Query 017906
Match_columns 364
No_of_seqs 299 out of 1283
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 06:49:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017906.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017906hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1oqy_A HHR23A, UV excision rep 100.0 9E-66 3.1E-70 509.4 27.3 312 1-364 8-331 (368)
2 2qsf_X RAD23, UV excision repa 99.9 1.1E-25 3.7E-30 199.7 5.1 92 273-364 21-136 (171)
3 1pve_A HHR23B, UV excision rep 99.9 4.7E-25 1.6E-29 168.6 4.9 62 274-335 3-64 (72)
4 2f4m_B UV excision repair prot 99.9 6E-24 2E-28 157.9 8.4 59 275-333 2-60 (61)
5 3m62_B UV excision repair prot 99.8 1.7E-19 5.7E-24 148.7 8.2 78 1-81 2-79 (106)
6 1uel_A HHR23B, UV excision rep 99.8 3.1E-18 1.1E-22 138.1 12.3 78 1-81 1-81 (95)
7 4fbj_B NEDD8; effector-HOST ta 99.8 1.6E-18 5.6E-23 137.8 10.1 78 1-81 1-78 (88)
8 4dwf_A HLA-B-associated transc 99.8 1.4E-18 4.7E-23 138.1 9.7 75 1-79 6-80 (90)
9 3phx_B Ubiquitin-like protein 99.8 2E-18 6.7E-23 133.8 10.3 74 1-77 5-78 (79)
10 2wyq_A HHR23A, UV excision rep 99.7 5.1E-18 1.7E-22 133.0 10.2 76 1-79 6-84 (85)
11 2kk8_A Uncharacterized protein 99.7 3.8E-18 1.3E-22 134.9 9.4 72 1-75 11-83 (84)
12 3v6c_B Ubiquitin; structural g 99.7 4.4E-18 1.5E-22 135.8 9.7 74 1-77 18-91 (91)
13 4a20_A Ubiquitin-like protein 99.7 3.2E-18 1.1E-22 139.4 8.5 74 1-77 20-97 (98)
14 3plu_A Ubiquitin-like modifier 99.7 6E-18 2.1E-22 136.0 9.4 71 1-74 22-92 (93)
15 2lxa_A Ubiquitin-like protein 99.7 3E-18 1E-22 136.7 7.5 74 1-77 2-79 (87)
16 3k9o_B Ubiquitin, UBB+1; E2-25 99.7 1.1E-17 3.8E-22 134.2 10.9 77 1-80 2-78 (96)
17 1wx7_A Ubiquilin 3; ubiquitin- 99.7 1.9E-17 6.5E-22 136.0 11.7 76 1-80 18-93 (106)
18 4hcn_B Polyubiquitin, ubiquiti 99.7 1.3E-17 4.5E-22 135.1 10.1 75 1-78 23-97 (98)
19 1ndd_A NEDD8, protein (ubiquit 99.7 2.1E-17 7.3E-22 125.9 10.6 74 1-77 1-74 (76)
20 3dbh_I NEDD8; cell cycle, acti 99.7 9.9E-18 3.4E-22 132.0 8.9 75 1-78 13-87 (88)
21 2faz_A Ubiquitin-like containi 99.7 1.9E-17 6.5E-22 127.8 9.6 73 1-76 3-77 (78)
22 1uh6_A Ubiquitin-like 5; beta- 99.7 8.3E-18 2.8E-22 137.3 7.8 71 1-74 29-99 (100)
23 3a9j_A Ubiquitin; protein comp 99.7 3.7E-17 1.3E-21 124.6 10.8 75 1-78 1-75 (76)
24 3n3k_B Ubiquitin; hydrolase, p 99.7 2E-17 6.8E-22 129.3 9.3 76 1-79 4-79 (85)
25 1ttn_A DC-UBP, dendritic cell- 99.7 1.8E-17 6.1E-22 136.3 9.4 76 1-79 24-99 (106)
26 2dzi_A Ubiquitin-like protein 99.7 2.8E-17 9.5E-22 127.3 9.6 73 1-76 8-80 (81)
27 1wy8_A NP95-like ring finger p 99.7 5.4E-17 1.9E-21 128.4 11.4 76 1-79 8-85 (89)
28 2uyz_B Small ubiquitin-related 99.7 2.2E-17 7.6E-22 127.8 8.7 75 1-78 4-78 (79)
29 3mtn_B UBA80, ubcep1, ubiquiti 99.7 3.4E-17 1.2E-21 127.8 9.8 76 1-79 4-79 (85)
30 2hj8_A Interferon-induced 17 k 99.7 2.3E-17 7.9E-22 131.0 8.9 75 1-78 5-79 (88)
31 4eew_A Large proline-rich prot 99.7 2.8E-17 9.6E-22 129.9 9.4 71 1-75 18-88 (88)
32 1wh3_A 59 kDa 2'-5'-oligoadeny 99.7 4.5E-17 1.5E-21 128.2 10.4 75 1-78 8-82 (87)
33 1wgd_A Homocysteine-responsive 99.7 5E-17 1.7E-21 130.2 10.3 76 1-79 8-89 (93)
34 1sif_A Ubiquitin; hydrophobic 99.7 4.7E-17 1.6E-21 129.3 9.9 75 1-78 10-84 (88)
35 1v2y_A 3300001G02RIK protein; 99.7 2E-17 6.8E-22 136.3 7.9 77 1-80 8-100 (105)
36 1wia_A Hypothetical ubiquitin- 99.7 5.9E-17 2E-21 130.2 10.1 74 1-80 8-82 (95)
37 1wyw_B Ubiquitin-like protein 99.7 4.5E-17 1.6E-21 131.8 9.0 75 1-78 22-96 (97)
38 2kan_A Uncharacterized protein 99.7 8.8E-17 3E-21 129.6 10.5 75 1-79 16-91 (94)
39 1ify_A HHR23A, UV excision rep 99.7 2.3E-17 7.7E-22 117.8 5.5 49 165-216 1-49 (49)
40 2bwf_A Ubiquitin-like protein 99.7 1.3E-16 4.3E-21 122.4 10.1 71 1-75 5-75 (77)
41 1v5o_A 1700011N24RIK protein; 99.7 1.1E-16 3.7E-21 130.7 10.3 76 1-79 8-88 (102)
42 3vdz_A Ubiquitin-40S ribosomal 99.7 1.2E-16 4.2E-21 132.5 10.1 75 1-78 36-110 (111)
43 1yx5_B Ubiquitin; proteasome, 99.7 1.8E-16 6.3E-21 128.0 10.9 75 1-78 1-75 (98)
44 1wx8_A Riken cDNA 4931431F19; 99.7 7E-17 2.4E-21 129.9 8.0 75 1-79 18-92 (96)
45 1wju_A NEDD8 ultimate buster-1 99.7 1.4E-16 4.9E-21 130.0 9.8 71 2-75 17-91 (100)
46 2klc_A Ubiquilin-1; ubiquitin- 99.7 1.9E-16 6.6E-21 129.2 10.3 74 1-78 26-99 (101)
47 1yqb_A Ubiquilin 3; structural 99.7 1.5E-16 5.3E-21 129.6 9.5 75 1-79 23-97 (100)
48 1j8c_A Ubiquitin-like protein 99.7 2E-16 6.7E-21 134.2 10.2 76 1-80 33-108 (125)
49 3b1l_X E3 ubiquitin-protein li 99.5 4.7E-18 1.6E-22 130.4 0.0 75 1-78 1-75 (76)
50 1wgh_A Ubiquitin-like 3, HCG-1 99.7 3.1E-16 1.1E-20 131.3 10.9 75 1-76 17-99 (116)
51 2l7r_A Ubiquitin-like protein 99.7 2.4E-16 8.1E-21 126.6 9.4 73 1-78 20-92 (93)
52 3l0w_B Monoubiquitinated proli 99.6 6.1E-16 2.1E-20 137.6 11.7 77 1-80 1-77 (169)
53 1wgg_A Ubiquitin carboxyl-term 99.6 3.6E-16 1.2E-20 126.6 8.4 72 1-77 8-80 (96)
54 1x1m_A Ubiquitin-like protein 99.6 6.8E-16 2.3E-20 127.1 10.1 74 1-77 13-101 (107)
55 2ojr_A Ubiquitin; lanthide-bin 99.6 9.8E-16 3.3E-20 126.9 10.9 75 1-78 36-110 (111)
56 2fnj_B Transcription elongatio 99.6 5.3E-16 1.8E-20 130.1 8.4 72 1-75 1-80 (118)
57 2gow_A HCG-1 protein, ubiquiti 99.6 6.1E-16 2.1E-20 131.2 8.5 74 1-77 18-101 (125)
58 2kdi_A Ubiquitin, vacuolar pro 99.6 1.7E-15 5.7E-20 126.3 11.0 76 1-79 10-85 (114)
59 3rt3_B Ubiquitin-like protein 99.6 1.1E-15 3.8E-20 133.4 10.2 76 1-79 82-157 (159)
60 4ajy_B Transcription elongatio 99.6 7.3E-16 2.5E-20 129.0 8.3 73 1-76 1-81 (118)
61 1se9_A Ubiquitin family; ubiqu 99.6 1.1E-15 3.7E-20 129.6 9.5 79 1-79 17-106 (126)
62 2kdb_A Homocysteine-responsive 99.6 5.5E-16 1.9E-20 126.4 7.3 71 1-73 24-99 (99)
63 3m63_B Ubiquitin domain-contai 99.6 2.9E-16 1E-20 128.2 5.7 72 1-76 29-100 (101)
64 1v5t_A 8430435I17RIK protein; 99.6 1.4E-15 4.8E-20 121.4 9.5 72 1-76 8-83 (90)
65 1wxv_A BAG-family molecular ch 99.6 1.9E-15 6.6E-20 120.6 10.3 73 1-77 8-86 (92)
66 1we6_A Splicing factor, putati 99.6 1.2E-15 3.9E-20 126.4 8.5 76 1-79 28-107 (111)
67 3u30_A Ubiquitin, linear DI-ub 99.6 2.1E-15 7.1E-20 133.7 10.3 74 1-77 21-94 (172)
68 2kd0_A LRR repeats and ubiquit 99.6 2.8E-15 9.4E-20 118.5 9.6 70 3-75 14-83 (85)
69 3rt3_B Ubiquitin-like protein 99.6 2.8E-15 9.5E-20 130.9 10.3 73 1-76 3-77 (159)
70 3q3f_A Ribonuclease/ubiquitin 99.6 1.9E-15 6.6E-20 136.7 9.3 77 1-80 106-182 (189)
71 1v86_A DNA segment, CHR 7, way 99.6 1.3E-15 4.3E-20 123.0 7.1 71 1-76 18-88 (95)
72 4dbg_A Ranbp-type and C3HC4-ty 99.6 4.5E-15 1.5E-19 122.1 9.8 73 1-76 25-100 (105)
73 3u5e_m 60S ribosomal protein L 99.6 1.8E-16 6.3E-21 134.6 0.0 76 1-79 1-76 (128)
74 3b08_A Polyubiquitin-C, ubiqui 99.6 1.2E-14 4.2E-19 124.8 10.8 74 1-77 1-74 (152)
75 2daf_A FLJ35834 protein; hypot 99.6 1.1E-14 3.8E-19 121.4 9.9 74 2-78 17-91 (118)
76 3b08_A Polyubiquitin-C, ubiqui 99.5 1.7E-14 5.7E-19 124.0 10.5 75 1-78 77-151 (152)
77 3u30_A Ubiquitin, linear DI-ub 99.5 8.2E-15 2.8E-19 129.8 8.7 75 1-78 97-171 (172)
78 1we7_A SF3A1 protein; structur 99.5 2E-14 6.9E-19 119.7 10.2 76 1-79 26-111 (115)
79 3u5c_f 40S ribosomal protein S 99.5 1.1E-15 3.6E-20 133.9 1.0 76 1-79 1-76 (152)
80 2dzj_A Synaptic glycoprotein S 99.5 9E-15 3.1E-19 116.6 6.0 69 1-72 11-85 (88)
81 2dzm_A FAS-associated factor 1 99.5 2.6E-14 8.8E-19 116.7 7.1 71 1-75 9-81 (100)
82 3ai5_A Yeast enhanced green fl 99.5 1E-13 3.5E-18 133.8 9.5 74 1-77 234-307 (307)
83 4b6w_A Tubulin-specific chaper 99.4 1.5E-13 5E-18 109.1 6.0 73 2-77 4-85 (86)
84 1wf9_A NPL4 family protein; be 99.4 2.2E-13 7.4E-18 112.2 7.3 71 1-75 8-94 (107)
85 2kjr_A CG11242; UBL, ubiquitin 99.4 5.9E-13 2E-17 107.6 9.6 70 1-73 16-93 (95)
86 2kj6_A Tubulin folding cofacto 99.4 1.1E-12 3.8E-17 106.4 8.7 71 2-75 16-95 (97)
87 2xzm_9 RPS31E; ribosome, trans 99.4 4.2E-14 1.4E-18 127.6 0.3 71 1-79 1-71 (189)
88 1v6e_A Cytoskeleton-associated 99.4 1.4E-12 4.8E-17 104.9 8.1 73 1-76 8-88 (95)
89 2g3q_A Protein YBL047C; endocy 99.3 1E-12 3.5E-17 90.9 5.8 40 172-214 4-43 (43)
90 2kzr_A Ubiquitin thioesterase 99.3 1.3E-12 4.5E-17 103.1 7.1 71 1-75 1-77 (86)
91 1vej_A Riken cDNA 4931431F19; 99.3 1.2E-12 4.2E-17 100.7 6.4 46 169-217 26-72 (74)
92 1vg5_A RSGI RUH-014, rhomboid 99.3 1.2E-12 4E-17 100.7 6.3 44 169-215 26-69 (73)
93 2io1_B Small ubiquitin-related 99.3 3.1E-12 1E-16 103.2 8.5 76 1-79 8-83 (94)
94 2bwb_A Ubiquitin-like protein 99.3 1.6E-12 5.5E-17 91.4 5.3 40 171-213 6-46 (46)
95 2knz_A Ubiquilin-4; cytoplasm, 99.3 3.4E-12 1.2E-16 92.3 5.7 43 170-215 9-52 (53)
96 1wm3_A Ubiquitin-like protein 99.3 1.4E-11 4.7E-16 94.2 9.3 71 1-74 2-72 (72)
97 3shq_A UBLCP1; phosphatase, hy 99.3 3E-12 1E-16 124.6 6.9 72 1-76 6-80 (320)
98 1t0y_A Tubulin folding cofacto 99.3 1.2E-11 4E-16 104.1 8.8 74 1-77 7-88 (122)
99 2io0_B Small ubiquitin-related 99.3 1.9E-11 6.5E-16 98.0 9.5 75 1-78 6-80 (91)
100 1veg_A NEDD8 ultimate buster-1 99.2 7.3E-12 2.5E-16 98.4 6.1 44 172-218 29-75 (83)
101 2jy5_A Ubiquilin-1; UBA, alter 99.2 1E-11 3.5E-16 89.5 6.2 42 169-213 9-51 (52)
102 3a4r_A Nfatc2-interacting prot 99.2 4.2E-11 1.4E-15 93.3 10.1 70 1-73 8-78 (79)
103 2d07_B Ubiquitin-like protein 99.2 4.4E-11 1.5E-15 96.1 9.0 74 1-77 18-91 (93)
104 1wji_A Tudor domain containing 99.2 1.6E-11 5.6E-16 91.8 5.7 42 172-216 9-50 (63)
105 1wr1_B Ubiquitin-like protein 99.2 1.5E-11 5.2E-16 90.4 5.2 42 169-213 14-56 (58)
106 1wz0_A Ubiquitin-like protein 99.2 5.2E-11 1.8E-15 97.7 8.7 75 1-78 25-99 (104)
107 2dna_A Unnamed protein product 99.2 2.1E-11 7.3E-16 91.9 5.7 45 170-217 17-62 (67)
108 2dak_A Ubiquitin carboxyl-term 99.2 1.7E-11 5.9E-16 91.7 4.3 43 172-217 9-51 (63)
109 2k8h_A Small ubiquitin protein 99.1 8.1E-11 2.8E-15 97.5 7.8 75 1-78 27-101 (110)
110 2eke_C Ubiquitin-like protein 99.1 1.4E-10 4.9E-15 95.4 8.4 73 1-77 32-104 (106)
111 1wiv_A UBP14, ubiquitin-specif 99.1 7.1E-11 2.4E-15 90.9 5.7 41 172-215 29-69 (73)
112 2crn_A Ubash3A protein; compac 99.1 4.3E-11 1.5E-15 89.8 4.2 45 170-217 7-52 (64)
113 1z96_A DNA-damage, UBA-domain 99.1 7.3E-11 2.5E-15 79.9 4.9 38 171-211 3-40 (40)
114 2dag_A Ubiquitin carboxyl-term 99.1 1.1E-10 3.6E-15 90.2 5.9 43 172-217 9-52 (74)
115 1whc_A RSGI RUH-027, UBA/UBX 3 99.1 9.8E-11 3.3E-15 87.9 4.4 42 173-217 10-52 (64)
116 2ekk_A UBA domain from E3 ubiq 99.1 1.3E-10 4.4E-15 81.9 4.6 38 172-213 9-46 (47)
117 2cpw_A CBL-interacting protein 99.1 1E-10 3.4E-15 87.8 4.2 40 173-215 20-60 (64)
118 1wjn_A Tubulin-folding protein 99.0 1.2E-09 4E-14 87.9 8.2 72 2-76 11-93 (97)
119 2dai_A Ubadc1, ubiquitin assoc 99.0 4.7E-10 1.6E-14 88.3 5.6 43 172-217 29-71 (83)
120 1vek_A UBP14, ubiquitin-specif 99.0 5.4E-10 1.9E-14 88.2 5.6 43 172-217 29-72 (84)
121 1wgn_A UBAP1, ubiquitin associ 99.0 5.8E-10 2E-14 81.8 5.0 39 172-213 19-57 (63)
122 2dah_A Ubiquilin-3; UBA domain 98.9 1.5E-09 5.2E-14 78.6 5.4 41 171-214 8-49 (54)
123 2lbc_A Ubiquitin carboxyl-term 98.9 1.6E-09 5.5E-14 91.6 5.9 41 172-215 78-118 (126)
124 2cwb_A Chimera of immunoglobul 98.9 2.2E-09 7.5E-14 88.3 6.0 42 171-215 65-107 (108)
125 3kyd_D Small ubiquitin-related 98.8 1.5E-08 5E-13 84.5 9.6 73 1-76 41-113 (115)
126 2dkl_A Trinucleotide repeat co 98.8 5.1E-09 1.7E-13 82.8 5.4 38 173-213 22-59 (85)
127 1dv0_A DNA repair protein HHR2 98.7 2.8E-09 9.6E-14 75.1 1.3 41 171-214 3-43 (47)
128 2ooa_A E3 ubiquitin-protein li 98.6 4.7E-08 1.6E-12 69.4 5.1 38 172-212 11-48 (52)
129 3pge_A SUMO-modified prolifera 98.6 1.8E-07 6.1E-12 85.0 9.4 76 1-80 30-105 (200)
130 2d9s_A CBL E3 ubiquitin protei 98.5 8.6E-08 3E-12 68.3 5.2 38 172-212 9-46 (53)
131 3tix_A Ubiquitin-like protein 98.5 1.2E-07 4.2E-12 85.2 7.0 75 1-79 58-132 (207)
132 4ae4_A Ubiquitin-associated pr 98.5 7.6E-08 2.6E-12 80.5 4.7 39 172-213 76-114 (118)
133 2pjh_A Protein NPL4, nuclear p 98.5 8.1E-08 2.8E-12 74.9 4.3 69 1-73 5-78 (80)
134 2oo9_A E3 ubiquitin-protein li 98.5 2.2E-07 7.7E-12 64.0 5.4 41 169-212 1-41 (46)
135 3goe_A DNA repair protein RAD6 98.4 1.6E-06 5.5E-11 66.9 9.4 70 2-74 11-81 (82)
136 2juj_A E3 ubiquitin-protein li 98.4 4E-07 1.4E-11 65.0 5.0 39 172-213 7-45 (56)
137 3k9o_A Ubiquitin-conjugating e 98.3 5.3E-07 1.8E-11 81.8 5.2 43 167-212 158-200 (201)
138 2jxx_A Nfatc2-interacting prot 98.3 4E-06 1.4E-10 67.7 9.3 70 1-73 26-96 (97)
139 3v7o_A Minor nucleoprotein VP3 98.2 1.3E-07 4.6E-12 86.0 0.0 75 1-79 22-96 (227)
140 1wj7_A Hypothetical protein (R 98.2 1.9E-06 6.5E-11 70.0 6.0 44 170-216 37-81 (104)
141 4ae4_A Ubiquitin-associated pr 98.1 2.9E-06 9.8E-11 70.9 5.4 39 171-212 7-45 (118)
142 2l76_A Nfatc2-interacting prot 98.0 2.5E-05 8.4E-10 62.6 9.4 72 1-76 22-93 (95)
143 2cp8_A NEXT to BRCA1 gene 1 pr 98.0 4.7E-06 1.6E-10 59.9 4.4 42 169-213 6-48 (54)
144 2lbc_A Ubiquitin carboxyl-term 97.9 4.7E-06 1.6E-10 70.1 3.7 41 173-216 4-45 (126)
145 2qsf_X RAD23, UV excision repa 97.9 6.9E-06 2.4E-10 72.7 4.7 41 170-213 128-168 (171)
146 3uf8_A Ubiquitin-like protein 97.9 2.4E-05 8.1E-10 71.4 8.1 73 2-78 23-95 (209)
147 4efo_A Serine/threonine-protei 97.8 6.1E-05 2.1E-09 60.3 8.1 63 9-74 22-87 (94)
148 3ix6_A TS, tsase, thymidylate 97.7 5E-06 1.7E-10 81.6 0.0 74 1-78 22-95 (360)
149 2al3_A TUG long isoform; TUG U 97.7 0.0002 6.8E-09 56.8 8.5 74 1-77 10-83 (90)
150 2bps_A YUKD protein; ubiquitin 97.6 8.5E-05 2.9E-09 57.9 5.9 70 2-72 6-80 (81)
151 2kc2_A Talin-1, F1; FERM, adhe 97.6 0.00012 4.2E-09 61.8 7.0 68 2-72 13-119 (128)
152 1oqy_A HHR23A, UV excision rep 97.6 1.7E-05 5.9E-10 78.3 1.9 41 170-213 323-363 (368)
153 2cos_A Serine/threonine protei 97.6 9.4E-05 3.2E-09 52.8 5.0 39 171-212 8-47 (54)
154 4da1_A Protein phosphatase 1K, 97.5 1.6E-05 5.4E-10 78.7 0.0 73 2-78 32-104 (389)
155 3e46_A Ubiquitin-conjugating e 97.3 0.00018 6.2E-09 67.5 5.4 43 167-212 210-252 (253)
156 3qx1_A FAS-associated factor 1 97.3 0.00085 2.9E-08 52.1 8.1 68 2-73 9-81 (84)
157 2dzk_A UBX domain-containing p 97.3 0.0027 9.2E-08 51.9 10.9 71 2-75 15-90 (109)
158 1wj4_A KIAA0794 protein; UBX d 96.7 0.0038 1.3E-07 52.2 7.3 68 2-73 45-117 (124)
159 2cr5_A Reproduction 8; UBX dom 96.4 0.023 7.9E-07 46.2 10.0 68 2-73 25-96 (109)
160 1s3s_G P47 protein; AAA ATPase 96.3 0.015 5.2E-07 48.7 8.4 66 2-69 54-122 (127)
161 1wgl_A TOLL-interacting protei 95.9 0.0076 2.6E-07 44.0 4.2 39 172-213 9-49 (59)
162 2pwq_A Ubiquitin conjugating e 95.9 0.0014 4.8E-08 60.0 0.0 41 171-214 176-216 (216)
163 2daj_A KIAA0977 protein, COBL- 95.6 0.049 1.7E-06 42.5 7.8 70 2-77 12-84 (91)
164 1otr_A Protein CUE2; protein-p 95.3 0.024 8.2E-07 39.8 4.8 39 172-213 4-44 (49)
165 2l32_A Small archaeal modifier 95.3 0.05 1.7E-06 41.2 6.9 60 1-73 1-60 (74)
166 2dhy_A CUE domain-containing p 95.3 0.035 1.2E-06 41.5 5.9 45 168-213 14-58 (67)
167 4e71_A Plexin-B2, MM1; transme 94.7 0.2 6.8E-06 41.0 9.3 64 10-74 23-109 (111)
168 3ihp_A Ubiquitin carboxyl-term 94.7 0.024 8.2E-07 61.5 5.0 41 170-213 718-758 (854)
169 2di0_A Activating signal coint 94.5 0.11 3.6E-06 39.3 6.8 50 167-219 8-60 (71)
170 1ryj_A Unknown; beta/alpha pro 94.4 0.23 7.9E-06 36.8 8.5 61 1-74 5-65 (70)
171 2r2o_A Plexin-B1; effector dom 94.4 0.16 5.5E-06 43.1 8.3 65 11-76 41-129 (138)
172 2cp9_A EF-TS, EF-TSMT, elongat 93.9 0.093 3.2E-06 38.8 5.1 36 173-211 10-46 (64)
173 3jyu_A Ubiquitin carboxyl-term 93.4 0.41 1.4E-05 43.7 10.0 61 13-76 154-221 (231)
174 4a3p_A Ubiquitin carboxyl-term 93.2 0.33 1.1E-05 43.9 8.9 62 12-76 141-209 (217)
175 1vjk_A Molybdopterin convertin 93.1 0.57 1.9E-05 36.8 9.0 68 1-73 10-92 (98)
176 3rpf_C Molybdopterin convertin 92.2 0.38 1.3E-05 35.8 6.5 65 1-73 1-68 (74)
177 3h6n_A Plexin-D1; structural g 91.8 0.85 2.9E-05 38.1 8.8 65 10-75 16-104 (127)
178 4e74_A Plexin-A4; RBD, structu 91.3 0.65 2.2E-05 38.3 7.5 63 12-75 28-114 (117)
179 3ivf_A Talin-1; FERM domain, c 90.8 0.77 2.6E-05 44.4 8.8 71 2-73 5-82 (371)
180 1ip9_A BEM1 protein; ubiquitin 89.6 0.54 1.8E-05 36.6 5.2 44 1-50 13-57 (85)
181 3po0_A Small archaeal modifier 89.1 2.6 8.8E-05 32.1 9.0 58 11-73 18-83 (89)
182 1oey_A P67-PHOX, neutrophil cy 88.8 0.7 2.4E-05 35.8 5.4 45 3-50 6-50 (83)
183 1ef1_A Moesin; membrane, FERM 88.0 2.1 7.1E-05 39.7 9.2 75 1-78 2-81 (294)
184 1tyg_B YJBS; alpha beta barrel 87.9 0.68 2.3E-05 36.1 4.9 57 8-74 25-82 (87)
185 4dbg_B Ring finger protein 31; 87.8 0.35 1.2E-05 41.9 3.4 38 172-211 102-139 (162)
186 1h4r_A Merlin; FERM, neurofibr 87.4 2.4 8.1E-05 39.8 9.3 74 1-77 23-100 (314)
187 2juo_A GA-binding protein alph 87.3 1.7 5.9E-05 33.7 6.6 61 13-76 5-65 (89)
188 3ihp_A Ubiquitin carboxyl-term 87.2 0.43 1.5E-05 51.7 4.5 42 172-216 652-694 (854)
189 2llw_A Heat shock protein STI1 86.3 0.7 2.4E-05 34.7 3.9 36 279-319 24-59 (71)
190 1q02_A Sequestosome 1; helical 86.0 0.67 2.3E-05 32.7 3.4 38 171-211 9-48 (52)
191 2kmm_A Guanosine-3',5'-BIS(dip 85.5 1.8 6E-05 31.5 5.9 62 1-74 1-62 (73)
192 2kl0_A Putative thiamin biosyn 85.2 0.83 2.8E-05 34.2 3.9 60 1-74 1-60 (73)
193 3dwg_C 9.5 kDa culture filtrat 85.2 2.3 8E-05 32.7 6.7 71 1-73 1-87 (93)
194 2k5p_A THis protein, thiamine- 84.7 0.97 3.3E-05 34.3 4.1 63 1-74 1-64 (78)
195 1f0z_A THis protein; ubiquitin 84.5 1.4 4.6E-05 32.0 4.7 60 1-73 1-60 (66)
196 1wgk_A Riken cDNA 2900073H19 p 84.3 1.1 3.8E-05 36.5 4.6 69 1-74 12-103 (114)
197 2lnm_A Protein TIC 40, chlorop 84.2 0.96 3.3E-05 32.8 3.7 45 277-330 14-58 (62)
198 2i1j_A Moesin; FERM, coiled-co 83.4 3.2 0.00011 42.9 8.6 76 1-79 5-85 (575)
199 3hm6_X Plexin-B1; structural g 81.5 4.3 0.00015 42.3 8.6 64 12-76 275-362 (644)
200 1ixs_A Holliday junction DNA h 80.9 1.1 3.6E-05 32.8 2.9 28 169-199 14-41 (62)
201 1vd2_A Protein kinase C, IOTA 80.7 4.6 0.00016 31.5 6.7 46 2-51 8-54 (89)
202 3onh_A Ubiquitin-activating en 80.4 4.8 0.00016 33.5 7.0 51 20-74 19-78 (127)
203 3ig3_A Plxna3 protein; plexin 80.2 6.3 0.00022 40.9 9.3 65 11-76 247-335 (627)
204 1ufz_A Hypothetical protein BA 79.9 3.8 0.00013 31.7 5.7 42 172-213 34-75 (83)
205 3ivf_A Talin-1; FERM domain, c 79.8 6.4 0.00022 37.8 8.9 70 2-73 87-165 (371)
206 1tte_A Ubiquitin-conjugating e 79.8 1.2 4E-05 40.5 3.4 23 173-198 170-192 (215)
207 2k9x_A Tburm1, uncharacterized 79.7 0.52 1.8E-05 38.3 0.9 68 1-73 5-96 (110)
208 3qij_A Protein 4.1; cytoskelet 79.5 6.9 0.00024 36.6 8.8 62 1-64 18-84 (296)
209 2qjl_A URM1, ubiquitin-related 79.1 2.8 9.5E-05 32.9 5.0 35 1-35 2-46 (99)
210 3kuz_A Plexin-C1; structural g 78.7 8 0.00027 32.1 7.8 60 11-73 39-124 (126)
211 1wgr_A Growth factor receptor- 77.4 8.4 0.00029 30.7 7.4 71 3-75 12-92 (100)
212 2l52_A Methanosarcina acetivor 77.3 8.7 0.0003 30.0 7.5 69 1-73 4-93 (99)
213 1fm0_D Molybdopterin convertin 75.8 15 0.00052 26.9 8.2 56 12-73 18-75 (81)
214 2q5w_D Molybdopterin convertin 74.7 6.1 0.00021 28.9 5.7 54 11-73 16-71 (77)
215 2cu3_A Unknown function protei 73.0 4.3 0.00015 29.1 4.2 56 8-74 4-59 (64)
216 2ns5_A Partitioning-defective 71.9 30 0.001 26.7 9.0 72 1-74 3-81 (85)
217 1p3q_Q VPS9P, vacuolar protein 70.9 1.8 6.3E-05 30.8 1.7 42 170-212 10-51 (54)
218 1aip_C EF-TS, elongation facto 70.8 4.8 0.00016 36.0 4.9 37 173-212 4-41 (196)
219 1xb2_B EF-TS, elongation facto 69.1 5 0.00017 38.0 4.9 36 174-212 6-42 (291)
220 2c7h_A RBBP6, retinoblastoma-b 67.7 17 0.00057 28.2 6.7 45 2-49 8-55 (86)
221 1y8x_B Ubiquitin-activating en 66.1 4.7 0.00016 32.0 3.4 59 12-73 6-82 (98)
222 1tr8_A Conserved protein (MTH1 65.7 6.7 0.00023 31.4 4.3 36 173-211 66-102 (102)
223 2llv_A Heat shock protein STI1 65.6 2.7 9.3E-05 31.2 1.8 36 280-320 28-64 (71)
224 4eut_A Serine/threonine-protei 63.9 24 0.00081 33.5 8.7 51 11-64 322-374 (396)
225 2kvr_A Ubiquitin carboxyl-term 61.8 6.5 0.00022 32.6 3.7 33 13-48 58-90 (130)
226 1wgy_A RAP guanine nucleotide 60.8 33 0.0011 27.4 7.5 69 4-75 13-86 (104)
227 1v92_A NSFL1 cofactor P47; 3-h 60.4 19 0.00064 23.7 5.2 38 172-211 5-42 (46)
228 2g1e_A Hypothetical protein TA 59.4 26 0.00088 26.1 6.6 59 14-73 18-84 (90)
229 3qa8_A MGC80376 protein; kinas 58.5 10 0.00035 39.9 5.3 51 9-62 320-371 (676)
230 3hvz_A Uncharacterized protein 58.0 26 0.00089 26.3 6.2 63 2-76 7-69 (78)
231 1ltl_A DNA replication initiat 57.3 6.1 0.00021 36.8 3.0 56 277-332 19-76 (279)
232 1rws_A Hypothetical protein PF 56.5 3.9 0.00013 30.5 1.3 48 14-73 24-71 (77)
233 2inc_C TOUB protein; DIIRON, 4 53.3 66 0.0023 24.7 7.7 62 13-75 15-82 (83)
234 3ge3_C Toluene-4-monooxygenase 52.7 43 0.0015 25.7 6.6 61 13-74 17-82 (84)
235 2eel_A Cell death activator CI 50.8 86 0.0029 24.4 8.9 50 21-76 28-79 (91)
236 2kmc_A Fermitin family homolog 50.7 92 0.0032 24.7 9.9 73 2-75 21-99 (102)
237 2dal_A Protein KIAA0794; FAS a 50.5 23 0.00078 25.4 4.6 40 171-212 14-53 (62)
238 3au4_A Myosin-X; protein-prote 49.7 29 0.001 35.1 7.0 58 1-61 217-280 (555)
239 4g3o_A E3 ubiquitin-protein li 49.6 36 0.0012 24.4 5.3 43 167-213 12-56 (58)
240 3mva_O Transcription terminati 49.4 12 0.0004 35.7 3.7 37 172-211 19-59 (343)
241 4dbg_B Ring finger protein 31; 48.8 14 0.00049 31.8 3.7 28 184-211 72-99 (162)
242 3w1s_C Ubiquitin-like protein 48.8 87 0.003 24.2 8.0 59 13-76 25-86 (91)
243 2ylm_A Ubiquitin carboxyl-term 48.7 49 0.0017 33.6 8.4 58 12-72 353-418 (530)
244 1eo6_A GATE-16, golgi-associat 48.1 87 0.003 25.2 8.3 59 15-76 49-111 (117)
245 2l9b_A MRNA 3'-END-processing 47.1 18 0.00063 29.2 3.9 31 286-320 58-88 (109)
246 2hj1_A Hypothetical protein; s 46.9 23 0.00079 27.8 4.4 59 11-74 26-84 (97)
247 3h9d_A ATG8, microtubule-assoc 46.8 86 0.003 25.5 8.1 59 15-76 52-114 (119)
248 3m95_A Autophagy related prote 46.4 63 0.0022 26.6 7.2 59 15-76 57-119 (125)
249 1b4u_A LIGA, LIGB, protocatech 45.5 19 0.00065 30.3 3.9 26 300-327 37-62 (139)
250 3rui_B Autophagy-related prote 44.9 95 0.0033 25.1 8.0 59 15-76 51-113 (118)
251 2r2q_A Gamma-aminobutyric acid 43.6 74 0.0025 25.3 7.1 58 15-75 48-109 (110)
252 2zjd_A Microtubule-associated 41.9 65 0.0022 26.6 6.7 59 15-76 57-120 (130)
253 3e7l_A Transcriptional regulat 41.8 29 0.001 24.4 4.0 42 164-215 4-45 (63)
254 1q1o_A Cell division control p 41.5 31 0.0011 27.3 4.4 26 10-35 22-47 (98)
255 2dhz_A RAP guanine nucleotide 41.4 63 0.0022 26.4 6.4 65 6-74 15-91 (120)
256 2vl6_A SSO MCM N-TER, minichro 41.2 5.5 0.00019 36.7 -0.0 56 277-332 15-77 (268)
257 2kna_A Baculoviral IAP repeat- 41.0 28 0.00097 27.6 4.2 36 175-213 30-72 (104)
258 4a6q_A Histone deacetylase com 40.5 1.2E+02 0.0042 25.5 8.2 63 13-77 56-140 (143)
259 1zoq_C CREB-binding protein, i 40.2 20 0.00067 24.4 2.5 26 285-310 18-43 (47)
260 3pvl_A Myosin VIIA isoform 1; 38.5 59 0.002 33.9 7.3 46 1-48 264-309 (655)
261 3hk0_A Growth factor receptor- 38.2 65 0.0022 29.6 6.8 57 3-62 11-74 (256)
262 3u52_E Phenol hydroxylase comp 38.2 96 0.0033 25.3 6.9 61 13-73 40-107 (119)
263 1f2r_I Inhibitor of caspase-ac 37.3 49 0.0017 26.3 4.9 49 21-75 37-89 (100)
264 4gmv_A RAS-associated and plec 37.1 1.1E+02 0.0038 28.5 8.2 69 3-73 34-112 (281)
265 3cz6_A DNA-binding protein RAP 35.3 36 0.0012 29.5 4.1 45 170-217 61-112 (168)
266 2kkc_A Sequestosome-1; P62, PB 35.2 69 0.0024 25.4 5.6 54 21-76 42-101 (102)
267 1wz3_A Autophagy 12B, ATG12B, 34.9 73 0.0025 24.9 5.6 58 14-76 31-91 (96)
268 3r8s_T 50S ribosomal protein L 34.8 76 0.0026 24.7 5.7 41 10-53 27-68 (93)
269 1v8c_A MOAD related protein; r 34.7 93 0.0032 26.6 6.8 56 14-73 17-81 (168)
270 2ktr_A Sequestosome-1; autopha 33.5 65 0.0022 26.3 5.2 54 21-76 57-116 (117)
271 4gdk_A Ubiquitin-like protein 33.3 94 0.0032 24.0 6.0 60 14-76 23-86 (91)
272 2ztd_A Holliday junction ATP-d 33.0 26 0.00088 31.5 3.0 26 172-200 164-189 (212)
273 1n62_A Carbon monoxide dehydro 31.2 35 0.0012 29.4 3.4 27 2-29 5-31 (166)
274 3hrd_D Nicotinate dehydrogenas 30.6 35 0.0012 29.2 3.3 27 1-28 4-30 (160)
275 2ekf_A Ancient ubiquitous prot 30.5 97 0.0033 22.3 5.1 40 170-213 11-52 (61)
276 1cuk_A RUVA protein; DNA repai 29.9 29 0.001 30.8 2.8 25 172-199 160-184 (203)
277 3lxf_A Ferredoxin; iron, iron- 29.7 54 0.0018 25.5 4.1 28 2-29 2-29 (104)
278 2dam_A ETEA protein; KIAA0887, 29.6 1.2E+02 0.0042 21.8 5.7 43 170-213 16-58 (67)
279 3f9v_A Minichromosome maintena 29.0 22 0.00076 36.5 2.1 48 285-332 24-71 (595)
280 1t3q_A Quinoline 2-oxidoreduct 28.9 39 0.0013 28.9 3.4 28 1-29 10-37 (168)
281 2ejs_A Autocrine motility fact 27.6 1.4E+02 0.0047 21.3 5.5 40 170-213 11-52 (58)
282 2nvu_B Maltose binding protein 27.5 81 0.0028 33.3 6.2 60 13-73 714-789 (805)
283 1ffv_A CUTS, iron-sulfur prote 27.4 44 0.0015 28.6 3.4 27 2-29 5-31 (163)
284 2ylm_A Ubiquitin carboxyl-term 27.2 54 0.0019 33.2 4.6 69 3-74 133-216 (530)
285 3myf_A Sensor protein; HPT, hi 27.2 54 0.0018 26.2 3.7 44 286-329 8-56 (119)
286 1vdl_A Ubiquitin carboxyl-term 26.5 1.6E+02 0.0054 22.2 5.8 41 172-213 24-64 (80)
287 4fp9_B Mterf domain-containing 26.3 45 0.0015 31.9 3.6 29 170-201 44-72 (335)
288 2dzl_A Protein FAM100B; UBA-li 25.9 1.3E+02 0.0045 21.6 5.3 36 174-212 19-55 (66)
289 3us6_A Histidine-containing ph 25.4 31 0.0011 29.0 2.1 37 284-320 25-62 (153)
290 3tve_T 50S ribosomal protein L 25.4 1E+02 0.0034 23.9 4.8 40 10-52 21-61 (92)
291 3iqt_A Signal transduction his 24.3 41 0.0014 27.2 2.5 35 286-320 17-51 (123)
292 1g2h_A Transcriptional regulat 24.2 29 0.001 24.3 1.4 26 187-215 21-46 (61)
293 2jx5_A GLUB(S27A); ubiquitin, 23.9 2E+02 0.0067 20.4 6.8 51 1-59 1-51 (69)
294 1pqs_A Cell division control p 23.8 59 0.002 24.4 3.1 36 12-50 3-43 (77)
295 2cu1_A Mitogen-activated prote 23.8 1.5E+02 0.0051 23.5 5.5 43 3-51 9-52 (103)
296 3tca_A Amyloid beta A4 precurs 22.4 1.5E+02 0.0051 26.5 6.3 34 3-36 37-70 (291)
297 1umq_A Photosynthetic apparatu 21.9 46 0.0016 25.1 2.2 27 187-215 41-67 (81)
298 1rm6_C 4-hydroxybenzoyl-COA re 21.8 55 0.0019 27.8 2.9 27 3-30 5-31 (161)
299 3ix1_A N-formyl-4-amino-5-amin 21.6 93 0.0032 27.7 4.7 38 291-332 198-235 (302)
300 2zjr_Q 50S ribosomal protein L 21.6 93 0.0032 24.3 4.0 37 12-51 24-61 (95)
301 2lgx_A Fermitin family homolog 21.2 48 0.0017 26.7 2.2 71 2-74 28-101 (112)
302 2qho_B E3 ubiquitin-protein li 21.0 1.1E+02 0.0039 21.1 3.7 37 173-212 10-48 (53)
303 3k6g_A Telomeric repeat-bindin 20.7 1.4E+02 0.0048 23.8 4.8 38 174-214 15-53 (111)
304 1oai_A Nuclear RNA export fact 20.4 1.9E+02 0.0064 20.4 5.1 44 171-217 6-55 (59)
305 2jrh_A Mitogen-activated prote 20.2 2.2E+02 0.0074 22.1 5.6 44 3-52 5-49 (94)
306 2nxo_A Hypothetical protein SC 20.0 1E+02 0.0035 27.7 4.6 40 290-333 194-233 (291)
No 1
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=100.00 E-value=9e-66 Score=509.40 Aligned_cols=312 Identities=34% Similarity=0.585 Sum_probs=211.4
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHH---hCCCCCCCCCeEEEeCCeecCCCCChhhhccCCCCEEEEEEecC
Q 017906 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETV---QGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKS 77 (364)
Q Consensus 1 MkI~VKtl~gk~~~ieV~~s~TV~dLK~kI~~~---~g~~~ip~~~qkLif~GkiL~D~~tL~d~gIk~~s~I~v~v~k~ 77 (364)
|+|+||+++|++|.|+|++++||.+||++|+.+ .| +++++|||||+||+|+|+++|++|+|+++++|++|+.|.
T Consensus 8 M~I~VKtl~Gk~~~leV~~~~TV~~LK~~I~~~~~~~g---ip~~~QrLiy~GK~L~D~~tL~dygI~~gstIv~lv~k~ 84 (368)
T 1oqy_A 8 VTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDA---FPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKT 84 (368)
T ss_dssp CCEEEEETTTEEEEECCCTTCBHHHHHHHHHHHTCSSS---CCSTEEEEESSSSEECSSSBTTTTCCCTTSCEEEEEECC
T ss_pred EEEEEEeCCCCEEEEEeCCCChHHHHHHHHHHHhCcCC---CChhheEEEECCeecCCcCCHHHcCCCCCCEEEEEEecC
Confidence 899999999999999999999999999999994 56 999999999999999999999999999999997787776
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 017906 78 KVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP--QSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSV 155 (364)
Q Consensus 78 k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (364)
+..+.....+...+.+++++ .++.+ +...+.+++...+. .+.+.. .+.+..+|..+...++..+.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~---~~~~~---~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~p~~~~~~~~~~~~ 151 (368)
T 1oqy_A 85 KAGQGTSAPPEASPTAAPES---STSFP---PAPTSGMSHPPPAAREDKSPSE-------ESAPTTSPESVSGSVPSSGS 151 (368)
T ss_dssp CSSSCCCCCSSCCCCCSSSC---CCSCC---CSSSCCCCCCCSSSSCCCCCSC-------SCCCCSSTTCSCCCSCSCCC
T ss_pred CCCCCCCCCcccCCCCCccc---cCCCC---CCCCCCCCCCCccccccCCccc-------cCCCCCCCCccccccccccc
Confidence 65433111111111110110 00000 00000000000000 000000 00000011111111111111
Q ss_pred ccccccccccccCCcchHHHHHHHHHcCCCCCCHHHHHHHHHHHcCChHHHHHHHHhCCCCCCCCCccccccCCCCCCCC
Q 017906 156 SDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNP 235 (364)
Q Consensus 156 ~~~~~~~~s~l~~g~~~e~~V~~i~~MG~~~f~r~qv~~ALrAafnNpdRAvEyL~~GIP~~~~~~~~~~~~~~~~~~~~ 235 (364)
...++.+.|+||+|+++|++|++||+|| |+|++|++|||++|||||||||||++|||++.+...+ . ..+
T Consensus 152 ~~~~~~~~s~l~~g~~~~~~i~~l~~MG---f~~~~~~~AL~a~~nn~~~A~e~L~~gip~~~~~~~~----~----~~~ 220 (368)
T 1oqy_A 152 SGREEDAASTLVTGSEYETMLTEIMSMG---YERERVVAALRASYNNPHRAVEYLLTGIPGSPEPEHG----S----VQE 220 (368)
T ss_dssp SCCCCCCCTTTCCTTTHHHHHHHHHTTT---CCSHHHHHHHHHSCSSTTHHHHTTTTSSTTCSSCCCC----C----CCC
T ss_pred ccccccccccccCCcchHHHHHHHHHcC---CCHHHHHHHHHHcCCCHHHHHHHHHhCCCcccccccC----C----ccc
Confidence 2335567899999999999999999999 9999999999999999999999999999987442210 0 000
Q ss_pred CCccccCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCchHhhhCcHHHHHHHHHHHhCccchHHHHHHHhhhCHHHH
Q 017906 236 PAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLM 315 (364)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~lf~~~~~~~~~~~~~~~l~~Lr~~pqf~~lR~~vq~nP~~L~~~Lqql~~~nP~L~ 315 (364)
. .. .... +.++++.++|+|||++|||++||++||+||++|++|||||+++||+|+
T Consensus 221 ~-~~--------~~~~----------------~~~~~~~~~l~~Lr~~pqf~~lR~~vq~nP~~l~~~lq~l~~~nP~l~ 275 (368)
T 1oqy_A 221 S-QV--------SEQP----------------ATEAAGENPLEFLRDQPQFQNMRQVIQQNPALLPALLQQLGQENPQLL 275 (368)
T ss_dssp C-CS--------SCCC----------------CSSCCSCCTTHHHHHSHHHHHHHHSTTTCTTHHHHHHTTTTTTCHHHH
T ss_pred c-cc--------cccc----------------CccccccchHHHHhcChHHHHHHHHHHhChHHHHHHHHHHHhhCHHHH
Confidence 0 00 0000 011234578999999999999999999999999999999999999999
Q ss_pred HHHHHCHHHHHHHhcCCCCCC-CCc----cccccc--CCCCcceecCHHHHhhcCC
Q 017906 316 RLIQEHQTDFLRLINEPVEGG-EGN----VLGQLA--SAMPQAVTVTPEEREAIEP 364 (364)
Q Consensus 316 ~~I~~n~e~Fl~~l~e~~~~~-~g~----~~~~~~--~~~~~~i~lT~ee~~AIeR 364 (364)
++|++||++||+||+++++++ .+. ..+..+ .....+|+||+||+++|+|
T Consensus 276 ~~I~~n~~~Fl~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~t~ee~eaI~r 331 (368)
T 1oqy_A 276 QQISRHQEQFIQMLNEPPGELADISDVEGEVGAIGEEAPQMNYIQVTPQEKEAIER 331 (368)
T ss_dssp HHHHHHHHHHHHHHHSCCCCSCSSCCCSSSSCCCSCCCTTCSSCCCCTTTHHHHHH
T ss_pred HHHHHCHHHHHHHHcCcccccccccccccccccccccCCccccccCCCcCHHHHHH
Confidence 999999999999999986431 110 011111 1123479999999999987
No 2
>2qsf_X RAD23, UV excision repair protein RAD23; alpha-beta structure, beta hairpin, transglutaminase fold, DNA-damage recognition, DNA repair; HET: DNA; 2.35A {Saccharomyces cerevisiae} PDB: 2qsg_X* 2qsh_X* 1x3z_B* 1x3w_B* 3esw_B*
Probab=99.91 E-value=1.1e-25 Score=199.65 Aligned_cols=92 Identities=25% Similarity=0.413 Sum_probs=67.7
Q ss_pred CCCchHhhh-CcHHHHHHHHHHHhCccchHHHHHHHhhhCHHHHHHHHHCHHHHHHHhcCCCCCC------------CCc
Q 017906 273 GAGTLDFLR-NSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG------------EGN 339 (364)
Q Consensus 273 ~~~~l~~Lr-~~pqf~~lR~~vq~nP~~L~~~Lqql~~~nP~L~~~I~~n~e~Fl~~l~e~~~~~------------~g~ 339 (364)
++++|++|| ++|||++||++||+||++|++|||||+++||+|+++|++||++||+|||++.++. +|.
T Consensus 21 ~~~~l~~L~~~~Pqf~qlRq~vqqNPqlL~~lLqqig~~NPqL~qlI~qNqe~Fl~mLnep~~~~~~~m~~~~~~~~~g~ 100 (171)
T 2qsf_X 21 QGGPPGSIGLTVEDLLSLRQVVSGNPEALAPLLENISARYPQLREHIMANPEVFVSMLLEAVGDNMQDVMEGADDMVEGE 100 (171)
T ss_dssp -------CCCCHHHHHHHHHHHHTCGGGHHHHHHHHHHHCTTHHHHHHHCHHHHHHHHHHCCC-----------------
T ss_pred ccCCHHHHHhcCHHHHHHHHHHHHCHHHHHHHHHHHHhhCHHHHHHHHHCHHHHHHHHhCcccchhhhhccccccccccc
Confidence 456899999 9999999999999999999999999999999999999999999999999886531 010
Q ss_pred ------cccccc-----CCCCcceecCHHHHhhcCC
Q 017906 340 ------VLGQLA-----SAMPQAVTVTPEEREAIEP 364 (364)
Q Consensus 340 ------~~~~~~-----~~~~~~i~lT~ee~~AIeR 364 (364)
..+..+ ...+.+|+||+||++||+|
T Consensus 101 ~~~~~~~~g~~~~~~~~~~~~~~i~~tpee~eaI~r 136 (171)
T 2qsf_X 101 DIEVTGEAAAAGLGQGEGEGSFQVDYTPEDDQAISR 136 (171)
T ss_dssp --------------------EECCCCCHHHHHHHHH
T ss_pred ccccccccccccccCCCCCCcccCCCCccHHHHHHH
Confidence 000000 1112479999999999987
No 3
>1pve_A HHR23B, UV excision repair protein RAD23 homolog B; XPC binding domain, solution structure, nucleotide excision repair, chaps, DNA binding protein; NMR {Homo sapiens} SCOP: a.189.1.1
Probab=99.91 E-value=4.7e-25 Score=168.64 Aligned_cols=62 Identities=44% Similarity=0.880 Sum_probs=59.2
Q ss_pred CCchHhhhCcHHHHHHHHHHHhCccchHHHHHHHhhhCHHHHHHHHHCHHHHHHHhcCCCCC
Q 017906 274 AGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEG 335 (364)
Q Consensus 274 ~~~l~~Lr~~pqf~~lR~~vq~nP~~L~~~Lqql~~~nP~L~~~I~~n~e~Fl~~l~e~~~~ 335 (364)
+++|+|||++|+|++||++||+||++|++|||+|+++||+|+++|++|||+||+||+|+.++
T Consensus 3 ~~~l~~Lr~~Pqf~qlR~~vqqNP~lL~~lLqqL~~~NPqL~q~I~~n~e~Fl~ll~e~~~~ 64 (72)
T 1pve_A 3 HMPLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQE 64 (72)
T ss_dssp TCTTGGGTTCTTTTTHHHHHTTCGGGHHHHHHHHHTTCHHHHHHHHTTHHHHHHHHHSCSCC
T ss_pred CchHHHHHcChHHHHHHHHHHHCHHHHHHHHHHHHhHCHHHHHHHHHCHHHHHHHHcCCccC
Confidence 45799999999999999999999999999999999999999999999999999999998764
No 4
>2f4m_B UV excision repair protein RAD23 homolog B; glycoproteins, ubiquitin-dependent protein degradation, NUCL excision repair, peptide:N-glycanase; 1.85A {Mus musculus} SCOP: a.189.1.1 PDB: 2f4o_B*
Probab=99.90 E-value=6e-24 Score=157.90 Aligned_cols=59 Identities=46% Similarity=0.935 Sum_probs=56.9
Q ss_pred CchHhhhCcHHHHHHHHHHHhCccchHHHHHHHhhhCHHHHHHHHHCHHHHHHHhcCCC
Q 017906 275 GTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPV 333 (364)
Q Consensus 275 ~~l~~Lr~~pqf~~lR~~vq~nP~~L~~~Lqql~~~nP~L~~~I~~n~e~Fl~~l~e~~ 333 (364)
++|+|||++|+|++||++||+||++|++|||+|+++||+|+++|++|||+||+||+|++
T Consensus 2 ~~l~~Lr~~Pqf~~lR~~vq~NP~~L~~lLqql~~~nP~l~~~I~~n~e~Fl~ll~e~~ 60 (61)
T 2f4m_B 2 HPLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPV 60 (61)
T ss_dssp CGGGGGTTCHHHHHHHHHHHHCGGGHHHHHHHHHHHCHHHHHHHHHSHHHHHHHHTSCC
T ss_pred chHHHHHcChHHHHHHHHHHHCHHHHHHHHHHHHhHCHHHHHHHHHCHHHHHHHHcccC
Confidence 46899999999999999999999999999999999999999999999999999999874
No 5
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.79 E-value=1.7e-19 Score=148.66 Aligned_cols=78 Identities=24% Similarity=0.397 Sum_probs=70.8
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCChhhhccCCCCEEEEEEecCCCC
Q 017906 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVS 80 (364)
Q Consensus 1 MkI~VKtl~gk~~~ieV~~s~TV~dLK~kI~~~~g~~~ip~~~qkLif~GkiL~D~~tL~d~gIk~~s~I~v~v~k~k~~ 80 (364)
|+|+||+++|++|.|+|++++||.+||++|+...| +++++|||+|+||+|+|+++|++|||++|++|+|++++++..
T Consensus 2 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~QrLi~~Gk~L~D~~tL~~~~i~~g~~i~lv~~~~~~~ 78 (106)
T 3m62_B 2 VSLTFKNFKKEKVPLDLEPSNTILETKTKLAQSIS---CEESQIKLIYSGKVLQDSKTVSECGLKDGDQVVFMVSQKKST 78 (106)
T ss_dssp -CEEEECTTCCEEEECCCTTSBHHHHHHHHHHTTT---SCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECCC----
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHC---CChhhEEEEECCEECCCcCCHHHcCCCCCCEEEEEEcCCCCC
Confidence 89999999999999999999999999999999999 999999999999999999999999999999999999877644
Q ss_pred C
Q 017906 81 S 81 (364)
Q Consensus 81 ~ 81 (364)
+
T Consensus 79 ~ 79 (106)
T 3m62_B 79 K 79 (106)
T ss_dssp -
T ss_pred C
Confidence 3
No 6
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.77 E-value=3.1e-18 Score=138.05 Aligned_cols=78 Identities=45% Similarity=0.705 Sum_probs=73.4
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHH---hCCCCCCCCCeEEEeCCeecCCCCChhhhccCCCCEEEEEEecC
Q 017906 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETV---QGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKS 77 (364)
Q Consensus 1 MkI~VKtl~gk~~~ieV~~s~TV~dLK~kI~~~---~g~~~ip~~~qkLif~GkiL~D~~tL~d~gIk~~s~I~v~v~k~ 77 (364)
|+|+||+++|+.|.|+|++++||.+||++|+.. .| +++++|||+|+||.|+|+++|++|||++|++|+|+++++
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~~~~g---ip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~~i~l~~~~~ 77 (95)
T 1uel_A 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDA---FPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKP 77 (95)
T ss_dssp CEEEEEETTCCEEEEECCTTSBHHHHHHHHHHHHCTTT---CCTTTEEEEETTEECCTTSBGGGGTCCSSSEEEEEESSC
T ss_pred CEEEEEeCCCCEEEEEECCCCHHHHHHHHHHhhcccCC---CChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEeCC
Confidence 899999999999999999999999999999999 67 999999999999999999999999999999999999876
Q ss_pred CCCC
Q 017906 78 KVSS 81 (364)
Q Consensus 78 k~~~ 81 (364)
+..+
T Consensus 78 ~~~~ 81 (95)
T 1uel_A 78 KAVS 81 (95)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 5443
No 7
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=99.77 E-value=1.6e-18 Score=137.77 Aligned_cols=78 Identities=35% Similarity=0.518 Sum_probs=72.7
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCChhhhccCCCCEEEEEEecCCCC
Q 017906 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVS 80 (364)
Q Consensus 1 MkI~VKtl~gk~~~ieV~~s~TV~dLK~kI~~~~g~~~ip~~~qkLif~GkiL~D~~tL~d~gIk~~s~I~v~v~k~k~~ 80 (364)
|+|+||+++|++|.|+|++++||.+||++|+..+| +|+++|||+|+|+.|+|+++|++|+|+++++|+|+++.+...
T Consensus 1 M~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~l~l~~rl~Gg~ 77 (88)
T 4fbj_B 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEG---IPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGGG 77 (88)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHC---CCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECBCC---
T ss_pred CEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHC---cChhHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEECCCCC
Confidence 89999999999999999999999999999999999 999999999999999999999999999999999999987755
Q ss_pred C
Q 017906 81 S 81 (364)
Q Consensus 81 ~ 81 (364)
.
T Consensus 78 ~ 78 (88)
T 4fbj_B 78 G 78 (88)
T ss_dssp -
T ss_pred C
Confidence 4
No 8
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=99.76 E-value=1.4e-18 Score=138.06 Aligned_cols=75 Identities=28% Similarity=0.380 Sum_probs=71.0
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCChhhhccCCCCEEEEEEecCCC
Q 017906 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKV 79 (364)
Q Consensus 1 MkI~VKtl~gk~~~ieV~~s~TV~dLK~kI~~~~g~~~ip~~~qkLif~GkiL~D~~tL~d~gIk~~s~I~v~v~k~k~ 79 (364)
|+|+||+++|++|.|+|++++||.+||++|+.++| +++++|||+|+||.|+|+++|++|+| ++++|||+++.+..
T Consensus 6 m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~g---ip~~~qrLi~~Gk~L~d~~tL~~~~i-~g~~i~l~~~~~~~ 80 (90)
T 4dwf_A 6 LEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVS---IPSEKQRLIYQGRVLQDDKKLQEYNV-GGKVIHLVERAPPQ 80 (90)
T ss_dssp EEEEEEETTCCEEEEEEETTCBHHHHHHHHHHHHT---CCGGGEEEEETTEECCTTSBGGGGTC-TTEEEEEEECCCC-
T ss_pred EEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhC---CCHHHEEEEECCeECCCCCCHHHcCC-CCcEEEEEecCCCC
Confidence 79999999999999999999999999999999999 99999999999999999999999999 89999999886543
No 9
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=99.76 E-value=2e-18 Score=133.81 Aligned_cols=74 Identities=24% Similarity=0.320 Sum_probs=71.9
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCChhhhccCCCCEEEEEEecC
Q 017906 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKS 77 (364)
Q Consensus 1 MkI~VKtl~gk~~~ieV~~s~TV~dLK~kI~~~~g~~~ip~~~qkLif~GkiL~D~~tL~d~gIk~~s~I~v~v~k~ 77 (364)
|+|+||+++|++|.|+|++++||.+||++|+...| +|+++|||+|+|+.|+|+++|++|+|+++++|+|+++.+
T Consensus 5 m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~g---ip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~l~l~~rl~ 78 (79)
T 3phx_B 5 LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEG---VQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLR 78 (79)
T ss_dssp EEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHT---CCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCB
T ss_pred EEEEEEeCCCCEEEEEECCcChHHHHHHHHHhhcC---CCHHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecC
Confidence 78999999999999999999999999999999999 999999999999999999999999999999999999865
No 10
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=99.75 E-value=5.1e-18 Score=132.97 Aligned_cols=76 Identities=36% Similarity=0.640 Sum_probs=69.8
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHH---hCCCCCCCCCeEEEeCCeecCCCCChhhhccCCCCEEEEEEecC
Q 017906 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETV---QGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKS 77 (364)
Q Consensus 1 MkI~VKtl~gk~~~ieV~~s~TV~dLK~kI~~~---~g~~~ip~~~qkLif~GkiL~D~~tL~d~gIk~~s~I~v~v~k~ 77 (364)
|+|+||+++|+.|.++|++++||.+||++|+.. .| +++++|||+|+|+.|+|+++|++|+|+++++|+|+++++
T Consensus 6 m~i~vk~~~g~~~~~~v~~~~TV~~lK~~i~~~~~~~g---ip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~~~~ 82 (85)
T 2wyq_A 6 VTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDA---FPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKT 82 (85)
T ss_dssp EEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHCTTT---CCGGGEEEEETTEECCTTSBGGGGCCCTTSEEEEEEC--
T ss_pred EEEEEEECCCCEEEEEECCCCCHHHHHHHHHhhccccC---CCHHHeEEEECCEECcCCCCHHHcCCCCCCEEEEEEcCC
Confidence 789999999999999999999999999999998 77 999999999999999999999999999999999999876
Q ss_pred CC
Q 017906 78 KV 79 (364)
Q Consensus 78 k~ 79 (364)
++
T Consensus 83 ~~ 84 (85)
T 2wyq_A 83 KA 84 (85)
T ss_dssp --
T ss_pred CC
Confidence 53
No 11
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.75 E-value=3.8e-18 Score=134.86 Aligned_cols=72 Identities=36% Similarity=0.517 Sum_probs=70.2
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCee-cCCCCChhhhccCCCCEEEEEEe
Q 017906 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKV-LKDVTTLEENKVAENSFVVVMLT 75 (364)
Q Consensus 1 MkI~VKtl~gk~~~ieV~~s~TV~dLK~kI~~~~g~~~ip~~~qkLif~Gki-L~D~~tL~d~gIk~~s~I~v~v~ 75 (364)
|+|+||+++|++|.|+|++++||.+||++|+...| +|+++|||+|+||. |+|+++|++|+|+++++|+|+++
T Consensus 11 ~~i~vk~l~g~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~QrLi~~Gk~lL~D~~tL~~y~I~~gs~i~lv~~ 83 (84)
T 2kk8_A 11 MKFLVENLNGSSFELEVDYRDTLLVVKQKIERSQH---IPVSKQTLIVDGIVILREDLTVEQCQIVPTSDIQLEVS 83 (84)
T ss_dssp EEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHT---CCGGGEEEEETTEECCCSSSBHHHHTCCTTSCEEEEEC
T ss_pred eEEEEEecCCcEEEEEECCCChHHHHHHHHHHHHC---cChHHEEEEECCEEecCCcCCHHHcCCCCCCEEEEEEc
Confidence 89999999999999999999999999999999999 99999999999999 99999999999999999999875
No 12
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=99.75 E-value=4.4e-18 Score=135.78 Aligned_cols=74 Identities=39% Similarity=0.646 Sum_probs=71.6
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCChhhhccCCCCEEEEEEecC
Q 017906 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKS 77 (364)
Q Consensus 1 MkI~VKtl~gk~~~ieV~~s~TV~dLK~kI~~~~g~~~ip~~~qkLif~GkiL~D~~tL~d~gIk~~s~I~v~v~k~ 77 (364)
|+|+||+++|++|.|+|++++||.+||++|+..+| +++++|||+|+||.|+|+++|++|||++|++|+|+++.+
T Consensus 18 m~i~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~rlr 91 (91)
T 3v6c_B 18 MQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 91 (91)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHC---CCGGGCEEEETTEECCTTCBTGGGTCCTTCEEEEECCCC
T ss_pred EEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhC---CChhhEEEEECCeECCCcCcHHHCCCCCCCEEEEEEecC
Confidence 79999999999999999999999999999999999 999999999999999999999999999999999998764
No 13
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=99.74 E-value=3.2e-18 Score=139.41 Aligned_cols=74 Identities=27% Similarity=0.459 Sum_probs=69.1
Q ss_pred CEEEEEeCCCcEEEE--EeCCCCcHHHHHHHH-HHHhCCCCCCCCCeEEEeCCeecCCCCChhhhcc-CCCCEEEEEEec
Q 017906 1 MKVFVKTLKGTHFEI--EVKPEDKVSDVKKNI-ETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKV-AENSFVVVMLTK 76 (364)
Q Consensus 1 MkI~VKtl~gk~~~i--eV~~s~TV~dLK~kI-~~~~g~~~ip~~~qkLif~GkiL~D~~tL~d~gI-k~~s~I~v~v~k 76 (364)
|+|+||+++|++|.| +|++++||.+||++| +...| +++++|||||+||+|+|+.+|++|+| ++|++|+||+++
T Consensus 20 m~I~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~g---ip~~~QrLi~~Gk~L~D~~tL~dy~I~~~g~ti~lmvsk 96 (98)
T 4a20_A 20 VHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKA---SHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIKP 96 (98)
T ss_dssp EEEEEEECSSSCEEEEEEECTTCBHHHHHHHHHHTTSC---SCGGGEEEEETTEEECTTCBGGGSCCBTTBCEEEEEECC
T ss_pred EEEEEEcCCCCEEEEEEecCCCChHHHHHHHHHHHhcC---CChhhEEEEECCEECcCcCCHHHcCcCCCCCEEEEEEeC
Confidence 789999999998777 566999999999999 77778 99999999999999999999999999 999999999987
Q ss_pred C
Q 017906 77 S 77 (364)
Q Consensus 77 ~ 77 (364)
+
T Consensus 97 p 97 (98)
T 4a20_A 97 N 97 (98)
T ss_dssp C
T ss_pred C
Confidence 5
No 14
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=99.74 E-value=6e-18 Score=136.00 Aligned_cols=71 Identities=27% Similarity=0.379 Sum_probs=69.0
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCChhhhccCCCCEEEEEE
Q 017906 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVML 74 (364)
Q Consensus 1 MkI~VKtl~gk~~~ieV~~s~TV~dLK~kI~~~~g~~~ip~~~qkLif~GkiL~D~~tL~d~gIk~~s~I~v~v 74 (364)
|+|+||++.|+++.|+|++++||.+||++|+++.| +|+++|||+|+||+|+|+.+|++|+|++|++|++..
T Consensus 22 IqI~Vk~~~Gkk~~v~v~p~DTI~~LK~~I~~k~G---ip~~qQrLif~Gk~LkD~~TL~dY~I~dgstLhL~~ 92 (93)
T 3plu_A 22 IEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIG---TQPNKIVLQKGGSVLKDHISLEDYEVHDQTNLELYY 92 (93)
T ss_dssp EEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHHT---CCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEE
T ss_pred EEEEEECCCCCEEEEEECCcCHHHHHHHHHHHHhC---CCHHHEEEEeCCEEccCcCCHHHcCCCCCCEEEEEe
Confidence 68999999999999999999999999999999999 999999999999999999999999999999999874
No 15
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=99.74 E-value=3e-18 Score=136.68 Aligned_cols=74 Identities=28% Similarity=0.455 Sum_probs=69.3
Q ss_pred CEEEEEeCCCcEEEEEeC--CCCcHHHHHHHH-HHHhCCCCCCCCCeEEEeCCeecCCCCChhhhcc-CCCCEEEEEEec
Q 017906 1 MKVFVKTLKGTHFEIEVK--PEDKVSDVKKNI-ETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKV-AENSFVVVMLTK 76 (364)
Q Consensus 1 MkI~VKtl~gk~~~ieV~--~s~TV~dLK~kI-~~~~g~~~ip~~~qkLif~GkiL~D~~tL~d~gI-k~~s~I~v~v~k 76 (364)
|+|+||+++|++|.|+|+ +++||.+||++| +...| +|+++|||||+||+|+|+.+|++|+| .++++|+|++++
T Consensus 2 mqI~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~g---ip~~~QrLi~~Gk~L~D~~tL~~y~I~~~~stl~v~~~~ 78 (87)
T 2lxa_A 2 VHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKA---SHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIKP 78 (87)
T ss_dssp CEEEEEECSSSCEECCEECCTTCBHHHHHHHHHHTTSC---SSSTTEEEEETTEECCTTCBHHHHCCCGGGCEEEEEECC
T ss_pred EEEEEEcCCCCEEEEEEcCCCCCcHHHHHHHHHHHhcC---CChHHEEEEECCEECcCcCCHHHcCCCCCCCEEEEEcCC
Confidence 899999999999988765 999999999999 99989 99999999999999999999999999 699999999875
Q ss_pred C
Q 017906 77 S 77 (364)
Q Consensus 77 ~ 77 (364)
.
T Consensus 79 ~ 79 (87)
T 2lxa_A 79 N 79 (87)
T ss_dssp C
T ss_pred C
Confidence 3
No 16
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=99.74 E-value=1.1e-17 Score=134.23 Aligned_cols=77 Identities=36% Similarity=0.589 Sum_probs=73.0
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCChhhhccCCCCEEEEEEecCCCC
Q 017906 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVS 80 (364)
Q Consensus 1 MkI~VKtl~gk~~~ieV~~s~TV~dLK~kI~~~~g~~~ip~~~qkLif~GkiL~D~~tL~d~gIk~~s~I~v~v~k~k~~ 80 (364)
|+|+||+++|+.|.|+|++++||.+||++|+..+| +++++|||+|+|+.|+|+++|++|+|+++++|+|+++.+...
T Consensus 2 m~i~vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~g---ip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~r~~gG~ 78 (96)
T 3k9o_B 2 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGYA 78 (96)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHC---CCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCC--
T ss_pred cEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhC---CChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEEcCCCC
Confidence 89999999999999999999999999999999999 999999999999999999999999999999999999877643
No 17
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.73 E-value=1.9e-17 Score=135.98 Aligned_cols=76 Identities=26% Similarity=0.324 Sum_probs=71.0
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCChhhhccCCCCEEEEEEecCCCC
Q 017906 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVS 80 (364)
Q Consensus 1 MkI~VKtl~gk~~~ieV~~s~TV~dLK~kI~~~~g~~~ip~~~qkLif~GkiL~D~~tL~d~gIk~~s~I~v~v~k~k~~ 80 (364)
|+|+||+.+|+ |.|+|++++||.+||++|+..+| +++++|||+|+||.|+|+++|++|+|+++++|||+++++...
T Consensus 18 m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~g---ip~~~qrLi~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~~~~ 93 (106)
T 1wx7_A 18 IKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFK---AHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQHRA 93 (106)
T ss_dssp EEEEEECSSCE-EEEEEETTCCHHHHHHHHHHHHT---CCTTTEEEEETTEECCTTSCHHHHTCCTTEEEEEEECCCCCS
T ss_pred EEEEEEeCCCc-EEEEECCCCcHHHHHHHHHHHHC---cChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcCCCCC
Confidence 78999998885 89999999999999999999999 999999999999999999999999999999999999876543
No 18
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=99.73 E-value=1.3e-17 Score=135.07 Aligned_cols=75 Identities=36% Similarity=0.577 Sum_probs=72.5
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCChhhhccCCCCEEEEEEecCC
Q 017906 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSK 78 (364)
Q Consensus 1 MkI~VKtl~gk~~~ieV~~s~TV~dLK~kI~~~~g~~~ip~~~qkLif~GkiL~D~~tL~d~gIk~~s~I~v~v~k~k 78 (364)
|+|+||+++|++|.|+|++++||.+||++|+.++| +|+++|||+|+||.|+|+++|++|+|+++++|+|+++.+.
T Consensus 23 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~rl~G 97 (98)
T 4hcn_B 23 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 97 (98)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHC---CCGGGCEEEETTEECCTTCBSGGGTCCTTEEEEEECBCSC
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhC---CChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCC
Confidence 89999999999999999999999999999999999 9999999999999999999999999999999999998764
No 19
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=99.73 E-value=2.1e-17 Score=125.95 Aligned_cols=74 Identities=36% Similarity=0.562 Sum_probs=71.7
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCChhhhccCCCCEEEEEEecC
Q 017906 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKS 77 (364)
Q Consensus 1 MkI~VKtl~gk~~~ieV~~s~TV~dLK~kI~~~~g~~~ip~~~qkLif~GkiL~D~~tL~d~gIk~~s~I~v~v~k~ 77 (364)
|+|+||+.+|+.+.++|++++||.+||++|+...| ++++.|+|+|+|+.|+|+.+|++|+|+++++|+|+++.+
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~~---i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~ 74 (76)
T 1ndd_A 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEG---IPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALR 74 (76)
T ss_dssp CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHC---CCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCC
T ss_pred CEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHC---cChHHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCC
Confidence 89999999999999999999999999999999999 999999999999999999999999999999999998765
No 20
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=99.73 E-value=9.9e-18 Score=131.99 Aligned_cols=75 Identities=36% Similarity=0.546 Sum_probs=72.2
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCChhhhccCCCCEEEEEEecCC
Q 017906 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSK 78 (364)
Q Consensus 1 MkI~VKtl~gk~~~ieV~~s~TV~dLK~kI~~~~g~~~ip~~~qkLif~GkiL~D~~tL~d~gIk~~s~I~v~v~k~k 78 (364)
|+|+||+++|++|.|+|++++||.+||++|+..+| +|+++|+|+|+|+.|+|+++|++|+|+++++|+|+++.+.
T Consensus 13 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~g---ip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~rl~G 87 (88)
T 3dbh_I 13 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEG---IPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLRLRG 87 (88)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHC---CCGGGCCEEETTEECCTTSBGGGGTCCTTCEEEECCCCCC
T ss_pred EEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHC---cCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEeCCC
Confidence 78999999999999999999999999999999999 9999999999999999999999999999999999988653
No 21
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.72 E-value=1.9e-17 Score=127.77 Aligned_cols=73 Identities=22% Similarity=0.349 Sum_probs=70.1
Q ss_pred CEEEEEeCCCcEE-EEE-eCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCChhhhccCCCCEEEEEEec
Q 017906 1 MKVFVKTLKGTHF-EIE-VKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTK 76 (364)
Q Consensus 1 MkI~VKtl~gk~~-~ie-V~~s~TV~dLK~kI~~~~g~~~ip~~~qkLif~GkiL~D~~tL~d~gIk~~s~I~v~v~k 76 (364)
|+|+||+++|+.+ .|+ |++++||.+||++|+...| +|+++|+|+|+|+.|+|+++|++|||+++++|+|+++.
T Consensus 3 m~i~Vk~~~g~~~~~l~~v~~~~tv~~lK~~i~~~~g---ip~~~qrL~~~g~~L~d~~tL~~~~i~~g~~i~l~~r~ 77 (78)
T 2faz_A 3 MWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFH---VEPGLQRLFYRGKQMEDGHTLFDYEVRLNDTIQLLVRQ 77 (78)
T ss_dssp EEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHHHC---CCGGGEEEEETTEECCTTCBTTTTTCCTTCEEEEEECC
T ss_pred EEEEEEECCCCEEEEEeccCCCCCHHHHHHHHHHHHC---cChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeC
Confidence 8999999999985 999 9999999999999999999 99999999999999999999999999999999999875
No 22
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.72 E-value=8.3e-18 Score=137.29 Aligned_cols=71 Identities=17% Similarity=0.281 Sum_probs=68.8
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCChhhhccCCCCEEEEEE
Q 017906 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVML 74 (364)
Q Consensus 1 MkI~VKtl~gk~~~ieV~~s~TV~dLK~kI~~~~g~~~ip~~~qkLif~GkiL~D~~tL~d~gIk~~s~I~v~v 74 (364)
|+|+||+++|+++.|+|++++||.+||++|+++.| +++++|||+|.||+|+|+.+|++|+|+++++|+|..
T Consensus 29 m~I~VKtl~Gk~i~lev~p~dTV~~lK~~Ia~k~G---ip~~qQrLi~~Gk~L~D~~TL~dygI~~gstlhL~~ 99 (100)
T 1uh6_A 29 IEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTG---TRWNKIVLKKWYTIFKDHVSLGDYEIHDGMNLELYY 99 (100)
T ss_dssp EEEEEECSSSSCEEEEEETTSBHHHHHHHHHHHHC---CCGGGCEEEETTEECCSSCBHHHHTCCTTEEEEEEC
T ss_pred EEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhC---CCHHHEEEEECCEECCCCCCHHHcCCCCCCEEEEEe
Confidence 78999999999999999999999999999999999 999999999999999999999999999999999864
No 23
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=99.72 E-value=3.7e-17 Score=124.59 Aligned_cols=75 Identities=37% Similarity=0.601 Sum_probs=72.0
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCChhhhccCCCCEEEEEEecCC
Q 017906 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSK 78 (364)
Q Consensus 1 MkI~VKtl~gk~~~ieV~~s~TV~dLK~kI~~~~g~~~ip~~~qkLif~GkiL~D~~tL~d~gIk~~s~I~v~v~k~k 78 (364)
|+|+||+.+|+.+.++|++++||.+||++|+...| +++++|+|+|+|+.|+|+.+|++|+|+++++|+|+++.+.
T Consensus 1 M~i~vk~~~g~~~~i~v~~~~tv~~lK~~i~~~~~---i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~G 75 (76)
T 3a9j_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQRESTLHLVLRLRG 75 (76)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHC---CCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEECCCC
T ss_pred CEEEEEcCCCCEEEEEECCCCcHHHHHHHHHHHHC---cCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEEeCCC
Confidence 89999999999999999999999999999999999 9999999999999999999999999999999999987653
No 24
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.71 E-value=2e-17 Score=129.28 Aligned_cols=76 Identities=36% Similarity=0.546 Sum_probs=72.2
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCChhhhccCCCCEEEEEEecCCC
Q 017906 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKV 79 (364)
Q Consensus 1 MkI~VKtl~gk~~~ieV~~s~TV~dLK~kI~~~~g~~~ip~~~qkLif~GkiL~D~~tL~d~gIk~~s~I~v~v~k~k~ 79 (364)
|+|+||+++|+++.|+|++++||.+||++|++.++ +|+++|+|+|+|+.|+|+++|++|+|+++++|+|+++.+..
T Consensus 4 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~---ip~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl~GG 79 (85)
T 3n3k_B 4 MRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIHNHSALYLLLKLRGG 79 (85)
T ss_dssp CEEEEECGGGCEEEEECCTTCBHHHHHHHHHHHHC---CCGGGEEEEETBEECCTTCBTTTTTCCTTCEEEEEECCC--
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHC---CCHHHEEEEECCeECCCCCCHHHCCCCCCCEEEEEEeccCC
Confidence 89999999999999999999999999999999999 99999999999999999999999999999999999987653
No 25
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.71 E-value=1.8e-17 Score=136.31 Aligned_cols=76 Identities=20% Similarity=0.364 Sum_probs=72.9
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCChhhhccCCCCEEEEEEecCCC
Q 017906 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKV 79 (364)
Q Consensus 1 MkI~VKtl~gk~~~ieV~~s~TV~dLK~kI~~~~g~~~ip~~~qkLif~GkiL~D~~tL~d~gIk~~s~I~v~v~k~k~ 79 (364)
|+|+||+++|++|.|+|++++||.+||.+|+...| +++++|||+|+||.|+|+++|++|||++|++|||+++++..
T Consensus 24 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~ti~lv~~~~~~ 99 (106)
T 1ttn_A 24 CQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEG---VEPGSQRWFFSGRPLTDKMKFEELKIPKDYVVQVIVSQPVQ 99 (106)
T ss_dssp EEEEEEETTTEEEEEEECTTSHHHHHHHHHHHTTC---CCSTTCEEEETTEECCTTSHHHHCCCSSSCEEEEECCCSSC
T ss_pred EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHHC---cCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 78999999999999999999999999999999999 99999999999999999999999999999999999987654
No 26
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=2.8e-17 Score=127.29 Aligned_cols=73 Identities=27% Similarity=0.424 Sum_probs=70.5
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCChhhhccCCCCEEEEEEec
Q 017906 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTK 76 (364)
Q Consensus 1 MkI~VKtl~gk~~~ieV~~s~TV~dLK~kI~~~~g~~~ip~~~qkLif~GkiL~D~~tL~d~gIk~~s~I~v~v~k 76 (364)
|+|+||+++|+.+.++|++++||.+||++|+...| +++++|||+|+||.|+|+++|++|||++|++|+|+++.
T Consensus 8 m~i~vk~~~g~~~~~~v~~~~tV~~LK~~i~~~~~---i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~ 80 (81)
T 2dzi_A 8 MQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLN---VPVRQQRLLFKGKALADGKRLSDYSIGPNSKLNLVVKP 80 (81)
T ss_dssp EEEEEEETTSCEEEEEECSSCBHHHHHHHHHHHTC---CCTTTCEEEETTEECCTTSBGGGGTCCSSBCCEEECCC
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHC---cCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEeC
Confidence 78999999999999999999999999999999999 99999999999999999999999999999999999865
No 27
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.71 E-value=5.4e-17 Score=128.41 Aligned_cols=76 Identities=20% Similarity=0.295 Sum_probs=72.1
Q ss_pred CEEEEEeCCC-cEEEE-EeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCChhhhccCCCCEEEEEEecCC
Q 017906 1 MKVFVKTLKG-THFEI-EVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSK 78 (364)
Q Consensus 1 MkI~VKtl~g-k~~~i-eV~~s~TV~dLK~kI~~~~g~~~ip~~~qkLif~GkiL~D~~tL~d~gIk~~s~I~v~v~k~k 78 (364)
|+|+||+++| ++|.| +|++++||.+||++|+...| +++++|+|+|+|+.|+|+++|++|+|+++++|+|+++.+.
T Consensus 8 m~i~Vk~~~g~~~~~l~~v~~~~tV~~lK~~i~~~~g---ip~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~~g 84 (89)
T 1wy8_A 8 MWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFD---VRPECQRLFYRGKQLENGYTLFDYDVGLNDIIQLLVRPDS 84 (89)
T ss_dssp EEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHHSC---CCTTTEEEEETTEECCSSSBHHHHTCCTTCEEEEEECCCC
T ss_pred EEEEEEECCCCceEEEEecCCCCCHHHHHHHHHHHHC---cChhhEEEEECCeECCCCCCHHHCCCCCCCEEEEEEeCCC
Confidence 7999999999 69999 59999999999999999999 9999999999999999999999999999999999998765
Q ss_pred C
Q 017906 79 V 79 (364)
Q Consensus 79 ~ 79 (364)
.
T Consensus 85 G 85 (89)
T 1wy8_A 85 G 85 (89)
T ss_dssp S
T ss_pred C
Confidence 4
No 28
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=99.71 E-value=2.2e-17 Score=127.81 Aligned_cols=75 Identities=19% Similarity=0.268 Sum_probs=72.0
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCChhhhccCCCCEEEEEEecCC
Q 017906 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSK 78 (364)
Q Consensus 1 MkI~VKtl~gk~~~ieV~~s~TV~dLK~kI~~~~g~~~ip~~~qkLif~GkiL~D~~tL~d~gIk~~s~I~v~v~k~k 78 (364)
|+|+||+++|+++.|+|++++||.+||++|+++.| +++++|+|+|+|+.|+|+++|++|+|+++++|+|+++.+.
T Consensus 4 m~i~vk~~~g~~~~~~v~~~~tv~~lk~~i~~~~g---i~~~~qrL~~~G~~L~d~~tl~~~~i~~~~~i~l~~~~~G 78 (79)
T 2uyz_B 4 IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQG---VPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTG 78 (79)
T ss_dssp EEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHT---CCGGGEEEEETTEECCTTCCHHHHTCCTTEEEEEEECCCC
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHC---CCcccEEEEECCEEeCCCCCHHHcCCCCCCEEEEEEeccC
Confidence 78999999999999999999999999999999999 9999999999999999999999999999999999997653
No 29
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=99.71 E-value=3.4e-17 Score=127.78 Aligned_cols=76 Identities=37% Similarity=0.577 Sum_probs=73.0
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCChhhhccCCCCEEEEEEecCCC
Q 017906 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKV 79 (364)
Q Consensus 1 MkI~VKtl~gk~~~ieV~~s~TV~dLK~kI~~~~g~~~ip~~~qkLif~GkiL~D~~tL~d~gIk~~s~I~v~v~k~k~ 79 (364)
|+|+||+++|++|.|+|++++||.+||++|++.++ +|+++|+|+|+|+.|+|+++|++|+|+++++|+|+++.+..
T Consensus 4 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~---i~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~r~~GG 79 (85)
T 3mtn_B 4 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKWSTLFLLLRLRGG 79 (85)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHC---CCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEECCCCCC
T ss_pred EEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHC---cChHHEEEEECCEECCCCCCHHHcCCCCCCEEEEEEECcCC
Confidence 79999999999999999999999999999999999 99999999999999999999999999999999999987653
No 30
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=99.71 E-value=2.3e-17 Score=130.97 Aligned_cols=75 Identities=24% Similarity=0.310 Sum_probs=70.4
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCChhhhccCCCCEEEEEEecCC
Q 017906 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSK 78 (364)
Q Consensus 1 MkI~VKtl~gk~~~ieV~~s~TV~dLK~kI~~~~g~~~ip~~~qkLif~GkiL~D~~tL~d~gIk~~s~I~v~v~k~k 78 (364)
|+|+||+++|+.+.|+|++++||.+||++|+...| +|+++|||+|+|+.|+|+++|++|+|+++++|+|+++.+.
T Consensus 5 m~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~g---ip~~~qrL~~~Gk~L~D~~tL~~~~I~~g~~i~l~~~~~g 79 (88)
T 2hj8_A 5 LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEG---VQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRG 79 (88)
T ss_dssp EEEEEEETTSCEEEEEEESSSBHHHHHHHHHHHTC---SCTTTEEEESSSSCCCTTSBHHHHHCSTTCEEEEEEC---
T ss_pred EEEEEECCCCCEEEEEECCCCcHHHHHHHHHHHhC---CChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEEcCC
Confidence 78999999999999999999999999999999999 9999999999999999999999999999999999988654
No 31
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=99.71 E-value=2.8e-17 Score=129.93 Aligned_cols=71 Identities=30% Similarity=0.411 Sum_probs=68.6
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCChhhhccCCCCEEEEEEe
Q 017906 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLT 75 (364)
Q Consensus 1 MkI~VKtl~gk~~~ieV~~s~TV~dLK~kI~~~~g~~~ip~~~qkLif~GkiL~D~~tL~d~gIk~~s~I~v~v~ 75 (364)
|+|+||+++|++|.|+|++++||.+||++|+.++| +|+++|||+|+||.|+|+.+|++||| +|++||+++|
T Consensus 18 m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~g---ip~~~qrLi~~Gk~L~D~~tL~~~~i-~g~~i~lv~R 88 (88)
T 4eew_A 18 LEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVS---IPSEKQRLIYQGRVLQDDKKLQEYNV-GGKVIHLVER 88 (88)
T ss_dssp EEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHHT---CCGGGEEEEETTEECCTTSBGGGGTC-TTEEEEEEEC
T ss_pred EEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhC---CCHHHEEEEECCEECCCCCcHHHcCC-CCcEEEEEEC
Confidence 78999999999999999999999999999999999 99999999999999999999999999 8999999875
No 32
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.71 E-value=4.5e-17 Score=128.22 Aligned_cols=75 Identities=29% Similarity=0.467 Sum_probs=72.4
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCChhhhccCCCCEEEEEEecCC
Q 017906 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSK 78 (364)
Q Consensus 1 MkI~VKtl~gk~~~ieV~~s~TV~dLK~kI~~~~g~~~ip~~~qkLif~GkiL~D~~tL~d~gIk~~s~I~v~v~k~k 78 (364)
|+|+||+++|+++.++|++++||.+||++|++..+ +++++|+|+|+|+.|+|+++|++|+|+++++|+|+++.+.
T Consensus 8 m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~g---i~~~~qrL~~~Gk~L~d~~tL~~~~i~~g~~i~l~~~~~G 82 (87)
T 1wh3_A 8 IQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQG---LPKKQQQLEFQGQVLQDWLGLGIYGIQDSDTLILSKKKGS 82 (87)
T ss_dssp EEEEEEETTTEEEEEEECSSSBHHHHHHHHHHHTC---CCTTTEEEEETTEECCSSSBHHHHTCCTTEEEEEEECSCC
T ss_pred EEEEEEcCCCCEEEEEeCCCChHHHHHHHHHHHhC---CChHHEEEEECCEEccCCCCHHHCCCCCCCEEEEEEeccC
Confidence 78999999999999999999999999999999999 9999999999999999999999999999999999998765
No 33
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.70 E-value=5e-17 Score=130.23 Aligned_cols=76 Identities=20% Similarity=0.215 Sum_probs=70.7
Q ss_pred CEEEEEeCCCc--EEEEEeCCCCcHHHHHHHHHHHh--CCCCCCCCCeEEEeCCeecCCCCChhhh--ccCCCCEEEEEE
Q 017906 1 MKVFVKTLKGT--HFEIEVKPEDKVSDVKKNIETVQ--GSDVYPASQQMLIHQGKVLKDVTTLEEN--KVAENSFVVVML 74 (364)
Q Consensus 1 MkI~VKtl~gk--~~~ieV~~s~TV~dLK~kI~~~~--g~~~ip~~~qkLif~GkiL~D~~tL~d~--gIk~~s~I~v~v 74 (364)
|+|+||+.+|+ .+.|+|++++||.+||++|+..+ + +++++|||||+||+|+|+++|++| +|+++++|||++
T Consensus 8 m~i~Vk~~~~~~~~~~v~v~~~~TV~~lK~~I~~~~~~~---i~~~~QrLi~~Gk~L~D~~tL~~~~~~i~~~~~i~lv~ 84 (93)
T 1wgd_A 8 VTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPER---PRPEDQRLIYSGKLLLDHQCLRDLLPKQEKRHVLHLVC 84 (93)
T ss_dssp CEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHHSTTC---CCTTTCEEEETTEECCSSSCHHHHSCSSSCSEEEEEEC
T ss_pred EEEEEEeCCCCeEEEEEecCCCCcHHHHHHHHHHHhcCC---CChHHeEEEECCEECcCcCCHHHHhcCCCCCCEEEEEe
Confidence 79999999998 67788889999999999999998 8 999999999999999999999999 999999999998
Q ss_pred ecCCC
Q 017906 75 TKSKV 79 (364)
Q Consensus 75 ~k~k~ 79 (364)
+.+..
T Consensus 85 ~~~gg 89 (93)
T 1wgd_A 85 NVKSG 89 (93)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 77654
No 34
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=99.70 E-value=4.7e-17 Score=129.27 Aligned_cols=75 Identities=33% Similarity=0.604 Sum_probs=69.9
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCChhhhccCCCCEEEEEEecCC
Q 017906 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSK 78 (364)
Q Consensus 1 MkI~VKtl~gk~~~ieV~~s~TV~dLK~kI~~~~g~~~ip~~~qkLif~GkiL~D~~tL~d~gIk~~s~I~v~v~k~k 78 (364)
|+|+||+++|+++.++|++++||.+||++|++..| +|+++|||+|+||.|+|+++|++|+|+++++|+|+++.+.
T Consensus 10 ~~i~v~~~~G~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~r~~G 84 (88)
T 1sif_A 10 LQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 84 (88)
T ss_dssp CEEEEEETTSCEEEEECCTTSBHHHHHHHHHHHHC---CCGGGCEEEETTEECCTTSBSGGGTCCTTCEEEEEC----
T ss_pred eEEEEEeCCCCEEEEEECCCChHHHHHHHHHHHHC---cChhhEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCC
Confidence 89999999999999999999999999999999999 9999999999999999999999999999999999988654
No 35
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.70 E-value=2e-17 Score=136.31 Aligned_cols=77 Identities=22% Similarity=0.234 Sum_probs=70.8
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCC---------------CCeEEEeCCeecC-CCCChhhhcc
Q 017906 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPA---------------SQQMLIHQGKVLK-DVTTLEENKV 64 (364)
Q Consensus 1 MkI~VKtl~gk~~~ieV~~s~TV~dLK~kI~~~~g~~~ip~---------------~~qkLif~GkiL~-D~~tL~d~gI 64 (364)
|+|+||+++|++|.|+|++++||.+||++|+++.+ +++ +.|+|||+||+|. |+++|++|||
T Consensus 8 M~I~Vk~l~g~~~~v~V~~~~TV~dLK~~I~~~~~---i~~~~q~g~~~isw~~~w~q~~Li~~Gk~L~dD~~tL~dygI 84 (105)
T 1v2y_A 8 MTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQ---LKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRDYGI 84 (105)
T ss_dssp EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHH---HHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBHHHHTC
T ss_pred EEEEEEecCCCEEEEEECCCChHHHHHHHHHHHhC---CCcccccCcceeeeeecceeEEEEeCCcCccCCcCCHHHcCC
Confidence 89999999999999999999999999999999998 766 4679999999996 6799999999
Q ss_pred CCCCEEEEEEecCCCC
Q 017906 65 AENSFVVVMLTKSKVS 80 (364)
Q Consensus 65 k~~s~I~v~v~k~k~~ 80 (364)
+++++|||+.+.+...
T Consensus 85 ~~g~~l~lv~~lr~~~ 100 (105)
T 1v2y_A 85 RNRDEVSFIKKLGQKS 100 (105)
T ss_dssp CSSEEEEEEECSCSCC
T ss_pred CCCCEEEEEehhccCC
Confidence 9999999999887653
No 36
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.70 E-value=5.9e-17 Score=130.21 Aligned_cols=74 Identities=28% Similarity=0.320 Sum_probs=68.5
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCC-CChhhhccCCCCEEEEEEecCCC
Q 017906 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDV-TTLEENKVAENSFVVVMLTKSKV 79 (364)
Q Consensus 1 MkI~VKtl~gk~~~ieV~~s~TV~dLK~kI~~~~g~~~ip~~~qkLif~GkiL~D~-~tL~d~gIk~~s~I~v~v~k~k~ 79 (364)
|+|+||+++|+.|.|+|++++||.+||++|+... +++|||+|+||.|+|+ ++|++|+|+++++|||++++++.
T Consensus 8 m~i~Vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~------~~~qrLi~~Gk~L~D~~~tL~~y~i~~g~~i~l~~~~~~~ 81 (95)
T 1wia_A 8 INVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQ------ESQMKLIYQGRLLQDPARTLSSLNITNNCVIHCHRSPPGA 81 (95)
T ss_dssp EEEEEEETTTEEEEEEECSSSBHHHHHHHHSSST------TTTCEEEETTEECCCSSCBTTTTTCCTTEEEEEECCCCCC
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHhhC------cCcEEEEECCEEccCCcCCHHHcCCCCCCEEEEEECCCCC
Confidence 7899999999999999999999999999998873 7899999999999999 99999999999999999887654
Q ss_pred C
Q 017906 80 S 80 (364)
Q Consensus 80 ~ 80 (364)
.
T Consensus 82 ~ 82 (95)
T 1wia_A 82 A 82 (95)
T ss_dssp C
T ss_pred C
Confidence 3
No 37
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=99.69 E-value=4.5e-17 Score=131.82 Aligned_cols=75 Identities=19% Similarity=0.268 Sum_probs=72.2
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCChhhhccCCCCEEEEEEecCC
Q 017906 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSK 78 (364)
Q Consensus 1 MkI~VKtl~gk~~~ieV~~s~TV~dLK~kI~~~~g~~~ip~~~qkLif~GkiL~D~~tL~d~gIk~~s~I~v~v~k~k 78 (364)
|+|+||+++|+++.|+|++++||.+||++|+.+.| +++++|||+|+|+.|+|+++|++|+|+++++|+|+++.+.
T Consensus 22 m~I~Vk~~~g~~~~l~v~~~~tv~~lK~~i~~~~g---ip~~~qrLif~Gk~L~d~~tl~dy~i~~g~~I~l~~~~~G 96 (97)
T 1wyw_B 22 IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQG---VPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTG 96 (97)
T ss_dssp EEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHT---CCGGGEEEEETTEECCTTCCHHHHTCCTTCEEEEEESSSC
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHC---CChhhEEEEECCeEcCCCCCHHHCCCCCCCEEEEEEecCC
Confidence 78999999999999999999999999999999999 9999999999999999999999999999999999998753
No 38
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.69 E-value=8.8e-17 Score=129.62 Aligned_cols=75 Identities=31% Similarity=0.370 Sum_probs=71.2
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCC-CChhhhccCCCCEEEEEEecCCC
Q 017906 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDV-TTLEENKVAENSFVVVMLTKSKV 79 (364)
Q Consensus 1 MkI~VKtl~gk~~~ieV~~s~TV~dLK~kI~~~~g~~~ip~~~qkLif~GkiL~D~-~tL~d~gIk~~s~I~v~v~k~k~ 79 (364)
|+|+||+++| ++.|+|++++||.+||++|+...| +|+++|||+|+||.|+|+ ++|++|+|+++++|+|+++.+..
T Consensus 16 ~~I~Vk~~~~-~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~QrLi~~Gk~L~D~~~tL~~ygI~~gstl~lv~r~~gg 91 (94)
T 2kan_A 16 IHVTVKFPSK-QFTVEVDRTETVSSLKDKIHIVEN---TPIKRMQLYYSGIELADDYRNLNEYGITEFSEIVVFLKSINR 91 (94)
T ss_dssp EEEEEECSSC-EEEEEECTTCBHHHHHHHHHHHSS---SCTTTEEEEETTEEECCTTSBHHHHTCCTTEEEEEEECCCSS
T ss_pred EEEEEEcCCc-EEEEEECCCCcHHHHHHHHHHHHC---cCHHHEEEEECCEECCCCcccHHHCCCCCCCEEEEEEeCCCC
Confidence 6899999888 899999999999999999999999 999999999999999999 99999999999999999987654
No 39
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=99.69 E-value=2.3e-17 Score=117.81 Aligned_cols=49 Identities=57% Similarity=1.000 Sum_probs=47.2
Q ss_pred cccCCcchHHHHHHHHHcCCCCCCHHHHHHHHHHHcCChHHHHHHHHhCCCC
Q 017906 165 NLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE 216 (364)
Q Consensus 165 ~l~~g~~~e~~V~~i~~MG~~~f~r~qv~~ALrAafnNpdRAvEyL~~GIP~ 216 (364)
+|++|+.+++.|++|++|| |+|++|++|||+++||++||||||++|||+
T Consensus 1 ~~~~~~~~~~~i~~L~~MG---F~~~~a~~AL~~~~~n~e~A~e~L~~gip~ 49 (49)
T 1ify_A 1 TLVTGSEYETMLTEIMSMG---YERERVVAALRASYNNPHRAVEYLLTGIPG 49 (49)
T ss_dssp CCCCSHHHHHHHHHHHHTT---CCHHHHHHHHHTTTSCSHHHHHHHHHCCCC
T ss_pred CCCCCccCHHHHHHHHHcC---CCHHHHHHHHHHhCCCHHHHHHHHHhCCCC
Confidence 4789999999999999999 999999999999999999999999999995
No 40
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=99.69 E-value=1.3e-16 Score=122.42 Aligned_cols=71 Identities=30% Similarity=0.517 Sum_probs=68.1
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCChhhhccCCCCEEEEEEe
Q 017906 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLT 75 (364)
Q Consensus 1 MkI~VKtl~gk~~~ieV~~s~TV~dLK~kI~~~~g~~~ip~~~qkLif~GkiL~D~~tL~d~gIk~~s~I~v~v~ 75 (364)
|+|+||+ +|+.+.++|++++||.+||++|+...| +++++|+|+|+|+.|+|+++|++|||++|++|+|+.+
T Consensus 5 m~i~vk~-~g~~~~~~v~~~~tV~~LK~~i~~~~~---i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~ 75 (77)
T 2bwf_A 5 LNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANG---IPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKS 75 (77)
T ss_dssp EEEEEEE-TTEEEEEEECTTCBHHHHHHHHHHHHC---CCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEEC
T ss_pred EEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHhC---CCHHHEEEEECCeEcCCCCCHHHcCCCCCCEEEEEEc
Confidence 6899999 999999999999999999999999999 9999999999999999999999999999999999864
No 41
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.68 E-value=1.1e-16 Score=130.75 Aligned_cols=76 Identities=20% Similarity=0.334 Sum_probs=69.9
Q ss_pred CEEEEEeCCC----cEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCC-CChhhhccCCCCEEEEEEe
Q 017906 1 MKVFVKTLKG----THFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDV-TTLEENKVAENSFVVVMLT 75 (364)
Q Consensus 1 MkI~VKtl~g----k~~~ieV~~s~TV~dLK~kI~~~~g~~~ip~~~qkLif~GkiL~D~-~tL~d~gIk~~s~I~v~v~ 75 (364)
|+|+||+.++ ++|.|+|++++||.+||++|+.++| +++++|||+|+||.|+|+ ++|++|+|+++++|+|+++
T Consensus 8 m~I~Vk~~~~~~~~~~~~i~v~~~~TV~~LK~~I~~~~g---ip~~~qrL~~~gk~L~D~~~tL~~ygI~~g~~l~l~~~ 84 (102)
T 1v5o_A 8 MLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESG---VPAEEAQIVYMEQLLTDDHCSLGSYGLKDGDMVVLLQK 84 (102)
T ss_dssp EEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTC---CCGGGBCEEETTEEECCSSSBHHHHTCCTTEEEEECBC
T ss_pred EEEEEEECCCCcCceEEEEEcCCCCCHHHHHHHHHHHHC---cChHHeEEEECCEECCCCcccHHHCCCCCCCEEEEEEC
Confidence 7899999754 7999999999999999999999999 999999999999999887 7999999999999999987
Q ss_pred cCCC
Q 017906 76 KSKV 79 (364)
Q Consensus 76 k~k~ 79 (364)
.+..
T Consensus 85 ~~gg 88 (102)
T 1v5o_A 85 DNVG 88 (102)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 6544
No 42
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=99.68 E-value=1.2e-16 Score=132.52 Aligned_cols=75 Identities=37% Similarity=0.605 Sum_probs=72.3
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCChhhhccCCCCEEEEEEecCC
Q 017906 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSK 78 (364)
Q Consensus 1 MkI~VKtl~gk~~~ieV~~s~TV~dLK~kI~~~~g~~~ip~~~qkLif~GkiL~D~~tL~d~gIk~~s~I~v~v~k~k 78 (364)
|+|+||+++|+.|.|+|++++||.+||.+|+.++| +|+++|||+|+||.|+|+++|++|+|+++++|+|+++.+.
T Consensus 36 m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~QrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~rl~G 110 (111)
T 3vdz_A 36 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 110 (111)
T ss_dssp EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHC---CCGGGEEEEETTEECCTTSBTTTTTCCTTCEEEEEECCCC
T ss_pred EEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhC---CChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCC
Confidence 78999999999999999999999999999999999 9999999999999999999999999999999999998753
No 43
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=99.68 E-value=1.8e-16 Score=128.00 Aligned_cols=75 Identities=37% Similarity=0.605 Sum_probs=72.4
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCChhhhccCCCCEEEEEEecCC
Q 017906 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSK 78 (364)
Q Consensus 1 MkI~VKtl~gk~~~ieV~~s~TV~dLK~kI~~~~g~~~ip~~~qkLif~GkiL~D~~tL~d~gIk~~s~I~v~v~k~k 78 (364)
|+|+||+.+|+.+.|+|++++||.+||++|+...| +++++|+|+|+||.|+|+++|++|||+++++|+|+++.+.
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~g---i~~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~g 75 (98)
T 1yx5_B 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 75 (98)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHTC---CCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCC
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHC---cChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeCCC
Confidence 89999999999999999999999999999999999 9999999999999999999999999999999999998764
No 44
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.68 E-value=7e-17 Score=129.88 Aligned_cols=75 Identities=27% Similarity=0.322 Sum_probs=71.2
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCChhhhccCCCCEEEEEEecCCC
Q 017906 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKV 79 (364)
Q Consensus 1 MkI~VKtl~gk~~~ieV~~s~TV~dLK~kI~~~~g~~~ip~~~qkLif~GkiL~D~~tL~d~gIk~~s~I~v~v~k~k~ 79 (364)
|+|+||+. |+.|.|+|++++||.+||++|+..++ +++++|||+|+||.|+|+++|++|+|+++++|||+++.+..
T Consensus 18 m~i~Vk~~-g~~~~~~v~~~~TV~~LK~~I~~~~g---ip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~~g 92 (96)
T 1wx8_A 18 IRVSVKTP-QDCHEFFLAENSNVRRFKKQISKYLH---CNADRLVLIFTGKILRDQDILSQRGILDGSTVHVVVRSHSG 92 (96)
T ss_dssp EEEEEECS-SSEEEEEEETTCCHHHHHHHHHHHTC---SCTTTBCCEETTEECCTTSCHHHHTCCTTEEEECCBCCSSC
T ss_pred EEEEEEEC-CeEEEEEECCCCCHHHHHHHHHHHhC---CCHHHEEEEECCEECCCcCCHHHCCCCCCCEEEEEEeCCCC
Confidence 78999998 99999999999999999999999999 99999999999999999999999999999999999887653
No 45
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.67 E-value=1.4e-16 Score=129.97 Aligned_cols=71 Identities=20% Similarity=0.132 Sum_probs=64.7
Q ss_pred EEEEEeCC----CcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCChhhhccCCCCEEEEEEe
Q 017906 2 KVFVKTLK----GTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLT 75 (364)
Q Consensus 2 kI~VKtl~----gk~~~ieV~~s~TV~dLK~kI~~~~g~~~ip~~~qkLif~GkiL~D~~tL~d~gIk~~s~I~v~v~ 75 (364)
.|.|+..+ +++|.|+|++++||.+||++|+++.| +|+++|||||+||+|+|+++|++|+|+++++|+||+.
T Consensus 17 ti~V~~~~~~~~~~~~~lev~~~~TV~~lK~kI~~k~g---ip~~qQrLI~~GKiL~D~~TL~~y~I~~gsti~vl~l 91 (100)
T 1wju_A 17 TIEVFLPPRLKKDRKNLLETRLHITGRELRSKIAETFG---LQENYIKIVINKKQLQLGKTLEEQGVAHNVKAMVLEL 91 (100)
T ss_dssp EEEEECCTTTCCSSSEEEEEESSSBHHHHHHHHHHHTT---CCSTTCEEEETTEECCTTSBHHHHTCCSSEEEEEECC
T ss_pred EEEEEecCCCCCCcEEEEEeCCcCHHHHHHHHHHHHHC---cCHHHeEEEeCCeECCCCCcHHHcCCCCCCEEEEEEE
Confidence 36677666 77999999999999999999999999 9999999999999999999999999999999965543
No 46
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.67 E-value=1.9e-16 Score=129.15 Aligned_cols=74 Identities=30% Similarity=0.353 Sum_probs=70.5
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCChhhhccCCCCEEEEEEecCC
Q 017906 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSK 78 (364)
Q Consensus 1 MkI~VKtl~gk~~~ieV~~s~TV~dLK~kI~~~~g~~~ip~~~qkLif~GkiL~D~~tL~d~gIk~~s~I~v~v~k~k 78 (364)
|+|+||+. |+.|.|+|++++||.+||++|+...| +++++|||+|+||.|+|+++|++|||++|++|+|+++++.
T Consensus 26 m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~qrLi~~Gk~L~D~~tL~~~gI~~g~~I~l~~~~~~ 99 (101)
T 2klc_A 26 MKVTVKTP-KEKEEFAVPENSSVQQFKEEISKRFK---SHTDQLVLIFAGKILKDQDTLSQHGIHDGLTVHLVIKTQN 99 (101)
T ss_dssp EEEEEECS-SCEEEEEECSCCCHHHHHHHHHHHHT---CCGGGEEEEETTEEECTTCCTGGGTCCTTCEEEEEECCSS
T ss_pred EEEEEEeC-CcEEEEEECCCCCHHHHHHHHHHHHC---cChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcCCC
Confidence 78999998 88999999999999999999999999 9999999999999999999999999999999999987654
No 47
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.67 E-value=1.5e-16 Score=129.59 Aligned_cols=75 Identities=27% Similarity=0.324 Sum_probs=70.6
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCChhhhccCCCCEEEEEEecCCC
Q 017906 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKV 79 (364)
Q Consensus 1 MkI~VKtl~gk~~~ieV~~s~TV~dLK~kI~~~~g~~~ip~~~qkLif~GkiL~D~~tL~d~gIk~~s~I~v~v~k~k~ 79 (364)
|+|+||+.+|+ |.|+|++++||.+||++|+...| +++++|||+|+||.|+|+++|++|+|+++++|+|+++.+..
T Consensus 23 m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~g---ip~~~QrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~r~~~~ 97 (100)
T 1yqb_A 23 IKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFK---AHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQHR 97 (100)
T ss_dssp EEEEEECSSCE-EEEEEETTCBHHHHHHHHHHHHT---CCGGGEEEEETTEECCTTSBHHHHTCCTTCEEEEEECCCCS
T ss_pred EEEEEEcCCCc-EEEEECCCCcHHHHHHHHHHHHC---cChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEcCCCC
Confidence 78999999885 79999999999999999999999 99999999999999999999999999999999999887653
No 48
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.67 E-value=2e-16 Score=134.17 Aligned_cols=76 Identities=29% Similarity=0.329 Sum_probs=69.1
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCChhhhccCCCCEEEEEEecCCCC
Q 017906 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVS 80 (364)
Q Consensus 1 MkI~VKtl~gk~~~ieV~~s~TV~dLK~kI~~~~g~~~ip~~~qkLif~GkiL~D~~tL~d~gIk~~s~I~v~v~k~k~~ 80 (364)
|+|+||++ |+.|.|+|++++||.+||++|+.++| +++++|||+|+||+|+|+++|++|+|+++++|+|+++++...
T Consensus 33 m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~lv~~~~gg~ 108 (125)
T 1j8c_A 33 IKVTVKTP-KEKEEFAVPENSSVQQFKEAISKRFK---SQTDQLVLIFAGKILKDQDTLIQHGIHDGLTVHLVIKRDPNS 108 (125)
T ss_dssp EEEEEECS-SCEEEEEECTTCCHHHHHHHHHHHHC---SCSSSEEEEETTEEESTTSCGGGTTCSSSEEEEEEEC-----
T ss_pred EEEEEEeC-CeEEEEEECCCCcHHHHHHHHHHHHC---cCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEeccCCCC
Confidence 78999998 99999999999999999999999999 999999999999999999999999999999999999876543
No 49
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=99.49 E-value=4.7e-18 Score=130.43 Aligned_cols=75 Identities=27% Similarity=0.408 Sum_probs=72.1
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCChhhhccCCCCEEEEEEecCC
Q 017906 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSK 78 (364)
Q Consensus 1 MkI~VKtl~gk~~~ieV~~s~TV~dLK~kI~~~~g~~~ip~~~qkLif~GkiL~D~~tL~d~gIk~~s~I~v~v~k~k 78 (364)
|+|+||+.+|++|.++|++++||.+||++|+...| ++++.|+|+|+|+.|+|+++|++|||+++++|+|+++.+.
T Consensus 1 M~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~g---i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~rlrg 75 (76)
T 3b1l_X 1 MIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQQG---VPADQLRVIFAGKELPNHLTVQNCDLEQQSIVHIVQRPRR 75 (76)
Confidence 89999999999999999999999999999999999 9999999999999999999999999999999999988653
No 50
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.66 E-value=3.1e-16 Score=131.33 Aligned_cols=75 Identities=20% Similarity=0.229 Sum_probs=64.8
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHH------hCCCCCCCCCeEEEeCCeecCCCCChhhhccCCCCE--EEE
Q 017906 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETV------QGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSF--VVV 72 (364)
Q Consensus 1 MkI~VKtl~gk~~~ieV~~s~TV~dLK~kI~~~------~g~~~ip~~~qkLif~GkiL~D~~tL~d~gIk~~s~--I~v 72 (364)
|+|+||+++|++++|+|++++||.+||++|+.. .+.. +++++|||||.||+|+|+++|++|+|+.+++ |||
T Consensus 17 m~I~vKtl~G~t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p-~p~~qqrLIy~GK~LeD~~TL~~y~I~~~~~~tlhL 95 (116)
T 1wgh_A 17 INLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQV-SSPNILRLIYQGRFLHGNVTLGALKLPFGKTTVMHL 95 (116)
T ss_dssp EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCC-CCTTTEEEEETTEEECSSCBTTTTTCCSSCEEEEEE
T ss_pred EEEEEEeCCCCEEEEEECCcCHHHHHHHHHHHhcccccccCCC-CChHHEEEEECCcCCCCCCcHHHcCCCCCCceEEEE
Confidence 789999999999999999999999999999994 3411 3699999999999999999999999987764 555
Q ss_pred EEec
Q 017906 73 MLTK 76 (364)
Q Consensus 73 ~v~k 76 (364)
+++.
T Consensus 96 vlr~ 99 (116)
T 1wgh_A 96 VARE 99 (116)
T ss_dssp EECS
T ss_pred EccC
Confidence 5544
No 51
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.66 E-value=2.4e-16 Score=126.64 Aligned_cols=73 Identities=22% Similarity=0.342 Sum_probs=69.7
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCChhhhccCCCCEEEEEEecCC
Q 017906 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSK 78 (364)
Q Consensus 1 MkI~VKtl~gk~~~ieV~~s~TV~dLK~kI~~~~g~~~ip~~~qkLif~GkiL~D~~tL~d~gIk~~s~I~v~v~k~k 78 (364)
|+|+||+ |+++.|+|++++||.+||++|++..| +|+++|+|+|+||.|+|+++|++|+|+++++|+|+++.+.
T Consensus 20 m~I~Vk~--g~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~qrLi~~Gk~L~D~~tL~~y~I~~gstI~lv~rl~G 92 (93)
T 2l7r_A 20 MQLFVRA--QELHTFEVTGQETVAQIKAHVASLEG---IAPEDQVVLLAGAPLEDEATLGQCGVEALTTLEVAGRMLG 92 (93)
T ss_dssp CEEEEES--SSEEEEECCSSCBHHHHHHHHHHHHT---CCGGGCEEEETTEECCTTSBHHHHTCCSSCEEEEECCCCC
T ss_pred EEEEEEC--CCEEEEEeCCCCcHHHHHHHHHHHhC---cChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCC
Confidence 7999997 89999999999999999999999999 9999999999999999999999999999999999987653
No 52
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=99.65 E-value=6.1e-16 Score=137.59 Aligned_cols=77 Identities=35% Similarity=0.549 Sum_probs=73.2
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCChhhhccCCCCEEEEEEecCCCC
Q 017906 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVS 80 (364)
Q Consensus 1 MkI~VKtl~gk~~~ieV~~s~TV~dLK~kI~~~~g~~~ip~~~qkLif~GkiL~D~~tL~d~gIk~~s~I~v~v~k~k~~ 80 (364)
|+|+||+++|++|.|+|++++||.+||++|+.+.| +|+++|||+|+||.|+|+++|++|+|+++++|||+++.+...
T Consensus 1 MqI~Vk~~~Gk~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~QrLi~~Gk~L~D~~tL~~y~I~~gstI~Lvlrl~GG~ 77 (169)
T 3l0w_B 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGG 77 (169)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHC---CCTTTEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCCC--
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHHC---cCHHHEEEEECCccccCcCcHHHcCCCCCCEEEEEEEecccc
Confidence 89999999999999999999999999999999999 999999999999999999999999999999999999877543
No 53
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.64 E-value=3.6e-16 Score=126.56 Aligned_cols=72 Identities=21% Similarity=0.276 Sum_probs=67.3
Q ss_pred CEEEEEeCCCcEE-EEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCChhhhccCCCCEEEEEEecC
Q 017906 1 MKVFVKTLKGTHF-EIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKS 77 (364)
Q Consensus 1 MkI~VKtl~gk~~-~ieV~~s~TV~dLK~kI~~~~g~~~ip~~~qkLif~GkiL~D~~tL~d~gIk~~s~I~v~v~k~ 77 (364)
|+|+|| +.|+.| .|+|++++||.+||++|++.+| +++++|||+|+||.|+|+ +|++|+|+++++|+||.+..
T Consensus 8 m~i~Vk-~~g~~~~~l~v~~~~TV~~lK~~I~~~tg---ip~~~QkLi~~Gk~L~D~-tL~~~~I~~g~~i~l~~~~~ 80 (96)
T 1wgg_A 8 YSVTVK-WGKEKFEGVELNTDEPPMVFKAQLFALTG---VQPARQKVMVKGGTLKDD-DWGNIKMKNGMTVLMMGSAD 80 (96)
T ss_dssp EEEEEE-ETTEEEEEEEEESSSCHHHHHHHHHHHTC---CCTTTSCCEETTEECCSS-CCCSCCCCSSCEEECCCCCC
T ss_pred EEEEEE-ECCEEEEEEEECCCCcHHHHHHHHHHHHC---cCHHHeEEEECCcCCCCC-CHHHCCCCCCCEEEEEecch
Confidence 689999 578999 6999999999999999999999 999999999999999999 99999999999999987544
No 54
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.64 E-value=6.8e-16 Score=127.13 Aligned_cols=74 Identities=23% Similarity=0.152 Sum_probs=68.4
Q ss_pred CEEEEEeCCC---cEEEEEeC--------C-CCcHHHHHHHHHHHh--CCCCCCCCC-eEEEeCCeecCCCCChhhhccC
Q 017906 1 MKVFVKTLKG---THFEIEVK--------P-EDKVSDVKKNIETVQ--GSDVYPASQ-QMLIHQGKVLKDVTTLEENKVA 65 (364)
Q Consensus 1 MkI~VKtl~g---k~~~ieV~--------~-s~TV~dLK~kI~~~~--g~~~ip~~~-qkLif~GkiL~D~~tL~d~gIk 65 (364)
|+|+||+.++ ++|.|+|+ + ++||.+||++|+..+ | +++++ |||||+||.|+|+++|++|+|+
T Consensus 13 ~~i~Vk~~~~~~~~~~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~g---ip~~~~qrLi~~Gk~L~D~~tL~~y~i~ 89 (107)
T 1x1m_A 13 WHLAVKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQES---VPDPELIDLIYCGRKLKDDQTLDFYGIQ 89 (107)
T ss_dssp CCEEEEETTCTTSCCEEECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTT---CCCSSSEEEEETTEECCTTCBHHHHTCC
T ss_pred eEEEEEeCCCCCccEEEEEecCccccccCcccCCHHHHHHHHHHHhccC---CChhhcEEEEECCeECCCCCcHHHcCCC
Confidence 7899999999 89999954 4 499999999999999 8 99999 9999999999999999999999
Q ss_pred CCCEEEEEEecC
Q 017906 66 ENSFVVVMLTKS 77 (364)
Q Consensus 66 ~~s~I~v~v~k~ 77 (364)
++++|||+++.+
T Consensus 90 ~g~~i~lv~~~~ 101 (107)
T 1x1m_A 90 PGSTVHVLRKSW 101 (107)
T ss_dssp TTCEEEEEESSC
T ss_pred CCCEEEEEeCCC
Confidence 999999998764
No 55
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=99.64 E-value=9.8e-16 Score=126.90 Aligned_cols=75 Identities=37% Similarity=0.605 Sum_probs=72.0
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCChhhhccCCCCEEEEEEecCC
Q 017906 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSK 78 (364)
Q Consensus 1 MkI~VKtl~gk~~~ieV~~s~TV~dLK~kI~~~~g~~~ip~~~qkLif~GkiL~D~~tL~d~gIk~~s~I~v~v~k~k 78 (364)
|+|+||+++|+.+.++|++++||.+||++|+...| +++++|||+|+||.|+|+++|++|+|+++++|+|+++.+.
T Consensus 36 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~qrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~rl~G 110 (111)
T 2ojr_A 36 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 110 (111)
T ss_dssp EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHC---CCTTTEEEEETTEECCSSCBTTTTTCCTTCEEEEEECCCC
T ss_pred EEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHHHC---cCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCC
Confidence 78999999999999999999999999999999999 9999999999999999999999999999999999998653
No 56
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=99.63 E-value=5.3e-16 Score=130.07 Aligned_cols=72 Identities=22% Similarity=0.290 Sum_probs=67.7
Q ss_pred CEEEEEeCCCc-EEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCChhhhccC-------CCCEEEE
Q 017906 1 MKVFVKTLKGT-HFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVA-------ENSFVVV 72 (364)
Q Consensus 1 MkI~VKtl~gk-~~~ieV~~s~TV~dLK~kI~~~~g~~~ip~~~qkLif~GkiL~D~~tL~d~gIk-------~~s~I~v 72 (364)
|.++|+...++ ++.|+|++++||.+||++|+.+.| +|+++|||||+||+|+|+++|++|||+ .+++|+|
T Consensus 1 M~mfl~ir~~ktti~lev~~sdTV~~lK~kI~~~eg---IP~~qQrLi~~Gk~LeD~~TLsdy~I~~~~a~~q~~stL~L 77 (118)
T 2fnj_B 1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILK---RPPEEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGL 77 (118)
T ss_dssp CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHC---CCGGGEEEEETTEECCTTSBHHHHTCCTTTSBTTBCEEEEE
T ss_pred CcEEEEEecCCEEEEEEeCCcChHHHHHHHHHHHhC---CCHHHeEEEECCeECCCCCCHHHcCcccccccCCCCCEEEE
Confidence 77888877776 599999999999999999999999 999999999999999999999999999 6999999
Q ss_pred EEe
Q 017906 73 MLT 75 (364)
Q Consensus 73 ~v~ 75 (364)
+++
T Consensus 78 ~lr 80 (118)
T 2fnj_B 78 AFR 80 (118)
T ss_dssp EEB
T ss_pred Eec
Confidence 998
No 57
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=99.62 E-value=6.1e-16 Score=131.21 Aligned_cols=74 Identities=20% Similarity=0.253 Sum_probs=65.2
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHH------HhCCCCC--CCCCeEEEeCCeecCCCCChhhhccCCCCE--E
Q 017906 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIET------VQGSDVY--PASQQMLIHQGKVLKDVTTLEENKVAENSF--V 70 (364)
Q Consensus 1 MkI~VKtl~gk~~~ieV~~s~TV~dLK~kI~~------~~g~~~i--p~~~qkLif~GkiL~D~~tL~d~gIk~~s~--I 70 (364)
|+|+||+++|++++|+|++++||.+||++|+. +.+ + ++++|||||+||+|+|+++|++|+|+++++ |
T Consensus 18 m~I~vktl~G~~~~lev~~s~TV~~lK~~I~~~~p~dwke~---ip~~~~~qrLIy~GK~LeD~~TL~~y~I~~~~~~tl 94 (125)
T 2gow_A 18 INLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEE---QVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTVM 94 (125)
T ss_dssp EEEEEECTTSCEEEEEECTTSBHHHHHHHHHSSCCCSCCCC---TTCCGGGEEEESSSSEEESSCBTGGGCCCTTSEEEE
T ss_pred EEEEEEeCCCCEEEEEeCCccHHHHHHHHHHHHCCcccccC---CCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceEE
Confidence 68999999999999999999999999999999 455 5 589999999999999999999999998885 4
Q ss_pred EEEEecC
Q 017906 71 VVMLTKS 77 (364)
Q Consensus 71 ~v~v~k~ 77 (364)
||+++.+
T Consensus 95 hlv~r~~ 101 (125)
T 2gow_A 95 HLVARET 101 (125)
T ss_dssp EEEECSC
T ss_pred EEEecCC
Confidence 5555443
No 58
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=99.62 E-value=1.7e-15 Score=126.32 Aligned_cols=76 Identities=33% Similarity=0.522 Sum_probs=72.8
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCChhhhccCCCCEEEEEEecCCC
Q 017906 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKV 79 (364)
Q Consensus 1 MkI~VKtl~gk~~~ieV~~s~TV~dLK~kI~~~~g~~~ip~~~qkLif~GkiL~D~~tL~d~gIk~~s~I~v~v~k~k~ 79 (364)
++|+||+++|+++.|+|++++||.+||++|+...| +|+++|+|+|+|+.|+|+++|++|+|+++++|+|+++.+..
T Consensus 10 ~~i~vk~l~G~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~~~~GG 85 (114)
T 2kdi_A 10 FQIFAKTLTGKTITLEVESSDTIDNVKSKIQDKEG---IPPDQQRLIWAGKQLEDGRTLSDYNIQRESTLHLVLRLRGG 85 (114)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHC---CCGGGEEEEETTEECCTTCBTTTTTCCSSCEEEEEECCCSS
T ss_pred EEEEEEeCCCcEEEEEECCCCcHHHHHHHHHHHHC---cChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEEcCCC
Confidence 58999999999999999999999999999999999 99999999999999999999999999999999999987654
No 59
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=99.62 E-value=1.1e-15 Score=133.40 Aligned_cols=76 Identities=24% Similarity=0.292 Sum_probs=72.1
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCChhhhccCCCCEEEEEEecCCC
Q 017906 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKV 79 (364)
Q Consensus 1 MkI~VKtl~gk~~~ieV~~s~TV~dLK~kI~~~~g~~~ip~~~qkLif~GkiL~D~~tL~d~gIk~~s~I~v~v~k~k~ 79 (364)
|+|+||+++|+++.|+|++++||.+||++|+.+.| +|+++|+|+|+|+.|+|+++|++|+|+++++|+|+++.+..
T Consensus 82 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~g---ip~~~q~L~~~G~~L~d~~tL~~y~i~~g~~l~l~~rl~GG 157 (159)
T 3rt3_B 82 LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEG---VQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGG 157 (159)
T ss_dssp EEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHT---CCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCC--
T ss_pred EEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHHC---CCHHHEEEEECCeecCCCCCHHHcCCCCCCEEEEEEecCCC
Confidence 78999999999999999999999999999999999 99999999999999999999999999999999999987653
No 60
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=99.62 E-value=7.3e-16 Score=128.97 Aligned_cols=73 Identities=22% Similarity=0.286 Sum_probs=69.2
Q ss_pred CEEEEEeCCCc-EEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCChhhhccCC-------CCEEEE
Q 017906 1 MKVFVKTLKGT-HFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAE-------NSFVVV 72 (364)
Q Consensus 1 MkI~VKtl~gk-~~~ieV~~s~TV~dLK~kI~~~~g~~~ip~~~qkLif~GkiL~D~~tL~d~gIk~-------~s~I~v 72 (364)
|.|+|+...++ ++.++|++++||.+||++|+.+.| +|+++|||||+||+|+|+++|++|||++ +++|+|
T Consensus 1 m~vFl~Ikr~ktTI~ldve~sdTV~~lK~kI~~~~g---iPp~qQrLI~~Gk~LeD~kTL~dy~I~~~ta~~q~~atl~L 77 (118)
T 4ajy_B 1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILK---RPPDEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGL 77 (118)
T ss_dssp CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHC---CCGGGEEEEETTEECCTTSBTTTTTCCGGGSBTTBCEEEEE
T ss_pred CceEEEEecCCEEEEEEcCCCChHHHHHHHHHHHHC---CCHHHeEEEeCCeECCCcCCHHHcCCCcCcccCCCCCEEEE
Confidence 78888887777 788999999999999999999999 9999999999999999999999999999 999999
Q ss_pred EEec
Q 017906 73 MLTK 76 (364)
Q Consensus 73 ~v~k 76 (364)
+++.
T Consensus 78 vlr~ 81 (118)
T 4ajy_B 78 AFRA 81 (118)
T ss_dssp EECC
T ss_pred EEec
Confidence 9986
No 61
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.62 E-value=1.1e-15 Score=129.58 Aligned_cols=79 Identities=16% Similarity=0.262 Sum_probs=67.0
Q ss_pred CEEEEEeCCCcEE-EEEeCCCCcHHHHHHHHHHHhC--CCCCCC--CCeEEEeCCeecCCCCChhhhccCCC------CE
Q 017906 1 MKVFVKTLKGTHF-EIEVKPEDKVSDVKKNIETVQG--SDVYPA--SQQMLIHQGKVLKDVTTLEENKVAEN------SF 69 (364)
Q Consensus 1 MkI~VKtl~gk~~-~ieV~~s~TV~dLK~kI~~~~g--~~~ip~--~~qkLif~GkiL~D~~tL~d~gIk~~------s~ 69 (364)
|+|+||+++|+.| .+++++++||.+||++|+...+ +..+|+ ++|||||+||+|+|+++|++|+|.++ .+
T Consensus 17 ~~i~~kt~~G~~i~~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy~GK~LeD~~TLsdy~I~~~~~~~~v~t 96 (126)
T 1se9_A 17 LEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLENSKTVKDYRSPVSNLAGAVTT 96 (126)
T ss_dssp EEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEECCTTSBGGGGSCCTTSCTTCCEE
T ss_pred EEEEEEECCCCEEEeeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEEECCeECcCCCcHHHcCCCcCCccCCcEE
Confidence 6899999999988 6999999999999999965432 112775 79999999999999999999999998 46
Q ss_pred EEEEEecCCC
Q 017906 70 VVVMLTKSKV 79 (364)
Q Consensus 70 I~v~v~k~k~ 79 (364)
+||+++.+..
T Consensus 97 mhlVlrl~g~ 106 (126)
T 1se9_A 97 MHVIIQAPVT 106 (126)
T ss_dssp EEEEECCCSS
T ss_pred EEEEeccCCc
Confidence 7777776643
No 62
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=99.62 E-value=5.5e-16 Score=126.37 Aligned_cols=71 Identities=20% Similarity=0.239 Sum_probs=64.2
Q ss_pred CEEEEEeCCCc--EEEEEeCCCCcHHHHHHHHHHHh-CCCCCCCCCeEEEeCCeecCCCCChhhh--ccCCCCEEEEE
Q 017906 1 MKVFVKTLKGT--HFEIEVKPEDKVSDVKKNIETVQ-GSDVYPASQQMLIHQGKVLKDVTTLEEN--KVAENSFVVVM 73 (364)
Q Consensus 1 MkI~VKtl~gk--~~~ieV~~s~TV~dLK~kI~~~~-g~~~ip~~~qkLif~GkiL~D~~tL~d~--gIk~~s~I~v~ 73 (364)
|+|+||+++|+ .+.|+|++++||.+||++|+.+. |. +++++|||||+||+|+|+++|++| +|+++++|+|+
T Consensus 24 m~I~VK~~~g~~~~i~l~v~~~~TV~~LK~~I~~~~~g~--pp~~~QrLIy~Gk~L~D~~tL~~y~~~I~~~~tihLv 99 (99)
T 2kdb_A 24 VTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSK--PLTKDQRLVYSGRLLPDHLQLKDILRKQDEYHMVHLV 99 (99)
T ss_dssp EEEEEECTTSSSCCEEEEECTTSBHHHHHHHHHHHSTTC--CCTTTCCEEETTEEECTTSBTHHHHTTTCSEEEEEEC
T ss_pred EEEEEEcCCCCEEEEEEEcCCCCHHHHHHHHHHHHhcCC--CChhhEEEEECCEECCCCCCHHHHhcCCCCCCEEEeC
Confidence 78999999998 67899999999999999999974 51 446999999999999999999999 99999999874
No 63
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.62 E-value=2.9e-16 Score=128.20 Aligned_cols=72 Identities=29% Similarity=0.517 Sum_probs=68.0
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCChhhhccCCCCEEEEEEec
Q 017906 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTK 76 (364)
Q Consensus 1 MkI~VKtl~gk~~~ieV~~s~TV~dLK~kI~~~~g~~~ip~~~qkLif~GkiL~D~~tL~d~gIk~~s~I~v~v~k 76 (364)
|+|+||+ +|+.|.|+|++++||.+||++|+..+| +++++|||+|+||.|+|+++|++|||++|++|+|+++.
T Consensus 29 i~I~Vk~-~g~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~QrLi~~Gk~L~D~~tL~~~gI~~g~tI~lv~~~ 100 (101)
T 3m63_B 29 LNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANG---IPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKSQ 100 (101)
T ss_dssp CCEEEEC-SSCCCCBCCCTTSBHHHHHHHHHHHHS---CCSTTCCEEETTEECCTTSBTTTTTCCTTEEEEECCCC
T ss_pred EEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHHC---cChHHEEEEECCEECCCcCcHHHCCCCCCCEEEEEeCC
Confidence 5688997 899999999999999999999999999 99999999999999999999999999999999998754
No 64
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=99.62 E-value=1.4e-15 Score=121.38 Aligned_cols=72 Identities=25% Similarity=0.409 Sum_probs=68.2
Q ss_pred CEEEEEeCCCcEEEE-EeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEE---eCCeecCCCCChhhhccCCCCEEEEEEec
Q 017906 1 MKVFVKTLKGTHFEI-EVKPEDKVSDVKKNIETVQGSDVYPASQQMLI---HQGKVLKDVTTLEENKVAENSFVVVMLTK 76 (364)
Q Consensus 1 MkI~VKtl~gk~~~i-eV~~s~TV~dLK~kI~~~~g~~~ip~~~qkLi---f~GkiL~D~~tL~d~gIk~~s~I~v~v~k 76 (364)
|+|+||. .|++|.| +|++++||.+||++|++++| +|+++|||+ |+||.|+|+.+|++|+|+++++|+||...
T Consensus 8 m~i~Vk~-~g~~~~i~~v~~~~TV~~lK~~I~~~~g---ip~~~QkLi~~k~~Gk~L~D~~~L~~~~i~~g~~l~l~~~~ 83 (90)
T 1v5t_A 8 LPIIVKW-GGQEYSVTTLSEDDTVLDLKQFLKTLTG---VLPERQKLLGLKVKGKPAENDVKLGALKLKPNTKIMMMGTR 83 (90)
T ss_dssp CCEEEEE-TTEEEEECSCCSSSBHHHHHHHHHHHTC---CCTTTCEEESCEETTEECCTTSBHHHHTCCTTEEEEEECCC
T ss_pred EEEEEEE-CCEEEEEEEeCCCCCHHHHHHHHHHHHC---cCHHHeEEEeeccCCcCcCCCCCHHHcCCCCCCEEEEEecC
Confidence 7899995 8899999 99999999999999999999 999999999 99999999999999999999999998754
No 65
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.62 E-value=1.9e-15 Score=120.61 Aligned_cols=73 Identities=29% Similarity=0.408 Sum_probs=67.1
Q ss_pred CEEEEEeCCCcEEEEEeCCC-----CcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCC-CCChhhhccCCCCEEEEEE
Q 017906 1 MKVFVKTLKGTHFEIEVKPE-----DKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKD-VTTLEENKVAENSFVVVML 74 (364)
Q Consensus 1 MkI~VKtl~gk~~~ieV~~s-----~TV~dLK~kI~~~~g~~~ip~~~qkLif~GkiL~D-~~tL~d~gIk~~s~I~v~v 74 (364)
|+|+||+ .|+.|.|+|+++ +||.+||++|+..+| +|+++|||+|+||.|+| +++|++|+|+++++|+|+.
T Consensus 8 ~~v~Vk~-~~~~~~i~v~~~~~~~~~TV~~LK~~i~~~~g---ip~~~qrL~~~Gk~L~D~~~~L~~~~i~~g~~i~l~~ 83 (92)
T 1wxv_A 8 LTVTVTH-SNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIG---VPQSFQKLIFKGKSLKEMETPLSALGIQDGCRVMLIG 83 (92)
T ss_dssp EEEEEEC-SSSEEEEEECCCSSSSSCBHHHHHHHHHHHTC---CCTTTCEEEETTEEECCSSSBHHHHTCCSSEEEEEES
T ss_pred EEEEEEE-CCEEEEEEECCCcCcccCcHHHHHHHHHHHHC---cCHHHEEEEECCeecCCCcccHHHCCCCCCCEEEEEe
Confidence 6899997 588999999995 999999999999999 99999999999999988 6689999999999999987
Q ss_pred ecC
Q 017906 75 TKS 77 (364)
Q Consensus 75 ~k~ 77 (364)
++.
T Consensus 84 ~~~ 86 (92)
T 1wxv_A 84 KKN 86 (92)
T ss_dssp CCS
T ss_pred cCC
Confidence 554
No 66
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.61 E-value=1.2e-15 Score=126.39 Aligned_cols=76 Identities=24% Similarity=0.324 Sum_probs=72.0
Q ss_pred CEEEEEeC---CCcEEEEEeCC-CCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCChhhhccCCCCEEEEEEec
Q 017906 1 MKVFVKTL---KGTHFEIEVKP-EDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTK 76 (364)
Q Consensus 1 MkI~VKtl---~gk~~~ieV~~-s~TV~dLK~kI~~~~g~~~ip~~~qkLif~GkiL~D~~tL~d~gIk~~s~I~v~v~k 76 (364)
|+|+||+. +|+.+.|+|++ ++||.+||++|+..+| +|+++|+|+|+|++|+|+++|++|+|+++++|+|+++.
T Consensus 28 i~i~Vk~~~~~~g~~~~l~v~~l~~TV~~LK~~I~~~~g---ip~~~QrL~~~Gk~L~D~~tL~~y~I~~g~~l~l~~r~ 104 (111)
T 1we6_A 28 ATIRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQ---IPANKQKLSGKAGFLKDNMSLAHYNVGAGEILTLSLRE 104 (111)
T ss_dssp EEEEECCTTCSSSCCEEEEESCSSSBHHHHHHHHHHHTT---CCTTTSEEECSSSBCCTTSBTTTTTCSSSCEEEEECSS
T ss_pred EEEEEEecccCCCcEEEEEecCCCCcHHHHHHHHHHHHC---CCHHHeEEEECCEECCCCCcHHHCCCCCCCEEEEEEEc
Confidence 68999998 88999999998 9999999999999999 99999999999999999999999999999999999987
Q ss_pred CCC
Q 017906 77 SKV 79 (364)
Q Consensus 77 ~k~ 79 (364)
+..
T Consensus 105 ~GG 107 (111)
T 1we6_A 105 RSG 107 (111)
T ss_dssp CCS
T ss_pred CCC
Confidence 654
No 67
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=99.61 E-value=2.1e-15 Score=133.66 Aligned_cols=74 Identities=38% Similarity=0.618 Sum_probs=71.7
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCChhhhccCCCCEEEEEEecC
Q 017906 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKS 77 (364)
Q Consensus 1 MkI~VKtl~gk~~~ieV~~s~TV~dLK~kI~~~~g~~~ip~~~qkLif~GkiL~D~~tL~d~gIk~~s~I~v~v~k~ 77 (364)
|+|+||+++|++|.|+|++++||.+||++|+.++| +++++|||+|+|+.|+|+++|++|+|+++++|+|+++.+
T Consensus 21 m~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~g---ip~~~QrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~~~~ 94 (172)
T 3u30_A 21 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 94 (172)
T ss_dssp EEEEEEETTTEEEEEEECTTCBHHHHHHHHHHHHC---CCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEECCC
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHC---cChHHEEEEECCccccccCCHhHcCCcccceeeeeeccc
Confidence 79999999999999999999999999999999999 999999999999999999999999999999999998764
No 68
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.60 E-value=2.8e-15 Score=118.50 Aligned_cols=70 Identities=24% Similarity=0.436 Sum_probs=66.3
Q ss_pred EEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCChhhhccCCCCEEEEEEe
Q 017906 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLT 75 (364)
Q Consensus 3 I~VKtl~gk~~~ieV~~s~TV~dLK~kI~~~~g~~~ip~~~qkLif~GkiL~D~~tL~d~gIk~~s~I~v~v~ 75 (364)
+++++++|+.|.|+|++++||.+||++|+...| +|+++|||+|+||.|+|+++|++|+|++|++|+|+++
T Consensus 14 ~~~~~~~g~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~l~l~~s 83 (85)
T 2kd0_A 14 KLTVKFGGKSIPLSVSPDCTVKDLKSQLQPITN---VLPRGQKLIFKGKVLVETSTLKQSDVGSGAKLMLMAS 83 (85)
T ss_dssp EEEEEETTEEEEEEECTTSBHHHHHHHHHHHHC---CCTTTCEEEETTEECCTTCBTTTTTCCTTEEEEEECC
T ss_pred EEEEEECCEEEEEEECCCCcHHHHHHHHHHHHC---cChHHEEEEECCeECCCcCCHHHCCCCCCCEEEEEEe
Confidence 567778999999999999999999999999999 9999999999999999999999999999999999864
No 69
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=99.60 E-value=2.8e-15 Score=130.85 Aligned_cols=73 Identities=30% Similarity=0.420 Sum_probs=70.7
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEE-e-CCeecCCCCChhhhccCCCCEEEEEEec
Q 017906 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLI-H-QGKVLKDVTTLEENKVAENSFVVVMLTK 76 (364)
Q Consensus 1 MkI~VKtl~gk~~~ieV~~s~TV~dLK~kI~~~~g~~~ip~~~qkLi-f-~GkiL~D~~tL~d~gIk~~s~I~v~v~k 76 (364)
|+|+||+++|++|.++|++++||.+||++|+..+| +|+++|||+ | +|+.|+|+++|++|+|+++++|+++++.
T Consensus 3 m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~g---ip~~~QrL~~~~~g~~L~d~~tL~~y~i~~~~~l~l~~~~ 77 (159)
T 3rt3_B 3 WDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIG---VHAFQQRLAVHPSGVALQDRVPLASQGLGPGSTVLLVVDK 77 (159)
T ss_dssp CEEEEEETTSCEEEEECCTTCCHHHHHHHHHHHHC---CCGGGEEEEEETTCCBCCTTSCGGGGTCCTTCEEEEEECC
T ss_pred eEEEEEECCCCEEEEEeCCCCcHHHHHHHHHHHhC---CCHHHEEEEEcCCCCCCCCCCCHHHcCCCCCCEEEEEccC
Confidence 79999999999999999999999999999999999 999999999 9 7999999999999999999999999873
No 70
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=99.60 E-value=1.9e-15 Score=136.68 Aligned_cols=77 Identities=35% Similarity=0.543 Sum_probs=73.7
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCChhhhccCCCCEEEEEEecCCCC
Q 017906 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVS 80 (364)
Q Consensus 1 MkI~VKtl~gk~~~ieV~~s~TV~dLK~kI~~~~g~~~ip~~~qkLif~GkiL~D~~tL~d~gIk~~s~I~v~v~k~k~~ 80 (364)
|+|+||+++|++|.|+|++++||.+||++|+..+| +|+++|+|+|+|+.|+|+.+|++|+|+++++|+|+++.+...
T Consensus 106 MqI~VKtl~Gkt~~l~V~~s~TV~~LK~kI~~~~g---Ip~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~LvlrlrGG~ 182 (189)
T 3q3f_A 106 GQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGG 182 (189)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHC---CCGGGCCEEETTEECCTTCBGGGGTCCTTCEEEECCCCCCCC
T ss_pred eeeeeecCCCCEEEEEeCCCCcHHHHHHHHHhccC---CCHHHEEEEECCEECCCCCCHHHCCCCCCCEEEEEEEcCCCC
Confidence 89999999999999999999999999999999999 999999999999999999999999999999999999876543
No 71
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.59 E-value=1.3e-15 Score=122.96 Aligned_cols=71 Identities=23% Similarity=0.365 Sum_probs=65.7
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCChhhhccCCCCEEEEEEec
Q 017906 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTK 76 (364)
Q Consensus 1 MkI~VKtl~gk~~~ieV~~s~TV~dLK~kI~~~~g~~~ip~~~qkLif~GkiL~D~~tL~d~gIk~~s~I~v~v~k 76 (364)
|+|+|| +.|++|.|+|++++||.+||++|+..+| +|+++|||+|+||.| |+.+|++|+|+++++|+|+.++
T Consensus 18 ~~i~Vk-~~g~~~~i~v~~~~TV~~LK~~I~~~tg---ip~~~QrL~~~Gk~L-dd~tL~~~~i~~g~~i~lv~~~ 88 (95)
T 1v86_A 18 VDLKII-WNKTKHDVKVPLDSTGSELKQKIHSITG---LPPAMQKVMYKGLVP-EDKTLREIKVTSGAKIMVVGST 88 (95)
T ss_dssp EEEEEE-ETTEEEEEEECTTSBHHHHHHHHHHHHC---SCSTTCCCBSSSBCC-SSSBHHHHCCCTTEEEEECCSS
T ss_pred EEEEEE-ECCEEEEEEECCCCcHHHHHHHHHHHHC---cCHHHeEEEECCeeC-CcCcHHHCCCCCCCEEEEEecc
Confidence 678999 6789999999999999999999999999 999999999999999 5569999999999999998654
No 72
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=99.59 E-value=4.5e-15 Score=122.07 Aligned_cols=73 Identities=19% Similarity=0.250 Sum_probs=68.5
Q ss_pred CEEEEEeCCC--cEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCChhhhcc-CCCCEEEEEEec
Q 017906 1 MKVFVKTLKG--THFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKV-AENSFVVVMLTK 76 (364)
Q Consensus 1 MkI~VKtl~g--k~~~ieV~~s~TV~dLK~kI~~~~g~~~ip~~~qkLif~GkiL~D~~tL~d~gI-k~~s~I~v~v~k 76 (364)
|+|+|++..+ .+++|+|++++||.+||++|++++| +|++.|||+|+|+.|+|+++|.+||| ++|++|||++..
T Consensus 25 l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I~~k~G---ipp~~QRli~ggkll~D~~TL~~ygI~~~G~t~hL~l~~ 100 (105)
T 4dbg_A 25 LWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYG---FPPVLQQWVIGQRLARDQETLHSHGVRQNGDSAYLYLLS 100 (105)
T ss_dssp EEEEEEESSSCCEEEEEEECTTCBHHHHHHHHHHHHC---CCGGGEEEEETTEEECTTCBTGGGTCCSTTCEEEEEECC
T ss_pred EEEEEEccCCCCceEEEEECCcChHHHHHHHHHHHhC---CCHHHEEEeccCeEccCcCcHHHcCCCCCCCEEEEEEEe
Confidence 6899999875 6899999999999999999999999 99999999999999999999999999 599999999854
No 73
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=99.57 E-value=1.8e-16 Score=134.57 Aligned_cols=76 Identities=36% Similarity=0.555 Sum_probs=0.0
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCChhhhccCCCCEEEEEEecCCC
Q 017906 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKV 79 (364)
Q Consensus 1 MkI~VKtl~gk~~~ieV~~s~TV~dLK~kI~~~~g~~~ip~~~qkLif~GkiL~D~~tL~d~gIk~~s~I~v~v~k~k~ 79 (364)
|+|+||+++|++|.|+|++++||.+||.+|+..+| +|++.|+|+|+|+.|+|+.+|++|+|+++++|+|+++.+..
T Consensus 1 M~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~QrLi~~Gk~L~D~~tL~~~~I~~gsti~l~~rl~GG 76 (128)
T 3u5e_m 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76 (128)
T ss_dssp -------------------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhC---cChHHEEEEECCEECCCCCchhhhccCCCCEEEEEEEcCCC
Confidence 89999999999999999999999999999999999 99999999999999999999999999999999999987654
No 74
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=99.56 E-value=1.2e-14 Score=124.85 Aligned_cols=74 Identities=38% Similarity=0.618 Sum_probs=71.2
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCChhhhccCCCCEEEEEEecC
Q 017906 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKS 77 (364)
Q Consensus 1 MkI~VKtl~gk~~~ieV~~s~TV~dLK~kI~~~~g~~~ip~~~qkLif~GkiL~D~~tL~d~gIk~~s~I~v~v~k~ 77 (364)
|+|+||+++|+.+.++|++++||.+||++|+..+| +|+++|+|+|+|+.|+|+.+|++|+|+++++|+|+.+.+
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~g---ip~~~q~L~~~g~~L~d~~tL~~~~i~~~~~l~l~~~~~ 74 (152)
T 3b08_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 74 (152)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHC---CCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCT
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHHC---cChHHeEEEECCeECcCcccHHHhccCCCCeeEEEeecc
Confidence 89999999999999999999999999999999999 999999999999999999999999999999999998643
No 75
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=1.1e-14 Score=121.40 Aligned_cols=74 Identities=24% Similarity=0.282 Sum_probs=67.7
Q ss_pred EEEEE-eCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCChhhhccCCCCEEEEEEecCC
Q 017906 2 KVFVK-TLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSK 78 (364)
Q Consensus 2 kI~VK-tl~gk~~~ieV~~s~TV~dLK~kI~~~~g~~~ip~~~qkLif~GkiL~D~~tL~d~gIk~~s~I~v~v~k~k 78 (364)
.|+|+ ...++.|.++++++.||.+||++|+...+ +|++.|+|||+||+|+|+.+|++|||++|.+|||+++...
T Consensus 17 tvkv~l~~~~~k~tv~v~~d~TV~dLKe~ls~~~~---iP~e~qrLIy~GKiLKD~eTL~~~gIk~g~TIhLvi~s~~ 91 (118)
T 2daf_A 17 TVKVVLIPVGQEIVIPFKVDTILKYLKDHFSHLLG---IPHSVLQIRYSGKILKNNETLVQHGVKPQEIVQVEIFSTN 91 (118)
T ss_dssp EEEEEETTTCCEEEEEECSSSCSHHHHHHHHHHHT---CCTTTEEEEETTEEECSSCCHHHHSCCSSCEEEEEEEESC
T ss_pred EEEEEEcCCCcEEEEEeCCCCcHHHHHHHHHhhhC---CChHHEEEEECCeEcCCcchHHHcCCCCCCEEEEEEecCC
Confidence 45555 55688999999999999999999999999 9999999999999999999999999999999999987643
No 76
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=99.55 E-value=1.7e-14 Score=124.02 Aligned_cols=75 Identities=37% Similarity=0.605 Sum_probs=71.9
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCChhhhccCCCCEEEEEEecCC
Q 017906 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSK 78 (364)
Q Consensus 1 MkI~VKtl~gk~~~ieV~~s~TV~dLK~kI~~~~g~~~ip~~~qkLif~GkiL~D~~tL~d~gIk~~s~I~v~v~k~k 78 (364)
|+|+||+++|+.|.++|++++||.+||++|+...| +|+++|+|+|+|+.|+|+++|++|+|+++++|+|+++.+.
T Consensus 77 ~~i~Vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~g---i~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~G 151 (152)
T 3b08_A 77 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 151 (152)
T ss_dssp EEEEEEESSSCEEEEEECTTCBHHHHHHHHHHHHC---CCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCC
T ss_pred cceeeeecCCCEEEEEeCCCCcHHHHHHHHHHHhC---cChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEecCC
Confidence 68999999999999999999999999999999999 9999999999999999999999999999999999998753
No 77
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=99.55 E-value=8.2e-15 Score=129.78 Aligned_cols=75 Identities=37% Similarity=0.605 Sum_probs=69.4
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCChhhhccCCCCEEEEEEecCC
Q 017906 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSK 78 (364)
Q Consensus 1 MkI~VKtl~gk~~~ieV~~s~TV~dLK~kI~~~~g~~~ip~~~qkLif~GkiL~D~~tL~d~gIk~~s~I~v~v~k~k 78 (364)
|.|+||+++|+++.++|++++||.+||++|+.++| +|+++|+|+|+|+.|+|+++|.+|+|+++++|||+++.+.
T Consensus 97 ~~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~g---ip~~~q~L~~~g~~L~D~~tL~~y~i~~g~tl~l~~rlrg 171 (172)
T 3u30_A 97 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 171 (172)
T ss_dssp EEEEEEESSCCEEEEEECTTCBHHHHHHHHHHHHC---CCGGGCCEEETTEECCTTSBSGGGTCCTTCEEEECC----
T ss_pred ccceeecccCcceeEEecCCCCHHHHHHHHHHHhC---CCceeEEEEECCccCCCCCcHHHhCCCCCCEEEEEEecCC
Confidence 57999999999999999999999999999999999 9999999999999999999999999999999999988653
No 78
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=99.54 E-value=2e-14 Score=119.69 Aligned_cols=76 Identities=24% Similarity=0.338 Sum_probs=69.6
Q ss_pred CEEEEEeC----------CCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCChhhhccCCCCEE
Q 017906 1 MKVFVKTL----------KGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFV 70 (364)
Q Consensus 1 MkI~VKtl----------~gk~~~ieV~~s~TV~dLK~kI~~~~g~~~ip~~~qkLif~GkiL~D~~tL~d~gIk~~s~I 70 (364)
++|+|+.. +|+++.|+|++++||.+||.+|+...| +++++|+|+|+|+.|+|+.+|++|+|+++++|
T Consensus 26 i~l~V~~p~~~~~~~~~L~G~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~QrL~~~Gk~L~D~~tL~~y~i~~g~~i 102 (115)
T 1we7_A 26 VSIKVQVPNMQDKTEWKLNGQGLVFTLPLTDQVSVIKVKIHEATG---MPAGKQKLQYEGIFIKDSNSLAYYNMASGAVI 102 (115)
T ss_dssp EEEEEEECCCSSSCSSCCSSEEEEEEECSCSBTHHHHHHHHHHSS---CCTTTEEEEETTEEECTTSBHHHHTCCSSCEE
T ss_pred EEEEEEcCCCccccccccCCeEEEEEECCCCCHHHHHHHHHHHHC---CChHHEEEEECCEECCCCCCHHHCCCCCCCEE
Confidence 35777764 478999999999999999999999999 99999999999999999999999999999999
Q ss_pred EEEEecCCC
Q 017906 71 VVMLTKSKV 79 (364)
Q Consensus 71 ~v~v~k~k~ 79 (364)
||+++.+..
T Consensus 103 ~lv~rl~GG 111 (115)
T 1we7_A 103 HLALKERSG 111 (115)
T ss_dssp EEEECCCSC
T ss_pred EEEEEcCCC
Confidence 999987754
No 79
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=99.53 E-value=1.1e-15 Score=133.89 Aligned_cols=76 Identities=36% Similarity=0.555 Sum_probs=0.0
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCChhhhccCCCCEEEEEEecCCC
Q 017906 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKV 79 (364)
Q Consensus 1 MkI~VKtl~gk~~~ieV~~s~TV~dLK~kI~~~~g~~~ip~~~qkLif~GkiL~D~~tL~d~gIk~~s~I~v~v~k~k~ 79 (364)
|+|+||+++|++|.|+|++++||.+||.+|+...| +|+++|+|+|+|+.|+|+.+|++|+|+++++|+|+++.+..
T Consensus 1 MqI~VK~l~G~~~~l~V~~~~TV~~LK~~I~~~~g---ip~~~QrLi~~Gk~L~D~~tL~dygI~~gstL~Lvlrl~GG 76 (152)
T 3u5c_f 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76 (152)
T ss_dssp -------------------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHhC---CCHHHEEEEECCEEccccCcHHHcCCCCCCEEEEEeeccCC
Confidence 89999999999999999999999999999999999 99999999999999999999999999999999999987654
No 80
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.52 E-value=9e-15 Score=116.59 Aligned_cols=69 Identities=20% Similarity=0.265 Sum_probs=63.5
Q ss_pred CEEEEEeCCCcEE--EE-EeCCCCcHHHHHHHHHHH-hCCCCCCCCCeEEEeC--CeecCCCCChhhhccCCCCEEEE
Q 017906 1 MKVFVKTLKGTHF--EI-EVKPEDKVSDVKKNIETV-QGSDVYPASQQMLIHQ--GKVLKDVTTLEENKVAENSFVVV 72 (364)
Q Consensus 1 MkI~VKtl~gk~~--~i-eV~~s~TV~dLK~kI~~~-~g~~~ip~~~qkLif~--GkiL~D~~tL~d~gIk~~s~I~v 72 (364)
|+|+||+++|+.+ .| +|++++||.+||++|++. .| +++++|||+|. ||+|+|+++|++|+|+++++|||
T Consensus 11 M~I~Vk~~~g~~~~~~l~~v~~~~TV~~lK~~I~~~~~~---i~~~~QrL~~~~~Gk~L~D~~tL~~y~i~~~stl~~ 85 (88)
T 2dzj_A 11 YEVEILDAKTREKLCFLDKVEPHATIAEIKNLFTKTHPQ---WYPARQSLRLDPKGKSLKDEDVLQKLPVGTTATLYF 85 (88)
T ss_dssp EEEEEEESSSCCCCEEEEEECSSCBHHHHHHHHHHHCSS---SCTTTCCEESSTTSCCCCTTCBTTTSSCCSEEEEEE
T ss_pred EEEEEECCCCCEEeeEEeEcCCCCcHHHHHHHHHHHhcC---CChHHeEEEecCCCcCcCCCCCHHHcCCCCCCEEEE
Confidence 7899999998775 58 999999999999999995 67 99999999976 99999999999999999999876
No 81
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.50 E-value=2.6e-14 Score=116.71 Aligned_cols=71 Identities=20% Similarity=0.314 Sum_probs=65.2
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEe--CCeecCCCCChhhhccCCCCEEEEEEe
Q 017906 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIH--QGKVLKDVTTLEENKVAENSFVVVMLT 75 (364)
Q Consensus 1 MkI~VKtl~gk~~~ieV~~s~TV~dLK~kI~~~~g~~~ip~~~qkLif--~GkiL~D~~tL~d~gIk~~s~I~v~v~ 75 (364)
|.+++++++|++|.|+|++++||.+||.+|++++| +|+++|||+| .|+ |+|+.+|++|+|+.+++|||++.
T Consensus 9 m~~~~vk~~Gk~~~v~v~~~~TV~~LK~~I~~~tg---Ipp~~QkLi~~~~gk-L~D~~tLs~~~I~~gstL~lvl~ 81 (100)
T 2dzm_A 9 MLDFRVEYRDRNVDVVLEDTCTVGEIKQILENELQ---IPVSKMLLKGWKTGD-VEDSTVLKSLHLPKNNSLYVLTP 81 (100)
T ss_dssp EEEEEEECSSCEEEEEEETTSBHHHHHHHHHHHHC---CCTTTCCEECCSSSC-CCTTSBHHHHCCCSEEEEEECCS
T ss_pred eEEEEEEeCCeEEEEEECCCCcHHHHHHHHHHHHC---CChhHeEEEccCCCC-CCCcCCHHHcCCCCCCEEEEEec
Confidence 56778889999999999999999999999999999 9999999996 565 99999999999999999998764
No 82
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=99.46 E-value=1e-13 Score=133.84 Aligned_cols=74 Identities=38% Similarity=0.618 Sum_probs=69.5
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCChhhhccCCCCEEEEEEecC
Q 017906 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKS 77 (364)
Q Consensus 1 MkI~VKtl~gk~~~ieV~~s~TV~dLK~kI~~~~g~~~ip~~~qkLif~GkiL~D~~tL~d~gIk~~s~I~v~v~k~ 77 (364)
|+|+||+++|+.+.|+|++++||.+||++|+.+.| +++++|||+|+||+|+|+++|++|+|+++++|+|+++.+
T Consensus 234 MqI~VKtl~Gk~~~leV~~s~TV~dLK~kI~~~~G---Ip~~~QRLi~~Gk~L~D~~TLsdygI~~gstL~LvlRLr 307 (307)
T 3ai5_A 234 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 307 (307)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHC---CCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEEC---
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHC---cChHHEEEEeCCeecCCCCCHHHcCCCCCCEEEEEEeCC
Confidence 78999999999999999999999999999999999 999999999999999999999999999999999998753
No 83
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=99.42 E-value=1.5e-13 Score=109.15 Aligned_cols=73 Identities=15% Similarity=0.070 Sum_probs=63.9
Q ss_pred EEEEE--eCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEe-------CCeecCCCCChhhhccCCCCEEEE
Q 017906 2 KVFVK--TLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIH-------QGKVLKDVTTLEENKVAENSFVVV 72 (364)
Q Consensus 2 kI~VK--tl~gk~~~ieV~~s~TV~dLK~kI~~~~g~~~ip~~~qkLif-------~GkiL~D~~tL~d~gIk~~s~I~v 72 (364)
+|.|. ..+.+.+++.+++++||.+||.+|+.++| +|+++|||+| .|+.|+|+++|++|||++|++|||
T Consensus 4 ~v~iths~~~~~~~E~r~~~s~TI~~lK~ki~~~~G---ip~~~QrLi~~~~~~~~~g~~l~d~~tL~~Y~i~~g~~ihl 80 (86)
T 4b6w_A 4 KVSLTHSASRMRVPEKRYGLAQTIESIKENVFTHFA---TPPEYMQLQLIDDRGITIEKNMANDKQLGYYQCRDEFVIHV 80 (86)
T ss_dssp EEEEEETTCSCCEEEEEEETTSBHHHHHHHHHTTSC---CCGGGEEEEEECTTSCEEESSCCTTSBGGGGTCCTTCEEEE
T ss_pred EEEEEEcCCCCeEEEEEcCccCcHHHHHHHHHHHHC---CCHHHEEEEEecCCCCceeeEcCCCCCHHHCCCCCCCEEEE
Confidence 34454 34556788999999999999999999999 9999999997 488999999999999999999999
Q ss_pred EEecC
Q 017906 73 MLTKS 77 (364)
Q Consensus 73 ~v~k~ 77 (364)
+-+.|
T Consensus 81 vd~~P 85 (86)
T 4b6w_A 81 VDLQP 85 (86)
T ss_dssp EECCC
T ss_pred EeCCC
Confidence 97654
No 84
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.42 E-value=2.2e-13 Score=112.19 Aligned_cols=71 Identities=20% Similarity=0.234 Sum_probs=65.4
Q ss_pred CEEEEEeCCCcEEEEEeC-CCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCe-----------e----cCCCCChhhhcc
Q 017906 1 MKVFVKTLKGTHFEIEVK-PEDKVSDVKKNIETVQGSDVYPASQQMLIHQGK-----------V----LKDVTTLEENKV 64 (364)
Q Consensus 1 MkI~VKtl~gk~~~ieV~-~s~TV~dLK~kI~~~~g~~~ip~~~qkLif~Gk-----------i----L~D~~tL~d~gI 64 (364)
|+|+||+.+|+. .|+|+ +++||.+||++|+.+++ ++++.|+|+|.|+ . ++|+++|++|||
T Consensus 8 M~irvrs~~G~~-~v~v~~~~~Tv~~LK~kI~~~~g---ip~~~QrL~~~~~~~~~k~~~~~~~l~~~l~d~~tL~~~gi 83 (107)
T 1wf9_A 8 TMLRVRSRDGLE-RVSVDGPHITVSQLKTLIQDQLQ---IPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSLNL 83 (107)
T ss_dssp EEEEEECSSCEE-EEEECCTTSBHHHHHHHHHHHSC---CCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGGTCC
T ss_pred EEEEEECCCCCE-EEEECCCCCcHHHHHHHHHHHhC---cCcccCEEEECCccccccCccccccccccCCCCCCHHHCCC
Confidence 789999999965 79999 99999999999999999 9999999999998 4 588999999999
Q ss_pred CCCCEEEEEEe
Q 017906 65 AENSFVVVMLT 75 (364)
Q Consensus 65 k~~s~I~v~v~ 75 (364)
++|++|||...
T Consensus 84 ~~G~~L~l~~~ 94 (107)
T 1wf9_A 84 AHGSMVYLAYE 94 (107)
T ss_dssp CTTCEEECCCS
T ss_pred CCCCEEEEEeC
Confidence 99999998765
No 85
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=99.42 E-value=5.9e-13 Score=107.59 Aligned_cols=70 Identities=17% Similarity=0.195 Sum_probs=62.4
Q ss_pred CEEEEEeCCCc--EEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeC--Ce---ec-CCCCChhhhccCCCCEEEE
Q 017906 1 MKVFVKTLKGT--HFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQ--GK---VL-KDVTTLEENKVAENSFVVV 72 (364)
Q Consensus 1 MkI~VKtl~gk--~~~ieV~~s~TV~dLK~kI~~~~g~~~ip~~~qkLif~--Gk---iL-~D~~tL~d~gIk~~s~I~v 72 (364)
++|+|+...++ .++++|++++||.+||++|+.++| +|+++|||+|. |+ .| +|+++|++|+|++|++|+|
T Consensus 16 v~l~It~s~~~~~~~~~~v~~~~TV~~LK~kI~~~~G---iP~~~QrL~~~~~g~~~~~L~~D~~tL~~Y~i~~gstihl 92 (95)
T 2kjr_A 16 IKVNVSNSHNDAVAFEVKLAKDLTVAQLKTKLEILTG---GCAGTMKVQVFKGDTCVSTMDNNDAQLGYYANSDGLRLHV 92 (95)
T ss_dssp EEEEEEESSCSCEEEEEEEETTCBHHHHHHHHHHHHC---SCTTTEEEEEEETTEEEEECCCTTSBHHHHCCSSSCEEEE
T ss_pred EEEEEEECCCCceEEEEEeCccCHHHHHHHHHHHHHC---cCHHHeEEEEecCCcccceeCCCCCCHhHCCcCCCCEEEE
Confidence 36788876654 789999999999999999999999 99999999998 55 34 8999999999999999998
Q ss_pred E
Q 017906 73 M 73 (364)
Q Consensus 73 ~ 73 (364)
+
T Consensus 93 v 93 (95)
T 2kjr_A 93 V 93 (95)
T ss_dssp E
T ss_pred E
Confidence 6
No 86
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.38 E-value=1.1e-12 Score=106.42 Aligned_cols=71 Identities=11% Similarity=0.018 Sum_probs=62.4
Q ss_pred EEEEEeCCC--cEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCC---ee----cCCCCChhhhccCCCCEEEE
Q 017906 2 KVFVKTLKG--THFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQG---KV----LKDVTTLEENKVAENSFVVV 72 (364)
Q Consensus 2 kI~VKtl~g--k~~~ieV~~s~TV~dLK~kI~~~~g~~~ip~~~qkLif~G---ki----L~D~~tL~d~gIk~~s~I~v 72 (364)
+|+|+.... +.++++|++++||.+||.+|+.++| +|+++|||+|.| +. ++|+++|++|+|++|++|+|
T Consensus 16 ~l~It~s~~~~~~~e~~v~~~~TV~~LK~kIe~~~G---ip~~~QrLi~~g~~g~~~~~L~~D~~tL~~Y~I~~g~~Ihl 92 (97)
T 2kj6_A 16 HLHITHANLKSFSADARFSPQMSVEAVKEKLWKKCG---TSVNSMALELYDDSGSKVAVLSDDSRPLGFFSPFDGFRLHI 92 (97)
T ss_dssp EEEEEETTSSCCCEEEEECTTCCHHHHHHHHHHHHC---CCTTSEEEEEECSSSCBCCCSSGGGSCHHHHCCCSCCEEEE
T ss_pred EEEEEECCCCceEEEEEeCCCChHHHHHHHHHHHHC---cCHHHeEEEEecCCCcccceecCCcCCHHHCCCCCCCEEEE
Confidence 567776443 4789999999999999999999999 999999999988 33 48899999999999999999
Q ss_pred EEe
Q 017906 73 MLT 75 (364)
Q Consensus 73 ~v~ 75 (364)
+-.
T Consensus 93 vd~ 95 (97)
T 2kj6_A 93 IDL 95 (97)
T ss_dssp EEC
T ss_pred EeC
Confidence 864
No 87
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=99.38 E-value=4.2e-14 Score=127.56 Aligned_cols=71 Identities=21% Similarity=0.257 Sum_probs=0.0
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCChhhhccCCCCEEEEEEecCCC
Q 017906 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKV 79 (364)
Q Consensus 1 MkI~VKtl~gk~~~ieV~~s~TV~dLK~kI~~~~g~~~ip~~~qkLif~GkiL~D~~tL~d~gIk~~s~I~v~v~k~k~ 79 (364)
|+|+||+++|++|.|+|++++||.+||.+|+...| +|+++|+|||+|++|+|+.+|+ ++++|||+++.+..
T Consensus 1 MqI~VKtL~GktitLeV~~sdTV~~LK~kI~~keG---IP~~qQRLIf~GK~LeD~~TLs-----~~STLhLvlRLrGG 71 (189)
T 2xzm_9 1 MQVQVKTLEGETKIYTLEQGTSVLDLKSQISQDMG---FEIDMMTLVNNGFIAPNTELVT-----DDVTYYLSLKLLGG 71 (189)
T ss_dssp -------------------------------------------------------------------------------
T ss_pred CEEEEEcCCCCEEEEEECCcChHHHHHHHHHHHhC---cChhHEEEEecCeECCCCCccc-----CCCEEEEEEecCCC
Confidence 89999999999999999999999999999999999 9999999999999999999998 88999999987643
No 88
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.36 E-value=1.4e-12 Score=104.87 Aligned_cols=73 Identities=22% Similarity=0.209 Sum_probs=63.6
Q ss_pred CEEEEEeCCCc-EEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCC---ee----cCCCCChhhhccCCCCEEEE
Q 017906 1 MKVFVKTLKGT-HFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQG---KV----LKDVTTLEENKVAENSFVVV 72 (364)
Q Consensus 1 MkI~VKtl~gk-~~~ieV~~s~TV~dLK~kI~~~~g~~~ip~~~qkLif~G---ki----L~D~~tL~d~gIk~~s~I~v 72 (364)
++|+|+..... .++++|++++||.+||.+|+..+| +|+++|||+|.| +. |+|+++|.+|||+++++|||
T Consensus 8 v~l~I~~~~~~~~~~~~v~~~~TV~~lK~ki~~~~g---ip~~~qrL~~~~~~g~~~~~l~~D~~tL~~y~i~~g~~l~v 84 (95)
T 1v6e_A 8 VMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVG---SPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIHV 84 (95)
T ss_dssp EEEEEEETTSSSCEEEEECTTSBHHHHHHHHHHHTC---SCTTTCBCEEECSSSCEEEECCCSSSBTTSSSCCTTCEEEE
T ss_pred EEEEEEECCCCeeEEEEcCccCHHHHHHHHHHHHHC---CCHHHeEEEEeCCCCccccccCCCcCCHhHCCCCCCCEEEE
Confidence 36788876553 689999999999999999999999 999999999986 54 58999999999999999998
Q ss_pred EEec
Q 017906 73 MLTK 76 (364)
Q Consensus 73 ~v~k 76 (364)
+...
T Consensus 85 ~d~~ 88 (95)
T 1v6e_A 85 IDHS 88 (95)
T ss_dssp BCCS
T ss_pred EECC
Confidence 7643
No 89
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=99.35 E-value=1e-12 Score=90.93 Aligned_cols=40 Identities=23% Similarity=0.327 Sum_probs=38.2
Q ss_pred hHHHHHHHHHcCCCCCCHHHHHHHHHHHcCChHHHHHHHHhCC
Q 017906 172 LEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGI 214 (364)
Q Consensus 172 ~e~~V~~i~~MG~~~f~r~qv~~ALrAafnNpdRAvEyL~~GI 214 (364)
.++.|++|++|| |+|++|++||++++||+++|++||++||
T Consensus 4 ~e~~i~~L~~MG---F~~~~a~~AL~~~~~n~e~A~~~L~~~~ 43 (43)
T 2g3q_A 4 KSLAVEELSGMG---FTEEEAHNALEKCNWDLEAATNFLLDSA 43 (43)
T ss_dssp HHHHHHHHHTTT---SCHHHHHHHHHHHTSCHHHHHHHHHTCC
T ss_pred CHHHHHHHHHcC---CCHHHHHHHHHHhCcCHHHHHHHHHcCC
Confidence 478999999999 9999999999999999999999999986
No 90
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=99.35 E-value=1.3e-12 Score=103.10 Aligned_cols=71 Identities=17% Similarity=0.304 Sum_probs=63.5
Q ss_pred CEEEEEeCCCcEEEEE-eCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeC--CeecC---CCCChhhhccCCCCEEEEEE
Q 017906 1 MKVFVKTLKGTHFEIE-VKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQ--GKVLK---DVTTLEENKVAENSFVVVML 74 (364)
Q Consensus 1 MkI~VKtl~gk~~~ie-V~~s~TV~dLK~kI~~~~g~~~ip~~~qkLif~--GkiL~---D~~tL~d~gIk~~s~I~v~v 74 (364)
|+|+||+.+|+. .|+ |++++||.+||.+|+++.| +++++|+|+|+ +|.|+ |+++|++|||++|++|+|..
T Consensus 1 m~i~vr~~~G~~-~v~~l~~~~Tv~~Lk~~I~~~~g---i~~~~qrL~~~~p~k~l~l~~~~~tL~~~gl~~g~~l~v~~ 76 (86)
T 2kzr_A 1 WRVRCKAKGGTH-LLQGLSSRTRLRELQGQIAAITG---IAPGSQRILVGYPPECLDLSDRDITLGDLPIQSGDMLIVEE 76 (86)
T ss_dssp CCEEEEETTEEE-EECSCCTTCBHHHHHHHHHHHTC---CCTTTCCCEESSCCCCCCCCCSSCBTTTSSCCTTCEEECCC
T ss_pred CEEEEEcCCCCE-EeeecCCCCCHHHHHHHHHHHhC---CCccceEEEeCCCCcccccCCCCCCHHHcCCCCCCEEEEEe
Confidence 899999999954 587 9999999999999999999 99999999987 48874 68899999999999998865
Q ss_pred e
Q 017906 75 T 75 (364)
Q Consensus 75 ~ 75 (364)
.
T Consensus 77 ~ 77 (86)
T 2kzr_A 77 D 77 (86)
T ss_dssp C
T ss_pred C
Confidence 4
No 91
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=99.34 E-value=1.2e-12 Score=100.74 Aligned_cols=46 Identities=17% Similarity=0.340 Sum_probs=42.9
Q ss_pred CcchHHHHHHHHHcCCCCC-CHHHHHHHHHHHcCChHHHHHHHHhCCCCC
Q 017906 169 GSNLEATVQQILDMGGGSW-DRETVIRALRAAYNNPERAVEYLYSGIPEQ 217 (364)
Q Consensus 169 g~~~e~~V~~i~~MG~~~f-~r~qv~~ALrAafnNpdRAvEyL~~GIP~~ 217 (364)
...|++.|++|++|| | +|+.+++||+++++|++||||||++|||+.
T Consensus 26 e~~ye~qi~qL~eMG---F~dr~~~~~AL~~t~Gnve~Ave~L~~~~~~~ 72 (74)
T 1vej_A 26 EGRYQQELEELKALG---FANRDANLQALVATDGDIHAAIEMLLGASGPS 72 (74)
T ss_dssp TTTSHHHHHHHHHHT---CCCHHHHHHHHHHTTSCHHHHHHHHHTCCCCC
T ss_pred hHHHHHHHHHHHHcC---CCcHHHHHHHHHHhCCCHHHHHHHHHhCCCCC
Confidence 456999999999999 9 899999999999999999999999998864
No 92
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=99.34 E-value=1.2e-12 Score=100.69 Aligned_cols=44 Identities=36% Similarity=0.389 Sum_probs=40.8
Q ss_pred CcchHHHHHHHHHcCCCCCCHHHHHHHHHHHcCChHHHHHHHHhCCC
Q 017906 169 GSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 215 (364)
Q Consensus 169 g~~~e~~V~~i~~MG~~~f~r~qv~~ALrAafnNpdRAvEyL~~GIP 215 (364)
...+++.|++||+|| |+|++|++|||+++||+|||||||++|+.
T Consensus 26 ~~~~ee~I~~L~eMG---F~r~~a~~AL~~~~~nve~Ave~Ll~~~~ 69 (73)
T 1vg5_A 26 VAASEEQIQKLVAMG---FDRTQVEVALAAADDDLTVAVEILMSQSG 69 (73)
T ss_dssp SCCCHHHHHHHHTTT---CCHHHHHHHHHHHTSCHHHHHHHHHTCSC
T ss_pred CcccHHHHHHHHHcC---CCHHHHHHHHHHhCCCHHHHHHHHHHCCC
Confidence 345899999999999 99999999999999999999999999944
No 93
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.33 E-value=3.1e-12 Score=103.16 Aligned_cols=76 Identities=14% Similarity=0.206 Sum_probs=72.3
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCChhhhccCCCCEEEEEEecCCC
Q 017906 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKV 79 (364)
Q Consensus 1 MkI~VKtl~gk~~~ieV~~s~TV~dLK~kI~~~~g~~~ip~~~qkLif~GkiL~D~~tL~d~gIk~~s~I~v~v~k~k~ 79 (364)
|+|+||+.+|+.+.|.|.+++++..||++++++.| ++++.+||+|.|+.|.++.|+++|+|.++++|+|+++.+..
T Consensus 8 i~ikVk~~~g~~i~~~v~~~t~l~kl~~~y~~~~g---i~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~~~GG 83 (94)
T 2io1_B 8 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQG---LSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 83 (94)
T ss_dssp EEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHT---CCGGGEEEEETTEECCTTCCTTTTTCCTTCEEEEEECCEES
T ss_pred EEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHhC---CCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCC
Confidence 68999999999999999999999999999999999 99999999999999999999999999999999999987654
No 94
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=99.32 E-value=1.6e-12 Score=91.37 Aligned_cols=40 Identities=30% Similarity=0.473 Sum_probs=38.0
Q ss_pred chHHHHHHHHHcCCCCC-CHHHHHHHHHHHcCChHHHHHHHHhC
Q 017906 171 NLEATVQQILDMGGGSW-DRETVIRALRAAYNNPERAVEYLYSG 213 (364)
Q Consensus 171 ~~e~~V~~i~~MG~~~f-~r~qv~~ALrAafnNpdRAvEyL~~G 213 (364)
.|+..|++|++|| | +|+.+++||+++++|++||||||++|
T Consensus 6 ~~~~~i~~L~~MG---F~d~~~~~~AL~~~~gnv~~Ave~L~~~ 46 (46)
T 2bwb_A 6 RYEHQLRQLNDMG---FFDFDRNVAALRRSGGSVQGALDSLLNG 46 (46)
T ss_dssp HTHHHHHHHHHTT---CCCHHHHHHHHHHHTTCHHHHHHHHHCC
T ss_pred HHHHHHHHHHHcC---CCcHHHHHHHHHHhCCCHHHHHHHHHcc
Confidence 5899999999999 9 79999999999999999999999986
No 95
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=99.28 E-value=3.4e-12 Score=92.32 Aligned_cols=43 Identities=26% Similarity=0.375 Sum_probs=40.7
Q ss_pred cchHHHHHHHHHcCCCCC-CHHHHHHHHHHHcCChHHHHHHHHhCCC
Q 017906 170 SNLEATVQQILDMGGGSW-DRETVIRALRAAYNNPERAVEYLYSGIP 215 (364)
Q Consensus 170 ~~~e~~V~~i~~MG~~~f-~r~qv~~ALrAafnNpdRAvEyL~~GIP 215 (364)
..|++.|++|++|| | +|+.|++||++++||++||||||++|++
T Consensus 9 ~~~~~~l~~L~~MG---F~~~~~~~~AL~~t~gnve~Ave~L~~~~~ 52 (53)
T 2knz_A 9 VRFQQQLEQLNSMG---FINREANLQALIATGGDINAAIERLLGSQL 52 (53)
T ss_dssp HHHHHHHHHHHTTT---CCCHHHHHHHHHHHTSCHHHHHHHHHHCCC
T ss_pred hHHHHHHHHHHHcC---CCCHHHHHHHHHHhCCCHHHHHHHHHHcCC
Confidence 45899999999999 9 9999999999999999999999999865
No 96
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=99.28 E-value=1.4e-11 Score=94.25 Aligned_cols=71 Identities=15% Similarity=0.227 Sum_probs=68.1
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCChhhhccCCCCEEEEEE
Q 017906 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVML 74 (364)
Q Consensus 1 MkI~VKtl~gk~~~ieV~~s~TV~dLK~kI~~~~g~~~ip~~~qkLif~GkiL~D~~tL~d~gIk~~s~I~v~v 74 (364)
|+|+||+.+|+.+.+.|..++++..|+++++++.| +++..++|+|.|+.|.++.|.++|++.+|++|+|++
T Consensus 2 i~lkV~~~~g~~v~~~v~~~t~l~kl~~~y~~~~g---i~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~~ 72 (72)
T 1wm3_A 2 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQG---LSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQ 72 (72)
T ss_dssp EEEEEECTTSCEEEEEECTTSCTHHHHHHHHHHHT---CCTTTCEEEETTEECCTTCCTTTTTCCTTEEEEEEC
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhC---CCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEC
Confidence 68999999999999999999999999999999999 999999999999999999999999999999999873
No 97
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=99.28 E-value=3e-12 Score=124.55 Aligned_cols=72 Identities=18% Similarity=0.285 Sum_probs=66.2
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEE---eCCeecCCCCChhhhccCCCCEEEEEEec
Q 017906 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLI---HQGKVLKDVTTLEENKVAENSFVVVMLTK 76 (364)
Q Consensus 1 MkI~VKtl~gk~~~ieV~~s~TV~dLK~kI~~~~g~~~ip~~~qkLi---f~GkiL~D~~tL~d~gIk~~s~I~v~v~k 76 (364)
|+|+|| ++|++|.|+|++++||.+||++|++++| +|+++|||| |+||+|+|+.+|++|+|++|++|+||.+.
T Consensus 6 i~i~Vk-~~g~~~~v~v~~~~Tv~~lK~~I~~~tg---Vpp~~QkLi~~k~~Gk~l~D~~~L~~~~ik~g~~l~L~gs~ 80 (320)
T 3shq_A 6 VVVIVK-WSGKEYPVDLTDQDTVEVLRHEIFRKTQ---VRPERQKLLNLKYKGKTAADNVKISALELKPNFKLMMVGST 80 (320)
T ss_dssp EEEEEE-ETTEEEEEEEETTSBHHHHHHHHHHHHC---CCGGGCEETTCBSSSSBCCTTSBTTSSCCC--CEEEEECCC
T ss_pred EEEEEE-ECCEEEEEEECCCCcHHHHHHHHHHHHC---cCHHHeEEeecccCCcccCccccHHHcCCCCCCEEEEEccc
Confidence 578999 6899999999999999999999999999 999999999 89999999999999999999999999654
No 98
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=99.26 E-value=1.2e-11 Score=104.12 Aligned_cols=74 Identities=14% Similarity=0.130 Sum_probs=64.3
Q ss_pred CEEEEEeCCCc-EEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCC---ee----cCCCCChhhhccCCCCEEEE
Q 017906 1 MKVFVKTLKGT-HFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQG---KV----LKDVTTLEENKVAENSFVVV 72 (364)
Q Consensus 1 MkI~VKtl~gk-~~~ieV~~s~TV~dLK~kI~~~~g~~~ip~~~qkLif~G---ki----L~D~~tL~d~gIk~~s~I~v 72 (364)
|+|+|+...+. .++++|++++||.+||.+|+..+| +|+++|||+|.| +. ++|+++|.+|||.+|++|||
T Consensus 7 v~l~V~~~~~~~~~e~~v~~~~TV~~lK~ki~~~~G---ip~~~qrL~~~g~~~~~~~~l~~D~~tL~~y~i~~g~~ihv 83 (122)
T 1t0y_A 7 YDLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVG---TTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRIHA 83 (122)
T ss_dssp EEEEEEESSCCSCEEEEEETTSBHHHHHHHHHHHHC---CCTTTEEEEEECSSSSEEEECCCCSSBTTTTTCCSSEEEEE
T ss_pred EEEEEEECCCCccEEEEeCCCCcHHHHHHHHHHHhC---CCHHHeEEEEecCCCccccccCCCcCCHHHCCCCCCCEEEE
Confidence 46788876553 688999999999999999999999 999999999987 43 48999999999999999999
Q ss_pred EEecC
Q 017906 73 MLTKS 77 (364)
Q Consensus 73 ~v~k~ 77 (364)
+...+
T Consensus 84 vd~~p 88 (122)
T 1t0y_A 84 VDVTG 88 (122)
T ss_dssp EECTT
T ss_pred EeCCC
Confidence 87543
No 99
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=99.26 E-value=1.9e-11 Score=97.96 Aligned_cols=75 Identities=15% Similarity=0.224 Sum_probs=71.3
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCChhhhccCCCCEEEEEEecCC
Q 017906 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSK 78 (364)
Q Consensus 1 MkI~VKtl~gk~~~ieV~~s~TV~dLK~kI~~~~g~~~ip~~~qkLif~GkiL~D~~tL~d~gIk~~s~I~v~v~k~k 78 (364)
|+|+||+.+|+.+.|.|.+++++..||++++++.| +++..+||+|.|+.|.++.|+++|++.++++|.|++....
T Consensus 6 i~ikVk~~~g~~v~~~vk~~t~l~kl~~~y~~~~g---i~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~q~g 80 (91)
T 2io0_B 6 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQG---LSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTG 80 (91)
T ss_dssp EEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHTT---CCSTTEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCCC
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhC---CCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccC
Confidence 57899999999999999999999999999999999 9999999999999999999999999999999999987654
No 100
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=99.25 E-value=7.3e-12 Score=98.36 Aligned_cols=44 Identities=27% Similarity=0.381 Sum_probs=41.0
Q ss_pred hHHHHHHHHHcCCCCCCHHHHHHHHHHHcCChHHHHHHHHh--C-CCCCC
Q 017906 172 LEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYS--G-IPEQT 218 (364)
Q Consensus 172 ~e~~V~~i~~MG~~~f~r~qv~~ALrAafnNpdRAvEyL~~--G-IP~~~ 218 (364)
.++.|++||+|| |+|++|++|||+++||++||+|||++ | ||+.+
T Consensus 29 ~ee~I~~Lv~MG---F~~~~A~~AL~~t~gdve~A~e~L~sh~~~ip~~~ 75 (83)
T 1veg_A 29 SQESINQLVYMG---FDTVVAEAALRVFGGNVQLAAQTLAHHGGSLPPDL 75 (83)
T ss_dssp CHHHHHHHHHHS---CCHHHHHHHHHHTTTCHHHHHHHHHHHTSSCCTTS
T ss_pred CHHHHHHHHHcC---CCHHHHHHHHHHcCCCHHHHHHHHHhCCCCCchhh
Confidence 588999999999 99999999999999999999999999 7 77654
No 101
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=99.24 E-value=1e-11 Score=89.45 Aligned_cols=42 Identities=26% Similarity=0.411 Sum_probs=39.6
Q ss_pred CcchHHHHHHHHHcCCCCC-CHHHHHHHHHHHcCChHHHHHHHHhC
Q 017906 169 GSNLEATVQQILDMGGGSW-DRETVIRALRAAYNNPERAVEYLYSG 213 (364)
Q Consensus 169 g~~~e~~V~~i~~MG~~~f-~r~qv~~ALrAafnNpdRAvEyL~~G 213 (364)
...|++.|++|++|| | +|+.|++||++++||++||||||++|
T Consensus 9 ~~~~~~~l~~L~~MG---F~~~~~~~~AL~~t~gn~e~A~e~L~~~ 51 (52)
T 2jy5_A 9 EVRFQQQLEQLSAMG---FLNREANLQALIATGGDINAAIERLLGS 51 (52)
T ss_dssp TTTTHHHHHHHHHTT---CCCHHHHHHHHHHHTTCHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHHcC---CCCHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence 356899999999999 9 99999999999999999999999976
No 102
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=99.24 E-value=4.2e-11 Score=93.29 Aligned_cols=70 Identities=13% Similarity=0.236 Sum_probs=67.1
Q ss_pred CEEEEEeCCCc-EEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCChhhhccCCCCEEEEE
Q 017906 1 MKVFVKTLKGT-HFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVM 73 (364)
Q Consensus 1 MkI~VKtl~gk-~~~ieV~~s~TV~dLK~kI~~~~g~~~ip~~~qkLif~GkiL~D~~tL~d~gIk~~s~I~v~ 73 (364)
|+|+|++.+|+ .+.|.|..++++..|+.+++++.| ++++.+||+|.|+.|.++.|+++|++.++++|+|+
T Consensus 8 i~ikV~~~~g~~~i~~~i~~~t~l~kl~~~y~~~~g---i~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~ 78 (79)
T 3a4r_A 8 LRLRVQGKEKHQMLEISLSPDSPLKVLMSHYEEAMG---LSGHKLSFFFDGTKLSGKELPADLGLESGDLIEVW 78 (79)
T ss_dssp EEEEEECSSTTCEEEEEECTTSCHHHHHHHHHHHHT---CTTCCCEEEETTEECCSCCCHHHHTCCTTCEEEEE
T ss_pred EEEEEEeCCCCEEEEEEECCCChHHHHHHHHHHHhC---CCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence 67999999996 899999999999999999999999 89999999999999999999999999999999986
No 103
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=99.21 E-value=4.4e-11 Score=96.09 Aligned_cols=74 Identities=15% Similarity=0.231 Sum_probs=69.6
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCChhhhccCCCCEEEEEEecC
Q 017906 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKS 77 (364)
Q Consensus 1 MkI~VKtl~gk~~~ieV~~s~TV~dLK~kI~~~~g~~~ip~~~qkLif~GkiL~D~~tL~d~gIk~~s~I~v~v~k~ 77 (364)
|+|+|++.+|+.+.|.|..++++..|+.+++++.| ++++.+||+|.|+.|.++.|+++|+|.++++|+|++...
T Consensus 18 i~ikV~~~~g~~i~~~v~~~t~l~kl~~~y~~~~g---i~~~~~rf~fdG~~l~~~~Tp~dl~medgD~Idv~~~q~ 91 (93)
T 2d07_B 18 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQG---LSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQT 91 (93)
T ss_dssp EEEEEECTTSCEEEEEEETTSCHHHHHHHHHHHHT---CCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECC-
T ss_pred EEEEEECCCCCEEEEEEccCCHHHHHHHHHHHHhC---CCccceEEEECCEEcCCCCCHHHcCCCCCCEEEEEeecc
Confidence 57899999999999999999999999999999999 899999999999999999999999999999999998754
No 104
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=99.20 E-value=1.6e-11 Score=91.83 Aligned_cols=42 Identities=29% Similarity=0.369 Sum_probs=39.3
Q ss_pred hHHHHHHHHHcCCCCCCHHHHHHHHHHHcCChHHHHHHHHhCCCC
Q 017906 172 LEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE 216 (364)
Q Consensus 172 ~e~~V~~i~~MG~~~f~r~qv~~ALrAafnNpdRAvEyL~~GIP~ 216 (364)
.++.|++|++|| |+|++|++|||+++||++||+|||+++..+
T Consensus 9 ~~~~I~~L~~MG---F~~~~a~~AL~~~~~nve~A~e~L~~~~~~ 50 (63)
T 1wji_A 9 DEKALKHITEMG---FSKEASRQALMDNGNNLEAALNVLLTSNKQ 50 (63)
T ss_dssp CHHHHHHHHTTT---CCHHHHHHHHHHTTSCHHHHHHHHHHHSSC
T ss_pred CHHHHHHHHHcC---CCHHHHHHHHHHhCCCHHHHHHHHHHCCCC
Confidence 588999999999 999999999999999999999999999543
No 105
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=99.19 E-value=1.5e-11 Score=90.44 Aligned_cols=42 Identities=29% Similarity=0.446 Sum_probs=39.5
Q ss_pred CcchHHHHHHHHHcCCCCC-CHHHHHHHHHHHcCChHHHHHHHHhC
Q 017906 169 GSNLEATVQQILDMGGGSW-DRETVIRALRAAYNNPERAVEYLYSG 213 (364)
Q Consensus 169 g~~~e~~V~~i~~MG~~~f-~r~qv~~ALrAafnNpdRAvEyL~~G 213 (364)
...|++.|++|++|| | +|+.+++||+++++|++||||||++|
T Consensus 14 e~~~~~qi~~L~~MG---F~d~~~~~~AL~~~~gnve~Ave~L~~~ 56 (58)
T 1wr1_B 14 EERYEHQLRQLNDMG---FFDFDRNVAALRRSGGSVQGALDSLLNG 56 (58)
T ss_dssp HHHTHHHHHHHHHHT---CCCHHHHHHHHHHHTSCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcC---CCcHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence 356899999999999 9 79999999999999999999999998
No 106
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.19 E-value=5.2e-11 Score=97.72 Aligned_cols=75 Identities=15% Similarity=0.229 Sum_probs=71.0
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCChhhhccCCCCEEEEEEecCC
Q 017906 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSK 78 (364)
Q Consensus 1 MkI~VKtl~gk~~~ieV~~s~TV~dLK~kI~~~~g~~~ip~~~qkLif~GkiL~D~~tL~d~gIk~~s~I~v~v~k~k 78 (364)
|+|+|++.+|+.+.|.|..++++..|+.+++++.| +++..+||+|.|+.|.++.|+.+|+|.++++|+|++....
T Consensus 25 I~IkVk~~~g~~i~~kVk~~t~l~kL~~~y~ek~g---i~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~q~G 99 (104)
T 1wz0_A 25 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQG---LSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTS 99 (104)
T ss_dssp EEEEEECSSSCEEEEEECTTSCHHHHHHHHHHHHT---CCTTTSCEESSSSBCCTTSCTTTTTCCTTEEEEECCCCCC
T ss_pred EEEEEECCCCCEEEEEEcCCChHHHHHHHHHHHhC---CCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccC
Confidence 57999999999999999999999999999999999 8999999999999999999999999999999999987654
No 107
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=99.19 E-value=2.1e-11 Score=91.88 Aligned_cols=45 Identities=18% Similarity=0.198 Sum_probs=41.6
Q ss_pred cchHHHHHHHHHcCCCCC-CHHHHHHHHHHHcCChHHHHHHHHhCCCCC
Q 017906 170 SNLEATVQQILDMGGGSW-DRETVIRALRAAYNNPERAVEYLYSGIPEQ 217 (364)
Q Consensus 170 ~~~e~~V~~i~~MG~~~f-~r~qv~~ALrAafnNpdRAvEyL~~GIP~~ 217 (364)
..|+..|++|++|| | +|+.+++|||++++|++||||||++++++.
T Consensus 17 ~~y~~ql~qL~~MG---F~d~~an~~AL~at~Gnve~Ave~L~~~~~~~ 62 (67)
T 2dna_A 17 VRFSKEMECLQAMG---FVNYNANLQALIATDGDTNAAIYKLKSSQGFS 62 (67)
T ss_dssp HHTHHHHHHHHHHT---CCCHHHHHHHHHHTTSCHHHHHHHHHHCCSSS
T ss_pred HHHHHHHHHHHHcC---CCcHHHHHHHHHHcCCCHHHHHHHHHhCCCcc
Confidence 45899999999999 9 888889999999999999999999998864
No 108
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.16 E-value=1.7e-11 Score=91.66 Aligned_cols=43 Identities=40% Similarity=0.677 Sum_probs=40.5
Q ss_pred hHHHHHHHHHcCCCCCCHHHHHHHHHHHcCChHHHHHHHHhCCCCC
Q 017906 172 LEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQ 217 (364)
Q Consensus 172 ~e~~V~~i~~MG~~~f~r~qv~~ALrAafnNpdRAvEyL~~GIP~~ 217 (364)
.++.|++||+|| |+|++|++|||+++||++||+|||+.++++.
T Consensus 9 ~~~~v~~L~~MG---F~~~~a~~AL~~t~~nve~A~e~L~~~~~d~ 51 (63)
T 2dak_A 9 PEDCVTTIVSMG---FSRDQALKALRATNNSLERAVDWIFSHIDDL 51 (63)
T ss_dssp CHHHHHHHHHHT---CCHHHHHHHHHHTTSCSHHHHHHHHHHHHSC
T ss_pred CHHHHHHHHHcC---CCHHHHHHHHHHcCCCHHHHHHHHHhCCCCc
Confidence 688999999999 9999999999999999999999999997753
No 109
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=99.14 E-value=8.1e-11 Score=97.52 Aligned_cols=75 Identities=15% Similarity=0.248 Sum_probs=70.9
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCChhhhccCCCCEEEEEEecCC
Q 017906 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSK 78 (364)
Q Consensus 1 MkI~VKtl~gk~~~ieV~~s~TV~dLK~kI~~~~g~~~ip~~~qkLif~GkiL~D~~tL~d~gIk~~s~I~v~v~k~k 78 (364)
|+|+|++.+|+.+.|.|..++++..||.+++++.| ++++.+||+|.|+.|.++.|+++|+|.++++|+|++....
T Consensus 27 I~IkVk~~~g~~i~fkVk~~t~l~kL~~ay~ek~g---i~~~~~rfiFdG~~L~~~~Tp~dl~mEDgD~Idv~~~q~G 101 (110)
T 2k8h_A 27 VAVKVVNADGAEMFFRIKSRTALKKLIDTYCKKQG---ISRNSVRFLFDGTPIDETKTPEELGMEDDDVIDAMVEQTG 101 (110)
T ss_dssp EEEEEEETTSCCEEEEECTTSSHHHHHHHHHHHHT---CCSSSCEEESSSCBCCSSSHHHHHHCSSEEEEEEECCCCC
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhC---CCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEcccC
Confidence 67999999999999999999999999999999999 9999999999999999999999999999999999987643
No 110
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=99.12 E-value=1.4e-10 Score=95.42 Aligned_cols=73 Identities=11% Similarity=0.157 Sum_probs=68.8
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCChhhhccCCCCEEEEEEecC
Q 017906 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKS 77 (364)
Q Consensus 1 MkI~VKtl~gk~~~ieV~~s~TV~dLK~kI~~~~g~~~ip~~~qkLif~GkiL~D~~tL~d~gIk~~s~I~v~v~k~ 77 (364)
|+|+|++ +|+.+.|.|..++++..|+.+++++.| +++..+||+|.|+.|.++.|.++|++.++++|.|++...
T Consensus 32 I~IkV~~-~g~~i~fkIk~tt~l~kL~~ay~ek~g---i~~~~~rF~FdG~rl~~~~Tp~dl~medgD~Idv~~~q~ 104 (106)
T 2eke_C 32 INLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQG---KEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQI 104 (106)
T ss_dssp EEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHT---CCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECC-
T ss_pred EEEEEec-CCcEEEEEeCCCCHHHHHHHHHHHHhC---CCcccEEEEECCeEcCCCCCHHHcCCCCCCEEEEEeecc
Confidence 5789999 999999999999999999999999999 889999999999999999999999999999999998754
No 111
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=99.11 E-value=7.1e-11 Score=90.88 Aligned_cols=41 Identities=20% Similarity=0.455 Sum_probs=38.5
Q ss_pred hHHHHHHHHHcCCCCCCHHHHHHHHHHHcCChHHHHHHHHhCCC
Q 017906 172 LEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 215 (364)
Q Consensus 172 ~e~~V~~i~~MG~~~f~r~qv~~ALrAafnNpdRAvEyL~~GIP 215 (364)
.++.|++|++|| |+|++|++|||+++||++||||||+++..
T Consensus 29 ~~~~v~~L~~MG---F~~~~a~~AL~~t~~nve~Ave~L~~~~~ 69 (73)
T 1wiv_A 29 DQSSVDTLLSFG---FAEDVARKALKASGGDIEKATDWVFNNSG 69 (73)
T ss_dssp CHHHHHHHHHHT---CCHHHHHHHHHHTTSCHHHHHHHHHHSCC
T ss_pred CHHHHHHHHHcC---CCHHHHHHHHHHhCCCHHHHHHHHHhCCC
Confidence 578999999999 99999999999999999999999999843
No 112
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=99.10 E-value=4.3e-11 Score=89.80 Aligned_cols=45 Identities=22% Similarity=0.358 Sum_probs=40.7
Q ss_pred cchHHHHHHHHHcCCCCCCHHHHHHHHHHHcC-ChHHHHHHHHhCCCCC
Q 017906 170 SNLEATVQQILDMGGGSWDRETVIRALRAAYN-NPERAVEYLYSGIPEQ 217 (364)
Q Consensus 170 ~~~e~~V~~i~~MG~~~f~r~qv~~ALrAafn-NpdRAvEyL~~GIP~~ 217 (364)
...+..|++|++|| |+|+.|++||++++| |+++|+|||+.++++.
T Consensus 7 ~~~e~~v~~L~~MG---F~~~~a~~AL~~t~n~~~e~A~~wL~~h~~d~ 52 (64)
T 2crn_A 7 GSSPSLLEPLLAMG---FPVHTALKALAATGRKTAEEALAWLHDHCNDP 52 (64)
T ss_dssp CCSCSSHHHHHHTS---CCHHHHHHHHHHHTSCCHHHHHHHHHHHSSST
T ss_pred CCCHHHHHHHHHcC---CCHHHHHHHHHHhCCCCHHHHHHHHHhCCCCc
Confidence 34567899999999 999999999999999 9999999999998753
No 113
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=99.10 E-value=7.3e-11 Score=79.93 Aligned_cols=38 Identities=29% Similarity=0.490 Sum_probs=36.3
Q ss_pred chHHHHHHHHHcCCCCCCHHHHHHHHHHHcCChHHHHHHHH
Q 017906 171 NLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLY 211 (364)
Q Consensus 171 ~~e~~V~~i~~MG~~~f~r~qv~~ALrAafnNpdRAvEyL~ 211 (364)
++++.|++|++|| |+|++|++||+++.||+++|++||+
T Consensus 3 ~~~~~i~~L~~mG---f~~~~a~~AL~~~~~n~e~A~~~L~ 40 (40)
T 1z96_A 3 GLNSKIAQLVSMG---FDPLEAAQALDAANGDLDVAASFLL 40 (40)
T ss_dssp CHHHHHHHHHHTT---CCHHHHHHHHHHTTTCHHHHHHHHC
T ss_pred hHHHHHHHHHHcC---CCHHHHHHHHHHcCCCHHHHHHHHC
Confidence 5788999999999 9999999999999999999999995
No 114
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.09 E-value=1.1e-10 Score=90.16 Aligned_cols=43 Identities=21% Similarity=0.370 Sum_probs=40.1
Q ss_pred hHHHHHHHHHcCCCCCCHHHHHHHHHHHcC-ChHHHHHHHHhCCCCC
Q 017906 172 LEATVQQILDMGGGSWDRETVIRALRAAYN-NPERAVEYLYSGIPEQ 217 (364)
Q Consensus 172 ~e~~V~~i~~MG~~~f~r~qv~~ALrAafn-NpdRAvEyL~~GIP~~ 217 (364)
.++.|++||+|| |+|++|++|||+++| |+++|+|||+.++++.
T Consensus 9 ~e~~v~~L~~MG---F~~~~a~~AL~~t~n~~ve~A~ewL~~~~~d~ 52 (74)
T 2dag_A 9 DESVIIQLVEMG---FPMDACRKAVYYTGNSGAEAAMNWVMSHMDDP 52 (74)
T ss_dssp CHHHHHHHHHHS---CCHHHHHHHHHHHTSCCHHHHHHHHHHHTTST
T ss_pred CHHHHHHHHHcC---CCHHHHHHHHHHhCCCCHHHHHHHHHhCCCCc
Confidence 478999999999 999999999999997 7999999999998764
No 115
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=99.06 E-value=9.8e-11 Score=87.87 Aligned_cols=42 Identities=19% Similarity=0.344 Sum_probs=38.6
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHc-CChHHHHHHHHhCCCCC
Q 017906 173 EATVQQILDMGGGSWDRETVIRALRAAY-NNPERAVEYLYSGIPEQ 217 (364)
Q Consensus 173 e~~V~~i~~MG~~~f~r~qv~~ALrAaf-nNpdRAvEyL~~GIP~~ 217 (364)
++.|++||+|| |+|++|++|||+++ +|+++|++||+.++++.
T Consensus 10 ~~~v~~L~~MG---F~~~~a~~AL~~t~~~nve~A~ewLl~~~~d~ 52 (64)
T 1whc_A 10 LTALESLIEMG---FPRGRAEKALALTGNQGIEAAMDWLMEHEDDP 52 (64)
T ss_dssp CCHHHHHHTTT---CCHHHHHHHHHHHTSCCHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHcC---CCHHHHHHHHHHhcCCCHHHHHHHHHhCCCCc
Confidence 45899999999 99999999999995 89999999999998764
No 116
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.05 E-value=1.3e-10 Score=81.87 Aligned_cols=38 Identities=37% Similarity=0.597 Sum_probs=35.7
Q ss_pred hHHHHHHHHHcCCCCCCHHHHHHHHHHHcCChHHHHHHHHhC
Q 017906 172 LEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 213 (364)
Q Consensus 172 ~e~~V~~i~~MG~~~f~r~qv~~ALrAafnNpdRAvEyL~~G 213 (364)
+++.|++|++|| |+|++|++|||++ ||+++|+|||++.
T Consensus 9 ~~~~v~~L~~MG---F~~~~a~~AL~~~-~n~e~A~~~L~~h 46 (47)
T 2ekk_A 9 NQQQLQQLMDMG---FTREHAMEALLNT-STMEQATEYLLTH 46 (47)
T ss_dssp CHHHHHHHHHHH---CCHHHHHHHHHHS-CSHHHHHHHHHTC
T ss_pred CHHHHHHHHHcC---CCHHHHHHHHHHc-CCHHHHHHHHHcC
Confidence 588999999999 9999999999999 7999999999864
No 117
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=99.05 E-value=1e-10 Score=87.81 Aligned_cols=40 Identities=23% Similarity=0.408 Sum_probs=37.6
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHcC-ChHHHHHHHHhCCC
Q 017906 173 EATVQQILDMGGGSWDRETVIRALRAAYN-NPERAVEYLYSGIP 215 (364)
Q Consensus 173 e~~V~~i~~MG~~~f~r~qv~~ALrAafn-NpdRAvEyL~~GIP 215 (364)
+..|++||+|| |+|++|++|||+++| |+++|||||++++-
T Consensus 20 e~~i~~L~~MG---F~~~~a~~AL~~t~~~nve~A~ewL~~~~~ 60 (64)
T 2cpw_A 20 GSALDVLLSMG---FPRARAQKALASTGGRSVQTACDWLFSHSG 60 (64)
T ss_dssp CCHHHHHHHHT---CCHHHHHHHHHHTTTSCHHHHHHHHHSCCS
T ss_pred HHHHHHHHHcC---CCHHHHHHHHHHcCCCCHHHHHHHHHhCCC
Confidence 56899999999 999999999999998 99999999998854
No 118
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.98 E-value=1.2e-09 Score=87.92 Aligned_cols=72 Identities=18% Similarity=0.238 Sum_probs=62.0
Q ss_pred EEEEEe---CCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCC------ee-c-CCCCChhhhccCCCCEE
Q 017906 2 KVFVKT---LKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQG------KV-L-KDVTTLEENKVAENSFV 70 (364)
Q Consensus 2 kI~VKt---l~gk~~~ieV~~s~TV~dLK~kI~~~~g~~~ip~~~qkLif~G------ki-L-~D~~tL~d~gIk~~s~I 70 (364)
+|+|+. .+|+.+.+.+..++||.+||.+|+..+| +|+..|||+|.+ .+ | +|.++|.+|+|.+|++|
T Consensus 11 ~l~I~~~~~~~~~~~e~~l~~~~TV~~LK~~i~~~~g---ip~~~q~L~~~~~~~~~~~~~L~~d~~~L~~y~i~~G~~I 87 (97)
T 1wjn_A 11 TLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRLLK---VPVSELLLSYESSKMPGREIELENDLQPLQFYSVENGDCL 87 (97)
T ss_dssp EEEEEESSCSSSCCEEEEEETTSBHHHHHHHHHTTTT---CCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCTTCEE
T ss_pred EEEEEecCCCCCcEEEEECCCCCCHHHHHHHHHHHHC---CChhHeEEEEEcCCCCceeeccCCCcccHhhcCCCCCCEE
Confidence 566765 4678899999999999999999999999 999999999863 22 5 67889999999999999
Q ss_pred EEEEec
Q 017906 71 VVMLTK 76 (364)
Q Consensus 71 ~v~v~k 76 (364)
||....
T Consensus 88 ~V~d~~ 93 (97)
T 1wjn_A 88 LVRWSG 93 (97)
T ss_dssp EEECCS
T ss_pred EEEecC
Confidence 998744
No 119
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.98 E-value=4.7e-10 Score=88.33 Aligned_cols=43 Identities=23% Similarity=0.366 Sum_probs=40.2
Q ss_pred hHHHHHHHHHcCCCCCCHHHHHHHHHHHcCChHHHHHHHHhCCCCC
Q 017906 172 LEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQ 217 (364)
Q Consensus 172 ~e~~V~~i~~MG~~~f~r~qv~~ALrAafnNpdRAvEyL~~GIP~~ 217 (364)
.++.|++||+|| |+|++|++|||+++||+++|+|||+.++.+.
T Consensus 29 ~e~~i~~L~~MG---F~~~~a~~AL~~t~~nve~A~ewL~~~~~d~ 71 (83)
T 2dai_A 29 DEAALRQLTEMG---FPENRATKALQLNHMSVPQAMEWLIEHAEDP 71 (83)
T ss_dssp CHHHHHHHHHHT---CCHHHHHHHHHHTTSCHHHHHHHHHHGGGCS
T ss_pred CHHHHHHHHHcC---CCHHHHHHHHHHhCCCHHHHHHHHHHCCCCc
Confidence 588999999999 9999999999999999999999999997653
No 120
>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=98.97 E-value=5.4e-10 Score=88.19 Aligned_cols=43 Identities=26% Similarity=0.365 Sum_probs=39.8
Q ss_pred hHHHHHHHHHcCCCCCCHHHHHHHHHHHcC-ChHHHHHHHHhCCCCC
Q 017906 172 LEATVQQILDMGGGSWDRETVIRALRAAYN-NPERAVEYLYSGIPEQ 217 (364)
Q Consensus 172 ~e~~V~~i~~MG~~~f~r~qv~~ALrAafn-NpdRAvEyL~~GIP~~ 217 (364)
.+..|++||+|| |+|++|++|||+++| |+++|++||++++++.
T Consensus 29 ~e~~v~~L~~MG---F~~~~a~~AL~~t~n~n~e~A~ewL~~h~~d~ 72 (84)
T 1vek_A 29 NEEIVAQLVSMG---FSQLHCQKAAINTSNAGVEEAMNWLLSHMDDP 72 (84)
T ss_dssp CHHHHHHHHHHT---CCHHHHHHHHHHTTTCCHHHHHHHHHHHTTCS
T ss_pred CHHHHHHHHHcC---CCHHHHHHHHHHHcCCCHHHHHHHHHhCCCcc
Confidence 588999999999 999999999999985 9999999999998753
No 121
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=98.96 E-value=5.8e-10 Score=81.82 Aligned_cols=39 Identities=28% Similarity=0.577 Sum_probs=36.8
Q ss_pred hHHHHHHHHHcCCCCCCHHHHHHHHHHHcCChHHHHHHHHhC
Q 017906 172 LEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 213 (364)
Q Consensus 172 ~e~~V~~i~~MG~~~f~r~qv~~ALrAafnNpdRAvEyL~~G 213 (364)
-++.|..|++|| |.++|+.+||++.-||.+||+|||++-
T Consensus 19 e~e~V~~LvsMG---Fs~~qA~kALKat~~NvErAaDWLFSH 57 (63)
T 1wgn_A 19 ERQCVETVVNMG---YSYECVLRAMKKKGENIEQILDYLFAH 57 (63)
T ss_dssp HHHHHHHHHHHH---CCHHHHHHHHHHHCSCHHHHHHHHHHH
T ss_pred hHHHHHHHHHcC---CCHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 367899999999 999999999999999999999999975
No 122
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=98.90 E-value=1.5e-09 Score=78.62 Aligned_cols=41 Identities=29% Similarity=0.442 Sum_probs=37.4
Q ss_pred chHHHHHHHHHcCCCCC-CHHHHHHHHHHHcCChHHHHHHHHhCC
Q 017906 171 NLEATVQQILDMGGGSW-DRETVIRALRAAYNNPERAVEYLYSGI 214 (364)
Q Consensus 171 ~~e~~V~~i~~MG~~~f-~r~qv~~ALrAafnNpdRAvEyL~~GI 214 (364)
.|++.|++|++|| | +|+.+++||+++.+|.+||||||+++.
T Consensus 8 ~~~~~l~~L~~MG---F~d~~~n~~AL~~~~Gdv~~Ave~L~~~~ 49 (54)
T 2dah_A 8 HFQVQLEQLRSMG---FLNREANLQALIATGGDVDAAVEKLRQSS 49 (54)
T ss_dssp SSHHHHHHHHHHT---CCCHHHHHHHHHHHTSCHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHcC---CCcHHHHHHHHHHcCCCHHHHHHHHHhCC
Confidence 4899999999999 9 666689999999999999999999874
No 123
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=98.89 E-value=1.6e-09 Score=91.56 Aligned_cols=41 Identities=41% Similarity=0.608 Sum_probs=39.7
Q ss_pred hHHHHHHHHHcCCCCCCHHHHHHHHHHHcCChHHHHHHHHhCCC
Q 017906 172 LEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 215 (364)
Q Consensus 172 ~e~~V~~i~~MG~~~f~r~qv~~ALrAafnNpdRAvEyL~~GIP 215 (364)
.+..|++|++|| |+|++|++|||+++||++||+|||++|++
T Consensus 78 ~e~~v~~L~~MG---F~~~~a~~AL~~~~~~~e~A~e~L~~~~~ 118 (126)
T 2lbc_A 78 PEEIVAIITSMG---FQRNQAIQALRATNNNLERALDWIFSHPE 118 (126)
T ss_dssp CHHHHHHHHHHT---SCHHHHHHHHHHHTSCHHHHHHHHHTCCS
T ss_pred CHHHHHHHHHcC---CCHHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence 588999999999 99999999999999999999999999987
No 124
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=98.87 E-value=2.2e-09 Score=88.29 Aligned_cols=42 Identities=33% Similarity=0.509 Sum_probs=39.4
Q ss_pred chHHHHHHHHHcCCCCC-CHHHHHHHHHHHcCChHHHHHHHHhCCC
Q 017906 171 NLEATVQQILDMGGGSW-DRETVIRALRAAYNNPERAVEYLYSGIP 215 (364)
Q Consensus 171 ~~e~~V~~i~~MG~~~f-~r~qv~~ALrAafnNpdRAvEyL~~GIP 215 (364)
.|++.|++|++|| | +|+.+++||+++++|++||||||++|.+
T Consensus 65 ~~~~qL~qL~eMG---F~d~~~ni~AL~~t~Gdve~AVe~L~~~~~ 107 (108)
T 2cwb_A 65 QWQPQLQQLRDMG---IQDDELSLRALQATGGDIQAALELIFAGGA 107 (108)
T ss_dssp TTHHHHHHHHTTT---CCCHHHHHHHHHHHTSCHHHHHHHHHHTSC
T ss_pred chHHHHHHHHHcC---CCCHHHHHHHHHHhCCCHHHHHHHHHhcCC
Confidence 5899999999999 9 8899999999999999999999999854
No 125
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=98.83 E-value=1.5e-08 Score=84.46 Aligned_cols=73 Identities=19% Similarity=0.273 Sum_probs=68.5
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCChhhhccCCCCEEEEEEec
Q 017906 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTK 76 (364)
Q Consensus 1 MkI~VKtl~gk~~~ieV~~s~TV~dLK~kI~~~~g~~~ip~~~qkLif~GkiL~D~~tL~d~gIk~~s~I~v~v~k 76 (364)
|+|+|++.+|+.+.|.|..++++..|+...+++.| ++...+||+|.|+.|.++.|.+++++.++++|.|++..
T Consensus 41 I~LKV~~qdg~ev~fkIk~tt~L~KLm~aY~er~G---l~~~~irFlFDG~rI~~~~TP~dL~MEDgD~IdV~~~Q 113 (115)
T 3kyd_D 41 IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQG---VPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQ 113 (115)
T ss_dssp EEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHT---CCTTSEEEEETTEECCTTCCTTTTTCCTTCEEEEEECC
T ss_pred EEEEEEcCCCCEEEEEEccCChHHHHHHHHHHHhC---CChhhEEEEECCeECCCCCCHHHcCCCCCCEEEEEeec
Confidence 46888888899999999999999999999999999 99999999999999999999999999999999998754
No 126
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=98.79 E-value=5.1e-09 Score=82.75 Aligned_cols=38 Identities=29% Similarity=0.430 Sum_probs=36.9
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHcCChHHHHHHHHhC
Q 017906 173 EATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 213 (364)
Q Consensus 173 e~~V~~i~~MG~~~f~r~qv~~ALrAafnNpdRAvEyL~~G 213 (364)
++.|++|++|| |+|++|++||++.++|+++|+|||+..
T Consensus 22 ~~~I~qL~~MG---F~~~~a~~AL~~~n~n~e~A~ewL~~h 59 (85)
T 2dkl_A 22 SRLIKQLTDMG---FPREPAEEALKSNNMNLDQAMSALLEK 59 (85)
T ss_dssp HHHHHHHHHHT---CCHHHHHHHHHHTTSCHHHHHHHHHTT
T ss_pred HHHHHHHHHcC---CCHHHHHHHHHHcCCCHHHHHHHHHHC
Confidence 88999999999 999999999999999999999999987
No 127
>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A
Probab=98.71 E-value=2.8e-09 Score=75.06 Aligned_cols=41 Identities=22% Similarity=0.327 Sum_probs=38.5
Q ss_pred chHHHHHHHHHcCCCCCCHHHHHHHHHHHcCChHHHHHHHHhCC
Q 017906 171 NLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGI 214 (364)
Q Consensus 171 ~~e~~V~~i~~MG~~~f~r~qv~~ALrAafnNpdRAvEyL~~GI 214 (364)
+.+++|++|++|| |+|.+|++||.+.-+|.++|++||+++.
T Consensus 3 ~e~eaI~rL~~mG---F~~~~a~~Al~a~~~n~e~A~~~Lf~~~ 43 (47)
T 1dv0_A 3 QEKEAIERLKALG---FPESLVIQAYFACEKNENLAANFLLSQN 43 (47)
T ss_dssp CCHHHHTTTTTTT---CCHHHHHHHHTTTTSCHHHHHHHTTSCC
T ss_pred chHHHHHHHHHcC---CCHHHHHHHHHHcCCCHHHHHHHHHhCc
Confidence 4578999999999 9999999999999999999999999874
No 128
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=98.61 E-value=4.7e-08 Score=69.35 Aligned_cols=38 Identities=34% Similarity=0.424 Sum_probs=35.6
Q ss_pred hHHHHHHHHHcCCCCCCHHHHHHHHHHHcCChHHHHHHHHh
Q 017906 172 LEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYS 212 (364)
Q Consensus 172 ~e~~V~~i~~MG~~~f~r~qv~~ALrAafnNpdRAvEyL~~ 212 (364)
.+..|+.||+|| |+|++|++||+.+-||.|-|..+|+.
T Consensus 11 ~~~~Ia~Lm~mG---Fsr~~ai~AL~~a~nnve~AaniLle 48 (52)
T 2ooa_A 11 VDAKIAKLMGEG---YAFEEVKRALEIAQNNVEVARSILRE 48 (52)
T ss_dssp CHHHHHHHHHTT---CCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHcC---CCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 467999999999 99999999999999999999999973
No 129
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=98.57 E-value=1.8e-07 Score=84.99 Aligned_cols=76 Identities=11% Similarity=0.116 Sum_probs=70.2
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCChhhhccCCCCEEEEEEecCCCC
Q 017906 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVS 80 (364)
Q Consensus 1 MkI~VKtl~gk~~~ieV~~s~TV~dLK~kI~~~~g~~~ip~~~qkLif~GkiL~D~~tL~d~gIk~~s~I~v~v~k~k~~ 80 (364)
++|+|+ .+|+.+.|.|..++++..||+..+++.| ++...+||+|.|+.|.++.|.+++++.+|++|.|+.......
T Consensus 30 I~LkV~-~~g~~v~fkIk~~t~l~kL~~ay~er~G---i~~~~~RF~FdG~rI~~~~TP~dL~MEdgD~Idv~~~q~gg~ 105 (200)
T 3pge_A 30 INLKVS-DGSSEIFFKIKKTTPLRRLMEAFAKRQG---KEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGGG 105 (200)
T ss_dssp EEEEEE-CSSCEEEEEECTTSCTHHHHHHHHHHHS---SCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCSCCC
T ss_pred EEEEEe-cCCCEEEEEEecCCHHHHHHHHHHHHhC---CChhhEEEEECCEEcCCCCCHHHcCCCCCCEEEEEeccCcCc
Confidence 467887 5889999999999999999999999999 999999999999999999999999999999999999876544
No 130
>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.55 E-value=8.6e-08 Score=68.31 Aligned_cols=38 Identities=26% Similarity=0.401 Sum_probs=35.5
Q ss_pred hHHHHHHHHHcCCCCCCHHHHHHHHHHHcCChHHHHHHHHh
Q 017906 172 LEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYS 212 (364)
Q Consensus 172 ~e~~V~~i~~MG~~~f~r~qv~~ALrAafnNpdRAvEyL~~ 212 (364)
.|..|..||+|| |+|++|++||+.+-||.|-|..+|+.
T Consensus 9 ~e~~I~~L~~lG---F~r~~ai~AL~~a~nnve~Aa~iL~e 46 (53)
T 2d9s_A 9 LSSEIERLMSQG---YSYQDIQKALVIAHNNIEMAKNILRE 46 (53)
T ss_dssp SHHHHHHHHHHT---CCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHcC---CCHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 466799999999 99999999999999999999999984
No 131
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=98.53 E-value=1.2e-07 Score=85.17 Aligned_cols=75 Identities=11% Similarity=0.121 Sum_probs=68.8
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCChhhhccCCCCEEEEEEecCCC
Q 017906 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKV 79 (364)
Q Consensus 1 MkI~VKtl~gk~~~ieV~~s~TV~dLK~kI~~~~g~~~ip~~~qkLif~GkiL~D~~tL~d~gIk~~s~I~v~v~k~k~ 79 (364)
|+|+|+ .+|+.+.|.|..++++..|++..+++.| ++...++|+|.|+.|.++.|.+++++.++++|.|++.....
T Consensus 58 InLKVk-~dG~eV~FKIKrtTpL~KLmeAYcERqG---L~~~sIRFLFDGqRI~~ddTPeDLdMEDGDtIDV~leQ~GG 132 (207)
T 3tix_A 58 INLKVS-DGSSEIFFKIKKTTPLRRLMEAFAKRQG---KEMDSLTFLYDGIEIQADQTPEDLDMEDNDIIEAHREQIGG 132 (207)
T ss_dssp EEEEEE-CSSCEEEEEEETTSCTHHHHHHHHHHTT---CCGGGSCEEETTEECCSSCCTTTTTCCTTEEEEECCCCCTT
T ss_pred EEEEEe-cCCCEEEEEEccCChHHHHHHHHHHHhC---CCcccEEEEECCeecCCCCCHHHcCCCCCCEEEEEEeccCC
Confidence 457776 4888999999999999999999999999 89999999999999999999999999999999999876553
No 132
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=98.50 E-value=7.6e-08 Score=80.53 Aligned_cols=39 Identities=18% Similarity=0.313 Sum_probs=37.1
Q ss_pred hHHHHHHHHHcCCCCCCHHHHHHHHHHHcCChHHHHHHHHhC
Q 017906 172 LEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 213 (364)
Q Consensus 172 ~e~~V~~i~~MG~~~f~r~qv~~ALrAafnNpdRAvEyL~~G 213 (364)
+.+.|.+|++|| |++++|+.||+...||.|||||||+++
T Consensus 76 ~~~~v~~L~eMG---F~~~~a~~AL~~~~nd~erAlewL~~~ 114 (118)
T 4ae4_A 76 FLQLMSKFKEMG---FELKDIKEVLLLHNNDQDNALEDLMAR 114 (118)
T ss_dssp HHHHHHHHHHTT---CCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHcC---CCHHHHHHHHHHcCCCHHHHHHHHHHh
Confidence 567899999999 999999999999999999999999986
No 133
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=98.49 E-value=8.1e-08 Score=74.89 Aligned_cols=69 Identities=10% Similarity=0.181 Sum_probs=57.2
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCee---c--CCCCChhhhccCCCCEEEEE
Q 017906 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKV---L--KDVTTLEENKVAENSFVVVM 73 (364)
Q Consensus 1 MkI~VKtl~gk~~~ieV~~s~TV~dLK~kI~~~~g~~~ip~~~qkLif~Gki---L--~D~~tL~d~gIk~~s~I~v~ 73 (364)
|.|.||+.+| .+.|+|++++||.+||.+|.+.++ ++.+.+.|.++-.. | .++.+|+++||+.|+.|+|.
T Consensus 5 m~lRvrs~~G-~~Ri~v~~~~t~~~L~~~I~~~~~---i~~~~~~l~~~~~p~~~l~~~~~~~l~~lgl~hGd~l~l~ 78 (80)
T 2pjh_A 5 IIIRVQSPDG-VKRITATKRETAATFLKKVAKEFG---FQNNGFSVYINRNKTGEITASSSKSLHLLKIKHGDLLFLF 78 (80)
T ss_dssp CCCEEECSSE-EEECCCCSSCCHHHHHHHHHHHTC---CCTTTCCCCCSCCGGGGSSSCCCCTTTTTCCCTTCCEEC-
T ss_pred EEEEEECCCC-CEEEEcCCcChHHHHHHHHHHHcC---CCCCcceEEecCCCCCcccCCCCCCHHHcCCCCCCEEEEe
Confidence 6788998777 888999999999999999999999 87788776554332 3 47889999999999999874
No 134
>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens}
Probab=98.47 E-value=2.2e-07 Score=63.95 Aligned_cols=41 Identities=29% Similarity=0.447 Sum_probs=38.5
Q ss_pred CcchHHHHHHHHHcCCCCCCHHHHHHHHHHHcCChHHHHHHHHh
Q 017906 169 GSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYS 212 (364)
Q Consensus 169 g~~~e~~V~~i~~MG~~~f~r~qv~~ALrAafnNpdRAvEyL~~ 212 (364)
|..+|..|..||+|| |+|+.|++||-.+-||.+-|-+.|+.
T Consensus 1 ~~~~e~~I~~L~s~G---f~~~~~~rAL~ia~Nnie~A~nIL~e 41 (46)
T 2oo9_A 1 GSQLSSEIENLMSQG---YSYQDIQKALVIAQNNIEMAKNILRE 41 (46)
T ss_dssp CCHHHHHHHHHHHTT---BCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred CcchHHHHHHHHHcC---CCHHHHHHHHHHhhccHHHHHHHHHH
Confidence 567899999999999 99999999999999999999999973
No 135
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=98.40 E-value=1.6e-06 Score=66.87 Aligned_cols=70 Identities=16% Similarity=0.224 Sum_probs=65.1
Q ss_pred EEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCC-CeEEEeCCeecCCCCChhhhccCCCCEEEEEE
Q 017906 2 KVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPAS-QQMLIHQGKVLKDVTTLEENKVAENSFVVVML 74 (364)
Q Consensus 2 kI~VKtl~gk~~~ieV~~s~TV~dLK~kI~~~~g~~~ip~~-~qkLif~GkiL~D~~tL~d~gIk~~s~I~v~v 74 (364)
.+.++..+...+.|.|..+.+|.+|-+..+.+.| |+.+ .++|.|.|..|+.+.++.+|++.+++.|-||+
T Consensus 11 ~~~~~~~~~~dl~f~I~~~t~v~kLi~ayc~~~~---I~~~~~IrllFDGdRLdp~~tp~DlemeD~D~IDvmL 81 (82)
T 3goe_A 11 TLLLRSSKSEDLRLSIPVDFTVKDLIKRYCTEVK---ISFHERIRLEFEGEWLDPNDQVQSTELEDEDQVSVVL 81 (82)
T ss_dssp EEEEEESSSCCEEEEEETTSBHHHHHHHHHHHHT---CCCCTTCEEEETTEECCTTSBGGGSSCCTTCEEEEEC
T ss_pred HHhhhccCCCCeEEEecCCCCHHHHHHHHHHHcC---CCcCceEEEEEcCcccCccCChhhhCCcCCceeeeee
Confidence 4667777777899999999999999999999999 9899 99999999999999999999999999999985
No 136
>2juj_A E3 ubiquitin-protein ligase CBL; alpha helix, UBA domain, calcium, cytoplasm, metal- binding, phosphorylation, proto-oncogene, SH2 domain; NMR {Homo sapiens}
Probab=98.37 E-value=4e-07 Score=65.04 Aligned_cols=39 Identities=26% Similarity=0.344 Sum_probs=36.8
Q ss_pred hHHHHHHHHHcCCCCCCHHHHHHHHHHHcCChHHHHHHHHhC
Q 017906 172 LEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 213 (364)
Q Consensus 172 ~e~~V~~i~~MG~~~f~r~qv~~ALrAafnNpdRAvEyL~~G 213 (364)
.|..|..||+|| |+|+.|++||+.+-||.+-|-.+|+.=
T Consensus 7 ~e~~Ia~L~smG---fsr~da~~AL~ia~Ndv~~AtNiLlEf 45 (56)
T 2juj_A 7 LSSEIENLMSQG---YSYQDIQKALVIAQNNIEMAKNILREF 45 (56)
T ss_dssp HHHHHHHHHTTT---CCHHHHHHHHHHTTTCSHHHHHHHHHS
T ss_pred ChHHHHHHHHcC---CCHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 678999999999 999999999999999999999999853
No 137
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A
Probab=98.29 E-value=5.3e-07 Score=81.85 Aligned_cols=43 Identities=33% Similarity=0.470 Sum_probs=40.2
Q ss_pred cCCcchHHHHHHHHHcCCCCCCHHHHHHHHHHHcCChHHHHHHHHh
Q 017906 167 VAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYS 212 (364)
Q Consensus 167 ~~g~~~e~~V~~i~~MG~~~f~r~qv~~ALrAafnNpdRAvEyL~~ 212 (364)
..+..+++.|++|++|| |+|++|+.||+...+|.++|+|||++
T Consensus 158 ~~~~~~eekV~~l~~MG---f~~~~a~~AL~~~~wd~~~A~e~L~~ 200 (201)
T 3k9o_A 158 VSSPEYTKKIENLCAMG---FDRNAVIVALSSKSWDVETATELLLS 200 (201)
T ss_dssp CCCHHHHHHHHHHHTTT---CCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred cccchhHHHHHHHHHcC---CCHHHHHHHHHHcCCCHHHHHHHHhc
Confidence 34668999999999999 99999999999999999999999985
No 138
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=98.27 E-value=4e-06 Score=67.70 Aligned_cols=70 Identities=10% Similarity=0.202 Sum_probs=64.0
Q ss_pred CEEEEEeCCCc-EEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCChhhhccCCCCEEEEE
Q 017906 1 MKVFVKTLKGT-HFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVM 73 (364)
Q Consensus 1 MkI~VKtl~gk-~~~ieV~~s~TV~dLK~kI~~~~g~~~ip~~~qkLif~GkiL~D~~tL~d~gIk~~s~I~v~ 73 (364)
++|+|+..+|+ .+.|.|..++++..|....+++.| ++....+|+|.|..|..+.|..++++.++++|.|+
T Consensus 26 I~LkV~~~dg~~~v~fkIk~~t~l~kLm~aY~~~~g---~~~~~vrF~FDG~rI~~~~TP~dLdMEDgD~IDv~ 96 (97)
T 2jxx_A 26 LQLRVQGKEKHQTLEVSLSRDSPLKTLMSHYEEAMG---LSGRKLSFFFDGTKLSGRELPADLGMESGDLIEVW 96 (97)
T ss_dssp EEEEEEESSSSCEEEEEEETTSCHHHHHHHHHHHTT---CSSSCCEEEETTEECCSCSCHHHHTCCTTEEEEEE
T ss_pred EEEEEEcCCCCEEEEEEECCCChHHHHHHHHHHHHC---CCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence 35777777784 789999999999999999999999 88999999999999999999999999999999886
No 139
>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}
Probab=98.24 E-value=1.3e-07 Score=86.01 Aligned_cols=75 Identities=11% Similarity=0.122 Sum_probs=0.4
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCChhhhccCCCCEEEEEEecCCC
Q 017906 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKV 79 (364)
Q Consensus 1 MkI~VKtl~gk~~~ieV~~s~TV~dLK~kI~~~~g~~~ip~~~qkLif~GkiL~D~~tL~d~gIk~~s~I~v~v~k~k~ 79 (364)
|+|+| +.+|+.+.|.|..++++..|++..+++.| +++..+||+|+|+.|.++.|.+++++.+|++|.|+......
T Consensus 22 InLKV-~qdGseV~FKIKrtTpL~KLM~AYcERqG---Ls~~siRFLFDGqRI~dddTPadL~MEDGDtIDV~leQ~GG 96 (227)
T 3v7o_A 22 INLKV-SDGSSEIFFKIKKTTPLRRLMEAFAKRQG---KEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGG 96 (227)
T ss_dssp ------------------------------------------------------------------------------C
T ss_pred EEEEE-eCCCCEEEEEEccCChHHHHHHHHHHHhC---CCccceEEEECCEecCCCCCHHHcCCCCCCEEEEEecccCC
Confidence 56777 67888999999999999999999999999 99999999999999999999999999999999999876553
No 140
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=98.20 E-value=1.9e-06 Score=70.04 Aligned_cols=44 Identities=27% Similarity=0.571 Sum_probs=41.3
Q ss_pred cchHHHHHHHHHc-CCCCCCHHHHHHHHHHHcCChHHHHHHHHhCCCC
Q 017906 170 SNLEATVQQILDM-GGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE 216 (364)
Q Consensus 170 ~~~e~~V~~i~~M-G~~~f~r~qv~~ALrAafnNpdRAvEyL~~GIP~ 216 (364)
.++++.|..||+| | |++++|+.||..+.++.++|++||+.|.++
T Consensus 37 ~d~eekVk~L~EmtG---~seeeAr~AL~~~ngDl~~AI~~Lleg~~~ 81 (104)
T 1wj7_A 37 ADFEEKVKQLIDITG---KNQDECVIALHDCNGDVNRAINVLLEGNPD 81 (104)
T ss_dssp HHHHHHHHHHHHHTC---CCHHHHHHHHHHHTSCHHHHHHHHHTCSSS
T ss_pred ccHHHHHHHHHHhhC---CCHHHHHHHHHHcCCCHHHHHHHHHhCCCc
Confidence 3578999999999 9 999999999999999999999999999874
No 141
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=98.11 E-value=2.9e-06 Score=70.94 Aligned_cols=39 Identities=33% Similarity=0.634 Sum_probs=36.7
Q ss_pred chHHHHHHHHHcCCCCCCHHHHHHHHHHHcCChHHHHHHHHh
Q 017906 171 NLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYS 212 (364)
Q Consensus 171 ~~e~~V~~i~~MG~~~f~r~qv~~ALrAafnNpdRAvEyL~~ 212 (364)
.-.+.|+.|++|| |+++.|++||++..||+++|+|||+.
T Consensus 7 ~e~~~v~~l~~MG---Fp~~~~~kAl~~~g~~~e~amewL~~ 45 (118)
T 4ae4_A 7 SERQCVETVVNMG---YSYECVLRAMKAAGANIEQILDYLFA 45 (118)
T ss_dssp HHHHHHHHHHHTT---CCHHHHHHHHHHHCSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcC---CCHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 3578999999999 99999999999999999999999985
No 142
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=98.04 E-value=2.5e-05 Score=62.59 Aligned_cols=72 Identities=11% Similarity=0.197 Sum_probs=66.6
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCChhhhccCCCCEEEEEEec
Q 017906 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTK 76 (364)
Q Consensus 1 MkI~VKtl~gk~~~ieV~~s~TV~dLK~kI~~~~g~~~ip~~~qkLif~GkiL~D~~tL~d~gIk~~s~I~v~v~k 76 (364)
+.|+|+ .+|..+.|.|..++....|.+..+.+.| +.++.++++|.|..+.++.|-.++++.++++|.|++.+
T Consensus 22 IniKV~-~~g~ev~FkIK~tt~l~KL~~aYc~r~g---v~~~sirFlfDG~rI~~~~TP~~L~meD~DiID~~~~~ 93 (95)
T 2l76_A 22 FPLKIR-CRADLVRLPLRMSEPLQSVVDHMATHLG---VSPSRILLLFGETELSPTATPRTLKLGVADIIDCVVLT 93 (95)
T ss_dssp EEEEEE-CSSSEEEEEECSSSCTHHHHHHHHHHHT---SCGGGEEEEETTEECCTTSCHHHHTCCSSCEEEEEECC
T ss_pred EEEEEE-cCCcEEEEEEecCChHHHHHHHHHhhcC---CChhhEEEEECCcCCCCCCCHhHcCCCCCCEEEEEEec
Confidence 367788 4788999999999999999999999999 88999999999999999999999999999999999865
No 143
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=98.02 E-value=4.7e-06 Score=59.94 Aligned_cols=42 Identities=24% Similarity=0.342 Sum_probs=39.1
Q ss_pred CcchHHHHHHHHHcCCCCC-CHHHHHHHHHHHcCChHHHHHHHHhC
Q 017906 169 GSNLEATVQQILDMGGGSW-DRETVIRALRAAYNNPERAVEYLYSG 213 (364)
Q Consensus 169 g~~~e~~V~~i~~MG~~~f-~r~qv~~ALrAafnNpdRAvEyL~~G 213 (364)
.+.|...+.+|.+|| | +++..++|||...+|.++||++|+.+
T Consensus 6 ee~~a~~L~~L~eMG---F~D~~~N~~aL~~~~gnv~~aI~~Ll~~ 48 (54)
T 2cp8_A 6 SGQTAALMAHLFEMG---FCDRQLNLRLLKKHNYNILQVVTELLQL 48 (54)
T ss_dssp CTTHHHHHHHHHHHT---CCCHHHHHHHHTTTTTCHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHcC---CCcHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 456888999999999 9 99999999999999999999999975
No 144
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=97.94 E-value=4.7e-06 Score=70.13 Aligned_cols=41 Identities=27% Similarity=0.386 Sum_probs=37.7
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHcC-ChHHHHHHHHhCCCC
Q 017906 173 EATVQQILDMGGGSWDRETVIRALRAAYN-NPERAVEYLYSGIPE 216 (364)
Q Consensus 173 e~~V~~i~~MG~~~f~r~qv~~ALrAafn-NpdRAvEyL~~GIP~ 216 (364)
+..|+.|++|| |++..|++|||++.| |.++|++||+...++
T Consensus 4 ~~~l~~L~~MG---F~~~~a~~AL~~t~n~~~e~A~~wL~~~~~d 45 (126)
T 2lbc_A 4 ESSVMQLAEMG---FPLEACRKAVYFTGNMGAEVAFNWIIVHMEE 45 (126)
T ss_dssp THHHHHHHTTS---SCCHHHHHHHHHHTSCCHHHHHHHHHHGGGC
T ss_pred HHHHHHHHHcC---CCHHHHHHHHHHcCCCCHHHHHHHHHHhccc
Confidence 56899999999 999999999999988 899999999998654
No 145
>2qsf_X RAD23, UV excision repair protein RAD23; alpha-beta structure, beta hairpin, transglutaminase fold, DNA-damage recognition, DNA repair; HET: DNA; 2.35A {Saccharomyces cerevisiae} PDB: 2qsg_X* 2qsh_X* 1x3z_B* 1x3w_B* 3esw_B*
Probab=97.93 E-value=6.9e-06 Score=72.65 Aligned_cols=41 Identities=24% Similarity=0.473 Sum_probs=38.4
Q ss_pred cchHHHHHHHHHcCCCCCCHHHHHHHHHHHcCChHHHHHHHHhC
Q 017906 170 SNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 213 (364)
Q Consensus 170 ~~~e~~V~~i~~MG~~~f~r~qv~~ALrAafnNpdRAvEyL~~G 213 (364)
++.+++|++|++|| |+|+.|++|+.++.+|.+.|++||+.+
T Consensus 128 pee~eaI~rL~~mG---F~r~~viqA~~ac~knee~Aan~L~~~ 168 (171)
T 2qsf_X 128 PEDDQAISRLCELG---FERDLVIQVYFACDKNEEAAANILFSD 168 (171)
T ss_dssp HHHHHHHHHHHTTT---CCHHHHHHHHHHTTTCHHHHHHHHTTC
T ss_pred ccHHHHHHHHHHcC---CCHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 45678899999999 999999999999999999999999976
No 146
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=97.91 E-value=2.4e-05 Score=71.38 Aligned_cols=73 Identities=11% Similarity=0.141 Sum_probs=67.1
Q ss_pred EEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCChhhhccCCCCEEEEEEecCC
Q 017906 2 KVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSK 78 (364)
Q Consensus 2 kI~VKtl~gk~~~ieV~~s~TV~dLK~kI~~~~g~~~ip~~~qkLif~GkiL~D~~tL~d~gIk~~s~I~v~v~k~k 78 (364)
.|+|+. +|+.+.|.|..++++..||+..+++.| ++.++++|+|.|+.+.++.+..++.+.++++|.++.....
T Consensus 23 ~ikv~~-~~~~v~~~i~~~~~l~kl~~~y~~~~g---~~~~~~~f~fdG~~i~~~~Tpk~L~~ed~d~I~~~~eq~G 95 (209)
T 3uf8_A 23 NLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQG---KEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIG 95 (209)
T ss_dssp EEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHT---CCGGGCEEEETTEECCTTCCTTTTTCCTTEEEEEECSCTT
T ss_pred EEEEEc-CCCEEEEEEeeCCHHHHHHHHHHHhhC---CChheEEEEECCEeccCCCChHHhhhcccccchhhccccc
Confidence 567776 677888999999999999999999999 9999999999999999999999999999999999976655
No 147
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=97.82 E-value=6.1e-05 Score=60.34 Aligned_cols=63 Identities=16% Similarity=0.109 Sum_probs=49.5
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeec--CCCCChhhhccC-CCCEEEEEE
Q 017906 9 KGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVL--KDVTTLEENKVA-ENSFVVVML 74 (364)
Q Consensus 9 ~gk~~~ieV~~s~TV~dLK~kI~~~~g~~~ip~~~qkLif~GkiL--~D~~tL~d~gIk-~~s~I~v~v 74 (364)
++..+.|.|.+++||..||++|++++| |++++|+|+|.||.| +.++.-..|--. ..+-|+++-
T Consensus 22 ~a~~h~v~I~~~etv~~~ke~V~eqTg---Ip~~~Q~LL~eg~~l~l~p~~~a~~~p~Tt~~~Pl~L~s 87 (94)
T 4efo_A 22 QMTAHKIYIHSYNTATIFHELVYKQTK---IISSNQELIYEGRRLVLEPGRLAQHFPKTTEENPIFVVS 87 (94)
T ss_dssp TTEEEEEEEETTCBHHHHHHHHHHHHC---CCGGGEEEEETTEEECCCTTCBGGGSCCCBTTBCEEEEE
T ss_pred cceEEEEEeccchHHHHHHHHHHHHhC---CCHHHHHHHhCCCccccCCCCccccCCCCCCCCCEEEEe
Confidence 456788999999999999999999999 999999999999875 455556666433 334555543
No 148
>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}
Probab=97.70 E-value=5e-06 Score=81.61 Aligned_cols=74 Identities=11% Similarity=0.150 Sum_probs=0.0
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCChhhhccCCCCEEEEEEecCC
Q 017906 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSK 78 (364)
Q Consensus 1 MkI~VKtl~gk~~~ieV~~s~TV~dLK~kI~~~~g~~~ip~~~qkLif~GkiL~D~~tL~d~gIk~~s~I~v~v~k~k 78 (364)
+.|+|++ +|+.+.+.|..++++..|++..+++.| ++.+.+|++|+|+.|.++.|.+++++++|++|.|+.....
T Consensus 22 I~LKV~~-~g~~v~FkIk~~t~l~kLm~aY~~r~G---~~~~~~rFlFdG~rI~~~~TP~~L~MEDgD~Idv~~~Q~g 95 (360)
T 3ix6_A 22 INLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQG---KEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIG 95 (360)
T ss_dssp ------------------------------------------------------------------------------
T ss_pred EEEEEec-CCcEEEEEEecCChHHHHHHHHHHHhC---CCcceEEEEECCeECCCCCChHHcCCCccchhhhhhccCc
Confidence 3567776 677888999999999999999999999 8899999999999999999999999999999999987543
No 149
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=97.65 E-value=0.0002 Score=56.80 Aligned_cols=74 Identities=18% Similarity=0.149 Sum_probs=68.4
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCChhhhccCCCCEEEEEEecC
Q 017906 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKS 77 (364)
Q Consensus 1 MkI~VKtl~gk~~~ieV~~s~TV~dLK~kI~~~~g~~~ip~~~qkLif~GkiL~D~~tL~d~gIk~~s~I~v~v~k~ 77 (364)
|.|+|-..+++.++|.|.++.++.++-+..+.++| +.+++-.|.|++|.|+-+..+.-.||-+|+.+.++.+.+
T Consensus 10 m~v~Vl~~n~rr~~VKvtp~t~L~~VL~eaC~K~g---l~~~~~~Lkh~~k~lDLSlpfRlsgLpnnAkLELv~~s~ 83 (90)
T 2al3_A 10 SAVSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQD---FNPSEYDLKFQRTVLDLSLQWRFANLPNNAKLEMVPVSR 83 (90)
T ss_dssp CCEEEECTTSCEEEECCCTTSBHHHHHHHHHHHTT---CCGGGCEEEETTEEESSSCBHHHHCCCSSCEEEEECSSS
T ss_pred cEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHhC---CChhhCeEEeCCEeccccceeEecCCCCCCEEEEEEccC
Confidence 67899999999999999999999999999999999 888999999999999989999999999999999986544
No 150
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=97.62 E-value=8.5e-05 Score=57.94 Aligned_cols=70 Identities=13% Similarity=0.226 Sum_probs=59.0
Q ss_pred EEEEEe--CCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCC---CCeEEEeCCeecCCCCChhhhccCCCCEEEE
Q 017906 2 KVFVKT--LKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPA---SQQMLIHQGKVLKDVTTLEENKVAENSFVVV 72 (364)
Q Consensus 2 kI~VKt--l~gk~~~ieV~~s~TV~dLK~kI~~~~g~~~ip~---~~qkLif~GkiL~D~~tL~d~gIk~~s~I~v 72 (364)
+|+|.. ..++.|.+.|....||+.|+..+.+.++.. .+. ...|+.-+|.+|.++..|.+|+|.+|+.|.+
T Consensus 6 ~ITidl~~y~~~~~DLRIP~~~tvK~Li~~l~ea~~l~-~~~~~~~~irv~NK~~~L~~~~~L~d~~ItnGD~Lei 80 (81)
T 2bps_A 6 DITIDLKHYNGSVFDLRLSDYHPVKKVIDIAWQAQSVS-MPPREGHWIRVVNKDKVFSGECKLSDCGITNGDRLEI 80 (81)
T ss_dssp EEEEECTTTTCCEEEEEEETTSBTTHHHHHHHHHSCCC-SCCCTTCEEEEGGGTEEEETTSBTGGGTCCTTCEEEE
T ss_pred EEEEEeeccCCceEEEECCCchhHHHHHHHHHHHhCCC-cCCCCCCEEEEecCCEEEcCCCEEeeCCcCCCCEEEE
Confidence 566664 578999999999999999999999999843 221 3467788999999999999999999999876
No 151
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=97.60 E-value=0.00012 Score=61.80 Aligned_cols=68 Identities=25% Similarity=0.255 Sum_probs=56.0
Q ss_pred EEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCC-------------------------------------Ce
Q 017906 2 KVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPAS-------------------------------------QQ 44 (364)
Q Consensus 2 kI~VKtl~gk~~~ieV~~s~TV~dLK~kI~~~~g~~~ip~~-------------------------------------~q 44 (364)
.|+|+.++|...++.|+.+.||.+++..|+.+.| +... ++
T Consensus 13 ~LkV~llDg~~ktl~VD~S~~V~~lv~~Ic~kig---I~n~~ey~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~ 89 (128)
T 2kc2_A 13 PLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIG---ITNHDEYSLVRELMEEKKDEGTGTLRKDKTLLRDEKKMEKLKQ 89 (128)
T ss_dssp EEEEECTTSCEEEEEEEECSSHHHHHHHHHHHHT---CCCCSSEEEEEECCCCCCCCCSSCCSSSSSCSCCSCCSCSSCC
T ss_pred cEEEEcCCCCEEEEEeCCCcCHHHHHHHHHHHhC---CCCcccccccccccccccccCchhhccccccccchhHHHHHHH
Confidence 3899999999999999999999999999999999 5422 33
Q ss_pred EEEe--CCeecCCCCChhhhccCCCCEEEE
Q 017906 45 MLIH--QGKVLKDVTTLEENKVAENSFVVV 72 (364)
Q Consensus 45 kLif--~GkiL~D~~tL~d~gIk~~s~I~v 72 (364)
||-. .+.-|+++++|.++||.++++|.+
T Consensus 90 kL~~dd~~~WLD~srtL~EQGI~e~~tllL 119 (128)
T 2kc2_A 90 KLHTDDELNWLDHGRTLREQGVEEHETLLL 119 (128)
T ss_dssp SCCCSSSEEEECSSSCHHHHTCCTTSEEEE
T ss_pred HhcccCCCCcccCCCcHHHcCCCCCCEEEE
Confidence 4421 235678899999999999999655
No 152
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=97.59 E-value=1.7e-05 Score=78.28 Aligned_cols=41 Identities=22% Similarity=0.353 Sum_probs=38.8
Q ss_pred cchHHHHHHHHHcCCCCCCHHHHHHHHHHHcCChHHHHHHHHhC
Q 017906 170 SNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 213 (364)
Q Consensus 170 ~~~e~~V~~i~~MG~~~f~r~qv~~ALrAafnNpdRAvEyL~~G 213 (364)
++.++.|++|++|| |+|++|++||+++.+|.+||++||+++
T Consensus 323 ~ee~eaI~rL~~mG---F~~~~a~~al~a~~~n~e~A~~~L~~~ 363 (368)
T 1oqy_A 323 PQEKEAIERLKALG---FPESLVIQAYFACEKNENLAANFLLSQ 363 (368)
T ss_dssp TTTHHHHHHHHHHT---CCSHHHHHHTSSSSSCSSHHHHHHHHH
T ss_pred CcCHHHHHHHHHcC---CCHHHHHHHHHHcCCCHHHHHHHHhhC
Confidence 45788999999999 999999999999999999999999986
No 153
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=97.57 E-value=9.4e-05 Score=52.78 Aligned_cols=39 Identities=28% Similarity=0.395 Sum_probs=35.0
Q ss_pred chHHHHHHHHHcCCCCCCHHHHHHHHHHHcC-ChHHHHHHHHh
Q 017906 171 NLEATVQQILDMGGGSWDRETVIRALRAAYN-NPERAVEYLYS 212 (364)
Q Consensus 171 ~~e~~V~~i~~MG~~~f~r~qv~~ALrAafn-NpdRAvEyL~~ 212 (364)
..-++++.|++|| |+++-|++||+..-| ..+-|+|||.-
T Consensus 8 vn~qmlq~L~eMG---Fd~erae~Alk~Tg~~Gle~AmewL~k 47 (54)
T 2cos_A 8 VNRQMLQELVNAG---CDQEMAGRALKQTGSRSIEAALEYISK 47 (54)
T ss_dssp CCHHHHHHHHHHH---CCHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred hHHHHHHHHHHcC---CCHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 3567899999999 999999999999877 79999999973
No 154
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A
Probab=97.48 E-value=1.6e-05 Score=78.70 Aligned_cols=73 Identities=10% Similarity=0.132 Sum_probs=0.0
Q ss_pred EEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCChhhhccCCCCEEEEEEecCC
Q 017906 2 KVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSK 78 (364)
Q Consensus 2 kI~VKtl~gk~~~ieV~~s~TV~dLK~kI~~~~g~~~ip~~~qkLif~GkiL~D~~tL~d~gIk~~s~I~v~v~k~k 78 (364)
.|+|+. +|+.+.|.|..++++..||+..+++.| ++..+++|+|+|+.|.++.|.+++++.++++|.+++....
T Consensus 32 ~lkv~~-~~~~~~~~i~~~~~~~~l~~~y~~~~g---~~~~~~~f~f~G~~i~~~~Tp~~l~med~d~i~~~~~q~g 104 (389)
T 4da1_A 32 NLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQG---KEMDSLRFLYDGIRIQADQAPEDLDMEDNDIIEAHREQIG 104 (389)
T ss_dssp -----------------------------------------------------------------------------
T ss_pred EEEEec-CCcEEEEEECCCChHHHHHHHHHHHhC---CCcceEEEEECCEEcCCCCCHHHcCCCCCCEeeeeecccc
Confidence 466665 677788999999999999999999999 9999999999999999999999999999999999987654
No 155
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Probab=97.34 E-value=0.00018 Score=67.47 Aligned_cols=43 Identities=30% Similarity=0.431 Sum_probs=40.2
Q ss_pred cCCcchHHHHHHHHHcCCCCCCHHHHHHHHHHHcCChHHHHHHHHh
Q 017906 167 VAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYS 212 (364)
Q Consensus 167 ~~g~~~e~~V~~i~~MG~~~f~r~qv~~ALrAafnNpdRAvEyL~~ 212 (364)
+.+.+|++.|++|++|| |+|++|+.||+...+|-++|+|||+.
T Consensus 210 ~~~~~~~~~v~~l~~mg---f~~~~~~~al~~~nWd~~~A~e~L~~ 252 (253)
T 3e46_A 210 VSSPEYTKKIENLCAAG---FDRNAVIVALSSKSWDVETATELLLS 252 (253)
T ss_dssp CCCHHHHHHHHHHHHTT---CCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred cCcchHHHHHHHHHHcC---CCHHHHHHHHHHcCCCHHHHHHHHhc
Confidence 44678999999999999 99999999999999999999999985
No 156
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=97.31 E-value=0.00085 Score=52.10 Aligned_cols=68 Identities=18% Similarity=0.246 Sum_probs=57.8
Q ss_pred EEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEE--eCCeec---CCCCChhhhccCCCCEEEEE
Q 017906 2 KVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLI--HQGKVL---KDVTTLEENKVAENSFVVVM 73 (364)
Q Consensus 2 kI~VKtl~gk~~~ieV~~s~TV~dLK~kI~~~~g~~~ip~~~qkLi--f~GkiL---~D~~tL~d~gIk~~s~I~v~ 73 (364)
+|.||..+|+.+.-....++||.+|+..|.. .+ +.....+|+ |-.|.| +.+++|+++|+....+|+|-
T Consensus 9 ~i~iRlpdG~r~~~~F~~~~tl~~v~~fv~~-~~---~~~~~f~L~t~fPrk~l~~~d~~~TL~e~gL~p~a~L~ve 81 (84)
T 3qx1_A 9 KLRIRTPSGEFLERRFLASNKLQIVFDFVAS-KG---FPWDEYKLLSTFPRRDVTQLDPNKSLLEVKLFPQETLFLE 81 (84)
T ss_dssp EEEEECTTSCEEEEEEETTSBHHHHHHHHHH-TT---CCTTTEEEECSSSCCBGGGSCTTSBTTTTTCCSEEEEEEE
T ss_pred EEEEECCCCCEEEEEeCCCCCHHHHHHHHHH-cC---CCCCCeEEEeCCCCCCCcCCCCCCCHHHCCCCCCCEEEEE
Confidence 6889999999888888999999999999988 56 667888998 567888 34789999999988888764
No 157
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=97.25 E-value=0.0027 Score=51.91 Aligned_cols=71 Identities=13% Similarity=0.209 Sum_probs=59.7
Q ss_pred EEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEE--eCCeecC--C-CCChhhhccCCCCEEEEEEe
Q 017906 2 KVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLI--HQGKVLK--D-VTTLEENKVAENSFVVVMLT 75 (364)
Q Consensus 2 kI~VKtl~gk~~~ieV~~s~TV~dLK~kI~~~~g~~~ip~~~qkLi--f~GkiL~--D-~~tL~d~gIk~~s~I~v~v~ 75 (364)
+|.||..+|+.+.-.+..++||.+|+..|....+ .+.....|+ |-.|.|. | +++|+++|+....+|+|...
T Consensus 15 ~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~---~~~~~f~L~t~fPrk~l~~~d~~~TL~elgL~psa~L~v~~~ 90 (109)
T 2dzk_A 15 RIQFRLPDGSSFTNQFPSDAPLEEARQFAAQTVG---NTYGNFSLATMFPRREFTREDYKRRLLDLELAPSASVVLLPA 90 (109)
T ss_dssp EEEEECSSSCEEEEEECTTSBHHHHHHHHHHHHT---TSSCSCEEECSSSCCBCCTTTTTSBTGGGTCSSEEEEEEECC
T ss_pred EEEEECCCCCEEEEEeCCCCCHHHHHHHHHhccC---CCCCceEEEcCCCCcCCcccccCCCHHHCCCCCceEEEEEEC
Confidence 6889999999999999999999999999999877 556777886 6788886 3 68999999998877766543
No 158
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=96.71 E-value=0.0038 Score=52.21 Aligned_cols=68 Identities=22% Similarity=0.363 Sum_probs=58.1
Q ss_pred EEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEE--eCCeec--CC-CCChhhhccCCCCEEEEE
Q 017906 2 KVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLI--HQGKVL--KD-VTTLEENKVAENSFVVVM 73 (364)
Q Consensus 2 kI~VKtl~gk~~~ieV~~s~TV~dLK~kI~~~~g~~~ip~~~qkLi--f~GkiL--~D-~~tL~d~gIk~~s~I~v~ 73 (364)
+|.||..+|+.+.-.+..++||.+|...|... + +.....+|+ |-.|.| .| +++|.++|+.....|+|.
T Consensus 45 ~IqIRlPdG~rl~~rF~~~~tl~~V~~fV~~~-~---~~~~~F~L~t~fPrk~l~~~d~~~TL~e~gL~psa~Liv~ 117 (124)
T 1wj4_A 45 QLMLRYPDGKREQITLPEQAKLLALVKHVQSK-G---YPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQ 117 (124)
T ss_dssp EEEEECTTSCEEEEEEETTSCHHHHHHHHHHH-H---CCTTTEEEECSSSCCEETSSCSSSCTTTTTCCSSBCCEEE
T ss_pred EEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-C---CCCCCeEEecCCCCcCCccCCCCCCHHHCCCCCceEEEEE
Confidence 68899999998888999999999999999886 6 667788887 668888 34 799999999988877765
No 159
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2
Probab=96.41 E-value=0.023 Score=46.20 Aligned_cols=68 Identities=16% Similarity=0.145 Sum_probs=56.5
Q ss_pred EEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEE--eCCeecC--CCCChhhhccCCCCEEEEE
Q 017906 2 KVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLI--HQGKVLK--DVTTLEENKVAENSFVVVM 73 (364)
Q Consensus 2 kI~VKtl~gk~~~ieV~~s~TV~dLK~kI~~~~g~~~ip~~~qkLi--f~GkiL~--D~~tL~d~gIk~~s~I~v~ 73 (364)
+|.||..+|+.+.-.+..++||.+|...|... + +.....+|+ |-.|.|. .+++|+++||....+|+|-
T Consensus 25 ~IqiRlpdG~r~~rrF~~~~tl~~v~~fv~~~-~---~~~~~f~L~t~fPrk~l~~d~~~TL~e~gL~p~a~L~Ve 96 (109)
T 2cr5_A 25 TVALRCPNGRVLRRRFFKSWNSQVLLDWMMKV-G---YHKSLYRLSTSFPRRALEVEGGSSLEDIGITVDTVLNVE 96 (109)
T ss_dssp EEEEECTTSCEEEEEEESSSBTHHHHHHHHHH-T---CCTTTEEEECSSSCCBCCCCSSCBHHHHTCSSCEEEEEE
T ss_pred EEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-C---CCCCCeEEEeCCCCcCCCCCCCCCHHHcCCCCCeEEEEE
Confidence 68899999998888888999999999999965 4 456778886 6678886 3789999999988777664
No 160
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A
Probab=96.28 E-value=0.015 Score=48.69 Aligned_cols=66 Identities=18% Similarity=0.286 Sum_probs=54.1
Q ss_pred EEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEE--eCCeecCC-CCChhhhccCCCCE
Q 017906 2 KVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLI--HQGKVLKD-VTTLEENKVAENSF 69 (364)
Q Consensus 2 kI~VKtl~gk~~~ieV~~s~TV~dLK~kI~~~~g~~~ip~~~qkLi--f~GkiL~D-~~tL~d~gIk~~s~ 69 (364)
+|.||..+|+.+.-.+..++||.+|+..|..... + +......|+ |-.|.|.| +++|+++|+.+...
T Consensus 54 ~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~-~-~~~~~f~L~t~fPrk~l~d~~~TL~eagL~psav 122 (127)
T 1s3s_G 54 NIQIRLADGGRLVQKFNHSHRISDIRLFIVDARP-A-MAATSFVLMTTFPNKELADENQTLKEANLLNAVI 122 (127)
T ss_dssp CEEEEETTTTEEEEECCSSCBHHHHHHHHHHHCS-G-GGTSCEEEEETTTTEECCSTTCBHHHHTCSSCEE
T ss_pred EEEEECCCCCEEEEEeCCCCCHHHHHHHHHHhCc-C-CCCCCeEEecCCCCCCCCCCCCcHHHCCCcCceE
Confidence 5889999999998899999999999999998642 0 445677886 67899975 69999999997433
No 161
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=95.93 E-value=0.0076 Score=44.00 Aligned_cols=39 Identities=28% Similarity=0.356 Sum_probs=36.9
Q ss_pred hHHHHHHHHHc--CCCCCCHHHHHHHHHHHcCChHHHHHHHHhC
Q 017906 172 LEATVQQILDM--GGGSWDRETVIRALRAAYNNPERAVEYLYSG 213 (364)
Q Consensus 172 ~e~~V~~i~~M--G~~~f~r~qv~~ALrAafnNpdRAvEyL~~G 213 (364)
.|+.|..|.+| . ++++.|+..|++.-||.|+|++.|+.-
T Consensus 9 ~ee~l~~L~emFP~---ld~~~I~~vL~a~~gdvd~aI~~LL~m 49 (59)
T 1wgl_A 9 SEEDLKAIQDMFPN---MDQEVIRSVLEAQRGNKDAAINSLLQM 49 (59)
T ss_dssp CHHHHHHHHHHCSS---SCHHHHHHHHTTTTTCHHHHHHHHHHS
T ss_pred CHHHHHHHHHHCCC---CCHHHHHHHHHHcCCCHHHHHHHHHcC
Confidence 68999999999 6 899999999999999999999999976
No 162
>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii}
Probab=95.85 E-value=0.0014 Score=60.00 Aligned_cols=41 Identities=24% Similarity=0.293 Sum_probs=0.0
Q ss_pred chHHHHHHHHHcCCCCCCHHHHHHHHHHHcCChHHHHHHHHhCC
Q 017906 171 NLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGI 214 (364)
Q Consensus 171 ~~e~~V~~i~~MG~~~f~r~qv~~ALrAafnNpdRAvEyL~~GI 214 (364)
.+++.|+++++|| |+|++|++||+..-.+.++|+|.|+.|+
T Consensus 176 ~~~~~v~~~~~mg---f~~~~~~~al~~~~~~~~~~~~~l~~~~ 216 (216)
T 2pwq_A 176 PREVIIKKITEMG---FSEDQAKNALIKANWNETLALNTLLENS 216 (216)
T ss_dssp --------------------------------------------
T ss_pred chhhHHHHHHHcC---CCHHHHHHHHHHcCCchHHHHHHHhcCC
Confidence 4588999999999 9999999999999999999999999884
No 163
>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.60 E-value=0.049 Score=42.53 Aligned_cols=70 Identities=14% Similarity=0.208 Sum_probs=59.4
Q ss_pred EEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEe---CCeecCCCCChhhhccCCCCEEEEEEecC
Q 017906 2 KVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIH---QGKVLKDVTTLEENKVAENSFVVVMLTKS 77 (364)
Q Consensus 2 kI~VKtl~gk~~~ieV~~s~TV~dLK~kI~~~~g~~~ip~~~qkLif---~GkiL~D~~tL~d~gIk~~s~I~v~v~k~ 77 (364)
++.|.....+++.+.|++..++.+|--.|+++.. +.++...|.. .+..|+-+++|.||||++ ++.+-.++
T Consensus 12 RLvVNy~~tQKtVvRVSP~vpL~ellp~IC~Kce---fdp~~~~Ll~d~~~~e~LdLskSLndlgirE---Lya~d~~~ 84 (91)
T 2daj_A 12 RVVINFKKTQKTIVRVSPHASLQELAPIICSKCE---FDPLHTLLLKDYQSQEPLDLTKSLNDLGLRE---LYAMDVNR 84 (91)
T ss_dssp EEEEEETTTEEEEEEECSSSCTTTHHHHHHHHTT---CCTTSEEEESCSSCCCBCCTTSCHHHHTCSE---EEEEECCC
T ss_pred EEEEeecCcceeEEEeCCCCcHHHHHHHHhhccc---CChhhEEEecCCCCCcccchhcchhhhhhhh---hheecccc
Confidence 5677777788899999999999999999999987 8888888874 456788899999999997 77766555
No 164
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=95.33 E-value=0.024 Score=39.82 Aligned_cols=39 Identities=15% Similarity=0.236 Sum_probs=36.0
Q ss_pred hHHHHHHHHHc--CCCCCCHHHHHHHHHHHcCChHHHHHHHHhC
Q 017906 172 LEATVQQILDM--GGGSWDRETVIRALRAAYNNPERAVEYLYSG 213 (364)
Q Consensus 172 ~e~~V~~i~~M--G~~~f~r~qv~~ALrAafnNpdRAvEyL~~G 213 (364)
-+..|+.|+|| . -+++.|.++|+++-+|.|||+..|+++
T Consensus 4 ~e~~v~~L~EMFP~---~~~~~ik~~L~~~~Gd~d~Ai~~LL~~ 44 (49)
T 1otr_A 4 HESKLSILMDMFPA---ISKSKLQVHLLENNNDLDLTIGLLLKE 44 (49)
T ss_dssp HHHHHHHHHHHCSS---SCHHHHHHHHHHTTTCSHHHHHHHHHH
T ss_pred hHHHHHHHHHHCCC---CCHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 47889999999 4 599999999999999999999999987
No 165
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=95.30 E-value=0.05 Score=41.23 Aligned_cols=60 Identities=17% Similarity=0.246 Sum_probs=46.8
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCChhhhccCCCCEEEEE
Q 017906 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVM 73 (364)
Q Consensus 1 MkI~VKtl~gk~~~ieV~~s~TV~dLK~kI~~~~g~~~ip~~~qkLif~GkiL~D~~tL~d~gIk~~s~I~v~ 73 (364)
|+|+||....+...+++....||.+|-++ .| ++++..-+..||+++..+. +.+||.|.++
T Consensus 1 M~v~Vkl~g~~~~~~ev~~g~Tv~dLL~~----Lg---l~~~~VvV~vNG~~v~~d~------~l~GD~VeIv 60 (74)
T 2l32_A 1 MNVTVEVVGEETSEVAVDDDGTYADLVRA----VD---LSPHEVTVLVDGRPVPEDQ------SVEVDRVKVL 60 (74)
T ss_dssp CEEEEECSSSSEEEEECSTTCSHHHHHHT----TC---CCSSCCCEECCCCCCCTTS------SSCCCCEEEC
T ss_pred CEEEEEEeCccceeEEcCCCCcHHHHHHH----cC---CCcceEEEEECCEECCHHH------CCCCCEEEEE
Confidence 89999976444566899999999998765 67 8888888889999986555 2347877765
No 166
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.29 E-value=0.035 Score=41.52 Aligned_cols=45 Identities=13% Similarity=0.137 Sum_probs=39.1
Q ss_pred CCcchHHHHHHHHHcCCCCCCHHHHHHHHHHHcCChHHHHHHHHhC
Q 017906 168 AGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 213 (364)
Q Consensus 168 ~g~~~e~~V~~i~~MG~~~f~r~qv~~ALrAafnNpdRAvEyL~~G 213 (364)
.+.+++..|+.|.+|= -.++++-|+..|++.-+|.|+|++-|+.-
T Consensus 14 ~~~~~~~~v~~L~~MF-P~lD~~vI~~vL~a~~G~vd~aId~LL~m 58 (67)
T 2dhy_A 14 RRLEFNQAMDDFKTMF-PNMDYDIIECVLRANSGAVDATIDQLLQM 58 (67)
T ss_dssp CCCCSHHHHHHHHHHC-SSSCHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHC-CCCCHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 4567899999999991 11799999999999999999999999864
No 167
>4e71_A Plexin-B2, MM1; transmembrane, signaling, RBD, structural genomics consortium, SGC, signaling protein; 2.26A {Homo sapiens}
Probab=94.71 E-value=0.2 Score=41.02 Aligned_cols=64 Identities=20% Similarity=0.251 Sum_probs=46.2
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhCCCCCC------CCCeEEEe----CCeecCCC-------------CChhhhccCC
Q 017906 10 GTHFEIEVKPEDKVSDVKKNIETVQGSDVYP------ASQQMLIH----QGKVLKDV-------------TTLEENKVAE 66 (364)
Q Consensus 10 gk~~~ieV~~s~TV~dLK~kI~~~~g~~~ip------~~~qkLif----~GkiL~D~-------------~tL~d~gIk~ 66 (364)
+..+.+.|-..+||.++|+||-+..-+. +| ++.+.|-| .|++|.|. .||..|+|.+
T Consensus 23 ~~~i~vkVLdCDTItQvKeKiLd~vyk~-~pyS~rP~~~~~dLEwr~g~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~d 101 (111)
T 4e71_A 23 VDAIPVKVLNCDTISQVKEKIIDQVYRG-QPCSCWPRPDSVVLEWRPGSTAQILSDLDLTSQREGRWKRVNTLMHYNVRD 101 (111)
T ss_dssp CCCEEEEEETTCBHHHHHHHHHHHHTC----------CCSEEEEEC--CCCEECCSSCTTSCC---CCCCCBHHHHTCCT
T ss_pred CCceeeeeeccCcHHHHHHHHHHHHHcC-CccccCCCCCceeeEEecCCCCccccccCccceecCcceEecchhhcCCCC
Confidence 4467888889999999999999775332 33 34566665 35677652 3788999999
Q ss_pred CCEEEEEE
Q 017906 67 NSFVVVML 74 (364)
Q Consensus 67 ~s~I~v~v 74 (364)
|.+|.++-
T Consensus 102 gatl~l~~ 109 (111)
T 4e71_A 102 GATLILSK 109 (111)
T ss_dssp TCEEEEEE
T ss_pred CCEEEEEe
Confidence 99998753
No 168
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=94.69 E-value=0.024 Score=61.53 Aligned_cols=41 Identities=39% Similarity=0.670 Sum_probs=37.8
Q ss_pred cchHHHHHHHHHcCCCCCCHHHHHHHHHHHcCChHHHHHHHHhC
Q 017906 170 SNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 213 (364)
Q Consensus 170 ~~~e~~V~~i~~MG~~~f~r~qv~~ALrAafnNpdRAvEyL~~G 213 (364)
...++.|..|++|| |++++.++||++..||.+|||+||.+.
T Consensus 718 ~~~~e~i~~l~~mG---f~~~~a~~aL~~t~~~~eraidwlfs~ 758 (854)
T 3ihp_A 718 PPPEDCVTTIVSMG---FSRDQALKALRATNNSLERAVDWIFSH 758 (854)
T ss_dssp -CCHHHHHHHHTTT---CCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHcC---CCHHHHHHHHHhhcCcHHHHHHhhhcC
Confidence 34678999999999 999999999999999999999999986
No 169
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=94.55 E-value=0.11 Score=39.28 Aligned_cols=50 Identities=14% Similarity=0.341 Sum_probs=43.4
Q ss_pred cCCcchHHHHHHHHHc--CCCCCCHHHHHHHHHHHcCChHHHHHHHHhC-CCCCCC
Q 017906 167 VAGSNLEATVQQILDM--GGGSWDRETVIRALRAAYNNPERAVEYLYSG-IPEQTA 219 (364)
Q Consensus 167 ~~g~~~e~~V~~i~~M--G~~~f~r~qv~~ALrAafnNpdRAvEyL~~G-IP~~~~ 219 (364)
+.+.+.+..|.+|.++ - |....|.++|..-.+|+++.|.+|+.| +|.++.
T Consensus 8 ~~~~~l~s~I~qV~DLfPd---LG~gfi~~~L~~y~~nvE~vin~LLE~~LPp~L~ 60 (71)
T 2di0_A 8 MCGVELDSLISQVKDLLPD---LGEGFILACLEYYHYDPEQVINNILEERLAPTLS 60 (71)
T ss_dssp CSSHHHHHHHHHHHHHCCS---SCHHHHHHHHHHTTTCHHHHHHHHHTTCCCTTTT
T ss_pred CcHHHHHHHHHHHHHHccc---CCHHHHHHHHHHhCCCHHHHHHHHHccCCCHHHH
Confidence 4677899999999997 4 679999999999778999999999999 787653
No 170
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=94.42 E-value=0.23 Score=36.80 Aligned_cols=61 Identities=18% Similarity=0.270 Sum_probs=45.1
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCChhhhccCCCCEEEEEE
Q 017906 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVML 74 (364)
Q Consensus 1 MkI~VKtl~gk~~~ieV~~s~TV~dLK~kI~~~~g~~~ip~~~qkLif~GkiL~D~~tL~d~gIk~~s~I~v~v 74 (364)
|+|+|.--. ....+++....||.+|.+.+ + ++.....+..+|+++..+. -+++|+.|.++-
T Consensus 5 m~i~vNg~~-~~~~~~~~~~~tv~~Ll~~l----~---~~~~~v~vavN~~~v~~~~-----~L~~gD~V~ii~ 65 (70)
T 1ryj_A 5 MKFTVITDD-GKKILESGAPRRIKDVLGEL----E---IPIETVVVKKNGQIVIDEE-----EIFDGDIIEVIR 65 (70)
T ss_dssp EEEEEEETT-EEEEEEESSCCBHHHHHHHT----T---CCTTTEEEEETTEECCTTS-----BCCTTCEEEEEE
T ss_pred EEEEEeCcc-CceeEECCCCCcHHHHHHHh----C---CCCCCEEEEECCEECCCcc-----cCCCCCEEEEEe
Confidence 567766322 24567788889999999875 5 5567777889999997654 588899998863
No 171
>2r2o_A Plexin-B1; effector domain, structural genomics, structural GEN consortium, SGC, glycoprotein, membrane, phosphorylation, R secreted, transmembrane; 2.00A {Homo sapiens} PDB: 2rex_A* 2jph_A
Probab=94.38 E-value=0.16 Score=43.06 Aligned_cols=65 Identities=20% Similarity=0.225 Sum_probs=47.7
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHhCCCCCCC------CCeEEEe----CCe-ecCCC-------------CChhhhccCC
Q 017906 11 THFEIEVKPEDKVSDVKKNIETVQGSDVYPA------SQQMLIH----QGK-VLKDV-------------TTLEENKVAE 66 (364)
Q Consensus 11 k~~~ieV~~s~TV~dLK~kI~~~~g~~~ip~------~~qkLif----~Gk-iL~D~-------------~tL~d~gIk~ 66 (364)
..+.+.|-..|||.++|+||-+..-++ +|. +++-|-+ .|+ +|.|. .||..|+|.+
T Consensus 41 ~~i~VkVLdCDTItQvKeKiLDavYk~-~PySqRP~~~d~dLEwr~g~~g~liL~D~D~tS~~~~~wkrLNTL~HY~V~D 119 (138)
T 2r2o_A 41 QGVPVKVLDCDTISQAKEKMLDQLYKG-VPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVPD 119 (138)
T ss_dssp CCEEEEEETTCBHHHHHHHHHHHHTTT-SCGGGCCCGGGEEEEEECSSSCEEEECSSSTTCCEETTEEECCBHHHHTCCT
T ss_pred CceeEEEeccccHHHHHHHHHHHHHcC-CccccCCCccceeEEEecCCcCceEeeccCCcccccCCceeecchhccCCCC
Confidence 457888989999999999999887644 543 3445554 344 46653 2899999999
Q ss_pred CCEEEEEEec
Q 017906 67 NSFVVVMLTK 76 (364)
Q Consensus 67 ~s~I~v~v~k 76 (364)
|.+|.++-+.
T Consensus 120 ga~l~l~~~~ 129 (138)
T 2r2o_A 120 GATVALVPCL 129 (138)
T ss_dssp TCEEEEEEC-
T ss_pred CCEEEEEECC
Confidence 9999887544
No 172
>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2
Probab=93.86 E-value=0.093 Score=38.83 Aligned_cols=36 Identities=14% Similarity=0.177 Sum_probs=33.1
Q ss_pred HHHHHHHHHc-CCCCCCHHHHHHHHHHHcCChHHHHHHHH
Q 017906 173 EATVQQILDM-GGGSWDRETVIRALRAAYNNPERAVEYLY 211 (364)
Q Consensus 173 e~~V~~i~~M-G~~~f~r~qv~~ALrAafnNpdRAvEyL~ 211 (364)
.+.|..|.++ | +...+|..||..+.+|.+.|++||-
T Consensus 10 ~~~Vk~LRe~TG---ag~~dcKkAL~e~~GDi~~Ai~~Lr 46 (64)
T 2cp9_A 10 KELLMKLRRKTG---YSFVNCKKALETCGGDLKQAEIWLH 46 (64)
T ss_dssp CHHHHHHHHHHC---CCHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHHhC---CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 3579999997 7 8999999999999999999999996
No 173
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=93.42 E-value=0.41 Score=43.73 Aligned_cols=61 Identities=13% Similarity=0.249 Sum_probs=50.2
Q ss_pred EEEEeCCCCcHHHHHHHHHHHhCCCCCCCC-CeEEEe-C----CeecCC-CCChhhhccCCCCEEEEEEec
Q 017906 13 FEIEVKPEDKVSDVKKNIETVQGSDVYPAS-QQMLIH-Q----GKVLKD-VTTLEENKVAENSFVVVMLTK 76 (364)
Q Consensus 13 ~~ieV~~s~TV~dLK~kI~~~~g~~~ip~~-~qkLif-~----GkiL~D-~~tL~d~gIk~~s~I~v~v~k 76 (364)
+++.++..+||.+|+++++..++ ++.+ ..||-. . ...|.| +.+|.+++|.++..|+|=++.
T Consensus 154 ~~~~~Sk~~ti~~l~~~~~~~~~---i~~~~~~RLW~~~~~~~~~~L~~~~~tl~d~~L~~~Q~illE~r~ 221 (231)
T 3jyu_A 154 LSCHFSKADTIATIEKEMRKLFN---IPAERETRLWNKYMSNTYEQLSKLDNTIQDAGLYQGQVLVIEPQN 221 (231)
T ss_dssp EEEEECTTCBHHHHHHHHHHHTT---CCTTSCEEEEECSSSSSCEECCCTTSBTTTTTCCTTEEEEEEECC
T ss_pred EEEEecccCcHHHHHHHHHHHhC---CCCCCeEEEEEecCCCCHhhhcCCCCCHHHhCCCCCCEEEEEEec
Confidence 55778999999999999999999 8887 688853 2 245765 689999999999999887764
No 174
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=93.22 E-value=0.33 Score=43.95 Aligned_cols=62 Identities=13% Similarity=0.240 Sum_probs=50.6
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHhCCCCCCCC-CeEEE--e-CC--eecCC-CCChhhhccCCCCEEEEEEec
Q 017906 12 HFEIEVKPEDKVSDVKKNIETVQGSDVYPAS-QQMLI--H-QG--KVLKD-VTTLEENKVAENSFVVVMLTK 76 (364)
Q Consensus 12 ~~~ieV~~s~TV~dLK~kI~~~~g~~~ip~~-~qkLi--f-~G--kiL~D-~~tL~d~gIk~~s~I~v~v~k 76 (364)
.+++.++..+||.+|+++++..++ ++.+ ..||- | .+ ..|+| +++|.+++|.++..|+|=++.
T Consensus 141 ~~~~~~Sk~~ti~~l~~~~~~~~~---i~~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~Q~illE~r~ 209 (217)
T 4a3p_A 141 VVTRRFSKADTIDTIEKEIRKIFS---IPDEKETRLWNKYMSNTFEPLNKPDSTIQDAGLYQGQVLVIEQKN 209 (217)
T ss_dssp EEEEEECTTSBHHHHHHHHHHHTT---CCTTSCEEEEEEEETTEEEECCCTTSBHHHHTCCTTCEEEEEECC
T ss_pred ceEEEEcccchHHHHHHHHHHHhC---CCCCCceEEEEecCCCCeeecCCCCCCHHHhCCCCCCEEEEEEec
Confidence 366788999999999999999999 8886 68883 3 23 34666 679999999999999887764
No 175
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=93.06 E-value=0.57 Score=36.81 Aligned_cols=68 Identities=21% Similarity=0.291 Sum_probs=47.7
Q ss_pred CEEEEEeCC------C-cEEEEEeCCCCcHHHHHHHHHHHhCC--CCC------CCCCeEEEeCCeecCCCCChhhhccC
Q 017906 1 MKVFVKTLK------G-THFEIEVKPEDKVSDVKKNIETVQGS--DVY------PASQQMLIHQGKVLKDVTTLEENKVA 65 (364)
Q Consensus 1 MkI~VKtl~------g-k~~~ieV~~s~TV~dLK~kI~~~~g~--~~i------p~~~qkLif~GkiL~D~~tL~d~gIk 65 (364)
|+|+||.+. | ....+++....||.+|.+.+...... ..+ ......+..||+.+.. ++-|+
T Consensus 10 ~~v~V~~FA~lre~~g~~~~~~e~~~~~Tv~~Ll~~L~~~~p~l~~~l~~~~g~~~~~v~v~VNg~~v~~-----~~~L~ 84 (98)
T 1vjk_A 10 VKVKVKYFARFRQLAGVDEEEIELPEGARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVSW-----DEELK 84 (98)
T ss_dssp EEEEEEECTHHHHHHSSSEEEEEECTTCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCCT-----TCBCC
T ss_pred EEEEEEEhHHHHHHhCCCeEEEECCCCCCHHHHHHHHHhHChhHHHHhhccccccCCcEEEEECCEECCC-----CCCCC
Confidence 678888663 3 46778888889999999999877420 000 0234567789988753 55688
Q ss_pred CCCEEEEE
Q 017906 66 ENSFVVVM 73 (364)
Q Consensus 66 ~~s~I~v~ 73 (364)
+|+.|.++
T Consensus 85 dGDeV~i~ 92 (98)
T 1vjk_A 85 DGDVVGVF 92 (98)
T ss_dssp TTCEEEEE
T ss_pred CCCEEEEE
Confidence 99998876
No 176
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=92.16 E-value=0.38 Score=35.84 Aligned_cols=65 Identities=6% Similarity=0.183 Sum_probs=45.0
Q ss_pred CEEEEEeCCCc-EEEEEeCCCCcHHHHHHHHHHHhCCCCCCC--CCeEEEeCCeecCCCCChhhhccCCCCEEEEE
Q 017906 1 MKVFVKTLKGT-HFEIEVKPEDKVSDVKKNIETVQGSDVYPA--SQQMLIHQGKVLKDVTTLEENKVAENSFVVVM 73 (364)
Q Consensus 1 MkI~VKtl~gk-~~~ieV~~s~TV~dLK~kI~~~~g~~~ip~--~~qkLif~GkiL~D~~tL~d~gIk~~s~I~v~ 73 (364)
|+|+||.+..- .-.+++ ...||.+|++.+....+ +.. ....+..||+.+.+ .+.-+++|+.|.++
T Consensus 1 M~v~V~~fa~l~~~~~e~-~~~tv~~ll~~L~~~~~---l~~~l~~~~vavN~~~v~~----~~~~l~~gDeV~i~ 68 (74)
T 3rpf_C 1 MMVEVRFFGPIKEENFFI-KANDLKELRAILQEKEG---LKEWLGVCAIALNDHLIDN----LNTPLKDGDVISLL 68 (74)
T ss_dssp CEEEEEECTTCCCCCEEE-ECSSHHHHHHHHHTCTT---TTTTTTTCEEEESSSEECC----TTCCCCTTCEEEEE
T ss_pred CEEEEEEEeecceeEEee-CCCcHHHHHHHHHHCcC---HHHHhhccEEEECCEEcCC----CCcCCCCCCEEEEE
Confidence 88999977532 134666 56899999999986533 221 45667778887543 24458899999887
No 177
>3h6n_A Plexin-D1; structural genomics consortium, SGC, membrane, transmembrane, receptor, alternative splicing, cell membrane, glycoprotein, polymorphism; 2.00A {Homo sapiens}
Probab=91.80 E-value=0.85 Score=38.09 Aligned_cols=65 Identities=22% Similarity=0.300 Sum_probs=47.3
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhCCCCCC------CCCeEEEe----CCe-ecCCC-------------CChhhhccC
Q 017906 10 GTHFEIEVKPEDKVSDVKKNIETVQGSDVYP------ASQQMLIH----QGK-VLKDV-------------TTLEENKVA 65 (364)
Q Consensus 10 gk~~~ieV~~s~TV~dLK~kI~~~~g~~~ip------~~~qkLif----~Gk-iL~D~-------------~tL~d~gIk 65 (364)
+..+.+.|-..|||.++|+||-+..-+. +| ++.+.|-| .|+ +|.|. .||..|+|.
T Consensus 16 ~~~i~VkVLdCDTItQvKeKiLd~vyk~-~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~~krLNTL~HY~V~ 94 (127)
T 3h6n_A 16 MDSLSVRAMDTDTLTQVKEKILEAFCKN-VPYSQWPRAEDVDLEWFASSTQSYILRDLDDTSVVEDGRKKLNTLAHYKIP 94 (127)
T ss_dssp CCCEEEEEETTSBHHHHHHHHHHHHSTT-SCGGGSCCGGGEEEEEECSSSCEEECCSSSTTSCEETTEECCCBTTTTTCC
T ss_pred CCceeeeeeccCchhhhhHHHHHHHhcc-CCcccCCCCcccceEEecCCCCceEeecCCCcceecCceeEeccccccCCC
Confidence 4567888889999999999999875432 33 35666765 234 36552 478899999
Q ss_pred CCCEEEEEEe
Q 017906 66 ENSFVVVMLT 75 (364)
Q Consensus 66 ~~s~I~v~v~ 75 (364)
+|.+|.+..+
T Consensus 95 dgatv~l~~~ 104 (127)
T 3h6n_A 95 EGASLAMSLI 104 (127)
T ss_dssp TTCEEEEEEC
T ss_pred CCCEEEEEEc
Confidence 9999988744
No 178
>4e74_A Plexin-A4; RBD, structural genomics, structural genomics consor SGC, signaling protein; 1.58A {Homo sapiens} PDB: 3q3j_A*
Probab=91.32 E-value=0.65 Score=38.31 Aligned_cols=63 Identities=24% Similarity=0.357 Sum_probs=45.0
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHhCCCCCCC------CCeEEEe-CC---e-ecCCC-------------CChhhhccCCC
Q 017906 12 HFEIEVKPEDKVSDVKKNIETVQGSDVYPA------SQQMLIH-QG---K-VLKDV-------------TTLEENKVAEN 67 (364)
Q Consensus 12 ~~~ieV~~s~TV~dLK~kI~~~~g~~~ip~------~~qkLif-~G---k-iL~D~-------------~tL~d~gIk~~ 67 (364)
.+.+.|-..+||.++|+||-+..-+. +|. +.+.|-| .| + +|.|. .||..|+|.+|
T Consensus 28 ~i~VkVLdCDTItQvKeKiLd~vyk~-~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~dg 106 (117)
T 4e74_A 28 EVPVKILNCDTITQVKEKILDAIFKN-VPCSHRPKAADMDLEWRQGSGARMILQDEDITTKIENDWKRLNTLAHYQVPDG 106 (117)
T ss_dssp CEEEEEETTSBHHHHHHHHHHHHTTT-SCGGGSCCGGGEEEEEECTTSCEEEECSSSTTCCC---CCCCCBHHHHTCCTT
T ss_pred ceEeeeecCCchHHHHHHHHHHHhcC-CCcccCCCCCceeEEEecCCCCceEeecCCCccEecCcceEeccccccCCCCC
Confidence 47788889999999999999775332 433 3556654 23 3 35441 37899999999
Q ss_pred CEEEEEEe
Q 017906 68 SFVVVMLT 75 (364)
Q Consensus 68 s~I~v~v~ 75 (364)
.+|.++-+
T Consensus 107 atl~l~~~ 114 (117)
T 4e74_A 107 SVVALVSK 114 (117)
T ss_dssp CEEEEEEC
T ss_pred CEEEEEeC
Confidence 99988754
No 179
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=90.77 E-value=0.77 Score=44.40 Aligned_cols=71 Identities=13% Similarity=0.067 Sum_probs=54.2
Q ss_pred EEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCC-CCCCCCeEEEe------CCeecCCCCChhhhccCCCCEEEEE
Q 017906 2 KVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSD-VYPASQQMLIH------QGKVLKDVTTLEENKVAENSFVVVM 73 (364)
Q Consensus 2 kI~VKtl~gk~~~ieV~~s~TV~dLK~kI~~~~g~~-~ip~~~qkLif------~GkiL~D~~tL~d~gIk~~s~I~v~ 73 (364)
.+.|... +.+.++.++++.||.++.++|.++.... ..+.++--|.. +|+=|++.++|..|++.+++.|...
T Consensus 5 ~~~~~~~-~~~~~~~f~~~~~v~~~~~~i~e~~~~~~~~~~~~y~l~~~~~~~~~~~Wl~~~~~l~~y~~~~~~~l~~~ 82 (371)
T 3ivf_A 5 SLKISIG-NVVKTMQFEPSTMVYDACRMIRERIPEALAGPPNDFGLFLSDDDPKKGIWLEAGKALDYYMLRNGDTMEYR 82 (371)
T ss_dssp EEEEEET-TEEEEEEECTTCBHHHHHHHHHTTCGGGGSSCGGGEEEEECCSSGGGCEECCTTSBGGGGTCCTTCEEEEE
T ss_pred EEEEEec-ceeEEEEECCCCCHHHHHHHHHHhcccccCCCHHHCeEeccCCCCCcCEeccCCCCHHHhCCCCCceeecc
Confidence 3445543 6678899999999999999998886510 12456667766 4566888999999999999988765
No 180
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A
Probab=89.58 E-value=0.54 Score=36.60 Aligned_cols=44 Identities=14% Similarity=0.109 Sum_probs=33.2
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEE-eCC
Q 017906 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLI-HQG 50 (364)
Q Consensus 1 MkI~VKtl~gk~~~ieV~~s~TV~dLK~kI~~~~g~~~ip~~~qkLi-f~G 50 (364)
|||.|- .++..|-|.|..+.+..+||.||..+.. + +.+.|+ |++
T Consensus 13 ~KVK~y-y~DDIiAIrvP~di~~~~L~dKi~~RLk---~--~~~~l~~ykd 57 (85)
T 1ip9_A 13 TKIKFY-YKDDIFALMLKGDTTYKELRSKIAPRID---T--DNFKLQTKLF 57 (85)
T ss_dssp EEEEEC-BTTCCEEEEECSCCCHHHHHHHHHHHHT---S--SCEEEEECCS
T ss_pred eEEEEE-ecCcEEEEECCCCCCHHHHHHHHHHHhc---c--cceEEEEecC
Confidence 344444 3567899999999999999999999987 4 556554 443
No 181
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=89.15 E-value=2.6 Score=32.10 Aligned_cols=58 Identities=10% Similarity=0.168 Sum_probs=41.3
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHhCCC---CCC-----CCCeEEEeCCeecCCCCChhhhccCCCCEEEEE
Q 017906 11 THFEIEVKPEDKVSDVKKNIETVQGSD---VYP-----ASQQMLIHQGKVLKDVTTLEENKVAENSFVVVM 73 (364)
Q Consensus 11 k~~~ieV~~s~TV~dLK~kI~~~~g~~---~ip-----~~~qkLif~GkiL~D~~tL~d~gIk~~s~I~v~ 73 (364)
+...+++....||.+|++.+......- .+. .....+..||+.... ++-|++|+.|.++
T Consensus 18 ~~~~~~~~~~~Tv~~ll~~L~~~~p~~~~~~l~~~g~l~~~~~v~VN~~~v~~-----~~~l~~gDeV~i~ 83 (89)
T 3po0_A 18 RTVRVDVDGDATVGDALDALVGAHPALESRVFGDDGELYDHINVLRNGEAAAL-----GEATAAGDELALF 83 (89)
T ss_dssp SEEEEECCTTCBHHHHHHHHHHHCGGGHHHHBCTTSCBCTTSEEEETTEECCT-----TSBCCTTCEEEEE
T ss_pred CeEEEECCCCCcHHHHHHHHHHHCcHHHHHHhccCCcccccEEEEECCEECCC-----CcccCCCCEEEEE
Confidence 567888888899999999998875310 000 023577789988865 4458889999887
No 182
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=88.83 E-value=0.7 Score=35.83 Aligned_cols=45 Identities=11% Similarity=0.028 Sum_probs=37.8
Q ss_pred EEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCC
Q 017906 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQG 50 (364)
Q Consensus 3 I~VKtl~gk~~~ieV~~s~TV~dLK~kI~~~~g~~~ip~~~qkLif~G 50 (364)
++||-.-..++.|.|..+.+..+|+.+|.++.+ ++.+..+|.|+-
T Consensus 6 ~~VKV~~~~tvairvp~~~~y~~L~~~l~~kL~---l~~~~~~LsYk~ 50 (83)
T 1oey_A 6 YTLKVHYKYTVVMKTQPGLPYSQVRDMVSKKLE---LRLEHTKLSYRP 50 (83)
T ss_dssp EEEEEESSSEEEEEECTTCCHHHHHHHHHHHTT---CCGGGCCEEECC
T ss_pred EEEEEEEEEEEEEECCCCCCHHHHHHHHHHHhC---CCcceeEEEeeC
Confidence 344433347899999999999999999999999 888999999965
No 183
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Probab=87.97 E-value=2.1 Score=39.72 Aligned_cols=75 Identities=16% Similarity=0.135 Sum_probs=55.8
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEe---CCe--ecCCCCChhhhccCCCCEEEEEEe
Q 017906 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIH---QGK--VLKDVTTLEENKVAENSFVVVMLT 75 (364)
Q Consensus 1 MkI~VKtl~gk~~~ieV~~s~TV~dLK~kI~~~~g~~~ip~~~qkLif---~Gk--iL~D~~tL~d~gIk~~s~I~v~v~ 75 (364)
|.|.|..++| ++.|.|+...|+.+|-..|+...|. ...+-.-|.| +|. -|+.++.|.+.+++.+..+.+..+
T Consensus 2 i~~~V~l~d~-~~~~~v~~~tt~~el~~~v~~~l~L--~e~~~FgL~~~~~~~~~~wLd~~~~l~~q~~~~~~~~~l~fr 78 (294)
T 1ef1_A 2 ISVRVTTMDA-ELEFAIQPNTTGKQLFDQVVKTIGL--REVWFFGLQYQDTKGFSTWLKLNKKVTAQDVRKESPLLFKFR 78 (294)
T ss_dssp EEEEEEETTE-EEEEEECTTCBHHHHHHHHHHHHTC--CCGGGEEEEEEBTTSCEEECCSSSBGGGSCBCCCSSEEEEEE
T ss_pred EEEEEEECCc-eEEEEECCCCcHHHHHHHHHHHcCC--CCcceeEEEEECCCCceeecccccCHHhhccCCCCCEEEEEE
Confidence 4688888888 7889999999999999999999993 2233445555 343 377788898887766666666666
Q ss_pred cCC
Q 017906 76 KSK 78 (364)
Q Consensus 76 k~k 78 (364)
++-
T Consensus 79 ~kf 81 (294)
T 1ef1_A 79 AKF 81 (294)
T ss_dssp ESS
T ss_pred EEE
Confidence 543
No 184
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=87.95 E-value=0.68 Score=36.08 Aligned_cols=57 Identities=9% Similarity=0.239 Sum_probs=41.0
Q ss_pred CCCcEEEEEeCCC-CcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCChhhhccCCCCEEEEEE
Q 017906 8 LKGTHFEIEVKPE-DKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVML 74 (364)
Q Consensus 8 l~gk~~~ieV~~s-~TV~dLK~kI~~~~g~~~ip~~~qkLif~GkiL~D~~tL~d~gIk~~s~I~v~v 74 (364)
++|+. +++... .||.+|.+.+ + ++.....+..+|+++..+ ...+.-|++||.|.++-
T Consensus 25 vNGe~--~el~~~~~Tv~dLL~~L----~---~~~~~vaVavNg~iV~~~-~~~~~~L~dGD~Vei~~ 82 (87)
T 1tyg_B 25 LNGKD--VKWKKDTGTIQDLLASY----Q---LENKIVIVERNKEIIGKE-RYHEVELCDRDVIEIVH 82 (87)
T ss_dssp ETTEE--ECCSSSCCBHHHHHHHT----T---CTTSCCEEEETTEEECGG-GTTTSBCCSSSEEEEEE
T ss_pred ECCEE--EECCCCCCcHHHHHHHh----C---CCCCCEEEEECCEECChh-hcCCcCCCCCCEEEEEc
Confidence 35665 445665 8999998875 5 556777888999998532 34455689999998873
No 185
>4dbg_B Ring finger protein 31; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens}
Probab=87.85 E-value=0.35 Score=41.86 Aligned_cols=38 Identities=24% Similarity=0.203 Sum_probs=32.4
Q ss_pred hHHHHHHHHHcCCCCCCHHHHHHHHHHHcCChHHHHHHHH
Q 017906 172 LEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLY 211 (364)
Q Consensus 172 ~e~~V~~i~~MG~~~f~r~qv~~ALrAafnNpdRAvEyL~ 211 (364)
+...|.+|++.| -|+|++|+.||+.+-.|.++|+--|-
T Consensus 102 R~~K~~eL~s~G--~~~~~~~~~aL~~~~Gdv~~Al~eLq 139 (162)
T 4dbg_B 102 RRRKVQELQSLG--FGPEEGSLQALFQHGGDVSRALTELQ 139 (162)
T ss_dssp HHHHHHHHHHTT--CCGGGTHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHHhcC--CchHHHHHHHHHHcCCcHHHHHHHHH
Confidence 456788899999 33999999999999999999996663
No 186
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Probab=87.36 E-value=2.4 Score=39.84 Aligned_cols=74 Identities=15% Similarity=0.053 Sum_probs=55.1
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEe--CCe--ecCCCCChhhhccCCCCEEEEEEec
Q 017906 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIH--QGK--VLKDVTTLEENKVAENSFVVVMLTK 76 (364)
Q Consensus 1 MkI~VKtl~gk~~~ieV~~s~TV~dLK~kI~~~~g~~~ip~~~qkLif--~Gk--iL~D~~tL~d~gIk~~s~I~v~v~k 76 (364)
|.+.|..++| ++.|.|+.+.|+.+|-..|+...|. ...+-.-|.| +|. -|+.++.|.+.+++.+..+.+..++
T Consensus 23 ~~~~V~lldg-~~~~~v~~~t~~~el~~~v~~~l~L--~e~~~FgL~~~~~~~~~wL~~~~~i~~q~~~~~~~~~l~fr~ 99 (314)
T 1h4r_A 23 FTVRIVTMDA-EMEFNCEMKWKGKDLFDLVCRTLGL--RETWFFGLQYTIKDTVAWLKMDKKVLDHDVSKEEPVTFHFLA 99 (314)
T ss_dssp EEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTC--CCGGGEEEEEEETTEEEECCTTSBGGGSSCCCSSSEEEEEEE
T ss_pred eEEEEEeCCc-eEEEEeCCCCcHHHHHHHHHHHhCC--CCCccceEEEEeCCcCeeCCCccCHHHcCCCCCCCEEEEEEE
Confidence 3578888898 7889999999999999999999993 2234445555 443 3788889998877666666666655
Q ss_pred C
Q 017906 77 S 77 (364)
Q Consensus 77 ~ 77 (364)
+
T Consensus 100 k 100 (314)
T 1h4r_A 100 K 100 (314)
T ss_dssp S
T ss_pred E
Confidence 4
No 187
>2juo_A GA-binding protein alpha chain; OST, ubiquitin, transcription factor, ensemble, DNA-binding, nucleus, transcription regulation; NMR {Mus musculus}
Probab=87.26 E-value=1.7 Score=33.72 Aligned_cols=61 Identities=13% Similarity=0.126 Sum_probs=52.2
Q ss_pred EEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCChhhhccCCCCEEEEEEec
Q 017906 13 FEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTK 76 (364)
Q Consensus 13 ~~ieV~~s~TV~dLK~kI~~~~g~~~ip~~~qkLif~GkiL~D~~tL~d~gIk~~s~I~v~v~k 76 (364)
+.-.++-..++..||+.++.+.+ +.-+.-.+...+..|+++++|.|-+|+-...|.+.+--
T Consensus 5 i~qhmDI~epL~~Lk~LLe~Rl~---i~L~~y~f~LQd~~L~~~k~LvdQcVqgeGlVQinvqi 65 (89)
T 2juo_A 5 VSQAIDINEPIGNLKKLLEPRLQ---CSLDAHEICLQDIQLDPDRSLFDQGVKTDGTVQLSVQV 65 (89)
T ss_dssp EEEEEESSSBGGGHHHHSHHHHC---SCCSSCEEEETTEECCTTSBTTTSSCCCCSEEEEEEEE
T ss_pred hhhhccccCcHHHHHHHHHHHhc---CCcccCeEEeeccccCCCccHHHhhcccccEEEEEEEE
Confidence 34456667899999999999999 77888888888888999999999999988888887654
No 188
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=87.22 E-value=0.43 Score=51.75 Aligned_cols=42 Identities=21% Similarity=0.385 Sum_probs=37.1
Q ss_pred hHHHHHHHHHcCCCCCCHHHHHHHHHHHcCC-hHHHHHHHHhCCCC
Q 017906 172 LEATVQQILDMGGGSWDRETVIRALRAAYNN-PERAVEYLYSGIPE 216 (364)
Q Consensus 172 ~e~~V~~i~~MG~~~f~r~qv~~ALrAafnN-pdRAvEyL~~GIP~ 216 (364)
.+..|+.|++|| |++..+++||.+.-|+ .++|++||+..+-+
T Consensus 652 d~~~l~~L~~mG---f~~~~~~kal~~t~n~~~e~a~~wl~~hmdd 694 (854)
T 3ihp_A 652 DESVIIQLVEMG---FPMDACRKAVYYTGNSGAEAAMNWVMSHMDD 694 (854)
T ss_dssp -CHHHHHHHHHT---CCHHHHHHHHHHTTSCCHHHHHHHHHHHTTS
T ss_pred CHHHHHHHHhcC---CCHHHHHHHHhhcCCCchHHHhHHHhhccCc
Confidence 467899999999 9999999999999876 99999999987643
No 189
>2llw_A Heat shock protein STI1; DP domain, alpha helix, chaperone; NMR {Saccharomyces cerevisiae}
Probab=86.35 E-value=0.7 Score=34.73 Aligned_cols=36 Identities=28% Similarity=0.445 Sum_probs=21.8
Q ss_pred hhhCcHHHHHHHHHHHhCccchHHHHHHHhhhCHHHHHHHH
Q 017906 279 FLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQ 319 (364)
Q Consensus 279 ~Lr~~pqf~~lR~~vq~nP~~L~~~Lqql~~~nP~L~~~I~ 319 (364)
.+.++|+|+++=+-+++||..+..++. ||.++..|+
T Consensus 24 ~im~DP~~~~~lq~~~~NP~~~~k~~~-----nP~v~~~i~ 59 (71)
T 2llw_A 24 AIMQDPVMQSILQQAQQNPAALQEHMK-----NPEVFKKIQ 59 (71)
T ss_dssp HHHTCTHHHHHHHHHHHCHHHHHHHHH-----SHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHCHHHHHHHHh-----CHHHHHHHH
Confidence 345666666666666666666666543 666666654
No 190
>1q02_A Sequestosome 1; helical bundle, protein binding; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 2jy7_A 2jy8_A 2k0b_X 2knv_A 2rru_A 3b0f_A
Probab=86.05 E-value=0.67 Score=32.65 Aligned_cols=38 Identities=24% Similarity=0.386 Sum_probs=32.6
Q ss_pred chHHHHHHHHHcCCCCCCHHH--HHHHHHHHcCChHHHHHHHH
Q 017906 171 NLEATVQQILDMGGGSWDRET--VIRALRAAYNNPERAVEYLY 211 (364)
Q Consensus 171 ~~e~~V~~i~~MG~~~f~r~q--v~~ALrAafnNpdRAvEyL~ 211 (364)
..++.|.+|++|| |+-+- ..+.|.+..+|-.+|++-|-
T Consensus 9 rl~~al~qMl~MG---F~negGWLt~LL~~k~gDI~~aLD~lq 48 (52)
T 1q02_A 9 RLIESLSQMLSMG---FSDEGGWLTRLLQTKNYDIGAALDTIQ 48 (52)
T ss_dssp HHHHHHHHHHTTT---CCCTTSHHHHHHHHTTTCHHHHHHHHT
T ss_pred HHHHHHHHHHHcC---CCccccHHHHHHHHccCCHHHHHHHhh
Confidence 4789999999999 96554 46999999999999999873
No 191
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=85.55 E-value=1.8 Score=31.52 Aligned_cols=62 Identities=18% Similarity=0.078 Sum_probs=41.7
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCChhhhccCCCCEEEEEE
Q 017906 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVML 74 (364)
Q Consensus 1 MkI~VKtl~gk~~~ieV~~s~TV~dLK~kI~~~~g~~~ip~~~qkLif~GkiL~D~~tL~d~gIk~~s~I~v~v 74 (364)
|+|+|+..+|+. +++....|+.+|-+.|....+ ....-...+|++.+-+ +-|++|+.|.++-
T Consensus 1 m~i~i~~p~g~~--~~~~~g~T~~dla~~i~~~l~-----~~~vaa~vNg~lvdl~-----~~L~~~~~Veivt 62 (73)
T 2kmm_A 1 MEVMVFTPKGEI--KRLPQGATALDFAYSLHSDLG-----DHCIGAKVNHKLVPLS-----YVLNSGDQVEVLS 62 (73)
T ss_dssp CCEEEECTTCCE--EEECTTCBHHHHHHHHCSHHH-----HTEEEEEETTEECCTT-----CBCCSSSBEEEEE
T ss_pred CeEEEEcCCCCE--EEcCCCCcHHHHHHHHhhccc-----cceEEEEECCEEeCCC-----cCcCCCCEEEEEE
Confidence 788998778876 456678999999888754432 1223334689877654 4456778777764
No 192
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=85.18 E-value=0.83 Score=34.24 Aligned_cols=60 Identities=13% Similarity=0.184 Sum_probs=43.7
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCChhhhccCCCCEEEEEE
Q 017906 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVML 74 (364)
Q Consensus 1 MkI~VKtl~gk~~~ieV~~s~TV~dLK~kI~~~~g~~~ip~~~qkLif~GkiL~D~~tL~d~gIk~~s~I~v~v 74 (364)
|+|+| +|+.+.+ ...||.+|.+. .+ +++...-+.++|.++.. ....++-+++||.|-++-
T Consensus 1 M~I~v---NG~~~e~---~~~Tl~~LL~~----l~---~~~~~vAV~vNg~iVpr-~~~~~~~L~dGD~veIv~ 60 (73)
T 2kl0_A 1 MLVTI---NGEQREV---QSASVAALMTE----LD---CTGGHFAVALNYDVVPR-GKWDETPVTAGDEIEILT 60 (73)
T ss_dssp CCEEE---TTEEECC---CCSBHHHHHHH----TT---CCSSSCEEEESSSEECH-HHHTTCBCCTTCEEEEEC
T ss_pred CEEEE---CCEEEEc---CCCcHHHHHHH----cC---CCCCcEEEEECCEECCh-HHcCcccCCCCCEEEEEc
Confidence 56655 4776554 56899998774 56 77788888899998853 234556789999998874
No 193
>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A
Probab=85.17 E-value=2.3 Score=32.67 Aligned_cols=71 Identities=13% Similarity=0.108 Sum_probs=44.1
Q ss_pred CEEEEEeCC------CcEEEEEeCCCCcHHHHHHHHHHHhCCC--CC-C-------CCCeEEEeCCeecCCCCChhhhcc
Q 017906 1 MKVFVKTLK------GTHFEIEVKPEDKVSDVKKNIETVQGSD--VY-P-------ASQQMLIHQGKVLKDVTTLEENKV 64 (364)
Q Consensus 1 MkI~VKtl~------gk~~~ieV~~s~TV~dLK~kI~~~~g~~--~i-p-------~~~qkLif~GkiL~D~~tL~d~gI 64 (364)
|+|+|+.+. |+...++++ ..||.+|+..+..++..- .+ . .....+..||+...+..- .+.-|
T Consensus 1 M~v~V~~fa~lr~~~g~~~~~~~~-~~Tv~~ll~~L~~~~p~l~~~l~~~~~~g~~~~~~~v~VN~~~v~~~~~-~~~~L 78 (93)
T 3dwg_C 1 MNVTVSIPTILRPHTGGQKSVSAS-GDTLGAVISDLEANYSGISERLMDPSSPGKLHRFVNIYVNDEDVRFSGG-LATAI 78 (93)
T ss_dssp -CEEEECCGGGGGGTTTCSEEEEC-CSBHHHHHHHHHHHSTTHHHHHBCSSSTTSBCTTEEEEETTEEGGGTTG-GGCBC
T ss_pred CEEEEEEeHHHHHHhCCCeEEecC-CCCHHHHHHHHHHHChhHHHHHhccccCCcccCCEEEEECCEEccCcCC-CCcCC
Confidence 788888542 433346654 579999999998875310 00 0 113566778887754222 24568
Q ss_pred CCCCEEEEE
Q 017906 65 AENSFVVVM 73 (364)
Q Consensus 65 k~~s~I~v~ 73 (364)
++|+.|.++
T Consensus 79 ~~gDeV~i~ 87 (93)
T 3dwg_C 79 ADGDSVTIL 87 (93)
T ss_dssp CTTCEEEEE
T ss_pred CCCCEEEEE
Confidence 999999887
No 194
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=84.68 E-value=0.97 Score=34.34 Aligned_cols=63 Identities=16% Similarity=0.219 Sum_probs=44.7
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCC-CCCeEEEeCCeecCCCCChhhhccCCCCEEEEEE
Q 017906 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYP-ASQQMLIHQGKVLKDVTTLEENKVAENSFVVVML 74 (364)
Q Consensus 1 MkI~VKtl~gk~~~ieV~~s~TV~dLK~kI~~~~g~~~ip-~~~qkLif~GkiL~D~~tL~d~gIk~~s~I~v~v 74 (364)
|+|+| +|+.+.+......||.+|.+. .+ ++ ....-+.++|.++.. ....++-+++||.|-++-
T Consensus 1 M~I~v---NGe~~e~~~~~~~Tl~~LL~~----l~---~~~~~~vAVavNg~iVpr-~~~~~~~L~dGD~IEIv~ 64 (78)
T 2k5p_A 1 MNLTV---NGKPSTVDGAESLNVTELLSA----LK---VAQAEYVTVELNGEVLER-EAFDATTVKDGDAVEFLY 64 (78)
T ss_dssp CEEEE---TTEEEECSSCSCEEHHHHHHH----HT---CSCTTTCCEEETTEECCT-THHHHCEECSSBCEEECC
T ss_pred CEEEE---CCEEEEcCCCCCCcHHHHHHH----cC---CCCCCcEEEEECCEECCh-HHcCcccCCCCCEEEEEe
Confidence 66665 477654432156899999875 46 66 677778899999854 346667789999998763
No 195
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=84.48 E-value=1.4 Score=31.99 Aligned_cols=60 Identities=7% Similarity=0.214 Sum_probs=42.2
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCChhhhccCCCCEEEEE
Q 017906 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVM 73 (364)
Q Consensus 1 MkI~VKtl~gk~~~ieV~~s~TV~dLK~kI~~~~g~~~ip~~~qkLif~GkiL~D~~tL~d~gIk~~s~I~v~ 73 (364)
|+|+| +|+.+ ++....||.+|.+.+ + ++.....+..+|+++..+ ...+.-+++|+.|.++
T Consensus 1 m~i~v---Ng~~~--~~~~~~tv~~ll~~l----~---~~~~~v~vavN~~~v~~~-~~~~~~L~~gD~v~i~ 60 (66)
T 1f0z_A 1 MQILF---NDQAM--QCAAGQTVHELLEQL----D---QRQAGAALAINQQIVPRE-QWAQHIVQDGDQILLF 60 (66)
T ss_dssp CCEEE---SSCEE--CCCTTCCHHHHHHHH----T---CCCSSEEEEETTEEECHH-HHTTCCCCTTEEECEE
T ss_pred CEEEE---CCEEE--EcCCCCcHHHHHHHc----C---CCCCCEEEEECCEECCch-hcCCcCCCCCCEEEEE
Confidence 55555 47654 556778999999876 5 556777888999988532 2234458889988876
No 196
>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A
Probab=84.27 E-value=1.1 Score=36.54 Aligned_cols=69 Identities=10% Similarity=0.055 Sum_probs=41.5
Q ss_pred CEEEEEeCC------C--cEEEEEeCC---CCcHHHHHHHHHHHhCCCCCCCCCeEEEeC-Ce------ecCCCCCh---
Q 017906 1 MKVFVKTLK------G--THFEIEVKP---EDKVSDVKKNIETVQGSDVYPASQQMLIHQ-GK------VLKDVTTL--- 59 (364)
Q Consensus 1 MkI~VKtl~------g--k~~~ieV~~---s~TV~dLK~kI~~~~g~~~ip~~~qkLif~-Gk------iL~D~~tL--- 59 (364)
|+|+|+... | +.+.|++.. ..||.+|...|.+.+. ..+.+|+.. |+ +|-|+..+
T Consensus 12 M~v~V~~~~~Lr~~~g~~~~~~vel~~~~~~~TV~~Ll~~L~~~~~-----~~~~~lf~~~g~lr~~i~VlVN~~di~~l 86 (114)
T 1wgk_A 12 LCVKVEFGGGAELLFDGVKKHQVALPGQEEPWDIRNLLVWIKKNLL-----KERPELFIQGDSVRPGILVLINDADWELL 86 (114)
T ss_dssp EEEEEEECTTTGGGTTTCSEEEEEECCCSSCCBHHHHHHHHTTTTC-----CSCHHHHCCSSSCCSSEEEEESSSBHHHH
T ss_pred cEEEEEEchHHHHHhCCceEEEEEeCCCCCCCCHHHHHHHHHHHcc-----chhHhhCccCCcccCCeEEEECCeeeecc
Confidence 678887543 3 356788873 3699999999987752 223233211 21 22233321
Q ss_pred --hhhccCCCCEEEEEE
Q 017906 60 --EENKVAENSFVVVML 74 (364)
Q Consensus 60 --~d~gIk~~s~I~v~v 74 (364)
.++-+++|+.|.++-
T Consensus 87 ~gldt~L~dGDeV~iip 103 (114)
T 1wgk_A 87 GELDYQLQDQDSILFIS 103 (114)
T ss_dssp CTTTCBCCSSEEEEEEE
T ss_pred CCcCcCCCCCCEEEEeC
Confidence 346799999987753
No 197
>2lnm_A Protein TIC 40, chloroplastic; translocon, import, TIC40-NP, protein transport; NMR {Arabidopsis thaliana}
Probab=84.21 E-value=0.96 Score=32.82 Aligned_cols=45 Identities=13% Similarity=0.187 Sum_probs=34.3
Q ss_pred hHhhhCcHHHHHHHHHHHhCccchHHHHHHHhhhCHHHHHHHHHCHHHHHHHhc
Q 017906 277 LDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLIN 330 (364)
Q Consensus 277 l~~Lr~~pqf~~lR~~vq~nP~~L~~~Lqql~~~nP~L~~~I~~n~e~Fl~~l~ 330 (364)
+..+.++|+|.+.=+-|++||..+..++ +||.+.+.|+ .++.++.
T Consensus 14 ~~~~m~dP~~~~~lq~i~~NP~~~~~~~-----~dP~v~~~~~----~L~~~~~ 58 (62)
T 2lnm_A 14 VAMAFQNPRVQAALMECSENPMNIMKYQ-----NDKEVMDVFN----KISQLFP 58 (62)
T ss_dssp HHHHTTSHHHHHHHHHHTTCGGGHHHHT-----TCHHHHHHHH----HHHHHSS
T ss_pred HHHHcCCHHHHHHHHHHHHCHHHHHHHH-----hChHHHHHHH----HHHHHhC
Confidence 4445588999999999999999887643 5999999884 3555553
No 198
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=83.37 E-value=3.2 Score=42.92 Aligned_cols=76 Identities=13% Similarity=0.089 Sum_probs=56.9
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeC---C--eecCCCCChhhhccCCCCEEEEEEe
Q 017906 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQ---G--KVLKDVTTLEENKVAENSFVVVMLT 75 (364)
Q Consensus 1 MkI~VKtl~gk~~~ieV~~s~TV~dLK~kI~~~~g~~~ip~~~qkLif~---G--kiL~D~~tL~d~gIk~~s~I~v~v~ 75 (364)
|.|.|..++| ++.|.|+.+.|+.+|-..|+...|. ...+-+-|.|. | ..|+.++.|.+.+++.+..+.+..+
T Consensus 5 i~v~V~llDg-t~e~~vd~~tt~~ell~~V~~~LgL--~e~~~FGL~~~d~~~~~~WLd~~k~i~~q~~~~~~~~~L~FR 81 (575)
T 2i1j_A 5 MNVRVTTMDA-ELEFAIQQTTTGKQLFDQVVKTIGL--REVWFFGLQYTDSKGDLTWIKLYKKVMQQDVKKENPLQFKFR 81 (575)
T ss_dssp EEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTC--CCGGGEEEEEEBTTSCEEECCTTSBGGGSCBCCCSSEEEEEE
T ss_pred EEEEEEeCCC-eEEEEECCCCCHHHHHHHHHHHcCC--CCccceeEEEEecCcchhHhhccccHHHhcccCCCCeEEEEE
Confidence 4678888888 7889999999999999999999993 22345566552 2 3477788898887777776666666
Q ss_pred cCCC
Q 017906 76 KSKV 79 (364)
Q Consensus 76 k~k~ 79 (364)
++--
T Consensus 82 vkfy 85 (575)
T 2i1j_A 82 AKFY 85 (575)
T ss_dssp ESSC
T ss_pred EEEc
Confidence 6543
No 199
>3hm6_X Plexin-B1; structural genomics consortium, SGC, membrane, transmembrane receptor, cell membrane, glycoprotein, phosphoprotein; 2.40A {Homo sapiens} PDB: 3sua_D* 3su8_X*
Probab=81.54 E-value=4.3 Score=42.28 Aligned_cols=64 Identities=20% Similarity=0.229 Sum_probs=44.9
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHhCCCCCCC------CCeEEEe----CCe-ecCCC-------------CChhhhccCCC
Q 017906 12 HFEIEVKPEDKVSDVKKNIETVQGSDVYPA------SQQMLIH----QGK-VLKDV-------------TTLEENKVAEN 67 (364)
Q Consensus 12 ~~~ieV~~s~TV~dLK~kI~~~~g~~~ip~------~~qkLif----~Gk-iL~D~-------------~tL~d~gIk~~ 67 (364)
.+.+.|-..|||.++|+||-+..-++ +|. +.+.|-| .|+ +|.|. .||..|+|.+|
T Consensus 275 ~i~VkVLdCDTItQVKeKiLDavYk~-~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~~wkrLNTL~HY~V~dg 353 (644)
T 3hm6_X 275 GVPVKVLDCDTISQAKEKMLDQLYKG-VPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVPDG 353 (644)
T ss_dssp CEEEEEETTSBHHHHHHHHHHHHTTT-SCGGGSCCGGGEEEEEECSSSCEEEECSSSTTCCEETTEEECCBTTTTTCCTT
T ss_pred ceeeEeeccCcHHHHHHHHHHHHHcC-CCcccCCCCCCcceEEeeCCCCceeecccCccceecCcceeecchhhcCCCCC
Confidence 47788889999999999999764322 333 4455554 233 46552 38999999999
Q ss_pred CEEEEEEec
Q 017906 68 SFVVVMLTK 76 (364)
Q Consensus 68 s~I~v~v~k 76 (364)
++|.++-+.
T Consensus 354 a~v~L~p~~ 362 (644)
T 3hm6_X 354 ATVALVPCL 362 (644)
T ss_dssp CEEEEEEC-
T ss_pred cEEEEEecc
Confidence 999876443
No 200
>1ixs_A Holliday junction DNA helicase RUVA; heterodimeric protein complex, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.20A {Thermus thermophilus} SCOP: a.5.1.1
Probab=80.93 E-value=1.1 Score=32.75 Aligned_cols=28 Identities=11% Similarity=0.192 Sum_probs=24.9
Q ss_pred CcchHHHHHHHHHcCCCCCCHHHHHHHHHHH
Q 017906 169 GSNLEATVQQILDMGGGSWDRETVIRALRAA 199 (364)
Q Consensus 169 g~~~e~~V~~i~~MG~~~f~r~qv~~ALrAa 199 (364)
+...++.|.-|+.+| |.+.++.+|++..
T Consensus 14 ~~~~~ea~~AL~aLG---Y~~~ea~kav~~v 41 (62)
T 1ixs_A 14 SEAAEEAVMALAALG---FKEAQARAVVLDL 41 (62)
T ss_dssp CHHHHHHHHHHHHTT---CCHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHcC---CCHHHHHHHHHHH
Confidence 445688999999999 9999999999886
No 201
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=80.67 E-value=4.6 Score=31.54 Aligned_cols=46 Identities=7% Similarity=0.111 Sum_probs=35.8
Q ss_pred EEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCC-CCeEEEeCCe
Q 017906 2 KVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPA-SQQMLIHQGK 51 (364)
Q Consensus 2 kI~VKtl~gk~~~ieV~~s~TV~dLK~kI~~~~g~~~ip~-~~qkLif~Gk 51 (364)
+|++. .+|..+.+.|+++.+..+|.++|.+.++ +.. +.+.|.|...
T Consensus 8 kvK~~-~~gdi~~~~v~~~i~~~~L~~kv~~~~~---~~~~~~f~lky~DE 54 (89)
T 1vd2_A 8 RVKAY-YRGDIMITHFEPSISFEGLCNEVRDMCS---FDNEQLFTMKWIDE 54 (89)
T ss_dssp EEEEE-SSSCEEEEEECTTCCHHHHHHHHHHHTT---CCSSCCEEEEECCS
T ss_pred EEEEE-eCCeEEEEECCCCCCHHHHHHHHHHHhC---CCCCCeEEEEEECC
Confidence 34444 4678899999999999999999999988 654 4477778653
No 202
>3onh_A Ubiquitin-activating enzyme E1-like; ligase, SUMO conjugation, UBC9; 1.60A {Saccharomyces cerevisiae} PDB: 3ong_A
Probab=80.40 E-value=4.8 Score=33.55 Aligned_cols=51 Identities=25% Similarity=0.336 Sum_probs=37.9
Q ss_pred CCcHHHHHHHHHHHhCCCCCCCCCeEEEe--CCeec-----CC--CCChhhhccCCCCEEEEEE
Q 017906 20 EDKVSDVKKNIETVQGSDVYPASQQMLIH--QGKVL-----KD--VTTLEENKVAENSFVVVML 74 (364)
Q Consensus 20 s~TV~dLK~kI~~~~g~~~ip~~~qkLif--~GkiL-----~D--~~tL~d~gIk~~s~I~v~v 74 (364)
..|+.+|-+.|..+.| +. +.+.++- ..+.| +| +++|+++||+.|++|.++-
T Consensus 19 ~~TL~dLV~~l~~~~g---y~-~eiSV~~~~~~rLLyD~DfDDnl~k~L~dLgv~~gsfLtv~D 78 (127)
T 3onh_A 19 KMKLSDFVVLIREKYS---YP-QDISLLDASNQRLLFDYDFEDLNDRTLSEINLGNGSIILFSD 78 (127)
T ss_dssp HCBHHHHHHHHHHHHT---CC-SSEEEEETTTTEEEEETTBCTTTTSBTTTTTCCTTCEEEEEE
T ss_pred ccCHHHHHHHHHHhcC---CC-CcEEEEecCCCCeEeCCCccccccCcHHHcCcCCCcEEEEEc
Confidence 4799999888988888 54 3555542 34454 23 5899999999999998875
No 203
>3ig3_A Plxna3 protein; plexin intracellular GAP RBD inactive, membrane, transmembra membrane protein, signaling protein; 1.99A {Mus musculus} PDB: 3ryt_A*
Probab=80.16 E-value=6.3 Score=40.92 Aligned_cols=65 Identities=18% Similarity=0.295 Sum_probs=45.8
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHhCCCCCC------CCCeEEEe----CCe-ecCCC-------------CChhhhccCC
Q 017906 11 THFEIEVKPEDKVSDVKKNIETVQGSDVYP------ASQQMLIH----QGK-VLKDV-------------TTLEENKVAE 66 (364)
Q Consensus 11 k~~~ieV~~s~TV~dLK~kI~~~~g~~~ip------~~~qkLif----~Gk-iL~D~-------------~tL~d~gIk~ 66 (364)
..+.+.|-..|||.++|+||-+..-++ .| ++++-|-| .|+ +|.|. .||..|+|.+
T Consensus 247 ~~i~vkVLdCDTItQVKeKiLdavYk~-~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~~wkrLNTL~HY~V~D 325 (627)
T 3ig3_A 247 AQVPVKVLNCDSITQAKDKLLDTVYKG-IPYSQRPKAEDMDLEWRQGRMARIILQDEDITTKIECDWKRVNSLAHYQVTD 325 (627)
T ss_dssp CEEEEEEETTCBHHHHHHHHHHHHTTT-SCGGGSCCGGGEEEEEESCSSCEEEECSSSTTCCEETTEEECCBTTTTTCCT
T ss_pred CceeeEeeccCcHHHHHHHHHHHHHcC-CCcccCCCCCccceeEeeCCCCceeeccCCccccccCceeEecchhhcCCCC
Confidence 467788889999999999999875322 33 34556654 233 35441 3789999999
Q ss_pred CCEEEEEEec
Q 017906 67 NSFVVVMLTK 76 (364)
Q Consensus 67 ~s~I~v~v~k 76 (364)
|.+|.++-+.
T Consensus 326 ga~v~L~p~~ 335 (627)
T 3ig3_A 326 GSLVALVPKQ 335 (627)
T ss_dssp TCEEEEEEC-
T ss_pred CceEEEEecc
Confidence 9999886543
No 204
>1ufz_A Hypothetical protein BAB28515; HBS1-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, translatio; NMR {Mus musculus} SCOP: a.5.9.1
Probab=79.89 E-value=3.8 Score=31.66 Aligned_cols=42 Identities=10% Similarity=0.158 Sum_probs=35.2
Q ss_pred hHHHHHHHHHcCCCCCCHHHHHHHHHHHcCChHHHHHHHHhC
Q 017906 172 LEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 213 (364)
Q Consensus 172 ~e~~V~~i~~MG~~~f~r~qv~~ALrAafnNpdRAvEyL~~G 213 (364)
+..-+.+|-+.=|.++++.+.+.|.-..-+|++||++|+++.
T Consensus 34 L~SCLd~iR~VlGdsV~e~~Lv~ailk~dfD~ekALd~vL~~ 75 (83)
T 1ufz_A 34 LYSCLDHMREVLGDAVPDDILTEAILKHKFDVQKALSVVLEQ 75 (83)
T ss_dssp HHHHHHHHHHHTTTTSCHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccCCHHHHHHHHHHhcCCHHHHHHHHHhc
Confidence 455677777766678999999998888999999999999964
No 205
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=79.78 E-value=6.4 Score=37.83 Aligned_cols=70 Identities=23% Similarity=0.231 Sum_probs=51.5
Q ss_pred EEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCC---------eecCCCCChhhhccCCCCEEEE
Q 017906 2 KVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQG---------KVLKDVTTLEENKVAENSFVVV 72 (364)
Q Consensus 2 kI~VKtl~gk~~~ieV~~s~TV~dLK~kI~~~~g~~~ip~~~qkLif~G---------kiL~D~~tL~d~gIk~~s~I~v 72 (364)
.+.|..++|....+.|+.+.|+.+|-..|+...|. ...+..-|.+.. +-|+.++.|.+.++.....+++
T Consensus 87 ~~~V~l~dg~~~~~~vd~~tt~~el~~~v~~~l~L--~e~~~FgL~~~~~~~~~~~~~~wL~~~k~l~~q~~~~~~~l~f 164 (371)
T 3ivf_A 87 PLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGI--TNHDEYSLVRELMEEKKDDELNWLDHGRTLREQGVEEHETLLL 164 (371)
T ss_dssp EEEEECTTSCEEEEEEETTSBHHHHHHHHHHHTTC--SCGGGEEEECCC----------CCCTTSBTGGGTCCTTCEEEE
T ss_pred EEEEECcCCCEEEEEECCCCCHHHHHHHHHHHcCC--CCccccEEEEEecccccchHHHHHhcCchhHhhCCCCCceEEE
Confidence 57888999999999999999999999999999993 234556676532 2355667777766655555544
Q ss_pred E
Q 017906 73 M 73 (364)
Q Consensus 73 ~ 73 (364)
.
T Consensus 165 r 165 (371)
T 3ivf_A 165 R 165 (371)
T ss_dssp E
T ss_pred E
Confidence 3
No 206
>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1
Probab=79.77 E-value=1.2 Score=40.48 Aligned_cols=23 Identities=13% Similarity=0.514 Sum_probs=21.4
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHH
Q 017906 173 EATVQQILDMGGGSWDRETVIRALRA 198 (364)
Q Consensus 173 e~~V~~i~~MG~~~f~r~qv~~ALrA 198 (364)
+..|+++++|| |+++.|+.||+-
T Consensus 170 ~~~v~~~~~mg---~~~~~~~~al~~ 192 (215)
T 1tte_A 170 HDLIDEFESQG---FEKDKIVEVLRR 192 (215)
T ss_dssp HHHHHHHHHHT---CCHHHHHHHHHH
T ss_pred HHHHHHHHHcC---CCHHHHHHHHHH
Confidence 67999999999 999999999964
No 207
>2k9x_A Tburm1, uncharacterized protein; unknown function; NMR {Trypanosoma brucei}
Probab=79.75 E-value=0.52 Score=38.34 Aligned_cols=68 Identities=10% Similarity=0.099 Sum_probs=41.0
Q ss_pred CEEEEEeCC------CcEEEEEeCC----CCcHHHHHHHHHHHhCCCCCCCCCeEEEe-CC--e------ecCCCCCh--
Q 017906 1 MKVFVKTLK------GTHFEIEVKP----EDKVSDVKKNIETVQGSDVYPASQQMLIH-QG--K------VLKDVTTL-- 59 (364)
Q Consensus 1 MkI~VKtl~------gk~~~ieV~~----s~TV~dLK~kI~~~~g~~~ip~~~qkLif-~G--k------iL~D~~tL-- 59 (364)
|+|+||... |+...+++.. ..||.+|-..|.+... ..+-+|+. +| + +|-|+..+
T Consensus 5 m~v~V~f~g~l~~l~g~~~~v~l~~~~g~~~TV~dLl~~L~~~~~-----~~r~~lf~~~g~~~lrpgIlVLVNg~d~e~ 79 (110)
T 2k9x_A 5 NHITVQFAGGCELLFAKQTSLQLDGVVPTGTNLNGLVQLLKTNYV-----KERPDLLVDQTGQTLRPGILVLVNSCDAEV 79 (110)
T ss_dssp SCCEEEEESSCGGGTTSCSEECCCCSCGGGCCHHHHHHHHTTTTC-----CSCHHHHBCSSSSSBCTTEEEEESSSBHHH
T ss_pred cEEEEEEEecHHHHhCCeEEEEeCCcCCCCccHHHHHHHHHHHcc-----ccchhhEecCCCcccCCCeEEEECCeeeec
Confidence 677787553 4555677763 2499999888887743 22333331 23 1 34344443
Q ss_pred ---hhhccCCCCEEEEE
Q 017906 60 ---EENKVAENSFVVVM 73 (364)
Q Consensus 60 ---~d~gIk~~s~I~v~ 73 (364)
.+|-+++||.|.++
T Consensus 80 l~gldt~L~dgD~V~fi 96 (110)
T 2k9x_A 80 VGGMDYVLNDGDTVEFI 96 (110)
T ss_dssp HTSSCCCCCSSCEEEEE
T ss_pred cCCcccCCCCcCEEEEe
Confidence 34679999997775
No 208
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A
Probab=79.51 E-value=6.9 Score=36.57 Aligned_cols=62 Identities=16% Similarity=0.044 Sum_probs=47.9
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeC---C--eecCCCCChhhhcc
Q 017906 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQ---G--KVLKDVTTLEENKV 64 (364)
Q Consensus 1 MkI~VKtl~gk~~~ieV~~s~TV~dLK~kI~~~~g~~~ip~~~qkLif~---G--kiL~D~~tL~d~gI 64 (364)
|.+.|..++|....+.|+...|+.+|-..|+...|. ...+-.-|.|. | .-|+.++.|.+...
T Consensus 18 ~~~~V~lldgt~~~~~vd~~tt~~el~~~v~~~l~L--~e~~~FgL~~~~~~~~~~wLd~~k~i~~q~~ 84 (296)
T 3qij_A 18 GHCKVSLLDDTVYECVVEKHAKGQDLLKRVCEHLNL--LEEDYFGLAIWDNATSKTWLDSAKEIKKQVR 84 (296)
T ss_dssp CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHTC--SSGGGEEEEEEEETTEEEECCTTSBHHHHC-
T ss_pred EEEEEEccCCCEEEEEECCCCCHHHHHHHHHHHcCC--CCcceeEEEEEcCCCccchhccchhHHHhcC
Confidence 568899999999999999999999999999999993 23344566543 3 24777888887643
No 209
>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A
Probab=79.07 E-value=2.8 Score=32.85 Aligned_cols=35 Identities=20% Similarity=0.142 Sum_probs=26.0
Q ss_pred CEEEEEeC------C-C-cEEEEEeC--CCCcHHHHHHHHHHHhC
Q 017906 1 MKVFVKTL------K-G-THFEIEVK--PEDKVSDVKKNIETVQG 35 (364)
Q Consensus 1 MkI~VKtl------~-g-k~~~ieV~--~s~TV~dLK~kI~~~~g 35 (364)
|+|+||.+ . | +...+++. ...||.+|...+.++..
T Consensus 2 M~i~V~~fa~lre~~~g~~~~~~~l~~~~~~Tv~~L~~~L~~~~~ 46 (99)
T 2qjl_A 2 VNVKVEFLGGLDAIFGKQRVHKIKMDKEDPVTVGDLIDHIVSTMI 46 (99)
T ss_dssp EEEEEEEETTGGGGTTTCCEEEEEECSCSCCBHHHHHHHHHHHTC
T ss_pred cEEEEEEchHHHHHhCCCcEEEEecCCCCCCcHHHHHHHHHHHCc
Confidence 57888744 2 2 45667776 67899999999998863
No 210
>3kuz_A Plexin-C1; structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=78.70 E-value=8 Score=32.12 Aligned_cols=60 Identities=22% Similarity=0.237 Sum_probs=40.9
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHh----CCCCCCC----CCeEEEe-C---CeecCC----------C----CChhhhcc
Q 017906 11 THFEIEVKPEDKVSDVKKNIETVQ----GSDVYPA----SQQMLIH-Q---GKVLKD----------V----TTLEENKV 64 (364)
Q Consensus 11 k~~~ieV~~s~TV~dLK~kI~~~~----g~~~ip~----~~qkLif-~---GkiL~D----------~----~tL~d~gI 64 (364)
..+.+.|-..|||.++|+||-+.. | +|. +.+.|-| . |++|.| . .||..|+|
T Consensus 39 ~~v~VkVLdCDTItQVKEKILdavYk~k~---~pys~r~~d~dLEwr~g~~~~~L~D~D~tS~~~e~~wkrLNTL~HY~V 115 (126)
T 3kuz_A 39 RNISVNVLDCDTIGQAKEKIFQAFLSKNG---SPYGLQLNEIGLELQMGTRQKELLDIDSSSVILEDGITKLNTIGHYEI 115 (126)
T ss_dssp CEEEEEEETTCBHHHHHHHHHHHHHHHHS---SCCSSCGGGEEEEEEETTEEEEECSSCTTCCBCTTSCBCCCBTGGGTC
T ss_pred CceEeeeecCCcHHHHHHHHHHHHhccCC---CcCCCCccccceEEecCCCcceeeccCCcceEecCCeeEeccccccCC
Confidence 467888889999999999997653 4 433 3444544 1 233322 1 36778999
Q ss_pred CCCCEEEEE
Q 017906 65 AENSFVVVM 73 (364)
Q Consensus 65 k~~s~I~v~ 73 (364)
.+|.+|-++
T Consensus 116 ~Dgatlal~ 124 (126)
T 3kuz_A 116 SNGSTIKVF 124 (126)
T ss_dssp CTTCEEEEE
T ss_pred CCCCEEEEe
Confidence 999999765
No 211
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=77.43 E-value=8.4 Score=30.69 Aligned_cols=71 Identities=20% Similarity=0.112 Sum_probs=49.0
Q ss_pred EEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEE--e----CCeecCCCCChhhh----ccCCCCEEEE
Q 017906 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLI--H----QGKVLKDVTTLEEN----KVAENSFVVV 72 (364)
Q Consensus 3 I~VKtl~gk~~~ieV~~s~TV~dLK~kI~~~~g~~~ip~~~qkLi--f----~GkiL~D~~tL~d~----gIk~~s~I~v 72 (364)
|+|-..+|....|.|+.++|+.++-+++..+.++. . ....-|+ + --+.|+|...|-+. .+..+..+++
T Consensus 12 vkvf~~Dgssksi~V~~~~Ta~dv~~~L~~K~~~~-~-~~~WaLvE~~P~L~~ER~~EDHE~vvevl~~W~~~s~nr~~F 89 (100)
T 1wgr_A 12 VKVYSEDGACRSVEVAAGATARHVCEMLVQRAHAL-S-DETWGLVECHPHLALERGLEDHESVVEVQAAWPVGGDSRFVF 89 (100)
T ss_dssp EEEEETTSCEEEEEECTTCCHHHHHHHHHCSSSCC-C-CCCCCEEEEETTTTEEEEECSSSCHHHHHTTSCSSSCCEEEE
T ss_pred EEEEecCCCEEEEEECCCCcHHHHHHHHHHHcCCC-C-CCCeEEEEecCCCCcEEeccCchhHHHHHhhCccCCCcEEEE
Confidence 55666789999999999999999999999998842 2 2222332 1 23678888776554 4455666655
Q ss_pred EEe
Q 017906 73 MLT 75 (364)
Q Consensus 73 ~v~ 75 (364)
.-+
T Consensus 90 ~kr 92 (100)
T 1wgr_A 90 RKN 92 (100)
T ss_dssp CSC
T ss_pred ecc
Confidence 433
No 212
>2l52_A Methanosarcina acetivorans SAMP1 homolog; beta-grAsp fold, protein binding, E1-like, SAMP activator, ELSA, adenylation, ubiquitin; NMR {Methanosarcina acetivorans}
Probab=77.27 E-value=8.7 Score=29.97 Aligned_cols=69 Identities=16% Similarity=0.221 Sum_probs=41.8
Q ss_pred CEEEEEeCC------C-cEEEEEeCCCCcHHHHHHHHHHHhCC--CCC-CCC----Ce-------EEEeCCeecCCCCCh
Q 017906 1 MKVFVKTLK------G-THFEIEVKPEDKVSDVKKNIETVQGS--DVY-PAS----QQ-------MLIHQGKVLKDVTTL 59 (364)
Q Consensus 1 MkI~VKtl~------g-k~~~ieV~~s~TV~dLK~kI~~~~g~--~~i-p~~----~q-------kLif~GkiL~D~~tL 59 (364)
|+|+|+... | +.+.++ ..||.+|.+.+...... ..+ ... .. .+..||+.+.... -
T Consensus 4 m~v~V~~fa~lr~~~g~~~~~l~---~~tv~~ll~~L~~~~p~l~~~l~~~g~l~~~v~~~~~~~~v~VNg~~v~~~~-~ 79 (99)
T 2l52_A 4 AEVKVKLFANLREAAGTPELPLS---GEKVIDVLLSLTDKYPALKYVIFEKGDEKSEILILCGSINILINGNNIRHLE-G 79 (99)
T ss_dssp CEEEEEECTHHHHHHSSSEEEEE---CSSHHHHHHHHHHHCGGGTTTSBCSCCTTSSCCCBCSSCEEEETTSCGGGTT-S
T ss_pred eEEEEEEeHHHHHHhCCCeEEEe---CCcHHHHHHHHHHHChhHHHHHhcccccccceeccccccEEEECCEEccccC-C
Confidence 788888653 3 244444 68999999999887420 001 001 23 5677887663221 1
Q ss_pred hhhccCCCCEEEEE
Q 017906 60 EENKVAENSFVVVM 73 (364)
Q Consensus 60 ~d~gIk~~s~I~v~ 73 (364)
.++-+++|+.|.++
T Consensus 80 ~~~~L~~gD~V~i~ 93 (99)
T 2l52_A 80 LETLLKDSDEIGIL 93 (99)
T ss_dssp TTSCCCTTEEEEEE
T ss_pred CCCCCCCCCEEEEE
Confidence 23458899998876
No 213
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=75.77 E-value=15 Score=26.90 Aligned_cols=56 Identities=5% Similarity=0.087 Sum_probs=37.2
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHhCC--CCCCCCCeEEEeCCeecCCCCChhhhccCCCCEEEEE
Q 017906 12 HFEIEVKPEDKVSDVKKNIETVQGS--DVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVM 73 (364)
Q Consensus 12 ~~~ieV~~s~TV~dLK~kI~~~~g~--~~ip~~~qkLif~GkiL~D~~tL~d~gIk~~s~I~v~ 73 (364)
.+.++ ....||.+|++.+...... ..+......+..||+.... +.-+++|+.|.++
T Consensus 18 ~~~~~-~~~~tv~~ll~~L~~~~p~~~~~l~~~~~~v~vN~~~v~~-----~~~l~~gD~V~i~ 75 (81)
T 1fm0_D 18 ATEVA-ADFPTVEALRQHMAAQSDRWALALEDGKLLAAVNQTLVSF-----DHPLTDGDEVAFF 75 (81)
T ss_dssp EEEEC-SCCSBHHHHHHHHHTTCHHHHHHHCCTTCEEEETTEECCT-----TCBCCTTCEEEEE
T ss_pred eEEEc-CCCCCHHHHHHHHHHHChhHHHHhcCCCEEEEECCEECCC-----CCCCCCCCEEEEe
Confidence 55565 5678999999998754210 0011234567889998853 4468899998886
No 214
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=74.72 E-value=6.1 Score=28.92 Aligned_cols=54 Identities=7% Similarity=0.089 Sum_probs=39.6
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCe--EEEeCCeecCCCCChhhhccCCCCEEEEE
Q 017906 11 THFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQ--MLIHQGKVLKDVTTLEENKVAENSFVVVM 73 (364)
Q Consensus 11 k~~~ieV~~s~TV~dLK~kI~~~~g~~~ip~~~q--kLif~GkiL~D~~tL~d~gIk~~s~I~v~ 73 (364)
+...+++....||.+|.+.+...... .... .+..+|+.+..+ .-+++|+.|.++
T Consensus 16 ~~~~~~~~~~~tv~~ll~~l~~~~p~----~~~v~~~v~vNg~~v~~~-----~~L~~gD~V~i~ 71 (77)
T 2q5w_D 16 AQEDIVLEQALTVQQFEDLLFERYPQ----INNKKFQVAVNEEFVQKS-----DFIQPNDTVALI 71 (77)
T ss_dssp SEEECCCSSCEEHHHHHHHHHHHCGG----GTTCCCEEEETTEEECTT-----SEECTTCEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCcc----hhcceEEEEECCEECCCC-----CCcCCCCEEEEE
Confidence 35667777788999999998877420 1233 678899988653 468899998876
No 215
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=72.98 E-value=4.3 Score=29.11 Aligned_cols=56 Identities=11% Similarity=0.230 Sum_probs=39.8
Q ss_pred CCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCChhhhccCCCCEEEEEE
Q 017906 8 LKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVML 74 (364)
Q Consensus 8 l~gk~~~ieV~~s~TV~dLK~kI~~~~g~~~ip~~~qkLif~GkiL~D~~tL~d~gIk~~s~I~v~v 74 (364)
++|+.+. + ...||.+|.+.+ + ++.....+..+|+++..+ ...+.-+++|+.|.++-
T Consensus 4 vNg~~~~--~-~~~tv~~ll~~l----~---~~~~~v~vavN~~~v~~~-~~~~~~L~dgD~v~i~~ 59 (64)
T 2cu3_A 4 LNGEPRP--L-EGKTLKEVLEEM----G---VELKGVAVLLNEEAFLGL-EVPDRPLRDGDVVEVVA 59 (64)
T ss_dssp ETTEEEC--C-TTCCHHHHHHHH----T---BCGGGEEEEETTEEEEGG-GCCCCCCCTTCEEEEEE
T ss_pred ECCEEEE--c-CCCcHHHHHHHc----C---CCCCcEEEEECCEECCcc-ccCCcCCCCCCEEEEEe
Confidence 4677654 4 568999999876 4 556677788999988532 22334588999998873
No 216
>2ns5_A Partitioning-defective 3 homolog; cell polarity, N-terminal domain, PB1 domain, asymmetric membrane localization, signaling protein; NMR {Rattus norvegicus}
Probab=71.87 E-value=30 Score=26.68 Aligned_cols=72 Identities=18% Similarity=0.127 Sum_probs=45.8
Q ss_pred CEEEEEeCCCcEEEEEeC-CCCcHHHHHHHHHHHhCCC-CC-CCCCeEE---Ee-CCeecCCCCChhhhccCCCCEEEEE
Q 017906 1 MKVFVKTLKGTHFEIEVK-PEDKVSDVKKNIETVQGSD-VY-PASQQML---IH-QGKVLKDVTTLEENKVAENSFVVVM 73 (364)
Q Consensus 1 MkI~VKtl~gk~~~ieV~-~s~TV~dLK~kI~~~~g~~-~i-p~~~qkL---if-~GkiL~D~~tL~d~gIk~~s~I~v~ 73 (364)
|||+|+. .+..+.|-+. ...||..|-++--.++-+. .. +.....+ -+ .|-+|+.+..|.+. +.++++|+-+
T Consensus 3 MKvtV~f-g~~~vvVPC~dg~~tV~~L~~~A~~RY~K~~~k~~~~~v~V~~l~~~~ggiLD~DD~l~dV-ldD~e~i~A~ 80 (85)
T 2ns5_A 3 FKVTVCF-GRTRVDVPCGDGRMKVFSLIQQAVTRYRKAVAKDPNYWIQVHRLEHGDGGILDLDDILCDV-ADDKDRLVAV 80 (85)
T ss_dssp EEEEEEE-TTEEEEEEESSSCCCHHHHHHHHHHHHHHHTTCCTTSCEEEEEEECSSSCEECTTSCHHHH-SCTTEEEEEE
T ss_pred cEEEEEE-CCEEEEEECCCCcccHHHHHHHHHHHHHHhcCCCCCcEEEEEEEEeCCCcEeCcccchhhh-ccCcceEEEE
Confidence 8999994 4666777664 4569998876555443210 01 1222222 23 78899989999987 6777887665
Q ss_pred E
Q 017906 74 L 74 (364)
Q Consensus 74 v 74 (364)
.
T Consensus 81 ~ 81 (85)
T 2ns5_A 81 F 81 (85)
T ss_dssp E
T ss_pred e
Confidence 4
No 217
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=70.89 E-value=1.8 Score=30.77 Aligned_cols=42 Identities=19% Similarity=0.121 Sum_probs=31.2
Q ss_pred cchHHHHHHHHHcCCCCCCHHHHHHHHHHHcCChHHHHHHHHh
Q 017906 170 SNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYS 212 (364)
Q Consensus 170 ~~~e~~V~~i~~MG~~~f~r~qv~~ALrAafnNpdRAvEyL~~ 212 (364)
.+.++.|+.|.+|=- .+|++-++..|++--+|.|-||+.||.
T Consensus 10 ~e~~~~~~~L~~MFP-~lD~evI~~Vl~a~~G~~~~~IdaLLq 51 (54)
T 1p3q_Q 10 NERKDTLNTLQNMFP-DMDPSLIEDVCIAAASRIGPCVDALLS 51 (54)
T ss_dssp HHHHHHHHHHHHHST-TSCHHHHHHHHHHSCC--CGGGC----
T ss_pred HHHHHHHHHHHHHcc-cCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 357889999999931 189999999999999999999999973
No 218
>1aip_C EF-TS, elongation factor TS; nucleotide exchange, GTP-binding, complex of two elongation factors; 3.00A {Thermus thermophilus} SCOP: a.5.2.2 d.43.1.1
Probab=70.84 E-value=4.8 Score=35.97 Aligned_cols=37 Identities=27% Similarity=0.272 Sum_probs=32.9
Q ss_pred HHHHHHHHHc-CCCCCCHHHHHHHHHHHcCChHHHHHHHHh
Q 017906 173 EATVQQILDM-GGGSWDRETVIRALRAAYNNPERAVEYLYS 212 (364)
Q Consensus 173 e~~V~~i~~M-G~~~f~r~qv~~ALrAafnNpdRAvEyL~~ 212 (364)
-.+|.+|-++ | +.=-+|..||..+.+|-|.|+|||--
T Consensus 4 a~~VKeLRe~TG---agmmdCKkAL~e~~GD~ekAie~LR~ 41 (196)
T 1aip_C 4 MELIKKLREATG---AGMMDVKRALEDAGWDEEKAVQLLRE 41 (196)
T ss_dssp HHHHHHHHHHHC---CCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhC---CCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 3578999987 7 78889999999999999999999963
No 219
>1xb2_B EF-TS, elongation factor TS, mitochondrial, EF-TSMT; protein-protein complex, translation; HET: MSE; 2.20A {Bos taurus} SCOP: a.5.2.2 d.43.1.1 d.43.1.1
Probab=69.15 E-value=5 Score=38.00 Aligned_cols=36 Identities=14% Similarity=0.186 Sum_probs=32.8
Q ss_pred HHHHHHHHc-CCCCCCHHHHHHHHHHHcCChHHHHHHHHh
Q 017906 174 ATVQQILDM-GGGSWDRETVIRALRAAYNNPERAVEYLYS 212 (364)
Q Consensus 174 ~~V~~i~~M-G~~~f~r~qv~~ALrAafnNpdRAvEyL~~ 212 (364)
.+|.+|-++ | +.=-+|..||..+.+|-|.|+|||--
T Consensus 6 ~~VKeLRe~TG---agmmdCKKAL~e~~GD~ekAie~LR~ 42 (291)
T 1xb2_B 6 ELLMKLRRKTG---YSFINCKKALETCGGDLKQAESWLHK 42 (291)
T ss_dssp HHHHHHHHHHC---CCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhC---CCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 578899888 7 88899999999999999999999983
No 220
>2c7h_A RBBP6, retinoblastoma-binding protein 6, isoform 3; P53-associated, mRNA processing, splicing-associated, oesophageal cancer; NMR {Homo sapiens}
Probab=67.72 E-value=17 Score=28.22 Aligned_cols=45 Identities=20% Similarity=0.094 Sum_probs=30.2
Q ss_pred EEEEEeCCCcE-EEEEeC-CCCcHHHHHHHHHHHhCCCCCCCCCeEE-EeC
Q 017906 2 KVFVKTLKGTH-FEIEVK-PEDKVSDVKKNIETVQGSDVYPASQQML-IHQ 49 (364)
Q Consensus 2 kI~VKtl~gk~-~~ieV~-~s~TV~dLK~kI~~~~g~~~ip~~~qkL-if~ 49 (364)
.|+.|....+. ..|.++ ...+|.+||+.|..+.+ +-..+.-| ||+
T Consensus 8 ~V~YKFkS~k~~~~v~fdG~~Isv~dLKr~I~~~~k---l~~~dfDL~i~n 55 (86)
T 2c7h_A 8 CVHYKFSSKLNYDTVTFDGLHISLCDLKKQIMGREK---LKAADCDLQITN 55 (86)
T ss_dssp EEEEEETTCSSEEEEEESSSEEEHHHHHHHHHHHHT---CCTTTEEEEEEE
T ss_pred EEEEEEeecCCcceEEEcCCEEEHHHHHHHHHHHhC---CCCCcccEEEeC
Confidence 35666666553 456776 56899999999999988 43344544 343
No 221
>1y8x_B Ubiquitin-activating enzyme E1C; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: c.111.1.2 PDB: 3fn1_A
Probab=66.12 E-value=4.7 Score=32.01 Aligned_cols=59 Identities=17% Similarity=0.257 Sum_probs=40.1
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHhCCCCCCCC-----------CeEEEeCC-eecCC------CCChhhhccCCCCEEEEE
Q 017906 12 HFEIEVKPEDKVSDVKKNIETVQGSDVYPAS-----------QQMLIHQG-KVLKD------VTTLEENKVAENSFVVVM 73 (364)
Q Consensus 12 ~~~ieV~~s~TV~dLK~kI~~~~g~~~ip~~-----------~qkLif~G-kiL~D------~~tL~d~gIk~~s~I~v~ 73 (364)
...|+|++++|+.+|-+.|.+.-. +... ...|++.+ ..|+. +++|.++|+.+|+.|+|.
T Consensus 6 ~~~l~v~~~~TL~~lid~L~~~p~---~qlk~PSltt~~~~~~k~LYmq~pp~Lee~Tr~NL~k~l~eLgl~~g~ei~Vt 82 (98)
T 1y8x_B 6 PQNIQFSPSAKLQEVLDYLTNSAS---LQMKSPAITATLEGKNRTLYMQSVTSIEERTRPNLSKTLKELGLVDGQELAVA 82 (98)
T ss_dssp CCCEECCTTCBHHHHHHHHHHCTT---CCCSSCEEEEEETTEEEEEECSSCHHHHHHHHHHHHSBSGGGTCCTTCEEEEE
T ss_pred cEEEEECCchhHHHHHHHHHhChH---hhccCCeeeeecCCCCCeEEEeCcHHHHHHhHhhhhCCHHHhCCCCCCEEEEE
Confidence 456899999999999999998533 2122 22333333 12321 577999999999998884
No 222
>1tr8_A Conserved protein (MTH177); chaperones, nascent polypeptide-associated complex, ribosome domain, ubiquitin, chaperone; 2.27A {Methanothermobacter marburgensis}
Probab=65.70 E-value=6.7 Score=31.37 Aligned_cols=36 Identities=25% Similarity=0.362 Sum_probs=31.8
Q ss_pred HHHHHHHHH-cCCCCCCHHHHHHHHHHHcCChHHHHHHHH
Q 017906 173 EATVQQILD-MGGGSWDRETVIRALRAAYNNPERAVEYLY 211 (364)
Q Consensus 173 e~~V~~i~~-MG~~~f~r~qv~~ALrAafnNpdRAvEyL~ 211 (364)
++.|.-+|+ +| -+|+.+++||+.+.||.=.|+-||.
T Consensus 66 ~edi~lv~~q~~---vs~~~A~~aL~~~~gDiv~Ai~~Lt 102 (102)
T 1tr8_A 66 EDDIELVMNQTG---ASREDATRALQETGGDLAEAIMRLS 102 (102)
T ss_dssp HHHHHHHHHHHC---CCHHHHHHHHHHTTTCHHHHHHHC-
T ss_pred HHHHHHHHHHhC---CCHHHHHHHHHHcCCCHHHHHHHhC
Confidence 567888887 68 9999999999999999999999883
No 223
>2llv_A Heat shock protein STI1; DP domain, alpha helix, chaperone; NMR {Saccharomyces cerevisiae}
Probab=65.59 E-value=2.7 Score=31.25 Aligned_cols=36 Identities=22% Similarity=0.397 Sum_probs=27.6
Q ss_pred hhCcHHHHHHHHHHHhCccchHH-HHHHHhhhCHHHHHHHHH
Q 017906 280 LRNSQQFQALRTMVQANPQILQP-MLQELGKQNPHLMRLIQE 320 (364)
Q Consensus 280 Lr~~pqf~~lR~~vq~nP~~L~~-~Lqql~~~nP~L~~~I~~ 320 (364)
+...|+|.++=+-|++||+.+.. .+ +||.+.+.|.-
T Consensus 28 ~~~DP~~~~~lq~i~~NP~~i~~~~~-----~dPrv~~~l~~ 64 (71)
T 2llv_A 28 MMKDPQLVAKLIGYKQNPQAIGQDLF-----TDPRLMTIMAT 64 (71)
T ss_dssp HHHSCTHHHHHHHHHHSCTTHHHHTT-----TCHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHCHHHHHHHHh-----hCcHHHHHHHH
Confidence 44677888888888899998876 54 48888887753
No 224
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}
Probab=63.89 E-value=24 Score=33.50 Aligned_cols=51 Identities=14% Similarity=0.104 Sum_probs=40.6
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCC-eecCC-CCChhhhcc
Q 017906 11 THFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQG-KVLKD-VTTLEENKV 64 (364)
Q Consensus 11 k~~~ieV~~s~TV~dLK~kI~~~~g~~~ip~~~qkLif~G-kiL~D-~~tL~d~gI 64 (364)
....+.+.+..|+.+||++|+..++ ++++.|.|+|.+ +..-+ ......|.-
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~t~---i~~~~q~~l~~~~~~~~~~~~~~~~~~~ 374 (396)
T 4eut_A 322 TAHKIYIHSYNTATIFHELVYKQTK---IISSNQELIYEGRRLVLEPGRLAQHFPK 374 (396)
T ss_dssp EEEEEEECTTCBHHHHHHHHHHHHC---CCSTTEEEESSSSEECCCSSCBTTSSCC
T ss_pred eEEEEEcCchhHHHHHHHHHHHhcC---CChhhhHHHhcCCCCCCCCCCccccCCC
Confidence 4567888999999999999999999 999999999998 44433 445555543
No 225
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=61.79 E-value=6.5 Score=32.65 Aligned_cols=33 Identities=15% Similarity=0.289 Sum_probs=29.4
Q ss_pred EEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEe
Q 017906 13 FEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIH 48 (364)
Q Consensus 13 ~~ieV~~s~TV~dLK~kI~~~~g~~~ip~~~qkLif 48 (364)
..+.|-.+.|+.+||..|++..| ++++.|||-+
T Consensus 58 ~~~rv~k~~~~~~~~~~va~~lg---~~~~~~RlW~ 90 (130)
T 2kvr_A 58 TVFKVLKNSSLAEFVQSLSQTMG---FPQDQIRLWP 90 (130)
T ss_dssp EEEECCTTSBHHHHHHHHHHHHC---CCGGGCEEEE
T ss_pred ceEEEeccCcHHHHHHHHHHHhC---CCcccEEEEE
Confidence 35788889999999999999999 9999999853
No 226
>1wgy_A RAP guanine nucleotide exchange factor 5; ubiquitin fold, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=60.78 E-value=33 Score=27.44 Aligned_cols=69 Identities=12% Similarity=0.153 Sum_probs=46.1
Q ss_pred EEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEE---eCCee--cCCCCChhhhccCCCCEEEEEEe
Q 017906 4 FVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLI---HQGKV--LKDVTTLEENKVAENSFVVVMLT 75 (364)
Q Consensus 4 ~VKtl~gk~~~ieV~~s~TV~dLK~kI~~~~g~~~ip~~~qkLi---f~Gki--L~D~~tL~d~gIk~~s~I~v~v~ 75 (364)
.|...+..-+++.+..+.|+.+|+..+.++.+ +..+.++|+ ++|.. |+++...-.-.+.-+..|++..+
T Consensus 13 ~Vy~~Dhsy~tvr~~v~~sa~eIl~~va~kl~---~~~e~l~Lv~v~ssGEk~~lqp~d~si~tsL~~NgRLfvc~k 86 (104)
T 1wgy_A 13 HVYITEHSYVSVKAKVSSIAQEILKVVAEKIQ---YAEEDLALVAITFSGEKHELQPNDLVISKSLEASGRIYVYRK 86 (104)
T ss_dssp EEECSSSCEEEECCCTTCBSHHHHHHHHHHHT---SCGGGEEEEEECSSCCCCBCCTTSBSSCCSSCSSCEEEEEEC
T ss_pred EEEeccCceEEEEEeccchHHHHHHHHHHHhc---CCccceEEEEEccCCcEeecCCcceEEEeeccccceEEEeeh
Confidence 34444566778888899999999999999998 655678775 67754 45433222223444567776543
No 227
>1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} SCOP: a.5.2.3
Probab=60.43 E-value=19 Score=23.74 Aligned_cols=38 Identities=13% Similarity=0.179 Sum_probs=32.2
Q ss_pred hHHHHHHHHHcCCCCCCHHHHHHHHHHHcCChHHHHHHHH
Q 017906 172 LEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLY 211 (364)
Q Consensus 172 ~e~~V~~i~~MG~~~f~r~qv~~ALrAafnNpdRAvEyL~ 211 (364)
.++.|.+.++.-| -+++.++.-|.++-.|.++||....
T Consensus 5 ~~~~i~~F~~iTg--~~~~~A~~~L~~~~wdle~Ai~~ff 42 (46)
T 1v92_A 5 RQDALREFVAVTG--AEEDRARFFLESAGWDLQIALASFY 42 (46)
T ss_dssp HHHHHHHHHHHTC--CCHHHHHHHHHHTTSCSHHHHHHHH
T ss_pred HHHHHHHHHHHhC--cCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 5678999999742 6899999999999999999997544
No 228
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A
Probab=59.43 E-value=26 Score=26.12 Aligned_cols=59 Identities=12% Similarity=0.272 Sum_probs=37.1
Q ss_pred EEEeCCCCcHHHHHHHHHHHhCC--C--CCC----CCCeEEEeCCeecCCCCChhhhccCCCCEEEEE
Q 017906 14 EIEVKPEDKVSDVKKNIETVQGS--D--VYP----ASQQMLIHQGKVLKDVTTLEENKVAENSFVVVM 73 (364)
Q Consensus 14 ~ieV~~s~TV~dLK~kI~~~~g~--~--~ip----~~~qkLif~GkiL~D~~tL~d~gIk~~s~I~v~ 73 (364)
.++++...||.+|.+.+...... . .+. .....+..||+.+.... -.+.-+++|+.|.++
T Consensus 18 ~~~~~~~~tv~~ll~~l~~~~p~~~~~~l~~~~g~~~~v~v~vN~~~v~~~~-~~~~~l~~gD~V~i~ 84 (90)
T 2g1e_A 18 EETFNGISKISELLERLKVEYGSEFTKQMYDGNNLFKNVIILVNGNNITSMK-GLDTEIKDDDKIDLF 84 (90)
T ss_dssp EEEESSCCBHHHHHHHHHHHSCHHHHHHHCCSSCSTTTCEEEESSSBGGGTC-SSSCBCCTTCEEEEE
T ss_pred EEEcCCCCcHHHHHHHHHHHCcchhhhccccccCcCcceEEEECCEEccccC-CCCcCCCCCCEEEEe
Confidence 34566668999999999877310 0 000 13456778888775221 124458999998876
No 229
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Probab=58.50 E-value=10 Score=39.92 Aligned_cols=51 Identities=18% Similarity=0.333 Sum_probs=41.5
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCe-ecCCCCChhhh
Q 017906 9 KGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGK-VLKDVTTLEEN 62 (364)
Q Consensus 9 ~gk~~~ieV~~s~TV~dLK~kI~~~~g~~~ip~~~qkLif~Gk-iL~D~~tL~d~ 62 (364)
..+...+.+.++.|+.+||..|...+| ++.+.|.|++.+. .|+.......|
T Consensus 320 ~~~~~~~~i~~~~tl~~l~~~i~~~T~---i~~~~q~~~~~~~~~~~p~~~~~~~ 371 (676)
T 3qa8_A 320 SGRVHTYPVTENENLQNLKSWLQQDTG---IPEEEQELLQASGLALNSAQPLTQY 371 (676)
T ss_dssp SSCCCEEECCTTCCHHHHHHHHHTTSC---CCSTTCEEESSSSCCCCTTSCGGGS
T ss_pred ccccceeecCCCccHHHHHHHHHHHhC---CCHHHHHHHhccCCCCCCCcchhhh
Confidence 345567889999999999999999999 9999999998654 45556666665
No 230
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=57.97 E-value=26 Score=26.32 Aligned_cols=63 Identities=25% Similarity=0.255 Sum_probs=44.0
Q ss_pred EEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCChhhhccCCCCEEEEEEec
Q 017906 2 KVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTK 76 (364)
Q Consensus 2 kI~VKtl~gk~~~ieV~~s~TV~dLK~kI~~~~g~~~ip~~~qkLif~GkiL~D~~tL~d~gIk~~s~I~v~v~k 76 (364)
.|+|.+.+|+.+ ++....|+.|+=..|....+. .-.--..+|+...-+ +-+++|+.|.++..+
T Consensus 7 ~i~v~tP~G~~~--~lp~GaT~~D~A~~Ih~~lg~-----~~v~AkVNG~~v~L~-----~~L~~gd~VeIit~~ 69 (78)
T 3hvz_A 7 EVFVFTPKGDVI--SLPIGSTVIDFAYAIHSAVGN-----RMIGAKVDGRIVPID-----YKVKTGEIIDVLTTK 69 (78)
T ss_dssp EEEEECTTSCEE--EEETTCBHHHHHHHHCHHHHH-----TEEEEEETTEEECTT-----CBCCTTCBEEEEECC
T ss_pred eEEEECCCCCEE--EecCCCCHHHHHHHhhhhhhc-----ceEEEEECCEEcCCC-----cccCCCCEEEEEccC
Confidence 478888899775 456778999998888877662 122334588876543 456788888877543
No 231
>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A {Methanothermobacterthermautotrophicus} SCOP: b.40.4.11
Probab=57.29 E-value=6.1 Score=36.77 Aligned_cols=56 Identities=16% Similarity=0.271 Sum_probs=42.4
Q ss_pred hHhhhCcHHHHHHHHHHHhCc--cchHHHHHHHhhhCHHHHHHHHHCHHHHHHHhcCC
Q 017906 277 LDFLRNSQQFQALRTMVQANP--QILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP 332 (364)
Q Consensus 277 l~~Lr~~pqf~~lR~~vq~nP--~~L~~~Lqql~~~nP~L~~~I~~n~e~Fl~~l~e~ 332 (364)
.+||++.-...+||++++.++ .-|.-=+..|..-||+|+..|..||.++|.+|.+.
T Consensus 19 ~~Fl~~~~Y~~~i~~~~~~~~~~~~l~Vd~~dL~~~~~~La~~l~~~P~~~l~~~~~a 76 (279)
T 1ltl_A 19 EEFFSLQDYKDRVFEAIEKYPNVRSIEVDYLDLEMFDPDLADLLIEKPDDVIRAAQQA 76 (279)
T ss_dssp HHHTTSHHHHHHHHHHHHHTTSCCEEEEEHHHHHHHCTTHHHHHHHSHHHHHHHHHHH
T ss_pred HHHhccchHHHHHHHHHhhCCCCeEEEEEhHHHhhhCHHHHHHHHHCHHHHHHHHHHH
Confidence 478887545688888884433 33444456788889999999999999999998653
No 232
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A
Probab=56.49 E-value=3.9 Score=30.48 Aligned_cols=48 Identities=29% Similarity=0.495 Sum_probs=35.1
Q ss_pred EEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCChhhhccCCCCEEEEE
Q 017906 14 EIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVM 73 (364)
Q Consensus 14 ~ieV~~s~TV~dLK~kI~~~~g~~~ip~~~qkLif~GkiL~D~~tL~d~gIk~~s~I~v~ 73 (364)
.+++....||.+|.+.+ + ++.....+..+|+++..+ .-|++||.|.++
T Consensus 24 ~~~~~~~~Tv~dLl~~L----~---~~~~~v~VavNg~~v~~~-----~~L~dGD~V~i~ 71 (77)
T 1rws_A 24 EIEWREGMKVRDILRAV----G---FNTESAIAKVNGKVVLED-----DEVKDGDFVEVI 71 (77)
T ss_dssp CCCCCSSCCHHHHHHTT----T---CSSCSSCEEETTEEECSS-----SCCCSSCCCBCS
T ss_pred EEECCCCCcHHHHHHHh----C---CCCcCEEEEECCEECCCC-----CCcCCCCEEEEE
Confidence 35666778999998764 4 556677788999998765 457788877654
No 233
>2inc_C TOUB protein; DIIRON, 4-helix bundle, carboxylate bridge, metalloenzyme, oxidoreductase; HET: P6G; 1.85A {Pseudomonas stutzeri} SCOP: d.15.12.1 PDB: 2ind_C* 3n20_C* 1t0r_C 1t0s_C 1t0q_C* 3n1x_C 3n1y_C* 3n1z_C* 2rdb_C* 3rn9_C* 3rna_C 3rnb_C 3rnc_C 3rne_C 3rnf_C* 3rng_C
Probab=53.32 E-value=66 Score=24.67 Aligned_cols=62 Identities=8% Similarity=0.106 Sum_probs=48.5
Q ss_pred EEEEeCCCCcHHHHHHHHHHH-hCCCCC---CCCCeEEEeCC--eecCCCCChhhhccCCCCEEEEEEe
Q 017906 13 FEIEVKPEDKVSDVKKNIETV-QGSDVY---PASQQMLIHQG--KVLKDVTTLEENKVAENSFVVVMLT 75 (364)
Q Consensus 13 ~~ieV~~s~TV~dLK~kI~~~-~g~~~i---p~~~qkLif~G--kiL~D~~tL~d~gIk~~s~I~v~v~ 75 (364)
.-+.|+..+|+.++-++++-- .|.. + |-.-.+..++| +.|..+.++.+-||+.-+.|.+...
T Consensus 15 ~LV~VDt~dTmdqVA~kvA~HsVGrR-V~p~p~~~~rVr~~G~~~~~pr~~tvae~gl~P~e~vev~~~ 82 (83)
T 2inc_C 15 QLVPVDTEDTMDQVAEKCAYHSINRR-VHPQPEKILRVRRHEDGTLFPRGMIVSDAGLRPTETLDIIFM 82 (83)
T ss_dssp EEEEECTTCBHHHHHHHHHTTTBTTT-BCCCTTSEEEEEETTTCCEECTTCBGGGSCCCTTCEEEEEEE
T ss_pred EEEEecCCCcHHHHHHHHhhhhccee-cCCCCCCeEEEEecCCccCCCCCCEeeccCCCCceEEEEEEc
Confidence 457899999999999999854 2433 2 22245677899 8999999999999999999888753
No 234
>3ge3_C Toluene-4-monooxygenase system protein B; DIIRON hydroxylase, effector protein, T201A, aromatic hydrocarbons catabolism, FAD, flavoprotein; 1.52A {Pseudomonas mendocina} SCOP: d.15.12.0 PDB: 3dhh_C* 3dhg_C* 3dhi_C 3ge8_C 3i5j_C 3i63_C 3q14_C 3q2a_C* 3q3m_C* 3q3n_C* 3q3o_C* 3rmk_C* 3ri7_C*
Probab=52.69 E-value=43 Score=25.74 Aligned_cols=61 Identities=10% Similarity=0.098 Sum_probs=48.9
Q ss_pred EEEEeCCCCcHHHHHHHHHHHh-CCCCC--CCCCeEEEeCCee--cCCCCChhhhccCCCCEEEEEE
Q 017906 13 FEIEVKPEDKVSDVKKNIETVQ-GSDVY--PASQQMLIHQGKV--LKDVTTLEENKVAENSFVVVML 74 (364)
Q Consensus 13 ~~ieV~~s~TV~dLK~kI~~~~-g~~~i--p~~~qkLif~Gki--L~D~~tL~d~gIk~~s~I~v~v 74 (364)
.-+.|+..+|+.++-++++.-. |.. + .+.-.++.++|.. |.++.++.+-||+.-+.|.++.
T Consensus 17 ~Lv~VDt~dtmdqVA~k~A~h~VGrr-v~p~pg~lrVr~~G~~~~~Pr~mtVaeaGl~Pme~vev~~ 82 (84)
T 3ge3_C 17 QLVVVDLNDSMDQVAEKVAYHCVNRR-VAPREGVMRVRKHRSTELFPRDMTIAESGLNPTEVIDVVF 82 (84)
T ss_dssp EEEEEETTCBHHHHHHHHHHTTBTTT-BCCCSSCEEEEETTCSCBCCTTCBHHHHCCCTTCEEEEEE
T ss_pred EEEEecCCCcHHHHHHHHhhhhccee-eCCCCCcEEEEECCCcccCCCCCEeeccCCCcceEEEEEE
Confidence 4578999999999999988653 432 2 1236788899988 9999999999999999988765
No 235
>2eel_A Cell death activator CIDE-A; CIDE-N domain, cell death- inducing DFFA-like effector A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=50.76 E-value=86 Score=24.39 Aligned_cols=50 Identities=10% Similarity=0.128 Sum_probs=34.4
Q ss_pred CcHHHHHHHHHHHhCCCCCCCCCeEEEe--CCeecCCCCChhhhccCCCCEEEEEEec
Q 017906 21 DKVSDVKKNIETVQGSDVYPASQQMLIH--QGKVLKDVTTLEENKVAENSFVVVMLTK 76 (364)
Q Consensus 21 ~TV~dLK~kI~~~~g~~~ip~~~qkLif--~GkiL~D~~tL~d~gIk~~s~I~v~v~k 76 (364)
.+..+|+.|....++ ++....+|+. .|.+++|+.-+..+ ++.++.|++.+
T Consensus 28 ~sL~EL~~K~~~~l~---l~~~~~~lvLeeDGT~VddEeyF~tL---p~nT~lmvL~~ 79 (91)
T 2eel_A 28 SSLQELISKTLDALV---IATGLVTLVLEEDGTVVDTEEFFQTL---GDNTHFMILEK 79 (91)
T ss_dssp SSHHHHHHHHHHHTT---CSSSCEEEEETTTCCBCCCHHHHTTS---CSSEEEEEEET
T ss_pred CCHHHHHHHHHHHhc---CCCCCcEEEEeeCCcEEechhhhhhC---CCCCEEEEEcC
Confidence 379999999999998 7655666654 68888776544443 24555555554
No 236
>2kmc_A Fermitin family homolog 1; kindlin, cytoskeleton, integrin, N-terminal, talin, cell adhesion, cell junction, cell membrane, cell projection; NMR {Mus musculus}
Probab=50.67 E-value=92 Score=24.70 Aligned_cols=73 Identities=18% Similarity=0.120 Sum_probs=54.2
Q ss_pred EEEEEeCCC---cEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCC---eecCCCCChhhhccCCCCEEEEEEe
Q 017906 2 KVFVKTLKG---THFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQG---KVLKDVTTLEENKVAENSFVVVMLT 75 (364)
Q Consensus 2 kI~VKtl~g---k~~~ieV~~s~TV~dLK~kI~~~~g~~~ip~~~qkLif~G---kiL~D~~tL~d~gIk~~s~I~v~v~ 75 (364)
+|+|..++. ..+++.|..+.-|+-|-.+|-++.... -.-+.--|-+.- -.|+-..+|..|||..+..+++.-.
T Consensus 21 ~V~V~d~~~~~~~~~~lrV~GdlHIGGvmlklVEki~i~-~dWSDhaLWW~~k~~WLlkt~~tLDkygiqADa~L~ftp~ 99 (102)
T 2kmc_A 21 VVRVDHANGEQQTEITLRVSGDLHIGGVMLKLVEQMNIA-QDWSDYALWWEQKRCWLLKTHWTLDKCGVQADANLLFTPQ 99 (102)
T ss_dssp EEEEECTTSSCEEEEEEEECSCCBHHHHHHHHHHHHCCS-SCCSSEEEEETTTTEEECCTTSBHHHHTCCTTSCEEEEEC
T ss_pred EEEEecCCcccCccEEEEEeeccccchhhhhhhhhcccc-cchHHhhhhhhhhchhhhhhhhhhhhhceeeeeeeeccCC
Confidence 688887654 568899999999999999999887611 223344554433 3567889999999999999988743
No 237
>2dal_A Protein KIAA0794; FAS associted factor 1, UBA-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=50.46 E-value=23 Score=25.38 Aligned_cols=40 Identities=28% Similarity=0.280 Sum_probs=33.1
Q ss_pred chHHHHHHHHHcCCCCCCHHHHHHHHHHHcCChHHHHHHHHh
Q 017906 171 NLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYS 212 (364)
Q Consensus 171 ~~e~~V~~i~~MG~~~f~r~qv~~ALrAafnNpdRAvEyL~~ 212 (364)
..++.|.+.|++-| =+++.++.-|.++-+|.++||...+.
T Consensus 14 ~~~e~i~qF~~iTg--~~~~~A~~~Le~~~WnLe~Av~~ff~ 53 (62)
T 2dal_A 14 ALKGLIQQFTTITG--ASESVGKHMLEACNNNLEMAVTMFLD 53 (62)
T ss_dssp HHHHHHHHHHHHTC--CCHHHHHHHHHTTTSCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhC--CCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 35778999999732 67999999999999999999985553
No 238
>3au4_A Myosin-X; protein-protein complex, motor protein cargo transportation, protein-apoptosis complex; 1.90A {Homo sapiens} PDB: 3au5_A 3pzd_A
Probab=49.67 E-value=29 Score=35.08 Aligned_cols=58 Identities=14% Similarity=0.153 Sum_probs=43.7
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCC--CCCeEEEeC--C--eecCCCCChhh
Q 017906 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYP--ASQQMLIHQ--G--KVLKDVTTLEE 61 (364)
Q Consensus 1 MkI~VKtl~gk~~~ieV~~s~TV~dLK~kI~~~~g~~~ip--~~~qkLif~--G--kiL~D~~tL~d 61 (364)
|.+.|..++|....+.|+...|+.+|-..|+...| +. .+..-|.+. + +.|+++..+.|
T Consensus 217 ~~~~V~l~dg~~~~~~v~~~tt~~el~~~v~~~lg---L~e~~~~FgL~~~~~~~~~~L~~~~~i~D 280 (555)
T 3au4_A 217 MTSTVYCHGGGSCKITINSHTTAGEVVEKLIRGLA---MEDSRNMFALFEYNGHVDKAIESRTVVAD 280 (555)
T ss_dssp EEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTT---CTTCCSEEEEEEESSSCEEECCTTSBHHH
T ss_pred cceEEEecCCCeEEEEeCCCCcHHHHHHHHHHHcC---CCCCCCceEEEEEeCCeeEecCCCCchhH
Confidence 35788899999999999999999999999999999 54 345556542 2 23566655544
No 239
>4g3o_A E3 ubiquitin-protein ligase AMFR; all-helical structure, BAG6; 1.60A {Homo sapiens}
Probab=49.59 E-value=36 Score=24.42 Aligned_cols=43 Identities=21% Similarity=0.267 Sum_probs=37.9
Q ss_pred cCCcchHHHHHHHHHc--CCCCCCHHHHHHHHHHHcCChHHHHHHHHhC
Q 017906 167 VAGSNLEATVQQILDM--GGGSWDRETVIRALRAAYNNPERAVEYLYSG 213 (364)
Q Consensus 167 ~~g~~~e~~V~~i~~M--G~~~f~r~qv~~ALrAafnNpdRAvEyL~~G 213 (364)
-.-+.++.+|+.+.+| - ++++++..-|+-. +|.+.-+|=++.|
T Consensus 12 ~~~sql~~Mve~V~~mFPq---v~~~~I~~DL~rT-gSVe~TienILeG 56 (58)
T 4g3o_A 12 YFQGQLNAMAHQIQEMFPQ---VPYHLVLQDLQLT-RSVEITTDNILEG 56 (58)
T ss_dssp HHHHHHHHHHHHHHHHCTT---SCHHHHHHHHHHH-CCHHHHHHHHHTT
T ss_pred hhhHHHHHHHHHHHHHcCC---CCHHHHHHHHHHh-CCHHHHHHHHHcc
Confidence 3445788999999999 4 6999999999998 9999999999988
No 240
>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A*
Probab=49.40 E-value=12 Score=35.65 Aligned_cols=37 Identities=19% Similarity=0.260 Sum_probs=27.9
Q ss_pred hHHHHHHHHHcCCCCCCHHHHHHHH----HHHcCChHHHHHHHH
Q 017906 172 LEATVQQILDMGGGSWDRETVIRAL----RAAYNNPERAVEYLY 211 (364)
Q Consensus 172 ~e~~V~~i~~MG~~~f~r~qv~~AL----rAafnNpdRAvEyL~ 211 (364)
.+.+|..|.++| +++++++++- ..+-.|||.-++||.
T Consensus 19 ~~~~v~~L~s~G---l~~~~~~~~~p~l~~~s~~~~~~vl~fL~ 59 (343)
T 3mva_O 19 NEDLLKNLLTMG---VDIDMARKRQPGVFHRMITNEQDLKMFLL 59 (343)
T ss_dssp -CCHHHHHHHHT---CCHHHHHHHCGGGGGCSCCCHHHHHHHHH
T ss_pred cHHHHHHHHHcC---CCHHHHHHhCchhhccCcccHHHHHHHHH
Confidence 456899999999 9999876652 123458888888886
No 241
>4dbg_B Ring finger protein 31; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens}
Probab=48.84 E-value=14 Score=31.80 Aligned_cols=28 Identities=25% Similarity=0.177 Sum_probs=26.0
Q ss_pred CCCCCHHHHHHHHHHHcCChHHHHHHHH
Q 017906 184 GGSWDRETVIRALRAAYNNPERAVEYLY 211 (364)
Q Consensus 184 ~~~f~r~qv~~ALrAafnNpdRAvEyL~ 211 (364)
+|.+.+.++.+||+.+-.|-++||.+++
T Consensus 72 ~g~~s~~EAr~Aw~~~~Gd~~~Av~~ci 99 (162)
T 4dbg_B 72 LGAFSCQEARRAWLDRHGNLDEAVEECV 99 (162)
T ss_dssp GCCCCHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred CCcccHHHHHHHHHHccCChHHHHHHHH
Confidence 6789999999999999999999998875
No 242
>3w1s_C Ubiquitin-like protein ATG12; ubiquitin fold, E3-like, ATG3 binding, isopeptide bond betwe Gly186 and ATG5 Lys149, ligase; 2.60A {Saccharomyces cerevisiae S288C}
Probab=48.80 E-value=87 Score=24.22 Aligned_cols=59 Identities=7% Similarity=-0.027 Sum_probs=43.1
Q ss_pred EEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeec-CCCCChhhh--ccCCCCEEEEEEec
Q 017906 13 FEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVL-KDVTTLEEN--KVAENSFVVVMLTK 76 (364)
Q Consensus 13 ~~ieV~~s~TV~dLK~kI~~~~g~~~ip~~~qkLif~GkiL-~D~~tL~d~--gIk~~s~I~v~v~k 76 (364)
-.+-|..+.||..|...|.++.+ + +.+-|+.+...+ ..+.++.++ ..+++.+++|..+.
T Consensus 25 ~KflV~~~~t~~~~v~~lRkrL~---l--~alFlyVNn~f~Ps~d~~~~~Ly~~fk~dg~Lyv~Ys~ 86 (91)
T 3w1s_C 25 SVCKISMSQSFAMVILFLKRRLK---M--DHVYCYINNSFAPSPQQNIGELWMQFKTNDELIVSYCA 86 (91)
T ss_dssp -EEEEETTSBHHHHHHHHHHHHT---C--SCCEEEETTTBCCCTTSBHHHHHHHHCBTTEEEEEEEC
T ss_pred cEEEcCCCCCHHHHHHHHHHhhC---C--ceEEEEECCccCCCcccHHHHHHHHhCCCCEEEEEEeC
Confidence 34668889999999999999988 5 566666677654 446777665 23467888887654
No 243
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=48.70 E-value=49 Score=33.56 Aligned_cols=58 Identities=14% Similarity=0.068 Sum_probs=41.7
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHhCCCCCC---CCCeEE--EeCCee---cCCCCChhhhccCCCCEEEE
Q 017906 12 HFEIEVKPEDKVSDVKKNIETVQGSDVYP---ASQQML--IHQGKV---LKDVTTLEENKVAENSFVVV 72 (364)
Q Consensus 12 ~~~ieV~~s~TV~dLK~kI~~~~g~~~ip---~~~qkL--if~Gki---L~D~~tL~d~gIk~~s~I~v 72 (364)
.+.|-|..+.||.||-..+..+.+ ++ ...+|| +|++|+ ++++.+|..++=....+|.+
T Consensus 353 ~~~l~vpK~gtV~Dll~~l~k~~~---~~~~~~~~lRl~ev~~~ki~ki~~~~~~i~~i~d~~~~~~ri 418 (530)
T 2ylm_A 353 EITLYPDKHGCVRDLLEECKKAVE---LGEKASGKLRLLEIVSYKIIGVHQEDELLECLSPATSRTFRI 418 (530)
T ss_dssp EEEECCBTTCBHHHHHHHHHTTCC---CCTTCCCCEEEEEEETTEEEEEECTTSBGGGSCCCTTCEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcC---CCcCCcccEEEEEEECCEEEEecCCCcccccccccccceEEE
Confidence 566778889999999999999887 54 467777 588875 57788888653211444444
No 244
>1eo6_A GATE-16, golgi-associated ATPase enhancer of 16 KD; ubiquitin fold, protein binding; 1.80A {Bos taurus} SCOP: d.15.1.3
Probab=48.06 E-value=87 Score=25.22 Aligned_cols=59 Identities=19% Similarity=0.178 Sum_probs=41.6
Q ss_pred EEeCCCCcHHHHHHHHHHHhCCCCCCCCC-eEEEeCCeecCCCCChhhh--cc-CCCCEEEEEEec
Q 017906 15 IEVKPEDKVSDVKKNIETVQGSDVYPASQ-QMLIHQGKVLKDVTTLEEN--KV-AENSFVVVMLTK 76 (364)
Q Consensus 15 ieV~~s~TV~dLK~kI~~~~g~~~ip~~~-qkLif~GkiL~D~~tL~d~--gI-k~~s~I~v~v~k 76 (364)
+-|..+.||.+|...|....+ +.+++ +-|+.++....-+.+|.++ .. .++.+++|....
T Consensus 49 flVp~~~tv~~f~~~iRk~l~---l~~~~alfl~vn~~~p~~~~~m~~LY~~~kd~DGfLyi~Ys~ 111 (117)
T 1eo6_A 49 YLVPSDITVAQFMWIIRKRIQ---LPSEKAIFLFVDKTVPQSSLTMGQLYEKEKDEDGFLYVAYSG 111 (117)
T ss_dssp EEEETTSBHHHHHHHHHHHHT---CCTTSCCEEEBTTBCCCTTSBHHHHHHHHCCTTSCEEEEEEC
T ss_pred EEcCCCCCHHHHHHhhHHhhc---CCCCCcEEEEECCEecCccchHHHHHHHhCCCCCEEEEEEeC
Confidence 346678899999999999988 55554 4555566555567777776 22 347799988764
No 245
>2l9b_A MRNA 3'-END-processing protein RNA15; 3' END mRNA maturation, transcription; NMR {Saccharomyces cerevisiae}
Probab=47.05 E-value=18 Score=29.21 Aligned_cols=31 Identities=23% Similarity=0.369 Sum_probs=24.2
Q ss_pred HHHHHHHHHhCccchHHHHHHHhhhCHHHHHHHHH
Q 017906 286 FQALRTMVQANPQILQPMLQELGKQNPHLMRLIQE 320 (364)
Q Consensus 286 f~~lR~~vq~nP~~L~~~Lqql~~~nP~L~~~I~~ 320 (364)
+.+|++++..||+..-.||. +||||.-.|-|
T Consensus 58 L~qmK~~~~~nP~~a~~LL~----q~PQLAyAl~Q 88 (109)
T 2l9b_A 58 LQKFQEWTRAHPEDAASLLE----LCPQLSFVTAE 88 (109)
T ss_dssp HHHHHHHHHHCHHHHHHHHH----HCHHHHHHHHH
T ss_pred HHHHHHHHHhCHHHHHHHHH----HCchHHHHHHH
Confidence 57888999999988877765 58888876644
No 246
>2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; 2.10A {Haemophilus influenzae} SCOP: d.15.3.4
Probab=46.91 E-value=23 Score=27.84 Aligned_cols=59 Identities=8% Similarity=-0.053 Sum_probs=41.5
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCChhhhccCCCCEEEEEE
Q 017906 11 THFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVML 74 (364)
Q Consensus 11 k~~~ieV~~s~TV~dLK~kI~~~~g~~~ip~~~qkLif~GkiL~D~~tL~d~gIk~~s~I~v~v 74 (364)
+.+.+++....||.++-+...-......+.....++-.+|++... +.-+++||.|-++-
T Consensus 26 ~~~~~~v~~g~TV~daI~~~gi~~~~peIdl~~~~V~Vng~~v~~-----d~~L~dGDRVEIyr 84 (97)
T 2hj1_A 26 YLKSFQVDEGITVQTAITQSGILSQFPEIDLSTNKIGIFSRPIKL-----TDVLKEGDRIEIYR 84 (97)
T ss_dssp EEEEEEEETTCBHHHHHHHHTHHHHCTTCCTTTSEEEEEECSCCT-----TCBCCTTCEEEECC
T ss_pred EEEEEEcCCCCcHHHHHHHcCCCccCCcccccccEEEEcCEECCC-----CccCCCCCEEEEEe
Confidence 456778889999999988876432210144556788888988873 44578899998863
No 247
>3h9d_A ATG8, microtubule-associated protein 1A/1B, light chain putative; autophagy, lipidation, ubiquitin-like, S protein; 2.30A {Trypanosoma brucei} SCOP: d.15.1.0
Probab=46.82 E-value=86 Score=25.45 Aligned_cols=59 Identities=14% Similarity=0.171 Sum_probs=43.5
Q ss_pred EEeCCCCcHHHHHHHHHHHhCCCCCCCCC-eEEEeCCeecCCCCChhhh--cc-CCCCEEEEEEec
Q 017906 15 IEVKPEDKVSDVKKNIETVQGSDVYPASQ-QMLIHQGKVLKDVTTLEEN--KV-AENSFVVVMLTK 76 (364)
Q Consensus 15 ieV~~s~TV~dLK~kI~~~~g~~~ip~~~-qkLif~GkiL~D~~tL~d~--gI-k~~s~I~v~v~k 76 (364)
+-|..+.||.+|...|....+ +.+++ +-|+.++....-+.+++++ .- .++.+|+|....
T Consensus 52 flVp~~~tv~qf~~~iRkrl~---l~~~~alFl~Vn~~~p~~~~~m~~lY~~~kd~DGfLyv~Ys~ 114 (119)
T 3h9d_A 52 FLVPSDLTVGQFVSVLRKRVQ---LEAESALFVYTNDTVLPSSAQMADIYSKYKDEDGFLYMKYSG 114 (119)
T ss_dssp EEEETTCBHHHHHHHHHHHHT---CCTTSCCEEEETTEECCTTSBHHHHHHHHCCTTSCEEEEEEC
T ss_pred EEcCCCCCHHHHHHHHHHHhC---CCccceEEEEECCcCCCccchHHHHHHHcCCCCCeEEEEEec
Confidence 457889999999999999988 65555 5566688766677787765 22 356788887654
No 248
>3m95_A Autophagy related protein ATG8; alpha slash beta, receptor, transport protein; 2.40A {Bombyx mori} SCOP: d.15.1.3
Probab=46.41 E-value=63 Score=26.56 Aligned_cols=59 Identities=10% Similarity=0.070 Sum_probs=42.3
Q ss_pred EEeCCCCcHHHHHHHHHHHhCCCCCCCCC-eEEEeCCeecCCCCChhhh--ccC-CCCEEEEEEec
Q 017906 15 IEVKPEDKVSDVKKNIETVQGSDVYPASQ-QMLIHQGKVLKDVTTLEEN--KVA-ENSFVVVMLTK 76 (364)
Q Consensus 15 ieV~~s~TV~dLK~kI~~~~g~~~ip~~~-qkLif~GkiL~D~~tL~d~--gIk-~~s~I~v~v~k 76 (364)
+-|..+.||.+|...|..... +.+++ +-|+.++....-+.+++++ .-+ ++.+|+|....
T Consensus 57 flVp~~~tv~qf~~~IRkrl~---L~~~~alFl~Vnn~lPs~s~~m~~lY~~~kdeDGfLY~~Ys~ 119 (125)
T 3m95_A 57 YLVPSDLTVGQFYFLIRKRIH---LRPEDALFFFVNNVIPPTSATMGSLYQEHHDEDFFLYIAFSD 119 (125)
T ss_dssp EEEETTSBHHHHHHHHHHHTT---CCTTSCCEEEBTTBCCCTTSBHHHHHHHHCCTTSCEEEEEES
T ss_pred EEcCCCCEeeeehhhhHhhcC---CCccccEEEEECCccCCccchHHHHHHHcCCCCCeEEEEecC
Confidence 457889999999999999988 65655 4555566555667777766 223 57788887754
No 249
>1b4u_A LIGA, LIGB, protocatechuate 4,5-dioxygenase; extradiol type dioxygenase, non-heme iron protein; HET: DHB; 2.20A {Sphingomonas paucimobilis} SCOP: a.88.1.1 PDB: 1bou_A
Probab=45.50 E-value=19 Score=30.35 Aligned_cols=26 Identities=12% Similarity=0.184 Sum_probs=22.8
Q ss_pred hHHHHHHHhhhCHHHHHHHHHCHHHHHH
Q 017906 300 LQPMLQELGKQNPHLMRLIQEHQTDFLR 327 (364)
Q Consensus 300 L~~~Lqql~~~nP~L~~~I~~n~e~Fl~ 327 (364)
|..++++|. .|++++...++|++++.
T Consensus 37 LNkf~~sL~--~~~~RerF~aDpeA~l~ 62 (139)
T 1b4u_A 37 LNQFAMSLM--KAENRERFKADESAYLD 62 (139)
T ss_dssp HHHHHHHTT--SHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHC--CHHHHHHHHhCHHHHHH
Confidence 478889997 49999999999999986
No 250
>3rui_B Autophagy-related protein 8; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} SCOP: d.15.1.3 PDB: 2kq7_A 2zpn_A 3vxw_A 2kwc_A 2li5_A 3vh3_B 3vh4_B*
Probab=44.94 E-value=95 Score=25.14 Aligned_cols=59 Identities=10% Similarity=0.106 Sum_probs=41.5
Q ss_pred EEeCCCCcHHHHHHHHHHHhCCCCCCCCC-eEEEeCCeecCCCCChhhh--cc-CCCCEEEEEEec
Q 017906 15 IEVKPEDKVSDVKKNIETVQGSDVYPASQ-QMLIHQGKVLKDVTTLEEN--KV-AENSFVVVMLTK 76 (364)
Q Consensus 15 ieV~~s~TV~dLK~kI~~~~g~~~ip~~~-qkLif~GkiL~D~~tL~d~--gI-k~~s~I~v~v~k 76 (364)
+-|..+.||.+|...|..... +.+++ +-|+.++....-+.+++++ .- .++.+|+|....
T Consensus 51 flVp~~~tv~qf~~~iRkrl~---l~~~~alFl~Vn~~~p~~~~~m~~lY~~~kdeDGfLyv~Ys~ 113 (118)
T 3rui_B 51 YLVPADLTVGQFVYVIRKRIM---LPPEKAIFIFVNDTLPPTAALMSAIYQEHKDKDGFLYVTYSG 113 (118)
T ss_dssp EEEETTSBHHHHHHHHHHHTT---CCTTCCEEEEBTTBCCCTTSBHHHHHHHHCCTTSCEEEEEEE
T ss_pred EEcCCCCCHHHHHHHHHHHhC---cCCCccEEEEECCccCCccchHHHHHHHcCCCCCeEEEEEec
Confidence 447889999999999999988 65554 4444566545567777765 22 356688887654
No 251
>2r2q_A Gamma-aminobutyric acid receptor-associated protein-like 1; autophagy, ubiquitin homolog, structural genomics consortium, SGC, microtubule; 1.65A {Homo sapiens} PDB: 2l8j_A 1kjt_A 1kot_A 3d32_A 3dow_A 1gnu_A 1klv_A 1km7_A
Probab=43.59 E-value=74 Score=25.29 Aligned_cols=58 Identities=12% Similarity=0.082 Sum_probs=40.2
Q ss_pred EEeCCCCcHHHHHHHHHHHhCCCCCCCCC-eEEEeCCeecCCCCChhhh--cc-CCCCEEEEEEe
Q 017906 15 IEVKPEDKVSDVKKNIETVQGSDVYPASQ-QMLIHQGKVLKDVTTLEEN--KV-AENSFVVVMLT 75 (364)
Q Consensus 15 ieV~~s~TV~dLK~kI~~~~g~~~ip~~~-qkLif~GkiL~D~~tL~d~--gI-k~~s~I~v~v~ 75 (364)
+-|..+.||.+|...|....+ +.+++ +-|+.++....-+.+|.++ .. .++.+++|...
T Consensus 48 flVp~~~tv~~~~~~iRk~l~---l~~~~alfl~vn~~~p~~~~~m~~LY~~~kd~DGfLyi~Ys 109 (110)
T 2r2q_A 48 YLVPSDLTVGQFYFLIRKRIH---LRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFLYVAYS 109 (110)
T ss_dssp EEEETTCBHHHHHHHHHHHTT---CCTTSCCEEEBTTBCCCTTSBHHHHHHHHCCTTSCEEEEEE
T ss_pred EEeCCCCcHHHHHHHHHHHhc---CCCCCcEEEEECCEecCccChHHHHHHHcCCCCCEEEEEEe
Confidence 456668899999999999987 55554 4565566555567777776 22 34778888653
No 252
>2zjd_A Microtubule-associated proteins 1A/1B light chain 3B precursor; autophagy, LC3, microtubule-associated protein 1 light chain 3, cytoplasm, cytoplasmic vesicle, lipoprotein; 1.56A {Homo sapiens} SCOP: d.15.1.3 PDB: 2z0e_B 2zzp_B 2z0d_B 1ugm_A 1v49_A 2k6q_A 3eci_A
Probab=41.94 E-value=65 Score=26.64 Aligned_cols=59 Identities=19% Similarity=0.243 Sum_probs=41.8
Q ss_pred EEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEE-eCCeec-CCCCChhhh--cc-CCCCEEEEEEec
Q 017906 15 IEVKPEDKVSDVKKNIETVQGSDVYPASQQMLI-HQGKVL-KDVTTLEEN--KV-AENSFVVVMLTK 76 (364)
Q Consensus 15 ieV~~s~TV~dLK~kI~~~~g~~~ip~~~qkLi-f~GkiL-~D~~tL~d~--gI-k~~s~I~v~v~k 76 (364)
+-|..+.||.+|...|....+ +.+++--.+ |.++.+ .-+.+++++ .- .++.+++|....
T Consensus 57 flVp~~~tv~qf~~~iRkrL~---l~~~~alFl~~vn~~~p~~~~~m~~lY~~~kdeDGfLyv~Ys~ 120 (130)
T 2zjd_A 57 FLVPDHVNMSELIKIIRRRLQ---LNANQAFFLLVNGHSMVSVSTPISEVYESEKDEDGFLYMVYAS 120 (130)
T ss_dssp EEEETTCBHHHHHHHHHHHHT---CCTTCCEEEEETTTEECCTTSBHHHHHHHHCCTTSCEEEEEEE
T ss_pred EEcCCCCcHHHHHHHHHHHhC---CCCCceEEEEEECCccCCccchHHHHHHHhCCCCCEEEEEEeC
Confidence 457889999999999999998 666655444 655555 557777776 22 357788887653
No 253
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=41.85 E-value=29 Score=24.39 Aligned_cols=42 Identities=21% Similarity=0.294 Sum_probs=32.1
Q ss_pred ccccCCcchHHHHHHHHHcCCCCCCHHHHHHHHHHHcCChHHHHHHHHhCCC
Q 017906 164 SNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 215 (364)
Q Consensus 164 s~l~~g~~~e~~V~~i~~MG~~~f~r~qv~~ALrAafnNpdRAvEyL~~GIP 215 (364)
|.++.+..+.+.+.+ |+|+-+.+||+.+-+|..+|.+.| ||.
T Consensus 4 ~~~~~~~~l~~~l~~--------~E~~~i~~aL~~~~gn~~~aA~~L--Gis 45 (63)
T 3e7l_A 4 SYLLKIKELKEAKKE--------FEKIFIEEKLREYDYDLKRTAEEI--GID 45 (63)
T ss_dssp CTTTTCSCHHHHHHH--------HHHHHHHHHHHHTTTCHHHHHHHH--TCC
T ss_pred HHhccCCCHHHHHHH--------HHHHHHHHHHHHhCCCHHHHHHHH--CcC
Confidence 344555556665553 788889999999999999999988 664
No 254
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=41.46 E-value=31 Score=27.30 Aligned_cols=26 Identities=15% Similarity=0.120 Sum_probs=23.8
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhC
Q 017906 10 GTHFEIEVKPEDKVSDVKKNIETVQG 35 (364)
Q Consensus 10 gk~~~ieV~~s~TV~dLK~kI~~~~g 35 (364)
+..+.|-|.++.+..+|..+|..+.+
T Consensus 22 ~d~~~i~V~~~i~f~~L~~kI~~Kl~ 47 (98)
T 1q1o_A 22 SEIFTLLVEKVWNFDDLIMAINSKIS 47 (98)
T ss_dssp CEEEEEEECTTCCHHHHHHHHHHHHH
T ss_pred CcEEEEEecCCCCHHHHHHHHHHHHc
Confidence 45789999999999999999999987
No 255
>2dhz_A RAP guanine nucleotide exchange factor (GEF)- like 1; LINK guanine nucleotide exchange factor II, LINK-gefii, RA domain, structural genomics; NMR {Homo sapiens}
Probab=41.43 E-value=63 Score=26.45 Aligned_cols=65 Identities=14% Similarity=0.179 Sum_probs=41.7
Q ss_pred EeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCC------CeEEE---eCCee--cCCC-CChhhhccCCCCEEEEE
Q 017906 6 KTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPAS------QQMLI---HQGKV--LKDV-TTLEENKVAENSFVVVM 73 (364)
Q Consensus 6 Ktl~gk~~~ieV~~s~TV~dLK~kI~~~~g~~~ip~~------~qkLi---f~Gki--L~D~-~tL~d~gIk~~s~I~v~ 73 (364)
...+...+++.+..+.|+.+|+..+.++.+ +..+ .++|+ ++|.. |+++ ..+.. .+.-+..|++.
T Consensus 15 Y~~Dhsy~tvr~~v~~sa~eIl~~va~kl~---~~e~~~~~~~~l~Lv~V~ssGEk~vlqp~d~sv~t-sL~~NgRLfvc 90 (120)
T 2dhz_A 15 YMPDHSYVTIRSRLSASVQDILGSVTEKLQ---YSEEPAGREDSLILVAVSSSGEKVLLQPTEDCVFT-ALGINSHLFAC 90 (120)
T ss_dssp ECTTSCCCCEEECTTCCHHHHHHHHHHHST---TCSSTTSCCSCCEEEEEETTCCCEECCTTCSCHHH-HSCSSEEEEEE
T ss_pred EeccCceEEEEEeccccHHHHHHHHHHHhc---cccccccccCceEEEEEccCCcEeecCCcceEEEe-eccccceEEEe
Confidence 334455567888889999999999999988 4333 67764 67743 4543 33322 24445666654
Q ss_pred E
Q 017906 74 L 74 (364)
Q Consensus 74 v 74 (364)
.
T Consensus 91 ~ 91 (120)
T 2dhz_A 91 T 91 (120)
T ss_dssp C
T ss_pred e
Confidence 3
No 256
>2vl6_A SSO MCM N-TER, minichromosome maintenance protein MCM; helicase, hydrolase, zinc-finger, ATP-binding, DNA-BIND ssDNA binding; 2.8A {Sulfolobus solfataricus}
Probab=41.23 E-value=5.5 Score=36.70 Aligned_cols=56 Identities=14% Similarity=0.199 Sum_probs=44.4
Q ss_pred hHhhhCcH-------HHHHHHHHHHhCccchHHHHHHHhhhCHHHHHHHHHCHHHHHHHhcCC
Q 017906 277 LDFLRNSQ-------QFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP 332 (364)
Q Consensus 277 l~~Lr~~p-------qf~~lR~~vq~nP~~L~~~Lqql~~~nP~L~~~I~~n~e~Fl~~l~e~ 332 (364)
.+||++.- ...+||+++..+-.-|.-=+..|..-||+|+..|..||.++|.+|.+.
T Consensus 15 ~~Fl~~f~~~~~~~~Y~~~i~~~~~~~~~~l~Vd~~dL~~~~~~La~~l~~~P~~~l~~~~~a 77 (268)
T 2vl6_A 15 IEFLTTFKGNNNQNKYIERINELVAYRKKSLIIEFSDVLSFNENLAYEIINNTKIILPILEGA 77 (268)
T ss_dssp HHHHHHCCCSSSSCTTHHHHHHHHHTTCCCEEEEHHHHHHHCHHHHHHHHHHTTTTHHHHHHH
T ss_pred HHHHHhhhcccCchHHHHHHHHHHHcCCcEEEEEHHHHHhhhHHHHHHHHHCHHHHHHHHHHH
Confidence 35776532 467888988887777776677888899999999999999999887653
No 257
>2kna_A Baculoviral IAP repeat-containing protein 4; XIAP, UBA, apoptosis, ligase, metal-binding, phosphoprotein, inhibitor, thiol protease inhibitor; NMR {Homo sapiens}
Probab=41.04 E-value=28 Score=27.60 Aligned_cols=36 Identities=22% Similarity=0.373 Sum_probs=26.8
Q ss_pred HHHHHHHcCCCCCCHHHHHHHHHHH-------cCChHHHHHHHHhC
Q 017906 175 TVQQILDMGGGSWDRETVIRALRAA-------YNNPERAVEYLYSG 213 (364)
Q Consensus 175 ~V~~i~~MG~~~f~r~qv~~ALrAa-------fnNpdRAvEyL~~G 213 (364)
.|++.++|| |++..|.+++.-- |...+.-|.=|+.+
T Consensus 30 vV~~alemG---f~~~~V~~~v~~ki~~sG~~y~Tve~Lv~~ll~~ 72 (104)
T 2kna_A 30 MVQEAIRMG---FSFKDIKKIMEEKIQISGSNYKSLEVLVADLVNA 72 (104)
T ss_dssp HHHHHHHTT---CCHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHH
T ss_pred HHHHHHHcC---ccHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHH
Confidence 799999999 9999999999763 44445555555444
No 258
>4a6q_A Histone deacetylase complex subunit SAP18; transcription, splicing, RNA metabolism, ubiquitin-like; HET: MSE; 1.50A {Mus musculus} PDB: 4a90_A* 2hde_A 4a8x_C
Probab=40.50 E-value=1.2e+02 Score=25.50 Aligned_cols=63 Identities=13% Similarity=0.210 Sum_probs=43.8
Q ss_pred EEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCe----EEEe-----------------CCeec-CCCCChhhhccCCCCEE
Q 017906 13 FEIEVKPEDKVSDVKKNIETVQGSDVYPASQQ----MLIH-----------------QGKVL-KDVTTLEENKVAENSFV 70 (364)
Q Consensus 13 ~~ieV~~s~TV~dLK~kI~~~~g~~~ip~~~q----kLif-----------------~GkiL-~D~~tL~d~gIk~~s~I 70 (364)
+.|-.-.+.|+.+|-..|.+.... .+...- ++|| .|+.- +|++||.+++..-|++|
T Consensus 56 lQIYTW~daTLrEL~~Lvk~~~p~--ar~~gtrl~F~~VypD~r~~ry~~kdlGsv~~g~~~~dd~kTL~~~rF~iGDyi 133 (143)
T 4a6q_A 56 LQIYTWMDATLKELTSLVKEVYPE--ARKKGTHFNFAIVFMDLKRPGYRVKEIGSTMSGRKGTDDSMTLQSQKFQIGDYL 133 (143)
T ss_dssp EEEEECTTCBHHHHHHHHHHHCGG--GGSTTCEEEEEEEEECSSSSSEEEEEEEEEETTBCCTTTTCBTGGGTCCTTCEE
T ss_pred eEEeeCCCCCHHHHHHHHHHhCcc--ccCCCCEEEEEEEcccCCCCceeeccCCEEecCCCCCcccccHHHCCCcCCCEE
Confidence 566677899999999999877431 111112 2332 33333 57899999999999999
Q ss_pred EEEEecC
Q 017906 71 VVMLTKS 77 (364)
Q Consensus 71 ~v~v~k~ 77 (364)
.|-+..+
T Consensus 134 dvaI~pP 140 (143)
T 4a6q_A 134 DIAITPP 140 (143)
T ss_dssp EEEEECG
T ss_pred EEEEeCC
Confidence 9987643
No 259
>1zoq_C CREB-binding protein, interferon regulatory factor 3; transcription regulation, transferase, transcription/transferase complex; 2.37A {Homo sapiens} SCOP: a.153.1.1 PDB: 1jjs_A
Probab=40.22 E-value=20 Score=24.41 Aligned_cols=26 Identities=19% Similarity=0.447 Sum_probs=17.9
Q ss_pred HHHHHHHHHHhCccchHHHHHHHhhh
Q 017906 285 QFQALRTMVQANPQILQPMLQELGKQ 310 (364)
Q Consensus 285 qf~~lR~~vq~nP~~L~~~Lqql~~~ 310 (364)
|=+++-.++.+||+++-.+|.|-.+.
T Consensus 18 qqqqvl~ILksnPqLMAAfIkQR~~~ 43 (47)
T 1zoq_C 18 QQQQVLNILKSNPQLMAAFIKQRTAK 43 (47)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence 45666677778888877777765443
No 260
>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein cargo binding, cargo proteins, motor protein-protein transport complex; 2.80A {Mus musculus}
Probab=38.52 E-value=59 Score=33.94 Aligned_cols=46 Identities=9% Similarity=-0.000 Sum_probs=39.0
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEe
Q 017906 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIH 48 (364)
Q Consensus 1 MkI~VKtl~gk~~~ieV~~s~TV~dLK~kI~~~~g~~~ip~~~qkLif 48 (364)
|.+.|..++|....|+|+...|+.+|-..|+...|. ...+..-|.|
T Consensus 264 i~~~V~llDgt~~~~~vds~Tt~~ell~~V~~~LgL--~e~~~FgL~~ 309 (655)
T 3pvl_A 264 IMLPVTFMDGTTKTLLTDSATTARELCNALADKISL--KDRFGFSLYI 309 (655)
T ss_dssp EEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTTC--SSCTTEEEEE
T ss_pred eEEEEEecCCceEEEEEccCCcHHHHHHHHHHHcCC--cccccceeEE
Confidence 467899999999999999999999999999999993 3455667765
No 261
>3hk0_A Growth factor receptor-bound protein 10; GRB10, RA, PH, RAS-associating, pleckstrin-homology, adapter phosphoprotein, SH2 domain; 2.60A {Homo sapiens}
Probab=38.18 E-value=65 Score=29.58 Aligned_cols=57 Identities=14% Similarity=0.087 Sum_probs=37.3
Q ss_pred EEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeC-------CeecCCCCChhhh
Q 017906 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQ-------GKVLKDVTTLEEN 62 (364)
Q Consensus 3 I~VKtl~gk~~~ieV~~s~TV~dLK~kI~~~~g~~~ip~~~qkLif~-------GkiL~D~~tL~d~ 62 (364)
|+|-.-+|....|.|++++|+.+|-..+..+.+ +..+.-..+|. -+.|+|...+-+.
T Consensus 11 vkv~~~d~ss~~l~V~~~mta~ev~~~l~~k~~---~~~~~~W~l~E~~~~l~lER~ledhE~V~ev 74 (256)
T 3hk0_A 11 VKVFSEDGTSKVVEILADMTARDLCQLLVYKSH---SVDDNSWTLVEHHPHLGLERCLEDHELVVQV 74 (256)
T ss_dssp EEEEETTSCEEEEEECTTCBHHHHHHHHHCCC----------EEEEEEETTTTEEEECCTTSBHHHH
T ss_pred EEEEecCCcEEEEEECCCCCHHHHHHHHHHhcC---CCCCCCEEEEEECCCcccccccccchhHHHH
Confidence 555567888999999999999999988888765 32222222322 3678887666544
No 262
>3u52_E Phenol hydroxylase component PHO; 4-helix bundle, dioxygen, hydrocarbons, oxidore; HET: MPO EPE; 1.95A {Pseudomonas stutzeri} PDB: 2inn_E* 2inp_E
Probab=38.16 E-value=96 Score=25.34 Aligned_cols=61 Identities=16% Similarity=0.196 Sum_probs=46.3
Q ss_pred EEEEeCCCCcHHHHHHHHHHH-hCCC----CCCCCCeEEEeCCeec--CCCCChhhhccCCCCEEEEE
Q 017906 13 FEIEVKPEDKVSDVKKNIETV-QGSD----VYPASQQMLIHQGKVL--KDVTTLEENKVAENSFVVVM 73 (364)
Q Consensus 13 ~~ieV~~s~TV~dLK~kI~~~-~g~~----~ip~~~qkLif~GkiL--~D~~tL~d~gIk~~s~I~v~ 73 (364)
+.+-|.++++..+|-+.+-.. .+.+ .|.-++-.+..+|+.. +.+++|.+.||..++.|.+.
T Consensus 40 ~~~p~pP~mpFg~lv~~vl~~~~~~hPDfa~idws~v~W~l~g~pftPD~~kSLaenG~~HKs~lrf~ 107 (119)
T 3u52_E 40 FALLVQPGMTFSALVDEILKPATAAHPDSAKADFLNAEWLLNDEPFTPKADASLKEQGIDHKSMLTVT 107 (119)
T ss_dssp EEEEECTTSBHHHHHHHTHHHHTTTSTTGGGCCTTSSEEEETTEEECCCTTSBTTTTTCCTTEEEEEE
T ss_pred eeecCCCCCCHHHHHHHhcchhhhcCCccccCCcchheEEECCccCCCChhhhHHHcCCCchheEEEe
Confidence 678899999999988776543 3311 1445566788899988 45799999999999988775
No 263
>1f2r_I Inhibitor of caspase-activated DNAse; alpha-beta roll, protein-protein complex, DNA binding protein; NMR {Mus musculus} SCOP: d.15.2.1
Probab=37.25 E-value=49 Score=26.27 Aligned_cols=49 Identities=12% Similarity=0.168 Sum_probs=32.6
Q ss_pred CcHHHHHHHHHHHhCCCCCCCC--CeEEE--eCCeecCCCCChhhhccCCCCEEEEEEe
Q 017906 21 DKVSDVKKNIETVQGSDVYPAS--QQMLI--HQGKVLKDVTTLEENKVAENSFVVVMLT 75 (364)
Q Consensus 21 ~TV~dLK~kI~~~~g~~~ip~~--~qkLi--f~GkiL~D~~tL~d~gIk~~s~I~v~v~ 75 (364)
.+..+|+.|...+++ ++.. ..+|+ ..|..++|+.-+..+ . +.++.+++.
T Consensus 37 ~SL~EL~~K~~~~l~---l~~~~~~~~lvLeeDGT~VddEeYF~tL--p-~nT~lmvL~ 89 (100)
T 1f2r_I 37 SSLEELRSKACELLA---IDKSLTPITLVLAEDGTIVDDDDYFLCL--P-SNTKFVALA 89 (100)
T ss_dssp SSHHHHHHHHHHHHC---CCGGGCSCEEEESSSCCBCCSSSSSSSS--C-SCCEEEEEC
T ss_pred CCHHHHHHHHHHHhc---cCCCCCceEEEEeeCCcEEechhHhhcC--C-CCCEEEEEc
Confidence 479999999999999 6542 34554 479999877655543 2 344444443
No 264
>4gmv_A RAS-associated and pleckstrin homology domains-CO protein 1; RA-PH, coiled-coil region, RAS-association domain, pleckstri homology domain; 2.40A {Homo sapiens} PDB: 4gn1_A
Probab=37.12 E-value=1.1e+02 Score=28.48 Aligned_cols=69 Identities=16% Similarity=0.162 Sum_probs=46.0
Q ss_pred EEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEE--eC----CeecCCCCChhhh----ccCCCCEEEE
Q 017906 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLI--HQ----GKVLKDVTTLEEN----KVAENSFVVV 72 (364)
Q Consensus 3 I~VKtl~gk~~~ieV~~s~TV~dLK~kI~~~~g~~~ip~~~qkLi--f~----GkiL~D~~tL~d~----gIk~~s~I~v 72 (364)
|.|-..+|....|.|++++|+.||-+.+..+.++ ...+.--|+ |. -+.|+|...|-+. ....++.+++
T Consensus 34 vkv~~~D~ss~~l~V~~~~TA~dv~~~L~~k~~~--~~~~~W~L~E~~~~l~lER~ledhE~V~dvl~~W~~ds~n~l~f 111 (281)
T 4gmv_A 34 IRVHMSDDSSKTMMVDERQTVRQVLDNLMDKSHC--GYSLDWSLVETVSELQMERIFEDHENLVENLLNWTRDSQNKLIF 111 (281)
T ss_dssp EEEEETTSCEEEEEEETTCBHHHHHHHHHHHSCC--CCCTTCEEEEEEGGGTEEEECCTTSBHHHHHTTSCTTCCCEEEE
T ss_pred EEEEecCCCEEEEEECCCCcHHHHHHHHHHhcCC--CCCCCeEEEEEcCCccceeccccchhHHHHHHhcccCCCceEEE
Confidence 4455567889999999999999999988888773 223333332 21 2678888777654 3445555544
Q ss_pred E
Q 017906 73 M 73 (364)
Q Consensus 73 ~ 73 (364)
.
T Consensus 112 ~ 112 (281)
T 4gmv_A 112 M 112 (281)
T ss_dssp E
T ss_pred E
Confidence 3
No 265
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal protein, nucleus, phosphoprotein, repressor, telomere; HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Probab=35.34 E-value=36 Score=29.45 Aligned_cols=45 Identities=18% Similarity=0.285 Sum_probs=36.8
Q ss_pred cchHHHHHHH-HHcCCCCCCH---HHHHHHHHHHcCC-hHHHHHHHHhC--CCCC
Q 017906 170 SNLEATVQQI-LDMGGGSWDR---ETVIRALRAAYNN-PERAVEYLYSG--IPEQ 217 (364)
Q Consensus 170 ~~~e~~V~~i-~~MG~~~f~r---~qv~~ALrAafnN-pdRAvEyL~~G--IP~~ 217 (364)
+..+..|+-| .+-| |.+ ++|+.||+..-.+ |..=++||..| ||.+
T Consensus 61 s~~~~Lv~~l~~e~G---i~~~fs~~Ii~ALs~tsM~~p~~VL~~l~~GkgiP~N 112 (168)
T 3cz6_A 61 SQAEKLVQDLCDETG---IRKNFSTSILTCLSGDLMVFPRYFLNMFKDNVNPPPN 112 (168)
T ss_dssp TCHHHHHHHHHHHHC---BCHHHHHHHHHHTTTCGGGHHHHHHHHHHHTCSSCTT
T ss_pred hhHHHHHHHHHHHhC---cccccHHHHHHHhcCCcccCHHHHHHHHHhCCCCCCC
Confidence 4567788888 6788 865 5788899999999 99888999999 7765
No 266
>2kkc_A Sequestosome-1; P62, PB1, autophagy, ubiquitin-proteasome system, NF-KB signaling, alternative splicing, apoptosis, cytoplasm, differentiation; NMR {Rattus norvegicus} PDB: 2ktr_B
Probab=35.19 E-value=69 Score=25.37 Aligned_cols=54 Identities=2% Similarity=0.017 Sum_probs=33.0
Q ss_pred CcHHHHHHHHHHHhCCCCCCCCCeEEEeCC---ee--cC-CCCChhhhccCCCCEEEEEEec
Q 017906 21 DKVSDVKKNIETVQGSDVYPASQQMLIHQG---KV--LK-DVTTLEENKVAENSFVVVMLTK 76 (364)
Q Consensus 21 ~TV~dLK~kI~~~~g~~~ip~~~qkLif~G---ki--L~-D~~tL~d~gIk~~s~I~v~v~k 76 (364)
.|...|+.+|...+.. +......|.|.. -. +. |+.....+.......+.|.+..
T Consensus 42 ~s~~~L~~~V~~lFp~--l~~~~f~l~Y~DedGDlItiSsDeEL~~Al~~~~~~~lRlyVke 101 (102)
T 2kkc_A 42 GPCERLLSRVAVLFPA--LRPGGFQAHYRAERGDLVAFSSDEELTMAMSYVKDDIFRIYIKE 101 (102)
T ss_dssp CHHHHHHHHHHHHCTT--SCSSCEEEEEECTTCCEEEECSHHHHHHHHHHCCSSEEEEEEEE
T ss_pred ccHHHHHHHHHHHccc--cCCCcEEEEEECCCCCEEEecCHHHHHHHHHhcCCCeEEEEEEc
Confidence 4899999999999641 445567888853 22 22 2333333334445677777654
No 267
>1wz3_A Autophagy 12B, ATG12B, APG12B; ubiquitin-fold, plant protein; 1.80A {Arabidopsis thaliana} SCOP: d.15.1.7
Probab=34.85 E-value=73 Score=24.87 Aligned_cols=58 Identities=10% Similarity=0.047 Sum_probs=40.9
Q ss_pred EEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeec-CCCCChhhh--ccCCCCEEEEEEec
Q 017906 14 EIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVL-KDVTTLEEN--KVAENSFVVVMLTK 76 (364)
Q Consensus 14 ~ieV~~s~TV~dLK~kI~~~~g~~~ip~~~qkLif~GkiL-~D~~tL~d~--gIk~~s~I~v~v~k 76 (364)
.+-|..+.||..|...|.++.+ +. .+-|+.+...+ ..+.+++++ ..+++.+++|..+.
T Consensus 31 KflV~~~~t~~~~~~~lRkrL~---l~--alFlyvn~~~~Ps~d~~m~~LY~~~kdDGfLyi~Ys~ 91 (96)
T 1wz3_A 31 KFKVSGSDKFANVIDFLRRQLH---SD--SLFVYVNSAFSPNPDESVIDLYNNFGFDGKLVVNYAC 91 (96)
T ss_dssp EEEEETTSBTHHHHHHHHHHHT---CS--SCEEEEEEEECCCTTSBHHHHHHHHCBTTBEEEEEES
T ss_pred EEEeCCCCcHHHHHHHHHHhcC---Cc--eEEEEECCcccCChhhHHHHHHHHhCCCCEEEEEEeC
Confidence 4567788999999999999988 55 55554444244 557777766 33457788887654
No 268
>3r8s_T 50S ribosomal protein L23; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_T 3j19_T 2wwq_T 3oat_T* 3oas_T* 3ofd_T 3ofc_T 3ofr_T* 3ofz_T* 3og0_T 3ofq_T 3r8t_T 2j28_T 3e1b_M 3e1d_M 3iy9_T 3i1n_T 1p85_R 1p86_R 1vs8_T ...
Probab=34.81 E-value=76 Score=24.68 Aligned_cols=41 Identities=15% Similarity=0.252 Sum_probs=34.2
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeE-EEeCCeec
Q 017906 10 GTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQM-LIHQGKVL 53 (364)
Q Consensus 10 gk~~~ieV~~s~TV~dLK~kI~~~~g~~~ip~~~qk-Lif~GkiL 53 (364)
..++.|.|+...|=.++|+.|+..++ +.+.... |++.||.=
T Consensus 27 ~n~~~F~V~~~AnK~eIK~AVE~lf~---VkV~~VnT~~~~gK~k 68 (93)
T 3r8s_T 27 SNTIVLKVAKDATKAEIKAAVQKLFE---VEVEVVNTLVVKGKVK 68 (93)
T ss_dssp TSEEEEEECSSCCHHHHHHHHHHHSC---CCCCEEEEEEECCCBC
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHcC---CceEEEEEEEeCCcee
Confidence 35899999999999999999999999 7777774 46777643
No 269
>1v8c_A MOAD related protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, protein binding; 1.60A {Thermus thermophilus} SCOP: d.15.3.1 d.129.5.1
Probab=34.71 E-value=93 Score=26.58 Aligned_cols=56 Identities=11% Similarity=0.174 Sum_probs=37.7
Q ss_pred EEEeCCCCcHHHHHHHHHHHhCCCCCC---------CCCeEEEeCCeecCCCCChhhhccCCCCEEEEE
Q 017906 14 EIEVKPEDKVSDVKKNIETVQGSDVYP---------ASQQMLIHQGKVLKDVTTLEENKVAENSFVVVM 73 (364)
Q Consensus 14 ~ieV~~s~TV~dLK~kI~~~~g~~~ip---------~~~qkLif~GkiL~D~~tL~d~gIk~~s~I~v~ 73 (364)
.++++. .||.+|.+.+...+.. +. .....+..||+.+.... -.++-|++|+.|.++
T Consensus 17 ~~ev~~-~TV~dLl~~L~~~~p~--l~~~l~~~~~l~~~v~VaVNg~~v~~~~-~~dt~L~dGDeVai~ 81 (168)
T 1v8c_A 17 QLELPG-ATVGEVLENLVRAYPA--LKEELFEGEGLAERVSVFLEGRDVRYLQ-GLSTPLSPGATLDLF 81 (168)
T ss_dssp EEECCC-SBHHHHHHHHHHHCGG--GHHHHEETTEECTTCEEEETTEEGGGTT-GGGCBCCTTCEEEEE
T ss_pred eEEECC-CcHHHHHHHHHhhChh--hhhhhhcccccCCcEEEEECCEECCCcC-CCccCCCCCCEEEEE
Confidence 456665 8999999999877320 10 23456778998876432 234568999998886
No 270
>2ktr_A Sequestosome-1; autophagy, NF-KB signaling, HOMO-oligomer, PB1 dimer, signaling protein, transport protein; NMR {Rattus norvegicus}
Probab=33.53 E-value=65 Score=26.26 Aligned_cols=54 Identities=2% Similarity=0.011 Sum_probs=32.9
Q ss_pred CcHHHHHHHHHHHhCCCCCCCCCeEEEeCC---ee--cC-CCCChhhhccCCCCEEEEEEec
Q 017906 21 DKVSDVKKNIETVQGSDVYPASQQMLIHQG---KV--LK-DVTTLEENKVAENSFVVVMLTK 76 (364)
Q Consensus 21 ~TV~dLK~kI~~~~g~~~ip~~~qkLif~G---ki--L~-D~~tL~d~gIk~~s~I~v~v~k 76 (364)
.+...|+.+|...+.. +......|.|.. -. +. |+.....+.......+.|.+..
T Consensus 57 ~s~~~L~~kV~~lFp~--L~~~~f~l~YkDEdGDlItISsDeEL~~Al~~~~~~~lRlyVke 116 (117)
T 2ktr_A 57 GPSERLLSRVAVLFPA--LRPGGFQAHYRAERGDLVAFSSDEELTMAMSYVKDDIFRIYIKE 116 (117)
T ss_dssp CHHHHHHHHHHHHCTT--SCSSCEEEEEECTTCCEEEECSHHHHHHHHHHCCSSEEEEEEEE
T ss_pred CCHHHHHHHHHHHccc--cCCCcEEEEEECCCCCEEEecCHHHHHHHHHhcCCCeEEEEEEe
Confidence 4899999999999841 445667888853 22 22 3333333334345677777654
No 271
>4gdk_A Ubiquitin-like protein ATG12; protein-protein conjugate, protein-protein complex, ubiquiti protein, E3 ligase, ubiquitin-like fold; 2.70A {Homo sapiens} PDB: 4gdl_A
Probab=33.33 E-value=94 Score=23.96 Aligned_cols=60 Identities=10% Similarity=0.054 Sum_probs=42.6
Q ss_pred EEEeCCCCcHHHHHHHHHHHhCCCCCCCCC-eEEEeCCeec-CCCCChhhh--ccCCCCEEEEEEec
Q 017906 14 EIEVKPEDKVSDVKKNIETVQGSDVYPASQ-QMLIHQGKVL-KDVTTLEEN--KVAENSFVVVMLTK 76 (364)
Q Consensus 14 ~ieV~~s~TV~dLK~kI~~~~g~~~ip~~~-qkLif~GkiL-~D~~tL~d~--gIk~~s~I~v~v~k 76 (364)
.+-|..+.||..+...|.++.+ +.+++ +-|+.+...+ ..+.++.++ ..+++.+++|....
T Consensus 23 KflVp~~~tv~~~~~~lRkrL~---l~~~~alFlyVnn~~~P~~d~~~~~Ly~~~k~DGfLyv~Ys~ 86 (91)
T 4gdk_A 23 KWAVERTRTIQGLIDFIKKFLK---LVASEQLFIYVNQSFAPSPDQEVGTLYECFGSDGKLVLHYCK 86 (91)
T ss_dssp EEEEETTCBHHHHHHHHHHHTT---CCSSSCCEEEETTTBCCCTTCBHHHHHHHHCBTTEEEEEEES
T ss_pred EEEcCCCCCHHHHHHHHHHHhC---CCCCCeEEEEECCccCCChhhHHHHHHHHhCCCCEEEEEEeC
Confidence 4667889999999999999988 65554 4555566555 446677665 23478888887654
No 272
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=33.00 E-value=26 Score=31.49 Aligned_cols=26 Identities=12% Similarity=0.265 Sum_probs=23.6
Q ss_pred hHHHHHHHHHcCCCCCCHHHHHHHHHHHc
Q 017906 172 LEATVQQILDMGGGSWDRETVIRALRAAY 200 (364)
Q Consensus 172 ~e~~V~~i~~MG~~~f~r~qv~~ALrAaf 200 (364)
.++++.-|+.+| |.+.++.+|++...
T Consensus 164 ~~ea~~AL~~LG---y~~~ea~~av~~~~ 189 (212)
T 2ztd_A 164 RSPVVEALVGLG---FAAKQAEEATDTVL 189 (212)
T ss_dssp HHHHHHHHHHTT---CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC---CCHHHHHHHHHHHH
Confidence 578999999999 99999999998863
No 273
>1n62_A Carbon monoxide dehydrogenase small chain; CODH, molybdenum, molybdopterin, oxidoreductase; HET: CUB MCN FAD; 1.09A {Oligotropha carboxidovorans} SCOP: a.56.1.1 d.15.4.2 PDB: 1n5w_A* 1n61_A* 1n60_A* 1n63_A* 1zxi_A*
Probab=31.20 E-value=35 Score=29.39 Aligned_cols=27 Identities=15% Similarity=0.287 Sum_probs=22.5
Q ss_pred EEEEEeCCCcEEEEEeCCCCcHHHHHHH
Q 017906 2 KVFVKTLKGTHFEIEVKPEDKVSDVKKN 29 (364)
Q Consensus 2 kI~VKtl~gk~~~ieV~~s~TV~dLK~k 29 (364)
+|+|+ ++|+.+.++++++.||.++-..
T Consensus 5 ~i~~~-vNG~~~~~~v~~~~tLLd~LR~ 31 (166)
T 1n62_A 5 HIELT-INGHPVEALVEPRTLLIHFIRE 31 (166)
T ss_dssp EEEEE-ETTEEEEEEECTTCBHHHHHHH
T ss_pred eEEEE-ECCEEEEEecCCCCcHHHHHHH
Confidence 56666 7899999999999999987654
No 274
>3hrd_D Nicotinate dehydrogenase small FES subunit; selenium ligand, iron, iron-sulfur, metal-binding, oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium barkeri}
Probab=30.59 E-value=35 Score=29.24 Aligned_cols=27 Identities=19% Similarity=0.427 Sum_probs=22.5
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHH
Q 017906 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKK 28 (364)
Q Consensus 1 MkI~VKtl~gk~~~ieV~~s~TV~dLK~ 28 (364)
|+|+|+ ++|+.+.++++++.|+.++-.
T Consensus 4 ~~i~~~-vNG~~~~v~v~p~~tLLd~LR 30 (160)
T 3hrd_D 4 ITINLN-LNGEARSIVTEPNKRLLDLLR 30 (160)
T ss_dssp EEEEEE-ETTEEEEEEECSSSBHHHHHH
T ss_pred ceEEEE-ECCEEEEEecCCCCCHHHHHH
Confidence 367776 789999999999999998754
No 275
>2ekf_A Ancient ubiquitous protein 1; CUE, ubiquitin ligase complex, ubiquitin-conjugating enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.54 E-value=97 Score=22.32 Aligned_cols=40 Identities=15% Similarity=0.205 Sum_probs=35.8
Q ss_pred cchHHHHHHHHHc--CCCCCCHHHHHHHHHHHcCChHHHHHHHHhC
Q 017906 170 SNLEATVQQILDM--GGGSWDRETVIRALRAAYNNPERAVEYLYSG 213 (364)
Q Consensus 170 ~~~e~~V~~i~~M--G~~~f~r~qv~~ALrAafnNpdRAvEyL~~G 213 (364)
++++.+|..+.+| - ++++.+..-|+-. +|.+.-+|=+|.|
T Consensus 11 ~ql~~mv~~V~~mfP~---vp~~~I~~DL~~T-gsVe~TienILeG 52 (61)
T 2ekf_A 11 VQLATLAQRVKEVLPH---VPLGVIQRDLAKT-GCVDLTITNLLEG 52 (61)
T ss_dssp CCHHHHHHHHHHHCSS---SCHHHHHHHHHTS-CCHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHcCC---CCHHHHHHHHHHh-CCHHHHHHHHHcC
Confidence 3588999999999 4 7999999999876 5999999999999
No 276
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=29.87 E-value=29 Score=30.79 Aligned_cols=25 Identities=12% Similarity=0.347 Sum_probs=23.2
Q ss_pred hHHHHHHHHHcCCCCCCHHHHHHHHHHH
Q 017906 172 LEATVQQILDMGGGSWDRETVIRALRAA 199 (364)
Q Consensus 172 ~e~~V~~i~~MG~~~f~r~qv~~ALrAa 199 (364)
.++++.-|+.+| |.+.++.+|++..
T Consensus 160 ~~ea~~AL~~LG---y~~~ea~~av~~~ 184 (203)
T 1cuk_A 160 EQEAVARLVALG---YKPQEASRMVSKI 184 (203)
T ss_dssp HHHHHHHHHHHT---CCHHHHHHHHHHS
T ss_pred HHHHHHHHHHcC---CCHHHHHHHHHHh
Confidence 578999999999 9999999999986
No 277
>3lxf_A Ferredoxin; iron, iron-sulfur, metal-binding, metal protein; 2.30A {Novosphingobium aromaticivorans} SCOP: d.15.4.0
Probab=29.67 E-value=54 Score=25.48 Aligned_cols=28 Identities=25% Similarity=0.430 Sum_probs=24.4
Q ss_pred EEEEEeCCCcEEEEEeCCCCcHHHHHHH
Q 017906 2 KVFVKTLKGTHFEIEVKPEDKVSDVKKN 29 (364)
Q Consensus 2 kI~VKtl~gk~~~ieV~~s~TV~dLK~k 29 (364)
+|+|...+|+.++|++....||.+.-..
T Consensus 2 ~vt~~~~~G~~~~~~~~~g~tll~a~~~ 29 (104)
T 3lxf_A 2 AILVTTRDGTRTEIQAEPGLSLMEALRD 29 (104)
T ss_dssp EEEEECTTSCEEEEECCTTSBHHHHHHH
T ss_pred EEEEEeCCCCEEEEEECCCChHHHHHHH
Confidence 7899999999999999999999886543
No 278
>2dam_A ETEA protein; KIAA0887, UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=29.60 E-value=1.2e+02 Score=21.84 Aligned_cols=43 Identities=19% Similarity=0.092 Sum_probs=35.3
Q ss_pred cchHHHHHHHHHcCCCCCCHHHHHHHHHHHcCChHHHHHHHHhC
Q 017906 170 SNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 213 (364)
Q Consensus 170 ~~~e~~V~~i~~MG~~~f~r~qv~~ALrAafnNpdRAvEyL~~G 213 (364)
.+.++.|.+.+++-|. =+.+.++.-|..+-+|.++||...+.+
T Consensus 16 ~~~~e~i~qF~~ITg~-~d~~~A~~~Le~~~WnLe~Av~~ff~~ 58 (67)
T 2dam_A 16 QEQTEKLLQFQDLTGI-ESMDQCRHTLEQHNWNIEAAVQDRLNE 58 (67)
T ss_dssp HHHHHHHHHHHHHHCC-SCHHHHHHHHHHHTSCHHHHHHHHHHS
T ss_pred hhHHHHHHHHHHHhCC-CCHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 3467899999998632 378899999999999999999877665
No 279
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=28.96 E-value=22 Score=36.52 Aligned_cols=48 Identities=13% Similarity=0.125 Sum_probs=42.3
Q ss_pred HHHHHHHHHHhCccchHHHHHHHhhhCHHHHHHHHHCHHHHHHHhcCC
Q 017906 285 QFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP 332 (364)
Q Consensus 285 qf~~lR~~vq~nP~~L~~~Lqql~~~nP~L~~~I~~n~e~Fl~~l~e~ 332 (364)
..++|+++++.+=.-|.-=+..|..-||+|+..|..||.+++.+|.+.
T Consensus 24 y~~~i~~~~~~~~~~l~v~~~~l~~~~~~l~~~l~~~p~~~~~~~~~a 71 (595)
T 3f9v_A 24 YIERINELVAYRKKSLIIEFSDVLSFNENLAYEIINNTKIILPILEGA 71 (595)
T ss_dssp THHHHHHHHHHTCSSCCEEHHHHHTTCTTHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCcEEEEEhHHHhhhCHHHHHHHHHCHHHHHHHHHHH
Confidence 568899999888777777788999999999999999999999998664
No 280
>1t3q_A Quinoline 2-oxidoreductase small subunit; QOR, molybdenum, MCD; HET: FAD MCN; 1.80A {Pseudomonas putida} SCOP: a.56.1.1 d.15.4.2
Probab=28.95 E-value=39 Score=28.87 Aligned_cols=28 Identities=18% Similarity=0.350 Sum_probs=22.9
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHH
Q 017906 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKN 29 (364)
Q Consensus 1 MkI~VKtl~gk~~~ieV~~s~TV~dLK~k 29 (364)
|.|+|+ ++|+.+.++++++.||.++-..
T Consensus 10 m~i~~~-ing~~~~~~v~~~~tlL~~Lr~ 37 (168)
T 1t3q_A 10 MRISAT-INGKPRVFYVEPRMHLADALRE 37 (168)
T ss_dssp EEEEEE-ETTEEEEEEECTTSBHHHHHHH
T ss_pred ceEEEE-ECCEEEEEecCCCCcHHHHHHh
Confidence 456666 7899999999999999887654
No 281
>2ejs_A Autocrine motility factor receptor, isoform 2; CUE, ubiquitin ligase complex, ubiquitin-conjugating enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.59 E-value=1.4e+02 Score=21.26 Aligned_cols=40 Identities=25% Similarity=0.321 Sum_probs=35.7
Q ss_pred cchHHHHHHHHHc--CCCCCCHHHHHHHHHHHcCChHHHHHHHHhC
Q 017906 170 SNLEATVQQILDM--GGGSWDRETVIRALRAAYNNPERAVEYLYSG 213 (364)
Q Consensus 170 ~~~e~~V~~i~~M--G~~~f~r~qv~~ALrAafnNpdRAvEyL~~G 213 (364)
+..+.+|+.+.+| - ++++.+..-|+-.- |.+.-+|=+|.|
T Consensus 11 ~q~~~mv~~V~~mfP~---vp~~~I~~DL~~Tg-sVe~TienILeG 52 (58)
T 2ejs_A 11 SQLNAMAHQIQEMFPQ---VPYHLVLQDLQLTR-SVEITTDNILEG 52 (58)
T ss_dssp CHHHHHHHHHHHHCCS---SCHHHHHHHHHHHC-SHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCC---CCHHHHHHHHHHhC-CHHHHHHHHHhc
Confidence 3588999999999 4 79999999998865 999999999988
No 282
>2nvu_B Maltose binding protein/NEDD8-activating enzyme E1 catalytic subunit chimera; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: c.111.1.2 c.94.1.1
Probab=27.49 E-value=81 Score=33.29 Aligned_cols=60 Identities=13% Similarity=0.157 Sum_probs=39.9
Q ss_pred EEEEeCCCCcHHHHHHHHHHHhCCCCCCCC--------CeEEEeCCe--e----cC--CCCChhhhccCCCCEEEEE
Q 017906 13 FEIEVKPEDKVSDVKKNIETVQGSDVYPAS--------QQMLIHQGK--V----LK--DVTTLEENKVAENSFVVVM 73 (364)
Q Consensus 13 ~~ieV~~s~TV~dLK~kI~~~~g~~~ip~~--------~qkLif~Gk--i----L~--D~~tL~d~gIk~~s~I~v~ 73 (364)
..+.|+.+.|+.+|-..|+.+.... +... ..+++|... . .+ -+++|+++||++|+.|.|.
T Consensus 714 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ly~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~ 789 (805)
T 2nvu_B 714 QNIQFSPSAKLQEVLDYLTNSASLQ-MKSPAITATLEGKNRTLYLQSVTSIEERTRPNLSKTLKELGLVDGQELAVA 789 (805)
T ss_dssp EEEEECTTSBHHHHHHHHHHCTTTC-CSSCEEEEEETTEEEEEECCSSHHHHHHHGGGGGSBTTTTTCCTTCEEEEE
T ss_pred EEEEECCcChHHHHHHHHHhhhccC-cccceEEEEccCCCcEEEecCccchhhhhHhhhcCCHHHcCCCCCCEEEEE
Confidence 5577888889999988888863310 2111 235666532 1 11 2688999999999998875
No 283
>1ffv_A CUTS, iron-sulfur protein of carbon monoxide dehydrogenase; hydrolase; HET: ARO PCD FAD; 2.25A {Hydrogenophaga pseudoflava} SCOP: a.56.1.1 d.15.4.2 PDB: 1ffu_A*
Probab=27.45 E-value=44 Score=28.62 Aligned_cols=27 Identities=19% Similarity=0.284 Sum_probs=22.2
Q ss_pred EEEEEeCCCcEEEEEeCCCCcHHHHHHH
Q 017906 2 KVFVKTLKGTHFEIEVKPEDKVSDVKKN 29 (364)
Q Consensus 2 kI~VKtl~gk~~~ieV~~s~TV~dLK~k 29 (364)
.|+|+ ++|+.+.++++++.||.++-..
T Consensus 5 ~i~~~-vNG~~~~~~v~~~~tLLd~LR~ 31 (163)
T 1ffv_A 5 IITVN-VNGKAQEKAVEPRTLLIHFLRE 31 (163)
T ss_dssp EEEEE-ETTEEEEEEECTTCBHHHHHHH
T ss_pred eEEEE-ECCEEEEEecCCCCcHHHHHHh
Confidence 56665 7899999999999999987554
No 284
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=27.24 E-value=54 Score=33.25 Aligned_cols=69 Identities=12% Similarity=0.245 Sum_probs=51.7
Q ss_pred EEEEeCC--CcEEE----EEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeC----C--eecC-CCCChhhh--ccCCC
Q 017906 3 VFVKTLK--GTHFE----IEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQ----G--KVLK-DVTTLEEN--KVAEN 67 (364)
Q Consensus 3 I~VKtl~--gk~~~----ieV~~s~TV~dLK~kI~~~~g~~~ip~~~qkLif~----G--kiL~-D~~tL~d~--gIk~~ 67 (364)
|++|..+ .+++. +-|+.+++|.+|-..|.+..| +|++.--++|. + ..|+ .+.++.++ .|.+|
T Consensus 133 lFlK~yDp~~q~L~~~G~~~v~~~~kv~~l~~~i~~~~g---~p~dt~l~lyEEi~~~~ie~l~~~~~t~~~~~~eL~~G 209 (530)
T 2ylm_A 133 LFLKMYDPKTRSLNYCGHIYTPISCKIRDLLPVMCDRAG---FIQDTSLILYEEVKPNLTERIQDYDVSLDKALDELMDG 209 (530)
T ss_dssp EEEEEEETTTTEEEEEEEEEEETTCBGGGTHHHHHHHHT---CCTTCCEEEEEEEETTEEEECCCSSSBHHHHSTTCCTT
T ss_pred EEEEeeCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHcC---CCCCCceEEEEecCCCceeEcccccccHHHHHhcccCC
Confidence 6666543 33433 578899999999999999999 88876555554 3 3467 57899999 99999
Q ss_pred CEEEEEE
Q 017906 68 SFVVVML 74 (364)
Q Consensus 68 s~I~v~v 74 (364)
+.|++-.
T Consensus 210 dII~fQ~ 216 (530)
T 2ylm_A 210 DIIVFQK 216 (530)
T ss_dssp EEEEEEE
T ss_pred CEEEEEe
Confidence 9877654
No 285
>3myf_A Sensor protein; HPT, histidine kinase, PSI, MCSG, structural genomics, midwe for structural genomics, protein structure initiative, TRAN; HET: MSE; 1.80A {Shewanella SP}
Probab=27.23 E-value=54 Score=26.24 Aligned_cols=44 Identities=23% Similarity=0.256 Sum_probs=32.0
Q ss_pred HHHHHHHHHhCccchHHHHHHHhhhCHHHHHHHH-----HCHHHHHHHh
Q 017906 286 FQALRTMVQANPQILQPMLQELGKQNPHLMRLIQ-----EHQTDFLRLI 329 (364)
Q Consensus 286 f~~lR~~vq~nP~~L~~~Lqql~~~nP~L~~~I~-----~n~e~Fl~~l 329 (364)
++...++...|++++..||+++-.++|+-++.|+ ++-+.+.++.
T Consensus 8 ~~~~l~~~~g~~~L~~~lL~~fl~~~~~~~~~l~~a~~~~d~~~l~~~a 56 (119)
T 3myf_A 8 WDLCLTQANHKSNLALEMLKMLLDSLPETVEKIQTALGQNDQATMLSTI 56 (119)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3445566778888888999988888888888776 4455655554
No 286
>1vdl_A Ubiquitin carboxyl-terminal hydrolase 25; UBA domain, mouse cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.5.2.1
Probab=26.51 E-value=1.6e+02 Score=22.15 Aligned_cols=41 Identities=24% Similarity=0.335 Sum_probs=32.6
Q ss_pred hHHHHHHHHHcCCCCCCHHHHHHHHHHHcCChHHHHHHHHhC
Q 017906 172 LEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 213 (364)
Q Consensus 172 ~e~~V~~i~~MG~~~f~r~qv~~ALrAafnNpdRAvEyL~~G 213 (364)
.+..+++|-|.- |--|-.-...||+|+.+|...||-+|..-
T Consensus 24 ~q~lLnQLrEIT-GiqD~~~L~~ALkas~Gdl~~AV~~LT~~ 64 (80)
T 1vdl_A 24 QQTFLNQLREIT-GINDAQILQQALKDSNGNLELAVAFLTAK 64 (80)
T ss_dssp HHHHHHHHHHHS-CCCCHHHHHHHHHHHTSCHHHHHHHHHTT
T ss_pred HHHHHHHHHHHh-CCCcHHHHHHHHHhccCCHHHHHHHHhcc
Confidence 456788999984 22366667789999999999999999754
No 287
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=26.31 E-value=45 Score=31.88 Aligned_cols=29 Identities=24% Similarity=0.411 Sum_probs=25.6
Q ss_pred cchHHHHHHHHHcCCCCCCHHHHHHHHHHHcC
Q 017906 170 SNLEATVQQILDMGGGSWDRETVIRALRAAYN 201 (364)
Q Consensus 170 ~~~e~~V~~i~~MG~~~f~r~qv~~ALrAafn 201 (364)
.++|+.|..+.+|| |++++|.++|..-..
T Consensus 44 ~~~e~~l~~L~d~G---fs~~~i~~il~~~P~ 72 (335)
T 4fp9_B 44 LELERVMSSLLDMG---FSNAHINELLSVRRG 72 (335)
T ss_dssp HHHHHHHHHHHHTT---CCHHHHHHHHHHCSS
T ss_pred ccHHHHHHHHHHCC---CCHHHHHHHHHhCcc
Confidence 46899999999999 999999999987544
No 288
>2dzl_A Protein FAM100B; UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.86 E-value=1.3e+02 Score=21.63 Aligned_cols=36 Identities=19% Similarity=0.228 Sum_probs=31.7
Q ss_pred HHHHHHHHc-CCCCCCHHHHHHHHHHHcCChHHHHHHHHh
Q 017906 174 ATVQQILDM-GGGSWDRETVIRALRAAYNNPERAVEYLYS 212 (364)
Q Consensus 174 ~~V~~i~~M-G~~~f~r~qv~~ALrAafnNpdRAvEyL~~ 212 (364)
+.|.+.+++ | =+++..+.-|.++-+|.++||...+.
T Consensus 19 ~~i~qF~~iTg---~~~~~A~~~Le~~~WdLe~Al~~ff~ 55 (66)
T 2dzl_A 19 VMINQFVLAAG---CAADQAKQLLQAAHWQFETALSTFFQ 55 (66)
T ss_dssp HHHHHHHHHHC---CCHHHHHHHHHTTTTCHHHHHHHHHT
T ss_pred HHHHHHHHHcC---CCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 789999997 5 68999999999999999999987764
No 289
>3us6_A Histidine-containing phosphotransfer protein type MTHPT1; helix bundle, plant hormone signal transduction, cytokinin S transduction; 1.45A {Medicago truncatula}
Probab=25.45 E-value=31 Score=29.01 Aligned_cols=37 Identities=14% Similarity=0.276 Sum_probs=31.7
Q ss_pred HHHHHHHHHHH-hCccchHHHHHHHhhhCHHHHHHHHH
Q 017906 284 QQFQALRTMVQ-ANPQILQPMLQELGKQNPHLMRLIQE 320 (364)
Q Consensus 284 pqf~~lR~~vq-~nP~~L~~~Lqql~~~nP~L~~~I~~ 320 (364)
.+|.+||++-. .||+++..||...-...|..++.|.+
T Consensus 25 ~~f~qL~~L~~~~~~~~~~ell~~Fl~d~~~~l~~L~~ 62 (153)
T 3us6_A 25 GQFLQLQQLQDENNPEFVFEVVSLFFDDSERILKDLSF 62 (153)
T ss_dssp HHHHHHHHTCBTTBTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67999999964 58999999999999999888887765
No 290
>3tve_T 50S ribosomal protein L23; RNA, ribosome, tRNA, translation, mRNA; 3.10A {Thermus thermophilus} PDB: 3pyr_T 3pyo_T 3pyv_T 3pyt_T 3tvh_T 1n88_A 1vsa_R 1vsp_R 2hgj_W 2hgq_W 2hgu_W 2j01_X 2j03_X 2jl6_X 2jl8_X 2v47_X 2v49_X 2wdi_X 2wdj_X 2wdl_X ...
Probab=25.41 E-value=1e+02 Score=23.93 Aligned_cols=40 Identities=20% Similarity=0.273 Sum_probs=33.1
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeE-EEeCCee
Q 017906 10 GTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQM-LIHQGKV 52 (364)
Q Consensus 10 gk~~~ieV~~s~TV~dLK~kI~~~~g~~~ip~~~qk-Lif~Gki 52 (364)
..++.|.|+...|=.++|+.|+..++ +.+.... |+..||.
T Consensus 21 ~n~~~F~V~~~AnK~qIK~aVe~lf~---VkV~~VnT~~~~gK~ 61 (92)
T 3tve_T 21 EGKYTFWVHPKATKTEIKNAVETAFK---VKVVKVNTLHVRGKK 61 (92)
T ss_dssp TTEEEEEECTTCCHHHHHHHHHHHTT---CCEEEEEEEEECCCE
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhC---CceeeeeeeeeCCce
Confidence 36899999999999999999999999 6676664 4677754
No 291
>3iqt_A Signal transduction histidine-protein kinase BARA; histidine phosphotransfer domain, HTP, structural genomics, protein structure initiative; HET: MSE BTB; 1.40A {Escherichia coli}
Probab=24.32 E-value=41 Score=27.23 Aligned_cols=35 Identities=20% Similarity=0.224 Sum_probs=29.2
Q ss_pred HHHHHHHHHhCccchHHHHHHHhhhCHHHHHHHHH
Q 017906 286 FQALRTMVQANPQILQPMLQELGKQNPHLMRLIQE 320 (364)
Q Consensus 286 f~~lR~~vq~nP~~L~~~Lqql~~~nP~L~~~I~~ 320 (364)
.+.+.++...||+++..||+++-.++|+-++.|++
T Consensus 17 ~~~~l~~a~g~~~La~elL~~fl~~~~~~~~~l~~ 51 (123)
T 3iqt_A 17 WQLALRQAAGKTDLARDMLQMLLDFLPEVRNKVEE 51 (123)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567778899999999999999999988888763
No 292
>1g2h_A Transcriptional regulatory protein TYRR homolog; protein structure, , DNA-binding domain, helix- turn-helix motif; NMR {Haemophilus influenzae} SCOP: a.4.1.12
Probab=24.20 E-value=29 Score=24.32 Aligned_cols=26 Identities=8% Similarity=0.212 Sum_probs=23.1
Q ss_pred CCHHHHHHHHHHHcCChHHHHHHHHhCCC
Q 017906 187 WDRETVIRALRAAYNNPERAVEYLYSGIP 215 (364)
Q Consensus 187 f~r~qv~~ALrAafnNpdRAvEyL~~GIP 215 (364)
|+|+-+..||+.+ +|..+|.+.| ||.
T Consensus 21 ~Er~~I~~aL~~~-gn~~~aA~~L--GIs 46 (61)
T 1g2h_A 21 YEAQVLKLFYAEY-PSTRKLAQRL--GVS 46 (61)
T ss_dssp HHHHHHHHHHHHS-CSHHHHHHHT--TSC
T ss_pred HHHHHHHHHHHHh-CCHHHHHHHh--CCC
Confidence 7899999999999 9999999987 664
No 293
>2jx5_A GLUB(S27A); ubiquitin, ribosome, recombination, evolution, ribosomal protein; NMR {Giardia lamblia atcc 50803}
Probab=23.92 E-value=2e+02 Score=20.40 Aligned_cols=51 Identities=25% Similarity=0.412 Sum_probs=38.8
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCCh
Q 017906 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTL 59 (364)
Q Consensus 1 MkI~VKtl~gk~~~ieV~~s~TV~dLK~kI~~~~g~~~ip~~~qkLif~GkiL~D~~tL 59 (364)
|-|.|| +..+.+.+++....-..+|...+... | -.+.|-..|++|....-|
T Consensus 1 mlvivr-lqdq~lpfelpaga~asqls~lls~~-g------m~fslhtqgrvlseaael 51 (69)
T 2jx5_A 1 MLVIVR-LQDQTLPFELPAGARASQLSNLLSSS-G------MAFSLHTQGRVLSEAAEL 51 (69)
T ss_dssp CEEEEE-ETTEEEEEECCTTCCHHHHHHHHHHS-S------CCCEEEETTEECCTTCCC
T ss_pred CeEEEE-eccccccccccccccHHHHHHHHhhc-C------ceEEEeecchhhhhHHhh
Confidence 667888 66779999999999999998877665 3 245677789999765444
No 294
>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A
Probab=23.79 E-value=59 Score=24.41 Aligned_cols=36 Identities=14% Similarity=0.068 Sum_probs=28.9
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHhCCCCCC-----CCCeEEEeCC
Q 017906 12 HFEIEVKPEDKVSDVKKNIETVQGSDVYP-----ASQQMLIHQG 50 (364)
Q Consensus 12 ~~~ieV~~s~TV~dLK~kI~~~~g~~~ip-----~~~qkLif~G 50 (364)
.+.|-|.++.+..+|..+|..+.+ .. ....+|-|+.
T Consensus 3 ~~~i~V~~~i~f~~L~~kI~~kl~---~~~~~~~~~~~~lkYkD 43 (77)
T 1pqs_A 3 IFTLLVEKVWNFDDLIMAINSKIS---NTHNNNISPITKIKYQD 43 (77)
T ss_dssp EEEEECTTCCCSHHHHHHHHHHTT---TTTSSCSCSTTCCEEEE
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHc---ccccccccceeEEEEEc
Confidence 678999999999999999999988 43 2556676654
No 295
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=23.76 E-value=1.5e+02 Score=23.53 Aligned_cols=43 Identities=19% Similarity=0.178 Sum_probs=34.6
Q ss_pred EEEEe-CCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCe
Q 017906 3 VFVKT-LKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGK 51 (364)
Q Consensus 3 I~VKt-l~gk~~~ieV~~s~TV~dLK~kI~~~~g~~~ip~~~qkLif~Gk 51 (364)
|.||. ..|.++.|.|...-+..+|..|+...+| ..+-|.|-..
T Consensus 9 vRiKfE~~GEkRIi~f~RPv~f~eL~~Kv~~~fG------q~ldL~y~n~ 52 (103)
T 2cu1_A 9 VRVKFEHRGEKRILQFPRPVKLEDLRSKAKIAFG------QSMDLHYTNN 52 (103)
T ss_dssp EEEEEEETTEEEEEEEESSCCHHHHHHHHHHHHS------SCEEEEECSS
T ss_pred EEEEEEecCeEEEEeccCCccHHHHHHHHHHHhC------CeeeEEEecc
Confidence 45553 3678999999999999999999999999 3666777654
No 296
>3tca_A Amyloid beta A4 precursor protein-binding family 1-interacting protein; RA domain, RBD, PH domain; 2.35A {Mus musculus}
Probab=22.45 E-value=1.5e+02 Score=26.45 Aligned_cols=34 Identities=18% Similarity=0.080 Sum_probs=28.5
Q ss_pred EEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCC
Q 017906 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGS 36 (364)
Q Consensus 3 I~VKtl~gk~~~ieV~~s~TV~dLK~kI~~~~g~ 36 (364)
|.|-..+|....|.|+++.|+.+|-+.|..+.++
T Consensus 37 v~v~~~d~~~k~i~v~~~~ta~ev~~~L~~k~~~ 70 (291)
T 3tca_A 37 VKVHMDDSSTKSLMVDERQLARDVLDNLFEKTHC 70 (291)
T ss_dssp EEEECTTSCEEEEEEETTCBHHHHHHHHHHHHCC
T ss_pred EEEEcCCCceEEEEeCCCCcHHHHHHHHHHHhCC
Confidence 4444567788899999999999999999999883
No 297
>1umq_A Photosynthetic apparatus regulatory protein; DNA-binding protein, response regulator, DNA binding domain, helix-turn-helix; NMR {Rhodobacter sphaeroides} SCOP: a.4.1.12
Probab=21.89 E-value=46 Score=25.11 Aligned_cols=27 Identities=15% Similarity=0.117 Sum_probs=23.4
Q ss_pred CCHHHHHHHHHHHcCChHHHHHHHHhCCC
Q 017906 187 WDRETVIRALRAAYNNPERAVEYLYSGIP 215 (364)
Q Consensus 187 f~r~qv~~ALrAafnNpdRAvEyL~~GIP 215 (364)
|+|+-+.+||+.+-+|..+|.+.| ||.
T Consensus 41 ~Er~~I~~aL~~~~GN~s~AA~~L--GIS 67 (81)
T 1umq_A 41 VRWEHIQRIYEMCDRNVSETARRL--NMH 67 (81)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHH--TSC
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHh--CCC
Confidence 788889999999999999999988 553
No 298
>1rm6_C 4-hydroxybenzoyl-COA reductase gamma subunit; xanthine oxidase family, dimer heterotrimers, oxidoreductase; HET: PCD FAD SF4 EPE; 1.60A {Thauera aromatica} SCOP: a.56.1.1 d.15.4.2 PDB: 1sb3_C*
Probab=21.79 E-value=55 Score=27.84 Aligned_cols=27 Identities=19% Similarity=0.086 Sum_probs=21.9
Q ss_pred EEEEeCCCcEEEEEeCCCCcHHHHHHHH
Q 017906 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNI 30 (364)
Q Consensus 3 I~VKtl~gk~~~ieV~~s~TV~dLK~kI 30 (364)
|+|+ ++|+.+.++++++.||.++-..+
T Consensus 5 i~~~-vNG~~~~v~~~~~~tLL~~Lr~~ 31 (161)
T 1rm6_C 5 LRLT-LNGRAREDLVPDNMLLLDYLRET 31 (161)
T ss_dssp EEEE-ETTEEEEEEEETTCBHHHHHHHT
T ss_pred EEEE-ECCEEEEEecCCcCcHHHHHHHc
Confidence 4554 79999999999999998877653
No 299
>3ix1_A N-formyl-4-amino-5-aminomethyl-2-methylpyrimidine protein; periplasmic N-formyl-4-amino-5-aminomethyl-2-methylpyrimidin protein; HET: NFM; 2.40A {Bacillus halodurans c-125}
Probab=21.56 E-value=93 Score=27.70 Aligned_cols=38 Identities=13% Similarity=0.205 Sum_probs=24.9
Q ss_pred HHHHhCccchHHHHHHHhhhCHHHHHHHHHCHHHHHHHhcCC
Q 017906 291 TMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP 332 (364)
Q Consensus 291 ~~vq~nP~~L~~~Lqql~~~nP~L~~~I~~n~e~Fl~~l~e~ 332 (364)
..+..||+++..++.-+.+. .+.+.+||++..+++.+.
T Consensus 198 ~~~~~~p~~v~~~~~a~~~a----~~~~~~~p~e~~~~~~~~ 235 (302)
T 3ix1_A 198 AYVEESGEVLAAFWRAALKG----YEWMVENPDEALNVLLTN 235 (302)
T ss_dssp HHHHHCHHHHHHHHHHHHHH----HHHHHHSHHHHHHHHHHT
T ss_pred HHHHHCHHHHHHHHHHHHHH----HHHHHhCHHHHHHHHHHh
Confidence 44556777777777776643 356667777777777543
No 300
>2zjr_Q 50S ribosomal protein L23; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.12.1.1 PDB: 1sm1_R* 2aar_R 2d3o_R 2zjp_Q* 2zjq_Q 1nkw_R 3cf5_Q* 3dll_Q* 3pio_Q* 3pip_Q* 1nwy_R* 1nwx_R* 1xbp_R* 1pnu_R 1pny_R 1vor_U 1vou_U 1vow_U 1voy_U 1vp0_U
Probab=21.56 E-value=93 Score=24.27 Aligned_cols=37 Identities=19% Similarity=0.240 Sum_probs=31.2
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEE-EeCCe
Q 017906 12 HFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQML-IHQGK 51 (364)
Q Consensus 12 ~~~ieV~~s~TV~dLK~kI~~~~g~~~ip~~~qkL-if~Gk 51 (364)
.+.|.|+...|=.++|+.|+..++ +.+....- ++.||
T Consensus 24 ~y~F~V~~~anK~eIK~aVE~lf~---VkV~~VNT~~~~gK 61 (95)
T 2zjr_Q 24 VYSFWVSPKATKTEIKDAIQQAFG---VRVIGISTMNVPGK 61 (95)
T ss_dssp CCEEEECSSCTHHHHHHHHHHHHC---CCCSEEEECCBCCC
T ss_pred EEEEEEcCCCCHHHHHHHHHHHhC---CCceEEEeEEeCCc
Confidence 389999999999999999999999 77777754 56665
No 301
>2lgx_A Fermitin family homolog 2; kindlin, membrane, integrin activation, cell adhesion; NMR {Homo sapiens}
Probab=21.24 E-value=48 Score=26.73 Aligned_cols=71 Identities=15% Similarity=0.120 Sum_probs=48.8
Q ss_pred EEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCC---eecCCCCChhhhccCCCCEEEEEE
Q 017906 2 KVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQG---KVLKDVTTLEENKVAENSFVVVML 74 (364)
Q Consensus 2 kI~VKtl~gk~~~ieV~~s~TV~dLK~kI~~~~g~~~ip~~~qkLif~G---kiL~D~~tL~d~gIk~~s~I~v~v 74 (364)
+|+|..++ ..+++.|..+.-|+-|-.+|-++.... -.-+.--|-+.- -.|+-..+|..|||..+..+++.-
T Consensus 28 ~V~V~d~~-~~~~lrV~GdlHIGGvmLkLVE~i~i~-~dWSDhaLWWp~k~~WLlkt~~tLDk~giqADa~L~ftp 101 (112)
T 2lgx_A 28 SVHVTDVN-RDVTLRVTGEVHIGGVMLKLVEKLDVK-KDWSDHALWWEKKRTWLLKTHWTLDKYGIQADAKLQFTP 101 (112)
T ss_dssp ECCBTTTT-BCCEECCCTTSCHHHHHHHHHHHCCSC-CCSSSSBEEETTTTEEECCTTSCHHHHTCCTTCBBCBBC
T ss_pred EEEEecCC-ccEEEEEeeccccccchhhhhhhhccc-ccchHhhhhhhhhchhhhcchhhHhhhceeccccceecC
Confidence 34444433 678889988899999999999886511 122233444333 356788999999999999887653
No 302
>2qho_B E3 ubiquitin-protein ligase EDD1; protein-protein complex, protein binding/ligase complex; 1.85A {Homo sapiens}
Probab=21.00 E-value=1.1e+02 Score=21.09 Aligned_cols=37 Identities=30% Similarity=0.308 Sum_probs=31.7
Q ss_pred HHHHHHHHH--cCCCCCCHHHHHHHHHHHcCChHHHHHHHHh
Q 017906 173 EATVQQILD--MGGGSWDRETVIRALRAAYNNPERAVEYLYS 212 (364)
Q Consensus 173 e~~V~~i~~--MG~~~f~r~qv~~ALrAafnNpdRAvEyL~~ 212 (364)
|..|.+... -| -+|+-++|-|+-..-|.+.||.-|++
T Consensus 10 e~li~q~q~VLqg---ksR~vIirELqrTnLdVN~AvNNlLs 48 (53)
T 2qho_B 10 EELISQAQVVLQG---KSRSVIIRELQRTNLDVNLAVNNLLS 48 (53)
T ss_dssp HHHHHHHHHHSTT---CCHHHHHHHHHHTTTCHHHHHHHHHC
T ss_pred HHHHHHHHHHhcC---CcHHHHHHHHHHhCccHHHHHHHHhc
Confidence 566666554 47 99999999999999999999999986
No 303
>3k6g_A Telomeric repeat-binding factor 2-interacting Pro; helix, chromosomal protein, nucleus, phosphoprotein, telomer cycle, DNA-binding, protein binding; 1.95A {Homo sapiens}
Probab=20.73 E-value=1.4e+02 Score=23.82 Aligned_cols=38 Identities=24% Similarity=0.337 Sum_probs=31.7
Q ss_pred HHHHHHH-HcCCCCCCHHHHHHHHHHHcCChHHHHHHHHhCC
Q 017906 174 ATVQQIL-DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGI 214 (364)
Q Consensus 174 ~~V~~i~-~MG~~~f~r~qv~~ALrAafnNpdRAvEyL~~GI 214 (364)
+.|.+|| +.. -+--.|..||-....+...|-.||++|+
T Consensus 15 ~~i~~lMeef~---~DL~sVTqAlLK~SGel~at~~fL~~~~ 53 (111)
T 3k6g_A 15 KIIRQLMEKFN---LDLSTVTQAFLKNSGELEATSAFLASGQ 53 (111)
T ss_dssp HHHHHHHHHTT---CCHHHHHHHHHHTTTCHHHHHHHHHHSS
T ss_pred HHHHHHHHHHh---hhHHHHHHHHHHccccHHHHHHHHhCCC
Confidence 3444554 467 7999999999999999999999999984
No 304
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=20.37 E-value=1.9e+02 Score=20.36 Aligned_cols=44 Identities=20% Similarity=0.255 Sum_probs=34.8
Q ss_pred chHHHHHHHHHc-CCCCCCHHHHHHHHHHHcCChHHHHHHHH----hC-CCCC
Q 017906 171 NLEATVQQILDM-GGGSWDRETVIRALRAAYNNPERAVEYLY----SG-IPEQ 217 (364)
Q Consensus 171 ~~e~~V~~i~~M-G~~~f~r~qv~~ALrAafnNpdRAvEyL~----~G-IP~~ 217 (364)
+.+++|..+... | -..+=+...|.-.-.|.+||+.-.. .| ||++
T Consensus 6 ~q~~mv~~~s~~Tg---mn~~~s~~cL~~~~Wd~~~A~~~F~~l~~~~~IP~e 55 (59)
T 1oai_A 6 EQQEMLQAFSTQSG---MNLEWSQKCLQDNNWDYTRSAQAFTHLKAKGEIPEV 55 (59)
T ss_dssp HHHHHHHHHHHHHC---CCHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCSCGG
T ss_pred HHHHHHHHHHHHHC---CCHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCHH
Confidence 457788888876 6 7788889999999999999996532 25 8864
No 305
>2jrh_A Mitogen-activated protein kinase kinase kinase 3; kinase signaling domain, transferase; NMR {Homo sapiens} PDB: 2pph_A
Probab=20.18 E-value=2.2e+02 Score=22.14 Aligned_cols=44 Identities=25% Similarity=0.180 Sum_probs=34.6
Q ss_pred EEEEe-CCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCee
Q 017906 3 VFVKT-LKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKV 52 (364)
Q Consensus 3 I~VKt-l~gk~~~ieV~~s~TV~dLK~kI~~~~g~~~ip~~~qkLif~Gki 52 (364)
|.||. ..|.++.|.+..--...+|..++...+| ..+-|.|-...
T Consensus 5 vRIKfE~~gEKRIi~f~RPvkf~dl~qkv~~afG------q~ldl~y~nnE 49 (94)
T 2jrh_A 5 VRIKFEHNGERRIIAFSRPVKYEDVEHKVTTVFG------QPLDLHYMNNE 49 (94)
T ss_dssp EEEEEEETTEEEEEEECSSCCHHHHHHHHHHHHC------SSEEEEEECSS
T ss_pred eEEEEEecCceEEEecCCCccHHHHHHHHHHHhC------CeeeeEEecce
Confidence 34442 4688999999999999999999999999 46677775543
No 306
>2nxo_A Hypothetical protein SCO4506; PFAM, DUF178, NYSGXRC, 10093F, PSI-2, structural genomics, protein structure initiative; 2.04A {Streptomyces coelicolor} SCOP: c.94.1.1
Probab=20.00 E-value=1e+02 Score=27.70 Aligned_cols=40 Identities=13% Similarity=0.063 Sum_probs=31.3
Q ss_pred HHHHHhCccchHHHHHHHhhhCHHHHHHHHHCHHHHHHHhcCCC
Q 017906 290 RTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPV 333 (364)
Q Consensus 290 R~~vq~nP~~L~~~Lqql~~~nP~L~~~I~~n~e~Fl~~l~e~~ 333 (364)
|..++.||+++..++..+.+. .+.+.+||++...++....
T Consensus 194 ~~~~~~~p~~v~~~~~a~~~a----~~~~~~~p~ea~~~~a~~~ 233 (291)
T 2nxo_A 194 RDYAEREPVITRKVHEAFLAS----RNLSLEEVEKVAEQAARWE 233 (291)
T ss_dssp HHHHHHCHHHHHHHHHHHHHH----HHHHHHTHHHHHHHHHTTS
T ss_pred hhhhhhCHHHHHHHHHHHHHH----HHHHHHCHHHHHHHHHHHc
Confidence 567788999888888888754 5778888888888886643
Done!