Query 017907
Match_columns 364
No_of_seqs 197 out of 1154
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 06:50:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017907.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017907hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dwd_A ADP-ribosylation factor 100.0 3.3E-42 1.1E-46 303.0 10.6 120 3-122 25-145 (147)
2 3sub_A ADP-ribosylation factor 100.0 1.2E-39 4E-44 290.6 11.1 127 2-129 7-134 (163)
3 2owa_A Arfgap-like finger doma 100.0 2.3E-39 7.7E-44 282.8 9.8 113 4-116 24-137 (138)
4 2crw_A ARF GAP 3, ADP-ribosyla 100.0 4.2E-39 1.4E-43 284.2 9.9 113 3-116 16-129 (149)
5 2p57_A GTPase-activating prote 100.0 1.5E-38 5.3E-43 279.1 9.4 114 3-117 24-138 (144)
6 2olm_A Nucleoporin-like protei 100.0 1.3E-35 4.3E-40 259.6 11.1 120 3-126 12-131 (140)
7 2iqj_A Stromal membrane-associ 100.0 1.3E-35 4.5E-40 257.8 9.8 115 4-124 15-129 (134)
8 2crr_A Stromal membrane-associ 100.0 2.1E-35 7.1E-40 258.5 9.8 117 3-125 16-132 (141)
9 3o47_A ADP-ribosylation factor 100.0 3.6E-33 1.2E-37 268.7 11.5 122 3-124 24-146 (329)
10 3jue_A Arfgap with coiled-coil 100.0 1.8E-30 6.2E-35 254.5 10.9 119 4-124 33-151 (368)
11 3lju_X ARF-GAP with dual PH do 100.0 3E-30 1E-34 255.8 11.0 119 3-125 21-139 (386)
12 2b0o_E UPLC1; arfgap, structur 99.9 9E-28 3.1E-32 226.8 12.0 119 3-123 29-147 (301)
13 1dcq_A PYK2-associated protein 99.9 9.4E-28 3.2E-32 224.0 10.3 119 3-123 4-122 (278)
14 3lvq_E ARF-GAP with SH3 domain 99.9 1.5E-27 5.3E-32 238.4 9.7 120 3-124 10-129 (497)
15 1u5k_A Hypothetical protein; O 82.9 0.65 2.2E-05 42.3 2.9 48 11-74 145-192 (244)
16 1gnf_A Transcription factor GA 82.7 0.79 2.7E-05 32.7 2.6 39 14-52 2-41 (46)
17 2vut_I AREA, nitrogen regulato 82.3 0.85 2.9E-05 32.1 2.6 35 17-51 2-37 (43)
18 3dfx_A Trans-acting T-cell-spe 78.3 1.1 3.6E-05 34.1 2.2 39 13-51 4-43 (63)
19 4gat_A Nitrogen regulatory pro 77.1 1.8 6.1E-05 33.1 3.2 38 14-51 7-45 (66)
20 1ffk_W Ribosomal protein L37AE 71.0 3.1 0.00011 32.4 3.2 40 3-44 13-53 (73)
21 2kae_A GATA-type transcription 65.1 1.6 5.4E-05 33.9 0.4 38 14-52 6-46 (71)
22 4hc9_A Trans-acting T-cell-spe 63.3 3.9 0.00013 34.1 2.6 37 16-52 5-42 (115)
23 3k7a_M Transcription initiatio 52.7 5.2 0.00018 38.6 1.8 47 1-47 1-53 (345)
24 1vq8_Z 50S ribosomal protein L 50.7 5.9 0.0002 31.4 1.5 41 3-45 13-54 (83)
25 1xq8_A Alpha-synuclein; micell 49.6 11 0.00036 32.7 3.0 79 166-248 1-86 (140)
26 4hc9_A Trans-acting T-cell-spe 49.4 13 0.00045 30.9 3.5 39 14-52 57-96 (115)
27 1tjl_A DNAK suppressor protein 49.2 5.4 0.00019 34.7 1.2 34 14-47 109-143 (151)
28 2kgo_A Uncharacterized protein 46.5 2.4 8.4E-05 35.3 -1.4 33 15-47 55-88 (108)
29 3cc2_Z 50S ribosomal protein L 46.5 5 0.00017 33.9 0.5 40 3-44 46-86 (116)
30 3g9m_A Glucocorticoid receptor 45.8 12 0.0004 29.7 2.5 30 15-47 1-30 (90)
31 1hcq_A Protein (estrogen recep 45.6 13 0.00046 29.1 2.8 31 14-47 2-32 (84)
32 2a66_A Orphan nuclear receptor 42.6 11 0.00039 31.3 2.1 34 11-47 4-37 (113)
33 1r4i_A Androgen receptor; AR, 42.2 13 0.00044 30.5 2.3 32 13-47 4-35 (105)
34 2han_B Ecdysone receptor; tran 39.9 18 0.00062 30.2 2.9 30 15-47 7-36 (119)
35 2ebl_A COUP transcription fact 39.9 14 0.00047 29.4 2.1 32 13-47 4-35 (89)
36 1d4u_A Nucleotide excision rep 39.7 7.1 0.00024 32.6 0.4 32 15-46 4-36 (111)
37 3j21_i 50S ribosomal protein L 37.7 21 0.00073 28.3 2.9 40 3-44 21-61 (83)
38 2han_A Protein ultraspiracle; 37.3 19 0.00064 28.8 2.5 30 15-47 9-38 (93)
39 2nll_B Protein (thyroid hormon 35.4 15 0.00051 29.9 1.7 28 17-47 2-29 (103)
40 1cit_A NGFI-B, protein (orphan 33.4 26 0.0009 27.7 2.8 27 18-47 2-28 (89)
41 3izc_m 60S ribosomal protein R 33.2 25 0.00086 28.5 2.6 39 3-43 22-61 (92)
42 1dl6_A Transcription factor II 32.9 25 0.00084 25.7 2.3 28 17-45 12-39 (58)
43 1a6y_A Orphan nuclear receptor 31.9 22 0.00076 28.4 2.1 30 15-47 6-35 (94)
44 1dsz_A RAR-alpha, retinoic aci 30.4 21 0.00072 28.1 1.7 28 17-47 5-32 (86)
45 1ynw_B Retinoic acid receptor 29.8 19 0.00066 29.1 1.4 30 16-48 3-32 (99)
46 3dzy_D Peroxisome proliferator 29.5 24 0.00081 34.8 2.3 30 15-47 49-78 (419)
47 3iz5_m 60S ribosomal protein L 29.2 26 0.0009 28.3 2.1 39 3-43 22-61 (92)
48 1kb2_A Vitamin D3 receptor; VD 29.1 21 0.00071 29.5 1.5 30 15-47 5-34 (110)
49 1lo1_A Steroid hormone recepto 28.8 17 0.00058 29.4 0.9 29 16-47 4-32 (98)
50 4bbr_M Transcription initiatio 28.6 27 0.00092 33.7 2.5 28 18-45 23-51 (345)
51 3j21_g 50S ribosomal protein L 28.2 12 0.00042 27.1 0.0 25 15-45 13-37 (51)
52 2uzg_A Ubiquitin carboxyl-term 27.9 24 0.00082 28.2 1.7 28 14-41 23-53 (97)
53 3iz6_N 40S ribosomal protein S 26.9 33 0.0011 25.3 2.1 39 14-57 16-54 (56)
54 3jyw_9 60S ribosomal protein L 26.2 16 0.00054 28.4 0.3 38 4-43 13-51 (72)
55 4hn5_A Glucocorticoid receptor 26.2 34 0.0012 28.5 2.4 33 12-47 25-57 (117)
56 1dsz_B RXR-alpha, retinoic aci 25.4 18 0.00063 28.4 0.5 31 15-48 4-34 (85)
57 3cbb_A HNF-4-alpha, hepatocyte 22.7 31 0.0011 26.6 1.4 27 18-47 2-28 (78)
58 4a17_Y RPL37A, 60S ribosomal p 21.9 23 0.00077 29.3 0.4 40 3-44 22-62 (103)
59 3dzy_A Retinoic acid receptor 20.6 25 0.00087 35.3 0.6 30 15-47 136-165 (467)
60 3j21_d 50S ribosomal protein L 20.5 31 0.001 27.7 0.9 30 14-44 31-77 (89)
61 3k1f_M Transcription initiatio 20.5 56 0.0019 29.7 2.7 28 18-45 23-51 (197)
No 1
>3dwd_A ADP-ribosylation factor GTPase-activating protein; GAP, structural genomics consorti ER-golgi transport, golgi apparatus, GTPase activation; 2.40A {Homo sapiens}
Probab=100.00 E-value=3.3e-42 Score=302.96 Aligned_cols=120 Identities=48% Similarity=0.994 Sum_probs=107.5
Q ss_pred HHHHHHHHhcCCCCCCccCCCCCCCCceEeccceeeehhhhhhhccCCCcccceeecccCCCCHHHHHHhhccChHHHHH
Q 017907 3 ATRRLRDLQSQPGNKICVDCAQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTMDSWSEIQIKKMEAGGNERLNT 82 (364)
Q Consensus 3 a~r~LreL~~~p~Nk~CaDCGa~nP~WaSvn~GIFIC~~CSGiHR~LG~hiS~VKSvtmD~Ws~~eL~~Mk~gGN~~an~ 82 (364)
.+++|++|++.|+|++||||++++|+|||++||||||++|+||||.||+|||+||||+||.|+++||++|+.+||.++|+
T Consensus 25 ~~~~l~~L~~~p~N~~CaDCga~~P~WaS~nlGvfiC~~CSgiHR~LG~hISkVkSl~LD~W~~~el~~m~~~GN~~an~ 104 (147)
T 3dwd_A 25 TRKVLKEVRVQDENNVCFECGAFNPQWVSVTYGIWICLECSGRHRGLGVHLSFVRSVTMDKWKDIELEKMKAGGNAKFRE 104 (147)
T ss_dssp HHHHHHHHHTSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEESCC--CCHHHHHHHHHCCHHHHHH
T ss_pred HHHHHHHHHcCcCCCccCCCCCCCCCeEEecccEeEhHhhChHHhcCCCCCCccccccccCCCHHHHHHHHHHhhHHHHH
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcC-CCCCCCccccccchhHHHHHHHHHHHHcCCCCCC
Q 017907 83 FLSQYG-IPKETDIVTKYNTNAASIYRDRIQAIAEGRPWRD 122 (364)
Q Consensus 83 f~e~~~-~~~e~~I~~KY~s~aa~~yreki~a~~egr~w~~ 122 (364)
||++++ .....+|++||++++|.+||++|++++|||+|+.
T Consensus 105 ~~ea~~~~~~~~~~~~KY~s~aA~~Yr~~l~~~~eg~~w~~ 145 (147)
T 3dwd_A 105 FLESQEDYDPCWSLQEKYNSRAAALFRDKVVALAEGREWSL 145 (147)
T ss_dssp HHHTSTTCCTTCCHHHHHTSHHHHHHHHHHHHHHC------
T ss_pred HHHhCCCCCCCCCHHHhhCCHHHHHHHHHHHHHHcCCcCCC
Confidence 999874 3456789999999999999999999999999975
No 2
>3sub_A ADP-ribosylation factor GTPase-activating protein; protein trafficking, hydrolase AC; 2.40A {Plasmodium falciparum 3D7}
Probab=100.00 E-value=1.2e-39 Score=290.63 Aligned_cols=127 Identities=40% Similarity=0.735 Sum_probs=115.6
Q ss_pred hHHHHHHHHhcC-CCCCCccCCCCCCCCceEeccceeeehhhhhhhccCCCcccceeecccCCCCHHHHHHhhccChHHH
Q 017907 2 AATRRLRDLQSQ-PGNKICVDCAQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTMDSWSEIQIKKMEAGGNERL 80 (364)
Q Consensus 2 aa~r~LreL~~~-p~Nk~CaDCGa~nP~WaSvn~GIFIC~~CSGiHR~LG~hiS~VKSvtmD~Ws~~eL~~Mk~gGN~~a 80 (364)
++.++|++|++. |+|++||||++++|+|||++||||||++|+|+||.||+|||+||||+||.|+++||++|+.+||.++
T Consensus 7 ~a~~~l~~L~~~~p~N~~CaDCga~~P~WaS~nlGvflCi~CSGiHR~LG~hISkVKSltLD~Wt~e~l~~m~~~GN~~a 86 (163)
T 3sub_A 7 AAVEFINRLKKEDESNNKCFDCGISNPDWVSVNHGIFLCINCSGVHRSLGVHISIVRSIKMDIFTDEQLKYIDKGGNKKC 86 (163)
T ss_dssp HHHHHHHHHHHHSGGGGBCTTTCCBSCCEEETTTTEEECHHHHHHHHHTCTTTCCEEETTTCCCCHHHHHHHHHCCHHHH
T ss_pred HHHHHHHHHHhCCCCCCccccCCCCCCCeEEecCCeeEHHhhhHHhcCCCCCCCeeeeccccCcCHHHHHHHHhhCHHHH
Confidence 378999999875 8999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCCCCCccccccchhHHHHHHHHHHHHcCCCCCCCCcchhc
Q 017907 81 NTFLSQYGIPKETDIVTKYNTNAASIYRDRIQAIAEGRPWRDPPVVKET 129 (364)
Q Consensus 81 n~f~e~~~~~~e~~I~~KY~s~aa~~yreki~a~~egr~w~~pp~~kE~ 129 (364)
|+||+++++.. ..+..||.+++|.+||++|+++++|++...|+++.|.
T Consensus 87 n~~~e~~g~~~-~~p~~KY~s~aA~~Yr~~L~~~v~~~~~p~~~~~~~~ 134 (163)
T 3sub_A 87 QTYLENYGISD-FIPERKYRTKAADHYRKILRSIVHNVDPPAPLPLDEG 134 (163)
T ss_dssp HHHHHHTTCTT-SCHHHHTTBHHHHHHHHHHHHHHTTCCCCCCCCGGGT
T ss_pred HHHHHHcCCcc-cChhhcCCCHHHHHHHHHHHHHHcCCCCCCCCccccc
Confidence 99999988764 3456899999999999999999999876555555444
No 3
>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II}
Probab=100.00 E-value=2.3e-39 Score=282.78 Aligned_cols=113 Identities=34% Similarity=0.722 Sum_probs=107.1
Q ss_pred HHHHHHHhcCCCCCCccCCCCCCCCceEeccceeeehhhhhhhccCCCcccceeecccCCCCHHHHHHhhccChHHHHHH
Q 017907 4 TRRLRDLQSQPGNKICVDCAQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTMDSWSEIQIKKMEAGGNERLNTF 83 (364)
Q Consensus 4 ~r~LreL~~~p~Nk~CaDCGa~nP~WaSvn~GIFIC~~CSGiHR~LG~hiS~VKSvtmD~Ws~~eL~~Mk~gGN~~an~f 83 (364)
+++|+.|++.|+|++|||||+++|+|||++||||||++|+|+||.||+||||||||+||.|++++|++|+.+||.++|+|
T Consensus 24 ~~l~~~l~~~p~N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~LG~hiS~VrSl~lD~w~~~~l~~m~~~GN~~an~~ 103 (138)
T 2owa_A 24 DNFFQIVRNRPENRTCFDCESRNPTWLSLSFAVFICLNCSSDHRKMGVHISFVRSSDLDKFTPIQLVRMDIGGNGRARNY 103 (138)
T ss_dssp HHHHHHHHHSGGGGBCTTTCCBSCCEEETTTTEEECHHHHHHHHTTCTTTCCEEETTTSCCCHHHHHHHHHCCHHHHHHH
T ss_pred HHHHHHHHcCcCCCcCCCCcCCCCCeEEecCCEEEhHhhhHHHhCCCCCCCeeeecCcCcCCHHHHHHHHhhccHHHHHH
Confidence 45566799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Hhh-cCCCCCCCccccccchhHHHHHHHHHHHHc
Q 017907 84 LSQ-YGIPKETDIVTKYNTNAASIYRDRIQAIAE 116 (364)
Q Consensus 84 ~e~-~~~~~e~~I~~KY~s~aa~~yreki~a~~e 116 (364)
|++ ++..+..+|++||+++++.+||++|.++++
T Consensus 104 ~e~~~~~~~~~~~~~kY~s~~a~~Y~~kL~~~~~ 137 (138)
T 2owa_A 104 FKQVLGVNFSPKTKEYASSICGRQYKQILDSEIS 137 (138)
T ss_dssp HHHHTCTTCCGGGCHHHHSHHHHHHHHHHHHHTT
T ss_pred HHHHcCCCCCCCHHHHHhhHHHHHHHHHHHHHHh
Confidence 998 777777899999999999999999998865
No 4
>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3; arfgap domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=100.00 E-value=4.2e-39 Score=284.23 Aligned_cols=113 Identities=48% Similarity=0.977 Sum_probs=108.0
Q ss_pred HHHHHHHHhcCCCCCCccCCCCCCCCceEeccceeeehhhhhhhccCCCcccceeecccCC-CCHHHHHHhhccChHHHH
Q 017907 3 ATRRLRDLQSQPGNKICVDCAQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTMDS-WSEIQIKKMEAGGNERLN 81 (364)
Q Consensus 3 a~r~LreL~~~p~Nk~CaDCGa~nP~WaSvn~GIFIC~~CSGiHR~LG~hiS~VKSvtmD~-Ws~~eL~~Mk~gGN~~an 81 (364)
..++|++|++.|+|++||||++++|+|||++||||||++|+||||.||+||||||||+||. |+++||++|+.+||.++|
T Consensus 16 ~~~~l~~L~~~p~N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~LG~hiS~VrSl~LD~~W~~~~l~~m~~~GN~~an 95 (149)
T 2crw_A 16 ILTIFKRLRSVPTNKVCFDCGAKNPSWASITYGVFLCIDCSGSHRSLGVHLSFIRSTELDSNWSWFQLRCMQVGGNASAS 95 (149)
T ss_dssp HHHHHHHHHHSTTTSBCSSSCCBSCCCEETTTTEECCHHHHHHHHHHCTTTCCEECSSSCCCCCHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHhcCcCCCcCCCCcCCCCCcEEeccCEEEchhcchhhccCCCCCCeeeccccCCCCCHHHHHHHHHHhhHHHH
Confidence 4688999999999999999999999999999999999999999999999999999999996 999999999999999999
Q ss_pred HHHhhcCCCCCCCccccccchhHHHHHHHHHHHHc
Q 017907 82 TFLSQYGIPKETDIVTKYNTNAASIYRDRIQAIAE 116 (364)
Q Consensus 82 ~f~e~~~~~~e~~I~~KY~s~aa~~yreki~a~~e 116 (364)
+||++++.+ ..+|++||+++++.+||++|.++++
T Consensus 96 ~~~e~~~~~-~~~i~~KY~s~~a~~Yr~~l~~~~~ 129 (149)
T 2crw_A 96 SFFHQHGCS-TNDTNAKYNSRAAQLYREKIKSLAS 129 (149)
T ss_dssp HHHHHHCCC-CCCHHHHTTSHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCC-CcchhhCcCcHHHHHHHHHHHHHHH
Confidence 999998876 5789999999999999999998876
No 5
>2p57_A GTPase-activating protein ZNF289; zinc finger, GAP, structural genomics, structural genomics consortium, SGC, metal binding protein; 1.80A {Homo sapiens}
Probab=100.00 E-value=1.5e-38 Score=279.08 Aligned_cols=114 Identities=46% Similarity=0.941 Sum_probs=108.0
Q ss_pred HHHHHHHHhcCCCCCCccCCCCCCCCceEeccceeeehhhhhhhccCCCcccceeecccCC-CCHHHHHHhhccChHHHH
Q 017907 3 ATRRLRDLQSQPGNKICVDCAQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTMDS-WSEIQIKKMEAGGNERLN 81 (364)
Q Consensus 3 a~r~LreL~~~p~Nk~CaDCGa~nP~WaSvn~GIFIC~~CSGiHR~LG~hiS~VKSvtmD~-Ws~~eL~~Mk~gGN~~an 81 (364)
..++|+.|++.|+|++|||||+++|+|||++||||||++|+||||.||+|||+||||+||. |+++||++|+.+||.++|
T Consensus 24 ~~~~l~~L~~~p~N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~LG~hIS~VrSl~LD~~W~~~~l~~m~~~GN~~an 103 (144)
T 2p57_A 24 IQTLFKRLRAVPTNKACFDCGAKNPSWASITYGVFLCIDCSGVHRSLGVHLSFIRSTELDSNWNWFQLRCMQVGGNANAT 103 (144)
T ss_dssp HHHHHHHHHHSGGGGBCTTTCCBSCCEEEGGGTEEECHHHHHHHHHHCTTTCCEEESSSCCCCCHHHHHHHHHCCHHHHH
T ss_pred HHHHHHHHhcCCCCCcCCCCcCCCCCeEEeccCEEEhhhchHHHcCCCCCCCeeeecccCCCCCHHHHHHHHHhCHHHHH
Confidence 4678889999999999999999999999999999999999999999999999999999996 999999999999999999
Q ss_pred HHHhhcCCCCCCCccccccchhHHHHHHHHHHHHcC
Q 017907 82 TFLSQYGIPKETDIVTKYNTNAASIYRDRIQAIAEG 117 (364)
Q Consensus 82 ~f~e~~~~~~e~~I~~KY~s~aa~~yreki~a~~eg 117 (364)
+||++++.+. .+|++||++++|.+||++|+++++.
T Consensus 104 ~~~e~~g~~~-~~~~~KY~s~aA~~Yr~~l~~~~~~ 138 (144)
T 2p57_A 104 AFFRQHGCTA-NDANTKYNSRAAQMYREKIRQLGSA 138 (144)
T ss_dssp HHHHHTTCCC-CSHHHHHTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCC-CchhhccCcHHHHHHHHHHHHHHHH
Confidence 9999998764 4899999999999999999998764
No 6
>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A
Probab=100.00 E-value=1.3e-35 Score=259.64 Aligned_cols=120 Identities=27% Similarity=0.512 Sum_probs=104.5
Q ss_pred HHHHHHHHhcCCCCCCccCCCCCCCCceEeccceeeehhhhhhhccCCCcccceeecccCCCCHHHHHHhhccChHHHHH
Q 017907 3 ATRRLRDLQSQPGNKICVDCAQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTMDSWSEIQIKKMEAGGNERLNT 82 (364)
Q Consensus 3 a~r~LreL~~~p~Nk~CaDCGa~nP~WaSvn~GIFIC~~CSGiHR~LG~hiS~VKSvtmD~Ws~~eL~~Mk~gGN~~an~ 82 (364)
..++|++|++.|+|++|||||+++|+|||++||||||++|+||||.||+| |+||||+||.|++++|++|+.+||.++|+
T Consensus 12 ~~~~l~~l~~~p~N~~CaDCg~~~P~WaS~n~GvfiC~~CsgiHR~LG~~-s~VrSl~ld~w~~~~l~~m~~~GN~~an~ 90 (140)
T 2olm_A 12 HLKMLRDMTGLPHNRKCFDCDQRGPTYVNMTVGSFVCTSCSGSLRGLNPP-HRVKSISMTTFTQQEIEFLQKHGNEVCKQ 90 (140)
T ss_dssp HHHHHHHHHTSGGGGSCTTTCSSCCCEEETTTTEEECHHHHHHHTTSSSC-CCEEETTTCCCCHHHHHHHHHCHHHHHHH
T ss_pred HHHHHHHHhcCcCCCcCCCCCCCCCCceeeccCEEEchhccchhccCCCc-ceeeecCCCCCCHHHHHHHHHhccHHHHH
Confidence 46789999999999999999999999999999999999999999999997 99999999999999999999999999999
Q ss_pred HHhhcCCCCCCCccccccchhHHHHHHHHHHHHcCCCCCCCCcc
Q 017907 83 FLSQYGIPKETDIVTKYNTNAASIYRDRIQAIAEGRPWRDPPVV 126 (364)
Q Consensus 83 f~e~~~~~~e~~I~~KY~s~aa~~yreki~a~~egr~w~~pp~~ 126 (364)
|||++..+....++. ......++++|+++|+.+.|..||..
T Consensus 91 ~~e~~~~~~~~~~P~---~~d~~~~~~fIr~KYe~k~f~~~~~~ 131 (140)
T 2olm_A 91 IWLGLFDDRSSAIPD---FRDPQKVKEFLQEKYEKKRWYVPPEQ 131 (140)
T ss_dssp HHTTTCCTTTSCCCC---TTCHHHHHHHHHHHHTSCTTCCCHHH
T ss_pred HHHhhCCcccCCCCC---CCCHHHHHHHHHHHHcCCeeeCCccc
Confidence 999865443322221 22234688899999999999887653
No 7
>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural genomics, structural genomics consortium, SGC, protein transport; 1.90A {Homo sapiens}
Probab=100.00 E-value=1.3e-35 Score=257.83 Aligned_cols=115 Identities=36% Similarity=0.625 Sum_probs=101.0
Q ss_pred HHHHHHHhcCCCCCCccCCCCCCCCceEeccceeeehhhhhhhccCCCcccceeecccCCCCHHHHHHhhccChHHHHHH
Q 017907 4 TRRLRDLQSQPGNKICVDCAQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTMDSWSEIQIKKMEAGGNERLNTF 83 (364)
Q Consensus 4 ~r~LreL~~~p~Nk~CaDCGa~nP~WaSvn~GIFIC~~CSGiHR~LG~hiS~VKSvtmD~Ws~~eL~~Mk~gGN~~an~f 83 (364)
.++|++|++.|+|++|||||+++|+|||++||||||++|+||||.||+|||+||||+||.|++++|++|+.+||.++|+|
T Consensus 15 ~~~l~~L~~~p~N~~CaDCg~~~P~WaS~n~GvfiC~~CsgiHR~lG~hiS~VkSl~ld~w~~~~l~~m~~~GN~~an~~ 94 (134)
T 2iqj_A 15 QAVLANLLLEEDNKFCADCQSKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQWTQEQIQCMQEMGNGKANRL 94 (134)
T ss_dssp HHHHHHHTTSGGGGBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHcCcCCCcCCcCcCCCCCeEEecCCEEEhHhhhHHHhcCCCCCCceeeccccCCCHHHHHHHHHHchHHHHHH
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCCCCCCccccccchhHHHHHHHHHHHHcCCCCCCCC
Q 017907 84 LSQYGIPKETDIVTKYNTNAASIYRDRIQAIAEGRPWRDPP 124 (364)
Q Consensus 84 ~e~~~~~~e~~I~~KY~s~aa~~yreki~a~~egr~w~~pp 124 (364)
|+++.++. . .+ .......+++|+++|+.+.|..++
T Consensus 95 ~e~~lp~~-~-~~----P~~~~~~e~fIr~KY~~k~f~~~~ 129 (134)
T 2iqj_A 95 YEAYLPET-F-RR----PQIDPAVEGFIRDKYEKKKYMDRS 129 (134)
T ss_dssp HTTTCCSS-C-CC----CCSHHHHHHHHHHHHTSCTTCCTT
T ss_pred HHhcCCcc-C-CC----CCchHHHHHHHHHHHhCCeeeCCc
Confidence 99765432 1 11 111134678999999999998754
No 8
>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=100.00 E-value=2.1e-35 Score=258.53 Aligned_cols=117 Identities=34% Similarity=0.555 Sum_probs=102.2
Q ss_pred HHHHHHHHhcCCCCCCccCCCCCCCCceEeccceeeehhhhhhhccCCCcccceeecccCCCCHHHHHHhhccChHHHHH
Q 017907 3 ATRRLRDLQSQPGNKICVDCAQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTMDSWSEIQIKKMEAGGNERLNT 82 (364)
Q Consensus 3 a~r~LreL~~~p~Nk~CaDCGa~nP~WaSvn~GIFIC~~CSGiHR~LG~hiS~VKSvtmD~Ws~~eL~~Mk~gGN~~an~ 82 (364)
.+++|++|++.|+|++||||++++|+|||++||||||++|+||||.||+|||+||||+||.|+++||++|+.+||.++|+
T Consensus 16 ~~~~l~~L~~~p~N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~LG~hiS~VkSl~ld~w~~~~l~~m~~~GN~~an~ 95 (141)
T 2crr_A 16 HQLILSKLLREEDNKYCADCEAKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQWTAEQIQCMQDMGNTKARL 95 (141)
T ss_dssp HHHHHHHHHHSGGGSSCSSSCCSSCCSEETTTTEECCHHHHHHHHHHCTTTCCCBCSSSSCCCHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHhCccCCcCCCCCCCCCCeEEeccCeEEhhhhhHhHhcCCCCCCeeeECCCCCCCHHHHHHHHHHccHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCCCCCCccccccchhHHHHHHHHHHHHcCCCCCCCCc
Q 017907 83 FLSQYGIPKETDIVTKYNTNAASIYRDRIQAIAEGRPWRDPPV 125 (364)
Q Consensus 83 f~e~~~~~~e~~I~~KY~s~aa~~yreki~a~~egr~w~~pp~ 125 (364)
||+++.++. . .+. .. ....+++|+++|+.+.|..++.
T Consensus 96 ~~e~~lp~~-~-~~P--~~--~~~~e~fIr~KY~~k~f~~~~~ 132 (141)
T 2crr_A 96 LYEANLPEN-F-RRP--QT--DQAVEFFIRDKYEKKKYYDKNA 132 (141)
T ss_dssp HGGGSCCTT-C-CCC--CS--HHHHHHHHHHHHTSCTTCCCGG
T ss_pred HHHhcCCcc-c-CCC--Cc--hHHHHHHHHHHHhcCcccCCCc
Confidence 999875442 1 111 11 1245789999999999987543
No 9
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=100.00 E-value=3.6e-33 Score=268.66 Aligned_cols=122 Identities=48% Similarity=0.969 Sum_probs=114.9
Q ss_pred HHHHHHHHhcCCCCCCccCCCCCCCCceEeccceeeehhhhhhhccCCCcccceeecccCCCCHHHHHHhhccChHHHHH
Q 017907 3 ATRRLRDLQSQPGNKICVDCAQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTMDSWSEIQIKKMEAGGNERLNT 82 (364)
Q Consensus 3 a~r~LreL~~~p~Nk~CaDCGa~nP~WaSvn~GIFIC~~CSGiHR~LG~hiS~VKSvtmD~Ws~~eL~~Mk~gGN~~an~ 82 (364)
.+++|++|++.|+|+.|||||+++|+|||++||||||++|+|+||.||+|||+||||+||.|++++|++|+.+||.++|+
T Consensus 24 ~~~~~~~~~~~~~n~~c~dc~~~~~~~~~~~~~~~~c~~c~~~hr~~~~~~s~v~s~~~~~~~~~~~~~~~~~gN~~~n~ 103 (329)
T 3o47_A 24 TRKVLKEVRVQDENNVCFECGAFNPQWVSVTYGIWICLECSGRHRGLGVHLSFVRSVTMDKWKDIELEKMKAGGNAKFRE 103 (329)
T ss_dssp HHHHHHHHHHSTTTTBCTTTCCBSCCEEEGGGTEEECHHHHHHHHHHCTTTCCEEESSSCCCCHHHHHHHHHCCHHHHHH
T ss_pred HHHHHHHHHcCCCCCcCCCCCCCCCCeEEecCCEEEChhhhhhhcccCCCcCEEeeccccCCCHHHHHHHHHhCcHHHHH
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCC-CCCCCccccccchhHHHHHHHHHHHHcCCCCCCCC
Q 017907 83 FLSQYGI-PKETDIVTKYNTNAASIYRDRIQAIAEGRPWRDPP 124 (364)
Q Consensus 83 f~e~~~~-~~e~~I~~KY~s~aa~~yreki~a~~egr~w~~pp 124 (364)
||+++.. .....+.++|.+.++..|++++.++++++.|..++
T Consensus 104 ~~e~~~~~~~~~~i~~~y~s~~A~lYr~kl~~~~~~~~~~~~~ 146 (329)
T 3o47_A 104 FLESQEDYDPCWSLQEKYNSRAAALFRDKVVALAEGREWSLES 146 (329)
T ss_dssp HHHTCSSCCTTCCHHHHHHSHHHHHHHHHHHHHHTTCCCCSCC
T ss_pred HHHhcCCCCCCCCccccccchHHHHHhhhccccccCCcccccc
Confidence 9998643 34678999999999999999999999999997643
No 10
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.96 E-value=1.8e-30 Score=254.52 Aligned_cols=119 Identities=32% Similarity=0.491 Sum_probs=99.8
Q ss_pred HHHHHHHhcCCCCCCccCCCCCCCCceEeccceeeehhhhhhhccCCCcccceeecccCCCCHHHHHHhhccChHHHHHH
Q 017907 4 TRRLRDLQSQPGNKICVDCAQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTMDSWSEIQIKKMEAGGNERLNTF 83 (364)
Q Consensus 4 ~r~LreL~~~p~Nk~CaDCGa~nP~WaSvn~GIFIC~~CSGiHR~LG~hiS~VKSvtmD~Ws~~eL~~Mk~gGN~~an~f 83 (364)
+++|++|++.|+|++||||++++|+|||++||||||++|+||||.||+|||+||||+||.|++++|++|+.+||.++|+|
T Consensus 33 ~~~~~~~~~~~~n~~c~dc~~~~p~w~s~~~g~~~c~~c~~~hr~lg~~~s~v~s~~~d~w~~~~~~~~~~~gn~~~n~~ 112 (368)
T 3jue_A 33 GHVVAQVQSVDGNAQCCDCREPAPEWASINLGVTLCIQCSGIHRSLGVHFSKVRSLTLDSWEPELVKLMCELGNVIINQI 112 (368)
T ss_dssp CCHHHHHHTSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHHcCCCcCcCCCCCCCCCCeEEecCCeEEcHhHHHHHhccCCCcCeeEEeecccccHHHHHHHHHHccHHHHHH
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCCCCCCccccccchhHHHHHHHHHHHHcCCCCCCCC
Q 017907 84 LSQYGIPKETDIVTKYNTNAASIYRDRIQAIAEGRPWRDPP 124 (364)
Q Consensus 84 ~e~~~~~~e~~I~~KY~s~aa~~yreki~a~~egr~w~~pp 124 (364)
||+...+.....+..-.. .....++|+++|+.+.|..+.
T Consensus 113 ~e~~~~~~~~~kp~~~~~--~~~re~fIr~KY~~k~f~~~l 151 (368)
T 3jue_A 113 YEARVEAMAVKKPGPSCS--RQEKEAWIHAKYVEKKFLTKL 151 (368)
T ss_dssp HTTTTTTTTCCCCCTTSC--HHHHHHHHHHHHTSCTTCCSC
T ss_pred HHhhcccccCcCCCCCCC--HHHHHHHHHHHHHhhcccccc
Confidence 997654311100001111 123456899999999997654
No 11
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C*
Probab=99.96 E-value=3e-30 Score=255.76 Aligned_cols=119 Identities=32% Similarity=0.555 Sum_probs=101.1
Q ss_pred HHHHHHHHhcCCCCCCccCCCCCCCCceEeccceeeehhhhhhhccCCCcccceeecccCCCCHHHHHHhhccChHHHHH
Q 017907 3 ATRRLRDLQSQPGNKICVDCAQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTMDSWSEIQIKKMEAGGNERLNT 82 (364)
Q Consensus 3 a~r~LreL~~~p~Nk~CaDCGa~nP~WaSvn~GIFIC~~CSGiHR~LG~hiS~VKSvtmD~Ws~~eL~~Mk~gGN~~an~ 82 (364)
.+++|++|++.|+|+.|||||+++|+|||++||||||++||||||.| +|||+||||+||.|++++|++|+.+||.++|+
T Consensus 21 ~~~~l~~l~~~~~N~~C~dC~~~~p~w~s~~~g~~~C~~Csg~hr~l-~his~v~s~~ld~w~~~~~~~~~~~gN~~~~~ 99 (386)
T 3lju_X 21 RRRAVLELLQRPGNARCADCGAPDPDWASYTLGVFICLSCSGIHRNI-PQVSKVKSVRLDAWEEAQVEFMASHGNDAARA 99 (386)
T ss_dssp HHHHHHHHTTSGGGSBCTTTCCBSCCEEETTTTEEECHHHHHHHHTC-TTTCCEEETTTSCCCHHHHHHHHHSSHHHHHH
T ss_pred HHHHHHHHhcCcCCCcCccCCCCCCCeEEecccEEEhhhhchHhhCC-CccceeeeecccCCCHHHHHHHHHhcchHHHH
Confidence 57899999999999999999999999999999999999999999999 99999999999999999999999999999999
Q ss_pred HHhhcCCCCCCCccccccchhHHHHHHHHHHHHcCCCCCCCCc
Q 017907 83 FLSQYGIPKETDIVTKYNTNAASIYRDRIQAIAEGRPWRDPPV 125 (364)
Q Consensus 83 f~e~~~~~~e~~I~~KY~s~aa~~yreki~a~~egr~w~~pp~ 125 (364)
||+++.++. ...+. -.. ......++|+++|+.+.|..|+.
T Consensus 100 ~~e~~~~~~-~~~p~-~~~-~~~~~e~fIr~KY~~~~f~~~~~ 139 (386)
T 3lju_X 100 RFESKVPSF-YYRPT-PSD-CQLLREQWIRAKYERQEFIYPEK 139 (386)
T ss_dssp HHTTTCCTT-SCCCC-TTS-CHHHHHHHHHHHHTSCTTTSGGG
T ss_pred HHhccCCcc-CCCCC-Ccc-chHHHHHEHHhhhCCCEEECCcc
Confidence 999765432 11111 111 11233458999999999987654
No 12
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.95 E-value=9e-28 Score=226.79 Aligned_cols=119 Identities=27% Similarity=0.462 Sum_probs=98.3
Q ss_pred HHHHHHHHhcCCCCCCccCCCCCCCCceEeccceeeehhhhhhhccCCCcccceeecccCCCCHHHHHHhhccChHHHHH
Q 017907 3 ATRRLRDLQSQPGNKICVDCAQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTMDSWSEIQIKKMEAGGNERLNT 82 (364)
Q Consensus 3 a~r~LreL~~~p~Nk~CaDCGa~nP~WaSvn~GIFIC~~CSGiHR~LG~hiS~VKSvtmD~Ws~~eL~~Mk~gGN~~an~ 82 (364)
++++|++|++.|+|++|+||++++|+|+|++||||||++|+|+||.||+|||+||||+||.|++++|.+|+.+||..+|+
T Consensus 29 ~~~~~~~~~~~~~n~~c~dc~~~~p~w~s~~~g~~~c~~cs~~hr~lg~~is~v~sl~lD~w~~~~l~~~~~~GN~~~n~ 108 (301)
T 2b0o_E 29 TKLLIAEVKSRPGNSQCCDCGAADPTWLSTNLGVLTCIQCSGVHRELGVRFSRMQSLTLDLLGPSELLLALNMGNTSFNE 108 (301)
T ss_dssp HHHHHHHHHTSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCHHHHHHHHHCCHHHHHH
T ss_pred HHHHHHHHhcCCCCCcCCCCCCCCCCeEEeecCeEEcHHHHHHHHhhCCCcccccccCcCCCCHHHHHHHHHcCCHHHHH
Confidence 57789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCCCCCCccccccchhHHHHHHHHHHHHcCCCCCCC
Q 017907 83 FLSQYGIPKETDIVTKYNTNAASIYRDRIQAIAEGRPWRDP 123 (364)
Q Consensus 83 f~e~~~~~~e~~I~~KY~s~aa~~yreki~a~~egr~w~~p 123 (364)
+|+...+......+.. ........++|++++..+.|..+
T Consensus 109 i~E~~l~~~~~~kP~~--~s~~~~r~~~I~~Ky~~~~f~~~ 147 (301)
T 2b0o_E 109 VMEAQLPSHGGPKPSA--ESDMGTRRDYIMAKYVEHRFARR 147 (301)
T ss_dssp HHTTTCCSSSCSCCCT--TCCHHHHHHHHHHHHTSCTTSCC
T ss_pred HHHHhhhhccCCCCCC--cccHHHHHHHHHHHHHhhhhhcc
Confidence 9986543321111111 11122445678888888877553
No 13
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.94 E-value=9.4e-28 Score=223.95 Aligned_cols=119 Identities=27% Similarity=0.504 Sum_probs=100.5
Q ss_pred HHHHHHHHhcCCCCCCccCCCCCCCCceEeccceeeehhhhhhhccCCCcccceeecccCCCCHHHHHHhhccChHHHHH
Q 017907 3 ATRRLRDLQSQPGNKICVDCAQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTMDSWSEIQIKKMEAGGNERLNT 82 (364)
Q Consensus 3 a~r~LreL~~~p~Nk~CaDCGa~nP~WaSvn~GIFIC~~CSGiHR~LG~hiS~VKSvtmD~Ws~~eL~~Mk~gGN~~an~ 82 (364)
++++|++|++.|+|+.|+|||+++|+|+|++||||||++|+|+||.||+|||+||||+||.|.+++|..|+.+||..+|+
T Consensus 4 ~~~~~~~~~~~~~n~~c~dc~~~~p~w~s~~~g~~~c~~c~~~hr~lg~~is~v~s~~~d~~~~~~l~~~~~~GN~~~n~ 83 (278)
T 1dcq_A 4 TKEIISEVQRMTGNDVCCDCGAPDPTWLSTNLGILTCIECSGIHRELGVHYSRMQSLTLDVLGTSELLLAKNIGNAGFNE 83 (278)
T ss_dssp HHHHHHHHHHSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCGGGGHHHHHSCHHHHHH
T ss_pred HHHHHHHHHcCCCCCcCCCCCCCCCCeEEecCCeEEcHHHHHHHhhcCCCcceeeeeecCCCCHHHHHHHHHcCcHHHHH
Confidence 68899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCCCCCCccccccchhHHHHHHHHHHHHcCCCCCCC
Q 017907 83 FLSQYGIPKETDIVTKYNTNAASIYRDRIQAIAEGRPWRDP 123 (364)
Q Consensus 83 f~e~~~~~~e~~I~~KY~s~aa~~yreki~a~~egr~w~~p 123 (364)
||+...+.. .+.+....+. .....++|++++..+.|..+
T Consensus 84 i~e~~l~~~-~~~kP~~~s~-~~~~~~fI~aKYl~~~f~~~ 122 (278)
T 1dcq_A 84 IMECCLPSE-DPVKPNPGSD-MIARKDYITAKYMERRYARK 122 (278)
T ss_dssp HHTTTCCSS-SCCSCCTTCC-HHHHHHHHHHHHTTCTTSCC
T ss_pred HHHhhCChh-hcCCCCCCCC-HHHHHHHHHHHHHHhhcccc
Confidence 999754332 1111112111 13456788888988887654
No 14
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.94 E-value=1.5e-27 Score=238.42 Aligned_cols=120 Identities=27% Similarity=0.450 Sum_probs=101.3
Q ss_pred HHHHHHHHhcCCCCCCccCCCCCCCCceEeccceeeehhhhhhhccCCCcccceeecccCCCCHHHHHHhhccChHHHHH
Q 017907 3 ATRRLRDLQSQPGNKICVDCAQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTMDSWSEIQIKKMEAGGNERLNT 82 (364)
Q Consensus 3 a~r~LreL~~~p~Nk~CaDCGa~nP~WaSvn~GIFIC~~CSGiHR~LG~hiS~VKSvtmD~Ws~~eL~~Mk~gGN~~an~ 82 (364)
.+++|++|++.|+|+.|+||++++|+|+|+++|||||++|||+||.||+|||+||||+||.|++++|++|+.+||..+|+
T Consensus 10 ~~~~~~~~~~~~~n~~c~dc~~~~p~w~s~~~~~~~c~~c~~~hr~lg~~~s~vrsl~ld~w~~~~~~l~~~~GN~~an~ 89 (497)
T 3lvq_E 10 TKLLIAEVKSRPGNSQCCDCGAADPTWLSTNLGVLTCIQCSGVHRELGVRFSRMQSLTLDLLGPSELLLALNMGNTSFNE 89 (497)
T ss_dssp HHHHHHHHHTSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCGGGGTTTTTCCHHHHHH
T ss_pred HHHHHHHHhcCCCCCcccCCCCCCCCEEEechhHHhHHhhHHHHHhhccccceecccccCCCCHHHHHHHHHHhhHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCCCCCCccccccchhHHHHHHHHHHHHcCCCCCCCC
Q 017907 83 FLSQYGIPKETDIVTKYNTNAASIYRDRIQAIAEGRPWRDPP 124 (364)
Q Consensus 83 f~e~~~~~~e~~I~~KY~s~aa~~yreki~a~~egr~w~~pp 124 (364)
+|+...++.....+.. .......+++|+++|+.+.|..++
T Consensus 90 i~E~~lp~~~~~kP~~--~s~~~~re~fIraky~~~~f~~~~ 129 (497)
T 3lvq_E 90 VMEAQLPSHGGPKPSA--ESDMGTRRDYIMAKYVEHRFARRC 129 (497)
T ss_dssp HHTTTCCSSSCSCCCT--TCCHHHHHHHHHHHHTTCTTSCCC
T ss_pred HHHhhcccccCCCCCC--cCcHHHHHHHHHHHhhcccccccc
Confidence 9997654322111111 112234566888999988886643
No 15
>1u5k_A Hypothetical protein; OBD-fold, Zn-binding, recombination,replication; 2.00A {Deinococcus radiodurans} SCOP: b.40.4.13 g.45.1.2 PDB: 1w3s_A 2v1c_C
Probab=82.92 E-value=0.65 Score=42.32 Aligned_cols=48 Identities=15% Similarity=0.427 Sum_probs=35.8
Q ss_pred hcCCCCCCccCCCCCCCCceEeccceeeehhhhhhhccCCCcccceeecccCCCCHHHHHHhhc
Q 017907 11 QSQPGNKICVDCAQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTMDSWSEIQIKKMEA 74 (364)
Q Consensus 11 ~~~p~Nk~CaDCGa~nP~WaSvn~GIFIC~~CSGiHR~LG~hiS~VKSvtmD~Ws~~eL~~Mk~ 74 (364)
--.|.=..|+.||.+.+.+.++..|.++|..|...+ ..+.+++..|+.
T Consensus 145 G~~p~l~~C~~cg~~~~~~fs~~~Gg~~c~~~~~~~----------------~l~~~~l~~l~~ 192 (244)
T 1u5k_A 145 GVIPQTARCARCGAPDPEHPDPLGGQLLCSKCAALP----------------PYPPAVLDFLRH 192 (244)
T ss_dssp SSCCCCSBCTTTCCBSCCEECTTTSSEECTTTCSSC----------------CCCHHHHHHHHH
T ss_pred CCCCCcCccccCCCCCCCcEecccCEEECcccCCCC----------------CCCHHHHHHHHH
Confidence 334666799999998667889999999999995322 356677777754
No 16
>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A
Probab=82.70 E-value=0.79 Score=32.72 Aligned_cols=39 Identities=26% Similarity=0.668 Sum_probs=32.8
Q ss_pred CCCCCccCCCCC-CCCceEeccceeeehhhhhhhccCCCc
Q 017907 14 PGNKICVDCAQK-NPQWASVSYGVFMCLECSGKHRGLGVH 52 (364)
Q Consensus 14 p~Nk~CaDCGa~-nP~WaSvn~GIFIC~~CSGiHR~LG~h 52 (364)
...+.|++|+.. -|.|-.-..|..||-.|.-.++..|++
T Consensus 2 ~~~~~C~~C~tt~Tp~WR~gp~G~~LCNaCGl~~k~~~~~ 41 (46)
T 1gnf_A 2 SEARECVNCGATATPLWRRDRTGHYLCNACGLYHKMNGQN 41 (46)
T ss_dssp CCSCCCTTTCCCCCSSCBCCTTCCCBCSHHHHHHHHTCSC
T ss_pred CCCCCCCCcCCCCCCcCccCCCCCccchHHHHHHHHcCCC
Confidence 356899999985 789999999999999999888776654
No 17
>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*
Probab=82.30 E-value=0.85 Score=32.07 Aligned_cols=35 Identities=26% Similarity=0.578 Sum_probs=29.6
Q ss_pred CCccCCCCC-CCCceEeccceeeehhhhhhhccCCC
Q 017907 17 KICVDCAQK-NPQWASVSYGVFMCLECSGKHRGLGV 51 (364)
Q Consensus 17 k~CaDCGa~-nP~WaSvn~GIFIC~~CSGiHR~LG~ 51 (364)
+.|++|+.. -|.|-.-..|-.||-.|.-..|..|+
T Consensus 2 ~~C~~C~tt~Tp~WR~gp~G~~LCNaCGl~~k~~~~ 37 (43)
T 2vut_I 2 TTCTNCFTQTTPLWRRNPEGQPLCNACGLFLKLHGV 37 (43)
T ss_dssp CCCSSSCCCCCSCCEECTTSCEECHHHHHHHHHHSS
T ss_pred CcCCccCCCCCCccccCCCCCcccHHHHHHHHHhCC
Confidence 579999985 78999999999999999887766554
No 18
>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*
Probab=78.35 E-value=1.1 Score=34.08 Aligned_cols=39 Identities=15% Similarity=0.411 Sum_probs=32.8
Q ss_pred CCCCCCccCCCCC-CCCceEeccceeeehhhhhhhccCCC
Q 017907 13 QPGNKICVDCAQK-NPQWASVSYGVFMCLECSGKHRGLGV 51 (364)
Q Consensus 13 ~p~Nk~CaDCGa~-nP~WaSvn~GIFIC~~CSGiHR~LG~ 51 (364)
......|++|+.. -|.|=.-..|-.||-.|.-..+..++
T Consensus 4 ~~~~~~C~~C~tt~Tp~WR~gp~G~~LCNACGl~~~~~~~ 43 (63)
T 3dfx_A 4 RRAGTSCANCQTTTTTLWRRNANGDPVCNACGLYYKLHNI 43 (63)
T ss_dssp CCTTCCCTTTCCSCCSSCCCCTTSCCCCHHHHHHHHHHSS
T ss_pred CCCCCcCCCcCCCCCCccCCCCCCCchhhHHHHHHHHcCC
Confidence 4567899999985 78999999999999999887776654
No 19
>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*
Probab=77.11 E-value=1.8 Score=33.07 Aligned_cols=38 Identities=26% Similarity=0.562 Sum_probs=32.2
Q ss_pred CCCCCccCCCC-CCCCceEeccceeeehhhhhhhccCCC
Q 017907 14 PGNKICVDCAQ-KNPQWASVSYGVFMCLECSGKHRGLGV 51 (364)
Q Consensus 14 p~Nk~CaDCGa-~nP~WaSvn~GIFIC~~CSGiHR~LG~ 51 (364)
.....|+.|+. .-|.|-.-..|..||-.|.-..+..++
T Consensus 7 ~~~~~C~~C~t~~Tp~WR~gp~G~~LCNaCGl~~~~~~~ 45 (66)
T 4gat_A 7 NGPTTCTNCFTQTTPLWRRNPEGQPLCNACGLFLKLHGV 45 (66)
T ss_dssp SSSCCCTTTCCCCCSSCEEETTTEEECHHHHHHHHHHCS
T ss_pred CCCCCCCCCCCCCCCcCCcCCCCCCccHHHHHHHHHcCC
Confidence 45689999998 489999999999999999887776554
No 20
>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1jj2_Y 1k73_1* 1k8a_1* 1k9m_1* 1kc8_1* 1kd1_1* 1kqs_Y* 1m1k_1* 1m90_1* 1n8r_1* 1nji_1* 1q7y_1* 1q81_1* 1q82_1* 1q86_1* 1qvf_Y 1qvg_Y 1w2b_Y 3cxc_Y*
Probab=71.04 E-value=3.1 Score=32.40 Aligned_cols=40 Identities=23% Similarity=0.416 Sum_probs=32.2
Q ss_pred HHHHHHHH-hcCCCCCCccCCCCCCCCceEeccceeeehhhhh
Q 017907 3 ATRRLRDL-QSQPGNKICVDCAQKNPQWASVSYGVFMCLECSG 44 (364)
Q Consensus 3 a~r~LreL-~~~p~Nk~CaDCGa~nP~WaSvn~GIFIC~~CSG 44 (364)
.+++++++ ..++....|.-||........ .||+.|..|.-
T Consensus 13 lRK~vkkie~~q~~ky~C~fCgk~~vkR~a--~GIW~C~~C~~ 53 (73)
T 1ffk_W 13 IRVRVRDVEIKHKKKYKCPVCGFPKLKRAS--TSIWVCGHCGY 53 (73)
T ss_pred HHHHHHHHHHhcccCccCCCCCCceeEEEE--eEEEECCCCCc
Confidence 57778887 888899999999986655544 69999999954
No 21
>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans}
Probab=65.11 E-value=1.6 Score=33.87 Aligned_cols=38 Identities=18% Similarity=0.427 Sum_probs=29.6
Q ss_pred CCCCCccCCCCC-CCCceE--eccceeeehhhhhhhccCCCc
Q 017907 14 PGNKICVDCAQK-NPQWAS--VSYGVFMCLECSGKHRGLGVH 52 (364)
Q Consensus 14 p~Nk~CaDCGa~-nP~WaS--vn~GIFIC~~CSGiHR~LG~h 52 (364)
.....|+.|+.. -|.|-. -.-| .||-.|.-.++..+++
T Consensus 6 ~~~~~C~nC~tt~Tp~WRrg~~~~g-~LCNACGl~~~~~~~~ 46 (71)
T 2kae_A 6 KKSFQCSNCSVTETIRWRNIRSKEG-IQCNACFIYQRKYNKT 46 (71)
T ss_dssp --CCCCSSSCCSCCSSCCCCSSSSC-CCSSHHHHHHHHHHSC
T ss_pred CCCCcCCccCCCCCCccccCCCCCC-ccchHHHHHHHHhCCC
Confidence 345799999984 789998 6777 8999999888876653
No 22
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=63.33 E-value=3.9 Score=34.12 Aligned_cols=37 Identities=27% Similarity=0.719 Sum_probs=30.1
Q ss_pred CCCccCCCCC-CCCceEeccceeeehhhhhhhccCCCc
Q 017907 16 NKICVDCAQK-NPQWASVSYGVFMCLECSGKHRGLGVH 52 (364)
Q Consensus 16 Nk~CaDCGa~-nP~WaSvn~GIFIC~~CSGiHR~LG~h 52 (364)
-+.|++|++. -|.|-.-..|-+||-.|.-.++..|.+
T Consensus 5 ~~~C~~Cg~~~Tp~WRr~~~g~~lCnaCgl~~Kl~G~n 42 (115)
T 4hc9_A 5 GRECVNCGATSTPLWRRDGTGHYLCNACGLYHKMNGQN 42 (115)
T ss_dssp -CCCTTTCCSCCSSCEECTTSCEECHHHHHHHHHHSSC
T ss_pred CCCCCCCCCccCCcceECCCCCCcCcchhhhhhhcccc
Confidence 4789999984 899999999999999998777654443
No 23
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=52.65 E-value=5.2 Score=38.57 Aligned_cols=47 Identities=19% Similarity=0.307 Sum_probs=23.5
Q ss_pred ChHHHHHHHHh---cCCCC--CCccCCCCCCCCc-eEeccceeeehhhhhhhc
Q 017907 1 MAATRRLRDLQ---SQPGN--KICVDCAQKNPQW-ASVSYGVFMCLECSGKHR 47 (364)
Q Consensus 1 maa~r~LreL~---~~p~N--k~CaDCGa~nP~W-aSvn~GIFIC~~CSGiHR 47 (364)
|++++++..-. ...-| ..|-+||..+|.- ....-|-.||..|.-|-.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~Cp~Cg~~~~~iv~D~~~G~~vC~~CG~Vl~ 53 (345)
T 3k7a_M 1 MMTRESIDKRAGRRGPNLNIVLTCPECKVYPPKIVERFSEGDVVCALCGLVLS 53 (345)
T ss_dssp ----------------CCCCCCCCSTTCCSCCCCCCCSSSCSCCCSSSCCCCC
T ss_pred CccHHHHHhcccccCccccCCCcCcCCCCCCCceEEECCCCCEecCCCCeEcc
Confidence 78888776541 11222 3799999976532 244679999999987653
No 24
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=50.71 E-value=5.9 Score=31.37 Aligned_cols=41 Identities=20% Similarity=0.547 Sum_probs=30.4
Q ss_pred HHHHHHHH-hcCCCCCCccCCCCCCCCceEeccceeeehhhhhh
Q 017907 3 ATRRLRDL-QSQPGNKICVDCAQKNPQWASVSYGVFMCLECSGK 45 (364)
Q Consensus 3 a~r~LreL-~~~p~Nk~CaDCGa~nP~WaSvn~GIFIC~~CSGi 45 (364)
.++++++| ..+...-.|..||... --....||+.|..|-..
T Consensus 13 lRk~vk~ie~~q~~~y~Cp~CG~~~--v~r~atGiW~C~~Cg~~ 54 (83)
T 1vq8_Z 13 SRRRVAEIESEMNEDHACPNCGEDR--VDRQGTGIWQCSYCDYK 54 (83)
T ss_dssp HHHHHHHHHHHHHSCEECSSSCCEE--EEEEETTEEEETTTCCE
T ss_pred HHHHHHHHHHhccccCcCCCCCCcc--eeccCCCeEECCCCCCE
Confidence 46677776 6777788999999842 23455799999999543
No 25
>1xq8_A Alpha-synuclein; micelle-bound helix, lipid binding protein; NMR {Homo sapiens} SCOP: h.7.1.1 PDB: 2kkw_A
Probab=49.59 E-value=11 Score=32.71 Aligned_cols=79 Identities=24% Similarity=0.255 Sum_probs=50.8
Q ss_pred hhhhhccchhhHHHHHHHHHHHHHHHhhhhhhhhccccccccc------chhchhhhhhhhhccccccc-hhhhhhhHHH
Q 017907 166 LSAVSQGFGRISLVAASAAQSAATVVQAGTREFTSKVREGGYD------HKVNETVNVVTAKTSEIGQR-TWGIMKGVMA 238 (364)
Q Consensus 166 ~ssLssG~g~fS~~A~~~A~~A~~~~~~~~k~~~~kvkeg~l~------~~v~~~v~~va~Kv~e~g~~-gw~~~~gv~~ 238 (364)
|..|-.||+..-.+...+|...|..+..+ .+|-|||-.- +-|-..|+.|++|+-|-+.- +=+.+.||++
T Consensus 1 mdvf~kg~skaKeGv~~AAEKTKeGV~~a----aeKTKEGV~~V~~KTKegvV~~v~tVa~KT~E~a~~v~~a~v~gvn~ 76 (140)
T 1xq8_A 1 MDVFMKGLSKAKEGVVAAAEKTKQGVAEA----AGKTKEGVLYVGSKTKEGVVHGVATVAEKTKEQVTNVGGAVVTGVTA 76 (140)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHSCCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHhHHHHHHHHHHHHHHHHHHHHHH----HHHhhHHHHHHHHhcccceeechhHHHHHHHHHhhhhhhhhhhhhHH
Confidence 34566777777777777777777644332 1222332221 23334478899998874433 5567889999
Q ss_pred Hhhhhhhhhh
Q 017907 239 MASQKVEEYT 248 (364)
Q Consensus 239 ~~s~kvE~~~ 248 (364)
.+...||+..
T Consensus 77 Va~ktvEga~ 86 (140)
T 1xq8_A 77 VAQKTVEGAG 86 (140)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhh
Confidence 9999999876
No 26
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=49.35 E-value=13 Score=30.90 Aligned_cols=39 Identities=15% Similarity=0.409 Sum_probs=32.6
Q ss_pred CCCCCccCCCCC-CCCceEeccceeeehhhhhhhccCCCc
Q 017907 14 PGNKICVDCAQK-NPQWASVSYGVFMCLECSGKHRGLGVH 52 (364)
Q Consensus 14 p~Nk~CaDCGa~-nP~WaSvn~GIFIC~~CSGiHR~LG~h 52 (364)
.....|+.|+.. -|.|-.-..|-.||-.|.-..+..+++
T Consensus 57 ~~~~~C~~C~t~~tp~WRr~~~g~~lCNaCgl~~~~~~~~ 96 (115)
T 4hc9_A 57 RAGTSCANCQTTTTTLWRRNANGDPVCNACGLYYKLHNIN 96 (115)
T ss_dssp CTTCCCTTTCCSCCSSCEECTTSCEECHHHHHHHHHHSSC
T ss_pred cccccCCCcCCCCcceeEECCCCCCcchHHHHHHHHhCCC
Confidence 456899999984 799999999999999998877766654
No 27
>1tjl_A DNAK suppressor protein; DKSA, transcription factor, RNA polymerase, stringent response, PPGPP, riken structural genomics/proteomics initiative; 2.00A {Escherichia coli} SCOP: a.2.14.1 g.39.1.13 PDB: 3h3p_S
Probab=49.24 E-value=5.4 Score=34.69 Aligned_cols=34 Identities=12% Similarity=0.263 Sum_probs=22.9
Q ss_pred CCCCCccCCCCCCCC-ceEeccceeeehhhhhhhc
Q 017907 14 PGNKICVDCAQKNPQ-WASVSYGVFMCLECSGKHR 47 (364)
Q Consensus 14 p~Nk~CaDCGa~nP~-WaSvn~GIFIC~~CSGiHR 47 (364)
..-..|.+||.+=|. -.-.--++-+|+.|...|-
T Consensus 109 g~yg~C~~Cg~~Ip~~Rl~a~P~a~~Ci~Cq~~~E 143 (151)
T 1tjl_A 109 EDFGYCESCGVEIGIRRLEARPTADLCIDCKTLAE 143 (151)
T ss_dssp TCCSBCSSSSCBCCHHHHHHCTTCCSCHHHHHHHH
T ss_pred CCCceeCCCCCcchHHHHhcCCCcchhHHHHHHHH
Confidence 456799999997442 1112236788999998764
No 28
>2kgo_A Uncharacterized protein YBII; Zn finger, partially disordered, structural proteomics, META binding, zinc-finger, structural genomics; NMR {Escherichia coli}
Probab=46.52 E-value=2.4 Score=35.28 Aligned_cols=33 Identities=24% Similarity=0.565 Sum_probs=22.0
Q ss_pred CCCCccCCCCCCCC-ceEeccceeeehhhhhhhc
Q 017907 15 GNKICVDCAQKNPQ-WASVSYGVFMCLECSGKHR 47 (364)
Q Consensus 15 ~Nk~CaDCGa~nP~-WaSvn~GIFIC~~CSGiHR 47 (364)
.--.|.+||.+=|. -.-.--++.+|+.|...+-
T Consensus 55 syG~C~~CGe~Ip~~RL~A~P~a~~Cv~Cq~~~E 88 (108)
T 2kgo_A 55 SLDECEECGAPIPQARREAIPGVRLCIHCQQEKD 88 (108)
T ss_dssp CCSBCTTTCCBCCHHHHHHSTTCCSCHHHHHHHH
T ss_pred cCceecccCCcccHHHHhcCCCccccHHHHHHHH
Confidence 35799999997442 1122336788999998654
No 29
>3cc2_Z 50S ribosomal protein L37AE, 50S ribosomal protein L32E; genomic sequnece for R-proteins, ribonucleoprotein, ribosoma protein, RNA-binding; HET: 1MA OMU OMG UR3 PSU; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 3cc4_Z* 3cc7_Z* 3cce_Z* 3ccj_Z* 3ccl_Z* 3ccm_Z* 3ccq_Z* 3ccr_Z* 3ccs_Z* 3ccu_Z* 3ccv_Z* 3cd6_Z* 3cma_Z* 3cme_Z* 3i55_Z* 3i56_Z* 3cpw_Y* 4adx_Z
Probab=46.45 E-value=5 Score=33.90 Aligned_cols=40 Identities=18% Similarity=0.534 Sum_probs=30.2
Q ss_pred HHHHHHHH-hcCCCCCCccCCCCCCCCceEeccceeeehhhhh
Q 017907 3 ATRRLRDL-QSQPGNKICVDCAQKNPQWASVSYGVFMCLECSG 44 (364)
Q Consensus 3 a~r~LreL-~~~p~Nk~CaDCGa~nP~WaSvn~GIFIC~~CSG 44 (364)
.++.++++ ......-.|.-||... ---+..||+.|..|.-
T Consensus 46 lRK~vkkiE~~q~akytCPfCGk~~--vKR~avGIW~C~~Cgk 86 (116)
T 3cc2_Z 46 SRRRVAEIESEMNEDHACPNCGEDR--VDRQGTGIWQCSYCDY 86 (116)
T ss_dssp HHHHHHHHHHHHHSCEECSSSCCEE--EEEEETTEEEETTTCC
T ss_pred HHHHHHHHHHHhccCCcCCCCCCce--eEecCceeEECCCCCC
Confidence 46677776 7777888999999743 3345569999999954
No 30
>3g9m_A Glucocorticoid receptor; glucocorticoid, DNA-binding, allostery, lever ARM, transcription, hormone; HET: DNA; 1.61A {Rattus norvegicus} SCOP: g.39.1.2 PDB: 3g6p_A* 3g6q_B* 3g6r_B* 3g6u_A* 3g8u_A* 3g8x_A* 3g97_B* 3g99_A* 3g9i_A* 3g9j_A* 3fyl_A* 3g9o_B* 3g9p_B* 3g6t_A* 1r4o_A 1r4r_A 1glu_A* 1gdc_A 2gda_A 1rgd_A ...
Probab=45.77 E-value=12 Score=29.70 Aligned_cols=30 Identities=27% Similarity=0.779 Sum_probs=24.1
Q ss_pred CCCCccCCCCCCCCceEeccceeeehhhhhhhc
Q 017907 15 GNKICVDCAQKNPQWASVSYGVFMCLECSGKHR 47 (364)
Q Consensus 15 ~Nk~CaDCGa~nP~WaSvn~GIFIC~~CSGiHR 47 (364)
+++.|.-|+.+.. ...|||+.|..|.++-|
T Consensus 1 g~~~C~VCg~~a~---g~hyGv~sC~~Ck~FFR 30 (90)
T 3g9m_A 1 GSHMCLVCSDEAS---GCHYGVLTCGSCKVFFK 30 (90)
T ss_dssp -CCBCTTTCSBCC---EEETTEEECHHHHHHHH
T ss_pred CCCcCccCCCcCc---ccccCCccchhHhHHhh
Confidence 4678999997643 46899999999999766
No 31
>1hcq_A Protein (estrogen receptor); protein-DNA complex, complexed with drug, transcription/DNA complex; HET: DNA; 2.40A {Homo sapiens} SCOP: g.39.1.2 PDB: 1hcp_A 4aa6_A
Probab=45.64 E-value=13 Score=29.15 Aligned_cols=31 Identities=23% Similarity=0.627 Sum_probs=25.8
Q ss_pred CCCCCccCCCCCCCCceEeccceeeehhhhhhhc
Q 017907 14 PGNKICVDCAQKNPQWASVSYGVFMCLECSGKHR 47 (364)
Q Consensus 14 p~Nk~CaDCGa~nP~WaSvn~GIFIC~~CSGiHR 47 (364)
++...|.-|+.+.. ...||++.|..|+++.|
T Consensus 2 ~~~~~C~VCg~~a~---g~hyGv~sC~aCk~FFR 32 (84)
T 1hcq_A 2 KETRYCAVCNDYAS---GYHYGVWSCEGCKAFFK 32 (84)
T ss_dssp CCCCBCTTTCSBCC---EEETTEEECHHHHHHHH
T ss_pred CCCCcCcEECCCCC---CeeeCccchHHhhhhhh
Confidence 45678999997643 67999999999999887
No 32
>2a66_A Orphan nuclear receptor NR5A2; protein-DNA complex, zinc finger, DNA- binding domain, transcription factor, FTZ-F1, C-terminal extension; 2.20A {Homo sapiens} PDB: 2ff0_A
Probab=42.65 E-value=11 Score=31.27 Aligned_cols=34 Identities=24% Similarity=0.646 Sum_probs=23.9
Q ss_pred hcCCCCCCccCCCCCCCCceEeccceeeehhhhhhhc
Q 017907 11 QSQPGNKICVDCAQKNPQWASVSYGVFMCLECSGKHR 47 (364)
Q Consensus 11 ~~~p~Nk~CaDCGa~nP~WaSvn~GIFIC~~CSGiHR 47 (364)
-..+....|.-||.+. ....|||+.|..|+++.|
T Consensus 4 ~~~~~~~~C~VCgd~a---~G~HyGv~sC~aCk~FFR 37 (113)
T 2a66_A 4 GDEDLEELCPVCGDKV---SGYHYGLLTCESCKGFFK 37 (113)
T ss_dssp ------CBCTTTCCBE---EEEETTEEEEHHHHHHHH
T ss_pred CCCCCCCCCcEeCCCC---cceeeCcccHHHHHHHHh
Confidence 3455678899999653 267999999999999877
No 33
>1r4i_A Androgen receptor; AR, steroid receptor, protein-DNA complex, transcription/DNA complex; 3.10A {Rattus norvegicus} SCOP: g.39.1.2
Probab=42.21 E-value=13 Score=30.50 Aligned_cols=32 Identities=25% Similarity=0.648 Sum_probs=25.3
Q ss_pred CCCCCCccCCCCCCCCceEeccceeeehhhhhhhc
Q 017907 13 QPGNKICVDCAQKNPQWASVSYGVFMCLECSGKHR 47 (364)
Q Consensus 13 ~p~Nk~CaDCGa~nP~WaSvn~GIFIC~~CSGiHR 47 (364)
.|....|.-||.+. ....||++.|..|+++.|
T Consensus 4 ~~~~~~C~VCg~~a---~g~hyGv~sC~aCk~FFR 35 (105)
T 1r4i_A 4 FPPQKTCLICGDEA---SGAHYGALTCGSCKVFFK 35 (105)
T ss_dssp --CCCBCSSSCSBE---EEEETTEEEEHHHHHHHH
T ss_pred CCCCCCCcEeCCCC---CceEeCCcchhhhhhhhc
Confidence 35678899999743 367899999999999887
No 34
>2han_B Ecdysone receptor; transcription regulation, transcription factor, DNA-binding, nuclear protein, nuclear receptor, zinc finger; 1.95A {Drosophila melanogaster} SCOP: g.39.1.2 PDB: 1r0o_B 1r0n_B
Probab=39.92 E-value=18 Score=30.17 Aligned_cols=30 Identities=23% Similarity=0.736 Sum_probs=25.2
Q ss_pred CCCCccCCCCCCCCceEeccceeeehhhhhhhc
Q 017907 15 GNKICVDCAQKNPQWASVSYGVFMCLECSGKHR 47 (364)
Q Consensus 15 ~Nk~CaDCGa~nP~WaSvn~GIFIC~~CSGiHR 47 (364)
....|.-||.+.- ...|||+.|..|+++.|
T Consensus 7 ~~~~C~VCg~~a~---g~hyGv~sC~aCk~FFR 36 (119)
T 2han_B 7 QEELCLVCGDRAS---GYHYNALTCEGCKGFFR 36 (119)
T ss_dssp CSCBCTTTCSBCC---EEETTEEECHHHHHHHH
T ss_pred CCCcCeEeCCcCC---cceECchhHHhhHHhhh
Confidence 4678999997643 67999999999999877
No 35
>2ebl_A COUP transcription factor 1; DNA-binding, metal-binding, nuclear protein, receptor, transcription regulation, zinc, EAR3, erbal3 tfcoup1; NMR {Homo sapiens}
Probab=39.92 E-value=14 Score=29.41 Aligned_cols=32 Identities=28% Similarity=0.644 Sum_probs=26.2
Q ss_pred CCCCCCccCCCCCCCCceEeccceeeehhhhhhhc
Q 017907 13 QPGNKICVDCAQKNPQWASVSYGVFMCLECSGKHR 47 (364)
Q Consensus 13 ~p~Nk~CaDCGa~nP~WaSvn~GIFIC~~CSGiHR 47 (364)
.+.+..|.-|+.+.. ...||++.|..|+++.|
T Consensus 4 ~~~~~~C~VCg~~a~---g~hyGv~sC~aCk~FFR 35 (89)
T 2ebl_A 4 GSSGIECVVCGDKSS---GKHYGQFTCEGCKSFFK 35 (89)
T ss_dssp CCSSCBCTTTCSBCC---SEETTEECCHHHHHHHH
T ss_pred CCCCCCCcEeCCCCc---ceEeCchhhHHhhhhhh
Confidence 355678999997644 46899999999999887
No 36
>1d4u_A Nucleotide excision repair protein XPA (XPA-MBD); DNA repair, loop-rich domain, relaxation, DNA binding protein; NMR {Homo sapiens} SCOP: a.6.1.2 g.39.1.5 PDB: 1xpa_A
Probab=39.67 E-value=7.1 Score=32.56 Aligned_cols=32 Identities=16% Similarity=0.480 Sum_probs=24.0
Q ss_pred CCCCccCCCCCCCC-ceEeccceeeehhhhhhh
Q 017907 15 GNKICVDCAQKNPQ-WASVSYGVFMCLECSGKH 46 (364)
Q Consensus 15 ~Nk~CaDCGa~nP~-WaSvn~GIFIC~~CSGiH 46 (364)
+...|.+||...-. +..-+|++-||..|....
T Consensus 4 ~~~~C~eC~~~~~d~~l~~~F~~~VC~~Cr~~~ 36 (111)
T 1d4u_A 4 DYVICEECGKEFMDSYLMDHFDLPTCDDCRDAD 36 (111)
T ss_dssp CCEECTTTCCEESCSSSTTTTSCCCCTTTCSSS
T ss_pred CCCccccCCChhhHHHHHHhCCeeechhhcccc
Confidence 45689999986333 335689999999998653
No 37
>3j21_i 50S ribosomal protein L37AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=37.69 E-value=21 Score=28.34 Aligned_cols=40 Identities=23% Similarity=0.579 Sum_probs=28.7
Q ss_pred HHHHHHHH-hcCCCCCCccCCCCCCCCceEeccceeeehhhhh
Q 017907 3 ATRRLRDL-QSQPGNKICVDCAQKNPQWASVSYGVFMCLECSG 44 (364)
Q Consensus 3 a~r~LreL-~~~p~Nk~CaDCGa~nP~WaSvn~GIFIC~~CSG 44 (364)
.++.++++ ..+...-.|.-||.....- +..|||-|..|.-
T Consensus 21 lRK~vkkie~~q~~ky~CpfCGk~~vkR--~a~GIW~C~kCg~ 61 (83)
T 3j21_i 21 IRRRVAAVEAKMRQKHTCPVCGRKAVKR--ISTGIWQCQKCGA 61 (83)
T ss_dssp HHHHHHHHHHHHHSCBCCSSSCSSCEEE--EETTEEEETTTCC
T ss_pred HHHHHHHHHHHhhcccCCCCCCCceeEe--cCcCeEEcCCCCC
Confidence 35555554 4556677899999885444 5679999999943
No 38
>2han_A Protein ultraspiracle; transcription regulation, transcription factor, DNA-binding, nuclear protein, nuclear receptor, zinc finger; 1.95A {Drosophila melanogaster} SCOP: g.39.1.2
Probab=37.34 E-value=19 Score=28.81 Aligned_cols=30 Identities=27% Similarity=0.804 Sum_probs=24.6
Q ss_pred CCCCccCCCCCCCCceEeccceeeehhhhhhhc
Q 017907 15 GNKICVDCAQKNPQWASVSYGVFMCLECSGKHR 47 (364)
Q Consensus 15 ~Nk~CaDCGa~nP~WaSvn~GIFIC~~CSGiHR 47 (364)
....|.-||.+.. ...||++.|..|+++.|
T Consensus 9 ~~~~C~VCgd~a~---g~hyGv~sC~aCk~FFR 38 (93)
T 2han_A 9 SKHLCSICGDRAS---GKHYGVYSCEGCKGFFK 38 (93)
T ss_dssp -CCBCTTTCSBCC---EEETTEEECHHHHHHHH
T ss_pred CCCCCcEeCCCCc---CeecCcchhHHHHHHHH
Confidence 3578999997643 67999999999999877
No 39
>2nll_B Protein (thyroid hormone receptor); complex (transcription regulation/DNA), DNA-binding, nuclear protein, zinc- finger, multigene family; HET: DNA 5IU; 1.90A {Homo sapiens} SCOP: g.39.1.2 PDB: 3m9e_A*
Probab=35.44 E-value=15 Score=29.94 Aligned_cols=28 Identities=32% Similarity=0.781 Sum_probs=23.2
Q ss_pred CCccCCCCCCCCceEeccceeeehhhhhhhc
Q 017907 17 KICVDCAQKNPQWASVSYGVFMCLECSGKHR 47 (364)
Q Consensus 17 k~CaDCGa~nP~WaSvn~GIFIC~~CSGiHR 47 (364)
..|.-||.+.. ...|||+.|..|+++.|
T Consensus 2 ~~C~VCgd~a~---g~hyGv~sC~aCk~FFR 29 (103)
T 2nll_B 2 ELCVVCGDKAT---GYHYRCITCEGCKGFFR 29 (103)
T ss_dssp CBCTTTCSBCC---SEETTEECCHHHHHHHH
T ss_pred CCCeEeCCcCc---CeecCcccHHHhhhhhe
Confidence 57999997543 46899999999999877
No 40
>1cit_A NGFI-B, protein (orphan nuclear receptor NGFI-B); early immediate response gene product, transcription factor, monomeric protein-DNA complex; HET: DNA; 2.70A {Rattus norvegicus} SCOP: g.39.1.2
Probab=33.38 E-value=26 Score=27.74 Aligned_cols=27 Identities=30% Similarity=0.715 Sum_probs=22.4
Q ss_pred CccCCCCCCCCceEeccceeeehhhhhhhc
Q 017907 18 ICVDCAQKNPQWASVSYGVFMCLECSGKHR 47 (364)
Q Consensus 18 ~CaDCGa~nP~WaSvn~GIFIC~~CSGiHR 47 (364)
.|.-||.+.. ...||++.|..|+++.|
T Consensus 2 ~C~VCg~~a~---g~hyGv~sC~aCk~FFR 28 (89)
T 1cit_A 2 RCAVCGDNAS---CQHYGVRTCEGCKGFFK 28 (89)
T ss_dssp CCSSSCCCCC---EEETTEEECHHHHHHHH
T ss_pred CCeEeCCCCc---ceEeCccchhhhhhhce
Confidence 5888987543 57899999999999877
No 41
>3izc_m 60S ribosomal protein RPL43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_m 3o58_g 3o5h_g 3u5e_p 3u5i_p 4b6a_p 1s1i_9
Probab=33.19 E-value=25 Score=28.48 Aligned_cols=39 Identities=23% Similarity=0.481 Sum_probs=28.1
Q ss_pred HHHHHHHH-hcCCCCCCccCCCCCCCCceEeccceeeehhhh
Q 017907 3 ATRRLRDL-QSQPGNKICVDCAQKNPQWASVSYGVFMCLECS 43 (364)
Q Consensus 3 a~r~LreL-~~~p~Nk~CaDCGa~nP~WaSvn~GIFIC~~CS 43 (364)
.++.++++ ..+...-.|.-||.....- +..|||-|..|.
T Consensus 22 lRK~vkkie~~q~~ky~CpfCgk~~vkR--~a~GIW~C~~C~ 61 (92)
T 3izc_m 22 LRRQVKKLEIQQHARYDCSFCGKKTVKR--GAAGIWTCSCCK 61 (92)
T ss_dssp HHHHHHHHHHHHHSCCCCSSSCSSCCEE--EETTEEECTTTC
T ss_pred HHHHHHHHHHHHhcCCcCCCCCCceeee--cccceEEcCCCC
Confidence 34555554 4556677899999876554 457999999994
No 42
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=32.85 E-value=25 Score=25.67 Aligned_cols=28 Identities=18% Similarity=0.259 Sum_probs=20.3
Q ss_pred CCccCCCCCCCCceEeccceeeehhhhhh
Q 017907 17 KICVDCAQKNPQWASVSYGVFMCLECSGK 45 (364)
Q Consensus 17 k~CaDCGa~nP~WaSvn~GIFIC~~CSGi 45 (364)
..|.+|+.....+ ...-|..||..|.-+
T Consensus 12 ~~Cp~C~~~~lv~-D~~~ge~vC~~CGlV 39 (58)
T 1dl6_A 12 VTCPNHPDAILVE-DYRAGDMICPECGLV 39 (58)
T ss_dssp CSBTTBSSSCCEE-CSSSCCEECTTTCCE
T ss_pred ccCcCCCCCceeE-eCCCCeEEeCCCCCE
Confidence 4799999865322 346689999999554
No 43
>1a6y_A Orphan nuclear receptor NR1D1; orphan receptor, DNA-binding, reverb, REV- ERB, transcription regulation, transcription/DNA complex; HET: DNA 5IU; 2.30A {Homo sapiens} SCOP: g.39.1.2 PDB: 1ga5_A* 1hlz_A
Probab=31.85 E-value=22 Score=28.43 Aligned_cols=30 Identities=30% Similarity=0.667 Sum_probs=23.8
Q ss_pred CCCCccCCCCCCCCceEeccceeeehhhhhhhc
Q 017907 15 GNKICVDCAQKNPQWASVSYGVFMCLECSGKHR 47 (364)
Q Consensus 15 ~Nk~CaDCGa~nP~WaSvn~GIFIC~~CSGiHR 47 (364)
....|.-||.+.. ...||++.|..|.++.|
T Consensus 6 ~~~~C~VCg~~a~---g~hyGv~sC~aCk~FFR 35 (94)
T 1a6y_A 6 MVLLCKVCGDVAS---GFHYGVLACEGCKGFFR 35 (94)
T ss_dssp --CBCTTTSSBCC---EEETTEEECHHHHHHHH
T ss_pred CCCcCcEeCCCCc---ceEeCccchhhhhhehh
Confidence 3467999997543 67899999999999877
No 44
>1dsz_A RAR-alpha, retinoic acid receptor alpha; RAR, nuclear receptor, protein-DNA, transcription/DNA complex; HET: DNA; 1.70A {Homo sapiens} SCOP: g.39.1.2 PDB: 1hra_A
Probab=30.42 E-value=21 Score=28.09 Aligned_cols=28 Identities=39% Similarity=0.795 Sum_probs=22.8
Q ss_pred CCccCCCCCCCCceEeccceeeehhhhhhhc
Q 017907 17 KICVDCAQKNPQWASVSYGVFMCLECSGKHR 47 (364)
Q Consensus 17 k~CaDCGa~nP~WaSvn~GIFIC~~CSGiHR 47 (364)
..|.-||.+.. ...||++.|..|+++.|
T Consensus 5 ~~C~VCg~~a~---g~hyGv~sC~aCk~FFR 32 (86)
T 1dsz_A 5 KPCFVCQDKSS---GYHYGVSACEGCKGFFR 32 (86)
T ss_dssp -CCTTTCSCCC---SEETTEECCHHHHHHHH
T ss_pred CCCcEECCCcc---ceeeCchhHHHHHHHHH
Confidence 46999997653 46899999999999887
No 45
>1ynw_B Retinoic acid receptor RXR-alpha, retinoid X receptor; VDR, nuclear receptor, protein-DNA complex, transcripti complex; 3.00A {Homo sapiens} SCOP: g.39.1.2
Probab=29.76 E-value=19 Score=29.10 Aligned_cols=30 Identities=30% Similarity=0.828 Sum_probs=23.2
Q ss_pred CCCccCCCCCCCCceEeccceeeehhhhhhhcc
Q 017907 16 NKICVDCAQKNPQWASVSYGVFMCLECSGKHRG 48 (364)
Q Consensus 16 Nk~CaDCGa~nP~WaSvn~GIFIC~~CSGiHR~ 48 (364)
...|.-||.+.. ...||++.|..|+++.|-
T Consensus 3 ~~~C~VCg~~a~---g~hyGv~sC~aCk~FFRR 32 (99)
T 1ynw_B 3 KHICAICGDRSS---GKHYGVYSCEGCKGFFKR 32 (99)
T ss_dssp --CBTTTBSCCC---BCCTTSCBCSHHHHHHHH
T ss_pred CCCCceeCCCCc---ceeeCccchHHHHHHHHh
Confidence 357999997543 468999999999998873
No 46
>3dzy_D Peroxisome proliferator-activated receptor gamma; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_D* 3e00_D* 2env_A
Probab=29.46 E-value=24 Score=34.82 Aligned_cols=30 Identities=33% Similarity=0.639 Sum_probs=24.2
Q ss_pred CCCCccCCCCCCCCceEeccceeeehhhhhhhc
Q 017907 15 GNKICVDCAQKNPQWASVSYGVFMCLECSGKHR 47 (364)
Q Consensus 15 ~Nk~CaDCGa~nP~WaSvn~GIFIC~~CSGiHR 47 (364)
.+..|.-||.+.-- ..|||+.|..|.++.|
T Consensus 49 ~~~~C~vC~~~~~g---~hygv~~C~~C~~FFr 78 (419)
T 3dzy_D 49 MAIECRVCGDKASG---FHYGVHACEGCKGFFR 78 (419)
T ss_dssp -CCCCSSSCSCCCS---BCSSSBCCHHHHHHHH
T ss_pred CCCcCeECCCcCCC---CccCcccchhhhHHHc
Confidence 36789999986543 5899999999999766
No 47
>3iz5_m 60S ribosomal protein L43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_m 1ysh_D 2zkr_z
Probab=29.24 E-value=26 Score=28.34 Aligned_cols=39 Identities=18% Similarity=0.507 Sum_probs=27.6
Q ss_pred HHHHHHHH-hcCCCCCCccCCCCCCCCceEeccceeeehhhh
Q 017907 3 ATRRLRDL-QSQPGNKICVDCAQKNPQWASVSYGVFMCLECS 43 (364)
Q Consensus 3 a~r~LreL-~~~p~Nk~CaDCGa~nP~WaSvn~GIFIC~~CS 43 (364)
.++.++++ ..+...-.|.-||.....- +..|||-|..|.
T Consensus 22 lRK~vkkie~~q~~ky~CpfCgk~~vkR--~a~GIW~C~~Cg 61 (92)
T 3iz5_m 22 LRKQIKKMEVSQHSKYFCEFCGKFAVKR--KAVGIWGCKDCG 61 (92)
T ss_dssp HHHHHHHHHHHHHSCBCCTTTCSSCBEE--EETTEEECSSSC
T ss_pred HHHHHHHHHHHHhccccCcccCCCeeEe--cCcceEEcCCCC
Confidence 34455554 4445567999999886544 567999999994
No 48
>1kb2_A Vitamin D3 receptor; VDR, nuclear receptor, protein-DNA complex, transcription/DNA complex; 2.70A {Homo sapiens} SCOP: g.39.1.2 PDB: 1kb4_A 1kb6_A 1ynw_A
Probab=29.11 E-value=21 Score=29.46 Aligned_cols=30 Identities=23% Similarity=0.639 Sum_probs=23.7
Q ss_pred CCCCccCCCCCCCCceEeccceeeehhhhhhhc
Q 017907 15 GNKICVDCAQKNPQWASVSYGVFMCLECSGKHR 47 (364)
Q Consensus 15 ~Nk~CaDCGa~nP~WaSvn~GIFIC~~CSGiHR 47 (364)
....|.-||.+.- ...||++.|..|+++.|
T Consensus 5 ~~~~C~VCg~~a~---g~hyGv~sC~aCk~FFR 34 (110)
T 1kb2_A 5 VPRICGVCGDRAT---GFHFNAMTCEGCKGFFR 34 (110)
T ss_dssp --CBCTTTCSBCC---SEETTEECCHHHHHHHH
T ss_pred cCCCCcEeCCCCC---ceEeCchhHhhhhhhhe
Confidence 3467999997643 46899999999999877
No 49
>1lo1_A Steroid hormone receptor ERR2; estrogen related receptor 2, DNA binding domain, HERR2, hormone nuclear receptor; NMR {Homo sapiens} SCOP: g.39.1.2
Probab=28.85 E-value=17 Score=29.39 Aligned_cols=29 Identities=24% Similarity=0.700 Sum_probs=24.1
Q ss_pred CCCccCCCCCCCCceEeccceeeehhhhhhhc
Q 017907 16 NKICVDCAQKNPQWASVSYGVFMCLECSGKHR 47 (364)
Q Consensus 16 Nk~CaDCGa~nP~WaSvn~GIFIC~~CSGiHR 47 (364)
...|.-||.+.. ...||++.|..|+++.|
T Consensus 4 ~~~C~VCg~~a~---g~hyGv~sC~aCk~FFR 32 (98)
T 1lo1_A 4 KRLCLVCGDIAS---GYHYGVASCEACKAFFK 32 (98)
T ss_dssp CCEETTTTEECS---EESSSSEECHHHHHHHH
T ss_pred CCCCcEeCCCCc---CeeeCccchhhhhhhhe
Confidence 467999997543 57899999999999887
No 50
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=28.59 E-value=27 Score=33.75 Aligned_cols=28 Identities=25% Similarity=0.522 Sum_probs=21.2
Q ss_pred CccCCCCCCCCc-eEeccceeeehhhhhh
Q 017907 18 ICVDCAQKNPQW-ASVSYGVFMCLECSGK 45 (364)
Q Consensus 18 ~CaDCGa~nP~W-aSvn~GIFIC~~CSGi 45 (364)
.|.+|+...|.- ....-|-.||.+|.-|
T Consensus 23 ~Cp~C~~~~~~lv~D~~~G~~vC~~CGlV 51 (345)
T 4bbr_M 23 TCPECKVYPPKIVERFSEGDVVCALCGLV 51 (345)
T ss_dssp CCSSCCCSSCCEEEEGGGTEEEETTTCBE
T ss_pred cCCCCCCCCCceeEECCCCcEEeCCCCCC
Confidence 799999854542 2457899999999643
No 51
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=28.18 E-value=12 Score=27.11 Aligned_cols=25 Identities=24% Similarity=0.687 Sum_probs=20.3
Q ss_pred CCCCccCCCCCCCCceEeccceeeehhhhhh
Q 017907 15 GNKICVDCAQKNPQWASVSYGVFMCLECSGK 45 (364)
Q Consensus 15 ~Nk~CaDCGa~nP~WaSvn~GIFIC~~CSGi 45 (364)
...+|..|++. +..|++-|..|...
T Consensus 13 ~k~iCpkC~a~------~~~gaw~CrKCG~~ 37 (51)
T 3j21_g 13 KKYVCLRCGAT------NPWGAKKCRKCGYK 37 (51)
T ss_dssp SEEECTTTCCE------ECTTCSSCSSSSSC
T ss_pred CCccCCCCCCc------CCCCceecCCCCCc
Confidence 56899999998 45799999999543
No 52
>2uzg_A Ubiquitin carboxyl-terminal hydrolase 33; UBL conjugation pathway, DE-ubiquitination, alternative splicing, metal-binding, thiol protease; NMR {Homo sapiens} SCOP: g.44.1.5
Probab=27.95 E-value=24 Score=28.18 Aligned_cols=28 Identities=29% Similarity=0.648 Sum_probs=20.5
Q ss_pred CCCCCccCCCCCCCC-ceEec--cceeeehh
Q 017907 14 PGNKICVDCAQKNPQ-WASVS--YGVFMCLE 41 (364)
Q Consensus 14 p~Nk~CaDCGa~nP~-WaSvn--~GIFIC~~ 41 (364)
|....|.+|++..+. |+++. -|-+-|-+
T Consensus 23 ~~~~~C~~C~~~~~~lw~CL~~~Cg~vgCgr 53 (97)
T 2uzg_A 23 KSLGTCQDCKVQGPNLWACLENRCSYVGCGE 53 (97)
T ss_dssp HTTTCCSSSCCCCSSCEEECCTTCCCEECCT
T ss_pred CCCCcCcCcCCCCCCceeeecccCCCcccCC
Confidence 356789999966655 88777 77777743
No 53
>3iz6_N 40S ribosomal protein S29 (S14P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 2zkq_n
Probab=26.85 E-value=33 Score=25.29 Aligned_cols=39 Identities=26% Similarity=0.699 Sum_probs=27.2
Q ss_pred CCCCCccCCCCCCCCceEeccceeeehhhhhhhccCCCccccee
Q 017907 14 PGNKICVDCAQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVR 57 (364)
Q Consensus 14 p~Nk~CaDCGa~nP~WaSvn~GIFIC~~CSGiHR~LG~hiS~VK 57 (364)
++-+.|.-||.+.- .-=.||+.||-.|- |++-..|-|||
T Consensus 16 ~g~~rC~vcGr~~g--~iRkfGL~~cR~cf---Re~A~~iGF~k 54 (56)
T 3iz6_N 16 AGSRVCRVCGNSHG--LIRKYGLMCCRQCF---RSDAKDIGFIK 54 (56)
T ss_dssp CCCCCCSSCCCSCC--CTTTTSCTTHHHHH---HTTCCSTTCCS
T ss_pred CCcceeecCCCCcc--cccccCCcHHHHHH---HHHHHhcCcee
Confidence 45689999998643 22379999999884 55555666665
No 54
>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=26.23 E-value=16 Score=28.40 Aligned_cols=38 Identities=24% Similarity=0.504 Sum_probs=26.5
Q ss_pred HHHHHHH-hcCCCCCCccCCCCCCCCceEeccceeeehhhh
Q 017907 4 TRRLRDL-QSQPGNKICVDCAQKNPQWASVSYGVFMCLECS 43 (364)
Q Consensus 4 ~r~LreL-~~~p~Nk~CaDCGa~nP~WaSvn~GIFIC~~CS 43 (364)
+++++++ ..+...-.|.-||.....- +..||+-|..|.
T Consensus 13 RK~vkkie~~q~~ky~C~fCgk~~vkR--~a~GIW~C~~C~ 51 (72)
T 3jyw_9 13 RRQVKKLEIQQHARYDCSFCGKKTVKR--GAAGIWTCSCCK 51 (72)
T ss_dssp HTTTHHHHHHHHSCBCCSSCCSSCBSB--CSSSCBCCSSSC
T ss_pred HHHHHHHHHHhccCccCCCCCCceeEe--cCCCeEECCCCC
Confidence 3344443 4445667899999876554 457999999994
No 55
>4hn5_A Glucocorticoid receptor; glucocorticoid receptor, steroid receptors, NGRE, repre transcription; HET: DNA; 1.90A {Homo sapiens} PDB: 4hn6_A*
Probab=26.22 E-value=34 Score=28.52 Aligned_cols=33 Identities=27% Similarity=0.669 Sum_probs=23.6
Q ss_pred cCCCCCCccCCCCCCCCceEeccceeeehhhhhhhc
Q 017907 12 SQPGNKICVDCAQKNPQWASVSYGVFMCLECSGKHR 47 (364)
Q Consensus 12 ~~p~Nk~CaDCGa~nP~WaSvn~GIFIC~~CSGiHR 47 (364)
..+..+.|.-||.+.- ...|||+.|..|.++-|
T Consensus 25 ~~~~~~~C~VCgd~a~---G~HyGv~sC~aCk~FFR 57 (117)
T 4hn5_A 25 SNAPPKLCLVCSDEAS---GCHYGVLTCGSCKVFFK 57 (117)
T ss_dssp -----CBCTTTCSBCC---EEETTEEECHHHHHHHH
T ss_pred CCCCCCcCCcCCCcCc---ccccCCcccchhhhhhh
Confidence 3345678999997643 56899999999999765
No 56
>1dsz_B RXR-alpha, retinoic acid receptor RXR-alpha; RAR, nuclear receptor, protein-DNA, transcription/DNA complex; HET: DNA; 1.70A {Homo sapiens} SCOP: g.39.1.2 PDB: 1by4_A* 1rxr_A 1r0n_A 1r0o_A 2nll_A*
Probab=25.40 E-value=18 Score=28.41 Aligned_cols=31 Identities=29% Similarity=0.789 Sum_probs=24.8
Q ss_pred CCCCccCCCCCCCCceEeccceeeehhhhhhhcc
Q 017907 15 GNKICVDCAQKNPQWASVSYGVFMCLECSGKHRG 48 (364)
Q Consensus 15 ~Nk~CaDCGa~nP~WaSvn~GIFIC~~CSGiHR~ 48 (364)
....|.-||.+.. ...||++.|..|+++.|-
T Consensus 4 ~~~~C~VCg~~a~---g~hyGv~sC~aCk~FFRR 34 (85)
T 1dsz_B 4 TKHICAICGDRSS---GKHYGVYSCEGCKGFFKR 34 (85)
T ss_dssp CCEECTTTCCEES---SEETTEECCHHHHHHHHH
T ss_pred CCCCCCEeCCCCC---ceeeCccchHHHHHHHHH
Confidence 4568999997543 458999999999998873
No 57
>3cbb_A HNF-4-alpha, hepatocyte nuclear factor 4-alpha, DNA binding domain, nuclear; zinc finger; 2.00A {Homo sapiens}
Probab=22.66 E-value=31 Score=26.61 Aligned_cols=27 Identities=30% Similarity=0.753 Sum_probs=22.0
Q ss_pred CccCCCCCCCCceEeccceeeehhhhhhhc
Q 017907 18 ICVDCAQKNPQWASVSYGVFMCLECSGKHR 47 (364)
Q Consensus 18 ~CaDCGa~nP~WaSvn~GIFIC~~CSGiHR 47 (364)
.|.-||.+.. ...||++.|..|+++.|
T Consensus 2 ~C~VCg~~a~---g~hyGv~sC~aCk~FFR 28 (78)
T 3cbb_A 2 LCAICGDRAT---GKHYGASSCDGCKGFFR 28 (78)
T ss_dssp BCTTTSSBCC---SEETTEECCHHHHHHHH
T ss_pred CCeEeCCCCC---ceEeCCcchhhhceeee
Confidence 4888886543 46899999999999877
No 58
>4a17_Y RPL37A, 60S ribosomal protein L32; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_Y 4a1c_Y 4a1e_Y
Probab=21.89 E-value=23 Score=29.33 Aligned_cols=40 Identities=15% Similarity=0.404 Sum_probs=28.0
Q ss_pred HHHHHHHH-hcCCCCCCccCCCCCCCCceEeccceeeehhhhh
Q 017907 3 ATRRLRDL-QSQPGNKICVDCAQKNPQWASVSYGVFMCLECSG 44 (364)
Q Consensus 3 a~r~LreL-~~~p~Nk~CaDCGa~nP~WaSvn~GIFIC~~CSG 44 (364)
.++.++++ ..+...-.|.-||.....- +..|||-|..|.-
T Consensus 22 lRK~vkkIE~~q~aky~CpfCgk~~vKR--~a~GIW~C~kCg~ 62 (103)
T 4a17_Y 22 LRKVVKKFEITQHAKYGCPFCGKVAVKR--AAVGIWKCKPCKK 62 (103)
T ss_dssp HHHHHHHHHHHHHSCEECTTTCCEEEEE--EETTEEEETTTTE
T ss_pred HHHHHHHHHHHhhcCCCCCCCCCceeee--cCcceEEcCCCCC
Confidence 34555554 4555667899999875443 4579999999943
No 59
>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A*
Probab=20.64 E-value=25 Score=35.26 Aligned_cols=30 Identities=30% Similarity=0.811 Sum_probs=23.7
Q ss_pred CCCCccCCCCCCCCceEeccceeeehhhhhhhc
Q 017907 15 GNKICVDCAQKNPQWASVSYGVFMCLECSGKHR 47 (364)
Q Consensus 15 ~Nk~CaDCGa~nP~WaSvn~GIFIC~~CSGiHR 47 (364)
.++.|.-||.+.-- ..|||..|..|.++.|
T Consensus 136 ~~~~C~VCg~~a~g---~hygv~sC~~Ck~FFr 165 (467)
T 3dzy_A 136 TKHICAICGDRSSG---KHYGVYSCEGCKGFFK 165 (467)
T ss_dssp -CEECTTTSSEECS---EETTEECCHHHHHHHH
T ss_pred CCCcceeCCCCCCC---CcCCCcchhhhhHhcc
Confidence 35579999986443 5899999999999776
No 60
>3j21_d 50S ribosomal protein L34E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=20.55 E-value=31 Score=27.74 Aligned_cols=30 Identities=20% Similarity=0.511 Sum_probs=19.9
Q ss_pred CCCCCccCCCCC-------CCC----------ceEeccceeeehhhhh
Q 017907 14 PGNKICVDCAQK-------NPQ----------WASVSYGVFMCLECSG 44 (364)
Q Consensus 14 p~Nk~CaDCGa~-------nP~----------WaSvn~GIFIC~~CSG 44 (364)
+.--.|.|||.+ -|. -++=.|| .+|..|..
T Consensus 31 ~~~pkC~~cg~~L~Gi~~~Rp~~~~rlsK~~KtvsRaYG-~lC~~Cvr 77 (89)
T 3j21_d 31 PKIAHCAMCGRPLNGIPRGRPVEMRKLPKTKKRPERPMP-HLCPRCMR 77 (89)
T ss_dssp CCCCBCSSSCCBCTTCCCCCTTGGGGSCHHHHCCSSSCT-TSCHHHHH
T ss_pred CCCCCCCCCCCccCCccCccHHHHHhcccCCCCcCCCcc-cchHHHHH
Confidence 333479999974 121 2345699 99999964
No 61
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae}
Probab=20.49 E-value=56 Score=29.68 Aligned_cols=28 Identities=25% Similarity=0.523 Sum_probs=21.3
Q ss_pred CccCCCCCCCCce-Eeccceeeehhhhhh
Q 017907 18 ICVDCAQKNPQWA-SVSYGVFMCLECSGK 45 (364)
Q Consensus 18 ~CaDCGa~nP~Wa-Svn~GIFIC~~CSGi 45 (364)
.|-+|+...+.-+ ...-|-.||.+|.-|
T Consensus 23 ~CPECGs~~t~IV~D~erGE~VCsdCGLV 51 (197)
T 3k1f_M 23 TCPECKVYPPKIVERFSEGDVVCALCGLV 51 (197)
T ss_dssp CCTTTCCSSCCEEEEGGGTEEEETTTCBB
T ss_pred ECcCCCCcCCeEEEeCCCCEEEEcCCCCC
Confidence 7999998544433 357899999999654
Done!