BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017906
(364 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|225452017|ref|XP_002283656.1| PREDICTED: putative DNA repair protein RAD23-3 isoform 1 [Vitis
vinifera]
gi|296087286|emb|CBI33660.3| unnamed protein product [Vitis vinifera]
Length = 381
Score = 521 bits (1342), Expect = e-145, Method: Compositional matrix adjust.
Identities = 271/363 (74%), Positives = 300/363 (82%), Gaps = 21/363 (5%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+FVKTLKGTHFEIEVKPED V+DVKKNIE V G+DVYPA+QQMLIHQGKVLKD TTL+
Sbjct: 1 MKIFVKTLKGTHFEIEVKPEDTVADVKKNIELVHGTDVYPAAQQMLIHQGKVLKDATTLD 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
EN+VAE+SFVV+ML+K+KVS+ GAST SAAP +QAQ SS+PPTS QP+T Q AP VA
Sbjct: 61 ENQVAESSFVVIMLSKNKVSAGGASTTSAAPTSQAQPVSSSPPTSNQPSTAPQ--APVVA 118
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P+ +PE PAPA AP+ +SS SD+YGQAASNLVAG+NLE T+QQIL
Sbjct: 119 LPEVIPE-------PAPAVAPS---------ISSDSDIYGQAASNLVAGNNLEVTIQQIL 162
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
DMGGGSWDR+TV+RALRAAYNNPERAVEYLYSGIPEQ PP AR A G A N P Q
Sbjct: 163 DMGGGSWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEGPPAARPPASGLAVNLPTQA- 221
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQIL 300
Q P +SGPNANPLDLFPQGLP+MGSNA AGTLDFLRNS QFQALR MVQANPQIL
Sbjct: 222 PQGPQTTVASSGPNANPLDLFPQGLPSMGSNASAGTLDFLRNSPQFQALRAMVQANPQIL 281
Query: 301 QPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEERE 360
QPMLQELGKQNPHLMRLIQEHQ DFLRLINEPVE GEGNVLGQL + +PQAVT+TPEERE
Sbjct: 282 QPMLQELGKQNPHLMRLIQEHQADFLRLINEPVE-GEGNVLGQLGT-VPQAVTITPEERE 339
Query: 361 AIE 363
+IE
Sbjct: 340 SIE 342
>gi|255551362|ref|XP_002516727.1| uv excision repair protein rad23, putative [Ricinus communis]
gi|223544100|gb|EEF45625.1| uv excision repair protein rad23, putative [Ricinus communis]
Length = 381
Score = 520 bits (1339), Expect = e-145, Method: Compositional matrix adjust.
Identities = 270/363 (74%), Positives = 296/363 (81%), Gaps = 21/363 (5%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKVFVKTLKGT+FEI+VKPED V DVK NIE QG+DVYPASQQMLIHQGKVLKD TTLE
Sbjct: 1 MKVFVKTLKGTNFEIDVKPEDTVEDVKNNIEIAQGADVYPASQQMLIHQGKVLKDGTTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKVAENSF+V+ML+K KVS SG ST S+AP +QAQ S+ PP++TQP+TT+Q PA T
Sbjct: 61 ENKVAENSFIVIMLSKRKVSPSGGSTASSAPPSQAQPASTLPPSATQPSTTAQAPAVTAE 120
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
PQS ES P PVSS +D+YGQAASNLVAGSNLEATVQQIL
Sbjct: 121 LPQSAAES-----------------TPVVNPVSSETDIYGQAASNLVAGSNLEATVQQIL 163
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
DMGGGSWDRETV RALRAA+NNPERAVEYLYSGIPEQ V P+ RA + GQA P A
Sbjct: 164 DMGGGSWDRETVARALRAAFNNPERAVEYLYSGIPEQPEVQPLPRAPSSGQAAIPSA--T 221
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQIL 300
AQ+PAAP + G NANPLDLFPQGLP +GS AGTLDFLRNSQQFQALR MVQANPQIL
Sbjct: 222 AQEPAAPT-SGGANANPLDLFPQGLPTIGSTTSAGTLDFLRNSQQFQALRAMVQANPQIL 280
Query: 301 QPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEERE 360
QPMLQELGKQNPHLMRLIQEHQ DFLRLINEPVE G+GN+LGQLASA+PQ+V+VTPEERE
Sbjct: 281 QPMLQELGKQNPHLMRLIQEHQADFLRLINEPVE-GDGNLLGQLASAVPQSVSVTPEERE 339
Query: 361 AIE 363
AIE
Sbjct: 340 AIE 342
>gi|224079274|ref|XP_002305813.1| predicted protein [Populus trichocarpa]
gi|222848777|gb|EEE86324.1| predicted protein [Populus trichocarpa]
Length = 385
Score = 493 bits (1268), Expect = e-137, Method: Compositional matrix adjust.
Identities = 266/366 (72%), Positives = 293/366 (80%), Gaps = 23/366 (6%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKVFVKTLKGT+FEIEVKPED V+DVKKNIE+VQG+DVYPA+QQML++QGKVLKD TTL+
Sbjct: 1 MKVFVKTLKGTNFEIEVKPEDTVADVKKNIESVQGADVYPAAQQMLVYQGKVLKDDTTLD 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKV+E+SF VVML+KSKVSS G ST AAPA+QA SS P TQP+ TSQ P P A
Sbjct: 61 ENKVSESSFFVVMLSKSKVSSGGPSTAPAAPASQAPPASSLPSNVTQPSITSQAPVPAAA 120
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
PQS ES+P A +++YGQAASNLVAGSNLEAT+Q+IL
Sbjct: 121 LPQSAAESSPAVVTSALLD----------------TNMYGQAASNLVAGSNLEATIQEIL 164
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAG---GQAGNPPA 237
DMGGG W+RETV+RALRAA+NNPERA++YLYSGIPEQ VPPVA+ G G A NPPA
Sbjct: 165 DMGGGDWNRETVVRALRAAFNNPERAIDYLYSGIPEQAEVPPVAQVVQGPASGNAVNPPA 224
Query: 238 QTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANP 297
A QP AP SGPNANPLDLFPQG + GSNAG G LDFLRNSQQFQALR MVQANP
Sbjct: 225 L--APQPVV-APNSGPNANPLDLFPQGHHSTGSNAGTGNLDFLRNSQQFQALRAMVQANP 281
Query: 298 QILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPE 357
QILQPMLQELGKQNP+LMRLIQEHQ DFLRLINEPVE GEGNVLGQLASAMPQAVTVTPE
Sbjct: 282 QILQPMLQELGKQNPYLMRLIQEHQADFLRLINEPVE-GEGNVLGQLASAMPQAVTVTPE 340
Query: 358 EREAIE 363
EREAIE
Sbjct: 341 EREAIE 346
>gi|5640111|emb|CAB51544.1| RAD23 protein [Solanum lycopersicum var. cerasiforme]
Length = 389
Score = 490 bits (1262), Expect = e-136, Method: Compositional matrix adjust.
Identities = 272/372 (73%), Positives = 291/372 (78%), Gaps = 31/372 (8%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+FVKTLKGTHFEIEVKPED V+DVKKNIE+VQG DVYPA+QQMLIHQGKVLKD TTLE
Sbjct: 1 MKIFVKTLKGTHFEIEVKPEDSVADVKKNIESVQGQDVYPAAQQMLIHQGKVLKDTTTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTST-QPTTTSQTPAPTV 119
ENKVAENSFVV+ML+K+KVSS+G S++SAA +N AQ P ST Q T TP T
Sbjct: 61 ENKVAENSFVVIMLSKNKVSSTGTSSISAALSNTAQ-----PDGSTDQARQTITTPQATA 115
Query: 120 APPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQI 179
A PQS ESAP PA A SSV+DVY QAASNLVAGSNLE TVQQI
Sbjct: 116 ALPQSASESAPTPAPVPAAA-------------SSVTDVYDQAASNLVAGSNLETTVQQI 162
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAV--------PPVARASAGGQ 231
LDMGGGSWDR+TV+RALRAAYNNPERAV+YLYSGIPEQT + P A A Q
Sbjct: 163 LDMGGGSWDRDTVVRALRAAYNNPERAVDYLYSGIPEQTEIPPVARAPAAPAVTAPASAQ 222
Query: 232 AGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRT 291
A NP AQ +Q P+SGPNANPLDLFPQGL N GSNAGAG LDFLRNS QFQALR
Sbjct: 223 AINPAAQDASQ---LAVPSSGPNANPLDLFPQGLTNAGSNAGAGNLDFLRNSPQFQALRA 279
Query: 292 MVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQA 351
MVQANPQILQPMLQELGKQNPHLMRLIQEHQ DFLRLINEPVE GEGNVLGQ A A+PQA
Sbjct: 280 MVQANPQILQPMLQELGKQNPHLMRLIQEHQPDFLRLINEPVE-GEGNVLGQTAGAIPQA 338
Query: 352 VTVTPEEREAIE 363
VTVTPEEREAIE
Sbjct: 339 VTVTPEEREAIE 350
>gi|363807216|ref|NP_001242098.1| uncharacterized protein LOC100813881 [Glycine max]
gi|255641670|gb|ACU21107.1| unknown [Glycine max]
Length = 400
Score = 488 bits (1256), Expect = e-135, Method: Compositional matrix adjust.
Identities = 274/367 (74%), Positives = 297/367 (80%), Gaps = 10/367 (2%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKVFVKTLKGTHFEIEV P D +S+VKKNIETVQG+DVYPA+QQMLIHQGKVLKD TTLE
Sbjct: 1 MKVFVKTLKGTHFEIEVNPSDTLSEVKKNIETVQGADVYPAAQQMLIHQGKVLKDGTTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKVAE+SF+V+ML+K+K SS ST S AP+ + SA PTST +T Q PA T A
Sbjct: 61 ENKVAESSFIVIMLSKTKSSSGEGSTTSTAPSAK----PSATPTSTSVSTAPQAPASTGA 116
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSV--SDVYGQAASNLVAGSNLEATVQQ 178
V PA APAPAPAP + SSV SD+YGQAASNLVAGSNLE T+QQ
Sbjct: 117 SATPVTAPTAAPAPAPAPAAPAPAPAPIFSG-SSVPESDIYGQAASNLVAGSNLEGTIQQ 175
Query: 179 ILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQ 238
ILDMGGGSWDR+TV+R LRAAYNNPERAVEYLYSGIPEQ PPV A Q NPPA
Sbjct: 176 ILDMGGGSWDRDTVVRTLRAAYNNPERAVEYLYSGIPEQAEAPPVTGVPASAQPSNPPAD 235
Query: 239 T-QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSN-AGAGTLDFLRNSQQFQALRTMVQAN 296
T QA QPA+ P+SGPNANPLDLFPQGLPN+GS AGAG+LDFLRNSQQFQALR MVQAN
Sbjct: 236 TPQAAQPAS-VPSSGPNANPLDLFPQGLPNVGSGAAGAGSLDFLRNSQQFQALRAMVQAN 294
Query: 297 PQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTP 356
PQILQPMLQELGKQNPHLMRLIQEHQ DFLRLINEPVEGGEGN+LGQLA MPQAVTVTP
Sbjct: 295 PQILQPMLQELGKQNPHLMRLIQEHQVDFLRLINEPVEGGEGNILGQLAGTMPQAVTVTP 354
Query: 357 EEREAIE 363
EER+AIE
Sbjct: 355 EERQAIE 361
>gi|358248820|ref|NP_001240201.1| uncharacterized protein LOC100809066 [Glycine max]
gi|255644546|gb|ACU22776.1| unknown [Glycine max]
Length = 392
Score = 486 bits (1251), Expect = e-135, Method: Compositional matrix adjust.
Identities = 270/364 (74%), Positives = 293/364 (80%), Gaps = 12/364 (3%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKVFVKTLKGTHFEIEV P D +S+VKKNIETVQG+DVYPA+QQMLIHQGKVLKD TTLE
Sbjct: 1 MKVFVKTLKGTHFEIEVNPSDTLSEVKKNIETVQGADVYPAAQQMLIHQGKVLKDGTTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKVAENSF+V+ML+K+K SS ST S AP+ +A SA PTST + Q PA T A
Sbjct: 61 ENKVAENSFIVIMLSKTKSSSGEGSTTSTAPSVKA----SATPTSTSVSAAPQAPASTGA 116
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P V A P +A APAP + + P SD+YGQAASNLVAGSNLE T+QQIL
Sbjct: 117 TPTPVTAPAAPASAAAPAPISSGSAVPE-------SDIYGQAASNLVAGSNLEGTIQQIL 169
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
DMGGGSWDR+TV+RALRAAYNNPERAVEYLYSGIPEQ PPV R A Q NPPA
Sbjct: 170 DMGGGSWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEAPPVTREPASAQPANPPAAAP 229
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSN-AGAGTLDFLRNSQQFQALRTMVQANPQI 299
A P+SGPNANPLDLFPQGLPN+GS AGAG+LDFLRNSQQFQALR MVQANPQI
Sbjct: 230 QAAQPASVPSSGPNANPLDLFPQGLPNVGSGAAGAGSLDFLRNSQQFQALRAMVQANPQI 289
Query: 300 LQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEER 359
LQPMLQELGKQNPHLMRLIQEHQ DFLRLINEPVEGGEGN+LGQLASAMPQAVTVTPEER
Sbjct: 290 LQPMLQELGKQNPHLMRLIQEHQVDFLRLINEPVEGGEGNILGQLASAMPQAVTVTPEER 349
Query: 360 EAIE 363
+AIE
Sbjct: 350 QAIE 353
>gi|297832888|ref|XP_002884326.1| hypothetical protein ARALYDRAFT_477488 [Arabidopsis lyrata subsp.
lyrata]
gi|297330166|gb|EFH60585.1| hypothetical protein ARALYDRAFT_477488 [Arabidopsis lyrata subsp.
lyrata]
Length = 417
Score = 485 bits (1249), Expect = e-134, Method: Compositional matrix adjust.
Identities = 271/394 (68%), Positives = 302/394 (76%), Gaps = 47/394 (11%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+FVKTLKGTHFEIEVK ED V+DVKKNIETVQG+DVYPA++QMLIHQGKVLKD TT+E
Sbjct: 1 MKIFVKTLKGTHFEIEVKLEDSVADVKKNIETVQGADVYPAAKQMLIHQGKVLKDETTIE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAP--- 117
ENKVAENSF+VVML KSK +S+GAS+ SA S PP+++QP+ + QTPA
Sbjct: 61 ENKVAENSFIVVMLNKSKPASTGASSASAG----TSQAKSTPPSTSQPSISPQTPASVAA 116
Query: 118 -----------------------TVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSS 154
TV P +PE P PA P+ PAP AP S
Sbjct: 117 PVAPAPTRAPPPAPTPAPVAATETVTTP--IPE-------PVPATIPSSTPAPDSAPAGS 167
Query: 155 VSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGI 214
DVYGQAASNL AGSNLE+T+QQILDMGGG+WDRETV+RALRAA+NNPERAVEYLY+GI
Sbjct: 168 QGDVYGQAASNLAAGSNLESTIQQILDMGGGTWDRETVVRALRAAFNNPERAVEYLYTGI 227
Query: 215 PEQTAVPPVARASAG-GQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAG 273
PEQ VPPVARA A GQ NP AQTQ QPAA AP SGPNANPLDLFPQGLPN+G N G
Sbjct: 228 PEQAEVPPVARAPASFGQPANPSAQTQ--QPAA-APASGPNANPLDLFPQGLPNVGGNPG 284
Query: 274 AGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPV 333
AGTLDFLRNSQQFQALR MVQANPQ+LQPMLQELGKQNP+LMRLIQ+HQ DFLRLINEPV
Sbjct: 285 AGTLDFLRNSQQFQALRAMVQANPQVLQPMLQELGKQNPNLMRLIQDHQADFLRLINEPV 344
Query: 334 EGG--EGNVLGQLASAM--PQAVTVTPEEREAIE 363
EGG GN+LGQ+A+ M PQA+ VTPEEREAIE
Sbjct: 345 EGGGESGNLLGQMAAGMPQPQAIQVTPEEREAIE 378
>gi|356575534|ref|XP_003555895.1| PREDICTED: putative DNA repair protein RAD23-3-like isoform 1
[Glycine max]
Length = 402
Score = 485 bits (1249), Expect = e-134, Method: Compositional matrix adjust.
Identities = 253/365 (69%), Positives = 287/365 (78%), Gaps = 5/365 (1%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKVFVKTLKGTHFEIEV P+D VS+VKKNIETVQG+DVYPA+QQMLIHQGKVL+D TTLE
Sbjct: 1 MKVFVKTLKGTHFEIEVTPQDTVSEVKKNIETVQGADVYPAAQQMLIHQGKVLRDATTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKVAEN+F+V+ML+KSK +S ST S A + +A TS+ P ++ P + AP A
Sbjct: 61 ENKVAENTFIVIMLSKSKSTSGEGSTTSTALSTKAPQTSTVPAST--PPVSVAPQAPAPA 118
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
++P S P + + SD+YGQAASNLVAGSNLE T+QQIL
Sbjct: 119 ATGALPASVTAPVSSPSPAPAPAPAPISSGTAVEGSDIYGQAASNLVAGSNLEGTIQQIL 178
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT- 239
DMGGGSWDR+TV+RALRAAYNNPERAVEYLY+GIPEQ P VARA Q NPPA
Sbjct: 179 DMGGGSWDRDTVVRALRAAYNNPERAVEYLYTGIPEQAEAPLVARAPVSAQPTNPPADAP 238
Query: 240 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSN-AGAGTLDFLRNSQQFQALRTMVQANPQ 298
Q QPAA ++GPNANPLDLFPQGLPN+GS AGAG+LDFLRNSQQFQALR MVQANPQ
Sbjct: 239 QTAQPAA-VTSAGPNANPLDLFPQGLPNVGSGAAGAGSLDFLRNSQQFQALRAMVQANPQ 297
Query: 299 ILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEE 358
ILQPMLQELGKQNPHLMRLI++HQ DFLRLINEP EGGEGN+LGQ+AS MPQAVTVTPEE
Sbjct: 298 ILQPMLQELGKQNPHLMRLIRDHQADFLRLINEPAEGGEGNILGQMASGMPQAVTVTPEE 357
Query: 359 REAIE 363
R+AIE
Sbjct: 358 RQAIE 362
>gi|224127650|ref|XP_002329330.1| predicted protein [Populus trichocarpa]
gi|222870784|gb|EEF07915.1| predicted protein [Populus trichocarpa]
Length = 384
Score = 483 bits (1243), Expect = e-134, Method: Compositional matrix adjust.
Identities = 265/370 (71%), Positives = 295/370 (79%), Gaps = 32/370 (8%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVS-DVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTL 59
MKVFVKTLKGT+FEIEVKPED V +VKKNIE VQG+DVYPA+QQMLI+QGKVLKD TTL
Sbjct: 1 MKVFVKTLKGTNFEIEVKPEDTVVVEVKKNIENVQGADVYPAAQQMLIYQGKVLKDDTTL 60
Query: 60 EENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQ----TTSSAPPT--STQPTTTSQ 113
+E+KVAENSF+VVML+KSKVSS G ST +AAP N + T ++APPT S QPT+
Sbjct: 61 DESKVAENSFIVVMLSKSKVSSGGPSTATAAPPNVSSGGPSTATAAPPTLVSAQPTS--- 117
Query: 114 TPAPTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLE 173
S+P + P++ + A PA A + A D+YGQAASNLVAGSNLE
Sbjct: 118 ----------SLPSNVTQPSSTSQAAVPAAAFSDA--------DMYGQAASNLVAGSNLE 159
Query: 174 ATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAG 233
AT+QQILDMGGGSW+RETV+RALRAA+NNPERAVEYLYSGIPEQ VPPVA+ A G A
Sbjct: 160 ATIQQILDMGGGSWNRETVVRALRAAFNNPERAVEYLYSGIPEQAEVPPVAQGPASGVAV 219
Query: 234 NPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMV 293
NPPAQ Q + GPNANPLDLFPQGLP+ GSNAGAG LDFLRNSQQFQALR MV
Sbjct: 220 NPPAQAQQPAAPP---SGGPNANPLDLFPQGLPSTGSNAGAGNLDFLRNSQQFQALRAMV 276
Query: 294 QANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVT 353
QANPQILQPMLQELGKQNPHLMRLIQEHQ DFLRLINEPVE GEGNVLGQLASA+PQ VT
Sbjct: 277 QANPQILQPMLQELGKQNPHLMRLIQEHQPDFLRLINEPVE-GEGNVLGQLASAVPQTVT 335
Query: 354 VTPEEREAIE 363
VTPEEREAI+
Sbjct: 336 VTPEEREAID 345
>gi|15232924|ref|NP_186903.1| putative DNA repair protein RAD23-3 [Arabidopsis thaliana]
gi|55976503|sp|Q84L31.2|RD23C_ARATH RecName: Full=Putative DNA repair protein RAD23-3; AltName:
Full=RAD23-like protein 3; Short=AtRAD23-3
gi|6957717|gb|AAF32461.1| putative RAD23 [Arabidopsis thaliana]
gi|14517454|gb|AAK62617.1| AT3g02540/F16B3_17 [Arabidopsis thaliana]
gi|21360453|gb|AAM47342.1| AT3g02540/F16B3_17 [Arabidopsis thaliana]
gi|30409724|dbj|BAC76392.1| RAD23-like protein [Arabidopsis thaliana]
gi|110735092|gb|ABG89116.1| Rad23-1 [synthetic construct]
gi|332640303|gb|AEE73824.1| putative DNA repair protein RAD23-3 [Arabidopsis thaliana]
Length = 419
Score = 483 bits (1242), Expect = e-134, Method: Compositional matrix adjust.
Identities = 267/396 (67%), Positives = 304/396 (76%), Gaps = 49/396 (12%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+FVKTLKGTHFEIEVKPED V DVKKNIE+VQG+DVYPA++QMLIHQGKVLKD TT+E
Sbjct: 1 MKIFVKTLKGTHFEIEVKPEDSVVDVKKNIESVQGADVYPAAKQMLIHQGKVLKDETTIE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAP--- 117
ENKVAENSF+V+M+ KSK +S+ AS+ SA +QA+ S PP+++QP+ + QTPA
Sbjct: 61 ENKVAENSFIVIMMNKSKPASAAASSASAG-TSQAK---SIPPSTSQPSISPQTPASVSA 116
Query: 118 -------------------------TVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPV 152
TV P +PE P PA + PAP APV
Sbjct: 117 PVAPAPTRPPPPAPTPTPAPVAATETVTTP--IPE-------PVPATISSSTPAPDSAPV 167
Query: 153 SSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYS 212
S DVYGQAASNL AGSNLE+T+QQILDMGGG+WDRETV+ ALRAA+NNPERAVEYLY+
Sbjct: 168 GSQGDVYGQAASNLAAGSNLESTIQQILDMGGGTWDRETVVLALRAAFNNPERAVEYLYT 227
Query: 213 GIPEQTAVPPVARA-SAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSN 271
GIPEQ VPPVAR ++ GQ NPPAQTQ QPAA AP SGPNANPLDLFPQGLPN+G N
Sbjct: 228 GIPEQAEVPPVARPPASAGQPANPPAQTQ--QPAA-APASGPNANPLDLFPQGLPNVGGN 284
Query: 272 AGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINE 331
GAGTLDFLRNSQQFQALR MVQANPQ+LQPMLQELGKQNP+LMRLIQ+HQ DFLRLINE
Sbjct: 285 PGAGTLDFLRNSQQFQALRAMVQANPQVLQPMLQELGKQNPNLMRLIQDHQADFLRLINE 344
Query: 332 PVEGG--EGNVLGQLASAM--PQAVTVTPEEREAIE 363
PVEGG GN+LGQ+A+ M PQA+ VT EEREAIE
Sbjct: 345 PVEGGGESGNLLGQMAAGMPQPQAIQVTHEEREAIE 380
>gi|225423953|ref|XP_002282352.1| PREDICTED: putative DNA repair protein RAD23-3 [Vitis vinifera]
gi|297737829|emb|CBI27030.3| unnamed protein product [Vitis vinifera]
Length = 397
Score = 481 bits (1239), Expect = e-133, Method: Compositional matrix adjust.
Identities = 255/363 (70%), Positives = 279/363 (76%), Gaps = 7/363 (1%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+FVKTLKGTHFEI+VKPED V+DVK NIE VQGSDVYPASQQMLIHQGKVLKD TTL+
Sbjct: 1 MKIFVKTLKGTHFEIQVKPEDTVADVKANIEAVQGSDVYPASQQMLIHQGKVLKDGTTLD 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKVAENSFVVVML SK +S + ++ A + P + +
Sbjct: 61 ENKVAENSFVVVML--SKNKNSSEGSTASTAPAPAPAPAPTPIVKAPSASAPPPTTTSTL 118
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P P A + V S +D YGQAASNLVAG+N E +QQIL
Sbjct: 119 TAPQAP-VVALPPPATVPAPAPAATPASTVTVVSETDAYGQAASNLVAGNNFEEAIQQIL 177
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
DMGGG+WDR+TV+RALRAAYNNPERAVEYLYSGIPEQ VPPVARA A GQA NPPAQ+Q
Sbjct: 178 DMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVPPVARAPASGQAANPPAQSQ 237
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSN-AGAGTLDFLRNSQQFQALRTMVQANPQI 299
QP PAP+SGPNANPLDLFPQG+PN+GSN AGAGTLDFLRNSQQFQALR MVQANPQI
Sbjct: 238 --QPV-PAPSSGPNANPLDLFPQGIPNVGSNPAGAGTLDFLRNSQQFQALRAMVQANPQI 294
Query: 300 LQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEER 359
LQPMLQELGKQNP LMRLIQEHQ DFLRLINEPVEGGEGN+LGQLA+AMPQAVTVTPEER
Sbjct: 295 LQPMLQELGKQNPQLMRLIQEHQADFLRLINEPVEGGEGNILGQLAAAMPQAVTVTPEER 354
Query: 360 EAI 362
EAI
Sbjct: 355 EAI 357
>gi|356536322|ref|XP_003536688.1| PREDICTED: putative DNA repair protein RAD23-3-like [Glycine max]
Length = 408
Score = 481 bits (1237), Expect = e-133, Method: Compositional matrix adjust.
Identities = 255/369 (69%), Positives = 288/369 (78%), Gaps = 7/369 (1%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKVFVKTLKGTHFEIEV P+D VS+VKKNIETVQG+DVYPA+QQMLIHQGKVL+D +TLE
Sbjct: 1 MKVFVKTLKGTHFEIEVTPQDTVSEVKKNIETVQGADVYPAAQQMLIHQGKVLRDASTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTS----SAPPTSTQPTTTSQTPA 116
ENKV EN+F+V+ML+KSK S ST S AP+ +A TS S PP S P ++ PA
Sbjct: 61 ENKVVENTFIVIMLSKSKSPSGEGSTTSTAPSTKAPQTSTVPASTPPASVVPQASAPAPA 120
Query: 117 PTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATV 176
P A ++P S P + + SD+YGQAASNLVAGSNLE T+
Sbjct: 121 PAPAATGALPASVTAPISSPSPAPAPTPAPISSGTAVEGSDIYGQAASNLVAGSNLEGTI 180
Query: 177 QQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPP 236
QQILDMGGGSWDR+TV+RALRAAYNNPERAVEYLY+GIPEQ P VA+ A Q NPP
Sbjct: 181 QQILDMGGGSWDRDTVVRALRAAYNNPERAVEYLYTGIPEQAEAPLVAQVPASAQPTNPP 240
Query: 237 AQT-QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSN-AGAGTLDFLRNSQQFQALRTMVQ 294
A Q QP AP ++GPNANPLDLFPQGLPN+GS AGAG+LDFLRNSQQFQALR MVQ
Sbjct: 241 ADAPQTAQP-APVTSAGPNANPLDLFPQGLPNVGSGAAGAGSLDFLRNSQQFQALRAMVQ 299
Query: 295 ANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTV 354
ANPQILQPMLQELGKQNPHLMRLI++HQ DFLRLINEP EG EGN+LGQ+ASAMPQAVTV
Sbjct: 300 ANPQILQPMLQELGKQNPHLMRLIRDHQADFLRLINEPAEGAEGNILGQMASAMPQAVTV 359
Query: 355 TPEEREAIE 363
TPEER+AIE
Sbjct: 360 TPEERQAIE 368
>gi|334185033|ref|NP_001189793.1| putative DNA repair protein RAD23-3 [Arabidopsis thaliana]
gi|332640305|gb|AEE73826.1| putative DNA repair protein RAD23-3 [Arabidopsis thaliana]
Length = 418
Score = 477 bits (1228), Expect = e-132, Method: Compositional matrix adjust.
Identities = 266/396 (67%), Positives = 303/396 (76%), Gaps = 50/396 (12%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+FVKTLKGTHFEIEVKPED V DVKKNIE+VQG+DVYPA++QMLIHQGKVLKD TT+E
Sbjct: 1 MKIFVKTLKGTHFEIEVKPEDSVVDVKKNIESVQGADVYPAAKQMLIHQGKVLKDETTIE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAP--- 117
ENKVAENSF+V+M+ KSK +S+ AS+ SA +QA+ S PP+++QP+ + QTPA
Sbjct: 61 ENKVAENSFIVIMMNKSKPASAAASSASAG-TSQAK---SIPPSTSQPSISPQTPASVSA 116
Query: 118 -------------------------TVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPV 152
TV P +PE P PA + PAP APV
Sbjct: 117 PVAPAPTRPPPPAPTPTPAPVAATETVTTP--IPE-------PVPATISSSTPAPDSAPV 167
Query: 153 SSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYS 212
DVYGQAASNL AGSNLE+T+QQILDMGGG+WDRETV+ ALRAA+NNPERAVEYLY+
Sbjct: 168 GQ-GDVYGQAASNLAAGSNLESTIQQILDMGGGTWDRETVVLALRAAFNNPERAVEYLYT 226
Query: 213 GIPEQTAVPPVARA-SAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSN 271
GIPEQ VPPVAR ++ GQ NPPAQTQ QPAA AP SGPNANPLDLFPQGLPN+G N
Sbjct: 227 GIPEQAEVPPVARPPASAGQPANPPAQTQ--QPAA-APASGPNANPLDLFPQGLPNVGGN 283
Query: 272 AGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINE 331
GAGTLDFLRNSQQFQALR MVQANPQ+LQPMLQELGKQNP+LMRLIQ+HQ DFLRLINE
Sbjct: 284 PGAGTLDFLRNSQQFQALRAMVQANPQVLQPMLQELGKQNPNLMRLIQDHQADFLRLINE 343
Query: 332 PVEGG--EGNVLGQLASAM--PQAVTVTPEEREAIE 363
PVEGG GN+LGQ+A+ M PQA+ VT EEREAIE
Sbjct: 344 PVEGGGESGNLLGQMAAGMPQPQAIQVTHEEREAIE 379
>gi|255636381|gb|ACU18529.1| unknown [Glycine max]
Length = 382
Score = 477 bits (1227), Expect = e-132, Method: Compositional matrix adjust.
Identities = 266/367 (72%), Positives = 286/367 (77%), Gaps = 28/367 (7%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKVFVKTLKGTHFEIEV P D +S+VKKNIETVQG+DVYPA+QQMLIHQGKVLKD TTLE
Sbjct: 1 MKVFVKTLKGTHFEIEVNPSDTLSEVKKNIETVQGADVYPAAQQMLIHQGKVLKDGTTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKVAE+SF+V+ML+K SA PTST +T Q PA T A
Sbjct: 61 ENKVAESSFIVIMLSKP----------------------SATPTSTSVSTAPQAPASTGA 98
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSV--SDVYGQAASNLVAGSNLEATVQQ 178
V PA APAPAPAP + SSV SD+YGQAASNLVAGSNLE T+QQ
Sbjct: 99 SATPVTAPTAAPAPAPAPAAPAPAPAPIFSG-SSVPESDIYGQAASNLVAGSNLEGTIQQ 157
Query: 179 ILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQ 238
ILDMGGGSWDR+TV+R LRAAYNNPERAVEYLYSGIPEQ PV A Q NPPA
Sbjct: 158 ILDMGGGSWDRDTVVRTLRAAYNNPERAVEYLYSGIPEQAEALPVTGVPASAQPSNPPAD 217
Query: 239 T-QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSN-AGAGTLDFLRNSQQFQALRTMVQAN 296
T QA QPA+ P+SGPNANPLDLFPQGLPN+GS AGAG+LDFLRNSQQFQALR MVQAN
Sbjct: 218 TPQAAQPAS-VPSSGPNANPLDLFPQGLPNVGSGAAGAGSLDFLRNSQQFQALRAMVQAN 276
Query: 297 PQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTP 356
PQILQPMLQELGKQNPHLMRLIQEHQ DFLRLINEPVEGGEGN+LGQLA AMPQAVTVTP
Sbjct: 277 PQILQPMLQELGKQNPHLMRLIQEHQVDFLRLINEPVEGGEGNILGQLAGAMPQAVTVTP 336
Query: 357 EEREAIE 363
EER+AIE
Sbjct: 337 EERQAIE 343
>gi|77745475|gb|ABB02636.1| RAD23-like [Solanum tuberosum]
Length = 384
Score = 473 bits (1217), Expect = e-131, Method: Compositional matrix adjust.
Identities = 271/363 (74%), Positives = 296/363 (81%), Gaps = 18/363 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+FVKTLKGTHFEIEVKPED V+DVKK+IETVQG DVYPA+QQMLIHQ KVLKD TTL+
Sbjct: 1 MKIFVKTLKGTHFEIEVKPEDTVADVKKSIETVQGQDVYPAAQQMLIHQVKVLKDPTTLD 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKVAENSFVV+ML+K+KVS+SG S AP+N S QP T++ P TVA
Sbjct: 61 ENKVAENSFVVIMLSKNKVSTSGTSATQPAPSN-----------SAQPATSTGQPTQTVA 109
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P + AP +APAPAPAPAPAPAPAPA + ++DVYGQAASNLVAGS LE TVQQIL
Sbjct: 110 PQATAASVAPAQSAPAPAPAPAPAPAPAPAAANPLTDVYGQAASNLVAGSTLETTVQQIL 169
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
DMGGGSW+R+TV+RALRAAYNNPERA+EYLYSGIPEQ +PP A S GQA NPP Q
Sbjct: 170 DMGGGSWERDTVVRALRAAYNNPERAIEYLYSGIPEQAEIPPAAPVS--GQAVNPP--VQ 225
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQIL 300
A PA P+ GPNANPLDLFPQGLPN+GSN GAG LDFL NS QFQALR MVQANPQIL
Sbjct: 226 ASPPA--VPSGGPNANPLDLFPQGLPNVGSNVGAGNLDFLSNSPQFQALRAMVQANPQIL 283
Query: 301 QPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEERE 360
QPMLQELGKQNP LMRLIQEHQ DFLRLINEPVE GEGNV GQ A A+PQAVTVTPEERE
Sbjct: 284 QPMLQELGKQNPQLMRLIQEHQADFLRLINEPVE-GEGNVPGQPAGAIPQAVTVTPEERE 342
Query: 361 AIE 363
AIE
Sbjct: 343 AIE 345
>gi|225452019|ref|XP_002283661.1| PREDICTED: putative DNA repair protein RAD23-3 isoform 2 [Vitis
vinifera]
Length = 361
Score = 471 bits (1213), Expect = e-130, Method: Compositional matrix adjust.
Identities = 252/363 (69%), Positives = 281/363 (77%), Gaps = 41/363 (11%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+FVKTLKGTHFEIEVKPED V+DVKKNIE V G+DVYPA+QQMLIHQGKVLKD TTL+
Sbjct: 1 MKIFVKTLKGTHFEIEVKPEDTVADVKKNIELVHGTDVYPAAQQMLIHQGKVLKDATTLD 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
EN+VAE+SFVV+ML+K+KVS+ GAST SAAP +QAQ SS+PPTS QP+T Q AP VA
Sbjct: 61 ENQVAESSFVVIMLSKNKVSAGGASTTSAAPTSQAQPVSSSPPTSNQPSTAPQ--APVVA 118
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P+ +PE PAPA AP+ +SS SD+YGQAASNLVAG+NLE T+QQIL
Sbjct: 119 LPEVIPE-------PAPAVAPS---------ISSDSDIYGQAASNLVAGNNLEVTIQQIL 162
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
DMGGGSWDR+TV+RALRAAYNNPERAVEYLYSGIPEQ PP AR A G A N P Q
Sbjct: 163 DMGGGSWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEGPPAARPPASGLAVNLPTQA- 221
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQIL 300
Q P +SGPNANPLDLFPQGLP+MGSNA AGTLDFLRNS
Sbjct: 222 PQGPQTTVASSGPNANPLDLFPQGLPSMGSNASAGTLDFLRNSP---------------- 265
Query: 301 QPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEERE 360
QELGKQNPHLMRLIQEHQ DFLRLINEPVE GEGNVLGQL + +PQAVT+TPEERE
Sbjct: 266 ----QELGKQNPHLMRLIQEHQADFLRLINEPVE-GEGNVLGQLGT-VPQAVTITPEERE 319
Query: 361 AIE 363
+IE
Sbjct: 320 SIE 322
>gi|356575536|ref|XP_003555896.1| PREDICTED: putative DNA repair protein RAD23-3-like isoform 2
[Glycine max]
Length = 399
Score = 471 bits (1212), Expect = e-130, Method: Compositional matrix adjust.
Identities = 247/364 (67%), Positives = 281/364 (77%), Gaps = 6/364 (1%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKVFVKTLKGTHFEIEV P+D VS+VKKNIETVQG+DVYPA+QQMLIHQGKVL+D TTLE
Sbjct: 1 MKVFVKTLKGTHFEIEVTPQDTVSEVKKNIETVQGADVYPAAQQMLIHQGKVLRDATTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKVAEN+F+V+ML+KSK +S ST S A + +A TS+ P ++ P + AP A
Sbjct: 61 ENKVAENTFIVIMLSKSKSTSGEGSTTSTALSTKAPQTSTVPAST--PPVSVAPQAPAPA 118
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
++P S P + + SD+YGQAASNLVAGSNLE T+QQIL
Sbjct: 119 ATGALPASVTAPVSSPSPAPAPAPAPISSGTAVEGSDIYGQAASNLVAGSNLEGTIQQIL 178
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT- 239
DMGGGSWDR+TV+RALRAAYNNPERAVEYLY+GIPEQ P VARA Q NPPA
Sbjct: 179 DMGGGSWDRDTVVRALRAAYNNPERAVEYLYTGIPEQAEAPLVARAPVSAQPTNPPADAP 238
Query: 240 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQI 299
Q QPAA ++GPNANPLDLFPQ + AGAG+LDFLRNSQQFQALR MVQANPQI
Sbjct: 239 QTAQPAA-VTSAGPNANPLDLFPQ--VAISGAAGAGSLDFLRNSQQFQALRAMVQANPQI 295
Query: 300 LQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEER 359
LQPMLQELGKQNPHLMRLI++HQ DFLRLINEP EGGEGN+LGQ+AS MPQAVTVTPEER
Sbjct: 296 LQPMLQELGKQNPHLMRLIRDHQADFLRLINEPAEGGEGNILGQMASGMPQAVTVTPEER 355
Query: 360 EAIE 363
+AIE
Sbjct: 356 QAIE 359
>gi|77999269|gb|ABB16981.1| unknown [Solanum tuberosum]
Length = 382
Score = 471 bits (1211), Expect = e-130, Method: Compositional matrix adjust.
Identities = 271/363 (74%), Positives = 296/363 (81%), Gaps = 20/363 (5%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+FVKTLKGTHFEIEVKPED V+DVKK+IETVQG DVYPA+QQMLI GKVLKD TTLE
Sbjct: 1 MKIFVKTLKGTHFEIEVKPEDTVADVKKSIETVQGQDVYPAAQQMLIPPGKVLKDPTTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKVAENSFVV+ML+K+KVS+SG S AP+N S QP T++ P TVA
Sbjct: 61 ENKVAENSFVVIMLSKNKVSTSGTSATQPAPSN-----------SAQPATSTGQPTQTVA 109
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P + ++ PA APAPAPAPAPAPAPA + ++DVYGQAASNLVAGS LE TVQQIL
Sbjct: 110 PQATA--ASVAPAQSAPAPAPAPAPAPAPAAANPLTDVYGQAASNLVAGSTLETTVQQIL 167
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
DMGGGSW+R+TV+RALRAAYNNPERA+EYLYSGIPEQ +PP A AS GQA NPP Q
Sbjct: 168 DMGGGSWERDTVVRALRAAYNNPERAIEYLYSGIPEQAEIPPAAPAS--GQAVNPP--VQ 223
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQIL 300
A QPA P+ GPNANPLDLFPQGLPN+GSN GAG LDFL NS QFQALR MVQANPQIL
Sbjct: 224 ASQPA--VPSGGPNANPLDLFPQGLPNVGSNVGAGNLDFLSNSPQFQALRAMVQANPQIL 281
Query: 301 QPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEERE 360
QPMLQELGKQNP LMRLIQEHQ DFLRLINEPVE GEGNV GQ A A+PQAVTVTPEERE
Sbjct: 282 QPMLQELGKQNPQLMRLIQEHQADFLRLINEPVE-GEGNVPGQPAGAIPQAVTVTPEERE 340
Query: 361 AIE 363
AIE
Sbjct: 341 AIE 343
>gi|356575538|ref|XP_003555897.1| PREDICTED: putative DNA repair protein RAD23-3-like isoform 3
[Glycine max]
Length = 381
Score = 467 bits (1201), Expect = e-129, Method: Compositional matrix adjust.
Identities = 246/365 (67%), Positives = 274/365 (75%), Gaps = 26/365 (7%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKVFVKTLKGTHFEIEV P+D VS+VKKNIETVQG+DVYPA+QQMLIHQGKVL+D TTLE
Sbjct: 1 MKVFVKTLKGTHFEIEVTPQDTVSEVKKNIETVQGADVYPAAQQMLIHQGKVLRDATTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKVAEN+F+V+ML+K+ STV A S PP S P + +
Sbjct: 61 ENKVAENTFIVIMLSKT-------STVPA----------STPPVSVAPQAPAPAATGALP 103
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
S P + + SD+YGQAASNLVAGSNLE T+QQIL
Sbjct: 104 ------ASVTAPVSSPSPAPAPAPAPISSGTAVEGSDIYGQAASNLVAGSNLEGTIQQIL 157
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT- 239
DMGGGSWDR+TV+RALRAAYNNPERAVEYLY+GIPEQ P VARA Q NPPA
Sbjct: 158 DMGGGSWDRDTVVRALRAAYNNPERAVEYLYTGIPEQAEAPLVARAPVSAQPTNPPADAP 217
Query: 240 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSN-AGAGTLDFLRNSQQFQALRTMVQANPQ 298
Q QPAA ++GPNANPLDLFPQGLPN+GS AGAG+LDFLRNSQQFQALR MVQANPQ
Sbjct: 218 QTAQPAA-VTSAGPNANPLDLFPQGLPNVGSGAAGAGSLDFLRNSQQFQALRAMVQANPQ 276
Query: 299 ILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEE 358
ILQPMLQELGKQNPHLMRLI++HQ DFLRLINEP EGGEGN+LGQ+AS MPQAVTVTPEE
Sbjct: 277 ILQPMLQELGKQNPHLMRLIRDHQADFLRLINEPAEGGEGNILGQMASGMPQAVTVTPEE 336
Query: 359 REAIE 363
R+AIE
Sbjct: 337 RQAIE 341
>gi|90657579|gb|ABD96879.1| hypothetical protein [Cleome spinosa]
Length = 383
Score = 466 bits (1199), Expect = e-129, Method: Compositional matrix adjust.
Identities = 259/367 (70%), Positives = 287/367 (78%), Gaps = 27/367 (7%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+FVKTLKGTHFEIEVKPED V+DVKKNIETVQG+DVYP++QQMLIHQGKVL+D TT+E
Sbjct: 1 MKIFVKTLKGTHFEIEVKPEDTVADVKKNIETVQGADVYPSAQQMLIHQGKVLRDETTME 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAA--PANQAQTTSSAPPTSTQPTTTSQTPAPT 118
ENKVAE SF+V+ML+KS +S + +A+ P QA AP STQP+T+ QTPAP
Sbjct: 61 ENKVAEKSFIVIMLSKSSKPASSSGASTASAAPTTQA---PPAPLASTQPSTSPQTPAPV 117
Query: 119 VAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQ 178
A A V+ +D+YGQAASNLVAGSNLEAT+QQ
Sbjct: 118 -----------------AMPQAAPETAPAPAPAVTQ-TDIYGQAASNLVAGSNLEATIQQ 159
Query: 179 ILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARA-SAGGQAGNPPA 237
ILDMGGGSWDR+TV+RALRAAYNNPERAVEYLYSGIPEQ VPPVA+A ++GGQ N
Sbjct: 160 ILDMGGGSWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVPPVAQAPASGGQPTN--P 217
Query: 238 QTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANP 297
QA Q A APTSGPNANPLDLFPQGLPN+GSN GAGTLDFLRNSQQFQALR MVQANP
Sbjct: 218 PAQAGQQPAAAPTSGPNANPLDLFPQGLPNVGSNTGAGTLDFLRNSQQFQALRAMVQANP 277
Query: 298 QILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGE-GNVLGQLASAMPQAVTVTP 356
QILQPMLQELGKQNP LMRLIQEHQ DFLRLINEPVEGGE GN+ QL AMPQA+ VTP
Sbjct: 278 QILQPMLQELGKQNPQLMRLIQEHQADFLRLINEPVEGGEGGNISSQLGGAMPQAIQVTP 337
Query: 357 EEREAIE 363
EEREAIE
Sbjct: 338 EEREAIE 344
>gi|255576447|ref|XP_002529115.1| uv excision repair protein rad23, putative [Ricinus communis]
gi|223531394|gb|EEF33228.1| uv excision repair protein rad23, putative [Ricinus communis]
Length = 409
Score = 447 bits (1149), Expect = e-123, Method: Compositional matrix adjust.
Identities = 270/385 (70%), Positives = 299/385 (77%), Gaps = 37/385 (9%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+FVKTLKGT F++EVKPED ++DVKK+IET QG+DVYPA QQMLI+QGKVLKD TT++
Sbjct: 1 MKIFVKTLKGTTFDVEVKPEDTIADVKKSIETTQGADVYPAGQQMLIYQGKVLKDNTTID 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKVAENSFVV+MLTK+K S+ ST S A +T+ AP T PA T+A
Sbjct: 61 ENKVAENSFVVIMLTKNKSSTGEGSTASTA------STTKAPQTII--------PA-TIA 105
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSV-----------------SDVYGQAA 163
PP VP SA P APAP PA APAPA APAP + DVYGQAA
Sbjct: 106 PPAPVPTSALPAPAPAPTPAAAPAPAAAPAPAPTPAAAPAPAPAPSAIAAQQGDVYGQAA 165
Query: 164 SNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPV 223
SNLVAG+NLE +QQILDMGGG+WDR+TV+RALRAAYNNPERAVEYLYSGIPEQ VPPV
Sbjct: 166 SNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVPPV 225
Query: 224 ARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNM-----GSNAGAGTLD 278
A S GQA N PAQ Q A P+ GPNANPLDLFPQGLPNM G+ AGAGTLD
Sbjct: 226 APVSLSGQAANQPAQPQQPAQPAAVPSGGPNANPLDLFPQGLPNMGSGGAGAGAGAGTLD 285
Query: 279 FLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEG 338
FLRNSQQFQALR MVQANPQILQPMLQELGKQNP+L+RLIQEHQTDFLRLINEPVEGGEG
Sbjct: 286 FLRNSQQFQALRAMVQANPQILQPMLQELGKQNPNLVRLIQEHQTDFLRLINEPVEGGEG 345
Query: 339 NVLGQLASAMPQAVTVTPEEREAIE 363
N++GQLA+AMPQAVTVTPEEREAIE
Sbjct: 346 NIMGQLAAAMPQAVTVTPEEREAIE 370
>gi|224111696|ref|XP_002315945.1| predicted protein [Populus trichocarpa]
gi|222864985|gb|EEF02116.1| predicted protein [Populus trichocarpa]
Length = 378
Score = 444 bits (1142), Expect = e-122, Method: Compositional matrix adjust.
Identities = 258/366 (70%), Positives = 277/366 (75%), Gaps = 30/366 (8%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+FVKTLKG+ F+IEVKP D V+DVKKNIET QG+ VYPA QQMLI+QGKVLKD TTL
Sbjct: 1 MKIFVKTLKGSTFDIEVKPGDTVADVKKNIETAQGASVYPAEQQMLIYQGKVLKDDTTLG 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKVAENSFVV+ML+K+K SS ST SAAP P T PT
Sbjct: 61 ENKVAENSFVVIMLSKAKSSSGEGSTTSAAPT---------PKVITLPT----------- 100
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
SVP S P APAPAPAP + + S VYGQAASNLVAG+NLE VQQIL
Sbjct: 101 ---SVP-SPAPAPAPAPAPAPRSGFCSSSSSGFFKSGVYGQAASNLVAGNNLEGAVQQIL 156
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
DMGGGSWDR+TV+RALRAAYNNPERAVEYLY+GIPEQ PPVA+ QA PA
Sbjct: 157 DMGGGSWDRDTVVRALRAAYNNPERAVEYLYTGIPEQAEAPPVAQVPVSEQA---PAAQP 213
Query: 241 AQQPAAP--APTSGPNANPLDLFPQGLPNMGSNAG-AGTLDFLRNSQQFQALRTMVQANP 297
QQPA P P GPNANPLDLFPQGLPN+GS A AGTLDFLRNSQQFQALR MVQANP
Sbjct: 214 RQQPAQPTTVPAGGPNANPLDLFPQGLPNIGSGAAEAGTLDFLRNSQQFQALRAMVQANP 273
Query: 298 QILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPE 357
QILQPMLQELGKQNPHLMRLIQEHQ DFLRLINEPVEGGEGNV G LA+AMPQ+VTVTPE
Sbjct: 274 QILQPMLQELGKQNPHLMRLIQEHQDDFLRLINEPVEGGEGNVSGPLAAAMPQSVTVTPE 333
Query: 358 EREAIE 363
EREAIE
Sbjct: 334 EREAIE 339
>gi|449530301|ref|XP_004172134.1| PREDICTED: putative DNA repair protein RAD23-3-like [Cucumis
sativus]
Length = 407
Score = 441 bits (1134), Expect = e-121, Method: Compositional matrix adjust.
Identities = 261/382 (68%), Positives = 300/382 (78%), Gaps = 23/382 (6%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+FVKTLKG+HFEIEV+P D V+DVKKNIETVQG+DVYPA+QQMLIHQGKVLKD +TLE
Sbjct: 1 MKIFVKTLKGSHFEIEVQPADTVADVKKNIETVQGADVYPAAQQMLIHQGKVLKDSSTLE 60
Query: 61 ENKVAENSFVVVMLTKSK-VSSSGASTVSAAPANQA-QTTSSAPPTSTQPTTTSQTPAPT 118
ENKVAENSF+V+MLTK+K S +ST AAP +A Q+T+ AP + P +T++ P PT
Sbjct: 61 ENKVAENSFIVIMLTKNKSSSGGTSSTTHAAPVAKAPQSTAPAPAAT--PVSTTEVPLPT 118
Query: 119 VAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSV---------------SDVYGQAA 163
APP SV S+PP +P P P PAPAPAP P P + +DVY QAA
Sbjct: 119 SAPPASVTASSPPAPSPTPVPVPAPAPAPTPTPTPTPAAAPAPSLATTVLPDADVYSQAA 178
Query: 164 SNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPV 223
SNLVAGSNLE TVQQILDMG G WDR+TV+RALRAAYNNPERAV+YLYSGIPEQ PP
Sbjct: 179 SNLVAGSNLEETVQQILDMGEGVWDRDTVVRALRAAYNNPERAVDYLYSGIPEQVEAPP- 237
Query: 224 ARASAGGQAGN-PPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNA-GAGTLDFLR 281
AR + QA N Q QPA+ ++GPNANPLDLFPQGLPN+GS A G+G+LDFLR
Sbjct: 238 ARVPSTVQASNPSAQPAQPAQPASAPSSTGPNANPLDLFPQGLPNLGSGAVGSGSLDFLR 297
Query: 282 NSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVL 341
NS QFQALR MV+ANPQILQPMLQELGKQNP L+RLIQ+HQ DFLRLINEP+E GEGN+L
Sbjct: 298 NSPQFQALRAMVRANPQILQPMLQELGKQNPQLIRLIQDHQPDFLRLINEPLE-GEGNIL 356
Query: 342 GQLASAMPQAVTVTPEEREAIE 363
GQLA AMPQA+TVTPEEREAI+
Sbjct: 357 GQLAEAMPQAITVTPEEREAIQ 378
>gi|449434628|ref|XP_004135098.1| PREDICTED: putative DNA repair protein RAD23-3-like [Cucumis
sativus]
Length = 407
Score = 441 bits (1134), Expect = e-121, Method: Compositional matrix adjust.
Identities = 261/382 (68%), Positives = 300/382 (78%), Gaps = 23/382 (6%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+FVKTLKG+HFEIEV+P D V+DVKKNIETVQG+DVYPA+QQMLIHQGKVLKD +TLE
Sbjct: 1 MKIFVKTLKGSHFEIEVQPADTVADVKKNIETVQGADVYPAAQQMLIHQGKVLKDSSTLE 60
Query: 61 ENKVAENSFVVVMLTKSK-VSSSGASTVSAAPANQA-QTTSSAPPTSTQPTTTSQTPAPT 118
ENKVAENSF+V+MLTK+K S +ST AAP +A Q+T+ AP + P +T++ P PT
Sbjct: 61 ENKVAENSFIVIMLTKNKSSSGGTSSTTHAAPVAKAPQSTAPAPAAT--PVSTTEVPLPT 118
Query: 119 VAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSV---------------SDVYGQAA 163
APP SV S+PP +P P P PAPAPAP P P + +DVY QAA
Sbjct: 119 SAPPASVTASSPPAPSPTPVPVPAPAPAPTPTPTPTPAAAPAPSLATTVLPDADVYSQAA 178
Query: 164 SNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPV 223
SNLVAGSNLE TVQQILDMG G WDR+TV+RALRAAYNNPERAV+YLYSGIPEQ PP
Sbjct: 179 SNLVAGSNLEETVQQILDMGEGVWDRDTVVRALRAAYNNPERAVDYLYSGIPEQVEAPP- 237
Query: 224 ARASAGGQAGN-PPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNA-GAGTLDFLR 281
AR + QA N Q QPA+ ++GPNANPLDLFPQGLPN+GS A G+G+LDFLR
Sbjct: 238 ARVPSTVQASNPSAQPAQPAQPASAPSSTGPNANPLDLFPQGLPNLGSGAVGSGSLDFLR 297
Query: 282 NSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVL 341
NS QFQALR MV+ANPQILQPMLQELGKQNP L+RLIQ+HQ DFLRLINEP+E GEGN+L
Sbjct: 298 NSPQFQALRAMVRANPQILQPMLQELGKQNPQLIRLIQDHQPDFLRLINEPLE-GEGNIL 356
Query: 342 GQLASAMPQAVTVTPEEREAIE 363
GQLA AMPQA+TVTPEEREAI+
Sbjct: 357 GQLAEAMPQAITVTPEEREAIQ 378
>gi|15240922|ref|NP_198663.1| putative DNA repair protein RAD23-4 [Arabidopsis thaliana]
gi|55976502|sp|Q84L30.2|RD23D_ARATH RecName: Full=Putative DNA repair protein RAD23-4; AltName:
Full=RAD23-like protein 4; Short=AtRAD23-4
gi|9758825|dbj|BAB09359.1| DNA repair protein RAD23 homolog [Arabidopsis thaliana]
gi|16648838|gb|AAL25609.1| unknown protein [Arabidopsis thaliana]
gi|19548081|gb|AAL87405.1| At5g38470/At5g38470 [Arabidopsis thaliana]
gi|21593157|gb|AAM65106.1| DNA repair protein RAD23 homolog [Arabidopsis thaliana]
gi|30409728|dbj|BAC76394.1| RAD23-like protein [Arabidopsis thaliana]
gi|110735094|gb|ABG89117.1| Rad23-2 [synthetic construct]
gi|332006938|gb|AED94321.1| putative DNA repair protein RAD23-4 [Arabidopsis thaliana]
Length = 378
Score = 436 bits (1122), Expect = e-120, Method: Compositional matrix adjust.
Identities = 248/364 (68%), Positives = 278/364 (76%), Gaps = 27/364 (7%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+FVKTL G++FEIEVKP DKVSDVK IETV+G++ YPA++QMLIHQGKVLKD TTLE
Sbjct: 1 MKIFVKTLSGSNFEIEVKPADKVSDVKTAIETVKGAE-YPAAKQMLIHQGKVLKDETTLE 59
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
EN V ENSF+V+ML+K+K S SGAST SA PA P++TQP T VA
Sbjct: 60 ENNVVENSFIVIMLSKTKASPSGASTASA-PA----------PSATQPQT--------VA 100
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSV-SDVYGQAASNLVAGSNLEATVQQI 179
PQ P A P P A A APA +SV +DVYGQAASNLVAG+ LE+TVQQI
Sbjct: 101 TPQ-----VSAPTASVPVPTSGTATAAAPATAASVQTDVYGQAASNLVAGTTLESTVQQI 155
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 239
LDMGGGSWDR+TV+RALRAA+NNPERAVEYLYSGIP Q +PPVA+A A G+ P
Sbjct: 156 LDMGGGSWDRDTVVRALRAAFNNPERAVEYLYSGIPAQAEIPPVAQAPATGEQAANPLAQ 215
Query: 240 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQI 299
Q A A T GPNANPL+LFPQG+P + AGAG LDFLRNSQQFQALR MVQANPQI
Sbjct: 216 PQQAAAPAAATGGPNANPLNLFPQGMPAADAGAGAGNLDFLRNSQQFQALRAMVQANPQI 275
Query: 300 LQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEER 359
LQPMLQELGKQNP L+RLIQEHQ DFLRLINEPVE GE NV+ QL +AMPQAVTVTPEER
Sbjct: 276 LQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVE-GEENVMEQLEAAMPQAVTVTPEER 334
Query: 360 EAIE 363
EAIE
Sbjct: 335 EAIE 338
>gi|14335004|gb|AAK59766.1| unknown protein [Arabidopsis thaliana]
Length = 378
Score = 435 bits (1118), Expect = e-119, Method: Compositional matrix adjust.
Identities = 247/364 (67%), Positives = 277/364 (76%), Gaps = 27/364 (7%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+FVKTL G++FEIEVKP DKVSDVK IETV+G++ YPA++QMLIHQGKVLKD TTLE
Sbjct: 1 MKIFVKTLSGSNFEIEVKPADKVSDVKTAIETVKGAE-YPAAKQMLIHQGKVLKDETTLE 59
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
EN V ENSF+V+ML+K+K S SGAST SA PA P++TQP T VA
Sbjct: 60 ENNVVENSFIVIMLSKTKASPSGASTASA-PA----------PSATQPQT--------VA 100
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSV-SDVYGQAASNLVAGSNLEATVQQI 179
PQ P A P P A A APA +SV +DVYGQAASNLVAG+ LE+TVQQI
Sbjct: 101 TPQ-----VSAPTASVPVPTSGTATAAAPATAASVQTDVYGQAASNLVAGTTLESTVQQI 155
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 239
LDMGGGSWDR+TV+RALRAA+NNPERAVEYLYSGIP Q +PPVA+A A G+ P
Sbjct: 156 LDMGGGSWDRDTVVRALRAAFNNPERAVEYLYSGIPAQAEIPPVAQAPATGEQAANPLAQ 215
Query: 240 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQI 299
Q A A T GPNANPL+LFPQG+P + AGAG LDFLRNS QFQALR MVQANPQI
Sbjct: 216 PQQAAAPAAATGGPNANPLNLFPQGMPAADAGAGAGNLDFLRNSHQFQALRAMVQANPQI 275
Query: 300 LQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEER 359
LQPMLQELGKQNP L+RLIQEHQ DFLRLINEPVE GE NV+ QL +AMPQAVTVTPEER
Sbjct: 276 LQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVE-GEENVMEQLEAAMPQAVTVTPEER 334
Query: 360 EAIE 363
EAIE
Sbjct: 335 EAIE 338
>gi|297805910|ref|XP_002870839.1| hypothetical protein ARALYDRAFT_494129 [Arabidopsis lyrata subsp.
lyrata]
gi|297316675|gb|EFH47098.1| hypothetical protein ARALYDRAFT_494129 [Arabidopsis lyrata subsp.
lyrata]
Length = 377
Score = 414 bits (1064), Expect = e-113, Method: Compositional matrix adjust.
Identities = 248/363 (68%), Positives = 279/363 (76%), Gaps = 26/363 (7%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+FVKTL GT+FEIEVKP D VSDVKK IETV+G++ YPA +QMLIHQGKVLKD TTLE
Sbjct: 1 MKIFVKTLSGTNFEIEVKPADTVSDVKKAIETVKGAE-YPAVKQMLIHQGKVLKDETTLE 59
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
EN V ENSF+V+ML+K+KVSSSGAST S+ P++TQ A TVA
Sbjct: 60 ENNVVENSFIVIMLSKTKVSSSGAST-----------ASAPAPSATQ--------AQTVA 100
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
PQ SAP + P P A A APA A +DVYGQAASNLVAG+ LE+TVQQIL
Sbjct: 101 TPQV---SAPTVSVPEPTSGTATAAAPAAAAAVQ-TDVYGQAASNLVAGTTLESTVQQIL 156
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
DMGGGSWDR+TV+RALRAA+NNPERAVEYLYSGIP Q +PPVA+A + G+ Q Q
Sbjct: 157 DMGGGSWDRDTVVRALRAAFNNPERAVEYLYSGIPAQAEIPPVAQAPSTGEQP-ANPQAQ 215
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQIL 300
QQ A A T GPNANPL+LFPQG+P + AGAG LDFLRNSQ+FQALR MVQANPQIL
Sbjct: 216 PQQAAPVAATGGPNANPLNLFPQGMPAADAAAGAGNLDFLRNSQKFQALRAMVQANPQIL 275
Query: 301 QPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEERE 360
QPMLQELGKQNP L+RLIQEHQ DFLRLINEPVE GE NV+ QL +AMPQAVTVTPEERE
Sbjct: 276 QPMLQELGKQNPQLVRLIQEHQADFLRLINEPVE-GEENVMEQLEAAMPQAVTVTPEERE 334
Query: 361 AIE 363
AIE
Sbjct: 335 AIE 337
>gi|1914683|emb|CAA72741.1| RAD23, isoform I [Daucus carota]
Length = 382
Score = 406 bits (1044), Expect = e-111, Method: Compositional matrix adjust.
Identities = 232/364 (63%), Positives = 267/364 (73%), Gaps = 21/364 (5%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK++VKTLKG+ FEI+V P+D V+DVK++IET QG+ VYPA+QQMLI+QGKVLKD TTL
Sbjct: 1 MKIYVKTLKGSQFEIQVNPDDSVADVKRSIETAQGAAVYPAAQQMLIYQGKVLKDGTTLL 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
EN VAENSF+V+ML+KSK S ST S A A +A T SAPP+ PAP V
Sbjct: 61 ENNVAENSFIVIMLSKSKSPSGEGSTTSTAAAPKAPQT-SAPPS---------VPAPAV- 109
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
S P ++ P A V S ++VY AAS LVAGSNLE +QQIL
Sbjct: 110 ---SQPPASTLPVPAPSPAPAPATAPIPSAAVGSEANVYDSAASLLVAGSNLEGAIQQIL 166
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
DMGGG+WDR+TVIR +RAA+NNPERAVEYLYSGIPEQ PPVA + GQA NP Q
Sbjct: 167 DMGGGTWDRDTVIRIVRAAFNNPERAVEYLYSGIPEQAEAPPVAPSPPSGQAANPLDQPP 226
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSN-AGAGTLDFLRNSQQFQALRTMVQANPQI 299
A APA PNANPLDLFPQGLP+MGSN AGAG LDFLR +QQFQALR MVQ+NPQI
Sbjct: 227 AAAQPAPASAG-PNANPLDLFPQGLPDMGSNAAGAGNLDFLRTNQQFQALRAMVQSNPQI 285
Query: 300 LQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEER 359
LQPMLQELGKQNPHLMRLIQEHQ DFL+LINEP+EGGE N+LG PQA++VTPEER
Sbjct: 286 LQPMLQELGKQNPHLMRLIQEHQADFLQLINEPMEGGE-NLLGH----GPQAISVTPEER 340
Query: 360 EAIE 363
+AIE
Sbjct: 341 DAIE 344
>gi|145334669|ref|NP_001078680.1| putative DNA repair protein RAD23-4 [Arabidopsis thaliana]
gi|332006939|gb|AED94322.1| putative DNA repair protein RAD23-4 [Arabidopsis thaliana]
Length = 332
Score = 405 bits (1040), Expect = e-110, Method: Compositional matrix adjust.
Identities = 229/348 (65%), Positives = 259/348 (74%), Gaps = 26/348 (7%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+FVKTL G++FEIEVKP DKVSDVK IETV+G++ YPA++QMLIHQGKVLKD TTLE
Sbjct: 1 MKIFVKTLSGSNFEIEVKPADKVSDVKTAIETVKGAE-YPAAKQMLIHQGKVLKDETTLE 59
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
EN V ENSF+V+ML+K+K S SGAST SA PA P++TQP T VA
Sbjct: 60 ENNVVENSFIVIMLSKTKASPSGASTASA-PA----------PSATQPQT--------VA 100
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSV-SDVYGQAASNLVAGSNLEATVQQI 179
PQ P A P P A A APA +SV +DVYGQAASNLVAG+ LE+TVQQI
Sbjct: 101 TPQ-----VSAPTASVPVPTSGTATAAAPATAASVQTDVYGQAASNLVAGTTLESTVQQI 155
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 239
LDMGGGSWDR+TV+RALRAA+NNPERAVEYLYSGIP Q +PPVA+A A G+ P
Sbjct: 156 LDMGGGSWDRDTVVRALRAAFNNPERAVEYLYSGIPAQAEIPPVAQAPATGEQAANPLAQ 215
Query: 240 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQI 299
Q A A T GPNANPL+LFPQG+P + AGAG LDFLRNSQQFQALR MVQANPQI
Sbjct: 216 PQQAAAPAAATGGPNANPLNLFPQGMPAADAGAGAGNLDFLRNSQQFQALRAMVQANPQI 275
Query: 300 LQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASA 347
LQPMLQELGKQNP L+RLIQEHQ DFLRLINEPVEG E G + S+
Sbjct: 276 LQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVEGEEWECYGTVGSS 323
>gi|388499022|gb|AFK37577.1| unknown [Lotus japonicus]
Length = 376
Score = 405 bits (1040), Expect = e-110, Method: Compositional matrix adjust.
Identities = 236/364 (64%), Positives = 269/364 (73%), Gaps = 28/364 (7%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKGTHF+I+V +D V+DVKK IE QG+ VYPA+QQMLIHQGKVLKD TTLE
Sbjct: 1 MKINVKTLKGTHFQIQVNLQDSVADVKKTIEVAQGAGVYPAAQQMLIHQGKVLKDDTTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
EN VAE+SFVV+ML+K+KVSSSGAST +AA ++ P S+ P T+S PT A
Sbjct: 61 ENNVAEDSFVVIMLSKNKVSSSGASTAAAA---PPNPVTAPQPASSVPPTSSTPEPPTSA 117
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
Q S P P A VS VYGQAASNL+AGSN++ TVQQIL
Sbjct: 118 VGQGASNSEQSPVITPPTAA--------------VSSVYGQAASNLIAGSNVDPTVQQIL 163
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
+MGGGSWDR+TVIRALRAAYNNPERAVEYLYSGIPEQ VP VAR+ + GQA NP +
Sbjct: 164 EMGGGSWDRDTVIRALRAAYNNPERAVEYLYSGIPEQADVPAVARSPSVGQAENPSVR-- 221
Query: 241 AQQPAAPA-PTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQI 299
P PA PT GPN NPL+LFPQG+PNMG+ AG LDFLRN+QQFQALR MVQANPQI
Sbjct: 222 ---PPQPAVPTGGPNTNPLNLFPQGIPNMGAEDNAGDLDFLRNNQQFQALRAMVQANPQI 278
Query: 300 LQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEER 359
LQPMLQELGKQNPHLM+LIQEHQ+DFL LINEP EG E LA+ M QA+TVTPEE
Sbjct: 279 LQPMLQELGKQNPHLMQLIQEHQSDFLNLINEP-EGEE----NPLAAGMTQAITVTPEED 333
Query: 360 EAIE 363
EAI+
Sbjct: 334 EAIQ 337
>gi|116787088|gb|ABK24371.1| unknown [Picea sitchensis]
Length = 390
Score = 398 bits (1023), Expect = e-108, Method: Compositional matrix adjust.
Identities = 214/370 (57%), Positives = 261/370 (70%), Gaps = 26/370 (7%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG FEI+ +P D V VKK IE +QG D YP QQ+LIHQGKVLKD TT+E
Sbjct: 1 MKLSVKTLKGNRFEIDAQPNDTVMAVKKQIEEIQGKDTYPCGQQLLIHQGKVLKDDTTIE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+N++ EN F+VVMLTK+K SS+ ++ +++ + T +S P +A
Sbjct: 61 DNQITENGFLVVMLTKTKTSSAAGASSTSSASTIQHTQTSTP----------------LA 104
Query: 121 PPQSVPESAPPPAAPAPAPAPAPA-PAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQI 179
P + E+A P + PA APA + AP V + +D YG+AAS LVAGSNLE T+QQ+
Sbjct: 105 PASNPVEAASPVVSQPPAVAPATSVSAPETTAVQANADPYGEAASILVAGSNLEQTIQQM 164
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP-PVARA-----SAGGQAG 233
LDMGGGSWDR+TV+RALRAAYNNPERAVEYLYSGIPE + PVAR+ A GQ
Sbjct: 165 LDMGGGSWDRDTVVRALRAAYNNPERAVEYLYSGIPETAEIAVPVARSPPSNSGAAGQGT 224
Query: 234 NPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMV 293
N ++ A P+ GPNA PL+LFPQGLPN+G+ AG G LDFLRN+ QFQALRTMV
Sbjct: 225 NDVVAAESDLAQATVPSGGPNAAPLNLFPQGLPNLGATAGGGALDFLRNNPQFQALRTMV 284
Query: 294 QANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVT 353
QANPQILQPMLQEL KQNP LMRLIQ+HQ +FL LINE EG++LGQ A+ MPQ++
Sbjct: 285 QANPQILQPMLQELSKQNPQLMRLIQDHQAEFLHLINEET---EGDLLGQFAAEMPQSIN 341
Query: 354 VTPEEREAIE 363
VTPEEREAIE
Sbjct: 342 VTPEEREAIE 351
>gi|115479081|ref|NP_001063134.1| Os09g0407200 [Oryza sativa Japonica Group]
gi|55976306|sp|Q40742.2|RAD23_ORYSJ RecName: Full=Probable DNA repair protein RAD23; AltName:
Full=OsRAD23
gi|51091502|dbj|BAD36240.1| putative RAD23 protein [Oryza sativa Japonica Group]
gi|51091558|dbj|BAD36295.1| putative RAD23 protein [Oryza sativa Japonica Group]
gi|113631367|dbj|BAF25048.1| Os09g0407200 [Oryza sativa Japonica Group]
gi|125563673|gb|EAZ09053.1| hypothetical protein OsI_31314 [Oryza sativa Indica Group]
gi|125605644|gb|EAZ44680.1| hypothetical protein OsJ_29306 [Oryza sativa Japonica Group]
Length = 392
Score = 392 bits (1006), Expect = e-106, Method: Compositional matrix adjust.
Identities = 223/366 (60%), Positives = 264/366 (72%), Gaps = 22/366 (6%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+ F+IEV KV+DVK+ IET QG +YPA QQMLIHQGKVLKD TTL+
Sbjct: 1 MKISVKTLKGSTFQIEVDSAQKVADVKRIIETTQGQHIYPAEQQMLIHQGKVLKDDTTLD 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTT-TSQTPAPTV 119
ENKV ENSF+V+ML + K SSS A S AP+NQ APPT T P SQ P V
Sbjct: 61 ENKVLENSFLVIMLRQGKGSSSSAPATSKAPSNQ------APPTQTVPAAPASQAP---V 111
Query: 120 APPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQI 179
AP +VP + +AP P +PAPA A VSS +D YGQA SNLVAGSNLEAT+Q I
Sbjct: 112 APATTVPVTV---SAPTPTATASPAPAVA---VSSEADNYGQATSNLVAGSNLEATIQSI 165
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 239
L+MGGG WDR+ V+ AL AA+NNPERAVEYLYSG+PEQ + PV S Q NP +
Sbjct: 166 LEMGGGIWDRDIVLHALSAAFNNPERAVEYLYSGVPEQMDI-PVPPPSI--QPANPTQAS 222
Query: 240 QAQQPAAPAP-TSGPNANPLDLFPQGLPNMGSN-AGAGTLDFLRNSQQFQALRTMVQANP 297
QA QPAAP+ +SGPNA+PLDLFPQ LPN ++ AG G LD LRN+ QF+ L ++VQANP
Sbjct: 223 QATQPAAPSILSSGPNASPLDLFPQALPNASTDAAGLGNLDALRNNAQFRTLLSLVQANP 282
Query: 298 QILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEG-GEGNVLGQLASAMPQAVTVTP 356
QILQP+LQELGKQNP +++LIQE+Q +FL LINEP EG E N+L Q AMPQ + VTP
Sbjct: 283 QILQPLLQELGKQNPQILQLIQENQAEFLHLINEPAEGDDEENLLDQFPEAMPQTIAVTP 342
Query: 357 EEREAI 362
EE EAI
Sbjct: 343 EENEAI 348
>gi|1488297|gb|AAB65841.1| osRAD23 [Oryza sativa Japonica Group]
Length = 392
Score = 391 bits (1005), Expect = e-106, Method: Compositional matrix adjust.
Identities = 223/366 (60%), Positives = 264/366 (72%), Gaps = 22/366 (6%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+ F+IEV KV+DVK+ IET QG +YPA QQMLIHQGKVLKD TTL+
Sbjct: 1 MKISVKTLKGSTFQIEVDSAQKVADVKRIIETTQGQHIYPAEQQMLIHQGKVLKDDTTLD 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTT-TSQTPAPTV 119
ENKV ENSF+V+ML + K SSS A S AP+NQ APPT T P SQ P V
Sbjct: 61 ENKVLENSFLVIMLRQGKGSSSSAPATSKAPSNQ------APPTQTVPAAPASQAP---V 111
Query: 120 APPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQI 179
AP +VP + +AP P +PAPA A VSS +D YGQA SNLVAGSNLEAT+Q I
Sbjct: 112 APATTVPVTV---SAPTPTATASPAPAVA---VSSEADNYGQATSNLVAGSNLEATIQSI 165
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 239
L+MGGG WDR+ V+ AL AA+NNPERAVEYLYSG+PEQ + PV S Q NP +
Sbjct: 166 LEMGGGIWDRDIVLHALSAAFNNPERAVEYLYSGVPEQMDI-PVPPPSI--QPANPTQAS 222
Query: 240 QAQQPAAPAP-TSGPNANPLDLFPQGLPNMGSN-AGAGTLDFLRNSQQFQALRTMVQANP 297
QA QPAAP+ +SGPNA+PLDLFPQ LPN ++ AG G LD LRN+ QF+ L ++VQANP
Sbjct: 223 QATQPAAPSILSSGPNASPLDLFPQALPNASTDAAGLGNLDALRNNAQFRTLLSLVQANP 282
Query: 298 QILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEG-GEGNVLGQLASAMPQAVTVTP 356
QILQP+LQELGKQNP +++LIQE+Q +FL LINEP EG E N+L Q AMPQ + VTP
Sbjct: 283 QILQPLLQELGKQNPQILQLIQENQAEFLHLINEPAEGDDEENLLDQFPEAMPQTIAVTP 342
Query: 357 EEREAI 362
EE EAI
Sbjct: 343 EEDEAI 348
>gi|197717669|gb|ACH72675.1| RAD23 [Pinus sylvestris var. mongolica]
Length = 390
Score = 390 bits (1001), Expect = e-106, Method: Compositional matrix adjust.
Identities = 219/370 (59%), Positives = 258/370 (69%), Gaps = 26/370 (7%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG FEIE +P D V VKK IE +QG D YP QQ+LIHQGKVLKD TT+E
Sbjct: 1 MKLSVKTLKGNRFEIEAQPNDTVMAVKKQIEEIQGKDTYPCGQQLLIHQGKVLKDDTTIE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSS-GASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTV 119
+N + EN F+VVMLTKSK SS+ GAS+ S A ++ QPT TS PAP
Sbjct: 61 DNTITENGFLVVMLTKSKTSSAVGASSTSTA-------------STVQPTQTSTPPAPAS 107
Query: 120 APPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQI 179
P V ++P + A AP V + +D YG+AAS LVAGSNLE T+QQ+
Sbjct: 108 NP---VEVASPVVSQLPAVAPAASVSAPETTAVQANADPYGEAASILVAGSNLEQTIQQM 164
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP-PVARA-----SAGGQAG 233
LDMGGGSWDR+TV+RALRAAYNNPERAVEYLYSGIPE + PVAR+ A Q
Sbjct: 165 LDMGGGSWDRDTVVRALRAAYNNPERAVEYLYSGIPETAEIAVPVARSPPSNPGATDQGT 224
Query: 234 NPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMV 293
N ++ A AP+ GPNA PL+LFPQGLPN+G+ AG G LDFLRN+ QFQALRTMV
Sbjct: 225 NNVIAGESDSAEATAPSGGPNAAPLNLFPQGLPNLGAAAGGGALDFLRNNPQFQALRTMV 284
Query: 294 QANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVT 353
QANPQILQPMLQEL KQNP LMRLIQ+HQ +FL LINE +G++LGQ A+ MPQ++
Sbjct: 285 QANPQILQPMLQELSKQNPQLMRLIQDHQAEFLHLINEET---DGDLLGQFAAEMPQSIN 341
Query: 354 VTPEEREAIE 363
VTPEEREAIE
Sbjct: 342 VTPEEREAIE 351
>gi|224284592|gb|ACN40029.1| unknown [Picea sitchensis]
Length = 403
Score = 384 bits (987), Expect = e-104, Method: Compositional matrix adjust.
Identities = 224/385 (58%), Positives = 253/385 (65%), Gaps = 43/385 (11%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV VKTLKG HF+IEV+P D V +VKK IE VQG+ YP+ QQ+LI+QGKVLKD TT+E
Sbjct: 1 MKVSVKTLKGNHFDIEVQPTDTVLNVKKQIEQVQGAQTYPSEQQLLIYQGKVLKDETTIE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKV EN+F+VVML+K+K +++G S+ AP S P Q A
Sbjct: 61 ENKVTENTFLVVMLSKTKATTAGTSSTQQAP-------PSVSPAPAQNPVAPVPAAAAAQ 113
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P +A P A A DVYGQAASNLVAG+NLE +QQIL
Sbjct: 114 LSSLAPATATPTAGAGTTQTDA--------------DVYGQAASNLVAGNNLEHVIQQIL 159
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAV-PPVAR-----ASAGGQAGN 234
DMGGGSWDR+TV+RALRAAYNNPERAVEYLYSGIPE V PPVAR A
Sbjct: 160 DMGGGSWDRDTVVRALRAAYNNPERAVEYLYSGIPETAEVAPPVARPTPSVGQAANPTAP 219
Query: 235 PPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPN----------------MGSNAGAGTLD 278
PA A A+ +GPNA PLDLFPQGLPN G+ AGAG LD
Sbjct: 220 APAAAAAAAAASATAQAGPNAAPLDLFPQGLPNLGAGAGAGAGAGLGAGAGAGAGAGALD 279
Query: 279 FLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEG 338
FLRN+ QFQALRTMVQANPQILQPMLQEL KQNP LMRLIQ+HQ DFLRL+NEPVEG EG
Sbjct: 280 FLRNNPQFQALRTMVQANPQILQPMLQELSKQNPQLMRLIQDHQADFLRLVNEPVEGAEG 339
Query: 339 NVLGQLASAMPQAVTVTPEEREAIE 363
+ QLA AMPQA+ VTPEEREAIE
Sbjct: 340 DFFNQLAGAMPQAINVTPEEREAIE 364
>gi|357158333|ref|XP_003578094.1| PREDICTED: probable DNA repair protein RAD23-like isoform 1
[Brachypodium distachyon]
Length = 395
Score = 380 bits (977), Expect = e-103, Method: Compositional matrix adjust.
Identities = 217/366 (59%), Positives = 261/366 (71%), Gaps = 19/366 (5%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV VKTLKG+ F+IEV P DKVSDVKK IE+ QG +VYPA QQMLIHQG VLKD TTLE
Sbjct: 1 MKVSVKTLKGSSFQIEVNPADKVSDVKKLIESSQGQNVYPADQQMLIHQGTVLKDDTTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTT-TSQTPAPTV 119
E+KV EN+F+V+ML ++K SSS A S P+NQ APPT T P SQ P
Sbjct: 61 ESKVLENNFLVIMLRQNKGSSSAAPAKSKEPSNQ------APPTQTVPANPPSQAPVVPA 114
Query: 120 APPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQI 179
P + P P +AP P +PA A A VS+ ++ YGQAASNLVAG NLEAT+Q I
Sbjct: 115 PPAAAAPAPIVPISAPTPTATASPASAVA---VSTEAETYGQAASNLVAGGNLEATIQSI 171
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 239
L+MGGG+WDR+TV+RALRAA+NNPERAVEYLYSGIPE +P ++ P
Sbjct: 172 LEMGGGTWDRDTVLRALRAAFNNPERAVEYLYSGIPEPMEIPAPPPSAQ------PADPV 225
Query: 240 QAQQPAAPA-PTSGPNANPLDLFPQGLPNMGSN-AGAGTLDFLRNSQQFQALRTMVQANP 297
QA Q PA +SGPNA+PLDLFPQ LPN +N AG G LD LRN+ QF++L ++VQANP
Sbjct: 226 QALQATQPAVASSGPNASPLDLFPQALPNASANAAGEGNLDVLRNNAQFRSLLSLVQANP 285
Query: 298 QILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEG-NVLGQLASAMPQAVTVTP 356
QILQP+LQELGKQNP +++LIQ++Q +FLRLINEP EG E N+L Q A +PQ + VTP
Sbjct: 286 QILQPLLQELGKQNPQILQLIQDNQAEFLRLINEPAEGDEDENLLDQFAEGVPQTIAVTP 345
Query: 357 EEREAI 362
EE EAI
Sbjct: 346 EENEAI 351
>gi|413954952|gb|AFW87601.1| hypothetical protein ZEAMMB73_681598 [Zea mays]
Length = 399
Score = 379 bits (973), Expect = e-102, Method: Compositional matrix adjust.
Identities = 223/375 (59%), Positives = 266/375 (70%), Gaps = 24/375 (6%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKGT+FEIE P+ V+DVK+ IET QG Y A QQMLI+QGK+LKD TTLE
Sbjct: 1 MKLNVKTLKGTNFEIEASPDASVADVKRIIETTQGQSTYRADQQMLIYQGKILKDETTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
N VAENSF+V+ML+K+K SSSGAST + A A +AP + T AP
Sbjct: 61 SNGVAENSFLVIMLSKAKASSSGASTATTAKAPATLAQPAAPVAPAASVARTPTQAPV-- 118
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
+ E+APP P APA A + +DVY QAASNLV+G+NLE T+QQIL
Sbjct: 119 ---ATAETAPPSVQPQAAPAATVA-------ATDDADVYSQAASNLVSGNNLEQTIQQIL 168
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGN----PP 236
DMGGG+W+R+TV+RALRAAYNNPERA++YLYSGIPE PVARA A GQ N P
Sbjct: 169 DMGGGTWERDTVVRALRAAYNNPERAIDYLYSGIPENVEAQPVARAPAAGQQTNQQAASP 228
Query: 237 AQTQAQQPAAPAPTS-GPNANPLDLFPQGLPNMGSN------AGAGTLDFLRNSQQFQAL 289
AQ P P+P S GPNANPL+LFPQG+P+ GSN AG+G LD LR QFQAL
Sbjct: 229 AQPAVALPVQPSPASAGPNANPLNLFPQGVPSGGSNPGVVPGAGSGALDALRQLPQFQAL 288
Query: 290 RTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG-EGNVLGQLASAM 348
+VQANPQILQPMLQELGKQNP ++RLIQE+Q +FLRL+NE EGG GN+LGQLA+A+
Sbjct: 289 LQLVQANPQILQPMLQELGKQNPQILRLIQENQAEFLRLVNESPEGGPGGNILGQLAAAV 348
Query: 349 PQAVTVTPEEREAIE 363
PQ +TVTPEEREAI+
Sbjct: 349 PQTLTVTPEEREAIQ 363
>gi|226500270|ref|NP_001142065.1| uncharacterized protein LOC100274222 [Zea mays]
gi|194706976|gb|ACF87572.1| unknown [Zea mays]
gi|413954953|gb|AFW87602.1| DNA repair protein RAD23 [Zea mays]
Length = 405
Score = 379 bits (973), Expect = e-102, Method: Compositional matrix adjust.
Identities = 223/375 (59%), Positives = 266/375 (70%), Gaps = 24/375 (6%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKGT+FEIE P+ V+DVK+ IET QG Y A QQMLI+QGK+LKD TTLE
Sbjct: 1 MKLNVKTLKGTNFEIEASPDASVADVKRIIETTQGQSTYRADQQMLIYQGKILKDETTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
N VAENSF+V+ML+K+K SSSGAST + A A +AP + T AP
Sbjct: 61 SNGVAENSFLVIMLSKAKASSSGASTATTAKAPATLAQPAAPVAPAASVARTPTQAPV-- 118
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
+ E+APP P APA A + +DVY QAASNLV+G+NLE T+QQIL
Sbjct: 119 ---ATAETAPPSVQPQAAPAATVA-------ATDDADVYSQAASNLVSGNNLEQTIQQIL 168
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGN----PP 236
DMGGG+W+R+TV+RALRAAYNNPERA++YLYSGIPE PVARA A GQ N P
Sbjct: 169 DMGGGTWERDTVVRALRAAYNNPERAIDYLYSGIPENVEAQPVARAPAAGQQTNQQAASP 228
Query: 237 AQTQAQQPAAPAPTS-GPNANPLDLFPQGLPNMGSN------AGAGTLDFLRNSQQFQAL 289
AQ P P+P S GPNANPL+LFPQG+P+ GSN AG+G LD LR QFQAL
Sbjct: 229 AQPAVALPVQPSPASAGPNANPLNLFPQGVPSGGSNPGVVPGAGSGALDALRQLPQFQAL 288
Query: 290 RTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG-EGNVLGQLASAM 348
+VQANPQILQPMLQELGKQNP ++RLIQE+Q +FLRL+NE EGG GN+LGQLA+A+
Sbjct: 289 LQLVQANPQILQPMLQELGKQNPQILRLIQENQAEFLRLVNESPEGGPGGNILGQLAAAV 348
Query: 349 PQAVTVTPEEREAIE 363
PQ +TVTPEEREAI+
Sbjct: 349 PQTLTVTPEEREAIQ 363
>gi|357124588|ref|XP_003563980.1| PREDICTED: putative DNA repair protein RAD23-3-like [Brachypodium
distachyon]
Length = 413
Score = 377 bits (969), Expect = e-102, Method: Compositional matrix adjust.
Identities = 237/379 (62%), Positives = 277/379 (73%), Gaps = 23/379 (6%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+FVKTLKGT+FEIE PE V++VK+ IE QG +VYPA QQMLIHQGK+LKD TTLE
Sbjct: 1 MKLFVKTLKGTNFEIEASPEASVAEVKRIIEGAQGQNVYPADQQMLIHQGKILKDDTTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQ-TTSSAPPTSTQPTT-TSQTPAPT 118
N VAENSF+V+ML+K+K S SG ST S AP QAQ T A T + P T ++TP T
Sbjct: 61 GNNVAENSFLVIMLSKAKASPSGPSTASKAPTIQAQPATPVAAATPSGPATPVARTPPST 120
Query: 119 VAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQ 178
P S E APP A P PA + PA A S +DVY QAASNLV+G +LE TVQ
Sbjct: 121 A--PVSASELAPPSAQP-PAGSDIPA---AAVTASGDADVYSQAASNLVSGGSLEQTVQH 174
Query: 179 ILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGG-QAGNPPA 237
ILDMGGG+W+R+ V+RALRAAYNNPERA++YLYSGIPE PPVARA A QA NP A
Sbjct: 175 ILDMGGGTWERDMVVRALRAAYNNPERAIDYLYSGIPENVEAPPVARAPAPVQQATNPQA 234
Query: 238 QTQAQ-----QPAAPAPTSGPNANPLDLFPQGLPNMGSN------AGAGTLDFLRNSQQF 286
+QA QP+ A ++GPNANPL+LFPQG+P GSN AGAG LD LR QF
Sbjct: 235 LSQAAPVPPVQPSGVA-SAGPNANPLNLFPQGVPTGGSNPGAGVGAGAGALDALRALPQF 293
Query: 287 QALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINE-PVEGGEGNVLGQLA 345
QAL +VQANPQILQPMLQELGKQNP ++RLIQE+Q +FLRL+NE P G GN+LGQLA
Sbjct: 294 QALLALVQANPQILQPMLQELGKQNPQILRLIQENQAEFLRLVNETPESGAAGNILGQLA 353
Query: 346 SAMPQ-AVTVTPEEREAIE 363
+AMPQ AVTVTPEERE+I+
Sbjct: 354 AAMPQAAVTVTPEERESIQ 372
>gi|115467470|ref|NP_001057334.1| Os06g0264300 [Oryza sativa Japonica Group]
gi|53793157|dbj|BAD54365.1| putative RAD23 protein [Oryza sativa Japonica Group]
gi|53793163|dbj|BAD54370.1| putative RAD23 protein [Oryza sativa Japonica Group]
gi|113595374|dbj|BAF19248.1| Os06g0264300 [Oryza sativa Japonica Group]
gi|125596775|gb|EAZ36555.1| hypothetical protein OsJ_20893 [Oryza sativa Japonica Group]
gi|215692584|dbj|BAG88004.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 413
Score = 373 bits (957), Expect = e-101, Method: Compositional matrix adjust.
Identities = 234/394 (59%), Positives = 273/394 (69%), Gaps = 53/394 (13%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+FVKTLKGT+FEIE PE V++VK+ IE+ QG +VYPA QQMLIHQGK+LKD TTLE
Sbjct: 1 MKLFVKTLKGTNFEIEASPEASVAEVKRIIESTQGQNVYPADQQMLIHQGKILKDDTTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
NKVAENSF+V+ML+K+K SSSGAST S AP +Q+Q TP +VA
Sbjct: 61 GNKVAENSFLVIMLSKAKASSSGASTASKAPVSQSQPA---------------TPVASVA 105
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPA---------------PAPAPVSSVSDVYGQAASN 165
PPP AP P PAP A A SS +DVY QAASN
Sbjct: 106 -------RTPPPQAPVVTPEPAPPSAQPPVASATPAAAATPAAAVTASSDADVYSQAASN 158
Query: 166 LVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP-PVA 224
LV+GSNLE T+QQILDMGGG+W+R+ V+RALRAAYNNPERA++YLYSGIPE P PVA
Sbjct: 159 LVSGSNLEQTIQQILDMGGGTWERDMVVRALRAAYNNPERAIDYLYSGIPENVEPPQPVA 218
Query: 225 RASAGGQAGNPPAQTQAQQPAAPAP-----TSGPNANPLDLFPQGLPNMGSN-------- 271
RA A Q GNP +QAQ P SGPNANPL+LFPQG+P+ GSN
Sbjct: 219 RAPAAVQQGNPQVPSQAQAAPPPPVQPAGGASGPNANPLNLFPQGIPSAGSNPGAAAGAG 278
Query: 272 AGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINE 331
AGAG LD LR QFQAL +VQANPQILQPMLQELGKQNP ++RLIQE+Q +FLRL+NE
Sbjct: 279 AGAGALDALRQLPQFQALLALVQANPQILQPMLQELGKQNPQILRLIQENQAEFLRLVNE 338
Query: 332 PVEGGE--GNVLGQLASAMPQAVTVTPEEREAIE 363
+ G GN+LGQLA+AMPQA+TVTPEEREAI+
Sbjct: 339 SPDSGAAGGNILGQLAAAMPQALTVTPEEREAIQ 372
>gi|125554823|gb|EAZ00429.1| hypothetical protein OsI_22453 [Oryza sativa Indica Group]
Length = 413
Score = 373 bits (957), Expect = e-101, Method: Compositional matrix adjust.
Identities = 234/394 (59%), Positives = 273/394 (69%), Gaps = 53/394 (13%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+FVKTLKGT+FEIE PE V++VK+ IE+ QG +VYPA QQMLIHQGK+LKD TTLE
Sbjct: 1 MKLFVKTLKGTNFEIEASPEASVAEVKRIIESTQGQNVYPADQQMLIHQGKILKDDTTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
NKVAENSF+V+ML+K+K SSSGAST S AP +Q+Q TP +VA
Sbjct: 61 GNKVAENSFLVIMLSKAKASSSGASTASKAPVSQSQPA---------------TPVASVA 105
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPA---------------PAPAPVSSVSDVYGQAASN 165
PPP AP P PAP A A SS +DVY QAASN
Sbjct: 106 -------RTPPPQAPVVTPEPAPPSAQPPVASATPAAAATPAAAVTASSDADVYSQAASN 158
Query: 166 LVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP-PVA 224
LV+GSNLE T+QQILDMGGG+W+R+ V+RALRAAYNNPERA++YLYSGIPE P PVA
Sbjct: 159 LVSGSNLEQTIQQILDMGGGTWERDMVVRALRAAYNNPERAIDYLYSGIPENVEPPQPVA 218
Query: 225 RASAGGQAGNPPAQTQAQQPAAPAP-----TSGPNANPLDLFPQGLPNMGSN-------- 271
RA A Q GNP +QAQ P SGPNANPL+LFPQG+P+ GSN
Sbjct: 219 RAPAAVQQGNPQVPSQAQAAPPPPVQPAGGASGPNANPLNLFPQGIPSAGSNPGAAAGAG 278
Query: 272 AGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINE 331
AGAG LD LR QFQAL +VQANPQILQPMLQELGKQNP ++RLIQE+Q +FLRL+NE
Sbjct: 279 AGAGALDALRQLPQFQALLALVQANPQILQPMLQELGKQNPQILRLIQENQAEFLRLVNE 338
Query: 332 PVEGGE--GNVLGQLASAMPQAVTVTPEEREAIE 363
+ G GN+LGQLA+AMPQA+TVTPEEREAI+
Sbjct: 339 SPDSGTAGGNILGQLAAAMPQALTVTPEEREAIQ 372
>gi|356567282|ref|XP_003551850.1| PREDICTED: putative DNA repair protein RAD23-4-like [Glycine max]
Length = 375
Score = 373 bits (957), Expect = e-100, Method: Compositional matrix adjust.
Identities = 203/363 (55%), Positives = 250/363 (68%), Gaps = 29/363 (7%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKGTHF ++V P+D V+ VKKNIET QG+DVYPA+QQMLIHQGKVL D TTLE
Sbjct: 1 MKINVKTLKGTHFVLQVNPQDTVAVVKKNIETAQGADVYPAAQQMLIHQGKVLNDATTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKV EN+FVV+ML+K+KVSS S+AP+N TQP ++ + T
Sbjct: 61 ENKVVENNFVVIMLSKNKVSSGA----SSAPSN----------LGTQPQSSLPPTSSTSQ 106
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
PP S + +P P P +V +Y AASNL+AGSNLE T+QQIL
Sbjct: 107 PPASAVGQGESNSEQSPVITP---------PTIAVPSIYDHAASNLMAGSNLETTIQQIL 157
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
+MGGG+WDR+TV AL AA+NNPERA+EYLYSGIPE+ VP R+ GQA N + Q
Sbjct: 158 EMGGGNWDRDTVTGALHAAFNNPERAIEYLYSGIPERADVPAAVRSLITGQAEN--SSIQ 215
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQIL 300
+ QPA PT GPN NPL+LFPQGLPNM + G LD LRN ++FQALR ++ NPQIL
Sbjct: 216 STQPA--VPTGGPNTNPLNLFPQGLPNMSAIDNRGDLDSLRNREEFQALRETMRENPQIL 273
Query: 301 QPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEERE 360
QPM+QELG+QNP LM++IQ+HQ D L L+NEP EG E N+ QL S + VT+TPEE E
Sbjct: 274 QPMIQELGQQNPQLMQIIQDHQEDILDLMNEP-EGDE-NLQSQLDSMISGTVTITPEENE 331
Query: 361 AIE 363
AI+
Sbjct: 332 AIQ 334
>gi|30409726|dbj|BAC76393.1| RAD23-like protein [Arabidopsis thaliana]
Length = 337
Score = 371 bits (952), Expect = e-100, Method: Compositional matrix adjust.
Identities = 217/369 (58%), Positives = 237/369 (64%), Gaps = 77/369 (20%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+FVKTLKGTHFEIEVKPED
Sbjct: 1 MKIFVKTLKGTHFEIEVKPEDS-------------------------------------- 22
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
VV + K+ S GA PA + + T T TP P
Sbjct: 23 ----------VVDVKKNIESVQGADVY---PAAKQMLIHQGKVLKDETTETVTTPIPE-- 67
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P PA + PAP APV S DVYGQAASNL AGSNLE+T+QQIL
Sbjct: 68 --------------PVPATISSSTPAPDSAPVGSQGDVYGQAASNLAAGSNLESTIQQIL 113
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVAR--ASAGGQAGNPPAQ 238
DMGGG+WDRETV+ ALRAA+NNPERAVEYLY+GIPEQ VPPVAR ASAG Q NPPAQ
Sbjct: 114 DMGGGTWDRETVVLALRAAFNNPERAVEYLYTGIPEQAEVPPVARPPASAG-QPANPPAQ 172
Query: 239 TQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQ 298
TQ QPAA AP SGPNANPLDLFPQGLPN+G N GAGTLDFLRNSQQFQALR MVQANPQ
Sbjct: 173 TQ--QPAA-APASGPNANPLDLFPQGLPNVGGNPGAGTLDFLRNSQQFQALRAMVQANPQ 229
Query: 299 ILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG--EGNVLGQLASAM--PQAVTV 354
+LQPMLQELGKQNP+LMRLIQ+HQ DFLRLINEPVEGG GN+LGQ+A+ M PQA+ V
Sbjct: 230 VLQPMLQELGKQNPNLMRLIQDHQADFLRLINEPVEGGGESGNLLGQMAAGMPQPQAIQV 289
Query: 355 TPEEREAIE 363
T EEREAIE
Sbjct: 290 THEEREAIE 298
>gi|195636354|gb|ACG37645.1| DNA repair protein RAD23 [Zea mays]
Length = 405
Score = 370 bits (950), Expect = e-100, Method: Compositional matrix adjust.
Identities = 220/375 (58%), Positives = 262/375 (69%), Gaps = 24/375 (6%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKGT+FEIE P+ V+DVK+ IET QG Y A QQMLI+QGK+LKD TTLE
Sbjct: 1 MKLNVKTLKGTNFEIEASPDASVADVKRIIETTQGQSTYRADQQMLIYQGKILKDETTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
N VAENSF+V+ML+K+K SSSGAST +AA A +AP + T AP
Sbjct: 61 SNGVAENSFLVIMLSKAKASSSGASTTTAAKAPATLAQPAAPVPPAASVARTPTQAPVAT 120
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
A AP A A A + +DVY QAASNLV+G++LE T+QQIL
Sbjct: 121 ------------AETAPPSAQPQAAPAATVAATDDADVYSQAASNLVSGNSLEQTIQQIL 168
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGN----PP 236
DMGGG+W+R+TV+RALRAAYNNPERA++YLYSGIPE PVARA A GQ N P
Sbjct: 169 DMGGGTWERDTVVRALRAAYNNPERAIDYLYSGIPENVEAQPVARAPAAGQQTNQQAASP 228
Query: 237 AQTQAQQPAAPAPTS-GPNANPLDLFPQGLPNMGSN------AGAGTLDFLRNSQQFQAL 289
AQ P P+P S GPNANPL+LFPQG+P+ GSN AG+G LD LR QFQAL
Sbjct: 229 AQPAVALPVQPSPASAGPNANPLNLFPQGVPSGGSNPGVIPGAGSGALDALRQLPQFQAL 288
Query: 290 RTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG-EGNVLGQLASAM 348
+VQANPQILQPMLQELGKQNP ++RLIQE+Q +FLRL+NE EGG GN+LGQLA+A+
Sbjct: 289 LQLVQANPQILQPMLQELGKQNPQILRLIQENQAEFLRLVNESPEGGPGGNILGQLAAAV 348
Query: 349 PQAVTVTPEEREAIE 363
PQ +TVTPEEREAI+
Sbjct: 349 PQTLTVTPEEREAIQ 363
>gi|125561624|gb|EAZ07072.1| hypothetical protein OsI_29318 [Oryza sativa Indica Group]
Length = 406
Score = 368 bits (945), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 216/373 (57%), Positives = 258/373 (69%), Gaps = 23/373 (6%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV +KTLKG+ FEI+V+P KVSDVKK IE QG +VYPA QQMLIHQG VLK+ TTLE
Sbjct: 1 MKVSIKTLKGSSFEIDVEPTSKVSDVKKLIEVTQGDNVYPADQQMLIHQGNVLKNDTTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKV EN+F+V+ML+K SS+ ++++ PT + AP
Sbjct: 61 ENKVVENNFIVIMLSKKGSSSA-------------ASSTAKEPTKQPSVDRAIPTAPATQ 107
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
PP + P AP P A APA A S+ +D YGQAASNLVAGSNLE TVQ IL
Sbjct: 108 PPAPPAPVSEPVTAPVPTATTASAPAAAVTAASTEADNYGQAASNLVAGSNLEGTVQSIL 167
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARAS---AGGQAGNPPA 237
+MGGG+WDR+TV+RALRAAYNNPERAVEYLY+G+PEQ P +A A QA PA
Sbjct: 168 EMGGGAWDRDTVMRALRAAYNNPERAVEYLYTGVPEQAEAPAAVQALPVPAAVQALPVPA 227
Query: 238 QTQAQQPA-AP------APTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALR 290
Q P+ AP P+SGPNANPLDLFPQ LPN +NAG G LD LRN+ QF+ L
Sbjct: 228 AVQPVDPSQAPQSAQLSIPSSGPNANPLDLFPQVLPNASANAGGGNLDVLRNNSQFRGLL 287
Query: 291 TMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQ 350
++VQANPQILQP+LQELGKQNP +++LIQE+Q +FLRLINEP EG EGN+L Q A+ MPQ
Sbjct: 288 SLVQANPQILQPLLQELGKQNPQILQLIQENQAEFLRLINEPAEGAEGNLLDQFAAGMPQ 347
Query: 351 AVTVTPEEREAIE 363
V VTPEE EAI+
Sbjct: 348 TVAVTPEENEAIQ 360
>gi|115476516|ref|NP_001061854.1| Os08g0430200 [Oryza sativa Japonica Group]
gi|38175472|dbj|BAD01169.1| putative osRAD23 [Oryza sativa Japonica Group]
gi|113623823|dbj|BAF23768.1| Os08g0430200 [Oryza sativa Japonica Group]
gi|125603492|gb|EAZ42817.1| hypothetical protein OsJ_27402 [Oryza sativa Japonica Group]
gi|215694056|dbj|BAG89255.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 406
Score = 368 bits (945), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 216/373 (57%), Positives = 258/373 (69%), Gaps = 23/373 (6%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV +KTLKG+ FEI+V+P KVSDVKK IE QG +VYPA QQMLIHQG VLK+ TTLE
Sbjct: 1 MKVSIKTLKGSSFEIDVEPTSKVSDVKKLIEVTQGDNVYPADQQMLIHQGNVLKNDTTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKV EN+F+V+ML+K SS+ ++++ PT + AP
Sbjct: 61 ENKVVENNFIVIMLSKKGSSSA-------------ASSTAKEPTKQPSVDRAIPTAPATQ 107
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
PP + P AP P A APA A S+ +D YGQAASNLVAGSNLE TVQ IL
Sbjct: 108 PPAPPAPVSEPVTAPVPTATTASAPAAAVTAASTEADNYGQAASNLVAGSNLEGTVQSIL 167
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARAS---AGGQAGNPPA 237
+MGGG+WDR+TV+RALRAAYNNPERAVEYLY+G+PEQ P +A A QA PA
Sbjct: 168 EMGGGAWDRDTVMRALRAAYNNPERAVEYLYTGVPEQAEAPAAVQALPVPAAVQALPVPA 227
Query: 238 QTQAQQPA-AP------APTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALR 290
Q P+ AP P+SGPNANPLDLFPQ LPN +NAG G LD LRN+ QF+ L
Sbjct: 228 AVQPVDPSQAPQSAQLSIPSSGPNANPLDLFPQVLPNASANAGGGNLDVLRNNSQFRGLL 287
Query: 291 TMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQ 350
++VQANPQILQP+LQELGKQNP +++LIQE+Q +FLRLINEP EG EGN+L Q A+ MPQ
Sbjct: 288 SLVQANPQILQPLLQELGKQNPQILQLIQENQAEFLRLINEPAEGAEGNLLDQFAAGMPQ 347
Query: 351 AVTVTPEEREAIE 363
V VTPEE EAI+
Sbjct: 348 TVAVTPEENEAIQ 360
>gi|356521678|ref|XP_003529480.1| PREDICTED: putative DNA repair protein RAD23-1-like isoform 1
[Glycine max]
Length = 363
Score = 367 bits (942), Expect = 5e-99, Method: Compositional matrix adjust.
Identities = 202/363 (55%), Positives = 244/363 (67%), Gaps = 41/363 (11%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI V+P D V VKKNIE VQG D YP QQ+LIH GKVLKD TTL
Sbjct: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLV 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKV+E+ F+VVML+KSK S S A++ S QP + PA TV
Sbjct: 61 ENKVSEDGFLVVMLSKSKTSGSAAAS------------------SVQPASN---PATTV- 98
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVS-DVYGQAASNLVAGSNLEATVQQI 179
S+ S PP P A + + AP ++VS D YG AASNLVAGSNLE T+QQI
Sbjct: 99 ---SMSNSTPPSDPPVQTQAANNSTSSTDAPTTNVSADTYGLAASNLVAGSNLEQTIQQI 155
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 239
+DMGGG+WDR+TV RALRAAYNNPERA++YLYSGIPE V +AG +G P
Sbjct: 156 MDMGGGNWDRDTVSRALRAAYNNPERAIDYLYSGIPEAAEVAVPVPQTAGMSSGAVPV-- 213
Query: 240 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQI 299
GPN++PL++FPQ + + AG G+LDFLRN+ QFQALR+MVQ+NPQI
Sbjct: 214 ------------GPNSSPLNMFPQETIS-STGAGLGSLDFLRNNPQFQALRSMVQSNPQI 260
Query: 300 LQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEER 359
LQP+LQELGKQNP L+RLIQEH +FL+LINEPVEG EG++ Q MP A+ VTP E+
Sbjct: 261 LQPVLQELGKQNPGLLRLIQEHHGEFLQLINEPVEGSEGDMFEQPEQDMPHAINVTPAEQ 320
Query: 360 EAI 362
EAI
Sbjct: 321 EAI 323
>gi|255641364|gb|ACU20959.1| unknown [Glycine max]
Length = 363
Score = 367 bits (942), Expect = 5e-99, Method: Compositional matrix adjust.
Identities = 201/363 (55%), Positives = 242/363 (66%), Gaps = 41/363 (11%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI V+P D V VKKNIE VQG D YP QQ+LIH GKVLKD TTL
Sbjct: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLV 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKV+E+ F+VVML+KSK S S A+ SS P S PTT S +
Sbjct: 61 ENKVSEDGFLVVMLSKSKTSGSAAA-------------SSVQPASNPPTTVSTS------ 101
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVS-DVYGQAASNLVAGSNLEATVQQI 179
S PP P A + + AP ++VS D YG AASNLVAGSNLE T+QQI
Sbjct: 102 ------NSTPPSDPPVQTQAANNSTSSTDAPTTNVSADTYGLAASNLVAGSNLEQTIQQI 155
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 239
+DMGGG+WDR+TV RALRAAYNNPERA++YLYSGIPE V +AG +G P
Sbjct: 156 MDMGGGNWDRDTVSRALRAAYNNPERAIDYLYSGIPEAAEVAVPVPQTAGISSGAVPV-- 213
Query: 240 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQI 299
GPN++PL++FPQ + + AG G+LDFLRN+ QFQALR+MVQ+NPQI
Sbjct: 214 ------------GPNSSPLNMFPQETIS-STGAGLGSLDFLRNNPQFQALRSMVQSNPQI 260
Query: 300 LQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEER 359
LQP+LQELGKQNP L+RLIQEH +FL+LINEPV+G EG++ Q MP A+ VTP E+
Sbjct: 261 LQPVLQELGKQNPGLLRLIQEHHGEFLQLINEPVDGSEGDIFEQPEQDMPHAINVTPTEQ 320
Query: 360 EAI 362
EAI
Sbjct: 321 EAI 323
>gi|357147838|ref|XP_003574508.1| PREDICTED: probable DNA repair protein RAD23-like [Brachypodium
distachyon]
Length = 394
Score = 367 bits (941), Expect = 6e-99, Method: Compositional matrix adjust.
Identities = 211/363 (58%), Positives = 251/363 (69%), Gaps = 15/363 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV +KTLKG+ FEIEV P KV D+KK IE QG +VYPA QQMLIHQG VLK+ TTLE
Sbjct: 1 MKVSIKTLKGSSFEIEVDPTSKVVDLKKLIENTQGQNVYPADQQMLIHQGNVLKNDTTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKV EN+F+V+ML+K K S+S AS + P Q +AP QTP
Sbjct: 61 ENKVLENNFIVIMLSK-KGSTSAASGTAKEPTKQPMVDRAAPVAPAMQLPAEQTPV---- 115
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P SAP P PA A A S+ +D YGQAAS+LVAGSNLE TVQ IL
Sbjct: 116 ----TPVSAP---VPTALAVAPPAATAAAAAASTQADPYGQAASSLVAGSNLEGTVQSIL 168
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
+MGGG+WDR+TV+ ALRAA+NNPERAVEYLY+G+PEQ A P A GQ G+P Q
Sbjct: 169 EMGGGAWDRDTVVHALRAAFNNPERAVEYLYTGVPEQEAPAPAQEPPALGQQGDPVQAPQ 228
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQIL 300
+QQ A +SGPNANPLDLFPQ LPN +NA G LD LRN+ QF+ L ++VQANPQIL
Sbjct: 229 SQQAVA---SSGPNANPLDLFPQVLPNASANAAGGNLDVLRNNSQFRGLLSLVQANPQIL 285
Query: 301 QPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEERE 360
QP+LQELGKQNP +++LIQE+Q +FLRLINEP EG EGN+L Q + +PQ V VTP E E
Sbjct: 286 QPLLQELGKQNPQILQLIQENQAEFLRLINEPAEGAEGNLLEQFGAGVPQTVAVTPAENE 345
Query: 361 AIE 363
AI+
Sbjct: 346 AIQ 348
>gi|358249346|ref|NP_001240038.1| uncharacterized protein LOC100819019 [Glycine max]
gi|255647960|gb|ACU24437.1| unknown [Glycine max]
Length = 363
Score = 367 bits (941), Expect = 6e-99, Method: Compositional matrix adjust.
Identities = 201/363 (55%), Positives = 242/363 (66%), Gaps = 41/363 (11%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI V+P D V VKKNIE VQG D YP QQ+LIH GKVLKD TTL
Sbjct: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLV 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKV+E+ F+VVML+KSK S S A+ SS P S PTT S +
Sbjct: 61 ENKVSEDGFLVVMLSKSKTSGSAAA-------------SSVQPASNPPTTVSTS------ 101
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVS-DVYGQAASNLVAGSNLEATVQQI 179
S PP P A + + AP ++VS D YG AASNLVAGSNLE T+QQI
Sbjct: 102 ------NSTPPSDPPVQTQAANNSTSSTDAPTTNVSADTYGLAASNLVAGSNLEQTIQQI 155
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 239
+DMGGG+WDR+TV RALRAAYNNPERA++YLYSGIPE V +AG +G P
Sbjct: 156 MDMGGGNWDRDTVSRALRAAYNNPERAIDYLYSGIPEAAEVAVPVPQTAGISSGAVPV-- 213
Query: 240 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQI 299
GPN++PL++FPQ + + AG G+LDFLRN+ QFQALR+MVQ+NPQI
Sbjct: 214 ------------GPNSSPLNMFPQETIS-STGAGLGSLDFLRNNPQFQALRSMVQSNPQI 260
Query: 300 LQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEER 359
LQP+LQELGKQNP L+RLIQEH +FL+LINEPV+G EG++ Q MP A+ VTP E+
Sbjct: 261 LQPVLQELGKQNPGLLRLIQEHHGEFLQLINEPVDGSEGDIFEQPEQDMPHAINVTPAEQ 320
Query: 360 EAI 362
EAI
Sbjct: 321 EAI 323
>gi|226496401|ref|NP_001149140.1| LOC100282762 [Zea mays]
gi|195625028|gb|ACG34344.1| DNA repair protein RAD23 [Zea mays]
Length = 402
Score = 362 bits (928), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 227/375 (60%), Positives = 272/375 (72%), Gaps = 27/375 (7%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKGT+FEIE P+ V++VK+ IET QG YPA QQMLI+QGK+LKD TTLE
Sbjct: 1 MKLNVKTLKGTNFEIEASPDASVAEVKRIIETTQGQSTYPADQQMLIYQGKILKDETTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
N VAENSF+V+ML+K+K SSSGAST +AA A +AP TS T PT A
Sbjct: 61 SNGVAENSFLVIMLSKAKASSSGASTATAAKAPATPAQPAAPATSVVRT-------PTQA 113
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P + E+APP A APA A S +DVY QAASNLV+G+NLE T+QQIL
Sbjct: 114 PV-ATAETAPPSAQTQAAPAATAAA-------SDDADVYSQAASNLVSGNNLEQTIQQIL 165
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
DMGGG+W+R TV+RALRAAYNNPERA++YLYSGIPE PPVARA A GQ N A +
Sbjct: 166 DMGGGTWERGTVVRALRAAYNNPERAIDYLYSGIPENVEAPPVARAPAAGQQTNQQAPSP 225
Query: 241 AQQPA-----APAPTSGPNANPLDLFPQGLPNMGSN------AGAGTLDFLRNSQQFQAL 289
AQ A + A ++ PNANPL+LFPQG+P+ G+N AG+G LD LR QFQAL
Sbjct: 226 AQPAAAPPVQSSAASARPNANPLNLFPQGVPSGGANPGVVPAAGSGALDALRQLPQFQAL 285
Query: 290 RTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG-EGNVLGQLASAM 348
+VQANPQILQPMLQELGKQNP ++RLIQE+Q +F+RL+NE EGG GN+LGQLA+AM
Sbjct: 286 LQLVQANPQILQPMLQELGKQNPQILRLIQENQAEFVRLVNETPEGGPGGNILGQLAAAM 345
Query: 349 PQAVTVTPEEREAIE 363
PQ+VTVTPEEREAI+
Sbjct: 346 PQSVTVTPEEREAIQ 360
>gi|30409730|dbj|BAC76395.1| RAD23-like protein [Arabidopsis thaliana]
Length = 343
Score = 361 bits (926), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 219/364 (60%), Positives = 247/364 (67%), Gaps = 62/364 (17%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+FVKTL G++FEIEVKP DKVSDVK IETV+G++ YPA++QMLIHQGKVLKD TTLE
Sbjct: 1 MKIFVKTLSGSNFEIEVKPADKVSDVKTAIETVKGAE-YPAAKQMLIHQGKVLKDETTLE 59
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
EN V ENSF+V+ML+K+K S SGAST SA PA P++TQP T VA
Sbjct: 60 ENNVVENSFIVIMLSKTKASPSGASTASA-PA----------PSATQPQT--------VA 100
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSV-SDVYGQAASNLVAGSNLEATVQQI 179
PQ P A P P A A APA +SV +DVYGQAASNLVAG+ LE+TVQQI
Sbjct: 101 TPQ-----VSAPTASVPVPTSGTATAAAPATAASVQTDVYGQAASNLVAGTTLESTVQQI 155
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 239
LDMGGGSWDR+TV+RALRAA+NNPERAVEYLYSGIP Q +PPVA+A A G+ P
Sbjct: 156 LDMGGGSWDRDTVVRALRAAFNNPERAVEYLYSGIPAQAEIPPVAQAPATGEQAANPLAQ 215
Query: 240 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQI 299
Q A A T GPNANPL+LFPQG+P + AGAG LDFLRNSQQFQALR MVQANPQI
Sbjct: 216 PQQAAAPAAATGGPNANPLNLFPQGMPAADAGAGAGNLDFLRNSQQFQALRAMVQANPQI 275
Query: 300 LQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEER 359
LQPMLQE QL +AMPQAVTVTPEER
Sbjct: 276 LQPMLQE------------------------------------QLEAAMPQAVTVTPEER 299
Query: 360 EAIE 363
EAIE
Sbjct: 300 EAIE 303
>gi|90657662|gb|ABD96960.1| hypothetical protein [Cleome spinosa]
Length = 435
Score = 360 bits (925), Expect = 4e-97, Method: Compositional matrix adjust.
Identities = 180/212 (84%), Positives = 192/212 (90%), Gaps = 4/212 (1%)
Query: 154 SVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 213
S +DVYGQAASNLVAGSNLEA +QQILDMGGGSWDR+TV+RALRAAYNNPERAVEYLYSG
Sbjct: 187 SETDVYGQAASNLVAGSNLEAIIQQILDMGGGSWDRDTVVRALRAAYNNPERAVEYLYSG 246
Query: 214 IPEQTAVPPVARA-SAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNA 272
IPEQ VPPV R ++GGQ NPPAQ+Q QQPA APTSGPNANPLDLFPQGLPN+GSN
Sbjct: 247 IPEQAEVPPVTRPPASGGQPTNPPAQSQ-QQPAV-APTSGPNANPLDLFPQGLPNVGSNT 304
Query: 273 GAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP 332
GAGTLDFLRNSQQFQALR MVQANPQILQPMLQELGKQNPHLMRLIQEHQ DFLRLINEP
Sbjct: 305 GAGTLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPHLMRLIQEHQADFLRLINEP 364
Query: 333 VEGGE-GNVLGQLASAMPQAVTVTPEEREAIE 363
VEGGE GN++ QLA +PQA+ VTPEEREAIE
Sbjct: 365 VEGGEGGNIINQLAGGVPQAIQVTPEEREAIE 396
>gi|449501601|ref|XP_004161413.1| PREDICTED: putative DNA repair protein RAD23-1-like [Cucumis
sativus]
Length = 401
Score = 359 bits (922), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 211/380 (55%), Positives = 248/380 (65%), Gaps = 35/380 (9%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI V+ D V VKKNIE VQG D YP QQ+LIH GKVLKD +TL
Sbjct: 1 MKLTVKTLKGSHFEIRVQLTDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDESTLA 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKV+E F+VVML+KSK S S A Q+ T + P QP +S TPA V
Sbjct: 61 ENKVSEEGFLVVMLSKSKTSVS---------AGQSSTQPAQNPPVAQPVLSS-TPAAQVT 110
Query: 121 P---PQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVS---------DVYGQAASNLVA 168
P P + +P PA AP AP AP+ AP +S S D YGQAASNLVA
Sbjct: 111 PSPTPAAQVTPSPTPAPQAPTQAPTQAPSSAPKNTTSTSERVTDNVQTDTYGQAASNLVA 170
Query: 169 GSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP-PVARAS 227
G+NLE TVQQ++DMGGG+WDRETV+RALRAAYNNPERAV+YLYSGIPE V PV R
Sbjct: 171 GNNLEQTVQQLMDMGGGNWDRETVVRALRAAYNNPERAVDYLYSGIPESAEVAVPVGRFG 230
Query: 228 AGGQAGNPPAQTQAQQPAAPAPTSG-PNANPLDLFPQ---GLPNMGSNAGAGTLDFLRNS 283
+G Q + PAP SG PN PL++FPQ + G G+L+FLRN+
Sbjct: 231 SG--------QATETDASVPAPVSGAPNTAPLNMFPQEALSAGSGGGGGNLGSLEFLRNN 282
Query: 284 QQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQ 343
QFQALRTMV NPQILQPMLQELGKQNP L+RLIQ+H +FL+LINEPV+ EG + Q
Sbjct: 283 PQFQALRTMVHTNPQILQPMLQELGKQNPQLLRLIQDHHAEFLQLINEPVDNFEGEMFEQ 342
Query: 344 LASAMPQAVTVTPEEREAIE 363
MP A+ VTP E+ AIE
Sbjct: 343 AEPDMPHAINVTPAEQAAIE 362
>gi|414885361|tpg|DAA61375.1| TPA: hypothetical protein ZEAMMB73_350633 [Zea mays]
Length = 339
Score = 359 bits (921), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 215/366 (58%), Positives = 250/366 (68%), Gaps = 29/366 (7%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV VKTLKG+ F IEV P DKV+DVKK IE++Q YPA QQ+LIHQGKVLKD TTLE
Sbjct: 1 MKVSVKTLKGSSFHIEVDPTDKVADVKKVIESIQEQASYPADQQVLIHQGKVLKDDTTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
EN+V EN+F+V+ML ++K SSS AAPA T + AP T T P T QT A A
Sbjct: 61 ENQVVENNFLVIMLRQNKGSSS------AAPAKV--TANQAPSTQTVPATPPQTSAAPDA 112
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P VP SAP A A A A D YGQA SNLVAGSNLE T++ IL
Sbjct: 113 PAPIVPVSAPAATATASAAPAVAVSTEA--------DSYGQATSNLVAGSNLEGTIKSIL 164
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
+MGGG+WDR+TV+RALRAAYNNPERAVEYLYSGIPEQ VP A + P Q
Sbjct: 165 EMGGGTWDRDTVLRALRAAYNNPERAVEYLYSGIPEQMEVP------APPPSSQPVDPVQ 218
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQIL 300
A QPA +GPNANPLDLFPQ LPN +NA G LD LRN+ QFQ L +VQANPQIL
Sbjct: 219 AVQPA----QAGPNANPLDLFPQSLPNDSANANTGNLDVLRNNSQFQNLLGLVQANPQIL 274
Query: 301 QPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGN--VLGQLASAMPQAVTVTPEE 358
QP+LQEL KQNP +M+LIQE+Q +F+RLI+EP+EG E N +L Q+A A + + VTPEE
Sbjct: 275 QPLLQELRKQNPRVMQLIQENQAEFMRLISEPLEGDEENEMMLDQMADAT-ETIAVTPEE 333
Query: 359 REAIEP 364
EAI P
Sbjct: 334 NEAILP 339
>gi|195622128|gb|ACG32894.1| DNA repair protein RAD23 [Zea mays]
Length = 402
Score = 359 bits (921), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 226/375 (60%), Positives = 271/375 (72%), Gaps = 27/375 (7%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKGT+FEIE P+ V++VK+ IET QG YPA QQMLI+QGK+LKD TTLE
Sbjct: 1 MKLNVKTLKGTNFEIEASPDASVAEVKRIIETTQGQSTYPADQQMLIYQGKILKDETTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
N VAENSF+V+ML+K+K SSSGAST +AA A +AP TS T PT A
Sbjct: 61 SNGVAENSFLVIMLSKAKASSSGASTATAAKAPATPAQPAAPATSVVRT-------PTQA 113
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P + E+APP A APA A S +DVY QAASNLV+G+NLE T+QQIL
Sbjct: 114 PV-ATAETAPPSAQTQAAPAATAAA-------SDDADVYSQAASNLVSGNNLEQTIQQIL 165
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
DMGGG+W+R TV+RALRAAYNNPERA++YLYSGIPE PPVA A A GQ N A +
Sbjct: 166 DMGGGTWERGTVVRALRAAYNNPERAIDYLYSGIPENVEAPPVAGAPAAGQQTNQQAPSP 225
Query: 241 AQQPA-----APAPTSGPNANPLDLFPQGLPNMGSN------AGAGTLDFLRNSQQFQAL 289
AQ A + A ++ PNANPL+LFPQG+P+ G+N AG+G LD LR QFQAL
Sbjct: 226 AQPAAAPPVQSSAASARPNANPLNLFPQGVPSGGANPGVVPAAGSGALDALRQLPQFQAL 285
Query: 290 RTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG-EGNVLGQLASAM 348
+VQANPQILQPMLQELGKQNP ++RLIQE+Q +F+RL+NE EGG GN+LGQLA+AM
Sbjct: 286 LQLVQANPQILQPMLQELGKQNPQILRLIQENQAEFVRLVNETPEGGPGGNILGQLAAAM 345
Query: 349 PQAVTVTPEEREAIE 363
PQ+VTVTPEEREAI+
Sbjct: 346 PQSVTVTPEEREAIQ 360
>gi|356521682|ref|XP_003529482.1| PREDICTED: putative DNA repair protein RAD23-1-like isoform 3
[Glycine max]
Length = 348
Score = 358 bits (920), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 198/362 (54%), Positives = 236/362 (65%), Gaps = 54/362 (14%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI V+P D V VKKNIE VQG D YP QQ+LIH GKVLKD TTL
Sbjct: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLV 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKV+E+ F+VVML+KSK T+ SA +S QP + PA TV+
Sbjct: 61 ENKVSEDGFLVVMLSKSK------------------TSGSAAASSVQPASN---PATTVS 99
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
S P S PP A D YG AASNLVAGSNLE T+QQI+
Sbjct: 100 MSNSTPPSDPPVQTHVSA------------------DTYGLAASNLVAGSNLEQTIQQIM 141
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
DMGGG+WDR+TV RALRAAYNNPERA++YLYSGIPE V +AG +G P
Sbjct: 142 DMGGGNWDRDTVSRALRAAYNNPERAIDYLYSGIPEAAEVAVPVPQTAGMSSGAVPV--- 198
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQIL 300
GPN++PL++FPQ + + AG G+LDFLRN+ QFQALR+MVQ+NPQIL
Sbjct: 199 -----------GPNSSPLNMFPQETIS-STGAGLGSLDFLRNNPQFQALRSMVQSNPQIL 246
Query: 301 QPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEERE 360
QP+LQELGKQNP L+RLIQEH +FL+LINEPVEG EG++ Q MP A+ VTP E+E
Sbjct: 247 QPVLQELGKQNPGLLRLIQEHHGEFLQLINEPVEGSEGDMFEQPEQDMPHAINVTPAEQE 306
Query: 361 AI 362
AI
Sbjct: 307 AI 308
>gi|30699439|ref|NP_850982.1| putative DNA repair protein RAD23-1 [Arabidopsis thaliana]
gi|73620991|sp|Q84L33.3|RD23A_ARATH RecName: Full=Putative DNA repair protein RAD23-1; AltName:
Full=RAD23-like protein 1; Short=AtRAD23-1
gi|21593616|gb|AAM65583.1| DNA repair protein RAD23, putative [Arabidopsis thaliana]
gi|110735096|gb|ABG89118.1| Rad23-3Aii [synthetic construct]
gi|332198160|gb|AEE36281.1| putative DNA repair protein RAD23-1 [Arabidopsis thaliana]
Length = 371
Score = 358 bits (920), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 207/368 (56%), Positives = 249/368 (67%), Gaps = 41/368 (11%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI V P D + VKKNIE QG D YP QQ+LIH GKVLKD T+L
Sbjct: 1 MKLTVKTLKGSHFEIRVLPSDTIMAVKKNIEDSQGKDNYPCGQQLLIHNGKVLKDETSLV 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKV E F+VVML+KSK SG S A+ QT+S + P S TT+S PA A
Sbjct: 61 ENKVTEEGFLVVMLSKSK---SGGSAGQAS----VQTSSVSQPVSA--TTSSTKPA---A 108
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P S +S+P PA+P PA A +D YGQAAS LV+GS+LE VQQI+
Sbjct: 109 P--STTQSSPVPASPIPAQEQPAAQ----------TDTYGQAASTLVSGSSLEQMVQQIM 156
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE--QTAVP-PVARASAGGQAGNPPA 237
+MGGGSWD+ETV RALRAAYNNPERAV+YLYSGIP+ + AVP P A+ + G A
Sbjct: 157 EMGGGSWDKETVTRALRAAYNNPERAVDYLYSGIPQTAEVAVPVPEAQIAGSGAA----- 211
Query: 238 QTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANP 297
P APA + GPN++PLDLFPQ + GTL+FLRN+ QFQ LRTMV +NP
Sbjct: 212 ------PVAPA-SGGPNSSPLDLFPQETVAAAGSGDLGTLEFLRNNDQFQQLRTMVHSNP 264
Query: 298 QILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEG--GEGNVLGQLASAMPQAVTVT 355
QILQPMLQELGKQNP L+RLIQE+Q +FL+L+NEP EG GEG++ Q MP A+ VT
Sbjct: 265 QILQPMLQELGKQNPQLLRLIQENQAEFLQLVNEPYEGSDGEGDMFDQPEQEMPHAINVT 324
Query: 356 PEEREAIE 363
P E+EAI+
Sbjct: 325 PAEQEAIQ 332
>gi|194700232|gb|ACF84200.1| unknown [Zea mays]
gi|195625372|gb|ACG34516.1| DNA repair protein RAD23 [Zea mays]
gi|414885362|tpg|DAA61376.1| TPA: DNA repair protein RAD23 [Zea mays]
Length = 386
Score = 357 bits (915), Expect = 6e-96, Method: Compositional matrix adjust.
Identities = 214/364 (58%), Positives = 249/364 (68%), Gaps = 29/364 (7%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV VKTLKG+ F IEV P DKV+DVKK IE++Q YPA QQ+LIHQGKVLKD TTLE
Sbjct: 1 MKVSVKTLKGSSFHIEVDPTDKVADVKKVIESIQEQASYPADQQVLIHQGKVLKDDTTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
EN+V EN+F+V+ML ++K SSS AAPA T + AP T T P T QT A A
Sbjct: 61 ENQVVENNFLVIMLRQNKGSSS------AAPAKV--TANQAPSTQTVPATPPQTSAAPDA 112
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P VP SAP A A A A D YGQA SNLVAGSNLE T++ IL
Sbjct: 113 PAPIVPVSAPAATATASAAPAVAVSTEA--------DSYGQATSNLVAGSNLEGTIKSIL 164
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
+MGGG+WDR+TV+RALRAAYNNPERAVEYLYSGIPEQ VP A + P Q
Sbjct: 165 EMGGGTWDRDTVLRALRAAYNNPERAVEYLYSGIPEQMEVP------APPPSSQPVDPVQ 218
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQIL 300
A QPA +GPNANPLDLFPQ LPN +NA G LD LRN+ QFQ L +VQANPQIL
Sbjct: 219 AVQPA----QAGPNANPLDLFPQSLPNDSANANTGNLDVLRNNSQFQNLLGLVQANPQIL 274
Query: 301 QPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGN--VLGQLASAMPQAVTVTPEE 358
QP+LQEL KQNP +M+LIQE+Q +F+RLI+EP+EG E N +L Q+A A + + VTPEE
Sbjct: 275 QPLLQELRKQNPRVMQLIQENQAEFMRLISEPLEGDEENEMMLDQMADAT-ETIAVTPEE 333
Query: 359 REAI 362
EAI
Sbjct: 334 NEAI 337
>gi|30409718|dbj|BAC76389.1| RAD23-like protein [Arabidopsis thaliana]
Length = 371
Score = 355 bits (911), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 205/368 (55%), Positives = 248/368 (67%), Gaps = 41/368 (11%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI V P D + VKKNIE QG D YP QQ+LIH GKVLKD T+L
Sbjct: 1 MKLTVKTLKGSHFEIRVLPSDTIMAVKKNIEDSQGKDNYPCGQQLLIHNGKVLKDETSLV 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKV E F+VVML+KSK SG S A+ QT+S + P S TT+S PA A
Sbjct: 61 ENKVTEEGFLVVMLSKSK---SGGSAGQAS----VQTSSVSQPVSA--TTSSTKPA---A 108
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P S +S+P PA+P PA A +D YGQAAS LV+GS+LE VQQI+
Sbjct: 109 P--STTQSSPVPASPIPAQEQPAAQ----------TDTYGQAASTLVSGSSLEQMVQQIM 156
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE--QTAVP-PVARASAGGQAGNPPA 237
+MGGGSWD+ETV RALRAAYNNPERAV+YLYSGIP+ + AVP P A+ + G A
Sbjct: 157 EMGGGSWDKETVTRALRAAYNNPERAVDYLYSGIPQTAEVAVPVPEAQIAGSGAA----- 211
Query: 238 QTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANP 297
P APA + GPN++PLDLFPQ + GTL+FLRN+ Q + LRTMV +NP
Sbjct: 212 ------PVAPA-SGGPNSSPLDLFPQETVAAAGSGDLGTLEFLRNNDQLEQLRTMVHSNP 264
Query: 298 QILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEG--GEGNVLGQLASAMPQAVTVT 355
QILQPMLQELGKQNP L+RLIQE+Q +FL+L+NEP EG GEG++ Q MP A+ VT
Sbjct: 265 QILQPMLQELGKQNPQLLRLIQENQAEFLQLVNEPYEGSDGEGDMFDQPEQEMPHAINVT 324
Query: 356 PEEREAIE 363
P E+EAI+
Sbjct: 325 PAEQEAIQ 332
>gi|358346471|ref|XP_003637291.1| RAD23 protein [Medicago truncatula]
gi|355503226|gb|AES84429.1| RAD23 protein [Medicago truncatula]
Length = 366
Score = 355 bits (911), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 199/371 (53%), Positives = 242/371 (65%), Gaps = 54/371 (14%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI V P D + VKKNIE +QG D YP QQ+LIH GKVLKD TTL
Sbjct: 1 MKLTVKTLKGSHFEIRVHPSDSIMAVKKNIEDIQGKDNYPCGQQLLIHNGKVLKDETTLA 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+NKV+E+ F+VVML+KSKV + +A + QT S+ P T P +TS V
Sbjct: 61 DNKVSEDGFLVVMLSKSKV-------LGSAGTSSTQTASNPPITVPTPDSTS------VV 107
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
QS +A P AP + +D YGQAASNLVAGSNLE T+QQ++
Sbjct: 108 QTQSANNNASPAVL---------------APTNVTTDTYGQAASNLVAGSNLEQTIQQLI 152
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
DMGGGSWDR+TV RALRAA+NNPERAV+YLYSGIPE A
Sbjct: 153 DMGGGSWDRDTVNRALRAAFNNPERAVDYLYSGIPEAAE----------------VAVPA 196
Query: 241 AQQPAAPAPTSG---------PNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRT 291
AQ P+ P T G PN++PL++FPQ + G+ AGAG+LDFLRN+ QFQALRT
Sbjct: 197 AQYPSNPTETGGVTTGVVPGVPNSSPLNMFPQETIS-GAGAGAGSLDFLRNNPQFQALRT 255
Query: 292 MVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQA 351
MVQ+NPQILQP+LQELGKQNP L+RLI EH ++FL+LINEP++G EG+ Q MP A
Sbjct: 256 MVQSNPQILQPVLQELGKQNPGLLRLIDEHHSEFLQLINEPMDGTEGDNFDQAEQDMPHA 315
Query: 352 VTVTPEEREAI 362
V VTP E+EAI
Sbjct: 316 VNVTPAEQEAI 326
>gi|334184023|ref|NP_001185439.1| putative DNA repair protein RAD23-1 [Arabidopsis thaliana]
gi|332198161|gb|AEE36282.1| putative DNA repair protein RAD23-1 [Arabidopsis thaliana]
Length = 395
Score = 355 bits (911), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 212/382 (55%), Positives = 254/382 (66%), Gaps = 45/382 (11%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI V P D + VKKNIE QG D YP QQ+LIH GKVLKD T+L
Sbjct: 1 MKLTVKTLKGSHFEIRVLPSDTIMAVKKNIEDSQGKDNYPCGQQLLIHNGKVLKDETSLV 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKV E F+VVML+KSK SG S A+ QT+S + P S TT+S PA A
Sbjct: 61 ENKVTEEGFLVVMLSKSK---SGGSAGQAS----VQTSSVSQPVSA--TTSSTKPA---A 108
Query: 121 PPQSVPESAPPPAAPAPA---PAP----------APAPAPAPAPVSSV-SDVYGQAASNL 166
P S +S+P PA+P PA PA A P VS +D YGQAAS L
Sbjct: 109 P--STTQSSPVPASPIPAQEQPAVYAFVFSFAGLAFCPLYGFPKVSMAQTDTYGQAASTL 166
Query: 167 VAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE--QTAVP-PV 223
V+GS+LE VQQI++MGGGSWD+ETV RALRAAYNNPERAV+YLYSGIP+ + AVP P
Sbjct: 167 VSGSSLEQMVQQIMEMGGGSWDKETVTRALRAAYNNPERAVDYLYSGIPQTAEVAVPVPE 226
Query: 224 ARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNS 283
A+ + G A P APA + GPN++PLDLFPQ + GTL+FLRN+
Sbjct: 227 AQIAGSGAA-----------PVAPA-SGGPNSSPLDLFPQETVAAAGSGDLGTLEFLRNN 274
Query: 284 QQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEG--GEGNVL 341
QFQ LRTMV +NPQILQPMLQELGKQNP L+RLIQE+Q +FL+L+NEP EG GEG++
Sbjct: 275 DQFQQLRTMVHSNPQILQPMLQELGKQNPQLLRLIQENQAEFLQLVNEPYEGSDGEGDMF 334
Query: 342 GQLASAMPQAVTVTPEEREAIE 363
Q MP A+ VTP E+EAI+
Sbjct: 335 DQPEQEMPHAINVTPAEQEAIQ 356
>gi|22330746|ref|NP_565216.2| putative DNA repair protein RAD23-1 [Arabidopsis thaliana]
gi|14334442|gb|AAK59419.1| putative DNA repair protein RAD23 [Arabidopsis thaliana]
gi|17104777|gb|AAL34277.1| putative DNA repair protein RAD23 [Arabidopsis thaliana]
gi|332198158|gb|AEE36279.1| putative DNA repair protein RAD23-1 [Arabidopsis thaliana]
Length = 365
Score = 354 bits (908), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 201/368 (54%), Positives = 244/368 (66%), Gaps = 47/368 (12%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI V P D + VKKNIE QG D YP QQ+LIH GKVLKD T+L
Sbjct: 1 MKLTVKTLKGSHFEIRVLPSDTIMAVKKNIEDSQGKDNYPCGQQLLIHNGKVLKDETSLV 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKV E F+VVML+KSK SG S A+ + TTSS P + P+TT +P P
Sbjct: 61 ENKVTEEGFLVVMLSKSK---SGGSAGQASVQPVSATTSSTKPAA--PSTTQSSPVP--- 112
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
++P PA PA + +D YGQAAS LV+GS+LE VQQI+
Sbjct: 113 -------ASPIPAQEQPA---------------AQTDTYGQAASTLVSGSSLEQMVQQIM 150
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE--QTAVP-PVARASAGGQAGNPPA 237
+MGGGSWD+ETV RALRAAYNNPERAV+YLYSGIP+ + AVP P A+ + G A
Sbjct: 151 EMGGGSWDKETVTRALRAAYNNPERAVDYLYSGIPQTAEVAVPVPEAQIAGSGAA----- 205
Query: 238 QTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANP 297
P APA + GPN++PLDLFPQ + GTL+FLRN+ QFQ LRTMV +NP
Sbjct: 206 ------PVAPA-SGGPNSSPLDLFPQETVAAAGSGDLGTLEFLRNNDQFQQLRTMVHSNP 258
Query: 298 QILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEG--GEGNVLGQLASAMPQAVTVT 355
QILQPMLQELGKQNP L+RLIQE+Q +FL+L+NEP EG GEG++ Q MP A+ VT
Sbjct: 259 QILQPMLQELGKQNPQLLRLIQENQAEFLQLVNEPYEGSDGEGDMFDQPEQEMPHAINVT 318
Query: 356 PEEREAIE 363
P E+EAI+
Sbjct: 319 PAEQEAIQ 326
>gi|42572233|ref|NP_974211.1| putative DNA repair protein RAD23-3 [Arabidopsis thaliana]
gi|332640304|gb|AEE73825.1| putative DNA repair protein RAD23-3 [Arabidopsis thaliana]
Length = 299
Score = 354 bits (908), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 202/314 (64%), Positives = 232/314 (73%), Gaps = 45/314 (14%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+FVKTLKGTHFEIEVKPED V DVKKNIE+VQG+DVYPA++QMLIHQGKVLKD TT+E
Sbjct: 1 MKIFVKTLKGTHFEIEVKPEDSVVDVKKNIESVQGADVYPAAKQMLIHQGKVLKDETTIE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAP--- 117
ENKVAENSF+V+M+ KSK +S+ AS+ SA +QA+ S PP+++QP+ + QTPA
Sbjct: 61 ENKVAENSFIVIMMNKSKPASAAASSASAG-TSQAK---SIPPSTSQPSISPQTPASVSA 116
Query: 118 -------------------------TVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPV 152
TV P +PE P PA + PAP APV
Sbjct: 117 PVAPAPTRPPPPAPTPTPAPVAATETVTTP--IPE-------PVPATISSSTPAPDSAPV 167
Query: 153 SSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYS 212
S DVYGQAASNL AGSNLE+T+QQILDMGGG+WDRETV+ ALRAA+NNPERAVEYLY+
Sbjct: 168 GSQGDVYGQAASNLAAGSNLESTIQQILDMGGGTWDRETVVLALRAAFNNPERAVEYLYT 227
Query: 213 GIPEQTAVPPVAR-ASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSN 271
GIPEQ VPPVAR ++ GQ NPPAQT QQPAA AP SGPNANPLDLFPQGLPN+G N
Sbjct: 228 GIPEQAEVPPVARPPASAGQPANPPAQT--QQPAA-APASGPNANPLDLFPQGLPNVGGN 284
Query: 272 AGAGTLDFLRNSQQ 285
GAGTLDFLRNSQQ
Sbjct: 285 PGAGTLDFLRNSQQ 298
>gi|110735098|gb|ABG89119.1| Rad23-3Ai [synthetic construct]
Length = 365
Score = 353 bits (907), Expect = 6e-95, Method: Compositional matrix adjust.
Identities = 201/368 (54%), Positives = 244/368 (66%), Gaps = 47/368 (12%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI V P D + VKKNIE QG D YP QQ+LIH GKVLKD T+L
Sbjct: 1 MKLTVKTLKGSHFEIRVLPSDTIMAVKKNIEDSQGKDNYPCGQQLLIHNGKVLKDETSLV 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKV E F+VVML+KSK SG S A+ + TTSS P + P+TT +P P
Sbjct: 61 ENKVTEEGFLVVMLSKSK---SGGSAGQASVQPVSATTSSTNPAA--PSTTQSSPVP--- 112
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
++P PA PA + +D YGQAAS LV+GS+LE VQQI+
Sbjct: 113 -------ASPIPAQEQPA---------------AQTDTYGQAASTLVSGSSLEQMVQQIM 150
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE--QTAVP-PVARASAGGQAGNPPA 237
+MGGGSWD+ETV RALRAAYNNPERAV+YLYSGIP+ + AVP P A+ + G A
Sbjct: 151 EMGGGSWDKETVTRALRAAYNNPERAVDYLYSGIPQTAEVAVPVPEAQIAGSGAA----- 205
Query: 238 QTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANP 297
P APA + GPN++PLDLFPQ + GTL+FLRN+ QFQ LRTMV +NP
Sbjct: 206 ------PVAPA-SGGPNSSPLDLFPQETVAAAGSGDLGTLEFLRNNDQFQQLRTMVHSNP 258
Query: 298 QILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEG--GEGNVLGQLASAMPQAVTVT 355
QILQPMLQELGKQNP L+RLIQE+Q +FL+L+NEP EG GEG++ Q MP A+ VT
Sbjct: 259 QILQPMLQELGKQNPQLLRLIQENQAEFLQLVNEPYEGSDGEGDMFDQPEQEMPHAINVT 318
Query: 356 PEEREAIE 363
P E+EAI+
Sbjct: 319 PAEQEAIQ 326
>gi|226528090|ref|NP_001149553.1| LOC100283179 [Zea mays]
gi|194700938|gb|ACF84553.1| unknown [Zea mays]
gi|195627978|gb|ACG35819.1| DNA repair protein RAD23 [Zea mays]
gi|414589470|tpg|DAA40041.1| TPA: DNA repair protein RAD23 [Zea mays]
Length = 390
Score = 352 bits (903), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 217/364 (59%), Positives = 250/364 (68%), Gaps = 25/364 (6%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV VKTLKG+ F+IEV+P DKV+ VKK IE +Q YPA QQ+LIHQGKVL D TTLE
Sbjct: 1 MKVSVKTLKGSSFQIEVEPTDKVAAVKKVIENMQEQASYPADQQVLIHQGKVLSDDTTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
EN+V EN+F+V+ML ++K SSS AAPA T + APPT T P QT A A
Sbjct: 61 ENQVTENNFLVIMLRQNKGSSS------AAPA--KTTANQAPPTQTVPVVPPQTSAAPAA 112
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P VP SA A A A A D YGQAASNLVAGSNLE T+Q IL
Sbjct: 113 PAPIVPVSALAATATASAAPAVAVSTEA--------DSYGQAASNLVAGSNLEGTIQSIL 164
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
+MGGG WDR+TV+RALR AYNNPERAVEYLYSGIPEQ VP + Q NP Q
Sbjct: 165 EMGGGIWDRDTVLRALRVAYNNPERAVEYLYSGIPEQMDVP---TSPPSIQPVNPVQAAQ 221
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQIL 300
A Q AAP SGPNANPLDLFPQ LPN +NAG G LD LRN+ QFQ L +VQANPQIL
Sbjct: 222 AAQTAAP---SGPNANPLDLFPQSLPNASANAGTGNLDVLRNNVQFQNLLGLVQANPQIL 278
Query: 301 QPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGN--VLGQLASAMPQAVTVTPEE 358
QP+LQELGKQNP +M+LIQE+Q +F+R+INEP+EG E N +L Q+A A + + VTPEE
Sbjct: 279 QPLLQELGKQNPQVMQLIQENQAEFMRMINEPLEGDEENEMMLDQMADA-AETIAVTPEE 337
Query: 359 REAI 362
EAI
Sbjct: 338 NEAI 341
>gi|118486403|gb|ABK95041.1| unknown [Populus trichocarpa]
Length = 375
Score = 352 bits (902), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 193/366 (52%), Positives = 240/366 (65%), Gaps = 33/366 (9%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI+V+P D V VKKNIE VQG D YP QQ+LIH GKVLKD TTL
Sbjct: 1 MKLTVKTLKGSHFEIKVQPTDTVMGVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLV 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+NKV E+ F+VVML+KSK +++G S+ T +S + + +
Sbjct: 61 DNKVTEDGFLVVMLSKSKTAAAGTSSTQPVSTPPTTTPTSNSTPDAPAPDAQAPASKSAS 120
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
+ +A SD YGQAASNLVAGS+LE T+QQI+
Sbjct: 121 ASDTATANAQ-------------------------SDTYGQAASNLVAGSSLEQTIQQIM 155
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP-PVARASAGGQAGNPPAQT 239
D+GGG+WD+ETV RALRAAYNNPERAV+YLYSGIPE V PVAR A + +T
Sbjct: 156 DVGGGNWDKETVTRALRAAYNNPERAVDYLYSGIPETAEVAVPVARFPA-----DQGIET 210
Query: 240 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGA--GTLDFLRNSQQFQALRTMVQANP 297
A A GPN++PL++FP+ L G +AG G+LDFLRN+QQFQALR+MVQANP
Sbjct: 211 GAAPAAPALAPGGPNSSPLNMFPETLSGGGGDAGLVLGSLDFLRNNQQFQALRSMVQANP 270
Query: 298 QILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPE 357
QILQPMLQELGKQNP L+R+IQEH +FL+LINEP++G EG++ Q MP A+ VTP
Sbjct: 271 QILQPMLQELGKQNPQLLRMIQEHNAEFLQLINEPLDGSEGDIFDQPDQDMPHAINVTPA 330
Query: 358 EREAIE 363
E+EAIE
Sbjct: 331 EQEAIE 336
>gi|30409720|dbj|BAC76390.1| RAD23-like protein [Arabidopsis thaliana]
Length = 365
Score = 350 bits (898), Expect = 7e-94, Method: Compositional matrix adjust.
Identities = 199/368 (54%), Positives = 243/368 (66%), Gaps = 47/368 (12%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI V P D + VKKNIE QG D YP QQ+LIH GKVLKD T+L
Sbjct: 1 MKLTVKTLKGSHFEIRVLPSDTIMAVKKNIEDSQGKDNYPCGQQLLIHNGKVLKDETSLV 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKV E F+VVML+KSK SG S A+ + TTSS P + P+TT +P P
Sbjct: 61 ENKVTEEGFLVVMLSKSK---SGGSAGQASVQPVSATTSSTKPAA--PSTTQSSPVP--- 112
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
++P PA PA + +D YGQAAS LV+GS+LE VQQI+
Sbjct: 113 -------ASPIPAQEQPA---------------AQTDTYGQAASTLVSGSSLEQMVQQIM 150
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE--QTAVP-PVARASAGGQAGNPPA 237
+MGGGSWD+ETV RALRAAYNNPERAV+YLYSGIP+ + AVP P A+ + G A
Sbjct: 151 EMGGGSWDKETVTRALRAAYNNPERAVDYLYSGIPQTAEVAVPVPEAQIAGSGAA----- 205
Query: 238 QTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANP 297
P APA + GPN++PLDLFPQ + GTL+FLRN+ Q + LRTMV +NP
Sbjct: 206 ------PVAPA-SGGPNSSPLDLFPQETVAAAGSGDLGTLEFLRNNDQLEQLRTMVHSNP 258
Query: 298 QILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEG--GEGNVLGQLASAMPQAVTVT 355
QILQPMLQELGKQNP L+RLIQE+Q +FL+L+NEP EG GEG++ Q MP A+ VT
Sbjct: 259 QILQPMLQELGKQNPQLLRLIQENQAEFLQLVNEPYEGSDGEGDMFDQPEQEMPHAINVT 318
Query: 356 PEEREAIE 363
P E+EAI+
Sbjct: 319 PAEQEAIQ 326
>gi|414885365|tpg|DAA61379.1| TPA: hypothetical protein ZEAMMB73_350633 [Zea mays]
Length = 382
Score = 350 bits (897), Expect = 8e-94, Method: Compositional matrix adjust.
Identities = 211/364 (57%), Positives = 249/364 (68%), Gaps = 33/364 (9%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV VKTLKG+ F IEV P DKV+DVKK IE++Q YPA QQ+LIHQGKVLKD TTLE
Sbjct: 1 MKVSVKTLKGSSFHIEVDPTDKVADVKKVIESIQEQASYPADQQVLIHQGKVLKDDTTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
EN+V EN+F+V+ML ++K SSS AAPA T + AP T T P T
Sbjct: 61 ENQVVENNFLVIMLRQNKGSSS------AAPA--KVTANQAPSTQTVPAT---------- 102
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
PPQ+ AP A A A A VS+ +D YGQA SNLVAGSNLE T++ IL
Sbjct: 103 PPQTSAAPDA--PAPIAPAATATASAAPAVAVSTEADSYGQATSNLVAGSNLEGTIKSIL 160
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
+MGGG+WDR+TV+RALRAAYNNPERAVEYLYSGIPEQ VP A + P Q
Sbjct: 161 EMGGGTWDRDTVLRALRAAYNNPERAVEYLYSGIPEQMEVP------APPPSSQPVDPVQ 214
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQIL 300
A QPA +GPNANPLDLFPQ LPN +NA G LD LRN+ QFQ L +VQANPQIL
Sbjct: 215 AVQPA----QAGPNANPLDLFPQSLPNDSANANTGNLDVLRNNSQFQNLLGLVQANPQIL 270
Query: 301 QPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGN--VLGQLASAMPQAVTVTPEE 358
QP+LQEL KQNP +M+LIQE+Q +F+RLI+EP+EG E N +L Q+A A + + VTPEE
Sbjct: 271 QPLLQELRKQNPRVMQLIQENQAEFMRLISEPLEGDEENEMMLDQMADAT-ETIAVTPEE 329
Query: 359 REAI 362
EAI
Sbjct: 330 NEAI 333
>gi|224101717|ref|XP_002312393.1| predicted protein [Populus trichocarpa]
gi|222852213|gb|EEE89760.1| predicted protein [Populus trichocarpa]
Length = 333
Score = 347 bits (891), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 175/209 (83%), Positives = 183/209 (87%), Gaps = 6/209 (2%)
Query: 158 VYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQ 217
VYGQAAS+LVAGSNLE VQQILDMGGG+WDR+TV+RALRAAYNNPERA+EYLYSGIPEQ
Sbjct: 91 VYGQAASSLVAGSNLEVAVQQILDMGGGTWDRDTVVRALRAAYNNPERAIEYLYSGIPEQ 150
Query: 218 TAVPPVARASAGGQAGNPPAQTQAQQPA--APAPTSGPNANPLDLFPQGLPNMGSNAG-A 274
PPVA GGQA P AQ Q Q P A P+ GPNANPLDLFPQGLPN+GS AG A
Sbjct: 151 AEAPPVAHMPLGGQA--PAAQPQ-QHPTQTAAVPSGGPNANPLDLFPQGLPNVGSGAGGA 207
Query: 275 GTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVE 334
GTLDFLRNSQQFQALR MVQANPQILQPMLQELGKQNPHLMRLIQEHQ DFLRLINEPVE
Sbjct: 208 GTLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPHLMRLIQEHQDDFLRLINEPVE 267
Query: 335 GGEGNVLGQLASAMPQAVTVTPEEREAIE 363
GEGNVLGQLA+AMPQAVTVTPEEREAIE
Sbjct: 268 SGEGNVLGQLAAAMPQAVTVTPEEREAIE 296
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 63/101 (62%), Positives = 76/101 (75%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTLKG+ F+IEVKPED V+DVKK IET QG VYPA QQMLIHQ KVLKD TTL+
Sbjct: 1 MRIFVKTLKGSTFDIEVKPEDTVADVKKKIETAQGVAVYPAEQQMLIHQAKVLKDNTTLD 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSA 101
ENK+ ENSFVV+ML+K + +S S S QA ++ A
Sbjct: 61 ENKIVENSFVVIMLSKVRFASLVLSFESYYVYGQAASSLVA 101
>gi|297842761|ref|XP_002889262.1| hypothetical protein ARALYDRAFT_316857 [Arabidopsis lyrata subsp.
lyrata]
gi|297335103|gb|EFH65521.1| hypothetical protein ARALYDRAFT_316857 [Arabidopsis lyrata subsp.
lyrata]
Length = 365
Score = 347 bits (891), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 201/367 (54%), Positives = 243/367 (66%), Gaps = 45/367 (12%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI V P D + VKKNIE QG + YP QQ+LIH GKVLKD T+L
Sbjct: 1 MKLTVKTLKGSHFEIRVLPSDTIMAVKKNIEDSQGKNNYPCGQQLLIHNGKVLKDETSLV 60
Query: 61 ENKVAENSFVVVMLTKSKVS-SSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTV 119
ENKV E F+VVML+KSK + S+G S+V A A TTSS P + P+TT P
Sbjct: 61 ENKVTEEGFLVVMLSKSKTAGSAGQSSVQPASA----TTSSTKPET--PSTTQSIAVP-- 112
Query: 120 APPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQI 179
++P A PA + +D YGQAAS LV+GS+LE VQQI
Sbjct: 113 --------ASPITAQEQPA---------------AQTDTYGQAASTLVSGSSLEQMVQQI 149
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQ-AGNPPAQ 238
++MGGGSWD+ETV RALRAAYNNPERAV+YLYSGIPE VA A G Q AG+ A
Sbjct: 150 MEMGGGSWDKETVTRALRAAYNNPERAVDYLYSGIPE---TAEVAVAVPGAQMAGSGAA- 205
Query: 239 TQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQ 298
P APA + GPN++PLDLFPQ + GTL+FLRN+ QFQ LRTMV +NPQ
Sbjct: 206 -----PVAPA-SGGPNSSPLDLFPQETVAAAGSGDLGTLEFLRNNDQFQQLRTMVHSNPQ 259
Query: 299 ILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEG--GEGNVLGQLASAMPQAVTVTP 356
ILQPMLQELGKQNP L+RLIQE+Q +FL+L+NEP EG G+ ++L Q MP A+ VTP
Sbjct: 260 ILQPMLQELGKQNPQLLRLIQENQAEFLQLVNEPYEGSDGDADMLDQPEQEMPHAINVTP 319
Query: 357 EEREAIE 363
E+EAI+
Sbjct: 320 AEQEAIQ 326
>gi|356550681|ref|XP_003543713.1| PREDICTED: putative DNA repair protein RAD23-1-like isoform 1
[Glycine max]
Length = 367
Score = 346 bits (888), Expect = 9e-93, Method: Compositional matrix adjust.
Identities = 197/366 (53%), Positives = 240/366 (65%), Gaps = 43/366 (11%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI V+P D + VKKNIE VQG D YP QQ+LIH GKVLKD TTL
Sbjct: 1 MKLTVKTLKGSHFEIRVQPSDTIMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLS 60
Query: 61 ENKVAENSFVVVMLTKSK-VSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTV 119
+NKV+E+ F+VVML+K K + S+G S+ A S PPT TV
Sbjct: 61 DNKVSEDGFLVVMLSKGKTLGSAGISSTQFA---------SNPPT-------------TV 98
Query: 120 APPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQI 179
+ P S P P A A A + ++ YGQAASNLVAGSNLE T+QQ+
Sbjct: 99 STPNSTP-------LVQPQSANNNASATDVTTTNVTTNTYGQAASNLVAGSNLEQTIQQL 151
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP--EQTAVPPVARASAGGQAGNPPA 237
+DMGGGSWDR+TV ALRAAYNNPERAV+YLYSGIP + AVP A P +
Sbjct: 152 MDMGGGSWDRDTVTCALRAAYNNPERAVDYLYSGIPVAAEIAVPA---------ASYPIS 202
Query: 238 QTQAQQPAAPAPTSG-PNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQAN 296
QT A+ G PN++PL++FPQ + G+ A G+LDFLRN+ QFQALR+MVQ+N
Sbjct: 203 QTTETGGASVGAVPGVPNSSPLNMFPQETIS-GAGAEIGSLDFLRNNPQFQALRSMVQSN 261
Query: 297 PQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTP 356
PQILQP+LQELGKQNP L+ LIQEH +FL+LINEPVEG EG++ Q MP A+ VTP
Sbjct: 262 PQILQPVLQELGKQNPSLLTLIQEHHAEFLQLINEPVEGSEGDIFDQPEQDMPHAINVTP 321
Query: 357 EEREAI 362
E+EAI
Sbjct: 322 AEQEAI 327
>gi|298204749|emb|CBI25247.3| unnamed protein product [Vitis vinifera]
Length = 399
Score = 345 bits (886), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 200/369 (54%), Positives = 244/369 (66%), Gaps = 15/369 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI V+P D V VKKNIE VQG D YP QQ+LIH GKVLKD TTL
Sbjct: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLV 60
Query: 61 ENKVAENSFVVVMLTKSK----VSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPA 116
ENKV E+ F+VVML+KSK +S A + S T + AP + P +
Sbjct: 61 ENKVTEDGFLVVMLSKSKSIGATGTSSAQSASTPAPAAIPTPAPAPIPTPAPAPIATPAP 120
Query: 117 PTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATV 176
+A P P AP A AP A S ++D YGQAASN+V+ ++LE T+
Sbjct: 121 APIATPAPAPNPTAAAEAPVNAQAPRSISTSEVATDSVLADTYGQAASNIVSANHLEQTI 180
Query: 177 QQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP-PVARASAGGQAGNP 235
QQI+D+GGG+WD+ETV RALRAAYNNPERAV+YLYSGIPE V PVA
Sbjct: 181 QQIMDIGGGTWDKETVTRALRAAYNNPERAVDYLYSGIPEAAEVAVPVAHF--------- 231
Query: 236 PAQTQAQQPAAPAPTSG-PNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQ 294
PA + A AP SG PN++PL++FPQ + + G G+L+FLRN+ QFQALR MVQ
Sbjct: 232 PADQETGGAAPAAPASGVPNSSPLNMFPQETLSGAAGGGLGSLEFLRNNHQFQALRAMVQ 291
Query: 295 ANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTV 354
ANPQILQPMLQELGKQNPHL+RLIQEH +FL+LINEP+EG EG++ Q +P A+ V
Sbjct: 292 ANPQILQPMLQELGKQNPHLLRLIQEHHAEFLQLINEPLEGSEGDIFDQPEQELPHAINV 351
Query: 355 TPEEREAIE 363
TP E+EAIE
Sbjct: 352 TPAEQEAIE 360
>gi|302756389|ref|XP_002961618.1| hypothetical protein SELMODRAFT_77427 [Selaginella moellendorffii]
gi|300170277|gb|EFJ36878.1| hypothetical protein SELMODRAFT_77427 [Selaginella moellendorffii]
Length = 367
Score = 345 bits (885), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 209/369 (56%), Positives = 248/369 (67%), Gaps = 47/369 (12%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG HF+++V+P D V VKK IE +QG + +P +QQ+LIHQGKVLKD TT++
Sbjct: 1 MKISVKTLKGNHFDLDVQPADTVIAVKKQIEDLQGKESFPCAQQLLIHQGKVLKDETTMD 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKV+EN F+VVMLTKSK +AAP T+S A P+ST
Sbjct: 61 ENKVSENGFLVVMLTKSK---------TAAP-----TSSGATPSST-------------- 92
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P AAPA PAPA ++ SDVYGQAASNLVAG+ LE T+QQ++
Sbjct: 93 ----------PQAAPATVTTTPSPAPPAPA-PTATSDVYGQAASNLVAGTGLEQTIQQLV 141
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
DMGGGSWDR++ RALRAAYNNPERAVEYLYSGIP+ PPVARA A +
Sbjct: 142 DMGGGSWDRDSCARALRAAYNNPERAVEYLYSGIPDVADAPPVARAPPAAPAAATAPPSA 201
Query: 241 AQQPAAPAP--TSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQ 298
A PAP T GPNA PLDLFPQ G G LDFLRN+ QFQALRTMVQ NPQ
Sbjct: 202 APTGGVPAPAATGGPNAVPLDLFPQVRTPPAGGGGNGALDFLRNNAQFQALRTMVQQNPQ 261
Query: 299 ILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGE----GNVLGQLASAMPQAVTV 354
+LQPMLQELG+QNP L+RLI E+ +FLRLI+E GGE G++LGQLA AMPQ+++V
Sbjct: 262 LLQPMLQELGRQNPQLLRLINENHVEFLRLISEA--GGENPEAGDLLGQLAGAMPQSISV 319
Query: 355 TPEEREAIE 363
TPEEREAIE
Sbjct: 320 TPEEREAIE 328
>gi|356550683|ref|XP_003543714.1| PREDICTED: putative DNA repair protein RAD23-1-like isoform 2
[Glycine max]
Length = 353
Score = 345 bits (885), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 194/366 (53%), Positives = 236/366 (64%), Gaps = 57/366 (15%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI V+P D + VKKNIE VQG D YP QQ+LIH GKVLKD TTL
Sbjct: 1 MKLTVKTLKGSHFEIRVQPSDTIMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLS 60
Query: 61 ENKVAENSFVVVMLTKSK-VSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTV 119
+NKV+E+ F+VVML+K K + S+G S+ A N PPT TV
Sbjct: 61 DNKVSEDGFLVVMLSKGKTLGSAGISSTQACCFN--------PPT-------------TV 99
Query: 120 APPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQI 179
+ P S P P ++ YGQAASNLVAGSNLE T+QQ+
Sbjct: 100 STPNSTPLVQP----------------------HVTTNTYGQAASNLVAGSNLEQTIQQL 137
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP--EQTAVPPVARASAGGQAGNPPA 237
+DMGGGSWDR+TV ALRAAYNNPERAV+YLYSGIP + AVP A P +
Sbjct: 138 MDMGGGSWDRDTVTCALRAAYNNPERAVDYLYSGIPVAAEIAVPA---------ASYPIS 188
Query: 238 QTQAQQPAAPAPTSG-PNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQAN 296
QT A+ G PN++PL++FPQ + G+ A G+LDFLRN+ QFQALR+MVQ+N
Sbjct: 189 QTTETGGASVGAVPGVPNSSPLNMFPQETIS-GAGAEIGSLDFLRNNPQFQALRSMVQSN 247
Query: 297 PQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTP 356
PQILQP+LQELGKQNP L+ LIQEH +FL+LINEPVEG EG++ Q MP A+ VTP
Sbjct: 248 PQILQPVLQELGKQNPSLLTLIQEHHAEFLQLINEPVEGSEGDIFDQPEQDMPHAINVTP 307
Query: 357 EEREAI 362
E+EAI
Sbjct: 308 AEQEAI 313
>gi|302762537|ref|XP_002964690.1| hypothetical protein SELMODRAFT_82644 [Selaginella moellendorffii]
gi|300166923|gb|EFJ33528.1| hypothetical protein SELMODRAFT_82644 [Selaginella moellendorffii]
Length = 385
Score = 343 bits (880), Expect = 8e-92, Method: Compositional matrix adjust.
Identities = 202/370 (54%), Positives = 251/370 (67%), Gaps = 31/370 (8%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG HF+++V+P D V VKK IE +QG + +P +QQ+LIHQGKVLKD TT++
Sbjct: 1 MKISVKTLKGNHFDLDVQPADTVIAVKKQIEDLQGKESFPCAQQLLIHQGKVLKDETTMD 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQ-TPAPTV 119
ENKV+EN F+VVMLTKS+ SSG + S++ ++ + + S++ + + S+ +
Sbjct: 61 ENKVSENGFLVVMLTKSR--SSGIARCSSSSSSSSSSPSTSSSSGSGCYAVSKFSLLHLF 118
Query: 120 APPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQI 179
S+ PPAA SDVYGQAASNLVAG+ LE T+QQ+
Sbjct: 119 WCSLSLVFLRRPPAA--------------------TSDVYGQAASNLVAGTGLEQTIQQL 158
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 239
+DMGGGSWDR++ +RALRAAYNNPERAVEYLYSGIP+ PPVARA A T
Sbjct: 159 VDMGGGSWDRDSCVRALRAAYNNPERAVEYLYSGIPDVADAPPVARAPPAAPAAATAPPT 218
Query: 240 QAQQPAAPAP--TSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANP 297
A PAP T GPNA PLDLFPQ G G LDFLRN+ QFQALRTMVQ NP
Sbjct: 219 AAPTGGVPAPAATGGPNAVPLDLFPQVRTPPAGGGGNGALDFLRNNAQFQALRTMVQQNP 278
Query: 298 QILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGE----GNVLGQLASAMPQAVT 353
Q+LQPMLQELG+QNP L+RLI E+ +FLRLI+E GGE G++LGQLA AMPQ+++
Sbjct: 279 QLLQPMLQELGRQNPQLLRLINENHVEFLRLISEA--GGENPEAGDLLGQLAGAMPQSIS 336
Query: 354 VTPEEREAIE 363
VTPEEREAIE
Sbjct: 337 VTPEEREAIE 346
>gi|359483130|ref|XP_002270323.2| PREDICTED: putative DNA repair protein RAD23-1-like [Vitis
vinifera]
Length = 400
Score = 343 bits (879), Expect = 9e-92, Method: Compositional matrix adjust.
Identities = 196/368 (53%), Positives = 242/368 (65%), Gaps = 12/368 (3%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI V+P D V VKKNIE VQG D YP QQ+LIH GKVLKD TTL
Sbjct: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLV 60
Query: 61 ENKVAENSFVVVMLTKSK----VSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPA 116
ENKV E+ F+VVML+KSK +S A + S T + AP + P +
Sbjct: 61 ENKVTEDGFLVVMLSKSKSIGATGTSSAQSASTPAPAAIPTPAPAPIPTPAPAPIATPAP 120
Query: 117 PTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATV 176
+A P P AP A AP A S ++D YGQAASN+V+ ++LE T+
Sbjct: 121 APIATPAPAPNPTAAAEAPVNAQAPRSISTSEVATDSVLADTYGQAASNIVSANHLEQTI 180
Query: 177 QQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP-PVARASAGGQAGNP 235
QQI+D+GGG+WD+ETV RALRAAYNNPERAV+YLYSGIPE V PVA A
Sbjct: 181 QQIMDIGGGTWDKETVTRALRAAYNNPERAVDYLYSGIPEAAEVAVPVAHFPA------- 233
Query: 236 PAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQA 295
+T + A + PN++PL++FPQ + + G G+L+FLRN+ QFQALR MVQA
Sbjct: 234 DQETGSGAAPAAPASGVPNSSPLNMFPQETLSGAAGGGLGSLEFLRNNHQFQALRAMVQA 293
Query: 296 NPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVT 355
NPQILQPMLQELGKQNPHL+RLIQEH +FL+LINEP+EG EG++ Q +P A+ VT
Sbjct: 294 NPQILQPMLQELGKQNPHLLRLIQEHHAEFLQLINEPLEGSEGDIFDQPEQELPHAINVT 353
Query: 356 PEEREAIE 363
P E+EAIE
Sbjct: 354 PAEQEAIE 361
>gi|224073098|ref|XP_002303970.1| predicted protein [Populus trichocarpa]
gi|222841402|gb|EEE78949.1| predicted protein [Populus trichocarpa]
Length = 358
Score = 342 bits (878), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 197/366 (53%), Positives = 235/366 (64%), Gaps = 50/366 (13%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI+V P D + VKKNIE QG D YP QQ+LIH GKVLKD TTL
Sbjct: 1 MKLTVKTLKGSHFEIKVHPTDTIMGVKKNIEDAQGKDNYPCGQQLLIHNGKVLKDETTLA 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+NKV E+ F+VVML+KSK ++G T+S P T
Sbjct: 61 DNKVTEDGFLVVMLSKSKTGTAG--------------------------TSSTQPVSTPP 94
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
S P P A A A SD YGQAASNLVAGSNLE T+QQI+
Sbjct: 95 TTTPTSISTPAPDAQAFAQ----------------SDTYGQAASNLVAGSNLEQTLQQIM 138
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP-PVARASAGGQAGNPPAQT 239
DMGGG+WD+ETV RALRAAYNNPERAV+YLYSGIPE V PVAR A + +T
Sbjct: 139 DMGGGTWDKETVTRALRAAYNNPERAVDYLYSGIPETAEVAVPVARFPA-----DQATET 193
Query: 240 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAG--TLDFLRNSQQFQALRTMVQANP 297
A A PN++PL++FP+ + G AG G +LDFLRN+QQFQALR+MVQANP
Sbjct: 194 GAAPAAPAPAFGAPNSSPLNMFPETISGGGGGAGGGLGSLDFLRNNQQFQALRSMVQANP 253
Query: 298 QILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPE 357
QILQPMLQELGKQNP L+R+IQEH +FL+LINEP++G EG++ Q MP A+ VTP
Sbjct: 254 QILQPMLQELGKQNPQLLRIIQEHHAEFLQLINEPLDGSEGDIFDQPDQDMPHAINVTPA 313
Query: 358 EREAIE 363
E+EAIE
Sbjct: 314 EQEAIE 319
>gi|449439755|ref|XP_004137651.1| PREDICTED: putative DNA repair protein RAD23-1-like [Cucumis
sativus]
Length = 358
Score = 342 bits (878), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 198/368 (53%), Positives = 232/368 (63%), Gaps = 54/368 (14%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI V+ D V VKKNIE VQG D YP QQ+LIH GKVLKD +TL
Sbjct: 1 MKLTVKTLKGSHFEIRVQLTDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDESTLA 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKV+E F+VVML+KSK T+ SA +STQP
Sbjct: 61 ENKVSEEGFLVVMLSKSK------------------TSVSAGQSSTQPAQN--------- 93
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
PP A P + PA P S +D YGQAASNLVAG+NLE TVQQ++
Sbjct: 94 ---------PPVAQPVLSSTPAAQVTP-----SVQTDTYGQAASNLVAGNNLEQTVQQLM 139
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP-PVARASAGGQAGNPPAQT 239
DMGGG+WDRETV+RALRAAYNNPERAV+YLYSGIPE V PV R +G Q
Sbjct: 140 DMGGGNWDRETVVRALRAAYNNPERAVDYLYSGIPESAEVAVPVGRFGSG--------QA 191
Query: 240 QAQQPAAPAPTSG-PNANPLDLFPQ---GLPNMGSNAGAGTLDFLRNSQQFQALRTMVQA 295
+ PAP SG PN PL++FPQ + G G+L+FLRN+ QFQALRTMV
Sbjct: 192 TETDASVPAPVSGAPNTAPLNMFPQEALSAGSGGGGGNLGSLEFLRNNPQFQALRTMVHT 251
Query: 296 NPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVT 355
NPQILQPMLQELGKQNP L+RLIQ+H +FL+LINEPV+ EG + Q MP A+ VT
Sbjct: 252 NPQILQPMLQELGKQNPQLLRLIQDHHAEFLQLINEPVDNFEGEMFEQAEPDMPHAINVT 311
Query: 356 PEEREAIE 363
P E+ AIE
Sbjct: 312 PAEQAAIE 319
>gi|326528949|dbj|BAJ97496.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 420
Score = 342 bits (876), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 222/384 (57%), Positives = 267/384 (69%), Gaps = 32/384 (8%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKGT FEIE PE V +VK+ IE+ QG +VYPA Q M+I+QGK+LKD TTL+
Sbjct: 1 MKLNVKTLKGTSFEIEATPESSVGEVKRIIESAQGQNVYPADQLMIIYQGKILKDDTTLD 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
NKVAENSF+V+ML+K K SSSGAS+ S AP +Q+Q P T P + P P +
Sbjct: 61 ANKVAENSFLVIMLSKPKASSSGASSASKAPVSQSQ-----PAT---PVAAATPPVPVAS 112
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVS-----DVYGQAASNLVAGSNLEAT 175
+S P A P AA PAP A A + P ++V+ DVY QAASNLV+G LE T
Sbjct: 113 AARSPPSQA-PVAASEPAPPSAQPSAVSDTPAAAVTASGDADVYSQAASNLVSGGILEQT 171
Query: 176 VQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQT-AVPPVARASAGGQAGN 234
VQQILDMGGG+W+R+ V+RALRAAYNNPERA++YLYSGIPE A P + QA N
Sbjct: 172 VQQILDMGGGTWERDMVVRALRAAYNNPERAIDYLYSGIPESVEAPPVARAPAPAQQAQN 231
Query: 235 PPAQTQAQQPAAPAP--------TSGPNANPLDLFPQGLPN------MGSNAGAGTLDFL 280
A +QAQ AAP P ++GPNANPL+LFPQG+P+ G AGAG LD L
Sbjct: 232 LQAPSQAQ--AAPLPAVQPSGGVSAGPNANPLNLFPQGVPSGGANAGAGVGAGAGALDAL 289
Query: 281 RNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINE-PVEGGEGN 339
R QFQAL +VQANPQILQPMLQELGKQNP ++RLIQE+Q +FLRL+NE P G GN
Sbjct: 290 RQLPQFQALLALVQANPQILQPMLQELGKQNPQILRLIQENQAEFLRLVNETPESGAGGN 349
Query: 340 VLGQLASAMPQAVTVTPEEREAIE 363
+LG LA+ MPQAV VTPEEREAI+
Sbjct: 350 ILGALAAQMPQAVQVTPEEREAIQ 373
>gi|15221013|ref|NP_173070.1| putative DNA repair protein RAD23-2 [Arabidopsis thaliana]
gi|73620992|sp|Q84L32.2|RD23B_ARATH RecName: Full=Putative DNA repair protein RAD23-2; AltName:
Full=RAD23-like protein 2; Short=AtRAD23-2
gi|110735100|gb|ABG89120.1| Rad23-3B [synthetic construct]
gi|332191297|gb|AEE29418.1| putative DNA repair protein RAD23-2 [Arabidopsis thaliana]
Length = 368
Score = 341 bits (874), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 188/365 (51%), Positives = 236/365 (64%), Gaps = 38/365 (10%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI V P D + VKKNIE Q D YP QQ+LIH GKVLKD TTL
Sbjct: 1 MKLTVKTLKGSHFEIRVLPTDTIMAVKKNIEDSQSKDNYPCGQQLLIHNGKVLKDETTLV 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKV E F+VVML+KSK +SS A P+ ++ T+T +++ AP+
Sbjct: 61 ENKVTEEGFLVVMLSKSKTASS------AGPS-----STQPTSTTTSTISSTTLAAPSTT 109
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
+VP S P P ++ SD YGQAAS LV+GS++E VQQI+
Sbjct: 110 QSIAVPASNSTPVQEQP---------------TAQSDTYGQAASTLVSGSSIEQMVQQIM 154
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
+MGGGSWD+ETV RALRAAYNNPERAV+YLYSGIPE +P + G
Sbjct: 155 EMGGGSWDKETVTRALRAAYNNPERAVDYLYSGIPETVTIPATNLSGVGS---------- 204
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQIL 300
++ AP P+ GPN++PLDLFPQ + + GTL+FLR + QFQ LR+MV +NPQIL
Sbjct: 205 GRELTAPPPSGGPNSSPLDLFPQEAVSDAAGGDLGTLEFLRGNDQFQQLRSMVNSNPQIL 264
Query: 301 QPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNV--LGQLASAMPQAVTVTPEE 358
QPMLQELGKQNP L+RLIQE+Q +FL+L+NEP EG +G+V Q MP +V VTPEE
Sbjct: 265 QPMLQELGKQNPQLLRLIQENQAEFLQLLNEPYEGSDGDVDIFDQPDQEMPHSVNVTPEE 324
Query: 359 REAIE 363
+E+IE
Sbjct: 325 QESIE 329
>gi|326501072|dbj|BAJ98767.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 414
Score = 340 bits (872), Expect = 7e-91, Method: Compositional matrix adjust.
Identities = 220/384 (57%), Positives = 266/384 (69%), Gaps = 32/384 (8%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKGT FEIE PE V +VK+ IE+ QG +VYPA Q M+I+QGK+LKD TTL+
Sbjct: 1 MKLNVKTLKGTSFEIEATPESSVGEVKRIIESAQGQNVYPADQLMIIYQGKILKDDTTLD 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
NKVAENSF+V+ML+K K SSSGAS+ S AP +Q+Q + P + P P +
Sbjct: 61 ANKVAENSFLVIMLSKPKASSSGASSASKAPVSQSQPAT--------PVAAATPPVPVAS 112
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVS-----DVYGQAASNLVAGSNLEAT 175
+S P A P AA PAP A A + P ++V+ DVY QAASNLV+G LE T
Sbjct: 113 AARSPPSQA-PVAASEPAPPSAQPSAVSDTPAAAVTASGDADVYSQAASNLVSGGILEQT 171
Query: 176 VQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQT-AVPPVARASAGGQAGN 234
VQQILDMGGG+W+R+ V+RALRAAYNNPERA++YLYSGIPE A P + QA N
Sbjct: 172 VQQILDMGGGTWERDMVVRALRAAYNNPERAIDYLYSGIPESVEAPPVARAPAPAQQAQN 231
Query: 235 PPAQTQAQQPAAPAP--------TSGPNANPLDLFPQGLPN------MGSNAGAGTLDFL 280
A +QAQ AAP P ++GPNANPL+LFPQG+P+ G AGAG LD L
Sbjct: 232 LQAPSQAQ--AAPLPAVQPSGGVSAGPNANPLNLFPQGVPSGGANAGAGVGAGAGALDAL 289
Query: 281 RNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINE-PVEGGEGN 339
R QFQAL +VQANPQILQPMLQELGKQNP ++RLIQE+Q +FLRL+NE P G GN
Sbjct: 290 RQLPQFQALLALVQANPQILQPMLQELGKQNPQILRLIQENQAEFLRLVNETPESGAGGN 349
Query: 340 VLGQLASAMPQAVTVTPEEREAIE 363
+LG LA+ MPQAV VTPEEREAI+
Sbjct: 350 ILGALAAQMPQAVQVTPEEREAIQ 373
>gi|449459440|ref|XP_004147454.1| PREDICTED: putative DNA repair protein RAD23-1-like [Cucumis
sativus]
Length = 374
Score = 340 bits (871), Expect = 8e-91, Method: Compositional matrix adjust.
Identities = 199/373 (53%), Positives = 244/373 (65%), Gaps = 48/373 (12%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HF+IEV+P D V VKKNIE VQG D YP SQQ+LIH GKVLKD TTL
Sbjct: 1 MKLTVKTLKGSHFQIEVQPTDTVLGVKKNIENVQGKDSYPCSQQLLIHNGKVLKDETTLT 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENK+ E+ F+VVML+KSK AP + +++ T T +
Sbjct: 61 ENKITEDGFLVVMLSKSK-----------APGSTGSSSTQTTTIVPTTTPTPNS------ 103
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
S+PE+ PA PA + A + P ++ D YGQAASNLV+G+NLE T+Q+I+
Sbjct: 104 --TSIPEA---PAQPAASRNVAISDVPT---ANAQIDTYGQAASNLVSGNNLEQTIQEIM 155
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP-PVAR------ASAGGQAG 233
DMGGGSWDRETV RALRAAYNNPERAV+YLYSGIPE V PVAR AGG
Sbjct: 156 DMGGGSWDRETVTRALRAAYNNPERAVDYLYSGIPETAEVAAPVARPPTGQPIDAGG--- 212
Query: 234 NPPAQTQAQQPAAPAPTSGPNANPLDLFPQ---GLPNMGSNAGAGTLDFLRNSQQFQALR 290
AP + GPN++PL++FPQ G G+L+FLRN+ QFQALR
Sbjct: 213 ----------ATAPPVSGGPNSSPLNMFPQESLAAAAGGGGGSLGSLEFLRNNPQFQALR 262
Query: 291 TMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQ 350
+MVQANPQILQ MLQELGKQNP L+RLIQ+HQ +FL+LINEP+EG EG++ Q MP
Sbjct: 263 SMVQANPQILQAMLQELGKQNPQLLRLIQDHQAEFLQLINEPLEGFEGDLFDQPDQDMPH 322
Query: 351 AVTVTPEEREAIE 363
A+ VTP E++AIE
Sbjct: 323 AINVTPAEQQAIE 335
>gi|297844544|ref|XP_002890153.1| hypothetical protein ARALYDRAFT_312599 [Arabidopsis lyrata subsp.
lyrata]
gi|297335995|gb|EFH66412.1| hypothetical protein ARALYDRAFT_312599 [Arabidopsis lyrata subsp.
lyrata]
Length = 364
Score = 339 bits (870), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 194/365 (53%), Positives = 234/365 (64%), Gaps = 42/365 (11%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI V+P D + VKKNIE Q D YP QQ+LIH GKVLKD TTL
Sbjct: 1 MKLTVKTLKGSHFEIRVQPTDTIMAVKKNIEDSQSKDNYPCGQQLLIHNGKVLKDETTLV 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKV E F+VVML+KSK T SSA P+S QPT+T+ +
Sbjct: 61 ENKVTEEGFLVVMLSKSK------------------TPSSAGPSSIQPTSTTTSTISPTP 102
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
+AP A PA P PA SD YGQAAS LV+GS++E VQQI+
Sbjct: 103 L------AAPSIAVPASNSTPVQEQLPAQ------SDTYGQAASTLVSGSSVEQMVQQIM 150
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
+MGGGSWD+ETV RALRAAYNNPERAV+YLYSGIPE A+P + G A
Sbjct: 151 EMGGGSWDKETVTRALRAAYNNPERAVDYLYSGIPETVAIPATNLSGVGSGA-------- 202
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQIL 300
+ AP + GPN++PLDLFPQ + GTL+FLR + QFQ LR+MV +NPQIL
Sbjct: 203 --ELTAPPASGGPNSSPLDLFPQEAVSDAGGGDLGTLEFLRGNDQFQQLRSMVNSNPQIL 260
Query: 301 QPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEG--NVLGQLASAMPQAVTVTPEE 358
QPMLQELGKQNP L+RLIQE+Q +FL+L+NEP EG +G ++ Q MP AV VTPEE
Sbjct: 261 QPMLQELGKQNPQLLRLIQENQAEFLQLLNEPYEGSDGDMDIFDQPEQEMPHAVNVTPEE 320
Query: 359 REAIE 363
+EAI+
Sbjct: 321 QEAIQ 325
>gi|30409722|dbj|BAC76391.1| RAD23-like protein [Arabidopsis thaliana]
Length = 366
Score = 334 bits (856), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 187/365 (51%), Positives = 235/365 (64%), Gaps = 40/365 (10%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI V P + VKKNIE Q D YP QQ+LIH GKVLKD TTL
Sbjct: 1 MKLTVKTLKGSHFEIRVLP--TIMAVKKNIEDSQSKDNYPCGQQLLIHNGKVLKDETTLV 58
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKV E F+VVML+KSK +SS A P+ ++ T+T +++ AP+
Sbjct: 59 ENKVTEEGFLVVMLSKSKTASS------AGPS-----STQPTSTTTSTISSTTLAAPSTT 107
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
+VP S P P ++ SD YGQAAS LV+GS++E VQQI+
Sbjct: 108 QSIAVPASNSTPVQEQP---------------TAQSDTYGQAASTLVSGSSIEQMVQQIM 152
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
+MGGGSWD+ETV RALRAAYNNPERAV+YLYSGIPE +P + G
Sbjct: 153 EMGGGSWDKETVTRALRAAYNNPERAVDYLYSGIPETVTIPATNLSGVGS---------- 202
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQIL 300
++ AP P+ GPN++PLDLFPQ + + GTL+FLR + QFQ LR+MV +NPQIL
Sbjct: 203 GRELTAPPPSGGPNSSPLDLFPQEAVSDAAGGDLGTLEFLRGNDQFQQLRSMVNSNPQIL 262
Query: 301 QPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNV--LGQLASAMPQAVTVTPEE 358
QPMLQELGKQNP L+RLIQE+Q +FL+L+NEP EG +G+V Q MP +V VTPEE
Sbjct: 263 QPMLQELGKQNPQLLRLIQENQAEFLQLLNEPYEGSDGDVDIFDQPDQEMPHSVNVTPEE 322
Query: 359 REAIE 363
+E+IE
Sbjct: 323 QESIE 327
>gi|168057528|ref|XP_001780766.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162667784|gb|EDQ54405.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 396
Score = 332 bits (850), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 207/370 (55%), Positives = 240/370 (64%), Gaps = 20/370 (5%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG HF++ V ++ VS VK+ IE +QG D +P +QQ+LIHQGKVLKD TT+
Sbjct: 1 MKISVKTLKGNHFDLHVAEDELVSSVKRKIEELQGKDAFPCAQQLLIHQGKVLKDETTMA 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+NKVAEN F+VVMLTK ++ S T +S T
Sbjct: 61 DNKVAENGFLVVMLTKVRLHES-------------NTGTSRWRTRVVAPAAPAPAPAPAP 107
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
S P A P APA A A APA A D YGQAASNLVAGS LE+TVQQI+
Sbjct: 108 ASTSTPAPAAPAPAPAAVAATPGAGAPAVALCRGTGDGYGQAASNLVAGSALESTVQQIM 167
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP-PVARASAGGQAGNPPAQT 239
DMGGG+WDR+TV+RALRAA+NNPERAVEYLYSGIPE VP PVAR G A A
Sbjct: 168 DMGGGTWDRDTVLRALRAAFNNPERAVEYLYSGIPEAAEVPAPVARGPPAGGAPVAAAPA 227
Query: 240 QAQQPAAPAPTS---GPNANPLDLFPQGLP-NMGSNAGAGTLDFLRNSQQFQALRTMVQA 295
A A + GPNA PLDLFPQG+P G AG G LDFLRN+ QFQALRTMVQA
Sbjct: 228 GPGAAGAAAVAANPQGPNAAPLDLFPQGMPGAGGGGAGLGALDFLRNNPQFQALRTMVQA 287
Query: 296 NPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLIN--EPVEGGEGNVLGQLASAMPQAVT 353
NPQILQPMLQELGKQNP L+RLI E+Q +FLRLIN G+ +G+LA PQ+V
Sbjct: 288 NPQILQPMLQELGKQNPALLRLINENQAEFLRLINEAGAEGAEGGDAVGRLAGGYPQSVN 347
Query: 354 VTPEEREAIE 363
VTPEERE+IE
Sbjct: 348 VTPEERESIE 357
>gi|168020994|ref|XP_001763027.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162685839|gb|EDQ72232.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 370
Score = 332 bits (850), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 207/366 (56%), Positives = 245/366 (66%), Gaps = 39/366 (10%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG HF++EV P D V +VK+ IE QG + +P SQQ+LIHQGKVLKD TT+E
Sbjct: 1 MKISVKTLKGNHFDLEVSPADTVLNVKRQIEDSQGKESFPCSQQLLIHQGKVLKDETTME 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKV+EN FVVVMLTK+K + +GAS PP+S+ T
Sbjct: 61 ENKVSENGFVVVMLTKAK-TGAGAS----------------PPSSSGTT----------- 92
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
Q+ A P+P P + + YGQAASNLVAG+ LE TVQQI+
Sbjct: 93 --QAPAPVAAATPPAPARSPATPSPPTPATPAPAPASTYGQAASNLVAGNVLETTVQQIM 150
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQ--AGNPPAQ 238
DMGGGSWDR+TV+RALRAA+NNPERAVEYLYSGIPE + PV GG+ A
Sbjct: 151 DMGGGSWDRDTVVRALRAAFNNPERAVEYLYSGIPESAEMRPV-----GGRSPAVAGVPA 205
Query: 239 TQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQ 298
PA AP GPNA PLDLFPQG+P M GAG LDFLRN+ Q +LRTMVQANPQ
Sbjct: 206 ATPAAPAQAAPAGGPNAAPLDLFPQGMPGMAGGGGAGALDFLRNNPQ-ASLRTMVQANPQ 264
Query: 299 ILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP-VEGGEGNVLGQLASAMPQAVTVTPE 357
ILQPMLQELGKQNP L+RLI ++Q +FLRLINE EG EG++LGQLA AMPQ++ VTPE
Sbjct: 265 ILQPMLQELGKQNPALLRLINDNQAEFLRLINEAGAEGAEGDILGQLAGAMPQSINVTPE 324
Query: 358 EREAIE 363
EREAI+
Sbjct: 325 EREAID 330
>gi|357158336|ref|XP_003578095.1| PREDICTED: probable DNA repair protein RAD23-like isoform 2
[Brachypodium distachyon]
Length = 370
Score = 331 bits (849), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 200/366 (54%), Positives = 239/366 (65%), Gaps = 44/366 (12%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV VKTLKG+ F+IEV P DKVSDVKK IE+ QG +VYPA QQMLIHQG
Sbjct: 1 MKVSVKTLKGSSFQIEVNPADKVSDVKKLIESSQGQNVYPADQQMLIHQG---------- 50
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTT-TSQTPAPTV 119
+K SSS A S P+NQ APPT T P SQ P
Sbjct: 51 ---------------TNKGSSSAAPAKSKEPSNQ------APPTQTVPANPPSQAPVVPA 89
Query: 120 APPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQI 179
P + P P +AP P +PA A A VS+ ++ YGQAASNLVAG NLEAT+Q I
Sbjct: 90 PPAAAAPAPIVPISAPTPTATASPASAVA---VSTEAETYGQAASNLVAGGNLEATIQSI 146
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 239
L+MGGG+WDR+TV+RALRAA+NNPERAVEYLYSGIPE +P ++ P
Sbjct: 147 LEMGGGTWDRDTVLRALRAAFNNPERAVEYLYSGIPEPMEIPAPPPSAQ------PADPV 200
Query: 240 QAQQPAAPA-PTSGPNANPLDLFPQGLPNMGSN-AGAGTLDFLRNSQQFQALRTMVQANP 297
QA Q PA +SGPNA+PLDLFPQ LPN +N AG G LD LRN+ QF++L ++VQANP
Sbjct: 201 QALQATQPAVASSGPNASPLDLFPQALPNASANAAGEGNLDVLRNNAQFRSLLSLVQANP 260
Query: 298 QILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEG-NVLGQLASAMPQAVTVTP 356
QILQP+LQELGKQNP +++LIQ++Q +FLRLINEP EG E N+L Q A +PQ + VTP
Sbjct: 261 QILQPLLQELGKQNPQILQLIQDNQAEFLRLINEPAEGDEDENLLDQFAEGVPQTIAVTP 320
Query: 357 EEREAI 362
EE EAI
Sbjct: 321 EENEAI 326
>gi|115444607|ref|NP_001046083.1| Os02g0179300 [Oryza sativa Japonica Group]
gi|50252077|dbj|BAD28007.1| putative RAD23 protein [Oryza sativa Japonica Group]
gi|113535614|dbj|BAF07997.1| Os02g0179300 [Oryza sativa Japonica Group]
gi|222622305|gb|EEE56437.1| hypothetical protein OsJ_05616 [Oryza sativa Japonica Group]
Length = 369
Score = 331 bits (848), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 201/368 (54%), Positives = 242/368 (65%), Gaps = 44/368 (11%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKGT FEI V+P D + VKK IE +QG D YP QQ+LIH GKVLKD +TLE
Sbjct: 1 MKLTVKTLKGTQFEIRVQPNDTIMAVKKIIEEIQGKDSYPWGQQLLIHNGKVLKDESTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKV+E F+VVML+KSK S S + S TS+ P T +TPA
Sbjct: 61 ENKVSEVGFLVVMLSKSKASGSSGALSSL--------------TSSTPLTRQETPADASR 106
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
AAP P AP P P P + S+ YGQAASNL++GSNL+ T+ Q++
Sbjct: 107 ------------AAPQPLVAPTRTPQPERPPAEAPSNAYGQAASNLLSGSNLDTTINQLM 154
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP--EQTAVPPVARASAGGQAGN--PP 236
+MGGGSWDR+ V RALRAAYNNPERAVEYLYSGIP + AVP AGGQ N P
Sbjct: 155 EMGGGSWDRDKVQRALRAAYNNPERAVEYLYSGIPITAEVAVP------AGGQGANTTEP 208
Query: 237 AQTQAQQPAAPAPTSG-PNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQA 295
+ T+ A SG PNA+PL+LFPQG N G AG GTL+FLR++QQFQALR MV
Sbjct: 209 SSTRE------ASLSGIPNASPLNLFPQGDANDGGGAGGGTLEFLRHNQQFQALREMVHT 262
Query: 296 NPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQ-LASAMPQAVTV 354
NPQILQPMLQEL K+NP L+RLIQE+ +FL+LINEP +G +G+ L Q MP ++ V
Sbjct: 263 NPQILQPMLQELSKKNPQLLRLIQENHDEFLQLINEPFDGADGDFLDQPDQDEMPHSINV 322
Query: 355 TPEEREAI 362
TPEE+EAI
Sbjct: 323 TPEEQEAI 330
>gi|218190185|gb|EEC72612.1| hypothetical protein OsI_06092 [Oryza sativa Indica Group]
Length = 369
Score = 331 bits (848), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 201/368 (54%), Positives = 242/368 (65%), Gaps = 44/368 (11%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKGT FEI V+P D + VKK IE +QG D YP QQ+LIH GKVLKD +TLE
Sbjct: 1 MKLTVKTLKGTQFEIRVQPNDTIMAVKKIIEEIQGKDSYPWGQQLLIHNGKVLKDESTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKV+E F+VVML+KSK S S + S TS+ P T +TPA
Sbjct: 61 ENKVSEVGFLVVMLSKSKASGSSGALSSL--------------TSSTPLTRQETPADASR 106
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
AAP P AP P P P + S+ YGQAASNL++GSNL+ T+ Q++
Sbjct: 107 ------------AAPQPLVAPTRTPQPERPPAEAPSNAYGQAASNLLSGSNLDTTINQLM 154
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP--EQTAVPPVARASAGGQAGN--PP 236
+MGGGSWDR+ V RALRAAYNNPERAVEYLYSGIP + AVP AGGQ N P
Sbjct: 155 EMGGGSWDRDKVQRALRAAYNNPERAVEYLYSGIPITAEVAVP------AGGQGANTTEP 208
Query: 237 AQTQAQQPAAPAPTSG-PNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQA 295
+ T+ A SG PNA+PL+LFPQG N G AG GTL+FLR++QQFQALR MV
Sbjct: 209 SSTRE------ASLSGIPNASPLNLFPQGDANDGDGAGGGTLEFLRHNQQFQALREMVHT 262
Query: 296 NPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQ-LASAMPQAVTV 354
NPQILQPMLQEL K+NP L+RLIQE+ +FL+LINEP +G +G+ L Q MP ++ V
Sbjct: 263 NPQILQPMLQELSKKNPQLLRLIQENHDEFLQLINEPFDGADGDFLDQPDQDEMPHSINV 322
Query: 355 TPEEREAI 362
TPEE+EAI
Sbjct: 323 TPEEQEAI 330
>gi|1914685|emb|CAA72742.1| RAD23 protein, isoform II [Daucus carota]
Length = 379
Score = 330 bits (847), Expect = 5e-88, Method: Compositional matrix adjust.
Identities = 190/367 (51%), Positives = 234/367 (63%), Gaps = 31/367 (8%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI +P D V +KKNIE +QG D YP QQ+LIH GKVLKD +TL
Sbjct: 1 MKLTVKTLKGSHFEIRAQPNDTVMAIKKNIEDLQGKDNYPCGQQLLIHNGKVLKDESTLA 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPT-- 118
E+K++E+ F+VVML KSK SS + PA Q+ + + P + AP
Sbjct: 61 ESKISEDGFLVVMLGKSKTMSS-----TGTPAAQSSSAPAPTPAPAVAPAPAPAAAPASA 115
Query: 119 VAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQ 178
V P +VPE+ P +PA AP SD YG+AASN+VAGSNLE T+Q
Sbjct: 116 VIPNTTVPEA---PLSPAFAP----------------SDTYGEAASNVVAGSNLEQTIQH 156
Query: 179 ILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE--QTAVPPVARASAGGQAGNPP 236
I+DMGGG WD V RALRAAYNNPERAV+YLYSGIPE + AVP AGN
Sbjct: 157 IMDMGGGMWDTNMVSRALRAAYNNPERAVDYLYSGIPEMAEAAVPVSHFQGDQINAGNNA 216
Query: 237 AQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQAN 296
AAP PN+ PL++FPQ + + AG G+L+FLRN+ QFQ LR+MVQ N
Sbjct: 217 ISDNGVAGAAPG---APNSLPLNMFPQETLSGVTGAGLGSLEFLRNNPQFQTLRSMVQRN 273
Query: 297 PQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTP 356
PQILQPML ELGKQNP L+R IQEH +FL+LINEPVE EG++ Q +PQ +TVT
Sbjct: 274 PQILQPMLLELGKQNPQLLRQIQEHHEEFLQLINEPVEASEGDMFDQPEQDVPQEITVTA 333
Query: 357 EEREAIE 363
++EAIE
Sbjct: 334 ADQEAIE 340
>gi|255543415|ref|XP_002512770.1| uv excision repair protein rad23, putative [Ricinus communis]
gi|223547781|gb|EEF49273.1| uv excision repair protein rad23, putative [Ricinus communis]
Length = 359
Score = 329 bits (843), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 197/370 (53%), Positives = 238/370 (64%), Gaps = 57/370 (15%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI V+P D V VKKNIE VQG D YP QQ+LIH GKVLKD TTL
Sbjct: 1 MKLTVKTLKGSHFEIRVQPNDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+NKV E+ F+VVML+KSK S S ++ + +A T +++ TPA V
Sbjct: 61 DNKVTEDGFLVVMLSKSKTSGSSGTSSTQ---------PAAATPPTTAPSSNSTPAVEVQ 111
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
PP + +D YG+AASNLVAG NLE T+QQI+
Sbjct: 112 PP-------------------------------TQTDTYGEAASNLVAGDNLEQTIQQIM 140
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP-PVARASAG--GQAGNPPA 237
DMGGG+WD+ETV RALRAAYNNPERAV+YLYSGIPE V PVA AG + G PA
Sbjct: 141 DMGGGTWDKETVTRALRAAYNNPERAVDYLYSGIPETAEVAVPVAHLPAGQATETGAAPA 200
Query: 238 QTQAQQPAAPAPTSG-PNANPLDLFPQ---GLPNMGSNAGAGTLDFLRNSQQFQALRTMV 293
AP SG PN++PL++FPQ GS G G+LDFLRN+ QFQ LR+MV
Sbjct: 201 ----------APLSGVPNSSPLNMFPQEALSAAGGGSAGGLGSLDFLRNNAQFQTLRSMV 250
Query: 294 QANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVT 353
QANPQILQPMLQELGKQNP L+R+IQEH +FL+L+NEP+EG EG++ Q MP A+
Sbjct: 251 QANPQILQPMLQELGKQNPQLLRMIQEHHAEFLQLLNEPLEGSEGDIFDQGEQDMPHAIN 310
Query: 354 VTPEEREAIE 363
VTP E+ AIE
Sbjct: 311 VTPAEQAAIE 320
>gi|242060736|ref|XP_002451657.1| hypothetical protein SORBIDRAFT_04g005370 [Sorghum bicolor]
gi|241931488|gb|EES04633.1| hypothetical protein SORBIDRAFT_04g005370 [Sorghum bicolor]
Length = 369
Score = 322 bits (824), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 197/367 (53%), Positives = 239/367 (65%), Gaps = 42/367 (11%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKGTHFEI V+P D + VKKNIE +QG D YP QQ+LI GKVLKD +TL+
Sbjct: 1 MKLTVKTLKGTHFEIRVQPNDTIMAVKKNIEEIQGKDSYPWGQQLLIFNGKVLKDESTLD 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKV E+ F+VVML+K K S S ++ S+QP S TPA A
Sbjct: 61 ENKVNEDGFLVVMLSKGKTSGSSGTS------------------SSQP---SNTPAARQA 99
Query: 121 PPQSVPESAP-PPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQI 179
PP P+ AP PP AP P PA AP + Y AAS+L++GSN++ + Q+
Sbjct: 100 PPLDAPQQAPQPPVAPTTTSQPEGLPAQAP------PNTYDNAASSLLSGSNVDTMINQL 153
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP--EQTAVPPVARASAGGQAGNPPA 237
++MGGGSWDR+ V RALRAAYNNPERAVEYLYSGIP + AVP GGQ N
Sbjct: 154 MEMGGGSWDRDKVQRALRAAYNNPERAVEYLYSGIPVTAEVAVP------IGGQGAN--- 204
Query: 238 QTQAQQPAAPAPTSG-PNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQAN 296
T + P A SG PN PL+LFPQG N G AG G LDFLRN+QQFQA+R MV N
Sbjct: 205 -TTDRAPTGEAGLSGIPNTAPLNLFPQGGSNAGGGAGGGPLDFLRNNQQFQAVREMVHTN 263
Query: 297 PQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQ-LASAMPQAVTVT 355
PQILQPML EL KQNP ++RLI+E+ +FL+L+NEP EGGEG+ L Q MP A++VT
Sbjct: 264 PQILQPMLVELSKQNPQILRLIEENHDEFLQLLNEPFEGGEGDFLDQPEEDEMPHAISVT 323
Query: 356 PEEREAI 362
PEE++AI
Sbjct: 324 PEEQDAI 330
>gi|356521680|ref|XP_003529481.1| PREDICTED: putative DNA repair protein RAD23-1-like isoform 2
[Glycine max]
Length = 343
Score = 320 bits (821), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 187/363 (51%), Positives = 225/363 (61%), Gaps = 61/363 (16%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI V+P D V VKKNIE VQG D YP QQ+LIH GKVLKD TTL
Sbjct: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLV 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKV+E+ F+VVML+KSK T+ SA +S QP + PA TV
Sbjct: 61 ENKVSEDGFLVVMLSKSK------------------TSGSAAASSVQPASN---PATTV- 98
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVS-DVYGQAASNLVAGSNLEATVQQI 179
S+ S PP P A + + AP ++VS D YG AASNLVAGSNLE T+QQI
Sbjct: 99 ---SMSNSTPPSDPPVQTQAANNSTSSTDAPTTNVSADTYGLAASNLVAGSNLEQTIQQI 155
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 239
+DMGGG+WDR+TV RALRAAYNNPERA++YLYSGIPE V +AG +G P
Sbjct: 156 MDMGGGNWDRDTVSRALRAAYNNPERAIDYLYSGIPEAAEVAVPVPQTAGMSSGAVPV-- 213
Query: 240 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQI 299
GPN++PL++FPQ + + AG G+LDFLRN NP
Sbjct: 214 ------------GPNSSPLNMFPQETIS-STGAGLGSLDFLRN-------------NP-- 245
Query: 300 LQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEER 359
QELGKQNP L+RLIQEH +FL+LINEPVEG EG++ Q MP A+ VTP E+
Sbjct: 246 -----QELGKQNPGLLRLIQEHHGEFLQLINEPVEGSEGDMFEQPEQDMPHAINVTPAEQ 300
Query: 360 EAI 362
EAI
Sbjct: 301 EAI 303
>gi|226492672|ref|NP_001148810.1| LOC100282427 [Zea mays]
gi|195622286|gb|ACG32973.1| DNA repair protein RAD23-1 [Zea mays]
gi|238014028|gb|ACR38049.1| unknown [Zea mays]
gi|413926349|gb|AFW66281.1| DNA repair protein RAD23-1 isoform 1 [Zea mays]
gi|413926350|gb|AFW66282.1| DNA repair protein RAD23-1 isoform 2 [Zea mays]
gi|413926351|gb|AFW66283.1| DNA repair protein RAD23-1 isoform 3 [Zea mays]
Length = 368
Score = 319 bits (818), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 195/367 (53%), Positives = 234/367 (63%), Gaps = 43/367 (11%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKGTHFEI V+P D + VKKNIE +QG D YP QQ+LI GKVLKD +TLE
Sbjct: 1 MKLTVKTLKGTHFEIRVQPNDTIMAVKKNIEEIQGKDSYPWGQQLLIFNGKVLKDESTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKV E+ F+VVML+K K S S ++ S S TPA A
Sbjct: 61 ENKVNEDGFLVVMLSKGKTSGSTGTSSSQH---------------------SNTPATRQA 99
Query: 121 PPQSVPESAP-PPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQI 179
PP P+ AP PP AP P PA AP + + AASNL++G N++ + Q+
Sbjct: 100 PPLEAPQQAPQPPVAPITTSQPEGLPAQAP-------NTHDNAASNLLSGRNVDTIINQL 152
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP--EQTAVPPVARASAGGQAGNPPA 237
++MGGGSWD++ V RALRAAYNNPERAVEYLYSGIP + AVP GGQ N
Sbjct: 153 MEMGGGSWDKDKVQRALRAAYNNPERAVEYLYSGIPVTAEIAVP------IGGQGAN--- 203
Query: 238 QTQAQQPAAPAPTSG-PNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQAN 296
T + P A SG PN PLDLFPQG N G AG G LDFLRN+ QFQA+R MV N
Sbjct: 204 -TTDRAPTGEAGLSGIPNTAPLDLFPQGASNAGGGAGGGPLDFLRNNPQFQAVREMVHTN 262
Query: 297 PQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQ-LASAMPQAVTVT 355
PQILQPML EL KQNP ++RLI+E+ +FL+L+NEP EGGEG+ L Q MP A++VT
Sbjct: 263 PQILQPMLVELSKQNPQILRLIEENHDEFLQLLNEPFEGGEGDFLDQPEEDEMPHAISVT 322
Query: 356 PEEREAI 362
PEE+EAI
Sbjct: 323 PEEQEAI 329
>gi|413926348|gb|AFW66280.1| hypothetical protein ZEAMMB73_839350 [Zea mays]
Length = 369
Score = 315 bits (808), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 190/368 (51%), Positives = 230/368 (62%), Gaps = 44/368 (11%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKGTHFEI V+P D + VKKNIE +QG D YP QQ+LI GKVLKD +TLE
Sbjct: 1 MKLTVKTLKGTHFEIRVQPNDTIMAVKKNIEEIQGKDSYPWGQQLLIFNGKVLKDESTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKV E+ F+VVML+K K S S ++ S S TPA A
Sbjct: 61 ENKVNEDGFLVVMLSKGKTSGSTGTSSSQH---------------------SNTPATRQA 99
Query: 121 PPQSVPESAP-PPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQI 179
PP P+ AP PP AP P PA AP + + AASNL++G N++ + Q+
Sbjct: 100 PPLEAPQQAPQPPVAPITTSQPEGLPAQAP-------NTHDNAASNLLSGRNVDTIINQL 152
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP--EQTAVPPVARASAGGQAGNPPA 237
++MGGGSWD++ V RALRAAYNNPERAVEYLYSGIP + AVP GGQ N
Sbjct: 153 MEMGGGSWDKDKVQRALRAAYNNPERAVEYLYSGIPVTAEIAVP------IGGQGAN--- 203
Query: 238 QTQAQQPAAPAPTSG-PNANPLDLFPQGLPNMGSNAGAGT-LDFLRNSQQFQALRTMVQA 295
T + P A SG PN PLDLFPQ + G LDFLRN+ QFQA+R MV
Sbjct: 204 -TTDRAPTGEAGLSGIPNTAPLDLFPQQGASNAGGGAGGGPLDFLRNNPQFQAVREMVHT 262
Query: 296 NPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQ-LASAMPQAVTV 354
NPQILQPML EL KQNP ++RLI+E+ +FL+L+NEP EGGEG+ L Q MP A++V
Sbjct: 263 NPQILQPMLVELSKQNPQILRLIEENHDEFLQLLNEPFEGGEGDFLDQPEEDEMPHAISV 322
Query: 355 TPEEREAI 362
TPEE+EAI
Sbjct: 323 TPEEQEAI 330
>gi|42572181|ref|NP_974181.1| putative DNA repair protein RAD23-1 [Arabidopsis thaliana]
gi|332198159|gb|AEE36280.1| putative DNA repair protein RAD23-1 [Arabidopsis thaliana]
Length = 351
Score = 311 bits (796), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 190/368 (51%), Positives = 231/368 (62%), Gaps = 61/368 (16%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI V P D + VKKNIE QG D YP QQ+LIH GKVLKD T+L
Sbjct: 1 MKLTVKTLKGSHFEIRVLPSDTIMAVKKNIEDSQGKDNYPCGQQLLIHNGKVLKDETSLV 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKV E F+VVML+KSK SG S A+ QT+S + P S TT+S PA A
Sbjct: 61 ENKVTEEGFLVVMLSKSK---SGGSAGQAS----VQTSSVSQPVSA--TTSSTKPA---A 108
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P S +S+P PA+P PA A +D YGQAAS LV+GS+LE VQQI+
Sbjct: 109 P--STTQSSPVPASPIPAQEQPAAQ----------TDTYGQAASTLVSGSSLEQMVQQIM 156
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE--QTAVP-PVARASAGGQAGNPPA 237
+MGGGSWD+ETV RALRAAYNNPERAV+YLYSGIP+ + AVP P A+ + G A
Sbjct: 157 EMGGGSWDKETVTRALRAAYNNPERAVDYLYSGIPQTAEVAVPVPEAQIAGSGAA----- 211
Query: 238 QTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANP 297
P APA + GPN++PLDLFPQ + GTL+FLRN+
Sbjct: 212 ------PVAPA-SGGPNSSPLDLFPQETVAAAGSGDLGTLEFLRNND------------- 251
Query: 298 QILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEG--GEGNVLGQLASAMPQAVTVT 355
QELGKQNP L+RLIQE+Q +FL+L+NEP EG GEG++ Q MP A+ VT
Sbjct: 252 -------QELGKQNPQLLRLIQENQAEFLQLVNEPYEGSDGEGDMFDQPEQEMPHAINVT 304
Query: 356 PEEREAIE 363
P E+EAI+
Sbjct: 305 PAEQEAIQ 312
>gi|326529487|dbj|BAK04690.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 367
Score = 310 bits (793), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 188/365 (51%), Positives = 234/365 (64%), Gaps = 40/365 (10%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKGTHFEI V+ D + VKKNIE +QG D YP QQ+LIH GKVLKD +TL+
Sbjct: 1 MKLTVKTLKGTHFEIRVQHNDTIMAVKKNIEEIQGKDSYPWGQQLLIHNGKVLKDESTLD 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
EN+V E F+VVML+KSK ++S+ +S QP++T P +
Sbjct: 61 ENQVGEAGFLVVMLSKSK------------------ASASSGGSSAQPSST-----PVTS 97
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
V + P P PA P+S+V D+ AAS+L++GSNL+ + QI+
Sbjct: 98 QAPPVAQPQAPQPQVPSTTTSQPERPPAETPLSTV-DI---AASDLLSGSNLDTMINQIM 153
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP--EQTAVPPVARASAGGQAGNPPAQ 238
+MGGGSWDR+ V RALRAAYNNPERA++YLYSGIP + AVP V GQ N
Sbjct: 154 EMGGGSWDRDKVQRALRAAYNNPERAIDYLYSGIPVTAEVAVPVV------GQGAN---- 203
Query: 239 TQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQ 298
T A P + PN PLDLFPQG + G AG G+LDFLRN+QQFQALR MV NPQ
Sbjct: 204 TTAAAPGETGLSGIPNTAPLDLFPQGASHAGGAAGGGSLDFLRNNQQFQALREMVHTNPQ 263
Query: 299 ILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLA-SAMPQAVTVTPE 357
ILQPMLQEL KQNP L+RLIQE+ +FL+L+NE EGG+G+ L Q MP A++VTPE
Sbjct: 264 ILQPMLQELSKQNPQLLRLIQENNDEFLQLLNETFEGGDGDFLDQADQDEMPHAISVTPE 323
Query: 358 EREAI 362
E+EAI
Sbjct: 324 EQEAI 328
>gi|449515726|ref|XP_004164899.1| PREDICTED: putative DNA repair protein RAD23-1-like, partial
[Cucumis sativus]
Length = 386
Score = 308 bits (788), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 184/347 (53%), Positives = 225/347 (64%), Gaps = 40/347 (11%)
Query: 23 VSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSSS 82
V VKKNIE VQG D YP SQQ+LIH GKVLKD TTL ENK+ E+ F+VVML+KSK
Sbjct: 35 VLGVKKNIENVQGKDSYPCSQQLLIHNGKVLKDETTLTENKITEDGFLVVMLSKSK---- 90
Query: 83 GASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPAPA 142
AP + +++ T T + S+PE+ PA PA + A
Sbjct: 91 -------APGSTGSSSTQTTTIVPTTTPTPNS--------TSIPEA---PAQPAASRNVA 132
Query: 143 PAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNN 202
+ P ++ D YGQAASNLV+G+NLE T+Q+I+DMGGGSWDRETV RALRAAYNN
Sbjct: 133 ISDVPT---ANAQIDTYGQAASNLVSGNNLEQTIQEIMDMGGGSWDRETVTRALRAAYNN 189
Query: 203 PERAVEYLYSGIPEQTAVP-PVARASAGGQAGNPPAQTQAQQPAAPAP--TSGPNANPLD 259
PERAV+YLYSGIPE V PVAR PP A AP + GPN++PL+
Sbjct: 190 PERAVDYLYSGIPETAEVAAPVAR---------PPTGQPIDAGGATAPPVSGGPNSSPLN 240
Query: 260 LFPQ---GLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMR 316
+FPQ G G+L+FLRN+ QFQALR+MVQANPQILQ MLQELGKQNP L+R
Sbjct: 241 MFPQESLAAAAGGGGGSLGSLEFLRNNPQFQALRSMVQANPQILQAMLQELGKQNPQLLR 300
Query: 317 LIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEEREAIE 363
LIQ+HQ +FL+LINEP+EG EG++ Q MP A+ VTP E++AIE
Sbjct: 301 LIQDHQAEFLQLINEPLEGFEGDLFDQPDQDMPHAINVTPAEQQAIE 347
>gi|357138066|ref|XP_003570619.1| PREDICTED: putative DNA repair protein RAD23-1-like [Brachypodium
distachyon]
Length = 368
Score = 305 bits (780), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 191/375 (50%), Positives = 231/375 (61%), Gaps = 59/375 (15%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKGTHFEI V+ D + VKKNIE +QG D YP QQ+LIH GK+LKD +TLE
Sbjct: 1 MKLTVKTLKGTHFEIRVQQNDTIMAVKKNIEEIQGKDNYPWGQQLLIHTGKILKDESTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVS----------SSGASTVSAAPANQAQTTSSAPPTSTQPTT 110
EN+V+E+ +VVML+KSK S SS T A P Q Q S+ P PTT
Sbjct: 61 ENQVSEDGSLVVMLSKSKASVSSGASSAQPSSIPVTRQAPPDAQIQAAESSVP----PTT 116
Query: 111 TSQTPAPTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGS 170
TSQ P PA P+++V V AS+L++GS
Sbjct: 117 TSQPERP-----------------------------PAETPLNTVDHV----ASDLLSGS 143
Query: 171 NLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP--EQTAVPPVARASA 228
NL+ + QI++MGGGSWDR+ V RALRAAYNNPERAV+YLYSGIP + AVP
Sbjct: 144 NLDTMINQIMEMGGGSWDRDKVQRALRAAYNNPERAVDYLYSGIPVTAEVAVP------V 197
Query: 229 GGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQA 288
G Q N T A P + PN PL+LFPQG N G AG G+LDFLRN+QQFQA
Sbjct: 198 GPQGAN---STDAAPPGVTGLSGIPNTAPLNLFPQGASNAGGAAGGGSLDFLRNNQQFQA 254
Query: 289 LRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQ-LASA 347
LR MV NPQILQPMLQEL KQNP L+RLIQE+ +FL L+NE + G+G+ L Q
Sbjct: 255 LREMVHTNPQILQPMLQELSKQNPQLLRLIQENNDEFLGLLNENFDAGDGDFLDQPDEDE 314
Query: 348 MPQAVTVTPEEREAI 362
MP A++VTPEE+EAI
Sbjct: 315 MPHAISVTPEEQEAI 329
>gi|194690718|gb|ACF79443.1| unknown [Zea mays]
gi|414589469|tpg|DAA40040.1| TPA: hypothetical protein ZEAMMB73_722140 [Zea mays]
Length = 365
Score = 304 bits (779), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 200/364 (54%), Positives = 229/364 (62%), Gaps = 50/364 (13%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV VKTLKG+ F+IEV+P DKV+ VKK IE +Q YPA QQ+LIHQGK
Sbjct: 1 MKVSVKTLKGSSFQIEVEPTDKVAAVKKVIENMQEQASYPADQQVLIHQGK--------- 51
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ G+S SAAPA T + APPT T P QT A A
Sbjct: 52 --------------------NKGSS--SAAPA--KTTANQAPPTQTVPVVPPQTSAAPAA 87
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P VP SA A A A A D YGQAASNLVAGSNLE T+Q IL
Sbjct: 88 PAPIVPVSALAATATASAAPAVAVSTEA--------DSYGQAASNLVAGSNLEGTIQSIL 139
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
+MGGG WDR+TV+RALR AYNNPERAVEYLYSGIPEQ VP + Q NP Q
Sbjct: 140 EMGGGIWDRDTVLRALRVAYNNPERAVEYLYSGIPEQMDVP---TSPPSIQPVNPVQAAQ 196
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQIL 300
A Q AAP SGPNANPLDLFPQ LPN +NAG G LD LRN+ QFQ L +VQANPQIL
Sbjct: 197 AAQTAAP---SGPNANPLDLFPQSLPNASANAGTGNLDVLRNNVQFQNLLGLVQANPQIL 253
Query: 301 QPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGN--VLGQLASAMPQAVTVTPEE 358
QP+LQELGKQNP +M+LIQE+Q +F+R+INEP+EG E N +L Q+A A + + VTPEE
Sbjct: 254 QPLLQELGKQNPQVMQLIQENQAEFMRMINEPLEGDEENEMMLDQMADA-AETIAVTPEE 312
Query: 359 REAI 362
EAI
Sbjct: 313 NEAI 316
>gi|7715605|gb|AAF68123.1|AC010793_18 F20B17.8 [Arabidopsis thaliana]
Length = 367
Score = 303 bits (776), Expect = 8e-80, Method: Compositional matrix adjust.
Identities = 177/368 (48%), Positives = 223/368 (60%), Gaps = 45/368 (12%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI V P D + VKKNIE QG D YP QQ+LIH GKVLKD T+L
Sbjct: 1 MKLTVKTLKGSHFEIRVLPSDTIMAVKKNIEDSQGKDNYPCGQQLLIHNGKVLKDETSLV 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKV E F+VVML+KSK S G++ ++ + S P ++ P T +
Sbjct: 61 ENKVTEEGFLVVMLSKSK--SGGSAGQASVQCVRLLLFHSLFPLPHLRLSSIYNPVFTCS 118
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
++ +D YGQAAS LV+GS+LE VQQI+
Sbjct: 119 C------------------------FTYSCSRTTGTDTYGQAASTLVSGSSLEQMVQQIM 154
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE--QTAVP-PVARASAGGQAGNPPA 237
+MGGGSWD+ETV RALRAAYNNPERAV+YLYSGIP+ + AVP P A+ + G A
Sbjct: 155 EMGGGSWDKETVTRALRAAYNNPERAVDYLYSGIPQTAEVAVPVPEAQIAGSGAA----- 209
Query: 238 QTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANP 297
P APA + GPN++PLDLFPQ + GTL+FLRN+ Q L + A
Sbjct: 210 ------PVAPA-SGGPNSSPLDLFPQETVAAAGSGDLGTLEFLRNNDQVAIL--TISAFS 260
Query: 298 QILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEG--GEGNVLGQLASAMPQAVTVT 355
+PMLQELGKQNP L+RLIQE+Q +FL+L+NEP EG GEG++ Q MP A+ VT
Sbjct: 261 LNCEPMLQELGKQNPQLLRLIQENQAEFLQLVNEPYEGSDGEGDMFDQPEQEMPHAINVT 320
Query: 356 PEEREAIE 363
P E+EAI+
Sbjct: 321 PAEQEAIQ 328
>gi|388511083|gb|AFK43607.1| unknown [Lotus japonicus]
Length = 228
Score = 303 bits (776), Expect = 9e-80, Method: Compositional matrix adjust.
Identities = 153/191 (80%), Positives = 166/191 (86%), Gaps = 5/191 (2%)
Query: 175 TVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGN 234
+QQILDMGGGSWDR+TV+RALRAA+NNPERAV+YLYSGIPEQ PPV + A Q GN
Sbjct: 1 MIQQILDMGGGSWDRDTVVRALRAAFNNPERAVDYLYSGIPEQAEAPPVTQMPASAQPGN 60
Query: 235 PPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSN-AGAGTLDFLRNSQQFQALRTMV 293
PPA A A P+SGPNANPLDLFPQGLPN+GS AGAG+LDFLRNSQQFQALR MV
Sbjct: 61 PPA---AAPQLANVPSSGPNANPLDLFPQGLPNVGSGPAGAGSLDFLRNSQQFQALRAMV 117
Query: 294 QANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLA-SAMPQAV 352
QANPQILQPMLQELGKQNPHLMRLIQ+HQ DFLRLINEPVEGGEGN+LGQ A +AMPQAV
Sbjct: 118 QANPQILQPMLQELGKQNPHLMRLIQDHQVDFLRLINEPVEGGEGNILGQPAGAAMPQAV 177
Query: 353 TVTPEEREAIE 363
+VTPEEREAIE
Sbjct: 178 SVTPEEREAIE 188
>gi|223945395|gb|ACN26781.1| unknown [Zea mays]
Length = 294
Score = 263 bits (671), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 163/292 (55%), Positives = 195/292 (66%), Gaps = 23/292 (7%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKGT+FEIE P+ V+DVK+ IET QG Y A QQMLI+QGK+LKD TTLE
Sbjct: 1 MKLNVKTLKGTNFEIEASPDASVADVKRIIETTQGQSTYRADQQMLIYQGKILKDETTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
N VAENSF+V+ML+K+K SSSGAST + A A +AP + T AP
Sbjct: 61 SNGVAENSFLVIMLSKAKASSSGASTATTAKAPATLAQPAAPVAPAASVARTPTQAPV-- 118
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
+ E+APP P APA A + +DVY QAASNLV+G+NLE T+QQIL
Sbjct: 119 ---ATAETAPPSVQPQAAPAATVA-------ATDDADVYSQAASNLVSGNNLEQTIQQIL 168
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGN----PP 236
DMGGG+W+R+TV+RALRAAYNNPERA++YLYSGIPE PVARA A GQ N P
Sbjct: 169 DMGGGTWERDTVVRALRAAYNNPERAIDYLYSGIPENVEAQPVARAPAAGQQTNQQAASP 228
Query: 237 AQTQAQQPAAPAPTS-GPNANPLDLFPQGLPNMGSN------AGAGTLDFLR 281
AQ P P+P S GPNANPL+LFPQG+P+ GSN AG+G LD LR
Sbjct: 229 AQPAVALPVQPSPASAGPNANPLNLFPQGVPSGGSNPGVVPGAGSGALDALR 280
>gi|224057188|ref|XP_002299163.1| predicted protein [Populus trichocarpa]
gi|222846421|gb|EEE83968.1| predicted protein [Populus trichocarpa]
Length = 349
Score = 259 bits (662), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 134/211 (63%), Positives = 162/211 (76%), Gaps = 8/211 (3%)
Query: 156 SDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 215
SD YGQAASNLVAGS+LE T+QQI+D+GGG+WD+ETV RALRAAYNNPERAV+YLYSGIP
Sbjct: 105 SDTYGQAASNLVAGSSLEQTIQQIMDVGGGNWDKETVTRALRAAYNNPERAVDYLYSGIP 164
Query: 216 EQTAVP-PVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGA 274
E V PVAR A + +T A A GPN++PL++FP+ L G +AG
Sbjct: 165 ETAEVAVPVARFPA-----DQGIETGAAPAAPALAPGGPNSSPLNMFPETLSGGGGDAGL 219
Query: 275 --GTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP 332
G+LDFLRN+QQFQALR+MVQANPQILQPMLQELGKQNP L+R+IQEH +FL+LINEP
Sbjct: 220 VLGSLDFLRNNQQFQALRSMVQANPQILQPMLQELGKQNPQLLRMIQEHNAEFLQLINEP 279
Query: 333 VEGGEGNVLGQLASAMPQAVTVTPEEREAIE 363
++G EG++ Q MP A+ VTP E+EAIE
Sbjct: 280 LDGSEGDIFDQPDQDMPHAINVTPAEQEAIE 310
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 52/76 (68%), Positives = 61/76 (80%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI+V+P D V VKKNIE VQG D YP QQ+LIH GKVLKD TTL
Sbjct: 1 MKLTVKTLKGSHFEIKVQPTDTVMGVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLV 60
Query: 61 ENKVAENSFVVVMLTK 76
+NKV E+ F+VVML+K
Sbjct: 61 DNKVTEDGFLVVMLSK 76
>gi|6587822|gb|AAF18513.1|AC010924_26 Contains similarity to gb|Y12014 RAD23 protein isoform II from
Daucus carota and is a member of the Ubiquitin PF|00240
family containing a UBA PF|00627 domain. EST gb|H37284
comes from this gene [Arabidopsis thaliana]
Length = 246
Score = 242 bits (618), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 138/285 (48%), Positives = 167/285 (58%), Gaps = 49/285 (17%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI V P D + VKKNIE Q D YP QQ+LIH GKVLKD TTL
Sbjct: 1 MKLTVKTLKGSHFEIRVLPTDTIMAVKKNIEDSQSKDNYPCGQQLLIHNGKVLKDETTLV 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKV E F+VVML+KSK T SSA P+STQ AP+
Sbjct: 61 ENKVTEEGFLVVMLSKSK------------------TASSAGPSSTQ------LAAPSTT 96
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
+VP S P P ++ SD YGQAAS LV+GS++E VQQI+
Sbjct: 97 QSIAVPASNSTPVQEQP---------------TAQSDTYGQAASTLVSGSSIEQMVQQIM 141
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
+MGGGSWD+ETV RALRAAYNNPERAV+YLYSGIPE +P + G
Sbjct: 142 EMGGGSWDKETVTRALRAAYNNPERAVDYLYSGIPETVTIPATNLSGVG----------S 191
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQ 285
++ AP P+ GPN++PLDLFPQ + + GTL+FLR + Q
Sbjct: 192 GRELTAPPPSGGPNSSPLDLFPQEAVSDAAGGDLGTLEFLRGNDQ 236
>gi|356557201|ref|XP_003546906.1| PREDICTED: LOW QUALITY PROTEIN: putative DNA repair protein
RAD23-1-like [Glycine max]
Length = 284
Score = 235 bits (599), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 122/211 (57%), Positives = 152/211 (72%), Gaps = 13/211 (6%)
Query: 156 SDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 215
+D YGQAASNLVAGS+LE T+QQI+D+GGGSWDR+TV RALRAAYNNP+RAV+YLYS IP
Sbjct: 46 TDTYGQAASNLVAGSSLEQTIQQIMDLGGGSWDRDTVSRALRAAYNNPKRAVDYLYSRIP 105
Query: 216 E--QTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGP--NANPLDLFPQGLPNMGSN 271
E + AVP A P +QT GP N++PL++ PQ +P G+
Sbjct: 106 EAAEIAVPA---------APYPISQTTETGGVTAGAVWGPVPNSSPLNMSPQVIPVSGAG 156
Query: 272 AGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINE 331
AG G+L+ + Q+FQALR+MVQ+NPQILQP+LQELGKQN L RLIQEH +FL+LIN+
Sbjct: 157 AGIGSLELYKKCQEFQALRSMVQSNPQILQPVLQELGKQNLSLSRLIQEHHGEFLQLIND 216
Query: 332 PVEGGEGNVLGQLASAMPQAVTVTPEEREAI 362
PVEG EG++ Q MP A+ VTP E+EAI
Sbjct: 217 PVEGSEGDIFDQPEQDMPHAINVTPAEQEAI 247
>gi|147773186|emb|CAN62701.1| hypothetical protein VITISV_007064 [Vitis vinifera]
Length = 349
Score = 233 bits (594), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 117/193 (60%), Positives = 147/193 (76%), Gaps = 5/193 (2%)
Query: 151 PVSSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYL 210
P+S ++D YGQAASN+V+ ++LE T+QQI+D+GGG+WD+ETV RALRAAYNNPERAV+YL
Sbjct: 157 PLSVLADTYGQAASNIVSANHLEQTIQQIMDIGGGNWDKETVTRALRAAYNNPERAVDYL 216
Query: 211 YSGIPEQTAVP-PVARASAGGQAGNPPAQTQAQQPAAPAPTSGP----NANPLDLFPQGL 265
YSGIPE V PVA A + G + T A + AP + N++PL++FPQ
Sbjct: 217 YSGIPEAAEVAVPVAHFPADQETGGINSSTAAVAGSGAAPAAPASGVPNSSPLNMFPQET 276
Query: 266 PNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDF 325
+ + G G+L+FLRN+ QFQALR MVQANPQILQPMLQELGKQNPHL+RLIQEH +F
Sbjct: 277 LSGAAAGGLGSLEFLRNNHQFQALRAMVQANPQILQPMLQELGKQNPHLLRLIQEHHAEF 336
Query: 326 LRLINEPVEGGEG 338
L+LINEP+EG EG
Sbjct: 337 LQLINEPLEGSEG 349
>gi|388499670|gb|AFK37901.1| unknown [Medicago truncatula]
Length = 215
Score = 221 bits (564), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 137/232 (59%), Positives = 154/232 (66%), Gaps = 29/232 (12%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKGTHFEI+V D V DVKKNIE QG+ VYPA+QQMLIHQGKVLKD TTLE
Sbjct: 1 MKINVKTLKGTHFEIQVNLHDTVGDVKKNIEGAQGAAVYPAAQQMLIHQGKVLKDETTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTST-QPTTTSQTPAPTV 119
EN+VAENSF+V+ML+K+KVSSSGAS SAAP +S PP ST QP A TV
Sbjct: 61 ENQVAENSFIVIMLSKNKVSSSGASAASAAPPAVQPASSLPPPLSTPQPL------ASTV 114
Query: 120 APPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQI 179
+S P P P SNL+AGS LE T+QQI
Sbjct: 115 GQGESNPAQGPVVTPPTTV----------------------VPESNLIAGSTLEPTIQQI 152
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQ 231
L+MGGGSWDR+TVIRALRAAYNNPERAVEYLYSGIPEQ P VA ++ GQ
Sbjct: 153 LEMGGGSWDRDTVIRALRAAYNNPERAVEYLYSGIPEQAEAPAVAASTNVGQ 204
>gi|327493261|gb|AEA86337.1| putative DNA repair protein [Solanum nigrum]
Length = 166
Score = 219 bits (558), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 123/154 (79%), Positives = 131/154 (85%), Gaps = 2/154 (1%)
Query: 212 SGIPEQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSN 271
SGIPE VPPVA + QAGN PAQ Q AP P GPNA+PL+LFPQGLP++GSN
Sbjct: 1 SGIPEAAEVPPVAGSPPSVQAGNQPAQPQPAAQPAPIPAGGPNADPLNLFPQGLPSVGSN 60
Query: 272 -AGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLIN 330
AGA TLDFLRNSQQFQALR MVQANPQILQPMLQELGKQNPHLMRLIQEHQ DFLRLIN
Sbjct: 61 TAGANTLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPHLMRLIQEHQADFLRLIN 120
Query: 331 EPVEGGEG-NVLGQLASAMPQAVTVTPEEREAIE 363
EPVEGGEG NVLGQLA+AMPQA++VTPEEREAIE
Sbjct: 121 EPVEGGEGTNVLGQLAAAMPQAISVTPEEREAIE 154
>gi|413926352|gb|AFW66284.1| hypothetical protein ZEAMMB73_839350 [Zea mays]
Length = 296
Score = 214 bits (545), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 133/267 (49%), Positives = 159/267 (59%), Gaps = 42/267 (15%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKGTHFEI V+P D + VKKNIE +QG D YP QQ+LI GKVLKD +TLE
Sbjct: 1 MKLTVKTLKGTHFEIRVQPNDTIMAVKKNIEEIQGKDSYPWGQQLLIFNGKVLKDESTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKV E+ F+VVML+K K S S ++ S S TPA A
Sbjct: 61 ENKVNEDGFLVVMLSKGKTSGSTGTSSSQH---------------------SNTPATRQA 99
Query: 121 PPQSVPESAP-PPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQI 179
PP P+ AP PP AP P PA AP + + AASNL++G N++ + Q+
Sbjct: 100 PPLEAPQQAPQPPVAPITTSQPEGLPAQAP-------NTHDNAASNLLSGRNVDTIINQL 152
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP--EQTAVPPVARASAGGQAGNPPA 237
++MGGGSWD++ V RALRAAYNNPERAVEYLYSGIP + AVP GGQ N
Sbjct: 153 MEMGGGSWDKDKVQRALRAAYNNPERAVEYLYSGIPVTAEIAVP------IGGQGAN--- 203
Query: 238 QTQAQQPAAPAPTSG-PNANPLDLFPQ 263
T + P A SG PN PLDLFPQ
Sbjct: 204 -TTDRAPTGEAGLSGIPNTAPLDLFPQ 229
>gi|212274727|ref|NP_001130219.1| uncharacterized protein LOC100191313 [Zea mays]
gi|194688580|gb|ACF78374.1| unknown [Zea mays]
gi|414885363|tpg|DAA61377.1| TPA: hypothetical protein ZEAMMB73_350633 [Zea mays]
gi|414885364|tpg|DAA61378.1| TPA: hypothetical protein ZEAMMB73_350633 [Zea mays]
Length = 225
Score = 212 bits (540), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 127/212 (59%), Positives = 145/212 (68%), Gaps = 16/212 (7%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV VKTLKG+ F IEV P DKV+DVKK IE++Q YPA QQ+LIHQGKVLKD TTLE
Sbjct: 1 MKVSVKTLKGSSFHIEVDPTDKVADVKKVIESIQEQASYPADQQVLIHQGKVLKDDTTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
EN+V EN+F+V+ML ++K SS SAAPA T + AP T T P T QT A A
Sbjct: 61 ENQVVENNFLVIMLRQNKGSS------SAAPAK--VTANQAPSTQTVPATPPQTSAAPDA 112
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P VP SAP A A A A D YGQA SNLVAGSNLE T++ IL
Sbjct: 113 PAPIVPVSAPAATATASAAPAVAVSTEA--------DSYGQATSNLVAGSNLEGTIKSIL 164
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYS 212
+MGGG+WDR+TV+RALRAAYNNPERAVEYLYS
Sbjct: 165 EMGGGTWDRDTVLRALRAAYNNPERAVEYLYS 196
>gi|414589472|tpg|DAA40043.1| TPA: hypothetical protein ZEAMMB73_722140 [Zea mays]
Length = 225
Score = 212 bits (540), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 119/183 (65%), Positives = 137/183 (74%), Gaps = 9/183 (4%)
Query: 182 MGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQA 241
MGGG WDR+TV+RALR AYNNPERAVEYLYSGIPEQ VP + Q NP QA
Sbjct: 1 MGGGIWDRDTVLRALRVAYNNPERAVEYLYSGIPEQMDVP---TSPPSIQPVNPVQAAQA 57
Query: 242 QQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQ 301
Q AAP SGPNANPLDLFPQ LPN +NAG G LD LRN+ QFQ L +VQANPQILQ
Sbjct: 58 AQTAAP---SGPNANPLDLFPQSLPNASANAGTGNLDVLRNNVQFQNLLGLVQANPQILQ 114
Query: 302 PMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGN--VLGQLASAMPQAVTVTPEER 359
P+LQELGKQNP +M+LIQE+Q +F+R+INEP+EG E N +L Q+A A + + VTPEE
Sbjct: 115 PLLQELGKQNPQVMQLIQENQAEFMRMINEPLEGDEENEMMLDQMADA-AETIAVTPEEN 173
Query: 360 EAI 362
EAI
Sbjct: 174 EAI 176
>gi|414885366|tpg|DAA61380.1| TPA: hypothetical protein ZEAMMB73_350633 [Zea mays]
Length = 221
Score = 211 bits (537), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 115/183 (62%), Positives = 135/183 (73%), Gaps = 13/183 (7%)
Query: 182 MGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQA 241
MGGG+WDR+TV+RALRAAYNNPERAVEYLYSGIPEQ VP A + P QA
Sbjct: 1 MGGGTWDRDTVLRALRAAYNNPERAVEYLYSGIPEQMEVP------APPPSSQPVDPVQA 54
Query: 242 QQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQ 301
QPA +GPNANPLDLFPQ LPN +NA G LD LRN+ QFQ L +VQANPQILQ
Sbjct: 55 VQPA----QAGPNANPLDLFPQSLPNDSANANTGNLDVLRNNSQFQNLLGLVQANPQILQ 110
Query: 302 PMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGN--VLGQLASAMPQAVTVTPEER 359
P+LQEL KQNP +M+LIQE+Q +F+RLI+EP+EG E N +L Q+A A + + VTPEE
Sbjct: 111 PLLQELRKQNPRVMQLIQENQAEFMRLISEPLEGDEENEMMLDQMADAT-ETIAVTPEEN 169
Query: 360 EAI 362
EAI
Sbjct: 170 EAI 172
>gi|358346473|ref|XP_003637292.1| RAD23 protein [Medicago truncatula]
gi|355503227|gb|AES84430.1| RAD23 protein [Medicago truncatula]
Length = 213
Score = 199 bits (507), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 111/190 (58%), Positives = 133/190 (70%), Gaps = 26/190 (13%)
Query: 182 MGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQA 241
MGGGSWDR+TV RALRAA+NNPERAV+YLYSGIPE V A A
Sbjct: 1 MGGGSWDRDTVNRALRAAFNNPERAVDYLYSGIPEAAEV----------------AVPAA 44
Query: 242 QQPAAPAPTSG---------PNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTM 292
Q P+ P T G PN++PL++FPQ + G+ AGAG+LDFLRN+ QFQALRTM
Sbjct: 45 QYPSNPTETGGVTTGVVPGVPNSSPLNMFPQETIS-GAGAGAGSLDFLRNNPQFQALRTM 103
Query: 293 VQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAV 352
VQ+NPQILQP+LQELGKQNP L+RLI EH ++FL+LINEP++G EG+ Q MP AV
Sbjct: 104 VQSNPQILQPVLQELGKQNPGLLRLIDEHHSEFLQLINEPMDGTEGDNFDQAEQDMPHAV 163
Query: 353 TVTPEEREAI 362
VTP E+EAI
Sbjct: 164 NVTPAEQEAI 173
>gi|90079451|dbj|BAE89405.1| unnamed protein product [Macaca fascicularis]
Length = 409
Score = 198 bits (503), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 148/395 (37%), Positives = 210/395 (53%), Gaps = 56/395 (14%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V +KTL+ F+I++ PE+ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSS--GASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPT 118
E K+ E +FVVVM+TK K S+ A+T +APA+ TSS T Q T APT
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVSTPAPATTQQSAPASTTAITSSTATTVAQAPTPVPALAPT 120
Query: 119 VAPPQSVPESAPPPAAPAPAPA---PAPAPAPAPAPV-------------SSVSDVYGQA 162
P S P SA + PAPA A PA PA PV SS S+++ A
Sbjct: 121 STPASSTPASATASSEPAPASATKQEKPAEKPAETPVATSPTATDSTSGDSSRSNLFEDA 180
Query: 163 ASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP---EQTA 219
S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP E A
Sbjct: 181 TSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQA 237
Query: 220 V--PPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTL 277
V PP A ++ Q+ A +SG G P L
Sbjct: 238 VVDPPQAASTGAPQSSAVAAAAATTTATTTTTSSG-----------GHP----------L 276
Query: 278 DFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG- 336
+FLRN QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F++++NEPV+
Sbjct: 277 EFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAG 336
Query: 337 --------EGNVLGQLASAMPQAVTVTPEEREAIE 363
+ + S + VTP+E+EAIE
Sbjct: 337 GQGGGGGGGSGGIAEAGSGHMNYIQVTPQEKEAIE 371
>gi|410225240|gb|JAA09839.1| RAD23 homolog B [Pan troglodytes]
Length = 409
Score = 197 bits (501), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 149/400 (37%), Positives = 213/400 (53%), Gaps = 66/400 (16%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V +KTL+ F+I++ PE+ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSS--GASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPT 118
E K+ E +FVVVM+TK K S+ A+T +APA+ T S T Q + P P
Sbjct: 61 EYKIEEKNFVVVMVTKPKAVSTPAPATTQQSAPASTTAVTCSTTTTVAQ----APIPVPA 116
Query: 119 VAPPQSVPESAPPPAAPA---PAPAPA-----PAPAPAPAPV-------------SSVSD 157
+A P S P S PP +A A PAPA A PA PA PV SS S+
Sbjct: 117 LA-PTSTPASIPPASATASSEPAPASAAKQEKPAEKPAETPVATSPTATDSTSGDSSRSN 175
Query: 158 VYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP-- 215
++ A S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP
Sbjct: 176 LFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGD 232
Query: 216 -EQTAV--PPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNA 272
E AV PP A ++ Q+ A +SG G P
Sbjct: 233 RESQAVVDPPQAASTGAPQSSAVAAAAATTTATTTTTSSG-----------GHP------ 275
Query: 273 GAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP 332
L+FLRN QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F++++NEP
Sbjct: 276 ----LEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEP 331
Query: 333 VEGG---------EGNVLGQLASAMPQAVTVTPEEREAIE 363
V+ + + S + VTP+E+EAIE
Sbjct: 332 VQEAGGQGGGGGGGSGGIAEAGSGHMNYIQVTPQEKEAIE 371
>gi|4506387|ref|NP_002865.1| UV excision repair protein RAD23 homolog B isoform 1 [Homo sapiens]
gi|397479268|ref|XP_003810947.1| PREDICTED: UV excision repair protein RAD23 homolog B-like isoform
1 [Pan paniscus]
gi|426362613|ref|XP_004048452.1| PREDICTED: UV excision repair protein RAD23 homolog B-like isoform
1 [Gorilla gorilla gorilla]
gi|1709985|sp|P54727.1|RD23B_HUMAN RecName: Full=UV excision repair protein RAD23 homolog B;
Short=HR23B; Short=hHR23B; AltName: Full=XP-C
repair-complementing complex 58 kDa protein; Short=p58
gi|498148|dbj|BAA04652.1| XP-C repair complementing protein (p58/HHR23B) [Homo sapiens]
gi|24414631|gb|AAN47194.1| RAD23 homolog B (S. cerevisiae) [Homo sapiens]
gi|60819839|gb|AAX36514.1| RAD23-like B [synthetic construct]
gi|61363174|gb|AAX42348.1| RAD23-like B [synthetic construct]
gi|119579421|gb|EAW59017.1| RAD23 homolog B (S. cerevisiae), isoform CRA_b [Homo sapiens]
gi|193785017|dbj|BAG54170.1| unnamed protein product [Homo sapiens]
gi|261858390|dbj|BAI45717.1| RAD23 homolog B [synthetic construct]
Length = 409
Score = 196 bits (499), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 147/395 (37%), Positives = 209/395 (52%), Gaps = 56/395 (14%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V +KTL+ F+I++ PE+ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSS--GASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPT 118
E K+ E +FVVVM+TK K S+ A+T +APA+ TSS T Q T APT
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVSTPAPATTQQSAPASTTAVTSSTTTTVAQAPTPVPALAPT 120
Query: 119 VAPPQSVPESAPPPAAPAPAPA---PAPAPAPAPAPV-------------SSVSDVYGQA 162
P P SA + PAPA A PA PA PV SS S+++ A
Sbjct: 121 STPASITPASATASSEPAPASAAKQEKPAEKPAETPVATSPTATDSTSGDSSRSNLFEDA 180
Query: 163 ASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP---EQTA 219
S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP E A
Sbjct: 181 TSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQA 237
Query: 220 V--PPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTL 277
V PP A ++ Q+ A +SG G P L
Sbjct: 238 VVDPPQAASTGAPQSSAVAAAAATTTATTTTTSSG-----------GHP----------L 276
Query: 278 DFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG- 336
+FLRN QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F++++NEPV+
Sbjct: 277 EFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAG 336
Query: 337 --------EGNVLGQLASAMPQAVTVTPEEREAIE 363
+ + S + VTP+E+EAIE
Sbjct: 337 GQGGGGGGGSGGIAEAGSGHMNYIQVTPQEKEAIE 371
>gi|54696272|gb|AAV38508.1| RAD23 homolog B (S. cerevisiae) [synthetic construct]
gi|54696274|gb|AAV38509.1| RAD23 homolog B (S. cerevisiae) [synthetic construct]
gi|60654195|gb|AAX29790.1| RAD23-like B [synthetic construct]
gi|60831141|gb|AAX36959.1| RAD23-like B [synthetic construct]
gi|61365892|gb|AAX42780.1| RAD23-like B [synthetic construct]
gi|61365900|gb|AAX42781.1| RAD23-like B [synthetic construct]
Length = 410
Score = 196 bits (499), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 147/395 (37%), Positives = 209/395 (52%), Gaps = 56/395 (14%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V +KTL+ F+I++ PE+ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSS--GASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPT 118
E K+ E +FVVVM+TK K S+ A+T +APA+ TSS T Q T APT
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVSTPAPATTQQSAPASTTAVTSSTTTTVAQAPTPVPALAPT 120
Query: 119 VAPPQSVPESAPPPAAPAPAPA---PAPAPAPAPAPV-------------SSVSDVYGQA 162
P P SA + PAPA A PA PA PV SS S+++ A
Sbjct: 121 STPASITPASATASSEPAPASAAKQEKPAEKPAETPVATSPTATDSTSGDSSRSNLFEDA 180
Query: 163 ASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP---EQTA 219
S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP E A
Sbjct: 181 TSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQA 237
Query: 220 V--PPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTL 277
V PP A ++ Q+ A +SG G P L
Sbjct: 238 VVDPPQAASTGAPQSSAVAAAAATTTATTTTTSSG-----------GHP----------L 276
Query: 278 DFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG- 336
+FLRN QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F++++NEPV+
Sbjct: 277 EFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAG 336
Query: 337 --------EGNVLGQLASAMPQAVTVTPEEREAIE 363
+ + S + VTP+E+EAIE
Sbjct: 337 GQGGGGGGGSGGIAEAGSGHMNYIQVTPQEKEAIE 371
>gi|194374237|dbj|BAG57014.1| unnamed protein product [Homo sapiens]
Length = 403
Score = 196 bits (499), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 147/395 (37%), Positives = 209/395 (52%), Gaps = 56/395 (14%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V +KTL+ F+I++ PE+ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSS--GASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPT 118
E K+ E +FVVVM+TK K S+ A+T +APA+ TSS T Q T APT
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVSTPAPATTQQSAPASTTAVTSSTTTTVAQAPTPVPALAPT 120
Query: 119 VAPPQSVPESAPPPAAPAPAPA---PAPAPAPAPAPV-------------SSVSDVYGQA 162
P P SA + PAPA A PA PA PV SS S+++ A
Sbjct: 121 STPASITPASATASSEPAPASAAKQEKPAEKPAETPVATSPTATDSTSGDSSRSNLFEDA 180
Query: 163 ASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP---EQTA 219
S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP E A
Sbjct: 181 TSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQA 237
Query: 220 V--PPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTL 277
V PP A ++ Q+ A +SG G P L
Sbjct: 238 VVDPPQAASTGAPQSSAVAAAAATTTATTTTTSSG-----------GHP----------L 276
Query: 278 DFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG- 336
+FLRN QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F++++NEPV+
Sbjct: 277 EFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAG 336
Query: 337 --------EGNVLGQLASAMPQAVTVTPEEREAIE 363
+ + S + VTP+E+EAIE
Sbjct: 337 GQGGGGGGGSGGIAEAGSGHMNYIQVTPQEKEAIE 371
>gi|410259964|gb|JAA17948.1| RAD23 homolog B [Pan troglodytes]
Length = 409
Score = 196 bits (498), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 145/395 (36%), Positives = 207/395 (52%), Gaps = 56/395 (14%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V +KTL+ F+I++ PE+ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSS--GASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPT 118
E K+ E +FVVVM+TK K S+ A+T +APA+ T S T Q APT
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVSTPAPATTQQSAPASTTAVTCSTTTTVAQAPIPVPALAPT 120
Query: 119 VAPPQSVPESAPPPAAPAPAPA---PAPAPAPAPAPV-------------SSVSDVYGQA 162
P P SA + PAPA A PA PA PV SS S+++ A
Sbjct: 121 STPASITPASATASSEPAPASAAKQEKPAEKPAETPVATSPTATDSTSGDSSRSNLFEDA 180
Query: 163 ASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP---EQTA 219
S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP E A
Sbjct: 181 TSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQA 237
Query: 220 V--PPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTL 277
V PP A ++ Q+ A +SG G P L
Sbjct: 238 VVDPPQAASTGAPQSSAVAAAAATTTATTTTTSSG-----------GHP----------L 276
Query: 278 DFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG- 336
+FLRN QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F++++NEPV+
Sbjct: 277 EFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAG 336
Query: 337 --------EGNVLGQLASAMPQAVTVTPEEREAIE 363
+ + S + VTP+E+EAIE
Sbjct: 337 GQGGGGGGGSGGIAEAGSGHMNYIQVTPQEKEAIE 371
>gi|387849175|ref|NP_001248717.1| UV excision repair protein RAD23 homolog B [Macaca mulatta]
gi|380815240|gb|AFE79494.1| UV excision repair protein RAD23 homolog B [Macaca mulatta]
gi|380815242|gb|AFE79495.1| UV excision repair protein RAD23 homolog B [Macaca mulatta]
gi|380815244|gb|AFE79496.1| UV excision repair protein RAD23 homolog B [Macaca mulatta]
gi|380815246|gb|AFE79497.1| UV excision repair protein RAD23 homolog B [Macaca mulatta]
gi|383410191|gb|AFH28309.1| UV excision repair protein RAD23 homolog B [Macaca mulatta]
gi|384942154|gb|AFI34682.1| UV excision repair protein RAD23 homolog B [Macaca mulatta]
Length = 409
Score = 196 bits (497), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 147/395 (37%), Positives = 209/395 (52%), Gaps = 56/395 (14%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V +KTL+ F+I++ PE+ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSS--GASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPT 118
E K+ E +FVVVM+TK K S+ A+T +APA+ TSS T Q T APT
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVSTPAPATTQQSAPASTTAITSSTATTVAQAPTPVPALAPT 120
Query: 119 VAPPQSVPESAPPPAAPAPAPA---PAPAPAPAPAPV-------------SSVSDVYGQA 162
P P SA + PAPA A PA PA PV SS S+++ A
Sbjct: 121 STPASITPASATASSEPAPASATKQEKPAEKPAETPVATSPTATDSTSGDSSRSNLFEDA 180
Query: 163 ASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP---EQTA 219
S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP E A
Sbjct: 181 TSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQA 237
Query: 220 V--PPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTL 277
V PP A ++ Q+ A +SG G P L
Sbjct: 238 VVDPPQAASTGAPQSSAVAAAAATTTATTTTTSSG-----------GHP----------L 276
Query: 278 DFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG- 336
+FLRN QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F++++NEPV+
Sbjct: 277 EFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAG 336
Query: 337 --------EGNVLGQLASAMPQAVTVTPEEREAIE 363
+ + S + VTP+E+EAIE
Sbjct: 337 GQGGGGGGGSGGIAEAGSGHMNYIQVTPQEKEAIE 371
>gi|291382841|ref|XP_002708173.1| PREDICTED: UV excision repair protein RAD23 homolog B [Oryctolagus
cuniculus]
Length = 409
Score = 196 bits (497), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 140/395 (35%), Positives = 213/395 (53%), Gaps = 56/395 (14%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V +KTL+ F+I++ PE+ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E K+ E +FVVVM+TK K ++ A + +N A TT+ + T+T T S TPAP +A
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVTTPAPATTQQ-SNSATTTAVSSSTATAVTQAS-TPAPALA 118
Query: 121 PPQSVPESAPPPAAPAPAPAPA-------PAPAPAPAPVSSV-------------SDVYG 160
P S P S P + + PAPA PA P PV++ S+++
Sbjct: 119 PT-STPASIAPASTTSSEPAPASATKQEKPAEKPVETPVATSPTSTDSTSGDSSRSNLFE 177
Query: 161 QAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAV 220
A S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP
Sbjct: 178 DATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIP----- 229
Query: 221 PPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGT--LD 278
G+ +Q + P A A T P ++ + + +G L+
Sbjct: 230 ------------GDRESQAVVEPPQA-AGTGAPQSSAVAAGAATTTATTTTTSSGGHPLE 276
Query: 279 FLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVE---- 334
FLRN QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F++++NEPV+
Sbjct: 277 FLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGS 336
Query: 335 ------GGEGNVLGQLASAMPQAVTVTPEEREAIE 363
G + + S + VTP+E+EAIE
Sbjct: 337 QGGGGGGSGNAGIAEAGSGHMNYIQVTPQEKEAIE 371
>gi|18089249|gb|AAH20973.1| RAD23B protein [Homo sapiens]
gi|61361084|gb|AAX41987.1| RAD23-like B [synthetic construct]
gi|123994101|gb|ABM84652.1| RAD23 homolog B (S. cerevisiae) [synthetic construct]
gi|124126815|gb|ABM92180.1| RAD23 homolog B (S. cerevisiae) [synthetic construct]
Length = 409
Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 147/395 (37%), Positives = 209/395 (52%), Gaps = 56/395 (14%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V +KTL+ F+I++ PE+ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSS--GASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPT 118
E K+ E +FVVVM+TK K S+ A+T +APA+ TSS T Q T APT
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVSTPAPATTQQSAPASTTAVTSSTTTTVAQAPTPVPALAPT 120
Query: 119 VAPPQSVPESAPPPAAPAPAPA---PAPAPAPAPAPV-------------SSVSDVYGQA 162
P P SA + PAPA A PA PA PV SS S+++ A
Sbjct: 121 STPASITPASATASSEPAPASAAKQEKPAEKPAETPVATSPTATDSTSGDSSRSNLFEDA 180
Query: 163 ASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP---EQTA 219
S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP E A
Sbjct: 181 TSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQA 237
Query: 220 V--PPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTL 277
V PP A ++ Q+ A +SG G P L
Sbjct: 238 VVDPPQAASTGVPQSSAVAAAAATTTATTTTTSSG-----------GHP----------L 276
Query: 278 DFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG- 336
+FLRN QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F++++NEPV+
Sbjct: 277 EFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAG 336
Query: 337 --------EGNVLGQLASAMPQAVTVTPEEREAIE 363
+ + S + VTP+E+EAIE
Sbjct: 337 GQGGGGGGGSGGIAEAGSGHMNYIQVTPQEKEAIE 371
>gi|61370793|gb|AAX43553.1| RAD23-like B [synthetic construct]
Length = 410
Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 147/395 (37%), Positives = 209/395 (52%), Gaps = 56/395 (14%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V +KTL+ F+I++ PE+ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSS--GASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPT 118
E K+ E +FVVVM+TK K S+ A+T +APA+ TSS T Q T APT
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVSTPAPATTQQSAPASTTAVTSSTTTTVAQAPTPVPALAPT 120
Query: 119 VAPPQSVPESAPPPAAPAPAPA---PAPAPAPAPAPV-------------SSVSDVYGQA 162
P P SA + PAPA A PA PA PV SS S+++ A
Sbjct: 121 STPASITPASATASSEPAPASAAKQEKPAEKPAETPVATSPTATDSTSGDSSRSNLFEDA 180
Query: 163 ASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP---EQTA 219
S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP E A
Sbjct: 181 TSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQA 237
Query: 220 V--PPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTL 277
V PP A ++ Q+ A +SG G P L
Sbjct: 238 VVDPPQAASTGVPQSSAVAAAAATTTATTTTTSSG-----------GHP----------L 276
Query: 278 DFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG- 336
+FLRN QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F++++NEPV+
Sbjct: 277 EFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAG 336
Query: 337 --------EGNVLGQLASAMPQAVTVTPEEREAIE 363
+ + S + VTP+E+EAIE
Sbjct: 337 GQGGGGGGGSGGIAEAGSGHMNYIQVTPQEKEAIE 371
>gi|402896747|ref|XP_003911450.1| PREDICTED: UV excision repair protein RAD23 homolog B-like [Papio
anubis]
Length = 409
Score = 195 bits (495), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 146/395 (36%), Positives = 208/395 (52%), Gaps = 56/395 (14%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V +KTL+ F+I++ PE+ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSS--GASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPT 118
E K+ E +FVVVM+TK K S+ A+T +APA+ TSS T Q T APT
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVSTPAPATTQQSAPASTTAVTSSTATTVAQAPTPVPALAPT 120
Query: 119 VAPPQSVPESAPPPAAPAPAPA---PAPAPAPAPAPV-------------SSVSDVYGQA 162
P P SA + PAPA A P PA PV SS S+++ A
Sbjct: 121 STPASITPASATASSEPAPASATKQEKPTEKPAETPVATSPTATDSTSGDSSRSNLFEDA 180
Query: 163 ASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP---EQTA 219
S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP E A
Sbjct: 181 TSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQA 237
Query: 220 V--PPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTL 277
V PP A ++ Q+ A +SG G P L
Sbjct: 238 VVDPPQAASTGAPQSSAVAAAAATTTATTTTTSSG-----------GHP----------L 276
Query: 278 DFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG- 336
+FLRN QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F++++NEPV+
Sbjct: 277 EFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAG 336
Query: 337 --------EGNVLGQLASAMPQAVTVTPEEREAIE 363
+ + S + VTP+E+EAIE
Sbjct: 337 GQGGGGGGGSGGIAEAGSGHMNYIQVTPQEKEAIE 371
>gi|1044899|emb|CAA63146.1| MHR23B [Mus musculus]
gi|20380714|gb|AAH27747.1| RAD23b homolog (S. cerevisiae) [Mus musculus]
gi|148670319|gb|EDL02266.1| RAD23b homolog (S. cerevisiae), isoform CRA_c [Mus musculus]
gi|1587278|prf||2206377B MHR23B gene
Length = 416
Score = 193 bits (491), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 140/401 (34%), Positives = 207/401 (51%), Gaps = 61/401 (15%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V +KTL+ F+I++ PE+ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILSDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGA------------STVSAAPANQAQTTSSAPPTSTQP 108
E K+ E +FVVVM+TK K ++ +TVS++PA A + P
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVTTAVPATTQPSSTPSPTTVSSSPAVAAAQAPAPTPALAPT 120
Query: 109 TT-TSQTPAPTVAPPQSVPESAPPPAAPAPAPA-----PAPAPAPAPAPVSSVSDVYGQA 162
+T S TPA T A + P A P PA PA +PAPA + SS S+++ A
Sbjct: 121 STPASTTPASTTASSEPAPAGATQPEKPAEKPAQTPVLTSPAPADSTPGDSSRSNLFEDA 180
Query: 163 ASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP----EQT 218
S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP Q
Sbjct: 181 TSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQA 237
Query: 219 AVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLD 278
V P PP P +PA + + +G L+
Sbjct: 238 VVDP------------PPQAVSTGTPQSPAVAAAAATT--------TATTTTTSGGHPLE 277
Query: 279 FLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG-- 336
FLRN QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F++++NEPV+
Sbjct: 278 FLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGG 337
Query: 337 --------------EGNVLGQLASAMPQAVTVTPEEREAIE 363
G + + S + VTP+E+EAIE
Sbjct: 338 QGGGGGGGGGGGGGGGGGIAEAGSGHMNYIQVTPQEKEAIE 378
>gi|301762141|ref|XP_002916489.1| PREDICTED: UV excision repair protein RAD23 homolog B-like
[Ailuropoda melanoleuca]
Length = 408
Score = 193 bits (490), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 137/391 (35%), Positives = 204/391 (52%), Gaps = 49/391 (12%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M V +KTL+ F+I++ P++ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MLVTLKTLQQQTFKIDIDPDETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSS--GASTVSAAPANQAQTTSSAPPTSTQPTTT------- 111
E K+ E +FVVVM+TK K ++ A+T + PA +SS P Q
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVTTPAPATTQQSNPATTTTVSSSTAPAVAQAPAPAPTLAPT 120
Query: 112 ----SQTPAPTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPV------SSVSDVYGQ 161
S TPAPT A + P SA P PA PA P A +P SS S+++
Sbjct: 121 PSPASVTPAPTTASSEPAPASATQPEKPAEKPAETPV-ATSPTATDSTSGDSSRSNLFED 179
Query: 162 AASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP 221
A S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP
Sbjct: 180 ATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIP------ 230
Query: 222 PVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLR 281
G+ +Q P A + + P++ +N G L+FLR
Sbjct: 231 -----------GDRDSQAVVDTPPAVSTGAPPSSVAAAAATTTASTTTANPGGHPLEFLR 279
Query: 282 NSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG----- 336
N QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F++++NEPV+
Sbjct: 280 NQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQGG 339
Query: 337 ----EGNVLGQLASAMPQAVTVTPEEREAIE 363
+ + S + VTP+E+EAIE
Sbjct: 340 GGGGGSGGIAEAGSGHMNYIQVTPQEKEAIE 370
>gi|332222429|ref|XP_003260372.1| PREDICTED: UV excision repair protein RAD23 homolog B isoform 1
[Nomascus leucogenys]
Length = 409
Score = 192 bits (488), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 145/395 (36%), Positives = 207/395 (52%), Gaps = 56/395 (14%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V +KTL+ F I++ P++ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQVTLKTLQQLTFWIDIDPDETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSS--GASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPT 118
E K+ E +FVVVM+TK K S+ A+T +APA+ TSS T Q T APT
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVSTPAPATTQQSAPASTTAVTSSTATTVAQAPTPVPALAPT 120
Query: 119 VAPPQSVPESAPPPAAPAPAPA---PAPAPAPAPAPV-------------SSVSDVYGQA 162
P P S + PAPA A PA PA PV SS S+++ A
Sbjct: 121 STPASITPASVTASSEPAPASATKQEKPAEKPAETPVATSPTATDSTSGDSSRSNLFEDA 180
Query: 163 ASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP---EQTA 219
S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP E A
Sbjct: 181 TSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQA 237
Query: 220 V--PPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTL 277
V PP A ++ Q+ A +SG G P L
Sbjct: 238 VVDPPQAASTGAPQSSAVAAAAATTTATTTTTSSG-----------GHP----------L 276
Query: 278 DFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG- 336
+FLRN QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F++++NEPV+
Sbjct: 277 EFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAG 336
Query: 337 --------EGNVLGQLASAMPQAVTVTPEEREAIE 363
+ + S + VTP+E+EAIE
Sbjct: 337 GQGGGGGGGSGGIAEAGSGHMNYIQVTPQEKEAIE 371
>gi|383420441|gb|AFH33434.1| UV excision repair protein RAD23 homolog B [Macaca mulatta]
Length = 372
Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 149/395 (37%), Positives = 210/395 (53%), Gaps = 56/395 (14%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V +KTL+ F+I++ PE+ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSS--GASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPT 118
E K+ E +FVVVM+TK K S+ A+T +APA+ TSS T Q T APT
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVSTPAPATTQQSAPASTTAITSSTATTVAQAPTPVPALAPT 120
Query: 119 VAPPQSVPESAPPPAAPAPAPA---PAPAPAPAPAPV-------------SSVSDVYGQA 162
P P SA + PAPA A PA PA PV SS S+++ A
Sbjct: 121 STPASITPASATASSEPAPASATKQEKPAEKPAETPVATSPTATDSTSGDSSRSNLFEDA 180
Query: 163 ASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP---EQTA 219
S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP E A
Sbjct: 181 TSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQA 237
Query: 220 V--PPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTL 277
V PP A ++ Q+ A +SG G P L
Sbjct: 238 VVDPPQAASTGAPQSSAVAAAAATTTATTTTTSSG-----------GHP----------L 276
Query: 278 DFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGE 337
+FLRN QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F++++NEPV+
Sbjct: 277 EFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAG 336
Query: 338 GNVLGQLASAMPQA---------VTVTPEEREAIE 363
G G + A + VTP+E+EAIE
Sbjct: 337 GQGGGGGGGSGGIAEPGNGPMNYIQVTPQEKEAIE 371
>gi|62898690|dbj|BAD97199.1| UV excision repair protein RAD23 homolog B variant [Homo sapiens]
Length = 409
Score = 191 bits (486), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 145/394 (36%), Positives = 207/394 (52%), Gaps = 56/394 (14%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V +KTL+ F+I++ PE+ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSS--GASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPT 118
E K+ E +FVVVM+TK K S+ A+T +APA+ TSS T Q T APT
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVSTPAPATTQQSAPASTTAVTSSTTTTVAQAPTPVPALAPT 120
Query: 119 VAPPQSVPESAPPPAAPAPAPA---PAPAPAPAPAPV-------------SSVSDVYGQA 162
P P SA + PAPA A PA PA PV SS S+++ A
Sbjct: 121 STPASITPASATASSEPAPASAAKQEKPAEKPAETPVATSPTATDSTSGDSSRSNLFEDA 180
Query: 163 ASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP---EQTA 219
S LV G + E V +I+ MG ++RE VI ALRA++NNP+R VEYL GIP E A
Sbjct: 181 TSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRGVEYLLMGIPGDRESQA 237
Query: 220 V--PPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTL 277
V PP A ++ Q+ A +SG G P L
Sbjct: 238 VVDPPQAASTGVPQSSAVAAAAATTTATTTTTSSG-----------GHP----------L 276
Query: 278 DFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG- 336
+FLRN QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F++++NEPV+
Sbjct: 277 EFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAG 336
Query: 337 --------EGNVLGQLASAMPQAVTVTPEEREAI 362
+ + S + VTP+E+EAI
Sbjct: 337 GQGGGGGGGSGGIAEAGSGHMNYIQVTPQEKEAI 370
>gi|57094213|ref|XP_538778.1| PREDICTED: UV excision repair protein RAD23 homolog B isoform 2
[Canis lupus familiaris]
Length = 406
Score = 191 bits (485), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 134/392 (34%), Positives = 203/392 (51%), Gaps = 53/392 (13%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M V +KTL+ F+I++ P++ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MLVTLKTLQQQTFKIDIDPDETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E K+ E +FVVVM+TK K +T + A Q+ ++ +S+ T Q PAP V
Sbjct: 61 EYKIDEKNFVVVMVTKPK----AVTTPAPATTQQSNPATTTTVSSSTAPTVVQAPAPPVL 116
Query: 121 PPQSVPESAPPPAAPAPAPAPA-------PAPAPAPAPV-------------SSVSDVYG 160
P P S P A + PAP PA PA PV SS S+++
Sbjct: 117 APTPSPASVTPAPATSSEPAPTSVTQQEKPAEKPAETPVATSPTATDSTSGDSSRSNLFE 176
Query: 161 QAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAV 220
A S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP
Sbjct: 177 DATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIP----- 228
Query: 221 PPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFL 280
G+ +Q P A + + P++ ++ G L+FL
Sbjct: 229 ------------GDRESQAVVDTPPAVSTGAPPSSVAAAAATTTASTTTASPGGHPLEFL 276
Query: 281 RNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG---- 336
RN QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F++++NEPV+
Sbjct: 277 RNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQG 336
Query: 337 -----EGNVLGQLASAMPQAVTVTPEEREAIE 363
+ + S + VTP+E+EAIE
Sbjct: 337 GGGGGGSGGIAEAGSGHMNYIQVTPQEKEAIE 368
>gi|384248073|gb|EIE21558.1| UV excision repair protein Rad23 [Coccomyxa subellipsoidea C-169]
Length = 382
Score = 191 bits (484), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 152/370 (41%), Positives = 204/370 (55%), Gaps = 35/370 (9%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+KV KT++G FE+E+ DK+ +VK+ IE VQG+D +PA+ Q++I+QGKVLKD TTLE
Sbjct: 4 VKVTFKTVQGNKFELELDSSDKIENVKQKIEGVQGAD-FPAANQVIIYQGKVLKDDTTLE 62
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
EN K++ V A +A + P + T + A A
Sbjct: 63 EN---------------KITHENFVVVMIQRARKAASPKKEEPAAPTTTAPAPAEAAPTA 107
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P VP P AA A A APA A ++S ++L+ G+ LE+T+ I+
Sbjct: 108 PAAEVPAQQPRAAAVPAAAAAAPAAGAAAGDLNS---------NSLLMGTQLESTIAGIV 158
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
+MG +DRE V+RA+RAA+NNP+RAVEYL +GIP P A ++ A
Sbjct: 159 EMG---FDREEVVRAMRAAFNNPDRAVEYLMTGIPNNVEAPAPAPGASPAAGAVSAAPAA 215
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGT--LDFLRNSQQFQALRTMVQANPQ 298
P SGPNA PLD+F P AG LDFLR++ QF ALR +VQ+NP
Sbjct: 216 GTPATGGGPASGPNAQPLDMFAPQAPAGAGGAGGAAGPLDFLRSNPQFIALRQIVQSNPM 275
Query: 299 ILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP--VEGGEGNVLGQLASAMP---QAVT 353
ILQPMLQELGKQNP L+ LI +Q +FLR+INEP V V L +A+P AV
Sbjct: 276 ILQPMLQELGKQNPELLTLINANQQEFLRIINEPPSVIMFWLTVRLLLFAALPPGAVAVH 335
Query: 354 VTPEEREAIE 363
+T EE+ AI+
Sbjct: 336 LTEEEQAAIQ 345
>gi|363744612|ref|XP_429175.3| PREDICTED: UV excision repair protein RAD23 homolog B [Gallus
gallus]
Length = 403
Score = 191 bits (484), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 139/393 (35%), Positives = 201/393 (51%), Gaps = 58/393 (14%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++ +KTL+ F I++ PE+ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQITLKTLQQQTFRIDIDPEETVKALKEKIESERGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSKV------------SSSGASTVSAAPANQAQTTSSAPPTSTQP 108
E K+ E +FVVVM+TK K S++G S +AAP ++ P + P
Sbjct: 61 EYKIDEKNFVVVMVTKPKAATAATTATQQTNSTTGVSVTTAAP---TPVSAPTPAAAPVP 117
Query: 109 TTTSQTPAPTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSD-----VYGQAA 163
TPAP +S P S P PA PA AP + S+ D ++ A
Sbjct: 118 APDPTTPAPAAVACESEPVSTPKEEKPAEKPADAPTAVSLSSNESTTGDTSRSNLFEDAI 177
Query: 164 SNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP--EQTAVP 221
S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP Q
Sbjct: 178 SALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDNQAVAE 234
Query: 222 PVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLR 281
P AS G +Q+ AA T +P ++ G L+FLR
Sbjct: 235 PTQAASTG--------TSQSSAVAAAVAT--------------IPTTATSLGGHPLEFLR 272
Query: 282 NSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVL 341
N QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F+ ++NEPV +
Sbjct: 273 NQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIHMLNEPVIESRQGLS 332
Query: 342 GQLASAMPQAVT-----------VTPEEREAIE 363
G SA V VTP+E+EAIE
Sbjct: 333 GSDDSASTGGVAEAGNGHMSYIQVTPQEKEAIE 365
>gi|194698296|gb|ACF83232.1| unknown [Zea mays]
gi|413926353|gb|AFW66285.1| hypothetical protein ZEAMMB73_839350 [Zea mays]
Length = 185
Score = 190 bits (483), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 109/213 (51%), Positives = 133/213 (62%), Gaps = 29/213 (13%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKGTHFEI V+P D + VKKNIE +QG D YP QQ+LI GKVLKD +TLE
Sbjct: 1 MKLTVKTLKGTHFEIRVQPNDTIMAVKKNIEEIQGKDSYPWGQQLLIFNGKVLKDESTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKV E+ F+VVML+K K S S ++ S S TPA A
Sbjct: 61 ENKVNEDGFLVVMLSKGKTSGSTGTSSSQH---------------------SNTPATRQA 99
Query: 121 PPQSVPESAP-PPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQI 179
PP P+ AP PP AP P PA AP + + AASNL++G N++ + Q+
Sbjct: 100 PPLEAPQQAPQPPVAPITTSQPEGLPAQAP-------NTHDNAASNLLSGRNVDTIINQL 152
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYS 212
++MGGGSWD++ V RALRAAYNNPERAVEYLYS
Sbjct: 153 MEMGGGSWDKDKVQRALRAAYNNPERAVEYLYS 185
>gi|171906578|ref|NP_033037.2| UV excision repair protein RAD23 homolog B [Mus musculus]
gi|341941948|sp|P54728.2|RD23B_MOUSE RecName: Full=UV excision repair protein RAD23 homolog B;
Short=HR23B; Short=mHR23B; AltName: Full=XP-C
repair-complementing complex 58 kDa protein; Short=p58
gi|74144435|dbj|BAE36067.1| unnamed protein product [Mus musculus]
gi|74144449|dbj|BAE36071.1| unnamed protein product [Mus musculus]
gi|74145328|dbj|BAE36124.1| unnamed protein product [Mus musculus]
gi|74211909|dbj|BAE29298.1| unnamed protein product [Mus musculus]
Length = 416
Score = 190 bits (482), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 141/408 (34%), Positives = 205/408 (50%), Gaps = 75/408 (18%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V +KTL+ F+I++ PE+ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILSDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQP------------ 108
E K+ E +FVVVM+TK K + +A PA Q +S+ PT+
Sbjct: 61 EYKIDEKNFVVVMVTKPK------AVTTAVPAT-TQPSSTPSPTAVSSSPAVAAAQAPAP 113
Query: 109 --------TTTSQTPAPTVAPPQSVPESAPPPAAPAPAPA-----PAPAPAPAPAPVSSV 155
T S PA T A + P A P PA PA +PAPA + SS
Sbjct: 114 TPALPPTSTPASTAPASTTASSEPAPAGATQPEKPAEKPAQTPVLTSPAPADSTPGDSSR 173
Query: 156 SDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 215
S+++ A S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP
Sbjct: 174 SNLFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIP 230
Query: 216 ----EQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSN 271
Q V P PP P +PA + +
Sbjct: 231 GDRESQAVVDP------------PPQAVSTGTPQSPAVAAAAATT--------TATTTTT 270
Query: 272 AGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINE 331
+G L+FLRN QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F++++NE
Sbjct: 271 SGGHPLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNE 330
Query: 332 PV-EGGE---------------GNVLGQLASAMPQAVTVTPEEREAIE 363
PV E G G + + S + VTP+E+EAIE
Sbjct: 331 PVQEAGSQGGGGGGGGGGGGGGGGGIAEAGSGHMNYIQVTPQEKEAIE 378
>gi|70778952|ref|NP_001020446.1| UV excision repair protein RAD23 homolog B [Rattus norvegicus]
gi|123789085|sp|Q4KMA2.1|RD23B_RAT RecName: Full=UV excision repair protein RAD23 homolog B
gi|68534740|gb|AAH98674.1| RAD23 homolog B (S. cerevisiae) [Rattus norvegicus]
gi|149037170|gb|EDL91701.1| RAD23b homolog (S. cerevisiae), isoform CRA_b [Rattus norvegicus]
Length = 415
Score = 190 bits (482), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 139/400 (34%), Positives = 204/400 (51%), Gaps = 60/400 (15%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V +KTL+ F+I++ PE+ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILSDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGA-------------STVSAAPANQAQTTSSAPPTSTQ 107
E K+ E +FVVVM+TK K +S + S+ A AQ + P +
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVTSAVPATTQQSSSPSTTTVSSSPAAAVAQAPAPTPALAPT 120
Query: 108 PTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPA-----PAPAPAPAPAPVSSVSDVYGQA 162
T S TPA T A + P A P PA PA +PAPA + SS S+++ A
Sbjct: 121 STPASTTPASTTASSEPAPTGATQPEKPAEKPAQTPVLTSPAPADSTPGDSSRSNLFEDA 180
Query: 163 ASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP----EQT 218
S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP Q
Sbjct: 181 TSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQA 237
Query: 219 AVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLD 278
V P PP P +PA + + +G L+
Sbjct: 238 VVDP------------PPQAVSTGTPQSPAVAAAAATT--------TATTTTTSGGHPLE 277
Query: 279 FLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG-- 336
FLRN QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F++++NEPV+
Sbjct: 278 FLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGG 337
Query: 337 -------------EGNVLGQLASAMPQAVTVTPEEREAIE 363
G + + S + VTP+E+EAIE
Sbjct: 338 QGGGGGGGGGGGGGGGGIAEAGSGHMNYIQVTPQEKEAIE 377
>gi|348570354|ref|XP_003470962.1| PREDICTED: UV excision repair protein RAD23 homolog B-like [Cavia
porcellus]
Length = 409
Score = 189 bits (481), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 139/403 (34%), Positives = 208/403 (51%), Gaps = 72/403 (17%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V +KTL+ F+I++ PE+ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTT-----------------SSAPP 103
E K+ E +FVVVM+TK K + + APA Q++ +S P
Sbjct: 61 EYKIDEKNFVVVMVTKPK------AVTTPAPATTQQSSPVSTTTVSSSTATAVAQASTPA 114
Query: 104 TSTQPTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPAPAPAPA---PAPAPV-------- 152
+ PT+ TPAP +AP + S P PA+ A PA PA PA +P
Sbjct: 115 PALAPTS---TPAP-IAPAVTTASSEPVPASAAQQEKPAEKPAETPPASSPTSTDNTSGD 170
Query: 153 SSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYS 212
SS S+++ A S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL
Sbjct: 171 SSRSNLFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLM 227
Query: 213 GIP---EQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMG 269
GIP E AV +A++ G A T+ +P
Sbjct: 228 GIPGDRESQAVVDPPQAASTGAPQASAVAAAGATTTAATTTTSSGGHP------------ 275
Query: 270 SNAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLI 329
L+FLRN QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F++++
Sbjct: 276 -------LEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQML 328
Query: 330 NEPVEGG---------EGNVLGQLASAMPQAVTVTPEEREAIE 363
NEPV+ + + S + VTP+E+EAIE
Sbjct: 329 NEPVQEAGGQGGGGGGGSGGIAEAGSGHMNYIQVTPQEKEAIE 371
>gi|392883244|gb|AFM90454.1| UV excision repair protein RAD23-like B isoform 5 [Callorhinchus
milii]
Length = 378
Score = 189 bits (481), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 141/387 (36%), Positives = 202/387 (52%), Gaps = 70/387 (18%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++ VKTL+ F I+++PE V +K+ IET +G D +P + Q LI+ GK+L D T +
Sbjct: 1 MRITVKTLQQQSFHIQIEPELPVKALKEKIETEKGKDAFPVAGQKLIYAGKILDDETPII 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E K+ E FVVVM+TK K ++P+ QA T A P++ QP +T+ T P V+
Sbjct: 61 EYKIDEEKFVVVMITKPK----------SSPSVQAAATQPATPSTPQPASTTPT-VPPVS 109
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAP-------------------APAPAPVSSVSDVYGQ 161
P + E+ P + A P A SS+ DV
Sbjct: 110 SPTATTETVPTNTSNELNTAEKPTEKSDEISTSTSTSPSASTIRTSGGAQGSSLFDV--- 166
Query: 162 AASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP-EQTAV 220
A S LV G E V +I MG + RE V+ AL+A++NNP+RAVEYL GIP E+T
Sbjct: 167 ATSALVTGQQYETMVTEITSMG---YSREQVVAALKASFNNPDRAVEYLLMGIPGERT-- 221
Query: 221 PPVARASAGG-QAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDF 279
R+S Q A T + QPAAPAPTS N L+F
Sbjct: 222 ----RSSVNNPQQTTGTAWTGSAQPAAPAPTSRENP---------------------LEF 256
Query: 280 LRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGN 339
LRN QF +R ++Q NP +L +L +LG++NPHL++ I +HQ +F++++NEP++
Sbjct: 257 LRNQPQFHQMRQILQQNPSLLPALLHQLGRENPHLLQQISQHQGNFIQMLNEPIQDIANE 316
Query: 340 VLGQLASAMPQ---AVTVTPEEREAIE 363
V + SA Q + VTP+E+EAIE
Sbjct: 317 VA--VTSAGEQQMDHLQVTPQEKEAIE 341
>gi|392883134|gb|AFM90399.1| UV excision repair protein RAD23-like B protein [Callorhinchus
milii]
Length = 378
Score = 189 bits (480), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 137/382 (35%), Positives = 206/382 (53%), Gaps = 60/382 (15%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++ VKTL+ F I+++PE V +K+ IET +G D +P + Q LI+ GK+L D T +
Sbjct: 1 MRITVKTLQQQSFHIQIEPELPVKALKEKIETEKGKDAFPVAGQKLIYAGKILDDETPII 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E K+ E FVVVM+TK K S P+ QA T A P++ QP +T+ T P +
Sbjct: 61 EYKIDEEKFVVVMITKPKSS----------PSVQAAATQPATPSTPQPASTTPTVPPASS 110
Query: 121 P---PQSVP-------ESAPPPAAPAPAPAPAPAPAPAPAPVSSV-----SDVYGQAASN 165
P ++VP +A P + + + + +P+ + + + S ++ A S
Sbjct: 111 PTATTETVPTNTSNELNTAEKPTEKSDETSTSTSTSPSASTIRTSGGAQGSSLFDVATSA 170
Query: 166 LVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVAR 225
LV G E V +I MG + RE V+ AL+A++NNP+RAVEYL GIP + AR
Sbjct: 171 LVTGQQYETMVTEITSMG---YSREQVVAALKASFNNPDRAVEYLLMGIPGER-----AR 222
Query: 226 ASAGG-QAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQ 284
+S Q A T + QPAAPAPTS N L+FLRN
Sbjct: 223 SSVNNPQQTTGTACTGSAQPAAPAPTSRENP---------------------LEFLRNQP 261
Query: 285 QFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQL 344
QF +R ++Q NP +L +L +LG++NPHL++ I +HQ +F++++NEP++ V +
Sbjct: 262 QFHQMRQILQQNPSLLPALLHQLGRENPHLLQQISQHQGNFIQMLNEPIQDIANEVA--V 319
Query: 345 ASAMPQ---AVTVTPEEREAIE 363
SA Q + VTP+E+EAIE
Sbjct: 320 TSAGEQQMDHLQVTPQEKEAIE 341
>gi|392884316|gb|AFM90990.1| UV excision repair protein RAD23-like protein B isoform 5
[Callorhinchus milii]
Length = 378
Score = 189 bits (480), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 137/382 (35%), Positives = 206/382 (53%), Gaps = 60/382 (15%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++ VKTL+ F I+++PE V +K+ IET +G D +P + Q LI+ GK+L D T +
Sbjct: 1 MRITVKTLQQQSFHIQIEPELPVKALKEKIETEKGKDAFPVAGQKLIYAGKILDDETPII 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E K+ E FVVVM+TK K S P+ QA T A P++ QP +T+ T P +
Sbjct: 61 EYKIDEEKFVVVMITKPKSS----------PSVQAAATQPATPSTPQPASTTPTVPPASS 110
Query: 121 P---PQSVP-------ESAPPPAAPAPAPAPAPAPAPAPAPVSSV-----SDVYGQAASN 165
P ++VP +A P + + + + +P+ + + + S ++ A S
Sbjct: 111 PTATTETVPTNTSNELNTAEKPTEKSDETSTSTSTSPSASTIRTSGGAQGSSLFDVATSA 170
Query: 166 LVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVAR 225
LV G E V +I MG + RE V+ AL+A++NNP+RAVEYL GIP + AR
Sbjct: 171 LVTGQQYETMVTEITSMG---YSREQVVAALKASFNNPDRAVEYLLMGIPGER-----AR 222
Query: 226 ASAGG-QAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQ 284
+S Q A T + QPAAPAPTS N L+FLRN
Sbjct: 223 SSVNNPQQTTGTACTGSAQPAAPAPTSRENP---------------------LEFLRNQP 261
Query: 285 QFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQL 344
QF +R ++Q NP +L +L +LG++NPHL++ I +HQ +F++++NEP++ V +
Sbjct: 262 QFHQMRQILQQNPSLLPALLHQLGRENPHLLQQISQHQGNFIQMLNEPIQDIANEVA--V 319
Query: 345 ASAMPQ---AVTVTPEEREAIE 363
SA Q + VTP+E+EAIE
Sbjct: 320 TSAGEQQMDHLQVTPQEKEAIE 341
>gi|395823983|ref|XP_003785253.1| PREDICTED: UV excision repair protein RAD23 homolog B-like
[Otolemur garnettii]
Length = 413
Score = 189 bits (479), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 136/397 (34%), Positives = 205/397 (51%), Gaps = 56/397 (14%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V +KTL+ F+I++ PE+ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSK-VSSSGASTVSAAPANQAQ------------TTSSAPPTSTQ 107
E K+ E +FVVVM+TK K VS+ + +A +N + P +
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVSTPAPAAAAAQQSNPVTTTPVTSSTATTVAQAPTPAPAPA 120
Query: 108 PTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPV------SSVSDVYGQ 161
T S TPA T P+ P SA PA PA P A +P P SS S+++
Sbjct: 121 STPVSVTPASTTTSPEPAPASATKQEKPAEKPAETPV-ATSPTPTDSTSGDSSRSNLFED 179
Query: 162 AASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP 221
A S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP
Sbjct: 180 ATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIP------ 230
Query: 222 PVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPL---DLFPQGLPNMGSNAGAGTLD 278
G+ +Q P A A T P ++ + +++G L+
Sbjct: 231 -----------GDRESQAVVDPPQA-AGTGTPQSSAVAAAAATTTATTTTTTSSGGHPLE 278
Query: 279 FLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG-- 336
FLRN QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F++++NEPV+
Sbjct: 279 FLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGG 338
Query: 337 ----------EGNVLGQLASAMPQAVTVTPEEREAIE 363
+ + S + VTP+E+EAIE
Sbjct: 339 QGGGGGGGGGGSGGIAEAGSGHMNYIQVTPQEKEAIE 375
>gi|392884282|gb|AFM90973.1| UV excision repair protein RAD23-like protein B isoform 5
[Callorhinchus milii]
Length = 378
Score = 189 bits (479), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 138/376 (36%), Positives = 204/376 (54%), Gaps = 48/376 (12%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++ VKTL+ F I+++PE V +K+ IET +G D +P + Q LI+ GK+L D T +
Sbjct: 1 MRITVKTLQQQSFHIQIEPELPVKALKEKIETEKGKDAFPVAGQKLIYAGKILDDETPII 60
Query: 61 ENKVAENSFVVVMLTKSKVSSS--GASTVSAAPAN--QAQTTSSAPPTSTQPTTTSQTPA 116
E K+ E FVVVM+TK K S S A+T A P+ A TT + PP S+ TT P
Sbjct: 61 EYKIDEEKFVVVMITKPKSSPSVQAAATQPATPSTPQPASTTPTVPPASSPTATTETVPT 120
Query: 117 PTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSV-----SDVYGQAASNLVAGSN 171
T + +A P + + + + +P+ + + + S ++ A S LV G
Sbjct: 121 NT----SNELNTAEKPTEKSDETSTSTSTSPSASTIRTSGGAQGSGLFDVATSALVTGQQ 176
Query: 172 LEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGG- 230
E V +I MG + RE V+ AL+A++NNP+RAVEYL GIP + AR+S
Sbjct: 177 YETMVTEITSMG---YSREQVVAALKASFNNPDRAVEYLLMGIPGER-----ARSSVNNP 228
Query: 231 QAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALR 290
Q A T + QPAAPAPTS N L+FLRN QF +R
Sbjct: 229 QQTTGTACTGSAQPAAPAPTSRENP---------------------LEFLRNQPQFHQMR 267
Query: 291 TMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQ 350
++Q NP +L +L +LG++NPHL++ I +HQ +F++++NEP++ V + SA Q
Sbjct: 268 QILQQNPSLLPALLHQLGRENPHLLQQISQHQGNFIQMLNEPIQDIANEVA--VTSAGEQ 325
Query: 351 ---AVTVTPEEREAIE 363
+ VTP+E+EAIE
Sbjct: 326 QMDHLQVTPQEKEAIE 341
>gi|45829444|gb|AAH68193.1| Rad23b protein [Mus musculus]
Length = 415
Score = 187 bits (475), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 141/408 (34%), Positives = 205/408 (50%), Gaps = 76/408 (18%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V +KTL+ F+I++ PE+ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILSDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQP------------ 108
E K+ E +FVVVM+TK K + +A PA Q +S+ PT+
Sbjct: 61 EYKIDEKNFVVVMVTKPK------AVTTAVPAT-TQPSSTPSPTAVSSSPAVAAAQAPAP 113
Query: 109 --------TTTSQTPAPTVAPPQSVPESAPPPAAPAPAPA-----PAPAPAPAPAPVSSV 155
T S PA T A + P A P PA PA +PAPA + SS
Sbjct: 114 TPALPPTSTPASTAPASTTASSEPAPAGATQPEKPAEKPAQTPVLTSPAPADSTPGDSSR 173
Query: 156 SDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 215
S+++ A S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP
Sbjct: 174 SNLFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIP 230
Query: 216 ----EQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSN 271
Q V P PP P +PA + +
Sbjct: 231 GDRESQAVVDP------------PPQAVSTGTPQSPAVAAAAATT--------TATTTTT 270
Query: 272 AGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINE 331
+G L+FLRN QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F++++NE
Sbjct: 271 SGGHPLEFLRNQPQFQQMRQIIQQNPSLL-ALLQQIGRENPQLLQQISQHQEHFIQMLNE 329
Query: 332 PV-EGGE---------------GNVLGQLASAMPQAVTVTPEEREAIE 363
PV E G G + + S + VTP+E+EAIE
Sbjct: 330 PVQEAGSQGGGGGGGGGGGGGGGGGIAEAGSGHMNYIQVTPQEKEAIE 377
>gi|74209288|dbj|BAE25006.1| unnamed protein product [Mus musculus]
Length = 411
Score = 186 bits (472), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 138/403 (34%), Positives = 201/403 (49%), Gaps = 70/403 (17%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V +KTL+ F+I++ PE+ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILSDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQP------------ 108
E K+ E +FVVVM+TK K + +A PA Q +S+ PT+
Sbjct: 61 EYKIDEKNFVVVMVTKPK------AVTTAVPAT-TQPSSTPSPTAVSSSPAVAAAQAPAP 113
Query: 109 --------TTTSQTPAPTVAPPQSVPESAPPPAAPAPAPA-----PAPAPAPAPAPVSSV 155
T S PA T A + P A P PA PA +PAPA + SS
Sbjct: 114 TPALPPTSTPASTAPASTTASSEPAPAGATQPEKPAEKPAQTPVLTSPAPADSTPGDSSR 173
Query: 156 SDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 215
S+++ A S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP
Sbjct: 174 SNLFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIP 230
Query: 216 ----EQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSN 271
Q V P PP P +PA + +
Sbjct: 231 GDRESQAVVDP------------PPQAVSTGTPQSPAVAAAAATT--------TATTTTT 270
Query: 272 AGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINE 331
+G L+FLRN QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F++++NE
Sbjct: 271 SGGHPLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNE 330
Query: 332 PVEGGEGNVLGQLASAMPQA-----------VTVTPEEREAIE 363
PV+ G + VTP+E+EAIE
Sbjct: 331 PVQEAGSQGGGGGGGGGGGGIAEAGSGHMNYIQVTPQEKEAIE 373
>gi|410978805|ref|XP_003995778.1| PREDICTED: UV excision repair protein RAD23 homolog B isoform 1
[Felis catus]
Length = 408
Score = 185 bits (470), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 138/390 (35%), Positives = 204/390 (52%), Gaps = 47/390 (12%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M V +KTL+ F+I++ P++ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MLVTLKTLQQQTFKIDIDPDETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSS--GASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPT 118
E K+ E +FVVVM+TK K ++ A+T + PA +S+ P Q T+ APT
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVTTPAPATTQQSNPATTTTVSSTTAPAVVQVPTSPPALAPT 120
Query: 119 VAPPQSVPESAPPPAAPAPAPA---PAPAPAPAPAPVSSV-------------SDVYGQA 162
P P S + PAPA A PA PA PV++ S+++ A
Sbjct: 121 PTPASITPASTTASSEPAPASATKQEKPAEKPAETPVATSPTSTDSTSGDSSRSNLFEDA 180
Query: 163 ASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPP 222
S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP
Sbjct: 181 TSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGD----- 232
Query: 223 VARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRN 282
R S P T A Q + A + A+ P G P L+FLRN
Sbjct: 233 --RESQAVVDTPPAVSTGAPQSSVAAAAATTTASTTTASPGGHP----------LEFLRN 280
Query: 283 SQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG------ 336
QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F++++NEPV+
Sbjct: 281 QPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQGGG 340
Query: 337 ---EGNVLGQLASAMPQAVTVTPEEREAIE 363
+ + S + VTP+E+EAIE
Sbjct: 341 GGGGSGGIAEAGSGHMNYIQVTPQEKEAIE 370
>gi|74178713|dbj|BAE34014.1| unnamed protein product [Mus musculus]
Length = 416
Score = 185 bits (469), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 130/363 (35%), Positives = 190/363 (52%), Gaps = 59/363 (16%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V +KTL+ F+I++ PE+ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILSDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQP------------ 108
E K+ E +FVVVM+TK K + +A PA Q +S+ PT+
Sbjct: 61 EYKIDEKNFVVVMVTKPK------AVTTAVPAT-TQPSSTPSPTAVSSSPAVAAAQAPAP 113
Query: 109 --------TTTSQTPAPTVAPPQSVPESAPPPAAPAPAPAPAP---APAPAPAP--VSSV 155
T S PA T A + P A P PA PA P +PAPA + SS
Sbjct: 114 TPALPPTSTPASTAPASTTASSEPAPAGATQPEKPAEKPAQTPVLTSPAPADSTPGDSSR 173
Query: 156 SDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 215
S+++ A S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP
Sbjct: 174 SNLFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIP 230
Query: 216 ----EQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSN 271
Q V P PP P +PA + +
Sbjct: 231 GDRESQAVVDP------------PPQAVSTGTPQSPAVAAAAATT--------TATTTTT 270
Query: 272 AGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINE 331
+G L+FLRN QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F++++NE
Sbjct: 271 SGGHPLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNE 330
Query: 332 PVE 334
PV+
Sbjct: 331 PVQ 333
>gi|114052667|ref|NP_001039775.1| UV excision repair protein RAD23 homolog B [Bos taurus]
gi|109892954|sp|Q29RK4.1|RD23B_BOVIN RecName: Full=UV excision repair protein RAD23 homolog B
gi|88954168|gb|AAI14134.1| RAD23 homolog B (S. cerevisiae) [Bos taurus]
gi|296484403|tpg|DAA26518.1| TPA: UV excision repair protein RAD23 homolog B [Bos taurus]
Length = 408
Score = 184 bits (467), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 138/400 (34%), Positives = 200/400 (50%), Gaps = 67/400 (16%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M V +KTL+ F+I++ P++ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MLVTLKTLQQQTFKIDIDPDETVRALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPT----------- 109
E K+ E +FVVVM+TK K + + APA Q+ S+A T + T
Sbjct: 61 EYKIDEKNFVVVMVTKPK------AVTTPAPATTQQSNSAATTTVSSSTAPAVTQAPAPA 114
Query: 110 --------TTSQTPAPTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSV-----S 156
S TPAPT A + P SA PA P P + S+ S
Sbjct: 115 PASAPTPTPVSVTPAPTTASSEPAPASAAKQEKPAERPVETPVATTPTSTDSTSGDSSRS 174
Query: 157 DVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP- 215
+++ A S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP
Sbjct: 175 NLFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPG 231
Query: 216 ---EQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNA 272
Q V P AS G + A +SG G P
Sbjct: 232 DRESQAVVDPPPAASTGAPQSSVAAAAATTTATTTTTSSG-----------GHP------ 274
Query: 273 GAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP 332
L+FLRN QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F++++NEP
Sbjct: 275 ----LEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEP 330
Query: 333 VEGGEGNVLGQLASAMPQA---------VTVTPEEREAIE 363
V+ G G + A + VTP+E+EAIE
Sbjct: 331 VQEAGGQGGGGGGGSGGIAEAGGGHMNYIQVTPQEKEAIE 370
>gi|357138887|ref|XP_003571018.1| PREDICTED: putative DNA repair protein RAD23-1-like [Brachypodium
distachyon]
Length = 290
Score = 184 bits (467), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 109/207 (52%), Positives = 136/207 (65%), Gaps = 17/207 (8%)
Query: 151 PVSSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYL 210
P+++V V AS+L++GSNL+ + QI++MGGGSWDR+ V RALRAAYNNPERAV+YL
Sbjct: 97 PLNTVDHV----ASDLLSGSNLDTMINQIMEMGGGSWDRDKVQRALRAAYNNPERAVDYL 152
Query: 211 YSGIP--EQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNM 268
YSGIP + AVP V Q N T A P + PN PL LFPQ N
Sbjct: 153 YSGIPVTAEVAVPVVP------QGAN---STDATPPGVTGLSGIPNTAPLSLFPQWASNA 203
Query: 269 GSNAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRL 328
G AG G+LDFLRN+QQFQALR MV NPQILQPMLQELG+ +P L+RLIQE+ +F L
Sbjct: 204 GGAAGGGSLDFLRNNQQFQALREMVHTNPQILQPMLQELGRVDPQLLRLIQENSDEFFGL 263
Query: 329 INEPVEGGEGNVLGQ--LASAMPQAVT 353
NE + G+G Q L++ +P A+
Sbjct: 264 PNENFDAGDGLEFYQSVLSAPLPLALV 290
>gi|417400397|gb|JAA47148.1| Putative nucleotide excision repair factor nef2 rad23 component
[Desmodus rotundus]
Length = 408
Score = 183 bits (465), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 138/395 (34%), Positives = 203/395 (51%), Gaps = 57/395 (14%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V +KTL+ F+I++ P++ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPDETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSKV--------------SSSGASTVSAAPANQAQTTSSAPPTST 106
E K+ E +FVVVM+TK K +++ + S APA AQ + P +
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVTTPAPTTTQQSNPATTTTISSSTAPA-VAQVPTPTPALAP 119
Query: 107 QPTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSV-----SDVYGQ 161
PT S TPA T +S P SA PA PA P + S+ S+++
Sbjct: 120 TPTPASVTPASTTVSSESAPASATKQENPAEKPAETPVATSPTSTDSTSGDSSRSNLFED 179
Query: 162 AASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP----EQ 217
A S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP Q
Sbjct: 180 ATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQ 236
Query: 218 TAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTL 277
V P A+ G + A +SG G P L
Sbjct: 237 AVVDPPPAATTGAPQSSVAAAAATTTATTTTTSSG-----------GHP----------L 275
Query: 278 DFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPV---- 333
+FLRN QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F++++NEPV
Sbjct: 276 EFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAG 335
Query: 334 -----EGGEGNVLGQLASAMPQAVTVTPEEREAIE 363
GG + + S + VTP+E+EAIE
Sbjct: 336 GQGGGSGGGSGGIAEAGSGHMNYIQVTPQEKEAIE 370
>gi|348535033|ref|XP_003455006.1| PREDICTED: UV excision repair protein RAD23 homolog B-like
[Oreochromis niloticus]
Length = 373
Score = 183 bits (464), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 128/368 (34%), Positives = 207/368 (56%), Gaps = 38/368 (10%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + +KTL+ F+I++ E+ V +K+ IE +G +++ + Q LI+ GK+L D + L+
Sbjct: 1 MLITLKTLQQQTFKIDIDEEETVRTLKERIEQEKGKEIFSVAGQKLIYAGKILSDDSPLK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E K+ E +FVVVM+TK K + + + +AAPA +++AP + ++TS PA
Sbjct: 61 EYKIDEKNFVVVMVTKPKKAPTASQPSTAAPA----PSTTAPAAQSDSSSTSDKPA---- 112
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
QS + P + P+ A + + + +++ +A SNLV GS+ +A V +++
Sbjct: 113 -EQSSTDDKPEESQPSTTEASSTSVGRS----GDAANLISEAVSNLVTGSSYDAMVNEMM 167
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
MG ++RE V+ ALRA++NNP+RA+EYL +GIP + ++G A PPA
Sbjct: 168 LMG---YEREQVVAALRASFNNPDRAMEYLLTGIPSRN-----QGNASGRDAVAPPA--- 216
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQIL 300
+ PA PA + AN + P+ G G L FLRN QFQ +R ++Q N +L
Sbjct: 217 SGTPAVPAGNASAPAN-----TRSSPSAG---GGNPLSFLRNQPQFQVMRQLIQQNAALL 268
Query: 301 QPMLQELGKQNPHLMRLIQEHQTDFLRLINEPV-----EGGEGNVLGQLASAMPQAVTVT 355
+LQE+G++NP L++ I HQ F++++NEPV GG G + M + VT
Sbjct: 269 PALLQEIGRENPELLQEISSHQEQFIQMLNEPVPEPVPGGGSSGAGGGGGNQM-NYIQVT 327
Query: 356 PEEREAIE 363
P+E+EAIE
Sbjct: 328 PQEKEAIE 335
>gi|355715051|gb|AES05209.1| RAD23-like protein B [Mustela putorius furo]
Length = 406
Score = 182 bits (461), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 137/397 (34%), Positives = 203/397 (51%), Gaps = 62/397 (15%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M V +KTL+ F+I++ P++ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MLVTLKTLQQQTFKIDIDPDETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQ-------------------TTSSA 101
E K+ E +FVVVM+TK K V+ APA Q + A
Sbjct: 61 EYKIDEKNFVVVMVTKPKA-------VTPAPATTQQSSPATTTTVSSSTAPAVAQAPTPA 113
Query: 102 PPTSTQPTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPV------SSV 155
P + P+ S TPAPT A + P SA P PA PA P A +P SS
Sbjct: 114 PALAPTPSPASITPAPTTASSEPAPASATQPEKPAEKPAETPV-ATSPTATDSTSGDSSR 172
Query: 156 SDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 215
S+++ A S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP
Sbjct: 173 SNLFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIP 229
Query: 216 EQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAG 275
G+ +Q P A + + P++ ++ G
Sbjct: 230 -----------------GDRESQAVVDTPPAVSTGAPPSSVAAAAATTTASTTTASPGGH 272
Query: 276 TLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEG 335
L+FLRN QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F++++NEPV+
Sbjct: 273 PLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQE 332
Query: 336 GEGNVLGQLASAMPQA---------VTVTPEEREAIE 363
G G + + VTP+E+EAIE
Sbjct: 333 AGGQGGGGGGGSGGIGEAGSGHMNYIQVTPQEKEAIE 369
>gi|164665688|gb|ABY66298.1| RAD23-like protein [Brassica napus]
Length = 357
Score = 182 bits (461), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 131/347 (37%), Positives = 173/347 (49%), Gaps = 88/347 (25%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+FVK LKG FEI+V PED V DVKKNIETV G YPA++Q+LIH+GKVLKD TTL
Sbjct: 1 MKIFVKNLKGARFEIQVSPEDSVGDVKKNIETVMGVTAYPAAEQVLIHKGKVLKDETTLA 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
N V+E S V+ + K K +S+G ST APA+ +A P ST
Sbjct: 61 ANNVSEKS--VIGVIKKKPASTGTST---APASLTALVHAAHPYST-------------- 101
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
AA P PA AASN S E+ +QQIL
Sbjct: 102 ------------AAETPVTPTEPA---------------WDAASNGNYESISESNIQQIL 134
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
+M G+W RE V AL AY++ +A+EY+Y GIP ++ + + Q
Sbjct: 135 EMVRGAWSREAVAYALCLAYDDLNKALEYIYFGIPVKS-------------EDHYTTEEQ 181
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQIL 300
Q+PA DL +LD LR++ +F+ LR +VQ++P +L
Sbjct: 182 TQEPAEA-----------DL-------------EWSLDSLRHTPEFEHLRPLVQSDPSLL 217
Query: 301 QPMLQELGKQNPHLMRLIQEHQTDFLRLI----NEPVEGGE-GNVLG 342
L L KQNP RLIQ+++ DFLRL+ EP GG+ GN +G
Sbjct: 218 MDFLLMLKKQNPPFFRLIQDNKADFLRLLLEQPQEPNNGGDSGNQVG 264
>gi|387914414|gb|AFK10816.1| UV excision repair protein RAD23-like protein [Callorhinchus milii]
Length = 378
Score = 181 bits (460), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 134/376 (35%), Positives = 196/376 (52%), Gaps = 48/376 (12%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++ VKTL+ F I+++PE V +K+ IET +G D +P + Q LI+ GK+L D T +
Sbjct: 1 MRITVKTLQQQSFHIQIEPELPVKALKEKIETEKGKDAFPVAGQKLIYAGKILDDETPII 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPA---------NQAQTTSSAPPTSTQPTTT 111
E K+ E FVVVM+TK K SS + PA ++ PT+T T
Sbjct: 61 EYKIDEEKFVVVMITKPK-SSPSVQAAATQPATPSTPQPATTTPTVPPASSPTATTETVP 119
Query: 112 SQTPAPTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSN 171
+ T + +S + + +P+ + A SS+ DV A S LV G
Sbjct: 120 TNTSNELNTAEKPTEKSDETSTSTSTSPSASTIRTSGGAQGSSLFDV---ATSALVTGQQ 176
Query: 172 LEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGG- 230
E V +I MG + RE V+ AL+A++NNP+RAVEYL GIP + AR+S
Sbjct: 177 YETMVTEITSMG---YSREQVVAALKASFNNPDRAVEYLLMGIPGER-----ARSSVNNP 228
Query: 231 QAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALR 290
Q A T + QPAAPAPTS N L+FLRN QF +R
Sbjct: 229 QQTTGTACTGSAQPAAPAPTSRENP---------------------LEFLRNQPQFHQMR 267
Query: 291 TMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQ 350
++Q NP +L +L +LG++NPHL++ I +HQ +F++++NEP++ V + SA Q
Sbjct: 268 QILQQNPSLLPALLHQLGRENPHLLQQISQHQGNFIQMLNEPIQDIANEVA--VTSAGEQ 325
Query: 351 ---AVTVTPEEREAIE 363
+ VTP+E+EAIE
Sbjct: 326 QMDHLQVTPQEKEAIE 341
>gi|410903534|ref|XP_003965248.1| PREDICTED: UV excision repair protein RAD23 homolog B-like
[Takifugu rubripes]
Length = 384
Score = 180 bits (457), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 121/335 (36%), Positives = 177/335 (52%), Gaps = 35/335 (10%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + +KTL+ F+IE+ E+ V +K+ IE +G D +P S LI+ G +L DV L+
Sbjct: 1 MLITLKTLQQQTFKIEIDEEETVKTLKERIEAEKGKDNFPVSGLKLIYAGVILNDVKPLK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E +++ +FVVVM TK K + + AA ++APP +T S+ P
Sbjct: 61 EYNISDKNFVVVMATKPKTAPAATQPSPAASG----PCTAAPPAPGACSTVSEVPTQQTT 116
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
+ E P AAPA P + P A ++ +A SNLV G + E+ V +I+
Sbjct: 117 KEDNAEEKPPSTAAPASTPEGGGSEVPTNA------NLIDEAVSNLVTGPSYESMVNEIM 170
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
MG +DRE V+ ALRA++NNP+RAVEYL +GIP + GQA A+
Sbjct: 171 LMG---YDREQVVVALRASFNNPDRAVEYLLTGIPGRDQ----------GQAAGTTAEAT 217
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGT---LDFLRNSQQFQALRTMVQANP 297
+ A AP G A P G GS+ GA L FLRN QFQ +R ++Q N
Sbjct: 218 SAGVAPAAPLGGLRA------PTG---TGSSTGAERVNPLSFLRNQPQFQQMRQLIQQNA 268
Query: 298 QILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP 332
+L +LQE+G++NP L++ I HQ F++++NEP
Sbjct: 269 SLLPALLQEIGRENPELLQEISRHQEQFIQMLNEP 303
>gi|126335852|ref|XP_001374067.1| PREDICTED: UV excision repair protein RAD23 homolog B [Monodelphis
domestica]
Length = 411
Score = 180 bits (457), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 136/395 (34%), Positives = 211/395 (53%), Gaps = 54/395 (13%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++ +KTL+ F+I++ PE+ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQITLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E K+ E +FVVVM+TK K +++ A + + + TTS+ ++ + TP+P +A
Sbjct: 61 EYKIDEKNFVVVMVTKPKAAATSAPSPATTQQSIPATTSTVSSSTAASVAQAPTPSPALA 120
Query: 121 PPQS---------------VPESAPPPAAPAPAPAPAP---APAPAPAPV--SSVSDVYG 160
P + +P SAP PA P AP +P + + + SS S+++
Sbjct: 121 PTPTPTSVTPTPAAAVCEPIPTSAPKEEKPAEKPVEAPIGVSPTSSDSTLGDSSRSNLFE 180
Query: 161 QAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP----E 216
A S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP
Sbjct: 181 DATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDREN 237
Query: 217 QTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGT 276
Q+ V P AS G + A A A T+ +P
Sbjct: 238 QSVVDPPQAASTGAAQSSAVAAAAATTTATTTTTTTSGGHP------------------- 278
Query: 277 LDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPV--- 333
L+FLRN QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F++++NEPV
Sbjct: 279 LEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQES 338
Query: 334 -----EGGEGNVLGQLASAMPQAVTVTPEEREAIE 363
GG + + S + VTP+E+EAIE
Sbjct: 339 GGQGGGGGGSGGIAEAGSGHMNYIQVTPQEKEAIE 373
>gi|224091533|ref|XP_002188381.1| PREDICTED: UV excision repair protein RAD23 homolog B [Taeniopygia
guttata]
Length = 400
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 131/390 (33%), Positives = 197/390 (50%), Gaps = 55/390 (14%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++ +KTL+ F I++ PE+ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQITLKTLQQQTFRIDIDPEETVKALKEKIESERGKDAFPVAGQKLIYAGKILNDETALK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E K+ E +FVVVM+TK K +++G + P+N T S T PAP A
Sbjct: 61 EYKIDEKNFVVVMVTKPK-AAAGVT----QPSNATSTVGSTTAAPTAVAAPIPVPAPVPA 115
Query: 121 PPQSVPESAPPPAAPAPAPAP----------------APAPAPAPAPVSSVSDVYGQAAS 164
P P PAP P +P+ + +S S+++ A S
Sbjct: 116 PVPPPPAPDAVACEPAPVSTPKEEKPEEKPPEAPAAVSPSSIDSTTGDTSRSNLFEDAIS 175
Query: 165 NLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVA 224
LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP
Sbjct: 176 ALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIP--------- 223
Query: 225 RASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQ 284
QA P Q P T ++ + +P S+ G L+FLRN
Sbjct: 224 ---GDNQAVADPPQ--------PPSTGASQSSAVAAAVATIPTTTSSLGGHPLEFLRNQP 272
Query: 285 QFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPV----------- 333
QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F+ ++NEPV
Sbjct: 273 QFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIHMLNEPVLESRQGLSGSD 332
Query: 334 EGGEGNVLGQLASAMPQAVTVTPEEREAIE 363
+G +G +A + VTP+E+EAIE
Sbjct: 333 DGASTGGIGDAGNAHMNYIQVTPQEKEAIE 362
>gi|354499742|ref|XP_003511965.1| PREDICTED: UV excision repair protein RAD23 homolog B-like
[Cricetulus griseus]
Length = 497
Score = 179 bits (455), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 136/382 (35%), Positives = 199/382 (52%), Gaps = 63/382 (16%)
Query: 22 KVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSS 81
+V +K+ IE+ +G D +P + Q LI+ GK+L D T L+E K+ E +FVVVM+TK K +
Sbjct: 101 QVKALKEKIESEKGKDAFPVAGQKLIYAGKILSDDTALKEYKIDEKNFVVVMVTKPKAVT 160
Query: 82 S---GASTVSAAPANQAQTTSSA--------PPTSTQPTTT--SQTPAPTVAPPQSVPES 128
+ + S PA A ++S+A P ++ PT+T S TPA T + P S
Sbjct: 161 TPVPATTQQSNTPATTAVSSSTATVVAQAPTPTPASAPTSTPASTTPASTTVSSEPAPAS 220
Query: 129 APPPAAPAPAPAPAP---APAPAPAP--VSSVSDVYGQAASNLVAGSNLEATVQQILDMG 183
A P PA PA +P +PAPA + SS S+++ A S LV G + E V +I+ MG
Sbjct: 221 AAQPEKPAEKPAQSPVVTSPAPADSTPGDSSRSNLFEDATSALVTGQSYENMVTEIMSMG 280
Query: 184 GGSWDRETVIRALRAAYNNPERAVEYLYSGIP----EQTAVPPVARASAGGQAGNPPAQT 239
++RE VI ALRA++NNP+RAVEYL GIP Q V P PP
Sbjct: 281 ---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAVVDP------------PPQAV 325
Query: 240 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQI 299
P +PA + S+AG L+FLRN QFQ +R ++Q NP +
Sbjct: 326 STGTPQSPAVAAAAATTTA--------TTTSSAGGHPLEFLRNQPQFQQMRQIIQQNPSL 377
Query: 300 LQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG------------------EGNVL 341
L +LQ++G++NP L++ I +HQ F++++NEPV+ G +
Sbjct: 378 LPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQGGGGGGGGGGGGGGSGGGGI 437
Query: 342 GQLASAMPQAVTVTPEEREAIE 363
+ S + VTP+E+EAIE
Sbjct: 438 AEAGSGHMNYIQVTPQEKEAIE 459
>gi|356551713|ref|XP_003544218.1| PREDICTED: LOW QUALITY PROTEIN: putative DNA repair protein
RAD23-1-like [Glycine max]
Length = 254
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 102/213 (47%), Positives = 126/213 (59%), Gaps = 25/213 (11%)
Query: 152 VSSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLY 211
V+ ++ YG ASN V GSNLE T+QQI+DMGGGSWDR+TV ALRAA NNPE V+YLY
Sbjct: 62 VNVTTNTYGLTASNXVVGSNLEKTIQQIMDMGGGSWDRDTVSHALRAAXNNPEHVVDYLY 121
Query: 212 SGIPEQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSG-PNANPLDLFPQGLPNMGS 270
SGIPE + S G P QT A G N++PL++FP+ + G
Sbjct: 122 SGIPEVVEI----FMSIGPY---PINQTTKIGGATARAVFGVHNSSPLNMFPKEII-CGV 173
Query: 271 NAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLIN 330
AG G LDF RN+ LQP+L ELGKQN L+RLI EH +FL L N
Sbjct: 174 GAGIGLLDFHRNN----------------LQPVLXELGKQNLSLLRLISEHHVEFLXLTN 217
Query: 331 EPVEGGEGNVLGQLASAMPQAVTVTPEEREAIE 363
EPVEG EG++ Q MP ++ VTP E+ AI+
Sbjct: 218 EPVEGSEGDIFDQPEQDMPHSINVTPAEQHAIK 250
>gi|427787569|gb|JAA59236.1| Putative nucleotide excision repair factor nef2 rad23 component
[Rhipicephalus pulchellus]
Length = 397
Score = 178 bits (452), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 131/341 (38%), Positives = 183/341 (53%), Gaps = 29/341 (8%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M V +KTL+ F+IEV P + V K+ IE +G D YPA Q LI+ GK+L D + +
Sbjct: 1 MIVTLKTLQQQTFKIEVDPSETVKVFKERIEEKKGKD-YPAHCQKLIYAGKILSDDSKMS 59
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPT---STQPTTTSQTPAP 117
E ++ E FVV+M+TK K S A+ V+ P + S+ P+ TQP +Q PA
Sbjct: 60 EYEIDEKKFVVIMVTKPK-QSVDATAVTPGPGATSTVASAGTPSPAAGTQPAAEAQKPAE 118
Query: 118 TVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQ 177
T P +S PA +PA + A P P ++ + AAS LV G E VQ
Sbjct: 119 T---PSGTSKS------PAQSPAHSAATTPTSRPAAAETAGLAMAASALVMGDEYERMVQ 169
Query: 178 QILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNP-- 235
QI++MG ++R V RALRA++NNP+RAVEYL +GIP P A S G +
Sbjct: 170 QIMEMG---YERPQVERALRASFNNPDRAVEYLLTGIPPSQQDP--AEESHGATEESEEA 224
Query: 236 ----PAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRT 291
P+ T P + T+G PL+ L G N L FLR QFQ +R
Sbjct: 225 PRSVPSDTAMSSPQSQHGTTGGGGGPLEA---ALAAEGGNP-EDPLAFLRFQPQFQQMRQ 280
Query: 292 MVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP 332
++Q NPQ+L +LQ+LG+ NP L++LI +Q F+R++NEP
Sbjct: 281 VIQQNPQLLNAVLQQLGQTNPQLLQLISRNQEAFVRMLNEP 321
>gi|397479272|ref|XP_003810949.1| PREDICTED: UV excision repair protein RAD23 homolog B-like isoform
3 [Pan paniscus]
Length = 403
Score = 178 bits (451), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 143/395 (36%), Positives = 201/395 (50%), Gaps = 62/395 (15%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + K + G+ EVK +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MSLKKKKVSGSVCRREVKA------LKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 54
Query: 61 ENKVAENSFVVVMLTKSKVSSSGA--STVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPT 118
E K+ E +FVVVM+TK K S+ A +T +APA+ TSS T Q T APT
Sbjct: 55 EYKIDEKNFVVVMVTKPKAVSTPAPATTQQSAPASTTAVTSSTTTTVAQAPTPVPALAPT 114
Query: 119 VAPPQSVPESAPPPAAPAPAPA---PAPAPAPAPAPV-------------SSVSDVYGQA 162
P P SA + PAPA A PA PA PV SS S+++ A
Sbjct: 115 STPASITPASATASSEPAPASAAKQEKPAEKPAETPVATSPTATDSTSGDSSRSNLFEDA 174
Query: 163 ASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP---EQTA 219
S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP E A
Sbjct: 175 TSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQA 231
Query: 220 V--PPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTL 277
V PP A ++ Q+ A +SG G P L
Sbjct: 232 VVDPPQAASTGAPQSSAVAAAAATTTATTTTTSSG-----------GHP----------L 270
Query: 278 DFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG- 336
+FLRN QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F++++NEPV+
Sbjct: 271 EFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAG 330
Query: 337 --------EGNVLGQLASAMPQAVTVTPEEREAIE 363
+ + S + VTP+E+EAIE
Sbjct: 331 GQGGGGGGGSGGIAEAGSGHMNYIQVTPQEKEAIE 365
>gi|194033860|ref|XP_001927901.1| PREDICTED: UV excision repair protein RAD23 homolog B [Sus scrofa]
Length = 408
Score = 177 bits (449), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 138/394 (35%), Positives = 202/394 (51%), Gaps = 55/394 (13%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++ +KTL+ F+I++ PE+ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQITLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGA-------------STVSAAPANQAQTTSSAPPTSTQ 107
E K+ E +FVVVM+TK K ++ A + S+ AQ + AP +
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVTTPAPATTQQSNSATTTTVSSSTAPAAAQAPTPAPALAPT 120
Query: 108 PTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSV-----SDVYGQA 162
PT S TPA T A + P SA PA PA P + S+ S+++ A
Sbjct: 121 PTPASITPASTTASSEPAPASATKQEKPAEKPAETPVATSPTSTDSTSGDSSRSNLFEDA 180
Query: 163 ASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP----EQT 218
S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP Q
Sbjct: 181 TSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQA 237
Query: 219 AVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLD 278
V P AS G + A +SG G P L+
Sbjct: 238 VVDPPPAASTGAPQSSVAAAAATTTATTTTTSSG-----------GHP----------LE 276
Query: 279 FLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPV----- 333
FLRN QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F++++NEPV
Sbjct: 277 FLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGS 336
Query: 334 ----EGGEGNVLGQLASAMPQAVTVTPEEREAIE 363
GG + + S + VTP+E+EAIE
Sbjct: 337 QGGGGGGGSGGIAEAGSGHMNYIQVTPQEKEAIE 370
>gi|221045766|dbj|BAH14560.1| unnamed protein product [Homo sapiens]
Length = 388
Score = 177 bits (448), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 138/373 (36%), Positives = 193/373 (51%), Gaps = 56/373 (15%)
Query: 23 VSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSSS 82
V +K+ IE+ +G D +P + Q LI+ GK+L D T L+E K+ E +FVVVM+TK K S+
Sbjct: 2 VKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPKAVST 61
Query: 83 GA--STVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPA 140
A +T +APA+ TSS T Q T APT P P SA + PAPA A
Sbjct: 62 PAPATTQQSAPASTTAVTSSTTTTVAQAPTPVPALAPTSTPASITPASATASSEPAPASA 121
Query: 141 ---PAPAPAPAPAPV-------------SSVSDVYGQAASNLVAGSNLEATVQQILDMGG 184
PA PA PV SS S+++ A S LV G + E V +I+ MG
Sbjct: 122 AKQEKPAEKPAETPVATSPTATDSTSGDSSRSNLFEDATSALVTGQSYENMVTEIMSMG- 180
Query: 185 GSWDRETVIRALRAAYNNPERAVEYLYSGIP---EQTAV--PPVARASAGGQAGNPPAQT 239
++RE VI ALRA++NNP+RAVEYL GIP E AV PP A ++ Q+ A
Sbjct: 181 --YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAVVDPPQAASTGAPQSSAVAAAA 238
Query: 240 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQI 299
+SG G P L+FLRN QFQ +R ++Q NP +
Sbjct: 239 ATTTATTTTTSSG-----------GHP----------LEFLRNQPQFQQMRQIIQQNPSL 277
Query: 300 LQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG---------EGNVLGQLASAMPQ 350
L +LQ++G++NP L++ I +HQ F++++NEPV+ + + S
Sbjct: 278 LPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQGGGGGGGSGGIAEAGSGHMN 337
Query: 351 AVTVTPEEREAIE 363
+ VTP+E+EAIE
Sbjct: 338 YIQVTPQEKEAIE 350
>gi|347800662|ref|NP_001231642.1| UV excision repair protein RAD23 homolog B isoform 2 [Homo sapiens]
gi|397479270|ref|XP_003810948.1| PREDICTED: UV excision repair protein RAD23 homolog B-like isoform
2 [Pan paniscus]
gi|426362615|ref|XP_004048453.1| PREDICTED: UV excision repair protein RAD23 homolog B-like isoform
2 [Gorilla gorilla gorilla]
gi|221042046|dbj|BAH12700.1| unnamed protein product [Homo sapiens]
Length = 388
Score = 177 bits (448), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 138/373 (36%), Positives = 193/373 (51%), Gaps = 56/373 (15%)
Query: 23 VSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSSS 82
V +K+ IE+ +G D +P + Q LI+ GK+L D T L+E K+ E +FVVVM+TK K S+
Sbjct: 2 VKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPKAVST 61
Query: 83 GA--STVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPA 140
A +T +APA+ TSS T Q T APT P P SA + PAPA A
Sbjct: 62 PAPATTQQSAPASTTAVTSSTTTTVAQAPTPVPALAPTSTPASITPASATASSEPAPASA 121
Query: 141 ---PAPAPAPAPAPV-------------SSVSDVYGQAASNLVAGSNLEATVQQILDMGG 184
PA PA PV SS S+++ A S LV G + E V +I+ MG
Sbjct: 122 AKQEKPAEKPAETPVATSPTATDSTSGDSSRSNLFEDATSALVTGQSYENMVTEIMSMG- 180
Query: 185 GSWDRETVIRALRAAYNNPERAVEYLYSGIP---EQTAV--PPVARASAGGQAGNPPAQT 239
++RE VI ALRA++NNP+RAVEYL GIP E AV PP A ++ Q+ A
Sbjct: 181 --YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAVVDPPQAASTGAPQSSAVAAAA 238
Query: 240 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQI 299
+SG G P L+FLRN QFQ +R ++Q NP +
Sbjct: 239 ATTTATTTTTSSG-----------GHP----------LEFLRNQPQFQQMRQIIQQNPSL 277
Query: 300 LQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG---------EGNVLGQLASAMPQ 350
L +LQ++G++NP L++ I +HQ F++++NEPV+ + + S
Sbjct: 278 LPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQGGGGGGGSGGIAEAGSGHMN 337
Query: 351 AVTVTPEEREAIE 363
+ VTP+E+EAIE
Sbjct: 338 YIQVTPQEKEAIE 350
>gi|74195673|dbj|BAE39643.1| unnamed protein product [Mus musculus]
Length = 327
Score = 177 bits (448), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 126/357 (35%), Positives = 181/357 (50%), Gaps = 59/357 (16%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V +KTL+ F+I++ PE+ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILSDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQP------------ 108
E K+ E +FVVVM+TK K + +A PA Q +S+ PT+
Sbjct: 61 EYKIDEKNFVVVMVTKPK------AVTTAVPAT-TQPSSTPSPTAVSSSPAVAAAQAPAP 113
Query: 109 --------TTTSQTPAPTVAPPQSVPESAPPPAAPAPAPA-----PAPAPAPAPAPVSSV 155
T S PA T A + P A P PA PA +PAPA + SS
Sbjct: 114 TPALPPTSTPASTAPASTTASSEPAPAGATQPEKPAEKPAQTPVLTSPAPADSTPGDSSR 173
Query: 156 SDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 215
S+++ A S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP
Sbjct: 174 SNLFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIP 230
Query: 216 ----EQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSN 271
Q V P PP P +PA + +
Sbjct: 231 GDRESQAVVDP------------PPQAVSTGTPQSPAVAAAAATT--------TATTTTT 270
Query: 272 AGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRL 328
+G L+FLRN QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F R
Sbjct: 271 SGGHPLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFFRC 327
>gi|148226348|ref|NP_001082494.1| RAD23 homolog B [Xenopus laevis]
gi|28277263|gb|AAH44089.1| MGC53561 protein [Xenopus laevis]
gi|28278600|gb|AAH44115.1| MGC53561 protein [Xenopus laevis]
Length = 412
Score = 177 bits (448), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 129/406 (31%), Positives = 196/406 (48%), Gaps = 75/406 (18%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++ +KTL+ F+I++ E+ V +K+ IE +G+D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQITLKTLQQQTFKIDIDAEETVKALKEKIELEKGNDAFPVAGQKLIYAGKILNDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSK--------------------------------VSSSGASTVS 88
E K+ E +FVVVM+TK K ++ A
Sbjct: 61 EYKIDEKNFVVVMVTKPKGAACPSAPSPAVSQPVSAAAPAPASPPLTYTPIARQNAPIPL 120
Query: 89 AAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQSVPE--SAPPPAAPAPAPAPAPAPA 146
P ++ A PTS TTT AP + PE + PP +P+ P
Sbjct: 121 PVPLPLPTVSAPAAPTSELSTTT--------APKEEKPEEKTVSPPETESPSSTECSLPT 172
Query: 147 PAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERA 206
+ P ++ A S LV G + E V +I+ MG ++RE VI ALRA++NNP+RA
Sbjct: 173 DSSRP-----SLFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRA 224
Query: 207 VEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLP 266
VEYL GIP + + GQA P + + P P P + A
Sbjct: 225 VEYLLMGIP----------SDSEGQAVAEPPEALSSTPTEPLPVAAGAAA------TTTV 268
Query: 267 NMGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFL 326
+ G LDFL+N QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F+
Sbjct: 269 PSTPSTGGNPLDFLQNQPQFQQMRQIIQQNPSLLPALLQQIGRENPSLLQQISQHQEQFI 328
Query: 327 RLINEPV---------EGGEGNVLGQLASAMPQAVTVTPEEREAIE 363
+++N+PV GG V + S + VTP+E+EAIE
Sbjct: 329 QMLNDPVPESGGQGGGGGGGRGVAAEAGSGQMNYIQVTPQEKEAIE 374
>gi|347658978|ref|NP_001231638.1| UV excision repair protein RAD23 homolog B [Pan troglodytes]
gi|343961243|dbj|BAK62211.1| UV excision repair protein RAD23 homolog B [Pan troglodytes]
Length = 388
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 136/373 (36%), Positives = 191/373 (51%), Gaps = 56/373 (15%)
Query: 23 VSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSSS 82
V +K+ IE+ +G D +P + Q LI+ GK+L D T L+E K+ E +FVVVM+TK K S+
Sbjct: 2 VKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPKAVST 61
Query: 83 GA--STVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPA 140
A +T +APA+ T S T Q APT P P SA + PAPA A
Sbjct: 62 PAPATTQQSAPASTTAVTCSTTTTVAQAPIPVPALAPTSTPASITPASATASSEPAPASA 121
Query: 141 ---PAPAPAPAPAPV-------------SSVSDVYGQAASNLVAGSNLEATVQQILDMGG 184
PA PA PV SS S+++ A S LV G + E V +I+ MG
Sbjct: 122 AKQEKPAEKPAETPVATSPTATDSTSGDSSRSNLFEDATSALVTGQSYENMVTEIMSMG- 180
Query: 185 GSWDRETVIRALRAAYNNPERAVEYLYSGIP---EQTAV--PPVARASAGGQAGNPPAQT 239
++RE VI ALRA++NNP+RAVEYL GIP E AV PP A ++ Q+ A
Sbjct: 181 --YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAVVDPPQAASTGAPQSSAVAAAA 238
Query: 240 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQI 299
+SG G P L+FLRN QFQ +R ++Q NP +
Sbjct: 239 ATTTATTTTTSSG-----------GHP----------LEFLRNQPQFQQMRQIIQQNPSL 277
Query: 300 LQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG---------EGNVLGQLASAMPQ 350
L +LQ++G++NP L++ I +HQ F++++NEPV+ + + S
Sbjct: 278 LPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQGGGGGGGSGGIAEAGSGHMN 337
Query: 351 AVTVTPEEREAIE 363
+ VTP+E+EAIE
Sbjct: 338 YIQVTPQEKEAIE 350
>gi|355753132|gb|EHH57178.1| UV excision repair protein RAD23-like protein B, partial [Macaca
fascicularis]
Length = 387
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 138/373 (36%), Positives = 193/373 (51%), Gaps = 56/373 (15%)
Query: 23 VSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSSS 82
V +K+ IE+ +G D +P + Q LI+ GK+L D T L+E K+ E +FVVVM+TK K S+
Sbjct: 1 VKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPKAVST 60
Query: 83 GA--STVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPA 140
A +T +APA+ TSS T Q T APT P P SA + PAPA A
Sbjct: 61 PAPATTQQSAPASTTAITSSTATTVAQAPTPVPALAPTSTPASITPASATASSEPAPASA 120
Query: 141 ---PAPAPAPAPAPV-------------SSVSDVYGQAASNLVAGSNLEATVQQILDMGG 184
PA PA PV SS S+++ A S LV G + E V +I+ MG
Sbjct: 121 TKQEKPAEKPAETPVATSPTATDSTSGDSSRSNLFEDATSALVTGQSYENMVTEIMSMG- 179
Query: 185 GSWDRETVIRALRAAYNNPERAVEYLYSGIP---EQTAV--PPVARASAGGQAGNPPAQT 239
++RE VI ALRA++NNP+RAVEYL GIP E AV PP A ++ Q+ A
Sbjct: 180 --YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAVVDPPQAASTGAPQSSAVAAAA 237
Query: 240 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQI 299
+SG G P L+FLRN QFQ +R ++Q NP +
Sbjct: 238 ATTTATTTTTSSG-----------GHP----------LEFLRNQPQFQQMRQIIQQNPSL 276
Query: 300 LQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG---------EGNVLGQLASAMPQ 350
L +LQ++G++NP L++ I +HQ F++++NEPV+ + + S
Sbjct: 277 LPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQGGGGGGGSGGIAEAGSGHMN 336
Query: 351 AVTVTPEEREAIE 363
+ VTP+E+EAIE
Sbjct: 337 YIQVTPQEKEAIE 349
>gi|281345182|gb|EFB20766.1| hypothetical protein PANDA_004561 [Ailuropoda melanoleuca]
Length = 386
Score = 176 bits (446), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 129/369 (34%), Positives = 189/369 (51%), Gaps = 49/369 (13%)
Query: 23 VSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSSS 82
V +K+ IE+ +G D +P + Q LI+ GK+L D T L+E K+ E +FVVVM+TK K ++
Sbjct: 1 VKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPKAVTT 60
Query: 83 GA--STVSAAPANQAQTTSSAPPTSTQPTTT-----------SQTPAPTVAPPQSVPESA 129
A +T + PA +SS P Q S TPAPT A + P SA
Sbjct: 61 PAPATTQQSNPATTTTVSSSTAPAVAQAPAPAPTLAPTPSPASVTPAPTTASSEPAPASA 120
Query: 130 PPPAAPAPAPAPAPAPAPAPAPV------SSVSDVYGQAASNLVAGSNLEATVQQILDMG 183
P PA PA P A +P SS S+++ A S LV G + E V +I+ MG
Sbjct: 121 TQPEKPAEKPAETPV-ATSPTATDSTSGDSSRSNLFEDATSALVTGQSYENMVTEIMSMG 179
Query: 184 GGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQQ 243
++RE VI ALRA++NNP+RAVEYL GIP G+ +Q
Sbjct: 180 ---YEREQVIAALRASFNNPDRAVEYLLMGIP-----------------GDRDSQAVVDT 219
Query: 244 PAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQPM 303
P A + + P++ +N G L+FLRN QFQ +R ++Q NP +L +
Sbjct: 220 PPAVSTGAPPSSVAAAAATTTASTTTANPGGHPLEFLRNQPQFQQMRQIIQQNPSLLPAL 279
Query: 304 LQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG---------EGNVLGQLASAMPQAVTV 354
LQ++G++NP L++ I +HQ F++++NEPV+ + + S + V
Sbjct: 280 LQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQGGGGGGGSGGIAEAGSGHMNYIQV 339
Query: 355 TPEEREAIE 363
TP+E+EAIE
Sbjct: 340 TPQEKEAIE 348
>gi|431918433|gb|ELK17657.1| UV excision repair protein RAD23 like protein B [Pteropus alecto]
Length = 439
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 139/426 (32%), Positives = 202/426 (47%), Gaps = 88/426 (20%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDK-------------------------------VSDVKKN 29
M+V +KTL+ F+I++ PE+ V +K+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETHVQQKFSTLSEAPTLCPAPLFGLGTPTNSIIVKALKEK 60
Query: 30 IETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSSSGASTVS- 88
IE+ +G D +P + Q LI+ GK+L D T L+E K+ E +FVVVM+TK K ++ A +
Sbjct: 61 IESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPKAVTTPAPATTQ 120
Query: 89 -------------AAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQSVPESAPPPAAP 135
APA AQT + P + PT S TPA T A + P SA P
Sbjct: 121 QSNSATTTTVSSSTAPAV-AQTPTPTPALAPTPTPASITPASTTASSEPAPASATKQENP 179
Query: 136 APAPAPAPAPAPAPAPVSSV-----SDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRE 190
A PA P + S+ S+++ A S LV G + E V +I+ MG ++RE
Sbjct: 180 AEKPAETPVATSPTSTDSTSGDSSRSNLFEDATSALVTGQSYENMVTEIMSMG---YERE 236
Query: 191 TVIRALRAAYNNPERAVEYLYSGIP----EQTAVPPVARASAGGQAGNPPAQTQAQQPAA 246
VI ALRA++NNP+RAVEYL GIP Q V P AS G + A
Sbjct: 237 QVIAALRASFNNPDRAVEYLLMGIPGDRESQAVVDPPPAASTGAPQSSVAAAAATTTATT 296
Query: 247 PAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQE 306
+SG G P L+FLRN QFQ +R ++Q NP +L +LQ+
Sbjct: 297 TTTSSG-----------GHP----------LEFLRNQPQFQQMRQIIQQNPSLLPALLQQ 335
Query: 307 LGKQNPHLMRLIQEHQTDFLRLINEPVEGG---------EGNVLGQLASAMPQAVTVTPE 357
+G++NP L++ I +HQ F++++NEPV+ + + S + VTP+
Sbjct: 336 IGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQGGGGGGGSGGIAEAGSGHMNYIQVTPQ 395
Query: 358 EREAIE 363
E+EAIE
Sbjct: 396 EKEAIE 401
>gi|332222431|ref|XP_003260373.1| PREDICTED: UV excision repair protein RAD23 homolog B isoform 2
[Nomascus leucogenys]
Length = 388
Score = 175 bits (444), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 137/373 (36%), Positives = 192/373 (51%), Gaps = 56/373 (15%)
Query: 23 VSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSSS 82
V +K+ IE+ +G D +P + Q LI+ GK+L D T L+E K+ E +FVVVM+TK K S+
Sbjct: 2 VKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPKAVST 61
Query: 83 GA--STVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPA 140
A +T +APA+ TSS T Q T APT P P S + PAPA A
Sbjct: 62 PAPATTQQSAPASTTAVTSSTATTVAQAPTPVPALAPTSTPASITPASVTASSEPAPASA 121
Query: 141 ---PAPAPAPAPAPV-------------SSVSDVYGQAASNLVAGSNLEATVQQILDMGG 184
PA PA PV SS S+++ A S LV G + E V +I+ MG
Sbjct: 122 TKQEKPAEKPAETPVATSPTATDSTSGDSSRSNLFEDATSALVTGQSYENMVTEIMSMG- 180
Query: 185 GSWDRETVIRALRAAYNNPERAVEYLYSGIP---EQTAV--PPVARASAGGQAGNPPAQT 239
++RE VI ALRA++NNP+RAVEYL GIP E AV PP A ++ Q+ A
Sbjct: 181 --YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAVVDPPQAASTGAPQSSAVAAAA 238
Query: 240 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQI 299
+SG G P L+FLRN QFQ +R ++Q NP +
Sbjct: 239 ATTTATTTTTSSG-----------GHP----------LEFLRNQPQFQQMRQIIQQNPSL 277
Query: 300 LQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG---------EGNVLGQLASAMPQ 350
L +LQ++G++NP L++ I +HQ F++++NEPV+ + + S
Sbjct: 278 LPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQGGGGGGGSGGIAEAGSGHMN 337
Query: 351 AVTVTPEEREAIE 363
+ VTP+E+EAIE
Sbjct: 338 YIQVTPQEKEAIE 350
>gi|428161911|gb|EKX31145.1| Rad23 nucleotide excision repair protein binds to XPC [Guillardia
theta CCMP2712]
Length = 378
Score = 174 bits (442), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 127/361 (35%), Positives = 187/361 (51%), Gaps = 87/361 (24%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV VKT+ G E+E +P + ++D+K IE S P ++ +IH G+VL+D +
Sbjct: 1 MKVIVKTMAGLQTEMEFEPTNTLADLKTKIEGQMSSLGGPVNK--IIHMGRVLEDGKPIS 58
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSS-APPTSTQPTTTSQTPAPTV 119
E VA+ + V+M++K K PA + Q +S AP + +P+T + P
Sbjct: 59 EYGVADGNTFVIMVSKKK------------PAQEPQPSSEPAPSAAPKPSTPATEAPPAA 106
Query: 120 APPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQI 179
Q + PAP PA + AP+ AP S+ S Y +AS L+ G +LEATV QI
Sbjct: 107 PAVQP--------SQPAPPSTPAQS-APSTAPASTTS--YDASASALLTGESLEATVMQI 155
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE----------------------- 216
++MG ++RE V++ALRAA+NNP+RAVEYL +GIPE
Sbjct: 156 MEMG---FEREQVMKALRAAFNNPDRAVEYLMTGIPEGADTAAPPQGGGQGGGQGAGGSG 212
Query: 217 ---QTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAG 273
++ P +S Q+Q QQ + T GP
Sbjct: 213 SGGGVSIDPEVLSSL---------QSQMQQHSESGGTGGP-------------------- 243
Query: 274 AGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPV 333
LDFLR+ QF LR ++QA PQ LQP+L+++G+Q+P ++R IQE+Q +F+RLINEPV
Sbjct: 244 ---LDFLRSDPQFAMLRGIIQARPQFLQPLLEQIGQQHPEVLRAIQENQDEFVRLINEPV 300
Query: 334 E 334
+
Sbjct: 301 D 301
>gi|351710326|gb|EHB13245.1| UV excision repair protein RAD23-like protein B [Heterocephalus
glaber]
Length = 406
Score = 174 bits (442), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 142/399 (35%), Positives = 204/399 (51%), Gaps = 67/399 (16%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V +KTL+ F+I+V D V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQVTLKTLQQQIFKIDV---DLVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGA--------------------STVSAAPANQAQTTSS 100
E K+ E +FVVVM+TK K ++ A + V+ AP +
Sbjct: 58 EYKIDEKNFVVVMVTKPKAVTTPAPATTQQSSPASTTTVSSSSATAVAQAPTPAPALAPT 117
Query: 101 APPTSTQP--TTTSQTPAPTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDV 158
+ P S P TT S PAP A Q P P A P A +PA + SS S++
Sbjct: 118 SAPASIAPAVTTVSSEPAPASAAQQEKPSEKP---AETPV-ASSPASTDNTSGDSSRSNL 173
Query: 159 YGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP--- 215
+ A S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP
Sbjct: 174 FEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDR 230
Query: 216 EQTAV--PPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAG 273
E AV PP A ++ Q+ A A +SG G P
Sbjct: 231 ESQAVVDPPQAASTGAPQSSAVAAAAATTTAATTTTSSG-----------GHP------- 272
Query: 274 AGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPV 333
L+FLRN QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F++++NEPV
Sbjct: 273 ---LEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPV 329
Query: 334 ---------EGGEGNVLGQLASAMPQAVTVTPEEREAIE 363
GG + + S + VTP+E+EAIE
Sbjct: 330 QEAGSQGGGGGGGSGGIAEAGSGHMNYIQVTPQEKEAIE 368
>gi|410901673|ref|XP_003964320.1| PREDICTED: UV excision repair protein RAD23 homolog A-like
[Takifugu rubripes]
Length = 367
Score = 174 bits (442), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 127/363 (34%), Positives = 188/363 (51%), Gaps = 34/363 (9%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++ +KTL+ +IE+ PE V +K+ IE +G D +P S Q LI+ GK+L+D T ++
Sbjct: 1 MQITLKTLQQQTIQIEIDPEQTVKALKEKIEAERGKDNFPVSCQKLIYAGKILQDDTPIK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ K+ E +FVVVM++K+K S++ S P Q + S + T + P+ A
Sbjct: 61 DYKIDEKNFVVVMVSKAKPSTAATPPASEPPKPPLQDSGSTSTAAPAATVPATASTPSSA 120
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P + + P P+ A PA S S A+S LV G+ EA + +I+
Sbjct: 121 PTATPAAAPVPSEEAKEEPSAAITEPQQPASSSDGSQGLD-ASSALVTGAEYEAMLTEII 179
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
MG ++RE V+ ALRA++NNP RAVEYL +GIP S+ Q NPP Q
Sbjct: 180 SMG---YERERVVAALRASFNNPHRAVEYLLTGIP-----------SSPVQESNPPVQA- 224
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQIL 300
AP PT P + P G L FLRN QF +R +Q NP +L
Sbjct: 225 ----PAPLPTESPASPP--------------EGENPLAFLRNQPQFLHMRQAIQQNPNLL 266
Query: 301 QPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEERE 360
+LQ+LG++NP L++ I +HQ F++++NEPV G + + VTP+E+E
Sbjct: 267 SALLQQLGQENPQLLQQINQHQERFIQMLNEPVGEGGEMGAAGDEGSSVNYIQVTPQEKE 326
Query: 361 AIE 363
AIE
Sbjct: 327 AIE 329
>gi|345777678|ref|XP_003431632.1| PREDICTED: UV excision repair protein RAD23 homolog B isoform 1
[Canis lupus familiaris]
Length = 385
Score = 174 bits (440), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 126/370 (34%), Positives = 188/370 (50%), Gaps = 53/370 (14%)
Query: 23 VSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSSS 82
V +K+ IE+ +G D +P + Q LI+ GK+L D T L+E K+ E +FVVVM+TK K
Sbjct: 2 VKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPK---- 57
Query: 83 GASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPAPA 142
+T + A Q+ ++ +S+ T Q PAP V P P S P A + PAP
Sbjct: 58 AVTTPAPATTQQSNPATTTTVSSSTAPTVVQAPAPPVLAPTPSPASVTPAPATSSEPAPT 117
Query: 143 -------PAPAPAPAPV-------------SSVSDVYGQAASNLVAGSNLEATVQQILDM 182
PA PA PV SS S+++ A S LV G + E V +I+ M
Sbjct: 118 SVTQQEKPAEKPAETPVATSPTATDSTSGDSSRSNLFEDATSALVTGQSYENMVTEIMSM 177
Query: 183 GGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQ 242
G ++RE VI ALRA++NNP+RAVEYL GIP G+ +Q
Sbjct: 178 G---YEREQVIAALRASFNNPDRAVEYLLMGIP-----------------GDRESQAVVD 217
Query: 243 QPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQP 302
P A + + P++ ++ G L+FLRN QFQ +R ++Q NP +L
Sbjct: 218 TPPAVSTGAPPSSVAAAAATTTASTTTASPGGHPLEFLRNQPQFQQMRQIIQQNPSLLPA 277
Query: 303 MLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG---------EGNVLGQLASAMPQAVT 353
+LQ++G++NP L++ I +HQ F++++NEPV+ + + S +
Sbjct: 278 LLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQGGGGGGGSGGIAEAGSGHMNYIQ 337
Query: 354 VTPEEREAIE 363
VTP+E+EAIE
Sbjct: 338 VTPQEKEAIE 347
>gi|355567554|gb|EHH23895.1| UV excision repair protein RAD23-like protein B, partial [Macaca
mulatta]
Length = 387
Score = 172 bits (436), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 137/373 (36%), Positives = 192/373 (51%), Gaps = 56/373 (15%)
Query: 23 VSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSSS 82
V +K+ IE+ +G D +P + Q LI+ GK+L D T L+E K+ E +FVVVM+TK K S+
Sbjct: 1 VKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPKAVST 60
Query: 83 GA--STVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPA 140
A +T +APA+ TSS T Q T APT P P SA + PAPA A
Sbjct: 61 PAPATTQQSAPASTTAITSSTATTVAQAPTPVPALAPTSTPASITPASATASSEPAPASA 120
Query: 141 ---PAPAPAPAPAPV-------------SSVSDVYGQAASNLVAGSNLEATVQQILDMGG 184
A PA PV SS S+++ A S LV G + E V +I+ MG
Sbjct: 121 TKQKKAAEKPAETPVATSPTATDSTSGDSSRSNLFEDATSALVTGQSYENMVTEIMSMG- 179
Query: 185 GSWDRETVIRALRAAYNNPERAVEYLYSGIP---EQTAV--PPVARASAGGQAGNPPAQT 239
++RE VI ALRA++NNP+RAVEYL GIP E AV PP A ++ Q+ A
Sbjct: 180 --YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAVVDPPQAASTGAPQSSAVAAAA 237
Query: 240 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQI 299
+SG G P L+FLRN QFQ +R ++Q NP +
Sbjct: 238 ATTTATTTTTSSG-----------GHP----------LEFLRNQPQFQQMRQIIQQNPSL 276
Query: 300 LQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG---------EGNVLGQLASAMPQ 350
L +LQ++G++NP L++ I +HQ F++++NEPV+ + + S
Sbjct: 277 LPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQGGGGGGGSGGIAEAGSGPMN 336
Query: 351 AVTVTPEEREAIE 363
+ VTP+E+EAIE
Sbjct: 337 YIQVTPQEKEAIE 349
>gi|440908044|gb|ELR58113.1| UV excision repair protein RAD23-like protein B, partial [Bos
grunniens mutus]
Length = 386
Score = 171 bits (432), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 133/378 (35%), Positives = 188/378 (49%), Gaps = 67/378 (17%)
Query: 23 VSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSSS 82
V +K+ IE+ +G D +P + Q LI+ GK+L D T L+E K+ E +FVVVM+TK K
Sbjct: 1 VRALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPK---- 56
Query: 83 GASTVSAAPANQAQTTSSAPPTSTQPT-------------------TTSQTPAPTVAPPQ 123
+ + APA Q+ S+A T + T S TPAPT A +
Sbjct: 57 --AVTTPAPATTQQSNSAATTTVSSSTAPAVTQAPAPAPASAPTPTPVSVTPAPTTASSE 114
Query: 124 SVPESAPPPAAPAPAP-----APAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQ 178
P SA PA P A PA + + SS S+++ A S LV G + E V +
Sbjct: 115 PAPASAAKQEKPAEGPVETPVATTPASTDSTSGDSSRSNLFEDATSALVTGQSYENMVTE 174
Query: 179 ILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP----EQTAVPPVARASAGGQAGN 234
I+ MG ++RE VI ALRA++NNP+RAVEYL GIP Q V P AS G +
Sbjct: 175 IMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAVVDPPPAASTGAPQSS 231
Query: 235 PPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQ 294
A +SG G P L+FLRN QFQ +R ++Q
Sbjct: 232 VAAAAATTTATTTTTSSG-----------GHP----------LEFLRNQPQFQQMRQIIQ 270
Query: 295 ANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQA--- 351
NP +L +LQ++G++NP L++ I +HQ F++++NEPV+ G G + A
Sbjct: 271 QNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQGGGGGGGSGGIAEAG 330
Query: 352 ------VTVTPEEREAIE 363
+ VTP+E+EAIE
Sbjct: 331 GGHMNYIQVTPQEKEAIE 348
>gi|296190503|ref|XP_002743221.1| PREDICTED: UV excision repair protein RAD23 homolog B isoform 1
[Callithrix jacchus]
Length = 388
Score = 171 bits (432), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 139/375 (37%), Positives = 196/375 (52%), Gaps = 60/375 (16%)
Query: 23 VSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSSS 82
V +K+ IE+ +G D +P + Q LI+ GK+L D T L+E K+ E +FVVVM+TK K S+
Sbjct: 2 VKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPKAVST 61
Query: 83 --GASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPA 140
A+T +APA+ TSS T Q T + APT P P SA A+P PAPA
Sbjct: 62 PAPATTQQSAPASTTAVTSSTVTTVAQAPTPAPALAPTSTPSSVTPASA--TASPEPAPA 119
Query: 141 PA-----PAPAPAPAPVSSV-------------SDVYGQAASNLVAGSNLEATVQQILDM 182
A PA PA PV+S S+++ A S LV G + E V +I+ M
Sbjct: 120 SATKQEKPAEKPAETPVASSPTSTDSTSGDSSRSNLFEDATSALVTGQSYENMVTEIMSM 179
Query: 183 GGGSWDRETVIRALRAAYNNPERAVEYLYSGIP---EQTAV--PPVARASAGGQAGNPPA 237
G ++RE VI ALRA++NNP+RAVEYL GIP E AV PP A ++ Q+ A
Sbjct: 180 G---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRENQAVVDPPQAASTGAPQSSAVAA 236
Query: 238 QTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANP 297
+SG G P L+FLRN QFQ +R ++Q NP
Sbjct: 237 AAATTTATTTTTSSG-----------GHP----------LEFLRNQPQFQQMRQIIQQNP 275
Query: 298 QILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG---------EGNVLGQLASAM 348
+L +LQ++G++NP L++ I +HQ F++++NEPV+ + + S
Sbjct: 276 SLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQGGGGGGGSGGIAEAGSGH 335
Query: 349 PQAVTVTPEEREAIE 363
+ VTP+E+EAIE
Sbjct: 336 MNYIQVTPQEKEAIE 350
>gi|148225642|ref|NP_001089431.1| uncharacterized protein LOC734481 [Xenopus laevis]
gi|63101219|gb|AAH94481.1| MGC115064 protein [Xenopus laevis]
Length = 419
Score = 170 bits (431), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 136/400 (34%), Positives = 202/400 (50%), Gaps = 56/400 (14%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++ +KTL+ F+I++ E+ V +K+ IE +G D +P + Q LI+ GK+L D L+
Sbjct: 1 MQITLKTLQQQTFKIDIDAEETVKALKEKIELEKGKDAFPVAGQKLIYAGKILNDDIALK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTP----- 115
E K+ E +FVVVM+TK K GAS S+AP+ +SA + + TP
Sbjct: 61 EYKIDEKNFVVVMVTKPK----GAS-CSSAPSPATSQPASAASPAPASPPLTYTPIARQN 115
Query: 116 APTVAP-PQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVS------------------ 156
AP P P S+P + P PAAP P+ AP +VS
Sbjct: 116 APIPLPVPFSLP-TVPTPAAPTSEPSTTTAPEEEKPEEKTVSPPETVSPSSTECSLPTDS 174
Query: 157 ---DVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 213
++ A S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL G
Sbjct: 175 SRPSIFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMG 231
Query: 214 IPEQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAG 273
IP + QA P + + P P + P PL + +
Sbjct: 232 IP----------SDREDQAVAEPPEALSSTPTLTPPLTQPLTQPLPAAAGAAATTTTPST 281
Query: 274 AGT----LDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLI 329
T LDFL+N QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F++++
Sbjct: 282 PSTGGNPLDFLQNQPQFQQMRQIIQQNPSLLPALLQQIGRENPSLLQQISQHQEQFIQML 341
Query: 330 NEPV------EGGEGNVLGQLASAMPQAVTVTPEEREAIE 363
N+PV GG V + S + VTP+E+EAIE
Sbjct: 342 NDPVPEGGREGGGGRGVAAEAGSGHMNYIQVTPQEKEAIE 381
>gi|41056115|ref|NP_956858.1| UV excision repair protein RAD23 homolog B [Danio rerio]
gi|33989500|gb|AAH56578.1| RAD23 homolog B (S. cerevisiae) [Danio rerio]
Length = 382
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 130/375 (34%), Positives = 201/375 (53%), Gaps = 43/375 (11%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++ +KTL+ F+I++ E+ V +K+ IE +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQITLKTLQQQTFKIDIDAEETVKALKEKIENEKGKDGFPVAGQKLIYAGKILSDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E K+ E +FVVVM+TK K +S+ A S++ ++ + TT+SA + +
Sbjct: 61 EYKIDEKNFVVVMVTKPKSASAPAPPSSSSSSSSSSTTASASAAPSAAPVSESPSEEEKK 120
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVS----DVYGQAASNLVAGSNLEATV 176
P + P S P APA PVSS S +++ +A S LV G + E V
Sbjct: 121 PSEEKPSSDP---------------APATTPVSSGSLPNANIFEEATSALVTGQSYENMV 165
Query: 177 QQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPP 236
+I+ MG ++R+ V+ ALRA++NNP+RAVEYL +GIP + V A +G+ P
Sbjct: 166 TEIMLMG---YERDRVVAALRASFNNPDRAVEYLLTGIPAEGEGSVVGAVDAVSPSGSTP 222
Query: 237 AQTQAQQPAAPAPTSGPN----ANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTM 292
A A PA S P+ A P S +GA L+FLRN QF +R +
Sbjct: 223 ASAPA--PAISTGLSSPSSTAPAQP-----------SSASGANPLEFLRNQPQFLQMRQI 269
Query: 293 VQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQA- 351
+Q NP +L +LQ++G++NP L++ I HQ F++++NEPV+ +
Sbjct: 270 IQQNPSLLPALLQQIGRENPQLLQQISSHQEQFIQMLNEPVQEAGQGGGAGGVAEAGGGH 329
Query: 352 ---VTVTPEEREAIE 363
+ VTP+E+EAIE
Sbjct: 330 MNYIQVTPQEKEAIE 344
>gi|410978807|ref|XP_003995779.1| PREDICTED: UV excision repair protein RAD23 homolog B isoform 2
[Felis catus]
Length = 387
Score = 169 bits (427), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 130/368 (35%), Positives = 189/368 (51%), Gaps = 47/368 (12%)
Query: 23 VSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSSS 82
V +K+ IE+ +G D +P + Q LI+ GK+L D T L+E K+ E +FVVVM+TK K ++
Sbjct: 2 VKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPKAVTT 61
Query: 83 GA--STVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPA 140
A +T + PA +S+ P Q T+ APT P P S + PAPA A
Sbjct: 62 PAPATTQQSNPATTTTVSSTTAPAVVQVPTSPPALAPTPTPASITPASTTASSEPAPASA 121
Query: 141 ---PAPAPAPAPAPVSSV-------------SDVYGQAASNLVAGSNLEATVQQILDMGG 184
PA PA PV++ S+++ A S LV G + E V +I+ MG
Sbjct: 122 TKQEKPAEKPAETPVATSPTSTDSTSGDSSRSNLFEDATSALVTGQSYENMVTEIMSMG- 180
Query: 185 GSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQQP 244
++RE VI ALRA++NNP+RAVEYL GIP R S P T A Q
Sbjct: 181 --YEREQVIAALRASFNNPDRAVEYLLMGIPGD-------RESQAVVDTPPAVSTGAPQS 231
Query: 245 AAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQPML 304
+ A + A+ P G P L+FLRN QFQ +R ++Q NP +L +L
Sbjct: 232 SVAAAAATTTASTTTASPGGHP----------LEFLRNQPQFQQMRQIIQQNPSLLPALL 281
Query: 305 QELGKQNPHLMRLIQEHQTDFLRLINEPVEGG---------EGNVLGQLASAMPQAVTVT 355
Q++G++NP L++ I +HQ F++++NEPV+ + + S + VT
Sbjct: 282 QQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQGGGGGGGSGGIAEAGSGHMNYIQVT 341
Query: 356 PEEREAIE 363
P+E+EAIE
Sbjct: 342 PQEKEAIE 349
>gi|452824592|gb|EME31594.1| nucleotide excision repair protein [Galdieria sulphuraria]
Length = 432
Score = 168 bits (426), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 134/405 (33%), Positives = 199/405 (49%), Gaps = 75/405 (18%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVT-TL 59
MK+ KTL+G F++E +D V++VK+ + VQG + S + LI GKVL + L
Sbjct: 1 MKLRFKTLQGKEFDLETSLDDTVAEVKRKVAAVQGFEQDALSCR-LIFSGKVLSNENEKL 59
Query: 60 EENKVAENSFVVVMLTKSKVSSS--GASTVSAAPANQAQTTSSAPPTS-TQPTTTSQTPA 116
++ V E+SF+VVM K + +S+ + A +A+TT TS + S T A
Sbjct: 60 QDLNVKEDSFLVVMPPKKTYQKTMGQSSSKTDAQGKEAETTRQKETTSESVQEKQSSTTA 119
Query: 117 PTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATV 176
T+ A + P +S+ V GS E TV
Sbjct: 120 VTINNNDRDETKATSSSQPTSG-----------------------TSSDFVIGSQYETTV 156
Query: 177 QQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE-------QTAVPPVARASAG 229
+ +++MG ++ + V RALRAA++NP+RAVEYL++GIPE QT++P G
Sbjct: 157 KNLMEMG---FEEQQVKRALRAAFHNPDRAVEYLFNGIPENLERELGQTSLPERTSPQVG 213
Query: 230 GQAGNPPAQTQAQQPAAPAPTSGPN----ANPLDLF-PQ--------GLPNMGSNAGAGT 276
TQ + + +S N + P ++F PQ G + GS G+
Sbjct: 214 H---TDRTATQENRTGSSGVSSIGNQATDSQPFNMFEPQRSQTAQQGGTESTGS---TGS 267
Query: 277 LDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG 336
LDFL QF +R ++QANP+ILQPMLQEL + NP L+ LI ++Q +F+RL+NEP E
Sbjct: 268 LDFLTRIPQFNVMRRLIQANPRILQPMLQELAQANPSLLDLIHQNQQEFVRLLNEPTEDS 327
Query: 337 EG----------NVLGQLA--------SAMPQAVTVTPEEREAIE 363
EG N + L+ S+ + V+PEERE IE
Sbjct: 328 EGLSDEQVQELLNSISGLSEGGNTGEESSGVSYIQVSPEEREQIE 372
>gi|256082440|ref|XP_002577464.1| uv excision repair protein rad23 [Schistosoma mansoni]
gi|84657284|gb|ABC60029.1| DNA repair protein [Schistosoma mansoni]
gi|360044630|emb|CCD82178.1| putative uv excision repair protein rad23 [Schistosoma mansoni]
Length = 354
Score = 168 bits (426), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 126/364 (34%), Positives = 178/364 (48%), Gaps = 51/364 (14%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV KTL F ++ + +D + DVKK IE GS+ + A Q LIH GKV++D +L+
Sbjct: 1 MKVTFKTLMQQTFVLDFQEDDLIGDVKKKIEAKWGSE-FDARTQKLIHSGKVMEDSKSLK 59
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ KV E+ FVVVM VS T A A + S P T+PTT ++P V
Sbjct: 60 DYKVTESGFVVVM----SVSKPSKDTTKEASA----SVQSNPTGETKPTTDKKSP---VT 108
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P S P + + P AP SS + G S+LV G N E V++++
Sbjct: 109 EANEAPSSKPDANSQSNLPTVTTAP-------SSATSTLGFGESSLVTGENFERVVKELM 161
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSG-IPEQTAVPPVARASAGGQAGNPPAQT 239
MG ++R VI+A+RA +NNP+RA EYL SG IP V ++
Sbjct: 162 SMG---FERSLVIQAMRAGFNNPDRAFEYLSSGNIPNVDIV----------DQSREREES 208
Query: 240 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQI 299
++ P P T P G ++GS L L QFQ +R +VQANP++
Sbjct: 209 ESVSPEGPGDTDTP----------GSESLGSEDPIAALASL---PQFQQMRALVQANPEL 255
Query: 300 LQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEER 359
L ++Q++G N L RLIQE++ FL IN PV G + S +T+T EER
Sbjct: 256 LPQLIQQIGNDNADLFRLIQENEQAFLEFINTPVTG-----TTRPGSQRQTVLTMTAEER 310
Query: 360 EAIE 363
A++
Sbjct: 311 AAVD 314
>gi|387017982|gb|AFJ51109.1| UV excision repair protein RAD23 homolog B-like [Crotalus
adamanteus]
Length = 409
Score = 167 bits (423), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 132/388 (34%), Positives = 198/388 (51%), Gaps = 42/388 (10%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++ +KTL+ F+I++ + V +K+ IE +G D +P + Q LI+ GK+L D T L
Sbjct: 1 MQITLKTLQQQTFKIDIDCGETVKALKEKIELEKGKDAFPVAGQKLIYAGKILNDDTALN 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPT-- 118
E K+ E +FVVVM+TK K +++ + T + + T +S P + + PA
Sbjct: 61 EYKIDEKNFVVVMVTKPKAAAAPSPTTAQQSNDTTTTVTSTTPAAVPKLVPTPVPAQVSV 120
Query: 119 ------VAPPQSVPESAPPPAAPAPAPAPAPAPA-PAPAPVS--------SVSDVYGQAA 163
+ ESAP A PA P PA +P S S S+++ A
Sbjct: 121 SAPTASTPAAAAACESAPVSATVEEKPADKPVETPPATSPTSTESSIGDISRSNLFEDAT 180
Query: 164 SNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPV 223
S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP
Sbjct: 181 SALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGD------ 231
Query: 224 ARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNS 283
R S G +PP Q + A S A S+ G L+FLRN
Sbjct: 232 -RESQG--MADPP-----QAASTAASPSSAVAAAAAATTTTTTTTTSSTGGHPLEFLRNQ 283
Query: 284 QQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVE--------G 335
QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F++++NEPV+
Sbjct: 284 PQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQESGQGSGGS 343
Query: 336 GEGNVLGQLASAMPQAVTVTPEEREAIE 363
G G + + S + VTP+E+EAIE
Sbjct: 344 GSGGGVVEAGSRHMNYIQVTPQEKEAIE 371
>gi|71896193|ref|NP_001025578.1| RAD23 homolog B [Xenopus (Silurana) tropicalis]
gi|60551813|gb|AAH91020.1| rad23b protein [Xenopus (Silurana) tropicalis]
Length = 416
Score = 167 bits (423), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 132/401 (32%), Positives = 199/401 (49%), Gaps = 61/401 (15%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++ +KTL+ F+I++ E+ V +K+ IE +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQITLKTLQQQTFKIDIDGEETVKALKEKIELEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSK--VSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAP- 117
E K+ E +FVVVM+TK K SS + ++ PA+ A ++PP + P P P
Sbjct: 61 EYKIDEKNFVVVMVTKPKGAACSSTPTPAASQPASAAAPAPASPPLTYTPIARQNAPIPL 120
Query: 118 ---------------------TVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPV-SSV 155
T AP + PE +P +P+ P SS
Sbjct: 121 PVPFSIPAVPAPAAPTSEPSTTTAPKEEKPEE----KTDSPQETVSPSSTECSLPTDSSR 176
Query: 156 SDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 215
++ A S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP
Sbjct: 177 PSLFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIP 233
Query: 216 EQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAG 275
+ GQA P QT + P P P + A + G
Sbjct: 234 ----------SDREGQAVAEPPQTLSSTPTQPLPAAAGAAA------TTTTPSTPSTGGN 277
Query: 276 TLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPV-- 333
LDFL+N QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F++++N+PV
Sbjct: 278 PLDFLQNQPQFQQMRQIIQQNPSLLPALLQQIGRENPSLLQQISQHQEQFIQMLNDPVPE 337
Query: 334 -----------EGGEGNVLGQLASAMPQAVTVTPEEREAIE 363
GG + + S + VTP+E+EAIE
Sbjct: 338 SGGQGGGGGGGGGGGRGIAAEAGSGHMNYIQVTPQEKEAIE 378
>gi|126323174|ref|XP_001366912.1| PREDICTED: UV excision repair protein RAD23 homolog A-like
[Monodelphis domestica]
Length = 366
Score = 167 bits (423), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 136/383 (35%), Positives = 191/383 (49%), Gaps = 81/383 (21%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
V +KTL+ F+I ++P + V +K+ IE +G D +P S Q LI+ GK+L D + +
Sbjct: 5 VTLKTLQQQTFKIRMEPGETVKVLKEKIEAEKGRDAFPVSGQKLIYAGKILSDDVPIRDY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
K+ E +FVVVM+TK+K A PA +S PP + P + A T+ P
Sbjct: 65 KIDEKNFVVVMVTKAK----------AGPA------TSVPPEPSAPAS-----ANTLEPS 103
Query: 123 QSVPESAPPPAAPAPAPAP--------------APAPAPAPAPVSSVSDVYGQAASNLVA 168
P + A P P PAP P P P S S AAS LV
Sbjct: 104 TPTPPAPTIVAMPLPPPAPNEEKKATEESAAGTLPEARPGSLPSSGSSGQEDDAASTLVT 163
Query: 169 GSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASA 228
GS E + +I+ MG ++RE V+ ALRA+YNNP RAVEYL GIP S
Sbjct: 164 GSEYETMLTEIMSMG---YERERVVAALRASYNNPHRAVEYLLMGIP----------GSP 210
Query: 229 GGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQA 288
++G P Q ++Q P PAP G N L+FLR+ QFQ
Sbjct: 211 EPESG--PVQ-ESQAPEQPAPEGGENP---------------------LEFLRDQPQFQN 246
Query: 289 LRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP------VEGGEGNVLG 342
+R ++Q NP +L +LQ+LG++NP L++ I HQ F++++NEP + EG V G
Sbjct: 247 MRQVIQQNPSLLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPTGELADMSDVEGEV-G 305
Query: 343 QLASAMPQA--VTVTPEEREAIE 363
+ PQ + VTP+E+EAIE
Sbjct: 306 AIGEESPQMNYIQVTPQEKEAIE 328
>gi|348522726|ref|XP_003448875.1| PREDICTED: UV excision repair protein RAD23 homolog B-like
[Oreochromis niloticus]
Length = 481
Score = 167 bits (422), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 156/450 (34%), Positives = 218/450 (48%), Gaps = 95/450 (21%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+ + +KTL+ F IE+ PE V +K+ IE +G D +P+ Q LI+ GK+L D L+
Sbjct: 2 LTITLKTLQQQTFRIEIDPELTVKALKEKIEEHRGKDAFPSVGQKLIYAGKILNDDIPLK 61
Query: 61 ENKVAENSFVVVMLTKSK-----------------------------------VSSSGAS 85
E K+ E +FVVVM+TK K V S+
Sbjct: 62 EYKIDEKNFVVVMVTKPKPTSPAEAATHSVPTPAATPVPPPAAAPAPASGPKQVPSTPTH 121
Query: 86 TVSAA-PANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQSVPESAPPPAAPAP------- 137
T SAA PA+Q+ S APP+ + TT + A S ESAP + AP
Sbjct: 122 TTSAAVPASQSVPPSEAPPSVQENTTVASVGATAKPTLDSHSESAPASGSTAPVASSTAP 181
Query: 138 -----APAPAPAPAPAPA-------------------PV----SSVSDVYG---QAASNL 166
APA P+ +P PA PV SS+ D G +AAS L
Sbjct: 182 EAVEEAPALVPSDSPTPAAQTEEELREDPENEPSDTAPVQSSASSLVDELGLLEEAASIL 241
Query: 167 VAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARA 226
V G E V +I+ +G ++RE V+ ALRA+YNNP+RAVEYL GIP + + +
Sbjct: 242 VTGPEYENLVSEIMSIG---YEREQVVAALRASYNNPDRAVEYLLMGIPARASDLHNPQP 298
Query: 227 SAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGS---NAGAGT------L 277
S NP + + P P N +++F QG P GS AG G+ L
Sbjct: 299 SRHSTPANPSTPSTEEPPQQPPAPPSSVINDVEVF-QG-PVSGSQPVTAGGGSGSIGNPL 356
Query: 278 DFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGE 337
+FLRN QFQ +R ++Q NP +L +LQ+LG+ NP L++ I EHQ F++++NEP G
Sbjct: 357 EFLRNQPQFQQMRQIIQQNPALLPALLQQLGRDNPQLLQQITEHQERFVQMLNEPQAGDT 416
Query: 338 GNVLGQLASA----MPQAVTVTPEEREAIE 363
G G+ A A + VTP+E+EAIE
Sbjct: 417 G---GEDADAHGSPHTNYIQVTPQEKEAIE 443
>gi|449266094|gb|EMC77210.1| UV excision repair protein RAD23 like protein B, partial [Columba
livia]
Length = 378
Score = 167 bits (422), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 128/370 (34%), Positives = 186/370 (50%), Gaps = 59/370 (15%)
Query: 23 VSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSSS 82
V +K+ IE+ +G D +P + Q LI+ GK+L D T L+E K+ E +FVVVM+TK K +++
Sbjct: 1 VKALKEKIESERGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPK-AAA 59
Query: 83 GASTVS----------------AAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQSVP 126
GA+ S AP A P P + AP AP
Sbjct: 60 GATQQSDATSAVSSTTAAAVTVTAPVPTAAPVPDPVPPPPAPDEVACESAPVTAPE---- 115
Query: 127 ESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILDMGGGS 186
E P P P A +P+ + +S S+++ A S LV G + E V +I+ MG
Sbjct: 116 EEKPAEKTPEPPAAISPSSTESTTGDTSRSNLFEDAISALVTGQSYENMVTEIISMG--- 172
Query: 187 WDRETVIRALRAAYNNPERAVEYLYSGIP--EQTAVPPVARASAGGQAGNPPAQTQAQQP 244
++RE VI ALRA++NNP+RAVEYL GIP Q P AS G +Q+
Sbjct: 173 YEREQVIAALRASFNNPDRAVEYLLMGIPGDNQAVAEPSQAASTGA--------SQSSTV 224
Query: 245 AAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQPML 304
A T +P S+ G L+FLRN QFQ +R ++Q NP +L +L
Sbjct: 225 ATSVAT--------------IPMTTSSLGGHPLEFLRNQPQFQQMRQIIQQNPSLLPALL 270
Query: 305 QELGKQNPHLMRLIQEHQTDFLRLINEP-VE-------GGEGNVLGQLASA---MPQAVT 353
Q++G++NP L++ I +HQ F+ ++NEP VE +G +G +A A +
Sbjct: 271 QQIGRENPQLLQQISQHQEHFIHMLNEPAVESRQGLSGSDDGASIGGVAEAGNGHMNYIQ 330
Query: 354 VTPEEREAIE 363
VTP+E+EAIE
Sbjct: 331 VTPQEKEAIE 340
>gi|387017980|gb|AFJ51108.1| UV excision repair protein RAD23 homolog A-like [Crotalus
adamanteus]
Length = 360
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 136/375 (36%), Positives = 200/375 (53%), Gaps = 71/375 (18%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
V +KTL+ F+I ++P++ V +K+ IE +G + +P S Q LI+ GK+L D ++E
Sbjct: 5 VTLKTLQQQTFKIRMEPDETVRVLKEKIEAEKGKEAFPVSGQKLIYAGKILSDDVPIKEY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
K+ E +FVVVM+TK+K T S AP + + + A PT+ +PT +S A TV+P
Sbjct: 65 KIDEKNFVVVMVTKNK-------TGSGAPVS---SPTDAAPTA-EPTPSSGPTAATVSPL 113
Query: 123 QSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSV--SDVYGQ---AASNLVAGSNLEATVQ 177
Q+ P S P P + +P + V SV S G+ AAS LV GS E +
Sbjct: 114 QASPSSEEKP------PEESVTVSPLESTVGSVPSSGSMGREDDAASTLVTGSEYETMLT 167
Query: 178 QILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPA 237
+I+ MG ++RE V+ ALRA+YNNP RAVEYL +GIP G + A
Sbjct: 168 EIMSMG---YERERVVAALRASYNNPHRAVEYLLTGIP--------------GSSEPERA 210
Query: 238 QTQAQQPA-APAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQAN 296
Q QP PAP G L+FLR+ QFQ +R ++Q N
Sbjct: 211 PIQESQPQDQPAP----------------------EGENPLEFLRDQPQFQNMRQVIQQN 248
Query: 297 PQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVE--------GGEGNVLGQLASAM 348
P +L +LQ+LG++NP L++ I +HQ F++++NEP+ GE +G+ A M
Sbjct: 249 PALLPALLQQLGQENPQLLQQISQHQEQFIQMLNEPLGEMADIADIEGEMGAIGEEAPQM 308
Query: 349 PQAVTVTPEEREAIE 363
+ VTP+E+EAIE
Sbjct: 309 -NYIQVTPQEKEAIE 322
>gi|348518002|ref|XP_003446521.1| PREDICTED: UV excision repair protein RAD23 homolog A-like
[Oreochromis niloticus]
Length = 365
Score = 166 bits (421), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 136/370 (36%), Positives = 204/370 (55%), Gaps = 50/370 (13%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++ +KTL+ +IE+ PE V +K+ IE +G D +P S Q LI+ GK+L+D T ++
Sbjct: 1 MQITLKTLQQQTIQIEIDPEQTVKALKEKIEAERGKDNFPVSGQKLIYAGKILQDDTPIK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ K+ E +FVVVM++K+K +++ + +VS AP Q + S T+T+
Sbjct: 61 DYKIDEKNFVVVMVSKAKPAAAASPSVSEAPKPPVQDSGS--------TSTAAPTTNPTP 112
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYG-QAASNLVAGSNLEATVQQI 179
P P + P P+ A + A A P P SS G A+S LV G+ EA + +I
Sbjct: 113 APAPAPAAVPIPSGEAKEESSAVATEPQ-QPASSSGGSQGLDASSTLVTGAEYEAMLTEI 171
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 239
+ MG ++RE V+ ALRA++NNP RAVEYL +GIP S+ Q NPPAQ
Sbjct: 172 MSMG---YERERVVAALRASFNNPHRAVEYLLTGIP-----------SSPVQESNPPAQ- 216
Query: 240 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQI 299
APTSG P +P G L FLR QF +R +Q NP +
Sbjct: 217 --------APTSGTTEAP------SVPE-----GENPLAFLRTQPQFLHMRQAIQQNPAL 257
Query: 300 LQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPV-EGGEGNVLGQLASAMPQA-----VT 353
L +LQ+LG++NP L++ I +HQ F++++NEPV EGG+ +G++ +A + +
Sbjct: 258 LPALLQQLGRENPQLLQQISQHQELFIQMLNEPVGEGGDAPEVGEMGAAGEEGAPVNYIQ 317
Query: 354 VTPEEREAIE 363
VTP+E+EAIE
Sbjct: 318 VTPQEKEAIE 327
>gi|395516067|ref|XP_003762216.1| PREDICTED: UV excision repair protein RAD23 homolog B [Sarcophilus
harrisii]
Length = 482
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 134/375 (35%), Positives = 195/375 (52%), Gaps = 58/375 (15%)
Query: 23 VSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSSS 82
V +K+ IE+ +G D +P + Q LI+ GK+L D T L+E K+ E +FVVVM+TK K +++
Sbjct: 94 VKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPKAAAT 153
Query: 83 GASTVSAAPANQAQTTSSAPPTSTQPTTTSQ--TPAPTVAPPQSVPESAPPPAAPAPAPA 140
ST S A Q+ ++ +S+ + +Q TP+P +AP + P PAA A P
Sbjct: 154 --STPSPATTQQSNPATTTTVSSSSAASVAQAPTPSPALAPTPTPTSVTPTPAAAACEPI 211
Query: 141 PA-------PAPAPAPAPV-------------SSVSDVYGQAASNLVAGSNLEATVQQIL 180
P PA P APV SS S+++ A S LV G + E V +I+
Sbjct: 212 PTSTPKEEKPAEKPVEAPVGISPTSSDSTLGDSSRSNLFEDATSALVTGQSYENMVTEIM 271
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP----EQTAVPPVARASAGGQAGNPP 236
MG ++RE VI ALRA++NNP+RAVEYL GIP Q V P AS G +
Sbjct: 272 SMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAVVDPPQAASTGAAQSSAV 328
Query: 237 AQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQAN 296
A A A T+ +P L+FLRN QFQ +R ++Q N
Sbjct: 329 AAAAATTTATTTTTTTSGGHP-------------------LEFLRNQPQFQQMRQIIQQN 369
Query: 297 PQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPV--------EGGEGNVLGQLASAM 348
P +L +LQ++G++NP L++ I +HQ F++++NEPV GG + + S
Sbjct: 370 PSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQESGGQGGGGGGSGGIAEAGSGH 429
Query: 349 PQAVTVTPEEREAIE 363
+ VTP+E+EAIE
Sbjct: 430 MNYIQVTPQEKEAIE 444
>gi|56789929|gb|AAH88364.1| RAD23 homolog A (S. cerevisiae) [Homo sapiens]
Length = 362
Score = 165 bits (418), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 134/376 (35%), Positives = 197/376 (52%), Gaps = 71/376 (18%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
++ E +FVVVM+TK+K +G T SA P A PT+ ++TS PAPT
Sbjct: 65 RIDEKNFVVVMVTKTK---AGQGT-SAPP--------EASPTAAPESSTSFPPAPTSGM- 111
Query: 123 QSVPESAPPPAA---PAPAPAPAPAPAPAPAPVSSVSDVYG----QAASNLVAGSNLEAT 175
S PPPAA +P+ APA +P S S AAS LV GS E
Sbjct: 112 -----SHPPPAAREDKSPSEESAPATSPESVSGSVPSSGSSGREEDAASTLVTGSEYETM 166
Query: 176 VQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNP 235
+ +I+ MG ++RE V+ ALRA+YNNP RAVEYL +GIP S + G+
Sbjct: 167 LTEIMSMG---YERERVVAALRASYNNPHRAVEYLLTGIP----------GSPEPEHGSV 213
Query: 236 PAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQA 295
++QPA + AG L+FLR+ QFQ +R ++Q
Sbjct: 214 QESQVSEQPA------------------------TEAGENPLEFLRDQPQFQNMRQVIQQ 249
Query: 296 NPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP------VEGGEGNVLGQLASAMP 349
NP +L +LQ+LG++NP L++ I HQ F++++NEP + EG V G + P
Sbjct: 250 NPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELADISDVEGEV-GAIGEEAP 308
Query: 350 QA--VTVTPEEREAIE 363
Q + VTP+E+EAIE
Sbjct: 309 QMNYIQVTPQEKEAIE 324
>gi|37595434|gb|AAQ94603.1| RAD23 homolog B [Danio rerio]
Length = 380
Score = 164 bits (416), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 130/375 (34%), Positives = 200/375 (53%), Gaps = 45/375 (12%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++ +KTL+ F+I++ E+ V +K+ IE +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQITLKTLQQQTFKIDIDAEETVKALKEKIENEKGKDGFPVAGQKLIYAGKILSDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E K+ E +FVVVM+TK K +S+ A S++ ++ + TT+SA +
Sbjct: 61 EYKIDEKNFVVVMVTKPKSASAPAPPSSSSSSSSSSTTASASAAPSA------------- 107
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVS----DVYGQAASNLVAGSNLEATV 176
V ES P+ PAPA PVSS S +++ +A S L G + E V
Sbjct: 108 --APVSESPSEEEKKPSEEKPSSDPAPATTPVSSGSLPNANIFEEATSAL--GQSYENMV 163
Query: 177 QQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPP 236
+I+ MG ++R+ V+ ALRA++NNP+RAVEYL +GIP + V A +G+ P
Sbjct: 164 TEIMLMG---YERDRVVAALRASFNNPDRAVEYLLTGIPAEGEGSVVGAVDAVSPSGSTP 220
Query: 237 AQTQAQQPAAPAPTSGPN----ANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTM 292
A A PA S P+ A P S +GA L+FLRN QF +R +
Sbjct: 221 ASAPA--PAISTGLSSPSSTAPAQP-----------SSASGANPLEFLRNQPQFLQMRQI 267
Query: 293 VQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQA- 351
+Q NP +L +LQ++G++NP L++ I HQ F++++NEPV+ +
Sbjct: 268 IQQNPSLLPALLQQIGRENPQLLQQISSHQEQFIQMLNEPVQEAGQGGGAGGVAEAGGGH 327
Query: 352 ---VTVTPEEREAIE 363
+ VTP+E+EAIE
Sbjct: 328 MNYIQVTPQEKEAIE 342
>gi|297685061|ref|XP_002820118.1| PREDICTED: UV excision repair protein RAD23 homolog B-like isoform
1 [Pongo abelii]
Length = 388
Score = 164 bits (416), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 136/378 (35%), Positives = 195/378 (51%), Gaps = 66/378 (17%)
Query: 23 VSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSSS 82
V +K+ IE+ +G D +P + Q LI+ GK+L D T L+E K+ E +FVVVM+TK K S+
Sbjct: 2 VKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPKAVST 61
Query: 83 GA--STVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPA 140
A +T +APA+ TSS T Q + TP P +AP S P S P +A A +
Sbjct: 62 PAPATTQQSAPASTTAVTSSTTTTVAQ----APTPVPALAPT-STPASITPASATASSEP 116
Query: 141 PA--------PAPAPAPAPV-------------SSVSDVYGQAASNLVAGSNLEATVQQI 179
+ PA PA PV SS S+++ A S LV G + E V +I
Sbjct: 117 ASASAAKQEKPAEKPAETPVATSPTATDSTSGDSSRSNLFEDATSALVTGQSYENMVTEI 176
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP---EQTAV--PPVARASAGGQAGN 234
+ MG ++RE VI ALRA++NNP+RAVEYL GIP E AV PP A ++ Q+
Sbjct: 177 MSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAVVDPPQAASTGAPQSSA 233
Query: 235 PPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQ 294
A +SG G P L+FLRN QFQ +R ++Q
Sbjct: 234 VAAAAATTTATTTTTSSG-----------GHP----------LEFLRNQPQFQQMRQIIQ 272
Query: 295 ANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG---------EGNVLGQLA 345
NP +L +LQ++G++NP L++ I +HQ F++++NEPV+ + +
Sbjct: 273 QNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQGGGGGGGSGGIAEAG 332
Query: 346 SAMPQAVTVTPEEREAIE 363
S + VTP+E+EAIE
Sbjct: 333 SGHMNYIQVTPQEKEAIE 350
>gi|38492677|pdb|1OQY|A Chain A, Structure Of The Dna Repair Protein Hhr23a
gi|38492966|pdb|1QZE|A Chain A, Hhr23a Protein Structure Based On Residual Dipolar
Coupling Data
Length = 368
Score = 164 bits (416), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 134/376 (35%), Positives = 196/376 (52%), Gaps = 70/376 (18%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D + +
Sbjct: 10 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 69
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
++ E +FVVVM+TK+K +G T SA P A PT+ ++TS PAPT
Sbjct: 70 RIDEKNFVVVMVTKTK---AGQGT-SAPP--------EASPTAAPESSTSFPPAPTSGM- 116
Query: 123 QSVPESAPPPAA---PAPAPAPAPAPAPAPAPVSSVSDVYG----QAASNLVAGSNLEAT 175
S PPPAA +P+ AP +P S S AAS LV GS E
Sbjct: 117 -----SHPPPAAREDKSPSEESAPTTSPESVSGSVPSSGSSGREEDAASTLVTGSEYETM 171
Query: 176 VQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNP 235
+ +I+ MG ++RE V+ ALRA+YNNP RAVEYL +GIP S + G+
Sbjct: 172 LTEIMSMG---YERERVVAALRASYNNPHRAVEYLLTGIP----------GSPEPEHGSV 218
Query: 236 PAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQA 295
++QPA A AG L+FLR+ QFQ +R ++Q
Sbjct: 219 QESQVSEQPATEA-----------------------AGENPLEFLRDQPQFQNMRQVIQQ 255
Query: 296 NPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP------VEGGEGNVLGQLASAMP 349
NP +L +LQ+LG++NP L++ I HQ F++++NEP + EG V G + P
Sbjct: 256 NPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELADISDVEGEV-GAIGEEAP 314
Query: 350 QA--VTVTPEEREAIE 363
Q + VTP+E+EAIE
Sbjct: 315 QMNYIQVTPQEKEAIE 330
>gi|338720420|ref|XP_003364163.1| PREDICTED: UV excision repair protein RAD23 homolog B isoform 2
[Equus caballus]
Length = 387
Score = 164 bits (416), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 129/372 (34%), Positives = 186/372 (50%), Gaps = 55/372 (14%)
Query: 23 VSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSSS 82
V +K+ IE+ +G D +P + Q LI+ GK+L D T L+E K+ E +FVVVM+TK K ++
Sbjct: 2 VKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPKAVTT 61
Query: 83 GA-------------STVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQSVPESA 129
A + S+ AQ + AP + PT S TPA T A + P SA
Sbjct: 62 PAPATTQQSNSATTTTVSSSTAPAAAQAPTPAPALAPAPTPASITPASTTASSEPAPASA 121
Query: 130 PPPAAPAPAPAPAPAPAPAPAPVSSV-----SDVYGQAASNLVAGSNLEATVQQILDMGG 184
PA PA AP + S+ S+++ A S LV G + E V +I+ MG
Sbjct: 122 TKQEKPAEKPAEAPVATSPTSTDSTSGDSSRSNLFEDATSALVTGQSYENMVTEIMSMG- 180
Query: 185 GSWDRETVIRALRAAYNNPERAVEYLYSGIP----EQTAVPPVARASAGGQAGNPPAQTQ 240
++RE VI ALRA++NNP+RAVEYL GIP Q V P AS G + A
Sbjct: 181 --YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAVVDPPPAASTGAPQSSVAAAAA 238
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQIL 300
+SG G P L+FLRN QFQ +R ++Q NP +L
Sbjct: 239 TTTATTTTTSSG-----------GHP----------LEFLRNQPQFQQMRQIIQQNPSLL 277
Query: 301 QPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG---------EGNVLGQLASAMPQA 351
+LQ++G++NP L++ I +HQ F++++NEPV+ + + S
Sbjct: 278 PALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQGGGGGGGSGGIAEAGSGHMNY 337
Query: 352 VTVTPEEREAIE 363
+ VTP+E+EAIE
Sbjct: 338 IQVTPQEKEAIE 349
>gi|4826964|ref|NP_005044.1| UV excision repair protein RAD23 homolog A isoform 1 [Homo sapiens]
gi|426387413|ref|XP_004060163.1| PREDICTED: UV excision repair protein RAD23 homolog A isoform 1
[Gorilla gorilla gorilla]
gi|1709983|sp|P54725.1|RD23A_HUMAN RecName: Full=UV excision repair protein RAD23 homolog A;
Short=HR23A; Short=hHR23A
gi|498146|dbj|BAA04767.1| HHR23A protein [Homo sapiens]
gi|1905912|gb|AAB51177.1| human RAD23A homolog [Homo sapiens]
gi|15559329|gb|AAH14026.1| RAD23 homolog A (S. cerevisiae) [Homo sapiens]
gi|23664450|gb|AAN39383.1| RAD23 homolog A (S. cerevisiae) [Homo sapiens]
gi|60813919|gb|AAX36280.1| RAD23-like A [synthetic construct]
gi|61355208|gb|AAX41114.1| RAD23-like A [synthetic construct]
gi|119604739|gb|EAW84333.1| RAD23 homolog A (S. cerevisiae), isoform CRA_a [Homo sapiens]
gi|119604740|gb|EAW84334.1| RAD23 homolog A (S. cerevisiae), isoform CRA_a [Homo sapiens]
gi|325464287|gb|ADZ15914.1| RAD23 homolog A (S. cerevisiae) [synthetic construct]
gi|410227880|gb|JAA11159.1| RAD23 homolog A [Pan troglodytes]
gi|410257472|gb|JAA16703.1| RAD23 homolog A [Pan troglodytes]
gi|410297508|gb|JAA27354.1| RAD23 homolog A [Pan troglodytes]
gi|410351505|gb|JAA42356.1| RAD23 homolog A [Pan troglodytes]
Length = 363
Score = 164 bits (415), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 134/376 (35%), Positives = 196/376 (52%), Gaps = 70/376 (18%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
++ E +FVVVM+TK+K +G T SA P A PT+ ++TS PAPT
Sbjct: 65 RIDEKNFVVVMVTKTK---AGQGT-SAPP--------EASPTAAPESSTSFPPAPTSGM- 111
Query: 123 QSVPESAPPPAA---PAPAPAPAPAPAPAPAPVSSVSDVYG----QAASNLVAGSNLEAT 175
S PPPAA +P+ AP +P S S AAS LV GS E
Sbjct: 112 -----SHPPPAAREDKSPSEESAPTTSPESVSGSVPSSGSSGREEDAASTLVTGSEYETM 166
Query: 176 VQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNP 235
+ +I+ MG ++RE V+ ALRA+YNNP RAVEYL +GIP S + G+
Sbjct: 167 LTEIMSMG---YERERVVAALRASYNNPHRAVEYLLTGIP----------GSPEPEHGSV 213
Query: 236 PAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQA 295
++QPA A AG L+FLR+ QFQ +R ++Q
Sbjct: 214 QESQVSEQPATEA-----------------------AGENPLEFLRDQPQFQNMRQVIQQ 250
Query: 296 NPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP------VEGGEGNVLGQLASAMP 349
NP +L +LQ+LG++NP L++ I HQ F++++NEP + EG V G + P
Sbjct: 251 NPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELADISDVEGEV-GAIGEEAP 309
Query: 350 QA--VTVTPEEREAIE 363
Q + VTP+E+EAIE
Sbjct: 310 QMNYIQVTPQEKEAIE 325
>gi|402904431|ref|XP_003915049.1| PREDICTED: UV excision repair protein RAD23 homolog A isoform 1
[Papio anubis]
gi|355703206|gb|EHH29697.1| UV excision repair protein RAD23-like protein A [Macaca mulatta]
gi|383420439|gb|AFH33433.1| UV excision repair protein RAD23 homolog A [Macaca mulatta]
Length = 363
Score = 164 bits (415), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 125/369 (33%), Positives = 191/369 (51%), Gaps = 56/369 (15%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
++ E +FVVVM+TK+K ++ A+P ++++S PP PT+ P P
Sbjct: 65 RIDEKNFVVVMVTKTKAGQGTSAPPEASPTAAPESSTSFPPA---PTSGMSHPQPAARED 121
Query: 123 QSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILDM 182
+S E + AP +P P S S AAS LV GS E + +I+ M
Sbjct: 122 KSPSEES--------APTTSPESVSGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSM 173
Query: 183 GGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQ 242
G ++RE V+ ALRA+YNNP RAVEYL +GIP S + G+ ++
Sbjct: 174 G---YERERVVAALRASYNNPHRAVEYLLTGIP----------GSPEPEHGSVQESQVSE 220
Query: 243 QPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQP 302
QPA A AG L+FLR+ QFQ +R ++Q NP +L
Sbjct: 221 QPATEA-----------------------AGENPLEFLRDQPQFQNMRQVIQQNPALLPA 257
Query: 303 MLQELGKQNPHLMRLIQEHQTDFLRLINEP------VEGGEGNVLGQLASAMPQA--VTV 354
+LQ+LG++NP L++ I HQ F++++NEP + EG V G + PQ + V
Sbjct: 258 LLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELADISDVEGEV-GAIGEEAPQMNYIQV 316
Query: 355 TPEEREAIE 363
TP+E+EAIE
Sbjct: 317 TPQEKEAIE 325
>gi|62089006|dbj|BAD92950.1| UV excision repair protein RAD23 homolog A variant [Homo sapiens]
Length = 379
Score = 164 bits (414), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 133/376 (35%), Positives = 196/376 (52%), Gaps = 71/376 (18%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D + +
Sbjct: 22 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 81
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
++ E +FVVVM+TK+K +G T SA P A PT+ ++TS PAPT
Sbjct: 82 RIDEKNFVVVMVTKTK---AGQGT-SAPP--------EASPTAAPESSTSFPPAPTSG-- 127
Query: 123 QSVPESAPPPAA-----PAPAPAPAPAPAPAPAPVSSVSDVYGQ--AASNLVAGSNLEAT 175
S PPPAA P+ AP +P V S + AAS LV GS E
Sbjct: 128 ----MSHPPPAAREDKSPSEESAPTTSPESVSGSVPSSGSSGREEDAASTLVTGSEYETM 183
Query: 176 VQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNP 235
+ +I+ MG ++RE V+ ALRA+YNNP RAVEYL +GIP S + G+
Sbjct: 184 LTEIMSMG---YERERVVAALRASYNNPHRAVEYLLTGIP----------GSPEPEHGSV 230
Query: 236 PAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQA 295
++QPA + AG L+FLR+ QFQ +R ++Q
Sbjct: 231 QESQVSEQPA------------------------TEAGENPLEFLRDQPQFQNMRQVIQQ 266
Query: 296 NPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP------VEGGEGNVLGQLASAMP 349
NP +L +LQ+LG++NP L++ I HQ F++++NEP + EG V G + P
Sbjct: 267 NPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELADISDVEGEV-GAIGEEAP 325
Query: 350 QA--VTVTPEEREAIE 363
Q + VTP+E+EAIE
Sbjct: 326 QMNYIQVTPQEKEAIE 341
>gi|158260839|dbj|BAF82597.1| unnamed protein product [Homo sapiens]
Length = 362
Score = 164 bits (414), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 133/376 (35%), Positives = 196/376 (52%), Gaps = 71/376 (18%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
++ E +FVVVM+TK+K +G T SA P A PT+ ++TS PAPT
Sbjct: 65 RIDEKNFVVVMVTKTK---AGQGT-SAPP--------EASPTAAPESSTSFPPAPTSGM- 111
Query: 123 QSVPESAPPPAA---PAPAPAPAPAPAPAPAPVSSVSDVYG----QAASNLVAGSNLEAT 175
S PPPAA +P+ AP +P S S AAS LV GS E
Sbjct: 112 -----SHPPPAAREDKSPSEESAPTTSPESVSGSVPSSGSSGRGEDAASTLVTGSEYETM 166
Query: 176 VQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNP 235
+ +I+ MG ++RE V+ ALRA+YNNP RAVEYL +GIP S + G+
Sbjct: 167 LTEIMSMG---YERERVVAALRASYNNPHRAVEYLLTGIP----------GSPEPEHGSV 213
Query: 236 PAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQA 295
++QPA + AG L+FLR+ QFQ +R ++Q
Sbjct: 214 QESQVSEQPA------------------------TEAGENPLEFLRDQPQFQNMRQVIQQ 249
Query: 296 NPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP------VEGGEGNVLGQLASAMP 349
NP +L +LQ+LG++NP L++ I HQ F++++NEP + EG V G + P
Sbjct: 250 NPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELADISDVEGEV-GAIGEEAP 308
Query: 350 QA--VTVTPEEREAIE 363
Q + VTP+E+EAIE
Sbjct: 309 QMNYIQVTPQEKEAIE 324
>gi|392996949|ref|NP_001257291.1| UV excision repair protein RAD23 homolog A isoform 2 [Homo sapiens]
gi|208965418|dbj|BAG72723.1| RAD23 homolog A [synthetic construct]
Length = 362
Score = 164 bits (414), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 133/376 (35%), Positives = 196/376 (52%), Gaps = 71/376 (18%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
++ E +FVVVM+TK+K +G T SA P A PT+ ++TS PAPT
Sbjct: 65 RIDEKNFVVVMVTKTK---AGQGT-SAPP--------EASPTAAPESSTSFPPAPTSGM- 111
Query: 123 QSVPESAPPPAA---PAPAPAPAPAPAPAPAPVSSVSDVYG----QAASNLVAGSNLEAT 175
S PPPAA +P+ AP +P S S AAS LV GS E
Sbjct: 112 -----SHPPPAAREDKSPSEESAPTTSPESVSGSVPSSGSSGREEDAASTLVTGSEYETM 166
Query: 176 VQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNP 235
+ +I+ MG ++RE V+ ALRA+YNNP RAVEYL +GIP S + G+
Sbjct: 167 LTEIMSMG---YERERVVAALRASYNNPHRAVEYLLTGIP----------GSPEPEHGSV 213
Query: 236 PAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQA 295
++QPA + AG L+FLR+ QFQ +R ++Q
Sbjct: 214 QESQVSEQPA------------------------TEAGENPLEFLRDQPQFQNMRQVIQQ 249
Query: 296 NPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP------VEGGEGNVLGQLASAMP 349
NP +L +LQ+LG++NP L++ I HQ F++++NEP + EG V G + P
Sbjct: 250 NPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELADISDVEGEV-GAIGEEAP 308
Query: 350 QA--VTVTPEEREAIE 363
Q + VTP+E+EAIE
Sbjct: 309 QMNYIQVTPQEKEAIE 324
>gi|345482490|ref|XP_003424606.1| PREDICTED: UV excision repair protein RAD23 homolog B-like isoform
2 [Nasonia vitripennis]
Length = 377
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 117/345 (33%), Positives = 170/345 (49%), Gaps = 57/345 (16%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + +K L F +E+ V D+K IE +G +P+ Q LI+ GK+L D L
Sbjct: 1 MIITIKNLWQQTFTVEIDATKTVKDLKDKIEAQKG---FPSQHQKLIYAGKILTDEQPLT 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPT-V 119
E + E FVVVM++K K +S + + N +AP T++ PAP
Sbjct: 58 EYNIDEKKFVVVMVSKPKNEASTSDETQSGTDNTKSKEQTAP-------TSTPAPAPVQT 110
Query: 120 APPQSVPESAP---PPAAPAPAPAPAPAPAPA---PAPVSSVSDVYGQAASNLVAGSNLE 173
+ P V E+A P + P P AP P A P P S + ++A L+ G
Sbjct: 111 SVPAQVTEAASVQAPSSVPVPTTAPTRTPETATQQPTPTSVATSNPPESA--LLMGEEYN 168
Query: 174 ATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAG 233
A V I+DMG ++R+ V +ALRA++NNP+RAVEYL +GIP Q
Sbjct: 169 AMVNNIMDMG---YERDQVEQALRASFNNPDRAVEYLLTGIPAQLF-------------E 212
Query: 234 NPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMV 293
+PP + Q A PA +AG L FLR QFQ +R ++
Sbjct: 213 DPPEEAAESQDALPA----------------------DAGQDPLAFLRTQPQFQQMRQVI 250
Query: 294 QANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEG 338
Q NPQ+L P+LQ++G+ NP L++LI ++Q F+R++NEPV G
Sbjct: 251 QQNPQLLNPVLQQIGQTNPALLQLISQNQEAFVRMLNEPVGAASG 295
>gi|380815238|gb|AFE79493.1| UV excision repair protein RAD23 homolog A [Macaca mulatta]
gi|384948564|gb|AFI37887.1| UV excision repair protein RAD23 homolog A [Macaca mulatta]
Length = 362
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 124/369 (33%), Positives = 191/369 (51%), Gaps = 57/369 (15%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
++ E +FVVVM+TK+K ++ A+P ++++S PP PT+ P P
Sbjct: 65 RIDEKNFVVVMVTKTKAGQGTSAPPEASPTAAPESSTSFPPA---PTSGMSHPQPAARED 121
Query: 123 QSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILDM 182
+S E + AP +P P S S AAS LV GS E + +I+ M
Sbjct: 122 KSPSEES--------APTTSPESVSGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSM 173
Query: 183 GGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQ 242
G ++RE V+ ALRA+YNNP RAVEYL +GIP S + G+ ++
Sbjct: 174 G---YERERVVAALRASYNNPHRAVEYLLTGIP----------GSPEPEHGSVQESQVSE 220
Query: 243 QPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQP 302
QPA + AG L+FLR+ QFQ +R ++Q NP +L
Sbjct: 221 QPA------------------------TEAGENPLEFLRDQPQFQNMRQVIQQNPALLPA 256
Query: 303 MLQELGKQNPHLMRLIQEHQTDFLRLINEP------VEGGEGNVLGQLASAMPQA--VTV 354
+LQ+LG++NP L++ I HQ F++++NEP + EG V G + PQ + V
Sbjct: 257 LLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELADISDVEGEV-GAIGEEAPQMNYIQV 315
Query: 355 TPEEREAIE 363
TP+E+EAIE
Sbjct: 316 TPQEKEAIE 324
>gi|348565217|ref|XP_003468400.1| PREDICTED: UV excision repair protein RAD23 homolog A-like [Cavia
porcellus]
Length = 362
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 132/384 (34%), Positives = 193/384 (50%), Gaps = 87/384 (22%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P S Q LI+ GK+L D + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVSGQKLIYAGKILSDDVPIRDY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
++ E +FVVVM+TK K +G T+ APP + PT AP
Sbjct: 65 RIDEKNFVVVMVTKGK---AGQGTL-------------APPEIS----------PTAAPE 98
Query: 123 QSVP---ESAPPPAAPAPAPAPAPAPAPAPAPVSS------------VSDVYGQAASNLV 167
S P SAP + P+PA +P+ AP +S S AAS LV
Sbjct: 99 PSAPFQLTSAPGMSHPSPATRDDKSPSEESAPTASPESVSGSVPSSGSSGREEDAASTLV 158
Query: 168 AGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARAS 227
GS E + +I+ MG +DRE V+ ALRA+YNNP RAVEYL +GIP S
Sbjct: 159 TGSEYETMLTEIMSMG---YDRERVVAALRASYNNPHRAVEYLLTGIP----------GS 205
Query: 228 AGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQ 287
+ G+ ++QPA + AG L+FLR+ QFQ
Sbjct: 206 PEPEHGSIQESQASEQPA------------------------TEAGENPLEFLRDQPQFQ 241
Query: 288 ALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP------VEGGEGNVL 341
++R ++Q NP +L +LQ+LG++NP L++ I HQ F++++NEP V EG V
Sbjct: 242 SMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELADVSDVEGEV- 300
Query: 342 GQLASAMPQA--VTVTPEEREAIE 363
G + PQ + VTP+E+EAIE
Sbjct: 301 GAMGEDAPQMNYIQVTPQEKEAIE 324
>gi|217069976|gb|ACJ83348.1| unknown [Medicago truncatula]
Length = 159
Score = 163 bits (412), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 114/174 (65%), Positives = 125/174 (71%), Gaps = 20/174 (11%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKVFVKTLKGTHFEIEV P+D +S VKKNIETVQG DVYPA+QQMLIHQGKVLKD TTLE
Sbjct: 1 MKVFVKTLKGTHFEIEVTPQDTISAVKKNIETVQGVDVYPAAQQMLIHQGKVLKDGTTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKVAENSF+V+ML+KSK +S ST S AP + AP TS PT+T
Sbjct: 61 ENKVAENSFIVIMLSKSKPASGKGSTTSNAPP------AKAPQTSAAPTST--------- 105
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSV-----SDVYGQAASNLVAG 169
PP SV AP A PA AP+PAPAPAP+SS SDVYGQAASNLVAG
Sbjct: 106 PPVSVSPQAPAATAAPPASVAAPSPAPAPAPISSATATEGSDVYGQAASNLVAG 159
>gi|296233062|ref|XP_002807846.1| PREDICTED: UV excision repair protein RAD23 homolog A [Callithrix
jacchus]
Length = 363
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 133/376 (35%), Positives = 195/376 (51%), Gaps = 70/376 (18%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
++ E +FVVVM+TK+K +G T SA P A PT+ ++TS PAPT
Sbjct: 65 RIDEKNFVVVMVTKTK---AGQGT-SAPP--------EASPTAAPESSTSFLPAPTSGM- 111
Query: 123 QSVPESAPPPAA---PAPAPAPAPAPAPAPAPVSSVSDVYG----QAASNLVAGSNLEAT 175
S PPPAA +P+ AP +P S S AAS LV GS E
Sbjct: 112 -----SHPPPAAREDKSPSEESAPTTSPESVSGSVPSSGSSGREEDAASTLVTGSEYETM 166
Query: 176 VQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNP 235
+ +I+ MG ++RE V+ ALRA+YNNP RAVEYL +GIP S + G+
Sbjct: 167 LTEIMSMG---YERERVVAALRASYNNPHRAVEYLLTGIP----------GSPEPEHGSV 213
Query: 236 PAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQA 295
++QPA A AG L+FLR+ QFQ +R ++Q
Sbjct: 214 QESQVSEQPATEA-----------------------AGENPLEFLRDQPQFQNMRQVIQQ 250
Query: 296 NPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP------VEGGEGNVLGQLASAMP 349
NP +L +LQ+LG++NP L++ I HQ F++++NEP + E V G + P
Sbjct: 251 NPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELADISDVEAEV-GAIGEEAP 309
Query: 350 QA--VTVTPEEREAIE 363
Q + VTP+E+EAIE
Sbjct: 310 QMNYIQVTPQEKEAIE 325
>gi|397487604|ref|XP_003814882.1| PREDICTED: UV excision repair protein RAD23 homolog A isoform 1
[Pan paniscus]
Length = 363
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 125/369 (33%), Positives = 190/369 (51%), Gaps = 56/369 (15%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
++ E +FVVVM+TK+K + A+P ++++S PP PT+ P P
Sbjct: 65 RIDEKNFVVVMVTKTKAGQGTPAPPEASPTAAPESSTSFPPA---PTSGMSHPPPAARED 121
Query: 123 QSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILDM 182
+S E + AP +P P S S AAS LV GS E + +I+ M
Sbjct: 122 KSPSEES--------APTTSPESVSGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSM 173
Query: 183 GGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQ 242
G ++RE V+ ALRA+YNNP RAVEYL +GIP S + G+ ++
Sbjct: 174 G---YERERVVAALRASYNNPHRAVEYLLTGIP----------GSPEPEHGSVQESQVSE 220
Query: 243 QPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQP 302
QPA A AG L+FLR+ QFQ +R ++Q NP +L
Sbjct: 221 QPATEA-----------------------AGENPLEFLRDQPQFQNMRQVIQQNPALLPA 257
Query: 303 MLQELGKQNPHLMRLIQEHQTDFLRLINEP------VEGGEGNVLGQLASAMPQA--VTV 354
+LQ+LG++NP L++ I HQ F++++NEP + EG V G + PQ + V
Sbjct: 258 LLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELADISDVEGEV-GAIGEEAPQMNYIQV 316
Query: 355 TPEEREAIE 363
TP+E+EAIE
Sbjct: 317 TPQEKEAIE 325
>gi|383860341|ref|XP_003705649.1| PREDICTED: UV excision repair protein RAD23 homolog B-like
[Megachile rotundata]
Length = 365
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 113/334 (33%), Positives = 164/334 (49%), Gaps = 63/334 (18%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + +K L+ F +E+ P V D+K+ IET +G +PA Q LI+ GK+L D L
Sbjct: 1 MIITLKNLQQQTFTVEIDPSQTVKDLKQKIETQKG---FPAEHQKLIYAGKILTDDHPLA 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E + E F+VVM+TK K + + A+ + T + +TTS P P+
Sbjct: 58 EYNIDEKKFIVVMVTKLKTGNGHTA---------AEEDHTNTETKEESSTTSSVPEPSSN 108
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P SV ++ P + A + A A GQA S L+ G N V I+
Sbjct: 109 P--SVQGASNPVSTAQEQSAASTATECAG----------GQAESALLMGENYNTMVNNIM 156
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
DMG ++RE V +ALRA++NNP+RAVEYL +GIP Q P Q +
Sbjct: 157 DMG---YEREQVEQALRASFNNPDRAVEYLVTGIPAQLF------------EDLPEDQLE 201
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQIL 300
AQ+ + G L FLR QFQ +R ++Q NPQ+L
Sbjct: 202 AQEQF------------------------QDHGQHPLAFLRMQPQFQQMREVIQQNPQLL 237
Query: 301 QPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVE 334
MLQ++G+ NP L++LI ++Q F+R++NEPVE
Sbjct: 238 NAMLQQIGQTNPALLQLISQNQEAFVRMLNEPVE 271
>gi|327278100|ref|XP_003223800.1| PREDICTED: UV excision repair protein RAD23 homolog B-like [Anolis
carolinensis]
Length = 425
Score = 162 bits (410), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 133/407 (32%), Positives = 197/407 (48%), Gaps = 64/407 (15%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V +KTL+ F+I++ PE+ V +K+ IE+ +G D +P Q LI+ GK+L D T L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVGGQKLIYAGKILNDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E K+ E +FVVVM+TK K +++ A + + + TT+ + T
Sbjct: 61 EYKIDEKNFVVVMVTKPKAAAAPAPSPTTTQQSNDTTTTVSSSTIAAAAPKPAPVTAPAP 120
Query: 121 PPQSVPESAPP-PAAPAPAPAPAPAPAP---APAPVS----------------SVSDVYG 160
S P + PP PAA PAP +P A P+ S S+++
Sbjct: 121 ALVSTPVADPPTPAAVTCEPAPVSSPVEEKVAEKPIETPAATSTSTDSTTGDLSRSNLFE 180
Query: 161 QAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP----E 216
A S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP
Sbjct: 181 DATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRES 237
Query: 217 QTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGT 276
Q P AS G A A T+ S+ G
Sbjct: 238 QGMTDPPQAASTGASPSAVAAAAAAAVTTTTTTTT-----------------TSSTGGHP 280
Query: 277 LDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG 336
L+FLRN QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F++++NEPV+
Sbjct: 281 LEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQES 340
Query: 337 --------------------EGNVLGQLASAMPQAVTVTPEEREAIE 363
G V + S + VTP+E+EAIE
Sbjct: 341 GQGGGGSGGGGGGGGGGGGGGGGVAAEAGSRHMNYIQVTPQEKEAIE 387
>gi|345482492|ref|XP_001608155.2| PREDICTED: UV excision repair protein RAD23 homolog B-like isoform
1 [Nasonia vitripennis]
Length = 358
Score = 162 bits (409), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 125/371 (33%), Positives = 184/371 (49%), Gaps = 58/371 (15%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + +K L F +E+ V D+K IE +G +P+ Q LI+ GK+L D L
Sbjct: 1 MIITIKNLWQQTFTVEIDATKTVKDLKDKIEAQKG---FPSQHQKLIYAGKILTDEQPLT 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPT-V 119
E + E FVVVM++K K +S + + N +AP T++ PAP
Sbjct: 58 EYNIDEKKFVVVMVSKPKNEASTSDETQSGTDNTKSKEQTAP-------TSTPAPAPVQT 110
Query: 120 APPQSVPESAP---PPAAPAPAPAPAPAPAPA---PAPVSSVSDVYGQAASNLVAGSNLE 173
+ P V E+A P + P P AP P A P P S + ++A L+ G
Sbjct: 111 SVPAQVTEAASVQAPSSVPVPTTAPTRTPETATQQPTPTSVATSNPPESA--LLMGEEYN 168
Query: 174 ATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAG 233
A V I+DMG ++R+ V +ALRA++NNP+RAVEYL +GIP Q
Sbjct: 169 AMVNNIMDMG---YERDQVEQALRASFNNPDRAVEYLLTGIPAQLF-------------E 212
Query: 234 NPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMV 293
+PP + Q A PA +AG L FLR QFQ +R ++
Sbjct: 213 DPPEEAAESQDALPA----------------------DAGQDPLAFLRTQPQFQQMRQVI 250
Query: 294 QANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP-VEGGEGNVLGQLASAMPQAV 352
Q NPQ+L P+LQ++G+ NP L++LI ++Q F+R++NEP GG G G P +
Sbjct: 251 QQNPQLLNPVLQQIGQTNPALLQLISQNQEAFVRMLNEPVAPGGLGAGAGAGVPGGPGVI 310
Query: 353 TVTPEEREAIE 363
++P+++EAIE
Sbjct: 311 QISPQDKEAIE 321
>gi|256082442|ref|XP_002577465.1| uv excision repair protein rad23 [Schistosoma mansoni]
gi|360044631|emb|CCD82179.1| putative uv excision repair protein rad23 [Schistosoma mansoni]
Length = 341
Score = 162 bits (409), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 124/364 (34%), Positives = 175/364 (48%), Gaps = 64/364 (17%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV KTL F ++ + +D + DVKK IE GS+ + A Q LIH GKV++D +L+
Sbjct: 1 MKVTFKTLMQQTFVLDFQEDDLIGDVKKKIEAKWGSE-FDARTQKLIHSGKVMEDSKSLK 59
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ KV E+ FVVVM VS T A A + S P T+PTT ++P
Sbjct: 60 DYKVTESGFVVVM----SVSKPSKDTTKEASA----SVQSNPTGETKPTTDKKSPVT--- 108
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
A AP+ AP SS + G S+LV G N E V++++
Sbjct: 109 -----------EANEAPSITTAP---------SSATSTLGFGESSLVTGENFERVVKELM 148
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSG-IPEQTAVPPVARASAGGQAGNPPAQT 239
MG ++R VI+A+RA +NNP+RA EYL SG IP V ++
Sbjct: 149 SMG---FERSLVIQAMRAGFNNPDRAFEYLSSGNIPNVDIV----------DQSREREES 195
Query: 240 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQI 299
++ P P T P G ++GS L L QFQ +R +VQANP++
Sbjct: 196 ESVSPEGPGDTDTP----------GSESLGSEDPIAALASL---PQFQQMRALVQANPEL 242
Query: 300 LQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEER 359
L ++Q++G N L RLIQE++ FL IN PV G + S +T+T EER
Sbjct: 243 LPQLIQQIGNDNADLFRLIQENEQAFLEFINTPVTG-----TTRPGSQRQTVLTMTAEER 297
Query: 360 EAIE 363
A++
Sbjct: 298 AAVD 301
>gi|417410223|gb|JAA51588.1| Putative nucleotide excision repair factor nef2 rad23 component,
partial [Desmodus rotundus]
Length = 380
Score = 162 bits (409), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 129/370 (34%), Positives = 196/370 (52%), Gaps = 58/370 (15%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D + +
Sbjct: 22 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 81
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA-P 121
++ E +FVVVM+TK+K +S G S A +S+A P S+ TT+ PA ++ P
Sbjct: 82 RIDEKNFVVVMVTKAK-NSPGTSVPPEA-------SSTAAPESS--TTSPSAPASGMSHP 131
Query: 122 PQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILD 181
P ++ E P P +P P+ SS + AAS LV GS E + +I+
Sbjct: 132 PPTIREDKSPSEESVPTTSPESVSGSVPSSGSSGRE--EDAASTLVTGSEYETMLTEIMS 189
Query: 182 MGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQA 241
MG ++RE V+ ALRA+YNNP RAVEYL +GIP S + G+ +
Sbjct: 190 MG---YERERVVAALRASYNNPHRAVEYLLTGIP----------GSPEPEHGSVQESQVS 236
Query: 242 QQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQ 301
+QPA A AG L+FLR+ QFQ +R ++Q NP +L
Sbjct: 237 EQPATEA-----------------------AGENPLEFLRDQPQFQNMRQVIQQNPALLP 273
Query: 302 PMLQELGKQNPHLMRLIQEHQTDFLRLINEP------VEGGEGNVLGQLASAMPQA--VT 353
+LQ+LG++NP L++ I HQ F++++NEP + EG V G + PQ +
Sbjct: 274 ALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELADISDVEGEV-GAIGEEAPQMNYIQ 332
Query: 354 VTPEEREAIE 363
VTP+E+EAIE
Sbjct: 333 VTPQEKEAIE 342
>gi|410950560|ref|XP_003981972.1| PREDICTED: UV excision repair protein RAD23 homolog A isoform 1
[Felis catus]
Length = 362
Score = 161 bits (408), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 123/369 (33%), Positives = 190/369 (51%), Gaps = 57/369 (15%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
++ E +FVVVM+TK+K S + A+P ++++S PP P + P+PT
Sbjct: 65 RIDEKNFVVVMVTKAKTSPGTSVPPEASPTAAPESSTSFPPA---PASGMSQPSPTARED 121
Query: 123 QSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILDM 182
+S E + P +P P S S AAS LV GS E + +I+ M
Sbjct: 122 KSPSEES--------VPTTSPESVSGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSM 173
Query: 183 GGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQ 242
G ++RE V+ ALRA+YNNP RAVEYL +GIP S + G+ ++
Sbjct: 174 G---YERERVVAALRASYNNPHRAVEYLLTGIP----------GSPEPEHGSVQESQVSE 220
Query: 243 QPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQP 302
QPA + G L+FLR+ QFQ +R ++Q NP +L
Sbjct: 221 QPA------------------------TEGGENPLEFLRDQPQFQNMRQVIQQNPALLPA 256
Query: 303 MLQELGKQNPHLMRLIQEHQTDFLRLINEP------VEGGEGNVLGQLASAMPQA--VTV 354
+LQ+LG++NP L++ I HQ F++++NEP + EG V G + PQ + V
Sbjct: 257 LLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELADISDVEGEV-GAIGEEAPQMNYIQV 315
Query: 355 TPEEREAIE 363
TP+E+EAIE
Sbjct: 316 TPQEKEAIE 324
>gi|403302244|ref|XP_003941772.1| PREDICTED: UV excision repair protein RAD23 homolog A isoform 1
[Saimiri boliviensis boliviensis]
Length = 363
Score = 161 bits (407), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 131/376 (34%), Positives = 192/376 (51%), Gaps = 70/376 (18%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
++ E +FVVVM+TK+K SA P A PT+ ++TS PAPT
Sbjct: 65 RIDEKNFVVVMVTKTK----AVQGTSAPP--------EASPTAAPESSTSFPPAPTSGM- 111
Query: 123 QSVPESAPPPAA-----PAPAPAPAPAPAPAPAPVSSVSDVYGQ--AASNLVAGSNLEAT 175
S PPPAA P+ AP +P V S + AAS LV GS E
Sbjct: 112 -----SHPPPAAGEDKSPSEESAPTTSPESVSGSVPSSGSSGREEDAASTLVTGSEYETM 166
Query: 176 VQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNP 235
+ +I+ MG ++RE V+ ALRA+YNNP RAVEYL +GIP S + G+
Sbjct: 167 LTEIMSMG---YEREQVVAALRASYNNPHRAVEYLLTGIP----------GSPEPEHGSV 213
Query: 236 PAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQA 295
++QPA A AG L+FLR+ QFQ +R ++Q
Sbjct: 214 QESQVSEQPATEA-----------------------AGENPLEFLRDQPQFQNMRQVIQQ 250
Query: 296 NPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP------VEGGEGNVLGQLASAMP 349
NP +L +LQ+LG++NP L++ I HQ F++++NEP + E V G + P
Sbjct: 251 NPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELADISDVEAEV-GAIGEEAP 309
Query: 350 QA--VTVTPEEREAIE 363
Q + VTP+E+EAIE
Sbjct: 310 QMNYIQVTPQEKEAIE 325
>gi|213512547|ref|NP_001135284.1| UV excision repair protein RAD23 homolog A [Salmo salar]
gi|209156014|gb|ACI34239.1| UV excision repair protein RAD23 homolog A [Salmo salar]
Length = 387
Score = 161 bits (407), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 115/345 (33%), Positives = 179/345 (51%), Gaps = 52/345 (15%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++ +KTL+ F+I++ E+ V +K+ IE +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQITLKTLQQQTFKIDIDAEETVKTLKEKIENEKGKDGFPVAGQKLIYAGKILNDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSKVSS-----SGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTP 115
E K+ E +FVVVM+ K KV+ SGA+T + + ++A S P
Sbjct: 61 EYKIDEKNFVVVMVAKPKVAPAAAQPSGATTTTTSSTTVPTVPAAALSGSDNP------- 113
Query: 116 APTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEAT 175
P PE P P+ APA P + +++V +++ +A S LV G + E
Sbjct: 114 -----PEGGKPEDKPAEERPSNTSAPASTPTSSSGLLANV-NMFEEATSALVTGQSYENM 167
Query: 176 VQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE----QTAVPPVARASAGGQ 231
V +++ MG ++RE V+ +LRA++NNP+RAVEYL +GIP + PV GG
Sbjct: 168 VTEMMLMG---YEREQVVASLRASFNNPDRAVEYLLTGIPAGEEGHASADPVVPPVGGG- 223
Query: 232 AGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGT----LDFLRNSQQFQ 287
PA +G P + GS A A T L FL N QF
Sbjct: 224 --------------TPALNTGSMTTP--------ASTGSLASAATGANPLGFLVNQPQFL 261
Query: 288 ALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP 332
+R ++Q NP +L +LQ++G++NP L++ I HQ F++++NEP
Sbjct: 262 QMRQIIQQNPSLLPALLQQIGRENPQLLQQISSHQEQFIQMLNEP 306
>gi|327264110|ref|XP_003216859.1| PREDICTED: UV excision repair protein RAD23 homolog A-like [Anolis
carolinensis]
Length = 364
Score = 161 bits (407), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 131/371 (35%), Positives = 193/371 (52%), Gaps = 59/371 (15%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
V +KTL+ F+I ++PE+ V +K+ IE +G D +P S Q LI+ GK+L D ++E
Sbjct: 5 VTLKTLQQQTFKIRMEPEETVRVLKEKIEAEKGKDSFPVSGQKLIYAGKILSDDVPIKEY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
K+ E +FVVVM+TK+K + SGA AP T++S P S+ T T A + P
Sbjct: 65 KIDEKNFVVVMVTKNK-AGSGA----PAPLPSEATSTSEPAPSSGQTQLPTTAAASPPPA 119
Query: 123 QSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILDM 182
E PP +P + + P+ D AAS LV GS E + +I+ M
Sbjct: 120 APSGEEKPPEEPVTVSPQESIVSSIPPSGSMGRED---DAASTLVTGSEYETMLTEIMSM 176
Query: 183 GGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQ 242
G ++RE V+ ALRA+YNNP RAVEYL +GI
Sbjct: 177 G---YERERVVAALRASYNNPHRAVEYLLTGI---------------------------- 205
Query: 243 QPAAPAPTSGP--NANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQIL 300
P +P P GP + P + Q +P G L+FLR+ QFQ +R ++Q NP +L
Sbjct: 206 -PGSPEPERGPIQESQPQE---QPVPE-----GENPLEFLRDQPQFQNMRQVIQQNPALL 256
Query: 301 QPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVE--------GGEGNVLGQLASAMPQAV 352
+LQ+LG++NP L++ I +HQ F++++NEP+ GE +G+ A M +
Sbjct: 257 PALLQQLGQENPQLLQQISQHQEQFIQMLNEPLGEMADIADIEGEMGAIGEEAPQM-NYI 315
Query: 353 TVTPEEREAIE 363
VTP+E+EAIE
Sbjct: 316 QVTPQEKEAIE 326
>gi|395850797|ref|XP_003797962.1| PREDICTED: UV excision repair protein RAD23 homolog A [Otolemur
garnettii]
Length = 362
Score = 160 bits (406), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 130/377 (34%), Positives = 194/377 (51%), Gaps = 73/377 (19%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
++ E +FVVVM+TK+K A ++AP A PT+ T+T+ PAP
Sbjct: 65 RIDEKNFVVVMVTKAK-----AGQGTSAPLE-------ASPTAASETSTTFLPAPASGM- 111
Query: 123 QSVPESAPPPAA---PAPAPAPAPAPAPAPAPVSSVSDVYG----QAASNLVAGSNLEAT 175
S PPPAA +P+ P +P S S AAS LV GS E
Sbjct: 112 -----SHPPPAAREDKSPSEESVPTTSPESVSGSVPSSGSSGREEDAASTLVTGSEYETM 166
Query: 176 VQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNP 235
+ +I+ MG ++RE V+ ALRA+YNNP RAVEYL +GIP G+P
Sbjct: 167 LTEIMSMG---YEREQVVAALRASYNNPHRAVEYLLTGIP-----------------GSP 206
Query: 236 -PAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQ 294
P + Q+ S + P + AG L+FLR+ QFQ +R ++Q
Sbjct: 207 EPEHSSVQE-------SQVSEQP-----------ATEAGENPLEFLRDQPQFQNMRQVIQ 248
Query: 295 ANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP------VEGGEGNVLGQLASAM 348
NP +L +LQ+LG++NP L++ I HQ F++++NEP + EG V G +
Sbjct: 249 QNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELADISDVEGEV-GAIGEEA 307
Query: 349 PQA--VTVTPEEREAIE 363
PQ + VTP+E+EAIE
Sbjct: 308 PQMNYIQVTPQEKEAIE 324
>gi|242023622|ref|XP_002432231.1| uv excision repair protein rad23, putative [Pediculus humanus
corporis]
gi|212517628|gb|EEB19493.1| uv excision repair protein rad23, putative [Pediculus humanus
corporis]
Length = 344
Score = 160 bits (406), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 125/375 (33%), Positives = 181/375 (48%), Gaps = 80/375 (21%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + +K L+ F I++ V +K+ IE +G D YPA Q LI+ GK+L D T L
Sbjct: 1 MIITLKNLQQQTFTIDIDVNVTVKVLKEKIEAEKGKD-YPAVNQRLIYAGKILTDETPLS 59
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E K+ E F+VVM+TK K+ PA A ++ S P T QT T
Sbjct: 60 EYKIDEKKFIVVMVTKPKL----------PPATHAGSSDSTPTPGTGDGGEKQTSDTTSN 109
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P PA V+S + +GQA S L+ G +++ I+
Sbjct: 110 EP------------------------PASENVNSGAS-FGQAESALLMGDEYNQSLRNIM 144
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
DMG + +E V RALRA++NNP+RAVEYL +GIP + V + GG+
Sbjct: 145 DMG---YPKEQVERALRASFNNPDRAVEYLLNGIP--SDVDDTESSDVGGEE-------N 192
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQIL 300
P P T G +PL FLR+ QFQ +R ++QANPQ+L
Sbjct: 193 TLNPLTP-DTCGNEEDPLA-------------------FLRSQPQFQQMRQVIQANPQLL 232
Query: 301 QPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEG----------GEGNVLGQLASAM-- 348
+LQ++G+ NP L+++I ++Q F+R++NEP G G V G AS +
Sbjct: 233 NAVLQQIGQTNPALLQIISQNQDAFVRMLNEPGTGSGATPAPPAAGGNPVSGGAASNVFP 292
Query: 349 PQAVTVTPEEREAIE 363
P + VTP+++EAIE
Sbjct: 293 PSVIQVTPQDKEAIE 307
>gi|129277537|ref|NP_001076083.1| UV excision repair protein RAD23 homolog A [Bos taurus]
gi|182676545|sp|A3KMV2.1|RD23A_BOVIN RecName: Full=UV excision repair protein RAD23 homolog A
gi|126717366|gb|AAI33283.1| RAD23A protein [Bos taurus]
gi|296485920|tpg|DAA28035.1| TPA: UV excision repair protein RAD23 homolog A [Bos taurus]
Length = 362
Score = 160 bits (406), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 127/372 (34%), Positives = 192/372 (51%), Gaps = 63/372 (16%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA-- 120
++ E +FVVVM+TK+K +S G S S A PT+T ++TS AP
Sbjct: 65 RIDEKNFVVVMVTKAK-TSPGTS-----------VPSEASPTATPESSTSFPSAPASGMS 112
Query: 121 -PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQI 179
PP + E P AP +P P+ S + AAS LV GS E + +I
Sbjct: 113 HPPPTAREDKSPSEESAPTTSPESVSGSVPSSGSGGRE--EDAASTLVTGSEYETMLTEI 170
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 239
+ MG ++RE V+ ALRA+YNNP RAVEYL +GIP S + G+
Sbjct: 171 MSMG---YERERVVAALRASYNNPHRAVEYLLTGIP----------GSPEPEHGSVQESQ 217
Query: 240 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQI 299
++QP+ + AG L+FLR+ QFQ +R ++Q NP +
Sbjct: 218 VSEQPS------------------------TEAGENPLEFLRDQPQFQNMRQVIQQNPAL 253
Query: 300 LQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP------VEGGEGNVLGQLASAMPQA-- 351
L +LQ+LG++NP L++ I HQ F++++NEP + EG V G + PQ
Sbjct: 254 LPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELVDISDVEGEV-GAIGEEAPQMNY 312
Query: 352 VTVTPEEREAIE 363
+ VTP+E+EAIE
Sbjct: 313 IQVTPQEKEAIE 324
>gi|345482494|ref|XP_003424607.1| PREDICTED: UV excision repair protein RAD23 homolog B-like isoform
3 [Nasonia vitripennis]
Length = 367
Score = 160 bits (405), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 115/339 (33%), Positives = 168/339 (49%), Gaps = 57/339 (16%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + +K L F +E+ V D+K IE +G +P+ Q LI+ GK+L D L
Sbjct: 1 MIITIKNLWQQTFTVEIDATKTVKDLKDKIEAQKG---FPSQHQKLIYAGKILTDEQPLT 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPT-V 119
E + E FVVVM++K K +S + + N +AP T++ PAP
Sbjct: 58 EYNIDEKKFVVVMVSKPKNEASTSDETQSGTDNTKSKEQTAP-------TSTPAPAPVQT 110
Query: 120 APPQSVPESAP---PPAAPAPAPAPAPAPAPA---PAPVSSVSDVYGQAASNLVAGSNLE 173
+ P V E+A P + P P AP P A P P S + ++A L+ G
Sbjct: 111 SVPAQVTEAASVQAPSSVPVPTTAPTRTPETATQQPTPTSVATSNPPESA--LLMGEEYN 168
Query: 174 ATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAG 233
A V I+DMG ++R+ V +ALRA++NNP+RAVEYL +GIP Q
Sbjct: 169 AMVNNIMDMG---YERDQVEQALRASFNNPDRAVEYLLTGIPAQLF-------------E 212
Query: 234 NPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMV 293
+PP + Q A PA +AG L FLR QFQ +R ++
Sbjct: 213 DPPEEAAESQDALPA----------------------DAGQDPLAFLRTQPQFQQMRQVI 250
Query: 294 QANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP 332
Q NPQ+L P+LQ++G+ NP L++LI ++Q F+R++NEP
Sbjct: 251 QQNPQLLNPVLQQIGQTNPALLQLISQNQEAFVRMLNEP 289
>gi|73986456|ref|XP_542038.2| PREDICTED: UV excision repair protein RAD23 homolog A isoform 1
[Canis lupus familiaris]
Length = 362
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 123/369 (33%), Positives = 189/369 (51%), Gaps = 57/369 (15%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
++ E +FVVVM+TK+K S + A+P ++++S PP P + P PT
Sbjct: 65 RIDEKNFVVVMVTKAKTSPGTSVPPEASPTAAPESSTSFPPA---PASGMSHPPPTARED 121
Query: 123 QSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILDM 182
+S E + P +P P S S AAS LV GS E + +I+ M
Sbjct: 122 KSPSEES--------VPTTSPESVSGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSM 173
Query: 183 GGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQ 242
G ++RE V+ ALRA+YNNP RAVEYL +GIP S + G+ ++
Sbjct: 174 G---YERERVVAALRASYNNPHRAVEYLLTGIP----------GSPEPEHGSVQESQVSE 220
Query: 243 QPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQP 302
QPA + G L+FLR+ QFQ +R ++Q NP +L
Sbjct: 221 QPA------------------------TEGGENPLEFLRDQPQFQNMRQVIQQNPALLPA 256
Query: 303 MLQELGKQNPHLMRLIQEHQTDFLRLINEP------VEGGEGNVLGQLASAMPQA--VTV 354
+LQ+LG++NP L++ I HQ F++++NEP + EG V G + PQ + V
Sbjct: 257 LLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELADISDVEGEV-GAIGEEAPQMNYIQV 315
Query: 355 TPEEREAIE 363
TP+E+EAIE
Sbjct: 316 TPQEKEAIE 324
>gi|226470142|emb|CAX70352.1| UV excision repair protein RAD23 homolog B [Schistosoma japonicum]
gi|226489693|emb|CAX74997.1| UV excision repair protein RAD23 homolog B [Schistosoma japonicum]
gi|226489695|emb|CAX74998.1| UV excision repair protein RAD23 homolog B [Schistosoma japonicum]
gi|226489697|emb|CAX74999.1| UV excision repair protein RAD23 homolog B [Schistosoma japonicum]
Length = 350
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 126/368 (34%), Positives = 183/368 (49%), Gaps = 63/368 (17%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV KTLK F ++++ +D V DVKK IE +GS+ + AS Q LIH GKV++D +L+
Sbjct: 1 MKVTFKTLKQQTFVLDLQEDDLVGDVKKKIEAERGSE-FDASTQKLIHSGKVMEDSKSLK 59
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ KV ++ FVVVM + SK + G+++ AP N P +PTT + P V
Sbjct: 60 DYKVTDSGFVVVM-SVSKPAKEGSAS---APGN--------PAGEGRPTTDKKIPDVDVT 107
Query: 121 P-PQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQI 179
P S P++ P+ P + G S+LV G N E VQ++
Sbjct: 108 ESPSSKPDANSQPSLPTVTTTQSTTTN-----------TLGFGESSLVTGENFERVVQEL 156
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG-IPEQTAVPPVARASAGGQAGNPPAQ 238
+ MG +++ VIRA+RA +NNP+RA EYL SG IP V + P+Q
Sbjct: 157 VSMG---FEKPLVIRAMRAGFNNPDRAFEYLSSGNIPNIDIV-------------DQPSQ 200
Query: 239 TQAQQ---PAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQA 295
+ + P AP P G + GS L L QFQ +R +VQA
Sbjct: 201 REGSESVSPEAPGDADTP----------GSESAGSEDPIAALASL---PQFQQMRALVQA 247
Query: 296 NPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVT 355
NP++L ++Q++G N L RLIQE++ FL +N PV G + A +T+T
Sbjct: 248 NPELLPQLIQQIGNDNADLFRLIQENEQAFLEFLNTPVTG-----TTRPAGQRQTILTMT 302
Query: 356 PEEREAIE 363
EER A++
Sbjct: 303 AEERAAVD 310
>gi|432095937|gb|ELK26853.1| UV excision repair protein RAD23 like protein A [Myotis davidii]
Length = 363
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 129/370 (34%), Positives = 194/370 (52%), Gaps = 58/370 (15%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
++ E +FVVVM+TK+K +SSG S A + A +S++ P + + S TP PTV
Sbjct: 65 RIDEKNFVVVMVTKAK-NSSGTSVPPEASSTAAPESSTSFPLAP-ASGMSHTP-PTVRED 121
Query: 123 QSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILDM 182
+S E + P A+P P+ + AAS LV GS E + +I+ M
Sbjct: 122 RSPSEESVPTASPESVSGSVPSSGSSGRE--------EDAASTLVTGSEYETMLTEIMSM 173
Query: 183 GGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNP-PAQTQA 241
G ++RE V+ ALRA+YNNP RAVEYL +GIP G+P P
Sbjct: 174 G---YERERVVAALRASYNNPHRAVEYLLTGIP-----------------GSPEPEHGSV 213
Query: 242 QQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQ 301
Q+ TS P AG L+FLR+ QFQ +R ++Q NP +L
Sbjct: 214 QESQVSEQTS---TEP--------------AGENPLEFLRDQPQFQNMRQVIQQNPALLP 256
Query: 302 PMLQELGKQNPHLMRLIQEHQTDFLRLINEP------VEGGEGNVLGQLASAMPQA--VT 353
+LQ+LG++NP L++ I HQ F++++NEP + EG V G + PQ +
Sbjct: 257 ALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELADISDIEGEV-GAIGEEAPQMNYIQ 315
Query: 354 VTPEEREAIE 363
VTP+E+EAIE
Sbjct: 316 VTPQEKEAIE 325
>gi|344271527|ref|XP_003407589.1| PREDICTED: UV excision repair protein RAD23 homolog B-like
[Loxodonta africana]
Length = 613
Score = 159 bits (401), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 127/385 (32%), Positives = 185/385 (48%), Gaps = 80/385 (20%)
Query: 23 VSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSSS 82
V +K+ IE+ +G D +P + Q LI+ GK+L D T L+E K+ E +FVVVM+TK K
Sbjct: 227 VKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPK---- 282
Query: 83 GASTVSAAPANQAQTT--------------------------SSAPPTSTQP--TTTSQT 114
+ + APA Q+ ++ PTS P TT S
Sbjct: 283 --AVTTPAPATPQQSNPATTAAVSSSTAAAVAQAPAPAPALAPTSTPTSITPASTTASSE 340
Query: 115 PAPTVAPPQSVPESAP---PPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSN 171
PAP A Q P P P AA +P + + SS S+++ A S LV G +
Sbjct: 341 PAPASATQQEKPTEKPTETPVAA-------SPTSTDSTSGDSSRSNLFEDATSALVTGQS 393
Query: 172 LEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP----EQTAVPPVARAS 227
E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP Q V P AS
Sbjct: 394 YENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAVVDPPQAAS 450
Query: 228 AGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQ 287
G T +A +++G L+FLRN QFQ
Sbjct: 451 TG--------------------TPQSSAVAAAAATTTATTTTTSSGGHPLEFLRNQPQFQ 490
Query: 288 ALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG---------EG 338
+R ++Q NP +L +LQ++G++NP L++ I +HQ F++++NEPV+
Sbjct: 491 QMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQGGGGGGGS 550
Query: 339 NVLGQLASAMPQAVTVTPEEREAIE 363
+ + S + VTP+E+EAIE
Sbjct: 551 GGIAEAGSGHMNYIQVTPQEKEAIE 575
>gi|340716523|ref|XP_003396747.1| PREDICTED: UV excision repair protein RAD23 homolog B-like isoform
3 [Bombus terrestris]
Length = 337
Score = 158 bits (400), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 119/363 (32%), Positives = 176/363 (48%), Gaps = 63/363 (17%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + +K L+ F +E+ P V D+K+ IET +G +PA Q LI+ GK+L D L
Sbjct: 1 MIITLKNLQQQTFTVEIDPSQTVKDLKQKIETQKG---FPAKYQKLIYAGKILTDDHPLA 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E + E F+VVM+TK K + + + SS + QP++ PTV
Sbjct: 58 EYNIDEKKFIVVMVTKLKTGNGHTTEEEHTTNTDNKEESSTTSSVAQPSSN-----PTV- 111
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
+ A P A + A A V GQA S L+ G + V I+
Sbjct: 112 ------QGASNPTNTAQEQSEASTTAGC---------VGGQAESALLMGEDYNTMVNNIV 156
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
DMG ++RE V +ALRA++NNP+RAVEYL +GIP Q P Q +
Sbjct: 157 DMG---YEREQVEQALRASFNNPDRAVEYLLTGIPAQLF------------EDLPEDQLE 201
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQIL 300
AQ+ + G L FLR QFQ +R ++Q NPQ+L
Sbjct: 202 AQEQL------------------------QDHGQHPLAFLRMQPQFQQMRQVIQQNPQLL 237
Query: 301 QPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEERE 360
+LQ++G+ NP L++LI ++Q F+R++NEP +GG G +G + + VTP+++E
Sbjct: 238 NAVLQQIGQTNPALLQLISQNQEAFVRMLNEPGDGGLGAGIGAGSDVEASVIQVTPQDKE 297
Query: 361 AIE 363
AIE
Sbjct: 298 AIE 300
>gi|241713573|ref|XP_002412111.1| nucleotide excision repair factor NEF2, RAD23 component, putative
[Ixodes scapularis]
gi|215505188|gb|EEC14682.1| nucleotide excision repair factor NEF2, RAD23 component, putative
[Ixodes scapularis]
Length = 392
Score = 158 bits (400), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 137/382 (35%), Positives = 189/382 (49%), Gaps = 46/382 (12%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M V +KTL+ F++E+ P D V K+ IE +G + YPA Q LI+ GK+L D + +
Sbjct: 1 MIVTLKTLQQQSFKVEIDPSDTVKVFKEKIEVEKGKE-YPAQYQKLIYAGKILNDDSKMS 59
Query: 61 ENKVAENSFVVVMLTKSKVS--SSG---ASTVSAAPANQAQTTSSAPPTSTQPTTTSQTP 115
E + E FVV+M+TK K SSG AS V AAP + T + A S T + P
Sbjct: 60 EYDIEEKKFVVIMVTKPKCGTPSSGEGAASPVVAAPVDVPGTPAPAGAASGNAGAT-KGP 118
Query: 116 APTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEAT 175
+S + PP A A AP + S A S LV G + +
Sbjct: 119 EAAGETTRSPTTAQPPSVPAQQTTPAPAAAAAAPTATTESSGGIALAESALVMGEDYQRM 178
Query: 176 VQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTA-----VPPVARASAGG 230
V QI++MG +D+ V RALRA++NNP+RAVEYL +G E PP A S G
Sbjct: 179 VSQIMEMG---YDKPQVERALRASFNNPDRAVEYLLTGGNEGGNTEGGGAPPAAAQSPGR 235
Query: 231 QAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALR 290
+A PP A P T G +GS L FLR QFQ +R
Sbjct: 236 EAAAPPG-------ALPLSTEG---------------LGSGGAEDPLAFLRFQPQFQQMR 273
Query: 291 TMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVL------GQL 344
++Q NPQ+L +LQ++G+ NP L++LI ++Q F+R++NEP G+ G L
Sbjct: 274 QVIQQNPQLLNAVLQQIGQSNPQLLQLISQNQEAFVRMLNEPSPPPGGSGGRTPPAAGAL 333
Query: 345 ASAMPQAVT---VTPEEREAIE 363
S P V VTP+++EAIE
Sbjct: 334 GSGAPLEVNYGQVTPQDKEAIE 355
>gi|149641954|ref|XP_001513724.1| PREDICTED: UV excision repair protein RAD23 homolog A-like
[Ornithorhynchus anatinus]
Length = 360
Score = 158 bits (399), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 123/370 (33%), Positives = 180/370 (48%), Gaps = 61/370 (16%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++PE+ V +K+ IE +G D +P + Q LI+ GK+L D T + +
Sbjct: 5 ITLKTLQQQTFKIRMEPEETVKVLKEKIEAEKGQDAFPVAGQKLIYAGKILNDDTPIRDY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
K+ E +FVVVM+TK+K + APA++ ++ A P T P
Sbjct: 65 KIDEKNFVVVMVTKTKSGLGTSVPPETAPASEPSVSAPAASIVAMPLT-----------P 113
Query: 123 QSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILDM 182
S E P A P P P P S AAS LV GS E + +I+ M
Sbjct: 114 SSPKEER--PTADNPTSLPPPETVTGSVPSSGSIGREDDAASTLVTGSEYETMLTEIMSM 171
Query: 183 GGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQ 242
G +++E V+ ALRA++NNP RAVEYL GI
Sbjct: 172 G---YEQEQVVAALRASFNNPHRAVEYLLMGI---------------------------- 200
Query: 243 QPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQP 302
P +P P GP Q G L+FLR+ QFQ +R ++Q NP +L
Sbjct: 201 -PGSPEPEGGPIQE-----SQSNEQAAVEGGENPLEFLRDQPQFQNMRQVIQQNPALLPA 254
Query: 303 MLQELGKQNPHLMRLIQEHQTDFLRLINEP---------VEGGEGNVLGQLASAMPQAVT 353
+LQ+LG++NPHL++ I HQ F++++NEP +E GE +G + M +
Sbjct: 255 LLQQLGQENPHLLQQISLHQEQFIQMLNEPSGELGDMSDIE-GEIGAIGDEPTQM-SYIQ 312
Query: 354 VTPEEREAIE 363
VTP+E+EAIE
Sbjct: 313 VTPQEKEAIE 322
>gi|47205078|emb|CAF91196.1| unnamed protein product [Tetraodon nigroviridis]
Length = 320
Score = 158 bits (399), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 120/363 (33%), Positives = 172/363 (47%), Gaps = 81/363 (22%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++ +KTL+ +IE+ PE V +K+ IE +G D +P S Q LI+ GK+L+D T ++
Sbjct: 1 MQITLKTLQQQTIQIEIDPEQTVKALKEKIEAERGKDNFPVSGQKLIYAGKILQDDTPIK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E K+ E +FVVVM VS GA + P T SS P + SQ
Sbjct: 61 EYKIDERNFVVVM-----VSKVGAGNQTHRP-----TVSSRPLAFCSSSDGSQGL----- 105
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
A+S LV G+ EA + +I+
Sbjct: 106 ----------------------------------------DASSALVTGAEYEAMLTEII 125
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
MG ++RE V+ ALRA++NNP RAVEYL +GIP PV ++ PA
Sbjct: 126 SMG---YERERVVAALRASFNNPHRAVEYLLTGIPS----SPVQESNP---PAQAPAPLP 175
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQIL 300
+ PA+PA P A P G L FLRN QF +R +Q NP +L
Sbjct: 176 TESPASPAEGCFP-ACP---------------GENPLAFLRNQPQFLHMRQAIQQNPNLL 219
Query: 301 QPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEERE 360
+LQ+LG++NP L++ I +HQ F++++NEPV G + + VTP+E+E
Sbjct: 220 SALLQQLGQENPQLLQQINQHQERFIQMLNEPVGEGGELGAAGEEGSSVNYIQVTPQEKE 279
Query: 361 AIE 363
AIE
Sbjct: 280 AIE 282
>gi|431898018|gb|ELK06725.1| UV excision repair protein RAD23 like protein A [Pteropus alecto]
Length = 363
Score = 157 bits (398), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 128/375 (34%), Positives = 190/375 (50%), Gaps = 68/375 (18%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++ ++ V +K+ IE +G D +P + Q LI+ GK+L D + +
Sbjct: 5 ITLKTLQQQTFKIRMELDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
++ E +FVVVM+TK+K S S P A PT+ ++TS +PAP
Sbjct: 65 RIDEKNFVVVMVTKAKTSPG----TSVPP--------EASPTAAPESSTSFSPAPASGMS 112
Query: 123 QSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYG------QAASNLVAGSNLEATV 176
S PP A +P+ P +P VS G AAS LV GS E +
Sbjct: 113 HS-----PPTAREDKSPSEESVPTTSPESVSGSVPSSGSSGREEDAASTLVTGSEYETML 167
Query: 177 QQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPP 236
+I+ MG ++RE V+ ALRA+YNNP RAVEYL +GIP S + G+
Sbjct: 168 TEIMSMG---YERERVVAALRASYNNPHRAVEYLLTGIP----------GSPEPEHGSVQ 214
Query: 237 AQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQAN 296
++QPA A AG L+FLR+ QFQ +R ++Q N
Sbjct: 215 ESQVSEQPATEA-----------------------AGENPLEFLRDQPQFQNMRQVIQQN 251
Query: 297 PQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP------VEGGEGNVLGQLASAMPQ 350
P +L +LQ+LG++NP L++ I HQ F++++NEP + EG V G + PQ
Sbjct: 252 PALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELADISDVEGEV-GAIGEEAPQ 310
Query: 351 A--VTVTPEEREAIE 363
+ VTP+E+EAIE
Sbjct: 311 MNYIQVTPQEKEAIE 325
>gi|307189318|gb|EFN73749.1| UV excision repair protein RAD23-like protein B [Camponotus
floridanus]
Length = 363
Score = 157 bits (397), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 114/346 (32%), Positives = 168/346 (48%), Gaps = 82/346 (23%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + +K L+ F IE+ V D+K+ IET +G +PA Q LI+ GK+L D L
Sbjct: 1 MIITLKNLQQQTFTIEIDSSQTVKDLKEKIETQKG---FPAEHQKLIYAGKILADEQPLT 57
Query: 61 ENKVAENSFVVVMLTKSKVSS---SGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAP 117
E + E F+VVM+TK K + + + + N+ ++TSSA +TQP++ P
Sbjct: 58 EYNIDEKKFIVVMVTKPKAGATPKTSEEQRAESTDNKEESTSSA---TTQPSSN-----P 109
Query: 118 TVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQ 177
TV Q ++A + P PA GQA S L+ G + V
Sbjct: 110 TV---QETLQAASNVQEQSAVPTPAA----------------GQAESALLMGEDYNTMVN 150
Query: 178 QILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQT-----AVPPVARASAGGQA 232
I+DMG ++RE V++ALRA++NNP+RAVEYL +GIP Q PP A+ Q+
Sbjct: 151 NIMDMG---YEREQVVQALRASFNNPDRAVEYLLTGIPAQLFEDPPEDPPEAQEQLQDQS 207
Query: 233 GNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTM 292
+P L FLR QFQ +R +
Sbjct: 208 QDP-----------------------------------------LAFLRMQPQFQQMRQV 226
Query: 293 VQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEG 338
+Q NPQ+L +LQ++G NP L++LI ++Q F+R++NEPVE G
Sbjct: 227 IQQNPQLLNNLLQQIGSTNPALLQLISQNQEAFVRMLNEPVEPATG 272
>gi|426228902|ref|XP_004008534.1| PREDICTED: UV excision repair protein RAD23 homolog A isoform 1
[Ovis aries]
Length = 365
Score = 157 bits (396), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 121/369 (32%), Positives = 191/369 (51%), Gaps = 54/369 (14%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
++ E +FVVVM+TK+K S + A+P ++++S P + P + P PT
Sbjct: 65 RIDEKNFVVVMVTKAKTSPGTSVPSEASPTATPESSTSFP---SAPASGMSHPPPTARED 121
Query: 123 QSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILDM 182
+S E +AP +P P+ DV AA + V GS E + +I+ M
Sbjct: 122 KSPSEE----SAPTTSPESVSGSVPSSGSSGREEDV-AFAAPSTVTGSEYETMLTEIMSM 176
Query: 183 GGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQ 242
G ++RE V+ ALRA+YNNP RAVEYL +GIP S + G+ ++
Sbjct: 177 G---YERERVVAALRASYNNPHRAVEYLLTGIP----------GSPEPEHGSVQESQVSE 223
Query: 243 QPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQP 302
QP+ + AG L+FLR+ QFQ +R ++Q NP +L
Sbjct: 224 QPS------------------------TEAGENPLEFLRDQPQFQNMRQVIQQNPALLPA 259
Query: 303 MLQELGKQNPHLMRLIQEHQTDFLRLINEP------VEGGEGNVLGQLASAMPQA--VTV 354
+LQ+LG++NP L++ I HQ F++++NEP + EG V G + PQ + V
Sbjct: 260 LLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELVDISDVEGEV-GAIGEEAPQMNYIQV 318
Query: 355 TPEEREAIE 363
TP+E+EAIE
Sbjct: 319 TPQEKEAIE 327
>gi|291223551|ref|XP_002731773.1| PREDICTED: protein RAD23 repair 23 (2L942)-like [Saccoglossus
kowalevskii]
Length = 601
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 113/342 (33%), Positives = 179/342 (52%), Gaps = 27/342 (7%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + +KTL+ F++E++P V D+K +E V+G D +PA+ Q LI+ G++L D +
Sbjct: 1 MLITLKTLQQQTFKVEIEPTKTVKDLKAKVEEVRGKDGFPAAGQKLIYAGRILADDKLIS 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ ++E +FVVVM+TK K + STV + PA +AP +QP +
Sbjct: 61 DYNMSEENFVVVMVTKPKAAPKTESTVESKPA-------TAP---SQPAEKPKEEKKEET 110
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
+ + + P +A A A A ++S A S L+ G+ E V +++
Sbjct: 111 KEEKIDDKPPTESASASTETAAGTTTTASTSLASTLS---AAESTLLTGAAYENVVAELM 167
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
+MG ++R+ V+RALRAA+NNP+RAV+YL SGIPE + + + PA +
Sbjct: 168 NMG---YERDPVVRALRAAFNNPDRAVDYLLSGIPE-SVLAEAEAPAPAAAEQPEPAAAR 223
Query: 241 AQQPAAPAPTSGP---------NANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRT 291
+ PA PA T G P G +G + L FLR QFQ +R
Sbjct: 224 TESPATPA-TGGSTTTIAATTPATTPATTAASGTSPLGGQSEEDPLAFLREQPQFQQMRQ 282
Query: 292 MVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPV 333
++Q NP +L +LQ+LG+ NP L++LI +HQ F++++N PV
Sbjct: 283 IIQQNPSLLPALLQQLGQSNPQLLQLINQHQEQFIQMLNNPV 324
>gi|61557236|ref|NP_001013208.1| UV excision repair protein RAD23 homolog A [Rattus norvegicus]
gi|54038637|gb|AAH84695.1| RAD23 homolog A (S. cerevisiae) [Rattus norvegicus]
Length = 351
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 127/397 (31%), Positives = 185/397 (46%), Gaps = 113/397 (28%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D ++E
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDIPIKEY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
+ E +FVVVM+TK+K T APP
Sbjct: 65 HIDEKNFVVVMVTKAKAGQG-----------------------------------TPAPP 89
Query: 123 QSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYG---------------------- 160
++ P +AP P+ P P PAPA + P S+ D
Sbjct: 90 EASPTAAPEPSTPFP---PAPASGMSHPPPSNREDKSSSEESATTTSPESISGSVPSSGS 146
Query: 161 -----QAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 215
AAS LV GS E + +I+ MG ++RE V+ ALRA+YNNP RAVEYL +GIP
Sbjct: 147 SGREEDAASTLVTGSEYETMLTEIMSMG---YERERVVAALRASYNNPHRAVEYLLTGIP 203
Query: 216 EQTAVPPVARASAGGQAGNP-PAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGA 274
G+P P Q+ AP + AG
Sbjct: 204 -----------------GSPEPEHGSVQESQAPE------------------QPATEAGE 228
Query: 275 GTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP-- 332
L+FLR+ QFQ +R ++Q NP +L +LQ+LG++NP L++ I HQ F++++NEP
Sbjct: 229 NPLEFLRDQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPG 288
Query: 333 ----VEGGEGNVLGQLASAMPQA--VTVTPEEREAIE 363
+ EG V G L PQ + VTP+E+EAIE
Sbjct: 289 ELADISDVEGEV-GALGEEAPQMNYIQVTPQEKEAIE 324
>gi|307211720|gb|EFN87721.1| UV excision repair protein RAD23-like protein A [Harpegnathos
saltator]
Length = 357
Score = 156 bits (394), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 113/339 (33%), Positives = 163/339 (48%), Gaps = 75/339 (22%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + +K L+ F IE+ V D+K+ IET +G PA QQ LI+ GK+L D L
Sbjct: 1 MIITLKNLQQQTFTIEIDSSQTVKDLKQKIETQKG---LPAEQQKLIYAGKILADEQPLT 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E + E F+VVM+TK K S++ ++ ++ +T ST + +P PTV
Sbjct: 58 EYNIDEKKFIVVMVTKPKTSATPKTS------DEQRTEGDNKEESTSSSVAQPSPNPTV- 110
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
Q +A A PA GQA S L+ G + V+ I+
Sbjct: 111 --QDTSRAASTVQEQIAAAVPAAG--------------CGQAESALLMGEDYNTMVKNIM 154
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPA--- 237
DMG ++RE V++ALRA++NNP+RAVEYL +GIP Q P +PP
Sbjct: 155 DMG---YEREQVVQALRASFNNPDRAVEYLLTGIPAQLFEDP---------PEDPPEAQE 202
Query: 238 --QTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQA 295
Q Q+Q P A FLR QFQ +R ++Q
Sbjct: 203 QLQDQSQDPLA--------------------------------FLRMQPQFQQMRQVIQQ 230
Query: 296 NPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVE 334
NPQ+L +LQ++G NP L++LI ++Q F+R++NEPVE
Sbjct: 231 NPQLLNNLLQQIGSTNPALLQLISQNQEAFVRMLNEPVE 269
>gi|351711552|gb|EHB14471.1| UV excision repair protein RAD23-like protein A [Heterocephalus
glaber]
Length = 363
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 129/384 (33%), Positives = 191/384 (49%), Gaps = 86/384 (22%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
++ E +FVVVM+TK+K +G ST+ APP + PT AP
Sbjct: 65 RIDEKNFVVVMVTKAK---AGQSTL-------------APPEVS----------PTAAPE 98
Query: 123 QSVPESAPPPAA---PAPAPAPAPAPAPAPAPVSSVSDVYG------------QAASNLV 167
S P P + P PA +P+ A +S V G AAS LV
Sbjct: 99 PSTPFQLSPASGMSHPPPATREDKSPSQESATTTSPESVLGSVPSSGSSGREEDAASTLV 158
Query: 168 AGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARAS 227
GS E + +I+ MG ++RE VI ALRA+YNNP RAVEYL +GIP +
Sbjct: 159 TGSEYETMLMEIMSMG---YERERVIAALRASYNNPHRAVEYLLTGIP----------GN 205
Query: 228 AGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQ 287
+ G+ ++QPA A AG L+FLR+ QFQ
Sbjct: 206 PEPEHGSIQESQVSEQPATEA-----------------------AGENPLEFLRDQPQFQ 242
Query: 288 ALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP------VEGGEGNVL 341
+R ++Q NP +L +LQ+LG++NP L++ I HQ F++++NEP + EG V
Sbjct: 243 NMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELADISDVEGEV- 301
Query: 342 GQLASAMPQA--VTVTPEEREAIE 363
G + PQ + VTP+E+EAIE
Sbjct: 302 GAIGEDAPQMNYIQVTPQEKEAIE 325
>gi|51230604|ref|NP_001003739.1| UV excision repair protein RAD23 homolog A [Danio rerio]
gi|50925991|gb|AAH79526.1| RAD23 homolog A (S. cerevisiae) [Danio rerio]
gi|182889188|gb|AAI64761.1| Rad23a protein [Danio rerio]
Length = 362
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 128/376 (34%), Positives = 195/376 (51%), Gaps = 65/376 (17%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++ +KTL+ +I++ E V +K+ IE +G D +P + Q LI+ GK+L+D T ++
Sbjct: 1 MQITLKTLQQQTIQIDIDDEQTVKALKEKIEAEKGRDSFPVAGQKLIYAGKILQDDTPIK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E K+ E +FVVVM++K+K S G S + P+ +SS+ +S P +
Sbjct: 61 EYKIDEKNFVVVMVSKTK--SPGTSAAPSEPSRSMAASSSSSSSSPPPPPPPAPAPAAIP 118
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQ---AASNLVAGSNLEATVQ 177
P PPA +PA +P +DV G+ A+S LV G +A +
Sbjct: 119 FTDECPRD-DPPATVSPASSP-----------DGGTDVVGEGEDASSTLVTGQEYDAMLT 166
Query: 178 QILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPA 237
I+ MG ++R+ V+ AL+A+YNNP RAVEYL +GIP VP Q NP
Sbjct: 167 NIMSMG---YERDKVVAALKASYNNPHRAVEYLLNGIP---TVPV--------QETNPAP 212
Query: 238 QTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANP 297
AQ P PT G N L+FLR+ QFQ++R ++Q NP
Sbjct: 213 ---AQLPTDTQPTEGENP---------------------LEFLRSQPQFQSMRQVIQQNP 248
Query: 298 QILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNV--------LGQLAS-AM 348
+L +LQ+LG++NP L++ I +HQ F++++N PV GEG + LG + A
Sbjct: 249 SLLPALLQQLGQENPELLQQISQHQELFIQMLNAPVGEGEGELGEGGEFADLGAIGDEAA 308
Query: 349 PQA-VTVTPEEREAIE 363
P + + VT +E+EAIE
Sbjct: 309 PGSFIQVTQQEKEAIE 324
>gi|83415124|ref|NP_001032776.1| uncharacterized protein LOC562839 [Danio rerio]
gi|79154071|gb|AAI08001.1| Zgc:123349 [Danio rerio]
Length = 404
Score = 155 bits (392), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 135/396 (34%), Positives = 199/396 (50%), Gaps = 64/396 (16%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+ + +KTL+ F++++ E V +K+ IE +G D +PA Q LI+ GK+L D L+
Sbjct: 2 LTITLKTLQQQTFKVQIDEELTVKALKEKIEEEKGKDGFPAVGQKLIYAGKILNDDIPLK 61
Query: 61 ENKVAENSFVVVMLTKSKVSSSGAST----VSAAPANQAQTTSSAPPTSTQPTTTSQTPA 116
E K+ E +FVVVM+TK K ++S + VS P +Q TT APP ++ T+ PA
Sbjct: 62 EYKIDEKNFVVVMVTKPKSAASPQTPTPVPVSETPTHQP-TTPVAPPNASIVPETTPDPA 120
Query: 117 PTVAPPQSV-----PESAPP-----------PAAPAPAPA--------PAPAPAPAPAPV 152
P V P SV P +APP P + PAPA A A + A +
Sbjct: 121 P-VEPAASVEPIDPPVTAPPAASEDTVETTEPVSATPAPAVEEEIQGQEEQAIAQSEASL 179
Query: 153 SSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYS 212
+ + AAS LV G E V +I+ MG ++RE VI ALRA++NNP+RAVEYL +
Sbjct: 180 TDELSLLEAAASILVTGQAYENLVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLT 236
Query: 213 GIPEQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNA 272
GIP ++ PP Q+ P P S P G+ +
Sbjct: 237 GIPAESEQPP-------------------QEVVRPTPVSNPTPPAPQRAQPPPAAAGAES 277
Query: 273 -----GAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLR 327
A L+FLR+ QFQ +R ++Q NP +L +LQ+LG+ NP L++ I +HQ F++
Sbjct: 278 GGAQASANPLEFLRHQPQFQQMRQIIQQNPSLLPALLQQLGRDNPQLLQQITQHQERFVQ 337
Query: 328 LINEPVEGGEGNVLGQLASAMPQAVTVTPEEREAIE 363
++N A+ + VTP+E+EAIE
Sbjct: 338 MLN-------EPEAEAPAAPQTNYIQVTPQEKEAIE 366
>gi|344282700|ref|XP_003413111.1| PREDICTED: UV excision repair protein RAD23 homolog A [Loxodonta
africana]
Length = 363
Score = 155 bits (392), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 124/376 (32%), Positives = 188/376 (50%), Gaps = 70/376 (18%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
++ E +FVVVM+TK+K ++ +P ++++S PP P + P PT
Sbjct: 65 RIDEKNFVVVMVTKAKAGPGTSAPPETSPTAAPESSTSFPPA---PASGMSHPPPTAKED 121
Query: 123 QSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILDM 182
+S E + P +P P S S AAS LV GS E + +I+ M
Sbjct: 122 KSPSEES--------VPTMSPESVSGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSM 173
Query: 183 GGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNP-PAQTQA 241
G ++RE V+ ALRA+YNNP RAVEYL +GIP G+P P +
Sbjct: 174 G---YERERVVAALRASYNNPHRAVEYLLTGIP-----------------GSPEPEHSSV 213
Query: 242 Q------QPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQA 295
Q QPA A G L+FLR+ QFQ +R ++Q
Sbjct: 214 QESQVSEQPATEA-----------------------VGDNPLEFLRDQPQFQNMRQVIQQ 250
Query: 296 NPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP------VEGGEGNVLGQLASAMP 349
NP +L +LQ+LG++NP L++ I HQ F++++NEP + EG V G + P
Sbjct: 251 NPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELADISDVEGEV-GAIGEEAP 309
Query: 350 QA--VTVTPEEREAIE 363
Q + VTP+E+EAIE
Sbjct: 310 QMNYIQVTPQEKEAIE 325
>gi|1044897|emb|CAA63145.1| MHR23A [Mus musculus]
gi|1587277|prf||2206377A MHR23A gene
Length = 363
Score = 155 bits (391), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 127/369 (34%), Positives = 187/369 (50%), Gaps = 56/369 (15%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
+ E +FVVVM+TK+K + G S AP + T P T P S P PP
Sbjct: 65 HIDEKNFVVVMVTKAK-AGQGIS----APPEASPTAVPEPSTPFPPVLASGMSHP---PP 116
Query: 123 QSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILDM 182
S + +P + +P P S S AAS LV GS E + +I+ M
Sbjct: 117 TSREDKSP---SEESTTTTSPESISGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSM 173
Query: 183 GGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQ 242
G ++RE V+ ALRA+YNNP RAVEYL +GIP S + G+ +A+
Sbjct: 174 G---YERERVVAALRASYNNPHRAVEYLLTGIP----------GSPEPEHGSVQESQRAE 220
Query: 243 QPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQP 302
QPA A AG L+FLR+ QFQ +R ++Q NP +L
Sbjct: 221 QPATEA-----------------------AGENPLEFLRDQPQFQNMRQVIQQNPALLPA 257
Query: 303 MLQELGKQNPHLMRLIQEHQTDFLRLINEP------VEGGEGNVLGQLASAMPQA--VTV 354
+LQ+LG++NP L++ I HQ F++++NEP + EG V G + PQ + V
Sbjct: 258 LLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELADISDVEGEV-GAIGEEAPQMNYIQV 316
Query: 355 TPEEREAIE 363
TP+E+EAIE
Sbjct: 317 TPQEKEAIE 325
>gi|255636258|gb|ACU18469.1| unknown [Glycine max]
Length = 160
Score = 154 bits (390), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 74/102 (72%), Positives = 87/102 (85%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKVFVKTLKGTHFEIEV P+D VS+VKKNIETVQG+DVYPA+QQMLIHQGKVL+D +TLE
Sbjct: 1 MKVFVKTLKGTHFEIEVTPQDTVSEVKKNIETVQGADVYPAAQQMLIHQGKVLRDASTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAP 102
ENKV EN+F+V+ML+KSK S ST S AP+ +A TS+ P
Sbjct: 61 ENKVVENTFIVIMLSKSKSPSGEGSTTSTAPSTKAPQTSTVP 102
>gi|149037839|gb|EDL92199.1| RAD23a homolog (S. cerevisiae) [Rattus norvegicus]
Length = 363
Score = 154 bits (390), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 127/396 (32%), Positives = 185/396 (46%), Gaps = 110/396 (27%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D ++E
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDIPIKEY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
+ E +FVVVM+TK+K T APP
Sbjct: 65 HIDEKNFVVVMVTKAKAGQG-----------------------------------TPAPP 89
Query: 123 QSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYG---------------------- 160
++ P +AP P+ P P PAPA + P S+ D
Sbjct: 90 EASPTAAPEPSTPFP---PAPASGMSHPPPSNREDKSSSEESATTTSPESISGSVPSSGS 146
Query: 161 -----QAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 215
AAS LV GS E + +I+ MG ++RE V+ ALRA+YNNP RAVEYL +GIP
Sbjct: 147 SGREEDAASTLVTGSEYETMLTEIMSMG---YERERVVAALRASYNNPHRAVEYLLTGIP 203
Query: 216 EQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAG 275
S + G+ +QPA A AG
Sbjct: 204 ----------GSPEPEHGSVQESQAPEQPATEA-----------------------AGEN 230
Query: 276 TLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP--- 332
L+FLR+ QFQ +R ++Q NP +L +LQ+LG++NP L++ I HQ F++++NEP
Sbjct: 231 PLEFLRDQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGE 290
Query: 333 ---VEGGEGNVLGQLASAMPQA--VTVTPEEREAIE 363
+ EG V G L PQ + VTP+E+EAIE
Sbjct: 291 LADISDVEGEV-GALGEEAPQMNYIQVTPQEKEAIE 325
>gi|335282758|ref|XP_003123386.2| PREDICTED: UV excision repair protein RAD23 homolog A-like [Sus
scrofa]
Length = 363
Score = 154 bits (389), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 125/375 (33%), Positives = 190/375 (50%), Gaps = 68/375 (18%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
++ E +FVVVM+TK+K S + A+P ++++S P PA ++ P
Sbjct: 65 RIDEKNFVVVMVTKAKTSPGTSVPPEASPTAAPESSTSFP----------LAPASGMSHP 114
Query: 123 QSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYG------QAASNLVAGSNLEATV 176
P PA +P+ P +P VS G AAS LV GS E +
Sbjct: 115 -------PSPAREDKSPSEESVPTTSPESVSGSVPSSGSSGREEDAASTLVTGSEYETML 167
Query: 177 QQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPP 236
+I MG ++RE V+ ALRA+YNNP RAVEYL +GIP S + G+
Sbjct: 168 TEITSMG---YERERVVAALRASYNNPHRAVEYLLTGIP----------GSPEPEHGSVQ 214
Query: 237 AQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQAN 296
++QP PT NP L+FLR+ QFQ +R ++Q N
Sbjct: 215 ESQVSEQP----PTEAAGENP-------------------LEFLRDQPQFQNMRQVIQQN 251
Query: 297 PQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP------VEGGEGNVLGQLASAMPQ 350
P +L +LQ+LG++NP L++ I HQ F++++NEP + EG V G + PQ
Sbjct: 252 PALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELADISDVEGEV-GAIGEEAPQ 310
Query: 351 A--VTVTPEEREAIE 363
+ VTP+E+EAIE
Sbjct: 311 MNYIQVTPQEKEAIE 325
>gi|340374755|ref|XP_003385903.1| PREDICTED: UV excision repair protein RAD23 homolog B-like
[Amphimedon queenslandica]
Length = 409
Score = 154 bits (388), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 132/376 (35%), Positives = 198/376 (52%), Gaps = 35/376 (9%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + VKTL+ F+IE++ V D+KK IE QG + +PA+ Q LI+ GK+L D L
Sbjct: 1 MIITVKTLQQKTFKIEIEESASVLDLKKAIEANQG-EAFPAAGQKLIYSGKILNDSQPLS 59
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ + E++FVVVM++K K + + + + +T S + QP++++ P T A
Sbjct: 60 DYSIQESNFVVVMVSKIKPAPAPTPKPQETSSTSSSSTPSTSGATPQPSSSATAPTTTSA 119
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P + + A + +S S + QA S LV G++ E TV ++
Sbjct: 120 PSGTTGTES----------TDGGAGGGQTSSTASSSSEFDQALSTLVTGTDYERTVNDMV 169
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP----EQTAVPPVARASAGGQ----A 232
MG + R V+RAL+A+YNNP RA+EYL P E+ A P + AGGQ
Sbjct: 170 GMG---FMRNDVVRALQASYNNPTRAMEYLCGERPMPTLEEEAEPQPRGSGAGGQQVPLT 226
Query: 233 GNPPAQTQAQQPAAPAPTSGP-NANPLDLFPQG-LPNMGSNAGAGTLDFLRNSQQFQALR 290
+PP Q+PA + S P +A P PQG L G + + L L QFQALR
Sbjct: 227 SSPPQAPPTQRPAGQSQQSTPPSAAPRP--PQGGLSAGGGQSASNVLQGLSQLPQFQALR 284
Query: 291 TMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVE-GGEGNVL--GQLASA 347
VQ NP +L +LQE+G+ NP L++LI ++Q +F+ L+N+P + G G L G +
Sbjct: 285 AAVQQNPGLLPSLLQEIGQHNPELLQLINQNQQEFVDLLNQPPQPIGSGQELPPGTV--- 341
Query: 348 MPQAVTVTPEEREAIE 363
++ VT EEREAI+
Sbjct: 342 ---SIQVTQEEREAID 354
>gi|340716519|ref|XP_003396745.1| PREDICTED: UV excision repair protein RAD23 homolog B-like isoform
1 [Bombus terrestris]
Length = 364
Score = 154 bits (388), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 110/334 (32%), Positives = 160/334 (47%), Gaps = 63/334 (18%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + +K L+ F +E+ P V D+K+ IET +G +PA Q LI+ GK+L D L
Sbjct: 1 MIITLKNLQQQTFTVEIDPSQTVKDLKQKIETQKG---FPAKYQKLIYAGKILTDDHPLA 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E + E F+VVM+TK K + + + SS + QP++ PTV
Sbjct: 58 EYNIDEKKFIVVMVTKLKTGNGHTTEEEHTTNTDNKEESSTTSSVAQPSSN-----PTV- 111
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
+ A P A + A A V GQA S L+ G + V I+
Sbjct: 112 ------QGASNPTNTAQEQSEASTTAGC---------VGGQAESALLMGEDYNTMVNNIV 156
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
DMG ++RE V +ALRA++NNP+RAVEYL +GIP Q P Q +
Sbjct: 157 DMG---YEREQVEQALRASFNNPDRAVEYLLTGIPAQLF------------EDLPEDQLE 201
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQIL 300
AQ+ + G L FLR QFQ +R ++Q NPQ+L
Sbjct: 202 AQEQL------------------------QDHGQHPLAFLRMQPQFQQMRQVIQQNPQLL 237
Query: 301 QPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVE 334
+LQ++G+ NP L++LI ++Q F+R++NEPVE
Sbjct: 238 NAVLQQIGQTNPALLQLISQNQEAFVRMLNEPVE 271
>gi|164665690|gb|ABY66299.1| DNA repair protein RAD23 [Brassica napus]
Length = 327
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 119/362 (32%), Positives = 169/362 (46%), Gaps = 113/362 (31%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+FVKTLKG FEI+V ED V+DVKKNIETV G A++QMLIH+GKVL+D TT+E
Sbjct: 1 MKIFVKTLKGDRFEIQVNLEDSVADVKKNIETVMG---VTAAEQMLIHKGKVLEDETTME 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
N+V+E S + VM K + + S+ S P QA A P+ST T
Sbjct: 58 ANEVSEKSIIAVMKRKHASTVTSTSSASLKPQVQA-----AHPSSTASNMTY-------- 104
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
+S+ ES +QQIL
Sbjct: 105 --ESISESG----------------------------------------------IQQIL 116
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
+M G+W RE V AL A N+ ++AVEYLY G+PEQ+ P +T+
Sbjct: 117 EMVSGTWSREAVAYALYFASNDLDKAVEYLYFGLPEQSE---------------DPHKTE 161
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQIL 300
Q P + +A +LD LRN+ +F+ +R +VQ++P L
Sbjct: 162 GTQEHTQEPEASQDA----------------IQEWSLDALRNTPEFEYVRPLVQSDPSFL 205
Query: 301 QPMLQELGKQNPHLMRLIQEHQTDFLRLI-----------------NEPVEGGE-GNVLG 342
+ +L+ + + NP L++ I +++ DFLRL+ NEP GGE GN +G
Sbjct: 206 EEILEVIEEHNPQLVQFILDNKADFLRLVLDQPQEHQDDDVLHFQSNEPNNGGESGNQVG 265
Query: 343 QL 344
+
Sbjct: 266 KF 267
>gi|283945482|ref|NP_001164652.1| nuclear excision repair protein rad23 [Bombyx mori]
gi|217331039|gb|ACK38234.1| nuclear excision repair protein Rad23 [Bombyx mori]
Length = 324
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 116/373 (31%), Positives = 172/373 (46%), Gaps = 96/373 (25%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M V +KTL+ F+IE+ PE+ V +K IE +G D + A Q LI+ GK+L D +
Sbjct: 1 MLVTLKTLQQQTFQIEIDPEETVKALKLKIEVEKGKD-FVADHQRLIYAGKILLDDNKIN 59
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ E F+V+M+TK KVS S Q TS++ P + + +T A
Sbjct: 60 SYNIDEKKFIVIMVTKPKVSES-------------QPTSTSIPEAGESASTDSGDAK--- 103
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P++ PP P A P N + + LEAT+Q I+
Sbjct: 104 -----PKTVPPEEVVKPTTAETERVTETP---------------NTTSDAELEATIQSIM 143
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
DMG +DR V +ALRA++NN ERAVEYL +GIPE+
Sbjct: 144 DMG---YDRPQVEQALRASFNNRERAVEYLITGIPEELL--------------------- 179
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQIL 300
+Q A + P L FLR+ QFQ +R ++Q NP +L
Sbjct: 180 HEQEAEESSDEDP-----------------------LAFLRDQPQFQQMRAVIQQNPNLL 216
Query: 301 QPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVE------GGEGNVLG----QLASAMPQ 350
+LQ++G+ NP L+++I +HQ F+R++NEPV + NV QL S
Sbjct: 217 NAVLQQIGQTNPALLQVISQHQEAFVRMLNEPVNPSAAGVASDENVADIQQPQLGSQ--N 274
Query: 351 AVTVTPEEREAIE 363
+ V+ +++EAIE
Sbjct: 275 VIQVSAQDKEAIE 287
>gi|148679012|gb|EDL10959.1| RAD23a homolog (S. cerevisiae), isoform CRA_a [Mus musculus]
Length = 379
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 125/370 (33%), Positives = 184/370 (49%), Gaps = 59/370 (15%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D ++E
Sbjct: 22 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIKEY 81
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
+ E +FVVVM+TK+K + A+P T P T P S P PP
Sbjct: 82 HIDEKNFVVVMVTKAKAGQGIPAPPEASP-----TAVPEPSTPFPPVLASGMSHP---PP 133
Query: 123 QSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILDM 182
S + +P + +P P S S AAS LV GS E + +I+ M
Sbjct: 134 TSREDKSP---SEESTTTTSPESISGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSM 190
Query: 183 GGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNP-PAQTQA 241
G ++RE V+ ALRA+YNNP RAVEYL +GIP G+P P
Sbjct: 191 G---YERERVVAALRASYNNPHRAVEYLLTGIP-----------------GSPEPEHGSV 230
Query: 242 QQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQ 301
Q+ AP + AG L+FLR+ QFQ +R ++Q NP +L
Sbjct: 231 QESQAPE------------------QPATEAGENPLEFLRDQPQFQNMRQVIQQNPALLP 272
Query: 302 PMLQELGKQNPHLMRLIQEHQTDFLRLINEP------VEGGEGNVLGQLASAMPQA--VT 353
+LQ+LG++NP L++ I HQ F++++NEP + EG V G + PQ +
Sbjct: 273 ALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELADISDVEGEV-GAIGEEAPQMNYIQ 331
Query: 354 VTPEEREAIE 363
VTP+E+EAIE
Sbjct: 332 VTPQEKEAIE 341
>gi|34447211|ref|NP_033036.2| UV excision repair protein RAD23 homolog A [Mus musculus]
gi|26332489|dbj|BAC29962.1| unnamed protein product [Mus musculus]
gi|187952977|gb|AAI38685.1| Rad23a protein [Mus musculus]
Length = 362
Score = 152 bits (383), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 125/370 (33%), Positives = 185/370 (50%), Gaps = 59/370 (15%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D ++E
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIKEY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
+ E +FVVVM+TK+K + A+P T P T P S P PP
Sbjct: 65 HIDEKNFVVVMVTKAKAGQGIPAPPEASP-----TAVPEPSTPFPPVLASGMSHP---PP 116
Query: 123 QSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILDM 182
S + +P + +P P S S AAS LV GS E + +I+ M
Sbjct: 117 TSREDKSP---SEESTTTTSPESISGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSM 173
Query: 183 GGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNP-PAQTQA 241
G ++RE V+ ALRA+YNNP RAVEYL +GIP G+P P
Sbjct: 174 G---YERERVVAALRASYNNPHRAVEYLLTGIP-----------------GSPEPEHGSV 213
Query: 242 QQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQ 301
Q+ AP + + AG L+FLR+ QFQ +R ++Q NP +L
Sbjct: 214 QESQAPEQPA------------------TEAGENPLEFLRDQPQFQNMRQVIQQNPALLP 255
Query: 302 PMLQELGKQNPHLMRLIQEHQTDFLRLINEP------VEGGEGNVLGQLASAMPQA--VT 353
+LQ+LG++NP L++ I HQ F++++NEP + EG V G + PQ +
Sbjct: 256 ALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELADISDVEGEV-GAIGEEAPQMNYIQ 314
Query: 354 VTPEEREAIE 363
VTP+E+EAIE
Sbjct: 315 VTPQEKEAIE 324
>gi|432885045|ref|XP_004074630.1| PREDICTED: UV excision repair protein RAD23 homolog B-like [Oryzias
latipes]
Length = 395
Score = 151 bits (382), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 113/334 (33%), Positives = 178/334 (53%), Gaps = 31/334 (9%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + +KTL+ F+I++ E+ V +K+ IE +G + + + Q LI+ GK+L D T L+
Sbjct: 1 MLITLKTLQQQTFKIDIDEEETVKTLKERIEQEKGKESFSVAGQKLIYAGKILSDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E K+ E +FVVVM+TK K ++ + SA+ + + SSA + + VA
Sbjct: 61 EYKIDEKNFVVVMVTKPKTAAPSPKSSSASSSAPSSAPSSAAAAAAPTPPSVADKPAEVA 120
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P + E A P P P PA + + +D+ +A S LV GS+ + V +++
Sbjct: 121 PADKLEEKESSTAEPPPPPPPARSSESS-------TDLLSEAVSTLVTGSSYDTMVNEMM 173
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPP-AQT 239
MG ++RE V+ ALRA+YNNP+RAVEYL SGIP Q + S G P +++
Sbjct: 174 LMG---YEREQVVAALRASYNNPDRAVEYLLSGIPGQD------QGSRTGPDSTPAVSES 224
Query: 240 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGT-LDFLRNSQQFQALRTMVQANPQ 298
A A + ++P +AG G L FLRN QF +R ++Q N
Sbjct: 225 PAAPAGGTAAPTSTESSP-------------SAGGGNPLGFLRNQPQFHVMRQLIQQNAA 271
Query: 299 ILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP 332
+L +LQE+G++NP L++ I HQ F++++NEP
Sbjct: 272 LLPALLQEIGRENPELLQEISNHQEQFIQMLNEP 305
>gi|116283302|gb|AAH03846.1| Rad23a protein [Mus musculus]
Length = 349
Score = 151 bits (381), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 125/369 (33%), Positives = 184/369 (49%), Gaps = 56/369 (15%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D ++E
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIKEY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
+ E +FVVVM+TK+K + A+P T P T P S P PP
Sbjct: 65 HIDEKNFVVVMVTKAKAGQGIPAPPEASP-----TAVPEPSTPFPPVLASGMSHP---PP 116
Query: 123 QSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILDM 182
S + +P + +P P S S AAS LV GS E + +I+ M
Sbjct: 117 TSREDKSP---SEESTTTTSPESISGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSM 173
Query: 183 GGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQ 242
G ++RE V+ ALRA+YNNP RAVEYL +GIP S + G+ +
Sbjct: 174 G---YERERVVAALRASYNNPHRAVEYLLTGIP----------GSPEPEHGSVQESQAPE 220
Query: 243 QPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQP 302
QPA A AG L+FLR+ QFQ +R ++Q NP +L
Sbjct: 221 QPATEA-----------------------AGENPLEFLRDQPQFQNMRQVIQQNPALLPA 257
Query: 303 MLQELGKQNPHLMRLIQEHQTDFLRLINEP------VEGGEGNVLGQLASAMPQA--VTV 354
+LQ+LG++NP L++ I HQ F++++NEP + EG V G + PQ + V
Sbjct: 258 LLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELADISDVEGEV-GAIGEEAPQMNYIQV 316
Query: 355 TPEEREAIE 363
TP+E+EAIE
Sbjct: 317 TPQEKEAIE 325
>gi|380027731|ref|XP_003697572.1| PREDICTED: LOW QUALITY PROTEIN: UV excision repair protein RAD23
homolog B-like [Apis florea]
Length = 364
Score = 151 bits (381), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 109/334 (32%), Positives = 159/334 (47%), Gaps = 63/334 (18%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + +K L+ F +E+ P V D+K+ IET +G +PA Q LI+ GK+L D L
Sbjct: 1 MIITLKNLQQQTFTVEIDPSQTVRDLKQKIETQKG---FPAKYQKLIYAGKILTDDHPLA 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E + E F+VVM+TK K + +T + + SS QP++ PTV
Sbjct: 58 EYNIDEKKFIVVMVTKLKTGNGHTTTDEEHTSADNKEESSTTSLVAQPSSN-----PTV- 111
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
+ A P + A A V GQA L+ G + V I+
Sbjct: 112 ------QGASSPGNIIQEQSEASTTAGC---------VGGQAEXALLMGEDYNTMVNNIV 156
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
DMG ++RE V +ALRA++NNP+RAVEYL +GIP Q P Q +
Sbjct: 157 DMG---YEREQVEQALRASFNNPDRAVEYLLTGIPAQLF------------EDLPEDQLE 201
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQIL 300
AQ+ + G L FLR QFQ +R ++Q NPQ+L
Sbjct: 202 AQEQL------------------------QDHGQHPLAFLRMQPQFQQMRQVIQQNPQLL 237
Query: 301 QPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVE 334
+LQ++G+ NP L++LI ++Q F+R++NEPVE
Sbjct: 238 NAVLQQIGQTNPALLQLISQNQEAFVRMLNEPVE 271
>gi|341941880|sp|P54726.2|RD23A_MOUSE RecName: Full=UV excision repair protein RAD23 homolog A;
Short=HR23A; Short=mHR23A
gi|148679013|gb|EDL10960.1| RAD23a homolog (S. cerevisiae), isoform CRA_b [Mus musculus]
gi|219519380|gb|AAI45373.1| Rad23a protein [Mus musculus]
Length = 363
Score = 151 bits (381), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 125/369 (33%), Positives = 184/369 (49%), Gaps = 56/369 (15%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D ++E
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIKEY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
+ E +FVVVM+TK+K + A+P T P T P S P PP
Sbjct: 65 HIDEKNFVVVMVTKAKAGQGIPAPPEASP-----TAVPEPSTPFPPVLASGMSHP---PP 116
Query: 123 QSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILDM 182
S + +P + +P P S S AAS LV GS E + +I+ M
Sbjct: 117 TSREDKSP---SEESTTTTSPESISGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSM 173
Query: 183 GGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQ 242
G ++RE V+ ALRA+YNNP RAVEYL +GIP S + G+ +
Sbjct: 174 G---YERERVVAALRASYNNPHRAVEYLLTGIP----------GSPEPEHGSVQESQAPE 220
Query: 243 QPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQP 302
QPA A AG L+FLR+ QFQ +R ++Q NP +L
Sbjct: 221 QPATEA-----------------------AGENPLEFLRDQPQFQNMRQVIQQNPALLPA 257
Query: 303 MLQELGKQNPHLMRLIQEHQTDFLRLINEP------VEGGEGNVLGQLASAMPQA--VTV 354
+LQ+LG++NP L++ I HQ F++++NEP + EG V G + PQ + V
Sbjct: 258 LLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELADISDVEGEV-GAIGEEAPQMNYIQV 316
Query: 355 TPEEREAIE 363
TP+E+EAIE
Sbjct: 317 TPQEKEAIE 325
>gi|345565734|gb|EGX48682.1| hypothetical protein AOL_s00079g321 [Arthrobotrys oligospora ATCC
24927]
Length = 408
Score = 151 bits (381), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 134/397 (33%), Positives = 187/397 (47%), Gaps = 66/397 (16%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+K+ K LK F IE D +S VK I+T +G + S LI+ GK+L+D T+
Sbjct: 5 VKLTFKDLKNERFTIEAGTADTISTVKARIQTEKG---WEPSTVKLIYSGKILQDAQTVG 61
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ E F+V M++K+K T A ++ + S P S+ P T P A
Sbjct: 62 SYNIDEKGFIVCMVSKAK-------TAPKASSSSSAAAPSTPVKSSTPVQTPSAPIANAA 114
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
+VP A P P PAP A P A + S+L GS E+ + Q+
Sbjct: 115 SSSTVP--AAVPETPTPAPQVAATSQPTTAAFND--------PSSLAMGSARESAILQMT 164
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE--QTAVPPVARASAGGQAGNPPAQ 238
+MG + R V A+RAA+NNP+RAVEYL +GIPE Q PP + A PP Q
Sbjct: 165 EMG---FPRPDVEAAMRAAFNNPDRAVEYLMTGIPEHLQREAPPAQSSRA------PPTQ 215
Query: 239 TQA-----------QQPAAPAPTSGPNANPLDLF---------PQGLPNMGSNAGA---- 274
QPAA A + P++LF +G P G A
Sbjct: 216 PTTGATAAPAATTESQPAAAAAAAADVDEPVNLFEAAAAQRSGSRGTPAGGRGGAAVNPL 275
Query: 275 --------GTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFL 326
LDFLRN+ QFQ LR ++Q +PQ+L+P+LQ++G+ NP L +LI + FL
Sbjct: 276 AALAGGGGANLDFLRNNPQFQQLRQVIQEHPQMLEPILQQVGQANPQLAQLISTNPEGFL 335
Query: 327 RLINEPVEGGEGNVLGQLASAMPQAVTVTPEEREAIE 363
RL+ E ++ E A A+ VT EER+AIE
Sbjct: 336 RLLGEGIDEEELA---GAAPGGGLAIHVTEEERDAIE 369
>gi|328788815|ref|XP_623093.2| PREDICTED: UV excision repair protein RAD23 homolog B-like isoform
2 [Apis mellifera]
Length = 364
Score = 151 bits (381), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 109/334 (32%), Positives = 159/334 (47%), Gaps = 63/334 (18%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + +K L+ F +E+ P V D+K+ IE +G +PA Q LI+ GK+L D L
Sbjct: 1 MIITLKNLQQQTFTVEIDPSQTVRDLKQKIEIQKG---FPAKYQKLIYAGKILTDDHPLA 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E + E F+VVM+TK K + +T + + SS QP++ PTV
Sbjct: 58 EYNIDEKKFIVVMVTKLKTGNGHTTTDEEHTSADNKEESSTTSLVAQPSSN-----PTV- 111
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
+ A P + A A V GQA S L+ G + V I+
Sbjct: 112 ------QGASSPGNIIQEQSEASTTAGC---------VGGQAESALLMGEDYNTMVNNIV 156
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
DMG ++RE V +ALRA++NNP+RAVEYL +GIP Q P Q +
Sbjct: 157 DMG---YEREQVEQALRASFNNPDRAVEYLLTGIPAQLF------------EDLPEDQLE 201
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQIL 300
AQ+ + G L FLR QFQ +R ++Q NPQ+L
Sbjct: 202 AQEQL------------------------QDHGQHPLAFLRMQPQFQQMRQVIQQNPQLL 237
Query: 301 QPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVE 334
+LQ++G+ NP L++LI ++Q F+R++NEPVE
Sbjct: 238 NAVLQQIGQTNPALLQLISQNQEAFVRMLNEPVE 271
>gi|355768543|gb|EHH62732.1| UV excision repair protein RAD23-like protein A, partial [Macaca
fascicularis]
Length = 339
Score = 150 bits (380), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 119/349 (34%), Positives = 177/349 (50%), Gaps = 56/349 (16%)
Query: 23 VSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSSS 82
V +K+ IE +G D +P + Q LI+ GK+L D + + ++ E +FVVVM+TK+K
Sbjct: 1 VKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKTKAGQG 60
Query: 83 GASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPAPA 142
++ A+P ++++S PP PT+ P P +S E + AP +
Sbjct: 61 TSAPPEASPTAAPESSTSFPPA---PTSGMSHPQPAAREDKSPSEES--------APTTS 109
Query: 143 PAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNN 202
P P S S AAS LV GS E + +I+ MG ++RE V+ ALRA+YNN
Sbjct: 110 PESVSGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSMG---YERERVVAALRASYNN 166
Query: 203 PERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFP 262
P RAVEYL +GIP S + G+ ++QPA A
Sbjct: 167 PHRAVEYLLTGIP----------GSPEPEHGSVQESQVSEQPATEA-------------- 202
Query: 263 QGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQ 322
AG L+FLR+ QFQ +R ++Q NP +L +LQ+LG++NP L++ I HQ
Sbjct: 203 ---------AGENPLEFLRDQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQ 253
Query: 323 TDFLRLINEP------VEGGEGNVLGQLASAMPQA--VTVTPEEREAIE 363
F++++NEP + EG V G + PQ + VTP+E+EAIE
Sbjct: 254 EQFIQMLNEPPGELADISDVEGEV-GAIGEEAPQMNYIQVTPQEKEAIE 301
>gi|340716525|ref|XP_003396748.1| PREDICTED: UV excision repair protein RAD23 homolog B-like isoform
4 [Bombus terrestris]
Length = 357
Score = 150 bits (379), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 110/336 (32%), Positives = 160/336 (47%), Gaps = 65/336 (19%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + +K L+ F +E+ P V D+K+ IET +G +PA Q LI+ GK+L D L
Sbjct: 1 MIITLKNLQQQTFTVEIDPSQTVKDLKQKIETQKG---FPAKYQKLIYAGKILTDDHPLA 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E + E F+VVM+TK K + + + SS + QP++ PTV
Sbjct: 58 EYNIDEKKFIVVMVTKLKTGNGHTTEEEHTTNTDNKEESSTTSSVAQPSSN-----PTV- 111
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
+ A P A + A A V GQA S L+ G + V I+
Sbjct: 112 ------QGASNPTNTAQEQSEASTTAGC---------VGGQAESALLMGEDYNTMVNNIV 156
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
DMG ++RE V +ALRA++NNP+RAVEYL +GIP Q P Q +
Sbjct: 157 DMG---YEREQVEQALRASFNNPDRAVEYLLTGIPAQLF------------EDLPEDQLE 201
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQIL 300
AQ+ + G L FLR QFQ +R ++Q NPQ+L
Sbjct: 202 AQEQL------------------------QDHGQHPLAFLRMQPQFQQMRQVIQQNPQLL 237
Query: 301 QPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG 336
+LQ++G+ NP L++LI ++Q F+R++NEP GG
Sbjct: 238 NAVLQQIGQTNPALLQLISQNQEAFVRMLNEP--GG 271
>gi|304367641|gb|ADM26628.1| nucleotide excision repair factor Rad23 [Polypedilum vanderplanki]
Length = 383
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 129/379 (34%), Positives = 191/379 (50%), Gaps = 49/379 (12%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + +K L+ ++E V +K+ IE+ G + YPASQQ LI+ G +L D T+E
Sbjct: 1 MWITIKNLQQQTIKLEFDESQTVQKLKEKIESELGKE-YPASQQKLIYAGCILDDDKTIE 59
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
KV E F+VVM+ K+ V+++ A A +T ++ T + T + + T A
Sbjct: 60 SYKVDEKKFIVVMVKKATVAAAAAPEKEEA----GKTITNESTTEKKKEDTPASKSTTTA 115
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
S P + + PA A A A A S ++ QA +NLV G N VQ I+
Sbjct: 116 SSTSSPSKSSSEQSQQPAAAQETASGGAAASQSQIA----QAEANLVMGENYNTMVQNIM 171
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTA----VPPVARASAGGQAGNPP 236
+MG +DR++V+RAL A++NNPERAVEYL +GIPE P +GG GN
Sbjct: 172 EMG---YDRDSVVRALNASFNNPERAVEYLITGIPEMALQDRPAPVGGNEQSGGGGGNIG 228
Query: 237 AQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQAN 296
A A + SG N D P L FLR QFQ +R ++Q N
Sbjct: 229 AALDRSSNLASSGESGGN----DESP--------------LAFLRRQAQFQQMRNVIQQN 270
Query: 297 PQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGE-----------GNVLGQL- 344
P++L +LQ++G+ NP L++LI E+Q F+ ++NE +G + GN G L
Sbjct: 271 PEMLNAVLQQIGQANPALLQLISENQEAFVNMLNESEDGRQAPSGGNDDDDRGNFGGLLD 330
Query: 345 ASAMPQAVTVTPEEREAIE 363
++P+ T ++REAIE
Sbjct: 331 VGSVPE---FTQQDREAIE 346
>gi|340716521|ref|XP_003396746.1| PREDICTED: UV excision repair protein RAD23 homolog B-like isoform
2 [Bombus terrestris]
Length = 348
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 108/332 (32%), Positives = 158/332 (47%), Gaps = 63/332 (18%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + +K L+ F +E+ P V D+K+ IET +G +PA Q LI+ GK+L D L
Sbjct: 1 MIITLKNLQQQTFTVEIDPSQTVKDLKQKIETQKG---FPAKYQKLIYAGKILTDDHPLA 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E + E F+VVM+TK K + + + SS + QP++ PTV
Sbjct: 58 EYNIDEKKFIVVMVTKLKTGNGHTTEEEHTTNTDNKEESSTTSSVAQPSSN-----PTV- 111
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
+ A P A + A A V GQA S L+ G + V I+
Sbjct: 112 ------QGASNPTNTAQEQSEASTTAGC---------VGGQAESALLMGEDYNTMVNNIV 156
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
DMG ++RE V +ALRA++NNP+RAVEYL +GIP Q P Q +
Sbjct: 157 DMG---YEREQVEQALRASFNNPDRAVEYLLTGIPAQLF------------EDLPEDQLE 201
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQIL 300
AQ+ + G L FLR QFQ +R ++Q NPQ+L
Sbjct: 202 AQEQL------------------------QDHGQHPLAFLRMQPQFQQMRQVIQQNPQLL 237
Query: 301 QPMLQELGKQNPHLMRLIQEHQTDFLRLINEP 332
+LQ++G+ NP L++LI ++Q F+R++NEP
Sbjct: 238 NAVLQQIGQTNPALLQLISQNQEAFVRMLNEP 269
>gi|297703760|ref|XP_002828804.1| PREDICTED: UV excision repair protein RAD23 homolog A [Pongo
abelii]
Length = 485
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 127/356 (35%), Positives = 182/356 (51%), Gaps = 71/356 (19%)
Query: 23 VSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSSS 82
V +K+ IE +G D +P + Q LI+ GK+L D + + ++ E +FVVVM+TK+K +
Sbjct: 148 VKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKTK---A 204
Query: 83 GASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQSVPESAPPPAA-----PAP 137
G T SA P A PT+ ++TS PAPT S PPPAA P+
Sbjct: 205 GQGT-SAPP--------EASPTAAPESSTSFLPAPTSG------MSHPPPAAREDKSPSE 249
Query: 138 APAPAPAPAPAPAPVSSVSDVYGQ--AASNLVAGSNLEATVQQILDMGGGSWDRETVIRA 195
AP +P V S + AAS LV GS E + +I+ MG ++RE V+ A
Sbjct: 250 ESAPTTSPESVSGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSMG---YERERVVAA 306
Query: 196 LRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNA 255
LRA+YNNP RAVEYL +GIP S + G+ ++QPA
Sbjct: 307 LRASYNNPHRAVEYLLTGIP----------GSPEPEHGSVQESQVSEQPA---------- 346
Query: 256 NPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLM 315
+ AG L+FLR+ QFQ +R ++Q NP +L +LQ+LG++NP L+
Sbjct: 347 --------------TEAGENPLEFLRDQPQFQNMRQVIQQNPALLPALLQQLGQENPQLL 392
Query: 316 RLIQEHQTDFLRLINEP------VEGGEGNVLGQLASAMPQA--VTVTPEEREAIE 363
+ I HQ F++++NEP + EG V G + PQ + VTP+E+EAIE
Sbjct: 393 QQISRHQEQFIQMLNEPPGELADISDVEGEV-GAIGEEAPQMNYIQVTPQEKEAIE 447
>gi|325187409|emb|CCA21947.1| UV excision repair protein RAD23 putative [Albugo laibachii Nc14]
Length = 420
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 116/331 (35%), Positives = 160/331 (48%), Gaps = 71/331 (21%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTL+G F IE +P D V+ VK I+ Q +PA QQ LIH GK+LKD T L
Sbjct: 1 MKLTVKTLQGNAFSIEAEPTDTVAVVKTKIQETQE---FPAIQQKLIHAGKILKDDTALS 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E + EN F+VVM++K+K S + TS+ P T+T T T P P+ +
Sbjct: 58 EYNIKENDFIVVMVSKAKGS---------------RPTSALPSTATAQTPTVPPPVPSTS 102
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
S S P + + P A + S+ +AA+ V Q+
Sbjct: 103 AVSSSETSTPLSVSSSTRPTTEGTMASGSSGTSTTPSSTAEAAN-----------VGQLC 151
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
DMG + E V L+AA+ NP+RAVEYL +GIPE P
Sbjct: 152 DMG---FPEEQVRSCLQAAFGNPDRAVEYLMNGIPENLVNPT------------------ 190
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQIL 300
AA APT+G AG+L+ LRN QF + R +V+ NP L
Sbjct: 191 ---SAAAAPTTG------------------GPSAGSLEQLRNHPQFASFREVVRTNPAAL 229
Query: 301 QPMLQELGKQNPHLMRLIQEHQTDFLRLINE 331
+LQ++G QNP L+RLI E+Q+ FL+++NE
Sbjct: 230 PALLQQIGGQNPELLRLIHENQSQFLQMLNE 260
>gi|332853400|ref|XP_003316200.1| PREDICTED: UV excision repair protein RAD23 homolog A [Pan
troglodytes]
Length = 463
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 118/349 (33%), Positives = 177/349 (50%), Gaps = 57/349 (16%)
Query: 23 VSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSSS 82
V +K+ IE +G D +P + Q LI+ GK+L D + + ++ E +FVVVM+TK+K
Sbjct: 126 VKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKTKAGQG 185
Query: 83 GASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPAPA 142
++ A+P ++++S PP PT+ P P +S E + AP +
Sbjct: 186 TSAPPEASPTAAPESSTSFPPA---PTSGMSHPPPAAREDKSPSEES--------APTTS 234
Query: 143 PAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNN 202
P P S S AAS LV GS E + +I+ MG ++RE V+ ALRA+YNN
Sbjct: 235 PESVSGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSMG---YERERVVAALRASYNN 291
Query: 203 PERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFP 262
P RAVEYL +GIP S + G+ ++QPA
Sbjct: 292 PHRAVEYLLTGIP----------GSPEPEHGSVQESQVSEQPA----------------- 324
Query: 263 QGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQ 322
+ AG L+FLR+ QFQ +R ++Q NP +L +LQ+LG++NP L++ I HQ
Sbjct: 325 -------TEAGENPLEFLRDQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQ 377
Query: 323 TDFLRLINEP------VEGGEGNVLGQLASAMPQA--VTVTPEEREAIE 363
F++++NEP + EG V G + PQ + VTP+E+EAIE
Sbjct: 378 EQFIQMLNEPPGELADISDVEGEV-GAIGEEAPQMNYIQVTPQEKEAIE 425
>gi|281353038|gb|EFB28622.1| hypothetical protein PANDA_009870 [Ailuropoda melanoleuca]
Length = 339
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 120/349 (34%), Positives = 177/349 (50%), Gaps = 56/349 (16%)
Query: 23 VSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSSS 82
V +K+ IE +G D +P + Q LI+ GK+L D + + ++ E +FVVVM+TK+K S
Sbjct: 1 VKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKAKTSPG 60
Query: 83 GASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPAPA 142
+ A+P ++++S PP P + P PT +S E + P +
Sbjct: 61 TSVPPEASPTAAPESSTSFPPA---PASGMSHPPPTAREDKSPSEES--------VPTTS 109
Query: 143 PAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNN 202
P P S S AAS LV GS E + +I+ MG ++RE V+ ALRA+YNN
Sbjct: 110 PESVSGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSMG---YERERVVAALRASYNN 166
Query: 203 PERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFP 262
P RAVEYL +GIP S + G+ ++QPA T G NPL+
Sbjct: 167 PHRAVEYLLTGIP----------GSPEPEHGSVQESQVSEQPA----TEGAGENPLE--- 209
Query: 263 QGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQ 322
FLR+ QFQ +R ++Q NP +L +LQ+LG++NP L++ I HQ
Sbjct: 210 ----------------FLRDQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQ 253
Query: 323 TDFLRLINEP------VEGGEGNVLGQLASAMPQA--VTVTPEEREAIE 363
F++++NEP + EG V G + PQ + VTP+E+EAIE
Sbjct: 254 EQFIQMLNEPPGELADISDVEGEV-GAIGEEAPQMNYIQVTPQEKEAIE 301
>gi|350404552|ref|XP_003487142.1| PREDICTED: UV excision repair protein RAD23 homolog B-like [Bombus
impatiens]
Length = 365
Score = 149 bits (375), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 111/336 (33%), Positives = 160/336 (47%), Gaps = 66/336 (19%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + +K L+ F +E+ P V D+K+ IET +G +PA Q LI+ GK+L D L
Sbjct: 1 MIITLKNLQQQTFTVEIDPSQTVKDLKQKIETQKG---FPAKYQKLIYAGKILTDDHPLA 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E + E F+VVM+TK K + +G +T + TS +VA
Sbjct: 58 EYNIDEKKFIVVMVTKLK-TGNGHTTTEEEHTTNTDNKEESSTTS------------SVA 104
Query: 121 PPQSVP--ESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQ 178
P S P + A P + A A V GQA S L+ G + V
Sbjct: 105 QPSSNPTVQGASNPTNTVQEQSEASTTAGC---------VGGQAESALLMGEDYNTMVNN 155
Query: 179 ILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQ 238
I+DMG ++RE V +ALRA++NNP+RAVEYL +GIP Q P Q
Sbjct: 156 IVDMG---YEREQVEQALRASFNNPDRAVEYLLTGIPAQLF------------EDLPEDQ 200
Query: 239 TQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQ 298
+AQ+ + G L FLR QFQ +R ++Q NPQ
Sbjct: 201 LEAQEQL------------------------QDHGQHPLAFLRMQPQFQQMRQVIQQNPQ 236
Query: 299 ILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVE 334
+L +LQ++G+ NP L++LI ++Q F+R++NEPVE
Sbjct: 237 LLNAVLQQIGQTNPALLQLISQNQEAFVRMLNEPVE 272
>gi|443714722|gb|ELU07000.1| hypothetical protein CAPTEDRAFT_148202, partial [Capitella teleta]
Length = 320
Score = 149 bits (375), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 114/343 (33%), Positives = 175/343 (51%), Gaps = 36/343 (10%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + +KTL+ F+IE++ +KV +K+ I +G D Y A Q LI+ GK+L D +
Sbjct: 1 MIITLKTLQQQTFKIEIEESEKVLALKERIAQEKGGD-YAADNQKLIYAGKILDDKQCIS 59
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E K+ E++FVV+M+TK+K + + A PA Q + A + + + TP T
Sbjct: 60 EYKIQESNFVVIMVTKAKPKAPEKAP-EAKPAEQPTPSQPAATPAAASSEPAATPTET-- 116
Query: 121 PPQSVPESAPPPAAPAPAPAPAPA---PAPAPAPVSSVSDVYGQ--------AASNLVAG 169
P + P +PAPA A + +PA V+ + A S LV G
Sbjct: 117 -----PAAVDQPMSPAPAAATTESMETSSPATEVVTEATPADAPPAAVQPESAESTLVTG 171
Query: 170 SNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAG 229
+ E TVQ+++ MG + R+ V+RALRA++NNP+RAVEYL SGIP++ A
Sbjct: 172 ESYEQTVQEMMSMG---FARDMVVRALRASFNNPDRAVEYLLSGIPDEPVPEAPVAAPPA 228
Query: 230 GQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQAL 289
P A Q AP + S AG L FLR++ QF+ +
Sbjct: 229 AGQQPPAAGGQPPAAPPAAPATPGTP-------------ASTAGEDPLHFLRSTPQFETM 275
Query: 290 RTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP 332
R +VQ+NP +L LQE+ + NP L ++I E+Q F++++N+P
Sbjct: 276 RRLVQSNPGLLSNFLQEIRQANPRLFQMINENQERFVQMLNDP 318
>gi|168046898|ref|XP_001775909.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162672741|gb|EDQ59274.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 174
Score = 149 bits (375), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 84/212 (39%), Positives = 112/212 (52%), Gaps = 43/212 (20%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG +F+++V P + V +VKK IE QG ++P +QQ+LI+QGKVLKD TT+E
Sbjct: 1 MKISVKTLKGNYFDLDVTPLETVINVKKRIEDSQGEQLFPCAQQLLIYQGKVLKDETTME 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+NKV EN F VVML+K+ ++ + N + Q +
Sbjct: 61 DNKVLENEFFVVMLSKT------SNILKQGLCNLSMRAFFCVKYLNQHS----------- 103
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
A S +V NLVAG NLE+ Q+IL
Sbjct: 104 -----------------------GIGKGTAHFQSSRNV---CCFNLVAGINLESKAQEIL 137
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYS 212
D+GGGSWD +TV+ ALRAA NN ERA+EYL S
Sbjct: 138 DIGGGSWDFDTVVHALRAASNNVERALEYLSS 169
>gi|164660784|ref|XP_001731515.1| hypothetical protein MGL_1698 [Malassezia globosa CBS 7966]
gi|159105415|gb|EDP44301.1| hypothetical protein MGL_1698 [Malassezia globosa CBS 7966]
Length = 406
Score = 149 bits (375), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 124/389 (31%), Positives = 186/389 (47%), Gaps = 33/389 (8%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VK+L G +F I+V+P D V VK+ I+ QG +PA Q LI+ GK+L D +
Sbjct: 1 MKLLVKSLAGGNFHIDVEPSDSVGSVKQKIQASQG---HPAENQKLIYSGKILADEKNMG 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPA-PTV 119
E ++ E F+VVM++K K + +A ++ + A +T + S TPA P
Sbjct: 58 EYEIKEKDFLVVMVSKPKAKKVESDKPVSADSSAQAAPAPASAAATGESALSATPAKPKA 117
Query: 120 APPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQI 179
P + S P AA A + PAP+ P ++ + ++G+ LE V I
Sbjct: 118 ESPATPAASTPAEAAGASSSNLPSTPAPSNGPTNASGSTGSLQTGSFLSGAELETAVSSI 177
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNP---P 236
++MG + +E V RA+R ++NNP+RAVEYL +G+P++TA P P P
Sbjct: 178 IEMG---FSKEDVQRAMRMSFNNPDRAVEYLMNGLPDETAAAPSRTTGVPATPATPSPAP 234
Query: 237 AQTQAQQPAAPAPTSGPNAN-PLDLFPQ-------------GLPNMGSNAGAGTLDFLRN 282
+ + P PNA +LF Q GL G LD L N
Sbjct: 235 VTSMQETPTGAGAGRAPNAGQSGNLFEQAAAMQSGTNRASEGLLGEEDAQGRQILD-LGN 293
Query: 283 SQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLI-NEPVEGGEGN-- 339
Q LRT+++ NP LQP++Q L + NP L + LR++ E +EG +
Sbjct: 294 PQVLSQLRTLLEQNPAALQPLVQALVQSNPQLAEAMSADPEGVLRMLAGEGLEGEDSFEV 353
Query: 340 -VLGQLA----SAMPQAVTVTPEEREAIE 363
L QLA + + Q V + ER+AIE
Sbjct: 354 PSLQQLADEDRTQVEQIVAMGIPERKAIE 382
>gi|432091539|gb|ELK24564.1| UV excision repair protein RAD23 like protein B, partial [Myotis
davidii]
Length = 414
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 124/398 (31%), Positives = 188/398 (47%), Gaps = 79/398 (19%)
Query: 23 VSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTK------ 76
V +K+ IE+ +G D +P + Q LI+ GK+L D T L+E K+ E +FVVVM+TK
Sbjct: 1 VKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPKAVTT 60
Query: 77 --------SKVSSSGASTVSAAPA-------------------------NQAQTTSSAPP 103
S ++++ + S APA T + P
Sbjct: 61 PAPTTTQQSNLTTTTTVSSSTAPAVAQVPTPTPALAPTPTPTPTPTLTPTPTPTPTPTPT 120
Query: 104 TSTQPTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSV-----SDV 158
+ PT TS TPA A + P SA P PA P + S+ S++
Sbjct: 121 PTPTPTPTSITPASATASSEPAPVSATKQENPVEQPAETPVATSPTSTDSTSGDSSRSNL 180
Query: 159 YGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQT 218
+ A S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP
Sbjct: 181 FEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIP--- 234
Query: 219 AVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGP--NANPLDLFPQGLPNMGSNAGAGT 276
G+ +Q P P T+GP ++ +++G
Sbjct: 235 --------------GDRESQAVVDPP--PVATTGPPQSSVAAAAATTTATTTTTSSGGHP 278
Query: 277 LDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG 336
L+FLRN QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F++++NEPV+
Sbjct: 279 LEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEA 338
Query: 337 -----------EGNVLGQLASAMPQAVTVTPEEREAIE 363
+ + S + VTP+E+EAIE
Sbjct: 339 GGQGGGGGGGGGSGGIAEAGSGHMNYIQVTPQEKEAIE 376
>gi|156362373|ref|XP_001625753.1| predicted protein [Nematostella vectensis]
gi|156212600|gb|EDO33653.1| predicted protein [Nematostella vectensis]
Length = 364
Score = 147 bits (372), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 116/373 (31%), Positives = 179/373 (47%), Gaps = 57/373 (15%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + KTL+ F++E+ ++ V +K+ IE +G D YP LI+ GK+L D L+
Sbjct: 1 MIITFKTLQQQTFKVEIGEDETVLKLKQKIEADKGKDAYPHGNIKLIYAGKILNDDNPLK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E + E SFVV+M+ K K + + A + Q +++P STQ ++T+Q + A
Sbjct: 61 EYNIDEKSFVVIMVAKPKPAPA-AVAPAPVTTTIPQAATASP--STQASSTAQEDSKPEA 117
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P E+ A + + A P S + +A S L G+ E V +I+
Sbjct: 118 KPD---EAKSTSTETAASATTTASTPAASTPRSYIE----EAESALATGTEYEGLVTEIM 170
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
+MG ++R+ V+RAL+A++NNP+RAVEYL +GIP+ +P GGQ
Sbjct: 171 NMG---FERDQVVRALQASFNNPDRAVEYLTTGIPD---LPSERVGDQGGQDEGEEETAA 224
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQIL 300
+L+FLR QF +R MVQ NP +L
Sbjct: 225 EG-------------------------------VSSLEFLRTQPQFITMRRMVQQNPGVL 253
Query: 301 QPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVE------GGEGNVLGQLASAMP----Q 350
+LQ +G+ NP L++LI HQ +F+R++NEP + GGEG P
Sbjct: 254 PQLLQSMGQSNPSLLQLISSHQDEFIRMLNEPDDGPQPAAGGEGGQQSVPGEGAPPPGVS 313
Query: 351 AVTVTPEEREAIE 363
+ +TP E+EAIE
Sbjct: 314 YIQITPVEKEAIE 326
>gi|194332576|ref|NP_001123777.1| uncharacterized protein LOC100170527 [Xenopus (Silurana)
tropicalis]
gi|156914684|gb|AAI52591.1| Zgc:123349 [Danio rerio]
gi|189441745|gb|AAI67540.1| LOC100170527 protein [Xenopus (Silurana) tropicalis]
Length = 404
Score = 147 bits (372), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 140/394 (35%), Positives = 203/394 (51%), Gaps = 60/394 (15%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+ + +KTL+ F++++ E V +K+ IE +G D +PA Q LI+ GK+L D L+
Sbjct: 2 LTITLKTLQQQTFKVQIDEELTVKALKEKIEEEKGKDGFPAVGQKLIYAGKILNDDIPLK 61
Query: 61 ENKVAENSFVVVMLTKSKVSSSGAST----VSAAPANQAQTTSSAPPTSTQPTTTSQTPA 116
E K+ E +FVVVM+TK K ++S + VS P +Q TT APP ++ T+ PA
Sbjct: 62 EYKIDEKNFVVVMVTKPKSAASPQTPTPVPVSETPTHQP-TTPVAPPNASIVPETTPDPA 120
Query: 117 PTVAPPQSV-----PESAPPPAAPAPAPAPAPAPAPAPAPV-----------------SS 154
P V P SV P +APP A+ P A PAPV +S
Sbjct: 121 P-VEPAASVEPIDPPITAPPAASEDTVETTEPVSA-TPAPVVEEEIQGQEEQAIAQSEAS 178
Query: 155 VSD---VYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLY 211
++D + AAS LV G E V +I+ MG ++RE VI ALRA++NNP+RAVEYL
Sbjct: 179 LTDELSLLEAAASILVTGQAYENLVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLL 235
Query: 212 SGIPEQTAVPP--VARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMG 269
+GIP ++ PP V R + P Q PAA SG G
Sbjct: 236 TGIPAESEQPPQEVVRPTPSSNPTPPAPQRAQPPPAAAGAESG----------------G 279
Query: 270 SNAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLI 329
+ A A L+FLR+ QFQ +R ++Q NP +L + Q+LG+ NP L++ I +HQ F++++
Sbjct: 280 AQASANPLEFLRHQPQFQQMRQIIQQNPSLLPALQQQLGRDNPQLLQQITQHQERFVQML 339
Query: 330 NEPVEGGEGNVLGQLASAMPQAVTVTPEEREAIE 363
N A+ + VTP+E+EAIE
Sbjct: 340 N-------EPEAEAPAAPQTNYIQVTPQEKEAIE 366
>gi|301771238|ref|XP_002921030.1| PREDICTED: UV excision repair protein RAD23 homolog A-like
[Ailuropoda melanoleuca]
Length = 375
Score = 147 bits (371), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 117/349 (33%), Positives = 175/349 (50%), Gaps = 57/349 (16%)
Query: 23 VSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSSS 82
V +K+ IE +G D +P + Q LI+ GK+L D + + ++ E +FVVVM+TK+K S
Sbjct: 38 VKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKAKTSPG 97
Query: 83 GASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPAPA 142
+ A+P ++++S PP P + P PT +S E + P +
Sbjct: 98 TSVPPEASPTAAPESSTSFPPA---PASGMSHPPPTAREDKSPSEES--------VPTTS 146
Query: 143 PAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNN 202
P P S S AAS LV GS E + +I+ MG ++RE V+ ALRA+YNN
Sbjct: 147 PESVSGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSMG---YERERVVAALRASYNN 203
Query: 203 PERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFP 262
P RAVEYL +GIP S + G+ ++QPA
Sbjct: 204 PHRAVEYLLTGIP----------GSPEPEHGSVQESQVSEQPA----------------- 236
Query: 263 QGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQ 322
+ G L+FLR+ QFQ +R ++Q NP +L +LQ+LG++NP L++ I HQ
Sbjct: 237 -------TEGGENPLEFLRDQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQ 289
Query: 323 TDFLRLINEP------VEGGEGNVLGQLASAMPQA--VTVTPEEREAIE 363
F++++NEP + EG V G + PQ + VTP+E+EAIE
Sbjct: 290 EQFIQMLNEPPGELADISDVEGEV-GAIGEEAPQMNYIQVTPQEKEAIE 337
>gi|395513058|ref|XP_003760747.1| PREDICTED: UV excision repair protein RAD23 homolog A [Sarcophilus
harrisii]
Length = 404
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 123/362 (33%), Positives = 183/362 (50%), Gaps = 77/362 (21%)
Query: 22 KVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSS 81
+V +K+ IE +G D +P S Q LI+ GK+L D + + K+ E +FVVVM+TK+K
Sbjct: 62 QVKVLKEKIEAEKGRDAFPVSGQKLIYAGKILSDDVPIRDYKIDEKNFVVVMVTKAK--- 118
Query: 82 SGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPAP 141
A ++AP+ + ++ A + +P+T + VA P PP AP+ P
Sbjct: 119 --AGLATSAPS---EPSAPAAANTLEPSTPTPPAPAIVAMPL-------PPPAPSEEQKP 166
Query: 142 APAPAPAPAPVSSVSDVY--------GQAASNLVAGSNLEATVQQILDMGGGSWDRETVI 193
A PA P + + AAS LV GS E + +I+ MG ++RE V+
Sbjct: 167 AEEPAAGTPPEAGSGSLPSSGSSGQEDDAASTLVTGSEYETMLTEIMSMG---YERERVV 223
Query: 194 RALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT----QAQQPAAPAP 249
ALRA+YNNP RAVEYL +GIP G+P ++ ++Q P PAP
Sbjct: 224 AALRASYNNPHRAVEYLLTGIP-----------------GSPEPESGPVQESQAPEQPAP 266
Query: 250 TSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGK 309
G N L+FLR+ QFQ +R ++Q NP +L +LQ+LG+
Sbjct: 267 EGGEN---------------------PLEFLRDQPQFQNMRQVIQQNPALLPALLQQLGQ 305
Query: 310 QNPHLMRLIQEHQTDFLRLINEP------VEGGEGNVLGQLASAMPQA--VTVTPEEREA 361
+NP L++ I HQ F++++NEP + EG V G + PQ + VTP+E+EA
Sbjct: 306 ENPQLLQQISRHQEQFIQMLNEPTGELADMSDVEGEV-GAIGEESPQMNYIQVTPQEKEA 364
Query: 362 IE 363
IE
Sbjct: 365 IE 366
>gi|354479499|ref|XP_003501947.1| PREDICTED: UV excision repair protein RAD23 homolog A-like
[Cricetulus griseus]
Length = 375
Score = 145 bits (366), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 120/350 (34%), Positives = 177/350 (50%), Gaps = 56/350 (16%)
Query: 22 KVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSS 81
+V +K+ IE +G D +P + Q LI+ GK+L D ++E + E +FVVVM+TK+K
Sbjct: 36 EVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILNDDVPIKEYHIDEKNFVVVMVTKAKAGQ 95
Query: 82 SGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPAP 141
S + +P ++++ PP PT+ P PP S + +P + A A
Sbjct: 96 STPAPPEVSPTAAPESSTPFPPA---PTSGMSHP-----PPASREDKSPSEES---ATAT 144
Query: 142 APAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYN 201
+P P S S AAS LV GS E + +I+ MG ++RE V+ ALRA+YN
Sbjct: 145 SPESISGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSMG---YERERVVAALRASYN 201
Query: 202 NPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLF 261
NP RAVEYL +GIP S + G+ +QPA A
Sbjct: 202 NPHRAVEYLLTGIP----------GSPEPEHGSVQESQVPEQPAVEA------------- 238
Query: 262 PQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEH 321
AG L+FLR+ QFQ +R ++Q NP +L +LQ+LG++NP L++ I H
Sbjct: 239 ----------AGENPLEFLRDQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRH 288
Query: 322 QTDFLRLINEP------VEGGEGNVLGQLASAMPQA--VTVTPEEREAIE 363
Q F++++NEP + EG V G + PQ + VTP+E+EAIE
Sbjct: 289 QEQFIQMLNEPPGELADISDVEGEV-GAIGEEAPQMNYIQVTPQEKEAIE 337
>gi|440902080|gb|ELR52923.1| UV excision repair protein RAD23-like protein A [Bos grunniens
mutus]
Length = 391
Score = 145 bits (366), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 125/383 (32%), Positives = 192/383 (50%), Gaps = 56/383 (14%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAP---ANQAQTT------SSAPPTSTQPTTTSQ 113
++ E +F V + + AP +QA+T+ S A PT+T ++TS
Sbjct: 65 RIDEKNF-------VVVMVTKVGVLMPAPFFWVSQAKTSPGTSVPSEASPTATPESSTSF 117
Query: 114 TPAPTVA---PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGS 170
AP PP + E P AP +P P+ S + AAS LV GS
Sbjct: 118 PSAPASGMSHPPPTAREDKSPSEESAPTTSPESVSGSVPSSGSGGRE--EDAASTLVTGS 175
Query: 171 NLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGG 230
E + +I+ MG ++RE V+ ALRA+YNNP RAVEYL + E P GG
Sbjct: 176 EYETMLTEIMSMG---YERERVVAALRASYNNPHRAVEYLLTVRKELLQEP-------GG 225
Query: 231 QAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGT--LDFLRNSQQFQA 288
+ P + + + P +PA G+ G G L+FLR+ QFQ
Sbjct: 226 ERWGGPGRAERRPPVSPARAEYAG--------------GAAVGTGENPLEFLRDQPQFQN 271
Query: 289 LRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP------VEGGEGNVLG 342
+R ++Q NP +L +LQ+LG++NP L++ I HQ F++++NEP + EG V G
Sbjct: 272 MRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELVDISDVEGEV-G 330
Query: 343 QLASAMPQA--VTVTPEEREAIE 363
+ PQ + VTP+E+EAIE
Sbjct: 331 AIGEEAPQMNYIQVTPQEKEAIE 353
>gi|195064359|ref|XP_001996553.1| GH23932 [Drosophila grimshawi]
gi|193892099|gb|EDV90965.1| GH23932 [Drosophila grimshawi]
Length = 470
Score = 145 bits (365), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 111/365 (30%), Positives = 172/365 (47%), Gaps = 49/365 (13%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + VK L+ F I+ PE V D+KK I +G++ Y +Q LI+ G +L D T+
Sbjct: 1 MIITVKNLQQQTFSIDFDPEKTVLDLKKTIFNERGAE-YLVEKQKLIYAGVILTDERTIS 59
Query: 61 ENKVAENSFVVVMLTKS-KVSSSGAST-----VSAAPANQAQTTSSAP------------ 102
KV E F+VVMLT+ V+ SG+ T V++A Q T++ P
Sbjct: 60 SYKVDEKKFIVVMLTRDISVTGSGSITNTTDAVASAQRKTQQETTAQPKAAAAESKAEAK 119
Query: 103 PTSTQPTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQ- 161
PTS T +S+ E P + A A A A S D+ G+
Sbjct: 120 PTSKSNAVAEGTTKTNKTTNESIVE---PASTAAVAGAARATDVDVTASDYSSIDLVGEL 176
Query: 162 --------AASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 213
A SNL+ G TV +++MG + R+ V RA+ A++NNPERAVEYL +G
Sbjct: 177 ANASLQTRAESNLLMGEEYNRTVASMIEMG---YARDQVERAMSASFNNPERAVEYLITG 233
Query: 214 IPEQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAG 273
IP++ ++ Q Q S ++ +++
Sbjct: 234 IPQEESLFNAGHDDEDVARAGSLLQQQVGGGGDGGSAS---------------DLQTDSS 278
Query: 274 AGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPV 333
A +FLR+ QF +R+++ NP +L +LQ++G+ NP L++LI E+Q FL ++N+P+
Sbjct: 279 ADPFEFLRSQPQFLQMRSLIYQNPHLLHAVLQQIGQTNPALLQLISENQDAFLNMLNQPL 338
Query: 334 EGGEG 338
EG G
Sbjct: 339 EGEVG 343
>gi|308808630|ref|XP_003081625.1| Nucleotide excision repair factor NEF2, RAD23 component (ISS)
[Ostreococcus tauri]
gi|116060090|emb|CAL56149.1| Nucleotide excision repair factor NEF2, RAD23 component (ISS),
partial [Ostreococcus tauri]
Length = 245
Score = 145 bits (365), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 92/212 (43%), Positives = 126/212 (59%), Gaps = 20/212 (9%)
Query: 162 AASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP 221
+ + +V G LEATV I+ MG ++RE V++ALRAA+NNP+RAVEYL +GIPEQ P
Sbjct: 5 SGAGMVMGPELEATVANIMTMG---FEREQVLKALRAAFNNPDRAVEYLLTGIPEQAEAP 61
Query: 222 PVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNM-GSNAGA-GTLDF 279
A + PA A Q ++ L+LFP+G+P+M G AG G LDF
Sbjct: 62 RPAAQAQ-------PAAAAAPQAPQADVSAALGGGALNLFPEGIPDMSGDGAGDDGMLDF 114
Query: 280 LRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGN 339
LR + QFQA+R MVQ NPQILQPML EL +QNP L LI +Q +FL L+NEP+ +
Sbjct: 115 LRENPQFQAIRAMVQGNPQILQPMLAELQRQNPQLYHLINANQEEFLALLNEPLPENIQD 174
Query: 340 VLGQLASAMPQA--------VTVTPEEREAIE 363
++ +P+ + +T EERE ++
Sbjct: 175 LMSDFGEGVPELEGQGEGMQIELTQEERETVD 206
>gi|115438372|ref|XP_001218049.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|114188864|gb|EAU30564.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 377
Score = 144 bits (364), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 134/376 (35%), Positives = 189/376 (50%), Gaps = 52/376 (13%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ K LK FEI+ +P + V VK+ I ++G +V Q LI+ GK+LKD T+E
Sbjct: 1 MKLTFKDLKQEKFEIDAEPSETVGQVKERICQLKGWEV---PQLKLIYSGKILKDENTIE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
KV E F+V M++K K SSS SAAP S P+T S+ A T A
Sbjct: 58 SYKVEEKGFIVYMVSKPKTSSS-----SAAP-------------SQGPSTPSRAAASTPA 99
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P + + PA AP P+PA A S+ +D S L+ G E V Q+
Sbjct: 100 APPAPAPATSAPAQAAPPATPSPAATGASQSGSAFND-----PSALMTGRENENAVAQME 154
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
MG + R+ + RA+RAA+ NP+RAVEYL SGIP+ + A A
Sbjct: 155 SMG---FARDDINRAMRAAFFNPDRAVEYLLSGIPDNIQQEQQQQQQQQQAAAAAAASPT 211
Query: 241 AQQPAAPAP-TSGPNANPLDLFPQ----GLPNMGSNAGAG-----TLDFLRNSQQFQALR 290
Q P+ + T+ P++LF G + G +G LDFLR++ FQ LR
Sbjct: 212 PQAPSGESGLTTAGGDEPVNLFEAAAQAGTQDTGRAGRSGGEALPNLDFLRHNPHFQQLR 271
Query: 291 TMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMP- 349
+VQ NPQ+L+P+LQ+L NP + LI +++ FL+L++E E G A+P
Sbjct: 272 QLVQQNPQMLEPILQQLASGNPQIAALIGQNEEQFLQLLSEEDEEG----------ALPP 321
Query: 350 --QAVTVTPEEREAIE 363
+ VT EER+AIE
Sbjct: 322 GTHQIHVTEEERDAIE 337
>gi|194771119|ref|XP_001967622.1| GF19257 [Drosophila ananassae]
gi|190614417|gb|EDV29941.1| GF19257 [Drosophila ananassae]
Length = 405
Score = 144 bits (363), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 105/339 (30%), Positives = 163/339 (48%), Gaps = 38/339 (11%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + +K L+ F IE + E V ++KK I V+GS+ Y +Q LI+ G +L D T+
Sbjct: 1 MIITIKNLQQQTFTIEFEAEKTVFELKKKIFDVRGSE-YIVEKQKLIYAGVILVDDHTIS 59
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
V E F+VVMLT+ SS+ S + A Q + + P ++ T+ S T +
Sbjct: 60 SYNVDEKKFIVVMLTRDTASSTCQSRIKEADNAQNRLCLNTQPLPSEITSNSDTFCGSTN 119
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P + A + +VS + +A SNL+ G TVQ ++
Sbjct: 120 QPIIIS-----------ATNETKQRNDLVGELENVS-LQSRAESNLLMGDEYTQTVQSLI 167
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP-EQTAVPPVARASAGGQAGNPPAQT 239
+MG + RE V RA+ A++NNPERAVEYL +G+P E + V S NP
Sbjct: 168 EMG---YPREQVERAMSASFNNPERAVEYLINGLPAEDENIFHVDEEST-----NPSLVQ 219
Query: 240 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQI 299
Q + T + D F +FLR+ QF +R+++ NP +
Sbjct: 220 SGPQNISALSTGHSTGSSSDPF----------------EFLRSQPQFLQMRSLIYQNPHL 263
Query: 300 LQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEG 338
L +LQ++G+ NP L++LI E+Q FL ++N+P+E G
Sbjct: 264 LHAVLQQIGQTNPALLQLISENQDAFLNMLNQPIENDSG 302
>gi|430811680|emb|CCJ30877.1| unnamed protein product [Pneumocystis jirovecii]
Length = 1394
Score = 144 bits (363), Expect = 6e-32, Method: Composition-based stats.
Identities = 122/379 (32%), Positives = 182/379 (48%), Gaps = 68/379 (17%)
Query: 1 MKVFVKTLKGTHFEIE-VKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTL 59
MK+ K LK F I+ V P + VK+ I+ VQG D+ Q LI+ GK+L D T+
Sbjct: 1040 MKLTFKDLKQQKFTIDNVDPRCTILQVKEMIQEVQGHDL---KHQKLIYSGKILLDSNTV 1096
Query: 60 EENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTV 119
E + E F+V M+ K K Q P+ ++
Sbjct: 1097 ESYDIKEKDFIVCMVQKPK----------------------------------QVPSASI 1122
Query: 120 APPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQI 179
+V + P A AP + P + VSS S+ + S LV G + ++ +
Sbjct: 1123 VAESTVSTNQSDPKASAPETSLPSVPGTS---VSSSSETFNDPNS-LVVGLLCDTAIKNM 1178
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 239
++MG ++R V A+RAA+NNP+RAVEYL +GIPE + + ++S+ Q
Sbjct: 1179 MEMG---YERTQVENAMRAAFNNPDRAVEYLLTGIPEHLSRELLQQSSSSQQVSRAQQIV 1235
Query: 240 QAQQPAAPAPTSGPNANPLDLFPQ-------------GLPNMGSNAGAGTLDFLRNSQQF 286
Q+ + P T + N +L Q G MGSN A +L FLRN+ QF
Sbjct: 1236 QSTPTSTPTSTPSRSENLFELAAQVSQQGRERLNTSSGNSLMGSN-NAESLAFLRNNPQF 1294
Query: 287 QALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLAS 346
LR +VQ PQ+L+ +LQ+LG+ N L LI ++ FL+L++E +E G+G +
Sbjct: 1295 LMLRRLVQTQPQMLESVLQQLGQGNLQLATLINQNSDAFLQLLSEGME-GDG------TA 1347
Query: 347 AMPQAV--TVTPEEREAIE 363
AMP V +T EER+AIE
Sbjct: 1348 AMPNIVQLQLTEEERQAIE 1366
>gi|357621015|gb|EHJ73001.1| nuclear excision repair protein rad23 [Danaus plexippus]
Length = 323
Score = 144 bits (363), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 117/370 (31%), Positives = 175/370 (47%), Gaps = 91/370 (24%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + +KTL+ F+IE+ P++ V +K IE +G D Y A Q LI+ GK+L D L
Sbjct: 1 MLLTLKTLQQQTFQIEIDPQETVKALKLKIEVEKGKD-YAADNQRLIYAGKILLDDNKLH 59
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ E F+V+M+TK K S NQ +++SAP +T S V
Sbjct: 60 TYNIDEKKFIVIMVTKPKTSD-----------NQQASSTSAPEAGESASTESGDGKSKVV 108
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
+ P P PA P A P PV+S + E+TVQ I+
Sbjct: 109 EEK-----------PKPQPAAEPERASEP-PVTS-------------NEPDFESTVQSIM 143
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
DMG ++R+ V +ALRA++NN ERAVEYL +GIPE+ A SA
Sbjct: 144 DMG---YNRQQVEQALRASFNNRERAVEYLITGIPEELLQEQEAEESA------------ 188
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQIL 300
+ +P L FLR+ QFQ +R ++Q NP +L
Sbjct: 189 -------------DEDP-------------------LGFLRDQPQFQQMRAVIQQNPNLL 216
Query: 301 QPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLA---SAMPQ----AVT 353
+LQ++G+ NP L++ I +HQ F+R++NEPV + + A + +PQ +
Sbjct: 217 NTVLQQIGQTNPALLQAISQHQQAFVRMLNEPVNPSAAGAVAEEAVPDNPVPQQPQNVIQ 276
Query: 354 VTPEEREAIE 363
V+P+++EAIE
Sbjct: 277 VSPQDKEAIE 286
>gi|384493836|gb|EIE84327.1| UV excision repair protein Rad23 [Rhizopus delemar RA 99-880]
Length = 386
Score = 144 bits (362), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 121/379 (31%), Positives = 186/379 (49%), Gaps = 51/379 (13%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+++ VKTL+ F+++V D + VK+ I+ QG + +QQ LI GK+L D +E
Sbjct: 4 LQITVKTLQQKQFKLDVDSSDTILSVKEKIQESQG---HAVAQQKLIFSGKILVDDKKVE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ + E F+VVM+ K+K + + +S +++ + ++ + P T P A T
Sbjct: 61 DYNITEKDFLVVMVAKAKATPASSSAAASSASTPKESATQEKPAETAPKPAETAAAATTP 120
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
+ P S P PA PA ++ + S LV GS LE+ V+ ++
Sbjct: 121 SNIASPASEP------------PASTPAAPTETTTTATPADTFSQLVTGSQLESVVENMM 168
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
MG ++R RALRA++NNP+RAVEYL++GIPE + +A Q Q +
Sbjct: 169 SMG---FERAQCERALRASFNNPDRAVEYLFNGIPEHI----LNEMNAAQQ------QPE 215
Query: 241 AQQPAAPAPTSGPNANP----LDLF----------PQGLPNMGSNAGAGTLDFLRNSQQF 286
QQ + PNAN ++LF Q + +L RN+ F
Sbjct: 216 VQQDTNTQSPTTPNANDANASMNLFAAAQQHAQQQQQQQQQEQNQNLNASLANFRNTPHF 275
Query: 287 QALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLAS 346
Q +R +VQ NP +LQP+LQ +G+ NP L+R I FL+ E EG EG +G
Sbjct: 276 QQIRQLVQTNPALLQPLLQSIGQSNPELIRAINADPNAFLQAFLEGAEGEEG-AMG---- 330
Query: 347 AMPQAVT--VTPEEREAIE 363
P+ T VTPEER+AI+
Sbjct: 331 --PETTTIQVTPEERDAID 347
>gi|195172518|ref|XP_002027044.1| GL18167 [Drosophila persimilis]
gi|194112822|gb|EDW34865.1| GL18167 [Drosophila persimilis]
Length = 430
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 116/349 (33%), Positives = 177/349 (50%), Gaps = 52/349 (14%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + VK L+ F IE PE V ++KK I +G + Y A +Q LI+ G +L D T+
Sbjct: 1 MIITVKNLQQQTFTIEFDPEKTVLELKKKIFDERGVE-YVAEKQKLIYAGVILMDDRTIA 59
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAA---PANQAQTTSSAPPTSTQPTTTSQTPAP 117
K+ E F+VVMLT+ +S+ AS+ S N+A+ + + T +S + +
Sbjct: 60 SYKIDEKKFIVVMLTRDTAASTAASSTSDTQPKRTNEAEGKLFEKEKNIEKTISSTSGS- 118
Query: 118 TVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQ---------AASNLVA 168
P ESAP + + A P SS SD+ G+ A SNL+
Sbjct: 119 --TPISGAVESAPSVSVSSTGTA-------IQRPYSS-SDLVGELANASLQTRAESNLLM 168
Query: 169 GSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASA 228
G TV +++MG + R+ V RA+ A++NNPERAVEYL +GIP + + +A
Sbjct: 169 GEEYNKTVLSMVEMG---YPRDQVERAMGASFNNPERAVEYLINGIPTEDE----SLFNA 221
Query: 229 GGQAGNPPAQTQAQQPAAPA--PTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQF 286
G + N Q P AP P S P + LP S+ +FLR+ QF
Sbjct: 222 GDETNN-------QNPRAPGSQPISEPAVD--------LPAQSSDP----FEFLRSQPQF 262
Query: 287 QALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEG 335
+R+++ NP +L +LQ++G+ NP L++LI E+Q FL ++N+P+EG
Sbjct: 263 LQMRSLIYQNPHLLHAVLQQIGQTNPALLQLISENQDAFLNMLNQPIEG 311
>gi|126002609|ref|XP_001352382.1| GA14903 [Drosophila pseudoobscura pseudoobscura]
gi|54640152|gb|EAL29275.1| GA14903 [Drosophila pseudoobscura pseudoobscura]
Length = 430
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 116/349 (33%), Positives = 177/349 (50%), Gaps = 52/349 (14%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + VK L+ F IE PE V ++KK I +G + Y A +Q LI+ G +L D T+
Sbjct: 1 MIITVKNLQQQTFTIEFDPEKTVLELKKKIFDERGVE-YVAEKQKLIYAGVILMDDRTIA 59
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAA---PANQAQTTSSAPPTSTQPTTTSQTPAP 117
K+ E F+VVMLT+ +S+ AS+ S N+A+ + + T +S + +
Sbjct: 60 SYKIDEKKFIVVMLTRDTAASTAASSTSDTQPKRTNEAEGKLFEKEKNIEKTISSTSGS- 118
Query: 118 TVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQ---------AASNLVA 168
P ESAP + + A P SS SD+ G+ A SNL+
Sbjct: 119 --TPISGAVESAPSVSVSSTGTA-------IQRPYSS-SDLVGELANASLQTRAESNLLM 168
Query: 169 GSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASA 228
G TV +++MG + R+ V RA+ A++NNPERAVEYL +GIP + + +A
Sbjct: 169 GEEYNKTVLSMVEMG---YPRDQVERAMGASFNNPERAVEYLINGIPTEDE----SLFNA 221
Query: 229 GGQAGNPPAQTQAQQPAAPA--PTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQF 286
G + N Q P AP P S P + LP S+ +FLR+ QF
Sbjct: 222 GDETNN-------QNPRAPGSQPISEPAVD--------LPAQSSDP----FEFLRSQPQF 262
Query: 287 QALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEG 335
+R+++ NP +L +LQ++G+ NP L++LI E+Q FL ++N+P+EG
Sbjct: 263 LQMRSLIYQNPHLLHAVLQQIGQTNPALLQLISENQDAFLNMLNQPIEG 311
>gi|195450799|ref|XP_002072638.1| GK13711 [Drosophila willistoni]
gi|194168723|gb|EDW83624.1| GK13711 [Drosophila willistoni]
Length = 420
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 111/340 (32%), Positives = 169/340 (49%), Gaps = 42/340 (12%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + VK L+ F I+ PE V ++KK I +G++ P Q+ LI+ G +L D +
Sbjct: 1 MIITVKNLQQQTFTIDFDPEKTVLELKKKIFEERGAEYLPEKQK-LIYAGVILVDDRKIS 59
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
KV E F+VVMLT+ SS +ST ++ A+ +P+ P PT
Sbjct: 60 SYKVDEKKFIVVMLTRDAAPSSASSTTASTSEKVAE----------KPSEKKTNPEPTPT 109
Query: 121 PPQSVPESAPPPAAPAPAPA-----PAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEAT 175
P SAP PA+ A + A +P +P + +D +A S+L+ G T
Sbjct: 110 APSPAAVSAPVPASVASSGASGTTSDSPNTETTVSPTAPSTD-QTRAESSLLMGEEYNRT 168
Query: 176 VQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNP 235
V +++MG + RE V RA+ A++NNPERAVEYL +GIP +
Sbjct: 169 VSSMVEMG---YPREQVERAMAASFNNPERAVEYLINGIPAE------------------ 207
Query: 236 PAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQA 295
+ Q P S PN D P+ S A +FLR+ QF +R+++
Sbjct: 208 --EDQLFNDTDPTSQSNPNPRVADASSINAPSGRSTADP--FEFLRSQPQFLQMRSLIYQ 263
Query: 296 NPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEG 335
NPQ+L +LQ++G+ NP L++LI E+Q FL ++N+P+EG
Sbjct: 264 NPQLLDAVLQQIGQTNPALLQLISENQDAFLNMLNQPLEG 303
>gi|213402873|ref|XP_002172209.1| UV excision repair protein RAD23 [Schizosaccharomyces japonicus
yFS275]
gi|212000256|gb|EEB05916.1| UV excision repair protein RAD23 [Schizosaccharomyces japonicus
yFS275]
Length = 373
Score = 142 bits (357), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 122/370 (32%), Positives = 184/370 (49%), Gaps = 46/370 (12%)
Query: 1 MKVFVKTLKGTHFEI-EVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTL 59
M++ K L+ F + +V P+ V +VK+ I+ QG Y +Q LI+ G++L D T+
Sbjct: 1 MQLTFKNLQQQKFVVPDVDPKTTVLEVKQKIKEQQG---YEVERQKLIYSGRILADDKTV 57
Query: 60 EENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTV 119
EE + E F+V M VS APA++ +T + +TT TP T
Sbjct: 58 EEYDIKEKDFIVCM-------------VSRAPASKVKTEQKTE--EKKQSTTESTPLNT- 101
Query: 120 APPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQI 179
++ P PAP P A A + + + G S+LV G+ A + +
Sbjct: 102 --------TSTSPKTPAPESVPEQTQPAAVAAAPTAAPIVGD--SSLVLGAQRNAVIDNM 151
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 239
++MG ++R V A+RAA+NNP+RAVEYL +GIPE +A A
Sbjct: 152 VEMG---YERSQVELAMRAAFNNPDRAVEYLLNGIPESVRQAQEQEQAAAAAAATAATNA 208
Query: 240 QAQQ-PAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGT-----LDFLRNSQQFQALRTMV 293
A AAPA ++ P A P +LF Q + +G L FLR QFQ LR +V
Sbjct: 209 TAASGNAAPANSTQPAA-PGNLFEQAAAHAQGEEESGASGEDPLGFLRELPQFQQLRQIV 267
Query: 294 QANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVT 353
Q NPQ+L+ +LQ++G+ NP L ++I ++ FL+L+ E V+G G L Q +
Sbjct: 268 QQNPQMLEGILQQIGESNPALAQIISQNPEAFLQLLAEGVDGE-----GVLPPGTIQ-IE 321
Query: 354 VTPEEREAIE 363
+TPEE ++IE
Sbjct: 322 ITPEENQSIE 331
>gi|74224982|dbj|BAE38204.1| unnamed protein product [Mus musculus]
Length = 322
Score = 141 bits (355), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 112/330 (33%), Positives = 165/330 (50%), Gaps = 47/330 (14%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D ++E
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIKEY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
+ E +FVVVM+TK+K A AP + T P T P S P PP
Sbjct: 65 HIDEKNFVVVMVTKAK-----AGQGIPAPPEASPTAVPEPSTPFPPVLASGMSHP---PP 116
Query: 123 QSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILDM 182
S + +P + +P P S S AAS LV GS E + +I+ M
Sbjct: 117 TSREDKSP---SEESTTTTSPESISGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSM 173
Query: 183 GGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQ 242
G ++RE V+ ALRA+YNNP RAVEYL +GIP S + G+ +
Sbjct: 174 G---YERERVVAALRASYNNPHRAVEYLLTGIP----------GSPEPEHGSVQESQAPE 220
Query: 243 QPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQP 302
QPA A AG L+FLR+ QFQ +R ++Q NP +L
Sbjct: 221 QPATEA-----------------------AGENPLEFLRDQPQFQNMRQVIQQNPALLPA 257
Query: 303 MLQELGKQNPHLMRLIQEHQTDFLRLINEP 332
+LQ+LG++NP L++ I HQ F++++NEP
Sbjct: 258 LLQQLGQENPQLLQQISRHQEQFIQMLNEP 287
>gi|195402315|ref|XP_002059752.1| GJ16257 [Drosophila virilis]
gi|194155966|gb|EDW71150.1| GJ16257 [Drosophila virilis]
gi|263359664|gb|ACY70500.1| hypothetical protein DVIR88_6g0037 [Drosophila virilis]
Length = 448
Score = 140 bits (354), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 106/358 (29%), Positives = 171/358 (47%), Gaps = 53/358 (14%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + VK L+ F I+ PE V ++K+ I +G++ Y +Q LI+ G +L D T+
Sbjct: 1 MIITVKNLQQQTFTIDFDPEKTVLELKRQIFNERGAE-YFVEKQKLIYAGVILTDDRTIN 59
Query: 61 ENKVAENSFVVVMLTKS-------KVSSSGASTVSAAPAN-QAQTTS-----------SA 101
KV E F+VVMLT+ +++ VS+ A QA+ T+ S
Sbjct: 60 SYKVDEKKFIVVMLTRDISGTSSGSSNNTNTEAVSSQQARKQAKETTERSTQDEPLVESK 119
Query: 102 PPTSTQPTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYG- 160
P + +++S+ A T E A +PAPA + + V ++
Sbjct: 120 PAVQVKESSSSKKGAKTNKITSEAGEEVGSTGAGSPAPASTTGSTTDYSSIDLVGELANT 179
Query: 161 ----QAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE 216
+A SNL+ G TV +++MG + RE V RA+ A++NNPERAVEYL +GIP+
Sbjct: 180 SLQTRAESNLLMGEEFNRTVASMVEMG---YPREQVERAMAASFNNPERAVEYLINGIPQ 236
Query: 217 QTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGT 276
+ + +A N + PA A A+P +
Sbjct: 237 EENLFTPGDDEESSRASNIHQGAASDLPAESA------ADPFE----------------- 273
Query: 277 LDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVE 334
FLR+ QF +R+++ NP +L +LQ++G+ NP L++LI E+Q FL ++N+P+E
Sbjct: 274 --FLRSQPQFLQMRSLIYQNPHLLHAVLQQIGQTNPALLQLISENQDAFLNMLNQPLE 329
>gi|145351567|ref|XP_001420144.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144580377|gb|ABO98437.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 361
Score = 140 bits (354), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 86/172 (50%), Positives = 110/172 (63%), Gaps = 20/172 (11%)
Query: 164 SNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPV 223
S LV+G+ LEA V QI+ MG ++RE V+ A+RAA+NNP+RAVEYL +GIPE +
Sbjct: 129 SGLVSGAELEAAVTQIMTMG---FEREQVMNAMRAAFNNPDRAVEYLLTGIPETS----- 180
Query: 224 ARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNM-GSNAGAG-TLDFLR 281
QA A A P A A G N L+LFP+G+P+M G +G G LDFLR
Sbjct: 181 -------QAPPAAAAPAADAPDASAALGG---NALNLFPEGIPDMAGDRSGDGQMLDFLR 230
Query: 282 NSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPV 333
++ QFQA+R MVQ P ILQPML EL +QNP L LI +Q +FL L+NEP+
Sbjct: 231 DNPQFQAIRAMVQGQPHILQPMLAELQRQNPQLYHLINNNQEEFLALLNEPL 282
>gi|91085045|ref|XP_974357.1| PREDICTED: similar to putative RAD23-like B [Tribolium castaneum]
gi|270009030|gb|EFA05478.1| hypothetical protein TcasGA2_TC015662 [Tribolium castaneum]
Length = 334
Score = 140 bits (353), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 114/336 (33%), Positives = 168/336 (50%), Gaps = 78/336 (23%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ V+ L +F I ++P V D+K+ IE +G D Y Q LI++GK+LKD L
Sbjct: 1 MKITVRNLYQKNFIIHIEPSKTVKDLKQQIEAEKGKD-YRWDYQRLIYRGKILKDEAPLS 59
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E + E+ F+V+M++K SG + V+ +S ++TQP+ T
Sbjct: 60 EYNIDEDKFIVIMVSKP---DSGTTEVA----------NSGDNSATQPSATPAAAPAP-- 104
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
A APAPV+ S++ +A S L+ G E VQ I+
Sbjct: 105 -----------------------AAPAAPAPVAPASNLSSEAESALLMGEEYENMVQNIV 141
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
DMG + R+ V +ALRA+YNNP+RAVEYL +GIP A G+
Sbjct: 142 DMG---YPRDQVEQALRASYNNPDRAVEYLINGIP------------AMGE--------- 177
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQIL 300
Q AAP+ + G+ S+A + L FLR+ QFQ ++ +VQ NPQ+L
Sbjct: 178 -DQEAAPSMS-------------GIDERQSDA-SDPLAFLRSQPQFQQMKQVVQQNPQLL 222
Query: 301 QPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG 336
+LQ+LG+ NP L+ LI ++Q F+RL+NEP G
Sbjct: 223 NAVLQQLGQTNPALLNLISQNQESFVRLLNEPSAGA 258
>gi|297286975|ref|XP_001085658.2| PREDICTED: UV excision repair protein RAD23 homolog B [Macaca
mulatta]
Length = 406
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 133/395 (33%), Positives = 190/395 (48%), Gaps = 56/395 (14%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V +KTL+ F+I++ PE+ V +K+ IE+ + + P + Q LI+ G++L D L+
Sbjct: 1 MQVTLKTLQPQSFKIDIDPEETVKALKEKIESEKAKEASPVAGQKLIYAGEILNDDAALK 60
Query: 61 ENKVAENSFVV--VMLTKSKVSSS--GASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPA 116
E K+ E FVV VM+TK K S+ A+T +APA+ TSS T Q T A
Sbjct: 61 EYKIDEKIFVVVMVMVTKPKAVSTPAPATTQQSAPASTTAVTSSTATTVAQAPTPVLALA 120
Query: 117 PTVAPPQSVPESAPPPAAPAPAPA---PAPAPAPAPAPV-------------SSVSDVYG 160
T P P S + PAPA A A PA PV SS S+++
Sbjct: 121 TTFTPAFITPVSVTVSSEPAPASATKQKKAAEKPAETPVATRLTSTDCTLXDSSWSNLFE 180
Query: 161 QAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP---EQ 217
A S LV G E V +I MG ++ E VI A RA++ N +RAVE L GIP Q
Sbjct: 181 DATSALVTGQPYENMVTEITPMG---YEXEQVIAAPRASFKNLDRAVECLVMGIPGVKXQ 237
Query: 218 TAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTL 277
V P AS G + A A A +SG + L
Sbjct: 238 VVVDPHQAASTGVPQSSTLAAVAATTTATTTTSSGXHP---------------------L 276
Query: 278 DFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGE 337
+FL N QFQ +R ++Q N +L +LQ +G +NP L++ I +H+ F++++NEPV +
Sbjct: 277 EFLWNQPQFQQMRQIIQQNTSLLPALLQXIGGENPQLLQQISQHKEHFIQMLNEPVXEAD 336
Query: 338 GNVLGQLASAMPQA---------VTVTPEEREAIE 363
G G + A + VTP+E+EAIE
Sbjct: 337 GRGGGGGGGSGGIAEPGNGPMNYIQVTPQEKEAIE 371
>gi|358333357|dbj|GAA51877.1| UV excision repair protein RAD23 [Clonorchis sinensis]
Length = 504
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 118/359 (32%), Positives = 174/359 (48%), Gaps = 84/359 (23%)
Query: 22 KVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSS 81
+VSDVKK IE +G++ + AS Q LIH GKV++D TL++ KV + F+VVM
Sbjct: 136 QVSDVKKKIEAEKGNE-FSASSQTLIHSGKVMEDEKTLKQYKVTDKGFIVVMAV------ 188
Query: 82 SGASTVSAAPANQAQTTSSAPPTSTQPTTTSQT-PAPTVAPPQ--SVPESAPPPAAPAPA 138
+ P+ + + P + +P + Q+ PA TVA Q +VP S P AA
Sbjct: 189 -------SKPSKEPTASVEKLPEAAKPVQSEQSIPANTVASVQETTVPRSDVPAAA---- 237
Query: 139 PAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRA 198
P S+ + S LV G+ E + +I+ MG ++R VIRA+RA
Sbjct: 238 -----------GPESATGE------SALVTGAEYERAISEIVGMG---FERSMVIRAMRA 277
Query: 199 AYNNPERAVEYLYSG-IPEQTAVPPVARASAGGQAG-NPPAQTQAQQPAAPAPTSGPNAN 256
++NNP+RAVEYL SG IP V AGG+ + P + A+ +P+S +
Sbjct: 278 SFNNPDRAVEYLLSGNIPNAV----VREQPAGGRERVDTPGD---EHSASESPSSEDPIS 330
Query: 257 PLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMR 316
L PQ FQ +R +VQANP++L ++Q++G N L+R
Sbjct: 331 ALASLPQ----------------------FQQMRALVQANPELLPQLIQQIGADNSELLR 368
Query: 317 LIQEHQTDFLRLINEP----------VEGGEGNVLGQLASAMPQAV--TVTPEEREAIE 363
LIQE++ FL +N P +E E G + P+ + T+T EER AIE
Sbjct: 369 LIQENEQGFLEFLNAPISQDAGEPEGIESSETTTPGNVRQGEPRQIILTMTQEERAAIE 427
>gi|195354361|ref|XP_002043666.1| GM26792 [Drosophila sechellia]
gi|194128854|gb|EDW50897.1| GM26792 [Drosophila sechellia]
Length = 414
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 103/338 (30%), Positives = 161/338 (47%), Gaps = 44/338 (13%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + +K L+ F IE PE V ++KK I +GS+ Y A +Q LI+ G +L D T+
Sbjct: 1 MIITIKNLQQQTFTIEFAPEKTVLELKKKIFDERGSE-YVAEKQKLIYAGVILTDDRTVG 59
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
V E F+VVMLT+ S + NQ S TST + S
Sbjct: 60 SYNVDEKKFIVVMLTRDS---------SYSNRNQLSVKESDKLTSTDDSRHSM------- 103
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAP--VSSVS--DVYGQAASNLVAGSNLEATV 176
P + S P + P P+ + ++ + +A SNL+ G TV
Sbjct: 104 PCEEANHSNSPSCRNTDDSVLSRETRPLPSDELIGELAQASLQSRAESNLLMGDEYNQTV 163
Query: 177 QQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPP 236
+++MG + RE V RA+ A+YNNPERAVEYL +GIP + + ++ NP
Sbjct: 164 LSMVEMG---YPREQVERAMAASYNNPERAVEYLINGIPAEEGTF----YNGLNESTNPS 216
Query: 237 AQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQAN 296
Q A+ T P +++ + +FLR+ QF +R+++ N
Sbjct: 217 LIPSGPQTASATSTERP----------------ADSNSDPFEFLRSQPQFLQMRSLIYQN 260
Query: 297 PQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVE 334
P +L +LQ++G+ NP L++LI E+Q FL ++N+P+E
Sbjct: 261 PHLLHAVLQQIGQTNPALLQLISENQDAFLNMLNQPIE 298
>gi|194213056|ref|XP_001914974.1| PREDICTED: UV excision repair protein RAD23 homolog A-like [Equus
caballus]
Length = 393
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 121/360 (33%), Positives = 172/360 (47%), Gaps = 78/360 (21%)
Query: 23 VSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSSS 82
V +K+ IE +G D +P + Q LI+ GK+L D + + ++ E +FVVVM+TK+K S
Sbjct: 55 VKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKAKTS-- 112
Query: 83 GASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAP---TVAPPQSVPESAPPPAAPAPAP 139
P+S P TS T AP T PP + PP AP
Sbjct: 113 --------------------PSSAVPPETSPTAAPESSTTFPPAPASGMSHPPPAPREDK 152
Query: 140 APAPAPAPAPAPVSSVSDVYG--------QAASNLVAGSNLEATVQQILDMGGGSWDRET 191
+P+ PA +P S V AAS LV GS E + +I+ MG ++RE
Sbjct: 153 SPSEESIPATSPESVSGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSMG---YERER 209
Query: 192 VIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTS 251
V+ ALRA+YNNP RAVEYL +GIP S + G+ ++QP A
Sbjct: 210 VVAALRASYNNPHRAVEYLLTGIP----------GSPEPEHGSVQESQVSEQPTTEA--- 256
Query: 252 GPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQN 311
AG L+FLR+ QFQ +R ++Q NP +L +LQ+LG++
Sbjct: 257 --------------------AGENPLEFLRDQPQFQNMRQVIQQNPALLPALLQQLGQET 296
Query: 312 PHLMRLIQEHQTDFLRLINEP------VEGGEGNVLGQLASAMPQA--VTVTPEEREAIE 363
L + I HQ F++++NEP + EG V G + PQ + VTP+E+EAIE
Sbjct: 297 LSLPQQISRHQEQFIQMLNEPPGELADISDVEGEV-GAIGEEAPQMNYIQVTPQEKEAIE 355
>gi|332025640|gb|EGI65802.1| UV excision repair protein RAD23-like protein B [Acromyrmex
echinatior]
Length = 360
Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 105/334 (31%), Positives = 155/334 (46%), Gaps = 67/334 (20%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + +K L+ F IE+ V D+K+ IET +G +PA Q LI+ GK+L D L
Sbjct: 1 MIITLKNLQQQTFTIEIDSLQTVKDLKEKIETQKG---FPAEHQKLIYAGKILADEQPLA 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E + E F+VVM+TK K T + P TS + T + +
Sbjct: 58 EYNIDEKKFIVVMVTKPK-------------------TGATPKTSEEQRTEGDKKEESTS 98
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
+ P S P A + A AP + ++ S L+ G + V I+
Sbjct: 99 SATTQPSSNPNVQDTTRAASNVQEQPVAAAPAAGQAE------SALLMGEDYNTMVNNIM 152
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
DMG ++RE V++ALRA++NNP+RAVEYL +GIP Q P +PP +
Sbjct: 153 DMG---YEREQVVQALRASFNNPDRAVEYLITGIPAQLFEDP---------PEDPPEAQE 200
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQIL 300
Q + P L FLR QFQ +R ++Q NPQ+L
Sbjct: 201 QLQDQSQDP---------------------------LAFLRLQPQFQQMRQVIQQNPQLL 233
Query: 301 QPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVE 334
+LQ++G NP L++LI ++Q F+R++NEP E
Sbjct: 234 NNLLQQIGSTNPALLQLISQNQETFVRMLNEPAE 267
>gi|327493259|gb|AEA86336.1| putative DNA repair protein [Solanum nigrum]
Length = 172
Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 73/117 (62%), Positives = 90/117 (76%), Gaps = 1/117 (0%)
Query: 248 APTSG-PNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQE 306
AP+SG PN+ PL+LFPQ AG G+LDFL N+QQFQALR+MVQANPQIL+PMLQE
Sbjct: 18 APSSGTPNSAPLNLFPQENVAGAGGAGLGSLDFLMNNQQFQALRSMVQANPQILRPMLQE 77
Query: 307 LGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEEREAIE 363
LGKQNP L+R IQEH +FL+LINEPV+G +G++ +P V+VTPEE+E IE
Sbjct: 78 LGKQNPQLLRSIQEHDQEFLQLINEPVDGSDGDMFDLADQEIPHTVSVTPEEQEVIE 134
>gi|194913607|ref|XP_001982736.1| GG16385 [Drosophila erecta]
gi|190647952|gb|EDV45255.1| GG16385 [Drosophila erecta]
Length = 414
Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 104/337 (30%), Positives = 160/337 (47%), Gaps = 42/337 (12%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + +K L+ F IE PE V ++KK I +G + Y A +Q LI+ G +L D T++
Sbjct: 1 MIITIKNLQQQTFTIEFAPEKTVLELKKKIFDERGPE-YVAEKQKLIYAGVILTDDRTVD 59
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTS---QTPAP 117
V + F+VVMLT+ SS+ NQ S ST + S +
Sbjct: 60 SYNVDDKKFIVVMLTRDSSSSN---------PNQLSVKESDKLISTDDSKDSMPGEEANH 110
Query: 118 TVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQ 177
+ +P E + P+ P A A + S +A SNL+ G TV
Sbjct: 111 SNSPCTKNTEESVLPSETTPLSTDNLIGDLAQASLQS------RAESNLLMGEEYNQTVL 164
Query: 178 QILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPA 237
+++MG + RE V RA+ A+YNNPERAVEYL +GIPE+ + ++ NP
Sbjct: 165 SMVEMG---YPREEVERAMAASYNNPERAVEYLINGIPEEEGTID----NGVNESTNPSV 217
Query: 238 QTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANP 297
Q + + P + D F +FLR QF +R+++ NP
Sbjct: 218 IASGPQTVSASSVERPAESNSDPF----------------EFLRRQPQFLQMRSLIYQNP 261
Query: 298 QILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVE 334
+L +LQ++G+ NP L++LI E+Q FL ++N+P+E
Sbjct: 262 HLLHAVLQQIGQTNPALLQLISENQDAFLNMLNQPIE 298
>gi|444725253|gb|ELW65827.1| UV excision repair protein RAD23 like protein B [Tupaia chinensis]
Length = 367
Score = 138 bits (348), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 125/373 (33%), Positives = 188/373 (50%), Gaps = 54/373 (14%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V +KT + F+I++ PE+ V +K+ IE+ +G D +P Q LI+ G++LKD T L+
Sbjct: 1 MQVTLKTPQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVEDQKLIYAGEILKDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E + E V+ SK ++ VS++P A T ++ P S + TS PAP
Sbjct: 61 EYNIEEKDSVL-----SKPATD--FLVSSSPGTPASTPAAVTPASRR---TSSEPAP--- 107
Query: 121 PPQSVPESAPPPAAPAPAP-APAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQI 179
E PP A AP A P A +S S++ A L G + + V +I
Sbjct: 108 ------EQEQPPEELADAPVATGPTSTGWTAGDASASNMLAGATGALTPGQSYQDMVSEI 161
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 239
+ MG +++ VI ALRA++N+P RAVEYL +GIP VA G PP+
Sbjct: 162 MSMG---YEQAQVIAALRASFNDPHRAVEYLLTGIPGDRGSDTVADLPRAASMGAPPS-- 216
Query: 240 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQI 299
PA+ T+ ++ P+G P L+FL+N QFQ LR ++ NP +
Sbjct: 217 ----PASATSTAMASS------PEGTP----------LEFLQNQLQFQQLRQTIRQNPSL 256
Query: 300 LQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVL---------GQLASAMPQ 350
L +LQ+LG + PHL++LI ++Q F+++++EPV G Q
Sbjct: 257 LPMLLQQLGLRGPHLLQLISQYQEHFIQMLHEPVPEAGGQSGVGGAGDAGTAQAGHGQAN 316
Query: 351 AVTVTPEEREAIE 363
V VTP+EREAIE
Sbjct: 317 YVRVTPQEREAIE 329
>gi|4928709|gb|AAD33695.1|AF136606_1 DHR23 [Drosophila melanogaster]
Length = 414
Score = 138 bits (348), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 100/335 (29%), Positives = 166/335 (49%), Gaps = 38/335 (11%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + +K L+ F IE PE V ++KK I +G + Y A +Q LI+ G +L D T+
Sbjct: 1 MIITIKNLQQQTFTIEFAPEKTVLELKKKIFEERGPE-YVAEKQKLIYAGVILTDDRTVG 59
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTS-TQPTTTSQTPAPTV 119
V E F+VVMLT+ SSS + +S +N+ +T + + + + +P+ T
Sbjct: 60 SYNVDEKKFIVVMLTRDS-SSSNRNQLSVKESNKLTSTDDSKQSMPCEEANHTNSPSSTN 118
Query: 120 APPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQI 179
+ P ++ A A + +A SNL+ G TV +
Sbjct: 119 TEDSVLSRETRPLSSDELIGELAQAS------------LQSRAESNLLMGDEYNQTVLSM 166
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 239
++MG + RE V RA+ A+YNNPERAVEYL +GIP + + ++ NP
Sbjct: 167 VEMG---YPREQVERAMAASYNNPERAVEYLINGIPAEEGT----FYNRLNESTNP---- 215
Query: 240 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQI 299
+ P+ P P S +A + + + +FLR+ QF +R+++ NP +
Sbjct: 216 -SLIPSGPQPASATSAE-----------RSTESNSDPFEFLRSQPQFLQMRSLIYQNPHL 263
Query: 300 LQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVE 334
L +LQ++G+ NP L++LI E+Q FL ++N+P++
Sbjct: 264 LHAVLQQIGQTNPALLQLISENQDAFLNMLNQPID 298
>gi|24638591|ref|NP_651918.2| Rad23, isoform A [Drosophila melanogaster]
gi|442614351|ref|NP_001259052.1| Rad23, isoform C [Drosophila melanogaster]
gi|4928456|gb|AAD33594.1|AF132147_1 DNA repair protein Rad23 [Drosophila melanogaster]
gi|7304320|gb|AAF59352.1| Rad23, isoform A [Drosophila melanogaster]
gi|220942642|gb|ACL83864.1| Rad23-PA [synthetic construct]
gi|440218136|gb|AGB96542.1| Rad23, isoform C [Drosophila melanogaster]
Length = 414
Score = 138 bits (348), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 102/334 (30%), Positives = 167/334 (50%), Gaps = 36/334 (10%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + +K L+ F IE PE V ++KK I +G + Y A +Q LI+ G +L D T+
Sbjct: 1 MIITIKNLQQQTFTIEFAPEKTVLELKKKIFEERGPE-YVAEKQKLIYAGVILTDDRTVG 59
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
V E F+VVMLT+ SSS + +S +N+ +T ++ + + T +
Sbjct: 60 SYNVDEKKFIVVMLTRDS-SSSNRNQLSVKESNKLTSTDD-----SKQSMPCEEANHTNS 113
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P + E + P + A A + S +A SNL+ G TV ++
Sbjct: 114 PSSTNTEDSVLSRETRPLSSDELIGELAQASLQS------RAESNLLMGDEYNQTVLSMV 167
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
+MG + RE V RA+ A+YNNPERAVEYL +GIP + + ++ NP
Sbjct: 168 EMG---YPREQVERAMAASYNNPERAVEYLINGIPAEEGT----FYNRLNESTNP----- 215
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQIL 300
+ P+ P P S +A + + + +FLR+ QF +R+++ NP +L
Sbjct: 216 SLIPSGPQPASATSAE-----------RSTESNSDPFEFLRSQPQFLQMRSLIYQNPHLL 264
Query: 301 QPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVE 334
+LQ++G+ NP L++LI E+Q FL ++N+P++
Sbjct: 265 HAVLQQIGQTNPALLQLISENQDAFLNMLNQPID 298
>gi|392996951|ref|NP_001257292.1| UV excision repair protein RAD23 homolog A isoform 3 [Homo sapiens]
gi|426387415|ref|XP_004060164.1| PREDICTED: UV excision repair protein RAD23 homolog A isoform 2
[Gorilla gorilla gorilla]
Length = 308
Score = 137 bits (346), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 114/322 (35%), Positives = 167/322 (51%), Gaps = 61/322 (18%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
++ E +FVVVM+TK+K +G T SA P A PT+ ++TS PAPT
Sbjct: 65 RIDEKNFVVVMVTKTK---AGQGT-SAPP--------EASPTAAPESSTSFPPAPTSG-- 110
Query: 123 QSVPESAPPPAA---PAPAPAPAPAPAPAPAPVSSVSDVYG----QAASNLVAGSNLEAT 175
S PPPAA +P+ AP +P S S AAS LV GS E
Sbjct: 111 ----MSHPPPAAREDKSPSEESAPTTSPESVSGSVPSSGSSGREEDAASTLVTGSEYETM 166
Query: 176 VQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNP 235
+ +I+ MG ++RE V+ ALRA+YNNP RAVEYL +GIP S + G+
Sbjct: 167 LTEIMSMG---YERERVVAALRASYNNPHRAVEYLLTGIP----------GSPEPEHGSV 213
Query: 236 PAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQA 295
++QPA A AG L+FLR+ QFQ +R ++Q
Sbjct: 214 QESQVSEQPATEA-----------------------AGENPLEFLRDQPQFQNMRQVIQQ 250
Query: 296 NPQILQPMLQELGKQNPHLMRL 317
NP +L +LQ+LG++NP L++L
Sbjct: 251 NPALLPALLQQLGQENPQLLQL 272
>gi|402904433|ref|XP_003915050.1| PREDICTED: UV excision repair protein RAD23 homolog A isoform 2
[Papio anubis]
Length = 308
Score = 137 bits (346), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 105/315 (33%), Positives = 162/315 (51%), Gaps = 47/315 (14%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
++ E +FVVVM+TK+K ++ A+P ++++S PP PT+ P P
Sbjct: 65 RIDEKNFVVVMVTKTKAGQGTSAPPEASPTAAPESSTSFPPA---PTSGMSHPQPAARED 121
Query: 123 QSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILDM 182
+S E + AP +P P S S AAS LV GS E + +I+ M
Sbjct: 122 KSPSEES--------APTTSPESVSGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSM 173
Query: 183 GGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQ 242
G ++RE V+ ALRA+YNNP RAVEYL +GIP S + G+ ++
Sbjct: 174 G---YERERVVAALRASYNNPHRAVEYLLTGIP----------GSPEPEHGSVQESQVSE 220
Query: 243 QPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQP 302
QPA A AG L+FLR+ QFQ +R ++Q NP +L
Sbjct: 221 QPATEA-----------------------AGENPLEFLRDQPQFQNMRQVIQQNPALLPA 257
Query: 303 MLQELGKQNPHLMRL 317
+LQ+LG++NP L++L
Sbjct: 258 LLQQLGQENPQLLQL 272
>gi|322794461|gb|EFZ17533.1| hypothetical protein SINV_80108 [Solenopsis invicta]
Length = 376
Score = 137 bits (345), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 104/336 (30%), Positives = 156/336 (46%), Gaps = 67/336 (19%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ V+ G F IE+ V D+K+ IE +G +PA Q LI+ GK+L D L E
Sbjct: 18 LIVEDYAGQTFTIEIDSSQTVKDLKEKIEMQKG---FPAEHQKLIYAGKILADEQPLTEY 74
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
+ E F+VVM+TK K +GA+ P T+ + A
Sbjct: 75 NIDEKKFIVVMVTKPK---AGAT----------------------PKTSEEQRAEGDKKE 109
Query: 123 QSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILDM 182
+S + P++ A + ++ + GQA S L+ G + V I+DM
Sbjct: 110 ESTSSATTQPSSNLNIQDTTRAASNVQEQPAAAAPAAGQAESALLMGEDYNTMVNNIMDM 169
Query: 183 GGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQ 242
G ++RE V++ALRA++NNP+RAVEYL +GIP Q P +PP +
Sbjct: 170 G---YEREQVVQALRASFNNPDRAVEYLLTGIPAQLFEDP---------PEDPPEAQEQL 217
Query: 243 QPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQP 302
Q + P L FLR QFQ +R ++Q NPQ+L
Sbjct: 218 QDQSQDP---------------------------LAFLRLQPQFQQMRQVIQQNPQLLNN 250
Query: 303 MLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEG 338
+LQ++G NP L++LI ++Q F+R++NEPVE G
Sbjct: 251 LLQQIGSTNPALLQLISQNQEAFVRMLNEPVEPAAG 286
>gi|187117168|ref|NP_001119685.1| rad23 protein [Acyrthosiphon pisum]
gi|89473754|gb|ABD72689.1| putative RAD23-like B [Acyrthosiphon pisum]
gi|239788640|dbj|BAH70991.1| ACYPI000077 [Acyrthosiphon pisum]
Length = 347
Score = 137 bits (344), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 108/342 (31%), Positives = 167/342 (48%), Gaps = 68/342 (19%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + K L+ F++E+ + V +K+ ++ +GS+ Y A Q LI+ GK+L D T +
Sbjct: 1 MLITFKNLQQHTFKLEIDSDQTVRQLKEKLQAEKGSE-YLAENQKLIYAGKILSDDTKIS 59
Query: 61 ENKVAENSFVVVMLTKS---KVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAP 117
+ + FVVVM++K+ ++S +T SAA A T S P ST P
Sbjct: 60 DCNIDSKKFVVVMVSKATGAVTATSATNTASAASATSVSDTKSTPSVST----------P 109
Query: 118 TV-APPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATV 176
+ A S+P + P P+P A P ++ASN E T+
Sbjct: 110 MIPADNSSIPIAQPRVVEQLPSPVETRASEP-------------ESASN----DETERTI 152
Query: 177 QQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVA---RASAGGQAG 233
Q I+DMG ++R V ALRA++NNP+RAVEYL +GIP++ P R+ +G
Sbjct: 153 QNIMDMG---YERPQVEEALRASFNNPDRAVEYLLTGIPQELLTDPTISPNRSVLSEDSG 209
Query: 234 NPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMV 293
+ +Q P + P L FLRN FQ +RT+V
Sbjct: 210 DLSGSSQV-------PATDP-----------------------LAFLRNQPTFQQMRTVV 239
Query: 294 QANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEG 335
Q NP++L +LQ++G+ NP L+++I +Q F+R++NEP EG
Sbjct: 240 QQNPELLNSVLQQIGQTNPALLQMISNNQEAFVRMLNEPNEG 281
>gi|410950562|ref|XP_003981973.1| PREDICTED: UV excision repair protein RAD23 homolog A isoform 2
[Felis catus]
Length = 308
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 105/315 (33%), Positives = 162/315 (51%), Gaps = 47/315 (14%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
++ E +FVVVM+TK+K S + A+P ++++S PP P + P+PT
Sbjct: 65 RIDEKNFVVVMVTKAKTSPGTSVPPEASPTAAPESSTSFPPA---PASGMSQPSPTARED 121
Query: 123 QSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILDM 182
+S E + P +P P S S AAS LV GS E + +I+ M
Sbjct: 122 KSPSEES--------VPTTSPESVSGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSM 173
Query: 183 GGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQ 242
G ++RE V+ ALRA+YNNP RAVEYL +GIP S + G+ ++
Sbjct: 174 G---YERERVVAALRASYNNPHRAVEYLLTGIP----------GSPEPEHGSVQESQVSE 220
Query: 243 QPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQP 302
QPA A AG L+FLR+ QFQ +R ++Q NP +L
Sbjct: 221 QPATEA-----------------------AGENPLEFLRDQPQFQNMRQVIQQNPALLPA 257
Query: 303 MLQELGKQNPHLMRL 317
+LQ+LG++NP L++L
Sbjct: 258 LLQQLGQENPQLLQL 272
>gi|403302246|ref|XP_003941773.1| PREDICTED: UV excision repair protein RAD23 homolog A isoform 2
[Saimiri boliviensis boliviensis]
Length = 308
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 105/315 (33%), Positives = 162/315 (51%), Gaps = 47/315 (14%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
++ E +FVVVM+TK+K ++ A+P ++++S PP PT+ P P
Sbjct: 65 RIDEKNFVVVMVTKTKAVQGTSAPPEASPTAAPESSTSFPPA---PTSGMSHPPPAAGED 121
Query: 123 QSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILDM 182
+S E + AP +P P S S AAS LV GS E + +I+ M
Sbjct: 122 KSPSEES--------APTTSPESVSGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSM 173
Query: 183 GGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQ 242
G ++RE V+ ALRA+YNNP RAVEYL +GIP S + G+ ++
Sbjct: 174 G---YEREQVVAALRASYNNPHRAVEYLLTGIP----------GSPEPEHGSVQESQVSE 220
Query: 243 QPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQP 302
QPA A AG L+FLR+ QFQ +R ++Q NP +L
Sbjct: 221 QPATEA-----------------------AGENPLEFLRDQPQFQNMRQVIQQNPALLPA 257
Query: 303 MLQELGKQNPHLMRL 317
+LQ+LG++NP L++L
Sbjct: 258 LLQQLGQENPQLLQL 272
>gi|391330987|ref|XP_003739932.1| PREDICTED: UV excision repair protein RAD23 homolog B-like
[Metaseiulus occidentalis]
Length = 336
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 116/368 (31%), Positives = 167/368 (45%), Gaps = 73/368 (19%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+ V VK L F IE+ + V D+K+ I ++G+ +PA Q LI QG+++ D ++
Sbjct: 3 LTVNVKCLTNELFTIEIDDDCTVKDMKEKISEIKGA-AFPAVHQKLIAQGRIMADQDKVK 61
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ FVV+M++K PA AQ A T + A V
Sbjct: 62 TYDLKSVKFVVIMVSK--------------PATGAQ--PGAASTEQPAAPAAAAEAKPVE 105
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P+ P+ A P A P+ + A S LV G + V+ I
Sbjct: 106 SPEEKPKEAGTPTATRPSTTTPSTDSSAGN------------ESTLVVGEQYKQMVESIT 153
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
+MG + ++ V RALRA+YNNP+RAVEYL +G P A NP A Q
Sbjct: 154 EMG---YPQDQVERALRASYNNPDRAVEYLVTGFP--------PEEEEARAAENPRAPRQ 202
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQIL 300
P G+ G L FLRN QFQ +R ++ NP +L
Sbjct: 203 -------------------------PGAGTQ---GDLSFLRNQPQFQQMRNAIRDNPALL 234
Query: 301 QPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNV--LGQLASA---MPQAVTVT 355
++Q+LG NP L+RLI ++Q DF+RL+NE + EG + LG+ A A + VT
Sbjct: 235 DTIIQQLGSNNPDLLRLITQNQDDFMRLLNEEDDAAEGALPELGEGAPAGGPLVIEAHVT 294
Query: 356 PEEREAIE 363
P++REAIE
Sbjct: 295 PQDREAIE 302
>gi|297276258|ref|XP_001110103.2| PREDICTED: UV excision repair protein RAD23 homolog A [Macaca
mulatta]
Length = 276
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 103/315 (32%), Positives = 162/315 (51%), Gaps = 48/315 (15%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
++ E +FVVVM+TK+K ++ A+P ++++S PP PT+ P P
Sbjct: 65 RIDEKNFVVVMVTKTKAGQGTSAPPEASPTAAPESSTSFPPA---PTSGMSHPQPAARED 121
Query: 123 QSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILDM 182
+S E + AP +P P S S AAS LV GS E + +I+ M
Sbjct: 122 KSPSEES--------APTTSPESVSGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSM 173
Query: 183 GGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQ 242
G ++RE V+ ALRA+YNNP RAVEYL +GIP S + G+ ++
Sbjct: 174 G---YERERVVAALRASYNNPHRAVEYLLTGIP----------GSPEPEHGSVQESQVSE 220
Query: 243 QPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQP 302
QPA + AG L+FLR+ QFQ +R ++Q NP +L
Sbjct: 221 QPA------------------------TEAGENPLEFLRDQPQFQNMRQVIQQNPALLPA 256
Query: 303 MLQELGKQNPHLMRL 317
+LQ+LG++NP L+++
Sbjct: 257 LLQQLGQENPQLLQV 271
>gi|397487606|ref|XP_003814883.1| PREDICTED: UV excision repair protein RAD23 homolog A isoform 2
[Pan paniscus]
Length = 308
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 105/315 (33%), Positives = 161/315 (51%), Gaps = 47/315 (14%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
++ E +FVVVM+TK+K + A+P ++++S PP PT+ P P
Sbjct: 65 RIDEKNFVVVMVTKTKAGQGTPAPPEASPTAAPESSTSFPPA---PTSGMSHPPPAARED 121
Query: 123 QSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILDM 182
+S E + AP +P P S S AAS LV GS E + +I+ M
Sbjct: 122 KSPSEES--------APTTSPESVSGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSM 173
Query: 183 GGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQ 242
G ++RE V+ ALRA+YNNP RAVEYL +GIP S + G+ ++
Sbjct: 174 G---YERERVVAALRASYNNPHRAVEYLLTGIP----------GSPEPEHGSVQESQVSE 220
Query: 243 QPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQP 302
QPA A AG L+FLR+ QFQ +R ++Q NP +L
Sbjct: 221 QPATEA-----------------------AGENPLEFLRDQPQFQNMRQVIQQNPALLPA 257
Query: 303 MLQELGKQNPHLMRL 317
+LQ+LG++NP L++L
Sbjct: 258 LLQQLGQENPQLLQL 272
>gi|217070100|gb|ACJ83410.1| unknown [Medicago truncatula]
gi|388522857|gb|AFK49490.1| unknown [Medicago truncatula]
Length = 142
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 68/103 (66%), Positives = 83/103 (80%), Gaps = 1/103 (0%)
Query: 260 LFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQ 319
+FPQ + G+ AGAG+LDFLRN+ QFQALRTMVQ+NPQILQP+LQELGKQNP L+RLI
Sbjct: 1 MFPQETIS-GAGAGAGSLDFLRNNPQFQALRTMVQSNPQILQPVLQELGKQNPGLLRLID 59
Query: 320 EHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEEREAI 362
EH ++FL+LINEP++G EG+ Q MP AV VTP E+EAI
Sbjct: 60 EHHSEFLQLINEPMDGTEGDNFDQAEQDMPHAVNVTPAEQEAI 102
>gi|154292520|ref|XP_001546834.1| nucleotide excision repair protein RAD23 [Botryotinia fuckeliana
B05.10]
gi|347836511|emb|CCD51083.1| similar to UV excision repair protein (RadW) [Botryotinia
fuckeliana]
Length = 376
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 132/392 (33%), Positives = 189/392 (48%), Gaps = 83/392 (21%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ K LK F +E +P + VSDVK+ I +G + ASQQ LI+ GK+L+D TLE
Sbjct: 1 MKLTFKDLKQQKFVLEAEPTELVSDVKEKIFKEKG---WEASQQKLIYSGKILQDANTLE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTT--TSQTPAPT 118
+ E F+V M+TK K + + +S A + ++ P + + TS T P
Sbjct: 58 SYHIEEKGFIVCMITKPKAAPAASSAPKAPSTPAPASAATPAPPAAPAHSSSTSNTAVP- 116
Query: 119 VAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQ 178
A P+PA A PAP P+ + L G+ A + +
Sbjct: 117 --------------ATPSPAGASIPAPQATPS----------NETTGLAMGAERSAQIAE 152
Query: 179 ILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP--PVARASAGGQAGNPP 236
+ MG ++R + A+RAA+ N ERA+EYL +GIPE+ P A A QA +PP
Sbjct: 153 MESMG---FERSQIEAAMRAAFYNSERAIEYLLNGIPERLLQEQQPTPAAPAAVQASSPP 209
Query: 237 AQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAG--------------------- 275
A +G +P+DLF Q N G+ GA
Sbjct: 210 A-------------AGGEDDPVDLF-QAAANAGNRGGAARGRPGVDPLGGAGAGAAAGGL 255
Query: 276 -TLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVE 334
LDFLRN+ QFQ LR +VQ PQ+L+P+LQ++G NP L LI +H FL+L++E +
Sbjct: 256 GNLDFLRNNPQFQQLRQVVQQQPQMLEPILQQVGAGNPQLATLISQHPEQFLQLLSENAD 315
Query: 335 GGEGNVLGQLASAMP---QAVTVTPEEREAIE 363
+ +P QA+ VTPEER+AIE
Sbjct: 316 DD---------APLPPGAQAIEVTPEERDAIE 338
>gi|242079575|ref|XP_002444556.1| hypothetical protein SORBIDRAFT_07g023746 [Sorghum bicolor]
gi|241940906|gb|EES14051.1| hypothetical protein SORBIDRAFT_07g023746 [Sorghum bicolor]
Length = 184
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 99/198 (50%), Positives = 117/198 (59%), Gaps = 25/198 (12%)
Query: 77 SKVSSSGASTVSAA--PANQAQTTS--SAP--PTSTQPTTTSQTPAPTVAPPQSVPESAP 130
+K SSSGAST +AA PA Q +AP P ++ T +Q P T
Sbjct: 1 AKASSSGASTATAAKVPATPGQVCGHPAAPVVPATSVARTPTQAPVAT------------ 48
Query: 131 PPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRE 190
A AP A A A S +DVY QAASNLV+G+NLE +QQILDMGGG+W+R+
Sbjct: 49 --AETAPPSAQPQAAPAATLAASGDADVYSQAASNLVSGNNLEQIIQQILDMGGGTWERD 106
Query: 191 TVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGN----PPAQTQAQQPAA 246
TV+RALRAAYNNPERA++YLYSGIP PPVA A AGGQ N PAQ P
Sbjct: 107 TVVRALRAAYNNPERAIDYLYSGIPVNVETPPVAGAPAGGQQTNQQAPSPAQPAVASPVQ 166
Query: 247 PAPTSG-PNANPLDLFPQ 263
P+ S P+ANPL LFPQ
Sbjct: 167 PSAASARPDANPLILFPQ 184
>gi|441628881|ref|XP_003275714.2| PREDICTED: UV excision repair protein RAD23 homolog A [Nomascus
leucogenys]
Length = 397
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 120/387 (31%), Positives = 183/387 (47%), Gaps = 58/387 (14%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
++ E +FVVVM+TK+K ++ A+P ++++S PP PT+ P P
Sbjct: 65 RIDEKNFVVVMVTKTKAGQGTSAPPEASPTAAPESSTSFPPA---PTSGMSHPPPAARED 121
Query: 123 QSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILDM 182
+S E + AP +P P S S AAS LV GS E + +I+ M
Sbjct: 122 KSPSEES--------APTTSPESVSGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSM 173
Query: 183 GGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQ 242
G ++RE V+ ALRA+YNNP RAVEYL +GIP AS + G+ ++
Sbjct: 174 G---YERERVVAALRASYNNPHRAVEYLLTGIP----------ASPEPEHGSVQESQVSE 220
Query: 243 QPAAPAPTSGPNANPLDLF---------------PQGLPNMGSNAGAGTL-DFLRNSQQF 286
QPA A A L + P P + ++ A FL QF
Sbjct: 221 QPATEAGGCARAACALQMHSPCAFAFAVCFTWRKPSASPILQASPPALVCSSFLARHSQF 280
Query: 287 QALRTMVQANPQILQ-PMLQELGKQNPH-LMRLIQEHQTDFLRLINEP------VEGGEG 338
+ + + Q + P L PH L + I HQ F++++NEP + EG
Sbjct: 281 KGCDDLGRGGDQGCELPCL-------PHPLPQQISRHQEQFIQMLNEPPGELADISDVEG 333
Query: 339 NVLGQLASAMPQA--VTVTPEEREAIE 363
V G + PQ + VTP+E+EAIE
Sbjct: 334 EV-GAIGEEAPQMNYIQVTPQEKEAIE 359
>gi|328861399|gb|EGG10502.1| hypothetical protein MELLADRAFT_93497 [Melampsora larici-populina
98AG31]
Length = 416
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 124/396 (31%), Positives = 184/396 (46%), Gaps = 58/396 (14%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ KTL+ F ++V+P ++++K I+ QG + Q +I GK+L D +
Sbjct: 1 MKLTFKTLQKQQFVLDVEPSITIANLKLQIKESQG---FEPELQKIIFSGKILSDEKLIS 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPA--PT 118
+ +V E F V+ML K K A TV A T+++A P+ST + TPA P
Sbjct: 58 DIEVKEKDFFVIMLMKPKT----APTVPAP-----STSAAAVPSSTSAPVQTSTPAAPPA 108
Query: 119 VAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQ 178
+ P + PES P A + PA AP G + GS L+ T+ +
Sbjct: 109 TSTPSANPESTPATTTEPQAAVDSSTPAVAP----------GTQDPGFLTGSGLQTTIDE 158
Query: 179 ILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE-QTAVPPVARASAGGQAGNPPA 237
I++ G + RE V++A+RAA+NNP+RAVEYL +GIP A+PP A AG
Sbjct: 159 IVN--GMGFPREEVVKAMRAAFNNPDRAVEYLMTGIPAGLDALPPSAAPRAGAPTPATAT 216
Query: 238 QTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAG---------------------AGT 276
A PAP + P +LF ++ +
Sbjct: 217 APTPGANAVPAPVA-PTTASRNLFEAAAQHVAQQRQPAAAATPAAAPAGAAGATANTSRV 275
Query: 277 LDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVE-- 334
L+ LRN+ Q LR +VQ NPQ+LQP +Q+LG+ NP L+ + + + ++E +
Sbjct: 276 LESLRNNPQMVQLRQLVQTNPQLLQPFMQQLGQSNPALLAQLSANPELLMGFLSEGADQA 335
Query: 335 GGEG-------NVLGQLASAMPQAVTVTPEEREAIE 363
G G LG Q V VTPEE+EAI+
Sbjct: 336 GDFGMDEGGFPPGLGGGDGTGAQYVQVTPEEQEAID 371
>gi|126723729|ref|NP_001075850.1| protein RAD23 repair 23 (2L942) [Oryctolagus cuniculus]
gi|1857435|gb|AAB48442.1| oncogene [Oryctolagus cuniculus]
Length = 748
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 102/311 (32%), Positives = 152/311 (48%), Gaps = 60/311 (19%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++PE+ V +K+ IE +G D +P + Q LI+ GK+L D + +
Sbjct: 5 ITLKTLQQQTFKIRMEPEETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
++ E +FVVVM+TK+K A SSAPP ++ PT ++ A + A P
Sbjct: 65 RIDEKNFVVVMVTKAK----------------AGQGSSAPPEAS-PTAAPESSATSPAAP 107
Query: 123 QSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYG------QAASNLVAGSNLEATV 176
S PP +P+ AP +P VS G AAS LV GS E +
Sbjct: 108 ASGMSHPPPATREDKSPSEESAPTTSPESVSGSVPSSGSSGREEDAASTLVTGSEYETML 167
Query: 177 QQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPP 236
+I+ MG ++RE V+ ALRA+YNNP RAVEYL +GIP S + G+
Sbjct: 168 TEIMSMG---YERERVVAALRASYNNPHRAVEYLLTGIP----------GSPEPEHGSVQ 214
Query: 237 AQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQAN 296
++QPA + AG L+FLR+ QFQ +R ++Q N
Sbjct: 215 ESQVSEQPA------------------------TEAGENPLEFLRDQPQFQNMRQVIQQN 250
Query: 297 PQILQPMLQEL 307
P +L +L+
Sbjct: 251 PALLPALLRHC 261
>gi|19113023|ref|NP_596231.1| UV excision repair protein rhp23 [Schizosaccharomyces pombe 972h-]
gi|21542214|sp|O74803.1|RHP23_SCHPO RecName: Full=UV excision repair protein rhp23; AltName: Full=RAD23
homolog
gi|5805388|gb|AAD51975.1|AF174293_1 Rhp23 [Schizosaccharomyces pombe]
gi|3687502|emb|CAA21170.1| Rad23 homolog Rhp23 [Schizosaccharomyces pombe]
Length = 368
Score = 132 bits (331), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 117/374 (31%), Positives = 183/374 (48%), Gaps = 58/374 (15%)
Query: 1 MKVFVKTLKGTHFEI-EVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTL 59
M + K L+ F I +V + K+S++K+ I+T Q Y +Q LI+ G++L D T+
Sbjct: 1 MNLTFKNLQQQKFVISDVSADTKISELKEKIQTQQN---YEVERQKLIYSGRILADDKTV 57
Query: 60 EENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTV 119
E + E F+V M+++ K S+S + ++ N + P + P+ TV
Sbjct: 58 GEYNIKEQDFIVCMVSRPKTSTSTPKSAASPAPNPPASV---------PEKKVEAPSSTV 108
Query: 120 APPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQI 179
A S ++ A AP+ A + AP+ A+ L G+ V+ +
Sbjct: 109 AESTSTTQTVA-----AAAPSNPDTTATSEAPID---------ANTLAVGAQRNVAVENM 154
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 239
++MG ++R V RA+RAA+NNP+RAVEYL +GIPE + +
Sbjct: 155 VEMG---YERSEVERAMRAAFNNPDRAVEYLLTGIPEDIL-------NRQREESAAALAA 204
Query: 240 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSN-------AGAGTLDFLRNSQQFQALRTM 292
Q QQ A APTS P +LF Q + N G L FLR+ QFQ LR +
Sbjct: 205 QQQQSEALAPTS--TGQPANLFEQAALSENENQEQPSNTVGDDPLGFLRSIPQFQQLRQI 262
Query: 293 VQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQA- 351
VQ NPQ+L+ +LQ++G+ +P L + I ++ FL+L+ EG EG SA+P
Sbjct: 263 VQQNPQMLETILQQIGQGDPALAQAITQNPEAFLQLL---AEGAEGE------SALPSGG 313
Query: 352 --VTVTPEEREAIE 363
+ +T EE E+I+
Sbjct: 314 IQIQITQEESESID 327
>gi|195469335|ref|XP_002099593.1| GE14546 [Drosophila yakuba]
gi|194185694|gb|EDW99305.1| GE14546 [Drosophila yakuba]
Length = 411
Score = 131 bits (329), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 102/335 (30%), Positives = 164/335 (48%), Gaps = 41/335 (12%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + +K L+ F IE PE V ++KK I +G + Y A +Q LI+ G +L D T+
Sbjct: 1 MIITIKNLQQQTFTIEFAPEKTVLELKKKIFDERGPE-YVAEKQKLIYAGVILTDDRTVG 59
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTS-TQPTTTSQTPAPTV 119
V E F+VVMLT+ SSS + + +++ +T + + + + S +P T
Sbjct: 60 SYNVDEKKFIVVMLTRDS-SSSNPNQLGVKESDKLTSTDNLKDSMPREESNHSNSPPVTR 118
Query: 120 APPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQI 179
+S+ S P + A A + S +A SNL+ G TV +
Sbjct: 119 NSEESILLSETTPISTDNLIGEL-----AQASLQS------RAESNLLMGDEYNQTVLSM 167
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 239
++MG + RE V RA+ A+YNNPERAVEYL +GIP + + ++ NP
Sbjct: 168 VEMG---YPREQVERAMAASYNNPERAVEYLINGIPAEEGTID----NDVNESTNPNGPQ 220
Query: 240 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQI 299
+ P S N++P + FLR+ QF +R+++ NP +
Sbjct: 221 TGSASSVERP-SESNSDPFE-------------------FLRSQPQFLQMRSLIYQNPHL 260
Query: 300 LQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVE 334
L +LQ++G+ NP L++LI E+Q FL ++N+P+E
Sbjct: 261 LHAVLQQIGQTNPALLQLISENQDAFLNMLNQPIE 295
>gi|426228904|ref|XP_004008535.1| PREDICTED: UV excision repair protein RAD23 homolog A isoform 2
[Ovis aries]
Length = 311
Score = 130 bits (328), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 102/315 (32%), Positives = 162/315 (51%), Gaps = 44/315 (13%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
++ E +FVVVM+TK+K S + A+P ++++S P + P + P PT
Sbjct: 65 RIDEKNFVVVMVTKAKTSPGTSVPSEASPTATPESSTSFP---SAPASGMSHPPPTARED 121
Query: 123 QSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILDM 182
+S E +AP +P P+ DV AA + V GS E + +I+ M
Sbjct: 122 KSPSEE----SAPTTSPESVSGSVPSSGSSGREEDV-AFAAPSTVTGSEYETMLTEIMSM 176
Query: 183 GGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQ 242
G ++RE V+ ALRA+YNNP RAVEYL +GIP S + G+ ++
Sbjct: 177 G---YERERVVAALRASYNNPHRAVEYLLTGIP----------GSPEPEHGSVQESQVSE 223
Query: 243 QPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQP 302
QP+ A AG L+FLR+ QFQ +R ++Q NP +L
Sbjct: 224 QPSTEA-----------------------AGENPLEFLRDQPQFQNMRQVIQQNPALLPA 260
Query: 303 MLQELGKQNPHLMRL 317
+LQ+LG++NP L++L
Sbjct: 261 LLQQLGQENPQLLQL 275
>gi|328771201|gb|EGF81241.1| hypothetical protein BATDEDRAFT_16317 [Batrachochytrium
dendrobatidis JAM81]
Length = 377
Score = 130 bits (328), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 132/379 (34%), Positives = 187/379 (49%), Gaps = 60/379 (15%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ KTL+ +F++EV+ KV +VK+ I +G Y + Q LIH GK+L D +T+E
Sbjct: 1 MKLTFKTLQQDNFQVEVEQTAKVIEVKEAILAAKG---YTVASQKLIHSGKILNDASTIE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E K++E F+VVM++K K ++ A V+ AP A + P + T S P
Sbjct: 58 ELKISEKDFIVVMVSKPKPVAAPAPVVAPAPVTPAVPVTPTVPVAPTATPASAVP----- 112
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P SV P A VY A SNL +
Sbjct: 113 PADSVDTPVNPETLTTTTALATGA-------------VYENAVSNL-------------M 146
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQ-AGNPPAQT 239
+MG + R+ V A+R A+NNP+RA EYL +GIP+ VAR A + T
Sbjct: 147 EMG---FPRDQVTHAMRTAFNNPDRAAEYLMTGIPD-----SVAREFASTAPVLSDTTTT 198
Query: 240 QAQQPAAPAPTSGPNANPLDLFPQGLPNM--------GSNA-GAG---TLDFLRNSQQFQ 287
+ A P + ++LF S+A GAG TL FLRNS QFQ
Sbjct: 199 PSSTAAPATPAAPAATQHINLFEAAAAQAAQSRSGAAASHAPGAGDASTLSFLRNSPQFQ 258
Query: 288 ALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVL----GQ 343
LR +V + PQ+LQP+LQ++G+ NP L++LI ++Q FL+++NE E G GN+
Sbjct: 259 QLRQLVHSQPQLLQPLLQQIGQTNPELLQLISQNQGQFLQMLNEGSEEG-GNIASAEGAD 317
Query: 344 LASAMPQAVTVTPEEREAI 362
+AM Q +TVT EE EAI
Sbjct: 318 DTAAMGQQITVTTEENEAI 336
>gi|149037168|gb|EDL91699.1| RAD23b homolog (S. cerevisiae), isoform CRA_a [Rattus norvegicus]
gi|149037169|gb|EDL91700.1| RAD23b homolog (S. cerevisiae), isoform CRA_a [Rattus norvegicus]
Length = 343
Score = 130 bits (327), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 97/279 (34%), Positives = 138/279 (49%), Gaps = 47/279 (16%)
Query: 109 TTTSQTPAPTVAPPQSVPESAPPPAAPAPAPA-----PAPAPAPAPAPVSSVSDVYGQAA 163
T S TPA T A + P A P PA PA +PAPA + SS S+++ A
Sbjct: 50 TPASTTPASTTASSEPAPTGATQPEKPAEKPAQTPVLTSPAPADSTPGDSSRSNLFEDAT 109
Query: 164 SNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP----EQTA 219
S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP Q
Sbjct: 110 SALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAV 166
Query: 220 VPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDF 279
V P PP P +PA + + +G L+F
Sbjct: 167 VDP------------PPQAVSTGTPQSPAVAAAAATTTA--------TTTTTSGGHPLEF 206
Query: 280 LRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG--- 336
LRN QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F++++NEPV+
Sbjct: 207 LRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQ 266
Query: 337 ------------EGNVLGQLASAMPQAVTVTPEEREAIE 363
G + + S + VTP+E+EAIE
Sbjct: 267 GGGGGGGGGGGGGGGGIAEAGSGHMNYIQVTPQEKEAIE 305
>gi|60422770|gb|AAH90351.1| Rad23b protein [Rattus norvegicus]
Length = 333
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 97/279 (34%), Positives = 138/279 (49%), Gaps = 47/279 (16%)
Query: 109 TTTSQTPAPTVAPPQSVPESAPPPAAPAPAPA-----PAPAPAPAPAPVSSVSDVYGQAA 163
T S TPA T A + P A P PA PA +PAPA + SS S+++ A
Sbjct: 40 TPASTTPASTTASSEPAPTGATQPEKPAEKPAQTPVLTSPAPADSTPGDSSRSNLFEDAT 99
Query: 164 SNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP----EQTA 219
S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP Q
Sbjct: 100 SALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAV 156
Query: 220 VPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDF 279
V P PP P +PA + + +G L+F
Sbjct: 157 VDP------------PPQAVSTGTPQSPAVAAAAATTTAT--------TTTTSGGHPLEF 196
Query: 280 LRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG--- 336
LRN QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F++++NEPV+
Sbjct: 197 LRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQ 256
Query: 337 ------------EGNVLGQLASAMPQAVTVTPEEREAIE 363
G + + S + VTP+E+EAIE
Sbjct: 257 GGGGGGGGGGGGGGGGIAEAGSGHMNYIQVTPQEKEAIE 295
>gi|148670317|gb|EDL02264.1| RAD23b homolog (S. cerevisiae), isoform CRA_b [Mus musculus]
gi|148670318|gb|EDL02265.1| RAD23b homolog (S. cerevisiae), isoform CRA_b [Mus musculus]
Length = 344
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 97/280 (34%), Positives = 138/280 (49%), Gaps = 48/280 (17%)
Query: 109 TTTSQTPAPTVAPPQSVPESAPPPAAPAPAPA-----PAPAPAPAPAPVSSVSDVYGQAA 163
T S TPA T A + P A P PA PA +PAPA + SS S+++ A
Sbjct: 50 TPASTTPASTTASSEPAPAGATQPEKPAEKPAQTPVLTSPAPADSTPGDSSRSNLFEDAT 109
Query: 164 SNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP----EQTA 219
S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP Q
Sbjct: 110 SALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAV 166
Query: 220 VPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDF 279
V P PP P +PA + + +G L+F
Sbjct: 167 VDP------------PPQAVSTGTPQSPAVAAAAATTTAT--------TTTTSGGHPLEF 206
Query: 280 LRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG--- 336
LRN QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F++++NEPV+
Sbjct: 207 LRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQ 266
Query: 337 -------------EGNVLGQLASAMPQAVTVTPEEREAIE 363
G + + S + VTP+E+EAIE
Sbjct: 267 GGGGGGGGGGGGGGGGGIAEAGSGHMNYIQVTPQEKEAIE 306
>gi|209879445|ref|XP_002141163.1| UV excision repair protein Rad23 [Cryptosporidium muris RN66]
gi|209556769|gb|EEA06814.1| UV excision repair protein Rad23, putative [Cryptosporidium muris
RN66]
Length = 347
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 106/363 (29%), Positives = 172/363 (47%), Gaps = 62/363 (17%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ V+T++ T EIEV+ V +K+ IE AS+Q LI G++L D T++
Sbjct: 1 MKIKVRTVQNTEHEIEVEDNFTVLQIKQLIEAKNSQ--MTASRQKLIFAGRILGDSQTVQ 58
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ + E +VV+++K GA ++ +Q + ++ T P TT+
Sbjct: 59 DIGIKEGERLVVLVSK------GAIQQKSSEISQTKNIGNSTSAQTTPVTTN-------- 104
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P + + Y +AS L+ G+ LE T+ I+
Sbjct: 105 --------------------------TGVIPNNCDQNTYESSASALITGTELETTINNIV 138
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
+MG ++R VI A+RAA+NNP+RAVEYL SGIP P GQ +
Sbjct: 139 NMG---FERNQVIAAMRAAFNNPDRAVEYLTSGIP-----LPGIIIQGQGQGQGQSEVSL 190
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQIL 300
+Q P + N + N + G LD LR + FQ LR +VQ +P+IL
Sbjct: 191 SQAATTPINPEMSDINQIS------TNASGDTVTGALDSLRTNPIFQQLRMVVQQDPRIL 244
Query: 301 QPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEERE 360
+L +G+ NP +++LI E+Q +F+RL+ E + + +G++ A +V +T +E E
Sbjct: 245 PELLARVGQTNPEILQLITENQEEFIRLM----ERTDSDDIGEINGAT--SVYLTQQEAE 298
Query: 361 AIE 363
A+E
Sbjct: 299 AVE 301
>gi|219112521|ref|XP_002178012.1| RAD23 [Phaeodactylum tricornutum CCAP 1055/1]
gi|217410897|gb|EEC50826.1| RAD23 [Phaeodactylum tricornutum CCAP 1055/1]
Length = 434
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 116/334 (34%), Positives = 153/334 (45%), Gaps = 79/334 (23%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG FEI + V+DVK IE + A LIH GKVLKD ++
Sbjct: 1 MKLLVKTLKGEKFEIHAEESQTVADVKGIIEATKSE--LSAGTLKLIHSGKVLKDEDSIA 58
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ EN F+VVM+TK+K P + +P T TP P
Sbjct: 59 SAGIKENDFLVVMVTKAK-----------------------KPVAAKPAATP-TPVPAAT 94
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P PP AA A PAP A PA + DV +A +NL + EA V+
Sbjct: 95 P-------GPPVAAAASIETPAPTAAATPAAPTRADDVSAEAVANLTSMGFPEAEVK--- 144
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
LRAA+ NP+ AVE+L +GIPE VA A+A A N A T
Sbjct: 145 -------------HCLRAAHGNPDIAVEFLTNGIPE-----GVAEAAA---AMNTSAVTS 183
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQIL 300
+ + SG PL LRN QF LR +VQ+NPQ+L
Sbjct: 184 PSASSESSSGSG---QPLQA-------------------LRNHPQFNDLRRLVQSNPQML 221
Query: 301 QPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVE 334
Q +L ++G+Q P L++ I +Q FL+++NEPVE
Sbjct: 222 QQVLTQIGQQQPQLLQEINANQALFLQIMNEPVE 255
>gi|347800665|ref|NP_001231653.1| UV excision repair protein RAD23 homolog B isoform 3 [Homo sapiens]
gi|119579420|gb|EAW59016.1| RAD23 homolog B (S. cerevisiae), isoform CRA_a [Homo sapiens]
Length = 337
Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 103/285 (36%), Positives = 143/285 (50%), Gaps = 60/285 (21%)
Query: 114 TPAPTVAPPQSVPESAPPPAAPA---PAPAPA-----PAPAPAPAPV------------- 152
TP P +AP S P S P +A A PAPA A PA PA PV
Sbjct: 40 TPVPALAP-TSTPASITPASATASSEPAPASAAKQEKPAEKPAETPVATSPTATDSTSGD 98
Query: 153 SSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYS 212
SS S+++ A S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL
Sbjct: 99 SSRSNLFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLM 155
Query: 213 GIP---EQTAV--PPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPN 267
GIP E AV PP A ++ Q+ A +SG G P
Sbjct: 156 GIPGDRESQAVVDPPQAASTGAPQSSAVAAAAATTTATTTTTSSG-----------GHP- 203
Query: 268 MGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLR 327
L+FLRN QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F++
Sbjct: 204 ---------LEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQ 254
Query: 328 LINEPVEGG---------EGNVLGQLASAMPQAVTVTPEEREAIE 363
++NEPV+ + + S + VTP+E+EAIE
Sbjct: 255 MLNEPVQEAGGQGGGGGGGSGGIAEAGSGHMNYIQVTPQEKEAIE 299
>gi|67621260|ref|XP_667750.1| RAD 23B protein [Cryptosporidium hominis TU502]
gi|54658903|gb|EAL37511.1| RAD 23B protein - channel catfish [Cryptosporidium hominis]
Length = 341
Score = 127 bits (319), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 101/367 (27%), Positives = 176/367 (47%), Gaps = 73/367 (19%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ ++T++ T E+EV+ + + VK+ I+ + + V AS+ LI G++L D T++
Sbjct: 1 MKIKIRTVQNTEMEVEVEADYSIEKVKQAIQEL--NPVMEASRLKLIFAGRILNDSQTVQ 58
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ + E +VV+L+K + S + ++ ++ P ++ T+ QT +
Sbjct: 59 DVGIKEGERLVVLLSKGASQKAAESQQNKQNNTSNESNTNTDPAASATTSNIQTQSGNSD 118
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P AS L+ G+ LE T+ I+
Sbjct: 119 PS------------------------------------IDSRASALLTGTELEETITNIV 142
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
+MG ++RE V RA+RAA+NNP+RAVEYL SG+P +P
Sbjct: 143 NMG---FEREQVTRAMRAAFNNPDRAVEYLTSGLP----IP------------------- 176
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGL---PNMGSNAGAGTLDFLRNSQQFQALRTMVQANP 297
+ P AP PT+ N GL + S G L+ LR + FQ LR++VQ +P
Sbjct: 177 -ENPVAPNPTNITPVNSNASLNAGLTPSEELSSEQLPGNLESLRTNPLFQQLRSVVQQDP 235
Query: 298 QILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASA-MPQAVTVTP 356
+IL +L +G+ NP +++LI E+Q +F+R++ E + + +G+ + M + +TP
Sbjct: 236 RILPELLVRIGQSNPEILQLITENQEEFIRMM----ERTDSDEVGETSQFPMQTTIQLTP 291
Query: 357 EEREAIE 363
+E E++E
Sbjct: 292 QEAESVE 298
>gi|32402044|gb|AAP81008.1| RAD23-like protein B [Homo sapiens]
Length = 337
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 103/285 (36%), Positives = 143/285 (50%), Gaps = 60/285 (21%)
Query: 114 TPAPTVAPPQSVPESAPPPAAPA---PAPAPA-----PAPAPAPAPV------------- 152
TP P +AP S P S P +A A PAPA A PA PA PV
Sbjct: 40 TPVPALAP-TSTPASITPASATASSEPAPASAAKQEKPAEKPAETPVATSPTATDSTSGD 98
Query: 153 SSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYS 212
SS S+++ A S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL
Sbjct: 99 SSRSNLFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLM 155
Query: 213 GIP---EQTAV--PPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPN 267
GIP E AV PP A ++ Q+ A +SG G P
Sbjct: 156 GIPGDRESQAVVDPPQAASTGVPQSSAVAAAAATTTATTTTTSSG-----------GHP- 203
Query: 268 MGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLR 327
L+FLRN QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F++
Sbjct: 204 ---------LEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQ 254
Query: 328 LINEPVEGG---------EGNVLGQLASAMPQAVTVTPEEREAIE 363
++NEPV+ + + S + VTP+E+EAIE
Sbjct: 255 MLNEPVQEAGGQGGGGGGGSGGIAEAGSGHMNYIQVTPQEKEAIE 299
>gi|195133968|ref|XP_002011410.1| GI14087 [Drosophila mojavensis]
gi|193912033|gb|EDW10900.1| GI14087 [Drosophila mojavensis]
Length = 442
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 100/353 (28%), Positives = 161/353 (45%), Gaps = 51/353 (14%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + +K L+ F I+ PE V ++K I +G++ Y +Q LI+ G +L D T+
Sbjct: 1 MIITIKNLQQQTFAIDFDPEKTVLELKNQIFYERGAE-YLVEKQKLIYAGVILTDERTIS 59
Query: 61 ENKVAENSFVVVMLTKSKVSSS-----------------GAST-VSAAPANQAQTTSSAP 102
KV E F+VVML++ +S G++T + P Q SSA
Sbjct: 60 SYKVDEKKFIVVMLSRDISGTSSNTNADGQRKQPNEQMEGSTTGIDKKPVLQNANASSAE 119
Query: 103 PTSTQPTTTS-QTPAPTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQ 161
S + S ++ A P PA + +++ S + +
Sbjct: 120 KGIINNNNRSNDVLGVEIERSGSSSQTQISTAPEVPIPATDYSSIDLVGELANAS-LQSR 178
Query: 162 AASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP 221
A SNL+ G TV +++MG + R+ V RA+ A++NNPERAVEYL +GIP
Sbjct: 179 AESNLLMGEEFNRTVASMVEMG---YPRDQVERAMAASFNNPERAVEYLINGIP------ 229
Query: 222 PVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLR 281
Q + P PN GLP + + A +FLR
Sbjct: 230 ------------------QDENLFNPGDEEEPNRVETSHRQGGLP---AESAADPFEFLR 268
Query: 282 NSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVE 334
+ QF +R+++ NP +L +LQ++G+ NP L++LI E+Q FL ++N+P++
Sbjct: 269 SQPQFLQMRSLIYQNPHLLHAVLQQIGQTNPALLQLISENQDAFLNMLNQPLD 321
>gi|406602239|emb|CCH46169.1| putative DNA repair protein RAD23-3 [Wickerhamomyces ciferrii]
Length = 394
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 120/395 (30%), Positives = 177/395 (44%), Gaps = 72/395 (18%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V K K IE++P + V K+ + V+G +V Q ++ GKVL+D T+E
Sbjct: 1 MQVIFKDFKKEKIPIELEPTETVLQAKEKLAQVKGVEV---KQLKFVYSGKVLQDDKTIE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
K+ + V+ M++K ++ PT P ++ TPAP
Sbjct: 58 STKIKADDQVIFMISK---------------------VAAKKPT---PAASTPTPAPAAQ 93
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPA-PAPVSSVSDVYGQAASNLVAGSNLEATVQQI 179
P Q +SAP + PAPAP+ A P P AS GS E + I
Sbjct: 94 PTQPTAQSAPVQPSTRTVPAPAPSSQSAQPTPSQQPEQAGDFDASTFATGSAREKAIANI 153
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGI-------------PEQTAVPPVARA 226
++MG ++R V +ALRAA+NNP+RAVEYL +GI TAV
Sbjct: 154 MEMG---YERPQVEQALRAAFNNPDRAVEYLLTGIPEQFQQQAQQSQPQPPTAVEESGEQ 210
Query: 227 SAGGQAGNPPAQTQAQQPAAPAPT-SGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQ- 284
+ G G A QP+AP+ T A DLF G N G+G+ +
Sbjct: 211 TEGSNTG-----ATATQPSAPSGTEEHSTAESGDLFAAAAAAAGGNPGSGSSPGASHRTG 265
Query: 285 ------QFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLI----NEPVE 334
+R +V+ NP++L+P+L++L +Q P L LIQ++ +F+ +I NE
Sbjct: 266 GAPSGGGLDQIREIVRTNPEMLEPLLEQLSQQYPQLNGLIQQNPEEFINMILNGVNEDEL 325
Query: 335 GGEGNVLGQLASAMPQA-------VTVTPEEREAI 362
GEG LG PQA V +T E++ AI
Sbjct: 326 SGEG--LG--TEVAPQAGEDGTVEVPITEEDQAAI 356
>gi|194225605|ref|XP_001916027.1| PREDICTED: UV excision repair protein RAD23 homolog B isoform 1
[Equus caballus]
Length = 336
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 94/270 (34%), Positives = 133/270 (49%), Gaps = 42/270 (15%)
Query: 112 SQTPAPTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSV-----SDVYGQAASNL 166
S TPA T A + P SA PA PA AP + S+ S+++ A S L
Sbjct: 53 SITPASTTASSEPAPASATKQEKPAEKPAEAPVATSPTSTDSTSGDSSRSNLFEDATSAL 112
Query: 167 VAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP----EQTAVPP 222
V G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP Q V P
Sbjct: 113 VTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAVVDP 169
Query: 223 VARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRN 282
AS G + A +SG G P L+FLRN
Sbjct: 170 PPAASTGAPQSSVAAAAATTTATTTTTSSG-----------GHP----------LEFLRN 208
Query: 283 SQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG------ 336
QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F++++NEPV+
Sbjct: 209 QPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQGGG 268
Query: 337 ---EGNVLGQLASAMPQAVTVTPEEREAIE 363
+ + S + VTP+E+EAIE
Sbjct: 269 GGGGSGGIAEAGSGHMNYIQVTPQEKEAIE 298
>gi|66363310|ref|XP_628621.1| RAD23p, UB+UBA domains protein [Cryptosporidium parvum Iowa II]
gi|46229830|gb|EAK90648.1| RAD23p, UB+UBA domains protein [Cryptosporidium parvum Iowa II]
Length = 362
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 107/366 (29%), Positives = 181/366 (49%), Gaps = 71/366 (19%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ ++T++ T E+EV+ + + VK+ I+ + + V AS+ LI G++L D T++
Sbjct: 22 MKIKIRTVQNTEMEVEVEADYSIEKVKQAIQEL--NPVMEASRLKLIFAGRILNDSQTVQ 79
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ + E +VV+L+K GAS +A Q +S +
Sbjct: 80 DVGIKEGERLVVLLSK------GASQKAAESQQNKQNNTSNESNT--------------- 118
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
+ P A+ + A + P+ S AS L+ G+ LE T+ I+
Sbjct: 119 -------NTDPAASATTSNIQAQSGNSDPSIDSR--------ASALLTGTELEKTITNIV 163
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP--PVARASAGGQAGNPPAQ 238
+MG ++RE V RA+RAA+NNP+RAVEYL SG+P +P PVA P
Sbjct: 164 NMG---FEREQVTRAMRAAFNNPDRAVEYLTSGLP----IPENPVA-----------PNH 205
Query: 239 TQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQ 298
T + A + + DL + LP G L+ LR + FQ LR++VQ +P+
Sbjct: 206 TNITPVNSNASLNAGLTSSEDLSSEQLP--------GNLESLRTNPLFQQLRSVVQQDPR 257
Query: 299 ILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASA-MPQAVTVTPE 357
IL +L +G+ NP +++LI E+Q +F+R++ E + + +G+ + M + +TP+
Sbjct: 258 ILPELLVRIGQSNPEILQLITENQEEFIRMM----ERTDSDEVGETSQFPMQTTIQLTPQ 313
Query: 358 EREAIE 363
E E++E
Sbjct: 314 EAESVE 319
>gi|323509241|dbj|BAJ77513.1| cgd7_4730 [Cryptosporidium parvum]
Length = 341
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 107/366 (29%), Positives = 181/366 (49%), Gaps = 71/366 (19%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ ++T++ T E+EV+ + + VK+ I+ + + V AS+ LI G++L D T++
Sbjct: 1 MKIKIRTVQNTEMEVEVEADYSIEKVKQAIQEL--NPVMEASRLKLIFAGRILNDSQTVQ 58
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ + E +VV+L+K GAS +A Q +S +
Sbjct: 59 DVGIKEGERLVVLLSK------GASQKAAESQQNKQNNTSNESNT--------------- 97
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
+ P A+ + A + P+ S AS L+ G+ LE T+ I+
Sbjct: 98 -------NTDPAASATTSNIQAQSGNSDPSIDSR--------ASALLTGTELEKTITNIV 142
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP--PVARASAGGQAGNPPAQ 238
+MG ++RE V RA+RAA+NNP+RAVEYL SG+P +P PVA P
Sbjct: 143 NMG---FEREQVTRAMRAAFNNPDRAVEYLTSGLP----IPENPVA-----------PNH 184
Query: 239 TQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQ 298
T + A + + DL + LP G L+ LR + FQ LR++VQ +P+
Sbjct: 185 TNITPVNSNASLNAGLTSSEDLSSEQLP--------GNLESLRTNPLFQQLRSVVQQDPR 236
Query: 299 ILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASA-MPQAVTVTPE 357
IL +L +G+ NP +++LI E+Q +F+R++ E + + +G+ + M + +TP+
Sbjct: 237 ILPELLVRIGQSNPEILQLITENQEEFIRMM----ERTDSDEVGETSQFPMQTTIQLTPQ 292
Query: 358 EREAIE 363
E E++E
Sbjct: 293 EAESVE 298
>gi|26337167|dbj|BAC32268.1| unnamed protein product [Mus musculus]
Length = 296
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 109/332 (32%), Positives = 161/332 (48%), Gaps = 56/332 (16%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D ++E
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIKEY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
+ E +FVVVM+TK+K A AP + T P T P S P PP
Sbjct: 65 HIDEKNFVVVMVTKAK-----AGQGIPAPPEASPTAVPEPSTPFPPVLASGMSHP---PP 116
Query: 123 QSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILDM 182
S + +P + +P P S S AAS LV GS E + +I+ M
Sbjct: 117 TSREDKSP---SEESTTTTSPESISGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSM 173
Query: 183 GGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNP-PAQTQA 241
G ++RE V+ ALRA+YNNP RAVEYL +GIP G+P P
Sbjct: 174 G---YERERVVAALRASYNNPHRAVEYLLTGIP-----------------GSPEPEHGSV 213
Query: 242 QQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQ 301
Q+ AP + AG L+FLR+ QFQ +R ++Q NP +L
Sbjct: 214 QESQAPE------------------QPATEAGENPLEFLRDQPQFQNMRQVIQQNPALLP 255
Query: 302 PMLQELGKQNPHLM------RLIQEHQTDFLR 327
+LQ+LG++NP L+ R +++ + FLR
Sbjct: 256 ALLQQLGQENPQLLQVRPRVRELRQPPSQFLR 287
>gi|393911377|gb|EFO15597.2| UV excision repair protein Rad23 [Loa loa]
Length = 337
Score = 124 bits (310), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 103/330 (31%), Positives = 146/330 (44%), Gaps = 84/330 (25%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + KT+ FEIE+ P + +VK I +G YP Q LI+ GKVL D T+E
Sbjct: 1 MLITFKTIAQVSFEIELDPHLTIGEVKAKIAEEKGEVEYPIECQKLIYNGKVLDDAQTVE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E + + FVV+M+ + K V A PA S+ P++ Q +Q T
Sbjct: 61 EVMIDPSKFVVIMIARKK-------PVGATPAE-----STPQPSNLQIPAAAQV---TTV 105
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P SV +++ PAAP + P E T Q I+
Sbjct: 106 TPASVTDNS--PAAPQNSDGLTPEQ---------------------------EETAQAIV 136
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
MG + R+ VIRALRA++ N +RAVEYL SGIPE+ + GG Q
Sbjct: 137 AMG---YSRDKVIRALRASFFNGDRAVEYLCSGIPEEEDL--------GGH------QES 179
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQIL 300
A+ G LDFLR QF+ LR +VQ+NP +L
Sbjct: 180 AEHEE-----------------------GERGQGLGLDFLRQLPQFEQLRELVQSNPALL 216
Query: 301 QPMLQELGKQNPHLMRLIQEHQTDFLRLIN 330
++Q++ + NP LM IQ +Q +F+ L+N
Sbjct: 217 PQIIQQIAQSNPALMEAIQNNQEEFVNLLN 246
>gi|315049547|ref|XP_003174148.1| nucleotide excision repair protein RAD23 [Arthroderma gypseum CBS
118893]
gi|311342115|gb|EFR01318.1| nucleotide excision repair protein RAD23 [Arthroderma gypseum CBS
118893]
Length = 380
Score = 124 bits (310), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 126/379 (33%), Positives = 195/379 (51%), Gaps = 56/379 (14%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ + LK F IE +P +K+ DVK+ I T +G +PASQQ LI+ GK+L+D T+E
Sbjct: 1 MKLTFRDLKQQKFVIEAEPSEKILDVKEKIATEKG---WPASQQKLIYSGKILQDDNTVE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ E F+V M++K K ++ A+ S++ A + P T + P +
Sbjct: 58 SYSIEEKGFIVCMVSKPKAAAPSAAAASSSQTPAAAPPAPTPATPSAPARVN-------- 109
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
APP PA P+PA + + ++ +D S L+ G+ + + Q+L
Sbjct: 110 --------APPLQTPA-TPSPAGGASSGASSGATFND-----PSALLMGNQGQEAITQML 155
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
MG + R + RA+RAAY NP+RA+EYL +GIP++ P SA PA T+
Sbjct: 156 AMG---FSRGDIDRAMRAAYFNPDRAIEYLLNGIPDE---PEREAPSAPAAGSARPAATE 209
Query: 241 A-------------QQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQ 287
+Q AA A G + G + S G+L+FLRN+ FQ
Sbjct: 210 GASESQVQESLNLFEQAAAQASGGGSGRSRGAGAGAGAGSGESAGSLGSLEFLRNNPHFQ 269
Query: 288 ALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASA 347
LR +VQ PQ+L+P+LQ++G NP L +LI ++Q FL+L++E V+ +
Sbjct: 270 QLRQLVQQQPQMLEPILQQVGAGNPQLAQLIGQNQEQFLQLLSEDVDD---------ETQ 320
Query: 348 MP---QAVTVTPEEREAIE 363
+P Q+++VT EER+AIE
Sbjct: 321 LPPGAQSISVTEEERDAIE 339
>gi|331230142|ref|XP_003327736.1| UV excision repair protein Rad23 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309306726|gb|EFP83317.1| UV excision repair protein Rad23 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 409
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 124/396 (31%), Positives = 171/396 (43%), Gaps = 67/396 (16%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ KTL+ F ++V+P V +K I+ QG + QQ LI GKVL D T+E
Sbjct: 1 MKLTFKTLQKQQFVLDVEPSTTVEKLKSLIKESQG---FEPEQQKLIFSGKVLADDKTIE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ V E F VVML K K A TV A P S + A
Sbjct: 58 QIGVKEKDFFVVMLIKPKT----APTVPA-------------PASVPSGAGAAASTSATA 100
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAP-APAPAPVSSVSDVYGQAASNLVAGSNLEATVQQI 179
P + + A + APA A A A P S D + GSNL+ T+ +I
Sbjct: 101 PTPAAAQPATATPSSTTAPASTDADNASAATPASGTQD------PGFLVGSNLQKTIDEI 154
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE--QTAVPPVA------------- 224
++ G + RE V +A+RAA+NNP+RAVEYL +GIP PPV
Sbjct: 155 VN--GMGFPREQVTKAMRAAFNNPDRAVEYLMTGIPAGLDAPAPPVTLPTNAPSTVNPSA 212
Query: 225 -------RASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTL 277
+AG + A Q P + P A P Q +P + L
Sbjct: 213 TTPSAAAAPAAGSRNLFEAAAEHVAQQRQPGEAALPTAEPAQAGAQSIPT------SRAL 266
Query: 278 DFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGE 337
+ LRN+ Q LR +VQ NP +LQP LQ+LG+ NP+L+ + + T + + E EG +
Sbjct: 267 EALRNNPQMIQLRQLVQQNPNLLQPFLQQLGQSNPNLLTQLTSNPTLLMSFLAEGAEGLD 326
Query: 338 GN----------VLGQLASAMPQAVTVTPEEREAIE 363
+ Q V V+ EER+AIE
Sbjct: 327 DDSSLPPGMMGGAGAGGPEDQTQYVQVSQEERDAIE 362
>gi|331250500|ref|XP_003337858.1| UV excision repair protein Rad23 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309316848|gb|EFP93439.1| UV excision repair protein Rad23 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 409
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 124/396 (31%), Positives = 171/396 (43%), Gaps = 67/396 (16%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ KTL+ F ++V+P V +K I+ QG + QQ LI GKVL D T+E
Sbjct: 1 MKLTFKTLQKQQFVLDVEPSTTVEKLKSLIKESQG---FEPEQQKLIFSGKVLADDKTIE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ V E F VVML K K A TV A P S + A
Sbjct: 58 QIGVKEKDFFVVMLIKPKT----APTVPA-------------PASVPSGAGAAASTSATA 100
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAP-APAPAPVSSVSDVYGQAASNLVAGSNLEATVQQI 179
P + + A + APA A A A P S D + GSNL+ T+ +I
Sbjct: 101 PTPAAAQPATATPSSTTAPASTDADNASAATPASGTQD------PGFLVGSNLQKTIDEI 154
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP--PVA------------- 224
++ G + RE V +A+RAA+NNP+RAVEYL +GIP P PV
Sbjct: 155 VN--GMGFPREQVTKAMRAAFNNPDRAVEYLMTGIPAGLDAPAAPVTLPTNAPSTVNPSA 212
Query: 225 -------RASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTL 277
+AG + A Q P + P A P Q +P + L
Sbjct: 213 TTPSAAAAPAAGSRNLFEAAAEHVAQQRQPGEAALPTAEPAQAGAQSIPT------SRAL 266
Query: 278 DFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGE 337
+ LRN+ Q LR +VQ NP +LQP LQ+LG+ NP+L+ + + T + + E EG +
Sbjct: 267 EALRNNPQMIQLRQLVQQNPNLLQPFLQQLGQSNPNLLTQLTSNPTLLMSFLAEGAEGLD 326
Query: 338 GN----------VLGQLASAMPQAVTVTPEEREAIE 363
+ Q V V+ EER+AIE
Sbjct: 327 DDPSLPPGMMGGAGAGGPEDQTQYVQVSQEERDAIE 362
>gi|344228919|gb|EGV60805.1| hypothetical protein CANTEDRAFT_137273 [Candida tenuis ATCC 10573]
gi|344228920|gb|EGV60806.1| UV excision repair protein Rad23 [Candida tenuis ATCC 10573]
Length = 356
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 102/332 (30%), Positives = 154/332 (46%), Gaps = 56/332 (16%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++ K K I+V+ +D V K+ + + + DV SQ ++ GKVL D +L
Sbjct: 1 MQITFKDFKKQKLTIDVEVDDTVLKTKETVASQKSCDV---SQLKFVYSGKVLADDQSLG 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
K+ E ++ M++K+K V A PPT+ +S++
Sbjct: 58 SYKIKEGDSIIYMISKAK-----KPVVPVAE----------PPTAATTGDSSES------ 96
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
+A P AP P+ A APVS +A S GS EAT+Q I+
Sbjct: 97 -------AASEPVAPTPS-------ATTVAPVSE------EAGSAFAQGSEREATIQNIM 136
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE--QTAVPPVARASAGGQAGNPPAQ 238
+MG +DR+ V +ALRAA+NNP RAVEYL +GIPE Q V P A A+
Sbjct: 137 EMG---YDRDQVEQALRAAFNNPHRAVEYLLTGIPESLQQPVEPPTAVEEDVDATPVAAE 193
Query: 239 TQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGT----LDFLRNSQQFQALRTMVQ 294
T TS N N LF ++AG G + L ++ Q Q LR +Q
Sbjct: 194 TTQDDKDHDHDTSDRNVN---LFEAAAAANNASAGEGDASDPVGELDDAAQLQLLREAIQ 250
Query: 295 ANPQILQPMLQELGKQNPHLMRLIQEHQTDFL 326
NP+++ +L+++ + NPH+ +LIQ+ F+
Sbjct: 251 TNPELIHELLEQISRSNPHIAQLIQQDPEGFI 282
>gi|295665738|ref|XP_002793420.1| hypothetical protein PAAG_04949 [Paracoccidioides sp. 'lutzii'
Pb01]
gi|226278334|gb|EEH33900.1| hypothetical protein PAAG_04949 [Paracoccidioides sp. 'lutzii'
Pb01]
Length = 375
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 127/386 (32%), Positives = 178/386 (46%), Gaps = 74/386 (19%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ + LK F IE +P + + +K+ I +G DV + Q LI+ GK+L+D T+E
Sbjct: 1 MKLTFRDLKQQKFVIEAEPSETIGQLKERISQERGWDV---ALQKLIYSGKILQDENTIE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ E F+V M+TK K ++ A T+S AP T ++ +
Sbjct: 58 SYNIEEKGFIVCMVTKPKTTTPAA------------TSSQAPSTPAPAVASTPAAPAPAS 105
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
PQ+ A A A A P S L+ G E + Q+
Sbjct: 106 NPQTTDAPATTSPAAPAAAGGATFNDP----------------SALLMGPQGEQVIAQME 149
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
MG + R + RA+RAA+ NP+RA+EYL +GIPE S Q PA T
Sbjct: 150 SMG---FPRSDIDRAMRAAFFNPDRAIEYLLNGIPE---------TSQAEQREAAPATTA 197
Query: 241 AQQPAAPAPTSGPNANPLDLFP---------------------QGLPNMGSNAGA--GTL 277
PAAPA T G ++LF QGL G G L
Sbjct: 198 PSGPAAPAATGGDEH--VNLFEAAAQAGAPQGGGAGRGARATGQGLATAAEGQGGSLGNL 255
Query: 278 DFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGE 337
DFLRN+ FQ LR +VQ PQ+L+P+LQ++G NP L +LI ++Q FL+L++E +E
Sbjct: 256 DFLRNNPHFQQLRQLVQQQPQMLEPILQQVGAGNPQLAQLIGQNQDQFLQLLSEDIEDD- 314
Query: 338 GNVLGQLASAMPQAVTVTPEEREAIE 363
QL Q +TVT EER+AIE
Sbjct: 315 ----AQLPPGTHQ-ITVTEEERDAIE 335
>gi|412992628|emb|CCO18608.1| predicted protein [Bathycoccus prasinos]
Length = 392
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 117/401 (29%), Positives = 173/401 (43%), Gaps = 87/401 (21%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLI--HQGKVLKDVTT 58
MK+ +KTL FEIE+ K + ++ ++G A L+ H+G+VL+D T
Sbjct: 1 MKIHLKTLTAQKFEIEISDPSKTTILQCKKLAIEGQPQLGAETDFLVFVHKGQVLEDEKT 60
Query: 59 LEENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPT 118
+ ++++++ G V + + +P + AP
Sbjct: 61 V---------------SEAEITEDGFVVVMS-------------KKTKKPAEKTTAAAPA 92
Query: 119 VAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQ 178
A P + A A PVSS LV G+ LE +++
Sbjct: 93 PANPPATSAPDVAAPVAPAAAVAMAPQTTAEVPVSS---------PGLVVGAELEKAIEE 143
Query: 179 ILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQ 238
+ MG + R+ + ALRAA+NNP+RAVEYL +GIPE V A +A A
Sbjct: 144 LQAMG---FPRDQCVAALRAAFNNPDRAVEYLLNGIPEGMMVSAPAANAAAAAPPPAAAP 200
Query: 239 TQAQQPAAPAPTS-------------------GPNANPLDLFPQGLP-NMGSNAG----- 273
A T+ + PL+LFPQG+P N+ +
Sbjct: 201 GADAAAANAVRTAEGATASAPGVGAGGAPPAAADGSAPLNLFPQGIPANLAAAGAGGAEE 260
Query: 274 ------AGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLR 327
TL FLR++ QFQA+R MVQ NP ILQPML EL +QNP L LI +Q +FL+
Sbjct: 261 EAQEGEVNTLAFLRDNPQFQAIRAMVQGNPSILQPMLGELQRQNPQLYHLINSNQEEFLQ 320
Query: 328 LINEPVEG-----GEGNVLGQLASAMPQAVTVTPEEREAIE 363
L+NEP + GEG + + + ++ EE EA E
Sbjct: 321 LLNEPSDFEAQGMGEGEM---------EQIELSKEENEACE 352
>gi|218190702|gb|EEC73129.1| hypothetical protein OsI_07141 [Oryza sativa Indica Group]
Length = 242
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 65/97 (67%), Positives = 74/97 (76%), Gaps = 12/97 (12%)
Query: 156 SDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 215
+D+YGQAASNLVAGSNLE TVQ IL+MGGG+WDR+TV+RAL AAYNNPERAVEYLY+G+P
Sbjct: 158 ADIYGQAASNLVAGSNLEGTVQSILEMGGGAWDRDTVMRALGAAYNNPERAVEYLYTGLP 217
Query: 216 EQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSG 252
EQ A ASA QA + PA QA PTSG
Sbjct: 218 EQ------AEASAVVQALSVPAAVQA------FPTSG 242
>gi|426219746|ref|XP_004004079.1| PREDICTED: UV excision repair protein RAD23 homolog B [Ovis aries]
Length = 336
Score = 121 bits (304), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 91/270 (33%), Positives = 130/270 (48%), Gaps = 42/270 (15%)
Query: 112 SQTPAPTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSV-----SDVYGQAASNL 166
S TPA T A + P S PA P P + S+ S+++ A S L
Sbjct: 53 SVTPASTTASSEPAPASVTKQEKPAERPVETPVATTPTSTDSTSGDSSRSNLFEDATSAL 112
Query: 167 VAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP----EQTAVPP 222
V G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP Q V P
Sbjct: 113 VTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAVVDP 169
Query: 223 VARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRN 282
AS G + A +SG G P L+FLRN
Sbjct: 170 PPTASTGAPQSSVAAAAATTTATTTTASSG-----------GHP----------LEFLRN 208
Query: 283 SQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG------ 336
QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F++++NEPV+
Sbjct: 209 QPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQGGG 268
Query: 337 ---EGNVLGQLASAMPQAVTVTPEEREAIE 363
+ + S + VTP+E+EAIE
Sbjct: 269 GGGGSGGIAEAGSGHMNYIQVTPQEKEAIE 298
>gi|449676312|ref|XP_002169219.2| PREDICTED: UV excision repair protein RAD23 homolog B-like [Hydra
magnipapillata]
Length = 343
Score = 120 bits (302), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 108/371 (29%), Positives = 170/371 (45%), Gaps = 70/371 (18%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + +KTL+ F+IEV DKV +K+ I +GS+ +P Q LI+ GK+L D L
Sbjct: 1 MLITLKTLQQKTFKIEVDENDKVFALKELIAKEKGSE-FPIECQRLIYSGKILDDDKALC 59
Query: 61 ENKVA-ENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTV 119
E + +FVVVM K KV + S ++ Q S+ + QP S TP T
Sbjct: 60 EYNIDPVKNFVVVMSVKPKVVTKDGDKSSGVGSSTPQVESTVSMETVQP---SSTPLLT- 115
Query: 120 APPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQI 179
S + + A + P D+ ++ + GS L++++ ++
Sbjct: 116 --------STASASETTSVSTTSTAVSSQP-------DI----GTSFLTGSALDSSINEL 156
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 239
+ +G + RE V+RAL+ ++ N +RA EYL SG VP + + P
Sbjct: 157 MSLG---FSREQVLRALQRSFQNADRAAEYLLSG-----NVPELVE--------DAPGDI 200
Query: 240 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGA-GTLDFLRNSQQFQALRTMVQANPQ 298
+ A PA + GA G L+FLR+ QF+ +R+ VQ +P
Sbjct: 201 DEESEALPA----------------------DVGAEGDLNFLRDFPQFRMMRSQVQRHPD 238
Query: 299 ILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEG------GEGNVLGQLASAMPQAV 352
L +LQE+G+ NP L++LI ++Q F+ L+NEP G E G + +
Sbjct: 239 TLPQLLQEIGRSNPQLLQLISQNQEAFIALLNEPETGESSAPVSEDAFGGDAGAGGGFQI 298
Query: 353 TVTPEEREAIE 363
VT EE+ AI+
Sbjct: 299 HVTTEEKAAID 309
>gi|296418227|ref|XP_002838743.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295634704|emb|CAZ82934.1| unnamed protein product [Tuber melanosporum]
Length = 385
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 124/384 (32%), Positives = 184/384 (47%), Gaps = 60/384 (15%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ K LK F I+ +P D +S VK+ I +G D A+ Q LI+ GK+L+D T+
Sbjct: 1 MKLTFKDLKQQKFVIDAEPTDTISQVKEKINKEKGWD---AAAQKLIYSGKILQDDKTVG 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ K+ E FVV M +S P + ++++ +++ P TPA +
Sbjct: 58 DYKIEEKGFVVCM-------------ISNKPKAASSSSAAGSSSASTPVKAPSTPAQSSV 104
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
PP SAP A + + + A P P +V G+ I+
Sbjct: 105 PPTP---SAPAQAVTGSSTSTSAAVPETPTPAGAV-------------GTTFNDPEDAIV 148
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASA----GGQAGNPP 236
+M G ++R + RA+RAA+ NP+RAV+YL +GIPE A++S A +
Sbjct: 149 NMMGMGFERSEIERAMRAAFFNPDRAVDYLLNGIPEHLTQERPAQSSTTRPAAQSAQSAA 208
Query: 237 AQTQAQQPAAPAPTSGPNANP--LDLFPQ---------GLPNMGSNAGA---GTLDFLRN 282
A PA SG A P ++LF G + G + GA G LDFLRN
Sbjct: 209 RPAAATAPATGGSASGEGAEPENINLFEAAAAAASQRGGAHSQGRSGGAASLGNLDFLRN 268
Query: 283 SQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLG 342
+ QFQ LR +VQ PQ+L+P+LQ++G NP L I + FLRL++E +G
Sbjct: 269 NPQFQQLRQVVQQQPQMLEPILQQVGMGNPQLAATISSNPEAFLRLLSEDPADEDG---- 324
Query: 343 QLASAMP---QAVTVTPEEREAIE 363
A+P ++VTPEE +AIE
Sbjct: 325 ---GALPPGSNHISVTPEESDAIE 345
>gi|317138690|ref|XP_001817078.2| UV excision repair protein rhp23 [Aspergillus oryzae RIB40]
gi|391863231|gb|EIT72542.1| nucleotide excision repair factor NEF2, RAD23 component
[Aspergillus oryzae 3.042]
Length = 378
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 127/395 (32%), Positives = 182/395 (46%), Gaps = 89/395 (22%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ K LK F I+ +P + V VK+ I +G +V Q LI+ GK+L+D +E
Sbjct: 1 MKLTFKDLKQQKFVIDAEPSETVGQVKEKISKEKGWEV---PQLKLIYSGKILQDDKAIE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ E F+V M++K K SSS A T S AP+ ++ +S P P ++ A
Sbjct: 58 SYNIEEKGFIVCMVSKPKASSSTA-TPSQAPSTPSRAATSTPAAPPAPAPSTNASATAPP 116
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
S + P SD S L++GS EA + +
Sbjct: 117 ATPSPAAATQP------------------------SDAAFNDPSALLSGSQGEAVISHME 152
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAV-------------------- 220
MG + R+ + RA+RAA+ NP RA+EYL +GIPE
Sbjct: 153 SMG---FPRDDINRAMRAAFFNPTRAIEYLLNGIPENIQQEQEQQQQQQQAATATAASPQ 209
Query: 221 PPVARASAGGQAGNPPAQTQAQQP------AAPAPT-SGPNANPLDLFPQGLPNMGSNAG 273
PP A A GN PA T ++P AA A T GP+ GS AG
Sbjct: 210 PPAASA-----GGNAPATTGGEEPVNLFEAAAQAGTQEGPHG----------ARSGSAAG 254
Query: 274 AG--TLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINE 331
G LDFLRN+ FQ LR +VQ PQ+L+P+LQ++ NP + +LI +++ FL+L++E
Sbjct: 255 EGLPNLDFLRNNPHFQQLRQLVQQQPQMLEPILQQVAAGNPQIAQLIGQNEEQFLQLLSE 314
Query: 332 PVEGGEGNVLGQLASAMP---QAVTVTPEEREAIE 363
+G A+P + VT EER+AIE
Sbjct: 315 EGDG-----------ALPPGTHQIHVTEEERDAIE 338
>gi|237844371|ref|XP_002371483.1| UV excision repair protein rhp23, putative [Toxoplasma gondii ME49]
gi|95007044|emb|CAJ20260.1| DNA repair protein rad23 homolog b, putative [Toxoplasma gondii RH]
gi|211969147|gb|EEB04343.1| UV excision repair protein rhp23, putative [Toxoplasma gondii ME49]
gi|221501783|gb|EEE27543.1| UV excision repair protein rhp23, putative [Toxoplasma gondii VEG]
Length = 380
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 113/366 (30%), Positives = 176/366 (48%), Gaps = 32/366 (8%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ ++TL E+EV E+ V +VK+ +E Q PA++Q L+H GK+L D ++
Sbjct: 1 MKLRIRTLSNEEAELEVGAEETVLNVKEKVE--QRWPHMPAARQKLVHAGKILADAQKIK 58
Query: 61 E-NKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTV 119
+ + + EN +VVM+TK+ + +S+ +A+ A + + S T + T
Sbjct: 59 DCSALKENDRLVVMVTKAVSQPAVSSSTAASAAPASAASPSPAETQRGSSAAGSTAGDGE 118
Query: 120 APPQSVPESAPPPAAPAPAPA-PAPAPAPAPAPVSSVSDVYGQAA-SNLVAGSNLEATVQ 177
+ P + + + PA PA A +P+ AP ++ + AA S L G LE T+
Sbjct: 119 SAKSETPGGSGNASGNSGGPANPAHASSPSSAPDATSEGLSRAAAESALFTGPQLEETLT 178
Query: 178 QILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPA 237
++ MG + R A+RAA+NNP+RAVEYL +G+P P A GG + A
Sbjct: 179 HLVAMG---FPRSQAEEAMRAAFNNPDRAVEYLMNGMP------PEVSAMLGGDS----A 225
Query: 238 QTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANP 297
+TQ P + D P G LR+ F +R MVQANP
Sbjct: 226 ETQEAHGDVPPEEGDAEGDEDDENPLGA--------------LRHHPAFNQIRQMVQANP 271
Query: 298 QILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPE 357
+L +LQ +G NP L+ LI ++Q FL ++ GE G A P + +T E
Sbjct: 272 AMLPQVLQLIGNSNPQLLELITQNQDAFLEMLQSDQGEGETGAAGTGGFAAPGIIQMTAE 331
Query: 358 EREAIE 363
E EA++
Sbjct: 332 EMEALQ 337
>gi|395740795|ref|XP_003777470.1| PREDICTED: UV excision repair protein RAD23 homolog B-like isoform
2 [Pongo abelii]
Length = 337
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 81/225 (36%), Positives = 119/225 (52%), Gaps = 38/225 (16%)
Query: 153 SSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYS 212
SS S+++ A S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL
Sbjct: 99 SSRSNLFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLM 155
Query: 213 GIP---EQTAV--PPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPN 267
GIP E AV PP A ++ Q+ A +SG G P
Sbjct: 156 GIPGDRESQAVVDPPQAASTGAPQSSAVAAAAATTTATTTTTSSG-----------GHP- 203
Query: 268 MGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLR 327
L+FLRN QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F++
Sbjct: 204 ---------LEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQ 254
Query: 328 LINEPVEGG---------EGNVLGQLASAMPQAVTVTPEEREAIE 363
++NEPV+ + + S + VTP+E+EAIE
Sbjct: 255 MLNEPVQEAGGQGGGGGGGSGGIAEAGSGHMNYIQVTPQEKEAIE 299
>gi|221481235|gb|EEE19636.1| UV excision repair protein rad23, putative [Toxoplasma gondii GT1]
Length = 348
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 113/366 (30%), Positives = 176/366 (48%), Gaps = 32/366 (8%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ ++TL E+EV E+ V +VK+ +E Q PA++Q L+H GK+L D ++
Sbjct: 1 MKLRIRTLSNEEAELEVGAEETVLNVKEKVE--QRWPHMPAARQKLVHAGKILADAQKIK 58
Query: 61 E-NKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTV 119
+ + + EN +VVM+TK+ + +S+ +A+ A + + S T + T
Sbjct: 59 DCSALKENDRLVVMVTKAVSQPAVSSSTAASAAPASAASPSPAETQRGSSAAGSTAGDGE 118
Query: 120 APPQSVPESAPPPAAPAPAPA-PAPAPAPAPAPVSSVSDVYGQAA-SNLVAGSNLEATVQ 177
+ P + + + PA PA A +P+ AP ++ + AA S L G LE T+
Sbjct: 119 SAKSETPGGSGNASGNSGGPANPAHASSPSSAPDATSEGLSRAAAESALFTGPQLEETLT 178
Query: 178 QILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPA 237
++ MG + R A+RAA+NNP+RAVEYL +G+P P A GG + A
Sbjct: 179 HLVAMG---FPRSQAEEAMRAAFNNPDRAVEYLMNGMP------PEVSAMLGGDS----A 225
Query: 238 QTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANP 297
+TQ P + D P G LR+ F +R MVQANP
Sbjct: 226 ETQEAHGDVPPEEGDAEGDEDDENPLGA--------------LRHHPAFNQIRQMVQANP 271
Query: 298 QILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPE 357
+L +LQ +G NP L+ LI ++Q FL ++ GE G A P + +T E
Sbjct: 272 AMLPQVLQLIGNSNPQLLELITQNQDAFLEMLQSDQGEGETGAAGTGGFAAPGIIQMTAE 331
Query: 358 EREAIE 363
E EA++
Sbjct: 332 EMEALQ 337
>gi|225679426|gb|EEH17710.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb03]
Length = 379
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 128/386 (33%), Positives = 178/386 (46%), Gaps = 70/386 (18%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ + LK F IE +P + + +K+ I +G DV + Q LI+ GK+L+D T+E
Sbjct: 1 MKLTFRDLKQQKFVIEAEPSETIGQLKERISQERGWDV---ALQKLIYSGKILQDENTIE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ E F+V M+TK K ++ A T+S AP T T ++ +
Sbjct: 58 SYNIEEKGFIVCMVTKPKTTTPAA------------TSSQAPSTPTPAVASTPAAPAPAS 105
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
PQ A A A A P S L+ G E + Q+
Sbjct: 106 NPQPTDAPATSTPAAPAPAPAAAGGATFNDP------------SALLMGPQGEQVIAQME 153
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
MG + R + RA+RAA+ NP+RA+EYL +GIPE S Q PA T
Sbjct: 154 SMG---FPRSDIDRAMRAAFFNPDRAIEYLLNGIPE---------TSQAEQREAAPATTA 201
Query: 241 AQQPAAPAPTSGPNANPLDLFP---------------------QGLPNM--GSNAGAGTL 277
PAAPA T G ++LF QGL G G L
Sbjct: 202 PSGPAAPAATGGDEH--VNLFEAAAQAGAPQGGGAGRGARATGQGLAAAAEGQQGSLGNL 259
Query: 278 DFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGE 337
DFLRN+ FQ LR +VQ PQ+L+P+LQ++G NP L +LI ++Q FL+L++E +E
Sbjct: 260 DFLRNNPHFQQLRQLVQQQPQMLEPILQQVGAGNPQLAQLIGQNQDQFLQLLSEDIEDD- 318
Query: 338 GNVLGQLASAMPQAVTVTPEEREAIE 363
QL Q +TVT EER+AIE
Sbjct: 319 ----AQLPPGTHQ-ITVTEEERDAIE 339
>gi|170590706|ref|XP_001900112.1| UV excision repair protein Rad23 containing protein [Brugia malayi]
gi|158592262|gb|EDP30862.1| UV excision repair protein Rad23 containing protein [Brugia malayi]
Length = 354
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 111/365 (30%), Positives = 153/365 (41%), Gaps = 91/365 (24%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M V KT+ FEIE+ P + +VK I +G YP Q LI+ GKVL D T+E
Sbjct: 23 MLVTFKTIAQVSFEIELDPHLTIGEVKAKIAEEKGEVEYPTECQKLIYNGKVLDDAQTVE 82
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E + + FVVVM+ + K P A
Sbjct: 83 EVMIDPSKFVVVMIARKK--------------------------------------PIGA 104
Query: 121 PPQSVPE--SAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQ 178
P +S P+ + PA AP P+ + D+ + E T Q
Sbjct: 105 PVESTPQPSNLQIPAGAQVTTAPVSVADSGPSTPQNPDDLTPEQ----------EETAQA 154
Query: 179 ILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQ 238
I+ MG + R+ VIRALRA++ N +RAVEYL SGIPE+ + GG Q
Sbjct: 155 IVAMG---YPRDKVIRALRASFFNGDRAVEYLCSGIPEEEDL--------GGH------Q 197
Query: 239 TQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQ 298
A+ G A LDFLR QF+ LR +VQ+NP
Sbjct: 198 ESAEHEE-----------------------GERAQGLGLDFLRQLPQFEQLRELVQSNPA 234
Query: 299 ILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQ-AVTVTPE 357
IL ++Q++ + NP LM IQ +Q +F+ L+N G + A Q A+ VT
Sbjct: 235 ILPQIIQQIAQSNPALMEAIQNNQEEFVNLLNNGSVSSGGGGVAPSAGEQRQVAIHVTEA 294
Query: 358 EREAI 362
ER+AI
Sbjct: 295 ERDAI 299
>gi|240273069|gb|EER36592.1| pre-mRNA-splicing factor cwc24 [Ajellomyces capsulatus H143]
Length = 826
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 128/379 (33%), Positives = 176/379 (46%), Gaps = 63/379 (16%)
Query: 8 LKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAEN 67
LK F IE +P + V VK+ I +G DV +QQ LI+ GK+L+D T+E + E
Sbjct: 448 LKQQKFVIEAEPSETVGQVKEKISQEKGWDV---AQQKLIYSGKILQDANTIESYNIEEK 504
Query: 68 SFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQSVPE 127
F+V M++K K AP+ A +S AP T ++ A + P +
Sbjct: 505 GFIVCMVSKPK----------PAPSTSAGVSSQAPSTPAPAAASTPAAAAHRSNPLTSDI 554
Query: 128 SAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSW 187
+A P A A P S L+ G E V Q+ MG +
Sbjct: 555 TATPSPAAPVVAPVAGGSTTFNDP------------SALLMGPQGEQVVAQMESMG---F 599
Query: 188 DRETVIRALRAAYNNPERAVEYLYSGIPE---------------------QTAVPPVARA 226
R + RA+RAAY NP+RA+EYL +GIPE TA PP A
Sbjct: 600 PRSDIDRAMRAAYFNPDRAIEYLLNGIPETTQAEHREAAPAPPATTTPSGSTAAPPTT-A 658
Query: 227 SAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGL--PNMGSNAGAGTLDFLRNSQ 284
+ G + AQ A AP G QGL P G N G LDFLR++
Sbjct: 659 AVGDDEHINLFEAAAQ---AGAPQLGGAGRGARAAGQGLAPPAEGGNLG--NLDFLRSNP 713
Query: 285 QFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQL 344
FQ LR +VQ PQ+L+P+LQ++G NP L +LI ++Q FL+L++E ++ QL
Sbjct: 714 HFQQLRQLVQQQPQMLEPILQQVGAGNPQLAQLIGQNQDQFLQLLSEDIDDD-----AQL 768
Query: 345 ASAMPQAVTVTPEEREAIE 363
Q +TVT EER+AIE
Sbjct: 769 PPGAHQ-ITVTEEERDAIE 786
>gi|226291157|gb|EEH46585.1| hypothetical protein PADG_02683 [Paracoccidioides brasiliensis
Pb18]
Length = 379
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 127/387 (32%), Positives = 177/387 (45%), Gaps = 72/387 (18%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ + LK F IE +P + + +K+ I +G DV + Q LI+ GK+L+D T+E
Sbjct: 1 MKLTFRDLKQQKFVIEAEPSETIGQLKERISQERGWDV---ALQKLIYSGKILQDENTIE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPA-PTV 119
+ E F+V M+TK P T+T T+SQ P+ PT
Sbjct: 58 SYNIEEKGFIVCMVTK-------------------------PKTTTPAATSSQAPSTPTP 92
Query: 120 APPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQI 179
A + AP PA ++ S L+ G E + Q+
Sbjct: 93 AVASTPAAPAPASNPQPTDAPATTTPAAPAPAPAAAGGATFNDPSALLMGPQGEQVIAQM 152
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 239
MG + R + RA+RAA+ NP+RA+EYL +GIPE S Q PA T
Sbjct: 153 ESMG---FPRSDIDRAMRAAFFNPDRAIEYLLNGIPE---------TSQAEQREAAPATT 200
Query: 240 QAQQPAAPAPTSGPNANPLDLFP---------------------QGLPNM--GSNAGAGT 276
PAAPA T G ++LF QGL G G
Sbjct: 201 APSGPAAPAATGGDEH--VNLFEAAAQAGAPQGGGAGRGARATGQGLAAAAEGQQGSLGN 258
Query: 277 LDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG 336
LDFLRN+ FQ LR +VQ PQ+L+P+LQ++G NP L +LI ++Q FL+L++E +E
Sbjct: 259 LDFLRNNPHFQQLRQLVQQQPQMLEPILQQVGAGNPQLAQLIGQNQDQFLQLLSEDIEDD 318
Query: 337 EGNVLGQLASAMPQAVTVTPEEREAIE 363
QL Q +TVT EER+AIE
Sbjct: 319 -----AQLPPGTHQ-ITVTEEERDAIE 339
>gi|291407417|ref|XP_002719904.1| PREDICTED: UV excision repair protein RAD23 homolog B-like
[Oryctolagus cuniculus]
Length = 488
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 105/340 (30%), Positives = 166/340 (48%), Gaps = 57/340 (16%)
Query: 13 FEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVV 72
F I++ P V +K+ IE QG D +P + Q L++ G+VL D L + ++ E+ V V
Sbjct: 13 FHIDIDPGQTVRALKEKIEAEQGRDAFPVAGQQLLYAGRVLPDDAVLRDCQIHEHHAVTV 72
Query: 73 MLTKSKVSSSGASTVSAAPANQAQTTS----------------SAPPTSTQPTTTSQTPA 116
++ + + +++ A + A A Q+ + +AP TST+ TPA
Sbjct: 73 LVARPEAATTAAPATATATAGQSHPATAASAGAGAPARGPALPAAPATSTRA-----TPA 127
Query: 117 P-TVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEAT 175
P + SVP ++ A P P P+P P A A SS + QAA L+ E
Sbjct: 128 PASSTCAMSVPATS-TRATPRLPPCPSPTPDDAIAGPSSRAQPSEQAARALLTRPASEQM 186
Query: 176 VQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAV-----PPVARASAGG 230
V +I+ MG ++RE V+ ALRA++NNP RAVEYL G+P A PP A +S G
Sbjct: 187 VAEIVSMG---YEREQVLAALRASFNNPHRAVEYLLMGLPGDRASAAEVEPPQAGSSGAG 243
Query: 231 QAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALR 290
++ + +A + AA TSG +PLD+ LRN +F+ LR
Sbjct: 244 RS----SAVEADEGAA---TSGSGGHPLDV-------------------LRNLPEFEELR 277
Query: 291 TMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLIN 330
++Q P +L +LQ L Q+P L ++++Q + ++
Sbjct: 278 RIIQHFPSLLPGVLQRLCPQDPQLEDQLRQYQEYLVHMLT 317
>gi|392569695|gb|EIW62868.1| UV excision repair protein Rad23 [Trametes versicolor FP-101664
SS1]
Length = 388
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 86/216 (39%), Positives = 126/216 (58%), Gaps = 30/216 (13%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTL+ F+IE + D V+D+K+ I+ QG V Q LI+ GKVL D ++E
Sbjct: 1 MKITVKTLQQKVFQIEAEGTDTVADLKQKIQETQGHGV---DSQKLIYSGKVLPDSKSIE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
++ E F+V+M++K K +++ +A ++ S+APP + P S PAP
Sbjct: 58 SCEIKEKDFLVLMVSKPKPTAA-----TAGASSSTPAASTAPPAAAAPAAESSIPAPV-- 110
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVS-SVSDVYGQAASNLVAGSNLEATVQQI 179
AP AAP P AP PA A APV+ S+ D + + G L+ TVQ +
Sbjct: 111 --------APSTAAPQPPNAPILTPAQA-APVAPSLGDGF-------LTGEALQGTVQNM 154
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 215
++MG ++RE V+RALRA++NNPERAVEYL++GIP
Sbjct: 155 IEMG---FEREQVMRALRASFNNPERAVEYLFNGIP 187
>gi|350634058|gb|EHA22422.1| hypothetical protein ASPNIDRAFT_204514 [Aspergillus niger ATCC
1015]
Length = 369
Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 123/377 (32%), Positives = 185/377 (49%), Gaps = 62/377 (16%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ K LK F I+ +P + V VK+ I +G +V Q LI+ GK+L+D T+E
Sbjct: 1 MKLTFKDLKQQKFVIDAEPSETVGQVKEKISKEKGWEV---PQLKLIYSGKILQDDKTIE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ E F+V M++K K +SSG T+S AP TP+ V
Sbjct: 58 SYNIEEKGFIVCMVSKPKATSSG-------------TSSQAP----------STPSRAVT 94
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
+ P + P AA P+ P+PA A S S L++G+ EA V Q+
Sbjct: 95 STPAAPPAPAPSAASTTPAVPS-TPSPAAAGTSQAQGSAFNDPSALLSGTQSEAVVAQME 153
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
MG + R V RA+RAA+ NP+RA+EYL +GIPE +A+A + ++
Sbjct: 154 AMG---FARSDVNRAMRAAFFNPDRAIEYLLNGIPENIQQEQQQQAAAASAPQSAAPES- 209
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAG-----------TLDFLRNSQQFQAL 289
AP++G + P++LF G G +L+FLRN+ FQ L
Sbjct: 210 -------APSAGDD-EPVNLFEAAAQAGGQEGGGRGARAAGGAELPSLEFLRNNPHFQQL 261
Query: 290 RTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMP 349
R +VQ PQ+L+P+LQ++ NP + +LI +++ FL+L++E + E A+P
Sbjct: 262 RQLVQQQPQMLEPILQQVAAGNPQIAQLIGQNEEQFLQLLSEEPDDDE---------ALP 312
Query: 350 QAVT---VTPEEREAIE 363
T VT EER+AIE
Sbjct: 313 PGTTQIHVTEEERDAIE 329
>gi|83764932|dbj|BAE55076.1| unnamed protein product [Aspergillus oryzae RIB40]
Length = 403
Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 127/395 (32%), Positives = 181/395 (45%), Gaps = 89/395 (22%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
V VK LK F I+ +P + V VK+ I +G +V Q LI+ GK+L+D +E
Sbjct: 26 FNVAVKDLKQQKFVIDAEPSETVGQVKEKISKEKGWEV---PQLKLIYSGKILQDDKAIE 82
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ E F+V M++K K SSS A T S AP+ ++ +S P P ++ A
Sbjct: 83 SYNIEEKGFIVCMVSKPKASSSTA-TPSQAPSTPSRAATSTPAAPPAPAPSTNASATAPP 141
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
S + P SD S L++GS EA + +
Sbjct: 142 ATPSPAAATQP------------------------SDAAFNDPSALLSGSQGEAVISHME 177
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAV-------------------- 220
MG + R+ + RA+RAA+ NP RA+EYL +GIPE
Sbjct: 178 SMG---FPRDDINRAMRAAFFNPTRAIEYLLNGIPENIQQEQEQQQQQQQAATATAASPQ 234
Query: 221 PPVARASAGGQAGNPPAQTQAQQP------AAPAPT-SGPNANPLDLFPQGLPNMGSNAG 273
PP A A GN PA T ++P AA A T GP+ GS AG
Sbjct: 235 PPAASA-----GGNAPATTGGEEPVNLFEAAAQAGTQEGPHG----------ARSGSAAG 279
Query: 274 AG--TLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINE 331
G LDFLRN+ FQ LR +VQ PQ+L+P+LQ++ NP + +LI +++ FL+L++E
Sbjct: 280 EGLPNLDFLRNNPHFQQLRQLVQQQPQMLEPILQQVAAGNPQIAQLIGQNEEQFLQLLSE 339
Query: 332 PVEGGEGNVLGQLASAMP---QAVTVTPEEREAIE 363
+G A+P + VT EER+AIE
Sbjct: 340 EGDG-----------ALPPGTHQIHVTEEERDAIE 363
>gi|76156833|gb|AAX27952.2| SJCHGC06167 protein [Schistosoma japonicum]
Length = 231
Score = 117 bits (293), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 78/214 (36%), Positives = 115/214 (53%), Gaps = 28/214 (13%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV KTLK F ++++ +D V DVKK IE +GS+ + AS Q LIH GKV++D +L+
Sbjct: 1 MKVTFKTLKQQTFVLDLQEDDLVGDVKKKIEAERGSE-FDASTQKLIHSGKVMEDSKSLK 59
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ KV ++ FVVVM + SK + G+++ PA + +PTT + P V
Sbjct: 60 DYKVTDSGFVVVM-SVSKPAKEGSASAPGNPAGEG-----------RPTTDKKIPDVDVT 107
Query: 121 -PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQI 179
P S P++ P+ P + G S+LV G N E VQ++
Sbjct: 108 ESPSSKPDANSQPSLPTVTTTQSTTTN-----------TLGFGESSLVTGENFERVVQEL 156
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 213
+ MG +++ VIRA+RA +NNP+RA EYL SG
Sbjct: 157 VSMG---FEKPLVIRAMRAGFNNPDRAFEYLSSG 187
>gi|121712652|ref|XP_001273937.1| UV excision repair protein (RadW), putative [Aspergillus clavatus
NRRL 1]
gi|119402090|gb|EAW12511.1| UV excision repair protein (RadW), putative [Aspergillus clavatus
NRRL 1]
Length = 383
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 126/385 (32%), Positives = 191/385 (49%), Gaps = 64/385 (16%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ K LK F I+ +P + V VK+ I +G +V SQ LI+ GK+L+D T+E
Sbjct: 1 MKLTFKDLKQQKFVIDAEPSETVGQVKEKISKEKGWEV---SQLKLIYSGKILQDDKTIE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ E F+V M++K K +S+ A T S AP T ++ ++ P A
Sbjct: 58 TYNIEEKGFIVCMVSKPKATSAAA------------TPSQAPSTPSRAVASTPAAPPAPA 105
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P + A P APA A P V S L++G+ EA V Q+
Sbjct: 106 PSAATSTPAVPATPSPAAPAQPSADTP----------VAFNDPSALLSGAQSEAVVAQME 155
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE----QTAVPPVARASAGGQAGNPP 236
MG + R + RA+RAA+ NP+RA+EYL +GIPE + + + G A +PP
Sbjct: 156 SMG---FPRSDINRAMRAAFFNPDRAIEYLLNGIPETIHQEQQQQQQQQQAGAGAAASPP 212
Query: 237 AQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAG---------------TLDFLR 281
A + + P+ T G P++LF + G+ GAG L+FLR
Sbjct: 213 APSAPSGESVPSSTGGDE--PVNLF-EAAAQAGTGEGAGRGARAGVEGAGEALPNLEFLR 269
Query: 282 NSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVL 341
N+ FQ LR +VQ PQ+L+P+LQ++ NP + +LI +++ FL+L++E +G
Sbjct: 270 NNPHFQQLRQLVQQQPQMLEPILQQVAAGNPQIAQLIGQNEEQFLQLLSEEDDG------ 323
Query: 342 GQLASAMP---QAVTVTPEEREAIE 363
A+P A++VT EER+AIE
Sbjct: 324 -----ALPPGTHAISVTEEERDAIE 343
>gi|217071960|gb|ACJ84340.1| unknown [Medicago truncatula]
Length = 110
Score = 117 bits (292), Expect = 1e-23, Method: Composition-based stats.
Identities = 57/90 (63%), Positives = 69/90 (76%), Gaps = 1/90 (1%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI V P D + VKKNIE +QG D YP QQ+LIH GKVLKD TTL
Sbjct: 1 MKLTVKTLKGSHFEIRVHPSDSIMAVKKNIEDIQGKDNYPCGQQLLIHNGKVLKDETTLA 60
Query: 61 ENKVAENSFVVVMLTKSKV-SSSGASTVSA 89
+NKV+E+ F+VVML+KSKV S+G S+ A
Sbjct: 61 DNKVSEDGFLVVMLSKSKVLGSAGTSSTQA 90
>gi|301118881|ref|XP_002907168.1| UV excision repair protein RAD23 [Phytophthora infestans T30-4]
gi|262105680|gb|EEY63732.1| UV excision repair protein RAD23 [Phytophthora infestans T30-4]
Length = 449
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 71/169 (42%), Positives = 99/169 (58%), Gaps = 38/169 (22%)
Query: 165 NLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVA 224
N+V+ + ATVQQ++DMG + + V ALRAA+NNPERAVEYL +GIPEQ A P
Sbjct: 145 NVVSDEQMSATVQQLVDMG---FPEDQVRSALRAAFNNPERAVEYLMTGIPEQAAAP--- 198
Query: 225 RASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQ 284
AQT P+SG +A GS+ A +L+ LRN
Sbjct: 199 ------------AQT-------AVPSSGASA-------------GSDDVANSLEALRNHP 226
Query: 285 QFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPV 333
QF ALR +VQ+NP L +LQ++G Q+P L+RLI ++Q F++++NEP+
Sbjct: 227 QFDALRQLVQSNPAALPAVLQQIGAQSPELLRLIHQNQDRFVQMLNEPI 275
>gi|47718026|gb|AAH70960.1| Rad23b protein [Rattus norvegicus]
Length = 252
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 79/230 (34%), Positives = 117/230 (50%), Gaps = 42/230 (18%)
Query: 153 SSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYS 212
SS S+++ A S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL
Sbjct: 8 SSRSNLFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLM 64
Query: 213 GIP----EQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNM 268
GIP Q V P PP P +PA +
Sbjct: 65 GIPGDRESQAVVDP------------PPQAVSTGTPQSPAVAAAAATTT--------ATT 104
Query: 269 GSNAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRL 328
+ +G L+FLRN QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F+++
Sbjct: 105 TTTSGGHPLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQM 164
Query: 329 INEPVEGG---------------EGNVLGQLASAMPQAVTVTPEEREAIE 363
+NEPV+ G + + S + VTP+E+EAIE
Sbjct: 165 LNEPVQEAGGQGGGGGGGGGGGGGGGGIAEAGSGHMNYIQVTPQEKEAIE 214
>gi|324513075|gb|ADY45389.1| UV excision repair protein RAD23 A [Ascaris suum]
Length = 348
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 102/332 (30%), Positives = 146/332 (43%), Gaps = 75/332 (22%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ KT+ F +EV P + ++K I +G YP Q LI+ GK+L D T+E
Sbjct: 1 MKITFKTISQVTFHVEVDPSITIGELKAKIAEQEGQLEYPVDGQKLIYNGKILDDAQTVE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E K+ F+VVM+ + K A+ + PA A +A ST+ T
Sbjct: 61 ELKIDAAKFIVVMVARKKAPPPAANAPESTPATPAVEEGAASVPSTEAVT---------- 110
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
+AP A + A A P E TVQ I+
Sbjct: 111 -------AAPTGTAQPAPQQASAAAPDALTP-------------------EQEETVQAIV 144
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
MG + R+ VIRALRAA+ N +RAVEYL + IP++ + GQ A+
Sbjct: 145 AMG---YPRDRVIRALRAAFFNGDRAVEYLCTEIPDEEEL--------AGQHDEGEAEES 193
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQIL 300
A + +A QG L+FLR QF+ LR +VQ+NP IL
Sbjct: 194 AGEESA----------------QG------------LEFLRQLPQFEQLRELVQSNPAIL 225
Query: 301 QPMLQELGKQNPHLMRLIQEHQTDFLRLINEP 332
++Q++ + NP LMR IQ +Q F+ L+N P
Sbjct: 226 PQIIQQIAQSNPALMRAIQSNQEQFVNLLNAP 257
>gi|47496878|dbj|BAD19842.1| RAD23 protein-like [Oryza sativa Japonica Group]
Length = 110
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 63/97 (64%), Positives = 72/97 (74%), Gaps = 12/97 (12%)
Query: 156 SDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 215
+D+YG AASNLVAGSNLE TVQ IL+MGGG+WDR+TV+RAL AAYNNPERAVEYLY+G+P
Sbjct: 26 ADIYGLAASNLVAGSNLEGTVQSILEMGGGAWDRDTVMRALGAAYNNPERAVEYLYTGLP 85
Query: 216 EQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSG 252
Q A ASA QA + PA QA PTSG
Sbjct: 86 GQ------AEASAVVQALSVPAAVQA------FPTSG 110
>gi|312095801|ref|XP_003148472.1| UV excision repair protein Rad23 containing protein [Loa loa]
Length = 341
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 107/341 (31%), Positives = 150/341 (43%), Gaps = 92/341 (26%)
Query: 1 MKVFVKTLKGTHFEIEVKPED-----------KVSDVKKNIETVQGSDVYPASQQMLIHQ 49
M + KT+ FEIE+ P K+ +VK I +G YP Q LI+
Sbjct: 1 MLITFKTIAQVSFEIELDPHLTVYFWSNVVLPKIGEVKAKIAEEKGEVEYPIECQKLIYN 60
Query: 50 GKVLKDVTTLEENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPT 109
GKVL D T+EE + + FVV+M+ + K V A PA S+ P++ Q
Sbjct: 61 GKVLDDAQTVEEVMIDPSKFVVIMIARKK-------PVGATPAE-----STPQPSNLQIP 108
Query: 110 TTSQTPAPTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAG 169
+Q T P SV +++P AAP S +SD G
Sbjct: 109 AAAQV---TTVTPASVTDNSP--AAPQN---------------SGISD--GLTPEQ---- 142
Query: 170 SNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAG 229
E T Q I+ MG + R+ VIRALRA++ N +RAVEYL SGIPE+ + G
Sbjct: 143 ---EETAQAIVAMG---YSRDKVIRALRASFFNGDRAVEYLCSGIPEEEDL--------G 188
Query: 230 GQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQAL 289
G Q A+ G LDFLR QF+ L
Sbjct: 189 GH------QESAEHEE-----------------------GERGQGLGLDFLRQLPQFEQL 219
Query: 290 RTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLIN 330
R +VQ+NP +L ++Q++ + NP LM IQ +Q +F+ L+N
Sbjct: 220 RELVQSNPALLPQIIQQIAQSNPALMEAIQNNQEEFVNLLN 260
>gi|297721185|ref|NP_001172955.1| Os02g0465112 [Oryza sativa Japonica Group]
gi|255670888|dbj|BAH91684.1| Os02g0465112, partial [Oryza sativa Japonica Group]
Length = 92
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 64/100 (64%), Positives = 74/100 (74%), Gaps = 12/100 (12%)
Query: 153 SSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYS 212
S+ +D+YG AASNLVAGSNLE TVQ IL+MGGG+WDR+TV+RAL AAYNNPERAVEYLY+
Sbjct: 5 STEADIYGLAASNLVAGSNLEGTVQSILEMGGGAWDRDTVMRALGAAYNNPERAVEYLYT 64
Query: 213 GIPEQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSG 252
G+P Q A ASA QA + PA QA PTSG
Sbjct: 65 GLPGQ------AEASAVVQALSVPAAVQA------FPTSG 92
>gi|198436382|ref|XP_002131525.1| PREDICTED: similar to RAD23a homolog [Ciona intestinalis]
Length = 335
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 97/329 (29%), Positives = 148/329 (44%), Gaps = 64/329 (19%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + +KTLK F+IE+ E+ V +K+ I +G+D +P + Q LI+ GK+L D +L+
Sbjct: 1 MLITIKTLKQNIFKIEIDEEEPVKVLKEKIAKEKGNDNFPVAGQKLIYAGKILDDSKSLK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E K+ + F+V M+TK K S + +A T++ QPT P VA
Sbjct: 61 EYKIEDGKFIVAMVTKPK--SVSPPAPTPPEPTEAAVTTTTSTQEEQPTN-----QPAVA 113
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
+ + +PA A + +P VS QA S LV G V I+
Sbjct: 114 ------------STTSSSPAEEQASSASPLNVS-------QAESTLVTGEAYNELVTSIM 154
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
MG ++RE V+ AL A++ NP+RAVEYL SG + G A PP Q
Sbjct: 155 AMG---FERERVVAALNASFCNPDRAVEYLMSG------------TTNVGTA--PPQQQP 197
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQIL 300
P AP S N + L ++ + Q + +Q NP +L
Sbjct: 198 DTIPTENAPISDSN---------------------VFNDLMDNPEIQVMAQQIQQNPHLL 236
Query: 301 QPMLQELGKQNPHLMRLIQEHQTDFLRLI 329
QP LQ++ + NP L ++ H +F+ +
Sbjct: 237 QPYLQQIEQSNPSLFNMVSSHPEEFVSFL 265
>gi|222622818|gb|EEE56950.1| hypothetical protein OsJ_06656 [Oryza sativa Japonica Group]
Length = 242
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 63/97 (64%), Positives = 72/97 (74%), Gaps = 12/97 (12%)
Query: 156 SDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 215
+D+YG AASNLVAGSNLE TVQ IL+MGGG+WDR+TV+RAL AAYNNPERAVEYLY+G+P
Sbjct: 158 ADIYGLAASNLVAGSNLEGTVQSILEMGGGAWDRDTVMRALGAAYNNPERAVEYLYTGLP 217
Query: 216 EQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSG 252
Q A ASA QA + PA QA PTSG
Sbjct: 218 GQ------AEASAVVQALSVPAAVQA------FPTSG 242
>gi|325091544|gb|EGC44854.1| pre-mRNA-splicing factor Cwc24 [Ajellomyces capsulatus H88]
Length = 826
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 125/379 (32%), Positives = 178/379 (46%), Gaps = 63/379 (16%)
Query: 8 LKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAEN 67
LK F IE +P + V VK+ I +G DV +QQ LI+ GK+L+D T+E + E
Sbjct: 448 LKQQKFVIEAEPSETVGQVKEKISQEKGWDV---AQQKLIYSGKILQDANTIESYNIEEK 504
Query: 68 SFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQSVPE 127
F+V M++K K + S ++ VS+ + +++ P + + T T P + P
Sbjct: 505 GFIVCMVSKPKPAPSTSAGVSSQAPSTPAPAAASTPAAAAHRSNPLTSDITATPSPAAPV 564
Query: 128 SAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSW 187
+AP P S L+ G E V Q+ MG +
Sbjct: 565 AAPVAGGSTTFNDP----------------------SALLMGPQGEQVVAQMESMG---F 599
Query: 188 DRETVIRALRAAYNNPERAVEYLYSGIPE---------------------QTAVPPVARA 226
R + RA+RAAY NP+RA+EYL +GIPE TA PP A
Sbjct: 600 PRSDIDRAMRAAYFNPDRAIEYLLNGIPETTQAEHREAAPATPATTTPSGSTAAPPTT-A 658
Query: 227 SAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGL--PNMGSNAGAGTLDFLRNSQ 284
+ G + AQ A AP G QGL P G N G LDFLR++
Sbjct: 659 AVGDDEHINLFEAAAQ---AGAPQLGGAGRGARAAGQGLAPPAEGGNLG--NLDFLRSNP 713
Query: 285 QFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQL 344
FQ LR +VQ PQ+L+P+LQ++G NP L +LI ++Q FL+L++E ++ QL
Sbjct: 714 HFQQLRQLVQQQPQMLEPILQQVGAGNPQLAQLIGQNQDQFLQLLSEDIDDD-----AQL 768
Query: 345 ASAMPQAVTVTPEEREAIE 363
Q +TVT EER+AIE
Sbjct: 769 PPGAHQ-ITVTEEERDAIE 786
>gi|417410194|gb|JAA51574.1| Putative nucleotide excision repair factor nef2 rad23 component,
partial [Desmodus rotundus]
Length = 377
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 79/221 (35%), Positives = 115/221 (52%), Gaps = 37/221 (16%)
Query: 156 SDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 215
S+++ A S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP
Sbjct: 143 SNLFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIP 199
Query: 216 ----EQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSN 271
Q V P A+ G + A +SG G P
Sbjct: 200 GDRESQAVVDPPPAATTGAPQSSVAAAAATTTATTTTTSSG-----------GHP----- 243
Query: 272 AGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINE 331
L+FLRN QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F++++NE
Sbjct: 244 -----LEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNE 298
Query: 332 PV---------EGGEGNVLGQLASAMPQAVTVTPEEREAIE 363
PV GG + + S + VTP+E+EAIE
Sbjct: 299 PVQEAGGQGGGSGGGSGGIAEAGSGHMNYIQVTPQEKEAIE 339
>gi|50550853|ref|XP_502899.1| YALI0D16401p [Yarrowia lipolytica]
gi|49648767|emb|CAG81090.1| YALI0D16401p [Yarrowia lipolytica CLIB122]
Length = 359
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 112/371 (30%), Positives = 172/371 (46%), Gaps = 59/371 (15%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVK-KNIETVQGSDVYPASQQMLIHQGKVLKDVTTL 59
M V ++ K + ++V+P D V +K KN E G D Y Q +I+ GK+L + T++
Sbjct: 1 MLVKLRDTKRQQWTVDVEPSDTVETLKTKNAE---GKD-YGVGDQKMIYSGKILANTTSI 56
Query: 60 EENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTV 119
E + E++F++ M++K KV ++ A+ +AAP A + P T+ P
Sbjct: 57 ESLNLKEDAFIICMISKPKVKAAAAAPAAAAPVAAAPAAAEPAVAPVTPATSRSVATP-- 114
Query: 120 APPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQI 179
AP + P A A S+ D+ ++ A + + + +
Sbjct: 115 --------GAPTNSGNVVGNTETPTTGGADA--STTGDIGAESGPAASATAAVTTAINNM 164
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 239
+DMG + R+ V A+RAAYNNPERAVEYL +GIP+
Sbjct: 165 VDMG---YPRDQVEAAMRAAYNNPERAVEYLLTGIPDHVI-------------------- 201
Query: 240 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAG----TLDFLRNSQQFQALRTMVQA 295
++ P S + DLF + + G A LDFLR++ QF +R MVQ
Sbjct: 202 -GEEADDDVPESNTDT---DLFAEAVAQQGQGASVAPNTSALDFLRDNPQFIEMRRMVQQ 257
Query: 296 NPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVT-- 353
P +L+P++Q+L NP L LI ++ FL L+ E +E G G V P+ T
Sbjct: 258 QPHLLEPLIQQLAASNPQLAALITQNSEAFLHLLGEGLEEGSGGV--------PEGTTEI 309
Query: 354 -VTPEEREAIE 363
VTPEE +AIE
Sbjct: 310 QVTPEESDAIE 320
>gi|211909006|gb|ACJ12793.1| RAD23-like protein B [Sebastiscus marmoratus]
Length = 277
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 69/182 (37%), Positives = 108/182 (59%), Gaps = 25/182 (13%)
Query: 153 SSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYS 212
S+ +++ +A SNLV G++ +A V +++ MG ++RE V+ ALRA++NNP+RAVEYL +
Sbjct: 76 STNTNLIDEAVSNLVTGASYDAMVNEMMLMG---YEREQVVAALRASFNNPDRAVEYLLT 132
Query: 213 GIPEQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLP-NMGSN 271
GIP G+ P A A P P SG ++ P+ LP N GS+
Sbjct: 133 GIP--------------GRDPGPAAGLDAVVP----PVSGVHSAPIGGI--SLPANTGSS 172
Query: 272 -AGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLIN 330
+G L FLR+ QF +R ++Q N +L +LQE+G++NP L++ I HQ F++++N
Sbjct: 173 PSGGNPLSFLRSQPQFHVMRQLIQQNAALLPALLQEIGRENPELLQEISSHQEQFIQMLN 232
Query: 331 EP 332
EP
Sbjct: 233 EP 234
>gi|238503490|ref|XP_002382978.1| UV excision repair protein (RadW), putative [Aspergillus flavus
NRRL3357]
gi|220690449|gb|EED46798.1| UV excision repair protein (RadW), putative [Aspergillus flavus
NRRL3357]
Length = 439
Score = 114 bits (286), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 122/379 (32%), Positives = 179/379 (47%), Gaps = 71/379 (18%)
Query: 8 LKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAEN 67
LK F I+ +P + V VK+ I +G +V Q LI+ GK+L+D +E + E
Sbjct: 69 LKQQKFVIDAEPSETVGQVKEKISKEKGWEV---PQLKLIYSGKILQDDKAIESYNIEEK 125
Query: 68 SFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQSVPE 127
F+V M++K K SSS A T S AP+ ++ +S P P ++ A S
Sbjct: 126 GFIVCMVSKPKASSSTA-TPSQAPSTPSRAATSTPAAPPAPAPSTNASATAPPATPSPAA 184
Query: 128 SAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSW 187
+ P SD S L++GS EA + + MG +
Sbjct: 185 ATQP------------------------SDAAFNDPSALLSGSQGEAVISHMESMG---F 217
Query: 188 DRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQQPAAP 247
R+ + RA+RAA+ NP RA+EYL +GIPE + + Q A A P P
Sbjct: 218 PRDDINRAMRAAFFNPTRAIEYLLNGIPEN-----IQQEQEQQQQQQQAATATAASPQPP 272
Query: 248 APTSGPNA-------NPLDLF-----------PQGLPNMGSNAGAG--TLDFLRNSQQFQ 287
A ++G NA P++LF P G GS AG G LDFLRN+ FQ
Sbjct: 273 AASAGGNAPATTGGEEPVNLFEAAAQAGTQEGPHG-ARSGSAAGEGLPNLDFLRNNPHFQ 331
Query: 288 ALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASA 347
LR +VQ PQ+L+P+LQ++ NP + +LI +++ FL+L++E +G A
Sbjct: 332 QLRQLVQQQPQMLEPILQQVAAGNPQIAQLIGQNEEQFLQLLSEEGDG-----------A 380
Query: 348 MP---QAVTVTPEEREAIE 363
+P + VT EER+AIE
Sbjct: 381 LPPGTHQIHVTEEERDAIE 399
>gi|449017046|dbj|BAM80448.1| nucleotide excision repair protein yeast rad23/ human HHR23A
homolog [Cyanidioschyzon merolae strain 10D]
Length = 430
Score = 114 bits (285), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 107/364 (29%), Positives = 167/364 (45%), Gaps = 41/364 (11%)
Query: 1 MKVFVKTLKGTHFEIE-VKPEDKVSDVKKNIETVQGSDVYPASQQ--MLIHQGKVLKDVT 57
M++ KTL + ++ + P+ V ++K+ + + PA Q LI G+VL D T
Sbjct: 1 MRLTFKTLDNKNLSLDGISPDTTVEELKRELGGREEFRWDPARTQEARLIFAGRVLSDPT 60
Query: 58 -TLEENKVAENSFVVVM--LTKSKVSSSGASTVSAAPAN-----QAQTTSSAPPTSTQPT 109
L + + ++ F+VVM ++ S AS VS+A A QA S A ++T +
Sbjct: 61 QKLADCGMQDDDFLVVMPPRVATQRSRKTAS-VSSADAQLKTPLQAGLASEATDSATIAS 119
Query: 110 TTSQTPAPTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAG 169
S+ P +PP SV +A + PA + A + P + G A+S L G
Sbjct: 120 EASRG-IPADSPPASV-------SAKSSGATPAESGALSQTPQVEGTTTSGIASSGLAVG 171
Query: 170 SNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTA--VPPVARAS 227
+ ++ DMG +D ++ RA+RAA+ NPERA+EYL +G P T P+ +
Sbjct: 172 DEYSLYMNRMRDMG---FDDGSIERAMRAAHYNPERAIEYLCNGFPANTESLTEPLNDEA 228
Query: 228 AGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQ 287
+ PAQ Q + PA P LD +R F
Sbjct: 229 RRPEHQTLPAQAGMDQTSRPAEAVHPELQQ---------------SRSELDIIRRLPHFA 273
Query: 288 ALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGE-GNVLGQLAS 346
LR +Q +P +Q +L EL + NP L+ +IQ +Q DF+ ++NEPV E G + QL
Sbjct: 274 LLRRAIQQDPSQIQSLLAELRRMNPRLLDIIQRNQADFINMLNEPVTDEEAGREMRQLRE 333
Query: 347 AMPQ 350
+ Q
Sbjct: 334 LVAQ 337
>gi|432871920|ref|XP_004072043.1| PREDICTED: UV excision repair protein RAD23 homolog B-like [Oryzias
latipes]
Length = 421
Score = 114 bits (284), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 86/226 (38%), Positives = 129/226 (57%), Gaps = 16/226 (7%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++ +KTL+ +IE+ PE V +K+ IE +G D +P S Q LI+ GK+L+D T ++
Sbjct: 1 MQITLKTLQQQTIQIEIDPEQTVKALKEKIEAERGKDNFPVSGQKLIYAGKILQDDTPIK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ K+ E +FVVVM++K+K +++ ++ AP AQ + S TST ++ APT A
Sbjct: 61 DYKIDEKNFVVVMVSKAKPAATTSAPAPEAPKPPAQDSGS---TSTAAPPSNPPAAPTPA 117
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
PE A + A A P SS + A+S LV G+ EA + +I+
Sbjct: 118 AVPIPPEEAKQEQS-------AEATEPQQPASSSGGNQGLDASSALVTGAEYEAMLTEIM 170
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE---QTAVPPV 223
MG ++RE V+ ALRA++NNP RAVEYL +GIP Q + PPV
Sbjct: 171 SMG---YERERVVAALRASFNNPHRAVEYLLTGIPSSPVQESNPPV 213
Score = 44.3 bits (103), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 31/47 (65%)
Query: 271 NAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRL 317
++G L FLR QF +R +Q NP +L +LQ+LG++NP L+++
Sbjct: 351 SSGENPLAFLRTQPQFLHMRQAIQQNPALLPTLLQQLGRENPQLLQV 397
>gi|70998612|ref|XP_754028.1| UV excision repair protein (RadW) [Aspergillus fumigatus Af293]
gi|66851664|gb|EAL91990.1| UV excision repair protein (RadW), putative [Aspergillus fumigatus
Af293]
gi|159126238|gb|EDP51354.1| UV excision repair protein (RadW), putative [Aspergillus fumigatus
A1163]
Length = 376
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 124/385 (32%), Positives = 186/385 (48%), Gaps = 71/385 (18%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ K LK F IE +P + V VK+ I +G +V Q LI+ GK+L+D T+E
Sbjct: 1 MKLTFKDLKQQKFVIEAEPSETVGQVKEKISKEKGWEV---PQLKLIYSGKILQDDKTIE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ E F+V M++K K AP ++ P+ TP+ A
Sbjct: 58 TYNIEEKGFIVCMVSKPK----------------------APSSAATPSQAPSTPSRAAA 95
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
+ P + P AAP+ PA APAP + + S L++GS EA + Q+
Sbjct: 96 STPAAPSAPAPSAAPSAPAVPATPSPAAPAPAPTDASAAFNDPSALLSGSQSEAVISQME 155
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
MG + R + RA+RAA+ NP+RA+EYL +GIP+ +A+A A P A +
Sbjct: 156 SMG---FPRSDINRAMRAAFFNPDRAIEYLLNGIPDNIQQEQQQQAAAAAAAPRPSAPS- 211
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAG-------------------TLDFLR 281
AP+S P++LF + AG G LDFLR
Sbjct: 212 ----GESAPSSTGGDEPVNLF-----EAAAQAGTGEGTGRGARAGAVGAGEGLPNLDFLR 262
Query: 282 NSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVL 341
N+ FQ LR +VQ PQ+L+P+LQ++ NP + +LI +++ FL+L++E +G
Sbjct: 263 NNPHFQQLRQLVQQQPQMLEPILQQVAAGNPQIAQLIGQNEEQFLQLLSEEDDG------ 316
Query: 342 GQLASAMP---QAVTVTPEEREAIE 363
A+P A++VT EER+AIE
Sbjct: 317 -----ALPPGTHAISVTEEERDAIE 336
>gi|345327426|ref|XP_001507990.2| PREDICTED: UV excision repair protein RAD23 homolog B-like
[Ornithorhynchus anatinus]
Length = 292
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 75/207 (36%), Positives = 108/207 (52%), Gaps = 22/207 (10%)
Query: 23 VSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSSS 82
V +K+ IET +G D +P + Q LI+ GK+L D T L+E K+ E +FVVVM+TK K +++
Sbjct: 42 VKALKEKIETEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPKATAT 101
Query: 83 GASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPAPA 142
+ + TTS+ + T + TP+P +AP P P P PA
Sbjct: 102 PMPSPVVGQQSNPATTSTVSSSKASAVTPAPTPSPVLAPVTPTPAGEPAPTVAPKEEKPA 161
Query: 143 PAPAPAPAPVS-------------------SVSDVYGQAASNLVAGSNLEATVQQILDMG 183
P AP +S S S+++ A S LV G + E V +I+ MG
Sbjct: 162 EKPVEAPVALSPSSSDSLTGDASGDASGDASRSNLFEDATSALVTGQSYENMVTEIMSMG 221
Query: 184 GGSWDRETVIRALRAAYNNPERAVEYL 210
++RE VI ALRA++NNP+RAVEYL
Sbjct: 222 ---YEREQVIAALRASFNNPDRAVEYL 245
>gi|389611285|dbj|BAM19254.1| UV excision repair protein rad23 [Papilio polytes]
Length = 326
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 113/374 (30%), Positives = 162/374 (43%), Gaps = 96/374 (25%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M V +KTL+ F+IE+ PE+ V +K IE +G D Y A Q LI+ GK+L D +
Sbjct: 1 MLVTLKTLQQLSFQIEIDPEETVKALKLKIEVEKGKD-YAADYQRLIYAGKILLDDNKIS 59
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ E F+V+M+TK K S + AS+ S A + S+ S +T +TP P
Sbjct: 60 TYNIDEKKFIVIMVTKPKPSETQASSTSTPEAGEC-AASTVVGDSKDKSTAEETPQP--- 115
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P + PE PAAP + A + E+TVQ I+
Sbjct: 116 PTAAEPERTAEPAAPV-----------------------------ISAELDFESTVQSIM 146
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
DMG ++R+ V +ALRA+++N ERAVEYL +GIPE+ A + P
Sbjct: 147 DMG---YNRQQVEQALRASFSNRERAVEYLITGIPEELL----QEQEAEESSEEDPLSFL 199
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQIL 300
QP + NP L N L+ + Q NP +L
Sbjct: 200 RDQPQFQQMRAVIQQNP------SLLNT-------------------VLQQIGQTNPALL 234
Query: 301 QPMLQELGKQNPHLMRLIQEHQTDFLRLINEPV----------EGGEGNVLGQLASAMPQ 350
Q I +HQ F+R++NEPV + G N + Q PQ
Sbjct: 235 QA---------------ISQHQQAFVRMLNEPVNPPATGAVIQDSGVDNPIPQ----QPQ 275
Query: 351 AVT-VTPEEREAIE 363
+V V+P++REAIE
Sbjct: 276 SVVQVSPQDREAIE 289
>gi|320583701|gb|EFW97914.1| Rad23p [Ogataea parapolymorpha DL-1]
Length = 350
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 110/364 (30%), Positives = 166/364 (45%), Gaps = 74/364 (20%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V K K +EV+ D V K+ + +++ + ASQ ++ GKVL+D T E
Sbjct: 1 MQVIFKDFKKEKIPLEVELSDSVLSAKEKLASLKECE---ASQVKFVYSGKVLQDDKTFE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
K+ EN V+ M++K K +++ + A
Sbjct: 58 NFKIKENDQVIFMISKPKKAAAAPEPAAKEQA---------------------------- 89
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
+PA A AP PA PA S + AS +GS E +Q I+
Sbjct: 90 -------------SPAGAAAPVAEPAQ-PAQEGSSATPAAFDASTFASGSVRETAIQNIM 135
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
MG ++R V +AL AA+NNP+RAVEYL SGIP++TA PP A Q+G P QT+
Sbjct: 136 AMG---FERPQVEQALTAAFNNPDRAVEYLLSGIPQRTAEPP-----AAAQSGEP--QTE 185
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTL-DFLRNSQQFQALRTMVQANPQI 299
QPAA + PN + L + G +A DF+ +LR ++Q P++
Sbjct: 186 -DQPAAEDTNASPNPDNLFEAAAAAGSQGQDADQQQEGDFMG------SLREILQQQPEM 238
Query: 300 LQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEER 359
+ +LQ+L NP L ++Q + F+R I + G+ N A+ QA+ V PE
Sbjct: 239 AEAVLQQLAASNPQLAEIVQSNPEAFMRYITD----GDQN-------ALAQALGVPPEYM 287
Query: 360 EAIE 363
E +E
Sbjct: 288 EGVE 291
>gi|258571718|ref|XP_002544662.1| UV excision repair protein Rad23 [Uncinocarpus reesii 1704]
gi|237904932|gb|EEP79333.1| UV excision repair protein Rad23 [Uncinocarpus reesii 1704]
Length = 371
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 134/434 (30%), Positives = 191/434 (44%), Gaps = 142/434 (32%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQG---------- 50
MK+ + LK F I+ +P + + +K+ I +G D A+QQ LI+ G
Sbjct: 1 MKLSFRDLKQQKFTIDAEPSETIGQLKEKIAQEKGWD---AAQQKLIYSGELHFERHLRL 57
Query: 51 ---------------KVLKDVTTLEENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQA 95
K+L++ T+E + E FVV M++K K
Sbjct: 58 ARDLNLLSDVRPSTGKILQNANTIESYNIEEKGFVVCMVSKPK----------------- 100
Query: 96 QTTSSAPPTSTQPTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSV 155
TQP + TPA P Q PPA PAPA PA APAP ++
Sbjct: 101 ----------TQPAPS--TPA---GPSQ-------PPATPAPAQTSTPAAPSAPAPATND 138
Query: 156 SDVY--------GQAA-----SNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNN 202
G AA S L+ GS EA VQ++ MG + R + RA+RAA+ +
Sbjct: 139 PSAPPATPSPAGGDAAAFNNPSTLLMGSQSEAAVQEMEAMG---FPRADIDRAMRAAFFH 195
Query: 203 PERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQQPAAPA-------PTSGPNA 255
P+RA+EYL +GIP+ T P AR +QP+APA P++ P A
Sbjct: 196 PDRAIEYLLNGIPD-TPEQPAAR----------------EQPSAPAQSNVPVPPSNQPAA 238
Query: 256 N-----PLDLFPQGLPNMGSNAGAGT------------------LDFLRNSQQFQALRTM 292
N P++LF GT LDFLRN+ FQ LR +
Sbjct: 239 NAEPDEPINLFEAAAQAAQGGGARGTRTAGASLGGAAGGEGLSNLDFLRNNPHFQQLRQL 298
Query: 293 VQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMP--- 349
VQ P +L+P+LQ+LG NP L +LI ++Q FL+L++E +E + +P
Sbjct: 299 VQQQPGMLEPILQQLGAGNPQLAQLIGQNQEQFLQLLSEDIEDD---------TQLPPGT 349
Query: 350 QAVTVTPEEREAIE 363
++VT EER+AIE
Sbjct: 350 HTISVTEEERDAIE 363
>gi|261197590|ref|XP_002625197.1| UV excision repair protein Rad23 [Ajellomyces dermatitidis
SLH14081]
gi|239595160|gb|EEQ77741.1| UV excision repair protein Rad23 [Ajellomyces dermatitidis
SLH14081]
gi|327354300|gb|EGE83157.1| nucleotide excision repair protein RAD23 [Ajellomyces dermatitidis
ATCC 18188]
Length = 386
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 127/390 (32%), Positives = 185/390 (47%), Gaps = 71/390 (18%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ + LK F IE +P + V VK+ I +G DV +QQ LI+ GK+L+D T+E
Sbjct: 1 MKLTFRDLKQQKFVIEAEPSETVGQVKEKISQEKGWDV---AQQKLIYSGKILQDANTIE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAA----PANQAQTTSSAPPTSTQPTTTSQTPA 116
+ E F+V M++K K + S ++ S+ PA A +T +AP + PTT+
Sbjct: 58 SYNIEEKGFIVCMVSKPKPAPSTSAAASSQAPSTPAPVAASTPTAPAPRSNPTTSDAPAT 117
Query: 117 PTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATV 176
P+ A P + P P S L+ G E +
Sbjct: 118 PSPAAPAAAPAVGGAATFNDP--------------------------SALLMGPQGEQVI 151
Query: 177 QQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPP 236
Q+ MG + R + RA+RAA+ NP+RA+EYL +GI P ++A A PP
Sbjct: 152 AQMESMG---FPRSDIDRAMRAAFFNPDRAIEYLLNGI------PETSQAEQREAAPAPP 202
Query: 237 AQTQAQQPAAPAPTSGPNANPLDLFPQ----GLPNMGS-------------------NAG 273
A T AAPA + ++LF G P G+
Sbjct: 203 ATTAPTGGAAPAAAATEGDEHVNLFEAAAQAGTPQAGATGRGARAAGQGLAAAAEGQGGS 262
Query: 274 AGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPV 333
G LDFLRN+ FQ LR +VQ PQ+L+P+LQ++G NP L +LI ++Q FL+L++E +
Sbjct: 263 LGNLDFLRNNPHFQQLRQLVQQQPQMLEPILQQVGAGNPQLAQLIGQNQDQFLQLLSEDI 322
Query: 334 EGGEGNVLGQLASAMPQAVTVTPEEREAIE 363
+ QL Q +TVT EER+AIE
Sbjct: 323 DDD-----AQLPPGTHQ-ITVTEEERDAIE 346
>gi|259487698|tpe|CBF86570.1| TPA: UV excision repair protein (RadW), putative (AFU_orthologue;
AFUA_5G06040) [Aspergillus nidulans FGSC A4]
Length = 369
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 127/379 (33%), Positives = 190/379 (50%), Gaps = 66/379 (17%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ + LK F I+ +P + V VK+ I T +G DV P+ + LI+ GK+L+D T+E
Sbjct: 1 MKLTFRDLKQQKFVIDAEPSETVGQVKEKISTEKGWDV-PSLK--LIYSGKILQDDKTVE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTS-QTPAPTV 119
+ E F+V M++K K TQP++ S TPA +V
Sbjct: 58 FYNIEEKGFIVCMVSKPK---------------------------TQPSSQSPSTPAKSV 90
Query: 120 APPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASN----LVAGSNLEAT 175
+ P + P + P PA P+P SS + + N L+ GS E
Sbjct: 91 TSTPAPPPAPAPSTNTSTTATSGPVPA-TPSPASSGAAQSSASTFNDPSALLTGSQSEEV 149
Query: 176 VQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNP 235
+ Q++ MG ++RE + RA+RAA+ NP+RA+EYL +GIPE R++A A
Sbjct: 150 INQMMSMG---FEREQINRAMRAAFFNPDRAIEYLLNGIPENIQQEQQQRSAATTPA--- 203
Query: 236 PAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAG--------TLDFLRNSQQFQ 287
A A AP TSG + P++LF GAG +LDFLRN FQ
Sbjct: 204 -APQAAAASGAPPATSGED-EPVNLFEAAAQAGEGRGGAGGASGGEPQSLDFLRNHPAFQ 261
Query: 288 ALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASA 347
LR +VQ PQ+L+P+LQ++G+ NP + +LI +++ FL+L++E + +A
Sbjct: 262 QLRQLVQQQPQMLEPILQQVGQGNPQIAQLIGQNEEAFLQLLSEEDD-----------AA 310
Query: 348 MPQAVT---VTPEEREAIE 363
+P T VT EER+AIE
Sbjct: 311 LPPGTTQIHVTEEERDAIE 329
>gi|358373285|dbj|GAA89884.1| UV excision repair protein [Aspergillus kawachii IFO 4308]
Length = 369
Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 120/377 (31%), Positives = 182/377 (48%), Gaps = 62/377 (16%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ K LK F I+ +P + V VK+ I +G +V Q LI+ GK+L+D T+E
Sbjct: 1 MKLTFKDLKQQKFVIDAEPSETVGQVKEKISKEKGWEV---PQLKLIYSGKILQDDKTIE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ E F+V M++K K +SSG T+S AP TP+ V
Sbjct: 58 SYNIEEKGFIVCMVSKPKATSSG-------------TSSQAP----------STPSRAVT 94
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
+ P + P AA P+ A + + S L++G+ EA V Q+
Sbjct: 95 STPAAPPAPAPSAASTTPAVPSTPSPAAAGAAQAQGSAFND-PSALLSGTQSEAVVAQME 153
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
MG + R V RA+RAA+ NP+RA+EYL +GIPE +A+A ++
Sbjct: 154 AMG---FARSDVNRAMRAAFFNPDRAIEYLLNGIPENIQQEQQQQAAAASAPQTAAPES- 209
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAG-----------TLDFLRNSQQFQAL 289
AP++G + P++LF G GA +L+FLRN+ FQ L
Sbjct: 210 -------APSAGDD-EPVNLFEAAAQAGGQEGGARGARAAGGAELPSLEFLRNNPHFQQL 261
Query: 290 RTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMP 349
R +VQ PQ+L+P+LQ++ NP + +LI +++ FL+L++E + E A+P
Sbjct: 262 RQLVQQQPQMLEPILQQVAAGNPQIAQLIGQNEEQFLQLLSEEPDDDE---------ALP 312
Query: 350 QAVT---VTPEEREAIE 363
T VT EER+AIE
Sbjct: 313 PGTTQIHVTEEERDAIE 329
>gi|358387006|gb|EHK24601.1| hypothetical protein TRIVIDRAFT_84601 [Trichoderma virens Gv29-8]
Length = 361
Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 125/378 (33%), Positives = 170/378 (44%), Gaps = 74/378 (19%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV + LK F ++V+P DK+S VK+ I +G D P SQ+ LI+ GK+LKD T++
Sbjct: 1 MKVTFRDLKQQKFVLDVEPTDKISAVKEKISAEKGWD--PKSQK-LIYSGKILKDDDTVQ 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSS--APPTSTQPTTTSQTPAPT 118
+ E FVV M+ K K +++ A+ S+ PP Q +T
Sbjct: 58 SYNIEEKGFVVCMVNKPKPAAAPAAAAPPPATPAPPVASTPVVPPAPVQTST-------- 109
Query: 119 VAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQ 178
A PPA P P + A P S L GS +
Sbjct: 110 ---------QAAPPATPTPNRS-AGTP------------------SGLAMGSERAEAIAN 141
Query: 179 ILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQ 238
+ MG ++R + A+RAA+NNP+RAVEYL +GIPE Q NPP
Sbjct: 142 MEAMG---FERTQIEAAMRAAFNNPDRAVEYLLTGIPESVQ------QEQQQQRANPPQA 192
Query: 239 TQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNA----------GAGTLDFLRNSQQFQA 288
A G N DL Q S G LDFLR++ QFQ
Sbjct: 193 ASTAAAPAADDDGG--VNLFDLAAQRRGAPASGGAPAAAAAAQNDLGNLDFLRHNAQFQQ 250
Query: 289 LRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAM 348
LR +VQ PQ+L+P+LQ+LG NP L +LI + FL+L+ E E +
Sbjct: 251 LRQVVQQQPQMLEPILQQLGAGNPQLAQLIASNPDQFLQLLGEDAEDD---------VPL 301
Query: 349 P---QAVTVTPEEREAIE 363
P QA++VT EER+AIE
Sbjct: 302 PPGAQAISVTEEERDAIE 319
>gi|156096789|ref|XP_001614428.1| DNA repair protein RAD23 [Plasmodium vivax Sal-1]
gi|148803302|gb|EDL44701.1| DNA repair protein RAD23, putative [Plasmodium vivax]
Length = 406
Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 99/353 (28%), Positives = 150/353 (42%), Gaps = 65/353 (18%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKD----V 56
MKV V+TL+ EI V ED + DVKK IE P +Q LI G +LKD V
Sbjct: 1 MKVKVRTLQNNEEEISVDNEDTILDVKKKIEVAFPE--MPCDKQKLIFSGNILKDESKAV 58
Query: 57 TTLEENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPA 116
L+EN + V+VM K SS T + ++SSA ++ T
Sbjct: 59 DVLKENDI-----VIVMACKKIFSSKNNQT-------KESSSSSANVLKSKEKT------ 100
Query: 117 PTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATV 176
P PA AP A S A S LV G L+ T+
Sbjct: 101 ------------------PLPANDDQKNAAPTAAEEGGQSKNLNNAESALVTGEKLKETI 142
Query: 177 QQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVA---RASAGGQAG 233
I MG ++RE V +A+ A+NNP RA++YL +G P++ V ++ + + G
Sbjct: 143 DNICAMG---FEREAVRKAMMVAFNNPNRAIDYLTNGFPDENEVNEISAINTMNGMNEMG 199
Query: 234 NPPAQTQAQQPAAPAPTSGPNANPLDLFPQ-------GLPNMGSNAGA----------GT 276
A + T+ N + + + LPN+ +N A +
Sbjct: 200 AANAANAMRDVNETNETNETNETNDNSYEREDNESAPNLPNLLNNYSALADNPRQSVPDS 259
Query: 277 LDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLI 329
D R+S F LR + +NPQ + +L+ +G+ +P + I+E+Q +F+R I
Sbjct: 260 TDQFRSSPFFNILRDVALSNPQRIPEILEMIGRTDPSFLEFIRENQGEFIRAI 312
>gi|50412599|ref|XP_457143.1| DEHA2B04180p [Debaryomyces hansenii CBS767]
gi|49652808|emb|CAG85137.1| DEHA2B04180p [Debaryomyces hansenii CBS767]
Length = 373
Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 98/339 (28%), Positives = 143/339 (42%), Gaps = 58/339 (17%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++ K K IEV D V K+ + + + +V SQ ++ GKVL+D TLE
Sbjct: 1 MQIIFKDFKKQKIPIEVDLSDTVLATKEKLASEKDCEV---SQLKFVYSGKVLQDEKTLE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
K+ E ++ M++K+K +S + PA + TS+ +T+ T S TPA
Sbjct: 58 SFKIKEGDSIIFMISKAKKASP-----APGPAKAEEKTSTDASATTESTNASSTPAA--- 109
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
A+ A P A A G + EAT+Q I+
Sbjct: 110 ------------ASGASTNQQGSEPGSAFAQ-----------------GDDREATIQNIM 140
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE--QTAVPPVARASAGGQAGNPPAQ 238
+MG ++R + ALRAA+NNP RAVEYL +GIPE Q A G N
Sbjct: 141 EMG---YERPQIEEALRAAFNNPHRAVEYLLTGIPESLQRHADQSTSAPIGESTTNTTND 197
Query: 239 TQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGT----------LDFLRNSQQFQA 288
+ + G N LF G T D L Q +
Sbjct: 198 HEEEHEHDHEGEEGQGEN---LFEAAAAAAAQGEGGNTTSGAGGAEAGADDLGEDNQMRL 254
Query: 289 LRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLR 327
LRT +Q NP+++QP+L++L NP + LIQ+ F+R
Sbjct: 255 LRTALQTNPELIQPLLEQLAASNPQVAALIQQDPEGFIR 293
>gi|221055233|ref|XP_002258755.1| dna repair protein rad23 [Plasmodium knowlesi strain H]
gi|193808825|emb|CAQ39527.1| dna repair protein rad23, putative [Plasmodium knowlesi strain H]
Length = 403
Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 103/387 (26%), Positives = 161/387 (41%), Gaps = 79/387 (20%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ V+TL+ EI V +D + DVKK I P +Q LI G +LKD +
Sbjct: 1 MKIKVRTLQNNEEEINVDNDDTILDVKKKIGVAFPE--MPYDKQKLIFSGNILKDESKAM 58
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ + EN V+VM K SS T+ T ++ + V
Sbjct: 59 D-ILKENDIVIVMACKKIFSS------------------------TKNNQTKESSSKDVI 93
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
S PP A + AP ++S A S LV G L+ T+ I
Sbjct: 94 KSNEKASSLPPNCDQNNATSNAPEEGTENRSLNS-------AESALVTGEKLKETIDNIC 146
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQT---------------------A 219
MG ++RETV +A+ A+NNP RA++YL +G PE++ A
Sbjct: 147 AMG---FERETVKKAMMMAFNNPNRAIDYLTNGFPEESQVNEINAINTITGMNEMNPLNA 203
Query: 220 VPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGS---NAG--- 273
+P V + + + ++ AP+ P L N S N+G
Sbjct: 204 MPDVNETNETNETNETNDNSYEREDNENAPS----------LPNLLNNYNSLADNSGQSV 253
Query: 274 AGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLI---- 329
A T D R+S F LR + +NPQ + +L+ +G+ +P + I+E+Q +F+R I
Sbjct: 254 ADTPDQFRSSPFFNILRDVALSNPQRIPEILEMIGRTDPSFLEFIRENQGEFIRAIQNYG 313
Query: 330 -NEPVEGGEGNVLGQLASAMPQAVTVT 355
N+ V E +++ A P + +T
Sbjct: 314 NNDHVGSSENDLMEGEEFADPGNLNIT 340
>gi|449546744|gb|EMD37713.1| hypothetical protein CERSUDRAFT_83454 [Ceriporiopsis subvermispora
B]
Length = 363
Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 113/367 (30%), Positives = 177/367 (48%), Gaps = 46/367 (12%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTL+ F I+ + D V+D+K+ I QG + Q +I+ GK+L D T+E
Sbjct: 1 MKLTVKTLQQKVFHIDAEGSDTVADIKQKISESQG---HAVESQKIIYSGKILPDTKTIE 57
Query: 61 ENKVAENSFVVVMLTKSK-VSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTV 119
++ E F+V+M++K K ++ AS+ ++ +P + + T V
Sbjct: 58 SCEIKEKDFLVLMVSKPKPTAAPAASSSTSTTTATPAPAVPSPAPTAPSPAPAATTPAAV 117
Query: 120 APPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQI 179
PP +AP A P AP PA A S V G A L+ ++Q +
Sbjct: 118 QPP-----NAPLLAPAPATPVAAPQPAQERALGDLSSFVTGDA---------LQQSIQNM 163
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 239
++MG ++R+ V+RALRA++NNP+RAVEYL++GIP + A N
Sbjct: 164 IEMG---FERDQVMRALRASFNNPDRAVEYLFNGIPAHLEATAAGTPAP---APNLFQLA 217
Query: 240 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQI 299
Q QQ +G G P M G L L+N+ QFQ LR ++ NP +
Sbjct: 218 QQQQQQQQQQATG-----------GFPGM---PGGVDLAALQNNPQFQQLRQVIAQNPAL 263
Query: 300 LQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMP---QAVTVTP 356
+QP++Q+L NP +L+ ++ L + GEG+ G A+P + +TP
Sbjct: 264 VQPLIQQLAGANPQFAQLLAQNPEALLTALGL----GEGDFEGD-EGALPPGTHVINITP 318
Query: 357 EEREAIE 363
EE+EAI+
Sbjct: 319 EEQEAIQ 325
>gi|317107865|dbj|BAJ53744.1| nucleotide excision repair protein [Marsupenaeus japonicus]
Length = 382
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 95/332 (28%), Positives = 154/332 (46%), Gaps = 46/332 (13%)
Query: 5 VKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKV 64
+K L+ F +E++ V +K+ +E +G D YPA Q LI+ GK+ +D TTLE +
Sbjct: 6 LKNLQQQTFTVEIELSATVKALKEKVEKEKGGD-YPAVGQKLIYAGKIPQDDTTLESYNI 64
Query: 65 AENSFVVVMLTKSKVSSSGA-----STVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTV 119
+ F+V+M+TK K + V + ++ +S +T S A
Sbjct: 65 DDKKFLVIMVTKPKAPPPPVGPSDPTIVETEETPAEEPAATTESSSQSTSTPSTESAAAA 124
Query: 120 APPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQI 179
+ + + + A PA AP SV G A S LV G V+ I
Sbjct: 125 GTNTTTTTTTTSSSQSSAASNTQSTPATQAAPGGSV----GSAESLLVMGEEFNRMVENI 180
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 239
++MG ++R V RALRA++NNP AV+YL GIP P + +A PAQ
Sbjct: 181 MEMG---YERSQVERALRASFNNPYTAVQYLVDGIP-----PNLEEPAA------QPAQG 226
Query: 240 QAQQPAAPAPTSG---PNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQAN 296
G P+ +PL+ FLR+ QF+ +R M+++N
Sbjct: 227 GDGGGEEQVVAEGEADPDEDPLN-------------------FLRSQPQFEQMRQMIRSN 267
Query: 297 PQILQPMLQELGKQNPHLMRLIQEHQTDFLRL 328
P +L ++++G+ NP L+++IQ++Q F+R+
Sbjct: 268 PSLLDAFIRQIGQTNPQLLQVIQQNQEAFVRM 299
>gi|395333137|gb|EJF65515.1| UV excision repair protein Rad23 [Dichomitus squalens LYAD-421 SS1]
Length = 396
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 82/216 (37%), Positives = 119/216 (55%), Gaps = 22/216 (10%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTL+ F+I+ + D V D+K+ I+ QG + Q LI+ GKVL D T+E
Sbjct: 1 MKITVKTLQQKVFQIDAEGSDTVGDLKRKIQETQG---HALESQKLIYSGKVLPDSKTVE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTV-SAAPANQAQTTSSAPPTSTQPTTTSQTPAPTV 119
++ E F+V+M++K K + S A V S AP A ++AP Q T+++ AP
Sbjct: 58 SCEIKEKDFLVLMVSKPKPAPSNAPPVTSGAPVAAAPPAAAAPAPVPQATSSATALAPAP 117
Query: 120 APPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQI 179
A PQ PA AP AP PA + + G L++TV +
Sbjct: 118 AAPQPPNAPILTPAQAAPIEGAAPVPA---------------GDGSFLTGEALQSTVNNM 162
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 215
++MG ++RE V+RALRA++NNPERAVEYL++GIP
Sbjct: 163 IEMG---FEREQVMRALRASFNNPERAVEYLFNGIP 195
>gi|327292408|ref|XP_003230903.1| UV excision repair protein Rad2 [Trichophyton rubrum CBS 118892]
gi|326466939|gb|EGD92392.1| UV excision repair protein Rad2 [Trichophyton rubrum CBS 118892]
Length = 365
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 112/363 (30%), Positives = 174/363 (47%), Gaps = 74/363 (20%)
Query: 26 VKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSSSGAS 85
VK+ I T +G +PASQQ LI+ GK+L+D T+E + E F+V M++K K + S ++
Sbjct: 11 VKEKIATEKG---WPASQQKLIYSGKILQDDNTVESYNIEEKGFIVCMVSKPKAAPSASA 67
Query: 86 TVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPAPAPAP 145
S+ A + + S APT A SAP PA P+P
Sbjct: 68 ASSSQTPAAAPSAPAPITPS----------APTRA-------SAPASETPA-----TPSP 105
Query: 146 APAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPER 205
A + ++ +D S L+ G+ + + Q+L MG + R + RA+RAAY NP+R
Sbjct: 106 AGGASSGATFND-----PSALLMGNQGQEAITQMLAMG---FSRGDIDRAMRAAYFNPDR 157
Query: 206 AVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGL 265
A+EYL +GIPE++ + +A + P+ L+LF Q
Sbjct: 158 AIEYLLNGIPEESEREAPSAPAA-------AGGAARPSTTSEEPSDAQVQESLNLFEQAA 210
Query: 266 PNMGSNA----------------------GAGTLDFLRNSQQFQALRTMVQANPQILQPM 303
G+L+FLRN+ FQ LR +VQ PQ+L+P+
Sbjct: 211 AQASGGGGARGRGAGAGAGAGAGAGETAGSLGSLEFLRNNPHFQQLRQLVQQQPQMLEPI 270
Query: 304 LQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMP---QAVTVTPEERE 360
LQ++G NP L +LI ++Q FL+L++E V+ + +P Q+++VT EER+
Sbjct: 271 LQQVGAGNPQLAQLIGQNQEQFLQLLSEDVDD---------ETQLPPGAQSISVTEEERD 321
Query: 361 AIE 363
AIE
Sbjct: 322 AIE 324
>gi|156051332|ref|XP_001591627.1| hypothetical protein SS1G_07073 [Sclerotinia sclerotiorum 1980]
gi|154704851|gb|EDO04590.1| hypothetical protein SS1G_07073 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 370
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 122/379 (32%), Positives = 181/379 (47%), Gaps = 63/379 (16%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ K LK F IE +P + +S+VK I +G + ASQQ LI+ GK+L+D T+E
Sbjct: 1 MKLTFKDLKQAKFVIEAEPTELISEVKDKISKEKG---WEASQQKLIYSGKILQDANTVE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ E F+V M++K K + + +S+ + AP+ A T++ P P +S T V
Sbjct: 58 SYHIEEKGFIVCMVSKPKAAPAASSSATKAPSTPAPATAATPAPPAAPAHSSSTTNTAV- 116
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
PA P+PA A P+ P+ + L G+ A QI
Sbjct: 117 -----------PATPSPAGASVPSVQATPS----------NETTGLAMGAERSA---QIA 152
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
+M ++R + A+RAA+ N ERA+EYL +GIPE + + P A
Sbjct: 153 EMEAMGFERSQIDLAMRAAFFNSERAIEYLLTGIPEN-----LLQEQRQAAPAAPAAGQA 207
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLD-------------FLRNSQQFQ 287
+ QPAA G P+DLF A + FLRN+ QFQ
Sbjct: 208 SSQPAA-----GGEDEPVDLFAAAANAGNRGGAARADNAAAPGGGGLGNLDFLRNNAQFQ 262
Query: 288 ALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASA 347
LR +VQ PQ+L+P+LQ++G NP L LI +H FL+L++E + +
Sbjct: 263 QLRQVVQQQPQMLEPILQQVGAGNPQLATLISQHPEQFLQLLSENADDD---------AP 313
Query: 348 MP---QAVTVTPEEREAIE 363
+P QA+ V+ EER+AIE
Sbjct: 314 LPPGAQAIEVSGEERDAIE 332
>gi|358056787|dbj|GAA97450.1| hypothetical protein E5Q_04129 [Mixia osmundae IAM 14324]
Length = 434
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 113/383 (29%), Positives = 182/383 (47%), Gaps = 36/383 (9%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
++V +K L+ F +E++P + D+K+ IE+ QG + + Q +I GKVL D T+
Sbjct: 31 VRVTLKNLQQKTFTLELEPSQTILDLKQKIESDQG---HAVALQKIIFSGKVLADDKTIG 87
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ + E F +V++ +S+ + + A+ ++SAP + P T + A
Sbjct: 88 DCNIKEKDF-MVLMVNKPKASAAPAVANLPAASAPAASASAPAPTATPATATPASAAAPE 146
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P + ++ P A A A A + AP +S + + G+ LEA++ +++
Sbjct: 147 PTAAASTASAPATPAATASADATTASAETAPAAS------DDPTAFLTGARLEASIAEMV 200
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPP---VARASAGGQAGNPPA 237
MG + RE RA+RA+YNNP RAVEYL +GIP + P V A+ G
Sbjct: 201 SMG---FPREDCQRAMRASYNNPHRAVEYLMNGIPAEAQTAPPRAVPAATTGATPAAATT 257
Query: 238 QTQAQQPAAPAPTSGPNANPLDLFPQG----------------LPNMGSNAGAGTLDFLR 281
T+ A + P++LF + AG LD LR
Sbjct: 258 TTETAATPAAPVPAPTTGQPMNLFDAARQAAQNPAPAAATGGAARPGATEAG---LDALR 314
Query: 282 NSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEG-GEGNV 340
F+ LRT+VQ NP +LQP LQ+L + NP L+ +IQ++Q FL+ + E EG G+
Sbjct: 315 REPAFEQLRTLVQQNPALLQPFLQQLAQTNPRLLGIIQQNQEAFLQFLGEGAEGEGDFGF 374
Query: 341 LGQLASAMPQAVTVTPEEREAIE 363
G Q V V+ +E +AI+
Sbjct: 375 EGDDGQEGMQHVQVSADEAQAID 397
>gi|448122735|ref|XP_004204517.1| Piso0_000368 [Millerozyma farinosa CBS 7064]
gi|448125012|ref|XP_004205075.1| Piso0_000368 [Millerozyma farinosa CBS 7064]
gi|358249708|emb|CCE72774.1| Piso0_000368 [Millerozyma farinosa CBS 7064]
gi|358350056|emb|CCE73335.1| Piso0_000368 [Millerozyma farinosa CBS 7064]
Length = 366
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 96/335 (28%), Positives = 145/335 (43%), Gaps = 59/335 (17%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V K K I+V+ D V K+ + + + ASQ ++ GKVL D TLE
Sbjct: 1 MQVIFKDFKKQKVPIDVELTDTVLSTKEKLAAEKDCE---ASQLKFVYSGKVLPDDKTLE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
K+ E ++ M++K+K SA P+S QP +
Sbjct: 58 SLKIKEGDAIIFMISKTK--------------------KSATPSSEQPQASK-------- 89
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P + + + +P PA A + A A + ++ Q G E ++ I+
Sbjct: 90 PEKESSKESEDKGSPTPA---AEEESGAGASGAQAGSIFAQ-------GDERENNIRNIM 139
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP-PVARASAGGQAGNPPAQT 239
+MG ++R V ALRAA+NNP RAVEYL +GIPE P P AS+GG P +
Sbjct: 140 EMG---YERPQVEAALRAAFNNPHRAVEYLLTGIPESLQAPQPNYSASSGG--AQPAVEA 194
Query: 240 QAQQPAAPAPTSGPNANPLDLFPQGLPNM-------GSNAGAGTLDFLRNSQQFQALRTM 292
++ G N LF +A G D L Q + LR
Sbjct: 195 ESTHNEDEENEHGEN-----LFEAAAAAAAQEGGAGDQDAAEGAGDDLNEENQMRLLRAA 249
Query: 293 VQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLR 327
+Q NP+++QP+L++L NP + LIQ+ F+R
Sbjct: 250 LQTNPELIQPLLEQLAASNPQVAALIQQDPEGFIR 284
>gi|47206809|emb|CAG13273.1| unnamed protein product [Tetraodon nigroviridis]
Length = 366
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 107/317 (33%), Positives = 159/317 (50%), Gaps = 43/317 (13%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + +KTL+ F+IE+ E+ V +K+ IE +G D +P S LI+ GK+L D L+
Sbjct: 1 MLITLKTLQQQTFKIEIDEEETVKRLKEKIEEEKGKDHFPVSGLKLIYAGKILSDDKPLK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E K+++ +FVVVM TK K +++ +A ++APP +
Sbjct: 61 EYKISDKNFVVVMATKPKTAAAAPQPSAAG--------TTAPPALDPGPDPCRRHRLRPP 112
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
PP PE+ P P P + SS +++ +A SNLV G + E+ V +I+
Sbjct: 113 PPPPRPENRCSIVFIDLTAPPPPLPPSRGSEGSSGTNLIDEAVSNLVTGPSYESMVNEIM 172
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
MG ++RE V+ ALRA++NNP+RAVEYL TA P A A+ A PA T
Sbjct: 173 LMG---YEREQVVAALRASFNNPDRAVEYLL------TAAGPAAEATPASSAPAAPAGT- 222
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQIL 300
+PA G NP L FLRN QFQ +R ++Q N +L
Sbjct: 223 ----GSPAGAEG--VNP-------------------LSFLRNQPQFQQMRQLIQQNAALL 257
Query: 301 QPMLQELGKQNPHLMRL 317
+LQE+G++NP L+R+
Sbjct: 258 PTLLQEIGRENPELLRV 274
>gi|322698416|gb|EFY90186.1| UV excision repair protein (RadW), putative [Metarhizium acridum
CQMa 102]
Length = 400
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 120/378 (31%), Positives = 170/378 (44%), Gaps = 35/378 (9%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV + LK F +EV+P +S VK+ I +G D Q LI+ GK+LKD T+
Sbjct: 1 MKVTFRDLKQQKFVLEVEPTYLISAVKEKISAEKGWD---PKHQKLIYSGKILKDDETVA 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ E FVV M+ K+ + SS NQ + P T + A
Sbjct: 58 SYNIEEKGFVVCMVNKACLFSSQLRRCF----NQTGRLTYLQPKEKPAPTAESSAAAAPP 113
Query: 121 PPQSVPESAPP--PAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQ 178
+ P ++ P PAAPA + A P P S + G+ S L G+ +
Sbjct: 114 ATPAQPVASTPAVPAAPAQSSTTQSAAPATPTPQRS-GEAGGETGSGLAMGAERAEAITN 172
Query: 179 ILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGG-------- 230
+ MG ++R + A+RAA+NNP+RAVEYL +GIPE AR +A
Sbjct: 173 MEAMG---FERSQIEAAMRAAFNNPDRAVEYLLNGIPENIQQEQHARQAAAAGPTQAAPA 229
Query: 231 --QAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQA 288
+ G AA A + + A LDFLR++ QFQ
Sbjct: 230 AQEGGEDDGGVNLFDLAAQAGGGRGGSGSGNAAAAAATATQGGADLSNLDFLRHNPQFQQ 289
Query: 289 LRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAM 348
LR +VQ PQ+L+P+LQ+LG NP L +LI + FL L+ E + +
Sbjct: 290 LRQVVQQQPQMLEPILQQLGAGNPQLAQLIAANPDQFLSLLGESADDD---------VPL 340
Query: 349 P---QAVTVTPEEREAIE 363
P QA++VT EER+AIE
Sbjct: 341 PPGAQAISVTEEERDAIE 358
>gi|313224970|emb|CBY20762.1| unnamed protein product [Oikopleura dioica]
Length = 352
Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 105/338 (31%), Positives = 154/338 (45%), Gaps = 68/338 (20%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSD---VYPASQQMLIHQGKVLKDVT 57
M++ VKTL+ F++E +P V D K IE SD VY A Q LI+QGK+L+D
Sbjct: 1 MQLTVKTLQQKAFKVEAEPSILVKDFKALIEEAGKSDHGGVYKAEAQKLIYQGKILEDEK 60
Query: 58 TLEENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAP 117
+EE ++ E F+V+M+TK KV + + +T S TPA
Sbjct: 61 KIEEYQITEKGFIVLMVTKPKVVPKPVEPKP---------EPTPAAPAAAASTESSTPAE 111
Query: 118 TVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQ 177
+ + + + P A A AP +NL+A E+ V+
Sbjct: 112 STSSTDATTTPSQPVATEAAAPV-------------------NPHVANLMAMGFPESQVK 152
Query: 178 QILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPA 237
Q AL AA+NNPERAVEYL +GIPE+ +A+ + +A A
Sbjct: 153 Q----------------ALSAAFNNPERAVEYLMNGIPEEL----LAQMTTTPEAAAASA 192
Query: 238 QTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANP 297
T A AAP T+ S + TL+ +RN QFQ +RT+++ NP
Sbjct: 193 GTTADASAAPTVTA-----------------PSRSVGSTLEQIRNEPQFQQIRTLIRNNP 235
Query: 298 QILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEG 335
Q+L +Q+L +NP I +Q +F+ +INEP E
Sbjct: 236 QLLSQFIQQLQIENPEAFAAISANQQEFINMINEPGEA 273
>gi|451994966|gb|EMD87435.1| hypothetical protein COCHEDRAFT_1206663 [Cochliobolus
heterostrophus C5]
Length = 379
Score = 108 bits (269), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 128/395 (32%), Positives = 182/395 (46%), Gaps = 88/395 (22%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ K LK F IE +P + + +K I+ +G +V QQ LI+ GK+L+D T+E
Sbjct: 1 MKITFKDLKQNKFVIEAEPSETIGALKSKIQAEKGWEV---PQQKLIYSGKILQDANTVE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQT--TSSAPPTSTQPTTTSQTPAPT 118
+ E F+V M++K K + + +S+ +A T SAP TQ +TT PA
Sbjct: 58 SYNIEEKGFIVCMVSKPKAAPAASSSRAAPSTPAPAPAQTPSAPQAPTQSSTTHNAPATP 117
Query: 119 VAPPQSVP-ESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQ 177
P E P+A L G EA +
Sbjct: 118 SPAPAQASGERFNDPSA-------------------------------LTMGGEREAAIA 146
Query: 178 QILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE----QTAVPPVARAS-----A 228
+ MG + R + RA+RAA+ NP+RAVEYL +GIPE + A ARA A
Sbjct: 147 NMESMG---FARADIDRAMRAAFFNPDRAVEYLLTGIPESALQEQAQQTQARAPNSPTPA 203
Query: 229 GGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNA---------------- 272
GG AG A QA P+SG + P++LF
Sbjct: 204 GGNAG---ATAQAN------PSSGGD-EPMNLFEAAAAAQNRGGAGGARSGGTGGAGGGA 253
Query: 273 -GAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINE 331
A +LDFLRN+ QFQ LR +VQ PQ+L+P+LQ++G NP L ++I + FL+L+ E
Sbjct: 254 LNANSLDFLRNNPQFQQLRQVVQQQPQMLEPILQQVGAGNPQLAQMIASNPEQFLQLLAE 313
Query: 332 PVEGGEGNVLGQLASAMP---QAVTVTPEEREAIE 363
+ + +P QA++VT EEREAIE
Sbjct: 314 DADED---------APLPPGAQAISVTEEEREAIE 339
>gi|289741355|gb|ADD19425.1| nucleotide excision repair factor NEF2 RAD23 component [Glossina
morsitans morsitans]
Length = 377
Score = 108 bits (269), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 110/377 (29%), Positives = 174/377 (46%), Gaps = 50/377 (13%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ +KTL F +E V D+K ++ + V P QQ LI+ G+VL + L+
Sbjct: 1 MKLTIKTLDQKTFYVEFDDTRTVWDLKSHLHKLPEVGVQPELQQ-LIYAGRVLDNDNALK 59
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ E F+VVM K+ S++ V+A +T + T P+ ++T T
Sbjct: 60 TYSIDERKFLVVMAKKAPPSAAAKEEVAAI-----KTAKPSEQTRASPSAAAETIKKTEE 114
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQ-AASNLVAGSNL------- 172
P + PPPAA A A A A P++ ++ N++ +
Sbjct: 115 PKRQEKAKTPPPAAQAAASPAATPAATETQPLALDQELQQNPQHRNILEAMDFSPTAAAS 174
Query: 173 EATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQ-TAVPPVARASAGGQ 231
E+ VQ+I+ MG D V RAL A++NNP+RA+EYL GIP+ A+PP+
Sbjct: 175 ESLVQEIMSMGYAEAD---VRRALLASFNNPDRAIEYLIEGIPDFPEALPPL-------- 223
Query: 232 AGNPPAQTQAQQPAAPAPTSGPNANPLD-----LFPQGLPNMGSNAGAGTLDFLRNSQQF 286
PT P+ NP+ G G L+FLR +F
Sbjct: 224 -----------------PTIQPDVNPVSGVTVAGIGSGGGGGGGGGAGSPLNFLREDPRF 266
Query: 287 QALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLAS 346
+R +++ P++L +L +G+ NP L+ +I+EHQ DF+ ++NEP + G +
Sbjct: 267 IQMRRVIRQRPELLSSVLARIGETNPVLLSIIREHQDDFVAMLNEPEDEGSEEAPSEGHE 326
Query: 347 AMPQAVTVTPEEREAIE 363
A Q +++T EE AIE
Sbjct: 327 A--QEISLTEEESNAIE 341
>gi|451846054|gb|EMD59365.1| hypothetical protein COCSADRAFT_185234 [Cochliobolus sativus
ND90Pr]
Length = 379
Score = 107 bits (267), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 125/398 (31%), Positives = 181/398 (45%), Gaps = 94/398 (23%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ K LK F IE +P + + +K I+ +G +V QQ LI+ GK+L+D T+E
Sbjct: 1 MKITFKDLKQNKFVIEAEPSETIGALKSKIQAEKGWEV---PQQKLIYSGKILQDANTVE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQT--TSSAPPTSTQPTTTSQTPAPT 118
+ E F+V M++K K + + +S+ +A T SAP TQ +TT PA
Sbjct: 58 SYNIEEKGFIVCMVSKPKAAPAASSSKAAPSTPAPAPAQTPSAPQAPTQSSTTHNAPATP 117
Query: 119 VAPPQSVP-ESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQ 177
P E P+A L G EA +
Sbjct: 118 SPAPAQASGERFNDPSA-------------------------------LTMGGEREAAIA 146
Query: 178 QILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPA 237
+ MG + R + RA+RAA+ NP+RAVEYL +GIPE +A+ A+
Sbjct: 147 NMESMG---FARADIDRAMRAAFFNPDRAVEYLLTGIPE-SALQEQAQ------------ 190
Query: 238 QTQAQQPAAPAPTSG-----PNANP-------LDLFPQGLPNMGSNA------------- 272
QTQA+ P +P P G ANP ++LF
Sbjct: 191 QTQARAPNSPTPAGGNTGATAQANPSSGGDEPMNLFEAAAAAQNRGGAGGARSGGTGGAG 250
Query: 273 ----GAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRL 328
A +LDFLRN+ QFQ LR +VQ PQ+L+P+LQ++G NP L ++I + FL+L
Sbjct: 251 AGALNANSLDFLRNNPQFQQLRQVVQQQPQMLEPILQQVGAGNPQLAQMIASNPEQFLQL 310
Query: 329 INEPVEGGEGNVLGQLASAMP---QAVTVTPEEREAIE 363
+ E + + +P QA++VT EEREAIE
Sbjct: 311 LAEDADED---------APLPPGAQAISVTEEEREAIE 339
>gi|388580050|gb|EIM20368.1| UV excision repair protein Rad23 [Wallemia sebi CBS 633.66]
Length = 336
Score = 107 bits (267), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 111/368 (30%), Positives = 166/368 (45%), Gaps = 79/368 (21%)
Query: 2 KVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEE 61
+V +KTL+ F++ V+ D ++ +K+ IE QG + + Q LI GK+L D T+E
Sbjct: 3 EVTIKTLQQKVFKVVVEDSDTIATLKQKIEADQG---FAVNTQKLIFSGKILADDRTIES 59
Query: 62 NKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAP 121
++ E F+VVM++K K QP T + A P
Sbjct: 60 LQIKEKDFLVVMVSKPK---------------------------PQPATPKKDEAKVEQP 92
Query: 122 PQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILD 181
Q +S P P PA + P+ Q +NL GS LE V +++
Sbjct: 93 AQ---KSEQPEQPEQPQQTQQPASSSTPS----------QPGNNLAMGSELETAVSNMVE 139
Query: 182 MGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQA 241
MG +DR V++A+RA++NNPERAVEYL +GIP+ P + P T A
Sbjct: 140 MG---FDRAQVMKAMRASFNNPERAVEYLMTGIPQHLQQPEQSEQPQQQSEQQPNQPTGA 196
Query: 242 QQPAAPAPTSGPNANPLDLFP----QGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQA-- 295
PL+LF Q P G A G + QQ Q L +VQA
Sbjct: 197 ---------------PLNLFDAARQQSSPAAGQAAPGG------DGQQAQ-LAELVQAAQ 234
Query: 296 -NPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTV 354
NP +LQ ++QE+ + NP L +L+ ++ L L++ EG EG+ Q Q + +
Sbjct: 235 ENPALLQSLIQEIAQSNPTLAQLLAQNPQALLDLLSG--EGAEGDF--QDEDGPGQVIHL 290
Query: 355 TPEEREAI 362
T E+ EA+
Sbjct: 291 TEEQAEAV 298
>gi|291416572|ref|XP_002724522.1| PREDICTED: UV excision repair protein RAD23 homolog B-like, partial
[Oryctolagus cuniculus]
Length = 365
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 101/367 (27%), Positives = 160/367 (43%), Gaps = 82/367 (22%)
Query: 13 FEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVV 72
F I++ P V +K+ IE QG D +P + Q L++ G+VL D L + ++ E+ V V
Sbjct: 13 FHIDIDPGQTVRALKEKIEAEQGRDAFPVAGQQLLYAGRVLPDDAVLRDCQIHEHHAVTV 72
Query: 73 MLTK-----------------------------SKVSSSGASTVSAAPANQAQTTSSAPP 103
++ + + + + AAPA + SAP
Sbjct: 73 LVARPEAATTAAPATATATATAGQSHPATAALAGAGAPARGPALPAAPATSTR-AKSAPA 131
Query: 104 TSTQPTTTSQTPAPTVAPPQSVP------------ESAPPPAAPAPAPAPAPAPAPAPAP 151
TST+ + + + + + A PP AP+P P A A P+
Sbjct: 132 TSTRAKSAPASVSASSTASAQPAPAGAPASPQAAGQQAGPPGAPSPTPDDAIA---GPSS 188
Query: 152 VSSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLY 211
+ S+ QAA L+ E V +I+ MG ++RE V+ ALRA++NNP RAVEYL
Sbjct: 189 RAQPSE---QAARALLTRPASEQMVAEIVSMG---YEREHVLAALRASFNNPHRAVEYLL 242
Query: 212 SGIPEQTAV-----PPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLP 266
G+P A PP A +S G++ A A A TSG +PLD+
Sbjct: 243 MGLPGDRASAAEVEPPQAGSSGAGRSSAVVAD-------AGATTSGSGGHPLDV------ 289
Query: 267 NMGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFL 326
L N+ +FQ LR ++Q P +L +LQ + Q+P L R +++Q +
Sbjct: 290 -------------LWNAPEFQLLRQILQYFPSLLPGVLQRICPQDPLLRRQFRQYQDYLV 336
Query: 327 RLINEPV 333
++ P+
Sbjct: 337 HMLTAPM 343
>gi|344244513|gb|EGW00617.1| UV excision repair protein RAD23-like A [Cricetulus griseus]
Length = 316
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 79/210 (37%), Positives = 111/210 (52%), Gaps = 45/210 (21%)
Query: 162 AASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP 221
AAS LV GS E + +I+ MG ++RE V+ ALRA+YNNP RAVEYL +GIP
Sbjct: 79 AASTLVTGSEYETMLTEIMSMG---YERERVVAALRASYNNPHRAVEYLLTGIP------ 129
Query: 222 PVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLR 281
S + G+ +QPA A AG L+FLR
Sbjct: 130 ----GSPEPEHGSVQESQVPEQPAVEA-----------------------AGENPLEFLR 162
Query: 282 NSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP------VEG 335
+ QFQ +R ++Q NP +L +LQ+LG++NP L++ I HQ F++++NEP +
Sbjct: 163 DQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELADISD 222
Query: 336 GEGNVLGQLASAMPQA--VTVTPEEREAIE 363
EG V G + PQ + VTP+E+EAIE
Sbjct: 223 VEGEV-GAIGEEAPQMNYIQVTPQEKEAIE 251
>gi|196008299|ref|XP_002114015.1| hypothetical protein TRIADDRAFT_58050 [Trichoplax adhaerens]
gi|190583034|gb|EDV23105.1| hypothetical protein TRIADDRAFT_58050 [Trichoplax adhaerens]
Length = 387
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 73/215 (33%), Positives = 103/215 (47%), Gaps = 46/215 (21%)
Query: 173 EATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQA 232
E V +I+ MG + R+ V+ ALRA++NNP RAVEYL +GIP Q
Sbjct: 159 EQIVSEIVSMG---FPRDQVLLALRASFNNPHRAVEYLTTGIPANVL---------ETQT 206
Query: 233 GNPPAQTQAQQPAAP---------APTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNS 283
P TQ++ A P NPL PQG G L FLR+
Sbjct: 207 AETPTATQSESQAEPQTQPQPQEEEDQQQRQQNPLPSSPQG----------GPLGFLRSQ 256
Query: 284 QQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNV--- 340
F +R +VQ+NP+ L PMLQ+LG+ NP L+ LI+ HQ++F+ L+NEP+ G+ +
Sbjct: 257 AVFSQMRQIVQSNPEALAPMLQQLGQNNPQLLELIRNHQSEFMELMNEPITEGQPRIAPY 316
Query: 341 ------------LGQLASAMPQAVTVTPEEREAIE 363
++VT EE+EAI+
Sbjct: 317 QQQQQQQQPSRQSPGGPGLGSLGISVTQEEKEAID 351
>gi|356498318|ref|XP_003518000.1| PREDICTED: uncharacterized protein LOC100787330 [Glycine max]
Length = 159
Score = 104 bits (260), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 50/76 (65%), Positives = 61/76 (80%), Gaps = 1/76 (1%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
++ F TLKGTHF ++V P D V+DVK NIE QG DVYP +Q+MLIHQGKVLKD TTLE
Sbjct: 45 LRGFEVTLKGTHFVVQVNPRDTVADVK-NIEIAQGVDVYPGAQRMLIHQGKVLKDATTLE 103
Query: 61 ENKVAENSFVVVMLTK 76
ENKV E++ VV+ML+K
Sbjct: 104 ENKVVEDNSVVIMLSK 119
>gi|67523697|ref|XP_659908.1| hypothetical protein AN2304.2 [Aspergillus nidulans FGSC A4]
gi|40745259|gb|EAA64415.1| hypothetical protein AN2304.2 [Aspergillus nidulans FGSC A4]
Length = 378
Score = 104 bits (260), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 127/388 (32%), Positives = 190/388 (48%), Gaps = 75/388 (19%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ + LK F I+ +P + V VK+ I T +G DV P+ + LI+ GK+L+D T+E
Sbjct: 1 MKLTFRDLKQQKFVIDAEPSETVGQVKEKISTEKGWDV-PSLK--LIYSGKILQDDKTVE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTS-QTPAPTV 119
+ E F+V M++K K TQP++ S TPA +V
Sbjct: 58 FYNIEEKGFIVCMVSKPK---------------------------TQPSSQSPSTPAKSV 90
Query: 120 APPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASN----LVAGSNLEAT 175
+ P + P + P PA P+P SS + + N L+ GS E
Sbjct: 91 TSTPAPPPAPAPSTNTSTTATSGPVPA-TPSPASSGAAQSSASTFNDPSALLTGSQSEEV 149
Query: 176 VQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYS---------GIPEQTAVPPVARA 226
+ Q++ MG ++RE + RA+RAA+ NP+RA+EYL + GIPE R+
Sbjct: 150 INQMMSMG---FEREQINRAMRAAFFNPDRAIEYLLNLLISAFAIKGIPENIQQEQQQRS 206
Query: 227 SAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAG--------TLD 278
+A A A A AP TSG + P++LF GAG +LD
Sbjct: 207 AATTPA----APQAAAASGAPPATSGED-EPVNLFEAAAQAGEGRGGAGGASGGEPQSLD 261
Query: 279 FLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEG 338
FLRN FQ LR +VQ PQ+L+P+LQ++G+ NP + +LI +++ FL+L++E +
Sbjct: 262 FLRNHPAFQQLRQLVQQQPQMLEPILQQVGQGNPQIAQLIGQNEEAFLQLLSEEDD---- 317
Query: 339 NVLGQLASAMPQAVT---VTPEEREAIE 363
+A+P T VT EER+AIE
Sbjct: 318 -------AALPPGTTQIHVTEEERDAIE 338
>gi|346324523|gb|EGX94120.1| UV excision repair protein (RadW), putative [Cordyceps militaris
CM01]
Length = 1066
Score = 104 bits (260), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 124/374 (33%), Positives = 174/374 (46%), Gaps = 53/374 (14%)
Query: 4 FVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENK 63
+ LK F +EV+P D +S VK+ I +G D Q LI+ GK+LKD T+
Sbjct: 689 LAQDLKQQKFTLEVEPADLISAVKEKISAEKGWD---PKHQKLIYSGKILKDEETVASYN 745
Query: 64 VAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQ 123
+ E FVV M+ K K + A+ + AP + TPA AP Q
Sbjct: 746 IEEKGFVVCMVNKPKEKPAAAAPSAVAPPATPAQP------------VTSTPAVPAAPNQ 793
Query: 124 S-VPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILDM 182
S +S PP P+P + + + G A+ L G+ A + + M
Sbjct: 794 SSANQSTAPPVTPSPNRS------------ADAAAPTGADAAGLTMGAERAAAITSMEAM 841
Query: 183 GGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQ 242
G ++R + A+RAA+NNP+RAVEYL +GIP+ AR +A + PA A
Sbjct: 842 G---FERSQIEAAMRAAFNNPDRAVEYLLTGIPDNIQQEQQARQAAAAASAAAPAAPAAP 898
Query: 243 QPAAPAPTSGPNANPLDLFPQGLPNMG----------SNAGAGTLDFLRNSQQFQALRTM 292
Q N DL Q G ++A G LDFLR + QFQ LR +
Sbjct: 899 QTTQTGGDEEGGINLFDLAAQHGGTGGSRGSSGDAGGASADLGNLDFLRTNPQFQQLRQV 958
Query: 293 VQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMP--- 349
VQ PQ+L+P+LQ+LG NP L +LI + FL L+ E E +V +P
Sbjct: 959 VQQQPQMLEPILQQLGAGNPQLAQLIASNPDAFLHLLG---EDAEDDV------PLPPGA 1009
Query: 350 QAVTVTPEEREAIE 363
QA++VT EER+AIE
Sbjct: 1010 QAISVTEEERDAIE 1023
>gi|357504019|ref|XP_003622298.1| hypothetical protein MTR_7g032690 [Medicago truncatula]
gi|355497313|gb|AES78516.1| hypothetical protein MTR_7g032690 [Medicago truncatula]
Length = 416
Score = 104 bits (259), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 48/81 (59%), Positives = 61/81 (75%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI V P D + VK IE +QG D YP QQ+LIH GKVLKD TTL
Sbjct: 290 MKLTVKTLKGSHFEIRVHPSDSIMAVKTTIEDIQGKDNYPCRQQLLIHNGKVLKDETTLA 349
Query: 61 ENKVAENSFVVVMLTKSKVSS 81
+N+V+E+ F+VVML+K +S+
Sbjct: 350 DNEVSEDGFLVVMLSKIWISN 370
>gi|357504017|ref|XP_003622297.1| hypothetical protein MTR_7g032690 [Medicago truncatula]
gi|355497312|gb|AES78515.1| hypothetical protein MTR_7g032690 [Medicago truncatula]
Length = 697
Score = 104 bits (259), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 48/81 (59%), Positives = 61/81 (75%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI V P D + VK IE +QG D YP QQ+LIH GKVLKD TTL
Sbjct: 571 MKLTVKTLKGSHFEIRVHPSDSIMAVKTTIEDIQGKDNYPCRQQLLIHNGKVLKDETTLA 630
Query: 61 ENKVAENSFVVVMLTKSKVSS 81
+N+V+E+ F+VVML+K +S+
Sbjct: 631 DNEVSEDGFLVVMLSKIWISN 651
>gi|357504021|ref|XP_003622299.1| hypothetical protein MTR_7g032690 [Medicago truncatula]
gi|355497314|gb|AES78517.1| hypothetical protein MTR_7g032690 [Medicago truncatula]
Length = 398
Score = 104 bits (259), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 48/81 (59%), Positives = 61/81 (75%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI V P D + VK IE +QG D YP QQ+LIH GKVLKD TTL
Sbjct: 272 MKLTVKTLKGSHFEIRVHPSDSIMAVKTTIEDIQGKDNYPCRQQLLIHNGKVLKDETTLA 331
Query: 61 ENKVAENSFVVVMLTKSKVSS 81
+N+V+E+ F+VVML+K +S+
Sbjct: 332 DNEVSEDGFLVVMLSKIWISN 352
>gi|254569268|ref|XP_002491744.1| Protein with ubiquitin-like N terminus, recognizes and binds
damaged DNA (with Rad4p) [Komagataella pastoris GS115]
gi|238031541|emb|CAY69464.1| Protein with ubiquitin-like N terminus, recognizes and binds
damaged DNA (with Rad4p) [Komagataella pastoris GS115]
gi|328351754|emb|CCA38153.1| Probable DNA repair protein RAD23 [Komagataella pastoris CBS 7435]
Length = 338
Score = 103 bits (258), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 103/363 (28%), Positives = 159/363 (43%), Gaps = 63/363 (17%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ K LK ++V P D + K+ + TV+ SD AS+ ++ GKVL+D +
Sbjct: 1 MKIVFKDLKKEKVILDVDPTDTILSAKEKLATVKNSD---ASKIKFVYSGKVLQDDKDFD 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
KV EN ++ ML + P N + TST+ + T+ AP +A
Sbjct: 58 AFKVKENDVIIFMLP--------SVFKKEEPKN---LENRIDKTSTESSKTTTIAAPGIA 106
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P P PV++ AS G++ E ++ I+
Sbjct: 107 VP--------------------------PVPVNTSGSF---NASTFAVGNDRENAIRNIM 137
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
+MG +DR V ALRAA+NNP+RAVEYL +G+P P AG ++ ++Q
Sbjct: 138 EMG---YDRSQVEAALRAAFNNPDRAVEYLLTGLPVNNEEPI-----AGSRSAPNDGRSQ 189
Query: 241 AQQPAAPAPTSGPNANPLDLFP-QGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQI 299
TS A DLF + + G T + ++Q NP++
Sbjct: 190 PVSSTGVESTSTETAPGTDLFEAAAVASSGQQQRENT-----QRDDLMQIGELIQNNPEM 244
Query: 300 LQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEER 359
++P LQ++ NP L LIQ++ +F+R + +EG G G+L Q + V PEE
Sbjct: 245 VEPFLQQIASSNPQLAELIQQNPEEFMRAL---MEGDNGE--GELEDEGVQ-IQVAPEEE 298
Query: 360 EAI 362
AI
Sbjct: 299 AAI 301
>gi|124359456|gb|ABN05900.1| Ubiquitin [Medicago truncatula]
Length = 674
Score = 103 bits (258), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 48/81 (59%), Positives = 61/81 (75%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI V P D + VK IE +QG D YP QQ+LIH GKVLKD TTL
Sbjct: 548 MKLTVKTLKGSHFEIRVHPSDSIMAVKTTIEDIQGKDNYPCRQQLLIHNGKVLKDETTLA 607
Query: 61 ENKVAENSFVVVMLTKSKVSS 81
+N+V+E+ F+VVML+K +S+
Sbjct: 608 DNEVSEDGFLVVMLSKIWISN 628
>gi|400602559|gb|EJP70161.1| UV excision repair protein Rad23 [Beauveria bassiana ARSEF 2860]
Length = 397
Score = 103 bits (258), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 129/395 (32%), Positives = 177/395 (44%), Gaps = 73/395 (18%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLI------------- 47
MKV + LK F +EV+P D +S VK+ I T +G D P Q+++
Sbjct: 1 MKVTFRDLKQQKFTLEVEPTDLISAVKERISTEKGWD--PKHQKLIYSGADEQNPAPTAP 58
Query: 48 -----HQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAP 102
GK+LKD T+ + E FVV M+ K K + A+ +AAP +
Sbjct: 59 PFLTNFLGKILKDEETVASYNIEEKGFVVCMVNKPKEKPAAATPSAAAPPATPAQPAQG- 117
Query: 103 PTSTQPTTTSQTPAPTVAPPQSVPE-SAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQ 161
TPA AP QS +A PA P P + A APA G
Sbjct: 118 -----------TPAAPAAPNQSSASLTANIPATPTPNRS---TDATAPA---------GG 154
Query: 162 AASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP 221
++ L G+ A + + MG ++R + A+RAA+NNP+RAVEYL +GIPE
Sbjct: 155 DSAGLTMGTERAAAITSMEAMG---FERSQIEAAMRAAFNNPDRAVEYLLTGIPENIQQE 211
Query: 222 PVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQ----------GLPNMGSN 271
AR +A A Q G + N DL Q +
Sbjct: 212 QQARQAAAAAP---AAPAAPQTTQTGGDEEGGSVNLFDLAAQHGGSGGSRGGSGDAAAAA 268
Query: 272 AGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINE 331
A G LDFLR + QFQ LR +VQ PQ+L+P+LQ+LG NP L +LI + FL+L+ E
Sbjct: 269 ADLGNLDFLRTNPQFQQLRQVVQQQPQMLEPILQQLGAGNPQLAQLIASNPDAFLQLLGE 328
Query: 332 PVEGGEGNVLGQLASAMP---QAVTVTPEEREAIE 363
E +P QA++VT EER+AIE
Sbjct: 329 DAEDD---------VPLPPGAQAISVTEEERDAIE 354
>gi|308510422|ref|XP_003117394.1| CRE-RAD-23 protein [Caenorhabditis remanei]
gi|308242308|gb|EFO86260.1| CRE-RAD-23 protein [Caenorhabditis remanei]
Length = 323
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 110/369 (29%), Positives = 159/369 (43%), Gaps = 95/369 (25%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+ V +TL +F +E+ E +++VK + + +G D P Q+ LI+ GK+L D T +
Sbjct: 3 LSVAFRTLTQLNFHLELNEEQTIAEVKALVASERGDDYAPELQK-LIYNGKILDDATKVG 61
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E + FVVVML K KV T+ +P +T+ + AP V
Sbjct: 62 EVGFDSSKFVVVMLAKKKV------------------------TAAEPASTATSSAPVV- 96
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
E+AP A + A APA ++ S E TV I
Sbjct: 97 -----QENAPSTPAAPAPASIADPVPAAPAAAEQLT-------------SQQEDTVSAIT 138
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
MG +DRE I ALRAA+ N +RAVE+L +GIPE
Sbjct: 139 GMG---YDREQTIAALRAAFWNADRAVEFLLTGIPEDVV--------------------- 174
Query: 241 AQQPA---APAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANP 297
Q+P APA + +AN L+ L N Q +R M+Q NP
Sbjct: 175 DQEPLLADAPAVENEEDAN------------------DDLNMLANMPQLGEIRNMIQQNP 216
Query: 298 QILQPMLQELGKQNPHLMRLIQEHQTDFLRLIN--EPVEGG--EGNVLGQLASAMPQAVT 353
++L +LQ+L NP L++ IQ +Q F+ ++N P GG EGN Q +
Sbjct: 217 EMLAAVLQQLAAVNPRLVQTIQNNQQAFMDILNGSAPPAGGVEEGN--AQARQPRRHVIH 274
Query: 354 VTPEEREAI 362
++PEE EAI
Sbjct: 275 LSPEEAEAI 283
>gi|444723953|gb|ELW64577.1| UV excision repair protein RAD23 like protein B [Tupaia chinensis]
Length = 302
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 81/214 (37%), Positives = 113/214 (52%), Gaps = 21/214 (9%)
Query: 22 KVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSS 81
+V +K+ IE+ +G D +P + Q LI+ GK+L D T L+E K+ E +FVVVM+TK K +
Sbjct: 3 QVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPKAVT 62
Query: 82 SGASTVSAA--PANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQSVPESAPPPAAPAPAP 139
+ A T + PA TSS P Q + AP P P S + PAPA
Sbjct: 63 TPAPTTTQQSNPATTTTVTSSTAPAVAQAPAPTPALAPASTPASITPVSTTVSSEPAPAS 122
Query: 140 A---PAPAPAPAPAPVSSV-------------SDVYGQAASNLVAGSNLEATVQQILDMG 183
A PA PA PV++ S+++ A S LV G + E V +I+ MG
Sbjct: 123 ATKQEKPAEKPADTPVATSPTSTDSTSGDSSRSNLFEDATSALVTGQSYENMVTEIMSMG 182
Query: 184 GGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQ 217
++RE VI ALRA++NNP+RAVEYL I +
Sbjct: 183 ---YEREQVIAALRASFNNPDRAVEYLLMQISQH 213
>gi|146161955|ref|XP_001008308.2| UBA/TS-N domain containing protein [Tetrahymena thermophila]
gi|146146601|gb|EAR88063.2| UBA/TS-N domain containing protein [Tetrahymena thermophila SB210]
Length = 373
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 110/366 (30%), Positives = 171/366 (46%), Gaps = 90/366 (24%)
Query: 1 MKVFVKTLKGT-HFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVL-KDVTT 58
MK+ +KTLKGT F++ ++ V+++K+ I T + + L+H+GK L +D T
Sbjct: 1 MKINIKTLKGTDFFDVNLEETATVAELKEKIATEKQKEKDTIK---LVHKGKQLTEDSKT 57
Query: 59 LEENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPT 118
L E + +N FV++M + K A A ++ TTS+A T+T PTT P P
Sbjct: 58 LGELGIKDNDFVILMFFQKKAEKEDAP--QQAQSDTTSTTSAASTTATNPTTV---PKPA 112
Query: 119 VAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQ 178
V+ P + ++ S+L+ G LEA +++
Sbjct: 113 VSQPATTQQTGSQGTG-----------------------------SDLLQGPELEAKIKE 143
Query: 179 ILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG-IPEQTAVPPVARASAGGQAGNPPA 237
I MG ++R V++AL+AAY NPERAV+YL SG IP++ P+
Sbjct: 144 IESMG---FERPKVLQALKAAYYNPERAVDYLLSGNIPKE------------------PS 182
Query: 238 QTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANP 297
Q Q+ PL QGL G L L + QFQ + ++ NP
Sbjct: 183 QQQS---------------PL----QGL----QGPGVEQLAQLAQNPQFQHIAQAIRQNP 219
Query: 298 QILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPE 357
+LQP++Q+L + NP + RL+Q++ FL+L+ E G L P A+ VTPE
Sbjct: 220 ALLQPVMQQLAQTNPDVARLLQQNPQAFLQLLLAASENEGGQTLP------PNAIQVTPE 273
Query: 358 EREAIE 363
E+ I+
Sbjct: 274 EKADID 279
>gi|167998815|ref|XP_001752113.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162696508|gb|EDQ82846.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 76
Score = 103 bits (257), Expect = 1e-19, Method: Composition-based stats.
Identities = 48/76 (63%), Positives = 61/76 (80%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG HF+++V ++ VS VK+ IE QG D +P +QQ+LIHQGKVLKD TT+
Sbjct: 1 MKISVKTLKGNHFDLQVAEDELVSSVKRKIEGSQGKDAFPCAQQLLIHQGKVLKDETTMA 60
Query: 61 ENKVAENSFVVVMLTK 76
+NKVAEN F+VVMLTK
Sbjct: 61 DNKVAENGFLVVMLTK 76
>gi|428184303|gb|EKX53158.1| hypothetical protein GUITHDRAFT_64501 [Guillardia theta CCMP2712]
Length = 346
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 101/340 (29%), Positives = 148/340 (43%), Gaps = 85/340 (25%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDV-----YPASQQM-LIHQGKVLK 54
MKV VK++ G +FE+E+ V D+KK I V+ DV +S+ M +I QGK+L
Sbjct: 1 MKVKVKSIAGDNFEVEIGGSSTVFDLKKAISEVKRYDVTDEMLRDSSKGMKIILQGKILD 60
Query: 55 DVTTLEENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQT 114
D +QT SS P +
Sbjct: 61 D---------------------------------------SQTISSLGP---------KI 72
Query: 115 PAPTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEA 174
+ PP+ V + P PA V+S G + ++ G +LEA
Sbjct: 73 SFFVMMPPEGVTLKKVEVSKPQDQPA-----------VTS-----GLQNNTILMGEDLEA 116
Query: 175 TVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGN 234
+V++I MG + V RALR A+NNP+RAVE LY+G + A+ Q
Sbjct: 117 SVREICGMG---FAESEVRRALRLAFNNPDRAVEILYNGASDD------AQQMQNEQPAE 167
Query: 235 PPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAG--TLDFLRNSQQFQALRTM 292
Q Q P AP+ S P +D L S AGAG L+ LR QF +R
Sbjct: 168 QQQQQQGASPEAPSHGSMPLRFNMD----ALAVNASEAGAGGNQLEMLRRDPQFAFVRHC 223
Query: 293 VQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP 332
VQ+ P +L +L ++G+ NP L+ I ++Q +F+R++NEP
Sbjct: 224 VQSQPSLLPELLLQIGRVNPSLLATINQNQAEFVRIVNEP 263
>gi|302916881|ref|XP_003052251.1| hypothetical protein NECHADRAFT_60284 [Nectria haematococca mpVI
77-13-4]
gi|256733190|gb|EEU46538.1| hypothetical protein NECHADRAFT_60284 [Nectria haematococca mpVI
77-13-4]
Length = 389
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 127/388 (32%), Positives = 178/388 (45%), Gaps = 67/388 (17%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV K LK F ++V+P + +S VK+ I +G D P Q+ LI+ GK+LKD T+
Sbjct: 1 MKVTFKDLKQQKFTLDVEPTELISAVKEKISAEKGWD--PKLQK-LIYSGKILKDEETVA 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ E FVV M+ K K + + +S+ P T QP + TPA A
Sbjct: 58 SYNIEEKGFVVCMVNKPKPKPAAPAA----------ESSAPPATPAQPI--ANTPAAPAA 105
Query: 121 PPQSVPESAPPPAAPAPAPA-PAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQI 179
P QS A PA P P + A + AP+ P S L G+ + +
Sbjct: 106 PVQSTSHQAAVPATPTPQRSVEAGSGAPSNEP------------SGLAMGAQRAEAIANM 153
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 239
MG ++R + A+RAA+NNP+RAVEYL +GIPE + A +
Sbjct: 154 EAMG---FERSQIEAAMRAAFNNPDRAVEYLLTGIPENIRQEQQQQQQQQHHAASGGQAP 210
Query: 240 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGA-------------------GTLDFL 280
AQ A G + N DL Q + +G G LDFL
Sbjct: 211 AAQPAAHGGDEGG-SVNLFDLAAQRGGSGRGGSGGNQAAAAAAAAAAAGQGGDLGNLDFL 269
Query: 281 RNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNV 340
R++ QFQ LR +VQ PQ+L+P+LQ+LG NP L LI + FL+L+ E +
Sbjct: 270 RHNAQFQQLRQVVQQQPQMLEPILQQLGAGNPQLAELIASNPDQFLQLLGEDAD------ 323
Query: 341 LGQLASAMP-----QAVTVTPEEREAIE 363
+P QA++VT EER+AIE
Sbjct: 324 -----DDVPLPPGAQAISVTEEERDAIE 346
>gi|340384331|ref|XP_003390667.1| PREDICTED: UV excision repair protein RAD23 homolog B-like
[Amphimedon queenslandica]
Length = 363
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 82/210 (39%), Positives = 117/210 (55%), Gaps = 24/210 (11%)
Query: 167 VAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP----EQTAVPP 222
+ G++ E TV ++ MG + R V+RAL+A+YNNP RA+EYL P E+ A P
Sbjct: 110 ITGTDYERTVNDMVGMG---FMRNDVVRALQASYNNPTRAMEYLCGERPMPTLEEEAEPQ 166
Query: 223 VARASAGGQ----AGNPPAQTQAQQPAAPAPTSGP-NANPLDLFPQG-LPNMGSNAGAGT 276
+ AGGQ +PP Q+PA + S P +A P PQG L G + +
Sbjct: 167 PRGSGAGGQQVPLTSSPPQAPPTQRPAGQSQQSTPPSAAPRP--PQGGLSAGGGQSASNV 224
Query: 277 LDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVE-G 335
L L QFQALR VQ NP +L +LQE+G+ NP L++LI ++Q +F+ L+N+P +
Sbjct: 225 LQGLSQLPQFQALRAAVQQNPGLLPSLLQEIGQHNPELLQLINQNQQEFVDLLNQPPQPI 284
Query: 336 GEGNVL--GQLASAMPQAVTVTPEEREAIE 363
G G L G + ++ VT EEREAI+
Sbjct: 285 GSGQELPPGTV------SIQVTQEEREAID 308
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 50/76 (65%), Gaps = 1/76 (1%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + VKTL+ F+IE++ V D+KK IE QG + +PA+ Q LI+ GK+L D L
Sbjct: 1 MIITVKTLQQKTFKIEIEESASVLDLKKAIEANQG-EAFPAAGQKLIYSGKILNDSQPLS 59
Query: 61 ENKVAENSFVVVMLTK 76
+ + E++FVVVM++K
Sbjct: 60 DYSIQESNFVVVMVSK 75
>gi|320586564|gb|EFW99234.1| uv excision repair protein [Grosmannia clavigera kw1407]
Length = 400
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 127/389 (32%), Positives = 186/389 (47%), Gaps = 56/389 (14%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV K LK F IE++P + ++ VK+ I +G + Q LI+ GK+LKD T+E
Sbjct: 1 MKVTFKDLKQQKFVIEIEPSETIAAVKQKISDERG---WAPKTQKLIYSGKILKDEDTVE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
K+ E FVV ++ K K + S+ +A+P+ A+ ++ A + + + A
Sbjct: 58 SYKIEEKGFVVCVVNKPKPAPVAESSSAASPSTPARASAVAATPAAPAAAAAASSAAIAQ 117
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
+ + P PAA A P A + SV +A +N+ A
Sbjct: 118 AAVA---ATPSPAARAAGPTAGGATSYTDPNSFSVGPALQEAITNMEA------------ 162
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYS--GIPEQTAVPPVARASAGGQAGNPPAQ 238
MG ++R + A+RAAYNNP+RAVEYL + GIP+ PP A + A
Sbjct: 163 -MG---FERSQISAAMRAAYNNPDRAVEYLLTLQGIPDNLQPPPAAAGAGAESEAAAAAP 218
Query: 239 TQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNA---------------------GAGTL 277
A PAA + N DL Q GS G G L
Sbjct: 219 AAAAAPAAGIEEHPESVNLFDLAAQHGQGGGSRGAAAQPSADSAAAAAAAAAGSQGLGNL 278
Query: 278 DFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGE 337
DFLR++ QFQ LR +VQ PQ+L+P+LQ+LG NP L +LI ++ FL L++E +G E
Sbjct: 279 DFLRHNAQFQQLRQVVQQQPQMLEPILQQLGAGNPQLAQLIAQNPDQFLSLLSE--DGDE 336
Query: 338 GNVLGQLASAMP---QAVTVTPEEREAIE 363
+ + +P QA++VT EER+AIE
Sbjct: 337 DD------APLPPGAQAISVTEEERDAIE 359
>gi|452846190|gb|EME48123.1| hypothetical protein DOTSEDRAFT_69906 [Dothistroma septosporum
NZE10]
Length = 402
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 127/410 (30%), Positives = 186/410 (45%), Gaps = 96/410 (23%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ K LK F IE +P +K+ VK+ I +G + S Q LI+ GK+L+D T+E
Sbjct: 1 MKLTFKDLKQQKFTIEAEPSEKIGQVKEKISAEKG---WEPSTQKLIYSGKILQDDNTIE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
K+ E F+V M +K K AAP+ A+ ++ A P ST + A + +
Sbjct: 58 SYKIEEKGFIVCMTSKPK----------AAPSKPAEPSTPAKPVSTPAAPAAPQAAQSTS 107
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
Q +P PA+ A P S L G A + +
Sbjct: 108 ASQPPATPSPAPASTAATSESGNFNDP----------------SALALGEQRTAAIAGME 151
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP---EQTAVPPVARASAGGQAGNPPA 237
MG + R+ + RA+RAA+ NP+RAVEYL +GIP +Q P A P
Sbjct: 152 AMG---FARDQIDRAMRAAFFNPDRAVEYLLNGIPASAQQEERPAAASPR--------PT 200
Query: 238 QTQAQQPAAPA----PTSGPNAN-PLDLFPQGLPNMGSNAGAG----------------- 275
Q QQP APA T+ P+ + P++LF Q AGA
Sbjct: 201 SNQGQQPVAPATIATETAAPSGDEPVNLFEQAAQAGRGGAGARGAAGTGAGAGAGAGSLA 260
Query: 276 -------------------TLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMR 316
L+FLR++ QFQ LR +VQ PQ+L+P+LQ++ NP L +
Sbjct: 261 AALGGGQGGGQGGGQAGAANLEFLRSNPQFQQLRQVVQQQPQMLEPILQQVAAGNPQLAQ 320
Query: 317 LIQEHQTDFLRLINEPVEGGEGNVLGQLASAMP---QAVTVTPEEREAIE 363
+I ++ F++L+ E G+ +V A+P Q ++VT EEREAIE
Sbjct: 321 IITQNPEQFMQLL---AEDGDDDV------ALPPGAQQISVTEEEREAIE 361
>gi|114205486|gb|AAI11407.1| Rad23b protein [Rattus norvegicus]
Length = 225
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 71/210 (33%), Positives = 105/210 (50%), Gaps = 42/210 (20%)
Query: 173 EATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP----EQTAVPPVARASA 228
E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP Q V P
Sbjct: 1 ENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAVVDP------ 51
Query: 229 GGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQA 288
PP P +PA + + +G L+FLRN QFQ
Sbjct: 52 ------PPQAVSTGTPQSPAVAAAAATTT--------ATTTTTSGGHPLEFLRNQPQFQQ 97
Query: 289 LRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG------------ 336
+R ++Q NP +L +LQ++G++NP L++ I +HQ F++++NEPV+
Sbjct: 98 MRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQGGGGGGGGG 157
Query: 337 ---EGNVLGQLASAMPQAVTVTPEEREAIE 363
G + + S + VTP+E+EAIE
Sbjct: 158 GGGGGGGIAEAGSGHMNYIQVTPQEKEAIE 187
>gi|363746935|ref|XP_003643857.1| PREDICTED: UV excision repair protein RAD23 homolog A-like [Gallus
gallus]
Length = 214
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 75/202 (37%), Positives = 111/202 (54%), Gaps = 41/202 (20%)
Query: 167 VAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARA 226
V GS E + +I+ MG ++RE V+ ALRA+YNNP RAVEYL +GIP
Sbjct: 11 VTGSEYETMLTEIMSMG---YERERVVAALRASYNNPHRAVEYLLTGIP----------- 56
Query: 227 SAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQF 286
+A PP Q +++ P P P NPL+ FLR QF
Sbjct: 57 -GSPEAERPPVQ-ESRAPEQPQVEGQPGENPLE-------------------FLREQPQF 95
Query: 287 QALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNV---LGQ 343
Q +R ++Q NP +L +LQ+LG++NP L++ I +HQ F++++NEP+ G G++ +G
Sbjct: 96 QNMRQVIQQNPALLPALLQQLGQENPQLLQQISQHQEQFIQMLNEPL-GELGDLEGEMGA 154
Query: 344 LASAMPQA--VTVTPEEREAIE 363
+ PQ + VTP+E+EAIE
Sbjct: 155 IGDESPQMNYIQVTPQEKEAIE 176
>gi|443716613|gb|ELU08047.1| hypothetical protein CAPTEDRAFT_227723 [Capitella teleta]
Length = 335
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 64/171 (37%), Positives = 94/171 (54%), Gaps = 16/171 (9%)
Query: 162 AASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP 221
A S LV G + E TVQ+++ MG + R+ V+RALRA++NNP+RAVEYL SGIP++
Sbjct: 93 AESTLVTGESYEQTVQEMMSMG---FARDMVVRALRASFNNPDRAVEYLLSGIPDEPVPE 149
Query: 222 PVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLR 281
A P A Q AP + S AG L FLR
Sbjct: 150 APVAAPPAAGQQPPAAGGQPPAAPPAAPATPGTP-------------ASTAGEDPLHFLR 196
Query: 282 NSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP 332
++ QF+ +R +VQ+NP +L LQE+ + NP L ++I E+Q F++++N+P
Sbjct: 197 STPQFETMRRLVQSNPGLLSNFLQEIRQANPRLFQMINENQERFVQMLNDP 247
>gi|322707150|gb|EFY98729.1| nucleotide excision repair protein RAD23 [Metarhizium anisopliae
ARSEF 23]
Length = 383
Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 120/390 (30%), Positives = 173/390 (44%), Gaps = 76/390 (19%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQ-GKVLKDVTTL 59
MKV + LK F +EV+P D +S VK+ I +G D P Q+++ GK+LKD T+
Sbjct: 1 MKVTFRDLKQQKFVLEVEPTDLISAVKEKISGEKGWD--PKHQKLIYSGLGKILKDDETV 58
Query: 60 EENKVAENSFVVVMLTKSK----VSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTP 115
+ E FVV M+ K K ++ ++ A Q ++ A P + +T+Q+
Sbjct: 59 ASYNIEEKGFVVCMVNKPKEKPAPAAESSAAAPPATPAQPVASTPAVPAAPAQPSTTQSA 118
Query: 116 APTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEAT 175
AP PQ E+ G+ S L G+
Sbjct: 119 APATPTPQRSGEAG------------------------------GETGSGLAMGAERAEA 148
Query: 176 VQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNP 235
+ + MG ++R + A+RAA+NNP+RAVEYL +GIPE AR +A AG
Sbjct: 149 ITNMEAMG---FERSQIEAAMRAAFNNPDRAVEYLLNGIPENIQQEQHARQAAA--AGPT 203
Query: 236 PAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGA-----------------GTLD 278
A A G N DL Q +G+ G LD
Sbjct: 204 QATPAAPAAQEGGEDDG-GVNLFDLAAQAGGGGRGGSGSGSAAAAAAGATQGGADLGNLD 262
Query: 279 FLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEG 338
FLR++ QFQ LR +VQ PQ+L+P+LQ+LG NP L +LI + FL L+ E +
Sbjct: 263 FLRHNPQFQQLRQVVQQQPQMLEPILQQLGAGNPQLAQLIAANPDQFLSLLGESAD---- 318
Query: 339 NVLGQLASAMP-----QAVTVTPEEREAIE 363
+P QA++VT EER+AIE
Sbjct: 319 -------DDVPLPPGAQAISVTEEERDAIE 341
>gi|428673091|gb|EKX74004.1| uv excision repair protein rad23, putative [Babesia equi]
Length = 317
Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 94/336 (27%), Positives = 139/336 (41%), Gaps = 101/336 (30%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLK E++V+ V V + IE + + PA Q LIH GK+LK ++
Sbjct: 1 MKLTVKTLKNVQVEVQVQETSTVEAVMEQIEQLLPN--MPAKTQKLIHSGKILKREMQIK 58
Query: 61 EN-KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTV 119
+ + + V+V+ +K
Sbjct: 59 DYPDIKDGDKVIVIASKV------------------------------------------ 76
Query: 120 APPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQI 179
V SAP P A P P AP S VY +S L+ G L+ V +I
Sbjct: 77 -----VESSAPQPVAKVEEKTPESTPVQQEAPEKS-EPVYDNPSSKLLIGQELQDNVNRI 130
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG-IPEQTAVPPVARASAGGQAGNPPAQ 238
+MG ++R V RA+ AA+NNPERAVE+L +G IPE
Sbjct: 131 CEMG---FERAMVERAMAAAFNNPERAVEFLSTGHIPE---------------------- 165
Query: 239 TQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNA-----GAGTLDFLRNSQQFQALRTMV 293
P A +D LP+M + + L++ F+ LR +V
Sbjct: 166 --------------PEAMGMD-----LPSMEHSGDMPRTNEDVIQMLQSHPMFEQLRQVV 206
Query: 294 QANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLI 329
Q++PQ+LQ +L +G+ NP L++ I EHQ +F+ LI
Sbjct: 207 QSDPQMLQQLLDNIGRNNPELLQSIIEHQDEFMDLI 242
>gi|190346878|gb|EDK39064.2| hypothetical protein PGUG_03162 [Meyerozyma guilliermondii ATCC
6260]
Length = 368
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 92/308 (29%), Positives = 145/308 (47%), Gaps = 40/308 (12%)
Query: 27 KKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSSSGAST 86
K+ + QG + A Q L++ GKVL+D T+ ++KV E ++ M+ K K S
Sbjct: 17 KQKLAAEQGCE---AEQLKLVYSGKVLQDDKTITDSKVKEGDSIIFMVAKKKPVSD---- 69
Query: 87 VSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPAPAPAPA 146
A P + T+ A + T+ T S + A S + + + + +
Sbjct: 70 --AKPETKTSETAGAGKSETKATEASTSTAGN-------ETSTSGNSGTSNTSGVSGSGS 120
Query: 147 PAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERA 206
+ A S D +G EA++Q I++MG ++R V ALRA++NNP RA
Sbjct: 121 GSGAVTSGGGD--------FASGDEREASIQNIMEMG---YERTQVEAALRASFNNPHRA 169
Query: 207 VEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFP---- 262
VEYL +GIPE P ++ A+A G P A ++A A T G +LF
Sbjct: 170 VEYLLTGIPESLQRPQISNAAASGAVSAPSAVSEADTSADADNTEGAE----NLFEAAAA 225
Query: 263 ---QGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQ 319
QG G+ +GA + Q + LRT +Q NP+++QP+L++L NP + LIQ
Sbjct: 226 AAQQG--ESGAGSGAAGGADQGDDAQLRLLRTALQTNPELIQPLLEQLAASNPQVATLIQ 283
Query: 320 EHQTDFLR 327
+ F+R
Sbjct: 284 QDPEAFVR 291
>gi|50309879|ref|XP_454953.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49644088|emb|CAH00040.1| KLLA0E22133p [Kluyveromyces lactis]
Length = 383
Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 114/403 (28%), Positives = 167/403 (41%), Gaps = 98/403 (24%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + K K IE+ + +S K+ I + D ASQ LI+ GK+L+D T+
Sbjct: 1 MLINFKDFKKEKLPIELADDATISHAKELIAEQKQCD---ASQIKLIYAGKILQDPKTVS 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ E V+ M++K+K + T S ++ P +Q T +++T
Sbjct: 58 GCNLKEGDQVIFMISKTKKKADVKVTES----------TTEPQDESQATASAET------ 101
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
+A A APA A + + G ++ V GS TV +I+
Sbjct: 102 ------------SAVANAPAEATTTGTRTGTTAVTQE-EGTTDASFVTGSQRNETVNRIM 148
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
+MG +DRE V RALRAA+NNP+RAVEYL GIPE + P+Q Q
Sbjct: 149 EMG---YDREQVERALRAAFNNPDRAVEYLLMGIPE----------------ASEPSQQQ 189
Query: 241 AQQPAAPAPTSGPNANPL--------------DLFPQGLPNMG-----SNAG-----AGT 276
A+ A +G NAN +LF Q N G S AG GT
Sbjct: 190 AE---AVTSEAGANANSEVATDVPSQFTEHEDNLFAQAEANNGEQGHESAAGLGGEEMGT 246
Query: 277 LDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPV--- 333
+ + LR +V P+ L P+ + L + PHL + + F+ L+ E V
Sbjct: 247 IGL--TMEDITQLRDVVSGRPEALMPLFESLSTRYPHLRETMLQDPQRFISLLLEAVGGS 304
Query: 334 --------------EGGEGNVLGQLASAMPQAVTVTPEEREAI 362
EG G+ GQ A P VT++ E+ EAI
Sbjct: 305 LTDSLGENLGDDIAEGDLGDFGGQTQGAPPN-VTISAEDEEAI 346
>gi|354546648|emb|CCE43380.1| hypothetical protein CPAR2_210250 [Candida parapsilosis]
Length = 399
Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 84/238 (35%), Positives = 116/238 (48%), Gaps = 33/238 (13%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++ K K I+V+ D VS K+ + + D P SQ L++ GKVL+D TLE
Sbjct: 1 MQIIFKDFKKQTIPIDVELNDSVSSAKEKL--AKEKDCTP-SQIKLVYSGKVLQDDKTLE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E K+ E + ++ M++K+K + + A S A A + S+ T +P ++ PTV
Sbjct: 58 ECKLKEGASIIFMISKAKETPTPAPVSSTPAAEAAASASTGDSTKVEPAGST----PTV- 112
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
PAAP A AP S S GS E T+Q I+
Sbjct: 113 -----------PAAPTSGAATNIEGESAPTETSE---------STFALGSERETTIQNIM 152
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP--PVARASAGGQAGNPP 236
+MG ++R V ALRAA+NNP RAVEYL SGIPE P PVA A+ G +G P
Sbjct: 153 EMG---YERPQVEAALRAAFNNPHRAVEYLISGIPESLQRPSAPVASAATGSGSGAAP 207
>gi|402224231|gb|EJU04294.1| UV excision repair protein Rad23 [Dacryopinax sp. DJM-731 SS1]
Length = 411
Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 75/218 (34%), Positives = 113/218 (51%), Gaps = 27/218 (12%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ KTL+ F ++ +P D V D+K I Q +P QQ +I+ GK+L D T+E
Sbjct: 1 MKLTFKTLQQKQFTLDAEPSDTVLDLKHRISQDQD---FPVEQQKIIYSGKILSDTQTVE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPT-TTSQTPAPTV 119
K+ E F+VVM++K K AAPA A T+ +A P +P +TS + P+
Sbjct: 58 ACKIKEKDFLVVMVSKPK----------AAPA--ATTSKTATPEPAKPVASTSSSAVPSE 105
Query: 120 APPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQI 179
+ P A A A ++ + +G S G+ L+ V+ +
Sbjct: 106 P-------AVVPAPAEPVAAPAPVPAATEQPAAAAAAPAWGD-QSAFFTGAALQGAVENM 157
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQ 217
++MG ++R V+RAL+AAYNNP+RAVEYL SGIP+
Sbjct: 158 MEMG---FERAQVMRALKAAYNNPDRAVEYLMSGIPDH 192
>gi|403221228|dbj|BAM39361.1| DNA repair protein [Theileria orientalis strain Shintoku]
Length = 323
Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 109/369 (29%), Positives = 168/369 (45%), Gaps = 91/369 (24%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + VKTLK E+EV V D+ K +E + + A+ Q LIH GK+LK L
Sbjct: 1 MNLKVKTLKNVEVEVEVAESATVEDLMKRVEELLPN--MQANSQKLIHAGKILKRELLLS 58
Query: 61 EN-KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTV 119
+ + E ++V+ S T SA PA ++SA T + T ++
Sbjct: 59 DYPDIKEGDKIIVI--------SSKKTESAKPAEPKLDSTSAVATPPKVETATENS---- 106
Query: 120 APPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQI 179
Q++P +A P + +P+ S LV GS L+ + +I
Sbjct: 107 ---QNLPRTATPNVSQESHQSPS---------------------SRLVMGSELDQNINRI 142
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 239
+MG +DR +V RA+ AA+NNPERAVE+L +G +P V + G Q N PA+
Sbjct: 143 CEMG---FDRASVERAMAAAFNNPERAVEFLSTG-----NIPSVNLENPGTQ--NTPAE- 191
Query: 240 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQI 299
QA+ NA D+F L++ F+ +R VQ++PQ+
Sbjct: 192 QAE-----------NAGGEDVFR----------------MLQSHPMFEQIRQAVQSDPQL 224
Query: 300 LQPMLQELGKQNPHLMRLIQEHQTDFLRLIN-----EPVEGGEGNVLGQLASAMPQAVTV 354
LQ +L+ +G+ NP L++ I + Q +F+ LIN +P E N P V++
Sbjct: 225 LQQILENIGQTNPELLQTIIQRQDEFMDLINSGAEVDPYSNPETN---------PNIVSL 275
Query: 355 TPEEREAIE 363
T E E+IE
Sbjct: 276 TQVEMESIE 284
>gi|330912967|ref|XP_003296143.1| hypothetical protein PTT_04968 [Pyrenophora teres f. teres 0-1]
gi|311331971|gb|EFQ95765.1| hypothetical protein PTT_04968 [Pyrenophora teres f. teres 0-1]
Length = 384
Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 127/389 (32%), Positives = 186/389 (47%), Gaps = 71/389 (18%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ K LK F IE +P + + +K I+ +G +V +QQ LI+ GK+L+D T+E
Sbjct: 1 MKITFKDLKQNKFVIEAEPSETIGALKAKIQADKGWEV---TQQKLIYSGKILQDANTVE 57
Query: 61 ENKVAENSF--VVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPT 118
+ E F +V K+ +++ AS+ A P+ TPAP
Sbjct: 58 SYNIEEKGFIVCMVSKPKAAPAAAAASSSRAVPS---------------------TPAPV 96
Query: 119 VAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQ 178
A ++ P+APAP+ P APA + S S L G EA +
Sbjct: 97 AA------QTPAAPSAPAPSSNPQNAPATPSPAPAQASGERFNDPSALTMGGEREAAIAN 150
Query: 179 ILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQ 238
+ MG + R + RA+RAA+ NP+RAVEYL +GIPE +A A PA
Sbjct: 151 MESMG---FARADIDRAMRAAFFNPDRAVEYLLTGIPESALQEQAQQAQARAPTSPTPAG 207
Query: 239 TQAQQPAAPAPTSGPNA--NPLDLF-----------PQGLPNMGSNAGA--------GTL 277
A AP + P+ P++LF P G GS GA +L
Sbjct: 208 NTG---ATAAPANAPSGADEPMNLFEAAAQAANRDRPSGGQRGGSAPGATGGGALNANSL 264
Query: 278 DFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGE 337
DFLRN+ QFQ LR +VQ PQ+L+P+LQ++G NP L ++I ++ FL+L+ E +
Sbjct: 265 DFLRNNPQFQQLRQVVQQQPQMLEPILQQVGAGNPQLAQMIAQNPEQFLQLLAEDADED- 323
Query: 338 GNVLGQLASAMP---QAVTVTPEEREAIE 363
+ +P QA++VT +EREAIE
Sbjct: 324 --------APLPPGAQAISVTEDEREAIE 344
>gi|367007439|ref|XP_003688449.1| hypothetical protein TPHA_0O00440 [Tetrapisispora phaffii CBS 4417]
gi|357526758|emb|CCE66015.1| hypothetical protein TPHA_0O00440 [Tetrapisispora phaffii CBS 4417]
Length = 369
Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 97/346 (28%), Positives = 146/346 (42%), Gaps = 60/346 (17%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+ + K K +++ V KK + + D SQ LI+ GKVL+D ++E
Sbjct: 2 VSILFKDFKKQKISLDLPASSTVLHAKKQLAEQKECD---DSQIKLIYSGKVLQDSNSIE 58
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ + V+ M++K K STV+ T+PT + + AP VA
Sbjct: 59 GCGLKDGDQVIFMISKKK------STVTQV---------------TEPTESKEVAAPEVA 97
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
V ES A APA + PV++ +D V GS V +I+
Sbjct: 98 ASAPVAESTET----ATEAAPAHSTTEGQQPVTASND------PGFVVGSQRNEAVDRIM 147
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
+MG ++RE V RALRAA+NNP+RAVEYL GIP+ +
Sbjct: 148 EMG---YEREEVERALRAAFNNPDRAVEYLLMGIPDHLQQQQQQPQVT----------QE 194
Query: 241 AQQPAAP----APTSGP--NANPLDLFPQGLPNMGSNAGAGTL-------DFLRNSQQFQ 287
AQ+P + A T+G + N DLF Q N ++ G +
Sbjct: 195 AQEPTSGSTEVAQTAGEQGDINEDDLFAQAAQNNATDGSTGASAAGSQPGSIGLTMEDLL 254
Query: 288 ALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPV 333
ALR +V NP+ L P+L+ L + P L I + F+ ++ E V
Sbjct: 255 ALRQIVAGNPEALGPLLENLSTRYPQLREQILSNPEVFVSMLLEAV 300
>gi|90078929|dbj|BAE89144.1| unnamed protein product [Macaca fascicularis]
Length = 217
Score = 101 bits (251), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 72/203 (35%), Positives = 106/203 (52%), Gaps = 38/203 (18%)
Query: 175 TVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP---EQTAV--PPVARASAG 229
V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP E AV PP A ++
Sbjct: 1 MVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAVVDPPQAASTGA 57
Query: 230 GQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQAL 289
Q+ A +SG G P L+FLRN QFQ +
Sbjct: 58 PQSSAVAAAAATTTATTTTTSSG-----------GHP----------LEFLRNQPQFQQM 96
Query: 290 RTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG---------EGNV 340
R ++Q NP +L +LQ++G++NP L++ I +HQ F++++NEPV+
Sbjct: 97 RQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQGGGGGGGSGG 156
Query: 341 LGQLASAMPQAVTVTPEEREAIE 363
+ + S + VTP+E+EAIE
Sbjct: 157 IAEAGSGHMNYIQVTPQEKEAIE 179
>gi|448512641|ref|XP_003866779.1| Rad23 protein [Candida orthopsilosis Co 90-125]
gi|380351117|emb|CCG21340.1| Rad23 protein [Candida orthopsilosis Co 90-125]
Length = 402
Score = 101 bits (251), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 81/216 (37%), Positives = 108/216 (50%), Gaps = 26/216 (12%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ K K IEV+ D VS K + Q D +SQ L++ GKVL+D TLE
Sbjct: 1 MKIIFKDFKKQTIPIEVELTDTVSSAKDKL--AQEKDCV-SSQIKLVYSGKVLQDDKTLE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E K+ E + ++ M++K+K T + P SS P +T+ T ++ T T
Sbjct: 58 ECKLKEGASIIFMISKAK------ETPTPVPG------SSVP--ATEATASASTGDSTKV 103
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P + P APAPA A A A SS + S GS E T+Q I+
Sbjct: 104 EP-----AGSTPTAPAPASETATNAEGATASTSSTGPAE-TSESTFALGSERETTIQNIM 157
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE 216
+MG ++R V ALRAA+NNP RAVEYL SGIPE
Sbjct: 158 EMG---YERPQVEAALRAAFNNPHRAVEYLISGIPE 190
>gi|146418936|ref|XP_001485433.1| hypothetical protein PGUG_03162 [Meyerozyma guilliermondii ATCC
6260]
Length = 368
Score = 100 bits (250), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 92/308 (29%), Positives = 144/308 (46%), Gaps = 40/308 (12%)
Query: 27 KKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSSSGAST 86
K+ + QG + A Q L++ GKVL+D T+ ++KV E ++ M+ K K S
Sbjct: 17 KQKLAAEQGCE---AEQLKLVYSGKVLQDDKTITDSKVKEGDSIIFMVAKKKPVSD---- 69
Query: 87 VSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPAPAPAPA 146
A P + T+ A + T+ T S + A S + + + + +
Sbjct: 70 --AKPETKTSETAGAGKSETKATEASTSTAGN-------ETSTSGNSGTSNTSGVSGSGS 120
Query: 147 PAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERA 206
+ A S D G EA++Q I++MG ++R V ALRA++NNP RA
Sbjct: 121 GSGAVTSGGGD--------FALGDEREASIQNIMEMG---YERTQVEAALRASFNNPHRA 169
Query: 207 VEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFP---- 262
VEYL +GIPE P ++ A+A G P A ++A A T G +LF
Sbjct: 170 VEYLLTGIPESLQRPQISNAAASGAVSAPSAVSEADTSADADNTEGAE----NLFEAAAA 225
Query: 263 ---QGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQ 319
QG G+ +GA + Q + LRT +Q NP+++QP+L++L NP + LIQ
Sbjct: 226 AAQQG--ESGAGSGAAGGADQGDDAQLRLLRTALQTNPELIQPLLEQLAASNPQVATLIQ 283
Query: 320 EHQTDFLR 327
+ F+R
Sbjct: 284 QDPEAFVR 291
>gi|349803947|gb|AEQ17446.1| putative rad23b [Hymenochirus curtipes]
Length = 286
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 78/247 (31%), Positives = 118/247 (47%), Gaps = 39/247 (15%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++ +KTL+ F+I++ E+ V +K+ IE +G + +P + Q LI+ GK+L D
Sbjct: 1 MQITLKTLQQQTFKIDIDSEETVKALKEKIELEKGKEAFPVAGQKLIYAGKILND----- 55
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ A + LT + ++ A + PA T S P T+T P +T +P
Sbjct: 56 DTATAAPAPASPPLTYTPIARQNAPVLPTVPAPAVPT--SEPTTTTAPKEEEKTDSP--- 110
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
PE+ P + P+ + P+ ++ A S LV G + E V +I+
Sbjct: 111 -----PETMSPSSTECSVPSDSSRPS-----------LFVDATSALVTGQSYENMVTEIM 154
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
MG ++RE VI ALRA++NNP+RAVEYL GIP GQA P QT
Sbjct: 155 SMG---YEREQVIAALRASFNNPDRAVEYLLVGIP----------GDREGQAVADPPQTL 201
Query: 241 AQQPAAP 247
A P P
Sbjct: 202 ASTPTQP 208
>gi|119498549|ref|XP_001266032.1| UV excision repair protein (RadW), putative [Neosartorya fischeri
NRRL 181]
gi|119414196|gb|EAW24135.1| UV excision repair protein (RadW), putative [Neosartorya fischeri
NRRL 181]
Length = 360
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 112/368 (30%), Positives = 171/368 (46%), Gaps = 79/368 (21%)
Query: 22 KVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSS 81
KV VK+ I +G +V Q LI+ GK+L+D T+E + E F+V M++K K
Sbjct: 6 KVGQVKEKISKEKGWEV---PQLKLIYSGKILQDDKTIETYNIEEKGFIVCMVSKPK--- 59
Query: 82 SGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPAP 141
AP ++ P+ TP+ A + P + P AAP+ P
Sbjct: 60 -------------------APSSAATPSQAPSTPSRAAASTPAAPSAPAPSAAPSAPAVP 100
Query: 142 APAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYN 201
A APA + + S L++GS EA + Q+ MG + R + RA+RAA+
Sbjct: 101 ATPSPAAPAQAPADASAAFNDPSALLSGSQSEAVISQMESMG---FPRSDINRAMRAAFF 157
Query: 202 NPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLF 261
NP+RA+EYL +GIP+ + + A + AP+S P++LF
Sbjct: 158 NPDRAIEYLLNGIPDN-----IQQEQQQQAAAAAAPPAPSAPSGESAPSSTGGDEPVNLF 212
Query: 262 P-----------------------QGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQ 298
+GLPN LDFLRN+ FQ LR +VQ PQ
Sbjct: 213 EAAAQAGTGEGTGRGARAGAAGAGEGLPN---------LDFLRNNPHFQQLRQLVQQQPQ 263
Query: 299 ILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMP---QAVTVT 355
+L+P+LQ++ NP + +LI +++ FL+L++E +G A+P A++VT
Sbjct: 264 MLEPILQQVAAGNPQIAQLIGQNEEQFLQLLSEEDDG-----------ALPPGTHAISVT 312
Query: 356 PEEREAIE 363
EER+AIE
Sbjct: 313 EEERDAIE 320
>gi|50292795|ref|XP_448830.1| hypothetical protein [Candida glabrata CBS 138]
gi|49528143|emb|CAG61800.1| unnamed protein product [Candida glabrata]
Length = 392
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 113/399 (28%), Positives = 172/399 (43%), Gaps = 82/399 (20%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+ V K K + ++++ + VK+ + D SQ LI GKVLKD ++E
Sbjct: 2 VSVTFKNFKKEKYPLDLESSQSIVAVKEALSEKLSCD---PSQIKLIFSGKVLKDGDSVE 58
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTT--SSAPPTSTQPTTTSQTPAPT 118
+ + V+ M++ K +++ T S+AP Q++ T S P TSTQP T
Sbjct: 59 SCNFKDGNEVIFMVSAKKATATKV-TESSAPKAQSEETPSESTPATSTQPETNQNETTE- 116
Query: 119 VAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQ 178
PA + AP + D + V GS AT+++
Sbjct: 117 --------------------PATNSSSENTEAPNAGTDDGF-------VVGSERNATIER 149
Query: 179 ILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQ 238
I++MG ++R V RALRAA+NNP+RAVEYL GIPE T P Q G +
Sbjct: 150 IMEMG---YERAEVERALRAAFNNPDRAVEYLLMGIPE-TLRP---------QEGQTSQE 196
Query: 239 TQAQQPAAPAPTSGPNANP---LDLFPQ-----GLPNMGSNAGAGTLDFLRNS------- 283
+A ++ NA P DLF Q P+ AG T + ++
Sbjct: 197 HEADVDMNEEESTEGNAEPPAEDDLFAQAARDSATPSAAQTAGGTTSESAGSATGGPPGS 256
Query: 284 -----QQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPV----E 334
+ ALR +V NP+ L P+L+ L + P L I + F+ ++ E V +
Sbjct: 257 IGLTMEDLLALRQVVSGNPEALAPLLENLSNRYPQLREQIMANPEVFVSMLLEAVGDNLQ 316
Query: 335 G---------GEGN-VLGQLASAMPQA-VTVTPEEREAI 362
G GEG+ V G A A +T++PE+ +AI
Sbjct: 317 GAMDFEAIAEGEGDTVEGADGFAEENAPITLSPEDEQAI 355
>gi|358398611|gb|EHK47962.1| hypothetical protein TRIATDRAFT_298203 [Trichoderma atroviride IMI
206040]
Length = 367
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 122/376 (32%), Positives = 172/376 (45%), Gaps = 64/376 (17%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV + LK F ++V+P D++S VK+ I +G + Q LI+ GK+LKD T++
Sbjct: 1 MKVTFRDLKQQKFVLDVEPTDQISAVKEKIAAEKG---WEPKTQKLIYSGKILKDDDTVQ 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ E FVV M+ K P + AP
Sbjct: 58 SYNIEEKGFVVCMVNK--------------------------PRPAAAAAPAAAAAPPAT 91
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEA-TVQQI 179
P Q VP + PA P PAP+ + AP P + + ++ S V+G + A + I
Sbjct: 92 PAQRVPST---PAVP---PAPSQTSSQAPPPATPTPNRSVESPSGGVSGLAMGAERAEAI 145
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 239
+M ++R + A+RAA+NNP+RAVEYL +GIPE RAS
Sbjct: 146 ANMEAMGFERTQIEAAMRAAFNNPDRAVEYLLTGIPENIQQEQQQRASQ-------QQAA 198
Query: 240 QAQQPAAPAPTSGPNANPLDLFPQ---------GLPNMGSNAGAGTLDFLRNSQQFQALR 290
A AAPA N DL Q G LDFLR++ QFQ LR
Sbjct: 199 AAAPTAAPAADDDGGVNLFDLAAQRRGGGASDAPAAAGAGQGDLGNLDFLRHNAQFQQLR 258
Query: 291 TMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMP- 349
+VQ PQ+L+P+LQ+LG NP L +LI + FL+L+ E + +P
Sbjct: 259 QVVQQQPQMLEPILQQLGAGNPQLAQLIASNPDQFLQLLGEDADDD---------VPLPP 309
Query: 350 --QAVTVTPEEREAIE 363
QA++VT EER+AIE
Sbjct: 310 GAQAISVTEEERDAIE 325
>gi|24638593|ref|NP_726561.1| Rad23, isoform B [Drosophila melanogaster]
gi|22759400|gb|AAN06526.1| Rad23, isoform B [Drosophila melanogaster]
Length = 343
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 97/175 (55%), Gaps = 23/175 (13%)
Query: 160 GQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTA 219
+A SNL+ G TV +++MG + RE V RA+ A+YNNPERAVEYL +GIP +
Sbjct: 76 SRAESNLLMGDEYNQTVLSMVEMG---YPREQVERAMAASYNNPERAVEYLINGIPAEEG 132
Query: 220 VPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDF 279
+ ++ NP + P+ P P S +A + + + +F
Sbjct: 133 T----FYNRLNESTNP-----SLIPSGPQPASATSAE-----------RSTESNSDPFEF 172
Query: 280 LRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVE 334
LR+ QF +R+++ NP +L +LQ++G+ NP L++LI E+Q FL ++N+P++
Sbjct: 173 LRSQPQFLQMRSLIYQNPHLLHAVLQQIGQTNPALLQLISENQDAFLNMLNQPID 227
>gi|242015323|ref|XP_002428309.1| UV excision repair protein rhp23, putative [Pediculus humanus
corporis]
gi|212512899|gb|EEB15571.1| UV excision repair protein rhp23, putative [Pediculus humanus
corporis]
Length = 156
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 70/190 (36%), Positives = 95/190 (50%), Gaps = 39/190 (20%)
Query: 26 VKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSSSGAS 85
+K+ IE +G D YPA Q LI+ GK+L D T L E K+ E F+VVM+TK K+
Sbjct: 4 LKEKIEAEKGKD-YPAVNQRLIYAGKILTDETPLSEYKIDEKKFIVVMVTKPKL------ 56
Query: 86 TVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPAPAPAP 145
PA A ++ S P T QT T P
Sbjct: 57 ----PPATHAGSSDSTPTPGTGDGGEKQTSDTTSNEP----------------------- 89
Query: 146 APAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPER 205
PA V+S + +GQA S L+ G +++ I+DMG + +E V RALRA++NNP+R
Sbjct: 90 -PASENVNSGAS-FGQAESALLMGDEYNQSLRNIMDMG---YPKEQVERALRASFNNPDR 144
Query: 206 AVEYLYSGIP 215
AVEYL +GIP
Sbjct: 145 AVEYLLNGIP 154
>gi|440796341|gb|ELR17450.1| Rad23, putative [Acanthamoeba castellanii str. Neff]
Length = 393
Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 88/216 (40%), Positives = 126/216 (58%), Gaps = 8/216 (3%)
Query: 153 SSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYS 212
SS + +AAS LV GS+ EA V I++MG + RE V+RALRA++NNP RAVEYL +
Sbjct: 121 SSGGSIESEAASALVTGSDFEAMVSNIMEMG---FPREEVLRALRASFNNPNRAVEYLMT 177
Query: 213 GIPEQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPN--MGS 270
GIP+ A P + A+ A + A+ + PA P L MG
Sbjct: 178 GIPDMPAQAPASPAAERAAAPAAGGEGAAEPGSPPAAGGEGAGEGGISLPSNLLGALMGQ 237
Query: 271 NAGAG-TLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLI 329
GAG ++LR QF ++ MVQ NPQ+L P+LQ+LG+ NP ++++I +HQ +F+ L+
Sbjct: 238 QGGAGGHFEWLRQHPQFNQIKAMVQRNPQLLGPLLQQLGQLNPQILQMIGQHQAEFMALL 297
Query: 330 NEPVEGGEGNVLGQLASAMPQA--VTVTPEEREAIE 363
NEP++GG G G A P + + VT EE+EAI+
Sbjct: 298 NEPIQGGAGGAPGGPGGAPPGSNYIQVTQEEKEAID 333
>gi|212535726|ref|XP_002148019.1| UV excision repair protein (RadW), putative [Talaromyces marneffei
ATCC 18224]
gi|210070418|gb|EEA24508.1| UV excision repair protein (RadW), putative [Talaromyces marneffei
ATCC 18224]
Length = 372
Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 120/377 (31%), Positives = 173/377 (45%), Gaps = 59/377 (15%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ + LK F IE +P + V VK+ I +G + ASQQ LI+ GK+L+D T+E
Sbjct: 1 MKLTFRDLKQQKFTIEAEPSETVGQVKEKIAQEKG---WEASQQKLIYSGKILQDANTIE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPA-PTV 119
+ E F +V + ++G + A A A ++ AP Q P+ PT
Sbjct: 58 SYNIEEKGF-IVCMVSKPKPAAGGPSTPARAAPAATPSAPAPAPPASTAAVPQVPSTPTP 116
Query: 120 APPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQI 179
A + S PA P S L G+ EA + Q+
Sbjct: 117 ASSGAAAASGEAPAFNDP--------------------------SALAMGTQGEAVISQM 150
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 239
MG + R + RA+RAA+ NP+RAV+YL +GIPE +A A +P A T
Sbjct: 151 EAMG---FPRADIDRAMRAAFFNPDRAVDYLLNGIPENIEQEHAQARAA---AASPSAAT 204
Query: 240 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGA----------GTLDFLRNSQQFQAL 289
A +P++LF G+ G LDFLRN+ FQ L
Sbjct: 205 TPAAAVAAVAPEATGDDPVNLFEAAAQAGGATGRGAAGAGDAGTLGNLDFLRNNPHFQQL 264
Query: 290 RTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMP 349
R +VQ PQ+L+P+LQ++G NP L +LI ++Q FL+L+ E + G EG +P
Sbjct: 265 RQLVQQQPQMLEPILQQVGAGNPQLAQLIGQNQEQFLQLLAEDL-GDEGE--------LP 315
Query: 350 ---QAVTVTPEEREAIE 363
+ VT EER+AIE
Sbjct: 316 PGAHEIRVTEEERDAIE 332
>gi|4966345|gb|AAD34676.1|AC006341_4 Similar to gb|Y12014 RAD23 protein isoform II from Daucus carota.
This gene is probably cut off. EST gb|AA651284 comes
from this gene [Arabidopsis thaliana]
Length = 113
Score = 97.8 bits (242), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 48/74 (64%), Positives = 59/74 (79%), Gaps = 2/74 (2%)
Query: 292 MVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNV--LGQLASAMP 349
MV +NPQILQPMLQELGKQNP L+RLIQE+Q +FL+L+NEP EG +G+V Q MP
Sbjct: 1 MVNSNPQILQPMLQELGKQNPQLLRLIQENQAEFLQLLNEPYEGSDGDVDIFDQPDQEMP 60
Query: 350 QAVTVTPEEREAIE 363
+V VTPEE+E+IE
Sbjct: 61 HSVNVTPEEQESIE 74
>gi|170092959|ref|XP_001877701.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164647560|gb|EDR11804.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 378
Score = 97.8 bits (242), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 106/373 (28%), Positives = 175/373 (46%), Gaps = 43/373 (11%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ +KT + F+IE+ D ++ +K I+ QG +P + Q +I+ GK+L + T++
Sbjct: 1 MKITIKTTQQKVFQIEIDTSDTIAVLKDKIQESQG---HPTAAQKIIYSGKILSNDKTID 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ E F+V+M++K K + + ++ S+AP + Q +S P P ++S V+
Sbjct: 58 SCGIKEKDFLVLMVSKPKPTPAATASTSSAPQD-VQMDTSPPAPPAAPPSSSTPAPVLVS 116
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
SV + P A PA PA APA +G S ++G L++ + +
Sbjct: 117 DTTSVTQPTTPAATPAATAPPAVAPA------------FGDM-STFLSGEALQSAITNMT 163
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
+MG + R+ V+RA+RA+YNN +RAVEYL +GIP PA
Sbjct: 164 EMG---FPRDQVLRAMRASYNNADRAVEYLMTGIPAHLEAEAAGPTPPTAAPATQPAAAA 220
Query: 241 AQQPAAPAPTSGPNANPLDLF----------PQGLPNMGSNAGAGTLDFLRNSQQFQALR 290
P P P +LF G N L+ LR++ Q Q LR
Sbjct: 221 PISANVPPPN-----QPQNLFQATGGVGPAAAGGAAGAPQNPVHLNLEALRDNPQIQQLR 275
Query: 291 TMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQ 350
+ +PQ+ QP++Q+L QNP + +++ ++ +L+ G L +
Sbjct: 276 QQLADDPQMAQPLIQQLAMQNPAMAQMLAQNPDALAQLL--------GVELDEEVPPGAH 327
Query: 351 AVTVTPEEREAIE 363
V+VT EER+AIE
Sbjct: 328 VVSVTAEERDAIE 340
>gi|321479297|gb|EFX90253.1| hypothetical protein DAPPUDRAFT_299929 [Daphnia pulex]
Length = 381
Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 76/249 (30%), Positives = 110/249 (44%), Gaps = 60/249 (24%)
Query: 153 SSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYS 212
+SVS A S L+ G + VQ I+DMG + R+ V RALRA++NNP+RAVEYL +
Sbjct: 118 ASVSTGLLAAESALIVGDDYNQMVQNIMDMG---YPRDQVERALRASFNNPDRAVEYLLT 174
Query: 213 GIPEQTAV------------PPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDL 260
GIP++ V A G G A + P +PL
Sbjct: 175 GIPDRADVGEGAPGGGGQGPDEAALEFILGGRGQSEAALSMEGEGEEGDELAPGEDPLA- 233
Query: 261 FPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQE 320
FLR+ QF +R +VQ NP +L +LQ++G+ NP L+++I +
Sbjct: 234 ------------------FLRSQPQFAQMRQVVQQNPSLLNAILQQIGQTNPALLQMISQ 275
Query: 321 HQTDFLRLINEPVEGGEGNV----------------------LGQLASA----MPQAVTV 354
+Q F R++ EP G G+ GQ A P + V
Sbjct: 276 NQAAFFRMLTEPSSGTAGSASVTPASGAQPGTGSGRAAESPRQGQEEGAGDYFAPGVIHV 335
Query: 355 TPEEREAIE 363
TP+++EAIE
Sbjct: 336 TPQDKEAIE 344
>gi|240256296|ref|NP_197113.4| uncharacterized protein [Arabidopsis thaliana]
gi|332004862|gb|AED92245.1| uncharacterized protein [Arabidopsis thaliana]
Length = 171
Score = 97.4 bits (241), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 45/76 (59%), Positives = 60/76 (78%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG FEIEVKP D V++VKKNIETV G+ YPA+QQ+LIH+ + L+D TT+E
Sbjct: 1 MKIIVKTLKGIRFEIEVKPNDSVAEVKKNIETVMGASEYPAAQQILIHKREKLRDETTME 60
Query: 61 ENKVAENSFVVVMLTK 76
NKV + S + +++TK
Sbjct: 61 ANKVFDKSVIAIIITK 76
>gi|9755819|emb|CAC01850.1| putative protein [Arabidopsis thaliana]
Length = 142
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 45/76 (59%), Positives = 60/76 (78%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG FEIEVKP D V++VKKNIETV G+ YPA+QQ+LIH+ + L+D TT+E
Sbjct: 1 MKIIVKTLKGIRFEIEVKPNDSVAEVKKNIETVMGASEYPAAQQILIHKREKLRDETTME 60
Query: 61 ENKVAENSFVVVMLTK 76
NKV + S + +++TK
Sbjct: 61 ANKVFDKSVIAIIITK 76
>gi|403418377|emb|CCM05077.1| predicted protein [Fibroporia radiculosa]
Length = 214
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 77/216 (35%), Positives = 121/216 (56%), Gaps = 24/216 (11%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTL+ F+I+ + D V+D+KK I+ QG + Q LI+ GK+L D T+E
Sbjct: 1 MKITVKTLQQKVFQIDAEGSDTVADLKKKIQDNQG---HTIESQKLIYSGKILPDSKTVE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
++ E F+V+M++K K V+ PA A T++S TS+ + PAP
Sbjct: 58 SCEIKEKDFLVLMVSKPK-------NVTNLPA--ASTSTSIAATSSPAPVPAPAPAPQPV 108
Query: 121 PPQSVPESAPPPAAPAPAP---APAPA-PAPAPAPVSSVSDVYGQAASNLVAGSNLEATV 176
SAP PA P PA A P AP + +D +++ + G L++T+
Sbjct: 109 SEPPSVPSAPSPAPQPPNAPILTPAQAQPIAAPTTEQAFND-----SNSFLTGEALQSTI 163
Query: 177 QQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYS 212
Q +++MG ++R+ V+RALRA++NNP+RAVEYL++
Sbjct: 164 QNMMEMG---FERDQVMRALRASFNNPDRAVEYLFN 196
>gi|365761179|gb|EHN02849.1| Rad23p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 397
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 109/400 (27%), Positives = 168/400 (42%), Gaps = 87/400 (21%)
Query: 5 VKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKV 64
K K ++++P + + + K + S SQ LI+ GKVL+D T+ E +
Sbjct: 6 FKNFKKEKVPLDLEPSNTIFEAKTKLAQ---STSCEESQIKLIYSGKVLQDSKTVSECGL 62
Query: 65 AENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQS 124
+ VV M+++ K + + + AAP A T + P++ Q T
Sbjct: 63 KDGDQVVFMISQKKSTKTKVTEPPAAPET-ATTVPAGEPSTEQATA-------------- 107
Query: 125 VPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILDMGG 184
SA P APA A P P S+ V + V G+ T+++I++MG
Sbjct: 108 ---SADAPTAPA-----AEELQPQEEPNSNTEQVESVSTPGFVVGTQRNETIERIMEMG- 158
Query: 185 GSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQ-TQAQQ 243
+ RE V RALRAA+NNP+RAVEYL GIPE PP + A PP T A+Q
Sbjct: 159 --YPREEVERALRAAFNNPDRAVEYLLMGIPENLR-PPEQQQQAVAPTEQPPTTATTAEQ 215
Query: 244 PAAPAPTSGPNANPLDLFPQGLPNMGSNAGA------------------GTLDFLRNSQQ 285
PA DLF Q G N + G++ +
Sbjct: 216 PAED-----------DLFAQAA--QGGNTSSGALGSAGGAADAAQGGPPGSIGL--TVED 260
Query: 286 FQALRTMVQANPQILQPMLQELGKQNPH---------------LMRLIQEHQTDFLRLIN 330
+LR +V NP+ L P+L+ + + P L+ + ++ D + +
Sbjct: 261 LLSLRQVVSGNPEALAPLLENISARYPQLREHIMANPEVFVSMLLEAVGDNMQDVMEGAD 320
Query: 331 EPVEGGEGNVLGQLASAMPQ--------AVTVTPEEREAI 362
+ VEG + V G+ A+A P+ V TPE+ +AI
Sbjct: 321 DMVEGEDIEVAGEGAAAGPEQAEGEGSFQVDYTPEDDQAI 360
>gi|401626135|gb|EJS44097.1| rad23p [Saccharomyces arboricola H-6]
Length = 401
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 99/348 (28%), Positives = 155/348 (44%), Gaps = 60/348 (17%)
Query: 5 VKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKV 64
K K ++++P + + + K + + SQ LI+ GKVL+D T+ E +
Sbjct: 6 FKNFKKEKVPLDLEPSNTIFEAKTKLAQTASCE---ESQIKLIYSGKVLQDSKTVSECGL 62
Query: 65 AENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQS 124
+ VV M+++ + + + + AP A TT+ ST+P +TS T APT A +
Sbjct: 63 KDGDQVVFMISQKRSTKTKVTEPPIAPETAA-TTNPVRDDSTEPASTS-TDAPT-AETST 119
Query: 125 VPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAAS-NLVAGSNLEATVQQILDMG 183
E + P PA G A++ V G+ T+++I++MG
Sbjct: 120 AAEGSQPQEEQTSTTEPA-----------------GSASTPGFVVGTQRNETIERIMEMG 162
Query: 184 GGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQA-- 241
+ RE V RALRAA+NNP+RAVEYL GIPE P +P Q A
Sbjct: 163 ---YPREEVERALRAAFNNPDRAVEYLLMGIPENLRQP------------DPQQQAVAAN 207
Query: 242 QQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNS----------------QQ 285
+QPA A T+ A DLF Q G N +G L + ++ +
Sbjct: 208 EQPATAATTTEQPAED-DLFAQAA--QGGNTSSGALGSVGSAADAAQGGPPGSIGLTVED 264
Query: 286 FQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPV 333
+LR +V NP+ L P+L+ + + P L I + F+ ++ E V
Sbjct: 265 LLSLRQVVSGNPEALAPLLENISARYPQLREHIMANPEVFVSMLLEAV 312
>gi|167999117|ref|XP_001752264.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162696659|gb|EDQ82997.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 114
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 52/74 (70%), Positives = 57/74 (77%), Gaps = 2/74 (2%)
Query: 292 MVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLIN--EPVEGGEGNVLGQLASAMP 349
MVQANPQILQPMLQELGKQNP L+RLI E+Q +FLRLIN G+ LGQLA P
Sbjct: 1 MVQANPQILQPMLQELGKQNPALLRLINENQAEFLRLINEAGAEGAEGGDALGQLAGGYP 60
Query: 350 QAVTVTPEEREAIE 363
Q+V VTPEEREAIE
Sbjct: 61 QSVNVTPEEREAIE 74
>gi|72390575|ref|XP_845582.1| UV excision repair RAD23 protein [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
gi|62358793|gb|AAX79246.1| UV excision repair RAD23 protein, putative [Trypanosoma brucei]
gi|70802117|gb|AAZ12023.1| UV excision repair RAD23 protein, putative [Trypanosoma brucei
brucei strain 927/4 GUTat10.1]
gi|261328991|emb|CBH11969.1| UV excision repair RAD23 protein, putative [Trypanosoma brucei
gambiense DAL972]
Length = 356
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 102/337 (30%), Positives = 151/337 (44%), Gaps = 67/337 (19%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++ +K++ G E EV P+ KV D+KK +E S+ P S + L + +VL+D T+E
Sbjct: 1 MRIILKSVLGKKREHEVSPDTKVEDIKKFLE----SEYTPQSLR-LCYNNRVLEDPMTME 55
Query: 61 ENKVAENSFVVVMLTKSKV----SSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPA 116
+ + E++ +V + K V S SG +APA P
Sbjct: 56 QLGIGEDTVIVYVGKKQSVQQLASKSGGCASPSAPAE-------------GPAKGELNEN 102
Query: 117 PTVAPPQSVPESAPPPAAPAPAPAPAPAPA-PAPAPVSSVSDVYGQAASNLVAGSNLEAT 175
P VA SVP P P+ A APA P+ PAPA + SV A
Sbjct: 103 PGVAGASSVPVDVPAPSPSAQAPATTQQPSGPAPASLRSVD----------------PAL 146
Query: 176 VQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP---EQTAVPPVARASAGGQA 232
+ I+ MG DRE V ALRAAY N +RAVE+L +GIP +Q +ASA G+A
Sbjct: 147 IDSIVAMGFN--DREQVSLALRAAYMNADRAVEFLCTGIPPHVQQQLAEADLQASAMGRA 204
Query: 233 GNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTM 292
P A T P + A + G ++ L +P++ DF R++
Sbjct: 205 AVPSAGT----PPSDAGSGGTQSD-LRRALSAIPHID--------DF----------RSL 241
Query: 293 VQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLI 329
+Q NPQ + +L + P + L Q+ +F R +
Sbjct: 242 LQNNPQAFSALAGQLLENFPQVGELAQQDPEEFARFM 278
>gi|365991864|ref|XP_003672760.1| hypothetical protein NDAI_0L00320 [Naumovozyma dairenensis CBS 421]
gi|410729747|ref|XP_003671052.2| hypothetical protein NDAI_0G00330 [Naumovozyma dairenensis CBS 421]
gi|401779871|emb|CCD25809.2| hypothetical protein NDAI_0G00330 [Naumovozyma dairenensis CBS 421]
Length = 427
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 117/410 (28%), Positives = 178/410 (43%), Gaps = 69/410 (16%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+ V K K ++++P + + DVK + + + SQ +I+ GKVL+D T+E
Sbjct: 2 VNVIFKDFKKEKIPLDLEPSNTILDVKSQLAQAKACE---ESQIKIIYSGKVLQDGQTVE 58
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQP--TTTSQTPAPT 118
E ++ E ++ M++K K STV+ A + A P TT S + P
Sbjct: 59 ECQLKEGDQIIFMISKKK------STVTKVTEPPAAAAAQAQAPGANPEITTASNSATPG 112
Query: 119 V---APPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDV-YGQAASNLVAGSNLEA 174
+ A PE P A A A A AP ++ + +++ V G+
Sbjct: 113 LIETAAASGTPEGTPQTGNDTTASASANTATDAGAPATTTAATELSPSSAGFVTGTQRNE 172
Query: 175 TVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGN 234
TV++I++MG ++RE V RALRAA+NNP+RAVEYL GIPE + QA
Sbjct: 173 TVERIMEMG---YEREEVERALRAAFNNPDRAVEYLLMGIPENLQQQHQQQQQQPTQA-- 227
Query: 235 PPAQTQAQQPAAPAPTSGPNANPL------DLF---PQGLPNMGS-------NAGAGT-- 276
Q A + +A A +G +A+ DLF QG N GS + G GT
Sbjct: 228 -SPQNIANEGSATATATGDDAHAEEPPAEDDLFAQAAQGSGNAGSAGSAVGGSTGEGTPG 286
Query: 277 ------LDFLRNSQ------------------QFQALRTMVQANPQILQPMLQELGKQNP 312
D L Q ++ LR + +NPQ ML E N
Sbjct: 287 SIGLTIQDLLSLRQAVSGDPESLSSLLENLSTRYPQLREQIMSNPQTFISMLLEAVGDNL 346
Query: 313 HLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEEREAI 362
+ + + D INE G+ + +G+ ASA P + +TPE+ +AI
Sbjct: 347 QSLEGLGDIGGDLGE-INE----GDNDTMGE-ASAAPPTIQLTPEDEQAI 390
>gi|260945185|ref|XP_002616890.1| hypothetical protein CLUG_02334 [Clavispora lusitaniae ATCC 42720]
gi|238848744|gb|EEQ38208.1| hypothetical protein CLUG_02334 [Clavispora lusitaniae ATCC 42720]
Length = 340
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 101/329 (30%), Positives = 152/329 (46%), Gaps = 61/329 (18%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V K LK ++ V+P D V K+ + + DV P SQ ++ GKVL+D T +
Sbjct: 1 MQVTFKDLKKQTVQVSVEPSDLVRVGKEKVAAAR--DVDP-SQLKFVYSGKVLQDDKTFD 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E KV E ++ M+++ K + + V+A A++A + S P TSTQ
Sbjct: 58 EFKVKEGDSIIFMISQKKSPAPAPAPVAAPAASEAVSAPSEPETSTQ------------- 104
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
PE+A AA A PA S SD + A +Q ++
Sbjct: 105 ----TPETASSTAANASTPA-------------SSSD-FASGQDREAA-------IQNMM 139
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
+MG ++R + RALRAA+NNP RAVEYL +GIPE A +A PP Q
Sbjct: 140 EMG---YERPQIERALRAAFNNPHRAVEYLITGIPE-----------ALTRAEQPP---Q 182
Query: 241 AQ-QPAAPAPTSGPNANPLDLFPQGLPNMG--SNAGAGTLDFLRNSQQFQALRTMVQANP 297
AQ +PAA A + + + NM + A AG + LR +Q+ P
Sbjct: 183 AQEEPAAHAEAQTEHEDESNQEANVHENMFDVAEAAAGDEPVPAQEDRLALLRAAIQSEP 242
Query: 298 QILQPMLQELGKQNPHLMRLIQEHQTDFL 326
+++Q +LQE+ NP +LI++ F+
Sbjct: 243 ELVQSVLQEIAASNPQAAQLIEQDPEAFI 271
>gi|409045113|gb|EKM54594.1| hypothetical protein PHACADRAFT_258558 [Phanerochaete carnosa
HHB-10118-sp]
Length = 415
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 70/215 (32%), Positives = 111/215 (51%), Gaps = 16/215 (7%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTL+ F+++ +P + V+D+KK IE G +P + Q LI+ G+VL D T+E
Sbjct: 1 MKITVKTLQQKTFQLDAEPSETVADLKKKIEEGHG---HPVATQKLIYSGQVLGDDKTVE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ E F+V ++ + + + A A T+++ + PA ++
Sbjct: 58 SCNIKEKGFLV-LMVAKPKAEPKPAAAATPAAAAAATSAAPSNPPAAAPAAAPAPATSIP 116
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P PA A AP P S + + A V G++L+ VQ ++
Sbjct: 117 AAAPPQPPNAPILTPAQA-------APVSTPAQSARAINDENA--FVTGADLQTAVQNMM 167
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 215
+MG ++RE +RALRA+YNNPERAVEYL++GIP
Sbjct: 168 EMG---FEREQAMRALRASYNNPERAVEYLFNGIP 199
>gi|330803429|ref|XP_003289709.1| hypothetical protein DICPUDRAFT_48776 [Dictyostelium purpureum]
gi|325080219|gb|EGC33784.1| hypothetical protein DICPUDRAFT_48776 [Dictyostelium purpureum]
Length = 349
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 94/329 (28%), Positives = 149/329 (45%), Gaps = 50/329 (15%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ +K + + E+ + V D+K +I + + P S Q LI+ GK+L+D TLE
Sbjct: 1 MKLTIKNINKEVYSFELDSDKTVLDLKNSI--FEKYNQIP-SWQTLIYSGKILEDKNTLE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
K++E F+V+M+ K + +T + +++ ++ S T++QP T+ P T
Sbjct: 58 SYKISEQGFIVMMIKKPR---EAPATATTTSPSESTSSPSNSTTTSQPANTTSAPVTTPN 114
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P + P + P + P P+ +P+ +S +D V G+ LE T++ I+
Sbjct: 115 PTPARPTTPNPTPTTSSTPGTTPSSNTSPSQNTSSTD--------FVTGTELENTIKNIV 166
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
DMG + RE VIRALR YNN +RAVE L SG ++P A A +
Sbjct: 167 DMG---FQREQVIRALRLGYNNADRAVELLLSG-----SIPENA-ADDEEEDNMDVGGGG 217
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQIL 300
Q P LRN F LR + +P I+
Sbjct: 218 NDQQGGDNPFEA---------------------------LRNHPYFPMLRQAIAQDPNII 250
Query: 301 QPMLQELGKQNPHLMRLIQEHQTDFLRLI 329
+LQ+L + NP L+R I E DF+R+
Sbjct: 251 PTLLQQLAQSNPELVRQISERPNDFIRIF 279
>gi|401840717|gb|EJT43420.1| RAD23-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 397
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 108/400 (27%), Positives = 167/400 (41%), Gaps = 87/400 (21%)
Query: 5 VKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKV 64
K K ++++P + + + K + S SQ LI+ GKVL+D T+ E +
Sbjct: 6 FKNFKKEKVPLDLEPSNTIFEAKTKLAQ---STSCEESQIKLIYSGKVLQDSKTVSECGL 62
Query: 65 AENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQS 124
+ VV M+++ K + + + AAP A T + P++ Q T
Sbjct: 63 KDGDQVVFMISQKKSTKTKVTEPPAAPET-ATTVPAGEPSTEQATA-------------- 107
Query: 125 VPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILDMGG 184
SA P APA A P P S+ + V G+ T+++I++MG
Sbjct: 108 ---SADAPTAPA-----AEELQPQEEPSSNTEQAESVSTPGFVVGTQRNETIERIMEMG- 158
Query: 185 GSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQ-TQAQQ 243
+ RE V RALRAA+NNP+RAVEYL GIPE PP + A PP T A+Q
Sbjct: 159 --YPREEVERALRAAFNNPDRAVEYLLMGIPENLR-PPEPQQQAVAPTEQPPTTATTAEQ 215
Query: 244 PAAPAPTSGPNANPLDLFPQGLPNMGSNAGA------------------GTLDFLRNSQQ 285
PA DLF Q G N + G++ +
Sbjct: 216 PAED-----------DLFAQAA--QGGNTSSGALGSAGGAADAAQGGPPGSIGL--TVED 260
Query: 286 FQALRTMVQANPQILQPMLQELGKQNPH---------------LMRLIQEHQTDFLRLIN 330
+LR +V NP+ L P+L+ + + P L+ + ++ D + +
Sbjct: 261 LLSLRQVVSGNPEALAPLLENISARYPQLREHIMANPEVFVSMLLEAVGDNMQDVMEGAD 320
Query: 331 EPVEGGEGNVLGQLASAMPQ--------AVTVTPEEREAI 362
+ VEG + V G+ A+A P+ V TPE+ +AI
Sbjct: 321 DMVEGEDIEVAGEGAAAGPEQAEGEGSFQVDYTPEDDQAI 360
>gi|259145863|emb|CAY79123.1| Rad23p [Saccharomyces cerevisiae EC1118]
gi|323349008|gb|EGA83243.1| Rad23p [Saccharomyces cerevisiae Lalvin QA23]
Length = 408
Score = 94.4 bits (233), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 101/362 (27%), Positives = 157/362 (43%), Gaps = 71/362 (19%)
Query: 42 SQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSA 101
SQ LI+ GKVL+D T+ E + + VV M+++ K + +T +
Sbjct: 40 SQIKLIYSGKVLQDSKTVSECGLKDGDQVVFMVSQKKST---------------KTKVTE 84
Query: 102 PPTSTQPTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQ 161
PP + + TT P + A P + APA P + + +
Sbjct: 85 PPIAPESATT---------PGRENSTEASPSTDASAAPAATAPEGSQPQEEQTATTERTE 135
Query: 162 AASN--LVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTA 219
+AS V G+ T+++I++MG + RE V RALRAA+NNP+RAVEYL GIPE
Sbjct: 136 SASTPGFVVGTERNETIERIMEMG---YQREEVERALRAAFNNPDRAVEYLLMGIPENLR 192
Query: 220 VPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDF 279
P + +A A T A+QP+ A T+ A DLF Q G NA +G L
Sbjct: 193 QPEPQQQTAAAAEQPSTAATTAEQPSTAATTAEQPAED-DLFAQAA--QGGNASSGALGT 249
Query: 280 LRNS----------------QQFQALRTMVQANPQILQPMLQELGKQNPH---------- 313
+ + +LR +V NP+ L P+L+ + + P
Sbjct: 250 TGGATDAAQGGPPGSIGLTVEDLLSLRQVVSGNPEALAPLLENISARYPQLREHIMANPE 309
Query: 314 -----LMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASA-MPQA-------VTVTPEERE 360
L+ + ++ D + ++ VEG + V G+ A+A + Q V TPE+ +
Sbjct: 310 VFVSMLLEAVGDNMQDVMEGADDMVEGEDIEVTGEAAAAGLGQGEGEGSFQVDYTPEDDQ 369
Query: 361 AI 362
AI
Sbjct: 370 AI 371
>gi|241950849|ref|XP_002418147.1| UV excision repair protein, putative [Candida dubliniensis CD36]
gi|223641486|emb|CAX43447.1| UV excision repair protein, putative [Candida dubliniensis CD36]
Length = 430
Score = 94.4 bits (233), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 104/381 (27%), Positives = 164/381 (43%), Gaps = 64/381 (16%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++ K K ++V+ D V K+ + +G D +SQ L++ GKVL+D LE
Sbjct: 1 MQIVFKDFKKQTVTLDVELTDSVLSTKEKLAQEKGCD---SSQIKLVYSGKVLQDDKNLE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
K+ E + ++ M+ K+K T + P ++ T S++ +T+++ + + +
Sbjct: 58 SYKLKEGASIIFMINKTK------KTPTPVPETKSTTESTSQEQVQAQGSTNESTSSSTS 111
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASN---LVAGSNLEATVQ 177
+ +A AA A + P QA SN GS EA++Q
Sbjct: 112 STTTTTAAAAAAAAGAASTGTTTTSEQQPE----------QAVSNESTFAVGSEREASIQ 161
Query: 178 QILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE-------QTAVPPVARASAGG 230
I++MG ++R V ALRAA+NNP RAVEYL +GIPE VP + G
Sbjct: 162 NIMEMG---YERPQVEAALRAAFNNPHRAVEYLLTGIPESLQHPTPPVPVPAPVPTAPTG 218
Query: 231 QAGNPPAQTQAQQPAAPAPTSGP-----NANPLDLFPQGL-----PNMGSNAGAGTLDFL 280
Q QQ A G + +LF N G ++ GT +
Sbjct: 219 QQTERNTSETGQQGANEEHGDGDEEGEESTQHENLFEAAAAAAAATNQGDSSIGGTTSGV 278
Query: 281 RNS-----------------QQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQT 323
QQ Q LR +Q+NP+++QP+L++L NP + LI +
Sbjct: 279 GAGAGAGAGGEGDIGGLGDDQQMQLLRAALQSNPELIQPLLEQLAASNPQIASLISQDPE 338
Query: 324 DFLRLINEPVEG--GEGNVLG 342
F+R+ + G G GN LG
Sbjct: 339 AFVRMF---LSGAPGSGNDLG 356
>gi|407851853|gb|EKG05558.1| UV excision repair RAD23-like protein, putative [Trypanosoma cruzi]
Length = 361
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 104/376 (27%), Positives = 164/376 (43%), Gaps = 67/376 (17%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ ++++ G+ EV P+ V VKK +E D Y L + G + ++ T+
Sbjct: 1 MKIILRSIVGSEQVREVTPDTNVETVKKFLE-----DEYNTDSLRLCYNGAIPENSKTMT 55
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTS----------TQPTT 110
E V EN+ ++ K + A ++ P QA+T SS PTS T+P T
Sbjct: 56 ELGVKENAVFIIAGNKRNKNKPQAKPATSLPPPQAKTNSSFEPTSVGHGQGEGAITEPAT 115
Query: 111 TSQTPAPT-VAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAG 169
+ AP + P+ E PPP+ AP+ A ++G +
Sbjct: 116 SGAGGAPGGITEPRQGAE--PPPSEEAPSQGLA---------------LHGVDPT----- 153
Query: 170 SNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAG 229
V I+ MG DRE V ALRAAY NP+RAVE+L +GIP
Sbjct: 154 -----LVDNIIAMG--FEDREQVALALRAAYMNPDRAVEFLCTGIPSDVL---------- 196
Query: 230 GQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQAL 289
Q N PA P+ +S ++ D + ++ + + L QF +
Sbjct: 197 -QRMNEPA-------INPSASSERMSSLTDRLTSHMRQ--DDSDSALYNALMQIPQFGEI 246
Query: 290 RTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMP 349
R++VQANP+ L ++Q+L +P ++ LIQ+ FLR++ P + G P
Sbjct: 247 RSIVQANPESLPTVVQQLRIHHPEVIGLIQQDLEGFLRIMGNPGQTEFTTSTGGGGDVPP 306
Query: 350 QAVTV--TPEEREAIE 363
+V++ EER AI+
Sbjct: 307 DSVSIPLREEERVAIQ 322
>gi|444315840|ref|XP_004178577.1| hypothetical protein TBLA_0B02160 [Tetrapisispora blattae CBS 6284]
gi|387511617|emb|CCH59058.1| hypothetical protein TBLA_0B02160 [Tetrapisispora blattae CBS 6284]
Length = 404
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 91/339 (26%), Positives = 138/339 (40%), Gaps = 47/339 (13%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+ + K K +E+ + + K I + + D+ Q LI+ GK+LK+ T+
Sbjct: 2 VSLIFKDFKKEKIPLELDADSTIESAKGQIASEKNCDI---DQIKLIYSGKILKNDATIL 58
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ + +N ++ M++K K + ASTV P S TT +T A
Sbjct: 59 NSGLKDNDHIIFMISKKKKKTEPASTVKVTE-----------PASV--TTNVETQAE--G 103
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P S P + P PA + A A S+ A V G+ T+Q+I+
Sbjct: 104 TPNSDPSANATPEVPAATTSNAAAGDDTETTTSA-------ADPGFVVGTERNETIQRIM 156
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
+MG + RE V ALRAA+NNP+RAVEYL GIPE +
Sbjct: 157 EMG---YQREEVEAALRAAFNNPDRAVEYLLMGIPEHLQHQQPQQLQQTTIQTEGATSAN 213
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLD------FLRNSQQFQALRTMVQ 294
+ PA DLF Q G+ A + D + ALR +V
Sbjct: 214 MELPAED-----------DLFAQAA--RGNQANQQSTDDTPPGSIGLTMEDLLALRQVVS 260
Query: 295 ANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPV 333
NP+ L P+L+ L + P L I + F+ ++ E V
Sbjct: 261 GNPEALPPLLENLTTRYPQLREQIMANPEVFVSMLLEAV 299
>gi|367049660|ref|XP_003655209.1| hypothetical protein THITE_2118639 [Thielavia terrestris NRRL 8126]
gi|347002473|gb|AEO68873.1| hypothetical protein THITE_2118639 [Thielavia terrestris NRRL 8126]
Length = 389
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 124/387 (32%), Positives = 176/387 (45%), Gaps = 65/387 (16%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ +K LK F I+ +P + VS +K+ I +G D P Q+ LI+ GK+LKD T+E
Sbjct: 1 MKITIKDLKQQRFTIDAEPTELVSALKQKISDERGWD--PKLQK-LIYSGKILKDEDTIE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
K+ E FVV ++ K K + S+A A A + T P +QT A
Sbjct: 58 SYKIEEKGFVVCVVNKPKEPKPAPAAESSASAAPATPAPAQTATPAAPAAPAQTAGTPAA 117
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P + S A P + A GQ + +A NLEA
Sbjct: 118 APATPTPSRTAAAEPGVGVGDSNTLA------------IGQERAEAIA--NLEA------ 157
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
MG ++R + A+RAA+ NPERAVEY+ +GIPE + SA A
Sbjct: 158 -MG---FERSQIDAAMRAAFYNPERAVEYILNGIPEN-----LQHTSARPAPAAAAAPAA 208
Query: 241 AQQPAAPAPTSGPNANPLDLFPQ---------------------GLPNMGSNAGAGTLDF 279
A A N N DL Q + + G G L+F
Sbjct: 209 APAAPAAGGDDDGNVNLFDLAAQQGRGSGARGGAGADAGAGAAAAVAAAAAQQGFGNLEF 268
Query: 280 LRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGN 339
LR++ QFQ LR +VQ PQ+L+P+LQ+LG NPHL +LI ++ FL+L++E
Sbjct: 269 LRHNAQFQQLRQVVQQQPQMLEPILQQLGAGNPHLAQLIAQNPEQFLQLLSES------- 321
Query: 340 VLGQLASAMP---QAVTVTPEEREAIE 363
G + +P Q ++VT EER+AIE
Sbjct: 322 --GDDDAPLPHGAQQISVTEEERDAIE 346
>gi|320166179|gb|EFW43078.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 331
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 77/216 (35%), Positives = 107/216 (49%), Gaps = 33/216 (15%)
Query: 163 ASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP---EQTA 219
A+ LV + E + Q+++ G ++R+ V+RALRAA+NNP+RA EYL++GIP EQ
Sbjct: 77 ANALVVDEDQERVILQLMEFG---FERDQVVRALRAAFNNPDRAAEYLFNGIPRHVEQAL 133
Query: 220 VPPVARASAGGQAGNPPAQTQAQQPA-------APAPTSGPNANPLDLFPQGLPNMGSNA 272
+ + Q P Q QQ APA G DLF + G
Sbjct: 134 AQQIGGGAHQQQQPQQPQAQQQQQGQPTQTQAPAPAQLGG------DLFAGDYEDEGDEG 187
Query: 273 GAGT------LDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFL 326
L+FLR+ QF LR +VQ NP +L P+L ++G+ NP L++ I +H FL
Sbjct: 188 EDEDADGPNPLEFLRSQPQFDQLRQLVQQNPNLLPPLLAQIGQANPQLLQAIDQHPQAFL 247
Query: 327 RLINEPVEGGEGNVLGQLASAMPQAVTVTPEEREAI 362
RL+ EP G G A + VT EE EAI
Sbjct: 248 RLLQEPAGGAPG--------AGQNVIRVTQEEHEAI 275
>gi|71410028|ref|XP_807329.1| UV excision repair RAD23-like protein [Trypanosoma cruzi strain CL
Brener]
gi|70871306|gb|EAN85478.1| UV excision repair RAD23-like protein, putative [Trypanosoma cruzi]
Length = 361
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 95/342 (27%), Positives = 148/342 (43%), Gaps = 63/342 (18%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ ++++ G+ EV P+ V VKK +E D Y L + G +L++ T+
Sbjct: 1 MKIVLRSIVGSEQVREVTPDTNVETVKKFLE-----DEYNTDSLRLCYNGAILENSKTMT 55
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTS----------TQPTT 110
E V EN+ ++ K + A ++AP Q +T SS PTS T P T
Sbjct: 56 ELGVKENAVFIIAGNKRNKNKPQAKPATSAPPPQTKTNSSFEPTSVGRGQWEGAITDPAT 115
Query: 111 TSQTPAPTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGS 170
S +S + PPP+ AP+ A ++G +
Sbjct: 116 -SGAGGAPGGIAESRQGAEPPPSEAAPSQGLA---------------LHGIDPT------ 153
Query: 171 NLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGG 230
V I+ MG DRE V ALRAAY NP+RAVE+L +GIP
Sbjct: 154 ----LVDNIIAMGFE--DREQVALALRAAYMNPDRAVEFLCTGIPSDVL----------- 196
Query: 231 QAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALR 290
Q N PA P+ +S ++ D + ++ + + L QF +R
Sbjct: 197 QRMNEPA-------INPSASSERMSSLTDRLTSHMRQ--DDSDSALYNALMQIPQFGEIR 247
Query: 291 TMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP 332
++VQANP+ L ++Q+L +P ++ LIQ+ FLR++ P
Sbjct: 248 SIVQANPESLPTVVQQLRIHHPEVIGLIQQDLEGFLRIMGNP 289
>gi|399218138|emb|CCF75025.1| unnamed protein product [Babesia microti strain RI]
Length = 334
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 96/380 (25%), Positives = 151/380 (39%), Gaps = 114/380 (30%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVY--PASQQMLIHQGKVLKDVTT 58
MK+ TLK +EV P D V + I GS + AS+ LIH GK+LK
Sbjct: 1 MKLIACTLKNVETCVEVDPSDTVDALTNKI----GSSLNNASASKMRLIHAGKILKMEQK 56
Query: 59 LEE-NKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAP 117
+ + + + + ++V+ +K Q+ A
Sbjct: 57 ISDYSDIKDGDKIIVLFSK------------------------------------QSEAS 80
Query: 118 TVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQ 177
T+A P P S P A P P P P + L+ G LE +
Sbjct: 81 TIANPTPAPTSTPIADANTSPPKPIPTTDP----------------NALLMGEELEKAIN 124
Query: 178 QILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPA 237
I++MG +D E+V A+ AA+NNP RA+E L R +
Sbjct: 125 GIVEMG---FDVESVKAAMSAAFNNPNRAIELL-------------TRHEVDVSDHDTH- 167
Query: 238 QTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANP 297
Q+ Q T + L +G LD LR F+ +R +V++NP
Sbjct: 168 --QSVQTTVSISTICYKNHEL---------------SGVLDELRQHPMFEQMRAIVRSNP 210
Query: 298 QILQPMLQELGKQNPHLMRL---------------IQEHQTDFLRLINEPVEGGEGNVLG 342
Q L +L +G+ +P L+++ I E+Q +F++L++EPV G G+ +
Sbjct: 211 QTLPQILSLIGQSDPSLLQVSLTIITYLIYYPYIAITENQEEFIQLLSEPVLGTSGDFID 270
Query: 343 QLASAMPQAVTVTPEEREAI 362
Q++T+TPEE E+I
Sbjct: 271 ------AQSITLTPEEMESI 284
>gi|4261672|gb|AAD13972.1|S65964_1111 Unknown [Saccharomyces cerevisiae]
gi|347495|gb|AAA34935.1| UV excision repair protein [Saccharomyces cerevisiae]
gi|347499|gb|AAA34938.1| UV excision repair protein [Saccharomyces cerevisiae]
gi|430824|gb|AAB28441.1| RAD23 [Saccharomyces cerevisiae]
Length = 398
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 99/362 (27%), Positives = 154/362 (42%), Gaps = 81/362 (22%)
Query: 42 SQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSA 101
SQ LI+ GKVL+D T+ E + + VV M+++ K + +T +
Sbjct: 40 SQIKLIYSGKVLQDSKTVSECGLKDGDQVVFMVSQKKST---------------KTKVTE 84
Query: 102 PPTSTQPTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQ 161
PP + + TT P + A P + APA P + + +
Sbjct: 85 PPIAPESATT---------PGRENSTEASPSTDASAAPAATAPEGSQPQEEQTATTERTE 135
Query: 162 AAS--NLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTA 219
+AS V G+ T+++I++MG + RE V RALRAA+NNP+RAVEYL GIPE
Sbjct: 136 SASTPGFVVGTERNETIERIMEMG---YQREEVERALRAAFNNPDRAVEYLLMGIPENLR 192
Query: 220 VPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDF 279
P + +A A T A+QPA DLF Q G NA +G L
Sbjct: 193 QPEPQQQTAAAAEQPSTAATTAEQPAED-----------DLFAQAA--QGGNASSGALGT 239
Query: 280 LRNS----------------QQFQALRTMVQANPQILQPMLQELGKQNPH---------- 313
+ + +LR +V NP+ L+P+L+ + + P
Sbjct: 240 TGGATDAAQGGPPGSIGLTVEDLLSLRQVVSGNPEALRPLLENISARYPQLREHIMANPE 299
Query: 314 -----LMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASA-MPQA-------VTVTPEERE 360
L+ + ++ D + ++ VEG + V G+ A+A + Q V TPE+ +
Sbjct: 300 VFVSMLLEAVGDNMQDVMEGADDMVEGEDIEVTGEAAAAGLGQGEGEGSFQVDYTPEDDQ 359
Query: 361 AI 362
AI
Sbjct: 360 AI 361
>gi|4336714|gb|AAD17913.1| repC-binding protein A [Dictyostelium discoideum]
Length = 341
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 93/330 (28%), Positives = 136/330 (41%), Gaps = 54/330 (16%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV +K + + EV + V+++K I S Q LI+ GK+L+D TLE
Sbjct: 1 MKVTIKNINKEIYVFEVNGDLTVAELKNLISEKHNQ---TPSWQTLIYSGKILEDKRTLE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQT-PAPTV 119
+ ++ F+ +M+ K + A + AP+ TT ST +T P +
Sbjct: 58 SYNITDSGFIXMMIKKPR----EAPATTPAPS----TTPHLNYISTNHHHYCRTNPNHXL 109
Query: 120 APPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQI 179
S P PA + S S Q +S+ G+ LEAT++ I
Sbjct: 110 TNNTSTTTPTSVPTPTNNTPATPNPTPTTSSTPGSTSTTSPQQSSDFATGTELEATIKNI 169
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 239
DMG + R+ V+RALR +NN ERA+EYL SG N PA
Sbjct: 170 TDMG---FARDQVLRALRLTFNNAERAIEYLVSG--------------------NIPAAN 206
Query: 240 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQI 299
+ G NP + LRN F LR + NP I
Sbjct: 207 DPEDEEEMEGGGGSGDNPFEA-------------------LRNHPHFNLLREAISKNPSI 247
Query: 300 LQPMLQELGKQNPHLMRLIQEHQTDFLRLI 329
+ +LQ+L + NP L+R IQE+ +F+RL
Sbjct: 248 IPGILQQLAQTNPALVRQIQENPNEFIRLF 277
>gi|426387417|ref|XP_004060165.1| PREDICTED: UV excision repair protein RAD23 homolog A isoform 3
[Gorilla gorilla gorilla]
gi|194375626|dbj|BAG56758.1| unnamed protein product [Homo sapiens]
Length = 198
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 71/194 (36%), Positives = 103/194 (53%), Gaps = 45/194 (23%)
Query: 178 QILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPA 237
+I+ MG ++RE V+ ALRA+YNNP RAVEYL +GIP S + G+
Sbjct: 4 EIMSMG---YERERVVAALRASYNNPHRAVEYLLTGIP----------GSPEPEHGSVQE 50
Query: 238 QTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANP 297
++QPA A AG L+FLR+ QFQ +R ++Q NP
Sbjct: 51 SQVSEQPATEA-----------------------AGENPLEFLRDQPQFQNMRQVIQQNP 87
Query: 298 QILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP------VEGGEGNVLGQLASAMPQA 351
+L +LQ+LG++NP L++ I HQ F++++NEP + EG V G + PQ
Sbjct: 88 ALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELADISDVEGEV-GAIGEEAPQM 146
Query: 352 --VTVTPEEREAIE 363
+ VTP+E+EAIE
Sbjct: 147 NYIQVTPQEKEAIE 160
>gi|260821380|ref|XP_002606011.1| hypothetical protein BRAFLDRAFT_61506 [Branchiostoma floridae]
gi|229291348|gb|EEN62021.1| hypothetical protein BRAFLDRAFT_61506 [Branchiostoma floridae]
Length = 315
Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 65/203 (32%), Positives = 99/203 (48%), Gaps = 65/203 (32%)
Query: 167 VAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARA 226
V G+ E V ++ MG ++R+ V+ ALRA++NNP+RAVEYL +G+P
Sbjct: 133 VTGTAYETMVTSMMSMG---FERDQVVAALRASFNNPDRAVEYLLTGLP----------- 178
Query: 227 SAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQF 286
PA P L+FLR+ QF
Sbjct: 179 -----------------PAMENP---------------------------LEFLRDQPQF 194
Query: 287 QALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGN------V 340
+R ++++NP +L +LQ LG+ NP L++ I +HQ +F+ ++NEPVEG G V
Sbjct: 195 NNMRQLIRSNPTLLSALLQNLGQSNPQLLQHINDHQQEFIEMLNEPVEGEGGAAGSGPPV 254
Query: 341 LGQLASAMPQAVTVTPEEREAIE 363
+ QL + + VTP+E+EAIE
Sbjct: 255 MEQLPTGQ-NVIPVTPQEKEAIE 276
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 49/76 (64%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V KTL+ F+IE++ V +K+ +E +G + +PA+ LI+ GK+L+D L
Sbjct: 1 MQVTFKTLQQQTFKIEIEENATVKQLKEKVEGEKGKESFPAAGLKLIYAGKILQDDLPLS 60
Query: 61 ENKVAENSFVVVMLTK 76
+ K+ E +FVVVM+TK
Sbjct: 61 QYKIDEKNFVVVMVTK 76
>gi|413954954|gb|AFW87603.1| hypothetical protein ZEAMMB73_681598 [Zea mays]
Length = 104
Score = 91.3 bits (225), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 45/62 (72%), Positives = 55/62 (88%), Gaps = 1/62 (1%)
Query: 303 MLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG-EGNVLGQLASAMPQAVTVTPEEREA 361
MLQELGKQNP ++RLIQE+Q +FLRL+NE EGG GN+LGQLA+A+PQ +TVTPEEREA
Sbjct: 1 MLQELGKQNPQILRLIQENQAEFLRLVNESPEGGPGGNILGQLAAAVPQTLTVTPEEREA 60
Query: 362 IE 363
I+
Sbjct: 61 IQ 62
>gi|398364251|ref|NP_010877.3| Rad23p [Saccharomyces cerevisiae S288c]
gi|418413|sp|P32628.1|RAD23_YEAST RecName: Full=UV excision repair protein RAD23
gi|409247|gb|AAA16070.1| DNA repair protein [Saccharomyces cerevisiae]
gi|603642|gb|AAB65005.1| Rad23p [Saccharomyces cerevisiae]
gi|51013487|gb|AAT93037.1| YEL037C [Saccharomyces cerevisiae]
gi|151944674|gb|EDN62933.1| radiation sensitive protein [Saccharomyces cerevisiae YJM789]
gi|190405529|gb|EDV08796.1| UV excision repair protein RAD23 [Saccharomyces cerevisiae RM11-1a]
gi|285811588|tpg|DAA07616.1| TPA: Rad23p [Saccharomyces cerevisiae S288c]
gi|323309458|gb|EGA62674.1| Rad23p [Saccharomyces cerevisiae FostersO]
gi|323333880|gb|EGA75269.1| Rad23p [Saccharomyces cerevisiae AWRI796]
gi|349577621|dbj|GAA22789.1| K7_Rad23p [Saccharomyces cerevisiae Kyokai no. 7]
gi|365765999|gb|EHN07500.1| Rad23p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
gi|392299909|gb|EIW11001.1| Rad23p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 398
Score = 91.3 bits (225), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 99/362 (27%), Positives = 153/362 (42%), Gaps = 81/362 (22%)
Query: 42 SQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSA 101
SQ LI+ GKVL+D T+ E + + VV M+++ K + +T +
Sbjct: 40 SQIKLIYSGKVLQDSKTVSECGLKDGDQVVFMVSQKKST---------------KTKVTE 84
Query: 102 PPTSTQPTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQ 161
PP + + TT P + A P + APA P + + +
Sbjct: 85 PPIAPESATT---------PGRENSTEASPSTDASAAPAATAPEGSQPQEEQTATTERTE 135
Query: 162 AAS--NLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTA 219
+AS V G+ T+++I++MG + RE V RALRAA+NNP+RAVEYL GIPE
Sbjct: 136 SASTPGFVVGTERNETIERIMEMG---YQREEVERALRAAFNNPDRAVEYLLMGIPENLR 192
Query: 220 VPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDF 279
P + +A A T A+QPA DLF Q G NA +G L
Sbjct: 193 QPEPQQQTAAAAEQPSTAATTAEQPAED-----------DLFAQAA--QGGNASSGALGT 239
Query: 280 LRNS----------------QQFQALRTMVQANPQILQPMLQELGKQNPH---------- 313
+ + +LR +V NP+ L P+L+ + + P
Sbjct: 240 TGGATDAAQGGPPGSIGLTVEDLLSLRQVVSGNPEALAPLLENISARYPQLREHIMANPE 299
Query: 314 -----LMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASA-MPQA-------VTVTPEERE 360
L+ + ++ D + ++ VEG + V G+ A+A + Q V TPE+ +
Sbjct: 300 VFVSMLLEAVGDNMQDVMEGADDMVEGEDIEVTGEAAAAGLGQGEGEGSFQVDYTPEDDQ 359
Query: 361 AI 362
AI
Sbjct: 360 AI 361
>gi|323305178|gb|EGA58925.1| Rad23p [Saccharomyces cerevisiae FostersB]
Length = 401
Score = 90.9 bits (224), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 99/362 (27%), Positives = 153/362 (42%), Gaps = 81/362 (22%)
Query: 42 SQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSA 101
SQ LI+ GKVL+D T+ E + + VV M+++ K + +T +
Sbjct: 40 SQIKLIYSGKVLQDSKTVSECGLKDGDQVVFMVSQKKST---------------KTKVTE 84
Query: 102 PPTSTQPTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQ 161
PP + + TT P + A P + APA P + + +
Sbjct: 85 PPIAPESATT---------PGRENSTEASPSTDASAAPAATAPEGSQPQEEQTATTERTE 135
Query: 162 AASN--LVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTA 219
+AS V G+ T+++I++MG + RE V RALRAA+NNP+RAVEYL GIPE
Sbjct: 136 SASTPGFVVGTERNETIERIMEMG---YQREEVERALRAAFNNPDRAVEYLLMGIPENLR 192
Query: 220 VPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDF 279
P + +A A T A+QPA DLF Q G NA +G L
Sbjct: 193 QPEPQQQTAAAAEQPSTAATTAEQPAED-----------DLFAQAA--QGGNASSGALGT 239
Query: 280 LRNS----------------QQFQALRTMVQANPQILQPMLQELGKQNPH---------- 313
+ + +LR +V NP+ L P+L+ + + P
Sbjct: 240 TGGATDAAQGGPPGSIGLTVEDLLSLRQVVSGNPEALAPLLENISARYPQLREHIMANPE 299
Query: 314 -----LMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASA-MPQA-------VTVTPEERE 360
L+ + ++ D + ++ VEG + V G+ A+A + Q V TPE+ +
Sbjct: 300 VFVSMLLEAVGDNMQDVMEGADDMVEGEDIEVTGEAAAAGLGQGEGEGSFQVDYTPEDDQ 359
Query: 361 AI 362
AI
Sbjct: 360 AI 361
>gi|256273801|gb|EEU08724.1| Rad23p [Saccharomyces cerevisiae JAY291]
Length = 398
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 99/362 (27%), Positives = 153/362 (42%), Gaps = 81/362 (22%)
Query: 42 SQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSA 101
SQ LI+ GKVL+D T+ E + + VV M+++ K + +T +
Sbjct: 40 SQIKLIYSGKVLQDSKTVSECGLKDGDQVVFMVSQKKST---------------KTKVTE 84
Query: 102 PPTSTQPTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQ 161
PP + + TT P + A P + APA P + + +
Sbjct: 85 PPIAPESATT---------PGRENSTEASPSTDASAAPAATAPEGSQPQEEQTATTEGTE 135
Query: 162 AAS--NLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTA 219
+AS V G+ T+++I++MG + RE V RALRAA+NNP+RAVEYL GIPE
Sbjct: 136 SASTPGFVVGTERNETIERIMEMG---YQREEVERALRAAFNNPDRAVEYLLMGIPENLR 192
Query: 220 VPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDF 279
P + +A A T A+QPA DLF Q G NA +G L
Sbjct: 193 QPEPQQQTAAAAEQPSTAATTAEQPAED-----------DLFAQAA--QGGNASSGALGT 239
Query: 280 LRNS----------------QQFQALRTMVQANPQILQPMLQELGKQNPH---------- 313
+ + +LR +V NP+ L P+L+ + + P
Sbjct: 240 TGGATDAAQGGPPGSIGLTVEDLLSLRQVVSGNPEALAPLLENISARYPQLREHIMANPE 299
Query: 314 -----LMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASA-MPQA-------VTVTPEERE 360
L+ + ++ D + ++ VEG + V G+ A+A + Q V TPE+ +
Sbjct: 300 VFVSMLLEAVGDNMQDVMEGADDMVEGEDIEVTGEAAAAGLGQGEGEGSFQVDYTPEDDQ 359
Query: 361 AI 362
AI
Sbjct: 360 AI 361
>gi|194764815|ref|XP_001964524.1| GF23005 [Drosophila ananassae]
gi|190614796|gb|EDV30320.1| GF23005 [Drosophila ananassae]
Length = 318
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 96/368 (26%), Positives = 154/368 (41%), Gaps = 93/368 (25%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ ++TL ++E+ V +K+ + ++ + P Q LI+ G++++D L
Sbjct: 1 MKISIRTLDQRTIKLEMSDSQDVRALKQRLGSMPEVAI-PVESQQLIYGGRIMEDALPLS 59
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ K+AE+ F+V+M G A PA A + PPT P T
Sbjct: 60 DYKIAEDKFIVLM---------GKKMPPAKPAGTA-AEENVPPT----------PPLTAG 99
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P ++ PP + P P+ P E V+ ++
Sbjct: 100 PSETRTHEIPPLSPAPALVMAPPPAPPSMTPN--------------------EQRVRDLM 139
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
MG G + V ALRA++N+PERA+EYL SGIP+ P A A+A G A
Sbjct: 140 AMGYGE---QEVRAALRASFNHPERAIEYLISGIPQNAPQP--ANATASGPA-------- 186
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQIL 300
PN P P +F +R M++ NP++L
Sbjct: 187 ------------PNLQPWMSDP----------------------RFARVRDMLRQNPELL 212
Query: 301 QPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEG--GEGNVL---GQLASAMPQAVTVT 355
+ +L L + +P I++HQ +FL +IN G GEG+ L ++ +A +T+T
Sbjct: 213 EVVLSRLAETDPSAFEAIRDHQDEFLSMINGSSAGSVGEGSDLSEDSEMDAASRHQITLT 272
Query: 356 PEEREAIE 363
EE A+E
Sbjct: 273 SEEAAAVE 280
>gi|171686384|ref|XP_001908133.1| hypothetical protein [Podospora anserina S mat+]
gi|170943153|emb|CAP68806.1| unnamed protein product [Podospora anserina S mat+]
Length = 383
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 114/384 (29%), Positives = 171/384 (44%), Gaps = 69/384 (17%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV K LK F IE +P D +S VK+ + G D PA Q+ LI+ GK+LKD T+E
Sbjct: 1 MKVNFKDLKQQKFTIEFEPTDLISTVKQKLSEDHGWD--PALQK-LIYSGKILKDEDTIE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
K+ E FVV M++K K + S++ ++ T P +Q A
Sbjct: 58 SCKIEEKGFVVCMVSKPKAPKPAPAAESSSVVPATPAQAAPASTPAPPAAPAQVSNAASA 117
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P + + AP + A A A A +N+EA
Sbjct: 118 APATPSPN-RTSGAPNDSSALAMGEQRAQAI------------------ANMEA------ 152
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
MG ++R + A+RAA+ NPERAVEYL +GIPE V + +A + G+
Sbjct: 153 -MG---FERSQIDAAMRAAFFNPERAVEYLLTGIPEN-----VQQQTAAQRVGHAIPPPA 203
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNA------------------GAGTLDFLRN 282
+ ++G A DL + L ++ + A G L +LR
Sbjct: 204 PAAASPAPASAGEAAG--DLEGENLFDLAARAGGARSGSGGAAAAGASAQDLGNLSWLRQ 261
Query: 283 SQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLG 342
+ QFQ LR +VQ P +L+ +LQ+L NP L + I ++ FL+L++E G
Sbjct: 262 NAQFQQLRQVVQQQPGMLEQILQQLSAGNPQLAQTIAQNPEQFLQLLSEH---------G 312
Query: 343 QLASAMP---QAVTVTPEEREAIE 363
+ +P ++VT EER+AIE
Sbjct: 313 DDDAPLPPGAHQISVTEEERDAIE 336
>gi|344302977|gb|EGW33251.1| hypothetical protein SPAPADRAFT_60596 [Spathaspora passalidarum
NRRL Y-27907]
Length = 377
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 72/217 (33%), Positives = 100/217 (46%), Gaps = 36/217 (16%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++ K K IEV+ D V K+ + + + ASQ L++ GKVL D TLE
Sbjct: 1 MQIIFKDFKKQTVPIEVELTDTVLSTKEKLGQAKSCE---ASQIKLVYSGKVLVDDKTLE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTT-SSAPPTSTQPTTTSQTPAPTV 119
E K+ E ++ M++K+K S+ S+ P QA T P + +QP +
Sbjct: 58 EYKIKEGVSIIFMISKAK------SSQSSTPQPQAAATPEQKPASESQPKQETSQLGNAA 111
Query: 120 APPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQI 179
A + + A APA S GS EAT+Q I
Sbjct: 112 ATSAAAAAAPASDEAVTEAPA-----------------------STFAVGSEREATIQNI 148
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE 216
++MG +DR V ALRAA+NNP RAVEYL +GIPE
Sbjct: 149 MEMG---YDRPQVENALRAAFNNPHRAVEYLITGIPE 182
>gi|453087458|gb|EMF15499.1| UV excision repair protein Rad23 [Mycosphaerella populorum SO2202]
Length = 392
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 82/233 (35%), Positives = 116/233 (49%), Gaps = 50/233 (21%)
Query: 164 SNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPV 223
S L G A + + MG + R+ + A+RAA+ NP+RAVEYL +GIPE
Sbjct: 135 SALAMGEQRAAAIAGMEAMG---FARDQIDAAMRAAFFNPDRAVEYLLNGIPESARQEQR 191
Query: 224 ARASAGGQAGNPPAQTQAQQPA--APAPTSGPNAN--PLDLFPQGLPNMGSNAG------ 273
A A++ PA TQ QQPA A A T+ A+ P++LF G G
Sbjct: 192 AAAAS-----PQPAPTQGQQPADTAGAETTQQQASDEPVNLFEAAAQAGGGGRGGAGGRG 246
Query: 274 --------------------AGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPH 313
+ LDFLRN+ QFQ LRT+VQ PQ+L+P+LQ + NP
Sbjct: 247 AGDLGALGGGRGGAQGGQTESSQLDFLRNNPQFQQLRTVVQQQPQMLEPILQSVAAGNPQ 306
Query: 314 LMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMP---QAVTVTPEEREAIE 363
L ++I +H F++L+ E + G+ A+P Q ++VT EER+AIE
Sbjct: 307 LAQIITQHPEQFMQLLAE--DAGDD-------VAIPPGAQEISVTAEERDAIE 350
>gi|46124779|ref|XP_386943.1| hypothetical protein FG06767.1 [Gibberella zeae PH-1]
Length = 359
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 114/391 (29%), Positives = 159/391 (40%), Gaps = 103/391 (26%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV K LK F ++V+P + + QGK+LKD T+
Sbjct: 1 MKVTFKDLKQQKFTLDVEPSE-------------------------LFQGKILKDDETVG 35
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ E FVV M+ K K PT +++ A A
Sbjct: 36 SYNIEEKGFVVCMVNKPK-----------------------------PTKPAESSAAPPA 66
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPA-PAPVSSVSDVYGQAASNLVAGSNLEATVQQI 179
P + P P A A A PA P P S +D + S L GS + +
Sbjct: 67 TPAAPPTRTPAAPAAPAQSASQQAAVPATPTPQRS-ADAGSEEPSGLAMGSQRTEAIANM 125
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 239
MG ++R + A+RAA+NNP+RAVEYL +GIP+ R + P A
Sbjct: 126 EAMG---FERSQIEAAMRAAFNNPDRAVEYLLNGIPDNI------RQEQQQREAAPAAHA 176
Query: 240 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNA----------------------GAGTL 277
A A G ++LF + G+NA G L
Sbjct: 177 AQPSQPAAAAPQGGEEGGVNLFDLAAQHGGTNARGGSGGNEAAAAAAAAAAGQGGDLGNL 236
Query: 278 DFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGE 337
DFLR++ QFQ LR +VQ PQ+L+P+LQ+LG NP L LI + FL+L+ E +
Sbjct: 237 DFLRHNAQFQQLRQIVQQQPQMLEPILQQLGAGNPQLAELIASNPDQFLQLLGEYAD--- 293
Query: 338 GNVLGQLASAMP-----QAVTVTPEEREAIE 363
+P QA++VT EER+AIE
Sbjct: 294 --------DDVPLPPGAQAISVTEEERDAIE 316
>gi|71416587|ref|XP_810308.1| UV excision repair RAD23-like protein [Trypanosoma cruzi strain CL
Brener]
gi|70874820|gb|EAN88457.1| UV excision repair RAD23-like protein, putative [Trypanosoma cruzi]
Length = 361
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 100/376 (26%), Positives = 161/376 (42%), Gaps = 67/376 (17%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ ++++ G+ EV P+ + VKK +E D Y L + G + ++ T+
Sbjct: 1 MKIVLRSIVGSEQVREVTPDTNIETVKKFLE-----DEYNTDSLRLCYNGAIPENSKTMT 55
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTS----------TQP-T 109
E V EN+ ++ K + A ++ P Q +T SS PTS T+P T
Sbjct: 56 ELGVQENAVFIIAGNKRNKNKPQAKPATSVPPPQTKTNSSFEPTSVGHGQGEGAITEPAT 115
Query: 110 TTSQTPAPTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAG 169
+ + + + PQ E PPP+ AP+ A + V N++A
Sbjct: 116 SGAGGASGGITEPQQGAE--PPPSEAAPSQGLA------------LHGVDPTLVDNIIAM 161
Query: 170 SNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAG 229
G DRE V ALRAAY NP+RAVE+L +GIP
Sbjct: 162 ---------------GFEDREQVALALRAAYMNPDRAVEFLCTGIPSDVL---------- 196
Query: 230 GQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQAL 289
Q N PA P+ +S ++ D + ++ + + L QF +
Sbjct: 197 -QRMNEPA-------INPSASSERMSSLTDRLTSHMRQ--DDSDSALYNALMQIPQFGEI 246
Query: 290 RTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMP 349
R++VQANP+ L ++Q+L +P ++ LIQ+ FLR++ P + G P
Sbjct: 247 RSIVQANPESLPTVVQQLRIHHPEVIGLIQQDLEGFLRIMGNPGQTEFTTSTGGGGDVPP 306
Query: 350 QAVTV--TPEEREAIE 363
+V++ EER AI+
Sbjct: 307 DSVSIPLREEERVAIQ 322
>gi|410079523|ref|XP_003957342.1| hypothetical protein KAFR_0E00530 [Kazachstania africana CBS 2517]
gi|372463928|emb|CCF58207.1| hypothetical protein KAFR_0E00530 [Kazachstania africana CBS 2517]
Length = 379
Score = 87.8 bits (216), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 97/366 (26%), Positives = 148/366 (40%), Gaps = 71/366 (19%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + K K +E++ + D K + +++ D+ Q LI GKVLKD T+
Sbjct: 1 MNIIFKDFKKEKIPVELESSSTILDAKNKLASIKSCDI---DQIKLIFSGKVLKDDQTVS 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ +N V++M++K K A P++T+ T
Sbjct: 58 SCGLKDNDQVIMMISKKK----------------------ATPSATKVT----------E 85
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASN---LVAGSNLEATVQ 177
PPQ E P P+ P+ A + +++ V GS TV+
Sbjct: 86 PPQQSEEQ--PVQEPSQEQEPSGTTAEPAPIAPAAPVAAEPESTSTPGFVTGSERNETVE 143
Query: 178 QILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPA 237
+I++MG ++R+ V RALRAA+NNP+RAVEYL GIPE PP + +
Sbjct: 144 RIMEMG---YERDQVERALRAAFNNPDRAVEYLLMGIPENLQQPPPPQQESQSAETQQQQ 200
Query: 238 QTQAQQPAAPAP---TSGPNANPLDLFPQGL--------PNMGSNAGA-GTLDFLRNSQQ 285
Q Q + P ++ DLF Q SNA A G++ +
Sbjct: 201 QQQQESERQNQPEAESTNEQYEGEDLFAQAAQGTRDTTGSGADSNASAPGSIGL--TMED 258
Query: 286 FQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRL--------------INE 331
ALR +V NP+ L P+L+ L + P L I + F+ + I E
Sbjct: 259 LLALRQVVSGNPEALAPLLESLSTRYPQLREQIMANPEVFISMLLDAVGDNLNAMENITE 318
Query: 332 PVEGGE 337
PVE E
Sbjct: 319 PVENAE 324
>gi|336470133|gb|EGO58295.1| hypothetical protein NEUTE1DRAFT_117137 [Neurospora tetrasperma
FGSC 2508]
gi|350290173|gb|EGZ71387.1| UV excision repair protein Rad23 [Neurospora tetrasperma FGSC 2509]
Length = 383
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 75/204 (36%), Positives = 100/204 (49%), Gaps = 26/204 (12%)
Query: 173 EATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQA 232
E + I +M ++R + A+RAA+ NPERAVEYL +GIP +R + A
Sbjct: 149 EQRAEAIANMEAMGFERSQIDAAMRAAFFNPERAVEYLLNGIPANLQQQTASRQPSAAPA 208
Query: 233 GNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPN-------------MGSNAGAGTLDF 279
P A QA PAA N DL Q L N AG G LDF
Sbjct: 209 AAPAAAAQAASPAAAGGDDDDQVNLFDLAAQ-LGNSAGGRGARGAEGAGAEAAGLGNLDF 267
Query: 280 LRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGN 339
LRN+ QFQ +R +VQ PQ+L+P+LQ+LG NP L ++I ++ FL N
Sbjct: 268 LRNNAQFQQMRQLVQEQPQMLEPILQQLGAGNPQLAQMIAQNSDQFL------------N 315
Query: 340 VLGQLASAMPQAVTVTPEEREAIE 363
+LG+ + VT EER+AIE
Sbjct: 316 LLGEGGEGGSVGIAVTEEERDAIE 339
>gi|164423937|ref|XP_959055.2| hypothetical protein NCU07542 [Neurospora crassa OR74A]
gi|157070296|gb|EAA29819.2| conserved hypothetical protein [Neurospora crassa OR74A]
Length = 383
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 75/204 (36%), Positives = 100/204 (49%), Gaps = 26/204 (12%)
Query: 173 EATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQA 232
E + I +M ++R + A+RAA+ NPERAVEYL +GIP +R + A
Sbjct: 149 EQRAEAIANMEAMGFERSQIDAAMRAAFFNPERAVEYLLNGIPANLQQQTASRQPSAAPA 208
Query: 233 GNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPN-------------MGSNAGAGTLDF 279
P A QA PAA N DL Q L N AG G LDF
Sbjct: 209 AAPAAAAQAASPAAAGGDDDDQVNLFDLAAQ-LGNSAGGRGARGAEGAGAEAAGLGNLDF 267
Query: 280 LRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGN 339
LRN+ QFQ +R +VQ PQ+L+P+LQ+LG NP L ++I ++ FL N
Sbjct: 268 LRNNAQFQQMRQLVQEQPQMLEPILQQLGAGNPQLAQMIAQNSDQFL------------N 315
Query: 340 VLGQLASAMPQAVTVTPEEREAIE 363
+LG+ + VT EER+AIE
Sbjct: 316 LLGEGGEGGSVGIAVTEEERDAIE 339
>gi|380094252|emb|CCC08469.1| putative RAD23 protein [Sordaria macrospora k-hell]
Length = 423
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 78/216 (36%), Positives = 108/216 (50%), Gaps = 38/216 (17%)
Query: 173 EATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP---EQTAVPP------V 223
E + I +M ++R + A+RAAYNNPERAVEYL +GIP +Q A
Sbjct: 177 EQRAEAIANMEAMGFERSQIDAAMRAAYNNPERAVEYLLNGIPANLQQQAASSRQPSAAP 236
Query: 224 ARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGA--------- 274
A A A A P A AQ + A G + P++LF +G++AG
Sbjct: 237 AAAPAAAPAAAPAAAPAAQAASPAAAAGGDDEGPVNLFDLA-AQLGNSAGGRGARGAEGA 295
Query: 275 -------GTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLR 327
G LDFLRN+ QFQ +R +VQ PQ+L+P+LQ+LG NP L ++I ++ FL
Sbjct: 296 GAEAAGLGNLDFLRNNAQFQQMRQLVQEQPQMLEPILQQLGAGNPQLAQMIAQNSDQFL- 354
Query: 328 LINEPVEGGEGNVLGQLASAMPQAVTVTPEEREAIE 363
N+LG+ + VT EER+AIE
Sbjct: 355 -----------NLLGEGGEGGSVGIAVTEEERDAIE 379
Score = 50.8 bits (120), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 50/106 (47%), Gaps = 21/106 (19%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV K LK F +E++P + ++ VK I +G + Q LI+ GK+LKD T+E
Sbjct: 1 MKVTFKDLKQQKFTLEIEPTETIAKVKAKISEERG---WAPELQKLIYSGKILKDEETVE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTST 106
K+ E FVV ++ K K TT+ P S+
Sbjct: 58 SYKIEEKGFVVCVVNKPK------------------TTAPKPAESS 85
>gi|444526365|gb|ELV14316.1| UV excision repair protein RAD23 like protein A [Tupaia chinensis]
Length = 261
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 71/208 (34%), Positives = 102/208 (49%), Gaps = 64/208 (30%)
Query: 167 VAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARA 226
V GS E + +I+ MG ++RE V+ ALRA+YNNP RAVEYL
Sbjct: 59 VTGSEYETMLTEIMSMG---YERERVVAALRASYNNPHRAVEYLL--------------- 100
Query: 227 SAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQF 286
T++Q PA +G N L+FLR+ QF
Sbjct: 101 ------------TESQVSEQPATEAGDN---------------------PLEFLRDQPQF 127
Query: 287 QALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP-----------VEG 335
Q +R ++Q NP +L +LQ+LG++NP L++ I HQ F++++NEP VE
Sbjct: 128 QNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELADISDVDVE- 186
Query: 336 GEGNVLGQLASAMPQAVTVTPEEREAIE 363
GE +G+ A M + VTP+E+EAIE
Sbjct: 187 GEVGAIGEEAPQM-NYIQVTPQEKEAIE 213
>gi|68466693|ref|XP_722542.1| hypothetical protein CaO19.1494 [Candida albicans SC5314]
gi|68466980|ref|XP_722405.1| hypothetical protein CaO19.9071 [Candida albicans SC5314]
gi|46444377|gb|EAL03652.1| hypothetical protein CaO19.9071 [Candida albicans SC5314]
gi|46444523|gb|EAL03797.1| hypothetical protein CaO19.1494 [Candida albicans SC5314]
Length = 348
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 68/205 (33%), Positives = 94/205 (45%), Gaps = 30/205 (14%)
Query: 162 AASN---LVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQT 218
AASN GS EA++Q I++MG ++R V ALRAA+NNP RAVEYL +GIPE
Sbjct: 75 AASNESTFAVGSEREASIQNIMEMG---YERPQVEAALRAAFNNPHRAVEYLLTGIPESL 131
Query: 219 AVP-----PVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAG 273
P P A +A Q QQ + +LF
Sbjct: 132 QHPVAPAQPPATGTAPAQQTEGNTSESGQQGEDEEHEGDESTQHENLFEAAAAAAAGAGA 191
Query: 274 A--------------GTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQ 319
G + L + QQ Q LR +Q+NP+++QP+L++L NP + LIQ
Sbjct: 192 GGAGSGAGAGAGSAEGDIGGLGDDQQMQLLRAALQSNPELIQPLLEQLAASNPQIANLIQ 251
Query: 320 EHQTDFLRLINEPVEG--GEGNVLG 342
+ F+R+ + G G GN LG
Sbjct: 252 QDPEAFIRMF---LSGAPGSGNDLG 273
>gi|238881986|gb|EEQ45624.1| conserved hypothetical protein [Candida albicans WO-1]
Length = 348
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 68/205 (33%), Positives = 94/205 (45%), Gaps = 30/205 (14%)
Query: 162 AASN---LVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQT 218
AASN GS EA++Q I++MG ++R V ALRAA+NNP RAVEYL +GIPE
Sbjct: 75 AASNESTFAVGSEREASIQNIMEMG---YERPQVEAALRAAFNNPHRAVEYLLTGIPESL 131
Query: 219 AVP-----PVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAG 273
P P A +A Q QQ + +LF
Sbjct: 132 QHPVAPAQPPATGTAPAQQTEGNTSESGQQGEDEEHEGDESTQHENLFEAAAAAAAGAGA 191
Query: 274 A--------------GTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQ 319
G + L + QQ Q LR +Q+NP+++QP+L++L NP + LIQ
Sbjct: 192 GGAGSGAGAGAGSAEGDIGGLGDDQQMQLLRAALQSNPELIQPLLEQLAASNPQIANLIQ 251
Query: 320 EHQTDFLRLINEPVEG--GEGNVLG 342
+ F+R+ + G G GN LG
Sbjct: 252 QDPEAFIRMF---LSGAPGSGNDLG 273
>gi|242793918|ref|XP_002482264.1| UV excision repair protein (RadW), putative [Talaromyces stipitatus
ATCC 10500]
gi|218718852|gb|EED18272.1| UV excision repair protein (RadW), putative [Talaromyces stipitatus
ATCC 10500]
Length = 375
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 71/216 (32%), Positives = 105/216 (48%), Gaps = 31/216 (14%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ + LK F IE +P + V VK+ I +G + ASQQ LI+ GK+L+D T+E
Sbjct: 1 MKLTFRDLKQQKFTIEAEPTETVGQVKEKIAREKG---WEASQQKLIYSGKILQDANTIE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ E F+V M++K K ++G + A A A ++ A S Q P+
Sbjct: 58 SYNIEEKGFIVCMVSKPK-PAAGGPSTPAKAAPPATPSAPAQAPSASTAAAPQVPS---- 112
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P PA + A A ++ +D S L GS EA + Q+
Sbjct: 113 ---------------TPTPASSGATTAATGEAAAFND-----PSALAMGSQGEAVISQME 152
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE 216
MG + R + RA+RAA+ NP+RAV+YL +GIPE
Sbjct: 153 AMG---FPRADIDRAMRAAFFNPDRAVDYLLNGIPE 185
>gi|388856731|emb|CCF49691.1| related to RAD23-nucleotide excision repair protein (ubiquitin-like
protein) [Ustilago hordei]
Length = 424
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 68/227 (29%), Positives = 107/227 (47%), Gaps = 45/227 (19%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ +K+L G +F ++ + D + +K I+ QG +P Q +I GK+L D T+
Sbjct: 1 MKILIKSLAGGNFHLDAELTDTIGTIKSKIQKEQG---HPPELQKIIFSGKILTDDKTVA 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGAST---VSAAPANQAQTTSSAPPTSTQPTTTSQTPAP 117
+ + E F+VVM++K K A+ V +APA
Sbjct: 58 DCNIKEKDFLVVMVSKPKAPKPAAAADKPVESAPA------------------------- 92
Query: 118 TVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSD---VYGQAASNLVAGSNLEA 174
E A A APA + +P+S ++ G + + + G LE+
Sbjct: 93 --------AEEANKDDATAPAANTTATQSTTTSPISDSTEGQTTTGGDSGSFLTGGPLES 144
Query: 175 TVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP 221
+ +++MG + RE V RA+RAA+NNP+RAVEYL +GIPE A P
Sbjct: 145 AMSSMMEMG---FQREQVQRAMRAAFNNPDRAVEYLMTGIPEHLANP 188
>gi|390335920|ref|XP_001176797.2| PREDICTED: UV excision repair protein RAD23 homolog B-like isoform
1 [Strongylocentrotus purpuratus]
Length = 467
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 65/210 (30%), Positives = 97/210 (46%), Gaps = 15/210 (7%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + +KTL+ F +E++ V ++K IE QG D +PAS Q LI+ GK+L D L
Sbjct: 1 MLIVLKTLQQQTFRVEIEDSATVRNLKDEIEKTQGKD-FPASGQKLIYAGKILSDDNPLS 59
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ E SFVVVM+TK + A P T ++ + VA
Sbjct: 60 SYNIDEKSFVVVMVTKRLQTEEKKEE----------KKEEAKPQETAAAASASASSAPVA 109
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
+ ++A A PA S + + A S LV G + V +++
Sbjct: 110 MEEGTTKAAEEKKTEEKAAEPAAETKTQEESSSGLQ-AFHSAESTLVTGEEYQNMVTELM 168
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYL 210
+G + R+ VIRA++A+YNNP RA EYL
Sbjct: 169 SLG---FPRDKVIRAMQASYNNPNRAAEYL 195
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 86/173 (49%), Gaps = 31/173 (17%)
Query: 159 YGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQT 218
+ A S LV G + V +++ +G + R+ VIRA++A+YNNP RA EYL GIP+
Sbjct: 209 FHSAESTLVTGEEYQNMVTELMSLG---FPRDKVIRAMQASYNNPNRAAEYLVVGIPDPP 265
Query: 219 AVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLD 278
P G+ P + Q + + G ++P +L+
Sbjct: 266 PETP----------GDQPPSQPSLQSSQSSSQPGGESSP------------------SLE 297
Query: 279 FLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINE 331
FL QFQ LR + ++P +L LQ LG+ NP L+++I + Q +F+ LIN+
Sbjct: 298 FLDQLPQFQQLREAISSDPAMLSQFLQSLGQSNPQLLQIISQRQEEFIALINQ 350
>gi|225562098|gb|EEH10378.1| nucleotide excision repair protein RAD23 [Ajellomyces capsulatus
G186AR]
Length = 386
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 85/223 (38%), Positives = 113/223 (50%), Gaps = 38/223 (17%)
Query: 164 SNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE------- 216
S L+ G E V Q+ MG + R + RA+RAAY NP+RA+EYL +GIPE
Sbjct: 139 SALLMGPQGEQVVAQMESMG---FPRSDIDRAMRAAYFNPDRAIEYLLNGIPETTQAEHR 195
Query: 217 --------------QTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFP 262
TA PP A+ G + AQ A AP G
Sbjct: 196 EAAPAPPATTTPSGSTAAPPTT-AAVGDDEHINLFEAAAQ---AGAPQLGGAGRGARAAG 251
Query: 263 QGL--PNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQE 320
QGL P G N G LDFLR++ FQ LR +VQ PQ+L+P+LQ++G NP L +LI +
Sbjct: 252 QGLAPPAEGGNLG--NLDFLRSNPHFQQLRQLVQQQPQMLEPILQQVGAGNPQLAQLIGQ 309
Query: 321 HQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEEREAIE 363
+Q FL+L++E ++ QL Q +TVT EER+AIE
Sbjct: 310 NQDQFLQLLSEDIDDD-----AQLPPGTHQ-ITVTEEERDAIE 346
>gi|392576824|gb|EIW69954.1| hypothetical protein TREMEDRAFT_68394 [Tremella mesenterica DSM
1558]
Length = 379
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 66/175 (37%), Positives = 96/175 (54%), Gaps = 21/175 (12%)
Query: 160 GQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG-IPEQT 218
G ++S+ V G L+A + +++MG ++ + V+RALRA+YNNP+RAV+YL SG IPE
Sbjct: 130 GLSSSSFVTGPALQAAISSMVEMG---FEHDQVVRALRASYNNPDRAVDYLMSGNIPEVE 186
Query: 219 AVPPVARASAGGQAGNPPAQTQAQQPAAPAPT----------SGPNANPLDLFPQGLPNM 268
P A A A P AAP+ T SG + +LF +
Sbjct: 187 GPAPAATAPPTQTAPTIPTPA-----AAPSQTPAAPAAQPAPSGSAGSAENLFATVARDR 241
Query: 269 GSNAGAG--TLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEH 321
G++A A +L+ L NS Q Q LR MVQ NP ++ P+LQ++ NP L +LI +H
Sbjct: 242 GTSAPANVPSLEALGNSPQLQRLRQMVQQNPALIGPLLQQVAAHNPALAQLINQH 296
>gi|361129234|gb|EHL01146.1| putative UV excision repair protein rhp23 [Glarea lozoyensis 74030]
Length = 321
Score = 85.1 bits (209), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 79/228 (34%), Positives = 111/228 (48%), Gaps = 45/228 (19%)
Query: 163 ASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP---EQTA 219
+S L G+ A + ++ MG ++R + A+RAA+ N ERA+EYL +GIP +Q
Sbjct: 69 SSGLAMGAERAAQIAEMESMG---FERSQIDLAMRAAFFNSERAIEYLLTGIPENLQQEQ 125
Query: 220 VPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPN-----------M 268
P A ++ + PPA Q AA P DLF +
Sbjct: 126 RAPPAADASADTSDAPPAAED--QAAAGVPD--------DLFERARLGAAAGGGGGGSPF 175
Query: 269 GS------------NAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMR 316
GS G G LDFLRN+ QFQ LR +VQ NPQ+L+P+LQ++G NP L
Sbjct: 176 GSMGAGGAAGAGAAPGGLGNLDFLRNNAQFQQLRQVVQQNPQMLEPILQQVGAGNPQLAA 235
Query: 317 LIQEHQTDFLRLINEPVEGGEGNVLGQL-ASAMPQAVTVTPEEREAIE 363
LI +H FL+L++E +G+ L A ++VT ER AIE
Sbjct: 236 LIGQHPEQFLQLLSE-----DGDNDAPLPPGAQATQISVTEPERAAIE 278
>gi|84998362|ref|XP_953902.1| DNA repair protein (RAD23 ) [Theileria annulata]
gi|65304900|emb|CAI73225.1| DNA repair protein (RAD23 homologue), putative [Theileria annulata]
Length = 328
Score = 84.7 bits (208), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 71/243 (29%), Positives = 110/243 (45%), Gaps = 39/243 (16%)
Query: 122 PQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSD-VYGQAASNLVAGSNLEATVQQIL 180
P S P S P + P P P+ + VS+ Y +S V GS LE ++ +I
Sbjct: 85 PNSQPSSTTTPTSKPPQPPTQDDTPNQPSSGNVVSEQTYENVSSKFVMGSELEQSINRIC 144
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
+MG ++R V RA+ AA+NNP+RAVE+L +G N PA
Sbjct: 145 EMG---FERPLVERAMAAAFNNPDRAVEFLSTG--------------------NIPA--- 178
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQIL 300
++ PN N +L G AG L L++ F+ L V+++P +L
Sbjct: 179 ---------SNMPNINAQNL---ATAEHGDPAGDDVLQMLQSHPMFEQLIQAVRSDPNLL 226
Query: 301 QPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEERE 360
Q ML+ LG+ NP L++ I + Q +F+ L++ P +T+TP E E
Sbjct: 227 QQMLENLGQTNPELLQAIIQRQDEFVELLSSSARAAATADQYSTTENNPNIITLTPVEME 286
Query: 361 AIE 363
+I+
Sbjct: 287 SIQ 289
>gi|402588417|gb|EJW82350.1| UV excision repair protein Rad23 [Wuchereria bancrofti]
Length = 190
Score = 84.7 bits (208), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 74/221 (33%), Positives = 95/221 (42%), Gaps = 57/221 (25%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M V KT+ FEIE+ P + +VK I +G YP Q LI+ GKVL D T+E
Sbjct: 1 MLVTFKTIAQVSFEIELDPHLTIGEVKAKIAEEKGEVEYPTECQKLIYNGKVLDDAQTVE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E + + FVVVM+ + K
Sbjct: 61 EVMIDPSKFVVVMIARKK------------------------------------------ 78
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYG----QAASNLVAGSNLEATV 176
P AP + P P+ PA A A SV+D G Q L S E T
Sbjct: 79 -----PIGAPVESTPQPSNLQIPAGAQATTAPVSVAD-SGPSTPQNPDGLT--SEQEETA 130
Query: 177 QQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQ 217
Q I+ MG + R+ VIRALRA++ N +RAVEYL SGIPE+
Sbjct: 131 QAIVAMG---YPRDKVIRALRASFFNGDRAVEYLCSGIPEE 168
>gi|342320043|gb|EGU11986.1| Uv excision repair protein rhp23, putative [Rhodotorula glutinis
ATCC 204091]
Length = 403
Score = 84.3 bits (207), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 72/214 (33%), Positives = 109/214 (50%), Gaps = 23/214 (10%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+++ KTL+ F IE +P + V+D+KK I+ QG +PA Q +I GK+L D T+
Sbjct: 2 VRIQFKTLQQKQFFIEAEPTETVADLKKKIQADQG---FPAESQKIIFSGKILPDEKTVG 58
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E E F VVM+ K K + + A+ SAAP+ A + + + + P
Sbjct: 59 EANFKEKDFCVVMVAKPKAAPASAAATSAAPSTPAAAPAPPQTPAQPASAPASAPNAPGP 118
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
S +A PAPA A PA A++ ++GS LE ++ +++
Sbjct: 119 AAPSSAPAATEAETPAPA-------ANQPAD----------EATSFISGSALETSISEMV 161
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGI 214
MG + RE V RA+RA++NNP RAVEYL +GI
Sbjct: 162 AMG---FPREQVQRAMRASFNNPHRAVEYLMTGI 192
>gi|298707279|emb|CBJ25906.1| UV excision repair protein RAD23B homolog [Ectocarpus siliculosus]
Length = 466
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 98/333 (29%), Positives = 140/333 (42%), Gaps = 100/333 (30%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+K+ VKT+KG F+IEV+ V +VK IE +PA+Q LIH G++LKD TL
Sbjct: 2 VKLTVKTIKGKKFQIEVEQTQTVREVKGVIEEQNAE--FPAAQLKLIHSGQILKDECTLA 59
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E K+ E F+V M+TK K +
Sbjct: 60 EYKIKEEEFLVCMVTKPKPA---------------------------------------- 79
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
A PAAPAPAP+PAPA A A + + A + V+Q+
Sbjct: 80 --------AAAPAAPAPAPSPAPATAAAAPAAAPAAPAVPAAPN--------ADHVRQLT 123
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
+MG + + V ALRAA NP+ AVE+L +GIP+ +A G
Sbjct: 124 EMG---FPEDQVTAALRAAMGNPDVAVEFLMTGIPDNIQAAAAPAQAAAAPTG------- 173
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQIL 300
TL+ R QF L+ +VQ +P L
Sbjct: 174 --------------------------------AMETLEDFRGHPQFNELKRLVQRDPTQL 201
Query: 301 QPMLQELGKQNPHLMRLIQEHQTDFLRLINEPV 333
+LQ +G+Q+P+L+ I E+Q DF+ L+NEP+
Sbjct: 202 SSILQMIGRQSPNLLARIHENQGDFIALMNEPI 234
>gi|45198876|ref|NP_985905.1| AFR358Wp [Ashbya gossypii ATCC 10895]
gi|44984905|gb|AAS53729.1| AFR358Wp [Ashbya gossypii ATCC 10895]
gi|374109136|gb|AEY98042.1| FAFR358Wp [Ashbya gossypii FDAG1]
Length = 413
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 94/362 (25%), Positives = 150/362 (41%), Gaps = 68/362 (18%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+ + K K +++ P +++ K+ + + D SQ +I GKVL+D TLE
Sbjct: 3 ITIHFKDFKKERLPLQLSPSATIAEAKQMLARAKQCD---ESQLKMIFSGKVLQDGNTLE 59
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
K+ + V+ M++K K A+T S P +++P+ Q+ A T
Sbjct: 60 GCKLKDGDQVIFMISKKK----------------AETRVSEPEPASEPSGGPQSEAST-- 101
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P + A P A V S ++ V GS TV++I+
Sbjct: 102 ---------GLETVTTPGVSAAVDPESTGAAVGS--------GASFVTGSARSQTVERIM 144
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE--QTAVPPVARASAG-GQAGNPPA 237
+MG +DR V ALRAA+NNP+RAVEYL +GIPE Q + AR SA +G P
Sbjct: 145 EMG---YDRAQVEMALRAAFNNPDRAVEYLLTGIPEHLQNSSAFSARQSASVAASGVPET 201
Query: 238 QTQAQ---------QPAAPAPTSGPNANPLDLFPQGLPNMGSN-----AGAGTLDFLRNS 283
AQ + + + + DLF Q N T ++S
Sbjct: 202 GATAQTGTETETGTGTGTASEVNDEHVHEDDLFAQAAAVGSENPTTGADATTTGTVSQDS 261
Query: 284 QQFQA----------LRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPV 333
Q LR ++ +P+ L P+L+ L ++ P L I + F+ ++ + V
Sbjct: 262 SPLQTIGLTFEDLVQLRGVINGDPEALPPLLESLSERYPELREQIMSNPEMFISMLLQAV 321
Query: 334 EG 335
G
Sbjct: 322 GG 323
>gi|452985526|gb|EME85282.1| hypothetical protein MYCFIDRAFT_119289, partial [Pseudocercospora
fijiensis CIRAD86]
Length = 390
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 71/217 (32%), Positives = 106/217 (48%), Gaps = 34/217 (15%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ K LK F++E +P D + VK+ I +G + S Q LI+ GK+L+D T+E
Sbjct: 1 MKLTFKDLKQAKFQVEAEPTDTIGSVKEKISKEKG---WEPSTQKLIYSGKILQDDNTIE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTS-TQPTTTSQTPAPTV 119
K+ E F+V M +K K APP+ P T +++ A T
Sbjct: 58 SYKIEEKGFIVCMTSKPK----------------------APPSKPADPATPAKSVASTP 95
Query: 120 APPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQI 179
APP + + A A+ APA + A V++ +D S L G A + +
Sbjct: 96 APPAAPAQFATSAASQAPATPSPAPASTASGDVATFND-----PSALAMGEQRAAAIANM 150
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE 216
MG + R+ + A+RAA+ NP+RAVEYL +GIPE
Sbjct: 151 EAMG---FPRDQIDAAMRAAFFNPDRAVEYLLNGIPE 184
>gi|336371729|gb|EGO00069.1| hypothetical protein SERLA73DRAFT_167911 [Serpula lacrymans var.
lacrymans S7.3]
Length = 380
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 75/214 (35%), Positives = 108/214 (50%), Gaps = 22/214 (10%)
Query: 164 SNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQT-AVPP 222
++ V G L TV+ +++MG ++RE V+RALRA+YNNP+RAVEYL++GIP A
Sbjct: 135 NSFVTGEVLNTTVRNMMEMG---FEREQVMRALRASYNNPDRAVEYLFNGIPAHLEAEAA 191
Query: 223 VARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLF---------PQGLPNMGSN-- 271
A A A AP P P P +LF QG G+N
Sbjct: 192 GPAAPPAQPPAGGGAAPAAAPAPAPQPAVPPPNQPQNLFQLAQQQQQQQQGPATGGANPF 251
Query: 272 AGAGTLDF--LRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLI 329
GAG +D LR++ Q Q LR +V ANPQ+ QP++Q+L NP ++ ++ ++L+
Sbjct: 252 GGAGPIDMAALRDNPQVQHLRELVAANPQLAQPIIQQLAASNPQFAQMFAQNPEALMQLL 311
Query: 330 NEPVEGGEGNVLGQLASAMPQAVTVTPEEREAIE 363
+G Q + VTPEE+ AIE
Sbjct: 312 -----MNQGEGGEGGLPPGAQYINVTPEEQAAIE 340
>gi|156837209|ref|XP_001642636.1| hypothetical protein Kpol_370p6 [Vanderwaltozyma polyspora DSM
70294]
gi|156113188|gb|EDO14778.1| hypothetical protein Kpol_370p6 [Vanderwaltozyma polyspora DSM
70294]
Length = 404
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 89/341 (26%), Positives = 139/341 (40%), Gaps = 53/341 (15%)
Query: 23 VSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSSS 82
V D KK I + + SQ LI+ GKVL++ +T+ + + + V+ M++K K S+
Sbjct: 24 VLDAKKQIAVKKDCE---DSQIKLIYSGKVLQNDSTIGDCGLKDGDQVIFMISKKK--ST 78
Query: 83 GASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPAPA 142
G A P + ++ + Q TVA Q+ + A P A
Sbjct: 79 GTKVTEATPVAASTAADASATSVAAVAEPEQ---QTVASEQATESNGNEEA---PQQEEA 132
Query: 143 PAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNN 202
P V SD V GS V++I++MG ++R+ V RA+RAA+NN
Sbjct: 133 PQQGGQQEQVQVQSD------EGFVVGSQRNEAVERIMEMG---YERDEVNRAMRAAFNN 183
Query: 203 PERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGP---NANPLD 259
P+RAVEYL GIPE + ++ + A T+ + +D
Sbjct: 184 PDRAVEYLLMGIPEHLQQQEQQQEQQ------QEQHVESTEVATTEETNDNEDVDNGEVD 237
Query: 260 LFPQGLPNMGSNA-----------------GAGTLDFLRNSQQFQALRTMVQANPQILQP 302
LF Q G ++ G D L ALR +V NP+ L P
Sbjct: 238 LFTQAAQGNGDSSAAPRGAAGAAGGPPGSIGLTMEDLL-------ALRQVVAGNPEALAP 290
Query: 303 MLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQ 343
+L+ L + P L I + F+ ++ E V V+G+
Sbjct: 291 LLENLSIRYPQLREQILANPEVFVSMLLEAVGDNLQGVMGE 331
>gi|157126297|ref|XP_001654581.1| uv excision repair protein rad23 [Aedes aegypti]
gi|108882553|gb|EAT46778.1| AAEL002077-PA [Aedes aegypti]
Length = 347
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 94/359 (26%), Positives = 138/359 (38%), Gaps = 65/359 (18%)
Query: 1 MKVFVKTLKGTHFEIEVKPE-DKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTL 59
MK+ +KTLK F+IEV E D V +K+ D YP +Q LI+ GK+++D L
Sbjct: 1 MKITIKTLKQEAFQIEVDVEKDTVRTLKEKFFQESKQD-YPVERQRLIYLGKIMEDDLPL 59
Query: 60 EENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTV 119
+ + FVVVM N+ TT+ A P ++ T +
Sbjct: 60 SHYSLDDKKFVVVM-------------------NKKPTTAPAEPAASSSATAPAESKSST 100
Query: 120 APPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQI 179
A ES A A A +++ VQ+I
Sbjct: 101 AK----SESGAQSEATAAASKAPEEKPKEQEKKEEEEKPKEDKKPEEPPQDDIQIKVQRI 156
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 239
+MG + E AL NNP+RAVEYL S I + +GG + T
Sbjct: 157 TEMG---YSLEEARIALEICDNNPDRAVEYLLSEIATSSMGGGGGGGGSGGGSAAVSGGT 213
Query: 240 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQI 299
+ A FLR F ++ ++Q +P +
Sbjct: 214 TQESRLA--------------------------------FLREHPTFLEMKRLLQEDPSL 241
Query: 300 LQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNV-----LGQLASAMPQAVT 353
L +LQ++ NP LMR+I E+Q +FL LINE E G + L A+AM ++T
Sbjct: 242 LPHLLQKIQSSNPDLMRIISENQVEFLSLINEGTEEPTGRMGVPRELETTAAAMVDSLT 300
>gi|320041049|gb|EFW22982.1| UV excision repair protein [Coccidioides posadasii str. Silveira]
gi|392865203|gb|EAS30978.2| UV excision repair protein Rad23 [Coccidioides immitis RS]
Length = 371
Score = 81.3 bits (199), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 72/211 (34%), Positives = 111/211 (52%), Gaps = 23/211 (10%)
Query: 164 SNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQ------ 217
S L+ G E VQQ+ MG + R+ + RA+RAA+ NP+RA+EYL SGIP+
Sbjct: 133 SALLMGPQSETAVQQMEAMG---FARDDIQRAMRAAFFNPDRAIEYLLSGIPDHAEQEAA 189
Query: 218 --TAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAG 275
A +A + P A T++++P + A + G
Sbjct: 190 RQQARATAPSNAAAPASTQPAANTESEEPVNLFEAAAQAAQGGGGARGTRGGATTGEGLN 249
Query: 276 TLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEG 335
L+FLRN+ FQ LR +VQ PQ+L+P+LQ++G NP L +LI ++Q FL+L++E ++
Sbjct: 250 NLEFLRNNPHFQQLRQLVQQQPQMLEPILQQVGAGNPQLAQLIGQNQEQFLQLLSEDIDD 309
Query: 336 GEGNVLGQLASAMP---QAVTVTPEEREAIE 363
+ +P A++VT EER+AIE
Sbjct: 310 D---------AQLPPGAHAISVTEEERDAIE 331
>gi|303319113|ref|XP_003069556.1| UV excision repair protein rhp23, putative [Coccidioides posadasii
C735 delta SOWgp]
gi|240109242|gb|EER27411.1| UV excision repair protein rhp23, putative [Coccidioides posadasii
C735 delta SOWgp]
Length = 371
Score = 81.3 bits (199), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 72/211 (34%), Positives = 111/211 (52%), Gaps = 23/211 (10%)
Query: 164 SNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQ------ 217
S L+ G E VQQ+ MG + R+ + RA+RAA+ NP+RA+EYL SGIP+
Sbjct: 133 SALLMGPQSETAVQQMEAMG---FARDDIQRAMRAAFFNPDRAIEYLLSGIPDHAEQEAA 189
Query: 218 --TAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAG 275
A +A + P A T++++P + A + G
Sbjct: 190 RQQARATAPSNAAAPASTQPAANTESEEPVNLFEAAAQAAQGGGGARGTRGGATTGEGLN 249
Query: 276 TLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEG 335
L+FLRN+ FQ LR +VQ PQ+L+P+LQ++G NP L +LI ++Q FL+L++E ++
Sbjct: 250 NLEFLRNNPHFQQLRQLVQQQPQMLEPILQQVGAGNPQLAQLIGQNQEQFLQLLSEDIDD 309
Query: 336 GEGNVLGQLASAMP---QAVTVTPEEREAIE 363
+ +P A++VT EER+AIE
Sbjct: 310 D---------AQLPPGAHAISVTEEERDAIE 331
>gi|426197465|gb|EKV47392.1| hypothetical protein AGABI2DRAFT_192582 [Agaricus bisporus var.
bisporus H97]
Length = 404
Score = 81.3 bits (199), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 74/239 (30%), Positives = 106/239 (44%), Gaps = 57/239 (23%)
Query: 164 SNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPV 223
S + G+ L+ T+Q +++MG +DRE V+RALRA+YNNP+RAVEYL +GIP
Sbjct: 145 SGFLTGAALQTTIQNMMEMG---FDREQVLRALRASYNNPDRAVEYLMTGIP-------- 193
Query: 224 ARASAGGQAGNPPAQTQAQQ--PAAPAPTSGPNANPLDLF-----------------PQG 264
A +A PP + Q PAAP S P +N PQ
Sbjct: 194 --AHLEAEAAGPPRTSSTTQSNPAAP---SAPQSNSPAAPAPAPATAPAAAAPPANQPQN 248
Query: 265 LPNMGSNAGAGT---------------------LDFLRNSQQFQALRTMVQANPQILQPM 303
L + G L L + Q Q LR +V+ NP ++QP+
Sbjct: 249 LFQLAQQQQTGGGGGAAAGMGGMGGMGGMGAPDLAALAANPQIQQLREIVRQNPALIQPL 308
Query: 304 LQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEEREAI 362
+Q+L QNP + + + + L+L+ EG Q ++VT EEREAI
Sbjct: 309 IQQLAAQNPQMAQALAANPDMLLQLLGAGEGDEEGGP-EGEVPPGAQVISVTVEEREAI 366
>gi|254583708|ref|XP_002497422.1| ZYRO0F05192p [Zygosaccharomyces rouxii]
gi|238940315|emb|CAR28489.1| ZYRO0F05192p [Zygosaccharomyces rouxii]
Length = 384
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 94/351 (26%), Positives = 144/351 (41%), Gaps = 63/351 (17%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+ + K K +E+ P V D K + T + + SQ LI+ GKVL+D L+
Sbjct: 2 INIIFKDFKKEKISLELDPSSSVKDAKVRLATEKSCE---ESQIKLIYSGKVLQDAKNLQ 58
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E+ + + V+ M++K K ++ A+ + A A+ + + SA TT ++T A A
Sbjct: 59 ESGLKDGDQVIFMISKKKAATPSAAAATPASASVTEPSQSA-------TTNTETQAAGSA 111
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
+ A P AP P + V G TV +I+
Sbjct: 112 AETTATAPAQPSTTQAPVSTP-----------------------DFVVGQQRNETVDRIM 148
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
+MG ++R+ V RALRAA+NNP+RAVEYL GIPE AG + P Q Q
Sbjct: 149 EMG---YERDQVERALRAAFNNPDRAVEYLLMGIPENL-------QRAGARQQQPEQQAQ 198
Query: 241 AQQPAAPAPTSGPNANPL---DLFPQGLPNMGSNAGA---------------GTLDFLRN 282
+ P DLF Q N + G++
Sbjct: 199 QESQPQQESQPQQATEPQEGEDLFAQAEQRTQGNTASAEGAAAADGAQGGVPGSIGL--T 256
Query: 283 SQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPV 333
+ ALR +V NP+ L P+L+ L + P L I + F+ ++ E V
Sbjct: 257 MEDLLALRQVVSGNPEALAPLLESLSSRYPQLREQIMSNPEVFVSMLLEAV 307
>gi|119182327|ref|XP_001242306.1| hypothetical protein CIMG_06202 [Coccidioides immitis RS]
Length = 418
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 72/211 (34%), Positives = 111/211 (52%), Gaps = 23/211 (10%)
Query: 164 SNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQT----- 218
S L+ G E VQQ+ MG + R+ + RA+RAA+ NP+RA+EYL SGIP+
Sbjct: 180 SALLMGPQSETAVQQMEAMG---FARDDIQRAMRAAFFNPDRAIEYLLSGIPDHAEQEAA 236
Query: 219 ---AVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAG 275
A +A + P A T++++P + A + G
Sbjct: 237 RQQARATAPSNAAAPASTQPAANTESEEPVNLFEAAAQAAQGGGGARGTRGGATTGEGLN 296
Query: 276 TLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEG 335
L+FLRN+ FQ LR +VQ PQ+L+P+LQ++G NP L +LI ++Q FL+L++E ++
Sbjct: 297 NLEFLRNNPHFQQLRQLVQQQPQMLEPILQQVGAGNPQLAQLIGQNQEQFLQLLSEDIDD 356
Query: 336 GEGNVLGQLASAMP---QAVTVTPEEREAIE 363
+ +P A++VT EER+AIE
Sbjct: 357 D---------AQLPPGAHAISVTEEERDAIE 378
>gi|366995773|ref|XP_003677650.1| hypothetical protein NCAS_0G04120 [Naumovozyma castellii CBS 4309]
gi|342303519|emb|CCC71299.1| hypothetical protein NCAS_0G04120 [Naumovozyma castellii CBS 4309]
Length = 392
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 91/307 (29%), Positives = 139/307 (45%), Gaps = 52/307 (16%)
Query: 42 SQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSA 101
SQ LI+ GKVL+D TLE+ + + V+ M++K K +++ + ++ A TT++
Sbjct: 40 SQIKLIYSGKVLQDAKTLEDCGLKDGDQVIFMISKKKSTTTKVTEAPSSTTATAPTTTTN 99
Query: 102 PPTSTQPTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQ 161
T+T + PAA + PA PA A +S +
Sbjct: 100 SATNTPAEVS--------------------PAAASETPAQLPATTEAAPATTSSGETSSA 139
Query: 162 AASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP 221
++ V GS + TV++I++MG ++RE V ALRAA+NNP+RAVEYL GIPE
Sbjct: 140 GSAGFVVGSQRDQTVERIMEMG---YEREQVESALRAAFNNPDRAVEYLLMGIPENLQ-- 194
Query: 222 PVARASAGGQAGNPP-----AQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGT 276
ARA+A + P T A APA DLF Q GSN G T
Sbjct: 195 --ARAAAPQETAAPSITQDVTTTTASTEDAPAEE--------DLFAQAA--QGSNTGPNT 242
Query: 277 LDFLRNS----------QQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFL 326
+ Q +LR ++ NP+ L +L+ L + P+L + + F+
Sbjct: 243 EGESEHHGPPGSIGLTVQDLLSLRQVISGNPEALTSLLESLSVRYPNLREQMMNNPQAFI 302
Query: 327 RLINEPV 333
++ E V
Sbjct: 303 SMLLEAV 309
>gi|62362186|gb|AAX81530.1| RAD23B-like protein [Adineta ricciae]
Length = 244
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 87/300 (29%), Positives = 129/300 (43%), Gaps = 56/300 (18%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++ +KTL F IE + D V +K+ I D Y A LI GK+L+D TLE
Sbjct: 1 MQLQIKTLSNEKFAIECELSDTVRTIKEKIAAKDLKDKYEADAVKLIFSGKILEDSKTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ +SF+VV+ +G++ +AAP+N + S+ T T T T AP
Sbjct: 61 FYSITSDSFLVVVKQAPTKPQAGSAAAAAAPSNPSGAASAQTRTPTVATPTPAPAAPQQQ 120
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P + PAPA PA + S ++ + E ++++
Sbjct: 121 PTR---------------PAPASGTTPAASQDS------------FLSAESREKALRELT 153
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
DMG +DR ALRA++ + ERA EYL +G +P ++ S A NP +
Sbjct: 154 DMG---FDRAQAELALRASFYHVERAAEYLITG-----NIPNISEPS----AANPEGGS- 200
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQIL 300
Q P+ ++G G G L L S QFQALR ++Q NP L
Sbjct: 201 GQTPSGSESSTG----------------GRRGGEDDLVELSQSPQFQALRQLIQQNPDQL 244
>gi|323355384|gb|EGA87208.1| Rad23p [Saccharomyces cerevisiae VL3]
Length = 335
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 70/236 (29%), Positives = 105/236 (44%), Gaps = 55/236 (23%)
Query: 166 LVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVAR 225
V G+ T+++I++MG + RE V RALRAA+NNP+RAVEYL GIPE P +
Sbjct: 79 FVVGTERNETIERIMEMG---YQREEVERALRAAFNNPDRAVEYLLMGIPENLRQPEPQQ 135
Query: 226 ASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNS-- 283
+A A T A+QPA DLF Q G NA +G L +
Sbjct: 136 QTAAAAEQPSTAATTAEQPAED-----------DLFAQAA--QGGNASSGALGTTGGATD 182
Query: 284 --------------QQFQALRTMVQANPQILQPMLQELGKQNPH---------------L 314
+ +LR +V NP+ L P+L+ + + P L
Sbjct: 183 AAQGGPPGSIGLTVEDLLSLRQVVSGNPEALAPLLENISARYPQLREHIMANPEVFVSML 242
Query: 315 MRLIQEHQTDFLRLINEPVEGGEGNVLGQLASA-MPQA-------VTVTPEEREAI 362
+ + ++ D + ++ VEG + V G+ A+A + Q V TPE+ +AI
Sbjct: 243 LEAVGDNMQDVMEGADDMVEGEDIEVTGEAAAAGLGQGEGEGSFQVDYTPEDDQAI 298
>gi|340054316|emb|CCC48612.1| putative UV excision repair RAD23 protein, fragment, partial
[Trypanosoma vivax Y486]
Length = 299
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 86/340 (25%), Positives = 140/340 (41%), Gaps = 58/340 (17%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V +K + G E EV E V D+KK +E D Y + + +VL+D T+E
Sbjct: 1 MRVILKGIDGIKHEYEVAAEATVHDIKKLME-----DEYTLESLRICYDNRVLEDSMTME 55
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ + + +V + K + + +T A ++ SA S Q S +
Sbjct: 56 GLGMRDRTVLVFVGRKHEKKTMSTATDVATKPSEGSARVSASSQSGQVNVESVPQSTATE 115
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
PQSV + PP+A + P ++ G + A + ++
Sbjct: 116 VPQSVAHN--PPSASSTETNP------------------------MLRGVD-PALIDTVV 148
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
MG DR V ALRAAY N +RAVE+L SGIP + P
Sbjct: 149 SMG--FEDRTQVALALRAAYMNVDRAVEFLCSGIPSNVE-----------RDLGPVFHDD 195
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQIL 300
+Q P P+S A P + +G+ L +F+ +R +V+ANPQ +
Sbjct: 196 SQHGMFPIPSSMAPAAPTE-----------GSGSALEQALMAVPRFEEIREIVRANPQAI 244
Query: 301 QPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNV 340
+Q+L P + RL+Q++ +F ++ G G+V
Sbjct: 245 ASAVQQLQLHYPDIARLVQQNPQEFATIMLR--HGAAGHV 282
>gi|297811745|ref|XP_002873756.1| hypothetical protein ARALYDRAFT_326056 [Arabidopsis lyrata subsp.
lyrata]
gi|297319593|gb|EFH50015.1| hypothetical protein ARALYDRAFT_326056 [Arabidopsis lyrata subsp.
lyrata]
Length = 134
Score = 78.6 bits (192), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 39/61 (63%), Positives = 46/61 (75%), Gaps = 5/61 (8%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKGT FEIEVKP D KNIETV G+ YPA+QQ+LIH+GK L+D T+E
Sbjct: 1 MKIIVKTLKGTRFEIEVKPNDS-----KNIETVLGASEYPAAQQILIHKGKKLRDEATME 55
Query: 61 E 61
E
Sbjct: 56 E 56
>gi|255712183|ref|XP_002552374.1| KLTH0C03410p [Lachancea thermotolerans]
gi|238933753|emb|CAR21936.1| KLTH0C03410p [Lachancea thermotolerans CBS 6340]
Length = 391
Score = 78.2 bits (191), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 60/180 (33%), Positives = 85/180 (47%), Gaps = 15/180 (8%)
Query: 166 LVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQ----TAVP 221
V GS + TVQ+I++MG +DRE V RALRAA+NNP+RAVEYL GIPE
Sbjct: 135 FVTGSRRDETVQRIMEMG---YDREQVERALRAAFNNPDRAVEYLLMGIPEHLQQTQQPQ 191
Query: 222 PVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGA------G 275
+ Q P ++ + P A+ DLF Q + G G G
Sbjct: 192 QQQQQQQQQQQQPEPQAQESHETQQPQEHEEQQASSDDLFAQAAASAGGEEGGDSARAPG 251
Query: 276 TLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEG 335
T+ + +LR +V NP+ L P+L+ L + P L I + F+ ++ E V G
Sbjct: 252 TIGL--TMEDLLSLRQVVTGNPEALPPLLESLSTRYPELREQIMTNPEMFISMLLEAVGG 309
>gi|189195060|ref|XP_001933868.1| DNA repair protein RAD23-like protein [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187979747|gb|EDU46373.1| DNA repair protein RAD23-like protein [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 382
Score = 78.2 bits (191), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 81/223 (36%), Positives = 113/223 (50%), Gaps = 37/223 (16%)
Query: 164 SNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPV 223
S L G EA + + MG + R + RA+RAA+ NP+RAVEYL +GIPE
Sbjct: 134 SALTMGGEREAAIANMESMG---FARADIDRAMRAAFFNPDRAVEYLLTGIPESALQEQA 190
Query: 224 ARASAGGQAG-NPPAQTQAQQPAAPAPTSGPNANPLDLF-----------PQGLPNMGSN 271
+A A P T A A AP+ P++LF P G GS
Sbjct: 191 QQAQARAPTSPTPAGNTGATATPANAPSGADE--PMNLFEAAAQAANRDRPSGGQRGGSA 248
Query: 272 AGA--------GTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQT 323
GA +LDFLRN+ QFQ LR +VQ PQ+L+P+LQ++G NP L ++I ++
Sbjct: 249 PGATGGAALNANSLDFLRNNPQFQQLRQVVQQQPQMLEPILQQVGAGNPQLAQMIAQNPE 308
Query: 324 DFLRLINEPVEGGEGNVLGQLASAMP---QAVTVTPEEREAIE 363
FL+L+ E + + +P QA++VT +EREAIE
Sbjct: 309 QFLQLLAEDADED---------APLPPGAQAISVTEDEREAIE 342
>gi|145538419|ref|XP_001454915.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124422692|emb|CAK87518.1| unnamed protein product [Paramecium tetraurelia]
Length = 331
Score = 77.8 bits (190), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 60/214 (28%), Positives = 91/214 (42%), Gaps = 52/214 (24%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ +KTL G F+IEV+P + V ++K+ IE + + +QQ L+ +G +L++ T+
Sbjct: 1 MKIIIKTLSGQTFDIEVQPTETVLNIKEKIEQ---NKQFEIAQQKLLRKGTLLQNEQTVA 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E + E F+VVM+ K Q P Q
Sbjct: 58 ELGLQEKDFLVVMVNVKKGPPQQQPVQQQVQQPPQQPQPVQPQQPIQ------------- 104
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
A P APAP N+V GS +A +Q ++
Sbjct: 105 ---------------------AFKPVVAPAP------------QNMVTGSEYDAAIQNLI 131
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGI 214
MG + E A++AAYNNP+RA+EYL +GI
Sbjct: 132 QMGFAKSECEA---AMKAAYNNPDRAIEYLLNGI 162
>gi|255943815|ref|XP_002562675.1| Pc20g01150 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211587410|emb|CAP85444.1| Pc20g01150 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 380
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 115/382 (30%), Positives = 164/382 (42%), Gaps = 60/382 (15%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ K LK F I+V+P + V +VK I +G Y A + +I+ GK+L+D T+E
Sbjct: 1 MKLTFKDLKQEKFVIDVEPSETVREVKVKIAQEKGE--YEAERMKVIYSGKILQDDKTVE 58
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ E F+V + +K P A T SS P+ TPA
Sbjct: 59 SYNIQEKDFLVCLPSKQ-------------PKAAASTASSQVPS---------TPAARAP 96
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
AP AA P P+PA A + S S L G E V Q+
Sbjct: 97 VSTPAAPPAPHAAAAPPPSVAPATPSPAGAAPAPSSGPAFGDPSALTMGPAAEGAVVQME 156
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
MG + R + RA+RAA+ NP+RA+EYL +GIP+ + A
Sbjct: 157 AMG---FARTDIDRAMRAAFYNPDRAIEYLLTGIPDNIQEQQQQQQQAS------ETAPT 207
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAG----------------TLDFLRNSQ 284
PAAPA SG + L+LF G +L+FLR++
Sbjct: 208 GAAPAAPAAPSGGDEPHLNLFEAAAQAGGEGGRPRGAAGAGAGAAGGEALGSLEFLRSNP 267
Query: 285 QFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQL 344
FQ LR +VQ P +L+P+LQ++ NP + +I ++ F G L
Sbjct: 268 HFQQLRQLVQQQPHMLEPILQQVAAGNPQIASIIGQNSDQF--------LQLLGEELEDE 319
Query: 345 ASAMP---QAVTVTPEEREAIE 363
A+P QA++VT EER+AIE
Sbjct: 320 EGALPPGAQAISVTEEERDAIE 341
>gi|340522496|gb|EGR52729.1| hypothetical protein TRIREDRAFT_102581 [Trichoderma reesei QM6a]
Length = 341
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 113/381 (29%), Positives = 158/381 (41%), Gaps = 100/381 (26%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV + LK F ++V+P DK+ LKD T++
Sbjct: 1 MKVTFRDLKQQKFVLDVEPTDKI-----------------------------LKDDDTVQ 31
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ E FVV M+ K K + + A+ + PA A +++ P + S T A
Sbjct: 32 SYNIEEKGFVVCMVNKPKPAPAAAAAAAPPPATPAPPAAASTPAAPPAPAQSATQAAAPP 91
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
+ S P+ A A A A N+EA
Sbjct: 92 ATPTPNRSTGTPSGLAMGSERAEAIA------------------------NMEA------ 121
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQT------------AVPPVARASA 228
MG ++R + A+RAA+NNP+RAVEYL +GIPE P A A
Sbjct: 122 -MG---FERTQIEAAMRAAFNNPDRAVEYLLTGIPESIQQEQQQQRANPPQAAPAAAAPT 177
Query: 229 GGQAGNPPA-QTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQ 287
G G+ AQ+ APA P A QG G LDFLR++ QFQ
Sbjct: 178 GDDDGSVNLFDLAAQRRGAPASGGSPAAATAAAAAQG--------DLGNLDFLRHNAQFQ 229
Query: 288 ALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASA 347
LR +VQ PQ+L+P+LQ+LG NP L +LI + FL+L+ E +
Sbjct: 230 QLRQVVQQQPQMLEPILQQLGAGNPQLAQLIASNPDQFLQLLGEDAD-----------DD 278
Query: 348 MP-----QAVTVTPEEREAIE 363
+P QA++VT EER+AIE
Sbjct: 279 VPLPPGAQAISVTEEERDAIE 299
>gi|340505565|gb|EGR31882.1| uv excision repair protein, putative [Ichthyophthirius multifiliis]
Length = 395
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 67/210 (31%), Positives = 98/210 (46%), Gaps = 40/210 (19%)
Query: 163 ASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG-IPEQTAVP 221
AS++V G+ LEA + I MG ++R VI+AL+AAYNNPERAVEYL SG IP + A
Sbjct: 122 ASDMVMGAELEAKIADIESMG---FERSKVIQALKAAYNNPERAVEYLLSGHIPSRPAFE 178
Query: 222 PVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLR 281
+ Q G + N+G G L L
Sbjct: 179 QPPQQPQQPQQGGVLGEEGV------------------------GNLG---GLEELQQLA 211
Query: 282 NSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVL 341
+ QFQ + ++ NP +LQP++ +L + NP L L+Q++ FL+L+ + GGE +
Sbjct: 212 QNPQFQQIAMAIRQNPALLQPIMLQLAQSNPQLATLLQQNPQAFLQLLMQAT-GGEQCIF 270
Query: 342 GQ--------LASAMPQAVTVTPEEREAIE 363
A+ VTPEE+ I+
Sbjct: 271 FDNVILIFFFFVEVSRNAIQVTPEEKADID 300
>gi|385306094|gb|EIF50024.1| rad23p [Dekkera bruxellensis AWRI1499]
Length = 421
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 66/216 (30%), Positives = 90/216 (41%), Gaps = 32/216 (14%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV K K F IEV+P D + K+ + Q D P Q ++ GK+LKD T E
Sbjct: 1 MKVIFKNFKKEKFPIEVEPSDSILSGKEKLSAAQ--DCQPG-QLKFVYSGKILKDDKTFE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
V + ++ M +K + S P +AQ S+
Sbjct: 58 FFNVKDGDQIIFMKSKLRKQKS-----KPEPKPEAQAXXGXAEXSS-------------- 98
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
E+A ++ PA A SS S G + VQ I+
Sbjct: 99 ------ENAAVESSSTSNXXSXPAQIXAENQESSTG-AXEFTESTFAIGRARQTAVQNIM 151
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE 216
MG ++RE V RAL AA+NNP+RAVEYL +GIPE
Sbjct: 152 GMG---FEREQVERALTAAFNNPDRAVEYLLNGIPE 184
>gi|429853552|gb|ELA28621.1| nucleotide excision repair protein rad23 [Colletotrichum
gloeosporioides Nara gc5]
Length = 354
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 65/216 (30%), Positives = 91/216 (42%), Gaps = 31/216 (14%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV K LK F ++V+P D +S VK+ I +G D P Q+ LI+ GK+LKD T+E
Sbjct: 1 MKVTFKDLKQQKFTLDVEPTDLISAVKQKIAGEKGWD--PKDQK-LIYSGKILKDDDTVE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
K+ E FVV M+ K K + S+
Sbjct: 58 SYKIEEKGFVVCMVNKPKAPKPAPAESSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 117
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P S A + P+ A G ++A N+EA
Sbjct: 118 XXXXAPRSTGGGDAASNDPSMA----------------MGAQRQEVIA--NMEA------ 153
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE 216
MG ++R + A+RAA+ NP+RAVEYL +GIPE
Sbjct: 154 -MG---FERSQIDAAMRAAFYNPDRAVEYLLNGIPE 185
>gi|357504261|ref|XP_003622419.1| hypothetical protein MTR_7g037380 [Medicago truncatula]
gi|355497434|gb|AES78637.1| hypothetical protein MTR_7g037380 [Medicago truncatula]
Length = 176
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/65 (53%), Positives = 45/65 (69%)
Query: 22 KVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSS 81
++ DVK NIE +Q D YP QQ+LIH GKVLKD TTL +N+V+E+ F+VVML+K S
Sbjct: 76 EIMDVKTNIEDIQEKDNYPCRQQLLIHNGKVLKDETTLADNEVSEDGFLVVMLSKVNNRS 135
Query: 82 SGAST 86
G
Sbjct: 136 MGGEC 140
>gi|255724082|ref|XP_002546970.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
gi|240134861|gb|EER34415.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
Length = 335
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 82/182 (45%), Gaps = 24/182 (13%)
Query: 164 SNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGI------PEQ 217
S G+ EAT+Q I++MG ++R V ALRAA+NNP RAVEYL +GI PEQ
Sbjct: 81 STFAVGTEREATIQNIMEMG---YERSQVEAALRAAFNNPHRAVEYLLTGIPESLQRPEQ 137
Query: 218 TAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTL 277
P A + G + + G + N LF + G
Sbjct: 138 PVAPVAPVAQSEAPVGESTTTSAHDEEDDDEHEGGQHEN---LFEAAAAAAAAQEGGAHA 194
Query: 278 DFLR------------NSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDF 325
+ QQ Q LR +Q+NP+++QP+L++L NP + LIQ+ F
Sbjct: 195 ATAGGDAASAGGAGLGDDQQMQLLRAALQSNPELIQPLLEQLAASNPQIASLIQQDPEAF 254
Query: 326 LR 327
+R
Sbjct: 255 IR 256
>gi|195108433|ref|XP_001998797.1| GI24165 [Drosophila mojavensis]
gi|193915391|gb|EDW14258.1| GI24165 [Drosophila mojavensis]
Length = 299
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 87/369 (23%), Positives = 140/369 (37%), Gaps = 115/369 (31%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDV------YPASQQMLIHQGKVLK 54
MK+ ++TL +E+K D K+N+ ++ V P LI+ G++++
Sbjct: 1 MKLTIRTLDQKTISLELK------DDKQNVLHLKQRLVELPEISQPVDSLQLIYSGRIMQ 54
Query: 55 DVTTLEENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQT 114
D + E + E+ F+V+M KS + PP T Q
Sbjct: 55 DDRPISEYNIMEDRFIVLMTKKS-------------------VNAVEPPKKN--TEAEQK 93
Query: 115 PAPTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEA 174
ES P + PA P P+ AP
Sbjct: 94 ------------ESQQPKSGNTEQLRPAEPPRPSVAPDE--------------------- 120
Query: 175 TVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGN 234
Q++ D+ +D V ALRA++N+PERA+EYL +GIP T VP V +
Sbjct: 121 --QRVRDLVLMGYDEPDVRAALRASFNHPERAIEYLITGIP--THVPAVNQ--------- 167
Query: 235 PPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQ 294
QTQ AA A G A L++L F +R +++
Sbjct: 168 --TQTQTNANAADANLIG-------------------ETAERLNYLATDPHFAHVRDLIR 206
Query: 295 ANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTV 354
NP++L+ +L L + +P I+ +Q +F+ ++N P MP ++
Sbjct: 207 QNPELLELVLTHLRESDPAAFEAIRNNQEEFISMLNAP---------------MPMTASL 251
Query: 355 TPEEREAIE 363
EE A+E
Sbjct: 252 NTEEEAAVE 260
>gi|401396253|ref|XP_003879788.1| hypothetical protein NCLIV_002400 [Neospora caninum Liverpool]
gi|325114195|emb|CBZ49753.1| hypothetical protein NCLIV_002400 [Neospora caninum Liverpool]
Length = 370
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 66/202 (32%), Positives = 99/202 (49%), Gaps = 25/202 (12%)
Query: 162 AASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP 221
A S L G LE T+ ++ MG + R+ +A+RAA+NNP+RAVEYL +G+P
Sbjct: 151 AESALFTGPQLEETLTHLVAMG---FPRDQAEQAMRAAFNNPDRAVEYLMNGMP------ 201
Query: 222 PVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLR 281
P A GG +G +AQ A +A+ + +G+ LR
Sbjct: 202 PEVSALFGGASG------EAQDAEGDAIADEGDADGDEGDEDDGNPLGA---------LR 246
Query: 282 NSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVL 341
+ F +R MVQANP +L +LQ +G NP L+ LI ++Q FL ++ GE
Sbjct: 247 HHPAFNQIRQMVQANPAMLPQVLQLIGNSNPQLLELITQNQDAFLEMLQSGQGTGEAGAP 306
Query: 342 GQLASAMPQAVTVTPEEREAIE 363
G A + +TP+E EA++
Sbjct: 307 GTGFGA-GGIIQMTPDEMEALQ 327
>gi|342181674|emb|CCC91154.1| putative UV excision repair RAD23 protein, partial [Trypanosoma
congolense IL3000]
Length = 280
Score = 74.7 bits (182), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 66/209 (31%), Positives = 102/209 (48%), Gaps = 26/209 (12%)
Query: 123 QSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLE-ATVQQILD 181
Q+V E AP + + APA A AP P P + + + S++ A ++ A + I
Sbjct: 18 QNVKE-APHVSEGSEAPATASAPTPGEQPSAETAAAAPRTGSSVAATQGVDPALIDSIAA 76
Query: 182 MGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQA 241
MG DR+ + ALRAAY NP+RAVE+L++GIP V R A Q P T
Sbjct: 77 MG--FEDRDQIALALRAAYMNPDRAVEFLFTGIPSH-----VQRELAESQLRAVPGNTSV 129
Query: 242 QQPA-APAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQIL 300
A P SG + LF NA L Q + +R++V++NPQ L
Sbjct: 130 SGGVDATHPQSGRGGDTESLF---------NA-------LMAVPQMEEIRSIVRSNPQAL 173
Query: 301 QPMLQELGKQNPHLMRLIQEHQTDFLRLI 329
++Q+L ++ P + +L+Q+ +F+R +
Sbjct: 174 GTVIQQLQERFPQIAQLVQQDPEEFMRFM 202
>gi|157872825|ref|XP_001684939.1| UV excision repair RAD23-like protein [Leishmania major strain
Friedlin]
gi|68128009|emb|CAJ06783.1| UV excision repair RAD23-like protein [Leishmania major strain
Friedlin]
Length = 425
Score = 74.3 bits (181), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 73/221 (33%), Positives = 104/221 (47%), Gaps = 23/221 (10%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV +KT+ G E++V+ + DVK+ +E D Y + L G VL+D L
Sbjct: 1 MKVILKTITGKQHEVDVEATSTILDVKRLLE-----DEYEPASLRLCFNGAVLEDSMMLA 55
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTST------QPTTTSQT 114
+ V +N +V+ K K+ A + P +A SSAP +ST P T+ +
Sbjct: 56 DAGVKDNDSLVLAGRKRKIPKPPAPQTAETPTTEAAPESSAPASSTPPPAMSAPALTTTS 115
Query: 115 PAPTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEA 174
PA + AP + P AA PA AP +S ++ YG A NL
Sbjct: 116 PATSAAPVDPPAPAVPTAAAAPVTSTTPAGPAVPAAPAASTTNTYG-VAPNL-------- 166
Query: 175 TVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 215
+ ++ MG DR + ALRAA+ N ERAVEYL+ GIP
Sbjct: 167 -IDEVASMGFE--DRSQIALALRAAFMNVERAVEYLFEGIP 204
>gi|212645665|ref|NP_496488.2| Protein RAD-23 [Caenorhabditis elegans]
gi|194686136|emb|CAA93780.2| Protein RAD-23 [Caenorhabditis elegans]
Length = 323
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 73/153 (47%), Gaps = 35/153 (22%)
Query: 177 QQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPP 236
+ +L + G +DRE I ALRAA+ NP+RAVE+L +G+P+ A
Sbjct: 131 ENVLAITGMGYDREQTIAALRAAFWNPDRAVEFLLNGLPDDAA----------------- 173
Query: 237 AQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQAN 296
P GP Q + N+ + G L+ L N Q +R ++Q N
Sbjct: 174 ---------DQEPDLGP--------EQNIDNVDED-GNDDLNMLANMPQLAEIRALIQQN 215
Query: 297 PQILQPMLQELGKQNPHLMRLIQEHQTDFLRLI 329
P++L +LQ+L NP L++ IQ +Q F+ L+
Sbjct: 216 PEMLAAVLQQLAAVNPRLVQTIQNNQQAFMDLL 248
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 51/89 (57%), Gaps = 2/89 (2%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+ V +TL +F +E+ + +++VK + + +G D P Q+ LI+ GK+L D +
Sbjct: 3 LSVTFRTLTQVNFNLELNEDQTIAEVKALVASEKGDDYAPELQK-LIYNGKILDDSVKVG 61
Query: 61 ENKVAENSFVVVMLTKSKVSSSG-ASTVS 88
E + FVVVML+K KV+ +STV+
Sbjct: 62 EVGFDSSKFVVVMLSKRKVTEVAPSSTVA 90
>gi|443919043|gb|ELU39338.1| UBA domain-containing protein [Rhizoctonia solani AG-1 IA]
Length = 886
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 58/178 (32%), Positives = 85/178 (47%), Gaps = 32/178 (17%)
Query: 164 SNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPV 223
S+ VAG L + ++ ++ MG ++RE ++RALRA++NNP+RAVEYL +GIPE
Sbjct: 164 SSFVAGGALNSAIENMMGMG---FEREQIMRALRASFNNPDRAVEYLLTGIPEHLLAETA 220
Query: 224 ARASAG-----------GQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSN- 271
AS G A PA A + + T G + PL+LF Q G N
Sbjct: 221 PPASGGPAATPAASNPAPAAPTTPAAAPAARSTTTSGTGGGASGPLNLFAQAAAQSGGNP 280
Query: 272 -----------------AGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNP 312
L+ L+NS FQ ++ NP +LQP++Q+L + NP
Sbjct: 281 STGAGADAGEGAGGGAGINPAALESLQNSPMFQNTLGAIRENPALLQPLIQQLAQSNP 338
>gi|46015810|pdb|1UEL|A Chain A, Solution Structure Of Ubiquitin-Like Domain Of Hhr23b
Complexed With Ubiquitin-Interacting Motif Of
Proteasome Subunit S5a
Length = 95
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/82 (45%), Positives = 57/82 (69%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V +KTL+ F+I++ PE+ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSS 82
E K+ E +FVVVM+TK K S+
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVST 82
>gi|345327424|ref|XP_003431168.1| PREDICTED: UV excision repair protein RAD23 homolog B-like
[Ornithorhynchus anatinus]
Length = 182
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/99 (38%), Positives = 61/99 (61%), Gaps = 8/99 (8%)
Query: 273 GAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP 332
G L+FLRN QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F++++NEP
Sbjct: 46 GGHPLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEP 105
Query: 333 VE--------GGEGNVLGQLASAMPQAVTVTPEEREAIE 363
V+ G + + S + VTP+E+EAIE
Sbjct: 106 VQESGGQGGGGSGSGGVAEAGSGHMNYIQVTPQEKEAIE 144
>gi|408391366|gb|EKJ70745.1| hypothetical protein FPSE_09115 [Fusarium pseudograminearum CS3096]
Length = 242
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 69/217 (31%), Positives = 98/217 (45%), Gaps = 37/217 (17%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV K LK F ++V+P + +S VK+ I +G + Q LI+ GK+LKD T+
Sbjct: 1 MKVTFKDLKQQKFTLDVEPSELISAVKEKISAEKG---WQPQLQKLIYSGKILKDDETVG 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ E FVV M+ K K PT +++ A A
Sbjct: 58 SYNIEEKGFVVCMVNKPK-----------------------------PTKPAESSAAPPA 88
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPA-PAPVSSVSDVYGQAASNLVAGSNLEATVQQI 179
P + P P A A A PA P P S +D + S L GS + +
Sbjct: 89 TPAAPPTRTPAAPAAPAQSASQQAAVPATPTPQRS-ADAGSEEPSGLAMGSQRTEAIANM 147
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE 216
MG ++R + A+RAA+NNP+RAVEYL +GIP+
Sbjct: 148 EAMG---FERSQIEAAMRAAFNNPDRAVEYLLNGIPD 181
>gi|159162808|pdb|1P1A|A Chain A, Nmr Structure Of Ubiquitin-Like Domain Of Hhr23b
Length = 85
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 37/82 (45%), Positives = 57/82 (69%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V +KTL+ F+I++ PE+ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 4 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 63
Query: 61 ENKVAENSFVVVMLTKSKVSSS 82
E K+ E +FVVVM+TK K S+
Sbjct: 64 EYKIDEKNFVVVMVTKPKAVST 85
>gi|299117286|emb|CBN75246.1| rad23b protein [Ectocarpus siliculosus]
Length = 341
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 52/139 (37%), Positives = 66/139 (47%), Gaps = 6/139 (4%)
Query: 195 ALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPN 254
ALRAA+N+ RA YL GIP+ V S G A A A A +
Sbjct: 98 ALRAAFNDVSRAASYLMEGIPDN-----VGAGSGGSDARGGGDAALAAAMMAGAEDEDGD 152
Query: 255 ANPLDLFPQGLPNMGSNAGAGT-LDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPH 313
MG AG G L+F+R QF LR +V+ NP +L +LQ L Q+P
Sbjct: 153 EGGGGAAGLAQALMGMEAGEGNPLNFMRFHPQFDELRGLVRENPAMLPQVLQGLATQSPE 212
Query: 314 LMRLIQEHQTDFLRLINEP 332
L+ I +H DFLRL+NEP
Sbjct: 213 LIERINQHPDDFLRLMNEP 231
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 52/96 (54%), Gaps = 4/96 (4%)
Query: 5 VKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKV 64
VKTLKG F I+V E +SDVK I V+G D P + Q+LI GK LKD +L V
Sbjct: 7 VKTLKGEVFRIDVAEESVMSDVKTKISEVRGHD--PGT-QVLICGGKTLKDGDSL-AGSV 62
Query: 65 AENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSS 100
A F+V+M+ + + ++A + Q T++
Sbjct: 63 AAGGFLVLMVKALAIDPANVEMLTAMGFPEDQATAA 98
>gi|355715047|gb|AES05207.1| RAD23-like protein A [Mustela putorius furo]
Length = 182
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 63/101 (62%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D + +
Sbjct: 22 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 81
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPP 103
++ E +FVVVM+TK+K S + A+P ++++S PP
Sbjct: 82 RIDEKNFVVVMVTKAKTSPGTSVPPEASPTAAPESSTSFPP 122
>gi|258644511|dbj|BAI39766.1| osRAD23-like [Oryza sativa Indica Group]
gi|258644734|dbj|BAI39979.1| osRAD23-like [Oryza sativa Indica Group]
Length = 88
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 30/45 (66%), Positives = 37/45 (82%)
Query: 182 MGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARA 226
MGGG+WDR+TV+ A RAAYNNPERA+EYLY+G+PEQ P +A
Sbjct: 1 MGGGAWDRDTVMSARRAAYNNPERAMEYLYTGVPEQAEAPAAVQA 45
>gi|389609121|dbj|BAM18172.1| UV excision repair protein rad23 [Papilio xuthus]
Length = 254
Score = 71.6 bits (174), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 39/97 (40%), Positives = 59/97 (60%), Gaps = 13/97 (13%)
Query: 277 LDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPV--- 333
L FLR+ QFQ +R ++Q NP +L +LQ++G+ NP L++ I +HQ F+R++NEPV
Sbjct: 124 LAFLRDQPQFQQMRAVIQQNPSLLNTVLQQIGQTNPALLQAISQHQQAFVRMLNEPVNPP 183
Query: 334 -------EGGEGNVLGQLASAMPQAVTVTPEEREAIE 363
+ G N + Q P V V+P++REAIE
Sbjct: 184 APGAAVEDSGAENPMPQ---PPPSVVQVSPQDREAIE 217
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/114 (38%), Positives = 61/114 (53%), Gaps = 15/114 (13%)
Query: 103 PTSTQPTTTSQTPAPTVAPPQSVPESAPPPAAP-APAPAPAPAPAPAPAPVSSVSDVYGQ 161
P+ TQ ++TS A A V +S +A P P A P PV+ VS
Sbjct: 7 PSETQASSTSTPEAGECAASTVVGDSKEKSSAEETPKPPTAAEPERTSEPVAPVS----- 61
Query: 162 AASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 215
A + E+TVQ I+DMG ++R+ V +ALRA+++N ERAVEYL +GIP
Sbjct: 62 ------AELDFESTVQSIMDMG---YNRQQVEQALRASFSNRERAVEYLITGIP 106
>gi|34015239|gb|AAQ56432.1| putative DNA repairing protein [Oryza sativa Japonica Group]
gi|35210523|dbj|BAC92639.1| unknown protein [Oryza sativa Japonica Group]
gi|35215224|dbj|BAC92575.1| unknown protein [Oryza sativa Japonica Group]
Length = 88
Score = 71.6 bits (174), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 30/45 (66%), Positives = 37/45 (82%)
Query: 182 MGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARA 226
MGGG+WDR+TV+ A RAAYNNPERA+EYLY+G+PEQ P +A
Sbjct: 1 MGGGAWDRDTVMSARRAAYNNPERAMEYLYTGVPEQAEAPAAVQA 45
>gi|341902355|gb|EGT58290.1| hypothetical protein CAEBREN_15682 [Caenorhabditis brenneri]
Length = 316
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 51/163 (31%), Positives = 79/163 (48%), Gaps = 38/163 (23%)
Query: 173 EATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAV----PPVARASA 228
E ++ I+++G DRE + LRAA + +RA YL++GIPE + V P RA
Sbjct: 107 EESIAAIMEIGA---DREQAVAVLRAARWSRDRAAGYLFNGIPEDSVVQEPAPQEPRAEE 163
Query: 229 -GGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQ 287
GG+A A+ +AQ+ LD L N Q +
Sbjct: 164 QGGEAPAVDAEAEAQEHE------------------------------DLDILANLPQLE 193
Query: 288 ALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLIN 330
+R +VQ NP+ L P+LQ++ NP L+R IQ +Q +F+ ++N
Sbjct: 194 EIRQLVQQNPENLAPILQQIAAHNPRLVRTIQNNQQEFMDMLN 236
>gi|340504527|gb|EGR30961.1| uv excision repair protein rad23, putative [Ichthyophthirius
multifiliis]
Length = 423
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 87/334 (26%), Positives = 127/334 (38%), Gaps = 91/334 (27%)
Query: 1 MKVFVKTLKGT-HFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKD-VTT 58
MK+ +KTLKG FEI + E +S +K I +G + L+H+GK L D
Sbjct: 1 MKLTIKTLKGNDFFEINFQNETTISQIKDTICQKKGEQCKENIK--LVHKGKQLNDDQKN 58
Query: 59 LEENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPT 118
+E + EN F+++M+ T Q Q PA
Sbjct: 59 CQELGIKENDFLIMMVF----------------------------TKKQGQIPKQQPAEI 90
Query: 119 VAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQ 178
Q+ PP A P P +S Q+ N S E V+
Sbjct: 91 QNEQQT---QINPPVQSDSAQNHLQKP---PCQISQ-----QQSTEN----SEFEQKVKD 135
Query: 179 ILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQ 238
I MG +++ +I+AL+AA+NN ERA+EYL +G Q P
Sbjct: 136 IEAMG---FEKSKIIQALQAAFNNQERAIEYLLNG-----------NIPILQQQQQQPNL 181
Query: 239 TQAQQPAAPAPTSGPNA---NPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQA 295
+QP P A NP QFQ + +++
Sbjct: 182 QNQEQPLDPVNLEELQALAQNP---------------------------QFQQIVQVIRQ 214
Query: 296 NPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLI 329
NPQ++ P+LQEL + NP L +L+Q + FL I
Sbjct: 215 NPQLILPILQELSQTNPQLAQLLQSNPQAFLSYI 248
>gi|363751284|ref|XP_003645859.1| hypothetical protein Ecym_3572 [Eremothecium cymbalariae
DBVPG#7215]
gi|356889493|gb|AET39042.1| Hypothetical protein Ecym_3572 [Eremothecium cymbalariae
DBVPG#7215]
Length = 443
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 93/365 (25%), Positives = 152/365 (41%), Gaps = 48/365 (13%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+ + K K +++ P +++ K+ + + D SQ +I GKVL+D TL+
Sbjct: 3 ITINFKDFKKEKLPLQLSPTATIAEAKQLLAKEKQCD---ESQLKMIFSGKVLQDGHTLD 59
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
K+ + V+ M++K K + S + + + + T +A P ++S T
Sbjct: 60 ACKLKDGDQVIFMISKKKTGTL-MSPAATTTSTETKVTEAAAPGIRAVESSSDKAKKTAG 118
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P+ +A +A A A A P S+ D V GS T+++I+
Sbjct: 119 APEGTAMAATTSSAVAAVDAGAAQPTNTTGSDSNPPD------HGFVTGSQRNETIERIM 172
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
+MG ++R V ALRAA+NNP+RAVEYL GIPE P S G A
Sbjct: 173 EMG---YERSQVESALRAAFNNPDRAVEYLLMGIPEHLQAAPQPAGS-----GVVAASQS 224
Query: 241 AQQPAAPAPT---------------SGPNANPLDLFPQ-GLPNMGSNAGA------GTLD 278
+A APT G +A+ +LF Q G AG GTL
Sbjct: 225 MDTSSAIAPTVESATAGVTTATTHTGGASAHEDNLFAQAAAAESGDTAGVTEASATGTLS 284
Query: 279 FLRN--------SQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLIN 330
+ + LR ++ +P+ L P+L+ L + P + I + F+ ++
Sbjct: 285 HGSSPLQTIGLTFEDLMQLRGVINGDPEALPPLLESLSDRYPEVREQIMGNPEMFISMLL 344
Query: 331 EPVEG 335
+ V G
Sbjct: 345 QAVGG 349
>gi|367027912|ref|XP_003663240.1| hypothetical protein MYCTH_80581 [Myceliophthora thermophila ATCC
42464]
gi|347010509|gb|AEO57995.1| hypothetical protein MYCTH_80581 [Myceliophthora thermophila ATCC
42464]
Length = 377
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 71/211 (33%), Positives = 106/211 (50%), Gaps = 39/211 (18%)
Query: 173 EATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQA 232
E + I +M ++R + A+RAA+ NP+RAVEYL +GIPE Q+
Sbjct: 144 EQRAEAIANMEAMGFERSQIDAAMRAAFFNPDRAVEYLLNGIPEHLQ-----------QS 192
Query: 233 GNPPAQTQAQQPAAPAPTSGP-NANPLDLFPQGLPNMGSNAGA----------------G 275
+ P Q A+ A N N DL Q G+ +G+ G
Sbjct: 193 ASAPRQAAQTAAASSAGADDDSNVNLFDLAAQAGRGSGARSGSGADVGTGAAAAAGQDLG 252
Query: 276 TLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEG 335
L++LR + QFQ LR +VQ PQ+L+P+LQ+LG NP L +LI ++ FL L++E G
Sbjct: 253 NLEWLRANAQFQQLRQVVQQQPQMLEPILQQLGASNPQLAQLIAQNPDQFLSLLSES--G 310
Query: 336 GEGNVLGQLASAMP---QAVTVTPEEREAIE 363
G+ + + +P ++VT EER+AIE
Sbjct: 311 GDDD------APLPPGAHQISVTEEERDAIE 335
>gi|238567698|ref|XP_002386292.1| hypothetical protein MPER_15516 [Moniliophthora perniciosa FA553]
gi|215437819|gb|EEB87222.1| hypothetical protein MPER_15516 [Moniliophthora perniciosa FA553]
Length = 161
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 61/196 (31%), Positives = 94/196 (47%), Gaps = 37/196 (18%)
Query: 15 IEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVML 74
++ +P D V +K IE G +P + Q +I+ GK+L D T+E + E F+V+M+
Sbjct: 1 VDAEPSDTVGAIKSKIEAAHG---HPVASQKVIYSGKILADDKTIESCGIKEKDFLVLMV 57
Query: 75 TKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQSVPESAPPPAA 134
+K P T TTS TPAP +
Sbjct: 58 SK--------------------------PKPTPAATTSSTPAPATPVAAPPTSESSSTTT 91
Query: 135 PAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIR 194
AP PA AP + PA + D S+ ++GS L+ T+ +++MG + ++ V+R
Sbjct: 92 TAPPPAAAPVSSTEPAQQRAFGDT-----SSFLSGSALQDTINNMVEMG---FPKDQVLR 143
Query: 195 ALRAAYNNPERAVEYL 210
ALRA++NNP+RAVEYL
Sbjct: 144 ALRASFNNPDRAVEYL 159
>gi|367011717|ref|XP_003680359.1| hypothetical protein TDEL_0C02590 [Torulaspora delbrueckii]
gi|359748018|emb|CCE91148.1| hypothetical protein TDEL_0C02590 [Torulaspora delbrueckii]
Length = 368
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 84/304 (27%), Positives = 122/304 (40%), Gaps = 73/304 (24%)
Query: 46 LIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTS 105
LI+ GKVL+D +L+E+ + + V+ M++
Sbjct: 44 LIYSGKVLQDSKSLQESGLKDGDQVIFMIS------------------------------ 73
Query: 106 TQPTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASN 165
++ TV PQS SAP +PAP + PA A SS +D
Sbjct: 74 -----KKKSTTTTVTEPQSKETSAPVSQSPAP-QSETPA-AETQQEASSTTD------PG 120
Query: 166 LVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVAR 225
V G+ V++I++MG ++RE V RALRAA+NNP+RAVEYL GIPE +
Sbjct: 121 FVVGAQRNEAVERIMEMG---YEREQVDRALRAAFNNPDRAVEYLLMGIPENLQQQQQPQ 177
Query: 226 ASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQG----------------LPNMG 269
A Q + + P +G A DLF Q
Sbjct: 178 QQAEQPQEQEEEQQETESNTEP---TGEAAGE-DLFAQAAQRGGAPGGETGGEGTTGGPP 233
Query: 270 SNAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLI 329
+ G D L ALR +V NP+ L P+L+ L + P L I + F+ ++
Sbjct: 234 GSIGLTMEDLL-------ALRQVVSGNPEALAPLLESLSNRFPQLREQIVANPEVFVSML 286
Query: 330 NEPV 333
E V
Sbjct: 287 LEAV 290
>gi|357501513|ref|XP_003621045.1| RAD23-like protein [Medicago truncatula]
gi|355496060|gb|AES77263.1| RAD23-like protein [Medicago truncatula]
Length = 142
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/79 (51%), Positives = 49/79 (62%), Gaps = 2/79 (2%)
Query: 133 AAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETV 192
+AP+ A P A + YG+A SNL+AGS LE T+QQI D+G R+ V
Sbjct: 36 SAPSKKAIRPKARHPQGAASRMLLGTYGKAESNLIAGSTLEPTIQQI-DIGR-KLVRDIV 93
Query: 193 IRALRAAYNNPERAVEYLY 211
IRAL AAYNNPER VEYLY
Sbjct: 94 IRALSAAYNNPERTVEYLY 112
>gi|154342013|ref|XP_001566958.1| UV excision repair RAD23-like protein [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134064283|emb|CAM40483.1| UV excision repair RAD23-like protein [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 433
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 103/395 (26%), Positives = 158/395 (40%), Gaps = 84/395 (21%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV +KT+ G E++V+ + DVKK + D Y + L G VL+D L
Sbjct: 1 MKVILKTITGKQHEVDVEATSTILDVKKLL-----VDEYEPASLRLCFNGAVLEDSKILA 55
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ V +N F+V+ K K+ ++ P+ + Q T +AP S AP A
Sbjct: 56 DAGVKDNDFLVLAGRKRKIPKP-----ASMPSAEPQKTEAAPEFS----------APLSA 100
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAP--------------------------------- 147
+APPPA P A
Sbjct: 101 -------TAPPPAMPTSASTTTSTADSAAPAVPAATTAPATAPAPAPAPAPAPAPVAPTP 153
Query: 148 ---APAPVSSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPE 204
+ PV+S + +YG A NL + ++ M G DR + ALRAA+ N +
Sbjct: 154 PAGSAIPVASAASIYG-VAPNL---------IDEVAAM--GFEDRNQIALALRAAFMNVD 201
Query: 205 RAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQG 264
RAVEYL+ GIP V ++ G P +A P+A + T+ A P+
Sbjct: 202 RAVEYLFDGIPPHL----VEELTSHGLPAAPAEAPRASNPSASSATA---AVPVST-SLA 253
Query: 265 LPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTD 324
S A + D L QF +RT+ N L ++Q++ ++P + I+ +
Sbjct: 254 SAATLSTAASEMRDALSRIPQFDEIRTLYNQNTDTLPVVMQQIALRHPAVYEQIERNPEV 313
Query: 325 FLRLINEPVEGGEGNV-LGQLASAMPQAVTVTPEE 358
FL ++ E + G N G +AS +AV EE
Sbjct: 314 FLSIMGEAGQPGTSNAPPGSVASPTAEAVVGDTEE 348
>gi|259155371|ref|NP_001158747.1| UV excision repair protein RAD23 homolog B [Salmo salar]
gi|223646842|gb|ACN10179.1| UV excision repair protein RAD23 homolog B [Salmo salar]
gi|223672703|gb|ACN12533.1| UV excision repair protein RAD23 homolog B [Salmo salar]
Length = 131
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 39/98 (39%), Positives = 65/98 (66%), Gaps = 1/98 (1%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++ +KTL+ +I++ P+ V +K+ IE +G D +P S Q LI+ GK+L+D T ++
Sbjct: 1 MQITLKTLQQQTIQIDIDPDQTVKALKEKIEAERGKDNFPVSGQKLIYAGKILQDDTPIK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTT 98
+ K+ E +FVVVM++K+K S++ AST S+ NQ T
Sbjct: 61 DYKIDEKNFVVVMVSKAK-STTAASTPSSEAPNQLFCT 97
>gi|169597111|ref|XP_001791979.1| hypothetical protein SNOG_01337 [Phaeosphaeria nodorum SN15]
gi|160707447|gb|EAT90986.2| hypothetical protein SNOG_01337 [Phaeosphaeria nodorum SN15]
Length = 386
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 77/230 (33%), Positives = 110/230 (47%), Gaps = 55/230 (23%)
Query: 164 SNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAV--- 220
S L G+ EA V + MG + R + A+RAA+ NP+RAVEYL +GIP+
Sbjct: 112 SALTMGNEREAAVANMESMG---FARADIDAAMRAAFFNPDRAVEYLLTGIPDSARQEQA 168
Query: 221 -------PPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNA- 272
P +AGG G A AP+ G P++LF G A
Sbjct: 169 QAAQANAPSSPTPAAGGNTG-----------ATAAPSGGDE--PINLFEAARGGSGGAAR 215
Query: 273 ----------------GAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMR 316
A +L+FLRN+ QFQ LR +VQ PQ+L+P+LQ++G NP L +
Sbjct: 216 SGATGAAAGAGGATALNANSLEFLRNNPQFQQLRQVVQQQPQMLEPILQQVGAGNPQLAQ 275
Query: 317 LIQEHQTDFLRLINEPVEGGEGNVLGQLASAMP---QAVTVTPEEREAIE 363
+I + FL+L+ E + + +P QA++VT +EREAIE
Sbjct: 276 MIAANPEQFLQLLAEDADDD---------APLPPGTQAISVTEDEREAIE 316
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 53/93 (56%), Gaps = 3/93 (3%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ K LK F IE +P + + ++K I+ +G +V QQ LI+ GK+L+D T+E
Sbjct: 1 MKITFKDLKQNKFVIEAEPSETIGELKAKIQADKGWEV---PQQKLIYSGKILQDANTVE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPAN 93
+ E F+V M++K+ + + + +SA N
Sbjct: 58 SYSIEEKGFIVCMVSKTPAAPAAPAPLSAVSQN 90
>gi|312382824|gb|EFR28136.1| hypothetical protein AND_04281 [Anopheles darlingi]
Length = 273
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 59/183 (32%), Positives = 87/183 (47%), Gaps = 35/183 (19%)
Query: 191 TVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPT 250
+VI AL NN E AVEYL +A A + Q A+ PAA P
Sbjct: 77 SVIVALEICSNNREAAVEYLMD--------------NAADMAVDLLEQQSAETPAASVPG 122
Query: 251 SGPNANPLDLFPQGL--PNMGSNAGAGT----LDFLRNSQQFQALRTMVQANPQILQPML 304
G + GL P+M AG L FLR + F ++ ++Q +P +L ++
Sbjct: 123 IGVS---------GLQAPDMAVAAGGARNERPLAFLRGNPVFFEMKRLLQEDPSLLPYLM 173
Query: 305 QELGKQNPHLMRLIQEHQTDFLRLINEPVE----GGEGNVLGQLASAMPQAVTVTPEERE 360
Q + NP+LMR+I E+Q +FL +INE E E L +A+AM ++TP + +
Sbjct: 174 QRIQYSNPNLMRIISENQEEFLAMINENSELAPDNREAQELESIAAAMVN--SLTPSDMD 231
Query: 361 AIE 363
AI+
Sbjct: 232 AID 234
Score = 45.4 bits (106), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 41/72 (56%), Gaps = 2/72 (2%)
Query: 1 MKVFVKTLKGTHFEIEVKPE-DKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTL 59
MK+ +KTLK F +EV E D V +K+ I + G YP +Q LI+ GKV++D L
Sbjct: 1 MKITLKTLKQQTFHVEVDVEKDTVRMLKEKIFSESGQ-AYPVERQWLIYLGKVMEDSHPL 59
Query: 60 EENKVAENSFVV 71
+ + + FV+
Sbjct: 60 SQYNLDDKKFVM 71
>gi|409080544|gb|EKM80904.1| hypothetical protein AGABI1DRAFT_112618 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 409
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 29/52 (55%), Positives = 41/52 (78%), Gaps = 3/52 (5%)
Query: 164 SNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 215
S + G+ L+ T+Q +++MG +DRE V+RALRA+YNNP+RAVEYL +GIP
Sbjct: 147 SGFLTGAALQTTIQNMMEMG---FDREQVLRALRASYNNPDRAVEYLMTGIP 195
>gi|167522036|ref|XP_001745356.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163776314|gb|EDQ89934.1| predicted protein [Monosiga brevicollis MX1]
Length = 320
Score = 68.2 bits (165), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 53/158 (33%), Positives = 75/158 (47%), Gaps = 32/158 (20%)
Query: 173 EATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQA 232
E V ++++MG +DR V ALR A+ NP+RA EYL +G+P + A P A+
Sbjct: 119 EDDVNRLMNMG---FDRPQVEAALRRAFGNPDRAAEYLTTGMPAEEA--PSMDAT----- 168
Query: 233 GNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTM 292
P PA G P +L + L FL ++ F LR +
Sbjct: 169 -----------PDEPAGGEGEAVVPQEL-----------SEDSPLYFLASNPSFLQLRQL 206
Query: 293 VQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLIN 330
VQ P +L MLQ++ NP L+ LI E+Q DF L+N
Sbjct: 207 VQEQPHLLPSMLQQIAASNPDLVSLINENQEDFYILLN 244
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV +KT+K F++++ + + +VK IE +G D YP +I+QGKVL D TL
Sbjct: 1 MKVTIKTIKDGTFDLQMGDDATIGEVKAAIEQSKG-DKYPKDGLKVIYQGKVLGDSDTLA 59
Query: 61 ENKVAENSFVVVM 73
E F+VVM
Sbjct: 60 SANFQEKDFLVVM 72
>gi|392593502|gb|EIW82827.1| UV excision repair protein Rad23 [Coniophora puteana RWD-64-598
SS2]
Length = 424
Score = 67.8 bits (164), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 31/50 (62%), Positives = 40/50 (80%), Gaps = 3/50 (6%)
Query: 166 LVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 215
+ G+ L ATVQ I++MG ++RE V RALRA+YNNPERAVEYL++GIP
Sbjct: 144 FLTGAALNATVQNIMEMG---FEREQVQRALRASYNNPERAVEYLFNGIP 190
>gi|328865495|gb|EGG13881.1| repC-binding protein A [Dictyostelium fasciculatum]
Length = 204
Score = 67.8 bits (164), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 62/213 (29%), Positives = 98/213 (46%), Gaps = 36/213 (16%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ +K + + +V ++ V+++K + +Q + AS Q LI+ GKVL++ L
Sbjct: 1 MKITIKNINKEVYTFDVTGDESVTELK---QLIQNKHSHQASWQTLIYGGKVLENDNKLS 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ EN F+V M+ K K +T ++ P + QP TT
Sbjct: 58 TYNITENGFLVCMVKKPK----------------EETVATTAP-AVQPATT--------- 91
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P + + PA P PAP P + S S+ + G EA + ++
Sbjct: 92 -----PVAPTSAPSTTPASTSTPTNTPAPTPSPASSTSPSGGNSSFIVGPEYEAAITNLM 146
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 213
+M G +RE VIRALRA++NN ERA + L SG
Sbjct: 147 EMSGA--NREMVIRALRASFNNAERAADILLSG 177
>gi|401425983|ref|XP_003877476.1| UV excision repair RAD23-like protein [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322493721|emb|CBZ29011.1| UV excision repair RAD23-like protein [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 429
Score = 67.4 bits (163), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 78/231 (33%), Positives = 106/231 (45%), Gaps = 39/231 (16%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV +KT+ G E++V+ + DVKK +E D Y + L G VL+D L
Sbjct: 1 MKVILKTITGKQHEVDVEATSTILDVKKLLE-----DEYEPASLRLCFNGAVLEDSKMLA 55
Query: 61 ENKVAENSFVVVMLTKSKV------SSSGASTVSAAPANQAQTTSSAPPTSTQP------ 108
+ + +N +V+ K K+ S+ S AAP SSAP +S P
Sbjct: 56 DAGIKDNDSLVLAGRKRKIPKPPAPQSAEPSKTEAAPE------SSAPASSATPPPAMST 109
Query: 109 ----TTTSQTPAPTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAAS 164
TT+ T A V PP +A A A APA AP +SV++ YG A
Sbjct: 110 PVLATTSPATSATPVDPPAPAVPTAATAPAAPVASTTPAAPAVPAAPAASVTNTYG-VAP 168
Query: 165 NLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 215
NL + ++ M G DR + ALRAA+ N ERAVEYL+ GIP
Sbjct: 169 NL---------IDEVASM--GFEDRNQIALALRAAFMNVERAVEYLFEGIP 208
Score = 42.4 bits (98), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 42/91 (46%), Gaps = 2/91 (2%)
Query: 127 ESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILDMGGGS 186
ES P A AP+ + AP+ A + S Q S L + VQQ++++GGG
Sbjct: 316 ESGQPGTASAPSGSAAPSTGQAVVGDAEGSSFMNQLQSGLELTAEDRTAVQQLVELGGGM 375
Query: 187 WDRETVIRALRAAYNNPERAVEYLYS--GIP 215
WD ++ + A N E A L+ G+P
Sbjct: 376 WDEQSAVLVYLATQRNQEVAASVLFEHGGVP 406
>gi|326480573|gb|EGE04583.1| nucleotide excision repair protein RAD23 [Trichophyton equinum
CBS 127.97]
Length = 255
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ + LK F I+ +P DK+ DVK+ I T +G +PASQQ LI+ GK+L+D T+E
Sbjct: 1 MKLTFRDLKQQKFVIDAEPSDKILDVKEKIATEKG---WPASQQKLIYSGKILQDDNTVE 57
Query: 61 ENKVAENSFVVVML 74
+ E F+V M+
Sbjct: 58 SYNIEEKGFIVCMV 71
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/127 (37%), Positives = 74/127 (58%), Gaps = 28/127 (22%)
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGA-GTLDFLRNSQQFQALRTMVQANPQI 299
++ PA P+P G G AG+ G+L+FLRN+ FQ LR +VQ PQ+
Sbjct: 112 SETPATPSPAGGA---------------GETAGSLGSLEFLRNNPHFQQLRQLVQQQPQM 156
Query: 300 LQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMP---QAVTVTP 356
L+P+LQ++G NP L +LI ++Q FL+L++E V+ + +P Q+++VT
Sbjct: 157 LEPILQQVGAGNPQLAQLIGQNQEQFLQLLSEDVDD---------ETQLPPGTQSISVTE 207
Query: 357 EEREAIE 363
EER+AIE
Sbjct: 208 EERDAIE 214
>gi|343428884|emb|CBQ72429.1| related to RAD23-nucleotide excision repair protein (ubiquitin-like
protein) [Sporisorium reilianum SRZ2]
Length = 434
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 48/73 (65%), Gaps = 10/73 (13%)
Query: 166 LVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVA- 224
+ G LE+ +Q +++MG ++R+ V RA+RAA+NNP+RAVEYL +GIPE A PP A
Sbjct: 158 FLTGGALESAMQSMMEMG---FERDQVQRAMRAAFNNPDRAVEYLMTGIPEHLANPPAAP 214
Query: 225 ------RASAGGQ 231
ASAG Q
Sbjct: 215 QPSSTGAASAGEQ 227
>gi|145503696|ref|XP_001437822.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124404979|emb|CAK70425.1| unnamed protein product [Paramecium tetraurelia]
Length = 324
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 57/215 (26%), Positives = 88/215 (40%), Gaps = 52/215 (24%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ +KTL G FE+EV+P D V ++K+ IE V+ + +QQ L+ +G +L D T+
Sbjct: 1 MKIIIKTLSGQTFELEVQPTDSVLNIKEKIEKVKQ---FEIAQQKLLRKGTLLVDDQTVG 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ + E F+VVM+ K A Q P +
Sbjct: 58 DLGIQEKDFLVVMVNVKKGPPQQQPVQQQAQQPPQQPQPVQPQQPIE------------- 104
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P P P + + + S+ Y QA NL+
Sbjct: 105 -------------------VPKPLNNPTTSNMVTGSE-YDQAIQNLIQ------------ 132
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 215
MG + E A++AA+NN RA+EYL +G+P
Sbjct: 133 -MGFAKSECEA---AMKAAFNNQNRAIEYLLNGLP 163
>gi|71033501|ref|XP_766392.1| DNA repair protein Rad23 [Theileria parva strain Muguga]
gi|68353349|gb|EAN34109.1| DNA repair protein rad23, putative [Theileria parva]
Length = 326
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 96/376 (25%), Positives = 159/376 (42%), Gaps = 102/376 (27%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYP---ASQQMLIHQGKVLKDVT 57
M + VKTLK +++V V D+ + ++ +P A LIH GK+LK
Sbjct: 1 MNLKVKTLKNVQVDVDVPDTASVEDLMNKV-----AESFPNMQAESLKLIHAGKILKKEL 55
Query: 58 TLEE-NKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPA 116
L++ + + + V+V+ +S+TP
Sbjct: 56 LLKDYSDIKDGDKVIVI-------------------------------------SSKTPD 78
Query: 117 PTVA-PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVS-DVYGQAASNLVAGSNLEA 174
P+ P S P S P + AP P+P P+ +VS Y +S LV GS LE
Sbjct: 79 PSKHQDPNSQPSSTTTPTSKAPQPSPLDNSPHQPSSGHNVSQQTYETVSSKLVMGSELEQ 138
Query: 175 TVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGN 234
++ +I +MG ++R V RA+ AA+NNP+RAVE+L +G + +P + +
Sbjct: 139 SINRICEMG---FERPLVERAMAAAFNNPDRAVEFLSTGNIPVSNMPNIDHQNVTA---- 191
Query: 235 PPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQ 294
P G + G L +++ F+ L VQ
Sbjct: 192 -------------------------------PEHGHSGGEDVLQMIQSHPMFEQLSQAVQ 220
Query: 295 ANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLIN-------EPVEGGEGNVLGQLASA 347
++PQ+LQ +L+ LG+ +P L++ I + Q +F+ L+N +P E N
Sbjct: 221 SDPQLLQQLLESLGQTHPELLQTIIQRQDEFMELLNSGAGAEADPYSNTEHN-------- 272
Query: 348 MPQAVTVTPEEREAIE 363
P +++TP E E+IE
Sbjct: 273 -PNIISLTPVEMESIE 287
>gi|326427437|gb|EGD73007.1| hypothetical protein PTSG_04716 [Salpingoeca sp. ATCC 50818]
Length = 214
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 64/215 (29%), Positives = 92/215 (42%), Gaps = 46/215 (21%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV VK++K FE+E V +K+ I + SD Q LI G++LKD LE
Sbjct: 1 MKVTVKSMKAGTFEVEADISKPVRLIKEAIYAEKKSDDLHPDAQRLIFSGRLLKDDDVLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
EN F+VVM G ++ PA + T+S + + +TPA +
Sbjct: 61 SLNFKENDFLVVM--------GGKRPAASKPAADKKDTAS--------SKSEETPASS-- 102
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
S P + + + AP+ P +S E ++ +
Sbjct: 103 -------STTEPKPASTTTSSSTPAAPSSGPAAS------------------EESLNTLT 137
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 215
MG +DR RAL AA+ N ERAVEYL +GIP
Sbjct: 138 AMG---FDRAQAERALSAAFGNIERAVEYLQNGIP 169
>gi|336268454|ref|XP_003348992.1| RAD23 protein [Sordaria macrospora k-hell]
Length = 249
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 53/89 (59%), Gaps = 12/89 (13%)
Query: 275 GTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVE 334
G LDFLRN+ QFQ +R +VQ PQ+L+P+LQ+LG NP L ++I ++ FL
Sbjct: 129 GNLDFLRNNAQFQQMRQLVQEQPQMLEPILQQLGAGNPQLAQMIAQNSDQFL-------- 180
Query: 335 GGEGNVLGQLASAMPQAVTVTPEEREAIE 363
N+LG+ + VT EER+AIE
Sbjct: 181 ----NLLGEGGEGGSVGIAVTEEERDAIE 205
>gi|393245007|gb|EJD52518.1| UV excision repair protein Rad23 [Auricularia delicata TFB-10046
SS5]
Length = 375
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/51 (52%), Positives = 43/51 (84%), Gaps = 3/51 (5%)
Query: 165 NLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 215
+LV G+ L+ +VQ +++MG ++RE V+RAL+A++NNP+RAVEYL++GIP
Sbjct: 128 DLVTGAALQTSVQNMIEMG---FEREQVLRALKASFNNPDRAVEYLFNGIP 175
>gi|425766442|gb|EKV05052.1| UV excision repair protein (RadW), putative [Penicillium digitatum
PHI26]
gi|425781661|gb|EKV19612.1| UV excision repair protein (RadW), putative [Penicillium digitatum
Pd1]
Length = 377
Score = 64.7 bits (156), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 70/220 (31%), Positives = 102/220 (46%), Gaps = 40/220 (18%)
Query: 164 SNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPV 223
S L GS E Q+ MG + R + RA+RAA+ NP+RA+EYL +GIP+ +
Sbjct: 139 SALTMGSAAEGAAAQMEAMG---FARTDIDRAMRAAFYNPDRAIEYLLTGIPDN-----I 190
Query: 224 ARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAG-------- 275
+ + PA T A APA SG + +LF G G
Sbjct: 191 QEQQQQQRQASEPASTGA----APAAPSGGDEPHFNLFEAAAQAGGEGGGRSRGVAGAGA 246
Query: 276 ---------TLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFL 326
+L+FLR++ FQ LR +VQ P +L+P+LQ++ NP + +I ++ F
Sbjct: 247 GTAGGEALGSLEFLRSNPHFQQLRQLVQQQPHMLEPILQQVAAGNPQIASIIGQNSDQF- 305
Query: 327 RLINEPVEGGEGNVLGQLASAMP---QAVTVTPEEREAIE 363
G L A+P QA++VT EER+AIE
Sbjct: 306 -------LQLLGEELEDEEGALPPGAQAISVTEEERDAIE 338
>gi|449300177|gb|EMC96189.1| hypothetical protein BAUCODRAFT_33528 [Baudoinia compniacensis UAMH
10762]
Length = 392
Score = 64.3 bits (155), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 79/230 (34%), Positives = 110/230 (47%), Gaps = 42/230 (18%)
Query: 164 SNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPV 223
S L G +A V + MG + R+ + RA+RAA+ NP+RAVEYL +GIP
Sbjct: 133 SALAMGEQRQAAVANMEAMG---FPRDQIDRAMRAAFFNPDRAVEYLLNGIPASAEQEQR 189
Query: 224 ARASAGGQAGNPPAQTQAQQPAAPAPTSGPNA--NPLDLFPQG----------------- 264
A A+ A N PA Q QP A +G P++LF
Sbjct: 190 AAATPQRPASNQPAPQQQAQPPAQTGNTGATGGDEPVNLFEAAAQAGQRGGVGGNRGTGD 249
Query: 265 --------LPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMR 316
G A A LDFLRN+ QFQ LR +VQ P +L+P+LQ++ NP L +
Sbjct: 250 LAAALGGGQGGQGGQATANELDFLRNNPQFQQLRQLVQQQPAMLEPILQQVAAGNPQLAQ 309
Query: 317 LIQEHQTDFLRLINEPVEGGEGNVLGQLASAMP---QAVTVTPEEREAIE 363
+I ++ F++L+ E + +V A+P Q + VT EEREAIE
Sbjct: 310 MITQNPEQFMQLL---AEDADDDV------ALPPGAQQIAVTEEEREAIE 350
>gi|351700121|gb|EHB03040.1| UV excision repair protein RAD23-like protein B [Heterocephalus
glaber]
Length = 140
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 51/76 (67%), Gaps = 1/76 (1%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
V +KTL+ F+I++ PE+ V + + IE+ +G D +P + Q LI+ GK+L D T++E
Sbjct: 55 VTLKTLQQQTFKIDIDPEETVKALNEKIESEKGKDAFPVAGQKLIYAGKILND-DTVKEY 113
Query: 63 KVAENSFVVVMLTKSK 78
K+ E +FVV M+TK K
Sbjct: 114 KIDEKNFVVFMVTKPK 129
>gi|159162855|pdb|1PVE|A Chain A, Solution Structure Of Xpc Binding Domain Of Hhr23b
Length = 72
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 45/58 (77%)
Query: 277 LDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVE 334
L+FLRN QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F++++NEPV+
Sbjct: 6 LEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQ 63
>gi|390602258|gb|EIN11651.1| UV excision repair protein Rad23 [Punctularia strigosozonata
HHB-11173 SS5]
Length = 399
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 41/52 (78%), Gaps = 3/52 (5%)
Query: 164 SNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 215
S+ V G L+ ++ +++MG ++RE V+RALRA++NNP+RAVEYL++GIP
Sbjct: 145 SSFVTGDALQQSINGMIEMG---FEREQVMRALRASFNNPDRAVEYLFNGIP 193
>gi|323451497|gb|EGB07374.1| hypothetical protein AURANDRAFT_53989 [Aureococcus
anophagefferens]
Length = 371
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/78 (47%), Positives = 45/78 (57%), Gaps = 2/78 (2%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M V VKTL+G F++E PE + VK IE Q A+ LIH GKVLKD TL
Sbjct: 1 MLVAVKTLEGRLFKVEAAPESTIGAVKGLIEASQPE--LKAAAMKLIHSGKVLKDEDTLA 58
Query: 61 ENKVAENSFVVVMLTKSK 78
+ V E SF+V M+TK K
Sbjct: 59 DKGVTEQSFLVCMVTKPK 76
>gi|406866963|gb|EKD20002.1| nucleotide excision repair protein RAD23 [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 435
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/90 (43%), Positives = 57/90 (63%), Gaps = 12/90 (13%)
Query: 277 LDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG 336
LDFLRN+ QFQ LR +VQ P +L+P+L +G NP L +LI ++ FL+L++E + G
Sbjct: 314 LDFLRNNPQFQHLRQVVQQQPGMLEPILASVGAGNPQLAQLIGQNPDQFLQLLSE--DAG 371
Query: 337 EGNVLGQLASAMP---QAVTVTPEEREAIE 363
+ + +P QA++VT EER AIE
Sbjct: 372 DD-------APLPPGAQAISVTEEERAAIE 394
>gi|93279429|pdb|2F4M|B Chain B, The Mouse Pngase-Hr23 Complex Reveals A Complete
Remodulation Of The Protein-Protein Interface Compared
To Its Yeast Orthologs
gi|93279431|pdb|2F4O|B Chain B, The Mouse Pngase-Hr23 Complex Reveals A Complete
Remodulation Of The Protein-Protein Interface Compared
To Its Yeast Orthologs
Length = 61
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 44/57 (77%)
Query: 277 LDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPV 333
L+FLRN QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F++++NEPV
Sbjct: 4 LEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPV 60
>gi|167541066|gb|ABZ82043.1| DNA repair protein, partial [Clonorchis sinensis]
Length = 156
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 52/91 (57%), Gaps = 12/91 (13%)
Query: 285 QFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP----------VE 334
QFQ +R +VQANP++L ++Q++G N L+RLIQE++ FL +N P +E
Sbjct: 26 QFQQMRALVQANPELLPQLIQQIGADNSELLRLIQENEQGFLEFLNAPISQDAGEPEGIE 85
Query: 335 GGEGNVLGQLASAMPQAV--TVTPEEREAIE 363
E G + P+ + T+T EER AIE
Sbjct: 86 SSETTTPGNVRQGEPRQIILTMTQEERAAIE 116
>gi|348690401|gb|EGZ30215.1| hypothetical protein PHYSODRAFT_553293 [Phytophthora sojae]
Length = 450
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 44/58 (75%)
Query: 276 TLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPV 333
+L+ LRN QF ALR +VQ+NP L +LQ++G Q+P L+RLI ++Q F++++NEP+
Sbjct: 227 SLEALRNHPQFDALRQLVQSNPAALPAVLQQIGAQSPELLRLIHQNQDRFVQMLNEPI 284
>gi|389741638|gb|EIM82826.1| UV excision repair protein Rad23 [Stereum hirsutum FP-91666 SS1]
Length = 395
Score = 61.6 bits (148), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 43/54 (79%), Gaps = 3/54 (5%)
Query: 164 SNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQ 217
S+ + G+ L++++Q +++MG + R+ V+RA+RA+YNNP+RAVEYL +GIPE
Sbjct: 136 SSFLTGNALQSSIQNMVEMG---FPRDQVLRAMRASYNNPDRAVEYLMTGIPEH 186
>gi|282601359|ref|ZP_05981478.2| ubiquitin family protein [Subdoligranulum variabile DSM 15176]
gi|282569316|gb|EFB74851.1| ubiquitin family [Subdoligranulum variabile DSM 15176]
Length = 721
Score = 61.6 bits (148), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 47/73 (64%), Gaps = 3/73 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+VFVK L G H +EV+P D++ DVK+ I+ +G P +Q LI GK+L+D TL+
Sbjct: 76 MQVFVKRLAGKHITLEVEPTDRIEDVKQKIQDKEG---IPPERQRLIFAGKILEDGNTLQ 132
Query: 61 ENKVAENSFVVVM 73
+ + ++S + ++
Sbjct: 133 DYSIRKDSTIYLV 145
>gi|311771876|pdb|2WYQ|A Chain A, The Crystal Structure Of The Ubiquitin-Like (Ubl) Domain
Of Hhr23a (Human Homologue A Of Rad23)
Length = 85
Score = 60.8 bits (146), Expect = 1e-06, Method: Composition-based stats.
Identities = 29/76 (38%), Positives = 51/76 (67%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D + +
Sbjct: 8 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 67
Query: 63 KVAENSFVVVMLTKSK 78
++ E +FVVVM+TK+K
Sbjct: 68 RIDEKNFVVVMVTKTK 83
>gi|58259375|ref|XP_567100.1| uv excision repair protein rhp23 [Cryptococcus neoformans var.
neoformans JEC21]
gi|57223237|gb|AAW41281.1| uv excision repair protein rhp23, putative [Cryptococcus
neoformans var. neoformans JEC21]
Length = 406
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 48/78 (61%), Gaps = 3/78 (3%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+K+ KT++ F ++ + D V+D+KK I+ Q +P Q LI+ GK+L D +++E
Sbjct: 2 VKITFKTVQNKLFTVDAQDSDTVADLKKKIQETQ---TFPVENQKLIYSGKILNDASSVE 58
Query: 61 ENKVAENSFVVVMLTKSK 78
K+ E F+VVM+++ K
Sbjct: 59 SLKIKEKDFLVVMVSRPK 76
>gi|149248070|ref|XP_001528422.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
gi|146448376|gb|EDK42764.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
Length = 359
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/53 (56%), Positives = 36/53 (67%), Gaps = 3/53 (5%)
Query: 164 SNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE 216
S GS EAT+ I++MG +DR V ALRAA+NNP RAVEYL +GIPE
Sbjct: 61 STFALGSEREATILNIMEMG---YDRPQVEAALRAAFNNPHRAVEYLITGIPE 110
Score = 43.5 bits (101), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 28/43 (65%)
Query: 285 QFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLR 327
Q Q LR +Q+NP+++QP+L++L NP + +I E F+R
Sbjct: 232 QMQLLRAALQSNPELIQPLLEQLSASNPQIANMISEDPEGFIR 274
>gi|134107453|ref|XP_777611.1| hypothetical protein CNBA7320 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50260305|gb|EAL22964.1| hypothetical protein CNBA7320 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 404
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 47/76 (61%), Gaps = 3/76 (3%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+K+ KT++ F ++ + D V+D+KK I+ Q +P Q LI+ GK+L D +++E
Sbjct: 2 VKITFKTVQNKLFTVDAQDSDTVADLKKKIQETQ---TFPVENQKLIYSGKILNDASSVE 58
Query: 61 ENKVAENSFVVVMLTK 76
K+ E F+VVM+++
Sbjct: 59 SLKIKEKDFLVVMVSR 74
>gi|340959556|gb|EGS20737.1| putative excision repair protein [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 376
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 73/204 (35%), Positives = 101/204 (49%), Gaps = 31/204 (15%)
Query: 174 ATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAG 233
A + I +M ++R + A+RAA+NNPERAVEYL +GIP P + + + Q
Sbjct: 147 ARAEAIANMEAMGFERSQIDIAMRAAFNNPERAVEYLLNGIP-----PHLQQEA---QPS 198
Query: 234 NPPAQTQAQQPAAPAPTSGPNANPLDLFPQ-----------GLPNMGSNAGAGTLDFLRN 282
PA A AAPA N N DL Q G G G L++LR+
Sbjct: 199 RSPAGASAAPSAAPAAPEDDNVNLFDLAAQQGRGSGSRGASGAGAAAQQQGLGNLEWLRH 258
Query: 283 SQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLG 342
+ QFQ LR +VQ PQ+L+P+LQ L NP L +I + FL L++E G
Sbjct: 259 NSQFQQLRQVVQQQPQMLEPILQTLSASNPQLAHVIATNPDQFLELLSET---------G 309
Query: 343 QLASAMP---QAVTVTPEEREAIE 363
+ +P ++VT EER+AIE
Sbjct: 310 DDDAPLPPGAHQISVTEEERDAIE 333
>gi|37927447|pdb|1P98|A Chain A, High-Resolution Nmr Structure Of The Ubl-Domain Of
Hhr23a
gi|37927452|pdb|1P9D|U Chain U, High-Resolution Structure Of The Complex Of Hhr23a
Ubiquitin-Like Domain And The C-Terminal Ubiquitin-
Interacting Motif Of Proteasome Subunit S5a
Length = 78
Score = 60.1 bits (144), Expect = 2e-06, Method: Composition-based stats.
Identities = 28/76 (36%), Positives = 50/76 (65%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+ + +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D +
Sbjct: 3 VTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIR 62
Query: 61 ENKVAENSFVVVMLTK 76
+ ++ E +FVVVM+TK
Sbjct: 63 DYRIDEKNFVVVMVTK 78
>gi|76155958|gb|AAX27211.2| SJCHGC03112 protein [Schistosoma japonicum]
Length = 155
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 77/161 (47%), Gaps = 34/161 (21%)
Query: 53 LKDVTTLEENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTS 112
++D +L++ KV ++ FVVVM +VS P + A+ S TS T
Sbjct: 1 MEDSKSLKDYKVTDSGFVVVM------------SVSKLPRDIAKEAS----TSVLSNLTD 44
Query: 113 QTPAPTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNL 172
E P P+ +P + A P S+ ++ S+LV G +
Sbjct: 45 --------------EGKPMPSEKSPNVDVIESVNVATTP-STATNTLSFLKSSLVLGEDF 89
Query: 173 EATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 213
E+ VQ+++ MG +++ VI+A+RA +NNP+RA EYL SG
Sbjct: 90 ESVVQELVSMG---FEKPLVIQAMRAGFNNPDRAFEYLSSG 127
>gi|302680567|ref|XP_003029965.1| hypothetical protein SCHCODRAFT_68753 [Schizophyllum commune H4-8]
gi|300103656|gb|EFI95062.1| hypothetical protein SCHCODRAFT_68753 [Schizophyllum commune H4-8]
Length = 383
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/52 (53%), Positives = 39/52 (75%), Gaps = 3/52 (5%)
Query: 164 SNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 215
S+ V G+ L+ TV + +MG + RE V+RALRA++NNP+RAVEYL +GIP
Sbjct: 133 SSFVTGNVLQETVNNMTEMG---FPREQVLRALRASFNNPDRAVEYLMNGIP 181
>gi|290999563|ref|XP_002682349.1| rad23 protein [Naegleria gruberi]
gi|284095976|gb|EFC49605.1| rad23 protein [Naegleria gruberi]
Length = 385
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 70/159 (44%), Gaps = 28/159 (17%)
Query: 173 EATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQA 232
+ TVQQ L+MG +DR + ++A++ + A E+L SGIPE +
Sbjct: 153 DETVQQFLEMG---YDRNDIDECMKASFYDRATAAEFLISGIPENV------KQMMQENG 203
Query: 233 GNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTM 292
GN P P G A+ L G+ G D S Q LR
Sbjct: 204 GNLPT----------PPQGGSLASAL---------AGNQQGFSLRDLFTLSPQLNNLRNA 244
Query: 293 VQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINE 331
++ NP +L+ L + + +P L ++IQ + +FL +INE
Sbjct: 245 IRQNPTLLREFLTHVSQVSPELYQIIQSNPREFLEIINE 283
>gi|224003975|ref|XP_002291659.1| Rad23 like protein [Thalassiosira pseudonana CCMP1335]
gi|220973435|gb|EED91766.1| Rad23 like protein, partial [Thalassiosira pseudonana CCMP1335]
Length = 335
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 45/74 (60%), Gaps = 11/74 (14%)
Query: 277 LDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG 336
LD LR+ QF LR +VQ NP LQ +L ++G+Q P L++ I +Q +FL+++NEP
Sbjct: 216 LDALRSHPQFDDLRRLVQTNPSTLQAVLSQIGQQQPDLLQAINANQAEFLQMMNEP---- 271
Query: 337 EGNVLGQLASAMPQ 350
+ SAMPQ
Sbjct: 272 -------MISAMPQ 278
>gi|326469095|gb|EGD93104.1| UV excision repair protein [Trichophyton tonsurans CBS 112818]
Length = 381
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 40/92 (43%), Positives = 62/92 (67%), Gaps = 12/92 (13%)
Query: 275 GTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVE 334
G+L+FLRN+ FQ LR +VQ PQ+L+P+LQ++G NP L +LI ++Q FL+L++E V+
Sbjct: 258 GSLEFLRNNPHFQQLRQLVQQQPQMLEPILQQVGAGNPQLAQLIGQNQEQFLQLLSEDVD 317
Query: 335 GGEGNVLGQLASAMP---QAVTVTPEEREAIE 363
+ +P Q+++VT EER+AIE
Sbjct: 318 D---------ETQLPPGTQSISVTEEERDAIE 340
>gi|123454697|ref|XP_001315100.1| polyubiquitin [Trichomonas vaginalis G3]
gi|123479152|ref|XP_001322735.1| polyubiquitin [Trichomonas vaginalis G3]
gi|123479160|ref|XP_001322739.1| polyubiquitin [Trichomonas vaginalis G3]
gi|121897766|gb|EAY02877.1| polyubiquitin, putative [Trichomonas vaginalis G3]
gi|121905587|gb|EAY10512.1| polyubiquitin, putative [Trichomonas vaginalis G3]
gi|121905591|gb|EAY10516.1| polyubiquitin, putative [Trichomonas vaginalis G3]
Length = 77
Score = 58.2 bits (139), Expect = 6e-06, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G H +EV+P D++ DVK I+ +G P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQDKEG---IPPDQQRLIFAGKQLEDGNTLQ 57
Query: 61 ENKVAENSFVVVML 74
+ + ++S + ++L
Sbjct: 58 DYSIQKDSTLHLVL 71
>gi|302506096|ref|XP_003015005.1| hypothetical protein ARB_06765 [Arthroderma benhamiae CBS 112371]
gi|291178576|gb|EFE34365.1| hypothetical protein ARB_06765 [Arthroderma benhamiae CBS 112371]
Length = 380
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 40/92 (43%), Positives = 62/92 (67%), Gaps = 12/92 (13%)
Query: 275 GTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVE 334
G+L+FLRN+ FQ LR +VQ PQ+L+P+LQ++G NP L +LI ++Q FL+L++E V+
Sbjct: 257 GSLEFLRNNPHFQQLRQLVQQQPQMLEPILQQVGAGNPQLAQLIGQNQEQFLQLLSEDVD 316
Query: 335 GGEGNVLGQLASAMP---QAVTVTPEEREAIE 363
+ +P Q+++VT EER+AIE
Sbjct: 317 D---------ETQLPPGAQSISVTEEERDAIE 339
>gi|393217532|gb|EJD03021.1| UV excision repair protein Rad23 [Fomitiporia mediterranea MF3/22]
Length = 406
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 42/52 (80%), Gaps = 3/52 (5%)
Query: 164 SNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 215
++ ++G L+A++Q +++MG ++R V+RA++A++NNP+RAVEYL +GIP
Sbjct: 142 TSFLSGDALQASIQNMIEMG---FERAQVMRAMKASFNNPDRAVEYLMNGIP 190
>gi|302668202|ref|XP_003025675.1| hypothetical protein TRV_00140 [Trichophyton verrucosum HKI 0517]
gi|291189798|gb|EFE45064.1| hypothetical protein TRV_00140 [Trichophyton verrucosum HKI 0517]
Length = 379
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 40/92 (43%), Positives = 62/92 (67%), Gaps = 12/92 (13%)
Query: 275 GTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVE 334
G+L+FLRN+ FQ LR +VQ PQ+L+P+LQ++G NP L +LI ++Q FL+L++E V+
Sbjct: 256 GSLEFLRNNPHFQQLRQLVQQQPQMLEPILQQVGAGNPQLAQLIGQNQEQFLQLLSEDVD 315
Query: 335 GGEGNVLGQLASAMP---QAVTVTPEEREAIE 363
+ +P Q+++VT EER+AIE
Sbjct: 316 D---------ETQLPPGAQSISVTEEERDAIE 338
>gi|123398957|ref|XP_001301380.1| polyubiquitin [Trichomonas vaginalis G3]
gi|123497770|ref|XP_001327247.1| polyubiquitin [Trichomonas vaginalis G3]
gi|154420157|ref|XP_001583094.1| polyubiquitin [Trichomonas vaginalis G3]
gi|121882554|gb|EAX88450.1| polyubiquitin, putative [Trichomonas vaginalis G3]
gi|121910174|gb|EAY15024.1| polyubiquitin, putative [Trichomonas vaginalis G3]
gi|121917333|gb|EAY22108.1| polyubiquitin, putative [Trichomonas vaginalis G3]
Length = 132
Score = 57.8 bits (138), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G H +EV+P D++ DVK I+ +G P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQDKEG---IPPDQQRLIFAGKQLEDGNTLQ 57
Query: 61 ENKVAENSFVVVML 74
+ + ++S + ++L
Sbjct: 58 DYSIQKDSTLHLVL 71
>gi|296816959|ref|XP_002848816.1| nucleotide excision repair protein RAD23 [Arthroderma otae CBS
113480]
gi|238839269|gb|EEQ28931.1| nucleotide excision repair protein RAD23 [Arthroderma otae CBS
113480]
Length = 377
Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 39/92 (42%), Positives = 62/92 (67%), Gaps = 12/92 (13%)
Query: 275 GTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVE 334
G+L+FLRN+ FQ LR +VQ PQ+L+P+LQ++G NP L +LI ++Q FL+L++E ++
Sbjct: 254 GSLEFLRNNPHFQQLRQLVQQQPQMLEPILQQVGAGNPQLAQLIGQNQEQFLQLLSEDID 313
Query: 335 GGEGNVLGQLASAMP---QAVTVTPEEREAIE 363
+ +P Q+++VT EER+AIE
Sbjct: 314 D---------ETQLPPGAQSISVTEEERDAIE 336
>gi|154416733|ref|XP_001581388.1| ubiquitin [Trichomonas vaginalis G3]
gi|121915615|gb|EAY20402.1| ubiquitin, putative [Trichomonas vaginalis G3]
Length = 166
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G H +EV+P D++ DVK I+ +G P QQ LI GK L+D TL+
Sbjct: 35 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQDKEG---IPPDQQRLIFAGKQLEDGNTLQ 91
Query: 61 ENKVAENSFVVVML 74
+ + ++S + ++L
Sbjct: 92 DYSIQKDSTLHLVL 105
>gi|407416607|gb|EKF37719.1| UV excision repair RAD23-like protein, putative [Trypanosoma cruzi
marinkellei]
Length = 300
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 68/138 (49%), Gaps = 20/138 (14%)
Query: 195 ALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPN 254
ALRAAY NP+RAVE+L +GIP Q N PA P+ +S
Sbjct: 111 ALRAAYMNPDRAVEFLCTGIPSDVM-----------QRMNEPA-------INPSASSERM 152
Query: 255 ANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHL 314
++ D + ++ + + L QF +R++VQANP+ L ++Q+L +P +
Sbjct: 153 SSLTDRLTSHMRQ--DDSDSALYNALMQIPQFGEIRSIVQANPESLPTVVQQLRIHHPEV 210
Query: 315 MRLIQEHQTDFLRLINEP 332
+ LIQ+ FLR++ P
Sbjct: 211 IGLIQQDLEGFLRIMGNP 228
>gi|123390686|ref|XP_001299928.1| polyubiquitin [Trichomonas vaginalis G3]
gi|121880877|gb|EAX86998.1| polyubiquitin, putative [Trichomonas vaginalis G3]
Length = 186
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G H +EV+P D++ DVK I+ +G P QQ LI GK L+D TL+
Sbjct: 110 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQDKEG---IPPDQQRLIFAGKQLEDGNTLQ 166
Query: 61 ENKVAENSFVVVML 74
+ + ++S + ++L
Sbjct: 167 DYSIQKDSTLHLVL 180
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 43/70 (61%), Gaps = 3/70 (4%)
Query: 5 VKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKV 64
VKTL G H +EV+P D++ DVK I+ +G P QQ LI GK L+D TL++ +
Sbjct: 38 VKTLTGKHITLEVEPTDRIEDVKTKIQDKEG---IPPDQQRLIFAGKQLEDGNTLQDYSI 94
Query: 65 AENSFVVVML 74
++S + ++L
Sbjct: 95 QKDSTLHLVL 104
>gi|154416813|ref|XP_001581428.1| polyubiquitin [Trichomonas vaginalis G3]
gi|121915655|gb|EAY20442.1| polyubiquitin, putative [Trichomonas vaginalis G3]
Length = 147
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G H +EV+P D++ DVK I+ +G P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQDKEG---IPPDQQRLIFAGKQLEDGNTLQ 57
Query: 61 ENKVAENSFVVVML 74
+ + ++S + ++L
Sbjct: 58 DYSIQKDSTLHLVL 71
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 44/70 (62%), Gaps = 3/70 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G H +EV+P D++ DVK I+ +G P QQ LI GK L+D TL+
Sbjct: 77 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQDKEG---IPPDQQRLIFAGKQLEDGNTLQ 133
Query: 61 ENKVAENSFV 70
+ + ++S +
Sbjct: 134 DYSIQKDSIL 143
>gi|123390682|ref|XP_001299927.1| polyubiquitin [Trichomonas vaginalis G3]
gi|121880876|gb|EAX86997.1| polyubiquitin [Trichomonas vaginalis G3]
Length = 153
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G H +EV+P D++ DVK I+ +G P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQDKEG---IPPDQQRLIFAGKQLEDGNTLQ 57
Query: 61 ENKVAENSFVVVML 74
+ + ++S + ++L
Sbjct: 58 DYSIQKDSTLHLVL 71
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G H +EV+P D++ DVK I+ +G P QQ LI GK L+D TL+
Sbjct: 77 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQDKEG---IPPDQQRLIFAGKQLEDGNTLQ 133
Query: 61 ENKVAENSFVVVML 74
+ + ++S + ++L
Sbjct: 134 DYSIQKDSTLHLVL 147
>gi|440633766|gb|ELR03685.1| UV excision repair protein Rad23 [Geomyces destructans 20631-21]
Length = 397
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/91 (51%), Positives = 61/91 (67%), Gaps = 9/91 (9%)
Query: 275 GTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVE 334
G LD+LRN+ QFQ LR +VQ PQ+L+P+LQ +G NP L +LI +H FL+L+ E E
Sbjct: 273 GNLDWLRNNPQFQQLRQVVQQQPQMLEPILQSVGAGNPQLAQLIGQHPEQFLQLLGE--E 330
Query: 335 GGEGNVLGQLASAMPQA--VTVTPEEREAIE 363
G EG+ L A P A ++VTPEE EAIE
Sbjct: 331 GEEGDAL-----APPGATQISVTPEESEAIE 356
>gi|429327043|gb|AFZ78850.1| polyubiquitin [Coptotermes formosanus]
Length = 230
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G H +EV+P D++ DVK I+ +G P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQDKEG---IPPDQQRLIFAGKQLEDGNTLQ 57
Query: 61 ENKVAENSFVVVML 74
+ + ++S + ++L
Sbjct: 58 DYSIQKDSTLHLVL 71
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G H +EV+P D++ DVK I+ +G P QQ LI GK L+D TL+
Sbjct: 77 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQDKEG---IPPDQQRLIFAGKQLEDGNTLQ 133
Query: 61 ENKVAENSFVVVML 74
+ + ++S + ++L
Sbjct: 134 DYSIQKDSTLHLVL 147
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G H +EV+P D++ DVK I+ +G P QQ LI GK L+D TL+
Sbjct: 153 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQDKEG---IPPDQQRLIFAGKQLEDGNTLQ 209
Query: 61 ENKVAENSFVVVML 74
+ + ++S + ++L
Sbjct: 210 DYSIQKDSTLHLVL 223
>gi|123471218|ref|XP_001318810.1| polyubiquitin [Trichomonas vaginalis G3]
gi|123479158|ref|XP_001322738.1| polyubiquitin [Trichomonas vaginalis G3]
gi|123501326|ref|XP_001328048.1| polyubiquitin [Trichomonas vaginalis G3]
gi|121901578|gb|EAY06587.1| polyubiquitin, putative [Trichomonas vaginalis G3]
gi|121905590|gb|EAY10515.1| polyubiquitin, putative [Trichomonas vaginalis G3]
gi|121910986|gb|EAY15825.1| polyubiquitin, putative [Trichomonas vaginalis G3]
Length = 153
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G H +EV+P D++ DVK I+ +G P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQDKEG---IPPDQQRLIFAGKQLEDGNTLQ 57
Query: 61 ENKVAENSFVVVML 74
+ + ++S + ++L
Sbjct: 58 DYSIQKDSTLHLVL 71
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G H +EV+P D++ DVK I+ +G P QQ LI GK L+D TL+
Sbjct: 77 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQDKEG---IPPDQQRLIFAGKQLEDGNTLQ 133
Query: 61 ENKVAENSFVVVML 74
+ + ++S + ++L
Sbjct: 134 DYSIQKDSTLHLVL 147
>gi|1101011|gb|AAC46935.1| polyubiquitin, partial [Trichomonas vaginalis]
Length = 770
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G H +EV+P D++ DVK I+ +G P QQ LI GK L+D TL+
Sbjct: 10 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQDKEG---IPPDQQRLIFAGKQLEDGNTLQ 66
Query: 61 ENKVAENSFVVVML 74
+ + ++S + ++L
Sbjct: 67 DYSIQKDSTLHLVL 80
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G H +EV+P D++ DVK I+ +G P QQ LI GK L+D TL+
Sbjct: 86 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQDKEG---IPPDQQRLIFAGKQLEDGNTLQ 142
Query: 61 ENKVAENSFVVVML 74
+ + ++S + ++L
Sbjct: 143 DYSIQKDSTLHLVL 156
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G H +EV+P D++ DVK I+ +G P QQ LI GK L+D TL+
Sbjct: 162 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQDKEG---IPPDQQRLIFAGKQLEDGNTLQ 218
Query: 61 ENKVAENSFVVVML 74
+ + ++S + ++L
Sbjct: 219 DYSIQKDSTLHLVL 232
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G H +EV+P D++ DVK I+ +G P QQ LI GK L+D TL+
Sbjct: 238 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQDKEG---IPPDQQRLIFAGKQLEDGNTLQ 294
Query: 61 ENKVAENSFVVVML 74
+ + ++S + ++L
Sbjct: 295 DYSIQKDSTLHLVL 308
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G H +EV+P D++ DVK I+ +G P QQ LI GK L+D TL+
Sbjct: 314 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQDKEG---IPPDQQRLIFAGKQLEDGNTLQ 370
Query: 61 ENKVAENSFVVVML 74
+ + ++S + ++L
Sbjct: 371 DYSIQKDSTLHLVL 384
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G H +EV+P D++ DVK I+ +G P QQ LI GK L+D TL+
Sbjct: 390 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQDKEG---IPPDQQRLIFAGKQLEDGNTLQ 446
Query: 61 ENKVAENSFVVVML 74
+ + ++S + ++L
Sbjct: 447 DYSIQKDSTLHLVL 460
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G H +EV+P D++ DVK I+ +G P QQ LI GK L+D TL+
Sbjct: 466 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQDKEG---IPPDQQRLIFAGKQLEDGNTLQ 522
Query: 61 ENKVAENSFVVVML 74
+ + ++S + ++L
Sbjct: 523 DYSIQKDSTLHLVL 536
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G H +EV+P D++ DVK I+ +G P QQ LI GK L+D TL+
Sbjct: 542 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQDKEG---IPPDQQRLIFAGKQLEDGNTLQ 598
Query: 61 ENKVAENSFVVVML 74
+ + ++S + ++L
Sbjct: 599 DYSIQKDSTLHLVL 612
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G H +EV+P D++ DVK I+ +G P QQ LI GK L+D TL+
Sbjct: 618 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQDKEG---IPPDQQRLIFAGKQLEDGNTLQ 674
Query: 61 ENKVAENSFVVVML 74
+ + ++S + ++L
Sbjct: 675 DYSIQKDSTLHLVL 688
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G H +EV+P D++ DVK I+ +G P QQ LI GK L+D TL+
Sbjct: 694 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQVKEG---IPPDQQGLIFAGKQLEDGKTLQ 750
Query: 61 ENKVAENSFVVVML 74
+ + ++S + ++L
Sbjct: 751 DYSIQKDSTLHLVL 764
>gi|123445177|ref|XP_001311351.1| polyubiquitin [Trichomonas vaginalis G3]
gi|121893157|gb|EAX98421.1| polyubiquitin, putative [Trichomonas vaginalis G3]
Length = 229
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G H +EV+P D++ DVK I+ +G P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQDKEG---IPPDQQRLIFAGKQLEDGNTLQ 57
Query: 61 ENKVAENSFVVVML 74
+ + ++S + ++L
Sbjct: 58 DYSIQKDSTLHLVL 71
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G H +EV+P D++ DVK I+ +G P QQ LI GK L+D TL+
Sbjct: 77 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQDKEG---IPPDQQRLIFAGKQLEDGNTLQ 133
Query: 61 ENKVAENSFVVVML 74
+ + ++S + ++L
Sbjct: 134 DYSIQKDSTLHLVL 147
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G H +EV+P D++ DVK I+ +G P QQ LI GK L+D TL+
Sbjct: 153 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQDKEG---IPPDQQRLIFAGKQLEDGNTLQ 209
Query: 61 ENKVAENSFVVVML 74
+ + ++S + ++L
Sbjct: 210 DYSIQKDSTLHLVL 223
>gi|159162478|pdb|1IFY|A Chain A, Solution Structure Of The Internal Uba Domain Of Hhr23a
Length = 49
Score = 55.8 bits (133), Expect = 3e-05, Method: Composition-based stats.
Identities = 28/50 (56%), Positives = 36/50 (72%), Gaps = 3/50 (6%)
Query: 166 LVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 215
LV GS E + +I+ MG ++RE V+ ALRA+YNNP RAVEYL +GIP
Sbjct: 2 LVTGSEYETMLTEIMSMG---YERERVVAALRASYNNPHRAVEYLLTGIP 48
>gi|341889007|gb|EGT44942.1| CBN-RAD-23 protein [Caenorhabditis brenneri]
Length = 328
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
V +TL +F +E+ + +++VKK + T +G D P Q+ LI+ GK+L D T + +
Sbjct: 5 VAFRTLTQINFSLELNEDQTIAEVKKLVATEKGDDYAPELQK-LIYNGKILDDATKVADV 63
Query: 63 KVAENSFVVVMLTKSKVSSS 82
+ FVVVMLTK K + +
Sbjct: 64 GFDSSKFVVVMLTKKKAAET 83
>gi|328865496|gb|EGG13882.1| repC-binding protein A [Dictyostelium fasciculatum]
Length = 130
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 47/84 (55%), Gaps = 9/84 (10%)
Query: 280 LRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGN 339
LRN QF LR +Q NPQ++ +LQ+ + NP L+R I E+ +FLRL + + N
Sbjct: 17 LRNHPQFAVLREAIQRNPQVITELLQQYSQSNPQLVRQITENPQEFLRLFQDQQGAPQPN 76
Query: 340 VLGQLASAMPQAVTVTPEEREAIE 363
+ A+ VTPEER AIE
Sbjct: 77 QV---------AIQVTPEERAAIE 91
>gi|9955429|dbj|BAB12223.1| RAD23 homolog [Hydractinia echinata]
Length = 101
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 40/60 (66%)
Query: 272 AGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINE 331
+ L FLRN QFQ +R VQ +P+ L +LQE+G+ NP L++LI ++Q F+ L+NE
Sbjct: 1 SAVADLSFLRNLPQFQLMRDQVQEHPESLPQLLQEIGQSNPQLLQLISQNQEAFIALLNE 60
>gi|378730563|gb|EHY57022.1| UV excision repair protein Rad23 [Exophiala dermatitidis
NIH/UT8656]
Length = 405
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/90 (43%), Positives = 55/90 (61%), Gaps = 11/90 (12%)
Query: 277 LDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG 336
L+FLRNS FQ LR +VQ P +L+P LQ++ + NP L ++I + FL+L+ E EG
Sbjct: 285 LEFLRNSPHFQQLRQLVQQQPAMLEPFLQQVAEGNPQLAQMISLNPDQFLQLLAEDQEGD 344
Query: 337 EGNVLGQLASAMP---QAVTVTPEEREAIE 363
G +P A++VTPEER+AIE
Sbjct: 345 GG--------PLPPGSTAISVTPEERDAIE 366
>gi|145499454|ref|XP_001435712.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124402847|emb|CAK68315.1| unnamed protein product [Paramecium tetraurelia]
Length = 351
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 53/173 (30%), Positives = 81/173 (46%), Gaps = 49/173 (28%)
Query: 162 AASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP-EQTAV 220
+ + L++G + ++Q++ MG + RE + A++AA+NNP+RAVEYL +GIP T+
Sbjct: 124 SGTGLLSGPEYDKAIEQLMSMG---FQREECVNAMKAAFNNPDRAVEYLLNGIPPGVTSH 180
Query: 221 PPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFL 280
PP AS GQ PPA AQQP G PN
Sbjct: 181 PPAPVASGQGQ---PPA---AQQPV------------------GQPN------------- 203
Query: 281 RNSQQFQALRTMVQANPQILQPMLQELGK----QNPHLMRLIQEHQTDFLRLI 329
Q Q LR + Q NPQ + +L +L + NP L + ++ L+++
Sbjct: 204 ----QIQQLRQLYQQNPQAVLQLLPQLLQQIQQTNPELHAQVSQNPEMLLQML 252
>gi|310791559|gb|EFQ27086.1| UV excision repair protein Rad23 [Glomerella graminicola M1.001]
Length = 391
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 44/97 (45%), Positives = 58/97 (59%), Gaps = 16/97 (16%)
Query: 272 AGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINE 331
G G LDFLRN+ QFQ LR +VQ PQ+L+P+LQ+LG NP L +LI + FL+L+ E
Sbjct: 264 GGFGNLDFLRNNAQFQQLRQVVQQQPQMLEPILQQLGAGNPQLAQLIANNPDQFLQLLGE 323
Query: 332 PVEGGEGNVLGQLASAMP-----QAVTVTPEEREAIE 363
V+ +P QA+ VT EER+AIE
Sbjct: 324 EVD-----------DDVPLPPGAQAIQVTEEERDAIE 349
>gi|397637202|gb|EJK72575.1| hypothetical protein THAOC_05883 [Thalassiosira oceanica]
Length = 504
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 38/53 (71%)
Query: 281 RNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPV 333
RN QF +LR +VQ+NP LQ +L ++G+Q P L++ I +Q +FL ++NEPV
Sbjct: 307 RNHPQFDSLRRLVQSNPNALQQVLAQIGQQQPELLQAINANQQEFLAMMNEPV 359
>gi|343470186|emb|CCD17040.1| unnamed protein product, partial [Trypanosoma congolense IL3000]
Length = 230
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 58/209 (27%), Positives = 92/209 (44%), Gaps = 40/209 (19%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ +++L G E EV P+ KV D+K+ +E + Y + + VL+D+ T+
Sbjct: 56 MKIILRSLTGKEHEQEVTPDTKVQDIKRVLE-----EEYAPESLRICYNNSVLEDLETMG 110
Query: 61 ENKVAENSFVVVMLTKSK-----VSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTP 115
V + S V+V + K + V+ + T+S A Q Q + P + +
Sbjct: 111 NLGVGDKS-VLVFVGKKRTIQKLVAKAIEDTLSLASVGQTQEQN----VKEAPHVSEGSE 165
Query: 116 APTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLE-A 174
APT A S P + P+A APAP + S++ A ++ A
Sbjct: 166 APTTA---SAPTAGEQPSAETAAPAP-------------------RTGSSVAATQGVDPA 203
Query: 175 TVQQILDMGGGSWDRETVIRALRAAYNNP 203
+ I MG DR+ + ALRAAY NP
Sbjct: 204 LIDSIAAMGFE--DRDQIALALRAAYMNP 230
>gi|123454695|ref|XP_001315099.1| polyubiquitin [Trichomonas vaginalis G3]
gi|121897765|gb|EAY02876.1| polyubiquitin, putative [Trichomonas vaginalis G3]
Length = 153
Score = 54.3 bits (129), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G H +EV+P D++ DVK I Q + P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKHITLEVEPTDRIEDVKAKI---QDKEDIPPDQQRLIFAGKQLEDGNTLQ 57
Query: 61 ENKVAENSFVVVML 74
+ + ++S + ++L
Sbjct: 58 DYSIQKDSTLHLVL 71
Score = 54.3 bits (129), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G H +EV+P D++ DVK I Q + P QQ LI GK L+D TL+
Sbjct: 77 MQIFVKTLTGKHITLEVEPTDRIEDVKAKI---QDKEDIPPDQQRLIFAGKQLEDGNTLQ 133
Query: 61 ENKVAENSFVVVML 74
+ + ++S + ++L
Sbjct: 134 DYSIQKDSTLHLVL 147
>gi|294886021|ref|XP_002771518.1| ubiquitin domain-containing protein DSK2, putative [Perkinsus
marinus ATCC 50983]
gi|239875222|gb|EER03334.1| ubiquitin domain-containing protein DSK2, putative [Perkinsus
marinus ATCC 50983]
Length = 334
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 36/64 (56%), Gaps = 3/64 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+ + K G+ FE PE + DVKKN G PA QQ LI++G++LKD T+
Sbjct: 3 INLIFKVSGGSSFEANFDPETTIGDVKKNCVKTSG---VPAEQQRLIYKGRILKDTDTIN 59
Query: 61 ENKV 64
++K+
Sbjct: 60 QHKI 63
>gi|299751880|ref|XP_002911697.1| hypothetical protein CC1G_06820 [Coprinopsis cinerea okayama7#130]
gi|298409576|gb|EFI28203.1| hypothetical protein CC1G_06820 [Coprinopsis cinerea okayama7#130]
Length = 377
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 40/56 (71%), Gaps = 3/56 (5%)
Query: 160 GQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 215
G + ++G+ + VQ +++MG + +E V+RA+RA++NNP+RAV+YL +GIP
Sbjct: 136 GFGTGSFLSGAAYQNAVQNLVEMG---FPQEQVVRAMRASFNNPDRAVDYLMNGIP 188
>gi|210076049|ref|XP_002143115.1| YALI0F18403p [Yarrowia lipolytica]
gi|199424967|emb|CAR65204.1| YALI0F18403p [Yarrowia lipolytica CLIB122]
Length = 77
Score = 53.5 bits (127), Expect = 2e-04, Method: Composition-based stats.
Identities = 28/64 (43%), Positives = 44/64 (68%), Gaps = 3/64 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ +KTL G E++V+PED++S +K+ IE ++G P +QQ L+ GK L+D T+
Sbjct: 1 MKIKIKTLIGKEIEMDVEPEDQISVLKEKIEELEG---IPPAQQRLVFTGKQLQDEKTIA 57
Query: 61 ENKV 64
ENK+
Sbjct: 58 ENKI 61
>gi|291407421|ref|XP_002719934.1| PREDICTED: UV excision repair protein RAD23 homolog B-like
[Oryctolagus cuniculus]
Length = 408
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 42/76 (55%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++ +K F I++ P V +K+ IE QG D +P + Q L++ G+VL D L
Sbjct: 1 MRLTLKAWPQLTFHIDIDPGQTVRALKEKIEAEQGRDAFPVAGQQLLYAGRVLPDDAVLR 60
Query: 61 ENKVAENSFVVVMLTK 76
+ ++ E+ V V++ +
Sbjct: 61 DCQIHEHHAVTVLVAR 76
>gi|294901159|ref|XP_002777264.1| ubiquitin domain-containing protein DSK2, putative [Perkinsus
marinus ATCC 50983]
gi|239884795|gb|EER09080.1| ubiquitin domain-containing protein DSK2, putative [Perkinsus
marinus ATCC 50983]
Length = 334
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 36/64 (56%), Gaps = 3/64 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+ + K G+ FE PE + DVKKN G PA QQ LI++G++LKD T+
Sbjct: 3 INLIFKVSGGSSFEASFDPETTIGDVKKNCVKTSG---VPAEQQRLIYKGRILKDTDTIN 59
Query: 61 ENKV 64
++K+
Sbjct: 60 QHKI 63
>gi|347964389|ref|XP_311268.5| AGAP000733-PA [Anopheles gambiae str. PEST]
gi|333467508|gb|EAA06820.6| AGAP000733-PA [Anopheles gambiae str. PEST]
Length = 390
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Query: 1 MKVFVKTLKGTHFEIEVKPE-DKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTL 59
MK+ +KTLK F +EV E D V +K+ + G YP +Q LI+ GK+++D L
Sbjct: 1 MKITLKTLKQQTFFVEVDVEQDTVRTLKEKLHAESGL-AYPVDRQRLIYLGKIMEDDHLL 59
Query: 60 EENKVAENSFVVVMLTK 76
+ K+ + F+VVM K
Sbjct: 60 SQYKLDDKKFIVVMSKK 76
>gi|254568464|ref|XP_002491342.1| hypothetical protein [Komagataella pastoris GS115]
gi|238031139|emb|CAY69062.1| hypothetical protein PAS_chr2-1_0892 [Komagataella pastoris GS115]
Length = 383
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 54/106 (50%), Gaps = 6/106 (5%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
++VF+K +E+ V P V + K I V SD+ PA +Q LI+ G+ LKD TL
Sbjct: 5 IQVFIKASGNQEYELTVDPSITVEEFKGKIAEV--SDI-PADRQRLIYSGRALKDADTLN 61
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTST 106
KV S + L KS + G S S A AN + +TS+ +T
Sbjct: 62 FYKV--QSGHTIHLVKSAPKNDGGS-ASVANANNSTSTSTGAANNT 104
>gi|302417214|ref|XP_003006438.1| nucleotide excision repair protein RAD23 [Verticillium albo-atrum
VaMs.102]
gi|261354040|gb|EEY16468.1| nucleotide excision repair protein RAD23 [Verticillium albo-atrum
VaMs.102]
Length = 394
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/92 (46%), Positives = 57/92 (61%), Gaps = 12/92 (13%)
Query: 275 GTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVE 334
G LDFLRN+ QFQ LR +VQ PQ+L+P+LQ+LG NP L +LI + FL L+ E V+
Sbjct: 268 GNLDFLRNNAQFQQLRQVVQQQPQMLEPILQQLGAGNPQLAQLIANNPDQFLSLLGEDVD 327
Query: 335 GGEGNVLGQLASAMP---QAVTVTPEEREAIE 363
+P QA++VT EER+AIE
Sbjct: 328 DD---------VPLPPGAQAISVTEEERDAIE 350
>gi|291407419|ref|XP_002719906.1| PREDICTED: RAD23B protein-like [Oryctolagus cuniculus]
Length = 527
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 37/64 (57%)
Query: 13 FEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVV 72
F I++ P V +K+ IE QG D +P + Q L++ G+VL D L + ++ E+ V V
Sbjct: 133 FHIDIDPGQTVRALKEKIEAEQGRDAFPVAGQQLLYAGRVLPDDAVLRDCQIHEHHAVTV 192
Query: 73 MLTK 76
++ +
Sbjct: 193 LVAR 196
>gi|321250146|ref|XP_003191705.1| uv excision repair protein rhp23 [Cryptococcus gattii WM276]
gi|317458172|gb|ADV19918.1| uv excision repair protein rhp23, putative [Cryptococcus gattii
WM276]
Length = 394
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 39/59 (66%), Gaps = 3/59 (5%)
Query: 20 EDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSK 78
++KV+D+KK I+ Q +P Q LI+ GK+L D +++E K+ E F+VVM+++ K
Sbjct: 10 QNKVADLKKKIQETQ---TFPVENQKLIYSGKILNDASSVESLKIKEKDFLVVMVSRPK 65
>gi|355715049|gb|AES05208.1| RAD23-like protein A [Mustela putorius furo]
Length = 102
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 60/106 (56%), Gaps = 23/106 (21%)
Query: 273 GAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP 332
G L+FLR+ QFQ +R ++Q NP +L +LQ+LG++NP L++ I HQ F++++NEP
Sbjct: 1 GENPLEFLRDQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEP 60
Query: 333 VEGGEGNVLGQLAS-------------AMPQA--VTVTPEEREAIE 363
G+LA PQ + VTP+E+EAIE
Sbjct: 61 P--------GELADISDVEGEGGAIGEEAPQMNYIQVTPQEKEAIE 98
>gi|405118128|gb|AFR92903.1| uv excision repair protein rhp23 [Cryptococcus neoformans var.
grubii H99]
Length = 390
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 39/59 (66%), Gaps = 3/59 (5%)
Query: 20 EDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSK 78
++KV+D+KK I+ Q +P Q LI+ GK+L D +++E K+ E F+VVM+++ K
Sbjct: 10 QNKVADLKKKIQETQ---TFPVENQKLIYSGKILNDASSVESLKIKEKDFLVVMVSRPK 65
>gi|281207509|gb|EFA81692.1| repC-binding protein A [Polysphondylium pallidum PN500]
Length = 124
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 49/99 (49%), Gaps = 18/99 (18%)
Query: 268 MGSNAGAG---TLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTD 324
M G G + LRN+ F LR +Q NP ++ +LQ+ + NP L+R I E+ +
Sbjct: 1 MAEAEGTGEPNIFEALRNNPHFPMLRETIQRNPAVIPELLQQFSQTNPGLVRQITENPQE 60
Query: 325 FLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEEREAIE 363
FLRL EP + A+ V+ EEREAIE
Sbjct: 61 FLRLFQEPQQV---------------AIQVSQEEREAIE 84
>gi|389633979|ref|XP_003714642.1| UV excision repair protein Rad23 [Magnaporthe oryzae 70-15]
gi|351646975|gb|EHA54835.1| UV excision repair protein Rad23 [Magnaporthe oryzae 70-15]
gi|440474553|gb|ELQ43290.1| hypothetical protein OOU_Y34scaffold00162g59 [Magnaporthe oryzae
Y34]
gi|440479744|gb|ELQ60492.1| hypothetical protein OOW_P131scaffold01287g24 [Magnaporthe oryzae
P131]
Length = 401
Score = 50.8 bits (120), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 42/92 (45%), Positives = 57/92 (61%), Gaps = 12/92 (13%)
Query: 275 GTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVE 334
G LDFLRN+ QFQ LR +VQ PQ+L+P+LQ+LG NP L +LI ++ FL L+ E +
Sbjct: 278 GNLDFLRNNTQFQQLRQVVQQQPQMLEPILQQLGAGNPQLAQLIAQNPEQFLALLGEDAD 337
Query: 335 GGEGNVLGQLASAMP---QAVTVTPEEREAIE 363
+ +P QA+ VT EER+AIE
Sbjct: 338 ED---------APLPPGAQAIAVTEEERDAIE 360
>gi|55669980|pdb|1TP4|A Chain A, Solution Structure Of The Xpc Binding Domain Of Hhr23a
Protein
Length = 97
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 44/61 (72%)
Query: 272 AGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINE 331
AG L+FLR+ QFQ +R ++Q NP +L +LQ+LG++NP L++ I HQ F++++NE
Sbjct: 7 AGENPLEFLRDQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNE 66
Query: 332 P 332
P
Sbjct: 67 P 67
>gi|255080554|ref|XP_002503857.1| predicted protein [Micromonas sp. RCC299]
gi|226519124|gb|ACO65115.1| predicted protein [Micromonas sp. RCC299]
Length = 374
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 39/73 (53%), Gaps = 3/73 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV KTL FE + + + DV+ + Q PA + +LIH+GKVL D TL
Sbjct: 1 MKVAFKTLTNQKFEEDFADDASIGDVRAKLSETQK---IPAPEMVLIHKGKVLTDDATLA 57
Query: 61 ENKVAENSFVVVM 73
V E SF+V+M
Sbjct: 58 AAGVTEASFIVMM 70
>gi|346975858|gb|EGY19310.1| nucleotide excision repair protein RAD23 [Verticillium dahliae
VdLs.17]
Length = 394
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/93 (45%), Positives = 56/93 (60%), Gaps = 16/93 (17%)
Query: 276 TLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEG 335
LDFLRN+ QFQ LR +VQ PQ+L+P+LQ+LG NP L +LI + FL L+ E V+
Sbjct: 269 NLDFLRNNAQFQQLRQVVQQQPQMLEPILQQLGAGNPQLAQLIANNPDQFLSLLGEDVD- 327
Query: 336 GEGNVLGQLASAMP-----QAVTVTPEEREAIE 363
+P QA++VT EER+AIE
Sbjct: 328 ----------DDVPLPPGAQAISVTEEERDAIE 350
>gi|407926704|gb|EKG19665.1| Ubiquitin-associated/translation elongation factor EF1B
[Macrophomina phaseolina MS6]
Length = 383
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/90 (42%), Positives = 56/90 (62%), Gaps = 12/90 (13%)
Query: 277 LDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG 336
LDFLRN+ QFQ LR +VQ P +L+P+LQ++G+ NP L +LI +H FL L++E +
Sbjct: 264 LDFLRNNPQFQQLRQLVQQQPHMLEPILQQVGQGNPQLAQLIADHPEQFLSLLSEDHDDD 323
Query: 337 EGNVLGQLASAMP---QAVTVTPEEREAIE 363
+ +P Q V++T EE EAI+
Sbjct: 324 ---------TPLPPGAQVVSITEEESEAID 344
>gi|403370790|gb|EJY85262.1| Ubiquitin [Oxytricha trifallax]
Length = 411
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 57/141 (40%), Gaps = 20/141 (14%)
Query: 189 RETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQQPAAPA 248
R+ I ALRAA+NNP+RA EYL SG+ Q G G+ + +
Sbjct: 147 RDQCILALRAAFNNPDRAFEYLLSGVNLQALASQPGGQEGAGAGGDDMGDDYGDEEGSSD 206
Query: 249 PTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELG 308
P G NP Q PN F +R + +PQ Q + +L
Sbjct: 207 PFGGA-GNPFAALAQN-PN------------------FALIRQRILQDPQFYQQFMSQLQ 246
Query: 309 KQNPHLMRLIQEHQTDFLRLI 329
+ P L LIQ++ F+ LI
Sbjct: 247 QTQPQLFALIQQNPAAFMNLI 267
>gi|123504409|ref|XP_001328742.1| UBA/TS-N domain containing protein [Trichomonas vaginalis G3]
gi|121911689|gb|EAY16519.1| UBA/TS-N domain containing protein [Trichomonas vaginalis G3]
Length = 310
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 54/218 (24%), Positives = 89/218 (40%), Gaps = 49/218 (22%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ + G E+EV + ++DVKK I V+ + + + L+ + K LK +TL+
Sbjct: 1 MKIICQIFSGDKLELEVTEDQDINDVKKQISEVKNAKI---EEIKLLFKSKFLKSPSTLK 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E + ENS ++VM+ K + T PA + + AP QP T + P +A
Sbjct: 58 ECGITENSKLIVMVPNKKPAPPINKTTETKPAEE----NKAP---NQPEETKKIIQPEIA 110
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P +V + + P + E ++Q+
Sbjct: 111 PLPTVDKKSKIELPP-----------------------------------DFEDKIKQLQ 135
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSG-IPEQ 217
+G ++ RALR A N E A L SG IP++
Sbjct: 136 QLG---YEYSECSRALRVAGFNTEIAANILLSGSIPDE 170
>gi|390367531|ref|XP_783007.3| PREDICTED: ubiquilin-1-like [Strongylocentrotus purpuratus]
Length = 607
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 52/97 (53%), Gaps = 9/97 (9%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+ V VKT K IE+ P+ + ++K I + V Q LI GK+LKD TL+
Sbjct: 16 ISVVVKTPKDKE-TIEINPDSTIKELKDEISKKFSTTV---EQLCLIFAGKILKDNDTLK 71
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVS----AAPAN 93
+N + +N VV ++ +SK +G ST + A+PAN
Sbjct: 72 QNNIKDN-MVVHLVIRSKKDQAGTSTATTSSPASPAN 107
>gi|342883708|gb|EGU84158.1| hypothetical protein FOXB_05335 [Fusarium oxysporum Fo5176]
Length = 390
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/92 (44%), Positives = 57/92 (61%), Gaps = 12/92 (13%)
Query: 275 GTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVE 334
G LDFLR++ QFQ LR +VQ PQ+L+P+LQ+LG NP L LI + FL+L+ E +
Sbjct: 263 GNLDFLRHNAQFQQLRQVVQQQPQMLEPILQQLGAGNPQLAELIATNPDQFLQLLGEYAD 322
Query: 335 GGEGNVLGQLASAMP---QAVTVTPEEREAIE 363
+ +P QA++VT EER+AIE
Sbjct: 323 DD---------TPLPPGAQAISVTEEERDAIE 345
>gi|402087037|gb|EJT81935.1| UV excision repair protein Rad23 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 377
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/94 (44%), Positives = 56/94 (59%), Gaps = 16/94 (17%)
Query: 275 GTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVE 334
G LDFLRN+ QFQ LR +VQ PQ+L+P+LQ+LG NP L +LI + FL L+ E +
Sbjct: 253 GNLDFLRNNAQFQQLRQVVQQQPQMLEPILQQLGAGNPQLAQLIAANPEQFLGLLGEDAD 312
Query: 335 GGEGNVLGQLASAMP-----QAVTVTPEEREAIE 363
+P QA++VT EER+AIE
Sbjct: 313 -----------DDVPLPPGAQAISVTEEERDAIE 335
>gi|222064069|emb|CAQ86697.1| putative ubiquitin family protein (UBA/TS-N domain containing
protein) [Histomonas meleagridis]
Length = 257
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 49/144 (34%), Positives = 67/144 (46%), Gaps = 20/144 (13%)
Query: 98 TSSAPPTSTQPT--TTSQTPAPTVAPPQS-----VPESAPPPAAPAPAPAPAPAPAPA-- 148
TS + T+PT T + P P A P P+ PP PAP PAP
Sbjct: 7 TSGSKEFGTRPTQNTPEEAPKPQEALPAHEEPAPKPQEEAPPVHEEPAPKQQEDPAPQVQ 66
Query: 149 -PAPVSSVSDVYGQ----AASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNP 203
P P SV+ Q + S+ ++ S+L V QI+DMG D E +ALR +NN
Sbjct: 67 QPTPTISVTQPQHQTSHTSGSDALSFSDL---VDQIVDMGFSKADAE---KALRKNHNNV 120
Query: 204 ERAVEYLYSGIPEQTAVPPVARAS 227
RA+EYL SG + + + V + S
Sbjct: 121 TRAIEYLLSGATDDSELSFVRQNS 144
>gi|328352143|emb|CCA38542.1| mitochondrial intermediate peptidase [Komagataella pastoris CBS
7435]
Length = 1191
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 47/154 (30%), Positives = 68/154 (44%), Gaps = 13/154 (8%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
++VF+K +E+ V P V + K I V SD+ PA +Q LI+ G+ LKD TL
Sbjct: 813 IQVFIKASGNQEYELTVDPSITVEEFKGKIAEV--SDI-PADRQRLIYSGRALKDADTLN 869
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSS--APPTSTQPTTTSQ----- 113
KV + L KS + G S S A AN + +TS+ A TS+ P+ +
Sbjct: 870 FYKVQSGH--TIHLVKSAPKNDGGSA-SVANANNSTSTSTGAANNTSSAPSNIAAGQGAF 926
Query: 114 TPAPTVAPPQSVPESAPPPAAPAPAPAPAPAPAP 147
P + + P P+A P P P
Sbjct: 927 NPLAGLTGARYAGMDVPMPSASMFGPDGGMGPMP 960
>gi|448524417|ref|XP_003868982.1| ubiquitin-like polyubiquitin-binding protein [Candida orthopsilosis
Co 90-125]
gi|380353322|emb|CCG26078.1| ubiquitin-like polyubiquitin-binding protein [Candida
orthopsilosis]
Length = 359
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 55/105 (52%), Gaps = 4/105 (3%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+ V +K+ +EI K+S++K E + PAS Q LI+ GKVLKD T E
Sbjct: 4 ITVTIKSSGDKKYEITFNSSIKISELK---ELIAEKSSIPASSQRLIYSGKVLKDTETAE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTS 105
K+ +NS + ++ + + + A++ S+ AQT SS P++
Sbjct: 61 SYKI-QNSHTIHLVKSANAAPTPATSESSTTQTAAQTPSSNIPSN 104
>gi|146094144|ref|XP_001467183.1| UV excision repair RAD23-like protein [Leishmania infantum JPCM5]
gi|134071547|emb|CAM70236.1| UV excision repair RAD23-like protein [Leishmania infantum JPCM5]
Length = 429
Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 52/108 (48%), Gaps = 5/108 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV +KT+ G E++V+ + DVK+ +E D Y + L G VL+D L
Sbjct: 1 MKVILKTITGKQHEVDVEATSTILDVKRLLE-----DEYEPASLRLCFNGAVLEDSRMLA 55
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQP 108
+ V +N +V+ K K+ A + P +A SSAP +S P
Sbjct: 56 DAGVKDNDSLVLAGRKRKIPKPPAPQTAEPPKTEAAPESSAPASSATP 103
>gi|428168829|gb|EKX37769.1| high mobility group box fusion protein [Guillardia theta CCMP2712]
Length = 187
Score = 47.8 bits (112), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 52/102 (50%), Gaps = 4/102 (3%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+ D + VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDMVKSKIQDKEG---IPPDQQRLIFAGKQLEDGRTLA 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAP 102
+ + + S + ++L + + + G P + +SSAP
Sbjct: 58 DYNIQKESTLHLVL-RLRGGAEGREKRQTKPVEKFTISSSAP 98
>gi|401883698|gb|EJT47893.1| hypothetical protein A1Q1_03199 [Trichosporon asahii var. asahii
CBS 2479]
Length = 348
Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 45/90 (50%), Gaps = 15/90 (16%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQG---------- 50
MK+ KT+ F I+ + + +KK I+ Q +PA Q LI+ G
Sbjct: 1 MKITFKTVTNKLFSIDADESETIGGLKKKIQEAQS---FPAELQKLIYSGGYQCSAQTNI 57
Query: 51 --KVLKDVTTLEENKVAENSFVVVMLTKSK 78
K+LKD T+ + K+ E F+VVM++K K
Sbjct: 58 PGKILKDDATVGDLKIKEKDFLVVMVSKPK 87
Score = 41.2 bits (95), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 46/87 (52%), Gaps = 9/87 (10%)
Query: 280 LRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEH---QTDFLRLINEPVEGG 336
L NS Q Q +R VQ NP ++QP+LQ++ NP L +++ ++ D L + +E +GG
Sbjct: 228 LANSPQLQRIRQAVQENPALIQPLLQQIAASNPGLAQMLNQNPQALYDLLGVGDED-DGG 286
Query: 337 EGNVLGQLASAMPQAVTVTPEEREAIE 363
E A V +T EE A+E
Sbjct: 287 E-----DYGGAQVMHVNLTQEEAAAVE 308
>gi|398019764|ref|XP_003863046.1| UV excision repair RAD23-like protein [Leishmania donovani]
gi|322501277|emb|CBZ36356.1| UV excision repair RAD23-like protein [Leishmania donovani]
Length = 429
Score = 47.4 bits (111), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 52/108 (48%), Gaps = 5/108 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV +KT+ G E++V+ + DVK+ +E D Y + L G VL+D L
Sbjct: 1 MKVILKTITGKQHEVDVEATSTILDVKRLLE-----DEYEPASLRLCFNGAVLEDSRMLA 55
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQP 108
+ V +N +V+ K K+ A + P +A SSAP +S P
Sbjct: 56 DAGVKDNDSLVLAGRKRKIPKPPAPQTAEPPKTEAAPESSAPASSATP 103
>gi|159475896|ref|XP_001696050.1| hypothetical protein CHLREDRAFT_80907 [Chlamydomonas reinhardtii]
gi|158275221|gb|EDP00999.1| predicted protein [Chlamydomonas reinhardtii]
Length = 370
Score = 47.0 bits (110), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ +T+ G F +E + + +K ++ Q A + L+++GKVL D TT+
Sbjct: 1 MKLTFRTIAGKSFNVEAEDSMTIGALKDKVQETQPDCTREAMK--LVYKGKVLDDATTVG 58
Query: 61 ENKVAENSFVVVML 74
+N+V E F+VV +
Sbjct: 59 DNQVTEQGFIVVFI 72
>gi|294872216|ref|XP_002766209.1| RAD 23B protein - channel catfish, putative [Perkinsus marinus
ATCC 50983]
gi|239866868|gb|EEQ98926.1| RAD 23B protein - channel catfish, putative [Perkinsus marinus
ATCC 50983]
Length = 350
Score = 47.0 bits (110), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 38/64 (59%), Gaps = 3/64 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+ + K G+ FE PE + DVKK V+ S V PA QQ LI++G++LKD T+
Sbjct: 3 INITFKVSGGSSFEQSFDPETTIGDVKKG--CVEKSGV-PAEQQRLIYKGRILKDADTVG 59
Query: 61 ENKV 64
++K+
Sbjct: 60 QHKI 63
>gi|406700023|gb|EKD03210.1| hypothetical protein A1Q2_02493 [Trichosporon asahii var. asahii
CBS 8904]
Length = 339
Score = 47.0 bits (110), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 15/88 (17%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQ----------- 49
MK+ KT+ F I+ + + +KK I+ Q +PA Q LI+
Sbjct: 1 MKITFKTVTNKLFSIDADESETIGGLKKKIQEAQS---FPAELQKLIYSGGYQCSAQTNI 57
Query: 50 -GKVLKDVTTLEENKVAENSFVVVMLTK 76
GK+LKD T+ + K+ E F+VVM++K
Sbjct: 58 PGKILKDDATVGDLKIKEKDFLVVMVSK 85
Score = 40.8 bits (94), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 46/87 (52%), Gaps = 9/87 (10%)
Query: 280 LRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEH---QTDFLRLINEPVEGG 336
L NS Q Q +R VQ NP ++QP+LQ++ NP L +++ ++ D L + +E +GG
Sbjct: 219 LANSPQLQRIRQAVQENPALIQPLLQQIAASNPGLAQMLNQNPQALYDLLGVGDED-DGG 277
Query: 337 EGNVLGQLASAMPQAVTVTPEEREAIE 363
E A V +T EE A+E
Sbjct: 278 E-----DYGGAQVMHVNLTQEEAAAVE 299
>gi|123495684|ref|XP_001326794.1| Ubiquitin family protein [Trichomonas vaginalis G3]
gi|121909714|gb|EAY14571.1| Ubiquitin family protein [Trichomonas vaginalis G3]
Length = 330
Score = 47.0 bits (110), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 60/220 (27%), Positives = 93/220 (42%), Gaps = 38/220 (17%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V ++T+ G ++ V+P ++++K + + ++V P + LI+ K L D T+
Sbjct: 1 MEVSLRTISGVTYKQAVEPTTTIAELK--VLVSEKANVAPEGIK-LIYSAKFLDDSKTIA 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAP---PTSTQPTTTSQTPAP 117
E+ + +++ + SK A Q Q SS P P + AP
Sbjct: 58 ESNIQPGQAIIMHVQSSK------------NAKQPQKKSSEKRKSPKKESPIKVQEAAAP 105
Query: 118 TVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQ 177
AP Q E+ P P + AP P +A LV N A VQ
Sbjct: 106 --APTQPKEEATQKPEQPGHSMV-----APLPE---------LEAKHQLVDPPNFNALVQ 149
Query: 178 QILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG-IPE 216
+ +MG D ALRAA NP+RA E+L + IPE
Sbjct: 150 TLTEMGFSEGD---AAHALRAAVYNPDRAAEFLLTNYIPE 186
>gi|294886433|ref|XP_002771708.1| Deubiquitination-protection protein dph1, putative [Perkinsus
marinus ATCC 50983]
gi|239875444|gb|EER03524.1| Deubiquitination-protection protein dph1, putative [Perkinsus
marinus ATCC 50983]
Length = 348
Score = 47.0 bits (110), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 38/64 (59%), Gaps = 3/64 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+ + K G+ FE PE + DVKK V+ S V PA QQ LI++G++LKD T+
Sbjct: 3 INITFKVSGGSSFEQSFDPETTIGDVKKG--CVEKSGV-PAEQQRLIYKGRILKDADTVG 59
Query: 61 ENKV 64
++K+
Sbjct: 60 QHKI 63
>gi|119473613|ref|XP_001258682.1| hypothetical protein NFIA_001330 [Neosartorya fischeri NRRL 181]
gi|119406835|gb|EAW16785.1| conserved hypothetical protein [Neosartorya fischeri NRRL 181]
Length = 434
Score = 45.1 bits (105), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 66/164 (40%), Gaps = 9/164 (5%)
Query: 55 DVTTLEENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQT 114
D T L E F +T ++ ++ T +A+ T SA T S
Sbjct: 249 DGTILIERNDENERFYGRKVTVKEIMAAHVRTENASVRMLTHTLHSAQGDKQFDQTPSGV 308
Query: 115 PAPTVAPPQSV-PESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLE 173
PT P + PE A APA P + + + +L N E
Sbjct: 309 AVPTGPSPSDIAPEDLANSNLMAHGALAAPAQTATETPAT-----FNDRSVHLDGVQNEE 363
Query: 174 ATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQ 217
A V Q+ MG + R + RA+RAA NP+RAVEYL +G P+
Sbjct: 364 AVVAQMESMG---FARIDIDRAMRAASFNPDRAVEYLLNGFPDD 404
>gi|425772801|gb|EKV11188.1| RNA polymerase I specific transcription initiation factor Rrn7,
putative [Penicillium digitatum PHI26]
gi|425782032|gb|EKV19963.1| RNA polymerase I specific transcription initiation factor Rrn7,
putative [Penicillium digitatum Pd1]
Length = 770
Score = 44.7 bits (104), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 42/74 (56%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G ++V+ D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 606 MQIFVKTLTGKTITLDVESSDTIDNVKTKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 662
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 663 DYNIQKESTLHLVL 676
>gi|255074919|ref|XP_002501134.1| predicted protein [Micromonas sp. RCC299]
gi|226516397|gb|ACO62392.1| predicted protein [Micromonas sp. RCC299]
Length = 308
Score = 44.7 bits (104), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ VK G+ + V+ V ++K +E +D P++QQ LI++G VLKD TLE
Sbjct: 6 IHVKATSGSKITVSVELSTTVGELKTTLEAADKADT-PSAQQRLIYKGHVLKDEKTLESY 64
Query: 63 KVAENSFV 70
V E+ +
Sbjct: 65 GVGEDHVI 72
>gi|326469376|gb|EGD93385.1| deubiquitination-protection protein dph1 [Trichophyton tonsurans
CBS 112818]
Length = 476
Score = 44.7 bits (104), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 42/75 (56%), Gaps = 3/75 (4%)
Query: 5 VKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKV 64
VK+ F + +KP V+++K+ + + ++V P +Q LI+ G+VLKD TL +KV
Sbjct: 12 VKSSAEPKFSLTLKPSSTVAEIKQILAGEEYANV-PPERQRLIYSGRVLKDTDTLASHKV 70
Query: 65 AENSFVVVMLTKSKV 79
E + L KS V
Sbjct: 71 KEGH--TIHLVKSAV 83
>gi|326483042|gb|EGE07052.1| deubiquitination-protection protein dph1 [Trichophyton equinum
CBS 127.97]
Length = 478
Score = 44.3 bits (103), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 42/75 (56%), Gaps = 3/75 (4%)
Query: 5 VKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKV 64
VK+ F + +KP V+++K+ + + ++V P +Q LI+ G+VLKD TL +KV
Sbjct: 12 VKSSAEPKFSLTLKPSSTVAEIKQILAGEEYANV-PPERQRLIYSGRVLKDTDTLASHKV 70
Query: 65 AENSFVVVMLTKSKV 79
E + L KS V
Sbjct: 71 KEGH--TIHLVKSAV 83
>gi|408389579|gb|EKJ69020.1| hypothetical protein FPSE_10799 [Fusarium pseudograminearum CS3096]
Length = 115
Score = 44.3 bits (103), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 40/70 (57%), Gaps = 12/70 (17%)
Query: 297 PQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMP---QAVT 353
PQ+L+P+LQ+LG NP L LI + FL+L+ E + +P QA++
Sbjct: 12 PQMLEPILQQLGAGNPQLAELIASNPDQFLQLLGEYADDD---------VPLPPGAQAIS 62
Query: 354 VTPEEREAIE 363
VT EER+AIE
Sbjct: 63 VTEEERDAIE 72
>gi|378755317|gb|EHY65344.1| hypothetical protein NERG_01790 [Nematocida sp. 1 ERTm2]
Length = 306
Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 59/106 (55%), Gaps = 8/106 (7%)
Query: 1 MKVFVKTLKGTHFEIEVK-PEDKVSDVKKNI-ETVQGSDVYPASQQMLIHQGKVLKDVTT 58
MK+ VKT KG + +EV+ PE V +K+ I E Q P S+ LIH GK+LKD
Sbjct: 1 MKINVKTSKGEVYSVEVEGPESTVLALKEKISEQAQA----PVSKIRLIHVGKLLKDQEP 56
Query: 59 LEENKVAENSFVVVML--TKSKVSSSGASTVSAAPANQAQTTSSAP 102
L+ K+ ++S V +++ ++ K SS+ + + APA + S P
Sbjct: 57 LKTYKLEDDSMVHLVVPSSEKKASSTPSPAQAEAPAGEEAHASEVP 102
>gi|398407563|ref|XP_003855247.1| hypothetical protein MYCGRDRAFT_103502 [Zymoseptoria tritici
IPO323]
gi|339475131|gb|EGP90223.1| hypothetical protein MYCGRDRAFT_103502 [Zymoseptoria tritici
IPO323]
Length = 394
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 35/87 (40%), Positives = 56/87 (64%), Gaps = 7/87 (8%)
Query: 277 LDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG 336
LDFLRN+ QFQ LR +VQ P +L+P+LQ++ +P L ++I ++ F++L+ E G
Sbjct: 272 LDFLRNNPQFQQLRQVVQQQPGMLEPILQQVAAGSPQLAQIITQNPEQFMQLL---AEDG 328
Query: 337 EGNVLGQLASAMPQAVTVTPEEREAIE 363
+ + LA+ ++ VT EER+AIE
Sbjct: 329 DDD----LAAPPGGSIAVTEEERDAIE 351
>gi|302834487|ref|XP_002948806.1| hypothetical protein VOLCADRAFT_104016 [Volvox carteri f.
nagariensis]
gi|300265997|gb|EFJ50186.1| hypothetical protein VOLCADRAFT_104016 [Volvox carteri f.
nagariensis]
Length = 366
Score = 43.5 bits (101), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 43/74 (58%), Gaps = 2/74 (2%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ +T+ G F +E + + +K ++ Q D + + + L+++GKVL D TT+
Sbjct: 1 MKLTFRTIAGKSFSVEAEESLTIGALKDKVQEAQ-PDCHRDAMK-LVYKGKVLDDGTTVG 58
Query: 61 ENKVAENSFVVVML 74
+N++ E F+VV +
Sbjct: 59 DNQITEQGFIVVFV 72
>gi|401419818|ref|XP_003874398.1| putative ubiquitin-like protein [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322490634|emb|CBZ25896.1| putative ubiquitin-like protein [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 317
Score = 42.7 bits (99), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 62/114 (54%), Gaps = 10/114 (8%)
Query: 1 MKVFVKTLKGTHFEIEV-KPEDKVSDVKKNI-ETVQGSDVYPASQQMLIHQGKVLKDVTT 58
M V +K G +EV V++ KK I ET++ PAS+Q +I +GKVLKD
Sbjct: 1 MAVTIKLANGNQHTVEVPDFSITVAEFKKQIAETLE----IPASEQRIIMRGKVLKDDGV 56
Query: 59 LEENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTS 112
L + + + V+ + +SK S++ ST +A+ A +S+P + QP+TT+
Sbjct: 57 LSAIGMEDGN--VIHVVRSKKSAAVPSTTNASSTLAASDPTSSP--NVQPSTTT 106
>gi|116207852|ref|XP_001229735.1| hypothetical protein CHGG_03219 [Chaetomium globosum CBS 148.51]
gi|88183816|gb|EAQ91284.1| hypothetical protein CHGG_03219 [Chaetomium globosum CBS 148.51]
Length = 392
Score = 42.7 bits (99), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 38/90 (42%), Positives = 58/90 (64%), Gaps = 11/90 (12%)
Query: 277 LDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG 336
L++LR + QFQ LR +VQ PQ+L+P+LQ+LG NP L +LI ++ FL L++E GG
Sbjct: 268 LEWLRANAQFQQLRQVVQQQPQMLEPILQQLGAGNPQLAQLIAQNPDQFLSLLSE--SGG 325
Query: 337 EGNVLGQLASAMP---QAVTVTPEEREAIE 363
+ + + +P ++VT EER+AIE
Sbjct: 326 DDD------APLPPGAHQISVTEEERDAIE 349
>gi|308463692|ref|XP_003094118.1| hypothetical protein CRE_14291 [Caenorhabditis remanei]
gi|308248530|gb|EFO92482.1| hypothetical protein CRE_14291 [Caenorhabditis remanei]
Length = 518
Score = 42.4 bits (98), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 43/77 (55%), Gaps = 9/77 (11%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPAS---QQMLIHQGKVLKDVT 57
+KVFVK+ +E+E+ P+ VSD+K + + P + Q +I+ GK+LKD
Sbjct: 8 IKVFVKS-PTQKYEVEIAPDATVSDLKDKVLVL-----VPTANKEQICIIYTGKILKDEE 61
Query: 58 TLEENKVAENSFVVVML 74
TL NK+ + V +++
Sbjct: 62 TLSHNKIGDGHTVHLVI 78
>gi|401410066|ref|XP_003884481.1| hypothetical protein NCLIV_048800 [Neospora caninum Liverpool]
gi|325118899|emb|CBZ54451.1| hypothetical protein NCLIV_048800 [Neospora caninum Liverpool]
Length = 405
Score = 42.4 bits (98), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 68/142 (47%), Gaps = 7/142 (4%)
Query: 2 KVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEE 61
KV K GT F +E++PE V VK+ T P Q LI++G++LKD +
Sbjct: 5 KVTFKVSGGTQFVLELEPEWTVKQVKEKCAT---QTEIPVQAQRLIYKGRILKDDDLIST 61
Query: 62 NKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQT----PAP 117
+ V + + ++ + + V++S + +A + AQ + A T+ TS+T A
Sbjct: 62 HDVQDGHIIHLVKSAAAVAASSNTAPAAGATSAAQPSPDASGTNGSLGGTSRTASSLAAR 121
Query: 118 TVAPPQSVPESAPPPAAPAPAP 139
T + S ESAPP + P P
Sbjct: 122 TASTNASPAESAPPLSNPTADP 143
>gi|403216612|emb|CCK71108.1| hypothetical protein KNAG_0G00510 [Kazachstania naganishii CBS
8797]
Length = 375
Score = 42.0 bits (97), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 4/79 (5%)
Query: 1 MKVFVKTLKGTHFEIEVKPE-DKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTL 59
++V K K ++V E + V DVK+ + + D A Q LI GKVL+D
Sbjct: 2 VQVVFKDFKKNKETLDVDLEHESVKDVKEKLAAARDCD---AEQIKLIFSGKVLQDAKPF 58
Query: 60 EENKVAENSFVVVMLTKSK 78
E + EN V++M++K K
Sbjct: 59 AETGLKENDHVIMMVSKKK 77
>gi|149239781|ref|XP_001525766.1| deubiquitination-protection protein dph1 [Lodderomyces
elongisporus NRRL YB-4239]
gi|146449889|gb|EDK44145.1| deubiquitination-protection protein dph1 [Lodderomyces
elongisporus NRRL YB-4239]
Length = 382
Score = 41.6 bits (96), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 42/74 (56%), Gaps = 4/74 (5%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+ + +K+ FE+ P+ V ++K+ I T + PA+ Q LI+ GKVLKD T+E
Sbjct: 4 ITITIKSSGDQKFEVTFDPKITVLELKELIATKSST---PAASQRLIYSGKVLKDDQTVE 60
Query: 61 ENKVAENSFVVVML 74
KV +NS V ++
Sbjct: 61 SYKV-QNSHTVHLV 73
>gi|154345506|ref|XP_001568690.1| putative ubiquitin-like protein [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134066032|emb|CAM43817.1| putative ubiquitin-like protein [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 317
Score = 41.6 bits (96), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 66/136 (48%), Gaps = 17/136 (12%)
Query: 1 MKVFVKTLKGTHFEIEVKPED-KVSDVKKNI-ETVQGSDVYPASQQMLIHQGKVLKDVTT 58
M V +K G +EV + V++ K I ET+ PA +Q +I +GKVLKD
Sbjct: 1 MTVTIKLANGNQHTVEVADFNITVAEFKNQIAETL----AIPAEEQRIILRGKVLKDEGV 56
Query: 59 LEENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPT 118
L + + + + V+ +K V+++ A+ VS+ P TS +Q+PA T
Sbjct: 57 LSAIGMEDGNVIHVVRSKKSVATAPATNVSSTPGTSDTVTS----------LNTQSPA-T 105
Query: 119 VAPPQSVPESAPPPAA 134
VA ++P++ P A
Sbjct: 106 VATQPALPQATANPYA 121
>gi|440297658|gb|ELP90315.1| UV excision repair protein rad23, putative [Entamoeba invadens
IP1]
Length = 330
Score = 41.6 bits (96), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 45/78 (57%), Gaps = 4/78 (5%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVT-TL 59
MK+ VKT++GT E EV+ + +K+ I Q D S L+ + ++LKD T T+
Sbjct: 1 MKINVKTVQGTSSEYEVQDATTIGQLKEMIHEKQNIDAASIS---LVLKSRMLKDDTQTI 57
Query: 60 EENKVAENSFVVVMLTKS 77
+ + EN FV++++ K+
Sbjct: 58 QAVGIKENDFVIMVVRKN 75
>gi|221486256|gb|EEE24517.1| ubiquitin, putative [Toxoplasma gondii GT1]
Length = 399
Score = 41.6 bits (96), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Query: 2 KVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEE 61
KV K G+ F +E++PE V VK+ T P Q LI++G++LKD +
Sbjct: 5 KVTFKVSGGSQFVLELEPEWTVKQVKEKCAT---QTEIPVQAQRLIYKGRILKDADLIST 61
Query: 62 NKVAENSFV 70
+ V + +
Sbjct: 62 HDVQDGHII 70
>gi|237833513|ref|XP_002366054.1| ubiquitin, putative [Toxoplasma gondii ME49]
gi|211963718|gb|EEA98913.1| ubiquitin, putative [Toxoplasma gondii ME49]
gi|221508044|gb|EEE33631.1| ubiquitin, putative [Toxoplasma gondii VEG]
Length = 399
Score = 41.6 bits (96), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Query: 2 KVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEE 61
KV K G+ F +E++PE V VK+ T P Q LI++G++LKD +
Sbjct: 5 KVTFKVSGGSQFVLELEPEWTVKQVKEKCAT---QTEIPVQAQRLIYKGRILKDADLIST 61
Query: 62 NKVAENSFV 70
+ V + +
Sbjct: 62 HDVQDGHII 70
>gi|354548233|emb|CCE44970.1| hypothetical protein CPAR2_407730 [Candida parapsilosis]
Length = 364
Score = 41.6 bits (96), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+ V +K+ +E+ P K+S++K E V PA Q LI+ GKVLKD T E
Sbjct: 4 ITVTIKSSGDKKYEVTFNPSIKISELK---ELVAEKSSIPAPSQRLIYSGKVLKDTETAE 60
Query: 61 ENKV 64
K+
Sbjct: 61 SYKI 64
>gi|66808013|ref|XP_637729.1| repC-binding protein A [Dictyostelium discoideum AX4]
gi|74853451|sp|Q54LV1.1|RAD23_DICDI RecName: Full=UV excision repair protein RAD23 homolog; AltName:
Full=repC-binding protein A
gi|60466140|gb|EAL64203.1| repC-binding protein A [Dictyostelium discoideum AX4]
Length = 342
Score = 40.8 bits (94), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV +K + + EV + V+++K I S Q LI+ GK+L+D TLE
Sbjct: 1 MKVTIKNINKEIYVFEVNGDLTVAELKNLISEKHNQ---TPSWQTLIYSGKILEDKRTLE 57
Query: 61 ENKVAENSFVVVMLTK 76
+ ++ F+V+M+ K
Sbjct: 58 SYNITDSGFIVMMIKK 73
>gi|157876560|ref|XP_001686626.1| putative ubiquitin-like protein [Leishmania major strain Friedlin]
gi|68129701|emb|CAJ09007.1| putative ubiquitin-like protein [Leishmania major strain Friedlin]
Length = 317
Score = 40.4 bits (93), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 61/115 (53%), Gaps = 12/115 (10%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M V +K G+ +EV P+ ++ + + + ++ PAS+Q +I +GKVLKD L
Sbjct: 1 MAVTIKLANGSQHTVEV-PDFSITVAEFKKQIAEALEI-PASEQRIIMRGKVLKDDGVLS 58
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTST---QPTTTS 112
+ + + + V+ +K V+ ++ S+ T +++ PTS+ QP+TT+
Sbjct: 59 AIGMEDGNVIHVVRSKKNVAVPSSTNASS-------TLAASDPTSSPNVQPSTTT 106
>gi|238883910|gb|EEQ47548.1| conserved hypothetical protein [Candida albicans WO-1]
Length = 339
Score = 39.3 bits (90), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+ + +K+ +EI P VS +K+ + + SD+ PA Q LI+ GKVLKD T+
Sbjct: 5 ITITIKSSGDKKYEITFDPSITVSQLKELV--AEKSDI-PAGSQRLIYSGKVLKDTETVT 61
Query: 61 ENKV 64
KV
Sbjct: 62 SYKV 65
>gi|146103390|ref|XP_001469550.1| putative ubiquitin-like protein [Leishmania infantum JPCM5]
gi|134073920|emb|CAM72659.1| putative ubiquitin-like protein [Leishmania infantum JPCM5]
Length = 317
Score = 38.9 bits (89), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 78/153 (50%), Gaps = 18/153 (11%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVS--DVKKNI-ETVQGSDVYPASQQMLIHQGKVLKDVT 57
M V +K G+ +EV P+ V+ + KK I E ++ PAS+Q +I +GKVLKD
Sbjct: 1 MAVTIKLANGSQHTVEV-PDFSVTVAEFKKQIAEMLE----IPASEQRIIMRGKVLKDDA 55
Query: 58 TLEENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTS---QT 114
L + + S V+ + +SK S + AS+ +A+ A +S+P + QP+TT+
Sbjct: 56 VLSAIGMEDGS--VIHVVRSKKSGAAASSTNASSTLAASDPTSSP--NVQPSTTTPAQPV 111
Query: 115 PAPTVAPPQSVPES---APPPAAPAPAPAPAPA 144
PA T A P + S AP P P A PA
Sbjct: 112 PAQTAANPYAALMSNFGAPQTQQPVPGAAGFPA 144
>gi|68477671|ref|XP_717148.1| hypothetical protein CaO19.5345 [Candida albicans SC5314]
gi|68477834|ref|XP_717069.1| hypothetical protein CaO19.12805 [Candida albicans SC5314]
gi|46438766|gb|EAK98092.1| hypothetical protein CaO19.12805 [Candida albicans SC5314]
gi|46438848|gb|EAK98173.1| hypothetical protein CaO19.5345 [Candida albicans SC5314]
Length = 339
Score = 38.5 bits (88), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+ + +K+ +E+ P VS +K+ + + SD+ PA Q LI+ GKVLKD T+
Sbjct: 5 ITITIKSSGDKKYEVTFDPSITVSQLKELV--AEKSDI-PAGSQRLIYSGKVLKDTETVT 61
Query: 61 ENKV 64
KV
Sbjct: 62 SYKV 65
>gi|341892156|gb|EGT48091.1| hypothetical protein CAEBREN_08871 [Caenorhabditis brenneri]
Length = 684
Score = 38.1 bits (87), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 37/77 (48%), Positives = 43/77 (55%), Gaps = 6/77 (7%)
Query: 76 KSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP-QSVPESA-PPPA 133
K V+++ AS V PAN A T+ AP T+ P TT PAP PP + P SA PPA
Sbjct: 162 KPPVTTTPASAVKP-PANPAPNTTPAPNTTPAPNTT---PAPATKPPVTTTPASAVKPPA 217
Query: 134 APAPAPAPAPAPAPAPA 150
PAP PAP PAPA
Sbjct: 218 TPAPNTTPAPNTTPAPA 234
>gi|150864814|ref|XP_001383791.2| nucleotide excision repair protein (ubiquitin-like protein)
[Scheffersomyces stipitis CBS 6054]
gi|149386070|gb|ABN65762.2| nucleotide excision repair protein (ubiquitin-like protein)
[Scheffersomyces stipitis CBS 6054]
Length = 366
Score = 38.1 bits (87), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V K K +EV+ D V K+ + + + A Q ++ GKVL D TLE
Sbjct: 1 MQVIFKDFKKQKVPLEVELTDTVLATKEKLAAEKDCE---APQLKFVYSGKVLSDEKTLE 57
Query: 61 ENKVAENSFVVVMLT 75
E K+ E ++ M++
Sbjct: 58 EFKIKEGDSIIFMIS 72
>gi|281207510|gb|EFA81693.1| repC-binding protein A [Polysphondylium pallidum PN500]
Length = 220
Score = 38.1 bits (87), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 3/81 (3%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV ++ + + +V E+KV +K E + + + Q LI+ GK+L++ L
Sbjct: 1 MKVTIRNVNKEVYTFDVTGEEKVIQLK---EMIADKHKHLPTWQTLIYSGKILENDNQLS 57
Query: 61 ENKVAENSFVVVMLTKSKVSS 81
+ EN F+V M+ K K S
Sbjct: 58 TYNITENGFIVCMVKKPKEES 78
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.308 0.124 0.349
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,878,983,165
Number of Sequences: 23463169
Number of extensions: 287905785
Number of successful extensions: 8152397
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 34159
Number of HSP's successfully gapped in prelim test: 63315
Number of HSP's that attempted gapping in prelim test: 5355140
Number of HSP's gapped (non-prelim): 1401085
length of query: 364
length of database: 8,064,228,071
effective HSP length: 144
effective length of query: 220
effective length of database: 8,980,499,031
effective search space: 1975709786820
effective search space used: 1975709786820
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 77 (34.3 bits)