BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017911
(364 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P06236|NODH_RHIME Nodulation protein H OS=Rhizobium meliloti (strain 1021) GN=nodH
PE=4 SV=1
Length = 247
Score = 55.8 bits (133), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 63/249 (25%), Positives = 108/249 (43%), Gaps = 38/249 (15%)
Query: 129 PVQYFAIISMQRSGSGWFETLLNSHMNVSSNGEIFSTLDTVY---------NLDLFTSA- 178
P Q FAI++M R+G+ + E L+N H NV SNGE+ +T DT + + +L A
Sbjct: 7 PPQPFAILAMPRTGTHYLEELVNEHPNVLSNGELLNTYDTNWPDKERLLLSDRELLERAF 66
Query: 179 -----SKNECSAAVGFKWMLNQGLMQYHKE-IVEYFNRRGVSVIFLFRRNLLRRLVS-VL 231
++ VG K +N+ Q E G+ VI + RRN L L S V
Sbjct: 67 LRYPPHSDKKVTHVGCK--INEPQFQERPSFFAELTAWPGLKVILVIRRNTLESLRSFVQ 124
Query: 232 ANSYDRYAKLLNGTHKSHVHSHQEAEALSRYKPAINSTLLIAE--LKEMELTAAKAFEYF 289
A ++ K + + S P + E K + A+ F
Sbjct: 125 ARQTRQWLKFKSDS--------------SAPPPPVMLPFATCEAYFKAADDFHARVVYAF 170
Query: 290 NSTRHIVLYYEDLVKNRKK-LKEVLEFLRLPQMKLKSRQVKIHRGT--LSEHIQNWNDVK 346
+S+R ++ YE L+++ + VL+FL P ++L R + + T L + ++N+++++
Sbjct: 171 DSSRIRLIEYERLLRDPVPCVATVLDFLGAPALQLADRGILRRQETRPLDQTVRNFHELR 230
Query: 347 KTLNGTEYG 355
Y
Sbjct: 231 VHFANGPYA 239
>sp|P06237|NOH4_RHIML Nodulation protein H OS=Rhizobium meliloti GN=nodH PE=4 SV=1
Length = 247
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 62/254 (24%), Positives = 108/254 (42%), Gaps = 48/254 (18%)
Query: 129 PVQYFAIISMQRSGSGWFETLLNSHMNVSSNGEIFSTLDTVY---------NLDLFTSAS 179
P + FAI++M+R+G+ + E L+N H NV SNGE+ +T DT + + +L A
Sbjct: 7 PPRPFAILAMRRTGTHYLEELVNEHPNVLSNGELLNTYDTNWPDKERLLLSDRELLERAC 66
Query: 180 ------KNECSAAVGFKWMLNQGLMQYHKE-IVEYFNRRGVSVIFLFRRNLLRRLVSVLA 232
++ VG K +N+ Q E G+ VI + RRN L L
Sbjct: 67 WRYPPHSDKKVTHVGCK--INEPQFQERPSFFAELTAWPGLKVILVIRRNTLESL----- 119
Query: 233 NSYDRYAKLLNGTHKSHVHSHQEAEAL------SRYKPAINSTLLIAE--LKEMELTAAK 284
+S V + Q + L S P + E K + A+
Sbjct: 120 --------------RSFVQARQTRQWLQFKSDSSAPPPPVMLPFATCEAYFKAADDFHAR 165
Query: 285 AFEYFNSTRHIVLYYEDLVKNR-KKLKEVLEFLRLPQMKLKSRQVKIHRGT--LSEHIQN 341
F+S+R ++ YE L+++ + VL+FL P ++L R + + T L + ++N
Sbjct: 166 VVNAFDSSRIRLIEYERLLRDPVPCVATVLDFLGAPALQLADRGILRRQETRPLDQTVRN 225
Query: 342 WNDVKKTLNGTEYG 355
+++++ Y
Sbjct: 226 FHELRVHFANGPYA 239
>sp|P52994|NODH_RHITR Nodulation protein H OS=Rhizobium tropici GN=nodH PE=4 SV=1
Length = 249
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 58/249 (23%), Positives = 104/249 (41%), Gaps = 37/249 (14%)
Query: 133 FAIISMQRSGSGWFETLLNSHMNVSSNGEIFSTLDTVY-NLDLFTSASKNECSAA----- 186
F I++M R+G+ + E LLN H N+ SNGE+ ++ D + + D + + A
Sbjct: 11 FVILAMPRTGTHYLEALLNDHPNILSNGELLNSYDENWPDKDRLRHSDRELLELAYMRYP 70
Query: 187 --------VGFKWMLNQGLMQYHKEIVEYFNR-RGVSVIFLFRRNL--LRRLVSVLANSY 235
VG K +N+ + R +G+ VI L R L LR LV A
Sbjct: 71 PAKKKVTHVGCK--INEPQFYERPGFFDELARWQGLKVILLTRNTLESLRSLVQ--ARQT 126
Query: 236 DRYAKLLNGTHKSHVHSHQEAEALSRYKPAINSTLLIAELKEMELTAAKAFEYFNSTRHI 295
++ K ++ S E + +K A + A+ + F+ ++ +
Sbjct: 127 GQWLKFSPDRNEPPSVSLSVNECEAYFKAADD-------------FHARVKDAFDPSKLL 173
Query: 296 VLYYED-LVKNRKKLKEVLEFLRLPQMKLKSRQVKIHRGT--LSEHIQNWNDVKKTLNGT 352
++ Y+D L+K L VL FL P + +R + T L+ ++N+ ++++ G
Sbjct: 174 MIEYQDLLLKPSACLAAVLAFLGAPAHRFSNRATIQRQETRSLARSLRNFVELRRHFAGG 233
Query: 353 EYGSLLLAD 361
Y D
Sbjct: 234 PYAKFFELD 242
>sp|Q6AFH2|GLNE_LEIXX Glutamate-ammonia-ligase adenylyltransferase OS=Leifsonia xyli
subsp. xyli (strain CTCB07) GN=glnE PE=3 SV=1
Length = 1007
Score = 35.8 bits (81), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 40/83 (48%), Gaps = 10/83 (12%)
Query: 255 EAEALSRYKPAINSTLLIAELKEMELTAAKAFEYFNSTRHIVLYYEDLVKNRKKLKEVLE 314
EA+AL R + + LI + + + + R+ E V+ K++K +E
Sbjct: 811 EAQALLRARGVAGDSALIGDFETLA----------DEVRYPASIGEQAVREVKRIKARIE 860
Query: 315 FLRLPQMKLKSRQVKIHRGTLSE 337
RLPQ +R +K+ RG+LS+
Sbjct: 861 NERLPQGADPARHLKLGRGSLSD 883
>sp|A2ASS6|TITIN_MOUSE Titin OS=Mus musculus GN=Ttn PE=1 SV=1
Length = 35213
Score = 35.4 bits (80), Expect = 0.72, Method: Composition-based stats.
Identities = 35/106 (33%), Positives = 52/106 (49%), Gaps = 14/106 (13%)
Query: 248 SHVHSHQEAEALSRYKPAINSTLLIAELKEMELTAAKAFEYFNSTRHIVLYYEDLVKNRK 307
S V SH E L+ + A S +LIAE E++ +AA + E + IV +E++ K +
Sbjct: 34774 SEVKSH---ETLAIKEEA--SKVLIAE--EVKRSAAASLE-----KSIV--HEEVTKTSQ 34819
Query: 308 KLKEVLEFLRLPQMKLKSRQVKIHRGTLSEHIQNWNDVKKTLNGTE 353
+EV + + + K R TL +I DVK LNGTE
Sbjct: 34820 ASEEVKTHAEIKTLSTQMNITKGQRATLKANIAGATDVKWVLNGTE 34865
>sp|Q8ER50|MURD_OCEIH UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Oceanobacillus
iheyensis (strain DSM 14371 / JCM 11309 / KCTC 3954 /
HTE831) GN=murD PE=3 SV=1
Length = 449
Score = 32.3 bits (72), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 42/92 (45%), Gaps = 4/92 (4%)
Query: 129 PVQYFAIISMQRSGSGWFETLLNSHMNVSSNGEIFSTLD-TVYNLDLFTSA---SKNECS 184
P Q+ ++ + +SG+ LL +H+ V+ N + + D TV L + + S
Sbjct: 8 PYQHVLVLGLAKSGTAAANVLLQNHIQVTINDGMATLEDATVQKLQTMGAELVLGSHPIS 67
Query: 185 AAVGFKWMLNQGLMQYHKEIVEYFNRRGVSVI 216
G ++ ++Y IVE RRG+ VI
Sbjct: 68 VLDGKDLIVKNPGIRYDNVIVEEAQRRGIPVI 99
>sp|P17411|CHBF_ECOLI 6-phospho-beta-glucosidase OS=Escherichia coli (strain K12) GN=chbF
PE=1 SV=4
Length = 450
Score = 32.0 bits (71), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 35/161 (21%), Positives = 67/161 (41%), Gaps = 26/161 (16%)
Query: 183 CSAAVGFKWMLNQGLMQYHKEIVEYFNRRGVSVIFLFRRNLLRRLVSVLANSYDRYAKLL 242
C+ +G K + LM + + I LF N + + VL N R+A+LL
Sbjct: 172 CNIPIGMKMFIRDVLMLKDSDDLS---------IDLFGLNHMVFIKDVLINGKSRFAELL 222
Query: 243 NGTHKSHVHSHQE--------AEALSRYKPAINSTLLIAELKEMELTAAKAFEYF-NSTR 293
+G + + +E L R + + L+ K+ E+ A + EY+ R
Sbjct: 223 DGVASGQLKASSVKNIFDLPFSEGLIRSLNLLPCSYLLYYFKQKEMLAIEMGEYYKGGAR 282
Query: 294 HIVLYYEDLVKNRKKLKEVLEFLRLPQMKLKSRQVKIHRGT 334
V+ +K K++ E + P++K+K ++++ G
Sbjct: 283 AQVV--------QKVEKQLFELYKNPELKVKPKELEQRGGA 315
>sp|Q9D9T8|EFHC1_MOUSE EF-hand domain-containing protein 1 OS=Mus musculus GN=Efhc1 PE=1
SV=1
Length = 648
Score = 31.6 bits (70), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Query: 293 RHIVLYYEDLVKNRKKLKEVLEFLRLPQMKLKSRQVKIHRGTLSEHIQNWNDVKKTLNGT 352
RH+ +YY + ++ V+E +PQ KL RQ + + + +H +W D+ + +N T
Sbjct: 118 RHVNIYYYLEDDSMSVIEPVVENSGIPQGKLIKRQ-RFTKNDMGDHY-HWKDLNRGINLT 175
Query: 353 EYG 355
YG
Sbjct: 176 VYG 178
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.135 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 129,136,284
Number of Sequences: 539616
Number of extensions: 5159861
Number of successful extensions: 14860
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 14851
Number of HSP's gapped (non-prelim): 17
length of query: 364
length of database: 191,569,459
effective HSP length: 119
effective length of query: 245
effective length of database: 127,355,155
effective search space: 31202012975
effective search space used: 31202012975
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)