Query 017910
Match_columns 364
No_of_seqs 339 out of 1732
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 06:53:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017910.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017910hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3q8k_A Flap endonuclease 1; he 100.0 5.2E-72 1.8E-76 549.6 30.2 290 2-295 52-341 (341)
2 1ul1_X Flap endonuclease-1; pr 100.0 1.1E-72 3.6E-77 562.0 19.4 299 2-301 52-350 (379)
3 3ory_A Flap endonuclease 1; hy 100.0 1.9E-71 6.5E-76 549.4 23.8 289 1-296 60-361 (363)
4 2izo_A FEN1, flap structure-sp 100.0 1.4E-67 4.7E-72 519.4 21.0 289 2-294 44-346 (346)
5 1b43_A Protein (FEN-1); nuclea 100.0 2.3E-65 7.8E-70 502.5 21.2 283 2-295 47-339 (340)
6 1rxw_A Flap structure-specific 100.0 2.5E-64 8.7E-69 494.3 26.1 280 2-294 47-336 (336)
7 1a76_A Flap endonuclease-1 pro 100.0 2.8E-65 9.6E-70 499.2 16.9 277 2-295 47-326 (326)
8 3qe9_Y Exonuclease 1; exonucle 100.0 1E-51 3.6E-56 406.9 18.2 285 5-301 47-349 (352)
9 1exn_A 5'-exonuclease, 5'-nucl 100.0 3.2E-45 1.1E-49 351.1 9.3 208 4-243 36-265 (290)
10 1bgx_T TAQ DNA polymerase; DNA 100.0 9.2E-47 3.2E-51 406.6 -10.4 233 2-267 33-279 (832)
11 3h7i_A Ribonuclease H, RNAse H 100.0 2.3E-30 8E-35 247.4 7.5 163 2-193 32-211 (305)
12 2y35_A LD22664P; hydrolase-DNA 97.6 0.00056 1.9E-08 75.9 14.6 96 97-192 161-298 (1140)
13 3pie_A 5'->3' exoribonuclease 97.5 0.00079 2.7E-08 74.3 13.2 178 15-193 63-302 (1155)
14 3fqd_A Protein DHP1, 5'-3' exo 97.0 0.0041 1.4E-07 66.8 11.6 95 98-192 195-349 (899)
15 2a1j_A DNA repair endonuclease 96.7 0.00073 2.5E-08 49.7 2.5 26 185-210 7-32 (63)
16 1z00_B DNA repair endonuclease 96.3 0.0024 8.1E-08 49.8 3.1 26 185-210 21-46 (84)
17 1z00_A DNA excision repair pro 95.0 0.018 6E-07 44.7 3.6 26 185-210 22-47 (89)
18 1kft_A UVRC, excinuclease ABC 94.9 0.0094 3.2E-07 45.2 1.9 27 185-211 27-53 (78)
19 1x2i_A HEF helicase/nuclease; 94.9 0.019 6.5E-07 42.6 3.6 25 186-210 18-42 (75)
20 2a1j_B DNA excision repair pro 94.5 0.026 8.8E-07 44.0 3.5 25 186-210 36-60 (91)
21 2nrt_A Uvrabc system protein C 94.2 0.026 8.8E-07 51.6 3.2 26 185-210 171-196 (220)
22 3c65_A Uvrabc system protein C 91.3 0.038 1.3E-06 50.7 0.0 27 184-210 175-201 (226)
23 2bgw_A XPF endonuclease; hydro 88.6 0.2 6.7E-06 45.1 2.5 25 186-210 166-190 (219)
24 2ztd_A Holliday junction ATP-d 87.8 1.4 4.9E-05 39.7 7.6 108 162-278 73-188 (212)
25 1ixr_A Holliday junction DNA h 87.0 0.28 9.6E-06 43.7 2.4 87 186-278 76-170 (191)
26 4gfj_A Topoisomerase V; helix- 86.2 0.43 1.5E-05 47.4 3.4 25 186-210 472-496 (685)
27 1cuk_A RUVA protein; DNA repai 83.8 0.48 1.6E-05 42.5 2.3 18 187-204 78-95 (203)
28 1s5l_U Photosystem II 12 kDa e 75.8 0.66 2.2E-05 39.0 0.4 24 186-209 67-92 (134)
29 1vq8_Y 50S ribosomal protein L 74.2 0.64 2.2E-05 42.8 0.0 25 185-209 18-43 (241)
30 2owo_A DNA ligase; protein-DNA 68.6 2.6 9E-05 44.3 3.1 25 185-209 515-539 (671)
31 3sgi_A DNA ligase; HET: DNA AM 67.8 1.1 3.7E-05 46.7 0.0 27 185-211 532-558 (615)
32 3maj_A DNA processing chain A; 67.5 7.1 0.00024 38.3 5.7 41 167-213 17-57 (382)
33 2bcq_A DNA polymerase lambda; 66.6 3.4 0.00012 39.7 3.3 26 186-211 100-126 (335)
34 2ziu_A MUS81 protein; helix-ha 66.6 4.2 0.00014 38.3 3.8 29 186-214 241-269 (311)
35 2w9m_A Polymerase X; SAXS, DNA 66.2 7 0.00024 40.2 5.7 26 186-211 101-127 (578)
36 2duy_A Competence protein come 65.9 2.8 9.6E-05 30.9 2.0 17 186-202 31-47 (75)
37 2fmp_A DNA polymerase beta; nu 63.4 3.4 0.00012 39.6 2.6 25 186-210 102-127 (335)
38 1jms_A Terminal deoxynucleotid 63.0 4.1 0.00014 39.8 3.1 25 186-210 125-150 (381)
39 3c1y_A DNA integrity scanning 62.5 3.5 0.00012 40.4 2.4 25 187-211 320-344 (377)
40 2i5h_A Hypothetical protein AF 61.3 5.7 0.0002 35.5 3.4 47 166-212 111-167 (205)
41 3b0x_A DNA polymerase beta fam 61.0 5.4 0.00018 41.0 3.7 27 186-212 97-125 (575)
42 2ihm_A POL MU, DNA polymerase 60.8 4.5 0.00016 39.2 2.9 24 186-209 106-130 (360)
43 3arc_U Photosystem II 12 kDa e 60.1 2.2 7.6E-05 33.7 0.4 23 186-208 30-54 (97)
44 1dgs_A DNA ligase; AMP complex 60.0 4.1 0.00014 42.8 2.6 25 185-209 510-534 (667)
45 4glx_A DNA ligase; inhibitor, 55.1 7.7 0.00026 40.1 3.6 14 89-102 241-254 (586)
46 2ztd_A Holliday junction ATP-d 48.3 8.7 0.0003 34.5 2.4 34 168-203 109-144 (212)
47 2g3q_A Protein YBL047C; endocy 47.7 13 0.00043 24.3 2.6 26 250-277 2-27 (43)
48 3b0x_A DNA polymerase beta fam 47.3 14 0.00049 37.7 4.2 39 160-201 108-147 (575)
49 3vdp_A Recombination protein R 43.7 9.5 0.00032 34.3 1.9 15 186-200 30-44 (212)
50 2edu_A Kinesin-like protein KI 40.3 14 0.00047 28.6 2.2 17 186-202 44-60 (98)
51 1ixr_A Holliday junction DNA h 39.7 14 0.00049 32.5 2.4 19 185-203 110-128 (191)
52 1vdd_A Recombination protein R 38.4 13 0.00044 33.8 1.9 16 186-201 16-31 (228)
53 2dak_A Ubiquitin carboxyl-term 38.1 35 0.0012 24.2 3.9 26 250-277 7-32 (63)
54 2ekk_A UBA domain from E3 ubiq 37.2 27 0.00093 23.2 3.0 26 250-277 7-32 (47)
55 3umv_A Deoxyribodipyrimidine p 37.2 47 0.0016 33.4 6.1 31 87-118 97-127 (506)
56 1cuk_A RUVA protein; DNA repai 33.0 19 0.00066 31.9 2.2 17 186-202 112-128 (203)
57 2dag_A Ubiquitin carboxyl-term 32.5 43 0.0015 24.7 3.7 27 250-278 7-33 (74)
58 3fhg_A Mjogg, N-glycosylase/DN 32.1 19 0.00066 31.7 2.0 16 186-201 121-136 (207)
59 2xry_A Deoxyribodipyrimidine p 31.4 77 0.0026 31.4 6.5 32 87-118 94-125 (482)
60 1wji_A Tudor domain containing 31.2 53 0.0018 23.5 3.9 26 250-277 7-32 (63)
61 2k6x_A Sigma-A, RNA polymerase 31.1 67 0.0023 23.3 4.6 43 62-104 17-62 (72)
62 2zix_A Crossover junction endo 30.1 5.4 0.00019 37.5 -2.1 29 186-214 237-265 (307)
63 4glx_A DNA ligase; inhibitor, 29.9 32 0.0011 35.5 3.5 26 185-210 515-540 (586)
64 1rvv_A Riboflavin synthase; tr 29.5 68 0.0023 27.2 4.9 44 82-125 26-76 (154)
65 1pu6_A 3-methyladenine DNA gly 28.9 23 0.0008 31.5 2.0 16 186-201 125-140 (218)
66 1z96_A DNA-damage, UBA-domain 28.8 73 0.0025 19.8 3.9 26 251-277 2-27 (40)
67 1veg_A NEDD8 ultimate buster-1 28.5 56 0.0019 24.9 3.8 27 249-277 26-52 (83)
68 3r8n_M 30S ribosomal protein S 28.4 41 0.0014 27.1 3.2 17 187-203 21-37 (114)
69 3fhf_A Mjogg, N-glycosylase/DN 28.4 28 0.00095 31.1 2.4 16 186-201 129-144 (214)
70 1wiv_A UBP14, ubiquitin-specif 28.3 59 0.002 23.9 3.8 27 249-277 26-52 (73)
71 1hqk_A 6,7-dimethyl-8-ribityll 28.1 71 0.0024 27.1 4.8 44 82-125 26-76 (154)
72 3nq4_A 6,7-dimethyl-8-ribityll 27.9 52 0.0018 28.0 3.9 44 82-125 26-77 (156)
73 3n0u_A Probable N-glycosylase/ 27.7 24 0.00083 31.6 1.9 18 186-203 134-151 (219)
74 1ify_A HHR23A, UV excision rep 27.6 35 0.0012 23.0 2.3 25 251-277 7-31 (49)
75 3m66_A Mterf3, mterf domain-co 27.5 83 0.0028 28.3 5.6 107 160-277 46-171 (270)
76 2qip_A Protein of unknown func 27.4 86 0.0029 26.1 5.3 49 87-135 63-125 (165)
77 2crn_A Ubash3A protein; compac 27.1 30 0.001 24.9 1.9 27 249-277 6-32 (64)
78 1kz1_A 6,7-dimethyl-8-ribityll 26.7 76 0.0026 27.1 4.7 44 82-125 31-82 (159)
79 1kea_A Possible G-T mismatches 26.5 27 0.00094 31.0 2.0 16 186-201 119-134 (221)
80 3iz6_M 40S ribosomal protein S 26.4 11 0.00037 32.2 -0.7 17 187-203 33-49 (152)
81 1di0_A Lumazine synthase; tran 26.3 44 0.0015 28.5 3.2 44 82-125 24-74 (158)
82 1kg2_A A/G-specific adenine gl 26.1 28 0.00096 31.0 2.0 15 186-200 113-127 (225)
83 3v32_B Ribonuclease ZC3H12A; r 26.1 1.8E+02 0.0063 25.2 7.2 34 95-129 92-134 (185)
84 2h56_A DNA-3-methyladenine gly 26.1 28 0.00096 31.3 2.0 15 186-200 142-156 (233)
85 3ix7_A Uncharacterized protein 25.8 2.4E+02 0.0082 23.1 7.6 42 88-130 63-107 (134)
86 1vg5_A RSGI RUH-014, rhomboid 25.3 82 0.0028 23.3 4.1 27 249-277 26-52 (73)
87 1c2y_A Protein (lumazine synth 25.3 76 0.0026 27.0 4.5 44 82-125 27-76 (156)
88 2csb_A Topoisomerase V, TOP61; 24.6 46 0.0016 31.1 3.2 103 157-266 352-491 (519)
89 2wq7_A RE11660P; lyase-DNA com 24.5 1.4E+02 0.0047 30.1 7.1 13 190-202 245-257 (543)
90 3tvs_A Cryptochrome-1; circadi 24.3 96 0.0033 31.4 5.8 33 86-118 62-97 (538)
91 2obx_A DMRL synthase 1, 6,7-di 24.2 48 0.0016 28.2 3.0 44 82-125 25-75 (157)
92 4fp9_B Mterf domain-containing 24.2 2.5E+02 0.0086 26.5 8.4 103 162-277 53-172 (335)
93 1whc_A RSGI RUH-027, UBA/UBX 3 24.0 46 0.0016 23.8 2.4 26 250-277 7-32 (64)
94 1orn_A Endonuclease III; DNA r 23.4 34 0.0012 30.6 2.0 15 186-200 117-131 (226)
95 1vek_A UBP14, ubiquitin-specif 23.3 80 0.0027 23.9 3.8 26 250-277 27-52 (84)
96 2abk_A Endonuclease III; DNA-r 23.2 33 0.0011 30.2 1.9 15 187-201 114-128 (211)
97 2dai_A Ubadc1, ubiquitin assoc 23.2 79 0.0027 23.9 3.8 26 250-277 27-52 (83)
98 1whz_A Hypothetical protein; a 22.8 1.9E+02 0.0065 20.4 5.7 65 106-174 5-69 (70)
99 3s6i_A DNA-3-methyladenine gly 22.3 37 0.0013 30.4 2.0 15 186-200 143-157 (228)
100 2cpw_A CBL-interacting protein 21.7 47 0.0016 23.8 2.1 25 251-277 18-42 (64)
101 2zvk_U DNA polymerase ETA, pro 21.5 14 0.00047 21.8 -0.7 12 288-299 10-21 (26)
102 2yg9_A DNA-3-methyladenine gly 21.4 39 0.0013 30.1 2.0 15 186-200 150-164 (225)
103 3i0w_A 8-oxoguanine-DNA-glycos 21.3 39 0.0013 31.4 2.0 15 186-200 215-229 (290)
104 1w8i_A Putative VAPC ribonucle 21.1 1.1E+02 0.0039 24.7 4.8 50 81-135 77-130 (156)
105 1ejb_A Lumazine synthase; anal 20.8 1.4E+02 0.0046 25.7 5.2 44 82-125 30-85 (168)
106 4b21_A Probable DNA-3-methylad 20.7 41 0.0014 30.2 2.0 15 186-200 154-168 (232)
107 3mk7_B Cytochrome C oxidase, C 20.5 51 0.0018 29.3 2.5 33 88-120 154-197 (203)
108 3m66_A Mterf3, mterf domain-co 20.4 1E+02 0.0035 27.7 4.7 105 161-276 11-134 (270)
109 1mpg_A ALKA, 3-methyladenine D 20.2 42 0.0014 30.9 2.0 15 186-200 211-225 (282)
110 2jhn_A ALKA, 3-methyladenine D 20.1 43 0.0015 31.1 2.0 37 163-201 176-229 (295)
No 1
>3q8k_A Flap endonuclease 1; helix-3 turn-helix, hydrophobic wedge, 3' flap binding site, hydrolase-DNA complex, DNA repair, replication; HET: DNA; 2.20A {Homo sapiens} PDB: 3q8l_A* 3q8m_A*
Probab=100.00 E-value=5.2e-72 Score=549.59 Aligned_cols=290 Identities=53% Similarity=0.977 Sum_probs=276.4
Q ss_pred CcCCCCCchhHHHHHHHHHHHHHHcCCCcEEEEeCCCCchhhHHHHHHHhhhhhchHHHHHHHHcCCHHHHHHHhccccc
Q 017910 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVK 81 (364)
Q Consensus 2 L~~~~G~~Tsal~G~~~r~~~ll~~gi~Pv~VFDG~~p~~K~~~~~~rk~~R~~~~~~l~~a~~~g~~~~~~k~~~r~~~ 81 (364)
|+|++|++|+|++||++|+++|++++++|+|||||.+|++|++++++||++|+++.+.+.+|++.|+++++.+|++|+++
T Consensus 52 l~~~~G~~T~al~g~~~~~~~ll~~~i~P~~VFDg~~~~~r~~~~~~yk~~R~~~~~~~~~a~r~~~pe~l~~~~~~~~~ 131 (341)
T 3q8k_A 52 LQNEEGETTSHLMGMFYRTIRMMENGIKPVYVFDGKPPQLKSGELAKRSERRAEAEKQLQQAQAAGAEQEVEKFTKRLVK 131 (341)
T ss_dssp CBCTTSCBCHHHHHHHHHHHHHHTTTCEEEEEECCCCCGGGHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHTCC
T ss_pred CCCCCCCCchHHHHHHHHHHHHHHCCCCceEEEeCCCcccchhhhHHHHHHHhHhHHHHHHHHhcCCHHHHHHHHhhccc
Confidence 78999999999999999999999989999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhHHHHHHHHHhcCCCEEeccCcHHHHHHHHHHcCCeEEEecCCCcccccccCeeEEEeecCCCCCCccEEEeHHHH
Q 017910 82 VTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKI 161 (364)
Q Consensus 82 vt~~~~~~ik~lL~~~GIp~i~APgEADaq~A~L~~~g~v~~ViS~DsD~l~fg~~~vi~~l~~~~~~~~~v~~~~~~~v 161 (364)
||++|++.++++|++|||||++||||||||||+|++.|.+++|+|+|+|+|||++++|++++..+..++.++..|+.+.+
T Consensus 132 vt~~q~~~~~~lL~~~gip~i~ap~EADd~ia~La~~g~v~~i~s~D~D~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~v 211 (341)
T 3q8k_A 132 VTKQHNDECKHLLSLMGIPYLDAPSEAEASCAALVKAGKVYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEFHLSRI 211 (341)
T ss_dssp CCHHHHHHHHHHHHHHTCCEEECSSCHHHHHHHHHHTTSSSEEECSCTHHHHTTCSEEEESCCCCSSCCCEEEEEEHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCEEECCccHHHHHHHHHhcCCeEEEEcCCccccccCCcEEEEcccccccCCCceEEEcHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998887544334456789999999
Q ss_pred HHHcCCCHHHHHHHHHHhCCCCCCCCCCccHHHHHHHHHHcCCHHHHHHHHHhccCCCCCCcchHHHHHHhCCCCcCCcc
Q 017910 162 LEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDE 241 (364)
Q Consensus 162 ~e~lgl~~~qfidl~iL~G~Dy~d~IpGIG~ktA~kLik~~gsle~il~~l~~~k~~i~e~~~~~~~~~lf~~p~V~~~~ 241 (364)
++++|++|+||+|+|+|+||||+|||||||||||++||++|||+|+|++++++.+.++|++|++.+++.+|++|.|+++.
T Consensus 212 ~~~~gl~~~q~id~~~L~G~D~~~gipGiG~KtA~kll~~~gsle~i~~~~~~~k~~~~~~~~~~~~r~l~l~~~V~~~~ 291 (341)
T 3q8k_A 212 LQELGLNQEQFVDLCILLGSDYCESIRGIGPKRAVDLIQKHKSIEEIVRRLDPNKYPVPENWLHKEAHQLFLEPEVLDPE 291 (341)
T ss_dssp HHHHTCCHHHHHHHHHHHCCSSSCCCTTCCHHHHHHHHHHHCSHHHHHHHSCTTTSCCCTTCCHHHHHHHHHSCCCCCTT
T ss_pred HHHhCCCHHHHHHHHHhcCCCCCCCCCCccHHHHHHHHHHcCCHHHHHHHHHhcCCCCCcccchHHHHHHhCCCCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998766
Q ss_pred ccccCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHhhhccCCCCCcccccC
Q 017910 242 EQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFK 295 (364)
Q Consensus 242 ~~~~l~~~~pd~e~L~~fl~~e~~f~~~rv~~~l~~l~~~~~~~~Q~rld~ff~ 295 (364)
+ .+|.|.+||.++|++||+++++|+++||+++++||.++.+ |++||+||.
T Consensus 292 ~-~~l~~~~pd~~~l~~fl~~~~~f~~~rv~~~~~~l~~~~~---~~~l~~~~~ 341 (341)
T 3q8k_A 292 S-VELKWSEPNEEELIKFMCGEKQFSEERIRSGVKRLSKSRQ---GSTLEVLFQ 341 (341)
T ss_dssp T-SCCCCCCCCHHHHHHHHTTTTCCCHHHHHHHHHHHHHHHH---HHCCCCCCC
T ss_pred c-cccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhc---cCcHhhhcC
Confidence 6 4899999999999999999999999999999999999875 999999994
No 2
>1ul1_X Flap endonuclease-1; protein complex, DNA-binding protein, flap DNA, flap endonuclease, sliding clamp, DNA clamp; 2.90A {Homo sapiens} SCOP: a.60.7.1 c.120.1.2
Probab=100.00 E-value=1.1e-72 Score=561.97 Aligned_cols=299 Identities=54% Similarity=0.972 Sum_probs=248.8
Q ss_pred CcCCCCCchhHHHHHHHHHHHHHHcCCCcEEEEeCCCCchhhHHHHHHHhhhhhchHHHHHHHHcCCHHHHHHHhccccc
Q 017910 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVK 81 (364)
Q Consensus 2 L~~~~G~~Tsal~G~~~r~~~ll~~gi~Pv~VFDG~~p~~K~~~~~~rk~~R~~~~~~l~~a~~~g~~~~~~k~~~r~~~ 81 (364)
|+|++|++|+|++||++|+++|+++||+|+|||||.+|++|++++++||++|+++++.++.++++|+.+++.+|+++++.
T Consensus 52 l~~~~G~~t~~l~g~~~~~~~ll~~~i~P~~VFDG~~~~~K~~~~~~yk~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 131 (379)
T 1ul1_X 52 LQNEEGETTSHLMGMFYRTIRMMENGIKPVYVFDGKPPQLKSGELAKRSERRAEAEKQLQQAQAAGAEQEVEKFTKRLVK 131 (379)
T ss_dssp -------CCHHHHHHHHHHHHHHHTTCCEEEEECCSCCSCCCCCCCCC-----------------------------CCC
T ss_pred cCcCCCCCchHHHHHHHHHHHHHHCCCCeEEEEeCCCcccccchHHHHHhhhhHHHHHHHHHHHcCCHHHHHHHHhhccC
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhHHHHHHHHHhcCCCEEeccCcHHHHHHHHHHcCCeEEEecCCCcccccccCeeEEEeecCCCCCCccEEEeHHHH
Q 017910 82 VTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKI 161 (364)
Q Consensus 82 vt~~~~~~ik~lL~~~GIp~i~APgEADaq~A~L~~~g~v~~ViS~DsD~l~fg~~~vi~~l~~~~~~~~~v~~~~~~~v 161 (364)
||.+|++.++++|++|||||++||||||||||+|++.|.+++|+|+|+|+|||++++|++++...+.++.++.+|+.+.+
T Consensus 132 vt~~~~~~~~~lL~~~Gi~~i~apgEADd~iA~La~~g~~~~iiS~D~Dll~~g~~~v~~~~~~~~~~k~~~~~~~~~~v 211 (379)
T 1ul1_X 132 VTKQHNDECKHLLSLMGIPYLDAPSEAEASCAALVKAGKVYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEFHLSRI 211 (379)
T ss_dssp CCCSCHHHHHHHHHHHTCCEEECSSCHHHHHHHHHHHTSSSEEECSCTHHHHTTCSEEEECSSCCC-CCCCEEEEEHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCeecCCCcHHHHHHHHHhcCCeEEEEecCcCccccccceEEEEecccccCcCCeEEEeHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998877543333456889999999
Q ss_pred HHHcCCCHHHHHHHHHHhCCCCCCCCCCccHHHHHHHHHHcCCHHHHHHHHHhccCCCCCCcchHHHHHHhCCCCcCCcc
Q 017910 162 LEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDE 241 (364)
Q Consensus 162 ~e~lgl~~~qfidl~iL~G~Dy~d~IpGIG~ktA~kLik~~gsle~il~~l~~~k~~i~e~~~~~~~~~lf~~p~V~~~~ 241 (364)
++.+|++++||+|+|+|+||||+|||||||+|||++||++|||+|+|+++++..+..+|++|++.+++.+|.+|.|+++.
T Consensus 212 ~~~~gl~~~q~id~~~L~G~D~~d~IpGIG~KtA~kLl~~~gsle~i~~~~~~~k~~~~~~~~~~~ar~l~l~~~v~~~~ 291 (379)
T 1ul1_X 212 LQELGLNQEQFVDLCILLGSDYCESIRGIGPKRAVDLIQKHKSIEEIVRRLDPNKYPVPENWLHKEAHQLFLEPEVLDPE 291 (379)
T ss_dssp HHHHTCCHHHHHHHHHHHHCSSSCCCTTCCHHHHHHHHHHSSSHHHHHTTCCCTTSCCCSSCCHHHHHHHHHSCCCCCGG
T ss_pred HHHhCCCHHHHHHHHHHhCCCcCCCCCCcCHHHHHHHHHHcCCHHHHHHHHHhhcccCCCcCCHHHHHHHhcCCeeCCCC
Confidence 99999999999999999999999999999999999999999999999999998888999999999999999999999877
Q ss_pred ccccCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHhhhccCCCCCcccccCcccCCC
Q 017910 242 EQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTS 301 (364)
Q Consensus 242 ~~~~l~~~~pd~e~L~~fl~~e~~f~~~rv~~~l~~l~~~~~~~~Q~rld~ff~~~~~~~ 301 (364)
++ ++.|..||.++|++||+++++|+++||++.+++|.++..+.+|+|||+||+++++..
T Consensus 292 ~~-~l~~~~pd~~~l~~fl~~~~~f~~~rv~~~~~rl~~~~~~~~q~~l~~ff~~~~~~~ 350 (379)
T 1ul1_X 292 SV-ELKWSEPNEEELIKFMCGEKQFSEERIRSGVKRLSKSRQGSTQGRLDDFFKVTGSLS 350 (379)
T ss_dssp GC-CCCCCCCCHHHHHHHTTTTSCCCHHHHHHHHHHHHHHHSCCSBCCHHHHSEEEEEEE
T ss_pred Cc-cCCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCCcHHhhcCCCCCCc
Confidence 77 899999999999998889999999999999999999988889999999999976543
No 3
>3ory_A Flap endonuclease 1; hydrolase; 2.00A {Desulfurococcus amylolyticus}
Probab=100.00 E-value=1.9e-71 Score=549.37 Aligned_cols=289 Identities=38% Similarity=0.669 Sum_probs=257.3
Q ss_pred CCcCCCCCchhHHHHHHHHHHHHHHcCCCcEEEEeCCCCchhhHHHHHHHhhhhhchHHHHHHHHcCCHHHHHHHhcccc
Q 017910 1 MLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTV 80 (364)
Q Consensus 1 ~L~~~~G~~Tsal~G~~~r~~~ll~~gi~Pv~VFDG~~p~~K~~~~~~rk~~R~~~~~~l~~a~~~g~~~~~~k~~~r~~ 80 (364)
+|+|++|++|+|++|||+|+++|+++||+|+|||||.+|++|++++++||++|+++++++..++++|+.+++.+++++++
T Consensus 60 ~l~~~~G~~T~al~gf~~r~~~ll~~~i~Pv~VFDg~~p~~K~~~~~~yK~~R~~~~e~l~~~~~~g~~~~a~~~~~~~~ 139 (363)
T 3ory_A 60 PLMDNNGRITSHLSGLFYRTINIVEAGIKPVYVFDGKPPELKAREIERRKAVKEEAAKKYEEAVQSGDLELARRYAMMSA 139 (363)
T ss_dssp BCBCTTSCBCHHHHHHHHHHHHHHHTTCEEEEEECSSCGGGCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHTCCCC
T ss_pred ccCCCCCCCccHHHHHHHHHHHHHHcCCCcEEEEcCCCccchHHHHHHHHHhhhhchHHHHHHHHcCCHHHHHHHHhccc
Confidence 37899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhHHHHHHHHHhcCCCEEeccCcHHHHHHHHHHcCCeEEEecCCCcccccccCeeEEEeecCCCCCC---------
Q 017910 81 KVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKI--------- 151 (364)
Q Consensus 81 ~vt~~~~~~ik~lL~~~GIp~i~APgEADaq~A~L~~~g~v~~ViS~DsD~l~fg~~~vi~~l~~~~~~~~--------- 151 (364)
.||++|++.++++|++|||||++||||||||||+|++.|.+++|+|+|+|+||||+++|+++++..+.++.
T Consensus 140 ~vt~~~~~~i~~lL~~~GIp~i~apgEADaqiA~La~~g~~~~I~S~D~D~l~fg~~~v~~~l~~~~~~~~p~~~~~v~~ 219 (363)
T 3ory_A 140 KLTEEMVRDAKSLLDAMGIPWVQAPAEGEAQAAYIVKKGDAYASASQDYDSLLFGSPKLVRNLTISGRRKLPRKNEYVEV 219 (363)
T ss_dssp CCCHHHHHHHHHHHHHHTCCEEECSSCHHHHHHHHHHTTSCSEEECSSSHHHHTTCSEEEESTTTCEEEECSSTTCEEEE
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEeCccHHHHHHHHHHCCCeEEEECCCcCccccCCCeEEEEeeccccccCCcccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999988754321100
Q ss_pred ccEEEeHHHHHHHcCCCHHHHHHHHHHhCCCCCC-CCCCccHHHHHHHHHHcCCHHHHHHHHHhccCCCCCCcchHHHHH
Q 017910 152 PVMEFEVAKILEELNLTMDQFIDLCILSGCDYCD-SIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARR 230 (364)
Q Consensus 152 ~v~~~~~~~v~e~lgl~~~qfidl~iL~G~Dy~d-~IpGIG~ktA~kLik~~gsle~il~~l~~~k~~i~e~~~~~~~~~ 230 (364)
..+.|+.+.+++++|++|+||+|+|+|+||||++ ||||||+|||++||++|||+|+|+++++. ..+| |++.++++
T Consensus 220 ~~~~~~~~~v~~~~gl~~~q~id~~~L~GsDy~p~GVpGIG~KtA~kLl~~~gsle~il~~~~~--~~~~--~~~~~~~~ 295 (363)
T 3ory_A 220 KPELIELDKLLVQLGITLENLIDIGILLGTDYNPDGFEGIGPKKALQLVKAYGGIEKIPKPILK--SPIE--VDVIAIKK 295 (363)
T ss_dssp CCEEEEHHHHHHHHTCCHHHHHHHHHHHCBTTBTTCSTTCCHHHHHHHHHHHTSSTTSCGGGCC--CSSC--CCHHHHHH
T ss_pred ceEEEcHHHHHHHhCcCHHHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHHcCCHHHHHHhccc--ccCC--CCHHHHHH
Confidence 2468999999999999999999999999999999 99999999999999999999999999874 2343 67899999
Q ss_pred HhCCCCcCCccccccCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHhhhc---cCCCCCcccccCc
Q 017910 231 LFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKN---KSSQGRLESFFKP 296 (364)
Q Consensus 231 lf~~p~V~~~~~~~~l~~~~pd~e~L~~fl~~e~~f~~~rv~~~l~~l~~~~~---~~~Q~rld~ff~~ 296 (364)
+|++|.|+. +. +|+|+.||.++|++||+++++|+++||++.++||.++.+ +.+|+|||+||+.
T Consensus 296 ~f~~p~v~~--~~-~~~w~~pd~~~l~~fl~~~~~f~~~rv~~~~~~l~~~~~~~~~~~q~~l~~~f~~ 361 (363)
T 3ory_A 296 YFLQPQVTD--NY-RIEWHTPDPDAVKRILVDEHDFSIDRVSTALERYVKAFKENIRGEQKGLSKWFSK 361 (363)
T ss_dssp HHHSCCCCS--CC-CCCCCCCCHHHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHTC------------
T ss_pred HhcCCCCCC--CC-CCCCCCCCHHHHHHHHHhccCCCHHHHHHHHHHHHHHhcccccCcCCCHHHhcCC
Confidence 999999994 45 699999999999999999999999999999999988775 4799999999975
No 4
>2izo_A FEN1, flap structure-specific endonuclease; hydrolase, DNA repair, DNA-binding, endonuclease, metal-BIND excision repair, DNA replication, PCNA; HET: DNA; 2.9A {Sulfolobus solfataricus}
Probab=100.00 E-value=1.4e-67 Score=519.43 Aligned_cols=289 Identities=39% Similarity=0.664 Sum_probs=207.9
Q ss_pred CcCCCCCchhHHHHHHHHHHHHHHcCCCcEEEEeCCCCchhhHHHHHHHhhhhhchHHHHHHHHcCCHHHHHHHhccccc
Q 017910 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVK 81 (364)
Q Consensus 2 L~~~~G~~Tsal~G~~~r~~~ll~~gi~Pv~VFDG~~p~~K~~~~~~rk~~R~~~~~~l~~a~~~g~~~~~~k~~~r~~~ 81 (364)
|+|++|.+|+|++||++++++|+++||+|+|||||.+|++|++++++||++|+++++++..+++.|+.+++.+|+++++.
T Consensus 44 l~~~~G~~t~al~g~~~~~~~ll~~~i~Pv~vFDG~~~~~r~~~~~~yk~~R~~~~~~l~~~~~~g~~~~a~~~~~~~~~ 123 (346)
T 2izo_A 44 LMDSQGRVTSHLSGLFYRTINILEEGVIPIYVFDGKPPEQKSEELERRRKAKEEAERKLERAKSEGKIEELRKYSQAILR 123 (346)
T ss_dssp CBCSSSCBCHHHHHHHHHHHHHHHHTEEEEEEECC---------------------------------------------
T ss_pred ccccCCCccHHHHHHHHHHHHHHHCCCcEEEEECCCCcchhhhHHHHHHHHHHHhHHHHHHHHhcCCHHHHHHHHhhccC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhHHHHHHHHHhcCCCEEeccCcHHHHHHHHHHcCCeEEEecCCCcccccccCeeEEEeecCCCCCC---------c
Q 017910 82 VTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKI---------P 152 (364)
Q Consensus 82 vt~~~~~~ik~lL~~~GIp~i~APgEADaq~A~L~~~g~v~~ViS~DsD~l~fg~~~vi~~l~~~~~~~~---------~ 152 (364)
+|++|++.++++|++|||||++||||||||||+|++.|.+++|+|+|+|++|||+++|++++...+.++. .
T Consensus 124 vt~~~~~~~~~lL~~~gi~~i~ap~EADa~ia~La~~g~~~~I~S~D~D~l~~~~~~v~~~~~~~~~~~~p~~~~~~~~~ 203 (346)
T 2izo_A 124 LSNIMVEESKKLLRAMGIPIVQAPSEGEAEAAYLNKLGLSWAAASQDYDAILFGAKRLVRNLTITGKRKLPNKDVYVEIK 203 (346)
T ss_dssp -CHHHHHHHHHHHHHHTCCEEECSSCHHHHHHHHHHTTSSSEEECSSSHHHHTTCSEEEESSCC-----------CCCCC
T ss_pred CCHHHHHHHHHHHHHCCCCEEEcCCcHHHHHHHHHhCCCeEEEECCCCCcceecCCeEEEEecccccccCcccccccccc
Confidence 9999999999999999999999999999999999999999999999999999999999887754322111 3
Q ss_pred cEEEeHHHHHHHcCCCHHHHHHHHHHhCCCCCC-CCCCccHHHHHHHHHHcCCHHHHHHHHHhccCCCCCCcchHHHHHH
Q 017910 153 VMEFEVAKILEELNLTMDQFIDLCILSGCDYCD-SIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRL 231 (364)
Q Consensus 153 v~~~~~~~v~e~lgl~~~qfidl~iL~G~Dy~d-~IpGIG~ktA~kLik~~gsle~il~~l~~~k~~i~e~~~~~~~~~l 231 (364)
+..|+.+.+++.+|++|+||+|+|+|+||||++ ||||||+|||++||++|||+|+|+++++..+ +|++|++.+++.+
T Consensus 204 ~~~~~~~~v~~~~gl~~~q~id~~~L~G~D~~p~Gv~GIG~KtA~kLi~~~gsle~i~~~~~~~k--~~~~~~~~~l~~i 281 (346)
T 2izo_A 204 PELIETEILLKKLGITREQLIDIGILIGTDYNPDGIRGIGPERALKIIKKYGKIEKAMEYGEISK--KDINFNIDEIRGL 281 (346)
T ss_dssp CEEEEHHHHHHHHTCCHHHHHHHHHHHCCSSSTTCSTTCCHHHHHHHHHHSSCC-------------------CTTHHHH
T ss_pred eEEEEHHHHHHHcCCCHHHHHHHHHHcCCCCCCCCCCCcCHHHHHHHHHHcCCHHHHHHHHHhcc--CCCCccHHHHHHH
Confidence 567999999999999999999999999999999 9999999999999999999999999998774 8999988899999
Q ss_pred hCCCCcCCccccccCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHhhhcc----CCCCCccccc
Q 017910 232 FKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNK----SSQGRLESFF 294 (364)
Q Consensus 232 f~~p~V~~~~~~~~l~~~~pd~e~L~~fl~~e~~f~~~rv~~~l~~l~~~~~~----~~Q~rld~ff 294 (364)
|.++.|... ..++.|.+||.++|++||+++++|+++||++.++||.++.++ .+|+|||+||
T Consensus 282 ~~~~~v~~~--~~~l~~~~~d~~~l~~~~~~~~~f~~~rv~~~~~~l~~~~~~~~~~~~q~~l~~ff 346 (346)
T 2izo_A 282 FLNPQVVKP--EEALDLNEPNGEDIINILVYEHNFSEERVKNGIERLTKAIKEAKGASRQTGLDRWF 346 (346)
T ss_dssp HHSCCCCCC--C-CCCCCCCCHHHHHHHTTTTTCCCHHHHHHHHHHHHHHHHHHHHHHTBCCGGGCC
T ss_pred hhCCCCCCc--cccCccCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcccCCCCCcchhhcC
Confidence 999999854 347999999999999999899999999999999999987664 5899999999
No 5
>1b43_A Protein (FEN-1); nuclease, DNA repair, DNA replication, transferase; 2.00A {Pyrococcus furiosus} SCOP: a.60.7.1 c.120.1.2 PDB: 1mc8_A
Probab=100.00 E-value=2.3e-65 Score=502.47 Aligned_cols=283 Identities=42% Similarity=0.746 Sum_probs=263.1
Q ss_pred CcCCCCCchhHHHHHHHHHHHHHHcCCCcEEEEeCCCCchhhHHHHHHHhhhhhchHHHHHHHHcCCHHHHHHHhccccc
Q 017910 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVK 81 (364)
Q Consensus 2 L~~~~G~~Tsal~G~~~r~~~ll~~gi~Pv~VFDG~~p~~K~~~~~~rk~~R~~~~~~l~~a~~~g~~~~~~k~~~r~~~ 81 (364)
|+|+.|.+|+|++||++++++|++++++|+|||||.+|++|++++++|+.+|+++.+.+.+++..|+.+.+.+++++++.
T Consensus 47 l~~~~G~~t~~l~g~~~~l~~ll~~~i~pv~VFDG~~~~~K~~~~~~R~~~r~~~~~~~~~~yk~g~~~~~~~~~~~~~~ 126 (340)
T 1b43_A 47 LMDSKGRITSHLSGLFYRTINLMEAGIKPVYVFDGEPPEFKKKELEKRREAREEAEEKWREALEKGEIEEARKYAQRATR 126 (340)
T ss_dssp CBCTTSCBCHHHHHHHHHHHHHHHTTCEEEEEECCSCCCCSSCSSTTCCCCTTHHHHHHHHHHHHSCHHHHHHHHHTSGG
T ss_pred cccccCCchHHHHHHHHHHHHHHhCCCEEEEEecCCCchhhhhhHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhcCC
Confidence 78999999999999999999999999999999999999999999999999999999999889999999999999999999
Q ss_pred cchhhHHHHHHHHHhcCCCEEeccCcHHHHHHHHHHcCCeEEEecCCCcccccccCeeEEEeecCCCCCC---------c
Q 017910 82 VTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKI---------P 152 (364)
Q Consensus 82 vt~~~~~~ik~lL~~~GIp~i~APgEADaq~A~L~~~g~v~~ViS~DsD~l~fg~~~vi~~l~~~~~~~~---------~ 152 (364)
+|+.|++.++++|++|||||++||+|||||||+|++.|.+++|+|+|+|+||||+++|++++...+.++. .
T Consensus 127 vt~~~~~~~~~lL~~~gip~i~ap~EADa~iA~La~~g~~~~i~S~D~D~l~~g~~~v~~~~~~~~~~~~p~~~~~v~~~ 206 (340)
T 1b43_A 127 VNEMLIEDAKKLLELMGIPIVQAPSEGEAQAAYMAAKGSVYASASQDYDSLLFGAPRLVRNLTITGKRKLPGKNVYVEIK 206 (340)
T ss_dssp GTHHHHHHHHHHHHHHTCCEEECSSCHHHHHHHHHHHTSSSEEECSSSHHHHTTCSEEEESTTTCEEEECTTSSCEEEEC
T ss_pred CCHHHHHHHHHHHHHcCCcEEEcChhHHHHHHHHHHcCCEEEEEccCCCcceecCcEEEEEeccCCCccCcccccccccc
Confidence 9999999999999999999999999999999999999999999999999999999999887654321111 3
Q ss_pred cEEEeHHHHHHHcCCCHHHHHHHHHHhCCCCCC-CCCCccHHHHHHHHHHcCCHHHHHHHHHhccCCCCCCcchHHHHHH
Q 017910 153 VMEFEVAKILEELNLTMDQFIDLCILSGCDYCD-SIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRL 231 (364)
Q Consensus 153 v~~~~~~~v~e~lgl~~~qfidl~iL~G~Dy~d-~IpGIG~ktA~kLik~~gsle~il~~l~~~k~~i~e~~~~~~~~~l 231 (364)
+..|+.+.+++.+|++|+||+|+|+|+||||++ ||||||+|||++||++|||+|+|+++ |++|++.+++.+
T Consensus 207 ~~~~~~~~v~~~~gl~~~q~id~~~L~G~Dy~p~gv~GiG~ktA~kli~~~gsle~il~~--------~~~~~~~~~~~~ 278 (340)
T 1b43_A 207 PELIILEEVLKELKLTREKLIELAILVGTDYNPGGIKGIGLKKALEIVRHSKDPLAKFQK--------QSDVDLYAIKEF 278 (340)
T ss_dssp CEEEEHHHHHHHHTCCHHHHHHHHHHHCCTTSTTCSTTCCHHHHHHHHHTCSSGGGGTGG--------GCSSCHHHHHHH
T ss_pred eeEEEHHHHHHHhCCCHHHHHHHHHhcCCCCCCCCCCCccHHHHHHHHHHcCCHHHHHcC--------CCCccHHHHHHH
Confidence 467999999999999999999999999999999 99999999999999999999999988 456677789999
Q ss_pred hCCCCcCCccccccCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHhhhccCCCCCcccccC
Q 017910 232 FKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFK 295 (364)
Q Consensus 232 f~~p~V~~~~~~~~l~~~~pd~e~L~~fl~~e~~f~~~rv~~~l~~l~~~~~~~~Q~rld~ff~ 295 (364)
|++|.|+. ..++.|.+||.++|++||+++++|+++||++.++||.++.++.+|+|||+||+
T Consensus 279 ~~~~~v~d---~~~~~~~~pd~~~l~~~~~~~~~f~~~rv~~~~~~~~~~~~~~~q~~l~~~f~ 339 (340)
T 1b43_A 279 FLNPPVTD---NYNLVWRDPDEEGILKFLCDEHDFSEERVKNGLERLKKAIKSGKQSTLESWFK 339 (340)
T ss_dssp HHSCCCCC---CCCCCCCCCCHHHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHTTGGGCCSSCC
T ss_pred HhCCCCCC---cccCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhcCCCCCCHHHhhC
Confidence 99998874 34799999999999999989999999999999999999888889999999996
No 6
>1rxw_A Flap structure-specific endonuclease; helical clamp, helix-3 turn-helix, hydrophobic wedge, 3' FLA site, hydrolase-DNA complex; 2.00A {Archaeoglobus fulgidus} SCOP: a.60.7.1 c.120.1.2 PDB: 1rxv_A
Probab=100.00 E-value=2.5e-64 Score=494.30 Aligned_cols=280 Identities=39% Similarity=0.671 Sum_probs=245.8
Q ss_pred CcCCCCCchhHHHHHHHHHHHHHHcCCCcEEEEeCCCCchhhHHHHHHHhhhhhchHHHHHHHHcCCHHHHHHHhccccc
Q 017910 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVK 81 (364)
Q Consensus 2 L~~~~G~~Tsal~G~~~r~~~ll~~gi~Pv~VFDG~~p~~K~~~~~~rk~~R~~~~~~l~~a~~~g~~~~~~k~~~r~~~ 81 (364)
|+|++|.+|+|++||++++++|++++|+|+|||||.+|++|++++++||++|.++++.+..+++.|+ +++.+|+++++.
T Consensus 47 l~~~~G~~t~a~~g~~~~l~~ll~~~i~Pv~vFDg~~~~~R~~~~~~yk~~R~~~~~~~~~~~~~g~-~~l~~~~~~~~~ 125 (336)
T 1rxw_A 47 LKDSQGRITSHLSGILYRVSNMVEVGIRPVFVFDGEPPEFKKAEIEERKKRRAEAEEMWIAALQAGD-KDAKKYAQAAGR 125 (336)
T ss_dssp CBCTTSCBCHHHHHHHHHHHHHHHHTCEEEEEECCSCCGGGHHHHHHHHHHHHHHHHHHHHHHHHTC-TTHHHHHHHHCC
T ss_pred ccccCCCccHHHHHHHHHHHHHHHCCCEEEEEEcCCCCcccccchHHHHHHHHHHHHHHHHHHHhch-HHHHHHHHhhcc
Confidence 6789999999999999999999999999999999999999999999999999999999999999999 888999999999
Q ss_pred cchhhHHHHHHHHHhcCCCEEeccCcHHHHHHHHHHcCCeEEEecCCCcccccccCeeEEEeecCCCCC---------Cc
Q 017910 82 VTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRK---------IP 152 (364)
Q Consensus 82 vt~~~~~~ik~lL~~~GIp~i~APgEADaq~A~L~~~g~v~~ViS~DsD~l~fg~~~vi~~l~~~~~~~---------~~ 152 (364)
||++|++.++++|++|||||++||||||||||+|++.|.+++|+|+|+|++||++++|++++...+.++ ..
T Consensus 126 vt~~~~~~~~~lL~~~gi~~i~apgeAEA~lA~la~~g~~~~I~S~D~Dllql~~~~v~~~l~~~~~~~~~~~~~~~~~~ 205 (336)
T 1rxw_A 126 VDEYIVDSAKTLLSYMGIPFVDAPSEGEAQAAYMAAKGDVEYTGSQDYDSLLFGSPRLARNLAITGKRKLPGKNVYVDVK 205 (336)
T ss_dssp CCHHHHHHHHHHHHHTTCCEEECSSCHHHHHHHHHHTTSSSEEECSSSHHHHTTCSEEEESCCC-------------CCC
T ss_pred CCHHHHHHHHHHHHhCCCCEEEcCchHHHHHHHHHHcCCeeEEEcCCCCcceecCCeEEEeccccccccCCccccccccc
Confidence 999999999999999999999999999999999999999999999999999999999998876542210 14
Q ss_pred cEEEeHHHHHHHcCCCHHHHHHHHHHhCCCCCCCCCCccHHHHHHHHHHcCCHHHHHHHHHhccCCCCCCcc-hHHHHHH
Q 017910 153 VMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWP-YQEARRL 231 (364)
Q Consensus 153 v~~~~~~~v~e~lgl~~~qfidl~iL~G~Dy~d~IpGIG~ktA~kLik~~gsle~il~~l~~~k~~i~e~~~-~~~~~~l 231 (364)
++.|+.+.+++++|++|+||+|+|+|+||||++||||||+|||++||++|||+|+|+++++ ++|+ ..+.+.+
T Consensus 206 ~~~~~~~~v~~~~gl~~~q~id~~~L~GsD~ipGv~GiG~KtA~kLl~~~gsle~i~~~~~-------~~l~~~~~l~~i 278 (336)
T 1rxw_A 206 PEIIILESNLKRLGLTREQLIDIAILVGTDYNEGVKGVGVKKALNYIKTYGDIFRALKALK-------VNIDHVEEIRNF 278 (336)
T ss_dssp CEEEEHHHHHHHHTCCHHHHHHHHHHHCBTTBCCCTTCCHHHHHHHHHHHSSHHHHHHHHT-------C----CHHHHHH
T ss_pred eEEeEHHHHHHHcCCCHHHHHHHHhhcCCCCCCCCCCcCHHHHHHHHHHcCCHHHHHHhCC-------CCCccHHHHHHH
Confidence 5689999999999999999999999999999999999999999999999999999999986 2333 4588899
Q ss_pred hCCCCcCCccccccCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHhhhccCCCCCccccc
Q 017910 232 FKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFF 294 (364)
Q Consensus 232 f~~p~V~~~~~~~~l~~~~pd~e~L~~fl~~e~~f~~~rv~~~l~~l~~~~~~~~Q~rld~ff 294 (364)
|.++.|. . ..++.|.+||.++|++||+++++|+++||++.++||.++.. +|+|||+||
T Consensus 279 ~~~~~v~-~--~~~~~~~~~d~~~l~~~~~~~~~f~~~rv~~~~~~l~~~~~--~q~~l~~~f 336 (336)
T 1rxw_A 279 FLNPPVT-D--DYRIEFREPDFEKAIEFLCEEHDFSRERVEKALEKLKALKS--TQATLERWF 336 (336)
T ss_dssp HHSCCCC-C--CCCCCCCCCCHHHHHHHHTTTTCCCHHHHHHHHGGGCC--------------
T ss_pred HhCCCCC-C--cccccCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHhhhc--cCcchhhcC
Confidence 9999987 2 34799999999999999989999999999999999997754 799999998
No 7
>1a76_A Flap endonuclease-1 protein; 5'-3' EXO/endo nuclease, DNA replication, RTH, RAD27, DNA repair; 2.00A {Methanocaldococcus jannaschii} SCOP: a.60.7.1 c.120.1.2 PDB: 1a77_A
Probab=100.00 E-value=2.8e-65 Score=499.18 Aligned_cols=277 Identities=40% Similarity=0.714 Sum_probs=249.4
Q ss_pred CcCCCCCchhHHHHHHHHHHHHHHcCCCcEEEEeCCCCchhhHHHHHHHhhhhhchHHHHHHHHcCCHHHHHHHhccccc
Q 017910 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVK 81 (364)
Q Consensus 2 L~~~~G~~Tsal~G~~~r~~~ll~~gi~Pv~VFDG~~p~~K~~~~~~rk~~R~~~~~~l~~a~~~g~~~~~~k~~~r~~~ 81 (364)
|+|++|.+|+|++||++++++|+.++++|+|||||.+|++|++++++||++|+++++++..+++.|+.+++.+|+++++.
T Consensus 47 l~~~~G~~t~~l~g~~~~l~~ll~~~i~Pv~vFDG~~~~~k~~~~~~yk~~R~~~~~~l~~~~~~g~~~~a~~~~~~~~~ 126 (326)
T 1a76_A 47 LRNRKGEITSAYNGVFYKTIHLLENDITPIWVFDGEPPKLKEKTRKVRREMKEKAELKMKEAIKKEDFEEAAKYAKRVSY 126 (326)
T ss_dssp CBCTTSCBCHHHHHHHHHHHHHHHTTCEEEEEECCCSSCCCCSSCCSSCSSSCSSCSCCCCCCSHHHHHTTSTTGGGGCS
T ss_pred cccccCCccHHHHHHHHHHHHHHHCCCeEEEEEeCcCcccchhhHHHHHHHHHhhHHHHHHHHHcCCHHHHHHHHHhcCC
Confidence 78899999999999999999998889999999999999999999999999999999999888888988999999999999
Q ss_pred cchhhHHHHHHHHHhcCCCEEeccCcHHHHHHHHHHcCCeEEEecCCCcccccccCeeEEEeecCCCCCCccEEEeHHHH
Q 017910 82 VTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKI 161 (364)
Q Consensus 82 vt~~~~~~ik~lL~~~GIp~i~APgEADaq~A~L~~~g~v~~ViS~DsD~l~fg~~~vi~~l~~~~~~~~~v~~~~~~~v 161 (364)
+|+.|++.++++|++|||||++||||||||||+|++.|.+++|+|+|+|++|||+++|++++...+ ..++.|+.+.+
T Consensus 127 vt~~~~~~~~~lL~~~gi~~i~apgEAD~~ia~La~~g~~~~I~S~D~Dll~~~~~~v~~~~~~~~---~~~~~~~~~~v 203 (326)
T 1a76_A 127 LTPKMVENCKYLLSLMGIPYVEAPSEGEAQASYMAKKGDVWAVVSQDYDALLYGAPRVVRNLTTTK---EMPELIELNEV 203 (326)
T ss_dssp SCHHHHHHHHHHHHHHTCCEEECSSCHHHHHHHHHHTTSSSEEECSSSGGGGGTCSEEEESSSSCS---SCCEEEEHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCeEECCccHHHHHHHHHHCCCEEEEecCCcccceecCCEEEEeecCCC---CceEEEEHHHH
Confidence 999999999999999999999999999999999999999999999999999999999988765432 35789999999
Q ss_pred HHHcCCCHHHHHHHHHHhCCCCCC-CCCCccHHHHHHHHHHcCCHHHHH-HHHHhccCCCCCCcchHHHHHHhCCCCcCC
Q 017910 162 LEELNLTMDQFIDLCILSGCDYCD-SIRGIGGQTALKLIRQHGSIETIL-ENINRERYQIPEDWPYQEARRLFKEPEVVT 239 (364)
Q Consensus 162 ~e~lgl~~~qfidl~iL~G~Dy~d-~IpGIG~ktA~kLik~~gsle~il-~~l~~~k~~i~e~~~~~~~~~lf~~p~V~~ 239 (364)
++++|++|+||+|+|+|+||||++ ||||||+|||++||++ ||+|+|+ ++++. +.+++.+|++|.|..
T Consensus 204 ~~~~gl~~~q~id~~~L~GsD~~p~GvpGiG~ktA~kli~~-gsle~i~~~~~~~----------~~~~~~~~l~~~l~~ 272 (326)
T 1a76_A 204 LEDLRISLDDLIDIAIFMGTDYNPGGVKGIGFKRAYELVRS-GVAKDVLKKEVEY----------YDEIKRIFKEPKVTD 272 (326)
T ss_dssp HHHHTCCHHHHHHHHHHHCCTTSTTTTTTCCHHHHHHHHHH-TCHHHHHHHHSTT----------HHHHHHHHHSCCCCC
T ss_pred HHHcCCCHHHHHHHHHHcCCCCCCCCCCCcCHHHHHHHHHc-CCHHHHHHHHHhH----------HHHHHHHHhCCCCCC
Confidence 999999999999999999999999 9999999999999999 9999999 99762 357889999998885
Q ss_pred ccccccCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHhhhcc-CCCCCcccccC
Q 017910 240 DEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNK-SSQGRLESFFK 295 (364)
Q Consensus 240 ~~~~~~l~~~~pd~e~L~~fl~~e~~f~~~rv~~~l~~l~~~~~~-~~Q~rld~ff~ 295 (364)
++ ++.|.+||.++|++||+++++|+++||++.++||.++.++ .+|+|||+||+
T Consensus 273 --~~-~~~~~~~d~~~l~~~~~~~~~f~~~rv~~~~~~~~~~~~~~~~q~~l~~~f~ 326 (326)
T 1a76_A 273 --NY-SLSLKLPDKEGIIKFLVDENDFNYDRVKKHVDKLYNLIANKTKQKTLDAWFK 326 (326)
T ss_dssp --CC-CCCCCCCCHHHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHC----------
T ss_pred --Cc-cCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCCcCchhhhcC
Confidence 55 8999999999999997799999999999999999988765 78999999995
No 8
>3qe9_Y Exonuclease 1; exonuclease, hydrolase-DNA complex; HET: DNA; 2.51A {Homo sapiens} PDB: 3qeb_Z* 3qea_Z*
Probab=100.00 E-value=1e-51 Score=406.93 Aligned_cols=285 Identities=27% Similarity=0.415 Sum_probs=232.3
Q ss_pred CCCCchhHHHHHHHHHHHHH-HcCCCcEEEEeCCCCchhhHHHHHHHhhhhhchHHHHHHHHcCCHHHHHHHhccccccc
Q 017910 5 EAGEVTSHLQGMFTRTIRLL-EAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVT 83 (364)
Q Consensus 5 ~~G~~Tsal~G~~~r~~~ll-~~gi~Pv~VFDG~~p~~K~~~~~~rk~~R~~~~~~l~~a~~~g~~~~~~k~~~r~~~vt 83 (364)
+.|++|+|+.|+|+|+++++ ++||+|+|||||.+++.|.++..+|+.+|+++.+..++++++|+.+++.+++++++.||
T Consensus 47 ~~G~~t~~l~~~~~r~l~~L~~~gI~PvfVFDG~~~p~Kk~~~~~Rr~~r~~~~~~~~~~~~~g~~~~a~~~f~~~~~vt 126 (352)
T 3qe9_Y 47 AKGEPTDRYVGFCMKFVNMLLSHGIKPILVFDGCTLPSKKEVERSRRERRQANLLKGKQLLREGKVSEARECFTRSINIT 126 (352)
T ss_dssp HTTCCCCHHHHHHHHHHHHHHHTTCEEEEEECCSCCTTTHHHHHHHHHHHHHHHHHHHHHTTSSCCHHHHHHHGGGCCCC
T ss_pred cCCCCcHHHHHHHHHHHHHHHHcCCEEEEEECCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhcCCCC
Confidence 58999999999999999974 89999999999999889999888999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHhcCCCEEeccCcHHHHHHHHHHcCCeEEEecCCCcccccccCeeEEEeecCCCCCCccEEEeHHHH--
Q 017910 84 KQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKI-- 161 (364)
Q Consensus 84 ~~~~~~ik~lL~~~GIp~i~APgEADaq~A~L~~~g~v~~ViS~DsD~l~fg~~~vi~~l~~~~~~~~~v~~~~~~~v-- 161 (364)
++|++.++++|++|||||++||+|||||||+|+++|.+++|+|+|+|+|||++++|++++...+ ....|+.+.+
T Consensus 127 ~~~~~~i~~~L~~~gIp~i~ap~EADaqiA~La~~g~~~~I~S~D~Dll~~~~~~v~~~~~~~~----~~~~~~~~~~~~ 202 (352)
T 3qe9_Y 127 HAMAHKVIKAARSQGVDCLVAPYEADAQLAYLNKAGIVQAIITEDSALLAFGCKKVILKMDQFG----NGLEIDQARLGM 202 (352)
T ss_dssp HHHHHHHHHHHHHTTCEEEECSSCHHHHHHHHHHTTSCSEEECSCGGGGGGTCSEEEESCCTTS----EEEEEEGGGGTT
T ss_pred HHHHHHHHHHHHHcCCcEEECCcchHHHHHHHHHCCCeEEEEeCCcCcccccCCeEEEeccCCC----CcEEEeHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999987665322 1245777775
Q ss_pred HHHcC--CCHHHHHHHHHHhCCCCCCCCCCccHHHHHHHHHHc--CCHHHHHHHHHhc---cCCCCCCcc--hHHHHHHh
Q 017910 162 LEELN--LTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQH--GSIETILENINRE---RYQIPEDWP--YQEARRLF 232 (364)
Q Consensus 162 ~e~lg--l~~~qfidl~iL~G~Dy~d~IpGIG~ktA~kLik~~--gsle~il~~l~~~---k~~i~e~~~--~~~~~~lf 232 (364)
++++| ++|+||+|+|+|+||||++||||||+|||++||++| +|+|++++++++. +..+|++|. +.+|+.+|
T Consensus 203 ~~~~g~~l~~~q~id~~~L~G~D~~pgv~GiG~ktA~kli~~~~~~~l~~il~~~~~~l~~~~~vp~~~~~~~~~A~~~F 282 (352)
T 3qe9_Y 203 CRQLGDVFTEEKFRYMCILSGCDYLSSLRGIGLAKACKVLRLANNPDIVKVIKKIGHYLKMNITVPEDYINGFIRANNTF 282 (352)
T ss_dssp CCTTCSSCCHHHHHHHHHHHCCSSSCCCTTCCHHHHHHHHHHCCCSCHHHHHTTHHHHHTCCCCCCHHHHHHHHHHHHHH
T ss_pred HHHhCCCCCHHHHHHHHHhcCCCCCCCCCCeeHHHHHHHHHHhCCCCHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHh
Confidence 68899 999999999999999999999999999999999999 7999999998853 468999998 67899999
Q ss_pred CCCCcCCccccccCCCCCC----CHHHHHHHHHHhcCCChHHHHHHHH-HH-HhhhccCCCCCcccccCcccCCC
Q 017910 233 KEPEVVTDEEQLQIKWSAP----DEEGLINFLVSENGFNSDRVTKAIE-KI-KAAKNKSSQGRLESFFKPVANTS 301 (364)
Q Consensus 233 ~~p~V~~~~~~~~l~~~~p----d~e~L~~fl~~e~~f~~~rv~~~l~-~l-~~~~~~~~Q~rld~ff~~~~~~~ 301 (364)
.|+.|..+..-.-..++++ +.+.+ .|+ ..++...+. .+ .......|-..+++|-+.+..|+
T Consensus 283 ~~q~V~dp~~~~~~~l~~~~~~~~~~~~-~~~-------G~~~~~~~~~~ia~G~~~p~t~~~~~~~~~~~~~~~ 349 (352)
T 3qe9_Y 283 LYQLVFDPIKRKLIPLNAYEDDVDPETL-SYA-------GQYVDDSIALQIALGNKDINTFEQIDDYNPDTAMPA 349 (352)
T ss_dssp HHCEEEETTTTEEEESSCCCSSCCGGGC-CTT-------CCCCCHHHHHHHHHTCBCTTTCCBCCCCCTTCC---
T ss_pred CCCEEECCCCCeEeeCCCCCCCCChhhh-hhc-------CCCCCHHHHHHHhCCCCCcccccccccCCCCCCCCC
Confidence 9999876542111122221 11111 232 122222221 12 23345677888888877766554
No 9
>1exn_A 5'-exonuclease, 5'-nuclease; hydrolase; 2.50A {Enterobacteria phage T5} SCOP: a.60.7.1 c.120.1.2 PDB: 1ut5_A 1ut8_A 1xo1_A
Probab=100.00 E-value=3.2e-45 Score=351.10 Aligned_cols=208 Identities=18% Similarity=0.197 Sum_probs=181.9
Q ss_pred CCCCCchhHHHHHHHHHHHHHHcCCCc---EEEEeCCCCchhhHHHHHHHhhhhhch-------HHHHHHHHcCCHHHHH
Q 017910 4 NEAGEVTSHLQGMFTRTIRLLEAGMKP---IYVFDGQPPDLKKQELAKRYSKRADAT-------DDLAEAVEAGNKEDIE 73 (364)
Q Consensus 4 ~~~G~~Tsal~G~~~r~~~ll~~gi~P---v~VFDG~~p~~K~~~~~~rk~~R~~~~-------~~l~~a~~~g~~~~~~ 73 (364)
|++|+| |++||++++.++++. ++| ++||||.+++||++++++||++|+++| +++
T Consensus 36 ~~~G~p--av~Gf~~~l~~ll~~-~~p~~~vvvFD~~~~tfR~~~~~~YKa~R~~~p~~~~~~~e~L------------- 99 (290)
T 1exn_A 36 NNSKKP--FASSYVSTIQSLAKS-YSARTTIVLGDKGKSVFRLEHLPEYKGNRDEKYAQRTEEEKAL------------- 99 (290)
T ss_dssp HCSSSC--CHHHHHHHHHHHHHH-TTEEEEEEECCBSCCHHHHHHCTTTTHHHHHHHHTSCHHHHHH-------------
T ss_pred CCCCch--HHHHHHHHHHHHHHH-cCCCeEEEEEcCCCchhhhhCcHHHHcCCCCCCccccccchhH-------------
Confidence 678999 999999999999986 788 779999999999999999999999999 555
Q ss_pred HHhccccccchhh-HHHHHHHHHh--cCCCEEeccC-cHHHHHHHHHHc----CCeEEEecCCCcccccccCeeEEEeec
Q 017910 74 KFSKRTVKVTKQH-NDDCKRLLKL--MGVPVVEAPS-EAEAQCAALCKS----GQVYAVASEDMDSLTFGAPRFLRHLMD 145 (364)
Q Consensus 74 k~~~r~~~vt~~~-~~~ik~lL~~--~GIp~i~APg-EADaq~A~L~~~----g~v~~ViS~DsD~l~fg~~~vi~~l~~ 145 (364)
.+| ++.++++|++ ||||++.+|| ||||+||+|++. |..++|+|+|+|++||++++|.. +.
T Consensus 100 ----------~~q~~~~ikell~~~~~gip~i~~~g~EADDviatLa~~~~~~G~~v~IvS~DkDl~Qlv~~~v~v--~~ 167 (290)
T 1exn_A 100 ----------DEQFFEYLKDAFELCKTTFPTFTIRGVEADDMAAYIVKLIGHLYDHVWLISTDGDWDTLLTDKVSR--FS 167 (290)
T ss_dssp ----------HHHHHHHHHHHHHHHTTTSCEECCTTBCHHHHHHHHHHHHGGGSSCEEEECSCGGGGGGCCSSEEE--EE
T ss_pred ----------HHhhHHHHHHHHHhhCCCCcEEEECCcCHHHHHHHHHHHHHHCCCcEEEEeCCCChhhcCCCCEEE--EE
Confidence 667 9999999999 9999999998 999999999985 76777999999999999998732 22
Q ss_pred CCCCCCccEEEeHHHHHHHcCCCH-HHHHHHHHHhC--CCCCCCCCCccHHHHHHHHHHcCCHHHHHHHHHhc-cCCCCC
Q 017910 146 PSSRKIPVMEFEVAKILEELNLTM-DQFIDLCILSG--CDYCDSIRGIGGQTALKLIRQHGSIETILENINRE-RYQIPE 221 (364)
Q Consensus 146 ~~~~~~~v~~~~~~~v~e~lgl~~-~qfidl~iL~G--~Dy~d~IpGIG~ktA~kLik~~gsle~il~~l~~~-k~~i~e 221 (364)
+. ..+.++.+.|.++||++| +||+|+++|+| ||+.+||||||||||++||++|||+|+|+++++++ +.++.+
T Consensus 168 ~~----~~~~~~~~~v~ek~Gv~p~~q~iD~~~L~GD~sDniPGVpGIG~KTA~kLL~~~gsle~i~~~~~~~~~~~~~~ 243 (290)
T 1exn_A 168 FT----TRREYHLRDMYEHHNVDDVEQFISLKAIMGDLGDNIRGVEGIGAKRGYNIIREFGNVLDIIDQLPLPGKQKYIQ 243 (290)
T ss_dssp TT----TTEEECGGGHHHHHSSSSHHHHHHHHHHHCBGGGTBCCCTTCCHHHHHHHHHHHCSHHHHHHHCSCSCCCHHHH
T ss_pred CC----CCEEEcHHHHHHHcCCCHHHHHHHHHHhcCCCcCCCCCCCcCCHhHHHHHHHHcCCHHHHHHHHHHhccHHHHH
Confidence 32 467899999999999999 99999999999 88888889999999999999999999999999987 555555
Q ss_pred CcchHHHHHHhCCCCcCCcccc
Q 017910 222 DWPYQEARRLFKEPEVVTDEEQ 243 (364)
Q Consensus 222 ~~~~~~~~~lf~~p~V~~~~~~ 243 (364)
++........+++.++++.+++
T Consensus 244 ~L~~~~~~~~ls~~L~~i~~d~ 265 (290)
T 1exn_A 244 NLNASEELLFRNLILVDLPTYC 265 (290)
T ss_dssp HHHTCHHHHHHHHHHHCHHHHH
T ss_pred HHHHhHHHHHHHHHhceeeeCC
Confidence 5555556667777788776655
No 10
>1bgx_T TAQ DNA polymerase; DNA polymerase, FAB, PCR, inhibition, helix-coil dynamics, inhibitor design, complex (polymerase/inhibitor); 2.30A {Thermus aquaticus} SCOP: a.60.7.1 c.120.1.2 c.55.3.5 e.8.1.1 PDB: 1cmw_A 1tau_A* 1taq_A*
Probab=100.00 E-value=9.2e-47 Score=406.60 Aligned_cols=233 Identities=27% Similarity=0.361 Sum_probs=202.9
Q ss_pred CcCCCCCchhHHHHHHHHHHHHHHc-CCCcEEEEeCCCCchhhHHHHHHHhhhhhchHHHHHHHHcCCHHHHHHHhcccc
Q 017910 2 LTNEAGEVTSHLQGMFTRTIRLLEA-GMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTV 80 (364)
Q Consensus 2 L~~~~G~~Tsal~G~~~r~~~ll~~-gi~Pv~VFDG~~p~~K~~~~~~rk~~R~~~~~~l~~a~~~g~~~~~~k~~~r~~ 80 (364)
|+|++|+||+|++||++++.++++. ++.|+|||||.+++||++++++||++|+++|+++
T Consensus 33 l~~~~G~~t~av~gf~~~l~~ll~~~~~~~v~vFDg~~~tfR~~~~~~YKa~R~~~pe~l-------------------- 92 (832)
T 1bgx_T 33 LTTSRGEPVQAVYGFAKSLLKALKEDGDAVIVVFDAKAPSFRHEAYGGYKAGRAPTPEDF-------------------- 92 (832)
T ss_dssp CBCSSSCBCSSSTTHHHHHHHGGGTCCSCCCCCCCCSSSCSSSGGGGTTTSCCCCCCTTS--------------------
T ss_pred cccCCCcEehHHHHHHHHHHHHHHHcCCeEEEEEcCCCccccccchHHHHhccccChHHH--------------------
Confidence 7899999999999999999999975 5899999999999999999999999999999888
Q ss_pred ccchhhHHHHHHHHHhcCCCEEeccC-cHHHHHHHHHH----cCCeEEEecCCCcccccccCeeEEEeecCCCCCCccEE
Q 017910 81 KVTKQHNDDCKRLLKLMGVPVVEAPS-EAEAQCAALCK----SGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVME 155 (364)
Q Consensus 81 ~vt~~~~~~ik~lL~~~GIp~i~APg-EADaq~A~L~~----~g~v~~ViS~DsD~l~fg~~~vi~~l~~~~~~~~~v~~ 155 (364)
.+|++.++++|++||||++++|| ||||+||+|++ .|..++|+|+|+|++||++++|.++.. ++ ..
T Consensus 93 ---~~q~~~i~~~l~~~gi~~i~~pg~EADD~iatLa~~~~~~G~~v~IvS~DkDllql~~~~v~~~~~---~g----~~ 162 (832)
T 1bgx_T 93 ---PRQLALIKELVDLLGLARLEVPGYEADDVLASLAKKAEKEGYEVRILTADKDLYQLLSDRIHVLHP---EG----YL 162 (832)
T ss_dssp ---TTGGGTHHHHHHHTTCCCCCCSSSCHHHHHHHHHHHHHHHTCCBCCCCSSTTCCTTCCTTBCBCCS---SS----CC
T ss_pred ---HHHHHHHHHHHHHCCCCEEEeCCccHHHHHHHHHHHHHHcCCeEEEEeCCCChhhcCcCCEEEEeC---CC----cE
Confidence 67899999999999999999998 99999999998 688888999999999999999865432 21 56
Q ss_pred EeHHHHHHHcCCCHHHHHHHHHHhC--CCCCCCCCCccHHHHHHHHHHcCCHHHHHHHHHhccCCCCCCcchHHHHHHhC
Q 017910 156 FEVAKILEELNLTMDQFIDLCILSG--CDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFK 233 (364)
Q Consensus 156 ~~~~~v~e~lgl~~~qfidl~iL~G--~Dy~d~IpGIG~ktA~kLik~~gsle~il~~l~~~k~~i~e~~~~~~~~~lf~ 233 (364)
|+.+.|.++||++|+||+|+|+|+| |||.+||||||+|||++||++|||+|+|++++++++.++++++........++
T Consensus 163 ~~~~~v~~~~gv~p~q~id~~~L~GD~sDnipGVpGIG~KtA~kLl~~~gsle~i~~~~~~~~~~~~~~l~~~~~~a~ls 242 (832)
T 1bgx_T 163 ITPAWLWEKYGLRPDQWADYRALTGDESDNLPGVKGIGEKTARKLLEEWGSLEALLKNLDRLKPAIREKILAHMDDLKLS 242 (832)
T ss_dssp BCSTTHHHHTCCCGGGTTTTTTSSCCSSSCCCCCCCSSSCTTTTTGGGTTSSCSSSSSCCCCCTTTSHHHHSSCSSTTSG
T ss_pred EcHHHHHHHHCcCHHHHHHHHHhcCCccccCCCCCCcCchHHHHHHHHCCCHHHHHHHHHHhChHHHHHHHHhHHHHHHH
Confidence 8999999999999999999999999 88889999999999999999999999999999988777777665333222333
Q ss_pred CCC------cCCccccccCCCCCCCHHHHHHHHHHhcCCC
Q 017910 234 EPE------VVTDEEQLQIKWSAPDEEGLINFLVSENGFN 267 (364)
Q Consensus 234 ~p~------V~~~~~~~~l~~~~pd~e~L~~fl~~e~~f~ 267 (364)
+.+ +++..++ + .|.+||.++|.+|| ++++|+
T Consensus 243 ~~L~~i~~d~~~~~~~-~-~~~~~d~~~l~~~~-~~~~f~ 279 (832)
T 1bgx_T 243 WDLAKVRTDLPLEVDF-A-KRREPDRERLRAFL-ERLEFG 279 (832)
T ss_dssp GGSSCCCSCCCCCCCC-C-CCCCCCHHHHHHHH-TTTTCC
T ss_pred HHHHhhccCCCCCCCh-h-HcCCccHHHHHHHH-HHcCCH
Confidence 333 3333344 4 89999999999999 799996
No 11
>3h7i_A Ribonuclease H, RNAse H; BPT4 RNAse H, 5'-3' exonuclease, hydrolase, endonuclease; 1.50A {Enterobacteria phage T4} PDB: 2ihn_A 3h8w_A 3h8j_A 1tfr_A 3h8s_A
Probab=99.96 E-value=2.3e-30 Score=247.39 Aligned_cols=163 Identities=15% Similarity=0.086 Sum_probs=131.2
Q ss_pred CcCCCCCchhHHHH-HHHHHHHHHHc--CCCc---EEEEeCC-CCchhhHHHHHHHhhhhhchHHHHHHHHcCCHHHHHH
Q 017910 2 LTNEAGEVTSHLQG-MFTRTIRLLEA--GMKP---IYVFDGQ-PPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEK 74 (364)
Q Consensus 2 L~~~~G~~Tsal~G-~~~r~~~ll~~--gi~P---v~VFDG~-~p~~K~~~~~~rk~~R~~~~~~l~~a~~~g~~~~~~k 74 (364)
+++++|.+|++++| |++++.++++. +.+| +++||+. .++||++.|+.||++|.++|+++. .+.+.+
T Consensus 32 f~~~~g~~tnav~ggf~~~L~~ll~~~k~~~P~~iavaFD~~~~~tfR~elyp~YKanR~~~PeeL~-----~Q~~~l-- 104 (305)
T 3h7i_A 32 FPDKEKINLSMVRHLILNSIKFNVKKAKTLGYTKIVLCIDNAKSGYWRRDFAYYYKKNRGKAREEST-----WDWEGY-- 104 (305)
T ss_dssp SCSSSCCCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECCCCTTCCHHHHHSTTTTHHHHHHHHHCS-----SCHHHH--
T ss_pred cCCCCCcchHHHHHHHHHHHHHHHHhhhccCCCEEEEEecCCCCcchHhhhCHHhccCCCCCCHHHH-----HHHHHh--
Confidence 67899999999988 99988888863 2566 4479987 689999999999999999999981 000000
Q ss_pred HhccccccchhhH-HHHHHHHHhcCCCEEeccC-cHHHHHHHHHH----cCCeEEEecCCCccccccc-CeeEEEeecCC
Q 017910 75 FSKRTVKVTKQHN-DDCKRLLKLMGVPVVEAPS-EAEAQCAALCK----SGQVYAVASEDMDSLTFGA-PRFLRHLMDPS 147 (364)
Q Consensus 75 ~~~r~~~vt~~~~-~~ik~lL~~~GIp~i~APg-EADaq~A~L~~----~g~v~~ViS~DsD~l~fg~-~~vi~~l~~~~ 147 (364)
.+|+ +.++++|++||||++..|| ||||.||+|++ .|.-+.|+|+|+|++|+.. ++|. ++.+.
T Consensus 105 ---------~~Qi~p~ike~l~a~gi~~l~~~G~EADDiIgTLA~~a~~~g~~V~IvSgDKDl~QLv~~~~V~--~~~~~ 173 (305)
T 3h7i_A 105 ---------FESSHKVIDELKAYMPYIVMDIDKYEANDHIAVLVKKFSLEGHKILIISSDGDFTQLHKYPNVK--QWSPM 173 (305)
T ss_dssp ---------HHHHHHHHHHHHHHSSSEEECCTTCCHHHHHHHHHHHHHHTTCCEEEECSSCCCGGGGGSSSEE--EEETT
T ss_pred ---------hhhhHHHHHHHHHHCCCCEEccCCccHHHHHHHHHHHHHHCCCcEEEEeCCCCccccccCCCeE--EEecC
Confidence 2344 7899999999999999999 99999999987 4666679999999999998 6763 23222
Q ss_pred CCCCccEEEeHHHHHHHcCCCHHHHHHHHHHhCCCCCCCC---CCccHH
Q 017910 148 SRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSI---RGIGGQ 193 (364)
Q Consensus 148 ~~~~~v~~~~~~~v~e~lgl~~~qfidl~iL~G~Dy~d~I---pGIG~k 193 (364)
. .+.|.+++|+ |+|++|+++|+| |.+||| ||||+.
T Consensus 174 ~---------~~~V~ek~Gv-P~q~iD~~aL~G-DsSDNIPGVpGIG~~ 211 (305)
T 3h7i_A 174 H---------KKWVKIKSGS-AEIDCMTKILKG-DKKDNVASVKVRSDF 211 (305)
T ss_dssp T---------TEEECSSCSC-HHHHHHHHHHHC-BGGGTBCCTTSCTTH
T ss_pred C---------HHHHHHHhCC-HHHHhhHHheeC-ccccCCCCCCcCCcc
Confidence 1 1346788998 999999999999 999986 578985
No 12
>2y35_A LD22664P; hydrolase-DNA complex, RNA degradation, exonuclease 5'-3', R interference; 3.20A {Drosophila melanogaster}
Probab=97.62 E-value=0.00056 Score=75.85 Aligned_cols=96 Identities=16% Similarity=0.230 Sum_probs=61.6
Q ss_pred cCCCEEec----cCcHHHHHHHHHHc---------CCeEEEecCCCcccccc----cCe--eEEEeecCCC--C-----C
Q 017910 97 MGVPVVEA----PSEAEAQCAALCKS---------GQVYAVASEDMDSLTFG----APR--FLRHLMDPSS--R-----K 150 (364)
Q Consensus 97 ~GIp~i~A----PgEADaq~A~L~~~---------g~v~~ViS~DsD~l~fg----~~~--vi~~l~~~~~--~-----~ 150 (364)
-++.+|.+ |||+|--|-...+. +...+|++.|.|+++++ .++ ++|.-...+. + .
T Consensus 161 ~~~~Vi~S~~~vPGEGEhKIm~~IR~~~~~p~~~pn~~HciyG~DADLImL~L~the~~f~ilRe~v~f~~~~~~~~~~~ 240 (1140)
T 2y35_A 161 QRCTVILSGQEAPGEGEHKIMDYIRYMKTQPDYDPNTRHCLYGLDAALIILGLCTHELHFVVLREEVKFGRNVKRTSVEE 240 (1140)
T ss_dssp SSSEEEEECSSSCSCHHHHHHHHHHHHHHSTTCCTTCCEEEECCSHHHHHHHHHTTCSSEEEEEESSCTTCCTTCCCGGG
T ss_pred cceEEEEeCCCCCCchHHHHHHHHHHHhhCCCCCCCCeEEEEccCHhHHHHHHccCCCcEEEeecccccccccccccccc
Confidence 36777764 79999766655541 35678999999999986 233 3332111111 0 1
Q ss_pred CccEEEeHHHHHHHc------------CCC----HHHHHHHHHHhCCCCCCCCCCccH
Q 017910 151 IPVMEFEVAKILEEL------------NLT----MDQFIDLCILSGCDYCDSIRGIGG 192 (364)
Q Consensus 151 ~~v~~~~~~~v~e~l------------gl~----~~qfidl~iL~G~Dy~d~IpGIG~ 192 (364)
..+..++...+.+.+ .++ -+.|+.+|.|+|+||.+++|++..
T Consensus 241 ~~f~~l~i~~lReyL~~ef~~~~~~~~~~d~eriidDfVfl~fl~GNDFLP~lp~l~I 298 (1140)
T 2y35_A 241 TRFFLLHLGLLREYLELEFDALRTDEHKLDIAQLIDDWVLMGFLVGNDFIPHLPCLHI 298 (1140)
T ss_dssp CEEEEEEHHHHHHHHHHHGGGGCCSSSCCCHHHHHHHHHHHHHHHCCTTSCCCTTCCT
T ss_pred cceEEEEehHHHHHHHHHhhhhccccccccHHHHHHHHHHHHHHhCCccCCCCCcccc
Confidence 235567766554432 233 357778999999999999998764
No 13
>3pie_A 5'->3' exoribonuclease (XRN1); beta berrel, tudor domain, chromo domain, mRNA turnover, RRN processing, RNA binding, DNA binding; 2.90A {Kluyveromyces lactis} PDB: 3pif_A
Probab=97.47 E-value=0.00079 Score=74.26 Aligned_cols=178 Identities=20% Similarity=0.304 Sum_probs=95.7
Q ss_pred HHHHHHHHHHHcCCCc---E-EEEeCCCCchhhHHHHHHHhhh-hhchHHHHHHHHcCCHH-HHHHHhccccccchhhHH
Q 017910 15 GMFTRTIRLLEAGMKP---I-YVFDGQPPDLKKQELAKRYSKR-ADATDDLAEAVEAGNKE-DIEKFSKRTVKVTKQHND 88 (364)
Q Consensus 15 G~~~r~~~ll~~gi~P---v-~VFDG~~p~~K~~~~~~rk~~R-~~~~~~l~~a~~~g~~~-~~~k~~~r~~~vt~~~~~ 88 (364)
.+|..+-+|+.. ++| + .++||.+|-.|...-..|+-+. .++....+++.+.|+.- .-..|.+.++..=-+-+.
T Consensus 63 ~if~yid~l~~~-vrPrkllyiAiDGVAPrAKmnqQR~RRfrsa~~~~~~~~~~~~~g~~~~~~~~fdsn~ITPGT~FM~ 141 (1155)
T 3pie_A 63 KIFSYIDHLFHT-IKPKQTFYMAIDGVAPRAKMNQQRARRFRTAMDAEKALQKAIENGDELPKGEPFDSNAITPGTEFMA 141 (1155)
T ss_pred HHHHHHHHHHHh-cCcceEEEEEecCCCChhHHHHHHHHHHHhhhhhhHHHHHHHhcCCcCCcccccccccccCCcHHHH
Confidence 444444445554 778 3 3699998865544433332211 11223344555555321 011222222222112333
Q ss_pred HHHHHHHh------------cCCCEEec----cCcHHHHHHHHHHc---------CCeEEEecCCCccccccc----Ce-
Q 017910 89 DCKRLLKL------------MGVPVVEA----PSEAEAQCAALCKS---------GQVYAVASEDMDSLTFGA----PR- 138 (364)
Q Consensus 89 ~ik~lL~~------------~GIp~i~A----PgEADaq~A~L~~~---------g~v~~ViS~DsD~l~fg~----~~- 138 (364)
.+...|+. -++.+|.+ |||+|--|....+. +...+|++.|.|+++++= ++
T Consensus 142 ~L~~~L~~~i~~k~~~d~~w~~~~vi~S~~~vPGEGEhKIm~~IR~~r~~p~y~pn~~H~IyG~DADLImL~L~thep~f 221 (1155)
T 3pie_A 142 KLTENLKYFIHDKITNDTRWQNVKVIFSGHEVPGEGQHKIMDYIRAIRAQEDYNPNTRHCIYGLDADLIILGLSTHDHHF 221 (1155)
T ss_pred HHHHHHHHHHHHHhhCCcCccccEEEEeCCCCCCccHHHHHHHHHHhccCCCCCCCCeEEEeccChhHHHhhhccCCCcE
Confidence 33333321 25667665 79999877766652 346789999999999972 33
Q ss_pred -eEEEe--ecCCC------CCCccEEEeHHHHHHHc-------------CCC----HHHHHHHHHHhCCCCCCCCCCccH
Q 017910 139 -FLRHL--MDPSS------RKIPVMEFEVAKILEEL-------------NLT----MDQFIDLCILSGCDYCDSIRGIGG 192 (364)
Q Consensus 139 -vi~~l--~~~~~------~~~~v~~~~~~~v~e~l-------------gl~----~~qfidl~iL~G~Dy~d~IpGIG~ 192 (364)
++|.- +.... ...++..++..-+.+.+ .++ -+.|+.+|.|+|+||.+++|.+.+
T Consensus 222 ~iLRe~v~f~~~~~~~~~~~~~~f~~l~i~~LREyL~~ef~~~~~~~~~~~d~ERiiDDfVflcf~vGNDFLPhlP~l~I 301 (1155)
T 3pie_A 222 CLLREEVTFGKRSSSVKTLETQNFFLLHLSILREYLALEFEEITDSVQFEYDFERVLDDFIFVLFTIGNDFLPNLPDLHL 301 (1155)
T ss_pred EEEeeccccCcccccccccccCCeEEEEHHHHHHHHHHHHHhhccccCCCccHhHhhcceeeehhhhCcccCCCCCccCc
Confidence 34432 11111 11245567775544432 122 246777999999999999998765
Q ss_pred H
Q 017910 193 Q 193 (364)
Q Consensus 193 k 193 (364)
.
T Consensus 302 ~ 302 (1155)
T 3pie_A 302 K 302 (1155)
T ss_pred C
Confidence 4
No 14
>3fqd_A Protein DHP1, 5'-3' exoribonuclease 2; protein-protein complex, exonuclease, hydrolase, mRNA proces nuclease, nucleus, rRNA processing, transcription; 2.20A {Schizosaccharomyces pombe}
Probab=96.95 E-value=0.0041 Score=66.83 Aligned_cols=95 Identities=21% Similarity=0.306 Sum_probs=62.2
Q ss_pred CCCEEec----cCcHHHHHHHHHHc---------CCeEEEecCCCcccccc----cCe--eEEEeecCCC----------
Q 017910 98 GVPVVEA----PSEAEAQCAALCKS---------GQVYAVASEDMDSLTFG----APR--FLRHLMDPSS---------- 148 (364)
Q Consensus 98 GIp~i~A----PgEADaq~A~L~~~---------g~v~~ViS~DsD~l~fg----~~~--vi~~l~~~~~---------- 148 (364)
++.+|.+ |||+|--|....+. +...+|++.|.|+++++ .++ ++|.-...+.
T Consensus 195 ~~~VIlSd~~vPGEGEHKIm~fIR~~r~~p~ydpN~~HcIyGlDADLImL~LatHep~f~ILRE~v~~~~~q~~~~~~~~ 274 (899)
T 3fqd_A 195 NVRFILSDASVPGEGEHKIMEFIRSQRVKPEYDPNTHHVVYGLDADLIMLGLATHEPHFRVLREDVFFQQGSTKKTKEER 274 (899)
T ss_dssp TCEEEEECTTSCSCHHHHHHHHHHHHHTSTTSCTTCCEEEECCCTTHHHHHHHTTCSSEEEEEECCC---------CTTT
T ss_pred cceEEEeCCCCCCccHHHHHHHHHHHhcCCCCCCCCeEEEEccCccHhHHhhhccCCceEEEeeecccCcCccccchhhh
Confidence 6777765 79999877776652 35678999999999997 233 3432110000
Q ss_pred ----------------CCCccEEEeHHHHHHH----cCC-------C----HHHHHHHHHHhCCCCCCCCCCccH
Q 017910 149 ----------------RKIPVMEFEVAKILEE----LNL-------T----MDQFIDLCILSGCDYCDSIRGIGG 192 (364)
Q Consensus 149 ----------------~~~~v~~~~~~~v~e~----lgl-------~----~~qfidl~iL~G~Dy~d~IpGIG~ 192 (364)
...++..+++.-+.+. +.+ + -+.||.+|.|+|+||.+++|.+-+
T Consensus 275 ~~~~k~~~~~~~~~~~~~~~f~~l~i~iLREYL~~E~~~~~~~f~~d~ERiIDDfVfmcFfvGNDFLPhlP~l~I 349 (899)
T 3fqd_A 275 LGIKRLDDVSETNKVPVKKPFIWLNVSILREYLEVELYVPNLPFPFDLERAIDDWVFFIFFVGNDFLPHLPSLDI 349 (899)
T ss_dssp TTCCBTTC----------CCEEEEEHHHHHHHHHHHHCCTTCSSCCCHHHHHHHHHHHGGGGCCSSSCCCTTCCG
T ss_pred ccccccccccccccccccCceEEEeHHHHHHHHHHHhcccCCCCCchhhhhhhhhhhhhHhhCcccCCCCCccCc
Confidence 0124566777655543 332 2 258888999999999999996553
No 15
>2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 PDB: 2kn7_A*
Probab=96.71 E-value=0.00073 Score=49.74 Aligned_cols=26 Identities=12% Similarity=0.262 Sum_probs=23.9
Q ss_pred CCCCCccHHHHHHHHHHcCCHHHHHH
Q 017910 185 DSIRGIGGQTALKLIRQHGSIETILE 210 (364)
Q Consensus 185 d~IpGIG~ktA~kLik~~gsle~il~ 210 (364)
+.|||||++++..|++.|||+++|.+
T Consensus 7 ~~IpGIG~kr~~~LL~~Fgs~~~i~~ 32 (63)
T 2a1j_A 7 LKMPGVNAKNCRSLMHHVKNIAELAA 32 (63)
T ss_dssp HTSTTCCHHHHHHHHHHCSSHHHHHT
T ss_pred HcCCCCCHHHHHHHHHHcCCHHHHHH
Confidence 57999999999999999999998863
No 16
>1z00_B DNA repair endonuclease XPF; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 PDB: 2aq0_A*
Probab=96.27 E-value=0.0024 Score=49.80 Aligned_cols=26 Identities=12% Similarity=0.262 Sum_probs=23.8
Q ss_pred CCCCCccHHHHHHHHHHcCCHHHHHH
Q 017910 185 DSIRGIGGQTALKLIRQHGSIETILE 210 (364)
Q Consensus 185 d~IpGIG~ktA~kLik~~gsle~il~ 210 (364)
+.|||||++++..||+.|||+++|.+
T Consensus 21 ~~IpGIG~kr~~~LL~~FgSl~~i~~ 46 (84)
T 1z00_B 21 LKMPGVNAKNCRSLMHHVKNIAELAA 46 (84)
T ss_dssp HTCSSCCHHHHHHHHHHSSCHHHHHH
T ss_pred HhCCCCCHHHHHHHHHHcCCHHHHHH
Confidence 46999999999999999999999864
No 17
>1z00_A DNA excision repair protein ERCC-1; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5
Probab=94.97 E-value=0.018 Score=44.73 Aligned_cols=26 Identities=15% Similarity=0.475 Sum_probs=23.6
Q ss_pred CCCCCccHHHHHHHHHHcCCHHHHHH
Q 017910 185 DSIRGIGGQTALKLIRQHGSIETILE 210 (364)
Q Consensus 185 d~IpGIG~ktA~kLik~~gsle~il~ 210 (364)
.+|||||+++|.+|++.||+++++++
T Consensus 22 ~~IpgIG~~~A~~Ll~~fgsl~~l~~ 47 (89)
T 1z00_A 22 TTVKSVNKTDSQTLLTTFGSLEQLIA 47 (89)
T ss_dssp TTSSSCCHHHHHHHHHHTCBHHHHHH
T ss_pred HcCCCCCHHHHHHHHHHCCCHHHHHh
Confidence 46999999999999999999988874
No 18
>1kft_A UVRC, excinuclease ABC subunit C; helix-hairpin-helix, HHH domain, DNA-binding domain, DNA binding protein; NMR {Escherichia coli} SCOP: a.60.2.3
Probab=94.94 E-value=0.0094 Score=45.17 Aligned_cols=27 Identities=19% Similarity=0.484 Sum_probs=24.0
Q ss_pred CCCCCccHHHHHHHHHHcCCHHHHHHH
Q 017910 185 DSIRGIGGQTALKLIRQHGSIETILEN 211 (364)
Q Consensus 185 d~IpGIG~ktA~kLik~~gsle~il~~ 211 (364)
.+|||||+++|.+|++.|++++++++.
T Consensus 27 ~~I~gIG~~~A~~Ll~~fgsl~~l~~a 53 (78)
T 1kft_A 27 ETIEGVGPKRRQMLLKYMGGLQGLRNA 53 (78)
T ss_dssp GGCTTCSSSHHHHHHHHHSCHHHHHHC
T ss_pred hcCCCCCHHHHHHHHHHcCCHHHHHHC
Confidence 369999999999999999999988753
No 19
>1x2i_A HEF helicase/nuclease; alpha helix, helix-hairpin-helix DNA binding domain, homodimer, hydrolase; 1.45A {Pyrococcus furiosus} SCOP: a.60.2.5
Probab=94.93 E-value=0.019 Score=42.55 Aligned_cols=25 Identities=20% Similarity=0.499 Sum_probs=23.1
Q ss_pred CCCCccHHHHHHHHHHcCCHHHHHH
Q 017910 186 SIRGIGGQTALKLIRQHGSIETILE 210 (364)
Q Consensus 186 ~IpGIG~ktA~kLik~~gsle~il~ 210 (364)
+|||||+++|..|+..|+++++++.
T Consensus 18 ~i~giG~~~a~~Ll~~fgs~~~l~~ 42 (75)
T 1x2i_A 18 GLPHVSATLARRLLKHFGSVERVFT 42 (75)
T ss_dssp TSTTCCHHHHHHHHHHHCSHHHHHH
T ss_pred CCCCCCHHHHHHHHHHcCCHHHHHh
Confidence 6999999999999999999998864
No 20
>2a1j_B DNA excision repair protein ERCC-1; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5
Probab=94.49 E-value=0.026 Score=44.03 Aligned_cols=25 Identities=16% Similarity=0.494 Sum_probs=22.8
Q ss_pred CCCCccHHHHHHHHHHcCCHHHHHH
Q 017910 186 SIRGIGGQTALKLIRQHGSIETILE 210 (364)
Q Consensus 186 ~IpGIG~ktA~kLik~~gsle~il~ 210 (364)
+|||||+++|.+|++.|++++++++
T Consensus 36 ~IpgIG~~~A~~Ll~~fgs~~~l~~ 60 (91)
T 2a1j_B 36 TVKSVNKTDSQTLLTTFGSLEQLIA 60 (91)
T ss_dssp TSTTCCHHHHHHHHHHHSSHHHHHS
T ss_pred cCCCCCHHHHHHHHHHCCCHHHHHh
Confidence 5899999999999999999988763
No 21
>2nrt_A Uvrabc system protein C; UVRC, endonuclease, RNAse H, helix hairpin helix, NER, hydrolase; 1.50A {Thermotoga maritima} PDB: 2nrv_A 2nrw_A 2nrx_A 2nrz_A
Probab=94.16 E-value=0.026 Score=51.59 Aligned_cols=26 Identities=42% Similarity=0.631 Sum_probs=24.0
Q ss_pred CCCCCccHHHHHHHHHHcCCHHHHHH
Q 017910 185 DSIRGIGGQTALKLIRQHGSIETILE 210 (364)
Q Consensus 185 d~IpGIG~ktA~kLik~~gsle~il~ 210 (364)
++|||||+++|..|++.|||+++|.+
T Consensus 171 dgIpGIG~k~ak~Ll~~FgSl~~i~~ 196 (220)
T 2nrt_A 171 DNVPGIGPIRKKKLIEHFGSLENIRS 196 (220)
T ss_dssp TTSTTCCHHHHHHHHHHHCSHHHHHT
T ss_pred cCCCCcCHHHHHHHHHHcCCHHHHHh
Confidence 78999999999999999999998753
No 22
>3c65_A Uvrabc system protein C; UVRC, endonuclease, nucleotide excision repair, DNA repair, RNAse H, cytoplasm, DNA damage, DNA excision; 1.90A {Bacillus stearothermophilus}
Probab=91.27 E-value=0.038 Score=50.67 Aligned_cols=27 Identities=30% Similarity=0.534 Sum_probs=0.0
Q ss_pred CCCCCCccHHHHHHHHHHcCCHHHHHH
Q 017910 184 CDSIRGIGGQTALKLIRQHGSIETILE 210 (364)
Q Consensus 184 ~d~IpGIG~ktA~kLik~~gsle~il~ 210 (364)
.++|||||+++|..|++.|||+++|.+
T Consensus 175 L~~IpGIG~k~ak~Ll~~FGSl~~i~~ 201 (226)
T 3c65_A 175 LDDIPGVGEKRKKALLNYFGSVKKMKE 201 (226)
T ss_dssp ---------------------------
T ss_pred ccccCCCCHHHHHHHHHHhCCHHHHHh
Confidence 368999999999999999999998764
No 23
>2bgw_A XPF endonuclease; hydrolase, structure specific endonuclease, nucleotide excision repair; 2.8A {Aeropyrum pernix} SCOP: a.60.2.5 c.52.1.20 PDB: 2bhn_A
Probab=88.61 E-value=0.2 Score=45.08 Aligned_cols=25 Identities=36% Similarity=0.668 Sum_probs=22.7
Q ss_pred CCCCccHHHHHHHHHHcCCHHHHHH
Q 017910 186 SIRGIGGQTALKLIRQHGSIETILE 210 (364)
Q Consensus 186 ~IpGIG~ktA~kLik~~gsle~il~ 210 (364)
+|||||+++|..|++.||+++++++
T Consensus 166 ~i~gVg~~~a~~Ll~~fgs~~~l~~ 190 (219)
T 2bgw_A 166 SFPGIGRRTAERILERFGSLERFFT 190 (219)
T ss_dssp TSTTCCHHHHHHHHHHHSSHHHHTT
T ss_pred cCCCCCHHHHHHHHHHcCCHHHHHh
Confidence 5999999999999999999888753
No 24
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=87.79 E-value=1.4 Score=39.71 Aligned_cols=108 Identities=14% Similarity=0.227 Sum_probs=53.2
Q ss_pred HHHcCCCHHHHHHHHHHhCCCCCCCCCCccHHHHHHHHHHcCCHHHHHHHHHhcc----CCCCCCcchHHHHHHh---CC
Q 017910 162 LEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRER----YQIPEDWPYQEARRLF---KE 234 (364)
Q Consensus 162 ~e~lgl~~~qfidl~iL~G~Dy~d~IpGIG~ktA~kLik~~gsle~il~~l~~~k----~~i~e~~~~~~~~~lf---~~ 234 (364)
...||+....-.++..++. +|+|||||+|..++..|+. +.+...+.... .++|- +-.+.|..+. ..
T Consensus 73 ~~LyGF~~~~Er~lf~~L~-----sv~GIGpk~A~~Ils~~~~-~~l~~aI~~~d~~~L~~vpG-IG~KtA~rIi~elk~ 145 (212)
T 2ztd_A 73 MTLYGFPDGETRDLFLTLL-----SVSGVGPRLAMAALAVHDA-PALRQVLADGNVAALTRVPG-IGKRGAERMVLELRD 145 (212)
T ss_dssp EEEEEESSHHHHHHHHHHH-----TSTTCCHHHHHHHHHHSCH-HHHHHHHHTTCHHHHHTSTT-CCHHHHHHHHHHHTT
T ss_pred cceEecCcHHHHHHHHHhc-----CcCCcCHHHHHHHHHhCCH-HHHHHHHHhCCHHHHhhCCC-CCHHHHHHHHHHHHH
Confidence 4456765444445555444 3999999999999999874 44433221100 01211 1112222221 12
Q ss_pred CCcCCccccccCCCCCC-CHHHHHHHHHHhcCCChHHHHHHHHHH
Q 017910 235 PEVVTDEEQLQIKWSAP-DEEGLINFLVSENGFNSDRVTKAIEKI 278 (364)
Q Consensus 235 p~V~~~~~~~~l~~~~p-d~e~L~~fl~~e~~f~~~rv~~~l~~l 278 (364)
......... .-.-... ..+...+-| ..+||++..+.+++..+
T Consensus 146 kl~~~~~~~-~~~~~~~~~~~ea~~AL-~~LGy~~~ea~~av~~~ 188 (212)
T 2ztd_A 146 KVGVAATGG-ALSTNGHAVRSPVVEAL-VGLGFAAKQAEEATDTV 188 (212)
T ss_dssp TCC--------------CCHHHHHHHH-HHTTCCHHHHHHHHHHH
T ss_pred hhccccccc-cccccCcccHHHHHHHH-HHcCCCHHHHHHHHHHH
Confidence 111000000 0000011 334555655 48999999999998876
No 25
>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2
Probab=86.98 E-value=0.28 Score=43.68 Aligned_cols=87 Identities=16% Similarity=0.169 Sum_probs=26.3
Q ss_pred CCCCccHHHHHHHHHHcCCHHHHHHHHHhcc----CCCCCCcchHHHHHHh---CCCCcC-CccccccCCCCCCCHHHHH
Q 017910 186 SIRGIGGQTALKLIRQHGSIETILENINRER----YQIPEDWPYQEARRLF---KEPEVV-TDEEQLQIKWSAPDEEGLI 257 (364)
Q Consensus 186 ~IpGIG~ktA~kLik~~gsle~il~~l~~~k----~~i~e~~~~~~~~~lf---~~p~V~-~~~~~~~l~~~~pd~e~L~ 257 (364)
+|||||||+|..|+..|++ +.+.+.+.... .++| .+..+.|..++ ...... .... . .-.....+...
T Consensus 76 ~v~GIGpk~A~~iL~~f~~-~~l~~aI~~~d~~~L~~vp-GIG~K~A~rI~~~lk~k~~~~~~~~--~-~~~~~~~~ea~ 150 (191)
T 1ixr_A 76 SVSGVGPKVALALLSALPP-RLLARALLEGDARLLTSAS-GVGRRLAERIALELKGKVPPHLLAG--E-KVESEAAEEAV 150 (191)
T ss_dssp SSSCCCHHHHHHHHHHSCH-HHHHHHHHTTCHHHHTTST-TCCHHHHHHHHHHHTTTSCSCC------------------
T ss_pred cCCCcCHHHHHHHHHhCCh-HHHHHHHHhCCHHHHHhCC-CCCHHHHHHHHHHHHHhhccccccc--c-ccccccHHHHH
Confidence 3999999999999999997 33433332110 1222 12223333332 222211 0000 0 00011223455
Q ss_pred HHHHHhcCCChHHHHHHHHHH
Q 017910 258 NFLVSENGFNSDRVTKAIEKI 278 (364)
Q Consensus 258 ~fl~~e~~f~~~rv~~~l~~l 278 (364)
+-| ..+||++..+.++++.+
T Consensus 151 ~AL-~~LGy~~~ea~~av~~~ 170 (191)
T 1ixr_A 151 MAL-AALGFKEAQARAVVLDL 170 (191)
T ss_dssp ---------------------
T ss_pred HHH-HHcCCCHHHHHHHHHHH
Confidence 555 48999998888888765
No 26
>4gfj_A Topoisomerase V; helix-hairpin-helix, DNA repair enzyme, DNA B isomerase; 2.91A {Methanopyrus kandleri AV19}
Probab=86.24 E-value=0.43 Score=47.44 Aligned_cols=25 Identities=36% Similarity=0.591 Sum_probs=23.1
Q ss_pred CCCCccHHHHHHHHHHcCCHHHHHH
Q 017910 186 SIRGIGGQTALKLIRQHGSIETILE 210 (364)
Q Consensus 186 ~IpGIG~ktA~kLik~~gsle~il~ 210 (364)
.||||||.+|..||.+|||++.|..
T Consensus 472 AIaGIGp~tAeRLLEkFGSVe~Vm~ 496 (685)
T 4gfj_A 472 SIRGIDRERAERLLKKYGGYSKVRE 496 (685)
T ss_dssp TSTTCCHHHHHHHHHHHTSHHHHHH
T ss_pred ccCCCCHHHHHHHHHHhcCHHHHHh
Confidence 4899999999999999999998875
No 27
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=83.75 E-value=0.48 Score=42.55 Aligned_cols=18 Identities=22% Similarity=0.468 Sum_probs=17.4
Q ss_pred CCCccHHHHHHHHHHcCC
Q 017910 187 IRGIGGQTALKLIRQHGS 204 (364)
Q Consensus 187 IpGIG~ktA~kLik~~gs 204 (364)
|+|||||+|..|+..|++
T Consensus 78 V~GIGpk~A~~iL~~f~~ 95 (203)
T 1cuk_A 78 TNGVGPKLALAILSGMSA 95 (203)
T ss_dssp SSSCCHHHHHHHHHHSCH
T ss_pred CCCcCHHHHHHHHhhCCh
Confidence 999999999999999997
No 28
>1s5l_U Photosystem II 12 kDa extrinsic protein; photosynthesis, oxygen-evolving, tetra- manganese, membrane; HET: CL1 PHO HEM PL9 LMT BCR; 3.50A {Thermosynechococcus elongatus}
Probab=75.80 E-value=0.66 Score=38.97 Aligned_cols=24 Identities=25% Similarity=0.379 Sum_probs=18.8
Q ss_pred CCCCccHHHHHHHHHH--cCCHHHHH
Q 017910 186 SIRGIGGQTALKLIRQ--HGSIETIL 209 (364)
Q Consensus 186 ~IpGIG~ktA~kLik~--~gsle~il 209 (364)
.+|||||++|.++|+. |.|+|+++
T Consensus 67 ~LpGiGp~~A~~II~~GpF~svedL~ 92 (134)
T 1s5l_U 67 QYRGLYPTLAKLIVKNAPYESVEDVL 92 (134)
T ss_dssp GSTTCTHHHHHHHHHTCCCSSGGGGG
T ss_pred HCCCCCHHHHHHHHHcCCCCCHHHHH
Confidence 3799999999999954 55676664
No 29
>1vq8_Y 50S ribosomal protein L32E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.9.2.1 PDB: 1vq4_Y* 1vq5_Y* 1vq6_Y* 1vq7_Y* 1s72_Y* 1vq9_Y* 1vqk_Y* 1vql_Y* 1vqm_Y* 1vqn_Y* 1vqo_Y* 1vqp_Y* 1yhq_Y* 1yi2_Y* 1yij_Y* 1yit_Y* 1yj9_Y* 1yjn_Y* 1yjw_Y* 2otj_Y* ...
Probab=74.25 E-value=0.64 Score=42.84 Aligned_cols=25 Identities=28% Similarity=0.397 Sum_probs=0.0
Q ss_pred CCCCCccHHHHHHHHHH-cCCHHHHH
Q 017910 185 DSIRGIGGQTALKLIRQ-HGSIETIL 209 (364)
Q Consensus 185 d~IpGIG~ktA~kLik~-~gsle~il 209 (364)
..||||||++|..|+.. |++++.|.
T Consensus 18 ~~IpGIGpk~a~~Ll~~gf~sve~L~ 43 (241)
T 1vq8_Y 18 TDISGVGPSKAESLREAGFESVEDVR 43 (241)
T ss_dssp --------------------------
T ss_pred hcCCCCCHHHHHHHHHcCCCCHHHHH
Confidence 46899999999999998 88988885
No 30
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli}
Probab=68.60 E-value=2.6 Score=44.31 Aligned_cols=25 Identities=32% Similarity=0.421 Sum_probs=21.7
Q ss_pred CCCCCccHHHHHHHHHHcCCHHHHH
Q 017910 185 DSIRGIGGQTALKLIRQHGSIETIL 209 (364)
Q Consensus 185 d~IpGIG~ktA~kLik~~gsle~il 209 (364)
.+|||||+++|..|++.|+|++++.
T Consensus 515 lgi~~VG~~~Ak~La~~Fgsl~~l~ 539 (671)
T 2owo_A 515 LGIREVGEATAAGLAAYFGTLEALE 539 (671)
T ss_dssp TTCTTCCHHHHHHHHHHHCSHHHHH
T ss_pred hcccCccHHHHHHHHHHcCCHHHHH
Confidence 4789999999999999999988875
No 31
>3sgi_A DNA ligase; HET: DNA AMP; 3.50A {Mycobacterium tuberculosis}
Probab=67.83 E-value=1.1 Score=46.72 Aligned_cols=27 Identities=33% Similarity=0.445 Sum_probs=0.0
Q ss_pred CCCCCccHHHHHHHHHHcCCHHHHHHH
Q 017910 185 DSIRGIGGQTALKLIRQHGSIETILEN 211 (364)
Q Consensus 185 d~IpGIG~ktA~kLik~~gsle~il~~ 211 (364)
-||||||+++|..|++.|+|++.+.+.
T Consensus 532 LGIp~VG~~~ak~La~~Fgsle~L~~A 558 (615)
T 3sgi_A 532 LSIRHVGPTAARALATEFGSLDAIAAA 558 (615)
T ss_dssp ---------------------------
T ss_pred cCCCCCCHHHHHHHHHHcCCHHHHHhC
Confidence 468999999999999999999887653
No 32
>3maj_A DNA processing chain A; MCSG, PSI-2, structural genomics, protein structure initiati midwest center for structural genomics; HET: DNA; 2.05A {Rhodopseudomonas palustris}
Probab=67.54 E-value=7.1 Score=38.27 Aligned_cols=41 Identities=34% Similarity=0.365 Sum_probs=33.2
Q ss_pred CCHHHHHHHHHHhCCCCCCCCCCccHHHHHHHHHHcCCHHHHHHHHH
Q 017910 167 LTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENIN 213 (364)
Q Consensus 167 l~~~qfidl~iL~G~Dy~d~IpGIG~ktA~kLik~~gsle~il~~l~ 213 (364)
++.++......|.- +||||++++.+|++.||+.+++++.+.
T Consensus 17 m~~~e~~~wL~L~~------~~gvG~~~~~~Ll~~fgs~~~~~~a~~ 57 (382)
T 3maj_A 17 LTEAQRIDWMRLIR------AENVGPRTFRSLINHFGSARAALERLP 57 (382)
T ss_dssp SCHHHHHHHHHHHT------STTCCHHHHHHHHHHHSSHHHHHHHHH
T ss_pred CCHHHHHHHHHHHc------CCCCCHHHHHHHHHHcCCHHHHHHcCH
Confidence 45666666666654 689999999999999999999987653
No 33
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ...
Probab=66.64 E-value=3.4 Score=39.65 Aligned_cols=26 Identities=35% Similarity=0.399 Sum_probs=21.5
Q ss_pred CCCCccHHHHHHHHHH-cCCHHHHHHH
Q 017910 186 SIRGIGGQTALKLIRQ-HGSIETILEN 211 (364)
Q Consensus 186 ~IpGIG~ktA~kLik~-~gsle~il~~ 211 (364)
+|||||||||.+|..+ +.|+|++.+.
T Consensus 100 ~v~GiG~k~a~~l~~~Gi~tledL~~a 126 (335)
T 2bcq_A 100 NIWGAGTKTAQMWYQQGFRSLEDIRSQ 126 (335)
T ss_dssp TSTTCCHHHHHHHHHTTCCSHHHHHHH
T ss_pred cCCCcCHHHHHHHHHcCCCCHHHHHHH
Confidence 6899999999999876 3388888764
No 34
>2ziu_A MUS81 protein; helix-hairpin-helix, alternative splicing, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium; 2.70A {Danio rerio} PDB: 2ziv_A 2ziw_A
Probab=66.58 E-value=4.2 Score=38.27 Aligned_cols=29 Identities=17% Similarity=0.525 Sum_probs=26.8
Q ss_pred CCCCccHHHHHHHHHHcCCHHHHHHHHHh
Q 017910 186 SIRGIGGQTALKLIRQHGSIETILENINR 214 (364)
Q Consensus 186 ~IpGIG~ktA~kLik~~gsle~il~~l~~ 214 (364)
.||||++..|..++++|+|+..+++..+.
T Consensus 241 ~IpGVs~~~A~~I~~~ypTp~~L~~Ay~~ 269 (311)
T 2ziu_A 241 QISGVSGDKAAAVLEHYSTVSSLLQAYDK 269 (311)
T ss_dssp TBTTCCHHHHHHHHHHCSSHHHHHHHHHH
T ss_pred hccCCCHHHHHHHHHHCCCHHHHHHHHHh
Confidence 48999999999999999999999998865
No 35
>2w9m_A Polymerase X; SAXS, DNA repair, DNA polymerase, DNA replication; 2.46A {Deinococcus radiodurans}
Probab=66.17 E-value=7 Score=40.16 Aligned_cols=26 Identities=27% Similarity=0.403 Sum_probs=16.2
Q ss_pred CCCCccHHHHHHHHHH-cCCHHHHHHH
Q 017910 186 SIRGIGGQTALKLIRQ-HGSIETILEN 211 (364)
Q Consensus 186 ~IpGIG~ktA~kLik~-~gsle~il~~ 211 (364)
+|+|||||+|.+|+.+ +.|++++.+.
T Consensus 101 ~v~GVGpk~A~~i~~~G~~s~edL~~a 127 (578)
T 2w9m_A 101 GVRGLGPKKIRSLWLAGIDSLERLREA 127 (578)
T ss_dssp TSTTCCHHHHHHHHHTTCCSHHHHHHH
T ss_pred CCCCcCHHHHHHHHHcCCCCHHHHHHH
Confidence 4666777777777665 3466666554
No 36
>2duy_A Competence protein comea-related protein; helix-hairpin-helix, structural genomics, NPPSFA; 1.75A {Thermus thermophilus} SCOP: a.60.2.7
Probab=65.87 E-value=2.8 Score=30.87 Aligned_cols=17 Identities=24% Similarity=0.483 Sum_probs=15.1
Q ss_pred CCCCccHHHHHHHHHHc
Q 017910 186 SIRGIGGQTALKLIRQH 202 (364)
Q Consensus 186 ~IpGIG~ktA~kLik~~ 202 (364)
.|||||+++|.+++..+
T Consensus 31 ~ipGIG~~~A~~Il~~r 47 (75)
T 2duy_A 31 ALPGIGPVLARRIVEGR 47 (75)
T ss_dssp TSTTCCHHHHHHHHHTC
T ss_pred hCCCCCHHHHHHHHHHc
Confidence 57999999999999865
No 37
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ...
Probab=63.36 E-value=3.4 Score=39.62 Aligned_cols=25 Identities=24% Similarity=0.473 Sum_probs=21.0
Q ss_pred CCCCccHHHHHHHHHH-cCCHHHHHH
Q 017910 186 SIRGIGGQTALKLIRQ-HGSIETILE 210 (364)
Q Consensus 186 ~IpGIG~ktA~kLik~-~gsle~il~ 210 (364)
+|||||||||.+|..+ +.|++++.+
T Consensus 102 ~V~GiGpk~a~~l~~~Gi~tledL~~ 127 (335)
T 2fmp_A 102 RVSGIGPSAARKFVDEGIKTLEDLRK 127 (335)
T ss_dssp TSTTCCHHHHHHHHHTTCCSHHHHHT
T ss_pred CCCCCCHHHHHHHHHcCCCCHHHHHH
Confidence 6899999999999887 238888876
No 38
>1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus musculus} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1kdh_A* 1kej_A*
Probab=62.95 E-value=4.1 Score=39.82 Aligned_cols=25 Identities=32% Similarity=0.413 Sum_probs=20.7
Q ss_pred CCCCccHHHHHHHHHH-cCCHHHHHH
Q 017910 186 SIRGIGGQTALKLIRQ-HGSIETILE 210 (364)
Q Consensus 186 ~IpGIG~ktA~kLik~-~gsle~il~ 210 (364)
+|||||||||.+|.++ +.|+|++.+
T Consensus 125 ~I~GvGpk~a~~ly~~Gi~tledL~~ 150 (381)
T 1jms_A 125 SVFGVGLKTAEKWFRMGFRTLSKIQS 150 (381)
T ss_dssp TSTTCCHHHHHHHHHTTCCSHHHHHH
T ss_pred ccCCCCHHHHHHHHHcCCCcHHHHHh
Confidence 5899999999999887 237888775
No 39
>3c1y_A DNA integrity scanning protein DISA; DNA damage, DNA repair, DNA-binding, DNA binding protein; HET: DNA 2BA; 2.10A {Thermotoga maritima} PDB: 3c1z_A* 3c21_A* 3c23_A*
Probab=62.47 E-value=3.5 Score=40.38 Aligned_cols=25 Identities=12% Similarity=0.236 Sum_probs=23.0
Q ss_pred CCCccHHHHHHHHHHcCCHHHHHHH
Q 017910 187 IRGIGGQTALKLIRQHGSIETILEN 211 (364)
Q Consensus 187 IpGIG~ktA~kLik~~gsle~il~~ 211 (364)
||+||++.|-+|+.+|||+++|++.
T Consensus 320 IPrl~~~iae~Lv~~FGsLq~Il~A 344 (377)
T 3c1y_A 320 VARIPLSIGYNVVRMFKTLDQISKA 344 (377)
T ss_dssp TSCCCHHHHHHHHHHHCSHHHHTTC
T ss_pred CCCCCHHHHHHHHHHhCCHHHHHhC
Confidence 7999999999999999999999753
No 40
>2i5h_A Hypothetical protein AF1531; PFAM:DUF655, PSI-2, structural genomics, protein structure initiative; 1.74A {Archaeoglobus fulgidus} SCOP: e.71.1.1
Probab=61.30 E-value=5.7 Score=35.52 Aligned_cols=47 Identities=15% Similarity=0.338 Sum_probs=32.0
Q ss_pred CCCHHHHHHHHHHhCC---CCC--CCCCCccHHHHHHHHHH-----cCCHHHHHHHH
Q 017910 166 NLTMDQFIDLCILSGC---DYC--DSIRGIGGQTALKLIRQ-----HGSIETILENI 212 (364)
Q Consensus 166 gl~~~qfidl~iL~G~---Dy~--d~IpGIG~ktA~kLik~-----~gsle~il~~l 212 (364)
.-..+.|+++..-++- +.. ..+||||+++|..+|.. |.|+|++.+.+
T Consensus 111 ~~~E~~fv~f~n~a~pITA~~~eL~~LpGIG~k~A~~IIeyRe~G~F~s~eDL~~RV 167 (205)
T 2i5h_A 111 KQDEKKYVDFFNKADSITTRMHQLELLPGVGKKMMWAIIEERKKRPFESFEDIAQRV 167 (205)
T ss_dssp HTTHHHHHHHHC--CCBCSSSBGGGGSTTCCHHHHHHHHHHHHHSCCCSHHHHHHHS
T ss_pred HhchhhhhhhccccCCccCCHHHHhcCCCcCHHHHHHHHHHHhcCCCCCHHHHHHhc
Confidence 3456788887654442 111 24799999999999974 77888887654
No 41
>3b0x_A DNA polymerase beta family (X family); structural genomics, riken structural genomics/proteomics in RSGI, polxc, PHP, DRP lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB: 3au2_A* 3au6_A* 3auo_A* 3b0y_A*
Probab=61.05 E-value=5.4 Score=40.96 Aligned_cols=27 Identities=26% Similarity=0.393 Sum_probs=19.7
Q ss_pred CCCCccHHHHHHHHHH--cCCHHHHHHHH
Q 017910 186 SIRGIGGQTALKLIRQ--HGSIETILENI 212 (364)
Q Consensus 186 ~IpGIG~ktA~kLik~--~gsle~il~~l 212 (364)
+|+|||||+|..++.. +.+++++.+.+
T Consensus 97 ~v~GvGpk~A~~~~~~lg~~~~~~l~~a~ 125 (575)
T 3b0x_A 97 EVPGVGPKTARLLYEGLGIDSLEKLKAAL 125 (575)
T ss_dssp TSTTTCHHHHHHHHHTSCCCSHHHHHHHH
T ss_pred cCCCcCHHHHHHHHHhcCCCCHHHHHHHH
Confidence 4778888888888875 45777776654
No 42
>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus}
Probab=60.78 E-value=4.5 Score=39.19 Aligned_cols=24 Identities=17% Similarity=0.357 Sum_probs=19.9
Q ss_pred CCCCccHHHHHHHHHH-cCCHHHHH
Q 017910 186 SIRGIGGQTALKLIRQ-HGSIETIL 209 (364)
Q Consensus 186 ~IpGIG~ktA~kLik~-~gsle~il 209 (364)
+|||||||||.+|.++ +.|++++.
T Consensus 106 ~I~GvG~kta~~l~~~Gi~tledL~ 130 (360)
T 2ihm_A 106 QVFGVGVKTANRWYQEGLRTLDELR 130 (360)
T ss_dssp TSTTCCHHHHHHHHHTTCCSHHHHH
T ss_pred CCCCCCHHHHHHHHHcCCCCHHHHH
Confidence 6899999999999887 23788776
No 43
>3arc_U Photosystem II 12 kDa extrinsic protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3bz1_U* 2axt_U* 3bz2_U* 3kzi_U* 3prq_U* 3prr_U* 3a0b_U* 3a0h_U*
Probab=60.07 E-value=2.2 Score=33.73 Aligned_cols=23 Identities=22% Similarity=0.338 Sum_probs=17.3
Q ss_pred CCCCccHHHHHHHHHH--cCCHHHH
Q 017910 186 SIRGIGGQTALKLIRQ--HGSIETI 208 (364)
Q Consensus 186 ~IpGIG~ktA~kLik~--~gsle~i 208 (364)
.|||||++.|.++|.. |.|++++
T Consensus 30 ~lpGIG~~~A~~IV~~GpF~s~edL 54 (97)
T 3arc_U 30 QYRGLYPTLAKLIVKNAPYESVEDV 54 (97)
T ss_dssp GSTTCTTHHHHHHHHHCCCSSGGGG
T ss_pred HCCCCCHHHHHHHHHcCCCCCHHHH
Confidence 4799999999999983 3455544
No 44
>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2 PDB: 1v9p_A*
Probab=60.05 E-value=4.1 Score=42.84 Aligned_cols=25 Identities=28% Similarity=0.550 Sum_probs=22.4
Q ss_pred CCCCCccHHHHHHHHHHcCCHHHHH
Q 017910 185 DSIRGIGGQTALKLIRQHGSIETIL 209 (364)
Q Consensus 185 d~IpGIG~ktA~kLik~~gsle~il 209 (364)
-||||||+++|..|++.|||++.+.
T Consensus 510 lGI~~VG~~~Ak~La~~Fgsl~~l~ 534 (667)
T 1dgs_A 510 LGLPGVGEVLARNLARRFGTMDRLL 534 (667)
T ss_dssp TTCSSCCHHHHHHHHHTTSBHHHHT
T ss_pred hccCCccHHHHHHHHHHcCCHHHHH
Confidence 4799999999999999999998874
No 45
>4glx_A DNA ligase; inhibitor, ligase-ligase inhibitor-DNA complex; HET: DNA 0XS; 1.90A {Escherichia coli}
Probab=55.11 E-value=7.7 Score=40.14 Aligned_cols=14 Identities=29% Similarity=0.299 Sum_probs=9.7
Q ss_pred HHHHHHHhcCCCEE
Q 017910 89 DCKRLLKLMGVPVV 102 (364)
Q Consensus 89 ~ik~lL~~~GIp~i 102 (364)
+..+.|+.+|+|+.
T Consensus 241 e~l~~L~~~Gf~v~ 254 (586)
T 4glx_A 241 GRLLQFKKWGLPVS 254 (586)
T ss_dssp HHHHHHHHTTCCCC
T ss_pred HHHHHHHHcCCCCc
Confidence 34567788888764
No 46
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=48.29 E-value=8.7 Score=34.54 Aligned_cols=34 Identities=15% Similarity=0.296 Sum_probs=23.3
Q ss_pred CHHHHHHHHHHhCCCCC--CCCCCccHHHHHHHHHHcC
Q 017910 168 TMDQFIDLCILSGCDYC--DSIRGIGGQTALKLIRQHG 203 (364)
Q Consensus 168 ~~~qfidl~iL~G~Dy~--d~IpGIG~ktA~kLik~~g 203 (364)
+++.|. -+++.+ |.. ..|||||+|||.+++.++.
T Consensus 109 ~~~~l~-~aI~~~-d~~~L~~vpGIG~KtA~rIi~elk 144 (212)
T 2ztd_A 109 DAPALR-QVLADG-NVAALTRVPGIGKRGAERMVLELR 144 (212)
T ss_dssp CHHHHH-HHHHTT-CHHHHHTSTTCCHHHHHHHHHHHT
T ss_pred CHHHHH-HHHHhC-CHHHHhhCCCCCHHHHHHHHHHHH
Confidence 344442 234455 554 3689999999999998865
No 47
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=47.74 E-value=13 Score=24.35 Aligned_cols=26 Identities=23% Similarity=0.431 Sum_probs=19.7
Q ss_pred CCCHHHHHHHHHHhcCCChHHHHHHHHH
Q 017910 250 APDEEGLINFLVSENGFNSDRVTKAIEK 277 (364)
Q Consensus 250 ~pd~e~L~~fl~~e~~f~~~rv~~~l~~ 277 (364)
.|+.+.+..++ ++||+++++..++..
T Consensus 2 ~p~e~~i~~L~--~MGF~~~~a~~AL~~ 27 (43)
T 2g3q_A 2 TPKSLAVEELS--GMGFTEEEAHNALEK 27 (43)
T ss_dssp CHHHHHHHHHH--TTTSCHHHHHHHHHH
T ss_pred CCCHHHHHHHH--HcCCCHHHHHHHHHH
Confidence 35666776665 899999998888764
No 48
>3b0x_A DNA polymerase beta family (X family); structural genomics, riken structural genomics/proteomics in RSGI, polxc, PHP, DRP lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB: 3au2_A* 3au6_A* 3auo_A* 3b0y_A*
Probab=47.29 E-value=14 Score=37.72 Aligned_cols=39 Identities=18% Similarity=0.420 Sum_probs=27.7
Q ss_pred HHHHHcCC-CHHHHHHHHHHhCCCCCCCCCCccHHHHHHHHHH
Q 017910 160 KILEELNL-TMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQ 201 (364)
Q Consensus 160 ~v~e~lgl-~~~qfidl~iL~G~Dy~d~IpGIG~ktA~kLik~ 201 (364)
.+++.+|+ +++++.. ++..| | ...+||||+|||.+++..
T Consensus 108 ~~~~~lg~~~~~~l~~-a~~~~-~-l~~~~GiG~k~a~~i~~~ 147 (575)
T 3b0x_A 108 LLYEGLGIDSLEKLKA-ALDRG-D-LTRLKGFGPKRAERIREG 147 (575)
T ss_dssp HHHHTSCCCSHHHHHH-HHHHT-G-GGGSTTCCHHHHHHHHHH
T ss_pred HHHHhcCCCCHHHHHH-HHHcC-C-cccCCCCCccHHHHHHHH
Confidence 34555665 7787765 44456 6 447899999999999655
No 49
>3vdp_A Recombination protein RECR; zinc finger, DNA repair, DNA binding; 2.45A {Thermoanaerobacter tengcongensis} PDB: 3vdu_A 3ve5_D
Probab=43.69 E-value=9.5 Score=34.32 Aligned_cols=15 Identities=40% Similarity=0.558 Sum_probs=13.0
Q ss_pred CCCCccHHHHHHHHH
Q 017910 186 SIRGIGGQTALKLIR 200 (364)
Q Consensus 186 ~IpGIG~ktA~kLik 200 (364)
.+||||+|+|.+|.-
T Consensus 30 ~LPGIG~KsA~RlA~ 44 (212)
T 3vdp_A 30 KLPGIGPKTAQRLAF 44 (212)
T ss_dssp TSTTCCHHHHHHHHH
T ss_pred HCCCCCHHHHHHHHH
Confidence 689999999998864
No 50
>2edu_A Kinesin-like protein KIF22; kinesin-like DNA binding domain, helix turn helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.60.2.7
Probab=40.29 E-value=14 Score=28.61 Aligned_cols=17 Identities=24% Similarity=0.347 Sum_probs=15.1
Q ss_pred CCCCccHHHHHHHHHHc
Q 017910 186 SIRGIGGQTALKLIRQH 202 (364)
Q Consensus 186 ~IpGIG~ktA~kLik~~ 202 (364)
.|||||+++|.+++..+
T Consensus 44 ~ipGIG~~~A~~Il~~r 60 (98)
T 2edu_A 44 SLQRIGPKKAQLIVGWR 60 (98)
T ss_dssp HSTTCCHHHHHHHHHHH
T ss_pred HCCCCCHHHHHHHHHHH
Confidence 58999999999999865
No 51
>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2
Probab=39.65 E-value=14 Score=32.46 Aligned_cols=19 Identities=21% Similarity=0.309 Sum_probs=16.4
Q ss_pred CCCCCccHHHHHHHHHHcC
Q 017910 185 DSIRGIGGQTALKLIRQHG 203 (364)
Q Consensus 185 d~IpGIG~ktA~kLik~~g 203 (364)
..+||||+|+|.+++.++.
T Consensus 110 ~~vpGIG~K~A~rI~~~lk 128 (191)
T 1ixr_A 110 TSASGVGRRLAERIALELK 128 (191)
T ss_dssp TTSTTCCHHHHHHHHHHHT
T ss_pred HhCCCCCHHHHHHHHHHHH
Confidence 3689999999999988764
No 52
>1vdd_A Recombination protein RECR; helix-hairpin-helix, zinc finger, toprim, walker B ATP binding motif; 2.50A {Deinococcus radiodurans} SCOP: e.49.1.1 PDB: 2v1c_A
Probab=38.36 E-value=13 Score=33.81 Aligned_cols=16 Identities=31% Similarity=0.522 Sum_probs=13.3
Q ss_pred CCCCccHHHHHHHHHH
Q 017910 186 SIRGIGGQTALKLIRQ 201 (364)
Q Consensus 186 ~IpGIG~ktA~kLik~ 201 (364)
.+||||+|+|..|.-.
T Consensus 16 ~LPGIG~KSA~RlA~h 31 (228)
T 1vdd_A 16 RLPGIGPKSAQRLAFH 31 (228)
T ss_dssp TSTTCCHHHHHHHHHH
T ss_pred HCCCCCHHHHHHHHHH
Confidence 5799999999988643
No 53
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=38.15 E-value=35 Score=24.20 Aligned_cols=26 Identities=27% Similarity=0.538 Sum_probs=21.3
Q ss_pred CCCHHHHHHHHHHhcCCChHHHHHHHHH
Q 017910 250 APDEEGLINFLVSENGFNSDRVTKAIEK 277 (364)
Q Consensus 250 ~pd~e~L~~fl~~e~~f~~~rv~~~l~~ 277 (364)
.+|.+.+.+++ ++||+++++.++|+.
T Consensus 7 ~~~~~~v~~L~--~MGF~~~~a~~AL~~ 32 (63)
T 2dak_A 7 GPPEDCVTTIV--SMGFSRDQALKALRA 32 (63)
T ss_dssp CCCHHHHHHHH--HHTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHH--HcCCCHHHHHHHHHH
Confidence 57888888876 799999999888764
No 54
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=37.23 E-value=27 Score=23.20 Aligned_cols=26 Identities=15% Similarity=0.418 Sum_probs=20.9
Q ss_pred CCCHHHHHHHHHHhcCCChHHHHHHHHH
Q 017910 250 APDEEGLINFLVSENGFNSDRVTKAIEK 277 (364)
Q Consensus 250 ~pd~e~L~~fl~~e~~f~~~rv~~~l~~ 277 (364)
.+|.+.+.+++ ++||+++++..+|..
T Consensus 7 ~~~~~~v~~L~--~MGF~~~~a~~AL~~ 32 (47)
T 2ekk_A 7 GVNQQQLQQLM--DMGFTREHAMEALLN 32 (47)
T ss_dssp SSCHHHHHHHH--HHHCCHHHHHHHHHH
T ss_pred CCCHHHHHHHH--HcCCCHHHHHHHHHH
Confidence 46788888876 799999998888754
No 55
>3umv_A Deoxyribodipyrimidine photo-lyase; CPD cyclobutane pyrimidine dimers, UV damaged DNA, DNA repai flavoprotein; HET: FAD; 1.71A {Oryza sativa japonica group}
Probab=37.22 E-value=47 Score=33.44 Aligned_cols=31 Identities=10% Similarity=-0.055 Sum_probs=18.1
Q ss_pred HHHHHHHHHhcCCCEEeccCcHHHHHHHHHHc
Q 017910 87 NDDCKRLLKLMGVPVVEAPSEAEAQCAALCKS 118 (364)
Q Consensus 87 ~~~ik~lL~~~GIp~i~APgEADaq~A~L~~~ 118 (364)
+.++.+-|+.+|++.++.-|++.++ ..|+++
T Consensus 97 L~dL~~~L~~lG~~L~v~~G~p~~v-~~L~~~ 127 (506)
T 3umv_A 97 LRRLAADAAARHLPFFLFTGGPAEI-PALVQR 127 (506)
T ss_dssp HHHHHHHHHHTTCCEEEESSCTTHH-HHHHHH
T ss_pred HHHHHHHHHHcCCceEEEecChHHH-HHHHHh
Confidence 4455555666666666666655555 555553
No 56
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=32.95 E-value=19 Score=31.90 Aligned_cols=17 Identities=41% Similarity=0.604 Sum_probs=15.0
Q ss_pred CCCCccHHHHHHHHHHc
Q 017910 186 SIRGIGGQTALKLIRQH 202 (364)
Q Consensus 186 ~IpGIG~ktA~kLik~~ 202 (364)
.+||||+|+|.+++.++
T Consensus 112 ~vpGIG~K~A~rI~~el 128 (203)
T 1cuk_A 112 KLPGIGKKTAERLIVEM 128 (203)
T ss_dssp TSTTCCHHHHHHHHHHH
T ss_pred hCCCCCHHHHHHHHHHH
Confidence 68999999999998764
No 57
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=32.48 E-value=43 Score=24.75 Aligned_cols=27 Identities=33% Similarity=0.428 Sum_probs=21.6
Q ss_pred CCCHHHHHHHHHHhcCCChHHHHHHHHHH
Q 017910 250 APDEEGLINFLVSENGFNSDRVTKAIEKI 278 (364)
Q Consensus 250 ~pd~e~L~~fl~~e~~f~~~rv~~~l~~l 278 (364)
.+|.+.|.+++ ++||++++++++|..-
T Consensus 7 ~~~e~~v~~L~--~MGF~~~~a~~AL~~t 33 (74)
T 2dag_A 7 GLDESVIIQLV--EMGFPMDACRKAVYYT 33 (74)
T ss_dssp SSCHHHHHHHH--HHSCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHH--HcCCCHHHHHHHHHHh
Confidence 36888887776 7999999999888643
No 58
>3fhg_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase, hydrolase; 1.90A {Sulfolobus solfataricus}
Probab=32.11 E-value=19 Score=31.74 Aligned_cols=16 Identities=44% Similarity=0.729 Sum_probs=13.4
Q ss_pred CCCCccHHHHHHHHHH
Q 017910 186 SIRGIGGQTALKLIRQ 201 (364)
Q Consensus 186 ~IpGIG~ktA~kLik~ 201 (364)
.+||||++||--++.-
T Consensus 121 ~lpGIG~kTA~~il~~ 136 (207)
T 3fhg_A 121 NIKGIGMQEASHFLRN 136 (207)
T ss_dssp TSTTCCHHHHHHHHHH
T ss_pred cCCCcCHHHHHHHHHH
Confidence 5899999999887754
No 59
>2xry_A Deoxyribodipyrimidine photolyase; DNA damage, DNA repair; HET: FAD; 1.50A {Methanosarcina mazei} PDB: 2xrz_A*
Probab=31.43 E-value=77 Score=31.36 Aligned_cols=32 Identities=9% Similarity=0.092 Sum_probs=20.0
Q ss_pred HHHHHHHHHhcCCCEEeccCcHHHHHHHHHHc
Q 017910 87 NDDCKRLLKLMGVPVVEAPSEAEAQCAALCKS 118 (364)
Q Consensus 87 ~~~ik~lL~~~GIp~i~APgEADaq~A~L~~~ 118 (364)
+..+.+-|+..|+++++.-|++.+.+..|+++
T Consensus 94 L~~L~~~L~~~G~~L~v~~g~~~~~l~~l~~~ 125 (482)
T 2xry_A 94 LQELEVSLSRKKIPSFFLRGDPGEKISRFVKD 125 (482)
T ss_dssp HHHHHHHHHHTTCCEEEEESCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCcEEEEeCCHHHHHHHHHHH
Confidence 44555566666666666666666666666653
No 60
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=31.19 E-value=53 Score=23.48 Aligned_cols=26 Identities=27% Similarity=0.432 Sum_probs=20.4
Q ss_pred CCCHHHHHHHHHHhcCCChHHHHHHHHH
Q 017910 250 APDEEGLINFLVSENGFNSDRVTKAIEK 277 (364)
Q Consensus 250 ~pd~e~L~~fl~~e~~f~~~rv~~~l~~ 277 (364)
.+|.+.|..++ ++||+++++..+|+.
T Consensus 7 ~~~~~~I~~L~--~MGF~~~~a~~AL~~ 32 (63)
T 1wji_A 7 GVDEKALKHIT--EMGFSKEASRQALMD 32 (63)
T ss_dssp SSCHHHHHHHH--TTTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHH--HcCCCHHHHHHHHHH
Confidence 36777777775 899999998888754
No 61
>2k6x_A Sigma-A, RNA polymerase sigma factor RPOD; DNA-binding, transcription, transcription regulation; NMR {Thermotoga maritima}
Probab=31.11 E-value=67 Score=23.27 Aligned_cols=43 Identities=21% Similarity=0.241 Sum_probs=28.8
Q ss_pred HHHHcC--CHHHHHHHhccccc-cchhhHHHHHHHHHhcCCCEEec
Q 017910 62 EAVEAG--NKEDIEKFSKRTVK-VTKQHNDDCKRLLKLMGVPVVEA 104 (364)
Q Consensus 62 ~a~~~g--~~~~~~k~~~r~~~-vt~~~~~~ik~lL~~~GIp~i~A 104 (364)
.+++.| +.+++..+...... ++.++++.+...|..+||.++..
T Consensus 17 ~gK~~G~lTy~EI~d~l~~~~~~ld~e~id~i~~~L~~~gI~Vvd~ 62 (72)
T 2k6x_A 17 LGKKKGYITYEDIDKAFPPDFEGFDTNLIERIHEELEKHGINIVEN 62 (72)
T ss_dssp HHHHHSSCBHHHHHHHCSCSCSSCCHHHHHHHHHHHHHTCCCCBCC
T ss_pred HHhHcCCccHHHHHHhCccccccCCHHHHHHHHHHHHHCCCccccC
Confidence 344455 44555554433222 67889999999999999998754
No 62
>2zix_A Crossover junction endonuclease MUS81; helix-hairpin-helix, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium, metal-binding, nucleus; 3.50A {Homo sapiens}
Probab=30.13 E-value=5.4 Score=37.49 Aligned_cols=29 Identities=21% Similarity=0.479 Sum_probs=26.9
Q ss_pred CCCCccHHHHHHHHHHcCCHHHHHHHHHh
Q 017910 186 SIRGIGGQTALKLIRQHGSIETILENINR 214 (364)
Q Consensus 186 ~IpGIG~ktA~kLik~~gsle~il~~l~~ 214 (364)
.|||||+++|..+++.|+++..+++..+.
T Consensus 237 ~I~GVs~~~A~~I~~~ypTp~~L~~Ay~~ 265 (307)
T 2zix_A 237 QVRGVSGEKAAALVDRYSTPASLLAAYDA 265 (307)
T ss_dssp CSTTCCSTTTTTSSSSSCSHHHHHHHHHC
T ss_pred hccCCCHHHHHHHHHHcCCHHHHHHHHHh
Confidence 58999999999999999999999998874
No 63
>4glx_A DNA ligase; inhibitor, ligase-ligase inhibitor-DNA complex; HET: DNA 0XS; 1.90A {Escherichia coli}
Probab=29.90 E-value=32 Score=35.48 Aligned_cols=26 Identities=31% Similarity=0.405 Sum_probs=23.5
Q ss_pred CCCCCccHHHHHHHHHHcCCHHHHHH
Q 017910 185 DSIRGIGGQTALKLIRQHGSIETILE 210 (364)
Q Consensus 185 d~IpGIG~ktA~kLik~~gsle~il~ 210 (364)
-|||+||..+|..|.+.|+|++.+.+
T Consensus 515 LGI~~vG~~~a~~La~~f~sl~~l~~ 540 (586)
T 4glx_A 515 LGIREVGEATAAGLAAYFGTLEALEA 540 (586)
T ss_dssp TTCTTCCHHHHHHHHHHHCSHHHHHH
T ss_pred cCCCchhHHHHHHHHHHcCCHHHHHc
Confidence 47999999999999999999998865
No 64
>1rvv_A Riboflavin synthase; transferase, flavoprotein; HET: INI; 2.40A {Bacillus subtilis} SCOP: c.16.1.1 PDB: 1zis_A* 1vsw_A 1vsx_A 3jv8_A
Probab=29.53 E-value=68 Score=27.19 Aligned_cols=44 Identities=18% Similarity=0.190 Sum_probs=34.3
Q ss_pred cchhhHHHHHHHHHhcCCC-----EEeccC--cHHHHHHHHHHcCCeEEEe
Q 017910 82 VTKQHNDDCKRLLKLMGVP-----VVEAPS--EAEAQCAALCKSGQVYAVA 125 (364)
Q Consensus 82 vt~~~~~~ik~lL~~~GIp-----~i~APg--EADaq~A~L~~~g~v~~Vi 125 (364)
|+..+.+-+.+.|+..|+. ++..|| |-=-.+..|++.+..|+|+
T Consensus 26 I~~~Ll~ga~~~l~~~gv~~~~i~v~~VPGafEiP~aa~~la~~~~yDavI 76 (154)
T 1rvv_A 26 ITSKLLSGAEDALLRHGVDTNDIDVAWVPGAFEIPFAAKKMAETKKYDAII 76 (154)
T ss_dssp HHHHHHHHHHHHHHHTTCCGGGEEEEEESSGGGHHHHHHHHHHTSCCSEEE
T ss_pred HHHHHHHHHHHHHHHcCCCccceEEEECCcHHHHHHHHHHHHhcCCCCEEE
Confidence 4467788888999999864 778999 8777788888887666665
No 65
>1pu6_A 3-methyladenine DNA glycosylase; helix-hairpin-helix, base excision repair, hydrolase; HET: KCX; 1.64A {Helicobacter pylori} SCOP: a.96.1.5 PDB: 1pu7_A* 1pu8_A*
Probab=28.91 E-value=23 Score=31.47 Aligned_cols=16 Identities=25% Similarity=0.424 Sum_probs=13.2
Q ss_pred CCCCccHHHHHHHHHH
Q 017910 186 SIRGIGGQTALKLIRQ 201 (364)
Q Consensus 186 ~IpGIG~ktA~kLik~ 201 (364)
.+||||++||--++..
T Consensus 125 ~lpGIG~kTA~~il~~ 140 (218)
T 1pu6_A 125 DQKGIGKESADAILCY 140 (218)
T ss_dssp TSTTCCHHHHHHHHHH
T ss_pred cCCCcCHHHHHHHHHH
Confidence 5799999999877754
No 66
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=28.75 E-value=73 Score=19.84 Aligned_cols=26 Identities=27% Similarity=0.423 Sum_probs=17.1
Q ss_pred CCHHHHHHHHHHhcCCChHHHHHHHHH
Q 017910 251 PDEEGLINFLVSENGFNSDRVTKAIEK 277 (364)
Q Consensus 251 pd~e~L~~fl~~e~~f~~~rv~~~l~~ 277 (364)
|+.+..++-|+ ++||++++...++..
T Consensus 2 ~~~~~~i~~L~-~mGf~~~~a~~AL~~ 27 (40)
T 1z96_A 2 PGLNSKIAQLV-SMGFDPLEAAQALDA 27 (40)
T ss_dssp -CHHHHHHHHH-HTTCCHHHHHHHHHH
T ss_pred chHHHHHHHHH-HcCCCHHHHHHHHHH
Confidence 45555555553 679999988877754
No 67
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=28.51 E-value=56 Score=24.86 Aligned_cols=27 Identities=19% Similarity=0.390 Sum_probs=21.6
Q ss_pred CCCCHHHHHHHHHHhcCCChHHHHHHHHH
Q 017910 249 SAPDEEGLINFLVSENGFNSDRVTKAIEK 277 (364)
Q Consensus 249 ~~pd~e~L~~fl~~e~~f~~~rv~~~l~~ 277 (364)
..|+.+.+..++ ++||++++++.+|+.
T Consensus 26 ~~~~ee~I~~Lv--~MGF~~~~A~~AL~~ 52 (83)
T 1veg_A 26 ASPSQESINQLV--YMGFDTVVAEAALRV 52 (83)
T ss_dssp CCCCHHHHHHHH--HHSCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHH--HcCCCHHHHHHHHHH
Confidence 456778887776 899999999988864
No 68
>3r8n_M 30S ribosomal protein S13; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_M* 3j18_M 3oaq_M 3ofa_M 3ofx_M 3ofo_M 3r8o_M 4a2i_M 4gd1_M 4gd2_M 3i1m_M 1vs7_M* 3e1a_F 3e1c_F 1vs5_M 3i1o_M 3i1q_M 3i1s_M 3i1z_M 3i21_M ...
Probab=28.41 E-value=41 Score=27.15 Aligned_cols=17 Identities=24% Similarity=0.518 Sum_probs=15.4
Q ss_pred CCCccHHHHHHHHHHcC
Q 017910 187 IRGIGGQTALKLIRQHG 203 (364)
Q Consensus 187 IpGIG~ktA~kLik~~g 203 (364)
|.|||..+|..++++.+
T Consensus 21 I~GIG~~~A~~I~~~~g 37 (114)
T 3r8n_M 21 IYGVGKTRSKAILAAAG 37 (114)
T ss_dssp STTCCHHHHHHHHHHTT
T ss_pred hcCcCHHHHHHHHHHcC
Confidence 68999999999999876
No 69
>3fhf_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase; 2.00A {Methanocaldococcus jannaschii} PDB: 3knt_A*
Probab=28.38 E-value=28 Score=31.13 Aligned_cols=16 Identities=38% Similarity=0.694 Sum_probs=13.0
Q ss_pred CCCCccHHHHHHHHHH
Q 017910 186 SIRGIGGQTALKLIRQ 201 (364)
Q Consensus 186 ~IpGIG~ktA~kLik~ 201 (364)
++||||+|||--++..
T Consensus 129 ~LpGVG~KTA~~vL~~ 144 (214)
T 3fhf_A 129 NIKGIGYKEASHFLRN 144 (214)
T ss_dssp HSTTCCHHHHHHHHHH
T ss_pred hCCCCCHHHHHHHHHH
Confidence 5799999999776654
No 70
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=28.32 E-value=59 Score=23.89 Aligned_cols=27 Identities=30% Similarity=0.411 Sum_probs=21.9
Q ss_pred CCCCHHHHHHHHHHhcCCChHHHHHHHHH
Q 017910 249 SAPDEEGLINFLVSENGFNSDRVTKAIEK 277 (364)
Q Consensus 249 ~~pd~e~L~~fl~~e~~f~~~rv~~~l~~ 277 (364)
..++.+.+..++ ++||++++++.+|+.
T Consensus 26 ~~~~~~~v~~L~--~MGF~~~~a~~AL~~ 52 (73)
T 1wiv_A 26 SDIDQSSVDTLL--SFGFAEDVARKALKA 52 (73)
T ss_dssp CSSCHHHHHHHH--HHTCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHH--HcCCCHHHHHHHHHH
Confidence 357888887776 899999999888764
No 71
>1hqk_A 6,7-dimethyl-8-ribityllumazine synthase; analysi stability, vitamin biosynthesis, transferase; 1.60A {Aquifex aeolicus} SCOP: c.16.1.1 PDB: 1nqu_A* 1nqv_A* 1nqw_A* 1nqx_A*
Probab=28.09 E-value=71 Score=27.08 Aligned_cols=44 Identities=16% Similarity=0.219 Sum_probs=34.2
Q ss_pred cchhhHHHHHHHHHhcCCC-----EEeccC--cHHHHHHHHHHcCCeEEEe
Q 017910 82 VTKQHNDDCKRLLKLMGVP-----VVEAPS--EAEAQCAALCKSGQVYAVA 125 (364)
Q Consensus 82 vt~~~~~~ik~lL~~~GIp-----~i~APg--EADaq~A~L~~~g~v~~Vi 125 (364)
|+..+.+-+.+.|+..|+. ++..|| |-=-.+..|++.+..|+|+
T Consensus 26 I~~~Ll~ga~~~l~~~gv~~~~i~v~~VPGafEiP~aa~~la~~~~yDavI 76 (154)
T 1hqk_A 26 LVDRLVEGAIDCIVRHGGREEDITLVRVPGSWEIPVAAGELARKEDIDAVI 76 (154)
T ss_dssp HHHHHHHHHHHHHHHTTCCGGGEEEEEESSGGGHHHHHHHHHTCTTCCEEE
T ss_pred HHHHHHHHHHHHHHHcCCCccceEEEECCcHHHHHHHHHHHHhcCCCCEEE
Confidence 4467788888999999864 778999 8777778888887666665
No 72
>3nq4_A 6,7-dimethyl-8-ribityllumazine synthase; 30MER, icosahedral, flavodoxin like fold, transferase, DMRL riboflavin biosynthesis, drug targe; 3.50A {Salmonella typhimurium} PDB: 3mk3_A
Probab=27.93 E-value=52 Score=28.01 Aligned_cols=44 Identities=34% Similarity=0.373 Sum_probs=34.4
Q ss_pred cchhhHHHHHHHHHhcC-C-----CEEeccC--cHHHHHHHHHHcCCeEEEe
Q 017910 82 VTKQHNDDCKRLLKLMG-V-----PVVEAPS--EAEAQCAALCKSGQVYAVA 125 (364)
Q Consensus 82 vt~~~~~~ik~lL~~~G-I-----p~i~APg--EADaq~A~L~~~g~v~~Vi 125 (364)
|+..+++-+.+.|+..| + .++..|| |-=-.+..|++.|..|+|+
T Consensus 26 I~~~Ll~gA~~~l~~~G~v~~~~i~v~~VPGafEiP~aa~~la~~~~yDavI 77 (156)
T 3nq4_A 26 INDSLLDGAVDALTRIGQVKDDNITVVWVPGAYELPLATEALAKSGKYDAVV 77 (156)
T ss_dssp HHHHHHHHHHHHHHHTTCCCTTSEEEEEESSTTTHHHHHHHHHHHCSCSEEE
T ss_pred HHHHHHHHHHHHHHHcCCCcccceEEEEcCcHHHHHHHHHHHHhcCCCCEEE
Confidence 44677888899999998 4 6788998 8778888888887666655
No 73
>3n0u_A Probable N-glycosylase/DNA lyase; structural genomics, ISFI, DNA repair, 8-oxoguanine, base EX repair, PSI-2, protein structure initiative; 1.50A {Thermotoga maritima}
Probab=27.67 E-value=24 Score=31.62 Aligned_cols=18 Identities=33% Similarity=0.645 Sum_probs=13.9
Q ss_pred CCCCccHHHHHHHHHHcC
Q 017910 186 SIRGIGGQTALKLIRQHG 203 (364)
Q Consensus 186 ~IpGIG~ktA~kLik~~g 203 (364)
.+||||+|||--++.-++
T Consensus 134 ~l~GVG~kTA~~vL~~~g 151 (219)
T 3n0u_A 134 NAKGIGWKEASHFLRNTG 151 (219)
T ss_dssp HSTTCCHHHHHHHHHTTT
T ss_pred hCCCCCHHHHHHHHHHcC
Confidence 579999999977765444
No 74
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=27.61 E-value=35 Score=23.04 Aligned_cols=25 Identities=24% Similarity=0.412 Sum_probs=17.9
Q ss_pred CCHHHHHHHHHHhcCCChHHHHHHHHH
Q 017910 251 PDEEGLINFLVSENGFNSDRVTKAIEK 277 (364)
Q Consensus 251 pd~e~L~~fl~~e~~f~~~rv~~~l~~ 277 (364)
++.+.+..++ ++||+++++..+|+.
T Consensus 7 ~~~~~i~~L~--~MGF~~~~a~~AL~~ 31 (49)
T 1ify_A 7 EYETMLTEIM--SMGYERERVVAALRA 31 (49)
T ss_dssp HHHHHHHHHH--HTTCCHHHHHHHHHT
T ss_pred cCHHHHHHHH--HcCCCHHHHHHHHHH
Confidence 3445565554 899999999888753
No 75
>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A
Probab=27.52 E-value=83 Score=28.31 Aligned_cols=107 Identities=13% Similarity=0.233 Sum_probs=53.4
Q ss_pred HHHHHcCCCHHHHHHHH----HHhCCCCCCCC---------CCccHHHHHHHHHHcC-----CHHHHHHHHHhccCCCCC
Q 017910 160 KILEELNLTMDQFIDLC----ILSGCDYCDSI---------RGIGGQTALKLIRQHG-----SIETILENINRERYQIPE 221 (364)
Q Consensus 160 ~v~e~lgl~~~qfidl~----iL~G~Dy~d~I---------pGIG~ktA~kLik~~g-----sle~il~~l~~~k~~i~e 221 (364)
.++..+|++++++..+. .++++|... + -|+......+++.+++ +++++..+++-.... -
T Consensus 46 ~fL~~lG~~~~~i~~il~~~P~lL~~~~e~-l~p~v~~L~~~Gls~~~i~~~l~~~P~lL~~s~~~l~~~v~~L~~~--l 122 (270)
T 3m66_A 46 LFLKDVGIEDNQLGAFLTKNHAIFSEDLEN-LKTRVAYLHSKNFSKADVAQMVRKAPFLLNFSVERLDNRLGFFQKE--L 122 (270)
T ss_dssp HHHHHHTCCGGGHHHHHHHCTTGGGSCHHH-HHHHHHHHHHTTCCHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHH--H
T ss_pred HHHHHcCCCHHHHHHHHHhCChhhhCCHHH-HHHHHHHHHHcCCCHHHHHHHHHhCCHHHcCCHHHHHHHHHHHHHH--h
Confidence 34566777777766654 233433332 2 1566677777777776 345544444322100 0
Q ss_pred CcchHHHHHHh-CCCCcCCccccccCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHH
Q 017910 222 DWPYQEARRLF-KEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEK 277 (364)
Q Consensus 222 ~~~~~~~~~lf-~~p~V~~~~~~~~l~~~~pd~e~L~~fl~~e~~f~~~rv~~~l~~ 277 (364)
.++..+...++ .+|.+-. ...+ ....-.+|+.+++||+.+.|...+.+
T Consensus 123 G~~~~~i~~ll~~~P~il~-~s~e-------~~~~~v~~l~~~~G~s~~ei~~~v~~ 171 (270)
T 3m66_A 123 ELSVKKTRDLVVRLPRLLT-GSLE-------PVKENMKVYRLELGFKHNEIQHMITR 171 (270)
T ss_dssp CCCHHHHHHHHHHSGGGGT-SCSH-------HHHHHHHHHHHTSCCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhCCccee-echH-------HHHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 22333444443 4554421 1110 12333454446888888877766544
No 76
>2qip_A Protein of unknown function VPA0982; APC85975, vibrio parahaemolyticus RIMD 2210633, STR genomics, PSI-2, protein structure initiative; 1.48A {Vibrio parahaemolyticus}
Probab=27.39 E-value=86 Score=26.14 Aligned_cols=49 Identities=14% Similarity=0.153 Sum_probs=31.8
Q ss_pred HHHHHHHHHhcCCCEEecc----------CcHHHHHHH----HHHcCCeEEEecCCCcccccc
Q 017910 87 NDDCKRLLKLMGVPVVEAP----------SEAEAQCAA----LCKSGQVYAVASEDMDSLTFG 135 (364)
Q Consensus 87 ~~~ik~lL~~~GIp~i~AP----------gEADaq~A~----L~~~g~v~~ViS~DsD~l~fg 135 (364)
....++.|...|+.++.-| ..+|-.+|. ++..--..+++|+|+|+..+.
T Consensus 63 ~~~~~~~L~~~g~~v~~~p~~~~~~~~~k~~~Dv~laiD~~~~a~~~d~~vLvSgD~DF~plv 125 (165)
T 2qip_A 63 QRQFHHILRGVGFEVMLKPYIQRRDGSAKGDWDVGITLDAIEIAPDVDRVILVSGDGDFSLLV 125 (165)
T ss_dssp HHHHHHHHHHHTCEEEECCCCCCSSCCCSCCCHHHHHHHHHHHGGGCSEEEEECCCGGGHHHH
T ss_pred HHHHHHHHHHCCcEEEEEeeeeccCCccCCCccHHHHHHHHHhhccCCEEEEEECChhHHHHH
Confidence 3456778888999766444 355544432 233334667899999998764
No 77
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=27.09 E-value=30 Score=24.91 Aligned_cols=27 Identities=26% Similarity=0.271 Sum_probs=20.4
Q ss_pred CCCCHHHHHHHHHHhcCCChHHHHHHHHH
Q 017910 249 SAPDEEGLINFLVSENGFNSDRVTKAIEK 277 (364)
Q Consensus 249 ~~pd~e~L~~fl~~e~~f~~~rv~~~l~~ 277 (364)
..||.+.+.+++ ++||+++++.++|..
T Consensus 6 ~~~~e~~v~~L~--~MGF~~~~a~~AL~~ 32 (64)
T 2crn_A 6 SGSSPSLLEPLL--AMGFPVHTALKALAA 32 (64)
T ss_dssp CCCSCSSHHHHH--HTSCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHH--HcCCCHHHHHHHHHH
Confidence 346666676665 799999999988864
No 78
>1kz1_A 6,7-dimethyl-8-ribityllumazine synthase; riboflavin biosynthesis, ligand binding, transferase; 2.00A {Schizosaccharomyces pombe} SCOP: c.16.1.1 PDB: 2a59_A* 2a58_A* 2a57_A* 1kyv_A* 1kyx_A* 1kyy_A* 1kz9_A 1kz4_A 1kz6_A
Probab=26.72 E-value=76 Score=27.07 Aligned_cols=44 Identities=14% Similarity=0.025 Sum_probs=33.5
Q ss_pred cchhhHHHHHHHHHh-cCCC-----EEeccC--cHHHHHHHHHHcCCeEEEe
Q 017910 82 VTKQHNDDCKRLLKL-MGVP-----VVEAPS--EAEAQCAALCKSGQVYAVA 125 (364)
Q Consensus 82 vt~~~~~~ik~lL~~-~GIp-----~i~APg--EADaq~A~L~~~g~v~~Vi 125 (364)
|+..+++-+.+.|+. .|+. ++..|| |-=-.+..|++.+..|+|+
T Consensus 31 I~~~Ll~ga~~~l~~~~Gv~~~~i~v~~VPGafEiP~aa~~la~~~~yDavI 82 (159)
T 1kz1_A 31 AIEPLVKGAVETMIEKHDVKLENIDIESVPGSWELPQGIRASIARNTYDAVI 82 (159)
T ss_dssp HHHHHHHHHHHHHHHHHCCCGGGEEEEECSSGGGHHHHHHHHHHHSCCSEEE
T ss_pred HHHHHHHHHHHHHHHHcCCCccceEEEECCcHHHHHHHHHHHHhcCCCCEEE
Confidence 446677888888888 8864 888999 8777788888877666655
No 79
>1kea_A Possible G-T mismatches repair enzyme; DNA repair, DNA glycosylase, DNA mismatch, methylation; 2.00A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.96.1.2
Probab=26.51 E-value=27 Score=31.02 Aligned_cols=16 Identities=19% Similarity=0.372 Sum_probs=13.0
Q ss_pred CCCCccHHHHHHHHHH
Q 017910 186 SIRGIGGQTALKLIRQ 201 (364)
Q Consensus 186 ~IpGIG~ktA~kLik~ 201 (364)
.|||||++||--++..
T Consensus 119 ~lpGIG~~TA~~il~~ 134 (221)
T 1kea_A 119 DLPGVGKYTCAAVMCL 134 (221)
T ss_dssp TSTTCCHHHHHHHHHH
T ss_pred hCCCCcHHHHHHHHHH
Confidence 3799999999877654
No 80
>3iz6_M 40S ribosomal protein S18 (S13P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=26.40 E-value=11 Score=32.24 Aligned_cols=17 Identities=18% Similarity=0.423 Sum_probs=15.4
Q ss_pred CCCccHHHHHHHHHHcC
Q 017910 187 IRGIGGQTALKLIRQHG 203 (364)
Q Consensus 187 IpGIG~ktA~kLik~~g 203 (364)
|.|||..+|..++++.+
T Consensus 33 I~GIG~~~A~~I~~~~g 49 (152)
T 3iz6_M 33 IKGVGRRFSNIVCKKAD 49 (152)
T ss_dssp STTCCHHHHHHHHHHHT
T ss_pred ccCcCHHHHHHHHHHcC
Confidence 68999999999999875
No 81
>1di0_A Lumazine synthase; transferase; 2.70A {Brucella abortus} SCOP: c.16.1.1 PDB: 1t13_A* 1xn1_A
Probab=26.33 E-value=44 Score=28.47 Aligned_cols=44 Identities=14% Similarity=0.245 Sum_probs=34.6
Q ss_pred cchhhHHHHHHHHHhcCC-----CEEeccC--cHHHHHHHHHHcCCeEEEe
Q 017910 82 VTKQHNDDCKRLLKLMGV-----PVVEAPS--EAEAQCAALCKSGQVYAVA 125 (364)
Q Consensus 82 vt~~~~~~ik~lL~~~GI-----p~i~APg--EADaq~A~L~~~g~v~~Vi 125 (364)
|+..+.+-+.+.|+..|+ .++..|| |-=-.+..|++.+..|+|+
T Consensus 24 I~~~Ll~gA~~~l~~~gv~~~~i~v~~VPGafEiP~aa~~la~~~~yDavI 74 (158)
T 1di0_A 24 IVDEARKSFVAELAAKTGGSVEVEIFDVPGAYEIPLHAKTLARTGRYAAIV 74 (158)
T ss_dssp HHHHHHHHHHHHHHHHHTTSEEEEEEEESSGGGHHHHHHHHHHTSCCSEEE
T ss_pred HHHHHHHHHHHHHHHcCCCccceEEEECCcHHHHHHHHHHHHhcCCCCEEE
Confidence 456778888888888884 5788999 8777888888887777775
No 82
>1kg2_A A/G-specific adenine glycosylase; DNA repair, hydrolase; 1.20A {Escherichia coli} SCOP: a.96.1.2 PDB: 1kg3_A 1muy_A 1kg6_A 1kg5_A 1mun_A 1mud_A 1kg4_A 1weg_A 1wei_A* 1wef_A* 1kg7_A 1kqj_A
Probab=26.11 E-value=28 Score=31.01 Aligned_cols=15 Identities=27% Similarity=0.534 Sum_probs=12.3
Q ss_pred CCCCccHHHHHHHHH
Q 017910 186 SIRGIGGQTALKLIR 200 (364)
Q Consensus 186 ~IpGIG~ktA~kLik 200 (364)
.+||||++||--++.
T Consensus 113 ~lpGIG~~TA~~il~ 127 (225)
T 1kg2_A 113 ALPGVGRSTAGAILS 127 (225)
T ss_dssp TSTTCCHHHHHHHHH
T ss_pred cCCCCcHHHHHHHHH
Confidence 379999999887665
No 83
>3v32_B Ribonuclease ZC3H12A; rossmann-like sandwich fold, RNAse, cytoplastic, hydrolase; 2.00A {Homo sapiens} PDB: 3v34_A
Probab=26.09 E-value=1.8e+02 Score=25.23 Aligned_cols=34 Identities=15% Similarity=0.071 Sum_probs=23.1
Q ss_pred HhcCCCEEeccC---------cHHHHHHHHHHcCCeEEEecCCC
Q 017910 95 KLMGVPVVEAPS---------EAEAQCAALCKSGQVYAVASEDM 129 (364)
Q Consensus 95 ~~~GIp~i~APg---------EADaq~A~L~~~g~v~~ViS~Ds 129 (364)
...|+=++.-.+ .+|..|.++|.+.... |+|+|.
T Consensus 92 ~~~g~l~~TPs~~~~g~~~~~ydD~~il~~A~~~~g~-IVSND~ 134 (185)
T 3v32_B 92 EKKKILVFTPSRRVGGKRVVCYDDRFIVKLAYESDGI-VVSNDT 134 (185)
T ss_dssp HHTTCEEEECCCC-------CCHHHHHHHHHHHTTCE-EECSCC
T ss_pred HHCCCEEECCCcccCCCcccCccHHHHHHHHHHcCCE-EEeCcc
Confidence 334776666555 3788899998865443 778874
No 84
>2h56_A DNA-3-methyladenine glycosidase; 10174367, EC 3.2.2.-, struc genomics, PSI-2, protein structure initiative, joint center structural genomics; 2.55A {Bacillus halodurans}
Probab=26.06 E-value=28 Score=31.28 Aligned_cols=15 Identities=40% Similarity=0.552 Sum_probs=12.4
Q ss_pred CCCCccHHHHHHHHH
Q 017910 186 SIRGIGGQTALKLIR 200 (364)
Q Consensus 186 ~IpGIG~ktA~kLik 200 (364)
.|||||++||--++.
T Consensus 142 ~lpGIG~kTA~~ill 156 (233)
T 2h56_A 142 AIKGIGQWTAEMFMM 156 (233)
T ss_dssp TSTTCCHHHHHHHHH
T ss_pred hCCCcCHHHHHHHHH
Confidence 479999999977664
No 85
>3ix7_A Uncharacterized protein TTHA0540; unknown function, thermus thermophilus HB8, structural genom 2, protein structure initiative; HET: MSE; 2.15A {Thermus thermophilus}
Probab=25.77 E-value=2.4e+02 Score=23.09 Aligned_cols=42 Identities=17% Similarity=0.234 Sum_probs=26.4
Q ss_pred HHHHHHHHhcCCCEEe---ccCcHHHHHHHHHHcCCeEEEecCCCc
Q 017910 88 DDCKRLLKLMGVPVVE---APSEAEAQCAALCKSGQVYAVASEDMD 130 (364)
Q Consensus 88 ~~ik~lL~~~GIp~i~---APgEADaq~A~L~~~g~v~~ViS~DsD 130 (364)
+.+.++-+..++.++. ..+|+|+.+-.+|+..-+ .++|+|.-
T Consensus 63 ~iL~~L~~~~~vei~~~~~~~~~vD~~ll~lA~~~~~-~lvTnD~~ 107 (134)
T 3ix7_A 63 ETLERLREAAPLEVLETTPKGESVDEKLLFLARDLEA-ALVTNDHA 107 (134)
T ss_dssp HHHHHHHHHSCEEEECCCCSCSSHHHHHHHHHHHTTC-EEEESCHH
T ss_pred HHHHHHHhcCCEEEeCCCCCcccHHHHHHHHHHHhCC-EEEeCCHH
Confidence 4444444444455552 234999999999996545 47788653
No 86
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=25.32 E-value=82 Score=23.26 Aligned_cols=27 Identities=26% Similarity=0.436 Sum_probs=20.1
Q ss_pred CCCCHHHHHHHHHHhcCCChHHHHHHHHH
Q 017910 249 SAPDEEGLINFLVSENGFNSDRVTKAIEK 277 (364)
Q Consensus 249 ~~pd~e~L~~fl~~e~~f~~~rv~~~l~~ 277 (364)
..++.+.|..++ ++||+++.+..+|+.
T Consensus 26 ~~~~ee~I~~L~--eMGF~r~~a~~AL~~ 52 (73)
T 1vg5_A 26 VAASEEQIQKLV--AMGFDRTQVEVALAA 52 (73)
T ss_dssp SCCCHHHHHHHH--TTTCCHHHHHHHHHH
T ss_pred CcccHHHHHHHH--HcCCCHHHHHHHHHH
Confidence 345556666664 899999999988875
No 87
>1c2y_A Protein (lumazine synthase); riboflavin biosynthesis, transferase; HET: LMZ; 3.30A {Spinacia oleracea} SCOP: c.16.1.1
Probab=25.29 E-value=76 Score=26.98 Aligned_cols=44 Identities=32% Similarity=0.338 Sum_probs=34.3
Q ss_pred cchhhHHHHHHHHHhcCC----CEEeccC--cHHHHHHHHHHcCCeEEEe
Q 017910 82 VTKQHNDDCKRLLKLMGV----PVVEAPS--EAEAQCAALCKSGQVYAVA 125 (364)
Q Consensus 82 vt~~~~~~ik~lL~~~GI----p~i~APg--EADaq~A~L~~~g~v~~Vi 125 (364)
|+..+++-+.+.|+..|+ .++..|| |-=-.+..|++.+..|+|+
T Consensus 27 I~~~Ll~ga~~~l~~~Gv~~~i~v~~VPGafEiP~aa~~la~~~~yDavI 76 (156)
T 1c2y_A 27 VTRRLMEGALDTFKKYSVNEDIDVVWVPGAYELGVTAQALGKSGKYHAIV 76 (156)
T ss_dssp HHHHHHHHHHHHHHHTTCCSCCEEEEESSHHHHHHHHHHHHHTTCCSEEE
T ss_pred HHHHHHHHHHHHHHHcCCCCceEEEECCcHHHHHHHHHHHHhcCCCCEEE
Confidence 446778888899999886 5888999 7667778888887766665
No 88
>2csb_A Topoisomerase V, TOP61; topoisomerase IB, helix-turn-helix, helix-H helix, HHH motif, three helix bundle, methanopyrus kandleri isomerase; 2.30A {Methanopyrus kandleri} SCOP: a.60.2.4 a.60.2.4 a.60.2.4 a.60.2.4 a.267.1.1 PDB: 2csd_A
Probab=24.56 E-value=46 Score=31.09 Aligned_cols=103 Identities=20% Similarity=0.233 Sum_probs=58.0
Q ss_pred eHHHHHHHcCCCHHH-------HHHHHHHhCCCCC-------CC--------------------CCCccHHHHHHHHHHc
Q 017910 157 EVAKILEELNLTMDQ-------FIDLCILSGCDYC-------DS--------------------IRGIGGQTALKLIRQH 202 (364)
Q Consensus 157 ~~~~v~e~lgl~~~q-------fidl~iL~G~Dy~-------d~--------------------IpGIG~ktA~kLik~~ 202 (364)
++..+..++|++|+. |-.++.++.+|.- .| -.|+|-|||-.|++.|
T Consensus 352 tlatlidehglspdaadeliehfesiagilatdleeiermyeegrlseeayraaveiqlaeltkkegvgrktaerllraf 431 (519)
T 2csb_A 352 TLATLIDEHGLSPDAADELIEHFESIAGILATDLEEIERMYEEGRLSEEAYRAAVEIQLAELTKKEGVGRKTAERLLRAF 431 (519)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHSSHHHHHTSCHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTSTTCCHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHcccccHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHh
Confidence 456677888888743 3334555555632 11 1499999999999999
Q ss_pred CCHHHHHHHHHhcc---CCCCCCcchHHHHHHhCCCCcCCccccccCCCCCCCHHHHHHHHHHhcCC
Q 017910 203 GSIETILENINRER---YQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGF 266 (364)
Q Consensus 203 gsle~il~~l~~~k---~~i~e~~~~~~~~~lf~~p~V~~~~~~~~l~~~~pd~e~L~~fl~~e~~f 266 (364)
|+.|.+-+-..... ..--+..-.. .++.+|+--.. -+.....|.+....+|.+.-|+
T Consensus 432 gnpervkqlarefeieklasvegvger-----vlrslvpgyas--lisirgidreraerllkkyggy 491 (519)
T 2csb_A 432 GNPERVKQLAREFEIEKLASVEGVGER-----VLRSLVPGYAS--LISIRGIDRERAERLLKKYGGY 491 (519)
T ss_dssp SSHHHHHHHHHTTCHHHHHTSTTCSHH-----HHHHHSTTHHH--HHTSTTCCHHHHHHHHHHHTSH
T ss_pred CCHHHHHHHHHHHhHHHHhhccchHHH-----HHHHhccchhh--heeeccccHHHHHHHHHHhCCh
Confidence 99998765433110 0000111000 11112221111 2556788999998898544455
No 89
>2wq7_A RE11660P; lyase-DNA complex, DNA repair, DNA lesion, lyase; HET: TDY Z FAD; 2.00A {Drosophila melanogaster} PDB: 2wb2_A* 2wq6_A* 3cvu_A* 3cvv_A* 3cvy_A* 3cvw_A* 3cvx_A*
Probab=24.49 E-value=1.4e+02 Score=30.13 Aligned_cols=13 Identities=23% Similarity=0.322 Sum_probs=9.9
Q ss_pred ccHHHHHHHHHHc
Q 017910 190 IGGQTALKLIRQH 202 (364)
Q Consensus 190 IG~ktA~kLik~~ 202 (364)
.|...|.+.|..|
T Consensus 245 ~Ge~~A~~~L~~F 257 (543)
T 2wq7_A 245 GGETEALRRMEES 257 (543)
T ss_dssp CSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 4888888877665
No 90
>3tvs_A Cryptochrome-1; circadian clock light entrainment, jetlag, phosphorylation, gene regulation, signaling protein; HET: TPO FAD; 2.30A {Drosophila melanogaster} PDB: 4gu5_A*
Probab=24.28 E-value=96 Score=31.41 Aligned_cols=33 Identities=12% Similarity=-0.002 Sum_probs=21.8
Q ss_pred hHHHHHHHHHhc---CCCEEeccCcHHHHHHHHHHc
Q 017910 86 HNDDCKRLLKLM---GVPVVEAPSEAEAQCAALCKS 118 (364)
Q Consensus 86 ~~~~ik~lL~~~---GIp~i~APgEADaq~A~L~~~ 118 (364)
-+.++.+-|+.+ |++.++.-|++.+++..|+++
T Consensus 62 sL~~L~~~L~~~~~~G~~L~v~~G~~~~vl~~L~~~ 97 (538)
T 3tvs_A 62 SLQDIDDQLQAATDGRGRLLVFEGEPAYIFRRLHEQ 97 (538)
T ss_dssp HHHHHHHHGGGSCSSSSCCEEEESCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCCeEEEEeCCHHHHHHHHHHH
Confidence 345566666666 777777777777777777664
No 91
>2obx_A DMRL synthase 1, 6,7-dimethyl-8-ribityllumazine synthase 1, riboflavin S; alpha-beta, transferase; HET: INI; 2.53A {Mesorhizobium loti}
Probab=24.20 E-value=48 Score=28.23 Aligned_cols=44 Identities=20% Similarity=0.270 Sum_probs=34.2
Q ss_pred cchhhHHHHHHHHHhcCC-----CEEeccC--cHHHHHHHHHHcCCeEEEe
Q 017910 82 VTKQHNDDCKRLLKLMGV-----PVVEAPS--EAEAQCAALCKSGQVYAVA 125 (364)
Q Consensus 82 vt~~~~~~ik~lL~~~GI-----p~i~APg--EADaq~A~L~~~g~v~~Vi 125 (364)
|+..+++-+.+.|+..|+ .++..|| |-=-.+..|++.+..|+|+
T Consensus 25 I~~~Ll~gA~~~l~~~Gv~~~~i~v~~VPGafEiP~aa~~la~~~~yDavI 75 (157)
T 2obx_A 25 IVDQCVSAFEAEMADIGGDRFAVDVFDVPGAYEIPLHARTLAETGRYGAVL 75 (157)
T ss_dssp HHHHHHHHHHHHHHHHHTTSEEEEEEEESSGGGHHHHHHHHHHHTCCSEEE
T ss_pred HHHHHHHHHHHHHHHcCCCccceEEEECCcHHHHHHHHHHHHhcCCCCEEE
Confidence 456778888888888885 5778999 8777778888887777765
No 92
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=24.16 E-value=2.5e+02 Score=26.50 Aligned_cols=103 Identities=14% Similarity=0.214 Sum_probs=52.2
Q ss_pred HHHcCCCHHHHHHHHHHhCCCCCC-CC---------CCccHHHHHHHHHHcC-----CHHHHHHHHHhcc-CCCCCCcch
Q 017910 162 LEELNLTMDQFIDLCILSGCDYCD-SI---------RGIGGQTALKLIRQHG-----SIETILENINRER-YQIPEDWPY 225 (364)
Q Consensus 162 ~e~lgl~~~qfidl~iL~G~Dy~d-~I---------pGIG~ktA~kLik~~g-----sle~il~~l~~~k-~~i~e~~~~ 225 (364)
+..+|++++|+..+....- ...+ ++ =|+-+....++|++++ |++++-.++.-.+ ..+. .
T Consensus 53 L~d~Gfs~~~i~~il~~~P-~il~~~l~~~i~~L~~LGls~e~V~kiL~k~P~lL~~s~e~L~~~l~fL~~lGl~----~ 127 (335)
T 4fp9_B 53 LLDMGFSNAHINELLSVRR-GASLQQLLDIISEFILLGLNPEPVCVVLKKSPQLLKLPIMQMRKRSSYLQKLGLG----E 127 (335)
T ss_dssp HHHTTCCHHHHHHHHHHCS-SCCHHHHHHHHHHHHHTTCCHHHHHHHHHHCGGGGGSCHHHHHHHHHHHHHTTCT----T
T ss_pred HHHCCCCHHHHHHHHHhCc-ccchhHHHHHHHHHHHcCCCHHHHHHHHHhChhhccCCHHHHHHHHHHHHHcCCC----H
Confidence 3357999998887766543 1110 10 1566777777777776 3454443333221 1121 1
Q ss_pred HHHHH-HhCCCCcCCccccccCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHH
Q 017910 226 QEARR-LFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEK 277 (364)
Q Consensus 226 ~~~~~-lf~~p~V~~~~~~~~l~~~~pd~e~L~~fl~~e~~f~~~rv~~~l~~ 277 (364)
.+.+. +...|.+- ....-....-+.||..++||+.+.|...+.+
T Consensus 128 ~~i~~ll~~~P~lL--------~~s~e~i~~~v~~L~~~lGfS~~ev~~mv~r 172 (335)
T 4fp9_B 128 GKLKRVLYCCPEIF--------TMRQQDINDTVRLLKEKCLFTVQQVTKILHS 172 (335)
T ss_dssp TTHHHHHHHCGGGG--------TSCHHHHHHHHHHHHHTSCCCHHHHHHHHHH
T ss_pred HHHHHHHHhCchhh--------ccChHHHHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 22222 22344332 1111123344556657888888888776543
No 93
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=24.02 E-value=46 Score=23.81 Aligned_cols=26 Identities=27% Similarity=0.426 Sum_probs=20.2
Q ss_pred CCCHHHHHHHHHHhcCCChHHHHHHHHH
Q 017910 250 APDEEGLINFLVSENGFNSDRVTKAIEK 277 (364)
Q Consensus 250 ~pd~e~L~~fl~~e~~f~~~rv~~~l~~ 277 (364)
.+|.+.|.+++ ++||+++++.++|..
T Consensus 7 ~~~~~~v~~L~--~MGF~~~~a~~AL~~ 32 (64)
T 1whc_A 7 GAELTALESLI--EMGFPRGRAEKALAL 32 (64)
T ss_dssp CCCCCHHHHHH--TTTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHH--HcCCCHHHHHHHHHH
Confidence 45666777776 899999999888764
No 94
>1orn_A Endonuclease III; DNA repair, DNA glycosylase, [4Fe-4S] cluster, iron-sulfur cluster, hydrolase/DNA complex; HET: PED; 1.70A {Geobacillus stearothermophilus} SCOP: a.96.1.1 PDB: 1orp_A* 1p59_A*
Probab=23.36 E-value=34 Score=30.57 Aligned_cols=15 Identities=27% Similarity=0.527 Sum_probs=12.3
Q ss_pred CCCCccHHHHHHHHH
Q 017910 186 SIRGIGGQTALKLIR 200 (364)
Q Consensus 186 ~IpGIG~ktA~kLik 200 (364)
.+||||++||--++.
T Consensus 117 ~lpGIG~~TA~~il~ 131 (226)
T 1orn_A 117 KLPGVGRKTANVVVS 131 (226)
T ss_dssp TSTTCCHHHHHHHHH
T ss_pred HCCCccHHHHHHHHH
Confidence 379999999977764
No 95
>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=23.28 E-value=80 Score=23.85 Aligned_cols=26 Identities=23% Similarity=0.296 Sum_probs=21.2
Q ss_pred CCCHHHHHHHHHHhcCCChHHHHHHHHH
Q 017910 250 APDEEGLINFLVSENGFNSDRVTKAIEK 277 (364)
Q Consensus 250 ~pd~e~L~~fl~~e~~f~~~rv~~~l~~ 277 (364)
.+|.+.+.+++ ++||+++++.++|..
T Consensus 27 ~~~e~~v~~L~--~MGF~~~~a~~AL~~ 52 (84)
T 1vek_A 27 VANEEIVAQLV--SMGFSQLHCQKAAIN 52 (84)
T ss_dssp CCCHHHHHHHH--HHTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHH--HcCCCHHHHHHHHHH
Confidence 46888887776 799999999988754
No 96
>2abk_A Endonuclease III; DNA-repair, DNA glycosylase; 1.85A {Escherichia coli} SCOP: a.96.1.1
Probab=23.23 E-value=33 Score=30.17 Aligned_cols=15 Identities=27% Similarity=0.530 Sum_probs=12.2
Q ss_pred CCCccHHHHHHHHHH
Q 017910 187 IRGIGGQTALKLIRQ 201 (364)
Q Consensus 187 IpGIG~ktA~kLik~ 201 (364)
+||||++||--++..
T Consensus 114 l~GIG~~tA~~il~~ 128 (211)
T 2abk_A 114 LPGVGRKTANVVLNT 128 (211)
T ss_dssp STTCCHHHHHHHHHH
T ss_pred CCCCChHHHHHHHHH
Confidence 699999998776653
No 97
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.22 E-value=79 Score=23.87 Aligned_cols=26 Identities=38% Similarity=0.529 Sum_probs=21.5
Q ss_pred CCCHHHHHHHHHHhcCCChHHHHHHHHH
Q 017910 250 APDEEGLINFLVSENGFNSDRVTKAIEK 277 (364)
Q Consensus 250 ~pd~e~L~~fl~~e~~f~~~rv~~~l~~ 277 (364)
.+|.+.+.+++ ++||+++++.++|..
T Consensus 27 ~~~e~~i~~L~--~MGF~~~~a~~AL~~ 52 (83)
T 2dai_A 27 RVDEAALRQLT--EMGFPENRATKALQL 52 (83)
T ss_dssp SCCHHHHHHHH--HHTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHH--HcCCCHHHHHHHHHH
Confidence 47888888886 799999999988754
No 98
>1whz_A Hypothetical protein; alpha and beta protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.52A {Thermus thermophilus} SCOP: d.50.3.2
Probab=22.78 E-value=1.9e+02 Score=20.35 Aligned_cols=65 Identities=18% Similarity=0.132 Sum_probs=37.0
Q ss_pred CcHHHHHHHHHHcCCeEEEecCCCcccccccCeeEEEeecCCCCCCccEEEeHHHHHHHcCCCHHHHHH
Q 017910 106 SEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFID 174 (364)
Q Consensus 106 gEADaq~A~L~~~g~v~~ViS~DsD~l~fg~~~vi~~l~~~~~~~~~v~~~~~~~v~e~lgl~~~qfid 174 (364)
.-..+.+..|.+.|....=.+++-..+.-..... ..+-.. .. ++.......++...|++.++|.+
T Consensus 5 ~~~~elik~L~~~G~~~~r~~GSH~~~~~~~~~~-~~vP~h--~~-ei~~g~lk~Ilkqagl~~eef~~ 69 (70)
T 1whz_A 5 PRPEEVARKLRRLGFVERMAKGGHRLYTHPDGRI-VVVPFH--SG-ELPKGTFKRILRDAGLTEEEFHN 69 (70)
T ss_dssp CCHHHHHHHHHHTTCEEEEEETTEEEEECTTSCE-EEEECS--SS-SCCHHHHHHHHHHTTCCHHHHHH
T ss_pred CCHHHHHHHHHHCCCEEeCCCCCCceEecCCCCe-eEecCC--cC-cCCHHHHHHHHHHcCCCHHHHhh
Confidence 3455666667777765322344444444322221 122211 11 45567888999999999999865
No 99
>3s6i_A DNA-3-methyladenine glycosylase 1; DNA glycosylase, DNA repair, helix-hairpin-helix (HHH), ABAS tetrahydrofuran (THF); HET: 3DR; 2.28A {Schizosaccharomyces pombe}
Probab=22.26 E-value=37 Score=30.44 Aligned_cols=15 Identities=40% Similarity=0.516 Sum_probs=12.3
Q ss_pred CCCCccHHHHHHHHH
Q 017910 186 SIRGIGGQTALKLIR 200 (364)
Q Consensus 186 ~IpGIG~ktA~kLik 200 (364)
.|||||++||--++-
T Consensus 143 ~l~GIG~~TA~~ill 157 (228)
T 3s6i_A 143 QIKGIGRWTVEMLLI 157 (228)
T ss_dssp TSTTCCHHHHHHHHH
T ss_pred hCCCcCHHHHHHHHH
Confidence 479999999977664
No 100
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=21.66 E-value=47 Score=23.78 Aligned_cols=25 Identities=28% Similarity=0.364 Sum_probs=19.7
Q ss_pred CCHHHHHHHHHHhcCCChHHHHHHHHH
Q 017910 251 PDEEGLINFLVSENGFNSDRVTKAIEK 277 (364)
Q Consensus 251 pd~e~L~~fl~~e~~f~~~rv~~~l~~ 277 (364)
||.+.+.+++ ++||+++++.++|..
T Consensus 18 ~~e~~i~~L~--~MGF~~~~a~~AL~~ 42 (64)
T 2cpw_A 18 KHGSALDVLL--SMGFPRARAQKALAS 42 (64)
T ss_dssp SCCCHHHHHH--HHTCCHHHHHHHHHH
T ss_pred CCHHHHHHHH--HcCCCHHHHHHHHHH
Confidence 6767777775 789999999888754
No 101
>2zvk_U DNA polymerase ETA, proliferating cell nuclear antigen; DNA replication, PCNA, clamp, translesion synthesis, TLS, DN polymerase, TLS polymerase; HET: DNA; 2.70A {Homo sapiens}
Probab=21.51 E-value=14 Score=21.82 Aligned_cols=12 Identities=58% Similarity=1.027 Sum_probs=9.4
Q ss_pred CCcccccCcccC
Q 017910 288 GRLESFFKPVAN 299 (364)
Q Consensus 288 ~rld~ff~~~~~ 299 (364)
.+||+||+.-+.
T Consensus 10 ~TLesFFK~L~~ 21 (26)
T 2zvk_U 10 QTLESFFKPLTH 21 (26)
T ss_pred ccHHHHhccCCc
Confidence 389999997653
No 102
>2yg9_A DNA-3-methyladenine glycosidase II, putative; hydrolase, DNA repair; 1.95A {Deinococcus radiodurans} PDB: 2yg8_A
Probab=21.39 E-value=39 Score=30.15 Aligned_cols=15 Identities=33% Similarity=0.421 Sum_probs=12.0
Q ss_pred CCCCccHHHHHHHHH
Q 017910 186 SIRGIGGQTALKLIR 200 (364)
Q Consensus 186 ~IpGIG~ktA~kLik 200 (364)
.|||||++||--++-
T Consensus 150 ~l~GIG~~TA~~ill 164 (225)
T 2yg9_A 150 QLPGIGRWTAEMFLL 164 (225)
T ss_dssp TSTTCCHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHH
Confidence 479999999876654
No 103
>3i0w_A 8-oxoguanine-DNA-glycosylase; OGG, cacogg, DNA, 8-OXOG, 8OXOG, glycosylase, cytosine, hydrolase,lyase/DNA complex; HET: 8OG; 1.73A {Clostridium acetobutylicum} PDB: 3i0x_A* 3f10_A* 3f0z_A
Probab=21.30 E-value=39 Score=31.43 Aligned_cols=15 Identities=27% Similarity=0.346 Sum_probs=12.3
Q ss_pred CCCCccHHHHHHHHH
Q 017910 186 SIRGIGGQTALKLIR 200 (364)
Q Consensus 186 ~IpGIG~ktA~kLik 200 (364)
.+|||||+||--++-
T Consensus 215 ~lpGIG~~TA~~ill 229 (290)
T 3i0w_A 215 KFMGVGPQVADCIML 229 (290)
T ss_dssp TSTTCCHHHHHHHHH
T ss_pred hCCCcCHHHHHHHHH
Confidence 479999999977664
No 104
>1w8i_A Putative VAPC ribonuclease AF_1683; structural genomics, unknown function, hypothetical protein, PSI, protein structure initiative, MCSG; 2.10A {Archaeoglobus fulgidus} SCOP: c.120.1.1
Probab=21.10 E-value=1.1e+02 Score=24.67 Aligned_cols=50 Identities=12% Similarity=0.050 Sum_probs=33.4
Q ss_pred ccchhhHHHHHHHHH-hcCCCEEecc-CcHHHHHHHHHHcCCeEEEecCCCcccc--cc
Q 017910 81 KVTKQHNDDCKRLLK-LMGVPVVEAP-SEAEAQCAALCKSGQVYAVASEDMDSLT--FG 135 (364)
Q Consensus 81 ~vt~~~~~~ik~lL~-~~GIp~i~AP-gEADaq~A~L~~~g~v~~ViS~DsD~l~--fg 135 (364)
.++.+......++.. ..+- .+ .-+|+.++..+...-+ .++|.|+|+-. +|
T Consensus 77 ~~~~~~~~~A~~l~~~~~~~----~~l~~~Dali~A~A~~~g~-~l~T~D~dF~~~~~g 130 (156)
T 1w8i_A 77 YTDDEVERKALEVFKARVYE----KGFSYTDAISEVVAEELKL-KLISYDSRFSLPTIG 130 (156)
T ss_dssp CCCHHHHHHHHHHHHHTTTS----TTCCHHHHHHHHHHHHHTC-EEECSCTTCSSCEEC
T ss_pred eCCHHHHHHHHHHHHHHhcc----CCCCHhHHHHHHHHHHcCC-EEEEeCcccCcccCC
Confidence 455666666666665 4431 22 3689999998875334 68999999977 74
No 105
>1ejb_A Lumazine synthase; analysis, inhibitor complex, vitamin biosynthesis transferase; HET: INJ; 1.85A {Saccharomyces cerevisiae} SCOP: c.16.1.1 PDB: 2jfb_A
Probab=20.82 E-value=1.4e+02 Score=25.70 Aligned_cols=44 Identities=11% Similarity=0.129 Sum_probs=32.8
Q ss_pred cchhhHHHHHHHHHhcCCC-----EEeccC--cHHHHHHHHHH-----cCCeEEEe
Q 017910 82 VTKQHNDDCKRLLKLMGVP-----VVEAPS--EAEAQCAALCK-----SGQVYAVA 125 (364)
Q Consensus 82 vt~~~~~~ik~lL~~~GIp-----~i~APg--EADaq~A~L~~-----~g~v~~Vi 125 (364)
|+..+++-+.+.|+..|+. ++..|| |-=-.+..|++ .+..|+|+
T Consensus 30 I~~~Ll~gA~~~L~~~Gv~~~~i~v~~VPGafEiP~aak~la~~~~~~~~~yDavI 85 (168)
T 1ejb_A 30 IIDALVKGAIERMASLGVEENNIIIETVPGSYELPWGTKRFVDRQAKLGKPLDVVI 85 (168)
T ss_dssp HHHHHHHHHHHHHHHTTCCGGGEEEEECSSGGGHHHHHHHHHHHHHHTTCCCSEEE
T ss_pred HHHHHHHHHHHHHHHcCCCccceEEEECCcHHHHHHHHHHHHhhccccCCCcCEEE
Confidence 4467788899999999875 678999 77677777876 45556554
No 106
>4b21_A Probable DNA-3-methyladenine glycosylase 2; hydrolase-DNA complex, helix-hairpin-helix; HET: BGC 3DR; 1.45A {Schizosaccharomyces pombe} PDB: 4b22_A* 4b23_A* 4b24_A*
Probab=20.69 E-value=41 Score=30.23 Aligned_cols=15 Identities=20% Similarity=0.113 Sum_probs=12.1
Q ss_pred CCCCccHHHHHHHHH
Q 017910 186 SIRGIGGQTALKLIR 200 (364)
Q Consensus 186 ~IpGIG~ktA~kLik 200 (364)
.|||||++||--++-
T Consensus 154 ~l~GIG~~TA~~ill 168 (232)
T 4b21_A 154 KIKGVKRWTIEMYSI 168 (232)
T ss_dssp TSTTCCHHHHHHHHH
T ss_pred hCCCcCHHHHHHHHH
Confidence 479999999877654
No 107
>3mk7_B Cytochrome C oxidase, CBB3-type, subunit O; TM helices, oxidoreductase; HET: HEM HEC FC6; 3.20A {Pseudomonas stutzeri}
Probab=20.46 E-value=51 Score=29.31 Aligned_cols=33 Identities=30% Similarity=0.400 Sum_probs=24.3
Q ss_pred HHHHHHHHhcCCCEEec-----------cCcHHHHHHHHHHcCC
Q 017910 88 DDCKRLLKLMGVPVVEA-----------PSEAEAQCAALCKSGQ 120 (364)
Q Consensus 88 ~~ik~lL~~~GIp~i~A-----------PgEADaq~A~L~~~g~ 120 (364)
..-.+.|+.+|+||-.. ..|+||.+|||..-|.
T Consensus 154 ~~~~~~l~~~gvpy~~~~i~~a~~~~~~~~e~~alvAYLq~Lg~ 197 (203)
T 3mk7_B 154 AKKMSALRMLGVPYTEEDIAGARDSVNGKTEMDAMVAYLQVLGT 197 (203)
T ss_dssp HHHHHHHHHTTCCCCHHHHTTSHHHHTTCBHHHHHHHHHTTTTT
T ss_pred HHHHHHHHhcCCCCCHHHHHhHHHHhcchhHHHHHHHHHHHhCc
Confidence 33446677789999543 3599999999987663
No 108
>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A
Probab=20.39 E-value=1e+02 Score=27.68 Aligned_cols=105 Identities=10% Similarity=0.156 Sum_probs=62.0
Q ss_pred HHHHcCCCHHHHHHHHHH----hCCCCCCCCC---------CccHHHHHHHHHHcC-----CHHHHHHHHHhccCCCCCC
Q 017910 161 ILEELNLTMDQFIDLCIL----SGCDYCDSIR---------GIGGQTALKLIRQHG-----SIETILENINRERYQIPED 222 (364)
Q Consensus 161 v~e~lgl~~~qfidl~iL----~G~Dy~d~Ip---------GIG~ktA~kLik~~g-----sle~il~~l~~~k~~i~e~ 222 (364)
.+..+|+++.++.-.-.+ +++|...++. |+-+..-.++|.+++ ++|++...++-... + .
T Consensus 11 ~L~~lGv~~~~i~k~p~~~p~lL~~~~~~~l~~~l~fL~~lG~~~~~i~~il~~~P~lL~~~~e~l~p~v~~L~~-~--G 87 (270)
T 3m66_A 11 KLVLLGVDLSKIEKHPEAANLLLRLDFEKDIKQMLLFLKDVGIEDNQLGAFLTKNHAIFSEDLENLKTRVAYLHS-K--N 87 (270)
T ss_dssp HHHHTTCCHHHHTTSHHHHHHHHTCCHHHHTHHHHHHHHHHTCCGGGHHHHHHHCTTGGGSCHHHHHHHHHHHHH-T--T
T ss_pred HHHHcCCCHHHHhhccchhhhhhccChhhhHHHHHHHHHHcCCCHHHHHHHHHhCChhhhCCHHHHHHHHHHHHH-c--C
Confidence 355779988877655444 6767655541 666777788888887 45665444442221 1 2
Q ss_pred cchHHHHHH-hCCCCcCCccccccCCCCCCCHHHHHHHHHHhcCCChHHHHHHHH
Q 017910 223 WPYQEARRL-FKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIE 276 (364)
Q Consensus 223 ~~~~~~~~l-f~~p~V~~~~~~~~l~~~~pd~e~L~~fl~~e~~f~~~rv~~~l~ 276 (364)
+...++..+ ..+|.+-. .++ . +...-.+||.+++|++.+.+.+.+.
T Consensus 88 ls~~~i~~~l~~~P~lL~-~s~-----~--~l~~~v~~L~~~lG~~~~~i~~ll~ 134 (270)
T 3m66_A 88 FSKADVAQMVRKAPFLLN-FSV-----E--RLDNRLGFFQKELELSVKKTRDLVV 134 (270)
T ss_dssp CCHHHHHHHHHHSTTGGG-SCH-----H--HHHHHHHHHHHHHCCCHHHHHHHHH
T ss_pred CCHHHHHHHHHhCCHHHc-CCH-----H--HHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 333444443 45665431 111 0 2455667886689999988877664
No 109
>1mpg_A ALKA, 3-methyladenine DNA glycosylase II; DNA repair, base excision, methylation, ALK hydrolase; 1.80A {Escherichia coli} SCOP: a.96.1.3 d.129.1.2 PDB: 1diz_A 1pvs_A* 3cvs_A* 3cvt_A* 3cw7_A* 3cwa_A* 3cws_A* 3cwt_A* 3cwu_A* 3d4v_A* 3ogd_A* 3oh9_A* 3oh6_A*
Probab=20.19 E-value=42 Score=30.87 Aligned_cols=15 Identities=33% Similarity=0.310 Sum_probs=12.2
Q ss_pred CCCCccHHHHHHHHH
Q 017910 186 SIRGIGGQTALKLIR 200 (364)
Q Consensus 186 ~IpGIG~ktA~kLik 200 (364)
.|||||++||--++.
T Consensus 211 ~lpGIG~~TA~~ill 225 (282)
T 1mpg_A 211 TFPGIGRWTANYFAL 225 (282)
T ss_dssp TSTTCCHHHHHHHHH
T ss_pred cCCCcCHHHHHHHHH
Confidence 479999999977654
No 110
>2jhn_A ALKA, 3-methyladenine DNA-glycosylase; DNA repair, N1-methyladenine, N3-methylcytosine, hyperthermophiles, hydrolase; HET: MBO MES; 1.8A {Archaeoglobus fulgidus} PDB: 2jhj_A
Probab=20.08 E-value=43 Score=31.13 Aligned_cols=37 Identities=22% Similarity=0.299 Sum_probs=23.5
Q ss_pred HHcCCCHH---HHHHHHHHhCCCCCC--------------CCCCccHHHHHHHHHH
Q 017910 163 EELNLTMD---QFIDLCILSGCDYCD--------------SIRGIGGQTALKLIRQ 201 (364)
Q Consensus 163 e~lgl~~~---qfidl~iL~G~Dy~d--------------~IpGIG~ktA~kLik~ 201 (364)
..+|+... -++.++.. | |+.. .|||||++||--++..
T Consensus 176 r~~G~~~rKa~~i~~~A~~-g-~l~~l~~~~~~e~~~~L~~lpGIG~~TA~~ill~ 229 (295)
T 2jhn_A 176 RECGLSRRKAELIVEIAKE-E-NLEELKEWGEEEAYEYLTSFKGIGRWTAELVLSI 229 (295)
T ss_dssp HHTTCCHHHHHHHHHHHTC-S-SGGGGGGSCHHHHHHHHHTSTTCCHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHC-C-CHhhhhcCCHHHHHHHHhcCCCcCHHHHHHHHHH
Confidence 56788753 34555544 4 4431 3699999998776643
Done!