Query 017908
Match_columns 364
No_of_seqs 242 out of 1077
Neff 4.7
Searched_HMMs 46136
Date Fri Mar 29 04:28:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017908.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017908hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0627 Heat shock transcripti 100.0 3.7E-44 8.1E-49 346.2 9.6 180 5-184 5-190 (304)
2 PF00447 HSF_DNA-bind: HSF-typ 100.0 3.6E-35 7.9E-40 243.4 5.3 93 14-106 1-102 (103)
3 smart00415 HSF heat shock fact 100.0 7.7E-35 1.7E-39 243.3 6.5 94 11-104 1-105 (105)
4 COG5169 HSF1 Heat shock transc 100.0 5.5E-33 1.2E-37 267.9 7.9 104 6-109 4-117 (282)
5 PF00178 Ets: Ets-domain; Int 95.8 0.0042 9.1E-08 51.0 1.5 71 15-85 4-80 (85)
6 smart00413 ETS erythroblast tr 93.5 0.083 1.8E-06 43.8 3.5 58 17-74 6-65 (87)
7 KOG3806 Predicted transcriptio 90.1 0.43 9.2E-06 44.3 4.4 74 12-85 68-147 (177)
8 PF06005 DUF904: Protein of un 87.6 2.8 6E-05 33.5 6.9 41 133-173 23-70 (72)
9 TIGR02449 conserved hypothetic 83.1 5.2 0.00011 31.6 6.4 42 136-177 15-63 (65)
10 PF02183 HALZ: Homeobox associ 81.1 7 0.00015 28.5 6.0 40 133-172 3-42 (45)
11 COG3074 Uncharacterized protei 75.5 19 0.00042 29.1 7.4 38 133-170 23-60 (79)
12 PF12325 TMF_TATA_bd: TATA ele 71.2 25 0.00055 30.7 7.9 52 132-183 34-88 (120)
13 PF02183 HALZ: Homeobox associ 70.6 12 0.00027 27.3 4.9 34 133-166 10-43 (45)
14 TIGR03752 conj_TIGR03752 integ 67.5 18 0.00038 38.5 7.3 39 132-170 70-108 (472)
15 TIGR02449 conserved hypothetic 66.9 48 0.001 26.2 7.9 53 132-184 4-56 (65)
16 PRK15422 septal ring assembly 66.1 38 0.00083 27.8 7.4 24 133-156 23-46 (79)
17 PF04340 DUF484: Protein of un 65.4 11 0.00025 35.2 5.0 65 86-169 17-84 (225)
18 TIGR02894 DNA_bind_RsfA transc 61.1 38 0.00083 31.2 7.3 46 138-183 100-145 (161)
19 KOG4360 Uncharacterized coiled 59.7 30 0.00066 37.3 7.3 50 135-184 226-275 (596)
20 PRK00295 hypothetical protein; 59.6 54 0.0012 25.8 7.0 43 133-175 10-52 (68)
21 PF10226 DUF2216: Uncharacteri 56.6 1.5E+02 0.0032 28.2 10.5 50 135-184 55-129 (195)
22 PF00170 bZIP_1: bZIP transcri 56.2 40 0.00088 25.5 5.7 31 133-163 31-61 (64)
23 PF10473 CENP-F_leu_zip: Leuci 55.7 59 0.0013 29.2 7.5 49 132-180 56-104 (140)
24 PRK00736 hypothetical protein; 55.3 63 0.0014 25.4 6.8 42 133-174 10-51 (68)
25 PF03310 Cauli_DNA-bind: Cauli 54.9 24 0.00052 31.1 4.8 39 146-184 3-41 (121)
26 PRK04325 hypothetical protein; 54.4 62 0.0013 25.8 6.7 44 132-175 13-56 (74)
27 PRK10803 tol-pal system protei 54.4 30 0.00066 33.6 5.9 34 139-172 58-91 (263)
28 COG5481 Uncharacterized conser 54.0 44 0.00095 26.3 5.5 34 145-178 7-46 (67)
29 PRK10963 hypothetical protein; 53.8 37 0.00081 32.1 6.3 65 86-169 14-81 (223)
30 PF04102 SlyX: SlyX; InterPro 53.6 56 0.0012 25.5 6.3 44 133-176 9-52 (69)
31 PRK15422 septal ring assembly 53.3 47 0.001 27.3 5.9 40 133-172 37-76 (79)
32 PRK00846 hypothetical protein; 53.2 69 0.0015 26.1 6.8 44 133-176 18-61 (77)
33 PRK04406 hypothetical protein; 53.0 65 0.0014 25.9 6.6 43 132-174 15-57 (75)
34 KOG4005 Transcription factor X 52.8 55 0.0012 32.3 7.3 52 132-183 94-150 (292)
35 PF04111 APG6: Autophagy prote 52.7 68 0.0015 32.1 8.2 37 133-169 48-84 (314)
36 PF11932 DUF3450: Protein of u 52.3 64 0.0014 30.8 7.7 17 140-156 54-70 (251)
37 PF08581 Tup_N: Tup N-terminal 52.0 1.3E+02 0.0028 24.5 8.3 49 134-182 3-58 (79)
38 smart00338 BRLZ basic region l 51.6 44 0.00096 25.3 5.3 33 132-164 30-62 (65)
39 TIGR02894 DNA_bind_RsfA transc 50.8 72 0.0016 29.5 7.3 42 132-173 108-149 (161)
40 PRK02793 phi X174 lysis protei 50.0 80 0.0017 25.0 6.7 44 132-175 12-55 (72)
41 PF10168 Nup88: Nuclear pore c 49.3 63 0.0014 36.1 8.0 53 132-184 562-614 (717)
42 PF11932 DUF3450: Protein of u 47.9 93 0.002 29.7 8.1 49 132-180 53-101 (251)
43 PRK00888 ftsB cell division pr 47.8 83 0.0018 26.6 6.9 48 136-183 28-75 (105)
44 PRK02119 hypothetical protein; 47.5 91 0.002 24.8 6.7 42 133-174 14-55 (73)
45 TIGR03752 conj_TIGR03752 integ 47.4 49 0.0011 35.3 6.5 11 267-277 253-263 (472)
46 COG3074 Uncharacterized protei 46.8 1.4E+02 0.0031 24.2 7.6 11 146-156 22-32 (79)
47 KOG0977 Nuclear envelope prote 46.6 54 0.0012 35.6 6.8 46 132-177 166-218 (546)
48 PRK10803 tol-pal system protei 46.6 80 0.0017 30.7 7.5 51 133-183 38-95 (263)
49 PF06005 DUF904: Protein of un 46.2 1.5E+02 0.0033 23.6 8.2 38 133-170 9-46 (72)
50 PF07407 Seadorna_VP6: Seadorn 45.0 63 0.0014 33.3 6.6 27 130-156 34-60 (420)
51 PF14282 FlxA: FlxA-like prote 43.3 1.5E+02 0.0032 25.1 7.7 44 134-177 18-72 (106)
52 PF04201 TPD52: Tumour protein 42.9 79 0.0017 29.2 6.4 39 134-172 28-66 (162)
53 PF11414 Suppressor_APC: Adeno 42.2 1.1E+02 0.0024 25.2 6.5 39 132-170 4-42 (84)
54 KOG4196 bZIP transcription fac 41.6 92 0.002 28.0 6.3 32 138-169 77-108 (135)
55 PF12709 Kinetocho_Slk19: Cent 40.4 1.1E+02 0.0023 25.6 6.2 33 135-167 49-81 (87)
56 PRK13182 racA polar chromosome 39.9 1.8E+02 0.0038 27.0 8.2 20 162-181 124-143 (175)
57 PF10473 CENP-F_leu_zip: Leuci 39.4 1.7E+02 0.0037 26.3 7.8 51 132-182 70-120 (140)
58 PRK05431 seryl-tRNA synthetase 39.3 1.6E+02 0.0035 30.6 8.9 65 132-196 39-114 (425)
59 PF10779 XhlA: Haemolysin XhlA 39.0 1.9E+02 0.004 22.6 7.7 49 133-181 4-52 (71)
60 TIGR00219 mreC rod shape-deter 38.6 99 0.0021 30.5 6.8 25 136-160 67-91 (283)
61 PF09726 Macoilin: Transmembra 38.0 1.9E+02 0.0042 32.3 9.6 14 132-145 549-562 (697)
62 PRK14127 cell division protein 37.8 1.6E+02 0.0036 25.4 7.2 36 138-173 33-68 (109)
63 PRK10884 SH3 domain-containing 36.8 1.1E+02 0.0025 28.9 6.7 29 73-101 65-95 (206)
64 PF07716 bZIP_2: Basic region 36.5 70 0.0015 23.6 4.2 23 133-155 30-52 (54)
65 PF03904 DUF334: Domain of unk 36.5 1.1E+02 0.0025 29.7 6.6 41 134-174 42-82 (230)
66 PF07676 PD40: WD40-like Beta 36.2 15 0.00033 24.5 0.5 23 22-44 4-26 (39)
67 PF09726 Macoilin: Transmembra 35.8 1.3E+02 0.0028 33.6 7.8 39 132-170 422-481 (697)
68 PF04880 NUDE_C: NUDE protein, 35.8 22 0.00048 32.8 1.7 39 133-176 19-57 (166)
69 PF14854 LURAP: Leucine rich a 34.9 2.9E+02 0.0063 24.5 8.2 33 144-176 24-56 (121)
70 PF04977 DivIC: Septum formati 34.6 1.3E+02 0.0029 22.8 5.7 33 136-168 18-50 (80)
71 PF04156 IncA: IncA protein; 34.3 1.9E+02 0.0042 25.9 7.6 44 133-176 93-136 (191)
72 PF08781 DP: Transcription fac 34.3 2.2E+02 0.0048 25.8 7.7 42 136-177 2-46 (142)
73 COG1579 Zn-ribbon protein, pos 34.2 1.6E+02 0.0034 28.9 7.2 44 132-175 93-136 (239)
74 PRK03947 prefoldin subunit alp 33.7 2E+02 0.0043 24.8 7.3 48 132-179 91-138 (140)
75 PF08317 Spc7: Spc7 kinetochor 33.2 1.8E+02 0.004 28.9 7.8 42 136-177 210-251 (325)
76 PRK06800 fliH flagellar assemb 32.1 2.4E+02 0.0052 27.0 7.8 36 133-168 36-71 (228)
77 PRK10884 SH3 domain-containing 31.6 2.3E+02 0.005 26.8 7.8 22 147-168 137-158 (206)
78 PF06156 DUF972: Protein of un 31.0 2.3E+02 0.0049 24.3 7.0 21 136-156 23-43 (107)
79 PF07200 Mod_r: Modifier of ru 31.0 2.4E+02 0.0052 24.5 7.4 33 150-182 56-88 (150)
80 KOG3863 bZIP transcription fac 31.0 76 0.0016 34.9 4.9 75 89-171 480-554 (604)
81 PF12325 TMF_TATA_bd: TATA ele 30.9 3.1E+02 0.0068 23.9 7.9 44 133-176 21-64 (120)
82 PF05377 FlaC_arch: Flagella a 30.4 2.3E+02 0.0049 21.8 6.1 35 133-167 5-39 (55)
83 PF12308 Noelin-1: Neurogenesi 30.4 1.6E+02 0.0034 25.3 5.7 52 132-183 44-95 (101)
84 PRK13729 conjugal transfer pil 30.3 1.8E+02 0.0038 31.3 7.4 44 136-179 77-120 (475)
85 PF08826 DMPK_coil: DMPK coile 30.0 2.7E+02 0.0058 21.7 7.4 37 133-169 16-52 (61)
86 PRK09039 hypothetical protein; 29.4 1.8E+02 0.004 29.4 7.2 42 134-175 143-184 (343)
87 PF07407 Seadorna_VP6: Seadorn 29.3 1.7E+02 0.0037 30.3 6.8 31 136-166 33-63 (420)
88 KOG4010 Coiled-coil protein TP 29.0 1.7E+02 0.0038 27.9 6.3 39 134-172 43-81 (208)
89 PRK10722 hypothetical protein; 28.9 4.4E+02 0.0095 26.1 9.3 35 148-182 175-209 (247)
90 PF11382 DUF3186: Protein of u 28.6 1.5E+02 0.0032 29.6 6.2 40 132-171 36-75 (308)
91 PF07106 TBPIP: Tat binding pr 28.6 2.4E+02 0.0052 25.2 7.1 47 133-179 84-132 (169)
92 PF06156 DUF972: Protein of un 28.6 1.7E+02 0.0037 25.0 5.8 44 134-177 14-57 (107)
93 KOG1103 Predicted coiled-coil 28.5 3.1E+02 0.0068 28.7 8.5 47 134-180 244-290 (561)
94 PRK14127 cell division protein 28.2 1.8E+02 0.0039 25.1 5.9 24 136-159 38-61 (109)
95 smart00787 Spc7 Spc7 kinetocho 28.1 2.5E+02 0.0055 28.2 7.8 48 136-183 205-252 (312)
96 KOG2829 E2F-like protein [Tran 28.0 1.6E+02 0.0035 29.9 6.2 64 135-198 132-201 (326)
97 PRK13923 putative spore coat p 27.9 2.6E+02 0.0056 26.1 7.2 40 133-172 109-148 (170)
98 PF01519 DUF16: Protein of unk 27.9 4E+02 0.0086 23.0 8.3 46 135-180 53-98 (102)
99 PF10224 DUF2205: Predicted co 27.8 3.2E+02 0.007 22.4 7.0 16 161-176 28-43 (80)
100 PF00170 bZIP_1: bZIP transcri 27.6 2.7E+02 0.0058 20.9 6.9 34 136-169 27-60 (64)
101 PF12718 Tropomyosin_1: Tropom 27.6 3E+02 0.0064 24.5 7.4 34 136-169 22-55 (143)
102 PF01519 DUF16: Protein of unk 27.5 2.6E+02 0.0057 24.0 6.6 43 134-176 59-101 (102)
103 PF14584 DUF4446: Protein of u 27.4 3.1E+02 0.0067 24.8 7.5 38 152-189 49-86 (151)
104 PF07888 CALCOCO1: Calcium bin 27.2 2.6E+02 0.0055 30.6 8.1 17 136-152 144-160 (546)
105 PF04420 CHD5: CHD5-like prote 27.0 2.2E+02 0.0048 25.7 6.6 42 136-177 41-94 (161)
106 PF11853 DUF3373: Protein of u 26.9 60 0.0013 34.8 3.3 35 134-169 24-58 (489)
107 KOG2196 Nuclear porin [Nuclear 26.5 1.7E+02 0.0036 28.9 6.0 42 132-173 117-158 (254)
108 PF05377 FlaC_arch: Flagella a 26.3 2.7E+02 0.0058 21.4 5.9 35 138-172 3-37 (55)
109 PF10805 DUF2730: Protein of u 26.1 2.3E+02 0.005 23.9 6.1 22 155-176 64-85 (106)
110 PF10224 DUF2205: Predicted co 25.7 2E+02 0.0044 23.6 5.5 44 132-175 20-63 (80)
111 COG1382 GimC Prefoldin, chaper 25.5 3.1E+02 0.0067 24.2 6.9 41 134-174 69-109 (119)
112 PRK09039 hypothetical protein; 24.8 2.7E+02 0.0059 28.2 7.5 35 135-169 123-157 (343)
113 PF04849 HAP1_N: HAP1 N-termin 24.8 2.9E+02 0.0064 28.0 7.5 44 140-183 232-275 (306)
114 COG1730 GIM5 Predicted prefold 24.7 4.5E+02 0.0097 23.8 8.0 48 132-179 91-138 (145)
115 PF05064 Nsp1_C: Nsp1-like C-t 24.7 43 0.00092 28.7 1.5 26 143-168 58-83 (116)
116 KOG4497 Uncharacterized conser 24.4 73 0.0016 33.1 3.2 37 14-50 162-202 (447)
117 PF13874 Nup54: Nucleoporin co 24.3 4E+02 0.0087 23.4 7.6 46 133-178 56-101 (141)
118 PF12329 TMF_DNA_bd: TATA elem 24.3 2.4E+02 0.0053 22.4 5.6 45 133-177 17-61 (74)
119 TIGR00414 serS seryl-tRNA synt 23.9 4.1E+02 0.009 27.6 8.7 65 132-196 41-117 (418)
120 PRK13922 rod shape-determining 23.9 2.4E+02 0.0052 27.1 6.6 26 136-161 70-95 (276)
121 PF11559 ADIP: Afadin- and alp 23.9 4.7E+02 0.01 22.8 8.0 33 136-168 74-106 (151)
122 PLN02320 seryl-tRNA synthetase 23.8 3.8E+02 0.0082 29.0 8.6 64 133-196 105-178 (502)
123 COG3159 Uncharacterized protei 23.7 1.5E+02 0.0033 28.6 5.1 23 83-105 12-34 (218)
124 PF04156 IncA: IncA protein; 23.6 4.6E+02 0.0099 23.5 8.0 35 134-168 129-163 (191)
125 smart00338 BRLZ basic region l 23.1 3.3E+02 0.0072 20.5 6.4 34 136-169 27-60 (65)
126 PF00038 Filament: Intermediat 23.1 4E+02 0.0088 25.7 8.1 39 134-172 215-253 (312)
127 PF08317 Spc7: Spc7 kinetochor 23.0 3.8E+02 0.0081 26.7 8.0 41 136-176 224-264 (325)
128 PF11559 ADIP: Afadin- and alp 22.9 4.8E+02 0.01 22.7 7.9 34 135-168 59-92 (151)
129 PF04111 APG6: Autophagy prote 22.9 4.2E+02 0.0092 26.5 8.3 30 133-162 62-91 (314)
130 PLN02678 seryl-tRNA synthetase 22.8 4.4E+02 0.0096 27.9 8.7 65 132-196 44-119 (448)
131 PF06637 PV-1: PV-1 protein (P 22.6 2.7E+02 0.0058 29.4 6.8 33 133-166 348-380 (442)
132 PF10018 Med4: Vitamin-D-recep 22.2 3.7E+02 0.0079 24.7 7.2 44 134-178 15-58 (188)
133 PRK13729 conjugal transfer pil 22.2 3.2E+02 0.0069 29.4 7.5 46 137-182 71-116 (475)
134 PRK14011 prefoldin subunit alp 22.2 5E+02 0.011 23.3 7.8 51 132-182 85-139 (144)
135 COG1579 Zn-ribbon protein, pos 22.1 3.8E+02 0.0083 26.2 7.5 36 136-171 39-74 (239)
136 PHA01750 hypothetical protein 22.0 3E+02 0.0065 22.2 5.6 32 145-176 38-69 (75)
137 PF11853 DUF3373: Protein of u 22.0 76 0.0016 34.1 3.0 27 150-176 32-58 (489)
138 PF12329 TMF_DNA_bd: TATA elem 21.9 4.1E+02 0.0089 21.1 7.7 37 136-172 34-70 (74)
139 PRK10698 phage shock protein P 21.9 4.5E+02 0.0097 25.0 7.9 39 139-177 110-148 (222)
140 PLN02281 chlorophyllide a oxyg 21.8 3.5E+02 0.0076 29.5 7.9 39 138-176 124-162 (536)
141 KOG4196 bZIP transcription fac 21.8 2.2E+02 0.0047 25.7 5.3 37 146-182 78-114 (135)
142 PF13942 Lipoprotein_20: YfhG 21.8 4.4E+02 0.0096 24.8 7.5 45 133-177 114-158 (179)
143 PF10883 DUF2681: Protein of u 21.7 4.2E+02 0.0092 22.1 6.7 33 136-168 24-56 (87)
144 COG1730 GIM5 Predicted prefold 20.9 3.4E+02 0.0074 24.6 6.5 43 132-174 98-140 (145)
145 PRK03947 prefoldin subunit alp 20.9 4.5E+02 0.0097 22.6 7.1 42 134-175 5-46 (140)
146 PRK13169 DNA replication intia 20.3 3E+02 0.0066 23.8 5.8 19 137-155 24-42 (110)
147 PF07888 CALCOCO1: Calcium bin 20.3 4.2E+02 0.0091 29.0 8.0 11 140-150 155-165 (546)
148 smart00787 Spc7 Spc7 kinetocho 20.1 3.8E+02 0.0083 27.0 7.3 20 133-152 149-168 (312)
149 PF04012 PspA_IM30: PspA/IM30 20.0 5.2E+02 0.011 23.8 7.8 33 136-168 99-131 (221)
No 1
>KOG0627 consensus Heat shock transcription factor [Transcription]
Probab=100.00 E-value=3.7e-44 Score=346.16 Aligned_cols=180 Identities=49% Similarity=0.797 Sum_probs=160.1
Q ss_pred CCCCCCCCCcHHHHHHHhccCCCCCCceEEcCCCCeEEEecCchhhhhhcccccCCCChhhHhhhhccCceeeeC--CCc
Q 017908 5 SAANGNSLPPFLSKIYDMVEDPSTNDIVSWSSSNNSFIVWKVAEFSRDLLPKYFKHSNFSSFVRQLNTYGFRKVD--PDR 82 (364)
Q Consensus 5 s~~~~~~~~~Fl~KLy~mLed~~~~~IIsWs~~G~SFvI~d~~~F~k~VLP~yFkhsnfsSFvRQLN~YGFrKv~--~d~ 82 (364)
+++....+++|+.|||.||+||++++||+|+++|++|||||+.+|++.+||+||||+||+|||||||+|||||+. +++
T Consensus 5 ~~~~~~~~~~Fl~K~y~~v~Dps~~~iisWs~~g~sFvv~d~~~F~~~~Lp~~FKh~NfsSFvRQLN~YgFrKv~~~~~~ 84 (304)
T KOG0627|consen 5 GLSEASGPPPFLEKLYEMVEDPSTDEIISWSPSGNSFVIWNPEEFAKVLLPLYFKHNNFSSFVRQLNMYGFRKVDFKSDR 84 (304)
T ss_pred CccccCCCCcHHHHHHHHhcCCCCCCceEECCCCCccccCCHHHHHHHHhHHhccccCccceeeeecccceeecCCCCCc
Confidence 344556899999999999999999999999999999999999999999999999999999999999999999999 999
Q ss_pred ceecCCCcccCCcccchhhhccCCCcccCCC--Ccccc--cCCCcchhhccccChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017908 83 YEFANEGFLRGQKHLLKSISRRKPAQVHGQQ--QPKLQ--NSSVGACVEVGKYGLEEEVEILKRDKNVLMQELVRLRQQQ 158 (364)
Q Consensus 83 ~eF~H~~F~Rg~~~LL~~IkRkk~~~~~~~~--q~~~~--~ss~~a~~evg~~~LeeEve~LKrD~~~L~qELv~LRQqQ 158 (364)
|||+|++|+||+++||++|+||++..+.... .++.. ......++...+..+++++.+|+++++.|++|+++||+++
T Consensus 85 wEF~n~~F~rg~~~LL~~I~rrk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~lr~~~ 164 (304)
T KOG0627|consen 85 WEFSNPCFVRGQKLLLKNIKRRKSASRIFQTKDSPKSFERQLNLYGFVKIRQLNLKESAKSLSKENEVLQRELVELRQQQ 164 (304)
T ss_pred eeecChhHhcChHHHHHHHhhhccccCCcccccCcchhhhhhhHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhhH
Confidence 9999999999999999999999998776531 11111 1112234556677899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcc
Q 017908 159 QATDRQLHTVGQRVQVMEQRQQQMIN 184 (364)
Q Consensus 159 q~~~~qLq~L~qrLq~mEqRQqqmms 184 (364)
+.++++++.+.+++..+++||+++++
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (304)
T KOG0627|consen 165 DALRATIQTSKRVVKSKETRNSLILS 190 (304)
T ss_pred HHHHHHHHhhccccCchhhHHHHHhh
Confidence 99999999999999999999999976
No 2
>PF00447 HSF_DNA-bind: HSF-type DNA-binding; InterPro: IPR000232 Heat shock factor (HSF) is a transcriptional activator of heat shock genes []: it binds specifically to heat shock promoter elements, which are palindromic sequences rich with repetitive purine and pyrimidine motifs []. Under normal conditions, HSF is a homo-trimeric cytoplasmic protein, but heat shock activation results in relocalisation to the nucleus []. Each HSF monomer contains one C-terminal and three N-terminal leucine zipper repeats []. Point mutations in these regions result in disruption of cellular localisation, rendering the protein constitutively nuclear []. Two sequences flanking the N-terminal zippers fit the consensus of a bi- partite nuclear localisation signal (NLS). Interaction between the N- and C-terminal zippers may result in a structure that masks the NLS sequences: following activation of HSF, these may then be unmasked, resulting in relocalisation of the protein to the nucleus []. The DNA-binding component of HSF lies to the N terminus of the first NLS region, and is referred to as the HSF domain.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1FBQ_B 1FYL_B 1FBS_A 1FYM_B 3HTS_B 2HTS_A 3HSF_A 1FBU_B 1FYK_A 2LDU_A ....
Probab=100.00 E-value=3.6e-35 Score=243.36 Aligned_cols=93 Identities=58% Similarity=1.035 Sum_probs=81.5
Q ss_pred cHHHHHHHhccCCCCCCceEEcCCCCeEEEecCchhhhhhcccccCCCChhhHhhhhccCceeeeCCC---------cce
Q 017908 14 PFLSKIYDMVEDPSTNDIVSWSSSNNSFIVWKVAEFSRDLLPKYFKHSNFSSFVRQLNTYGFRKVDPD---------RYE 84 (364)
Q Consensus 14 ~Fl~KLy~mLed~~~~~IIsWs~~G~SFvI~d~~~F~k~VLP~yFkhsnfsSFvRQLN~YGFrKv~~d---------~~e 84 (364)
+||.|||+||+|++++++|+|+++|++|||+|+.+|++.|||+||+|+||+||+||||+|||+|+... .|+
T Consensus 1 ~F~~kL~~~l~~~~~~~~I~W~~~G~~fiI~d~~~f~~~vLp~~F~~~~~~SF~RQLn~yGF~k~~~~~~~~~~~~~~~~ 80 (103)
T PF00447_consen 1 KFLSKLYEMLEDPENSDIIRWSPDGDSFIIHDPEEFEKEVLPKYFKHSNFSSFVRQLNMYGFKKVSSDSNQSSLSSNIWE 80 (103)
T ss_dssp HHHHHHHHHHCTTTTTTTCEECTTSSEEEES-HHHHHHHTHHHHSST--HHHHHHHHHHTTEEECC-SSCTTSSTTTTEE
T ss_pred ChHHHHHHHHcCCCCCCEEEEeCCCCEEEEeecHHHhhhccccccCccccceeeeEeeeeeeEEEecCccccccCCCCeE
Confidence 59999999999999999999999999999999999999999999999999999999999999999643 399
Q ss_pred ecCCCcccCCcccchhhhccCC
Q 017908 85 FANEGFLRGQKHLLKSISRRKP 106 (364)
Q Consensus 85 F~H~~F~Rg~~~LL~~IkRkk~ 106 (364)
|+|++|+||++++|..|+|+++
T Consensus 81 f~h~~F~r~~~~lL~~I~r~~~ 102 (103)
T PF00447_consen 81 FYHPNFRRGQPDLLSKIKRRKS 102 (103)
T ss_dssp EEETT-BTTBCCCTTTS---TT
T ss_pred ECCcCccCCCHHHHhhCccCCC
Confidence 9999999999999999999875
No 3
>smart00415 HSF heat shock factor.
Probab=100.00 E-value=7.7e-35 Score=243.29 Aligned_cols=94 Identities=64% Similarity=1.204 Sum_probs=90.7
Q ss_pred CCCcHHHHHHHhccCCCCCCceEEcCCCCeEEEecCchhhhhhcccccCCCChhhHhhhhccCceeeeCC----------
Q 017908 11 SLPPFLSKIYDMVEDPSTNDIVSWSSSNNSFIVWKVAEFSRDLLPKYFKHSNFSSFVRQLNTYGFRKVDP---------- 80 (364)
Q Consensus 11 ~~~~Fl~KLy~mLed~~~~~IIsWs~~G~SFvI~d~~~F~k~VLP~yFkhsnfsSFvRQLN~YGFrKv~~---------- 80 (364)
.+|.|+.|||+||+|+++++||+|+++|++|+|+|+..|++.|||+||+|+||+||+||||+|||+|+..
T Consensus 1 ~~~~F~~kL~~~l~~~~~~~iI~W~~~G~~f~I~d~~~f~~~vLp~~Fk~~~~~SF~RqLn~yGF~k~~~~~~~~~~~~~ 80 (105)
T smart00415 1 QPPPFLTKLYLLVEDPSTDKIISWSPSGKSFVIWDPEEFAKNLLPRYFKHNNFSSFVRQLNMYGFRKVDPEFQGILYNFT 80 (105)
T ss_pred CCCcHHHHHHHHHhCCCCCCEEEECCCCCEEEEcCHHHHHHHHHHHhcCCCCHHHHHHHHHhcCCEEeccccccccccCC
Confidence 4789999999999999999999999999999999999999999999999999999999999999999865
Q ss_pred -CcceecCCCcccCCcccchhhhcc
Q 017908 81 -DRYEFANEGFLRGQKHLLKSISRR 104 (364)
Q Consensus 81 -d~~eF~H~~F~Rg~~~LL~~IkRk 104 (364)
+.|+|+|++|+||+++||..|+||
T Consensus 81 ~~~~~F~h~~F~Rg~~~lL~~I~Rk 105 (105)
T smart00415 81 SDQWEFANPDFVRGQPELLRNIKRK 105 (105)
T ss_pred CCceEEECcCccCcCHHHHHhCcCC
Confidence 689999999999999999999986
No 4
>COG5169 HSF1 Heat shock transcription factor [Transcription]
Probab=99.98 E-value=5.5e-33 Score=267.90 Aligned_cols=104 Identities=40% Similarity=0.791 Sum_probs=95.6
Q ss_pred CCCCCCCCcHHHHHHHhccCCCCCCceEEcCCCCeEEEecCchhhhhhcccccCCCChhhHhhhhccCceeeeC-C----
Q 017908 6 AANGNSLPPFLSKIYDMVEDPSTNDIVSWSSSNNSFIVWKVAEFSRDLLPKYFKHSNFSSFVRQLNTYGFRKVD-P---- 80 (364)
Q Consensus 6 ~~~~~~~~~Fl~KLy~mLed~~~~~IIsWs~~G~SFvI~d~~~F~k~VLP~yFkhsnfsSFvRQLN~YGFrKv~-~---- 80 (364)
+.....++.|+.|||.||++|++.++|+|+++|++|||+|++.|.+.|||+||||+||+|||||||+|||+||. .
T Consensus 4 s~~~~~~~~FV~KLy~iLe~~e~~k~I~Ws~~G~sfvI~~~~~F~~~iLpr~FKh~NfaSFVRQLN~YgFhKv~h~~~~~ 83 (282)
T COG5169 4 SSRWSQPKEFVHKLYQILEEPEYYKLIQWSPDGRSFVILDPEEFTKVILPRYFKHGNFASFVRQLNKYGFHKVSHKSGQR 83 (282)
T ss_pred CcCCCchhHHHHHHHHHhcCcccCCceEECCCCCEEEEeCcchhhhhhhhhhhcccCHHHHHHHHHhcCcEeccCCcccc
Confidence 45566778999999999999999999999999999999999999999999999999999999999999999996 2
Q ss_pred -----CcceecCCCcccCCcccchhhhccCCCcc
Q 017908 81 -----DRYEFANEGFLRGQKHLLKSISRRKPAQV 109 (364)
Q Consensus 81 -----d~~eF~H~~F~Rg~~~LL~~IkRkk~~~~ 109 (364)
+.|||.|++|++|..++|++|+|+|....
T Consensus 84 ~~~n~~~wef~~~nF~~g~~~~L~~i~r~ka~~~ 117 (282)
T COG5169 84 SYYNENVWEFGNKNFQLGMIELLKKIKRKKAPSN 117 (282)
T ss_pred cccchhheeecCchhccCcHHHHHHhhhhhcCcc
Confidence 24999999999999999999999765443
No 5
>PF00178 Ets: Ets-domain; InterPro: IPR000418 Transcription factors are protein molecules that bind to specific DNA sequences in the genome, resulting in the induction or inhibition of gene transcription []. The ets oncogene is such a factor, possessing a region of 85-90 amino acids known as the ETS (erythroblast transformation specific) domain [, , ]. This domain is rich in positively-charged and aromatic residues, and binds to purine-rich segments of DNA. The ETS domain has been identified in other transcription factors such as PU.1, human erg, human elf-1, human elk-1, GA binding protein, and a number of others [, , ]. It is generally localized at the C terminus of the protein, with the exception of ELF-1, ELK-1, ELK-3, ELK-4 and ERF where it is found at the N terminus. NMR-analysis of the structure of the Ets domains revealed that it contains three alpha-helixes (1-3) and four-stranded beta-sheets (1-4) arranged in the order alpha1-beta1-beta2-alpha2-alpha3-beta3-beta4 forming a winged helix-turn-helix (wHTH) topology []. The third alpha-helix is responsive to contact to the major groove of the DNA. Different members of the Ets family proteins display distinct DNA binding specificities. The Ets domains and the flanking amino acid sequences of the proteins influence the binding affinity, and the alteration of a single amino acid in the Ets domain can change its DNA binding specificities. Avian leukemia virus E26 is a replication defective retrovirus that induces a mixed erythroid/myeloid leukemia in chickens.This virus carries two distinct oncogenes: v-myb and v-ets. The ets portion of this oncogene is required for the induction of erythroblastosis. V-ets and c-ets-1, its cellular progenitor, have been shown [] to be nuclear DNA-binding proteins. Ets-1 differs slightly from v-ets at its carboxy-terminal region. In most species where it has been sequenced, c-ets-1 exists in various isoforms generated by alternative splicing and differential phosphorylation.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1DUX_F 4AVP_B 1HBX_G 1BC7_C 1K6O_A 1BC8_C 1PUE_E 1FLI_A 2DAO_A 1WWX_A ....
Probab=95.82 E-value=0.0042 Score=50.96 Aligned_cols=71 Identities=24% Similarity=0.412 Sum_probs=51.7
Q ss_pred HHHHHHHhccCCCCCCceEEcC-CCCeEEEecCchhhhhhc-ccccCCCChhhHhhhhccCce----eeeCCCccee
Q 017908 15 FLSKIYDMVEDPSTNDIVSWSS-SNNSFIVWKVAEFSRDLL-PKYFKHSNFSSFVRQLNTYGF----RKVDPDRYEF 85 (364)
Q Consensus 15 Fl~KLy~mLed~~~~~IIsWs~-~G~SFvI~d~~~F~k~VL-P~yFkhsnfsSFvRQLN~YGF----rKv~~d~~eF 85 (364)
+..=|.++|+|+++.++|+|.. .+.-|.|.|+.++++--- -+--...+|.++-|-|..|.= .|+...+..|
T Consensus 4 Lw~FLl~LL~d~~~~~~I~Wt~~~~~eFki~d~~~vA~lWG~~k~~~~m~yeklsR~LR~yy~k~il~kv~g~r~~Y 80 (85)
T PF00178_consen 4 LWQFLLELLEDPSNSDIIAWTGKRGGEFKIVDPEAVARLWGKHKNRPNMNYEKLSRALRYYYKKGILEKVKGQRLVY 80 (85)
T ss_dssp HHHHHHHHHHSGGGTTTEEEEETSTTEEEESSHHHHHHHHHHHTTSTT-SHHHHHHHHHHHHHTTSEEEETTSTTEE
T ss_pred HHHHHHHHhcCccCCCeeEeeccCCCeEEecCHHHHHHHHHHHcCCccccHHHHHHHHHHHhhCCeEEecCCcEEEE
Confidence 3445788999999999999999 999999999999986421 122345689999999987632 4455454444
No 6
>smart00413 ETS erythroblast transformation specific domain. variation of the helix-turn-helix motif
Probab=93.53 E-value=0.083 Score=43.80 Aligned_cols=58 Identities=24% Similarity=0.402 Sum_probs=45.0
Q ss_pred HHHHHhccCCCCCCceEEcC-CCCeEEEecCchhhhhhc-ccccCCCChhhHhhhhccCc
Q 017908 17 SKIYDMVEDPSTNDIVSWSS-SNNSFIVWKVAEFSRDLL-PKYFKHSNFSSFVRQLNTYG 74 (364)
Q Consensus 17 ~KLy~mLed~~~~~IIsWs~-~G~SFvI~d~~~F~k~VL-P~yFkhsnfsSFvRQLN~YG 74 (364)
.=|.++|.||++.++|+|.. ++.-|.+.|+.+.++--= -+-=...||...-|-|..|-
T Consensus 6 ~FL~~LL~d~~~~~~I~W~~k~~g~Fkl~~~~~vA~lWG~~Knk~~M~YeklSRaLRyyy 65 (87)
T smart00413 6 QFLLDLLLDPENGDIIRWTDRDGGEFKLVDPEEVARLWGQRKNKPNMNYEKLSRALRYYY 65 (87)
T ss_pred HHHHHHHcCccCCCeEEeeCCCCCEEEecCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHH
Confidence 44788999999999999998 688999999988776421 12223568999999997763
No 7
>KOG3806 consensus Predicted transcription factor [Transcription]
Probab=90.10 E-value=0.43 Score=44.34 Aligned_cols=74 Identities=20% Similarity=0.360 Sum_probs=53.8
Q ss_pred CCcHHHHHHHhccCCCCCCceEEcC-CCCeEEEecCchhhhhhcc-cccCCCChhhHhhhhccCc----eeeeCCCccee
Q 017908 12 LPPFLSKIYDMVEDPSTNDIVSWSS-SNNSFIVWKVAEFSRDLLP-KYFKHSNFSSFVRQLNTYG----FRKVDPDRYEF 85 (364)
Q Consensus 12 ~~~Fl~KLy~mLed~~~~~IIsWs~-~G~SFvI~d~~~F~k~VLP-~yFkhsnfsSFvRQLN~YG----FrKv~~d~~eF 85 (364)
.-....=|.++|+|+++.++|+|.. +|--|.+.|+++-++.-=- +-=.+-||.-.-|-|.+|= -+||...+..|
T Consensus 68 ~iqLwqFLleLl~d~~~~~~I~Wtg~~g~EFkl~dp~eVArlWG~rK~kp~MNYdKLSRaLRyyY~kni~~Kv~Gkr~~Y 147 (177)
T KOG3806|consen 68 QIQLWQFLLELLQDESNAHIIAWTGKDGLEFKLVDPDEVARLWGARKNKPNMNYDKLSRALRYYYDKNILKKVPGKRFVY 147 (177)
T ss_pred hhhHHHHHHHHHhCcccCCeeEEeCCCCceEEecCHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCceeecCCceEEE
Confidence 4455666778899999999999998 6889999999999876422 2223678888888887762 24554444444
No 8
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=87.55 E-value=2.8 Score=33.53 Aligned_cols=41 Identities=27% Similarity=0.344 Sum_probs=25.1
Q ss_pred hHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017908 133 LEEEVEILKRD-------KNVLMQELVRLRQQQQATDRQLHTVGQRVQ 173 (364)
Q Consensus 133 LeeEve~LKrD-------~~~L~qELv~LRQqQq~~~~qLq~L~qrLq 173 (364)
|..++++|+.+ +..|.+|..+|++.+......|..|..++.
T Consensus 23 Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~kl~ 70 (72)
T PF06005_consen 23 LQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSLLGKLE 70 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 44555666655 556666666666666666666666666554
No 9
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=83.10 E-value=5.2 Score=31.57 Aligned_cols=42 Identities=17% Similarity=0.279 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Q 017908 136 EVEILKRDKNVLMQELVRL-------RQQQQATDRQLHTVGQRVQVMEQ 177 (364)
Q Consensus 136 Eve~LKrD~~~L~qELv~L-------RQqQq~~~~qLq~L~qrLq~mEq 177 (364)
.+++|+++|..|.+++..+ +++.......|..|+.||.+||+
T Consensus 15 ~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RLk~leq 63 (65)
T TIGR02449 15 YLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITRLKALEQ 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 3455666666555555444 34555556666666667666664
No 10
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=81.08 E-value=7 Score=28.54 Aligned_cols=40 Identities=18% Similarity=0.350 Sum_probs=26.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017908 133 LEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRV 172 (364)
Q Consensus 133 LeeEve~LKrD~~~L~qELv~LRQqQq~~~~qLq~L~qrL 172 (364)
++.+++.||+..+.|..+..+|+++.+.+..+++.|...+
T Consensus 3 lE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl 42 (45)
T PF02183_consen 3 LERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEKL 42 (45)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4566677777777777777777777666666666665544
No 11
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=75.47 E-value=19 Score=29.10 Aligned_cols=38 Identities=32% Similarity=0.439 Sum_probs=26.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017908 133 LEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQ 170 (364)
Q Consensus 133 LeeEve~LKrD~~~L~qELv~LRQqQq~~~~qLq~L~q 170 (364)
|.-++++||..++.|.+|+..+++....++..-..|.+
T Consensus 23 LQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~ 60 (79)
T COG3074 23 LQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKE 60 (79)
T ss_pred HHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45688889998888888887776665555555444443
No 12
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=71.20 E-value=25 Score=30.70 Aligned_cols=52 Identities=25% Similarity=0.512 Sum_probs=39.1
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhhc
Q 017908 132 GLEEEVEILKRDKNVLMQELVRLRQQQ---QATDRQLHTVGQRVQVMEQRQQQMI 183 (364)
Q Consensus 132 ~LeeEve~LKrD~~~L~qELv~LRQqQ---q~~~~qLq~L~qrLq~mEqRQqqmm 183 (364)
.+..++.+|.+.+..+.+||++|-... +.....+..|...+..++.|.+-++
T Consensus 34 ~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~L 88 (120)
T PF12325_consen 34 SLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLL 88 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467778888888888899998888755 4455666677778888888877554
No 13
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=70.61 E-value=12 Score=27.29 Aligned_cols=34 Identities=26% Similarity=0.362 Sum_probs=25.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017908 133 LEEEVEILKRDKNVLMQELVRLRQQQQATDRQLH 166 (364)
Q Consensus 133 LeeEve~LKrD~~~L~qELv~LRQqQq~~~~qLq 166 (364)
|...++.|+.++..|.+|...|+.+.+.+...++
T Consensus 10 LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl~ 43 (45)
T PF02183_consen 10 LKASYDSLKAEYDSLKKENEKLRAEVQELKEKLQ 43 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 5566778888888888888888877777666554
No 14
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=67.51 E-value=18 Score=38.50 Aligned_cols=39 Identities=26% Similarity=0.366 Sum_probs=33.1
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017908 132 GLEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQ 170 (364)
Q Consensus 132 ~LeeEve~LKrD~~~L~qELv~LRQqQq~~~~qLq~L~q 170 (364)
.+..++..|.++|+.|..|..+||++.+.++.+|+.-++
T Consensus 70 ~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~ 108 (472)
T TIGR03752 70 ELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQ 108 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 467788999999999999999999988888888875543
No 15
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=66.87 E-value=48 Score=26.20 Aligned_cols=53 Identities=23% Similarity=0.194 Sum_probs=45.8
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 017908 132 GLEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVMEQRQQQMIN 184 (364)
Q Consensus 132 ~LeeEve~LKrD~~~L~qELv~LRQqQq~~~~qLq~L~qrLq~mEqRQqqmms 184 (364)
.|+.+++.|=+-.+.|..|...||+++......=..|.+++...-.|-..|++
T Consensus 4 ~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~ 56 (65)
T TIGR02449 4 ALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMIT 56 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788999999999999999999999999998888888888877777777765
No 16
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=66.09 E-value=38 Score=27.81 Aligned_cols=24 Identities=38% Similarity=0.473 Sum_probs=16.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 017908 133 LEEEVEILKRDKNVLMQELVRLRQ 156 (364)
Q Consensus 133 LeeEve~LKrD~~~L~qELv~LRQ 156 (364)
|.-|+++||..|..|.+|+..++-
T Consensus 23 LqmEieELKekn~~L~~e~~~~~~ 46 (79)
T PRK15422 23 LQMEIEELKEKNNSLSQEVQNAQH 46 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456788888887777776655333
No 17
>PF04340 DUF484: Protein of unknown function, DUF484; InterPro: IPR007435 This family consists of several proteins of uncharacterised function.; PDB: 3E98_B.
Probab=65.40 E-value=11 Score=35.24 Aligned_cols=65 Identities=23% Similarity=0.374 Sum_probs=22.4
Q ss_pred cCCCcccCCcccchhhhccCCCcccCCCCcccccCCCcchhhccccChHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH
Q 017908 86 ANEGFLRGQKHLLKSISRRKPAQVHGQQQPKLQNSSVGACVEVGKYGLEEEVEILKRDKNVLMQELVRLRQ---QQQATD 162 (364)
Q Consensus 86 ~H~~F~Rg~~~LL~~IkRkk~~~~~~~~q~~~~~ss~~a~~evg~~~LeeEve~LKrD~~~L~qELv~LRQ---qQq~~~ 162 (364)
.||.|...+++||..|+=.-+.. + .+. -.+-+++.|++++..|..++..|.. +...+-
T Consensus 17 ~~PdFf~~~~~ll~~l~~ph~~~--------------~-avS----L~erQ~~~LR~~~~~L~~~l~~Li~~Ar~Ne~~~ 77 (225)
T PF04340_consen 17 QHPDFFERHPELLAELRLPHPSG--------------G-AVS----LVERQLERLRERNRQLEEQLEELIENARENEAIF 77 (225)
T ss_dssp ---------------------------------------HHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCcHHHHhCHHHHHHcCCCCCCC--------------C-ccc----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 69999999999999987322110 0 110 0244667777777777777776665 333444
Q ss_pred HHHHHHH
Q 017908 163 RQLHTVG 169 (364)
Q Consensus 163 ~qLq~L~ 169 (364)
+.++.+.
T Consensus 78 ~~~~~l~ 84 (225)
T PF04340_consen 78 QRLHRLV 84 (225)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444443
No 18
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=61.14 E-value=38 Score=31.23 Aligned_cols=46 Identities=20% Similarity=0.422 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 017908 138 EILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVMEQRQQQMI 183 (364)
Q Consensus 138 e~LKrD~~~L~qELv~LRQqQq~~~~qLq~L~qrLq~mEqRQqqmm 183 (364)
..++.++..|..|+..|+++...++..+..|.+++..+++-.+.|+
T Consensus 100 ~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~ 145 (161)
T TIGR02894 100 QALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLI 145 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666666666666666666666666666655555444
No 19
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=59.72 E-value=30 Score=37.28 Aligned_cols=50 Identities=16% Similarity=0.314 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 017908 135 EEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVMEQRQQQMIN 184 (364)
Q Consensus 135 eEve~LKrD~~~L~qELv~LRQqQq~~~~qLq~L~qrLq~mEqRQqqmms 184 (364)
.++.++..++..|+.+|+.++++...+.++...|.+.|+.+.++|.+|-.
T Consensus 226 ~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~a 275 (596)
T KOG4360|consen 226 KELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTA 275 (596)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 35566677888899999999999999999999999999999999988876
No 20
>PRK00295 hypothetical protein; Provisional
Probab=59.64 E-value=54 Score=25.76 Aligned_cols=43 Identities=19% Similarity=0.169 Sum_probs=29.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017908 133 LEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVM 175 (364)
Q Consensus 133 LeeEve~LKrD~~~L~qELv~LRQqQq~~~~qLq~L~qrLq~m 175 (364)
|+.++.......+.|-..|.+..++...+..+++.|.+|+..+
T Consensus 10 LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~ 52 (68)
T PRK00295 10 LESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEEM 52 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555555556666676666766666677777777777777764
No 21
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=56.60 E-value=1.5e+02 Score=28.22 Aligned_cols=50 Identities=22% Similarity=0.351 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH------------------HH-------HHHHHHHHHHHHHHHHHHHHHHhhcc
Q 017908 135 EEVEILKRDKNVLMQELVRLRQ------------------QQ-------QATDRQLHTVGQRVQVMEQRQQQMIN 184 (364)
Q Consensus 135 eEve~LKrD~~~L~qELv~LRQ------------------qQ-------q~~~~qLq~L~qrLq~mEqRQqqmms 184 (364)
.||..||..|+.|..|...||. .| ..+.+.+..-.++|..+|.||+.++.
T Consensus 55 ~EIR~LKe~NqkLqedNqELRdLCCFLDddRqKgrklarEWQrFGryta~vmr~eV~~Y~~KL~eLE~kq~~L~r 129 (195)
T PF10226_consen 55 NEIRGLKEVNQKLQEDNQELRDLCCFLDDDRQKGRKLAREWQRFGRYTASVMRQEVAQYQQKLKELEDKQEELIR 129 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcccchhHHHhHHHhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677788777777777777764 12 22333344445688889999998887
No 22
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=56.16 E-value=40 Score=25.50 Aligned_cols=31 Identities=35% Similarity=0.499 Sum_probs=16.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017908 133 LEEEVEILKRDKNVLMQELVRLRQQQQATDR 163 (364)
Q Consensus 133 LeeEve~LKrD~~~L~qELv~LRQqQq~~~~ 163 (364)
|+.++..|..++..|..++..|+++...+..
T Consensus 31 Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~ 61 (64)
T PF00170_consen 31 LEEKVEELESENEELKKELEQLKKEIQSLKS 61 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455555555555555555555554444433
No 23
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=55.73 E-value=59 Score=29.23 Aligned_cols=49 Identities=33% Similarity=0.432 Sum_probs=35.1
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017908 132 GLEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVMEQRQQ 180 (364)
Q Consensus 132 ~LeeEve~LKrD~~~L~qELv~LRQqQq~~~~qLq~L~qrLq~mEqRQq 180 (364)
.|..++..+....+.|..|+..++.....+.+.++.+..++..++.++.
T Consensus 56 ~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~~ 104 (140)
T PF10473_consen 56 TLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELESLNS 104 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3566666666677777777777877777777777777777777666554
No 24
>PRK00736 hypothetical protein; Provisional
Probab=55.29 E-value=63 Score=25.37 Aligned_cols=42 Identities=17% Similarity=0.209 Sum_probs=27.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017908 133 LEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQV 174 (364)
Q Consensus 133 LeeEve~LKrD~~~L~qELv~LRQqQq~~~~qLq~L~qrLq~ 174 (364)
|+.++.....-.+.|-..|.+..++...+..++..|..|+..
T Consensus 10 LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~ 51 (68)
T PRK00736 10 LEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLS 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555566666666666666666666666677777777766655
No 25
>PF03310 Cauli_DNA-bind: Caulimovirus DNA-binding protein; InterPro: IPR004986 The gene III product (P15) of cauliflower mosaic virus (CaMV) is a DNA binding protein in which the DNA binding activity is located on its C-terminal part. A family of related proteins is expressed by other members of the Caulimoviridae.; GO: 0003677 DNA binding; PDB: 3F6N_A 3K4T_D.
Probab=54.91 E-value=24 Score=31.12 Aligned_cols=39 Identities=18% Similarity=0.369 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 017908 146 VLMQELVRLRQQQQATDRQLHTVGQRVQVMEQRQQQMIN 184 (364)
Q Consensus 146 ~L~qELv~LRQqQq~~~~qLq~L~qrLq~mEqRQqqmms 184 (364)
..+.||+.+++.++.+...|++|+.+++..++.+.++.+
T Consensus 3 ~~~kEi~~l~~~lk~~~~~i~ailek~~s~~~~~e~lEs 41 (121)
T PF03310_consen 3 TIIKEISELIQELKKIESDIKAILEKLQSTEQDQENLES 41 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTS--HHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHH
Confidence 345677777777777777777777777766665555555
No 26
>PRK04325 hypothetical protein; Provisional
Probab=54.43 E-value=62 Score=25.83 Aligned_cols=44 Identities=18% Similarity=0.123 Sum_probs=26.9
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017908 132 GLEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVM 175 (364)
Q Consensus 132 ~LeeEve~LKrD~~~L~qELv~LRQqQq~~~~qLq~L~qrLq~m 175 (364)
.|+.++.......+.|-..|.+.+++...+..++..|..|+..+
T Consensus 13 ~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~~ 56 (74)
T PRK04325 13 ELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRDA 56 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35555555555666666666666666666666666666666553
No 27
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=54.35 E-value=30 Score=33.59 Aligned_cols=34 Identities=26% Similarity=0.239 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017908 139 ILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRV 172 (364)
Q Consensus 139 ~LKrD~~~L~qELv~LRQqQq~~~~qLq~L~qrL 172 (364)
+|.+..+.|.+||.+||-+.+...++|+.|.+|-
T Consensus 58 ~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq 91 (263)
T PRK10803 58 QLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQ 91 (263)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 4555666666666666666666666666554433
No 28
>COG5481 Uncharacterized conserved small protein containing a coiled-coil domain [Function unknown]
Probab=54.02 E-value=44 Score=26.30 Aligned_cols=34 Identities=26% Similarity=0.405 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHH
Q 017908 145 NVLMQELVRLRQQQQATDRQLHTVGQ------RVQVMEQR 178 (364)
Q Consensus 145 ~~L~qELv~LRQqQq~~~~qLq~L~q------rLq~mEqR 178 (364)
..+..++.+|||+......-+.+|.+ |++.|+++
T Consensus 7 aeirl~~arLrqeH~D~DaaInAmi~~~cD~L~iqRmKkK 46 (67)
T COG5481 7 AEIRLTLARLRQEHADFDAAINAMIATGCDALRIQRMKKK 46 (67)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHhCCcHHHHHHHHHH
Confidence 34566788999998889888888876 66666654
No 29
>PRK10963 hypothetical protein; Provisional
Probab=53.76 E-value=37 Score=32.06 Aligned_cols=65 Identities=17% Similarity=0.194 Sum_probs=37.4
Q ss_pred cCCCcccCCcccchhhhccCCCcccCCCCcccccCCCcchhhccccChHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH
Q 017908 86 ANEGFLRGQKHLLKSISRRKPAQVHGQQQPKLQNSSVGACVEVGKYGLEEEVEILKRDKNVLMQELVRLRQ---QQQATD 162 (364)
Q Consensus 86 ~H~~F~Rg~~~LL~~IkRkk~~~~~~~~q~~~~~ss~~a~~evg~~~LeeEve~LKrD~~~L~qELv~LRQ---qQq~~~ 162 (364)
.||.|.-.+++||..++=.-+..+. -..+ +-+++.|+..+..|..++..|-+ +...+-
T Consensus 14 ~~PdFf~~h~~Ll~~L~lph~~~ga------------VSL~-------ErQ~~~LR~r~~~Le~~l~~Li~~A~~Ne~l~ 74 (223)
T PRK10963 14 QNPDFFIRNARLVEQMRVPHPVRGT------------VSLV-------EWQMARQRNHIHVLEEEMTLLMEQAIANEDLF 74 (223)
T ss_pred HCchHHhhCHHHHHhccCCCCCCCe------------ecHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5999999999999977533221110 1112 34556666666666666555544 444455
Q ss_pred HHHHHHH
Q 017908 163 RQLHTVG 169 (364)
Q Consensus 163 ~qLq~L~ 169 (364)
++++.+.
T Consensus 75 ~~~~~l~ 81 (223)
T PRK10963 75 YRLLPLQ 81 (223)
T ss_pred HHHHHHH
Confidence 5555444
No 30
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=53.56 E-value=56 Score=25.52 Aligned_cols=44 Identities=20% Similarity=0.274 Sum_probs=26.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017908 133 LEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVME 176 (364)
Q Consensus 133 LeeEve~LKrD~~~L~qELv~LRQqQq~~~~qLq~L~qrLq~mE 176 (364)
|+.++..+....+.|-..|.+..++...++.+++.|..|+..++
T Consensus 9 LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 9 LEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45556666666666766666666666677777777777776654
No 31
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=53.31 E-value=47 Score=27.32 Aligned_cols=40 Identities=25% Similarity=0.340 Sum_probs=23.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017908 133 LEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRV 172 (364)
Q Consensus 133 LeeEve~LKrD~~~L~qELv~LRQqQq~~~~qLq~L~qrL 172 (364)
+..++..++..+..|.+|...|+++++.-...|..|+.++
T Consensus 37 L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~LLGkm 76 (79)
T PRK15422 37 LSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGRM 76 (79)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344444444555566666666666666666666665544
No 32
>PRK00846 hypothetical protein; Provisional
Probab=53.25 E-value=69 Score=26.10 Aligned_cols=44 Identities=11% Similarity=0.142 Sum_probs=26.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017908 133 LEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVME 176 (364)
Q Consensus 133 LeeEve~LKrD~~~L~qELv~LRQqQq~~~~qLq~L~qrLq~mE 176 (364)
|+.++.....-.+.|-+.|.+.+++...+..+|..|..||..++
T Consensus 18 LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~ 61 (77)
T PRK00846 18 LETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 61 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33444444445566666666666666667777777777776654
No 33
>PRK04406 hypothetical protein; Provisional
Probab=52.97 E-value=65 Score=25.87 Aligned_cols=43 Identities=16% Similarity=0.138 Sum_probs=25.9
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017908 132 GLEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQV 174 (364)
Q Consensus 132 ~LeeEve~LKrD~~~L~qELv~LRQqQq~~~~qLq~L~qrLq~ 174 (364)
.|+.++..+..-.+.|-..|.+.+++...+..++..|.+|+..
T Consensus 15 ~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~ 57 (75)
T PRK04406 15 DLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKN 57 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455555555556666666666666666666666666666655
No 34
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=52.78 E-value=55 Score=32.25 Aligned_cols=52 Identities=23% Similarity=0.293 Sum_probs=38.3
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHhhc
Q 017908 132 GLEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQ-----VMEQRQQQMI 183 (364)
Q Consensus 132 ~LeeEve~LKrD~~~L~qELv~LRQqQq~~~~qLq~L~qrLq-----~mEqRQqqmm 183 (364)
.|+.++..|-.+++.|..|...||.+.+.+-.+-+.|..+|. -|+-+|++.+
T Consensus 94 eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~l~~~~~~~~~ 150 (292)
T KOG4005|consen 94 EMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQELAELKQQQQH 150 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHHHHHH
Confidence 467788888899999999999999877777777777766655 2444555555
No 35
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=52.67 E-value=68 Score=32.10 Aligned_cols=37 Identities=35% Similarity=0.595 Sum_probs=19.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017908 133 LEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVG 169 (364)
Q Consensus 133 LeeEve~LKrD~~~L~qELv~LRQqQq~~~~qLq~L~ 169 (364)
+..+++.|+++.+.|.+|+..|.++...+..++..+.
T Consensus 48 ~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le 84 (314)
T PF04111_consen 48 LEEELEKLEQEEEELLQELEELEKEREELDQELEELE 84 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555555555544443
No 36
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=52.29 E-value=64 Score=30.78 Aligned_cols=17 Identities=24% Similarity=0.235 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 017908 140 LKRDKNVLMQELVRLRQ 156 (364)
Q Consensus 140 LKrD~~~L~qELv~LRQ 156 (364)
|..+...|..|+..|+.
T Consensus 54 L~~e~~~l~~e~e~L~~ 70 (251)
T PF11932_consen 54 LLAEYRQLEREIENLEV 70 (251)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 37
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=51.99 E-value=1.3e+02 Score=24.51 Aligned_cols=49 Identities=20% Similarity=0.361 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhh
Q 017908 134 EEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTV-------GQRVQVMEQRQQQM 182 (364)
Q Consensus 134 eeEve~LKrD~~~L~qELv~LRQqQq~~~~qLq~L-------~qrLq~mEqRQqqm 182 (364)
.+-++.+|.+...+.+|+...+.+....+++++.- .+.|-.||+.+..|
T Consensus 3 ~elLd~ir~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~km 58 (79)
T PF08581_consen 3 NELLDAIRQEFENLSQEANSYKHQKDEYEHKINSQIQEMQQIRQKVYELEQAHRKM 58 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567888888888888888887766666655433 34555566655544
No 38
>smart00338 BRLZ basic region leucin zipper.
Probab=51.64 E-value=44 Score=25.31 Aligned_cols=33 Identities=30% Similarity=0.467 Sum_probs=18.2
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017908 132 GLEEEVEILKRDKNVLMQELVRLRQQQQATDRQ 164 (364)
Q Consensus 132 ~LeeEve~LKrD~~~L~qELv~LRQqQq~~~~q 164 (364)
.|+.++..|..++..|..++..|+++...+..+
T Consensus 30 ~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~ 62 (65)
T smart00338 30 ELERKVEQLEAENERLKKEIERLRRELEKLKSE 62 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355556666666666665555555554444433
No 39
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=50.80 E-value=72 Score=29.48 Aligned_cols=42 Identities=24% Similarity=0.347 Sum_probs=31.0
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017908 132 GLEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQ 173 (364)
Q Consensus 132 ~LeeEve~LKrD~~~L~qELv~LRQqQq~~~~qLq~L~qrLq 173 (364)
.+..++..|+..++.|..|+..|.+++..++....+|+.-+.
T Consensus 108 ~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im~ 149 (161)
T TIGR02894 108 RLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDIMD 149 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677777778888888888888888888877777765443
No 40
>PRK02793 phi X174 lysis protein; Provisional
Probab=50.03 E-value=80 Score=25.04 Aligned_cols=44 Identities=9% Similarity=0.101 Sum_probs=26.6
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017908 132 GLEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVM 175 (364)
Q Consensus 132 ~LeeEve~LKrD~~~L~qELv~LRQqQq~~~~qLq~L~qrLq~m 175 (364)
.|+.++.....-.+.|-..|.+.+++...+..++..|.+|+..+
T Consensus 12 ~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~ 55 (72)
T PRK02793 12 ELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKAS 55 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34555555555556666666666666666666777666666553
No 41
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=49.29 E-value=63 Score=36.12 Aligned_cols=53 Identities=17% Similarity=0.429 Sum_probs=41.2
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 017908 132 GLEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVMEQRQQQMIN 184 (364)
Q Consensus 132 ~LeeEve~LKrD~~~L~qELv~LRQqQq~~~~qLq~L~qrLq~mEqRQqqmms 184 (364)
.++..+..|+..++.-.+|+..+++..+.+...-..|..|+...++||+.++.
T Consensus 562 ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~ 614 (717)
T PF10168_consen 562 EIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMK 614 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556667777777777788888888888877778888888888888887776
No 42
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=47.93 E-value=93 Score=29.67 Aligned_cols=49 Identities=22% Similarity=0.300 Sum_probs=26.0
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017908 132 GLEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVMEQRQQ 180 (364)
Q Consensus 132 ~LeeEve~LKrD~~~L~qELv~LRQqQq~~~~qLq~L~qrLq~mEqRQq 180 (364)
.+..+++.|+++.+.|...+.++..+....+..+..|.+++..++.-.+
T Consensus 53 ~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~ 101 (251)
T PF11932_consen 53 ELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQ 101 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666655555555555555555555555555555554443333
No 43
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=47.79 E-value=83 Score=26.62 Aligned_cols=48 Identities=8% Similarity=0.129 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 017908 136 EVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVMEQRQQQMI 183 (364)
Q Consensus 136 Eve~LKrD~~~L~qELv~LRQqQq~~~~qLq~L~qrLq~mEqRQqqmm 183 (364)
.+..++++...+.+|+.+++++.+.+..++..|.....-+|++=+..+
T Consensus 28 ~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~~~dyiEe~AR~~L 75 (105)
T PRK00888 28 DYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKGGQEAIEERARNEL 75 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHc
Confidence 456777888888888888888888888888877664455555444434
No 44
>PRK02119 hypothetical protein; Provisional
Probab=47.50 E-value=91 Score=24.82 Aligned_cols=42 Identities=17% Similarity=0.158 Sum_probs=25.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017908 133 LEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQV 174 (364)
Q Consensus 133 LeeEve~LKrD~~~L~qELv~LRQqQq~~~~qLq~L~qrLq~ 174 (364)
|+.++.......+.|-..|.+.+++...+..++..|.+|+..
T Consensus 14 LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~ 55 (73)
T PRK02119 14 LEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKD 55 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455555555555666656666555666666666666666655
No 45
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=47.42 E-value=49 Score=35.30 Aligned_cols=11 Identities=36% Similarity=0.543 Sum_probs=6.5
Q ss_pred CCCccccCCCC
Q 017908 267 LDGTMSIDADA 277 (364)
Q Consensus 267 ~~~~~~~~~~~ 277 (364)
|=|.||||.-.
T Consensus 253 LIGRVPIdG~V 263 (472)
T TIGR03752 253 LIGRVPIDGTV 263 (472)
T ss_pred HhcccccCCEe
Confidence 55666766443
No 46
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=46.81 E-value=1.4e+02 Score=24.20 Aligned_cols=11 Identities=27% Similarity=0.519 Sum_probs=4.4
Q ss_pred HHHHHHHHHHH
Q 017908 146 VLMQELVRLRQ 156 (364)
Q Consensus 146 ~L~qELv~LRQ 156 (364)
.|.-|+..|+.
T Consensus 22 LLQmEieELKE 32 (79)
T COG3074 22 LLQMEIEELKE 32 (79)
T ss_pred HHHHHHHHHHH
Confidence 33334444443
No 47
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=46.64 E-value=54 Score=35.61 Aligned_cols=46 Identities=26% Similarity=0.446 Sum_probs=35.9
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Q 017908 132 GLEEEVEILKRDKNVLMQELVRLRQQ-------QQATDRQLHTVGQRVQVMEQ 177 (364)
Q Consensus 132 ~LeeEve~LKrD~~~L~qELv~LRQq-------Qq~~~~qLq~L~qrLq~mEq 177 (364)
.+++++..|++++.-|+.+|.++|.+ ....++.+|.|.++|..+.+
T Consensus 166 ~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~~ 218 (546)
T KOG0977|consen 166 ALEDELKRLKAENSRLREELARARKQLDDETLLRVDLQNRVQTLLEELAFLKR 218 (546)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 47788889999999999998888873 44567788888888777653
No 48
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=46.62 E-value=80 Score=30.71 Aligned_cols=51 Identities=22% Similarity=0.257 Sum_probs=38.5
Q ss_pred hHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 017908 133 LEEEVEILKRD-------KNVLMQELVRLRQQQQATDRQLHTVGQRVQVMEQRQQQMI 183 (364)
Q Consensus 133 LeeEve~LKrD-------~~~L~qELv~LRQqQq~~~~qLq~L~qrLq~mEqRQqqmm 183 (364)
.+.++.+|.|. .-.|.+.|..|+++...+.-++..+...|+.+.+||+.+.
T Consensus 38 ~~~r~~~le~~~~~~~~~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y 95 (263)
T PRK10803 38 VEDRVTQLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIY 95 (263)
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 34555555442 2356778888888888888888888889999999998775
No 49
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=46.16 E-value=1.5e+02 Score=23.63 Aligned_cols=38 Identities=16% Similarity=0.226 Sum_probs=19.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017908 133 LEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQ 170 (364)
Q Consensus 133 LeeEve~LKrD~~~L~qELv~LRQqQq~~~~qLq~L~q 170 (364)
|+.+|..+=.....|..|+..|+++.......-..|..
T Consensus 9 LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~ 46 (72)
T PF06005_consen 9 LEEKIQQAVETIALLQMENEELKEKNNELKEENEELKE 46 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 44555555555556666666666654444444444433
No 50
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=44.96 E-value=63 Score=33.25 Aligned_cols=27 Identities=33% Similarity=0.459 Sum_probs=22.2
Q ss_pred ccChHHHHHHHHHHHHHHHHHHHHHHH
Q 017908 130 KYGLEEEVEILKRDKNVLMQELVRLRQ 156 (364)
Q Consensus 130 ~~~LeeEve~LKrD~~~L~qELv~LRQ 156 (364)
.++|.+|.++||++++.|..|+.+|..
T Consensus 34 ~~aLr~EN~~LKkEN~~Lk~eVerLE~ 60 (420)
T PF07407_consen 34 NFALRMENHSLKKENNDLKIEVERLEN 60 (420)
T ss_pred hhhHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 457888889999999999888888854
No 51
>PF14282 FlxA: FlxA-like protein
Probab=43.34 E-value=1.5e+02 Score=25.05 Aligned_cols=44 Identities=20% Similarity=0.363 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHH
Q 017908 134 EEEVEILKRDKNVLMQELVRLRQ-----------QQQATDRQLHTVGQRVQVMEQ 177 (364)
Q Consensus 134 eeEve~LKrD~~~L~qELv~LRQ-----------qQq~~~~qLq~L~qrLq~mEq 177 (364)
...++.|++....|.++|..|.. +.+.+..+|+.|...|..+..
T Consensus 18 ~~~I~~L~~Qi~~Lq~ql~~l~~~~~~~~e~k~~q~q~Lq~QI~~LqaQI~qlq~ 72 (106)
T PF14282_consen 18 DSQIEQLQKQIKQLQEQLQELSQDSDLDAEQKQQQIQLLQAQIQQLQAQIAQLQS 72 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778888888888887766654 456677777777666665443
No 52
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=42.88 E-value=79 Score=29.23 Aligned_cols=39 Identities=28% Similarity=0.382 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017908 134 EEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRV 172 (364)
Q Consensus 134 eeEve~LKrD~~~L~qELv~LRQqQq~~~~qLq~L~qrL 172 (364)
++|-++|+++...+..||..|||-.-.-+.+...|.++|
T Consensus 28 EeE~eeLr~EL~KvEeEI~TLrqvL~aKer~~~eLKrkL 66 (162)
T PF04201_consen 28 EEEREELRSELAKVEEEIQTLRQVLAAKERHCAELKRKL 66 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 566788999988888999999987766666666666543
No 53
>PF11414 Suppressor_APC: Adenomatous polyposis coli tumour suppressor protein; PDB: 1M5I_A.
Probab=42.20 E-value=1.1e+02 Score=25.24 Aligned_cols=39 Identities=23% Similarity=0.369 Sum_probs=25.7
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017908 132 GLEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQ 170 (364)
Q Consensus 132 ~LeeEve~LKrD~~~L~qELv~LRQqQq~~~~qLq~L~q 170 (364)
++-..++.|.+++..|++++..+.+...=...+|+.+.+
T Consensus 4 ~~lk~mkeLEqEkd~LLqgLe~~Er~r~Wy~~qL~~vq~ 42 (84)
T PF11414_consen 4 NMLKRMKELEQEKDVLLQGLEMEERERDWYQQQLQSVQE 42 (84)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 345677899999999999998777654444445544433
No 54
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=41.56 E-value=92 Score=27.97 Aligned_cols=32 Identities=22% Similarity=0.390 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017908 138 EILKRDKNVLMQELVRLRQQQQATDRQLHTVG 169 (364)
Q Consensus 138 e~LKrD~~~L~qELv~LRQqQq~~~~qLq~L~ 169 (364)
+.|..++..|++||.+|++....+...+.++.
T Consensus 77 ~eLE~~k~~L~qqv~~L~~e~s~~~~E~da~k 108 (135)
T KOG4196|consen 77 HELEKEKAELQQQVEKLKEENSRLRRELDAYK 108 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666677777666665555544444443
No 55
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=40.36 E-value=1.1e+02 Score=25.65 Aligned_cols=33 Identities=15% Similarity=0.308 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017908 135 EEVEILKRDKNVLMQELVRLRQQQQATDRQLHT 167 (364)
Q Consensus 135 eEve~LKrD~~~L~qELv~LRQqQq~~~~qLq~ 167 (364)
.++..|..++..|.+|+..|+.+...-...-+.
T Consensus 49 k~v~~L~~e~~~l~~E~e~L~~~l~~e~~Ek~~ 81 (87)
T PF12709_consen 49 KKVDELENENKALKRENEQLKKKLDTEREEKQE 81 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555544443333333
No 56
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=39.90 E-value=1.8e+02 Score=26.99 Aligned_cols=20 Identities=25% Similarity=0.466 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 017908 162 DRQLHTVGQRVQVMEQRQQQ 181 (364)
Q Consensus 162 ~~qLq~L~qrLq~mEqRQqq 181 (364)
...|..|.++|+.+|+|-.+
T Consensus 124 r~e~ee~~~~l~~le~~~~~ 143 (175)
T PRK13182 124 RREMEEMLERLQKLEARLKK 143 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33445556666666666554
No 57
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=39.43 E-value=1.7e+02 Score=26.33 Aligned_cols=51 Identities=24% Similarity=0.301 Sum_probs=35.6
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 017908 132 GLEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVMEQRQQQM 182 (364)
Q Consensus 132 ~LeeEve~LKrD~~~L~qELv~LRQqQq~~~~qLq~L~qrLq~mEqRQqqm 182 (364)
.+..++..++.++..|.+++..++.+...++.....+...|+..|+-..+|
T Consensus 70 ~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~~~~~~~l~~~E~ek~q~ 120 (140)
T PF10473_consen 70 QLELELDTLRSEKENLDKELQKKQEKVSELESLNSSLENLLQEKEQEKVQL 120 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 466677777777777777777777777777776666666666666554444
No 58
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=39.28 E-value=1.6e+02 Score=30.58 Aligned_cols=65 Identities=15% Similarity=0.376 Sum_probs=37.8
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHH-HHHhhcccccccccCCCCc
Q 017908 132 GLEEEVEILKRDKNVLMQELVRLR----------QQQQATDRQLHTVGQRVQVMEQ-RQQQMINLSTFLIDNIPSA 196 (364)
Q Consensus 132 ~LeeEve~LKrD~~~L~qELv~LR----------QqQq~~~~qLq~L~qrLq~mEq-RQqqmms~~~~ll~~~~~~ 196 (364)
.+..+++.|+++.+.+-+++..++ ++-..+..++..+...+..++. +...++..++++-.++|-+
T Consensus 39 ~l~~~~~~lr~~rn~~sk~i~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~iPN~~~~~vP~g 114 (425)
T PRK05431 39 ELQTELEELQAERNALSKEIGQAKRKGEDAEALIAEVKELKEEIKALEAELDELEAELEELLLRIPNLPHDSVPVG 114 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccCCCC
Confidence 356677888888888887776533 2334444455555555555543 3334444666666666644
No 59
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=39.02 E-value=1.9e+02 Score=22.58 Aligned_cols=49 Identities=6% Similarity=0.296 Sum_probs=37.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 017908 133 LEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVMEQRQQQ 181 (364)
Q Consensus 133 LeeEve~LKrD~~~L~qELv~LRQqQq~~~~qLq~L~qrLq~mEqRQqq 181 (364)
+.+++.+++.+.+.+...+..+.+.....+..+.++..++..++.-++=
T Consensus 4 i~e~l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~n~kW 52 (71)
T PF10779_consen 4 IKEKLNRIETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKIKSNTKW 52 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777777777777788887788888888888888887766553
No 60
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=38.58 E-value=99 Score=30.47 Aligned_cols=25 Identities=32% Similarity=0.375 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 017908 136 EVEILKRDKNVLMQELVRLRQQQQA 160 (364)
Q Consensus 136 Eve~LKrD~~~L~qELv~LRQqQq~ 160 (364)
.+..|+++|+.|.+|+..|+++++.
T Consensus 67 ~~~~l~~EN~~Lr~e~~~l~~~~~~ 91 (283)
T TIGR00219 67 DVNNLEYENYKLRQELLKKNQQLEI 91 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456677777777777776554443
No 61
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=37.97 E-value=1.9e+02 Score=32.28 Aligned_cols=14 Identities=36% Similarity=0.574 Sum_probs=8.5
Q ss_pred ChHHHHHHHHHHHH
Q 017908 132 GLEEEVEILKRDKN 145 (364)
Q Consensus 132 ~LeeEve~LKrD~~ 145 (364)
.|+.|+.+|++|..
T Consensus 549 ~lE~E~~~lr~elk 562 (697)
T PF09726_consen 549 QLESELKKLRRELK 562 (697)
T ss_pred HHHHHHHHHHHHHH
Confidence 46666666666543
No 62
>PRK14127 cell division protein GpsB; Provisional
Probab=37.75 E-value=1.6e+02 Score=25.38 Aligned_cols=36 Identities=17% Similarity=0.305 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017908 138 EILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQ 173 (364)
Q Consensus 138 e~LKrD~~~L~qELv~LRQqQq~~~~qLq~L~qrLq 173 (364)
+.+-.|.+.|..|+..|+.+...++.++..+..++.
T Consensus 33 d~V~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~ 68 (109)
T PRK14127 33 DDVIKDYEAFQKEIEELQQENARLKAQVDELTKQVS 68 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 445556666666666666666666665555555444
No 63
>PRK10884 SH3 domain-containing protein; Provisional
Probab=36.77 E-value=1.1e+02 Score=28.89 Aligned_cols=29 Identities=10% Similarity=0.137 Sum_probs=18.1
Q ss_pred CceeeeC--CCcceecCCCcccCCcccchhh
Q 017908 73 YGFRKVD--PDRYEFANEGFLRGQKHLLKSI 101 (364)
Q Consensus 73 YGFrKv~--~d~~eF~H~~F~Rg~~~LL~~I 101 (364)
.||.+|. .++--|.|..|....|.+-..+
T Consensus 65 ~~w~~Vr~~~G~~GWV~~~~Ls~~p~~~~rl 95 (206)
T PRK10884 65 TNYAQIRDSKGRTAWIPLKQLSTTPSLRTRV 95 (206)
T ss_pred CCEEEEEeCCCCEEeEEHHHhcCCccHHHHH
Confidence 4687774 3344677777777777654433
No 64
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=36.51 E-value=70 Score=23.56 Aligned_cols=23 Identities=39% Similarity=0.598 Sum_probs=11.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 017908 133 LEEEVEILKRDKNVLMQELVRLR 155 (364)
Q Consensus 133 LeeEve~LKrD~~~L~qELv~LR 155 (364)
|+.++..|..++..|.+++..|+
T Consensus 30 le~~~~~L~~en~~L~~~i~~L~ 52 (54)
T PF07716_consen 30 LEQEVQELEEENEQLRQEIAQLE 52 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 44445555555555555544443
No 65
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=36.49 E-value=1.1e+02 Score=29.71 Aligned_cols=41 Identities=20% Similarity=0.465 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017908 134 EEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQV 174 (364)
Q Consensus 134 eeEve~LKrD~~~L~qELv~LRQqQq~~~~qLq~L~qrLq~ 174 (364)
.+|+++|++++..+..++..+.++|...++++..+...|..
T Consensus 42 nee~~eLk~qnkli~K~l~ei~~~qd~reK~~~~I~ssL~e 82 (230)
T PF03904_consen 42 NEEIQELKRQNKLIIKYLSEIEEKQDIREKNLKEIKSSLEE 82 (230)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999888776665
No 66
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=36.16 E-value=15 Score=24.53 Aligned_cols=23 Identities=13% Similarity=0.371 Sum_probs=16.4
Q ss_pred hccCCCCCCceEEcCCCCeEEEe
Q 017908 22 MVEDPSTNDIVSWSSSNNSFIVW 44 (364)
Q Consensus 22 mLed~~~~~IIsWs~~G~SFvI~ 44 (364)
+++.+..+.-..|+|||+.|+..
T Consensus 4 ~t~~~~~~~~p~~SpDGk~i~f~ 26 (39)
T PF07676_consen 4 LTNSPGDDGSPAWSPDGKYIYFT 26 (39)
T ss_dssp ES-SSSSEEEEEE-TTSSEEEEE
T ss_pred cccCCccccCEEEecCCCEEEEE
Confidence 45566667778999999998865
No 67
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=35.82 E-value=1.3e+02 Score=33.62 Aligned_cols=39 Identities=31% Similarity=0.448 Sum_probs=24.4
Q ss_pred ChHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017908 132 GLEEEVEILKRDK---------------------NVLMQELVRLRQQQQATDRQLHTVGQ 170 (364)
Q Consensus 132 ~LeeEve~LKrD~---------------------~~L~qELv~LRQqQq~~~~qLq~L~q 170 (364)
.|+.++++||.|. ..+..||..+|++...++..++.|++
T Consensus 422 rLE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~ 481 (697)
T PF09726_consen 422 RLEADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQ 481 (697)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677777777653 33445566666766777777766654
No 68
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=35.80 E-value=22 Score=32.82 Aligned_cols=39 Identities=26% Similarity=0.457 Sum_probs=9.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017908 133 LEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVME 176 (364)
Q Consensus 133 LeeEve~LKrD~~~L~qELv~LRQqQq~~~~qLq~L~qrLq~mE 176 (364)
|++|| .+++.|..|+.|||.+...+...+ .+.+++...+
T Consensus 19 LE~EL----dEKE~L~~~~QRLkDE~RDLKqEl-~V~ek~~~~~ 57 (166)
T PF04880_consen 19 LESEL----DEKENLREEVQRLKDELRDLKQEL-IVQEKLRKAN 57 (166)
T ss_dssp HHHHH----HHHHHHHHCH-------------------------
T ss_pred HHHHH----HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhhhh
Confidence 44554 446667777777777777776666 5555555443
No 69
>PF14854 LURAP: Leucine rich adaptor protein
Probab=34.92 E-value=2.9e+02 Score=24.48 Aligned_cols=33 Identities=24% Similarity=0.289 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017908 144 KNVLMQELVRLRQQQQATDRQLHTVGQRVQVME 176 (364)
Q Consensus 144 ~~~L~qELv~LRQqQq~~~~qLq~L~qrLq~mE 176 (364)
...|.+|++.||+-=..+-+|+-.+.+-++.++
T Consensus 24 l~~Lr~EM~~LRqlDvkLL~QL~~vNEsIe~~K 56 (121)
T PF14854_consen 24 LAFLRKEMAGLRQLDVKLLQQLLAVNESIEEVK 56 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 445666778888876667777777777666654
No 70
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=34.55 E-value=1.3e+02 Score=22.79 Aligned_cols=33 Identities=12% Similarity=0.276 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017908 136 EVEILKRDKNVLMQELVRLRQQQQATDRQLHTV 168 (364)
Q Consensus 136 Eve~LKrD~~~L~qELv~LRQqQq~~~~qLq~L 168 (364)
.+..++++.+.|..++..++++...+..++..|
T Consensus 18 ~~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 18 RYYQLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445667777777777777777777777777777
No 71
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=34.35 E-value=1.9e+02 Score=25.94 Aligned_cols=44 Identities=27% Similarity=0.443 Sum_probs=19.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017908 133 LEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVME 176 (364)
Q Consensus 133 LeeEve~LKrD~~~L~qELv~LRQqQq~~~~qLq~L~qrLq~mE 176 (364)
+..++..+.+....+..++..++.........++....++...+
T Consensus 93 l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~ 136 (191)
T PF04156_consen 93 LQEELDQLQERIQELESELEKLKEDLQELRELLKSVEERLDSLD 136 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444444333
No 72
>PF08781 DP: Transcription factor DP; InterPro: IPR014889 DP forms a heterodimer with E2F and regulates genes involved in cell cycle progression. The transcriptional activity of E2F is inhibited by the retinoblastoma protein which binds to the E2F-DP heterodimer [] and negatively regulates the G1-S transition. ; PDB: 2AZE_A.
Probab=34.28 E-value=2.2e+02 Score=25.77 Aligned_cols=42 Identities=26% Similarity=0.244 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Q 017908 136 EVEILKRDKNVLMQELVRLRQQQQATDRQL---HTVGQRVQVMEQ 177 (364)
Q Consensus 136 Eve~LKrD~~~L~qELv~LRQqQq~~~~qL---q~L~qrLq~mEq 177 (364)
++++|+.++..++..+.+-+++.|.+..|. ++|++|.+.+++
T Consensus 2 ~~~~Le~ek~~~~~rI~~K~~~LqEL~~Q~va~knLv~RN~~~~~ 46 (142)
T PF08781_consen 2 ECEELEEEKQRRRERIKKKKEQLQELILQQVAFKNLVQRNRQLEQ 46 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 567777777777766666555555554444 355555555544
No 73
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=34.24 E-value=1.6e+02 Score=28.86 Aligned_cols=44 Identities=23% Similarity=0.413 Sum_probs=30.5
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017908 132 GLEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVM 175 (364)
Q Consensus 132 ~LeeEve~LKrD~~~L~qELv~LRQqQq~~~~qLq~L~qrLq~m 175 (364)
.|..++..++++...|..|++.+...+..+..++..+..++..+
T Consensus 93 aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~ 136 (239)
T COG1579 93 ALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERL 136 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46667777777777787788777777777777666665554443
No 74
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=33.72 E-value=2e+02 Score=24.82 Aligned_cols=48 Identities=27% Similarity=0.436 Sum_probs=37.0
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017908 132 GLEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVMEQRQ 179 (364)
Q Consensus 132 ~LeeEve~LKrD~~~L~qELv~LRQqQq~~~~qLq~L~qrLq~mEqRQ 179 (364)
.+++-++.|++..+.|...+..+.++...+..++..+.+.++.+.+++
T Consensus 91 ~~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~ 138 (140)
T PRK03947 91 DLDEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQLQQEA 138 (140)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 567777888888888888888888888888888887777777766554
No 75
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=33.16 E-value=1.8e+02 Score=28.94 Aligned_cols=42 Identities=14% Similarity=0.333 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017908 136 EVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVMEQ 177 (364)
Q Consensus 136 Eve~LKrD~~~L~qELv~LRQqQq~~~~qLq~L~qrLq~mEq 177 (364)
+++.++.+...+..++...|+....++.+++.+...+..++.
T Consensus 210 eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~ 251 (325)
T PF08317_consen 210 ELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEE 251 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444444433
No 76
>PRK06800 fliH flagellar assembly protein H; Validated
Probab=32.11 E-value=2.4e+02 Score=27.04 Aligned_cols=36 Identities=31% Similarity=0.451 Sum_probs=25.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017908 133 LEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTV 168 (364)
Q Consensus 133 LeeEve~LKrD~~~L~qELv~LRQqQq~~~~qLq~L 168 (364)
+..+.+.|......|-+|+..|++.||.+.+.=+.|
T Consensus 36 ~~~d~~~L~~~Q~~L~~e~~~l~~eqQ~l~~er~~l 71 (228)
T PRK06800 36 IQKDHEELLAQQKSLHKELNQLRQEQQKLERERQQL 71 (228)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566777777788888888888777776655544
No 77
>PRK10884 SH3 domain-containing protein; Provisional
Probab=31.65 E-value=2.3e+02 Score=26.85 Aligned_cols=22 Identities=18% Similarity=0.326 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 017908 147 LMQELVRLRQQQQATDRQLHTV 168 (364)
Q Consensus 147 L~qELv~LRQqQq~~~~qLq~L 168 (364)
|..|..+|+++...+.+++..+
T Consensus 137 L~~~n~~L~~~l~~~~~~~~~l 158 (206)
T PRK10884 137 LKEENQKLKNQLIVAQKKVDAA 158 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 78
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=31.03 E-value=2.3e+02 Score=24.28 Aligned_cols=21 Identities=43% Similarity=0.548 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 017908 136 EVEILKRDKNVLMQELVRLRQ 156 (364)
Q Consensus 136 Eve~LKrD~~~L~qELv~LRQ 156 (364)
++..||.....|..|..+|+-
T Consensus 23 ~~~~LK~~~~~l~EEN~~L~~ 43 (107)
T PF06156_consen 23 ELEELKKQLQELLEENARLRI 43 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333344433333333333333
No 79
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=30.97 E-value=2.4e+02 Score=24.51 Aligned_cols=33 Identities=33% Similarity=0.376 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 017908 150 ELVRLRQQQQATDRQLHTVGQRVQVMEQRQQQM 182 (364)
Q Consensus 150 ELv~LRQqQq~~~~qLq~L~qrLq~mEqRQqqm 182 (364)
++..+|.+....-..++.|..+....+++++.+
T Consensus 56 ~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~~l 88 (150)
T PF07200_consen 56 ELEELRSQLQELYEELKELESEYQEKEQQQDEL 88 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444
No 80
>KOG3863 consensus bZIP transcription factor NRF1 [Transcription]
Probab=30.97 E-value=76 Score=34.91 Aligned_cols=75 Identities=28% Similarity=0.369 Sum_probs=41.9
Q ss_pred CcccCCcccchhhhccCCCcccCCCCcccccCCCcchhhccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017908 89 GFLRGQKHLLKSISRRKPAQVHGQQQPKLQNSSVGACVEVGKYGLEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTV 168 (364)
Q Consensus 89 ~F~Rg~~~LL~~IkRkk~~~~~~~~q~~~~~ss~~a~~evg~~~LeeEve~LKrD~~~L~qELv~LRQqQq~~~~qLq~L 168 (364)
.|...+-.|.+-|+||...+... |+- ......|+ ..|+.+++.|+++++.|.+|=..+..-...+..+|..|
T Consensus 480 ~lte~QLslIrDIRRRgKNkvAA--QnC--RKRKLd~I----~nLE~ev~~l~~eKeqLl~Er~~~d~~L~~~kqqls~L 551 (604)
T KOG3863|consen 480 KLTEEQLSLIRDIRRRGKNKVAA--QNC--RKRKLDCI----LNLEDEVEKLQKEKEQLLRERDELDSTLGVMKQQLSEL 551 (604)
T ss_pred ccCHHHHHHhhccccccccchhc--cch--hhhHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555667777787764332221 100 00001111 25788888888888888777666666555666666655
Q ss_pred HHH
Q 017908 169 GQR 171 (364)
Q Consensus 169 ~qr 171 (364)
-+.
T Consensus 552 ~~~ 554 (604)
T KOG3863|consen 552 YQE 554 (604)
T ss_pred HHH
Confidence 443
No 81
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=30.94 E-value=3.1e+02 Score=23.94 Aligned_cols=44 Identities=16% Similarity=0.296 Sum_probs=32.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017908 133 LEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVME 176 (364)
Q Consensus 133 LeeEve~LKrD~~~L~qELv~LRQqQq~~~~qLq~L~qrLq~mE 176 (364)
|...+.++.-+...|..|+.+|.++.......|..|......++
T Consensus 21 L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~ 64 (120)
T PF12325_consen 21 LQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELR 64 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666777777788888888888888888888877776665543
No 82
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=30.44 E-value=2.3e+02 Score=21.83 Aligned_cols=35 Identities=14% Similarity=0.267 Sum_probs=15.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017908 133 LEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHT 167 (364)
Q Consensus 133 LeeEve~LKrD~~~L~qELv~LRQqQq~~~~qLq~ 167 (364)
++.++.++.-..+.+..|+..++...+.++.-++.
T Consensus 5 lEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk~ 39 (55)
T PF05377_consen 5 LENELPRIESSINTVKKENEEISESVEKIEENVKD 39 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444433
No 83
>PF12308 Noelin-1: Neurogenesis glycoprotein; InterPro: IPR022082 This domain family is found in eukaryotes, and is approximately 100 amino acids in length. The family is found in association with PF02191 from PFAM. There are two conserved sequence motifs: SAQ and VQN. Noelin-1 is a glycoprotein which is secreted mainly by postmitotic neurogenic tissues in the developing central and peripheral nervous systems, first appearing after neural tube closure. It is likely that it forms large multimeric complexes.It has a divergent function in neurogenesis. In animal caps neuralized by expression of noggin, co-expression of Noelin-1 causes expression of neuronal differentiation markers several stages before neurogenesis normally occurs in this tissue. Finally, only secreted forms of the protein can activate sensory marker expression, while all forms of the protein can induce early neurogenesis.
Probab=30.43 E-value=1.6e+02 Score=25.34 Aligned_cols=52 Identities=17% Similarity=0.203 Sum_probs=36.1
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 017908 132 GLEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVMEQRQQQMI 183 (364)
Q Consensus 132 ~LeeEve~LKrD~~~L~qELv~LRQqQq~~~~qLq~L~qrLq~mEqRQqqmm 183 (364)
.|.+++..+..-.++|-.--.+--|..+.++.+|+.|..++...|.-++..+
T Consensus 44 qllekVqNmSqsievL~~RT~rdlqyv~~~E~~mk~l~~k~~~~e~~~~~l~ 95 (101)
T PF12308_consen 44 QLLEKVQNMSQSIEVLDLRTQRDLQYVRKMETQMKGLESKFRQVEDDRKSLS 95 (101)
T ss_pred HHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHhcCHHHhh
Confidence 3556666666666666444333334568999999999999998887666554
No 84
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=30.31 E-value=1.8e+02 Score=31.27 Aligned_cols=44 Identities=16% Similarity=0.307 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017908 136 EVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVMEQRQ 179 (364)
Q Consensus 136 Eve~LKrD~~~L~qELv~LRQqQq~~~~qLq~L~qrLq~mEqRQ 179 (364)
+.++|+++.+.|.+|+..+.++.+..+.+|..|...+..++.++
T Consensus 77 kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 77 TAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555566666666666666665554
No 85
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=29.98 E-value=2.7e+02 Score=21.71 Aligned_cols=37 Identities=11% Similarity=0.278 Sum_probs=15.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017908 133 LEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVG 169 (364)
Q Consensus 133 LeeEve~LKrD~~~L~qELv~LRQqQq~~~~qLq~L~ 169 (364)
+.+++...|..+..+...|.....+.+.+..+|..|.
T Consensus 16 ~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~ 52 (61)
T PF08826_consen 16 IQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLK 52 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444333333333333333333333
No 86
>PRK09039 hypothetical protein; Validated
Probab=29.43 E-value=1.8e+02 Score=29.38 Aligned_cols=42 Identities=17% Similarity=0.380 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017908 134 EEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVM 175 (364)
Q Consensus 134 eeEve~LKrD~~~L~qELv~LRQqQq~~~~qLq~L~qrLq~m 175 (364)
..+++.|++....|..+|..++++-...+.+|..|.++|+..
T Consensus 143 ~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a 184 (343)
T PRK09039 143 NQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVA 184 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444555555555555544
No 87
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=29.35 E-value=1.7e+02 Score=30.27 Aligned_cols=31 Identities=16% Similarity=0.195 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017908 136 EVEILKRDKNVLMQELVRLRQQQQATDRQLH 166 (364)
Q Consensus 136 Eve~LKrD~~~L~qELv~LRQqQq~~~~qLq 166 (364)
|.-.|+.+|..|.+|...|+.+...+++.+.
T Consensus 33 e~~aLr~EN~~LKkEN~~Lk~eVerLE~e~l 63 (420)
T PF07407_consen 33 ENFALRMENHSLKKENNDLKIEVERLENEML 63 (420)
T ss_pred hhhhHHHHhHHHHHHHHHHHHHHHHHHHHhh
Confidence 4456666666666666666666666655554
No 88
>KOG4010 consensus Coiled-coil protein TPD52 [General function prediction only]
Probab=28.99 E-value=1.7e+02 Score=27.87 Aligned_cols=39 Identities=31% Similarity=0.429 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017908 134 EEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRV 172 (364)
Q Consensus 134 eeEve~LKrD~~~L~qELv~LRQqQq~~~~qLq~L~qrL 172 (364)
++|-+.|+.+...+..||+.|||-.-.-+.....|.++|
T Consensus 43 e~Ekeelr~EL~kvEeEI~TLrqVLaAKerH~~ELKRKL 81 (208)
T KOG4010|consen 43 EEEKEELRTELAKVEEEIVTLRQVLAAKERHAAELKRKL 81 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445578888888888888888887666666666665543
No 89
>PRK10722 hypothetical protein; Provisional
Probab=28.91 E-value=4.4e+02 Score=26.05 Aligned_cols=35 Identities=31% Similarity=0.364 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 017908 148 MQELVRLRQQQQATDRQLHTVGQRVQVMEQRQQQM 182 (364)
Q Consensus 148 ~qELv~LRQqQq~~~~qLq~L~qrLq~mEqRQqqm 182 (364)
-.++.+|||++..++.++.....+|+.+..--+|+
T Consensus 175 D~qlD~lrqq~~~Lq~~L~~t~rKLEnLTdIERqL 209 (247)
T PRK10722 175 DSELDALRQQQQRLQYQLELTTRKLENLTDIERQL 209 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56888999999999999999999999887543333
No 90
>PF11382 DUF3186: Protein of unknown function (DUF3186); InterPro: IPR021522 This bacterial family of proteins has no known function.
Probab=28.63 E-value=1.5e+02 Score=29.61 Aligned_cols=40 Identities=30% Similarity=0.461 Sum_probs=29.2
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017908 132 GLEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQR 171 (364)
Q Consensus 132 ~LeeEve~LKrD~~~L~qELv~LRQqQq~~~~qLq~L~qr 171 (364)
.|+.+++.|+++++.|.+|+..++.+....+..+..+..+
T Consensus 36 ~l~~~~~~lr~e~~~l~~~~~~~~~~~~~~d~f~~~~~~~ 75 (308)
T PF11382_consen 36 SLEDQFDSLREENDELRAELDALQAQLNAADQFIAAVAPR 75 (308)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777888888888888777777777777777666543
No 91
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=28.62 E-value=2.4e+02 Score=25.20 Aligned_cols=47 Identities=21% Similarity=0.410 Sum_probs=20.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
Q 017908 133 LEEEVEILKRDKNVLMQELVRLRQQ--QQATDRQLHTVGQRVQVMEQRQ 179 (364)
Q Consensus 133 LeeEve~LKrD~~~L~qELv~LRQq--Qq~~~~qLq~L~qrLq~mEqRQ 179 (364)
|.+++..|+.+...|..|+..|+.. -..+...+..|.+.+..++.|-
T Consensus 84 L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL 132 (169)
T PF07106_consen 84 LREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKL 132 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555444432 1223333344444444444443
No 92
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=28.58 E-value=1.7e+02 Score=25.01 Aligned_cols=44 Identities=18% Similarity=0.263 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017908 134 EEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVMEQ 177 (364)
Q Consensus 134 eeEve~LKrD~~~L~qELv~LRQqQq~~~~qLq~L~qrLq~mEq 177 (364)
++.+..|-.+...|..++..|-++...+.-.-+.|..||...++
T Consensus 14 e~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 14 EQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44444444444444444444444555555555555555555433
No 93
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=28.52 E-value=3.1e+02 Score=28.73 Aligned_cols=47 Identities=21% Similarity=0.334 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017908 134 EEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVMEQRQQ 180 (364)
Q Consensus 134 eeEve~LKrD~~~L~qELv~LRQqQq~~~~qLq~L~qrLq~mEqRQq 180 (364)
+..+++++.+.+.|..|+.++.+.|+.+...+..|..-+.++|.-.|
T Consensus 244 ek~i~EfdiEre~LRAel~ree~r~K~lKeEmeSLkeiVkdlEA~hQ 290 (561)
T KOG1103|consen 244 EKLIEEFDIEREFLRAELEREEKRQKMLKEEMESLKEIVKDLEADHQ 290 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 44567888888999999999999999999999999988888887765
No 94
>PRK14127 cell division protein GpsB; Provisional
Probab=28.16 E-value=1.8e+02 Score=25.15 Aligned_cols=24 Identities=29% Similarity=0.416 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 017908 136 EVEILKRDKNVLMQELVRLRQQQQ 159 (364)
Q Consensus 136 Eve~LKrD~~~L~qELv~LRQqQq 159 (364)
+++.|.+++..|..|+.+|+++..
T Consensus 38 dye~l~~e~~~Lk~e~~~l~~~l~ 61 (109)
T PRK14127 38 DYEAFQKEIEELQQENARLKAQVD 61 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444333
No 95
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=28.14 E-value=2.5e+02 Score=28.22 Aligned_cols=48 Identities=13% Similarity=0.304 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 017908 136 EVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVMEQRQQQMI 183 (364)
Q Consensus 136 Eve~LKrD~~~L~qELv~LRQqQq~~~~qLq~L~qrLq~mEqRQqqmm 183 (364)
++.++|.+...+..|+...+++....+.+++.+..++...+.+.++..
T Consensus 205 eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~ 252 (312)
T smart00787 205 ELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELN 252 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555566666666666666677777777666666555444433
No 96
>KOG2829 consensus E2F-like protein [Transcription]
Probab=28.00 E-value=1.6e+02 Score=29.89 Aligned_cols=64 Identities=20% Similarity=0.215 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhcc--cccccc-cCCCCccc
Q 017908 135 EEVEILKRDKNVLMQELVRLRQQQQATDRQL---HTVGQRVQVMEQRQQQMIN--LSTFLI-DNIPSANA 198 (364)
Q Consensus 135 eEve~LKrD~~~L~qELv~LRQqQq~~~~qL---q~L~qrLq~mEqRQqqmms--~~~~ll-~~~~~~~~ 198 (364)
.++++|+.++..++.-+.+-+++.|++..|+ ++|++|.+.+|...+.-.. --||+| +..+.+..
T Consensus 132 ~dv~~le~Er~k~~erI~kK~a~lqEl~~q~~~fknLV~RN~~~e~~~~~P~~~i~LPFiiinT~k~a~I 201 (326)
T KOG2829|consen 132 QDVSELEEERKKRMERIKKKAAQLQELIEQVSAFKNLVQRNRHAESQGQPPSENIHLPFIIINTSKKAVI 201 (326)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCcccccceEEEecCCCceE
Confidence 5677777777777765555555555555443 5778888888876321111 126666 66666663
No 97
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=27.85 E-value=2.6e+02 Score=26.09 Aligned_cols=40 Identities=20% Similarity=0.241 Sum_probs=33.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017908 133 LEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRV 172 (364)
Q Consensus 133 LeeEve~LKrD~~~L~qELv~LRQqQq~~~~qLq~L~qrL 172 (364)
+.+++..|+..++.|..|+.+|++++..+...+.+|+.-+
T Consensus 109 ~~~e~~kl~~~~e~L~~e~~~L~~~~~~~~eDy~~Li~Im 148 (170)
T PRK13923 109 LSEQIGKLQEEEEKLSWENQTLKQELAITEEDYRALIVIM 148 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888999999999999999999988888888887644
No 98
>PF01519 DUF16: Protein of unknown function DUF16; InterPro: IPR002862 Proteins that contain this domain are of unknown function. It appears to be confined to proteins from Mycoplasma pneumoniae [].; PDB: 2BA2_C.
Probab=27.85 E-value=4e+02 Score=22.99 Aligned_cols=46 Identities=17% Similarity=0.307 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017908 135 EEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVMEQRQQ 180 (364)
Q Consensus 135 eEve~LKrD~~~L~qELv~LRQqQq~~~~qLq~L~qrLq~mEqRQq 180 (364)
+++..|-.....+=.++..|..+|+..-..|+.+.++|+.|..|=.
T Consensus 53 eqI~kL~e~V~~QGEqIkel~~e~k~qgktL~~I~~~L~~inkRLD 98 (102)
T PF01519_consen 53 EQINKLTEKVDKQGEQIKELQVEQKAQGKTLQLILKTLQSINKRLD 98 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444444445556666667777777777788888877743
No 99
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=27.75 E-value=3.2e+02 Score=22.38 Aligned_cols=16 Identities=19% Similarity=0.383 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 017908 161 TDRQLHTVGQRVQVME 176 (364)
Q Consensus 161 ~~~qLq~L~qrLq~mE 176 (364)
++..|..|..|+..++
T Consensus 28 LQ~sL~~L~~Rve~Vk 43 (80)
T PF10224_consen 28 LQDSLEALSDRVEEVK 43 (80)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333444444444433
No 100
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=27.63 E-value=2.7e+02 Score=20.95 Aligned_cols=34 Identities=15% Similarity=0.253 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017908 136 EVEILKRDKNVLMQELVRLRQQQQATDRQLHTVG 169 (364)
Q Consensus 136 Eve~LKrD~~~L~qELv~LRQqQq~~~~qLq~L~ 169 (364)
.++.|......|..|...|+.....+...+..|.
T Consensus 27 ~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~ 60 (64)
T PF00170_consen 27 YIEELEEKVEELESENEELKKELEQLKKEIQSLK 60 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555666666666666555555555555544
No 101
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=27.57 E-value=3e+02 Score=24.51 Aligned_cols=34 Identities=21% Similarity=0.384 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017908 136 EVEILKRDKNVLMQELVRLRQQQQATDRQLHTVG 169 (364)
Q Consensus 136 Eve~LKrD~~~L~qELv~LRQqQq~~~~qLq~L~ 169 (364)
++..|..++..+-+||..|....+.++.+|..+.
T Consensus 22 ~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~ 55 (143)
T PF12718_consen 22 KVKQLEQENEQKEQEITSLQKKNQQLEEELDKLE 55 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444333
No 102
>PF01519 DUF16: Protein of unknown function DUF16; InterPro: IPR002862 Proteins that contain this domain are of unknown function. It appears to be confined to proteins from Mycoplasma pneumoniae [].; PDB: 2BA2_C.
Probab=27.48 E-value=2.6e+02 Score=24.05 Aligned_cols=43 Identities=21% Similarity=0.215 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017908 134 EEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVME 176 (364)
Q Consensus 134 eeEve~LKrD~~~L~qELv~LRQqQq~~~~qLq~L~qrLq~mE 176 (364)
.+.+..+-.+...|..|+...=+..+.+.+.|+.|..||..||
T Consensus 59 ~e~V~~QGEqIkel~~e~k~qgktL~~I~~~L~~inkRLD~~E 101 (102)
T PF01519_consen 59 TEKVDKQGEQIKELQVEQKAQGKTLQLILKTLQSINKRLDKME 101 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3444444444445554444333344555556666666666554
No 103
>PF14584 DUF4446: Protein of unknown function (DUF4446)
Probab=27.40 E-value=3.1e+02 Score=24.83 Aligned_cols=38 Identities=13% Similarity=0.259 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccc
Q 017908 152 VRLRQQQQATDRQLHTVGQRVQVMEQRQQQMINLSTFL 189 (364)
Q Consensus 152 v~LRQqQq~~~~qLq~L~qrLq~mEqRQqqmms~~~~l 189 (364)
....++...+...+..+.++++.++.+.+..+++..+.
T Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~kvgvv 86 (151)
T PF14584_consen 49 NELFDQIDELKEELEELEKRIEELEEKLRNCVQKVGVV 86 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceEEEE
Confidence 34444555666666666777777777777777644443
No 104
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=27.21 E-value=2.6e+02 Score=30.61 Aligned_cols=17 Identities=24% Similarity=0.374 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 017908 136 EVEILKRDKNVLMQELV 152 (364)
Q Consensus 136 Eve~LKrD~~~L~qELv 152 (364)
+++...++++.|+++..
T Consensus 144 qlE~~qkE~eeL~~~~~ 160 (546)
T PF07888_consen 144 QLEECQKEKEELLKENE 160 (546)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 105
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=27.00 E-value=2.2e+02 Score=25.68 Aligned_cols=42 Identities=17% Similarity=0.309 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017908 136 EVEILKRDKNVLMQEL------------VRLRQQQQATDRQLHTVGQRVQVMEQ 177 (364)
Q Consensus 136 Eve~LKrD~~~L~qEL------------v~LRQqQq~~~~qLq~L~qrLq~mEq 177 (364)
+..+|++|...|.+|+ ++++++....+.+++.+.+.+...+.
T Consensus 41 ~~~~l~~Ei~~l~~E~~~iS~qDeFAkwaKl~Rk~~kl~~el~~~~~~~~~~~~ 94 (161)
T PF04420_consen 41 EQRQLRKEILQLKRELNAISAQDEFAKWAKLNRKLDKLEEELEKLNKSLSSEKS 94 (161)
T ss_dssp HHHHHHHHHHHHHHHHTTS-TTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555554 34555555555555555544444333
No 106
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=26.91 E-value=60 Score=34.81 Aligned_cols=35 Identities=20% Similarity=0.446 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017908 134 EEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVG 169 (364)
Q Consensus 134 eeEve~LKrD~~~L~qELv~LRQqQq~~~~qLq~L~ 169 (364)
..+++.+| +.+.|.+||..|++|+..+..++..+.
T Consensus 24 ~~~~~~~q-kie~L~kql~~Lk~q~~~l~~~v~k~e 58 (489)
T PF11853_consen 24 ADDIDLLQ-KIEALKKQLEELKAQQDDLNDRVDKVE 58 (489)
T ss_pred hhhhHHHH-HHHHHHHHHHHHHHhhcccccccchhh
Confidence 44555555 666677777777777666555555443
No 107
>KOG2196 consensus Nuclear porin [Nuclear structure]
Probab=26.54 E-value=1.7e+02 Score=28.94 Aligned_cols=42 Identities=33% Similarity=0.366 Sum_probs=35.7
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017908 132 GLEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQ 173 (364)
Q Consensus 132 ~LeeEve~LKrD~~~L~qELv~LRQqQq~~~~qLq~L~qrLq 173 (364)
+|..|+.+++.+.+.|-|||.-+--||++++..|..|...+.
T Consensus 117 ~Ly~e~~~vk~~qkrLdq~L~~I~sqQ~ELE~~L~~lE~k~~ 158 (254)
T KOG2196|consen 117 GLYNEVVKVKLDQKRLDQELEFILSQQQELEDLLDPLETKLE 158 (254)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 467788899999999999999999999999999988876544
No 108
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=26.33 E-value=2.7e+02 Score=21.44 Aligned_cols=35 Identities=6% Similarity=0.244 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017908 138 EILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRV 172 (364)
Q Consensus 138 e~LKrD~~~L~qELv~LRQqQq~~~~qLq~L~qrL 172 (364)
.+|..+...+...+..+|.+.+.+...+..|.+.+
T Consensus 3 ~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~env 37 (55)
T PF05377_consen 3 DELENELPRIESSINTVKKENEEISESVEKIEENV 37 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444445555555444444444444333
No 109
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=26.09 E-value=2.3e+02 Score=23.89 Aligned_cols=22 Identities=9% Similarity=0.194 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 017908 155 RQQQQATDRQLHTVGQRVQVME 176 (364)
Q Consensus 155 RQqQq~~~~qLq~L~qrLq~mE 176 (364)
++....++..|..|..++..++
T Consensus 64 ~~dv~~L~l~l~el~G~~~~l~ 85 (106)
T PF10805_consen 64 RDDVHDLQLELAELRGELKELS 85 (106)
T ss_pred HHHHHHHHHHHHHHHhHHHHHH
Confidence 3333333333333333333333
No 110
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=25.67 E-value=2e+02 Score=23.56 Aligned_cols=44 Identities=11% Similarity=0.191 Sum_probs=26.6
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017908 132 GLEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVM 175 (364)
Q Consensus 132 ~LeeEve~LKrD~~~L~qELv~LRQqQq~~~~qLq~L~qrLq~m 175 (364)
.|..++..|+.....|+..+...+.....+...=+.|.+.+.++
T Consensus 20 ~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nL 63 (80)
T PF10224_consen 20 ELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNL 63 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666666666666666666666655555555553
No 111
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=25.54 E-value=3.1e+02 Score=24.17 Aligned_cols=41 Identities=24% Similarity=0.364 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017908 134 EEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQV 174 (364)
Q Consensus 134 eeEve~LKrD~~~L~qELv~LRQqQq~~~~qLq~L~qrLq~ 174 (364)
++-+..|+...+.|.-++.+|+.+...++.++..|...++.
T Consensus 69 ~~~~~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~~ 109 (119)
T COG1382 69 EEAVDELEERKETLELRIKTLEKQEEKLQERLEELQSEIQK 109 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34457777788888888888888887777777776665554
No 112
>PRK09039 hypothetical protein; Validated
Probab=24.84 E-value=2.7e+02 Score=28.16 Aligned_cols=35 Identities=26% Similarity=0.251 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017908 135 EEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVG 169 (364)
Q Consensus 135 eEve~LKrD~~~L~qELv~LRQqQq~~~~qLq~L~ 169 (364)
.++..++........++.+|++|...++.|+..|.
T Consensus 123 ~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le 157 (343)
T PRK09039 123 QELDSEKQVSARALAQVELLNQQIAALRRQLAALE 157 (343)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444333333334444444444444444333
No 113
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=24.79 E-value=2.9e+02 Score=27.99 Aligned_cols=44 Identities=18% Similarity=0.291 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 017908 140 LKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVMEQRQQQMI 183 (364)
Q Consensus 140 LKrD~~~L~qELv~LRQqQq~~~~qLq~L~qrLq~mEqRQqqmm 183 (364)
.+++...|..+++.+++..+.....-..|.++|..+...|+++-
T Consensus 232 QQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~ 275 (306)
T PF04849_consen 232 QQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQ 275 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 33344555555555555555444444556667777666666654
No 114
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=24.68 E-value=4.5e+02 Score=23.80 Aligned_cols=48 Identities=23% Similarity=0.387 Sum_probs=30.9
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017908 132 GLEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVMEQRQ 179 (364)
Q Consensus 132 ~LeeEve~LKrD~~~L~qELv~LRQqQq~~~~qLq~L~qrLq~mEqRQ 179 (364)
..++-++.|++..+.|...+..+.+..+.+...+..+.+.++..-+++
T Consensus 91 ~~~eAie~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~~~q~~ 138 (145)
T COG1730 91 SADEAIEFLKKRIEELEKAIEKLQQALAELAQRIEQLEQEAQQLQQKQ 138 (145)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666777777777776666666666666666666666655554444
No 115
>PF05064 Nsp1_C: Nsp1-like C-terminal region; InterPro: IPR007758 The NSP1-like protein appears to be an essential component of the nuclear pore complex, for example preribosome nuclear export requires the Nup82p-Nup159p-Nsp1p complex. The C-terminal of Nsp1 is involved in binding Nup82 [], probably via coiled-coil formation [, ]. The family is related to the rotavirus nonstructural protein NSP1 which is the least conserved protein in the rotavirus genome. Its function in the replication process is not fully understood.; GO: 0017056 structural constituent of nuclear pore, 0005643 nuclear pore; PDB: 3T97_C.
Probab=24.67 E-value=43 Score=28.73 Aligned_cols=26 Identities=19% Similarity=0.319 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017908 143 DKNVLMQELVRLRQQQQATDRQLHTV 168 (364)
Q Consensus 143 D~~~L~qELv~LRQqQq~~~~qLq~L 168 (364)
....|..++.++...|+.+++.|..+
T Consensus 58 ~I~~L~~~v~~~~~~Q~~ld~~L~~i 83 (116)
T PF05064_consen 58 KISKLYSEVQKAESEQKRLDQELDFI 83 (116)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555543
No 116
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=24.43 E-value=73 Score=33.06 Aligned_cols=37 Identities=16% Similarity=0.241 Sum_probs=27.8
Q ss_pred cHHHHHHHhccCCCCCC----ceEEcCCCCeEEEecCchhh
Q 017908 14 PFLSKIYDMVEDPSTND----IVSWSSSNNSFIVWKVAEFS 50 (364)
Q Consensus 14 ~Fl~KLy~mLed~~~~~----IIsWs~~G~SFvI~d~~~F~ 50 (364)
-|..|-|.+|..-..+. -|.|+|||+..+|||.-.=.
T Consensus 162 i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Ley 202 (447)
T KOG4497|consen 162 ISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEY 202 (447)
T ss_pred HHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhh
Confidence 45677788888655543 38999999999999875433
No 117
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=24.34 E-value=4e+02 Score=23.37 Aligned_cols=46 Identities=17% Similarity=0.315 Sum_probs=25.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017908 133 LEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVMEQR 178 (364)
Q Consensus 133 LeeEve~LKrD~~~L~qELv~LRQqQq~~~~qLq~L~qrLq~mEqR 178 (364)
+.+++..|++........+..+|+++..+.+.+-.+..+++....+
T Consensus 56 i~~~l~~L~~~~~~~~~rl~~~r~r~~~L~hR~l~v~~~~eilr~~ 101 (141)
T PF13874_consen 56 INDKLEELQKHDLETSARLEEARRRHQELSHRLLRVLRKQEILRNR 101 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3344555544444455555666666666666666666555544433
No 118
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=24.30 E-value=2.4e+02 Score=22.37 Aligned_cols=45 Identities=22% Similarity=0.383 Sum_probs=26.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017908 133 LEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVMEQ 177 (364)
Q Consensus 133 LeeEve~LKrD~~~L~qELv~LRQqQq~~~~qLq~L~qrLq~mEq 177 (364)
|.+|-+.|.+..-.+..-+-+||++....+..+..+..++...+.
T Consensus 17 L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~ 61 (74)
T PF12329_consen 17 LMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEK 61 (74)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555666666666666666666665555443
No 119
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=23.94 E-value=4.1e+02 Score=27.58 Aligned_cols=65 Identities=15% Similarity=0.347 Sum_probs=36.1
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHH-hhcccccccccCCCCc
Q 017908 132 GLEEEVEILKRDKNVLMQELVRLRQ-----------QQQATDRQLHTVGQRVQVMEQRQQ-QMINLSTFLIDNIPSA 196 (364)
Q Consensus 132 ~LeeEve~LKrD~~~L~qELv~LRQ-----------qQq~~~~qLq~L~qrLq~mEqRQq-qmms~~~~ll~~~~~~ 196 (364)
.+..+++.|+.+.+.+-+++..+++ +-..+..++..+.+.+..++.... .++..++++-.++|-+
T Consensus 41 ~~~~~~~~l~~erN~~sk~i~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~lPN~~~~~vP~g 117 (418)
T TIGR00414 41 KLLSEIEELQAKRNELSKQIGKAKGQKKDKIEEIKKELKELKEELTELSAALKALEAELQDKLLSIPNIPHESVPVG 117 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccCCCC
Confidence 4566788888888888887765432 223333344444444444443333 3444566666666644
No 120
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=23.91 E-value=2.4e+02 Score=27.07 Aligned_cols=26 Identities=23% Similarity=0.305 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017908 136 EVEILKRDKNVLMQELVRLRQQQQAT 161 (364)
Q Consensus 136 Eve~LKrD~~~L~qELv~LRQqQq~~ 161 (364)
.+.+++++|+.|.+|+..|+.++...
T Consensus 70 ~~~~l~~en~~L~~e~~~l~~~~~~~ 95 (276)
T PRK13922 70 SLFDLREENEELKKELLELESRLQEL 95 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666666666666666655433
No 121
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=23.89 E-value=4.7e+02 Score=22.77 Aligned_cols=33 Identities=27% Similarity=0.425 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017908 136 EVEILKRDKNVLMQELVRLRQQQQATDRQLHTV 168 (364)
Q Consensus 136 Eve~LKrD~~~L~qELv~LRQqQq~~~~qLq~L 168 (364)
.+++|+.+.+.+.+|+..+......+..++..+
T Consensus 74 ~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~ 106 (151)
T PF11559_consen 74 DVERLKEQLEELERELASAEEKERQLQKQLKSL 106 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444443333333333333
No 122
>PLN02320 seryl-tRNA synthetase
Probab=23.84 E-value=3.8e+02 Score=28.97 Aligned_cols=64 Identities=17% Similarity=0.310 Sum_probs=35.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHH-HHHhhcccccccccCCCCc
Q 017908 133 LEEEVEILKRDKNVLMQELVR---------LRQQQQATDRQLHTVGQRVQVMEQ-RQQQMINLSTFLIDNIPSA 196 (364)
Q Consensus 133 LeeEve~LKrD~~~L~qELv~---------LRQqQq~~~~qLq~L~qrLq~mEq-RQqqmms~~~~ll~~~~~~ 196 (364)
+..+++.|+.+.+.+-+++.. |+++-+.+..+|..|.+.+..++. .++.++..++++-..+|-+
T Consensus 105 ~~~~~~~lr~ern~~sk~i~~~~~~~~~~~l~~~~k~lk~~i~~le~~~~~~~~~l~~~~l~iPN~~h~~VP~G 178 (502)
T PLN02320 105 LQKEVERLRAERNAVANKMKGKLEPSERQALVEEGKNLKEGLVTLEEDLVKLTDELQLEAQSIPNMTHPDVPVG 178 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccCCCC
Confidence 456677777777777776643 223334444555555555555543 3333444555555556543
No 123
>COG3159 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.72 E-value=1.5e+02 Score=28.60 Aligned_cols=23 Identities=17% Similarity=0.260 Sum_probs=18.8
Q ss_pred ceecCCCcccCCcccchhhhccC
Q 017908 83 YEFANEGFLRGQKHLLKSISRRK 105 (364)
Q Consensus 83 ~eF~H~~F~Rg~~~LL~~IkRkk 105 (364)
|-+.||.|.+.+++|+..|.=+.
T Consensus 12 yL~~hPeFf~~h~~Ll~~L~lph 34 (218)
T COG3159 12 YLRQHPEFFIQHAELLEELRLPH 34 (218)
T ss_pred HHHhCcHHHHhCHHHHHHcCCCC
Confidence 44679999999999999887543
No 124
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=23.57 E-value=4.6e+02 Score=23.52 Aligned_cols=35 Identities=20% Similarity=0.366 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017908 134 EEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTV 168 (364)
Q Consensus 134 eeEve~LKrD~~~L~qELv~LRQqQq~~~~qLq~L 168 (364)
.+++..+++....+.+|+..+++..+.....++.+
T Consensus 129 ~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~ 163 (191)
T PF04156_consen 129 EERLDSLDESIKELEKEIRELQKELQDSREEVQEL 163 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666666666663333333333333
No 125
>smart00338 BRLZ basic region leucin zipper.
Probab=23.11 E-value=3.3e+02 Score=20.45 Aligned_cols=34 Identities=29% Similarity=0.393 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017908 136 EVEILKRDKNVLMQELVRLRQQQQATDRQLHTVG 169 (364)
Q Consensus 136 Eve~LKrD~~~L~qELv~LRQqQq~~~~qLq~L~ 169 (364)
.+..|....+.|..|...|+.+...+..++..|.
T Consensus 27 ~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk 60 (65)
T smart00338 27 EIEELERKVEQLEAENERLKKEIERLRRELEKLK 60 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555565555555555555555444
No 126
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=23.09 E-value=4e+02 Score=25.70 Aligned_cols=39 Identities=36% Similarity=0.531 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017908 134 EEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRV 172 (364)
Q Consensus 134 eeEve~LKrD~~~L~qELv~LRQqQq~~~~qLq~L~qrL 172 (364)
.+++..+++..+.|..|+..|+.+...++.+|..+..++
T Consensus 215 ~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~ 253 (312)
T PF00038_consen 215 KEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRL 253 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHH
Confidence 445556666666666666666665555555555554433
No 127
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=22.98 E-value=3.8e+02 Score=26.75 Aligned_cols=41 Identities=22% Similarity=0.285 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017908 136 EVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVME 176 (364)
Q Consensus 136 Eve~LKrD~~~L~qELv~LRQqQq~~~~qLq~L~qrLq~mE 176 (364)
+++.++++...|..|+..+++.......+.+.+...+...+
T Consensus 224 ~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~ 264 (325)
T PF08317_consen 224 EIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAE 264 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444445555555555555555555555555544444
No 128
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=22.93 E-value=4.8e+02 Score=22.73 Aligned_cols=34 Identities=24% Similarity=0.457 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017908 135 EEVEILKRDKNVLMQELVRLRQQQQATDRQLHTV 168 (364)
Q Consensus 135 eEve~LKrD~~~L~qELv~LRQqQq~~~~qLq~L 168 (364)
.++..+..|+..|...+.+|+.+....+..+...
T Consensus 59 ~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~ 92 (151)
T PF11559_consen 59 DKLRRLRSDIERLQNDVERLKEQLEELERELASA 92 (151)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444433
No 129
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=22.86 E-value=4.2e+02 Score=26.51 Aligned_cols=30 Identities=33% Similarity=0.474 Sum_probs=17.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017908 133 LEEEVEILKRDKNVLMQELVRLRQQQQATD 162 (364)
Q Consensus 133 LeeEve~LKrD~~~L~qELv~LRQqQq~~~ 162 (364)
+..+++.|.++.+.|.+|+..++.+...++
T Consensus 62 l~~eL~~LE~e~~~l~~el~~le~e~~~l~ 91 (314)
T PF04111_consen 62 LLQELEELEKEREELDQELEELEEELEELD 91 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666666665444433
No 130
>PLN02678 seryl-tRNA synthetase
Probab=22.78 E-value=4.4e+02 Score=27.94 Aligned_cols=65 Identities=15% Similarity=0.323 Sum_probs=35.0
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHh-hcccccccccCCCCc
Q 017908 132 GLEEEVEILKRDKNVLMQELVRLR----------QQQQATDRQLHTVGQRVQVMEQRQQQ-MINLSTFLIDNIPSA 196 (364)
Q Consensus 132 ~LeeEve~LKrD~~~L~qELv~LR----------QqQq~~~~qLq~L~qrLq~mEqRQqq-mms~~~~ll~~~~~~ 196 (364)
.+..+++.|+.+.+.+-.++..++ ++.+.+..++..|...+..+++.-.+ ++..++++-..+|-+
T Consensus 44 ~l~~~~e~lr~erN~~sk~I~~~k~~~~~~~~l~~~~~~Lk~ei~~le~~~~~~~~~l~~~~~~iPNi~~~~VP~G 119 (448)
T PLN02678 44 QRQFELDSLRKEFNKLNKEVAKLKIAKEDATELIAETKELKKEITEKEAEVQEAKAALDAKLKTIGNLVHDSVPVS 119 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccCCCC
Confidence 355667777777777777775432 22334444444444445444433333 333556655666644
No 131
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=22.57 E-value=2.7e+02 Score=29.37 Aligned_cols=33 Identities=27% Similarity=0.462 Sum_probs=17.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017908 133 LEEEVEILKRDKNVLMQELVRLRQQQQATDRQLH 166 (364)
Q Consensus 133 LeeEve~LKrD~~~L~qELv~LRQqQq~~~~qLq 166 (364)
|+++ ..|++++..|..|+...+++.+.+.-++.
T Consensus 348 LEEK-aaLrkerd~L~keLeekkreleql~~q~~ 380 (442)
T PF06637_consen 348 LEEK-AALRKERDSLAKELEEKKRELEQLKMQLA 380 (442)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4433 45666666666666655555444444443
No 132
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=22.25 E-value=3.7e+02 Score=24.70 Aligned_cols=44 Identities=14% Similarity=0.262 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017908 134 EEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVMEQR 178 (364)
Q Consensus 134 eeEve~LKrD~~~L~qELv~LRQqQq~~~~qLq~L~qrLq~mEqR 178 (364)
...++.|. .+..+.++|..|+++...++.++..++..|..+++.
T Consensus 15 ~~~L~~l~-~hq~~~~~I~~L~~e~~~ld~~i~~~~~~L~~~~~~ 58 (188)
T PF10018_consen 15 SSALEELQ-EHQENQARIQQLRAEIEELDEQIRDILKQLKEARKE 58 (188)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444442 344556677777777777777777777777766554
No 133
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=22.22 E-value=3.2e+02 Score=29.41 Aligned_cols=46 Identities=9% Similarity=0.194 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 017908 137 VEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVMEQRQQQM 182 (364)
Q Consensus 137 ve~LKrD~~~L~qELv~LRQqQq~~~~qLq~L~qrLq~mEqRQqqm 182 (364)
+++-+...+.|.++|..||++.+.+..+.+.+.++|+.+|...+++
T Consensus 71 LteqQ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~L 116 (475)
T PRK13729 71 TTEMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAAL 116 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence 3344444556667777777666666677777777777666554444
No 134
>PRK14011 prefoldin subunit alpha; Provisional
Probab=22.15 E-value=5e+02 Score=23.34 Aligned_cols=51 Identities=24% Similarity=0.334 Sum_probs=31.4
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhh
Q 017908 132 GLEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVG----QRVQVMEQRQQQM 182 (364)
Q Consensus 132 ~LeeEve~LKrD~~~L~qELv~LRQqQq~~~~qLq~L~----qrLq~mEqRQqqm 182 (364)
.+++-++.+++..+.|......|....+....++..+. ++++.+++|.++.
T Consensus 85 ~~~eA~~~~~~ri~~l~~~~~~l~~~i~~~~~~~~~l~~~L~~k~~~~~~~~~~~ 139 (144)
T PRK14011 85 DVSEVIEDFKKSVEELDKTKKEGNKKIEELNKEITKLRKELEKRAQAIEQRQAQM 139 (144)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 45666677777777666666666665555555555554 4556666665543
No 135
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=22.07 E-value=3.8e+02 Score=26.19 Aligned_cols=36 Identities=25% Similarity=0.385 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017908 136 EVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQR 171 (364)
Q Consensus 136 Eve~LKrD~~~L~qELv~LRQqQq~~~~qLq~L~qr 171 (364)
+.+.++++...+..|+..++.+...++..|+.+..|
T Consensus 39 e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r 74 (239)
T COG1579 39 ELEALNKALEALEIELEDLENQVSQLESEIQEIRER 74 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444333
No 136
>PHA01750 hypothetical protein
Probab=22.03 E-value=3e+02 Score=22.17 Aligned_cols=32 Identities=13% Similarity=0.274 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017908 145 NVLMQELVRLRQQQQATDRQLHTVGQRVQVME 176 (364)
Q Consensus 145 ~~L~qELv~LRQqQq~~~~qLq~L~qrLq~mE 176 (364)
+...+|+..|+.+.+.+.....++.+.+...+
T Consensus 38 eIV~~ELdNL~~ei~~~kikqDnl~~qv~eik 69 (75)
T PHA01750 38 EIVNSELDNLKTEIEELKIKQDELSRQVEEIK 69 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 45566777777766666666666555554443
No 137
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=22.00 E-value=76 Score=34.07 Aligned_cols=27 Identities=22% Similarity=0.350 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017908 150 ELVRLRQQQQATDRQLHTVGQRVQVME 176 (364)
Q Consensus 150 ELv~LRQqQq~~~~qLq~L~qrLq~mE 176 (364)
+|..|++|++++++|+..|..|+..+|
T Consensus 32 kie~L~kql~~Lk~q~~~l~~~v~k~e 58 (489)
T PF11853_consen 32 KIEALKKQLEELKAQQDDLNDRVDKVE 58 (489)
T ss_pred HHHHHHHHHHHHHHhhcccccccchhh
Confidence 444444444444444444444444443
No 138
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=21.91 E-value=4.1e+02 Score=21.08 Aligned_cols=37 Identities=14% Similarity=0.388 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017908 136 EVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRV 172 (364)
Q Consensus 136 Eve~LKrD~~~L~qELv~LRQqQq~~~~qLq~L~qrL 172 (364)
-+..|+..+..+..++..++.........+..|..|+
T Consensus 34 ~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l 70 (74)
T PF12329_consen 34 TIKKLRAKIKELEKQIKELKKKLEELEKELESLEERL 70 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444444444444444444444444444443
No 139
>PRK10698 phage shock protein PspA; Provisional
Probab=21.89 E-value=4.5e+02 Score=25.00 Aligned_cols=39 Identities=13% Similarity=0.155 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017908 139 ILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVMEQ 177 (364)
Q Consensus 139 ~LKrD~~~L~qELv~LRQqQq~~~~qLq~L~qrLq~mEq 177 (364)
........|...+.+|+.+.......-..|..|.+..+.
T Consensus 110 ~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~a 148 (222)
T PRK10698 110 LVDETLARMKKEIGELENKLSETRARQQALMLRHQAASS 148 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444444444444444444444555554443
No 140
>PLN02281 chlorophyllide a oxygenase
Probab=21.85 E-value=3.5e+02 Score=29.50 Aligned_cols=39 Identities=23% Similarity=0.318 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017908 138 EILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVME 176 (364)
Q Consensus 138 e~LKrD~~~L~qELv~LRQqQq~~~~qLq~L~qrLq~mE 176 (364)
+.|+++..-|.+||.+..+|.+..+..+..-..+|..||
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (536)
T PLN02281 124 GTVKKELAGLQEELSKAHQQVHISEARVSTALDKLAHME 162 (536)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Confidence 344444444555555544454444444444444455554
No 141
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=21.83 E-value=2.2e+02 Score=25.69 Aligned_cols=37 Identities=14% Similarity=0.220 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 017908 146 VLMQELVRLRQQQQATDRQLHTVGQRVQVMEQRQQQM 182 (364)
Q Consensus 146 ~L~qELv~LRQqQq~~~~qLq~L~qrLq~mEqRQqqm 182 (364)
.|..|-..|+|+...+...+..|...+...+.+.+++
T Consensus 78 eLE~~k~~L~qqv~~L~~e~s~~~~E~da~k~k~e~l 114 (135)
T KOG4196|consen 78 ELEKEKAELQQQVEKLKEENSRLRRELDAYKSKYEAL 114 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444555555554444
No 142
>PF13942 Lipoprotein_20: YfhG lipoprotein
Probab=21.81 E-value=4.4e+02 Score=24.82 Aligned_cols=45 Identities=33% Similarity=0.327 Sum_probs=30.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017908 133 LEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVMEQ 177 (364)
Q Consensus 133 LeeEve~LKrD~~~L~qELv~LRQqQq~~~~qLq~L~qrLq~mEq 177 (364)
|.+|-.+.++=.+.--.|+.+||++|..++.+|..-..+|+++-.
T Consensus 114 L~eEr~Ry~rLQqssD~~lD~Lr~qq~~Lq~qL~~T~RKLEnLTD 158 (179)
T PF13942_consen 114 LSEERARYQRLQQSSDSELDALRQQQQRLQYQLDTTTRKLENLTD 158 (179)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 444433333333334457888999999999999888888887654
No 143
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=21.67 E-value=4.2e+02 Score=22.07 Aligned_cols=33 Identities=18% Similarity=0.319 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017908 136 EVEILKRDKNVLMQELVRLRQQQQATDRQLHTV 168 (364)
Q Consensus 136 Eve~LKrD~~~L~qELv~LRQqQq~~~~qLq~L 168 (364)
++.++++++..|..|...|+.+....+.++.+-
T Consensus 24 k~~ka~~~~~kL~~en~qlk~Ek~~~~~qvkn~ 56 (87)
T PF10883_consen 24 KVKKAKKQNAKLQKENEQLKTEKAVAETQVKNA 56 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556777777777777777777766666666543
No 144
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=20.94 E-value=3.4e+02 Score=24.55 Aligned_cols=43 Identities=21% Similarity=0.288 Sum_probs=35.3
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017908 132 GLEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQV 174 (364)
Q Consensus 132 ~LeeEve~LKrD~~~L~qELv~LRQqQq~~~~qLq~L~qrLq~ 174 (364)
-+..+++.|.+-.+.|.+++..|-+....+..+++.+.++...
T Consensus 98 ~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~~~q~~~~ 140 (145)
T COG1730 98 FLKKRIEELEKAIEKLQQALAELAQRIEQLEQEAQQLQQKQAA 140 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678889999999999999999999888888888877766543
No 145
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=20.89 E-value=4.5e+02 Score=22.64 Aligned_cols=42 Identities=19% Similarity=0.297 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017908 134 EEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVM 175 (364)
Q Consensus 134 eeEve~LKrD~~~L~qELv~LRQqQq~~~~qLq~L~qrLq~m 175 (364)
..+++.|....+.|.+++..|.++...+...+..+..-+..+
T Consensus 5 ~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~e~~~~~e~l 46 (140)
T PRK03947 5 EQELEELAAQLQALQAQIEALQQQLEELQASINELDTAKETL 46 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666666666666666666666666666665555444443
No 146
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=20.31 E-value=3e+02 Score=23.77 Aligned_cols=19 Identities=32% Similarity=0.420 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 017908 137 VEILKRDKNVLMQELVRLR 155 (364)
Q Consensus 137 ve~LKrD~~~L~qELv~LR 155 (364)
+..||.....|..|.++|+
T Consensus 24 l~~LK~~~~el~EEN~~L~ 42 (110)
T PRK13169 24 LGALKKQLAELLEENTALR 42 (110)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 147
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=20.25 E-value=4.2e+02 Score=29.03 Aligned_cols=11 Identities=27% Similarity=0.450 Sum_probs=3.9
Q ss_pred HHHHHHHHHHH
Q 017908 140 LKRDKNVLMQE 150 (364)
Q Consensus 140 LKrD~~~L~qE 150 (364)
|.+.+..|..|
T Consensus 155 L~~~~~~Le~e 165 (546)
T PF07888_consen 155 LLKENEQLEEE 165 (546)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 148
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=20.13 E-value=3.8e+02 Score=26.96 Aligned_cols=20 Identities=50% Similarity=0.674 Sum_probs=10.0
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 017908 133 LEEEVEILKRDKNVLMQELV 152 (364)
Q Consensus 133 LeeEve~LKrD~~~L~qELv 152 (364)
|.+.++.|+.|.+.|...+.
T Consensus 149 L~~~~~~l~~D~~~L~~~~~ 168 (312)
T smart00787 149 LDENLEGLKEDYKLLMKELE 168 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555544443
No 149
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=20.04 E-value=5.2e+02 Score=23.83 Aligned_cols=33 Identities=15% Similarity=0.302 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017908 136 EVEILKRDKNVLMQELVRLRQQQQATDRQLHTV 168 (364)
Q Consensus 136 Eve~LKrD~~~L~qELv~LRQqQq~~~~qLq~L 168 (364)
++..|+.....+...+..|+.....+...|..+
T Consensus 99 ~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~ 131 (221)
T PF04012_consen 99 QAERLEQQLDQAEAQVEKLKEQLEELEAKLEEL 131 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444333
Done!