BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017907
(364 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
pdb|3O47|B Chain B, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
Length = 329
Score = 140 bits (353), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 60/115 (52%), Positives = 86/115 (74%), Gaps = 1/115 (0%)
Query: 7 LRDLQSQPGNKICVDCAQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTMDSWSE 66
L++++ Q N +C +C NPQW SV+YG+++CLECSG+HRGLGVH+SFVRSVTMD W +
Sbjct: 28 LKEVRVQDENNVCFECGAFNPQWVSVTYGIWICLECSGRHRGLGVHLSFVRSVTMDKWKD 87
Query: 67 IQIKKMEAGGNERLNTFL-SQYGIPKETDIVTKYNTNAASIYRDRIQAIAEGRPW 120
I+++KM+AGGN + FL SQ + KYN+ AA+++RD++ A+AEGR W
Sbjct: 88 IELEKMKAGGNAKFREFLESQEDYDPCWSLQEKYNSRAAALFRDKVVALAEGREW 142
>pdb|3DWD|A Chain A, Crystal Structure Of The Arfgap Domain Of Human Arfgap1
pdb|3DWD|B Chain B, Crystal Structure Of The Arfgap Domain Of Human Arfgap1
Length = 147
Score = 140 bits (352), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 60/115 (52%), Positives = 86/115 (74%), Gaps = 1/115 (0%)
Query: 7 LRDLQSQPGNKICVDCAQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTMDSWSE 66
L++++ Q N +C +C NPQW SV+YG+++CLECSG+HRGLGVH+SFVRSVTMD W +
Sbjct: 29 LKEVRVQDENNVCFECGAFNPQWVSVTYGIWICLECSGRHRGLGVHLSFVRSVTMDKWKD 88
Query: 67 IQIKKMEAGGNERLNTFL-SQYGIPKETDIVTKYNTNAASIYRDRIQAIAEGRPW 120
I+++KM+AGGN + FL SQ + KYN+ AA+++RD++ A+AEGR W
Sbjct: 89 IELEKMKAGGNAKFREFLESQEDYDPCWSLQEKYNSRAAALFRDKVVALAEGREW 143
>pdb|2CRW|A Chain A, Solution Structure Of The Arfgap Domain Of
Adp-Ribosylation Factor Gtpaseactivating Protein 3
(Arfgap 3)
Length = 149
Score = 127 bits (318), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 54/110 (49%), Positives = 78/110 (70%), Gaps = 2/110 (1%)
Query: 7 LRDLQSQPGNKICVDCAQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTMDS-WS 65
+ L+S P NK+C DC KNP WAS++YGVF+C++CSG HR LGVH+SF+RS +DS WS
Sbjct: 20 FKRLRSVPTNKVCFDCGAKNPSWASITYGVFLCIDCSGSHRSLGVHLSFIRSTELDSNWS 79
Query: 66 EIQIKKMEAGGNERLNTFLSQYGIPKETDIVTKYNTNAASIYRDRIQAIA 115
Q++ M+ GGN ++F Q+G D KYN+ AA +YR++I+++A
Sbjct: 80 WFQLRCMQVGGNASASSFFHQHGC-STNDTNAKYNSRAAQLYREKIKSLA 128
>pdb|2P57|A Chain A, Gap Domain Of Znf289, An Id1-Regulated Zinc Finger Protein
Length = 144
Score = 120 bits (301), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 52/109 (47%), Positives = 74/109 (67%), Gaps = 2/109 (1%)
Query: 7 LRDLQSQPGNKICVDCAQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTMDS-WS 65
+ L++ P NK C DC KNP WAS++YGVF+C++CSG HR LGVH+SF+RS +DS W+
Sbjct: 28 FKRLRAVPTNKACFDCGAKNPSWASITYGVFLCIDCSGVHRSLGVHLSFIRSTELDSNWN 87
Query: 66 EIQIKKMEAGGNERLNTFLSQYGIPKETDIVTKYNTNAASIYRDRIQAI 114
Q++ M+ GGN F Q+G D TKYN+ AA +YR++I+ +
Sbjct: 88 WFQLRCMQVGGNANATAFFRQHGC-TANDANTKYNSRAAQMYREKIRQL 135
>pdb|3SUB|A Chain A, Crystal Structure Of The Catalytic Domain Of Plasmodium
Falciparum Arf Gtpase Activating Protein
pdb|3SUB|B Chain B, Crystal Structure Of The Catalytic Domain Of Plasmodium
Falciparum Arf Gtpase Activating Protein
Length = 163
Score = 107 bits (266), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 57/137 (41%), Positives = 81/137 (59%), Gaps = 10/137 (7%)
Query: 2 AATRRLRDLQSQ-PGNKICVDCAQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVT 60
AA + L+ + N C DC NP W SV++G+F+C+ CSG HR LGVHIS VRS+
Sbjct: 7 AAVEFINRLKKEDESNNKCFDCGISNPDWVSVNHGIFLCINCSGVHRSLGVHISIVRSIK 66
Query: 61 MDSWSEIQIKKMEAGGNERLNTFLSQYGIPKETDIVT--KYNTNAASIYRDRIQAIAEGR 118
MD +++ Q+K ++ GGN++ T+L YGI +D + KY T AA YR +++I
Sbjct: 67 MDIFTDEQLKYIDKGGNKKCQTYLENYGI---SDFIPERKYRTKAADHYRKILRSIVHN- 122
Query: 119 PWRDPPVVKETLNAGKS 135
DPP L+ GKS
Sbjct: 123 --VDPP-APLPLDEGKS 136
>pdb|2OWA|A Chain A, Crystal Structure Of Putative Gtpase Activating Protein
For Adp Ribosylation Factor From Cryptosporidium Parvum
(Cgd5_1040)
pdb|2OWA|B Chain B, Crystal Structure Of Putative Gtpase Activating Protein
For Adp Ribosylation Factor From Cryptosporidium Parvum
(Cgd5_1040)
Length = 138
Score = 94.4 bits (233), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 39/86 (45%), Positives = 57/86 (66%), Gaps = 5/86 (5%)
Query: 6 RLRD-----LQSQPGNKICVDCAQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVT 60
+LRD ++++P N+ C DC +NP W S+S+ VF+CL CS HR +GVHISFVRS
Sbjct: 21 KLRDNFFQIVRNRPENRTCFDCESRNPTWLSLSFAVFICLNCSSDHRKMGVHISFVRSSD 80
Query: 61 MDSWSEIQIKKMEAGGNERLNTFLSQ 86
+D ++ IQ+ +M+ GGN R + Q
Sbjct: 81 LDKFTPIQLVRMDIGGNGRARNYFKQ 106
>pdb|2IQJ|A Chain A, Crystal Structure Of The Gap Domain Of Smap1l (Loc64744)
Stromal Membrane-Associated Protein 1-Like
pdb|2IQJ|B Chain B, Crystal Structure Of The Gap Domain Of Smap1l (Loc64744)
Stromal Membrane-Associated Protein 1-Like
Length = 134
Score = 85.9 bits (211), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 38/81 (46%), Positives = 52/81 (64%)
Query: 7 LRDLQSQPGNKICVDCAQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTMDSWSE 66
L +L + NK C DC K P+WAS + GVF+C+ C+G HR LGVHIS V+SV +D W++
Sbjct: 18 LANLLLEEDNKFCADCQSKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQWTQ 77
Query: 67 IQIKKMEAGGNERLNTFLSQY 87
QI+ M+ GN + N Y
Sbjct: 78 EQIQCMQEMGNGKANRLYEAY 98
>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
pdb|4F1P|B Chain B, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
Length = 368
Score = 82.8 bits (203), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 42/110 (38%), Positives = 58/110 (52%), Gaps = 23/110 (20%)
Query: 10 LQSQPGNKICVDCAQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTMDSWSEIQI 69
+QS GN C DC + P+WAS++ GV +C++CSG HR LGVH S VRS+T+DSW +
Sbjct: 39 VQSVDGNAQCCDCREPAPEWASINLGVTLCIQCSGIHRSLGVHFSKVRSLTLDSWEPELV 98
Query: 70 KKMEAGGNERLNTFLSQYGIPKETDIVTKYNTNAASIYRDRIQAIAEGRP 119
K M GN +N IY R++A+A +P
Sbjct: 99 KLMCELGNVIIN-----------------------QIYEARVEAMAVKKP 125
>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
pdb|3T9K|B Chain B, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
Length = 390
Score = 82.8 bits (203), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 42/110 (38%), Positives = 58/110 (52%), Gaps = 23/110 (20%)
Query: 10 LQSQPGNKICVDCAQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTMDSWSEIQI 69
+QS GN C DC + P+WAS++ GV +C++CSG HR LGVH S VRS+T+DSW +
Sbjct: 39 VQSVDGNAQCCDCREPAPEWASINLGVTLCIQCSGIHRSLGVHFSKVRSLTLDSWEPELV 98
Query: 70 KKMEAGGNERLNTFLSQYGIPKETDIVTKYNTNAASIYRDRIQAIAEGRP 119
K M GN +N IY R++A+A +P
Sbjct: 99 KLMCELGNVIIN-----------------------QIYEARVEAMAVKKP 125
>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
pdb|3JUE|B Chain B, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
Length = 368
Score = 82.8 bits (203), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 42/110 (38%), Positives = 58/110 (52%), Gaps = 23/110 (20%)
Query: 10 LQSQPGNKICVDCAQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTMDSWSEIQI 69
+QS GN C DC + P+WAS++ GV +C++CSG HR LGVH S VRS+T+DSW +
Sbjct: 39 VQSVDGNAQCCDCREPAPEWASINLGVTLCIQCSGIHRSLGVHFSKVRSLTLDSWEPELV 98
Query: 70 KKMEAGGNERLNTFLSQYGIPKETDIVTKYNTNAASIYRDRIQAIAEGRP 119
K M GN +N IY R++A+A +P
Sbjct: 99 KLMCELGNVIIN-----------------------QIYEARVEAMAVKKP 125
>pdb|2CRR|A Chain A, Solution Structure Of Arfgap Domain From Human Smap1
Length = 141
Score = 81.3 bits (199), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 38/85 (44%), Positives = 53/85 (62%), Gaps = 1/85 (1%)
Query: 7 LRDLQSQPGNKICVDCAQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTMDSWSE 66
L L + NK C DC K P+WAS + GVF+C+ C+G HR LGVHIS V+SV +D W+
Sbjct: 20 LSKLLREEDNKYCADCEAKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQWTA 79
Query: 67 IQIKKMEAGGNERLNTFLSQYGIPK 91
QI+ M+ GN + L + +P+
Sbjct: 80 EQIQCMQDMGNTKAR-LLYEANLPE 103
>pdb|3FM8|C Chain C, Crystal Structure Of Full Length Centaurin Alpha-1 Bound
With The Fha Domain Of Kif13b (Capri Target)
pdb|3FM8|D Chain D, Crystal Structure Of Full Length Centaurin Alpha-1 Bound
With The Fha Domain Of Kif13b (Capri Target)
pdb|3MDB|C Chain C, Crystal Structure Of The Ternary Complex Of Full Length
Centaurin Alpha-1, Kif13b Fha Domain, And Ip4
pdb|3MDB|D Chain D, Crystal Structure Of The Ternary Complex Of Full Length
Centaurin Alpha-1, Kif13b Fha Domain, And Ip4
Length = 392
Score = 78.2 bits (191), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 51/80 (63%), Gaps = 3/80 (3%)
Query: 1 MAATRR--LRDLQSQPGNKICVDCAQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRS 58
MA RR + +L +PGN C DC +P WAS + GVF+CL CSG HR + +S V+S
Sbjct: 19 MAKERRRAVLELLQRPGNARCADCGAPDPDWASYTLGVFICLSCSGIHRNIP-QVSKVKS 77
Query: 59 VTMDSWSEIQIKKMEAGGNE 78
V +D+W E Q++ M + GN+
Sbjct: 78 VRLDAWEEAQVEFMASHGND 97
>pdb|3FEH|A Chain A, Crystal Structure Of Full Length Centaurin Alpha-1
pdb|3LJU|X Chain X, Crystal Structure Of Full Length Centaurin Alpha-1 Bound
With The Head Group Of Pip3
Length = 386
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 48/74 (64%), Gaps = 1/74 (1%)
Query: 5 RRLRDLQSQPGNKICVDCAQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTMDSW 64
R + +L +PGN C DC +P WAS + GVF+CL CSG HR + +S V+SV +D+W
Sbjct: 23 RAVLELLQRPGNARCADCGAPDPDWASYTLGVFICLSCSGIHRNIP-QVSKVKSVRLDAW 81
Query: 65 SEIQIKKMEAGGNE 78
E Q++ M + GN+
Sbjct: 82 EEAQVEFMASHGND 95
>pdb|2B0O|E Chain E, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|F Chain F, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|G Chain G, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|H Chain H, Crystal Structure Of Uplc1 Gap Domain
Length = 301
Score = 68.6 bits (166), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 59/122 (48%), Gaps = 7/122 (5%)
Query: 7 LRDLQSQPGNKICVDCAQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTMDSWSE 66
+ +++S+PGN C DC +P W S + GV C++CSG HR LGV S ++S+T+D
Sbjct: 33 IAEVKSRPGNSQCCDCGAADPTWLSTNLGVLTCIQCSGVHRELGVRFSRMQSLTLDLLGP 92
Query: 67 IQIKKMEAGGNERLNTF----LSQYGIPK---ETDIVTKYNTNAASIYRDRIQAIAEGRP 119
++ GN N L +G PK E+D+ T+ + A R P
Sbjct: 93 SELLLALNMGNTSFNEVMEAQLPSHGGPKPSAESDMGTRRDYIMAKYVEHRFARRCTPEP 152
Query: 120 WR 121
R
Sbjct: 153 QR 154
>pdb|1DCQ|A Chain A, Crystal Structure Of The Arf-Gap Domain And Ankyrin
Repeats Of Papbeta
Length = 278
Score = 68.2 bits (165), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 48/82 (58%), Gaps = 4/82 (4%)
Query: 7 LRDLQSQPGNKICVDCAQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTMDSW-- 64
+ ++Q GN +C DC +P W S + G+ C+ECSG HR LGVH S ++S+T+D
Sbjct: 8 ISEVQRMTGNDVCCDCGAPDPTWLSTNLGILTCIECSGIHRELGVHYSRMQSLTLDVLGT 67
Query: 65 SEIQIKKM--EAGGNERLNTFL 84
SE+ + K AG NE + L
Sbjct: 68 SELLLAKNIGNAGFNEIMECCL 89
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 68.2 bits (165), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 59/122 (48%), Gaps = 7/122 (5%)
Query: 7 LRDLQSQPGNKICVDCAQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTMDSWSE 66
+ +++S+PGN C DC +P W S + GV C++CSG HR LGV S ++S+T+D
Sbjct: 14 IAEVKSRPGNSQCCDCGAADPTWLSTNLGVLTCIQCSGVHRELGVRFSRMQSLTLDLLGP 73
Query: 67 IQIKKMEAGGNERLNTF----LSQYGIPK---ETDIVTKYNTNAASIYRDRIQAIAEGRP 119
++ GN N L +G PK E+D+ T+ + A R P
Sbjct: 74 SELLLALNMGNTSFNEVMEAQLPSHGGPKPSAESDMGTRRDYIMAKYVEHRFARRCTPEP 133
Query: 120 WR 121
R
Sbjct: 134 QR 135
>pdb|2D9L|A Chain A, Solution Structure Of The Arfgap Domain Of Human Rip
Length = 134
Score = 61.2 bits (147), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 65/142 (45%), Gaps = 26/142 (18%)
Query: 2 AATRRLRDLQSQPGNKICVDCAQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTM 61
+ + LRD+ P N+ C DC Q+ P + +++ G F+C CSG RGL V+S++M
Sbjct: 6 SGLKMLRDMTGLPHNRKCFDCDQRGPTYVNMTVGSFVCTSCSGSLRGLNPPHR-VKSISM 64
Query: 62 DSWSEIQIKKMEAGGNERLNTFLSQYGIPKETDIVTKYNTNAASIYRDRIQAIAEGRPWR 121
++++ +I+ ++ GNE ++ DR AI + +R
Sbjct: 65 TTFTQQEIEFLQKHGNEVCKQIW-------------------LGLFDDRSSAIPD---FR 102
Query: 122 DPPVVKETLNAGKSSSR---PP 140
DP VKE L R PP
Sbjct: 103 DPQKVKEFLQEKYEKKRWYVPP 124
>pdb|2OLM|A Chain A, Arfgap Domain Of Hiv-1 Rev Binding Protein
Length = 140
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 64/139 (46%), Gaps = 26/139 (18%)
Query: 5 RRLRDLQSQPGNKICVDCAQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTMDSW 64
+ LRD+ P N+ C DC Q+ P + +++ G F+C CSG RGL V+S++M ++
Sbjct: 14 KMLRDMTGLPHNRKCFDCDQRGPTYVNMTVGSFVCTSCSGSLRGLNPPHR-VKSISMTTF 72
Query: 65 SEIQIKKMEAGGNERLNTFLSQYGIPKETDIVTKYNTNAASIYRDRIQAIAEGRPWRDPP 124
++ +I+ ++ GNE ++ DR AI + +RDP
Sbjct: 73 TQQEIEFLQKHGNEVCKQIW-------------------LGLFDDRSSAIPD---FRDPQ 110
Query: 125 VVKETLNAGKSSSR---PP 140
VKE L R PP
Sbjct: 111 KVKEFLQEKYEKKRWYVPP 129
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.312 0.129 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,805,327
Number of Sequences: 62578
Number of extensions: 355860
Number of successful extensions: 556
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 530
Number of HSP's gapped (non-prelim): 18
length of query: 364
length of database: 14,973,337
effective HSP length: 100
effective length of query: 264
effective length of database: 8,715,537
effective search space: 2300901768
effective search space used: 2300901768
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 52 (24.6 bits)