Query 017911
Match_columns 364
No_of_seqs 163 out of 525
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 04:30:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017911.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017911hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF09037 Sulphotransf: Stf0 su 100.0 4E-29 8.6E-34 236.9 13.2 204 132-346 1-242 (245)
2 COG4424 Uncharacterized protei 99.8 9.9E-20 2.2E-24 165.5 10.2 182 130-323 5-219 (250)
3 PF00685 Sulfotransfer_1: Sulf 99.7 1.2E-16 2.5E-21 148.4 12.7 174 131-321 2-199 (267)
4 KOG3704 Heparan sulfate D-gluc 99.4 8.8E-13 1.9E-17 125.0 9.0 178 130-321 107-290 (360)
5 PLN02164 sulfotransferase 99.4 1.8E-12 3.9E-17 128.9 10.4 102 205-322 158-263 (346)
6 KOG3988 Protein-tyrosine sulfo 99.3 7.9E-12 1.7E-16 119.3 10.8 165 130-322 70-264 (378)
7 KOG3703 Heparan sulfate N-deac 99.3 1.6E-11 3.6E-16 125.4 12.1 185 123-321 588-792 (873)
8 KOG1584 Sulfotransferase [Gene 99.3 1.2E-11 2.5E-16 119.7 10.5 96 204-322 116-219 (297)
9 PF13469 Sulfotransfer_3: Sulf 99.3 1.8E-11 3.9E-16 107.9 10.8 33 131-163 1-34 (215)
10 COG3551 Uncharacterized protei 94.5 0.28 6E-06 48.4 9.7 79 211-322 132-211 (402)
11 PF06990 Gal-3-0_sulfotr: Gala 91.6 1.4 3E-05 45.3 10.2 99 126-233 62-168 (402)
12 PF03567 Sulfotransfer_2: Sulf 89.6 0.59 1.3E-05 42.6 5.1 27 129-155 7-33 (253)
13 KOG3922 Sulfotransferases [Pos 83.9 2.6 5.6E-05 41.7 6.1 35 198-233 144-180 (361)
14 KOG3491 Predicted membrane pro 64.3 5.7 0.00012 29.9 2.1 28 16-43 30-57 (65)
15 PHA02975 hypothetical protein; 37.9 27 0.00059 27.1 2.2 29 18-46 38-66 (69)
16 PHA02692 hypothetical protein; 33.8 48 0.001 25.8 3.0 29 18-46 40-68 (70)
17 PF01118 Semialdhyde_dh: Semia 33.7 30 0.00065 28.8 2.1 24 133-157 2-26 (121)
18 PHA02844 putative transmembran 32.5 48 0.001 26.1 2.8 36 11-47 36-71 (75)
19 PF13521 AAA_28: AAA domain; P 28.4 37 0.00079 29.4 1.8 30 132-162 1-30 (163)
20 PRK09767 hypothetical protein; 25.4 1.5E+02 0.0033 25.1 5.0 39 280-319 74-113 (117)
21 KOG4651 Chondroitin 6-sulfotra 24.3 62 0.0013 32.3 2.7 91 127-236 78-169 (324)
22 cd01862 Rab7 Rab7 subfamily. 23.5 67 0.0015 27.2 2.5 22 132-153 2-24 (172)
23 PHA02819 hypothetical protein; 23.1 85 0.0018 24.5 2.7 26 21-46 43-68 (71)
24 PF00071 Ras: Ras family; Int 22.7 78 0.0017 26.6 2.8 20 133-152 2-22 (162)
25 cd01428 ADK Adenylate kinase ( 22.5 74 0.0016 27.9 2.7 24 133-156 2-25 (194)
26 PF13207 AAA_17: AAA domain; P 22.1 69 0.0015 25.8 2.2 22 133-154 2-23 (121)
27 PHA03054 IMV membrane protein; 22.0 1.1E+02 0.0024 23.9 3.1 24 23-46 47-70 (72)
28 PF06624 RAMP4: Ribosome assoc 21.9 36 0.00079 25.9 0.4 24 18-41 32-55 (63)
29 COG2115 XylA Xylose isomerase 20.8 74 0.0016 32.2 2.4 43 310-352 88-130 (438)
30 cd01895 EngA2 EngA2 subfamily. 20.7 94 0.002 25.9 2.9 22 131-152 3-25 (174)
31 KOG1532 GTPase XAB1, interacts 20.5 60 0.0013 32.3 1.7 24 132-155 21-44 (366)
32 cd01038 Endonuclease_DUF559 Do 20.3 2.3E+02 0.005 23.2 5.0 26 291-316 81-107 (108)
No 1
>PF09037 Sulphotransf: Stf0 sulphotransferase; InterPro: IPR024628 Members of this family are essential for the biosynthesis of sulpholipid-1 in prokaryotes. They adopt a structure that belongs to the sulphotransferase superfamily, consisting of a single domain with a core four-stranded parallel beta-sheet flanked by alpha-helices []. ; PDB: 1TEX_B.
Probab=99.96 E-value=4e-29 Score=236.91 Aligned_cols=204 Identities=25% Similarity=0.294 Sum_probs=116.0
Q ss_pred cEEEEccCCchHHHHHHHHhcCcCCCCCCcccch------------------hhhhcchhhhhhhccc--chhhhccchh
Q 017911 132 YFAIISMQRSGSGWFETLLNSHMNVSSNGEIFST------------------LDTVYNLDLFTSASKN--ECSAAVGFKW 191 (364)
Q Consensus 132 ~F~Ilg~pRSGSTlL~~lLnsHP~V~~~gElf~~------------------ld~~~~~~w~~sa~~~--~~~~a~G~K~ 191 (364)
.|+||++||||||||+++|++|+.+..++|+|+. .|.....+|++.+.+. ....++|+|+
T Consensus 1 ~yii~~t~RSGStlL~~~L~~tg~~G~p~E~F~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~ngv~G~KL 80 (245)
T PF09037_consen 1 SYIICSTQRSGSTLLCELLRATGVAGRPQEFFQSPQPREWFAGVGLPSDPGTPDKEDPDEWLDAALARGRTPNGVFGFKL 80 (245)
T ss_dssp EEEEEE-TTSSHHHHHHHHHHCTSS-----TT----HHHHTTT--------------HHHHHHHHHHHTB-TTS-EEEEE
T ss_pred CeEEEeCCCCcHHHHHHHHHhCcCCCCchHhcCCccHHHHHhhcCCcccccccccccHHHHHHHHHHhcCCCCCeEEEEe
Confidence 3799999999999999999999999999999961 1112234566654333 2246899999
Q ss_pred hcccc-cc--------c----cchHHH-HHhhcCCcEEEEEeccChhHHHHHHHHhhhhHHHHHhcCccccccCChHHHH
Q 017911 192 MLNQG-LM--------Q----YHKEIV-EYFNRRGVSVIFLFRRNLLRRLVSVLANSYDRYAKLLNGTHKSHVHSHQEAE 257 (364)
Q Consensus 192 m~~q~-~~--------~----~~p~~~-~~l~~p~~kiI~L~RRNpLdravS~~~~~~~r~A~~~~g~h~~hv~s~~eA~ 257 (364)
|.+|- .+ . ....++ ++ .+++++|||.|||.|+|+||+++ |+++|.||.... ..+...
T Consensus 81 m~~q~~~~~~~~~~l~~~~~~d~~~~i~~~--~~~~~~I~L~R~d~l~QAvS~~~------A~qtg~w~~~~~-~~~~~r 151 (245)
T PF09037_consen 81 MWNQLPLLIRRLAHLYPGRSSDHLRFIEDL--FGDVKFIHLRRRDLLRQAVSLWR------ARQTGVWHQHAD-GTRDER 151 (245)
T ss_dssp EGGGHHHHHHHHTTS-TT---SSHHHHHHH--HTS-EEEEEE-S-HHHHHHHHHH------HHHHS------------TT
T ss_pred cHhhhHHHHHHHhhhcccccccHHHHHHHH--cCCeEEEEEEeCCHHHHHHHHHH------HHhCCCcccCCC-CCcccc
Confidence 98862 10 0 111133 33 36799999999999999999999 999999986321 111110
Q ss_pred HhhccCCCCChHHHHHHHHHHHHHHHHHHHHc--CCCCeEEEechhhhcCHHH-HHHHHHHhCCCCcCcccccccccccC
Q 017911 258 ALSRYKPAINSTLLIAELKEMELTAAKAFEYF--NSTRHIVLYYEDLVKNRKK-LKEVLEFLRLPQMKLKSRQVKIHRGT 334 (364)
Q Consensus 258 ~La~~kp~~d~~~Li~~l~~~~~~~~~~~~~f--~~~~~l~V~YEDLv~dP~~-l~~Vl~FLGLp~~~l~s~~vKih~~~ 334 (364)
.-...++.+|...+...+.+.++..+.|..+| .+.+++.|.||||++||++ +++|++||||++.... .++.+..+
T Consensus 152 ~~~~~~~~yd~~~i~~~i~~i~~~~~~w~~~f~~~~i~pl~i~YEdL~~dp~~~~~~Vl~fLgv~~~~~~--~~~~~~~k 229 (245)
T PF09037_consen 152 VSPPRKPRYDFEEIAHLIDRIEDQEAFWRNWFARHGIEPLEITYEDLLADPQKTVARVLDFLGVDPPLAP--IVKPPLKK 229 (245)
T ss_dssp ----------HHHHHHHHHHHHHHHHHHHHHHHHTT---EEEEHHHHHHHHHHHHHHHHHHTTS-GGGS-----------
T ss_pred ccccccceeCHHHHHHHHHHHHHHHHHHHHHHHHcCCCeeEEEHHHHHhCHHHHHHHHHHHhCCCCcccc--cCCCCcee
Confidence 00112467888888888888888888888888 4567899999999999999 9999999999887533 34555566
Q ss_pred hhh-hccCHHHHH
Q 017911 335 LSE-HIQNWNDVK 346 (364)
Q Consensus 335 l~~-~V~N~dEv~ 346 (364)
++| +.+||.+-.
T Consensus 230 qsd~~s~eW~~ry 242 (245)
T PF09037_consen 230 QSDERSEEWVERY 242 (245)
T ss_dssp -------HHHHHH
T ss_pred cCCCChHHHHHHH
Confidence 666 567777643
No 2
>COG4424 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.81 E-value=9.9e-20 Score=165.50 Aligned_cols=182 Identities=20% Similarity=0.190 Sum_probs=132.3
Q ss_pred CCcEEEEccCCchHHHHHHHHhcCcCCCCCCcccc-------------hhhh-----hcchhhhhhh--cccchhhhccc
Q 017911 130 VQYFAIISMQRSGSGWFETLLNSHMNVSSNGEIFS-------------TLDT-----VYNLDLFTSA--SKNECSAAVGF 189 (364)
Q Consensus 130 ~~~F~Ilg~pRSGSTlL~~lLnsHP~V~~~gElf~-------------~ld~-----~~~~~w~~sa--~~~~~~~a~G~ 189 (364)
+++++||++||||||||+.+|++..+...+++.|. .+|. .....|+..+ .....+..+|.
T Consensus 5 fr~Ylilt~pRSGStlLckllaatG~sG~p~sff~rp~~sEWla~~~~pld~g~pea~~~va~f~aai~kgstpngvfGl 84 (250)
T COG4424 5 FRPYLILTTPRSGSTLLCKLLAATGCSGEPQSFFQRPQPSEWLAQLLDPLDPGTPEAATPVAWFEAAITKGSTPNGVFGL 84 (250)
T ss_pred ccceeEecCCCCcchHHHHHHHhcCCCCCchhhhcCCCHHHHHHhhccccCCCCcccccHHHHHHHHHHcCCCCCccchh
Confidence 78899999999999999999999988776676665 1111 1123566543 22334568999
Q ss_pred hhhcccc-----ccccch----HHHH-HhhcCCcEEEEEeccChhHHHHHHHHhhhhHHHHHhcCccccccCChHHHHHh
Q 017911 190 KWMLNQG-----LMQYHK----EIVE-YFNRRGVSVIFLFRRNLLRRLVSVLANSYDRYAKLLNGTHKSHVHSHQEAEAL 259 (364)
Q Consensus 190 K~m~~q~-----~~~~~p----~~~~-~l~~p~~kiI~L~RRNpLdravS~~~~~~~r~A~~~~g~h~~hv~s~~eA~~L 259 (364)
|+|.|+. +...+| ++.. ..++.++-+|||.|+|.|+|+||.++ |+|++.||. |+....
T Consensus 85 kLmrn~d~l~q~lav~lp~~ssD~~r~e~afg~~lfvhl~R~dkv~QAvSl~r------A~QTglwha-hpdG~a----- 152 (250)
T COG4424 85 KLMRNQDALLQQLAVQLPDRSSDGLRIEDAFGEPLFVHLHRPDKVSQAVSLWR------AVQTGLWHA-HPDGPA----- 152 (250)
T ss_pred hhccchHHHHHHHHHhCccccchHHHHHHHhCCeeEEEeecchHHHHHHHHHH------HHHhcceec-cCCCCC-----
Confidence 9999842 212222 2222 11357899999999999999999999 999999986 333211
Q ss_pred hccCCCCChHHHHHHHHHHHHHHHHHHHHcC--CCCeEEEechhhhcCHHH-HHHHHHHhCCCCcCc
Q 017911 260 SRYKPAINSTLLIAELKEMELTAAKAFEYFN--STRHIVLYYEDLVKNRKK-LKEVLEFLRLPQMKL 323 (364)
Q Consensus 260 a~~kp~~d~~~Li~~l~~~~~~~~~~~~~f~--~~~~l~V~YEDLv~dP~~-l~~Vl~FLGLp~~~l 323 (364)
-...|.+|.+.+...+++...+.+.|..||. +...+.+.||.|-+||.. +..+++.|||++...
T Consensus 153 p~s~p~Ydfe~Ia~~~~~lrdydaaWn~wfa~qGiep~riaYe~Lsadp~aava~~~ealgv~~p~a 219 (250)
T COG4424 153 PDSQPVYDFEAIAHIIRNLRDYDAAWNAWFAEQGIEPIRIAYEVLSADPTAAVASVLEALGVDPPLA 219 (250)
T ss_pred CccccccCHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHhHHHHccCcHHHHHHHHHHhCCCCCCC
Confidence 0114678888877777666666666777774 567899999999999999 999999999987643
No 3
>PF00685 Sulfotransfer_1: Sulfotransferase domain; InterPro: IPR000863 This family includes a range of sulphotransferase proteins including flavonyl 3-sulphotransferase, aryl sulphotransferase, alcohol sulphotransferase, oestrogen sulphotransferase and phenol-sulphating phenol sulphotransferase. These enzymes are responsible for the transfer of sulphate groups to specific compounds.; GO: 0008146 sulfotransferase activity; PDB: 3MGC_A 3MGB_A 3MG9_A 1G3M_B 1HY3_B 2QP4_A 3F3Y_C 1EFH_A 1OV4_A 1J99_A ....
Probab=99.70 E-value=1.2e-16 Score=148.36 Aligned_cols=174 Identities=21% Similarity=0.308 Sum_probs=93.4
Q ss_pred CcEEEEccCCchHHHHHHHHhcCcCCCCCCcc-----cchhhhhcchhhhhhhccc---ch------h-hhccchhhccc
Q 017911 131 QYFAIISMQRSGSGWFETLLNSHMNVSSNGEI-----FSTLDTVYNLDLFTSASKN---EC------S-AAVGFKWMLNQ 195 (364)
Q Consensus 131 ~~F~Ilg~pRSGSTlL~~lLnsHP~V~~~gEl-----f~~ld~~~~~~w~~sa~~~---~~------~-~a~G~K~m~~q 195 (364)
++++|+|+||||||||.++|++||++....+. ++..+..-.+.|+...... .. . ...+...+...
T Consensus 2 ~~i~I~g~prSGTt~l~~lL~~h~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (267)
T PF00685_consen 2 PPIFIVGAPRSGTTWLRELLNSHPDIFSFSPFKEPHFFNNRDYSPFLEWYRDFFPFRIKPQEHIPSFSHVESKIVRLRDL 81 (267)
T ss_dssp TSEEEEESTTSSHHHHHHHHHHHHTTTETHHHTSSHHTTTHHHSTBTTHHHHTSHEEGTTTEEEGGCTTTETHHHHHHCS
T ss_pred CCEEEECCCCCcHHHHHHHHHhCcccccccccccccccchhhhhhhhhhhhcccccccccccccccccccchhHHHHhhc
Confidence 57899999999999999999999999987211 1110111112232110000 00 0 00000000000
Q ss_pred ---cccccc---hHHHHHhhcCCcEEEEEeccChhHHHHHHHHhhhhHHHHHhcCccccccCC-hHHHHHhhcc-CCCCC
Q 017911 196 ---GLMQYH---KEIVEYFNRRGVSVIFLFRRNLLRRLVSVLANSYDRYAKLLNGTHKSHVHS-HQEAEALSRY-KPAIN 267 (364)
Q Consensus 196 ---~~~~~~---p~~~~~l~~p~~kiI~L~RRNpLdravS~~~~~~~r~A~~~~g~h~~hv~s-~~eA~~La~~-kp~~d 267 (364)
.....| ..+...+..|++|+|+++| ||.++++|.+..... .+..+.. .. .++. +... .....
T Consensus 82 ~~~~~~~~H~~~~~~~~~~~~~~~KiI~ivR-dP~d~~~S~~~~~~~-----~~~~~~~--~~~~~~~--~~~~~~~~~~ 151 (267)
T PF00685_consen 82 PSPRFIKTHLPLDLLPKKLLFPNAKIIYIVR-DPRDVIVSRYKHSWR-----SNPFSDP--GQRFEEF--VDWFLQPRLL 151 (267)
T ss_dssp CSSEEEEE-S-GGGSHHHHHHTTEEEEEEE---HHHHHHHHHHHHHH-----BTTSTTH--HSHHHHH--HHHHHTTHST
T ss_pred cCchhhhhccccccccccccccccccceecc-cccchhHHHHHHHHh-----ccccccc--chhhhhh--hhhhhccccc
Confidence 111111 1122333469999999998 999999999984321 1111100 00 0000 0000 00001
Q ss_pred hHHHHHHHHHHHHHHHHHHHHcCCCCeEEEechhhhcCHHH-HHHHHHHhCCCCc
Q 017911 268 STLLIAELKEMELTAAKAFEYFNSTRHIVLYYEDLVKNRKK-LKEVLEFLRLPQM 321 (364)
Q Consensus 268 ~~~Li~~l~~~~~~~~~~~~~f~~~~~l~V~YEDLv~dP~~-l~~Vl~FLGLp~~ 321 (364)
...+...+..|.+.+...+++.|.||||+.||++ +++|++|||++..
T Consensus 152 -------~~~~~~~~~~~~~~~~~~~~~~i~YEdl~~dp~~~l~~I~~FLgl~~~ 199 (267)
T PF00685_consen 152 -------YGSWADHLKSWLSSFDRDNVLIIRYEDLVADPEKELKRICDFLGLPFS 199 (267)
T ss_dssp -------TSCHHHHHHHHHHHTTTSTEEEEEHHHHHHSHHHHHHHHHHHTTSS--
T ss_pred -------cccccccccchhhhhccchhhhhcchhhhhhhhHHHHHHHHHHhhccc
Confidence 1122344555666778899999999999999999 9999999999944
No 4
>KOG3704 consensus Heparan sulfate D-glucosaminyl 3-O-sulfotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.40 E-value=8.8e-13 Score=125.04 Aligned_cols=178 Identities=17% Similarity=0.208 Sum_probs=121.0
Q ss_pred CCcEEEEccCCchHHHHHHHHhcCcCCCCCCcccchhhhhcc--hhhhhhhcccchhhhccchhhccccccccchHHHHH
Q 017911 130 VQYFAIISMQRSGSGWFETLLNSHMNVSSNGEIFSTLDTVYN--LDLFTSASKNECSAAVGFKWMLNQGLMQYHKEIVEY 207 (364)
Q Consensus 130 ~~~F~Ilg~pRSGSTlL~~lLnsHP~V~~~gElf~~ld~~~~--~~w~~sa~~~~~~~a~G~K~m~~q~~~~~~p~~~~~ 207 (364)
.+.=+|+|.-+.||.-|-++|.-||+|...|.-...+|+.|. ++|+++.-... .-|.-.|-..+.+-..+++.+.
T Consensus 107 lPqalIigvkkggtRalle~l~lhpdVra~~~e~hffD~~y~~gl~wyr~~MP~t---l~~qItmEKTPsYFvt~e~P~R 183 (360)
T KOG3704|consen 107 LPQALIIGVKKGGTRALLEFLRLHPDVRAVGSEPHFFDRNYTRGLDWYRSQMPRT---LDGQITMEKTPSYFVTREVPKR 183 (360)
T ss_pred CChheEEeecccchHHHHHHHhhChhhhhhccCCccccccccccchhHHhcCCcc---cCCceEEecCchhhcccccchH
Confidence 455589999999999999999999999988754455677774 78998643321 1121111111111011223332
Q ss_pred h--hcCCcEEEEEeccChhHHHHHHHHhhhhHHHHHhcCccccccCChHH-HHHhhccCCCCChHHHHHHHHHHHHHHHH
Q 017911 208 F--NRRGVSVIFLFRRNLLRRLVSVLANSYDRYAKLLNGTHKSHVHSHQE-AEALSRYKPAINSTLLIAELKEMELTAAK 284 (364)
Q Consensus 208 l--~~p~~kiI~L~RRNpLdravS~~~~~~~r~A~~~~g~h~~hv~s~~e-A~~La~~kp~~d~~~Li~~l~~~~~~~~~ 284 (364)
+ ..|+.|+|.++| ||+.|+||-|.|-+.+. ... -+.+. |. -.+-...+|..--.-.+.-|..++++
T Consensus 184 v~~M~pd~KLivvvR-~PvtRaiSDyTQt~sk~----~~~-----P~fe~laf-kn~~~g~id~~w~ai~iglY~~Hle~ 252 (360)
T KOG3704|consen 184 VYSMNPDTKLIVVVR-DPVTRAISDYTQTLSKK----PDI-----PTFEVLAF-KNRTAGLIDTSWKAIRIGLYAVHLEN 252 (360)
T ss_pred HHhcCCCceEEEEEc-CchhhhHHHHHHHHhcC----CCC-----Cceeeeee-ecCccceeecchhhhhhhHHHHHHHH
Confidence 2 479999999998 99999999999765321 000 01110 00 00001235555555557778889999
Q ss_pred HHHHcCCCCeEEEechhhhcCHHH-HHHHHHHhCCCCc
Q 017911 285 AFEYFNSTRHIVLYYEDLVKNRKK-LKEVLEFLRLPQM 321 (364)
Q Consensus 285 ~~~~f~~~~~l~V~YEDLv~dP~~-l~~Vl~FLGLp~~ 321 (364)
|++||+-.++++|+-|.|+.||.. +.+|++||||...
T Consensus 253 WL~yFpL~q~lfVsGerli~dPa~E~~rVqdFLgLkr~ 290 (360)
T KOG3704|consen 253 WLRYFPLRQILFVSGERLISDPAGELGRVQDFLGLKRV 290 (360)
T ss_pred HHHhCchhheEEecCceeecCcHHHHHHHHHHhcccce
Confidence 999999899999999999999999 9999999999874
No 5
>PLN02164 sulfotransferase
Probab=99.38 E-value=1.8e-12 Score=128.85 Aligned_cols=102 Identities=14% Similarity=0.223 Sum_probs=61.7
Q ss_pred HHHhhcCCcEEEEEeccChhHHHHHHHHhhhhHHHHHhcCccccccCChHHHHHhhcc-CCCCChHHHHHHHHHHHHHHH
Q 017911 205 VEYFNRRGVSVIFLFRRNLLRRLVSVLANSYDRYAKLLNGTHKSHVHSHQEAEALSRY-KPAINSTLLIAELKEMELTAA 283 (364)
Q Consensus 205 ~~~l~~p~~kiI~L~RRNpLdravS~~~~~~~r~A~~~~g~h~~hv~s~~eA~~La~~-kp~~d~~~Li~~l~~~~~~~~ 283 (364)
...+..+++|+||+.| ||.|++||.|..... .....+. ..+.+++. ..+ ..... +..+-++..
T Consensus 158 P~~i~~~~~KiIyv~R-nPkDv~VS~yhf~~~--~~~~~~~----~~s~ee~~--e~f~~g~~~-------~G~y~dHv~ 221 (346)
T PLN02164 158 PDSVVKSGCKMVYIWR-DPKDTFISMWTFLHK--ERSQQGP----LNSLEESF--DMFCRGLSV-------YGPYLDHVL 221 (346)
T ss_pred ccccccCCceEEEEec-CchhheeeHHHHHhh--ccccCCC----CCCHHHHH--HHHHcCCCC-------CCcHHHHHH
Confidence 3444468999999998 999999999863210 0000000 01223221 000 00000 112223333
Q ss_pred HHHHHc--CCCCeEEEechhhhcCHHH-HHHHHHHhCCCCcC
Q 017911 284 KAFEYF--NSTRHIVLYYEDLVKNRKK-LKEVLEFLRLPQMK 322 (364)
Q Consensus 284 ~~~~~f--~~~~~l~V~YEDLv~dP~~-l~~Vl~FLGLp~~~ 322 (364)
.|.+.+ .+.+++.|.||||.+||.. +++|++|||+|..+
T Consensus 222 ~yw~~~~~~p~~VLfl~YEDmk~D~~~~v~ria~FLG~~~s~ 263 (346)
T PLN02164 222 GYWKAYQENPDRILFLKYETMRADPLPYVKRLAEFMGYGFTA 263 (346)
T ss_pred HHHHHhhcCCccEEEEEHHHHHHhHHHHHHHHHHHhCCCCch
Confidence 333334 4568999999999999999 99999999998764
No 6
>KOG3988 consensus Protein-tyrosine sulfotransferase TPST1/TPST2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=7.9e-12 Score=119.25 Aligned_cols=165 Identities=18% Similarity=0.311 Sum_probs=100.3
Q ss_pred CCcEEEEccCCchHHHHHHHHhcCcCCCCCCcccc-----hhhhhc---chhhhhh--hc-ccc----hhhhccchhhcc
Q 017911 130 VQYFAIISMQRSGSGWFETLLNSHMNVSSNGEIFS-----TLDTVY---NLDLFTS--AS-KNE----CSAAVGFKWMLN 194 (364)
Q Consensus 130 ~~~F~Ilg~pRSGSTlL~~lLnsHP~V~~~gElf~-----~ld~~~---~~~w~~s--a~-~~~----~~~a~G~K~m~~ 194 (364)
.+-+||=|.||||||+++.||.+||+|.+.+|--. ++...| +.+|++- |. ..+ ...++=..++..
T Consensus 70 mplIFiGGVPRSGTTLMRAmLDAHPdVRCGeETrviPriL~lr~~W~ks~ke~~rl~eaGvT~EV~d~AisaFilEIiak 149 (378)
T KOG3988|consen 70 MPLIFIGGVPRSGTTLMRAMLDAHPDVRCGEETRVIPRILALRSGWSKSEKEWLRLQEAGVTDEVLDSAISAFILEIIAK 149 (378)
T ss_pred CceEEEcCCCCCchHHHHHHHhcCCCcccCccceehHHHHHHHHHhhhhhHhHhhhhhccchHHHHHHHHHHHHHHHHHh
Confidence 35578889999999999999999999999998533 344444 1345531 10 000 011111122222
Q ss_pred cc-----ccccchHH---HHHhh--cCCcEEEEEeccChhHHHHHHHHhhhhHHHHHhcCccccccCChHHHHHhhccCC
Q 017911 195 QG-----LMQYHKEI---VEYFN--RRGVSVIFLFRRNLLRRLVSVLANSYDRYAKLLNGTHKSHVHSHQEAEALSRYKP 264 (364)
Q Consensus 195 q~-----~~~~~p~~---~~~l~--~p~~kiI~L~RRNpLdravS~~~~~~~r~A~~~~g~h~~hv~s~~eA~~La~~kp 264 (364)
+| +-.+.|-- .-|+. +|++|+++++| |-....=|+.. .|- +. +
T Consensus 150 Hge~AprLCNKDPftlk~~~yl~rLfPNAKfllMvR-DgRAtVhSmIs------RKV---tI-------------a---- 202 (378)
T KOG3988|consen 150 HGEPAPRLCNKDPFTLKSLVYLSRLFPNAKFLLMVR-DGRATVHSMIS------RKV---TI-------------A---- 202 (378)
T ss_pred cCCcccccccCCchHHHHHHHHHHHCCCceEEEEEe-cchHHHHHHHh------ccc---ee-------------c----
Confidence 21 00111211 12443 79999999998 88777777765 111 10 0
Q ss_pred CCChHHHHHH----HHHHHHHHHHHHHHcCCCCeEEEechhhhcCHHH-HHHHHHHhCCCCcC
Q 017911 265 AINSTLLIAE----LKEMELTAAKAFEYFNSTRHIVLYYEDLVKNRKK-LKEVLEFLRLPQMK 322 (364)
Q Consensus 265 ~~d~~~Li~~----l~~~~~~~~~~~~~f~~~~~l~V~YEDLv~dP~~-l~~Vl~FLGLp~~~ 322 (364)
.+|+.+.... -+.++.+..++++ .+..+.+-|+||.||..|+. +++|++||++||.+
T Consensus 203 Gfdlssyr~c~tkWN~aie~M~~QC~~-vg~~~Cl~VyYEqLVlhPe~~mr~Il~FLdipw~d 264 (378)
T KOG3988|consen 203 GFDLSSYRQCMTKWNQAIEVMYFQCME-VGKKKCLKVYYEQLVLHPEEWMRRILKFLDIPWSD 264 (378)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHh-ccccchhHHHHHHHHhCHHHHHHHHHHHhCCCcHH
Confidence 1233222222 2233444455555 45679999999999999999 99999999999974
No 7
>KOG3703 consensus Heparan sulfate N-deacetylase/N-sulfotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.30 E-value=1.6e-11 Score=125.44 Aligned_cols=185 Identities=15% Similarity=0.146 Sum_probs=113.4
Q ss_pred cccCCCCCCcEEEEccCCchHHHHHHHHhcCcCCCCCCcccchhh-------hhc--chhhhhhhcccchhhhccchhhc
Q 017911 123 TECAHNPVQYFAIISMQRSGSGWFETLLNSHMNVSSNGEIFSTLD-------TVY--NLDLFTSASKNECSAAVGFKWML 193 (364)
Q Consensus 123 ~e~~~~p~~~F~Ilg~pRSGSTlL~~lLnsHP~V~~~gElf~~ld-------~~~--~~~w~~sa~~~~~~~a~G~K~m~ 193 (364)
.|-.|+-.+.|+|+|.||||||.|...|.-||+|.++-....+++ ..| ..|||.+-.+-. ...+...|-
T Consensus 588 kektCd~lPkfLiIGPQKTGtTAly~FLsmHp~i~sn~psp~tFEEvQFFng~NY~kGidWYMdfFP~p--sn~~tdf~F 665 (873)
T KOG3703|consen 588 KEKTCDRLPKFLIIGPQKTGTTALYLFLSMHPSISSNTPSPETFEEVQFFNGNNYHKGIDWYMDFFPVP--SNTTTDFLF 665 (873)
T ss_pred cccCcccccceEEEcCcccchhHHHHHHhhCcchhcCCCCCCchhheeeccCCccccchhhHHhcCCCC--ccccchhee
Confidence 444666788999999999999999999999999998843322222 122 368887522100 001111111
Q ss_pred cc--cccccchHHHHHh--hcCCcEEEEEeccChhHHHHHHHHhhhhH---HHHHhcCccccccCChHHHHHhhccCCCC
Q 017911 194 NQ--GLMQYHKEIVEYF--NRRGVSVIFLFRRNLLRRLVSVLANSYDR---YAKLLNGTHKSHVHSHQEAEALSRYKPAI 266 (364)
Q Consensus 194 ~q--~~~~~~p~~~~~l--~~p~~kiI~L~RRNpLdravS~~~~~~~r---~A~~~~g~h~~hv~s~~eA~~La~~kp~~ 266 (364)
.+ .+++ .+...... -.|.+|||.+.- ||.+||.|.|++.... .|-..+- ..|.+ +......
T Consensus 666 EKSAtYFd-se~aPkraasLvP~AKIvtILi-nPadRAYSWyQHqraH~DpvAl~~~f---yeVIs-------as~~aps 733 (873)
T KOG3703|consen 666 EKSATYFD-SEVAPKRAASLVPHAKIVTILI-NPADRAYSWYQHQRAHEDPVALNYSF---YEVIS-------ASSSAPS 733 (873)
T ss_pred eccccccC-CcccchhhhhhCCcceEEEEEe-ChHHhhhHHHHHHhhcCCcceeccee---EEEEe-------cCCCCcH
Confidence 11 1111 12222111 159999999987 9999999999964311 1100000 00000 0000011
Q ss_pred ChHHHHHH---HHHHHHHHHHHHHHcCCCCeEEEechhhhcCHHH-HHHHHHHhCCCCc
Q 017911 267 NSTLLIAE---LKEMELTAAKAFEYFNSTRHIVLYYEDLVKNRKK-LKEVLEFLRLPQM 321 (364)
Q Consensus 267 d~~~Li~~---l~~~~~~~~~~~~~f~~~~~l~V~YEDLv~dP~~-l~~Vl~FLGLp~~ 321 (364)
++..+-.. -..|..+.++|+.||+..+.++|.-++|-.||.+ ++.|++|||+-|.
T Consensus 734 ~lk~lq~RClvpG~Ya~HlerWL~y~~~~QlliiDg~qLr~~Pa~vm~~~qkfLgv~p~ 792 (873)
T KOG3703|consen 734 ALKALQNRCLVPGWYATHLERWLTYFPAQQLLIIDGQQLRTNPATVMNELQKFLGVTPE 792 (873)
T ss_pred HHHHHHHhccCcchHHHHHHHHHHhCCcccEEEEccHHhccCcHHHHHHHHHHhCCCCC
Confidence 11222111 2356788999999999999999999999999999 9999999999553
No 8
>KOG1584 consensus Sulfotransferase [General function prediction only]
Probab=99.30 E-value=1.2e-11 Score=119.66 Aligned_cols=96 Identities=23% Similarity=0.277 Sum_probs=61.9
Q ss_pred HHHHhhcCCcEEEEEeccChhHHHHHHHHhhhhHHHHHhcCccccccCChHHHHHhhccCCCCChHHHHHHHH----HHH
Q 017911 204 IVEYFNRRGVSVIFLFRRNLLRRLVSVLANSYDRYAKLLNGTHKSHVHSHQEAEALSRYKPAINSTLLIAELK----EME 279 (364)
Q Consensus 204 ~~~~l~~p~~kiI~L~RRNpLdravS~~~~~~~r~A~~~~g~h~~hv~s~~eA~~La~~kp~~d~~~Li~~l~----~~~ 279 (364)
+.+.+...++||||+.| ||-|.+||.|.-. +.++..++. .+.+ +....+- .+.
T Consensus 116 Lp~s~~~~~cKvVYv~R-NpKD~~VSy~hf~--~~~~~~~~~-----~~~e---------------~~fe~F~~G~~~~G 172 (297)
T KOG1584|consen 116 LPESLKESKCKVVYVCR-NPKDVLVSYYHFN--RMLKTQPGP-----GTFE---------------EFFESFCNGVVPYG 172 (297)
T ss_pred cchhhhcCCCcEEEEec-CccceeeeHHHHH--hhhccCCCC-----CcHH---------------HHHHHHhCCcCCcC
Confidence 33555678999999998 9999999999732 222111110 1112 2211110 011
Q ss_pred HHHHH---HHHHcCCCCeEEEechhhhcCHHH-HHHHHHHhCCCCcC
Q 017911 280 LTAAK---AFEYFNSTRHIVLYYEDLVKNRKK-LKEVLEFLRLPQMK 322 (364)
Q Consensus 280 ~~~~~---~~~~f~~~~~l~V~YEDLv~dP~~-l~~Vl~FLGLp~~~ 322 (364)
..+++ |-+.-.+.++|.+.||||.+||.. +++|++|||.++.+
T Consensus 173 p~~dHVl~~W~~~~~~~VLFl~YEdmk~dp~~~ikrlaeFLg~~~~~ 219 (297)
T KOG1584|consen 173 PWWDHVLGYWELEDPKNVLFLKYEDMKADPKGEIKKLAEFLGCPFTK 219 (297)
T ss_pred ChHHHHHHHHHhcCCCceEEEEHHHhhhCHHHHHHHHHHHhCCCCCH
Confidence 12222 222335789999999999999999 99999999999863
No 9
>PF13469 Sulfotransfer_3: Sulfotransferase family; PDB: 3AP1_B 3AP3_B 3AP2_B 3RNL_A 2Z6V_A 2ZQ5_A.
Probab=99.30 E-value=1.8e-11 Score=107.90 Aligned_cols=33 Identities=27% Similarity=0.319 Sum_probs=29.3
Q ss_pred CcEEEEccCCchHHHHH-HHHhcCcCCCCCCccc
Q 017911 131 QYFAIISMQRSGSGWFE-TLLNSHMNVSSNGEIF 163 (364)
Q Consensus 131 ~~F~Ilg~pRSGSTlL~-~lLnsHP~V~~~gElf 163 (364)
+++||+|+||||||+|. .+|++||++...+|..
T Consensus 1 ~pvfI~G~~RSGTTlL~~~Ll~~~~~~~~~~~~~ 34 (215)
T PF13469_consen 1 RPVFIVGMPRSGTTLLSRRLLSQHPQIWGVHEPQ 34 (215)
T ss_dssp SCEEEECSTTSSHHHHH-HHHCTSTTEECGCHHC
T ss_pred CeEEEECCCCCcHHHHHHHHHccCCCeeecCCcc
Confidence 46799999999999999 9999999988777654
No 10
>COG3551 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.49 E-value=0.28 Score=48.35 Aligned_cols=79 Identities=11% Similarity=0.013 Sum_probs=49.2
Q ss_pred CCcEEEEEeccChhHHHHHHHHhhhhHHHHHhcCccccccCChHHHHHhhccCCCCChHHHHHHHHHHHHHHHHHHHHcC
Q 017911 211 RGVSVIFLFRRNLLRRLVSVLANSYDRYAKLLNGTHKSHVHSHQEAEALSRYKPAINSTLLIAELKEMELTAAKAFEYFN 290 (364)
Q Consensus 211 p~~kiI~L~RRNpLdravS~~~~~~~r~A~~~~g~h~~hv~s~~eA~~La~~kp~~d~~~Li~~l~~~~~~~~~~~~~f~ 290 (364)
..+-+|.+-||||+..+-|..++..- + -| +.++-.+....+.+ .|.++
T Consensus 132 ~~~~~~iv~~r~plsVA~sl~rrD~~---------------~-le-------------ksliLw~~h~~~~~-~~~~h-- 179 (402)
T COG3551 132 ADITYIIVHRRIPLSVASSLRRRDMT---------------E-LE-------------KSLILWPYHGNKQR-IREQH-- 179 (402)
T ss_pred ccceeEEeecCCcHHHHHHHHhhhhh---------------h-ch-------------HHHHHHHHhhHHHH-HHHHh--
Confidence 56667777788999999999773210 0 01 12222222222221 12222
Q ss_pred CCCeEEEechhhhcCHHH-HHHHHHHhCCCCcC
Q 017911 291 STRHIVLYYEDLVKNRKK-LKEVLEFLRLPQMK 322 (364)
Q Consensus 291 ~~~~l~V~YEDLv~dP~~-l~~Vl~FLGLp~~~ 322 (364)
..-..+.||-++.|+.+ +.++.+-+|++..+
T Consensus 180 -~~~~~~~yd~~l~d~rqh~dr~~~~~~~~v~~ 211 (402)
T COG3551 180 -VEEGADIYDVHLSDLRQHPDRLVAAVNQRVGR 211 (402)
T ss_pred -ccchhhhHHHHHhhHHhChHHHHHHhcCcCCc
Confidence 23456889999999999 99999999996544
No 11
>PF06990 Gal-3-0_sulfotr: Galactose-3-O-sulfotransferase ; InterPro: IPR009729 This family consists of several mammalian galactose-3-O-sulphotransferase proteins. Gal-3-O-sulphotransferase is thought to play a critical role in 3'-sulphation of N-acetyllactosamine in both O- and N-glycans [].; GO: 0001733 galactosylceramide sulfotransferase activity, 0009058 biosynthetic process, 0005794 Golgi apparatus, 0016021 integral to membrane
Probab=91.63 E-value=1.4 Score=45.28 Aligned_cols=99 Identities=13% Similarity=0.254 Sum_probs=53.9
Q ss_pred CCCCCCcEEEEccCCchHHHHHHHHhcCcC-----CC-CCC--cccchhhhhcchhhhhhhcccchhhhccchhhccccc
Q 017911 126 AHNPVQYFAIISMQRSGSGWFETLLNSHMN-----VS-SNG--EIFSTLDTVYNLDLFTSASKNECSAAVGFKWMLNQGL 197 (364)
Q Consensus 126 ~~~p~~~F~Ilg~pRSGSTlL~~lLnsHP~-----V~-~~g--Elf~~ld~~~~~~w~~sa~~~~~~~a~G~K~m~~q~~ 197 (364)
.|.|.++|+-+=+-|||||.+.++|..... +. ..+ -.+. +...++..+.. . ......+.++.+ +
T Consensus 62 ~C~P~~nIvFlKTHKTgSSTv~nIL~Rfg~~~nL~~alP~~~~~~~~-~P~~f~~~~v~----~-~~~~~~~nIl~~--H 133 (402)
T PF06990_consen 62 SCQPKTNIVFLKTHKTGSSTVQNILFRFGEKHNLTFALPRGGRNQFG-YPAPFNARFVE----G-YPPGGRFNILCH--H 133 (402)
T ss_pred cccccceEEEEecCCcccHHHHHHHHHHHHHcCCEEecCCCCCCCCC-CCCcCCccccc----c-CCCCCCceEEee--h
Confidence 899999999999999999999999976211 00 000 0010 00001111110 0 000012223332 2
Q ss_pred cccchHHHHHhhcCCcEEEEEeccChhHHHHHHHHh
Q 017911 198 MQYHKEIVEYFNRRGVSVIFLFRRNLLRRLVSVLAN 233 (364)
Q Consensus 198 ~~~~p~~~~~l~~p~~kiI~L~RRNpLdravS~~~~ 233 (364)
+..+...++-+.-++++.|-++| ||+.++.|.+.-
T Consensus 134 ~rfn~~~~~~lmP~dt~yiTILR-dP~~~feS~f~Y 168 (402)
T PF06990_consen 134 MRFNRPEVRKLMPPDTKYITILR-DPVSHFESSFNY 168 (402)
T ss_pred hccCHHHHHHhCCCCCeEEEEEc-CHHHHHHhHHHH
Confidence 22222223222235799999888 999999999873
No 12
>PF03567 Sulfotransfer_2: Sulfotransferase family; InterPro: IPR005331 This entry consists of a number of carbohydrate sulphotransferases that transfer sulphate to carbohydrate groups in glycoproteins and glycolipids. These include: Carbohydrate sulphotransferases 8 and 9, which transfer sulphate to position 4 of non-reducing N-acetylgalactosamine (GalNAc) residues in both N-glycans and O-glycans []. They function in the biosynthesis of glycoprotein hormones lutropin and thyrotropin, by mediating sulphation of their carbohydrate structures. Carbohydrate sulphotransferase 10, which transfers sulphate to position 3 of the terminal glucuronic acid in both protein- and lipid-linked oligosaccharides []. It directs the biosynthesis of the HNK-1 carbohydrate structure, a sulphated glucuronyl-lactosaminyl residue carried by many neural recognition molecules, which is involved in cell interactions during ontogenetic development and in synaptic plasticity in the adult. Carbohydrate sulphotransferases 11 - 13, which catalyze the transfer of sulphate to position 4 of the GalNAc residue of chondroitin []. Chondroitin sulphate constitutes the predominant proteoglycan present in cartilage and is distributed on the surfaces of many cells and extracellular matrices. Some, thought not all, of these enzymes also transfer sulphate to dermatan. Carbohydrate sulphotransferase D4ST1, which transfers sulphate to position 4 of the GalNAc residue of dermatan sulphate []. Heparan sulphate 2-O-sulphotransferase (HS2ST). Heparan sulphate (HS) is a co-receptor for a number of growth factors, morphogens, and adhesion proteins. HS biosynthetic modifications may determine the strength and outcome of HS-ligand interactions. Mice that lack HS2ST undergo developmental failure only after midgestation,the most dramatic effect being the complete failure of kidney development []. Heparan-sulphate 6-O-sulphotransferase (HS6ST), which catalyses the transfer of sulphate from adenosine 3'-phosphate, 5'-phosphosulphate to the 6th position of the N -sulphoglucosamine residue in heparan sulphate []. Chondroitin 6-sulphotransferase catalyses the transfer of sulphate to position 6 of the N-acetylgalactosamine residue of chondroitin []. ; GO: 0008146 sulfotransferase activity, 0016021 integral to membrane; PDB: 3F5F_A.
Probab=89.60 E-value=0.59 Score=42.58 Aligned_cols=27 Identities=11% Similarity=0.297 Sum_probs=18.6
Q ss_pred CCCcEEEEccCCchHHHHHHHHhcCcC
Q 017911 129 PVQYFAIISMQRSGSGWFETLLNSHMN 155 (364)
Q Consensus 129 p~~~F~Ilg~pRSGSTlL~~lLnsHP~ 155 (364)
|-..++.+-.||||+|.+..+|..+-.
T Consensus 7 ~~~~i~f~~ipK~g~Ts~~~~l~~~~~ 33 (253)
T PF03567_consen 7 PKHKIIFCHIPKTGGTSLKSILRRLYG 33 (253)
T ss_dssp S--EEEE---SSSSHHHHHHHHHHHHH
T ss_pred CCCcEEEEecCCHHHHHHHHHHHHHhh
Confidence 456788999999999999999987544
No 13
>KOG3922 consensus Sulfotransferases [Posttranslational modification, protein turnover, chaperones]
Probab=83.93 E-value=2.6 Score=41.74 Aligned_cols=35 Identities=17% Similarity=0.173 Sum_probs=23.2
Q ss_pred cccchHHHHHhh--cCCcEEEEEeccChhHHHHHHHHh
Q 017911 198 MQYHKEIVEYFN--RRGVSVIFLFRRNLLRRLVSVLAN 233 (364)
Q Consensus 198 ~~~~p~~~~~l~--~p~~kiI~L~RRNpLdravS~~~~ 233 (364)
+..|-.++++-+ .+..=.|.++| +|++|++|.|--
T Consensus 144 yhgHV~FldFskFgi~~PIYINvIR-dPveRllS~yyf 180 (361)
T KOG3922|consen 144 YHGHVAFLDFSKFGIARPIYINVIR-DPVERLLSYYYF 180 (361)
T ss_pred eeeeeeeeehhhhCCCCceEEeeec-cHHHHHHhHhhh
Confidence 333444554433 34455777888 999999999874
No 14
>KOG3491 consensus Predicted membrane protein [Function unknown]
Probab=64.29 E-value=5.7 Score=29.88 Aligned_cols=28 Identities=39% Similarity=0.554 Sum_probs=24.2
Q ss_pred cCCCCCchHHHHHHHHHHHHHHhhhhhe
Q 017911 16 KPSKKSPLLLRLIALLFAVVCGVFFCSI 43 (364)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 43 (364)
|+-||.|.-.|++-||+.+|||--++-|
T Consensus 30 ~~e~kypvgPwLlglFvFVVcGSa~FqI 57 (65)
T KOG3491|consen 30 KKEKKYPVGPWLLGLFVFVVCGSALFQI 57 (65)
T ss_pred CccccCCcchHHHHHHHHHhhcHHHHHH
Confidence 7788999999999999999999776644
No 15
>PHA02975 hypothetical protein; Provisional
Probab=37.88 E-value=27 Score=27.06 Aligned_cols=29 Identities=34% Similarity=0.510 Sum_probs=19.5
Q ss_pred CCCCchHHHHHHHHHHHHHHhhhhheecc
Q 017911 18 SKKSPLLLRLIALLFAVVCGVFFCSIRLK 46 (364)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 46 (364)
.|++..-..+++++++++|.+++|..-+|
T Consensus 38 ~~~~~~~~~~ii~i~~v~~~~~~~flYLK 66 (69)
T PHA02975 38 KKKSSLSIILIIFIIFITCIAVFTFLYLK 66 (69)
T ss_pred CcCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555566667778899888876655
No 16
>PHA02692 hypothetical protein; Provisional
Probab=33.79 E-value=48 Score=25.81 Aligned_cols=29 Identities=34% Similarity=0.433 Sum_probs=17.3
Q ss_pred CCCCchHHHHHHHHHHHHHHhhhhheecc
Q 017911 18 SKKSPLLLRLIALLFAVVCGVFFCSIRLK 46 (364)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 46 (364)
+|.++-.+.+++.+++++|.+.+|..-+|
T Consensus 40 ~~~~~~~~~ii~~~~~~~~~vll~flYLK 68 (70)
T PHA02692 40 SKGVPWTTVFLIGLIAAAIGVLLCFHYLK 68 (70)
T ss_pred cCCcchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333333334435777889888876655
No 17
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=33.67 E-value=30 Score=28.79 Aligned_cols=24 Identities=21% Similarity=0.299 Sum_probs=20.3
Q ss_pred EEEEc-cCCchHHHHHHHHhcCcCCC
Q 017911 133 FAIIS-MQRSGSGWFETLLNSHMNVS 157 (364)
Q Consensus 133 F~Ilg-~pRSGSTlL~~lLnsHP~V~ 157 (364)
+.|+| ++-+|+.+++.+++ ||.+.
T Consensus 2 V~IvGAtG~vG~~l~~lL~~-hp~~e 26 (121)
T PF01118_consen 2 VAIVGATGYVGRELLRLLAE-HPDFE 26 (121)
T ss_dssp EEEESTTSHHHHHHHHHHHH-TSTEE
T ss_pred EEEECCCCHHHHHHHHHHhc-CCCcc
Confidence 57899 99999999877777 99854
No 18
>PHA02844 putative transmembrane protein; Provisional
Probab=32.55 E-value=48 Score=26.13 Aligned_cols=36 Identities=22% Similarity=0.150 Sum_probs=21.2
Q ss_pred ccccccCCCCCchHHHHHHHHHHHHHHhhhhheeccc
Q 017911 11 DTLIIKPSKKSPLLLRLIALLFAVVCGVFFCSIRLKQ 47 (364)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 47 (364)
+++..|..|.++ -+.+++++++++|.+++|..-+|-
T Consensus 36 ~s~~~~~~~~~~-~~~~ii~i~~v~~~~~~~flYLK~ 71 (75)
T PHA02844 36 DGVNKNNVCSSS-TKIWILTIIFVVFATFLTFLYLKA 71 (75)
T ss_pred CCccccccCChh-HHHHHHHHHHHHHHHHHHHHHHhe
Confidence 333333344443 333445577788999888877653
No 19
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=28.45 E-value=37 Score=29.42 Aligned_cols=30 Identities=13% Similarity=0.047 Sum_probs=20.7
Q ss_pred cEEEEccCCchHHHHHHHHhcCcCCCCCCcc
Q 017911 132 YFAIISMQRSGSGWFETLLNSHMNVSSNGEI 162 (364)
Q Consensus 132 ~F~Ilg~pRSGSTlL~~lLnsHP~V~~~gEl 162 (364)
.++|.|.+-||=|.|.+.|.+| ++..-+|.
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~-g~~~v~E~ 30 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR-GYPVVPEY 30 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH-T-EEE--T
T ss_pred CEEEECCCCCCHHHHHHHHHHc-CCeEEeec
Confidence 3789999999999999999999 55544554
No 20
>PRK09767 hypothetical protein; Provisional
Probab=25.35 E-value=1.5e+02 Score=25.12 Aligned_cols=39 Identities=13% Similarity=0.121 Sum_probs=31.1
Q ss_pred HHHHHHHHHcCCCCeEEEechhhhcCHHH-HHHHHHHhCCC
Q 017911 280 LTAAKAFEYFNSTRHIVLYYEDLVKNRKK-LKEVLEFLRLP 319 (364)
Q Consensus 280 ~~~~~~~~~f~~~~~l~V~YEDLv~dP~~-l~~Vl~FLGLp 319 (364)
...+.|++. .+-.++.+..+|+..|++. +..|.+.|+-.
T Consensus 74 ~~R~~~L~~-~G~~VlRf~n~dV~~~~~~Vl~~I~~~l~~~ 113 (117)
T PRK09767 74 TRRTSWLES-QGWTVLRFWNNEIDCNEEAVLEIILQELNRR 113 (117)
T ss_pred HHHHHHHHH-CCCEEEEEEHHHHHhCHHHHHHHHHHHHhcc
Confidence 344556553 3779999999999999999 99999998754
No 21
>KOG4651 consensus Chondroitin 6-sulfotransferase and related sulfotransferases [Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=24.33 E-value=62 Score=32.35 Aligned_cols=91 Identities=16% Similarity=0.204 Sum_probs=49.0
Q ss_pred CCCCCcEEEEccCCchHHHHHHHHhcCcCCCCCCcccchhhhhcchhhhhhhcccchhhhccchhhccccccccchHHHH
Q 017911 127 HNPVQYFAIISMQRSGSGWFETLLNSHMNVSSNGEIFSTLDTVYNLDLFTSASKNECSAAVGFKWMLNQGLMQYHKEIVE 206 (364)
Q Consensus 127 ~~p~~~F~Ilg~pRSGSTlL~~lLnsHP~V~~~gElf~~ld~~~~~~w~~sa~~~~~~~a~G~K~m~~q~~~~~~p~~~~ 206 (364)
-.|.-.++.|+.|+|+||+...++.---+ ...|..-.+..+..|..+ ..|... . ..-..|...
T Consensus 78 vapk~kl~~C~I~Ksms~l~~nimc~L~n----~~~y~~~~~~~~~~w~~~---~~c~~~---~------~~f~~~~~~- 140 (324)
T KOG4651|consen 78 VAPKYKLIYCEIPKSMSTLWTNIMCLLYN----ETQYTADNRSLSDTWHTS---RSCEKE---D------KSFMNPSIL- 140 (324)
T ss_pred eCCCCceEEEeecccHhhhhhhhheeEeC----hhhhccccccchHHHhhc---cccccc---h------hhccCHHHH-
Confidence 56777889999999999999888743111 111110011122345432 112110 0 000113222
Q ss_pred HhhcC-CcEEEEEeccChhHHHHHHHHhhhh
Q 017911 207 YFNRR-GVSVIFLFRRNLLRRLVSVLANSYD 236 (364)
Q Consensus 207 ~l~~p-~~kiI~L~RRNpLdravS~~~~~~~ 236 (364)
..+.. =+|++++ | ||++|.||.|.+.+-
T Consensus 141 ~~~~~~~~kfaFI-R-DP~eRFVS~y~dKcv 169 (324)
T KOG4651|consen 141 LKNLKDTVKFAFI-R-DPFERFVSAYLDKCV 169 (324)
T ss_pred hhcccCeEEEEEe-c-CcHHHHHHHHHHHHh
Confidence 12233 4566666 7 999999999997653
No 22
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=23.53 E-value=67 Score=27.17 Aligned_cols=22 Identities=14% Similarity=0.247 Sum_probs=17.2
Q ss_pred cEEEEccCCch-HHHHHHHHhcC
Q 017911 132 YFAIISMQRSG-SGWFETLLNSH 153 (364)
Q Consensus 132 ~F~Ilg~pRSG-STlL~~lLnsH 153 (364)
.++|+|.+-+| ||++.++++..
T Consensus 2 ki~viG~~~~GKSsl~~~l~~~~ 24 (172)
T cd01862 2 KVIILGDSGVGKTSLMNQYVNKK 24 (172)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 46899999999 66677777653
No 23
>PHA02819 hypothetical protein; Provisional
Probab=23.09 E-value=85 Score=24.51 Aligned_cols=26 Identities=35% Similarity=0.295 Sum_probs=17.3
Q ss_pred CchHHHHHHHHHHHHHHhhhhheecc
Q 017911 21 SPLLLRLIALLFAVVCGVFFCSIRLK 46 (364)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 46 (364)
+-....+++++++++|.+++|..-+|
T Consensus 43 ~~~~~~~ii~l~~~~~~~~~~flYLK 68 (71)
T PHA02819 43 SFLRYYLIIGLVTIVFVIIFIIFYLK 68 (71)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455557778888888877665
No 24
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=22.71 E-value=78 Score=26.59 Aligned_cols=20 Identities=15% Similarity=0.391 Sum_probs=16.0
Q ss_pred EEEEccCCch-HHHHHHHHhc
Q 017911 133 FAIISMQRSG-SGWFETLLNS 152 (364)
Q Consensus 133 F~Ilg~pRSG-STlL~~lLns 152 (364)
++++|.+.+| ||++.++.+.
T Consensus 2 i~vvG~~~vGKtsl~~~~~~~ 22 (162)
T PF00071_consen 2 IVVVGDSGVGKTSLINRLING 22 (162)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhh
Confidence 6899999999 6677676654
No 25
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=22.52 E-value=74 Score=27.94 Aligned_cols=24 Identities=17% Similarity=0.220 Sum_probs=21.4
Q ss_pred EEEEccCCchHHHHHHHHhcCcCC
Q 017911 133 FAIISMQRSGSGWFETLLNSHMNV 156 (364)
Q Consensus 133 F~Ilg~pRSGSTlL~~lLnsHP~V 156 (364)
++|+|.|-||-|.+...|+++.++
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~ 25 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGL 25 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCC
Confidence 689999999999999999988553
No 26
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=22.08 E-value=69 Score=25.82 Aligned_cols=22 Identities=18% Similarity=0.178 Sum_probs=19.8
Q ss_pred EEEEccCCchHHHHHHHHhcCc
Q 017911 133 FAIISMQRSGSGWFETLLNSHM 154 (364)
Q Consensus 133 F~Ilg~pRSGSTlL~~lLnsHP 154 (364)
++|.|.|-||=|.+...|+.+=
T Consensus 2 I~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999998863
No 27
>PHA03054 IMV membrane protein; Provisional
Probab=22.05 E-value=1.1e+02 Score=23.91 Aligned_cols=24 Identities=25% Similarity=0.310 Sum_probs=16.0
Q ss_pred hHHHHHHHHHHHHHHhhhhheecc
Q 017911 23 LLLRLIALLFAVVCGVFFCSIRLK 46 (364)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~ 46 (364)
....+++++++++|.+++|..-+|
T Consensus 47 ~~~~~ii~l~~v~~~~l~~flYLK 70 (72)
T PHA03054 47 GWYWLIIIFFIVLILLLLIYLYLK 70 (72)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344445557777888888876655
No 28
>PF06624 RAMP4: Ribosome associated membrane protein RAMP4; InterPro: IPR010580 This entry contains Serp1/Ramp4, which has been shown to interacts with target proteins during their translocation into the lumen of the endoplasmic reticulum. It has also been shown to protect unfolded target proteins against degradation during ER stress. It may facilitate glycosylation of target proteins after termination of ER stress and may modulate the use of N-glycosylation sites on target proteins [, ].
Probab=21.90 E-value=36 Score=25.94 Aligned_cols=24 Identities=38% Similarity=0.551 Sum_probs=19.5
Q ss_pred CCCCchHHHHHHHHHHHHHHhhhh
Q 017911 18 SKKSPLLLRLIALLFAVVCGVFFC 41 (364)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~ 41 (364)
.+|+|.-.+++.|++.+|||=-|+
T Consensus 32 ~~k~pVgp~~L~l~iFVV~Gs~if 55 (63)
T PF06624_consen 32 EKKYPVGPWLLGLFIFVVCGSAIF 55 (63)
T ss_pred cccCCcCHHHHhhhheeeEcHHHH
Confidence 468999999998888889986554
No 29
>COG2115 XylA Xylose isomerase [Carbohydrate transport and metabolism]
Probab=20.77 E-value=74 Score=32.20 Aligned_cols=43 Identities=23% Similarity=0.312 Sum_probs=38.3
Q ss_pred HHHHHHhCCCCcCcccccccccccChhhhccCHHHHHHHHcCC
Q 017911 310 KEVLEFLRLPQMKLKSRQVKIHRGTLSEHIQNWNDVKKTLNGT 352 (364)
Q Consensus 310 ~~Vl~FLGLp~~~l~s~~vKih~~~l~~~V~N~dEv~~~l~gt 352 (364)
=+.++-||+|.--+++.-|.-...++.+...|.||+.+.+++-
T Consensus 88 FEff~kL~vpyyCFHD~DvaPeG~~l~E~~~nl~~ivd~~~~k 130 (438)
T COG2115 88 FEFFEKLGVPYYCFHDVDVAPEGASLKEYYNNLDEIVDVLAGK 130 (438)
T ss_pred HHHHHHhCCCeEeecccccCCCcccHHHHHHHHHHHHHHHHHH
Confidence 4567789999999999999999999999999999999988753
No 30
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=20.72 E-value=94 Score=25.89 Aligned_cols=22 Identities=32% Similarity=0.368 Sum_probs=15.6
Q ss_pred CcEEEEccCCch-HHHHHHHHhc
Q 017911 131 QYFAIISMQRSG-SGWFETLLNS 152 (364)
Q Consensus 131 ~~F~Ilg~pRSG-STlL~~lLns 152 (364)
..++|+|.+.+| ||++..+++.
T Consensus 3 ~~i~i~G~~~~GKstli~~l~~~ 25 (174)
T cd01895 3 IRIAIIGRPNVGKSSLVNALLGE 25 (174)
T ss_pred cEEEEEcCCCCCHHHHHHHHhCc
Confidence 457999999999 5555555544
No 31
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=20.52 E-value=60 Score=32.28 Aligned_cols=24 Identities=33% Similarity=0.500 Sum_probs=20.8
Q ss_pred cEEEEccCCchHHHHHHHHhcCcC
Q 017911 132 YFAIISMQRSGSGWFETLLNSHMN 155 (364)
Q Consensus 132 ~F~Ilg~pRSGSTlL~~lLnsHP~ 155 (364)
-|+++||.=||-|.+.+-|++|-.
T Consensus 21 ~ilVvGMAGSGKTTF~QrL~~hl~ 44 (366)
T KOG1532|consen 21 IILVVGMAGSGKTTFMQRLNSHLH 44 (366)
T ss_pred EEEEEecCCCCchhHHHHHHHHHh
Confidence 467889999999999999999843
No 32
>cd01038 Endonuclease_DUF559 Domain of unknown function, appears to be related to a diverse group of endonucleases.
Probab=20.31 E-value=2.3e+02 Score=23.15 Aligned_cols=26 Identities=19% Similarity=0.418 Sum_probs=23.5
Q ss_pred CCCeEEEechhhhcCHHH-HHHHHHHh
Q 017911 291 STRHIVLYYEDLVKNRKK-LKEVLEFL 316 (364)
Q Consensus 291 ~~~~l~V~YEDLv~dP~~-l~~Vl~FL 316 (364)
+-.++.+.++|+..+|+. +.+|.+.|
T Consensus 81 Gw~vlR~~~~dv~~~~~~~~~~I~~~l 107 (108)
T cd01038 81 GFRVLRFWNNEVLRNIEAVLEAILAAL 107 (108)
T ss_pred CCEEEEEEHHHHhhCHHHHHHHHHHHh
Confidence 679999999999999999 89988765
Done!