Aligned_cols=22 Identities=27% Similarity=0.466 Sum_probs=18.2
Q ss_pred CCcEEEEcCcccCCCCchHHHHHHH
Q 017904 60 PVPVISVGNLTWGGNGKTPMVEFLA 84 (364)
Q Consensus 60 ~vPVIsVGNltvGGtGKTP~v~~L~ 84 (364)
..-|+++|. .|+|||+++..+.
T Consensus 7 ~~~i~v~G~---~~~GKssl~~~l~ 28 (171)
T 1upt_A 7 EMRILILGL---DGAGKTTILYRLQ 28 (171)
T ss_dssp CEEEEEECS---TTSSHHHHHHHHH
T ss_pred ccEEEEECC---CCCCHHHHHHHHh
Confidence 356899996 5999999998874
No 359
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=61.84 E-value=3.3 Score=36.76 Aligned_cols=29 Identities=28% Similarity=0.481 Sum_probs=20.5
Q ss_pred cEEEEcCcccCCCCchHHHHHHHHHHHhCCCceEEE
Q 017904 62 PVISVGNLTWGGNGKTPMVEFLAHCLADSEISPLIL 97 (364)
Q Consensus 62 PVIsVGNltvGGtGKTP~v~~L~~~L~~~g~kvaIl 97 (364)
-|..+|+- |+||||++..|+.+ |.++.+.
T Consensus 22 ~i~i~G~~---GsGKSTl~~~L~~~----~g~v~~~ 50 (230)
T 2vp4_A 22 TVLIEGNI---GSGKTTYLNHFEKY----KNDICLL 50 (230)
T ss_dssp EEEEECST---TSCHHHHHHTTGGG----TTTEEEE
T ss_pred EEEEECCC---CCCHHHHHHHHHhc----cCCeEEE
Confidence 35566765 99999999888776 3455444
No 360
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=61.69 E-value=4.7 Score=33.85 Aligned_cols=23 Identities=26% Similarity=0.489 Sum_probs=18.6
Q ss_pred CCcEEEEcCcccCCCCchHHHHHHHH
Q 017904 60 PVPVISVGNLTWGGNGKTPMVEFLAH 85 (364)
Q Consensus 60 ~vPVIsVGNltvGGtGKTP~v~~L~~ 85 (364)
.+-|++||. .|+|||+++..+..
T Consensus 25 ~~ki~v~G~---~~~GKSsLi~~l~~ 47 (193)
T 2oil_A 25 VFKVVLIGE---SGVGKTNLLSRFTR 47 (193)
T ss_dssp EEEEEEESS---TTSSHHHHHHHHHH
T ss_pred ceEEEEECc---CCCCHHHHHHHHhc
Confidence 357899997 59999999887754
No 361
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=61.66 E-value=3.9 Score=34.51 Aligned_cols=22 Identities=32% Similarity=0.516 Sum_probs=17.1
Q ss_pred cEEEEcCcccCCCCchHHHHHHHHH
Q 017904 62 PVISVGNLTWGGNGKTPMVEFLAHC 86 (364)
Q Consensus 62 PVIsVGNltvGGtGKTP~v~~L~~~ 86 (364)
-++.+|. -||||||+...|+..
T Consensus 11 ~i~l~G~---~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 11 ILLLSGH---PGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEEC---TTSCHHHHHHHHHTC
T ss_pred EEEEECC---CCCCHHHHHHHHHhc
Confidence 3556663 599999999988775
No 362
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=61.62 E-value=6.7 Score=34.18 Aligned_cols=35 Identities=20% Similarity=0.105 Sum_probs=23.6
Q ss_pred cEEEEcCcccCCCCchHHHHHHHHHHHh------CCCceEEEec
Q 017904 62 PVISVGNLTWGGNGKTPMVEFLAHCLAD------SEISPLILTR 99 (364)
Q Consensus 62 PVIsVGNltvGGtGKTP~v~~L~~~L~~------~g~kvaIlsR 99 (364)
-+..+|. -|+|||+++..++..... .+.++..++-
T Consensus 26 ~~~i~G~---~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~ 66 (243)
T 1n0w_A 26 ITEMFGE---FRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDT 66 (243)
T ss_dssp EEEEECC---TTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEES
T ss_pred EEEEECC---CCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEEC
Confidence 3556664 699999999999985322 2455665543
No 363
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=61.39 E-value=4.8 Score=33.02 Aligned_cols=23 Identities=30% Similarity=0.455 Sum_probs=18.4
Q ss_pred CCcEEEEcCcccCCCCchHHHHHHHH
Q 017904 60 PVPVISVGNLTWGGNGKTPMVEFLAH 85 (364)
Q Consensus 60 ~vPVIsVGNltvGGtGKTP~v~~L~~ 85 (364)
..-|++||. .|+|||+++..+..
T Consensus 10 ~~~i~v~G~---~~~GKssli~~l~~ 32 (180)
T 2g6b_A 10 AFKVMLVGD---SGVGKTCLLVRFKD 32 (180)
T ss_dssp EEEEEEECS---TTSSHHHHHHHHHH
T ss_pred ceEEEEECc---CCCCHHHHHHHHHh
Confidence 356889996 59999999987753
No 364
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=61.33 E-value=4.7 Score=33.36 Aligned_cols=22 Identities=23% Similarity=0.486 Sum_probs=18.4
Q ss_pred CCcEEEEcCcccCCCCchHHHHHHH
Q 017904 60 PVPVISVGNLTWGGNGKTPMVEFLA 84 (364)
Q Consensus 60 ~vPVIsVGNltvGGtGKTP~v~~L~ 84 (364)
...|+++|. .|+|||+++..+.
T Consensus 10 ~~ki~v~G~---~~~GKSsli~~l~ 31 (186)
T 2bme_A 10 LFKFLVIGN---AGTGKSCLLHQFI 31 (186)
T ss_dssp EEEEEEEES---TTSSHHHHHHHHH
T ss_pred ceEEEEECC---CCCCHHHHHHHHH
Confidence 357899997 5999999998775
No 365
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=61.25 E-value=4.4 Score=34.17 Aligned_cols=35 Identities=20% Similarity=0.298 Sum_probs=18.7
Q ss_pred hHhcCCCccCCCC--CcEEEEcCcccCCCCchHHHHHHHH
Q 017904 48 FYRFGFFSKHRLP--VPVISVGNLTWGGNGKTPMVEFLAH 85 (364)
Q Consensus 48 ~y~~gi~~~~~~~--vPVIsVGNltvGGtGKTP~v~~L~~ 85 (364)
....|+....... +-|++||. .|+|||+++..++.
T Consensus 9 ~~~~~~~~~~~~~~~~ki~vvG~---~~~GKSsli~~l~~ 45 (192)
T 2fg5_A 9 HHSSGLVPRGSAIRELKVCLLGD---TGVGKSSIVCRFVQ 45 (192)
T ss_dssp ------------CEEEEEEEEEC---TTSSHHHHHHHHHH
T ss_pred ccccccccccccCCceEEEEECc---CCCCHHHHHHHHhc
Confidence 3445555544433 57899996 59999999888763
No 366
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=61.19 E-value=4.9 Score=33.11 Aligned_cols=21 Identities=29% Similarity=0.487 Sum_probs=17.5
Q ss_pred CcEEEEcCcccCCCCchHHHHHHH
Q 017904 61 VPVISVGNLTWGGNGKTPMVEFLA 84 (364)
Q Consensus 61 vPVIsVGNltvGGtGKTP~v~~L~ 84 (364)
+-|++||+ .|+|||+++..+.
T Consensus 6 ~~i~~~G~---~~~GKssl~~~l~ 26 (186)
T 1mh1_A 6 IKCVVVGD---GAVGKTCLLISYT 26 (186)
T ss_dssp EEEEEECS---TTSSHHHHHHHHH
T ss_pred EEEEEECC---CCCCHHHHHHHHH
Confidence 46889997 6999999997764
No 367
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=61.02 E-value=5.2 Score=36.61 Aligned_cols=23 Identities=35% Similarity=0.491 Sum_probs=19.6
Q ss_pred cEEEEcCcccCCCCchHHHHHHHHHH
Q 017904 62 PVISVGNLTWGGNGKTPMVEFLAHCL 87 (364)
Q Consensus 62 PVIsVGNltvGGtGKTP~v~~L~~~L 87 (364)
.|+.+|- -|+||||+...|++.|
T Consensus 50 ~i~l~G~---~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 50 SMYLVGM---MGSGKTTVGKIMARSL 72 (250)
T ss_dssp CEEEECS---TTSCHHHHHHHHHHHH
T ss_pred EEEEECC---CCCCHHHHHHHHHHhc
Confidence 5777775 4999999999999987
No 368
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=60.87 E-value=4.5 Score=35.00 Aligned_cols=22 Identities=45% Similarity=0.773 Sum_probs=18.5
Q ss_pred CCcEEEEcCcccCCCCchHHHHHHH
Q 017904 60 PVPVISVGNLTWGGNGKTPMVEFLA 84 (364)
Q Consensus 60 ~vPVIsVGNltvGGtGKTP~v~~L~ 84 (364)
.+-|++||. .|+|||+++..+.
T Consensus 34 ~~ki~vvG~---~~vGKSsli~~l~ 55 (214)
T 2j1l_A 34 SVKVVLVGD---GGCGKTSLLMVFA 55 (214)
T ss_dssp EEEEEEEEC---TTSSHHHHHHHHH
T ss_pred eEEEEEECc---CCCCHHHHHHHHH
Confidence 357899997 6999999998776
No 369
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=60.68 E-value=5 Score=33.16 Aligned_cols=21 Identities=29% Similarity=0.544 Sum_probs=18.0
Q ss_pred CcEEEEcCcccCCCCchHHHHHHH
Q 017904 61 VPVISVGNLTWGGNGKTPMVEFLA 84 (364)
Q Consensus 61 vPVIsVGNltvGGtGKTP~v~~L~ 84 (364)
.-|++||. .|+|||+++..+.
T Consensus 19 ~ki~v~G~---~~~GKSsl~~~l~ 39 (183)
T 3kkq_A 19 YKLVVVGD---GGVGKSALTIQFF 39 (183)
T ss_dssp EEEEEECS---TTSSHHHHHHHHH
T ss_pred eEEEEECC---CCCCHHHHHHHHH
Confidence 56889996 6999999988876
No 370
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=60.65 E-value=7.1 Score=36.16 Aligned_cols=23 Identities=30% Similarity=0.375 Sum_probs=20.6
Q ss_pred EEEEcCcccCCCCchHHHHHHHHHHH
Q 017904 63 VISVGNLTWGGNGKTPMVEFLAHCLA 88 (364)
Q Consensus 63 VIsVGNltvGGtGKTP~v~~L~~~L~ 88 (364)
++..|. -|||||+++..+++.+.
T Consensus 61 ~ll~G~---~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 61 MLFYGP---PGTGKTSTILALTKELY 83 (353)
T ss_dssp EEEECS---TTSSHHHHHHHHHHHHH
T ss_pred EEEECC---CCCCHHHHHHHHHHHhC
Confidence 888885 59999999999999985
No 371
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=60.57 E-value=4.4 Score=40.83 Aligned_cols=25 Identities=12% Similarity=0.158 Sum_probs=19.1
Q ss_pred CcEEEEcCcccCCCCchHHHHHHHHHH
Q 017904 61 VPVISVGNLTWGGNGKTPMVEFLAHCL 87 (364)
Q Consensus 61 vPVIsVGNltvGGtGKTP~v~~L~~~L 87 (364)
.++|+|-+. ||.|||+++..+++..
T Consensus 147 ~~~v~I~G~--~GiGKTtLa~~~~~~~ 171 (591)
T 1z6t_A 147 PGWVTIHGM--AGCGKSVLAAEAVRDH 171 (591)
T ss_dssp CEEEEEECC--TTSSHHHHHHHHHCCH
T ss_pred CceEEEEcC--CCCCHHHHHHHHHhch
Confidence 456666555 9999999999887643
No 372
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=60.54 E-value=5 Score=34.83 Aligned_cols=23 Identities=35% Similarity=0.507 Sum_probs=18.9
Q ss_pred CCcEEEEcCcccCCCCchHHHHHHHH
Q 017904 60 PVPVISVGNLTWGGNGKTPMVEFLAH 85 (364)
Q Consensus 60 ~vPVIsVGNltvGGtGKTP~v~~L~~ 85 (364)
.+.|++||+ .|+|||+++..+..
T Consensus 27 ~~ki~vvG~---~~vGKSsL~~~l~~ 49 (214)
T 3q3j_B 27 RCKLVLVGD---VQCGKTAMLQVLAK 49 (214)
T ss_dssp CEEEEEECS---TTSSHHHHHHHHHH
T ss_pred eEEEEEECc---CCCCHHHHHHHHhc
Confidence 357999997 69999999887754
No 373
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=60.30 E-value=6.8 Score=37.81 Aligned_cols=33 Identities=21% Similarity=0.332 Sum_probs=24.2
Q ss_pred cEEEEcCcccCCCCchHHHHHHHHHHHhC-CCceEEE
Q 017904 62 PVISVGNLTWGGNGKTPMVEFLAHCLADS-EISPLIL 97 (364)
Q Consensus 62 PVIsVGNltvGGtGKTP~v~~L~~~L~~~-g~kvaIl 97 (364)
-|.++|- -|+||||++..++.++... |.++..+
T Consensus 125 ~i~I~Gp---tGSGKTTlL~~l~g~~~~~~~~~i~t~ 158 (356)
T 3jvv_A 125 LVLVTGP---TGSGKSTTLAAMLDYLNNTKYHHILTI 158 (356)
T ss_dssp EEEEECS---TTSCHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred EEEEECC---CCCCHHHHHHHHHhcccCCCCcEEEEc
Confidence 4566664 5999999999999999764 4454443
No 374
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=60.08 E-value=4.1 Score=39.18 Aligned_cols=32 Identities=19% Similarity=0.220 Sum_probs=22.2
Q ss_pred cEEEEcCcccCCCCchHHHHHHHHHHHhCCCceEEEecC
Q 017904 62 PVISVGNLTWGGNGKTPMVEFLAHCLADSEISPLILTRG 100 (364)
Q Consensus 62 PVIsVGNltvGGtGKTP~v~~L~~~L~~~g~kvaIlsRG 100 (364)
|+|+|-+= -|+|||+++..|++.+. ..|||=+
T Consensus 4 ~~i~i~Gp--tgsGKt~la~~La~~~~-----~~iis~D 35 (322)
T 3exa_A 4 KLVAIVGP--TAVGKTKTSVMLAKRLN-----GEVISGD 35 (322)
T ss_dssp EEEEEECC--TTSCHHHHHHHHHHTTT-----EEEEECC
T ss_pred cEEEEECC--CcCCHHHHHHHHHHhCc-----cceeecC
Confidence 45555444 49999999999998762 3566543
No 375
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=60.06 E-value=5.2 Score=33.41 Aligned_cols=22 Identities=23% Similarity=0.419 Sum_probs=18.4
Q ss_pred CCcEEEEcCcccCCCCchHHHHHHH
Q 017904 60 PVPVISVGNLTWGGNGKTPMVEFLA 84 (364)
Q Consensus 60 ~vPVIsVGNltvGGtGKTP~v~~L~ 84 (364)
.+-|+++|. .|+|||+++..+.
T Consensus 16 ~~ki~v~G~---~~~GKSsli~~l~ 37 (196)
T 3tkl_A 16 LFKLLLIGD---SGVGKSCLLLRFA 37 (196)
T ss_dssp EEEEEEECS---TTSSHHHHHHHHH
T ss_pred ceEEEEECc---CCCCHHHHHHHHH
Confidence 356899997 5999999998876
No 376
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=60.06 E-value=3.3 Score=33.89 Aligned_cols=25 Identities=16% Similarity=0.300 Sum_probs=20.2
Q ss_pred CCcEEEEcCcccCCCCchHHHHHHHHHH
Q 017904 60 PVPVISVGNLTWGGNGKTPMVEFLAHCL 87 (364)
Q Consensus 60 ~vPVIsVGNltvGGtGKTP~v~~L~~~L 87 (364)
+.||+..|. -|||||.++.++++..
T Consensus 27 ~~~vll~G~---~GtGKt~lA~~i~~~~ 51 (143)
T 3co5_A 27 TSPVFLTGE---AGSPFETVARYFHKNG 51 (143)
T ss_dssp SSCEEEEEE---TTCCHHHHHGGGCCTT
T ss_pred CCcEEEECC---CCccHHHHHHHHHHhC
Confidence 569999997 5999999888776543
No 377
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=60.02 E-value=5.2 Score=33.86 Aligned_cols=21 Identities=33% Similarity=0.377 Sum_probs=16.5
Q ss_pred EEEEcCcccCCCCchHHHHHHHHH
Q 017904 63 VISVGNLTWGGNGKTPMVEFLAHC 86 (364)
Q Consensus 63 VIsVGNltvGGtGKTP~v~~L~~~ 86 (364)
++.+|. -|+||||+...|++.
T Consensus 5 i~l~G~---~GaGKSTl~~~L~~~ 25 (189)
T 2bdt_A 5 YIITGP---AGVGKSTTCKRLAAQ 25 (189)
T ss_dssp EEEECS---TTSSHHHHHHHHHHH
T ss_pred EEEECC---CCCcHHHHHHHHhcc
Confidence 456664 599999999999863
No 378
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=59.90 E-value=4.8 Score=35.28 Aligned_cols=25 Identities=24% Similarity=0.290 Sum_probs=22.0
Q ss_pred CcEEEEcCcccCCCCchHHHHHHHHHH
Q 017904 61 VPVISVGNLTWGGNGKTPMVEFLAHCL 87 (364)
Q Consensus 61 vPVIsVGNltvGGtGKTP~v~~L~~~L 87 (364)
.+||.|+.. =|||||++...|++.|
T Consensus 6 ~~iI~i~g~--~GsGk~ti~~~la~~l 30 (201)
T 3fdi_A 6 QIIIAIGRE--FGSGGHLVAKKLAEHY 30 (201)
T ss_dssp CCEEEEEEC--TTSSHHHHHHHHHHHT
T ss_pred CeEEEEeCC--CCCCHHHHHHHHHHHh
Confidence 478888877 4999999999999998
No 379
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=59.80 E-value=5.3 Score=35.43 Aligned_cols=38 Identities=16% Similarity=0.143 Sum_probs=25.4
Q ss_pred CcEEEEcCcccCCCCchHHHHHHHHHHHh-CCCceEEEecCC
Q 017904 61 VPVISVGNLTWGGNGKTPMVEFLAHCLAD-SEISPLILTRGY 101 (364)
Q Consensus 61 vPVIsVGNltvGGtGKTP~v~~L~~~L~~-~g~kvaIlsRGY 101 (364)
.+++.+|- -|+|||+++..|++.+.. -...+-..+|.-
T Consensus 20 ~~ivl~GP---SGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p 58 (197)
T 3ney_A 20 KTLVLIGA---SGVGRSHIKNALLSQNPEKFVYPVPYTTRPP 58 (197)
T ss_dssp CEEEEECC---TTSSHHHHHHHHHHHCTTTEECCCCEECSCC
T ss_pred CEEEEECc---CCCCHHHHHHHHHhhCCccEEeeecccccCC
Confidence 46667773 599999999999987642 123444455543
No 380
>2g0t_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.67A {Thermotoga maritima} SCOP: c.37.1.10
Probab=59.72 E-value=11 Score=36.64 Aligned_cols=39 Identities=21% Similarity=0.124 Sum_probs=30.6
Q ss_pred CCCCcEE-EEcCcccCCCCchHHHHHHHHHHHhCCCceEEEe
Q 017904 58 RLPVPVI-SVGNLTWGGNGKTPMVEFLAHCLADSEISPLILT 98 (364)
Q Consensus 58 ~~~vPVI-sVGNltvGGtGKTP~v~~L~~~L~~~g~kvaIls 98 (364)
+.++|.| ++|-= -+.|||.++..|.+.|+++|++++.+.
T Consensus 166 ~i~~~ri~v~GTD--t~vGKt~t~~~L~~~l~~~G~~v~~v~ 205 (350)
T 2g0t_A 166 RKKIKVVGVFGTD--CVVGKRTTAVQLWERALEKGIKAGFLA 205 (350)
T ss_dssp GCCSEEEEEEESS--SSSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eecceEEEEecCC--CCccCccHHHHHHHHHHhcCCeEEEEc
Confidence 3456655 45533 369999999999999999999999964
No 381
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=59.70 E-value=5.2 Score=34.22 Aligned_cols=21 Identities=29% Similarity=0.437 Sum_probs=17.7
Q ss_pred CcEEEEcCcccCCCCchHHHHHHH
Q 017904 61 VPVISVGNLTWGGNGKTPMVEFLA 84 (364)
Q Consensus 61 vPVIsVGNltvGGtGKTP~v~~L~ 84 (364)
+.|++||+ .|+|||+++..+.
T Consensus 30 ~ki~vvG~---~~vGKSsli~~l~ 50 (201)
T 2hup_A 30 FKLVLVGD---ASVGKTCVVQRFK 50 (201)
T ss_dssp EEEEEEEC---TTSSHHHHHHHHH
T ss_pred eEEEEECc---CCCCHHHHHHHHh
Confidence 56899997 6999999988764
No 382
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=59.64 E-value=5.3 Score=33.54 Aligned_cols=22 Identities=32% Similarity=0.403 Sum_probs=18.3
Q ss_pred CcEEEEcCcccCCCCchHHHHHHHH
Q 017904 61 VPVISVGNLTWGGNGKTPMVEFLAH 85 (364)
Q Consensus 61 vPVIsVGNltvGGtGKTP~v~~L~~ 85 (364)
+-|++||+ .|+|||+++..++.
T Consensus 23 ~ki~v~G~---~~~GKSsli~~l~~ 44 (188)
T 1zd9_A 23 MELTLVGL---QYSGKTTFVNVIAS 44 (188)
T ss_dssp EEEEEECS---TTSSHHHHHHHHHH
T ss_pred cEEEEECC---CCCCHHHHHHHHHc
Confidence 46899997 59999999988754
No 383
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=59.59 E-value=5.4 Score=33.41 Aligned_cols=21 Identities=29% Similarity=0.406 Sum_probs=17.9
Q ss_pred CcEEEEcCcccCCCCchHHHHHHH
Q 017904 61 VPVISVGNLTWGGNGKTPMVEFLA 84 (364)
Q Consensus 61 vPVIsVGNltvGGtGKTP~v~~L~ 84 (364)
..|++||. .|+|||+++..++
T Consensus 23 ~ki~vvG~---~~~GKSsli~~l~ 43 (189)
T 2gf9_A 23 FKLLLIGN---SSVGKTSFLFRYA 43 (189)
T ss_dssp EEEEEECS---TTSSHHHHHHHHH
T ss_pred eEEEEECC---CCCCHHHHHHHHH
Confidence 57899997 5999999998775
No 384
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=59.55 E-value=4.9 Score=32.87 Aligned_cols=21 Identities=24% Similarity=0.536 Sum_probs=17.6
Q ss_pred CcEEEEcCcccCCCCchHHHHHHH
Q 017904 61 VPVISVGNLTWGGNGKTPMVEFLA 84 (364)
Q Consensus 61 vPVIsVGNltvGGtGKTP~v~~L~ 84 (364)
.-|+++|. .|+|||+++..++
T Consensus 10 ~~i~v~G~---~~~GKssl~~~l~ 30 (181)
T 3tw8_B 10 FKLLIIGD---SGVGKSSLLLRFA 30 (181)
T ss_dssp EEEEEECC---TTSCHHHHHHHHC
T ss_pred eEEEEECC---CCCCHHHHHHHHh
Confidence 56889997 5999999988774
No 385
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=59.54 E-value=5.3 Score=34.02 Aligned_cols=22 Identities=27% Similarity=0.504 Sum_probs=18.0
Q ss_pred CcEEEEcCcccCCCCchHHHHHHHH
Q 017904 61 VPVISVGNLTWGGNGKTPMVEFLAH 85 (364)
Q Consensus 61 vPVIsVGNltvGGtGKTP~v~~L~~ 85 (364)
..|++||. .|+|||+++..+..
T Consensus 26 ~ki~vvG~---~~~GKSsli~~l~~ 47 (201)
T 2gco_A 26 KKLVIVGD---GACGKTCLLIVFSK 47 (201)
T ss_dssp EEEEEEES---TTSSHHHHHHHHHH
T ss_pred eEEEEECC---CCCCHHHHHHHHHh
Confidence 46899997 69999999877654
No 386
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=59.53 E-value=5.3 Score=33.43 Aligned_cols=22 Identities=23% Similarity=0.363 Sum_probs=18.2
Q ss_pred CcEEEEcCcccCCCCchHHHHHHHH
Q 017904 61 VPVISVGNLTWGGNGKTPMVEFLAH 85 (364)
Q Consensus 61 vPVIsVGNltvGGtGKTP~v~~L~~ 85 (364)
..|++||. .|+|||+++..+..
T Consensus 21 ~ki~v~G~---~~~GKSsli~~l~~ 42 (189)
T 1z06_A 21 FKIIVIGD---SNVGKTCLTYRFCA 42 (189)
T ss_dssp EEEEEECC---TTSSHHHHHHHHHH
T ss_pred EEEEEECC---CCCCHHHHHHHHHc
Confidence 46889997 59999999887754
No 387
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=59.46 E-value=5.2 Score=32.45 Aligned_cols=20 Identities=30% Similarity=0.546 Sum_probs=16.7
Q ss_pred cEEEEcCcccCCCCchHHHHHHH
Q 017904 62 PVISVGNLTWGGNGKTPMVEFLA 84 (364)
Q Consensus 62 PVIsVGNltvGGtGKTP~v~~L~ 84 (364)
.|++||. .|+|||+++..+.
T Consensus 4 ki~ivG~---~~~GKSsli~~l~ 23 (169)
T 3q85_A 4 KVMLVGE---SGVGKSTLAGTFG 23 (169)
T ss_dssp EEEEECS---TTSSHHHHHHHHH
T ss_pred EEEEECC---CCCCHHHHHHHHH
Confidence 5789996 5999999998774
No 388
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=59.22 E-value=5.8 Score=36.06 Aligned_cols=23 Identities=35% Similarity=0.520 Sum_probs=18.7
Q ss_pred EEEEcCcccCCCCchHHHHHHHHHH
Q 017904 63 VISVGNLTWGGNGKTPMVEFLAHCL 87 (364)
Q Consensus 63 VIsVGNltvGGtGKTP~v~~L~~~L 87 (364)
+|.|.+- -|+||||+...|++.|
T Consensus 11 ~i~i~G~--~GsGKsTla~~la~~l 33 (233)
T 3r20_A 11 VVAVDGP--AGTGKSSVSRGLARAL 33 (233)
T ss_dssp EEEEECC--TTSSHHHHHHHHHHHH
T ss_pred EEEEECC--CCCCHHHHHHHHHHHh
Confidence 5555555 4999999999999988
No 389
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=59.22 E-value=5.1 Score=38.65 Aligned_cols=46 Identities=11% Similarity=0.079 Sum_probs=32.5
Q ss_pred EEEEcCcccCCCCchHHHHHHHHHHHhC--CCceEEEecCCCCCchHHHHHHHh
Q 017904 63 VISVGNLTWGGNGKTPMVEFLAHCLADS--EISPLILTRGYAGGDEVRMLERHL 114 (364)
Q Consensus 63 VIsVGNltvGGtGKTP~v~~L~~~L~~~--g~kvaIlsRGYg~GDE~~lla~~~ 114 (364)
+.+.|. -|+|||+++..++...+++ |.+++.++-.-. -+.. .|+++
T Consensus 31 teI~G~---pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s-~~~~--ra~~l 78 (333)
T 3io5_A 31 LILAGP---SKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFG-ITPA--YLRSM 78 (333)
T ss_dssp EEEEES---SSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCC-CCHH--HHHHT
T ss_pred EEEECC---CCCCHHHHHHHHHHHHHhcCCCceEEEEeccch-hhHH--HHHHh
Confidence 445554 5999999999988887765 778888876543 2322 46666
No 390
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=59.11 E-value=4.9 Score=38.51 Aligned_cols=31 Identities=19% Similarity=0.153 Sum_probs=21.4
Q ss_pred cEEEEcCcccCCCCchHHHHHHHHHHHhCCCceEEEec
Q 017904 62 PVISVGNLTWGGNGKTPMVEFLAHCLADSEISPLILTR 99 (364)
Q Consensus 62 PVIsVGNltvGGtGKTP~v~~L~~~L~~~g~kvaIlsR 99 (364)
++|+|-+- -|+|||+++..|++.+. .-|||-
T Consensus 11 ~~i~i~Gp--tgsGKt~la~~La~~~~-----~~iis~ 41 (316)
T 3foz_A 11 KAIFLMGP--TASGKTALAIELRKILP-----VELISV 41 (316)
T ss_dssp EEEEEECC--TTSCHHHHHHHHHHHSC-----EEEEEC
T ss_pred cEEEEECC--CccCHHHHHHHHHHhCC-----CcEEec
Confidence 34444443 59999999999998862 346653
No 391
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=58.96 E-value=5.1 Score=35.30 Aligned_cols=21 Identities=29% Similarity=0.588 Sum_probs=17.8
Q ss_pred CcEEEEcCcccCCCCchHHHHHHH
Q 017904 61 VPVISVGNLTWGGNGKTPMVEFLA 84 (364)
Q Consensus 61 vPVIsVGNltvGGtGKTP~v~~L~ 84 (364)
..|++||+ .|+|||+++..++
T Consensus 38 ~kVvlvG~---~~vGKSSLl~r~~ 58 (211)
T 2g3y_A 38 YRVVLIGE---QGVGKSTLANIFA 58 (211)
T ss_dssp EEEEEECC---TTSSHHHHHHHHH
T ss_pred eEEEEECC---CCCCHHHHHHHHH
Confidence 57999997 6999999987654
No 392
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=58.91 E-value=5 Score=35.93 Aligned_cols=22 Identities=27% Similarity=0.448 Sum_probs=18.4
Q ss_pred CCcEEEEcCcccCCCCchHHHHHHH
Q 017904 60 PVPVISVGNLTWGGNGKTPMVEFLA 84 (364)
Q Consensus 60 ~vPVIsVGNltvGGtGKTP~v~~L~ 84 (364)
..-|++||. .|+|||+++..++
T Consensus 22 ~~~I~lvG~---~g~GKStl~n~l~ 43 (260)
T 2xtp_A 22 ELRIILVGK---TGTGKSAAGNSIL 43 (260)
T ss_dssp CEEEEEEEC---TTSCHHHHHHHHH
T ss_pred ceEEEEECC---CCCCHHHHHHHHh
Confidence 456889997 5999999998876
No 393
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=58.67 E-value=5.1 Score=33.40 Aligned_cols=22 Identities=27% Similarity=0.472 Sum_probs=18.2
Q ss_pred CcEEEEcCcccCCCCchHHHHHHHH
Q 017904 61 VPVISVGNLTWGGNGKTPMVEFLAH 85 (364)
Q Consensus 61 vPVIsVGNltvGGtGKTP~v~~L~~ 85 (364)
..|+.||. .|+|||+++..++.
T Consensus 5 ~ki~ivG~---~g~GKStLl~~l~~ 26 (172)
T 2gj8_A 5 MKVVIAGR---PNAGKSSLLNALAG 26 (172)
T ss_dssp EEEEEEES---TTSSHHHHHHHHHT
T ss_pred CEEEEECC---CCCCHHHHHHHHhC
Confidence 46889997 69999999988763
No 394
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=58.65 E-value=5.5 Score=33.85 Aligned_cols=23 Identities=22% Similarity=0.411 Sum_probs=18.5
Q ss_pred CCcEEEEcCcccCCCCchHHHHHHHH
Q 017904 60 PVPVISVGNLTWGGNGKTPMVEFLAH 85 (364)
Q Consensus 60 ~vPVIsVGNltvGGtGKTP~v~~L~~ 85 (364)
..-|++||. .|+|||+++..+..
T Consensus 8 ~~ki~v~G~---~~~GKSsli~~l~~ 30 (206)
T 2bcg_Y 8 LFKLLLIGN---SGVGKSCLLLRFSD 30 (206)
T ss_dssp EEEEEEEES---TTSSHHHHHHHHHH
T ss_pred ceEEEEECC---CCCCHHHHHHHHhc
Confidence 357899997 69999999887643
No 395
>1s1m_A CTP synthase; CTP synthetase, UTP:ammonia ligase (ADP-forming), cytidine 5 triphosphate synthase, ammonia lyase; 2.30A {Escherichia coli} SCOP: c.23.16.1 c.37.1.10 PDB: 2ad5_A*
Probab=58.58 E-value=9.3 Score=39.26 Aligned_cols=38 Identities=18% Similarity=0.171 Sum_probs=32.3
Q ss_pred cEEEEcCcccCCCCchHHHHHHHHHHHhCCCceEEEecC
Q 017904 62 PVISVGNLTWGGNGKTPMVEFLAHCLADSEISPLILTRG 100 (364)
Q Consensus 62 PVIsVGNltvGGtGKTP~v~~L~~~L~~~g~kvaIlsRG 100 (364)
.+++-|+. +-|.||+.++..|++.|+++|++|+...-.
T Consensus 5 ~i~v~gg~-~s~~gk~~~~~~l~~~l~~~g~~v~~~k~~ 42 (545)
T 1s1m_A 5 YIFVTGGV-VSSLGKGIAAASLAAILEARGLNVTIMKLD 42 (545)
T ss_dssp EEEEEECS-SSCSCHHHHHHHHHHHHHTTTCCEEEEEEE
T ss_pred EEEEeCCc-ccCcchHHHHHHHHHHHHhCCceeeeeecc
Confidence 45666554 579999999999999999999999999763
No 396
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=58.48 E-value=5.3 Score=33.38 Aligned_cols=22 Identities=32% Similarity=0.368 Sum_probs=18.6
Q ss_pred CCcEEEEcCcccCCCCchHHHHHHH
Q 017904 60 PVPVISVGNLTWGGNGKTPMVEFLA 84 (364)
Q Consensus 60 ~vPVIsVGNltvGGtGKTP~v~~L~ 84 (364)
..-|++||+ .|+|||+++..+.
T Consensus 16 ~~~i~v~G~---~~~GKssl~~~l~ 37 (187)
T 1zj6_A 16 EHKVIIVGL---DNAGKTTILYQFS 37 (187)
T ss_dssp CEEEEEEES---TTSSHHHHHHHHH
T ss_pred ccEEEEECC---CCCCHHHHHHHHh
Confidence 357999997 5999999998776
No 397
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=58.43 E-value=5.7 Score=33.36 Aligned_cols=22 Identities=23% Similarity=0.398 Sum_probs=18.1
Q ss_pred CcEEEEcCcccCCCCchHHHHHHHH
Q 017904 61 VPVISVGNLTWGGNGKTPMVEFLAH 85 (364)
Q Consensus 61 vPVIsVGNltvGGtGKTP~v~~L~~ 85 (364)
+.|++||. .|+|||+++..+..
T Consensus 22 ~ki~v~G~---~~~GKSsli~~l~~ 43 (191)
T 2a5j_A 22 FKYIIIGD---TGVGKSCLLLQFTD 43 (191)
T ss_dssp EEEEEESS---TTSSHHHHHHHHHH
T ss_pred eEEEEECc---CCCCHHHHHHHHhc
Confidence 56899996 69999999887753
No 398
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=58.42 E-value=5.7 Score=33.37 Aligned_cols=23 Identities=26% Similarity=0.525 Sum_probs=18.8
Q ss_pred CCcEEEEcCcccCCCCchHHHHHHHH
Q 017904 60 PVPVISVGNLTWGGNGKTPMVEFLAH 85 (364)
Q Consensus 60 ~vPVIsVGNltvGGtGKTP~v~~L~~ 85 (364)
.+.|++||+ .|+|||+++..+..
T Consensus 23 ~~ki~~vG~---~~~GKSsl~~~l~~ 45 (194)
T 3reg_A 23 ALKIVVVGD---GAVGKTCLLLAFSK 45 (194)
T ss_dssp EEEEEEECS---TTSSHHHHHHHHHH
T ss_pred eeEEEEECc---CCCCHHHHHHHHhc
Confidence 467999997 59999999887653
No 399
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=58.38 E-value=8.8 Score=35.39 Aligned_cols=32 Identities=22% Similarity=0.326 Sum_probs=22.8
Q ss_pred cEEEEcCcccCCCCchHHHHHHHHHHHhCCCceEEEe
Q 017904 62 PVISVGNLTWGGNGKTPMVEFLAHCLADSEISPLILT 98 (364)
Q Consensus 62 PVIsVGNltvGGtGKTP~v~~L~~~L~~~g~kvaIls 98 (364)
.++.+|+= -|||||.++..+++.+ |..+.-++
T Consensus 49 ~~~L~~G~--~G~GKT~la~~la~~l---~~~~~~i~ 80 (324)
T 3u61_B 49 HIILHSPS--PGTGKTTVAKALCHDV---NADMMFVN 80 (324)
T ss_dssp SEEEECSS--TTSSHHHHHHHHHHHT---TEEEEEEE
T ss_pred eEEEeeCc--CCCCHHHHHHHHHHHh---CCCEEEEc
Confidence 45666643 3999999999999888 44444444
No 400
>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0
Probab=58.38 E-value=45 Score=30.35 Aligned_cols=75 Identities=17% Similarity=0.116 Sum_probs=42.3
Q ss_pred CCCCchHHHHHHHHHHHhCCCceEEEecCCCCCchHH-HHHHHhCCCCEEEeccccchhH-HHhhhcCCCCEEEEcCCC
Q 017904 72 GGNGKTPMVEFLAHCLADSEISPLILTRGYAGGDEVR-MLERHLLERPAKIGKNCINPKV-GSHLKSGKIGAVILDDGM 148 (364)
Q Consensus 72 GGtGKTP~v~~L~~~L~~~g~kvaIlsRGYg~GDE~~-lla~~~~~~~v~v~~~~~~~~~-~~~~~~~~~dviIlDDgf 148 (364)
|||| -+=.++++.|.++|++|.++.|.-...++.. .+....+.-...+.+|..+... ..++...++|+||---|.
T Consensus 12 GatG--~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih~A~~ 88 (341)
T 3enk_A 12 GGAG--YIGSHTAVELLAHGYDVVIADNLVNSKREAIARIEKITGKTPAFHETDVSDERALARIFDAHPITAAIHFAAL 88 (341)
T ss_dssp TTTS--HHHHHHHHHHHHTTCEEEEECCCSSSCTHHHHHHHHHHSCCCEEECCCTTCHHHHHHHHHHSCCCEEEECCCC
T ss_pred cCCc--HHHHHHHHHHHHCCCcEEEEecCCcchHHHHHHHHhhcCCCceEEEeecCCHHHHHHHHhccCCcEEEECccc
Confidence 4555 2345788999999999999998765444432 1222222112333344333332 334444578998876554
No 401
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=58.36 E-value=5.7 Score=33.40 Aligned_cols=24 Identities=25% Similarity=0.332 Sum_probs=19.7
Q ss_pred CCCcEEEEcCcccCCCCchHHHHHHHH
Q 017904 59 LPVPVISVGNLTWGGNGKTPMVEFLAH 85 (364)
Q Consensus 59 ~~vPVIsVGNltvGGtGKTP~v~~L~~ 85 (364)
..+.|++||. .|+|||+++..+..
T Consensus 22 ~~~ki~v~G~---~~~GKSsli~~l~~ 45 (191)
T 3dz8_A 22 YMFKLLIIGN---SSVGKTSFLFRYAD 45 (191)
T ss_dssp ECEEEEEEES---TTSSHHHHHHHHHH
T ss_pred eeeEEEEECC---CCcCHHHHHHHHhc
Confidence 3467999997 59999999988764
No 402
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=58.34 E-value=6.7 Score=37.91 Aligned_cols=26 Identities=19% Similarity=0.474 Sum_probs=20.6
Q ss_pred CCcEEEEcCcccCCCCchHHHHHHHHHHHh
Q 017904 60 PVPVISVGNLTWGGNGKTPMVEFLAHCLAD 89 (364)
Q Consensus 60 ~vPVIsVGNltvGGtGKTP~v~~L~~~L~~ 89 (364)
.+.|+.+|. ||+||||++..+ +.+..
T Consensus 33 ~~killlG~---~~SGKST~~kq~-~i~~~ 58 (362)
T 1zcb_A 33 LVKILLLGA---GESGKSTFLKQM-RIIHG 58 (362)
T ss_dssp CEEEEEECS---TTSSHHHHHHHH-HHHHS
T ss_pred ccEEEEECC---CCCcHHHHHHHH-HHHhC
Confidence 578999994 999999999877 44443
No 403
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=58.32 E-value=7.2 Score=36.71 Aligned_cols=25 Identities=32% Similarity=0.406 Sum_probs=21.5
Q ss_pred CcEEEEcCcccCCCCchHHHHHHHHHHH
Q 017904 61 VPVISVGNLTWGGNGKTPMVEFLAHCLA 88 (364)
Q Consensus 61 vPVIsVGNltvGGtGKTP~v~~L~~~L~ 88 (364)
-.++.+|. =|||||+++..++..+.
T Consensus 52 ~~~ll~Gp---~G~GKTTLa~~ia~~l~ 76 (334)
T 1in4_A 52 DHVLLAGP---PGLGKTTLAHIIASELQ 76 (334)
T ss_dssp CCEEEESS---TTSSHHHHHHHHHHHHT
T ss_pred CeEEEECC---CCCcHHHHHHHHHHHhC
Confidence 46888996 49999999999999883
No 404
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=58.29 E-value=4.5 Score=35.37 Aligned_cols=21 Identities=19% Similarity=0.398 Sum_probs=17.3
Q ss_pred CcEEEEcCcccCCCCchHHHHHHH
Q 017904 61 VPVISVGNLTWGGNGKTPMVEFLA 84 (364)
Q Consensus 61 vPVIsVGNltvGGtGKTP~v~~L~ 84 (364)
.-|++||+ .|+|||+++..++
T Consensus 30 ~kI~vvG~---~~vGKSsLin~l~ 50 (228)
T 2qu8_A 30 KTIILSGA---PNVGKSSFMNIVS 50 (228)
T ss_dssp EEEEEECS---TTSSHHHHHHHHT
T ss_pred CEEEEECC---CCCCHHHHHHHHh
Confidence 35889997 5999999988764
No 405
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=58.28 E-value=22 Score=37.40 Aligned_cols=33 Identities=30% Similarity=0.377 Sum_probs=26.6
Q ss_pred cEEEEcCcccCCCCchHHHHHHHHHHHhCCCceEEE
Q 017904 62 PVISVGNLTWGGNGKTPMVEFLAHCLADSEISPLIL 97 (364)
Q Consensus 62 PVIsVGNltvGGtGKTP~v~~L~~~L~~~g~kvaIl 97 (364)
+++.+|. -|||||.++.++++.+...+.....+
T Consensus 523 ~~Ll~Gp---~GtGKT~lA~ala~~l~~~~~~~i~i 555 (758)
T 3pxi_A 523 SFIFLGP---TGVGKTELARALAESIFGDEESMIRI 555 (758)
T ss_dssp EEEEESC---TTSSHHHHHHHHHHHHHSCTTCEEEE
T ss_pred EEEEECC---CCCCHHHHHHHHHHHhcCCCcceEEE
Confidence 6899996 59999999999999996655555444
No 406
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=58.13 E-value=5.3 Score=36.52 Aligned_cols=22 Identities=18% Similarity=0.351 Sum_probs=16.7
Q ss_pred EEEEcCcccCCCCchHHHHHHHHHH
Q 017904 63 VISVGNLTWGGNGKTPMVEFLAHCL 87 (364)
Q Consensus 63 VIsVGNltvGGtGKTP~v~~L~~~L 87 (364)
|+.+| . -||||||+...|++.+
T Consensus 5 I~l~G-~--~GsGKST~a~~L~~~~ 26 (301)
T 1ltq_A 5 ILTIG-C--PGSGKSTWAREFIAKN 26 (301)
T ss_dssp EEEEC-C--TTSSHHHHHHHHHHHS
T ss_pred EEEEC-C--CCCCHHHHHHHHHHhC
Confidence 44555 4 6999999999998853
No 407
>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*
Probab=58.10 E-value=22 Score=31.55 Aligned_cols=79 Identities=14% Similarity=0.078 Sum_probs=44.8
Q ss_pred CCCCchHHHHHHHHHHHhCCCceEEEecCCCCCchHHHHHHHhCC-CCEEEeccccchhH-HHhh----hc-CCCCEEEE
Q 017904 72 GGNGKTPMVEFLAHCLADSEISPLILTRGYAGGDEVRMLERHLLE-RPAKIGKNCINPKV-GSHL----KS-GKIGAVIL 144 (364)
Q Consensus 72 GGtGKTP~v~~L~~~L~~~g~kvaIlsRGYg~GDE~~lla~~~~~-~~v~v~~~~~~~~~-~~~~----~~-~~~dviIl 144 (364)
||+|-+=+=..+++.|.++|++|.++.|.-...++...+.+..++ -...+.+|.-+... ..++ .. .++|++|.
T Consensus 14 Gasg~~GIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~id~li~ 93 (266)
T 3oig_A 14 GVANKRSIAWGIARSLHEAGARLIFTYAGERLEKSVHELAGTLDRNDSIILPCDVTNDAEIETCFASIKEQVGVIHGIAH 93 (266)
T ss_dssp CCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHTSSSCCCEEEECCCSSSHHHHHHHHHHHHHHSCCCEEEE
T ss_pred cCCCCCcHHHHHHHHHHHCCCEEEEecCchHHHHHHHHHHHhcCCCCceEEeCCCCCHHHHHHHHHHHHHHhCCeeEEEE
Confidence 566655577789999999999999998863211222223333333 12344454333321 1111 11 36898888
Q ss_pred cCCCCC
Q 017904 145 DDGMQH 150 (364)
Q Consensus 145 DDgfQh 150 (364)
--|..+
T Consensus 94 ~Ag~~~ 99 (266)
T 3oig_A 94 CIAFAN 99 (266)
T ss_dssp CCCCCC
T ss_pred cccccc
Confidence 877665
No 408
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=57.94 E-value=8.3 Score=35.32 Aligned_cols=25 Identities=16% Similarity=0.416 Sum_probs=20.7
Q ss_pred cEEEEcCcccCCCCchHHHHHHHHHHHh
Q 017904 62 PVISVGNLTWGGNGKTPMVEFLAHCLAD 89 (364)
Q Consensus 62 PVIsVGNltvGGtGKTP~v~~L~~~L~~ 89 (364)
-|.++|- -|+||||++..++..+..
T Consensus 27 ~v~i~Gp---~GsGKSTll~~l~g~~~~ 51 (261)
T 2eyu_A 27 LILVTGP---TGSGKSTTIASMIDYINQ 51 (261)
T ss_dssp EEEEECS---TTCSHHHHHHHHHHHHHH
T ss_pred EEEEECC---CCccHHHHHHHHHHhCCC
Confidence 4667774 599999999999999865
No 409
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=57.88 E-value=8.3 Score=38.72 Aligned_cols=33 Identities=24% Similarity=0.194 Sum_probs=26.3
Q ss_pred CCcEEEEcCcccCCCCchHHHHHHHHHHHhCCCceEEEe
Q 017904 60 PVPVISVGNLTWGGNGKTPMVEFLAHCLADSEISPLILT 98 (364)
Q Consensus 60 ~vPVIsVGNltvGGtGKTP~v~~L~~~L~~~g~kvaIls 98 (364)
+.+++..|- -|||||+++..+++.+ |+.+.-+.
T Consensus 77 ~~~lLL~Gp---pGtGKTtla~~la~~l---~~~~i~in 109 (516)
T 1sxj_A 77 FRAAMLYGP---PGIGKTTAAHLVAQEL---GYDILEQN 109 (516)
T ss_dssp CSEEEEECS---TTSSHHHHHHHHHHHT---TCEEEEEC
T ss_pred CcEEEEECC---CCCCHHHHHHHHHHHc---CCCEEEEe
Confidence 357888885 5999999999999988 66665553
No 410
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=57.88 E-value=7.3 Score=34.68 Aligned_cols=23 Identities=22% Similarity=0.427 Sum_probs=18.8
Q ss_pred cEEEEcCcccCCCCchHHHHHHHHHH
Q 017904 62 PVISVGNLTWGGNGKTPMVEFLAHCL 87 (364)
Q Consensus 62 PVIsVGNltvGGtGKTP~v~~L~~~L 87 (364)
-|..+|. -|+||||++..|++.+
T Consensus 29 ~i~l~G~---~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 29 RAVILGP---PGSGKGTVCQRIAQNF 51 (246)
T ss_dssp EEEEECC---TTSSHHHHHHHHHHHH
T ss_pred EEEEECC---CCCCHHHHHHHHHHHh
Confidence 3556664 5999999999999887
No 411
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=57.82 E-value=5.6 Score=32.82 Aligned_cols=21 Identities=14% Similarity=0.215 Sum_probs=17.8
Q ss_pred CcEEEEcCcccCCCCchHHHHHHH
Q 017904 61 VPVISVGNLTWGGNGKTPMVEFLA 84 (364)
Q Consensus 61 vPVIsVGNltvGGtGKTP~v~~L~ 84 (364)
.-|++||. .|+|||+++..+.
T Consensus 7 ~ki~~~G~---~~~GKSsli~~l~ 27 (181)
T 3t5g_A 7 RKIAILGY---RSVGKSSLTIQFV 27 (181)
T ss_dssp EEEEEEES---TTSSHHHHHHHHH
T ss_pred EEEEEECc---CCCCHHHHHHHHH
Confidence 46889997 5999999988876
No 412
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=57.64 E-value=7.8 Score=37.44 Aligned_cols=33 Identities=12% Similarity=0.348 Sum_probs=24.0
Q ss_pred cEEEEcCcccCCCCchHHHHHHHHHHHhC-CCceEEE
Q 017904 62 PVISVGNLTWGGNGKTPMVEFLAHCLADS-EISPLIL 97 (364)
Q Consensus 62 PVIsVGNltvGGtGKTP~v~~L~~~L~~~-g~kvaIl 97 (364)
-|.++|- -|+||||++..++.++... .-++.++
T Consensus 138 ~i~ivG~---~GsGKTTll~~l~~~~~~~~~g~I~~~ 171 (372)
T 2ewv_A 138 LILVTGP---TGSGKSTTIASMIDYINQTKSYHIITI 171 (372)
T ss_dssp EEEEECS---SSSSHHHHHHHHHHHHHHHSCCEEEEE
T ss_pred EEEEECC---CCCCHHHHHHHHHhhcCcCCCcEEEEe
Confidence 4667774 5999999999999998753 2344443
No 413
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=57.59 E-value=5.9 Score=35.51 Aligned_cols=21 Identities=29% Similarity=0.580 Sum_probs=17.5
Q ss_pred cEEEEcCcccCCCCchHHHHHHHH
Q 017904 62 PVISVGNLTWGGNGKTPMVEFLAH 85 (364)
Q Consensus 62 PVIsVGNltvGGtGKTP~v~~L~~ 85 (364)
.|-..|++ |||||++..+|.+
T Consensus 11 ~iglTGgi---gsGKStv~~~l~~ 31 (210)
T 4i1u_A 11 AIGLTGGI---GSGKTTVADLFAA 31 (210)
T ss_dssp EEEEECCT---TSCHHHHHHHHHH
T ss_pred EEEEECCC---CCCHHHHHHHHHH
Confidence 56788888 9999999887765
No 414
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=57.59 E-value=5.8 Score=35.88 Aligned_cols=23 Identities=17% Similarity=0.290 Sum_probs=20.3
Q ss_pred EEEEcCcccCCCCchHHHHHHHHHHH
Q 017904 63 VISVGNLTWGGNGKTPMVEFLAHCLA 88 (364)
Q Consensus 63 VIsVGNltvGGtGKTP~v~~L~~~L~ 88 (364)
++..|. -|||||+++..+++.+.
T Consensus 61 ili~GP---PGtGKTt~a~ala~~l~ 83 (212)
T 1tue_A 61 LVFCGP---ANTGKSYFGMSFIHFIQ 83 (212)
T ss_dssp EEEESC---GGGCHHHHHHHHHHHHT
T ss_pred EEEECC---CCCCHHHHHHHHHHHhC
Confidence 788886 59999999999999883
No 415
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=57.47 E-value=6.9 Score=39.37 Aligned_cols=36 Identities=25% Similarity=0.406 Sum_probs=27.0
Q ss_pred CCCCCcEEEEcCcccCCCCchHHHHHHHHHHHhCCCceEEEe
Q 017904 57 HRLPVPVISVGNLTWGGNGKTPMVEFLAHCLADSEISPLILT 98 (364)
Q Consensus 57 ~~~~vPVIsVGNltvGGtGKTP~v~~L~~~L~~~g~kvaIls 98 (364)
.+.|.+|+.+|- -|||||.++..++..+ |....-++
T Consensus 46 ~~~p~gvLL~Gp---pGtGKT~Laraia~~~---~~~f~~is 81 (476)
T 2ce7_A 46 ARMPKGILLVGP---PGTGKTLLARAVAGEA---NVPFFHIS 81 (476)
T ss_dssp CCCCSEEEEECC---TTSSHHHHHHHHHHHH---TCCEEEEE
T ss_pred CCCCCeEEEECC---CCCCHHHHHHHHHHHc---CCCeeeCC
Confidence 345677999996 5999999999999876 34444443
No 416
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=57.46 E-value=3.7 Score=38.22 Aligned_cols=24 Identities=29% Similarity=0.249 Sum_probs=21.7
Q ss_pred CcEEEEcCcccCCCCchHHHHHHHHHH
Q 017904 61 VPVISVGNLTWGGNGKTPMVEFLAHCL 87 (364)
Q Consensus 61 vPVIsVGNltvGGtGKTP~v~~L~~~L 87 (364)
.+|+..|. -|||||.++..+++.+
T Consensus 47 ~~vll~G~---pGtGKT~la~~la~~~ 70 (331)
T 2r44_A 47 GHILLEGV---PGLAKTLSVNTLAKTM 70 (331)
T ss_dssp CCEEEESC---CCHHHHHHHHHHHHHT
T ss_pred CeEEEECC---CCCcHHHHHHHHHHHh
Confidence 48999997 4999999999999987
No 417
>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*
Probab=57.46 E-value=39 Score=30.96 Aligned_cols=30 Identities=20% Similarity=0.037 Sum_probs=23.4
Q ss_pred CCCCchHHHHHHHHHHHhCCCceEEEecCCCC
Q 017904 72 GGNGKTPMVEFLAHCLADSEISPLILTRGYAG 103 (364)
Q Consensus 72 GGtGKTP~v~~L~~~L~~~g~kvaIlsRGYg~ 103 (364)
||||- +=.++++.|.++|++|.++.|.-.+
T Consensus 32 GatG~--iG~~l~~~L~~~g~~V~~~~r~~~~ 61 (351)
T 3ruf_A 32 GVAGF--IGSNLLEKLLKLNQVVIGLDNFSTG 61 (351)
T ss_dssp TTTSH--HHHHHHHHHHHTTCEEEEEECCSSC
T ss_pred CCCcH--HHHHHHHHHHHCCCEEEEEeCCCCC
Confidence 56663 4467889998999999999997543
No 418
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=57.27 E-value=6.1 Score=33.49 Aligned_cols=23 Identities=17% Similarity=0.369 Sum_probs=18.8
Q ss_pred CCcEEEEcCcccCCCCchHHHHHHHH
Q 017904 60 PVPVISVGNLTWGGNGKTPMVEFLAH 85 (364)
Q Consensus 60 ~vPVIsVGNltvGGtGKTP~v~~L~~ 85 (364)
...|++||. .|+|||+++..++.
T Consensus 28 ~~ki~v~G~---~~~GKSsli~~l~~ 50 (199)
T 2p5s_A 28 AYKIVLAGD---AAVGKSSFLMRLCK 50 (199)
T ss_dssp CEEEEEESS---TTSSHHHHHHHHHH
T ss_pred CeEEEEECc---CCCCHHHHHHHHHh
Confidence 357899997 59999999987753
No 419
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=57.01 E-value=5.4 Score=36.23 Aligned_cols=20 Identities=40% Similarity=0.488 Sum_probs=17.0
Q ss_pred cEEEEcCcccCCCCchHHHHHHH
Q 017904 62 PVISVGNLTWGGNGKTPMVEFLA 84 (364)
Q Consensus 62 PVIsVGNltvGGtGKTP~v~~L~ 84 (364)
-|..+|| .|+|||+++..|.
T Consensus 5 ~i~lvG~---~g~GKTTL~n~l~ 24 (271)
T 3k53_A 5 TVALVGN---PNVGKTTIFNALT 24 (271)
T ss_dssp EEEEEEC---SSSSHHHHHHHHH
T ss_pred EEEEECC---CCCCHHHHHHHHh
Confidence 4788998 5999999998874
No 420
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=56.87 E-value=6.1 Score=33.81 Aligned_cols=22 Identities=27% Similarity=0.516 Sum_probs=18.4
Q ss_pred CcEEEEcCcccCCCCchHHHHHHHH
Q 017904 61 VPVISVGNLTWGGNGKTPMVEFLAH 85 (364)
Q Consensus 61 vPVIsVGNltvGGtGKTP~v~~L~~ 85 (364)
..|++||. .|+|||+++..+..
T Consensus 26 ~ki~vvG~---~~~GKSsli~~l~~ 47 (207)
T 2fv8_A 26 KKLVVVGD---GACGKTCLLIVFSK 47 (207)
T ss_dssp EEEEEEEC---TTSSHHHHHHHHHH
T ss_pred cEEEEECc---CCCCHHHHHHHHhc
Confidence 47899997 69999999887754
No 421
>3lyu_A Putative hydrogenase; the C-terminal has AN alpha-beta fold, structural genomics, PSI-2, protein structure initiative; 2.30A {Pyrococcus furiosus}
Probab=56.81 E-value=7.4 Score=32.15 Aligned_cols=36 Identities=11% Similarity=0.110 Sum_probs=28.1
Q ss_pred CCcEEEEcCcccCCCCchHHHHHHHHHHHhCCCceEEEecCCC
Q 017904 60 PVPVISVGNLTWGGNGKTPMVEFLAHCLADSEISPLILTRGYA 102 (364)
Q Consensus 60 ~vPVIsVGNltvGGtGKTP~v~~L~~~L~~~g~kvaIlsRGYg 102 (364)
.-|++.|+ ||+|=||+.. +++.+.++|.++-++ |..
T Consensus 18 ~~~~llIa----GG~GiaPl~s-m~~~l~~~~~~v~l~--g~R 53 (142)
T 3lyu_A 18 FGKILAIG----AYTGIVEVYP-IAKAWQEIGNDVTTL--HVT 53 (142)
T ss_dssp CSEEEEEE----ETTHHHHHHH-HHHHHHHTTCEEEEE--EEE
T ss_pred CCeEEEEE----CcCcHHHHHH-HHHHHHhcCCcEEEE--EeC
Confidence 35899998 9999999876 677777777776666 654
No 422
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=56.69 E-value=6.2 Score=33.50 Aligned_cols=22 Identities=23% Similarity=0.302 Sum_probs=18.4
Q ss_pred CcEEEEcCcccCCCCchHHHHHHHH
Q 017904 61 VPVISVGNLTWGGNGKTPMVEFLAH 85 (364)
Q Consensus 61 vPVIsVGNltvGGtGKTP~v~~L~~ 85 (364)
.-|++||. .|+|||+++..+..
T Consensus 25 ~ki~vvG~---~~~GKSsli~~l~~ 46 (201)
T 3oes_A 25 RKVVILGY---RCVGKTSLAHQFVE 46 (201)
T ss_dssp EEEEEEES---TTSSHHHHHHHHHH
T ss_pred EEEEEECC---CCcCHHHHHHHHHh
Confidence 46899997 69999999988764
No 423
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=56.54 E-value=6 Score=33.43 Aligned_cols=21 Identities=29% Similarity=0.431 Sum_probs=17.6
Q ss_pred CcEEEEcCcccCCCCchHHHHHHH
Q 017904 61 VPVISVGNLTWGGNGKTPMVEFLA 84 (364)
Q Consensus 61 vPVIsVGNltvGGtGKTP~v~~L~ 84 (364)
.-|++||. .|+|||+++..+.
T Consensus 9 ~ki~v~G~---~~~GKSsli~~l~ 29 (203)
T 1zbd_A 9 FKILIIGN---SSVGKTSFLFRYA 29 (203)
T ss_dssp EEEEEECS---TTSSHHHHHHHHH
T ss_pred eEEEEECC---CCCCHHHHHHHHh
Confidence 56899997 5999999988764
No 424
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=56.53 E-value=15 Score=39.32 Aligned_cols=40 Identities=28% Similarity=0.321 Sum_probs=29.5
Q ss_pred ccCCCCCcEEEEcCcccCCCCchHHHHHHHHHHHhCCCceEEE
Q 017904 55 SKHRLPVPVISVGNLTWGGNGKTPMVEFLAHCLADSEISPLIL 97 (364)
Q Consensus 55 ~~~~~~vPVIsVGNltvGGtGKTP~v~~L~~~L~~~g~kvaIl 97 (364)
.+.+...+|+.+|. -|||||.++.++++.+...+.....+
T Consensus 583 ~~~~p~~~vLl~Gp---~GtGKT~lA~~la~~~~~~~~~~i~i 622 (854)
T 1qvr_A 583 DPNRPIGSFLFLGP---TGVGKTELAKTLAATLFDTEEAMIRI 622 (854)
T ss_dssp CSSSCSEEEEEBSC---SSSSHHHHHHHHHHHHHSSGGGEEEE
T ss_pred CCCCCceEEEEECC---CCCCHHHHHHHHHHHhcCCCCcEEEE
Confidence 33443348899997 49999999999999997655554444
No 425
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=56.51 E-value=5.4 Score=33.22 Aligned_cols=22 Identities=32% Similarity=0.356 Sum_probs=18.2
Q ss_pred CcEEEEcCcccCCCCchHHHHHHHH
Q 017904 61 VPVISVGNLTWGGNGKTPMVEFLAH 85 (364)
Q Consensus 61 vPVIsVGNltvGGtGKTP~v~~L~~ 85 (364)
.-|++||. .|+|||+++..+..
T Consensus 22 ~~i~v~G~---~~~GKSsli~~l~~ 43 (181)
T 2h17_A 22 HKVIIVGL---DNAGKTTILYQFSM 43 (181)
T ss_dssp EEEEEEEE---TTSSHHHHHHHHHT
T ss_pred eEEEEECC---CCCCHHHHHHHHhc
Confidence 56899997 59999999887753
No 426
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=56.40 E-value=6.5 Score=32.66 Aligned_cols=21 Identities=19% Similarity=0.534 Sum_probs=17.6
Q ss_pred CcEEEEcCcccCCCCchHHHHHHH
Q 017904 61 VPVISVGNLTWGGNGKTPMVEFLA 84 (364)
Q Consensus 61 vPVIsVGNltvGGtGKTP~v~~L~ 84 (364)
+.|++||. .|+|||+++..+.
T Consensus 16 ~~i~v~G~---~~~GKssli~~l~ 36 (195)
T 1x3s_A 16 LKILIIGE---SGVGKSSLLLRFT 36 (195)
T ss_dssp EEEEEECS---TTSSHHHHHHHHH
T ss_pred eEEEEECC---CCCCHHHHHHHHH
Confidence 56889996 6999999988774
No 427
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=56.20 E-value=5.8 Score=33.64 Aligned_cols=22 Identities=27% Similarity=0.404 Sum_probs=18.3
Q ss_pred CCcEEEEcCcccCCCCchHHHHHHH
Q 017904 60 PVPVISVGNLTWGGNGKTPMVEFLA 84 (364)
Q Consensus 60 ~vPVIsVGNltvGGtGKTP~v~~L~ 84 (364)
.+.|++||. .|+|||+++..+.
T Consensus 29 ~~ki~v~G~---~~vGKSsLi~~l~ 50 (192)
T 2b6h_A 29 QMRILMVGL---DAAGKTTILYKLK 50 (192)
T ss_dssp CEEEEEEES---TTSSHHHHHHHHC
T ss_pred ccEEEEECC---CCCCHHHHHHHHH
Confidence 357999997 6999999998764
No 428
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=56.11 E-value=5.2 Score=34.19 Aligned_cols=21 Identities=24% Similarity=0.420 Sum_probs=17.8
Q ss_pred CcEEEEcCcccCCCCchHHHHHHH
Q 017904 61 VPVISVGNLTWGGNGKTPMVEFLA 84 (364)
Q Consensus 61 vPVIsVGNltvGGtGKTP~v~~L~ 84 (364)
..|+.||. .|+|||+++..+.
T Consensus 26 ~ki~lvG~---~~vGKSsLi~~l~ 46 (198)
T 1f6b_A 26 GKLVFLGL---DNAGKTTLLHMLK 46 (198)
T ss_dssp EEEEEEEE---TTSSHHHHHHHHS
T ss_pred cEEEEECC---CCCCHHHHHHHHh
Confidence 46899997 6999999998774
No 429
>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*
Probab=56.01 E-value=35 Score=31.48 Aligned_cols=74 Identities=18% Similarity=0.114 Sum_probs=42.0
Q ss_pred CCCCchHHHHHHHHHHHhCCCceEEEecCCCCCchHHH-HHH-HhCCCCEEEeccccchhH-HHhhhcCCCCEEEEcCCC
Q 017904 72 GGNGKTPMVEFLAHCLADSEISPLILTRGYAGGDEVRM-LER-HLLERPAKIGKNCINPKV-GSHLKSGKIGAVILDDGM 148 (364)
Q Consensus 72 GGtGKTP~v~~L~~~L~~~g~kvaIlsRGYg~GDE~~l-la~-~~~~~~v~v~~~~~~~~~-~~~~~~~~~dviIlDDgf 148 (364)
||||. +=.++++.|.++|++|.+++|.-....+... +.. .-+++.+ +.+|..+... ...+.+.++|+||.=-|.
T Consensus 17 GatG~--iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~~~~l~~~~v~~-~~~Dl~d~~~l~~~~~~~~~d~Vi~~a~~ 93 (346)
T 3i6i_A 17 GATGF--IGQFVATASLDAHRPTYILARPGPRSPSKAKIFKALEDKGAII-VYGLINEQEAMEKILKEHEIDIVVSTVGG 93 (346)
T ss_dssp CTTSH--HHHHHHHHHHHTTCCEEEEECSSCCCHHHHHHHHHHHHTTCEE-EECCTTCHHHHHHHHHHTTCCEEEECCCG
T ss_pred CCCcH--HHHHHHHHHHHCCCCEEEEECCCCCChhHHHHHHHHHhCCcEE-EEeecCCHHHHHHHHhhCCCCEEEECCch
Confidence 57773 4567888888999999999997422112111 111 1234433 3334333332 334555578988876554
No 430
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=55.63 E-value=8.7 Score=37.92 Aligned_cols=33 Identities=24% Similarity=0.261 Sum_probs=24.2
Q ss_pred cEEEEcCcccCCCCchHHHHHHHHHHHhCCCceEEE
Q 017904 62 PVISVGNLTWGGNGKTPMVEFLAHCLADSEISPLIL 97 (364)
Q Consensus 62 PVIsVGNltvGGtGKTP~v~~L~~~L~~~g~kvaIl 97 (364)
-|.++|- -|+||||++..++.++....-++.++
T Consensus 169 ii~I~Gp---nGSGKTTlL~allg~l~~~~g~I~~~ 201 (418)
T 1p9r_A 169 IILVTGP---TGSGKSTTLYAGLQELNSSERNILTV 201 (418)
T ss_dssp EEEEECS---TTSCHHHHHHHHHHHHCCTTSCEEEE
T ss_pred eEEEECC---CCCCHHHHHHHHHhhcCCCCCEEEEe
Confidence 3556664 59999999999999986544455554
No 431
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=55.56 E-value=6.7 Score=32.88 Aligned_cols=22 Identities=32% Similarity=0.501 Sum_probs=18.4
Q ss_pred CcEEEEcCcccCCCCchHHHHHHHH
Q 017904 61 VPVISVGNLTWGGNGKTPMVEFLAH 85 (364)
Q Consensus 61 vPVIsVGNltvGGtGKTP~v~~L~~ 85 (364)
.-|+++|. .|+|||+++..+..
T Consensus 19 ~ki~v~G~---~~~GKssli~~l~~ 40 (194)
T 2atx_A 19 LKCVVVGD---GAVGKTCLLMSYAN 40 (194)
T ss_dssp EEEEEEEC---TTSSHHHHHHHHHH
T ss_pred EEEEEECC---CCCCHHHHHHHHhc
Confidence 57899997 59999999988764
No 432
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=55.42 E-value=7.2 Score=35.53 Aligned_cols=26 Identities=31% Similarity=0.284 Sum_probs=22.0
Q ss_pred cEEEEcCcccCCCCchHHHHHHHHHHHhC
Q 017904 62 PVISVGNLTWGGNGKTPMVEFLAHCLADS 90 (364)
Q Consensus 62 PVIsVGNltvGGtGKTP~v~~L~~~L~~~ 90 (364)
+++..|. .|||||+++..+++.+...
T Consensus 48 ~~ll~G~---~G~GKT~la~~l~~~l~~~ 73 (327)
T 1iqp_A 48 HLLFAGP---PGVGKTTAALALARELFGE 73 (327)
T ss_dssp EEEEESC---TTSSHHHHHHHHHHHHHGG
T ss_pred eEEEECc---CCCCHHHHHHHHHHHhcCC
Confidence 4888885 6999999999999998643
No 433
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=55.38 E-value=11 Score=37.90 Aligned_cols=33 Identities=18% Similarity=0.404 Sum_probs=25.3
Q ss_pred EEEEcCcccCCCCchHHHHHHHHHHHhCCCceEEEe
Q 017904 63 VISVGNLTWGGNGKTPMVEFLAHCLADSEISPLILT 98 (364)
Q Consensus 63 VIsVGNltvGGtGKTP~v~~L~~~L~~~g~kvaIls 98 (364)
+.++|- -|+|||+++..++..+...|.++..++
T Consensus 284 ~~i~G~---~GsGKSTLl~~l~g~~~~~G~~vi~~~ 316 (525)
T 1tf7_A 284 ILATGA---TGTGKTLLVSRFVENACANKERAILFA 316 (525)
T ss_dssp EEEEEC---TTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred EEEEeC---CCCCHHHHHHHHHHHHHhCCCCEEEEE
Confidence 344453 499999999999999887788765554
No 434
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=55.32 E-value=6.7 Score=33.81 Aligned_cols=22 Identities=32% Similarity=0.582 Sum_probs=18.6
Q ss_pred CcEEEEcCcccCCCCchHHHHHHHH
Q 017904 61 VPVISVGNLTWGGNGKTPMVEFLAH 85 (364)
Q Consensus 61 vPVIsVGNltvGGtGKTP~v~~L~~ 85 (364)
..|++||. .|+|||+++..++.
T Consensus 27 ~ki~lvG~---~~vGKSsLi~~l~~ 48 (201)
T 2ew1_A 27 FKIVLIGN---AGVGKTCLVRRFTQ 48 (201)
T ss_dssp EEEEEEES---TTSSHHHHHHHHHH
T ss_pred eEEEEECc---CCCCHHHHHHHHHh
Confidence 57899997 69999999988765
No 435
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=55.22 E-value=6.3 Score=32.98 Aligned_cols=21 Identities=24% Similarity=0.468 Sum_probs=17.2
Q ss_pred CcEEEEcCcccCCCCchHHHHHHH
Q 017904 61 VPVISVGNLTWGGNGKTPMVEFLA 84 (364)
Q Consensus 61 vPVIsVGNltvGGtGKTP~v~~L~ 84 (364)
..|++||. .|+|||+++..+.
T Consensus 18 ~ki~v~G~---~~~GKSsl~~~l~ 38 (199)
T 4bas_A 18 LQVVMCGL---DNSGKTTIINQVK 38 (199)
T ss_dssp EEEEEECC---TTSCHHHHHHHHS
T ss_pred cEEEEECC---CCCCHHHHHHHHh
Confidence 35889996 5999999988764
No 436
>1vco_A CTP synthetase; tetramer, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLN; 2.15A {Thermus thermophilus} SCOP: c.23.16.1 c.37.1.10 PDB: 1vcn_A 1vcm_A
Probab=54.91 E-value=12 Score=38.55 Aligned_cols=38 Identities=16% Similarity=0.089 Sum_probs=32.6
Q ss_pred cEEEEcCcccCCCCchHHHHHHHHHHHhCCCceEEEecC
Q 017904 62 PVISVGNLTWGGNGKTPMVEFLAHCLADSEISPLILTRG 100 (364)
Q Consensus 62 PVIsVGNltvGGtGKTP~v~~L~~~L~~~g~kvaIlsRG 100 (364)
.|++-|+. +-|.||+.++..|++.|+++|++|+...-.
T Consensus 14 ~i~v~gg~-~s~~gk~~~~~~~~~~l~~~g~~v~~~k~~ 51 (550)
T 1vco_A 14 YVFITGGV-VSSLGKGILTSSLGALLRARGYRVTAIKID 51 (550)
T ss_dssp EEEEEECS-SSCSCHHHHHHHHHHHHHTTTCCEEEEEEE
T ss_pred EEEEeCCc-ccCcchHHHHHHHHHHHHhCCceeeEeecc
Confidence 56677565 579999999999999999999999999763
No 437
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=54.81 E-value=7.1 Score=33.10 Aligned_cols=22 Identities=18% Similarity=0.436 Sum_probs=18.4
Q ss_pred CCcEEEEcCcccCCCCchHHHHHHH
Q 017904 60 PVPVISVGNLTWGGNGKTPMVEFLA 84 (364)
Q Consensus 60 ~vPVIsVGNltvGGtGKTP~v~~L~ 84 (364)
..-|++||. .|+|||+++..++
T Consensus 20 ~~~i~v~G~---~~~GKSsli~~l~ 41 (213)
T 3cph_A 20 IMKILLIGD---SGVGKSCLLVRFV 41 (213)
T ss_dssp CEEEEEECS---TTSSHHHHHHHHH
T ss_pred ceEEEEECC---CCCCHHHHHHHHH
Confidence 357899997 6999999998776
No 438
>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*
Probab=54.33 E-value=34 Score=31.21 Aligned_cols=78 Identities=9% Similarity=0.057 Sum_probs=45.8
Q ss_pred CCCCchHHHHHHHHHHHhCCCceEEEecCCCCCchHHHHHHHhCCCCEEEeccccchhH-HHhh----hc-CCCCEEEEc
Q 017904 72 GGNGKTPMVEFLAHCLADSEISPLILTRGYAGGDEVRMLERHLLERPAKIGKNCINPKV-GSHL----KS-GKIGAVILD 145 (364)
Q Consensus 72 GGtGKTP~v~~L~~~L~~~g~kvaIlsRGYg~GDE~~lla~~~~~~~v~v~~~~~~~~~-~~~~----~~-~~~dviIlD 145 (364)
||+|-.-+=..+++.|.++|++|.++.|.-...++...+.+..+.+ ..+.+|.-+... ..++ .+ .++|++|--
T Consensus 37 Gasg~~GIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lVnn 115 (296)
T 3k31_A 37 GVANDKSLAWGIAKAVCAQGAEVALTYLSETFKKRVDPLAESLGVK-LTVPCDVSDAESVDNMFKVLAEEWGSLDFVVHA 115 (296)
T ss_dssp CCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHHTCC-EEEECCTTCHHHHHHHHHHHHHHHSCCSEEEEC
T ss_pred eCCCCCCHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcCCe-EEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEEC
Confidence 5554334667899999999999999988732112223334444443 445555433332 1121 12 368999988
Q ss_pred CCCCC
Q 017904 146 DGMQH 150 (364)
Q Consensus 146 DgfQh 150 (364)
-|..+
T Consensus 116 AG~~~ 120 (296)
T 3k31_A 116 VAFSD 120 (296)
T ss_dssp CCCCC
T ss_pred CCcCC
Confidence 88765
No 439
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=54.28 E-value=3.8 Score=33.98 Aligned_cols=22 Identities=23% Similarity=0.380 Sum_probs=9.6
Q ss_pred CCcEEEEcCcccCCCCchHHHHHHH
Q 017904 60 PVPVISVGNLTWGGNGKTPMVEFLA 84 (364)
Q Consensus 60 ~vPVIsVGNltvGGtGKTP~v~~L~ 84 (364)
.+-|++||. .|+|||+++..+.
T Consensus 8 ~~ki~v~G~---~~~GKssl~~~l~ 29 (183)
T 2fu5_C 8 LFKLLLIGD---SGVGKTCVLFRFS 29 (183)
T ss_dssp EEEEEEECC---CCC----------
T ss_pred ceEEEEECC---CCCCHHHHHHHHH
Confidence 457899996 5999999987765
No 440
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=54.15 E-value=6.8 Score=33.35 Aligned_cols=22 Identities=18% Similarity=0.442 Sum_probs=18.5
Q ss_pred CCcEEEEcCcccCCCCchHHHHHHH
Q 017904 60 PVPVISVGNLTWGGNGKTPMVEFLA 84 (364)
Q Consensus 60 ~vPVIsVGNltvGGtGKTP~v~~L~ 84 (364)
.+-|+++|. .|+|||+++..+.
T Consensus 25 ~~ki~v~G~---~~~GKSsLi~~l~ 46 (200)
T 2o52_A 25 LFKFLVIGS---AGTGKSCLLHQFI 46 (200)
T ss_dssp EEEEEEEES---TTSSHHHHHHHHH
T ss_pred ceEEEEECc---CCCCHHHHHHHHH
Confidence 467899996 5999999998774
No 441
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=54.05 E-value=6.5 Score=35.74 Aligned_cols=20 Identities=30% Similarity=0.479 Sum_probs=16.7
Q ss_pred cEEEEcCcccCCCCchHHHHHHH
Q 017904 62 PVISVGNLTWGGNGKTPMVEFLA 84 (364)
Q Consensus 62 PVIsVGNltvGGtGKTP~v~~L~ 84 (364)
-|+.||| .|+|||+++..|.
T Consensus 3 kI~lvG~---~n~GKSTL~n~L~ 22 (256)
T 3iby_A 3 HALLIGN---PNCGKTTLFNALT 22 (256)
T ss_dssp EEEEEES---TTSSHHHHHHHHH
T ss_pred EEEEECC---CCCCHHHHHHHHH
Confidence 3778998 5999999998874
No 442
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=53.86 E-value=7.7 Score=36.83 Aligned_cols=24 Identities=25% Similarity=0.482 Sum_probs=19.2
Q ss_pred CCCc-EEEEcCcccCCCCchHHHHHHHH
Q 017904 59 LPVP-VISVGNLTWGGNGKTPMVEFLAH 85 (364)
Q Consensus 59 ~~vP-VIsVGNltvGGtGKTP~v~~L~~ 85 (364)
+.+| |++||+- |+|||+++..|+.
T Consensus 32 ~~lp~I~vvG~~---~sGKSSLln~l~g 56 (360)
T 3t34_A 32 DSLPAIAVVGGQ---SSGKSSVLESIVG 56 (360)
T ss_dssp CCCCEEEEECBT---TSSHHHHHHHHHT
T ss_pred ccCCEEEEECCC---CCcHHHHHHHHhC
Confidence 3455 6688874 9999999999986
No 443
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=53.74 E-value=5 Score=33.12 Aligned_cols=22 Identities=27% Similarity=0.469 Sum_probs=18.0
Q ss_pred CCcEEEEcCcccCCCCchHHHHHHH
Q 017904 60 PVPVISVGNLTWGGNGKTPMVEFLA 84 (364)
Q Consensus 60 ~vPVIsVGNltvGGtGKTP~v~~L~ 84 (364)
+.-|++||. .|+|||+++..+.
T Consensus 18 ~~~i~v~G~---~~~GKssli~~l~ 39 (183)
T 1moz_A 18 ELRILILGL---DGAGKTTILYRLQ 39 (183)
T ss_dssp CEEEEEEEE---TTSSHHHHHHHTC
T ss_pred ccEEEEECC---CCCCHHHHHHHHh
Confidence 467999997 5999999987664
No 444
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=53.73 E-value=6.8 Score=36.09 Aligned_cols=21 Identities=24% Similarity=0.553 Sum_probs=17.8
Q ss_pred CcEEEEcCcccCCCCchHHHHHHH
Q 017904 61 VPVISVGNLTWGGNGKTPMVEFLA 84 (364)
Q Consensus 61 vPVIsVGNltvGGtGKTP~v~~L~ 84 (364)
..|+.||| .|+|||+++..|.
T Consensus 4 ~kI~lvG~---~nvGKSTL~n~L~ 24 (272)
T 3b1v_A 4 TEIALIGN---PNSGKTSLFNLIT 24 (272)
T ss_dssp EEEEEECC---TTSSHHHHHHHHH
T ss_pred eEEEEECC---CCCCHHHHHHHHH
Confidence 35889998 5999999999875
No 445
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=53.67 E-value=7.5 Score=35.66 Aligned_cols=24 Identities=17% Similarity=0.302 Sum_probs=18.7
Q ss_pred cEEEEcCcccCCCCchHHHHHHHHHHH
Q 017904 62 PVISVGNLTWGGNGKTPMVEFLAHCLA 88 (364)
Q Consensus 62 PVIsVGNltvGGtGKTP~v~~L~~~L~ 88 (364)
-|++.| ..|+|||+++..+++.+.
T Consensus 32 ~v~i~G---~~G~GKT~L~~~~~~~~~ 55 (357)
T 2fna_A 32 ITLVLG---LRRTGKSSIIKIGINELN 55 (357)
T ss_dssp EEEEEE---STTSSHHHHHHHHHHHHT
T ss_pred cEEEEC---CCCCCHHHHHHHHHHhcC
Confidence 344555 379999999999998874
No 446
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=53.67 E-value=7 Score=33.46 Aligned_cols=22 Identities=23% Similarity=0.483 Sum_probs=18.1
Q ss_pred CCcEEEEcCcccCCCCchHHHHHHH
Q 017904 60 PVPVISVGNLTWGGNGKTPMVEFLA 84 (364)
Q Consensus 60 ~vPVIsVGNltvGGtGKTP~v~~L~ 84 (364)
.+-|++||. .|+|||+++..+.
T Consensus 25 ~~ki~vvG~---~~~GKSsLi~~l~ 46 (217)
T 2f7s_A 25 LIKLLALGD---SGVGKTTFLYRYT 46 (217)
T ss_dssp EEEEEEESC---TTSSHHHHHHHHH
T ss_pred eEEEEEECc---CCCCHHHHHHHHh
Confidence 357899997 5999999988765
No 447
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=53.59 E-value=10 Score=40.57 Aligned_cols=35 Identities=29% Similarity=0.321 Sum_probs=27.1
Q ss_pred CcEEEEcCcccCCCCchHHHHHHHHHHHh-------CCCceEEEe
Q 017904 61 VPVISVGNLTWGGNGKTPMVEFLAHCLAD-------SEISPLILT 98 (364)
Q Consensus 61 vPVIsVGNltvGGtGKTP~v~~L~~~L~~-------~g~kvaIls 98 (364)
-+++.+|. -|||||+++..+++.+.. +|.++..+.
T Consensus 192 ~~vlL~G~---pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~ 233 (854)
T 1qvr_A 192 NNPVLIGE---PGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQ 233 (854)
T ss_dssp CCCEEEEC---TTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEEC
T ss_pred CceEEEcC---CCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEee
Confidence 35788996 699999999999999965 355655553
No 448
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=53.39 E-value=6.1 Score=32.79 Aligned_cols=22 Identities=18% Similarity=0.388 Sum_probs=18.4
Q ss_pred CCcEEEEcCcccCCCCchHHHHHHH
Q 017904 60 PVPVISVGNLTWGGNGKTPMVEFLA 84 (364)
Q Consensus 60 ~vPVIsVGNltvGGtGKTP~v~~L~ 84 (364)
..-|+++|. .|+|||+++..+.
T Consensus 18 ~~~i~v~G~---~~~GKssl~~~l~ 39 (186)
T 1ksh_A 18 ELRLLMLGL---DNAGKTTILKKFN 39 (186)
T ss_dssp CEEEEEECS---TTSSHHHHHHHHT
T ss_pred eeEEEEECC---CCCCHHHHHHHHh
Confidence 467899997 5999999988775
No 449
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=53.34 E-value=7.2 Score=33.37 Aligned_cols=22 Identities=27% Similarity=0.469 Sum_probs=18.5
Q ss_pred CCcEEEEcCcccCCCCchHHHHHHH
Q 017904 60 PVPVISVGNLTWGGNGKTPMVEFLA 84 (364)
Q Consensus 60 ~vPVIsVGNltvGGtGKTP~v~~L~ 84 (364)
.+.|++||. .|+|||+++..+.
T Consensus 30 ~~ki~vvG~---~~~GKSsLi~~l~ 51 (204)
T 4gzl_A 30 AIKCVVVGD---GAVGKTCLLISYT 51 (204)
T ss_dssp CEEEEEEES---TTSSHHHHHHHHH
T ss_pred eEEEEEECc---CCCCHHHHHHHHH
Confidence 468999997 5999999997665
No 450
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=53.27 E-value=7.9 Score=40.06 Aligned_cols=37 Identities=19% Similarity=0.194 Sum_probs=26.1
Q ss_pred CCcEEEEcCcccCCCCchHHHHHHHHHHH-hCC---CceEEEec
Q 017904 60 PVPVISVGNLTWGGNGKTPMVEFLAHCLA-DSE---ISPLILTR 99 (364)
Q Consensus 60 ~vPVIsVGNltvGGtGKTP~v~~L~~~L~-~~g---~kvaIlsR 99 (364)
.-|++++|. -|||||.++.+-+.+|. +.| .++.+|+-
T Consensus 15 ~~~~lV~Ag---aGSGKT~~l~~ri~~ll~~~~~~~~~IL~lTf 55 (673)
T 1uaa_A 15 TGPCLVLAG---AGSGKTRVITNKIAHLIRGCGYQARHIAAVTF 55 (673)
T ss_dssp SSEEEECCC---TTSCHHHHHHHHHHHHHHHHCCCGGGEEEEES
T ss_pred CCCEEEEeC---CCCChHHHHHHHHHHHHHhcCCCHHHeEEEec
Confidence 458888885 59999998876655554 324 57788853
No 451
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=53.24 E-value=5.5 Score=33.64 Aligned_cols=21 Identities=38% Similarity=0.656 Sum_probs=17.5
Q ss_pred CcEEEEcCcccCCCCchHHHHHHH
Q 017904 61 VPVISVGNLTWGGNGKTPMVEFLA 84 (364)
Q Consensus 61 vPVIsVGNltvGGtGKTP~v~~L~ 84 (364)
+.|++||. .|+|||+++..+.
T Consensus 27 ~ki~vvG~---~~~GKSsLi~~l~ 47 (192)
T 2il1_A 27 LQVIIIGS---RGVGKTSLMERFT 47 (192)
T ss_dssp EEEEEECS---TTSSHHHHHHHHC
T ss_pred eEEEEECC---CCCCHHHHHHHHh
Confidence 45899996 5999999998874
No 452
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=53.19 E-value=8.7 Score=34.10 Aligned_cols=38 Identities=16% Similarity=0.114 Sum_probs=32.4
Q ss_pred cEEEEcCcccCCCCchHH-HHHHHHHHHhCCCceEEEecCC
Q 017904 62 PVISVGNLTWGGNGKTPM-VEFLAHCLADSEISPLILTRGY 101 (364)
Q Consensus 62 PVIsVGNltvGGtGKTP~-v~~L~~~L~~~g~kvaIlsRGY 101 (364)
|+.+|-.. |||+||.. +..|+..-.+.|++|-||+-+-
T Consensus 52 ~~~iv~g~--ggs~~~~~~~a~L~~~a~~~Gr~V~vLAp~~ 90 (189)
T 2l8b_A 52 SLAIVSGQ--GGAAGQRERVAELVMMAREQGREVQIIAADR 90 (189)
T ss_dssp CEECCBCS--SCSHHHHHHHHHHHHHHHHTTCCEEEECSTT
T ss_pred ceEEEecc--cchHHHHHHHHHHHHHHHhcCeEEEEEcCch
Confidence 67777776 99999986 7788888999999999998774
No 453
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=53.10 E-value=7 Score=35.53 Aligned_cols=21 Identities=33% Similarity=0.365 Sum_probs=17.6
Q ss_pred CcEEEEcCcccCCCCchHHHHHHH
Q 017904 61 VPVISVGNLTWGGNGKTPMVEFLA 84 (364)
Q Consensus 61 vPVIsVGNltvGGtGKTP~v~~L~ 84 (364)
.-|+.|||- |+|||+++..|.
T Consensus 6 ~kI~lvG~~---nvGKTsL~n~l~ 26 (258)
T 3a1s_A 6 VKVALAGCP---NVGKTSLFNALT 26 (258)
T ss_dssp EEEEEECCT---TSSHHHHHHHHH
T ss_pred eEEEEECCC---CCCHHHHHHHHH
Confidence 358899984 999999998875
No 454
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=52.75 E-value=29 Score=36.30 Aligned_cols=35 Identities=29% Similarity=0.352 Sum_probs=27.2
Q ss_pred hcCCCccCCCCCcEEEEcCcccCCCCchHHHHHHHHHH
Q 017904 50 RFGFFSKHRLPVPVISVGNLTWGGNGKTPMVEFLAHCL 87 (364)
Q Consensus 50 ~~gi~~~~~~~vPVIsVGNltvGGtGKTP~v~~L~~~L 87 (364)
..|+-.+.+...+++..|. -|||||.++..+++.+
T Consensus 478 ~~g~~~~~~p~~~~ll~G~---~GtGKT~la~~la~~l 512 (758)
T 1r6b_X 478 RAGLGHEHKPVGSFLFAGP---TGVGKTEVTVQLSKAL 512 (758)
T ss_dssp HTTCSCTTSCSEEEEEECS---TTSSHHHHHHHHHHHH
T ss_pred hcccCCCCCCceEEEEECC---CCCcHHHHHHHHHHHh
Confidence 3455445554457899997 5999999999999998
No 455
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=52.74 E-value=7.9 Score=36.86 Aligned_cols=26 Identities=15% Similarity=0.037 Sum_probs=21.0
Q ss_pred cEEEEcCcccCCCCchHHHHHHHHHHHhC
Q 017904 62 PVISVGNLTWGGNGKTPMVEFLAHCLADS 90 (364)
Q Consensus 62 PVIsVGNltvGGtGKTP~v~~L~~~L~~~ 90 (364)
-+.+.|- -|||||.++.++++.|.+.
T Consensus 47 ~lli~Gp---PGTGKT~~v~~v~~~L~~~ 72 (318)
T 3te6_A 47 LFYITNA---DDSTKFQLVNDVMDELITS 72 (318)
T ss_dssp EEEEECC---CSHHHHHHHHHHHHHHHHT
T ss_pred eEEEECC---CCCCHHHHHHHHHHHHHHH
Confidence 3556663 6999999999999999753
No 456
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=52.66 E-value=15 Score=34.44 Aligned_cols=32 Identities=16% Similarity=0.113 Sum_probs=25.1
Q ss_pred cCCCCCcEEEEcCcccCCCCchHHHHHHHHHHHhC
Q 017904 56 KHRLPVPVISVGNLTWGGNGKTPMVEFLAHCLADS 90 (364)
Q Consensus 56 ~~~~~vPVIsVGNltvGGtGKTP~v~~L~~~L~~~ 90 (364)
+.+++-.++..|. -|||||+++.++++.+...
T Consensus 20 ~~~~~~a~L~~G~---~G~GKt~~a~~la~~l~~~ 51 (334)
T 1a5t_A 20 AGRGHHALLIQAL---PGMGDDALIYALSRYLLCQ 51 (334)
T ss_dssp TTCCCSEEEEECC---TTSCHHHHHHHHHHHHTCS
T ss_pred cCCcceeEEEECC---CCchHHHHHHHHHHHHhCC
Confidence 3455556788886 5999999999999998643
No 457
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=52.48 E-value=23 Score=36.09 Aligned_cols=48 Identities=17% Similarity=0.266 Sum_probs=31.2
Q ss_pred EEEcCcccCCCCchHH-HHHHHHHHHh-------CCCceEEEecCCCCCchHHHHHHHhC
Q 017904 64 ISVGNLTWGGNGKTPM-VEFLAHCLAD-------SEISPLILTRGYAGGDEVRMLERHLL 115 (364)
Q Consensus 64 IsVGNltvGGtGKTP~-v~~L~~~L~~-------~g~kvaIlsRGYg~GDE~~lla~~~~ 115 (364)
-++|. -|||||.+ +..++++... .+..+.++.=|- ++.|-..+.+.+.
T Consensus 166 ~I~g~---~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGe-R~~Ev~~~~~~~~ 221 (510)
T 2ck3_A 166 LIIGD---RQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQ-KRSTVAQLVKRLT 221 (510)
T ss_dssp EEEES---TTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESC-CHHHHHHHHHHHH
T ss_pred EEecC---CCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCC-CcHHHHHHHHHHH
Confidence 45565 49999999 6688888763 444455555564 3677666655554
No 458
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=52.37 E-value=8.6 Score=37.25 Aligned_cols=31 Identities=26% Similarity=0.305 Sum_probs=25.2
Q ss_pred CCCcEEEEcCcccCCCCchHHHHHHHHHHHhCCC
Q 017904 59 LPVPVISVGNLTWGGNGKTPMVEFLAHCLADSEI 92 (364)
Q Consensus 59 ~~vPVIsVGNltvGGtGKTP~v~~L~~~L~~~g~ 92 (364)
..+-|+.+|.. |+|||+++..|...+.++|.
T Consensus 10 ~~~~I~iiG~~---~~GKSTLi~~L~~~~~~~g~ 40 (405)
T 2c78_A 10 PHVNVGTIGHV---DHGKTTLTAALTYVAAAENP 40 (405)
T ss_dssp CEEEEEEECST---TSSHHHHHHHHHHHHHHSCT
T ss_pred CeEEEEEEcCC---CCCHHHHHHHHHhhhhhcCc
Confidence 34568899985 99999999999988776653
No 459
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=51.77 E-value=9.3 Score=36.62 Aligned_cols=33 Identities=21% Similarity=0.255 Sum_probs=25.6
Q ss_pred CCcEEEEcCcccCCCCchHHHHHHHHHHHhCCCceEEEe
Q 017904 60 PVPVISVGNLTWGGNGKTPMVEFLAHCLADSEISPLILT 98 (364)
Q Consensus 60 ~vPVIsVGNltvGGtGKTP~v~~L~~~L~~~g~kvaIls 98 (364)
+.+|+..|. -|||||.++..+++.+ |..+..++
T Consensus 148 ~~~vLL~Gp---pGtGKT~la~aia~~~---~~~~~~v~ 180 (389)
T 3vfd_A 148 ARGLLLFGP---PGNGKTMLAKAVAAES---NATFFNIS 180 (389)
T ss_dssp CSEEEEESS---TTSCHHHHHHHHHHHT---TCEEEEEC
T ss_pred CceEEEECC---CCCCHHHHHHHHHHhh---cCcEEEee
Confidence 568999997 5999999999998875 44544443
No 460
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=51.75 E-value=12 Score=39.25 Aligned_cols=28 Identities=32% Similarity=0.383 Sum_probs=24.1
Q ss_pred CCcEEEEcCcccCCCCchHHHHHHHHHHHhC
Q 017904 60 PVPVISVGNLTWGGNGKTPMVEFLAHCLADS 90 (364)
Q Consensus 60 ~vPVIsVGNltvGGtGKTP~v~~L~~~L~~~ 90 (364)
+.+++.+|. -|||||.++..+++.+...
T Consensus 207 ~~~vlL~G~---~GtGKT~la~~la~~l~~~ 234 (758)
T 1r6b_X 207 KNNPLLVGE---SGVGKTAIAEGLAWRIVQG 234 (758)
T ss_dssp SCEEEEECC---TTSSHHHHHHHHHHHHHHT
T ss_pred CCCeEEEcC---CCCCHHHHHHHHHHHHHhC
Confidence 457899997 5999999999999998664
No 461
>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}
Probab=51.67 E-value=1e+02 Score=27.70 Aligned_cols=39 Identities=13% Similarity=0.038 Sum_probs=27.3
Q ss_pred cEEEEcCcccCCCCchHHHHHHHHHHHhCCCceEEEecCCCCCch
Q 017904 62 PVISVGNLTWGGNGKTPMVEFLAHCLADSEISPLILTRGYAGGDE 106 (364)
Q Consensus 62 PVIsVGNltvGGtGKTP~v~~L~~~L~~~g~kvaIlsRGYg~GDE 106 (364)
.++.|- ||+| -+=..+++.|.++|++|.++.|.-...++
T Consensus 34 k~~lVT----Gas~--GIG~aia~~la~~G~~V~~~~r~~~~~~~ 72 (275)
T 4imr_A 34 RTALVT----GSSR--GIGAAIAEGLAGAGAHVILHGVKPGSTAA 72 (275)
T ss_dssp CEEEET----TCSS--HHHHHHHHHHHHTTCEEEEEESSTTTTHH
T ss_pred CEEEEE----CCCC--HHHHHHHHHHHHCCCEEEEEcCCHHHHHH
Confidence 455554 4553 35567899999999999999996544333
No 462
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=51.62 E-value=29 Score=31.62 Aligned_cols=22 Identities=32% Similarity=0.383 Sum_probs=19.7
Q ss_pred EEEEcCcccCCCCchHHHHHHHHHH
Q 017904 63 VISVGNLTWGGNGKTPMVEFLAHCL 87 (364)
Q Consensus 63 VIsVGNltvGGtGKTP~v~~L~~~L 87 (364)
|..+|- -|||||+++..++..+
T Consensus 47 vlL~Gp---~GtGKTtLakala~~~ 68 (274)
T 2x8a_A 47 VLLAGP---PGCGKTLLAKAVANES 68 (274)
T ss_dssp EEEESS---TTSCHHHHHHHHHHHT
T ss_pred EEEECC---CCCcHHHHHHHHHHHc
Confidence 888885 6999999999999876
No 463
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=51.58 E-value=9.5 Score=35.48 Aligned_cols=36 Identities=17% Similarity=0.097 Sum_probs=25.0
Q ss_pred EEEEcCcccCCCCchHHHHHHHHHHH------------hCC----CceEEEecCC
Q 017904 63 VISVGNLTWGGNGKTPMVEFLAHCLA------------DSE----ISPLILTRGY 101 (364)
Q Consensus 63 VIsVGNltvGGtGKTP~v~~L~~~L~------------~~g----~kvaIlsRGY 101 (364)
+++.|. -|+|||+++..++.... ++| .+|..++-.-
T Consensus 101 ~~i~G~---~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~ 152 (322)
T 2i1q_A 101 TEFAGV---FGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEG 152 (322)
T ss_dssp EEEEES---TTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSS
T ss_pred EEEECC---CCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCC
Confidence 455564 59999999999997632 234 5777777553
No 464
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=51.47 E-value=12 Score=36.53 Aligned_cols=52 Identities=19% Similarity=0.133 Sum_probs=34.2
Q ss_pred cEEEEcCcccCCCCchHHH-HHHHHHHHhCCCceEEEecCCCCCchHHHHHHHhCCCCE
Q 017904 62 PVISVGNLTWGGNGKTPMV-EFLAHCLADSEISPLILTRGYAGGDEVRMLERHLLERPA 119 (364)
Q Consensus 62 PVIsVGNltvGGtGKTP~v-~~L~~~L~~~g~kvaIlsRGYg~GDE~~lla~~~~~~~v 119 (364)
.++++|- -|||||-.. ..+++.+.+.|.++.|++.- . .=..++++.+.+..+
T Consensus 4 ~~lv~a~---TGsGKT~~~l~~~l~~~~~~g~~~lvl~Pt-~--~La~Q~~~~~~~~~v 56 (431)
T 2v6i_A 4 LTVLDLH---PGAGKTRRVLPQLVREAVKKRLRTVILAPT-R--VVASEMYEALRGEPI 56 (431)
T ss_dssp EEEEECC---TTSCTTTTHHHHHHHHHHHTTCCEEEEESS-H--HHHHHHHHHTTTSCE
T ss_pred EEEEEcC---CCCCHHHHHHHHHHHHHHhCCCCEEEECcH-H--HHHHHHHHHhCCCeE
Confidence 3566664 499999974 76776666788899999742 1 113455566655544
No 465
>1kjn_A MTH0777; hypotethical protein, structural genomics, PSI, protein structure initiative; 2.20A {Methanothermobacterthermautotrophicus} SCOP: c.115.1.1
Probab=51.32 E-value=12 Score=32.15 Aligned_cols=26 Identities=12% Similarity=0.203 Sum_probs=23.2
Q ss_pred CchHHHHHHHHHHHhCCCceEEEecC
Q 017904 75 GKTPMVEFLAHCLADSEISPLILTRG 100 (364)
Q Consensus 75 GKTP~v~~L~~~L~~~g~kvaIlsRG 100 (364)
=.||+++|++..|+++|++|.|-++-
T Consensus 20 vq~p~~lYl~~~Lk~~G~~v~VA~np 45 (157)
T 1kjn_A 20 VQIPLAIYTSHKLKKKGFRVTVTANP 45 (157)
T ss_dssp THHHHHHHHHHHHHHTTCEEEEEECH
T ss_pred chhhHHHHHHHHHHhcCCeeEEecCH
Confidence 47999999999999999999998653
No 466
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=51.30 E-value=8 Score=45.00 Aligned_cols=69 Identities=14% Similarity=0.163 Sum_probs=44.5
Q ss_pred CCCCchHHHHHHHHHHHhCCCceEEEecCCCCCchHHHHHHHhCCCC---EEEeccccchh-H----HHhhhcCCCCEEE
Q 017904 72 GGNGKTPMVEFLAHCLADSEISPLILTRGYAGGDEVRMLERHLLERP---AKIGKNCINPK-V----GSHLKSGKIGAVI 143 (364)
Q Consensus 72 GGtGKTP~v~~L~~~L~~~g~kvaIlsRGYg~GDE~~lla~~~~~~~---v~v~~~~~~~~-~----~~~~~~~~~dviI 143 (364)
-|+|||+|+..++.....+|.+++.+|=.-.. ++- .++.+ |+. +.+... .... . ..+..+.++++||
T Consensus 392 pGsGKTtLaLq~a~~~~~~G~~vlyis~E~s~-~~~--~a~~l-Gvd~~~L~i~~~-~~~e~~l~~l~~lv~~~~~~lVV 466 (1706)
T 3cmw_A 392 ESSGKTTLTLQVIAAAQREGKTCAFIDAEHAL-DPI--YARKL-GVDIDNLLCSQP-DTGEQALEICDALARSGAVDVIV 466 (1706)
T ss_dssp TTSSHHHHHHHHHHHHHHTTCCEEEECTTSCC-CHH--HHHHT-TCCGGGCEEECC-SSHHHHHHHHHHHHHHTCCSEEE
T ss_pred CCCCHHHHHHHHHHHHHHhCCCeEEEEccCch-HHH--HHHHc-CCCHHHeEEcCC-CCHHHHHHHHHHHHHhcCCCEEE
Confidence 49999999999999998899999999887642 332 35555 332 111110 0111 1 1233466899999
Q ss_pred Ec
Q 017904 144 LD 145 (364)
Q Consensus 144 lD 145 (364)
+|
T Consensus 467 ID 468 (1706)
T 3cmw_A 467 VD 468 (1706)
T ss_dssp ES
T ss_pred EC
Confidence 99
No 467
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=51.29 E-value=9.7 Score=33.48 Aligned_cols=24 Identities=25% Similarity=0.497 Sum_probs=20.4
Q ss_pred CcEEEEcCcccCCCCchHHHHHHHHHH
Q 017904 61 VPVISVGNLTWGGNGKTPMVEFLAHCL 87 (364)
Q Consensus 61 vPVIsVGNltvGGtGKTP~v~~L~~~L 87 (364)
-.+..||- -|+||||++..|+..+
T Consensus 24 ~~~~lvGp---sGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 24 YPLVICGP---SGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCEEEECS---TTSSHHHHHHHHHHHS
T ss_pred CEEEEECC---CCCCHHHHHHHHHhhC
Confidence 46778884 5999999999999977
No 468
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=51.15 E-value=6.4 Score=32.96 Aligned_cols=22 Identities=32% Similarity=0.508 Sum_probs=18.1
Q ss_pred CcEEEEcCcccCCCCchHHHHHHHH
Q 017904 61 VPVISVGNLTWGGNGKTPMVEFLAH 85 (364)
Q Consensus 61 vPVIsVGNltvGGtGKTP~v~~L~~ 85 (364)
.-|++||+ .|+|||+++..+..
T Consensus 22 ~ki~v~G~---~~~GKSsli~~l~~ 43 (190)
T 2h57_A 22 VHVLCLGL---DNSGKTTIINKLKP 43 (190)
T ss_dssp EEEEEEEC---TTSSHHHHHHHTSC
T ss_pred cEEEEECC---CCCCHHHHHHHHhc
Confidence 56899997 59999999887753
No 469
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=51.12 E-value=8.6 Score=33.31 Aligned_cols=23 Identities=17% Similarity=0.482 Sum_probs=18.6
Q ss_pred CCcEEEEcCcccCCCCchHHHHHHHH
Q 017904 60 PVPVISVGNLTWGGNGKTPMVEFLAH 85 (364)
Q Consensus 60 ~vPVIsVGNltvGGtGKTP~v~~L~~ 85 (364)
.+.|++||. .|+|||+++..++.
T Consensus 13 ~~ki~v~G~---~~vGKSsli~~l~~ 35 (223)
T 3cpj_B 13 LFKIVLIGD---SGVGKSNLLSRFTK 35 (223)
T ss_dssp EEEEEEESC---TTSSHHHHHHHHHH
T ss_pred eeEEEEECc---CCCCHHHHHHHHhc
Confidence 357899996 59999999887753
No 470
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=50.96 E-value=8.8 Score=37.82 Aligned_cols=26 Identities=19% Similarity=0.180 Sum_probs=22.6
Q ss_pred CCCcEEEEcCcccCCCCchHHHHHHHHHH
Q 017904 59 LPVPVISVGNLTWGGNGKTPMVEFLAHCL 87 (364)
Q Consensus 59 ~~vPVIsVGNltvGGtGKTP~v~~L~~~L 87 (364)
.+.+|+..|. -|||||.++.++++.+
T Consensus 166 ~~~~vLL~Gp---pGtGKT~lA~aia~~~ 191 (444)
T 2zan_A 166 PWRGILLFGP---PGTGKSYLAKAVATEA 191 (444)
T ss_dssp CCSEEEEECS---TTSSHHHHHHHHHHHC
T ss_pred CCceEEEECC---CCCCHHHHHHHHHHHc
Confidence 4467999996 5999999999999987
No 471
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=50.93 E-value=9 Score=34.36 Aligned_cols=25 Identities=24% Similarity=0.190 Sum_probs=21.9
Q ss_pred CcEEEEcCcccCCCCchHHHHHHHHHH
Q 017904 61 VPVISVGNLTWGGNGKTPMVEFLAHCL 87 (364)
Q Consensus 61 vPVIsVGNltvGGtGKTP~v~~L~~~L 87 (364)
.+||.|+.- =|||||++...|++.|
T Consensus 14 ~~iI~i~g~--~gsGk~~i~~~la~~l 38 (223)
T 3hdt_A 14 NLIITIERE--YGSGGRIVGKKLAEEL 38 (223)
T ss_dssp CEEEEEEEC--TTSCHHHHHHHHHHHH
T ss_pred CeEEEEeCC--CCCCHHHHHHHHHHHc
Confidence 368888876 4999999999999998
No 472
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=50.82 E-value=11 Score=37.32 Aligned_cols=26 Identities=31% Similarity=0.418 Sum_probs=22.7
Q ss_pred CcEEEEcCcccCCCCchHHHHHHHHHHHh
Q 017904 61 VPVISVGNLTWGGNGKTPMVEFLAHCLAD 89 (364)
Q Consensus 61 vPVIsVGNltvGGtGKTP~v~~L~~~L~~ 89 (364)
-+++.+|. -|||||.++..+++.+..
T Consensus 202 ~~~LL~G~---pG~GKT~la~~la~~l~~ 227 (468)
T 3pxg_A 202 NNPVLIGE---PGVGKTAIAEGLAQQIIN 227 (468)
T ss_dssp CEEEEESC---TTTTTHHHHHHHHHHHHS
T ss_pred CCeEEECC---CCCCHHHHHHHHHHHHHh
Confidence 47889996 699999999999999865
No 473
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=50.73 E-value=8.2 Score=35.03 Aligned_cols=28 Identities=18% Similarity=0.208 Sum_probs=20.6
Q ss_pred cCCCCchHHHHHHHHHHHhCCC-ceEEEe
Q 017904 71 WGGNGKTPMVEFLAHCLADSEI-SPLILT 98 (364)
Q Consensus 71 vGGtGKTP~v~~L~~~L~~~g~-kvaIls 98 (364)
.-|+|||-....++..+.++|. ++.|+.
T Consensus 136 ~tGsGKT~~~~~~~~~~~~~~~~~~lil~ 164 (282)
T 1rif_A 136 PTSAGRSLIQALLARYYLENYEGKILIIV 164 (282)
T ss_dssp CTTSCHHHHHHHHHHHHHHHCSSEEEEEC
T ss_pred CCCCCcHHHHHHHHHHHHHcCCCeEEEEE
Confidence 4699999999888877654444 666664
No 474
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=50.20 E-value=6 Score=38.12 Aligned_cols=31 Identities=35% Similarity=0.429 Sum_probs=22.2
Q ss_pred EEEEcCcccCCCCchHHHHHHHHHHHhCCCceEEEec
Q 017904 63 VISVGNLTWGGNGKTPMVEFLAHCLADSEISPLILTR 99 (364)
Q Consensus 63 VIsVGNltvGGtGKTP~v~~L~~~L~~~g~kvaIlsR 99 (364)
++..|. .|||||+++..++.. +|.++..++=
T Consensus 126 iLI~Gp---PGsGKTtLAlqlA~~---~G~~VlyIs~ 156 (331)
T 2vhj_A 126 VIVTGK---GNSGKTPLVHALGEA---LGGKDKYATV 156 (331)
T ss_dssp EEEECS---CSSSHHHHHHHHHHH---HHTTSCCEEE
T ss_pred EEEEcC---CCCCHHHHHHHHHHh---CCCCEEEEEe
Confidence 345553 599999999999886 4666665543
No 475
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=49.95 E-value=13 Score=44.15 Aligned_cols=80 Identities=15% Similarity=0.147 Sum_probs=50.8
Q ss_pred cEEEEcCcccCCCCchHHHHHHHHHHHhCCCceEEEecCCCCCchHHHHHHHhCCCC---EEEeccccch--hH----HH
Q 017904 62 PVISVGNLTWGGNGKTPMVEFLAHCLADSEISPLILTRGYAGGDEVRMLERHLLERP---AKIGKNCINP--KV----GS 132 (364)
Q Consensus 62 PVIsVGNltvGGtGKTP~v~~L~~~L~~~g~kvaIlsRGYg~GDE~~lla~~~~~~~---v~v~~~~~~~--~~----~~ 132 (364)
-|+..|. -|||||.++.+++....++|.+++.++=.-.- + +.. ++.+ |+. ..|.. .++ .+ ..
T Consensus 1429 ~vll~Gp---pGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~-~-~l~-a~~~-G~dl~~l~v~~--~~~~E~~l~~~~~ 1499 (2050)
T 3cmu_A 1429 IVEIYGP---ESSGKTTLTLQVIAAAQREGKTCAFIDAEHAL-D-PIY-ARKL-GVDIDNLLCSQ--PDTGEQALEICDA 1499 (2050)
T ss_dssp EEEEECC---TTSSHHHHHHHHHHHHHTTTCCEEEECTTSCC-C-HHH-HHHT-TCCTTTCEEEC--CSSHHHHHHHHHH
T ss_pred EEEEECC---CCCCHHHHHHHHHHHHHHcCCcEEEEEccccc-C-HHH-HHHc-CCCchhceeec--CChHHHHHHHHHH
Confidence 3667775 59999999999999999999999999754221 1 322 5555 321 12221 111 11 22
Q ss_pred hhhcCCCCEEEEc--CCCCC
Q 017904 133 HLKSGKIGAVILD--DGMQH 150 (364)
Q Consensus 133 ~~~~~~~dviIlD--DgfQh 150 (364)
++++..+|+||+| ||+..
T Consensus 1500 lvr~~~~~lVVIDsi~al~p 1519 (2050)
T 3cmu_A 1500 LARSGAVDVIVVDSVAALTP 1519 (2050)
T ss_dssp HHHHTCCSEEEESCGGGCCC
T ss_pred HHhcCCCCEEEEcChhHhcc
Confidence 3456789999999 45544
No 476
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=49.81 E-value=14 Score=38.75 Aligned_cols=37 Identities=22% Similarity=0.296 Sum_probs=26.3
Q ss_pred CCcEEEEcCcccCCCCchHHHHHHHHHHHh-CC---CceEEEec
Q 017904 60 PVPVISVGNLTWGGNGKTPMVEFLAHCLAD-SE---ISPLILTR 99 (364)
Q Consensus 60 ~vPVIsVGNltvGGtGKTP~v~~L~~~L~~-~g---~kvaIlsR 99 (364)
.-|++++|. -|||||.++.+-+.+|.+ .| .++.+|+-
T Consensus 24 ~g~~lV~Ag---AGSGKT~vL~~ri~~ll~~~~~~p~~IL~vTF 64 (724)
T 1pjr_A 24 EGPLLIMAG---AGSGKTRVLTHRIAYLMAEKHVAPWNILAITF 64 (724)
T ss_dssp SSCEEEEEC---TTSCHHHHHHHHHHHHHHTTCCCGGGEEEEES
T ss_pred CCCEEEEEc---CCCCHHHHHHHHHHHHHHhcCCCHHHeEEEec
Confidence 458888886 599999987765555544 45 46777764
No 477
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=49.75 E-value=13 Score=43.20 Aligned_cols=69 Identities=13% Similarity=0.122 Sum_probs=44.0
Q ss_pred CCCCchHHHHHHHHHHHhCCCceEEEecCCCCCchHHHHHHHhCCCC---EEEeccccchh-H----HHhhhcCCCCEEE
Q 017904 72 GGNGKTPMVEFLAHCLADSEISPLILTRGYAGGDEVRMLERHLLERP---AKIGKNCINPK-V----GSHLKSGKIGAVI 143 (364)
Q Consensus 72 GGtGKTP~v~~L~~~L~~~g~kvaIlsRGYg~GDE~~lla~~~~~~~---v~v~~~~~~~~-~----~~~~~~~~~dviI 143 (364)
-|+|||+|+..++..+..+|.+|+++|=.-. -++. +++++ ++. +.+... .... . ..+..+.++++||
T Consensus 741 PG~GKTtLal~lA~~aa~~g~~VlyiS~Ees--~~ql-~A~~l-Gvd~~~L~i~~~-~~leei~~~l~~lv~~~~~~lVV 815 (1706)
T 3cmw_A 741 ESSGKTTLTLQVIAAAQREGKTCAFIDAEHA--LDPI-YARKL-GVDIDNLLCSQP-DTGEQALEICDALARSGAVDVIV 815 (1706)
T ss_dssp TTSSHHHHHHHHHHHHHHTTCCEEEECTTSC--CCHH-HHHHT-TCCGGGCEEECC-SSHHHHHHHHHHHHHHTCCSEEE
T ss_pred CCCCcHHHHHHHHHHHHHcCCCeEEEeccch--HHHH-HHHHc-CCChhheEEecC-CcHHHHHHHHHHHHHccCCCEEE
Confidence 4999999999999999989999999987654 2333 36665 321 122111 0111 1 1223356799999
Q ss_pred Ec
Q 017904 144 LD 145 (364)
Q Consensus 144 lD 145 (364)
+|
T Consensus 816 ID 817 (1706)
T 3cmw_A 816 VD 817 (1706)
T ss_dssp ES
T ss_pred Ee
Confidence 99
No 478
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=49.33 E-value=10 Score=37.68 Aligned_cols=33 Identities=27% Similarity=0.342 Sum_probs=25.2
Q ss_pred CCcEEEEcCcccCCCCchHHHHHHHHHHHhCCCceEEEe
Q 017904 60 PVPVISVGNLTWGGNGKTPMVEFLAHCLADSEISPLILT 98 (364)
Q Consensus 60 ~vPVIsVGNltvGGtGKTP~v~~L~~~L~~~g~kvaIls 98 (364)
|.=|+..| .-|||||.++.++|..+ |.....++
T Consensus 206 prGiLL~G---PPGtGKT~lakAiA~~~---~~~~~~v~ 238 (428)
T 4b4t_K 206 PRGVLLYG---PPGTGKTMLVKAVANST---KAAFIRVN 238 (428)
T ss_dssp CCEEEEES---CTTTTHHHHHHHHHHHH---TCEEEEEE
T ss_pred CceEEEEC---CCCCCHHHHHHHHHHHh---CCCeEEEe
Confidence 33488888 47999999999999998 44555443
No 479
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=49.32 E-value=9.2 Score=35.03 Aligned_cols=23 Identities=13% Similarity=0.176 Sum_probs=17.7
Q ss_pred cEEEEcCcccCCCCchHHHHHHHHHH
Q 017904 62 PVISVGNLTWGGNGKTPMVEFLAHCL 87 (364)
Q Consensus 62 PVIsVGNltvGGtGKTP~v~~L~~~L 87 (364)
-|++.| ..|+|||+++..+++.+
T Consensus 33 ~v~i~G---~~G~GKT~Ll~~~~~~~ 55 (350)
T 2qen_A 33 LTLLLG---IRRVGKSSLLRAFLNER 55 (350)
T ss_dssp EEEEEC---CTTSSHHHHHHHHHHHS
T ss_pred eEEEEC---CCcCCHHHHHHHHHHHc
Confidence 344555 37999999999998765
No 480
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=49.14 E-value=8.6 Score=35.15 Aligned_cols=21 Identities=29% Similarity=0.474 Sum_probs=17.6
Q ss_pred CcEEEEcCcccCCCCchHHHHHHH
Q 017904 61 VPVISVGNLTWGGNGKTPMVEFLA 84 (364)
Q Consensus 61 vPVIsVGNltvGGtGKTP~v~~L~ 84 (364)
.-|+.+|| .|+|||+++..|.
T Consensus 4 ~~I~lvG~---~n~GKSTLin~l~ 24 (274)
T 3i8s_A 4 LTIGLIGN---PNSGKTTLFNQLT 24 (274)
T ss_dssp EEEEEEEC---TTSSHHHHHHHHH
T ss_pred cEEEEECC---CCCCHHHHHHHHh
Confidence 35889998 5999999998874
No 481
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=49.10 E-value=9 Score=33.76 Aligned_cols=21 Identities=24% Similarity=0.452 Sum_probs=17.8
Q ss_pred CcEEEEcCcccCCCCchHHHHHHH
Q 017904 61 VPVISVGNLTWGGNGKTPMVEFLA 84 (364)
Q Consensus 61 vPVIsVGNltvGGtGKTP~v~~L~ 84 (364)
.-|+.||. .|+|||+++..++
T Consensus 30 ~~i~lvG~---~g~GKStlin~l~ 50 (239)
T 3lxx_A 30 LRIVLVGK---TGAGKSATGNSIL 50 (239)
T ss_dssp EEEEEECC---TTSSHHHHHHHHH
T ss_pred eEEEEECC---CCCCHHHHHHHHc
Confidence 46889996 5999999998876
No 482
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=49.07 E-value=7.5 Score=37.33 Aligned_cols=25 Identities=24% Similarity=0.444 Sum_probs=20.4
Q ss_pred cEEEEcCcccCCCCchHHHHHHHHHHHh
Q 017904 62 PVISVGNLTWGGNGKTPMVEFLAHCLAD 89 (364)
Q Consensus 62 PVIsVGNltvGGtGKTP~v~~L~~~L~~ 89 (364)
-+.++|- -|+||||++..|+..+..
T Consensus 177 ~i~ivG~---sGsGKSTll~~l~~~~~~ 201 (361)
T 2gza_A 177 VIVVAGE---TGSGKTTLMKALMQEIPF 201 (361)
T ss_dssp CEEEEES---SSSCHHHHHHHHHTTSCT
T ss_pred EEEEECC---CCCCHHHHHHHHHhcCCC
Confidence 5777785 499999999999888754
No 483
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=49.04 E-value=12 Score=32.66 Aligned_cols=33 Identities=18% Similarity=0.220 Sum_probs=24.3
Q ss_pred EEEEcCcccCCCCchHHHHHHHHHHHhCCCceEEEecCCC
Q 017904 63 VISVGNLTWGGNGKTPMVEFLAHCLADSEISPLILTRGYA 102 (364)
Q Consensus 63 VIsVGNltvGGtGKTP~v~~L~~~L~~~g~kvaIlsRGYg 102 (364)
+.++|+ -|||||++...++.. |.++.-+.-+..
T Consensus 2 ilV~Gg---~~SGKS~~A~~la~~----~~~~~yiaT~~~ 34 (180)
T 1c9k_A 2 ILVTGG---ARSGKSRHAEALIGD----APQVLYIATSQI 34 (180)
T ss_dssp EEEEEC---TTSSHHHHHHHHHCS----CSSEEEEECCCC
T ss_pred EEEECC---CCCcHHHHHHHHHhc----CCCeEEEecCCC
Confidence 467776 499999999988754 667777766543
No 484
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=48.97 E-value=10 Score=36.62 Aligned_cols=28 Identities=29% Similarity=0.494 Sum_probs=23.5
Q ss_pred CcEEEEcCcccCCCCchHHHHHHHHHHHhCC
Q 017904 61 VPVISVGNLTWGGNGKTPMVEFLAHCLADSE 91 (364)
Q Consensus 61 vPVIsVGNltvGGtGKTP~v~~L~~~L~~~g 91 (364)
+-|+.+|+. |+|||+++..|.....+.|
T Consensus 4 ~~I~iiG~~---~~GKSTLi~~L~~~~~~~g 31 (397)
T 1d2e_A 4 VNVGTIGHV---DHGKTTLTAAITKILAEGG 31 (397)
T ss_dssp EEEEEESST---TSSHHHHHHHHHHHHHHTT
T ss_pred EEEEEEeCC---CCCHHHHHHHHhChhhhcC
Confidence 458899986 9999999999998776654
No 485
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=48.97 E-value=15 Score=31.58 Aligned_cols=24 Identities=29% Similarity=0.286 Sum_probs=18.7
Q ss_pred EEEEcCcccCCCCchHHHHHHHHHHHh
Q 017904 63 VISVGNLTWGGNGKTPMVEFLAHCLAD 89 (364)
Q Consensus 63 VIsVGNltvGGtGKTP~v~~L~~~L~~ 89 (364)
+..+|- -|+|||+++..++..+..
T Consensus 28 ~~l~G~---nGsGKSTll~~l~g~~~~ 51 (231)
T 4a74_A 28 TEVFGE---FGSGKTQLAHTLAVMVQL 51 (231)
T ss_dssp EEEEES---TTSSHHHHHHHHHHHTTS
T ss_pred EEEECC---CCCCHHHHHHHHHHHHhc
Confidence 556663 599999999999986643
No 486
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=48.56 E-value=3.8 Score=35.29 Aligned_cols=21 Identities=19% Similarity=0.382 Sum_probs=17.0
Q ss_pred CcEEEEcCcccCCCCchHHHHHHH
Q 017904 61 VPVISVGNLTWGGNGKTPMVEFLA 84 (364)
Q Consensus 61 vPVIsVGNltvGGtGKTP~v~~L~ 84 (364)
.-|++||. .|+|||+++..|+
T Consensus 30 ~~i~v~G~---~~~GKSslin~l~ 50 (223)
T 4dhe_A 30 PEIAFAGR---SNAGKSTAINVLC 50 (223)
T ss_dssp CEEEEEES---CHHHHHHHHHHHT
T ss_pred CEEEEEcC---CCCCHHHHHHHHh
Confidence 35788997 4999999988764
No 487
>1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2
Probab=48.34 E-value=70 Score=28.96 Aligned_cols=73 Identities=15% Similarity=0.041 Sum_probs=39.8
Q ss_pred CCCCchHHHHHHHHHHHhCCCceEEEecCCCCCchHHHHHHH--hCCCCEEEeccccchhH-HHhhhcCCCCEEEEcCCC
Q 017904 72 GGNGKTPMVEFLAHCLADSEISPLILTRGYAGGDEVRMLERH--LLERPAKIGKNCINPKV-GSHLKSGKIGAVILDDGM 148 (364)
Q Consensus 72 GGtGKTP~v~~L~~~L~~~g~kvaIlsRGYg~GDE~~lla~~--~~~~~v~v~~~~~~~~~-~~~~~~~~~dviIlDDgf 148 (364)
||||- +=.++++.|.++|++|.++.|.-..+.+.. +... .+.+. .+.+|..+... ...+...++|+||-=-|.
T Consensus 8 GatG~--iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~-~~~l~~~~~~~-~~~~Dl~d~~~~~~~~~~~~~d~vih~A~~ 83 (347)
T 1orr_A 8 GGCGF--LGSNLASFALSQGIDLIVFDNLSRKGATDN-LHWLSSLGNFE-FVHGDIRNKNDVTRLITKYMPDSCFHLAGQ 83 (347)
T ss_dssp TTTSH--HHHHHHHHHHHTTCEEEEEECCCSTTHHHH-HHHHHTTCCCE-EEECCTTCHHHHHHHHHHHCCSEEEECCCC
T ss_pred CCCch--hHHHHHHHHHhCCCEEEEEeCCCccCchhh-hhhhccCCceE-EEEcCCCCHHHHHHHHhccCCCEEEECCcc
Confidence 67763 556888999899999999988643233221 1111 12232 23344333322 223333358988876554
No 488
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=48.16 E-value=11 Score=33.80 Aligned_cols=23 Identities=26% Similarity=0.364 Sum_probs=19.0
Q ss_pred CcEEEEcCcccC--------CCCchHHHHHHHH
Q 017904 61 VPVISVGNLTWG--------GNGKTPMVEFLAH 85 (364)
Q Consensus 61 vPVIsVGNltvG--------GtGKTP~v~~L~~ 85 (364)
..|++||+= | |+|||+++..++.
T Consensus 20 ~ki~lvG~~--~~~~~~~~~~vGKSsLi~~l~~ 50 (255)
T 3c5h_A 20 YNISVVGLS--GTEKEKGQCGIGKSCLCNRFVR 50 (255)
T ss_dssp EEEEEEESC--CCTTTTTTCCCSHHHHHHHHHC
T ss_pred eEEEEECCC--ccccccCCCCcCHHHHHHHHHh
Confidence 579999973 3 9999999988764
No 489
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=48.13 E-value=6.8 Score=32.65 Aligned_cols=21 Identities=29% Similarity=0.431 Sum_probs=17.8
Q ss_pred CCcEEEEcCcccCCCCchHHHHHH
Q 017904 60 PVPVISVGNLTWGGNGKTPMVEFL 83 (364)
Q Consensus 60 ~vPVIsVGNltvGGtGKTP~v~~L 83 (364)
..-|++||+ .|+|||+++..+
T Consensus 22 ~~~i~v~G~---~~~GKssli~~l 42 (189)
T 2x77_A 22 KIRVLMLGL---DNAGKTSILYRL 42 (189)
T ss_dssp CEEEEEEEE---TTSSHHHHHHHT
T ss_pred ceEEEEECC---CCCCHHHHHHHH
Confidence 457999997 599999998876
No 490
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=48.12 E-value=11 Score=36.99 Aligned_cols=28 Identities=25% Similarity=0.312 Sum_probs=22.7
Q ss_pred CCCCchH-HHHHHHHHHHhCCCceEEEec
Q 017904 72 GGNGKTP-MVEFLAHCLADSEISPLILTR 99 (364)
Q Consensus 72 GGtGKTP-~v~~L~~~L~~~g~kvaIlsR 99 (364)
-|||||. ++..++..+..+|.++.|++.
T Consensus 28 TGsGKT~~~~~~~l~~~~~~~~~~lvl~P 56 (451)
T 2jlq_A 28 PGAGKTKRILPSIVREALLRRLRTLILAP 56 (451)
T ss_dssp TTSSCCTTHHHHHHHHHHHTTCCEEEEES
T ss_pred CCCCHhhHHHHHHHHHHHhcCCcEEEECC
Confidence 5999999 577777777778889999873
No 491
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=48.09 E-value=9.3 Score=37.92 Aligned_cols=24 Identities=33% Similarity=0.468 Sum_probs=21.2
Q ss_pred CcEEEEcCcccCCCCchHHHHHHHHHH
Q 017904 61 VPVISVGNLTWGGNGKTPMVEFLAHCL 87 (364)
Q Consensus 61 vPVIsVGNltvGGtGKTP~v~~L~~~L 87 (364)
-+++..|. -|||||+++..+++.+
T Consensus 51 ~~vLL~Gp---pGtGKTtlAr~ia~~~ 74 (447)
T 3pvs_A 51 HSMILWGP---PGTGKTTLAEVIARYA 74 (447)
T ss_dssp CEEEEECS---TTSSHHHHHHHHHHHT
T ss_pred cEEEEECC---CCCcHHHHHHHHHHHh
Confidence 37889996 5999999999999987
No 492
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=48.02 E-value=11 Score=36.79 Aligned_cols=23 Identities=22% Similarity=0.223 Sum_probs=19.3
Q ss_pred cEEEEcCcccCCCCchHHHHHHHHHH
Q 017904 62 PVISVGNLTWGGNGKTPMVEFLAHCL 87 (364)
Q Consensus 62 PVIsVGNltvGGtGKTP~v~~L~~~L 87 (364)
-+..+|.- |||||+++..|+..+
T Consensus 171 ~i~l~G~~---GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 171 YWLFKGPI---DSGKTTLAAALLELC 193 (377)
T ss_dssp EEEEECST---TSSHHHHHHHHHHHH
T ss_pred EEEEECCC---CCCHHHHHHHHHhhc
Confidence 46678864 999999999999876
No 493
>1udb_A Epimerase, UDP-galactose-4-epimerase; isomerase; HET: NAD UFG; 1.65A {Escherichia coli} SCOP: c.2.1.2 PDB: 1lrj_A* 1nai_A* 1uda_A* 1nah_A* 1xel_A* 1kvq_A* 1kvs_A* 1udc_A* 2udp_A* 1a9z_A* 1kvt_A* 1kvr_A* 1lrk_A* 1lrl_A* 1kvu_A* 1a9y_A*
Probab=47.97 E-value=94 Score=28.13 Aligned_cols=74 Identities=20% Similarity=0.172 Sum_probs=39.8
Q ss_pred CCCCchHHHHHHHHHHHhCCCceEEEecCCCCCchHH-HHHHHhC-CCCEEEeccccchhH-HHhhhcCCCCEEEEcCCC
Q 017904 72 GGNGKTPMVEFLAHCLADSEISPLILTRGYAGGDEVR-MLERHLL-ERPAKIGKNCINPKV-GSHLKSGKIGAVILDDGM 148 (364)
Q Consensus 72 GGtGKTP~v~~L~~~L~~~g~kvaIlsRGYg~GDE~~-lla~~~~-~~~v~v~~~~~~~~~-~~~~~~~~~dviIlDDgf 148 (364)
||||- +=.++++.|.++|++|.++.|.-.+..+.. .+..... .+ ..+-+|..+... ...+...++|+||-=-|.
T Consensus 7 GatG~--iG~~l~~~L~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Dl~~~~~~~~~~~~~~~D~vih~A~~ 83 (338)
T 1udb_A 7 GGSGY--IGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHP-TFVEGDIRNEALMTEILHDHAIDTVIHFAGL 83 (338)
T ss_dssp TTTSH--HHHHHHHHHHHTTCEEEEEECCSSCCTTHHHHHHHHHTSCC-EEEECCTTCHHHHHHHHHHTTCSEEEECCSC
T ss_pred CCCCH--HHHHHHHHHHHCCCEEEEEecCCCcchhHHHHHHhhcCCcc-eEEEccCCCHHHHHHHhhccCCCEEEECCcc
Confidence 67763 446788889899999999987543223322 1222111 22 223344333332 233444468988865443
No 494
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=47.96 E-value=10 Score=37.44 Aligned_cols=35 Identities=14% Similarity=0.119 Sum_probs=26.5
Q ss_pred cEEEEcCcccCCCCchHH-HHHHHHHHHhCCCceEEEec
Q 017904 62 PVISVGNLTWGGNGKTPM-VEFLAHCLADSEISPLILTR 99 (364)
Q Consensus 62 PVIsVGNltvGGtGKTP~-v~~L~~~L~~~g~kvaIlsR 99 (364)
-||+++ .-|||||.. ...+++.+.++|.++.|++-
T Consensus 23 ~vlv~a---~TGsGKT~~~~l~il~~~~~~~~~~lvl~P 58 (459)
T 2z83_A 23 MTVLDL---HPGSGKTRKILPQIIKDAIQQRLRTAVLAP 58 (459)
T ss_dssp EEEECC---CTTSCTTTTHHHHHHHHHHHTTCCEEEEEC
T ss_pred cEEEEC---CCCCCHHHHHHHHHHHHHHhCCCcEEEECc
Confidence 355555 359999996 78888877778889999874
No 495
>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}
Probab=47.87 E-value=13 Score=33.55 Aligned_cols=30 Identities=20% Similarity=0.202 Sum_probs=24.7
Q ss_pred cCCCCchHHHHHHHHHHHhCCCceEEEecCCC
Q 017904 71 WGGNGKTPMVEFLAHCLADSEISPLILTRGYA 102 (364)
Q Consensus 71 vGGtGKTP~v~~L~~~L~~~g~kvaIlsRGYg 102 (364)
.|||| =+=.+|++.|.++|++|.+++|.=+
T Consensus 6 TGatG--fIG~~L~~~L~~~G~~V~~l~R~~~ 35 (298)
T 4b4o_A 6 GGGTG--FIGTALTQLLNARGHEVTLVSRKPG 35 (298)
T ss_dssp ETTTS--HHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred ECCCC--HHHHHHHHHHHHCCCEEEEEECCCC
Confidence 47888 3567899999999999999999643
No 496
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=47.76 E-value=11 Score=37.07 Aligned_cols=35 Identities=23% Similarity=0.282 Sum_probs=26.0
Q ss_pred CCcEEEEcCcccCCCCchHHHHHHHHHHHhCCCceEEEe
Q 017904 60 PVPVISVGNLTWGGNGKTPMVEFLAHCLADSEISPLILT 98 (364)
Q Consensus 60 ~vPVIsVGNltvGGtGKTP~v~~L~~~L~~~g~kvaIls 98 (364)
+..++..|. -|||||.++..+++.+... ....-++
T Consensus 63 ~~~iLl~Gp---pGtGKT~la~ala~~l~~~-~~~~~~~ 97 (456)
T 2c9o_A 63 GRAVLLAGP---PGTGKTALALAIAQELGSK-VPFCPMV 97 (456)
T ss_dssp TCEEEEECC---TTSSHHHHHHHHHHHHCTT-SCEEEEE
T ss_pred CCeEEEECC---CcCCHHHHHHHHHHHhCCC-ceEEEEe
Confidence 356899996 5999999999999998432 4444443
No 497
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=47.71 E-value=9.5 Score=34.53 Aligned_cols=22 Identities=27% Similarity=0.634 Sum_probs=18.4
Q ss_pred CCcEEEEcCcccCCCCchHHHHHHH
Q 017904 60 PVPVISVGNLTWGGNGKTPMVEFLA 84 (364)
Q Consensus 60 ~vPVIsVGNltvGGtGKTP~v~~L~ 84 (364)
..-|++||. .|+|||+++..|+
T Consensus 39 ~~~I~vvG~---~g~GKSSLin~l~ 60 (270)
T 1h65_A 39 SLTILVMGK---GGVGKSSTVNSII 60 (270)
T ss_dssp EEEEEEEES---TTSSHHHHHHHHH
T ss_pred CeEEEEECC---CCCCHHHHHHHHh
Confidence 356889997 5999999998876
No 498
>3lrx_A Putative hydrogenase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.60A {Pyrococcus furiosus}
Probab=47.62 E-value=9.7 Score=31.98 Aligned_cols=36 Identities=11% Similarity=0.110 Sum_probs=26.7
Q ss_pred CCcEEEEcCcccCCCCchHHHHHHHHHHHhCCCceEEEecCCC
Q 017904 60 PVPVISVGNLTWGGNGKTPMVEFLAHCLADSEISPLILTRGYA 102 (364)
Q Consensus 60 ~vPVIsVGNltvGGtGKTP~v~~L~~~L~~~g~kvaIlsRGYg 102 (364)
.-|++.|+ ||||=||+.. +++.+.++|.++.++ |.+
T Consensus 23 ~~~~llIa----GG~GItPl~s-m~~~l~~~~~~v~l~--g~r 58 (158)
T 3lrx_A 23 FGKILAIG----AYTGIVEVYP-IAKAWQEIGNDVTTL--HVT 58 (158)
T ss_dssp CSEEEEEE----ETTHHHHHHH-HHHHHHHHTCEEEEE--EEC
T ss_pred CCeEEEEE----ccCcHHHHHH-HHHHHHhcCCcEEEE--EeC
Confidence 45899998 9999999886 456666666666555 654
No 499
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=47.41 E-value=8.6 Score=35.79 Aligned_cols=22 Identities=23% Similarity=0.498 Sum_probs=17.9
Q ss_pred CcEEEEcCcccCCCCchHHHHHHHH
Q 017904 61 VPVISVGNLTWGGNGKTPMVEFLAH 85 (364)
Q Consensus 61 vPVIsVGNltvGGtGKTP~v~~L~~ 85 (364)
..|+.+|+ .|+|||+++..+..
T Consensus 4 ~KI~lvG~---~~vGKSSLi~~l~~ 25 (307)
T 3r7w_A 4 SKLLLMGR---SGSGKSSMRSIIFS 25 (307)
T ss_dssp EEEEEECC---TTSSHHHHHHHHHS
T ss_pred eEEEEECC---CCCCHHHHHHHHHh
Confidence 46899998 69999999886543
No 500
>3mw8_A Uroporphyrinogen-III synthase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, lyase; 1.65A {Shewanella amazonensis}
Probab=47.25 E-value=29 Score=30.67 Aligned_cols=68 Identities=15% Similarity=0.112 Sum_probs=42.7
Q ss_pred ccCCCeEEEEecCCChHHHHHHHHHhCCcccccccCCCCC-CCCHHHHHHHHHHHHhhhcCCCCCCeEEecccCccc
Q 017904 245 AVCNANVLCVSAIGSANAFVQSLQKLGPCSVNRLDFNDHH-SFQARDIEMIKKKLEELEGKFNPKPIVVVTEKDYDR 320 (364)
Q Consensus 245 ~~~~~~v~a~sGIg~P~~F~~~L~~~G~~~~~~~~f~DHh-~yt~~dl~~l~~~~~~~~~~~~~~~~ivtTEKDaVK 320 (364)
...|++++.++|-+..+.+.+.|++.|+++.....|.-.. ....+++.+.. +.. .-+.|+.|---.|+
T Consensus 117 ~~~g~~vL~~rg~~~r~~l~~~L~~~G~~v~~~~~Y~~~~~~~~~~~~~~~l---~~~-----~~d~v~ftS~s~v~ 185 (240)
T 3mw8_A 117 QVSGKQIVIVRGKGGREAMADGLRLRGANVSYLEVYQRACPPLDAPASVSRW---QSF-----GIDTIVVTSGEVLE 185 (240)
T ss_dssp CCTTCEEEEEEESSSCCHHHHHHHHTTCEEEEEEEEEEECCCCCHHHHHHHH---HHH-----TCCEEECCSHHHHH
T ss_pred cCCCCEEEEEeCCCcHHHHHHHHHHCCCEEEEEEEEEeeCCCCCHHHHHHHH---HhC-----CCCEEEEcCHHHHH
Confidence 3578999999998888889999999999875544443221 22344443322 111 13467777665555
Done!